Citrus Sinensis ID: 036375

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-------740-------750-------760-------770-------780-------790-------800-------810-------820-------830-------840-------850-------860-------870-------880-------890-------900-------910-------920-------930-------940-------950-------960-------970-------980-------990------1000------101
Protein Sequence
MGRLSVLGLMLTMLCAITSDYASYGASRFSNCSENDLDALIDFKNGLEDPESRLASWKGSNCCQWHGISCDDDTGAIVAINLGNPYHVVNSDSSGSLLEYLDLSFNTFNDIPIPEFLGSLENLQYLNLSEAGFTGVVPSSLGNLHRLQYFDVSAELFALSADSLDWLTGLVSLKHLAMNRVDLSLVGSEWLGILKNLPNLTELHLSVCGLTGSITSITPVNLTSPAVLDLSLNHFNSLFPNWLVNISTLVYVDLSDCDLYGRIPIGFGELPNLQYLSLAGNNNLSGSCSQLFRGSWKKIQILNFASNKLHGKLPSSVANMTSLTNFDLFDKKVEGGIPSSIARLCYLKEFDLSGNNLTGSLPEILQGTDLCVSSNSPLPSLISMRLGNNHLKGKLPEWLSQLENLVELTLSYNLLQGPIPASLGNLKNLTKLNLPGNQLNGTLPETLGSLPELSVLDVSSNSLTGIISEIHFSRLSKLKFLGLSSNSFILNVSSSWIPPFQVQSLNMRSCQLGPSFPSWLKTQQGVSFLDFSNASISGPIPNWFWDISSKLSLLNVSLNQLQGQLPNPLNIAPFADVDFRSNLLEGPIPLPIVEIELLDLSNNHFSGPIPQNISGSMPNLIFLSVSGNRLTGKIPGSIGEMQLLQVIDLSRNSISGSISSSIGNCTFLKVLDLSYSSLSGVIPASLGQLTRLQSLHLNNNKLTGNLPSSFQNLTSLETLDLGNNRFSGNIPSLLGNGFVGLRILSLRSNAFSGEIPSKLSNLSSLQVLDLAENNLTGSIPGSVGDLKAMAHVQNIVKYLLFGRYRGIYYEENLVINTKGSSKDTPRLFHFIDLSGNNLHGDFPTQLTKLVGLVVLNLSRNHIGGQIPENISGLHQLASLDLSSNNLSGGIPSSLSSLSFLGYINLSRNQLSGKIPFEGHMTTFDASSFAGNPGLCGDPLPVKCQDDESDKGGNVVEDDNEDEFIDKWFYFSLGLGFAAGIIVPMFIFSIKKPCSDAYFKFVDKIVDRLS
Secondary Structure (PSIPRED)
cccHHHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHcccccccccccccccccccccccEEEccccccEEEEEcccccccccccccccccccccccccccccccccccccccccccEEEcccccccccccccccccccccEEEcccccccccccccccccccccccEEEccccccccccccHHHHHcccccccEEEccccccccccccccccccccccEEEcccccccccccHHHHccccccEEEcccccccccccccccccccccEEEcccccccccccccccccccccccEEEcccccccccccHHHcccccccEEEcccccccccccccccccccccEEEcccccccccccccccccccccccccccccccEEEcccccccccccHHHcccccccEEEccccccEEEccccccccccccEEEcccccccccccccccccccccEEEccccccEEEEcHHHHcccccccEEEccccEEEEEccccccccccccEEEcccccccccccHHccccccccEEEcccccccccccHHHHHHcccccEEEccccccccccccccccccccEEEccccccccccccccccccEEEcccccccccccccHHcccccccEEEcccccccccccccccccccccEEEcccccccccccccccccccccEEEccccccEEEccccccccccccEEEcccccccccccHHHHccccccEEEcccccccccccHHHHHccccccEEEccccccEEcccccccccccccEEEccccccccccccccccHHHcccccccccEEEccccccEEEEEEEEEEEccccccccccccEEEcccccccccccHHHHccccccccccccccccccccccccccccccEEEccccccccccccccccccccccccccccccEEcccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEEEHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHcc
Secondary Structure Prediction (SSPRO)
cHHHHHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHcccccccccccccccccccEEEEEEcccccEEEEEEcccccccccHHHcHHHHcEEEccccccccccccHHHcccccccEEEcccccccccccHHHccccccEEEEccccccccccccHHHHHccccccEEEccccccccccccHHHHHHcccccEEEEcccccccccccHHHHHcccccEEEEcccccccccccHHHHccccccEEEEccccccccccHHHccccccEEEEccccccccccccHHHHHcccccEEEEcccccccccccHHHcccccccEEEcccccccccccHHHHccccccEEEcccccccccccHHHcccccccHHHcccccccEEEcccccccccccccccccccccEEEcccccccccccccccccccccEEEccccccEEcccHHHHHcccccEEEccccEEEEEcccccccccccEEEcEcccccEEEEcccccccccccEEEEEccccccccccHHHHccccccEEEcccccccccccHHHHHHHHHHHHHHHccccccccccccccccccEEEEcccccccccccccccccEEEEcccccccccccHHHHcccccEEEEEEccccccccccHHHccccccEEEEcccccEEccccHHHHHcccccEEEEEEEccEEEccHHHHHcccccEEEccccEEEccccHHHHHcccccEEEccccccEEEccHHHHcccccccEEEccccEEEEEccHHHHHccccEEEEcccccccccccHHHHHHHHHHHccccccccccccccccEEEcEEEEEccccHHHHEEEEEEEEcccccEEccccHHHHHcccccEEEEEEEccEEEccHHHHHcccccEEEccccEEEccccHHHHHcccccEEEccccccEEEccccccHHHccHHHcccccEEEccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHc
Coil and Loop (DISEMBL)
MGRLSVLGLMLTMLCAITSdyasygasrfsncsenDLDALIDfkngledpesrlaswkgsnccqwhgiscdddtGAIVAINlgnpyhvvnsdssgsllEYLDLsfntfndipipeflgslenlqylnlseagftgvvpsslgnlhrlqyFDVSAELFALSADSLDWLTGLVSLkhlamnrvdlslvgsewlgilknlpnltelhlsvcgltgsitsitpvnltspaVLDLSLNHFNSLFPNWLVNISTLVyvdlsdcdlygripigfgelpnlqylslagnnnlsgscsqlfrgsWKKIQILNFAsnklhgklpssvanmtsltnfdlfdkkveggipssIARLCYLkefdlsgnnltgslpeilqgtdlcvssnsplpslismrlgnnhlkgklPEWLSQLENLVELTLSYnllqgpipaslgnlknltklnlpgnqlngtlpetlgslpelsvldvssnsltgiISEIHFSRLSKLKFLGLSSNSFILnvssswippfqvqslnmrscqlgpsfpswlktqqgvsfldfsnasisgpipnwfwDISSKLSLLNVSLNQlqgqlpnplniapfadvdfrsnllegpiplpiVEIELldlsnnhfsgpipqnisgsmpnLIFLSVSgnrltgkipgsigEMQLLQVIDLsrnsisgsisssignctFLKVLDLSYsslsgvipaslgqlTRLQSlhlnnnkltgnlpssfqnltsletldlgnnrfsgnipsllgngfVGLRILSLRSnafsgeipsklsnlsslqVLDLAennltgsipgsvgDLKAMAHVQNIVKYLLFGryrgiyyeenlvintkgsskdtprlFHFIdlsgnnlhgdfptqLTKLVGLVVLNlsrnhiggqipenisglhqlasldlssnnlsggipsslsslSFLGYINLSrnqlsgkipfeghmttfdassfagnpglcgdplpvkcqddesdkggnvveddnedefidkWFYFSLGlgfaagiivPMFIFsikkpcsdaYFKFVDKIVDRLS
Flexible Loop (DISEMBL)
MGRLSVLGLMLTMLCAITSDYASYGASRFSNCSENDLDALIDFKNGLEDPESRLASWKGSNCCQWHGISCDDDTGAIVAINLGNPYHVVNSDSSGSLLEYLDLSFNTFNDIPIPEFLGSLENLQYLNLSEAGFTGVVPSSLGNLHRLQYFDVSAELFALSADSLDWLTGLVSLKHLAMNRVDLSLVGSEWLGILKNLPNLTELHLSVCGLTGSITSITPVNLTSPAVLDLSLNHFNSLFPNWLVNISTLVYVDLSDCDLYGRIPIGFGELPNLQYLSLAGNNNLSGSCSQLFRGSWKKIQILNFASNKLHGKLPSSVANMTSLTNFDLFDKKVEGGIPSSIARLCYLKEFDLSGNNLTGSLPEILQGTDLCVSSNSPLPSLISMRLGNNHLKGKLPEWLSQLENLVELTLSYNLLQGPIPASLGNLKNLTKLNLPGNQLNGTLPETLGSLPELSVLDVSSNSLTGIISEIHFSRLSKLKFLGLSSNSFILNVSSSWIPPFQVQSLNMRSCQLGPSFPSWLKTQQGVSFLDFSNASISGPIPNWFWDISSKLSLLNVSLNQLQGQLPNPLNIAPFADVDFRSNLLEGPIPLPIVEIELLDLSNNHFSGPIPQNISGSMPNLIFLSVSGNRLTGKIPGSIGEMQLLQVIDLSRNSISGSISSSIGNCTFLKVLDLSYSSLSGVIPASLGQLTRLQSLHLNNNKLTGNLPSSFQNLTSLETLDLGNNRFSGNIPSLLGNGFVGLRILSLRSNAFSGEIPSKLSNLSSLQVLDLAENNLTGSIPGSVGDLKAMAHVQNIVKYLLFGRYRGIYYEENLVINTKGSSKDTPRLFHFIDLSGNNLHGDFPTQLTKLVGLVVLNLSRNHIGGQIPENISGLHQLASLDLSSNNLSGGIPSSLSSLSFLGYINLSRNQLSGKIPFEGHMTTFDASSFAGNPGLCGDPLPVKCQDDESDKGGNVVEDDNEDEFIDKWFYFSLGLGFAAGIIVPMFIFSIKKPCSDAYFKFVDKIVDRLS
Low Complexity Region (SEG)
MGRLSVLGLMLTMLCAITSDYASYGASRFSNCSENDLDALIDFKNGLEDPESRLASWKGSNCCQWHGISCDDDTGAIVAINLGNPYHVVNSDSSGSLLEYLDLSFNTFNDIPIPEFLGSLENLQYLNLSEAGFTGVVPSSLGNLHRLQYFDVSAELFALSADSLDWLTGLVSLKHLAMNRVDLSLVGSEWLGILKNLPNLTELHLSVCGLTGSITSITPVNLTSPAVLDLSLNHFNSLFPNWLVNISTLVYVDLSDCDLYGRIPIGFGELPNLQYLSLAGNNNLSGSCSQLFRGSWKKIQILNFASNKLHGKLPSSVANMTSLTNFDLFDKKVEGGIPSSIARLCYLKEFDLSGNNLTGSLPEILQGTDLCVSSNSPLPSLISMRLGNNHLKGKLPEWLSQLENLVELTLSYNLLQGPIPASlgnlknltklnlpgnQLNGTLPETLGSLPELSVLDVSSNSLTGIISEIHFSRLSKLKFLGlssnsfilnvsssWIPPFQVQSLNMRSCQLGPSFPSWLKTQQGVSFLDFSNASISGPIPNWFWDIssklsllnvslnqlqgqlpnplnIAPFADVDFRSNLLEGPIPLPIVEIELLDLSNNHFSGPIPQNISGSMPNLIFLSVSGNRLTGKIPGSIGEMQLLQVIDLSRNsisgsisssigNCTFLKVLDLSYSSLSGVIPASLGQLTRLQSLHLNNNKLTGNLPSSFQNLTSLETLDLGNNRFSGNIPSLLGNGFVGLRILSLRSNAFSGEIPSKLSNLSSLQVLDLAENNLTGSIPGSVGDLKAMAHVQNIVKYLLFGRYRGIYYEENLVINTKGSSKDTPRLFHFIDLSGNNLHGDFPTQLTKLVGLVVLNLSRNHIGGQIPENISGLHQlasldlssnnlsggipsslsslsflgYINLSRNQLSGKIPFEGHMTTFDASSFAGNPGLCGDPLPVKCQDDESDKGGNVVEDDNEDEFIDKWFYFSLGLGFAAGIIVPMFIFSIKKPCSDAYFKFVDKIVDRLS
Disordered region (IsUnstruct)
****SVLGLMLTMLCAITSDYASYGASRFSNCSENDLDALIDFKNGLEDPESRLASWKGSNCCQWHGISCDDDTGAIVAINLGNPYHVVNSDSSGSLLEYLDLSFNTFNDIPIPEFLGSLENLQYLNLSEAGFTGVVPSSLGNLHRLQYFDVSAELFALSADSLDWLTGLVSLKHLAMNRVDLSLVGSEWLGILKNLPNLTELHLSVCGLTGSITSITPVNLTSPAVLDLSLNHFNSLFPNWLVNISTLVYVDLSDCDLYGRIPIGFGELPNLQYLSLAGNNNLSGSCSQLFRGSWKKIQILNFASNKLHGKLPSSVANMTSLTNFDLFDKKVEGGIPSSIARLCYLKEFDLSGNNLTGSLPEILQGTDLCVSSNSPLPSLISMRLGNNHLKGKLPEWLSQLENLVELTLSYNLLQGPIPASLGNLKNLTKLNLPGNQLNGTLPETLGSLPELSVLDVSSNSLTGIISEIHFSRLSKLKFLGLSSNSFILNVSSSWIPPFQVQSLNMRSCQLGPSFPSWLKTQQGVSFLDFSNASISGPIPNWFWDISSKLSLLNVSLNQLQGQLPNPLNIAPFADVDFRSNLLEGPIPLPIVEIELLDLSNNHFSGPIPQNISGSMPNLIFLSVSGNRLTGKIPGSIGEMQLLQVIDLSRNSISGSISSSIGNCTFLKVLDLSYSSLSGVIPASLGQLTRLQSLHLNNNKLTGNLPSSFQNLTSLETLDLGNNRFSGNIPSLLGNGFVGLRILSLRSNAFSGEIPSKLSNLSSLQVLDLAENNLTGSIPGSVGDLKAMAHVQNIVKYLLFGRYRGIYYEENLVINTKGSSKDTPRLFHFIDLSGNNLHGDFPTQLTKLVGLVVLNLSRNHIGGQIPENISGLHQLASLD*************LSSLSFLGYINLSRNQLSGKIPFEGHMTTFDASSFAGNPGLCG************************DEFIDKWFYFSLGLGFAAGIIVPMFIFSIKKPCSDAYFKFVDKIV****
Disordered Region (DISOPRED)
****SVLGLMLTMLCAITSDYASYGAS****CSENDLDALIDFKNGLEDPESRLASWKGSNCCQWHGISCDDDTGAIVAINLGNPYHVVNSDSSGSLLEYLDLSFNTFNDIPIPEFLGSLENLQYLNLSEAGFTGVVPSSLGNLHRLQYFDVSAELFALSADSLDWLTGLVSLKHLAMNRVDLSLVGSEWLGILKNLPNLTELHLSVCGLTGSITSITPVNLTSPAVLDLSLNHFNSLFPNWLVNISTLVYVDLSDCDLYGRIPIGFGELPNLQYLSLAGNNNLSGSCSQLFRGSWKKIQILNFASNKLHGKLPSSVANMTSLTNFDLFDKKVEGGIPSSIARLCYLKEFDLSGNNLTGSLPEILQGTDLCVSSNSPLPSLISMRLGNNHLKGKLPEWLSQLENLVELTLSYNLLQGPIPASLGNLKNLTKLNLPGNQLNGTLPETLGSLPELSVLDVSSNSLTGIISEIHFSRLSKLKFLGLSSNSFILNVSSSWIPPFQVQSLNMRSCQLGPSFPSWLKTQQGVSFLDFSNASISGPIPNWFWDISSKLSLLNVSLNQLQGQLPNPLNIAPFADVDFRSNLLEGPIPLPIVEIELLDLSNNHFSGPIPQNISGSMPNLIFLSVSGNRLTGKIPGSIGEMQLLQVIDLSRNSISGSISSSIGNCTFLKVLDLSYSSLSGVIPASLGQLTRLQSLHLNNNKLTGNLPSSFQNLTSLETLDLGNNRFSGNIPSLLGNGFVGLRILSLRSNAFSGEIPSKLSNLSSLQVLDLAENNLTGSIPGSVGDLKAMAHV*******LFGRYRGIYYEENLVINTKGSSKDTPRLFHFIDLSGNNLHGDFPTQLTKLVGLVVLNLSRNHIGGQIPENISGLHQLASLDLSSNNLSGGIPSSLSSLSFLGYINLSRNQLSGKIPFEGHMTTFDASSFAGNPGLCGDP***************************KWFYFSLGLGFAAGIIVPMFIFSIKKPCSDAYFKFVDKIVDRLS
Disordered Region (DISEMBL)
MGRLSVLGLMLTMLCAITSDYASYGASRFSNCSENDLDALIDFKNGLEDPESRLASWKGSNCCQWHGISCDDDTGAIVAINLGNPYHVVNSDSSGSLLEYLDLSFNTFNDIPIPEFLGSLENLQYLNLSEAGFTGVVPSSLGNLHRLQYFDVSAELFALSADSLDWLTGLVSLKHLAMNRVDLSLVGSEWLGILKNLPNLTELHLSVCGLTGSITSITPVNLTSPAVLDLSLNHFNSLFPNWLVNISTLVYVDLSDCDLYGRIPIGFGELPNLQYLSLAGNNNLSGSCSQLFRGSWKKIQILNFASNKLHGKLPSSVANMTSLTNFDLFDKKVEGGIPSSIARLCYLKEFDLSGNNLTGSLPEILQGTDLCVSSNSPLPSLISMRLGNNHLKGKLPEWLSQLENLVELTLSYNLLQGPIPASLGNLKNLTKLNLPGNQLNGTLPETLGSLPELSVLDVSSNSLTGIISEIHFSRLSKLKFLGLSSNSFILNVSSSWIPPFQVQSLNMRSCQLGPSFPSWLKTQQGVSFLDFSNASISGPIPNWFWDISSKLSLLNVSLNQLQGQLPNPLNIAPFADVDFRSNLLEGPIPLPIVEIELLDLSNNHFSGPIPQNISGSMPNLIFLSVSGNRLTGKIPGSIGEMQLLQVIDLSRNSISGSISSSIGNCTFLKVLDLSYSSLSGVIPASLGQLTRLQSLHLNNNKLTGNLPSSFQNLTSLETLDLGNNRFSGNIPSLLGNGFVGLRILSLRSNAFSGEIPSKLSNLSSLQVLDLAENNLTGSIPGSVGDLKAMAHVQNIVKYLLFGRYRGIYYEENLVINTKGSSKDTPRLFHFIDLSGNNLHGDFPTQLTKLVGLVVLNLSRNHIGGQIPENISGLHQLASLDLSSNNLSGGIPSSLSSLSFLGYINLSRNQLSGKIPFEGHMTTFDASSFAGNPGLCGDPLPVKCQDDESDKGGNVVEDDNEDEFIDKWFYFSLGLGFAAGIIVPMFIFSIKKPCSDAYFKFVDKIVDRLS
Disordered Region (DISPRO)
*GRLSVLGLMLTMLCAITSDYASYGASRFSNCSENDLDALIDFKNGLEDPESRLASWKGSNCCQWHGISCDDDTGAIVAINLGNPYHVVNSDSSGSLLEYLDLSFNTFNDIPIPEFLGSLENLQYLNLSEAGFTGVVPSSLGNLHRLQYFDVSAELFALSADSLDWLTGLVSLKHLAMNRVDLSLVGSEWLGILKNLPNLTELHLSVCGLTGSITSITPVNLTSPAVLDLSLNHFNSLFPNWLVNISTLVYVDLSDCDLYGRIPIGFGELPNLQYLSLAGNNNLSGSCSQLFRGSWKKIQILNFASNKLHGKLPSSVANMTSLTNFDLFDKKVEGGIPSSIARLCYLKEFDLSGNNLTGSLPEILQGTDLCVSSNSPLPSLISMRLGNNHLKGKLPEWLSQLENLVELTLSYNLLQGPIPASLGNLKNLTKLNLPGNQLNGTLPETLGSLPELSVLDVSSNSLTGIISEIHFSRLSKLKFLGLSSNSFILNVSSSWIPPFQVQSLNMRSCQLGPSFPSWLKTQQGVSFLDFSNASISGPIPNWFWDISSKLSLLNVSLNQLQGQLPNPLNIAPFADVDFRSNLLEGPIPLPIVEIELLDLSNNHFSGPIPQNISGSMPNLIFLSVSGNRLTGKIPGSIGEMQLLQVIDLSRNSISGSISSSIGNCTFLKVLDLSYSSLSGVIPASLGQLTRLQSLHLNNNKLTGNLPSSFQNLTSLETLDLGNNRFSGNIPSLLGNGFVGLRILSLRSNAFSGEIPSKLSNLSSLQVLDLAENNLTGSIPGSVGDLKAMAHVQNIVKYLLFGRYRGIYYEENLVINTKGSSKDTPRLFHFIDLSGNNLHGDFPTQLTKLVGLVVLNLSRNHIGGQIPENISGLHQLASLDLSSNNLSGGIPSSLSSLSFLGYINLSRNQLSGKIPFEGHMTTFDASSFAGNPGLCGDPLPVKC*****************DEFIDKWFYFSLGLGFAAGIIVPMFIFSIKKPCSDAYFKFVDKIVDRLS
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
SSSSSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MGRLSVLGLMLTMLCAITSDYASYGASRFSNCSENDLDALIDFKNGLEDPESRLASWKGSNCCQWHGISCDDDTGAIVAINLGNPYHVVNSDSSGSLLEYLDLSFNTFNDIPIPEFLGSLENLQYLNLSEAGFTGVVPSSLGNLHRLQYFDVSAELFALSADSLDWLTGLVSLKHLAMNRVDLSLVGSEWLGILKNLPNLTELHLSVCGLTGSITSITPVNLTSPAVLDLSLNHFNSLFPNWLVNISTLVYVDLSDCDLYGRIPIGFGELPNLQYLSLAGNNNLSGSCSQLFRGSWKKIQILNFASNKLHGKLPSSVANMTSLTNFDLFDKKVEGGIPSSIARLCYLKEFDLSGNNLTGSLPEILQGTDLCVSSNSPLPSLISMRLGNNHLKGKLPEWLSQLENLVELTLSYNLLQGPIPASLGNLKNLTKLNLPGNQLNGTLPETLGSLPELSVLDVSSNSLTGIISEIHFSRLSKLKFLGLSSNSFILNVSSSWIPPFQVQSLNMRSCQLGPSFPSWLKTQQGVSFLDFSNASISGPIPNWFWDISSKLSLLNVSLNQLQGQLPNPLNIAPFADVDFRSNLLEGPIPLPIVEIELLDLSNNHFSGPIPQNISGSMPNLIFLSVSGNRLTGKIPGSIGEMQLLQVIDLSRNSISGSISSSIGNCTFLKVLDLSYSSLSGVIPASLGQLTRLQSLHLNNNKLTGNLPSSFQNLTSLETLDLGNNRFSGNIPSLLGNGFVGLRILSLRSNAFSGEIPSKLSNLSSLQVLDLAENNLTGSIPGSVGDLKAMAHVQNIVKYLLFGRYRGIYYEENLVINTKGSSKDTPRLFHFIDLSGNNLHGDFPTQLTKLVGLVVLNLSRNHIGGQIPENISGLHQLASLDLSSNNLSGGIPSSLSSLSFLGYINLSRNQLSGKIPFEGHMTTFDASSFAGNPGLCGDPLPVKCQDDESDKGGNVVEDDNEDEFIDKWFYFSLGLGFAAGIIVPMFIFSIKKPCSDAYFKFVDKIVDRLS
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	1009	2.2.26 [Sep-21-2011]
Q9FL28	1173	LRR receptor-like serine/	no	no	0.707	0.608	0.340	6e-86
Q9FIZ3	1252	LRR receptor-like serine/	no	no	0.697	0.562	0.323	1e-82
C0LGQ5	1249	LRR receptor-like serine/	no	no	0.789	0.638	0.319	1e-81
Q9C9H7	847	Receptor-like protein 12	no	no	0.657	0.782	0.320	1e-76
Q9SHI2	1101	Leucine-rich repeat recep	no	no	0.643	0.589	0.316	2e-74
Q9LYN8	1192	Leucine-rich repeat recep	no	no	0.723	0.612	0.322	3e-73
Q9LP24	1120	Probable leucine-rich rep	no	no	0.674	0.608	0.332	8e-72
O49318	1124	Probable leucine-rich rep	no	no	0.630	0.565	0.312	2e-69
Q9ZPS9	1143	Serine/threonine-protein	no	no	0.531	0.468	0.341	7e-68
Q9LVP0	1102	Probable leucine-rich rep	no	no	0.640	0.586	0.314	7e-66

>sp|Q9FL28|FLS2_ARATH LRR receptor-like serine/threonine-protein kinase FLS2 OS=Arabidopsis thaliana GN=FLS2 PE=1 SV=1

 Score =  319 bits (818), Expect = 6e-86,   Method: Compositional matrix adjust.
 Identities = 258/757 (34%), Positives = 377/757 (49%), Gaps = 43/757 (5%)

Query: 205 LSVCGLTGSITSITPVNLTSPAVLDLSLNHFNSLFPNWLVNISTLVYVDLSDCDLYGRIP 264
           L  C  TG IT  +  ++ S ++L+        +    + N++ L  +DL+     G+IP
Sbjct: 58  LRHCNWTG-ITCDSTGHVVSVSLLE---KQLEGVLSPAIANLTYLQVLDLTSNSFTGKIP 113

Query: 265 IGFGELPNLQYLSLAGNNNLSGSCSQLFRGSW--KKIQILNFASNKLHGKLPSSVANMTS 322
              G+L  L  L L  N   SGS      G W  K I  L+  +N L G +P  +   +S
Sbjct: 114 AEIGKLTELNQLILYLNY-FSGSIPS---GIWELKNIFYLDLRNNLLSGDVPEEICKTSS 169

Query: 323 LTNFDLFDKKVEGGIPSSIARLCYLKEFDLSGNNLTGSLPEILQGTDLCVSSNSPLPSLI 382
           L         + G IP  +  L +L+ F  +GN+LTGS+P           S   L +L 
Sbjct: 170 LVLIGFDYNNLTGKIPECLGDLVHLQMFVAAGNHLTGSIP----------VSIGTLANLT 219

Query: 383 SMRLGNNHLKGKLPEWLSQLENLVELTLSYNLLQGPIPASLGNLKNLTKLNLPGNQLNGT 442
            + L  N L GK+P     L NL  L L+ NLL+G IPA +GN  +L +L L  NQL G 
Sbjct: 220 DLDLSGNQLTGKIPRDFGNLLNLQSLVLTENLLEGDIPAEIGNCSSLVQLELYDNQLTGK 279

Query: 443 LPETLGSLPELSVLDVSSNSLTGIISEIHFSRLSKLKFLGLSSNSFILNVSSSWIPPFQV 502
           +P  LG+L +L  L +  N LT  I    F RL++L  LGLS N  +  +S        +
Sbjct: 280 IPAELGNLVQLQALRIYKNKLTSSIPSSLF-RLTQLTHLGLSENHLVGPISEEIGFLESL 338

Query: 503 QSLNMRSCQLGPSFPSWLKTQQGVSFLDFSNASISGPIPNWFWDISSKLSLLNVSL--NQ 560
           + L + S      FP  +   + ++ L     +ISG +P    D+    +L N+S   N 
Sbjct: 339 EVLTLHSNNFTGEFPQSITNLRNLTVLTVGFNNISGELP---ADLGLLTNLRNLSAHDNL 395

Query: 561 LQGQLPNPL-NIAPFADVDFRSNLLEGPIPLPIVEIEL--LDLSNNHFSGPIPQNISGSM 617
           L G +P+ + N      +D   N + G IP     + L  + +  NHF+G IP +I  + 
Sbjct: 396 LTGPIPSSISNCTGLKLLDLSHNQMTGEIPRGFGRMNLTFISIGRNHFTGEIPDDIF-NC 454

Query: 618 PNLIFLSVSGNRLTGKIPGSIGEMQLLQVIDLSRNSISGSISSSIGNCTFLKVLDLSYSS 677
            NL  LSV+ N LTG +   IG++Q L+++ +S NS++G I   IGN   L +L L  + 
Sbjct: 455 SNLETLSVADNNLTGTLKPLIGKLQKLRILQVSYNSLTGPIPREIGNLKDLNILYLHSNG 514

Query: 678 LSGVIPASLGQLTRLQSLHLNNNKLTGNLPSSFQNLTSLETLDLGNNRFSGNIPSLLGNG 737
            +G IP  +  LT LQ L + +N L G +P    ++  L  LDL NN+FSG IP+L    
Sbjct: 515 FTGRIPREMSNLTLLQGLRMYSNDLEGPIPEEMFDMKLLSVLDLSNNKFSGQIPALFSK- 573

Query: 738 FVGLRILSLRSNAFSGEIPSKLSNLSSLQVLDLAENNLTGSIPGSV-GDLKAMAHVQNIV 796
              L  LSL+ N F+G IP+ L +LS L   D+++N LTG+IPG +   LK M    N  
Sbjct: 574 LESLTYLSLQGNKFNGSIPASLKSLSLLNTFDISDNLLTGTIPGELLASLKNMQLYLNFS 633

Query: 797 KYLLFGR----------YRGIYYEENLVINTKGSSKDTPRLFHFIDLSGNNLHGDFPTQL 846
             LL G            + I    NL   +   S    +    +D S NNL G  P ++
Sbjct: 634 NNLLTGTIPKELGKLEMVQEIDLSNNLFSGSIPRSLQACKNVFTLDFSQNNLSGHIPDEV 693

Query: 847 TKLVGLVV-LNLSRNHIGGQIPENISGLHQLASLDLSSNNLSGGIPSSLSSLSFLGYINL 905
            + + +++ LNLSRN   G+IP++   +  L SLDLSSNNL+G IP SL++LS L ++ L
Sbjct: 694 FQGMDMIISLNLSRNSFSGEIPQSFGNMTHLVSLDLSSNNLTGEIPESLANLSTLKHLKL 753

Query: 906 SRNQLSGKIPFEGHMTTFDASSFAGNPGLCGDPLPVK 942
           + N L G +P  G     +AS   GN  LCG   P+K
Sbjct: 754 ASNNLKGHVPESGVFKNINASDLMGNTDLCGSKKPLK 790

Constitutes the pattern-recognition receptor (PPR) that determines the specific perception of flagellin (flg22), a potent elicitor of the defense response to pathogen-associated molecular patterns (PAMPs). Flagellin-binding to the receptor is the first step to initiate the innate immune MAP kinase signaling cascade (MEKK1, MKK4/MKK5 and MPK3/MPK6), resulting in enhanced resistance against pathogens. Binding to the effector AvrPto1 from Pseudomonas syringae blocks the downstream plant immune response.
Arabidopsis thaliana (taxid: 3702)
EC: 2EC: .EC: 7EC: .EC: 1EC: 1EC: .EC: 1

>sp|Q9FIZ3|GSO2_ARATH LRR receptor-like serine/threonine-protein kinase GSO2 OS=Arabidopsis thaliana GN=GSO2 PE=2 SV=2

 Score =  308 bits (789), Expect = 1e-82,   Method: Compositional matrix adjust.
 Identities = 272/840 (32%), Positives = 403/840 (47%), Gaps = 136/840 (16%)

Query: 190 WLGILKNLPNLTELHLSVCGLTGSITSITPVNLTSPAVLDLSLNHFNSLFPNWLVNISTL 249
           W G+      +  L+LS  GLTGSI         SP     S+  FN+L           
Sbjct: 63  WTGVTCGGREIIGLNLSGLGLTGSI---------SP-----SIGRFNNL----------- 97

Query: 250 VYVDLSDCDLYGRIPIGFGELPNLQYLSLAGNNNLSGSC-SQLFRGSWKKIQILNFASNK 308
           +++DLS   L G IP     L +        +N LSG   SQL  GS   ++ L    N+
Sbjct: 98  IHIDLSSNRLVGPIPTTLSNLSSSLESLHLFSNLLSGDIPSQL--GSLVNLKSLKLGDNE 155

Query: 309 LHGKLPSSVANMTSLTNFDLFDKKVEGGIPSSIARLCYLKEFDLSGNNLTGSLP-EILQG 367
           L+G +P +  N+ +L    L   ++ G IPS   RL  L+   L  N L G +P EI   
Sbjct: 156 LNGTIPETFGNLVNLQMLALASCRLTGLIPSRFGRLVQLQTLILQDNELEGPIPAEIGNC 215

Query: 368 TDLCVSSNSPLPSLISMRLGNNHLKGKLPEWLSQLENLVELTLSYNLLQGPIPASLGNLK 427
           T L + + +            N L G LP  L++L+NL  L L  N   G IP+ LG+L 
Sbjct: 216 TSLALFAAAF-----------NRLNGSLPAELNRLKNLQTLNLGDNSFSGEIPSQLGDLV 264

Query: 428 NLTKLNLPGNQLNGTLPETLGSLPELSVLDVSSNSLTGIISEIHFSRLSKLKFLGLSSNS 487
           ++  LNL GNQL G +P+ L  L  L  LD+SSN+LTG+I E  F R+++L+FL L+ N 
Sbjct: 265 SIQYLNLIGNQLQGLIPKRLTELANLQTLDLSSNNLTGVIHE-EFWRMNQLEFLVLAKNR 323

Query: 488 FILNVSSSWIPPF------QVQSLNMRSCQLGPSFPSWLKTQQGVSFLDFSNASISGPIP 541
                 S  +P         ++ L +   QL    P+ +   Q +  LD SN +++G IP
Sbjct: 324 L-----SGSLPKTICSNNTSLKQLFLSETQLSGEIPAEISNCQSLKLLDLSNNTLTGQIP 378

Query: 542 NWFWDISSKLSLLNVSLNQLQGQLPNPL-NIAPFADVDFRSNLLEGPIPLPIV---EIEL 597
           +  + +  +L+ L ++ N L+G L + + N+    +     N LEG +P  I    ++E+
Sbjct: 379 DSLFQLV-ELTNLYLNNNSLEGTLSSSISNLTNLQEFTLYHNNLEGKVPKEIGFLGKLEI 437

Query: 598 LDLSNNHFSGPIPQNISGSMPNLIFLSVSGNRLTGKIPGSIGEMQLLQVIDLSRNSISGS 657
           + L  N FSG +P  I G+   L  +   GNRL+G+IP SIG ++ L  + L  N + G+
Sbjct: 438 MYLYENRFSGEMPVEI-GNCTRLQEIDWYGNRLSGEIPSSIGRLKDLTRLHLRENELVGN 496

Query: 658 ISSSIGNCTFLKVLDLSYSSLSGVIPASLGQLTRLQSLHLNNNKLTGNLPSSFQNLTSLE 717
           I +S+GNC  + V+DL+ + LSG IP+S G LT L+   + NN L GNLP S  NL +L 
Sbjct: 497 IPASLGNCHQMTVIDLADNQLSGSIPSSFGFLTALELFMIYNNSLQGNLPDSLINLKNLT 556

Query: 718 TLDLGNNRFSGNIPSLLG-----------NGFVG-----------LRILSLRSNAFSGEI 755
            ++  +N+F+G+I  L G           NGF G           L  L L  N F+G I
Sbjct: 557 RINFSSNKFNGSISPLCGSSSYLSFDVTENGFEGDIPLELGKSTNLDRLRLGKNQFTGRI 616

Query: 756 PSKLSNLSSLQVLDLAENNLTGSIPGSVGDLKAMAHVQNIVKYL------------LFGR 803
           P     +S L +LD++ N+L+G IP  +G  K + H+     YL            L G 
Sbjct: 617 PRTFGKISELSLLDISRNSLSGIIPVELGLCKKLTHIDLNNNYLSGVIPTWLGKLPLLGE 676

Query: 804 YR---------------------GIYYEENLVINTKGSSKDTPRLFHFIDLSGNNLHGDF 842
            +                      ++ + N +  +        +  + ++L  N L G  
Sbjct: 677 LKLSSNKFVGSLPTEIFSLTNILTLFLDGNSLNGSIPQEIGNLQALNALNLEENQLSGPL 736

Query: 843 PTQLTKLVGLVVLNLSRNHIGGQIPENISGLHQLAS-LDLSSNNLSGGIPSSLSSLSFLG 901
           P+ + KL  L  L LSRN + G+IP  I  L  L S LDLS NN +G IPS++S+L  L 
Sbjct: 737 PSTIGKLSKLFELRLSRNALTGEIPVEIGQLQDLQSALDLSYNNFTGRIPSTISTLPKLE 796

Query: 902 YINLSRNQLSGKIP------------------FEGHM----TTFDASSFAGNPGLCGDPL 939
            ++LS NQL G++P                   EG +    + + A +F GN GLCG PL
Sbjct: 797 SLDLSHNQLVGEVPGQIGDMKSLGYLNLSYNNLEGKLKKQFSRWQADAFVGNAGLCGSPL 856

Together with GSO1, receptor-like serine/threonine-kinase required during the development of the epidermal surface in embryos and cotyledons. Involved in the nuclear division phase of megagametogenesis.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|C0LGQ5|GSO1_ARATH LRR receptor-like serine/threonine-protein kinase GSO1 OS=Arabidopsis thaliana GN=GSO1 PE=2 SV=1

 Score =  305 bits (781), Expect = 1e-81,   Method: Compositional matrix adjust.
 Identities = 300/939 (31%), Positives = 451/939 (48%), Gaps = 142/939 (15%)

Query: 35  NDLDALIDFKNGL------EDPESRLASWKGSNC--CQWHGISCDDDTG--AIVAINLGN 84
           NDL  L++ K  L      +DP   L  W   N   C W G++CD+ TG   ++A+NL  
Sbjct: 25  NDLQTLLEVKKSLVTNPQEDDP---LRQWNSDNINYCSWTGVTCDN-TGLFRVIALNL-- 78

Query: 85  PYHVVNSDSSGSLLEYLDLSFNTFNDIPIPEFLGSLENLQYLNLSEAGFTGVVPSSLGNL 144
                    +GS                I  + G  +NL +L+LS     G +P++L NL
Sbjct: 79  ----TGLGLTGS----------------ISPWFGRFDNLIHLDLSSNNLVGPIPTALSNL 118

Query: 145 HRLQYFDVSAELFA--LSADSLDWLTGLVSLKHLAMNRVDLSLVGS--EWLGILKNLPNL 200
             L+    S  LF+  L+ +    L  LV+++ L +   D  LVG   E LG   NL NL
Sbjct: 119 TSLE----SLFLFSNQLTGEIPSQLGSLVNIRSLRIG--DNELVGDIPETLG---NLVNL 169

Query: 201 TELHLSVCGLTGSITSITPVNLTSPAVLDLSLNHFNSLFPNWLVNISTLVYVDLSDCDLY 260
             L L+ C LTG I S     L     L L  N+     P  L N S L     ++  L 
Sbjct: 170 QMLALASCRLTGPIPSQLG-RLVRVQSLILQDNYLEGPIPAELGNCSDLTVFTAAENMLN 228

Query: 261 GRIPIGFGELPNLQYLSLAGNNNLSGSC-SQLFRGSWKKIQILNFASNKLHGKLPSSVAN 319
           G IP   G L NL+ L+LA NN+L+G   SQL  G   ++Q L+  +N+L G +P S+A+
Sbjct: 229 GTIPAELGRLENLEILNLA-NNSLTGEIPSQL--GEMSQLQYLSLMANQLQGLIPKSLAD 285

Query: 320 MTSLTNFDLFDKKVEGGIPSSIARLCYLKEFDLSGNNLTGSLPE------------ILQG 367
           + +L   DL    + G IP     +  L +  L+ N+L+GSLP+            +L G
Sbjct: 286 LGNLQTLDLSANNLTGEIPEEFWNMSQLLDLVLANNHLSGSLPKSICSNNTNLEQLVLSG 345

Query: 368 TDLCVS---SNSPLPSLISMRLGNNHLKGKLPEWLSQLENLVELTLSYNLLQGPIPASLG 424
           T L        S   SL  + L NN L G +PE L +L  L +L L  N L+G +  S+ 
Sbjct: 346 TQLSGEIPVELSKCQSLKQLDLSNNSLAGSIPEALFELVELTDLYLHNNTLEGTLSPSIS 405

Query: 425 NLKNLTKLNLPGNQLNGTLPETLGSLPELSVLDVSSNSLTGIISEIHFSRLSKLKFLGLS 484
           NL NL  L L  N L G LP+ + +L +L VL +  N  +G I +      + LK + + 
Sbjct: 406 NLTNLQWLVLYHNNLEGKLPKEISALRKLEVLFLYENRFSGEIPQ-EIGNCTSLKMIDMF 464

Query: 485 SNSFILNVSSSWIPPFQVQSLNMRSCQLGPSFPSWLKTQQGVSFLDFSNASISGPIPNWF 544
            N F   +  S     ++  L++R  +L    P+ L     ++ LD ++  +SG IP+ F
Sbjct: 465 GNHFEGEIPPSIGRLKELNLLHLRQNELVGGLPASLGNCHQLNILDLADNQLSGSIPSSF 524

Query: 545 WDISSKLSLLNVSLNQLQGQLPNPL-NIAPFADVDFRSNLLEGPI-PLPIVEIEL-LDLS 601
             +   L  L +  N LQG LP+ L ++     ++   N L G I PL      L  D++
Sbjct: 525 GFLKG-LEQLMLYNNSLQGNLPDSLISLRNLTRINLSHNRLNGTIHPLCGSSSYLSFDVT 583

Query: 602 NNHFSGPIPQNISGSMPNLIFLSVSGNRLTGKIPGSIGEMQLLQVIDLSRNSISGSISSS 661
           NN F   IP  + G+  NL  L +  N+LTGKIP ++G+++ L ++D+S N+++G+I   
Sbjct: 584 NNGFEDEIPLEL-GNSQNLDRLRLGKNQLTGKIPWTLGKIRELSLLDMSSNALTGTIPLQ 642

Query: 662 IGNCTFLKVLDLSYSSLSGVIPASLGQLTRLQSLHLNNNKLTGNLPSSFQNLTSLETLDL 721
           +  C  L  +DL+ + LSG IP  LG+L++L  L L++N+   +LP+   N T       
Sbjct: 643 LVLCKKLTHIDLNNNFLSGPIPPWLGKLSQLGELKLSSNQFVESLPTELFNCTK------ 696

Query: 722 GNNRFSGNIPSLLGNGFVGLRILSLRSNAFSGEIPSKLSNLSSLQVLDLAENNLTGSIPG 781
                              L +LSL  N+ +G IP ++ NL +L VL+L +N  +GS+P 
Sbjct: 697 -------------------LLVLSLDGNSLNGSIPQEIGNLGALNVLNLDKNQFSGSLPQ 737

Query: 782 SVGDLKAMAHVQNIVKYLLFGRYRGIYYEENLVINTKGSSKDTPRLFHFIDLSGNNLHGD 841
           ++G L  +                   YE                    + LS N+L G+
Sbjct: 738 AMGKLSKL-------------------YE--------------------LRLSRNSLTGE 758

Query: 842 FPTQLTKLVGLV-VLNLSRNHIGGQIPENISGLHQLASLDLSSNNLSGGIPSSLSSLSFL 900
            P ++ +L  L   L+LS N+  G IP  I  L +L +LDLS N L+G +P S+  +  L
Sbjct: 759 IPVEIGQLQDLQSALDLSYNNFTGDIPSTIGTLSKLETLDLSHNQLTGEVPGSVGDMKSL 818

Query: 901 GYINLSRNQLSGKIPFEGHMTTFDASSFAGNPGLCGDPL 939
           GY+N+S N L GK+  +   + + A SF GN GLCG PL
Sbjct: 819 GYLNVSFNNLGGKL--KKQFSRWPADSFLGNTGLCGSPL 855

Together with GSO2, receptor-like serine/threonine-kinase required during the development of the epidermal surface in embryos and cotyledons.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9C9H7|RLP12_ARATH Receptor-like protein 12 OS=Arabidopsis thaliana GN=RLP12 PE=2 SV=2

 Score =  288 bits (738), Expect = 1e-76,   Method: Compositional matrix adjust.
 Identities = 244/762 (32%), Positives = 374/762 (49%), Gaps = 99/762 (12%)

Query: 282 NNLSGSCSQLFRGSWKKIQILNFASNKLHGKLPSSVANMTSLTNFDLFDKKVEGGIPSSI 341
           NN   + S LF+  +  ++ L+  +  L+G++PSS+ N++ LT  +L+  K  G IP+SI
Sbjct: 97  NNYLKTNSSLFKLQY--LRHLDLTNCNLYGEIPSSLGNLSHLTLVNLYFNKFVGEIPASI 154

Query: 342 ARLCYLKEFDLSGNNLTGSLPEILQGTDLCVSSNSPLPSLISMRLGNNHLKGKLPEWLSQ 401
             L  L+   L+ N LTG +P          SS   L  L+++ L +N L GK+P+ +  
Sbjct: 155 GNLNQLRHLILANNVLTGEIP----------SSLGNLSRLVNLELFSNRLVGKIPDSIGD 204

Query: 402 LENLVELTLSYNLLQGPIPASLGNLKNLTKLNLPGNQLNGTLPETLGSLPELSVLDVSSN 461
           L+ L  L+L+ N L G IP+SLGNL NL  L L  NQL G +P ++G+L EL V+   +N
Sbjct: 205 LKQLRNLSLASNNLIGEIPSSLGNLSNLVHLVLTHNQLVGEVPASIGNLIELRVMSFENN 264

Query: 462 SLTGIISEIHFSRLSKLKFLGLSSNSFILNVSSSWIPPFQVQSLNMRSCQLGPSFPSWLK 521
           SL+G I  I F+ L+KL    LSSN+F                          +FP  + 
Sbjct: 265 SLSGNIP-ISFANLTKLSIFVLSSNNFT------------------------STFPFDMS 299

Query: 522 TQQGVSFLDFSNASISGPIPNWFWDISSKLSLLNVSLNQLQG--QLPNPLNIAPFADVDF 579
               + + D S  S SGP P     I S L  + +  NQ  G  +  N  +     D+  
Sbjct: 300 IFHNLEYFDVSYNSFSGPFPKSLLLIPS-LESIYLQENQFTGPIEFANTSSSTKLQDLIL 358

Query: 580 RSNLLEGPIPLPI---VEIELLDLSNNHFSGPIPQNISGSMPNLIFLSVSGNRLTGKIPG 636
             N L GPIP  I   + +E LD+S+N+F+G IP  IS  + NL+ L +S N L G++P 
Sbjct: 359 GRNRLHGPIPESISRLLNLEELDISHNNFTGAIPPTIS-KLVNLLHLDLSKNNLEGEVPA 417

Query: 637 SI--------------------GEMQLLQVIDLSRNSISGSISSSIGNCTFLKVLDLSYS 676
            +                     E  L++ +DL+ NS  G I   I   + L  LDLS +
Sbjct: 418 CLWRLNTMVLSHNSFSSFENTSQEEALIEELDLNSNSFQGPIPYMICKLSSLGFLDLSNN 477

Query: 677 SLSGVIPASLGQLT-RLQSLHLNNNKLTGNLPSSFQNLTSLETLDLGNNRFSGNIPSLLG 735
             SG IP+ +   +  ++ L+L +N  +G LP  F   T L +LD+ +N+  G  P  L 
Sbjct: 478 LFSGSIPSCIRNFSGSIKELNLGDNNFSGTLPDIFSKATELVSLDVSHNQLEGKFPKSLI 537

Query: 736 N-----------------------GFVGLRILSLRSNAFSGEIPSKLSNL--SSLQVLDL 770
           N                           L +L+LRSN F G +  + +++   SL+++D+
Sbjct: 538 NCKALELVNVESNKIKDIFPSWLESLPSLHVLNLRSNKFYGPLYHRHASIGFQSLRIIDI 597

Query: 771 AENNLTGSIPGSV-GDLKAMAHV-QNIVKYLL-FGRYRGIYYEENLVINTKG---SSKDT 824
           + NN +G++P     + K M  + + + +Y+  F RY   YY E  ++N KG   S +  
Sbjct: 598 SHNNFSGTLPPYYFSNWKDMTTLTEEMDQYMTEFWRYADSYYHEMEMVN-KGVDMSFERI 656

Query: 825 PRLFHFIDLSGNNLHGDFPTQLTKLVGLVVLNLSRNHIGGQIPENISGLHQLASLDLSSN 884
            R F  ID SGN ++G+ P  L  L  L VLNLS N     IP  ++ L +L +LD+S N
Sbjct: 657 RRDFRAIDFSGNKINGNIPESLGYLKELRVLNLSGNAFTSVIPRFLANLTKLETLDISRN 716

Query: 885 NLSGGIPSSLSSLSFLGYINLSRNQLSGKIPFEGHMTTFDASSFAGNPGLCGDPLPVKCQ 944
            LSG IP  L++LSFL Y+N S N L G +P          SSF  NPGL G  L   C+
Sbjct: 717 KLSGQIPQDLAALSFLSYMNFSHNLLQGPVPRGTQFQRQKCSSFLDNPGLYG--LEDICR 774

Query: 945 DDESDKGGNVVEDDNEDEFIDKWFYFSLGLGFAAGIIVPMFI 986
           D  +    + + +D  +   + + + +  + +  G++  + I
Sbjct: 775 DTGALNPTSQLPEDLSEAEENMFNWVAAAIAYGPGVLCGLVI 816

Involved in the perception of CLV3 and CLV3-like peptides, that act as extracellular signals regulating meristems maintenance.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SHI2|Y1723_ARATH Leucine-rich repeat receptor-like serine/threonine-protein kinase At1g17230 OS=Arabidopsis thaliana GN=At1g17230 PE=2 SV=2

 Score =  281 bits (719), Expect = 2e-74,   Method: Compositional matrix adjust.
 Identities = 226/715 (31%), Positives = 345/715 (48%), Gaps = 66/715 (9%)

Query: 231 SLNHFNSLFPNW----LVNISTLVYVDLSDCDLYGRIPIGFGELPNLQYLSLAGNNNLSG 286
           S N  +S   NW      ++ T+  VDL+  +L G +     +L  L+ L+++  N +SG
Sbjct: 47  SWNQLDSNPCNWTGIACTHLRTVTSVDLNGMNLSGTLSPLICKLHGLRKLNVS-TNFISG 105

Query: 287 SCSQLFRGSWKKIQILNFASNKLHGKLPSSVANMTSLTNFDLFDKKVEGGIPSSIARLCY 346
              Q      + +++L+  +N+ HG +P  +  + +L    L +  + G IP  I  L  
Sbjct: 106 PIPQDL-SLCRSLEVLDLCTNRFHGVIPIQLTMIITLKKLYLCENYLFGSIPRQIGNLSS 164

Query: 347 LKEFDLSGNNLTGSLPEILQGTDLCVSSNSPLPSLISMRLGNNHLKGKLPEWLSQLENLV 406
           L+E  +  NNLTG +P           S + L  L  +R G N   G +P  +S  E+L 
Sbjct: 165 LQELVIYSNNLTGVIP----------PSMAKLRQLRIIRAGRNGFSGVIPSEISGCESLK 214

Query: 407 ELTLSYNLLQGPIPASLGNLKNLTKLNLPGNQLNGTLPETLGSLPELSVLDVSSNSLTGI 466
            L L+ NLL+G +P  L  L+NLT L L  N+L+G +P ++G++  L VL +  N  TG 
Sbjct: 215 VLGLAENLLEGSLPKQLEKLQNLTDLILWQNRLSGEIPPSVGNISRLEVLALHENYFTGS 274

Query: 467 ISEIHFSRLSKLKFLGLSSNSFILNVSSSWIPPFQVQSLNMRSCQLGPSFPSWLKTQQGV 526
           I      +L+K+K L L +N     +            ++    QL    P        +
Sbjct: 275 IPR-EIGKLTKMKRLYLYTNQLTGEIPREIGNLIDAAEIDFSENQLTGFIPKEFGHILNL 333

Query: 527 SFLDFSNASISGPIPNWFWDISSKLSLLNVSLNQLQGQLPNPLNIAPF-ADVDFRSNLLE 585
             L      + GPIP    +++  L  L++S+N+L G +P  L   P+  D+    N LE
Sbjct: 334 KLLHLFENILLGPIPRELGELT-LLEKLDLSINRLNGTIPQELQFLPYLVDLQLFDNQLE 392

Query: 586 GPIPLPIV----EIELLDLSNNHFSGPIPQNISGSMPNLIFLSVSGNRLTGKIPGSIGEM 641
           G IP P++       +LD+S N  SGPIP +       LI LS+  N+L+G IP  +   
Sbjct: 393 GKIP-PLIGFYSNFSVLDMSANSLSGPIPAHFC-RFQTLILLSLGSNKLSGNIPRDLKTC 450

Query: 642 QLLQVIDLSRNSISGSISSSIGNCTFLKVLDLSYSSLSGVIPASLGQLTRLQSLHLNNNK 701
           + L  + L  N ++GS+   + N   L  L+L  + LSG I A LG+L  L+ L L NN 
Sbjct: 451 KSLTKLMLGDNQLTGSLPIELFNLQNLTALELHQNWLSGNISADLGKLKNLERLRLANNN 510

Query: 702 LTGNLPSSFQNLTSLETLDLGNNRFSGNIPSLLGNGFVGLRILSLRSNAFSGEIPSKLSN 761
            TG +P    NLT +   ++ +N+ +G+IP  LG+  V ++ L L  N FSG I  +L  
Sbjct: 511 FTGEIPPEIGNLTKIVGFNISSNQLTGHIPKELGS-CVTIQRLDLSGNKFSGYIAQELGQ 569

Query: 762 LSSLQVLDLAENNLTGSIPGSVGDLKAMAHVQNIVKYLLFGRYRGIYYEENLVINTKGSS 821
           L  L++L L++N LTG IP S GDL  +  +Q                            
Sbjct: 570 LVYLEILRLSDNRLTGEIPHSFGDLTRLMELQ---------------------------- 601

Query: 822 KDTPRLFHFIDLSGNNLHGDFPTQLTKLVGLVV-LNLSRNHIGGQIPENISGLHQLASLD 880
                      L GN L  + P +L KL  L + LN+S N++ G IP+++  L  L  L 
Sbjct: 602 -----------LGGNLLSENIPVELGKLTSLQISLNISHNNLSGTIPDSLGNLQMLEILY 650

Query: 881 LSSNNLSGGIPSSLSSLSFLGYINLSRNQLSGKIPFEGHMTTFDASSFAGNPGLC 935
           L+ N LSG IP+S+ +L  L   N+S N L G +P        D+S+FAGN GLC
Sbjct: 651 LNDNKLSGEIPASIGNLMSLLICNISNNNLVGTVPDTAVFQRMDSSNFAGNHGLC 705

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9LYN8|EXS_ARATH Leucine-rich repeat receptor protein kinase EXS OS=Arabidopsis thaliana GN=EXS PE=1 SV=1

 Score =  277 bits (709), Expect = 3e-73,   Method: Compositional matrix adjust.
 Identities = 255/791 (32%), Positives = 383/791 (48%), Gaps = 61/791 (7%)

Query: 228 LDLSLNHFNSLFPNWLVNISTLVYVDLSDCDLYGRIPIGFGELPNLQYLSLAGNNNLSGS 287
           L L+ N F+   P  + N+  L  +DLS   L G +P    ELP L YL L+ +N+ SGS
Sbjct: 94  LCLAGNQFSGKIPPEIWNLKHLQTLDLSGNSLTGLLPRLLSELPQLLYLDLS-DNHFSGS 152

Query: 288 CSQLFRGSWKKIQILNFASNKLHGKLPSSVANMTSLTNFDLFDKKVEGGIPSSIARLCYL 347
               F  S   +  L+ ++N L G++P  +  +++L+N  +      G IPS I  +  L
Sbjct: 153 LPPSFFISLPALSSLDVSNNSLSGEIPPEIGKLSNLSNLYMGLNSFSGQIPSEIGNISLL 212

Query: 348 KEFDLSGNNLTGSLPEILQGTDLCVSSNSPLPSLISMRLGNNHLKGKLPEWLSQLENLVE 407
           K F        G LP+ +          S L  L  + L  N LK  +P+   +L NL  
Sbjct: 213 KNFAAPSCFFNGPLPKEI----------SKLKHLAKLDLSYNPLKCSIPKSFGELHNLSI 262

Query: 408 LTLSYNLLQGPIPASLGNLKNLTKLNLPGNQLNGTLPETLGSLPELSVLDVSSNSLTGII 467
           L L    L G IP  LGN K+L  L L  N L+G LP  L  +P L+      N L+G +
Sbjct: 263 LNLVSAELIGLIPPELGNCKSLKSLMLSFNSLSGPLPLELSEIPLLT-FSAERNQLSGSL 321

Query: 468 SEIHFSRLSKLKFLG---LSSNSFILNVSSSWIPPFQVQSLNMRSCQLGPSFPSWLKTQQ 524
                S + K K L    L++N F   +         ++ L++ S  L  S P  L    
Sbjct: 322 P----SWMGKWKVLDSLLLANNRFSGEIPHEIEDCPMLKHLSLASNLLSGSIPRELCGSG 377

Query: 525 GVSFLDFSNASISGPIPNWFWDISSKLSLLNVSLNQLQGQLPNPLNIAPFADVDFRSNLL 584
            +  +D S   +SG I   F D  S L  L ++ NQ+ G +P  L   P   +D  SN  
Sbjct: 378 SLEAIDLSGNLLSGTIEEVF-DGCSSLGELLLTNNQINGSIPEDLWKLPLMALDLDSNNF 436

Query: 585 EGPIPLPIVE-IELLDL--SNNHFSGPIPQNISGSMPNLIFLSVSGNRLTGKIPGSIGEM 641
            G IP  + +   L++   S N   G +P  I G+  +L  L +S N+LTG+IP  IG++
Sbjct: 437 TGEIPKSLWKSTNLMEFTASYNRLEGYLPAEI-GNAASLKRLVLSDNQLTGEIPREIGKL 495

Query: 642 QLLQVIDLSRNSISGSISSSIGNCTFLKVLDLSYSSLSGVIPASLGQLTRLQSLHLNNNK 701
             L V++L+ N   G I   +G+CT L  LDL  ++L G IP  +  L +LQ L L+ N 
Sbjct: 496 TSLSVLNLNANMFQGKIPVELGDCTSLTTLDLGSNNLQGQIPDKITALAQLQCLVLSYNN 555

Query: 702 LTGNLPS---------SFQNLTSLE---TLDLGNNRFSGNIPSLLGNGFVGLRILSLRSN 749
           L+G++PS            +L+ L+     DL  NR SG IP  LG   V + I SL +N
Sbjct: 556 LSGSIPSKPSAYFHQIEMPDLSFLQHHGIFDLSYNRLSGPIPEELGECLVLVEI-SLSNN 614

Query: 750 AFSGEIPSKLSNLSSLQVLDLAENNLTGSIPGSVGD---LKAMAHVQNIV------KYLL 800
             SGEIP+ LS L++L +LDL+ N LTGSIP  +G+   L+ +    N +       + L
Sbjct: 615 HLSGEIPASLSRLTNLTILDLSGNALTGSIPKEMGNSLKLQGLNLANNQLNGHIPESFGL 674

Query: 801 FGRYRGIYYEENLVINTKGSSKDTPRLFHFIDLSGNNLHGDFPTQLTKLVGLVVLNLSRN 860
            G    +   +N +     +S    +    +DLS NNL G+  ++L+ +  LV L + +N
Sbjct: 675 LGSLVKLNLTKNKLDGPVPASLGNLKELTHMDLSFNNLSGELSSELSTMEKLVGLYIEQN 734

Query: 861 HIGGQIPENISGLHQLASLDLSSNNLSGGIPSSLSSLSFLGYINLSRNQLSGKIPFEGHM 920
              G+IP  +  L QL  LD+S N LSG IP+ +  L  L ++NL++N L G++P +G  
Sbjct: 735 KFTGEIPSELGNLTQLEYLDVSENLLSGEIPTKICGLPNLEFLNLAKNNLRGEVPSDGVC 794

Query: 921 TTFDASSFAGNPGLCGDPLPVKCQDDESDKGGNVVEDDNEDEFIDKWFYFSLGLGFAAGI 980
                +  +GN  LCG  +   C+ + +             +    W    L LGF   I
Sbjct: 795 QDPSKALLSGNKELCGRVVGSDCKIEGT-------------KLRSAWGIAGLMLGFT--I 839

Query: 981 IVPMFIFSIKK 991
           IV +F+FS+++
Sbjct: 840 IVFVFVFSLRR 850

Receptor with a serine/threonine-protein kinase activity required for the specification of the correct number of male archesporial initials and for the subsequent specification of tapetal and middle cell layer identities. In seeds, required for enhancing cell size and the rate of embryonic development.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9LP24|Y1571_ARATH Probable leucine-rich repeat receptor-like protein kinase At1g35710 OS=Arabidopsis thaliana GN=At1g35710 PE=2 SV=1

 Score =  272 bits (696), Expect = 8e-72,   Method: Compositional matrix adjust.
 Identities = 257/774 (33%), Positives = 382/774 (49%), Gaps = 93/774 (12%)

Query: 36  DLDALIDFKNGLEDPESRLASW-------KGSNCCQWHGISCDDDTGAIVAINLGNPYHV 88
           + +AL+ +K+   +  S+L+SW          +C  W+G+SC+   G+I  +NL      
Sbjct: 33  EANALLKWKSTFTN-SSKLSSWVHDANTNTSFSCTSWYGVSCNS-RGSIEELNL------ 84

Query: 89  VNSDSSGSLLEYLDLSFNTFNDIPIPEFLGSLENLQYLNLSEAGFTGVVPSSLGNLHRLQ 148
            N+   G           TF D P   F+ SL NL Y++LS    +G +P   GNL +L 
Sbjct: 85  TNTGIEG-----------TFQDFP---FI-SLSNLAYVDLSMNLLSGTIPPQFGNLSKLI 129

Query: 149 YFDVSAELFALSADSLDWLTGLVS-----LKHLAMNRVDLSLVGSEWLGILKNLPNLTEL 203
           YFD+S           + LTG +S     LK+L +  +  + + S     L N+ ++T+L
Sbjct: 130 YFDLST----------NHLTGEISPSLGNLKNLTVLYLHQNYLTSVIPSELGNMESMTDL 179

Query: 204 HLSVCGLTGSITSITPVNLTSPAVLDLSLNHFNSLFPNWLVNISTLVYVDLSDCDLYGRI 263
            LS   LTGSI S +  NL +  VL L  N+   + P  L N+ ++  + LS   L G I
Sbjct: 180 ALSQNKLTGSIPS-SLGNLKNLMVLYLYENYLTGVIPPELGNMESMTDLALSQNKLTGSI 238

Query: 264 PIGFGELPNLQYLSLAGNNNLSGSCSQLFRGSWKKIQILNFASNKLHGKLPSSVANMTSL 323
           P   G L NL  L L   N L+G       G+ + +  L  + NKL G +PSS+ N+ +L
Sbjct: 239 PSTLGNLKNLMVLYLY-ENYLTGVIPPEI-GNMESMTNLALSQNKLTGSIPSSLGNLKNL 296

Query: 324 TNFDLFDKKVEGGIPSSIARLCYLKEFDLSGNNLTGSLPEILQGTDLCVSSNSPLPSLIS 383
           T   LF   + GGIP  +  +  + + +LS N LTGS+P          SS   L +L  
Sbjct: 297 TLLSLFQNYLTGGIPPKLGNIESMIDLELSNNKLTGSIP----------SSLGNLKNLTI 346

Query: 384 MRLGNNHLKGKLPEWLSQLENLVELTLSYNLLQGPIPASLGNLKNLTKLNLPGNQLNGTL 443
           + L  N+L G +P  L  +E++++L L+ N L G IP+S GNLKNLT L L  N L G +
Sbjct: 347 LYLYENYLTGVIPPELGNMESMIDLQLNNNKLTGSIPSSFGNLKNLTYLYLYLNYLTGVI 406

Query: 444 PETLGSLPELSVLDVSSNSLTGIISEIHFSRLSKLKFLGLSSNSFILNVSSSWIPPFQVQ 503
           P+ LG++  +  LD+S N LTG + +  F   +KL+ L L  N       S  IPP    
Sbjct: 407 PQELGNMESMINLDLSQNKLTGSVPD-SFGNFTKLESLYLRVNHL-----SGAIPPGVAN 460

Query: 504 SLNMRSCQLGPS-----FPSWLKTQQGVSFLDFSNASISGPIPNWFWDISSKLSLLNVSL 558
           S ++ +  L  +     FP  +   + +  +      + GPIP    D  S +    +  
Sbjct: 461 SSHLTTLILDTNNFTGFFPETVCKGRKLQNISLDYNHLEGPIPKSLRDCKSLIRARFLG- 519

Query: 559 NQLQGQLPNPLNIAPFADVDFRSNLLEGPIPLPIVEIELLDLSNNHFSGPIPQNISGSMP 618
           N+  G +     I P  D++F                  +D S+N F G I  N   S P
Sbjct: 520 NKFTGDIFEAFGIYP--DLNF------------------IDFSHNKFHGEISSNWEKS-P 558

Query: 619 NLIFLSVSGNRLTGKIPGSIGEMQLLQVIDLSRNSISGSISSSIGNCTFLKVLDLSYSSL 678
            L  L +S N +TG IP  I  M  L  +DLS N++ G +  +IGN T L  L L+ + L
Sbjct: 559 KLGALIMSNNNITGAIPTEIWNMTQLVELDLSTNNLFGELPEAIGNLTNLSRLRLNGNQL 618

Query: 679 SGVIPASLGQLTRLQSLHLNNNKLTGNLPSSFQNLTSLETLDLGNNRFSGNIPSLLGNGF 738
           SG +PA L  LT L+SL L++N  +  +P +F +   L  ++L  N+F G+IP L  +  
Sbjct: 619 SGRVPAGLSFLTNLESLDLSSNNFSSEIPQTFDSFLKLHDMNLSRNKFDGSIPRL--SKL 676

Query: 739 VGLRILSLRSNAFSGEIPSKLSNLSSLQVLDLAENNLTGSIPGSVGDLKAMAHV 792
             L  L L  N   GEIPS+LS+L SL  LDL+ NNL+G IP +   + A+ +V
Sbjct: 677 TQLTQLDLSHNQLDGEIPSQLSSLQSLDKLDLSHNNLSGLIPTTFEGMIALTNV 730

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|O49318|Y2317_ARATH Probable leucine-rich repeat receptor-like protein kinase At2g33170 OS=Arabidopsis thaliana GN=At2g33170 PE=2 SV=1

 Score =  264 bits (675), Expect = 2e-69,   Method: Compositional matrix adjust.
 Identities = 233/745 (31%), Positives = 351/745 (47%), Gaps = 109/745 (14%)

Query: 200 LTELHLSVCGLTGSITSITPVNLTSPAVLDLSLNHFNSLFPNWLVNISTLVYVDLSDCDL 259
           +T L LS   L+G I S +   L +   L+L+ N      P  + N S L  + L++   
Sbjct: 87  VTSLDLSSMNLSG-IVSPSIGGLVNLVYLNLAYNALTGDIPREIGNCSKLEVMFLNNNQF 145

Query: 260 YGRIPIGFGELPNLQYLSLAGNNNLSGSCSQLFRGSWKKIQILNFASNKLHGKLPSSVAN 319
            G IP+   +L  L+  ++  NN LSG   +   G    ++ L   +N L G LP S+ N
Sbjct: 146 GGSIPVEINKLSQLRSFNIC-NNKLSGPLPEEI-GDLYNLEELVAYTNNLTGPLPRSLGN 203

Query: 320 MTSLTNFDLFDKKVEGGIPSSIARLCYLKEFDLSGNNLTGSLPEILQGTDLCVSSNSPLP 379
           +  LT F        G IP+ I +   LK   L+ N ++G LP+ +            L 
Sbjct: 204 LNKLTTFRAGQNDFSGNIPTEIGKCLNLKLLGLAQNFISGELPKEI----------GMLV 253

Query: 380 SLISMRLGNNHLKGKLPEWLSQLENLVELTLSYNLLQGPIPASLGNLKNLTKLNLPGNQL 439
            L  + L  N   G +P+ +  L +L  L L  N L GPIP+ +GN+K+L KL L  NQL
Sbjct: 254 KLQEVILWQNKFSGFIPKDIGNLTSLETLALYGNSLVGPIPSEIGNMKSLKKLYLYQNQL 313

Query: 440 NGTLPETLGSLPELSVLDVSSNSLTGIISEIHFSRLSKLKFLGLSSNSFILNVSSSWIPP 499
           NGT+P+ LG L ++  +D S N L+G I  +  S++S+L+ L L  N             
Sbjct: 314 NGTIPKELGKLSKVMEIDFSENLLSGEIP-VELSKISELRLLYLFQN------------- 359

Query: 500 FQVQSLNMRSCQLGPSFPSWLKTQQGVSFLDFSNASISGPIPNWFWDISSKLSLLNVSLN 559
                      +L    P+ L   + ++ LD S  S++GPIP  F +++S +  L +  N
Sbjct: 360 -----------KLTGIIPNELSKLRNLAKLDLSINSLTGPIPPGFQNLTS-MRQLQLFHN 407

Query: 560 QLQGQLPNPLNI-APFADVDFRSNLLEGPIPLPIVE---IELLDLSNNHFSGPIPQNISG 615
            L G +P  L + +P   VDF  N L G IP  I +   + LL+L +N   G IP  +  
Sbjct: 408 SLSGVIPQGLGLYSPLWVVDFSENQLSGKIPPFICQQSNLILLNLGSNRIFGNIPPGVL- 466

Query: 616 SMPNLIFLSVSGNRLTGKIPGSIGEMQLLQVIDLSRNSISGSISSSIGNCTFLKVLDLSY 675
              +L+ L V GNRLTG+ P  + ++  L  I+L +N  SG +   IG C          
Sbjct: 467 RCKSLLQLRVVGNRLTGQFPTELCKLVNLSAIELDQNRFSGPLPPEIGTCQ--------- 517

Query: 676 SSLSGVIPASLGQLTRLQSLHLNNNKLTGNLPSSFQNLTSLETLDLGNNRFSGNIPSLLG 735
                          +LQ LHL  N+ + NLP+    L++L T ++ +N  +G IPS + 
Sbjct: 518 ---------------KLQRLHLAANQFSSNLPNEISKLSNLVTFNVSSNSLTGPIPSEIA 562

Query: 736 NGFVGLRILSLRSNAFSGEIPSKLSNLSSLQVLDLAENNLTGSIPGSVGDLKAMAHVQNI 795
           N  + L+ L L  N+F G +P +L +L  L++L L+EN  +G+IP ++G+L  +  +Q  
Sbjct: 563 NCKM-LQRLDLSRNSFIGSLPPELGSLHQLEILRLSENRFSGNIPFTIGNLTHLTELQ-- 619

Query: 796 VKYLLFGRYRGIYYEENLVINTKGSSKDTPRLFHFIDLSGNNLHGDFPTQLTKLVGL-VV 854
                                                + GN   G  P QL  L  L + 
Sbjct: 620 -------------------------------------MGGNLFSGSIPPQLGLLSSLQIA 642

Query: 855 LNLSRNHIGGQIPENISGLHQLASLDLSSNNLSGGIPSSLSSLSFLGYINLSRNQLSGKI 914
           +NLS N   G+IP  I  LH L  L L++N+LSG IP++  +LS L   N S N L+G++
Sbjct: 643 MNLSYNDFSGEIPPEIGNLHLLMYLSLNNNHLSGEIPTTFENLSSLLGCNFSYNNLTGQL 702

Query: 915 PFEGHMTTFDASSFAGNPGLCGDPL 939
           P          +SF GN GLCG  L
Sbjct: 703 PHTQIFQNMTLTSFLGNKGLCGGHL 727

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9ZPS9|BRL2_ARATH Serine/threonine-protein kinase BRI1-like 2 OS=Arabidopsis thaliana GN=BRL2 PE=1 SV=1

 Score =  259 bits (663), Expect = 7e-68,   Method: Compositional matrix adjust.
 Identities = 215/629 (34%), Positives = 309/629 (49%), Gaps = 93/629 (14%)

Query: 352 LSGNNLTGSLPEILQGTDLCVSSNSPLPSLISMRLGNNHLKGKLPEWLSQLENLVELT-- 409
           LS NN TG LP      DL +SS      L ++ L  N++ G +      L + V +T  
Sbjct: 159 LSYNNFTGKLP-----NDLFLSSKK----LQTLDLSYNNITGPISGLTIPLSSCVSMTYL 209

Query: 410 -LSYNLLQGPIPASLGNLKNLTKLNLPGNQLNGTLPETLGSLPELSVLDVSSNSLTGIIS 468
             S N + G I  SL N  NL  LNL  N  +G +P++ G L  L  LD+S N LTG I 
Sbjct: 210 DFSGNSISGYISDSLINCTNLKSLNLSYNNFDGQIPKSFGELKLLQSLDLSHNRLTGWIP 269

Query: 469 EIHFSRLSKLKFLGLSSNSFILNVSSSWIPPFQVQSLNMRSCQLGPSFPSWLKTQQGVSF 528
                    L+ L LS N+F     +  IP       ++ SC       SWL++      
Sbjct: 270 PEIGDTCRSLQNLRLSYNNF-----TGVIPE------SLSSC-------SWLQS------ 305

Query: 529 LDFSNASISGPIPNWFWDISSKLSLLNVSLNQLQGQLPNPLNIAPFADVDFRSNLLEGPI 588
           LD SN +ISGP PN        L +L +S N + G  P  ++                  
Sbjct: 306 LDLSNNNISGPFPNTILRSFGSLQILLLSNNLISGDFPTSISACK--------------- 350

Query: 589 PLPIVEIELLDLSNNHFSGPIPQNISGSMPNLIFLSVSGNRLTGKIPGSIGEMQLLQVID 648
                 + + D S+N FSG IP ++     +L  L +  N +TG+IP +I +   L+ ID
Sbjct: 351 -----SLRIADFSSNRFSGVIPPDLCPGAASLEELRLPDNLVTGEIPPAISQCSELRTID 405

Query: 649 LSRNSISGSISSSIGNCTFLKVLDLSYSSLSGVIPASLGQLTRLQSLHLNNNKLTGNLPS 708
           LS N ++G+I   IGN   L+     Y++++G IP  +G+L  L+ L LNNN+LTG +P 
Sbjct: 406 LSLNYLNGTIPPEIGNLQKLEQFIAWYNNIAGEIPPEIGKLQNLKDLILNNNQLTGEIPP 465

Query: 709 SFQNLTSLETLDLGNNRFSGNIPSLLGNGFVGLRILSLRSNAFSGEIPSKLSNLSSLQVL 768
            F N +++E +   +NR +G +P   G     L +L L +N F+GEIP +L   ++L  L
Sbjct: 466 EFFNCSNIEWVSFTSNRLTGEVPKDFGI-LSRLAVLQLGNNNFTGEIPPELGKCTTLVWL 524

Query: 769 DLAENNLTGSIPGSVGDL------------KAMAHVQNI------VKYLLFGRYRGIYYE 810
           DL  N+LTG IP  +G                MA V+N+      V  L+   + GI  E
Sbjct: 525 DLNTNHLTGEIPPRLGRQPGSKALSGLLSGNTMAFVRNVGNSCKGVGGLV--EFSGIRPE 582

Query: 811 ENLVINTKGSSKDTPRLF--------------HFIDLSGNNLHGDFPTQLTKLVGLVVLN 856
             L I +  S  D  R++               ++DLS N L G  P ++ +++ L VL 
Sbjct: 583 RLLQIPSLKSC-DFTRMYSGPILSLFTRYQTIEYLDLSYNQLRGKIPDEIGEMIALQVLE 641

Query: 857 LSRNHIGGQIPENISGLHQLASLDLSSNNLSGGIPSSLSSLSFLGYINLSRNQLSGKIPF 916
           LS N + G+IP  I  L  L   D S N L G IP S S+LSFL  I+LS N+L+G IP 
Sbjct: 642 LSHNQLSGEIPFTIGQLKNLGVFDASDNRLQGQIPESFSNLSFLVQIDLSNNELTGPIPQ 701

Query: 917 EGHMTTFDASSFAGNPGLCGDPLPVKCQD 945
            G ++T  A+ +A NPGLCG PLP +C++
Sbjct: 702 RGQLSTLPATQYANNPGLCGVPLP-ECKN 729

Receptor with a serine/threonine-protein kinase activity, which may transduce extracellular spatial and temporal signals into downstream cell differentiation responses in provascular and procambial cells. In contrast to BRI1, BRL1 and BRL3, it does not bind brassinolide.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9LVP0|Y5639_ARATH Probable leucine-rich repeat receptor-like protein kinase At5g63930 OS=Arabidopsis thaliana GN=At5g63930 PE=1 SV=1

 Score =  253 bits (645), Expect = 7e-66,   Method: Compositional matrix adjust.
 Identities = 238/756 (31%), Positives = 360/756 (47%), Gaps = 110/756 (14%)

Query: 190 WLGIL----KNLPNLTELHLSVCGLTGSITSITPVNLTSPAVLDLSLNHFNSLFPNWLVN 245
           W G++     + P +  L+LS   L+G + S +   L     LDLS N  +   P  + N
Sbjct: 61  WTGVMCSNYSSDPEVLSLNLSSMVLSGKL-SPSIGGLVHLKQLDLSYNGLSGKIPKEIGN 119

Query: 246 ISTLVYVDLSDCDLYGRIPIGFGELPNLQYLSLAGNNNLSGSCSQLFRGSWKKIQILNFA 305
            S+L  + L++    G IP+  G+L +L+ L +  NN +SGS            Q++ + 
Sbjct: 120 CSSLEILKLNNNQFDGEIPVEIGKLVSLENLIIY-NNRISGSLPVEIGNLLSLSQLVTY- 177

Query: 306 SNKLHGKLPSSVANMTSLTNFDLFDKKVEGGIPSSIARLCYLKEFDLSGNNLTGSLPEIL 365
           SN + G+LP S+ N+  LT+F      + G +PS I     L    L+ N L+G LP+ +
Sbjct: 178 SNNISGQLPRSIGNLKRLTSFRAGQNMISGSLPSEIGGCESLVMLGLAQNQLSGELPKEI 237

Query: 366 QGTDLCVSSNSPLPSLISMRLGNNHLKGKLPEWLSQLENLVELTLSYNLLQGPIPASLGN 425
                       L  L  + L  N   G +P  +S   +L  L L  N L GPIP  LG+
Sbjct: 238 ----------GMLKKLSQVILWENEFSGFIPREISNCTSLETLALYKNQLVGPIPKELGD 287

Query: 426 LKNLTKLNLPGNQLNGTLPETLGSLPELSVLDVSSNSLTGIISEIHFSRLSKLKFLGLSS 485
           L++L  L L  N LNGT+P  +G+L     +D S N+LTG I  +    +  L+ L L  
Sbjct: 288 LQSLEFLYLYRNGLNGTIPREIGNLSYAIEIDFSENALTGEIP-LELGNIEGLELLYLFE 346

Query: 486 NSFILNVSSSWIPPFQVQSLNMRSCQLGPSFPSWLKTQQGVSFLDFSNASISGPIPNWFW 545
           N                        QL  + P  L T + +S LD S  +++GPIP  F 
Sbjct: 347 N------------------------QLTGTIPVELSTLKNLSKLDLSINALTGPIPLGFQ 382

Query: 546 DISSKLSLLNVSLNQLQGQLPNPLNIAPFADVDFRSNLLEGPIPLPIVEIELLDLSNNHF 605
            +   L +L +  N L G +P  L    ++D                  + +LD+S+NH 
Sbjct: 383 YLRG-LFMLQLFQNSLSGTIPPKLGW--YSD------------------LWVLDMSDNHL 421

Query: 606 SGPIPQNISGSMPNLIFLSVSGNRLTGKIPGSIGEMQLLQVIDLSRNSISGSISSSIGNC 665
           SG IP  +     N+I L++  N L+G IP  I   + L  + L+RN++ G   S++   
Sbjct: 422 SGRIPSYLC-LHSNMIILNLGTNNLSGNIPTGITTCKTLVQLRLARNNLVGRFPSNLCKQ 480

Query: 666 TFLKVLDLSYSSLSGVIPASLGQLTRLQSLHLNNNKLTGNLPSSFQNLTSLETLDLGNNR 725
             +  ++L  +   G IP  +G  + LQ L L +N  TG LP     L+ L TL++ +N+
Sbjct: 481 VNVTAIELGQNRFRGSIPREVGNCSALQRLQLADNGFTGELPREIGMLSQLGTLNISSNK 540

Query: 726 FSGNIPSLLGNGFVGLRILSLRSNAFSGEIPSKLSNLSSLQVLDLAENNLTGSIPGSVGD 785
            +G +PS + N  + L+ L +  N FSG +PS++ +L  L++L L+ NNL+G+IP ++G+
Sbjct: 541 LTGEVPSEIFNCKM-LQRLDMCCNNFSGTLPSEVGSLYQLELLKLSNNNLSGTIPVALGN 599

Query: 786 LKAMAHVQNIVKYLLFGRYRGIYYEENLVINTKGSSKDTPRLFHFIDLSGNNLHGDFPTQ 845
           L  +  +Q                                       + GN  +G  P +
Sbjct: 600 LSRLTELQ---------------------------------------MGGNLFNGSIPRE 620

Query: 846 LTKLVGL-VVLNLSRNHIGGQIPENISGLHQLASLDLSSNNLSGGIPSSLSSL-SFLGYI 903
           L  L GL + LNLS N + G+IP  +S L  L  L L++NNLSG IPSS ++L S LGY 
Sbjct: 621 LGSLTGLQIALNLSYNKLTGEIPPELSNLVMLEFLLLNNNNLSGEIPSSFANLSSLLGY- 679

Query: 904 NLSRNQLSGKIPFEGHMTTFDASSFAGNPGLCGDPL 939
           N S N L+G IP    +     SSF GN GLCG PL
Sbjct: 680 NFSYNSLTGPIPL---LRNISMSSFIGNEGLCGPPL 712

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	1009
255554557	1010	serine/threonine-protein kinase bri1, pu	0.979	0.978	0.640	0.0
225466101	1035	PREDICTED: LRR receptor-like serine/thre	0.995	0.970	0.625	0.0
224055105	913	predicted protein [Populus trichocarpa]	0.884	0.976	0.603	0.0
449464040	1021	PREDICTED: probable LRR receptor-like se	0.986	0.974	0.581	0.0
359483180	1016	PREDICTED: LRR receptor-like serine/thre	0.979	0.972	0.565	0.0
359483304	1045	PREDICTED: LRR receptor-like serine/thre	0.980	0.946	0.560	0.0
359483186	1082	PREDICTED: LRR receptor-like serine/thre	0.994	0.926	0.569	0.0
359483302	1024	PREDICTED: LRR receptor-like serine/thre	0.974	0.959	0.545	0.0
359483174	1028	PREDICTED: LRR receptor-like serine/thre	0.974	0.956	0.540	0.0
359483308	1034	PREDICTED: LRR receptor-like serine/thre	0.973	0.949	0.533	0.0

>gi|255554557|ref|XP_002518317.1| serine/threonine-protein kinase bri1, putative [Ricinus communis] gi|223542537|gb|EEF44077.1| serine/threonine-protein kinase bri1, putative [Ricinus communis]

 Score = 1231 bits (3186), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 644/1006 (64%), Positives = 790/1006 (78%), Gaps = 18/1006 (1%)

Query: 17   ITSDYASYGASRFSNCSENDLDALIDFKNGLEDPESRLASWKGSNCCQWHGISCDDDTGA 76
            +T D+   G     +CS++DL+AL DFKNGL+D  +RL+SWKGSNCCQW GISC++ TGA
Sbjct: 2    LTRDFGCNGDEHNRSCSQSDLEALNDFKNGLKDSGNRLSSWKGSNCCQWQGISCNNRTGA 61

Query: 77   IVAINLGNPYHVVNSDS-SGSL---------LEYLDLSFNTFNDIPIPEFLGSLENLQYL 126
            + +I+L NPY V +  S SG L         L+YLDLS NTF+ +PIPEFLGSL++LQYL
Sbjct: 62   VNSIDLHNPYLVSSVYSLSGELRQSLLKLKSLQYLDLSLNTFDQVPIPEFLGSLQSLQYL 121

Query: 127  NLSEAGFTGVVPSSLGNLHRLQYFDVSAELFALSADSLDWLTGLVSLKHLAMNRVDLSLV 186
            NLS+AGF+GV+P +LGNL  LQ  DVS++   LS +S DW++GLVS+++LAM+ VDLS+ 
Sbjct: 122  NLSKAGFSGVIPPALGNLSSLQILDVSSQFSGLSVNSFDWVSGLVSIRYLAMSGVDLSMA 181

Query: 187  GSEWLGILKNLPNLTELHLSVCGLTGSITSITPVNLTSPAVLDLSLNHFNSLFPNWLVNI 246
            GS W+ +L  LP+LT L LS C L+GSI+S++PVN TS AVLDLS N+F S+FP WLVN+
Sbjct: 182  GSTWIEVLNMLPHLTNLQLSNCYLSGSISSLSPVNFTSLAVLDLSFNNFKSMFPGWLVNV 241

Query: 247  STLVYVDLSDCDLYGRIPIGFGELPNLQYLSLAGNNNLSGSCSQLFRGSWKKIQILNFAS 306
            S+L YVDLS+  LYGRIP+G  +LPNLQ+LSLA NNNLS SC QLF G WKKI++L+FA 
Sbjct: 242  SSLAYVDLSNGGLYGRIPLGLSQLPNLQFLSLAMNNNLSASCPQLFGGGWKKIEVLDFAL 301

Query: 307  NKLHGKLPSSVANMTSLTNFDLFDKKVEGGIPSSIARLCYLKEFDLSGNNLTGSLPEILQ 366
            N+LHGKLP+SV N++SLT FDLF   VEGGIP+SIA+LC L+ FDLSGNNLTGSLP++L 
Sbjct: 302  NRLHGKLPASVGNISSLTIFDLFVNSVEGGIPASIAKLCNLQRFDLSGNNLTGSLPKVLD 361

Query: 367  GTDLCVSSNSPLPSLISMRLGNNHLKGKLPEWLSQLENLVELTLSYNLLQGPIPASLGNL 426
            G +    SNSPLP+L+ ++L  N L G LP+WL QLENL+EL+L  NL QGPIPASLGNL
Sbjct: 362  GAN--CPSNSPLPNLLYLKLTGNRLTGNLPDWLGQLENLLELSLGSNLFQGPIPASLGNL 419

Query: 427  KNLTKLNLPGNQLNGTLPETLGSLPELSVLDVSSNSLTGIISEIHFSRLSKLKFLGLSSN 486
            + LT + L  NQLNGT+P + G L ELS LDVS N L G I E HFSRLSKL+FL L+SN
Sbjct: 420  QKLTSMELARNQLNGTVPGSFGQLSELSTLDVSLNHLRGYIYETHFSRLSKLRFLVLASN 479

Query: 487  SFILNVSSSWIPPFQVQSLNMRSCQLGPSFPSWLKTQQGVSFLDFSNASISGPIPNWFWD 546
            SFI NV+ +WIPPFQ Q++++ SC LGP FP+WL+TQ+ + FLD SNA+IS  IP WFW+
Sbjct: 480  SFIFNVTPNWIPPFQAQNVDIGSCHLGPPFPAWLRTQKKLRFLDISNATISDTIPKWFWE 539

Query: 547  ISSKLSLLNVSLNQLQGQLPNPLNIAPFADVDFRSNLLEGPIPLPIVEIELLDLSNNHFS 606
            I+S LSLLNVS NQLQGQL NPLN+AP ADVDF SNLLEGPIPLP VEIELLDLSNN FS
Sbjct: 540  IASNLSLLNVSFNQLQGQLQNPLNVAPDADVDFSSNLLEGPIPLPTVEIELLDLSNNQFS 599

Query: 607  GPIPQNISGSMPNLIFLSVSGNRLTGKIPGSIGEMQLLQVIDLSRNSISGSISSSIGNCT 666
            G I +N+S SMPNLIFLS+SGN+L G IP +IG+M LLQVIDLS N++ GSI  SIGNC+
Sbjct: 600  GLIHENLSESMPNLIFLSLSGNQLAGNIPATIGDMLLLQVIDLSNNNLLGSIPDSIGNCS 659

Query: 667  FLKVLDLSYSSLSGVIPASLGQLTRLQSLHLNNNKLTGNLPSSFQNLTSLETLDLGNNRF 726
            FLKVLDLS+++LSG IPASLGQL +LQSLHL+NNKL  N+P  F  +++LETLDL NN  
Sbjct: 660  FLKVLDLSFNNLSGTIPASLGQLNQLQSLHLSNNKLIENIPPFFHKISNLETLDLANNAL 719

Query: 727  SGNIPSLLGN--GFVGLRILSLRSNAFSGEIPSKLSNLSSLQVLDLAENNLTGSIPGSVG 784
            SG+IP  +G+  GF  LRILSLRSNA SGEIPS LSN+ SLQVLDLA NNLTG IP + G
Sbjct: 720  SGDIPRWIGSGGGFSKLRILSLRSNAISGEIPSTLSNIISLQVLDLALNNLTGRIPVTFG 779

Query: 785  DLKAMAHVQNIVKYLLFGRYRGIYYEENLVINTKGSSKDTPRLFHF---IDLSGNNLHGD 841
            D KAM+H Q I +YL++G+YRG+YY+E+LV+N KG  +   R+      IDLS NNL G+
Sbjct: 780  DFKAMSHEQYINQYLIYGKYRGLYYQESLVVNIKGGPQKYSRILSLVTSIDLSSNNLQGE 839

Query: 842  FPTQLTKLVGLVVLNLSRNHIGGQIPENISGLHQLASLDLSSNNLSGGIPSSLSSLSFLG 901
            FP ++TKL+GLV LNLS N I GQIP+++S + QL SLDLSSN LSG IPSS+S LSFL 
Sbjct: 840  FPVEITKLIGLVALNLSHNQIVGQIPQSVSNMRQLLSLDLSSNRLSGAIPSSMSLLSFLS 899

Query: 902  YINLSRNQLSGKIPFEGHMTTFDASSFAGNPGLCGDPLPVKCQDDESDKGGNVVEDDNED 961
             +NLSRN  SG IP+ G MTTF ASSF GNP LCG PL +KCQDD+ D+GG    DD++D
Sbjct: 900  ALNLSRNNFSGMIPYTGQMTTFAASSFIGNPSLCGAPLQLKCQDDDLDQGG-TSSDDDKD 958

Query: 962  EFIDKWFYFSLGLGFAAGIIVPMFIFSIKKPCSDAYFKFVDKIVDR 1007
             FID+WFY S+GLGFAAGI+VPMFI +IKK  SDAYF F+D++V R
Sbjct: 959  GFIDEWFYLSVGLGFAAGILVPMFILAIKKSWSDAYFGFLDELVHR 1004

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225466101|ref|XP_002265750.1| PREDICTED: LRR receptor-like serine/threonine-protein kinase FLS2-like [Vitis vinifera]

 Score = 1228 bits (3177), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 643/1028 (62%), Positives = 789/1028 (76%), Gaps = 24/1028 (2%)

Query: 1    MGRLSVLGLMLTMLCAITSDYASYGASRFSNCSENDLDALIDFKNGLEDPESRLASWKGS 60
            MGR SV  L++ +LC +T ++   G ++   C E D +ALID K GL+DPE RL+SW GS
Sbjct: 1    MGRFSVSSLVVAILCLVTREFVCKGETQLVICLEYDREALIDLKRGLKDPEDRLSSWSGS 60

Query: 61   NCCQWHGISCDDDTGAIVAINLGNPYHVVNSDSSGSL------------------LEYLD 102
            NCCQW GI+C++ TGA++ I+L NPY +  +DS+                     L +LD
Sbjct: 61   NCCQWRGIACENSTGAVIGIDLHNPYPLNFADSTSRYGYWNLSGDIRPSLLKLKSLRHLD 120

Query: 103  LSFNTFNDIPIPEFLGSLENLQYLNLSEAGFTGVVPSSLGNLHRLQYFDVSAELFALSAD 162
            LSFN F  IP+P+F GSL++LQYLNLS AGF+G +PS+LGNL  LQY DVS+   +L+AD
Sbjct: 121  LSFNKFQSIPVPKFFGSLKSLQYLNLSNAGFSGAIPSNLGNLSNLQYLDVSSG--SLTAD 178

Query: 163  SLDWLTGLVSLKHLAMNRVDLSLVGSEWLGILKNLPNLTELHLSVCGLTGSITSITPVNL 222
             L+W+ GL SLKHL MN+VDLS++GS WL IL  LP LT+LHLS CGL+GSI+S+  VN 
Sbjct: 179  DLEWMAGLGSLKHLEMNQVDLSMIGSNWLQILNKLPFLTDLHLSGCGLSGSISSLDYVNF 238

Query: 223  TSPAVLDLSLNHFNSLFPNWLVNISTLVYVDLSDCDLYGRIPIGFGELPNLQYLSLAGNN 282
            TS AV+ +  N+FNS FP WLVNIS+LV +D+S   LYGR+P+G  +LPNL+YL L+ NN
Sbjct: 239  TSLAVIAIGGNNFNSKFPVWLVNISSLVSIDISSSSLYGRVPLGLSQLPNLKYLDLSMNN 298

Query: 283  NLSGSCSQLFRGSWKKIQILNFASNKLHGKLPSSVANMTSLTNFDLFDKKVEGGIPSSIA 342
            +L+ SC QLFRG+WKKI+ L   SNKLHGKLP+S+ NMT LT+  LF+  VEGGIP SI 
Sbjct: 299  DLTASCFQLFRGNWKKIEFLELGSNKLHGKLPASIGNMTFLTHLGLFENNVEGGIPGSIG 358

Query: 343  RLCYLKEFDLSGNNLTGSLPEILQGTDLCVSSNSPLPSLISMRLGNNHLKGKLPEWLSQL 402
            +LC L   D+SGNNLTGSLPEIL+GT+ C  S  PLP L+ +RL NN L  KLPEWL QL
Sbjct: 359  KLCNLMYLDISGNNLTGSLPEILEGTENC-PSKRPLPGLMYLRLSNNRLASKLPEWLGQL 417

Query: 403  ENLVELTLSYNLLQGPIPASLGNLKNLTKLNLPGNQLNGTLPETLGSLPELSVLDVSSNS 462
            ENL+EL+L+YNLLQGPIPASLG L++L    L GN+L+GTLPE+LG L EL   DVS N 
Sbjct: 418  ENLLELSLNYNLLQGPIPASLGTLQHLEMFGLGGNELSGTLPESLGQLHELDTFDVSFNH 477

Query: 463  LTGIISEIHFSRLSKLKFLGLSSNSFILNVSSSWIPPFQVQSLNMRSCQLGPSFPSWLKT 522
            + G +SE HFS+LSKLK L L+SNSF LNVSS+W+PPFQV+ L+M SC LGP+FP WLK+
Sbjct: 478  MEGAVSEAHFSKLSKLKLLHLASNSFTLNVSSNWVPPFQVRYLDMGSCHLGPTFPVWLKS 537

Query: 523  QQGVSFLDFSNASISGPIPNWFWDISSKLSLLNVSLNQLQGQLPNPLNIAPFADVDFRSN 582
            Q+ V +LDFSNASISGP+PNWFWDISS LSLLNVSLNQLQGQLP+PL++A FAD+DF  N
Sbjct: 538  QKEVMYLDFSNASISGPLPNWFWDISSNLSLLNVSLNQLQGQLPDPLDVASFADIDFSFN 597

Query: 583  LLEGPIPLPIVEIELLDLSNNHFSGPIPQNISGSMPNLIFLSVSGNRLTGKIPGSIGEMQ 642
            L EGPIP+P VEIELLDL+NN+FSGPIP  I+ SMPNLIFLS+S N+LTG+IP SIG+M 
Sbjct: 598  LFEGPIPIPTVEIELLDLTNNYFSGPIPLKIAESMPNLIFLSLSANQLTGEIPASIGDML 657

Query: 643  LLQVIDLSRNSISGSISSSIGNCTFLKVLDLSYSSLSGVIPASLGQLTRLQSLHLNNNKL 702
             LQVIDLS N++ GSI S+IGNC++LKVLDL  ++L+G+IP +LGQL +LQSLHLNNN L
Sbjct: 658  FLQVIDLSNNNLEGSIPSTIGNCSYLKVLDLGNNNLTGLIPGALGQLEQLQSLHLNNNSL 717

Query: 703  TGNLPSSFQNLTSLETLDLGNNRFSGNIPSLLGNGFVGLRILSLRSNAFSGEIPSKLSNL 762
            +G +P +FQNL+SLETLDLGNNR SGNIP   G+GFVGLRIL+LRSNAFSG +PSKLSNL
Sbjct: 718  SGMIPPTFQNLSSLETLDLGNNRLSGNIPPWFGDGFVGLRILNLRSNAFSGGLPSKLSNL 777

Query: 763  SSLQVLDLAENNLTGSIPGSVGDLKAMAHVQNIVKYLLFGRYRGIYYEENLVINTKGSS- 821
            + LQVL LAENN TGSIP S G+ KAMA  Q + +YLL+G YR  YYEE+L++N KG S 
Sbjct: 778  NPLQVLVLAENNFTGSIPSSFGNFKAMAQQQKVNQYLLYGTYRSRYYEESLLVNMKGQSL 837

Query: 822  --KDTPRLFHFIDLSGNNLHGDFPTQLTKLVGLVVLNLSRNHIGGQIPENISGLHQLASL 879
                T  L   +DLSGN+L+G  P ++T L GL+VLNLSRN++ GQIPE IS L +L S 
Sbjct: 838  KYTKTLSLVTSMDLSGNSLYGTIPGEITNLFGLIVLNLSRNYMTGQIPEGISKLRELLSF 897

Query: 880  DLSSNNLSGGIPSSLSSLSFLGYINLSRNQLSGKIPFEGHMTTFDASSFAGNPGLCGDPL 939
            DLS+N LSG IP+S+SSL+FL  +NLS N  SG+IP  G   T   SSFAGNPGLCG PL
Sbjct: 898  DLSNNMLSGAIPTSMSSLTFLASLNLSNNNFSGEIPTGGQWDTLPESSFAGNPGLCGAPL 957

Query: 940  PVKCQDDESDKGGNVVEDDNEDEFIDKWFYFSLGLGFAAGIIVPMFIFSIKKPCSDAYFK 999
             VKCQD  SDKGG V +++N + FID WFY S+GLGFA GI+VP  IF+IKKP  D YF 
Sbjct: 958  LVKCQDANSDKGGPVEDEENGNGFIDGWFYLSMGLGFAVGILVPFLIFAIKKPWGDVYFL 1017

Query: 1000 FVDKIVDR 1007
            FVDKIVDR
Sbjct: 1018 FVDKIVDR 1025

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224055105|ref|XP_002298417.1| predicted protein [Populus trichocarpa] gi|222845675|gb|EEE83222.1| predicted protein [Populus trichocarpa]

 Score = 1132 bits (2928), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 600/994 (60%), Positives = 730/994 (73%), Gaps = 102/994 (10%)

Query: 32   CSENDLDALIDFKNGLEDPESRLASWKGSNCCQWHGISCDDDTGAIVAINLGNPYHVVNS 91
            CS +D  AL DFK+GLEDPE+RL+SWKG++CCQW GISCD+  GA+++++L NPY V ++
Sbjct: 1    CSLSDRKALTDFKHGLEDPENRLSSWKGTHCCQWRGISCDNTNGAVISVDLHNPYPVSSA 60

Query: 92   DSSGSL------------------LEYLDLSFNTFNDIPIPEFLGSLENLQYLNLSEAGF 133
            +SS                     L++LDLS NTFN+IPIP FLGS+ +L+YLNLSEAGF
Sbjct: 61   ESSTRYGYWNLSGEIRPSLLKLKSLQHLDLSLNTFNNIPIPTFLGSMRSLRYLNLSEAGF 120

Query: 134  TGVVPSSLGNLHRLQYFDVSAELFALSADSLDWLTGLVSLKHLAMNRVDLSLVGSEWLGI 193
            +G VP +LGNL  L++ DVS+    L+  SL+W+ GLVSLKHLA+N VDLS+VGS WLG+
Sbjct: 121  SGAVPLNLGNLSSLEFLDVSSPFSGLAVSSLEWVRGLVSLKHLAINGVDLSMVGSNWLGV 180

Query: 194  LKNLPNLTELHLSVCGLTGSITSITPVNLTSPAVLDLSLNHFNSLFPNWLVNISTLVYVD 253
            L  LP+L E+HLS CGL+GS+ S + VN TS +V+DLSLNHF+S+FP+WLVNIS+L YVD
Sbjct: 181  LNVLPHLAEIHLSGCGLSGSVLSHSSVNFTSLSVIDLSLNHFDSIFPDWLVNISSLSYVD 240

Query: 254  LSDCDLYGRIPIGFGELPNLQYLSLAGNNNLSGSCSQLFRGSWKKIQILNFASNKLHGKL 313
            LS+C                                                   L+G++
Sbjct: 241  LSNC--------------------------------------------------GLYGRI 250

Query: 314  PSSVANMTSLTNFDLFDKKVEGGIPSSIARLCYLKEFDLSGNNLTGSLPEILQGTDLCVS 373
            P +  NM+SLTNFDLF   VEGGIPSSI +LC LK FDLSGNNLTGSLPE+L+ T     
Sbjct: 251  PLAFRNMSSLTNFDLFSNSVEGGIPSSIGKLCNLKIFDLSGNNLTGSLPEVLERT----- 305

Query: 374  SNSPLPSLISMRLGNNHLKGKLPEWLSQLENLVELTLSYNLLQGPIPASLGNLKNLTKLN 433
                                      S LENL ELTL YN++QGPIPASLGNL NLT L 
Sbjct: 306  --------------------------SCLENLAELTLDYNMIQGPIPASLGNLHNLTILG 339

Query: 434  LPGNQLNGTLPETLGSLPELSVLDVSSNSLTGIISEIHFSRLSKLKFLGLSSNSFILNVS 493
            L GNQLNG+LP++ G L +L  LDVS N L+G I+E+HFSRL KLKFL LSSNSF  NVS
Sbjct: 340  LAGNQLNGSLPDSFGQLSQLWSLDVSFNHLSGFITELHFSRLHKLKFLHLSSNSFNFNVS 399

Query: 494  SSWIPPFQVQSLNMRSCQLGPSFPSWLKTQQGVSFLDFSNASISGPIPNWFWDISSKLSL 553
            S+WIPPFQ+++L++ SC LGPSFP+WL+TQ+ V FLDFSNASIS  IPNWFW+ISS LSL
Sbjct: 400  SNWIPPFQLRNLDLGSCHLGPSFPAWLRTQKEVGFLDFSNASISDTIPNWFWEISSNLSL 459

Query: 554  LNVSLNQLQGQLPNPLNIAPFADVDFRSNLLEGPIPLPIVEIELLDLSNNHFSGPIPQNI 613
            +NVS NQLQG LPNPL++APFADVDF SNLLEGPIPLP V IE LDLSNNHFSG IPQNI
Sbjct: 460  VNVSFNQLQGLLPNPLSVAPFADVDFSSNLLEGPIPLPTVGIESLDLSNNHFSGSIPQNI 519

Query: 614  SGSMPNLIFLSVSGNRLTGKIPGSIGEMQLLQVIDLSRNSISGSISSSIGNCTFLKVLDL 673
            + SMP+LIFLS+S N+LTG IP SIG+M +LQVIDLS NS+  +I SSIGN + LK LDL
Sbjct: 520  TKSMPDLIFLSLSNNQLTGAIPASIGDMLILQVIDLSNNSLERNIPSSIGNSSLLKALDL 579

Query: 674  SYSSLSGVIPASLGQLTRLQSLHLNNNKLTGNLPSSFQNLTSLETLDLGNNRFSGNIPSL 733
            S+++LSGVIP  LGQL +LQS+HL+NN LTG LP S QNL+SLETLDLGNNR SGNIP  
Sbjct: 580  SHNNLSGVIPELLGQLNQLQSIHLSNNNLTGKLPLSLQNLSSLETLDLGNNRLSGNIPLW 639

Query: 734  LGNGFVGLRILSLRSNAFSGEIPSKLSNLSSLQVLDLAENNLTGSIPGSVGDLKAMAHVQ 793
            +G GF  LRILSLRSNAFSGEIPS L+NLSSLQVLDLA+N LTG+IP ++GD KAM+  Q
Sbjct: 640  IGGGFPQLRILSLRSNAFSGEIPSNLANLSSLQVLDLADNKLTGAIPETLGDFKAMSKEQ 699

Query: 794  NIVKYLLFGRYRGIYYEENLVINTKGSSK---DTPRLFHFIDLSGNNLHGDFPTQLTKLV 850
             + +YLL+G+YRG+YY E  V+N KG  +    T  L   IDLS N+L+G+FP Q+TKLV
Sbjct: 700  YVNQYLLYGKYRGLYYGERFVMNIKGGPQKYTKTLSLVTSIDLSINSLNGEFPDQITKLV 759

Query: 851  GLVVLNLSRNHIGGQIPENISGLHQLASLDLSSNNLSGGIPSSLSSLSFLGYINLSRNQL 910
            GLV LNLS+N + G +P+NIS L QL+SLDLSSN LSG IPSSL +LSFL Y+NLS N L
Sbjct: 760  GLVTLNLSKNQVSGHVPDNISSLRQLSSLDLSSNRLSGAIPSSLPALSFLSYLNLSNNNL 819

Query: 911  SGKIPFEGHMTTFDASSFAGNPGLCGDPLPVKCQDDESDKGGNVVEDDNEDEFIDKWFYF 970
            SG IP+ G MTTF+ASSF+GNPGLCG PL ++CQ D+S KGG    +D++D FID WFY 
Sbjct: 820  SGMIPYRGQMTTFEASSFSGNPGLCGPPLVLQCQGDDSGKGGTSTIEDSDDGFIDSWFYL 879

Query: 971  SLGLGFAAGIIVPMFIFSIKKPCSDAYFKFVDKI 1004
            S+GLGFAAGI+VP+ +F+IKKP   +YF FVDKI
Sbjct: 880  SIGLGFAAGILVPILVFAIKKPWRLSYFGFVDKI 913

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449464040|ref|XP_004149737.1| PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At4g36180-like [Cucumis sativus] gi|449525646|ref|XP_004169827.1| PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At4g36180-like [Cucumis sativus]

 Score = 1110 bits (2871), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 594/1021 (58%), Positives = 747/1021 (73%), Gaps = 26/1021 (2%)

Query: 6    VLGLMLTMLCAITSDYASYGASRFSNCSENDLDALIDFKNGLEDPESRLASWKGSNCCQW 65
            VL L + +L  +T +  S    +   CS+ D +ALI F+NGL DPE+RL SWKG NCCQW
Sbjct: 6    VLPLAIRVLLLLTIELISNIYGKSIECSKPDREALIAFRNGLNDPENRLESWKGPNCCQW 65

Query: 66   HGISCDDDTGAIVAINLGNPYHV-------VNSDSSGSL-----LEYLDLSFNTFNDIPI 113
             G+ C++ TGA+ AI+L NPY +       ++ + S SL     L YLDLS+NTFNDIP+
Sbjct: 66   RGVGCENTTGAVTAIDLHNPYPLGEQGFWNLSGEISPSLTKLKSLRYLDLSYNTFNDIPV 125

Query: 114  PEFLGSLENLQYLNLSEAGFTGVVPSSLGNLHRLQYFDVSAELFALSADSLDWLTGLVSL 173
            P+F GSL+ LQYLNLS AGF+ ++P S GN+  LQY D+  E   L  D+L+W+ GLVSL
Sbjct: 126  PDFFGSLKKLQYLNLSNAGFSDMLPPSFGNMSSLQYLDM--ENLNLIVDNLEWVGGLVSL 183

Query: 174  KHLAMNRVDLSLVGSEWLGILKNLPNLTELHLSVCGLTGSITSITPV--NLTSPAVLDLS 231
            KHLAMN VDLS V S W  IL  L  +TELH+S CGL+GSI+S +P+  N T  +V+DLS
Sbjct: 184  KHLAMNSVDLSSVKSNWFKILSKLRYVTELHMSYCGLSGSISS-SPMTLNFTLLSVIDLS 242

Query: 232  LNHFNSLFPNWLVNISTLVYVDLSDCDLYGRIPIGFGELPNLQYLSLAGNNNLSGSCSQL 291
             NHF+S  PNWLVNIS+L  + +S+CDLYGRIP+G G+LP L+ L L+GN NLS SCSQL
Sbjct: 243  GNHFHSQIPNWLVNISSLTLITMSECDLYGRIPLGLGDLPILRLLDLSGNENLSASCSQL 302

Query: 292  FRGSWKKIQILNFASNKLHGKLPSSVANMTSLTNFDLFDKKVEGGIPSSIARLCYLKEFD 351
            FR  W ++++L  A NK+HGKLPSS+ NM+SL  FDLF+  VEGGIP SI  LC L  F 
Sbjct: 303  FRRGWSRVEVLVLAENKIHGKLPSSMGNMSSLAYFDLFENNVEGGIPRSIGSLCNLTFFR 362

Query: 352  LSGNNLTGSLPEILQGTDLCVSSNSPLPSLISMRLGNNHLKGKLPEWLSQLENLVELTLS 411
            LSGN L G+LPE L+GT+ C  +  PL +L  + L NN L G LP+WL QL+N++EL+L 
Sbjct: 363  LSGNYLNGTLPESLEGTENCKPA-PPLFNLEHLDLANNKLVGGLPKWLGQLQNIIELSLG 421

Query: 412  YNLLQGPIPASLGNLKNLTKLNLPGNQLNGTLPETLGSLPELSVLDVSSNSLTGIISEIH 471
            YN LQGPI     +LKNL+ L L  N LNGTLP+++G L ELSVLDVS+N LTG ISE H
Sbjct: 422  YNSLQGPI-LGFNSLKNLSSLRLQANALNGTLPQSIGQLSELSVLDVSNNQLTGTISETH 480

Query: 472  FSRLSKLKFLGLSSNSFILNVSSSWIPPFQVQSLNMRSCQLGPSFPSWLKTQQGVSFLDF 531
            FS LSKL+ L LSSNS  LNVS++W+PPFQV++L+M SC LGP FP WLK+Q  V +LDF
Sbjct: 481  FSNLSKLRILHLSSNSLRLNVSANWVPPFQVRNLDMGSCYLGPLFPLWLKSQHEVQYLDF 540

Query: 532  SNASISGPIPNWFWDISSKLSLLNVSLNQLQGQLPNPLNIAPFADVDFRSNLLEGPIPLP 591
            SNASISGPIP+WFW+IS  LSLLNVS NQL G+LPNPL +A FADVDF SNLLEGPIPLP
Sbjct: 541  SNASISGPIPSWFWEISPNLSLLNVSHNQLDGRLPNPLKVASFADVDFSSNLLEGPIPLP 600

Query: 592  IVEIELLDLSNNHFSGPIPQNISGSMPNLIFLSVSGNRLTGKIPGSIGEMQLLQVIDLSR 651
              EI  L+LSNN F GPIP+NI  +MPNL+FLS + N++ G+IP +IGEMQ+LQVI+LS 
Sbjct: 601  SFEIVSLELSNNRFFGPIPKNIGKAMPNLVFLSFADNQIIGEIPDTIGEMQILQVINLSG 660

Query: 652  NSISGSISSSIGNCTFLKVLDLSYSSLSGVIPASLGQLTRLQSLHLNNNKLTGNLPSSFQ 711
            N+++G I S+IGNC+ LK +D   + L G +P SLGQL +LQ+LHL+ N  TG LP SFQ
Sbjct: 661  NNLTGEIPSTIGNCSLLKAIDFENNYLVGPVPDSLGQLYQLQTLHLSENGFTGKLPPSFQ 720

Query: 712  NLTSLETLDLGNNRFSGNIPSLLGNGFVGLRILSLRSNAFSGEIPSKLSNLSSLQVLDLA 771
            N++SLETL+LG N  +G+IP  +G  F  LRILSLRSN FSG IP+ L NL SLQ+LDLA
Sbjct: 721  NMSSLETLNLGGNSLTGSIPPWIGTSFPNLRILSLRSNEFSGAIPALL-NLGSLQILDLA 779

Query: 772  ENNLTGSIPGSVGDLKAMAHVQNIVKYLLFGRYRGIYYEENLVINTKGS-SKDTPRLFHF 830
             N L GSI     +LKAM   Q   +YL +G+Y GIYY EN V+NTKG+  + T  LF  
Sbjct: 780  NNKLNGSISIGFINLKAMVQPQISNRYLFYGKYTGIYYRENYVLNTKGTLLRYTKTLFLV 839

Query: 831  --IDLSGNNLHGDFPTQLTKLVGLVVLNLSRNHIGGQIPENISGLHQLASLDLSSNNLSG 888
              IDLSGN L+GDFP  +T+L GL+ LNLSRNHI GQIP+NIS L QL+SLDLS+N  SG
Sbjct: 840  ISIDLSGNELYGDFPNDITELAGLIALNLSRNHITGQIPDNISNLIQLSSLDLSNNRFSG 899

Query: 889  GIPSSLSSLSFLGYINLSRNQLSGKIPFEGHMTTFDASSFAGNPGLCGDPLPVKCQD-DE 947
             IP SL+ L+ L Y+NLS N LSGKIP      TF+ASSF+GNPGLCG P  V CQ+ D 
Sbjct: 900  PIPPSLTKLTALSYLNLSNNNLSGKIPVGYQFETFNASSFSGNPGLCGAPTTVMCQNTDR 959

Query: 948  SDKGGNVVEDDNEDEFIDKWFYFSLGLGFAAGIIVPMFIFSIKKPCSDAYFKFVDKIVDR 1007
            S++G +  E++++++ ID WFY SLG+GFAAGI+VP  IF+ K+  S AYFK +D++V +
Sbjct: 960  SNEGRD--EEESKNQVIDNWFYLSLGVGFAAGILVPSCIFAAKRSWSTAYFKLLDEVVGK 1017

Query: 1008 L 1008
            +
Sbjct: 1018 V 1018

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359483180|ref|XP_002267646.2| PREDICTED: LRR receptor-like serine/threonine-protein kinase FLS2-like [Vitis vinifera]

 Score = 1062 bits (2746), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 580/1026 (56%), Positives = 718/1026 (69%), Gaps = 38/1026 (3%)

Query: 1    MGRLSVLGLMLTMLCAITSDYASYGASRFSNCSENDLDALIDFKNGLEDPESRLASWKGS 60
            M   S+LGL+   L  IT+++A  G     NC ++D +ALIDFK+GL+  + R +SW+GS
Sbjct: 1    MEGFSILGLVFATLAFITTEFACNGEIHSGNCLQSDREALIDFKSGLKFSKKRFSSWRGS 60

Query: 61   NCCQWHGISCDDDTGAIVAINLGNPYHVVNSDSSGSL---------LEYLDLSFNTFNDI 111
            +CCQW GI C+  TGA++ I+L NP    N + SG +         L YLDLSFN+F DI
Sbjct: 61   DCCQWQGIGCEKGTGAVIMIDLHNPEGHKNRNLSGDIRPSLKKLMSLRYLDLSFNSFKDI 120

Query: 112  PIPEFLGSLENLQYLNLSEAGFTGVVPSSLGNLHRLQYFDVSAELFALSADSLDWLTGLV 171
            PIP+F GS +NL+YLNLS AGF+GV+P +LGNL  LQY D+S+E   LS D+ +W+  LV
Sbjct: 121  PIPKFFGSFKNLKYLNLSYAGFSGVIPPNLGNLSNLQYLDLSSEYEQLSVDNFEWVANLV 180

Query: 172  SLKHLAMNRVDLSLVGSEWLGILKNLPNLTELHLSVCGLTGSITSITPVNLTSPAVLDLS 231
            SLKHL M+ VDLS+VGS+W+  L  LP L ELHL  CGL    + +  +N TS A+L++ 
Sbjct: 181  SLKHLQMSEVDLSMVGSQWVEALNKLPFLIELHLPSCGLFDLGSFVRSINFTSLAILNIR 240

Query: 232  LNHFNSLFPNWLVNISTLVYVDLSDCDLYGRIPIGFGELPNLQYLSLAGNNNLSGSCSQL 291
             N+FNS FP WLVNIS+L  +D+S  +L GRIP+G GELPNLQYL L+ N NLS +C  L
Sbjct: 241  GNNFNSTFPGWLVNISSLKSIDISSSNLSGRIPLGIGELPNLQYLDLSWNRNLSCNCLHL 300

Query: 292  FRGSWKKIQILNFASNKLHGKLPSSVANMTSLTNFDLFDKKVEGGIPSSIARLCYLKEFD 351
             RGSWKKI+IL+ ASN LHGKL S                     IP+S   LC L+  +
Sbjct: 301  LRGSWKKIEILDLASNLLHGKLHSCT-------------------IPNSFGNLCKLRYLN 341

Query: 352  LSGNNLTGSLPEILQGTDLCVSSNSPLPSLISMRLGNNHLKGKLPEWLSQLENLVELTLS 411
            + GNNLTGSLPE L+    C SS   LP+L ++ L  NHL G LPEWL +LENL EL L 
Sbjct: 342  VEGNNLTGSLPEFLEEIKNC-SSKRLLPNLKNLILPQNHLIGNLPEWLGKLENLEELILD 400

Query: 412  YNLLQGPIPASLGNLKNLTKLNLPGNQLNGTLPETLGSLPELSVLDVSSNSLTGIISEIH 471
             N LQG IPASLGNL +L ++ L GN LNG+LP++ G L EL  LDVS N L G +SE H
Sbjct: 401  DNKLQGLIPASLGNLHHLKEMRLDGNNLNGSLPDSFGQLSELVTLDVSFNGLMGTLSEKH 460

Query: 472  FSRLSKLKFLGLSSNSFILNVSSSWIPPFQVQSLNMRSCQLGPSFPSWLKTQQGVSFLDF 531
            FS+LSKLK L L SNSFIL+VSS+W PPFQ+ +L MRSC LG SFP WL++Q+ V +LDF
Sbjct: 461  FSKLSKLKKLYLDSNSFILSVSSNWTPPFQIFALGMRSCNLGNSFPVWLQSQKEVEYLDF 520

Query: 532  SNASISGPIPNWFWDISSKLSLLNVSLNQLQGQLPNPLNIAPFADVDFRSNLLEGPIPLP 591
            SNASISG +PNWFW+IS  + +LN+SLNQ+QGQLP+ LN+A F  +D  SN  EGPIPLP
Sbjct: 521  SNASISGSLPNWFWNISFNMWVLNISLNQIQGQLPSLLNVAEFGSIDLSSNQFEGPIPLP 580

Query: 592  ---IVEIELLDLSNNHFSGPIPQNISGSMPNLIFLSVSGNRLTGKIPGSIGEMQLLQVID 648
               +  +++ DLSNN FSG IP NI  S+  ++FLS+SGN++TG IP SIG M  +  ID
Sbjct: 581  NPVVASVDVFDLSNNKFSGSIPLNIGDSIQAILFLSLSGNQITGTIPASIGFMWRVNAID 640

Query: 649  LSRNSISGSISSSIGNCTFLKVLDLSYSSLSGVIPASLGQLTRLQSLHLNNNKLTGNLPS 708
            LSRN ++GSI S+IGNC  L VLDL Y++LSG+IP SLGQL  LQSLHL++N L+G LP+
Sbjct: 641  LSRNRLAGSIPSTIGNCLNLIVLDLGYNNLSGMIPKSLGQLEWLQSLHLDHNNLSGALPA 700

Query: 709  SFQNLTSLETLDLGNNRFSGNIPSLLGNGFVGLRILSLRSNAFSGEIPSKLSNLSSLQVL 768
            SFQNL+SLETLDL  N+ SGNIP  +G  F+ LRIL LRSN FSG +PSK SNLSSL VL
Sbjct: 701  SFQNLSSLETLDLSYNKLSGNIPRWIGTAFMNLRILKLRSNDFSGRLPSKFSNLSSLHVL 760

Query: 769  DLAENNLTGSIPGSVGDLKAMAHVQNIVKYLLFGR---YRGIYYEENLVINTKG---SSK 822
            DLAENNLTGSIP ++ DLKAMA   N+ KYL +       G YYEE+  ++TKG      
Sbjct: 761  DLAENNLTGSIPSTLSDLKAMAQEGNVNKYLFYATSPDTAGEYYEESSDVSTKGQVLKYT 820

Query: 823  DTPRLFHFIDLSGNNLHGDFPTQLTKLVGLVVLNLSRNHIGGQIPENISGLHQLASLDLS 882
             T  L   IDLS NNL G+FP ++T L GLV+LNLSRNHI G IPENIS LHQL+SLDLS
Sbjct: 821  KTLSLVVSIDLSSNNLSGEFPKEITALFGLVMLNLSRNHITGHIPENISRLHQLSSLDLS 880

Query: 883  SNNLSGGIPSSLSSLSFLGYINLSRNQLSGKIPFEGHMTTFDASSFAGNPGLCGDPLPVK 942
            SN   G IP S+SSLS LGY+NLS N  SG IPF G MTTF+AS F GNPGLCG PL  K
Sbjct: 881  SNMFFGVIPRSMSSLSALGYLNLSYNNFSGVIPFIGKMTTFNASVFDGNPGLCGAPLDTK 940

Query: 943  CQDDESDKGGNVVEDDNEDEFIDKWFYFSLGLGFAAGIIVPMFIFSIKKPCSDAYFKFVD 1002
            CQ +  D G   V D+    ++D+WFY S+GLGFA G++VP FI +  K C + YF FV+
Sbjct: 941  CQGEGIDGGQKNVVDEKGHGYLDEWFYLSVGLGFAVGVLVPFFICTFSKSCYEVYFGFVN 1000

Query: 1003 KIVDRL 1008
            KIV  L
Sbjct: 1001 KIVGNL 1006

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359483304|ref|XP_003632938.1| PREDICTED: LRR receptor-like serine/threonine-protein kinase GSO1-like [Vitis vinifera]

 Score = 1051 bits (2719), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 583/1041 (56%), Positives = 739/1041 (70%), Gaps = 52/1041 (4%)

Query: 1    MGRLSVLGLMLTMLCAITSDYASYGASRFSNCSENDLDALIDFKNGLEDPESRLASWKGS 60
            M R+S+LG +L +L  IT++ A  G +   N  +++ +ALIDFK+GL+DP +RL+SWKGS
Sbjct: 1    MERISILGFILAILYFITTELACSGHTHIGNNVQSEQNALIDFKSGLKDPNNRLSSWKGS 60

Query: 61   NCCQWHGISCDDDTGAIVAINLGNPY---HVVNSDSSGSL-------------LEYLDLS 104
            N C W GISC + T  +++I+L NPY   +V    SS +L             L+YLDLS
Sbjct: 61   NYCYWQGISCKNGTRFVISIDLHNPYPRENVYEDWSSMNLSGEICPSLIKLKSLKYLDLS 120

Query: 105  FNTFNDIPIPEFLGSLENLQYLNLSEAGFTGVVPSSLGNLHRLQYFDVSAEL-----FAL 159
            FN+F  +PIP+F GSL+NL YLNLS AGF+G +PS+LGNL  LQY D+S++      F  
Sbjct: 121  FNSFKAMPIPQFFGSLKNLIYLNLSSAGFSGTIPSNLGNLSHLQYLDLSSKYPKYVDFEY 180

Query: 160  SAD----SLDWLTGLVSLKHLAMNRVDLSLVGSEWLGILKNLPNLTELHLSVCGLTGSIT 215
            S D    +++W+ GLVSLK+L MN V+LSLVGS+W+ +L  LP L+ELHL  C L GS  
Sbjct: 181  SNDLFVQNIEWMIGLVSLKYLGMNYVNLSLVGSQWVEVLNELPILSELHLDGCSLFGSYP 240

Query: 216  SITPVNLTSPAVLDLSLNHFNSLFPNWLVNISTLVYVDLSDCDLYGRIPIGFGELPNLQY 275
            S + VN TS AV+ +S NHFNS FP+WL+N+  LV +++S   L+GRIP+G GELPNLQY
Sbjct: 241  SPSFVNFTSLAVIAISSNHFNSKFPDWLLNVRNLVSINISLSQLHGRIPLGLGELPNLQY 300

Query: 276  LSLAGNNNLSGSCSQLFRGSWKKIQILNFASNKLHGKLPSSVANMTSLTNFDLFDKKVEG 335
            L L+ N NL GS SQL R SWKKI++L+   NKL G+LPSS  N++SL   DL   ++ G
Sbjct: 301  LDLSWNLNLKGSISQLLRKSWKKIEVLDLNDNKLSGELPSSFQNLSSLELLDLSSNQLSG 360

Query: 336  GIPSSIARLCYLKEFDLSGNNLTGSLPEILQGTDLCVSSNSPLPSLISMRLGNNHLKGKL 395
             IP SI   C LK  DL  NNLTGSLP+ L+G + C SS S LP L ++ L NN L GKL
Sbjct: 361  SIPDSIGSFCNLKYLDLGHNNLTGSLPQFLEGMENC-SSKSYLPYLTNLILPNNQLVGKL 419

Query: 396  PEWLSQLENLVELTLSYNLLQGPIPASLGNLKNLTKLNLPGNQLNGTLPETLGSLPELSV 455
             EWL  LENLVEL LSYN  +GPIPA+LG+L++LT + L  NQLNGTLP++ G L EL  
Sbjct: 420  AEWLGLLENLVELDLSYNKFEGPIPATLGSLQHLTDMWLGTNQLNGTLPDSFGQLSELLY 479

Query: 456  LDVSSNSLTGIISEIHFSRLSKLKFLGLSSNS-FILNVSSSWIPPFQVQSLNMRSCQLGP 514
            L+VS NSLTGI+S  HFS+LSKLK L + SNS F LNV+SSW+PPFQ+  L+  SC LGP
Sbjct: 480  LEVSFNSLTGILSAEHFSKLSKLKHLYMQSNSGFNLNVNSSWVPPFQIWDLDFGSCSLGP 539

Query: 515  SFPSWLKTQQGVSFLDFSNASISGPIPNWFWDISSKLSLLNVSLNQLQGQLPNPLNIAPF 574
            SFP+WL++Q+ +  LDFSN SIS PIPN                  L GQLPNPLN++  
Sbjct: 540  SFPAWLQSQKELVSLDFSNTSISSPIPN-----------------CLHGQLPNPLNVSQD 582

Query: 575  ADVDFRSNLLEGPIPLPIVEIELLDLSNNHFSGPIPQNISGSMPNLIFLSVSGNRLTGKI 634
            A +DF SNL EGPIPLP   IE LD SNN+FSGPIP +I  S+P+L  LS+SGN++TG I
Sbjct: 583  ALIDFSSNLFEGPIPLPTKTIESLDFSNNNFSGPIPPSIGESIPSLRVLSLSGNQITGVI 642

Query: 635  PGSIGEMQLLQVIDLSRNSISGSISSSIGNCTFLKVLDLSYSSLSGVIPASLGQLTRLQS 694
            P SIG+++ L +I LS NS++GSI  +I NC+ L+VLDL  + LSG IP  +GQL  LQS
Sbjct: 643  PASIGDIRGLDIIHLSWNSLTGSILLTIINCSSLRVLDLGNNDLSGRIPEQMGQLKWLQS 702

Query: 695  LHLNNNKLTGNLPSSFQNLTSLETLDLGNNRFSGNIPSLLGNGFVGLRILSLRSNAFSGE 754
            LH+ NN L+G LP SFQNL+SLETLDL  NR SGNIP+ +G  F+GL+IL+LRS  FSG 
Sbjct: 703  LHMENNNLSGGLPLSFQNLSSLETLDLSYNRLSGNIPTWIGAAFMGLKILNLRSTGFSGS 762

Query: 755  IPSKLSNLSSLQVLDLAENNLTGSIPGSVGDLKAMAHVQNIVKYLLFG-----RYRGIYY 809
            +PS+LS L SL VLDL++NNLTGSIP ++G LKAMA  +NI +++L+G     RY G YY
Sbjct: 763  LPSELSYLRSLHVLDLSQNNLTGSIPPTLGGLKAMAQEKNINQFVLYGSFQGRRYGGQYY 822

Query: 810  EENLVINTKGSSKDTPR---LFHFIDLSGNNLHGDFPTQLTKLVGLVVLNLSRNHIGGQI 866
            EE+LV+N KG   +  R   L   IDLS NNL G+FP  +T+L GLV LNLSRNHI GQI
Sbjct: 823  EESLVVNMKGQRLEYTRTLSLVTSIDLSDNNLSGEFPEAITELFGLVALNLSRNHITGQI 882

Query: 867  PENISGLHQLASLDLSSNNLSGGIPSSLSSLSFLGYINLSRNQLSGKIPFEGHMTTFDAS 926
            PE+IS L +L SLDLSSN L G IPSS++SLSFLG +NLS N  SGKIPF G MTTFD  
Sbjct: 883  PESISRLKELLSLDLSSNKLFGTIPSSMASLSFLGSLNLSNNNFSGKIPFTGQMTTFDEL 942

Query: 927  SFAGNPGLCGDPLPVKCQDDESDKGGNVVEDDNEDEFIDKWFYFSLGLGFAAGIIVPMFI 986
            +F GNPGLCG PL  KCQD++SDK  +   D+N++ FID+WFY S+GLGFAAGI+VP F+
Sbjct: 943  AFDGNPGLCGAPLVEKCQDEDSDKEHSTGTDENDNHFIDRWFYLSVGLGFAAGILVPYFV 1002

Query: 987  FSIKKPCSDAYFKFVDKIVDR 1007
               +K   DAY+  VD+I+D+
Sbjct: 1003 LVSRKSWCDAYWNIVDEIIDK 1023

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359483186|ref|XP_002269242.2| PREDICTED: LRR receptor-like serine/threonine-protein kinase GSO1-like [Vitis vinifera]

 Score = 1051 bits (2719), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 583/1024 (56%), Positives = 731/1024 (71%), Gaps = 21/1024 (2%)

Query: 1    MGRLSVLGLMLTMLCAITSDYASYGASRFSNCSENDLDALIDFKNGLEDPESRLASWKGS 60
            M R+ VLG +L  LC IT+++A  G     NC E+D +AL+DFKNGL+  ++R  SWKGS
Sbjct: 48   MERVLVLGFILATLCLITTEFACNGDVHSGNCLESDREALVDFKNGLKCSKNRFLSWKGS 107

Query: 61   NCCQWHGISCDDDTGAIVAINLGNPYHVVNSDSSGS----------------LLEYLDLS 104
            NCC W GI+C + TG +++I+L N Y   +   + S                 L YLDLS
Sbjct: 108  NCCHWEGINCKNSTGVVISIDLHNSYDSFSDYQNWSSMKLSGEIRPSLKKLKFLRYLDLS 167

Query: 105  FNTFNDIPIPEFLGSLENLQYLNLSEAGFTGVVPSSLGNLHRLQYFDVSAELFALSADSL 164
             N+FNDI IP+F GSL+NLQYLNLS +GF+G +P +LGNL  LQ  D+S+E   L +D+L
Sbjct: 168  GNSFNDISIPQFFGSLKNLQYLNLSNSGFSGAIPPNLGNLSNLQSLDLSSEFSYLWSDNL 227

Query: 165  DWLTGLVSLKHLAMNRVDLSLVGSEWLGILKNLPNLTELHLSVCGLTGSITSITPVNLTS 224
            DW+ G VSLK+L MN  +LS+VG  W G+L  LP LTELHL  C L+GSI+S+   N +S
Sbjct: 228  DWMAGFVSLKNLNMNHANLSMVGPHWAGVLTKLPILTELHLLGCNLSGSISSLGSSNFSS 287

Query: 225  PAVLDLSLNHFNSLFPNWLVNISTLVYVDLSDCDLYGRIPIGFGELPNLQYLSLAGNNNL 284
             A+L +S N FNS FP WLVN+S+LV +D+S+C+L+GR+P+   ELPNLQYL L+GN NL
Sbjct: 288  LAILSISQNAFNSKFPEWLVNVSSLVSIDISNCELWGRVPLDLSELPNLQYLDLSGNKNL 347

Query: 285  SGSCSQLFRGSWKKIQILNFASNKLHGKLPSSVANMTSLTNFDLFDKKVEGGIPSSIARL 344
             GSC+QL +GSW++I++L  ASN LHGK P     +   ++F      VEG IPSS+  L
Sbjct: 348  EGSCAQLLKGSWRRIEVLILASNNLHGKFPLLPTKIYINSSFWYQMNNVEGTIPSSVGIL 407

Query: 345  CYLKEFDLSGNNLTGSLPEILQGTDLCVSSNSPLPSLISMRLGNNHLKGKLPEWLSQLEN 404
            C LK  +L  NNLTG LP  L+  + C SS SPLP+L  + L +N L GKLPEWL +LE 
Sbjct: 408  CNLKYLNLGSNNLTGGLPTFLEVPENC-SSESPLPNLTYLSLSSNQLTGKLPEWLGELEE 466

Query: 405  LVELTLSYNLLQGPIPASLGNLKNLTKLNLPGNQLNGTLPETLGSLPELSVLDVSSNSLT 464
            LVEL +  N LQG IPASLG L++LT++ L  N+L GTLP++ G L EL  LDVS N+L 
Sbjct: 467  LVELRMDDNNLQGRIPASLGTLQHLTEMWLGTNRLKGTLPDSFGQLSELVYLDVSFNNLI 526

Query: 465  GIISEIHFSRLSKLKFLGLSSNSFILNVSSSWIPPFQVQSLNMRSCQLGPSFPSWLKTQQ 524
            GI+SE  FS+L+KLK+L LSSNSF LNVSS W+PPFQ+  L M SC LGPSFP WLK+Q+
Sbjct: 527  GILSEEKFSKLTKLKYLLLSSNSFTLNVSSHWVPPFQIHFLEMGSCHLGPSFPPWLKSQK 586

Query: 525  GVSFLDFSNASISGPIPNWFWDISSKLSLLNVSLNQLQGQLPNPLNIAPFADVDFRSNLL 584
             V +L  SNASIS  IPNWFW+ISS +  +N+SLN LQGQLPNPLN+ PFA +DF SNL 
Sbjct: 587  EVEYLVLSNASISSSIPNWFWNISSNIGWVNLSLNHLQGQLPNPLNLGPFASIDFSSNLF 646

Query: 585  EGPIPLPIVEIELLDLSNNHFSGPIPQNISGSMPNLIFLSVSGNRLTGKIPGSIGEMQLL 644
            +GPIPLP     +LDLS+N FSGPIPQ I   MP L FLS+S N + G IP S+G M  +
Sbjct: 647  QGPIPLPNRGAYVLDLSDNKFSGPIPQRIGEFMPELWFLSLSDNEIKGTIPASVGHMWNV 706

Query: 645  QVIDLSRNSISGSISSSIGNCTFLKVLDLSYSSLSGVIPASLGQLTRLQSLHLNNNKLTG 704
            +VIDLSRN + GSI S+I NC+ L++LDL  + LSG+IP SLG+L +L+SLHLN NK +G
Sbjct: 707  EVIDLSRNGLVGSIPSTINNCSNLRILDLGNNGLSGMIPVSLGKLKQLRSLHLNKNKFSG 766

Query: 705  NLPSSFQNLTSLETLDLGNNRFSGNIPSLLGNGFVGLRILSLRSNAFSGEIPSKLSNLSS 764
             LP SFQ+L++LETLDL  N+ SG+IPS +G  F  LRIL+LRSNAFSGE+PS +SNL S
Sbjct: 767  GLPPSFQHLSNLETLDLSYNKLSGSIPSWMGAAFSHLRILNLRSNAFSGELPSDISNLRS 826

Query: 765  LQVLDLAENNLTGSIPGSVGDLKAMAHVQNIVKYLLFGRYRGIYYEENLVINTKGSSKDT 824
            L VLDLAEN+LTG+IP  +GDLKAMA  QN  +YLL+G     YYEE+L +N KG   + 
Sbjct: 827  LHVLDLAENHLTGTIPAILGDLKAMAEEQNKNQYLLYGMLVH-YYEESLFVNAKGQVLEY 885

Query: 825  PRLFHF---IDLSGNNLHGDFPTQLTKLVGLVVLNLSRNHIGGQIPENISGLHQLASLDL 881
             +       IDLS NNL GDFP ++T L GLVVLNLS+NHI GQIP +I  LHQL S DL
Sbjct: 886  TKTLSLVVSIDLSHNNLSGDFPKEITNLFGLVVLNLSKNHISGQIPRSIWRLHQLLSFDL 945

Query: 882  SSNNLSGGIPSSLSSLSFLGYINLSRNQLSGKIPFEGHMTTFDASSFAGNPGLCGDPLPV 941
            SSN LSG IP S+SSL+FL Y+NLS N  SG+IPF G MTTF A++FAGNP LCG PL  
Sbjct: 946  SSNKLSGTIPLSMSSLTFLSYLNLSNNNFSGQIPFMGQMTTFTATAFAGNPNLCGAPLVT 1005

Query: 942  KCQDDESDKGGNVVEDDNEDEFIDKWFYFSLGLGFAAGIIVPMFIFSIKKPCSDAYFKFV 1001
            KCQD+ SDKG + VED+ ++ FID+WFY S+ LGFA G  VP FI  ++K   DAYF FV
Sbjct: 1006 KCQDEGSDKGQSDVEDETDNNFIDQWFYMSVALGFALGSSVPFFILLMRKSWWDAYFDFV 1065

Query: 1002 DKIV 1005
            DKIV
Sbjct: 1066 DKIV 1069

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359483302|ref|XP_002263565.2| PREDICTED: LRR receptor-like serine/threonine-protein kinase GSO1-like [Vitis vinifera]

 Score = 1035 bits (2676), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 564/1034 (54%), Positives = 724/1034 (70%), Gaps = 51/1034 (4%)

Query: 1    MGRLSVLGLMLTMLCAITSDYASYGASRFSNCSENDLDALIDFKNGLEDPESRLASWKGS 60
            M ++S+LG +L +L  IT++ A  G +R  N  +++  ALIDFK+GL+DP +RL+SWKGS
Sbjct: 1    MEKISILGFILAILYLITTELACNGHTRIDNNVQSEQKALIDFKSGLKDPNNRLSSWKGS 60

Query: 61   NCCQWHGISCDDDTGAIVAINLGNPY---HVVNSDSSGSL-------------LEYLDLS 104
            N C W GISC++ TG +++I+L NPY   +V  + SS +L             L+YLDLS
Sbjct: 61   NYCSWQGISCENGTGFVISIDLHNPYPRENVYENWSSMNLSGEISPSLIKLKSLKYLDLS 120

Query: 105  FNTFNDIPIPEFLGSLENLQYLNLSEAGFTGVVPSSLGNLHRLQYFDVSAELFALSADSL 164
            FN+F  +P+P+F GSLENL YLNLS AGF+G +PS+L NL  LQY D+S+    L  +++
Sbjct: 121  FNSFKAMPVPQFFGSLENLIYLNLSGAGFSGSIPSNLRNLSSLQYLDLSSYFNNLFVENI 180

Query: 165  DWLTGLVSLKHLAMNRVDLSLVGSEWLGILKNLPNLTELHLSVCGLTGSITSITPVNLTS 224
            +W+TGLVSLK+L MN V+LSLVGS W+ +   LP+LTELHL  CGL GS  S + +N +S
Sbjct: 181  EWMTGLVSLKYLGMNYVNLSLVGSRWVEVANKLPSLTELHLGGCGLFGSFPSPSFINFSS 240

Query: 225  PAVLDLSLNHFNSLFPNWLVNISTLVYVDLSDCDLYGRIPIGFGELPNLQYLSLAG---- 280
             AV+ ++ N FNS FP+WL+N+S LV +D+SD  LYGRIP+G GELPNLQYL L+     
Sbjct: 241  LAVIAINSNDFNSKFPDWLLNVSNLVSIDISDNKLYGRIPLGLGELPNLQYLDLSSSIYL 300

Query: 281  --NNNLSGSCSQLFRGSWKKIQILNFASNKLHGKLPSSVANMTSLTNFDLFDKKVEGGIP 338
              + +L GS SQL R SWKKI++L    N+LHG                         IP
Sbjct: 301  FSDFHLRGSISQLLRKSWKKIEVLKLDGNELHGS------------------------IP 336

Query: 339  SSIARLCYLKEFDLSGNNLTGSLPEILQGTDLCVSSNSPLPSLISMRLGNNHLKGKLPEW 398
            SSI   C LK  DLS N L GSLPEI++G + C SS SPLP+L  + L NN L GKLP W
Sbjct: 337  SSIGNFCNLKYLDLSFNLLNGSLPEIIKGLETC-SSKSPLPNLTKLSLYNNQLMGKLPNW 395

Query: 399  LSQLENLVELTLSYNLLQGPIPASLGNLKNLTKLNLPGNQLNGTLPETLGSLPELSVLDV 458
            L +L+NL  L LS N  +GPIPASLG L++L  L+L  N+LNG+LP+++G L +L  LDV
Sbjct: 396  LGELKNLKALDLSNNKFEGPIPASLGTLQHLEFLSLLKNELNGSLPDSIGQLSQLEQLDV 455

Query: 459  SSNSLTGIISEIHFSRLSKLKFLGLSSNSFILNVSSSWIPPFQVQSLNMRSCQLGPSFPS 518
            SSN L+G +SE HF +LSKL+ L + SNSF LNVS +W+P FQV  L+M SC LGPSF +
Sbjct: 456  SSNHLSGSLSEQHFLKLSKLENLYMGSNSFHLNVSPNWVPLFQVDELDMCSCHLGPSFSA 515

Query: 519  WLKTQQGVSFLDFSNASISGPIPNWFWDISSKLSLLNVSLNQLQGQLPNPLNIAPFADVD 578
            WL++Q+ ++FLDFSN SIS PIPNWF +IS  L  LN+S NQLQGQLPN LN    +++D
Sbjct: 516  WLQSQKNLNFLDFSNGSISSPIPNWFGNISLNLQRLNLSHNQLQGQLPNSLNFYGLSEID 575

Query: 579  FRSNLLEGPIPLPIVEIELLDLSNNHFSGPIPQNISGSMPNLIFLSVSGNRLTGKIPGSI 638
            F SNL EGPIP  I  +++LDLS N F G IP NI   +P+L FLS+SGNR+TG IP SI
Sbjct: 576  FSSNLFEGPIPFSIKGVDILDLSYNKFYGAIPSNIGEFLPSLQFLSLSGNRITGTIPDSI 635

Query: 639  GEMQLLQVIDLSRNSISGSISSSIGNCTFLKVLDLSYSSLSGVIPASLGQLTRLQSLHLN 698
            G +  L+VID SRN+++GSI S+I NC+ L VLDL  ++L G+IP SLGQL  LQSLHLN
Sbjct: 636  GRITNLEVIDFSRNNLTGSIPSTINNCSNLFVLDLGNNNLFGIIPKSLGQLQSLQSLHLN 695

Query: 699  NNKLTGNLPSSFQNLTSLETLDLGNNRFSGNIPSLLGNGFVGLRILSLRSNAFSGEIPSK 758
            +N+L+G LPSSFQNLT LE LDL  N+  G +P+ +G  FV L IL+LRSN F G +PS+
Sbjct: 696  HNELSGELPSSFQNLTGLEVLDLSYNKLLGEVPAWIGVAFVNLVILNLRSNVFCGRLPSQ 755

Query: 759  LSNLSSLQVLDLAENNLTGSIPGSVGDLKAMAHVQNIVK-YLLFGRYRGIYYEENLVINT 817
            LSNLSSL VLD+A+NNL G IP ++ +LKAMA   N++  Y  F +    +Y+E LV+ T
Sbjct: 756  LSNLSSLHVLDIAQNNLMGKIPITLVELKAMAQEHNMINIYPSFQKEGLSWYKELLVVIT 815

Query: 818  KGSSKDTPRLFHF---IDLSGNNLHGDFPTQLTKLVGLVVLNLSRNHIGGQIPENISGLH 874
            KG S +  R       IDLS NNL G+FP ++TKL GLVVLNLSRNHI GQIPE+IS L 
Sbjct: 816  KGQSLEYTRTLSLVVGIDLSNNNLSGEFPQEITKLFGLVVLNLSRNHITGQIPESISMLR 875

Query: 875  QLASLDLSSNNLSGGIPSSLSSLSFLGYINLSRNQLSGKIPFEGHMTTFDASSFAGNPGL 934
            QL SLDLSSN LS  IPSS++SLSFL Y+NLS N  SGKIPF G MTTF   +F GNP L
Sbjct: 876  QLLSLDLSSNKLSDSIPSSMASLSFLSYLNLSNNNFSGKIPFTGQMTTFTELAFVGNPDL 935

Query: 935  CGDPLPVKCQDDESDKGGNVVEDDNEDEFIDKWFYFSLGLGFAAGIIVPMFIFSIKKPCS 994
            CG PL  KCQD++ +K  +VV D N+  ++D+WFY S+GLGFA GI+VP F+ + +K   
Sbjct: 936  CGAPLATKCQDEDPNKRQSVVSDKNDGGYVDQWFYLSVGLGFAMGILVPFFVLATRKSWC 995

Query: 995  DAYFKFVDKIVDRL 1008
            +AYF FVD+IV  L
Sbjct: 996  EAYFDFVDEIVRWL 1009

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359483174|ref|XP_002262904.2| PREDICTED: LRR receptor-like serine/threonine-protein kinase GSO1 [Vitis vinifera]

 Score = 1015 bits (2625), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 560/1037 (54%), Positives = 718/1037 (69%), Gaps = 54/1037 (5%)

Query: 1    MGRLSVLGLMLTMLCAITSDYASYGASRFSNCSENDLDALIDFKNGLEDPESRLASWKGS 60
            M R+S+LG ++ +L  IT++ A  G +  SN  +++ + LIDFK+GL+DP +RL+SWKGS
Sbjct: 1    MERISILGFIVAILYFITTELACNGYTHISNNIQSEQETLIDFKSGLKDPNNRLSSWKGS 60

Query: 61   NCCQWHGISCDDDTGAIVAINLGNPY---HVVNSDSSGSL-------------LEYLDLS 104
            N C W GI+C+ DTG +++I+L NPY   +V  + SS +L             L+YLDLS
Sbjct: 61   NYCYWQGITCEKDTGIVISIDLHNPYPRENVYKNWSSMNLSGEIRPSLTKLKYLKYLDLS 120

Query: 105  FNTFNDIPIPEFLGSLENLQYLNLSEAGFTGVVPSSLGNLHRLQYFDVSAE--------- 155
            FN+F  +PIP+F GSL+NL YLNLS A F+G +PS+ GNL  LQY D+S+E         
Sbjct: 121  FNSFKGMPIPQFFGSLKNLLYLNLSGAEFSGTIPSNFGNLSNLQYLDLSSEDPIYYDFKY 180

Query: 156  LFALSADSLDWLTGLVSLKHLAMNRVDLSLVGSEWLGILKNLPNLTELHLSVCGLTGSIT 215
               LS  +++W+  LVSLK+L M+ V+LS VGSEW+ ++  LP LTELHL  C L+GSI 
Sbjct: 181  FNDLSIGNIEWMASLVSLKYLGMDYVNLSSVGSEWVEMINKLPILTELHLDGCSLSGSIP 240

Query: 216  SITPVNLTSPAVLDLSLNHFNSLFPNWLVNISTLVYVDLSDCDLYGRIPIGFGELPNLQY 275
            S + VN TS  V+ ++ N F S+FP W +N+S+L  +D+S   L+GRIP+G  ELPNLQY
Sbjct: 241  SPSFVNFTSLLVISINSNQFISMFPEWFLNVSSLGSIDISHNQLHGRIPLGLSELPNLQY 300

Query: 276  LSLAGNNNLSGSCSQLFRGSWKKIQILNFASNKLHGKLPSSVANMTSLTNFDLFDKKVEG 335
            + L+GN NL GS SQL R SWKKI+ LN A N LHG +PSS  N                
Sbjct: 301  IDLSGNGNLQGSISQLLRKSWKKIEFLNLAENDLHGPIPSSFGN---------------- 344

Query: 336  GIPSSIARLCYLKEFDLSGNNLTGSLPEILQGTDLCVSSNSPLPSLISMRLGNNHLKGKL 395
                     C LK  DL GN L GSLPEI++G +   SS SPL +L  + L ++ L GKL
Sbjct: 345  --------FCNLKYLDLGGNYLNGSLPEIIKGIE-TSSSKSPLLNLTELYLDDSQLMGKL 395

Query: 396  PEWLSQLENLVELTLSYNLLQGPIPASLGNLKNLTKLNLPGNQLNGTLPETLGSLPELSV 455
            P WL +L+NL  L LS+N L+GPIPASL  L++L  L++  N+LNG+L +++G L EL  
Sbjct: 396  PNWLGELKNLRSLDLSWNKLEGPIPASLWTLQHLESLSIRMNELNGSLLDSIGQLSELQE 455

Query: 456  LDVSSNSLTGIISEIHFSRLSKLKFLGLSSNSFILNVSSSWIPPFQVQSLNMRSCQLGPS 515
            LDV SN L+G +SE HF +LSKL+FL + SNSF LNVS +W+PPFQV+ L+M SC LGPS
Sbjct: 456  LDVGSNQLSGSLSEQHFWKLSKLEFLYMDSNSFRLNVSPNWVPPFQVEYLDMGSCHLGPS 515

Query: 516  FPSWLKTQQGVSFLDFSNASISGPIPNWFWDISSKLSLLNVSLNQLQGQLPNPLNIA-PF 574
            FP WL++Q+ + +LDFSNASIS  IPNWFW+IS  L  L++S NQLQGQLPN LN +   
Sbjct: 516  FPVWLQSQKNLQYLDFSNASISSRIPNWFWNISFNLQYLSLSHNQLQGQLPNSLNFSFLL 575

Query: 575  ADVDFRSNLLEGPIPLPIVEIELLDLSNNHFSGPIPQNISGSMPNLIFLSVSGNRLTGKI 634
              +DF SNL EGPIP  I  +  LDLS+N FSGPIP NI   +P+L FLS+  NR+TG I
Sbjct: 576  VGIDFSSNLFEGPIPFSIKGVRFLDLSHNKFSGPIPSNIGEFLPSLYFLSLLSNRITGTI 635

Query: 635  PGSIGEMQLLQVIDLSRNSISGSISSSIGNCTFLKVLDLSYSSLSGVIPASLGQLTRLQS 694
            P SIG +  L+VID SRN+++GSI  +I NC+ L VLDL  ++LSG+IP SLG+L  LQS
Sbjct: 636  PDSIGHITSLEVIDFSRNNLTGSIPFTINNCSGLIVLDLGNNNLSGMIPKSLGRLQLLQS 695

Query: 695  LHLNNNKLTGNLPSSFQNLTSLETLDLGNNRFSGNIPSLLGNGFVGLRILSLRSNAFSGE 754
            LHLN+NKL G LPSSFQNL+SLE LDL  N  SG +PS +G  F+ L IL+LRSNAF G 
Sbjct: 696  LHLNDNKLLGELPSSFQNLSSLELLDLSYNELSGKVPSWIGTAFINLVILNLRSNAFFGR 755

Query: 755  IPSKLSNLSSLQVLDLAENNLTGSIPGSVGDLKAMAHVQNIVKYLLFGRYRGIYYEENLV 814
            +P +LSNLSSL VLDLA+NNLTG IP ++ +LKAMA  +N+  Y L+    G  YEE L+
Sbjct: 756  LPDRLSNLSSLHVLDLAQNNLTGKIPATLVELKAMAQERNMDMYSLYHNGNGSQYEERLI 815

Query: 815  INTKGSSKDTPRLFHF---IDLSGNNLHGDFPTQLTKLVGLVVLNLSRNHIGGQIPENIS 871
            + TKG S +  R       IDLS NNL G+FP  +TKL GLV LNLS NHI G+IP +IS
Sbjct: 816  VITKGQSLEYTRTLSLVVSIDLSDNNLSGEFPEGITKLSGLVFLNLSMNHIIGKIPGSIS 875

Query: 872  GLHQLASLDLSSNNLSGGIPSSLSSLSFLGYINLSRNQLSGKIPFEGHMTTFDASSFAGN 931
             L QL+SLDLSSN LSG IPSS+SSL+FLGY+NLS N  SGKIPF G MTTF   +F GN
Sbjct: 876  MLCQLSSLDLSSNKLSGTIPSSMSSLTFLGYLNLSNNNFSGKIPFAGQMTTFTELAFTGN 935

Query: 932  PGLCGDPLPVKCQDDESDKGGNVVEDDNEDEFIDKWFYFSLGLGFAAGIIVPMFIFSIKK 991
            P LCG PL  KCQD++ DK  +V+ED  +  +ID+WFY S+GLGFA GI+VP F+ +I++
Sbjct: 936  PNLCGTPLVTKCQDEDLDKRQSVLEDKIDGGYIDQWFYLSIGLGFALGILVPYFVLAIRR 995

Query: 992  PCSDAYFKFVDKIVDRL 1008
               DAYF FVDKIV  L
Sbjct: 996  SWCDAYFDFVDKIVKWL 1012

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359483308|ref|XP_002275204.2| PREDICTED: LRR receptor-like serine/threonine-protein kinase FLS2-like [Vitis vinifera]

 Score = 1014 bits (2621), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 557/1045 (53%), Positives = 713/1045 (68%), Gaps = 63/1045 (6%)

Query: 1    MGRLSVLGLMLTMLCAITSDYASYGASRFSNCSENDLDALIDFKNGLEDPESRLASWKGS 60
            M ++S+LG +L +L  IT++ A  G +   N  + +  ALIDFK+GL+DP +RL+SWKGS
Sbjct: 1    MEKISILGFILAILYFITTELACNGHTHIDNNVQYEQKALIDFKSGLKDPNNRLSSWKGS 60

Query: 61   NCCQWHGISCDDDTGAIVAINLGNPY---HVVNSDSSGSL-------------LEYLDLS 104
            N C W GISC + TG +++I+L NPY   +V  + SS +L             L+YLDLS
Sbjct: 61   NYCYWQGISCKNGTGFVISIDLHNPYPRENVYENWSSMNLSGEISPSLIKLKSLKYLDLS 120

Query: 105  FNTFNDIPIPEFLGSLENLQYLNLSEAGFTGVVPSSLGNLHRLQYFDVSAELFA------ 158
            FN+F  +PIP+F GSLENL YLNLS AGF+G +PS+L NL  LQY D+S+E         
Sbjct: 121  FNSFKAMPIPQFFGSLENLIYLNLSSAGFSGSIPSNLRNLSSLQYLDLSSEYLDDIDSEY 180

Query: 159  -----------LSADSLDWLTGLVSLKHLAMNRVDLSLVGSEWLGILKNLPNLTELHLSV 207
                       L  ++++W+T LVSLK+L MN V+LSLVGS W+ +   LP+LTELHL  
Sbjct: 181  LYDIDFEYFNNLFVENIEWMTDLVSLKYLGMNYVNLSLVGSRWVEVANKLPSLTELHLGG 240

Query: 208  CGLTGSITSITPVNLTSPAVLDLSLNHFNSLFPNWLVNISTLVYVDLSDCDLYGRIPIGF 267
            C L+GS  S + VNLTS AV+ ++ NHFNS FP WL+N+S LV +D+S   L+GRIP+G 
Sbjct: 241  CSLSGSFPSPSFVNLTSLAVIAINSNHFNSKFPEWLLNVSNLVSIDISYNQLHGRIPLGL 300

Query: 268  GELPNLQYLSLAGNNNLSGSCSQLFRGSWKKIQILNFASNKLHGKLPSSVANMTSLTNFD 327
            GELPNLQYL L+ N NL GS SQL R SWKKI++LN A N+LHGKL  S           
Sbjct: 301  GELPNLQYLDLSLNANLRGSISQLLRKSWKKIEVLNLAHNELHGKLFCS----------- 349

Query: 328  LFDKKVEGGIPSSIARLCYLKEFDLSGNNLTGSLPEILQGTDLCVSSNSPLPSLISMRLG 387
                     IPSSI   C LK  DL GN L GSLP+I++G + C SS SPLP+L  + L 
Sbjct: 350  ---------IPSSIGNFCNLKYLDLGGNYLNGSLPKIIKGLETC-SSKSPLPNLRKLYLS 399

Query: 388  NNHLKGKLPEWLSQLENLVELTLSYNLLQGPIPASLGNLKNLTKLNLPGNQLNGTLPETL 447
             N L  KLP WL +L+NL  L LS N  +GPIP SL  L++L  L L  N+LNG+LP ++
Sbjct: 400  YNQLMRKLPNWLGELKNLRALYLSSNKFEGPIPTSLWTLQHLEYLYLSRNELNGSLPVSI 459

Query: 448  GSLPELSVLDVSSNSLTGIISEIHFSRLSKLKFLGLSSNSFILNVSSSWIPPFQVQSLNM 507
            G L +L  L V SN ++G +SE HF +LS +++L + SNSF LNVS +W+PPFQV+ L +
Sbjct: 460  GQLSQLQGLFVGSNHMSGSLSEQHFLKLSNVEYLRMGSNSFHLNVSPNWVPPFQVKYLFL 519

Query: 508  RSCQLGPSFPSWLKTQQGVSFLDFSNASISGPIPNWFWDISSKLSLLNVSLNQLQGQLPN 567
             SC LGPSFP+WL++Q+ + +LD SN +IS PIP+WFW+IS  L  LN+S NQLQGQLPN
Sbjct: 520  DSCHLGPSFPAWLQSQKNLEYLDLSNDNISSPIPDWFWNISLNLQRLNLSHNQLQGQLPN 579

Query: 568  PLNIAPFADVDFRSNLLEGPIPLPIVEIELLDLSNNHFSGPIPQNISGSMPNLIFLSVSG 627
             LN    +++DF SNL EGPIP  I  + LLDLS+N FSGPIP +    +P+L F S+SG
Sbjct: 580  SLNFYGESNIDFSSNLFEGPIPFSIKGVYLLDLSHNKFSGPIPLS---KVPSLYFFSLSG 636

Query: 628  NRLTGKIPGSIGEMQLLQVIDLSRNSISGSISSSIGNCTFLKVLDLSYSSLSGVIPASLG 687
            NR+ G IP SIG +  L VID SRN+++GSI S+I NC+ L VLD+  ++L G+IP SLG
Sbjct: 637  NRIIGTIPDSIGHITSLYVIDFSRNNLTGSIPSTINNCSSLLVLDIGKNNLFGIIPKSLG 696

Query: 688  QLTRLQSLHLNNNKLTGNLPSSFQNLTSLETLDLGNNRFSGNIPSLLGNGFVGLRILSLR 747
            QL  L+SLHLN+NKL+G LPSSFQNLT L+ LDL  NR SG +P+ +G  FV L IL+LR
Sbjct: 697  QLQSLESLHLNHNKLSGELPSSFQNLTGLDVLDLSYNRLSGQVPAWIGAAFVNLVILNLR 756

Query: 748  SNAFSGEIPSKLSNLSSLQVLDLAENNLTGSIPGSVGDLKAMAHVQ-NIVKYLLFGRYRG 806
            SN F G +PS+LSNLSSL VLD+A+NNL G IP ++ +LKAMA  Q NI  Y +      
Sbjct: 757  SNLFFGRLPSRLSNLSSLHVLDIAQNNLMGEIPITLVELKAMAQEQLNI--YQINVNVNS 814

Query: 807  IYYEENLVINTKGSSKDTPRLFHF---IDLSGNNLHGDFPTQLTKLVGLVVLNLSRNHIG 863
              YEE LV+  KG S +  +       IDLS NNL G+FP ++TKL GLVVLNLSRNHI 
Sbjct: 815  SLYEERLVVIAKGQSLEYTKTLSRVVGIDLSDNNLSGEFPQEITKLFGLVVLNLSRNHIT 874

Query: 864  GQIPENISGLHQLASLDLSSNNLSGGIPSSLSSLSFLGYINLSRNQLSGKIPFEGHMTTF 923
            GQIPENIS L QL SLDLSSN L G IPSS++SL FL Y+NLS N   G+IPF G MTTF
Sbjct: 875  GQIPENISMLRQLESLDLSSNKLFGTIPSSMASLPFLSYLNLSNNNFYGEIPFTGQMTTF 934

Query: 924  DASSFAGNPGLCGDPLPVKCQDDESDKGGNVVEDDNEDEFIDKWFYFSLGLGFAAGIIVP 983
               +F GNP LCG PL  KCQD++ +K  +VV D N+  FID+WFYFS+ LGF  G++VP
Sbjct: 935  TELAFVGNPDLCGPPLATKCQDEDPNKWQSVVSDKNDGGFIDQWFYFSISLGFTMGVLVP 994

Query: 984  MFIFSIKKPCSDAYFKFVDKIVDRL 1008
             ++ +I+K   +AYF FVD+IV  L
Sbjct: 995  YYVLAIRKSWCEAYFDFVDEIVRWL 1019

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	1009
TAIR|locus:2044767	905	AT2G34930 "AT2G34930" [Arabido	0.777	0.866	0.313	4.7e-87
TAIR|locus:2144392	957	RLP53 "receptor like protein 5	0.676	0.713	0.263	7.6e-37
TAIR|locus:2120362	1249	GSO1 "GASSHO1" [Arabidopsis th	0.717	0.579	0.309	4.7e-69
TAIR|locus:2170483	1173	FLS2 "FLAGELLIN-SENSITIVE 2" [	0.725	0.624	0.290	1.2e-68
TAIR|locus:2085537	894	RLP34 "AT3G11010" [Arabidopsis	0.662	0.747	0.274	5.4e-41
TAIR|locus:2205005	1019	RLP7 "AT1G47890" [Arabidopsis	0.822	0.814	0.280	8.3e-68
TAIR|locus:2156349	1252	GSO2 "GASSHO 2" [Arabidopsis t	0.722	0.582	0.294	6.7e-63
TAIR|locus:2119430	741	RLP47 "receptor like protein 4	0.678	0.924	0.285	7.7e-60
TAIR|locus:2078102	875	RLP33 "receptor like protein 3	0.668	0.771	0.261	3.8e-40
TAIR|locus:2074633	943	RLP35 "AT3G11080" [Arabidopsis	0.715	0.765	0.269	1.1e-40

TAIR|locus:2044767 AT2G34930 "AT2G34930" [Arabidopsis thaliana (taxid:3702)]

 Score = 870 (311.3 bits), Expect = 4.7e-87, P = 4.7e-87
 Identities = 260/830 (31%), Positives = 391/830 (47%)

Query:   135 GVVPSSLGNLHRLQYFDVSAELFALSADSLDWLTGLVSLKHLAMNRVDLSLVGSEWLGIL 194
             G +  SL  L  L Y D+S+  F    +  +++  +VSL++L ++    S      LG L
Sbjct:   102 GKIHPSLTQLKFLSYLDLSSNDFN-ELEIPEFIGQIVSLRYLNLSSSSFSGEIPTSLGNL 160

Query:   195 KNLPNLTELHLSVCGLTGSITSITPVNLTSPAVLDLSLNHFNSLFPN-------WLVN-- 245
               L +L +L+    G +G++ S+   NL   + L  SL + N  + N       WL +  
Sbjct:   161 SKLESL-DLYAESFGDSGTL-SLRASNLRWLSSLSSSLKYLNMGYVNLSGAGETWLQDFS 218

Query:   246 -ISTLVYVDLSDCDLYGRIPI--GFGELPNLQYLSLAGNNNLSGSCSQLFRGSWKKIQIL 302
              IS L  + L + +L    P      +L  L+ L L+ N+  S   + LF      ++ L
Sbjct:   219 RISALKELHLFNSELKNLPPTLSSSADLKLLEVLDLSENSLNSPIPNWLF--GLTNLRKL 276

Query:   303 NFASNKLHGKLPSSVANMTSLTNFDLFDK-KVEGGIPSSIARLCYLKEFDLSGNNLTGSL 361
                 + L G +P+   N+  L   DL +   ++G IPS +  L  LK  DLS N L G +
Sbjct:   277 FLRWDFLQGSIPTGFKNLKLLETLDLSNNLALQGEIPSVLGDLPQLKFLDLSANELNGQI 336

Query:   362 PEILQGTDLCVSSNSPLPSLISMRLGNNHLKGKLPEWLSQLENLVELTLSYNLLQGPIPA 421
                L       S N    SL+ + L +N L G LPE L  L NL  L LS N   G +P+
Sbjct:   337 HGFLDA----FSRNKG-NSLVFLDLSSNKLAGTLPESLGSLRNLQTLDLSSNSFTGSVPS 391

Query:   422 SXXXXXXXXXXXXXXXQLNGTLPETLGSLPELSVLDVSSNSLTGIISEIHFSRLSKLKFL 481
             S                +NGT+ E+LG L EL  L++ +N+  G++ + HF  L  LK +
Sbjct:   392 SIGNMASLKKLDLSNNAMNGTIAESLGQLAELVDLNLMANTWGGVLQKSHFVNLRSLKSI 451

Query:   482 GXXXXXXXXXXX---XXWIPPFQVQSLNMRSCQLGPSFPSWLKTQQGVSFLDFSNASISG 538
                              WIPPF+++ + + +C++G  FP WL+ Q  ++F+   N  I  
Sbjct:   452 RLTTEPYRSLVFKLPSTWIPPFRLELIQIENCRIG-LFPMWLQVQTKLNFVTLRNTGIED 510

Query:   539 PIPN-WFWDIXXXXXXXXXXXXXXXXXXXXXXXIAPFADVDFRSNLLEGPIPLPIVEIEL 597
              IP+ WF  I                             +D  SN  EG  PL       
Sbjct:   511 TIPDSWFSGISSKVTYLILANNRIKGRLPQKLAFPKLNTIDLSSNNFEGTFPLWSTNATE 570

Query:   598 LDLSNNHFSGPIPQNISGSMPNLIFLSVSGNRLTGKIPGSIGEMQLLQVIDLSRNXXXXX 657
             L L  N+FSG +PQNI   MP +  + +  N  TG IP S+ E+  LQ++ L +N     
Sbjct:   571 LRLYENNFSGSLPQNIDVLMPRMEKIYLFSNSFTGNIPSSLCEVSGLQILSLRKNHFSGS 630

Query:   658 XXXXXXNCTFLKVLDLSYSSLSGVIPASLGQLTRLQSLHLNNNKLTGNLPSSFQNLTSLE 717
                       L  +D+S ++LSG IP SLG L  L  L LN N L G +P S +N + L 
Sbjct:   631 FPKCWHRQFMLWGIDVSENNLSGEIPESLGMLPSLSVLLLNQNSLEGKIPESLRNCSGLT 690

Query:   718 TLDLGNNRFSGNIPSLLGNGFVGLRILSLRSNAFSGEIPSKLSNLSSLQVLDLAENNLTG 777
              +DLG N+ +G +PS +G     L +L L+SN+F+G+IP  L N+ +L++LDL+ N ++G
Sbjct:   691 NIDLGGNKLTGKLPSWVGK-LSSLFMLRLQSNSFTGQIPDDLCNVPNLRILDLSGNKISG 749

Query:   778 SIPGSVGDLKAMAHVQNIVKYLLFGRYRGIYYEENLV-INTKGSSKDTPRLFHFIDLSGN 836
              IP  + +L A+A           G    ++  +NLV I T+  +++   + + I+LSGN
Sbjct:   750 PIPKCISNLTAIAR----------GTNNEVF--QNLVFIVTR--AREYEAIANSINLSGN 795

Query:   837 NLHGDFPTQLTKLVGLVVLNLSRNHIGGQIPENISGLHQXXXXXXXXXXXXXXXXXXXXX 896
             N+ G+ P ++  L+ L +LNLSRN + G IPE IS L +                     
Sbjct:   796 NISGEIPREILGLLYLRILNLSRNSMAGSIPEKISELSRLETLDLSKNKFSGAIPQSFAA 855

Query:   897 XXXXXYINLSRNQLSGKIPFEGHMTTFDASSFAGNPGLCGDPLPVKCQDD 946
                   +NLS N+L G IP    +   D S + GN  LCG PLP KC  D
Sbjct:   856 ISSLQRLNLSFNKLEGSIP--KLLKFQDPSIYIGNELLCGKPLPKKCPKD 903

GO:0006952 "defense response" evidence=ISS

GO:0007165 "signal transduction" evidence=IC

GO:0005618 "cell wall" evidence=IDA

GO:0050832 "defense response to fungus" evidence=IEP;IMP

TAIR|locus:2144392 RLP53 "receptor like protein 53" [Arabidopsis thaliana (taxid:3702)]

 Score = 430 (156.4 bits), Expect = 7.6e-37, P = 7.6e-37
 Identities = 192/729 (26%), Positives = 308/729 (42%)

Query:    88 VVNSDSSGSLLEYLDLSFNTFNDIPIPEFLGSLENLQYLNLSEAGFTGVVPSSLGNLHRL 147
             + +S  + S L YLDLS N F+   I   +G+L  L YLNL +  F+G  PSS+ NL  L
Sbjct:   137 ITSSIENLSHLTYLDLSSNHFSG-QILNSIGNLSRLTYLNLFDNQFSGQAPSSICNLSHL 195

Query:   148 QYFDVSAE-LFALSADSLDWLTGLVSLKHLAMNRVDLSLVGSEWLGILKNLPNLTELHLS 206
              + D+S    F     S+  L+ L +L  L  N+    +  S  +G   NL NLT L LS
Sbjct:   196 TFLDLSYNRFFGQFPSSIGGLSHLTTLS-LFSNKFSGQIPSS--IG---NLSNLTTLDLS 249

Query:   207 VCGLTGSITSITPVNLTSPAVLDLSLNHFNSLFPNWLVNISTLVYVDLSDCDLYGRIPIG 266
                 +G I S    NL+    L L  N+F    P+   N++ L  + + D  L G  P  
Sbjct:   250 NNNFSGQIPSFIG-NLSQLTFLGLFSNNFVGEIPSSFGNLNQLTRLYVDDNKLSGNFPNV 308

Query:   267 FGELPNLQYLSLAGNNNLSGSCSQLFRGSWKKIQILNFASNKLHGKLPSSVANMTSLTNF 326
                L  L  LSL+ NN  +G+       S   +   + + N   G  PS +  + SLT  
Sbjct:   309 LLNLTGLSLLSLS-NNKFTGTLPPNIT-SLSNLMDFDASDNAFTGTFPSFLFTIPSLTYI 366

Query:   327 DLFDKKVEGGIP-SSIARLCYLKEFDLSGNNLTGSLPEILQGT------DLC-VSSNSP- 377
              L   +++G +   +I+    L E D+  NN  G +P  +         D+  +++  P 
Sbjct:   367 RLNGNQLKGTLEFGNISSPSNLYELDIGNNNFIGPIPSSISKLVKLFRLDISHLNTQGPV 426

Query:   378 -------LPSLISMRLG--NNHLKGKLPEWLSQLENLVELTLSYNLLQGPIPASXXXXXX 428
                    L SL+ + +   N   +  L  +LS  + L+ L LS N +     +S      
Sbjct:   427 DFSIFSHLKSLLDLNISHLNTTTRIDLNYFLSYFKRLLLLDLSGNHVSATNKSSVSDPPS 486

Query:   429 XXXXXXXXXQLNGT-LPETLGSLPELSVLDVSSNSLTGIISEIHFSRLSKLKFLGXXXXX 487
                          T  PE + +  EL  LD+S+N + G + +  + RL  L ++      
Sbjct:   487 QLIQSLYLSGCGITEFPEFVRTQHELGFLDISNNKIKGQVPDWLW-RLPILYYVNLSNNT 545

Query:   488 XXXXXXXXWIPPFQVQSLNMRSCQLGPSFPSWLKTQQGVSFLDFSNASISGPIPNWFWDI 547
                        P  +  L   +  +G   PS++   + ++ LD S+ + +G IP     +
Sbjct:   546 LIGFQRPSKPEPSLLYLLGSNNNFIG-KIPSFICGLRSLNTLDLSDNNFNGSIPRCMGHL 604

Query:   548 XXXXXXXXXXXXXXXXXXXXXXXIAPFADVDFRSNLLEGPIPLPIV---EIELLDLSNNH 604
                                          +D   N L G +P  +     +E+L++ +N 
Sbjct:   605 KSTLSVLNLRQNHLSGGLPKQI-FEILRSLDVGHNQLVGKLPRSLSFFSTLEVLNVESNR 663

Query:   605 FSGPIPQNISGSMPNLIFLSVSGNRLTGKIPGSIGEMQLLQVIDLSRNXXXXXX-XXXXX 663
              +   P  +S S+P L  L +  N   G I  +      L++ID+S N            
Sbjct:   664 INDTFPFWLS-SLPKLQVLVLRSNAFHGPIHEAT--FPELRIIDISHNRFNGTLPTEYFV 720

Query:   664 NCTFLKVLDLSYSSLSGVIPASLGQLTRLQSLHLNNNKLTGNLPSSFQNLTSLETLDLGN 723
               + +  L  +    +     S G L    S+ L N  +   L    + LT    +D   
Sbjct:   721 KWSAMSSLGKNEDQSNEKYMGS-G-LYYQDSMVLMNKGVAMEL---VRILTIYTAVDFSG 775

Query:   724 NRFSGNIPSLLGNGFVGLRILSLRSNAFSGEIPSKLSNLSSLQVLDLAENNLTGSIPGSV 783
             NRF G IP  +G     L +LSL +NAFSG +PS + NL++L+ LD+++N LTG IP  +
Sbjct:   776 NRFEGEIPKSIGL-LKELLVLSLSNNAFSGHMPSSMGNLTALESLDVSKNKLTGEIPQEL 834

Query:   784 GDLKAMAHV 792
             GDL  +A++
Sbjct:   835 GDLSFLAYM 843

GO:0005576 "extracellular region" evidence=ISM

GO:0006952 "defense response" evidence=ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0007165 "signal transduction" evidence=IC

TAIR|locus:2120362 GSO1 "GASSHO1" [Arabidopsis thaliana (taxid:3702)]

 Score = 709 (254.6 bits), Expect = 4.7e-69, P = 4.7e-69
 Identities = 243/786 (30%), Positives = 368/786 (46%)

Query:   113 IPEFLGSLENLQYLNLSEAGFTGVVPSSLGNLHRLQYFDVSAELFA--LSADSLDWLTGL 170
             I  + G  +NL +L+LS     G +P++L NL  L+    S  LF+  L+ +    L  L
Sbjct:    87 ISPWFGRFDNLIHLDLSSNNLVGPIPTALSNLTSLE----SLFLFSNQLTGEIPSQLGSL 142

Query:   171 VSLKHLAMNRVDLSLVGS--EWLGILKNLPNLTELHLSVCGLTGSITSITPVNLTSPAVL 228
             V+++ L +   D  LVG   E LG   NL NL  L L+ C LTG I S     L     L
Sbjct:   143 VNIRSLRIG--DNELVGDIPETLG---NLVNLQMLALASCRLTGPIPSQLG-RLVRVQSL 196

Query:   229 DLSLNHFNSLFPNWLVNISTLVYVDLSDCDLYGRIPIGFGELPNLQYLSLAGNNNLSGSC 288
              L  N+     P  L N S L     ++  L G IP   G L NL+ L+LA NN+L+G  
Sbjct:   197 ILQDNYLEGPIPAELGNCSDLTVFTAAENMLNGTIPAELGRLENLEILNLA-NNSLTGEI 255

Query:   289 -SQLFRGSWKKIQILNFASNKLHGKLPSSVANMTSLTNFDLFDKKVEGGIPSSIARLCYL 347
              SQL  G   ++Q L+  +N+L G +P S+A++ +L   DL    + G IP     +  L
Sbjct:   256 PSQL--GEMSQLQYLSLMANQLQGLIPKSLADLGNLQTLDLSANNLTGEIPEEFWNMSQL 313

Query:   348 KEFDLSGNNLTGSLPE------------ILQGTDLCVS---SNSPLPSLISMRLGNNHLK 392
              +  L+ N+L+GSLP+            +L GT L        S   SL  + L NN L 
Sbjct:   314 LDLVLANNHLSGSLPKSICSNNTNLEQLVLSGTQLSGEIPVELSKCQSLKQLDLSNNSLA 373

Query:   393 GKLPEWLSQLENLVELTLSYNLLQGPIPASXXXXXXXXXXXXXXXQLNGTLPETLGSLPE 452
             G +PE L +L  L +L L  N L+G +  S                L G LP+ + +L +
Sbjct:   374 GSIPEALFELVELTDLYLHNNTLEGTLSPSISNLTNLQWLVLYHNNLEGKLPKEISALRK 433

Query:   453 LSVLDVSSNSLTGIISEIHFSRLSKLKFLGXXXXXXXXXXXXXWIPPF--QVQSLNM--- 507
             L VL +  N  +G I +      + LK +               IPP   +++ LN+   
Sbjct:   434 LEVLFLYENRFSGEIPQ-EIGNCTSLKMIDMFGNHFEGE-----IPPSIGRLKELNLLHL 487

Query:   508 RSCQLGPSFPSWLKTQQGVSFLDFSNASISGPIPNWFWDIXXXXXXXXXXXXXXXXXXXX 567
             R  +L    P+ L     ++ LD ++  +SG IP+ F  +                    
Sbjct:   488 RQNELVGGLPASLGNCHQLNILDLADNQLSGSIPSSFGFLKGLEQLMLYNNSLQGNLPDS 547

Query:   568 XXXIAPFADVDFRSNLLEGPI-PLPIVEIEL-LDLSNNHFSGPIPQNISGSMPNLIFLSV 625
                +     ++   N L G I PL      L  D++NN F   IP  + G+  NL  L +
Sbjct:   548 LISLRNLTRINLSHNRLNGTIHPLCGSSSYLSFDVTNNGFEDEIPLEL-GNSQNLDRLRL 606

Query:   626 SGNRLTGKIPGSIGEMQLLQVIDLSRNXXXXXXXXXXXNCTFLKVLDLSYSSLSGVIPAS 685
               N+LTGKIP ++G+++ L ++D+S N            C  L  +DL+ + LSG IP  
Sbjct:   607 GKNQLTGKIPWTLGKIRELSLLDMSSNALTGTIPLQLVLCKKLTHIDLNNNFLSGPIPPW 666

Query:   686 LGQLTRLQSLHLNNNKLTGNLPSSFQNLTSLETLDLGNNRFSGNIPSLLGNGFVGLRILS 745
             LG+L++L  L L++N+   +LP+   N T L  L L  N  +G+IP  +GN    L +L+
Sbjct:   667 LGKLSQLGELKLSSNQFVESLPTELFNCTKLLVLSLDGNSLNGSIPQEIGN-LGALNVLN 725

Query:   746 LRSNAFSGEIPSKLSNLSSLQVLDLAENNLTGSIPGSVGDLKAMAHVQNIVKYLLFGRYR 805
             L  N FSG +P  +  LS L  L L+ N+LTG IP  +G L+ +   Q+ +  L +  + 
Sbjct:   726 LDKNQFSGSLPQAMGKLSKLYELRLSRNSLTGEIPVEIGQLQDL---QSALD-LSYNNFT 781

Query:   806 GIYYEENLVINTKGSSKDTPRLFHFIDLSGNNLHGDFPTQLTKLVGLVVLNLSRNHIGGQ 865
             G   +    I T  S  +T      +DLS N L G+ P  +  +  L  LN+S N++GG+
Sbjct:   782 G---DIPSTIGTL-SKLET------LDLSHNQLTGEVPGSVGDMKSLGYLNVSFNNLGGK 831

Query:   866 IPENIS 871
             + +  S
Sbjct:   832 LKKQFS 837

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA;ISS

GO:0005524 "ATP binding" evidence=IEA;ISS

GO:0006468 "protein phosphorylation" evidence=IEA;ISS

GO:0007169 "transmembrane receptor protein tyrosine kinase signaling pathway" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0008544 "epidermis development" evidence=IGI

GO:0009790 "embryo development" evidence=IGI

TAIR|locus:2170483 FLS2 "FLAGELLIN-SENSITIVE 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 704 (252.9 bits), Expect = 1.2e-68, P = 1.2e-68
 Identities = 225/775 (29%), Positives = 339/775 (43%)

Query:   186 VGSEWLGILKNLPNLTELHLSVCGLTGSITSITPVNLTSPAVLDLSLNHFNSLFPNWLVN 245
             + ++ LG+L +   +  L    C  TG IT  +  ++ S ++L+  L     L P  + N
Sbjct:    41 ISNDPLGVLSDWTIIGSLRH--CNWTG-ITCDSTGHVVSVSLLEKQLE--GVLSPA-IAN 94

Query:   246 ISTLVYVDLSDCDLYGRIPIGFGELPNLQYLSLAGNNNLSGSCSQLFRGSW--KKIQILN 303
             ++ L  +DL+     G+IP   G+L  L  L L   N  SGS      G W  K I  L+
Sbjct:    95 LTYLQVLDLTSNSFTGKIPAEIGKLTELNQLILY-LNYFSGSIPS---GIWELKNIFYLD 150

Query:   304 FASNKLHGKLPSSVANMTSLTNFDLFDKKVEGGIPSSIARLCYLKEFDLSGNNLTGSLPE 363
               +N L G +P  +   +SL         + G IP  +  L +L+ F  +GN+LTGS+P 
Sbjct:   151 LRNNLLSGDVPEEICKTSSLVLIGFDYNNLTGKIPECLGDLVHLQMFVAAGNHLTGSIPV 210

Query:   364 ILQGTDLCVSSNSPLPSLISMRLGNNHLKGKLPEWLSQLENLVELTLSYNLLQGPIPASX 423
              + GT         L +L  + L  N L GK+P     L NL  L L+ NLL+G IPA  
Sbjct:   211 SI-GT---------LANLTDLDLSGNQLTGKIPRDFGNLLNLQSLVLTENLLEGDIPAEI 260

Query:   424 XXXXXXXXXXXXXXQLNGTLPETLGSLPELSVLDVSSNSLTGIISEIHFSRLSKLKFLGX 483
                           QL G +P  LG+L +L  L +  N LT  I    F RL++L  LG 
Sbjct:   261 GNCSSLVQLELYDNQLTGKIPAELGNLVQLQALRIYKNKLTSSIPSSLF-RLTQLTHLGL 319

Query:   484 XXXXXXX--XXXXXWIPPFQVQSLNMRSCQLGPSFPSWLKTQQGVSFLDFSNASISGPIP 541
                           ++   +V  L + S      FP  +   + ++ L     +ISG +P
Sbjct:   320 SENHLVGPISEEIGFLESLEV--LTLHSNNFTGEFPQSITNLRNLTVLTVGFNNISGELP 377

Query:   542 NWFWDIXXXXXXXXXXXXXXXXXXXXXXXIAPFADVDFRSNLLEGPIPLPIVEIEL--LD 599
                  +                             +D   N + G IP     + L  + 
Sbjct:   378 ADLGLLTNLRNLSAHDNLLTGPIPSSISNCTGLKLLDLSHNQMTGEIPRGFGRMNLTFIS 437

Query:   600 LSNNHFSGPIPQNISGSMPNLIFLSVSGNRLTGKIPGSIGEMQLLQVIDLSRNXXXXXXX 659
             +  NHF+G IP +I  +  NL  LSV+ N LTG +   IG++Q L+++ +S N       
Sbjct:   438 IGRNHFTGEIPDDIF-NCSNLETLSVADNNLTGTLKPLIGKLQKLRILQVSYNSLTGPIP 496

Query:   660 XXXXNCTFLKVLDLSYSSLSGVIPASLGQLTRLQSLHLNNNKLTGNLPSSFQNLTSLETL 719
                 N   L +L L  +  +G IP  +  LT LQ L + +N L G +P    ++  L  L
Sbjct:   497 REIGNLKDLNILYLHSNGFTGRIPREMSNLTLLQGLRMYSNDLEGPIPEEMFDMKLLSVL 556

Query:   720 DLGNNRFSGNIPSLLGNGFVGLRILSLRSNAFSGEIPSKLSNLSSLQVLDLAENNLTGSI 779
             DL NN+FSG IP+L       L  LSL+ N F+G IP+ L +LS L   D+++N LTG+I
Sbjct:   557 DLSNNKFSGQIPALFSK-LESLTYLSLQGNKFNGSIPASLKSLSLLNTFDISDNLLTGTI 615

Query:   780 PGSV-GDLKAMAHVQNIVKYLLFG---RYRG-IYYEENLVINTKGSSKDTPRLFH----- 829
             PG +   LK M    N    LL G   +  G +   + + ++    S   PR        
Sbjct:   616 PGELLASLKNMQLYLNFSNNLLTGTIPKELGKLEMVQEIDLSNNLFSGSIPRSLQACKNV 675

Query:   830 F-IDLSGNNLHGDFPTQLTKLVGLVV-LNLSRNHIGGQIPENISGLHQXXXXXXXXXXXX 887
             F +D S NNL G  P ++ + + +++ LNLSRN   G+IP++   +              
Sbjct:   676 FTLDFSQNNLSGHIPDEVFQGMDMIISLNLSRNSFSGEIPQSFGNMTHLVSLDLSSNNLT 735

Query:   888 XXXXXXXXXXXXXXYINLSRNQLSGKIPFEGHMTTFDASSFAGNPGLCGDPLPVK 942
                           ++ L+ N L G +P  G     +AS   GN  LCG   P+K
Sbjct:   736 GEIPESLANLSTLKHLKLASNNLKGHVPESGVFKNINASDLMGNTDLCGSKKPLK 790

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA;ISS

GO:0004713 "protein tyrosine kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA;ISS

GO:0006468 "protein phosphorylation" evidence=ISS

GO:0007169 "transmembrane receptor protein tyrosine kinase signaling pathway" evidence=ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0004675 "transmembrane receptor protein serine/threonine kinase activity" evidence=ISS

GO:0016020 "membrane" evidence=ISS;IDA

GO:0016045 "detection of bacterium" evidence=IMP

GO:0005886 "plasma membrane" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0042742 "defense response to bacterium" evidence=RCA;IMP

GO:0052544 "defense response by callose deposition in cell wall" evidence=IMP

GO:0010359 "regulation of anion channel activity" evidence=IMP

GO:0016310 "phosphorylation" evidence=RCA

GO:0005768 "endosome" evidence=IDA

GO:0006898 "receptor-mediated endocytosis" evidence=IDA

TAIR|locus:2085537 RLP34 "AT3G11010" [Arabidopsis thaliana (taxid:3702)]

 Score = 467 (169.5 bits), Expect = 5.4e-41, P = 5.4e-41
 Identities = 198/722 (27%), Positives = 305/722 (42%)

Query:    88 VVNSDSSGSLLEYLDLSFNTFNDIPIPEFLGSLENLQYLNLSEAGFTGVVPSSLGNLHRL 147
             ++NS  + S L  LDLSFN F+   IP  +G+L +L +L LS   F G +PSS+GNL  L
Sbjct:    98 ILNSIGNLSRLTSLDLSFNQFSG-QIPSSIGNLSHLTFLGLSGNRFFGQIPSSIGNLSHL 156

Query:   148 QYFDVSAE-LFALSADSLDWLTGLVSLKHLAMNRVDLSLVGSEWLGILKNLPNLTELHLS 206
              +  +S    F     S+  L+ L +L HL+ N+    +  S  +G   NL  L  L+LS
Sbjct:   157 TFLGLSGNRFFGQFPSSIGGLSNLTNL-HLSYNKYSGQIPSS--IG---NLSQLIVLYLS 210

Query:   207 VCGLTGSITSITPVNLTSPAVLDLSLNHFNSLFPNWLVNISTLVYVDLSDCDLYGRIPIG 266
             V    G I S    NL     LD+S N     FPN L+N++ L  V LS+    G +P  
Sbjct:   211 VNNFYGEIPSSFG-NLNQLTRLDVSFNKLGGNFPNVLLNLTGLSVVSLSNNKFTGTLPPN 269

Query:   267 FGELPNLQYLSLAGNNNLSGSCSQLFRGSWKKIQILNFASNKLHGKLP-SSVANMTSLTN 325
                L NL     A +N  +G+    F      +  L  + N+L G L   ++++ ++L  
Sbjct:   270 ITSLSNLMAF-YASDNAFTGTFPS-FLFIIPSLTYLGLSGNQLKGTLEFGNISSPSNLQY 327

Query:   326 FDLFDKKVEGGIPSSIARLCYLKEFDLSGNNLTGSLPEILQGTDLCVSSNSPLPSLISMR 385
              ++      G IPSSI++L  L+E  +S  N T   P      D  + S+  L SL  +R
Sbjct:   328 LNIGSNNFIGPIPSSISKLINLQELGISHLN-TQCRP-----VDFSIFSH--LKSLDDLR 379

Query:   386 LGN-NHLKGKLPEWLSQLENLVELTLSYNLLQGPIPASXXXXXXXXXXXXXXXQLNGT-- 442
             L         L + L   + L  L LS NL+     +S                  G   
Sbjct:   380 LSYLTTTTIDLNDILPYFKTLRSLDLSGNLVSATNKSSVSSDPPSQSIQSLYLSGCGITD 439

Query:   443 LPETLGSLPELSVLDVSSNSLTGIISEIHFSRLSKLKFLGXXXXXXXXXXXXXWIPPFQV 502
              PE L +  EL  LDVS+N + G +    ++ L  L +L                 P   
Sbjct:   440 FPEILRTQHELGFLDVSNNKIKGQVPGWLWT-LPNLFYLNLSNNTFIGFQRPTKPEPSMA 498

Query:   503 QSLNMRSCQLGPSFPSWLKTQQGVSFLDFSNASISGPIPNWFWDIXXXXXXXXXXXXXXX 562
               L   +   G   PS++   + +  LD S+ + SG IP    ++               
Sbjct:   499 YLLGSNNNFTG-KIPSFICELRSLYTLDLSDNNFSGSIPRCMENLKSNLSELNLRQNNLS 557

Query:   563 XXXXXXXXIAPFADVDFRSNLLEGPIPLPI---VEIELLDLSNNHFSGPIPQNISGSMPN 619
                           +D   N L G +P  +     +E+L++ +N  +   P  +S S+  
Sbjct:   558 GGFPEHI-FESLRSLDVGHNQLVGKLPRSLRFFSNLEVLNVESNRINDMFPFWLS-SLQK 615

Query:   620 LIFLSVSGNRLTGKIPGSIGEMQLLQVIDLSRNXXXXXX--------XXXXXNCTFLKVL 671
             L  L +  N   G I  ++     L++ID+S N                     T+    
Sbjct:   616 LQVLVLRSNAFHGPINQAL--FPKLRIIDISHNHFNGSLPTEYFVEWSRMSSLGTYEDGS 673

Query:   672 DLSYSSLSGVIPASL--------GQLTRLQSLH----LNNNKLTGNLPSSFQNLTSLETL 719
             +++Y   SG    S+         +L R+ +++     + NK  G +P S   L  L  L
Sbjct:   674 NVNYLG-SGYYQDSMVLMNKGVESELVRILTIYTAVDFSGNKFEGEIPKSIGLLKELHVL 732

Query:   720 DLGNNRFSGNIPSLLGNGFVGLRILSLRSNAFSGEIPSKLSNLSSLQVLDLAENNLTGSI 779
             +L NN F+G+IPS +GN    L  L +  N   GEIP ++ NLS L  ++ + N LTG +
Sbjct:   733 NLSNNAFTGHIPSSIGN-LTALESLDVSQNKLYGEIPQEIGNLSLLSYMNFSHNQLTGLV 791

Query:   780 PG 781
             PG
Sbjct:   792 PG 793

GO:0005575 "cellular_component" evidence=ND

GO:0006952 "defense response" evidence=ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0007165 "signal transduction" evidence=IC

TAIR|locus:2205005 RLP7 "AT1G47890" [Arabidopsis thaliana (taxid:3702)]

 Score = 692 (248.7 bits), Expect = 8.3e-68, P = 8.3e-68
 Identities = 253/901 (28%), Positives = 388/901 (43%)

Query:   122 NLQYLNLSEAGFTGVVPS--SLGNLHRLQYFDVSAELFALSA--DSLDWLTGLVSLKHLA 177
             N+  L+LS     G + S  SL  L  L+  +++   F  S      D LTGL   + L 
Sbjct:   117 NVIGLDLSSIFLYGQLKSNSSLFKLRHLRDLNLANNNFNNSPIPAEFDKLTGL---ERLD 173

Query:   178 MNRVDLSLVGSEWLGILKNLPNLTELHLSVCGLTG-------SIT-SITPV---NLTSPA 226
             +++  LS  G   + +L+ L  L  L LS     G       SI  S  P+   NL +  
Sbjct:   174 LSQSSLS--GQIPINLLQ-LTKLVSLDLSSSDFFGDESFHYLSIDKSFLPLLARNLRNLR 230

Query:   227 VLDLSLNHFNSLFPNWLVNISTLVYVDLSDCDLYGRIPIGFGELPNLQYLSLAGNNNLSG 286
              LD+S    +S  P    NI +L  ++L+ C+L+G  P     +PNLQ + L  N NL G
Sbjct:   231 ELDMSYVKISSEIPEEFSNIRSLRSLNLNGCNLFGEFPSSILLIPNLQSIDLGNNPNLRG 290

Query:   287 SCSQLFRG-SWKKIQILNFASNKLHGKLPSSVANMTSLTNFDLFDKKVEGGIPSSIARLC 345
             +        S  K+ IL + S    G +P S++++ +LT+  L      G IP S+  L 
Sbjct:   291 NLPVFHENNSLLKLTIL-YTS--FSGAIPDSISSLKNLTSLTLSVSYFSGKIPFSLGNLS 347

Query:   346 YLKEFDLSGNNLTGSLPEIL----QGTDLCVSSNS---PLPSLIS-------MRLGNNHL 391
             +L    LS NNL G +P  +    Q T+  V  N     LP+ +S       + L +N  
Sbjct:   348 HLSHLSLSSNNLIGEIPSSIGNLNQLTNFYVGGNKLSGNLPATLSNLTKLNTISLSSNQF 407

Query:   392 KGKLPEWLSQLENLVELTLSYNLLQGPIPASXXXXXXXXXXXXXXXQLNGTLP-ETLGSL 450
              G LP  +SQL  L       N   G I +                QLN  +  E +  L
Sbjct:   408 TGSLPPSISQLSKLKFFFADDNPFIGAILSPLLKIPSLTRIHLSYNQLNDLVGIENIFML 467

Query:   451 PELSVLDVSSNSLTGIISEIHFSRLSKLKFLGXXXXXXXXXXXXXWIPPF--QVQSLNMR 508
             P L    +   + T +   +  +  S LK LG                 F   ++ L++R
Sbjct:   468 PNLETFYIYHYNYTKV-RPLDLNVFSSLKQLGTLYISRIPISTTNITSDFPSNLEYLSLR 526

Query:   509 SCQLGPSFPSWLKTQQGVSFLDFSNASISGPIPNWFWDIXXXXXXXXXXXXXXXXXXXXX 568
             SC +   FP +++  + +  LD SN  I G +P+W W +                     
Sbjct:   527 SCNI-TDFPEFIRKGRNLQILDLSNNKIKGQVPDWLWRMPTLNSVDLSNNSLSGFHVSVK 585

Query:   569 XXI-APFADVDFRSNLLEGPIPLPIVEIELLDLSNNHFSGPIPQNISGSMPNLIFLSVSG 627
                 +    VD  SN  +GP+ LP   +     SNN+F+G IP++I G + +L  L +S 
Sbjct:   586 ASPESQLTSVDLSSNAFQGPLFLPSKSLRYFSGSNNNFTGKIPRSICG-LSSLEILDLSN 644

Query:   628 NRLTGKIPGSIGE-MQLLQVIDLSRNXXXXXXXXXXXNCTFLKVLDLSYSSLSGVIPASL 686
             N L G +P  +   M  L  +DL  N           N T L+ LD+S++ + G +P SL
Sbjct:   645 NNLNGSLPWCLETLMSSLSDLDLRNNSLSGSLPEIFMNATKLRSLDVSHNRMEGKLPGSL 704

Query:   687 GQLTRLQSLHLNNNKLTGNLPSSFQNLTSLETLDLGNNRFSGNIPSLLGN--GFVGLRIL 744
                + L+ L++ +N++    P    +L  L+ L L +N+F G + ++ G   GF  L+I+
Sbjct:   705 TGCSSLEVLNVGSNRINDMFPFELNSLQKLQVLVLHSNKFHGTLHNVDGVWFGFPQLQII 764

Query:   745 SLRSNAFSGEIPSKLSNLSSLQVLDLAENNLTGSIPGSVGDLKAMAHVQNIVKYLLFGRY 804
              +  N F G +PS    ++   +    +NN+    P          ++QN   Y   G  
Sbjct:   765 DVSHNDFFGILPSDYF-MNWTAMSSKKDNNIE---P---------EYIQNPSVY---GSS 808

Query:   805 RGIYYEENLVINTKGSSKDTPR---LFHFIDLSGNNLHGDFPTQLTKLVGLVVLNLSRNH 861
              G YY  +LV+ +KG S +  R   ++  IDLSGN LHG  P  +  L  L +LN+S N 
Sbjct:   809 LG-YYT-SLVLMSKGVSMEMERVLTIYTAIDLSGNQLHGKIPDSIGLLKELRILNMSSNG 866

Query:   862 IGGQIPENISGLHQXXXXXXXXXXXXXXXXXXXXXXXXXXYINLSRNQLSGKIPFEGHMT 921
               G IP +++ L                            +IN+S NQL G IP      
Sbjct:   867 FTGHIPSSLANLKNLESLDISQNNISGEIPPELGTLSSLAWINVSHNQLVGSIPQGTQFQ 926

Query:   922 TFDASSFAGNPGLCGDPLPVKCQD-DESDKGGNVVEDDNEDEFIDKWFYFSLGLGFAAGI 980
                 SS+ GNPGL G  L   C    ES        +  E+E  + + + + GLGFA G+
Sbjct:   927 RQKCSSYEGNPGLNGPSLENVCGHIKESTPTQTEPLETKEEEEEESFSWIAAGLGFAPGV 986

Query:   981 I 981
             +
Sbjct:   987 V 987

GO:0006952 "defense response" evidence=ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0007165 "signal transduction" evidence=IC;RCA

GO:0002237 "response to molecule of bacterial origin" evidence=RCA

GO:0010103 "stomatal complex morphogenesis" evidence=RCA

GO:0048443 "stamen development" evidence=RCA

TAIR|locus:2156349 GSO2 "GASSHO 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 664 (238.8 bits), Expect = 6.7e-63, P = 6.7e-63
 Identities = 228/774 (29%), Positives = 355/774 (45%)

Query:   117 LGSLENLQYLNLSEAGFTGVVPSSLGNLHR-LQYFDVSAELFALSADSLDWLTGLVSLKH 175
             +G   NL +++LS     G +P++L NL   L+   + + L  LS D    L  LV+LK 
Sbjct:    91 IGRFNNLIHIDLSSNRLVGPIPTTLSNLSSSLESLHLFSNL--LSGDIPSQLGSLVNLKS 148

Query:   176 LAMNRVDLSLVGSEWLGILKNLPNLTELHLSVCGLTGSITSITPVNLTSPAVLDLSLNHF 235
             L +   +L+    E  G   NL NL  L L+ C LTG I S     L     L L  N  
Sbjct:   149 LKLGDNELNGTIPETFG---NLVNLQMLALASCRLTGLIPSRFG-RLVQLQTLILQDNEL 204

Query:   236 NSLFPNWLVNISTLVYVDLSDCDLYGRIPIGFGELPNLQYLSLAGNNNLSGSC-SQLFRG 294
                 P  + N ++L     +   L G +P     L NLQ L+L G+N+ SG   SQL  G
Sbjct:   205 EGPIPAEIGNCTSLALFAAAFNRLNGSLPAELNRLKNLQTLNL-GDNSFSGEIPSQL--G 261

Query:   295 SWKKIQILNFASNKLHGKLPSSVANMTSLTNFDLFDKKVEGGIPSSIARLCYLKEFDLSG 354
                 IQ LN   N+L G +P  +  + +L   DL    + G I     R+  L+   L+ 
Sbjct:   262 DLVSIQYLNLIGNQLQGLIPKRLTELANLQTLDLSSNNLTGVIHEEFWRMNQLEFLVLAK 321

Query:   355 NNLTGSLPEILQGTD-----LCVSS---NSPLPSLIS-------MRLGNNHLKGKLPEWL 399
             N L+GSLP+ +   +     L +S    +  +P+ IS       + L NN L G++P+ L
Sbjct:   322 NRLSGSLPKTICSNNTSLKQLFLSETQLSGEIPAEISNCQSLKLLDLSNNTLTGQIPDSL 381

Query:   400 SQLENLVELTLSYNLLQGPIPASXXXXXXXXXXXXXXXQLNGTLPETLGSLPELSVLDVS 459
              QL  L  L L+ N L+G + +S                L G +P+ +G L +L ++ + 
Sbjct:   382 FQLVELTNLYLNNNSLEGTLSSSISNLTNLQEFTLYHNNLEGKVPKEIGFLGKLEIMYLY 441

Query:   460 SNSLTGIISEIHFSRLSKLKFLGXXXXXXXXXXXXXWIPPFQVQSLNMRSCQLGPSFPSW 519
              N  +G +  +     ++L+ +                    +  L++R  +L  + P+ 
Sbjct:   442 ENRFSGEMP-VEIGNCTRLQEIDWYGNRLSGEIPSSIGRLKDLTRLHLRENELVGNIPAS 500

Query:   520 LKTQQGVSFLDFSNASISGPIPNWFWDIXXXXXXXXXXXXXXXXXXXXXXXIAPFADVDF 579
             L     ++ +D ++  +SG IP+ F  +                       +     ++F
Sbjct:   501 LGNCHQMTVIDLADNQLSGSIPSSFGFLTALELFMIYNNSLQGNLPDSLINLKNLTRINF 560

Query:   580 RSNLLEGPI-PLPIVEIEL-LDLSNNHFSGPIPQNISGSMPNLIFLSVSGNRLTGKIPGS 637
              SN   G I PL      L  D++ N F G IP  + G   NL  L +  N+ TG+IP +
Sbjct:   561 SSNKFNGSISPLCGSSSYLSFDVTENGFEGDIPLEL-GKSTNLDRLRLGKNQFTGRIPRT 619

Query:   638 IGEMQLLQVIDLSRNXXXXXXXXXXXNCTFLKVLDLSYSSLSGVIPASLGQLTRLQSLHL 697
              G++  L ++D+SRN            C  L  +DL+ + LSGVIP  LG+L  L  L L
Sbjct:   620 FGKISELSLLDISRNSLSGIIPVELGLCKKLTHIDLNNNYLSGVIPTWLGKLPLLGELKL 679

Query:   698 NNNKLTGNLPSSFQNLTSLETLDLGNNRFSGNIPSLLGNGFVGLRILSLRSNAFSGEIPS 757
             ++NK  G+LP+   +LT++ TL L  N  +G+IP  +GN    L  L+L  N  SG +PS
Sbjct:   680 SSNKFVGSLPTEIFSLTNILTLFLDGNSLNGSIPQEIGN-LQALNALNLEENQLSGPLPS 738

Query:   758 KLSNLSSLQVLDLAENNLTGSIPGSVGDLKAMAHVQNIVKYLLFGRYRGIYYEENLVINT 817
              +  LS L  L L+ N LTG IP  +G L+ +   Q+ +  L +  + G        I+T
Sbjct:   739 TIGKLSKLFELRLSRNALTGEIPVEIGQLQDL---QSALD-LSYNNFTGRIPS---TIST 791

Query:   818 KGSSKDTPRLFHFIDLSGNNLHGDFPTQLTKLVGLVVLNLSRNHIGGQIPENIS 871
                    P+L   +DLS N L G+ P Q+  +  L  LNLS N++ G++ +  S
Sbjct:   792 ------LPKL-ESLDLSHNQLVGEVPGQIGDMKSLGYLNLSYNNLEGKLKKQFS 838

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA;ISS

GO:0004713 "protein tyrosine kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA;ISS

GO:0006468 "protein phosphorylation" evidence=IEA;ISS

GO:0007169 "transmembrane receptor protein tyrosine kinase signaling pathway" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0009553 "embryo sac development" evidence=IMP

GO:0008544 "epidermis development" evidence=IGI

GO:0009790 "embryo development" evidence=IGI

TAIR|locus:2119430 RLP47 "receptor like protein 47" [Arabidopsis thaliana (taxid:3702)]

 Score = 617 (222.3 bits), Expect = 7.7e-60, P = 7.7e-60
 Identities = 210/736 (28%), Positives = 315/736 (42%)

Query:   272 NLQYLSLAGNNNLSGSCSQLFRGSWKKIQILNFASNKLHGKLPSSVANMTSLTNFDLFDK 331
             +LQY  L  N  L  + S LFR   + +Q L   SN L G LP S+ N+  L    L + 
Sbjct:    30 DLQYSHL--NGPLRSN-SSLFR--LQHLQKLVLGSNHLSGILPDSIGNLKRLKVLVLVNC 84

Query:   332 KVEGGIPSSIARLCYLKEFDLSGNNLTGSLPEILQGTDLCVSSNSPLPSLISMRLGNNHL 391
              + G IPSS+  L YL   DLS N+ T   P+ +   +        L S+  + LG+N L
Sbjct:    85 NLFGKIPSSLGNLSYLTHLDLSYNDFTSEGPDSMGNLNRLTDMLLKLSSVTWIDLGDNQL 144

Query:   392 KGKLPEWLSQLENLVELTLSYNLLQGPIPASXXXXXXXXXXXXXXXQLNGTLPETLGSL- 450
             KG LP  +S L  L    +S N   G IP+S                 +G  P  +G++ 
Sbjct:   145 KGMLPSNMSSLSKLEAFDISGNSFSGTIPSSLFMIPSLILLHLGRNDFSG--PFEIGNIS 202

Query:   451 -PE-LSVLDVSSNSLTGIISEIH-FSRLSKLKFLGXXXXXXXXXXXXXWIPPFQVQSLNM 507
              P  L +L++  N+    I ++  FS L  L +L                 P  ++ L +
Sbjct:   203 SPSNLQLLNIGRNNFNPDIVDLSIFSPLLSLGYLDVSGINLKISSTVSL--PSPIEYLGL 260

Query:   508 RSCQLGPSFPSWLKTQQGVSFLDFSNASISGPIPNWFWDIXXXXXXXXXXXXXXXXXXXX 567
              SC +   FP +L+ Q  + +LD S   I G +P W W +                    
Sbjct:   261 LSCNIS-EFPKFLRNQTSLEYLDISANQIEGQVPEWLWSLPELRYVNISHNSFNGFEGPA 319

Query:   568 XXXIA--PFADVDFRSNLLEGPIPL-PIVEIELLDLSNNHFSGPIPQNISGSMPNLIFLS 624
                        +D  SN+ + P PL P+V +  L  SNN FSG IP+ I   + NL  L 
Sbjct:   320 DVIQGGRELLVLDISSNIFQDPFPLLPVVSMNYLFSSNNRFSGEIPKTIC-ELDNLRILV 378

Query:   625 VSGNRLTGKIPGSIGEMQLLQVIDLSRNXXXXXXXXXXXNCTFLKVLDLSYSSLSGVIPA 684
             +S N  +G IP     + L  V+ L RN               L+  D+ ++  SG +P 
Sbjct:   379 LSNNNFSGSIPRCFENLHLY-VLHL-RNNNLSGIFPEEAISHHLQSFDVGHNLFSGELPK 436

Query:   685 SLGQLTRLQSLHLNNNKLTGNLPSSFQNLTSLETLDLGNNRFSGNIPSLLGN-GFVGLRI 743
             SL   + ++ L++ +N++    PS  + L +L+ L L +N F G I S   +  F  LRI
Sbjct:   437 SLINCSDIEFLNVEDNRINDTFPSWLELLPNLQILVLRSNEFYGPIFSPGDSLSFSRLRI 496

Query:   744 LSLRSNAFSGEIPSKL----SNLSSLQVLDLAENNLTGSIPGSVGDL--KAMAHVQNIVK 797
               +  N F+G +PS      S +SS  V+D+    +  ++ G   D   K++A +   +K
Sbjct:   497 FDISENRFTGVLPSDYFVGWSVMSS--VVDIDGRIIQYTVTGIDRDFYHKSVALINKGLK 554

Query:   798 YLLFGRYRGIYYEENLVINTKGSSKDTPRLFHFIDLSGNNLHGDFPTQLTKLVGLVVLNL 857
               L G    IY        T             ID+SGN L GD P  +  L  ++VL++
Sbjct:   555 MELVGSGFTIY-------KT-------------IDVSGNRLEGDIPESIGLLKEVIVLSM 594

Query:   858 SRNHIGGQIPENISGLHQXXXXXXXXXXXXXXXXXXXXXXXXXXYINLSRNQLSGKIPFE 917
             S N   G IP ++S L                            ++N S N+L G IP  
Sbjct:   595 SNNAFTGHIPPSLSNLSNLQSLDLSQNRLSGSIPGELGKLTFLEWMNFSHNRLEGPIPET 654

Query:   918 GHMTTFDASSFAGNPGLCGDPLPVKCQDDESDKGGNVVEDDNEDEFIDKWFYFSLGL--G 975
               + T D+SSF  NPGLCG PL  KC  +E        ED  E++ +  W   ++G   G
Sbjct:   655 TQIQTQDSSSFTENPGLCGAPLLKKCGGEEEATKQEQDEDKEEEDQVFSWIAAAIGYVPG 714

Query:   976 FAAGIIVPMFIFSIKK 991
                G+ +   + S K+
Sbjct:   715 VVCGLTIGHILVSHKR 730

GO:0005886 "plasma membrane" evidence=ISM

GO:0006952 "defense response" evidence=ISS

GO:0007165 "signal transduction" evidence=IC

GO:0006863 "purine nucleobase transport" evidence=RCA

TAIR|locus:2078102 RLP33 "receptor like protein 33" [Arabidopsis thaliana (taxid:3702)]

 Score = 459 (166.6 bits), Expect = 3.8e-40, P = 3.8e-40
 Identities = 194/741 (26%), Positives = 316/741 (42%)

Query:    56 SWK-GSNCCQWHGISCDDDTGAIVAINLG-NPYHV-VNSDSSGSLLEY------LDLSFN 106
             SW+ GS+CC W GI+CD  TG ++ I+L  +  H   +S+S+ S+L+       LDLS+N
Sbjct:    62 SWENGSDCCHWDGITCDAKTGEVIEIDLMCSCLHGWFHSNSNLSMLQNFHFLTTLDLSYN 121

Query:   107 TFNDIPIPEFLGSLENLQYLNLSEAGFTGVVPSSLGNLHRLQYFDVSAELFALSADSLDW 166
               +   I   +G+L +L  L+LS   F+G +PSSLGNL  L    +    F     S   
Sbjct:   122 HLSG-QISSSIGNLSHLTTLDLSGNNFSGWIPSSLGNLFHLTSLHLYDNNFGGEIPS--- 177

Query:   167 LTGLVSLKHLAMNRVDLS---LVGSEWLGILKNLPNLTELHLSVCGLTGSITSITPVNLT 223
                L +L +L    +DLS    VG E      +L  L+ L L    L+G++  +  +NLT
Sbjct:   178 --SLGNLSYLTF--LDLSTNNFVG-EIPSSFGSLNQLSILRLDNNKLSGNLP-LEVINLT 231

Query:   224 SPAVLDLSLNHFNSLFPNWLVNISTLVYVDLSDCDLYGRIPIGFGELPNLQYLSLAGNNN 283
               + + LS N F    P  + ++S L     S  +  G IP     +P++  + L  NN 
Sbjct:   232 KLSEISLSHNQFTGTLPPNITSLSILESFSASGNNFVGTIPSSLFTIPSITLIFL-DNNQ 290

Query:   284 LSGSCSQLFRGSWKKIQILNFASNKLHGKLPSSVANMTSLTNFDLFDKKVEGGIPSSI-A 342
             LSG+       S   + +L    N L G +P+S++ + +L   DL    ++G +  +I +
Sbjct:   291 LSGTLEFGNISSPSNLLVLQLGGNNLRGPIPTSISRLVNLRTLDLSHFNIQGQVDFNIFS 350

Query:   343 RLCYLKEFDLSGNNLTGS--LPEILQ-----------GTDLCVSSNSPLPSLISMRLGNN 389
              L  L    LS +N T +  L  +L            G  + V++ S +       +G+ 
Sbjct:   351 HLKLLGNLYLSHSNTTTTIDLNAVLSCFKMLISLDLSGNHVLVTNKSSVSDPPLGLIGSL 410

Query:   390 HLKG----KLPEWLSQLENLVELTLSYNLLQGPIPA---SXXXXXXXXXXXXXXXQLNGT 442
             +L G    + P+ L     +  L +S N ++G +P+                   + +  
Sbjct:   411 NLSGCGITEFPDILRTQRQMRTLDISNNKIKGQVPSWLLLQLEYMHISNNNFIGFERSTK 470

Query:   443 LPETLGSLPELSVLDVSSNSLTGIISEIHFSRLSKLKFLGXXXXXXXXXXXXXWIPP--- 499
             L +T+   P +     S+N+ +G I     S L  L  L               IPP   
Sbjct:   471 LEKTVVPKPSMKHFFGSNNNFSGKIPSFICS-LRSLIILDLSNNNFSGA-----IPPCVG 524

Query:   500 -FQ--VQSLNMRSCQLGPSFPSWLKTQQGVSFLDFSNASISGPIPNWFWDIXXXXXXXXX 556
              F+  +  LN+R  +L  S P  +   + +  LD S+  + G +P               
Sbjct:   525 KFKSTLSDLNLRRNRLSGSLPKTII--KSLRSLDVSHNELEGKLPRSLIHFSTLEVLNVE 582

Query:   557 XXXXXXXXXXXXXXIAPFADVDFRSNLLEGPI-PLPIVEIELLDLSNNHFSGPIPQNISG 615
                           +     +  RSN   G I      ++ ++D+S NHF+G +P +   
Sbjct:   583 SNRINDTFPFWLSSLKKLQVLVLRSNAFHGRIHKTRFPKLRIIDISRNHFNGTLPSDCFV 642

Query:   616 SMPNLIFLSVSGNRLTGKIPGSIGEMQLLQVIDLSRNXXXXXXXXXXXNCTFLKVLDLSY 675
                 +  L  + +R   K  GS G      V+ +++                   LD S 
Sbjct:   643 EWTGMHSLEKNEDRFNEKYMGS-GYYHDSMVL-MNKGLEMELVRILK----IYTALDFSG 696

Query:   676 SSLSGVIPASLGQLTRLQSLHLNNNKLTGNLPSSFQNLTSLETLDLGNNRFSGNIPSLLG 735
             +   G IP S+G L  L  L+L++N  TG++PSS  NL  LE+LD+  N+ SG IP  LG
Sbjct:   697 NKFEGEIPRSIGLLKELHILNLSSNGFTGHIPSSMGNLRELESLDVSRNKLSGEIPQELG 756

Query:   736 NGFVGLRILSLRSNAFSGEIP 756
             N    L  ++   N   G++P
Sbjct:   757 N-LSYLAYMNFSHNQLVGQVP 776

GO:0005886 "plasma membrane" evidence=ISM

GO:0006952 "defense response" evidence=ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0007165 "signal transduction" evidence=IC

GO:0009507 "chloroplast" evidence=IDA

GO:0000165 "MAPK cascade" evidence=RCA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=RCA

GO:0006457 "protein folding" evidence=RCA

GO:0006612 "protein targeting to membrane" evidence=RCA

GO:0009408 "response to heat" evidence=RCA

GO:0009617 "response to bacterium" evidence=RCA

GO:0009644 "response to high light intensity" evidence=RCA

GO:0009862 "systemic acquired resistance, salicylic acid mediated signaling pathway" evidence=RCA

GO:0009867 "jasmonic acid mediated signaling pathway" evidence=RCA

GO:0010310 "regulation of hydrogen peroxide metabolic process" evidence=RCA

GO:0010363 "regulation of plant-type hypersensitive response" evidence=RCA

GO:0031348 "negative regulation of defense response" evidence=RCA

GO:0034976 "response to endoplasmic reticulum stress" evidence=RCA

GO:0035304 "regulation of protein dephosphorylation" evidence=RCA

GO:0042542 "response to hydrogen peroxide" evidence=RCA

TAIR|locus:2074633 RLP35 "AT3G11080" [Arabidopsis thaliana (taxid:3702)]

 Score = 465 (168.7 bits), Expect = 1.1e-40, P = 1.1e-40
 Identities = 213/790 (26%), Positives = 331/790 (41%)

Query:    45 NGLEDPESRLASWKG-SNCCQWHGISCDDDTGAIVAINLGNPYHVVNSDSSGSL-----L 98
             N    P     SW+  S+CC W GI+CD  +G ++ ++L   +   +  S+ SL     L
Sbjct:    68 NSRVSPHPTTESWRNNSDCCNWEGITCDTKSGEVIELDLSCSWLYGSFHSNSSLFRLQNL 127

Query:    99 EYLDLSFNTFNDIPIPEFLGSLENLQYLNLSEAGFTGVVPSSLGNLHRLQYFDVSAELFA 158
               LDL+ N   D  IP  +G+L +L  L+LS   F G++PSS+ NL RL    +S+  F+
Sbjct:   128 RVLDLTQNDL-DGEIPSSIGNLSHLTSLHLSYNQFLGLIPSSIENLSRLTSLHLSSNQFS 186

Query:   159 ----LSADSLDWLTGLV------------SLKHLAMNRVDLSLVGSEWLGILK----NLP 198
                  S  +L  LT L             S+ +L+ N   LSL  +++ G +     NL 
Sbjct:   187 GQIPSSIGNLSHLTSLELSSNQFSGQIPSSIGNLS-NLTFLSLPSNDFFGQIPSSIGNLA 245

Query:   199 NLTELHLSVCGLTGSITSITPVNLTSPAVLDLSLNHFNSLFPNWLVNISTLVYVDLSDCD 258
              LT L+LS     G I S    NL    VL +  N  +   P  L+N++ L  + LS   
Sbjct:   246 RLTYLYLSYNNFVGEIPSSFG-NLNQLIVLQVDSNKLSGNVPISLLNLTRLSALLLSHNQ 304

Query:   259 LYGRIPIGFGELPNLQYLSLAGNNNLSGSC-SQLFRGSWKKIQILNFASNKLHGKLP-SS 316
               G IP     L NL     A NN  +G+  S LF  +   +  L+ + N+L+G L   +
Sbjct:   305 FTGTIPNNISLLSNLMDFE-ASNNAFTGTLPSSLF--NIPPLIRLDLSDNQLNGTLHFGN 361

Query:   317 VANMTSLTNFDLFDKKVEGGIPSSIARLCYLKEFDLSGNNLTGSLPEILQGTDLCVSSNS 376
             +++ ++L    +      G IP S++R   L  FDLS  N T   P      D  + S+ 
Sbjct:   362 ISSPSNLQYLIIGSNNFIGTIPRSLSRFVNLTLFDLSHLN-TQCRP-----VDFSIFSH- 414

Query:   377 PLPSLISMRLGN-NHLKGKLPEWLSQLENLVELTLSYNLLQGPIPASXXXXXXXXXXXXX 435
              L SL  +RL         L + L   + L  L +S NL+     +S             
Sbjct:   415 -LKSLDDLRLSYLTTTTIDLNDILPYFKTLRSLDISGNLVSATNKSSVSSDPPSQSIQSL 473

Query:   436 XXQLNGT--LPETLGSLPELSVLDVSSNSLTG-------IISEIHFSRLSKLKFLGXXXX 486
                  G    PE L +  EL  LDVS+N + G        +  + +  LS   F+     
Sbjct:   474 YLSGCGITDFPEILRTQHELGFLDVSNNKIKGQVPGWLWTLPNLFYLNLSNNTFISFESS 533

Query:   487 XXXXXXXXXWIPPFQVQSLNMRSCQLGPSFPSWLKTQQGVSFLDFSNASISGPIPNWFWD 546
                         P  +      +   G   PS++   + ++ LD S  + +G IP     
Sbjct:   534 SKKHGLSSVR-KPSMIHLFASNNNFTG-KIPSFICGLRSLNTLDLSENNYNGSIPRCMEK 591

Query:   547 IXXXXXXXXXXXXXXXXXXXXXXXIAPFADVDFRSNLLEGPIPLPIVE---IELLDLSNN 603
             +                             +D   NLL G +P  ++    +E+L++ +N
Sbjct:   592 LKSTLFVLNLRQNNLSGGLPKHI-FESLRSLDVGHNLLVGKLPRSLIRFSNLEVLNVESN 650

Query:   604 HFSGPIPQNISGSMPNLIFLSVSGNRLTGKIPGSIGEMQLLQVIDLSRNXXXXXX-XXXX 662
               +   P  +S S+  L  L +  N   G I  +      L++ID+S N           
Sbjct:   651 RINDTFPFWLS-SLSKLQVLVLRSNAFHGPIHEAT--FPELRIIDISHNHFNGTLPTEYF 707

Query:   663 XNCTFLKVLDLSYSSLSGVIPASLGQLTRLQSLHLNNNKLTGNLPSSFQNLTSLETLDLG 722
                + +  L  +    +     S G L    S+ L N  L   L    + LT    LD  
Sbjct:   708 VKWSAMSSLGKNEDQSNEKYMGS-G-LYYQDSMVLMNKGLAMEL---VRILTIYTALDFS 762

Query:   723 NNRFSGNIPSLLGNGFVGLRILSLRSNAFSGEIPSKLSNLSSLQVLDLAENNLTGSIPGS 782
              N+F G IP  +G     L +L+L +NAF G IPS + NL++L+ LD+++N LTG IP  
Sbjct:   763 GNKFEGEIPKSIGL-LKELLVLNLSNNAFGGHIPSSMGNLTALESLDVSQNKLTGEIPQE 821

Query:   783 VGDLKAMAHV 792
             +GDL  +A++
Sbjct:   822 LGDLSFLAYM 831

GO:0006952 "defense response" evidence=ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0007165 "signal transduction" evidence=IC

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	1009
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	8e-75
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	1e-66
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	4e-62
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	2e-59
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	7e-20
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	2e-16
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	3e-15
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	8e-15
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	3e-13
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	8e-12
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	2e-11
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	6e-09
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	1e-08
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	4e-08
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	7e-08
pfam08263	42	pfam08263, LRRNT_2, Leucine rich repeat N-terminal	9e-08
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	1e-07
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	3e-07
COG4886	394	COG4886, COG4886, Leucine-rich repeat (LRR) protei	6e-07
COG4886	394	COG4886, COG4886, Leucine-rich repeat (LRR) protei	8e-07
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	4e-06
cd00116	319	cd00116, LRR_RI, Leucine-rich repeats (LRRs), ribo	6e-06
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	7e-06
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	9e-06
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	1e-05
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	4e-05
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	4e-05
cd00116	319	cd00116, LRR_RI, Leucine-rich repeats (LRRs), ribo	6e-05
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	9e-05
COG4886	394	COG4886, COG4886, Leucine-rich repeat (LRR) protei	1e-04
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	2e-04
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	2e-04
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	5e-04
PRK15370	754	PRK15370, PRK15370, E3 ubiquitin-protein ligase Sl	5e-04
cd00116	319	cd00116, LRR_RI, Leucine-rich repeats (LRRs), ribo	6e-04
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	7e-04
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	0.001
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	0.003
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	0.003
cd00116	319	cd00116, LRR_RI, Leucine-rich repeats (LRRs), ribo	0.003

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score =  265 bits (680), Expect = 8e-75
 Identities = 197/624 (31%), Positives = 303/624 (48%), Gaps = 87/624 (13%)

Query: 319 NMTSLTNFDLFDKKVEGGIPSSIARLCYLKEFDLSGNNLTGSLPEILQGTDLCVSSNSPL 378
           N + + + DL  K + G I S+I RL Y++  +LS N L+G +P+     D+  +S+S  
Sbjct: 67  NSSRVVSIDLSGKNISGKISSAIFRLPYIQTINLSNNQLSGPIPD-----DIFTTSSS-- 119

Query: 379 PSLISMRLGNNHLKGKLPEWLSQLENLVELTLSYNLLQGPIPASLGNLKNLTKLNLPGNQ 438
             L  + L NN+  G +P     + NL  L LS N+L G IP  +G+  +L  L+L GN 
Sbjct: 120 --LRYLNLSNNNFTGSIPR--GSIPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNV 175

Query: 439 LNGTLPETLGSLPELSVLDVSSNSLTGIISEIHFSRLSKLKFLGLSSNSFILNVSSSWIP 498
           L G +P +L +L  L  L ++SN L G I      ++  LK++ L  N+      S  IP
Sbjct: 176 LVGKIPNSLTNLTSLEFLTLASNQLVGQIPR-ELGQMKSLKWIYLGYNNL-----SGEIP 229

Query: 499 P--FQVQSLNMRSCQLGPSFPSWLKTQQGVSFLDFSNASISGPIPNWFWDISSKLSLLNV 556
                + SLN                      LD    +++GPIP+   ++   L  L +
Sbjct: 230 YEIGGLTSLN---------------------HLDLVYNNLTGPIPSSLGNLK-NLQYLFL 267

Query: 557 SLNQLQGQLPNPL-NIAPFADVDFRSNLLEGPIPLPIVE---IELLDLSNNHFSGPIPQN 612
             N+L G +P  + ++     +D   N L G IP  +++   +E+L L +N+F+G IP  
Sbjct: 268 YQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIPVA 327

Query: 613 ISGSMPNLIFLSVSGNRLTGKIPGSIGEMQLLQVIDLSRNSISGSISSSIGNCTFLKVLD 672
           ++ S+P L  L +  N+ +G+IP ++G+   L V+DLS N+++G I   + +   L  L 
Sbjct: 328 LT-SLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLI 386

Query: 673 LSYSSLSGVIPASLGQLTRLQSLHLNNNKLTGNLPSSFQNLTSLETLDLGNNRFSGNIPS 732
           L  +SL G IP SLG    L+ + L +N  +G LPS F  L  +  LD+ NN   G I S
Sbjct: 387 LFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGELPSEFTKLPLVYFLDISNNNLQGRINS 446

Query: 733 LLGNGFVGLRILSLRSNAFSGEIPSKLSNLSSLQVLDLAENNLTGSIPGSVGDLKAMAHV 792
              +    L++LSL  N F G +P        L+ LDL+ N  +G++P  +G L  +   
Sbjct: 447 RKWD-MPSLQMLSLARNKFFGGLPD-SFGSKRLENLDLSRNQFSGAVPRKLGSLSELMQ- 503

Query: 793 QNIVKYLLFGRYRGIYYEENLVINTKGSSKDTPRLFHFIDLSGNNLHGDFPTQLTKLVGL 852
                                                 + LS N L G+ P +L+    L
Sbjct: 504 --------------------------------------LKLSENKLSGEIPDELSSCKKL 525

Query: 853 VVLNLSRNHIGGQIPENISGLHQLASLDLSSNNLSGGIPSSLSSLSFLGYINLSRNQLSG 912
           V L+LS N + GQIP + S +  L+ LDLS N LSG IP +L ++  L  +N+S N L G
Sbjct: 526 VSLDLSHNQLSGQIPASFSEMPVLSQLDLSQNQLSGEIPKNLGNVESLVQVNISHNHLHG 585

Query: 913 KIPFEGHMTTFDASSFAGNPGLCG 936
            +P  G     +AS+ AGN  LCG
Sbjct: 586 SLPSTGAFLAINASAVAGNIDLCG 609

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score =  242 bits (618), Expect = 1e-66
 Identities = 191/569 (33%), Positives = 293/569 (51%), Gaps = 44/569 (7%)

Query: 215 TSITPVNLTSPAVLDLSLNHFNSLFPNWLVNISTLVYVDLSDCDLYGRIPIG-FGELPNL 273
             IT  N +    +DLS  + +    + +  +  +  ++LS+  L G IP   F    +L
Sbjct: 61  QGITCNNSSRVVSIDLSGKNISGKISSAIFRLPYIQTINLSNNQLSGPIPDDIFTTSSSL 120

Query: 274 QYLSLAGNNNLSGSCSQLFRGSWKKIQILNFASNKLHGKLPSSVANMTSLTNFDLFDKKV 333
           +YL+L+ NNN +GS     RGS   ++ L+ ++N L G++P+ + + +SL   DL    +
Sbjct: 121 RYLNLS-NNNFTGSIP---RGSIPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVL 176

Query: 334 EGGIPSSIARLCYLKEFDLSGNNLTGSLPEILQGTDLCVSSNSPLPSLISMRLGNNHLKG 393
            G IP+S+  L  L+   L+ N L G +P  L            + SL  + LG N+L G
Sbjct: 177 VGKIPNSLTNLTSLEFLTLASNQLVGQIPREL----------GQMKSLKWIYLGYNNLSG 226

Query: 394 KLPEWLSQLENLVELTLSYNLLQGPIPASLGNLKNLTKLNLPGNQLNGTLPETLGSLPEL 453
           ++P  +  L +L  L L YN L GPIP+SLGNLKNL  L L  N+L+G +P ++ SL +L
Sbjct: 227 EIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKL 286

Query: 454 SVLDVSSNSLTGIISEIHFSRLSKLKFLGLSSNSFI--LNVSSSWIPPFQVQSLNMRSCQ 511
             LD+S NSL+G I E+   +L  L+ L L SN+F   + V+ + +P  QV  L + S +
Sbjct: 287 ISLDLSDNSLSGEIPEL-VIQLQNLEILHLFSNNFTGKIPVALTSLPRLQV--LQLWSNK 343

Query: 512 LGPSFPSWLKTQQGVSFLDFSNASISGPIPNWFWDISSKLSLLNVSLNQLQGQLPNPLNI 571
                P  L     ++ LD S  +++G IP      S  L  L +  N L+G++P  L  
Sbjct: 344 FSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLCS-SGNLFKLILFSNSLEGEIPKSLG- 401

Query: 572 APFADVDFRSNLLEGPIPLPIVEIELLDLSNNHFSGPIPQNISGSMPNLIFLSVSGNRLT 631
                   RS             +  + L +N FSG +P   +  +P + FL +S N L 
Sbjct: 402 ------ACRS-------------LRRVRLQDNSFSGELPSEFT-KLPLVYFLDISNNNLQ 441

Query: 632 GKIPGSIGEMQLLQVIDLSRNSISGSISSSIGNCTFLKVLDLSYSSLSGVIPASLGQLTR 691
           G+I     +M  LQ++ L+RN   G +  S G+   L+ LDLS +  SG +P  LG L+ 
Sbjct: 442 GRINSRKWDMPSLQMLSLARNKFFGGLPDSFGS-KRLENLDLSRNQFSGAVPRKLGSLSE 500

Query: 692 LQSLHLNNNKLTGNLPSSFQNLTSLETLDLGNNRFSGNIPSLLGNGFVGLRILSLRSNAF 751
           L  L L+ NKL+G +P    +   L +LDL +N+ SG IP+        L  L L  N  
Sbjct: 501 LMQLKLSENKLSGEIPDELSSCKKLVSLDLSHNQLSGQIPASFSE-MPVLSQLDLSQNQL 559

Query: 752 SGEIPSKLSNLSSLQVLDLAENNLTGSIP 780
           SGEIP  L N+ SL  ++++ N+L GS+P
Sbjct: 560 SGEIPKNLGNVESLVQVNISHNHLHGSLP 588

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score =  228 bits (583), Expect = 4e-62
 Identities = 204/651 (31%), Positives = 300/651 (46%), Gaps = 105/651 (16%)

Query: 245 NISTLVYVDLSDCDLYGRIPIGFGELPNLQYLSLAGNNNLSGSCSQLFRGSWKKIQILNF 304
           N S +V +DLS  ++ G+I      LP +Q ++L+ NN LSG        +   ++ LN 
Sbjct: 67  NSSRVVSIDLSGKNISGKISSAIFRLPYIQTINLS-NNQLSGPIPDDIFTTSSSLRYLNL 125

Query: 305 ASNKLHGKLPSSVANMTSLTNFDLFDKKVEGGIPSSIARLCYLKEFDLSGNNLTGSLPEI 364
           ++N   G +P    ++ +L   DL +  + G IP+ I     LK  DL GN L G +P  
Sbjct: 126 SNNNFTGSIPR--GSIPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIP-- 181

Query: 365 LQGTDLCVSSNSPLPSLISMRLGNNHLKGKLPEWLSQLENLVELTLSYNLLQGPIPASLG 424
                   +S + L SL  + L +N L G++P  L Q+++L  + L YN L G IP  +G
Sbjct: 182 --------NSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIG 233

Query: 425 NLKNLTKLNLPGNQLNGTLPETLGSLPELSVLDVSSNSLTGIISEIHFSRLSKLKFLGLS 484
            L +L  L+L  N L G +P +LG+L  L  L +  N L+G I    FS L KL  L LS
Sbjct: 234 GLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFS-LQKLISLDLS 292

Query: 485 SNSFILNVSSSWIPPFQVQSLNMRSCQLGPSFPSWLKTQQGVSFLDFSNASISGPIPNWF 544
            NS      S  IP   +Q  N+    L                  FSN + +G IP   
Sbjct: 293 DNSL-----SGEIPELVIQLQNLEILHL------------------FSN-NFTGKIPVAL 328

Query: 545 WDISSKLSLLNVSLNQLQGQLPNPLNIAPFADVDFRSNLLEGPIPLPIVEIELLDLSNNH 604
             +  +L +L +  N+  G++P         ++   +NL             +LDLS N+
Sbjct: 329 TSLP-RLQVLQLWSNKFSGEIP--------KNLGKHNNL------------TVLDLSTNN 367

Query: 605 FSGPIPQNI--SGSMPNLIFLSVSGNRLTGKIPGSIGEMQLLQVIDLSRNSISGSISSSI 662
            +G IP+ +  SG++  LI  S   N L G+IP S+G  + L+ + L  NS SG + S  
Sbjct: 368 LTGEIPEGLCSSGNLFKLILFS---NSLEGEIPKSLGACRSLRRVRLQDNSFSGELPSEF 424

Query: 663 GNCTFLKVLDLSYSSLSGVIPASLGQLTRLQSLHLNNNKLTGNLPSSFQNLTSLETLDLG 722
                +  LD+S ++L G I +    +  LQ L L  NK  G LP SF +   LE LDL 
Sbjct: 425 TKLPLVYFLDISNNNLQGRINSRKWDMPSLQMLSLARNKFFGGLPDSFGS-KRLENLDLS 483

Query: 723 NNRFSGNIPSLLGNGFVGLRILSLRSNAFSGEIPSKLSNLSSLQVLDLAENNLTGSIPGS 782
            N+FSG +P  LG+    L  L L  N  SGEIP +LS+   L  LDL+ N L+G IP S
Sbjct: 484 RNQFSGAVPRKLGS-LSELMQLKLSENKLSGEIPDELSSCKKLVSLDLSHNQLSGQIPAS 542

Query: 783 VGDLKAMAHVQNIVKYLLFGRYRGIYYEENLVINTKGSSKDTPRLFHFIDLSGNNLHGDF 842
             ++  ++                                        +DLS N L G+ 
Sbjct: 543 FSEMPVLSQ---------------------------------------LDLSQNQLSGEI 563

Query: 843 PTQLTKLVGLVVLNLSRNHIGGQIPENISGLHQLASLDLSSNNLSGGIPSS 893
           P  L  +  LV +N+S NH+ G +P   + L   AS    + +L GG  +S
Sbjct: 564 PKNLGNVESLVQVNISHNHLHGSLPSTGAFLAINASAVAGNIDLCGGDTTS 614

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score =  220 bits (563), Expect = 2e-59
 Identities = 211/728 (28%), Positives = 311/728 (42%), Gaps = 169/728 (23%)

Query: 29  FSNCSENDLDALIDFKNGLEDPESRLASWKGSN-CCQWHGISCDDDT------------- 74
           FS     +L+ L+ FK+ + DP   L++W  S   C W GI+C++ +             
Sbjct: 23  FSMLHAEELELLLSFKSSINDPLKYLSNWNSSADVCLWQGITCNNSSRVVSIDLSGKNIS 82

Query: 75  GAIVAINLGNPY----HVVNSDSSGSL----------LEYLDLSFNTFNDIPIPEFLGSL 120
           G I +     PY    ++ N+  SG +          L YL+LS N F    IP   GS+
Sbjct: 83  GKISSAIFRLPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNNNFTG-SIPR--GSI 139

Query: 121 ENLQYLNLSEAGFTGVVPSSLGNLHRLQYFDVSAELFALSADSLDWLTGLVSLKHLAMNR 180
            NL+ L+LS    +G +P+ +G+   L+  D+   +          L G +         
Sbjct: 140 PNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNV----------LVGKIP-------- 181

Query: 181 VDLSLVGSEWLGILKNLPNLTELHLSVCGLTGSITSITPVNLTSPAVLDLSLNHFNSLFP 240
                                           S+T++     TS   L L+ N      P
Sbjct: 182 -------------------------------NSLTNL-----TSLEFLTLASNQLVGQIP 205

Query: 241 NWLVNISTLVYVDLSDCDLYGRIPIGFGELPNLQYLSLAGNNNLSGSCSQLFRGSWKKIQ 300
             L  + +L ++ L   +L G IP   G L +L +L L  NN                  
Sbjct: 206 RELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNN------------------ 247

Query: 301 ILNFASNKLHGKLPSSVANMTSLTNFDLFDKKVEGGIPSSIARLCYLKEFDLSGNNLTGS 360
                   L G +PSS+ N+ +L    L+  K+ G IP SI  L  L   DLS N+L+G 
Sbjct: 248 --------LTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGE 299

Query: 361 LPEILQGTDLCVSSNSPLPSLISMRLGNNHLKGKLPEWLSQLENLVELTLSYNLLQGPIP 420
           +PE++            L +L  + L +N+  GK+P  L+ L  L  L L  N   G IP
Sbjct: 300 IPELV----------IQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIP 349

Query: 421 ASLGNLKNLTKLNLPGNQLNGTLPETLGSLPELSVLDVSSNSLTGIISEIHFSRLSKLKF 480
            +LG   NLT L+L  N L G +PE L S   L  L + SNSL G I +        L+ 
Sbjct: 350 KNLGKHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPK-SLGACRSLRR 408

Query: 481 LGLSSNSFILNVSSSWIPPFQVQSLNMRSCQLGPSFPSWLKTQQGVSFLDFSNASISGPI 540
           + L  NSF                    S +L    PS       V FLD SN ++ G I
Sbjct: 409 VRLQDNSF--------------------SGEL----PSEFTKLPLVYFLDISNNNLQGRI 444

Query: 541 PNWFWDISSKLSLLNVSLNQLQGQLPNPLNIAPFADVDFRSNLLEGPIPLPIVEIELLDL 600
            +  WD+ S L +L+++ N+  G LP+           F S  LE            LDL
Sbjct: 445 NSRKWDMPS-LQMLSLARNKFFGGLPD----------SFGSKRLEN-----------LDL 482

Query: 601 SNNHFSGPIPQNISGSMPNLIFLSVSGNRLTGKIPGSIGEMQLLQVIDLSRNSISGSISS 660
           S N FSG +P+ + GS+  L+ L +S N+L+G+IP  +   + L  +DLS N +SG I +
Sbjct: 483 SRNQFSGAVPRKL-GSLSELMQLKLSENKLSGEIPDELSSCKKLVSLDLSHNQLSGQIPA 541

Query: 661 SIGNCTFLKVLDLSYSSLSGVIPASLGQLTRLQSLHLNNNKLTGNLPSSFQNLTSLETLD 720
           S      L  LDLS + LSG IP +LG +  L  +++++N L G+LPS+   L    +  
Sbjct: 542 SFSEMPVLSQLDLSQNQLSGEIPKNLGNVESLVQVNISHNHLHGSLPSTGAFLAINASAV 601

Query: 721 LGNNRFSG 728
            GN    G
Sbjct: 602 AGNIDLCG 609

Length = 968

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 94.5 bits (235), Expect = 7e-20
 Identities = 44/87 (50%), Positives = 61/87 (70%)

Query: 623 LSVSGNRLTGKIPGSIGEMQLLQVIDLSRNSISGSISSSIGNCTFLKVLDLSYSSLSGVI 682
           L +    L G IP  I +++ LQ I+LS NSI G+I  S+G+ T L+VLDLSY+S +G I
Sbjct: 423 LGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSI 482

Query: 683 PASLGQLTRLQSLHLNNNKLTGNLPSS 709
           P SLGQLT L+ L+LN N L+G +P++
Sbjct: 483 PESLGQLTSLRILNLNGNSLSGRVPAA 509

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 84.1 bits (208), Expect = 2e-16
 Identities = 41/93 (44%), Positives = 57/93 (61%), Gaps = 1/93 (1%)

Query: 667 FLKVLDLSYSSLSGVIPASLGQLTRLQSLHLNNNKLTGNLPSSFQNLTSLETLDLGNNRF 726
           F+  L L    L G IP  + +L  LQS++L+ N + GN+P S  ++TSLE LDL  N F
Sbjct: 419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSF 478

Query: 727 SGNIPSLLGNGFVGLRILSLRSNAFSGEIPSKL 759
           +G+IP  LG     LRIL+L  N+ SG +P+ L
Sbjct: 479 NGSIPESLGQ-LTSLRILNLNGNSLSGRVPAAL 510

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 80.2 bits (198), Expect = 3e-15
 Identities = 45/107 (42%), Positives = 69/107 (64%), Gaps = 2/107 (1%)

Query: 595 IELLDLSNNHFSGPIPQNISGSMPNLIFLSVSGNRLTGKIPGSIGEMQLLQVIDLSRNSI 654
           I+ L L N    G IP +IS  + +L  +++SGN + G IP S+G +  L+V+DLS NS 
Sbjct: 420 IDGLGLDNQGLRGFIPNDIS-KLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSF 478

Query: 655 SGSISSSIGNCTFLKVLDLSYSSLSGVIPASLG-QLTRLQSLHLNNN 700
           +GSI  S+G  T L++L+L+ +SLSG +PA+LG +L    S +  +N
Sbjct: 479 NGSIPESLGQLTSLRILNLNGNSLSGRVPAALGGRLLHRASFNFTDN 525

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 78.3 bits (193), Expect = 8e-15
 Identities = 44/113 (38%), Positives = 60/113 (53%), Gaps = 8/113 (7%)

Query: 831 IDLSGNNLHGDFPTQLTKLVGLVVLNLSRNHIGGQIPENISGLHQLASLDLSSNNLSGGI 890
           + L    L G  P  ++KL  L  +NLS N I G IP ++  +  L  LDLS N+ +G I
Sbjct: 423 LGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSI 482

Query: 891 PSSLSSLSFLGYINLSRNQLSGKIPFEG-----HMTTFDASSFAGNPGLCGDP 938
           P SL  L+ L  +NL+ N LSG++P        H  +F+   F  N GLCG P
Sbjct: 483 PESLGQLTSLRILNLNGNSLSGRVPAALGGRLLHRASFN---FTDNAGLCGIP 532

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 73.7 bits (181), Expect = 3e-13
 Identities = 34/80 (42%), Positives = 54/80 (67%)

Query: 386 LGNNHLKGKLPEWLSQLENLVELTLSYNLLQGPIPASLGNLKNLTKLNLPGNQLNGTLPE 445
           L N  L+G +P  +S+L +L  + LS N ++G IP SLG++ +L  L+L  N  NG++PE
Sbjct: 425 LDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPE 484

Query: 446 TLGSLPELSVLDVSSNSLTG 465
           +LG L  L +L+++ NSL+G
Sbjct: 485 SLGQLTSLRILNLNGNSLSG 504

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 69.1 bits (169), Expect = 8e-12
 Identities = 34/89 (38%), Positives = 50/89 (56%)

Query: 647 IDLSRNSISGSISSSIGNCTFLKVLDLSYSSLSGVIPASLGQLTRLQSLHLNNNKLTGNL 706
           + L    + G I + I     L+ ++LS +S+ G IP SLG +T L+ L L+ N   G++
Sbjct: 423 LGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSI 482

Query: 707 PSSFQNLTSLETLDLGNNRFSGNIPSLLG 735
           P S   LTSL  L+L  N  SG +P+ LG
Sbjct: 483 PESLGQLTSLRILNLNGNSLSGRVPAALG 511

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 67.9 bits (166), Expect = 2e-11
 Identities = 33/76 (43%), Positives = 42/76 (55%)

Query: 376 SPLPSLISMRLGNNHLKGKLPEWLSQLENLVELTLSYNLLQGPIPASLGNLKNLTKLNLP 435
           S L  L S+ L  N ++G +P  L  + +L  L LSYN   G IP SLG L +L  LNL 
Sbjct: 439 SKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLN 498

Query: 436 GNQLNGTLPETLGSLP 451
           GN L+G +P  LG   
Sbjct: 499 GNSLSGRVPAALGGRL 514

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 59.8 bits (145), Expect = 6e-09
 Identities = 29/100 (29%), Positives = 51/100 (51%), Gaps = 5/100 (5%)

Query: 297 KKIQILNFASNKLHGKLPSSVANMTSLTNFDLFDKKVEGGIPSSIARLCYLKEFDLSGNN 356
           + +Q +N + N + G +P S+ ++TSL   DL      G IP S+ +L  L+  +L+GN+
Sbjct: 442 RHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGNS 501

Query: 357 LTGSLP-----EILQGTDLCVSSNSPLPSLISMRLGNNHL 391
           L+G +P      +L       + N+ L  +  +R    HL
Sbjct: 502 LSGRVPAALGGRLLHRASFNFTDNAGLCGIPGLRACGPHL 541

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 58.3 bits (141), Expect = 1e-08
 Identities = 31/73 (42%), Positives = 45/73 (61%), Gaps = 1/73 (1%)

Query: 415 LQGPIPASLGNLKNLTKLNLPGNQLNGTLPETLGSLPELSVLDVSSNSLTGIISEIHFSR 474
           L+G IP  +  L++L  +NL GN + G +P +LGS+  L VLD+S NS  G I E    +
Sbjct: 430 LRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPE-SLGQ 488

Query: 475 LSKLKFLGLSSNS 487
           L+ L+ L L+ NS
Sbjct: 489 LTSLRILNLNGNS 501

Length = 623

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 50.2 bits (121), Expect = 4e-08
 Identities = 23/59 (38%), Positives = 31/59 (52%)

Query: 668 LKVLDLSYSSLSGVIPASLGQLTRLQSLHLNNNKLTGNLPSSFQNLTSLETLDLGNNRF 726
           LK LDLS + L+ +   +   L  L+ L L+ N LT   P +F  L SL +LDL  N  
Sbjct: 2   LKSLDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGNNL 60

Length = 60

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 56.0 bits (135), Expect = 7e-08
 Identities = 40/133 (30%), Positives = 64/133 (48%), Gaps = 31/133 (23%)

Query: 509 SCQLGPSFPSWLKTQQGVSFLDFSNASISGPIPNWFWDISS--KLSLLNVSLNQLQGQLP 566
            CQ   +   W      +  L   N  + G IPN   DIS    L  +N+S N ++G +P
Sbjct: 408 DCQFDSTKGKWF-----IDGLGLDNQGLRGFIPN---DISKLRHLQSINLSGNSIRGNIP 459

Query: 567 NPLNIAPFADVDFRSNLLEGPIPLPIVEIELLDLSNNHFSGPIPQNISGSMPNLIFLSVS 626
             L                G I      +E+LDLS N F+G IP+++ G + +L  L+++
Sbjct: 460 PSL----------------GSIT----SLEVLDLSYNSFNGSIPESL-GQLTSLRILNLN 498

Query: 627 GNRLTGKIPGSIG 639
           GN L+G++P ++G
Sbjct: 499 GNSLSGRVPAALG 511

Length = 623

>gnl|CDD|219766 pfam08263, LRRNT_2, Leucine rich repeat N-terminal domain

 Score = 48.9 bits (117), Expect = 9e-08
 Identities = 18/42 (42%), Positives = 25/42 (59%), Gaps = 3/42 (7%)

Query: 33 SENDLDALIDFKNGL-EDPESRLASWKGS--NCCQWHGISCD 71
            +D DAL+ FK+ L  DP   L+SW  S  + C W G++CD
Sbjct: 1  LNDDRDALLAFKSSLNGDPSGALSSWNPSSSDPCSWTGVTCD 42

Leucine Rich Repeats pfam00560 are short sequence motifs present in a number of proteins with diverse functions and cellular locations. Leucine Rich Repeats are often flanked by cysteine rich domains. This domain is often found at the N-terminus of tandem leucine rich repeats. Length = 42

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 55.2 bits (133), Expect = 1e-07
 Identities = 30/95 (31%), Positives = 46/95 (48%), Gaps = 25/95 (26%)

Query: 695 LHLNNNKLTGNLPSSFQNLTSLETLDLGNNRFSGNIPSLLGNGFVGLRILSLRSNAFSGE 754
           L L+N  L G +P+    L  L++++L  N   GNIP  LG+                  
Sbjct: 423 LGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGS------------------ 464

Query: 755 IPSKLSNLSSLQVLDLAENNLTGSIPGSVGDLKAM 789
                  ++SL+VLDL+ N+  GSIP S+G L ++
Sbjct: 465 -------ITSLEVLDLSYNSFNGSIPESLGQLTSL 492

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 54.1 bits (130), Expect = 3e-07
 Identities = 49/149 (32%), Positives = 62/149 (41%), Gaps = 40/149 (26%)

Query: 35  NDLDALIDFKNGLEDPESRLASWKGSNCCQ----WHGISC--DDDTGAIV---------- 78
            ++ AL   K+ L  P  R   W G  C      W G  C  D   G             
Sbjct: 372 EEVSALQTLKSSLGLP-LRFG-WNGDPCVPQQHPWSGADCQFDSTKGKWFIDGLGLDNQG 429

Query: 79  ----------------AINL-GNPYHVVNSDSSGSL--LEYLDLSFNTFNDIPIPEFLGS 119
                           +INL GN        S GS+  LE LDLS+N+FN   IPE LG 
Sbjct: 430 LRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGS-IPESLGQ 488

Query: 120 LENLQYLNLSEAGFTGVVPSSLGN--LHR 146
           L +L+ LNL+    +G VP++LG   LHR
Sbjct: 489 LTSLRILNLNGNSLSGRVPAALGGRLLHR 517

Length = 623

>gnl|CDD|227223 COG4886, COG4886, Leucine-rich repeat (LRR) protein [Function unknown]

 Score = 52.7 bits (126), Expect = 6e-07
 Identities = 52/166 (31%), Positives = 87/166 (52%), Gaps = 7/166 (4%)

Query: 598 LDLSNNHFSGPIPQNISGSMPNLIFLSVSGNRLTGKIPGSIGEMQLLQVIDLSRNSISGS 657
           LDLS N  S      +  ++ NL  L +SGN+++  +P  I  +  L+ +DLS NSI   
Sbjct: 168 LDLSFNDLS--DLPKLLSNLSNLNNLDLSGNKIS-DLPPEIELLSALEELDLSNNSII-E 223

Query: 658 ISSSIGNCTFLKVLDLSYSSLSGVIPASLGQLTRLQSLHLNNNKLTGNLPSSFQNLTSLE 717
           + SS+ N   L  L+LS ++    +P S+G L+ L++L L+NN+++    SS  +LT+L 
Sbjct: 224 LLSSLSNLKNLSGLELS-NNKLEDLPESIGNLSNLETLDLSNNQISS--ISSLGSLTNLR 280

Query: 718 TLDLGNNRFSGNIPSLLGNGFVGLRILSLRSNAFSGEIPSKLSNLS 763
            LDL  N  S  +P +     +   +L+L     + E+      L+
Sbjct: 281 ELDLSGNSLSNALPLIALLLLLLELLLNLLLTLKALELKLNSILLN 326

Length = 394

>gnl|CDD|227223 COG4886, COG4886, Leucine-rich repeat (LRR) protein [Function unknown]

 Score = 52.3 bits (125), Expect = 8e-07
 Identities = 82/292 (28%), Positives = 127/292 (43%), Gaps = 45/292 (15%)

Query: 189 EWLGILKNLPNLTELHLSVCGLTGSITSITPVNLTSPAVLDLSLNHFNSLFPNWLVNIST 248
           +    L NL  L  L L++  L  +I+ +  + LT+   LDL  N+   + P   +  S 
Sbjct: 84  DGSENLLNLLPLPSLDLNLNRLRSNISEL--LELTNLTSLDLDNNNITDIPPLIGLLKSN 141

Query: 249 LVYVDLSDCDLYGRIPIGFGELPNLQYLSLAGNNNLSGSCSQLFRGSWKKIQILNFASNK 308
           L  +DLSD  +   +P     LPNL+ L L+ N+                          
Sbjct: 142 LKELDLSDNKI-ESLPSPLRNLPNLKNLDLSFNDLSD----------------------- 177

Query: 309 LHGKLPSSVANMTSLTNFDLFDKKVEGGIPSSIARLCYLKEFDLSGNNLTGSLPEILQGT 368
               LP  ++N+++L N DL   K+   +P  I  L  L+E DLS N++   L  +    
Sbjct: 178 ----LPKLLSNLSNLNNLDLSGNKISD-LPPEIELLSALEELDLSNNSIIELLSSL---- 228

Query: 369 DLCVSSNSPLPSLISMRLGNNHLKGKLPEWLSQLENLVELTLSYNLLQGPIPASLGNLKN 428
                  S L +L  + L NN L+  LPE +  L NL  L LS N +     +SLG+L N
Sbjct: 229 -------SNLKNLSGLELSNNKLE-DLPESIGNLSNLETLDLSNNQIS--SISSLGSLTN 278

Query: 429 LTKLNLPGNQLNGTLPETLGSLPELSVLDVSSNSLTGIISEIHFSRLSKLKF 480
           L +L+L GN L+  LP     L  L +L     +L  +  +++   L+    
Sbjct: 279 LRELDLSGNSLSNALPLIALLLLLLELLLNLLLTLKALELKLNSILLNNNIL 330

Length = 394

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 50.6 bits (121), Expect = 4e-06
 Identities = 29/98 (29%), Positives = 46/98 (46%), Gaps = 10/98 (10%)

Query: 299 IQILNFASNKLHGKLPSSVANMTSLTNFDLFDKKVEGGIPSSIARLCYLKEFDLSGNNLT 358
           I  L   +  L G +P+ ++ +  L + +L    + G IP S+  +  L+  DLS N+  
Sbjct: 420 IDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFN 479

Query: 359 GSLPEILQGTDLCVSSNSPLPSLISMRLGNNHLKGKLP 396
           GS+PE L            L SL  + L  N L G++P
Sbjct: 480 GSIPESL----------GQLTSLRILNLNGNSLSGRVP 507

Length = 623

>gnl|CDD|238064 cd00116, LRR_RI, Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

 Score = 48.9 bits (117), Expect = 6e-06
 Identities = 66/247 (26%), Positives = 92/247 (37%), Gaps = 34/247 (13%)

Query: 269 ELPNLQYLSLAGNNNLSGSCSQLFRG--SWKKIQILNFASNKLHGKLPSSVA-------N 319
           +L  LQ L L GN     +   L         ++ L  + N+  G++P  +         
Sbjct: 21  KLLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNE-TGRIPRGLQSLLQGLTK 79

Query: 320 MTSLTNFDLFDKKVEGGIPSSIARL---CYLKEFDLSGNNLTGSLPEILQGTDLCVSSNS 376
              L   DL D  +       +  L     L+E  L+ NN  G     L    L      
Sbjct: 80  GCGLQELDLSDNALGPDGCGVLESLLRSSSLQELKLN-NNGLGDRGLRLLAKGLK----D 134

Query: 377 PLPSLISMRLGNNHLKGK----LPEWLSQLENLVELTLSYNLLQGP-IPA---SLGNLKN 428
             P+L  + LG N L+G     L + L    +L EL L+ N +    I A    L    N
Sbjct: 135 LPPALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGDAGIRALAEGLKANCN 194

Query: 429 LTKLNLPGNQLN----GTLPETLGSLPELSVLDVSSNSLT-GIISEIH---FSRLSKLKF 480
           L  L+L  N L       L ETL SL  L VL++  N+LT    + +     S    L  
Sbjct: 195 LEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLTDAGAAALASALLSPNISLLT 254

Query: 481 LGLSSNS 487
           L LS N 
Sbjct: 255 LSLSCND 261

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1). Length = 319

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 44.1 bits (105), Expect = 7e-06
 Identities = 26/61 (42%), Positives = 32/61 (52%), Gaps = 1/61 (1%)

Query: 428 NLTKLNLPGNQLNGTLPETLGSLPELSVLDVSSNSLTGIISEIHFSRLSKLKFLGLSSNS 487
           NL  L+L  N+L          LP L VLD+S N+LT  IS   FS L  L+ L LS N+
Sbjct: 1   NLKSLDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLT-SISPEAFSGLPSLRSLDLSGNN 59

Query: 488 F 488
            
Sbjct: 60  L 60

Length = 60

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 43.7 bits (104), Expect = 9e-06
 Identities = 21/59 (35%), Positives = 33/59 (55%)

Query: 644 LQVIDLSRNSISGSISSSIGNCTFLKVLDLSYSSLSGVIPASLGQLTRLQSLHLNNNKL 702
           L+ +DLS N ++     +      LKVLDLS ++L+ + P +   L  L+SL L+ N L
Sbjct: 2   LKSLDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGNNL 60

Length = 60

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 43.3 bits (103), Expect = 1e-05
 Identities = 22/60 (36%), Positives = 27/60 (45%)

Query: 380 SLISMRLGNNHLKGKLPEWLSQLENLVELTLSYNLLQGPIPASLGNLKNLTKLNLPGNQL 439
           +L S+ L NN L          L NL  L LS N L    P +   L +L  L+L GN L
Sbjct: 1   NLKSLDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGNNL 60

Length = 60

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 42.1 bits (100), Expect = 4e-05
 Identities = 24/62 (38%), Positives = 33/62 (53%), Gaps = 7/62 (11%)

Query: 691 RLQSLHLNNNKLTGNLPSSFQNLTSLETLDLGNNRFSGNIPSLLGNGFVG---LRILSLR 747
            L+SL L+NN+LT     +F+ L +L+ LDL  N    N+ S+    F G   LR L L 
Sbjct: 1   NLKSLDLSNNRLTVIPDGAFKGLPNLKVLDLSGN----NLTSISPEAFSGLPSLRSLDLS 56

Query: 748 SN 749
            N
Sbjct: 57  GN 58

Length = 60

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 41.8 bits (99), Expect = 4e-05
 Identities = 23/60 (38%), Positives = 29/60 (48%)

Query: 851 GLVVLNLSRNHIGGQIPENISGLHQLASLDLSSNNLSGGIPSSLSSLSFLGYINLSRNQL 910
            L  L+LS N +         GL  L  LDLS NNL+   P + S L  L  ++LS N L
Sbjct: 1   NLKSLDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGNNL 60

Length = 60

>gnl|CDD|238064 cd00116, LRR_RI, Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

 Score = 45.8 bits (109), Expect = 6e-05
 Identities = 49/234 (20%), Positives = 80/234 (34%), Gaps = 39/234 (16%)

Query: 680 GVIPASLGQLTRLQSLHLNNNKLTGNLPSSFQNLT---SLETLDLGNNRFSGNIPSLLGN 736
             +   L +   LQ L L++N L  +     ++L    SL+ L L NN        LL  
Sbjct: 71  QSLLQGLTKGCGLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAK 130

Query: 737 GF--VGLRILSL------RSNAFSGEIPSKLSNLSSLQVLDLAENNLTGSIPGSVGDLKA 788
           G   +   +  L         A    +   L     L+ L+LA N +     G     + 
Sbjct: 131 GLKDLPPALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGD--AGIRALAEG 188

Query: 789 MAHVQNIVKYLLFGRYRGIYYEENLVINTKGSSK-----DTPRLFHFIDLSGNNLHGDFP 843
           +    N+    L           N  +  +G+S       + +    ++L  NNL  D  
Sbjct: 189 LKANCNLEVLDL----------NNNGLTDEGASALAETLASLKSLEVLNLGDNNL-TDAG 237

Query: 844 TQ------LTKLVGLVVLNLSRNHIG----GQIPENISGLHQLASLDLSSNNLS 887
                   L+  + L+ L+LS N I       + E ++    L  LDL  N   
Sbjct: 238 AAALASALLSPNISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGNKFG 291

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1). Length = 319

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 46.0 bits (109), Expect = 9e-05
 Identities = 32/123 (26%), Positives = 63/123 (51%), Gaps = 8/123 (6%)

Query: 234 HFNSLFPNWLVNISTLVYVDLSDCDLYGRIPIGFGELPNLQYLSLAGNNNLSGSCSQLFR 293
            F+S    W ++      + L +  L G IP    +L +LQ ++L+GN+ + G+      
Sbjct: 410 QFDSTKGKWFID-----GLGLDNQGLRGFIPNDISKLRHLQSINLSGNS-IRGNIPPSL- 462

Query: 294 GSWKKIQILNFASNKLHGKLPSSVANMTSLTNFDLFDKKVEGGIPSSI-ARLCYLKEFDL 352
           GS   +++L+ + N  +G +P S+  +TSL   +L    + G +P+++  RL +   F+ 
Sbjct: 463 GSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGNSLSGRVPAALGGRLLHRASFNF 522

Query: 353 SGN 355
           + N
Sbjct: 523 TDN 525

Length = 623

>gnl|CDD|227223 COG4886, COG4886, Leucine-rich repeat (LRR) protein [Function unknown]

 Score = 45.3 bits (107), Expect = 1e-04
 Identities = 75/259 (28%), Positives = 115/259 (44%), Gaps = 25/259 (9%)

Query: 689 LTRLQSLHLNNNKLTGNL--PSSFQNLTSLETLDLGNNRFSGNIPSLLGNGFVGLRILSL 746
           L+RL SL L +     +L    +  NL  L +LDL  NR   NI  LL      L  L L
Sbjct: 66  LSRLLSLDLLSPSGISSLDGSENLLNLLPLPSLDLNLNRLRSNISELLELTN--LTSLDL 123

Query: 747 RSNAFSGEIPSKLSNLSSLQVLDLAENNLTGSIPGSVGDLKAMAHVQNIVKYLLFGRYRG 806
            +N  +   P      S+L+ LDL++N +  S+P  + +L  + ++      L F     
Sbjct: 124 DNNNITDIPPLIGLLKSNLKELDLSDNKIE-SLPSPLRNLPNLKNL-----DLSFNDLSD 177

Query: 807 IYYEENLVINTKGSSKDTPRLFHFIDLSGNNLHGDFPTQLTKLVGLVVLNLSRNHIGGQI 866
           +    + + N              +DLSGN +  D P ++  L  L  L+LS N I  ++
Sbjct: 178 LPKLLSNLSNLN-----------NLDLSGNKIS-DLPPEIELLSALEELDLSNNSI-IEL 224

Query: 867 PENISGLHQLASLDLSSNNLSGGIPSSLSSLSFLGYINLSRNQLSGKIPFEGHMTTFDAS 926
             ++S L  L+ L+L SNN    +P S+ +LS L  ++LS NQ+S  I   G +T     
Sbjct: 225 LSSLSNLKNLSGLEL-SNNKLEDLPESIGNLSNLETLDLSNNQIS-SISSLGSLTNLREL 282

Query: 927 SFAGNPGLCGDPLPVKCQD 945
             +GN      PL      
Sbjct: 283 DLSGNSLSNALPLIALLLL 301

Length = 394

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 39.8 bits (94), Expect = 2e-04
 Identities = 25/60 (41%), Positives = 29/60 (48%)

Query: 404 NLVELTLSYNLLQGPIPASLGNLKNLTKLNLPGNQLNGTLPETLGSLPELSVLDVSSNSL 463
           NL  L LS N L      +   L NL  L+L GN L    PE    LP L  LD+S N+L
Sbjct: 1   NLKSLDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGNNL 60

Length = 60

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 39.4 bits (93), Expect = 2e-04
 Identities = 26/58 (44%), Positives = 30/58 (51%)

Query: 829 HFIDLSGNNLHGDFPTQLTKLVGLVVLNLSRNHIGGQIPENISGLHQLASLDLSSNNL 886
             +DLS N L          L  L VL+LS N++    PE  SGL  L SLDLS NNL
Sbjct: 3   KSLDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGNNL 60

Length = 60

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 43.7 bits (103), Expect = 5e-04
 Identities = 25/90 (27%), Positives = 44/90 (48%), Gaps = 2/90 (2%)

Query: 228 LDLSLNHFNSLFPNWLVNISTLVYVDLSDCDLYGRIPIGFGELPNLQYLSLAGNNNLSGS 287
           L L         PN +  +  L  ++LS   + G IP   G + +L+ L L+  N+ +GS
Sbjct: 423 LGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLS-YNSFNGS 481

Query: 288 CSQLFRGSWKKIQILNFASNKLHGKLPSSV 317
             +   G    ++ILN   N L G++P+++
Sbjct: 482 IPESL-GQLTSLRILNLNGNSLSGRVPAAL 510

Length = 623

>gnl|CDD|185268 PRK15370, PRK15370, E3 ubiquitin-protein ligase SlrP; Provisional

 Score = 43.5 bits (102), Expect = 5e-04
 Identities = 54/191 (28%), Positives = 90/191 (47%), Gaps = 26/191 (13%)

Query: 588 IPLPIVE-IELLDLSNNHFSGPIPQNISGSMPNLIFLSVSGNRLTGKIPGSIGEMQLLQV 646
           IP  I E I  L L NN     +P+N+ G++  L   S     +   +P +I EM     
Sbjct: 193 IPACIPEQITTLILDNNELKS-LPENLQGNIKTLYANSNQLTSIPATLPDTIQEM----- 246

Query: 647 IDLSRNSISGSISSSIGNCTFLKVLDLSYSSLSGVIPASLGQLTRLQSLHLNN-NKLTGN 705
            +LS N I+  +   + +   L+ LDL ++ +S  +P +L +  R  S++ N+   L  +
Sbjct: 247 -ELSINRIT-ELPERLPSA--LQSLDLFHNKIS-CLPENLPEELRYLSVYDNSIRTLPAH 301

Query: 706 LPSSFQNLTSLETLDLGNNRFSGNIPSLLGNGFVGLRILSLRSNAFSGEIPSKLSNLSSL 765
           LPS   +L          N  S ++ +L      GL+ L    NA +  +P+ L     L
Sbjct: 302 LPSGITHL----------NVQSNSLTALPETLPPGLKTLEAGENALTS-LPASLP--PEL 348

Query: 766 QVLDLAENNLT 776
           QVLD+++N +T
Sbjct: 349 QVLDVSKNQIT 359

Length = 754

>gnl|CDD|238064 cd00116, LRR_RI, Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

 Score = 42.7 bits (101), Expect = 6e-04
 Identities = 65/288 (22%), Positives = 95/288 (32%), Gaps = 64/288 (22%)

Query: 183 LSLVGSEWLGILKNLPNLTELHLSVCGLTGSITSITPVNLTSP---AVLDLSLNHFNSLF 239
             L       +L  L  L  L L    L           L        L LSLN    + 
Sbjct: 8   ELLKTERATELLPKLLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIP 67

Query: 240 PNW------LVNISTLVYVDLSDCDLYGRIPIGFGEL---PNLQYLSL------------ 278
                    L     L  +DLSD  L          L    +LQ L L            
Sbjct: 68  RGLQSLLQGLTKGCGLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRL 127

Query: 279 ----------------AGNNNLSGSC----SQLFRGSWKKIQILNFASNKLHG----KLP 314
                            G N L G+     ++  R + + ++ LN A+N +       L 
Sbjct: 128 LAKGLKDLPPALEKLVLGRNRLEGASCEALAKALR-ANRDLKELNLANNGIGDAGIRALA 186

Query: 315 SSVANMTSLTNFDLFDKKV--EGGIPSS--IARLCYLKEFDLSGNNLTGSLPEILQGT-D 369
             +    +L   DL +  +  EG    +  +A L  L+  +L  NNLT        G   
Sbjct: 187 EGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLT------DAGAAA 240

Query: 370 LCVSSNSPLPSLISMRLGNNHLK----GKLPEWLSQLENLVELTLSYN 413
           L  +  SP  SL+++ L  N +       L E L++ E+L+EL L  N
Sbjct: 241 LASALLSPNISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGN 288

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1). Length = 319

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 38.3 bits (90), Expect = 7e-04
 Identities = 20/56 (35%), Positives = 27/56 (48%), Gaps = 1/56 (1%)

Query: 98  LEYLDLSFNTFNDIPIPEFLGSLENLQYLNLSEAGFTGVVPSSLGNLHRLQYFDVS 153
           L+ LDLS N    IP       L NL+ L+LS    T + P +   L  L+  D+S
Sbjct: 2   LKSLDLSNNRLTVIP-DGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLS 56

Length = 60

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 37.5 bits (88), Expect = 0.001
 Identities = 25/69 (36%), Positives = 30/69 (43%), Gaps = 10/69 (14%)

Query: 347 LKEFDLSGNNLTGSLPEILQGTDLCVSSNSPLPSLISMRLGNNHLKGKLPEWLSQLENLV 406
           LK  DLS N LT       +G          LP+L  + L  N+L    PE  S L +L 
Sbjct: 2   LKSLDLSNNRLTVIPDGAFKG----------LPNLKVLDLSGNNLTSISPEAFSGLPSLR 51

Query: 407 ELTLSYNLL 415
            L LS N L
Sbjct: 52  SLDLSGNNL 60

Length = 60

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 36.8 bits (86), Expect = 0.003
 Identities = 21/60 (35%), Positives = 33/60 (55%)

Query: 619 NLIFLSVSGNRLTGKIPGSIGEMQLLQVIDLSRNSISGSISSSIGNCTFLKVLDLSYSSL 678
           NL  L +S NRLT    G+   +  L+V+DLS N+++     +      L+ LDLS ++L
Sbjct: 1   NLKSLDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGNNL 60

Length = 60

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 36.8 bits (86), Expect = 0.003
 Identities = 23/57 (40%), Positives = 32/57 (56%), Gaps = 1/57 (1%)

Query: 598 LDLSNNHFSGPIPQNISGSMPNLIFLSVSGNRLTGKIPGSIGEMQLLQVIDLSRNSI 654
           LDLSNN  +  IP      +PNL  L +SGN LT   P +   +  L+ +DLS N++
Sbjct: 5   LDLSNNRLTV-IPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGNNL 60

Length = 60

>gnl|CDD|238064 cd00116, LRR_RI, Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

 Score = 40.8 bits (96), Expect = 0.003
 Identities = 56/223 (25%), Positives = 83/223 (37%), Gaps = 40/223 (17%)

Query: 715 SLETLDLGNNRFSGNIPS---LLGNGF---VGLRILSLRSNAFSGEIPSKLSNL---SSL 765
           SL+ L L  N  +G IP     L  G     GL+ L L  NA   +    L +L   SSL
Sbjct: 52  SLKELCLSLN-ETGRIPRGLQSLLQGLTKGCGLQELDLSDNALGPDGCGVLESLLRSSSL 110

Query: 766 QVLDLAENNLTGSIPGSVGDLKAMA--HVQNIVKYLLFGRYRGIYYEENLVINTKGSSKD 823
           Q L L  N L          L A     +   ++ L+ GR        N +     S + 
Sbjct: 111 QELKLNNNGLGDRG----LRLLAKGLKDLPPALEKLVLGR--------NRL--EGASCEA 156

Query: 824 T------PRLFHFIDLSGNNLHGD-FPT---QLTKLVGLVVLNLSRNHI----GGQIPEN 869
                   R    ++L+ N +           L     L VL+L+ N +       + E 
Sbjct: 157 LAKALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAET 216

Query: 870 ISGLHQLASLDLSSNNLSGGIPSSLSSLSFLGYINLSRNQLSG 912
           ++ L  L  L+L  NNL+    ++L+S      I+L    LS 
Sbjct: 217 LASLKSLEVLNLGDNNLTDAGAAALASALLSPNISLLTLSLSC 259

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1). Length = 319

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	1009
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	100.0
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	100.0
KOG4194	873	consensus Membrane glycoprotein LIG-1 [Signal tran	100.0
KOG4194	873	consensus Membrane glycoprotein LIG-1 [Signal tran	100.0
KOG0472	565	consensus Leucine-rich repeat protein [Function un	100.0
KOG0472	565	consensus Leucine-rich repeat protein [Function un	100.0
KOG0618	1081	consensus Serine/threonine phosphatase 2C containi	99.98
KOG0618	1081	consensus Serine/threonine phosphatase 2C containi	99.97
KOG0444	1255	consensus Cytoskeletal regulator Flightless-I (con	99.96
KOG0444	1255	consensus Cytoskeletal regulator Flightless-I (con	99.96
KOG4237	498	consensus Extracellular matrix protein slit, conta	99.89
PLN03210	1153	Resistant to P. syringae 6; Provisional	99.88
PLN03210	1153	Resistant to P. syringae 6; Provisional	99.87
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	99.86
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	99.86
KOG4237	498	consensus Extracellular matrix protein slit, conta	99.82
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	99.78
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	99.78
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	99.74
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	99.69
KOG0617	264	consensus Ras suppressor protein (contains leucine	99.65
KOG0617	264	consensus Ras suppressor protein (contains leucine	99.61
PLN03150	623	hypothetical protein; Provisional	99.58
PLN03150	623	hypothetical protein; Provisional	99.41
KOG0532	722	consensus Leucine-rich repeat (LRR) protein, conta	99.24
KOG0532	722	consensus Leucine-rich repeat (LRR) protein, conta	99.22
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	99.17
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	99.15
KOG3207	505	consensus Beta-tubulin folding cofactor E [Posttra	98.98
KOG3207	505	consensus Beta-tubulin folding cofactor E [Posttra	98.95
KOG1259	490	consensus Nischarin, modulator of integrin alpha5	98.93
KOG1259	490	consensus Nischarin, modulator of integrin alpha5	98.92
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	98.91
KOG1909	382	consensus Ran GTPase-activating protein [RNA proce	98.9
KOG1909	382	consensus Ran GTPase-activating protein [RNA proce	98.87
KOG0531	414	consensus Protein phosphatase 1, regulatory subuni	98.85
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	98.82
KOG0531	414	consensus Protein phosphatase 1, regulatory subuni	98.81
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	98.78
PF08263	43	LRRNT_2: Leucine rich repeat N-terminal domain; In	98.76
KOG4658	889	consensus Apoptotic ATPase [Signal transduction me	98.7
KOG2120	419	consensus SCF ubiquitin ligase, Skp2 component [Po	98.66
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	98.66
KOG4658	889	consensus Apoptotic ATPase [Signal transduction me	98.6
KOG1859	1096	consensus Leucine-rich repeat proteins [General fu	98.49
KOG2120	419	consensus SCF ubiquitin ligase, Skp2 component [Po	98.48
KOG1859	1096	consensus Leucine-rich repeat proteins [General fu	98.4
KOG4341	483	consensus F-box protein containing LRR [General fu	98.2
KOG4341	483	consensus F-box protein containing LRR [General fu	98.13
KOG2982	418	consensus Uncharacterized conserved protein [Funct	98.1
KOG4579	177	consensus Leucine-rich repeat (LRR) protein associ	98.0
KOG4579	177	consensus Leucine-rich repeat (LRR) protein associ	97.99
KOG2982	418	consensus Uncharacterized conserved protein [Funct	97.78
PRK15386	426	type III secretion protein GogB; Provisional	97.76
COG5238	388	RNA1 Ran GTPase-activating protein (RanGAP) involv	97.65
COG5238	388	RNA1 Ran GTPase-activating protein (RanGAP) involv	97.65
KOG1644	233	consensus U2-associated snRNP A' protein [RNA proc	97.61
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	97.61
PRK15386	426	type III secretion protein GogB; Provisional	97.57
PF13306	129	LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_	97.52
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	97.49
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	97.32
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	97.26
PF13306	129	LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_	97.2
KOG2739	260	consensus Leucine-rich acidic nuclear protein [Cel	97.18
KOG1644	233	consensus U2-associated snRNP A' protein [RNA proc	97.06
KOG1947	482	consensus Leucine rich repeat proteins, some prote	96.61
KOG1947	482	consensus Leucine rich repeat proteins, some prote	96.6
KOG2123	388	consensus Uncharacterized conserved protein [Funct	96.26
KOG2739	260	consensus Leucine-rich acidic nuclear protein [Cel	96.2
KOG2123	388	consensus Uncharacterized conserved protein [Funct	95.46
PF00560	22	LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le	95.13
PF00560	22	LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le	95.04
KOG4308	478	consensus LRR-containing protein [Function unknown	91.68
KOG4308	478	consensus LRR-containing protein [Function unknown	90.73
KOG3864	221	consensus Uncharacterized conserved protein [Funct	89.16
PF13504	17	LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OO	86.86
smart00370	26	LRR Leucine-rich repeats, outliers.	86.72
smart00369	26	LRR_TYP Leucine-rich repeats, typical (most popula	86.72
KOG0473	326	consensus Leucine-rich repeat protein [Function un	86.43
KOG0473	326	consensus Leucine-rich repeat protein [Function un	85.89
smart00369	26	LRR_TYP Leucine-rich repeats, typical (most popula	85.89
smart00370	26	LRR Leucine-rich repeats, outliers.	85.89

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=100.00  E-value=6.7e-71  Score=700.22  Aligned_cols=583  Identities=37%  Similarity=0.605  Sum_probs=365.9

Q ss_pred             CHHHHHHHHHhhhcCCCCCCCccCCC-CCCCCCccceeecCCCCcEEEEecCCCCCCCCCCCCCCcCCEEeCCCCCCCCC
Q 036375           33 SENDLDALIDFKNGLEDPESRLASWK-GSNCCQWHGISCDDDTGAIVAINLGNPYHVVNSDSSGSLLEYLDLSFNTFNDI  111 (1009)
Q Consensus        33 ~~~~~~~ll~~k~~~~~~~~~~~~W~-~~~~c~w~gv~c~~~~~~v~~l~l~~~~gi~~~l~~l~~L~~LdLs~~~~~~~  111 (1009)
                      .++|++||++||+++.+|.+.+.+|+ +++||.|.||+|+. .++|+.|+|++                     +.+.+ 
T Consensus        27 ~~~~~~~l~~~~~~~~~~~~~~~~w~~~~~~c~w~gv~c~~-~~~v~~L~L~~---------------------~~i~~-   83 (968)
T PLN00113         27 HAEELELLLSFKSSINDPLKYLSNWNSSADVCLWQGITCNN-SSRVVSIDLSG---------------------KNISG-   83 (968)
T ss_pred             CHHHHHHHHHHHHhCCCCcccCCCCCCCCCCCcCcceecCC-CCcEEEEEecC---------------------CCccc-
Confidence            46899999999999988888889998 57899999999986 47888887655                     44444 


Q ss_pred             CCCcccCCCCCCceeecccCCCCccCCCCCC-CCCCCCeeeCCCccccccCCCcccccCCCCCCeEEcCCccCCCCcchh
Q 036375          112 PIPEFLGSLENLQYLNLSEAGFTGVVPSSLG-NLHRLQYFDVSAELFALSADSLDWLTGLVSLKHLAMNRVDLSLVGSEW  190 (1009)
Q Consensus       112 ~lp~~i~~l~~L~~L~Ls~~~~~~~lp~~l~-~L~~L~~L~Ls~~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~  190 (1009)
                      .+|..+..+++|++|+|++|.+.+.+|..+. ++++|++|++++|                                   
T Consensus        84 ~~~~~~~~l~~L~~L~Ls~n~~~~~ip~~~~~~l~~L~~L~Ls~n-----------------------------------  128 (968)
T PLN00113         84 KISSAIFRLPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNN-----------------------------------  128 (968)
T ss_pred             cCChHHhCCCCCCEEECCCCccCCcCChHHhccCCCCCEEECcCC-----------------------------------
Confidence            3455566666666666666666655554433 4444444444444                                   


Q ss_pred             hhhhcCCCCccEEEcCCCcCCCCCCCCCCCCCCCCcEEECCCCCCCCCchhhhhcCCCCcEEEccCCcCcccCCcccCCC
Q 036375          191 LGILKNLPNLTELHLSVCGLTGSITSITPVNLTSPAVLDLSLNHFNSLFPNWLVNISTLVYVDLSDCDLYGRIPIGFGEL  270 (1009)
Q Consensus       191 ~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~L~~n~~~~~~p~~l~~l  270 (1009)
                                        .+++.+|.   ..+++|++|++++|.+.+.+|..++++++|++|++++|.+.+.+|..++++
T Consensus       129 ------------------~l~~~~p~---~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l  187 (968)
T PLN00113        129 ------------------NFTGSIPR---GSIPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNL  187 (968)
T ss_pred             ------------------ccccccCc---cccCCCCEEECcCCcccccCChHHhcCCCCCEEECccCcccccCChhhhhC
Confidence                              22222221   234455555555555555556666666666666666666666666666666


Q ss_pred             CCCCEEEcCCCCCCCCcccccccCCCCCccEEEcccccccccCCccccCCCCCCEEEccCCcccccCchhhhcccCCCEE
Q 036375          271 PNLQYLSLAGNNNLSGSCSQLFRGSWKKIQILNFASNKLHGKLPSSVANMTSLTNFDLFDKKVEGGIPSSIARLCYLKEF  350 (1009)
Q Consensus       271 ~~L~~L~L~~n~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L  350 (1009)
                      ++|++|++++|.                          +.+.+|..++++++|++|++++|.+.+.+|..++++++|++|
T Consensus       188 ~~L~~L~L~~n~--------------------------l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L  241 (968)
T PLN00113        188 TSLEFLTLASNQ--------------------------LVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHL  241 (968)
T ss_pred             cCCCeeeccCCC--------------------------CcCcCChHHcCcCCccEEECcCCccCCcCChhHhcCCCCCEE
Confidence            666666555552                          234445555555555555555555555555555544444444


Q ss_pred             EcCCCcCCCCCCccccccccccCCCCCCCCCcEEECcCCcCcccCChhhcCCCCCCEEeCcCCcccccCCCCCCCCCCCc
Q 036375          351 DLSGNNLTGSLPEILQGTDLCVSSNSPLPSLISMRLGNNHLKGKLPEWLSQLENLVELTLSYNLLQGPIPASLGNLKNLT  430 (1009)
Q Consensus       351 ~l~~n~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~  430 (1009)
                      ++++|.+++                                  .+|..+.++++|++|++++|.+.+.+|..+.++++|+
T Consensus       242 ~L~~n~l~~----------------------------------~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~  287 (968)
T PLN00113        242 DLVYNNLTG----------------------------------PIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLI  287 (968)
T ss_pred             ECcCceecc----------------------------------ccChhHhCCCCCCEEECcCCeeeccCchhHhhccCcC
Confidence            444444433                                  3344444444455555555554444454555555555


Q ss_pred             EEeCCCCcCCCCCCcccCCCCCCCEEEccCcccccccchhhhccCCCCcEEeCCCCcccccCCCCCCCCccccEEecccC
Q 036375          431 KLNLPGNQLNGTLPETLGSLPELSVLDVSSNSLTGIISEIHFSRLSKLKFLGLSSNSFILNVSSSWIPPFQVQSLNMRSC  510 (1009)
Q Consensus       431 ~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~~  510 (1009)
                      +|++++|.+.+.+|..+.++++|+.|++++|.+++..+.. +..+++|++|++++                         
T Consensus       288 ~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~-~~~l~~L~~L~L~~-------------------------  341 (968)
T PLN00113        288 SLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIPVA-LTSLPRLQVLQLWS-------------------------  341 (968)
T ss_pred             EEECcCCeeccCCChhHcCCCCCcEEECCCCccCCcCChh-HhcCCCCCEEECcC-------------------------
Confidence            5555555555555555555555555555555544332221 11122211111111                         


Q ss_pred             cCCCCCCcccccCCCccEEEccCCcccCCCCchhhhccCcccEEEeccccccccCCCCCCCCCcCeEeccCCCCCCCCCC
Q 036375          511 QLGPSFPSWLKTQQGVSFLDFSNASISGPIPNWFWDISSKLSLLNVSLNQLQGQLPNPLNIAPFADVDFRSNLLEGPIPL  590 (1009)
Q Consensus       511 ~~~~~~~~~l~~~~~L~~L~ls~n~i~~~~p~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~~l~~l~l~~n~l~~~~~~  590 (1009)
                                                                                                      
T Consensus       342 --------------------------------------------------------------------------------  341 (968)
T PLN00113        342 --------------------------------------------------------------------------------  341 (968)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             CCCCccEEEccCCcCCCcCCchhhcCCCCccEEEccCCcccccCCcccccCCCCCeEEccCCcCCccCcCcccCCCCCCE
Q 036375          591 PIVEIELLDLSNNHFSGPIPQNISGSMPNLIFLSVSGNRLTGKIPGSIGEMQLLQVIDLSRNSISGSISSSIGNCTFLKV  670 (1009)
Q Consensus       591 ~~~~L~~L~Ls~n~l~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~  670 (1009)
                                  |.+.+.+|.. +..+++|+.|++++|++++.+|..++.+++|+.|++++|++.+.+|..+..+++   
T Consensus       342 ------------n~l~~~~p~~-l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~---  405 (968)
T PLN00113        342 ------------NKFSGEIPKN-LGKHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKSLGACRS---  405 (968)
T ss_pred             ------------CCCcCcCChH-HhCCCCCcEEECCCCeeEeeCChhHhCcCCCCEEECcCCEecccCCHHHhCCCC---
Confidence                        1111111111 112233333444444333333444444444555555555555444444444444   


Q ss_pred             EECCCCcCcccCCccccCCCCCCEEEccCccccCCCchhhcCCCCCCEEECcCCcccccCchhhhhcCcCCcEEEccCCc
Q 036375          671 LDLSYSSLSGVIPASLGQLTRLQSLHLNNNKLTGNLPSSFQNLTSLETLDLGNNRFSGNIPSLLGNGFVGLRILSLRSNA  750 (1009)
Q Consensus       671 L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~ip~~l~~~l~~L~~L~L~~N~  750 (1009)
                                           |+.|++++|++++.+|..|..+++|+.|++++|.+++.+|..+. .+++|+.|++++|+
T Consensus       406 ---------------------L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~-~l~~L~~L~L~~n~  463 (968)
T PLN00113        406 ---------------------LRRVRLQDNSFSGELPSEFTKLPLVYFLDISNNNLQGRINSRKW-DMPSLQMLSLARNK  463 (968)
T ss_pred             ---------------------CCEEECcCCEeeeECChhHhcCCCCCEEECcCCcccCccChhhc-cCCCCcEEECcCce
Confidence                                 44555555554444444455555555555555555554544443 25555555555555


Q ss_pred             ccccCCcccCCCCCCCEEEccCCcCCCCCChhhhhhhhhhhccchhhhhhccccccceeeceEEEeecCCCCCCCCceeE
Q 036375          751 FSGEIPSKLSNLSSLQVLDLAENNLTGSIPGSVGDLKAMAHVQNIVKYLLFGRYRGIYYEENLVINTKGSSKDTPRLFHF  830 (1009)
Q Consensus       751 l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  830 (1009)
                      +.+.+|..+ ..++|+.||+++|++++.+|..+.+++.|                                       +.
T Consensus       464 ~~~~~p~~~-~~~~L~~L~ls~n~l~~~~~~~~~~l~~L---------------------------------------~~  503 (968)
T PLN00113        464 FFGGLPDSF-GSKRLENLDLSRNQFSGAVPRKLGSLSEL---------------------------------------MQ  503 (968)
T ss_pred             eeeecCccc-ccccceEEECcCCccCCccChhhhhhhcc---------------------------------------CE
Confidence            555555443 34678888888888888888888887776                                       78


Q ss_pred             EEccCCccCCCCCccccCcCCCCeEEccCCcccccCCCCccCCCCCCEEeCCCCcCCCCCcccccCCCCCCeEeCCCCcc
Q 036375          831 IDLSGNNLHGDFPTQLTKLVGLVVLNLSRNHIGGQIPENISGLHQLASLDLSSNNLSGGIPSSLSSLSFLGYINLSRNQL  910 (1009)
Q Consensus       831 L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~ls~N~l  910 (1009)
                      |+|++|++++.+|..++++++|++|+|++|.++|.+|..++++++|+.|||++|+++|.+|..+..+++|++|++++|++
T Consensus       504 L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~ls~N~l  583 (968)
T PLN00113        504 LKLSENKLSGEIPDELSSCKKLVSLDLSHNQLSGQIPASFSEMPVLSQLDLSQNQLSGEIPKNLGNVESLVQVNISHNHL  583 (968)
T ss_pred             EECcCCcceeeCChHHcCccCCCEEECCCCcccccCChhHhCcccCCEEECCCCcccccCChhHhcCcccCEEeccCCcc
Confidence            89999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             eecCCCCCCCCcccCCcCCCCCCCCCCC
Q 036375          911 SGKIPFEGHMTTFDASSFAGNPGLCGDP  938 (1009)
Q Consensus       911 ~g~ip~~~~~~~~~~~~~~~n~~lc~~~  938 (1009)
                      +|.+|..+++.++...++.||+.+||.+
T Consensus       584 ~~~~p~~~~~~~~~~~~~~~n~~lc~~~  611 (968)
T PLN00113        584 HGSLPSTGAFLAINASAVAGNIDLCGGD  611 (968)
T ss_pred             eeeCCCcchhcccChhhhcCCccccCCc
Confidence            9999999999999999999999999864

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=100.00  E-value=7.4e-57  Score=571.77  Aligned_cols=515  Identities=35%  Similarity=0.555  Sum_probs=448.2

Q ss_pred             CCccEEEcccccccccCCccccCCCCCCEEEccCCcccccCchhhh-cccCCCEEEcCCCcCCCCCCccccccccccCCC
Q 036375          297 KKIQILNFASNKLHGKLPSSVANMTSLTNFDLFDKKVEGGIPSSIA-RLCYLKEFDLSGNNLTGSLPEILQGTDLCVSSN  375 (1009)
Q Consensus       297 ~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~~~~~~~~~l~-~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~  375 (1009)
                      .+++.|++++|.+.+.+|..+..+++|+.|++++|.+.+.+|..+. .+++|++|++++|.+++.+|..           
T Consensus        69 ~~v~~L~L~~~~i~~~~~~~~~~l~~L~~L~Ls~n~~~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~~-----------  137 (968)
T PLN00113         69 SRVVSIDLSGKNISGKISSAIFRLPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNNNFTGSIPRG-----------  137 (968)
T ss_pred             CcEEEEEecCCCccccCChHHhCCCCCCEEECCCCccCCcCChHHhccCCCCCEEECcCCccccccCcc-----------
Confidence            4677777777788888888888899999999999988888887765 8889999999999888877753           


Q ss_pred             CCCCCCcEEECcCCcCcccCChhhcCCCCCCEEeCcCCcccccCCCCCCCCCCCcEEeCCCCcCCCCCCcccCCCCCCCE
Q 036375          376 SPLPSLISMRLGNNHLKGKLPEWLSQLENLVELTLSYNLLQGPIPASLGNLKNLTKLNLPGNQLNGTLPETLGSLPELSV  455 (1009)
Q Consensus       376 ~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~  455 (1009)
                       .+++|++|++++|.+.+.+|..++++++|++|++++|.+.+.+|..+.++++|++|++++|.+.+.+|..++++++|++
T Consensus       138 -~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~  216 (968)
T PLN00113        138 -SIPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKW  216 (968)
T ss_pred             -ccCCCCEEECcCCcccccCChHHhcCCCCCEEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccE
Confidence             5788999999999998888888999999999999999988888888999999999999999998888888899999999


Q ss_pred             EEccCcccccccchhhhccCCCCcEEeCCCCcccccCCCCCCCCccccEEecccCcCCCCCCcccccCCCccEEEccCCc
Q 036375          456 LDVSSNSLTGIISEIHFSRLSKLKFLGLSSNSFILNVSSSWIPPFQVQSLNMRSCQLGPSFPSWLKTQQGVSFLDFSNAS  535 (1009)
Q Consensus       456 L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~ls~n~  535 (1009)
                      |++++|.+++.++. .+.++++|++|++++|.+                        .+.+|..+..+++|+.|++++|.
T Consensus       217 L~L~~n~l~~~~p~-~l~~l~~L~~L~L~~n~l------------------------~~~~p~~l~~l~~L~~L~L~~n~  271 (968)
T PLN00113        217 IYLGYNNLSGEIPY-EIGGLTSLNHLDLVYNNL------------------------TGPIPSSLGNLKNLQYLFLYQNK  271 (968)
T ss_pred             EECcCCccCCcCCh-hHhcCCCCCEEECcCcee------------------------ccccChhHhCCCCCCEEECcCCe
Confidence            99999998877776 377888888887777754                        34567778888889999999888


Q ss_pred             ccCCCCchhhhccCcccEEEeccccccccCCCCCCCCCcCeEeccCCCCCCCCCCCCCCccEEEccCCcCCCcCCchhhc
Q 036375          536 ISGPIPNWFWDISSKLSLLNVSLNQLQGQLPNPLNIAPFADVDFRSNLLEGPIPLPIVEIELLDLSNNHFSGPIPQNISG  615 (1009)
Q Consensus       536 i~~~~p~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~~l~~l~l~~n~l~~~~~~~~~~L~~L~Ls~n~l~~~ip~~~~~  615 (1009)
                      +++.+|..+.. +                                            .+|+.|++++|.+.+.+|. .+.
T Consensus       272 l~~~~p~~l~~-l--------------------------------------------~~L~~L~Ls~n~l~~~~p~-~~~  305 (968)
T PLN00113        272 LSGPIPPSIFS-L--------------------------------------------QKLISLDLSDNSLSGEIPE-LVI  305 (968)
T ss_pred             eeccCchhHhh-c--------------------------------------------cCcCEEECcCCeeccCCCh-hHc
Confidence            88877776642 2                                            3455556666666656654 335


Q ss_pred             CCCCccEEEccCCcccccCCcccccCCCCCeEEccCCcCCccCcCcccCCCCCCEEECCCCcCcccCCccccCCCCCCEE
Q 036375          616 SMPNLIFLSVSGNRLTGKIPGSIGEMQLLQVIDLSRNSISGSISSSIGNCTFLKVLDLSYSSLSGVIPASLGQLTRLQSL  695 (1009)
Q Consensus       616 ~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L  695 (1009)
                      .+++|++|++++|.+++..|..++.+++|+.|++++|.+.+.+|..++.+++|+.|++++|++++.+|..+..+++|+.|
T Consensus       306 ~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L  385 (968)
T PLN00113        306 QLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKL  385 (968)
T ss_pred             CCCCCcEEECCCCccCCcCChhHhcCCCCCEEECcCCCCcCcCChHHhCCCCCcEEECCCCeeEeeCChhHhCcCCCCEE
Confidence            68889999999999998899999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EccCccccCCCchhhcCCCCCCEEECcCCcccccCchhhhhcCcCCcEEEccCCcccccCCcccCCCCCCCEEEccCCcC
Q 036375          696 HLNNNKLTGNLPSSFQNLTSLETLDLGNNRFSGNIPSLLGNGFVGLRILSLRSNAFSGEIPSKLSNLSSLQVLDLAENNL  775 (1009)
Q Consensus       696 ~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~ip~~l~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l  775 (1009)
                      ++++|++.+.+|..+..+++|+.|++++|++++.+|..+. .+++|+.|++++|.+++.+|..+..+++|+.|++++|++
T Consensus       386 ~l~~n~l~~~~p~~~~~~~~L~~L~L~~n~l~~~~p~~~~-~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~~  464 (968)
T PLN00113        386 ILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGELPSEFT-KLPLVYFLDISNNNLQGRINSRKWDMPSLQMLSLARNKF  464 (968)
T ss_pred             ECcCCEecccCCHHHhCCCCCCEEECcCCEeeeECChhHh-cCCCCCEEECcCCcccCccChhhccCCCCcEEECcCcee
Confidence            9999999999999999999999999999999999999877 499999999999999999999999999999999999999


Q ss_pred             CCCCChhhhhhhhhhhccchhhhhhccccccceeeceEEEeecCCCCCCCCceeEEEccCCccCCCCCccccCcCCCCeE
Q 036375          776 TGSIPGSVGDLKAMAHVQNIVKYLLFGRYRGIYYEENLVINTKGSSKDTPRLFHFIDLSGNNLHGDFPTQLTKLVGLVVL  855 (1009)
Q Consensus       776 ~~~~p~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~Ls~N~l~~~~p~~l~~l~~L~~L  855 (1009)
                      .+.+|..++ .+.                                       ++.|||++|++++.+|..+.++++|+.|
T Consensus       465 ~~~~p~~~~-~~~---------------------------------------L~~L~ls~n~l~~~~~~~~~~l~~L~~L  504 (968)
T PLN00113        465 FGGLPDSFG-SKR---------------------------------------LENLDLSRNQFSGAVPRKLGSLSELMQL  504 (968)
T ss_pred             eeecCcccc-ccc---------------------------------------ceEEECcCCccCCccChhhhhhhccCEE
Confidence            998887543 222                                       3899999999999999999999999999


Q ss_pred             EccCCcccccCCCCccCCCCCCEEeCCCCcCCCCCcccccCCCCCCeEeCCCCcceecCCCC-CCCCcccCCcCCCCCCC
Q 036375          856 NLSRNHIGGQIPENISGLHQLASLDLSSNNLSGGIPSSLSSLSFLGYINLSRNQLSGKIPFE-GHMTTFDASSFAGNPGL  934 (1009)
Q Consensus       856 ~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~ls~N~l~g~ip~~-~~~~~~~~~~~~~n~~l  934 (1009)
                      +|++|++++.+|+.+.++++|++|+|++|.++|.+|..++.+++|++||+++|+++|.+|.. ..+..+....+.+|+..
T Consensus       505 ~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~ls~N~l~  584 (968)
T PLN00113        505 KLSENKLSGEIPDELSSCKKLVSLDLSHNQLSGQIPASFSEMPVLSQLDLSQNQLSGEIPKNLGNVESLVQVNISHNHLH  584 (968)
T ss_pred             ECcCCcceeeCChHHcCccCCCEEECCCCcccccCChhHhCcccCCEEECCCCcccccCChhHhcCcccCEEeccCCcce
Confidence            99999999999999999999999999999999999999999999999999999999999975 33445556667788755


Q ss_pred             C
Q 036375          935 C  935 (1009)
Q Consensus       935 c  935 (1009)
                      +
T Consensus       585 ~  585 (968)
T PLN00113        585 G  585 (968)
T ss_pred             e
Confidence            4

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]

Probab=100.00  E-value=1.6e-36  Score=321.79  Aligned_cols=375  Identities=24%  Similarity=0.276  Sum_probs=301.0

Q ss_pred             cccEEecccCcCCCCCCcccccCCCccEEEccCCcccCCCCchhhhccCcccEEEeccccccccCCCCCCCCCcCeEecc
Q 036375          501 QVQSLNMRSCQLGPSFPSWLKTQQGVSFLDFSNASISGPIPNWFWDISSKLSLLNVSLNQLQGQLPNPLNIAPFADVDFR  580 (1009)
Q Consensus       501 ~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~ls~n~i~~~~p~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~~l~~l~l~  580 (1009)
                      ..+.|++++|.+....+..|.++++|+++++.+|.++ .||... .....++.|+|.+|.++..-.+.+           
T Consensus        79 ~t~~LdlsnNkl~~id~~~f~nl~nLq~v~l~~N~Lt-~IP~f~-~~sghl~~L~L~~N~I~sv~se~L-----------  145 (873)
T KOG4194|consen   79 QTQTLDLSNNKLSHIDFEFFYNLPNLQEVNLNKNELT-RIPRFG-HESGHLEKLDLRHNLISSVTSEEL-----------  145 (873)
T ss_pred             ceeeeeccccccccCcHHHHhcCCcceeeeeccchhh-hccccc-ccccceeEEeeeccccccccHHHH-----------
Confidence            4555666666667777777777777777777777776 444432 233457777777776654322222           


Q ss_pred             CCCCCCCCCCCCCCccEEEccCCcCCCcCCchhhcCCCCccEEEccCCcccccCCcccccCCCCCeEEccCCcCCccCcC
Q 036375          581 SNLLEGPIPLPIVEIELLDLSNNHFSGPIPQNISGSMPNLIFLSVSGNRLTGKIPGSIGEMQLLQVIDLSRNSISGSISS  660 (1009)
Q Consensus       581 ~n~l~~~~~~~~~~L~~L~Ls~n~l~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~  660 (1009)
                               ..++.|+.||||.|.++ .+|...|..-.++++|+|++|+|+....+.|.++.+|..|.|++|+++...+.
T Consensus       146 ---------~~l~alrslDLSrN~is-~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNrittLp~r  215 (873)
T KOG4194|consen  146 ---------SALPALRSLDLSRNLIS-EIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLSRNRITTLPQR  215 (873)
T ss_pred             ---------HhHhhhhhhhhhhchhh-cccCCCCCCCCCceEEeeccccccccccccccccchheeeecccCcccccCHH
Confidence                     12467888999999988 77777777778899999999999999999999999999999999999988888


Q ss_pred             cccCCCCCCEEECCCCcCcccCCccccCCCCCCEEEccCccccCCCchhhcCCCCCCEEECcCCcccccCchhhhhcCcC
Q 036375          661 SIGNCTFLKVLDLSYSSLSGVIPASLGQLTRLQSLHLNNNKLTGNLPSSFQNLTSLETLDLGNNRFSGNIPSLLGNGFVG  740 (1009)
Q Consensus       661 ~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~ip~~l~~~l~~  740 (1009)
                      .|.+++.|+.|+|..|+|.-.---.|.++++|+.|.|..|.+...--..|..|.++++|+|+.|+++..-..|++ ++++
T Consensus       216 ~Fk~L~~L~~LdLnrN~irive~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lf-gLt~  294 (873)
T KOG4194|consen  216 SFKRLPKLESLDLNRNRIRIVEGLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQAVNEGWLF-GLTS  294 (873)
T ss_pred             HhhhcchhhhhhccccceeeehhhhhcCchhhhhhhhhhcCcccccCcceeeecccceeecccchhhhhhccccc-ccch
Confidence            899999999999999999855456789999999999999999977778899999999999999999866667777 5999


Q ss_pred             CcEEEccCCcccccCCcccCCCCCCCEEEccCCcCCCCCChhhhhhhhhhhccchhhhhhccccccceeeceEEEeecCC
Q 036375          741 LRILSLRSNAFSGEIPSKLSNLSSLQVLDLAENNLTGSIPGSVGDLKAMAHVQNIVKYLLFGRYRGIYYEENLVINTKGS  820 (1009)
Q Consensus       741 L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  820 (1009)
                      |+.|++++|.+...-++....+++|++|||++|+++..-++.|..|..|                               
T Consensus       295 L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~N~i~~l~~~sf~~L~~L-------------------------------  343 (873)
T KOG4194|consen  295 LEQLDLSYNAIQRIHIDSWSFTQKLKELDLSSNRITRLDEGSFRVLSQL-------------------------------  343 (873)
T ss_pred             hhhhccchhhhheeecchhhhcccceeEeccccccccCChhHHHHHHHh-------------------------------
Confidence            9999999999998888888899999999999999998888888888887                               


Q ss_pred             CCCCCCceeEEEccCCccCCCCCccccCcCCCCeEEccCCcccccCCC---CccCCCCCCEEeCCCCcCCCCCcccccCC
Q 036375          821 SKDTPRLFHFIDLSGNNLHGDFPTQLTKLVGLVVLNLSRNHIGGQIPE---NISGLHQLASLDLSSNNLSGGIPSSLSSL  897 (1009)
Q Consensus       821 ~~~~~~~l~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~---~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l  897 (1009)
                              +.|+|++|.++..-...|..+++|+.|||++|.+++.|-+   .|.+|++|+.|+|-+|+|..+...+|.++
T Consensus       344 --------e~LnLs~Nsi~~l~e~af~~lssL~~LdLr~N~ls~~IEDaa~~f~gl~~LrkL~l~gNqlk~I~krAfsgl  415 (873)
T KOG4194|consen  344 --------EELNLSHNSIDHLAEGAFVGLSSLHKLDLRSNELSWCIEDAAVAFNGLPSLRKLRLTGNQLKSIPKRAFSGL  415 (873)
T ss_pred             --------hhhcccccchHHHHhhHHHHhhhhhhhcCcCCeEEEEEecchhhhccchhhhheeecCceeeecchhhhccC
Confidence                    7788999999888888889999999999999999887654   57789999999999999998777889999


Q ss_pred             CCCCeEeCCCCcceecCCCCCCCCcccCCcCCCCCCCCCCC
Q 036375          898 SFLGYINLSRNQLSGKIPFEGHMTTFDASSFAGNPGLCGDP  938 (1009)
Q Consensus       898 ~~L~~L~ls~N~l~g~ip~~~~~~~~~~~~~~~n~~lc~~~  938 (1009)
                      ..|+.|||.+|.+-..-|..-....++..-+..-..+|.+.
T Consensus       416 ~~LE~LdL~~NaiaSIq~nAFe~m~Lk~Lv~nSssflCDCq  456 (873)
T KOG4194|consen  416 EALEHLDLGDNAIASIQPNAFEPMELKELVMNSSSFLCDCQ  456 (873)
T ss_pred             cccceecCCCCcceeecccccccchhhhhhhcccceEEecc
Confidence            99999999999887655543111133333333344677653

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]

Probab=100.00  E-value=2.4e-36  Score=320.47  Aligned_cols=302  Identities=26%  Similarity=0.257  Sum_probs=182.7

Q ss_pred             CEEeCcCCcccccCCCCCCCCCCCcEEeCCCCcCCCCCCcccCCCCCCCEEEccCcccccccchhhhccCCCCcEEeCCC
Q 036375          406 VELTLSYNLLQGPIPASLGNLKNLTKLNLPGNQLNGTLPETLGSLPELSVLDVSSNSLTGIISEIHFSRLSKLKFLGLSS  485 (1009)
Q Consensus       406 ~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~  485 (1009)
                      +.|++++|++....+..|.++++|+.+++..|.++ .+|.......+|+.|+|.+|.++.. ....++.++.|++|||+.
T Consensus        81 ~~LdlsnNkl~~id~~~f~nl~nLq~v~l~~N~Lt-~IP~f~~~sghl~~L~L~~N~I~sv-~se~L~~l~alrslDLSr  158 (873)
T KOG4194|consen   81 QTLDLSNNKLSHIDFEFFYNLPNLQEVNLNKNELT-RIPRFGHESGHLEKLDLRHNLISSV-TSEELSALPALRSLDLSR  158 (873)
T ss_pred             eeeeccccccccCcHHHHhcCCcceeeeeccchhh-hcccccccccceeEEeeeccccccc-cHHHHHhHhhhhhhhhhh
Confidence            44666666666655556666666666666666665 4555444444566666666666543 333466666677777776


Q ss_pred             CcccccCCCCCCCCccccEEecccCcCCCCCCcccccCCCccEEEccCCcccCCCCchhhhccCcccEEEeccccccccC
Q 036375          486 NSFILNVSSSWIPPFQVQSLNMRSCQLGPSFPSWLKTQQGVSFLDFSNASISGPIPNWFWDISSKLSLLNVSLNQLQGQL  565 (1009)
Q Consensus       486 n~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~ls~n~i~~~~p~~~~~~~~~L~~L~ls~n~l~~~~  565 (1009)
                      |.+..+....|....++++|++++|.++..-...|..+                                          
T Consensus       159 N~is~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~l------------------------------------------  196 (873)
T KOG4194|consen  159 NLISEIPKPSFPAKVNIKKLNLASNRITTLETGHFDSL------------------------------------------  196 (873)
T ss_pred             chhhcccCCCCCCCCCceEEeecccccccccccccccc------------------------------------------
Confidence            66655444444333333333333333332222222222                                          


Q ss_pred             CCCCCCCCcCeEeccCCCCCCCCCCCCCCccEEEccCCcCCCcCCchhhcCCCCccEEEccCCcccccCCcccccCCCCC
Q 036375          566 PNPLNIAPFADVDFRSNLLEGPIPLPIVEIELLDLSNNHFSGPIPQNISGSMPNLIFLSVSGNRLTGKIPGSIGEMQLLQ  645 (1009)
Q Consensus       566 ~~~~~~~~l~~l~l~~n~l~~~~~~~~~~L~~L~Ls~n~l~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~  645 (1009)
                                                 .+|..|.|++|.++ .+|...|..+++|+.|+|..|+|.-.---.|.++++|+
T Consensus       197 ---------------------------nsL~tlkLsrNrit-tLp~r~Fk~L~~L~~LdLnrN~irive~ltFqgL~Sl~  248 (873)
T KOG4194|consen  197 ---------------------------NSLLTLKLSRNRIT-TLPQRSFKRLPKLESLDLNRNRIRIVEGLTFQGLPSLQ  248 (873)
T ss_pred             ---------------------------chheeeecccCccc-ccCHHHhhhcchhhhhhccccceeeehhhhhcCchhhh
Confidence                                       23444444444544 56666666666666777766666644345666777777


Q ss_pred             eEEccCCcCCccCcCcccCCCCCCEEECCCCcCcccCCccccCCCCCCEEEccCccccCCCchhhcCCCCCCEEECcCCc
Q 036375          646 VIDLSRNSISGSISSSIGNCTFLKVLDLSYSSLSGVIPASLGQLTRLQSLHLNNNKLTGNLPSSFQNLTSLETLDLGNNR  725 (1009)
Q Consensus       646 ~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~  725 (1009)
                      .|.|..|.+.....+.|-.|.++++|+|+.|+++..-..++.++++|+.|++++|.|...-++++.-+++|++|+|+.|+
T Consensus       249 nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~N~  328 (873)
T KOG4194|consen  249 NLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYNAIQRIHIDSWSFTQKLKELDLSSNR  328 (873)
T ss_pred             hhhhhhcCcccccCcceeeecccceeecccchhhhhhcccccccchhhhhccchhhhheeecchhhhcccceeEeccccc
Confidence            77777777776666667777777777777777776666677777777777777777776666777777777777777777


Q ss_pred             ccccCchhhhhcCcCCcEEEccCCcccccCCcccCCCCCCCEEEccCCcCCCCCC
Q 036375          726 FSGNIPSLLGNGFVGLRILSLRSNAFSGEIPSKLSNLSSLQVLDLAENNLTGSIP  780 (1009)
Q Consensus       726 l~~~ip~~l~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p  780 (1009)
                      ++ .+++.-+..+..|+.|.|++|.++..-...|..+++|+.|||++|.+++.|-
T Consensus       329 i~-~l~~~sf~~L~~Le~LnLs~Nsi~~l~e~af~~lssL~~LdLr~N~ls~~IE  382 (873)
T KOG4194|consen  329 IT-RLDEGSFRVLSQLEELNLSHNSIDHLAEGAFVGLSSLHKLDLRSNELSWCIE  382 (873)
T ss_pred             cc-cCChhHHHHHHHhhhhcccccchHHHHhhHHHHhhhhhhhcCcCCeEEEEEe
Confidence            76 4444433346666666677666664444556666666666666666665443

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]

Probab=100.00  E-value=4.1e-39  Score=327.30  Aligned_cols=475  Identities=28%  Similarity=0.423  Sum_probs=301.2

Q ss_pred             CccEEEcccccccccCCccccCCCCCCEEEccCCcccccCchhhhcccCCCEEEcCCCcCCCCCCccccccccccCCCCC
Q 036375          298 KIQILNFASNKLHGKLPSSVANMTSLTNFDLFDKKVEGGIPSSIARLCYLKEFDLSGNNLTGSLPEILQGTDLCVSSNSP  377 (1009)
Q Consensus       298 ~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~  377 (1009)
                      .++.+.+++|.+. .+.+.+.++..|.++++++|++. ..|++++.+.+++.++.++|++.. +|+.+.          .
T Consensus        46 ~l~~lils~N~l~-~l~~dl~nL~~l~vl~~~~n~l~-~lp~aig~l~~l~~l~vs~n~ls~-lp~~i~----------s  112 (565)
T KOG0472|consen   46 DLQKLILSHNDLE-VLREDLKNLACLTVLNVHDNKLS-QLPAAIGELEALKSLNVSHNKLSE-LPEQIG----------S  112 (565)
T ss_pred             chhhhhhccCchh-hccHhhhcccceeEEEeccchhh-hCCHHHHHHHHHHHhhcccchHhh-ccHHHh----------h
Confidence            4555555555555 33345677777888888888777 567777877777788887777763 343333          4


Q ss_pred             CCCCcEEECcCCcCcccCChhhcCCCCCCEEeCcCCcccccCCCCCCCCCCCcEEeCCCCcCCCCCCcccCCCCCCCEEE
Q 036375          378 LPSLISMRLGNNHLKGKLPEWLSQLENLVELTLSYNLLQGPIPASLGNLKNLTKLNLPGNQLNGTLPETLGSLPELSVLD  457 (1009)
Q Consensus       378 l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~  457 (1009)
                      +.+++.+++++|.+. .+|+.++.+..|+.++..+|+++ ..|+.+.++.+|..+++.+|+++...|..+ +++.|++||
T Consensus       113 ~~~l~~l~~s~n~~~-el~~~i~~~~~l~dl~~~~N~i~-slp~~~~~~~~l~~l~~~~n~l~~l~~~~i-~m~~L~~ld  189 (565)
T KOG0472|consen  113 LISLVKLDCSSNELK-ELPDSIGRLLDLEDLDATNNQIS-SLPEDMVNLSKLSKLDLEGNKLKALPENHI-AMKRLKHLD  189 (565)
T ss_pred             hhhhhhhhcccccee-ecCchHHHHhhhhhhhccccccc-cCchHHHHHHHHHHhhccccchhhCCHHHH-HHHHHHhcc
Confidence            667777777777776 55666777777777777777776 456667777777777777777774433333 377777777


Q ss_pred             ccCcccccccchhhhccCCCCcEEeCCCCcccccCCCCCCCCccccEEecccCcCCCCCCcccccCCCccEEEccCCccc
Q 036375          458 VSSNSLTGIISEIHFSRLSKLKFLGLSSNSFILNVSSSWIPPFQVQSLNMRSCQLGPSFPSWLKTQQGVSFLDFSNASIS  537 (1009)
Q Consensus       458 Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~ls~n~i~  537 (1009)
                      ...|.++. +|+ .++.+.+|+.|++..|++..                         .| .|..+..|+++.++.|+|.
T Consensus       190 ~~~N~L~t-lP~-~lg~l~~L~~LyL~~Nki~~-------------------------lP-ef~gcs~L~Elh~g~N~i~  241 (565)
T KOG0472|consen  190 CNSNLLET-LPP-ELGGLESLELLYLRRNKIRF-------------------------LP-EFPGCSLLKELHVGENQIE  241 (565)
T ss_pred             cchhhhhc-CCh-hhcchhhhHHHHhhhccccc-------------------------CC-CCCccHHHHHHHhcccHHH
Confidence            77777653 333 26666666666666665521                         12 2333334444444444333


Q ss_pred             CCCCchhhhccCcccEEEeccccccccCCCCCCCCCcCeEeccCCCCCCCCCCCCCCccEEEccCCcCCCcCCchhhcCC
Q 036375          538 GPIPNWFWDISSKLSLLNVSLNQLQGQLPNPLNIAPFADVDFRSNLLEGPIPLPIVEIELLDLSNNHFSGPIPQNISGSM  617 (1009)
Q Consensus       538 ~~~p~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~~l~~l~l~~n~l~~~~~~~~~~L~~L~Ls~n~l~~~ip~~~~~~l  617 (1009)
                       .+|......+                                            .++.+||+..|+++ +.|++++ .+
T Consensus       242 -~lpae~~~~L--------------------------------------------~~l~vLDLRdNklk-e~Pde~c-lL  274 (565)
T KOG0472|consen  242 -MLPAEHLKHL--------------------------------------------NSLLVLDLRDNKLK-EVPDEIC-LL  274 (565)
T ss_pred             -hhHHHHhccc--------------------------------------------ccceeeeccccccc-cCchHHH-Hh
Confidence             2222222222                                            22333333333333 4454443 24


Q ss_pred             CCccEEEccCCcccccCCcccccCCCCCeEEccCCcCCccCcCcccCC--CCCCEEE-------CCCCcC----ccc-CC
Q 036375          618 PNLIFLSVSGNRLTGKIPGSIGEMQLLQVIDLSRNSISGSISSSIGNC--TFLKVLD-------LSYSSL----SGV-IP  683 (1009)
Q Consensus       618 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l--~~L~~L~-------Ls~N~l----~~~-~p  683 (1009)
                      .+|++||+|+|.+++ .|..++++ .|+.|.+.+|.+..+-.+.+..-  .-|++|.       ++.-+=    ... .+
T Consensus       275 rsL~rLDlSNN~is~-Lp~sLgnl-hL~~L~leGNPlrTiRr~ii~~gT~~vLKyLrs~~~~dglS~se~~~e~~~t~~~  352 (565)
T KOG0472|consen  275 RSLERLDLSNNDISS-LPYSLGNL-HLKFLALEGNPLRTIRREIISKGTQEVLKYLRSKIKDDGLSQSEGGTETAMTLPS  352 (565)
T ss_pred             hhhhhhcccCCcccc-CCcccccc-eeeehhhcCCchHHHHHHHHcccHHHHHHHHHHhhccCCCCCCcccccccCCCCC
Confidence            555555555555553 33445555 55555555555432111100000  0011110       000000    000 11


Q ss_pred             cc---ccCCCCCCEEEccCccccCCCchhhcCCCC---CCEEECcCCcccccCchhhhhcCcCCc-EEEccCCcccccCC
Q 036375          684 AS---LGQLTRLQSLHLNNNKLTGNLPSSFQNLTS---LETLDLGNNRFSGNIPSLLGNGFVGLR-ILSLRSNAFSGEIP  756 (1009)
Q Consensus       684 ~~---~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~---L~~L~L~~N~l~~~ip~~l~~~l~~L~-~L~L~~N~l~~~~p  756 (1009)
                      ..   .....+.+.|+++.-+++ .+|.....-..   .+..+++.|++. ++|..+.. +..+. .+.+++|.++ .+|
T Consensus       353 ~~~~~~~~~i~tkiL~~s~~qlt-~VPdEVfea~~~~~Vt~VnfskNqL~-elPk~L~~-lkelvT~l~lsnn~is-fv~  428 (565)
T KOG0472|consen  353 ESFPDIYAIITTKILDVSDKQLT-LVPDEVFEAAKSEIVTSVNFSKNQLC-ELPKRLVE-LKELVTDLVLSNNKIS-FVP  428 (565)
T ss_pred             Ccccchhhhhhhhhhcccccccc-cCCHHHHHHhhhcceEEEecccchHh-hhhhhhHH-HHHHHHHHHhhcCccc-cch
Confidence            11   123456788888888888 45655433333   778899999987 88887654 44443 4455556554 788


Q ss_pred             cccCCCCCCCEEEccCCcCCCCCChhhhhhhhhhhccchhhhhhccccccceeeceEEEeecCCCCCCCCceeEEEccCC
Q 036375          757 SKLSNLSSLQVLDLAENNLTGSIPGSVGDLKAMAHVQNIVKYLLFGRYRGIYYEENLVINTKGSSKDTPRLFHFIDLSGN  836 (1009)
Q Consensus       757 ~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~Ls~N  836 (1009)
                      ..++.+++|..|+|++|.+. .+|..++.+..|                                       +.||+|.|
T Consensus       429 ~~l~~l~kLt~L~L~NN~Ln-~LP~e~~~lv~L---------------------------------------q~LnlS~N  468 (565)
T KOG0472|consen  429 LELSQLQKLTFLDLSNNLLN-DLPEEMGSLVRL---------------------------------------QTLNLSFN  468 (565)
T ss_pred             HHHHhhhcceeeecccchhh-hcchhhhhhhhh---------------------------------------heeccccc
Confidence            88899999999999988887 678888887776                                       88999999


Q ss_pred             ccCCCCCccccCcCCCCeEEccCCcccccCCCCccCCCCCCEEeCCCCcCCCCCcccccCCCCCCeEeCCCCcce
Q 036375          837 NLHGDFPTQLTKLVGLVVLNLSRNHIGGQIPENISGLHQLASLDLSSNNLSGGIPSSLSSLSFLGYINLSRNQLS  911 (1009)
Q Consensus       837 ~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~ls~N~l~  911 (1009)
                      +|. .+|..+..+..++.+-.++|++....|+.+.+|.+|..|||.+|.+. .||..+++|++|++|++++|++.
T Consensus       469 rFr-~lP~~~y~lq~lEtllas~nqi~~vd~~~l~nm~nL~tLDL~nNdlq-~IPp~LgnmtnL~hLeL~gNpfr  541 (565)
T KOG0472|consen  469 RFR-MLPECLYELQTLETLLASNNQIGSVDPSGLKNMRNLTTLDLQNNDLQ-QIPPILGNMTNLRHLELDGNPFR  541 (565)
T ss_pred             ccc-cchHHHhhHHHHHHHHhccccccccChHHhhhhhhcceeccCCCchh-hCChhhccccceeEEEecCCccC
Confidence            887 78988888888888888889999888888999999999999999998 68999999999999999999997

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]

Probab=100.00  E-value=2.3e-37  Score=314.59  Aligned_cols=453  Identities=27%  Similarity=0.432  Sum_probs=266.9

Q ss_pred             hhcCCCCcEEEccCCcCcccCCcccCCCCCCCEEEcCCCCCCCCcccccccCCCCCccEEEcccccccccCCccccCCCC
Q 036375          243 LVNISTLVYVDLSDCDLYGRIPIGFGELPNLQYLSLAGNNNLSGSCSQLFRGSWKKIQILNFASNKLHGKLPSSVANMTS  322 (1009)
Q Consensus       243 l~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~l~~l~~  322 (1009)
                      +.++..|.+|++++|++. ..|++++++..++.++.+.|+.   ..+|..++...+++.+++++|.+. .+|++++.+..
T Consensus        64 l~nL~~l~vl~~~~n~l~-~lp~aig~l~~l~~l~vs~n~l---s~lp~~i~s~~~l~~l~~s~n~~~-el~~~i~~~~~  138 (565)
T KOG0472|consen   64 LKNLACLTVLNVHDNKLS-QLPAAIGELEALKSLNVSHNKL---SELPEQIGSLISLVKLDCSSNELK-ELPDSIGRLLD  138 (565)
T ss_pred             hhcccceeEEEeccchhh-hCCHHHHHHHHHHHhhcccchH---hhccHHHhhhhhhhhhhcccccee-ecCchHHHHhh
Confidence            444555555555555553 3344555555555555555421   122222222223333333333333 44555555556


Q ss_pred             CCEEEccCCcccccCchhhhcccCCCEEEcCCCcCCCCCCccccccccccCCCCCCCCCcEEECcCCcCcccCChhhcCC
Q 036375          323 LTNFDLFDKKVEGGIPSSIARLCYLKEFDLSGNNLTGSLPEILQGTDLCVSSNSPLPSLISMRLGNNHLKGKLPEWLSQL  402 (1009)
Q Consensus       323 L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l  402 (1009)
                      |+.++..+|++. ..|+++..+.+|..+++.+|++....|..+                                   ++
T Consensus       139 l~dl~~~~N~i~-slp~~~~~~~~l~~l~~~~n~l~~l~~~~i-----------------------------------~m  182 (565)
T KOG0472|consen  139 LEDLDATNNQIS-SLPEDMVNLSKLSKLDLEGNKLKALPENHI-----------------------------------AM  182 (565)
T ss_pred             hhhhhccccccc-cCchHHHHHHHHHHhhccccchhhCCHHHH-----------------------------------HH
Confidence            666666655555 355555555555555555555543333322                                   25


Q ss_pred             CCCCEEeCcCCcccccCCCCCCCCCCCcEEeCCCCcCCCCCCcccCCCCCCCEEEccCcccccccchhhhccCCCCcEEe
Q 036375          403 ENLVELTLSYNLLQGPIPASLGNLKNLTKLNLPGNQLNGTLPETLGSLPELSVLDVSSNSLTGIISEIHFSRLSKLKFLG  482 (1009)
Q Consensus       403 ~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~  482 (1009)
                      +.|++||...|-+. .+|..++.+.+|+.|++..|++. ..| .|..|..|++++++.|.+. .++.....+++++.+||
T Consensus       183 ~~L~~ld~~~N~L~-tlP~~lg~l~~L~~LyL~~Nki~-~lP-ef~gcs~L~Elh~g~N~i~-~lpae~~~~L~~l~vLD  258 (565)
T KOG0472|consen  183 KRLKHLDCNSNLLE-TLPPELGGLESLELLYLRRNKIR-FLP-EFPGCSLLKELHVGENQIE-MLPAEHLKHLNSLLVLD  258 (565)
T ss_pred             HHHHhcccchhhhh-cCChhhcchhhhHHHHhhhcccc-cCC-CCCccHHHHHHHhcccHHH-hhHHHHhcccccceeee
Confidence            55555555555444 44445555555555555555554 333 4555555555555555554 33444445555555555


Q ss_pred             CCCCcccccCCCCCCCCccccEEecccCcCCCCCCcccccCCCccEEEccCCcccCCCCchhhhccCcccEEEecccccc
Q 036375          483 LSSNSFILNVSSSWIPPFQVQSLNMRSCQLGPSFPSWLKTQQGVSFLDFSNASISGPIPNWFWDISSKLSLLNVSLNQLQ  562 (1009)
Q Consensus       483 L~~n~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~ls~n~i~~~~p~~~~~~~~~L~~L~ls~n~l~  562 (1009)
                      +.+|++.                         ..|..+..+.+|.+||+|+|.|++ .|..++..  .|+.|.+.+|.+.
T Consensus       259 LRdNklk-------------------------e~Pde~clLrsL~rLDlSNN~is~-Lp~sLgnl--hL~~L~leGNPlr  310 (565)
T KOG0472|consen  259 LRDNKLK-------------------------EVPDEICLLRSLERLDLSNNDISS-LPYSLGNL--HLKFLALEGNPLR  310 (565)
T ss_pred             ccccccc-------------------------cCchHHHHhhhhhhhcccCCcccc-CCcccccc--eeeehhhcCCchH
Confidence            5555542                         223333333334444444444432 22222211  3444444444332


Q ss_pred             ccCCCCCCCCC---cCeE-------eccCC---------CCCCCCCC--CCCCccEEEccCCcCCCcCCchhhcCCC--C
Q 036375          563 GQLPNPLNIAP---FADV-------DFRSN---------LLEGPIPL--PIVEIELLDLSNNHFSGPIPQNISGSMP--N  619 (1009)
Q Consensus       563 ~~~~~~~~~~~---l~~l-------~l~~n---------~l~~~~~~--~~~~L~~L~Ls~n~l~~~ip~~~~~~l~--~  619 (1009)
                      ..-.+.+....   ++++       .++..         ...+..|.  ...+.+.|+++.-+++ .+|+++|..-.  -
T Consensus       311 TiRr~ii~~gT~~vLKyLrs~~~~dglS~se~~~e~~~t~~~~~~~~~~~~i~tkiL~~s~~qlt-~VPdEVfea~~~~~  389 (565)
T KOG0472|consen  311 TIRREIISKGTQEVLKYLRSKIKDDGLSQSEGGTETAMTLPSESFPDIYAIITTKILDVSDKQLT-LVPDEVFEAAKSEI  389 (565)
T ss_pred             HHHHHHHcccHHHHHHHHHHhhccCCCCCCcccccccCCCCCCcccchhhhhhhhhhcccccccc-cCCHHHHHHhhhcc
Confidence            11000000000   0000       00000         00111111  2256788999999998 89998886543  3


Q ss_pred             ccEEEccCCcccccCCcccccCCCCCe-EEccCCcCCccCcCcccCCCCCCEEECCCCcCcccCCccccCCCCCCEEEcc
Q 036375          620 LIFLSVSGNRLTGKIPGSIGEMQLLQV-IDLSRNSISGSISSSIGNCTFLKVLDLSYSSLSGVIPASLGQLTRLQSLHLN  698 (1009)
Q Consensus       620 L~~L~Ls~n~l~~~~~~~~~~l~~L~~-L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~  698 (1009)
                      .+..+++.|++. .+|..+..++.+++ +.+++|.+ +.+|..++.+++|..|+|++|-+. .+|..++.+..|+.|+++
T Consensus       390 Vt~VnfskNqL~-elPk~L~~lkelvT~l~lsnn~i-sfv~~~l~~l~kLt~L~L~NN~Ln-~LP~e~~~lv~Lq~LnlS  466 (565)
T KOG0472|consen  390 VTSVNFSKNQLC-ELPKRLVELKELVTDLVLSNNKI-SFVPLELSQLQKLTFLDLSNNLLN-DLPEEMGSLVRLQTLNLS  466 (565)
T ss_pred             eEEEecccchHh-hhhhhhHHHHHHHHHHHhhcCcc-ccchHHHHhhhcceeeecccchhh-hcchhhhhhhhhheeccc
Confidence            778999999998 56777766666655 45555555 488889999999999999999888 688889999999999999


Q ss_pred             CccccCCCchhhcCCCCCCEEECcCCcccccCchh-hhhcCcCCcEEEccCCcccccCCcccCCCCCCCEEEccCCcCC
Q 036375          699 NNKLTGNLPSSFQNLTSLETLDLGNNRFSGNIPSL-LGNGFVGLRILSLRSNAFSGEIPSKLSNLSSLQVLDLAENNLT  776 (1009)
Q Consensus       699 ~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~ip~~-l~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~  776 (1009)
                      .|+|. .+|.....+..++++-.++|++. .++.. +. ++.+|..||+.+|.+. .+|..++++++|++|++++|+|.
T Consensus       467 ~NrFr-~lP~~~y~lq~lEtllas~nqi~-~vd~~~l~-nm~nL~tLDL~nNdlq-~IPp~LgnmtnL~hLeL~gNpfr  541 (565)
T KOG0472|consen  467 FNRFR-MLPECLYELQTLETLLASNNQIG-SVDPSGLK-NMRNLTTLDLQNNDLQ-QIPPILGNMTNLRHLELDGNPFR  541 (565)
T ss_pred             ccccc-cchHHHhhHHHHHHHHhcccccc-ccChHHhh-hhhhcceeccCCCchh-hCChhhccccceeEEEecCCccC
Confidence            99998 78999888888998888889997 56555 65 5999999999999998 88999999999999999999998

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]

Probab=99.98  E-value=7.5e-35  Score=326.22  Aligned_cols=438  Identities=30%  Similarity=0.399  Sum_probs=239.5

Q ss_pred             CcEEECcCCcCcccCChhhcCCCCCCEEeCcCCcccccCCCCCCCCCCCcEEeCCCCcCCCCCCcccCCCCCCCEEEccC
Q 036375          381 LISMRLGNNHLKGKLPEWLSQLENLVELTLSYNLLQGPIPASLGNLKNLTKLNLPGNQLNGTLPETLGSLPELSVLDVSS  460 (1009)
Q Consensus       381 L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~  460 (1009)
                      |+.|++++|++. ..|..+..+.+|+.|+++.|.+. ..|.+..++.+|+++.|.+|.+. ..|..+..+.+|+.|+++.
T Consensus        47 L~~l~lsnn~~~-~fp~~it~l~~L~~ln~s~n~i~-~vp~s~~~~~~l~~lnL~~n~l~-~lP~~~~~lknl~~LdlS~  123 (1081)
T KOG0618|consen   47 LKSLDLSNNQIS-SFPIQITLLSHLRQLNLSRNYIR-SVPSSCSNMRNLQYLNLKNNRLQ-SLPASISELKNLQYLDLSF  123 (1081)
T ss_pred             eEEeeccccccc-cCCchhhhHHHHhhcccchhhHh-hCchhhhhhhcchhheeccchhh-cCchhHHhhhcccccccch
Confidence            555555555555 45555566666666666666655 44555666666666666666655 5566666666666666666


Q ss_pred             cccccccchhhhccCCCCcEEeCCCCcccccCCCCCCCCccccEEecccCcCCCCCCcccccCCCccEEEccCCcccCCC
Q 036375          461 NSLTGIISEIHFSRLSKLKFLGLSSNSFILNVSSSWIPPFQVQSLNMRSCQLGPSFPSWLKTQQGVSFLDFSNASISGPI  540 (1009)
Q Consensus       461 n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~ls~n~i~~~~  540 (1009)
                      |.+.. +|. .+..+..++.+..++|.....     .+-..++.+++..+.+.+.++.....++.  .+|+.+|.+. ..
T Consensus       124 N~f~~-~Pl-~i~~lt~~~~~~~s~N~~~~~-----lg~~~ik~~~l~~n~l~~~~~~~i~~l~~--~ldLr~N~~~-~~  193 (1081)
T KOG0618|consen  124 NHFGP-IPL-VIEVLTAEEELAASNNEKIQR-----LGQTSIKKLDLRLNVLGGSFLIDIYNLTH--QLDLRYNEME-VL  193 (1081)
T ss_pred             hccCC-Cch-hHHhhhHHHHHhhhcchhhhh-----hccccchhhhhhhhhcccchhcchhhhhe--eeecccchhh-hh
Confidence            66652 333 255556666666666611111     11112666777777777777766666665  6888888776 21


Q ss_pred             CchhhhccCcccEEEeccccccccCCCCCCCCCcCeEeccCCCCCCCCCCCCCCccEEEccCCcCCCcCCchhhcCCCCc
Q 036375          541 PNWFWDISSKLSLLNVSLNQLQGQLPNPLNIAPFADVDFRSNLLEGPIPLPIVEIELLDLSNNHFSGPIPQNISGSMPNL  620 (1009)
Q Consensus       541 p~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~~l~~l~l~~n~l~~~~~~~~~~L~~L~Ls~n~l~~~ip~~~~~~l~~L  620 (1009)
                         -...+.+++.+....|++....   ...                     ++++.|+.++|.++...+   .....+|
T Consensus       194 ---dls~~~~l~~l~c~rn~ls~l~---~~g---------------------~~l~~L~a~~n~l~~~~~---~p~p~nl  243 (1081)
T KOG0618|consen  194 ---DLSNLANLEVLHCERNQLSELE---ISG---------------------PSLTALYADHNPLTTLDV---HPVPLNL  243 (1081)
T ss_pred             ---hhhhccchhhhhhhhcccceEE---ecC---------------------cchheeeeccCcceeecc---ccccccc
Confidence               1123466777777777665211   111                     344555555555541111   1123455


Q ss_pred             cEEEccCCcccccCCcccccCCCCCeEEccCCcCCccCcCcccCCCCCCEEECCCCcCcccCCccccCCCCCCEEEccCc
Q 036375          621 IFLSVSGNRLTGKIPGSIGEMQLLQVIDLSRNSISGSISSSIGNCTFLKVLDLSYSSLSGVIPASLGQLTRLQSLHLNNN  700 (1009)
Q Consensus       621 ~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N  700 (1009)
                      ++++++.|++++.. .+++.+.+|+.++..+|+++ .+|..+...++|+.|...+|.+. -+|....+++.|++|+|..|
T Consensus       244 ~~~dis~n~l~~lp-~wi~~~~nle~l~~n~N~l~-~lp~ri~~~~~L~~l~~~~nel~-yip~~le~~~sL~tLdL~~N  320 (1081)
T KOG0618|consen  244 QYLDISHNNLSNLP-EWIGACANLEALNANHNRLV-ALPLRISRITSLVSLSAAYNELE-YIPPFLEGLKSLRTLDLQSN  320 (1081)
T ss_pred             eeeecchhhhhcch-HHHHhcccceEecccchhHH-hhHHHHhhhhhHHHHHhhhhhhh-hCCCcccccceeeeeeehhc
Confidence            55555555555333 55555556666666665553 44555555555666666666555 33444455556666666666


Q ss_pred             cccCCCchh-hcCCCC-CCEEECcCCcccccCchhhhhcCcCCcEEEccCCcccccCCcccCCCCCCCEEEccCCcCCCC
Q 036375          701 KLTGNLPSS-FQNLTS-LETLDLGNNRFSGNIPSLLGNGFVGLRILSLRSNAFSGEIPSKLSNLSSLQVLDLAENNLTGS  778 (1009)
Q Consensus       701 ~l~~~~p~~-~~~l~~-L~~L~L~~N~l~~~ip~~l~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~  778 (1009)
                      ++.. .|.. +.-... |+.|+.+.|++. ..|..-....+.|+.|++.+|.++......+.+..+|++|+|++|++...
T Consensus       321 ~L~~-lp~~~l~v~~~~l~~ln~s~n~l~-~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNrL~~f  398 (1081)
T KOG0618|consen  321 NLPS-LPDNFLAVLNASLNTLNVSSNKLS-TLPSYEENNHAALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYNRLNSF  398 (1081)
T ss_pred             cccc-cchHHHhhhhHHHHHHhhhhcccc-ccccccchhhHHHHHHHHhcCcccccchhhhccccceeeeeecccccccC
Confidence            6552 3322 222222 455555555554 44433333345566666666666655555556666666666666666533


Q ss_pred             CChhhhhhhhhhhccchhhhhhccccccceeeceEEEeecCCCCCCCCceeEEEccCCccCCCCCccccCcCCCCeEEcc
Q 036375          779 IPGSVGDLKAMAHVQNIVKYLLFGRYRGIYYEENLVINTKGSSKDTPRLFHFIDLSGNNLHGDFPTQLTKLVGLVVLNLS  858 (1009)
Q Consensus       779 ~p~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls  858 (1009)
                      ....+.++..|                                       +.|+||+|.++ .+|.++.++..|++|...
T Consensus       399 pas~~~kle~L---------------------------------------eeL~LSGNkL~-~Lp~tva~~~~L~tL~ah  438 (1081)
T KOG0618|consen  399 PASKLRKLEEL---------------------------------------EELNLSGNKLT-TLPDTVANLGRLHTLRAH  438 (1081)
T ss_pred             CHHHHhchHHh---------------------------------------HHHhcccchhh-hhhHHHHhhhhhHHHhhc
Confidence            33344444444                                       55566666666 455666666666666666


Q ss_pred             CCcccccCCCCccCCCCCCEEeCCCCcCCCC-CcccccCCCCCCeEeCCCCc
Q 036375          859 RNHIGGQIPENISGLHQLASLDLSSNNLSGG-IPSSLSSLSFLGYINLSRNQ  909 (1009)
Q Consensus       859 ~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~-ip~~l~~l~~L~~L~ls~N~  909 (1009)
                      +|++. ..| .+.++++|+.+|+|.|+|+.. +|..... +.|++||+++|.
T Consensus       439 sN~l~-~fP-e~~~l~qL~~lDlS~N~L~~~~l~~~~p~-p~LkyLdlSGN~  487 (1081)
T KOG0618|consen  439 SNQLL-SFP-ELAQLPQLKVLDLSCNNLSEVTLPEALPS-PNLKYLDLSGNT  487 (1081)
T ss_pred             CCcee-ech-hhhhcCcceEEecccchhhhhhhhhhCCC-cccceeeccCCc
Confidence            66665 333 556666666666666666532 3333222 556666666664

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]

Probab=99.97  E-value=2.9e-34  Score=321.52  Aligned_cols=462  Identities=28%  Similarity=0.399  Sum_probs=310.8

Q ss_pred             ccEEEcccccccccCCccccCCCCCCEEEccCCcccccCchhhhcccCCCEEEcCCCcCCCCCCccccccccccCCCCCC
Q 036375          299 IQILNFASNKLHGKLPSSVANMTSLTNFDLFDKKVEGGIPSSIARLCYLKEFDLSGNNLTGSLPEILQGTDLCVSSNSPL  378 (1009)
Q Consensus       299 L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~l  378 (1009)
                      |+.|++++|.+. ..|..+..+.+|+.|+++.|.+. ..|.+..++.+|+++.|.+|.+. ..|..+.          .+
T Consensus        47 L~~l~lsnn~~~-~fp~~it~l~~L~~ln~s~n~i~-~vp~s~~~~~~l~~lnL~~n~l~-~lP~~~~----------~l  113 (1081)
T KOG0618|consen   47 LKSLDLSNNQIS-SFPIQITLLSHLRQLNLSRNYIR-SVPSSCSNMRNLQYLNLKNNRLQ-SLPASIS----------EL  113 (1081)
T ss_pred             eEEeeccccccc-cCCchhhhHHHHhhcccchhhHh-hCchhhhhhhcchhheeccchhh-cCchhHH----------hh
Confidence            444444444433 34444555555555555555544 34445555555555555555443 2222222          34


Q ss_pred             CCCcEEECcCCcCcccCChhhcCCCCCCEEeCcCCcccccCCCCCCCCCCCcEEeCCCCcCCCCCCcccCCCCCCCEEEc
Q 036375          379 PSLISMRLGNNHLKGKLPEWLSQLENLVELTLSYNLLQGPIPASLGNLKNLTKLNLPGNQLNGTLPETLGSLPELSVLDV  458 (1009)
Q Consensus       379 ~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L  458 (1009)
                      .+|+.|+++.|.+. .+|..+..++.+++++.++|.....    ++... ++.+++..|.+.+.++..+..+..  .|+|
T Consensus       114 knl~~LdlS~N~f~-~~Pl~i~~lt~~~~~~~s~N~~~~~----lg~~~-ik~~~l~~n~l~~~~~~~i~~l~~--~ldL  185 (1081)
T KOG0618|consen  114 KNLQYLDLSFNHFG-PIPLVIEVLTAEEELAASNNEKIQR----LGQTS-IKKLDLRLNVLGGSFLIDIYNLTH--QLDL  185 (1081)
T ss_pred             hcccccccchhccC-CCchhHHhhhHHHHHhhhcchhhhh----hcccc-chhhhhhhhhcccchhcchhhhhe--eeec
Confidence            45555555555554 5555666666666667766622212    22222 666677777766666666655555  5777


Q ss_pred             cCcccccccchhhhccCCCCcEEeCCCCcccccCCCCCCCCccccEEecccCcCCCCCCcccccCCCccEEEccCCcccC
Q 036375          459 SSNSLTGIISEIHFSRLSKLKFLGLSSNSFILNVSSSWIPPFQVQSLNMRSCQLGPSFPSWLKTQQGVSFLDFSNASISG  538 (1009)
Q Consensus       459 s~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~ls~n~i~~  538 (1009)
                      ++|.+. .   ..+..+.+|+.+....|++..                                      ++++      
T Consensus       186 r~N~~~-~---~dls~~~~l~~l~c~rn~ls~--------------------------------------l~~~------  217 (1081)
T KOG0618|consen  186 RYNEME-V---LDLSNLANLEVLHCERNQLSE--------------------------------------LEIS------  217 (1081)
T ss_pred             ccchhh-h---hhhhhccchhhhhhhhcccce--------------------------------------EEec------
Confidence            777665 1   135566666666666664421                                      1110      


Q ss_pred             CCCchhhhccCcccEEEeccccccccCCCCCCCCCcCeEeccCCCCCCCCCCCCCCccEEEccCCcCCCcCCchhhcCCC
Q 036375          539 PIPNWFWDISSKLSLLNVSLNQLQGQLPNPLNIAPFADVDFRSNLLEGPIPLPIVEIELLDLSNNHFSGPIPQNISGSMP  618 (1009)
Q Consensus       539 ~~p~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~~l~~l~l~~n~l~~~~~~~~~~L~~L~Ls~n~l~~~ip~~~~~~l~  618 (1009)
                               .++++.|+.+.|.++...+..                      ...+++++++++|+++ .+| ++...+.
T Consensus       218 ---------g~~l~~L~a~~n~l~~~~~~p----------------------~p~nl~~~dis~n~l~-~lp-~wi~~~~  264 (1081)
T KOG0618|consen  218 ---------GPSLTALYADHNPLTTLDVHP----------------------VPLNLQYLDISHNNLS-NLP-EWIGACA  264 (1081)
T ss_pred             ---------CcchheeeeccCcceeecccc----------------------ccccceeeecchhhhh-cch-HHHHhcc
Confidence                     134444444444443111111                      1257888888888888 677 7788899


Q ss_pred             CccEEEccCCcccccCCcccccCCCCCeEEccCCcCCccCcCcccCCCCCCEEECCCCcCcccCCccccCCCC-CCEEEc
Q 036375          619 NLIFLSVSGNRLTGKIPGSIGEMQLLQVIDLSRNSISGSISSSIGNCTFLKVLDLSYSSLSGVIPASLGQLTR-LQSLHL  697 (1009)
Q Consensus       619 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~-L~~L~L  697 (1009)
                      +|+.++..+|+++ .+|..+...++|+.|++.+|.+. -+|......+.|+.|+|..|++....+..+..... |..|+.
T Consensus       265 nle~l~~n~N~l~-~lp~ri~~~~~L~~l~~~~nel~-yip~~le~~~sL~tLdL~~N~L~~lp~~~l~v~~~~l~~ln~  342 (1081)
T KOG0618|consen  265 NLEALNANHNRLV-ALPLRISRITSLVSLSAAYNELE-YIPPFLEGLKSLRTLDLQSNNLPSLPDNFLAVLNASLNTLNV  342 (1081)
T ss_pred             cceEecccchhHH-hhHHHHhhhhhHHHHHhhhhhhh-hCCCcccccceeeeeeehhccccccchHHHhhhhHHHHHHhh
Confidence            9999999999995 67777778899999999999998 56777888999999999999998544444444443 788888


Q ss_pred             cCccccCCCchhhcCCCCCCEEECcCCcccccCchhhhhcCcCCcEEEccCCcccccCCcccCCCCCCCEEEccCCcCCC
Q 036375          698 NNNKLTGNLPSSFQNLTSLETLDLGNNRFSGNIPSLLGNGFVGLRILSLRSNAFSGEIPSKLSNLSSLQVLDLAENNLTG  777 (1009)
Q Consensus       698 ~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~ip~~l~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~  777 (1009)
                      +.|++.......=...+.|+.|.+.+|.++...-..+. +...|++|+|++|++.......+.++..|++|+||+|+++ 
T Consensus       343 s~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l~-~~~hLKVLhLsyNrL~~fpas~~~kle~LeeL~LSGNkL~-  420 (1081)
T KOG0618|consen  343 SSNKLSTLPSYEENNHAALQELYLANNHLTDSCFPVLV-NFKHLKVLHLSYNRLNSFPASKLRKLEELEELNLSGNKLT-  420 (1081)
T ss_pred             hhccccccccccchhhHHHHHHHHhcCcccccchhhhc-cccceeeeeecccccccCCHHHHhchHHhHHHhcccchhh-
Confidence            88888743322223456799999999999977666655 5899999999999998444456889999999999999998 


Q ss_pred             CCChhhhhhhhhhhccchhhhhhccccccceeeceEEEeecCCCCCCCCceeEEEccCCccCCCCCccccCcCCCCeEEc
Q 036375          778 SIPGSVGDLKAMAHVQNIVKYLLFGRYRGIYYEENLVINTKGSSKDTPRLFHFIDLSGNNLHGDFPTQLTKLVGLVVLNL  857 (1009)
Q Consensus       778 ~~p~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L  857 (1009)
                      .+|.++.++..|                                       +.|..-+|++. ..| ++..+++|+.+|+
T Consensus       421 ~Lp~tva~~~~L---------------------------------------~tL~ahsN~l~-~fP-e~~~l~qL~~lDl  459 (1081)
T KOG0618|consen  421 TLPDTVANLGRL---------------------------------------HTLRAHSNQLL-SFP-ELAQLPQLKVLDL  459 (1081)
T ss_pred             hhhHHHHhhhhh---------------------------------------HHHhhcCCcee-ech-hhhhcCcceEEec
Confidence            778999888888                                       55667778776 566 8999999999999


Q ss_pred             cCCccccc-CCCCccCCCCCCEEeCCCCcCCCCCcccccCCCCCCeEeCCCC
Q 036375          858 SRNHIGGQ-IPENISGLHQLASLDLSSNNLSGGIPSSLSSLSFLGYINLSRN  908 (1009)
Q Consensus       858 s~N~l~~~-~p~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~ls~N  908 (1009)
                      |.|+++.. +|..... ++|++|||++|.=.-..-..|..++++..+++.-|
T Consensus       460 S~N~L~~~~l~~~~p~-p~LkyLdlSGN~~l~~d~~~l~~l~~l~~~~i~~~  510 (1081)
T KOG0618|consen  460 SCNNLSEVTLPEALPS-PNLKYLDLSGNTRLVFDHKTLKVLKSLSQMDITLN  510 (1081)
T ss_pred             ccchhhhhhhhhhCCC-cccceeeccCCcccccchhhhHHhhhhhheecccC
Confidence            99999865 4444333 89999999999854455677888888888888877

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]

Probab=99.96  E-value=4e-32  Score=289.78  Aligned_cols=277  Identities=29%  Similarity=0.441  Sum_probs=208.0

Q ss_pred             CCccEEEccCCcCCCcCCchhhcCCCCccEEEccCCcccccCCcccccCCCCCeEEccCCcCCccCcCcccCCCCCCEEE
Q 036375          593 VEIELLDLSNNHFSGPIPQNISGSMPNLIFLSVSGNRLTGKIPGSIGEMQLLQVIDLSRNSISGSISSSIGNCTFLKVLD  672 (1009)
Q Consensus       593 ~~L~~L~Ls~n~l~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~  672 (1009)
                      .++-.|+||+|++. .||..+|.+++.|-+||||+|++. ..|..+..+..|++|+|++|.+....-..+..+++|+.|.
T Consensus       126 Kn~iVLNLS~N~Ie-tIPn~lfinLtDLLfLDLS~NrLe-~LPPQ~RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLh  203 (1255)
T KOG0444|consen  126 KNSIVLNLSYNNIE-TIPNSLFINLTDLLFLDLSNNRLE-MLPPQIRRLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLH  203 (1255)
T ss_pred             cCcEEEEcccCccc-cCCchHHHhhHhHhhhccccchhh-hcCHHHHHHhhhhhhhcCCChhhHHHHhcCccchhhhhhh
Confidence            45667788888886 899999999999999999999988 4566788888999999999987654444566677888888


Q ss_pred             CCCCcCc-ccCCccccCCCCCCEEEccCccccCCCchhhcCCCCCCEEECcCCcccccCchhhhhcCcCCcEEEccCCcc
Q 036375          673 LSYSSLS-GVIPASLGQLTRLQSLHLNNNKLTGNLPSSFQNLTSLETLDLGNNRFSGNIPSLLGNGFVGLRILSLRSNAF  751 (1009)
Q Consensus       673 Ls~N~l~-~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~ip~~l~~~l~~L~~L~L~~N~l  751 (1009)
                      +++.+-+ .-+|.++..+.+|..+|++.|.+. ..|+.+..+++|+.|+|++|+++ .+...... ..+|+.|+++.|++
T Consensus       204 ms~TqRTl~N~Ptsld~l~NL~dvDlS~N~Lp-~vPecly~l~~LrrLNLS~N~it-eL~~~~~~-W~~lEtLNlSrNQL  280 (1255)
T KOG0444|consen  204 MSNTQRTLDNIPTSLDDLHNLRDVDLSENNLP-IVPECLYKLRNLRRLNLSGNKIT-ELNMTEGE-WENLETLNLSRNQL  280 (1255)
T ss_pred             cccccchhhcCCCchhhhhhhhhccccccCCC-cchHHHhhhhhhheeccCcCcee-eeeccHHH-Hhhhhhhccccchh
Confidence            8876543 347888888888888899888888 78888888888888888888887 55554443 56788888888888


Q ss_pred             cccCCcccCCCCCCCEEEccCCcCCC-CCChhhhhhhhhhhccchhhhhhccccccceeeceEEEeecCCCCCCCCceeE
Q 036375          752 SGEIPSKLSNLSSLQVLDLAENNLTG-SIPGSVGDLKAMAHVQNIVKYLLFGRYRGIYYEENLVINTKGSSKDTPRLFHF  830 (1009)
Q Consensus       752 ~~~~p~~l~~l~~L~~L~Ls~N~l~~-~~p~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  830 (1009)
                      + .+|..++.++.|+.|.+.+|+++- -||..++++..|                                       +.
T Consensus       281 t-~LP~avcKL~kL~kLy~n~NkL~FeGiPSGIGKL~~L---------------------------------------ev  320 (1255)
T KOG0444|consen  281 T-VLPDAVCKLTKLTKLYANNNKLTFEGIPSGIGKLIQL---------------------------------------EV  320 (1255)
T ss_pred             c-cchHHHhhhHHHHHHHhccCcccccCCccchhhhhhh---------------------------------------HH
Confidence            7 788888888888888888888763 367788888777                                       44


Q ss_pred             EEccCCccCCCCCccccCcCCCCeEEccCCcccccCCCCccCCCCCCEEeCCCCcCCCCCcccccCCCCCCeEeCCC---
Q 036375          831 IDLSGNNLHGDFPTQLTKLVGLVVLNLSRNHIGGQIPENISGLHQLASLDLSSNNLSGGIPSSLSSLSFLGYINLSR---  907 (1009)
Q Consensus       831 L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~ls~---  907 (1009)
                      +..++|.+. ..|+.+..+..|+.|.|++|++. ..|+++.-|+.|+.||+..|.---..|.-=..-++|+.-++..   
T Consensus       321 f~aanN~LE-lVPEglcRC~kL~kL~L~~NrLi-TLPeaIHlL~~l~vLDlreNpnLVMPPKP~da~~~lefYNIDFSLq  398 (1255)
T KOG0444|consen  321 FHAANNKLE-LVPEGLCRCVKLQKLKLDHNRLI-TLPEAIHLLPDLKVLDLRENPNLVMPPKPNDARKKLEFYNIDFSLQ  398 (1255)
T ss_pred             HHhhccccc-cCchhhhhhHHHHHhccccccee-echhhhhhcCCcceeeccCCcCccCCCCcchhhhcceeeecceehh
Confidence            556667665 67888888888888888888887 6678888888888888888854433333222224555544442   


Q ss_pred             C--cceecCCC
Q 036375          908 N--QLSGKIPF  916 (1009)
Q Consensus       908 N--~l~g~ip~  916 (1009)
                      +  +|.|..|.
T Consensus       399 ~QlrlAG~~pa  409 (1255)
T KOG0444|consen  399 HQLRLAGQMPA  409 (1255)
T ss_pred             hHHhhccCCcc
Confidence            2  34565553

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]

Probab=99.96  E-value=6.5e-32  Score=288.16  Aligned_cols=397  Identities=27%  Similarity=0.394  Sum_probs=262.3

Q ss_pred             CCCcEEECcCCcCc-ccCChhhcCCCCCCEEeCcCCcccccCCCCCCCCCCCcEEeCCCCcCCCCCCcccCCCCCCCEEE
Q 036375          379 PSLISMRLGNNHLK-GKLPEWLSQLENLVELTLSYNLLQGPIPASLGNLKNLTKLNLPGNQLNGTLPETLGSLPELSVLD  457 (1009)
Q Consensus       379 ~~L~~L~L~~n~l~-~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~  457 (1009)
                      |-.+-.++++|.++ +..|.....+++++.|.|...++. .+|+.++.+.+|++|.+++|++. .+...+..++.|+.+.
T Consensus         7 pFVrGvDfsgNDFsg~~FP~~v~qMt~~~WLkLnrt~L~-~vPeEL~~lqkLEHLs~~HN~L~-~vhGELs~Lp~LRsv~   84 (1255)
T KOG0444|consen    7 PFVRGVDFSGNDFSGDRFPHDVEQMTQMTWLKLNRTKLE-QVPEELSRLQKLEHLSMAHNQLI-SVHGELSDLPRLRSVI   84 (1255)
T ss_pred             ceeecccccCCcCCCCcCchhHHHhhheeEEEechhhhh-hChHHHHHHhhhhhhhhhhhhhH-hhhhhhccchhhHHHh
Confidence            33444455555554 234555555555555555555444 34555555555555555555554 2223344455555555


Q ss_pred             ccCcccccccchhhhccCCCCcEEeCCCCcccccCCCCCCCCccccEEecccCcCCCCCCcccccCCCccEEEccCCccc
Q 036375          458 VSSNSLTGIISEIHFSRLSKLKFLGLSSNSFILNVSSSWIPPFQVQSLNMRSCQLGPSFPSWLKTQQGVSFLDFSNASIS  537 (1009)
Q Consensus       458 Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~ls~n~i~  537 (1009)
                      +..|++.....+..+-.+..|..||+++|++.                         ..|..+...+++-.|++|+|+|.
T Consensus        85 ~R~N~LKnsGiP~diF~l~dLt~lDLShNqL~-------------------------EvP~~LE~AKn~iVLNLS~N~Ie  139 (1255)
T KOG0444|consen   85 VRDNNLKNSGIPTDIFRLKDLTILDLSHNQLR-------------------------EVPTNLEYAKNSIVLNLSYNNIE  139 (1255)
T ss_pred             hhccccccCCCCchhcccccceeeecchhhhh-------------------------hcchhhhhhcCcEEEEcccCccc
Confidence            55554432211112334444444444444432                         23444444455555666666654


Q ss_pred             CCCCchhhhccCcccEEEeccccccccCCCCCCCCCcCeEeccCCCCCCCCCCCCCCccEEEccCCcCCCcCCchhhcCC
Q 036375          538 GPIPNWFWDISSKLSLLNVSLNQLQGQLPNPLNIAPFADVDFRSNLLEGPIPLPIVEIELLDLSNNHFSGPIPQNISGSM  617 (1009)
Q Consensus       538 ~~~p~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~~l~~l~l~~n~l~~~~~~~~~~L~~L~Ls~n~l~~~ip~~~~~~l  617 (1009)
                       .||..++-.++.|-+                                            ||||+|++. .+|+.+ ..+
T Consensus       140 -tIPn~lfinLtDLLf--------------------------------------------LDLS~NrLe-~LPPQ~-RRL  172 (1255)
T KOG0444|consen  140 -TIPNSLFINLTDLLF--------------------------------------------LDLSNNRLE-MLPPQI-RRL  172 (1255)
T ss_pred             -cCCchHHHhhHhHhh--------------------------------------------hccccchhh-hcCHHH-HHH
Confidence             455555444444444                                            444444443 555544 457


Q ss_pred             CCccEEEccCCcccccCCcccccCCCCCeEEccCCcCC-ccCcCcccCCCCCCEEECCCCcCcccCCccccCCCCCCEEE
Q 036375          618 PNLIFLSVSGNRLTGKIPGSIGEMQLLQVIDLSRNSIS-GSISSSIGNCTFLKVLDLSYSSLSGVIPASLGQLTRLQSLH  696 (1009)
Q Consensus       618 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~-~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~  696 (1009)
                      ..|++|+|++|.+....-..+..+++|++|.+++.+-+ .-+|.++..+.+|..+|+|.|.+. ..|+++..+++|+.|+
T Consensus       173 ~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N~Lp-~vPecly~l~~LrrLN  251 (1255)
T KOG0444|consen  173 SMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSENNLP-IVPECLYKLRNLRRLN  251 (1255)
T ss_pred             hhhhhhhcCCChhhHHHHhcCccchhhhhhhcccccchhhcCCCchhhhhhhhhccccccCCC-cchHHHhhhhhhheec
Confidence            88999999999887554445556788889999886644 457888999999999999999998 7899999999999999


Q ss_pred             ccCccccCCCchhhcCCCCCCEEECcCCcccccCchhhhhcCcCCcEEEccCCccc-ccCCcccCCCCCCCEEEccCCcC
Q 036375          697 LNNNKLTGNLPSSFQNLTSLETLDLGNNRFSGNIPSLLGNGFVGLRILSLRSNAFS-GEIPSKLSNLSSLQVLDLAENNL  775 (1009)
Q Consensus       697 L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~ip~~l~~~l~~L~~L~L~~N~l~-~~~p~~l~~l~~L~~L~Ls~N~l  775 (1009)
                      |++|+++ .+........+|++|+++.|+++ .+|+.+.+ ++.|+.|.+.+|+++ .-+|+.++.+.+|+++..++|.+
T Consensus       252 LS~N~it-eL~~~~~~W~~lEtLNlSrNQLt-~LP~avcK-L~kL~kLy~n~NkL~FeGiPSGIGKL~~Levf~aanN~L  328 (1255)
T KOG0444|consen  252 LSGNKIT-ELNMTEGEWENLETLNLSRNQLT-VLPDAVCK-LTKLTKLYANNNKLTFEGIPSGIGKLIQLEVFHAANNKL  328 (1255)
T ss_pred             cCcCcee-eeeccHHHHhhhhhhccccchhc-cchHHHhh-hHHHHHHHhccCcccccCCccchhhhhhhHHHHhhcccc
Confidence            9999998 45556677788999999999998 89998886 999999999999876 34788999999999999999988


Q ss_pred             CCCCChhhhhhhhhhhccchhhhhhccccccceeeceEEEeecCCCCCCCCceeEEEccCCccCCCCCccccCcCCCCeE
Q 036375          776 TGSIPGSVGDLKAMAHVQNIVKYLLFGRYRGIYYEENLVINTKGSSKDTPRLFHFIDLSGNNLHGDFPTQLTKLVGLVVL  855 (1009)
Q Consensus       776 ~~~~p~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~Ls~N~l~~~~p~~l~~l~~L~~L  855 (1009)
                      . .+|+.++.+..|                                       +.|.|++|++- ..|+.+.-++.|+.|
T Consensus       329 E-lVPEglcRC~kL---------------------------------------~kL~L~~NrLi-TLPeaIHlL~~l~vL  367 (1255)
T KOG0444|consen  329 E-LVPEGLCRCVKL---------------------------------------QKLKLDHNRLI-TLPEAIHLLPDLKVL  367 (1255)
T ss_pred             c-cCchhhhhhHHH---------------------------------------HHhccccccee-echhhhhhcCCccee
Confidence            7 789999988888                                       66788888887 688999999999999


Q ss_pred             EccCCcccccCCCCccCCCCCCEEeCCCC-----cCCCCCcccc
Q 036375          856 NLSRNHIGGQIPENISGLHQLASLDLSSN-----NLSGGIPSSL  894 (1009)
Q Consensus       856 ~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N-----~l~~~ip~~l  894 (1009)
                      |+..|.=--.+|.--..-++|+.-++...     ++.|..|++.
T Consensus       368 DlreNpnLVMPPKP~da~~~lefYNIDFSLq~QlrlAG~~pasv  411 (1255)
T KOG0444|consen  368 DLRENPNLVMPPKPNDARKKLEFYNIDFSLQHQLRLAGQMPASV  411 (1255)
T ss_pred             eccCCcCccCCCCcchhhhcceeeecceehhhHHhhccCCcccc
Confidence            99998655455443222356665444332     4556666543

>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]

Probab=99.89  E-value=3.9e-25  Score=225.80  Aligned_cols=132  Identities=23%  Similarity=0.314  Sum_probs=104.3

Q ss_pred             CCCcEEECcCCcCcccCChhhcCCCCCCEEeCcCCcccccCCCCCCCCCCCcEEeCCC-CcCCCCCCcccCCCCCCCEEE
Q 036375          379 PSLISMRLGNNHLKGKLPEWLSQLENLVELTLSYNLLQGPIPASLGNLKNLTKLNLPG-NQLNGTLPETLGSLPELSVLD  457 (1009)
Q Consensus       379 ~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~-n~l~~~~p~~l~~l~~L~~L~  457 (1009)
                      +.-++++|..|+|+...+.+|+.+++|+.|||++|.|+.+.|.+|.++++|.+|.+.+ |+|+......|+++.+|+.|.
T Consensus        67 ~~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqrLl  146 (498)
T KOG4237|consen   67 PETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQRLL  146 (498)
T ss_pred             CcceEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHHHHh
Confidence            4677888888888877778888888888888888888888888888888888777766 888866566788888888888


Q ss_pred             ccCcccccccchhhhccCCCCcEEeCCCCcccccCCCCCCCCccccEEecccCc
Q 036375          458 VSSNSLTGIISEIHFSRLSKLKFLGLSSNSFILNVSSSWIPPFQVQSLNMRSCQ  511 (1009)
Q Consensus       458 Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~~~  511 (1009)
                      +.-|++.- +....|..+++|..|.+.+|.+..+....+.+...++.+.+..+.
T Consensus       147 lNan~i~C-ir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np  199 (498)
T KOG4237|consen  147 LNANHINC-IRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNP  199 (498)
T ss_pred             cChhhhcc-hhHHHHHHhhhcchhcccchhhhhhccccccchhccchHhhhcCc
Confidence            88888774 444568888888888888888887777777777777777666554

>PLN03210 Resistant to P

Probab=99.88  E-value=4e-21  Score=244.10  Aligned_cols=308  Identities=20%  Similarity=0.279  Sum_probs=150.9

Q ss_pred             CCcEEECcCCcCcccCChhhcCCCCCCEEeCcCCcccccCCCCCCCCCCCcEEeCCCCcCCCCCCcccCCCCCCCEEEcc
Q 036375          380 SLISMRLGNNHLKGKLPEWLSQLENLVELTLSYNLLQGPIPASLGNLKNLTKLNLPGNQLNGTLPETLGSLPELSVLDVS  459 (1009)
Q Consensus       380 ~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls  459 (1009)
                      +|+.|.+.++.+. .+|..+ ...+|++|++.+|.+. .++..+..+++|+.|+|++|.....+|. +..+++|+.|+++
T Consensus       590 ~Lr~L~~~~~~l~-~lP~~f-~~~~L~~L~L~~s~l~-~L~~~~~~l~~Lk~L~Ls~~~~l~~ip~-ls~l~~Le~L~L~  665 (1153)
T PLN03210        590 KLRLLRWDKYPLR-CMPSNF-RPENLVKLQMQGSKLE-KLWDGVHSLTGLRNIDLRGSKNLKEIPD-LSMATNLETLKLS  665 (1153)
T ss_pred             ccEEEEecCCCCC-CCCCcC-CccCCcEEECcCcccc-ccccccccCCCCCEEECCCCCCcCcCCc-cccCCcccEEEec
Confidence            4566666655554 444444 3456666666666555 3445555666666666665544444443 5556666666666


Q ss_pred             CcccccccchhhhccCCCCcEEeCCCCcccccCCCCCCCCccccEEecccCcCCCCCCcccccCCCccEEEccCCcccCC
Q 036375          460 SNSLTGIISEIHFSRLSKLKFLGLSSNSFILNVSSSWIPPFQVQSLNMRSCQLGPSFPSWLKTQQGVSFLDFSNASISGP  539 (1009)
Q Consensus       460 ~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~ls~n~i~~~  539 (1009)
                      +|.....+|. .+..+++|+.|++++|.....                        +|..+ ++++|+.|++++|...+.
T Consensus       666 ~c~~L~~lp~-si~~L~~L~~L~L~~c~~L~~------------------------Lp~~i-~l~sL~~L~Lsgc~~L~~  719 (1153)
T PLN03210        666 DCSSLVELPS-SIQYLNKLEDLDMSRCENLEI------------------------LPTGI-NLKSLYRLNLSGCSRLKS  719 (1153)
T ss_pred             CCCCccccch-hhhccCCCCEEeCCCCCCcCc------------------------cCCcC-CCCCCCEEeCCCCCCccc
Confidence            6554444443 255566666666655432111                        11111 233344444444433323


Q ss_pred             CCchhhhccCcccEEEeccccccccCCCCCCCCCcCeEeccCCCCCCCCCCCCCCccEEEccCCcCC---C---cCCchh
Q 036375          540 IPNWFWDISSKLSLLNVSLNQLQGQLPNPLNIAPFADVDFRSNLLEGPIPLPIVEIELLDLSNNHFS---G---PIPQNI  613 (1009)
Q Consensus       540 ~p~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~~l~~l~l~~n~l~~~~~~~~~~L~~L~Ls~n~l~---~---~ip~~~  613 (1009)
                      +|..    ..+|+.|++++|.+. .+|..+.                     +.+|+.|++.++...   +   .++...
T Consensus       720 ~p~~----~~nL~~L~L~~n~i~-~lP~~~~---------------------l~~L~~L~l~~~~~~~l~~~~~~l~~~~  773 (1153)
T PLN03210        720 FPDI----STNISWLDLDETAIE-EFPSNLR---------------------LENLDELILCEMKSEKLWERVQPLTPLM  773 (1153)
T ss_pred             cccc----cCCcCeeecCCCccc-ccccccc---------------------ccccccccccccchhhccccccccchhh
Confidence            3321    234455555555443 2222111                     234555555443211   0   111112


Q ss_pred             hcCCCCccEEEccCCcccccCCcccccCCCCCeEEccCCcCCccCcCcccCCCCCCEEECCCCcCcccCCccccCCCCCC
Q 036375          614 SGSMPNLIFLSVSGNRLTGKIPGSIGEMQLLQVIDLSRNSISGSISSSIGNCTFLKVLDLSYSSLSGVIPASLGQLTRLQ  693 (1009)
Q Consensus       614 ~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~  693 (1009)
                      ...+++|+.|++++|...+.+|.+++++++|+.|++++|...+.+|..+ ++++|+.|++++|.....+|..   .++|+
T Consensus       774 ~~~~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~-~L~sL~~L~Ls~c~~L~~~p~~---~~nL~  849 (1153)
T PLN03210        774 TMLSPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTGI-NLESLESLDLSGCSRLRTFPDI---STNIS  849 (1153)
T ss_pred             hhccccchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCCCC-CccccCEEECCCCCcccccccc---ccccC
Confidence            2234556666666665555566666666666666666654444445443 4556666666665444344332   24555


Q ss_pred             EEEccCccccCCCchhhcCCCCCCEEECcCCcccccCchhhhhcCcCCcEEEccCC
Q 036375          694 SLHLNNNKLTGNLPSSFQNLTSLETLDLGNNRFSGNIPSLLGNGFVGLRILSLRSN  749 (1009)
Q Consensus       694 ~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~ip~~l~~~l~~L~~L~L~~N  749 (1009)
                      .|+|++|.++ .+|.++..+++|+.|++++|+-...+|.... .+++|+.+++++|
T Consensus       850 ~L~Ls~n~i~-~iP~si~~l~~L~~L~L~~C~~L~~l~~~~~-~L~~L~~L~l~~C  903 (1153)
T PLN03210        850 DLNLSRTGIE-EVPWWIEKFSNLSFLDMNGCNNLQRVSLNIS-KLKHLETVDFSDC  903 (1153)
T ss_pred             EeECCCCCCc-cChHHHhcCCCCCEEECCCCCCcCccCcccc-cccCCCeeecCCC
Confidence            6666666555 3555555556666666655333334554443 2555555555555

syringae 6; Provisional

>PLN03210 Resistant to P

Probab=99.87  E-value=8.2e-21  Score=241.31  Aligned_cols=339  Identities=24%  Similarity=0.302  Sum_probs=234.0

Q ss_pred             CcccccCCCccEEEccCCc------ccCCCCchhhhccCcccEEEeccccccccCCCCCCCCCcCeEeccCCCCCCCC--
Q 036375          517 PSWLKTQQGVSFLDFSNAS------ISGPIPNWFWDISSKLSLLNVSLNQLQGQLPNPLNIAPFADVDFRSNLLEGPI--  588 (1009)
Q Consensus       517 ~~~l~~~~~L~~L~ls~n~------i~~~~p~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~~l~~l~l~~n~l~~~~--  588 (1009)
                      +..|..+++|+.|.+..+.      +...+|..+.....+|+.|.+.++.+. .+|..+....+..+++.++.+...-  
T Consensus       551 ~~aF~~m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~~l~-~lP~~f~~~~L~~L~L~~s~l~~L~~~  629 (1153)
T PLN03210        551 ENAFKGMRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKYPLR-CMPSNFRPENLVKLQMQGSKLEKLWDG  629 (1153)
T ss_pred             HHHHhcCccccEEEEecccccccccceeecCcchhhcCcccEEEEecCCCCC-CCCCcCCccCCcEEECcCccccccccc
Confidence            3456677777777775543      233456655555567888888777664 5566666677777777777664321  


Q ss_pred             CCCCCCccEEEccCCcCCCcCCchhhcCCCCccEEEccCCcccccCCcccccCCCCCeEEccCCcCCccCcCcccCCCCC
Q 036375          589 PLPIVEIELLDLSNNHFSGPIPQNISGSMPNLIFLSVSGNRLTGKIPGSIGEMQLLQVIDLSRNSISGSISSSIGNCTFL  668 (1009)
Q Consensus       589 ~~~~~~L~~L~Ls~n~l~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L  668 (1009)
                      ...+++|+.|+++++...+.+|.  +..+++|++|++++|.....+|..+..+++|+.|++++|...+.+|..+ ++++|
T Consensus       630 ~~~l~~Lk~L~Ls~~~~l~~ip~--ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i-~l~sL  706 (1153)
T PLN03210        630 VHSLTGLRNIDLRGSKNLKEIPD--LSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTGI-NLKSL  706 (1153)
T ss_pred             cccCCCCCEEECCCCCCcCcCCc--cccCCcccEEEecCCCCccccchhhhccCCCCEEeCCCCCCcCccCCcC-CCCCC
Confidence            12457888889988776667774  4568889999998888777888888888899999998876555677655 78889


Q ss_pred             CEEECCCCcCcccCCccccCCCCCCEEEccCccccCCCchhhcCCCCCCEEECcCCccc------ccCchhhhhcCcCCc
Q 036375          669 KVLDLSYSSLSGVIPASLGQLTRLQSLHLNNNKLTGNLPSSFQNLTSLETLDLGNNRFS------GNIPSLLGNGFVGLR  742 (1009)
Q Consensus       669 ~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~------~~ip~~l~~~l~~L~  742 (1009)
                      +.|++++|...+.+|..   .++|+.|++++|.+. .+|..+ .+++|+.|++.++...      ..++......+++|+
T Consensus       707 ~~L~Lsgc~~L~~~p~~---~~nL~~L~L~~n~i~-~lP~~~-~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~sL~  781 (1153)
T PLN03210        707 YRLNLSGCSRLKSFPDI---STNISWLDLDETAIE-EFPSNL-RLENLDELILCEMKSEKLWERVQPLTPLMTMLSPSLT  781 (1153)
T ss_pred             CEEeCCCCCCccccccc---cCCcCeeecCCCccc-cccccc-cccccccccccccchhhccccccccchhhhhccccch
Confidence            99999888766666643   367888889888876 566554 5678888888764321      011222222357888


Q ss_pred             EEEccCCcccccCCcccCCCCCCCEEEccCCcCCCCCChhhhhhhhhhhccchhhhhhccccccceeeceEEEeecCCCC
Q 036375          743 ILSLRSNAFSGEIPSKLSNLSSLQVLDLAENNLTGSIPGSVGDLKAMAHVQNIVKYLLFGRYRGIYYEENLVINTKGSSK  822 (1009)
Q Consensus       743 ~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  822 (1009)
                      .|++++|...+.+|..++++++|+.|++++|+..+.+|..+ ++++|                                 
T Consensus       782 ~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~-~L~sL---------------------------------  827 (1153)
T PLN03210        782 RLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTGI-NLESL---------------------------------  827 (1153)
T ss_pred             heeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCCCC-Ccccc---------------------------------
Confidence            88998888777888888888899999998887666677654 34444                                 


Q ss_pred             CCCCceeEEEccCCccCCCCCccccCcCCCCeEEccCCcccccCCCCccCCCCCCEEeCCCC-cCCCCCcccccCCCCCC
Q 036375          823 DTPRLFHFIDLSGNNLHGDFPTQLTKLVGLVVLNLSRNHIGGQIPENISGLHQLASLDLSSN-NLSGGIPSSLSSLSFLG  901 (1009)
Q Consensus       823 ~~~~~l~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N-~l~~~ip~~l~~l~~L~  901 (1009)
                            +.|+|++|..-..+|..   .++|+.|+|++|.++ .+|.++..+++|+.|++++| ++. .+|..+..++.|+
T Consensus       828 ------~~L~Ls~c~~L~~~p~~---~~nL~~L~Ls~n~i~-~iP~si~~l~~L~~L~L~~C~~L~-~l~~~~~~L~~L~  896 (1153)
T PLN03210        828 ------ESLDLSGCSRLRTFPDI---STNISDLNLSRTGIE-EVPWWIEKFSNLSFLDMNGCNNLQ-RVSLNISKLKHLE  896 (1153)
T ss_pred             ------CEEECCCCCcccccccc---ccccCEeECCCCCCc-cChHHHhcCCCCCEEECCCCCCcC-ccCcccccccCCC
Confidence                  66777776554445543   245677777777776 45667777777777777773 444 4666666777777


Q ss_pred             eEeCCCCc
Q 036375          902 YINLSRNQ  909 (1009)
Q Consensus       902 ~L~ls~N~  909 (1009)
                      .++++++.
T Consensus       897 ~L~l~~C~  904 (1153)
T PLN03210        897 TVDFSDCG  904 (1153)
T ss_pred             eeecCCCc
Confidence            77777664

syringae 6; Provisional

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=99.86  E-value=3.8e-21  Score=225.30  Aligned_cols=242  Identities=29%  Similarity=0.342  Sum_probs=159.5

Q ss_pred             CCccEEEccCCcCCCcCCchhhcCCCCccEEEccCCcccccCCcccccCCCCCeEEccCCcCCccCcCcccCCCCCCEEE
Q 036375          593 VEIELLDLSNNHFSGPIPQNISGSMPNLIFLSVSGNRLTGKIPGSIGEMQLLQVIDLSRNSISGSISSSIGNCTFLKVLD  672 (1009)
Q Consensus       593 ~~L~~L~Ls~n~l~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~  672 (1009)
                      .+++.|++++|+++ .+|.    .+++|++|++++|+++.. |..   .++|+.|++++|.++. +|..   .++|+.|+
T Consensus       222 ~~L~~L~L~~N~Lt-~LP~----lp~~Lk~LdLs~N~LtsL-P~l---p~sL~~L~Ls~N~L~~-Lp~l---p~~L~~L~  288 (788)
T PRK15387        222 AHITTLVIPDNNLT-SLPA----LPPELRTLEVSGNQLTSL-PVL---PPGLLELSIFSNPLTH-LPAL---PSGLCKLW  288 (788)
T ss_pred             cCCCEEEccCCcCC-CCCC----CCCCCcEEEecCCccCcc-cCc---ccccceeeccCCchhh-hhhc---hhhcCEEE
Confidence            35666777777666 4553    246777777777777743 322   3567777777777763 3332   24567777


Q ss_pred             CCCCcCcccCCccccCCCCCCEEEccCccccCCCchhhcCCCCCCEEECcCCcccccCchhhhhcCcCCcEEEccCCccc
Q 036375          673 LSYSSLSGVIPASLGQLTRLQSLHLNNNKLTGNLPSSFQNLTSLETLDLGNNRFSGNIPSLLGNGFVGLRILSLRSNAFS  752 (1009)
Q Consensus       673 Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~ip~~l~~~l~~L~~L~L~~N~l~  752 (1009)
                      +++|+++. +|..   .++|+.|++++|++++ +|..   ..+|+.|++++|.++ .+|..    ..+|+.|++++|+++
T Consensus       289 Ls~N~Lt~-LP~~---p~~L~~LdLS~N~L~~-Lp~l---p~~L~~L~Ls~N~L~-~LP~l----p~~Lq~LdLS~N~Ls  355 (788)
T PRK15387        289 IFGNQLTS-LPVL---PPGLQELSVSDNQLAS-LPAL---PSELCKLWAYNNQLT-SLPTL----PSGLQELSVSDNQLA  355 (788)
T ss_pred             CcCCcccc-cccc---ccccceeECCCCcccc-CCCC---cccccccccccCccc-ccccc----ccccceEecCCCccC
Confidence            77777773 3432   3567777777777774 3432   235667777777776 46642    356777777777777


Q ss_pred             ccCCcccCCCCCCCEEEccCCcCCCCCChhhhhhhhhhhccchhhhhhccccccceeeceEEEeecCCCCCCCCceeEEE
Q 036375          753 GEIPSKLSNLSSLQVLDLAENNLTGSIPGSVGDLKAMAHVQNIVKYLLFGRYRGIYYEENLVINTKGSSKDTPRLFHFID  832 (1009)
Q Consensus       753 ~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~  832 (1009)
                       .+|..   .++|+.|++++|++++ +|...   .                                       .++.|+
T Consensus       356 -~LP~l---p~~L~~L~Ls~N~L~~-LP~l~---~---------------------------------------~L~~Ld  388 (788)
T PRK15387        356 -SLPTL---PSELYKLWAYNNRLTS-LPALP---S---------------------------------------GLKELI  388 (788)
T ss_pred             -CCCCC---Ccccceehhhcccccc-Ccccc---c---------------------------------------ccceEE
Confidence             34542   2456677777777763 44321   1                                       226788


Q ss_pred             ccCCccCCCCCccccCcCCCCeEEccCCcccccCCCCccCCCCCCEEeCCCCcCCCCCcccccCCCCCCeEeCCCCccee
Q 036375          833 LSGNNLHGDFPTQLTKLVGLVVLNLSRNHIGGQIPENISGLHQLASLDLSSNNLSGGIPSSLSSLSFLGYINLSRNQLSG  912 (1009)
Q Consensus       833 Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~ls~N~l~g  912 (1009)
                      |++|+|++ +|...   +.|+.|++++|+|++ +|...   .+|+.|++++|+|+ .+|..+.+++.|++|++++|+|+|
T Consensus       389 Ls~N~Lt~-LP~l~---s~L~~LdLS~N~Lss-IP~l~---~~L~~L~Ls~NqLt-~LP~sl~~L~~L~~LdLs~N~Ls~  459 (788)
T PRK15387        389 VSGNRLTS-LPVLP---SELKELMVSGNRLTS-LPMLP---SGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSE  459 (788)
T ss_pred             ecCCcccC-CCCcc---cCCCEEEccCCcCCC-CCcch---hhhhhhhhccCccc-ccChHHhhccCCCeEECCCCCCCc
Confidence            88888884 55432   568888888888885 55433   46778888888888 678888888888888888888888


Q ss_pred             cCCC
Q 036375          913 KIPF  916 (1009)
Q Consensus       913 ~ip~  916 (1009)
                      .+|.
T Consensus       460 ~~~~  463 (788)
T PRK15387        460 RTLQ  463 (788)
T ss_pred             hHHH
Confidence            7765

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=99.86  E-value=4.7e-21  Score=224.57  Aligned_cols=267  Identities=26%  Similarity=0.380  Sum_probs=201.2

Q ss_pred             ccEEEccCCcccCCCCchhhhccCcccEEEeccccccccCCCCCCCCCcCeEeccCCCCCCCCCCCCCCccEEEccCCcC
Q 036375          526 VSFLDFSNASISGPIPNWFWDISSKLSLLNVSLNQLQGQLPNPLNIAPFADVDFRSNLLEGPIPLPIVEIELLDLSNNHF  605 (1009)
Q Consensus       526 L~~L~ls~n~i~~~~p~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~~l~~l~l~~n~l~~~~~~~~~~L~~L~Ls~n~l  605 (1009)
                      -..|+++++.++ .+|..+.   ++++.|++.+|+++.                        +|..+++|++|++++|++
T Consensus       203 ~~~LdLs~~~Lt-sLP~~l~---~~L~~L~L~~N~Lt~------------------------LP~lp~~Lk~LdLs~N~L  254 (788)
T PRK15387        203 NAVLNVGESGLT-TLPDCLP---AHITTLVIPDNNLTS------------------------LPALPPELRTLEVSGNQL  254 (788)
T ss_pred             CcEEEcCCCCCC-cCCcchh---cCCCEEEccCCcCCC------------------------CCCCCCCCcEEEecCCcc
Confidence            456777777776 4565543   356677777776653                        233346889999999988


Q ss_pred             CCcCCchhhcCCCCccEEEccCCcccccCCcccccCCCCCeEEccCCcCCccCcCcccCCCCCCEEECCCCcCcccCCcc
Q 036375          606 SGPIPQNISGSMPNLIFLSVSGNRLTGKIPGSIGEMQLLQVIDLSRNSISGSISSSIGNCTFLKVLDLSYSSLSGVIPAS  685 (1009)
Q Consensus       606 ~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~  685 (1009)
                      + .+|.    ..++|+.|++++|.++.. |..   .++|+.|++++|+++. +|.   ..++|+.|++++|++++ +|..
T Consensus       255 t-sLP~----lp~sL~~L~Ls~N~L~~L-p~l---p~~L~~L~Ls~N~Lt~-LP~---~p~~L~~LdLS~N~L~~-Lp~l  320 (788)
T PRK15387        255 T-SLPV----LPPGLLELSIFSNPLTHL-PAL---PSGLCKLWIFGNQLTS-LPV---LPPGLQELSVSDNQLAS-LPAL  320 (788)
T ss_pred             C-cccC----cccccceeeccCCchhhh-hhc---hhhcCEEECcCCcccc-ccc---cccccceeECCCCcccc-CCCC
Confidence            8 5664    357899999999988743 332   3568899999999884 444   24689999999999986 4542


Q ss_pred             ccCCCCCCEEEccCccccCCCchhhcCCCCCCEEECcCCcccccCchhhhhcCcCCcEEEccCCcccccCCcccCCCCCC
Q 036375          686 LGQLTRLQSLHLNNNKLTGNLPSSFQNLTSLETLDLGNNRFSGNIPSLLGNGFVGLRILSLRSNAFSGEIPSKLSNLSSL  765 (1009)
Q Consensus       686 ~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~ip~~l~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L  765 (1009)
                         ..+|+.|++++|++++ +|..   ..+|+.|+|++|+++ .+|..    ..+|+.|++++|+++ .+|..   .++|
T Consensus       321 ---p~~L~~L~Ls~N~L~~-LP~l---p~~Lq~LdLS~N~Ls-~LP~l----p~~L~~L~Ls~N~L~-~LP~l---~~~L  384 (788)
T PRK15387        321 ---PSELCKLWAYNNQLTS-LPTL---PSGLQELSVSDNQLA-SLPTL----PSELYKLWAYNNRLT-SLPAL---PSGL  384 (788)
T ss_pred             ---cccccccccccCcccc-cccc---ccccceEecCCCccC-CCCCC----Ccccceehhhccccc-cCccc---cccc
Confidence               2468889999999984 5532   257999999999998 67763    567889999999998 46754   3578


Q ss_pred             CEEEccCCcCCCCCChhhhhhhhhhhccchhhhhhccccccceeeceEEEeecCCCCCCCCceeEEEccCCccCCCCCcc
Q 036375          766 QVLDLAENNLTGSIPGSVGDLKAMAHVQNIVKYLLFGRYRGIYYEENLVINTKGSSKDTPRLFHFIDLSGNNLHGDFPTQ  845 (1009)
Q Consensus       766 ~~L~Ls~N~l~~~~p~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~Ls~N~l~~~~p~~  845 (1009)
                      +.|++++|++++ +|...   +.                                       ++.|++++|+|++ +|..
T Consensus       385 ~~LdLs~N~Lt~-LP~l~---s~---------------------------------------L~~LdLS~N~Lss-IP~l  420 (788)
T PRK15387        385 KELIVSGNRLTS-LPVLP---SE---------------------------------------LKELMVSGNRLTS-LPML  420 (788)
T ss_pred             ceEEecCCcccC-CCCcc---cC---------------------------------------CCEEEccCCcCCC-CCcc
Confidence            999999999984 55322   12                                       3789999999985 6754


Q ss_pred             ccCcCCCCeEEccCCcccccCCCCccCCCCCCEEeCCCCcCCCCCcccccCCC
Q 036375          846 LTKLVGLVVLNLSRNHIGGQIPENISGLHQLASLDLSSNNLSGGIPSSLSSLS  898 (1009)
Q Consensus       846 l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~  898 (1009)
                      .   .+|+.|++++|+|+ .+|+.+.++++|+.|+|++|+++|.+|..+..+.
T Consensus       421 ~---~~L~~L~Ls~NqLt-~LP~sl~~L~~L~~LdLs~N~Ls~~~~~~L~~l~  469 (788)
T PRK15387        421 P---SGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQALREIT  469 (788)
T ss_pred             h---hhhhhhhhccCccc-ccChHHhhccCCCeEECCCCCCCchHHHHHHHHh
Confidence            3   46788999999998 6799999999999999999999999998875543

>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]

Probab=99.82  E-value=6.2e-22  Score=202.58  Aligned_cols=295  Identities=24%  Similarity=0.266  Sum_probs=173.6

Q ss_pred             EEccCCcCCCcCCchhhcCCCCccEEEccCCcccccCCcccccCCCCCeEEccCCcCCccCcCcccCCCCCCEEECCC-C
Q 036375          598 LDLSNNHFSGPIPQNISGSMPNLIFLSVSGNRLTGKIPGSIGEMQLLQVIDLSRNSISGSISSSIGNCTFLKVLDLSY-S  676 (1009)
Q Consensus       598 L~Ls~n~l~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~-N  676 (1009)
                      .+.++-.++ .+|.++   .+.-+.++|..|+|+.+.+++|+.+++|+.|||++|+|+.+-|++|.++++|..|-+.+ |
T Consensus        51 VdCr~~GL~-eVP~~L---P~~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~N  126 (498)
T KOG4237|consen   51 VDCRGKGLT-EVPANL---PPETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNN  126 (498)
T ss_pred             EEccCCCcc-cCcccC---CCcceEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCC
Confidence            444444444 566543   34667788888888888888888888888888888888888888888888777766555 8


Q ss_pred             cCcccCCccccCCCCCCEEEccCccccCCCchhhcCCCCCCEEECcCCcccccCchhhhhcCcCCcEEEccCCcccc---
Q 036375          677 SLSGVIPASLGQLTRLQSLHLNNNKLTGNLPSSFQNLTSLETLDLGNNRFSGNIPSLLGNGFVGLRILSLRSNAFSG---  753 (1009)
Q Consensus       677 ~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~ip~~l~~~l~~L~~L~L~~N~l~~---  753 (1009)
                      +|+......|+++.+|+.|.+.-|++.-.....|..+++|..|.+.+|.+. .++...+..+.+++.+.+..|.+..   
T Consensus       127 kI~~l~k~~F~gL~slqrLllNan~i~Cir~~al~dL~~l~lLslyDn~~q-~i~~~tf~~l~~i~tlhlA~np~icdCn  205 (498)
T KOG4237|consen  127 KITDLPKGAFGGLSSLQRLLLNANHINCIRQDALRDLPSLSLLSLYDNKIQ-SICKGTFQGLAAIKTLHLAQNPFICDCN  205 (498)
T ss_pred             chhhhhhhHhhhHHHHHHHhcChhhhcchhHHHHHHhhhcchhcccchhhh-hhccccccchhccchHhhhcCccccccc
Confidence            888666677888888888888888888777777888888888888888886 6776555567777777777776431   


Q ss_pred             ---------cCCcccCCCCCCCEEEccCCcCCCCCChhhhhhhhhhhccchhhhhhccccccceeeceEEEeecCCCCCC
Q 036375          754 ---------EIPSKLSNLSSLQVLDLAENNLTGSIPGSVGDLKAMAHVQNIVKYLLFGRYRGIYYEENLVINTKGSSKDT  824 (1009)
Q Consensus       754 ---------~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  824 (1009)
                               ..|..++.........+.++++...-+..|..-                       .+.+.          
T Consensus       206 L~wla~~~a~~~ietsgarc~~p~rl~~~Ri~q~~a~kf~c~-----------------------~esl~----------  252 (498)
T KOG4237|consen  206 LPWLADDLAMNPIETSGARCVSPYRLYYKRINQEDARKFLCS-----------------------LESLP----------  252 (498)
T ss_pred             cchhhhHHhhchhhcccceecchHHHHHHHhcccchhhhhhh-----------------------HHhHH----------
Confidence                     111111111111111222222221111111100                       00000          


Q ss_pred             CCceeEEEccCC-ccCCCCC-ccccCcCCCCeEEccCCcccccCCCCccCCCCCCEEeCCCCcCCCCCcccccCCCCCCe
Q 036375          825 PRLFHFIDLSGN-NLHGDFP-TQLTKLVGLVVLNLSRNHIGGQIPENISGLHQLASLDLSSNNLSGGIPSSLSSLSFLGY  902 (1009)
Q Consensus       825 ~~~l~~L~Ls~N-~l~~~~p-~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~  902 (1009)
                          .  .++.+ ...++-| ..|..|++|+.|+|++|+++++-+.+|.++..++.|.|..|+|...--..|.++..|++
T Consensus       253 ----s--~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~~i~~~aFe~~a~l~eL~L~~N~l~~v~~~~f~~ls~L~t  326 (498)
T KOG4237|consen  253 ----S--RLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKITRIEDGAFEGAAELQELYLTRNKLEFVSSGMFQGLSGLKT  326 (498)
T ss_pred             ----H--hhccccCcCCcChHHHHhhcccceEeccCCCccchhhhhhhcchhhhhhhhcCcchHHHHHHHhhhcccccee
Confidence                0  01111 1222223 23566666666666666666666666666666666666666666555555666666666


Q ss_pred             EeCCCCcceecCCCCC-CCCcccCCcCCCCCCCCC
Q 036375          903 INLSRNQLSGKIPFEG-HMTTFDASSFAGNPGLCG  936 (1009)
Q Consensus       903 L~ls~N~l~g~ip~~~-~~~~~~~~~~~~n~~lc~  936 (1009)
                      |+|.+|+++..-|..- ...++....+.+||+.|.
T Consensus       327 L~L~~N~it~~~~~aF~~~~~l~~l~l~~Np~~Cn  361 (498)
T KOG4237|consen  327 LSLYDNQITTVAPGAFQTLFSLSTLNLLSNPFNCN  361 (498)
T ss_pred             eeecCCeeEEEecccccccceeeeeehccCcccCc
Confidence            6666666665555321 112233344556666664

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=99.78  E-value=4.3e-19  Score=209.90  Aligned_cols=245  Identities=27%  Similarity=0.443  Sum_probs=118.6

Q ss_pred             ccEEEccCCcCCCcCCchhhcCCCCccEEEccCCcccccCCcccccCCCCCeEEccCCcCCccCcCcccCCCCCCEEECC
Q 036375          595 IELLDLSNNHFSGPIPQNISGSMPNLIFLSVSGNRLTGKIPGSIGEMQLLQVIDLSRNSISGSISSSIGNCTFLKVLDLS  674 (1009)
Q Consensus       595 L~~L~Ls~n~l~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls  674 (1009)
                      ...|+++++.++ .+|..+   .+.++.|++++|+++. +|..+.  ++|++|++++|+++ .+|..+.  .+|+.|+++
T Consensus       180 ~~~L~L~~~~Lt-sLP~~I---p~~L~~L~Ls~N~Lts-LP~~l~--~nL~~L~Ls~N~Lt-sLP~~l~--~~L~~L~Ls  249 (754)
T PRK15370        180 KTELRLKILGLT-TIPACI---PEQITTLILDNNELKS-LPENLQ--GNIKTLYANSNQLT-SIPATLP--DTIQEMELS  249 (754)
T ss_pred             ceEEEeCCCCcC-cCCccc---ccCCcEEEecCCCCCc-CChhhc--cCCCEEECCCCccc-cCChhhh--ccccEEECc
Confidence            344555555554 344322   2345555555555553 222221  34555555555555 2333332  245555555


Q ss_pred             CCcCcccCCccccCCCCCCEEEccCccccCCCchhhcCCCCCCEEECcCCcccccCchhhhhcCcCCcEEEccCCccccc
Q 036375          675 YSSLSGVIPASLGQLTRLQSLHLNNNKLTGNLPSSFQNLTSLETLDLGNNRFSGNIPSLLGNGFVGLRILSLRSNAFSGE  754 (1009)
Q Consensus       675 ~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~ip~~l~~~l~~L~~L~L~~N~l~~~  754 (1009)
                      +|++. .+|..+.  .+|+.|++++|+++ .+|..+.  ++|+.|++++|+++ .+|..+   .++|+.|++++|.++ .
T Consensus       250 ~N~L~-~LP~~l~--s~L~~L~Ls~N~L~-~LP~~l~--~sL~~L~Ls~N~Lt-~LP~~l---p~sL~~L~Ls~N~Lt-~  318 (754)
T PRK15370        250 INRIT-ELPERLP--SALQSLDLFHNKIS-CLPENLP--EELRYLSVYDNSIR-TLPAHL---PSGITHLNVQSNSLT-A  318 (754)
T ss_pred             CCccC-cCChhHh--CCCCEEECcCCccC-ccccccC--CCCcEEECCCCccc-cCcccc---hhhHHHHHhcCCccc-c
Confidence            55555 3444332  34555555555555 3444332  35555556555555 344432   234555555555555 2


Q ss_pred             CCcccCCCCCCCEEEccCCcCCCCCChhhhhhhhhhhccchhhhhhccccccceeeceEEEeecCCCCCCCCceeEEEcc
Q 036375          755 IPSKLSNLSSLQVLDLAENNLTGSIPGSVGDLKAMAHVQNIVKYLLFGRYRGIYYEENLVINTKGSSKDTPRLFHFIDLS  834 (1009)
Q Consensus       755 ~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~Ls  834 (1009)
                      +|..+.  ++|+.|++++|.+++ +|..+.  ++                                       ++.|+|+
T Consensus       319 LP~~l~--~sL~~L~Ls~N~Lt~-LP~~l~--~s---------------------------------------L~~L~Ls  354 (754)
T PRK15370        319 LPETLP--PGLKTLEAGENALTS-LPASLP--PE---------------------------------------LQVLDVS  354 (754)
T ss_pred             CCcccc--ccceeccccCCcccc-CChhhc--Cc---------------------------------------ccEEECC
Confidence            333222  455556666665553 343221  11                                       2555666


Q ss_pred             CCccCCCCCccccCcCCCCeEEccCCcccccCCCCccCCCCCCEEeCCCCcCCCCCcccc----cCCCCCCeEeCCCCcc
Q 036375          835 GNNLHGDFPTQLTKLVGLVVLNLSRNHIGGQIPENISGLHQLASLDLSSNNLSGGIPSSL----SSLSFLGYINLSRNQL  910 (1009)
Q Consensus       835 ~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~l----~~l~~L~~L~ls~N~l  910 (1009)
                      +|+|+ .+|..+.  +.|+.|+|++|+|+. +|+.+.  .+|+.|++++|+++ .+|..+    ..++.+..+++.+|++
T Consensus       355 ~N~L~-~LP~~lp--~~L~~LdLs~N~Lt~-LP~~l~--~sL~~LdLs~N~L~-~LP~sl~~~~~~~~~l~~L~L~~Npl  427 (754)
T PRK15370        355 KNQIT-VLPETLP--PTITTLDVSRNALTN-LPENLP--AALQIMQASRNNLV-RLPESLPHFRGEGPQPTRIIVEYNPF  427 (754)
T ss_pred             CCCCC-cCChhhc--CCcCEEECCCCcCCC-CCHhHH--HHHHHHhhccCCcc-cCchhHHHHhhcCCCccEEEeeCCCc
Confidence            66655 3444332  356666666666653 333333  24556666666665 233332    2335556666666665


Q ss_pred             e
Q 036375          911 S  911 (1009)
Q Consensus       911 ~  911 (1009)
                      +
T Consensus       428 s  428 (754)
T PRK15370        428 S  428 (754)
T ss_pred             c
Confidence            4

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=99.78  E-value=4.2e-19  Score=210.04  Aligned_cols=246  Identities=27%  Similarity=0.472  Sum_probs=172.1

Q ss_pred             CCccEEEccCCcCCCcCCchhhcCCCCccEEEccCCcccccCCcccccCCCCCeEEccCCcCCccCcCcccCCCCCCEEE
Q 036375          593 VEIELLDLSNNHFSGPIPQNISGSMPNLIFLSVSGNRLTGKIPGSIGEMQLLQVIDLSRNSISGSISSSIGNCTFLKVLD  672 (1009)
Q Consensus       593 ~~L~~L~Ls~n~l~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~  672 (1009)
                      ..++.|++++|+++ .+|..++   ++|++|++++|+++. +|..+.  .+|+.|++++|++. .+|..+.  ++|+.|+
T Consensus       199 ~~L~~L~Ls~N~Lt-sLP~~l~---~nL~~L~Ls~N~Lts-LP~~l~--~~L~~L~Ls~N~L~-~LP~~l~--s~L~~L~  268 (754)
T PRK15370        199 EQITTLILDNNELK-SLPENLQ---GNIKTLYANSNQLTS-IPATLP--DTIQEMELSINRIT-ELPERLP--SALQSLD  268 (754)
T ss_pred             cCCcEEEecCCCCC-cCChhhc---cCCCEEECCCCcccc-CChhhh--ccccEEECcCCccC-cCChhHh--CCCCEEE
Confidence            46778888888887 6676543   478888888888874 454442  46888888888887 5565553  4788888


Q ss_pred             CCCCcCcccCCccccCCCCCCEEEccCccccCCCchhhcCCCCCCEEECcCCcccccCchhhhhcCcCCcEEEccCCccc
Q 036375          673 LSYSSLSGVIPASLGQLTRLQSLHLNNNKLTGNLPSSFQNLTSLETLDLGNNRFSGNIPSLLGNGFVGLRILSLRSNAFS  752 (1009)
Q Consensus       673 Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~ip~~l~~~l~~L~~L~L~~N~l~  752 (1009)
                      +++|+++ .+|..+.  ++|+.|++++|++++ +|..+.  ++|+.|++++|.++ .+|..+   .++|+.|++++|.++
T Consensus       269 Ls~N~L~-~LP~~l~--~sL~~L~Ls~N~Lt~-LP~~lp--~sL~~L~Ls~N~Lt-~LP~~l---~~sL~~L~Ls~N~Lt  338 (754)
T PRK15370        269 LFHNKIS-CLPENLP--EELRYLSVYDNSIRT-LPAHLP--SGITHLNVQSNSLT-ALPETL---PPGLKTLEAGENALT  338 (754)
T ss_pred             CcCCccC-ccccccC--CCCcEEECCCCcccc-Ccccch--hhHHHHHhcCCccc-cCCccc---cccceeccccCCccc
Confidence            8888888 4566553  578888888888884 555443  46888888888887 577654   467888888888887


Q ss_pred             ccCCcccCCCCCCCEEEccCCcCCCCCChhhhhhhhhhhccchhhhhhccccccceeeceEEEeecCCCCCCCCceeEEE
Q 036375          753 GEIPSKLSNLSSLQVLDLAENNLTGSIPGSVGDLKAMAHVQNIVKYLLFGRYRGIYYEENLVINTKGSSKDTPRLFHFID  832 (1009)
Q Consensus       753 ~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~  832 (1009)
                      + +|..+.  ++|+.|++++|+++ .+|..+.  +.                                       ++.|+
T Consensus       339 ~-LP~~l~--~sL~~L~Ls~N~L~-~LP~~lp--~~---------------------------------------L~~Ld  373 (754)
T PRK15370        339 S-LPASLP--PELQVLDVSKNQIT-VLPETLP--PT---------------------------------------ITTLD  373 (754)
T ss_pred             c-CChhhc--CcccEEECCCCCCC-cCChhhc--CC---------------------------------------cCEEE
Confidence            4 666553  68888999988887 4564432  22                                       27888


Q ss_pred             ccCCccCCCCCccccCcCCCCeEEccCCcccccCCCCc----cCCCCCCEEeCCCCcCCCCCcccccCCCCCCeEeCCCC
Q 036375          833 LSGNNLHGDFPTQLTKLVGLVVLNLSRNHIGGQIPENI----SGLHQLASLDLSSNNLSGGIPSSLSSLSFLGYINLSRN  908 (1009)
Q Consensus       833 Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l----~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~ls~N  908 (1009)
                      |++|+++ .+|..+.  ..|+.|++++|+++ .+|+.+    +.++.+..|++.+|.++.   ..+   ..|+.+ ++.+
T Consensus       374 Ls~N~Lt-~LP~~l~--~sL~~LdLs~N~L~-~LP~sl~~~~~~~~~l~~L~L~~Npls~---~tl---~~L~~L-l~s~  442 (754)
T PRK15370        374 VSRNALT-NLPENLP--AALQIMQASRNNLV-RLPESLPHFRGEGPQPTRIIVEYNPFSE---RTI---QNMQRL-MSSV  442 (754)
T ss_pred             CCCCcCC-CCCHhHH--HHHHHHhhccCCcc-cCchhHHHHhhcCCCccEEEeeCCCccH---HHH---HHHHHh-hhcc
Confidence            9998888 4566554  36888889999888 445443    345778899999998873   233   333444 4556


Q ss_pred             cceecC
Q 036375          909 QLSGKI  914 (1009)
Q Consensus       909 ~l~g~i  914 (1009)
                      .+.|++
T Consensus       443 ~~~gp~  448 (754)
T PRK15370        443 GYQGPR  448 (754)
T ss_pred             cccCCc
Confidence            666654

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=99.74  E-value=2e-19  Score=199.15  Aligned_cols=276  Identities=27%  Similarity=0.324  Sum_probs=141.0

Q ss_pred             EEccCCcCCCcCCchhhcCCCCccEEEccCCccccc----CCcccccCCCCCeEEccCCcCCc------cCcCcccCCCC
Q 036375          598 LDLSNNHFSGPIPQNISGSMPNLIFLSVSGNRLTGK----IPGSIGEMQLLQVIDLSRNSISG------SISSSIGNCTF  667 (1009)
Q Consensus       598 L~Ls~n~l~~~ip~~~~~~l~~L~~L~Ls~n~l~~~----~~~~~~~l~~L~~L~Ls~N~l~~------~~p~~l~~l~~  667 (1009)
                      |+|.++.+++.--...+..++.|+++++++|.++..    ++..+...+++++++++++.+.+      .++..+..+++
T Consensus         3 l~L~~~~l~~~~~~~~~~~l~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~   82 (319)
T cd00116           3 LSLKGELLKTERATELLPKLLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCG   82 (319)
T ss_pred             cccccCcccccchHHHHHHHhhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcCc
Confidence            455555555332234444556677777777766432    33344455667777777666552      22334555666


Q ss_pred             CCEEECCCCcCcccCCccccCCCC---CCEEEccCccccC----CCchhhcCC-CCCCEEECcCCcccccCch----hhh
Q 036375          668 LKVLDLSYSSLSGVIPASLGQLTR---LQSLHLNNNKLTG----NLPSSFQNL-TSLETLDLGNNRFSGNIPS----LLG  735 (1009)
Q Consensus       668 L~~L~Ls~N~l~~~~p~~~~~l~~---L~~L~L~~N~l~~----~~p~~~~~l-~~L~~L~L~~N~l~~~ip~----~l~  735 (1009)
                      |+.|++++|.+.+..+..+..+.+   |++|++++|++++    .+...+..+ ++|+.|++++|.+++..+.    .+.
T Consensus        83 L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~  162 (319)
T cd00116          83 LQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKALR  162 (319)
T ss_pred             eeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHHHH
Confidence            777777766666544444444443   6777776666652    222334445 6666666666666632222    222


Q ss_pred             hcCcCCcEEEccCCccccc----CCcccCCCCCCCEEEccCCcCCCCCChhhhhhhhhhhccchhhhhhccccccceeec
Q 036375          736 NGFVGLRILSLRSNAFSGE----IPSKLSNLSSLQVLDLAENNLTGSIPGSVGDLKAMAHVQNIVKYLLFGRYRGIYYEE  811 (1009)
Q Consensus       736 ~~l~~L~~L~L~~N~l~~~----~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~  811 (1009)
                       .+++|+.|++++|.+++.    ++..+..+++|++|++++|.+++..+..+.....                       
T Consensus       163 -~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~-----------------------  218 (319)
T cd00116         163 -ANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLA-----------------------  218 (319)
T ss_pred             -hCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHHhc-----------------------
Confidence             245566666666666532    2223344456666666666665332221111000                       


Q ss_pred             eEEEeecCCCCCCCCceeEEEccCCccCCCCCccccC-----cCCCCeEEccCCcccc----cCCCCccCCCCCCEEeCC
Q 036375          812 NLVINTKGSSKDTPRLFHFIDLSGNNLHGDFPTQLTK-----LVGLVVLNLSRNHIGG----QIPENISGLHQLASLDLS  882 (1009)
Q Consensus       812 ~~~~~~~~~~~~~~~~l~~L~Ls~N~l~~~~p~~l~~-----l~~L~~L~Ls~N~l~~----~~p~~l~~l~~L~~L~Ls  882 (1009)
                                  ..+.++.||+++|.+++.....+..     .+.|+.|++++|.++.    .+.+.+..+++|+++|++
T Consensus       219 ------------~~~~L~~L~ls~n~l~~~~~~~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~l~l~  286 (319)
T cd00116         219 ------------SLKSLEVLNLGDNNLTDAGAAALASALLSPNISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLR  286 (319)
T ss_pred             ------------ccCCCCEEecCCCcCchHHHHHHHHHHhccCCCceEEEccCCCCCcHHHHHHHHHHhcCCCccEEECC
Confidence                        0012255666666655432222211     2556666666666651    223344445566666666


Q ss_pred             CCcCCCC----CcccccCC-CCCCeEeCCCCc
Q 036375          883 SNNLSGG----IPSSLSSL-SFLGYINLSRNQ  909 (1009)
Q Consensus       883 ~N~l~~~----ip~~l~~l-~~L~~L~ls~N~  909 (1009)
                      +|.++..    ....+... +.|+++|+.+|+
T Consensus       287 ~N~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  318 (319)
T cd00116         287 GNKFGEEGAQLLAESLLEPGNELESLWVKDDS  318 (319)
T ss_pred             CCCCcHHHHHHHHHHHhhcCCchhhcccCCCC
Confidence            6666633    33333333 456666666554

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=99.69  E-value=2.6e-18  Score=190.30  Aligned_cols=255  Identities=25%  Similarity=0.314  Sum_probs=191.0

Q ss_pred             EEEccCCccc-ccCCcccccCCCCCeEEccCCcCCcc----CcCcccCCCCCCEEECCCCcCcc------cCCccccCCC
Q 036375          622 FLSVSGNRLT-GKIPGSIGEMQLLQVIDLSRNSISGS----ISSSIGNCTFLKVLDLSYSSLSG------VIPASLGQLT  690 (1009)
Q Consensus       622 ~L~Ls~n~l~-~~~~~~~~~l~~L~~L~Ls~N~l~~~----~p~~l~~l~~L~~L~Ls~N~l~~------~~p~~~~~l~  690 (1009)
                      .|+|..+.++ ......+..+..|++|+++++.++..    ++..+...+++++++++++.+.+      .++..+..++
T Consensus         2 ~l~L~~~~l~~~~~~~~~~~l~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~   81 (319)
T cd00116           2 QLSLKGELLKTERATELLPKLLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGC   81 (319)
T ss_pred             ccccccCcccccchHHHHHHHhhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcC
Confidence            5778888887 44556677788899999999998543    45567778889999999998873      2345677789


Q ss_pred             CCCEEEccCccccCCCchhhcCCCC---CCEEECcCCccccc----CchhhhhcC-cCCcEEEccCCccccc----CCcc
Q 036375          691 RLQSLHLNNNKLTGNLPSSFQNLTS---LETLDLGNNRFSGN----IPSLLGNGF-VGLRILSLRSNAFSGE----IPSK  758 (1009)
Q Consensus       691 ~L~~L~L~~N~l~~~~p~~~~~l~~---L~~L~L~~N~l~~~----ip~~l~~~l-~~L~~L~L~~N~l~~~----~p~~  758 (1009)
                      +|+.|++++|.+.+..+..+..+..   |+.|++++|++++.    +...+. .+ ++|+.|++++|.+++.    ++..
T Consensus        82 ~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~-~~~~~L~~L~L~~n~l~~~~~~~~~~~  160 (319)
T cd00116          82 GLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLK-DLPPALEKLVLGRNRLEGASCEALAKA  160 (319)
T ss_pred             ceeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCccchHHHHHHHHHHH-hCCCCceEEEcCCCcCCchHHHHHHHH
Confidence            9999999999998777777766665   99999999998742    222333 25 8999999999999843    3445


Q ss_pred             cCCCCCCCEEEccCCcCCCCCChhh-hhhhhhhhccchhhhhhccccccceeeceEEEeecCCCCCCCCceeEEEccCCc
Q 036375          759 LSNLSSLQVLDLAENNLTGSIPGSV-GDLKAMAHVQNIVKYLLFGRYRGIYYEENLVINTKGSSKDTPRLFHFIDLSGNN  837 (1009)
Q Consensus       759 l~~l~~L~~L~Ls~N~l~~~~p~~~-~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~Ls~N~  837 (1009)
                      +..+++|++|++++|.+++.....+ ..+...                                    ..++.|+|++|.
T Consensus       161 ~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~------------------------------------~~L~~L~L~~n~  204 (319)
T cd00116         161 LRANRDLKELNLANNGIGDAGIRALAEGLKAN------------------------------------CNLEVLDLNNNG  204 (319)
T ss_pred             HHhCCCcCEEECcCCCCchHHHHHHHHHHHhC------------------------------------CCCCEEeccCCc
Confidence            6778899999999999986321111 112111                                    123889999999


Q ss_pred             cCCC----CCccccCcCCCCeEEccCCcccccCCCCcc-----CCCCCCEEeCCCCcCC----CCCcccccCCCCCCeEe
Q 036375          838 LHGD----FPTQLTKLVGLVVLNLSRNHIGGQIPENIS-----GLHQLASLDLSSNNLS----GGIPSSLSSLSFLGYIN  904 (1009)
Q Consensus       838 l~~~----~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~-----~l~~L~~L~Ls~N~l~----~~ip~~l~~l~~L~~L~  904 (1009)
                      +++.    ++..+..+++|++|++++|.+++.....+.     ..+.|++|++++|.++    ..++..+..++.|+++|
T Consensus       205 i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~~~~~~~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~l~  284 (319)
T cd00116         205 LTDEGASALAETLASLKSLEVLNLGDNNLTDAGAAALASALLSPNISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELD  284 (319)
T ss_pred             cChHHHHHHHHHhcccCCCCEEecCCCcCchHHHHHHHHHHhccCCCceEEEccCCCCCcHHHHHHHHHHhcCCCccEEE
Confidence            9865    344567788999999999999864333332     2479999999999997    23456677778999999


Q ss_pred             CCCCcceec
Q 036375          905 LSRNQLSGK  913 (1009)
Q Consensus       905 ls~N~l~g~  913 (1009)
                      +++|+++..
T Consensus       285 l~~N~l~~~  293 (319)
T cd00116         285 LRGNKFGEE  293 (319)
T ss_pred             CCCCCCcHH
Confidence            999999744

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]

Probab=99.65  E-value=2.5e-18  Score=155.96  Aligned_cols=166  Identities=34%  Similarity=0.620  Sum_probs=138.0

Q ss_pred             CCCCccEEEccCCcccccCCcccccCCCCCeEEccCCcCCccCcCcccCCCCCCEEECCCCcCcccCCccccCCCCCCEE
Q 036375          616 SMPNLIFLSVSGNRLTGKIPGSIGEMQLLQVIDLSRNSISGSISSSIGNCTFLKVLDLSYSSLSGVIPASLGQLTRLQSL  695 (1009)
Q Consensus       616 ~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L  695 (1009)
                      .+...+.|.+++|+++ .+|..++.+.+|+.|++++|++. ..|..++.++.|+.|+++-|++. ..|..|+.++.|+.|
T Consensus        31 ~~s~ITrLtLSHNKl~-~vppnia~l~nlevln~~nnqie-~lp~~issl~klr~lnvgmnrl~-~lprgfgs~p~levl  107 (264)
T KOG0617|consen   31 NMSNITRLTLSHNKLT-VVPPNIAELKNLEVLNLSNNQIE-ELPTSISSLPKLRILNVGMNRLN-ILPRGFGSFPALEVL  107 (264)
T ss_pred             chhhhhhhhcccCcee-ecCCcHHHhhhhhhhhcccchhh-hcChhhhhchhhhheecchhhhh-cCccccCCCchhhhh
Confidence            3566777778888877 45556788888999999988887 67778888999999999998887 788889999999999


Q ss_pred             EccCcccc-CCCchhhcCCCCCCEEECcCCcccccCchhhhhcCcCCcEEEccCCcccccCCcccCCCCCCCEEEccCCc
Q 036375          696 HLNNNKLT-GNLPSSFQNLTSLETLDLGNNRFSGNIPSLLGNGFVGLRILSLRSNAFSGEIPSKLSNLSSLQVLDLAENN  774 (1009)
Q Consensus       696 ~L~~N~l~-~~~p~~~~~l~~L~~L~L~~N~l~~~ip~~l~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~  774 (1009)
                      ||.+|++. ..+|..|..++.|+.|+|++|.+. .+|..+++ +++|+.|.++.|.+. .+|..++.++.|++|.+.+|+
T Consensus       108 dltynnl~e~~lpgnff~m~tlralyl~dndfe-~lp~dvg~-lt~lqil~lrdndll-~lpkeig~lt~lrelhiqgnr  184 (264)
T KOG0617|consen  108 DLTYNNLNENSLPGNFFYMTTLRALYLGDNDFE-ILPPDVGK-LTNLQILSLRDNDLL-SLPKEIGDLTRLRELHIQGNR  184 (264)
T ss_pred             hccccccccccCCcchhHHHHHHHHHhcCCCcc-cCChhhhh-hcceeEEeeccCchh-hCcHHHHHHHHHHHHhcccce
Confidence            99988886 457888888888999999999987 88888885 899999999999887 788888999999999999999


Q ss_pred             CCCCCChhhhhhhh
Q 036375          775 LTGSIPGSVGDLKA  788 (1009)
Q Consensus       775 l~~~~p~~~~~l~~  788 (1009)
                      ++ .+|..++++.-
T Consensus       185 l~-vlppel~~l~l  197 (264)
T KOG0617|consen  185 LT-VLPPELANLDL  197 (264)
T ss_pred             ee-ecChhhhhhhh
Confidence            88 67777776643

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]

Probab=99.61  E-value=2.2e-17  Score=149.80  Aligned_cols=162  Identities=31%  Similarity=0.564  Sum_probs=92.1

Q ss_pred             CCCCCEEEccCccccCCCchhhcCCCCCCEEECcCCcccccCchhhhhcCcCCcEEEccCCcccccCCcccCCCCCCCEE
Q 036375          689 LTRLQSLHLNNNKLTGNLPSSFQNLTSLETLDLGNNRFSGNIPSLLGNGFVGLRILSLRSNAFSGEIPSKLSNLSSLQVL  768 (1009)
Q Consensus       689 l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~ip~~l~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L  768 (1009)
                      +...+.|.|++|+++ .+|..+..+.+|+.|++++|++. .+|..+.. ++.|+.|+++-|++. ..|..|+.++.|+.|
T Consensus        32 ~s~ITrLtLSHNKl~-~vppnia~l~nlevln~~nnqie-~lp~~iss-l~klr~lnvgmnrl~-~lprgfgs~p~levl  107 (264)
T KOG0617|consen   32 MSNITRLTLSHNKLT-VVPPNIAELKNLEVLNLSNNQIE-ELPTSISS-LPKLRILNVGMNRLN-ILPRGFGSFPALEVL  107 (264)
T ss_pred             hhhhhhhhcccCcee-ecCCcHHHhhhhhhhhcccchhh-hcChhhhh-chhhhheecchhhhh-cCccccCCCchhhhh
Confidence            344445555555555 34445555555555555555555 55555542 566666666666655 667777777777777


Q ss_pred             EccCCcCCC-CCChhhhhhhhhhhccchhhhhhccccccceeeceEEEeecCCCCCCCCceeEEEccCCccCCCCCcccc
Q 036375          769 DLAENNLTG-SIPGSVGDLKAMAHVQNIVKYLLFGRYRGIYYEENLVINTKGSSKDTPRLFHFIDLSGNNLHGDFPTQLT  847 (1009)
Q Consensus       769 ~Ls~N~l~~-~~p~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~Ls~N~l~~~~p~~l~  847 (1009)
                      ||++|++.. .+|+.|.-++.|                                       ..|.|+.|.|. .+|..++
T Consensus       108 dltynnl~e~~lpgnff~m~tl---------------------------------------ralyl~dndfe-~lp~dvg  147 (264)
T KOG0617|consen  108 DLTYNNLNENSLPGNFFYMTTL---------------------------------------RALYLGDNDFE-ILPPDVG  147 (264)
T ss_pred             hccccccccccCCcchhHHHHH---------------------------------------HHHHhcCCCcc-cCChhhh
Confidence            777777653 455555555554                                       33345555554 4555566


Q ss_pred             CcCCCCeEEccCCcccccCCCCccCCCCCCEEeCCCCcCCCCCcccccC
Q 036375          848 KLVGLVVLNLSRNHIGGQIPENISGLHQLASLDLSSNNLSGGIPSSLSS  896 (1009)
Q Consensus       848 ~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~  896 (1009)
                      ++++|+.|.+..|.+- ..|..++.+++|+.|.+.+|+++ .+|..+++
T Consensus       148 ~lt~lqil~lrdndll-~lpkeig~lt~lrelhiqgnrl~-vlppel~~  194 (264)
T KOG0617|consen  148 KLTNLQILSLRDNDLL-SLPKEIGDLTRLRELHIQGNRLT-VLPPELAN  194 (264)
T ss_pred             hhcceeEEeeccCchh-hCcHHHHHHHHHHHHhcccceee-ecChhhhh
Confidence            6666666666666555 34555556666666666666655 33444443

>PLN03150 hypothetical protein; Provisional

Probab=99.58  E-value=4.8e-15  Score=175.69  Aligned_cols=117  Identities=37%  Similarity=0.590  Sum_probs=105.0

Q ss_pred             eeEEEccCCccCCCCCccccCcCCCCeEEccCCcccccCCCCccCCCCCCEEeCCCCcCCCCCcccccCCCCCCeEeCCC
Q 036375          828 FHFIDLSGNNLHGDFPTQLTKLVGLVVLNLSRNHIGGQIPENISGLHQLASLDLSSNNLSGGIPSSLSSLSFLGYINLSR  907 (1009)
Q Consensus       828 l~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~ls~  907 (1009)
                      ++.|+|++|.++|.+|..++.+++|+.|+|++|+++|.+|..++.+++|+.|||++|+++|.+|..++++++|++||+++
T Consensus       420 v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~  499 (623)
T PLN03150        420 IDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNG  499 (623)
T ss_pred             EEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcC
Confidence            48899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CcceecCCCCC--CCCcccCCcCCCCCCCCCCCCCCCCC
Q 036375          908 NQLSGKIPFEG--HMTTFDASSFAGNPGLCGDPLPVKCQ  944 (1009)
Q Consensus       908 N~l~g~ip~~~--~~~~~~~~~~~~n~~lc~~~~~~~c~  944 (1009)
                      |+++|.+|..-  .........+.+|+.+||.|....|.
T Consensus       500 N~l~g~iP~~l~~~~~~~~~l~~~~N~~lc~~p~l~~C~  538 (623)
T PLN03150        500 NSLSGRVPAALGGRLLHRASFNFTDNAGLCGIPGLRACG  538 (623)
T ss_pred             CcccccCChHHhhccccCceEEecCCccccCCCCCCCCc
Confidence            99999999742  12233345789999999987555674

>PLN03150 hypothetical protein; Provisional

Probab=99.41  E-value=7.1e-13  Score=157.29  Aligned_cols=101  Identities=31%  Similarity=0.555  Sum_probs=62.5

Q ss_pred             CCCHHHHHHHHHhhhcCCCCCCCccCCCCCCCC----CccceeecCC--CC--cEEEEecCCCCCCCCCCCCCCcCCEEe
Q 036375           31 NCSENDLDALIDFKNGLEDPESRLASWKGSNCC----QWHGISCDDD--TG--AIVAINLGNPYHVVNSDSSGSLLEYLD  102 (1009)
Q Consensus        31 ~~~~~~~~~ll~~k~~~~~~~~~~~~W~~~~~c----~w~gv~c~~~--~~--~v~~l~l~~~~gi~~~l~~l~~L~~Ld  102 (1009)
                      .+.++|.+||+++|+++.+|..  .+|++..||    .|.||.|...  .+  +|+.|+|+                   
T Consensus       368 ~t~~~~~~aL~~~k~~~~~~~~--~~W~g~~C~p~~~~w~Gv~C~~~~~~~~~~v~~L~L~-------------------  426 (623)
T PLN03150        368 KTLLEEVSALQTLKSSLGLPLR--FGWNGDPCVPQQHPWSGADCQFDSTKGKWFIDGLGLD-------------------  426 (623)
T ss_pred             ccCchHHHHHHHHHHhcCCccc--CCCCCCCCCCcccccccceeeccCCCCceEEEEEECC-------------------
Confidence            4567899999999999876642  489876563    7999999632  22  35565554                   


Q ss_pred             CCCCCCCCCCCCcccCCCCCCceeecccCCCCccCCCCCCCCCCCCeeeCCCc
Q 036375          103 LSFNTFNDIPIPEFLGSLENLQYLNLSEAGFTGVVPSSLGNLHRLQYFDVSAE  155 (1009)
Q Consensus       103 Ls~~~~~~~~lp~~i~~l~~L~~L~Ls~~~~~~~lp~~l~~L~~L~~L~Ls~~  155 (1009)
                        +|.+.+ .+|..++.+++|++|+|++|.+.|.+|..++++++|++|++++|
T Consensus       427 --~n~L~g-~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N  476 (623)
T PLN03150        427 --NQGLRG-FIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYN  476 (623)
T ss_pred             --CCCccc-cCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCC
Confidence              444444 44555555555555555555555555555555555555555544

>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]

Probab=99.24  E-value=3e-13  Score=145.76  Aligned_cols=196  Identities=28%  Similarity=0.483  Sum_probs=152.2

Q ss_pred             CCCCCCEEECCCCcCcccCCccccCCCCCCEEEccCccccCCCchhhcCCCCCCEEECcCCcccccCchhhhhcCcCCcE
Q 036375          664 NCTFLKVLDLSYSSLSGVIPASLGQLTRLQSLHLNNNKLTGNLPSSFQNLTSLETLDLGNNRFSGNIPSLLGNGFVGLRI  743 (1009)
Q Consensus       664 ~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~ip~~l~~~l~~L~~  743 (1009)
                      .+..-...|++.|++. .+|..+..+..|+.+.|..|.+. .+|..+.++..|+.+||+.|+++ .+|..++  .--|+.
T Consensus        73 ~ltdt~~aDlsrNR~~-elp~~~~~f~~Le~liLy~n~~r-~ip~~i~~L~~lt~l~ls~NqlS-~lp~~lC--~lpLkv  147 (722)
T KOG0532|consen   73 DLTDTVFADLSRNRFS-ELPEEACAFVSLESLILYHNCIR-TIPEAICNLEALTFLDLSSNQLS-HLPDGLC--DLPLKV  147 (722)
T ss_pred             cccchhhhhccccccc-cCchHHHHHHHHHHHHHHhccce-ecchhhhhhhHHHHhhhccchhh-cCChhhh--cCccee
Confidence            3455567889999998 67888888888999999999887 78888999999999999999998 8888876  455888


Q ss_pred             EEccCCcccccCCcccCCCCCCCEEEccCCcCCCCCChhhhhhhhhhhccchhhhhhccccccceeeceEEEeecCCCCC
Q 036375          744 LSLRSNAFSGEIPSKLSNLSSLQVLDLAENNLTGSIPGSVGDLKAMAHVQNIVKYLLFGRYRGIYYEENLVINTKGSSKD  823 (1009)
Q Consensus       744 L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  823 (1009)
                      |-+++|+++ .+|..++....|..||.+.|.+. .+|..++.+.+|                                  
T Consensus       148 li~sNNkl~-~lp~~ig~~~tl~~ld~s~nei~-slpsql~~l~sl----------------------------------  191 (722)
T KOG0532|consen  148 LIVSNNKLT-SLPEEIGLLPTLAHLDVSKNEIQ-SLPSQLGYLTSL----------------------------------  191 (722)
T ss_pred             EEEecCccc-cCCcccccchhHHHhhhhhhhhh-hchHHhhhHHHH----------------------------------
Confidence            999999887 78888888888889999999887 677788888877                                  


Q ss_pred             CCCceeEEEccCCccCCCCCccccCcCCCCeEEccCCcccccCCCCccCCCCCCEEeCCCCcCCCCCccccc---CCCCC
Q 036375          824 TPRLFHFIDLSGNNLHGDFPTQLTKLVGLVVLNLSRNHIGGQIPENISGLHQLASLDLSSNNLSGGIPSSLS---SLSFL  900 (1009)
Q Consensus       824 ~~~~l~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~l~---~l~~L  900 (1009)
                           ..|.+..|++. ..|+++..|+ |..||+|.|+++ .||-.|.+|+.|++|-|.+|.|. ..|..+.   ...-.
T Consensus       192 -----r~l~vrRn~l~-~lp~El~~Lp-Li~lDfScNkis-~iPv~fr~m~~Lq~l~LenNPLq-SPPAqIC~kGkVHIF  262 (722)
T KOG0532|consen  192 -----RDLNVRRNHLE-DLPEELCSLP-LIRLDFSCNKIS-YLPVDFRKMRHLQVLQLENNPLQ-SPPAQICEKGKVHIF  262 (722)
T ss_pred             -----HHHHHhhhhhh-hCCHHHhCCc-eeeeecccCcee-ecchhhhhhhhheeeeeccCCCC-CChHHHHhccceeee
Confidence                 34455556555 4566777544 778888888888 67888888888888888888887 4455543   34445


Q ss_pred             CeEeCCCCc
Q 036375          901 GYINLSRNQ  909 (1009)
Q Consensus       901 ~~L~ls~N~  909 (1009)
                      ++|+..-.+
T Consensus       263 KyL~~qA~q  271 (722)
T KOG0532|consen  263 KYLSTQACQ  271 (722)
T ss_pred             eeecchhcc
Confidence            667766664

>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]

Probab=99.22  E-value=6.3e-13  Score=143.36  Aligned_cols=180  Identities=31%  Similarity=0.491  Sum_probs=151.1

Q ss_pred             CCccEEEccCCcCCCcCCchhhcCCCCccEEEccCCcccccCCcccccCCCCCeEEccCCcCCccCcCcccCCCCCCEEE
Q 036375          593 VEIELLDLSNNHFSGPIPQNISGSMPNLIFLSVSGNRLTGKIPGSIGEMQLLQVIDLSRNSISGSISSSIGNCTFLKVLD  672 (1009)
Q Consensus       593 ~~L~~L~Ls~n~l~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~  672 (1009)
                      ..-...|++.|++. .+|..++ .+..|+.+.++.|.+. .+|.+++++..|..++|+.|+++ ..|..++.|+ |+.|-
T Consensus        75 tdt~~aDlsrNR~~-elp~~~~-~f~~Le~liLy~n~~r-~ip~~i~~L~~lt~l~ls~NqlS-~lp~~lC~lp-Lkvli  149 (722)
T KOG0532|consen   75 TDTVFADLSRNRFS-ELPEEAC-AFVSLESLILYHNCIR-TIPEAICNLEALTFLDLSSNQLS-HLPDGLCDLP-LKVLI  149 (722)
T ss_pred             cchhhhhccccccc-cCchHHH-HHHHHHHHHHHhccce-ecchhhhhhhHHHHhhhccchhh-cCChhhhcCc-ceeEE
Confidence            44567788888887 7887665 4677888888888887 67788899999999999999998 6777888886 89999


Q ss_pred             CCCCcCcccCCccccCCCCCCEEEccCccccCCCchhhcCCCCCCEEECcCCcccccCchhhhhcCcCCcEEEccCCccc
Q 036375          673 LSYSSLSGVIPASLGQLTRLQSLHLNNNKLTGNLPSSFQNLTSLETLDLGNNRFSGNIPSLLGNGFVGLRILSLRSNAFS  752 (1009)
Q Consensus       673 Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~ip~~l~~~l~~L~~L~L~~N~l~  752 (1009)
                      +++|+++ .+|+.++.++.|..||.+.|.+. .+|..+.++.+|+.|.+..|++. .+|..+.  .-.|..||++.|+++
T Consensus       150 ~sNNkl~-~lp~~ig~~~tl~~ld~s~nei~-slpsql~~l~slr~l~vrRn~l~-~lp~El~--~LpLi~lDfScNkis  224 (722)
T KOG0532|consen  150 VSNNKLT-SLPEEIGLLPTLAHLDVSKNEIQ-SLPSQLGYLTSLRDLNVRRNHLE-DLPEELC--SLPLIRLDFSCNKIS  224 (722)
T ss_pred             EecCccc-cCCcccccchhHHHhhhhhhhhh-hchHHhhhHHHHHHHHHhhhhhh-hCCHHHh--CCceeeeecccCcee
Confidence            9999998 67888888889999999999988 67888999999999999999998 8888876  456888999999998


Q ss_pred             ccCCcccCCCCCCCEEEccCCcCCCCCChhhh
Q 036375          753 GEIPSKLSNLSSLQVLDLAENNLTGSIPGSVG  784 (1009)
Q Consensus       753 ~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~  784 (1009)
                       .+|-.|.+|+.|++|-|.+|++. ..|.++.
T Consensus       225 -~iPv~fr~m~~Lq~l~LenNPLq-SPPAqIC  254 (722)
T KOG0532|consen  225 -YLPVDFRKMRHLQVLQLENNPLQ-SPPAQIC  254 (722)
T ss_pred             -ecchhhhhhhhheeeeeccCCCC-CChHHHH
Confidence             88999999999999999999997 4455443

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=99.17  E-value=4e-11  Score=136.64  Aligned_cols=123  Identities=37%  Similarity=0.613  Sum_probs=74.5

Q ss_pred             eEEccCCcCCccCcCcccCCCCCCEEECCCCcCcccCCccccCCC-CCCEEEccCccccCCCchhhcCCCCCCEEECcCC
Q 036375          646 VIDLSRNSISGSISSSIGNCTFLKVLDLSYSSLSGVIPASLGQLT-RLQSLHLNNNKLTGNLPSSFQNLTSLETLDLGNN  724 (1009)
Q Consensus       646 ~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~-~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N  724 (1009)
                      .++++.|.+...+ ..+...+.++.|++.+|.++. +|....... +|+.|++++|++. .+|..+..+++|+.|++++|
T Consensus        97 ~l~~~~~~~~~~~-~~~~~~~~l~~L~l~~n~i~~-i~~~~~~~~~nL~~L~l~~N~i~-~l~~~~~~l~~L~~L~l~~N  173 (394)
T COG4886          97 SLDLNLNRLRSNI-SELLELTNLTSLDLDNNNITD-IPPLIGLLKSNLKELDLSDNKIE-SLPSPLRNLPNLKNLDLSFN  173 (394)
T ss_pred             eeeccccccccCc-hhhhcccceeEEecCCccccc-Cccccccchhhcccccccccchh-hhhhhhhccccccccccCCc
Confidence            4666666653222 234444667777777777773 444444443 6777777777776 45555667777777777777


Q ss_pred             cccccCchhhhhcCcCCcEEEccCCcccccCCcccCCCCCCCEEEccCCc
Q 036375          725 RFSGNIPSLLGNGFVGLRILSLRSNAFSGEIPSKLSNLSSLQVLDLAENN  774 (1009)
Q Consensus       725 ~l~~~ip~~l~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~  774 (1009)
                      ++. .+|.... ..+.|+.|++++|++. .+|........|+++++++|+
T Consensus       174 ~l~-~l~~~~~-~~~~L~~L~ls~N~i~-~l~~~~~~~~~L~~l~~~~N~  220 (394)
T COG4886         174 DLS-DLPKLLS-NLSNLNNLDLSGNKIS-DLPPEIELLSALEELDLSNNS  220 (394)
T ss_pred             hhh-hhhhhhh-hhhhhhheeccCCccc-cCchhhhhhhhhhhhhhcCCc
Confidence            776 5555543 2566666666666666 455544445556666666664

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=99.15  E-value=4.4e-11  Score=136.33  Aligned_cols=148  Identities=36%  Similarity=0.530  Sum_probs=79.8

Q ss_pred             EEEccCCcccccCCcccccCCCCCeEEccCCcCCccCcCcccCCC-CCCEEECCCCcCcccCCccccCCCCCCEEEccCc
Q 036375          622 FLSVSGNRLTGKIPGSIGEMQLLQVIDLSRNSISGSISSSIGNCT-FLKVLDLSYSSLSGVIPASLGQLTRLQSLHLNNN  700 (1009)
Q Consensus       622 ~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~-~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N  700 (1009)
                      .+++..|.+...+. .+...+.++.|++.+|.++ .++....... +|+.|++++|++. .+|..++.+++|+.|++++|
T Consensus        97 ~l~~~~~~~~~~~~-~~~~~~~l~~L~l~~n~i~-~i~~~~~~~~~nL~~L~l~~N~i~-~l~~~~~~l~~L~~L~l~~N  173 (394)
T COG4886          97 SLDLNLNRLRSNIS-ELLELTNLTSLDLDNNNIT-DIPPLIGLLKSNLKELDLSDNKIE-SLPSPLRNLPNLKNLDLSFN  173 (394)
T ss_pred             eeeccccccccCch-hhhcccceeEEecCCcccc-cCccccccchhhcccccccccchh-hhhhhhhccccccccccCCc
Confidence            45555555532221 2233355666666666666 3333444443 6666666666666 33344556666666666666


Q ss_pred             cccCCCchhhcCCCCCCEEECcCCcccccCchhhhhcCcCCcEEEccCCcccccCCcccCCCCCCCEEEccCCcCC
Q 036375          701 KLTGNLPSSFQNLTSLETLDLGNNRFSGNIPSLLGNGFVGLRILSLRSNAFSGEIPSKLSNLSSLQVLDLAENNLT  776 (1009)
Q Consensus       701 ~l~~~~p~~~~~l~~L~~L~L~~N~l~~~ip~~l~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~  776 (1009)
                      +++ .+|......+.|+.|++++|++. .+|.... ....|+.+.+++|+.. .++..+.++.++..+.+++|++.
T Consensus       174 ~l~-~l~~~~~~~~~L~~L~ls~N~i~-~l~~~~~-~~~~L~~l~~~~N~~~-~~~~~~~~~~~l~~l~l~~n~~~  245 (394)
T COG4886         174 DLS-DLPKLLSNLSNLNNLDLSGNKIS-DLPPEIE-LLSALEELDLSNNSII-ELLSSLSNLKNLSGLELSNNKLE  245 (394)
T ss_pred             hhh-hhhhhhhhhhhhhheeccCCccc-cCchhhh-hhhhhhhhhhcCCcce-ecchhhhhcccccccccCCceee
Confidence            666 34444445566666666666665 5665542 1444666666666432 33444555555555555555443

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]

Probab=98.98  E-value=1.2e-10  Score=122.52  Aligned_cols=85  Identities=29%  Similarity=0.305  Sum_probs=47.3

Q ss_pred             eEEEccCCccCCCC-CccccCcCCCCeEEccCCccccc-CCCC-----ccCCCCCCEEeCCCCcCCCC-CcccccCCCCC
Q 036375          829 HFIDLSGNNLHGDF-PTQLTKLVGLVVLNLSRNHIGGQ-IPEN-----ISGLHQLASLDLSSNNLSGG-IPSSLSSLSFL  900 (1009)
Q Consensus       829 ~~L~Ls~N~l~~~~-p~~l~~l~~L~~L~Ls~N~l~~~-~p~~-----l~~l~~L~~L~Ls~N~l~~~-ip~~l~~l~~L  900 (1009)
                      +.|||++|++-... -...+.++.|..|+++.+.+..+ +|+.     .....+|++|++++|++... --..+..+.+|
T Consensus       249 ~~LdLs~N~li~~~~~~~~~~l~~L~~Lnls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~~w~sl~~l~~l~nl  328 (505)
T KOG3207|consen  249 QELDLSNNNLIDFDQGYKVGTLPGLNQLNLSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNIRDWRSLNHLRTLENL  328 (505)
T ss_pred             hhccccCCcccccccccccccccchhhhhccccCcchhcCCCccchhhhcccccceeeecccCccccccccchhhccchh
Confidence            45555555554221 12355666677777777776643 2322     34566777777777777521 11223345566


Q ss_pred             CeEeCCCCcceec
Q 036375          901 GYINLSRNQLSGK  913 (1009)
Q Consensus       901 ~~L~ls~N~l~g~  913 (1009)
                      ..|....|.|+-+
T Consensus       329 k~l~~~~n~ln~e  341 (505)
T KOG3207|consen  329 KHLRITLNYLNKE  341 (505)
T ss_pred             hhhhccccccccc
Confidence            6666667766543

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]

Probab=98.95  E-value=2.3e-10  Score=120.34  Aligned_cols=164  Identities=21%  Similarity=0.170  Sum_probs=83.3

Q ss_pred             cCCCCCCeEEcCCccCCCCcchhhhhhcCCCCccEEEcCCCcCCCCCCCCCCCCCCCCcEEECCCCCCCCCchh-hhhcC
Q 036375          168 TGLVSLKHLAMNRVDLSLVGSEWLGILKNLPNLTELHLSVCGLTGSITSITPVNLTSPAVLDLSLNHFNSLFPN-WLVNI  246 (1009)
Q Consensus       168 ~~l~~L~~L~l~~~~l~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~-~l~~l  246 (1009)
                      ..|+.++.|+++.|-+..... +......+|+|+.|+|+.|++...........+++|+.|.++.|.++..--. .+..+
T Consensus       143 k~~~~v~~LdLS~NL~~nw~~-v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~~lK~L~l~~CGls~k~V~~~~~~f  221 (505)
T KOG3207|consen  143 KILPNVRDLDLSRNLFHNWFP-VLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLSHLKQLVLNSCGLSWKDVQWILLTF  221 (505)
T ss_pred             hhCCcceeecchhhhHHhHHH-HHHHHHhcccchhcccccccccCCccccchhhhhhhheEEeccCCCCHHHHHHHHHhC
Confidence            334555555555544444322 4444566777777777777665544444334556666666666666533222 23356


Q ss_pred             CCCcEEEccCCcCcccCCcccCCCCCCCEEEcCCCCCCCCcccccccCCCCCccEEEccccccccc-CCcc-----ccCC
Q 036375          247 STLVYVDLSDCDLYGRIPIGFGELPNLQYLSLAGNNNLSGSCSQLFRGSWKKIQILNFASNKLHGK-LPSS-----VANM  320 (1009)
Q Consensus       247 ~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~-~p~~-----l~~l  320 (1009)
                      ++|+.|+|..|.....-.....-+..|++|+|++|++ .....-...+.++.|+.|+++.|.+... .|+.     ...+
T Consensus       222 Psl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~l-i~~~~~~~~~~l~~L~~Lnls~tgi~si~~~d~~s~~kt~~f  300 (505)
T KOG3207|consen  222 PSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNL-IDFDQGYKVGTLPGLNQLNLSSTGIASIAEPDVESLDKTHTF  300 (505)
T ss_pred             CcHHHhhhhcccccceecchhhhhhHHhhccccCCcc-cccccccccccccchhhhhccccCcchhcCCCccchhhhccc
Confidence            6666666666642222222233445566666666653 2222223345555566666655554431 1211     2344


Q ss_pred             CCCCEEEccCCcc
Q 036375          321 TSLTNFDLFDKKV  333 (1009)
Q Consensus       321 ~~L~~L~l~~n~~  333 (1009)
                      ++|+.|++..|++
T Consensus       301 ~kL~~L~i~~N~I  313 (505)
T KOG3207|consen  301 PKLEYLNISENNI  313 (505)
T ss_pred             ccceeeecccCcc
Confidence            5555555555555

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]

Probab=98.93  E-value=2.9e-10  Score=113.21  Aligned_cols=84  Identities=31%  Similarity=0.390  Sum_probs=56.0

Q ss_pred             eEEEccCCccCCCCCccccCcCCCCeEEccCCcccccCCCCccCCCCCCEEeCCCCcCCCC-CcccccCCCCCCeEeCCC
Q 036375          829 HFIDLSGNNLHGDFPTQLTKLVGLVVLNLSRNHIGGQIPENISGLHQLASLDLSSNNLSGG-IPSSLSSLSFLGYINLSR  907 (1009)
Q Consensus       829 ~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~-ip~~l~~l~~L~~L~ls~  907 (1009)
                      +.||||+|.++. +-..=.++-+.+.|+|+.|.+...  ..++++-+|..||++.|+|... .-..+++++-|+.+.+.+
T Consensus       332 ~~LDLS~N~Ls~-~~Gwh~KLGNIKtL~La~N~iE~L--SGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~  408 (490)
T KOG1259|consen  332 QLLDLSGNLLAE-CVGWHLKLGNIKTLKLAQNKIETL--SGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTG  408 (490)
T ss_pred             eEeecccchhHh-hhhhHhhhcCEeeeehhhhhHhhh--hhhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcC
Confidence            444555554441 222223445567788888877644  4577788888888888888743 225678888889999999


Q ss_pred             CcceecCC
Q 036375          908 NQLSGKIP  915 (1009)
Q Consensus       908 N~l~g~ip  915 (1009)
                      |++.+.+-
T Consensus       409 NPl~~~vd  416 (490)
T KOG1259|consen  409 NPLAGSVD  416 (490)
T ss_pred             CCccccch
Confidence            98887643

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]

Probab=98.92  E-value=2.5e-10  Score=113.66  Aligned_cols=131  Identities=31%  Similarity=0.325  Sum_probs=82.3

Q ss_pred             cccCCCEEEcCCCcCCCCCCccccccccccCCCCCCCCCcEEECcCCcCcccCChhhcCCCCCCEEeCcCCcccccCCCC
Q 036375          343 RLCYLKEFDLSGNNLTGSLPEILQGTDLCVSSNSPLPSLISMRLGNNHLKGKLPEWLSQLENLVELTLSYNLLQGPIPAS  422 (1009)
Q Consensus       343 ~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~  422 (1009)
                      ..+.|+++|+++|.++..... ..          -.|.++.|++++|.+...  ..+..+++|+.|||++|.++ .+..+
T Consensus       282 TWq~LtelDLS~N~I~~iDES-vK----------L~Pkir~L~lS~N~i~~v--~nLa~L~~L~~LDLS~N~Ls-~~~Gw  347 (490)
T KOG1259|consen  282 TWQELTELDLSGNLITQIDES-VK----------LAPKLRRLILSQNRIRTV--QNLAELPQLQLLDLSGNLLA-ECVGW  347 (490)
T ss_pred             hHhhhhhccccccchhhhhhh-hh----------hccceeEEeccccceeee--hhhhhcccceEeecccchhH-hhhhh
Confidence            344566666666665532211 11          356777777777776632  23666777777777777766 33444


Q ss_pred             CCCCCCCcEEeCCCCcCCCCCCcccCCCCCCCEEEccCcccccccchhhhccCCCCcEEeCCCCccc
Q 036375          423 LGNLKNLTKLNLPGNQLNGTLPETLGSLPELSVLDVSSNSLTGIISEIHFSRLSKLKFLGLSSNSFI  489 (1009)
Q Consensus       423 l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~  489 (1009)
                      -..+-++++|.|++|.+...  ..++.+-+|..||+++|++...-....++++|-|+.+.+.+|++.
T Consensus       348 h~KLGNIKtL~La~N~iE~L--SGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~  412 (490)
T KOG1259|consen  348 HLKLGNIKTLKLAQNKIETL--SGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPLA  412 (490)
T ss_pred             HhhhcCEeeeehhhhhHhhh--hhhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCCcc
Confidence            55667777777777776533  346667777777777777765444445677777777777777664

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=98.91  E-value=1.3e-09  Score=105.47  Aligned_cols=16  Identities=44%  Similarity=0.806  Sum_probs=2.8

Q ss_pred             CCCCCCEEEccCcccc
Q 036375          688 QLTRLQSLHLNNNKLT  703 (1009)
Q Consensus       688 ~l~~L~~L~L~~N~l~  703 (1009)
                      .++.|+.|++++|+++
T Consensus        62 ~L~~L~~L~L~~N~I~   77 (175)
T PF14580_consen   62 GLPRLKTLDLSNNRIS   77 (175)
T ss_dssp             --TT--EEE--SS---
T ss_pred             ChhhhhhcccCCCCCC
Confidence            3333444444444433

>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]

Probab=98.90  E-value=3.6e-10  Score=115.79  Aligned_cols=110  Identities=26%  Similarity=0.306  Sum_probs=63.3

Q ss_pred             CCCcEEECcCCcCcc----cCChhhcCCCCCCEEeCcCCcccccC----CCCCCCCCCCcEEeCCCCcCCCCCCccc---
Q 036375          379 PSLISMRLGNNHLKG----KLPEWLSQLENLVELTLSYNLLQGPI----PASLGNLKNLTKLNLPGNQLNGTLPETL---  447 (1009)
Q Consensus       379 ~~L~~L~L~~n~l~~----~~~~~l~~l~~L~~L~Ls~n~l~~~~----p~~l~~l~~L~~L~L~~n~l~~~~p~~l---  447 (1009)
                      +.|+++.+..|.+..    .+...+..|++|+.|||.+|.++...    ...+..+++|+.|++++|.+...-...+   
T Consensus       185 ~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~dcll~~~Ga~a~~~a  264 (382)
T KOG1909|consen  185 PTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGDCLLENEGAIAFVDA  264 (382)
T ss_pred             cccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeecccccccccccHHHHHHH
Confidence            445555555554431    12334666777777777777665321    2344556677777777777664332222   


Q ss_pred             --CCCCCCCEEEccCcccccc---cchhhhccCCCCcEEeCCCCcc
Q 036375          448 --GSLPELSVLDVSSNSLTGI---ISEIHFSRLSKLKFLGLSSNSF  488 (1009)
Q Consensus       448 --~~l~~L~~L~Ls~n~l~~~---~~~~~~~~l~~L~~L~L~~n~l  488 (1009)
                        ...|+|+.|.+.+|.++..   .........+.|+.|++++|.+
T Consensus       265 l~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~l  310 (382)
T KOG1909|consen  265 LKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNRL  310 (382)
T ss_pred             HhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCcccc
Confidence              2357777777777776632   1122344567777777777766

>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]

Probab=98.87  E-value=1.1e-10  Score=119.54  Aligned_cols=66  Identities=29%  Similarity=0.407  Sum_probs=36.2

Q ss_pred             hhcCCCCCCEEeCcCCcccccCCCCC-----CCCCCCcEEeCCCCcCCCC----CCcccCCCCCCCEEEccCccc
Q 036375          398 WLSQLENLVELTLSYNLLQGPIPASL-----GNLKNLTKLNLPGNQLNGT----LPETLGSLPELSVLDVSSNSL  463 (1009)
Q Consensus       398 ~l~~l~~L~~L~Ls~n~l~~~~p~~l-----~~l~~L~~L~L~~n~l~~~----~p~~l~~l~~L~~L~Ls~n~l  463 (1009)
                      .+..+++|++|++++|.+......+|     ...++|++|.+.+|.++..    +...+...+.|+.|+|++|.+
T Consensus       236 aL~s~~~L~El~l~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~l  310 (382)
T KOG1909|consen  236 ALSSWPHLRELNLGDCLLENEGAIAFVDALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNRL  310 (382)
T ss_pred             HhcccchheeecccccccccccHHHHHHHHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCcccc
Confidence            34455566666666665553322221     2356667777777666532    112234466777777777776

>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]

Probab=98.85  E-value=3.9e-10  Score=128.47  Aligned_cols=248  Identities=27%  Similarity=0.341  Sum_probs=143.7

Q ss_pred             CCCccEEEccCCcccccCCcccccCCCCCeEEccCCcCCccCcCcccCCCCCCEEECCCCcCcccCCccccCCCCCCEEE
Q 036375          617 MPNLIFLSVSGNRLTGKIPGSIGEMQLLQVIDLSRNSISGSISSSIGNCTFLKVLDLSYSSLSGVIPASLGQLTRLQSLH  696 (1009)
Q Consensus       617 l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~  696 (1009)
                      +..++.+.+..|.+.. +-..++.+++|+.|++.+|++..+. ..+..+++|++|++++|+|+..  ..+..++.|+.|+
T Consensus        71 l~~l~~l~l~~n~i~~-~~~~l~~~~~l~~l~l~~n~i~~i~-~~l~~~~~L~~L~ls~N~I~~i--~~l~~l~~L~~L~  146 (414)
T KOG0531|consen   71 LTSLKELNLRQNLIAK-ILNHLSKLKSLEALDLYDNKIEKIE-NLLSSLVNLQVLDLSFNKITKL--EGLSTLTLLKELN  146 (414)
T ss_pred             hHhHHhhccchhhhhh-hhcccccccceeeeeccccchhhcc-cchhhhhcchheeccccccccc--cchhhccchhhhe
Confidence            4445555555555553 2223555666777777777766432 2256667777777777777655  2355566677777


Q ss_pred             ccCccccCCCchhhcCCCCCCEEECcCCcccccCchhhhhcCcCCcEEEccCCcccccCCcccCCCCCCCEEEccCCcCC
Q 036375          697 LNNNKLTGNLPSSFQNLTSLETLDLGNNRFSGNIPSLLGNGFVGLRILSLRSNAFSGEIPSKLSNLSSLQVLDLAENNLT  776 (1009)
Q Consensus       697 L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~ip~~l~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~  776 (1009)
                      +++|.++..  ..+..++.|+.+++++|.+. .+.......+.+++.+.+.+|.+..  ...+..+..+..+++..|.++
T Consensus       147 l~~N~i~~~--~~~~~l~~L~~l~l~~n~i~-~ie~~~~~~~~~l~~l~l~~n~i~~--i~~~~~~~~l~~~~l~~n~i~  221 (414)
T KOG0531|consen  147 LSGNLISDI--SGLESLKSLKLLDLSYNRIV-DIENDELSELISLEELDLGGNSIRE--IEGLDLLKKLVLLSLLDNKIS  221 (414)
T ss_pred             eccCcchhc--cCCccchhhhcccCCcchhh-hhhhhhhhhccchHHHhccCCchhc--ccchHHHHHHHHhhcccccce
Confidence            777777633  34555667777777777776 3333101236667777777776642  223344444455566666665


Q ss_pred             CCCChhhhhhhhhhhccchhhhhhccccccceeeceEEEeecCCCCCCCCceeEEEccCCccCCCCCccccCcCCCCeEE
Q 036375          777 GSIPGSVGDLKAMAHVQNIVKYLLFGRYRGIYYEENLVINTKGSSKDTPRLFHFIDLSGNNLHGDFPTQLTKLVGLVVLN  856 (1009)
Q Consensus       777 ~~~p~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~Ls~N~l~~~~p~~l~~l~~L~~L~  856 (1009)
                      ..-+..  .+..+                                     .++.+++++|.+. .++..+..+..+..|+
T Consensus       222 ~~~~l~--~~~~~-------------------------------------~L~~l~l~~n~i~-~~~~~~~~~~~l~~l~  261 (414)
T KOG0531|consen  222 KLEGLN--ELVML-------------------------------------HLRELYLSGNRIS-RSPEGLENLKNLPVLD  261 (414)
T ss_pred             eccCcc--cchhH-------------------------------------HHHHHhcccCccc-cccccccccccccccc
Confidence            321110  00000                                     1255667777776 3335566777788888


Q ss_pred             ccCCcccccCCCCccCCCCCCEEeCCCCcCCCC---Cccc-ccCCCCCCeEeCCCCcceecCC
Q 036375          857 LSRNHIGGQIPENISGLHQLASLDLSSNNLSGG---IPSS-LSSLSFLGYINLSRNQLSGKIP  915 (1009)
Q Consensus       857 Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~---ip~~-l~~l~~L~~L~ls~N~l~g~ip  915 (1009)
                      ++.|++...  ..+.....+..+.++.|.+...   .... .+....+....+.+|+.....+
T Consensus       262 ~~~n~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  322 (414)
T KOG0531|consen  262 LSSNRISNL--EGLERLPKLSELWLNDNKLALSEAISQEYITSAAPTLVTLTLELNPIRKISS  322 (414)
T ss_pred             hhhcccccc--ccccccchHHHhccCcchhcchhhhhccccccccccccccccccCccccccc
Confidence            888887754  3455566677777777776521   1121 4556777888888887776554

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=98.82  E-value=5e-09  Score=101.43  Aligned_cols=125  Identities=32%  Similarity=0.410  Sum_probs=49.6

Q ss_pred             ccCCCCCCEEECCCCcCcccCCcccc-CCCCCCEEEccCccccCCCchhhcCCCCCCEEECcCCcccccCchhhhhcCcC
Q 036375          662 IGNCTFLKVLDLSYSSLSGVIPASLG-QLTRLQSLHLNNNKLTGNLPSSFQNLTSLETLDLGNNRFSGNIPSLLGNGFVG  740 (1009)
Q Consensus       662 l~~l~~L~~L~Ls~N~l~~~~p~~~~-~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~ip~~l~~~l~~  740 (1009)
                      +.++..+++|+|++|.|+.+  +.++ .+.+|+.|++++|.++..  +.+..++.|++|++++|+++ .++..+...+++
T Consensus        15 ~~n~~~~~~L~L~~n~I~~I--e~L~~~l~~L~~L~Ls~N~I~~l--~~l~~L~~L~~L~L~~N~I~-~i~~~l~~~lp~   89 (175)
T PF14580_consen   15 YNNPVKLRELNLRGNQISTI--ENLGATLDKLEVLDLSNNQITKL--EGLPGLPRLKTLDLSNNRIS-SISEGLDKNLPN   89 (175)
T ss_dssp             -----------------------S--TT-TT--EEE-TTS--S----TT----TT--EEE--SS----S-CHHHHHH-TT
T ss_pred             cccccccccccccccccccc--cchhhhhcCCCEEECCCCCCccc--cCccChhhhhhcccCCCCCC-ccccchHHhCCc
Confidence            45566789999999999854  3465 578999999999999854  36888999999999999998 676655445899


Q ss_pred             CcEEEccCCcccccC-CcccCCCCCCCEEEccCCcCCCCCCh----hhhhhhhhhhc
Q 036375          741 LRILSLRSNAFSGEI-PSKLSNLSSLQVLDLAENNLTGSIPG----SVGDLKAMAHV  792 (1009)
Q Consensus       741 L~~L~L~~N~l~~~~-p~~l~~l~~L~~L~Ls~N~l~~~~p~----~~~~l~~L~~~  792 (1009)
                      |+.|++++|++...- -..+..+++|+.|++.+|+++.. +.    .+..+++|+.+
T Consensus        90 L~~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~~-~~YR~~vi~~lP~Lk~L  145 (175)
T PF14580_consen   90 LQELYLSNNKISDLNELEPLSSLPKLRVLSLEGNPVCEK-KNYRLFVIYKLPSLKVL  145 (175)
T ss_dssp             --EEE-TTS---SCCCCGGGGG-TT--EEE-TT-GGGGS-TTHHHHHHHH-TT-SEE
T ss_pred             CCEEECcCCcCCChHHhHHHHcCCCcceeeccCCcccch-hhHHHHHHHHcChhhee
Confidence            999999999997522 24577899999999999999844 32    34455555443

>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]

Probab=98.81  E-value=6.2e-10  Score=126.79  Aligned_cols=220  Identities=32%  Similarity=0.377  Sum_probs=157.5

Q ss_pred             ccCCCCCeEEccCCcCCccCcCcccCCCCCCEEECCCCcCcccCCccccCCCCCCEEEccCccccCCCchhhcCCCCCCE
Q 036375          639 GEMQLLQVIDLSRNSISGSISSSIGNCTFLKVLDLSYSSLSGVIPASLGQLTRLQSLHLNNNKLTGNLPSSFQNLTSLET  718 (1009)
Q Consensus       639 ~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~  718 (1009)
                      ..+..++.+.+..|.+.. +-..+..+++|+.|++.+|+|..+.. .+..+++|++|++++|.|+..  ..+..++.|+.
T Consensus        69 ~~l~~l~~l~l~~n~i~~-~~~~l~~~~~l~~l~l~~n~i~~i~~-~l~~~~~L~~L~ls~N~I~~i--~~l~~l~~L~~  144 (414)
T KOG0531|consen   69 ESLTSLKELNLRQNLIAK-ILNHLSKLKSLEALDLYDNKIEKIEN-LLSSLVNLQVLDLSFNKITKL--EGLSTLTLLKE  144 (414)
T ss_pred             HHhHhHHhhccchhhhhh-hhcccccccceeeeeccccchhhccc-chhhhhcchheeccccccccc--cchhhccchhh
Confidence            446677788888888874 33457788899999999999986532 267788999999999999865  34667777999


Q ss_pred             EECcCCcccccCchhhhhcCcCCcEEEccCCcccccCC-cccCCCCCCCEEEccCCcCCCCCChhhhhhhhhhhccchhh
Q 036375          719 LDLGNNRFSGNIPSLLGNGFVGLRILSLRSNAFSGEIP-SKLSNLSSLQVLDLAENNLTGSIPGSVGDLKAMAHVQNIVK  797 (1009)
Q Consensus       719 L~L~~N~l~~~ip~~l~~~l~~L~~L~L~~N~l~~~~p-~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~~~~~~~  797 (1009)
                      |++++|.+. .++..-  .++.|+.+++++|.+...-+ . ...+.+++.+++++|.+...  ..+..+..+        
T Consensus       145 L~l~~N~i~-~~~~~~--~l~~L~~l~l~~n~i~~ie~~~-~~~~~~l~~l~l~~n~i~~i--~~~~~~~~l--------  210 (414)
T KOG0531|consen  145 LNLSGNLIS-DISGLE--SLKSLKLLDLSYNRIVDIENDE-LSELISLEELDLGGNSIREI--EGLDLLKKL--------  210 (414)
T ss_pred             heeccCcch-hccCCc--cchhhhcccCCcchhhhhhhhh-hhhccchHHHhccCCchhcc--cchHHHHHH--------
Confidence            999999987 555432  27888889999998874433 2 56778888888888887632  122222222        


Q ss_pred             hhhccccccceeeceEEEeecCCCCCCCCceeEEEccCCccCCCCCccccCcC--CCCeEEccCCcccccCCCCccCCCC
Q 036375          798 YLLFGRYRGIYYEENLVINTKGSSKDTPRLFHFIDLSGNNLHGDFPTQLTKLV--GLVVLNLSRNHIGGQIPENISGLHQ  875 (1009)
Q Consensus       798 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~Ls~N~l~~~~p~~l~~l~--~L~~L~Ls~N~l~~~~p~~l~~l~~  875 (1009)
                                                     ..+++..|.++-.-+  +..+.  .|+.+++++|++. .+++.+..+..
T Consensus       211 -------------------------------~~~~l~~n~i~~~~~--l~~~~~~~L~~l~l~~n~i~-~~~~~~~~~~~  256 (414)
T KOG0531|consen  211 -------------------------------VLLSLLDNKISKLEG--LNELVMLHLRELYLSGNRIS-RSPEGLENLKN  256 (414)
T ss_pred             -------------------------------HHhhcccccceeccC--cccchhHHHHHHhcccCccc-ccccccccccc
Confidence                                           334677777764322  12222  3889999999998 44467888899


Q ss_pred             CCEEeCCCCcCCCCCcccccCCCCCCeEeCCCCccee
Q 036375          876 LASLDLSSNNLSGGIPSSLSSLSFLGYINLSRNQLSG  912 (1009)
Q Consensus       876 L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~ls~N~l~g  912 (1009)
                      +..||+++|++...  ..+.....+..+....|.+..
T Consensus       257 l~~l~~~~n~~~~~--~~~~~~~~~~~~~~~~~~~~~  291 (414)
T KOG0531|consen  257 LPVLDLSSNRISNL--EGLERLPKLSELWLNDNKLAL  291 (414)
T ss_pred             ccccchhhcccccc--ccccccchHHHhccCcchhcc
Confidence            99999999999865  345566778888888888763

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=98.78  E-value=3.2e-09  Score=84.29  Aligned_cols=60  Identities=42%  Similarity=0.598  Sum_probs=41.1

Q ss_pred             CCCeEEccCCcccccCCCCccCCCCCCEEeCCCCcCCCCCcccccCCCCCCeEeCCCCcc
Q 036375          851 GLVVLNLSRNHIGGQIPENISGLHQLASLDLSSNNLSGGIPSSLSSLSFLGYINLSRNQL  910 (1009)
Q Consensus       851 ~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~ls~N~l  910 (1009)
                      +|++|++++|+++...++.|.++++|++|++++|+++...|..|.++++|++|++++|+|
T Consensus         2 ~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l   61 (61)
T PF13855_consen    2 NLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL   61 (61)
T ss_dssp             TESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred             cCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence            466677777777766666667777777777777777666666677777777777777654

...

>PF08263 LRRNT_2: Leucine rich repeat N-terminal domain; InterPro: IPR013210 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=98.76  E-value=7.6e-09  Score=74.76  Aligned_cols=38  Identities=45%  Similarity=1.018  Sum_probs=30.1

Q ss_pred             HHHHHHHHHhhhcCC-CCCCCccCCCC---CCCCCccceeec
Q 036375           34 ENDLDALIDFKNGLE-DPESRLASWKG---SNCCQWHGISCD   71 (1009)
Q Consensus        34 ~~~~~~ll~~k~~~~-~~~~~~~~W~~---~~~c~w~gv~c~   71 (1009)
                      ++|++||++||+++. +|.+.+.+|+.   ++||.|.||+|+
T Consensus         2 ~~d~~aLl~~k~~l~~~~~~~l~~W~~~~~~~~C~W~GV~Cd   43 (43)
T PF08263_consen    2 NQDRQALLAFKKSLNNDPSGVLSSWNPSSDSDPCSWSGVTCD   43 (43)
T ss_dssp             HHHHHHHHHHHHCTT-SC-CCCTT--TT--S-CCCSTTEEE-
T ss_pred             cHHHHHHHHHHHhcccccCcccccCCCcCCCCCeeeccEEeC
Confidence            689999999999999 67788999983   689999999996

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. This domain is often found at the N terminus of tandem leucine rich repeats.; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1OGQ_A.

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]

Probab=98.70  E-value=7.3e-09  Score=125.62  Aligned_cols=85  Identities=29%  Similarity=0.314  Sum_probs=41.2

Q ss_pred             hcCCCCccEEEcCCCcCCCCCCCCCCCCCCCCcEEECCCCCCCCCchhhhhcCCCCcEEEccCCcCcccCCcccCCCCCC
Q 036375          194 LKNLPNLTELHLSVCGLTGSITSITPVNLTSPAVLDLSLNHFNSLFPNWLVNISTLVYVDLSDCDLYGRIPIGFGELPNL  273 (1009)
Q Consensus       194 l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L  273 (1009)
                      +..++.|++|||++|.--+..|..+ +.+-+|++|++++..+. .+|..+.+++.|.+|++..+.....+|.....+++|
T Consensus       567 f~~m~~LrVLDLs~~~~l~~LP~~I-~~Li~LryL~L~~t~I~-~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~L  644 (889)
T KOG4658|consen  567 FRSLPLLRVLDLSGNSSLSKLPSSI-GELVHLRYLDLSDTGIS-HLPSGLGNLKKLIYLNLEVTGRLESIPGILLELQSL  644 (889)
T ss_pred             HhhCcceEEEECCCCCccCcCChHH-hhhhhhhcccccCCCcc-ccchHHHHHHhhheeccccccccccccchhhhcccc
Confidence            4445555555555544444444443 44555555555555544 234555555555555555554433344333445555


Q ss_pred             CEEEcCC
Q 036375          274 QYLSLAG  280 (1009)
Q Consensus       274 ~~L~L~~  280 (1009)
                      ++|.+..
T Consensus       645 r~L~l~~  651 (889)
T KOG4658|consen  645 RVLRLPR  651 (889)
T ss_pred             cEEEeec
Confidence            5555443

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]

Probab=98.66  E-value=3.5e-10  Score=112.76  Aligned_cols=198  Identities=20%  Similarity=0.183  Sum_probs=105.7

Q ss_pred             cCCEEeCCCCCCCCCCCCcccCCCCCCceeecccCCCCccCCCCCCCCCCCCeeeCCCccccccCCCcccccCCCCCCeE
Q 036375           97 LLEYLDLSFNTFNDIPIPEFLGSLENLQYLNLSEAGFTGVVPSSLGNLHRLQYFDVSAELFALSADSLDWLTGLVSLKHL  176 (1009)
Q Consensus        97 ~L~~LdLs~~~~~~~~lp~~i~~l~~L~~L~Ls~~~~~~~lp~~l~~L~~L~~L~Ls~~~~~~~~~~~~~l~~l~~L~~L  176 (1009)
                      .|++||||...++...+-..++.|.+|+.|.|.++.+.+.+-..+++-.+|+.||++.+.                    
T Consensus       186 Rlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~s--------------------  245 (419)
T KOG2120|consen  186 RLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCS--------------------  245 (419)
T ss_pred             hhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeecccccc--------------------
Confidence            478888888777654444556677788888888887777776777777777777777762                    


Q ss_pred             EcCCccCCCCcchhhhhhcCCCCccEEEcCCCcCCCCCCCCCCCC-CCCCcEEECCCCCC---CCCchhhhhcCCCCcEE
Q 036375          177 AMNRVDLSLVGSEWLGILKNLPNLTELHLSVCGLTGSITSITPVN-LTSPAVLDLSLNHF---NSLFPNWLVNISTLVYV  252 (1009)
Q Consensus       177 ~l~~~~l~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~-l~~L~~L~L~~n~~---~~~~p~~l~~l~~L~~L  252 (1009)
                           .++.  ...--.+.+|+.|.+|+|++|.+..++....... -++|..|+++++.-   ...+..-.         
T Consensus       246 -----G~t~--n~~~ll~~scs~L~~LNlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~---------  309 (419)
T KOG2120|consen  246 -----GFTE--NALQLLLSSCSRLDELNLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLV---------  309 (419)
T ss_pred             -----ccch--hHHHHHHHhhhhHhhcCchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHH---------
Confidence                 1111  1123345677777777777777655442221111 12344444444321   01111112         


Q ss_pred             EccCCcCcccCCcccCCCCCCCEEEcCCCCCCCCcccccccCCCCCccEEEcccccccccCCc---cccCCCCCCEEEcc
Q 036375          253 DLSDCDLYGRIPIGFGELPNLQYLSLAGNNNLSGSCSQLFRGSWKKIQILNFASNKLHGKLPS---SVANMTSLTNFDLF  329 (1009)
Q Consensus       253 ~L~~n~~~~~~p~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~---~l~~l~~L~~L~l~  329 (1009)
                                     .++++|.+|||+.|..... .....+.+++.|++|.++.|.  +.+|.   .+...|.|.+|++.
T Consensus       310 ---------------~rcp~l~~LDLSD~v~l~~-~~~~~~~kf~~L~~lSlsRCY--~i~p~~~~~l~s~psl~yLdv~  371 (419)
T KOG2120|consen  310 ---------------RRCPNLVHLDLSDSVMLKN-DCFQEFFKFNYLQHLSLSRCY--DIIPETLLELNSKPSLVYLDVF  371 (419)
T ss_pred             ---------------HhCCceeeeccccccccCc-hHHHHHHhcchheeeehhhhc--CCChHHeeeeccCcceEEEEec
Confidence                           2445555555554432222 222233345555555555553  23343   34567788888877


Q ss_pred             CCcccccCchhhhcccCCC
Q 036375          330 DKKVEGGIPSSIARLCYLK  348 (1009)
Q Consensus       330 ~n~~~~~~~~~l~~l~~L~  348 (1009)
                      ++--.+...-....+++|+
T Consensus       372 g~vsdt~mel~~e~~~~lk  390 (419)
T KOG2120|consen  372 GCVSDTTMELLKEMLSHLK  390 (419)
T ss_pred             cccCchHHHHHHHhCcccc
Confidence            6644333333334445544

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=98.66  E-value=1.9e-08  Score=79.86  Aligned_cols=60  Identities=38%  Similarity=0.494  Sum_probs=56.6

Q ss_pred             ceeEEEccCCccCCCCCccccCcCCCCeEEccCCcccccCCCCccCCCCCCEEeCCCCcC
Q 036375          827 LFHFIDLSGNNLHGDFPTQLTKLVGLVVLNLSRNHIGGQIPENISGLHQLASLDLSSNNL  886 (1009)
Q Consensus       827 ~l~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l  886 (1009)
                      .++.|++++|+++...+..|.++++|++|++++|+++...|++|.++++|++|++++|+|
T Consensus         2 ~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l   61 (61)
T PF13855_consen    2 NLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL   61 (61)
T ss_dssp             TESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred             cCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence            358999999999988888999999999999999999999999999999999999999986

...

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]

Probab=98.60  E-value=1.1e-07  Score=115.66  Aligned_cols=274  Identities=27%  Similarity=0.285  Sum_probs=170.8

Q ss_pred             CCccEEEccCCcC-CCcCCchhhcCCCCccEEEccCCcccccCCcccccCCCCCeEEccCCcCCccCcCcccCCCCCCEE
Q 036375          593 VEIELLDLSNNHF-SGPIPQNISGSMPNLIFLSVSGNRLTGKIPGSIGEMQLLQVIDLSRNSISGSISSSIGNCTFLKVL  671 (1009)
Q Consensus       593 ~~L~~L~Ls~n~l-~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L  671 (1009)
                      +.|++|-+..|.. ...++..+|..++.|.+||+++|.-.+..|..++++-+|++|++++..+. .+|..++++..|.+|
T Consensus       545 ~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~I~-~LP~~l~~Lk~L~~L  623 (889)
T KOG4658|consen  545 PKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTGIS-HLPSGLGNLKKLIYL  623 (889)
T ss_pred             CccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCCCcc-ccchHHHHHHhhhee
Confidence            4688888888862 34788888999999999999999888899999999999999999999998 789999999999999


Q ss_pred             ECCCCcCcccCCccccCCCCCCEEEccCccc--cCCCchhhcCCCCCCEEECcCCcccccCchhhhhcCcCC----cEEE
Q 036375          672 DLSYSSLSGVIPASLGQLTRLQSLHLNNNKL--TGNLPSSFQNLTSLETLDLGNNRFSGNIPSLLGNGFVGL----RILS  745 (1009)
Q Consensus       672 ~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l--~~~~p~~~~~l~~L~~L~L~~N~l~~~ip~~l~~~l~~L----~~L~  745 (1009)
                      ++..+.....+|.....+++|++|.+..-..  +...-..+..+..|+.+.......  .+-..+. .++.|    +.+.
T Consensus       624 nl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~~~~~~~~l~el~~Le~L~~ls~~~~s~--~~~e~l~-~~~~L~~~~~~l~  700 (889)
T KOG4658|consen  624 NLEVTGRLESIPGILLELQSLRVLRLPRSALSNDKLLLKELENLEHLENLSITISSV--LLLEDLL-GMTRLRSLLQSLS  700 (889)
T ss_pred             ccccccccccccchhhhcccccEEEeeccccccchhhHHhhhcccchhhheeecchh--HhHhhhh-hhHHHHHHhHhhh
Confidence            9999887777788778899999999976542  223334456666666666643332  0111111 12222    2333


Q ss_pred             ccCCcccccCCcccCCCCCCCEEEccCCcCCCCCChhhhhhhhhhhccchhhhhhccccccceeeceEEEeecCCCCCCC
Q 036375          746 LRSNAFSGEIPSKLSNLSSLQVLDLAENNLTGSIPGSVGDLKAMAHVQNIVKYLLFGRYRGIYYEENLVINTKGSSKDTP  825 (1009)
Q Consensus       746 L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  825 (1009)
                      +.++... ..+..+..+.+|+.|.+.++.++............+..+.+.......          +...........++
T Consensus       701 ~~~~~~~-~~~~~~~~l~~L~~L~i~~~~~~e~~~~~~~~~~~~~~f~~l~~~~~~----------~~~~~r~l~~~~f~  769 (889)
T KOG4658|consen  701 IEGCSKR-TLISSLGSLGNLEELSILDCGISEIVIEWEESLIVLLCFPNLSKVSIL----------NCHMLRDLTWLLFA  769 (889)
T ss_pred             hcccccc-eeecccccccCcceEEEEcCCCchhhcccccccchhhhHHHHHHHHhh----------ccccccccchhhcc
Confidence            3333333 445567889999999999998864333221111111000000000000          00000001111345


Q ss_pred             CceeEEEccCCccCCCCCccccCcCCCCeEEccCCccccc-CCCCccCCCCCCEEeC
Q 036375          826 RLFHFIDLSGNNLHGDFPTQLTKLVGLVVLNLSRNHIGGQ-IPENISGLHQLASLDL  881 (1009)
Q Consensus       826 ~~l~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~-~p~~l~~l~~L~~L~L  881 (1009)
                      ..++.|.+.+...-..+.+....+..++.+-+..+.+.+. .-...++++++..+.+
T Consensus       770 ~~L~~l~l~~~~~~e~~i~~~k~~~~l~~~i~~f~~~~~l~~~~~l~~l~~i~~~~l  826 (889)
T KOG4658|consen  770 PHLTSLSLVSCRLLEDIIPKLKALLELKELILPFNKLEGLRMLCSLGGLPQLYWLPL  826 (889)
T ss_pred             CcccEEEEecccccccCCCHHHHhhhcccEEecccccccceeeecCCCCceeEeccc
Confidence            5667777777666666655566666666666666666665 3344444554444443

>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]

Probab=98.49  E-value=4.5e-09  Score=116.92  Aligned_cols=103  Identities=26%  Similarity=0.245  Sum_probs=71.2

Q ss_pred             eEEEccCCccCCCCCccccCcCCCCeEEccCCcccccCCCCccCCCCCCEEeCCCCcCCCCCcccccCCCCCCeEeCCCC
Q 036375          829 HFIDLSGNNLHGDFPTQLTKLVGLVVLNLSRNHIGGQIPENISGLHQLASLDLSSNNLSGGIPSSLSSLSFLGYINLSRN  908 (1009)
Q Consensus       829 ~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~ls~N  908 (1009)
                      +.||||+|+++...  .+..+..|++|||++|.++-..--...++. |+.|++++|.++..  ..+.+|.+|+.||||+|
T Consensus       190 e~LnLshNk~~~v~--~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc~-L~~L~lrnN~l~tL--~gie~LksL~~LDlsyN  264 (1096)
T KOG1859|consen  190 ESLNLSHNKFTKVD--NLRRLPKLKHLDLSYNCLRHVPQLSMVGCK-LQLLNLRNNALTTL--RGIENLKSLYGLDLSYN  264 (1096)
T ss_pred             hhhccchhhhhhhH--HHHhcccccccccccchhccccccchhhhh-heeeeecccHHHhh--hhHHhhhhhhccchhHh
Confidence            77888888887544  677888888888888888854333344444 88888888888754  46678888888888888


Q ss_pred             cceecCC--CCCCCCcccCCcCCCCCCCCC
Q 036375          909 QLSGKIP--FEGHMTTFDASSFAGNPGLCG  936 (1009)
Q Consensus       909 ~l~g~ip--~~~~~~~~~~~~~~~n~~lc~  936 (1009)
                      -|++.--  ....+..+....++|||.-|.
T Consensus       265 ll~~hseL~pLwsLs~L~~L~LeGNPl~c~  294 (1096)
T KOG1859|consen  265 LLSEHSELEPLWSLSSLIVLWLEGNPLCCA  294 (1096)
T ss_pred             hhhcchhhhHHHHHHHHHHHhhcCCccccC
Confidence            7776421  112233445566788887773

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]

Probab=98.48  E-value=3.4e-09  Score=105.93  Aligned_cols=161  Identities=20%  Similarity=0.156  Sum_probs=93.7

Q ss_pred             hhcCCCCccEEEcCCCcCCCCCCCCCCCCCCCCcEEECCCCC-CCCCc-hhhhhcCCCCcEEEccCCcCcccCCcc-cCC
Q 036375          193 ILKNLPNLTELHLSVCGLTGSITSITPVNLTSPAVLDLSLNH-FNSLF-PNWLVNISTLVYVDLSDCDLYGRIPIG-FGE  269 (1009)
Q Consensus       193 ~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~-~~~~~-p~~l~~l~~L~~L~L~~n~~~~~~p~~-l~~  269 (1009)
                      .++.|.+|+.|.|.++++.+.+...+ +.-..|+.|+++.+. ++... .-.+.+|+.|..|+|+.|......-.. +..
T Consensus       205 iLs~C~kLk~lSlEg~~LdD~I~~~i-AkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~LNlsWc~l~~~~Vtv~V~h  283 (419)
T KOG2120|consen  205 ILSQCSKLKNLSLEGLRLDDPIVNTI-AKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDELNLSWCFLFTEKVTVAVAH  283 (419)
T ss_pred             HHHHHHhhhhccccccccCcHHHHHH-hccccceeeccccccccchhHHHHHHHhhhhHhhcCchHhhccchhhhHHHhh
Confidence            33444444444444444444333322 333444444444432 11111 113456777777777777654332111 111


Q ss_pred             -CCCCCEEEcCCCCCCC-CcccccccCCCCCccEEEccccc-ccccCCccccCCCCCCEEEccCCcccccCchh---hhc
Q 036375          270 -LPNLQYLSLAGNNNLS-GSCSQLFRGSWKKIQILNFASNK-LHGKLPSSVANMTSLTNFDLFDKKVEGGIPSS---IAR  343 (1009)
Q Consensus       270 -l~~L~~L~L~~n~~~~-~~~~~~~~~~~~~L~~L~l~~n~-l~~~~p~~l~~l~~L~~L~l~~n~~~~~~~~~---l~~  343 (1009)
                       -++|+.|+++|+.... ...+......+++|..||+++|. +....-..|.+++.|++|.++.|-.  .+|..   +..
T Consensus       284 ise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lSlsRCY~--i~p~~~~~l~s  361 (419)
T KOG2120|consen  284 ISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLSLSRCYD--IIPETLLELNS  361 (419)
T ss_pred             hchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHHhcchheeeehhhhcC--CChHHeeeecc
Confidence             2568888888875322 22344556789999999999985 4434445677899999999998853  35554   456


Q ss_pred             ccCCCEEEcCCCc
Q 036375          344 LCYLKEFDLSGNN  356 (1009)
Q Consensus       344 l~~L~~L~l~~n~  356 (1009)
                      .+.|.+|++.++-
T Consensus       362 ~psl~yLdv~g~v  374 (419)
T KOG2120|consen  362 KPSLVYLDVFGCV  374 (419)
T ss_pred             CcceEEEEecccc
Confidence            7889999999874

>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]

Probab=98.40  E-value=7.9e-09  Score=115.04  Aligned_cols=180  Identities=29%  Similarity=0.296  Sum_probs=116.0

Q ss_pred             CccccCCCCCCEEEccCccccCCCchhhcCC-CCCCEEECcCCccc----------ccCchhhhhcCcCCcEEEccCCcc
Q 036375          683 PASLGQLTRLQSLHLNNNKLTGNLPSSFQNL-TSLETLDLGNNRFS----------GNIPSLLGNGFVGLRILSLRSNAF  751 (1009)
Q Consensus       683 p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l-~~L~~L~L~~N~l~----------~~ip~~l~~~l~~L~~L~L~~N~l  751 (1009)
                      |-.+....+|++|.+.++.+..  ..++..+ ..|+.|- ..|.+.          |.+.....  ...|...+.++|.+
T Consensus       102 pi~ifpF~sLr~LElrg~~L~~--~~GL~~lr~qLe~LI-C~~Sl~Al~~v~ascggd~~ns~~--Wn~L~~a~fsyN~L  176 (1096)
T KOG1859|consen  102 PISIFPFRSLRVLELRGCDLST--AKGLQELRHQLEKLI-CHNSLDALRHVFASCGGDISNSPV--WNKLATASFSYNRL  176 (1096)
T ss_pred             CceeccccceeeEEecCcchhh--hhhhHHHHHhhhhhh-hhccHHHHHHHHHHhccccccchh--hhhHhhhhcchhhH
Confidence            4456677899999999999873  1222222 2344332 222221          11111110  13466777888888


Q ss_pred             cccCCcccCCCCCCCEEEccCCcCCCCCChhhhhhhhhhhccchhhhhhccccccceeeceEEEeecCCCCCCCCceeEE
Q 036375          752 SGEIPSKLSNLSSLQVLDLAENNLTGSIPGSVGDLKAMAHVQNIVKYLLFGRYRGIYYEENLVINTKGSSKDTPRLFHFI  831 (1009)
Q Consensus       752 ~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L  831 (1009)
                      . .....+.-++.|+.|||++|+++..-  .+..+..|                                       +.|
T Consensus       177 ~-~mD~SLqll~ale~LnLshNk~~~v~--~Lr~l~~L---------------------------------------khL  214 (1096)
T KOG1859|consen  177 V-LMDESLQLLPALESLNLSHNKFTKVD--NLRRLPKL---------------------------------------KHL  214 (1096)
T ss_pred             H-hHHHHHHHHHHhhhhccchhhhhhhH--HHHhcccc---------------------------------------ccc
Confidence            7 45566777888888999999887431  33334433                                       788


Q ss_pred             EccCCccCCCCCccccCcCCCCeEEccCCcccccCCCCccCCCCCCEEeCCCCcCCCCC-cccccCCCCCCeEeCCCCcc
Q 036375          832 DLSGNNLHGDFPTQLTKLVGLVVLNLSRNHIGGQIPENISGLHQLASLDLSSNNLSGGI-PSSLSSLSFLGYINLSRNQL  910 (1009)
Q Consensus       832 ~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~i-p~~l~~l~~L~~L~ls~N~l  910 (1009)
                      |||+|.++...--.-..++ |+.|++++|.++..  ..+.+|.+|+.||+|+|-|++.- -..+..|.+|..|+|.+|++
T Consensus       215 DlsyN~L~~vp~l~~~gc~-L~~L~lrnN~l~tL--~gie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl  291 (1096)
T KOG1859|consen  215 DLSYNCLRHVPQLSMVGCK-LQLLNLRNNALTTL--RGIENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPL  291 (1096)
T ss_pred             ccccchhccccccchhhhh-heeeeecccHHHhh--hhHHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCcc
Confidence            8899988843322333444 88899999988755  45778888999999999887641 13345677888889999988


Q ss_pred             ee
Q 036375          911 SG  912 (1009)
Q Consensus       911 ~g  912 (1009)
                      ..
T Consensus       292 ~c  293 (1096)
T KOG1859|consen  292 CC  293 (1096)
T ss_pred             cc
Confidence            64

>KOG4341 consensus F-box protein containing LRR [General function prediction only]

Probab=98.20  E-value=5.4e-08  Score=102.30  Aligned_cols=302  Identities=17%  Similarity=0.110  Sum_probs=144.9

Q ss_pred             cCCEEeCCCCCCCCC-CCCcccCCCCCCceeecccCCCC-ccCCCCC-CCCCCCCeeeCCCccccccCCCcccc-cCCCC
Q 036375           97 LLEYLDLSFNTFNDI-PIPEFLGSLENLQYLNLSEAGFT-GVVPSSL-GNLHRLQYFDVSAELFALSADSLDWL-TGLVS  172 (1009)
Q Consensus        97 ~L~~LdLs~~~~~~~-~lp~~i~~l~~L~~L~Ls~~~~~-~~lp~~l-~~L~~L~~L~Ls~~~~~~~~~~~~~l-~~l~~  172 (1009)
                      .||.|.+.++.-.+. ++-.+-.+++++++|++.+|... +..-.++ ..+++|++|++..|. .+....+..+ ..+++
T Consensus       139 ~lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~-~iT~~~Lk~la~gC~k  217 (483)
T KOG4341|consen  139 FLKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCS-SITDVSLKYLAEGCRK  217 (483)
T ss_pred             ccccccccccccCCcchhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccc-hhHHHHHHHHHHhhhh
Confidence            456666666543221 22334456666666666666422 1111112 346666666666642 1111222222 23666


Q ss_pred             CCeEEcCCccCCCCcchhhhhhcCCCCccEEEcCCCcCCC-CCCCCCCCCCCCCcEEECCCCC-CCCCchhhh-hcCCCC
Q 036375          173 LKHLAMNRVDLSLVGSEWLGILKNLPNLTELHLSVCGLTG-SITSITPVNLTSPAVLDLSLNH-FNSLFPNWL-VNISTL  249 (1009)
Q Consensus       173 L~~L~l~~~~l~~~~~~~~~~l~~l~~L~~L~L~~n~l~~-~~~~~~~~~l~~L~~L~L~~n~-~~~~~p~~l-~~l~~L  249 (1009)
                      |++++++.++--.. ..+-...+++..++.+.+.+|.-.+ +.-....+.+..+-++++..+. +++..-..+ ..+..|
T Consensus       218 L~~lNlSwc~qi~~-~gv~~~~rG~~~l~~~~~kGC~e~~le~l~~~~~~~~~i~~lnl~~c~~lTD~~~~~i~~~c~~l  296 (483)
T KOG4341|consen  218 LKYLNLSWCPQISG-NGVQALQRGCKELEKLSLKGCLELELEALLKAAAYCLEILKLNLQHCNQLTDEDLWLIACGCHAL  296 (483)
T ss_pred             HHHhhhccCchhhc-CcchHHhccchhhhhhhhcccccccHHHHHHHhccChHhhccchhhhccccchHHHHHhhhhhHh
Confidence            66666666542221 1133344556666666666553111 1111111233334444444442 222211111 245667


Q ss_pred             cEEEccCCcCcccCC-ccc-CCCCCCCEEEcCCCCCCCCcccccccCCCCCccEEEcccccccc--cCCccccCCCCCCE
Q 036375          250 VYVDLSDCDLYGRIP-IGF-GELPNLQYLSLAGNNNLSGSCSQLFRGSWKKIQILNFASNKLHG--KLPSSVANMTSLTN  325 (1009)
Q Consensus       250 ~~L~L~~n~~~~~~p-~~l-~~l~~L~~L~L~~n~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~--~~p~~l~~l~~L~~  325 (1009)
                      +.|+.++|...+..+ .++ .++.+|+.|.+++|+..........-.+++.|+.+++..+....  .+..--.+++.|++
T Consensus       297 q~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls~~C~~lr~  376 (483)
T KOG4341|consen  297 QVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLASLSRNCPRLRV  376 (483)
T ss_pred             hhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhhHhhhccCCchhcc
Confidence            777777665432211 122 34567777777777654444455555566777777777664321  12222235677777


Q ss_pred             EEccCCcccccC-----chhhhcccCCCEEEcCCCcCCCCC-CccccccccccCCCCCCCCCcEEECcCCcCcc--cCCh
Q 036375          326 FDLFDKKVEGGI-----PSSIARLCYLKEFDLSGNNLTGSL-PEILQGTDLCVSSNSPLPSLISMRLGNNHLKG--KLPE  397 (1009)
Q Consensus       326 L~l~~n~~~~~~-----~~~l~~l~~L~~L~l~~n~l~~~~-~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~--~~~~  397 (1009)
                      +.+++|......     ...-..+..|+.+.++++..+... -+.+.          .+++|+.+++.+++-..  .+..
T Consensus       377 lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~----------~c~~Leri~l~~~q~vtk~~i~~  446 (483)
T KOG4341|consen  377 LSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDATLEHLS----------ICRNLERIELIDCQDVTKEAISR  446 (483)
T ss_pred             CChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHHHHHHHh----------hCcccceeeeechhhhhhhhhHH
Confidence            777766543221     111233456777777777644211 11111          46677777777765321  1222


Q ss_pred             hhcCCCCCCEEeC
Q 036375          398 WLSQLENLVELTL  410 (1009)
Q Consensus       398 ~l~~l~~L~~L~L  410 (1009)
                      .-.++|+++...+
T Consensus       447 ~~~~lp~i~v~a~  459 (483)
T KOG4341|consen  447 FATHLPNIKVHAY  459 (483)
T ss_pred             HHhhCccceehhh
Confidence            3345666665543

>KOG4341 consensus F-box protein containing LRR [General function prediction only]

Probab=98.13  E-value=1.4e-07  Score=99.17  Aligned_cols=207  Identities=15%  Similarity=0.128  Sum_probs=114.1

Q ss_pred             CCCceeecccCCCCccCC--CCCCCCCCCCeeeCCCccccccCCCcccccC-CCCCCeEEcCCc-cCCCCcchhhhhhcC
Q 036375          121 ENLQYLNLSEAGFTGVVP--SSLGNLHRLQYFDVSAELFALSADSLDWLTG-LVSLKHLAMNRV-DLSLVGSEWLGILKN  196 (1009)
Q Consensus       121 ~~L~~L~Ls~~~~~~~lp--~~l~~L~~L~~L~Ls~~~~~~~~~~~~~l~~-l~~L~~L~l~~~-~l~~~~~~~~~~l~~  196 (1009)
                      ..|+.|.++++.-.+.-+  ....+++++++|++.++. ...+.....+.+ +++|+++++..+ .++.  ..+......
T Consensus       138 g~lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~-~iTd~s~~sla~~C~~l~~l~L~~c~~iT~--~~Lk~la~g  214 (483)
T KOG4341|consen  138 GFLKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCK-KITDSSLLSLARYCRKLRHLNLHSCSSITD--VSLKYLAEG  214 (483)
T ss_pred             cccccccccccccCCcchhhHHhhhCCchhhhhhhcce-eccHHHHHHHHHhcchhhhhhhcccchhHH--HHHHHHHHh
Confidence            468899999987554322  234678999999999985 444455555555 888999888774 3333  111223467


Q ss_pred             CCCccEEEcCCCc-CCCCCCCCCCCCCCCCcEEECCCCCCCCCchhhh----hcCCCCcEEEccCCcCcccCC--cccCC
Q 036375          197 LPNLTELHLSVCG-LTGSITSITPVNLTSPAVLDLSLNHFNSLFPNWL----VNISTLVYVDLSDCDLYGRIP--IGFGE  269 (1009)
Q Consensus       197 l~~L~~L~L~~n~-l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~l----~~l~~L~~L~L~~n~~~~~~p--~~l~~  269 (1009)
                      +++|+++++++|. +.+.-......++..++.+.+.+|.-.+  .+.+    +.+..+..+++..|.......  ..-..
T Consensus       215 C~kL~~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kGC~e~~--le~l~~~~~~~~~i~~lnl~~c~~lTD~~~~~i~~~  292 (483)
T KOG4341|consen  215 CRKLKYLNLSWCPQISGNGVQALQRGCKELEKLSLKGCLELE--LEALLKAAAYCLEILKLNLQHCNQLTDEDLWLIACG  292 (483)
T ss_pred             hhhHHHhhhccCchhhcCcchHHhccchhhhhhhhccccccc--HHHHHHHhccChHhhccchhhhccccchHHHHHhhh
Confidence            8899999999884 5543333444556666666666543221  1222    234445666666664322111  11124


Q ss_pred             CCCCCEEEcCCCCCCCCcccccccCCCCCccEEEccccc-ccccCCcccc-CCCCCCEEEccCCc
Q 036375          270 LPNLQYLSLAGNNNLSGSCSQLFRGSWKKIQILNFASNK-LHGKLPSSVA-NMTSLTNFDLFDKK  332 (1009)
Q Consensus       270 l~~L~~L~L~~n~~~~~~~~~~~~~~~~~L~~L~l~~n~-l~~~~p~~l~-~l~~L~~L~l~~n~  332 (1009)
                      +..||.|+.+++.......+.....++.+|++|.++.|+ |+..--..++ +++.|+.+++..+.
T Consensus       293 c~~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~  357 (483)
T KOG4341|consen  293 CHALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECG  357 (483)
T ss_pred             hhHhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccc
Confidence            566777777766432222233334455666666666664 2211111121 44555555555543

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.10  E-value=9.1e-07  Score=88.88  Aligned_cols=64  Identities=30%  Similarity=0.330  Sum_probs=41.2

Q ss_pred             CCCCCeEEcCCccCCCCcchhhhhhcCCCCccEEEcCCCcCCCCCCCCCCCCCCCCcEEECCCCCC
Q 036375          170 LVSLKHLAMNRVDLSLVGSEWLGILKNLPNLTELHLSVCGLTGSITSITPVNLTSPAVLDLSLNHF  235 (1009)
Q Consensus       170 l~~L~~L~l~~~~l~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~~  235 (1009)
                      ++.++++++..|.++...+ +...+.++|.|+.|+|+.|++...|.... ....+|++|-|.+..+
T Consensus        70 ~~~v~elDL~~N~iSdWse-I~~ile~lP~l~~LNls~N~L~s~I~~lp-~p~~nl~~lVLNgT~L  133 (418)
T KOG2982|consen   70 VTDVKELDLTGNLISDWSE-IGAILEQLPALTTLNLSCNSLSSDIKSLP-LPLKNLRVLVLNGTGL  133 (418)
T ss_pred             hhhhhhhhcccchhccHHH-HHHHHhcCccceEeeccCCcCCCccccCc-ccccceEEEEEcCCCC
Confidence            5667777777777776444 56667888888888888888776554332 3344555555444433

>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]

Probab=98.00  E-value=2.5e-07  Score=82.04  Aligned_cols=91  Identities=26%  Similarity=0.245  Sum_probs=48.3

Q ss_pred             CCCCeEEccCCcCCccCcCcccCCCCCCEEECCCCcCcccCCccccCCCCCCEEEccCccccCCCchhhcCCCCCCEEEC
Q 036375          642 QLLQVIDLSRNSISGSISSSIGNCTFLKVLDLSYSSLSGVIPASLGQLTRLQSLHLNNNKLTGNLPSSFQNLTSLETLDL  721 (1009)
Q Consensus       642 ~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L  721 (1009)
                      ..|+..+|++|.+....+..-...+..+.|++++|+++ .+|+.+..++.|+.|+++.|.+. ..|..+..+.++-.|+.
T Consensus        53 ~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~neis-dvPeE~Aam~aLr~lNl~~N~l~-~~p~vi~~L~~l~~Lds  130 (177)
T KOG4579|consen   53 YELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNEIS-DVPEELAAMPALRSLNLRFNPLN-AEPRVIAPLIKLDMLDS  130 (177)
T ss_pred             ceEEEEecccchhhhCCHHHhhccchhhhhhcchhhhh-hchHHHhhhHHhhhcccccCccc-cchHHHHHHHhHHHhcC
Confidence            34445555555555333322233345556666666665 34555666666666666666655 34455555555556666


Q ss_pred             cCCcccccCchhhh
Q 036375          722 GNNRFSGNIPSLLG  735 (1009)
Q Consensus       722 ~~N~l~~~ip~~l~  735 (1009)
                      .+|.+. .||..++
T Consensus       131 ~~na~~-eid~dl~  143 (177)
T KOG4579|consen  131 PENARA-EIDVDLF  143 (177)
T ss_pred             CCCccc-cCcHHHh
Confidence            555554 5554433

>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]

Probab=97.99  E-value=9.3e-07  Score=78.54  Aligned_cols=94  Identities=24%  Similarity=0.409  Sum_probs=48.1

Q ss_pred             CCEEEccCccccCCCchh---hcCCCCCCEEECcCCcccccCchhhhhcCcCCcEEEccCCcccccCCcccCCCCCCCEE
Q 036375          692 LQSLHLNNNKLTGNLPSS---FQNLTSLETLDLGNNRFSGNIPSLLGNGFVGLRILSLRSNAFSGEIPSKLSNLSSLQVL  768 (1009)
Q Consensus       692 L~~L~L~~N~l~~~~p~~---~~~l~~L~~L~L~~N~l~~~ip~~l~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L  768 (1009)
                      +-.++|++|++. .++..   +.....|+..+|++|.+. .+|..+...++.++.|++++|+++ .+|.++..++.|+.|
T Consensus        29 ~h~ldLssc~lm-~i~davy~l~~~~el~~i~ls~N~fk-~fp~kft~kf~t~t~lNl~~neis-dvPeE~Aam~aLr~l  105 (177)
T KOG4579|consen   29 LHFLDLSSCQLM-YIADAVYMLSKGYELTKISLSDNGFK-KFPKKFTIKFPTATTLNLANNEIS-DVPEELAAMPALRSL  105 (177)
T ss_pred             hhhcccccchhh-HHHHHHHHHhCCceEEEEecccchhh-hCCHHHhhccchhhhhhcchhhhh-hchHHHhhhHHhhhc
Confidence            334455555443 22222   233334445566666655 455544433455566666666665 455556666666666


Q ss_pred             EccCCcCCCCCChhhhhhhhh
Q 036375          769 DLAENNLTGSIPGSVGDLKAM  789 (1009)
Q Consensus       769 ~Ls~N~l~~~~p~~~~~l~~L  789 (1009)
                      +++.|++. ..|..+..|.++
T Consensus       106 Nl~~N~l~-~~p~vi~~L~~l  125 (177)
T KOG4579|consen  106 NLRFNPLN-AEPRVIAPLIKL  125 (177)
T ss_pred             ccccCccc-cchHHHHHHHhH
Confidence            66666665 334444444444

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.78  E-value=5.3e-06  Score=83.52  Aligned_cols=62  Identities=19%  Similarity=0.246  Sum_probs=29.9

Q ss_pred             CCCcEEeCCCCcCCCCCC-cccCCCCCCCEEEccCcccccccchhhhccCCCCcEEeCCCCcc
Q 036375          427 KNLTKLNLPGNQLNGTLP-ETLGSLPELSVLDVSSNSLTGIISEIHFSRLSKLKFLGLSSNSF  488 (1009)
Q Consensus       427 ~~L~~L~L~~n~l~~~~p-~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~l  488 (1009)
                      +++..+.+..|.+...-. .....++.+..|+|+.|++..-.....+.++++|..|.++.+++
T Consensus       199 pnv~sv~v~e~PlK~~s~ek~se~~p~~~~LnL~~~~idswasvD~Ln~f~~l~dlRv~~~Pl  261 (418)
T KOG2982|consen  199 PNVNSVFVCEGPLKTESSEKGSEPFPSLSCLNLGANNIDSWASVDALNGFPQLVDLRVSENPL  261 (418)
T ss_pred             ccchheeeecCcccchhhcccCCCCCcchhhhhcccccccHHHHHHHcCCchhheeeccCCcc
Confidence            444445555554432211 12334445555556665555433333455556666666655554

>PRK15386 type III secretion protein GogB; Provisional

Probab=97.76  E-value=8.1e-05  Score=81.26  Aligned_cols=77  Identities=16%  Similarity=0.236  Sum_probs=54.1

Q ss_pred             ccCCCCCCEEEccCccccCCCchhhcCCCCCCEEECcCCcccccCchhhhhcCcCCcEEEccCCcccccCCcccCCCCCC
Q 036375          686 LGQLTRLQSLHLNNNKLTGNLPSSFQNLTSLETLDLGNNRFSGNIPSLLGNGFVGLRILSLRSNAFSGEIPSKLSNLSSL  765 (1009)
Q Consensus       686 ~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~ip~~l~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L  765 (1009)
                      +..+.+++.|++++|.++ .+|.   -..+|++|.++++.-...+|..+   .++|+.|++++|.....+|.      +|
T Consensus        48 ~~~~~~l~~L~Is~c~L~-sLP~---LP~sLtsL~Lsnc~nLtsLP~~L---P~nLe~L~Ls~Cs~L~sLP~------sL  114 (426)
T PRK15386         48 IEEARASGRLYIKDCDIE-SLPV---LPNELTEITIENCNNLTTLPGSI---PEGLEKLTVCHCPEISGLPE------SV  114 (426)
T ss_pred             HHHhcCCCEEEeCCCCCc-ccCC---CCCCCcEEEccCCCCcccCCchh---hhhhhheEccCccccccccc------cc
Confidence            445788999999999887 4562   23469999998855445777654   46899999998833334554      47


Q ss_pred             CEEEccCCcC
Q 036375          766 QVLDLAENNL  775 (1009)
Q Consensus       766 ~~L~Ls~N~l  775 (1009)
                      +.|+++++..
T Consensus       115 e~L~L~~n~~  124 (426)
T PRK15386        115 RSLEIKGSAT  124 (426)
T ss_pred             ceEEeCCCCC
Confidence            7777776654

>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]

Probab=97.65  E-value=4.9e-06  Score=82.64  Aligned_cols=19  Identities=21%  Similarity=0.366  Sum_probs=13.8

Q ss_pred             hhhhcCCCCcEEEccCCcC
Q 036375          241 NWLVNISTLVYVDLSDCDL  259 (1009)
Q Consensus       241 ~~l~~l~~L~~L~L~~n~~  259 (1009)
                      +.+++-+.|++|.+++|.+
T Consensus       114 d~is~~t~l~HL~l~NnGl  132 (388)
T COG5238         114 DLISSSTDLVHLKLNNNGL  132 (388)
T ss_pred             HHHhcCCCceeEEeecCCC
Confidence            3556677888888888865

>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]

Probab=97.65  E-value=4e-06  Score=83.28  Aligned_cols=242  Identities=20%  Similarity=0.199  Sum_probs=142.6

Q ss_pred             ccCCCccEEEccCCcccCCCCchhhhccC---cccEEEecccccccc----CCCCCCCCCcCeEeccCCCCCCCCCCCCC
Q 036375          521 KTQQGVSFLDFSNASISGPIPNWFWDISS---KLSLLNVSLNQLQGQ----LPNPLNIAPFADVDFRSNLLEGPIPLPIV  593 (1009)
Q Consensus       521 ~~~~~L~~L~ls~n~i~~~~p~~~~~~~~---~L~~L~ls~n~l~~~----~~~~~~~~~l~~l~l~~n~l~~~~~~~~~  593 (1009)
                      ..+..++.+|+|+|.|......++.....   +|+..+++.- ++|.    ++..+..             --..-..|+
T Consensus        27 ~~~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~-ftgr~kde~~~~L~~-------------Ll~aLlkcp   92 (388)
T COG5238          27 EMMDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDA-FTGRDKDELYSNLVM-------------LLKALLKCP   92 (388)
T ss_pred             HhhcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhh-hhcccHHHHHHHHHH-------------HHHHHhcCC
Confidence            33566778888888887766666655443   3444443322 1111    1110000             000001246


Q ss_pred             CccEEEccCCcCCCcCCch---hhcCCCCccEEEccCCcccccCCccc-------------ccCCCCCeEEccCCcCCcc
Q 036375          594 EIELLDLSNNHFSGPIPQN---ISGSMPNLIFLSVSGNRLTGKIPGSI-------------GEMQLLQVIDLSRNSISGS  657 (1009)
Q Consensus       594 ~L~~L~Ls~n~l~~~ip~~---~~~~l~~L~~L~Ls~n~l~~~~~~~~-------------~~l~~L~~L~Ls~N~l~~~  657 (1009)
                      .|+..+||.|.|....|+.   +...-+.|++|.+++|.+.......+             ..-+.|++.+...|++..-
T Consensus        93 ~l~~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrNRleng  172 (388)
T COG5238          93 RLQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNRLENG  172 (388)
T ss_pred             cceeeeccccccCcccchHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEeccchhccC
Confidence            7777788888777666543   34556778888888887653322222             2346788888888887522


Q ss_pred             Cc----CcccCCCCCCEEECCCCcCcccC-----CccccCCCCCCEEEccCccccCC----CchhhcCCCCCCEEECcCC
Q 036375          658 IS----SSIGNCTFLKVLDLSYSSLSGVI-----PASLGQLTRLQSLHLNNNKLTGN----LPSSFQNLTSLETLDLGNN  724 (1009)
Q Consensus       658 ~p----~~l~~l~~L~~L~Ls~N~l~~~~-----p~~~~~l~~L~~L~L~~N~l~~~----~p~~~~~l~~L~~L~L~~N  724 (1009)
                      ..    ..+..-..|+.+.+..|.|.-.-     -..+..+.+|+.|||+.|-++..    +...+...+.|+.|.+.+|
T Consensus       173 s~~~~a~~l~sh~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~~lrEL~lnDC  252 (388)
T COG5238         173 SKELSAALLESHENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWNLLRELRLNDC  252 (388)
T ss_pred             cHHHHHHHHHhhcCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcccchhhhccccch
Confidence            11    12333357888888888775221     11234578889999999888733    2234556677888889888


Q ss_pred             cccccCchhhhh-----cCcCCcEEEccCCcccccCCccc-------CCCCCCCEEEccCCcCC
Q 036375          725 RFSGNIPSLLGN-----GFVGLRILSLRSNAFSGEIPSKL-------SNLSSLQVLDLAENNLT  776 (1009)
Q Consensus       725 ~l~~~ip~~l~~-----~l~~L~~L~L~~N~l~~~~p~~l-------~~l~~L~~L~Ls~N~l~  776 (1009)
                      -++..-...+..     ..++|..|-..+|...+.+-..+       .+++-|..|.+.+|+|.
T Consensus       253 lls~~G~~~v~~~f~e~~~p~l~~L~~~Yne~~~~~i~~~~l~~~e~~~~p~L~~le~ngNr~~  316 (388)
T COG5238         253 LLSNEGVKSVLRRFNEKFVPNLMPLPGDYNERRGGIILDISLNEFEQDAVPLLVDLERNGNRIK  316 (388)
T ss_pred             hhccccHHHHHHHhhhhcCCCccccccchhhhcCceeeeechhhhhhcccHHHHHHHHccCcch
Confidence            887554443322     25678888888887765432221       34566667777777765

>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]

Probab=97.61  E-value=0.00012  Score=70.25  Aligned_cols=112  Identities=23%  Similarity=0.235  Sum_probs=78.4

Q ss_pred             CCCCCEEeCcCCcccccCCCCCCCCCCCcEEeCCCCcCCCCCCcccCCCCCCCEEEccCcccccccchhhhccCCCCcEE
Q 036375          402 LENLVELTLSYNLLQGPIPASLGNLKNLTKLNLPGNQLNGTLPETLGSLPELSVLDVSSNSLTGIISEIHFSRLSKLKFL  481 (1009)
Q Consensus       402 l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L  481 (1009)
                      ..+...+||++|.+...  ..|..++.|.+|.+.+|+|+..-|.--.-+++|+.|.+.+|.+.....-..+..|++|++|
T Consensus        41 ~d~~d~iDLtdNdl~~l--~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~L  118 (233)
T KOG1644|consen   41 LDQFDAIDLTDNDLRKL--DNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYL  118 (233)
T ss_pred             ccccceecccccchhhc--ccCCCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcchhccCCcccee
Confidence            34667888888887633  3577788888899999988876666555678889999999888765554557788888888


Q ss_pred             eCCCCcccccCCCCCCCCccccEEecccCcCCCCCCcccccCCCccEEEccCCcc
Q 036375          482 GLSSNSFILNVSSSWIPPFQVQSLNMRSCQLGPSFPSWLKTQQGVSFLDFSNASI  536 (1009)
Q Consensus       482 ~L~~n~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~ls~n~i  536 (1009)
                      .+-+|+......                     .--..+..+++|+.||+.+-..
T Consensus       119 tll~Npv~~k~~---------------------YR~yvl~klp~l~~LDF~kVt~  152 (233)
T KOG1644|consen  119 TLLGNPVEHKKN---------------------YRLYVLYKLPSLRTLDFQKVTR  152 (233)
T ss_pred             eecCCchhcccC---------------------ceeEEEEecCcceEeehhhhhH
Confidence            888887642211                     1112345667777777766543

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=97.61  E-value=3e-05  Score=56.04  Aligned_cols=35  Identities=43%  Similarity=0.642  Sum_probs=14.7

Q ss_pred             CCeEEccCCcccccCCCCccCCCCCCEEeCCCCcCC
Q 036375          852 LVVLNLSRNHIGGQIPENISGLHQLASLDLSSNNLS  887 (1009)
Q Consensus       852 L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~  887 (1009)
                      |++|++++|+|+. +|..+++|++|+.|++++|+++
T Consensus         3 L~~L~l~~N~i~~-l~~~l~~l~~L~~L~l~~N~i~   37 (44)
T PF12799_consen    3 LEELDLSNNQITD-LPPELSNLPNLETLNLSNNPIS   37 (44)
T ss_dssp             -SEEEETSSS-SS-HGGHGTTCTTSSEEEETSSCCS
T ss_pred             ceEEEccCCCCcc-cCchHhCCCCCCEEEecCCCCC
Confidence            4444444444442 2223444444444444444444

...

>PRK15386 type III secretion protein GogB; Provisional

Probab=97.57  E-value=0.00024  Score=77.63  Aligned_cols=54  Identities=15%  Similarity=0.051  Sum_probs=27.8

Q ss_pred             CCCccEEEccCCcccccCCcccccCCCCCeEEccCCcCCccCcCcccCCCCCCEEECCCC
Q 036375          617 MPNLIFLSVSGNRLTGKIPGSIGEMQLLQVIDLSRNSISGSISSSIGNCTFLKVLDLSYS  676 (1009)
Q Consensus       617 l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N  676 (1009)
                      +.+++.|++++|.++.. |. +  ..+|+.|.++++.--..+|..+  .++|++|++++|
T Consensus        51 ~~~l~~L~Is~c~L~sL-P~-L--P~sLtsL~Lsnc~nLtsLP~~L--P~nLe~L~Ls~C  104 (426)
T PRK15386         51 ARASGRLYIKDCDIESL-PV-L--PNELTEITIENCNNLTTLPGSI--PEGLEKLTVCHC  104 (426)
T ss_pred             hcCCCEEEeCCCCCccc-CC-C--CCCCcEEEccCCCCcccCCchh--hhhhhheEccCc
Confidence            46666777776655532 21 1  2346666666543323444333  235666666655

>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A

Probab=97.52  E-value=0.00019  Score=67.21  Aligned_cols=126  Identities=17%  Similarity=0.248  Sum_probs=50.9

Q ss_pred             CCchhhcCCCCccEEEccCCcccccCCcccccCCCCCeEEccCCcCCccCcCcccCCCCCCEEECCCCcCcccCCccccC
Q 036375          609 IPQNISGSMPNLIFLSVSGNRLTGKIPGSIGEMQLLQVIDLSRNSISGSISSSIGNCTFLKVLDLSYSSLSGVIPASLGQ  688 (1009)
Q Consensus       609 ip~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~  688 (1009)
                      +++..|..+++|+.+.+.. .+..+...+|.++++|+.+.+.++ +.......|.++++++.+.+.+ .+.......|..
T Consensus         3 i~~~~F~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~   79 (129)
T PF13306_consen    3 IGNNAFYNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSN   79 (129)
T ss_dssp             E-TTTTTT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT
T ss_pred             ECHHHHhCCCCCCEEEECC-CeeEeChhhccccccccccccccc-ccccceeeeecccccccccccc-cccccccccccc
Confidence            3444555566666666653 344455555666666666666553 4444445566665666666654 333334445555


Q ss_pred             CCCCCEEEccCccccCCCchhhcCCCCCCEEECcCCcccccCchhhhhcCcCC
Q 036375          689 LTRLQSLHLNNNKLTGNLPSSFQNLTSLETLDLGNNRFSGNIPSLLGNGFVGL  741 (1009)
Q Consensus       689 l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~ip~~l~~~l~~L  741 (1009)
                      +++|+.+++..+ +.......|.++ .|+.+.+.. .+. .++...+.++++|
T Consensus        80 ~~~l~~i~~~~~-~~~i~~~~f~~~-~l~~i~~~~-~~~-~i~~~~F~~~~~l  128 (129)
T PF13306_consen   80 CTNLKNIDIPSN-ITEIGSSSFSNC-NLKEINIPS-NIT-KIEENAFKNCTKL  128 (129)
T ss_dssp             -TTECEEEETTT--BEEHTTTTTT--T--EEE-TT-B-S-S----GGG-----
T ss_pred             cccccccccCcc-ccEEchhhhcCC-CceEEEECC-Ccc-EECCccccccccC
Confidence            666666666543 333333445554 566665554 222 3444444334333

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=97.49  E-value=9.5e-05  Score=53.45  Aligned_cols=36  Identities=50%  Similarity=0.795  Sum_probs=14.8

Q ss_pred             CCCEEEccCccccCCCchhhcCCCCCCEEECcCCccc
Q 036375          691 RLQSLHLNNNKLTGNLPSSFQNLTSLETLDLGNNRFS  727 (1009)
Q Consensus       691 ~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~  727 (1009)
                      +|++|++++|+++ .+|..+.++++|++|++++|+++
T Consensus         2 ~L~~L~l~~N~i~-~l~~~l~~l~~L~~L~l~~N~i~   37 (44)
T PF12799_consen    2 NLEELDLSNNQIT-DLPPELSNLPNLETLNLSNNPIS   37 (44)
T ss_dssp             T-SEEEETSSS-S-SHGGHGTTCTTSSEEEETSSCCS
T ss_pred             cceEEEccCCCCc-ccCchHhCCCCCCEEEecCCCCC
Confidence            3444444444444 23333444444444444444443

...

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=97.32  E-value=8.5e-05  Score=88.42  Aligned_cols=130  Identities=15%  Similarity=0.188  Sum_probs=58.4

Q ss_pred             hhhhh-cCCCCccEEEcCCCcCCCCCCCCCCCCCCCCcEEECCCCCCCCCchhhhhcCCCCcEEEccCCcCcc-cCCccc
Q 036375          190 WLGIL-KNLPNLTELHLSVCGLTGSITSITPVNLTSPAVLDLSLNHFNSLFPNWLVNISTLVYVDLSDCDLYG-RIPIGF  267 (1009)
Q Consensus       190 ~~~~l-~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~L~~n~~~~-~~p~~l  267 (1009)
                      |+..+ ..+|+|+.|.+++-.+...--.....++++|..||+|+++++..  ..++++++|+.|.+.+-.+.. ..-..+
T Consensus       139 W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl--~GIS~LknLq~L~mrnLe~e~~~~l~~L  216 (699)
T KOG3665|consen  139 WPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL--SGISRLKNLQVLSMRNLEFESYQDLIDL  216 (699)
T ss_pred             HHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc--HHHhccccHHHHhccCCCCCchhhHHHH
Confidence            55555 33566666666554443221111123444444444444444433  334455555555444443332 111234


Q ss_pred             CCCCCCCEEEcCCCCCCCCcccccccCCCCCccEEEcccccccccCCccccCCCCCCEEEccCCcccccCchhh
Q 036375          268 GELPNLQYLSLAGNNNLSGSCSQLFRGSWKKIQILNFASNKLHGKLPSSVANMTSLTNFDLFDKKVEGGIPSSI  341 (1009)
Q Consensus       268 ~~l~~L~~L~L~~n~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~~~~~~~~~l  341 (1009)
                      .++++|+.||+|.........                    +....-+.-..+|+|+.||.++..+.+.+-+.+
T Consensus       217 F~L~~L~vLDIS~~~~~~~~~--------------------ii~qYlec~~~LpeLrfLDcSgTdi~~~~le~l  270 (699)
T KOG3665|consen  217 FNLKKLRVLDISRDKNNDDTK--------------------IIEQYLECGMVLPELRFLDCSGTDINEEILEEL  270 (699)
T ss_pred             hcccCCCeeeccccccccchH--------------------HHHHHHHhcccCccccEEecCCcchhHHHHHHH
Confidence            445555555555432111000                    000011122347888888888887776654443

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=97.26  E-value=0.0001  Score=87.84  Aligned_cols=142  Identities=23%  Similarity=0.204  Sum_probs=91.2

Q ss_pred             CCccEEEcCCCc-CCCCCCCCCCCCCCCCcEEECCCCCCCC-CchhhhhcCCCCcEEEccCCcCcccCCcccCCCCCCCE
Q 036375          198 PNLTELHLSVCG-LTGSITSITPVNLTSPAVLDLSLNHFNS-LFPNWLVNISTLVYVDLSDCDLYGRIPIGFGELPNLQY  275 (1009)
Q Consensus       198 ~~L~~L~L~~n~-l~~~~~~~~~~~l~~L~~L~L~~n~~~~-~~p~~l~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~  275 (1009)
                      .+|++|++++.. +....+......+|+|+.|.+++-.+.. .+-....++++|..||+|+++++..  .+++++++|+.
T Consensus       122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl--~GIS~LknLq~  199 (699)
T KOG3665|consen  122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL--SGISRLKNLQV  199 (699)
T ss_pred             HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc--HHHhccccHHH
Confidence            578888988864 3334444444668888888888866543 3344456788888888888887644  46778888888


Q ss_pred             EEcCCCCCCCCcccccccCCCCCccEEEcccccccccCCccccCCCCCCEEEccCCcccccC------chhhhcccCCCE
Q 036375          276 LSLAGNNNLSGSCSQLFRGSWKKIQILNFASNKLHGKLPSSVANMTSLTNFDLFDKKVEGGI------PSSIARLCYLKE  349 (1009)
Q Consensus       276 L~L~~n~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~~~~~~------~~~l~~l~~L~~  349 (1009)
                      |.+.+-.+...                         ..-..+.++++|++||+|........      .+.-..+|+|+.
T Consensus       200 L~mrnLe~e~~-------------------------~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrf  254 (699)
T KOG3665|consen  200 LSMRNLEFESY-------------------------QDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRF  254 (699)
T ss_pred             HhccCCCCCch-------------------------hhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccE
Confidence            87765432100                         11123556777777777765543221      111234789999


Q ss_pred             EEcCCCcCCCCCCcccc
Q 036375          350 FDLSGNNLTGSLPEILQ  366 (1009)
Q Consensus       350 L~l~~n~l~~~~~~~~~  366 (1009)
                      ||.++..+.+..-+.+.
T Consensus       255 LDcSgTdi~~~~le~ll  271 (699)
T KOG3665|consen  255 LDCSGTDINEEILEELL  271 (699)
T ss_pred             EecCCcchhHHHHHHHH
Confidence            99999988766555443

>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A

Probab=97.20  E-value=0.00065  Score=63.46  Aligned_cols=108  Identities=21%  Similarity=0.311  Sum_probs=52.0

Q ss_pred             CcccccCCCCCeEEccCCcCCccCcCcccCCCCCCEEECCCCcCcccCCccccCCCCCCEEEccCccccCCCchhhcCCC
Q 036375          635 PGSIGEMQLLQVIDLSRNSISGSISSSIGNCTFLKVLDLSYSSLSGVIPASLGQLTRLQSLHLNNNKLTGNLPSSFQNLT  714 (1009)
Q Consensus       635 ~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~  714 (1009)
                      ..+|.++++|+.+.+.. .+.......|.++++|+.+++..+ +.......|.++++++.+.+.+ .+.......|..++
T Consensus         5 ~~~F~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~   81 (129)
T PF13306_consen    5 NNAFYNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCT   81 (129)
T ss_dssp             TTTTTT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-T
T ss_pred             HHHHhCCCCCCEEEECC-CeeEeChhhccccccccccccccc-ccccceeeeecccccccccccc-cccccccccccccc
Confidence            34566677777777764 455555566777767777777664 5545555666666677777754 33323344566666


Q ss_pred             CCCEEECcCCcccccCchhhhhcCcCCcEEEccC
Q 036375          715 SLETLDLGNNRFSGNIPSLLGNGFVGLRILSLRS  748 (1009)
Q Consensus       715 ~L~~L~L~~N~l~~~ip~~l~~~l~~L~~L~L~~  748 (1009)
                      +|+.+++..+ +. .++...+.+. +|+.+.+..
T Consensus        82 ~l~~i~~~~~-~~-~i~~~~f~~~-~l~~i~~~~  112 (129)
T PF13306_consen   82 NLKNIDIPSN-IT-EIGSSSFSNC-NLKEINIPS  112 (129)
T ss_dssp             TECEEEETTT--B-EEHTTTTTT--T--EEE-TT
T ss_pred             cccccccCcc-cc-EEchhhhcCC-CceEEEECC
Confidence            6666666554 33 4444444333 555555544

>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=97.18  E-value=0.00025  Score=71.26  Aligned_cols=112  Identities=19%  Similarity=0.138  Sum_probs=73.7

Q ss_pred             CCCcCCEEeCCCCCCCCCCCCcccCCCCCCceeecccC--CCCccCCCCCCCCCCCCeeeCCCccccccCCCcccccCCC
Q 036375           94 SGSLLEYLDLSFNTFNDIPIPEFLGSLENLQYLNLSEA--GFTGVVPSSLGNLHRLQYFDVSAELFALSADSLDWLTGLV  171 (1009)
Q Consensus        94 ~l~~L~~LdLs~~~~~~~~lp~~i~~l~~L~~L~Ls~~--~~~~~lp~~l~~L~~L~~L~Ls~~~~~~~~~~~~~l~~l~  171 (1009)
                      .+..|+.|++.+..++.   -..+-.+++|++|.+|.|  .+.+.++....++++|++|++++|+++. ...+..+..+.
T Consensus        41 ~~~~le~ls~~n~gltt---~~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~-lstl~pl~~l~  116 (260)
T KOG2739|consen   41 EFVELELLSVINVGLTT---LTNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKD-LSTLRPLKELE  116 (260)
T ss_pred             cccchhhhhhhccceee---cccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCcccc-ccccchhhhhc
Confidence            34445555555555443   123445778888888888  6666666666677888888888887664 56666777777


Q ss_pred             CCCeEEcCCccCCCCcchhhhhhcCCCCccEEEcCCCc
Q 036375          172 SLKHLAMNRVDLSLVGSEWLGILKNLPNLTELHLSVCG  209 (1009)
Q Consensus       172 ~L~~L~l~~~~l~~~~~~~~~~l~~l~~L~~L~L~~n~  209 (1009)
                      +|..|++.++.......---..+.-+++|++|+-....
T Consensus       117 nL~~Ldl~n~~~~~l~dyre~vf~ll~~L~~LD~~dv~  154 (260)
T KOG2739|consen  117 NLKSLDLFNCSVTNLDDYREKVFLLLPSLKYLDGCDVD  154 (260)
T ss_pred             chhhhhcccCCccccccHHHHHHHHhhhhccccccccC
Confidence            78888887777666433223455667777777755543

>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]

Probab=97.06  E-value=0.00069  Score=65.12  Aligned_cols=109  Identities=21%  Similarity=0.192  Sum_probs=66.1

Q ss_pred             CcCCEEeCCCCCCCCCCCCcccCCCCCCceeecccCCCCccCCCCCCCCCCCCeeeCCCccccccCCCcccccCCCCCCe
Q 036375           96 SLLEYLDLSFNTFNDIPIPEFLGSLENLQYLNLSEAGFTGVVPSSLGNLHRLQYFDVSAELFALSADSLDWLTGLVSLKH  175 (1009)
Q Consensus        96 ~~L~~LdLs~~~~~~~~lp~~i~~l~~L~~L~Ls~~~~~~~lp~~l~~L~~L~~L~Ls~~~~~~~~~~~~~l~~l~~L~~  175 (1009)
                      .....+||++|.+..   ...+..++.|.+|.|++|.++..-|.--..+++|++|.+.+|.+... +++..+..|++|+.
T Consensus        42 d~~d~iDLtdNdl~~---l~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l-~dl~pLa~~p~L~~  117 (233)
T KOG1644|consen   42 DQFDAIDLTDNDLRK---LDNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQEL-GDLDPLASCPKLEY  117 (233)
T ss_pred             cccceecccccchhh---cccCCCccccceEEecCCcceeeccchhhhccccceEEecCcchhhh-hhcchhccCCccce
Confidence            346678888888765   23456778888888888888855554444566788888888865432 34455555666666


Q ss_pred             EEcCCccCCCCcchhhhhhcCCCCccEEEcCCC
Q 036375          176 LAMNRVDLSLVGSEWLGILKNLPNLTELHLSVC  208 (1009)
Q Consensus       176 L~l~~~~l~~~~~~~~~~l~~l~~L~~L~L~~n  208 (1009)
                      |.+-+|+++....=-.-.+..+|+|+.||..+.
T Consensus       118 Ltll~Npv~~k~~YR~yvl~klp~l~~LDF~kV  150 (233)
T KOG1644|consen  118 LTLLGNPVEHKKNYRLYVLYKLPSLRTLDFQKV  150 (233)
T ss_pred             eeecCCchhcccCceeEEEEecCcceEeehhhh
Confidence            666666554422101112344555555555443

>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]

Probab=96.61  E-value=0.0004  Score=81.74  Aligned_cols=16  Identities=38%  Similarity=0.476  Sum_probs=9.2

Q ss_pred             hcCCCCCCEEeCcCCc
Q 036375          399 LSQLENLVELTLSYNL  414 (1009)
Q Consensus       399 l~~l~~L~~L~Ls~n~  414 (1009)
                      ...+++++.+.+..+.
T Consensus       358 ~~~~~~l~~~~l~~~~  373 (482)
T KOG1947|consen  358 LRSCPKLTDLSLSYCG  373 (482)
T ss_pred             HhcCCCcchhhhhhhh
Confidence            4455666666665555

>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]

Probab=96.60  E-value=0.00035  Score=82.21  Aligned_cols=63  Identities=22%  Similarity=0.268  Sum_probs=27.8

Q ss_pred             CCCCcEEEccCCc-CcccCCcccC-CCCCCCEEEcCCCCCCCCcccccccCCCCCccEEEccccc
Q 036375          246 ISTLVYVDLSDCD-LYGRIPIGFG-ELPNLQYLSLAGNNNLSGSCSQLFRGSWKKIQILNFASNK  308 (1009)
Q Consensus       246 l~~L~~L~L~~n~-~~~~~p~~l~-~l~~L~~L~L~~n~~~~~~~~~~~~~~~~~L~~L~l~~n~  308 (1009)
                      +++|+.|+++.+. +++..-..+. .+++|++|.+.+|.......+......++.|++|+++.|.
T Consensus       242 ~~~L~~l~l~~~~~isd~~l~~l~~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~  306 (482)
T KOG1947|consen  242 CRKLKSLDLSGCGLVTDIGLSALASRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCH  306 (482)
T ss_pred             cCCcCccchhhhhccCchhHHHHHhhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCc
Confidence            4455555555554 3222212222 2455555554444322333333344445555555555554

>KOG2123 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.26  E-value=0.00019  Score=71.93  Aligned_cols=98  Identities=31%  Similarity=0.373  Sum_probs=48.8

Q ss_pred             CccEEEccCCcccccCCcccccCCCCCeEEccCCcCCccCcCcccCCCCCCEEECCCCcCcccCC-ccccCCCCCCEEEc
Q 036375          619 NLIFLSVSGNRLTGKIPGSIGEMQLLQVIDLSRNSISGSISSSIGNCTFLKVLDLSYSSLSGVIP-ASLGQLTRLQSLHL  697 (1009)
Q Consensus       619 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p-~~~~~l~~L~~L~L  697 (1009)
                      +.+.|+..+|.++++.  ...+++.|++|.|+-|+|+..-  .+..|++|++|+|..|.|..... ..+.++++|+.|.|
T Consensus        20 ~vkKLNcwg~~L~DIs--ic~kMp~lEVLsLSvNkIssL~--pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~LWL   95 (388)
T KOG2123|consen   20 NVKKLNCWGCGLDDIS--ICEKMPLLEVLSLSVNKISSLA--PLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTLWL   95 (388)
T ss_pred             HhhhhcccCCCccHHH--HHHhcccceeEEeeccccccch--hHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhHhh
Confidence            3444444444444321  1223555566666666655432  25556666666666666553211 23445566666666


Q ss_pred             cCccccCCCchh-----hcCCCCCCEEE
Q 036375          698 NNNKLTGNLPSS-----FQNLTSLETLD  720 (1009)
Q Consensus       698 ~~N~l~~~~p~~-----~~~l~~L~~L~  720 (1009)
                      ..|.-.|..+..     +.-+++|+.||
T Consensus        96 ~ENPCc~~ag~nYR~~VLR~LPnLkKLD  123 (388)
T KOG2123|consen   96 DENPCCGEAGQNYRRKVLRVLPNLKKLD  123 (388)
T ss_pred             ccCCcccccchhHHHHHHHHcccchhcc
Confidence            666655444332     34455555543

>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=96.20  E-value=0.0036  Score=63.11  Aligned_cols=82  Identities=24%  Similarity=0.326  Sum_probs=37.3

Q ss_pred             CCCCeEEccCCcCCccCcCcccCCCCCCEEECCCC--cCcccCCccccCCCCCCEEEccCccccCCCchh---hcCCCCC
Q 036375          642 QLLQVIDLSRNSISGSISSSIGNCTFLKVLDLSYS--SLSGVIPASLGQLTRLQSLHLNNNKLTGNLPSS---FQNLTSL  716 (1009)
Q Consensus       642 ~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N--~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~---~~~l~~L  716 (1009)
                      ..|+.|.+.+..++..  ..+-.+++|+.|.++.|  ++.+..+.....+++|++|++++|++.-  +..   +..+.+|
T Consensus        43 ~~le~ls~~n~gltt~--~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~--lstl~pl~~l~nL  118 (260)
T KOG2739|consen   43 VELELLSVINVGLTTL--TNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKD--LSTLRPLKELENL  118 (260)
T ss_pred             cchhhhhhhccceeec--ccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCcccc--ccccchhhhhcch
Confidence            3444444444444322  22334455555555555  4444433333444555566665555541  111   2333444


Q ss_pred             CEEECcCCccc
Q 036375          717 ETLDLGNNRFS  727 (1009)
Q Consensus       717 ~~L~L~~N~l~  727 (1009)
                      ..|++.+|.-+
T Consensus       119 ~~Ldl~n~~~~  129 (260)
T KOG2739|consen  119 KSLDLFNCSVT  129 (260)
T ss_pred             hhhhcccCCcc
Confidence            45555555433

>KOG2123 consensus Uncharacterized conserved protein [Function unknown]

Probab=95.46  E-value=0.00081  Score=67.60  Aligned_cols=101  Identities=26%  Similarity=0.269  Sum_probs=73.5

Q ss_pred             CCCCCeEEccCCcCCccCcCcccCCCCCCEEECCCCcCcccCCccccCCCCCCEEEccCccccCCCc-hhhcCCCCCCEE
Q 036375          641 MQLLQVIDLSRNSISGSISSSIGNCTFLKVLDLSYSSLSGVIPASLGQLTRLQSLHLNNNKLTGNLP-SSFQNLTSLETL  719 (1009)
Q Consensus       641 l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p-~~~~~l~~L~~L  719 (1009)
                      +.+.+.|+..++.++++  .....++.|+.|.|+-|+|+..  +.|..|++|++|+|..|.|..... .-+.++++|++|
T Consensus        18 l~~vkKLNcwg~~L~DI--sic~kMp~lEVLsLSvNkIssL--~pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~L   93 (388)
T KOG2123|consen   18 LENVKKLNCWGCGLDDI--SICEKMPLLEVLSLSVNKISSL--APLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTL   93 (388)
T ss_pred             HHHhhhhcccCCCccHH--HHHHhcccceeEEeeccccccc--hhHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhH
Confidence            45677888888888755  3456788999999999999866  347788999999999998874321 235778888888


Q ss_pred             ECcCCcccccCchhh----hhcCcCCcEEE
Q 036375          720 DLGNNRFSGNIPSLL----GNGFVGLRILS  745 (1009)
Q Consensus       720 ~L~~N~l~~~ip~~l----~~~l~~L~~L~  745 (1009)
                      .|..|+-.|.-+...    ...+++|+.||
T Consensus        94 WL~ENPCc~~ag~nYR~~VLR~LPnLkKLD  123 (388)
T KOG2123|consen   94 WLDENPCCGEAGQNYRRKVLRVLPNLKKLD  123 (388)
T ss_pred             hhccCCcccccchhHHHHHHHHcccchhcc
Confidence            888888777665432    12366666664

>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=95.13  E-value=0.0065  Score=36.41  Aligned_cols=12  Identities=42%  Similarity=0.531  Sum_probs=5.6

Q ss_pred             CCeEEccCCccc
Q 036375          852 LVVLNLSRNHIG  863 (1009)
Q Consensus       852 L~~L~Ls~N~l~  863 (1009)
                      |++|||++|+|+
T Consensus         2 L~~Ldls~n~l~   13 (22)
T PF00560_consen    2 LEYLDLSGNNLT   13 (22)
T ss_dssp             ESEEEETSSEES
T ss_pred             ccEEECCCCcCE
Confidence            344444444444

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....

>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=95.04  E-value=0.01  Score=35.56  Aligned_cols=20  Identities=65%  Similarity=0.866  Sum_probs=11.0

Q ss_pred             CCEEeCCCCcCCCCCcccccC
Q 036375          876 LASLDLSSNNLSGGIPSSLSS  896 (1009)
Q Consensus       876 L~~L~Ls~N~l~~~ip~~l~~  896 (1009)
                      |++|||++|+++ .+|..|++
T Consensus         2 L~~Ldls~n~l~-~ip~~~~~   21 (22)
T PF00560_consen    2 LEYLDLSGNNLT-SIPSSFSN   21 (22)
T ss_dssp             ESEEEETSSEES-EEGTTTTT
T ss_pred             ccEEECCCCcCE-eCChhhcC
Confidence            555666666665 45555443

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....

>KOG4308 consensus LRR-containing protein [Function unknown]

Probab=91.68  E-value=0.0017  Score=74.05  Aligned_cols=109  Identities=26%  Similarity=0.271  Sum_probs=55.6

Q ss_pred             CCCEEECCCCcCcccCCc----cccCCCCCCEEEccCccccCCCchh----hcCC-CCCCEEECcCCccccc----Cchh
Q 036375          667 FLKVLDLSYSSLSGVIPA----SLGQLTRLQSLHLNNNKLTGNLPSS----FQNL-TSLETLDLGNNRFSGN----IPSL  733 (1009)
Q Consensus       667 ~L~~L~Ls~N~l~~~~p~----~~~~l~~L~~L~L~~N~l~~~~p~~----~~~l-~~L~~L~L~~N~l~~~----ip~~  733 (1009)
                      .+..|.|.+|.+......    .+...+.|+.|++++|.+.+.-...    +... ..+++|++..|.+++.    +...
T Consensus        88 ~l~~L~L~~~~l~~~~~~~l~~~l~t~~~L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g~~~l~~~  167 (478)
T KOG4308|consen   88 SLLHLSLANNRLGDRGAEELAQALKTLPTLGQLDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSCSLTSEGAAPLAAV  167 (478)
T ss_pred             hHHHhhhhhCccccchHHHHHHHhcccccHhHhhcccCCCccHhHHHHHhhcccchHHHHHHHhhcccccccchHHHHHH
Confidence            467777777777654332    3444567777777777766322111    2222 3455566666665532    2233


Q ss_pred             hhhcCcCCcEEEccCCcccc----cCCcccC----CCCCCCEEEccCCcCC
Q 036375          734 LGNGFVGLRILSLRSNAFSG----EIPSKLS----NLSSLQVLDLAENNLT  776 (1009)
Q Consensus       734 l~~~l~~L~~L~L~~N~l~~----~~p~~l~----~l~~L~~L~Ls~N~l~  776 (1009)
                      +.. ...++.++++.|.+..    .++..+.    ...++++|.+++|.++
T Consensus       168 L~~-~~~l~~l~l~~n~l~~~g~~~l~~~l~~~~~~~~~le~L~L~~~~~t  217 (478)
T KOG4308|consen  168 LEK-NEHLTELDLSLNGLIELGLLVLSQALESAASPLSSLETLKLSRCGVT  217 (478)
T ss_pred             Hhc-ccchhHHHHHhcccchhhhHHHhhhhhhhhcccccHHHHhhhhcCcC
Confidence            333 4555666666665531    1122222    3455556666666554

>KOG4308 consensus LRR-containing protein [Function unknown]

Probab=90.73  E-value=0.0021  Score=73.40  Aligned_cols=183  Identities=26%  Similarity=0.321  Sum_probs=103.3

Q ss_pred             ccEEEccCCcCCCcCCchh---hcCCCCccEEEccCCcccccCCcc----cccC-CCCCeEEccCCcCCcc----CcCcc
Q 036375          595 IELLDLSNNHFSGPIPQNI---SGSMPNLIFLSVSGNRLTGKIPGS----IGEM-QLLQVIDLSRNSISGS----ISSSI  662 (1009)
Q Consensus       595 L~~L~Ls~n~l~~~ip~~~---~~~l~~L~~L~Ls~n~l~~~~~~~----~~~l-~~L~~L~Ls~N~l~~~----~p~~l  662 (1009)
                      +..+.+.+|.+.......+   ....+.|+.|++++|.+.+.....    +... ..+++|++..|.+++.    +...+
T Consensus        89 l~~L~L~~~~l~~~~~~~l~~~l~t~~~L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g~~~l~~~L  168 (478)
T KOG4308|consen   89 LLHLSLANNRLGDRGAEELAQALKTLPTLGQLDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSCSLTSEGAAPLAAVL  168 (478)
T ss_pred             HHHhhhhhCccccchHHHHHHHhcccccHhHhhcccCCCccHhHHHHHhhcccchHHHHHHHhhcccccccchHHHHHHH
Confidence            4555666665553322221   234456666777777666322211    1122 3456667776666533    33445


Q ss_pred             cCCCCCCEEECCCCcCccc----CCccc----cCCCCCCEEEccCccccCCC----chhhcCCCC-CCEEECcCCccccc
Q 036375          663 GNCTFLKVLDLSYSSLSGV----IPASL----GQLTRLQSLHLNNNKLTGNL----PSSFQNLTS-LETLDLGNNRFSGN  729 (1009)
Q Consensus       663 ~~l~~L~~L~Ls~N~l~~~----~p~~~----~~l~~L~~L~L~~N~l~~~~----p~~~~~l~~-L~~L~L~~N~l~~~  729 (1009)
                      .....++.++++.|.+...    ++..+    ....++++|++.+|.++...    ...+...+. +..+++.+|.+.+.
T Consensus       169 ~~~~~l~~l~l~~n~l~~~g~~~l~~~l~~~~~~~~~le~L~L~~~~~t~~~c~~l~~~l~~~~~~~~el~l~~n~l~d~  248 (478)
T KOG4308|consen  169 EKNEHLTELDLSLNGLIELGLLVLSQALESAASPLSSLETLKLSRCGVTSSSCALLDEVLASGESLLRELDLASNKLGDV  248 (478)
T ss_pred             hcccchhHHHHHhcccchhhhHHHhhhhhhhhcccccHHHHhhhhcCcChHHHHHHHHHHhccchhhHHHHHHhcCcchH
Confidence            5567777777777776311    22222    24567888888888776221    123444455 66788888877643


Q ss_pred             Cchhhhh---cC-cCCcEEEccCCcccccC----CcccCCCCCCCEEEccCCcCCC
Q 036375          730 IPSLLGN---GF-VGLRILSLRSNAFSGEI----PSKLSNLSSLQVLDLAENNLTG  777 (1009)
Q Consensus       730 ip~~l~~---~l-~~L~~L~L~~N~l~~~~----p~~l~~l~~L~~L~Ls~N~l~~  777 (1009)
                      .-..+..   .+ ..++.++++.|.++..-    ...+..++.++.+.++.|.+..
T Consensus       249 g~~~L~~~l~~~~~~l~~l~l~~nsi~~~~~~~L~~~l~~~~~l~~l~l~~n~l~~  304 (478)
T KOG4308|consen  249 GVEKLLPCLSVLSETLRVLDLSRNSITEKGVRDLAEVLVSCRQLEELSLSNNPLTD  304 (478)
T ss_pred             HHHHHHHHhcccchhhhhhhhhcCCccccchHHHHHHHhhhHHHHHhhcccCcccc
Confidence            2222211   12 45678888888887543    3345567788888888888763

>KOG3864 consensus Uncharacterized conserved protein [Function unknown]

Probab=89.16  E-value=0.048  Score=52.98  Aligned_cols=82  Identities=20%  Similarity=0.254  Sum_probs=37.3

Q ss_pred             CcEEEccCCcCcccCCcccCCCCCCCEEEcCCCCCCCCcccccccCCCCCccEEEccccc-ccccCCccccCCCCCCEEE
Q 036375          249 LVYVDLSDCDLYGRIPIGFGELPNLQYLSLAGNNNLSGSCSQLFRGSWKKIQILNFASNK-LHGKLPSSVANMTSLTNFD  327 (1009)
Q Consensus       249 L~~L~L~~n~~~~~~p~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~~~~~L~~L~l~~n~-l~~~~p~~l~~l~~L~~L~  327 (1009)
                      ++.+|-+++.+...--+.+..++.++.|.+.+|.....-++...-+-.++|+.|++++|. ++...-..+..+++|+.|.
T Consensus       103 IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L~  182 (221)
T KOG3864|consen  103 IEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLRRLH  182 (221)
T ss_pred             EEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhhHHHH
Confidence            444444444444333334444455555555544332222222222233444555554442 4433344555666666666


Q ss_pred             ccC
Q 036375          328 LFD  330 (1009)
Q Consensus       328 l~~  330 (1009)
                      +.+
T Consensus       183 l~~  185 (221)
T KOG3864|consen  183 LYD  185 (221)
T ss_pred             hcC
Confidence            654

>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D

Probab=86.86  E-value=0.37  Score=26.72  Aligned_cols=9  Identities=78%  Similarity=1.047  Sum_probs=2.9

Q ss_pred             CEEECcCCc
Q 036375          717 ETLDLGNNR  725 (1009)
Q Consensus       717 ~~L~L~~N~  725 (1009)
                      ++|++++|+
T Consensus         4 ~~L~l~~n~   12 (17)
T PF13504_consen    4 RTLDLSNNR   12 (17)
T ss_dssp             SEEEETSS-
T ss_pred             CEEECCCCC
Confidence            333333333

...

>smart00370 LRR Leucine-rich repeats, outliers

Probab=86.72  E-value=0.56  Score=29.31  Aligned_cols=16  Identities=50%  Similarity=0.536  Sum_probs=9.0

Q ss_pred             CCCCEEeCCCCcCCCC
Q 036375          874 HQLASLDLSSNNLSGG  889 (1009)
Q Consensus       874 ~~L~~L~Ls~N~l~~~  889 (1009)
                      ++|++|+|++|+|+..
T Consensus         2 ~~L~~L~L~~N~l~~l   17 (26)
T smart00370        2 PNLRELDLSNNQLSSL   17 (26)
T ss_pred             CCCCEEECCCCcCCcC
Confidence            4555666666665543

>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily

Probab=86.72  E-value=0.56  Score=29.31  Aligned_cols=16  Identities=50%  Similarity=0.536  Sum_probs=9.0

Q ss_pred             CCCCEEeCCCCcCCCC
Q 036375          874 HQLASLDLSSNNLSGG  889 (1009)
Q Consensus       874 ~~L~~L~Ls~N~l~~~  889 (1009)
                      ++|++|+|++|+|+..
T Consensus         2 ~~L~~L~L~~N~l~~l   17 (26)
T smart00369        2 PNLRELDLSNNQLSSL   17 (26)
T ss_pred             CCCCEEECCCCcCCcC
Confidence            4555666666665543

>KOG0473 consensus Leucine-rich repeat protein [Function unknown]

Probab=86.43  E-value=0.029  Score=55.26  Aligned_cols=80  Identities=24%  Similarity=0.280  Sum_probs=69.5

Q ss_pred             eEEEccCCccCCCCCccccCcCCCCeEEccCCcccccCCCCccCCCCCCEEeCCCCcCCCCCcccccCCCCCCeEeCCCC
Q 036375          829 HFIDLSGNNLHGDFPTQLTKLVGLVVLNLSRNHIGGQIPENISGLHQLASLDLSSNNLSGGIPSSLSSLSFLGYINLSRN  908 (1009)
Q Consensus       829 ~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~ls~N  908 (1009)
                      +.||++.|++-. .-..|.-++.|..||+|.|++. ..|..++++..+..+++..|..+ ..|.++...+.++++++-.|
T Consensus        45 tvld~~s~r~vn-~~~n~s~~t~~~rl~~sknq~~-~~~~d~~q~~e~~~~~~~~n~~~-~~p~s~~k~~~~k~~e~k~~  121 (326)
T KOG0473|consen   45 TVLDLSSNRLVN-LGKNFSILTRLVRLDLSKNQIK-FLPKDAKQQRETVNAASHKNNHS-QQPKSQKKEPHPKKNEQKKT  121 (326)
T ss_pred             eeehhhhhHHHh-hccchHHHHHHHHHhccHhhHh-hChhhHHHHHHHHHHHhhccchh-hCCccccccCCcchhhhccC
Confidence            789999998863 3455777888999999999998 66888999999999999999998 67999999999999999999


Q ss_pred             cce
Q 036375          909 QLS  911 (1009)
Q Consensus       909 ~l~  911 (1009)
                      .+.
T Consensus       122 ~~~  124 (326)
T KOG0473|consen  122 EFF  124 (326)
T ss_pred             cch
Confidence            874

>KOG0473 consensus Leucine-rich repeat protein [Function unknown]

Probab=85.89  E-value=0.04  Score=54.37  Aligned_cols=79  Identities=14%  Similarity=0.021  Sum_probs=65.8

Q ss_pred             CcEEEEecCCCCC--CCCCCCCCCcCCEEeCCCCCCCCCCCCcccCCCCCCceeecccCCCCccCCCCCCCCCCCCeeeC
Q 036375           75 GAIVAINLGNPYH--VVNSDSSGSLLEYLDLSFNTFNDIPIPEFLGSLENLQYLNLSEAGFTGVVPSSLGNLHRLQYFDV  152 (1009)
Q Consensus        75 ~~v~~l~l~~~~g--i~~~l~~l~~L~~LdLs~~~~~~~~lp~~i~~l~~L~~L~Ls~~~~~~~lp~~l~~L~~L~~L~L  152 (1009)
                      .||+.||++...-  +-..++.++.+..||++.|.+.-  +|..++....++.+++..|..+ ..|.+.+++++++++++
T Consensus        42 kr~tvld~~s~r~vn~~~n~s~~t~~~rl~~sknq~~~--~~~d~~q~~e~~~~~~~~n~~~-~~p~s~~k~~~~k~~e~  118 (326)
T KOG0473|consen   42 KRVTVLDLSSNRLVNLGKNFSILTRLVRLDLSKNQIKF--LPKDAKQQRETVNAASHKNNHS-QQPKSQKKEPHPKKNEQ  118 (326)
T ss_pred             ceeeeehhhhhHHHhhccchHHHHHHHHHhccHhhHhh--ChhhHHHHHHHHHHHhhccchh-hCCccccccCCcchhhh
Confidence            5789999887652  55667778889999999988876  7888888899999999888876 78999999999999998


Q ss_pred             CCcc
Q 036375          153 SAEL  156 (1009)
Q Consensus       153 s~~~  156 (1009)
                      .++.
T Consensus       119 k~~~  122 (326)
T KOG0473|consen  119 KKTE  122 (326)
T ss_pred             ccCc
Confidence            8874

>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily

Probab=85.89  E-value=0.48  Score=29.61  Aligned_cols=23  Identities=30%  Similarity=0.400  Sum_probs=17.1

Q ss_pred             cCCCCeEEccCCcccccCCCCcc
Q 036375          849 LVGLVVLNLSRNHIGGQIPENIS  871 (1009)
Q Consensus       849 l~~L~~L~Ls~N~l~~~~p~~l~  871 (1009)
                      +++|+.|+|++|+|+...+..|.
T Consensus         1 L~~L~~L~L~~N~l~~lp~~~f~   23 (26)
T smart00369        1 LPNLRELDLSNNQLSSLPPGAFQ   23 (26)
T ss_pred             CCCCCEEECCCCcCCcCCHHHcc
Confidence            46788899999998866555554

>smart00370 LRR Leucine-rich repeats, outliers

Probab=85.89  E-value=0.48  Score=29.61  Aligned_cols=23  Identities=30%  Similarity=0.400  Sum_probs=17.1

Q ss_pred             cCCCCeEEccCCcccccCCCCcc
Q 036375          849 LVGLVVLNLSRNHIGGQIPENIS  871 (1009)
Q Consensus       849 l~~L~~L~Ls~N~l~~~~p~~l~  871 (1009)
                      +++|+.|+|++|+|+...+..|.
T Consensus         1 L~~L~~L~L~~N~l~~lp~~~f~   23 (26)
T smart00370        1 LPNLRELDLSNNQLSSLPPGAFQ   23 (26)
T ss_pred             CCCCCEEECCCCcCCcCCHHHcc
Confidence            46788899999998866555554

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	1009
3rgx_A	768	Structural Insight Into Brassinosteroid Perception		2e-36
3riz_A	772	Crystal Structure Of The Plant Steroid Receptor Bri		3e-36
1ogq_A	313	The Crystal Structure Of Pgip (Polygalacturonase In		8e-16
2o6q_A	270	Structural Diversity Of The Hagfish Variable Lympho		1e-06
2o6q_A	270	Structural Diversity Of The Hagfish Variable Lympho		8e-05
2omx_A	462	Crystal Structure Of Inla S192n G194s+sHEC1 COMPLEX		9e-06
1w8a_A	192	Third Lrr Domain Of Drosophila Slit Length = 192		1e-05
2omt_A	462	Crystal Structure Of Inla G194s+sHEC1 COMPLEX Lengt		1e-05
2omu_A	462	Crystal Structure Of Inla G194s+s Y369s/hec1 Comple		1e-05
3fxi_A	605	Crystal Structure Of The Human Tlr4-Human Md-2-E.Co		2e-05
3e6j_A	229	Crystal Structure Of Variable Lymphocyte Receptor (		2e-05
4g8a_A	635	Crystal Structure Of Human Tlr4 Polymorphic Variant		2e-05
2omz_A	466	Crystal Structure Of Inla Y369a/hec1 Complex Length		6e-05
2omz_A	466	Crystal Structure Of Inla Y369a/hec1 Complex Length		6e-04
2z66_A	306	Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 A		2e-04
2omv_A	461	Crystal Structure Of Inla S192n Y369s/hec1 Complex		2e-04
2omv_A	461	Crystal Structure Of Inla S192n Y369s/hec1 Complex		3e-04
3zyj_A	440	Netring1 In Complex With Ngl1 Length = 440		2e-04
1p8t_A	285	Crystal Structure Of Nogo-66 Receptor Length = 285		3e-04
1ozn_A	285	1.5a Crystal Structure Of The Nogo Receptor Ligand		3e-04
2omy_A	461	Crystal Structure Of Inla S192n/hec1 Complex Length		3e-04
3zyn_A	321	Crystal Structure Of The N-Terminal Leucine Rich Re		4e-04
1o6s_A	466	Internalin (Listeria Monocytogenes) E-Cadherin (Hum		4e-04
1o6s_A	466	Internalin (Listeria Monocytogenes) E-Cadherin (Hum		6e-04
2id5_A	477	Crystal Structure Of The Lingo-1 Ectodomain Length		4e-04
2z64_A	599	Crystal Structure Of Mouse Tlr4 And Mouse Md-2 Comp		8e-04
3zyo_A	411	Crystal Structure Of The N-Terminal Leucine Rich Re		8e-04
3vq1_A	606	Crystal Structure Of Mouse Tlr4MD-2LIPID IVA COMPLE		8e-04

>pdb|3RGX|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1 Length = 768

Iteration: 1
 Score =  151 bits (381), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 204/762 (26%), Positives = 306/762 (40%), Gaps = 157/762 (20%)
Query: 254 LSDCDLYGRIPIGFGELPNLQYLSLAGNNNLSGSCSQLFR-GSWKKIQILNFASNKLHGK 312
           LS+  + G +  GF    +L  L L+  N+LSG  + L   GS   ++ LN +SN L   
Sbjct: 84  LSNSHINGSVS-GFKCSASLTSLDLS-RNSLSGPVTTLTSLGSCSGLKFLNVSSNTLD-- 139
Query: 313 LPSSVANMTSLTNFDLFDKKVEGGIPSSIARLCYLKEFDLSGNNLTGSLPEILQGTDLCV 372
                           F  KV GG+     +L  L+  DLS N+++G+       +D C 
Sbjct: 140 ----------------FPGKVSGGL-----KLNSLEVLDLSANSISGANVVGWVLSDGC- 177
Query: 373 SSNSPLPSLISMRLGNNHLKGKLPEWLSQLENLVELTLSYNLLQGPIPASXXXXXXXXXX 432
                   L  + +  N + G +   +S+  NL  L +S N     IP            
Sbjct: 178 ------GELKHLAISGNKISGDVD--VSRCVNLEFLDVSSNNFSTGIPF----------- 218
Query: 433 XXXXXQLNGTLPETLGSLPELSVLDVSSNSLTGIISEIHFSRLSKLKFLGXXXXXXXXXX 492
                         LG    L  LD+S N L+G  S    S  ++LK L           
Sbjct: 219 --------------LGDCSALQHLDISGNKLSGDFSRA-ISTCTELKLLNISSNQFVGP- 262
Query: 493 XXXWIPPFQVQSLNMRSC---QLGPSFPSWLK-TQQGVSFLDFSNASISGPIPNWFWDIX 548
               IPP  ++SL   S    +     P +L      ++ LD S     G +P +F    
Sbjct: 263 ----IPPLPLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCS 318
Query: 549 XXXXXXXXXXXXXXXXXXXXXXIAPFADVDFRSNLLEGPIP----LPIVEIELLDLSNNH 604
                                       +   SN   G +P    L +  +++LDLS N 
Sbjct: 319 LL------------------------ESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNE 354
Query: 605 FSGPIPQNISGSMPNLIFLSVSGNRLTGKIPGSIGE--MQLLQVIDLSRNXXXXXXXXXX 662
           FSG +P++++    +L+ L +S N  +G I  ++ +     LQ + L  N          
Sbjct: 355 FSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTL 414
Query: 663 XNCTFLKVLDLSYSSLSGVIPASLGQLTRLQSLHL------------------------N 698
            NC+ L  L LS++ LSG IP+SLG L++L+ L L                        +
Sbjct: 415 SNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILD 474
Query: 699 NNKLTGNLPSSFQNLTSLETLDLGNNRFSGNIPSLLGNGFVGLRILSLRSNAFSGEIPSK 758
            N LTG +PS   N T+L  + L NNR +G IP  +G     L IL L +N+FSG IP++
Sbjct: 475 FNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGR-LENLAILKLSNNSFSGNIPAE 533
Query: 759 LSNLSSLQVLDLAENNLTGSIPGSV----GDL-------KAMAHVQNI-VKYLLFG---- 802
           L +  SL  LDL  N   G+IP ++    G +       K   +++N  +K    G    
Sbjct: 534 LGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNL 593
Query: 803 -RYRGIYYEENLVINTKGSSKDTPRLF--------------HFIDLSGNNLHGDFPTQLT 847
             ++GI  E+   ++T+     T R++               F+D+S N L G  P ++ 
Sbjct: 594 LEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIG 653
Query: 848 KLVGLVVLNLSRNHIGGQIPENISGLHQXXXXXXXXXXXXXXXXXXXXXXXXXXYINLSR 907
            +  L +LNL  N I G IP+ +  L                             I+LS 
Sbjct: 654 SMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSN 713
Query: 908 NQLSGKIPFEGHMTTFDASSFAGNPGLCGDPLPVKCQDDESD 949
           N LSG IP  G   TF  + F  NPGLCG PLP +C    +D
Sbjct: 714 NNLSGPIPEMGQFETFPPAKFLNNPGLCGYPLP-RCDPSNAD 754

>pdb|3RIZ|A Chain A, Crystal Structure Of The Plant Steroid Receptor Bri1 Ectodomain Length = 772

Iteration: 1
 Score =  150 bits (380), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 201/738 (27%), Positives = 297/738 (40%), Gaps = 109/738 (14%)
Query: 254 LSDCDLYGRIPIGFGELPNLQYLSLAGNNNLSGSCSQLFR-GSWKKIQILNFASNKLHGK 312
           LS+  + G +  GF    +L  L L+  N+LSG  + L   GS   ++ LN +SN L   
Sbjct: 81  LSNSHINGSVS-GFKCSASLTSLDLS-RNSLSGPVTTLTSLGSCSGLKFLNVSSNTLD-- 136
Query: 313 LPSSVANMTSLTNFDLFDKKVEGGIPSSIARLCYLKEFDLSGNNLTGSLPEILQGTDLCV 372
                           F  KV GG+     +L  L+  DLS N+++G+       +D C 
Sbjct: 137 ----------------FPGKVSGGL-----KLNSLEVLDLSANSISGANVVGWVLSDGC- 174
Query: 373 SSNSPLPSLISMRLGNNHLKGKLPEWLSQLENLVELTLSYNLLQGPIPASXXXXXXXXXX 432
                   L  + +  N + G +   +S+  NL  L +S N     IP            
Sbjct: 175 ------GELKHLAISGNKISGDVD--VSRCVNLEFLDVSSNNFSTGIPF----------- 215
Query: 433 XXXXXQLNGTLPETLGSLPELSVLDVSSNSLTGIISEIHFSRLSKLKFLGXXXXXXXXXX 492
                         LG    L  LD+S N L+G  S    S  ++LK L           
Sbjct: 216 --------------LGDCSALQHLDISGNKLSGDFSRA-ISTCTELKLLNISSNQFVGP- 259
Query: 493 XXXWIPPFQVQSLNMRSC---QLGPSFPSWLKTQ-QGVSFLDFSNASISGPIPNWFWDIX 548
               IPP  ++SL   S    +     P +L      ++ LD S     G +P +F    
Sbjct: 260 ----IPPLPLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCS 315
Query: 549 XXXXXXXXXXXXXXXX-XXXXXXIAPFADVDFRSNLLEGPIPLPIVEIE----LLDLSNN 603
                                  +     +D   N   G +P  +  +      LDLS+N
Sbjct: 316 LLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSN 375
Query: 604 HFSGPIPQNISGSMPN-LIFLSVSGNRLTGKIPGSIGEMQLLQVIDLSRNXXXXXXXXXX 662
           +FSGPI  N+  +  N L  L +  N  TGKIP ++     L  + LS N          
Sbjct: 376 NFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSL 435
Query: 663 XNCTFLKVLDLSYSSLSGVIPASLGQLTRLQSLHLNNNKLTGNLPSSFQNLTSLETLDLG 722
            + + L+ L L  + L G IP  L  +  L++L L+ N LTG +PS   N T+L  + L 
Sbjct: 436 GSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLS 495
Query: 723 NNRFSGNIPSLLGNGFVGLRILSLRSNAFSGEIPSKLSNLSSLQVLDLAENNLTGSIPGS 782
           NNR +G IP  +G     L IL L +N+FSG IP++L +  SL  LDL  N   G+IP +
Sbjct: 496 NNRLTGEIPKWIGR-LENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAA 554
Query: 783 V----GDL-------KAMAHVQNI-VKYLLFG-----RYRGIYYEENLVINTKGSSKDTP 825
           +    G +       K   +++N  +K    G      ++GI  E+   ++T+     T 
Sbjct: 555 MFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITS 614
Query: 826 RLF--------------HFIDLSGNNLHGDFPTQLTKLVGLVVLNLSRNHIGGQIPENIS 871
           R++               F+D+S N L G  P ++  +  L +LNL  N I G IP+ + 
Sbjct: 615 RVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVG 674
Query: 872 GLHQXXXXXXXXXXXXXXXXXXXXXXXXXXYINLSRNQLSGKIPFEGHMTTFDASSFAGN 931
            L                             I+LS N LSG IP  G   TF  + F  N
Sbjct: 675 DLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPEMGQFETFPPAKFLNN 734
Query: 932 PGLCGDPLPVKCQDDESD 949
           PGLCG PLP +C    +D
Sbjct: 735 PGLCGYPLP-RCDPSNAD 751

>pdb|1OGQ|A Chain A, The Crystal Structure Of Pgip (Polygalacturonase Inhibiting Protein), A Leucine Rich Repeat Protein Involved In Plant Defense Length = 313

Iteration: 1
 Score = 83.2 bits (204), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 87/335 (25%), Positives = 136/335 (40%), Gaps = 91/335 (27%)
Query: 608 PIPQNISGSMPNLIFLSVSG-NRLTGKIPGSIGEMQLLQVIDLSRNXXXXXXXXXXXNCT 666
           PIP +++ ++P L FL + G N L G IP +I ++                        T
Sbjct: 67  PIPSSLA-NLPYLNFLYIGGINNLVGPIPPAIAKL------------------------T 101
Query: 667 FLKVLDLSYSSLSGVIPASLGQLTRLQSLHLNNNKLTGNLPSSFQNLTSLETLDLGNNRF 726
            L  L ++++++SG IP  L Q+  L +L  + N L+G LP S  +L +L  +    NR 
Sbjct: 102 QLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRI 161
Query: 727 SGNIPSLLGNGFVGLRILSLRSNAFSGEIPSKLSNLSSLQVLDLAENNLTGSIPGSVGDL 786
           SG IP   G+       +++  N  +G+IP   +NL +L  +DL+ N L G      G  
Sbjct: 162 SGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANL-NLAFVDLSRNMLEGDASVLFGSD 220
Query: 787 KAMAHVQNIVKYLLFGRYRGIYYEENLVINTKGSSKDTPRLFHFIDLSGNNLHGDFPTQL 846
           K    +      L F             +   G SK+     + +DL  N ++G  P  L
Sbjct: 221 KNTQKIHLAKNSLAFD------------LGKVGLSKN----LNGLDLRNNRIYGTLPQGL 264
Query: 847 TKLVGLVVLNLSRNHIGGQIPENISGLHQXXXXXXXXXXXXXXXXXXXXXXXXXXYINLS 906
           T+L  L  LN+S N++ G+IP+                                      
Sbjct: 265 TQLKFLHSLNVSFNNLCGEIPQG------------------------------------- 287
Query: 907 RNQLSGKIPFEGHMTTFDASSFAGNPGLCGDPLPV 941
                      G++  FD S++A N  LCG PLP 
Sbjct: 288 -----------GNLQRFDVSAYANNKCLCGSPLPA 311

>pdb|2O6Q|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte Receptors A29 Length = 270

Iteration: 1
 Score = 44.3 bits (103), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 52/198 (26%), Positives = 80/198 (40%), Gaps = 4/198 (2%)
Query: 577 VDFRSNLLEG-PIPLPIVEIELLDLSNNHFSGPIPQNISGSMPNLIFLSVSGNRLTGKIP 635
           VD  S  L   P  +P  + + LDL +N  S  +P      +  L  L ++ N+L     
Sbjct: 21  VDCSSKKLTAIPSNIP-ADTKKLDLQSNKLSS-LPSKAFHRLTKLRLLYLNDNKLQTLPA 78
Query: 636 GSIGEMQLLQVIDLSRNXXXXXXXXXXXNCTFLKVLDLSYSSLSGVIPASLGQLTRLQSL 695
           G   E++ L+ + ++ N               L  L L  + L  + P     LT+L  L
Sbjct: 79  GIFKELKNLETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYL 138
Query: 696 HLNNNKLTGNLPSSFQNLTSLETLDLGNNRFSGNIPSLLGNGFVGLRILSLRSNAFSGEI 755
            L  N+L       F  LTSL+ L L NN+    +P    +    L+ L L +N      
Sbjct: 139 SLGYNELQSLPKGVFDKLTSLKELRLYNNQLK-RVPEGAFDKLTELKTLKLDNNQLKRVP 197
Query: 756 PSKLSNLSSLQVLDLAEN 773
                +L  L++L L EN
Sbjct: 198 EGAFDSLEKLKMLQLQEN 215

>pdb|2O6Q|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte Receptors A29 Length = 270

Iteration: 1
 Score = 46.6 bits (109), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 46/141 (32%), Positives = 70/141 (49%), Gaps = 8/141 (5%)
Query: 669 KVLDLSYSSLSGVIPASLGQLTRLQSLHLNNNKLTGNLPSS-FQNLTSLETLDLGNNRFS 727
           K LDL  + LS +   +  +LT+L+ L+LN+NKL   LP+  F+ L +LETL + +N+  
Sbjct: 40  KKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQ-TLPAGIFKELKNLETLWVTDNKLQ 98
Query: 728 GNIPSLLGNGFVGLRILSLRSNAFSGEIPSKLSNLSSLQVLDLAENNLTGSIPGSVGD-- 785
             +P  + +  V L  L L  N      P    +L+ L  L L  N L  S+P  V D  
Sbjct: 99  A-LPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQ-SLPKGVFDKL 156
Query: 786 --LKAMAHVQNIVKYLLFGRY 804
             LK +    N +K +  G +
Sbjct: 157 TSLKELRLYNNQLKRVPEGAF 177

>pdb|2OMX|A Chain A, Crystal Structure Of Inla S192n G194s+sHEC1 COMPLEX Length = 462

Iteration: 1
 Score = 49.7 bits (117), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 89/306 (29%), Positives = 144/306 (47%), Gaps = 46/306 (15%)
Query: 120 LENLQYLNLSEAGFTGVVPSSLGNLHRLQYFDVSAELFALSADSLDWLTGLVSLKHLAMN 179
           L NL  +N S    T + P  L NL +L   D+      ++ + +  +T L +L +L   
Sbjct: 62  LNNLTQINFSNNQLTDITP--LKNLTKL--VDI-----LMNNNQIADITPLANLTNLT-- 110
Query: 180 RVDLSLVGSEWLGI--LKNLPNLTELHLSVCGLTGSITSITPVN-LTSPAVLDLSLNHFN 236
              L+L  ++   I  LKNL NL  L LS    + +I+ I+ ++ LTS   L+ S N   
Sbjct: 111 --GLTLFNNQITDIDPLKNLTNLNRLELS----SNTISDISALSGLTSLQQLNFSSNQVT 164
Query: 237 SLFPNWLVNISTLVYVDLSDCDLYGRIPIGFGELPNLQYLSLAGNNNLSGSCSQLFRGSW 296
            L P  L N++TL  +D+S  +    I +   +L NL+ L +A NN +S        G  
Sbjct: 165 DLKP--LANLTTLERLDIS-SNKVSDISV-LAKLTNLESL-IATNNQISDITP---LGIL 216
Query: 297 KKIQILNFASNKLHGKLPSSVANMTSLTNFDLFDKKVEGGIPSSIARLCYLKEFDLSGNN 356
             +  L+   N+L  K   ++A++T+LT+ DL + ++    P  ++ L  L E  L  N 
Sbjct: 217 TNLDELSLNGNQL--KDIGTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQ 272
Query: 357 LTGSLPEILQGTDLCVSSNSPLPSLISMRLGNNHLKGKLPEWLSQLENLVELTLSYNLLQ 416
           ++   P  L G          L +L ++ L  N L+   P  +S L+NL  LTL +N + 
Sbjct: 273 ISNISP--LAG----------LTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNIS 318
Query: 417 GPIPAS 422
              P S
Sbjct: 319 DISPVS 324

>pdb|1W8A|A Chain A, Third Lrr Domain Of Drosophila Slit Length = 192

Iteration: 1
 Score = 49.3 bits (116), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 55/202 (27%), Positives = 91/202 (45%), Gaps = 30/202 (14%)
Query: 583 LLEGPIPLPIVEIELLDLSNNHFSGPIPQNISGSMPNLIFLSVSGNRLTGKIPGSIGEMQ 642
           L E P  +P+   ELL L++N         + G +P+L+ L +  N+LTG  P +     
Sbjct: 20  LKEIPRDIPLHTTELL-LNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGAS 78
Query: 643 LLQVIDLSRNXXXXXXXXXXXNCTFLKVLDLSYSSLSGVIPASLGQLTRLQSLHLNNNKL 702
            +Q + L  N                K+ ++S     G        L +L++L+L +N++
Sbjct: 79  HIQELQLGEN----------------KIKEISNKMFLG--------LHQLKTLNLYDNQI 114
Query: 703 TGNLPSSFQNLTSLETLDLGNNRFSGNIPSLLGNGFVGLRILSLRSNAFSGEIPSKLSNL 762
           +  +P SF++L SL +L+L +N F+ N    L      LR  SL   A     PSK+ + 
Sbjct: 115 SCVMPGSFEHLNSLTSLNLASNPFNCNCH--LAWFAEWLRKKSLNGGAARCGAPSKVRD- 171
Query: 763 SSLQVLDLAENNLTGSIPGSVG 784
             +Q+ DL  +    S   S G
Sbjct: 172 --VQIKDLPHSEFKCSSENSEG 191

>pdb|2OMT|A Chain A, Crystal Structure Of Inla G194s+sHEC1 COMPLEX Length = 462

Iteration: 1
 Score = 48.9 bits (115), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 89/306 (29%), Positives = 143/306 (46%), Gaps = 46/306 (15%)
Query: 120 LENLQYLNLSEAGFTGVVPSSLGNLHRLQYFDVSAELFALSADSLDWLTGLVSLKHLAMN 179
           L NL  +N S    T + P  L NL +L   D+      ++ + +  +T L +L +L   
Sbjct: 62  LNNLTQINFSNNQLTDITP--LKNLTKL--VDI-----LMNNNQIADITPLANLTNLT-- 110
Query: 180 RVDLSLVGSEWLGI--LKNLPNLTELHLSVCGLTGSITSITPVN-LTSPAVLDLSLNHFN 236
              L+L  ++   I  LKNL NL  L LS    + +I+ I+ ++ LTS   L  S N   
Sbjct: 111 --GLTLFNNQITDIDPLKNLTNLNRLELS----SNTISDISALSGLTSLQQLSFSSNQVT 164
Query: 237 SLFPNWLVNISTLVYVDLSDCDLYGRIPIGFGELPNLQYLSLAGNNNLSGSCSQLFRGSW 296
            L P  L N++TL  +D+S  +    I +   +L NL+ L +A NN +S        G  
Sbjct: 165 DLKP--LANLTTLERLDIS-SNKVSDISV-LAKLTNLESL-IATNNQISDITP---LGIL 216
Query: 297 KKIQILNFASNKLHGKLPSSVANMTSLTNFDLFDKKVEGGIPSSIARLCYLKEFDLSGNN 356
             +  L+   N+L  K   ++A++T+LT+ DL + ++    P  ++ L  L E  L  N 
Sbjct: 217 TNLDELSLNGNQL--KDIGTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQ 272
Query: 357 LTGSLPEILQGTDLCVSSNSPLPSLISMRLGNNHLKGKLPEWLSQLENLVELTLSYNLLQ 416
           ++   P  L G          L +L ++ L  N L+   P  +S L+NL  LTL +N + 
Sbjct: 273 ISNISP--LAG----------LTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNIS 318
Query: 417 GPIPAS 422
              P S
Sbjct: 319 DISPVS 324

>pdb|2OMU|A Chain A, Crystal Structure Of Inla G194s+s Y369s/hec1 Complex Length = 462

Iteration: 1
 Score = 48.9 bits (115), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 89/306 (29%), Positives = 143/306 (46%), Gaps = 46/306 (15%)
Query: 120 LENLQYLNLSEAGFTGVVPSSLGNLHRLQYFDVSAELFALSADSLDWLTGLVSLKHLAMN 179
           L NL  +N S    T + P  L NL +L   D+      ++ + +  +T L +L +L   
Sbjct: 62  LNNLTQINFSNNQLTDITP--LKNLTKL--VDI-----LMNNNQIADITPLANLTNLT-- 110
Query: 180 RVDLSLVGSEWLGI--LKNLPNLTELHLSVCGLTGSITSITPVN-LTSPAVLDLSLNHFN 236
              L+L  ++   I  LKNL NL  L LS    + +I+ I+ ++ LTS   L  S N   
Sbjct: 111 --GLTLFNNQITDIDPLKNLTNLNRLELS----SNTISDISALSGLTSLQQLSFSSNQVT 164
Query: 237 SLFPNWLVNISTLVYVDLSDCDLYGRIPIGFGELPNLQYLSLAGNNNLSGSCSQLFRGSW 296
            L P  L N++TL  +D+S  +    I +   +L NL+ L +A NN +S        G  
Sbjct: 165 DLKP--LANLTTLERLDIS-SNKVSDISV-LAKLTNLESL-IATNNQISDITP---LGIL 216
Query: 297 KKIQILNFASNKLHGKLPSSVANMTSLTNFDLFDKKVEGGIPSSIARLCYLKEFDLSGNN 356
             +  L+   N+L  K   ++A++T+LT+ DL + ++    P  ++ L  L E  L  N 
Sbjct: 217 TNLDELSLNGNQL--KDIGTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQ 272
Query: 357 LTGSLPEILQGTDLCVSSNSPLPSLISMRLGNNHLKGKLPEWLSQLENLVELTLSYNLLQ 416
           ++   P  L G          L +L ++ L  N L+   P  +S L+NL  LTL +N + 
Sbjct: 273 ISNISP--LAG----------LTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNIS 318
Query: 417 GPIPAS 422
              P S
Sbjct: 319 DISPVS 324

>pdb|3FXI|A Chain A, Crystal Structure Of The Human Tlr4-Human Md-2-E.Coli Lps Ra Complex Length = 605

Iteration: 1
 Score = 48.5 bits (114), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 52/184 (28%), Positives = 84/184 (45%), Gaps = 18/184 (9%)
Query: 106 NTFNDIPIPEFLGSLENLQYLNLSEAG--FTGVVPSSLGNLHRLQYFDVSAE-LFALSAD 162
           N F+++ +P       +L++L+LS  G  F G    S      L+Y D+S   +  +S++
Sbjct: 339 NAFSEVDLP-------SLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSN 391
Query: 163 SLDWLTGLVSLKHLAMNRVDLSLVGSEWLGILKNLPNLTELHLSVCGLTGSITSITPVNL 222
            L    GL  L+HL     +L  +      +  +L NL  L +S      +   I    L
Sbjct: 392 FL----GLEQLEHLDFQHSNLKQMSE--FSVFLSLRNLIYLDISHTHTRVAFNGIFN-GL 444
Query: 223 TSPAVLDLSLNHFNSLF-PNWLVNISTLVYVDLSDCDLYGRIPIGFGELPNLQYLSLAGN 281
           +S  VL ++ N F   F P+    +  L ++DLS C L    P  F  L +LQ L+++ N
Sbjct: 445 SSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHN 504
Query: 282 NNLS 285
           N  S
Sbjct: 505 NFFS 508

>pdb|3E6J|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor (Vlr) Rbc36 In Complex With H-Trisaccharide Length = 229

Iteration: 1
 Score = 48.1 bits (113), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 47/157 (29%), Positives = 74/157 (47%), Gaps = 15/157 (9%)
Query: 666 TFLKVLDLSYSSLSGVIPASLGQLTRLQSLHLNNNKLTGNLPSS-FQNLTSLETLDLGNN 724
           T  ++L L  + ++ + P     L  L+ L+L +N+L G LP   F +LT L  LDLG N
Sbjct: 40  TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQL-GALPVGVFDSLTQLTVLDLGTN 98
Query: 725 RFSGNIPSLLGNGFVGLRILSLRSNAFSGEIPSKLSNLSSLQVLDLAENNLTGSIPGSVG 784
           + +  +PS + +  V L+ L +  N  + E+P  +  L+ L  L L +N L     G+  
Sbjct: 99  QLTV-LPSAVFDRLVHLKELFMCCNKLT-ELPRGIERLTHLTHLALDQNQLKSIPHGAFD 156
Query: 785 DLKAMAHVQNIVKYLLFG-----RYRGIYYEENLVIN 816
            L ++ H        LFG       R I Y  N V +
Sbjct: 157 RLSSLTHA------YLFGNPWDCECRDIMYLRNWVAD 187

>pdb|4G8A|A Chain A, Crystal Structure Of Human Tlr4 Polymorphic Variant D299g And T399i In Complex With Md-2 And Lps Length = 635

Iteration: 1
 Score = 48.1 bits (113), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 52/184 (28%), Positives = 84/184 (45%), Gaps = 18/184 (9%)
Query: 106 NTFNDIPIPEFLGSLENLQYLNLSEAG--FTGVVPSSLGNLHRLQYFDVSAE-LFALSAD 162
           N F+++ +P       +L++L+LS  G  F G    S      L+Y D+S   +  +S++
Sbjct: 363 NAFSEVDLP-------SLEFLDLSRNGLSFKGCCSQSDFGTISLKYLDLSFNGVITMSSN 415
Query: 163 SLDWLTGLVSLKHLAMNRVDLSLVGSEWLGILKNLPNLTELHLSVCGLTGSITSITPVNL 222
            L    GL  L+HL     +L  +      +  +L NL  L +S      +   I    L
Sbjct: 416 FL----GLEQLEHLDFQHSNLKQMSE--FSVFLSLRNLIYLDISHTHTRVAFNGIFN-GL 468
Query: 223 TSPAVLDLSLNHFNSLF-PNWLVNISTLVYVDLSDCDLYGRIPIGFGELPNLQYLSLAGN 281
           +S  VL ++ N F   F P+    +  L ++DLS C L    P  F  L +LQ L+++ N
Sbjct: 469 SSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHN 528
Query: 282 NNLS 285
           N  S
Sbjct: 529 NFFS 532

>pdb|2OMZ|A Chain A, Crystal Structure Of Inla Y369a/hec1 Complex Length = 466

Iteration: 1
 Score = 46.6 bits (109), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 76/242 (31%), Positives = 116/242 (47%), Gaps = 38/242 (15%)
Query: 98  LEYLDLSFNTFNDIPIPEFLGSLENLQYLNLSEAGFTGVVPSSLGNLHRLQYFDVSAELF 157
           L  L+LS NT +DI     L SL+ L + N      T + P  L NL  L+  D+S+   
Sbjct: 135 LNRLELSSNTISDISALSGLTSLQQLSFGN----QVTDLKP--LANLTTLERLDISSNKV 188
Query: 158 ALSADSLDWLTGLVSLKH------------LAMNRVDLSLVGSEW--LGILKNLPNLTEL 203
           +     L  LT L SL              +  N  +LSL G++   +G L +L NLT+L
Sbjct: 189 S-DISVLAKLTNLESLIATNNQISDITPLGILTNLDELSLNGNQLKDIGTLASLTNLTDL 247
Query: 204 HLSVCGLTGSITSITPVN-LTSPAVLDLSLNHFNSLFPNWLVNISTLVYVDLSDCDLYGR 262
            L+       I+++ P++ LT    L L  N  +++ P  L  ++ L  ++L++  L   
Sbjct: 248 DLA----NNQISNLAPLSGLTKLTELKLGANQISNISP--LAGLTALTNLELNENQLEDI 301
Query: 263 IPIGFGELPNLQYLSLAGNNNLSGSCSQLF-RGSWKKIQILNFASNKLHGKLPSSVANMT 321
            PI    L NL YL+L  NN      S +    S  K+Q L FA+NK+     SS+AN+T
Sbjct: 302 SPI--SNLKNLTYLTLYFNN-----ISDISPVSSLTKLQRLFFANNKVSDV--SSLANLT 352
Query: 322 SL 323
           ++
Sbjct: 353 NI 354

>pdb|2OMZ|A Chain A, Crystal Structure Of Inla Y369a/hec1 Complex Length = 466

Iteration: 1
 Score = 43.5 bits (101), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 88/306 (28%), Positives = 142/306 (46%), Gaps = 47/306 (15%)
Query: 120 LENLQYLNLSEAGFTGVVPSSLGNLHRLQYFDVSAELFALSADSLDWLTGLVSLKHLAMN 179
           L NL  +N S    T + P  L NL +L   D+      ++ + +  +T L +L +L   
Sbjct: 66  LNNLTQINFSNNQLTDITP--LKNLTKL--VDI-----LMNNNQIADITPLANLTNLT-- 114
Query: 180 RVDLSLVGSEWLGI--LKNLPNLTELHLSVCGLTGSITSITPVN-LTSPAVLDLSLNHFN 236
              L+L  ++   I  LKNL NL  L LS    + +I+ I+ ++ LTS   L    N   
Sbjct: 115 --GLTLFNNQITDIDPLKNLTNLNRLELS----SNTISDISALSGLTSLQQLSFG-NQVT 167
Query: 237 SLFPNWLVNISTLVYVDLSDCDLYGRIPIGFGELPNLQYLSLAGNNNLSGSCSQLFRGSW 296
            L P  L N++TL  +D+S  +    I +   +L NL+ L +A NN +S        G  
Sbjct: 168 DLKP--LANLTTLERLDIS-SNKVSDISV-LAKLTNLESL-IATNNQISDITP---LGIL 219
Query: 297 KKIQILNFASNKLHGKLPSSVANMTSLTNFDLFDKKVEGGIPSSIARLCYLKEFDLSGNN 356
             +  L+   N+L  K   ++A++T+LT+ DL + ++    P  ++ L  L E  L  N 
Sbjct: 220 TNLDELSLNGNQL--KDIGTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQ 275
Query: 357 LTGSLPEILQGTDLCVSSNSPLPSLISMRLGNNHLKGKLPEWLSQLENLVELTLSYNLLQ 416
           ++   P  L G          L +L ++ L  N L+   P  +S L+NL  LTL +N + 
Sbjct: 276 ISNISP--LAG----------LTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNIS 321
Query: 417 GPIPAS 422
              P S
Sbjct: 322 DISPVS 327

>pdb|2Z66|A Chain A, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And Hagfish Vlrb.61 Length = 306

Iteration: 1
 Score = 45.4 bits (106), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 57/189 (30%), Positives = 85/189 (44%), Gaps = 12/189 (6%)
Query: 101 LDLSFNTFNDIPIPEFLGSLENLQYLNLSEAG--FTGVVPSSLGNLHRLQYFDVSAE-LF 157
           L+L  N    +P   F   L  L  L+LS  G  F G    S      L+Y D+S   + 
Sbjct: 33  LELESNKLQSLPHGVF-DKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVI 91
Query: 158 ALSADSLDWLTGLVSLKHLAMNRVDLSLVGSEWLGILKNLPNLTELHLSVCGLTGSITSI 217
            +S++ L    GL  L+HL     +L  + SE+  +  +L NL  L +S      +   I
Sbjct: 92  TMSSNFL----GLEQLEHLDFQHSNLKQM-SEF-SVFLSLRNLIYLDISHTHTRVAFNGI 145
Query: 218 TPVNLTSPAVLDLSLNHFNSLF-PNWLVNISTLVYVDLSDCDLYGRIPIGFGELPNLQYL 276
               L+S  VL ++ N F   F P+    +  L ++DLS C L    P  F  L +LQ L
Sbjct: 146 FN-GLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVL 204
Query: 277 SLAGNNNLS 285
           +++ NN  S
Sbjct: 205 NMSHNNFFS 213

>pdb|2OMV|A Chain A, Crystal Structure Of Inla S192n Y369s/hec1 Complex Length = 461

Iteration: 1
 Score = 45.1 bits (105), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 75/242 (30%), Positives = 116/242 (47%), Gaps = 38/242 (15%)
Query: 98  LEYLDLSFNTFNDIPIPEFLGSLENLQYLNLSEAGFTGVVPSSLGNLHRLQYFDVSAELF 157
           L  L+LS NT +DI     L SL+ L + N      T + P  L NL  L+  D+S+   
Sbjct: 131 LNRLELSSNTISDISALSGLTSLQQLNFGN----QVTDLKP--LANLTTLERLDISSNKV 184
Query: 158 ALSADSLDWLTGLVSLKH------------LAMNRVDLSLVGSEW--LGILKNLPNLTEL 203
           +     L  LT L SL              +  N  +LSL G++   +G L +L NLT+L
Sbjct: 185 S-DISVLAKLTNLESLIATNNQISDITPLGILTNLDELSLNGNQLKDIGTLASLTNLTDL 243
Query: 204 HLSVCGLTGSITSITPVN-LTSPAVLDLSLNHFNSLFPNWLVNISTLVYVDLSDCDLYGR 262
            L+       I+++ P++ LT    L L  N  +++ P  L  ++ L  ++L++  L   
Sbjct: 244 DLA----NNQISNLAPLSGLTKLTELKLGANQISNISP--LAGLTALTNLELNENQLEDI 297
Query: 263 IPIGFGELPNLQYLSLAGNNNLSGSCSQLF-RGSWKKIQILNFASNKLHGKLPSSVANMT 321
            PI    L NL YL+L  NN      S +    S  K+Q L F++NK+     SS+AN+T
Sbjct: 298 SPI--SNLKNLTYLTLYFNN-----ISDISPVSSLTKLQRLFFSNNKVSDV--SSLANLT 348
Query: 322 SL 323
           ++
Sbjct: 349 NI 350

>pdb|2OMV|A Chain A, Crystal Structure Of Inla S192n Y369s/hec1 Complex Length = 461

Iteration: 1
 Score = 44.3 bits (103), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 88/306 (28%), Positives = 143/306 (46%), Gaps = 47/306 (15%)
Query: 120 LENLQYLNLSEAGFTGVVPSSLGNLHRLQYFDVSAELFALSADSLDWLTGLVSLKHLAMN 179
           L NL  +N S    T + P  L NL +L   D+      ++ + +  +T L +L +L   
Sbjct: 62  LNNLTQINFSNNQLTDITP--LKNLTKL--VDI-----LMNNNQIADITPLANLTNLT-- 110
Query: 180 RVDLSLVGSEWLGI--LKNLPNLTELHLSVCGLTGSITSITPVN-LTSPAVLDLSLNHFN 236
              L+L  ++   I  LKNL NL  L LS    + +I+ I+ ++ LTS   L+   N   
Sbjct: 111 --GLTLFNNQITDIDPLKNLTNLNRLELS----SNTISDISALSGLTSLQQLNFG-NQVT 163
Query: 237 SLFPNWLVNISTLVYVDLSDCDLYGRIPIGFGELPNLQYLSLAGNNNLSGSCSQLFRGSW 296
            L P  L N++TL  +D+S  +    I +   +L NL+ L +A NN +S        G  
Sbjct: 164 DLKP--LANLTTLERLDIS-SNKVSDISV-LAKLTNLESL-IATNNQISDITP---LGIL 215
Query: 297 KKIQILNFASNKLHGKLPSSVANMTSLTNFDLFDKKVEGGIPSSIARLCYLKEFDLSGNN 356
             +  L+   N+L  K   ++A++T+LT+ DL + ++    P  ++ L  L E  L  N 
Sbjct: 216 TNLDELSLNGNQL--KDIGTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQ 271
Query: 357 LTGSLPEILQGTDLCVSSNSPLPSLISMRLGNNHLKGKLPEWLSQLENLVELTLSYNLLQ 416
           ++   P  L G          L +L ++ L  N L+   P  +S L+NL  LTL +N + 
Sbjct: 272 ISNISP--LAG----------LTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNIS 317
Query: 417 GPIPAS 422
              P S
Sbjct: 318 DISPVS 323

>pdb|3ZYJ|A Chain A, Netring1 In Complex With Ngl1 Length = 440

Iteration: 1
 Score = 45.1 bits (105), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 51/187 (27%), Positives = 83/187 (44%), Gaps = 8/187 (4%)
Query: 609 IPQNISGSMPNLIFLSVSGNRLTGKIPGSIGEMQLLQVIDLSRNXXXXXXXXXXXNCTFL 668
           +P  IS    N   L++  N++      S   ++ L+++ LSRN               L
Sbjct: 58  VPDGIST---NTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANL 114
Query: 669 KVLDLSYSSLSGVIPASLGQLTRLQSLHLNNNKLTGNLPSSFQNLTSLETLDLGNNRFSG 728
             L+L  + L+ +   +   L++L+ L L NN +      +F  + SL  LDLG  +   
Sbjct: 115 NTLELFDNRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLS 174
Query: 729 NIPSLLGNGFVGLRILSLRSNAFSGEIPSKLSNLSSLQVLDLAENNLTGSIPGSVGDLKA 788
            I      G   LR L+L       EIP+ L+ L  L  LDL+ N+L+   PGS    + 
Sbjct: 175 YISEGAFEGLSNLRYLNLAMCNLR-EIPN-LTPLIKLDELDLSGNHLSAIRPGS---FQG 229
Query: 789 MAHVQNI 795
           + H+Q +
Sbjct: 230 LMHLQKL 236

>pdb|1P8T|A Chain A, Crystal Structure Of Nogo-66 Receptor Length = 285

Iteration: 1
 Score = 44.7 bits (104), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 54/198 (27%), Positives = 79/198 (39%), Gaps = 28/198 (14%)
Query: 621 IFLSVSGNRLTGKIPGSIGEMQLLQVIDLSRNXXXXXXXXXXXNCTFLKVLDLS-YSSLS 679
           IFL   GNR++     S    + L ++ L  N               L+ LDLS  + L 
Sbjct: 36  IFLH--GNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLR 93
Query: 680 GVIPASLGQLTRLQSLHLNNNKLTGNLPSSFQNLTSLETL----------------DLGN 723
            V PA+   L RL +LHL+   L    P  F+ L +L+ L                DLGN
Sbjct: 94  SVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGN 153
Query: 724 --------NRFSGNIPSLLGNGFVGLRILSLRSNAFSGEIPSKLSNLSSLQVLDLAENNL 775
                   NR S ++P     G   L  L L  N  +   P    +L  L  L L  NNL
Sbjct: 154 LTHLFLHGNRIS-SVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNL 212
Query: 776 TGSIPGSVGDLKAMAHVQ 793
           +     ++  L+A+ +++
Sbjct: 213 SALPTEALAPLRALQYLR 230

>pdb|1OZN|A Chain A, 1.5a Crystal Structure Of The Nogo Receptor Ligand Binding Domain Reveals A Convergent Recognition Scaffold Mediating Inhibition Of Myelination Length = 285

Iteration: 1
 Score = 44.7 bits (104), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 54/198 (27%), Positives = 79/198 (39%), Gaps = 28/198 (14%)
Query: 621 IFLSVSGNRLTGKIPGSIGEMQLLQVIDLSRNXXXXXXXXXXXNCTFLKVLDLS-YSSLS 679
           IFL   GNR++     S    + L ++ L  N               L+ LDLS  + L 
Sbjct: 37  IFLH--GNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLR 94
Query: 680 GVIPASLGQLTRLQSLHLNNNKLTGNLPSSFQNLTSLETL----------------DLGN 723
            V PA+   L RL +LHL+   L    P  F+ L +L+ L                DLGN
Sbjct: 95  SVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGN 154
Query: 724 --------NRFSGNIPSLLGNGFVGLRILSLRSNAFSGEIPSKLSNLSSLQVLDLAENNL 775
                   NR S ++P     G   L  L L  N  +   P    +L  L  L L  NNL
Sbjct: 155 LTHLFLHGNRIS-SVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNL 213
Query: 776 TGSIPGSVGDLKAMAHVQ 793
           +     ++  L+A+ +++
Sbjct: 214 SALPTEALAPLRALQYLR 231

>pdb|2OMY|A Chain A, Crystal Structure Of Inla S192n/hec1 Complex Length = 461

Iteration: 1
 Score = 44.3 bits (103), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 88/306 (28%), Positives = 143/306 (46%), Gaps = 47/306 (15%)
Query: 120 LENLQYLNLSEAGFTGVVPSSLGNLHRLQYFDVSAELFALSADSLDWLTGLVSLKHLAMN 179
           L NL  +N S    T + P  L NL +L   D+      ++ + +  +T L +L +L   
Sbjct: 62  LNNLTQINFSNNQLTDITP--LKNLTKL--VDI-----LMNNNQIADITPLANLTNLT-- 110
Query: 180 RVDLSLVGSEWLGI--LKNLPNLTELHLSVCGLTGSITSITPVN-LTSPAVLDLSLNHFN 236
              L+L  ++   I  LKNL NL  L LS    + +I+ I+ ++ LTS   L+   N   
Sbjct: 111 --GLTLFNNQITDIDPLKNLTNLNRLELS----SNTISDISALSGLTSLQQLNFG-NQVT 163
Query: 237 SLFPNWLVNISTLVYVDLSDCDLYGRIPIGFGELPNLQYLSLAGNNNLSGSCSQLFRGSW 296
            L P  L N++TL  +D+S  +    I +   +L NL+ L +A NN +S        G  
Sbjct: 164 DLKP--LANLTTLERLDIS-SNKVSDISV-LAKLTNLESL-IATNNQISDITP---LGIL 215
Query: 297 KKIQILNFASNKLHGKLPSSVANMTSLTNFDLFDKKVEGGIPSSIARLCYLKEFDLSGNN 356
             +  L+   N+L  K   ++A++T+LT+ DL + ++    P  ++ L  L E  L  N 
Sbjct: 216 TNLDELSLNGNQL--KDIGTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQ 271
Query: 357 LTGSLPEILQGTDLCVSSNSPLPSLISMRLGNNHLKGKLPEWLSQLENLVELTLSYNLLQ 416
           ++   P  L G          L +L ++ L  N L+   P  +S L+NL  LTL +N + 
Sbjct: 272 ISNISP--LAG----------LTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNIS 317
Query: 417 GPIPAS 422
              P S
Sbjct: 318 DISPVS 323

>pdb|3ZYN|A Chain A, Crystal Structure Of The N-Terminal Leucine Rich Repeats Of Netrin-G Ligand-3 Length = 321

Iteration: 1
 Score = 44.3 bits (103), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 47/178 (26%), Positives = 80/178 (44%), Gaps = 3/178 (1%)
Query: 613 ISGSMP-NLIFLSVSGNRLTGKIPGSIGEMQLLQVIDLSRNXXXXXXXXXXXNCTFLKVL 671
           +  S+P N  +L++  N +      +   ++ L+++ LS+N               L  L
Sbjct: 29  VPASIPVNTRYLNLQENSIQVIRTDTFKHLRHLEILQLSKNLVRKIEVGAFNGLPSLNTL 88
Query: 672 DLSYSSLSGVIPASLGQLTRLQSLHLNNNKLTGNLPSSFQNLTSLETLDLGNNRFSGNIP 731
           +L  + L+ V   +   L++L+ L L NN +      +F  + SL  LDLG  +    I 
Sbjct: 89  ELFDNRLTTVPTQAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLRRLDLGELKRLEYIS 148
Query: 732 SLLGNGFVGLRILSLRSNAFSGEIPSKLSNLSSLQVLDLAENNLTGSIPGSVGDLKAM 789
                G V LR L+L       +IP+ L+ L  L+ L+L+ N L    PGS   L ++
Sbjct: 149 EAAFEGLVNLRYLNLGMCNLK-DIPN-LTALVRLEELELSGNRLDLIRPGSFQGLTSL 204

>pdb|1O6S|A Chain A, Internalin (Listeria Monocytogenes) E-Cadherin (Human) Recognition Complex Length = 466

Iteration: 1
 Score = 43.9 bits (102), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 75/242 (30%), Positives = 115/242 (47%), Gaps = 38/242 (15%)
Query: 98  LEYLDLSFNTFNDIPIPEFLGSLENLQYLNLSEAGFTGVVPSSLGNLHRLQYFDVSAELF 157
           L  L+LS NT +DI     L SL+ L + N      T + P  L NL  L+  D+S+   
Sbjct: 136 LNRLELSSNTISDISALSGLTSLQQLSFGN----QVTDLKP--LANLTTLERLDISSNKV 189
Query: 158 ALSADSLDWLTGLVSLKH------------LAMNRVDLSLVGSEW--LGILKNLPNLTEL 203
           +     L  LT L SL              +  N  +LSL G++   +G L +L NLT+L
Sbjct: 190 S-DISVLAKLTNLESLIATNNQISDITPLGILTNLDELSLNGNQLKDIGTLASLTNLTDL 248
Query: 204 HLSVCGLTGSITSITPVN-LTSPAVLDLSLNHFNSLFPNWLVNISTLVYVDLSDCDLYGR 262
            L+       I+++ P++ LT    L L  N  +++ P  L  ++ L  ++L++  L   
Sbjct: 249 DLA----NNQISNLAPLSGLTKLTELKLGANQISNISP--LAGLTALTNLELNENQLEDI 302
Query: 263 IPIGFGELPNLQYLSLAGNNNLSGSCSQLF-RGSWKKIQILNFASNKLHGKLPSSVANMT 321
            PI    L NL YL+L  NN      S +    S  K+Q L F +NK+     SS+AN+T
Sbjct: 303 SPI--SNLKNLTYLTLYFNN-----ISDISPVSSLTKLQRLFFYNNKVSDV--SSLANLT 353
Query: 322 SL 323
           ++
Sbjct: 354 NI 355

>pdb|1O6S|A Chain A, Internalin (Listeria Monocytogenes) E-Cadherin (Human) Recognition Complex Length = 466

Iteration: 1
 Score = 43.5 bits (101), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 88/306 (28%), Positives = 142/306 (46%), Gaps = 47/306 (15%)
Query: 120 LENLQYLNLSEAGFTGVVPSSLGNLHRLQYFDVSAELFALSADSLDWLTGLVSLKHLAMN 179
           L NL  +N S    T + P  L NL +L   D+      ++ + +  +T L +L +L   
Sbjct: 67  LNNLTQINFSNNQLTDITP--LKNLTKL--VDI-----LMNNNQIADITPLANLTNLT-- 115
Query: 180 RVDLSLVGSEWLGI--LKNLPNLTELHLSVCGLTGSITSITPVN-LTSPAVLDLSLNHFN 236
              L+L  ++   I  LKNL NL  L LS    + +I+ I+ ++ LTS   L    N   
Sbjct: 116 --GLTLFNNQITDIDPLKNLTNLNRLELS----SNTISDISALSGLTSLQQLSFG-NQVT 168
Query: 237 SLFPNWLVNISTLVYVDLSDCDLYGRIPIGFGELPNLQYLSLAGNNNLSGSCSQLFRGSW 296
            L P  L N++TL  +D+S  +    I +   +L NL+ L +A NN +S        G  
Sbjct: 169 DLKP--LANLTTLERLDIS-SNKVSDISV-LAKLTNLESL-IATNNQISDITP---LGIL 220
Query: 297 KKIQILNFASNKLHGKLPSSVANMTSLTNFDLFDKKVEGGIPSSIARLCYLKEFDLSGNN 356
             +  L+   N+L  K   ++A++T+LT+ DL + ++    P  ++ L  L E  L  N 
Sbjct: 221 TNLDELSLNGNQL--KDIGTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQ 276
Query: 357 LTGSLPEILQGTDLCVSSNSPLPSLISMRLGNNHLKGKLPEWLSQLENLVELTLSYNLLQ 416
           ++   P  L G          L +L ++ L  N L+   P  +S L+NL  LTL +N + 
Sbjct: 277 ISNISP--LAG----------LTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNIS 322
Query: 417 GPIPAS 422
              P S
Sbjct: 323 DISPVS 328

>pdb|2ID5|A Chain A, Crystal Structure Of The Lingo-1 Ectodomain Length = 477

Iteration: 1
 Score = 43.9 bits (102), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 73/296 (24%), Positives = 122/296 (41%), Gaps = 20/296 (6%)
Query: 580 RSNLLEGPIPLPIVEIELLDLSNNHFSGPIPQNISGSMPNLIFLSVSGNRLTGKIPGSIG 639
           R   +  P  +P  E  LLDL  N     + Q+   S P+L  L ++ N ++   PG+  
Sbjct: 20  RKRFVAVPEGIP-TETRLLDLGKNRIKT-LNQDEFASFPHLEELELNENIVSAVEPGAFN 77
Query: 640 EMQLLQVIDLSRNXXXXXXXXXXXNCTFLKVLDLSYSSLSGVIPASLGQLTRLQSLHLNN 699
            +  L+ + L  N             + L  LD+S + +  ++      L  L+SL + +
Sbjct: 78  NLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGD 137
Query: 700 NKLTGNLPSSFQNLTSLETLDLGNNRFSGNIPSLLGNGFVGLRILSLRSNAFSGEIPSKL 759
           N L      +F  L SLE L L     + +IP+   +   GL +L LR    +       
Sbjct: 138 NDLVYISHRAFSGLNSLEQLTLEKCNLT-SIPTEALSHLHGLIVLRLRHLNINAIRDYSF 196
Query: 760 SNLSSLQVLDLAE---------NNLTG----SIPGSVGDLKAMAHVQNIVKYLLFGRYRG 806
             L  L+VL+++          N L G    S+  +  +L A+ ++   V++L++ R+  
Sbjct: 197 KRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLA--VRHLVYLRFLN 254
Query: 807 IYYEENLVINTKGSSKDTPRLFHFIDLSGNNLHGDFPTQLTKLVGLVVLNLSRNHI 862
           + Y  N +   +GS          I L G  L    P     L  L VLN+S N +
Sbjct: 255 LSY--NPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQL 308

>pdb|2Z64|A Chain A, Crystal Structure Of Mouse Tlr4 And Mouse Md-2 Complex Length = 599

Iteration: 1
 Score = 43.1 bits (100), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 64/222 (28%), Positives = 98/222 (44%), Gaps = 31/222 (13%)
Query: 91  SDSSGSLLEYLDLSFNTFNDIPIPEFLGSLENLQYLNLSEAGFTGVVP-SSLGNLHRLQY 149
           SD   + L +LDLSFN    I    F+G LE LQ+L+   +    V   S+  +L +L Y
Sbjct: 366 SDLGTNSLRHLDLSFNG-AIIMSANFMG-LEELQHLDFQHSTLKRVTEFSAFLSLEKLLY 423
Query: 150 FDVSAELFALSADSLDWLTGLVSLKHLAMNRVDLSLVGSEWLGILKNLPNLTELHLSVC- 208
            D+S     +  D +    GL SL  L M     S   +    +  N  NLT L LS C 
Sbjct: 424 LDISYTNTKIDFDGI--FLGLTSLNTLKM--AGNSFKDNTLSNVFANTTNLTFLDLSKCQ 479
Query: 209 ------GLTGSITSITPVNLTSPAVLDLSLNHFNSLFPNWLVNISTLVYVDLSDCDLYGR 262
                 G+  ++  +  +N++   +L L  +H+N L+     ++STL      DC  + R
Sbjct: 480 LEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLY-----SLSTL------DCS-FNR 527
Query: 263 IPIGFGELPN----LQYLSLAGNNNLSGSCSQLFRGSWKKIQ 300
           I    G L +    L + +L  NN+++  C       W K Q
Sbjct: 528 IETSKGILQHFPKSLAFFNLT-NNSVACICEHQKFLQWVKEQ 568

>pdb|3ZYO|A Chain A, Crystal Structure Of The N-Terminal Leucine Rich Repeats And Immunoglobulin Domain Of Netrin-G Ligand-3 Length = 411

Iteration: 1
 Score = 43.1 bits (100), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 47/178 (26%), Positives = 80/178 (44%), Gaps = 3/178 (1%)
Query: 613 ISGSMP-NLIFLSVSGNRLTGKIPGSIGEMQLLQVIDLSRNXXXXXXXXXXXNCTFLKVL 671
           +  S+P N  +L++  N +      +   ++ L+++ LS+N               L  L
Sbjct: 29  VPASIPVNTRYLNLQENSIQVIRTDTFKHLRHLEILQLSKNLVRKIEVGAFNGLPSLNTL 88
Query: 672 DLSYSSLSGVIPASLGQLTRLQSLHLNNNKLTGNLPSSFQNLTSLETLDLGNNRFSGNIP 731
           +L  + L+ V   +   L++L+ L L NN +      +F  + SL  LDLG  +    I 
Sbjct: 89  ELFDNRLTTVPTQAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLRRLDLGELKRLEYIS 148
Query: 732 SLLGNGFVGLRILSLRSNAFSGEIPSKLSNLSSLQVLDLAENNLTGSIPGSVGDLKAM 789
                G V LR L+L       +IP+ L+ L  L+ L+L+ N L    PGS   L ++
Sbjct: 149 EAAFEGLVNLRYLNLGMCNLK-DIPN-LTALVRLEELELSGNRLDLIRPGSFQGLTSL 204

>pdb|3VQ1|A Chain A, Crystal Structure Of Mouse Tlr4MD-2LIPID IVA COMPLEX Length = 606

Iteration: 1
 Score = 43.1 bits (100), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 64/222 (28%), Positives = 98/222 (44%), Gaps = 31/222 (13%)
Query: 91  SDSSGSLLEYLDLSFNTFNDIPIPEFLGSLENLQYLNLSEAGFTGVVP-SSLGNLHRLQY 149
           SD   + L +LDLSFN    I    F+G LE LQ+L+   +    V   S+  +L +L Y
Sbjct: 371 SDLGTNSLRHLDLSFNG-AIIMSANFMG-LEELQHLDFQHSTLKRVTEFSAFLSLEKLLY 428
Query: 150 FDVSAELFALSADSLDWLTGLVSLKHLAMNRVDLSLVGSEWLGILKNLPNLTELHLSVC- 208
            D+S     +  D +    GL SL  L M     S   +    +  N  NLT L LS C 
Sbjct: 429 LDISYTNTKIDFDGI--FLGLTSLNTLKM--AGNSFKDNTLSNVFANTTNLTFLDLSKCQ 484
Query: 209 ------GLTGSITSITPVNLTSPAVLDLSLNHFNSLFPNWLVNISTLVYVDLSDCDLYGR 262
                 G+  ++  +  +N++   +L L  +H+N L+     ++STL      DC  + R
Sbjct: 485 LEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLY-----SLSTL------DCS-FNR 532
Query: 263 IPIGFGELPN----LQYLSLAGNNNLSGSCSQLFRGSWKKIQ 300
           I    G L +    L + +L  NN+++  C       W K Q
Sbjct: 533 IETSKGILQHFPKSLAFFNLT-NNSVACICEHQKFLQWVKEQ 573

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	1009
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	0.0
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	5e-93
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	8e-90
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	1e-87
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	2e-86
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	7e-80
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	4e-49
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	2e-23
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	7e-21
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	3e-81
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	6e-60
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	2e-54
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	1e-53
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	2e-49
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	1e-46
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	1e-44
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	1e-32
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	7e-81
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	1e-74
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	4e-74
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	7e-74
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	5e-59
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	3e-52
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	2e-45
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	8e-42
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	5e-26
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	5e-18
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	3e-80
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	4e-77
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	1e-71
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	5e-47
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	2e-46
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	4e-46
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	2e-22
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	3e-75
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	2e-69
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	3e-69
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	2e-67
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	2e-66
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	1e-49
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	9e-30
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	1e-68
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	9e-68
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	1e-60
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	5e-60
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	3e-56
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	8e-28
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	4e-66
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	2e-63
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	6e-61
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	7e-61
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	1e-57
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	2e-43
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	9e-40
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	1e-38
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	2e-22
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	5e-52
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	5e-49
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	2e-45
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	3e-37
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	7e-27
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	1e-14
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	1e-50
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	1e-49
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	2e-44
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	3e-40
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	3e-38
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	3e-30
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	7e-27
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	1e-16
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	1e-15
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	2e-44
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	4e-43
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	2e-42
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	6e-38
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	3e-34
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	3e-29
1o6v_A	466	Internalin A; bacterial infection, extracellular r	3e-44
1o6v_A	466	Internalin A; bacterial infection, extracellular r	2e-39
1o6v_A	466	Internalin A; bacterial infection, extracellular r	7e-39
1o6v_A	466	Internalin A; bacterial infection, extracellular r	1e-35
1o6v_A	466	Internalin A; bacterial infection, extracellular r	2e-33
1o6v_A	466	Internalin A; bacterial infection, extracellular r	1e-32
1o6v_A	466	Internalin A; bacterial infection, extracellular r	2e-30
1o6v_A	466	Internalin A; bacterial infection, extracellular r	2e-11
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	7e-40
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	4e-39
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	1e-36
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	7e-36
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	4e-35
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	4e-35
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	5e-33
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	6e-32
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	2e-29
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	2e-20
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	2e-15
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	4e-09
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	3e-07
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	2e-38
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	2e-37
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	7e-36
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	3e-33
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	2e-25
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	1e-21
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	2e-16
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	9e-13
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	2e-36
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	1e-34
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	5e-34
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	8e-34
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	3e-33
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	8e-31
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	1e-29
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	2e-14
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	3e-14
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	3e-36
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	7e-34
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	3e-29
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	6e-29
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	2e-25
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	3e-21
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	2e-11
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	1e-06
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	6e-36
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	1e-30
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	3e-30
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	7e-30
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	9e-29
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	1e-25
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	8e-25
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	6e-24
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	1e-23
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	1e-18
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	4e-35
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	9e-34
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	6e-28
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	3e-27
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	7e-27
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	7e-23
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	1e-18
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	3e-18
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	3e-15
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	2e-04
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	8e-35
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	6e-32
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	9e-32
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	2e-31
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	6e-30
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	3e-27
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	2e-19
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	2e-34
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	9e-32
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	2e-31
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	5e-27
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	2e-23
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	2e-22
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	6e-22
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	3e-13
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	1e-12
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	2e-06
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	3e-34
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	2e-33
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	5e-30
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	3e-29
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	4e-26
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	2e-18
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	5e-34
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	2e-31
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	3e-26
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	5e-23
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	1e-18
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	9e-18
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	6e-08
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	7e-06
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	1e-33
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	1e-28
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	1e-27
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	9e-27
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	2e-26
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	3e-23
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	2e-19
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	3e-16
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	3e-14
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	3e-11
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	7e-32
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	3e-31
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	8e-29
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	1e-26
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	1e-25
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	5e-23
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	4e-18
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	1e-15
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	3e-28
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	1e-26
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	1e-25
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	5e-23
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	1e-18
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	2e-18
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	2e-16
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	4e-13
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	4e-13
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	3e-28
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	2e-25
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	2e-23
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	8e-20
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	4e-17
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	2e-16
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	2e-15
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	3e-15
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	4e-13
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	1e-27
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	8e-25
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	8e-25
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	4e-23
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	2e-21
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	2e-21
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	1e-17
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	2e-13
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	2e-27
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	7e-21
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	2e-19
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	6e-19
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	1e-18
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	2e-16
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	8e-16
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	9e-16
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	4e-05
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	2e-27
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	4e-26
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	2e-25
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	2e-20
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	8e-19
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	4e-17
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	2e-16
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	2e-16
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	2e-11
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	6e-27
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	1e-23
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	7e-22
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	4e-21
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	5e-21
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	3e-19
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	1e-18
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	6e-17
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	2e-11
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	6e-11
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	5e-04
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	8e-27
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	2e-25
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	4e-25
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	4e-19
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	4e-18
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	1e-16
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	2e-15
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	2e-11
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	4e-25
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	1e-22
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	2e-22
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	5e-22
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	9e-19
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	8e-17
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	4e-10
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	7e-25
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	1e-18
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	2e-18
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	6e-18
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	9e-18
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	4e-17
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	1e-15
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	3e-12
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	2e-22
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	2e-20
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	2e-19
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	3e-19
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	2e-16
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	2e-15
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	2e-13
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	2e-12
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	5e-12
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	5e-08
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	3e-21
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	4e-20
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	1e-19
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	9e-19
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	2e-18
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	9e-15
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	2e-09
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	8e-21
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	1e-17
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	1e-14
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	1e-14
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	3e-14
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	2e-13
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	8e-13
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	3e-10
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	4e-10
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	2e-09
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	4e-09
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	2e-08
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	2e-06
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	1e-05
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	9e-21
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	2e-16
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	3e-14
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	4e-13
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	2e-12
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	1e-19
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	2e-15
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	5e-14
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	2e-13
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	1e-09
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	2e-07
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	2e-06
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	3e-06
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	1e-18
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	1e-16
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	5e-14
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	5e-13
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	1e-12
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	5e-12
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	1e-09
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	8e-05
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	2e-18
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	5e-16
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	7e-14
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	8e-12
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	3e-11
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	7e-11
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	2e-08
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	7e-05
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	2e-18
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	3e-15
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	6e-15
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	3e-13
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	4e-13
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	2e-12
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	2e-12
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	5e-12
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	5e-06
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	8e-06
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	2e-18
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	2e-17
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	3e-15
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	5e-15
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	5e-15
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	3e-11
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	4e-11
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	2e-10
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	6e-09
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	7e-18
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	2e-17
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	6e-17
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	3e-15
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	9e-15
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	2e-12
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	4e-17
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	2e-14
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	9e-14
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	1e-12
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	1e-07
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	6e-07
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	3e-06
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	1e-05
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	1e-04
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	2e-15
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	9e-14
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	5e-13
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	3e-12
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	3e-10
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	7e-09
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	1e-08
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	4e-07
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	7e-15
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	2e-14
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	5e-12
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	2e-11
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	3e-05
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	4e-05
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	7e-15
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	1e-12
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	1e-12
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	3e-11
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	1e-05
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	4e-05
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	2e-04
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	9e-15
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	2e-14
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	7e-14
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	9e-14
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	9e-13
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	1e-11
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	3e-10
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	3e-09
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	6e-09
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	5e-07
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	2e-04
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	2e-14
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	8e-13
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	2e-12
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	4e-10
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	1e-05
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	3e-05
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	5e-05
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	1e-13
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	5e-11
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	7e-07
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	1e-06
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	2e-05
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	2e-04
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	3e-13
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	1e-12
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	5e-09
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	2e-07
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	9e-07
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	9e-07
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	7e-06
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	1e-05
3m19_A	251	Variable lymphocyte receptor A diversity region; a	6e-12
3m19_A	251	Variable lymphocyte receptor A diversity region; a	4e-11
3m19_A	251	Variable lymphocyte receptor A diversity region; a	7e-11
3m19_A	251	Variable lymphocyte receptor A diversity region; a	5e-07
3m19_A	251	Variable lymphocyte receptor A diversity region; a	7e-06
3m19_A	251	Variable lymphocyte receptor A diversity region; a	7e-05
3m19_A	251	Variable lymphocyte receptor A diversity region; a	1e-04
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	9e-12
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	3e-11
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	5e-11
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	6e-11
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	3e-10
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	4e-08
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	2e-06
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	2e-06
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	1e-05
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	3e-11
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	5e-11
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	1e-09
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	3e-08
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	1e-07
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	5e-07
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	1e-06
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	5e-05
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	6e-05
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	6e-11
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	2e-10
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	1e-05
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	2e-05
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	2e-04
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	7e-11
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	9e-11
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	2e-08
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	1e-06
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	4e-05
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	3e-04
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	1e-10
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	4e-10
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	9e-09
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	3e-08
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	3e-07
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	3e-07
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	3e-05
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	2e-04
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	1e-10
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	2e-07
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	6e-07
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	3e-06
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	6e-05
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	5e-04
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	8e-04
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-10
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-07
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	9e-07
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	7e-04
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	4e-10
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	1e-07
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	2e-07
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	4e-07
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	3e-05
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	2e-09
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	4e-09
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	1e-08
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	5e-06
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	2e-05
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	1e-04
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	2e-04
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	2e-09
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	6e-07
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	4e-06
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	3e-09
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	4e-08
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	5e-06
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	4e-04
3e6j_A	229	Variable lymphocyte receptor diversity region; var	6e-09
3e6j_A	229	Variable lymphocyte receptor diversity region; var	1e-07
3e6j_A	229	Variable lymphocyte receptor diversity region; var	2e-06
3e6j_A	229	Variable lymphocyte receptor diversity region; var	1e-05
3e6j_A	229	Variable lymphocyte receptor diversity region; var	2e-04
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	2e-08
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	4e-08
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	6e-07
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	1e-06
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	4e-06
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	2e-04
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	3e-08
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	4e-06
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	9e-06
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	1e-04
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	2e-07
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	8e-07
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	3e-05
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	3e-07
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	2e-06
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	8e-07
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	1e-06
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	3e-05
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	5e-05
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	1e-04
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	3e-04
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	4e-04
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	4e-06
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	1e-05
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	5e-05
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	3e-04
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	7e-05
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	9e-05
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	7e-04
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	5e-04

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  573 bits (1479), Expect = 0.0
 Identities = 232/926 (25%), Positives = 342/926 (36%), Gaps = 185/926 (19%)

Query: 30  SNCSENDLDALIDFKNGLEDPESRLASWK-GSNCCQWHGISCDDDTGAIVAINLGNPYHV 88
           S     ++  LI FK+ L D  + L  W    N C + G++C      + +I+L +    
Sbjct: 7   SQSLYREIHQLISFKDVLPDK-NLLPDWSSNKNPCTFDGVTCR--DDKVTSIDLSS---- 59

Query: 89  VNSDSSGSLLEYLDLSFNTFNDIPIPEFLGSLENLQYLNLSEAGFTGVVPSSLGNLHRLQ 148
                                   +   L SL  L+ L LS +   G V         L 
Sbjct: 60  ---------------KPLNVGFSAVSSSLLSLTGLESLFLSNSHINGSVSG-FKCSASLT 103

Query: 149 YFDVSAELFALSADSLDWLTGLVSLKHLAMNRVDLSLVGSEWLGILKNLPNLTELHLSVC 208
             D+S    +    +L  L                            +   L  L++S  
Sbjct: 104 SLDLSRNSLSGPVTTLTSLG---------------------------SCSGLKFLNVSSN 136

Query: 209 GLTGSITSITPVNLTSPAVLDLSLNHFNSLFPNWLV---NISTLVYVDLSDCDLYGRIPI 265
            L         + L S  VLDLS N  +       V       L ++ +S   + G + +
Sbjct: 137 TLDFPGKVSGGLKLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGDVDV 196

Query: 266 GFGELPNLQYLSLAGNNNLSGSCSQLFRGSWKKIQILNFASNKLHGKLPSSVANMTSLTN 325
                 NL++L ++ NN                              +P  + + ++L +
Sbjct: 197 S--RCVNLEFLDVSSNN--------------------------FSTGIPF-LGDCSALQH 227

Query: 326 FDLFDKKVEGGIPSSIARLCYLKEFDLSGNNLTGSLPEILQGTDLCVSSNSPLPSLISMR 385
            D+   K+ G    +I+    LK  ++S N   G +P              PL SL  + 
Sbjct: 228 LDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPP------------LPLKSLQYLS 275

Query: 386 LGNNHLKGKLPEWLS-QLENLVELTLSYNLLQGPIPASLGNLKNLTKLNLPGNQLNGTLP 444
           L  N   G++P++LS   + L  L LS N   G +P   G+   L  L L  N  +G LP
Sbjct: 276 LAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELP 335

Query: 445 -ETLGSLPELSVLDVSSNSLTGIISEIHFSRLSKLKFLGLSSNSFILNVSSSWIPPFQVQ 503
            +TL  +  L VLD+S N  +G + E   +  + L  L LSSN+F     S  I P    
Sbjct: 336 MDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNF-----SGPILP---- 386

Query: 504 SLNMRSCQLGPSFPSWLKTQQGVSFLDFSNASISGPIPNWFWDISSKLSLLNVSLNQLQG 563
                   L  +  + L        L   N   +G IP    + S  L  L++S N L G
Sbjct: 387 -------NLCQNPKNTL------QELYLQNNGFTGKIPPTLSNCSE-LVSLHLSFNYLSG 432

Query: 564 QLPNPLNIAPFADVDFRSNLLEGPIPLPIVEIELLDLSNNHFSGPIPQNISGSMPNLIFL 623
            +P+ L           S L              L L  N   G IPQ +   +  L  L
Sbjct: 433 TIPSSLG--------SLSKL------------RDLKLWLNMLEGEIPQEL-MYVKTLETL 471

Query: 624 SVSGNRLTGKIPGSIGEMQLLQVIDLSRNSISGSISSSIGNCTFLKVLDLSYSSLSGVIP 683
            +  N LTG+IP  +     L  I LS N ++G I   IG    L +L LS +S SG IP
Sbjct: 472 ILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIP 531

Query: 684 ASLGQLTRLQSLHLNNNKLTGNLPSSFQNLTSLETLDLGNNRFSGNIPSLLGN-GFVGLR 742
           A LG    L  L LN N   G +P++    +      +  N  +G     + N G     
Sbjct: 532 AELGDCRSLIWLDLNTNLFNGTIPAAMFKQS----GKIAANFIAGKRYVYIKNDGMKKEC 587

Query: 743 ILSLRSNAFSGEIPSKLSNLSSLQVLDLAENNLTGSIPGSVGDLKAMAHVQNIVKYLLFG 802
             +     F G    +L+ LS+    ++      G    +  +  +M             
Sbjct: 588 HGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSM------------- 634

Query: 803 RYRGIYYEENLVINTKGSSKDTPRLFHFIDLSGNNLHGDFPTQLTKLVGLVVLNLSRNHI 862
                                      F+D+S N L G  P ++  +  L +LNL  N I
Sbjct: 635 --------------------------MFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDI 668

Query: 863 GGQIPENISGLHQLASLDLSSNNLSGGIPSSLSSLSFLGYINLSRNQLSGKIPFEGHMTT 922
            G IP+ +  L  L  LDLSSN L G IP ++S+L+ L  I+LS N LSG IP  G   T
Sbjct: 669 SGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPEMGQFET 728

Query: 923 FDASSFAGNPGLCGDPLPVKCQDDES 948
           F  + F  NPGLCG PLP     +  
Sbjct: 729 FPPAKFLNNPGLCGYPLPRCDPSNAD 754

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  309 bits (794), Expect = 5e-93
 Identities = 158/734 (21%), Positives = 250/734 (34%), Gaps = 114/734 (15%)

Query: 199 NLTELHLSVCGLTGSITSITPVNLTSPAVLDLSLNHFNSLFPNWLVNISTLVYVDLSDCD 258
           +      S   LT  +    P N+T    L+L+ N    L        S L  +D+    
Sbjct: 5   SHEVADCSHLKLT-QVPDDLPTNITV---LNLTHNQLRRLPAANFTRYSQLTSLDVGFNT 60

Query: 259 LYGRIPIGFGELPNLQYLSLAGNNNLSGSCSQLFRGSWKKIQILNFASNKLHGKLPSSVA 318
           +    P    +LP L+ L+L  +N LS    + F      +  L+  SN +     +   
Sbjct: 61  ISKLEPELCQKLPMLKVLNLQ-HNELSQLSDKTFAFC-TNLTELHLMSNSIQKIKNNPFV 118

Query: 319 NMTSLTNFDLFDKKVEGGIPSSIARLCYLKEFDLSGNNLTGSLPEILQGTDLCVSSNSPL 378
              +L   DL    +      +  +L  L+E  LS N +     E L             
Sbjct: 119 KQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEEL--------DIFAN 170

Query: 379 PSLISMRLGNNHLKGKLPEWLSQLENLVELTLSYNLLQGPIPASLG---NLKNLTKLNLP 435
            SL  + L +N +K   P     +  L  L L+   L   +   L       ++  L+L 
Sbjct: 171 SSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLS 230

Query: 436 GNQLNGTLPETLGSL--PELSVLDVSSNSLTGIISEIHFSRLSKLKFLGLSSNSFILNVS 493
            +QL+ T   T   L    L++LD+S N+L  + ++  F+ L +L++  L  N+     S
Sbjct: 231 NSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDS-FAWLPQLEYFFLEYNNIQHLFS 289

Query: 494 SSWIPPFQVQSLNMRSCQLGPSFPSWLKTQQGVSFLDFSNASISGPIPNWFWDISSKLSL 553
            S    F V+ LN++                       S AS+       F  +   L  
Sbjct: 290 HSLHGLFNVRYLNLKRSFT---------------KQSISLASLPKIDDFSFQWLKC-LEH 333

Query: 554 LNVSLNQLQGQLPNPLNIAPFADVDFRSNLLEGPIPLPIVEIELLDLSNNHFSGPIPQN- 612
           LN+  N + G       I         +             ++ L LSN+  S     N 
Sbjct: 334 LNMEDNDIPG-------IKSNMFTGLIN-------------LKYLSLSNSFTSLRTLTNE 373

Query: 613 --ISGSMPNLIFLSVSGNRLTGKIPGSIGEMQLLQVIDLSRNSISGSIS-SSIGNCTFLK 669
             +S +   L  L+++ N+++     +   +  L+V+DL  N I   ++         + 
Sbjct: 374 TFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIF 433

Query: 670 VLDLSYSSLSGVIPASLGQLTRLQSLHLNNNKLTG--NLPSSFQNLTSLETLDLGNNRFS 727
            + LSY+    +   S   +  LQ L L    L    + PS FQ L +L  LDL NN  +
Sbjct: 434 EIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIA 493

Query: 728 GNIPSLLGNGFVGLRILSLRSN--------AFSGEIPSKLSNLSSLQVLDLAENNLTGSI 779
                +L      L IL L+ N        A  G     L  LS L +L+L  N      
Sbjct: 494 NINDDMLEG-LEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIP 552

Query: 780 PGSVGDLKAMAHVQNIVKYLLFGRYRGIYYEENLVINTKGSSKDTPRLFHFIDLSGNNLH 839
                DL                          L I               IDL  NNL+
Sbjct: 553 VEVFKDLF------------------------ELKI---------------IDLGLNNLN 573

Query: 840 GDFPTQLTKLVGLVVLNLSRNHIGGQIPENIS-GLHQLASLDLSSNNLSGGIPSSLSSLS 898
               +     V L  LNL +N I     +        L  LD+  N          S   
Sbjct: 574 TLPASVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTELDMRFNPFDCTCE---SIAW 630

Query: 899 FLGYINLSRNQLSG 912
           F+ +IN +   +  
Sbjct: 631 FVNWINETHTNIPE 644

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  300 bits (771), Expect = 8e-90
 Identities = 133/712 (18%), Positives = 230/712 (32%), Gaps = 133/712 (18%)

Query: 98  LEYLDLSFNTFNDIPIPEFLGSLENLQYLNLSEAGFTGVVPSSLGNLHRLQYFDVSAELF 157
            E  D S      +P         N+  LNL+      +  ++     +L   D      
Sbjct: 6   HEVADCSHLKLTQVP----DDLPTNITVLNLTHNQLRRLPAANFTRYSQLTSLD------ 55

Query: 158 ALSADSLDWLTGLVSLKHLAMNRVDLSLVGSEWLGILKNLPNLTELHLSVCGLTGSITSI 217
            +  +++  L                         + + LP L  L+L    L+      
Sbjct: 56  -VGFNTISKLEP----------------------ELCQKLPMLKVLNLQHNELSQLSDK- 91

Query: 218 TPVNLTSPAVLDLSLNHFNSLFPNWLVNISTLVYVDLSDCDLYGRIPIGFGELPNLQYLS 277
           T    T+   L L  N    +  N  V    L+ +DLS   L         +L NLQ L 
Sbjct: 92  TFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELL 151

Query: 278 LAGNNNLSGSCSQLFR-GSWKKIQILNFASNKLHGKLPSSVANMTSLTNFDLFDKKVEGG 336
           L+ NN +    S+     +   ++ L  +SN++    P     +  L    L + ++   
Sbjct: 152 LS-NNKIQALKSEELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPS 210

Query: 337 IPSSIA---RLCYLKEFDLSGNNLTGSLPEILQGTDLCVSSNSPLPSLISMRLGNNHLKG 393
           +   +        ++   LS + L+ +                   +L  + L  N+L  
Sbjct: 211 LTEKLCLELANTSIRNLSLSNSQLSTTSNTTFL--------GLKWTNLTMLDLSYNNLNV 262

Query: 394 KLPEWLSQLENLVELTLSYNLLQGPIPASLGNLKNLTKLNLPGNQLNGTL---------P 444
              +  + L  L    L YN +Q     SL  L N+  LNL  +    ++          
Sbjct: 263 VGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDD 322

Query: 445 ETLGSLPELSVLDVSSNSLTGIISEIHFSRLSKLKFLGLSSNSFILNVSSSWIPPFQVQS 504
            +   L  L  L++  N + GI S + F+ L  LK+L LS++      S   +      S
Sbjct: 323 FSFQWLKCLEHLNMEDNDIPGIKSNM-FTGLINLKYLSLSNS----FTSLRTLTNETFVS 377

Query: 505 LNMRSCQLGPSFPSWLKTQQGVSFLDFSNASISGPIPNWFWDISSKLSLLNVSLNQLQGQ 564
           L                       L+ +   IS    + F             L  L+  
Sbjct: 378 LAHSPLH----------------ILNLTKNKISKIESDAFS-----------WLGHLEV- 409

Query: 565 LPNPLNIAPFADVDFRSNLLEGPIPLPIVEIELLDLSNNHFSGPIPQNISGSMPNLIFLS 624
                                            LDL  N     +       + N+  + 
Sbjct: 410 ---------------------------------LDLGLNEIGQELTGQEWRGLENIFEIY 436

Query: 625 VSGNRLTGKIPGSIGEMQLLQVIDLSRNSISG--SISSSIGNCTFLKVLDLSYSSLSGVI 682
           +S N+       S   +  LQ + L R ++    S  S       L +LDLS ++++ + 
Sbjct: 437 LSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANIN 496

Query: 683 PASLGQLTRLQSLHLNNNKLT--------GNLPSSFQNLTSLETLDLGNNRFSGNIPSLL 734
              L  L +L+ L L +N L         G      + L+ L  L+L +N F      + 
Sbjct: 497 DDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVF 556

Query: 735 GNGFVGLRILSLRSNAFSGEIPSKLSNLSSLQVLDLAENNLTGSIPGSVGDL 786
            +    L+I+ L  N  +    S  +N  SL+ L+L +N +T       G  
Sbjct: 557 KD-LFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVFGPA 607

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  295 bits (757), Expect = 1e-87
 Identities = 125/692 (18%), Positives = 238/692 (34%), Gaps = 101/692 (14%)

Query: 272 NLQYLSLAGNNNLSGSCSQLFRGSWKKIQILNFASNKLHGKLPSSVANMTSLTNFDLFDK 331
           + +      +  L+     L       I +LN   N+L     ++    + LT+ D+   
Sbjct: 5   SHEVADC-SHLKLTQVPDDLPTN----ITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFN 59

Query: 332 KVEGGIPSSIARLCYLKEFDLSGNNLTGSLPEILQGTDLCVSSNSPLPSLISMRLGNNHL 391
            +    P    +L  LK  +L  N L+    +                +L  + L +N +
Sbjct: 60  TISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAF----------CTNLTELHLMSNSI 109

Query: 392 KGKLPEWLSQLENLVELTLSYNLLQGPIPASLGNLKNLTKLNLPGNQLNGTLPETLGSL- 450
           +        + +NL+ L LS+N L      +   L+NL +L L  N++     E L    
Sbjct: 110 QKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFA 169

Query: 451 -PELSVLDVSSNSLTGIISEIHFSRLSKLKFLGLSSNSFILNVSSSWIPPF---QVQSLN 506
              L  L++SSN +        F  + +L  L L++     +++           +++L+
Sbjct: 170 NSSLKKLELSSNQIKEFSPGC-FHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLS 228

Query: 507 MRSCQLGPSFPSWLKTQQGVS--FLDFSNASISGPIPNWFWDISSKLSLLNVSLNQLQGQ 564
           + + QL  +  +     +  +   LD S  +++    + F  +   L    +  N +Q  
Sbjct: 229 LSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQ-LEYFFLEYNNIQHL 287

Query: 565 LPNPL-NIAPFADVDFRSNLLEGPIPLPIVEIELLDLSNNHFSGPIPQNISGSMPNLIFL 623
             + L  +     ++ + +  +              +S          +    +  L  L
Sbjct: 288 FSHSLHGLFNVRYLNLKRSFTK------------QSISLASLPKIDDFSFQW-LKCLEHL 334

Query: 624 SVSGNRLTGKIPGSIGEMQLLQVIDLSRNSISGSISSSIGNCTF-------LKVLDLSYS 676
           ++  N + G        +  L+ + LS +  S     ++ N TF       L +L+L+ +
Sbjct: 335 NMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLR---TLTNETFVSLAHSPLHILNLTKN 391

Query: 677 SLSGVIPASLGQLTRLQSLHLNNNKLTGNLP-SSFQNLTSLETLDLGNNRFSGNIPSLLG 735
            +S +   +   L  L+ L L  N++   L    ++ L ++  + L  N++     +   
Sbjct: 392 KISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFA 451

Query: 736 NGFVGLRILSLRSNAFSG--EIPSKLSNLSSLQVLDLAENNLTGSIPGSVGDLKAMAHVQ 793
                L+ L LR  A       PS    L +L +LDL+ NN+       +  L+ +    
Sbjct: 452 L-VPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKL---- 506

Query: 794 NIVKYLLFGRYRGIYYEENLVINTKGSSKDTPRLFHFIDLSGNNLH--------GDFPTQ 845
                                                +DL  NNL         G     
Sbjct: 507 -----------------------------------EILDLQHNNLARLWKHANPGGPIYF 531

Query: 846 LTKLVGLVVLNLSRNHIGGQIPENISGLHQLASLDLSSNNLSGGIPSSLSSLSFLGYINL 905
           L  L  L +LNL  N       E    L +L  +DL  NNL+    S  ++   L  +NL
Sbjct: 532 LKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNL 591

Query: 906 SRNQLSGKIP--FEGHMTTFDASSFAGNPGLC 935
            +N ++      F              NP  C
Sbjct: 592 QKNLITSVEKKVFGPAFRNLTELDMRFNPFDC 623

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  291 bits (748), Expect = 2e-86
 Identities = 137/684 (20%), Positives = 245/684 (35%), Gaps = 87/684 (12%)

Query: 122 NLQYLNLSEAGFTGVVPSSLGNLHRLQYFDVSA-ELFALSADSLDWLTGLVSLKHLAMNR 180
           + +  + S    T V      N+  L   +++  +L  L A +    T    L  L +  
Sbjct: 5   SHEVADCSHLKLTQVPDDLPTNITVL---NLTHNQLRRLPAAN---FTRYSQLTSLDVGF 58

Query: 181 VDLSLVGSEWLGILKNLPNLTELHLSVCGLTGSITSITPVNLTSPAVLDLSLNHFNSLFP 240
             +S +      + + LP L  L+L    L+      T    T+   L L  N    +  
Sbjct: 59  NTISKLEP---ELCQKLPMLKVLNLQHNELSQLSDK-TFAFCTNLTELHLMSNSIQKIKN 114

Query: 241 NWLVNISTLVYVDLSDCDLYGRIPIGFGELPNLQYLSLAGNNNLSGSCSQLFR-GSWKKI 299
           N  V    L+ +DLS   L         +L NLQ L L+ NN +    S+     +   +
Sbjct: 115 NPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLS-NNKIQALKSEELDIFANSSL 173

Query: 300 QILNFASNKLHGKLPSSVANMTSLTNFDLFDKKVEGGIPSSIA---RLCYLKEFDLSGNN 356
           + L  +SN++    P     +  L    L + ++   +   +        ++   LS + 
Sbjct: 174 KKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQ 233

Query: 357 LTGSLPEILQGTDLCVSSNSPLPSLISMRLGNNHLKGKLPEWLSQLENLVELTLSYNLLQ 416
           L+ +                   +L  + L  N+L     +  + L  L    L YN +Q
Sbjct: 234 LSTTSNTTFL--------GLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQ 285

Query: 417 GPIPASLGNLKNLTKLNLPGNQLNGTL---------PETLGSLPELSVLDVSSNSLTGII 467
                SL  L N+  LNL  +    ++           +   L  L  L++  N + GI 
Sbjct: 286 HLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIK 345

Query: 468 SEIHFSRLSKLKFLGLSSNSFILNVSSSWIPPFQVQSLNMRSCQLGPSFPSWLKTQQGVS 527
           S + F+ L  LK+L LS++      S   +      SL                      
Sbjct: 346 SNM-FTGLINLKYLSLSNS----FTSLRTLTNETFVSLAHSPLH---------------- 384

Query: 528 FLDFSNASISGPIPNWFWDISSKLSLLNVSLNQLQGQLPNPLNIAPFADVDFRSNLLEGP 587
            L+ +   IS    + F  +   L +L++ LN++  +L                    G 
Sbjct: 385 ILNLTKNKISKIESDAFSWLGH-LEVLDLGLNEIGQELT-------------------GQ 424

Query: 588 IPLPIVEIELLDLSNNHFSGPIPQNISGSMPNLIFLSVSGNRLTG--KIPGSIGEMQLLQ 645
               +  I  + LS N +      + +  +P+L  L +    L      P     ++ L 
Sbjct: 425 EWRGLENIFEIYLSYNKYLQLTRNSFAL-VPSLQRLMLRRVALKNVDSSPSPFQPLRNLT 483

Query: 646 VIDLSRNSISGSISSSIGNCTFLKVLDLSYSSLS--------GVIPASLGQLTRLQSLHL 697
           ++DLS N+I+      +     L++LDL +++L+        G     L  L+ L  L+L
Sbjct: 484 ILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNL 543

Query: 698 NNNKLTGNLPSSFQNLTSLETLDLGNNRFSGNIPSLLGNGFVGLRILSLRSNAFSGEIPS 757
            +N         F++L  L+ +DLG N  +    S+  N  V L+ L+L+ N  +     
Sbjct: 544 ESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNN-QVSLKSLNLQKNLITSVEKK 602

Query: 758 KLS-NLSSLQVLDLAENNLTGSIP 780
                  +L  LD+  N    +  
Sbjct: 603 VFGPAFRNLTELDMRFNPFDCTCE 626

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  273 bits (700), Expect = 7e-80
 Identities = 137/700 (19%), Positives = 236/700 (33%), Gaps = 108/700 (15%)

Query: 96  SLLEYLDLSFNTFNDIPIPEFLGSLENLQYLNLSEAGFTGVVPSSLGNLHRLQYFDVSA- 154
           S L  LD+ FNT + +  PE    L  L+ LNL     + +   +      L    + + 
Sbjct: 49  SQLTSLDVGFNTISKLE-PELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSN 107

Query: 155 ELFALSADSLDWLTGLVSLKHLAMNRVDLSLVGSEWLGILKNLPNLTELHLSVCGLTGSI 214
            +  +  +       L++L  L+ N   LS            L NL EL LS   +    
Sbjct: 108 SIQKIKNNPFVKQKNLITL-DLSHNG--LSSTKLGTQV---QLENLQELLLSNNKIQALK 161

Query: 215 -TSITPVNLTSPAVLDLSLNHFNSLFPNWLVNISTLVYVDLSDCDLYGRIPIGFGE---L 270
              +     +S   L+LS N      P     I  L  + L++  L   +          
Sbjct: 162 SEELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELAN 221

Query: 271 PNLQYLSLAGNNNLSGSCSQLFRG-SWKKIQILNFASNKLHGKLPSSVANMTSLTNFDLF 329
            +++ LSL  N+ LS + +  F G  W  + +L+ + N L+     S A +  L  F L 
Sbjct: 222 TSIRNLSL-SNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLE 280

Query: 330 DKKVEGGIPSSIARLCYLKEFDLSGNNLTGSLPEILQGTDLCVSSNSPLPSLISMRLGNN 389
              ++     S+  L  ++  +L  +    S+  +     +   S   L  L  + + +N
Sbjct: 281 YNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSI-SLASLPKIDDFSFQWLKCLEHLNMEDN 339

Query: 390 HLKGKLPEWLSQLENLVELTLSYNLLQ--GPIPASLGNLKN--LTKLNLPGNQLNGTLPE 445
            + G      + L NL  L+LS +          +  +L +  L  LNL  N+++    +
Sbjct: 340 DIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESD 399

Query: 446 TLGSLPELSVLDVSSNSLTGIISEIHFSRLSKLKFLGLSSNSFILNVSSSWIPPFQVQSL 505
               L  L VLD+  N +   ++   +  L  +  + LS N                   
Sbjct: 400 AFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYN------------------- 440

Query: 506 NMRSCQLGPSFPSWLKTQQGVSFLDFSNASISGPIPNWFWDISSKLSLLNVSLNQLQGQL 565
                                               N F  + S L  L +    L+   
Sbjct: 441 -----------------------------KYLQLTRNSFALVPS-LQRLMLRRVALKNVD 470

Query: 566 PNPLNIAPFADVDFRSNLLEGPIPLPIVEIELLDLSNNHFSGPIPQNISGSMPNLIFLSV 625
            +P    P        NL              LDLSNN+ +  I  ++   +  L  L +
Sbjct: 471 SSPSPFQPL------RNLTI------------LDLSNNNIAN-INDDMLEGLEKLEILDL 511

Query: 626 SGNRLTGKIPGSIGEMQLLQVIDLSRNSISGSISSSIGNCTFLKVLDLSYSSLSGVIPAS 685
             N L                  L +++  G     +   + L +L+L  +    +    
Sbjct: 512 QHNNLA----------------RLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEV 555

Query: 686 LGQLTRLQSLHLNNNKLTGNLPSSFQNLTSLETLDLGNNRFSGNIPSLLGNGFVGLRILS 745
              L  L+ + L  N L     S F N  SL++L+L  N  +     + G  F  L  L 
Sbjct: 556 FKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTELD 615

Query: 746 LRSNAFSGEIPS-----KLSNLSSLQVLDLAENNLTGSIP 780
           +R N F     S        N +   + +L+ + L  + P
Sbjct: 616 MRFNPFDCTCESIAWFVNWINETHTNIPELSSHYLCNTPP 655

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  185 bits (471), Expect = 4e-49
 Identities = 88/418 (21%), Positives = 149/418 (35%), Gaps = 33/418 (7%)

Query: 91  SDSSGSLLEYLDLSFNTFNDIPIPEFLG-SLENLQYLNLSEAGFTGVVPSSLGNLHRLQY 149
            + + + +  L LS +  +      FLG    NL  L+LS      V   S   L +L+Y
Sbjct: 217 LELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEY 276

Query: 150 FDVSA-ELFALSADSLDWLTGLVSLKHLAMNRVDLSLVGSEWLGI----LKNLPNLTELH 204
           F +    +  L + SL  L  +  L +L  +    S+  +    I     + L  L  L+
Sbjct: 277 FFLEYNNIQHLFSHSLHGLFNVRYL-NLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLN 335

Query: 205 LSVCGLTGSITSITPVNLTSPAVLDLSLNHFNSLFPNWLV----NISTLVYVDLSDCDLY 260
           +    + G  ++     L +   L LS +  +              S L  ++L+   + 
Sbjct: 336 MEDNDIPGIKSN-MFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKIS 394

Query: 261 GRIPIGFGELPNLQYLSLAGNNNLSGSCSQLFRGSWKKIQILNFASNKLHGKLPSSVANM 320
                 F  L +L+ L L G N +    +       + I  +  + NK      +S A +
Sbjct: 395 KIESDAFSWLGHLEVLDL-GLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALV 453

Query: 321 TSLTNFDLFDKKVEG--GIPSSIARLCYLKEFDLSGNNLTGSLPEILQGTDLCVSSNSPL 378
            SL    L    ++     PS    L  L   DLS NN+     ++L+G          L
Sbjct: 454 PSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEG----------L 503

Query: 379 PSLISMRLGNNHL--------KGKLPEWLSQLENLVELTLSYNLLQGPIPASLGNLKNLT 430
             L  + L +N+L         G    +L  L +L  L L  N           +L  L 
Sbjct: 504 EKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELK 563

Query: 431 KLNLPGNQLNGTLPETLGSLPELSVLDVSSNSLTGIISEIHFSRLSKLKFLGLSSNSF 488
            ++L  N LN        +   L  L++  N +T +  ++       L  L +  N F
Sbjct: 564 IIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTELDMRFNPF 621

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  105 bits (265), Expect = 2e-23
 Identities = 54/288 (18%), Positives = 95/288 (32%), Gaps = 25/288 (8%)

Query: 80  INLGNPYHVVNSDSSGSLLEYLDLSFNTFNDIPIPEFLGSLENLQYLNLSEAGFTGVVP- 138
            +L    +      + S L  L+L+ N  + I   +    L +L+ L+L        +  
Sbjct: 365 TSLRTLTNETFVSLAHSPLHILNLTKNKISKIE-SDAFSWLGHLEVLDLGLNEIGQELTG 423

Query: 139 SSLGNLHRLQYFDVSAELFALSADSLDWLTGLVSLKHLAMNRVDLSLVGSEWLGILKNLP 198
                L  +    +S         + +    + SL+ L + RV L  V S      + L 
Sbjct: 424 QEWRGLENIFEIYLSYNK--YLQLTRNSFALVPSLQRLMLRRVALKNVDSS-PSPFQPLR 480

Query: 199 NLTELHLSVCGLTGSITSITPVNLTSPAVLDLSLNHFNSLFPNWLVNISTLVYVDLSDCD 258
           NLT L LS   +           L    +LDL  N+   L+ +                 
Sbjct: 481 NLTILDLSNNNIANINDD-MLEGLEKLEILDLQHNNLARLWKH----------------A 523

Query: 259 LYGRIPIGFGELPNLQYLSLAGNNNLSGSCSQLFRGSWKKIQILNFASNKLHGKLPSSVA 318
             G        L +L  L+L  +N       ++F+    +++I++   N L+    S   
Sbjct: 524 NPGGPIYFLKGLSHLHILNLE-SNGFDEIPVEVFKDL-FELKIIDLGLNNLNTLPASVFN 581

Query: 319 NMTSLTNFDLFDKKVEGGIPSSIARLCY-LKEFDLSGNNLTGSLPEIL 365
           N  SL + +L    +              L E D+  N    +   I 
Sbjct: 582 NQVSLKSLNLQKNLITSVEKKVFGPAFRNLTELDMRFNPFDCTCESIA 629

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 97.4 bits (243), Expect = 7e-21
 Identities = 37/202 (18%), Positives = 57/202 (28%), Gaps = 43/202 (21%)

Query: 714 TSLETLDLGNNRFSGNIPSLLGNGFVGLRILSLRSNAFSGEIPSKLSNLSSLQVLDLAEN 773
            S E  D  + + +  +P  L      + +L+L  N       +  +  S L  LD+  N
Sbjct: 4   VSHEVADCSHLKLT-QVPDDL---PTNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFN 59

Query: 774 NLTGSIPGSVGDLKAMAHVQNIVKYLLFGRYRGIYYEENLVINTKGSSKDTPRLFHFIDL 833
            ++   P     L                          L                 ++L
Sbjct: 60  TISKLEPELCQKLP------------------------ML---------------KVLNL 80

Query: 834 SGNNLHGDFPTQLTKLVGLVVLNLSRNHIGGQIPENISGLHQLASLDLSSNNLSGGIPSS 893
             N L             L  L+L  N I             L +LDLS N LS     +
Sbjct: 81  QHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGT 140

Query: 894 LSSLSFLGYINLSRNQLSGKIP 915
              L  L  + LS N++     
Sbjct: 141 QVQLENLQELLLSNNKIQALKS 162

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score =  265 bits (681), Expect = 3e-81
 Identities = 83/322 (25%), Positives = 138/322 (42%), Gaps = 46/322 (14%)

Query: 623 LSVSGNRLTGKIPGSIGEMQLLQVIDLSRNSISGS--ISSSIGNCTFLKVLDLS-YSSLS 679
                    G +  +  +   +  +DLS  ++     I SS+ N  +L  L +   ++L 
Sbjct: 31  TDCCNRTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLV 90

Query: 680 GVIPASLGQLTRLQSLHLNNNKLTGNLPSSFQNLTSLETLDLGNNRFSGNIPSLLGNGFV 739
           G IP ++ +LT+L  L++ +  ++G +P     + +L TLD   N  SG +P  + +   
Sbjct: 91  GPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISS-LP 149

Query: 740 GLRILSLRSNAFSGEIPSKLSNLSSL-QVLDLAENNLTGSIPGSVGDLKAMAHVQNIVKY 798
            L  ++   N  SG IP    + S L   + ++ N LTG IP +  +L            
Sbjct: 150 NLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN----------- 198

Query: 799 LLFGRYRGIYYEENLVINTKGSSKDTPRLFHFIDLSGNNLHGDFPTQLTKLVGLVVLNLS 858
                                          F+DLS N L GD             ++L+
Sbjct: 199 -----------------------------LAFVDLSRNMLEGDASVLFGSDKNTQKIHLA 229

Query: 859 RNHIGGQIPENISGLHQLASLDLSSNNLSGGIPSSLSSLSFLGYINLSRNQLSGKIPFEG 918
           +N +   + + +     L  LDL +N + G +P  L+ L FL  +N+S N L G+IP  G
Sbjct: 230 KNSLAFDLGK-VGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQGG 288

Query: 919 HMTTFDASSFAGNPGLCGDPLP 940
           ++  FD S++A N  LCG PLP
Sbjct: 289 NLQRFDVSAYANNKCLCGSPLP 310

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score =  207 bits (528), Expect = 6e-60
 Identities = 76/275 (27%), Positives = 126/275 (45%), Gaps = 19/275 (6%)

Query: 514 PSFPSWLKTQQGVSFLDFSNASISGPIPNWFWDISSKLSLLNVSLNQLQGQLPNPLNIAP 573
            +  SWL T       D  N +  G + +     + +++ L++S   L    P P ++A 
Sbjct: 22  TTLSSWLPT------TDCCNRTWLGVLCDTDTQ-TYRVNNLDLSGLNLPKPYPIPSSLAN 74

Query: 574 FA---DVDFRS-NLLEGPIPLPI---VEIELLDLSNNHFSGPIPQNISGSMPNLIFLSVS 626
                 +     N L GPIP  I    ++  L +++ + SG IP  +   +  L+ L  S
Sbjct: 75  LPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFL-SQIKTLVTLDFS 133

Query: 627 GNRLTGKIPGSIGEMQLLQVIDLSRNSISGSISSSIGNCTFL-KVLDLSYSSLSGVIPAS 685
            N L+G +P SI  +  L  I    N ISG+I  S G+ + L   + +S + L+G IP +
Sbjct: 134 YNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPT 193

Query: 686 LGQLTRLQSLHLNNNKLTGNLPSSFQNLTSLETLDLGNNRFSGNIPSLLGNGFVGLRILS 745
              L  L  + L+ N L G+    F +  + + + L  N  + ++  + G     L  L 
Sbjct: 194 FANLN-LAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGKV-GL-SKNLNGLD 250

Query: 746 LRSNAFSGEIPSKLSNLSSLQVLDLAENNLTGSIP 780
           LR+N   G +P  L+ L  L  L+++ NNL G IP
Sbjct: 251 LRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIP 285

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score =  191 bits (487), Expect = 2e-54
 Identities = 81/345 (23%), Positives = 130/345 (37%), Gaps = 81/345 (23%)

Query: 410 LSYNLLQGPIPASLGNLKNLTKLNLPGNQLNGT--LPETLGSLPELSVLDVSS-NSLTGI 466
                  G +  +      +  L+L G  L     +P +L +LP L+ L +   N+L G 
Sbjct: 33  CCNRTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGP 92

Query: 467 I-SEIHFSRLSKLKFLGLSSNSFILNVSSSWIPPFQVQSLNMRSCQLGPSFPSWLKTQQG 525
           I   I  ++L++L +L ++  +                                      
Sbjct: 93  IPPAI--AKLTQLHYLYITHTNV------------------------------------- 113

Query: 526 VSFLDFSNASISGPIPNWFWDISSKLSLLNVSLNQLQGQLPNPLNIAPFADVDFRSNLLE 585
                      SG IP++   I   L  L+ S N L G LP  +           S+L  
Sbjct: 114 -----------SGAIPDFLSQIK-TLVTLDFSYNALSGTLPPSI-----------SSL-- 148

Query: 586 GPIPLPIVEIELLDLSNNHFSGPIPQNISGSMPNLI-FLSVSGNRLTGKIPGSIGEMQLL 644
                    +  +    N  SG IP +  GS   L   +++S NRLTGKIP +   + L 
Sbjct: 149 -------PNLVGITFDGNRISGAIPDSY-GSFSKLFTSMTISRNRLTGKIPPTFANLNL- 199

Query: 645 QVIDLSRNSISGSISSSIGNCTFLKVLDLSYSSLSGVIPASLGQLTRLQSLHLNNNKLTG 704
             +DLSRN + G  S   G+    + + L+ +SL+  +   +G    L  L L NN++ G
Sbjct: 200 AFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLG-KVGLSKNLNGLDLRNNRIYG 258

Query: 705 NLPSSFQNLTSLETLDLGNNRFSGNIPSLLGNGFVGLRILSLRSN 749
            LP     L  L +L++  N   G IP   G       + +  +N
Sbjct: 259 TLPQGLTQLKFLHSLNVSFNNLCGEIPQ--GGNLQRFDVSAYANN 301

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score =  188 bits (481), Expect = 1e-53
 Identities = 78/262 (29%), Positives = 113/262 (43%), Gaps = 12/262 (4%)

Query: 526 VSFLDFSNASISG--PIPNWFWDISSKLSLLNVSLNQLQGQLPNPL-NIAPFADVDFRSN 582
           V+ LD S  ++    PIP+   ++     L    +N L G +P  +  +     +     
Sbjct: 52  VNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHT 111

Query: 583 LLEGPIPLPI---VEIELLDLSNNHFSGPIPQNISGSMPNLIFLSVSGNRLTGKIPGSIG 639
            + G IP  +     +  LD S N  SG +P +I  S+PNL+ ++  GNR++G IP S G
Sbjct: 112 NVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSI-SSLPNLVGITFDGNRISGAIPDSYG 170

Query: 640 EMQ-LLQVIDLSRNSISGSISSSIGNCTFLKVLDLSYSSLSGVIPASLGQLTRLQSLHLN 698
               L   + +SRN ++G I  +  N   L  +DLS + L G      G     Q +HL 
Sbjct: 171 SFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRNMLEGDASVLFGSDKNTQKIHLA 229

Query: 699 NNKLTGNLPSSFQNLTSLETLDLGNNRFSGNIPSLLGNGFVGLRILSLRSNAFSGEIPSK 758
            N L  +L        +L  LDL NNR  G +P  L      L  L++  N   GEIP  
Sbjct: 230 KNSLAFDLGK-VGLSKNLNGLDLRNNRIYGTLPQGLTQ-LKFLHSLNVSFNNLCGEIPQ- 286

Query: 759 LSNLSSLQVLDLAENNLTGSIP 780
             NL    V   A N      P
Sbjct: 287 GGNLQRFDVSAYANNKCLCGSP 308

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score =  176 bits (450), Expect = 2e-49
 Identities = 68/263 (25%), Positives = 113/263 (42%), Gaps = 15/263 (5%)

Query: 228 LDLSLNHFNSLFPNWLVNISTLVYVDLSDCDLYGRIPI--GFGELPNLQYLSLAGNNNLS 285
            D     +  +  +       +  +DLS  +L    PI      LP L +L + G NNL 
Sbjct: 31  TDCCNRTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLV 90

Query: 286 GSCSQLFRGSWKKIQILNFASNKLHGKLPSSVANMTSLTNFDLFDKKVEGGIPSSIARLC 345
           G           ++  L      + G +P  ++ + +L   D     + G +P SI+ L 
Sbjct: 91  GPIPPAI-AKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLP 149

Query: 346 YLKEFDLSGNNLTGSLPEILQGTDLCVSSNSPLPSLISMRLGNNHLKGKLPEWLSQLENL 405
            L      GN ++G++P+          S S L    SM +  N L GK+P   + L NL
Sbjct: 150 NLVGITFDGNRISGAIPD-------SYGSFSKL--FTSMTISRNRLTGKIPPTFANL-NL 199

Query: 406 VELTLSYNLLQGPIPASLGNLKNLTKLNLPGNQLNGTLPETLGSLPELSVLDVSSNSLTG 465
             + LS N+L+G      G+ KN  K++L  N L   L + +G    L+ LD+ +N + G
Sbjct: 200 AFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGK-VGLSKNLNGLDLRNNRIYG 258

Query: 466 IISEIHFSRLSKLKFLGLSSNSF 488
            + +   ++L  L  L +S N+ 
Sbjct: 259 TLPQ-GLTQLKFLHSLNVSFNNL 280

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score =  168 bits (428), Expect = 1e-46
 Identities = 80/411 (19%), Positives = 137/411 (33%), Gaps = 134/411 (32%)

Query: 302 LNFASNKLHGKLPSSVANMTSLTNFDLFDKKVEG--GIPSSIARLCYLKEFDLSGNNLTG 359
            +  +    G L  +      + N DL    +     IPSS+A L YL    + G N   
Sbjct: 31  TDCCNRTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGIN--- 87

Query: 360 SLPEILQGTDLCVSSNSPLPSLISMRLGNNHLKGKLPEWLSQLENLVELTLSYNLLQGPI 419
                                         +L G +P  +++L  L  L +++  + G I
Sbjct: 88  ------------------------------NLVGPIPPAIAKLTQLHYLYITHTNVSGAI 117

Query: 420 PASLGNLKNLTKLNLPGNQLNGTLPETLGSLPELSVLDVSSNSLTGIISEIHFSRLSKLK 479
           P  L  +K L  L+   N L+GTLP ++ SLP L  +    N ++G I +  +   SKL 
Sbjct: 118 PDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPD-SYGSFSKL- 175

Query: 480 FLGLSSNSFILNVSSSWIPPFQVQSLNMRSCQLGPSFPSWLKTQQGVSFLDFSNASISGP 539
                                                          + +  S   ++G 
Sbjct: 176 ----------------------------------------------FTSMTISRNRLTGK 189

Query: 540 IPNWFWDISSKLSLLNVSLNQLQGQLPNPLNIAPFADVDFRSNLLEGPIPLPIVEIELLD 599
           IP  F +++  L+ +++S N L+G                  +             + + 
Sbjct: 190 IPPTFANLN--LAFVDLSRNMLEGDASVLF-----------GSD---------KNTQKIH 227

Query: 600 LSNNHFSGPIPQNISGSMPNLIFLSVSGNRLTGKIPGSIGEMQLLQVIDLSRNSISGSIS 659
           L+ N  +  +                            +G  + L  +DL  N I G++ 
Sbjct: 228 LAKNSLAFDLG--------------------------KVGLSKNLNGLDLRNNRIYGTLP 261

Query: 660 SSIGNCTFLKVLDLSYSSLSGVIPASLGQLTRLQSLHL-NNNKLTGN-LPS 708
             +    FL  L++S+++L G IP   G L R       NN  L G+ LP+
Sbjct: 262 QGLTQLKFLHSLNVSFNNLCGEIPQG-GNLQRFDVSAYANNKCLCGSPLPA 311

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score =  163 bits (414), Expect = 1e-44
 Identities = 75/314 (23%), Positives = 123/314 (39%), Gaps = 45/314 (14%)

Query: 126 LNLSEAGFTGVVPSSLGNLHRLQYFDVSAELFALSADSLDWLTGLVSLKHLAMNRVDLSL 185
            +     + GV+  +    +R+   D+S                           +    
Sbjct: 31  TDCCNRTWLGVLCDTDTQTYRVNNLDLSG------------------------LNLPKPY 66

Query: 186 VGSEWLGILKNLPNLTELHLS-VCGLTGSI-TSITPVNLTSPAVLDLSLNHFNSLFPNWL 243
                L    NLP L  L++  +  L G I  +I    LT    L ++  + +   P++L
Sbjct: 67  PIPSSLA---NLPYLNFLYIGGINNLVGPIPPAIA--KLTQLHYLYITHTNVSGAIPDFL 121

Query: 244 VNISTLVYVDLSDCDLYGRIPIGFGELPNLQYLSLAGNNNLSGSCSQLFRGSWKKIQILN 303
             I TLV +D S   L G +P     LPNL  ++    N +SG+    +    K    + 
Sbjct: 122 SQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITF-DGNRISGAIPDSYGSFSKLFTSMT 180

Query: 304 FASNKLHGKLPSSVANMTSLTNFDLFDKKVEGGIPSSIARLCYLKEFDLSGNNLTGSLPE 363
            + N+L GK+P + AN+ +L   DL    +EG            ++  L+ N+L   L +
Sbjct: 181 ISRNRLTGKIPPTFANL-NLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGK 239

Query: 364 ILQGTDLCVSSNSPLPSLISMRLGNNHLKGKLPEWLSQLENLVELTLSYNLLQGPIPASL 423
           +               +L  + L NN + G LP+ L+QL+ L  L +S+N L G IP   
Sbjct: 240 VGL-----------SKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQG- 287

Query: 424 GNLKNLTKLNLPGN 437
           GNL+         N
Sbjct: 288 GNLQRFDVSAYANN 301

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score =  128 bits (324), Expect = 1e-32
 Identities = 61/242 (25%), Positives = 85/242 (35%), Gaps = 68/242 (28%)

Query: 682 IPASLGQLTRLQS----LHLNNNKLTGNLPSSFQNLTSLETLDLGNNRFSGNIPSLLGNG 737
           I   LG  T L S        N    G L  +      +  LDL                
Sbjct: 14  IKKDLGNPTTLSSWLPTTDCCNRTWLGVLCDTDTQTYRVNNLDLSGLNLPK--------- 64

Query: 738 FVGLRILSLRSNAFSGEIPSKLSNLSSLQVLDLA-ENNLTGSIPGSVGDLKAMAHVQNIV 796
                            IPS L+NL  L  L +   NNL G IP ++  L          
Sbjct: 65  --------------PYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLT--------- 101

Query: 797 KYLLFGRYRGIYYEENLVINTKGSSKDTPRLFHFIDLSGNNLHGDFPTQLTKLVGLVVLN 856
                           L               H++ ++  N+ G  P  L+++  LV L+
Sbjct: 102 ---------------QL---------------HYLYITHTNVSGAIPDFLSQIKTLVTLD 131

Query: 857 LSRNHIGGQIPENISGLHQLASLDLSSNNLSGGIPSSLSSLSFLG-YINLSRNQLSGKIP 915
            S N + G +P +IS L  L  +    N +SG IP S  S S L   + +SRN+L+GKIP
Sbjct: 132 FSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIP 191

Query: 916 FE 917
             
Sbjct: 192 PT 193

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  274 bits (702), Expect = 7e-81
 Identities = 118/612 (19%), Positives = 215/612 (35%), Gaps = 40/612 (6%)

Query: 194 LKNLPNLTELHLSVCGLTGSITSITPVNLTSPAVLDLSLNHFNSLFPNWLVNISTLVYVD 253
           ++ +PN+T   +        I    P +      LDLS N    L      +   L  +D
Sbjct: 4   VEVVPNITYQCME-LNFY-KIPDNLPFSTK---NLDLSFNPLRHLGSYSFFSFPELQVLD 58

Query: 254 LSDCDLYGRIPIGFGELPNLQYLSLAGNNNLSGSCSQLFRGSWKKIQILNFASNKLHGKL 313
           LS C++       +  L +L  L L   N +       F G    +Q L      L    
Sbjct: 59  LSRCEIQTIEDGAYQSLSHLSTLILT-GNPIQSLALGAFSGL-SSLQKLVAVETNLASLE 116

Query: 314 PSSVANMTSLTNFDLFDKKVEGG-IPSSIARLCYLKEFDLSGNNLTGSLPEILQGTDLCV 372
              + ++ +L   ++    ++   +P   + L  L+  DLS N +           DL V
Sbjct: 117 NFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCT-----DLRV 171

Query: 373 SSNSPLPSLISMRLGNNHLKGKLPEWLSQLENLVELTLSYNLLQGPIPA-SLGNLKNLTK 431
               PL   +S+ L  N +    P    ++  L +LTL  N     +    +  L  L  
Sbjct: 172 LHQMPL-LNLSLDLSLNPMNFIQPGAFKEI-RLHKLTLRNNFDSLNVMKTCIQGLAGLEV 229

Query: 432 LNLPGNQLNGTL------PETLGSLPELSVLDVSSNSLTGIISEI--HFSRLSKLKFLGL 483
             L   +              L  L  L++ +     L   + +I   F+ L+ +    L
Sbjct: 230 HRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSL 289

Query: 484 SSNSFILNVSSSWIPPFQVQSLNMRSCQLGPSFPSWLKTQQGVSFLDFSNASISGPIPNW 543
            S +  +     +   F  Q L + +C+ G      LK+ +    L F++          
Sbjct: 290 VSVT--IERVKDFSYNFGWQHLELVNCKFGQFPTLKLKSLKR---LTFTSNKGGNAFSEV 344

Query: 544 FWDISSKLSLLNVSLNQLQGQLPNPLNIAPFAD---VDFRSNLLEGPIP--LPIVEIELL 598
                  L  L++S N L  +     +         +D   N +       L + ++E L
Sbjct: 345 D---LPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHL 401

Query: 599 DLSNNHFSGPIPQNISGSMPNLIFLSVSGNRLTGKIPGSIGEMQLLQVIDLSRNSISGSI 658
           D  +++       ++  S+ NLI+L +S         G    +  L+V+ ++ NS   + 
Sbjct: 402 DFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENF 461

Query: 659 -SSSIGNCTFLKVLDLSYSSLSGVIPASLGQLTRLQSLHLNNNKLTGNLPSSFQNLTSLE 717
                     L  LDLS   L  + P +   L+ LQ L++++N         ++ L SL+
Sbjct: 462 LPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQ 521

Query: 718 TLDLGNNRFSGNIPSLLGNGFVGLRILSLRSNAFSGEIPSK--LSNLSSLQVLDLAENNL 775
            LD   N    +    L +    L  L+L  N F+     +  L  +   + L +    +
Sbjct: 522 VLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCEHQSFLQWIKDQRQLLVEVERM 581

Query: 776 TGSIPGSVGDLK 787
             + P     + 
Sbjct: 582 ECATPSDKQGMP 593

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  256 bits (657), Expect = 1e-74
 Identities = 111/587 (18%), Positives = 188/587 (32%), Gaps = 81/587 (13%)

Query: 337 IPSSIARLCYLKEFDLSGNNLTGSLPEILQGTDLCVSSNSPLPSLISMRLGNNHLKGKLP 396
           IP ++      K  DLS N L                     P L  + L    ++    
Sbjct: 22  IPDNLPF--STKNLDLSFNPLRHLGSYSFFS----------FPELQVLDLSRCEIQTIED 69

Query: 397 EWLSQLENLVELTLSYNLLQGPIPASLGNLKNLTKLNLPGNQLNGTLPETLGSLPELSVL 456
                L +L  L L+ N +Q     +   L +L KL      L       +G L  L  L
Sbjct: 70  GAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKEL 129

Query: 457 DVSSNSLTGIISEIHFSRLSKLKFLGLSSNSFILNVSSSWIP----PFQVQSLNMRSCQL 512
           +V+ N +       +FS L+ L+ L LSSN       +        P    SL++    +
Sbjct: 130 NVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPM 189

Query: 513 GPSFPSWLKTQQGVSFLDFSNASISGPIPNWFWDISSKLSLLNVSLNQLQGQLPNPLNIA 572
               P   K  + +  L   N   S  +        + L +  + L + + +        
Sbjct: 190 NFIQPGAFKEIR-LHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLE---- 244

Query: 573 PFADVDFRSNLLEGPIPLPIVEIELLDLSNNHFSGPIPQNISGSMPNLIFLSVSGNRLTG 632
                 F  + LEG   L  + IE   L+   +      ++   + N+   S+    +  
Sbjct: 245 -----KFDKSALEG---LCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIER 296

Query: 633 KIPGSIGEMQLLQVIDLSRNSISGSISSSIGNCTFLKVLDLSYSSLSGVIPASLGQLTRL 692
               S       Q ++L                    +  L+++S  G    S   L  L
Sbjct: 297 VKDFS--YNFGWQHLELVNCKFGQ-----FPTLKLKSLKRLTFTSNKGGNAFSEVDLPSL 349

Query: 693 QSLHLNNNKLT--GNLPSSFQNLTSLETLDLGNNRFSGNIPSLLGNGFVGLRILSLRSNA 750
           + L L+ N L+  G    S    TSL+ LDL  N       + LG     L  L  + + 
Sbjct: 350 EFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLG--LEQLEHLDFQHSN 407

Query: 751 FSGEIP-SKLSNLSSLQVLDLAENNLTGSIPGSVGDLKAMAHVQNIVKYLLFGRYRGIYY 809
                  S   +L +L  LD++  +   +  G    L ++                    
Sbjct: 408 LKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEV------------------ 449

Query: 810 EENLVINTKGSSKDTPRLFHFIDLSGNNLHGDF-PTQLTKLVGLVVLNLSRNHIGGQIPE 868
                                + ++GN+   +F P   T+L  L  L+LS+  +    P 
Sbjct: 450 ---------------------LKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPT 488

Query: 869 NISGLHQLASLDLSSNNLSGGIPSSLSSLSFLGYINLSRNQLSGKIP 915
             + L  L  L++S NN           L+ L  ++ S N +     
Sbjct: 489 AFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKK 535

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  255 bits (654), Expect = 4e-74
 Identities = 116/685 (16%), Positives = 210/685 (30%), Gaps = 111/685 (16%)

Query: 227 VLDLSLNHFNSLFPNWLVNISTLVYVDLSDCDLYGRIPIGFGELPNLQYLSLAGNNNLSG 286
                  +F  +  N   +   L   DLS   L       F   P LQ L L     +  
Sbjct: 11  TYQCMELNFYKIPDNLPFSTKNL---DLSFNPLRHLGSYSFFSFPELQVLDL-SRCEIQT 66

Query: 287 SCSQLFRGSWKKIQILNFASNKLHGKLPSSVANMTSLTNFDLFDKKVEGGIPSSIARLCY 346
                ++     +  L    N +      + + ++SL                       
Sbjct: 67  IEDGAYQS-LSHLSTLILTGNPIQSLALGAFSGLSSL----------------------- 102

Query: 347 LKEFDLSGNNLTGSLPEILQGTDLCVSSNSPLPSLISMRLGNNHLKG-KLPEWLSQLENL 405
            ++      NL       +            L +L  + + +N ++  KLPE+ S L NL
Sbjct: 103 -QKLVAVETNLASLENFPIGH----------LKTLKELNVAHNLIQSFKLPEYFSNLTNL 151

Query: 406 VELTLSYNLLQGPIPASLGNLKNLT----KLNLPGNQLNGTLPETLGSLPELSVLDVSSN 461
             L LS N +Q      L  L  +      L+L  N +N   P     +  L  L + +N
Sbjct: 152 EHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEI-RLHKLTLRNN 210

Query: 462 SLTGIISEIHFSRLSKLKFLGLSSNSFILNVSSSWIPPFQVQSLNMRSCQLGPSFPSWLK 521
             +  + +     L+ L+   L    F    +        ++ L                
Sbjct: 211 FDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGL---------------- 254

Query: 522 TQQGVSFLDFSNASISGPIPNWFWDISSKLSLLNVSLNQLQGQLPNPLNIAPFADVDFRS 581
               +     +            ++  + +S  ++    ++       N   +  ++  +
Sbjct: 255 CNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFG-WQHLELVN 313

Query: 582 NLLEGPIPLPIVEIELLDLSNNHFSGPIPQNISGSMPNLIFLSVSGNRLT--GKIPGSIG 639
                   L +  ++ L  ++N             +P+L FL +S N L+  G    S  
Sbjct: 314 CKFGQFPTLKLKSLKRLTFTSNKGGNAFS---EVDLPSLEFLDLSRNGLSFKGCCSQSDF 370

Query: 640 EMQLLQVIDLSRNSISGSISSSIGNCTFLKVLDLSYSSLSGVIPAS-LGQLTRLQSLHLN 698
               L+ +DLS N +   +SS+      L+ LD  +S+L  +   S    L  L  L ++
Sbjct: 371 GTTSLKYLDLSFNGVIT-MSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDIS 429

Query: 699 NNKLTGNLPSSFQNLTSLETLDLGNNRFSGNIPSLLGNGFVGLRILSLRSNAFSGEIPSK 758
           +          F  L+SLE L +  N F  N    +      L  L L         P+ 
Sbjct: 430 HTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTA 489

Query: 759 LSNLSSLQVLDLAENNLTGSIPGSVGDLKAMAHVQNIVKYLLFGRYRGIYYEENLVINTK 818
            ++LSSLQVL+++ NN           L ++  +                          
Sbjct: 490 FNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVL-------------------------- 523

Query: 819 GSSKDTPRLFHFIDLSGNNLHGDFPTQLTKLVG-LVVLNLSRNHIGGQIPEN--ISGLHQ 875
                        D S N++      +L      L  LNL++N           +  +  
Sbjct: 524 -------------DYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCEHQSFLQWIKD 570

Query: 876 LASLDLSSNNLSGGIPSSLSSLSFL 900
              L +    +    PS    +  L
Sbjct: 571 QRQLLVEVERMECATPSDKQGMPVL 595

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  254 bits (652), Expect = 7e-74
 Identities = 127/613 (20%), Positives = 211/613 (34%), Gaps = 82/613 (13%)

Query: 320 MTSLTNFDLFDKKVEGGIPSSIARLCYLKEFDLSGNNLTGSLPEILQGTDLCVSSNSPLP 379
             S  N DL    +      S      L+  DLS   +        Q           L 
Sbjct: 27  PFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQS----------LS 76

Query: 380 SLISMRLGNNHLKGKLPEWLSQLENLVELTLSYNLLQGPIPASLGNLKNLTKLNLPGNQL 439
            L ++ L  N ++       S L +L +L      L       +G+LK L +LN+  N +
Sbjct: 77  HLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLI 136

Query: 440 NGT-LPETLGSLPELSVLDVSSNSLTGIISEIHFSRLSKLKFLGLS---SNSFILNVSSS 495
               LPE   +L  L  LD+SSN +  I        L ++  L LS   S + +  +   
Sbjct: 137 QSFKLPEYFSNLTNLEHLDLSSNKIQSIYCT-DLRVLHQMPLLNLSLDLSLNPMNFIQPG 195

Query: 496 WIPPFQVQSLNMRSCQL-GPSFPSWLKTQQGVSFLDFSNASISGPIPNWFWDISS----- 549
                ++  L +R+         + ++   G+                  +D S+     
Sbjct: 196 AFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLC 255

Query: 550 KLSLLNVSLNQLQGQLPNPLNI-APFADV---DFRSNLLEGPIPLPI-VEIELLDLSNNH 604
            L++    L  L   L + +++     +V      S  +E           + L+L N  
Sbjct: 256 NLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVNCK 315

Query: 605 FSGPIPQNISGSMPNLIFLSVSGNRLTGKIPGSIGEMQLLQVIDLSRNSIS--GSISSSI 662
           F    P     S+  L F S  G         S  ++  L+ +DLSRN +S  G  S S 
Sbjct: 316 FGQ-FPTLKLKSLKRLTFTSNKGG-----NAFSEVDLPSLEFLDLSRNGLSFKGCCSQSD 369

Query: 663 GNCTFLKVLDLSYSSLSGVIPASLGQLTRLQSLHLNNNKLTGNLPSS-FQNLTSLETLDL 721
              T LK LDLS++ +   + ++   L +L+ L   ++ L      S F +L +L  LD+
Sbjct: 370 FGTTSLKYLDLSFNGVIT-MSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDI 428

Query: 722 GNNRFSGNIPSLLGNGFVGLRILSLRSNAFSGEI-PSKLSNLSSLQVLDLAENNLTGSIP 780
            +         +       L +L +  N+F     P   + L +L  LDL++  L    P
Sbjct: 429 SHTHTRVAFNGIFNG-LSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSP 487

Query: 781 GSVGDLKAMAHVQNIVKYLLFGRYRGIYYEENLVINTKGSSKDTPRLFHFIDLSGNNLHG 840
            +   L ++                                         +++S NN   
Sbjct: 488 TAFNSLSSL---------------------------------------QVLNMSHNNFFS 508

Query: 841 DFPTQLTKLVGLVVLNLSRNHIGGQIPENISGL-HQLASLDLSSNNLSGGIPSSLSSLSF 899
                   L  L VL+ S NHI     + +      LA L+L+ N+ +          SF
Sbjct: 509 LDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCEHQ----SF 564

Query: 900 LGYINLSRNQLSG 912
           L +I   R  L  
Sbjct: 565 LQWIKDQRQLLVE 577

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  212 bits (543), Expect = 5e-59
 Identities = 118/642 (18%), Positives = 219/642 (34%), Gaps = 90/642 (14%)

Query: 98  LEYLDLSFNTFNDIPIPEFLGSLENLQYLNLSEAGFTGVVPSSLGNLHRLQYFDVSAELF 157
            + LDLSFN    +       S   LQ L+LS      +   +  +L  L    ++    
Sbjct: 30  TKNLDLSFNPLRHLG-SYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGN-- 86

Query: 158 ALSADSLDWLTGLVSLKHLAMNRVDLSLVGSEWLGILKNLPNLTELHLSVCGLTGSITSI 217
            + + +L   +GL SL+ L     +L+ + +  +G   +L  L EL+++   +       
Sbjct: 87  PIQSLALGAFSGLSSLQKLVAVETNLASLENFPIG---HLKTLKELNVAHNLIQSFKLPE 143

Query: 218 TPVNLTSPAVLDLSLNHFNSLFPNWLVNISTL----VYVDLSDCDLYGRIPIGFGELPNL 273
              NLT+   LDLS N   S++   L  +  +    + +DLS   +    P  F E+  L
Sbjct: 144 YFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEI-RL 202

Query: 274 QYLSLAGNNNLSGSCSQLFRGSWKKIQILNFASNKLHGK---LPSSVANMTSLTNFDLFD 330
             L+L  NN  S +  +        +++      +   +        + +  L N  + +
Sbjct: 203 HKLTLR-NNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEE 261

Query: 331 ------KKVEGGIPSSIARLCYLKEFDLSGNNLTGSLPEILQGTDLCVSSNSPLPSLISM 384
                       I      L  +  F L    +                  S       +
Sbjct: 262 FRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKD------------FSYNFGWQHL 309

Query: 385 RLGNNHLKGKLPEWLSQLENLVELTLSYNLLQGPIPASLGNLKNLTKLNLPGNQLN--GT 442
            L N          L  L+      L++   +G    S  +L +L  L+L  N L+  G 
Sbjct: 310 ELVNCKFGQFPTLKLKSLKR-----LTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGC 364

Query: 443 LPETLGSLPELSVLDVSSNSLTGIISEIHFSRLSKLKFLGLSSNSFILNVSSSWIPPFQV 502
             ++      L  LD+S N +  + S   F  L +L+ L    ++       S       
Sbjct: 365 CSQSDFGTTSLKYLDLSFNGVITMSSN--FLGLEQLEHLDFQHSNLKQMSEFSVF----- 417

Query: 503 QSLNMRSCQLGPSFPSWLKTQQGVSFLDFSNASISGPIPNWFWDISSKLSLLNVSLNQLQ 562
             L++R+                  +LD S+          F  +SS L +L ++ N  Q
Sbjct: 418 --LSLRNLI----------------YLDISHTHTRVAFNGIFNGLSS-LEVLKMAGNSFQ 458

Query: 563 GQLPNPLNIAPFADVDFRSNLLEGPIPLPIVEIELLDLSNNHFSGPIPQNISGSMPNLIF 622
                              ++        +  +  LDLS        P   +  + +L  
Sbjct: 459 ENFL--------------PDIFTE-----LRNLTFLDLSQCQLEQLSPTAFNS-LSSLQV 498

Query: 623 LSVSGNRLTGKIPGSIGEMQLLQVIDLSRNSISGSISSSIGNC-TFLKVLDLSYSSLSGV 681
           L++S N            +  LQV+D S N I  S    + +  + L  L+L+ +  +  
Sbjct: 499 LNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACT 558

Query: 682 IPAS--LGQLTRLQSLHLNNNKLTGNLPSSFQNLTSLETLDL 721
                 L  +   + L +   ++    PS  Q +  + +L++
Sbjct: 559 CEHQSFLQWIKDQRQLLVEVERMECATPSDKQGM-PVLSLNI 599

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  192 bits (491), Expect = 3e-52
 Identities = 111/598 (18%), Positives = 193/598 (32%), Gaps = 66/598 (11%)

Query: 96  SLLEYLDLSFNTFNDIPIPEFLGSLENLQYLNLSEAGFTGVVPSSLGNLHRLQYFDVSA- 154
             L+ LDLS      I       SL +L  L L+      +   +   L  LQ       
Sbjct: 52  PELQVLDLSRCEIQTI-EDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVET 110

Query: 155 ELFALSADSLDWLTGLVSLKHLAMNRVDLSLVGSEWLGILKNLPNLTELHLSVCGLTGSI 214
            L +L    +  L  L  L ++A N     +   +      NL NL  L LS   +    
Sbjct: 111 NLASLENFPIGHLKTLKEL-NVAHNL----IQSFKLPEYFSNLTNLEHLDLSSNKIQSIY 165

Query: 215 -TSITP-VNLTSPAV-LDLSLNHFNSLFPNWLVNISTLVYVDLSDCDLYGRIP-IGFGEL 270
            T +     +    + LDLSLN  N + P     I  L  + L +      +       L
Sbjct: 166 CTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIR-LHKLTLRNNFDSLNVMKTCIQGL 224

Query: 271 PNLQYLSLAGNNNLS-GSCSQLFRGSWKKIQILNFASNKL------HGKLPSSVANMTSL 323
             L+   L      + G+  +  + + + +  L     +L         +      +T++
Sbjct: 225 AGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNV 284

Query: 324 TNFDLFDKKVEGGIPSSIARLCYLKEFDLSGNNLTGSLPEILQGTDLCVSSNSPLPSLIS 383
           ++F L    +E       +     +  +L            L+                 
Sbjct: 285 SSFSLVSVTIER--VKDFSYNFGWQHLELVNCKFGQFPTLKLKSLK-------------- 328

Query: 384 MRLGNNHLKGKLPEWLSQLENLVELTLSYNLL--QGPIPASLGNLKNLTKLNLPGNQLNG 441
            RL     KG        L +L  L LS N L  +G    S     +L  L+L  N +  
Sbjct: 329 -RLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVI- 386

Query: 442 TLPETLGSLPELSVLDVSSNSLTGIISEIHFSRLSKLKFLGLSSNSFILNVSSSWIPPFQ 501
           T+      L +L  LD   ++L  +     F  L  L +L +S     +  +  +     
Sbjct: 387 TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSS 446

Query: 502 VQSLNMRSCQL-GPSFPSWLKTQQGVSFLDFSNASISGPIPNWFWDISSKLSLLNVSLNQ 560
           ++ L M          P      + ++FLD S   +    P  F  +SS L +LN+S N 
Sbjct: 447 LEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSS-LQVLNMSHNN 505

Query: 561 LQGQLPNPLNIAPFADVDFRSNLLEGPIPLPIVEIELLDLSNNHFSGPIPQNISGSMPNL 620
                  P                          +++LD S NH      Q +     +L
Sbjct: 506 FFSLDTFPYKCLN--------------------SLQVLDYSLNHIMTSKKQELQHFPSSL 545

Query: 621 IFLSVSGNRLTGKIPGS--IGEMQLLQVIDLSRNSISGSISSSIGNCTFLKVLDLSYS 676
            FL+++ N           +  ++  + + +    +  +  S       + VL L+ +
Sbjct: 546 AFLNLTQNDFACTCEHQSFLQWIKDQRQLLVEVERMECATPSDKQG---MPVLSLNIT 600

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  172 bits (438), Expect = 2e-45
 Identities = 81/396 (20%), Positives = 141/396 (35%), Gaps = 29/396 (7%)

Query: 546 DISSKLSLLNVSLNQLQGQLPNPLNIAPF-ADVDFRSNLLEGPIP---LPIVEIELLDLS 601
           ++      L++S N L+          P    +D     ++         +  +  L L+
Sbjct: 25  NLPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILT 84

Query: 602 NNHFSGPIPQNISGSMPNLIFLSVSGNRLTGKIPGSIGEMQLLQVIDLSRNSI-SGSISS 660
            N          SG + +L  L      L       IG ++ L+ ++++ N I S  +  
Sbjct: 85  GNPIQSLALGAFSG-LSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPE 143

Query: 661 SIGNCTFLKVLDLSYSSLSGVIPASLGQLTRLQ----SLHLNNNKLTGNLPSSFQNLTSL 716
              N T L+ LDLS + +  +    L  L ++     SL L+ N +    P +F+ +  L
Sbjct: 144 YFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEI-RL 202

Query: 717 ETLDLGNNRFSGNIPSLLGNGFVGLRILSLRSNAFSGE------IPSKLSNLSSLQVLDL 770
             L L NN  S N+      G  GL +  L    F  E        S L  L +L + + 
Sbjct: 203 HKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEF 262

Query: 771 AENNLTGSIPGSVGDLKAMAHVQNIVKYLLFGRYRGIYYEENL-------VINTKGSSKD 823
               L   +   +     + +V +    L+      +             ++N K     
Sbjct: 263 RLAYLDYYLDDIIDLFNCLTNVSSF--SLVSVTIERVKDFSYNFGWQHLELVNCKFGQFP 320

Query: 824 TPRLFHFIDLSGNNLHGDFPTQLTKLVGLVVLNLSRNHIG--GQIPENISGLHQLASLDL 881
           T +L     L+  +  G        L  L  L+LSRN +   G   ++  G   L  LDL
Sbjct: 321 TLKLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDL 380

Query: 882 SSNNLSGGIPSSLSSLSFLGYINLSRNQLSGKIPFE 917
           S N +   + S+   L  L +++   + L     F 
Sbjct: 381 SFNGVIT-MSSNFLGLEQLEHLDFQHSNLKQMSEFS 415

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  161 bits (410), Expect = 8e-42
 Identities = 61/322 (18%), Positives = 106/322 (32%), Gaps = 24/322 (7%)

Query: 599 DLSNNHFSGPIPQNISGSMPNLIFLSVSGNRLTGKIPGSIGEMQLLQVIDLSRNSISGSI 658
                +F   IP N+     +   L +S N L      S      LQV+DLSR  I    
Sbjct: 13  QCMELNFYK-IPDNLP---FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIE 68

Query: 659 SSSIGNCTFLKVLDLSYSSLSGVIPASLGQLTRLQSLHLNNNKLTGNLPSSFQNLTSLET 718
             +  + + L  L L+ + +  +   +   L+ LQ L      L         +L +L+ 
Sbjct: 69  DGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKE 128

Query: 719 LDLGNNRF-SGNIPSLLGNGFVGLRILSLRSNAFSGEIPSKLSNLSSLQV----LDLAEN 773
           L++ +N   S  +P    N    L  L L SN       + L  L  + +    LDL+ N
Sbjct: 129 LNVAHNLIQSFKLPEYFSN-LTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLN 187

Query: 774 NLTGSIPGSVGDLKAMAHVQNIVKYLLFGRYRGIYYEENLVINTKGSSKDTPRLFHFIDL 833
            +    PG+  +++        +  L               I      +   RL      
Sbjct: 188 PMNFIQPGAFKEIR--------LHKLTLRNNFDSLNVMKTCIQGLAGLEVH-RLVLGEFR 238

Query: 834 SGNNLHGDFPTQLTKLVGLVVLNLSRNHI---GGQIPENISGLHQLASLDLSSNNLSGGI 890
           +  NL     + L  L  L +      ++      I +  + L  ++S  L S  +    
Sbjct: 239 NEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIER-- 296

Query: 891 PSSLSSLSFLGYINLSRNQLSG 912
               S      ++ L   +   
Sbjct: 297 VKDFSYNFGWQHLELVNCKFGQ 318

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  113 bits (285), Expect = 5e-26
 Identities = 55/282 (19%), Positives = 92/282 (32%), Gaps = 14/282 (4%)

Query: 83  GNPYHVVNSDSSGSLLEYLDLSFNTFNDIPIPEFLGSLENLQYLNLSEAGFTGVVPSSLG 142
                 V   S     ++L+L    F   P    L SL+ L + +       G    S  
Sbjct: 291 SVTIERVKDFSYNFGWQHLELVNCKFGQFP-TLKLKSLKRLTFTSNK-----GGNAFSEV 344

Query: 143 NLHRLQYFDVSAELFALSADSLDWLTGLVSLKHLAMNRVDLSLVGSEWLGILKNLPNLTE 202
           +L  L++ D+S    +          G  SLK+L ++   +  + S +L     L  L  
Sbjct: 345 DLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFL----GLEQLEH 400

Query: 203 LHLSVCGLTGSITSITPVNLTSPAVLDLSLNHFNSLFPNWLVNISTLVYVDLSDCDLYGR 262
           L      L         ++L +   LD+S  H    F      +S+L  + ++       
Sbjct: 401 LDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQEN 460

Query: 263 I-PIGFGELPNLQYLSLAGNNNLSGSCSQLFRGSWKKIQILNFASNKLHGKLPSSVANMT 321
             P  F EL NL +L L     L       F      +Q+LN + N            + 
Sbjct: 461 FLPDIFTELRNLTFLDL-SQCQLEQLSPTAFNSL-SSLQVLNMSHNNFFSLDTFPYKCLN 518

Query: 322 SLTNFDLFDKKVEGGIPSSIARLCY-LKEFDLSGNNLTGSLP 362
           SL   D     +       +      L   +L+ N+   +  
Sbjct: 519 SLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCE 560

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 88.2 bits (219), Expect = 5e-18
 Identities = 33/206 (16%), Positives = 63/206 (30%), Gaps = 45/206 (21%)

Query: 711 QNLTSLETLDLGNNRFSGNIPSLLGNGFVGLRILSLRSNAFSGEIPSKLSNLSSLQVLDL 770
           + + ++    +  N +   IP  L       + L L  N           +   LQVLDL
Sbjct: 5   EVVPNITYQCMELNFYK--IPDNL---PFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDL 59

Query: 771 AENNLTGSIPGSVGDLKAMAHVQNIVKYLLFGRYRGIYYEENLVINTKGSSKDTPRLFHF 830
           +   +     G+   L  +                                         
Sbjct: 60  SRCEIQTIEDGAYQSLSHL---------------------------------------ST 80

Query: 831 IDLSGNNLHGDFPTQLTKLVGLVVLNLSRNHIGGQIPENISGLHQLASLDLSSNNLSGG- 889
           + L+GN +        + L  L  L     ++       I  L  L  L+++ N +    
Sbjct: 81  LILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFK 140

Query: 890 IPSSLSSLSFLGYINLSRNQLSGKIP 915
           +P   S+L+ L +++LS N++     
Sbjct: 141 LPEYFSNLTNLEHLDLSSNKIQSIYC 166

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score =  273 bits (699), Expect = 3e-80
 Identities = 87/638 (13%), Positives = 186/638 (29%), Gaps = 93/638 (14%)

Query: 117 LGSLENLQYLNLSEAGFTGVVPSSLGNLHRLQYFDVSAELFALSADSLDWLTGLVSLKHL 176
           L S   +  L+L   G +G VP ++G L  L+   +                        
Sbjct: 77  LNSNGRVTGLSLEGFGASGRVPDAIGQLTELEVLALG----------------------- 113

Query: 177 AMNRVDLSLVGSEWLGILKNLPNLT---ELHLSVCGLTGSI-TSITPVNLTSPAVLDLSL 232
                      +E L   K +       +          +        + +      ++ 
Sbjct: 114 -----SHGEKVNERLFGPKGISANMSDEQKQKMRMHYQKTFVDYDPREDFSDLIKDCINS 168

Query: 233 NHFNSLFPNWLVNISTLVYVDLSDCDLYGRIPIGFGELPNLQYLSLAGNNNLSGSCSQLF 292
           +                  +     ++   +      L  L+   +  +  ++ +  +  
Sbjct: 169 DPQQKSIKKSSRITLKDTQIGQLSNNITF-VSKAVMRLTKLRQFYMGNSPFVAENICEA- 226

Query: 293 RGSWKKIQILNFASNKLHGKLPSSVANMTSLTNFDLFDKKVEGGIPSSIARLCYLKEFDL 352
                  +  N    + +        N+  LT+ ++++      +P+ +  L  ++  ++
Sbjct: 227 ------WENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINV 280

Query: 353 SGNNLTGSLPEILQGTDLCVSSNSPLPSLISMRLGNNHLK-GKLPEWLSQLENLVELTLS 411
           + N              L  +       +  + +G N+LK   +   L +++ L  L   
Sbjct: 281 ACNRGISGEQLKDDWQAL--ADAPVGEKIQIIYIGYNNLKTFPVETSLQKMKKLGMLECL 338

Query: 412 YNLLQGPIPASLGNLKNLTKLNLPGNQLNGTLPETLGSLPELSVLDVSSNSLTGIISEIH 471
           YN L+G +P + G+   L  LNL  NQ+        G   ++  L  + N L  I +   
Sbjct: 339 YNQLEGKLP-AFGSEIKLASLNLAYNQITEIPANFCGFTEQVENLSFAHNKLKYIPNIFD 397

Query: 472 FSRLSKLKFLGLSSNSF--ILNVSSSWIPPFQVQSLNMRSCQLGPSFPSWLKTQQGVSFL 529
              +S +  +  S N    +   +   + P   + +N+ S                   +
Sbjct: 398 AKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSS-------------------I 438

Query: 530 DFSNASISGPIPNWFWDISSKLSLLNVSLNQLQGQLPNPLNIAPFADVDFRSNLLEGPIP 589
           + SN  IS      F   S  LS +N+  N L     N L        +           
Sbjct: 439 NLSNNQISKFPKELFSTGSP-LSSINLMGNMLTEIPKNSLKDENENFKNTYL-------- 489

Query: 590 LPIVEIELLDLSNNHFSGPIPQNISGSMPNLIFLSVSGNRLTGKIPGSIGEMQLLQVI-- 647
                +  +DL  N  +       + ++P L+ + +S N  +   P        L+    
Sbjct: 490 -----LTSIDLRFNKLTKLSDDFRATTLPYLVGIDLSYNSFSK-FPTQPLNSSTLKGFGI 543

Query: 648 ----DLSRNSISGSISSSIGNCTFLKVLDLSYSSLSGVIPASLGQLTRLQSLHLNNNKLT 703
               D   N         I  C  L  L +  + +   +   +     +  L + +N   
Sbjct: 544 RNQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDIRK-VNEKI--TPNISVLDIKDNPNI 600

Query: 704 GNLPSSFQNLTSLETLDLGNNRFSGNIPSLLGNGFVGL 741
               S            L  +        + G   + +
Sbjct: 601 SIDLSYVCPYIEAGMYMLFYD----KTQDIRGCDALDI 634

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score =  264 bits (678), Expect = 4e-77
 Identities = 106/703 (15%), Positives = 203/703 (28%), Gaps = 161/703 (22%)

Query: 229 DLSLNHFNSLFPNWLVNISTLVYVDLSDCDLYGRIPIGFGELPNLQYLSLAGNNNLSGSC 288
           +  L+ + +     L +   +  + L      GR+P   G+L  L+ L+L  +       
Sbjct: 63  NKELDMWGAQPGVSLNSNGRVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNER 122

Query: 289 SQLFR--GSWKKIQILNFASNKLHGKLPSSVA--NMTSLTNFDLFDKKVEGGIPSSIARL 344
               +   +    +                    + + L    +     +  I  S    
Sbjct: 123 LFGPKGISANMSDEQKQKMRMHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKKSSRIT 182

Query: 345 CYLKEFDLSGNNLTGSLPEILQGTDLCVSSNSPLPSLISMRLGNNHLKGKLPEWLSQLEN 404
               +     NN+T     +++           L  L    +GN+    +      + EN
Sbjct: 183 LKDTQIGQLSNNITFVSKAVMR-----------LTKLRQFYMGNSPFVAENICEAWENEN 231

Query: 405 LVELTLSYNLLQGPIPASLGNLKNLTKLNLPGNQLNGTLPETLGSLPELSVLDVSSNSLT 464
                  Y            NLK+LT + +        LP  L +LPE+ +++V+ N   
Sbjct: 232 S-----EYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACN--- 283

Query: 465 GIISEIHFSRLSKLKFLGLSSNSFILNVSSSWIPPFQVQSLNMRSCQLGPSFPSWLKTQQ 524
                         + +            +      ++Q + +    L            
Sbjct: 284 --------------RGISGEQLKDDWQALADAPVGEKIQIIYIGYNNL------------ 317

Query: 525 GVSFLDFSNASISGPIPNWFWDISSKLSLLNVSLNQLQGQLPNPLNIAPFADVDFRSNLL 584
                       + P+      +  KL +L    NQL+G+LP   +            L 
Sbjct: 318 -----------KTFPVETSLQKMK-KLGMLECLYNQLEGKLPAFGSE---------IKL- 355

Query: 585 EGPIPLPIVEIELLDLSNNHFSGPIPQNISGSMPNLIFLSVSGNRLTGKIP--GSIGEMQ 642
                        L+L+ N  +  IP N  G    +  LS + N+L   IP       + 
Sbjct: 356 -----------ASLNLAYNQITE-IPANFCGFTEQVENLSFAHNKLKY-IPNIFDAKSVS 402

Query: 643 LLQVIDLSRNSISG-------SISSSIGNCTFLKVLDLSYSSLSGVIPASLGQLTRLQSL 695
           ++  ID S N I          +  +      +  ++LS + +S          + L S+
Sbjct: 403 VMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSI 462

Query: 696 HLNNNKLTG-------NLPSSFQNLTSLETLDLGNNRFSGNIPSLLGNGFVGLRILSLRS 748
           +L  N LT        +   +F+N   L ++DL  N+ +                     
Sbjct: 463 NLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFNKLTKLSDDFR-------------- 508

Query: 749 NAFSGEIPSKLSNLSSLQVLDLAENNLTGSIPGSVGDLKAMAHVQNIVKYLLFGRYRGIY 808
                      + L  L  +DL+ N+ +   P    +   +                   
Sbjct: 509 ----------ATTLPYLVGIDLSYNSFSK-FPTQPLNSSTLKGFG--------------- 542

Query: 809 YEENLVINTKGSSKDTPRLFHFIDLSGNNLHGDFPTQLTKLVGLVVLNLSRNHIGGQIPE 868
                             + +  D  GN    ++P  +T    L  L +  N I   + E
Sbjct: 543 ------------------IRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDIRK-VNE 583

Query: 869 NISGLHQLASLDLSSNNLSGGIPSSLSSLSFLGYINLSRNQLS 911
            I     ++ LD+  N       S +      G   L  ++  
Sbjct: 584 KI--TPNISVLDIKDNPNISIDLSYVCPYIEAGMYMLFYDKTQ 624

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score =  249 bits (638), Expect = 1e-71
 Identities = 69/577 (11%), Positives = 159/577 (27%), Gaps = 84/577 (14%)

Query: 373 SSNSPLPSLISMRLGNNHLKGKLPEWLSQLENLVELTLSYNLLQGPIPASLGNLKNLTKL 432
              +   +  +     +    +    L+    +  L+L      G +P ++G L  L  L
Sbjct: 51  GFGTQPGANWNFNKELDMWGAQPGVSLNSNGRVTGLSLEGFGASGRVPDAIGQLTELEVL 110

Query: 433 NLPGNQLNG----TLPETLGSLPELSVLDVSSNSLTGIISEIHFSRLSKLKFLGLSSNSF 488
            L  +          P+ + +                           +  F  L  +  
Sbjct: 111 ALGSHGEKVNERLFGPKGISANMSDEQKQKMRMHYQKTF----VDYDPREDFSDLIKDCI 166

Query: 489 ILNVSSSWIPPFQVQSLNMRSCQLGPSFPSWLKTQQGVSFLDFSNASISGPIPNWFWDIS 548
             +     I      +L                       +   + +I+  +      ++
Sbjct: 167 NSDPQQKSIKKSSRITLKDTQ-------------------IGQLSNNITF-VSKAVMRLT 206

Query: 549 SKLSLLNVSLNQLQGQLPNPLNIAPFADVDFRSNLLEGPIPLPI---VEIELLDLSNNHF 605
             L    +  +    +           + +           L      ++  +++ N   
Sbjct: 207 K-LRQFYMGNSPFVAENICEAWE----NENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPN 261

Query: 606 SGPIPQNISGSMPNLIFLSVSGNRLT--------GKIPGSIGEMQLLQVIDLSRNSI-SG 656
              +P  +  ++P +  ++V+ NR           +        + +Q+I +  N++ + 
Sbjct: 262 LTKLPTFL-KALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKTF 320

Query: 657 SISSSIGNCTFLKVLDLSYSSLSGVIPASLGQLTRLQSLHLNNNKLTGNLPSSFQNLTSL 716
            + +S+     L +L+  Y+ L G +P + G   +L SL+L  N++T    +       +
Sbjct: 321 PVETSLQKMKKLGMLECLYNQLEGKLP-AFGSEIKLASLNLAYNQITEIPANFCGFTEQV 379

Query: 717 ETLDLGNNRFSGNIPSLLGNGFVGLRILSLRSNAFSG-------EIPSKLSNLSSLQVLD 769
           E L   +N+               +  +    N            +        ++  ++
Sbjct: 380 ENLSFAHNKLKYIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSIN 439

Query: 770 LAENNLTGSIPGSVGDLKAMAHV-------QNIVKYLLFGRYRGIYYEENLVINTKGSSK 822
           L+ N ++            ++ +         I K  L            L         
Sbjct: 440 LSNNQISKFPKELFSTGSPLSSINLMGNMLTEIPKNSLKDENENFKNTYLLTS------- 492

Query: 823 DTPRLFHFIDLSGNNLHGDFPT-QLTKLVGLVVLNLSRNHIGGQIPENISGLHQLASLDL 881
                   IDL  N L       + T L  LV ++LS N      P        L    +
Sbjct: 493 --------IDLRFNKLTKLSDDFRATTLPYLVGIDLSYNSFSK-FPTQPLNSSTLKGFGI 543

Query: 882 ------SSNNLSGGIPSSLSSLSFLGYINLSRNQLSG 912
                   N      P  ++    L  + +  N +  
Sbjct: 544 RNQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDIRK 580

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score =  178 bits (453), Expect = 5e-47
 Identities = 60/418 (14%), Positives = 121/418 (28%), Gaps = 48/418 (11%)

Query: 96  SLLEYLDLSFNTFNDIPIPEFLGSLENLQYLNLSEAGFTGVVPSSLGNLHRLQYFDVSA- 154
              E  +  +             +L++L  + +        +P+ L  L  +Q  +V+  
Sbjct: 225 EAWENENSEYAQQYKT-EDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACN 283

Query: 155 --ELFALSADSLDWLTGLVSLKHLAMNRVDLS---LVGSEWLGILKNLPNLTELHLSVCG 209
                    D    L      + +    + +    L        L+ +  L  L      
Sbjct: 284 RGISGEQLKDDWQALADAPVGEKI--QIIYIGYNNLKTFPVETSLQKMKKLGMLECLYNQ 341

Query: 210 LTGSITSITPVNLTSPAVLDLSLNHFNSLFPNWLVNISTLVYVDLSDCDLYGRIPIGF-- 267
           L G + +    +    A L+L+ N    +  N+      +  +  +   L   IP  F  
Sbjct: 342 LEGKLPAFG--SEIKLASLNLAYNQITEIPANFCGFTEQVENLSFAHNKLKY-IPNIFDA 398

Query: 268 GELPNLQYLSLAGNNNLSGSCSQLFR------GSWKKIQILNFASNKLHGKLPSSVANMT 321
             +  +  +     N +     + F            +  +N ++N++        +  +
Sbjct: 399 KSVSVMSAIDF-SYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGS 457

Query: 322 SLTNFDL-------FDKKVEGGIPSSIARLCYLKEFDLSGNNLTGSLPEILQGTDLCVSS 374
            L++ +L         K        +      L   DL  N LT    +    T      
Sbjct: 458 PLSSINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFNKLTKLSDDFRATT------ 511

Query: 375 NSPLPSLISMRLGNNHLKGKLPEWLSQLENLVELTLSYNL------LQGPIPASLGNLKN 428
              LP L+ + L  N      P        L    +               P  +    +
Sbjct: 512 ---LPYLVGIDLSYNSFSK-FPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPS 567

Query: 429 LTKLNLPGNQLNGTLPETLGSLPELSVLDVSSNSLTGIISEIHFSRLSKLKFLGLSSN 486
           LT+L +  N +   + E +   P +SVLD+  N    I    +     +     L  +
Sbjct: 568 LTQLQIGSNDIR-KVNEKI--TPNISVLDIKDNPNISIDLS-YVCPYIEAGMYMLFYD 621

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score =  176 bits (448), Expect = 2e-46
 Identities = 52/434 (11%), Positives = 119/434 (27%), Gaps = 78/434 (17%)

Query: 510 CQLGPSFPSWLKTQQGVSFLDFSNASISGPIPNWFWDISSKLSLLNVSLNQLQGQLPNPL 569
              G      L +   V+ L       SG +P+    ++  L +L +  +  +       
Sbjct: 67  DMWGAQPGVSLNSNGRVTGLSLEGFGASGRVPDAIGQLTE-LEVLALGSHGEKVNERLFG 125

Query: 570 -----NIAPFADVDFRSNLLEGPIPLPIVEIELLDLSNNHFS-----GPIPQNISGSMPN 619
                               +          +  DL  +  +       I ++       
Sbjct: 126 PKGISANMSDEQKQKMRMHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKKSS-RITLK 184

Query: 620 LIFLSVSGNRLTGKIPGSIGEMQLLQVIDLSRNSISGSISSSIGNCTFLKVLDLSYSSLS 679
              +    N +T  +  ++  +  L+   +  +                   +  Y+   
Sbjct: 185 DTQIGQLSNNITF-VSKAVMRLTKLRQFYMGNSPFVAENICEAWEN-----ENSEYAQQY 238

Query: 680 GVIPASLGQLTRLQSLHLNNNKLTGNLPSSFQNLTSLETLDLGNNRF--------SGNIP 731
                    L  L  + + N      LP+  + L  ++ +++  NR              
Sbjct: 239 KTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQAL 298

Query: 732 SLLGNGFVGLRILSLRSNAF-SGEIPSKLSNLSSLQVLDLAENNLTGSIPGSVGDLKAMA 790
           +    G   ++I+ +  N   +  + + L  +  L +L+   N L G +P + G      
Sbjct: 299 ADAPVG-EKIQIIYIGYNNLKTFPVETSLQKMKKLGMLECLYNQLEGKLP-AFGSEI--- 353

Query: 791 HVQNIVKYLLFGRYRGIYYEENLVINTKGSSKDTPRLFHFIDLSGNNLHGDFPTQLTKLV 850
                                 L                 ++L+ N +            
Sbjct: 354 ---------------------KLAS---------------LNLAYNQITEIPANFCGFTE 377

Query: 851 GLVVLNLSRNHIGGQIPEN--ISGLHQLASLDLSSNNLSG-------GIPSSLSSLSFLG 901
            +  L+ + N +   IP       +  ++++D S N +          +  +      + 
Sbjct: 378 QVENLSFAHNKLKY-IPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVS 436

Query: 902 YINLSRNQLSGKIP 915
            INLS NQ+S    
Sbjct: 437 SINLSNNQISKFPK 450

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score =  175 bits (446), Expect = 4e-46
 Identities = 77/601 (12%), Positives = 153/601 (25%), Gaps = 151/601 (25%)

Query: 83  GNPYHVVNSDSSGSLLEYLDLSFNTFNDIPIPEFLGSLENLQYLNLSEAGFTGVVPSSLG 142
            +P       SS   L+   +   + N   + + +  L  L+   +  + F         
Sbjct: 168 SDPQQKSIKKSSRITLKDTQIGQLSNNITFVSKAVMRLTKLRQFYMGNSPFVAENICEAW 227

Query: 143 NLHRLQYFDVSAELFALSADSLDWLTGLVSLKHLAMNRVDLSLVGSEWLGILKNLPNLTE 202
                +Y                                DL            NL +LT+
Sbjct: 228 ENENSEYAQQYKTE-------------------------DLK---------WDNLKDLTD 253

Query: 203 LHLSVCGLTGSI-TSITPVNLTSPAVLDLSLNHFNSLFPNWLVNISTLVYVDLSDCDLYG 261
           + +  C     + T +    L    +++++ N   S                        
Sbjct: 254 VEVYNCPNLTKLPTFL--KALPEMQLINVACNRGISGEQL----------------KDDW 295

Query: 262 RIPIGFGELPNLQYLSLAGNNNLSGSCSQLFRGSWKKIQILNFASNKLHGKLPSSVANMT 321
           +          +Q + +  NN  +           KK+ +L    N+L G    +  +  
Sbjct: 296 QALADAPVGEKIQIIYIGYNNLKTFPVETSL-QKMKKLGMLECLYNQLEG-KLPAFGSEI 353

Query: 322 SLTNFDLFDKKVEGGIPSSIARLCYLKEFDLSGNNLTGSLPEILQGTDLCVSSNSPLPSL 381
            L + +L   ++     +       ++    + N L   +P I             +  +
Sbjct: 354 KLASLNLAYNQITEIPANFCGFTEQVENLSFAHNKLK-YIPNIF--------DAKSVSVM 404

Query: 382 ISMRLGNNHLKG-------KLPEWLSQLENLVELTLSYNLLQGPIPASLGNLKNLTKLNL 434
            ++    N +          L     +  N+  + LS N +             L+ +NL
Sbjct: 405 SAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINL 464

Query: 435 PGNQLNG-------TLPETLGSLPELSVLDVSSNSLTGIISEIHFSRLSKLKFLGLSSNS 487
            GN L            E   +   L+ +D+  N LT +  +   + L  L  + LS NS
Sbjct: 465 MGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFNKLTKLSDDFRATTLPYLVGIDLSYNS 524

Query: 488 FILNVSSSWIPPFQVQSLNMRSCQLGPSFPSWLKTQQGVSFLDFSNASISGPIPNWFWDI 547
           F      S  P   + S  ++   +              +  D          P      
Sbjct: 525 F------SKFPTQPLNSSTLKGFGIR-------------NQRDAQGNRTLREWPEGI--- 562

Query: 548 SSKLSLLNVSLNQLQGQLPNPLNIAPFADVDFRSNLLEGPIPLPIVEIELLDLSNNHFSG 607
                             P+                           +  L + +N    
Sbjct: 563 ---------------TLCPS---------------------------LTQLQIGSNDIRK 580

Query: 608 PIPQNISGSMPNLIFLSVSGNRLTGKIPGSIGEMQLLQVIDLSRNSISGSISSSIGNCTF 667
            + + I    PN+  L +  N         +       +  L  +         I  C  
Sbjct: 581 -VNEKI---TPNISVLDIKDNPNISIDLSYVCPYIEAGMYMLFYDKT-----QDIRGCDA 631

Query: 668 L 668
           L
Sbjct: 632 L 632

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score =  102 bits (255), Expect = 2e-22
 Identities = 37/271 (13%), Positives = 62/271 (22%), Gaps = 56/271 (20%)

Query: 653 SISGSISSSIGNCTFLKVLDLSYSSLSGVIPASLGQLTRLQSLHLNNNKLTGNLPSSFQN 712
           S  G  +    N  F K LD+           SL    R+  L L     +G +P +   
Sbjct: 48  SQQGFGTQPGANWNFNKELDMW----GAQPGVSLNSNGRVTGLSLEGFGASGRVPDAIGQ 103

Query: 713 LTSLETLDLGNNRFSGN----IPSLLGNGFVGLRILSLRSNAFSGEIPSKLS--NLSSLQ 766
           LT LE L LG++    N     P  +    +           +           + S L 
Sbjct: 104 LTELEVLALGSHGEKVNERLFGPKGISA-NMSDEQKQKMRMHYQKTFVDYDPREDFSDLI 162

Query: 767 VLDLAENNLTGSIPGSVGDLKAMAHVQNIVKYLLFGRYRGIYYEENLVINTKGSSKDTPR 826
              +  +    SI  S                                            
Sbjct: 163 KDCINSDPQQKSIKKSSRITLKDTQ----------------------------------- 187

Query: 827 LFHFIDLSGNNLHGDFPTQLTKLVGLVVLNLSRNHIGGQIPENISGLHQLASLDLSSNNL 886
               I    NN+       + +L  L    +  +    +              +      
Sbjct: 188 ----IGQLSNNITF-VSKAVMRLTKLRQFYMGNSPFVAENICEAWEN-----ENSEYAQQ 237

Query: 887 SGGIPSSLSSLSFLGYINLSRNQLSGKIPFE 917
                    +L  L  + +       K+P  
Sbjct: 238 YKTEDLKWDNLKDLTDVEVYNCPNLTKLPTF 268

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  258 bits (662), Expect = 3e-75
 Identities = 118/599 (19%), Positives = 197/599 (32%), Gaps = 77/599 (12%)

Query: 321 TSLTNFDLFDKKVEGGIPSSIARLCYLKEFDLSGNNLTGSLPEILQGTDLCVSSNSPLPS 380
            S    +     +     ++ +RL  L   DL+   +     +  Q              
Sbjct: 33  NSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQS----------QHR 82

Query: 381 LISMRLGNNHLKGKLPEWLSQLENLVELTLSYNLLQGPIPASLGNLKNLTKLNLPGNQLN 440
           L ++ L  N L       LS  + L  L      +       L N K L  L L  N ++
Sbjct: 83  LDTLVLTANPLIFMAETALSGPKALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHIS 142

Query: 441 GTLPETLGSLPELSVLDVSSNSLTGIISEIHFSRLSKLKFLGLS-SNSFILNVSSSWIPP 499
                      +L VLD  +N++  +  E   S L +   L L+ + + I  +       
Sbjct: 143 SIKLPKGFPTEKLKVLDFQNNAIHYLSKED-MSSLQQATNLSLNLNGNDIAGIEPGAFDS 201

Query: 500 FQVQSLNMRSCQLGPSFPSWLKTQQGVS--FLDFSNASISGPIPNWFWDIS-SKLSLLNV 556
              QSLN    Q        LK     S     F +       P  F  +    +  +N+
Sbjct: 202 AVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINL 261

Query: 557 SLNQLQGQLPNPLNIAPFADVDFRSNLLEGPIPLPIVEIELLDLSNNHFSGPIPQNISGS 616
             +       N  +                        ++ LDL+  H S  +P  + G 
Sbjct: 262 QKHYFFNISSNTFH--------------------CFSGLQELDLTATHLSE-LPSGLVG- 299

Query: 617 MPNLIFLSVSGNRLTGKIPGSIGEMQLLQVIDLSRNSISGSI-SSSIGNCTFLKVLDLSY 675
           +  L  L +S N+       S      L  + +  N+    + +  + N   L+ LDLS+
Sbjct: 300 LSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSH 359

Query: 676 SSL--SGVIPASLGQLTRLQSLHLNNNKLTGNLPSSFQNLTSLETLDLGNNRFSGNIPSL 733
             +  S      L  L+ LQSL+L+ N+       +F+    LE LDL   R        
Sbjct: 360 DDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQS 419

Query: 734 LGNGFVGLRILSLRSNAFSGEIPSKLSNLSSLQVLDLAENNLTGSIPGSVGDLKAMAHVQ 793
                  L++L+L  +            L +LQ L+L  N+           L+ +  ++
Sbjct: 420 PFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLE 479

Query: 794 NIVKYLLFGRYRGIYYEENLVINTKGSSKDTPRLFHFIDLSGNNLHGDFPTQLTKLVGLV 853
                                                + LS  +L        T L  + 
Sbjct: 480 ------------------------------------ILVLSFCDLSSIDQHAFTSLKMMN 503

Query: 854 VLNLSRNHIGGQIPENISGLHQLASLDLSSNNLSGGIPSSLSSLSFLGYINLSRNQLSG 912
            ++LS N +     E +S L  +  L+L+SN++S  +PS L  LS    INL +N L  
Sbjct: 504 HVDLSHNRLTSSSIEALSHLKGI-YLNLASNHISIILPSLLPILSQQRTINLRQNPLDC 561

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  242 bits (620), Expect = 2e-69
 Identities = 109/588 (18%), Positives = 185/588 (31%), Gaps = 76/588 (12%)

Query: 345 CYLKEFDLSGNNLTGSLPEILQGTDLCVSSNSPLPSLISMRLGNNHLKGKLPEWLSQLEN 404
              K ++     L   +P  L              S   +    N L        S+L N
Sbjct: 12  EVNKTYNCENLGLN-EIPGTL------------PNSTECLEFSFNVLPTIQNTTFSRLIN 58

Query: 405 LVELTLSYNLLQGPIPASLGNLKNLTKLNLPGNQLNGTLPETLGSLPELSVLDVSSNSLT 464
           L  L L+   +      +  +   L  L L  N L       L     L  L      ++
Sbjct: 59  LTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLFFIQTGIS 118

Query: 465 GIISEIHFSRLSKLKFLGLSSNSFILNVSSSWIPPFQVQSLNMRSCQLGPSFPSWLKTQQ 524
            I           L+ L L SN           P  +++ L+ ++  +       + + Q
Sbjct: 119 SIDFI-PLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQ 177

Query: 525 G--VSFLDFSNASISGPIPNWFWDISSKLSLLNVSLNQLQGQLPNPLNIAPFAD---VDF 579
                 L+ +   I+G  P  F   S+    LN    Q    +   L  +         F
Sbjct: 178 QATNLSLNLNGNDIAGIEPGAF--DSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTF 235

Query: 580 RSNLLEGPIPLPIVE-----IELLDLSNNHFSGPIPQNISGSMPNLIFLSVSGNRLTGKI 634
                E   P          +E ++L  ++F   I  N       L  L ++   L+ ++
Sbjct: 236 EDMDDEDISPAVFEGLCEMSVESINLQKHYFFN-ISSNTFHCFSGLQELDLTATHLS-EL 293

Query: 635 PGSIGEMQLLQVIDLSRNSISGSISSSIGNCTFLKVLDLSYSSLSGVI-PASLGQLTRLQ 693
           P  +  +  L+ + LS N        S  N   L  L +  ++    +    L  L  L+
Sbjct: 294 PSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLR 353

Query: 694 SLHLNNNKLT--GNLPSSFQNLTSLETLDLGNNRFSGNIPSLLGNGFVGLRILSLRSNAF 751
            L L+++ +          +NL+ L++L+L  N                L +L L     
Sbjct: 354 ELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKE-CPQLELLDLAFTRL 412

Query: 752 SG-EIPSKLSNLSSLQVLDLAENNLTGSIPGSVGDLKAMAHVQNIVKYLLFGRYRGIYYE 810
              +  S   NL  L+VL+L+ + L  S       L                        
Sbjct: 413 KVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLP----------------------- 449

Query: 811 ENLVINTKGSSKDTPRLFHFIDLSGNNLHG---DFPTQLTKLVGLVVLNLSRNHIGGQIP 867
             L                 ++L GN+           L  L  L +L LS   +     
Sbjct: 450 -ALQH---------------LNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQ 493

Query: 868 ENISGLHQLASLDLSSNNLSGGIPSSLSSLSFLGYINLSRNQLSGKIP 915
              + L  +  +DLS N L+     +LS L  + Y+NL+ N +S  +P
Sbjct: 494 HAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGI-YLNLASNHISIILP 540

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  241 bits (618), Expect = 3e-69
 Identities = 104/585 (17%), Positives = 175/585 (29%), Gaps = 100/585 (17%)

Query: 337 IPSSIARLCYLKEFDLSGNNLTGSLPEILQGTDLCVSSNSPLPSLISMRLGNNHLKGKLP 396
           IP ++      +  + S N L                    L +L  + L    +     
Sbjct: 27  IPGTLPN--STECLEFSFNVLPTIQNTTFSR----------LINLTFLDLTRCQIYWIHE 74

Query: 397 EWLSQLENLVELTLSYNLLQGPIPASLGNLKNLTKLNLPGNQLNGTLPETLGSLPELSVL 456
           +       L  L L+ N L      +L   K L  L      ++      L +   L  L
Sbjct: 75  DTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLFFIQTGISSIDFIPLHNQKTLESL 134

Query: 457 DVSSNSLTGIISEIHFSRLSKLKFLGLSSNSFILNVSSSWIPPFQVQSLNMRSCQLGPSF 516
            + SN ++ I          KLK L   +N+        ++    + SL           
Sbjct: 135 YLGSNHISSIKLPK-GFPTEKLKVLDFQNNAI------HYLSKEDMSSL----------- 176

Query: 517 PSWLKTQQGVSFLDFSNASISGPIPNWFWDISSKLSLLNVSLNQLQGQLPNPLNIAPFAD 576
                 Q     L+ +   I+G  P  F   S+    LN    Q    +   L       
Sbjct: 177 -----QQATNLSLNLNGNDIAGIEPGAF--DSAVFQSLNFGGTQNLLVIFKGLK------ 223

Query: 577 VDFRSNLLEGPIPLPIVEIELLDLSNNHFSGPIPQNISG-SMPNLIFLSVSGNRLTGKIP 635
                          I  + L    +       P    G    ++  +++  +       
Sbjct: 224 ------------NSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFNISS 271

Query: 636 GSIGEMQLLQVIDLSRNSISGSISSSIGNCTFLKVLDLSYSSLSGVIPASLGQLTRLQSL 695
            +      LQ +DL+   +S  + S +   + LK L LS +    +   S      L  L
Sbjct: 272 NTFHCFSGLQELDLTATHLS-ELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHL 330

Query: 696 HLNNNKLTGNLPS-SFQNLTSLETLDLGNNRFSG-NIPSLLGNGFVGLRILSLRSNAFSG 753
            +  N     L +   +NL +L  LDL ++     +  +L       L+ L+L  N    
Sbjct: 331 SIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLS 390

Query: 754 EIPSKLSNLSSLQVLDLAENNLTGSIPGSVGDLKAMAHVQNIVKYLLFGRYRGIYYEENL 813
                      L++LDLA   L      S                  F     +      
Sbjct: 391 LKTEAFKECPQLELLDLAFTRLKVKDAQS-----------------PFQNLHLLKV---- 429

Query: 814 VINTKGSSKDTPRLFHFIDLSGNNLHGDFPTQLTKLVGLVVLNLSRNHIGG---QIPENI 870
                            ++LS + L          L  L  LNL  NH      Q   ++
Sbjct: 430 -----------------LNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSL 472

Query: 871 SGLHQLASLDLSSNNLSGGIPSSLSSLSFLGYINLSRNQLSGKIP 915
             L +L  L LS  +LS     + +SL  + +++LS N+L+    
Sbjct: 473 QTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSI 517

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  236 bits (605), Expect = 2e-67
 Identities = 103/594 (17%), Positives = 207/594 (34%), Gaps = 49/594 (8%)

Query: 192 GILKNLPNLTELHLSVCGLTGSITSITPVNLTSPAVLDLSLNHFNSLFPNWLVNISTLVY 251
                L NLT L L+ C +   I   T  +      L L+ N    +    L     L +
Sbjct: 51  TTFSRLINLTFLDLTRCQIY-WIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKH 109

Query: 252 VDLSDCDLYGRIPIGFGELPNLQYLSLAGNNNLSGSCSQLFRGSWKKIQILNFASNKLHG 311
           +      +     I       L+ L L  +N++S         + +K+++L+F +N +H 
Sbjct: 110 LFFIQTGISSIDFIPLHNQKTLESLYLG-SNHISSIKLPKGFPT-EKLKVLDFQNNAIHY 167

Query: 312 KLPSSVANMTSLTNFDLFDKKVE-GGIPSSIARLCYLKEFDLSGNNLTGSLPEILQGTDL 370
                ++++   TN  L     +  GI          +  +  G      + + L     
Sbjct: 168 LSKEDMSSLQQATNLSLNLNGNDIAGIEPGAFDSAVFQSLNFGGTQNLLVIFKGL----- 222

Query: 371 CVSSNSPLPSLISMRLGNNHLKGKLPEWLSQLE--NLVELTLSYNLLQGPIPASLGNLKN 428
               NS + SL      +   +   P     L   ++  + L  +        +      
Sbjct: 223 ---KNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFNISSNTFHCFSG 279

Query: 429 LTKLNLPGNQLNGTLPETLGSLPELSVLDVSSNSLTGIISEIHFSRLSKLKFLGLSSNSF 488
           L +L+L    L+  LP  L  L  L  L +S+N    +      S    L  L +  N+ 
Sbjct: 280 LQELDLTATHLS-ELPSGLVGLSTLKKLVLSANKFENLCQIS-ASNFPSLTHLSIKGNTK 337

Query: 489 ILNVSSSWIPPF-QVQSLNMRSCQLG--PSFPSWLKTQQGVSFLDFSNASISGPIPNWFW 545
            L + +  +     ++ L++    +         L+    +  L+ S           F 
Sbjct: 338 RLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFK 397

Query: 546 DISSKLSLLNVSLNQLQGQLPNPLNIAPFADVDFRSNLLEGPIPLPIVEIELLDLSNNHF 605
           +    L LL+++  +L+ +       +PF ++     L              L+LS++  
Sbjct: 398 ECPQ-LELLDLAFTRLKVKDAQ----SPFQNL---HLLKV------------LNLSHSLL 437

Query: 606 SGPIPQNISGSMPNLIFLSVSGNRLTGKI---PGSIGEMQLLQVIDLSRNSISGSISSSI 662
                + +   +P L  L++ GN           S+  +  L+++ LS   +S     + 
Sbjct: 438 DI-SSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAF 496

Query: 663 GNCTFLKVLDLSYSSLSGVIPASLGQLTRLQSLHLNNNKLTGNLPSSFQNLTSLETLDLG 722
            +   +  +DLS++ L+     +L  L  +  L+L +N ++  LPS    L+   T++L 
Sbjct: 497 TSLKMMNHVDLSHNRLTSSSIEALSHLKGIY-LNLASNHISIILPSLLPILSQQRTINLR 555

Query: 723 NNRFSGNIPSLLGNGFVGLRILSLRSNAFSGEIPSKLSNLSSLQVLDLAENNLT 776
            N       ++    F  L               +   N   L+ + L++  L+
Sbjct: 556 QNPLDCTCSNI---YF--LEWYKENMQKLEDTEDTLCENPPLLRGVRLSDVTLS 604

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  234 bits (598), Expect = 2e-66
 Identities = 108/585 (18%), Positives = 198/585 (33%), Gaps = 46/585 (7%)

Query: 202 ELHLSVCGLTGSITSITPVNLTSPAVLDLSLNHFNSLFPNWLVNISTLVYVDLSDCDLYG 261
             +    GL   I    P +      L+ S N   ++       +  L ++DL+ C +Y 
Sbjct: 16  TYNCENLGLN-EIPGTLPNSTEC---LEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYW 71

Query: 262 RIPIGFGELPNLQYLSLAGNNNLSGSCSQLFRGSWKKIQILNFASNKLHGKLPSSVANMT 321
                F     L  L L   N L         G  K ++ L F    +       + N  
Sbjct: 72  IHEDTFQSQHRLDTLVLT-ANPLIFMAETALSGP-KALKHLFFIQTGISSIDFIPLHNQK 129

Query: 322 SLTNFDLFDKKVEGGIPSSIARLCYLKEFDLSGNNLTGSLPEILQGTDLCVSSNSPLPSL 381
           +L +  L    +             LK  D   N +     E +        S+    + 
Sbjct: 130 TLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDM--------SSLQQATN 181

Query: 382 ISMRLGNNHLKGKLPEWLSQLENLVELTLSYNLLQGPIPASLGN--LKNLTKLNLPGNQL 439
           +S+ L  N + G +            L          I   L N  +++L          
Sbjct: 182 LSLNLNGNDIAG-IEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDD 240

Query: 440 NGTLPETLGSLPELSV--LDVSSNSLTGIISEIHFSRLSKLKFLGLSSNSFILNVSSSWI 497
               P     L E+SV  +++  +    I S   F   S L+ L L++   +  + S  +
Sbjct: 241 EDISPAVFEGLCEMSVESINLQKHYFFNISSNT-FHCFSGLQELDLTATH-LSELPSGLV 298

Query: 498 PPFQVQSLNMRSCQLGPSFPSWLKTQQGVSFLDFSNASISGPIPNWFWDISSKLSLLNVS 557
               ++ L + + +              ++ L     +    +     +    L  L++S
Sbjct: 299 GLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLS 358

Query: 558 LNQLQGQLPNPLNIAPFADVDFRSNLLEGPIPLPIVEIELLDLSNNHFSGPIPQNISGSM 617
            + ++               D  +  L       +  ++ L+LS N     +        
Sbjct: 359 HDDIET-------------SDCCNLQLRN-----LSHLQSLNLSYNEPLS-LKTEAFKEC 399

Query: 618 PNLIFLSVSGNRLTGKIPGSI-GEMQLLQVIDLSRNSISGSISSSIGNCTFLKVLDLSYS 676
           P L  L ++  RL  K   S    + LL+V++LS + +  S          L+ L+L  +
Sbjct: 400 PQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGN 459

Query: 677 SLSGVI---PASLGQLTRLQSLHLNNNKLTGNLPSSFQNLTSLETLDLGNNRFSGNIPSL 733
                      SL  L RL+ L L+   L+     +F +L  +  +DL +NR + +    
Sbjct: 460 HFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEA 519

Query: 734 LGNGFVGLRILSLRSNAFSGEIPSKLSNLSSLQVLDLAENNLTGS 778
           L +  +    L+L SN  S  +PS L  LS  + ++L +N L  +
Sbjct: 520 LSH--LKGIYLNLASNHISIILPSLLPILSQQRTINLRQNPLDCT 562

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  185 bits (471), Expect = 1e-49
 Identities = 109/633 (17%), Positives = 200/633 (31%), Gaps = 114/633 (18%)

Query: 98  LEYLDLSFNTFNDIPIPEFLGSLENLQYLNLSEAGFTGVVPSSLGNLHRLQYFDVSAELF 157
           L+ L L+ N    +     L   + L++L   + G + +    L N   L+         
Sbjct: 83  LDTLVLTANPLIFMA-ETALSGPKALKHLFFIQTGISSIDFIPLHNQKTLESLY------ 135

Query: 158 ALSADSLDWLTGLVSLKHLAMNRVDLSLVGSEWLGILKNLPNLTELHLSVCGLTGSITSI 217
                             L  N   +S +    L        L  L      +   ++  
Sbjct: 136 ------------------LGSNH--ISSIK---LPKGFPTEKLKVLDFQNNAIH-YLSKE 171

Query: 218 TPVNLTSPAVLDLSLNHFNSLFPNWLVNISTLVYVDLSDCDLYGRIPIGFGELPNLQYLS 277
              +L     L L+LN  N +                        I  G  +    Q L+
Sbjct: 172 DMSSLQQATNLSLNLNG-NDI----------------------AGIEPGAFDSAVFQSLN 208

Query: 278 LAGNNNLSGSCSQLFRGSWKKIQILNFASNKLHGKLPSSVANMTSLTNFDLFDKKVEGGI 337
             G  NL      L   + + + +  F         P+    +  ++             
Sbjct: 209 FGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMS------------- 255

Query: 338 PSSIARLCYLKEFDLSGNNLTGSLPEILQGTDLCVSSNSPLPSLISMRLGNNHLKGKLPE 397
                    ++  +L  +                         L  + L   HL  +LP 
Sbjct: 256 ---------VESINLQKHYFFNISSNTFHC----------FSGLQELDLTATHLS-ELPS 295

Query: 398 WLSQLENLVELTLSYNLLQGPIPASLGNLKNLTKLNLPGNQLNGTL-PETLGSLPELSVL 456
            L  L  L +L LS N  +     S  N  +LT L++ GN     L    L +L  L  L
Sbjct: 296 GLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLREL 355

Query: 457 DVSSNSLTGI-ISEIHFSRLSKLKFLGLSSNSFILNVSSSWIPPFQVQSLNMRSCQL-GP 514
           D+S + +       +    LS L+ L LS N  +   + ++    Q++ L++   +L   
Sbjct: 356 DLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVK 415

Query: 515 SFPSWLKTQQGVSFLDFSNASISGPIPNWFWDISSKLSLLNVSLNQLQGQLPNPLNIAPF 574
              S  +    +  L+ S++ +       F  + + L  LN+  N          N    
Sbjct: 416 DAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPA-LQHLNLQGNHFPKGNIQKTNS--L 472

Query: 575 ADVDFRSNLLEGPIPLPIVEIELLDLSNNHFSGPIPQNISGSMPNLIFLSVSGNRLTGKI 634
             +     L            E+L LS    S  I Q+   S+  +  + +S NRLT   
Sbjct: 473 QTL---GRL------------EILVLSFCDLSS-IDQHAFTSLKMMNHVDLSHNRLTSSS 516

Query: 635 PGSIGEMQLLQVIDLSRNSISGSISSSIGNCTFLKVLDLSYSSLSGVIPASLGQLTRLQS 694
             ++  ++ +  ++L+ N IS  + S +   +  + ++L  + L          +  L+ 
Sbjct: 517 IEALSHLKGI-YLNLASNHISIILPSLLPILSQQRTINLRQNPLDCTCSN----IYFLEW 571

Query: 695 LHLNNNKLTGNLPSSFQNLTSLETLDLGNNRFS 727
              N  KL     +  +N   L  + L +   S
Sbjct: 572 YKENMQKLEDTEDTLCENPPLLRGVRLSDVTLS 604

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  125 bits (315), Expect = 9e-30
 Identities = 81/364 (22%), Positives = 128/364 (35%), Gaps = 68/364 (18%)

Query: 83  GNPYHVVNSDSSGSL--LEYLDLSFNTFNDIPIPEFLGSLENLQYLNLSEAGFTGVVPSS 140
            + +  ++S++      L+ LDL+    +++P    L  L  L+ L LS   F  +   S
Sbjct: 263 KHYFFNISSNTFHCFSGLQELDLTATHLSELP--SGLVGLSTLKKLVLSANKFENLCQIS 320

Query: 141 LGNLHRLQYFDVSAELFALSADSLDWLTGLVSLKHLAMNRVDLSLVGSEWLGILKNLPNL 200
             N   L +                          +  N   L L      G L+NL NL
Sbjct: 321 ASNFPSLTHLS------------------------IKGNTKRLELG----TGCLENLENL 352

Query: 201 TELHLSVCGLTGS-ITSITPVNLTSPAVLDLSLNHFNSLFPNWLVNISTLVYVDLSDCDL 259
            EL LS   +  S   ++   NL+    L+LS N   SL          L  +DL+   L
Sbjct: 353 RELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRL 412

Query: 260 YGRIPIG-FGELPNLQYLSLAGNNNLSGSCSQLFRGSWKKIQILNFASNKLHGKLPSSVA 318
             +     F  L  L+ L+L+ ++ L  S  QLF G    +Q LN   N           
Sbjct: 413 KVKDAQSPFQNLHLLKVLNLS-HSLLDISSEQLFDGL-PALQHLNLQGNHFPKGNIQKTN 470

Query: 319 NMTSLTNFDLFDKKVEGGIPSSIARLCYLKEFDLSGNNLTGSLPEILQGTDLCVSSNSPL 378
           ++ +L                       L+   LS  +L+                   L
Sbjct: 471 SLQTLGR---------------------LEILVLSFCDLSSIDQHAFTS----------L 499

Query: 379 PSLISMRLGNNHLKGKLPEWLSQLENLVELTLSYNLLQGPIPASLGNLKNLTKLNLPGNQ 438
             +  + L +N L     E LS L+ +  L L+ N +   +P+ L  L     +NL  N 
Sbjct: 500 KMMNHVDLSHNRLTSSSIEALSHLKGIY-LNLASNHISIILPSLLPILSQQRTINLRQNP 558

Query: 439 LNGT 442
           L+ T
Sbjct: 559 LDCT 562

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score =  245 bits (628), Expect = 1e-68
 Identities = 92/651 (14%), Positives = 188/651 (28%), Gaps = 93/651 (14%)

Query: 101 LDLSFNTFNDIPIPEFLGSLENLQYLNLSEAGFTGVVPSSLGNLHRLQYFDVSAELFALS 160
            +   + + D P    L +   +  L+L+  G  G VP ++G L  L+          +S
Sbjct: 304 FNKELDMWGDQP-GVDLDNNGRVTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVS 362

Query: 161 ADSLDWLTGLVSLKHLAMNRVDLSLVGSEWLGILKNLPNLTELHLSVCGLTGSITSITPV 220
                       +     +R+ +          L     L    L    +  +       
Sbjct: 363 GRLFGDEELTPDMSEERKHRIRMHYKKM----FLDYDQRLNLSDLLQDAINRNPEMKPIK 418

Query: 221 NLTSPAVLDLSLNHFNSLFPNWLVNISTLVYVDLSDCDLYGRIPIGFGELPNLQYLSLAG 280
             +  ++ D  + +  +                         I      L  LQ +  A 
Sbjct: 419 KDSRISLKDTQIGNLTNRI---------------------TFISKAIQRLTKLQIIYFA- 456

Query: 281 NNNLSGSCSQLFRGSWKKIQILNFASNKLHGKLPSSVANMTSLTNFDLFDKKVEGGIPSS 340
           N+  +     +        +  N    K +     S +N+  LT+ +L++      +P  
Sbjct: 457 NSPFTYDNIAVD------WEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDF 510

Query: 341 IARLCYLKEFDLSGNNLTGSLPEILQGTDLCVSSNSPLPSLISMRLGNNHLKG-KLPEWL 399
           +  L  L+  +++ N    +       T L        P +    +G N+L+       L
Sbjct: 511 LYDLPELQSLNIACNRGISAAQLKADWTRL-ADDEDTGPKIQIFYMGYNNLEEFPASASL 569

Query: 400 SQLENLVELTLSYNLLQGPIPASLGNLKNLTKLNLPGNQLNGTLPETLGSLPELSVLDVS 459
            ++  L  L   +N ++  +  + G    LT L L  NQ+     +      ++  L  S
Sbjct: 570 QKMVKLGLLDCVHNKVRH-LE-AFGTNVKLTDLKLDYNQIEEIPEDFCAFTDQVEGLGFS 627

Query: 460 SNSLTGIISEIHFSRLSKLKFLGLSSNSFILNVSSSWIPPFQVQSLNMRSCQLGPSFPSW 519
            N L  I +  +   +  +  +  S N       +        + +N  +          
Sbjct: 628 HNKLKYIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINAST---------- 677

Query: 520 LKTQQGVSFLDFSNASISGPIPNWFWDISSKLSLLNVSLNQLQGQLPNPLNIAPFADVDF 579
                    +  S   I       F   S  +S + +S N +     N L        + 
Sbjct: 678 ---------VTLSYNEIQKFPTELFATGSP-ISTIILSNNLMTSIPENSLKPKDGNYKNT 727

Query: 580 RSNLLEGPIPLPIVEIELLDLSNNHFSGPIPQNISGSMPNLIFLSVSGNRLTGKIPGSIG 639
                          +  +DL  N  +       + ++P L  + VS N  +   P    
Sbjct: 728 YL-------------LTTIDLRFNKLTSLSDDFRATTLPYLSNMDVSYNCFSS-FPTQPL 773

Query: 640 EMQLLQVIDLSRNSISGSISSSIGNCTFLKVLDLSYSSLSGVIPASLGQLTRLQSLHLNN 699
               L+   +                      D   + +    P  +     L  L + +
Sbjct: 774 NSSQLKAFGIRHQ------------------RDAEGNRILRQWPTGITTCPSLIQLQIGS 815

Query: 700 NKLTGNLPSSFQNLTSLETLDLGNNRF-SGNIPSLLGNGFVGLRILSLRSN 749
           N +   +         L  LD+ +N   S ++ S+      G+ +L     
Sbjct: 816 NDIR-KVDEKL--TPQLYILDIADNPNISIDVTSVCPYIEAGMYVLLYDKT 863

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score =  243 bits (622), Expect = 9e-68
 Identities = 95/606 (15%), Positives = 188/606 (31%), Gaps = 102/606 (16%)

Query: 228 LDLSLNHFNSLFPNWLVNISTLVYVDLSDCDLYGRIPIGFGELPNLQYLSLAGN------ 281
            +  L+ +       L N   +  + L+     GR+P   G+L  L+ LS   +      
Sbjct: 304 FNKELDMWGDQPGVDLDNNGRVTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVSG 363

Query: 282 -----------------NNLSGSCSQLFRGSWKKIQILNFASNKLH-----GKLPSSVAN 319
                            + +     ++F    +++ + +   + ++       +      
Sbjct: 364 RLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSDLLQDAINRNPEMKPIKKDSRI 423

Query: 320 MTSLTNFDLFDKKVEGGIPSSIARLCYLKEFDLSGNNLTGSLPEILQGTDLCVSSNSPLP 379
               T       ++   I  +I RL  L+    + +  T     +               
Sbjct: 424 SLKDTQIGNLTNRITF-ISKAIQRLTKLQIIYFANSPFTYDNIAV--------------- 467

Query: 380 SLISMRLGNNHLKGKLPEWLSQLENLVELTLSYNLLQGPIPASLGNLKNLTKLNLPGNQL 439
                               S L++L ++ L        +P  L +L  L  LN+  N+ 
Sbjct: 468 DWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRG 527

Query: 440 NG---------TLPETLGSLPELSVLDVSSNSLTGIISEIHFSRLSKLKFLGLSSNSFIL 490
                       L +   + P++ +  +  N+L    +     ++ KL  L    N    
Sbjct: 528 ISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEEFPASASLQKMVKLGLLDCVHNKV-- 585

Query: 491 NVSSSWIPPF----QVQSLNMRSCQLGPSFPSWLKTQQGVSFLDFSNASISGPIPNWFWD 546
                 +  F    ++  L +   Q+      +      V  L FS+  +   IPN F  
Sbjct: 586 ----RHLEAFGTNVKLTDLKLDYNQIEEIPEDFCAFTDQVEGLGFSHNKLKY-IPNIFNA 640

Query: 547 IS-SKLSLLNVSLNQLQGQLPNPLNIAPFADVDFRSNLLEGPIPLPIVEIELLDLSNNHF 605
            S   +  ++ S N++        NI+   D     N               + LS N  
Sbjct: 641 KSVYVMGSVDFSYNKIGS---EGRNISCSMDDYKGINA------------STVTLSYNEI 685

Query: 606 SGPIPQNISGSMPNLIFLSVSGNRLT-------GKIPGSIGEMQLLQVIDLSRNSISG-S 657
               P  +  +   +  + +S N +T           G+     LL  IDL  N ++  S
Sbjct: 686 QK-FPTELFATGSPISTIILSNNLMTSIPENSLKPKDGNYKNTYLLTTIDLRFNKLTSLS 744

Query: 658 ISSSIGNCTFLKVLDLSYSSLSGVIPASLGQLTRLQSLHL------NNNKLTGNLPSSFQ 711
                    +L  +D+SY+  S   P      ++L++  +        N++    P+   
Sbjct: 745 DDFRATTLPYLSNMDVSYNCFSS-FPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGIT 803

Query: 712 NLTSLETLDLGNNRFSGNIPSLLGNGFVGLRILSLRSNAF-SGEIPSKLSNLSS-LQVLD 769
              SL  L +G+N        L       L IL +  N   S ++ S    + + + VL 
Sbjct: 804 TCPSLIQLQIGSNDIRKVDEKLTPQ----LYILDIADNPNISIDVTSVCPYIEAGMYVLL 859

Query: 770 LAENNL 775
             +   
Sbjct: 860 YDKTQD 865

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score =  222 bits (567), Expect = 1e-60
 Identities = 90/630 (14%), Positives = 183/630 (29%), Gaps = 113/630 (17%)

Query: 302 LNFASNKLHGKLPSSVANMTSLTNFDLFDKKVEGGIPSSIARLCYLKEFDLSGNNLTGSL 361
            N   +    +    + N   +T   L     +G +P +I +L  LK      ++ T S 
Sbjct: 304 FNKELDMWGDQPGVDLDNNGRVTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVSG 363

Query: 362 PEILQGTDLCVSSNSPLPSLISMRLGNNHLKGKLPEWLSQLENLVELTLSYNLLQGPIPA 421
                  D  ++ +        +R+    +     + L+  + L +       ++     
Sbjct: 364 RLF---GDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSDLLQDAINRNPEMKPIKKD 420

Query: 422 SLGNLKNLTKLNLPGNQLNGTLPETLGSLPELSVLDVSSNSLTGIISEIHFSRLSKLKFL 481
           S  +LK+    NL  N++   + + +  L +L ++  +++  T     + +   +     
Sbjct: 421 SRISLKDTQIGNL-TNRI-TFISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDAN----- 473

Query: 482 GLSSNSFILNVSSSWIPPFQVQSLNMRSCQLGPSFPSWLKTQQGVSFLDFSNASISGPIP 541
                    N   SW         N++                    ++  N      +P
Sbjct: 474 -SDYAKQYENEELSW--------SNLKDLT----------------DVELYNCPNMTQLP 508

Query: 542 NWFWDISSKLSLLNVSLNQLQGQLPNPLNIAPFADVDFRSNLLEGPIPLPIVEIELLDLS 601
           ++ +D+   L  LN++ N+         +    AD +     ++           +  + 
Sbjct: 509 DFLYDLPE-LQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQ-----------IFYMG 556

Query: 602 NNHFSGPIPQNISGSMPNLIFLSVSGNRLTGKIPGSIGEMQLLQVIDLSRNSISGSISSS 661
            N+            M  L  L    N++   +  + G    L  + L  N I   I   
Sbjct: 557 YNNLEEFPASASLQKMVKLGLLDCVHNKVR-HLE-AFGTNVKLTDLKLDYNQIE-EIPED 613

Query: 662 IGNCT-FLKVLDLSYSSLSGV-IPASLGQLTRLQSLHLNNNKLTGNLPSSF-----QNLT 714
               T  ++ L  S++ L  +    +   +  + S+  + NK+     +           
Sbjct: 614 FCAFTDQVEGLGFSHNKLKYIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGI 673

Query: 715 SLETLDLGNNRFSGNIPSLLGNGFVGLRILSLRSNAFS-------GEIPSKLSNLSSLQV 767
           +  T+ L  N        L       +  + L +N  +               N   L  
Sbjct: 674 NASTVTLSYNEIQKFPTELFAT-GSPISTIILSNNLMTSIPENSLKPKDGNYKNTYLLTT 732

Query: 768 LDLAENNLTGSIPGSVGDLKAMAHVQNIVKYLLFGRYRGIYYEENLVINTKGSSKDTPRL 827
           +DL  N LT S+                           +                    
Sbjct: 733 IDLRFNKLT-SLSDD----------------FRATTLPYLSN------------------ 757

Query: 828 FHFIDLSGNNLHGDFPTQLTKLVGLVVLNLSR------NHIGGQIPENISGLHQLASLDL 881
              +D+S N     FPTQ      L    +        N I  Q P  I+    L  L +
Sbjct: 758 ---MDVSYNCFSS-FPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQI 813

Query: 882 SSNNLSGGIPSSLSSLSFLGYINLSRNQLS 911
            SN++          L  L   +++ N   
Sbjct: 814 GSNDIRKVDEKLTPQLYIL---DIADNPNI 840

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score =  220 bits (563), Expect = 5e-60
 Identities = 73/629 (11%), Positives = 169/629 (26%), Gaps = 113/629 (17%)

Query: 320 MTSLTNFDLFDKKVEGGIPSSIARLCYLKEFDLSGNNLTGSLPEILQGTDLCVSSNSPLP 379
           +T   N  +  K+    I    A     +  D                       N+   
Sbjct: 251 LTKDANVPIQLKETAEYIKDYKALKAIWEALDGKNWRYYSGTIN-----------NTIHS 299

Query: 380 SLISMRLGNNHLKGKLPEWLSQLENLVELTLSYNLLQGPIPASLGNLKNLTKLNLPGNQL 439
              +     +    +    L     +  L+L+    +G +P ++G L  L  L+   +  
Sbjct: 300 LNWNFNKELDMWGDQPGVDLDNNGRVTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSE 359

Query: 440 NGTLPETLGSLPELSVLDVSSNSLTGIISEIHFSRLSKLKFLGLSSNSFILNVSSSWIPP 499
             +            + +   + +     ++      +L    L  ++   N     I  
Sbjct: 360 TVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSDLLQDAINRNPEMKPIKK 419

Query: 500 FQVQSLNMRSCQLGPSFPSWLKTQQGVSFLDFSNASISGPIPNWFWDISSKLSLLNVSLN 559
               SL                        + +N      I      + +KL ++  + +
Sbjct: 420 DSRISLKD------------------TQIGNLTNRITF--ISKAIQRL-TKLQIIYFANS 458

Query: 560 QLQGQLPNPLNIAPFADVDFRSNLLEGPIPLPI---VEIELLDLSNNHFSGPIPQNISGS 616
                    ++     D +           L      ++  ++L N      +P  +   
Sbjct: 459 PFTY-DNIAVDW---EDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFL-YD 513

Query: 617 MPNLIFLSVSGNRLTG---------KIPGSIGEMQLLQVIDLSRNSISG-SISSSIGNCT 666
           +P L  L+++ NR            ++         +Q+  +  N++     S+S+    
Sbjct: 514 LPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEEFPASASLQKMV 573

Query: 667 FLKVLDLSYSSLSGVIPASLGQLTRLQSLHLNNNKLTGNLPSSFQNLTSLETLDLGNNRF 726
            L +LD  ++ +   +  + G   +L  L L+ N++             +E L   +N+ 
Sbjct: 574 KLGLLDCVHNKVR-HLE-AFGTNVKLTDLKLDYNQIEEIPEDFCAFTDQVEGLGFSHNKL 631

Query: 727 SGNIPSLLGNGFVGLRILSLRSNAFSGEIPS-----KLSNLSSLQVLDLAENNLTGSIPG 781
                         +  +    N    E  +           +   + L+ N +      
Sbjct: 632 KYIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPTE 691

Query: 782 SVGDLKAMAHVQNIVKYLLFGRYRGIYYEENLVINTKGSSKDTPRLFHFIDLSGNNL--- 838
                  +                                         I LS N +   
Sbjct: 692 LFATGSPI---------------------------------------STIILSNNLMTSI 712

Query: 839 ----HGDFPTQLTKLVGLVVLNLSRNHIGGQIPENI--SGLHQLASLDLSSNNLSGGIPS 892
                            L  ++L  N +   + ++   + L  L+++D+S N  S   P+
Sbjct: 713 PENSLKPKDGNYKNTYLLTTIDLRFNKLTS-LSDDFRATTLPYLSNMDVSYNCFS-SFPT 770

Query: 893 SLSSLSFLGYINLSR------NQLSGKIP 915
              + S L    +        N++  + P
Sbjct: 771 QPLNSSQLKAFGIRHQRDAEGNRILRQWP 799

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score =  209 bits (533), Expect = 3e-56
 Identities = 93/716 (12%), Positives = 204/716 (28%), Gaps = 144/716 (20%)

Query: 42  DFKNGLEDPESRLASWKGSN-CCQWHGISCD--DDTGAIVAINL-GNPYHVVNSDSSGSL 97
            + +G  +      +W  +     W        D+ G +  ++L G        D+ G L
Sbjct: 287 RYYSGTINNTIHSLNWNFNKELDMWGDQPGVDLDNNGRVTGLSLAGFGAKGRVPDAIGQL 346

Query: 98  --LEYLDLSFNTFNDIPIPEFLGSLENLQYLNLSEAGFTGVVPSSLGNLHRLQYFDVSAE 155
             L+ L    ++            L                    L    RL   D+  +
Sbjct: 347 TELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSDLLQD 406

Query: 156 LFALSADSLDWLTGLVSLKHLAMNRVDLSLVGSEWLGI---LKNLPNLTELHLSVCGLTG 212
                      +  +     +++    +  + +    I   ++ L  L  ++ +    T 
Sbjct: 407 AIN----RNPEMKPIKKDSRISLKDTQIGNLTNRITFISKAIQRLTKLQIIYFANSPFTY 462

Query: 213 SITSITPVNLTSPAVLDLSLNHFNSLFPNWLVNISTLVYVDLSDCDLYGRIPIGFGELPN 272
              ++   +       +               N+  L  V+L +C    ++P    +LP 
Sbjct: 463 DNIAVDWED------ANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPE 516

Query: 273 LQYLSLAGNNNLSGSCSQLFRGSWKKIQILNFASNKLHGKLPSSVANMTSLTNFDLFDKK 332
           LQ L++A N  +S +                        +L         +  F +    
Sbjct: 517 LQSLNIACNRGISAA-----------------QLKADWTRLADDEDTGPKIQIFYMGYNN 559

Query: 333 VEG-GIPSSIARLCYLKEFDLSGNNLTGSLPEILQGTDLCVSSNSPLPSLISMRLGNNHL 391
           +E     +S+ ++  L   D   N +   L                   L  ++L  N +
Sbjct: 560 LEEFPASASLQKMVKLGLLDCVHNKVR-HLEAF-----------GTNVKLTDLKLDYNQI 607

Query: 392 KGKLPEWLSQLENLVELTLSYNLLQG-PIPASLGNLKNLTKLNLPGNQLNGTLPETLGSL 450
           +    ++ +  + +  L  S+N L+  P   +  ++  +  ++   N++         S+
Sbjct: 608 EEIPEDFCAFTDQVEGLGFSHNKLKYIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSM 667

Query: 451 PE-----LSVLDVSSNSLTGIISEIHFSRLSKLKFLGLSSNSFILNVSSSWIPPFQVQSL 505
            +      S + +S N +    +E+ F+  S +  + LS+N        + IP       
Sbjct: 668 DDYKGINASTVTLSYNEIQKFPTEL-FATGSPISTIILSNNLM------TSIPE------ 714

Query: 506 NMRSCQLGPSFPSWLKTQQGVSFLDFSNASISGPIPNWFWDISSKLSLLNVSLNQLQGQL 565
                                        +   P    + +    L+ +++  N+L   L
Sbjct: 715 -----------------------------NSLKPKDGNYKNTYL-LTTIDLRFNKLTS-L 743

Query: 566 PNPLNIAPFADVDFRSNLLEGPIPLPIVEIELLDLSNNHFSGPIPQNISGSMPNLIFLSV 625
            +             + L           +  +D+S N FS   P     +   L    +
Sbjct: 744 SDDFRA---------TTL---------PYLSNMDVSYNCFSS-FPTQP-LNSSQLKAFGI 783

Query: 626 SGNRLTGKIPGSIGEMQLLQVIDLSRNSISGSISSSIGNCTFLKVLDLSYSSLSGVIPAS 685
              R                  D   N I     + I  C  L  L +  + +   +   
Sbjct: 784 RHQR------------------DAEGNRILRQWPTGITTCPSLIQLQIGSNDIRK-VDEK 824

Query: 686 LGQLTRLQSLHLNNNKLTGNLPSSFQNLTSLETLDLGNNRFSGNIPSLLGNGFVGL 741
           L    +L  L + +N       +S           L  ++       + G   +G+
Sbjct: 825 L--TPQLYILDIADNPNISIDVTSVCPYIEAGMYVLLYDK----TQDIRGCDALGI 874

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score =  120 bits (302), Expect = 8e-28
 Identities = 37/282 (13%), Positives = 76/282 (26%), Gaps = 52/282 (18%)

Query: 647 IDLSRNSISGSISSSIGNCTFLKVLDLSYSSLSGVIPASLGQLTRLQSLHLNNNKLTGNL 706
            +   +         + N   +  L L+     G +P ++GQLT L+ L    +  T + 
Sbjct: 304 FNKELDMWGDQPGVDLDNNGRVTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVSG 363

Query: 707 PSSFQNLTSLETLDLGNNRFSGNIPSLLGNGFVGLRILSLRSNAFSGE------IPSKLS 760
                   + +  +   +R   +   +  +    L +  L  +A +              
Sbjct: 364 RLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSDLLQDAINRNPEMKPIKKDSRI 423

Query: 761 NLSSLQVLDLAENNLTGSIPGSVGDLKAMAHVQNIVKYLLFGRYRGIYYEENLVINTKGS 820
           +L   Q+ +L   N    I  ++  L  +                               
Sbjct: 424 SLKDTQIGNL--TNRITFISKAIQRLTKLQI----------------------------- 452

Query: 821 SKDTPRLFHFIDLSGNNLHGDFPTQLTKLVGLVVLNLSRNHIGGQIPENISGLHQLASLD 880
                     I  + +       T     V     N            + S L  L  ++
Sbjct: 453 ----------IYFANSPF-----TYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVE 497

Query: 881 LSSNNLSGGIPSSLSSLSFLGYINLSRNQLSGKIPFEGHMTT 922
           L +      +P  L  L  L  +N++ N+       +   T 
Sbjct: 498 LYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTR 539

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score =  233 bits (596), Expect = 4e-66
 Identities = 107/598 (17%), Positives = 189/598 (31%), Gaps = 78/598 (13%)

Query: 321 TSLTNFDLFDKKVEGGIPSSIARLCYLKEFDLSGNNLTGSLPEILQGTDLCVSSNSPLPS 380
           +S  N DL    ++     S +    L+  DLS   +     +   G          L  
Sbjct: 32  SSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHG----------LHH 81

Query: 381 LISMRLGNNHLKGKLPEWLSQLENLVELTLSYNLLQGPIPASLGNLKNLTKLNLPGNQLN 440
           L ++ L  N ++   P   S L +L  L      L       +G L  L KLN+  N ++
Sbjct: 82  LSNLILTGNPIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIH 141

Query: 441 G-TLPETLGSLPELSVLDVSSNSLTGIISEIHFSRLSKLKFLGLS---SNSFILNVSSSW 496
              LP    +L  L  +D+S N +  I        L +   + LS   S + I  +    
Sbjct: 142 SCKLPAYFSNLTNLVHVDLSYNYIQTITVN-DLQFLRENPQVNLSLDMSLNPIDFIQDQA 200

Query: 497 IPPFQVQSLNMRSCQLGPS-FPSWLKTQQGVSFLDFSNASISGPIPNWFWDISSKLSLLN 555
               ++  L +R      +   + L+   G+                  ++ S    L +
Sbjct: 201 FQGIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCD 260

Query: 556 VSLNQLQGQLPNPLNIAPFADVDFRSNLLEGPIPLPIVEIELLDLSNNHFSGPIPQNISG 615
           V++++ +    N  +          +             +  + L+              
Sbjct: 261 VTIDEFRLTYTNDFSDDIVKFHCLAN-------------VSAMSLAGVSIKYLED---VP 304

Query: 616 SMPNLIFLSVSGNRLTGKIPGSIGEMQLLQVIDLSRNSISGSISSSIGNCTFLKVLDLSY 675
                  LS+   +L          +  L+ + L+ N  S  IS        L  LDLS 
Sbjct: 305 KHFKWQSLSIIRCQLKQFPTLD---LPFLKSLTLTMNKGS--ISFKKVALPSLSYLDLSR 359

Query: 676 SSLSGVIPASLGQL--TRLQSLHLNNNKLTGNLPSSFQNLTSLETLDLGNNRFSGNIPSL 733
           ++LS     S   L    L+ L L+ N     + ++F  L  L+ LD  ++         
Sbjct: 360 NALSFSGCCSYSDLGTNSLRHLDLSFNGAII-MSANFMGLEELQHLDFQHSTLKRVTEFS 418

Query: 734 LGNGFVGLRILSLRSNAFSGEIPSKLSNLSSLQVLDLAENNLTGSIPGSVGDLKAMAHVQ 793
                  L  L +       +       L+SL  L +A N+   +               
Sbjct: 419 AFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLS------------ 466

Query: 794 NIVKYLLFGRYRGIYYEENLVINTKGSSKDTPRLFHFIDLSGNNLHGDFPTQLTKLVGLV 853
                                        +T  L  F+DLS   L          L  L 
Sbjct: 467 -------------------------NVFANTTNL-TFLDLSKCQLEQISWGVFDTLHRLQ 500

Query: 854 VLNLSRNHIGGQIPENISGLHQLASLDLSSNNLSGGIPSSLSSLSFLGYINLSRNQLS 911
           +LN+S N++      + + L+ L++LD S N +             L + NL+ N ++
Sbjct: 501 LLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIETSKGILQHFPKSLAFFNLTNNSVA 558

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score =  225 bits (576), Expect = 2e-63
 Identities = 110/623 (17%), Positives = 207/623 (33%), Gaps = 85/623 (13%)

Query: 248 TLVYVDLSDCDLYGRIPIGFGELPNLQYLSLAGNNNLSGSCSQLFRGSWKKIQILNFASN 307
             +     D  L  ++P       + + + L+  N L    S  F   + ++Q L+ +  
Sbjct: 12  PNITYQCMDQKLS-KVPDDIP--SSTKNIDLS-FNPLKILKSYSFSN-FSELQWLDLSRC 66

Query: 308 KLHGKLPSSVANMTSLTNFDLFDKKVEGGIPSSIARLCYLKEFDLSGNNLTGSLPEILQG 367
           ++      +   +  L+N  L    ++   P S + L  L+        L       +  
Sbjct: 67  EIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQ 126

Query: 368 TDLCVSSNSPLPSLISMRLGNNHLKG-KLPEWLSQLENLVELTLSYNLLQGPIPASLGNL 426
                     L +L  + + +N +   KLP + S L NLV + LSYN +Q      L  L
Sbjct: 127 ----------LITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFL 176

Query: 427 KNLT----KLNLPGNQLNGTLPETLGSLPELSVLDVSSNSLTGIISEIHFSRLSKLKFLG 482
           +        L++  N ++  + +      +L  L +  N  +  I +     L+ L    
Sbjct: 177 RENPQVNLSLDMSLNPID-FIQDQAFQGIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHR 235

Query: 483 LSSNSFILNVSSSWIPPFQVQSLNMRSCQLGPSFPSWLKTQQGVSFLDFSNASISGPIPN 542
           L    F    +     P  ++ L                    +     +  +       
Sbjct: 236 LILGEFKDERNLEIFEPSIMEGL----------------CDVTIDEFRLTYTNDFSDDIV 279

Query: 543 WFWDISSKLSLLNVSLNQLQGQLPNPLNIAPFADVDFRSNLLEGPIPLPIVEIELLDLSN 602
            F  +++ +S ++++   ++  L +      +  +      L+    L +  ++ L L+ 
Sbjct: 280 KFHCLAN-VSAMSLAGVSIK-YLEDVPKHFKWQSLSIIRCQLKQFPTLDLPFLKSLTLTM 337

Query: 603 NHFSGPIPQNISGSMPNLIFLSVSGNRLTGKIPGSIGEMQL--LQVIDLSRNSISGSISS 660
           N  S         ++P+L +L +S N L+     S  ++    L+ +DLS N     +S+
Sbjct: 338 NKGSISFK---KVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAI-IMSA 393

Query: 661 SIGNCTFLKVLDLSYSSLSGVIPAS-LGQLTRLQSLHLNNNKLTGNLPSSFQNLTSLETL 719
           +      L+ LD  +S+L  V   S    L +L  L ++      +    F  LTSL TL
Sbjct: 394 NFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTL 453

Query: 720 DLGNNRFSGNIPSLLGNGFVGLRILSLRSNAFSGEIPSKLSNLSSLQVLDLAENNLTGSI 779
            +  N F  N  S +      L  L L               L  LQ+L+++ NNL    
Sbjct: 454 KMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLD 513

Query: 780 PGSVGDLKAMAHVQNIVKYLLFGRYRGIYYEENLVINTKGSSKDTPRLFHFIDLSGNNLH 839
                 L +       +  L                                D S N + 
Sbjct: 514 SSHYNQLYS-------LSTL--------------------------------DCSFNRIE 534

Query: 840 GDFPTQLTKLVGLVVLNLSRNHI 862
                       L   NL+ N +
Sbjct: 535 TSKGILQHFPKSLAFFNLTNNSV 557

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score =  218 bits (557), Expect = 6e-61
 Identities = 116/572 (20%), Positives = 198/572 (34%), Gaps = 38/572 (6%)

Query: 196 NLPNLTELHLSVCGLTGSITSITPVNLTSPAVLDLSLNHFNSLFPNWLVNISTLVYVDLS 255
            +PN+T        L+  +    P +      +DLS N    L      N S L ++DLS
Sbjct: 10  VVPNIT-YQCMDQKLS-KVPDDIPSSTK---NIDLSFNPLKILKSYSFSNFSELQWLDLS 64

Query: 256 DCDLYGRIPIGFGELPNLQYLSLAGNNNLSGSCSQLFRGSWKKIQILNFASNKLHGKLPS 315
            C++       +  L +L  L L   N +       F G    ++ L     KL      
Sbjct: 65  RCEIETIEDKAWHGLHHLSNLILT-GNPIQSFSPGSFSGL-TSLENLVAVETKLASLESF 122

Query: 316 SVANMTSLTNFDLFDKKVEG-GIPSSIARLCYLKEFDLSGNNLTGSLPEILQGTDLCVSS 374
            +  + +L   ++    +    +P+  + L  L   DLS N +       LQ        
Sbjct: 123 PIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQF------L 176

Query: 375 NSPLPSLISMRLGNNHLKGKLPEWLSQLENLVELTLSYNLLQGPIPA-SLGNLKNLTKLN 433
                  +S+ +  N +   + +   Q   L ELTL  N     I    L NL  L    
Sbjct: 177 RENPQVNLSLDMSLNPID-FIQDQAFQGIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHR 235

Query: 434 LPGNQLNGTL------PETLGSLPELSVLDVSSNSLTGI-ISEIHFSRLSKLKFLGLSSN 486
           L   +           P  +  L ++++ +             + F  L+ +  + L+  
Sbjct: 236 LILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVKFHCLANVSAMSLAGV 295

Query: 487 SFILNVSSSWIPPFQVQSLNMRSCQLGPSFPSWLKTQQGVSFLDFSNASISGPIPNWFWD 546
           S  +         F+ QSL++  CQL       L     +  L  +    S         
Sbjct: 296 S--IKYLEDVPKHFKWQSLSIIRCQLKQFPTLDLPF---LKSLTLTMNKGSISFKKVAL- 349

Query: 547 ISSKLSLLNVSLNQLQGQLPNPLNIAPFA---DVDFRSNLLEGPIP--LPIVEIELLDLS 601
               LS L++S N L        +         +D   N         + + E++ LD  
Sbjct: 350 --PSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAIIMSANFMGLEELQHLDFQ 407

Query: 602 NNHFSGPIPQNISGSMPNLIFLSVSGNRLTGKIPGSIGEMQLLQVIDLSRNSISGSISSS 661
           ++        +   S+  L++L +S         G    +  L  + ++ NS   +  S+
Sbjct: 408 HSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSN 467

Query: 662 I-GNCTFLKVLDLSYSSLSGVIPASLGQLTRLQSLHLNNNKLTGNLPSSFQNLTSLETLD 720
           +  N T L  LDLS   L  +       L RLQ L++++N L     S +  L SL TLD
Sbjct: 468 VFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLD 527

Query: 721 LGNNRFSGNIPSLLGNGFVGLRILSLRSNAFS 752
              NR   +   L       L   +L +N+ +
Sbjct: 528 CSFNRIETSKGILQHF-PKSLAFFNLTNNSVA 558

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score =  217 bits (556), Expect = 7e-61
 Identities = 110/587 (18%), Positives = 188/587 (32%), Gaps = 82/587 (13%)

Query: 337 IPSSIARLCYLKEFDLSGNNLTGSLPEILQGTDLCVSSNSPLPSLISMRLGNNHLKGKLP 396
           +P  I      K  DLS N L                       L  + L    ++    
Sbjct: 26  VPDDIPS--STKNIDLSFNPLKILKSYSFSN----------FSELQWLDLSRCEIETIED 73

Query: 397 EWLSQLENLVELTLSYNLLQGPIPASLGNLKNLTKLNLPGNQLNGTLPETLGSLPELSVL 456
           +    L +L  L L+ N +Q   P S   L +L  L     +L       +G L  L  L
Sbjct: 74  KAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKL 133

Query: 457 DVSSNSLTGIISEIHFSRLSKLKFLGLSSNSF----ILNVSSSWIPPFQVQSLNMRSCQL 512
           +V+ N +       +FS L+ L  + LS N      + ++      P    SL+M    +
Sbjct: 134 NVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSLNPI 193

Query: 513 GPSFPSWLKTQQGVSFLDFSNASISGPIPNWFWDISSKLSLLNVSLNQLQGQLPNPLNIA 572
                        +  L       S  I        + L +  + L + + +        
Sbjct: 194 D-FIQDQAFQGIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLE---- 248

Query: 573 PFADVDFRSNLLEGPIPLPIVEIELLDLSNNHFSGPIPQNISGSMPNLIFLSVSGNRLTG 632
                 F  +++EG   L  V I+   L+  +            + N+  +S++G  +  
Sbjct: 249 -----IFEPSIMEG---LCDVTIDEFRLTYTNDFSDDIVKFHC-LANVSAMSLAGVSIKY 299

Query: 633 KIPGSIGEMQLLQVIDLSRNSISGSISSSIGNCTFLKVLDLSYSSLSGVIPASLGQLTRL 692
                + +    Q + + R  +         +  FLK L L+ +  S  I      L  L
Sbjct: 300 --LEDVPKHFKWQSLSIIRCQLK---QFPTLDLPFLKSLTLTMNKGS--ISFKKVALPSL 352

Query: 693 QSLHLNNNKLTGNLPSSFQNL--TSLETLDLGNNRFSGNIPSLLGNGFVGLRILSLRSNA 750
             L L+ N L+ +   S+ +L   SL  LDL  N     I S    G   L+ L  + + 
Sbjct: 353 SYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAI--IMSANFMGLEELQHLDFQHST 410

Query: 751 FSGEIP-SKLSNLSSLQVLDLAENNLTGSIPGSVGDLKAMAHVQNIVKYLLFGRYRGIYY 809
                  S   +L  L  LD++  N      G    L                       
Sbjct: 411 LKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLT---------------------- 448

Query: 810 EENLVINTKGSSKDTPRLFHFIDLSGNNLHGDFPTQ-LTKLVGLVVLNLSRNHIGGQIPE 868
             +L                 + ++GN+   +  +        L  L+LS+  +      
Sbjct: 449 --SLNT---------------LKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWG 491

Query: 869 NISGLHQLASLDLSSNNLSGGIPSSLSSLSFLGYINLSRNQLSGKIP 915
               LH+L  L++S NNL     S  + L  L  ++ S N++     
Sbjct: 492 VFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIETSKG 538

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score =  208 bits (532), Expect = 1e-57
 Identities = 111/612 (18%), Positives = 207/612 (33%), Gaps = 93/612 (15%)

Query: 98  LEYLDLSFNTFNDIPIPEFLGSLENLQYLNLSEAGFTGVVPSSLGNLHRLQYFDVSA-EL 156
            + +DLSFN    +       +   LQ+L+LS      +   +   LH L    ++   +
Sbjct: 34  TKNIDLSFNPLKILK-SYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPI 92

Query: 157 FALSADSLDWLTGLVSLKHLAMNRVDLSLVGSEWLGILKNLPNLTELHLSVCGLTGSITS 216
            + S       +GL SL++L      L+ + S     +  L  L +L+++   +      
Sbjct: 93  QSFSPG---SFSGLTSLENLVAVETKLASLES---FPIGQLITLKKLNVAHNFIHSCKLP 146

Query: 217 ITPVNLTSPAVLDLSLNHFNSLFPNWLVNIS----TLVYVDLSDCDLYGRIPIGFGELPN 272
               NLT+   +DLS N+  ++  N L  +       + +D+S   +   I     +   
Sbjct: 147 AYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSLNPI-DFIQDQAFQGIK 205

Query: 273 LQYLSLAGNNNLSGSCSQLFRGSWKKIQILNFASNKLHGKLPSSVANMTSLTNFDLFDKK 332
           L  L+L GN N S       +     + +      +                N ++F+  
Sbjct: 206 LHELTLRGNFNSSNIMKTCLQN-LAGLHVHRLILGEF-----------KDERNLEIFEPS 253

Query: 333 VEGGIPSSIARLCYLKEFDLSGNNLTGSLPEILQGTDLCVSSNSPLPSLISMRLGNNHLK 392
           +  G+         + EF L+  N                     L ++ +M L    +K
Sbjct: 254 IMEGLCD-----VTIDEFRLTYTNDFSDDIVKFHC----------LANVSAMSLAGVSIK 298

Query: 393 GKLPEWLSQLENLVELTLSYNLLQGPIPASLGNLKNLTKLNLPGNQLNGTLPETLGSLPE 452
             L + + +      L++    L+   P    +L  L  L L  N+   ++     +LP 
Sbjct: 299 -YLED-VPKHFKWQSLSIIRCQLKQ-FPTL--DLPFLKSLTLTMNKG--SISFKKVALPS 351

Query: 453 LSVLDVSSNSLTGIISEI-HFSRLSKLKFLGLSSNSFILNVSSSWIPPFQVQSLNMRSCQ 511
           LS LD+S N+L+            + L+ L LS N  I                      
Sbjct: 352 LSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAI---------------------- 389

Query: 512 LGPSFPSWLKTQQGVSFLDFSNASISGPIPNWFWDISSKLSLLNVSLNQLQGQLPNPLNI 571
                 +     + +  LDF ++++        +    KL  L++S    +         
Sbjct: 390 ---IMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIF-- 444

Query: 572 APFADVDFRSNLLEGPIPLPIVEIELLDLSNNHFSGPIPQNISGSMPNLIFLSVSGNRLT 631
                      L           +  L ++ N F      N+  +  NL FL +S  +L 
Sbjct: 445 ---------LGL---------TSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLE 486

Query: 632 GKIPGSIGEMQLLQVIDLSRNSISGSISSSIGNCTFLKVLDLSYSSLSGVIPASLGQLTR 691
               G    +  LQ++++S N++    SS       L  LD S++ +             
Sbjct: 487 QISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIETSKGILQHFPKS 546

Query: 692 LQSLHLNNNKLT 703
           L   +L NN + 
Sbjct: 547 LAFFNLTNNSVA 558

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score =  166 bits (423), Expect = 2e-43
 Identities = 107/618 (17%), Positives = 190/618 (30%), Gaps = 84/618 (13%)

Query: 96  SLLEYLDLSFNTFNDIPIPEFLGSLENLQYLNLSEAGFTGVVPSSLGNLHRLQYFDVSA- 154
           S L++LDLS      I   +    L +L  L L+        P S   L  L+       
Sbjct: 56  SELQWLDLSRCEIETIE-DKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVET 114

Query: 155 ELFALSADSLDWLTGLVSLKHLAMNRVDLSLVGSEWLGILKNLPNLTELHLSVCGLTG-- 212
           +L +L +  +  L  L  L ++A N     +   +      NL NL  + LS   +    
Sbjct: 115 KLASLESFPIGQLITLKKL-NVAHNF----IHSCKLPAYFSNLTNLVHVDLSYNYIQTIT 169

Query: 213 -SITSITPVNLTSPAVLDLSLNHFNSLFPNWLVNISTLVYVDLSDCDLYGRIP-IGFGEL 270
            +       N      LD+SLN  + +       I  L  + L        I       L
Sbjct: 170 VNDLQFLRENPQVNLSLDMSLNPIDFIQDQAFQGIK-LHELTLRGNFNSSNIMKTCLQNL 228

Query: 271 PNLQYLSLAGN-----NNLSGSCSQLFRG-SWKKIQILNFASNKLHGKLPSSVANMTSLT 324
             L    L         NL      +  G     I                    + +++
Sbjct: 229 AGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVKFHCLANVS 288

Query: 325 NFDLFDKKVEGGIPSSIARLCYLKEFDLSGNNLTGSLPEILQGTDLCVSSNSPLPSLISM 384
              L    ++      + +    +   +    L                    LP L S+
Sbjct: 289 AMSLAGVSIKY--LEDVPKHFKWQSLSIIRCQLKQ-------------FPTLDLPFLKSL 333

Query: 385 RLGNNHLKGKLPEWLSQLENLVELTLSYNLLQGPIPASLGNLK--NLTKLNLPGNQLNGT 442
            L  N     +      L +L  L LS N L      S  +L   +L  L+L  N     
Sbjct: 334 TLTMNKG--SISFKKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAI-I 390

Query: 443 LPETLGSLPELSVLDVSSNSLTGIISEIHFSRLSKLKFLGLSSNSFILNVSSSWIPPFQV 502
           +      L EL  LD   ++L  +     F  L KL +L +S  +  +            
Sbjct: 391 MSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKI------DFDGIF 444

Query: 503 QSLNMRSCQLGPSFPSWLKTQQGVSFLDFSNASISGPIPNWFWDISSKLSLLNVSLNQLQ 562
             L            + L T      L  +  S      +  +  ++ L+ L++S  QL+
Sbjct: 445 LGL------------TSLNT------LKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLE 486

Query: 563 GQLPNPLNIAPFADVDFRSNLLEGPIPLPIVEIELLDLSNNHFSGPIPQNISGSMPNLIF 622
                  +                     +  ++LL++S+N+    +  +    + +L  
Sbjct: 487 QISWGVFD--------------------TLHRLQLLNMSHNNLLF-LDSSHYNQLYSLST 525

Query: 623 LSVSGNRLTGKIPGSIGEMQLLQVIDLSRNSISGSISSSIGNCTFLKVLDLSYSSLSGVI 682
           L  S NR+           + L   +L+ NS++  I        ++K       ++  + 
Sbjct: 526 LDCSFNRIETSKGILQHFPKSLAFFNLTNNSVA-CICEHQKFLQWVKEQKQFLVNVEQMT 584

Query: 683 PASLGQLTRLQSLHLNNN 700
            A+  ++     L  NN+
Sbjct: 585 CATPVEMNTSLVLDFNNS 602

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score =  155 bits (395), Expect = 9e-40
 Identities = 77/404 (19%), Positives = 126/404 (31%), Gaps = 32/404 (7%)

Query: 93  SSGSLLEYLDLSFNTFNDIPIPEFLGSLENLQYLNLSEAGFTG-VVPSSLGNLHRLQYFD 151
            +  +   LD+S N  + I    F G    L  L L     +  ++ + L NL  L    
Sbjct: 178 ENPQVNLSLDMSLNPIDFIQDQAFQGI--KLHELTLRGNFNSSNIMKTCLQNLAGLHVHR 235

Query: 152 VSAELFA----LSADSLDWLTGLVSLKHLAMNRVDLSLVGSEWLGILKNLPNLTELHLSV 207
           +    F     L       + GL  +          +    + +     L N++ + L+ 
Sbjct: 236 LILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDD-IVKFHCLANVSAMSLAG 294

Query: 208 CGLTGSITSITP-VNLTSPAVLDLSLNHFNSLFPNWLVNISTLVYVDLSDCDLYGRIPIG 266
                SI  +           L +            L  + +L    L+       I   
Sbjct: 295 V----SIKYLEDVPKHFKWQSLSIIRCQLKQFPTLDLPFLKSL---TLTMNKG--SISFK 345

Query: 267 FGELPNLQYLSLAGNNNLSGSCSQLFRGSWKKIQILNFASNKLHGKLPSSVANMTSLTNF 326
              LP+L YL L+ N      C          ++ L+ + N     + ++   +  L + 
Sbjct: 346 KVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAII-MSANFMGLEELQHL 404

Query: 327 DLFDKKVEGGIP-SSIARLCYLKEFDLSGNNLTGSLPEILQGTDLCVSSNSPLPSLISMR 385
           D     ++     S+   L  L   D+S  N       I  G          L SL +++
Sbjct: 405 DFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLG----------LTSLNTLK 454

Query: 386 LGNNHLKGKLP-EWLSQLENLVELTLSYNLLQGPIPASLGNLKNLTKLNLPGNQLNGTLP 444
           +  N  K        +   NL  L LS   L+         L  L  LN+  N L     
Sbjct: 455 MAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDS 514

Query: 445 ETLGSLPELSVLDVSSNSLTGIISEIHFSRLSKLKFLGLSSNSF 488
                L  LS LD S N +      +       L F  L++NS 
Sbjct: 515 SHYNQLYSLSTLDCSFNRIETSKGIL-QHFPKSLAFFNLTNNSV 557

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score =  152 bits (385), Expect = 1e-38
 Identities = 62/348 (17%), Positives = 103/348 (29%), Gaps = 42/348 (12%)

Query: 598 LDLSNNHFSGPIPQNISGSMPNLIFLSVSGNRLTGKIPGSIGEMQLLQVIDLSRNSISGS 657
               +   S  +P +I     +   + +S N L      S      LQ +DLSR  I   
Sbjct: 16  YQCMDQKLSK-VPDDIP---SSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETI 71

Query: 658 ISSSIGNCTFLKVLDLSYSSLSGVIPASLGQLTRLQSLHLNNNKLTGNLPSSFQNLTSLE 717
              +      L  L L+ + +    P S   LT L++L     KL          L +L+
Sbjct: 72  EDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLK 131

Query: 718 TLDLGNNRFSGNIPSLLGNGFVGLRILSLRSNAFSGEIPSKLSNLS-------------- 763
            L++ +N           +    L  + L  N       + L  L               
Sbjct: 132 KLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSLN 191

Query: 764 -------------SLQVLDLAENNLTGSIPGSVGDLKAMAHVQNIVKYLLFGRYRGIYYE 810
                         L  L L  N  + +I  +     A  HV      L+ G ++     
Sbjct: 192 PIDFIQDQAFQGIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHR----LILGEFKDERNL 247

Query: 811 ENLVINTKGSSKDTPRLFHFIDLSGNNLHGDFPTQLTKLVGLVVLNLSRNHIGGQIPENI 870
           E    +      D         L+  N   D   +   L  +  ++L+   I  +  E++
Sbjct: 248 EIFEPSIMEGLCDVTID--EFRLTYTNDFSDDIVKFHCLANVSAMSLAGVSI--KYLEDV 303

Query: 871 SGLHQLASLDLSSNNLSGGIPSSLSSLSFLGYINLSRNQLSGKIPFEG 918
               +  SL +    L       L  L  L    L+ N+ S       
Sbjct: 304 PKHFKWQSLSIIRCQLKQFPTLDLPFLKSL---TLTMNKGSISFKKVA 348

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score =  102 bits (256), Expect = 2e-22
 Identities = 52/278 (18%), Positives = 90/278 (32%), Gaps = 15/278 (5%)

Query: 83  GNPYHVVNSDSSGSLLEYLDLSFNTFNDIPIPEFLGSLENLQYLNLSEAGFTGVVPSSLG 142
           G     +         + L +        P       L  L+ L L+     G +     
Sbjct: 294 GVSIKYLEDVPKHFKWQSLSIIRCQLKQFPT----LDLPFLKSLTLT--MNKGSISFKKV 347

Query: 143 NLHRLQYFDVSA-ELFALSADSLDWLTGLVSLKHLAMNRVDLSLVGSEWLGILKNLPNLT 201
            L  L Y D+S   L      S   L G  SL+HL ++     ++ +        L  L 
Sbjct: 348 ALPSLSYLDLSRNALSFSGCCSYSDL-GTNSLRHLDLSFNGAIIMSAN----FMGLEELQ 402

Query: 202 ELHLSVCGLTGSITSITPVNLTSPAVLDLSLNHFNSLFPNWLVNISTLVYVDLSDCDLYG 261
            L      L         ++L     LD+S  +    F    + +++L  + ++      
Sbjct: 403 HLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKD 462

Query: 262 RIPIG-FGELPNLQYLSLAGNNNLSGSCSQLFRGSWKKIQILNFASNKLHGKLPSSVANM 320
                 F    NL +L L     L      +F     ++Q+LN + N L     S    +
Sbjct: 463 NTLSNVFANTTNLTFLDL-SKCQLEQISWGVFDTL-HRLQLLNMSHNNLLFLDSSHYNQL 520

Query: 321 TSLTNFDLFDKKVEGGIPSSIARLCYLKEFDLSGNNLT 358
            SL+  D    ++E            L  F+L+ N++ 
Sbjct: 521 YSLSTLDCSFNRIETSKGILQHFPKSLAFFNLTNNSVA 558

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score =  196 bits (499), Expect = 5e-52
 Identities = 114/621 (18%), Positives = 205/621 (33%), Gaps = 117/621 (18%)

Query: 347 LKEFDLSGNNLTGSLPEILQGTDLCVSSNSPLPSLISMRLGNNHLKGKL-PEWLSQLENL 405
            +   LS N +                    L  L  + LG+ +    +  E    L NL
Sbjct: 26  TERLLLSFNYIRTVTASSFPF----------LEQLQLLELGSQYTPLTIDKEAFRNLPNL 75

Query: 406 VELTLSYNLLQGPIPASLGNLKNLTKLNLPGNQLNGTL--PETLGSLPELSVLDVSSNSL 463
             L L  + +    P +   L +L +L L    L+  +       +L  L+ LD+S N +
Sbjct: 76  RILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQI 135

Query: 464 TGIISEIHFSRLSKLKFLGLSSNSF--ILNVSSSWIPPFQVQSLNMRSCQL----GPSFP 517
             +     F +L+ LK +  SSN    +       +    +   ++ +  L       + 
Sbjct: 136 RSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWG 195

Query: 518 SWLKTQQGVSF--LDFSNASISGPIPNWFWDISSKLSLLNVSLNQLQGQLPNPLNIAPFA 575
             +   + +    LD S    +  I   F +  SK    ++ L                 
Sbjct: 196 KCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAH--------------- 240

Query: 576 DVDFRSNLLEGPIPLPIVEIELLDLSNNHFSGPIPQNISG-SMPNLIFLSVSGNRLTGKI 634
                              I       ++   P     +G +  ++  L +S   +    
Sbjct: 241 ------------------HIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLN 282

Query: 635 PGSIGEMQLLQVIDLSRNSISGSISSSIGNCTFLKVLDLSYSSLSGVIPASLGQLTRLQS 694
                 ++ L+V++L+ N I+     +      L+VL+LSY+ L  +  ++   L ++  
Sbjct: 283 SRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAY 342

Query: 695 LHLNNNKLTGNLPSSFQNLTSLETLDLGNNRF--------------SGNIPSLLGNGFVG 740
           + L  N +      +F+ L  L+TLDL +N                SGN    L    + 
Sbjct: 343 IDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALTTIHFIPSIPDIFLSGNKLVTLPKINLT 402

Query: 741 LRILSLRSNAFSG-EIPSKLSNLSSLQVLDLAENNLTGSIPGSVGDLKAMAHVQNIVKYL 799
             ++ L  N     +I   L  +  LQ+L L +N  +                       
Sbjct: 403 ANLIHLSENRLENLDILYFLLRVPHLQILILNQNRFSS---------------------- 440

Query: 800 LFGRYRGIYYEENLVINTKGSSKDTPRLFHFIDLSGNNLHGDFPTQLTK-----LVGLVV 854
                           +   +  + P L   + L  N L   + T+L       L  L V
Sbjct: 441 ---------------CSGDQTPSENPSLEQ-LFLGENMLQLAWETELCWDVFEGLSHLQV 484

Query: 855 LNLSRNHIGGQIPENISGLHQLASLDLSSNNLSGGIPSSLSSLSFLGYINLSRNQLSGKI 914
           L L+ N++    P   S L  L  L L+SN L+    + L +   L  +++SRNQL    
Sbjct: 485 LYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLTVLSHNDLPAN--LEILDISRNQLL--A 540

Query: 915 PFEGHMTTFDASSFAGNPGLC 935
           P      +        N  +C
Sbjct: 541 PNPDVFVSLSVLDITHNKFIC 561

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score =  186 bits (475), Expect = 5e-49
 Identities = 126/645 (19%), Positives = 229/645 (35%), Gaps = 99/645 (15%)

Query: 99  EYLDLSFNTFNDIPIPEFLGSLENLQYLNLSEAGFTGVVPSSLGNLHRLQYFDVSAELFA 158
                 F     +P       L   + L LS      V  SS   L +LQ  ++ ++   
Sbjct: 7   RIAFYRFCNLTQVP-----QVLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTP 61

Query: 159 LSADSLDWLTGLVSLKHLAMNRVDLSLVGSEWLGILKNLPNLTELHLSVCGLT-GSITSI 217
           L+ D  +    L +L+ L +    +  +  +     + L +L EL L  CGL+   +   
Sbjct: 62  LTIDK-EAFRNLPNLRILDLGSSKIYFLHPDA---FQGLFHLFELRLYFCGLSDAVLKDG 117

Query: 218 TPVNLTSPAVLDLSLNHFNSLFPNWLVNISTLVYVDLSDCDLYGRIPIGFGELPNLQYLS 277
              NL +   LDLS N   SL+ +                         FG+L +L+ + 
Sbjct: 118 YFRNLKALTRLDLSKNQIRSLYLHPS-----------------------FGKLNSLKSID 154

Query: 278 LAGNNNLSGSCSQLFRG-SWKKIQILNFASNKLHGKLPSSVANMTSLTNFDLFDKKVEGG 336
              +N +   C         K +   + A+N L+ ++        +              
Sbjct: 155 F-SSNQIFLVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPF------------ 201

Query: 337 IPSSIARLCYLKEFDLSGNNLTGSLPEILQG--TDLCVSSNSPLPSLISMRLGNNHLKGK 394
                 R   L+  D+SGN  T  +        +     S      ++    G +++K  
Sbjct: 202 ------RNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDP 255

Query: 395 LPEWLSQLE--NLVELTLSYNLLQGPIPASLGNLKNLTKLNLPGNQLNGTLPETLGSLPE 452
                + L   ++  L LS+  +          LK+L  LNL  N++N    E    L  
Sbjct: 256 DQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDN 315

Query: 453 LSVLDVSSNSLTGIISEIHFSRLSKLKFLGLSSNSFILNVSSSWIPPFQVQSLNMRSCQL 512
           L VL++S N L  + S   F  L K+ ++ L  N   +    ++    ++Q+L++R   L
Sbjct: 316 LQVLNLSYNLLGELYSSN-FYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNAL 374

Query: 513 G-PSFPSWLKTQQGVSFLDFSNASISGPIPNWFWDISSKLSLLNVSLNQLQGQLPNPLNI 571
               F   +        +  S   +          I+   +L+++S N+L          
Sbjct: 375 TTIHFIPSIPD------IFLSGNKLVT-----LPKINLTANLIHLSENRL---------- 413

Query: 572 APFADVDFRSNLLEGPIPLPIVEIELLDLSNNHFSGPIPQNISGSMPNLIFLSVSGNRLT 631
                     NL      L +  +++L L+ N FS           P+L  L +  N L 
Sbjct: 414 ---------ENLDILYFLLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQ 464

Query: 632 GKIPGSIGE-----MQLLQVIDLSRNSISGSISSSIGNCTFLKVLDLSYSSLSGVIPASL 686
                 +       +  LQV+ L+ N ++        + T L+ L L+ + L+ +    L
Sbjct: 465 LAWETELCWDVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLTVLSHNDL 524

Query: 687 GQLTRLQSLHLNNNKLTGNLPSSFQNLTSLETLDLGNNRFSGNIP 731
                L+ L ++ N+L    P  F +L+    LD+ +N+F     
Sbjct: 525 --PANLEILDISRNQLLAPNPDVFVSLS---VLDITHNKFICECE 564

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score =  176 bits (447), Expect = 2e-45
 Identities = 123/576 (21%), Positives = 210/576 (36%), Gaps = 54/576 (9%)

Query: 213 SITSITPVNLTSPAVLDLSLNHFNSLFPNWLVNISTLVYVDLSDCDLYGRIPIG-FGELP 271
           ++T + P  L +   L LS N+  ++  +    +  L  ++L        I    F  LP
Sbjct: 15  NLTQV-PQVLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLP 73

Query: 272 NLQYLSLAGNNNLSGSCSQLFRGSWKKIQILNFASNKLHGKL--PSSVANMTSLTNFDLF 329
           NL+ L L G++ +       F+G    +  L      L   +       N+ +LT  DL 
Sbjct: 74  NLRILDL-GSSKIYFLHPDAFQGL-FHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLS 131

Query: 330 DKKVEG-GIPSSIARLCYLKEFDLSGNNLTGSLPEILQGTDLCVSSNSPLPSLISMRLGN 388
             ++    +  S  +L  LK  D S N +       L+             +L    L  
Sbjct: 132 KNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQ--------GKTLSFFSLAA 183

Query: 389 NHLKGKLPEWLSQLEN------LVELTLSYNLLQGPIPA------------SLGNLKNLT 430
           N L  ++     +  N      L  L +S N     I              SL    ++ 
Sbjct: 184 NSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIM 243

Query: 431 KLNLPGNQLNGTLPETLGSLPELSV--LDVSSNSLTGIISEIHFSRLSKLKFLGLSSNSF 488
                 + +      T   L   SV  LD+S   +  + S + F  L  LK L L+ N  
Sbjct: 244 GAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRV-FETLKDLKVLNLAYNKI 302

Query: 489 ILNVSSSWIPPFQVQSLNMRSCQLGPSFPSWLKTQQGVSFLDFSNASISGPIPNWFWDIS 548
                 ++     +Q LN+    LG  + S       V+++D     I+  I +  +   
Sbjct: 303 NKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAI-IQDQTFKFL 361

Query: 549 SKLSLLNVSLNQLQGQLPNPLNIAPFADVDFRSNLLEGPIPLPIVEIELLDLSNNHFSGP 608
            KL  L++  N L         I    D+    N L   +P   +   L+ LS N     
Sbjct: 362 EKLQTLDLRDNALT----TIHFIPSIPDIFLSGNKLVT-LPKINLTANLIHLSENRLENL 416

Query: 609 IPQNISGSMPNLIFLSVSGNRLTG-KIPGSIGEMQLLQVIDLSRNSISGSISSSIGNCTF 667
                   +P+L  L ++ NR +      +  E   L+ + L  N +  +  + +    F
Sbjct: 417 DILYFLLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETELCWDVF 476

Query: 668 -----LKVLDLSYSSLSGVIPASLGQLTRLQSLHLNNNKLTGNLPSSFQNLTSLETLDLG 722
                L+VL L+++ L+ + P     LT L+ L LN+N+LT    +      +LE LD+ 
Sbjct: 477 EGLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLTVLSHNDL--PANLEILDIS 534

Query: 723 NNRFSGNIPSLLGNGFVGLRILSLRSNAFSGEIPSK 758
            N+    + +   + FV L +L +  N F  E    
Sbjct: 535 RNQ----LLAPNPDVFVSLSVLDITHNKFICECELS 566

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score =  149 bits (379), Expect = 3e-37
 Identities = 102/481 (21%), Positives = 167/481 (34%), Gaps = 53/481 (11%)

Query: 98  LEYLDLSFNTFNDIPIPEFLGSLENLQYLNLSEAGFTGVVPSSLGNLH--RLQYFDVSAE 155
           L  LDLS N    + +    G L +L+ ++ S      V    L  L    L +F ++A 
Sbjct: 125 LTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAAN 184

Query: 156 LFALSADSLDWLTGLVSLKHLAMNRVDLS--------------LVGSEWLGILKNLPNLT 201
               S  S+DW   +   +++ +  +D+S               +       L    ++ 
Sbjct: 185 SL-YSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIM 243

Query: 202 ELHLSVCGLTGSITSITPVNLTSPAV--LDLSLNHFNSLFPNWLVNISTLVYVDLSDCDL 259
                   +       T   L   +V  LDLS     SL       +  L  ++L+   +
Sbjct: 244 GAGFGFHNIK-DPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKI 302

Query: 260 YGRIPIG-FGELPNLQYLSLAGNNNLSGSCSQLFRGSWKKIQILNFASNKLHGKLPSSVA 318
             +I    F  L NLQ L+L+  N L    S  F G   K+  ++   N +      +  
Sbjct: 303 -NKIADEAFYGLDNLQVLNLS-YNLLGELYSSNFYG-LPKVAYIDLQKNHIAIIQDQTFK 359

Query: 319 NMTSLTNFDLFDKKVEGGIPSSIARLCYLKEFDLSGNNLTGSLPEILQGTDLCVSSNS-- 376
            +  L   DL D  +     ++I  +  + +  LSGN L       L    + +S N   
Sbjct: 360 FLEKLQTLDLRDNAL-----TTIHFIPSIPDIFLSGNKLVTLPKINLTANLIHLSENRLE 414

Query: 377 ---------PLPSLISMRLGNNHLKGKLPEWL-SQLENLVELTLSYNLLQGPIPASL--- 423
                     +P L  + L  N       +   S+  +L +L L  N+LQ      L   
Sbjct: 415 NLDILYFLLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETELCWD 474

Query: 424 --GNLKNLTKLNLPGNQLNGTLPETLGSLPELSVLDVSSNSLTGIISEIHFSRLSKLKFL 481
               L +L  L L  N LN   P     L  L  L ++SN LT +      +    L+ L
Sbjct: 475 VFEGLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLTVLSHNDLPAN---LEIL 531

Query: 482 GLSSNSFILNVSSSWIPPFQVQSL--NMRSCQLGPS-FPSWLKTQQGVSFLDFSNASISG 538
            +S N  +L  +        V  +  N   C+   S F +WL           ++     
Sbjct: 532 DISRNQ-LLAPNPDVFVSLSVLDITHNKFICECELSTFINWLNHTNVTIAGPPADIYCVY 590

Query: 539 P 539
           P
Sbjct: 591 P 591

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score =  117 bits (294), Expect = 7e-27
 Identities = 78/466 (16%), Positives = 135/466 (28%), Gaps = 85/466 (18%)

Query: 89  VNSDSSGSLLEYLDLSFNTFNDIPIPEFLG-SLENLQYLNLSEAGFTGVVPSSLGNLHRL 147
             S      +      F+   D     F G +  ++++L+LS      +       L  L
Sbjct: 233 AFSLILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDL 292

Query: 148 QYFDVSAELFALSADSLDWLTGLVSLKHLAMNRVDLSLVGSEWLGILKNLPNLTELHLSV 207
           +  +++                   +  +                    L NL  L+LS 
Sbjct: 293 KVLNLAY----------------NKINKI-------------ADEAFYGLDNLQVLNLSY 323

Query: 208 CGLTGSITSITPVNLTSPAVLDLSLNHFNSLFPNWLVNISTLVYVDLSDCDLYGRIPIGF 267
             L   + S     L   A +DL  NH   +       +  L  +DL D  L        
Sbjct: 324 NLLG-ELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNAL-----TTI 377

Query: 268 GELPNLQYLSLAGNNNLSGSCSQLFRGSWKKIQILNFASNKLHGKLPSSVANMTSLTNFD 327
             +P++  + L   N L                +++ + N+L                  
Sbjct: 378 HFIPSIPDIFL-SGNKLVTLPKINLTA-----NLIHLSENRLENLDIL------------ 419

Query: 328 LFDKKVEGGIPSSIARLCYLKEFDLSGNNLTGSLPEILQGTDLCVSSNSPLPSLISMRLG 387
                        + R+ +L+   L+ N  +        G        S  PSL  + LG
Sbjct: 420 -----------YFLLRVPHLQILILNQNRFS-----SCSGDQTP----SENPSLEQLFLG 459

Query: 388 NNHLKGK-----LPEWLSQLENLVELTLSYNLLQGPIPASLGNLKNLTKLNLPGNQLNGT 442
            N L+         +    L +L  L L++N L    P    +L  L  L+L  N+L   
Sbjct: 460 ENMLQLAWETELCWDVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLTVL 519

Query: 443 LPETLGSLPELSVLDVSSNSLTGIISEIHFSRLSKLKFLGLSSNSFILNVSSSWIPPFQV 502
               L     L +LD+S N     +   +      L  L ++ N FI     S    +  
Sbjct: 520 SHNDL--PANLEILDISRNQ----LLAPNPDVFVSLSVLDITHNKFICECELSTFINWLN 573

Query: 503 QSLNMRSCQLGPSFPSWLKTQQGVSFLDFSNASISGPIPNWFWDIS 548
            +    +      +  +  +  GVS    S               S
Sbjct: 574 HTNVTIAGPPADIYCVYPDSFSGVSLFSLSTEGCDEEEVLKSLKFS 619

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 77.5 bits (191), Expect = 1e-14
 Identities = 43/217 (19%), Positives = 69/217 (31%), Gaps = 46/217 (21%)

Query: 705 NLPSSFQNLTSLETLDLGNNRFSGNIPSLLGNGFVGLRILSLRSNAFSGEIPSK-LSNLS 763
           NL    Q L + E L L  N     + +        L++L L S      I  +   NL 
Sbjct: 15  NLTQVPQVLNTTERLLLSFNYIR-TVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLP 73

Query: 764 SLQVLDLAENNLTGSIPGSVGDLKAMAHVQNIVKYLLFGRYRGIYYEENLVINTKGSSKD 823
           +L++LDL  + +    P +   L  +                                  
Sbjct: 74  NLRILDLGSSKIYFLHPDAFQGLFHLFE-------------------------------- 101

Query: 824 TPRLFHFIDLSGNNLHGDF--PTQLTKLVGLVVLNLSRNHIGG-QIPENISGLHQLASLD 880
                  + L    L            L  L  L+LS+N I    +  +   L+ L S+D
Sbjct: 102 -------LRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSID 154

Query: 881 LSSNNLSGGIPSSLSSLSF--LGYINLSRNQLSGKIP 915
            SSN +       L  L    L + +L+ N L  ++ 
Sbjct: 155 FSSNQIFLVCEHELEPLQGKTLSFFSLAANSLYSRVS 191

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score =  187 bits (477), Expect = 1e-50
 Identities = 110/503 (21%), Positives = 194/503 (38%), Gaps = 37/503 (7%)

Query: 299 IQILNFASNKLHGKLPSSVANMTSLTNFDLFDKKVEGGIPSSIARLCYLKEFDLSGNNLT 358
            + L+ + N L      S  +   L   DL   +++     +   L +L    L+GN + 
Sbjct: 30  TKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQ 89

Query: 359 GSLPEILQGTDLCVSSNSPLPSLISMRLGNNHLKGKLPEWLSQLENLVELTLSYNLLQ-G 417
                   G          L SL  +     +L       +  L+ L EL +++NL+Q  
Sbjct: 90  SLALGAFSG----------LSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSF 139

Query: 418 PIPASLGNLKNLTKLNLPGNQLNGTLPETLGSLPELSV----LDVSSNSLTGIISEIHFS 473
            +P    NL NL  L+L  N++       L  L ++ +    LD+S N +  I     F 
Sbjct: 140 KLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGA-FK 198

Query: 474 RLSKLKFLGLSSNSFILNVSSSWIPPFQ-------VQSLNMRSCQLGPSFPSWLKTQQGV 526
            +  L  L L +N   LNV  + I           V         L     S L+    +
Sbjct: 199 EIR-LHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNL 257

Query: 527 SFLDFSNASISG---PIPNWFWDISSKLSLLNVSLNQLQGQLPNPLNIAPFADVDFRSNL 583
           +  +F  A +      I + F  +++ +S  ++    ++ ++ +      +  ++  +  
Sbjct: 258 TIEEFRLAYLDYYLDDIIDLFNCLTN-VSSFSLVSVTIE-RVKDFSYNFGWQHLELVNCK 315

Query: 584 LEGPIPLPIVEIELLDLSNNHFSGPIPQNISGSMPNLIFLSVSGNRLT--GKIPGSIGEM 641
                 L +  ++ L  ++N             +P+L FL +S N L+  G    S    
Sbjct: 316 FGQFPTLKLKSLKRLTFTSNKGGNAFS---EVDLPSLEFLDLSRNGLSFKGCCSQSDFGT 372

Query: 642 QLLQVIDLSRNSISGSISSSIGNCTFLKVLDLSYSSLSGVIPAS-LGQLTRLQSLHLNNN 700
             L+ +DLS N +  ++SS+      L+ LD  +S+L  +   S    L  L  L +++ 
Sbjct: 373 TSLKYLDLSFNGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHT 431

Query: 701 KLTGNLPSSFQNLTSLETLDLGNNRFSGNIPSLLGNGFVGLRILSLRSNAFSGEIPSKLS 760
                    F  L+SLE L +  N F  N    +      L  L L         P+  +
Sbjct: 432 HTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFN 491

Query: 761 NLSSLQVLDLAENNLTGSIPGSV 783
           +LSSLQVL++A N L  S+P  +
Sbjct: 492 SLSSLQVLNMASNQLK-SVPDGI 513

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score =  184 bits (470), Expect = 1e-49
 Identities = 110/585 (18%), Positives = 188/585 (32%), Gaps = 85/585 (14%)

Query: 337 IPSSIARLCYLKEFDLSGNNLTGSLPEILQGTDLCVSSNSPLPSLISMRLGNNHLKGKLP 396
           IP ++      K  DLS N L                     P L  + L    ++    
Sbjct: 22  IPDNLPF--STKNLDLSFNPLRHLGSYSFFS----------FPELQVLDLSRCEIQTIED 69

Query: 397 EWLSQLENLVELTLSYNLLQGPIPASLGNLKNLTKLNLPGNQLNGTLPETLGSLPELSVL 456
                L +L  L L+ N +Q     +   L +L KL      L       +G L  L  L
Sbjct: 70  GAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKEL 129

Query: 457 DVSSNSLTGIISEIHFSRLSKLKFLGLSSNSFILNVSSSWIPPFQ-----VQSLNMRSCQ 511
           +V+ N +       +FS L+ L+ L LSSN  I ++  + +           SL++    
Sbjct: 130 NVAHNLIQSFKLPEYFSNLTNLEHLDLSSNK-IQSIYCTDLRVLHQMPLLNLSLDLSLNP 188

Query: 512 LGPSFPSWLKTQQGVSFLDFSNASISGPIPNWFWDISSKLSLLNVSLNQLQGQLPNPLNI 571
           +          +  +  L   N   S  +        + L +  + L + + +    L  
Sbjct: 189 MN-FIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNE--GNLE- 244

Query: 572 APFADVDFRSNLLEGPIPLPIVEIELLDLSNNHFSGPIPQNISGSMPNLIFLSVSGNRLT 631
                  F  + LEG   L  + IE   L+   +      ++   + N+   S+    + 
Sbjct: 245 ------KFDKSALEG---LCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIE 295

Query: 632 GKIPGSIGEMQLLQVIDLSRNSISGSISSSIGNCTFLKVLDLSYSSLSGVIPASLGQLTR 691
                S       Q ++L         +  + +   LK L  + +        S   L  
Sbjct: 296 RVKDFS--YNFGWQHLELVNCKFGQFPTLKLKS---LKRLTFTSNKGGNAF--SEVDLPS 348

Query: 692 LQSLHLNNNKLT--GNLPSSFQNLTSLETLDLGNNRFSGNIPSLLGNGFVGLRILSLRSN 749
           L+ L L+ N L+  G    S    TSL+ LDL  N     + S        L  L  + +
Sbjct: 349 LEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVI-TMSSNFLG-LEQLEHLDFQHS 406

Query: 750 AFSGEIP-SKLSNLSSLQVLDLAENNLTGSIPGSVGDLKAMAHVQNIVKYLLFGRYRGIY 808
                   S   +L +L  LD++  +   +  G    L                      
Sbjct: 407 NLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGL---------------------- 444

Query: 809 YEENLVINTKGSSKDTPRLFHFIDLSGNNLHGDFPTQ-LTKLVGLVVLNLSRNHIGGQIP 867
                             L   + ++GN+   +F     T+L  L  L+LS+  +  Q+ 
Sbjct: 445 ----------------SSLEV-LKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLE-QLS 486

Query: 868 ENI-SGLHQLASLDLSSNNLSGGIPSSLSSLSFLGYINLSRNQLS 911
               + L  L  L+++SN L          L+ L  I L  N   
Sbjct: 487 PTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTNPWD 531

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score =  169 bits (429), Expect = 2e-44
 Identities = 114/577 (19%), Positives = 201/577 (34%), Gaps = 57/577 (9%)

Query: 194 LKNLPNLTELHLSVCGLTGSITSITPVNLTSPAVLDLSLNHFNSLFPNWLVNISTLVYVD 253
           ++ +PN+T            I    P +      LDLS N    L      +   L  +D
Sbjct: 4   VEVVPNIT-YQCMELNFY-KIPDNLPFSTK---NLDLSFNPLRHLGSYSFFSFPELQVLD 58

Query: 254 LSDCDLYGRIPIGFGELPNLQYLSLAGNNNLSGSCSQLFRGSWKKIQILNFASNKLHGKL 313
           LS C++       +  L +L  L L   N +       F G    +Q L      L    
Sbjct: 59  LSRCEIQTIEDGAYQSLSHLSTLILT-GNPIQSLALGAFSGL-SSLQKLVAVETNLASLE 116

Query: 314 PSSVANMTSLTNFDLFDKK-VEGGIPSSIARLCYLKEFDLSGNNLTGSLPEILQGTDLCV 372
              + ++ +L   ++         +P   + L  L+  DLS N +       +  TDL V
Sbjct: 117 NFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQS-----IYCTDLRV 171

Query: 373 SSNSPLPSLISMRLGNNHLKGKLPEWLSQLENLVELTLSYNLLQGPIPA-SLGNLKNLTK 431
               PL   +S+ L  N +    P    ++  L +LTL  N     +    +  L  L  
Sbjct: 172 LHQMPL-LNLSLDLSLNPMNFIQPGAFKEI-RLHKLTLRNNFDSLNVMKTCIQGLAGLEV 229

Query: 432 LNL------PGNQLNGTLPETLGSLPELSVLDVSSNSLTGIISEIH--FSRLSKLKFLGL 483
             L          L       L  L  L++ +     L   + +I   F+ L+ +    L
Sbjct: 230 HRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSL 289

Query: 484 SSNSF-ILNVSSSWIPPFQVQSLNMRSCQLGPSFPSWLKTQQGVSFLDFSNASISGPIPN 542
            S +   +   S       ++ +N +  Q        LK       L F++         
Sbjct: 290 VSVTIERVKDFSYNFGWQHLELVNCKFGQFPTLKLKSLKR------LTFTSNKGGNAFS- 342

Query: 543 WFWDISSKLSLLNVSLNQLQGQLPNPLNIAPFADVDFRSNLLEGPIPLPIVEIELLDLSN 602
              D+ S L  L++S N L                   S    G   L     + LDLS 
Sbjct: 343 -EVDLPS-LEFLDLSRNGLS-------------FKGCCSQSDFGTTSL-----KYLDLSF 382

Query: 603 NHFSGPIPQNISGSMPNLIFLSVSGNRLTGKIPGSI-GEMQLLQVIDLSRNSISGSISSS 661
           N     +  N  G +  L  L    + L      S+   ++ L  +D+S      + +  
Sbjct: 383 NGVIT-MSSNFLG-LEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGI 440

Query: 662 IGNCTFLKVLDLSYSSLSGVIPA-SLGQLTRLQSLHLNNNKLTGNLPSSFQNLTSLETLD 720
               + L+VL ++ +S           +L  L  L L+  +L    P++F +L+SL+ L+
Sbjct: 441 FNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLN 500

Query: 721 LGNNRFSGNIPSLLGNGFVGLRILSLRSNAFSGEIPS 757
           + +N+   ++P  + +    L+ + L +N +    P 
Sbjct: 501 MASNQLK-SVPDGIFDRLTSLQKIWLHTNPWDCSCPR 536

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score =  156 bits (396), Expect = 3e-40
 Identities = 100/575 (17%), Positives = 185/575 (32%), Gaps = 114/575 (19%)

Query: 192 GILKNLPNLTELHLSVCGLTGSITSITPVNLTSPAVLDLSLNHFNSLFPNWLVNISTLVY 251
               + P L  L LS C +  +I      +L+  + L L+ N   SL       +S+L  
Sbjct: 46  YSFFSFPELQVLDLSRCEIQ-TIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQK 104

Query: 252 VDLSDCDLYGRIPIGFGELPNLQYLSLAGNNNLSGSCSQLFRGSWKKIQILNFASNKLHG 311
           +   + +L        G L  L+ L++A N   S    + F      ++ L+ +SNK+  
Sbjct: 105 LVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNL-TNLEHLDLSSNKIQS 163

Query: 312 KLPSSVANMTSLTNF----DLFDKKVEGGIPSSIARLCYLKEFDLSGNNLTGSLPEIL-- 365
              + +  +  +       DL    +   I     +   L +  L  N  + ++ +    
Sbjct: 164 IYCTDLRVLHQMPLLNLSLDLSLNPMNF-IQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQ 222

Query: 366 -------------------QGTDLCVSSNSPLPSLISMRLGNNHLKG---KLPEWLSQLE 403
                                     S+   L +L        +L      + +  + L 
Sbjct: 223 GLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLT 282

Query: 404 NLVELTLSYNLLQGPIPAS-LGNLKNLTKLNLPGNQLNGTLPETLGSLPELSVLDVSSNS 462
           N+   +L    ++     S     ++L  +N    Q           L  L  L  +SN 
Sbjct: 283 NVSSFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQF------PTLKLKSLKRLTFTSNK 336

Query: 463 LTGIISEIHFSRLSKLKFLGLSSN--SFILNVSSSWIPPFQVQSLNMRSCQLGPSFPSWL 520
                S      L  L+FL LS N  SF    S S      ++ L++    +        
Sbjct: 337 GGNAFS---EVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGV-------- 385

Query: 521 KTQQGVSFLDFSNASISGPIPNWFWDISSKLSLLNVSLNQLQGQLPNPLNIAPFADVDFR 580
                         ++S            +L  L+   + L+        ++ F+     
Sbjct: 386 -------------ITMSSNFLG-----LEQLEHLDFQHSNLK-------QMSEFSVFLSL 420

Query: 581 SNLLEGPIPLPIVEIELLDLSNNHFSGPIPQNISGSMPNLIFLSVSGNRLTGKI-PGSIG 639
            NL+             LD+S+ H        I   + +L  L ++GN       P    
Sbjct: 421 RNLIY------------LDISHTHTRV-AFNGIFNGLSSLEVLKMAGNSFQENFLPDIFT 467

Query: 640 EMQLLQVIDLSRNSISGSISSSIGNCTFLKVLDLSYSSLSGVIPASLGQLTRLQSLHLNN 699
           E++ L  +DLS+  +                          + P +   L+ LQ L++ +
Sbjct: 468 ELRNLTFLDLSQCQL------------------------EQLSPTAFNSLSSLQVLNMAS 503

Query: 700 NKLTGNLPSSFQNLTSLETLDLGNNRFSGNIPSLL 734
           N+L       F  LTSL+ + L  N +  + P + 
Sbjct: 504 NQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRID 538

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score =  150 bits (380), Expect = 3e-38
 Identities = 109/578 (18%), Positives = 192/578 (33%), Gaps = 86/578 (14%)

Query: 98  LEYLDLSFNTFNDIPIPEFLGSLENLQYLNLSEAGFTGVVPSSLGNLHRLQYFDVSA-EL 156
            + LDLSFN    +       S   LQ L+LS      +   +  +L  L    ++   +
Sbjct: 30  TKNLDLSFNPLRHLG-SYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPI 88

Query: 157 FALSADSLDWLTGLVSLKHLAMNRVDLSLVGSEWLGILKNLPNLTELHLSVCGLTGSITS 216
            +L+  +   L+ L  L         L+ + +     + +L  L EL+++   +      
Sbjct: 89  QSLALGAFSGLSSLQKL-VAVETN--LASLEN---FPIGHLKTLKELNVAHNLIQSFKLP 142

Query: 217 ITPVNLTSPAVLDLSLNHFNSLFPNWLVNISTL----VYVDLSDCDLYGRIPIGFGELPN 272
               NLT+   LDLS N   S++   L  +  +    + +DLS   +   I  G  +   
Sbjct: 143 EYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPM-NFIQPGAFKEIR 201

Query: 273 LQYLSLAGNNNLSGSCSQLFRG-SWKKIQILNFASNKLHGKLPSSVAN-MTSLTNFDLFD 330
           L  L+L  N +         +G +  ++  L     +  G L     + +  L N  + +
Sbjct: 202 LHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEE 261

Query: 331 ------KKVEGGIPSSIARLCYLKEFDLSGNNLTGSLPEILQGTDLCVSSNSPLPSLISM 384
                       I      L  +  F L    +              V   S       +
Sbjct: 262 FRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIER------------VKDFSYNFGWQHL 309

Query: 385 RLGNNHLKGKLPEWLSQLENLVELTLSYNLLQGPIPASLGNLKNLTKLNLPGNQLN--GT 442
            L N       P    +L++L  LT + N        S  +L +L  L+L  N L+  G 
Sbjct: 310 ELVNCKFGQ-FPTL--KLKSLKRLTFTSNKGGNAF--SEVDLPSLEFLDLSRNGLSFKGC 364

Query: 443 LPETLGSLPELSVLDVSSNSLTGIISEIHFSRLSKLKFLGLSSNSFILNVSSSWIPPFQV 502
             ++      L  LD+S N +  + S   F  L +L+ L    ++         +  F V
Sbjct: 365 CSQSDFGTTSLKYLDLSFNGVITMSSN--FLGLEQLEHLDFQHSNL------KQMSEFSV 416

Query: 503 QSLNMRSCQLGPSFPSWLKTQQGVSFLDFSNASISGPIPNWFWDISSKLSLLNVSLNQLQ 562
                              + + + +LD S+        N  ++  S L +L ++ N  Q
Sbjct: 417 -----------------FLSLRNLIYLDISHTHTRV-AFNGIFNGLSSLEVLKMAGNSFQ 458

Query: 563 GQLPNPLNIAPFADVDFRSNLLEGPIPLPIVEIELLDLSNNHFSGPIPQNISGSMPNLIF 622
                          D  + L           +  LDLS       +      S+ +L  
Sbjct: 459 ENFLP----------DIFTEL---------RNLTFLDLSQCQLEQ-LSPTAFNSLSSLQV 498

Query: 623 LSVSGNRLTGKIPGSIGEMQLLQVIDLSRNSISGSISS 660
           L+++ N+L     G    +  LQ I L  N    S   
Sbjct: 499 LNMASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPR 536

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score =  125 bits (317), Expect = 3e-30
 Identities = 75/384 (19%), Positives = 131/384 (34%), Gaps = 30/384 (7%)

Query: 97  LLEYLDLSFNTFNDIPIPEFLGSLENLQYLNLSEAGFTGVVPS-SLGNLHRLQYFDVSAE 155
           L   LDLS N  N I    F      L  L L     +  V    +  L  L+   +   
Sbjct: 178 LNLSLDLSLNPMNFIQPGAF--KEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLG 235

Query: 156 LFA----LSADSLDWLTGLVSLKHLAMNRVDLSLVGSEWLGILKNLPNLTELHLSVCGLT 211
            F     L       L GL +L         L     + + +   L N++   L    + 
Sbjct: 236 EFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIE 295

Query: 212 GSITSITPVNLTSPAVLDLSLNHFNSLFPNWLVNISTLVYVDLSDCDLYGRIPIGFGELP 271
                          +++     F +L         +L  +  +             +LP
Sbjct: 296 RVKDFSYNFGWQHLELVNCKFGQFPTLKLK------SLKRLTFTSNKGGNAFS--EVDLP 347

Query: 272 NLQYLSLAGNN-NLSGSCSQLFRGSWKKIQILNFASNKLHGKLPSSVANMTSLTNFDLFD 330
           +L++L L+ N  +  G CSQ   G+   ++ L+ + N +   + S+   +  L + D   
Sbjct: 348 SLEFLDLSRNGLSFKGCCSQSDFGTTS-LKYLDLSFNGVI-TMSSNFLGLEQLEHLDFQH 405

Query: 331 KKVEGGIPSSI-ARLCYLKEFDLSGNNLTGSLPEILQGTDLCVSSNSPLPSLISMRLGNN 389
             ++     S+   L  L   D+S  +   +   I  G          L SL  +++  N
Sbjct: 406 SNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNG----------LSSLEVLKMAGN 455

Query: 390 HLKGKL-PEWLSQLENLVELTLSYNLLQGPIPASLGNLKNLTKLNLPGNQLNGTLPETLG 448
             +    P+  ++L NL  L LS   L+   P +  +L +L  LN+  NQL         
Sbjct: 456 SFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFD 515

Query: 449 SLPELSVLDVSSNSLTGIISEIHF 472
            L  L  + + +N        I +
Sbjct: 516 RLTSLQKIWLHTNPWDCSCPRIDY 539

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score =  115 bits (290), Expect = 7e-27
 Identities = 58/342 (16%), Positives = 107/342 (31%), Gaps = 31/342 (9%)

Query: 599 DLSNNHFSGPIPQNISGSMPNLIFLSVSGNRLTGKIPGSIGEMQLLQVIDLSRNSISGSI 658
                +F   IP N+     +   L +S N L      S      LQV+DLSR  I    
Sbjct: 13  QCMELNFYK-IPDNLP---FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIE 68

Query: 659 SSSIGNCTFLKVLDLSYSSLSGVIPASLGQLTRLQSLHLNNNKLTGNLPSSFQNLTSLET 718
             +  + + L  L L+ + +  +   +   L+ LQ L      L         +L +L+ 
Sbjct: 69  DGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKE 128

Query: 719 LDLGNNRFSGNIPSLLGNGFVGLRILSLRSNAFSGEIPSKLSNLSSLQV----LDLAENN 774
           L++ +N           +    L  L L SN       + L  L  + +    LDL+ N 
Sbjct: 129 LNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNP 188

Query: 775 LTGSIPGSVGDLK-----------AMAHVQNIVKYLLFGRYRGIYYEENLVINT-KGSSK 822
           +    PG+  +++           ++  ++  ++ L       +   E       +   K
Sbjct: 189 MNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDK 248

Query: 823 DTPRLFHFIDLSGNNL------HGDFPTQLTKLVGLVVLNLSRNHIGGQIPENISGLHQL 876
                   + +    L        D       L  +   +L    I  +  ++ S     
Sbjct: 249 SALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTI--ERVKDFSYNFGW 306

Query: 877 ASLDLSSNNLSGGIPSSLSSLSFLGYINLSRNQLSGKIPFEG 918
             L+L +          L SL  L     + N+         
Sbjct: 307 QHLELVNCKFGQFPTLKLKSLKRL---TFTSNKGGNAFSEVD 345

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 83.2 bits (206), Expect = 1e-16
 Identities = 50/213 (23%), Positives = 86/213 (40%), Gaps = 11/213 (5%)

Query: 82  LGNPYHVVNSDSSGSLLEYLDLSFNTFNDIPIPEF-LGSLENLQYLNLSEAGFTGVVPSS 140
             N      S+     LE+LDLS N  +             +L+YL+LS  G    + S+
Sbjct: 333 TSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVI-TMSSN 391

Query: 141 LGNLHRLQYFDVSA-ELFALSADSLDWLTGLVSLKHLAMNRVDLSLVGSEWLGILKNLPN 199
              L +L++ D     L  +S  S+     L +L +L ++     +  +   GI   L +
Sbjct: 392 FLGLEQLEHLDFQHSNLKQMSEFSV--FLSLRNLIYLDISHTHTRVAFN---GIFNGLSS 446

Query: 200 LTELHLSVCGLTGSITSITPVNLTSPAVLDLSLNHFNSLFPNWLVNISTLVYVDLSDCDL 259
           L  L ++      +        L +   LDLS      L P    ++S+L  ++++   L
Sbjct: 447 LEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQL 506

Query: 260 YGRIPIG-FGELPNLQYLSLAGNNNLSGSCSQL 291
              +P G F  L +LQ + L   N    SC ++
Sbjct: 507 K-SVPDGIFDRLTSLQKIWL-HTNPWDCSCPRI 537

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 80.5 bits (199), Expect = 1e-15
 Identities = 57/299 (19%), Positives = 107/299 (35%), Gaps = 28/299 (9%)

Query: 98  LEYLDLSFNTFNDIPIPEFLGSLENLQYLNLSEAGFTGVVPSSLGNLHRLQYFDVSAELF 157
           +    L   T   +    +       Q+L L    F       L +L RL          
Sbjct: 284 VSSFSLVSVTIERVKDFSYN---FGWQHLELVNCKFGQFPTLKLKSLKRL-------TFT 333

Query: 158 ALSADSLDWLTGLVSLKHLAMNRVDLSLVGSEWLGILKNLPNLTELHLSVCGLTGSITSI 217
           +    +      L SL+ L ++R  LS  G           +L  L LS  G+  +++S 
Sbjct: 334 SNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCC-SQSDFGTTSLKYLDLSFNGVI-TMSSN 391

Query: 218 TPVNLTSPAVLDLSLNHFNSLFP-NWLVNISTLVYVDLSDCDLYGRIPIGFGELPNLQYL 276
               L     LD   ++   +   +  +++  L+Y+D+S           F  L +L+ L
Sbjct: 392 FL-GLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVL 450

Query: 277 SLAGNNNLSGSCSQLFRGSWKKIQILNFASNKLHGKLPSSVANMTSLTNFDLFDKKVEGG 336
            +A  N+   +         + +  L+ +  +L    P++  +++SL   ++   +++  
Sbjct: 451 KMA-GNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSV 509

Query: 337 IPSSIARLCYLKEFDLSGNNLTGSLPEIL-------------QGTDLCVSSNSPLPSLI 382
                 RL  L++  L  N    S P I              QG+  C  S  P+ S+I
Sbjct: 510 PDGIFDRLTSLQKIWLHTNPWDCSCPRIDYLSRWLNKNSQKEQGSAKCSGSGKPVRSII 568

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score =  169 bits (429), Expect = 2e-44
 Identities = 100/568 (17%), Positives = 177/568 (31%), Gaps = 101/568 (17%)

Query: 351 DLSGNNLTGSLPEILQGTDLCVSSNSPLPSLISMRLGNNHLKGKLPEWLSQLENLVELTL 410
           D    + T S+P  L              ++ S+ L  N +       L    NL  L L
Sbjct: 11  DGRSRSFT-SIPSGL------------TAAMKSLDLSFNKITYIGHGDLRACANLQVLIL 57

Query: 411 SYNLLQGPIPASLGNLKNLTKLNLPGNQLNGTLPETLGSLPELSVLDVSSNSLTGIISEI 470
             + +      +  +L +L  L+L  N L+       G L  L  L++  N    +    
Sbjct: 58  KSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTS 117

Query: 471 HFSRLSKLKFLGLSSNSFILNVSSSWIPPF-QVQSLNMRSCQLGPSFPSWLKTQQGVSFL 529
            F  L+ L+ L + +      +          +  L +++  L       LK+ + +  L
Sbjct: 118 LFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHL 177

Query: 530 DFSNASISGPIPNWFWDISSKLSLLNVSLNQLQGQLPNPLNIAP--------------FA 575
               +  +  +  +  DI S +  L +    L     +PL +                  
Sbjct: 178 TLHLSESAFLLEIFA-DILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLT 236

Query: 576 DVDFRSNLLEGPIPLPIVEIELLDLSNNHFSGPIPQNISGSMPNLIF--------LSVSG 627
           D  F   L      L + E+E  D + N   G    + S  +  L          L +  
Sbjct: 237 DESFNELLKLLRYILELSEVEFDDCTLNGL-GDFNPSESDVVSELGKVETVTIRRLHIPQ 295

Query: 628 NRLTGKIPGSIGEMQLLQVIDLSRNSISGSISSSIGNCTFLKVLDLSYSSLSGVI---PA 684
             L   +      ++ ++ I +  + +     S   +   L+ LDLS + +        A
Sbjct: 296 FYLFYDLSTVYSLLEKVKRITVENSKVFLVPCSFSQHLKSLEFLDLSENLMVEEYLKNSA 355

Query: 685 SLGQLTRLQSLHLNNNKLT--GNLPSSFQNLTSLETLDLGNNRFSGNIPSLLGNGFVGLR 742
             G    LQ+L L+ N L            L +L +LD+  N F     S        +R
Sbjct: 356 CKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFHPMPDSCQWPE--KMR 413

Query: 743 ILSLRSNAFSGEIPSKLSNLSSLQVLDLAENNLTGSIPGSVGDLKAMAHVQNIVKYLLFG 802
            L+L S      + + +    +L+VLD++ NNL  S    +  L+               
Sbjct: 414 FLNLSSTGIR-VVKTCI--PQTLEVLDVSNNNLD-SFSLFLPRLQ--------------- 454

Query: 803 RYRGIYYEENLVINTKGSSKDTPRLFHFIDLSGNNLH----GDFPTQLTKLVGLVVLNLS 858
                                       + +S N L           L       V+ +S
Sbjct: 455 ---------------------------ELYISRNKLKTLPDASLFPVLL------VMKIS 481

Query: 859 RNHIGGQIPENISGLHQLASLDLSSNNL 886
           RN +          L  L  + L +N  
Sbjct: 482 RNQLKSVPDGIFDRLTSLQKIWLHTNPW 509

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score =  164 bits (418), Expect = 4e-43
 Identities = 80/481 (16%), Positives = 155/481 (32%), Gaps = 47/481 (9%)

Query: 338 PSSIARLCYLKEFDLSGNNLTGSLPEILQGTDLCVSSNSPLPSLISMRLGNNHLKGKLPE 397
              +     L+   L  + +     +              L SL  + L +NHL      
Sbjct: 43  HGDLRACANLQVLILKSSRINTIEGDAFYS----------LGSLEHLDLSDNHLSSLSSS 92

Query: 398 WLSQLENLVELTLSYNLLQG-PIPASLGNLKNLTKLNLPGNQLNGTLPE-TLGSLPELSV 455
           W   L +L  L L  N  Q   + +   NL NL  L +   +    +       L  L+ 
Sbjct: 93  WFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNE 152

Query: 456 LDVSSNSLTGIISEIHFSRLSKLKFLGLSSNSFILNVSSSWIPPFQVQSLNMRSCQLGPS 515
           L++ + SL    S+     +  +  L L  +     +         V+ L +R   L   
Sbjct: 153 LEIKALSLRNYQSQS-LKSIRDIHHLTLHLSESAFLLEIFADILSSVRYLELRDTNLARF 211

Query: 516 FPSWLKTQQGVSFLDFSNASISGPIPNWFWDISSKLSLLNVSLNQLQGQLPNPLNIAPFA 575
             S L   +  S +       S  + +  ++   KL    + L++++        +  F 
Sbjct: 212 QFSPLPVDEVSSPMKKLAFRGSV-LTDESFNELLKLLRYILELSEVEFDDCTLNGLGDFN 270

Query: 576 DVDFRSNLLEGPIPLPIVEIELLDLSNNHFSGPIPQNISGSMPNLIFLSVSGNRLTGKIP 635
             +   +++     +  V I  L +   +        +   +  +  ++V  +++     
Sbjct: 271 PSES--DVVSELGKVETVTIRRLHIPQFYLF-YDLSTVYSLLEKVKRITVENSKVFLVPC 327

Query: 636 GSIGEMQLLQVIDLSRNSISGSI---SSSIGNCTFLKVLDLSYSSLS--GVIPASLGQLT 690
                ++ L+ +DLS N +       S+  G    L+ L LS + L         L  L 
Sbjct: 328 SFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLK 387

Query: 691 RLQSLHLNNNKLTGNLPSSFQNLTSLETLDLGNNRFSGNIPSLLGNGFVGLRILSLRSNA 750
            L SL ++ N     +P S Q    +  L+L +      I  +       L +L + +N 
Sbjct: 388 NLTSLDISRNTFH-PMPDSCQWPEKMRFLNLSST----GIRVVKTCIPQTLEVLDVSNNN 442

Query: 751 FSGEIPSKLSNL-------------------SSLQVLDLAENNLTGSIPGSVGDLKAMAH 791
                   L  L                     L V+ ++ N L     G    L ++  
Sbjct: 443 LD-SFSLFLPRLQELYISRNKLKTLPDASLFPVLLVMKISRNQLKSVPDGIFDRLTSLQK 501

Query: 792 V 792
           +
Sbjct: 502 I 502

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score =  162 bits (413), Expect = 2e-42
 Identities = 100/586 (17%), Positives = 189/586 (32%), Gaps = 85/586 (14%)

Query: 196 NLPNLTELHLSVCGLTGSITSITPVNLTSPAVLDLSLNHFNSLFPNWLVNISTLVYVDLS 255
           +              T SI S     +     LDLS N    +    L   + L  + L 
Sbjct: 3   SCDASGVCDGRSRSFT-SIPSGLTAAMK---SLDLSFNKITYIGHGDLRACANLQVLILK 58

Query: 256 DCDLYGRIPIG-FGELPNLQYLSLAGNNNLSGSCSQLFRGSWKKIQILNFASNKLHGKLP 314
              +   I    F  L +L++L L+ +N+LS   S  F      ++ LN   N       
Sbjct: 59  SSRI-NTIEGDAFYSLGSLEHLDLS-DNHLSSLSSSWFGPL-SSLKYLNLMGNPY----- 110

Query: 315 SSVANMTSLTNFDLFDKKVEGGIPSSIARLCYLKEFDLSGNNLTGSLPEILQGTDLCVSS 374
                  +L    LF              L  L+   +        +             
Sbjct: 111 ------QTLGVTSLFPN------------LTNLQTLRIGNVETFSEIRR---------ID 143

Query: 375 NSPLPSLISMRLGNNHLKGKLPEWLSQLENLVELTLSYNLLQGPIPASLGNLKNLTKLNL 434
            + L SL  + +    L+    + L  + ++  LTL  +     +      L ++  L L
Sbjct: 144 FAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESAFLLEIFADILSSVRYLEL 203

Query: 435 PGNQLNGTLPETLGSLPELSVLDVSSNSLTGIISEIHFSRLSKLKFLGLSSNSF-ILNVS 493
               L       L      S +   +   + ++++  F+ L KL    L  +     + +
Sbjct: 204 RDTNLARFQFSPLPVDEVSSPMKKLAFRGS-VLTDESFNELLKLLRYILELSEVEFDDCT 262

Query: 494 SSWIPPFQVQSLNMRSCQLGPSFPSWLKTQQGVSFLDFSNASISGPIPNWFWDISSKLSL 553
            + +  F     ++ S        +       +  L      +     +  + +  K+  
Sbjct: 263 LNGLGDFNPSESDVVSELGKVETVT-------IRRLHIPQFYLF-YDLSTVYSLLEKVKR 314

Query: 554 LNVSLNQLQGQLPNPLNIAPFADVDFRSNLLEGPIPLPIVEIELLDLSNNHFS--GPIPQ 611
           + V  +++                     L+       +  +E LDLS N          
Sbjct: 315 ITVENSKVF--------------------LVPCSFSQHLKSLEFLDLSENLMVEEYLKNS 354

Query: 612 NISGSMPNLIFLSVSGNRLT--GKIPGSIGEMQLLQVIDLSRNSISGSISSSIGNCTFLK 669
              G+ P+L  L +S N L    K    +  ++ L  +D+SRN+    +  S      ++
Sbjct: 355 ACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFH-PMPDSCQWPEKMR 413

Query: 670 VLDLSYSSLSGVIPASLGQLTRLQSLHLNNNKLTGNLPSSFQNLTSLETLDLGNNRFSGN 729
            L+LS + +  V+   +     L+ L ++NN L     S    L  L+ L +  N+    
Sbjct: 414 FLNLSSTGIR-VVKTCI--PQTLEVLDVSNNNLD----SFSLFLPRLQELYISRNKLK-T 465

Query: 730 IPSLLGNGFVGLRILSLRSNAFSGEIPSKLSNLSSLQVLDLAENNL 775
           +P    + F  L ++ +  N            L+SLQ + L  N  
Sbjct: 466 LPD--ASLFPVLLVMKISRNQLKSVPDGIFDRLTSLQKIWLHTNPW 509

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score =  149 bits (378), Expect = 6e-38
 Identities = 105/539 (19%), Positives = 189/539 (35%), Gaps = 63/539 (11%)

Query: 98  LEYLDLSFNTFNDIPIPEFLGSLENLQYLNLSEAGFTGVVPSSLGNLHRLQYFDVSA-EL 156
           ++ LDLSFN    I     L +  NLQ L L  +    +   +  +L  L++ D+S   L
Sbjct: 28  MKSLDLSFNKITYIG-HGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHL 86

Query: 157 FALSADSLDWLTGLVSLKHLAMNRVDLSLVGSEWLGILKNLPNLTELHLSVCGLTGSITS 216
            +LS+     L+ L  L +L  N             +  NL NL  L +        I  
Sbjct: 87  SSLSSSWFGPLSSLKYL-NLMGNP----YQTLGVTSLFPNLTNLQTLRIGNVETFSEIRR 141

Query: 217 ITPVNLTSPAVLDLSLNHFNSLFPNWLVNISTLVYVDLSDCDLYGRIPIGFGELPNLQYL 276
           I    LTS   L++      +     L +I  + ++ L   +    + I    L +++YL
Sbjct: 142 IDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESAFLLEIFADILSSVRYL 201

Query: 277 SLAGNNNLSGSCSQLFRGSWKKIQILNFASNKLHGKLPSSVANMTSLTNFDLFDKKVEGG 336
            L   N               + Q      +++   +       + LT+    +      
Sbjct: 202 ELRDTN-------------LARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLK--- 245

Query: 337 IPSSIARLCYLKEFDLSGNNLTGSLPEILQGTDLCVSSNSPLPSLISMRLGNNHLKGKLP 396
           +   I  L  ++  D + N L    P       +         ++  + +   +L   L 
Sbjct: 246 LLRYILELSEVEFDDCTLNGLGDFNPSES--DVVSELGKVETVTIRRLHIPQFYLFYDLS 303

Query: 397 EWLSQLENLVELTLSYNLLQGPIPASLGNLKNLTKLNLPGNQLNGTLPET---LGSLPEL 453
              S LE +  +T+  + +     +   +LK+L  L+L  N +     +     G+ P L
Sbjct: 304 TVYSLLEKVKRITVENSKVFLVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSL 363

Query: 454 SVLDVSSNSLTGIISEIH-FSRLSKLKFLGLSSNSF-ILNVSSSWIPPFQVQSLNMRSCQ 511
             L +S N L  +         L  L  L +S N+F  +  S  W    +++ LN+ S  
Sbjct: 364 QTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFHPMPDSCQWPE--KMRFLNLSSTG 421

Query: 512 LGPSFPSWLKTQQGVSFLDFSNASISGPIPNWFWDISSKLSLLNVSLNQLQGQLPNPLNI 571
           +        +T +    LD SN ++       F     +L  L +S N+L+  LP     
Sbjct: 422 IRVVKTCIPQTLE---VLDVSNNNLDS-----FSLFLPRLQELYISRNKLK-TLP----- 467

Query: 572 APFADVDFRSNLLEGPIPLPIVEIELLDLSNNHFSGPIPQNISGSMPNLIFLSVSGNRL 630
               D      L             ++ +S N     +P  I   + +L  + +  N  
Sbjct: 468 ----DASLFPVL------------LVMKISRNQLKS-VPDGIFDRLTSLQKIWLHTNPW 509

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score =  138 bits (349), Expect = 3e-34
 Identities = 97/541 (17%), Positives = 175/541 (32%), Gaps = 89/541 (16%)

Query: 379 PSLISMRLGNNHLKGKLPEWLSQLENLVELTLSYNLLQGPIPASLGNLKNLTKLNLPGNQ 438
            +       +      +P  L+    +  L LS+N +       L    NL  L L  ++
Sbjct: 5   DASGVCDGRSRSFT-SIPSGLT--AAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSR 61

Query: 439 LNGTLPETLGSLPELSVLDVSSNSLTGIISEIHFSRLSKLKFLGLSSNSFI-LNVSSSWI 497
           +N    +   SL  L  LD+S N L+ + S   F  LS LK+L L  N +  L V+S + 
Sbjct: 62  INTIEGDAFYSLGSLEHLDLSDNHLSSL-SSSWFGPLSSLKYLNLMGNPYQTLGVTSLFP 120

Query: 498 PPFQVQSLNMRSCQLGPSFPSW-LKTQQGVSFLDFSNASISGPIPNWFWDISSKLSLLNV 556
               +Q+L + + +               ++ L+    S+          I   +  L +
Sbjct: 121 NLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRD-IHHLTL 179

Query: 557 SLNQLQGQLPNPLNIAPFADVDFRSNLLEGPIPLPIVEIELLDLSNNHFSGPIPQNISGS 616
            L++          +         S             +  L+L + + +     +    
Sbjct: 180 HLSESA-------FLLEIFADILSS-------------VRYLELRDTNLAR-FQFSPLPV 218

Query: 617 MPNLIFLSVSGNRLTGKIPGSIGEMQLLQVIDLSRNSISGSISSSIGNCTFLKVLDLSYS 676
                 +     R +     S  E+  L    L  + +         +CT   + D + S
Sbjct: 219 DEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVE------FDDCTLNGLGDFNPS 272

Query: 677 SLSGVIPASLGQLTRLQSLHLNNNKLTGNLPSSFQNLTSLETLDLGNNRFSGNIPSLLGN 736
               V      +   ++ LH+    L  +L + +  L  ++ + + N++           
Sbjct: 273 ESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVF--------- 323

Query: 737 GFVGLRILSLRSNAFSGEIPSKLSNLSSLQVLDLAENNLTGSIPGSVGDLKAMAHVQNIV 796
                    +  +           +L SL+ LDL+EN +      +     A   +Q + 
Sbjct: 324 --------LVPCSFSQ--------HLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTL- 366

Query: 797 KYLLFGRYRGIYYEENLVINTKGSSKDTPRLFH------FIDLSGNNLHGDFPTQLTKLV 850
                           L  N   S + T  +         +D+S N  H   P       
Sbjct: 367 ---------------VLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFH-PMPDSCQWPE 410

Query: 851 GLVVLNLSRNHIGGQIPENISGLHQLASLDLSSNNLSGGIPSSLSSLSFLGYINLSRNQL 910
            +  LNLS   I   +   I     L  LD+S+NNL       L  L  L    +SRN+L
Sbjct: 411 KMRFLNLSSTGI-RVVKTCI--PQTLEVLDVSNNNLD-SFSLFLPRLQEL---YISRNKL 463

Query: 911 S 911
            
Sbjct: 464 K 464

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score =  122 bits (309), Expect = 3e-29
 Identities = 64/391 (16%), Positives = 137/391 (35%), Gaps = 38/391 (9%)

Query: 98  LEYLDLSFNTFNDIPIPEFLGSLENLQYLNLSEAGFTGVVPSSLGNLHRLQYFDVSA-EL 156
           L  L++   +  +    + L S+ ++ +L L  +    ++      L  ++Y ++    L
Sbjct: 150 LNELEIKALSLRNYQ-SQSLKSIRDIHHLTLHLSESAFLLEIFADILSSVRYLELRDTNL 208

Query: 157 FALSADSLDWLTGLVSLKHLAMNRVDLS-LVGSEWLGILKNLPNLTELHLSVCGLTG--- 212
                  L        +K LA     L+    +E L +L+ +  L+E+    C L G   
Sbjct: 209 ARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDCTLNGLGD 268

Query: 213 -------SITSITPVNLTSPAVLDLSLNHFNSLFPNWLVNISTLVYVDLSDCDLYGRIPI 265
                   ++ +  V   +   L +   +           +  +  + + +  ++  +P 
Sbjct: 269 FNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVF-LVPC 327

Query: 266 G-FGELPNLQYLSLAGNNNLSGSC-SQLFRGSWKKIQILNFASNKLH--GKLPSSVANMT 321
                L +L++L L+ N  +     +   +G+W  +Q L  + N L    K    +  + 
Sbjct: 328 SFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLK 387

Query: 322 SLTNFDLFDKKVEGGIPSSIARLCYLKEFDLSGNNLTGSLPEILQGTDLCVSSNSPLPSL 381
           +LT+ D+        +P S      ++  +LS   +   +                  +L
Sbjct: 388 NLTSLDISRNTFHP-MPDSCQWPEKMRFLNLSSTGIR-VVK------------TCIPQTL 433

Query: 382 ISMRLGNNHLKGKLPEWLSQLENLVELTLSYNLLQGPIPASLGNLKNLTKLNLPGNQLNG 441
             + + NN+L          L  L EL +S N L+  +P +      L  + +  NQL  
Sbjct: 434 EVLDVSNNNLD-SFS---LFLPRLQELYISRNKLKT-LPDA-SLFPVLLVMKISRNQLKS 487

Query: 442 TLPETLGSLPELSVLDVSSNSLTGIISEIHF 472
                   L  L  + + +N        I +
Sbjct: 488 VPDGIFDRLTSLQKIWLHTNPWDCSCPRIDY 518

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score =  166 bits (422), Expect = 3e-44
 Identities = 113/551 (20%), Positives = 195/551 (35%), Gaps = 113/551 (20%)

Query: 372 VSSNSPLPSLISMRLGNNHLKGKLPEWLSQLENLVELTLSYNLLQGPIPASLGNLKNLTK 431
           + +++ L   +   LG  ++   +    + L+ +  L      ++      +  L NLT+
Sbjct: 17  IFTDTALAEKMKTVLGKTNVTDTVS--QTDLDQVTTLQADRLGIKSIDG--VEYLNNLTQ 72

Query: 432 LNLPGNQLNGTLPETLGSLPELSVLDVSSNSLTGIISEIHFSRLSKLKFLGLSSNSFILN 491
           +N   NQL    P  L +L +L  + +++N +  I      + L+ L  L L +N     
Sbjct: 73  INFSNNQLTDITP--LKNLTKLVDILMNNNQIADITP---LANLTNLTGLTLFNNQI--- 124

Query: 492 VSSSWIPPF----QVQSLNMRSCQLGPSFPSWLKTQQGVSFLDFSNASISGPIPNWFWDI 547
              + I P      +  L + S  +  S  S L     +  L F N  ++   P     +
Sbjct: 125 ---TDIDPLKNLTNLNRLELSSNTI--SDISALSGLTSLQQLSFGN-QVTDLKP-----L 173

Query: 548 S--SKLSLLNVSLNQLQGQLPNPLNIAPFADVDFRSNLLEGPIPLPIVEIELLDLSNNHF 605
           +  + L  L++S N++              D+   + L           +E L  +NN  
Sbjct: 174 ANLTTLERLDISSNKVS-------------DISVLAKL---------TNLESLIATNNQI 211

Query: 606 SGPIPQNISGSMPNLIFLSVSGNRLTGKIPGSIGEMQLLQVIDLSRNSISGSISSSIGNC 665
           S   P    G + NL  LS++GN+L     G++  +  L  +DL+ N IS      +   
Sbjct: 212 SDITPL---GILTNLDELSLNGNQLKD--IGTLASLTNLTDLDLANNQISNLAP--LSGL 264

Query: 666 TFLKVLDLSYSSLSGVIPASLGQLTRLQSLHLNNNKLTGNLPSSFQNLTSLETLDLGNNR 725
           T L  L L  + +S + P  L  LT L +L LN N+L     S   NL +L  L L  N 
Sbjct: 265 TKLTELKLGANQISNISP--LAGLTALTNLELNENQLED--ISPISNLKNLTYLTLYFNN 320

Query: 726 FSGNIPSLLGNGFVGLRILSLRSNAFSGEIPSKLSNLSSLQVLDLAENNLTGSIPGSVGD 785
            S   P  + +    L+ L   +N  S    S L+NL+++  L    N ++   P  + +
Sbjct: 321 ISDISP--VSS-LTKLQRLFFYNNKVSD--VSSLANLTNINWLSAGHNQISDLTP--LAN 373

Query: 786 LKAMAHVQNIVKYLLFGRYRGIYYEENLVINTKGSSKDTPRLFHFIDLSGNNLHGDFPTQ 845
           L                          +                 + L+           
Sbjct: 374 LT------------------------RITQ---------------LGLNDQAWTNAPVNY 394

Query: 846 LTKLVGLVVLNLSRNHIGGQI-PENISGLHQLASLDLSSNNLSGGIPSSLSSLSFLGYIN 904
              +    + N  +N  G  I P  IS        D++ N  S        + S    I 
Sbjct: 395 KANVS---IPNTVKNVTGALIAPATISDGGSYTEPDITWNLPS-YTNEVSYTFSQPVTIG 450

Query: 905 LSRNQLSGKIP 915
                 SG + 
Sbjct: 451 KGTTTFSGTVT 461

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score =  152 bits (385), Expect = 2e-39
 Identities = 104/515 (20%), Positives = 191/515 (37%), Gaps = 80/515 (15%)

Query: 270 LPNLQYLSLAGNNNLSGSCSQLFRGSWKKIQILNFASNKLHGKLPSSVANMTSLTNFDLF 329
           L       L G  N++ + SQ       ++  L      +       V  + +LT  +  
Sbjct: 23  LAEKMKTVL-GKTNVTDTVSQ---TDLDQVTTLQADRLGIKS--IDGVEYLNNLTQINFS 76

Query: 330 DKKVEGGIPSSIARLCYLKEFDLSGNNLTGSLPEILQGTDLCVSSNSPLPSLISMRLGNN 389
           + ++     + +  L  L +  ++ N +              ++  + L +L  + L NN
Sbjct: 77  NNQLTD--ITPLKNLTKLVDILMNNNQIAD------------ITPLANLTNLTGLTLFNN 122

Query: 390 HLKGKLPEWLSQLENLVELTLSYNLLQGPIPASLGNLKNLTKLNLPGNQLNGTLPETLGS 449
            +     + L  L NL  L LS N +       L  L +L +L+  GNQ+    P  L +
Sbjct: 123 QITD--IDPLKNLTNLNRLELSSNTISDISA--LSGLTSLQQLSF-GNQVTDLKP--LAN 175

Query: 450 LPELSVLDVSSNSLTGIISEIHFSRLSKLKFLGLSSNSFILNVSSSWIPPF----QVQSL 505
           L  L  LD+SSN ++ I      ++L+ L+ L  ++N        S I P      +  L
Sbjct: 176 LTTLERLDISSNKVSDISV---LAKLTNLESLIATNNQI------SDITPLGILTNLDEL 226

Query: 506 NMRSCQLGPSFPSWLKTQQGVSFLDFSNASISGPIPNWFWDISSKLSLLNVSLNQLQGQL 565
           ++   QL       L +   ++ LD +N  IS   P       +KL+ L +  NQ+    
Sbjct: 227 SLNGNQL--KDIGTLASLTNLTDLDLANNQISNLAPLSGL---TKLTELKLGANQIS--- 278

Query: 566 PNPLNIAPFADVDFRSNLLEGPIPLPIVEIELLDLSNNHFSGPIPQNISGSMPNLIFLSV 625
               NI+P A                +  +  L+L+ N      P     ++ NL +L++
Sbjct: 279 ----NISPLAG---------------LTALTNLELNENQLEDISP---ISNLKNLTYLTL 316

Query: 626 SGNRLTGKIPGSIGEMQLLQVIDLSRNSISGSISSSIGNCTFLKVLDLSYSSLSGVIPAS 685
             N ++   P  +  +  LQ +    N +S    SS+ N T +  L   ++ +S + P  
Sbjct: 317 YFNNISDISP--VSSLTKLQRLFFYNNKVSDV--SSLANLTNINWLSAGHNQISDLTP-- 370

Query: 686 LGQLTRLQSLHLNNNKLTGNLPSSFQNLTSLETLDLGNNRFSGNIPSLLGNGFVGLRILS 745
           L  LTR+  L LN+   T    +   N++   T+           P+ + +G        
Sbjct: 371 LANLTRITQLGLNDQAWTNAPVNYKANVSIPNTVKNVTGALI--APATISDG-GSYTEPD 427

Query: 746 LRSNAFSGEIPSKLSNLSSLQVLDLAENNLTGSIP 780
           +  N             S    +       +G++ 
Sbjct: 428 ITWN-LPSYTNEVSYTFSQPVTIGKGTTTFSGTVT 461

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score =  150 bits (381), Expect = 7e-39
 Identities = 95/538 (17%), Positives = 196/538 (36%), Gaps = 96/538 (17%)

Query: 194 LKNLPNLTELHLSVCGLTGSITSITPVNLTSPAVLDLSLNHFNSLFPNWLVNISTLVYVD 253
              L    +  L    +T +++      +T+   L        S+    +  ++ L  ++
Sbjct: 20  DTALAEKMKTVLGKTNVTDTVSQTDLDQVTT---LQADRLGIKSIDG--VEYLNNLTQIN 74

Query: 254 LSDCDLYGRIPIGFGELPNLQYLSLAGNNNLSGSCSQLFRGSWKKIQILNFASNKLHGKL 313
            S+  L    P+    L  L  + +  NN ++         +   +  L   +N++    
Sbjct: 75  FSNNQLTDITPL--KNLTKLVDILM-NNNQIADITPL---ANLTNLTGLTLFNNQITD-- 126

Query: 314 PSSVANMTSLTNFDLFDKKVEGGIPSSIARLCYLKEFDLSGNNLTGSLPEILQGTDLCVS 373
              + N+T+L   +L    +     S+++ L  L++     N +T   P           
Sbjct: 127 IDPLKNLTNLNRLELSSNTISD--ISALSGLTSLQQLSFG-NQVTDLKPL---------- 173

Query: 374 SNSPLPSLISMRLGNNHLKGKLPEWLSQLENLVELTLSYNLLQGPIPASLGNLKNLTKLN 433
             + L +L  + + +N +       L++L NL  L  + N +    P  LG L NL +L+
Sbjct: 174 --ANLTTLERLDISSNKVSD--ISVLAKLTNLESLIATNNQISDITP--LGILTNLDELS 227

Query: 434 LPGNQLNGTLPETLGSLPELSVLDVSSNSLTGIISEIHFSRLSKLKFLGLSSNSFILNVS 493
           L GNQL      TL SL  L+ LD+++N ++ +      S L+KL  L L +N       
Sbjct: 228 LNGNQLKD--IGTLASLTNLTDLDLANNQISNLAP---LSGLTKLTELKLGANQI----- 277

Query: 494 SSWIPPFQVQSLNMRSCQLGPSFPSWLKTQQGVSFLDFSNASISGPIPNWFWDISSKLSL 553
           S+  P   + +L                       L+ +   +    P    ++   L+ 
Sbjct: 278 SNISPLAGLTALTN---------------------LELNENQLEDISP--ISNL-KNLTY 313

Query: 554 LNVSLNQLQGQLPNPLNIAPFADVDFRSNLLEGPIPLPIVEIELLDLSNNHFSGPIPQNI 613
           L +  N +        +I+P       S+L          +++ L   NN  S       
Sbjct: 314 LTLYFNNIS-------DISPV------SSL---------TKLQRLFFYNNKVSDVSS--- 348

Query: 614 SGSMPNLIFLSVSGNRLTGKIPGSIGEMQLLQVIDLSRNSISGSISSSIGNCTFLKVLDL 673
             ++ N+ +LS   N+++   P  +  +  +  + L+  + + +  +   N +    +  
Sbjct: 349 LANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQAWTNAPVNYKANVSIPNTVKN 406

Query: 674 SYSSLSGVIPASLGQLTRLQSLHLNNNKLTGNLPSSFQNLTSLETLDLGNNRFSGNIP 731
              +L  + PA++          +  N  +     S+   +   T+  G   FSG + 
Sbjct: 407 VTGAL--IAPATISDGGSYTEPDITWNLPSYTNEVSY-TFSQPVTIGKGTTTFSGTVT 461

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score =  140 bits (355), Expect = 1e-35
 Identities = 94/519 (18%), Positives = 171/519 (32%), Gaps = 122/519 (23%)

Query: 399 LSQLENLVELTLSYNLLQGPIPASLGNLKNLTKLNLPGNQLNGTLPETLGSLPELSVLDV 458
            + L   ++  L    +   +     +L  +T L      +     + +  L  L+ ++ 
Sbjct: 20  DTALAEKMKTVLGKTNVTDTVS--QTDLDQVTTLQADRLGIKS--IDGVEYLNNLTQINF 75

Query: 459 SSNSLTGIISEIHFSRLSKLKFLGLSSNSFILNVSSSWIPPFQVQSLNMRSCQLGPSFPS 518
           S+N LT I        L+KL                          + M + Q+  +  +
Sbjct: 76  SNNQLTDIT---PLKNLTKL------------------------VDILMNNNQI--ADIT 106

Query: 519 WLKTQQGVSFLDFSNASISGPIPNWFWDISSKLSLLNVSLNQLQGQLPNPLNIAPFADVD 578
            L     ++ L   N  I+   P         L  L  +LN+L                +
Sbjct: 107 PLANLTNLTGLTLFNNQITDIDP---------LKNL-TNLNRL----------------E 140

Query: 579 FRSNLLEGPIPLP-IVEIELLDLSNNHFSGPIPQNISGSMPNLIFLSVSGNRLTGKIPGS 637
             SN +     L  +  ++ L   N   +   P     ++  L  L +S N+++      
Sbjct: 141 LSSNTISDISALSGLTSLQQLSFGNQ-VTDLKP---LANLTTLERLDISSNKVSD--ISV 194

Query: 638 IGEMQLLQVIDLSRNSISGSISSSIGNCTFLKVLDLSYSSLSGVIPASLGQLTRLQSLHL 697
           + ++  L+ +  + N IS    + +G  T L  L L+ + L  +    L  LT L  L L
Sbjct: 195 LAKLTNLESLIATNNQISDI--TPLGILTNLDELSLNGNQLKDIGT--LASLTNLTDLDL 250

Query: 698 NNNKLTGNLPSSFQNLTSLETLDLGNNRFSGNIPSLLGNGFVGLRILSLRSNAFSGEIPS 757
            NN+++    +    LT L  L LG N+ S NI  L   G   L  L L  N      P 
Sbjct: 251 ANNQISN--LAPLSGLTKLTELKLGANQIS-NISPL--AGLTALTNLELNENQLEDISP- 304

Query: 758 KLSNLSSLQVLDLAENNLTGSIPGSVGDLKAMAHVQNIVKYLLFGRYRGIYYEENLVINT 817
            +SNL +L  L L  NN++   P     + ++  +Q +                      
Sbjct: 305 -ISNLKNLTYLTLYFNNISDISP-----VSSLTKLQRL---------------------- 336

Query: 818 KGSSKDTPRLFHFIDLSGNNLHGDFPTQLTKLVGLVVLNLSRNHIGGQIPENISGLHQLA 877
                             N +     + L  L  +  L+   N I    P  ++ L ++ 
Sbjct: 337 --------------FFYNNKVSD--VSSLANLTNINWLSAGHNQISDLTP--LANLTRIT 378

Query: 878 SLDLSSNNLSGGIPSSLSSLSFLGYINLSRNQLSGKIPF 916
            L L+    +    +  +++S    +      L      
Sbjct: 379 QLGLNDQAWTNAPVNYKANVSIPNTVKNVTGALIAPATI 417

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score =  134 bits (339), Expect = 2e-33
 Identities = 98/538 (18%), Positives = 187/538 (34%), Gaps = 89/538 (16%)

Query: 84  NPYHVVNSDSSGSLLEYLDLSFNTFNDIPIPEFLGSLENLQYLNLSEAGFTGVVPSSLGN 143
            P + + +D++ +      L      D         L+ +  L     G        +  
Sbjct: 12  TPINQIFTDTALAEKMKTVLGKTNVTDTV---SQTDLDQVTTLQADRLGIKS--IDGVEY 66

Query: 144 LHRLQYFDVSAELFALSADSLDWLTGLVSLKHLAMNRVDLSLVGSEWLGILKNLPNLTEL 203
           L+ L   + S          +  L  L  L  + MN   ++ +       L NL NLT L
Sbjct: 67  LNNLTQINFSNNQL----TDITPLKNLTKLVDILMNNNQIADITP-----LANLTNLTGL 117

Query: 204 HLSVCGLTGSITSITPVNLTSPAVLDLSLNHFNSLFPNWLVNISTLVYVDLSDCDLYGRI 263
            L    +T         NL     L+LS N  + +    L  +++L  +   +       
Sbjct: 118 TLFNNQITDIDPLKNLTNLNR---LELSSNTISDISA--LSGLTSLQQLSFGNQVT---D 169

Query: 264 PIGFGELPNLQYLSLAGNNNLSG--SCSQLFRGSWKKIQILNFASNKLHGKLPSSVANMT 321
                 L  L+ L +  +N +S     ++L       ++ L   +N++     + +  +T
Sbjct: 170 LKPLANLTTLERLDI-SSNKVSDISVLAKL-----TNLESLIATNNQISD--ITPLGILT 221

Query: 322 SLTNFDLFDKKVEGGIPSSIARLCYLKEFDLSGNNLTGSLPEILQGTDLCVSSNSPLPSL 381
           +L    L   +++     ++A L  L + DL+ N ++ +L  +           S L  L
Sbjct: 222 NLDELSLNGNQLKD--IGTLASLTNLTDLDLANNQIS-NLAPL-----------SGLTKL 267

Query: 382 ISMRLGNNHLKGKLPEWLSQLENLVELTLSYNLLQGPIPASLGNLKNLTKLNLPGNQLNG 441
             ++LG N +    P  L+ L  L  L L+ N L+   P  + NLKNLT L L  N ++ 
Sbjct: 268 TELKLGANQISNISP--LAGLTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISD 323

Query: 442 TLPETLGSLPELSVLDVSSNSLTGIISEIHFSRLSKLKFLGLSSNSFILNVSSSWIPPFQ 501
             P  + SL +L  L   +N ++ + S    + L+ + +L    N       S   P   
Sbjct: 324 ISP--VSSLTKLQRLFFYNNKVSDVSS---LANLTNINWLSAGHNQI-----SDLTPLAN 373

Query: 502 VQSLNMRSCQLGPSFPSWLKTQQGVSFLDFSNASISGPIPNWFWDISSKLSLLNVSLNQL 561
           +  +                       L  ++ + +    N+     + +S+ N   N  
Sbjct: 374 LTRIT---------------------QLGLNDQAWTNAPVNYK----ANVSIPNTVKNVT 408

Query: 562 QGQLPNPL--NIAPFADVDFRSNLLEGP--IPLPIVEIELLDLSNNHFSGPIPQNISG 615
              +      +   + + D   NL      +     +   +      FSG + Q +  
Sbjct: 409 GALIAPATISDGGSYTEPDITWNLPSYTNEVSYTFSQPVTIGKGTTTFSGTVTQPLKA 466

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score =  132 bits (333), Expect = 1e-32
 Identities = 86/392 (21%), Positives = 165/392 (42%), Gaps = 49/392 (12%)

Query: 529 LDFSNASISGPIPNWFWDISSKLSLLNVSLNQLQGQLPNPLNIAPF-ADVDFRSNLLEGP 587
                 +++  +       +    +  +  ++L  +  + +        ++F +N L   
Sbjct: 29  TVLGKTNVTDTVS-----QTDLDQVTTLQADRLGIKSIDGVEYLNNLTQINFSNNQLTDI 83

Query: 588 IPLP-IVEIELLDLSNNHFSGPIPQNISGSMPNLIFLSVSGNRLTGKIPGSIGEMQLLQV 646
            PL  + ++  + ++NN  +   P     ++ NL  L++  N++T   P  +  +  L  
Sbjct: 84  TPLKNLTKLVDILMNNNQIADITPL---ANLTNLTGLTLFNNQITDIDP--LKNLTNLNR 138

Query: 647 IDLSRNSISGSISSSIGNCTFLKVLDLSYSSLSGVIPASLGQLTRLQSLHLNNNKLTGNL 706
           ++LS N+IS    S++   T L+ L      ++ + P  L  LT L+ L +++NK++   
Sbjct: 139 LELSSNTISDI--SALSGLTSLQQLSFGNQ-VTDLKP--LANLTTLERLDISSNKVSD-- 191

Query: 707 PSSFQNLTSLETLDLGNNRFSGNIPSLLGNGFVGLRILSLRSNAFSGEIPSKLSNLSSLQ 766
            S    LT+LE+L   NN+ S +I  L       L  LSL  N         L++L++L 
Sbjct: 192 ISVLAKLTNLESLIATNNQIS-DITPL--GILTNLDELSLNGNQLKD--IGTLASLTNLT 246

Query: 767 VLDLAENNLTGSIPGSVGDLKAMAHVQNIVKYLLFGRYRGIYYEENLVINTKGSSKDTPR 826
            LDLA N ++   P  +  L  +                 +    N + N    +     
Sbjct: 247 DLDLANNQISNLAP--LSGLTKL---------------TELKLGANQISNISPLAG-LTA 288

Query: 827 LFHFIDLSGNNLHGDFPTQLTKLVGLVVLNLSRNHIGGQIPENISGLHQLASLDLSSNNL 886
           L   ++L+ N L     + ++ L  L  L L  N+I    P  +S L +L  L   +N +
Sbjct: 289 L-TNLELNENQLED--ISPISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFYNNKV 343

Query: 887 SGGIPSSLSSLSFLGYINLSRNQLSGKIPFEG 918
           S    SSL++L+ + +++   NQ+S   P   
Sbjct: 344 SD--VSSLANLTNINWLSAGHNQISDLTPLAN 373

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score =  125 bits (316), Expect = 2e-30
 Identities = 79/369 (21%), Positives = 133/369 (36%), Gaps = 65/369 (17%)

Query: 551 LSLLNVSLNQLQGQLPNPLNIAPFADVDFRSNLLEGPIPL-PIVEIELLDLSNNHFSGPI 609
           L    ++ +    Q+     +A           +   +    + ++  L           
Sbjct: 3   LGSATITQDTPINQIFTDTALAEKMKTVLGKTNVTDTVSQTDLDQVTTLQADRLGIKSID 62

Query: 610 PQNISGSMPNLIFLSVSGNRLTGKIPGSIGEMQLLQVIDLSRNSISGSISSSIGNCTFLK 669
                  + NL  ++ S N+LT   P  +  +  L  I ++ N I+    + + N T L 
Sbjct: 63  GV---EYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADI--TPLANLTNLT 115

Query: 670 VLDLSYSSLSGVIPASLGQLTRLQSLHLNNNKLTGNLPSSFQNLTSLETLDLGNNRFSGN 729
            L L  + ++ + P  L  LT L  L L++N ++    S+   LTSL+ L  GN     +
Sbjct: 116 GLTLFNNQITDIDP--LKNLTNLNRLELSSNTISD--ISALSGLTSLQQLSFGNQVT--D 169

Query: 730 IPSLLGNGFVGLRILSLRSNAFSGEIPSKLSNLSSLQVLDLAENNLTGSIPGSVGDLKAM 789
           +  L       L  L + SN  S    S L+ L++L+ L    N ++   P  +G L  +
Sbjct: 170 LKPL--ANLTTLERLDISSNKVSD--ISVLAKLTNLESLIATNNQISDITP--LGILTNL 223

Query: 790 AHVQNIVKYLLFGRYRGIYYEENLVINTKGSSKDTPRLFHFIDLSGNNLHGDFPTQLTKL 849
                                                    + L+GN L       L  L
Sbjct: 224 ---------------------------------------DELSLNGNQLKD--IGTLASL 242

Query: 850 VGLVVLNLSRNHIGGQIPENISGLHQLASLDLSSNNLSGGIPSSLSSLSFLGYINLSRNQ 909
             L  L+L+ N I       +SGL +L  L L +N +S    S L+ L+ L  + L+ NQ
Sbjct: 243 TNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQISN--ISPLAGLTALTNLELNENQ 298

Query: 910 LSGKIPFEG 918
           L    P   
Sbjct: 299 LEDISPISN 307

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 66.5 bits (163), Expect = 2e-11
 Identities = 40/228 (17%), Positives = 69/228 (30%), Gaps = 54/228 (23%)

Query: 691 RLQSLHLNNNKLTGNLPSSFQNLTSLETLDLGNNRFSGNIPSLLGNGFVGLRILSLRSNA 750
            L S  +  +     +  +   L       LG    +  +          +  L      
Sbjct: 2   PLGSATITQDTPINQI-FTDTALAEKMKTVLGKTNVTDTVSQ---TDLDQVTTLQADRLG 57

Query: 751 FSGEIPSKLSNLSSLQVLDLAENNLTGSIPGSVGDLKAMAHVQNIVKYLLFGRYRGIYYE 810
                   +  L++L  ++ + N LT   P     LK +  + +I               
Sbjct: 58  IK--SIDGVEYLNNLTQINFSNNQLTDITP-----LKNLTKLVDI--------------- 95

Query: 811 ENLVINTKGSSKDTPRLFHFIDLSGNNLHGDFPTQLTKLVGLVVLNLSRNHIGGQIPENI 870
                                 ++ N +    P  L  L  L  L L  N I     + +
Sbjct: 96  ---------------------LMNNNQIADITP--LANLTNLTGLTLFNNQITD--IDPL 130

Query: 871 SGLHQLASLDLSSNNLSGGIPSSLSSLSFLGYINLSRNQLSGKIPFEG 918
             L  L  L+LSSN +S    S+LS L+ L  ++   NQ++   P   
Sbjct: 131 KNLTNLNRLELSSNTISD--ISALSGLTSLQQLSFG-NQVTDLKPLAN 175

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score =  150 bits (381), Expect = 7e-40
 Identities = 76/382 (19%), Positives = 152/382 (39%), Gaps = 71/382 (18%)

Query: 399 LSQLENLVELTLSYNLLQGPIPASLGNLKNLTKLNLPGNQLNGTLPETLGSLPELSVLDV 458
            + L   +   L    +   +      L+++TKL + G ++     + +  L  L  L++
Sbjct: 18  DADLAEGIRAVLQKASVTDVVT--QEELESITKLVVAGEKVAS--IQGIEYLTNLEYLNL 73

Query: 459 SSNSLTGIISEIHFSRLSKLKFLGLSSNSFILNVSSSWIPPFQVQSLNMRSCQLGPSFPS 518
           + N +T I      S L KL  L + +N        + I   Q    N+ +         
Sbjct: 74  NGNQITDISP---LSNLVKLTNLYIGTNKI------TDISALQ----NLTN--------- 111

Query: 519 WLKTQQGVSFLDFSNASISGPIPNWFWDISSKLSLLNVSLNQLQGQLPNPLNIAPFADVD 578
            L+       L  +  +IS   P       +K+  LN+  N          +++P     
Sbjct: 112 -LRE------LYLNEDNISDISPL---ANLTKMYSLNLGANHNLS------DLSPL---- 151

Query: 579 FRSNLLEGPIPLPIVEIELLDLSNNHFSGPIPQNISGSMPNLIFLSVSGNRLTGKIPGSI 638
             SN+           +  L ++ +      P     ++ +L  LS++ N++    P  +
Sbjct: 152 --SNM---------TGLNYLTVTESKVKDVTP---IANLTDLYSLSLNYNQIEDISP--L 195

Query: 639 GEMQLLQVIDLSRNSISGSISSSIGNCTFLKVLDLSYSSLSGVIPASLGQLTRLQSLHLN 698
             +  L       N I+    + + N T L  L +  + ++ + P  L  L++L  L + 
Sbjct: 196 ASLTSLHYFTAYVNQITDI--TPVANMTRLNSLKIGNNKITDLSP--LANLSQLTWLEIG 251

Query: 699 NNKLTGNLPSSFQNLTSLETLDLGNNRFSGNIPSLLGNGFVGLRILSLRSNAFSGEIPSK 758
            N+++    ++ ++LT L+ L++G+N+ S +I  L  N    L  L L +N    E    
Sbjct: 252 TNQISD--INAVKDLTKLKMLNVGSNQIS-DISVL--NNLSQLNSLFLNNNQLGNEDMEV 306

Query: 759 LSNLSSLQVLDLAENNLTGSIP 780
           +  L++L  L L++N++T   P
Sbjct: 307 IGGLTNLTTLFLSQNHITDIRP 328

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score =  148 bits (375), Expect = 4e-39
 Identities = 85/440 (19%), Positives = 159/440 (36%), Gaps = 111/440 (25%)

Query: 339 SSIARLCYLKEFDLSGNNLTGSLPEILQGTDLCVSSNSPLPSLISMRLGNNHLKGKLPEW 398
              A L       L   ++T  + +              L S+  + +    +   +   
Sbjct: 16  FPDADLAEGIRAVLQKASVTDVVTQ------------EELESITKLVVAGEKVA-SIQG- 61

Query: 399 LSQLENLVELTLSYNLLQGPIPASLGNLKNLTKLNLPGNQLNGTLPETLGSLPELSVLDV 458
           +  L NL  L L+ N +    P  L NL  LT L +  N++  T    L +L  L  L +
Sbjct: 62  IEYLTNLEYLNLNGNQITDISP--LSNLVKLTNLYIGTNKI--TDISALQNLTNLRELYL 117

Query: 459 SSNSLTGIISEIHFSRLSKLKFLGLSSNSFILNVSSSWIPPFQVQSLNMRSCQLGPSFPS 518
           + ++++ I      + L+K+  L L +N  +                         S  S
Sbjct: 118 NEDNISDISP---LANLTKMYSLNLGANHNL-------------------------SDLS 149

Query: 519 WLKTQQGVSFLDFSNASISGPIPNWFWDIS--SKLSLLNVSLNQLQGQLPNPLNIAPFAD 576
            L    G+++L  + + +    P     I+  + L  L+++ NQ++       +I+P   
Sbjct: 150 PLSNMTGLNYLTVTESKVKDVTP-----IANLTDLYSLSLNYNQIE-------DISPL-- 195

Query: 577 VDFRSNLLEGPIPLPIVEIELLDLSNNHFSGPIPQNISGSMPNLIFLSVSGNRLTGKIPG 636
               ++L           +       N  +   P     +M  L  L +  N++T   P 
Sbjct: 196 ----ASL---------TSLHYFTAYVNQITDITPV---ANMTRLNSLKIGNNKITDLSP- 238

Query: 637 SIGEMQLLQVIDLSRNSISGSISSSIGNCTFLKVLDLSYSSLSGVIPASLGQLTRLQSLH 696
            +  +  L  +++  N IS    +++ + T LK+L++  + +S +    L  L++L SL 
Sbjct: 239 -LANLSQLTWLEIGTNQISDI--NAVKDLTKLKMLNVGSNQISDISV--LNNLSQLNSLF 293

Query: 697 LNNNKLTGNLPSSFQNLTSLETLDLGNNRFSGNIPSLLGNGFVGLRILSLRSNAFSGEIP 756
           LNNN+L          LT+L TL L  N  +   P                         
Sbjct: 294 LNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRP------------------------- 328

Query: 757 SKLSNLSSLQVLDLAENNLT 776
             L++LS +   D A   + 
Sbjct: 329 --LASLSKMDSADFANQVIK 346

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score =  141 bits (357), Expect = 1e-36
 Identities = 73/371 (19%), Positives = 145/371 (39%), Gaps = 43/371 (11%)

Query: 549 SKLSLLNVSLNQLQGQLPNPLNIAPFADVDFRSNLLEGPIPL-PIVEIELLDLSNNHFSG 607
           + L+ L   +NQ+     +            +   +   +    +  I  L ++    + 
Sbjct: 3   ATLATLPAPINQIFP-DADLAEGI---RAVLQKASVTDVVTQEELESITKLVVAGEKVAS 58

Query: 608 PIPQNISGSMPNLIFLSVSGNRLTGKIPGSIGEMQLLQVIDLSRNSISGSISSSIGNCTF 667
                    + NL +L+++GN++T   P  +  +  L  + +  N I+    S++ N T 
Sbjct: 59  IQG---IEYLTNLEYLNLNGNQITDISP--LSNLVKLTNLYIGTNKIT--DISALQNLTN 111

Query: 668 LKVLDLSYSSLSGVIPASLGQLTRLQSLHLNNNKLTGNLPSSFQNLTSLETLDLGNNRFS 727
           L+ L L+  ++S + P  L  LT++ SL+L  N    +  S   N+T L  L +  ++  
Sbjct: 112 LRELYLNEDNISDISP--LANLTKMYSLNLGANHNLSD-LSPLSNMTGLNYLTVTESKVK 168

Query: 728 GNIPSLLGNGFVGLRILSLRSNAFSGEIPSKLSNLSSLQVLDLAENNLTGSIPGSVGDLK 787
            ++  +       L  LSL  N      P  L++L+SL       N +T   P  V ++ 
Sbjct: 169 -DVTPI--ANLTDLYSLSLNYNQIEDISP--LASLTSLHYFTAYVNQITDITP--VANMT 221

Query: 788 AMAHVQNIVKYLLFGRYRGIYYEENLVINTKGSSKDTPRLFHFIDLSGNNLHGDFPTQLT 847
            +                 +    N + +    +    +L  ++++  N +       + 
Sbjct: 222 RL---------------NSLKIGNNKITDLSPLAN-LSQL-TWLEIGTNQISD--INAVK 262

Query: 848 KLVGLVVLNLSRNHIGGQIPENISGLHQLASLDLSSNNLSGGIPSSLSSLSFLGYINLSR 907
            L  L +LN+  N I       ++ L QL SL L++N L       +  L+ L  + LS+
Sbjct: 263 DLTKLKMLNVGSNQISD--ISVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQ 320

Query: 908 NQLSGKIPFEG 918
           N ++   P   
Sbjct: 321 NHITDIRPLAS 331

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score =  138 bits (351), Expect = 7e-36
 Identities = 75/461 (16%), Positives = 162/461 (35%), Gaps = 118/461 (25%)

Query: 429 LTKLNLPGNQLNGTLPETLGSLPELSVLDVSSNSLTGIISEIHFSRLSKLKFLGLSSNSF 488
              L      +N   P     L E     +   S+T +++      L  +  L ++    
Sbjct: 2   AATLATLPAPINQIFP--DADLAEGIRAVLQKASVTDVVT---QEELESITKLVVAGE-- 54

Query: 489 ILNVSSSWIPPFQVQSLNMRSCQLGPSFPSWLKTQQGVSFLDFSNASISGPIPNWFWDIS 548
              V+S  I   +     + + +                +L+ +   I+   P     +S
Sbjct: 55  --KVAS--IQGIE----YLTNLE----------------YLNLNGNQITDISP-----LS 85

Query: 549 --SKLSLLNVSLNQLQGQLPNPLNIAPFADVDFRSNLLEGPIPLPIVEIELLDLSNNHFS 606
              KL+ L +  N++        +I+   +               +  +  L L+ ++ S
Sbjct: 86  NLVKLTNLYIGTNKIT-------DISALQN---------------LTNLRELYLNEDNIS 123

Query: 607 GPIPQNISGSMPNLIFLSVSGNRLTGKIPGSIGEMQLLQVIDLSRNSISGSISSSIGNCT 666
              P     ++  +  L++  N     +   +  M  L  + ++ + +     + I N T
Sbjct: 124 DISP---LANLTKMYSLNLGANHNLSDLS-PLSNMTGLNYLTVTESKVKDV--TPIANLT 177

Query: 667 FLKVLDLSYSSLSGVIPASLGQLTRLQSLHLNNNKLTGNLPSSFQNLTSLETLDLGNNRF 726
            L  L L+Y+ +  + P  L  LT L       N++T    +   N+T L +L +GNN+ 
Sbjct: 178 DLYSLSLNYNQIEDISP--LASLTSLHYFTAYVNQITD--ITPVANMTRLNSLKIGNNKI 233

Query: 727 SGNIPSLLGNGFVGLRILSLRSNAFSGEIPSKLSNLSSLQVLDLAENNLTGSIPGSVGDL 786
           + ++  L       L  L + +N  S    + + +L+ L++L++  N ++        D+
Sbjct: 234 T-DLSPL--ANLSQLTWLEIGTNQISD--INAVKDLTKLKMLNVGSNQIS--------DI 280

Query: 787 KAMAHVQNIVKYLLFGRYRGIYYEENLVINTKGSSKDTPRLFHFIDLSGNNLHGDFPTQL 846
             + ++  +                                   + L+ N L  +    +
Sbjct: 281 SVLNNLSQLNS---------------------------------LFLNNNQLGNEDMEVI 307

Query: 847 TKLVGLVVLNLSRNHIGGQIPENISGLHQLASLDLSSNNLS 887
             L  L  L LS+NHI    P  ++ L ++ S D ++  + 
Sbjct: 308 GGLTNLTTLFLSQNHITDIRP--LASLSKMDSADFANQVIK 346

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score =  136 bits (345), Expect = 4e-35
 Identities = 74/390 (18%), Positives = 146/390 (37%), Gaps = 77/390 (19%)

Query: 529 LDFSNASISGPIPNWFWDISSKLSLLNVSLNQLQGQLPNPLNIAPFA------DVDFRSN 582
                AS++  +     +    ++ L V+  ++        +I           ++   N
Sbjct: 27  AVLQKASVTDVVT---QEELESITKLVVAGEKVA-------SIQGIEYLTNLEYLNLNGN 76

Query: 583 LLEGPIPL-PIVEIELLDLSNNHFSGPIPQNISGSMPNLIFLSVSGNRLTGKIPGSIGEM 641
            +    PL  +V++  L +  N  +         ++ NL  L ++ + ++   P  +  +
Sbjct: 77  QITDISPLSNLVKLTNLYIGTNKITDISA---LQNLTNLRELYLNEDNISDISP--LANL 131

Query: 642 QLLQVIDLSRNSISGSISSSIGNCTFLKVLDLSYSSLSGVIPASLGQLTRLQSLHLNNNK 701
             +  ++L  N     +S  + N T L  L ++ S +  V P  +  LT L SL LN N+
Sbjct: 132 TKMYSLNLGANHNLSDLSP-LSNMTGLNYLTVTESKVKDVTP--IANLTDLYSLSLNYNQ 188

Query: 702 LTGNLPSSFQNLTSLETLDLGNNRFSGNIPSLLGNGFVGLRILSLRSNAFSGEIPSKLSN 761
           +     S   +LTSL       N+ + +I  +       L  L + +N  +   P  L+N
Sbjct: 189 IED--ISPLASLTSLHYFTAYVNQIT-DITPV--ANMTRLNSLKIGNNKITDLSP--LAN 241

Query: 762 LSSLQVLDLAENNLTGSIPGSVGDLKAMAHVQNIVKYLLFGRYRGIYYEENLVINTKGSS 821
           LS L  L++  N ++        D+ A+  +  +                          
Sbjct: 242 LSQLTWLEIGTNQIS--------DINAVKDLTKLKM------------------------ 269

Query: 822 KDTPRLFHFIDLSGNNLHGDFPTQLTKLVGLVVLNLSRNHIGGQIPENISGLHQLASLDL 881
                    +++  N +     + L  L  L  L L+ N +G +  E I GL  L +L L
Sbjct: 270 ---------LNVGSNQISD--ISVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFL 318

Query: 882 SSNNLSGGIPSSLSSLSFLGYINLSRNQLS 911
           S N+++      L+SLS +   + +   + 
Sbjct: 319 SQNHITD--IRPLASLSKMDSADFANQVIK 346

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score =  136 bits (345), Expect = 4e-35
 Identities = 82/389 (21%), Positives = 146/389 (37%), Gaps = 53/389 (13%)

Query: 101 LDLSFNTFNDIPIPEFLGSLENLQYLNLSEAGFTGVVPSSLGNLHRLQYFDVSAELFALS 160
           L       N I        L       L +A  T VV      L  +    V+ E  A  
Sbjct: 5   LATLPAPINQI---FPDADLAEGIRAVLQKASVTDVVT--QEELESITKLVVAGEKVA-- 57

Query: 161 ADSLDWLTGLVSLKHLAMNRVDLSLVGSEWLGILKNLPNLTELHLSVCGLTGSITSITPV 220
             S+  +  L +L++L +N   ++ +       L NL  LT L++        IT I+ +
Sbjct: 58  --SIQGIEYLTNLEYLNLNGNQITDISP-----LSNLVKLTNLYIGTN----KITDISAL 106

Query: 221 -NLTSPAVLDLSLNHFNSLFPNWLVNISTLVYVDLSDCDLYGRIPIGFGELPNLQYLSLA 279
            NLT+   L L+ ++ + + P  L N++ +  ++L               +  L YL++ 
Sbjct: 107 QNLTNLRELYLNEDNISDISP--LANLTKMYSLNLGANHN-LSDLSPLSNMTGLNYLTVT 163

Query: 280 GNNNLSGSC--SQLFRGSWKKIQILNFASNKLHGKLPSSVANMTSLTNFDLFDKKVEGGI 337
             + +      + L       +  L+   N++     S +A++TSL  F  +  ++    
Sbjct: 164 -ESKVKDVTPIANL-----TDLYSLSLNYNQIED--ISPLASLTSLHYFTAYVNQITD-- 213

Query: 338 PSSIARLCYLKEFDLSGNNLTGSLPEILQGTDLCVSSNSPLPSLISMRLGNNHLKGKLPE 397
            + +A +  L    +  N +T             +S  + L  L  + +G N +      
Sbjct: 214 ITPVANMTRLNSLKIGNNKITD------------LSPLANLSQLTWLEIGTNQISD--IN 259

Query: 398 WLSQLENLVELTLSYNLLQGPIPASLGNLKNLTKLNLPGNQLNGTLPETLGSLPELSVLD 457
            +  L  L  L +  N +       L NL  L  L L  NQL     E +G L  L+ L 
Sbjct: 260 AVKDLTKLKMLNVGSNQISDISV--LNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLF 317

Query: 458 VSSNSLTGIISEIHFSRLSKLKFLGLSSN 486
           +S N +T I      + LSK+     ++ 
Sbjct: 318 LSQNHITDIRP---LASLSKMDSADFANQ 343

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score =  130 bits (329), Expect = 5e-33
 Identities = 78/387 (20%), Positives = 143/387 (36%), Gaps = 81/387 (20%)

Query: 405 LVELTLSYNLLQGPIPASLGNLKNLTKLNLPGNQLNGTLPETLGSLPELSVLDVSSNSLT 464
              L      +    P    +L    +  L    +      T   L  ++ L V+   + 
Sbjct: 2   AATLATLPAPINQIFP--DADLAEGIRAVLQKASVTD--VVTQEELESITKLVVAGEKVA 57

Query: 465 GIISEIHFSRLSKLKFLGLSSNSFILNVSSSWIPPF----QVQSLNMRSCQLGPSFPSWL 520
            I        L+ L++L L+ N        + I P     ++ +L + + ++        
Sbjct: 58  SIQG---IEYLTNLEYLNLNGNQI------TDISPLSNLVKLTNLYIGTNKI-------- 100

Query: 521 KTQQGVSFLDFSNASISGPIPNWFWDISSKLSLLNVSLNQLQGQLPNPLNIAPFADVDFR 580
                         +    + N      + L  L ++ + +         I+P       
Sbjct: 101 --------------TDISALQN-----LTNLRELYLNEDNISD-------ISPL------ 128

Query: 581 SNLLEGPIPLPIVEIELLDLSNNHFSGPIPQNISGSMPNLIFLSVSGNRLTGKIPGSIGE 640
           +NL          ++  L+L  NH        +S  M  L +L+V+ +++    P  I  
Sbjct: 129 ANL---------TKMYSLNLGANHNLS-DLSPLSN-MTGLNYLTVTESKVKDVTP--IAN 175

Query: 641 MQLLQVIDLSRNSISGSISSSIGNCTFLKVLDLSYSSLSGVIPASLGQLTRLQSLHLNNN 700
           +  L  + L+ N I     S + + T L       + ++ + P  +  +TRL SL + NN
Sbjct: 176 LTDLYSLSLNYNQIEDI--SPLASLTSLHYFTAYVNQITDITP--VANMTRLNSLKIGNN 231

Query: 701 KLTGNLPSSFQNLTSLETLDLGNNRFSGNIPSLLGNGFVGLRILSLRSNAFSGEIPSKLS 760
           K+T    S   NL+ L  L++G N+ S +I ++       L++L++ SN  S    S L+
Sbjct: 232 KITD--LSPLANLSQLTWLEIGTNQIS-DINAV--KDLTKLKMLNVGSNQISD--ISVLN 284

Query: 761 NLSSLQVLDLAENNLTGSIPGSVGDLK 787
           NLS L  L L  N L       +G L 
Sbjct: 285 NLSQLNSLFLNNNQLGNEDMEVIGGLT 311

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score =  127 bits (321), Expect = 6e-32
 Identities = 67/342 (19%), Positives = 134/342 (39%), Gaps = 42/342 (12%)

Query: 98  LEYLDLSFNTFNDIPIPEFLGSLENLQYLNLSEAGFTGVVPSSLGNLHRLQYFDVSAELF 157
           +  L ++      I     +  L NL+YLNL+    T +  S L NL +L    +     
Sbjct: 46  ITKLVVAGEKVASIQ---GIEYLTNLEYLNLNGNQITDI--SPLSNLVKLTNLYIGTNKI 100

Query: 158 ALSADSLDWLTGLVSLKHLAMNRVDLSLVGSEWLGILKNLPNLTELHLSVCGLTGSITSI 217
                 +  L  L +L+ L +N  ++S +       L NL  +  L+L        ++ +
Sbjct: 101 T----DISALQNLTNLRELYLNEDNISDISP-----LANLTKMYSLNLGANHNLSDLSPL 151

Query: 218 TPVNLTSPAVLDLSLNHFNSLFPNWLVNISTLVYVDLSDCDLYGRIPIGFGELPNLQYLS 277
           +  N+T    L ++ +    + P  + N++ L  + L+   +          L +L Y +
Sbjct: 152 S--NMTGLNYLTVTESKVKDVTP--IANLTDLYSLSLNYNQI--EDISPLASLTSLHYFT 205

Query: 278 LAGNNNLSGSCSQLFRGSWKKIQILNFASNKLHGKLPSSVANMTSLTNFDLFDKKVEGGI 337
               N ++         +  ++  L   +NK+     S +AN++ LT  ++   ++    
Sbjct: 206 A-YVNQITDITPV---ANMTRLNSLKIGNNKITD--LSPLANLSQLTWLEIGTNQISD-- 257

Query: 338 PSSIARLCYLKEFDLSGNNLTGSLPEILQGTDLCVSSNSPLPSLISMRLGNNHLKGKLPE 397
            +++  L  LK  ++  N ++  +  +           + L  L S+ L NN L  +  E
Sbjct: 258 INAVKDLTKLKMLNVGSNQIS-DISVL-----------NNLSQLNSLFLNNNQLGNEDME 305

Query: 398 WLSQLENLVELTLSYNLLQGPIPASLGNLKNLTKLNLPGNQL 439
            +  L NL  L LS N +    P  L +L  +   +     +
Sbjct: 306 VIGGLTNLTTLFLSQNHITDIRP--LASLSKMDSADFANQVI 345

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score =  119 bits (301), Expect = 2e-29
 Identities = 71/375 (18%), Positives = 144/375 (38%), Gaps = 52/375 (13%)

Query: 194 LKNLPNLTELHLSVCGLTGSITSITPVNLTSPAVLDLSLNHFNSLFPNWLVNISTLVYVD 253
             +L       L    +T  +T     ++T    L ++     S+    +  ++ L Y++
Sbjct: 18  DADLAEGIRAVLQKASVTDVVTQEELESITK---LVVAGEKVASIQG--IEYLTNLEYLN 72

Query: 254 LSDCDLYGRIPIGFGELPNLQYLSLAGNNNLSGSCSQLFRGSWKKIQILNFASNKLHGKL 313
           L+   +    P     L  L  L + G N ++   S L   +   ++ L    + +    
Sbjct: 73  LNGNQITDISP--LSNLVKLTNLYI-GTNKIT-DISAL--QNLTNLRELYLNEDNISD-- 124

Query: 314 PSSVANMTSLTNFDLFDKKVEGGIPSSIARLCYLKEFDLSGNNLTGSLPEILQGTDLCVS 373
            S +AN+T + + +L          S ++ +  L    ++ + +   +  I         
Sbjct: 125 ISPLANLTKMYSLNLGANHNL-SDLSPLSNMTGLNYLTVTESKVK-DVTPI--------- 173

Query: 374 SNSPLPSLISMRLGNNHLKGKLPEWLSQLENLVELTLSYNLLQGPIPASLGNLKNLTKLN 433
             + L  L S+ L  N ++   P  L+ L +L   T   N +    P  + N+  L  L 
Sbjct: 174 --ANLTDLYSLSLNYNQIEDISP--LASLTSLHYFTAYVNQITDITP--VANMTRLNSLK 227

Query: 434 LPGNQLNGTLPETLGSLPELSVLDVSSNSLTGIISEIHFSRLSKLKFLGLSSNSFILNVS 493
           +  N++    P  L +L +L+ L++ +N ++ I +      L+KLK L + SN       
Sbjct: 228 IGNNKITDLSP--LANLSQLTWLEIGTNQISDINA---VKDLTKLKMLNVGSNQI----- 277

Query: 494 SSWIPPF----QVQSLNMRSCQLGPSFPSWLKTQQGVSFLDFSNASISGPIPNWFWDIS- 548
            S I       Q+ SL + + QLG      +     ++ L  S   I+   P     ++ 
Sbjct: 278 -SDISVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRP-----LAS 331

Query: 549 -SKLSLLNVSLNQLQ 562
            SK+   + +   ++
Sbjct: 332 LSKMDSADFANQVIK 346

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 93.0 bits (232), Expect = 2e-20
 Identities = 62/298 (20%), Positives = 117/298 (39%), Gaps = 44/298 (14%)

Query: 98  LEYLDLSFNTFNDIPIPEFLGSLENLQYLNLSEAGFTGVVPSSLGNLHRLQYFDVSAELF 157
           L  L +  N   DI     L +L NL+ L L+E   + +  S L NL ++   ++ A   
Sbjct: 90  LTNLYIGTNKITDIS---ALQNLTNLRELYLNEDNISDI--SPLANLTKMYSLNLGANHN 144

Query: 158 ALSADSLDWLTGLVSLKHLAMNRVDLSLVGSEWLGILKNLPNLTELHLSVCGLTGSITSI 217
                 L  +TGL  L  +  ++V       + +  + NL +L  L L+       I  I
Sbjct: 145 LSDLSPLSNMTGLNYL-TVTESKV-------KDVTPIANLTDLYSLSLNYN----QIEDI 192

Query: 218 TPV-NLTSPAVLDLSLNHFNSLFPNWLVNISTLVYVDLSDCDLYGRIPIGFGELPNLQYL 276
           +P+ +LTS       +N    + P  + N++ L  + + +  +          L  L +L
Sbjct: 193 SPLASLTSLHYFTAYVNQITDITP--VANMTRLNSLKIGNNKI--TDLSPLANLSQLTWL 248

Query: 277 SLAGNN--NLSGSCSQLFRGSWKKIQILNFASNKLHGKLPSSVANMTSLTNFDLFDKKVE 334
            +  N   +++            K+++LN  SN++     S + N++ L +  L + ++ 
Sbjct: 249 EIGTNQISDINAV------KDLTKLKMLNVGSNQISD--ISVLNNLSQLNSLFLNNNQLG 300

Query: 335 GGIPSSIARLCYLKEFDLSGNNLTGSLPEILQGTDLCVSSNSPLPSLISMRLGNNHLK 392
                 I  L  L    LS N++T  +  +           + L  + S    N  +K
Sbjct: 301 NEDMEVIGGLTNLTTLFLSQNHIT-DIRPL-----------ASLSKMDSADFANQVIK 346

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 78.0 bits (193), Expect = 2e-15
 Identities = 35/251 (13%), Positives = 80/251 (31%), Gaps = 77/251 (30%)

Query: 668 LKVLDLSYSSLSGVIPASLGQLTRLQSLHLNNNKLTGNLPSSFQNLTSLETLDLGNNRFS 727
              L    + ++ + P     L       L    +T     + + L S+  L +   + +
Sbjct: 2   AATLATLPAPINQIFP--DADLAEGIRAVLQKASVTD--VVTQEELESITKLVVAGEKVA 57

Query: 728 GNIPSLLGNGFVGLRILSLRSNAFSGEIPSKLSNLSSLQVLDLAENNLTGSIPGSVGDLK 787
            +I  +                            L++L+ L+L  N +T   P  + +L 
Sbjct: 58  -SIQGI--------------------------EYLTNLEYLNLNGNQITDISP--LSNLV 88

Query: 788 AMAHVQNIVKYLLFGRYRGIYYEENLVINTKGSSKDTPRLFHFIDLSGNNLHGDFPTQLT 847
            + +                                       + +  N +     + L 
Sbjct: 89  KLTN---------------------------------------LYIGTNKITD--ISALQ 107

Query: 848 KLVGLVVLNLSRNHIGGQIPENISGLHQLASLDLSSNNLSGGIPSSLSSLSFLGYINLSR 907
            L  L  L L+ ++I       ++ L ++ SL+L +N+      S LS+++ L Y+ ++ 
Sbjct: 108 NLTNLRELYLNEDNISD--ISPLANLTKMYSLNLGANHNLS-DLSPLSNMTGLNYLTVTE 164

Query: 908 NQLSGKIPFEG 918
           +++    P   
Sbjct: 165 SKVKDVTPIAN 175

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 58.7 bits (143), Expect = 4e-09
 Identities = 33/230 (14%), Positives = 65/230 (28%), Gaps = 76/230 (33%)

Query: 692 LQSLHLNNNKLTGNLPSSFQNLTSLETLDLGNNRFSGNIPSLLGNGFVGLRILSLRSNAF 751
             +L      +    P    +L       L     +  +                     
Sbjct: 2   AATLATLPAPINQIFP--DADLAEGIRAVLQKASVTDVVT-------------------- 39

Query: 752 SGEIPSKLSNLSSLQVLDLAENNLTGSIPGSVGDLKAMAHVQNIVKYLLFGRYRGIYYEE 811
                     L S+  L +A   +          ++ + ++ N+                
Sbjct: 40  -------QEELESITKLVVAGEKVA--------SIQGIEYLTNLEY-------------- 70

Query: 812 NLVINTKGSSKDTPRLFHFIDLSGNNLHGDFPTQLTKLVGLVVLNLSRNHIGGQIPENIS 871
                              ++L+GN +     + L+ LV L  L +  N I       + 
Sbjct: 71  -------------------LNLNGNQITD--ISPLSNLVKLTNLYIGTNKI--TDISALQ 107

Query: 872 GLHQLASLDLSSNNLSGGIPSSLSSLSFLGYINLSRNQLSGKIPFEGHMT 921
            L  L  L L+ +N+S    S L++L+ +  +NL  N     +    +MT
Sbjct: 108 NLTNLRELYLNEDNISD--ISPLANLTKMYSLNLGANHNLSDLSPLSNMT 155

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 52.5 bits (127), Expect = 3e-07
 Identities = 29/179 (16%), Positives = 61/179 (34%), Gaps = 49/179 (27%)

Query: 740 GLRILSLRSNAFSGEIPSKLSNLSSLQVLDLAENNLTGSIPGSVGDLKAMAHVQNIVKYL 799
           G   L+      +   P   ++L+      L + ++T  +            +++I K  
Sbjct: 1   GAATLATLPAPINQIFP--DADLAEGIRAVLQKASVTDVVT--------QEELESITK-- 48

Query: 800 LFGRYRGIYYEENLVINTKGSSKDTPRLFHFIDLSGNNLHGDFPTQLTKLVGLVVLNLSR 859
                                          + ++G  +       +  L  L  LNL+ 
Sbjct: 49  -------------------------------LVVAGEKVAS--IQGIEYLTNLEYLNLNG 75

Query: 860 NHIGGQIPENISGLHQLASLDLSSNNLSGGIPSSLSSLSFLGYINLSRNQLSGKIPFEG 918
           N I    P  +S L +L +L + +N ++    S+L +L+ L  + L+ + +S   P   
Sbjct: 76  NQITDISP--LSNLVKLTNLYIGTNKIT--DISALQNLTNLRELYLNEDNISDISPLAN 130

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score =  148 bits (376), Expect = 2e-38
 Identities = 98/578 (16%), Positives = 174/578 (30%), Gaps = 153/578 (26%)

Query: 337 IPSSIARLCYLKEFDLSGNNLTGSLP-EILQGTDLCVS--SNSPLPSLISMRLGNNHLKG 393
           +P     +    E+  + +    + P    +  ++ VS   +        + L N  L  
Sbjct: 26  MPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLDRQAHELELNNLGLS- 84

Query: 394 KLPEWLSQLENLVELTLSYNLLQGPIPASLGNLKNLTKLNLPGNQLNGTLPETLGSLPEL 453
            LPE    LE    L  S N L   +P    +LK+L   N     L+          P L
Sbjct: 85  SLPELPPHLE---SLVASCNSLT-ELPELPQSLKSLLVDNNNLKALSD-------LPPLL 133

Query: 454 SVLDVSSNSLTGIISEIHFSRLSKLKFLGLSSNSFILNVSSSWIPPFQVQSLNMRSCQLG 513
             L VS+N L  +         S LK + + +NS                          
Sbjct: 134 EYLGVSNNQLEKLPE---LQNSSFLKIIDVDNNSL------------------------- 165

Query: 514 PSFPSWLKTQQGVSFLDFSNASISGPIPNWFWDISSKLSLLNVSLNQLQGQLPNPLNIAP 573
              P                                 L  +    NQL+ +LP   N+  
Sbjct: 166 KKLPDLP----------------------------PSLEFIAAGNNQLE-ELPELQNLPF 196

Query: 574 FADVDFRSNLLEGPIPLPIVEIELLDLSNNHFSGPIPQNISGSMPNLIFLSVSGNRLTGK 633
              +   +N L+  +P   + +E +   NN            ++P L  +    N L   
Sbjct: 197 LTAIYADNNSLKK-LPDLPLSLESIVAGNNILEEL---PELQNLPFLTTIYADNNLLK-T 251

Query: 634 IPGSIGEMQLLQVIDLSRNSISGSISSSIGNCTFLKVLDLSYSSLSGVIPASLGQLTRLQ 693
           +P        L+ +++  N ++  +     + TFL V +  +S LS + P        L 
Sbjct: 252 LPDLPPS---LEALNVRDNYLT-DLPELPQSLTFLDVSENIFSGLSELPP-------NLY 300

Query: 694 SLHLNNNKLTGNLPSSFQNLTSLETLDLGNNRFSGNIPSLLGNGFVGLRILSLRSNAFSG 753
            L+ ++N++     S      SLE L++ NN+    +P+L       L  L    N  + 
Sbjct: 301 YLNASSNEIR----SLCDLPPSLEELNVSNNKLI-ELPALPPR----LERLIASFNHLA- 350

Query: 754 EIPSKLSNLSSLQVLDLAENNLTGSIPGSVGDLKAMAHVQNIVKYLLFGRYRGIYYEENL 813
           E+P    N   L+ L +  N L    P     ++                          
Sbjct: 351 EVPELPQN---LKQLHVEYNPLR-EFPDIPESVE-------------------------- 380

Query: 814 VINTKGSSKDTPRLFHFIDLSGNNLHGDFPTQLTKLVGLVVLNLSRNHIGGQIPENISGL 873
                             DL  N+   + P        L  L++  N +  + P+     
Sbjct: 381 ------------------DLRMNSHLAEVPELPQN---LKQLHVETNPL-REFPDIP--- 415

Query: 874 HQLASLDLSSNNLSGGIPSSLSSLSFLGYINLSRNQLS 911
             +  L ++S  +      +  +   L       +   
Sbjct: 416 ESVEDLRMNSERVVDPYEFAHETTDKLEDDVFEHHHHH 453

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score =  145 bits (369), Expect = 2e-37
 Identities = 103/515 (20%), Positives = 177/515 (34%), Gaps = 76/515 (14%)

Query: 220 VNLTSPAVLDLSLNHFNSLFPNWLVNISTLVYVDLSDCDLYGRIPIGFGELPNLQYLSLA 279
           V+ T         ++   + P    N+ +      +  +     P G GE   +    L 
Sbjct: 8   VSNTFLQEPLRHSSNLTEM-PVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLR 66

Query: 280 GNN-------NLSGSCSQLFRGSWKKIQILNFASNKLHGKLPSSVANMTSLTNFDLFDKK 332
                      L+             ++ L  + N L  +LP    ++ SL   +   K 
Sbjct: 67  DCLDRQAHELELNNLGLSSLPELPPHLESLVASCNSLT-ELPELPQSLKSLLVDNNNLKA 125

Query: 333 VEGGIPSSIARLCYLKEFDLSGNNLTGSLPEILQGTDLCVSSNSPLPSLISMRLGNNHLK 392
           +    P        L+   +S N L   LPE+                L  + + NN LK
Sbjct: 126 LSDLPPL-------LEYLGVSNNQLE-KLPEL-----------QNSSFLKIIDVDNNSLK 166

Query: 393 GKLPEWLSQLENLVELTLSYNLLQGPIPASLGNLKNLTKLNLPGNQLNGTLPETLGSLPE 452
            KLP+    LE    +    N L+  +P  L NL  LT +    N L   LP+   SL  
Sbjct: 167 -KLPDLPPSLE---FIAAGNNQLEE-LP-ELQNLPFLTAIYADNNSLK-KLPDLPLSL-- 217

Query: 453 LSVLDVSSNSLTGIISEIHFSRLSKLKFLGLSSNSFILNVSSSWIPPFQVQSLNMRSCQL 512
              +   +N L  +        L  L  +   +N   L       P   +++LN+R   L
Sbjct: 218 -ESIVAGNNILEELPE---LQNLPFLTTIYADNNL--LKTLPDLPP--SLEALNVRDNYL 269

Query: 513 GPSFPSWLKTQQGVSFLDFSNASISGPIPNWFWDISSKLSLLNVSLNQLQGQLPNPLNIA 572
               P      Q ++FLD S    SG +     ++   L  LN S N+++     P ++ 
Sbjct: 270 T-DLPELP---QSLTFLDVSENIFSG-LS----ELPPNLYYLNASSNEIRSLCDLPPSLE 320

Query: 573 PFADVDFRSNLLEGPIPLPIVEIELLDLSNNHFSGPIPQNISGSMPNLIFLSVSGNRLTG 632
              +++  +N L   +P     +E L  S NH +      +     NL  L V  N L  
Sbjct: 321 ---ELNVSNNKLIE-LPALPPRLERLIASFNHLA-----EVPELPQNLKQLHVEYNPLR- 370

Query: 633 KIPGSIGEMQLLQVIDLSRNSISGSISSSIGNCTFLKVLDLSYSSLSGVIPASLGQLTRL 692
           + P     ++ L++     NS    +     N   LK L +  + L    P     +   
Sbjct: 371 EFPDIPESVEDLRM-----NSHLAEVPELPQN---LKQLHVETNPLR-EFPDIPESV--- 418

Query: 693 QSLHLNNNKLTGNLPSSFQNLTSLETLDLGNNRFS 727
           + L +N+ ++      + +    LE     ++   
Sbjct: 419 EDLRMNSERVVDPYEFAHETTDKLEDDVFEHHHHH 453

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score =  141 bits (357), Expect = 7e-36
 Identities = 95/512 (18%), Positives = 167/512 (32%), Gaps = 97/512 (18%)

Query: 295 SWKKIQILNFASNKLHGKLPSSVANMTSLTNFDLFDKKVEGGIPSSIARLCY-------- 346
           S   +Q     S+ L  ++P    N+ S T +     + E   P                
Sbjct: 9   SNTFLQEPLRHSSNLT-EMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRD 67

Query: 347 -----LKEFDLSGNNLTGSLPEILQGTDLCVSSNSPLPSLISMRLGNNHLKGKLPEWLSQ 401
                  E +L+   L+ SLPE+              P L S+    N L  +LPE    
Sbjct: 68  CLDRQAHELELNNLGLS-SLPEL-------------PPHLESLVASCNSLT-ELPELPQS 112

Query: 402 LENLVELTLSYNLLQGPIPA---------------SLGNLKNLTKLNLPGNQLNGTLPET 446
           L++L+    +   L    P                 L N   L  +++  N L   LP+ 
Sbjct: 113 LKSLLVDNNNLKALSDLPPLLEYLGVSNNQLEKLPELQNSSFLKIIDVDNNSLK-KLPDL 171

Query: 447 LGSLPELSVLDVSSNSLTGIISEIHFSRLSKLKFLGLSSNSFILNVSSSWIP--PFQVQS 504
             S   L  +   +N L  +        L  L  +   +NS         +P  P  ++S
Sbjct: 172 PPS---LEFIAAGNNQLEELPE---LQNLPFLTAIYADNNSL------KKLPDLPLSLES 219

Query: 505 LNMRSCQLGPSFPSWLKTQQGVSFLDFSNASISGPIPNWFWDISSKLSLLNVSLNQLQGQ 564
           +   +  L       L+    ++ +   N  +   +P+        L  LNV  N L   
Sbjct: 220 IVAGNNIL--EELPELQNLPFLTTIYADNNLLKT-LPDLP----PSLEALNVRDNYLTDL 272

Query: 565 LPNPLNIAPFADVDFRSNLLEGPIPLPIVEIELLDLSNNHFSGPIPQNISGSMPNLIFLS 624
              P ++     +D   N+  G +      +  L+ S+N        ++    P+L  L+
Sbjct: 273 PELPQSL---TFLDVSENIFSG-LSELPPNLYYLNASSNEIR-----SLCDLPPSLEELN 323

Query: 625 VSGNRLTGKIPGSIGEMQLLQVIDLSRNSISGSISSSIGNCTFLKVLDLSYSSLSGVIPA 684
           VS N+L  ++P        L+ +  S N ++  +     N   LK L + Y+ L    P 
Sbjct: 324 VSNNKLI-ELPALPPR---LERLIASFNHLA-EVPELPQN---LKQLHVEYNPLR-EFPD 374

Query: 685 SLGQLTRLQSLHLNNNKLTGNLPSSFQNLTSLETLDLGNNRFSGNIPSLLGNGFVGLRIL 744
               +  L+     N+ L   +P   QNL     L +  N      P +  +    +  L
Sbjct: 375 IPESVEDLRM----NSHLA-EVPELPQNLK---QLHVETNPLR-EFPDIPES----VEDL 421

Query: 745 SLRSNAFSGEIPSKLSNLSSLQVLDLAENNLT 776
            + S                L+      ++  
Sbjct: 422 RMNSERVVDPYEFAHETTDKLEDDVFEHHHHH 453

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score =  133 bits (337), Expect = 3e-33
 Identities = 93/540 (17%), Positives = 174/540 (32%), Gaps = 126/540 (23%)

Query: 401 QLENLVELTLSYNLLQGPIPASLGNLKNLTKLNLPGNQLNGTLPETLGSLPELSVLDVSS 460
               L E     + L   +P    N+K+ T+     ++     P   G   E++V  +  
Sbjct: 9   SNTFLQEPLRHSSNLT-EMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRD 67

Query: 461 NSLTGIISEIHFSRLSKLKFLGLSSNSFILNVSSSWIPP--FQVQSLNMRSCQLGPSFPS 518
                           +   L L++         S +P     ++SL      L    P 
Sbjct: 68  CLDR------------QAHELELNNLGL------SSLPELPPHLESLVASCNSLT-ELPE 108

Query: 519 WLKTQQGVSFLDFSNASISGPIPNWFWDISSKLSLLNVSLNQLQGQLPNPLNIAPFADVD 578
             ++ + +   + +  ++S   P         L  L VS NQL+ +LP   N +    +D
Sbjct: 109 LPQSLKSLLVDNNNLKALSDLPPL--------LEYLGVSNNQLE-KLPELQNSSFLKIID 159

Query: 579 FRSNLLEGPIPLPIVEIELLDLSNNHFSGPIPQNISGSMPNLIFLSVSGNRLTGKIPGSI 638
             +N L+  +P     +E +   NN     +P+    ++P L  +    N L  K+P   
Sbjct: 160 VDNNSLKK-LPDLPPSLEFIAAGNNQLEE-LPEL--QNLPFLTAIYADNNSLK-KLPDLP 214

Query: 639 GEMQLLQVIDLSRNSISGSISSSIGNCTFLKVLDLSYSSLSGVIPASLGQLTRLQSLHLN 698
                L+ I    N +       + N  FL  +    + L   +P     L   ++L++ 
Sbjct: 215 LS---LESIVAGNNILE--ELPELQNLPFLTTIYADNNLLK-TLPDLPPSL---EALNVR 265

Query: 699 NNKLTGNLPSSFQNLTSLETLDLGNNRFSGNIPSLLGNGFVGLRILSLRSNAFSGEIPSK 758
           +N LT +LP   Q+LT L+  +   +     +  L  N    L  L+  SN     +   
Sbjct: 266 DNYLT-DLPELPQSLTFLDVSENIFS----GLSELPPN----LYYLNASSNEIR-SLCDL 315

Query: 759 LSNLSSLQVLDLAENNLTGSIPGSVGDLKAMAHVQNIVKYLLFGRYRGIYYEENLVINTK 818
             +L   + L+++ N L   +P     L+                               
Sbjct: 316 PPSL---EELNVSNNKLI-ELPALPPRLE------------------------------- 340

Query: 819 GSSKDTPRLFHFIDLSGNNLHGDFPTQLTKLVGLVVLNLSRNHIGGQIPENISGLHQLA- 877
                       +  S N+L  + P     L     L++  N +  + P+    +  L  
Sbjct: 341 -----------RLIASFNHLA-EVPELPQNLK---QLHVEYNPLR-EFPDIPESVEDLRM 384

Query: 878 ---------------SLDLSSNNLSGGIPSSLSSLSFLGYINLSRNQLSGKIPFEGHMTT 922
                           L + +N L    P    S+  L    ++  ++     F    T 
Sbjct: 385 NSHLAEVPELPQNLKQLHVETNPLR-EFPDIPESVEDL---RMNSERVVDPYEFAHETTD 440

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score =  110 bits (276), Expect = 2e-25
 Identities = 93/567 (16%), Positives = 174/567 (30%), Gaps = 121/567 (21%)

Query: 91  SDSSGSLLEYLDLSFNTFNDIPIPEFLGSLENLQYLNLSEAGFTGVVPSSLGNLHRLQYF 150
            + S + L+      +   ++P      ++++      + + +    P   G    +   
Sbjct: 6   RNVSNTFLQEPLRHSSNLTEMP--VEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVS 63

Query: 151 DVSAELFALSADSLDWLTGLVSLKHLAMNRVDLSLVGSEWLGILKNLPNLTELHLSVCGL 210
            +   L                   L +N + LS        + +  P+L  L  S   L
Sbjct: 64  RLRDCL-------------DRQAHELELNNLGLS-------SLPELPPHLESLVASCNSL 103

Query: 211 TGSITSITPVNLTSPAVLDLSLNHFNSLFPNWLVNISTLVYVDLSDCDLYGRIPIGFGEL 270
           T  +    P +L S  V + +L   + L P        L Y+ +S+  L  ++P      
Sbjct: 104 T-ELPE-LPQSLKSLLVDNNNLKALSDLPPL-------LEYLGVSNNQL-EKLP-ELQNS 152

Query: 271 PNLQYLSLAGNNNLSGSCSQLFRGSWKKIQILNFASNKLHGKLPSSVANMTSLTNFDLFD 330
             L+ + +  NN+L              ++ +   +N+L  +LP  + N+  LT     +
Sbjct: 153 SFLKIIDV-DNNSLKKLPDLP-----PSLEFIAAGNNQLE-ELP-ELQNLPFLTAIYADN 204

Query: 331 KKVEGGIPSSIARLCYLKEFDLSGNNLTGSLPEILQGTDLCVSSNSPLPSLISMRLGNNH 390
                 +         L+      N L   LPE+             LP L ++   NN 
Sbjct: 205 NS----LKKLPDLPLSLESIVAGNNILE-ELPELQN-----------LPFLTTIYADNNL 248

Query: 391 LKGKLPEWLSQLENLVELTLSYNLLQGPIPASLGNLKNLTKLNLPGNQLNGTLPETLGSL 450
           LK  LP+    LE    L +  N L   +P    +L  L       + L+          
Sbjct: 249 LK-TLPDLPPSLE---ALNVRDNYLTD-LPELPQSLTFLDVSENIFSGLS-------ELP 296

Query: 451 PELSVLDVSSNSLTGIISEIHFSRLSKLKFLGLSSNSFILNVSSSWIPPF--QVQSLNMR 508
           P L  L+ SSN +  +           L+ L +S+N          +P    +++ L   
Sbjct: 297 PNLYYLNASSNEIRSLCDL-----PPSLEELNVSNNKL------IELPALPPRLERLIAS 345

Query: 509 SCQLGPSFPSWLKTQQGVSFLDFSNASISGPIPNWFWDISSKLSLLNVSLNQLQGQLPNP 568
              L    P                                 L  L+V  N L+ + P+ 
Sbjct: 346 FNHLA-EVPELP----------------------------QNLKQLHVEYNPLR-EFPD- 374

Query: 569 LNIAPFADVDFRSNLLEGPIPLPIVEIELLDLSNNHFSGPIPQNISGSMPNLIFLSVSGN 628
               P +  D R N     +P     ++ L +  N               ++  L ++  
Sbjct: 375 ---IPESVEDLRMNSHLAEVPELPQNLKQLHVETNPLR-----EFPDIPESVEDLRMNSE 426

Query: 629 RLTGKIPGSIGEMQLLQVIDLSRNSIS 655
           R+      +      L+      +   
Sbjct: 427 RVVDPYEFAHETTDKLEDDVFEHHHHH 453

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 98.1 bits (245), Expect = 1e-21
 Identities = 60/317 (18%), Positives = 104/317 (32%), Gaps = 66/317 (20%)

Query: 610 PQNISGSMPNLIFLSVSGNRLTGKIPGSIGEMQLLQVIDLSRNSISGSISSSIGN----- 664
           P+N+S +           + LT ++P     ++       + +    +     G      
Sbjct: 5   PRNVSNTFLQEPLRH--SSNLT-EMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMA 61

Query: 665 --------CTFLKVLDLSYSSLSGVIPASLGQLTRLQSLHLNNNKLTGNLPSSFQNLTSL 716
                         L+L+   LS  +P     L   +SL  + N LT  LP   Q+L SL
Sbjct: 62  VSRLRDCLDRQAHELELNNLGLS-SLPELPPHL---ESLVASCNSLT-ELPELPQSLKSL 116

Query: 717 ETLDLGNNRFSGNIPSLLGNGFVGLRILSLRSNAFSGEIPSKLSNLSSLQVLDLAENNLT 776
              +      S   P L          L + +N    ++P  L N S L+++D+  N+L 
Sbjct: 117 LVDNNNLKALSDLPPLL--------EYLGVSNNQLE-KLPE-LQNSSFLKIIDVDNNSLK 166

Query: 777 GSIPGSVGDLKAMAHVQNIVKYLLFGRYRGIYYEENLVINTKGSSKDTPRLFH--FIDLS 834
             +P     L+ +A   N ++ L                       +   L     I   
Sbjct: 167 -KLPDLPPSLEFIAAGNNQLEEL----------------------PELQNLPFLTAIYAD 203

Query: 835 GNNLHGDFPTQLTKLVGLVVLNLSRNHIGGQIPENISGLHQLASLDLSSNNLSGGIPSSL 894
            N+L    P     L     +    N +  +    +  L  L ++   +N L   +P   
Sbjct: 204 NNSLK-KLPDLPLSLE---SIVAGNNIL--EELPELQNLPFLTTIYADNNLLK-TLPDLP 256

Query: 895 SSLSFLGYINLSRNQLS 911
            SL  L   N+  N L+
Sbjct: 257 PSLEAL---NVRDNYLT 270

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 82.0 bits (203), Expect = 2e-16
 Identities = 48/278 (17%), Positives = 86/278 (30%), Gaps = 52/278 (18%)

Query: 634 IPGSIGEMQLLQVIDLSRNSISGSISSSIGNCTFLKVLDLSYSSLSGVIPASLGQLTRLQ 693
           I         LQ      ++++  +     N         ++S      P   G+   + 
Sbjct: 3   INPRNVSNTFLQEPLRHSSNLT-EMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMA 61

Query: 694 SLHLNNNKLTGNLPSSFQNLTSLETLDLGNNRFSGNIPSLLGNGFVGLRILSLRSNAFSG 753
              L +                   L+L N   S ++P L  +    L  L    N+ + 
Sbjct: 62  VSRLRDCLDR-----------QAHELELNNLGLS-SLPELPPH----LESLVASCNSLT- 104

Query: 754 EIPSKLSNLSSLQVLDLAENNLTGSIPGSVGDLKAMAHVQNIVKYLLFGRYRGIYYEENL 813
           E+P    +L SL V +     L+   P     L+ +    N ++ L       +     L
Sbjct: 105 ELPELPQSLKSLLVDNNNLKALSDLPPL----LEYLGVSNNQLEKL-----PELQNSSFL 155

Query: 814 VINTKGSSKDTPRLFHFIDLSGNNLHGDFPTQLTKLVGLVVLNLSRNHIGGQIPENISGL 873
            I               ID+  N+L    P     L     +    N +  ++PE +  L
Sbjct: 156 KI---------------IDVDNNSLK-KLPDLPPSLE---FIAAGNNQLE-ELPE-LQNL 194

Query: 874 HQLASLDLSSNNLSGGIPSSLSSLSFLGYINLSRNQLS 911
             L ++   +N+L   +P    SL  +       N L 
Sbjct: 195 PFLTAIYADNNSLK-KLPDLPLSLESI---VAGNNILE 228

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 70.8 bits (174), Expect = 9e-13
 Identities = 43/264 (16%), Positives = 81/264 (30%), Gaps = 71/264 (26%)

Query: 658 ISSSIGNCTFLKVLDLSYSSLSGVIPASLGQLTRLQSLHLNNNKLTGNLPSSFQNLTSLE 717
           I+    + TFL+      S+L+  +P     +      +   ++   N P        + 
Sbjct: 3   INPRNVSNTFLQEPLRHSSNLT-EMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMA 61

Query: 718 TLDLGNNRFSGNIPSLLGNGFVGLRILSLRSNAFSGEIPSKLSNLSSLQVLDLAENNLTG 777
              L +                    L L +   S  +P    +L   + L  + N+LT 
Sbjct: 62  VSRLRDCLDRQ------------AHELELNNLGLS-SLPELPPHL---ESLVASCNSLT- 104

Query: 778 SIPGSVGDLKAMAHVQNIVKYLLFGRYRGIYYEENLVINTKGSSKDTPRLFHFIDLSGNN 837
            +P     LK++                                          + +   
Sbjct: 105 ELPELPQSLKSL---------------------------------------LVDNNNLKA 125

Query: 838 LHGDFPTQLTKLVGLVVLNLSRNHIGGQIPENISGLHQLASLDLSSNNLSGGIPSSLSSL 897
           L  D P  L  L       +S N +  ++PE +     L  +D+ +N+L   +P    SL
Sbjct: 126 LS-DLPPLLEYL------GVSNNQLE-KLPE-LQNSSFLKIIDVDNNSLK-KLPDLPPSL 175

Query: 898 SFLGYINLSRNQLSGKIPFEGHMT 921
            F+       NQL  ++P   ++ 
Sbjct: 176 EFI---AAGNNQLE-ELPELQNLP 195

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score =  139 bits (353), Expect = 2e-36
 Identities = 54/326 (16%), Positives = 104/326 (31%), Gaps = 55/326 (16%)

Query: 596 ELLDLSNNHFSGPIPQNISGSMPNLIFLSVSGNRLTGKIPGSIGEMQL--LQVIDLSRNS 653
           +     N   +         +  N    + +G  L       + +        ++L    
Sbjct: 34  QWQRHYNADRNRWHSAWRQANSNNPQIETRTGRALK-ATADLLEDATQPGRVALELRSVP 92

Query: 654 ISGSISSSIGNCTFLKVLDLSYSSLSGVIPASLGQLTRLQSLHLNNNKLTGNLPSSFQNL 713
           +           + L+ + +  + L   +P ++ Q   L++L L  N L   LP+S  +L
Sbjct: 93  LP-QFPDQAFRLSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLR-ALPASIASL 149

Query: 714 TSLETLDLGNNRFSGNIPSLLGN--------GFVGLRILSLRSNAFSGEIPSKLSNLSSL 765
             L  L +        +P  L +        G V L+ L L        +P+ ++NL +L
Sbjct: 150 NRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIR-SLPASIANLQNL 208

Query: 766 QVLDLAENNLTGSIPGSVGDLKAMAHVQNIVKYLLFGRYRGIYYEENLVINTKGSSKDTP 825
           + L +  + L+ ++  ++  L                          L            
Sbjct: 209 KSLKIRNSPLS-ALGPAIHHLP------------------------KLEE---------- 233

Query: 826 RLFHFIDLSGNNLHGDFPTQLTKLVGLVVLNLSRNHIGGQIPENISGLHQLASLDLSSNN 885
                +DL G     ++P        L  L L        +P +I  L QL  LDL    
Sbjct: 234 -----LDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCV 288

Query: 886 LSGGIPSSLSSLSFLGYINLSRNQLS 911
               +PS ++ L     I +  +  +
Sbjct: 289 NLSRLPSLIAQLPANCIILVPPHLQA 314

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score =  134 bits (339), Expect = 1e-34
 Identities = 55/346 (15%), Positives = 100/346 (28%), Gaps = 33/346 (9%)

Query: 114 PEFLGSLENLQYLNLSEAGFTGVVPSSLGNLHRLQYFDVSAELFALSADSLDWLTGLVSL 173
                     + L    +         L    R    D +         S        + 
Sbjct: 5   HHHHHHSSGRENLYFQGSTALRPYHDVLSQWQRHYNADRNRW------HSAWRQANSNNP 58

Query: 174 KHLAMNRVDLSLVGSEWLGILKNLPNLTELHLSVCGLTGSITSITPVNLTSPAVLDLSLN 233
           +        L       L      P    L L    L           L+    + +   
Sbjct: 59  QIETRTGRALKATADL-LEDAT-QPGRVALELRSVPLPQFPDQAF--RLSHLQHMTIDAA 114

Query: 234 HFNSLFPNWLVNISTLVYVDLSDCDLYGRIPIGFGELPNLQYLSLAGNNNLS------GS 287
               L P+ +   + L  + L+   L   +P     L  L+ LS+     L+       S
Sbjct: 115 GLMEL-PDTMQQFAGLETLTLARNPL-RALPASIASLNRLRELSIRACPELTELPEPLAS 172

Query: 288 CSQLFR-GSWKKIQILNFASNKLHGKLPSSVANMTSLTNFDLFDKKVEGGIPSSIARLCY 346
                       +Q L      +   LP+S+AN+ +L +  + +  +   +  +I  L  
Sbjct: 173 TDASGEHQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLSA-LGPAIHHLPK 230

Query: 347 LKEFDLSGNNLTGSLPEILQGTDLCVSSNSPLPSLISMRL-GNNHLKGKLPEWLSQLENL 405
           L+E DL G     + P I  G             L  + L   ++L   LP  + +L  L
Sbjct: 231 LEELDLRGCTALRNYPPIFGG----------RAPLKRLILKDCSNLL-TLPLDIHRLTQL 279

Query: 406 VELTLSYNLLQGPIPASLGNLKNLTKLNLPGNQLNGTLPETLGSLP 451
            +L L   +    +P+ +  L     + +P +           + P
Sbjct: 280 EKLDLRGCVNLSRLPSLIAQLPANCIILVPPHLQAQLDQHRPVARP 325

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score =  132 bits (335), Expect = 5e-34
 Identities = 46/312 (14%), Positives = 100/312 (32%), Gaps = 56/312 (17%)

Query: 596 ELLDLSNNHFSGPIPQNIS-GSMPNLIFLSVSGNRLTGKIPGSIGEMQLLQVIDLSRNSI 654
           ++   +           +   + P  + L +    L  + P     +  LQ + +    +
Sbjct: 59  QIETRTGRALKA-TADLLEDATQPGRVALELRSVPLP-QFPDQAFRLSHLQHMTIDAAGL 116

Query: 655 SGSISSSIGNCTFLKVLDLSYSSLSGVIPASLGQLTRLQSLHL-NNNKLT--------GN 705
              +  ++     L+ L L+ + L   +PAS+  L RL+ L +    +LT         +
Sbjct: 117 M-ELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLRELSIRACPELTELPEPLASTD 174

Query: 706 LPSSFQNLTSLETLDLGNNRFSGNIPSLLGNGFVGLRILSLRSNAFSGEIPSKLSNLSSL 765
                Q L +L++L L       ++P+ + N    L+ L +R++  S  +   + +L  L
Sbjct: 175 ASGEHQGLVNLQSLRLEWTGIR-SLPASIAN-LQNLKSLKIRNSPLS-ALGPAIHHLPKL 231

Query: 766 QVLDLAENNLTGSIPGSVGDLKAMAHVQNIVKYLLFGRYRGIYYEENLVINTKGSSKDTP 825
           + LDL       + P   G    +                                    
Sbjct: 232 EELDLRGCTALRNYPPIFGGRAPLKR---------------------------------- 257

Query: 826 RLFHFIDLSGNNLHGDFPTQLTKLVGLVVLNLSRNHIGGQIPENISGLHQLASLDLSSNN 885
                + L   +     P  + +L  L  L+L       ++P  I+ L     + +  + 
Sbjct: 258 -----LILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPHL 312

Query: 886 LSGGIPSSLSSL 897
            +        + 
Sbjct: 313 QAQLDQHRPVAR 324

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score =  131 bits (333), Expect = 8e-34
 Identities = 50/294 (17%), Positives = 104/294 (35%), Gaps = 40/294 (13%)

Query: 503 QSLNMRSCQLGPSFPSWLKTQQGVSFLDFSNASISGPIPNWFWDISSKLSLLNVSLNQLQ 562
           ++L  +       +   L   Q     D +    +    N     S+   +   +   L+
Sbjct: 15  ENLYFQGSTALRPYHDVLSQWQRHYNADRNRWHSAWRQAN-----SNNPQIETRTGRALK 69

Query: 563 GQLPNPLNIAPFADVDFRSNLLEGPIPLPIVEIELLDLSNNHFSGPIPQNISGSMPNLIF 622
               + L  A       +   +             L+L +       P      + +L  
Sbjct: 70  -ATADLLEDAT------QPGRVA------------LELRSVPLPQ-FPDQA-FRLSHLQH 108

Query: 623 LSVSGNRLTGKIPGSIGEMQLLQVIDLSRNSISGSISSSIGNCTFLKVLDLSYSSLSGVI 682
           +++    L  ++P ++ +   L+ + L+RN +  ++ +SI +   L+ L +        +
Sbjct: 109 MTIDAAGLM-ELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLRELSIRACPELTEL 166

Query: 683 PASLGQ---------LTRLQSLHLNNNKLTGNLPSSFQNLTSLETLDLGNNRFSGNIPSL 733
           P  L           L  LQSL L    +  +LP+S  NL +L++L + N+  S  +   
Sbjct: 167 PEPLASTDASGEHQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLSA-LGPA 224

Query: 734 LGNGFVGLRILSLRSNAFSGEIPSKLSNLSSLQVLDLAENNLTGSIPGSVGDLK 787
           + +    L  L LR        P      + L+ L L + +   ++P  +  L 
Sbjct: 225 IHH-LPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLT 277

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score =  130 bits (329), Expect = 3e-33
 Identities = 51/390 (13%), Positives = 105/390 (26%), Gaps = 84/390 (21%)

Query: 347 LKEFDLSGNNLTGSLPEILQGTDLCVSSNSPLPSLISMRLGNNHLKGKLPEWLSQLENLV 406
            +     G+       ++L                 +      H   +         N  
Sbjct: 14  RENLYFQGSTALRPYHDVLSQ----------WQRHYNADRNRWHSAWRQAN----SNNPQ 59

Query: 407 ELTLSYNLLQGPIPASLGNLK--NLTKLNLPGNQLNGTLPETLGSLPELSVLDVSSNSLT 464
             T +   L+      L +        L L    L    P+    L  L  + + +  L 
Sbjct: 60  IETRTGRALKA-TADLLEDATQPGRVALELRSVPLP-QFPDQAFRLSHLQHMTIDAAGLM 117

Query: 465 GIISEIHFSRLSKLKFLGLSSNSFILNVSSSWIPPFQVQSLNMRSCQLGPSFPSWLKTQQ 524
            +   +   + + L                        ++L +    L  + P+ + +  
Sbjct: 118 ELPDTM--QQFAGL------------------------ETLTLARNPL-RALPASIASLN 150

Query: 525 GVSFLDFSNASISGPIPNWFWDISSKLSLLNVSLNQLQGQLPNPLNIAPFADVDFRSNLL 584
            +  L          +P           L +   +     L N                 
Sbjct: 151 RLRELSIRACPELTELPE---------PLASTDASGEHQGLVN----------------- 184

Query: 585 EGPIPLPIVEIELLDLSNNHFSGPIPQNISGSMPNLIFLSVSGNRLTGKIPGSIGEMQLL 644
                     ++ L L        +P +I  ++ NL  L +  + L+  +  +I  +  L
Sbjct: 185 ----------LQSLRLEWTGIRS-LPASI-ANLQNLKSLKIRNSPLS-ALGPAIHHLPKL 231

Query: 645 QVIDLSRNSISGSISSSIGNCTFLKVLDLSYSSLSGVIPASLGQLTRLQSLHLNNNKLTG 704
           + +DL   +   +     G    LK L L   S    +P  + +LT+L+ L L       
Sbjct: 232 EELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLS 291

Query: 705 NLPSSFQNLTSLETLDLGNNRFSGNIPSLL 734
            LPS    L +   + +  +  +       
Sbjct: 292 RLPSLIAQLPANCIILVPPHLQAQLDQHRP 321

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score =  123 bits (310), Expect = 8e-31
 Identities = 47/296 (15%), Positives = 88/296 (29%), Gaps = 44/296 (14%)

Query: 619 NLIFLSVSGNRLTGKIPGSIGEMQLLQVIDLSRNSISGSISSSIGNCTFLKVLDLSYSSL 678
               L   G+         + + Q     D +R   +        N    ++   +  +L
Sbjct: 13  GRENLYFQGSTALRPYHDVLSQWQRHYNADRNRWHSA----WRQANSNNPQIETRTGRAL 68

Query: 679 SGVIPASLGQLTR--LQSLHLNNNKLTGNLPSSFQNLTSLETLDLGNNRFSGNIPSLLGN 736
                  L   T+    +L L +  L    P     L+ L+ + +        +P  +  
Sbjct: 69  K-ATADLLEDATQPGRVALELRSVPLP-QFPDQAFRLSHLQHMTIDAAGLM-ELPDTMQQ 125

Query: 737 GFVGLRILSLRSNAFSGEIPSKLSNLSSLQVLDLAENNLTGSIPGSVGDLKAMAHVQNIV 796
            F GL  L+L  N     +P+ +++L+ L+ L +        +P  +    A    Q +V
Sbjct: 126 -FAGLETLTLARNPLR-ALPASIASLNRLRELSIRACPELTELPEPLASTDASGEHQGLV 183

Query: 797 KYLLFGRYRGIYYEENLVINTKGSSKDTPRLFHFIDLSGNNLHGDFPTQLTKLVGLVVLN 856
                          NL                 + L    +    P  +  L  L  L 
Sbjct: 184 ---------------NLQS---------------LRLEWTGIR-SLPASIANLQNLKSLK 212

Query: 857 LSRNHIGGQIPENISGLHQLASLDLSSNNLSGGIPSSLSSLSFLGYINLS-RNQLS 911
           +  + +   +   I  L +L  LDL         P      + L  + L   + L 
Sbjct: 213 IRNSPL-SALGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLL 267

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score =  119 bits (301), Expect = 1e-29
 Identities = 54/382 (14%), Positives = 108/382 (28%), Gaps = 65/382 (17%)

Query: 393 GKLPEWLSQLENLVELTLSYNLLQGPIPASLGNLKNLTKLNLPGNQLNGTLPETLGSLPE 452
           G              L    +    P    L   +     +               +   
Sbjct: 2   GSSHHHHHHSSGRENLYFQGSTALRPYHDVLSQWQRHYNADRNRWHS----AWRQANSNN 57

Query: 453 LSVLDVSSNSLTGIISEIHFSRLSKLKFLGLSSNSFILNVSSSWIPPFQVQSLNMRSCQL 512
             +   +  +L      +  +       L L S                           
Sbjct: 58  PQIETRTGRALKATADLLEDATQPGRVALELRSVPLP----------------------- 94

Query: 513 GPSFPSWLKTQQGVSFLDFSNASISGPIPNWFWDISSKLSLLNVSLNQLQGQLPNPLNIA 572
              FP        +  +    A +   +P+     +  L  L ++ N L+  LP  +   
Sbjct: 95  --QFPDQAFRLSHLQHMTIDAAGLME-LPDTMQQFAG-LETLTLARNPLR-ALPASI--- 146

Query: 573 PFADVDFRSNLLEGPIPLPIVEIELLDLSNNHFSGPIPQNIS--------GSMPNLIFLS 624
                   ++L           +  L +        +P+ ++          + NL  L 
Sbjct: 147 --------ASL---------NRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLR 189

Query: 625 VSGNRLTGKIPGSIGEMQLLQVIDLSRNSISGSISSSIGNCTFLKVLDLSYSSLSGVIPA 684
           +    +   +P SI  +Q L+ + +  + +S ++  +I +   L+ LDL   +     P 
Sbjct: 190 LEWTGIR-SLPASIANLQNLKSLKIRNSPLS-ALGPAIHHLPKLEELDLRGCTALRNYPP 247

Query: 685 SLGQLTRLQSLHL-NNNKLTGNLPSSFQNLTSLETLDLGNNRFSGNIPSLLGNGFVGLRI 743
             G    L+ L L + + L   LP     LT LE LDL        +PSL+        I
Sbjct: 248 IFGGRAPLKRLILKDCSNLL-TLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQ-LPANCI 305

Query: 744 LSLRSNAFSGEIPSKLSNLSSL 765
           + +  +  +     +     + 
Sbjct: 306 ILVPPHLQAQLDQHRPVARPAE 327

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 74.6 bits (184), Expect = 2e-14
 Identities = 29/238 (12%), Positives = 59/238 (24%), Gaps = 59/238 (24%)

Query: 685 SLGQLTRLQSLHLNNNKLTGNLPSSFQNLTSLETLDLGNNRFSGNIPSLLGNGFVGLRIL 744
                +  ++L+   +                   D      +    +         +I 
Sbjct: 7   HHHHSSGRENLYFQGSTALRPYHDVLSQWQRHYNADRNRWHSAWRQANS-----NNPQIE 61

Query: 745 SLRSNAFSGEIPSKLSNLSS--LQVLDLAENNLTGSIPGSVGDLKAMAHVQNIVKYLLFG 802
           +    A        L + +      L+L    L    P     L                
Sbjct: 62  TRTGRALK-ATADLLEDATQPGRVALELRSVPLP-QFPDQAFRLS--------------- 104

Query: 803 RYRGIYYEENLVINTKGSSKDTPRLFHFIDLSGNNLHGDFPTQLTKLVGLVVLNLSRNHI 862
                    +L                 + +    L  + P  + +  GL  L L+RN +
Sbjct: 105 ---------HLQ---------------HMTIDAAGLM-ELPDTMQQFAGLETLTLARNPL 139

Query: 863 GGQIPENISGLHQLASLDLSSNNLSGGIPSSLSSLSFLGYI---------NLSRNQLS 911
              +P +I+ L++L  L + +      +P  L+S    G            L    + 
Sbjct: 140 R-ALPASIASLNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIR 196

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 73.8 bits (182), Expect = 3e-14
 Identities = 47/231 (20%), Positives = 78/231 (33%), Gaps = 51/231 (22%)

Query: 98  LEYLDLSFNTFNDIPIPEFLGSLENLQYLNLSEAGFTGVVPSSLGNLHRLQYFDVSAELF 157
           LE L L+ N    +P    + SL  L+ L++        +P  L +              
Sbjct: 129 LETLTLARNPLRALP--ASIASLNRLRELSIRACPELTELPEPLAST------------- 173

Query: 158 ALSADSLDWLTGLVSLKHLAMNRVDLSLVGSEWLGILKNLPNLTELHLSVCGLTGSITSI 217
               D+     GLV+L+ L +    +  + +     + NL NL  L +    L+    +I
Sbjct: 174 ----DASGEHQGLVNLQSLRLEWTGIRSLPAS----IANLQNLKSLKIRNSPLSALGPAI 225

Query: 218 TPVNLTSPAVLDLSLNHFNSLFPNWLVNISTLVYVDLSDCDLYGRIPIGFGELPNLQYLS 277
              +L     LDL        +P      + L  + L DC     +P+    L  L+ L 
Sbjct: 226 H--HLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLD 283

Query: 278 LAGNNNLSGSCSQLFRGSWKKIQILNFASNKLHGKLPSSVANMTSLTNFDL 328
           L G  NLS                          +LPS +A + +     +
Sbjct: 284 LRGCVNLS--------------------------RLPSLIAQLPANCIILV 308

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score =  143 bits (361), Expect = 3e-36
 Identities = 70/502 (13%), Positives = 162/502 (32%), Gaps = 41/502 (8%)

Query: 395 LPEWLSQLENLVELTLSYNLLQGPIPASLGNLKNLTKLNLPGNQLNGTLPETLGSLPELS 454
           + E            ++ + L+  + +   +  N+ +L+L GN L+      L    +L 
Sbjct: 2   IHEIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLE 61

Query: 455 VLDVSSNSLTGIISEIHFSRLSKLKFLGLSSNSFILNVSSSWIPPFQVQSLNMRSCQLGP 514
           +L++SSN L   +       LS L+ L L++N          +    +++L+  +  +  
Sbjct: 62  LLNLSSNVLYETLD---LESLSTLRTLDLNNNYV-----QELLVGPSIETLHAANNNISR 113

Query: 515 SFPSWLKTQQGVSFLDFSNASISGPIPNWFWDISSKLSLLNVSLNQLQGQLPNPLNIAPF 574
              S     QG   +  +N  I+           S++  L++ LN++   +      A  
Sbjct: 114 VSCSRG---QGKKNIYLANNKITMLRDLDEGCR-SRVQYLDLKLNEID-TVNFAELAASS 168

Query: 575 ADV---DFRSNLLEG-PIPLPIVEIELLDLSNNHFSGPIPQNISGSMPNLIFLSVSGNRL 630
             +   + + N +      +   +++ LDLS+N  +  +          + ++S+  N+L
Sbjct: 169 DTLEHLNLQYNFIYDVKGQVVFAKLKTLDLSSNKLAF-MGPEFQS-AAGVTWISLRNNKL 226

Query: 631 TGKIPGSIGEMQLLQVIDLSRNSISGSISSSIGNCTFLKVLDLSYSSLSGVIPASLGQLT 690
              I  ++   Q L+  DL  N      +         +V  ++  ++  +   +  + T
Sbjct: 227 V-LIEKALRFSQNLEHFDLRGNGFH-CGTLRDFFSKNQRVQTVAKQTVKKLTGQNEEECT 284

Query: 691 RLQSLHLNNNKLTGNLPSSFQNLTSLETLDLGNNRFSGNIPSLLGNGFVG---LRILSLR 747
                H                L +L+  +       G+    L          R +   
Sbjct: 285 VPTLGHYGAYCCEDLPAPFADRLIALKRKEHALLSGQGSETERLECERENQARQREIDAL 344

Query: 748 SNAFSGEIPSKLSNLSSLQVLDLAENNLTGSIPGSVGDLKAMAHVQNIVKYLLFGRYRGI 807
              +   I        +   L+  +  L   +         +                G 
Sbjct: 345 KEQYRTVIDQVTLRKQAKITLEQKKKALDEQVSNGRRAHAEL---------------DGT 389

Query: 808 YYEENLVINTKGSSKDTPRLFHFIDLSGNNLHGDFPTQLTKLVGLVVLNLSRNHIGGQIP 867
             +    I  + ++++   L     +           Q  +   +   ++ ++       
Sbjct: 390 LQQAVGQIELQHATEEQSPLQLLRAIVKRYEEMYVEQQSVQNNAIRDWDMYQHKETQLAE 449

Query: 868 ENISG--LHQLASLDLSSNNLS 887
           EN     L+  A L L+S N +
Sbjct: 450 ENARLKKLNGEADLALASANAT 471

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score =  136 bits (343), Expect = 7e-34
 Identities = 61/488 (12%), Positives = 125/488 (25%), Gaps = 99/488 (20%)

Query: 424 GNLKNLTKLNLPGNQLNGTLPETLGSLPELSVLDVSSNSLTGIISEIHFSRLSKLKFLGL 483
            N        +  + L   L     S   +  LD+S N L+ I +    +  +KL+ L L
Sbjct: 7   QNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAAD-LAPFTKLELLNL 65

Query: 484 SSNSFILNVSSSWIPPFQVQSLNMRSCQLGPSFPSWLKTQQGVSFLDFSNASISGPIPNW 543
           SSN              +          L                               
Sbjct: 66  SSNVL------YETLDLE---------SL------------------------------- 79

Query: 544 FWDISSKLSLLNVSLNQLQGQLPNPLNIAPFADVDFRSNLLEGPIPLPIVEIELLDLSNN 603
                S L  L+++ N +Q +L    +I     +   +N +           + + L+NN
Sbjct: 80  -----STLRTLDLNNNYVQ-ELLVGPSIE---TLHAANNNISRVSCSRGQGKKNIYLANN 130

Query: 604 HFSGPIPQNISGSMPNLIFLSVSGNRLTG-KIPGSIGEMQLLQVIDLSRNSISGSISSSI 662
             +  +     G    + +L +  N +              L+ ++L  N I   +   +
Sbjct: 131 KITM-LRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIY-DVKGQV 188

Query: 663 GNCTFLKVLDLSYSSLSGVIPASLGQLTRLQSLHLNNNKLTGNLPSSFQNLTSLETLDLG 722
                LK LDLS + L+  +         +  + L NNKL   +  + +   +LE  DL 
Sbjct: 189 -VFAKLKTLDLSSNKLA-FMGPEFQSAAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLR 245

Query: 723 NNRFSGNIPSLLGNGFVGLRILSLRSNAFSGEIPSKLSNLSSLQVLDLAENNLTGSIPGS 782
            N F         +     R+ ++                +   +               
Sbjct: 246 GNGFHCGTLRDFFSKN--QRVQTVAKQTVKKLTGQNEEECTVPTLGHYGAYCCEDLPAPF 303

Query: 783 VGDLKAMAHVQNIVKYLLFGRYRGIYYEENLVINTKGSSKDTPRLFHFIDLSGNNLHGDF 842
              L A+   ++ +                                        +     
Sbjct: 304 ADRLIALKRKEHALLSGQ-----------------------------------GSETERL 328

Query: 843 PTQLTKLVGLVVLNLSRNHIGGQIPENISGLHQLASLDLSSNNLSGGIPSSLSSLSFLGY 902
             +         ++  +      I +         +L+     L   + +   + + L  
Sbjct: 329 ECERENQARQREIDALKEQYRTVIDQVTLRKQAKITLEQKKKALDEQVSNGRRAHAELDG 388

Query: 903 INLSRNQL 910
                   
Sbjct: 389 TLQQAVGQ 396

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score =  122 bits (307), Expect = 3e-29
 Identities = 64/520 (12%), Positives = 141/520 (27%), Gaps = 51/520 (9%)

Query: 221 NLTSPAVLDLSLNHFNSLFPNWLVNISTLVYVDLSDCDLYGRIPIGFGELPNLQYLSLAG 280
           N     +  ++ +       +   +   +  +DLS   L             L+ L+L+ 
Sbjct: 8   NGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLS- 66

Query: 281 NNNLSGSCSQLFRGSWKKIQILNFASNKLHGKLPSSVANMTSLTNFDLFDKKVEGGIPSS 340
           +N L  +       S   ++ L+  +N +       +    S+      +  +   +  S
Sbjct: 67  SNVLYETLD---LESLSTLRTLDLNNNYV-----QELLVGPSIETLHAANNNIS-RVSCS 117

Query: 341 IARLCYLKEFDLSGNNLTGSLPEILQGTDLCVSSNSPLPSLISMRLGNNHLKG-KLPEWL 399
             +    K   L+ N +T                      +  + L  N +      E  
Sbjct: 118 RGQG--KKNIYLANNKITMLRDLDEGC----------RSRVQYLDLKLNEIDTVNFAELA 165

Query: 400 SQLENLVELTLSYNLLQGPIPASLGNLKNLTKLNLPGNQLNGTLPETLGSLPELSVLDVS 459
           +  + L  L L YN +   +   +     L  L+L  N+L   +     S   ++ + + 
Sbjct: 166 ASSDTLEHLNLQYNFIYD-VKGQV-VFAKLKTLDLSSNKLA-FMGPEFQSAAGVTWISLR 222

Query: 460 SNSLTGIISEIHFSRLSKLKFLGLSSNSFILNVSSSWIPPF-QVQSLNMRSCQLGPSFPS 518
           +N L  I           L+   L  N F       +     +VQ++  ++ +       
Sbjct: 223 NNKLVLIEKA--LRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQN- 279

Query: 519 WLKTQQGVSFLDFSNASISGPIPNWFWDISSKLSLLNVSLNQLQGQLPNPLNIAPFADVD 578
             +     +   +        +P  F D    L     +L   QG     L         
Sbjct: 280 -EEECTVPTLGHYGAYCCE-DLPAPFADRLIALKRKEHALLSGQGSETERLECERENQAR 337

Query: 579 FRSNLLEGPIPLPIVEIELLDLSNNHFSGPIPQNISGSMPNLIFLSVSGNRLTGKIPGSI 638
            R                 +D     +   +   ++      I L      L  ++    
Sbjct: 338 QRE----------------IDALKEQYRT-VIDQVTLRKQAKITLEQKKKALDEQVSNGR 380

Query: 639 GEMQLLQVIDLSRNSISGSISSSIGNCTFLKVLDLSYSSLS-GVIPASLGQLTRLQSLHL 697
                L             +  +    + L++L           +     Q   ++   +
Sbjct: 381 RAHAELDGTLQQAVG-QIELQHATEEQSPLQLLRAIVKRYEEMYVEQQSVQNNAIRDWDM 439

Query: 698 NNNKLTGNLPSSFQNLTSLETLDLGNNRFSGNIPSLLGNG 737
             +K T     + +        DL     +  +  L+   
Sbjct: 440 YQHKETQLAEENARLKKLNGEADLALASANATLQELVVRE 479

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score =  121 bits (304), Expect = 6e-29
 Identities = 60/395 (15%), Positives = 131/395 (33%), Gaps = 45/395 (11%)

Query: 94  SGSLLEYLDLSFNTFNDIPIPEFLGSLENLQYLNLSEAGFTGVVPSSLGNLHRLQYFDVS 153
           +G+  +   ++ ++           S  N++ L+LS    + +  + L    +L+  ++S
Sbjct: 8   NGNRYKIEKVTDSSLKQAL-ASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLS 66

Query: 154 A-ELFALSADSLDWLTGLVSLKHLAMNRVDLSLVGSEWLGILKNLPNLTELHLSVCGLTG 212
           +  L+         L  L +L+ L     DL+   + ++  L   P++  LH +      
Sbjct: 67  SNVLYETLD-----LESLSTLRTL-----DLN---NNYVQELLVGPSIETLHAANN---- 109

Query: 213 SITSITPVNLTSPAVLDLSLNHFNSLFPNWLVNISTLVYVDLSDCDLYGRIPIG--FGEL 270
           +I+ ++         + L+ N    L        S + Y+DL   ++   +         
Sbjct: 110 NISRVSCSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEI-DTVNFAELAASS 168

Query: 271 PNLQYLSLAGNNNLSGSCSQLFRGSWKKIQILNFASNKLHGKLPSSVANMTSLTNFDLFD 330
             L++L+L   N +     Q+    + K++ L+ +SNKL   +     +   +T   L +
Sbjct: 169 DTLEHLNLQ-YNFIYDVKGQVV---FAKLKTLDLSSNKLA-FMGPEFQSAAGVTWISLRN 223

Query: 331 KKVEGGIPSSIARLCYLKEFDLSGNNLTGSLPEILQG-------------TDLCVSSNSP 377
            K+   I  ++     L+ FDL GN                           L   +   
Sbjct: 224 NKLV-LIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQNEEE 282

Query: 378 LPSLISMRLGNNHLKGKLPEWLSQLENLVELTLSYNLLQG----PIPASLGNLKNLTKLN 433
                    G    +     +  +L  L     +    QG     +     N     +++
Sbjct: 283 CTVPTLGHYGAYCCEDLPAPFADRLIALKRKEHALLSGQGSETERLECERENQARQREID 342

Query: 434 LPGNQLNGTLPETLGSLPELSVLDVSSNSLTGIIS 468
               Q    + +          L+    +L   +S
Sbjct: 343 ALKEQYRTVIDQVTLRKQAKITLEQKKKALDEQVS 377

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score =  109 bits (275), Expect = 2e-25
 Identities = 54/256 (21%), Positives = 92/256 (35%), Gaps = 30/256 (11%)

Query: 657 SISSSIGNCTFLKVLDLSYSSLSGVIPASLGQLTRLQSLHLNNNKLTGNLPSSFQNLTSL 716
           +I     N    K+  ++ SSL   + +       ++ L L+ N L+    +     T L
Sbjct: 1   AIHEIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKL 60

Query: 717 ETLDLGNNRFSGNIPSLLGNGFVGLRILSLRSNAFSGEIPSKLSNLSSLQVLDLAENNLT 776
           E L+L +N        L       LR L L +N        +L    S++ L  A NN++
Sbjct: 61  ELLNLSSNVLY-ETLDL--ESLSTLRTLDLNNNYV-----QELLVGPSIETLHAANNNIS 112

Query: 777 GSIPGSVGDLKAMAHVQNIVKYLLFGRYRGIYYEENLVINTKGSSKDTPRLFHFIDLSGN 836
                     K +    N                  + +          R+  ++DL  N
Sbjct: 113 RVSCSRGQGKKNIYLANN-----------------KITMLRDLDEGCRSRV-QYLDLKLN 154

Query: 837 NLHG-DFPTQLTKLVGLVVLNLSRNHIGGQIPENISGLHQLASLDLSSNNLSGGIPSSLS 895
            +   +F         L  LNL  N I   +   +    +L +LDLSSN L+  +     
Sbjct: 155 EIDTVNFAELAASSDTLEHLNLQYNFI-YDVKGQVV-FAKLKTLDLSSNKLA-FMGPEFQ 211

Query: 896 SLSFLGYINLSRNQLS 911
           S + + +I+L  N+L 
Sbjct: 212 SAAGVTWISLRNNKLV 227

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 97.6 bits (243), Expect = 3e-21
 Identities = 54/407 (13%), Positives = 113/407 (27%), Gaps = 42/407 (10%)

Query: 98  LEYLDLSFNTFNDIPIPEFLGSLE----------------NLQYLNLSEAGFTGVVPSSL 141
           LE L+LS N   +    E L +L                 +++ L+ +    + V  S  
Sbjct: 60  LELLNLSSNVLYETLDLESLSTLRTLDLNNNYVQELLVGPSIETLHAANNNISRVSCSRG 119

Query: 142 GNLHRLQYFDVSA-ELFALSADSLDWLTGLVSLKHLAMNRVDLSLVGSEWLGILKNLPNL 200
                +    ++  ++  L        + +  L  L +N     +    +  +  +   L
Sbjct: 120 QGKKNI---YLANNKITMLRDLDEGCRSRVQYL-DLKLNE----IDTVNFAELAASSDTL 171

Query: 201 TELHLSVCGLTGSITSITP-VNLTSPAVLDLSLNHFNSLFPNWLVNISTLVYVDLSDCDL 259
             L+L        I  +   V       LDLS N    +      + + + ++ L +  L
Sbjct: 172 EHLNLQYN----FIYDVKGQVVFAKLKTLDLSSNKLAFM-GPEFQSAAGVTWISLRNNKL 226

Query: 260 YGRIPIGFGELPNLQYLSLAGNNNLSGSCSQLFRGSWKKIQILNFASNKLHGKLPSSVAN 319
              I        NL++  L G N       + F    +++Q +      +      +   
Sbjct: 227 -VLIEKALRFSQNLEHFDLRG-NGFHCGTLRDFFSKNQRVQTVA--KQTVKKLTGQNEEE 282

Query: 320 MTSLTNFDLFDKKVEGGIPSSIARLCYLKEFDLSGNNLTGSLPEILQGTDLCVSSNSPLP 379
            T  T         E        RL  LK  + +  +  GS  E L+             
Sbjct: 283 CTVPTLGHYGAYCCEDLPAPFADRLIALKRKEHALLSGQGSETERLE------CERENQA 336

Query: 380 SLISMRLGNNHLKGKLPEWLSQLENLVELTLSYNLLQGPIPASLGNLKNLTKLNLPGNQL 439
               +       +  + +   + +  + L      L   +         L          
Sbjct: 337 RQREIDALKEQYRTVIDQVTLRKQAKITLEQKKKALDEQVSNGRRAHAELDGTLQQAVGQ 396

Query: 440 NGTLPETLGSLPELSVLDVSSNSLTGIISEIHFSRLSKLKFLGLSSN 486
              L         L +L         +  E    + + ++   +  +
Sbjct: 397 I-ELQHATEEQSPLQLLRAIVKRYEEMYVEQQSVQNNAIRDWDMYQH 442

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 66.8 bits (163), Expect = 2e-11
 Identities = 43/335 (12%), Positives = 92/335 (27%), Gaps = 24/335 (7%)

Query: 98  LEYLDLSFNTFNDIPIPEFLGSLENLQYLNLSEAGFTGVVPSSLGNLHRLQYFDVSA-EL 156
           ++YLDL  N  + +   E   S + L++LNL       V         +L+  D+S+ +L
Sbjct: 146 VQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDV--KGQVVFAKLKTLDLSSNKL 203

Query: 157 FALSADSLDWLTGLVSLKHLAMNRVDLSLVGSEWLGILKNLPNLTELHLSVCGLTGSITS 216
             +  +          +  +++    L L+       L+   NL    L   G      +
Sbjct: 204 AFMGPE----FQSAAGVTWISLRNNKLVLIEKA----LRFSQNLEHFDLRGNGF--HCGT 253

Query: 217 ITPVNLTSPAVLDLSLNHFNSLFPNWLVNISTLVYVDLSDCDLYGRIPIGFGELPNLQYL 276
           +      +  V  ++      L        +                 +       L  L
Sbjct: 254 LRDFFSKNQRVQTVAKQTVKKLTGQNEEECTVPTLGHYGAYCC---EDLPAPFADRLIAL 310

Query: 277 SLAGNNNLSGSCSQL-----FRGSWKKIQILNFASNKLHGKLPSSVANMTSLTNFDLFD- 330
               +  LSG  S+       R +  + + ++    +    +        +    +    
Sbjct: 311 KRKEHALLSGQGSETERLECERENQARQREIDALKEQYRTVIDQVTLRKQAKITLEQKKK 370

Query: 331 --KKVEGGIPSSIARLCYLKEFDLSGNNLTGSLPEILQGTDLCVSSNSPLPSLISMRLGN 388
              +       + A L    +  +    L  +  E      L           +  +   
Sbjct: 371 ALDEQVSNGRRAHAELDGTLQQAVGQIELQHATEEQSPLQLLRAIVKRYEEMYVEQQSVQ 430

Query: 389 NHLKGKLPEWLSQLENLVELTLSYNLLQGPIPASL 423
           N+       +  +   L E       L G    +L
Sbjct: 431 NNAIRDWDMYQHKETQLAEENARLKKLNGEADLAL 465

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 51.4 bits (123), Expect = 1e-06
 Identities = 15/67 (22%), Positives = 27/67 (40%)

Query: 852 LVVLNLSRNHIGGQIPENISGLHQLASLDLSSNNLSGGIPSSLSSLSFLGYINLSRNQLS 911
             +  ++ + +   +         +  LDLS N LS    + L+  + L  +NLS N L 
Sbjct: 12  YKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLY 71

Query: 912 GKIPFEG 918
             +  E 
Sbjct: 72  ETLDLES 78

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score =  142 bits (359), Expect = 6e-36
 Identities = 75/333 (22%), Positives = 131/333 (39%), Gaps = 20/333 (6%)

Query: 580 RSNLLEGPIPLPIVEIELLDLSNNHFSGPIPQNISGSMPNLIFLSVSGNRLTGKIPGSIG 639
           R   +  P  +P  E  LLDL  N     + Q+   S P+L  L ++ N ++   PG+  
Sbjct: 20  RKRFVAVPEGIP-TETRLLDLGKNRIKT-LNQDEFASFPHLEELELNENIVSAVEPGAFN 77

Query: 640 EMQLLQVIDLSRNSISGSISSSI-GNCTFLKVLDLSYSSLSGVIPASLGQLTRLQSLHLN 698
            +  L+ + L  N +   I   +    + L  LD+S + +  ++      L  L+SL + 
Sbjct: 78  NLFNLRTLGLRSNRLK-LIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVG 136

Query: 699 NNKLTGNLPSSFQNLTSLETLDLGNNRFSGNIPSLLGNGFVGLRILSLRSNAFSGEIPSK 758
           +N L      +F  L SLE L L     + +IP+   +   GL +L LR    +      
Sbjct: 137 DNDLVYISHRAFSGLNSLEQLTLEKCNLT-SIPTEALSHLHGLIVLRLRHLNINAIRDYS 195

Query: 759 LSNLSSLQVLDLAENNLTGSIPGSVGDLKAMAHVQNIVKYLLFGRYRGIYYEENLVINTK 818
              L  L+VL+++      ++  +             +  L            NL     
Sbjct: 196 FKRLYRLKVLEISHWPYLDTMTPNCLYGLN-------LTSLSITHC-------NLTAVPY 241

Query: 819 GSSKDTPRLFHFIDLSGNNLHGDFPTQLTKLVGLVVLNLSRNHIGGQIPENISGLHQLAS 878
            + +    L  F++LS N +     + L +L+ L  + L    +    P    GL+ L  
Sbjct: 242 LAVRHLVYL-RFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRV 300

Query: 879 LDLSSNNLSGGIPSSLSSLSFLGYINLSRNQLS 911
           L++S N L+    S   S+  L  + L  N L+
Sbjct: 301 LNVSGNQLTTLEESVFHSVGNLETLILDSNPLA 333

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score =  125 bits (317), Expect = 1e-30
 Identities = 64/372 (17%), Positives = 123/372 (33%), Gaps = 72/372 (19%)

Query: 404 NLVELTLSYNLLQGPIPASLGNLKNLTKLNLPGNQLNGTLPETLGSLPELSVLDVSSNSL 463
               L L  N ++        +  +L +L L  N ++   P    +L  L  L + SN L
Sbjct: 33  ETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRL 92

Query: 464 TGIISEIHFSRLSKLKFLGLSSNSFILNVSSSWIPPFQVQSLNMRSCQLGPSFPSWLKTQ 523
             +I    F+ LS L  L +S N          +  +  Q L              LK+ 
Sbjct: 93  K-LIPLGVFTGLSNLTKLDISENKI------VILLDYMFQDL------------YNLKS- 132

Query: 524 QGVSFLDFSNASISGPIPNWFWDISSKLSLLNVSLNQLQGQLPNPLNIAPFADVDFRSNL 583
                L+  +  +       F  ++S L  L +    L                      
Sbjct: 133 -----LEVGDNDLVYISHRAFSGLNS-LEQLTLEKCNLT--------------------- 165

Query: 584 LEGPIPLPIVEIELLDLSNNHFSGPIPQNISGSMPNLIFLSVSGNRLTGKIPGSIGEMQL 643
                           +     S          +  LI L +    +      S   +  
Sbjct: 166 ---------------SIPTEALSH---------LHGLIVLRLRHLNINAIRDYSFKRLYR 201

Query: 644 LQVIDLSRNSISGSISSSIGNCTFLKVLDLSYSSLSGVIPASLGQLTRLQSLHLNNNKLT 703
           L+V+++S      +++ +      L  L +++ +L+ V   ++  L  L+ L+L+ N ++
Sbjct: 202 LKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPIS 261

Query: 704 GNLPSSFQNLTSLETLDLGNNRFSGNIPSLLGNGFVGLRILSLRSNAFSGEIPSKLSNLS 763
               S    L  L+ + L   + +  +      G   LR+L++  N  +    S   ++ 
Sbjct: 262 TIEGSMLHELLRLQEIQLVGGQLA-VVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVG 320

Query: 764 SLQVLDLAENNL 775
           +L+ L L  N L
Sbjct: 321 NLETLILDSNPL 332

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score =  124 bits (314), Expect = 3e-30
 Identities = 64/310 (20%), Positives = 110/310 (35%), Gaps = 55/310 (17%)

Query: 626 SGNRLTGKIPGSIGEMQLLQVIDLSRNSISGSISSSIGNCTFLKVLDLSYSSLSGVIPAS 685
              R    +P  I      +++DL +N I         +   L+ L+L+ + +S V P +
Sbjct: 19  HRKRFV-AVPEGI--PTETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGA 75

Query: 686 LGQLTRLQSLHLNNNKLTGNLPSSFQNLTSLETLDLGNNRFSGNIPSLLGNGFVGLRILS 745
              L  L++L L +N+L       F  L++L  LD+  N+    +   +      L+ L 
Sbjct: 76  FNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIV-ILLDYMFQDLYNLKSLE 134

Query: 746 LRSNAFSGEIPSK-LSNLSSLQVLDLAENNLTGSIPGSVGDLKAMAHVQNIVKYLLFGRY 804
           +  N     I  +  S L+SL+ L L + NLT SIP                        
Sbjct: 135 VGDNDLV-YISHRAFSGLNSLEQLTLEKCNLT-SIP------------------------ 168

Query: 805 RGIYYEENLVINTKGSSKDTPRLFHFIDLSGNNLHGDFPTQLTKLVGLVVLNLSRNHIGG 864
                          +      L   + L   N++        +L  L VL +S      
Sbjct: 169 -------------TEALSHLHGL-IVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLD 214

Query: 865 QIPENISGLHQLASLDLSSNNLSGGIPSSLSSLSFLGYINLSRNQLSGKIPFEGHMTTFD 924
            +  N      L SL ++  NL+     ++  L +L ++NLS N +          +T +
Sbjct: 215 TMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPI----------STIE 264

Query: 925 ASSFAGNPGL 934
            S       L
Sbjct: 265 GSMLHELLRL 274

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score =  123 bits (311), Expect = 7e-30
 Identities = 78/382 (20%), Positives = 138/382 (36%), Gaps = 64/382 (16%)

Query: 348 KEFDLSGNNLTGSLPEILQGTDLCVSSNSPLPSLISMRLGNNHLKGKLPEWLSQLENLVE 407
           +           ++PE +                  + LG N +K    +  +   +L E
Sbjct: 14  RAVLCHRKRFV-AVPEGI------------PTETRLLDLGKNRIKTLNQDEFASFPHLEE 60

Query: 408 LTLSYNLLQGPIPASLGNLKNLTKLNLPGNQLNGTLPETLGSLPELSVLDVSSNSLTGII 467
           L L+ N++    P +  NL NL  L L  N+L          L  L+ LD+S N +  I+
Sbjct: 61  LELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIV-IL 119

Query: 468 SEIHFSRLSKLKFLGLSSNSFILNVSSSWIPPFQVQSLNMRSCQLGPSFPSWLKTQQGVS 527
            +  F  L  LK L +  N         +I       LN             L+      
Sbjct: 120 LDYMFQDLYNLKSLEVGDNDL------VYISHRAFSGLNS------------LEQ----- 156

Query: 528 FLDFSNASISGPIPNWFWDISSKLSLLNVSLNQLQGQLPNPLNIAPFADVDFR--SNLLE 585
            L     +++         +   L +L +    +         I  ++   F+    L  
Sbjct: 157 -LTLEKCNLTSIPTEALSHLHG-LIVLRLRHLNIN-------AIRDYS---FKRLYRLKV 204

Query: 586 GPIPLPIVEIELLDLSNNHFSGPIPQNISGSMPNLIFLSVSGNRLTGKIPGSIGEMQLLQ 645
                       L++S+  +   +  N      NL  LS++   LT     ++  +  L+
Sbjct: 205 ------------LEISHWPYLDTMTPNCL-YGLNLTSLSITHCNLTAVPYLAVRHLVYLR 251

Query: 646 VIDLSRNSISGSISSSIGNCTFLKVLDLSYSSLSGVIPASLGQLTRLQSLHLNNNKLTGN 705
            ++LS N IS    S +     L+ + L    L+ V P +   L  L+ L+++ N+LT  
Sbjct: 252 FLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTL 311

Query: 706 LPSSFQNLTSLETLDLGNNRFS 727
             S F ++ +LETL L +N  +
Sbjct: 312 EESVFHSVGNLETLILDSNPLA 333

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score =  120 bits (302), Expect = 9e-29
 Identities = 65/365 (17%), Positives = 121/365 (33%), Gaps = 50/365 (13%)

Query: 101 LDLSFNTFNDIPIPEFLGSLENLQYLNLSEAGFTGVVPSSLGNLHRLQYFDVSA-ELFAL 159
           +      F  +P     G     + L+L +     +      +   L+  +++   + A+
Sbjct: 16  VLCHRKRFVAVPE----GIPTETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAV 71

Query: 160 SADSLDWLTGLVSLKHLAMNRVDLSLVGSEWLGILKNLPNLTELHLSVCGLTGSITSITP 219
              + +    L +L+ L +    L L+     G+   L NLT+L +S   +   +     
Sbjct: 72  EPGAFN---NLFNLRTLGLRSNRLKLIPL---GVFTGLSNLTKLDISENKIV-ILLDYMF 124

Query: 220 VNLTSPAVLDLSLNHFNSLFPNWLVNISTLVYVDLSDCDLYGRIPIG-FGELPNLQYLSL 278
            +L +   L++  N    +       +++L  + L  C+L   IP      L  L  L L
Sbjct: 125 QDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNL-TSIPTEALSHLHGLIVLRL 183

Query: 279 AGNNNLSGSCSQLFRGSWKKIQILNFASNKLHGKLPSSVANMTSLTNFDLFDKKVEGGIP 338
             + N++      F+                          +  L   ++        + 
Sbjct: 184 R-HLNINAIRDYSFKR-------------------------LYRLKVLEISHWPYLDTMT 217

Query: 339 SSIARLCYLKEFDLSGNNLTGSLPEILQGTDLCVSSNSPLPSLISMRLGNNHLKGKLPEW 398
            +      L    ++  NLT ++P           +   L  L  + L  N +       
Sbjct: 218 PNCLYGLNLTSLSITHCNLT-AVPY---------LAVRHLVYLRFLNLSYNPISTIEGSM 267

Query: 399 LSQLENLVELTLSYNLLQGPIPASLGNLKNLTKLNLPGNQLNGTLPETLGSLPELSVLDV 458
           L +L  L E+ L    L    P +   L  L  LN+ GNQL         S+  L  L +
Sbjct: 268 LHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLETLIL 327

Query: 459 SSNSL 463
            SN L
Sbjct: 328 DSNPL 332

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score =  110 bits (277), Expect = 1e-25
 Identities = 66/333 (19%), Positives = 123/333 (36%), Gaps = 35/333 (10%)

Query: 299 IQILNFASNKLHGKLPSSVANMTSLTNFDLFDKKVEGGIPSSIARLCYLKEFDLSGNNLT 358
            ++L+   N++        A+   L   +L +  V    P +   L  L+   L  N L 
Sbjct: 34  TRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLK 93

Query: 359 GSLPEILQGTDLCVSSNSPLPSLISMRLGNNHLKGKLPEWLSQLENLVELTLSYNLLQGP 418
                +  G          L +L  + +  N +   L      L NL  L +  N L   
Sbjct: 94  LIPLGVFTG----------LSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYI 143

Query: 419 IPASLGNLKNLTKLNLPGNQLNGTLPETLGSLPELSVLDVSSNSLTGIISEIHFSRLSKL 478
              +   L +L +L L    L     E L  L  L VL +   ++  I     F RL +L
Sbjct: 144 SHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIRDY-SFKRLYRL 202

Query: 479 KFLGLSSNSFILNVSSSWIPPFQVQSLNMRSCQLGPSFPSW-LKTQQGVSFLDFSNASIS 537
           K L +S   ++  ++ + +    + SL++  C L  + P   ++    + FL+ S   IS
Sbjct: 203 KVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLT-AVPYLAVRHLVYLRFLNLSYNPIS 261

Query: 538 GPIPNWFWDISSKLSLLNVSLNQLQGQLPNPLNIAPFADVDFRSNLLEGPIPLPIVEIEL 597
               +   ++  +L  + +   QL         + P+A                   + +
Sbjct: 262 TIEGSMLHEL-LRLQEIQLVGGQLA-------VVEPYAFRGLNY-------------LRV 300

Query: 598 LDLSNNHFSGPIPQNISGSMPNLIFLSVSGNRL 630
           L++S N  +  + +++  S+ NL  L +  N L
Sbjct: 301 LNVSGNQLTT-LEESVFHSVGNLETLILDSNPL 332

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score =  108 bits (271), Expect = 8e-25
 Identities = 61/301 (20%), Positives = 115/301 (38%), Gaps = 30/301 (9%)

Query: 219 PVNLTSPAVLDLSLNHFNSLFPNWLVNISTLVYVDLSDCDLYGRIPIG-FGELPNLQYLS 277
           P       +LDL  N   +L  +   +   L  ++L++  +   +  G F  L NL+ L 
Sbjct: 31  PTETR---LLDLGKNRIKTLNQDEFASFPHLEELELNENIV-SAVEPGAFNNLFNLRTLG 86

Query: 278 LAGNNNLSGSCSQLFRGSWKKIQILNFASNKLHGKLPSSVANMTSLTNFDLFDKKVEGGI 337
           L  +N L      +F G    +  L+ + NK+   L     ++ +L + ++ D  +    
Sbjct: 87  LR-SNRLKLIPLGVFTGL-SNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYIS 144

Query: 338 PSSIARLCYLKEFDLSGNNLTGSLPEILQGTDLCVSSNSPLPSLISMRLGNNHLKGKLPE 397
             + + L  L++  L   NLT    E L            L  LI +RL + ++      
Sbjct: 145 HRAFSGLNSLEQLTLEKCNLTSIPTEALSH----------LHGLIVLRLRHLNINAIRDY 194

Query: 398 WLSQLENLVELTLSYNLLQGPIPASLGNLKNLTKLNLPGNQLNGTLPETLGSLPELSVLD 457
              +L  L  L +S+      +  +     NLT L++    L       +  L  L  L+
Sbjct: 195 SFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLN 254

Query: 458 VSSNSLTGIISEIHFSRLSKLKFLGLSSNSFILNVSSSWIPPF------QVQSLNMRSCQ 511
           +S N ++ I   +    L +L+ + L           + + P+       ++ LN+   Q
Sbjct: 255 LSYNPISTIEGSM-LHELLRLQEIQLVGGQL------AVVEPYAFRGLNYLRVLNVSGNQ 307

Query: 512 L 512
           L
Sbjct: 308 L 308

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score =  105 bits (264), Expect = 6e-24
 Identities = 52/278 (18%), Positives = 107/278 (38%), Gaps = 23/278 (8%)

Query: 499 PFQVQSLNMRSCQLGPSFPSWLKTQQGVSFLDFSNASISGPIPNWFWDISSKLSLLNVSL 558
           P + + L++   ++         +   +  L+ +   +S   P  F ++ + L  L +  
Sbjct: 31  PTETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFN-LRTLGLRS 89

Query: 559 NQLQGQLPNPLNIAPFADVDFRSNLLEGPIPLPIVEIELLDLSNNHFSGPIPQNISGSMP 618
           N+L+  +P                +  G   L       LD+S N     +   +   + 
Sbjct: 90  NRLK-LIPL--------------GVFTGLSNL-----TKLDISENKIVI-LLDYMFQDLY 128

Query: 619 NLIFLSVSGNRLTGKIPGSIGEMQLLQVIDLSRNSISGSISSSIGNCTFLKVLDLSYSSL 678
           NL  L V  N L      +   +  L+ + L + +++   + ++ +   L VL L + ++
Sbjct: 129 NLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNI 188

Query: 679 SGVIPASLGQLTRLQSLHLNNNKLTGNLPSSFQNLTSLETLDLGNNRFSGNIPSLLGNGF 738
           + +   S  +L RL+ L +++      +  +     +L +L + +   +  +P L     
Sbjct: 189 NAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLT-AVPYLAVRHL 247

Query: 739 VGLRILSLRSNAFSGEIPSKLSNLSSLQVLDLAENNLT 776
           V LR L+L  N  S    S L  L  LQ + L    L 
Sbjct: 248 VYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLA 285

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score =  104 bits (262), Expect = 1e-23
 Identities = 69/344 (20%), Positives = 112/344 (32%), Gaps = 69/344 (20%)

Query: 98  LEYLDLSFNTFNDIPIPEFLGSLENLQYLNLSEAGFTGVVPSSLGNLHRLQYFDVSA-EL 156
           LE L+L+ N  + +  P    +L NL+ L L       +       L  L   D+S  ++
Sbjct: 58  LEELELNENIVSAVE-PGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKI 116

Query: 157 FALSADSLDWLTGLVSLKHLAMNRVDLSLVGSEWLGILKNLPNLTELHLSVCGLTGSITS 216
             L          L +LK L +   DL  +          L +L +L L  C LT SI +
Sbjct: 117 VILLDYMFQ---DLYNLKSLEVGDNDLVYISH---RAFSGLNSLEQLTLEKCNLT-SIPT 169

Query: 217 ITPVNLTSPAVLDLSLNHFNSLFPNWLVNISTLVYVDLSDCDLYGRIPIGFGELPNLQYL 276
               +L    VL L   + N++       +  L  +++S       +        NL  L
Sbjct: 170 EALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSL 229

Query: 277 SLAGNNNLSGSCSQLFRGSWKKIQILNFASNKLHGKLPSSVANMTSLTNFDLFDKKVEGG 336
           S+  + NL+                           +P                      
Sbjct: 230 SI-THCNLT--------------------------AVP---------------------- 240

Query: 337 IPSSIARLCYLKEFDLSGNNLTGSLPEILQGTDLCVSSNSPLPSLISMRLGNNHLKGKLP 396
              ++  L YL+  +LS N ++ ++           S    L  L  ++L    L    P
Sbjct: 241 -YLAVRHLVYLRFLNLSYNPIS-TIEG---------SMLHELLRLQEIQLVGGQLAVVEP 289

Query: 397 EWLSQLENLVELTLSYNLLQGPIPASLGNLKNLTKLNLPGNQLN 440
                L  L  L +S N L     +   ++ NL  L L  N L 
Sbjct: 290 YAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLETLILDSNPLA 333

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 89.0 bits (221), Expect = 1e-18
 Identities = 49/272 (18%), Positives = 90/272 (33%), Gaps = 69/272 (25%)

Query: 645 QVIDLSRNSISGSISSSIGNCTFLKVLDLSYSSLSGVIPASLGQLTRLQSLHLNNNKLTG 704
           + +   R     ++   I   T  ++LDL  + +  +          L+ L LN N ++ 
Sbjct: 14  RAVLCHRKRFV-AVPEGI--PTETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSA 70

Query: 705 NLPSSFQNLTSLETLDLGNNRFSGNIPSLLGNGFVGLRILSLRSNAFSGEIPSKLSNLSS 764
             P +F NL +L TL L +NR                    +    F+G        LS+
Sbjct: 71  VEPGAFNNLFNLRTLGLRSNRLK-----------------LIPLGVFTG--------LSN 105

Query: 765 LQVLDLAENNLTGSIPGSVGDLKAMAHVQNIVKYLLFGRYRGIYYEENLVINTKGSSKDT 824
           L  LD++EN +   +       + + +++++                             
Sbjct: 106 LTKLDISENKIV-ILLD--YMFQDLYNLKSL----------------------------- 133

Query: 825 PRLFHFIDLSGNNLHGDFPTQLTKLVGLVVLNLSRNHIGGQIPENI-SGLHQLASLDLSS 883
                  ++  N+L        + L  L  L L + ++   IP    S LH L  L L  
Sbjct: 134 -------EVGDNDLVYISHRAFSGLNSLEQLTLEKCNLT-SIPTEALSHLHGLIVLRLRH 185

Query: 884 NNLSGGIPSSLSSLSFLGYINLSRNQLSGKIP 915
            N++     S   L  L  + +S       + 
Sbjct: 186 LNINAIRDYSFKRLYRLKVLEISHWPYLDTMT 217

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score =  140 bits (354), Expect = 4e-35
 Identities = 76/425 (17%), Positives = 139/425 (32%), Gaps = 33/425 (7%)

Query: 386 LGNNHLKGKLPEWLSQLENLVELTLSYNLLQGPIPASLGNLKNLTKLNLPGNQLNGTLPE 445
           +  N++       +  L  L  L +S+N +Q    +     + L  L+L  N+L   +  
Sbjct: 28  ISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNKLV-KIS- 85

Query: 446 TLGSLPELSVLDVSSNSLTGIISEIHFSRLSKLKFLGLSSN-----SFILNVSSSWIPPF 500
                  L  LD+S N+   +     F  +S+LKFLGLS+      S +     +     
Sbjct: 86  -CHPTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEKSSVLPIAHLNISKVL 144

Query: 501 QVQSLNMRSCQLGPSFPSWLKTQQGVSFLDFSNASISGPIPNWFWDISSKLSLLNVSLNQ 560
            V        +       +         + F        I +      + L L N+    
Sbjct: 145 LVLGETYGEKEDPEGLQDFNTESL---HIVFPTNKEFHFILDVSVKTVANLELSNIKCVL 201

Query: 561 LQGQLPNPLNIAP------------FADVDFRSN-LLEGPIPLPIVEIELLDLSNNHFSG 607
              +    L+I                +++   N  +     +    +    +SN    G
Sbjct: 202 EDNKCSYFLSILAKLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVWYFSISNVKLQG 261

Query: 608 PIPQNISG----SMPNLIFLSVSGNRLTGKIPGSIGEMQLLQVIDLSRNSISGSISSSIG 663
            +          S+  L    V  +               + + + + +           
Sbjct: 262 QLDFRDFDYSGTSLKALSIHQVVSDVFGFPQSYIYEIFSNMNIKNFTVSGTRMVHMLCPS 321

Query: 664 NCTFLKVLDLSYSSLSGVIPASLGQLTRLQSLHLNNNKLT--GNLPSSFQNLTSLETLDL 721
             +    LD S + L+  +  + G LT L++L L  N+L     +      + SL+ LD+
Sbjct: 322 KISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDI 381

Query: 722 GNNRFSGNIPSLLGNGFVGLRILSLRSNAFSGEIPSKLSNLSSLQVLDLAENNLTGSIPG 781
             N  S +      +    L  L++ SN  +  I   L     ++VLDL  N +  SIP 
Sbjct: 382 SQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCL--PPRIKVLDLHSNKIK-SIPK 438

Query: 782 SVGDL 786
            V  L
Sbjct: 439 QVVKL 443

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score =  136 bits (343), Expect = 9e-34
 Identities = 84/475 (17%), Positives = 165/475 (34%), Gaps = 44/475 (9%)

Query: 321 TSLTNFDLFDKKVEGGIPSSIARLCYLKEFDLSGNNLTGSLPEILQGTDLCVSSNSPLPS 380
              T  ++    +     S I  L  L+   +S N +      + +              
Sbjct: 21  QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKF----------NQE 70

Query: 381 LISMRLGNNHLKGKLPEWLSQLENLVELTLSYNLLQG-PIPASLGNLKNLTKLNLPGNQL 439
           L  + L +N L  K+        NL  L LS+N     PI    GN+  L  L L    L
Sbjct: 71  LEYLDLSHNKLV-KIS--CHPTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHL 127

Query: 440 NGTLPETLGSLPELSVLDVSSNSLTGIISEIHFSRLSKLK----FLGLSSNSFILNVSSS 495
             +    +  L    VL V   +             +       F       FIL+VS  
Sbjct: 128 EKSSVLPIAHLNISKVLLVLGETYGEKEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVK 187

Query: 496 WIPPFQVQSL----NMRSCQLGPSFPSWLKTQQGVSFLDFSNASISGPIPNWFWDISSKL 551
            +   ++ ++        C    S  + L+T   +S L  +N   +         +    
Sbjct: 188 TVANLELSNIKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETTWNSFIRILQLVWHT 247

Query: 552 SLLNVSLNQLQGQLPNPLNIAPFADVDFRSNLLEGPIPLPIVEIELLDLSNNHFSGPIPQ 611
           ++   S++ ++ Q         ++    +              + +  + ++ F  P   
Sbjct: 248 TVWYFSISNVKLQGQLDFRDFDYSGTSLK-------------ALSIHQVVSDVFGFP-QS 293

Query: 612 NISGSMPNLIFLSVSGNRLTGKIPGSIGEMQLLQVIDLSRNSISGSISSSIGNCTFLKVL 671
            I     N+   + + +           ++     +D S N ++ ++  + G+ T L+ L
Sbjct: 294 YIYEIFSNMNIKNFTVSGTRMVHMLCPSKISPFLHLDFSNNLLTDTVFENCGHLTELETL 353

Query: 672 DLSYSSLSGVIPAS--LGQLTRLQSLHLNNNKLTGNLPS-SFQNLTSLETLDLGNNRFSG 728
            L  + L  +   +    Q+  LQ L ++ N ++ +          SL +L++ +N  + 
Sbjct: 354 ILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTD 413

Query: 729 NIPSLLGNGFVGLRILSLRSNAFSGEIPSKLSNLSSLQVLDLAENNLTGSIPGSV 783
            I   L      +++L L SN     IP ++  L +LQ L++A N L  S+P  +
Sbjct: 414 TIFRCL---PPRIKVLDLHSNKIK-SIPKQVVKLEALQELNVASNQLK-SVPDGI 463

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score =  118 bits (297), Expect = 6e-28
 Identities = 81/403 (20%), Positives = 164/403 (40%), Gaps = 26/403 (6%)

Query: 98  LEYLDLSFNTFNDIPIPEFLGSLENLQYLNLSEAGFTGVVPSSLGNLHRLQYFDVSAELF 157
           L++LDLSFN F+ +PI +  G++  L++L LS           + +L+  +   V  E +
Sbjct: 92  LKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEKSSVLPIAHLNISKVLLVLGETY 151

Query: 158 AL--SADSLDWLTGLVSLKHLAMNRVDLSLVGSEWLGILKNLPNLTELHLSVCGLTGSIT 215
                 + L       SL  +     +   +    +  + NL       +          
Sbjct: 152 GEKEDPEGLQDFN-TESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFL 210

Query: 216 SITPVNLTSPAVLDLSLNHFNSLFPNW-----LVNISTLVYVDLSDCDLYGRIPIGFGEL 270
           SI     T+P + +L+LN+  + + ++     LV  +T+ Y  +S+  L G++     + 
Sbjct: 211 SILAKLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVWYFSISNVKLQGQLDFRDFDY 270

Query: 271 P--NLQYLSL--AGNNNLSGSCSQLFRGSWKKIQILNFASNKLHGKLPSSVANMTSLTNF 326
              +L+ LS+    ++      S ++      + I NF  +          + ++   + 
Sbjct: 271 SGTSLKALSIHQVVSDVFGFPQSYIYEIF-SNMNIKNFTVSGTRMVHMLCPSKISPFLHL 329

Query: 327 DLFDKKVEGGIPSSIARLCYLKEFDLSGNNLTGSLPEILQGTDLCVSSNSPLPSLISMRL 386
           D  +  +   +  +   L  L+   L  N L   L +I + T         + SL  + +
Sbjct: 330 DFSNNLLTDTVFENCGHLTELETLILQMNQLK-ELSKIAEMTT-------QMKSLQQLDI 381

Query: 387 GNNHLKGKLP-EWLSQLENLVELTLSYNLLQGPIPASLGNLKNLTKLNLPGNQLNGTLPE 445
             N +         S  ++L+ L +S N+L   I   L     +  L+L  N++  ++P+
Sbjct: 382 SQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCL--PPRIKVLDLHSNKIK-SIPK 438

Query: 446 TLGSLPELSVLDVSSNSLTGIISEIHFSRLSKLKFLGLSSNSF 488
            +  L  L  L+V+SN L   + +  F RL+ L+ + L +N +
Sbjct: 439 QVVKLEALQELNVASNQLK-SVPDGIFDRLTSLQKIWLHTNPW 480

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score =  116 bits (292), Expect = 3e-27
 Identities = 83/513 (16%), Positives = 153/513 (29%), Gaps = 82/513 (15%)

Query: 404 NLVELTLSYNLLQGPIPASLGNLKNLTKLNLPGNQLNGTLPETLGSLPELSVLDVSSNSL 463
               L +S N +     + + +L  L  L +  N++            EL  LD+S N L
Sbjct: 22  KTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNKL 81

Query: 464 TGIISEIHFSRLSKLKFLGLSSNSFILNVSSSWIPPF----QVQSLNMRSCQLGPSFPSW 519
                +I       LK L LS N+F    +      F    Q++ L + +  L  S    
Sbjct: 82  V----KISCHPTVNLKHLDLSFNAF---DALPICKEFGNMSQLKFLGLSTTHLEKSSVLP 134

Query: 520 LKTQQGVSFLDFSNASISGPIPNWFWDISSKLSLLNVSLNQLQGQLPNPLNIAPFADVDF 579
           +        L              + +      L + +   L    P         DV  
Sbjct: 135 IAHLNISKVLLVLG--------ETYGEKEDPEGLQDFNTESLHIVFPTNKEFHFILDVSV 186

Query: 580 RSNLLEGPIPLPIVEIELLDLSNNHFSGPIPQNISGSMPNLIFLSVSGNRLTGKIPGSIG 639
           ++        +  V  +            +  N   S   L  +  + N           
Sbjct: 187 KTVANLELSNIKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETTWNSFI-------- 238

Query: 640 EMQLLQVIDLSRNSISGSISSSIGNCTFLKVLDLSYSSLSGVIPASLGQLTRLQSLHLNN 699
             ++LQ++  +          SI N      LD      SG        L  L    + +
Sbjct: 239 --RILQLVWHTTVW-----YFSISNVKLQGQLDFRDFDYSGT------SLKALSIHQVVS 285

Query: 700 NKLTGNLPSSFQNLTSLETLDLGNNRFSGNIPSLLGNGFVGLRILSLRSNAFSGEIPSKL 759
           +         ++  +++   +   +  +  +  L  +       L   +N  +  +    
Sbjct: 286 DVFGFPQSYIYEIFSNMNIKNFTVSG-TRMVHMLCPSKISPFLHLDFSNNLLTDTVFENC 344

Query: 760 SNLSSLQVLDLAENNLTGSIPGSVGDLKAMAHVQNIVKYLLFGRYRGIYYEENLVINTKG 819
            +L+ L+ L L  N L   +         M  +Q                          
Sbjct: 345 GHLTELETLILQMNQLK-ELSKIAEMTTQMKSLQ-------------------------- 377

Query: 820 SSKDTPRLFHFIDLSGNNLHGDFPTQL-TKLVGLVVLNLSRNHIGGQIPENISGLHQLAS 878
                      +D+S N++  D      +    L+ LN+S N +   I   +    ++  
Sbjct: 378 ----------QLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCL--PPRIKV 425

Query: 879 LDLSSNNLSGGIPSSLSSLSFLGYINLSRNQLS 911
           LDL SN +   IP  +  L  L  +N++ NQL 
Sbjct: 426 LDLHSNKIKS-IPKQVVKLEALQELNVASNQLK 457

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score =  115 bits (289), Expect = 7e-27
 Identities = 92/507 (18%), Positives = 195/507 (38%), Gaps = 58/507 (11%)

Query: 227 VLDLSLNHFNSLFPNWLVNISTLVYVDLSDCDLYGRIPIG-FGELPNLQYLSLAGNNNLS 285
           +L++S N+ + L+ + ++++S L  + +S   +   + I  F     L+YL L+ N  + 
Sbjct: 25  ILNISQNYISELWTSDILSLSKLRILIISHNRI-QYLDISVFKFNQELEYLDLSHNKLVK 83

Query: 286 GSCSQLFRGSWKKIQILNFASNKLHGKLPSSVANMTSLTNFDLFDKKVEGGIPSSIARLC 345
            SC          ++ L+ + N              +L     F              + 
Sbjct: 84  ISCHPT-----VNLKHLDLSFNAF-----------DALPICKEFGN------------MS 115

Query: 346 YLKEFDLSGNNLTGSLPEILQGTDLCVSSNSPLPSLISMRLGNNHLKGKLPEWLSQLENL 405
            LK   LS  +L  S    +   +          S + + LG  + +    E    L++ 
Sbjct: 116 QLKFLGLSTTHLEKSSVLPIAHLN---------ISKVLLVLGETYGE---KEDPEGLQDF 163

Query: 406 VELTLSYNLLQGPIPASLGNLKNLTKLNLPGNQLNGTLPETLGSLPELSVLDVSSNSLTG 465
              +L            + ++   T  NL  + +   L +   S     +  + +N    
Sbjct: 164 NTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILAKLQTNPKLS 223

Query: 466 IISEIHFSRLSKLKFLGLSSNSFILNVSSSWIPPFQVQSLNMRSCQLGPSFPSWLKTQQG 525
            ++      L+ ++    S    +  V  + +  F + ++ ++       F     + + 
Sbjct: 224 NLT------LNNIETTWNSFIRILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKA 277

Query: 526 VSFLDFSNASISGPIPNWFWDISSKLSLLNVSLNQLQG-QLPNPLNIAPFADVDFRSNLL 584
           +S     +     P  ++ ++I S +++ N +++  +   +  P  I+PF  +DF +NLL
Sbjct: 278 LSIHQVVSDVFGFP-QSYIYEIFSNMNIKNFTVSGTRMVHMLCPSKISPFLHLDFSNNLL 336

Query: 585 ---EGPIPLPIVEIELLDLSNNHFSG-PIPQNISGSMPNLIFLSVSGNRLTGKIP-GSIG 639
                     + E+E L L  N          ++  M +L  L +S N ++     G   
Sbjct: 337 TDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCS 396

Query: 640 EMQLLQVIDLSRNSISGSISSSIGNCTFLKVLDLSYSSLSGVIPASLGQLTRLQSLHLNN 699
             + L  +++S N ++ +I   +     +KVLDL  + +   IP  + +L  LQ L++ +
Sbjct: 397 WTKSLLSLNMSSNILTDTIFRCLP--PRIKVLDLHSNKIK-SIPKQVVKLEALQELNVAS 453

Query: 700 NKLTGNLPSSFQNLTSLETLDLGNNRF 726
           N+L       F  LTSL+ + L  N +
Sbjct: 454 NQLKSVPDGIFDRLTSLQKIWLHTNPW 480

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score =  103 bits (257), Expect = 7e-23
 Identities = 76/435 (17%), Positives = 152/435 (34%), Gaps = 44/435 (10%)

Query: 98  LEYLDLSFNTFNDIPIPEFLGSLENLQYLNLSEAGFTGVVPSSLGNLHRLQYFDVSA-EL 156
              L++S N  +++   +   SL  L+ L +S      +  S       L+Y D+S  +L
Sbjct: 23  TTILNISQNYISELWTSDI-LSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNKL 81

Query: 157 FALSADSLDWLTGLVSLKHLAMNRVDLSLVGSEWLGILKNLPNLTELHLSVCGLTGSITS 216
             +S          V+LKHL ++      +         N+  L  L LS       +  
Sbjct: 82  VKISCHP------TVNLKHLDLSFNAFDALPI--CKEFGNMSQLKFLGLSTT----HLEK 129

Query: 217 ITPVNLTSPAVLDLSLNHFNSLF----PNWLVNIST--LVYVDLSDCDLYGRIPIGFGEL 270
            + + +    +  + L    +      P  L + +T  L  V  ++ + +  + +    +
Sbjct: 130 SSVLPIAHLNISKVLLVLGETYGEKEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTV 189

Query: 271 PNLQYLSLAGN-------NNLSGSCSQLFRGSWKKIQILNFASNKLHGKLPSSVANMTSL 323
            NL+  ++            LS             + + N  +          +   T++
Sbjct: 190 ANLELSNIKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTV 249

Query: 324 TNFDLFDKKVEGGIPSSIARLCYLKEFDLSGNNLTGSLPEILQGTDLCVSSNSPLPSLIS 383
             F + + K++G +           +FD SG +L       +         +       +
Sbjct: 250 WYFSISNVKLQGQLDFR--------DFDYSGTSLKALSIHQVVSDVFGFPQSYIYEIFSN 301

Query: 384 M---RLGNNHLKGKLPEWLSQLENLVELTLSYNLLQGPIPASLGNLKNLTKLNLPGNQLN 440
           M       +  +       S++   + L  S NLL   +  + G+L  L  L L  NQL 
Sbjct: 302 MNIKNFTVSGTRMVHMLCPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLK 361

Query: 441 GTLPETLG---SLPELSVLDVSSNSLTGIISEIHFSRLSKLKFLGLSSNSFILNVSSSWI 497
             L +       +  L  LD+S NS++    +   S    L  L +SSN     +     
Sbjct: 362 -ELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRC-- 418

Query: 498 PPFQVQSLNMRSCQL 512
            P +++ L++ S ++
Sbjct: 419 LPPRIKVLDLHSNKI 433

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 89.5 bits (222), Expect = 1e-18
 Identities = 80/496 (16%), Positives = 158/496 (31%), Gaps = 93/496 (18%)

Query: 427 KNLTKLNLPGNQLNGTLPETLGSLPELSVLDVSSNSLTGIISEIHFSRLSKLKFLGLSSN 486
           +  T LN+  N ++      + SL +L +L +S N +  +   + F    +L++L LS N
Sbjct: 21  QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISV-FKFNQELEYLDLSHN 79

Query: 487 SFILNVSSSWIPPFQVQSLNMRSCQLGPSFPSWLKTQQGVSFLDFSNASISGPIPNWFWD 546
             ++ +S        ++ L++                             + PI   F  
Sbjct: 80  K-LVKISCHPTV--NLKHLDLSFNAFD-----------------------ALPICKEF-G 112

Query: 547 ISSKLSLLNVSLNQLQGQLPNPLNIAPFADVDFRSNLLEGPIPLPIVEIELLDLSNNHFS 606
             S+L  L +S   L+     P+     + V                + +   L + +  
Sbjct: 113 NMSQLKFLGLSTTHLEKSSVLPIAHLNISKVLLVLG------ETYGEKEDPEGLQDFN-- 164

Query: 607 GPIPQNISGSMPNLIFLSVSGNRLTGKIPGSIGEMQLLQVIDLSRNSISGSISSSIGNCT 666
                       N  F  +    +       +  ++ +   +     +S  I + +    
Sbjct: 165 --TESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLS--ILAKLQTNP 220

Query: 667 FLKVLDLSYSSLSGVIPASLGQL---TRLQSLHLNNNKLTGNLPS-----SFQNLTSLET 718
            L  L L+    +      + QL   T +    ++N KL G L       S  +L +L  
Sbjct: 221 KLSNLTLNNIETTWNSFIRILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSI 280

Query: 719 LDLGNNRFSGNIPSLLGNGFVGLRILSLRSNAFSGEIPSKLSNLSSLQVLDLAENNLTGS 778
             + ++ F     S +   F  + I +   +          S +S    LD + N LT +
Sbjct: 281 HQVVSDVFG-FPQSYIYEIFSNMNIKNFTVSGTRMVHMLCPSKISPFLHLDFSNNLLTDT 339

Query: 779 IPGSVGDLKAMAHVQNIVKYLLFGRYRGIYYEENLVINTKGSSKDTPRLFHFIDLSGNNL 838
           +  + G L  +                                         + L  N L
Sbjct: 340 VFENCGHLTEL---------------------------------------ETLILQMNQL 360

Query: 839 H--GDFPTQLTKLVGLVVLNLSRNHIGGQIPENI-SGLHQLASLDLSSNNLSGGIPSSLS 895
                     T++  L  L++S+N +     +   S    L SL++SSN L+  I   L 
Sbjct: 361 KELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCLP 420

Query: 896 SLSFLGYINLSRNQLS 911
               +  ++L  N++ 
Sbjct: 421 PR--IKVLDLHSNKIK 434

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 88.4 bits (219), Expect = 3e-18
 Identities = 57/361 (15%), Positives = 120/361 (33%), Gaps = 31/361 (8%)

Query: 96  SLLEYLDLSFNTFNDIPIPEFLGSLENLQYLNL-----SEAGFTGVVPSSLGNLHRLQYF 150
           + L    +           E    L++    +L     +   F  ++  S+  +  L+  
Sbjct: 136 AHLNISKVLLVLGETYGEKEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELS 195

Query: 151 DVSAELFALSADS----LDWLTGLVSLKHLAMNRVDLSLVGSEWLGILKNLPNLTELHLS 206
           ++   L           L  L     L +L +N ++ +      +  L     +    +S
Sbjct: 196 NIKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVWYFSIS 255

Query: 207 VCGLTG----SITSITPVNLTSPAVLDLSLNHFNSLFPNWLVNISTLVYVDLSDCDLYGR 262
              L G         +  +L + ++  +  + F           S +   + +       
Sbjct: 256 NVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVFGFPQSYIYEIFSNMNIKNFTVSGTRMV 315

Query: 263 IPIGFGELPNLQYLSLAGNNNLSGSCSQLFRGSWKKIQILNFASNKLH--GKLPSSVANM 320
             +   ++    +L    NN L+ +  +   G   +++ L    N+L    K+      M
Sbjct: 316 HMLCPSKISPFLHLDF-SNNLLTDTVFENC-GHLTELETLILQMNQLKELSKIAEMTTQM 373

Query: 321 TSLTNFDLFDKKVEGGIPSSI-ARLCYLKEFDLSGNNLTGSLPEILQGTDLCVSSNSPLP 379
            SL   D+    V         +    L   ++S N LT ++   L             P
Sbjct: 374 KSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCL------------PP 421

Query: 380 SLISMRLGNNHLKGKLPEWLSQLENLVELTLSYNLLQGPIPASLGNLKNLTKLNLPGNQL 439
            +  + L +N +K  +P+ + +LE L EL ++ N L+         L +L K+ L  N  
Sbjct: 422 RIKVLDLHSNKIK-SIPKQVVKLEALQELNVASNQLKSVPDGIFDRLTSLQKIWLHTNPW 480

Query: 440 N 440
           +
Sbjct: 481 D 481

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 78.8 bits (194), Expect = 3e-15
 Identities = 63/392 (16%), Positives = 129/392 (32%), Gaps = 58/392 (14%)

Query: 577 VDFRSNLLEG-PIPLPIVEIELLDLSNNHFSGPIPQNISGSMPNLIFLSVSGNRLTGKIP 635
           VD   N L   P  L   +  +L++S N+ S     +I   +  L  L +S NR+     
Sbjct: 5   VDRSKNGLIHVPKDLS-QKTTILNISQNYISELWTSDILS-LSKLRILIISHNRIQYLDI 62

Query: 636 GSIGEMQLLQVIDLSRNSISGSISSSIGNCTFLKVLDLSYSSLSGV-IPASLGQLTRLQS 694
                 Q L+ +DLS N +      S      LK LDLS+++   + I    G +++L+ 
Sbjct: 63  SVFKFNQELEYLDLSHNKLV---KISCHPTVNLKHLDLSFNAFDALPICKEFGNMSQLKF 119

Query: 695 LHLNNNKLTGNLPSSFQ--NLTSLETLDLGNNRFSGNIPSLLGNGFVGLRILSLRSNAFS 752
           L L+   L  +        N++ +  +         +   L       L I+   +  F 
Sbjct: 120 LGLSTTHLEKSSVLPIAHLNISKVLLVLGETYGEKEDPEGLQDFNTESLHIVFPTNKEFH 179

Query: 753 GEIPSKLSNLSSLQVLDLAEN----------NLTGSIPGSVGDLKAMAHVQNIVKYLLFG 802
             +   +  +++L++ ++             ++   +  +        +           
Sbjct: 180 FILDVSVKTVANLELSNIKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETTWNSFIR 239

Query: 803 RYRGIYYEENLVINTKGSSKDTPRLFHFIDLSGNNLHG-------------------DFP 843
             + +++      +           F   D SG +L                     +  
Sbjct: 240 ILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVFGFPQSYIYEIF 299

Query: 844 TQLT------------------KLVGLVVLNLSRNHIGGQIPENISGLHQLASLDLSSNN 885
           + +                   K+   + L+ S N +   + EN   L +L +L L  N 
Sbjct: 300 SNMNIKNFTVSGTRMVHMLCPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQ 359

Query: 886 LS--GGIPSSLSSLSFLGYINLSRNQLSGKIP 915
           L     I    + +  L  +++S+N +S    
Sbjct: 360 LKELSKIAEMTTQMKSLQQLDISQNSVSYDEK 391

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 44.1 bits (104), Expect = 2e-04
 Identities = 36/202 (17%), Positives = 61/202 (30%), Gaps = 49/202 (24%)

Query: 718 TLDLGNNRFSGNIPSLLGNGFVGLRILSLRSNAFSGEIPSKLSNLSSLQVLDLAENNLTG 777
            +D   N    ++P  L        IL++  N  S    S + +LS L++L ++ N +  
Sbjct: 4   LVDRSKNGLI-HVPKDL---SQKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQY 59

Query: 778 SIPGSVGDLKAMAHVQNIVKYLLFGRYRGIYYEENLVINTKGSSKDTPRLFHFIDLSGNN 837
                    + +       +YL                                DLS N 
Sbjct: 60  LDISVFKFNQEL-------EYL--------------------------------DLSHNK 80

Query: 838 LHGDFPTQLTKLVGLVVLNLSRNHIGGQIPEN--ISGLHQLASLDLSSNNLSGGIPSSLS 895
           L          L     L+LS N     +P       + QL  L LS+ +L       ++
Sbjct: 81  LVKISCHPTVNLK---HLDLSFNAFD-ALPICKEFGNMSQLKFLGLSTTHLEKSSVLPIA 136

Query: 896 SLSFLGYINLSRNQLSGKIPFE 917
            L+    + +       K   E
Sbjct: 137 HLNISKVLLVLGETYGEKEDPE 158

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score =  136 bits (345), Expect = 8e-35
 Identities = 78/435 (17%), Positives = 143/435 (32%), Gaps = 77/435 (17%)

Query: 337 IPSSIARLCYLKEFDLSGNNLTGSLPEILQGTDLCVSSNSPLPSLISMRLGNNHLKGKLP 396
           I S++   C     D+  +  T  +    +        +  L +   +   N+ ++    
Sbjct: 13  IDSNLQYDCVFY--DVHIDMQTQDVYFGFE--------DITLNNQKIVTFKNSTMRKLPA 62

Query: 397 EWLSQLENLVELTLSYNLLQGPIPASLGNLKNLTKLNLPGNQLNGTLPETLGSLPELSVL 456
             L     +  L L+   ++     +      + KL +  N +    P    ++P L+VL
Sbjct: 63  ALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVL 122

Query: 457 DVSSNSLTGIISEIHFSRLSKLKFLGLSSNSFILNVSSSWIPPFQVQSLNMRSCQLGPSF 516
            +  N L+ +   I F    KL  L +S+N+       ++     +Q+L + S +L    
Sbjct: 123 VLERNDLSSLPRGI-FHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRL---- 177

Query: 517 PSWLKTQQGVSFLDFSNASISGPIPNWFWDISSKLSLLNVSLNQLQGQLPNPLNIAPFAD 576
                    V      +                 L   NVS N L   L  P+       
Sbjct: 178 -------THVDLSLIPS-----------------LFHANVSYNLLS-TLAIPIA------ 206

Query: 577 VDFRSNLLEGPIPLPIVEIELLDLSNNHFSGPIPQNISGSMPNLIFLSVSGNRLTGKIPG 636
                             +E LD S+N  +  +          L  L +  N LT     
Sbjct: 207 ------------------VEELDASHNSINV-VR---GPVNVELTILKLQHNNLTD--TA 242

Query: 637 SIGEMQLLQVIDLSRNSISGSISSSIGNCTFLKVLDLSYSSLSGVIPASLGQLTRLQSLH 696
            +     L  +DLS N +   +         L+ L +S + L   +      +  L+ L 
Sbjct: 243 WLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLV-ALNLYGQPIPTLKVLD 301

Query: 697 LNNNKLTGNLPSSFQNLTSLETLDLGNNRFSGNIPSLLGNGFVGLRILSLRSNAFSGEIP 756
           L++N L  ++  +      LE L L +N       +L  +    L+ L+L  N +     
Sbjct: 302 LSHNHLL-HVERNQPQFDRLENLYLDHNSIV----TLKLSTHHTLKNLTLSHNDWDCNSL 356

Query: 757 SKL-SNLSSLQVLDL 770
             L  N++   V D 
Sbjct: 357 RALFRNVARPAVDDA 371

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score =  128 bits (323), Expect = 6e-32
 Identities = 64/431 (14%), Positives = 142/431 (32%), Gaps = 66/431 (15%)

Query: 97  LLEYLDLSFNTFNDIPIPEFLGSLENLQYLNLSEAGFTGVVPSSLGNLHRLQYFDVSA-E 155
           +   + +   T +     E + +L N + +    +    +  + L +  +++  +++  +
Sbjct: 22  VFYDVHIDMQTQDVYFGFEDI-TLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQ 80

Query: 156 LFALSADSLDWLTGLVSLKHLAMNRVDLSLVGSEWLGILKNLPNLTELHLSVCGLTGSIT 215
           +  +   +        +++ L M    +  +      + +N+P LT L L    L+ S+ 
Sbjct: 81  IEEIDTYAFA---YAHTIQKLYMGFNAIRYLPP---HVFQNVPLLTVLVLERNDLS-SLP 133

Query: 216 SITPVNLTSPAVLDLSLNHFNSLFPNWLVNISTLVYVDLSDCDLYGRIPIGFGELPNLQY 275
                N      L +S N+   +  +     ++L  + LS   L     +    +P+L +
Sbjct: 134 RGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTH---VDLSLIPSLFH 190

Query: 276 LSLAGNNNLSGSCSQLFRGSWKKIQILNFASNKLHGKLPSSVANMTSLTNFDLFDKKVEG 335
            +++ N                                 S++A   ++   D     +  
Sbjct: 191 ANVSYNL-------------------------------LSTLAIPIAVEELDASHNSIN- 218

Query: 336 GIPSSIARLCYLKEFDLSGNNLTGSLPEILQGTDLCVSSNSPLPSLISMRLGNNHLKGKL 395
            +   +     L    L  NNLT              +     P L+ + L  N L+  +
Sbjct: 219 VVRGPV--NVELTILKLQHNNLTD------------TAWLLNYPGLVEVDLSYNELEKIM 264

Query: 396 PEWLSQLENLVELTLSYNLLQGPIPASLGNLKNLTKLNLPGNQLNGTLPETLGSLPELSV 455
                +++ L  L +S N L   +      +  L  L+L  N L   +         L  
Sbjct: 265 YHPFVKMQRLERLYISNNRLVA-LNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLEN 322

Query: 456 LDVSSNSLTGIISEIHFSRLSKLKFLGLSSNSFILNVSSSWIPPFQVQSL--NMRSCQLG 513
           L +  NS+      +  S    LK L LS N +  N   +        ++    + C++ 
Sbjct: 323 LYLDHNSIV----TLKLSTHHTLKNLTLSHNDWDCNSLRALFRNVARPAVDDADQHCKID 378

Query: 514 PSFPSWLKTQQ 524
                 L  ++
Sbjct: 379 YQLEHGLCCKE 389

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score =  127 bits (321), Expect = 9e-32
 Identities = 77/388 (19%), Positives = 132/388 (34%), Gaps = 73/388 (18%)

Query: 546 DISSKLSLLNVSLNQLQGQLPNPLNIAPFAD---VDFRSNLLE---GPIPLPIVEIELLD 599
           ++       +V ++     +          +   V F+++ +      +     ++ELL+
Sbjct: 16  NLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLPAALLDSFRQVELLN 75

Query: 600 LSNNHFSGPIPQNISGSMPNLIFLSVSGNRLTGKIPGSIGEMQLLQVIDLSRNSISGSIS 659
           L++      I          +  L +  N +    P     + LL V+ L RN +S    
Sbjct: 76  LNDLQIEE-IDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPR 134

Query: 660 SSIGNCTFLKVLDLSYSSLSGVIPASLGQLTRLQSLHLNNNKLT---------------- 703
               N   L  L +S ++L  +   +    T LQ+L L++N+LT                
Sbjct: 135 GIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVDLSLIPSLFHANVS 194

Query: 704 GNLPSSFQNLTSLETLDLGNNRFSGNIPSLLGNGFVGLRILSLRSNAFSGEIPSKLSNLS 763
            NL S+     ++E LD  +N    +I  + G   V L IL L+ N  + +    L N  
Sbjct: 195 YNLLSTLAIPIAVEELDASHN----SINVVRGPVNVELTILKLQHNNLT-DTAW-LLNYP 248

Query: 764 SLQVLDLAENNLTGSIPGSVGDLKAMAHVQNIVKYLLFGRYRGIYYEENLVINTKGSSKD 823
            L  +DL+ N L   I                                            
Sbjct: 249 GLVEVDLSYNELE-KIM-------------------------------------YHPFVK 270

Query: 824 TPRLFHFIDLSGNNLHGDFPTQLTKLVGLVVLNLSRNHIGGQIPENISGLHQLASLDLSS 883
             RL   + +S N L          +  L VL+LS NH+   +  N     +L +L L  
Sbjct: 271 MQRL-ERLYISNNRLV-ALNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDH 327

Query: 884 NNLSGGIPSSLSSLSFLGYINLSRNQLS 911
           N++     S+  +L  L    LS N   
Sbjct: 328 NSIVTLKLSTHHTLKNL---TLSHNDWD 352

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score =  126 bits (319), Expect = 2e-31
 Identities = 71/375 (18%), Positives = 137/375 (36%), Gaps = 66/375 (17%)

Query: 402 LENLVELTLSYNLLQGPIPASLGNLKNLTKLNLPGNQLNGTLPETLGSLPELSVLDVSSN 461
           L N   +T   + ++    A L + + +  LNL   Q+             +  L +  N
Sbjct: 44  LNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFN 103

Query: 462 SLTGIISEIHFSRLSKLKFLGLSSNSFILNVSSSWIPPFQVQSLNMRSCQLGPSFPSWLK 521
           ++   +    F  +  L  L L  N        S +P     +               L 
Sbjct: 104 AIR-YLPPHVFQNVPLLTVLVLERNDL------SSLPRGIFHNTPK------------LT 144

Query: 522 TQQGVSFLDFSNASISGPIPNWFWDISSKLSLLNVSLNQLQGQLPNPLNIAPFADVDFRS 581
           T      L  SN ++   I +  +  ++ L  L +S N+L                    
Sbjct: 145 T------LSMSNNNLER-IEDDTFQATTSLQNLQLSSNRLT---------------HVDL 182

Query: 582 NLLEGPIPLPIVEIELLDLSNNHFSGPIPQNISGSMPNLIFLSVSGNRLTGKIPGSIGEM 641
           +L+          +   ++S N  S      ++     +  L  S N +   + G +   
Sbjct: 183 SLIPS--------LFHANVSYNLLS-----TLAIP-IAVEELDASHNSIN-VVRGPV--N 225

Query: 642 QLLQVIDLSRNSISGSISSSIGNCTFLKVLDLSYSSLSGVIPASLGQLTRLQSLHLNNNK 701
             L ++ L  N+++ +  + + N   L  +DLSY+ L  ++     ++ RL+ L+++NN+
Sbjct: 226 VELTILKLQHNNLTDT--AWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNR 283

Query: 702 LTGNLPSSFQNLTSLETLDLGNNRFSGNIPSLLGNGFVGLRILSLRSNAFSGEIPSKLSN 761
           L   L    Q + +L+ LDL +N    ++       F  L  L L  N+    +   LS 
Sbjct: 284 LV-ALNLYGQPIPTLKVLDLSHNHLL-HVERNQPQ-FDRLENLYLDHNSIV-TLK--LST 337

Query: 762 LSSLQVLDLAENNLT 776
             +L+ L L+ N+  
Sbjct: 338 HHTLKNLTLSHNDWD 352

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score =  122 bits (308), Expect = 6e-30
 Identities = 83/471 (17%), Positives = 151/471 (32%), Gaps = 105/471 (22%)

Query: 272 NLQYLSLAGNNNLSGSCSQLFRG----SWKKIQILNFASNKLHGKLPSSVANMTSLTNFD 327
           NLQY  +  + ++      ++ G    +    +I+ F ++ +  KLP             
Sbjct: 16  NLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMR-KLP------------- 61

Query: 328 LFDKKVEGGIPSSIARLCYLKEFDLSGNNLTGSLPEILQGTDLCVSSNSPLPSLISMRLG 387
                      + +     ++  +L+   +                      ++  + +G
Sbjct: 62  ----------AALLDSFRQVELLNLNDLQIEEIDTYAFAY----------AHTIQKLYMG 101

Query: 388 NNHLKGKLPEWLSQLENLVELTLSYNLLQGPIPASLGNLKNLTKLNLPGNQLNGTLPETL 447
            N ++   P     +  L  L L  N L         N   LT L++  N L     +T 
Sbjct: 102 FNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTF 161

Query: 448 GSLPELSVLDVSSNSLTGIISEIHFSRLSKLKFLGLSSNSFILNVSSSWIPPFQVQSLNM 507
            +   L  L +SSN LT     +  S +  L    +S N                     
Sbjct: 162 QATTSLQNLQLSSNRLT----HVDLSLIPSLFHANVSYNLL------------------- 198

Query: 508 RSCQLGPSFPSWLKTQQGVSFLDFSNASISGPIPNWFWDISSKLSLLNVSLNQLQGQLPN 567
                     S L     V  LD S+ SI+            +L++L +  N L      
Sbjct: 199 ----------STLAIPIAVEELDASHNSINVVRGPVN----VELTILKLQHNNLT----- 239

Query: 568 PLNIAPFADVDFRSNLLEGPIPLPIVEIELLDLSNNHFSGPIPQNISGSMPNLIFLSVSG 627
             + A   +      L+E            +DLS N     I  +    M  L  L +S 
Sbjct: 240 --DTAWLLNY---PGLVE------------VDLSYNELEK-IMYHPFVKMQRLERLYISN 281

Query: 628 NRLTGKIPGSIGEMQLLQVIDLSRNSISGSISSSIGNCTFLKVLDLSYSSLSGVIPASLG 687
           NRL   +      +  L+V+DLS N +   +  +      L+ L L ++S+  +    L 
Sbjct: 282 NRLV-ALNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIVTL---KLS 336

Query: 688 QLTRLQSLHLNNNKLTGNLPSSFQNLTSLETLDLGNNRFSGNIPSLLGNGF 738
               L++L L++N    N   +     ++    + +      I   L +G 
Sbjct: 337 THHTLKNLTLSHNDWDCNSLRAL--FRNVARPAVDDADQHCKIDYQLEHGL 385

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score =  114 bits (287), Expect = 3e-27
 Identities = 60/370 (16%), Positives = 128/370 (34%), Gaps = 63/370 (17%)

Query: 419 IPASLGNLKNLTKLNLPGNQLNGTLPETLGSLPELSVLDVSSNSLTGIISEIHFSRLSKL 478
           I ++L        +++     +        +L    ++   ++++  + + +      ++
Sbjct: 13  IDSNLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLPAAL-LDSFRQV 71

Query: 479 KFLGLSSNSFILNVSSSWIPPFQVQSLNMRSCQLGPSFPSWLKTQQGVSFLDFSNASISG 538
           + L L+            I  +     +             ++       L     +I  
Sbjct: 72  ELLNLNDLQI------EEIDTYAFAYAHT------------IQK------LYMGFNAIRY 107

Query: 539 PIPNWFWDISSKLSLLNVSLNQLQGQLPNPLNIAPFADVDFRSNLLEGPIPLPIVEIELL 598
             P+ F ++   L++L +  N L   LP  +         F +            ++  L
Sbjct: 108 LPPHVFQNVPL-LTVLVLERNDLS-SLPRGI---------FHNT----------PKLTTL 146

Query: 599 DLSNNHFSGPIPQNISGSMPNLIFLSVSGNRLTGKIPGSIGEMQLLQVIDLSRNSISGSI 658
            +SNN+    I  +   +  +L  L +S NRLT  +   +  +  L   ++S N +S   
Sbjct: 147 SMSNNNLER-IEDDTFQATTSLQNLQLSSNRLT-HVD--LSLIPSLFHANVSYNLLS--- 199

Query: 659 SSSIGNCTFLKVLDLSYSSLSGVIPASLGQLTRLQSLHLNNNKLTGNLPSSFQNLTSLET 718
             ++     ++ LD S++S++ V          L  L L +N LT    +   N   L  
Sbjct: 200 --TLAIPIAVEELDASHNSINVV---RGPVNVELTILKLQHNNLTD--TAWLLNYPGLVE 252

Query: 719 LDLGNNRFSGNIPSLLGNGFVGLRILSLRSNAFSGEIPSKLSNLSSLQVLDLAENNLTGS 778
           +DL  N     I          L  L + +N     +      + +L+VLDL+ N+L   
Sbjct: 253 VDLSYNELE-KIMYHPFVKMQRLERLYISNNRLV-ALNLYGQPIPTLKVLDLSHNHLL-H 309

Query: 779 IPGSVGDLKA 788
           +  +      
Sbjct: 310 VERNQPQFDR 319

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 90.9 bits (226), Expect = 2e-19
 Identities = 50/285 (17%), Positives = 98/285 (34%), Gaps = 29/285 (10%)

Query: 657 SISSSIGNCTFLKVLDLSYSSLSGVIPASLGQLTRLQSLHLNNNKLTGNLPSSFQNLTSL 716
            I S++        + +   +           L   + +   N+ +     +   +   +
Sbjct: 12  CIDSNLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLPAALLDSFRQV 71

Query: 717 ETLDLGNNRFSGNIPSLLGNGFVGLRILSLRSNAFSGEIPSKLSNLSSLQVLDLAENNLT 776
           E L+L + +    I +        ++ L +  NA     P    N+  L VL L  N+L+
Sbjct: 72  ELLNLNDLQIE-EIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLS 130

Query: 777 GSIPGSVGDLKAMAHV---QNIVKYLLFGRYRGIYYEENLVIN----TKGSSKDTPRLFH 829
               G   +   +  +    N ++ +    ++     +NL ++    T       P LFH
Sbjct: 131 SLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVDLSLIPSLFH 190

Query: 830 FIDLSGNNLHGDFPTQLTKLVGLVVLNLSRNHIGGQIPENISGLHQLASLDLSSNNLSGG 889
             ++S N L     + L   + +  L+ S N I   +   +    +L  L L  NNL+  
Sbjct: 191 -ANVSYNLL-----STLAIPIAVEELDASHNSI-NVVRGPV--NVELTILKLQHNNLTD- 240

Query: 890 IPSSLSSLSFLGYINLSRNQLSGKIPFEGHMTTFDASSFAGNPGL 934
             + L +   L  ++LS N+L                 F     L
Sbjct: 241 -TAWLLNYPGLVEVDLSYNEL----------EKIMYHPFVKMQRL 274

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score =  133 bits (337), Expect = 2e-34
 Identities = 54/300 (18%), Positives = 98/300 (32%), Gaps = 55/300 (18%)

Query: 613 ISGSMPNLIFLSVSGNRLTGKIPGSIGEMQLLQVIDLSRNSISGSISSSIGNCTFLKVLD 672
           I  +        V+ + L   +         ++ +DLS N +S   ++ +   T L++L+
Sbjct: 5   IKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLN 64

Query: 673 LSYSSLSGVIPASLGQLTRLQSLHLNNNKLTGNLPSSFQNLTSLETLDLGNNRFSGNIPS 732
           LS + L   +   L  L+ L++L LNNN +            S+ETL   NN     I  
Sbjct: 65  LSSNVLYETLD--LESLSTLRTLDLNNNYVQ-----ELLVGPSIETLHAANNN----ISR 113

Query: 733 LLGNGFVGLRILSLRSNAFSGEIPSKLSNLSSLQVLDLAENNLTG-SIPGSVGDLKAMAH 791
           +  +   G + + L +N  +          S +Q LDL  N +   +          +  
Sbjct: 114 VSCSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTL-- 171

Query: 792 VQNIVKYLLFGRYRGIYYEENLVINTKGSSKDTPRLFHFIDLSGNNLHGDFPTQLTKLVG 851
                                                  ++L  N ++ D          
Sbjct: 172 -------------------------------------EHLNLQYNFIY-DVKG-QVVFAK 192

Query: 852 LVVLNLSRNHIGGQIPENISGLHQLASLDLSSNNLSGGIPSSLSSLSFLGYINLSRNQLS 911
           L  L+LS N +   +         +  + L +N L   I  +L     L + +L  N   
Sbjct: 193 LKTLDLSSNKL-AFMGPEFQSAAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFH 250

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score =  125 bits (317), Expect = 9e-32
 Identities = 52/373 (13%), Positives = 113/373 (30%), Gaps = 61/373 (16%)

Query: 395 LPEWLSQLENLVELTLSYNLLQGPIPASLGNLKNLTKLNLPGNQLNGTLPETLGSLPELS 454
           + E            ++ + L+  + +   +  N+ +L+L GN L+      L    +L 
Sbjct: 2   IHEIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLE 61

Query: 455 VLDVSSNSLTGIISEIHFSRLSKLKFLGLSSNSFILNVSSSWIPPFQVQSLNMRSCQLGP 514
           +L++SSN L   +       LS L+ L L++N          +    +++L+  +  +  
Sbjct: 62  LLNLSSNVLYETLD---LESLSTLRTLDLNNNYV-----QELLVGPSIETLHAANNNI-- 111

Query: 515 SFPSWLKTQQGVSFLDFSNASISGPIPNWFWDISSKLSLLNVSLNQLQGQLPNPLNIAPF 574
                      VS                          + ++ N++         +   
Sbjct: 112 ---------SRVSCSRGQG-----------------KKNIYLANNKIT-------MLRDL 138

Query: 575 ADVDFRSNLLEGPIPLPIVEIELLDLSNNHFSGPIPQNISGSMPNLIFLSVSGNRLTGKI 634
            +                  ++ LDL  N         ++ S   L  L++  N +   +
Sbjct: 139 DEGCRSR-------------VQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIY-DV 184

Query: 635 PGSIGEMQLLQVIDLSRNSISGSISSSIGNCTFLKVLDLSYSSLSGVIPASLGQLTRLQS 694
            G +     L+ +DLS N ++  +     +   +  + L  + L  +I  +L     L+ 
Sbjct: 185 KGQVV-FAKLKTLDLSSNKLA-FMGPEFQSAAGVTWISLRNNKLV-LIEKALRFSQNLEH 241

Query: 695 LHLNNNKLT-GNLPSSFQNLTSLETLDLGNNRFSGNIPSLLGNGFVGLRILSLRSNAFSG 753
             L  N    G L   F     ++T+     +                   +        
Sbjct: 242 FDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQNEEECTVPTLGHYGAYCCEDLPA 301

Query: 754 EIPSKLSNLSSLQ 766
               +L  L    
Sbjct: 302 PFADRLIALGHHH 314

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score =  125 bits (315), Expect = 2e-31
 Identities = 58/369 (15%), Positives = 114/369 (30%), Gaps = 67/369 (18%)

Query: 419 IPASLGNLKNLTKLNLPGNQLNGTLPETLGSLPELSVLDVSSNSLTGIISEIHFSRLSKL 478
           I     N        +  + L   L     S   +  LD+S N L+ I +    +  +KL
Sbjct: 2   IHEIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAAD-LAPFTKL 60

Query: 479 KFLGLSSNSFILNVSSSWIPPFQVQSLNMRSCQLGPSFPSWLKTQQGVSFLDFSNASISG 538
           + L LSSN              +          L                          
Sbjct: 61  ELLNLSSNVL------YETLDLE---------SL-------------------------- 79

Query: 539 PIPNWFWDISSKLSLLNVSLNQLQGQLPNPLNIAPFADVDFRSNLLEGPIPLPI-VEIEL 597
                     S L  L+++ N +Q +L    +I     +   +N +   +        + 
Sbjct: 80  ----------STLRTLDLNNNYVQ-ELLVGPSIE---TLHAANNNISR-VSCSRGQGKKN 124

Query: 598 LDLSNNHFSGPIPQNISGSMPNLIFLSVSGNRLTG-KIPGSIGEMQLLQVIDLSRNSISG 656
           + L+NN  +  +     G    + +L +  N +              L+ ++L  N I  
Sbjct: 125 IYLANNKITM-LRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIY- 182

Query: 657 SISSSIGNCTFLKVLDLSYSSLSGVIPASLGQLTRLQSLHLNNNKLTGNLPSSFQNLTSL 716
            +   +     LK LDLS + L+  +         +  + L NNKL   +  + +   +L
Sbjct: 183 DVKGQV-VFAKLKTLDLSSNKLA-FMGPEFQSAAGVTWISLRNNKLV-LIEKALRFSQNL 239

Query: 717 ETLDLGNNRFSGNIPSLLGNGFVGLRILSLRSNAFSGEIPSKLSNLSSLQVLDLAENNLT 776
           E  DL  N F         +    ++ ++ ++     ++  +     ++  L        
Sbjct: 240 EHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVK---KLTGQNEEECTVPTLGHYGAYCC 296

Query: 777 GSIPGSVGD 785
             +P    D
Sbjct: 297 EDLPAPFAD 305

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score =  112 bits (281), Expect = 5e-27
 Identities = 58/257 (22%), Positives = 97/257 (37%), Gaps = 32/257 (12%)

Query: 657 SISSSIGNCTFLKVLDLSYSSLSGVIPASLGQLTRLQSLHLNNNKLTGNLPSSFQNLTSL 716
           +I     N    K+  ++ SSL   + +       ++ L L+ N L+    +     T L
Sbjct: 1   AIHEIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKL 60

Query: 717 ETLDLGNNRFSGNIPSLLGNGFVGLRILSLRSNAFSGEIPSKLSNLSSLQVLDLAENNLT 776
           E L+L +N        L       LR L L +N        +L    S++ L  A NN++
Sbjct: 61  ELLNLSSNVLY-ETLDL--ESLSTLRTLDLNNNYV-----QELLVGPSIETLHAANNNIS 112

Query: 777 GSIPGSVGDLKAMAHVQNIVKYLLFGRYRGIYYEEN-LVINTKGSSKDTPRLFHFIDLSG 835
             +  S G        Q           + IY   N + +          R+  ++DL  
Sbjct: 113 -RVSCSRG--------QGK---------KNIYLANNKITMLRDLDEGCRSRV-QYLDLKL 153

Query: 836 NNLHG-DFPTQLTKLVGLVVLNLSRNHIGGQIPENISGLHQLASLDLSSNNLSGGIPSSL 894
           N +   +F         L  LNL  N I   +   +    +L +LDLSSN L+  +    
Sbjct: 154 NEIDTVNFAELAASSDTLEHLNLQYNFI-YDVKGQVV-FAKLKTLDLSSNKLA-FMGPEF 210

Query: 895 SSLSFLGYINLSRNQLS 911
            S + + +I+L  N+L 
Sbjct: 211 QSAAGVTWISLRNNKLV 227

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score =  101 bits (253), Expect = 2e-23
 Identities = 44/301 (14%), Positives = 92/301 (30%), Gaps = 34/301 (11%)

Query: 213 SITSITPVNLTSPAVLDLSLNHFNSLFPNWLVNISTLVYVDLSDCDLYGRIPIGFGELPN 272
           +I  I   N     +  ++ +       +   +   +  +DLS   L             
Sbjct: 1   AIHEI-KQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTK 59

Query: 273 LQYLSLAGNNNLSG--SCSQLFRGSWKKIQILNFASNKLHGKLPSSVANMTSLTNFDLFD 330
           L+ L+L  +N L        L       ++ L+  +N +       +    S+      +
Sbjct: 60  LELLNL-SSNVLYETLDLESL-----STLRTLDLNNNYV-----QELLVGPSIETLHAAN 108

Query: 331 KKVEGGIPSSIARLCYLKEFDLSGNNLTGSLPEILQGTDLCVSSNSPLPSLISMRLGNNH 390
             +   +  S  +    K   L+ N +T                      +  + L  N 
Sbjct: 109 NNIS-RVSCSRGQG--KKNIYLANNKITMLRDLDEGC----------RSRVQYLDLKLNE 155

Query: 391 LKG-KLPEWLSQLENLVELTLSYNLLQGPIPASLGNLKNLTKLNLPGNQLNGTLPETLGS 449
           +      E  +  + L  L L YN +   +   +     L  L+L  N+L   +     S
Sbjct: 156 IDTVNFAELAASSDTLEHLNLQYNFIYD-VKGQV-VFAKLKTLDLSSNKLA-FMGPEFQS 212

Query: 450 LPELSVLDVSSNSLTGIISEIHFSRLSKLKFLGLSSNSFILNVSSSWIPPF-QVQSLNMR 508
              ++ + + +N L  I           L+   L  N F       +     +VQ++  +
Sbjct: 213 AAGVTWISLRNNKLVLIEKA--LRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQ 270

Query: 509 S 509
           +
Sbjct: 271 T 271

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 98.1 bits (245), Expect = 2e-22
 Identities = 50/305 (16%), Positives = 108/305 (35%), Gaps = 35/305 (11%)

Query: 96  SLLEYLDLSFNTFNDIPIPEFLGSLENLQYLNLSEAGFTGVVPSSLGNLHRLQYFDVSA- 154
           +  +   ++ ++           S  N++ L+LS    + +  + L    +L+  ++S+ 
Sbjct: 10  NRYKIEKVTDSSLKQAL-ASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSN 68

Query: 155 ELFALSADSLDWLTGLVSLKHLAMNRVDLSLVGSEWLGILKNLPNLTELHLSVCGLTGSI 214
            L+         L  L +L+ L     DL+   + ++  L   P++  LH +      +I
Sbjct: 69  VLYETLD-----LESLSTLRTL-----DLN---NNYVQELLVGPSIETLHAANN----NI 111

Query: 215 TSITPVNLTSPAVLDLSLNHFNSLFPNWLVNISTLVYVDLSDCDLYG-RIPIGFGELPNL 273
           + ++         + L+ N    L        S + Y+DL   ++              L
Sbjct: 112 SRVSCSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTL 171

Query: 274 QYLSLAGNN--NLSGSCSQLFRGSWKKIQILNFASNKLHGKLPSSVANMTSLTNFDLFDK 331
           ++L+L  N   ++ G         + K++ L+ +SNKL   +     +   +T   L + 
Sbjct: 172 EHLNLQYNFIYDVKGQV------VFAKLKTLDLSSNKLA-FMGPEFQSAAGVTWISLRNN 224

Query: 332 KVEGGIPSSIARLCYLKEFDLSGNNLTGSLPEIL-----QGTDLCVSSNSPLPSLISMRL 386
           K+   I  ++     L+ FDL GN               +   +   +   L        
Sbjct: 225 KLV-LIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQNEEEC 283

Query: 387 GNNHL 391
               L
Sbjct: 284 TVPTL 288

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 97.0 bits (242), Expect = 6e-22
 Identities = 53/343 (15%), Positives = 101/343 (29%), Gaps = 58/343 (16%)

Query: 113 IPEFLGSLENLQYLNLSEAGFTGVVPSSLGNLHRLQYFDVSA-ELFALSADSLDWLTGLV 171
           I E   +    +   ++++     + S   +   ++  D+S   L  +SA     L    
Sbjct: 2   IHEIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAAD---LAPFT 58

Query: 172 SLKHLAMNRVDLSLVGSEWLGILKNLPNLTELHLSVCGLTGSITSITPVNLTSPAVLDLS 231
            L+ L ++   L          L++L  L  L L+       +  +      S   L  +
Sbjct: 59  KLELLNLSSNVLYETLD-----LESLSTLRTLDLNNN----YVQELLV--GPSIETLHAA 107

Query: 232 LNHFNSLFPNWLVNISTLVYVDLSDCDLYGRIPIGFGELPNLQYLSLAGNNNLSGSCSQL 291
            N+ + +  +       +    L++  +     +  G    +QYL L   N +       
Sbjct: 108 NNNISRVSCSRGQGKKNI---YLANNKITMLRDLDEGCRSRVQYLDLK-LNEIDTVNFAE 163

Query: 292 FRGSWKKIQILNFASNKLHGKLPSSVANMTSLTNFDLFDKKVEGGIPSSIARLCYLKEFD 351
              S   ++ LN   N +       V                             LK  D
Sbjct: 164 LAASSDTLEHLNLQYNFI-----YDVKGQVVFAK---------------------LKTLD 197

Query: 352 LSGNNLTGSLPEILQGTDLCVSSNSPLPSLISMRLGNNHLKGKLPEWLSQLENLVELTLS 411
           LS N L   +    Q              +  + L NN L   + + L   +NL    L 
Sbjct: 198 LSSNKLA-FMGPEFQS----------AAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLR 245

Query: 412 YNLLQ-GPIPASLGNLKNLTKLNLPGNQLNGTLPETLGSLPEL 453
            N    G +       + +  +     +      E   ++P L
Sbjct: 246 GNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQNEEECTVPTL 288

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 71.2 bits (175), Expect = 3e-13
 Identities = 43/269 (15%), Positives = 84/269 (31%), Gaps = 30/269 (11%)

Query: 98  LEYLDLSFNTFNDIPIPEFLGSLENLQYLNLSEAGFTGVVPSSLGNLHRLQYFDVSAELF 157
           LE L+LS N   +      L SL  L+ L+L+           L     ++    +    
Sbjct: 60  LELLNLSSNVLYETL---DLESLSTLRTLDLNNNYVQ-----ELLVGPSIETLHAANN-- 109

Query: 158 ALSADSLDWLTGLVSLKHLAMNRVDLSLVGSEWLGILKNLPNLTELHLSVCGLTGSITSI 217
            +S  S     G  ++ +LA N+  ++++             +  L L +  +     + 
Sbjct: 110 NISRVSCSRGQGKKNI-YLANNK--ITMLRD---LDEGCRSRVQYLDLKLNEIDTVNFAE 163

Query: 218 TPVNLTSPAVLDLSLNHFNSLFPNWLVNISTLVYVDLSDCDLYGRIPIGFGELPNLQYLS 277
              +  +   L+L  N    +     V  + L  +DLS   L   +   F     + ++S
Sbjct: 164 LAASSDTLEHLNLQYNFIYDVKG--QVVFAKLKTLDLSSNKL-AFMGPEFQSAAGVTWIS 220

Query: 278 LAGNN--NLSGSCSQLFRGSWKKIQILNFASNKLH-GKLPSSVANMTSLTNFDLFDKKVE 334
           L  N    +  +         + ++  +   N  H G L    +    +        K  
Sbjct: 221 LRNNKLVLIEKALRFS-----QNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVK-- 273

Query: 335 GGIPSSIARLCYLKEFDLSGNNLTGSLPE 363
             +       C +      G      LP 
Sbjct: 274 -KLTGQNEEECTVPTLGHYGAYCCEDLPA 301

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 68.9 bits (169), Expect = 1e-12
 Identities = 35/238 (14%), Positives = 72/238 (30%), Gaps = 40/238 (16%)

Query: 93  SSGSLLEYLDLSFNTFNDIPIPEFLGSLENLQYLNLSEAGFTGVVPSSLGNLHRLQYFDV 152
             G  +E L  + N  + +         +  + + L+    T +     G   R+QY D 
Sbjct: 96  LVGPSIETLHAANNNISRVS----CSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLD- 150

Query: 153 SAELFALSADSLDWLTGLVSLKHLAMNRVDLSLVGSEWLGILKNLPNLTELHLSVCGLTG 212
                                  L +N     +    +  +  +   L  L+L       
Sbjct: 151 -----------------------LKLNE----IDTVNFAELAASSDTLEHLNLQYN---- 179

Query: 213 SITSITP-VNLTSPAVLDLSLNHFNSLFPNWLVNISTLVYVDLSDCDLYGRIPIGFGELP 271
            I  +   V       LDLS N    +      + + + ++ L +  L   I        
Sbjct: 180 FIYDVKGQVVFAKLKTLDLSSNKLAFM-GPEFQSAAGVTWISLRNNKL-VLIEKALRFSQ 237

Query: 272 NLQYLSLAGNNNLSGSCSQLFRGSWKKIQILNFASNKLHGKLPSSVANMTSLTNFDLF 329
           NL++  L G N       + F    +++Q +   + K           + +L ++  +
Sbjct: 238 NLEHFDLRG-NGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQNEEECTVPTLGHYGAY 294

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 50.0 bits (120), Expect = 2e-06
 Identities = 15/67 (22%), Positives = 27/67 (40%)

Query: 852 LVVLNLSRNHIGGQIPENISGLHQLASLDLSSNNLSGGIPSSLSSLSFLGYINLSRNQLS 911
             +  ++ + +   +         +  LDLS N LS    + L+  + L  +NLS N L 
Sbjct: 12  YKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLY 71

Query: 912 GKIPFEG 918
             +  E 
Sbjct: 72  ETLDLES 78

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score =  138 bits (350), Expect = 3e-34
 Identities = 60/331 (18%), Positives = 119/331 (35%), Gaps = 32/331 (9%)

Query: 581 SNLLEGPIPLPIVEIELLDLSNNHFSGPIPQNISGSMPNLIFLSVSGNRLTGKIPGSIGE 640
            ++  G   + +   +++   N+     +P  +  S   +  L+++  ++      +   
Sbjct: 39  QDVYFGFEDITLNNQKIVTFKNSTMRK-LPAALLDSFRQVELLNLNDLQIEEIDTYAFAY 97

Query: 641 MQLLQVIDLSRNSISGSISSSIGNCTFLKVLDLSYSSLSGVIPASLGQLTRLQSLHLNNN 700
              +Q + +  N+I         N   L VL L  + LS +         +L +L ++NN
Sbjct: 98  AHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNN 157

Query: 701 KLTGNLPSSFQNLTSLETLDLGNNRFSGNIPSLLGNGFVGLRILSLRSNAFSGEIPSKLS 760
            L      +FQ  TSL+ L L +NR    +  +  +    L   ++  N  S      L+
Sbjct: 158 NLERIEDDTFQATTSLQNLQLSSNR----LTHVDLSLIPSLFHANVSYNLLS-----TLA 208

Query: 761 NLSSLQVLDLAENNLTGSIPGSVGDLKAMAHVQNIVKYLLFGRYRGIYYEENLVINTKGS 820
              +++ LD + N++   + G                  +      +  + N  +     
Sbjct: 209 IPIAVEELDASHNSIN-VVRGP-----------------VNVELTILKLQHNN-LTDTAW 249

Query: 821 SKDTPRLFHFIDLSGNNLHGDFPTQLTKLVGLVVLNLSRNHIGGQIPENISGLHQLASLD 880
             + P L   +DLS N L         K+  L  L +S N +   +      +  L  LD
Sbjct: 250 LLNYPGL-VEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLV-ALNLYGQPIPTLKVLD 307

Query: 881 LSSNNLSGGIPSSLSSLSFLGYINLSRNQLS 911
           LS N+L   +  +      L  + L  N + 
Sbjct: 308 LSHNHLLH-VERNQPQFDRLENLYLDHNSIV 337

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score =  136 bits (344), Expect = 2e-33
 Identities = 77/438 (17%), Positives = 146/438 (33%), Gaps = 77/438 (17%)

Query: 337 IPSSIARLCYLKEFDLSGNNLTGSLPEILQGTDLCVSSNSPLPSLISMRLGNNHLKGKLP 396
           I S++   C   +      ++     ++  G       +  L +   +   N+ ++    
Sbjct: 19  IDSNLQYDCVFYD-----VHIDMQTQDVYFG-----FEDITLNNQKIVTFKNSTMRKLPA 68

Query: 397 EWLSQLENLVELTLSYNLLQGPIPASLGNLKNLTKLNLPGNQLNGTLPETLGSLPELSVL 456
             L     +  L L+   ++     +      + KL +  N +    P    ++P L+VL
Sbjct: 69  ALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVL 128

Query: 457 DVSSNSLTGIISEIHFSRLSKLKFLGLSSNSFILNVSSSWIPPFQVQSLNMRSCQLGPSF 516
            +  N L+ +   I F    KL  L +S+N+         I     Q+            
Sbjct: 129 VLERNDLSSLPRGI-FHNTPKLTTLSMSNNNL------ERIEDDTFQATTS--------- 172

Query: 517 PSWLKTQQGVSFLDFSNASISGPIPNWFWDISSKLSLLNVSLNQLQGQLPNPLNIAPFAD 576
              L+       L  S+  ++    +        L   NVS N L   L  P+       
Sbjct: 173 ---LQN------LQLSSNRLTHVDLSLI----PSLFHANVSYNLLS-TLAIPIA------ 212

Query: 577 VDFRSNLLEGPIPLPIVEIELLDLSNNHFSGPIPQNISGSMPNLIFLSVSGNRLTGKIPG 636
                             +E LD S+N  +  +          L  L +  N LT     
Sbjct: 213 ------------------VEELDASHNSINV-VR---GPVNVELTILKLQHNNLTD--TA 248

Query: 637 SIGEMQLLQVIDLSRNSISGSISSSIGNCTFLKVLDLSYSSLSGVIPASLGQLTRLQSLH 696
            +     L  +DLS N +   +         L+ L +S + L   +      +  L+ L 
Sbjct: 249 WLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLV-ALNLYGQPIPTLKVLD 307

Query: 697 LNNNKLTGNLPSSFQNLTSLETLDLGNNRFSGNIPSLLGNGFVGLRILSLRSNAFSG-EI 755
           L++N L  ++  +      LE L L +N     I +L  +    L+ L+L  N +    +
Sbjct: 308 LSHNHLL-HVERNQPQFDRLENLYLDHNS----IVTLKLSTHHTLKNLTLSHNDWDCNSL 362

Query: 756 PSKLSNLSSLQVLDLAEN 773
            +   N++   V D  ++
Sbjct: 363 RALFRNVARPAVDDADQH 380

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score =  125 bits (316), Expect = 5e-30
 Identities = 93/675 (13%), Positives = 198/675 (29%), Gaps = 116/675 (17%)

Query: 97  LLEYLDLSFNTFNDIPIPEFLGSLENLQYLNLSEAGFTGVVPSSLGNLHRLQYFDVSA-E 155
           +   + +   T +     E + +L N + +    +    +  + L +  +++  +++  +
Sbjct: 28  VFYDVHIDMQTQDVYFGFEDI-TLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQ 86

Query: 156 LFALSADSLDWLTGLVSLKHLAMNRVDLSLVGSEWLGILKNLPNLTELHLSVCGLTGSIT 215
           +  +   +        +++ L M    +  +      + +N+P LT L L    L+ S+ 
Sbjct: 87  IEEIDTYAFA---YAHTIQKLYMGFNAIRYLPP---HVFQNVPLLTVLVLERNDLS-SLP 139

Query: 216 SITPVNLTSPAVLDLSLNHFNSLFPNWLVNISTLVYVDLSDCDLYGRIPIGFGELPNLQY 275
                N      L +S N+   +  +     ++L  + LS   L     +    +P+L +
Sbjct: 140 RGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRL---THVDLSLIPSLFH 196

Query: 276 LSLAGNNNLSGSCSQLFRGSWKKIQILNFASNKLHGKLPSSVANMTSLTNFDLFDKKVEG 335
            +++ N                                 S++A   ++   D     +  
Sbjct: 197 ANVSYNLL-------------------------------STLAIPIAVEELDASHNSIN- 224

Query: 336 GIPSSIARLCYLKEFDLSGNNLTGSLPEILQGTDLCVSSNSPLPSLISMRLGNNHLKGKL 395
            +   +     L    L  NNLT              +     P L+ + L  N L+  +
Sbjct: 225 VVRGPV--NVELTILKLQHNNLTD------------TAWLLNYPGLVEVDLSYNELEKIM 270

Query: 396 PEWLSQLENLVELTLSYNLLQGPIPASLGNLKNLTKLNLPGNQLNGTLPETLGSLPELSV 455
                +++ L  L +S N L   +      +  L  L+L  N L   +         L  
Sbjct: 271 YHPFVKMQRLERLYISNNRLVA-LNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLEN 328

Query: 456 LDVSSNSLTGIISEIHFSRLSKLKFLGLSSNSFILNVSSSWIPPFQVQSL--NMRSCQLG 513
           L +  NS+      +  S    LK L LS N +  N   +        ++    + C++ 
Sbjct: 329 LYLDHNSIV----TLKLSTHHTLKNLTLSHNDWDCNSLRALFRNVARPAVDDADQHCKID 384

Query: 514 PSFPSWLKTQQGVSFLDFSNASISGPIPNWFWDISSKLSLLNVSLNQLQGQLPNPLNIAP 573
                 L  ++                          L+ +   + + QG+      I  
Sbjct: 385 YQLEHGLCCKESDKPY------------LDRLLQYIALTSVVEKVQRAQGRCSATDTI-- 430

Query: 574 FADVDFRSNLLEGPIPLPIVEIELLDLSNNHFSGPIPQNISGSMPNLIFLSVSGNRLTGK 633
              V   S+ +     +P+   E L+   N                          +   
Sbjct: 431 -NSVQSLSHYITQQGGVPLQGNEQLEAEVNELR---------------------AEVQQL 468

Query: 634 IPGSIGEMQLLQVIDLSRNSISGSISSSIGNCTFLKVLDLSYSSLSGVIPASLGQLTRLQ 693
               I + QLLQ +    ++              L+   L    L+          T L+
Sbjct: 469 TNEQIQQEQLLQGLHAEIDTN-------------LRRYRLPKDGLARSSDNLNKVFTHLK 515

Query: 694 SLHLNNNKLTGNLPSSFQN-LTSLETLDLGNNRFSGNIPSLLGNGFVGLRILSLRSNAFS 752
                  + T    +         E L+  N      + +         +  SL+     
Sbjct: 516 ERQAFKLRETQARRTEADAKQKETEDLEQENIALEKQLDNKRAKQAELRQETSLKRQKVK 575

Query: 753 GEIPSKLSNLSSLQV 767
                K  N  + +V
Sbjct: 576 QLEAKKNRNPDTRRV 590

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score =  123 bits (310), Expect = 3e-29
 Identities = 86/541 (15%), Positives = 168/541 (31%), Gaps = 114/541 (21%)

Query: 272 NLQYLSLAGNNNLSGSCSQLFRG----SWKKIQILNFASNKLHGKLPSSVANMTSLTNFD 327
           NLQY  +  + ++      ++ G    +    +I+ F ++ +  KLP             
Sbjct: 22  NLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMR-KLP------------- 67

Query: 328 LFDKKVEGGIPSSIARLCYLKEFDLSGNNLTGSLPEILQGTDLCVSSNSPLPSLISMRLG 387
                      + +     ++  +L+   +                      ++  + +G
Sbjct: 68  ----------AALLDSFRQVELLNLNDLQIEEIDTYAFAY----------AHTIQKLYMG 107

Query: 388 NNHLKGKLPEWLSQLENLVELTLSYNLLQGPIPASLGNLKNLTKLNLPGNQLNGTLPETL 447
            N ++   P     +  L  L L  N L         N   LT L++  N L     +T 
Sbjct: 108 FNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTF 167

Query: 448 GSLPELSVLDVSSNSLTGIISEIHFSRLSKLKFLGLSSNSFILNVSSSWIPPFQVQSLNM 507
            +   L  L +SSN LT     +  S +  L    +S N                     
Sbjct: 168 QATTSLQNLQLSSNRLT----HVDLSLIPSLFHANVSYNLL------------------- 204

Query: 508 RSCQLGPSFPSWLKTQQGVSFLDFSNASISGPIPNWFWDISSKLSLLNVSLNQLQGQLPN 567
                     S L     V  LD S+ SI+            +L++L +  N L      
Sbjct: 205 ----------STLAIPIAVEELDASHNSINVVRGPVN----VELTILKLQHNNLT----- 245

Query: 568 PLNIAPFADVDFRSNLLEGPIPLPIVEIELLDLSNNHFSGPIPQNISGSMPNLIFLSVSG 627
             + A   +      L              +DLS N     I  +    M  L  L +S 
Sbjct: 246 --DTAWLLNY---PGL------------VEVDLSYNELEK-IMYHPFVKMQRLERLYISN 287

Query: 628 NRLTGKIPGSIGEMQLLQVIDLSRNSISGSISSSIGNCTFLKVLDLSYSSLSGVIPASLG 687
           NRL   +      +  L+V+DLS N +   +  +      L+ L L ++S+  +    L 
Sbjct: 288 NRLV-ALNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIVTL---KLS 342

Query: 688 QLTRLQSLHLNNNKLTGNLPSSFQNLTSLETLDLGNNRFSGNIPSLLGNG---------F 738
               L++L L++N    N   +     ++    + +      I   L +G         +
Sbjct: 343 THHTLKNLTLSHNDWDCNSLRAL--FRNVARPAVDDADQHCKIDYQLEHGLCCKESDKPY 400

Query: 739 VGLRILSLRSNAFSGEIPSKLSNLSSLQVLDLAENNLTGSIPGSVGDLKAMAHVQNIVKY 798
           +   +  +   +   ++       S+   ++  ++            L+    ++  V  
Sbjct: 401 LDRLLQYIALTSVVEKVQRAQGRCSATDTINSVQSLSHYITQQGGVPLQGNEQLEAEVNE 460

Query: 799 L 799
           L
Sbjct: 461 L 461

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score =  113 bits (284), Expect = 4e-26
 Identities = 59/298 (19%), Positives = 115/298 (38%), Gaps = 14/298 (4%)

Query: 619 NLIFLSVSGNRLTGKIPGSIGEMQL--LQVIDLSRNSISGSISSSIGNCTFLKVLDLSYS 676
           + +F  V  +  T  +     ++ L   +++    +++    ++ + +   +++L+L+  
Sbjct: 26  DCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDL 85

Query: 677 SLSGVIPASLGQLTRLQSLHLNNNKLTGNLPSSFQNLTSLETLDLGNNRFSGNIPSLLGN 736
            +  +   +      +Q L++  N +    P  FQN+  L  L L  N  S ++P  + +
Sbjct: 86  QIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLS-SLPRGIFH 144

Query: 737 GFVGLRILSLRSNAFSGEIPSK-LSNLSSLQVLDLAENNLTGSIPGSVGDLKAMAHVQNI 795
               L  LS+ +N     I        +SLQ L L+ N LT      +  L       N+
Sbjct: 145 NTPKLTTLSMSNNNLE-RIEDDTFQATTSLQNLQLSSNRLTHVDLSLIPSLFHANVSYNL 203

Query: 796 VKYLLFGRY-RGIYYEENLVINTKGSSKDTPRLFHFIDLSGNNLHGDFPTQLTKLVGLVV 854
           +  L        +    N +            L   + L  NNL       L    GLV 
Sbjct: 204 LSTLAIPIAVEELDASHNSI--NVVRGPVNVEL-TILKLQHNNLTD--TAWLLNYPGLVE 258

Query: 855 LNLSRNHIGGQIPENI-SGLHQLASLDLSSNNLSGGIPSSLSSLSFLGYINLSRNQLS 911
           ++LS N +  +I  +    + +L  L +S+N L   +      +  L  ++LS N L 
Sbjct: 259 VDLSYNEL-EKIMYHPFVKMQRLERLYISNNRLV-ALNLYGQPIPTLKVLDLSHNHLL 314

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 89.2 bits (221), Expect = 2e-18
 Identities = 51/293 (17%), Positives = 99/293 (33%), Gaps = 29/293 (9%)

Query: 649 LSRNSISGSISSSIGNCTFLKVLDLSYSSLSGVIPASLGQLTRLQSLHLNNNKLTGNLPS 708
             R      I S++        + +   +           L   + +   N+ +     +
Sbjct: 10  KPRQPEYKCIDSNLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLPAA 69

Query: 709 SFQNLTSLETLDLGNNRFSGNIPSLLGNGFVGLRILSLRSNAFSGEIPSKLSNLSSLQVL 768
              +   +E L+L + +    I +        ++ L +  NA     P    N+  L VL
Sbjct: 70  LLDSFRQVELLNLNDLQIE-EIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVL 128

Query: 769 DLAENNLTGSIPGSVGDLKAMAHV---QNIVKYLLFGRYRGIYYEENLVIN----TKGSS 821
            L  N+L+    G   +   +  +    N ++ +    ++     +NL ++    T    
Sbjct: 129 VLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVDL 188

Query: 822 KDTPRLFHFIDLSGNNLHGDFPTQLTKLVGLVVLNLSRNHIGGQIPENISGLHQLASLDL 881
              P LFH  ++S N L     + L   + +  L+ S N I   +   +    +L  L L
Sbjct: 189 SLIPSLFH-ANVSYNLL-----STLAIPIAVEELDASHNSI-NVVRGPV--NVELTILKL 239

Query: 882 SSNNLSGGIPSSLSSLSFLGYINLSRNQLSGKIPFEGHMTTFDASSFAGNPGL 934
             NNL+    + L +   L  ++LS N+L                 F     L
Sbjct: 240 QHNNLTD--TAWLLNYPGLVEVDLSYNEL----------EKIMYHPFVKMQRL 280

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score =  135 bits (342), Expect = 5e-34
 Identities = 86/446 (19%), Positives = 150/446 (33%), Gaps = 73/446 (16%)

Query: 337 IPSSIARLCYLKEFDLSGNNLTGSLPEILQGTDLCVSSNSPLPSLISMRLGNNHLKGKLP 396
           +P+ +  +      DLS N++   L E         +S S L  L  +++        + 
Sbjct: 28  LPAHVNYV------DLSLNSIA-ELNE---------TSFSRLQDLQFLKVEQQTPGLVIR 71

Query: 397 EWL-SQLENLVELTLSYNLLQGPIPASLGNLKNLTKLNLPGNQLNGTL--PETLGSLPEL 453
                 L +L+ L L YN        +   L NL  L L    L+G +        L  L
Sbjct: 72  NNTFRGLSSLIILKLDYNQFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSL 131

Query: 454 SVLDVSSNSLTGIISEIHFSRLSKLKFLGLSSNSFILNVSSSW--IPPFQVQSLNMRSCQ 511
            +L +  N++  I     F  + +   L L+ N                    L + S  
Sbjct: 132 EMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSSIT 191

Query: 512 LGPSFPSWLKTQQGVSFLDFSNASISGPIPNWFWDISSKLSLLNVSLNQLQGQLPNPLNI 571
           L                 D +   +        +  +S ++ L++S N  +  +      
Sbjct: 192 L----------------QDMNEYWLGWEKCGNPFKNTS-ITTLDLSGNGFKESMAKRFFD 234

Query: 572 APFADVDFRSNLLEGPIPLPIVEIELLDLSNNHFSG-PIPQNISGSMPNLIFLSVSGNRL 630
           A                 +   +I+ L LSN++  G            N  F  +  + +
Sbjct: 235 A-----------------IAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTFKGLEASGV 277

Query: 631 TGKIPGSIGEMQLLQVIDLSRNSISGSISSSI-GNCTFLKVLDLSYSSLSGVIPASLGQL 689
                            DLS++ I  ++  S+  + T L+ L L+ + ++ +   +   L
Sbjct: 278 K--------------TCDLSKSKIF-ALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGL 322

Query: 690 TRLQSLHLNNNKLTGNLPSSFQNLTSLETLDLGNNRFSGNIPSLLGNGFVGLRILSLRSN 749
           T L  L+L+ N L       F+NL  LE LDL  N     +      G   L+ L+L +N
Sbjct: 323 THLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIR-ALGDQSFLGLPNLKELALDTN 381

Query: 750 AFSGEIPSKLSNLSSLQVLDLAENNL 775
                       L+SLQ + L  N  
Sbjct: 382 QLKSVPDGIFDRLTSLQKIWLHTNPW 407

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score =  128 bits (323), Expect = 2e-31
 Identities = 69/332 (20%), Positives = 121/332 (36%), Gaps = 18/332 (5%)

Query: 595 IELLDLSNNHFSGPIPQNISGSMPNLIFLSVSGNRLTGKIP-GSIGEMQLLQVIDLSRNS 653
           +  +DLS N  +  + +     + +L FL V        I   +   +  L ++ L  N 
Sbjct: 32  VNYVDLSLNSIAE-LNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQ 90

Query: 654 ISGSISSSI-GNCTFLKVLDLSYSSL-SGVIPA-SLGQLTRLQSLHLNNNKLTGNLPSS- 709
               + +        L+VL L+  +L   V+       LT L+ L L +N +    P+S 
Sbjct: 91  FL-QLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASF 149

Query: 710 FQNLTSLETLDLGNNRFS----GNIPSLLGNGFVGLR-----ILSLRSNAFSGEIPSKLS 760
           F N+     LDL  N+       ++ +  G  F  LR     +  +       E      
Sbjct: 150 FLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPF 209

Query: 761 NLSSLQVLDLAENNLTGSIPGSVGDLKAMAHVQNIVKYLLFGRYRGIYYEENLVINTKGS 820
             +S+  LDL+ N    S+     D  A   +Q+++    +       +      +    
Sbjct: 210 KNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTF 269

Query: 821 SKDTPRLFHFIDLSGNNLHGDFPTQLTKLVGLVVLNLSRNHIGGQIPENI-SGLHQLASL 879
                      DLS + +     +  +    L  L L++N I  +I +N   GL  L  L
Sbjct: 270 KGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEIN-KIDDNAFWGLTHLLKL 328

Query: 880 DLSSNNLSGGIPSSLSSLSFLGYINLSRNQLS 911
           +LS N L         +L  L  ++LS N + 
Sbjct: 329 NLSQNFLGSIDSRMFENLDKLEVLDLSYNHIR 360

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score =  112 bits (282), Expect = 3e-26
 Identities = 85/408 (20%), Positives = 153/408 (37%), Gaps = 49/408 (12%)

Query: 98  LEYLDLSFNTFNDIPIPEFLGSLENLQYLNLSEAGFTGVVPS-SLGNLHRLQYFDVSA-E 155
           + Y+DLS N+  ++        L++LQ+L + +     V+ + +   L  L    +   +
Sbjct: 32  VNYVDLSLNSIAELN-ETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQ 90

Query: 156 LFALSADSLDWLTGLVSLKHLAMNRVDLSLVGSEWLGILKNLPNLTELHLSVCGLTGSIT 215
              L   + + L  L  L  L    +D +++        K L +L  L L       +I 
Sbjct: 91  FLQLETGAFNGLANLEVL-TLTQCNLDGAVLSG---NFFKPLTSLEMLVLR----DNNIK 142

Query: 216 SITP----VNLTSPAVLDLSLNHFNSLFPNWLVNISTLV----------YVDLSDCDLYG 261
            I P    +N+    VLDL+ N   S+    L+N                 D+++  L  
Sbjct: 143 KIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGW 202

Query: 262 RIPIGFGELPNLQYLSLAGNNNLSGSCSQLFRGSWKKIQILNFASNKLHGKLPSSVANMT 321
                  +  ++  L L   N    S ++ F  +    +I +   +  +    S      
Sbjct: 203 EKCGNPFKNTSITTLDL-SGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHT-- 259

Query: 322 SLTNFDLFDKKVEGGIPSSIARLCYLKEFDLSGNNLTGSLPEILQGTDLCVSSNSPLPSL 381
              NF   D     G+ +S      +K  DLS + +  +L +         S  S    L
Sbjct: 260 ---NFKDPDNFTFKGLEAS-----GVKTCDLSKSKIF-ALLK---------SVFSHFTDL 301

Query: 382 ISMRLGNNHLKGKLPEW-LSQLENLVELTLSYNLLQGPIPASLGNLKNLTKLNLPGNQLN 440
             + L  N +  K+ +     L +L++L LS N L         NL  L  L+L  N + 
Sbjct: 302 EQLTLAQNEIN-KIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIR 360

Query: 441 GTLPETLGSLPELSVLDVSSNSLTGIISEIHFSRLSKLKFLGLSSNSF 488
               ++   LP L  L + +N L   + +  F RL+ L+ + L +N +
Sbjct: 361 ALGDQSFLGLPNLKELALDTNQLKS-VPDGIFDRLTSLQKIWLHTNPW 407

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score =  102 bits (256), Expect = 5e-23
 Identities = 75/383 (19%), Positives = 129/383 (33%), Gaps = 50/383 (13%)

Query: 122 NLQYLNLSEAGFTGVVPSSLGNLHRLQYFDVSA--ELFALSADSLDWLTGLVSLKHLAMN 179
           ++ Y++LS      +  +S   L  LQ+  V        +  ++   L+ L+ L  L  N
Sbjct: 31  HVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIIL-KLDYN 89

Query: 180 RVDLSLVGSEWLGILKNLPNLTELHLSVCGLTGS-ITSITPVNLTSPAVLDLSLNHFNSL 238
           +     + +   G    L NL  L L+ C L G+ ++      LTS  +L L  N+   +
Sbjct: 90  Q--FLQLET---GAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKI 144

Query: 239 FPNWLVNISTLVYVDLSDCDLYGRIPIGFGELPNLQYLSLAGNNNLSGSCSQLFRG---- 294
            P                          F  +     L L   N +   C +        
Sbjct: 145 QPASF-----------------------FLNMRRFHVLDLT-FNKVKSICEEDLLNFQGK 180

Query: 295 -----SWKKIQILNFASNKLHGKLPSSVANMTSLTNFDLFDKKVEGGIPSSIARLCYLKE 349
                    I + +     L  +   +    TS+T  DL     +  +           +
Sbjct: 181 HFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTK 240

Query: 350 F-----DLSGNNLTGSLPEILQGTDLCVSSNSPLPSLISMRLGNNHLKGKLPEWLSQLEN 404
                   S N  +       +  D           + +  L  + +   L    S   +
Sbjct: 241 IQSLILSNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTD 300

Query: 405 LVELTLSYNLLQGPIPASLGNLKNLTKLNLPGNQLNGTLPE-TLGSLPELSVLDVSSNSL 463
           L +LTL+ N +      +   L +L KLNL  N L G++      +L +L VLD+S N +
Sbjct: 301 LEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFL-GSIDSRMFENLDKLEVLDLSYNHI 359

Query: 464 TGIISEIHFSRLSKLKFLGLSSN 486
             +  +  F  L  LK L L +N
Sbjct: 360 RALGDQS-FLGLPNLKELALDTN 381

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 89.0 bits (221), Expect = 1e-18
 Identities = 76/411 (18%), Positives = 131/411 (31%), Gaps = 89/411 (21%)

Query: 528 FLDFSNASISGPIPNWFWDISSKLSLLNVSLNQLQGQLPNPLNIAPFADVDFRSNLLEGP 587
           FL     +    I N  +   S L +L +  NQ   QL               +    G 
Sbjct: 58  FLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFL-QLE--------------TGAFNG- 101

Query: 588 IPLPIVEIELLDLSNNHF-SGPIPQNISGSMPNLIFLSVSGNRLTGKIPGSI-GEMQLLQ 645
               +  +E+L L+  +     +  N    + +L  L +  N +    P S    M+   
Sbjct: 102 ----LANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFH 157

Query: 646 VIDLSRNSISGSISSSIGNCTFLKV----------LDLSYSSLSGVIPASLGQLTRLQSL 695
           V+DL+ N +       + N                 D++   L      +  + T + +L
Sbjct: 158 VLDLTFNKVKSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTL 217

Query: 696 HLNNNKLTGNLPSSFQNL---TSLETLDLGNNR------FSGNIPSLLGNGFVGL----- 741
            L+ N    ++   F +    T +++L L N+          N        F GL     
Sbjct: 218 DLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTFKGLEASGV 277

Query: 742 RILSLRSNAFSGEIPSKL-SNLSSLQVLDLAENNLTGSIPGSVGDLKAMAHVQNIVKYLL 800
           +   L  +     +   + S+ + L+ L LA+N +   I  +         + +++K   
Sbjct: 278 KTCDLSKSKIF-ALLKSVFSHFTDLEQLTLAQNEIN-KIDDNAFW-----GLTHLLK--- 327

Query: 801 FGRYRGIYYEENLVINTKGSSKDTPRLFHFIDLSGNNLHGDFPTQLTKLVGLVVLNLSRN 860
                                         ++LS N L          L  L VL+LS N
Sbjct: 328 ------------------------------LNLSQNFLGSIDSRMFENLDKLEVLDLSYN 357

Query: 861 HIGGQIPENI-SGLHQLASLDLSSNNLSGGIPSSLSSLSFLGYINLSRNQL 910
           HI   + +    GL  L  L L +N L          L+ L  I L  N  
Sbjct: 358 HIR-ALGDQSFLGLPNLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPW 407

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 86.3 bits (214), Expect = 9e-18
 Identities = 58/329 (17%), Positives = 104/329 (31%), Gaps = 51/329 (15%)

Query: 201 TELHLSVCGLTGSITSITPVNLTSPAVLDLSLNHFNSLFPNWLVNISTLVYVDLSDCDLY 260
                   GL   +  + P ++     +DLSLN    L       +  L ++ +      
Sbjct: 13  YNAICINRGLH-QVPEL-PAHVNY---VDLSLNSIAELNETSFSRLQDLQFLKVEQQTPG 67

Query: 261 GRIPIG-FGELPNLQYLSLAGNNNLSGSCSQLFRGSWKKIQILNFASNKLHG-KLPSSV- 317
             I    F  L +L  L L   N      +  F G    +++L      L G  L  +  
Sbjct: 68  LVIRNNTFRGLSSLIILKL-DYNQFLQLETGAFNGL-ANLEVLTLTQCNLDGAVLSGNFF 125

Query: 318 ANMTSLTNFDLFDKKVEGGIPSSI-ARLCYLKEFDLSGNNLTGSLPEILQG------TDL 370
             +TSL    L D  ++   P+S    +      DL+ N +     E L        T L
Sbjct: 126 KPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLL 185

Query: 371 CVSSNSP------------------LPSLISMRLGNNHLKGKLPEWLSQLENLVEL---- 408
            +SS +                     S+ ++ L  N  K  + +         ++    
Sbjct: 186 RLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLI 245

Query: 409 ---------TLSYNLLQGPIPASLGNLK--NLTKLNLPGNQLNGTLPETLGSLPELSVLD 457
                    +  +   + P   +   L+   +   +L  +++   L        +L  L 
Sbjct: 246 LSNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLT 305

Query: 458 VSSNSLTGIISEIHFSRLSKLKFLGLSSN 486
           ++ N +  I     F  L+ L  L LS N
Sbjct: 306 LAQNEINKIDDNA-FWGLTHLLKLNLSQN 333

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 55.5 bits (134), Expect = 6e-08
 Identities = 43/250 (17%), Positives = 64/250 (25%), Gaps = 76/250 (30%)

Query: 669 KVLDLSYSSLSGV--IPASLGQLTRLQSLHLNNNKLTGNLPSSFQNLTSLETLDLGNNRF 726
                    L  V  +PA +        + L+ N +     +SF  L  L+ L +     
Sbjct: 13  YNAICINRGLHQVPELPAHV------NYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTP 66

Query: 727 SGNIPSLLGNGFVGLRILSLRSNAFSGEIPSKLSNLSSLQVLDLAENNLTGSIPGSVGDL 786
              I +                N F G        LSSL +L L  N     +       
Sbjct: 67  GLVIRN----------------NTFRG--------LSSLIILKLDYNQFL-QLETGA--- 98

Query: 787 KAMAHVQNIVKYLLFGRYRGIYYEENLVINTKGSSKDTPRLFHFIDLSGNNLHGDF--PT 844
                         F                         L     L+  NL G      
Sbjct: 99  --------------FNGL--------------------ANLEVL-TLTQCNLDGAVLSGN 123

Query: 845 QLTKLVGLVVLNLSRNHIGGQIPENI-SGLHQLASLDLSSNNLSGGIPSSLSSL--SFLG 901
               L  L +L L  N+I    P +    + +   LDL+ N +       L +       
Sbjct: 124 FFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFT 183

Query: 902 YINLSRNQLS 911
            + LS   L 
Sbjct: 184 LLRLSSITLQ 193

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 48.6 bits (116), Expect = 7e-06
 Identities = 29/144 (20%), Positives = 55/144 (38%), Gaps = 9/144 (6%)

Query: 94  SGSLLEYLDLSFNTFNDIPIPEFLGSLENLQYLNLSEAGFTGVVPSSLGNLHRLQYFDVS 153
             S ++  DLS +    +          +L+ L L++     +  ++   L  L   ++S
Sbjct: 273 EASGVKTCDLSKSKIFALL-KSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLS 331

Query: 154 A-ELFALSADSLDWLTGLVSLKHLAMNRVDLSLVGSEWLGILKNLPNLTELHLSVCGLTG 212
              L ++ +   + L     L+ L ++   +  +G         LPNL EL L    L  
Sbjct: 332 QNFLGSIDSRMFENLD---KLEVLDLSYNHIRALGD---QSFLGLPNLKELALDTNQLK- 384

Query: 213 SITSITPVNLTSPAVLDLSLNHFN 236
           S+       LTS   + L  N ++
Sbjct: 385 SVPDGIFDRLTSLQKIWLHTNPWD 408

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score =  131 bits (332), Expect = 7e-32
 Identities = 80/430 (18%), Positives = 137/430 (31%), Gaps = 108/430 (25%)

Query: 347 LKEFDLSGNNLTGSLPEILQGTDLCVSSNSPLPSLISMRLGNNHLKGKLPEWLSQLENLV 406
               ++  + LT +LP+ L               + ++ + +N+L   LP    +L  L 
Sbjct: 42  NAVLNVGESGLT-TLPDCL------------PAHITTLVIPDNNLT-SLPALPPELRTL- 86

Query: 407 ELTLSYNLLQGPIPASLGNLKNLTKLNLPGNQLNGTLPETLGSLPELSVLDVSSNSLTGI 466
              +S N L   +P     L  L+  + P   L    P     L     L +  N LT +
Sbjct: 87  --EVSGNQLTS-LPVLPPGLLELSIFSNPLTHL----PALPSGL---CKLWIFGNQLTSL 136

Query: 467 ISEIHFSRLSKLKFLGLSSNSFILNVSSSWIP--PFQVQSLNMRSCQLGPSFPSWLKTQQ 524
                      L+ L +S N        + +P  P ++  L   + QL  S P       
Sbjct: 137 PVLP-----PGLQELSVSDNQL------ASLPALPSELCKLWAYNNQL-TSLPMLP---- 180

Query: 525 GVSFLDFSNASISGPIPNWFWDISSKLSLLNVSLNQLQGQLPNPLNIAPFADVDFRSNLL 584
                                   S L  L+VS NQL                       
Sbjct: 181 ------------------------SGLQELSVSDNQLAS--------------------- 195

Query: 585 EGPIPLPIVEIELLDLSNNHFSGPIPQNISGSMPNLIFLSVSGNRLTGKIPGSIGEMQLL 644
              +P    E+  L   NN  +     ++      L  L VSGNRLT  +P    E   L
Sbjct: 196 ---LPTLPSELYKLWAYNNRLT-----SLPALPSGLKELIVSGNRLTS-LPVLPSE---L 243

Query: 645 QVIDLSRNSISGSISSSIGNCTFLKVLDLSYSSLSGVIPASLGQLTRLQSLHLNNNKLTG 704
           + + +S N ++ S+         L  L +  + L+  +P SL  L+   +++L  N L+ 
Sbjct: 244 KELMVSGNRLT-SLPMLPSG---LLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSE 298

Query: 705 NLPSSFQNLTSLETLDLGNNRFSGNIPSLLGNGFVGLRILSLRSNAFSGEIPSKLSNLSS 764
               + + +TS         RF     S          +    ++        + +    
Sbjct: 299 RTLQALREITSAPGYSGPIIRFDMAGASAPRETR---ALHLAAADWLVPAREGEPAPADR 355

Query: 765 LQVLDLAENN 774
             +    +N 
Sbjct: 356 WHMFGQEDNA 365

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score =  130 bits (327), Expect = 3e-31
 Identities = 69/316 (21%), Positives = 121/316 (38%), Gaps = 61/316 (19%)

Query: 596 ELLDLSNNHFSGPIPQNISGSMPNLIFLSVSGNRLTGKIPGSIGEMQLLQVIDLSRNSIS 655
            +L++  +  +  +P  +     ++  L +  N LT  +P    E   L+ +++S N ++
Sbjct: 43  AVLNVGESGLTT-LPDCLP---AHITTLVIPDNNLT-SLPALPPE---LRTLEVSGNQLT 94

Query: 656 GSISSSIGNCTFLKVLDLSYSSLSGVIPASLGQLTRLQSLHLNNNKLTGNLPSSFQNLTS 715
            S+         L +     + L  +          L  L +  N+LT +LP     L  
Sbjct: 95  -SLPVLPPGLLELSIFSNPLTHLPALPSG-------LCKLWIFGNQLT-SLPVLPPGLQE 145

Query: 716 LETLDLGNNRFSGNIPSLLGNGFVGLRILSLRSNAFSGEIPSKLSNLSSLQVLDLAENNL 775
           L    + +N+ + ++P+L       L  L   +N  +  +P   S L   Q L +++N L
Sbjct: 146 L---SVSDNQLA-SLPALPSE----LCKLWAYNNQLT-SLPMLPSGL---QELSVSDNQL 193

Query: 776 TGSIPGSVGDLKAMAHVQNIVKYLLFGRYRGIYYEENLVINTKGSSKDTPRLFHFIDLSG 835
             S+P    +L  +    N +  L                         P     + +SG
Sbjct: 194 A-SLPTLPSELYKLWAYNNRLTSL----------------------PALPSGLKELIVSG 230

Query: 836 NNLHGDFPTQLTKLVGLVVLNLSRNHIGGQIPENISGLHQLASLDLSSNNLSGGIPSSLS 895
           N L    P   ++L     L +S N +   +P   SGL    SL +  N L+  +P SL 
Sbjct: 231 NRL-TSLPVLPSELK---ELMVSGNRLT-SLPMLPSGLL---SLSVYRNQLTR-LPESLI 281

Query: 896 SLSFLGYINLSRNQLS 911
            LS    +NL  N LS
Sbjct: 282 HLSSETTVNLEGNPLS 297

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score =  122 bits (307), Expect = 8e-29
 Identities = 72/369 (19%), Positives = 132/369 (35%), Gaps = 92/369 (24%)

Query: 426 LKNLTKLNLPGNQLNGTLPETLGSLPELSVLDVSSNSLTGIISEIHFSRLSKLKFLGLSS 485
                 LN+  + L  TLP+ L +   ++ L +  N+LT + +        +L+ L +S 
Sbjct: 39  NNGNAVLNVGESGLT-TLPDCLPA--HITTLVIPDNNLTSLPALP-----PELRTLEVSG 90

Query: 486 NSFILNVSSSWIPPFQVQSLNMRSCQLGPSFPSWLKTQQGVSFLDFSNASISGPIPNWFW 545
           N              Q+ SL        P  P  L                         
Sbjct: 91  N--------------QLTSL--------PVLPPGLL------------------------ 104

Query: 546 DISSKLSLLNVSLNQLQGQLPNPLNIAPFADVDFRSNLLEGPIPLPIVEIELLDLSNNHF 605
               +LS+ +  L  L               +    N L   +P+    ++ L +S+N  
Sbjct: 105 ----ELSIFSNPLTHLPALPSG------LCKLWIFGNQLTS-LPVLPPGLQELSVSDNQL 153

Query: 606 SGPIPQNISGSMPNLIFLSVSGNRLTGKIPGSIGEMQLLQVIDLSRNSISGSISSSIGNC 665
           +     ++      L  L    N+LT  +P        LQ + +S N ++ S+ +     
Sbjct: 154 A-----SLPALPSELCKLWAYNNQLT-SLPMLPSG---LQELSVSDNQLA-SLPTLPSEL 203

Query: 666 TFLKVLDLSYSSLSGVIPASLGQLTRLQSLHLNNNKLTGNLPSSFQNLTSLETLDLGNNR 725
             L   +   +SL    PA    L   + L ++ N+LT +LP      + L+ L +  NR
Sbjct: 204 YKLWAYNNRLTSL----PALPSGL---KELIVSGNRLT-SLPVL---PSELKELMVSGNR 252

Query: 726 FSGNIPSLLGNGFVGLRILSLRSNAFSGEIPSKLSNLSSLQVLDLAENNLTGSIPGSVGD 785
            + ++P L       L  LS+  N  +  +P  L +LSS   ++L  N L+     ++ +
Sbjct: 253 LT-SLPMLPSG----LLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQALRE 306

Query: 786 LKAMAHVQN 794
           + +      
Sbjct: 307 ITSAPGYSG 315

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score =  115 bits (289), Expect = 1e-26
 Identities = 65/338 (19%), Positives = 119/338 (35%), Gaps = 92/338 (27%)

Query: 595 IELLDLSNNHFSGPIPQNISGSMPNLIFLSVSGNRLTGKIPGSIGEMQLLQVIDLSRNSI 654
           I  L + +N+ +     ++    P L  L VSGN+LT  +P     +  L +       +
Sbjct: 63  ITTLVIPDNNLT-----SLPALPPELRTLEVSGNQLT-SLPVLPPGLLELSIFSNPLTHL 116

Query: 655 SGSISSSIGNCTFLKVLDLSYSSLSGVIPASLGQLTRL-----------------QSLHL 697
               S        L  L +  + L+  +P     L  L                   L  
Sbjct: 117 PALPSG-------LCKLWIFGNQLT-SLPVLPPGLQELSVSDNQLASLPALPSELCKLWA 168

Query: 698 NNNKLTGNLPSSFQNLTSLETLDLGNNRFSGNIPSLLGNGFVGLRILSLRSNAFSGEIPS 757
            NN+LT +LP      + L+ L + +N+ + ++P+L       L  L   +N  +  +P+
Sbjct: 169 YNNQLT-SLPML---PSGLQELSVSDNQLA-SLPTLPSE----LYKLWAYNNRLT-SLPA 218

Query: 758 KLSNLSSLQVLDLAENNLTGSIPGSVGDLKAMAHVQNIVKYLLFGRYRGIYYEENLVINT 817
                S L+ L ++ N LT S+P    +LK                              
Sbjct: 219 ---LPSGLKELIVSGNRLT-SLPVLPSELKE----------------------------- 245

Query: 818 KGSSKDTPRLFHFIDLSGNNLHGDFPTQLTKLVGLVVLNLSRNHIGGQIPENISGLHQLA 877
                        + +SGN L    P   +   GL+ L++ RN +  ++PE++  L    
Sbjct: 246 -------------LMVSGNRL-TSLPMLPS---GLLSLSVYRNQLT-RLPESLIHLSSET 287

Query: 878 SLDLSSNNLSGGIPSSLSSLSFLGYINLSRNQLSGKIP 915
           +++L  N LS     +L  ++     +    +      
Sbjct: 288 TVNLEGNPLSERTLQALREITSAPGYSGPIIRFDMAGA 325

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score =  111 bits (280), Expect = 1e-25
 Identities = 56/293 (19%), Positives = 99/293 (33%), Gaps = 79/293 (26%)

Query: 619 NLIFLSVSGNRLTGKIPGSIGEMQLLQVIDLSRNSISGSISSSIGNCTFLKVLDLSYSSL 678
               L+V  + LT  +P  +     +  + +  N+++ S+ +       L+ L++S + L
Sbjct: 41  GNAVLNVGESGLT-TLPDCLP--AHITTLVIPDNNLT-SLPALPPE---LRTLEVSGNQL 93

Query: 679 SGVIPASLGQLTRLQSLHLNNNKLTGNLPSSFQNLTSLETLDLGNNRFSGNIPSLLGNGF 738
           +  +P     L  L         L           + L  L +  N+ + ++P L     
Sbjct: 94  T-SLPVLPPGLLELSIFSNPLTHLP-------ALPSGLCKLWIFGNQLT-SLPVLPPG-- 142

Query: 739 VGLRILSLRSNAFSGEIPSKLSNLSSLQVLDLAENNLTGSIPGSVGDLKAMAHVQNIVKY 798
             L+ LS+  N  +  +P+  S L  L   +   N LT S+P     L+           
Sbjct: 143 --LQELSVSDNQLA-SLPALPSELCKLWAYN---NQLT-SLPMLPSGLQ----------- 184

Query: 799 LLFGRYRGIYYEENLVINTKGSSKDTPRLFHFIDLSGNNLHGDFPTQLTKLVGLVVLNLS 858
                                           + +S N L    PT  ++L  L   N  
Sbjct: 185 -------------------------------ELSVSDNQLA-SLPTLPSELYKLWAYNNR 212

Query: 859 RNHIGGQIPENISGLHQLASLDLSSNNLSGGIPSSLSSLSFLGYINLSRNQLS 911
                  +P   S    L  L +S N L+  +P   S L  L    +S N+L+
Sbjct: 213 LT----SLPALPS---GLKELIVSGNRLT-SLPVLPSELKEL---MVSGNRLT 254

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score =  104 bits (260), Expect = 5e-23
 Identities = 72/371 (19%), Positives = 124/371 (33%), Gaps = 94/371 (25%)

Query: 96  SLLEYLDLSFNTFNDIPIPEFLGSLENLQYLNLSEAGFTGVVPSSLGNLHRLQYFDVSAE 155
           +    L++  +    +P         ++  L + +   T  +P+    L  L        
Sbjct: 40  NGNAVLNVGESGLTTLPD----CLPAHITTLVIPDNNLT-SLPALPPELRTL-------- 86

Query: 156 LFALSADSLDWLTGLVSLKHLAMNRVDLSLVGSEWLGILKNLPNLTELHLSVCGLTGSIT 215
                               ++ N+  L+ +          L  L+     +  L    +
Sbjct: 87  -------------------EVSGNQ--LTSLPVL----PPGLLELSIFSNPLTHLPALPS 121

Query: 216 SITPVNLTSPAVLDLSLNHFNSLFPNWLVNISTLVYVDLSDCDLYGRIPIGFGELPNLQY 275
            +          L +  N   SL P     +  L    +SD  L   +P        L  
Sbjct: 122 GLC--------KLWIFGNQLTSL-PVLPPGLQEL---SVSDNQL-ASLP---ALPSELCK 165

Query: 276 LSLAGNN--NLSGSCSQLFRGSWKKIQILNFASNKLHGKLPSSVANMTSLTNFDLFDKKV 333
           L    N   +L    S L        Q L+ + N+L   LP+  + +  L  ++      
Sbjct: 166 LWAYNNQLTSLPMLPSGL--------QELSVSDNQLA-SLPTLPSELYKLWAYNNRLTS- 215

Query: 334 EGGIPSSIARLCYLKEFDLSGNNLTGSLPEILQGTDLCVSSNSPLPSLISMRLGNNHLKG 393
              +P+  +    LKE  +SGN LT SLP +                L  + +  N L  
Sbjct: 216 ---LPALPSG---LKELIVSGNRLT-SLPVLPS-------------ELKELMVSGNRLT- 254

Query: 394 KLPEWLSQLENLVELTLSYNLLQGPIPASLGNLKNLTKLNLPGNQLNGTLPETLGSLPEL 453
            LP   S    L+ L++  N L   +P SL +L + T +NL GN L+     TL +L E+
Sbjct: 255 SLPMLPS---GLLSLSVYRNQLTR-LPESLIHLSSETTVNLEGNPLS---ERTLQALREI 307

Query: 454 SVLDVSSNSLT 464
           +     S  + 
Sbjct: 308 TSAPGYSGPII 318

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 88.4 bits (219), Expect = 4e-18
 Identities = 60/361 (16%), Positives = 109/361 (30%), Gaps = 49/361 (13%)

Query: 92  DSSGSLLEYLDLSFNTFNDIPIPEFLGSLENLQYLNLSEAGFTGVVPSSLGNLHRLQYFD 151
           D   + +  L +  N    +P          L+ L +S    T  +P     L  L  F 
Sbjct: 57  DCLPAHITTLVIPDNNLTSLP-----ALPPELRTLEVSGNQLT-SLPVLPPGLLELSIFS 110

Query: 152 VSAELFALSADSLDWLTGLVSLKHLAMNRVDLSLVGSEWLGILKN--------LPNLTEL 203
                       L  L     +    +  + +   G + L +  N           L +L
Sbjct: 111 NPLTHLPALPSGLCKLW----IFGNQLTSLPVLPPGLQELSVSDNQLASLPALPSELCKL 166

Query: 204 HLSVCGLTGSITSITPVNLTSPAVLDLSLNHFNSLFPNWLVNISTLVYVDLSDCDLYGRI 263
                 LT      +   L     L +S N   SL        S L  +   +  L   +
Sbjct: 167 WAYNNQLTSLPMLPS--GLQE---LSVSDNQLASLPTL----PSELYKLWAYNNRLT-SL 216

Query: 264 PIGFGELPNLQYLSLAGN--NNLSGSCSQLFRGSWKKIQILNFASNKLHGKLPSSVANMT 321
           P        L+ L ++GN   +L    S+L        + L  + N+L   LP   + + 
Sbjct: 217 P---ALPSGLKELIVSGNRLTSLPVLPSEL--------KELMVSGNRL-TSLPMLPSGLL 264

Query: 322 SLTNFDLFDKKVEGGIPSSIARLCYLKEFDLSGNNLTGSLPEILQGTDLCVSSNSPLPSL 381
           SL    ++  ++   +P S+  L      +L GN L+    + L+        + P   +
Sbjct: 265 SL---SVYRNQLTR-LPESLIHLSSETTVNLEGNPLSERTLQALREITSAPGYSGP---I 317

Query: 382 ISMRLGNNHLKGKLPEWLSQLENLVELTLSYNLLQGPIPASLGNLKNLTKLNLPGNQLNG 441
           I   +       +         + +                 G   N    +L  ++L+ 
Sbjct: 318 IRFDMAGASAPRETRALHLAAADWLVPAREGEPAPADRWHMFGQEDNADAFSLFLDRLSE 377

Query: 442 T 442
           T
Sbjct: 378 T 378

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 80.3 bits (198), Expect = 1e-15
 Identities = 43/223 (19%), Positives = 73/223 (32%), Gaps = 67/223 (30%)

Query: 689 LTRLQSLHLNNNKLTGNLPSSFQNLTSLETLDLGNNRFSGNIPSLLGNGFVGLRILSLRS 748
                 L++  + LT  LP        + TL + +N  + ++P+L       LR L +  
Sbjct: 39  NNGNAVLNVGESGLT-TLPDCL--PAHITTLVIPDNNLT-SLPALPPE----LRTLEVSG 90

Query: 749 NAFSGEIPSKLSNLSSLQVLDLAENNLTGSIPGSVGDLKAMAHVQNIVKYLLFGRYRGIY 808
           N  +  +P     L  L +      +L  ++P  +  L                      
Sbjct: 91  NQLT-SLPVLPPGLLELSIFSNPLTHLP-ALPSGLCKL---------------------- 126

Query: 809 YEENLVINTKGSSKDTPRLFHFIDLSGNNLHGDFPTQLTKLVGLVVLNLSRNHIGGQIPE 868
                                   + GN L    P       GL  L++S N +   +P 
Sbjct: 127 -----------------------WIFGNQLT-SLPVLPP---GLQELSVSDNQLA-SLPA 158

Query: 869 NISGLHQLASLDLSSNNLSGGIPSSLSSLSFLGYINLSRNQLS 911
             S   +L  L   +N L+  +P   S L  L   ++S NQL+
Sbjct: 159 LPS---ELCKLWAYNNQLT-SLPMLPSGLQEL---SVSDNQLA 194

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score =  119 bits (301), Expect = 3e-28
 Identities = 86/468 (18%), Positives = 169/468 (36%), Gaps = 61/468 (13%)

Query: 336 GIPSSIARLCYLKEFDLSGNNLTGSLPEILQGTDLCVSSNSPLPSLISMRLGNNHLKGKL 395
            +P     L       LS N+++      L+  D+     S L  L  +RL +N ++  L
Sbjct: 49  DLPPRTKAL------SLSQNSISE-----LRMPDI-----SFLSELRVLRLSHNRIR-SL 91

Query: 396 PEWL-SQLENLVELTLSYNLLQGPIPASLGNLKNLTKLNLPGNQLNGTLPET--LGSLPE 452
              +    ++L  L +S+N LQ  I      + +L  L+L  N  +  LP     G+L +
Sbjct: 92  DFHVFLFNQDLEYLDVSHNRLQN-ISC--CPMASLRHLDLSFNDFD-VLPVCKEFGNLTK 147

Query: 453 LSVLDVSSNSLTGIISEIHFSRLSKLKFLGLSSNSFILNVSSSWIPPFQVQSLNMRSCQL 512
           L+ L +S+        ++    ++ L    +  +    ++        Q+ +  +     
Sbjct: 148 LTFLGLSAAKFR----QLDLLPVAHLHLSCILLDLVSYHIKGGETESLQIPNTTVLHLVF 203

Query: 513 GPSFPSWLKTQQGVSFLDF-------SNASISGPIPNWFWDISSKLSLLNVSLNQLQGQL 565
            P+    ++    V+ L          N      +  +  +++   +LLNV+L  ++   
Sbjct: 204 HPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTW 263

Query: 566 PNPLNIAPFADVDFRSNLLEGPIPLPIVEIELLDLSNNHFSGPI----PQNISGSMPNLI 621
              + +  F                    +E L++ N   +  I          ++ +L+
Sbjct: 264 KCSVKLFQF---------------FWPRPVEYLNIYNLTITERIDREEFTYSETALKSLM 308

Query: 622 FLSVSGNRLTGKIPGSIGEMQLLQVIDLSRNSISGSISSSIGNCTFLKVLDLSYSSLSGV 681
              V                  + +  LS +           + +    L+ + +  +  
Sbjct: 309 IEHVKNQVFLFSKEALYSVFAEMNIKMLSISDTPFIHMVCPPSPSSFTFLNFTQNVFTDS 368

Query: 682 IPASLGQLTRLQSLHLNNNKLTGNLPSSF---QNLTSLETLDLGNNRFSGNIPSLLGNGF 738
           +      L RLQ+L L  N L  N        +N++SLETLD+  N  + +         
Sbjct: 369 VFQGCSTLKRLQTLILQRNGLK-NFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWA 427

Query: 739 VGLRILSLRSNAFSGEIPSKLSNLSSLQVLDLAENNLTGSIPGSVGDL 786
             + +L+L SN  +G +   L     ++VLDL  N +  SIP  V  L
Sbjct: 428 ESILVLNLSSNMLTGSVFRCLP--PKVKVLDLHNNRIM-SIPKDVTHL 472

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score =  114 bits (287), Expect = 1e-26
 Identities = 94/524 (17%), Positives = 168/524 (32%), Gaps = 76/524 (14%)

Query: 386 LGNNHLKGKLPEWLSQLENLVELTLSYNLLQGPIPASL-GNLKNLTKLNLPGNQLNGTLP 444
           L  N +       +S L  L  L LS+N ++  +   +    ++L  L++  N+L   + 
Sbjct: 59  LSQNSISELRMPDISFLSELRVLRLSHNRIRS-LDFHVFLFNQDLEYLDVSHNRL-QNIS 116

Query: 445 ETLGSLPELSVLDVSSNSLTGIISEIHFSRLSKLKFLGLSSNSFILNVSSSWIPPFQVQS 504
                +  L  LD+S N    +     F  L+KL FLGLS+               + + 
Sbjct: 117 --CCPMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAA--------------KFRQ 160

Query: 505 LNMRSCQLGPSFPSWLKTQQGVSFLDFSNASISGPIPNWFWDISSKLSLLNVSLNQLQGQ 564
           L                       LD  +  I G         ++ +  L    N L   
Sbjct: 161 L---------DLLPVAHLHLSCILLDLVSYHIKGGETESLQIPNTTVLHLVFHPNSL--- 208

Query: 565 LPNPLNIAPFADVDFRSNLLEGPIPLPIVEIELLDLSNNHFSGPIPQNISGSMPNLIFLS 624
                         F   +      L  +++  + L++ +    +   +S        L+
Sbjct: 209 --------------FSVQVNMSVNALGHLQLSNIKLNDENCQR-LMTFLSELTRGPTLLN 253

Query: 625 VSGNRLTGKIPGSIGEMQLLQVIDLSRNSISGSISSSIGNCTFLKVLDLSYSSLSGVIPA 684
           V+   +      S+   Q      +   +I         N T  + +D    + S     
Sbjct: 254 VTLQHIETTWKCSVKLFQFFWPRPVEYLNIY--------NLTITERIDREEFTYS----- 300

Query: 685 SLGQLTRLQSLHLNNNKLTGNLPSSFQNLTSLETLDLGNNRFSGNIPSLLGNGFVGLRIL 744
               L  L   H+ N     +  + +     +    L  +  +  I  +          L
Sbjct: 301 -ETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSISD-TPFIHMVCPPSPSSFTFL 358

Query: 745 SLRSNAFSGEIPSKLSNLSSLQVLDLAENNLTGSIPGSVGDLKAMAHVQNIVKYLLFGRY 804
           +   N F+  +    S L  LQ L L  N L  +        K M+ ++ +   L     
Sbjct: 359 NFTQNVFTDSVFQGCSTLKRLQTLILQRNGLK-NFFKVALMTKNMSSLETLDVSL----- 412

Query: 805 RGIYYEENLVINTKGSSKDTPRLFHFIDLSGNNLHGDFPTQLTKLVGLVVLNLSRNHIGG 864
                  +L  +    +         ++LS N L G     L     + VL+L  N I  
Sbjct: 413 ------NSLNSHAYDRTCAWAESILVLNLSSNMLTGSVFRCLPPK--VKVLDLHNNRIM- 463

Query: 865 QIPENISGLHQLASLDLSSNNLSGGIPSSLSSLSFLGYINLSRN 908
            IP++++ L  L  L+++SN L          L+ L YI L  N
Sbjct: 464 SIPKDVTHLQALQELNVASNQLKSVPDGVFDRLTSLQYIWLHDN 507

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score =  111 bits (279), Expect = 1e-25
 Identities = 94/459 (20%), Positives = 174/459 (37%), Gaps = 41/459 (8%)

Query: 338 PSSIARLCYLKEFDLSGNNLTGSLPEILQGTDLCVSSNSPLPSLISMRLGNNHLKGKLPE 397
              I+ L  L+   LS N +  SL                   L  + + +N L+  +  
Sbjct: 69  MPDISFLSELRVLRLSHNRIR-SLDF---------HVFLFNQDLEYLDVSHNRLQ-NIS- 116

Query: 398 WLSQLENLVELTLSYNLLQG-PIPASLGNLKNLTKLNLPGNQLNGTLPETLGSLPELSV- 455
               + +L  L LS+N     P+    GNL  LT L L   +        +  L    + 
Sbjct: 117 -CCPMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQLDLLPVAHLHLSCIL 175

Query: 456 LDVSSNSLTGIISEIHFSRLSKLKFLGLSSN---SFILNVSSSWIPPFQVQSL--NMRSC 510
           LD+ S  + G  +E      + +  L    N   S  +N+S + +   Q+ ++  N  +C
Sbjct: 176 LDLVSYHIKGGETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENC 235

Query: 511 QLGPSFPSWLKTQQGVSFLDFSNASISGP----IPNWFWDIS-SKLSLLNVSLNQLQGQL 565
           Q   +F S L     +  +   +   +      +  +FW      L++ N+++ +   + 
Sbjct: 236 QRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQFFWPRPVEYLNIYNLTITERIDRE 295

Query: 566 PNPLNIAPFADVDFRSNLLEGPIPLP------IVEIELLDLSNNHFSGPIPQNISGSMPN 619
               +      +       +  +           E+ +  LS +  +  I      S  +
Sbjct: 296 EFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSISD-TPFIHMVCPPSPSS 354

Query: 620 LIFLSVSGNRLTGKIPGSIGEMQLLQVIDLSRNSIS--GSISSSIGNCTFLKVLDLSYSS 677
             FL+ + N  T  +      ++ LQ + L RN +     ++    N + L+ LD+S +S
Sbjct: 355 FTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNS 414

Query: 678 L-SGVIPASLGQLTRLQSLHLNNNKLTGNLPSSFQNLT-SLETLDLGNNRFSGNIPSLLG 735
           L S     +      +  L+L++N LT    S F+ L   ++ LDL NNR   +IP  + 
Sbjct: 415 LNSHAYDRTCAWAESILVLNLSSNMLT---GSVFRCLPPKVKVLDLHNNRIM-SIPKDV- 469

Query: 736 NGFVGLRILSLRSNAFSGEIPSKLSNLSSLQVLDLAENN 774
                L+ L++ SN            L+SLQ + L +N 
Sbjct: 470 THLQALQELNVASNQLKSVPDGVFDRLTSLQYIWLHDNP 508

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score =  103 bits (259), Expect = 5e-23
 Identities = 74/403 (18%), Positives = 149/403 (36%), Gaps = 26/403 (6%)

Query: 98  LEYLDLSFNTFNDIPIPEFLGSLENLQYLNLSEAGFTGVVPSSLGNLHRLQYFDVSAELF 157
           L +LDLSFN F+ +P+ +  G+L  L +L LS A F  +    + +LH            
Sbjct: 123 LRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQLDLLPVAHLHLSCILLDLVSYH 182

Query: 158 ALSADSLDWLTGLVSLKHLAMNRVDLSLVGSEWLGILKNLPNLTELHLS-VCGLTGSITS 216
               ++        ++ HL  +   L  V       +  L +L   ++         + +
Sbjct: 183 IKGGETESLQIPNTTVLHLVFHPNSLFSVQ--VNMSVNALGHLQLSNIKLNDENCQRLMT 240

Query: 217 ITPVNLTSPAVLDLSLNHFNSLFPNW-----LVNISTLVYVDLSDCDLYGRIPIGFGELP 271
                   P +L+++L H  + +              + Y+++ +  +  RI        
Sbjct: 241 FLSELTRGPTLLNVTLQHIETTWKCSVKLFQFFWPRPVEYLNIYNLTITERIDREEFTYS 300

Query: 272 NLQYLSLA----GNNNLSGSCSQLFRGSWKKIQILNFASNKLHGKLPSSVANMTSLTNFD 327
                SL      N     S   L+   + ++ I   + +           + +S T  +
Sbjct: 301 ETALKSLMIEHVKNQVFLFSKEALYS-VFAEMNIKMLSISDTPFIHMVCPPSPSSFTFLN 359

Query: 328 LFDKKVEGGIPSSIARLCYLKEFDLSGNNLTGSLPEILQGTDLCVSSNSPLPSLISMRLG 387
                    +    + L  L+   L  N L  +  ++             + SL ++ + 
Sbjct: 360 FTQNVFTDSVFQGCSTLKRLQTLILQRNGLK-NFFKV-------ALMTKNMSSLETLDVS 411

Query: 388 NNHLKGKLPEWLSQL-ENLVELTLSYNLLQGPIPASLGNLKNLTKLNLPGNQLNGTLPET 446
            N L     +      E+++ L LS N+L G +   L     +  L+L  N++  ++P+ 
Sbjct: 412 LNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVFRCL--PPKVKVLDLHNNRIM-SIPKD 468

Query: 447 LGSLPELSVLDVSSNSLTGIISEIHFSRLSKLKFLGLSSNSFI 489
           +  L  L  L+V+SN L   + +  F RL+ L+++ L  N + 
Sbjct: 469 VTHLQALQELNVASNQLK-SVPDGVFDRLTSLQYIWLHDNPWD 510

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 89.9 bits (223), Expect = 1e-18
 Identities = 81/511 (15%), Positives = 166/511 (32%), Gaps = 75/511 (14%)

Query: 192 GILKNLPNLTELHLSVCGLTGSITSITPVNLTSPAVLDLSLNHFNSLFPNWLVNISTLVY 251
             +  L  L  L LS   +  S+     +       LD+S N   ++    + +   L +
Sbjct: 70  PDISFLSELRVLRLSHNRIR-SLDFHVFLFNQDLEYLDVSHNRLQNISCCPMAS---LRH 125

Query: 252 VDLSDCDLYGRIPIG--FGELPNLQYLSLAGNNNLSGSCSQLFRGSWKKIQILNFASNKL 309
           +DLS  + +  +P+   FG L  L +L L                      +L+  S  +
Sbjct: 126 LDLS-FNDFDVLPVCKEFGNLTKLTFLGL-SAAKFRQLDLLPVAHLHLSCILLDLVSYHI 183

Query: 310 HGKLPSSVANMTSLTNFDLFDKKVEGGIPSSIARLCYLKEFDLSGNNLTGSLPEILQGTD 369
            G    S+    +     +F       +  +++ +  L    LS   L     + L    
Sbjct: 184 KGGETESLQIPNTTVLHLVFHPNSLFSVQVNMS-VNALGHLQLSNIKLNDENCQRLMTFL 242

Query: 370 LCVSSNSPLPSLISMRLGNNHLKGKLPEWLSQLENLVELTLSYNLLQGPIPASLGNLKNL 429
             ++    L ++        H++      +   +      + Y               N+
Sbjct: 243 SELTRGPTLLNVT-----LQHIETTWKCSVKLFQFFWPRPVEYL--------------NI 283

Query: 430 TKLNLPGNQLNGTLPETLGSLPELSVLDVSSNSLTGIISEIHFSRLSKLKFLGLSSNSFI 489
             L +           +  +L  L +  V +         + +S  +++    LS +   
Sbjct: 284 YNLTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEAL-YSVFAEMNIKMLSIS--- 339

Query: 490 LNVSSSWIPPFQVQSLNMRSCQLGPSFPSWLKTQQGVSFLDFSNASISGPIPNWFWDISS 549
                          ++M         P    +     FL+F+    +  +         
Sbjct: 340 -----------DTPFIHM-------VCPPSPSSFT---FLNFTQNVFTDSVFQGC-STLK 377

Query: 550 KLSLLNVSLNQLQGQLPNPLNIAPFADVDFRSNLLEGPIPLPIVEIELLDLSNNHFSGPI 609
           +L  L +  N L+       N    A            +   +  +E LD+S N  +   
Sbjct: 378 RLQTLILQRNGLK-------NFFKVAL-----------MTKNMSSLETLDVSLNSLNSHA 419

Query: 610 PQNISGSMPNLIFLSVSGNRLTGKIPGSIGEMQLLQVIDLSRNSISGSISSSIGNCTFLK 669
                    +++ L++S N LTG +   +     ++V+DL  N I  SI   + +   L+
Sbjct: 420 YDRTCAWAESILVLNLSSNMLTGSVFRCLP--PKVKVLDLHNNRIM-SIPKDVTHLQALQ 476

Query: 670 VLDLSYSSLSGVIPASLGQLTRLQSLHLNNN 700
            L+++ + L  V      +LT LQ + L++N
Sbjct: 477 ELNVASNQLKSVPDGVFDRLTSLQYIWLHDN 507

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 89.2 bits (221), Expect = 2e-18
 Identities = 83/478 (17%), Positives = 148/478 (30%), Gaps = 58/478 (12%)

Query: 98  LEYLDLSFNTFNDIPIPEFLGSLENLQYLNLSEAGFTGVVPSSLGNLHRLQYFDVSA-EL 156
            + L LS N+ +++ +P+    L  L+ L LS      +          L+Y DVS   L
Sbjct: 54  TKALSLSQNSISELRMPDI-SFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNRL 112

Query: 157 FALSADSLDWLTGLVSLKHLAMNRVDLSLVGSEWLGILKNLPNLTELHLSVCGLTGSITS 216
             +S   +       SL+HL ++  D  ++         NL  LT L LS          
Sbjct: 113 QNISCCPMA------SLRHLDLSFNDFDVLPVC--KEFGNLTKLTFLGLS----AAKFRQ 160

Query: 217 ITPVNLTSPAVLDLSLN------HFNSLFPNWLVNISTLVYVDLSDCDLYGRIPIGFGEL 270
           +  + +    +  + L+               + N + L  V   +     ++ +    L
Sbjct: 161 LDLLPVAHLHLSCILLDLVSYHIKGGETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNAL 220

Query: 271 PNLQYLSLAGNNNLSGSCSQLFRGSWKKIQILNFASNKLHGKLPSSVANMTSLTNFDLFD 330
            +LQ  ++  N+              +   +LN     +           T   +  LF 
Sbjct: 221 GHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHI---------ETTWKCSVKLF- 270

Query: 331 KKVEGGIPSSIARLCYLKEFDLSGNNLTGSLPEILQGTDLCVSSNSPLPSLISMRLGNNH 390
                           ++  ++    +T  +       +    S + L SL+   + N  
Sbjct: 271 ---------QFFWPRPVEYLNIYNLTITERIDR-----EEFTYSETALKSLMIEHVKNQV 316

Query: 391 LKGKLPEWLSQLENLVELTLSYNLLQGPIPASLGNLKNLTKLNLPGNQLNGTLPETLGSL 450
                    S    +    LS +           +  + T LN   N    ++ +   +L
Sbjct: 317 FLFSKEALYSVFAEMNIKMLSISDTPFIHMVCPPSPSSFTFLNFTQNVFTDSVFQGCSTL 376

Query: 451 PELSVLDVSSNSLTGIISEIHFSRLSKLKFLGLSSNSF------ILNVSSSWIPPFQVQS 504
             L  L +  N L              +  L     S         + + +W     +  
Sbjct: 377 KRLQTLILQRNGLKNF--FKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAW--AESILV 432

Query: 505 LNMRSCQLGPSFPSWLKTQQGVSFLDFSNASISGPIPNWFWDISSKLSLLNVSLNQLQ 562
           LN+ S  L  S    L  +  V  LD  N  I   IP         L  LNV+ NQL+
Sbjct: 433 LNLSSNMLTGSVFRCLPPK--VKVLDLHNNRIMS-IPKDV-THLQALQELNVASNQLK 486

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 82.6 bits (204), Expect = 2e-16
 Identities = 62/338 (18%), Positives = 118/338 (34%), Gaps = 31/338 (9%)

Query: 598 LDLSNNHFSGPIPQNISGSMPNLIFLSVSGNRLTGKIPGSIGEMQLLQVIDLSRNSISGS 657
           +D SN + +  +P+++    P    LS+S N ++      I  +  L+V+ LS N I   
Sbjct: 36  VDYSNRNLTH-VPKDLP---PRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSL 91

Query: 658 ISSSIGNCTFLKVLDLSYSSLSGVIPASLGQLTRLQSLHLNNNKLTG-NLPSSFQNLTSL 716
                     L+ LD+S++ L  +   S   +  L+ L L+ N      +   F NLT L
Sbjct: 92  DFHVFLFNQDLEYLDVSHNRLQNI---SCCPMASLRHLDLSFNDFDVLPVCKEFGNLTKL 148

Query: 717 ETLDLGNNRFSGNIPSLLGNGFVGLRILSLRSNAFSGEIPSKLSNL-SSLQVLDLAENNL 775
             L L   +F       + +  +   +L L S    G     L    +++  L    N+L
Sbjct: 149 TFLGLSAAKFRQLDLLPVAHLHLSCILLDLVSYHIKGGETESLQIPNTTVLHLVFHPNSL 208

Query: 776 TGSIPGSVGDLKAMAHVQNI---------VKYLLFGRYRGIYYEENLVINTKGSSKDTPR 826
                    +      + NI         +   L    RG       + + + + K + +
Sbjct: 209 FSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVK 268

Query: 827 LFHFI-------------DLSGNNLHGDFPTQLTKLVGLVVLNLSRNHIGGQIPENISGL 873
           LF F               ++      +F    T L  L++ ++             S  
Sbjct: 269 LFQFFWPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVF 328

Query: 874 HQLASLDLSSNNLSGGIPSSLSSLSFLGYINLSRNQLS 911
            ++    LS ++          S S   ++N ++N  +
Sbjct: 329 AEMNIKMLSISDTPFIHMVCPPSPSSFTFLNFTQNVFT 366

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 72.2 bits (177), Expect = 4e-13
 Identities = 48/258 (18%), Positives = 88/258 (34%), Gaps = 24/258 (9%)

Query: 668 LKVLDLSYSSLSGVIPASLGQLTRLQSLHLNNNKLTGNLPSSFQNLTSLETLDLGNNRFS 727
            K L LS +S+S +    +  L+ L+ L L++N++       F     LE LD+ +NR  
Sbjct: 54  TKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNRLQ 113

Query: 728 GNIPSLLGNGFVGLRILSLRSNAF-SGEIPSKLSNLSSLQVLDLAENNLTGSIPGSVGDL 786
               ++       LR L L  N F    +  +  NL+ L  L L+           V  L
Sbjct: 114 ----NISCCPMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQLDLLPVAHL 169

Query: 787 KAMAHVQNIVKYLLFGRYRGIYYEENLVINTKGSSKDTPRLFHFIDLSGNNLHGDFPTQL 846
                + ++V Y + G         N  +             H +    +         +
Sbjct: 170 HLSCILLDLVSYHIKGGETESLQIPNTTVL------------HLVFHPNSLFSVQVNMSV 217

Query: 847 TKLVGLVVLNLSRNHIGGQIPENISGLHQLAS--LDLSSNNLSGGIPSSLSSLSF----- 899
             L  L + N+  N    Q               L+++  ++      S+    F     
Sbjct: 218 NALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQFFWPRP 277

Query: 900 LGYINLSRNQLSGKIPFE 917
           + Y+N+    ++ +I  E
Sbjct: 278 VEYLNIYNLTITERIDRE 295

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 72.2 bits (177), Expect = 4e-13
 Identities = 62/371 (16%), Positives = 121/371 (32%), Gaps = 38/371 (10%)

Query: 549 SKLSLLNVSLNQLQGQLPNPLNIAPFADVDFRSNLLEGPIPLPIVEIELLDLSNNHFSGP 608
           S+L +L +S N+++  L           V F  N           ++E LD+S+N     
Sbjct: 76  SELRVLRLSHNRIR-SLD--------FHV-FLFN----------QDLEYLDVSHNRLQN- 114

Query: 609 IPQNISGSMPNLIFLSVSGNRLTG-KIPGSIGEMQLLQVIDLSRNSI-SGSISSSIGNCT 666
           I       M +L  L +S N      +    G +  L  + LS        +        
Sbjct: 115 IS---CCPMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQLDLLPVAHLHL 171

Query: 667 FLKVLDLSYSSLSGVIPASLGQLTRLQSLHLNNNKLTGNLPSSFQNLTSLETLDLGNNRF 726
              +LDL    + G    SL        LHL  +  +        ++ +L  L L N + 
Sbjct: 172 SCILLDLVSYHIKGGETESLQIPN-TTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKL 230

Query: 727 SGN----IPSLLGNGFVGLRILSLRSNAFSGEIPSKLSNLSSLQVLDLAENNLTGSIPGS 782
           +      + + L     G  +L++            +          +   N+       
Sbjct: 231 NDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQFFWPRPVEYLNIYNLTITE 290

Query: 783 VGDLKAMAHVQNIVKYLLFGRYRGIYYEENLVINTKGSSKDTPRLFHFIDLSGNNLHGDF 842
             D +   + +  +K L+    +       + + +K +        +   LS ++     
Sbjct: 291 RIDREEFTYSETALKSLMIEHVKN-----QVFLFSKEALYSVFAEMNIKMLSISDTPFIH 345

Query: 843 PTQLTKLVGLVVLNLSRNHIGGQIPENISGLHQLASLDLSSNNLS--GGIPSSLSSLSFL 900
                       LN ++N     + +  S L +L +L L  N L     +     ++S L
Sbjct: 346 MVCPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSL 405

Query: 901 GYINLSRNQLS 911
             +++S N L+
Sbjct: 406 ETLDVSLNSLN 416

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score =  118 bits (297), Expect = 3e-28
 Identities = 63/314 (20%), Positives = 109/314 (34%), Gaps = 71/314 (22%)

Query: 598 LDLSNNHFSGPIPQNISGSMPNLIFLSVSGNRLTGKIPGSIGEMQLLQVIDLSRNSISGS 657
           +  +    S  +PQ I     N  +L++  N +      +   +  L+V+ L RNSI   
Sbjct: 59  VVCTRRGLSE-VPQGIP---SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQI 114

Query: 658 ISSSIGNCTFLKVLDLSYSSLSGVIPASLGQLTRLQSLHLNNNKLTGNLPSSFQNLTSLE 717
              +      L  L+L  + L+ +   +   L++L+ L L NN +      +F  + SL 
Sbjct: 115 EVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLM 174

Query: 718 TLDLGNNRFSGNIPSLLGNGFVGLRILSLRSNAFSGEIPSKLSNLSSLQVLDLAENNLTG 777
            LDLG  +                ++  +   AF G        L +L+ L+L   N+  
Sbjct: 175 RLDLGELK----------------KLEYISEGAFEG--------LFNLKYLNLGMCNIK- 209

Query: 778 SIPGSVGDLKAMAHVQNIVKYLLFGRYRGIYYEENLVINTKGSSKDTPRLFHFIDLSGNN 837
            +P                                       +      L   +++SGN+
Sbjct: 210 DMP---------------------------------------NLTPLVGL-EELEMSGNH 229

Query: 838 LHGDFPTQLTKLVGLVVLNLSRNHIGGQIPEN-ISGLHQLASLDLSSNNLSGGIPSSLSS 896
                P     L  L  L +  + +   I  N   GL  L  L+L+ NNLS       + 
Sbjct: 230 FPEIRPGSFHGLSSLKKLWVMNSQV-SLIERNAFDGLASLVELNLAHNNLSSLPHDLFTP 288

Query: 897 LSFLGYINLSRNQL 910
           L +L  ++L  N  
Sbjct: 289 LRYLVELHLHHNPW 302

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score =  109 bits (275), Expect = 2e-25
 Identities = 69/312 (22%), Positives = 114/312 (36%), Gaps = 71/312 (22%)

Query: 626 SGNRLTGKIPGSIGEMQLLQVIDLSRNSISGSISSSIGNCTFLKVLDLSYSSLSGVIPAS 685
           +   L+ ++P  I      + ++L  N+I    + +  +   L+VL L  +S+  +   +
Sbjct: 62  TRRGLS-EVPQGI--PSNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGA 118

Query: 686 LGQLTRLQSLHLNNNKLTGNLPSSFQNLTSLETLDLGNNRFSGNIPSLLGNGFVGLRILS 745
              L  L +L L +N LT     +F+ L+ L  L L NN                    S
Sbjct: 119 FNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWLRNNPIE-----------------S 161

Query: 746 LRSNAFSGEIPSKLSNLSSLQVLDLAENNLTGSIPGSVGDLKAMAHVQNIVKYLLFGRYR 805
           + S AF+         + SL  LDL E      I                          
Sbjct: 162 IPSYAFNR--------VPSLMRLDLGELKKLEYIS------------------------- 188

Query: 806 GIYYEENLVINTKGSSKDTPRLFHFIDLSGNNLHGDFPTQLTKLVGLVVLNLSRNHIGGQ 865
                       +G+ +    L  +++L   N+  D P  LT LVGL  L +S NH    
Sbjct: 189 ------------EGAFEGLFNL-KYLNLGMCNIK-DMPN-LTPLVGLEELEMSGNHFPEI 233

Query: 866 IPENISGLHQLASLDLSSNNLSGGIPSSLSSLSFLGYINLSRNQLSGKIPFE--GHMTTF 923
            P +  GL  L  L + ++ +S    ++   L+ L  +NL+ N LS  +P +    +   
Sbjct: 234 RPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLS-SLPHDLFTPLRYL 292

Query: 924 DASSFAGNPGLC 935
                  NP  C
Sbjct: 293 VELHLHHNPWNC 304

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score =  103 bits (259), Expect = 2e-23
 Identities = 60/292 (20%), Positives = 109/292 (37%), Gaps = 44/292 (15%)

Query: 198 PNLTELHLSVCGLTGSITSITPVNLTSPAVLDLSLNHFNSLFPNWLVNISTLVYVDLSDC 257
              +++  +  GL+  +    P N      L+L  N+   +  +   ++  L  + L   
Sbjct: 54  NQFSKVVCTRRGLS-EVPQGIPSNTR---YLNLMENNIQMIQADTFRHLHHLEVLQLGRN 109

Query: 258 DLYGRIPIG-FGELPNLQYLSLAGNNNLSGSCSQLFRGSWKKIQILNFASNKLHGKLPSS 316
            +  +I +G F  L +L  L L  +N L+   S  F     K++ L   +N +      +
Sbjct: 110 SI-RQIEVGAFNGLASLNTLEL-FDNWLTVIPSGAFEYL-SKLRELWLRNNPIESIPSYA 166

Query: 317 VANMTSLTNFDLFDKKVEGGIPSSIARLCYLKEFDLSGNNLTGSLPEILQGTDLCVSSNS 376
              + SL   DL +                          L        +G         
Sbjct: 167 FNRVPSLMRLDLGE-----------------------LKKLEYISEGAFEG--------- 194

Query: 377 PLPSLISMRLGNNHLKGKLPEWLSQLENLVELTLSYNLLQGPIPASLGNLKNLTKLNLPG 436
            L +L  + LG  ++K  +P  L+ L  L EL +S N      P S   L +L KL +  
Sbjct: 195 -LFNLKYLNLGMCNIK-DMPN-LTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMN 251

Query: 437 NQLNGTLPETLGSLPELSVLDVSSNSLTGIISEIHFSRLSKLKFLGLSSNSF 488
           +Q++         L  L  L+++ N+L+ +  ++ F+ L  L  L L  N +
Sbjct: 252 SQVSLIERNAFDGLASLVELNLAHNNLSSLPHDL-FTPLRYLVELHLHHNPW 302

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 92.5 bits (230), Expect = 8e-20
 Identities = 50/273 (18%), Positives = 80/273 (29%), Gaps = 64/273 (23%)

Query: 192 GILKNLPNLTELHLSVCGLTGSITSITPVNLTSPAVLDLSLNHFNSLFPNWLVNISTLVY 251
              ++L +L  L L    +   I       L S   L+L  N    +       +S L  
Sbjct: 93  DTFRHLHHLEVLQLGRNSIR-QIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRE 151

Query: 252 VDLSDCDLYGRIPIG-FGELPNLQYLSLAGNNNLSGSCSQLFRGSWKKIQILNFASNKLH 310
           + L +  +   IP   F  +P+L  L L     L       F G                
Sbjct: 152 LWLRNNPI-ESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEG---------------- 194

Query: 311 GKLPSSVANMTSLTNFDLFDKKVEGGIPSSIARLCYLKEFDLSGNNLTGSLPEILQGTDL 370
                       L N                     LK  +L   N+   +P +      
Sbjct: 195 ------------LFN---------------------LKYLNLGMCNIK-DMPNL------ 214

Query: 371 CVSSNSPLPSLISMRLGNNHLKGKLPEWLSQLENLVELTLSYNLLQGPIPASLGNLKNLT 430
                +PL  L  + +  NH     P     L +L +L +  + +      +   L +L 
Sbjct: 215 -----TPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLV 269

Query: 431 KLNLPGNQLNGTLPETLGSLPELSVLDVSSNSL 463
           +LNL  N L+    +    L  L  L +  N  
Sbjct: 270 ELNLAHNNLSSLPHDLFTPLRYLVELHLHHNPW 302

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 84.4 bits (209), Expect = 4e-17
 Identities = 56/297 (18%), Positives = 104/297 (35%), Gaps = 51/297 (17%)

Query: 428 NLTKLNLPGNQLNGTLPETLGSLPELSVLDVSSNSLTGIISEIHFSRLSKLKFLGLSSNS 487
             +K+      L+  +P+ +        L++  N++  +I    F  L  L+ L L  NS
Sbjct: 55  QFSKVVCTRRGLS-EVPQGI--PSNTRYLNLMENNIQ-MIQADTFRHLHHLEVLQLGRNS 110

Query: 488 FILNVSSSWIPPFQVQSLNMRSCQLGPSFPSWLKTQQGVSFLDFSNASISGPIPNWFWDI 547
                    I       L            + L T      L+  +  ++      F  +
Sbjct: 111 I------RQIEVGAFNGL------------ASLNT------LELFDNWLTVIPSGAFEYL 146

Query: 548 SSKLSLLNVSLNQLQGQLPNPLNIAPFADVDFRSNLLEGPIPLPIVEIELLDLSNNHFSG 607
           S  L  L +  N ++       +I  +A   F          +P   +  LDL       
Sbjct: 147 SK-LRELWLRNNPIE-------SIPSYA---FN--------RVP--SLMRLDLGELKKLE 185

Query: 608 PIPQNISGSMPNLIFLSVSGNRLTGKIPGSIGEMQLLQVIDLSRNSISGSISSSIGNCTF 667
            I +     + NL +L++    +   +P ++  +  L+ +++S N        S    + 
Sbjct: 186 YISEGAFEGLFNLKYLNLGMCNIK-DMP-NLTPLVGLEELEMSGNHFPEIRPGSFHGLSS 243

Query: 668 LKVLDLSYSSLSGVIPASLGQLTRLQSLHLNNNKLTGNLPSSFQNLTSLETLDLGNN 724
           LK L +  S +S +   +   L  L  L+L +N L+      F  L  L  L L +N
Sbjct: 244 LKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHN 300

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 81.7 bits (202), Expect = 2e-16
 Identities = 44/238 (18%), Positives = 78/238 (32%), Gaps = 20/238 (8%)

Query: 98  LEYLDLSFNTFNDIPIPEFLGSLENLQYLNLSEAGFTGVVPSSLGNLHRLQYFDVSA-EL 156
             YL+L  N    I   +    L +L+ L L       +   +   L  L   ++    L
Sbjct: 77  TRYLNLMENNIQMIQ-ADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWL 135

Query: 157 FALSADSLDWLTGLVSLKHLAMNRVDLSLVGSEWLGILKNLPNLTELHLSVCGLTGSITS 216
             + +        L  L+ L +    +  + S        +P+L  L L        +  
Sbjct: 136 TVIPS---GAFEYLSKLRELWLRNNPIESIPS---YAFNRVPSLMRLDLGEL---KKLEY 186

Query: 217 ITP---VNLTSPAVLDLSLNHFNSLFPNWLVNISTLVYVDLSDCDLYGRIPIG-FGELPN 272
           I+      L +   L+L + +   +    L  +  L  +++S       I  G F  L +
Sbjct: 187 ISEGAFEGLFNLKYLNLGMCNIKDM--PNLTPLVGLEELEMSGNHF-PEIRPGSFHGLSS 243

Query: 273 LQYLSLAGNNNLSGSCSQLFRGSWKKIQILNFASNKLHGKLPSSVANMTSLTNFDLFD 330
           L+ L +  N+ +S      F G    +  LN A N L          +  L    L  
Sbjct: 244 LKKLWVM-NSQVSLIERNAFDGL-ASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHH 299

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 79.0 bits (195), Expect = 2e-15
 Identities = 65/295 (22%), Positives = 106/295 (35%), Gaps = 53/295 (17%)

Query: 98  LEYLDLSFNTFNDIP--IPEFLGSLENLQYLNLSEAGFTGVVPSSLGNLHRLQYFDVSAE 155
              +  +    +++P  IP       N +YLNL E     +   +  +LH L+       
Sbjct: 56  FSKVVCTRRGLSEVPQGIPS------NTRYLNLMENNIQMIQADTFRHLHHLE------V 103

Query: 156 LFALSADSLDWLTGLVSLKHLAMNRVDLSLVGSEWLGILKNLPNLTELHLSVCGLTGSIT 215
           L                   L  N   +  +     G    L +L  L L    LT  I 
Sbjct: 104 L------------------QLGRNS--IRQIEV---GAFNGLASLNTLELFDNWLT-VIP 139

Query: 216 SITPVNLTSPAVLDLSLNHFNSLFPNWLVNISTLVYVDLSDCDLYGRIPIG-FGELPNLQ 274
           S     L+    L L  N   S+       + +L+ +DL +      I  G F  L NL+
Sbjct: 140 SGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLK 199

Query: 275 YLSLAGNNNLSGSCSQLFRGSWKKIQILNFASNKLHGKLPSSVANMTSLTNFDLFDKKVE 334
           YL+L G  N+    +         ++ L  + N      P S   ++SL    + + +V 
Sbjct: 200 YLNL-GMCNIKDMPN--LTPL-VGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVS 255

Query: 335 GGIPSSIARLCYLKEFDLSGNNLTGSLPEILQGTDLCVSSNSPLPSLISMRLGNN 389
               ++   L  L E +L+ NNL+ SLP             +PL  L+ + L +N
Sbjct: 256 LIERNAFDGLASLVELNLAHNNLS-SLPH---------DLFTPLRYLVELHLHHN 300

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 78.6 bits (194), Expect = 3e-15
 Identities = 49/216 (22%), Positives = 88/216 (40%), Gaps = 16/216 (7%)

Query: 98  LEYLDLSFNTFNDIPIPEFLGSLENLQYLNLSEAGFTGVVPSSLGNLHRLQYFDVSA-EL 156
           LE L L  N+   I        L +L  L L +   T +   +   L +L+   +    +
Sbjct: 101 LEVLQLGRNSIRQIE-VGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWLRNNPI 159

Query: 157 FALSADSLDWLTGLVSLKHLAMNRV-DLSLVGSEWLGILKNLPNLTELHLSVCGLTGSIT 215
            ++ +        + SL  L +  +  L  +     G  + L NL  L+L +C +   + 
Sbjct: 160 ESIPSY---AFNRVPSLMRLDLGELKKLEYISE---GAFEGLFNLKYLNLGMCNIK-DMP 212

Query: 216 SITPVNLTSPAVLDLSLNHFNSLFPNWLVNISTLVYVDLSDCDLYGRIPIG-FGELPNLQ 274
           ++T   L     L++S NHF  + P     +S+L  + + +  +   I    F  L +L 
Sbjct: 213 NLT--PLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQV-SLIERNAFDGLASLV 269

Query: 275 YLSLAGNNNLSGSCSQLFRGSWKKIQILNFASNKLH 310
            L+LA +NNLS     LF    + +  L+   N  +
Sbjct: 270 ELNLA-HNNLSSLPHDLFTP-LRYLVELHLHHNPWN 303

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 71.7 bits (176), Expect = 4e-13
 Identities = 52/316 (16%), Positives = 101/316 (31%), Gaps = 71/316 (22%)

Query: 345 CY--LKEFDLSGNNLTGSLPEILQGTDLCVSSNSPLPSLISMRLGNNHLKGKLPEWLSQL 402
           C     +   +   L+  +P+             P  +   + L  N+++    +    L
Sbjct: 52  CSNQFSKVVCTRRGLS-EVPQ-----------GIP-SNTRYLNLMENNIQMIQADTFRHL 98

Query: 403 ENLVELTLSYNLLQGPIPASLGNLKNLTKLNLPGNQLNGTLPETLGSLPELSVLDVSSNS 462
            +L  L L  N ++     +   L +L  L L  N L          L +L  L + +N 
Sbjct: 99  HHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWLRNNP 158

Query: 463 LTGIISEIHFSRLSKLKFLGLSSNSFILNVSSSWIPPFQ----VQSLNMRSCQLGPSFPS 518
           +  I S   F+R+  L  L L     +  +S      F+    ++ LN+  C +      
Sbjct: 159 IESIPSYA-FNRVPSLMRLDLGELKKLEYISEGA---FEGLFNLKYLNLGMCNI------ 208

Query: 519 WLKTQQGVSFLDFSNASISGPIPNWFWDISSKLSLLNVSLNQLQGQLPNPLNIAPFADVD 578
                      + +                  L  L +S N           I P +   
Sbjct: 209 -------KDMPNLTPLV--------------GLEELEMSGNHFP-------EIRPGS--- 237

Query: 579 FRSNLLEGPIPLPIVEIELLDLSNNHFSGPIPQNISGSMPNLIFLSVSGNRLTGKIPGSI 638
           F            +  ++ L + N+  S  I +N    + +L+ L+++ N L+       
Sbjct: 238 FH----------GLSSLKKLWVMNSQVSL-IERNAFDGLASLVELNLAHNNLSSLPHDLF 286

Query: 639 GEMQLLQVIDLSRNSI 654
             ++ L  + L  N  
Sbjct: 287 TPLRYLVELHLHHNPW 302

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score =  113 bits (286), Expect = 1e-27
 Identities = 60/323 (18%), Positives = 114/323 (35%), Gaps = 57/323 (17%)

Query: 596 ELLDLSNNHFSGPIPQNISGSMPNLIFLSVSGNRLTGKIPGSIGEMQLLQVIDLSRNSIS 655
            ++  S+      +P+++    P+   L +  N++T    G    ++ L  + L  N IS
Sbjct: 34  RVVQCSDLGLEK-VPKDLP---PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKIS 89

Query: 656 GSISSSIGNCTFLKVLDLSYSSLSGVIPASLGQLTRLQSLHLNNNKLTGNLPSSFQNLTS 715
                +      L+ L LS + L   +P  +     LQ L ++ N++T    S F  L  
Sbjct: 90  KISPGAFAPLVKLERLYLSKNQLK-ELPEKM--PKTLQELRVHENEITKVRKSVFNGLNQ 146

Query: 716 LETLDLGNNRF-SGNIPSLLGNGFVGLRILSLRSNAFSGEIPSKLSNLSSLQVLDLAENN 774
           +  ++LG N   S  I +    G   L  + +     +  IP  L    SL  L L  N 
Sbjct: 147 MIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNIT-TIPQGL--PPSLTELHLDGNK 203

Query: 775 LTGSIPGSVGDLKAMAHVQNIVKYLLFGRYRGIYYEENLVINTKGSSKDTPRLFHFIDLS 834
           +T  +      LK + ++                                      + LS
Sbjct: 204 IT-KVDA--ASLKGLNNLA------------------------------------KLGLS 224

Query: 835 GNNLHGDFPTQLTKLVGLVVLNLSRNHIGGQIPENISGLHQLASLDLSSNNLSG------ 888
            N++       L     L  L+L+ N +  ++P  ++    +  + L +NN+S       
Sbjct: 225 FNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNISAIGSNDF 283

Query: 889 GIPSSLSSLSFLGYINLSRNQLS 911
             P   +  +    ++L  N + 
Sbjct: 284 CPPGYNTKKASYSGVSLFSNPVQ 306

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score =  105 bits (265), Expect = 8e-25
 Identities = 61/360 (16%), Positives = 123/360 (34%), Gaps = 75/360 (20%)

Query: 380 SLISMRLGNNHLKGKLPEWLSQLENLVELTLSYNLLQGPIPASLGNLKNLTKLNLPGNQL 439
            L  ++  +  L+ K+P+ L    +   L L  N +         NLKNL  L L  N++
Sbjct: 32  HLRVVQCSDLGLE-KVPKDLP--PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKI 88

Query: 440 NGTLPETLGSLPELSVLDVSSNSLTGIISEIHFSRLSKLKFLGLSSNSFILNVSSSWIPP 499
           +   P     L +L  L +S N L     E+       L+ L +  N        + +  
Sbjct: 89  SKISPGAFAPLVKLERLYLSKNQLK----ELPEKMPKTLQELRVHENEI------TKVRK 138

Query: 500 F------QVQSLNMRSCQLGPSFPSWLKTQQGVSFLDFSNASISGPIPNWFWDISSKLSL 553
                  Q+  + + +  L                    ++ I       F  +   LS 
Sbjct: 139 SVFNGLNQMIVVELGTNPL-------------------KSSGIE---NGAFQGMKK-LSY 175

Query: 554 LNVSLNQLQGQLPNPLNIAPFADVDFRSNLLEGPIPLPIVEIELLDLSNNHFSGPIPQNI 613
           + ++   +   +P  L           S             +  L L  N  +  +    
Sbjct: 176 IRIADTNIT-TIPQGL---------PPS-------------LTELHLDGNKITK-VDAAS 211

Query: 614 SGSMPNLIFLSVSGNRLTGKIPGSIGEMQLLQVIDLSRNSISGSISSSIGNCTFLKVLDL 673
              + NL  L +S N ++    GS+     L+ + L+ N +   +   + +  +++V+ L
Sbjct: 212 LKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYL 270

Query: 674 SYSSLSGV------IPASLGQLTRLQSLHLNNNKLTGNL--PSSFQNLTSLETLDLGNNR 725
             +++S +       P    +      + L +N +      PS+F+ +     + LGN +
Sbjct: 271 HNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQLGNYK 330

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score =  105 bits (265), Expect = 8e-25
 Identities = 57/270 (21%), Positives = 100/270 (37%), Gaps = 28/270 (10%)

Query: 644 LQVIDLSRNSISGSISSSIGNCTFLKVLDLSYSSLSGVIPASLGQLTRLQSLHLNNNKLT 703
           L+V+  S   +   +   +       +LDL  + ++ +       L  L +L L NNK++
Sbjct: 33  LRVVQCSDLGLE-KVPKDLP--PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKIS 89

Query: 704 GNLPSSFQNLTSLETLDLGNNRFSGNIPSLLGNGFVGLRILSLRSNAFSGEIPSK-LSNL 762
              P +F  L  LE L L  N+    +P  +      L+ L +  N  + ++     + L
Sbjct: 90  KISPGAFAPLVKLERLYLSKNQLK-ELPEKM---PKTLQELRVHENEIT-KVRKSVFNGL 144

Query: 763 SSLQVLDLAENNLTGSIPGSVGDLKAMAHVQNIVKYLLFGRYRGIYYEENLVINTKGSSK 822
           + + V++L  N L  S     G  + M  +  I   +       I              +
Sbjct: 145 NQMIVVELGTNPLK-SSGIENGAFQGMKKLSYI--RIADTNITTI-------------PQ 188

Query: 823 DTPRLFHFIDLSGNNLHGDFPTQLTKLVGLVVLNLSRNHIGGQIPENI-SGLHQLASLDL 881
             P     + L GN +       L  L  L  L LS N I   +     +    L  L L
Sbjct: 189 GLPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSI-SAVDNGSLANTPHLRELHL 247

Query: 882 SSNNLSGGIPSSLSSLSFLGYINLSRNQLS 911
           ++N L   +P  L+   ++  + L  N +S
Sbjct: 248 NNNKLV-KVPGGLADHKYIQVVYLHNNNIS 276

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score =  100 bits (252), Expect = 4e-23
 Identities = 56/308 (18%), Positives = 103/308 (33%), Gaps = 30/308 (9%)

Query: 199 NLTELHLSVCGLTGSITSITPVNLTSPAVLDLSLNHFNSLFPNWLVNISTLVYVDLSDCD 258
           +L  +  S  GL   +    P +      LDL  N    +      N+  L  + L +  
Sbjct: 32  HLRVVQCSDLGLE-KVPKDLPPDTAL---LDLQNNKITEIKDGDFKNLKNLHTLILINNK 87

Query: 259 LYGRIPIGFGELPNLQYLSLAGNNNLSGSCSQLFRGSWKKIQILNFASNKLHGKLPSSVA 318
           +    P  F  L  L+ L L+  N L     ++ +     +Q L    N++     S   
Sbjct: 88  ISKISPGAFAPLVKLERLYLS-KNQLKELPEKMPKT----LQELRVHENEITKVRKSVFN 142

Query: 319 NMTSLTNFDLFDKKV-EGGIPSSI-ARLCYLKEFDLSGNNLTGSLPEILQG-TDLCVSSN 375
            +  +   +L    +   GI +     +  L    ++  N+T     +    T+L +  N
Sbjct: 143 GLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQGLPPSLTELHLDGN 202

Query: 376 ----------SPLPSLISMRLGNNHLKGKLPEWLSQLENLVELTLSYNLLQGPIPASLGN 425
                       L +L  + L  N +       L+   +L EL L+ N L   +P  L +
Sbjct: 203 KITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVK-VPGGLAD 261

Query: 426 LKNLTKLNLPGNQLNG------TLPETLGSLPELSVLDVSSNSLTGI-ISEIHFSRLSKL 478
            K +  + L  N ++         P         S + + SN +    I    F  +   
Sbjct: 262 HKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVR 321

Query: 479 KFLGLSSN 486
             + L + 
Sbjct: 322 AAVQLGNY 329

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 95.8 bits (239), Expect = 2e-21
 Identities = 60/300 (20%), Positives = 107/300 (35%), Gaps = 60/300 (20%)

Query: 596 ELLDLSNNHFSGPIPQNISGSMPNLIFLSVSGNRLTGKIPGSIGEMQLLQVIDLSRNSIS 655
             L L NN  S  I       +  L  L +S N+L  ++P  +   + LQ + +  N I+
Sbjct: 79  HTLILINNKISK-ISPGAFAPLVKLERLYLSKNQLK-ELPEKM--PKTLQELRVHENEIT 134

Query: 656 GSISSSI-GNCTFLKVLDLSYSSL--SGVIPASLGQLTRLQSLHLNNNKLTGNLPSSFQN 712
             +  S+      + V++L  + L  SG+   +   + +L  + + +  +T  +P     
Sbjct: 135 -KVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNIT-TIPQGL-- 190

Query: 713 LTSLETLDLGNNRFSGNIPSLLGNGFVGLRILSLRSNAFSGEIPSKLSNLSSLQVLDLAE 772
             SL  L L  N+ +  + +    G   L  L L  N+ S      L+N   L+ L L  
Sbjct: 191 PPSLTELHLDGNKIT-KVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNN 249

Query: 773 NNLTGSIPGSVGDLKAMAHVQNIVKYLLFGRYRGIYYEENLVINTKGSSKDTPRLFHFID 832
           N L   +PG + D K +                                         + 
Sbjct: 250 NKLV-KVPGGLADHKYI---------------------------------------QVVY 269

Query: 833 LSGNNLH----GDF--PTQLTKLVGLVVLNLSRNHIG-GQIPENI-SGLHQLASLDLSSN 884
           L  NN+      DF  P   TK      ++L  N +   +I  +    ++  A++ L + 
Sbjct: 270 LHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQLGNY 329

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 95.5 bits (238), Expect = 2e-21
 Identities = 70/337 (20%), Positives = 117/337 (34%), Gaps = 73/337 (21%)

Query: 451 PELSVLDVSSNSLTGIISEIHFSRLSKLKFLGLSSNSFILNVSSSWIPP------FQVQS 504
           P+ ++LD+ +N +T  I +  F  L  L  L L +N        S I P       +++ 
Sbjct: 52  PDTALLDLQNNKIT-EIKDGDFKNLKNLHTLILINNKI------SKISPGAFAPLVKLER 104

Query: 505 LNMRSCQLGPSFPSWLKTQQGVSFLDFSNASISGPIPNWFWDISSKLSLLNVSLNQLQGQ 564
           L +   QL                       +   +P         L  L V  N++   
Sbjct: 105 LYLSKNQL---------------------KELPEKMP-------KTLQELRVHENEIT-- 134

Query: 565 LPNPLNIAPFADVDFRSNLLEGPIPLPIVEIELLDLSNNHF-SGPIPQNISGSMPNLIFL 623
                          R ++  G     + ++ +++L  N   S  I       M  L ++
Sbjct: 135 -------------KVRKSVFNG-----LNQMIVVELGTNPLKSSGIENGAFQGMKKLSYI 176

Query: 624 SVSGNRLTGKIPGSIGEMQLLQVIDLSRNSISGSISSSIGNCTFLKVLDLSYSSLSGVIP 683
            ++   +T  IP  +     L  + L  N I+   ++S+     L  L LS++S+S V  
Sbjct: 177 RIADTNIT-TIPQGL--PPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDN 233

Query: 684 ASLGQLTRLQSLHLNNNKLTGNLPSSFQNLTSLETLDLGNNRFS-----GNIPSLLGNGF 738
            SL     L+ LHLNNNKL   +P    +   ++ + L NN  S        P       
Sbjct: 234 GSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKK 292

Query: 739 VGLRILSLRSNAFS-GEIPSKL-SNLSSLQVLDLAEN 773
                +SL SN     EI       +     + L   
Sbjct: 293 ASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQLGNY 329

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 84.7 bits (210), Expect = 1e-17
 Identities = 51/321 (15%), Positives = 102/321 (31%), Gaps = 50/321 (15%)

Query: 98  LEYLDLSFNTFNDIPIPEFLGSLENLQYLNLSEAGFTGVVPSSLGNLHRLQYFDVSA-EL 156
              LDL  N   +I   +F   L+NL  L L     + + P +   L +L+   +S  +L
Sbjct: 54  TALLDLQNNKITEIKDGDFKN-LKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQL 112

Query: 157 FALSADSLDWLTGLVSLKHLAMNRVDLSLVGSEWLGILKNLPNLTELHLSVCGLT-GSIT 215
             L       L  L     +  N   ++ V      +   L  +  + L    L    I 
Sbjct: 113 KELPEKMPKTLQEL----RVHENE--ITKVRK---SVFNGLNQMIVVELGTNPLKSSGIE 163

Query: 216 SITPVNLTSPAVLDLSLNHFNSLFPNWLVNISTLVYVDLSDCDLYGRIPIG-FGELPNLQ 274
           +     +   + + ++  +  ++      +++ L    L    +  ++       L NL 
Sbjct: 164 NGAFQGMKKLSYIRIADTNITTIPQGLPPSLTEL---HLDGNKI-TKVDAASLKGLNNLA 219

Query: 275 YLSLAGNNNLSGSCSQLFRGSWKKIQILNFASNKLHGKLPSSVANMTSLTNFDLFDKKVE 334
            L L   N++S   +         ++ L+  +NKL                         
Sbjct: 220 KLGL-SFNSISAVDNGSLAN-TPHLRELHLNNNKLV------------------------ 253

Query: 335 GGIPSSIARLCYLKEFDLSGNNLTGSLPEILQGTDLCVSSNSPLPSLISMRLGNNHLKGK 394
             +P  +A   Y++   L  NN++     I          N+   S   + L +N ++  
Sbjct: 254 -KVPGGLADHKYIQVVYLHNNNIS----AIGSNDFCPPGYNTKKASYSGVSLFSNPVQYW 308

Query: 395 L--PEWLSQLENLVELTLSYN 413
              P     +     + L   
Sbjct: 309 EIQPSTFRCVYVRAAVQLGNY 329

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 71.6 bits (176), Expect = 2e-13
 Identities = 55/277 (19%), Positives = 92/277 (33%), Gaps = 92/277 (33%)

Query: 664 NCT-FLKVLDLSYSSLSGVIPASLGQLTRLQSLHLNNNKLTGNLPSSFQNLTSLETLDLG 722
            C   L+V+  S   L   +P  L        L L NNK+T      F+NL +L TL L 
Sbjct: 28  RCQCHLRVVQCSDLGLE-KVPKDLP--PDTALLDLQNNKITEIKDGDFKNLKNLHTLILI 84

Query: 723 NNRFSGNIPSLLGNGFVGLRILSLRSNAFSGEIPSKLSNLSSLQVLDLAENNLTGSIPGS 782
           NN+ S                  +   AF+         L  L+ L L++N L   +P  
Sbjct: 85  NNKIS-----------------KISPGAFAP--------LVKLERLYLSKNQLK-ELPEK 118

Query: 783 VGDLKAMAHVQNIVKYLLFGRYRGIYYEENLVINTKGSSKDTPRLFHFIDLSGNNLHGDF 842
                            +          + L                 + +  N +    
Sbjct: 119 -----------------MP---------KTLQE---------------LRVHENEITKVR 137

Query: 843 PTQLTKLVGLVVLNLSRNHIG-GQIPENI-SGLHQLASLDLSSNNLSG---GIPSSLSSL 897
            +    L  ++V+ L  N +    I      G+ +L+ + ++  N++    G+P SL+ L
Sbjct: 138 KSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQGLPPSLTEL 197

Query: 898 SFLGYINLSRNQLSGKIPFEGHMTTFDASSFAGNPGL 934
                 +L  N++          T  DA+S  G   L
Sbjct: 198 ------HLDGNKI----------TKVDAASLKGLNNL 218

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score =  116 bits (291), Expect = 2e-27
 Identities = 68/287 (23%), Positives = 107/287 (37%), Gaps = 48/287 (16%)

Query: 626 SGNRLTGKIPGSIGEMQLLQVIDLSRNSISGSISSSIGNCTFLKVLDLSYSSLSGVIPAS 685
               L  ++P  I      ++++L  N I     +S  +   L++L LS + +  +   +
Sbjct: 51  VRKNLR-EVPDGIST--NTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGA 107

Query: 686 LGQLTRLQSLHLNNNKLTGNLPSSFQNLTSLETLDLGNNRFSGNIPSLLGNGFVGLRILS 745
              L  L +L L +N+LT     +F  L+ L+ L L NN    +IPS   N    LR L 
Sbjct: 108 FNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWLRNNPIE-SIPSYAFNRIPSLRRLD 166

Query: 746 LRSNAFSGEIPSK-LSNLSSLQVLDLAENNLTGSIPGSVGDLKAMAHVQNIVKYLLFGRY 804
           L        I       LS+L+ L+LA  NL   IP        +  +  +         
Sbjct: 167 LGELKRLSYISEGAFEGLSNLRYLNLAMCNLR-EIP-------NLTPLIKL--------- 209

Query: 805 RGIYYEENLVINTKGSSKDTPRLFHFIDLSGNNLHGDFPTQLTKLVGLVVLNLSRNHIGG 864
                                     +DLSGN+L    P     L+ L  L + ++ I  
Sbjct: 210 ------------------------DELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQI-Q 244

Query: 865 QIPEN-ISGLHQLASLDLSSNNLSGGIPSSLSSLSFLGYINLSRNQL 910
            I  N    L  L  ++L+ NNL+       + L  L  I+L  N  
Sbjct: 245 VIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHNPW 291

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 96.0 bits (239), Expect = 7e-21
 Identities = 60/269 (22%), Positives = 101/269 (37%), Gaps = 23/269 (8%)

Query: 198 PNLTELHLSVCGLTGSITSITPVNLTSPAVLDLSLNHFNSLFPNWLVNISTLVYVDLSDC 257
              +++      L   +      N     +L+L  N    +  N   ++  L  + LS  
Sbjct: 43  NQFSKVICVRKNLR-EVPDGISTNTR---LLNLHENQIQIIKVNSFKHLRHLEILQLSRN 98

Query: 258 DLYGRIPIG-FGELPNLQYLSLAGNNNLSGSCSQLFRGSWKKIQILNFASNKLHGKLPSS 316
            +   I IG F  L NL  L L  +N L+   +  F     K++ L   +N +   +PS 
Sbjct: 99  HI-RTIEIGAFNGLANLNTLELF-DNRLTTIPNGAFVYL-SKLKELWLRNNPIE-SIPSY 154

Query: 317 V-ANMTSLTNFDLFDKKVEGGIPSSI-ARLCYLKEFDLSGNNLTGSLPEILQGTDLCVSS 374
               + SL   DL + K    I       L  L+  +L+  NL   +P +          
Sbjct: 155 AFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLR-EIPNL---------- 203

Query: 375 NSPLPSLISMRLGNNHLKGKLPEWLSQLENLVELTLSYNLLQGPIPASLGNLKNLTKLNL 434
            +PL  L  + L  NHL    P     L +L +L +  + +Q     +  NL++L ++NL
Sbjct: 204 -TPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINL 262

Query: 435 PGNQLNGTLPETLGSLPELSVLDVSSNSL 463
             N L     +    L  L  + +  N  
Sbjct: 263 AHNNLTLLPHDLFTPLHHLERIHLHHNPW 291

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 91.3 bits (227), Expect = 2e-19
 Identities = 59/297 (19%), Positives = 100/297 (33%), Gaps = 72/297 (24%)

Query: 428 NLTKLNLPGNQLNGTLPETLGSLPELSVLDVSSNSLTGIISEIHFSRLSKLKFLGLSSNS 487
           N   LNL  NQ+      +   L  L +L +S N +   I    F+ L+ L  L L  N 
Sbjct: 65  NTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIR-TIEIGAFNGLANLNTLELFDN- 122

Query: 488 FILNVSSSWIPPFQVQSLNMRSCQLGPSFPSWLKTQQGVSFLDFSNASISGPIPNWFWDI 547
                        ++ ++                                      F  +
Sbjct: 123 -------------RLTTIP----------------------------------NGAFVYL 135

Query: 548 SSKLSLLNVSLNQLQGQLPNPLNIAPFADVDFRSNLLEGPIPLPIVEIELLDLSNNHFSG 607
           S  L  L +  N ++       +I  +A   F          +P   +  LDL       
Sbjct: 136 SK-LKELWLRNNPIE-------SIPSYA---FN--------RIP--SLRRLDLGELKRLS 174

Query: 608 PIPQNISGSMPNLIFLSVSGNRLTGKIPGSIGEMQLLQVIDLSRNSISGSISSSIGNCTF 667
            I +     + NL +L+++   L  +IP ++  +  L  +DLS N +S     S      
Sbjct: 175 YISEGAFEGLSNLRYLNLAMCNLR-EIP-NLTPLIKLDELDLSGNHLSAIRPGSFQGLMH 232

Query: 668 LKVLDLSYSSLSGVIPASLGQLTRLQSLHLNNNKLTGNLPSSFQNLTSLETLDLGNN 724
           L+ L +  S +  +   +   L  L  ++L +N LT      F  L  LE + L +N
Sbjct: 233 LQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHN 289

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 89.8 bits (223), Expect = 6e-19
 Identities = 57/250 (22%), Positives = 91/250 (36%), Gaps = 40/250 (16%)

Query: 192 GILKNLPNLTELHLSVCGLTGSITSITPVNLTSPAVLDLSLNHFNSLFPNWLVNISTLVY 251
              K+L +L  L LS   +  +I       L +   L+L  N   ++     V +S L  
Sbjct: 82  NSFKHLRHLEILQLSRNHIR-TIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKE 140

Query: 252 VDLSDCDLYGRIPIG-FGELPNLQYLSLAGNNNLSGSCSQLFRGSWKKIQILNFASNKLH 310
           + L +  +   IP   F  +P+L+ L L     LS      F G    ++ LN A   L 
Sbjct: 141 LWLRNNPI-ESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGL-SNLRYLNLAMCNL- 197

Query: 311 GKLPSSVANMTSLTNFDLFDKKVEGGIPSSIARLCYLKEFDLSGNNLTGSLPEILQGTDL 370
                       + N                  L  L E DLSGN+L+   P   QG   
Sbjct: 198 ----------REIPNL---------------TPLIKLDELDLSGNHLSAIRPGSFQG--- 229

Query: 371 CVSSNSPLPSLISMRLGNNHLKGKLPEWLSQLENLVELTLSYNLLQGPIPASLGNLKNLT 430
                  L  L  + +  + ++         L++LVE+ L++N L          L +L 
Sbjct: 230 -------LMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLE 282

Query: 431 KLNLPGNQLN 440
           +++L  N  N
Sbjct: 283 RIHLHHNPWN 292

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 89.0 bits (221), Expect = 1e-18
 Identities = 55/258 (21%), Positives = 99/258 (38%), Gaps = 27/258 (10%)

Query: 495 SWIPPFQVQSLNMRSCQLGPSFPSWLKTQQGVSFLDFSNASISGPIPNWFWDISSKLSLL 554
             I     + LN+   Q+     +  K  + +  L  S   I       F  +++ L+ L
Sbjct: 60  DGIST-NTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLAN-LNTL 117

Query: 555 NVSLNQLQGQLPNPLNIAPFADVDFRSNLLEGPIPLPIVEIELLDLSNNHFSGPIPQNIS 614
            +  N+L   +P              +        L     + L L NN     IP    
Sbjct: 118 ELFDNRLT-TIP--------------NGAFVYLSKL-----KELWLRNNPIES-IPSYAF 156

Query: 615 GSMPNLIFLSVSG-NRLTGKIPGSIGEMQLLQVIDLSRNSISGSISSSIGNCTFLKVLDL 673
             +P+L  L +    RL+    G+   +  L+ ++L+  ++   I + +     L  LDL
Sbjct: 157 NRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLR-EIPN-LTPLIKLDELDL 214

Query: 674 SYSSLSGVIPASLGQLTRLQSLHLNNNKLTGNLPSSFQNLTSLETLDLGNNRFSGNIPSL 733
           S + LS + P S   L  LQ L +  +++     ++F NL SL  ++L +N  +  +P  
Sbjct: 215 SGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLT-LLPHD 273

Query: 734 LGNGFVGLRILSLRSNAF 751
           L      L  + L  N +
Sbjct: 274 LFTPLHHLERIHLHHNPW 291

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 82.1 bits (203), Expect = 2e-16
 Identities = 52/254 (20%), Positives = 97/254 (38%), Gaps = 32/254 (12%)

Query: 379 PSLISMRLGNNHLKGKLPEWLSQLENLVELTLSYNLLQGPIPASLGNLKNLTKLNLPGNQ 438
            +   + L  N ++         L +L  L LS N ++     +   L NL  L L  N+
Sbjct: 64  TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNR 123

Query: 439 LNGTLPETLGSLPELSVLDVSSNSLTGIISEIHFSRLSKLKFLGLSSNSFILNVSSSWIP 498
           L          L +L  L + +N +  I S   F+R+  L+ L L     +  +S     
Sbjct: 124 LTTIPNGAFVYLSKLKELWLRNNPIESIPSYA-FNRIPSLRRLDLGELKRLSYISEGA-- 180

Query: 499 PFQ----VQSLNMRSCQLGPSFPSWLKTQQGVSFLDFSNASISGPIPNWFWDISSKLSLL 554
            F+    ++ LN+  C L    P+     + +  LD S   +S   P  F  +   L  L
Sbjct: 181 -FEGLSNLRYLNLAMCNL-REIPNLTPLIK-LDELDLSGNHLSAIRPGSFQGLMH-LQKL 236

Query: 555 NVSLNQLQGQLPNPLNIAPFADVDFRSNLLEGPIPLPIVEIELLDLSNNHFSGPIPQNIS 614
            +  +Q+Q        I   A   F +        L    +  ++L++N+ +  +P ++ 
Sbjct: 237 WMIQSQIQ-------VIERNA---FDN--------LQ--SLVEINLAHNNLTL-LPHDLF 275

Query: 615 GSMPNLIFLSVSGN 628
             + +L  + +  N
Sbjct: 276 TPLHHLERIHLHHN 289

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 80.2 bits (198), Expect = 8e-16
 Identities = 59/261 (22%), Positives = 98/261 (37%), Gaps = 21/261 (8%)

Query: 101 LDLSFNTFNDIP--IPEFLGSLENLQYLNLSEAGFTGVVPSSLGNLHRLQYFDVSA-ELF 157
           +        ++P  I        N + LNL E     +  +S  +L  L+   +S   + 
Sbjct: 48  VICVRKNLREVPDGIST------NTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIR 101

Query: 158 ALSADSLDWLTGLVSLKHLAMNRVDLSLVGSEWLGILKNLPNLTELHLSVCGLTGSITSI 217
            +   + + L  L +L  L  NR  L+ + +   G    L  L EL L    +  SI S 
Sbjct: 102 TIEIGAFNGLANLNTL-ELFDNR--LTTIPN---GAFVYLSKLKELWLRNNPIE-SIPSY 154

Query: 218 TPVNLTSPAVLDLS-LNHFNSLFPNWLVNISTLVYVDLSDCDLYGRIPIGFGELPNLQYL 276
               + S   LDL  L   + +       +S L Y++L+ C+L   IP     L  L  L
Sbjct: 155 AFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLR-EIP-NLTPLIKLDEL 212

Query: 277 SLAGNNNLSGSCSQLFRGSWKKIQILNFASNKLHGKLPSSVANMTSLTNFDLFDKKVEGG 336
            L   N+LS      F+G    +Q L    +++     ++  N+ SL   +L    +   
Sbjct: 213 DL-SGNHLSAIRPGSFQG-LMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLL 270

Query: 337 IPSSIARLCYLKEFDLSGNNL 357
                  L +L+   L  N  
Sbjct: 271 PHDLFTPLHHLERIHLHHNPW 291

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 80.2 bits (198), Expect = 9e-16
 Identities = 54/215 (25%), Positives = 92/215 (42%), Gaps = 14/215 (6%)

Query: 98  LEYLDLSFNTFNDIPIPEFLGSLENLQYLNLSEAGFTGVVPSSLGNLHRLQYFDVSA-EL 156
           LE L LS N    I I  F G L NL  L L +   T +   +   L +L+   +    +
Sbjct: 90  LEILQLSRNHIRTIEIGAFNG-LANLNTLELFDNRLTTIPNGAFVYLSKLKELWLRNNPI 148

Query: 157 FALSADSLDWLTGLVSLKHLAMNRVDLSLVGSEWLGILKNLPNLTELHLSVCGLTGSITS 216
            ++ + + + +  L  L    + R  LS +     G  + L NL  L+L++C L   I +
Sbjct: 149 ESIPSYAFNRIPSLRRLDLGELKR--LSYISE---GAFEGLSNLRYLNLAMCNLR-EIPN 202

Query: 217 ITPVNLTSPAVLDLSLNHFNSLFPNWLVNISTLVYVDLSDCDLYGRIPIG-FGELPNLQY 275
           +T   L     LDLS NH +++ P     +  L  + +    +   I    F  L +L  
Sbjct: 203 LT--PLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQI-QVIERNAFDNLQSLVE 259

Query: 276 LSLAGNNNLSGSCSQLFRGSWKKIQILNFASNKLH 310
           ++LA +NNL+     LF      ++ ++   N  +
Sbjct: 260 INLA-HNNLTLLPHDLFTP-LHHLERIHLHHNPWN 292

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 46.3 bits (110), Expect = 4e-05
 Identities = 25/108 (23%), Positives = 35/108 (32%), Gaps = 21/108 (19%)

Query: 831 IDLSGNNLH---GDFPTQLTKLVGLVVLNLSRNHIGGQIPENI-SGLHQLASLDLSSNNL 886
           +     NL        T         +LNL  N I   I  N    L  L  L LS N++
Sbjct: 48  VICVRKNLREVPDGISTNTR------LLNLHENQIQ-IIKVNSFKHLRHLEILQLSRNHI 100

Query: 887 SGGIPSSLSSLSFLGYINLSRNQLSGKIPFEGHMTTFDASSFAGNPGL 934
                 + + L+ L  + L  N+L          TT    +F     L
Sbjct: 101 RTIEIGAFNGLANLNTLELFDNRL----------TTIPNGAFVYLSKL 138

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score =  112 bits (283), Expect = 2e-27
 Identities = 64/322 (19%), Positives = 111/322 (34%), Gaps = 80/322 (24%)

Query: 598 LDLSNNHFSGPIPQNISGSMPNLIFLSVSGNRLTGKIPGSIGEMQLLQVIDLSRNSISGS 657
           +  ++   +  +P  I     +   L +  N+L     G   ++  L  + LS N +S  
Sbjct: 12  IRCNSKGLTS-VPTGIP---SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLS-- 65

Query: 658 ISSSIGNCTF-----LKVLDLSYSSLSGVIPASLGQLTRLQSLHLNNNKLTGNLPSS-FQ 711
                 + +      LK LDLS++ +   + ++   L +L+ L   ++ L      S F 
Sbjct: 66  -FKGCCSQSDFGTTSLKYLDLSFNGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFL 123

Query: 712 NLTSLETLDLGNNRFSGNIPSLLGNGFVGLRILSLRSNAFSGEIPSKLSNLSSLQVLDLA 771
           +L +L  LD+ +                        +  F+G        LSSL+VL +A
Sbjct: 124 SLRNLIYLDISHTH-----------------TRVAFNGIFNG--------LSSLEVLKMA 158

Query: 772 ENNLTGSIPGSVGDLKAMAHVQNIVKYLLFGRYRGIYYEENLVINTKGSSKDTPRLFHFI 831
            N+   +                                            +   L  F+
Sbjct: 159 GNSFQENFL-------------------------------------PDIFTELRNL-TFL 180

Query: 832 DLSGNNLHGDFPTQLTKLVGLVVLNLSRNHIGGQIPENI-SGLHQLASLDLSSNNLSGGI 890
           DLS   L    PT    L  L VLN+S N+    +       L+ L  LD S N++    
Sbjct: 181 DLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFF-SLDTFPYKCLNSLQVLDYSLNHIMTSK 239

Query: 891 PSSLSSL-SFLGYINLSRNQLS 911
              L    S L ++NL++N  +
Sbjct: 240 KQELQHFPSSLAFLNLTQNDFA 261

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score =  108 bits (273), Expect = 4e-26
 Identities = 40/191 (20%), Positives = 74/191 (38%), Gaps = 6/191 (3%)

Query: 596 ELLDLSNNHFS-GPIPQNISGSMPNLIFLSVSGNRLTGKIPGSIGEMQLLQVIDLSRNSI 654
             L LS+N  S             +L +L +S N +   +  +   ++ L+ +D   +++
Sbjct: 55  TKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVI-TMSSNFLGLEQLEHLDFQHSNL 113

Query: 655 SGSISSSI-GNCTFLKVLDLSYSSLSGVIPASLGQLTRLQSLHLNNNKLTGNLPS-SFQN 712
                 S+  +   L  LD+S++            L+ L+ L +  N    N     F  
Sbjct: 114 KQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTE 173

Query: 713 LTSLETLDLGNNRFSGNIPSLLGNGFVGLRILSLRSNAFSGEIPSKLSNLSSLQVLDLAE 772
           L +L  LDL   +    +     N    L++L++  N F          L+SLQVLD + 
Sbjct: 174 LRNLTFLDLSQCQLE-QLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSL 232

Query: 773 NNLTGSIPGSV 783
           N++  +     
Sbjct: 233 NHIM-TSKKQE 242

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score =  107 bits (268), Expect = 2e-25
 Identities = 69/296 (23%), Positives = 112/296 (37%), Gaps = 49/296 (16%)

Query: 199 NLTELHLSVCGLTGSITSITPVNLTSPAVLDLSLNHFNSLFPNWLVNISTLVYVDLSDCD 258
           + TE+  +  GLT S+ +  P + T    L+L  N   SL       ++ L  + LS   
Sbjct: 8   SGTEIRCNSKGLT-SVPTGIPSSAT---RLELESNKLQSLPHGVFDKLTQLTKLSLSSNG 63

Query: 259 LYGRIPIG---FGELPNLQYLSLAGNN--NLSGSCSQLFRGSWKKIQILNFASNKLHGKL 313
           L               +L+YL L+ N    +S +   L     ++++ L+F  + L    
Sbjct: 64  LS-FKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGL-----EQLEHLDFQHSNL---- 113

Query: 314 PSSVANMTSLTNFDLFDKKVEGGIPSSIARLCYLKEFDLSGNNLTGSLPEILQGTDLCVS 373
                    ++ F +F              L  L   D+S  +   +   I  G      
Sbjct: 114 -------KQMSEFSVFLS------------LRNLIYLDISHTHTRVAFNGIFNG------ 148

Query: 374 SNSPLPSLISMRL-GNNHLKGKLPEWLSQLENLVELTLSYNLLQGPIPASLGNLKNLTKL 432
               L SL  +++ GN+  +  LP+  ++L NL  L LS   L+   P +  +L +L  L
Sbjct: 149 ----LSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVL 204

Query: 433 NLPGNQLNGTLPETLGSLPELSVLDVSSNSLTGIISEIHFSRLSKLKFLGLSSNSF 488
           N+  N            L  L VLD S N +     +      S L FL L+ N F
Sbjct: 205 NMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDF 260

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 92.4 bits (230), Expect = 2e-20
 Identities = 39/158 (24%), Positives = 67/158 (42%), Gaps = 1/158 (0%)

Query: 596 ELLDLSNNHFSGPIPQNISGSMPNLIFLSVSGNRLTGKIPGSIGEMQLLQVIDLSRNSIS 655
           E LD  +++       ++  S+ NLI+L +S         G    +  L+V+ ++ NS  
Sbjct: 104 EHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQ 163

Query: 656 GSISSSI-GNCTFLKVLDLSYSSLSGVIPASLGQLTRLQSLHLNNNKLTGNLPSSFQNLT 714
            +    I      L  LDLS   L  + P +   L+ LQ L++++N         ++ L 
Sbjct: 164 ENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLN 223

Query: 715 SLETLDLGNNRFSGNIPSLLGNGFVGLRILSLRSNAFS 752
           SL+ LD   N    +    L +    L  L+L  N F+
Sbjct: 224 SLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFA 261

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 87.4 bits (217), Expect = 8e-19
 Identities = 46/216 (21%), Positives = 83/216 (38%), Gaps = 11/216 (5%)

Query: 98  LEYLDLSFNTFNDIPIPEF-LGSLENLQYLNLSEAGFTGVVPSSLGNLHRLQYFDVSA-E 155
           L  L LS N  +             +L+YL+LS  G    + S+   L +L++ D     
Sbjct: 54  LTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVI-TMSSNFLGLEQLEHLDFQHSN 112

Query: 156 LFALSADSLDWLTGLVSLKHLAMNRVDLSLVGSEWLGILKNLPNLTELHLSVCGLTGSIT 215
           L  +S  S+     L +L +L ++     +  +   GI   L +L  L ++      +  
Sbjct: 113 LKQMSEFSV--FLSLRNLIYLDISHTHTRVAFN---GIFNGLSSLEVLKMAGNSFQENFL 167

Query: 216 SITPVNLTSPAVLDLSLNHFNSLFPNWLVNISTLVYVDLSDCDLYGRIPIG-FGELPNLQ 274
                 L +   LDLS      L P    ++S+L  +++S  +    +    +  L +LQ
Sbjct: 168 PDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNF-FSLDTFPYKCLNSLQ 226

Query: 275 YLSLAGNNNLSGSCSQLFRGSWKKIQILNFASNKLH 310
            L  +  N++  S  Q  +     +  LN   N   
Sbjct: 227 VLDYS-LNHIMTSKKQELQHFPSSLAFLNLTQNDFA 261

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 82.4 bits (204), Expect = 4e-17
 Identities = 53/236 (22%), Positives = 91/236 (38%), Gaps = 24/236 (10%)

Query: 345 CYLKEFDLSGNNLT---GSLPEILQGTDLCVSSN----------SPLPSLISMRLGNNHL 391
           C   E   +   LT     +P      +L   SN            L  L  + L +N L
Sbjct: 7   CSGTEIRCNSKGLTSVPTGIPSSATRLEL--ESNKLQSLPHGVFDKLTQLTKLSLSSNGL 64

Query: 392 KGK--LPEWLSQLENLVELTLSYNLLQGPIPASLGNLKNLTKLNLPGNQLNGTLPE--TL 447
             K    +      +L  L LS+N +   + ++   L+ L  L+   + L   + E    
Sbjct: 65  SFKGCCSQSDFGTTSLKYLDLSFNGVIT-MSSNFLGLEQLEHLDFQHSNLK-QMSEFSVF 122

Query: 448 GSLPELSVLDVSSNSLTGIISEIHFSRLSKLKFLGLSSNSFILNVSS-SWIPPFQVQSLN 506
            SL  L  LD+S        + I F+ LS L+ L ++ NSF  N     +     +  L+
Sbjct: 123 LSLRNLIYLDISHTHTRVAFNGI-FNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLD 181

Query: 507 MRSCQLGPSFPSWLKTQQGVSFLDFSNASISGPIPNWFWDISSKLSLLNVSLNQLQ 562
           +  CQL    P+   +   +  L+ S+ +        +  ++S L +L+ SLN + 
Sbjct: 182 LSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNS-LQVLDYSLNHIM 236

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 80.4 bits (199), Expect = 2e-16
 Identities = 54/252 (21%), Positives = 86/252 (34%), Gaps = 39/252 (15%)

Query: 192 GILKNLPNLTELHLSVCGLT-GSITSITPVNLTSPAVLDLSLNHFNSLFPNWLVNISTLV 250
           G+   L  LT+L LS  GL+     S +    TS   LDLS N   ++  +  + +  L 
Sbjct: 46  GVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITM-SSNFLGLEQLE 104

Query: 251 YVDLSDCDLYGRIPIG-FGELPNLQYLSLAGNNNLSGSCSQLFRGSWKKIQILNFASNKL 309
           ++D    +L        F  L NL YL +  + +   + + +F G    +++L  A N  
Sbjct: 105 HLDFQHSNLKQMSEFSVFLSLRNLIYLDI-SHTHTRVAFNGIFNGL-SSLEVLKMAGNSF 162

Query: 310 HGKLPSSVANMTSLTNFDLFDKKVEGGIPSSIARLCYLKEFDLSGNNLTGSLPEILQGTD 369
                                       P     L  L   DLS   L   L        
Sbjct: 163 QENFL-----------------------PDIFTELRNLTFLDLSQCQLE-QLSP------ 192

Query: 370 LCVSSNSPLPSLISMRLGNNHLKGKLPEWLSQLENLVELTLSYNLLQGPIPASLGNL-KN 428
              ++ + L SL  + + +N+           L +L  L  S N +       L +   +
Sbjct: 193 ---TAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSS 249

Query: 429 LTKLNLPGNQLN 440
           L  LNL  N   
Sbjct: 250 LAFLNLTQNDFA 261

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 80.1 bits (198), Expect = 2e-16
 Identities = 54/239 (22%), Positives = 97/239 (40%), Gaps = 17/239 (7%)

Query: 98  LEYLDLSFNTFNDIPIPEFLGSLENLQYLNLS--EAGFTGVVPSSLGNLHRLQYFDVSA- 154
              L+L  N    +P       L  L  L+LS     F G    S      L+Y D+S  
Sbjct: 30  ATRLELESNKLQSLP-HGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFN 88

Query: 155 ELFALSADSLDWLTGLVSLKHLAMNRVDLSLVGSEWLGILKNLPNLTELHLSVCGLTGSI 214
            +  +S++      GL  L+HL     +L  +      +  +L NL  L +S        
Sbjct: 89  GVITMSSN----FLGLEQLEHLDFQHSNLKQMSEF--SVFLSLRNLIYLDISHTHTR-VA 141

Query: 215 TSITPVNLTSPAVLDLSLNHF-NSLFPNWLVNISTLVYVDLSDCDLYGRIPIG-FGELPN 272
            +     L+S  VL ++ N F  +  P+    +  L ++DLS C L  ++    F  L +
Sbjct: 142 FNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQL-EQLSPTAFNSLSS 200

Query: 273 LQYLSLAGNNNLSGSCSQLFRGSWKKIQILNFASNKLHGKLPSSVANM-TSLTNFDLFD 330
           LQ L++  +NN     +  ++     +Q+L+++ N +       + +  +SL   +L  
Sbjct: 201 LQVLNM-SHNNFFSLDTFPYKCL-NSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQ 257

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 65.0 bits (159), Expect = 2e-11
 Identities = 36/200 (18%), Positives = 66/200 (33%), Gaps = 22/200 (11%)

Query: 715 SLETLDLGNNRFSGNIPSLLGNGFVGLRILSLRSNAFSGEIPSKLSNLSSLQVLDLAENN 774
           S   +   +   + ++P+ +         L L SN            L+ L  L L+ N 
Sbjct: 8   SGTEIRCNSKGLT-SVPTGI---PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNG 63

Query: 775 LTGSIPGSVGDLKAMAHVQNIVKYLLFGRYRGIYYEENLVINTKGSSKDTPRLFHFIDLS 834
           L+               ++             +    N VI    +     +L   +D  
Sbjct: 64  LS-FKGCCSQSDFGTTSLKY------------LDLSFNGVITMSSNFLGLEQL-EHLDFQ 109

Query: 835 GNNLHGDFPTQL-TKLVGLVVLNLSRNHIGGQIPENI-SGLHQLASLDLSSNNLSGGIPS 892
            +NL       +   L  L+ L++S  H        I +GL  L  L ++ N+       
Sbjct: 110 HSNLKQMSEFSVFLSLRNLIYLDISHTHT-RVAFNGIFNGLSSLEVLKMAGNSFQENFLP 168

Query: 893 -SLSSLSFLGYINLSRNQLS 911
              + L  L +++LS+ QL 
Sbjct: 169 DIFTELRNLTFLDLSQCQLE 188

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score =  110 bits (278), Expect = 6e-27
 Identities = 55/207 (26%), Positives = 85/207 (41%), Gaps = 9/207 (4%)

Query: 580 RSNLLEGPIPLPIVEIELLDLSNNHFSGPIPQNISGSMPNLIFLSVSGNRLTGKIPGSIG 639
           +  L   P+ +P    + + L  N  S  +P     +  NL  L +  N L      +  
Sbjct: 20  QQGLQAVPVGIP-AASQRIFLHGNRISH-VPAASFRACRNLTILWLHSNVLARIDAAAFT 77

Query: 640 EMQLLQVIDLSRNSISGSISSSI-GNCTFLKVLDLSYSSLSGVIPASLGQLTRLQSLHLN 698
            + LL+ +DLS N+   S+  +       L  L L    L  + P     L  LQ L+L 
Sbjct: 78  GLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQ 137

Query: 699 NNKLTGNLPS-SFQNLTSLETLDLGNNRFSGNIPSLLGNGFVGLRILSLRSNAFSGEIPS 757
           +N L   LP  +F++L +L  L L  NR S ++P     G   L  L L  N  +  +  
Sbjct: 138 DNALQ-ALPDDTFRDLGNLTHLFLHGNRIS-SVPERAFRGLHSLDRLLLHQNRVA-HVHP 194

Query: 758 K-LSNLSSLQVLDLAENNLTGSIPGSV 783
               +L  L  L L  NNL+ ++P   
Sbjct: 195 HAFRDLGRLMTLYLFANNLS-ALPTEA 220

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score =  101 bits (253), Expect = 1e-23
 Identities = 55/247 (22%), Positives = 88/247 (35%), Gaps = 43/247 (17%)

Query: 666 TFLKVLDLSYSSLSGVIPASLGQLTRLQSLHLNNNKLTGNLPSSFQNLTSLETLDLGNNR 725
              + + L  + +S V  AS      L  L L++N L     ++F  L  LE LDL +N 
Sbjct: 32  AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNA 91

Query: 726 FSGNIPSLLGNGFVGLRILSLRSNAFSGEIPSK-LSNLSSLQVLDLAENNLTGSIPGSVG 784
              ++     +G   L  L L       E+       L++LQ L L +N L  ++P    
Sbjct: 92  QLRSVDPATFHGLGRLHTLHLDRCGLQ-ELGPGLFRGLAALQYLYLQDNALQ-ALP---- 145

Query: 785 DLKAMAHVQNIVKYLLFGRYRGIYYEENLVINTKGSSKDTPRLFHFIDLSGNNLHGDFPT 844
                                              + +D   L   + L GN +      
Sbjct: 146 ---------------------------------DDTFRDLGNL-THLFLHGNRISSVPER 171

Query: 845 QLTKLVGLVVLNLSRNHIGGQIPENI-SGLHQLASLDLSSNNLSGGIPSSLSSLSFLGYI 903
               L  L  L L +N +   +  +    L +L +L L +NNLS     +L+ L  L Y+
Sbjct: 172 AFRGLHSLDRLLLHQNRV-AHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYL 230

Query: 904 NLSRNQL 910
            L+ N  
Sbjct: 231 RLNDNPW 237

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 96.2 bits (240), Expect = 7e-22
 Identities = 58/264 (21%), Positives = 90/264 (34%), Gaps = 48/264 (18%)

Query: 626 SGNRLTGKIPGSIGEMQLLQVIDLSRNSISGSISSSIGNCTFLKVLDLSYSSLSGVIPAS 685
               L   +P  I      Q I L  N IS   ++S   C  L +L L  + L+ +  A+
Sbjct: 19  PQQGLQ-AVPVGI--PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAA 75

Query: 686 LGQLTRLQSLHLNNNKLTGNLPSS-FQNLTSLETLDLGNNRFSGNIPSLLGNGFVGLRIL 744
              L  L+ L L++N    ++  + F  L  L TL L        +   L  G   L+ L
Sbjct: 76  FTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQ-ELGPGLFRGLAALQYL 134

Query: 745 SLRSNAFSGEIPSK-LSNLSSLQVLDLAENNLTGSIPGSVGDLKAMAHVQNIVKYLLFGR 803
            L+ NA    +P     +L +L  L L  N ++ S+P                    F  
Sbjct: 135 YLQDNALQ-ALPDDTFRDLGNLTHLFLHGNRIS-SVPERA-----------------F-- 173

Query: 804 YRGIYYEENLVINTKGSSKDTPRLFHFIDLSGNNLHGDFPTQLTKLVGLVVLNLSRNHIG 863
                             +    L   + L  N +    P     L  L+ L L  N++ 
Sbjct: 174 ------------------RGLHSL-DRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNL- 213

Query: 864 GQIPENI-SGLHQLASLDLSSNNL 886
             +P    + L  L  L L+ N  
Sbjct: 214 SALPTEALAPLRALQYLRLNDNPW 237

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 93.9 bits (234), Expect = 4e-21
 Identities = 46/192 (23%), Positives = 69/192 (35%), Gaps = 17/192 (8%)

Query: 598 LDLSNNHFSGPIPQNISGSMPNLIFLSVSGNRLTGKIPGSIGEMQLLQVIDLSRNSISGS 657
                      +P  I         + + GNR++     S    + L ++ L  N +   
Sbjct: 16  TSCPQQGLQA-VPVGIP---AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVL--- 68

Query: 658 ISSSIGNCTF-----LKVLDLSY-SSLSGVIPASLGQLTRLQSLHLNNNKLTGNLPSSFQ 711
             + I    F     L+ LDLS  + L  V PA+   L RL +LHL+   L    P  F+
Sbjct: 69  --ARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFR 126

Query: 712 NLTSLETLDLGNNRFSGNIPSLLGNGFVGLRILSLRSNAFSGEIPSKLSNLSSLQVLDLA 771
            L +L+ L L +N     +P         L  L L  N  S         L SL  L L 
Sbjct: 127 GLAALQYLYLQDNALQ-ALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLH 185

Query: 772 ENNLTGSIPGSV 783
           +N +   +    
Sbjct: 186 QNRVA-HVHPHA 196

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 93.5 bits (233), Expect = 5e-21
 Identities = 51/229 (22%), Positives = 87/229 (37%), Gaps = 18/229 (7%)

Query: 262 RIPIGFGELPNLQYLSLAGNNNLSGSCSQLFRGSWKKIQILNFASNKLHGKLPSSVANMT 321
            +P+G       Q + L   N +S   +  FR   + + IL   SN L     ++   + 
Sbjct: 25  AVPVGI--PAASQRIFL-HGNRISHVPAASFRAC-RNLTILWLHSNVLARIDAAAFTGLA 80

Query: 322 SLTNFDLFDKKVEGGIPSSI-ARLCYLKEFDLSGNNLTGSLPE-ILQGTDLCVSSNSPLP 379
            L   DL D      +  +    L  L    L    L   L   + +G          L 
Sbjct: 81  LLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQ-ELGPGLFRG----------LA 129

Query: 380 SLISMRLGNNHLKGKLPEWLSQLENLVELTLSYNLLQGPIPASLGNLKNLTKLNLPGNQL 439
           +L  + L +N L+    +    L NL  L L  N +      +   L +L +L L  N++
Sbjct: 130 ALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRV 189

Query: 440 NGTLPETLGSLPELSVLDVSSNSLTGIISEIHFSRLSKLKFLGLSSNSF 488
               P     L  L  L + +N+L+ + +E   + L  L++L L+ N +
Sbjct: 190 AHVHPHAFRDLGRLMTLYLFANNLSALPTEA-LAPLRALQYLRLNDNPW 237

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 88.1 bits (219), Expect = 3e-19
 Identities = 50/243 (20%), Positives = 73/243 (30%), Gaps = 46/243 (18%)

Query: 671 LDLSYSSLSGVIPASLGQLTRLQSLHLNNNKLTGNLPSSFQNLTSLETLDLGNNRFSGNI 730
                  L   +P  +      Q + L+ N+++    +SF+   +L  L L +N  +  I
Sbjct: 16  TSCPQQGLQ-AVPVGI--PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLA-RI 71

Query: 731 PSLLGNGFVGLRILSLRSNAFSGEIPSK-LSNLSSLQVLDLAENNLTGSIPGSVGDLKAM 789
            +    G   L  L L  NA    +       L  L  L L    L   +          
Sbjct: 72  DAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQ-ELGP-------- 122

Query: 790 AHVQNIVKYLLFGRYRGIYYEENLVINTKGSSKDTPRLFHFIDLSGNNLHGDFPTQLTKL 849
                                        G  +    L + + L  N L          L
Sbjct: 123 -----------------------------GLFRGLAALQY-LYLQDNALQALPDDTFRDL 152

Query: 850 VGLVVLNLSRNHIGGQIPENI-SGLHQLASLDLSSNNLSGGIPSSLSSLSFLGYINLSRN 908
             L  L L  N I   +PE    GLH L  L L  N ++   P +   L  L  + L  N
Sbjct: 153 GNLTHLFLHGNRIS-SVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFAN 211

Query: 909 QLS 911
            LS
Sbjct: 212 NLS 214

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 86.6 bits (215), Expect = 1e-18
 Identities = 39/157 (24%), Positives = 63/157 (40%), Gaps = 3/157 (1%)

Query: 596 ELLDLSNNHFSGPIPQNISGSMPNLIFLSVSGNRLTGKIPGSIGEMQLLQVIDLSRNSIS 655
           E LDLS+N     +       +  L  L +    L    PG    +  LQ + L  N++ 
Sbjct: 83  EQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQ 142

Query: 656 GSISSSI-GNCTFLKVLDLSYSSLSGVIPASLGQLTRLQSLHLNNNKLTGNLPSSFQNLT 714
            ++      +   L  L L  + +S V   +   L  L  L L+ N++    P +F++L 
Sbjct: 143 -ALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLG 201

Query: 715 SLETLDLGNNRFSGNIPSLLGNGFVGLRILSLRSNAF 751
            L TL L  N  S  +P+        L+ L L  N +
Sbjct: 202 RLMTLYLFANNLS-ALPTEALAPLRALQYLRLNDNPW 237

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 81.6 bits (202), Expect = 6e-17
 Identities = 47/216 (21%), Positives = 81/216 (37%), Gaps = 14/216 (6%)

Query: 98  LEYLDLSFNTFNDIPIPEFLGSLENLQYLNLSEAGFTGVVPSSLGNLHRLQYFDVS--AE 155
            + + L  N  + +P   F     NL  L L       +  ++   L  L+  D+S  A+
Sbjct: 34  SQRIFLHGNRISHVPAASFRA-CRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQ 92

Query: 156 LFALSADSLDWLTGLVSLKHLAMNRVDLSLVGSEWLGILKNLPNLTELHLSVCGLTGSIT 215
           L ++   +   L  L +L HL      L  +G    G+ + L  L  L+L    L  ++ 
Sbjct: 93  LRSVDPATFHGLGRLHTL-HLDRCG--LQELGP---GLFRGLAALQYLYLQDNALQ-ALP 145

Query: 216 SITPVNLTSPAVLDLSLNHFNSLFPNWLVNISTLVYVDLSDCDLYGRIPIG-FGELPNLQ 274
             T  +L +   L L  N  +S+       + +L  + L    +   +    F +L  L 
Sbjct: 146 DDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRV-AHVHPHAFRDLGRLM 204

Query: 275 YLSLAGNNNLSGSCSQLFRGSWKKIQILNFASNKLH 310
            L L   NNLS   ++      + +Q L    N   
Sbjct: 205 TLYL-FANNLSALPTEALAP-LRALQYLRLNDNPWV 238

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 64.6 bits (158), Expect = 2e-11
 Identities = 44/211 (20%), Positives = 73/211 (34%), Gaps = 11/211 (5%)

Query: 122 NLQYLNLSEAGFTGVVPSSLGNLHRLQYFDVSAELFALSADSLDWLTGLVSLKHLAMNR- 180
             Q + L     + V  +S      L    + +    L+       TGL  L+ L ++  
Sbjct: 33  ASQRIFLHGNRISHVPAASFRACRNLTILWLHSN--VLARIDAAAFTGLALLEQLDLSDN 90

Query: 181 VDLSLVGSEWLGILKNLPNLTELHLSVCGLTGSITSITPVNLTSPAVLDLSLNHFNSLFP 240
             L  V          L  L  LHL  CGL   +       L +   L L  N   +L  
Sbjct: 91  AQLRSVDP---ATFHGLGRLHTLHLDRCGLQ-ELGPGLFRGLAALQYLYLQDNALQALPD 146

Query: 241 NWLVNISTLVYVDLSDCDLYGRIPIG-FGELPNLQYLSLAGNNNLSGSCSQLFRGSWKKI 299
           +   ++  L ++ L    +   +P   F  L +L  L L   N ++      FR    ++
Sbjct: 147 DTFRDLGNLTHLFLHGNRI-SSVPERAFRGLHSLDRLLLH-QNRVAHVHPHAFRDL-GRL 203

Query: 300 QILNFASNKLHGKLPSSVANMTSLTNFDLFD 330
             L   +N L      ++A + +L    L D
Sbjct: 204 MTLYLFANNLSALPTEALAPLRALQYLRLND 234

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 63.5 bits (155), Expect = 6e-11
 Identities = 44/249 (17%), Positives = 83/249 (33%), Gaps = 46/249 (18%)

Query: 404 NLVELTLSYNLLQGPIPASLGNLKNLTKLNLPGNQLNGTLPETLGSLPELSVLDVSSNSL 463
               + L  N +     AS    +NLT L L  N L          L  L  LD+S N+ 
Sbjct: 33  ASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQ 92

Query: 464 TGIISEIHFSRLSKLKFLGLSSNSFILNVSSSWIPPFQVQSLNMRSCQLGPSFPSWLKTQ 523
              +    F  L +L  L L                  +Q L           P   +  
Sbjct: 93  LRSVDPATFHGLGRLHTLHLDRC--------------GLQELG----------PGLFRGL 128

Query: 524 QGVSFLDFSNASISGPIPNWFWDISSKLSLLNVSLNQLQGQLPNPLNIAPFADVDFRSNL 583
             + +L   + ++   +P+  +     L+ L +  N++        ++   A   FR   
Sbjct: 129 AALQYLYLQDNALQA-LPDDTFRDLGNLTHLFLHGNRIS-------SVPERA---FR--- 174

Query: 584 LEGPIPLPIVEIELLDLSNNHFSGPIPQNISGSMPNLIFLSVSGNRLTGKIPGSIGEMQL 643
                   +  ++ L L  N  +  +  +    +  L+ L +  N L+     ++  ++ 
Sbjct: 175 -------GLHSLDRLLLHQNRVAH-VHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRA 226

Query: 644 LQVIDLSRN 652
           LQ + L+ N
Sbjct: 227 LQYLRLNDN 235

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 42.3 bits (100), Expect = 5e-04
 Identities = 21/121 (17%), Positives = 33/121 (27%), Gaps = 18/121 (14%)

Query: 829 HFIDLSGNNLHGDFPTQLTKLVGLVVLNLSRNHIGGQIPENISGLHQLASLDLSSNNLSG 888
                    L    P  +        + L  N I      +      L  L L SN L+ 
Sbjct: 14  VTTSCPQQGLQ-AVPVGI--PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLAR 70

Query: 889 GIPSSLSSLSFLGYINLSRNQLSGKIP---FEG------------HMTTFDASSFAGNPG 933
              ++ + L+ L  ++LS N     +    F G             +       F G   
Sbjct: 71  IDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAA 130

Query: 934 L 934
           L
Sbjct: 131 L 131

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score =  111 bits (280), Expect = 8e-27
 Identities = 68/383 (17%), Positives = 130/383 (33%), Gaps = 86/383 (22%)

Query: 345 CYLKEFDLSGNNLTGSLPEILQGTDLCVSSNSPLPSLISMRLGNNHLKGKLPEWLSQLEN 404
           C+L+    S   L  ++P+ +             P    + L NN +     +    L++
Sbjct: 33  CHLRVVQCSDLGLK-AVPKEI------------SPDTTLLDLQNNDISELRKDDFKGLQH 79

Query: 405 LVELTLSYNLLQGPIPASLGNLKNLTKLNLPGNQLNGTLPETLGSLPELSVLDVSSNSLT 464
           L  L L  N +      +   L+ L KL +  N L   +P        L  L +  N + 
Sbjct: 80  LYALVLVNNKISKIHEKAFSPLRKLQKLYISKNHLV-EIPP--NLPSSLVELRIHDNRIR 136

Query: 465 GIISEIHFSRLSKLKFLGLSSNSFILNVSSSWIPPFQVQSLNMRSCQLGPSFPSWLKTQQ 524
             + +  FS L  +  + +  N     + +S   P     L +                 
Sbjct: 137 -KVPKGVFSGLRNMNCIEMGGN----PLENSGFEPGAFDGLKLN---------------- 175

Query: 525 GVSFLDFSNASISGPIPNWFWDISSKLSLLNVSLNQLQGQLPNPLNIAPFADVDFRSNLL 584
              +L  S A ++G   +        L+ L++  N++Q        I     + +     
Sbjct: 176 ---YLRISEAKLTGIPKDLP----ETLNELHLDHNKIQ-------AIELEDLLRYSK--- 218

Query: 585 EGPIPLPIVEIELLDLSNNHFSGPIPQNISGSMPNLIFLSVSGNRLTGKIPGSIGEMQLL 644
                     +  L L +N     I       +P L  L +  N+L+ ++P  + +++LL
Sbjct: 219 ----------LYRLGLGHNQIRM-IENGSLSFLPTLRELHLDNNKLS-RVPAGLPDLKLL 266

Query: 645 QVIDLSRNSISGSISSSIGNCTFLKVLDLSYSSLSGVIPASLGQLTRLQSLHLNNNKLTG 704
           QV+ L  N+I     + +G   F  V                 +      + L NN +  
Sbjct: 267 QVVYLHTNNI-----TKVGVNDFCPV-------------GFGVKRAYYNGISLFNNPVPY 308

Query: 705 NL--PSSFQNLTSLETLDLGNNR 725
               P++F+ +T    +  GN +
Sbjct: 309 WEVQPATFRCVTDRLAIQFGNYK 331

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score =  107 bits (270), Expect = 2e-25
 Identities = 61/271 (22%), Positives = 97/271 (35%), Gaps = 31/271 (11%)

Query: 644 LQVIDLSRNSISGSISSSIGNCTFLKVLDLSYSSLSGVIPASLGQLTRLQSLHLNNNKLT 703
           L+V+  S   +  ++   I       +LDL  + +S +       L  L +L L NNK++
Sbjct: 35  LRVVQCSDLGLK-AVPKEIS--PDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKIS 91

Query: 704 GNLPSSFQNLTSLETLDLGNNRFSGNIPSLLGNGFVGLRILSLRSNAFSGEIPSKLSNLS 763
                +F  L  L+ L +  N     +  +  N    L  L +  N          S L 
Sbjct: 92  KIHEKAFSPLRKLQKLYISKNH----LVEIPPNLPSSLVELRIHDNRIRKVPKGVFSGLR 147

Query: 764 SLQVLDLAENNLTGSI--PGSVGDLKAMAHVQNIVKYLLFGRYRGIYYEENLVINTKGSS 821
           ++  +++  N L  S   PG+   LK           +   +  GI              
Sbjct: 148 NMNCIEMGGNPLENSGFEPGAFDGLKLN------YLRISEAKLTGI-------------P 188

Query: 822 KDTPRLFHFIDLSGNNLHGDFPTQLTKLVGLVVLNLSRNHIGGQIPENI-SGLHQLASLD 880
           KD P   + + L  N +       L +   L  L L  N I   I     S L  L  L 
Sbjct: 189 KDLPETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQI-RMIENGSLSFLPTLRELH 247

Query: 881 LSSNNLSGGIPSSLSSLSFLGYINLSRNQLS 911
           L +N LS  +P+ L  L  L  + L  N ++
Sbjct: 248 LDNNKLS-RVPAGLPDLKLLQVVYLHTNNIT 277

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score =  106 bits (267), Expect = 4e-25
 Identities = 60/346 (17%), Positives = 113/346 (32%), Gaps = 70/346 (20%)

Query: 598 LDLSNNHFSGPIPQNISGSMPNLIFLSVSGNRLTGKIPGSIGEMQLLQVIDLSRNSISGS 657
           +  S+      +P+ IS   P+   L +  N ++         +Q L  + L  N IS  
Sbjct: 38  VQCSDLGLKA-VPKEIS---PDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKI 93

Query: 658 ISSSIGNCTFLKVLDLSYSSLSGVIPASLGQLTRLQSLHLNNNKLTGNLPSSFQNLTSLE 717
              +      L+ L +S + L   IP +L   + L  L +++N++       F  L ++ 
Sbjct: 94  HEKAFSPLRKLQKLYISKNHLV-EIPPNL--PSSLVELRIHDNRIRKVPKGVFSGLRNMN 150

Query: 718 TLDLGNNRFSGNIPSLLGNGFVG--LRILSLRSNAFSGEIPSKLSNLSSLQVLDLAENNL 775
            +++G N    +        F G  L  L +     +  IP  L    +L  L L  N +
Sbjct: 151 CIEMGGNPLENS--GFEPGAFDGLKLNYLRISEAKLT-GIPKDL--PETLNELHLDHNKI 205

Query: 776 TGSIPGSVGDLKAMAHVQNIVKYLLFGRYRGIYYEENLVINTKGSSKDTPRLFHFIDLSG 835
             +I                       RY        L               + + L  
Sbjct: 206 Q-AIELED-----------------LLRYS------KL---------------YRLGLGH 226

Query: 836 NNLHGDFPTQLTKLVGLVVLNLSRNHIGGQIPENISGLHQLASLDLSSNNLSGGIPSS-- 893
           N +       L+ L  L  L+L  N +  ++P  +  L  L  + L +NN++  +  +  
Sbjct: 227 NQIRMIENGSLSFLPTLRELHLDNNKLS-RVPAGLPDLKLLQVVYLHTNNIT-KVGVNDF 284

Query: 894 -----LSSLSFLGYINLSRNQLSGKIPFEGHMTTFDASSFAGNPGL 934
                    ++   I+L  N +               ++F      
Sbjct: 285 CPVGFGVKRAYYNGISLFNNPVP--------YWEVQPATFRCVTDR 322

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 88.5 bits (220), Expect = 4e-19
 Identities = 61/361 (16%), Positives = 119/361 (32%), Gaps = 79/361 (21%)

Query: 428 NLTKLNLPGNQLNGTLPETLGSLPELSVLDVSSNSLTGIISEIHFSRLSKLKFLGLSSNS 487
           +L  +      L   +P+ +   P+ ++LD+ +N ++  + +  F  L  L  L L +N 
Sbjct: 34  HLRVVQCSDLGLK-AVPKEIS--PDTTLLDLQNNDIS-ELRKDDFKGLQHLYALVLVNNK 89

Query: 488 FILNVSSSWIPP------FQVQSLNMRSCQLGPSFPSWLKTQQGVSFLDFSNASISGPIP 541
                  S I         ++Q L +    L                       I   +P
Sbjct: 90  I------SKIHEKAFSPLRKLQKLYISKNHL---------------------VEIPPNLP 122

Query: 542 NWFWDISSKLSLLNVSLNQLQGQLPNPLNIAPFADVDFRSNLLEGPIPLPIVEIELLDLS 601
                  S L  L +  N+++                    +  G   +       +++ 
Sbjct: 123 -------SSLVELRIHDNRIR---------------KVPKGVFSGLRNM-----NCIEMG 155

Query: 602 NNHF-SGPIPQNISGSMPNLIFLSVSGNRLTGKIPGSIGEMQLLQVIDLSRNSISGSISS 660
            N   +          +  L +L +S  +LT  IP  +   + L  + L  N I      
Sbjct: 156 GNPLENSGFEPGAFDGL-KLNYLRISEAKLT-GIPKDL--PETLNELHLDHNKIQAIELE 211

Query: 661 SIGNCTFLKVLDLSYSSLSGVIPASLGQLTRLQSLHLNNNKLTGNLPSSFQNLTSLETLD 720
            +   + L  L L ++ +  +   SL  L  L+ LHL+NNKL+  +P+   +L  L+ + 
Sbjct: 212 DLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLS-RVPAGLPDLKLLQVVY 270

Query: 721 LGNNRFSGNIPS------LLGNGFVGLRILSLRSNAFS-GEIPSKL-SNLSSLQVLDLAE 772
           L  N  +  +          G        +SL +N     E+       ++    +    
Sbjct: 271 LHTNNIT-KVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQFGN 329

Query: 773 N 773
            
Sbjct: 330 Y 330

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 85.8 bits (213), Expect = 4e-18
 Identities = 53/298 (17%), Positives = 89/298 (29%), Gaps = 57/298 (19%)

Query: 596 ELLDLSNNHFSGPIPQNISGSMPNLIFLSVSGNRLTGKIPGSIGEMQLLQVIDLSRNSIS 655
             L L NN  S  I +     +  L  L +S N L  +IP ++     L  + +  N I 
Sbjct: 81  YALVLVNNKISK-IHEKAFSPLRKLQKLYISKNHLV-EIPPNL--PSSLVELRIHDNRIR 136

Query: 656 GSISSSIGNCTFLKVLDLSYSSLSGV-IPASLGQLTRLQSLHLNNNKLTGNLPSSFQNLT 714
                       +  +++  + L             +L  L ++  KLTG          
Sbjct: 137 KVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGLKLNYLRISEAKLTGIPKDLP---E 193

Query: 715 SLETLDLGNNRFSGNIPSLLGNGFVGLRILSLRSNAFSGEIPSKLSNLSSLQVLDLAENN 774
           +L  L L +N+    I       +  L  L L  N         LS L +L+ L L  N 
Sbjct: 194 TLNELHLDHNKIQ-AIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNK 252

Query: 775 LTGSIPGSVGDLKAMAHVQNIVKYLLFGRYRGIYYEENLVINTKGSSKDTPRLFHFIDLS 834
           L+  +P  + DLK +  V                                        L 
Sbjct: 253 LS-RVPAGLPDLKLLQVV---------------------------------------YLH 272

Query: 835 GNNLH----GDFP--TQLTKLVGLVVLNLSRNHIG-GQIPENI-SGLHQLASLDLSSN 884
            NN+      DF       K      ++L  N +   ++       +    ++   + 
Sbjct: 273 TNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQFGNY 330

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 81.6 bits (202), Expect = 1e-16
 Identities = 65/401 (16%), Positives = 108/401 (26%), Gaps = 117/401 (29%)

Query: 98  LEYLDLSFNTFNDIP--IPEFLGSLENLQYLNLSEAGFTGVVPSSLGNLHRLQYFDVSAE 155
           L  +  S      +P  I        +   L+L     + +       L  L        
Sbjct: 35  LRVVQCSDLGLKAVPKEISP------DTTLLDLQNNDISELRKDDFKGLQHLY------- 81

Query: 156 LFALSADSLDWLTGLVSLKHLAMNRVDLSLVGSEWLGILKNLPNLTELHLSVCGLTGSIT 215
                      L        L  N+  +S +          L  L +L++S   L   I 
Sbjct: 82  ----------AL-------VLVNNK--ISKIHE---KAFSPLRKLQKLYISKNHLV-EIP 118

Query: 216 SITPVNLTSPAVLDLSLNHFNSLFPNWLVNISTLVYVDLSDCDLYGRIPIGFGELPNLQY 275
              P +L     L +  N    +                            F  L N+  
Sbjct: 119 PNLPSSLVE---LRIHDNRIRKVPKGV------------------------FSGLRNMNC 151

Query: 276 LSLAGNNNLSGSC--SQLFRGSWKKIQILNFASNKLHGKLPSSVANMTSLTNFDLFDKKV 333
           + + G N L  S      F G   K+  L  +  KL                       +
Sbjct: 152 IEM-GGNPLENSGFEPGAFDGL--KLNYLRISEAKL---------------------TGI 187

Query: 334 EGGIPSSIARLCYLKEFDLSGNNLTGSLPEILQGTDLCVSSNSPLPSLISMRLGNNHLKG 393
              +P +      L E  L  N +     E L               L  + LG+N ++ 
Sbjct: 188 PKDLPET------LNELHLDHNKIQAIELEDLLR----------YSKLYRLGLGHNQIRM 231

Query: 394 KLPEWLSQLENLVELTLSYNLLQGPIPASLGNLKNLTKLNLPGNQLNGTLPET------- 446
                LS L  L EL L  N L   +PA L +LK L  + L  N +   +          
Sbjct: 232 IENGSLSFLPTLRELHLDNNKLSR-VPAGLPDLKLLQVVYLHTNNIT-KVGVNDFCPVGF 289

Query: 447 LGSLPELSVLDVSSNSLTGI-ISEIHFSRLSKLKFLGLSSN 486
                  + + + +N +    +    F  ++    +   + 
Sbjct: 290 GVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQFGNY 330

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 78.1 bits (193), Expect = 2e-15
 Identities = 57/353 (16%), Positives = 113/353 (32%), Gaps = 48/353 (13%)

Query: 267 FGELPNLQYLSLAGNNNLSGSCSQLFRGSW--------------KKIQILNFASNKLHGK 312
              +P+L  L    +      C    R                     +L+  +N +   
Sbjct: 10  TSGIPDLDSLPPTYSAMCPFGCHCHLRVVQCSDLGLKAVPKEISPDTTLLDLQNNDISEL 69

Query: 313 LPSSVANMTSLTNFDLFDKKVEGGIPSSIARLCYLKEFDLSGNNLTGSLPEILQGTDLCV 372
                  +  L    L + K+      + + L  L++  +S N+L   +P  L       
Sbjct: 70  RKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNHLV-EIPPNL------- 121

Query: 373 SSNSPLPSLISMRLGNNHLKGKLPEWLSQLENLVELTLSYNLLQ-GPIPASLGNLKNLTK 431
                  SL+ +R+ +N ++       S L N+  + +  N L+         +   L  
Sbjct: 122 -----PSSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGLKLNY 176

Query: 432 LNLPGNQLNGTLPETLGSLPELSVLDVSSNSLTGIISEIHFSRLSKLKFLGLSSNSFILN 491
           L +   +L   +P+       L+ L +  N +   I      R SKL  LGL  N  I  
Sbjct: 177 LRISEAKLT-GIPK--DLPETLNELHLDHNKIQ-AIELEDLLRYSKLYRLGLGHNQ-IRM 231

Query: 492 VSS-SWIPPFQVQSLNMRSCQLGPSFPSWLKTQQGVSFLDFSNASISGPIPNWFWDISSK 550
           + + S      ++ L++ + +L    P+ L   + +  +     +I+    N F  +   
Sbjct: 232 IENGSLSFLPTLRELHLDNNKLS-RVPAGLPDLKLLQVVYLHTNNITKVGVNDFCPVGFG 290

Query: 551 LSLLNVSLNQLQGQLPNPLNIAPFADVDFRSNLLEGPIPLPIVEIELLDLSNN 603
           +     +   L     NP+         FR           + +   +   N 
Sbjct: 291 VKRAYYNGISLFN---NPVPYWEVQPATFR----------CVTDRLAIQFGNY 330

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 65.4 bits (160), Expect = 2e-11
 Identities = 42/250 (16%), Positives = 72/250 (28%), Gaps = 75/250 (30%)

Query: 664 NCT-FLKVLDLSYSSLSGVIPASLGQLTRLQSLHLNNNKLTGNLPSSFQNLTSLETLDLG 722
            C   L+V+  S   L   +P  +        L L NN ++      F+ L  L  L L 
Sbjct: 30  GCHCHLRVVQCSDLGLK-AVPKEIS--PDTTLLDLQNNDISELRKDDFKGLQHLYALVLV 86

Query: 723 NNRFSGNIPSLLGNGFVGLRILSLRSNAFSGEIPSKLSNLSSLQVLDLAENNLTGSIPGS 782
           NN+                 I  +   AFS         L  LQ L +++N+L   IP  
Sbjct: 87  NNK-----------------ISKIHEKAFSP--------LRKLQKLYISKNHLV-EIP-- 118

Query: 783 VGDLKAMAHVQNIVKYLLFGRYRGIYYEENLVINTKGSSKDTPRLFHFIDLSGNNLHGDF 842
                                                   + P     + +  N +    
Sbjct: 119 ---------------------------------------PNLPSSLVELRIHDNRIRKVP 139

Query: 843 PTQLTKLVGLVVLNLSRNHIG-GQIPENISGLHQLASLDLSSNNLSGGIPSSLSSLSFLG 901
               + L  +  + +  N +             +L  L +S   L+G       +L+ L 
Sbjct: 140 KGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGLKLNYLRISEAKLTGIPKDLPETLNEL- 198

Query: 902 YINLSRNQLS 911
             +L  N++ 
Sbjct: 199 --HLDHNKIQ 206

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score =  110 bits (275), Expect = 4e-25
 Identities = 66/343 (19%), Positives = 116/343 (33%), Gaps = 75/343 (21%)

Query: 587 PIPLPIVEIELLDLSNNHFSG---PIPQNISGSMPNLIFLSVSGNRLTGKIPGSIGEMQL 643
            I LPI       LS N F         +   +       ++ G     +    + E  +
Sbjct: 2   SIMLPINN--NFSLSQNSFYNTISGTYADYFSAWDKWEKQALPGENRN-EAVSLLKECLI 58

Query: 644 --LQVIDLSRNSISGSISSSIGNCTFLKVLDLSYSSLSGVIPASLGQLTRLQSLHLNNNK 701
                + L+R ++S S+  ++     + VL+++ ++L   +P     L  L      +N+
Sbjct: 59  NQFSELQLNRLNLS-SLPDNLP--PQITVLEITQNALI-SLPELPASLEYL---DACDNR 111

Query: 702 LTGNLPSSFQNLTSLETLDLGNNRFSGNIPSLLGNGFVGLRILSLRSNAFSGEIPSKLSN 761
           L+  LP    +L  L   D+ NN+ +  +P L       L  ++  +N  +  +P   ++
Sbjct: 112 LS-TLPELPASLKHL---DVDNNQLT-MLPELPAL----LEYINADNNQLT-MLPELPTS 161

Query: 762 LSSLQVLDLAENNLTGSIPGSVGDLKAMAHVQNIVKYLLFGRYRGIYYEENLVINTKGSS 821
           L   +VL +  N LT  +P     L+A                                 
Sbjct: 162 L---EVLSVRNNQLT-FLPELPESLEA--------------------------------- 184

Query: 822 KDTPRLFHFIDLSGNNLHG--DFPTQLTKLV-GLVVLNLSRNHIGGQIPENISGLHQLAS 878
                    +D+S N L      P +        +      N I   IPENI  L    +
Sbjct: 185 ---------LDVSTNLLESLPAVPVRNHHSEETEIFFRCRENRIT-HIPENILSLDPTCT 234

Query: 879 LDLSSNNLSGGIPSSLSSLSFLGYINLSRNQLSGKIPFEGHMT 921
           + L  N LS  I  SLS  +     +  R   S     +  + 
Sbjct: 235 IILEDNPLSSRIRESLSQQTAQPDYHGPRIYFSMSDGQQNTLH 277

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score =  102 bits (256), Expect = 1e-22
 Identities = 61/319 (19%), Positives = 101/319 (31%), Gaps = 76/319 (23%)

Query: 610 PQNISGSMPNLIFLSVSGNRLTGKIPGSIGEMQLLQVIDLSRNSISGSISSSIGNCTF-- 667
           P N + S+    F     N ++G            +   L   +      S +  C    
Sbjct: 6   PINNNFSLSQNSFY----NTISGTYADYFSAWDKWEKQALPGENR-NEAVSLLKECLINQ 60

Query: 668 LKVLDLSYSSLSGVIPASLGQLTRLQSLHLNNNKLTGNLPSSFQNLTSLETLDLGNNRFS 727
              L L+  +LS  +P +L    ++  L +  N L  +LP       SLE LD  +NR S
Sbjct: 61  FSELQLNRLNLS-SLPDNLPP--QITVLEITQNALI-SLPEL---PASLEYLDACDNRLS 113

Query: 728 GNIPSLLGNGFVGLRILSLRSNAFSGEIPSKLSNLSSLQVLDLAENNLTGSIPGSVGDLK 787
             +P L  +    L+ L + +N  +  +P   + L   + ++   N LT  +P     L+
Sbjct: 114 -TLPELPAS----LKHLDVDNNQLT-MLPELPALL---EYINADNNQLT-MLPELPTSLE 163

Query: 788 AMAHVQNIVKYLLFGRYRGIYYEENLVINTKGSSKDTPRLFHFIDLSGNNLHGDFPTQLT 847
                                                      + +  N L    P    
Sbjct: 164 ------------------------------------------VLSVRNNQL-TFLPELPE 180

Query: 848 KLVGLVVLNLSRNHIGGQIPENISGLHQL----ASLDLSSNNLSGGIPSSLSSLSFLGYI 903
            L     L++S N +   +P      H             N ++  IP ++ SL     I
Sbjct: 181 SLE---ALDVSTNLLE-SLPAVPVRNHHSEETEIFFRCRENRITH-IPENILSLDPTCTI 235

Query: 904 NLSRNQLSGKIPFEGHMTT 922
            L  N LS +I       T
Sbjct: 236 ILEDNPLSSRIRESLSQQT 254

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score =  101 bits (254), Expect = 2e-22
 Identities = 57/322 (17%), Positives = 113/322 (35%), Gaps = 56/322 (17%)

Query: 418 PIPASLGNLKNLTKLNLPGNQLNGTLPETLGSLPELSVLDVSSNSLTGIISEIHFSRLSK 477
            I   + N  +L++ +   N ++GT  +   +  +     +   +    +S +    +++
Sbjct: 2   SIMLPINNNFSLSQNSFY-NTISGTYADYFSAWDKWEKQALPGENRNEAVSLLKECLINQ 60

Query: 478 LKFLGLSSNSFILNVSSSWIPPFQVQSLNMRSCQLG--PSFPSWLKTQQGVSFLDFSNAS 535
              L L+  +  L+     +PP Q+  L +    L   P  P+ L+       LD  +  
Sbjct: 61  FSELQLNRLN--LSSLPDNLPP-QITVLEITQNALISLPELPASLEY------LDACDNR 111

Query: 536 ISGPIPNWFWDISSKLSLLNVSLNQLQGQLPNPLNIAPFADVDFRSNLLEGPIPLPIVEI 595
           +S  +P       + L  L+V  NQL   LP              + L            
Sbjct: 112 LST-LPELP----ASLKHLDVDNNQLT-MLPELP-----------ALL------------ 142

Query: 596 ELLDLSNNHFSGPIPQNISGSMPNLIFLSVSGNRLTGKIPGSIGEMQLLQVIDLSRNSIS 655
           E ++  NN         +     +L  LSV  N+LT  +P        L+ +D+S N + 
Sbjct: 143 EYINADNNQL-----TMLPELPTSLEVLSVRNNQLT-FLPELPES---LEALDVSTNLLE 193

Query: 656 GSISSSIGNCTFLK----VLDLSYSSLSGVIPASLGQLTRLQSLHLNNNKLTGNLPSSFQ 711
            S+ +        +          + ++  IP ++  L    ++ L +N L+  +  S  
Sbjct: 194 -SLPAVPVRNHHSEETEIFFRCRENRIT-HIPENILSLDPTCTIILEDNPLSSRIRESLS 251

Query: 712 NLTSLETLDLGNNRFSGNIPSL 733
             T+          FS +    
Sbjct: 252 QQTAQPDYHGPRIYFSMSDGQQ 273

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score =  100 bits (251), Expect = 5e-22
 Identities = 67/357 (18%), Positives = 121/357 (33%), Gaps = 49/357 (13%)

Query: 580 RSNLLEGPIPLPIVEIELLDLSNNHFSGPIPQNISGSMPNLIFLSVSGNRLTGKIPGSIG 639
           R+  +       I +   L L+  + S  +P N+    P +  L ++ N L   +P    
Sbjct: 46  RNEAVSLLKECLINQFSELQLNRLNLSS-LPDNLP---PQITVLEITQNALI-SLPELPA 100

Query: 640 EMQLLQVIDLSRNSISGSISSSIGNCTFLKVLDLSYSSLSGVIPASLGQLTRLQSLHLNN 699
            ++ L   D   N +S ++     +   LK LD+  + L+ ++P     L   + ++ +N
Sbjct: 101 SLEYL---DACDNRLS-TLPELPAS---LKHLDVDNNQLT-MLPELPALL---EYINADN 149

Query: 700 NKLTGNLPSSFQNLT-----------------SLETLDLGNNRFSGNIPSLLGNGF---V 739
           N+LT  LP    +L                  SLE LD+  N    ++P++         
Sbjct: 150 NQLT-MLPELPTSLEVLSVRNNQLTFLPELPESLEALDVSTNLLE-SLPAVPVRNHHSEE 207

Query: 740 GLRILSLRSNAFSGEIPSKLSNLSSLQVLDLAENNLTGSIPGSVGDLKAMAHVQNIVKYL 799
                  R N  +  IP  + +L     + L +N L+  I  S+    A         Y 
Sbjct: 208 TEIFFRCRENRIT-HIPENILSLDPTCTIILEDNPLSSRIRESLSQQTAQPDYHGPRIYF 266

Query: 800 LFGRYRGIYYEENLVIN-----TKGSSKDTPRLFHFI-DLSGNNLHGDFPTQLTKLVGLV 853
                +       L         +    D  +++H        N    F  +L+  V   
Sbjct: 267 SMSDGQQNTLHRPLADAVTAWFPENKQSDVSQIWHAFEHEEHANTFSAFLDRLSDTVSAR 326

Query: 854 VLNLSRNHIGGQIPENISGLHQLASLDLSSNNLSGGIPSSLSSLSFLGYINLSRNQL 910
             +  R     Q+   +  L   A L   S  ++     S      L + NL +  L
Sbjct: 327 NTSGFRE----QVAAWLEKLSASAELRQQSFAVAADATESCEDRVALTWNNLRKTLL 379

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 90.4 bits (224), Expect = 9e-19
 Identities = 47/300 (15%), Positives = 97/300 (32%), Gaps = 48/300 (16%)

Query: 183 LSLVGSEWLGILKNLPNLTELHLSVCGLTGSITSITPVNLTSPAVLDLSLNHFNSLFPNW 242
           +S   +++               +       +        +    L L+  + +SL  N 
Sbjct: 22  ISGTYADYFSAWDKWEKQALPGENRNEAVSLLKECLINQFS---ELQLNRLNLSSLPDNL 78

Query: 243 LVNISTLVYVDLSDCDLYGRIPIGFGELPNLQYLSLAGN--NNLSGSCSQLFRGSWKKIQ 300
              I+ L   +++   L   +P       +L+YL    N  + L    + L        +
Sbjct: 79  PPQITVL---EITQNAL-ISLP---ELPASLEYLDACDNRLSTLPELPASL--------K 123

Query: 301 ILNFASNKLHGKLPSSVANMTSLTNFDLFDKKVEGGIPSSIARLCYLKEFDLSGNNLTGS 360
            L+  +N+L   LP   A +  +   +  + ++   +P     L  L    +  N LT  
Sbjct: 124 HLDVDNNQLT-MLPELPALLEYI---NADNNQLTM-LPELPTSLEVL---SVRNNQLT-F 174

Query: 361 LPEILQGTDLCVSSNSPLPSLISMRLGNNHLKGKLPEWLSQLENLVE----LTLSYNLLQ 416
           LPE+ +             SL ++ +  N L+  LP    +  +  E         N + 
Sbjct: 175 LPELPE-------------SLEALDVSTNLLES-LPAVPVRNHHSEETEIFFRCRENRIT 220

Query: 417 GPIPASLGNLKNLTKLNLPGNQLNGTLPETLGSLPELSVLDVSSNSLTGIISEIHFSRLS 476
             IP ++ +L     + L  N L+  + E+L                +    + +     
Sbjct: 221 H-IPENILSLDPTCTIILEDNPLSSRIRESLSQQTAQPDYHGPRIYFSMSDGQQNTLHRP 279

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 84.3 bits (208), Expect = 8e-17
 Identities = 62/304 (20%), Positives = 103/304 (33%), Gaps = 45/304 (14%)

Query: 140 SLGNLHRLQYFDVSAELFALSADSLDWLTGLVSLKHLAMNRVDLSLVGSEWLGILKNLPN 199
            + N   L        +    AD                NR +   +  E L     +  
Sbjct: 6   PINNNFSLSQNSFYNTISGTYADYFSAWDKWEKQALPGENRNEAVSLLKECL-----INQ 60

Query: 200 LTELHLSVCGLTGSITSITPVNLTSPAVLDLSLNHFNSLFPNWLVNISTLVYVDLSDCDL 259
            +EL L+   L+ S+    P  +T   VL+++ N   SL P    ++  L   D  D  L
Sbjct: 61  FSELQLNRLNLS-SLPDNLPPQIT---VLEITQNALISL-PELPASLEYL---DACDNRL 112

Query: 260 YGRIPIGFGELPNLQYLSLAGNN--NLSGSCSQLFRGSWKKIQILNFASNKLHGKLPSSV 317
              +P       +L++L +  N    L    + L        + +N  +N+L   LP   
Sbjct: 113 -STLP---ELPASLKHLDVDNNQLTMLPELPALL--------EYINADNNQLT-MLPEL- 158

Query: 318 ANMTSLTNFDLFDKKVEGGIPSSIARLCYLKEFDLSGNNLTGSLPE-ILQGTDLCVSSNS 376
              TSL    + + ++   +P     L  L   D+S N L  SLP   ++          
Sbjct: 159 --PTSLEVLSVRNNQLTF-LPELPESLEAL---DVSTNLLE-SLPAVPVRNHHS------ 205

Query: 377 PLPSLISMRLGNNHLKGKLPEWLSQLENLVELTLSYNLLQGPIPASLGNLKNLTKLNLPG 436
              + I  R   N +   +PE +  L+    + L  N L   I  SL         + P 
Sbjct: 206 -EETEIFFRCRENRIT-HIPENILSLDPTCTIILEDNPLSSRIRESLSQQTAQPDYHGPR 263

Query: 437 NQLN 440
              +
Sbjct: 264 IYFS 267

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 62.7 bits (152), Expect = 4e-10
 Identities = 51/355 (14%), Positives = 103/355 (29%), Gaps = 49/355 (13%)

Query: 98  LEYLDLSFNTFNDIPIPEFLGSLENLQYLNLSEAGFTGVVPSSLGNLHRLQYFDVSAELF 157
              L L+    +   +P+ L     +  L +++      +P    +L  L          
Sbjct: 61  FSELQLNRLNLSS--LPDNLPP--QITVLEITQNALI-SLPELPASLEYLD--------- 106

Query: 158 ALSADSLDWL-TGLVSLKHLAMNRVDLSLVGSEWLGILKNLPNLTELHLSVCGLTGSITS 216
               + L  L     SLKHL ++   L+++             L  ++     LT     
Sbjct: 107 -ACDNRLSTLPELPASLKHLDVDNNQLTMLPEL-------PALLEYINADNNQLTMLPEL 158

Query: 217 ITPVNLTSPAVLDLSLNHFNSLFPNWLVNISTLVYVDLSDCDLYGRIPIGFGELPNLQYL 276
            T  +L     L +  N    L P    ++  L   D+S   L   +P       + +  
Sbjct: 159 PT--SLEV---LSVRNNQLTFL-PELPESLEAL---DVSTNLL-ESLPAVPVRNHHSEET 208

Query: 277 SLA---GNNNLSGSCSQLFRGSWKKIQILNFASNKLHGKLPSSVANMTSLTNFDLFDKKV 333
            +      N ++     +   S      +    N L  ++  S++  T+  ++       
Sbjct: 209 EIFFRCRENRITHIPENI--LSLDPTCTIILEDNPLSSRIRESLSQQTAQPDYHGPRIYF 266

Query: 334 EGGIPSSIARLCYLKEFDLSGNNLTG----SLPEILQGTDLCVSSNSPLPSLISMRLGNN 389
                       +    D             + +I    +    +N+    L  +    +
Sbjct: 267 SMSDGQQ--NTLHRPLADAVTAWFPENKQSDVSQIWHAFEHEEHANTFSAFLDRLSDTVS 324

Query: 390 H-----LKGKLPEWLSQLENLVELTLSYNLLQGPIPASLGNLKNLTKLNLPGNQL 439
                  + ++  WL +L    EL      +      S  +   LT  NL    L
Sbjct: 325 ARNTSGFREQVAAWLEKLSASAELRQQSFAVAADATESCEDRVALTWNNLRKTLL 379

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score =  106 bits (266), Expect = 7e-25
 Identities = 61/297 (20%), Positives = 114/297 (38%), Gaps = 18/297 (6%)

Query: 616 SMPNLIFLSVSGNRLTGKIPGSIGEMQLLQVIDLSRNSISGSISSSIGNCTFLKVLDLSY 675
           S         S   L   IP  +   + ++ +DLS N I+   +S +  C  L+ L L+ 
Sbjct: 29  SCDRNGICKGSSGSLN-SIPSGL--TEAVKSLDLSNNRITYISNSDLQRCVNLQALVLTS 85

Query: 676 SSLSGVIPASLGQLTRLQSLHLNNNKLTGNLPSSFQNLTSLETLDLGNNRFSGNIPSLLG 735
           + ++ +   S   L  L+ L L+ N L+    S F+ L+SL  L+L  N +     + L 
Sbjct: 86  NGINTIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLF 145

Query: 736 NGFVGLRILSLRSNAFSGEIPSK-LSNLSSLQVLDLAENNLTGSIPGSVGDLKAMAHV-- 792
           +    L+IL + +     +I  K  + L+ L+ L++  ++L    P S+  ++ ++H+  
Sbjct: 146 SHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLIL 205

Query: 793 -QNIVKYLLFGRYRGIYYEENLVINTKGSSKDTPRLFHFIDLSGNNLHGDFPTQLTKLVG 851
                  LL          E L +                    + L       L K   
Sbjct: 206 HMKQHILLLEIFVDVTSSVECLELRD----------TDLDTFHFSELSTGETNSLIKKFT 255

Query: 852 LVVLNLSRNHIGGQIPENISGLHQLASLDLSSNNLSGGIPSSLSSLSFLGYINLSRN 908
              + ++   +  Q+ + ++ +  L  L+ S N L          L+ L  I L  N
Sbjct: 256 FRNVKITDESL-FQVMKLLNQISGLLELEFSRNQLKSVPDGIFDRLTSLQKIWLHTN 311

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 87.5 bits (217), Expect = 1e-18
 Identities = 57/357 (15%), Positives = 109/357 (30%), Gaps = 103/357 (28%)

Query: 428 NLTKLNLPGNQLNGTLPETLGSLPELSVLDVSSNSLTGIISEIHFSRLSKLKFLGLSSNS 487
            +  L+L  N++       L     L  L ++SN +  I  +  FS L  L+ L LS N 
Sbjct: 53  AVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDS-FSSLGSLEHLDLSYN- 110

Query: 488 FILNVSSSWIPPFQVQSLNMRSCQLGPSFPSWLKTQQGVSFLDFSNASISGPIPNWFWDI 547
                         + +L+                                   +WF  +
Sbjct: 111 -------------YLSNLS----------------------------------SSWFKPL 123

Query: 548 SSKLSLLNVSLNQLQGQLPNPLNIAPFADVDFRSNLLEGPIPLPIVEIELLDLSNNHFSG 607
           SS L+ LN+  N  +                    L E  +   + ++++L + N     
Sbjct: 124 SS-LTFLNLLGNPYK-------------------TLGETSLFSHLTKLQILRVGNMDTFT 163

Query: 608 PIPQNISGSMPNLIFLSVSGNRLTGKIPGSIGEMQLLQVIDLSRNSISGSISSSIGNCTF 667
            I +     +  L  L +  + L    P S+  +Q +  + L        +   +   + 
Sbjct: 164 KIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSS 223

Query: 668 LKVLDLSY--------SSLSGVIPASLGQLTRLQSLHLNNNKLTGNLPSSFQNLTSLETL 719
           ++ L+L          S LS     SL +    +++ + +  L   +      ++ L  L
Sbjct: 224 VECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLF-QVMKLLNQISGLLEL 282

Query: 720 DLGNNRFSGNIPSLLGNGFVGLRILSLRSNAFSGEIPSKLSNLSSLQVLDLAENNLT 776
           +   N+                   S+    F          L+SLQ + L  N   
Sbjct: 283 EFSRNQLK-----------------SVPDGIF--------DRLTSLQKIWLHTNPWD 314

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 87.5 bits (217), Expect = 2e-18
 Identities = 52/266 (19%), Positives = 92/266 (34%), Gaps = 43/266 (16%)

Query: 646 VIDLSRNSISGSISSSIGNCTFLKVLDLSYSSLSGVIPASLGQLTRLQSLHLNNNKLTGN 705
           +   S  S++ SI S +     +K LDLS + ++ +  + L +   LQ+L L +N +   
Sbjct: 35  ICKGSSGSLN-SIPSGL--TEAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTI 91

Query: 706 LPSSFQNLTSLETLDLGNNRFSGNIPSLLGNGFVGLRILSLRSNAFSGEIPSKLSNLSSL 765
              SF +L SLE LDL  N                  + +L S+ F          LSSL
Sbjct: 92  EEDSFSSLGSLEHLDLSYNY-----------------LSNLSSSWFKP--------LSSL 126

Query: 766 QVLDLAENNLTGSIPGSVGDLKAMAHVQNIVKYLLFGRYRGIYYEENLVINTKGSSKDTP 825
             L+L  N        ++G+    +H+  +    +                 +       
Sbjct: 127 TFLNLLGNPYK-----TLGETSLFSHLTKLQILRVGNMDT-------FTKIQRKDFAGLT 174

Query: 826 RLFHFIDLSGNNLHGDFPTQLTKLVGLVVLNLSRNHIGGQIPENI-SGLHQLASLDLSSN 884
            L   +++  ++L    P  L  +  +  L L        + E        +  L+L   
Sbjct: 175 FL-EELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHI-LLLEIFVDVTSSVECLELRDT 232

Query: 885 NLSGGIPSSLSSLSFLGYINLSRNQL 910
           +L     S LS+      I     + 
Sbjct: 233 DLDTFHFSELSTGETNSLIKKFTFRN 258

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 85.6 bits (212), Expect = 6e-18
 Identities = 52/275 (18%), Positives = 95/275 (34%), Gaps = 16/275 (5%)

Query: 379 PSLISMRLGNNHLKGKLPEWLSQLENLVELTLSYNLLQGPIPASLGNLKNLTKLNLPGNQ 438
            ++ S+ L NN +       L +  NL  L L+ N +      S  +L +L  L+L  N 
Sbjct: 52  EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNY 111

Query: 439 LNGTLPETLGSLPELSVLDVSSNSLTGIISEIHFSRLSKLKFLGLSSNSFILNVSSSWIP 498
           L+         L  L+ L++  N    +     FS L+KL+ L + +      +      
Sbjct: 112 LSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFA 171

Query: 499 PF-QVQSLNMRSCQLGPSFPSWLKTQQGVSFLDFSNASISGPIPNWFWDISSKLSLLNVS 557
               ++ L + +  L    P  LK+ Q VS L          +   F D++S +  L + 
Sbjct: 172 GLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHIL-LLEIFVDVTSSVECLELR 230

Query: 558 LNQLQGQLPNPLNIAPFADVDFRSNLLEGPIPLPIVEIELLDLSNNHFSGPIPQNISGSM 617
              L        +     + +                   + +++      +   +   +
Sbjct: 231 DTDLDT---FHFSELSTGETNSLIKKF---------TFRNVKITDESLFQVMK--LLNQI 276

Query: 618 PNLIFLSVSGNRLTGKIPGSIGEMQLLQVIDLSRN 652
             L+ L  S N+L     G    +  LQ I L  N
Sbjct: 277 SGLLELEFSRNQLKSVPDGIFDRLTSLQKIWLHTN 311

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 85.2 bits (211), Expect = 9e-18
 Identities = 59/295 (20%), Positives = 101/295 (34%), Gaps = 36/295 (12%)

Query: 98  LEYLDLSFNTFNDIPIPEFLGSLENLQYLNLSEAGFTGVVPSSLGNLHRLQYFDVSA-EL 156
           ++ LDLS N    I     L    NLQ L L+  G   +   S  +L  L++ D+S   L
Sbjct: 54  VKSLDLSNNRITYIS-NSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYL 112

Query: 157 FALSADSLDWLTGLVSLKHLAMNRVDLSLVGSEWLGILKNLPNLTELHLSVCGLTGSITS 216
             LS+    W   L SL  L +       +G     +  +L  L  L +        I  
Sbjct: 113 SNLSSS---WFKPLSSLTFLNLLGNPYKTLGET--SLFSHLTKLQILRVGNMDTFTKIQR 167

Query: 217 ITPVNLTSPAVLDLSLNHFNSLFPNWLVNISTLVYVDLSDCDLYGRIPIGFGELPNLQYL 276
                LT    L++  +   S  P  L +I  + ++ L        + I      +++ L
Sbjct: 168 KDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECL 227

Query: 277 SLAGNNNLSGSCSQLFRGSWKKIQILNFASNKLHGKLPSSVANMTSLTNFDLFDKKVEGG 336
            L                      +  F  ++L     +S+    +  N  + D+ +   
Sbjct: 228 ELRDT------------------DLDTFHFSELSTGETNSLIKKFTFRNVKITDESLF-Q 268

Query: 337 IPSSIARLCYLKEFDLSGNNLTGSLPEILQGTDLCVSSNSPLPSLISMRLGNNHL 391
           +   + ++  L E + S N L  S+P+              L SL  + L  N  
Sbjct: 269 VMKLLNQISGLLELEFSRNQLK-SVPD---------GIFDRLTSLQKIWLHTNPW 313

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 83.2 bits (206), Expect = 4e-17
 Identities = 49/277 (17%), Positives = 92/277 (33%), Gaps = 24/277 (8%)

Query: 198 PNLTELHLSVCGLTGSITSITPVNLTSPAVLDLSLNHFNSLFPNWLVNISTLVYVDLSDC 257
             +  L LS   +T  I++       +   L L+ N  N++  +   ++ +L ++DLS  
Sbjct: 52  EAVKSLDLSNNRIT-YISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYN 110

Query: 258 DLYGRIPIG-FGELPNLQYLSLAGNNNLSGSCSQLFRGSWKKIQILNFASNKLHGKLPSS 316
            L   +    F  L +L +L+L   N               K+QIL   +     K+   
Sbjct: 111 YL-SNLSSSWFKPLSSLTFLNL-LGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRK 168

Query: 317 V-ANMTSLTNFDLFDKKVEGGIPSSIARLCYLKEFDLSGNNLTGSLPEILQGTDLCVSSN 375
             A +T L   ++    ++   P S+  +  +    L        L EI           
Sbjct: 169 DFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHI-LLLEI---------FV 218

Query: 376 SPLPSLISMRLGNNHLKG----KLPE----WLSQLENLVELTLSYNLLQGPIPASLGNLK 427
               S+  + L +  L      +L       L +      + ++   L   +   L  + 
Sbjct: 219 DVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLF-QVMKLLNQIS 277

Query: 428 NLTKLNLPGNQLNGTLPETLGSLPELSVLDVSSNSLT 464
            L +L    NQL          L  L  + + +N   
Sbjct: 278 GLLELEFSRNQLKSVPDGIFDRLTSLQKIWLHTNPWD 314

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 79.0 bits (195), Expect = 1e-15
 Identities = 58/326 (17%), Positives = 114/326 (34%), Gaps = 59/326 (18%)

Query: 102 DLSFNTFNDIPIPEFLGSLENLQYLNLSEAGFTGVVPSSLGNLHRLQYFDVSA-ELFALS 160
             S  + N IP     G  E ++ L+LS    T +  S L     LQ   +++  +  + 
Sbjct: 37  KGSSGSLNSIPS----GLTEAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIE 92

Query: 161 ADSLDWLTGLVSLKHLAMNRVDLSLVGSEWLGILKNLPNLTELHLSVCGLTGSITSITPV 220
            DS      L SL+HL ++   LS + S      K L +LT L+L               
Sbjct: 93  EDSFS---SLGSLEHLDLSYNYLSNLSS---SWFKPLSSLTFLNLLG------------- 133

Query: 221 NLTSPAVLDLSLNHFNSLFPN-WLVNISTLVYVDLSDCDLYGRIPIG-FGELPNLQYLSL 278
                       N + +L       +++ L  + + + D + +I    F  L  L+ L +
Sbjct: 134 ------------NPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEI 181

Query: 279 AGNNNLSGSCSQLFRGSWKKIQILNFASNKLHGKLPSSVANMTSLTNFDLFD-------- 330
              ++L     +  +     +  L     +    L   V   +S+   +L D        
Sbjct: 182 -DASDLQSYEPKSLKSIQ-NVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDTFHF 239

Query: 331 KKVEGGIPSSIARLCYLKEFDLSGNNLTGSLPEILQGTDLCVSSNSPLPSLISMRLGNNH 390
            ++  G  +S+ +    +   ++  +L   + ++L            +  L+ +    N 
Sbjct: 240 SELSTGETNSLIKKFTFRNVKITDESLF-QVMKLLNQ----------ISGLLELEFSRNQ 288

Query: 391 LKGKLPEWLSQLENLVELTLSYNLLQ 416
           LK        +L +L ++ L  N   
Sbjct: 289 LKSVPDGIFDRLTSLQKIWLHTNPWD 314

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 68.2 bits (167), Expect = 3e-12
 Identities = 55/249 (22%), Positives = 91/249 (36%), Gaps = 69/249 (27%)

Query: 665 CTFLKVLDLSYSSLSGVIPASLGQLTRLQSLHLNNNKLTGNLPSSFQNLTSLETLDLGNN 724
           C    +   S  SL+  IP+ L     ++SL L+NN++T    S  Q   +L+ L L +N
Sbjct: 30  CDRNGICKGSSGSLN-SIPSGL--TEAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSN 86

Query: 725 RFSGNIPSLLGNGFVGLRILSLRSNAFSGEIPSKLSNLSSLQVLDLAENNLTGSIPGSVG 784
                             I ++  ++FS         L SL+ LDL+ N L+ ++  S  
Sbjct: 87  G-----------------INTIEEDSFSS--------LGSLEHLDLSYNYLS-NLSSSW- 119

Query: 785 DLKAMAHVQNIVKYLLFGRYRGIYYEENLVINTKGSSKDTPRLFHFIDLSGNNLHGDFPT 844
                           F                    K    L  F++L GN       T
Sbjct: 120 ----------------F--------------------KPLSSL-TFLNLLGNPYKTLGET 142

Query: 845 QL-TKLVGLVVLNLSRNHIGGQIPENI-SGLHQLASLDLSSNNLSGGIPSSLSSLSFLGY 902
            L + L  L +L +       +I     +GL  L  L++ +++L    P SL S+  + +
Sbjct: 143 SLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSH 202

Query: 903 INLSRNQLS 911
           + L   Q  
Sbjct: 203 LILHMKQHI 211

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 98.4 bits (245), Expect = 2e-22
 Identities = 52/260 (20%), Positives = 86/260 (33%), Gaps = 28/260 (10%)

Query: 541 PNWFWDISSKLSLLNVSLNQLQ------GQLPNPLNIAPFADVDFRSNLLEGPIPLPIVE 594
              F DI   LSL  +++   +            L I+   ++   +  + G  P P++E
Sbjct: 58  LGQFTDIIKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLE 117

Query: 595 -----IELLDLSNNHFSGP---IPQNISGSMPNLIFLSVSGNRLTGKIPGSIGEMQLLQV 646
                + +L+L N  ++     + +      P L  LS++           +     L  
Sbjct: 118 ATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALST 177

Query: 647 IDLSRNSISGSISSSIGNC-------TFLKVLDLSYSSLSGVIPASLGQLTRLQSLHLNN 699
           +DLS N   G        C         L + +    + SGV  A      +LQ L L++
Sbjct: 178 LDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSH 237

Query: 700 NKLTGNLP-SSFQNLTSLETLDLGNNRFSGNIPSLLGNGFVGLRILSLRSNAFSGEIPSK 758
           N L       S    + L +L+L           +       L +L L  N      PS 
Sbjct: 238 NSLRDAAGAPSCDWPSQLNSLNLSFTGLK----QVPKGLPAKLSVLDLSYNRLD-RNPS- 291

Query: 759 LSNLSSLQVLDLAENNLTGS 778
              L  +  L L  N    S
Sbjct: 292 PDELPQVGNLSLKGNPFLDS 311

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 92.7 bits (230), Expect = 2e-20
 Identities = 55/275 (20%), Positives = 94/275 (34%), Gaps = 38/275 (13%)

Query: 537 SGPIPNWFWDISS------KLSLLNVSLNQLQGQLPNPLNIAPFADV---------DFRS 581
           S P P+W    +       +L     SL  L  ++    ++  F D+           R+
Sbjct: 18  SDPKPDWSSAFNCLGAADVELYGGGRSLEYLLKRVDTEADLGQFTDIIKSLSLKRLTVRA 77

Query: 582 NLLEGPIP------LPIVEIELLDLSNNHFSGPIPQNI-SGSMPNLIFLSVSGNRLTGKI 634
             +   I       L I  ++ L L N   +G  P  +   + P+L  L++         
Sbjct: 78  ARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWAT-R 136

Query: 635 PGSIGEMQ-----LLQVIDLSRNSISGSISSSIGNCTFLKVLDLSYSSLSGVIP----AS 685
              + E+Q      L+V+ +++          +     L  LDLS +   G         
Sbjct: 137 DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALC 196

Query: 686 LGQLTRLQSLHLNNNKLT---GNLPSSFQNLTSLETLDLGNNRFSGNIPSLLGNGFVGLR 742
             +   LQ L L N  +    G   +       L+ LDL +N       +   +    L 
Sbjct: 197 PLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLN 256

Query: 743 ILSLRSNAFSGEIPSKLSNLSSLQVLDLAENNLTG 777
            L+L       ++P  L   + L VLDL+ N L  
Sbjct: 257 SLNLSFTGLK-QVPKGLP--AKLSVLDLSYNRLDR 288

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 89.6 bits (222), Expect = 2e-19
 Identities = 59/291 (20%), Positives = 96/291 (32%), Gaps = 33/291 (11%)

Query: 635 PGSIGEMQLLQVIDLSRNSISGSISSSIGNCTFLKVLDLSYSSLSGVIPASLGQLTRLQS 694
            G      LL+ +D   +    +      +   L V      S        +  ++ LQ 
Sbjct: 40  GGGRSLEYLLKRVDTEADLGQFTDIIKSLSLKRLTVRAARIPSRILFGALRVLGISGLQE 99

Query: 695 LHLNNNKLTGNLPSSFQNLT--SLETLDLGNNRFSGN---IPSLLGNGFVGLRILSLRSN 749
           L L N ++TG  P      T   L  L+L N  ++     +  L      GL++LS+   
Sbjct: 100 LTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQA 159

Query: 750 AFSGEIPSKLSNLSSLQVLDLAENNLTGSI-------PGSVGDLKAMAHVQNIVKYLLFG 802
                   ++    +L  LDL++N   G         P     L+ +A     ++     
Sbjct: 160 HSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGV 219

Query: 803 RYRGIYYEENLVINTKGSSKDTPRLFHFIDLSGNNLHGDFP-TQLTKLVGLVVLNLSRNH 861
                     L                 +DLS N+L              L  LNLS   
Sbjct: 220 CSALAAARVQL---------------QGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTG 264

Query: 862 IGGQIPENISGLHQLASLDLSSNNLSGGIPSSLSSLSFLGYINLSRNQLSG 912
           +  Q+P+ +    +L+ LDLS N L      S   L  +G ++L  N    
Sbjct: 265 LK-QVPKGLP--AKLSVLDLSYNRLDRN--PSPDELPQVGNLSLKGNPFLD 310

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 88.8 bits (220), Expect = 3e-19
 Identities = 58/323 (17%), Positives = 100/323 (30%), Gaps = 58/323 (17%)

Query: 581 SNLLEGPIPLPIVEIELLDLSNNHFSGPIPQNISGSMPNLIFLSVSGNRLTGKIPGSIGE 640
               +  +      +E L    +  +            +L  L+V   R+  +I      
Sbjct: 31  LGAADVELYGGGRSLEYLLKRVDTEADLGQFTDIIKSLSLKRLTVRAARIPSRILFGALR 90

Query: 641 ---MQLLQVIDLSRNSISGSISSSIGNCTFLKVLDLSYSSLS-GVIPASLGQL-----TR 691
              +  LQ + L    ++G+    +   T   +  L+  ++S     A L +L       
Sbjct: 91  VLGISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQQWLKPG 150

Query: 692 LQSLHLNNNKLTGNLPSSFQNLTSLETLDLGNNRFSGNIP---SLLGNGFVGLRILSLRS 748
           L+ L +             +   +L TLDL +N   G      +L    F  L++L+LR+
Sbjct: 151 LKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRN 210

Query: 749 NAF---SGEIPSKLSNLSSLQVLDLAENNLTGSIPGSVGDLKAMAHVQNIVKYLLFGRYR 805
                 SG   +  +    LQ LDL+ N+L  +                           
Sbjct: 211 AGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAP----------------------- 247

Query: 806 GIYYEENLVINTKGSSKDTPRLFHFIDLSGNNLHGDFPTQLTKLVGLVVLNLSRNHIGGQ 865
              +   L                 ++LS   L         KL    VL+LS N +   
Sbjct: 248 SCDWPSQLN---------------SLNLSFTGLKQVPKGLPAKLS---VLDLSYNRLDR- 288

Query: 866 IPENISGLHQLASLDLSSNNLSG 888
            P     L Q+ +L L  N    
Sbjct: 289 NPS-PDELPQVGNLSLKGNPFLD 310

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 80.3 bits (198), Expect = 2e-16
 Identities = 35/203 (17%), Positives = 60/203 (29%), Gaps = 18/203 (8%)

Query: 298 KIQILNFASNKLHGKLPSSVA---NMTSLTNFDLFDKKVEGGIPSSIARLCY--LKEFDL 352
            ++ L   + ++  ++         ++ L    L + +V G  P  +       L   +L
Sbjct: 69  SLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLEATGPDLNILNL 128

Query: 353 SGNNLTGSLPEILQGTDLCVSSNSPLPSLISMRLGNNHLKGKLPEWLSQLENLVELTLSY 412
              +       + +            P L  + +   H      E +     L  L LS 
Sbjct: 129 RNVSWATRDAWLAE------LQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSD 182

Query: 413 NLLQGPI-------PASLGNLKNLTKLNLPGNQLNGTLPETLGSLPELSVLDVSSNSLTG 465
           N   G         P     L+ L   N      +G       +  +L  LD+S NSL  
Sbjct: 183 NPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRD 242

Query: 466 IISEIHFSRLSKLKFLGLSSNSF 488
                     S+L  L LS    
Sbjct: 243 AAGAPSCDWPSQLNSLNLSFTGL 265

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 77.2 bits (190), Expect = 2e-15
 Identities = 51/287 (17%), Positives = 99/287 (34%), Gaps = 24/287 (8%)

Query: 437 NQLNGTLPETLGSLPELSVLDVSSNSLTGIISEIHFSRLSKLKFLGLSSNSF---ILNVS 493
           N L     E  G    L  L    ++   +       +   LK L + +      IL  +
Sbjct: 29  NCLGAADVELYGGGRSLEYLLKRVDTEADLGQFTDIIKSLSLKRLTVRAARIPSRILFGA 88

Query: 494 SSWIPPFQVQSLNMRSCQL-GPSFPSWLK-TQQGVSFLDFSNASISGP---IPNWFWDIS 548
              +    +Q L + + ++ G + P  L+ T   ++ L+  N S +     +      + 
Sbjct: 89  LRVLGISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQQWLK 148

Query: 549 SKLSLLNVSLNQLQGQLPNPLNIAP-FADVDFRSNLLEGPIPLP-------IVEIELLDL 600
             L +L+++           + + P  + +D   N   G   L           +++L L
Sbjct: 149 PGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLAL 208

Query: 601 SNNHFS--GPIPQNISGSMPNLIFLSVSGNRLTGKIPGSIGE-MQLLQVIDLSRNSISGS 657
            N        +   ++ +   L  L +S N L         +    L  ++LS   +   
Sbjct: 209 RNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLK-Q 267

Query: 658 ISSSIGNCTFLKVLDLSYSSLSGVIPASLGQLTRLQSLHLNNNKLTG 704
           +   +     L VLDLSY+ L      S  +L ++ +L L  N    
Sbjct: 268 VPKGLP--AKLSVLDLSYNRLDRN--PSPDELPQVGNLSLKGNPFLD 310

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 71.1 bits (174), Expect = 2e-13
 Identities = 54/295 (18%), Positives = 84/295 (28%), Gaps = 63/295 (21%)

Query: 347 LKEFDLSGNNLTGSLPEILQGTDLCVSSNSPLPSLISMRLGNNHLKGKLPEWLSQL--EN 404
           LK   +    +   +                +  L  + L N  + G  P  L +    +
Sbjct: 70  LKRLTVRAARIPSRILFGA-------LRVLGISGLQELTLENLEVTGTAPPPLLEATGPD 122

Query: 405 LVELTLSYNLLQG--PIPASLGNL--KNLTKLNLPGNQLNGTLPETLGSLPELSVLDVSS 460
           L  L L            A L       L  L++          E +   P LS LD+S 
Sbjct: 123 LNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSD 182

Query: 461 NSLTGIISEIH---FSRLSKLKFLGLSSNSFILNVSSSWIPPFQVQSLNMRSCQLGPSFP 517
           N   G    I      +   L+ L L +                                
Sbjct: 183 NPELGERGLISALCPLKFPTLQVLALRNAGM---------------------ETPSGVCS 221

Query: 518 SWLKTQQGVSFLDFSNASISGPIPNWFWDISSKLSLLNVSLNQLQGQLPNPLNIAPFADV 577
           +    +  +  LD S+ S+         D  S+L+ LN+S   L+ Q+P  L        
Sbjct: 222 ALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLK-QVPKGL-------- 272

Query: 578 DFRSNLLEGPIPLPIVEIELLDLSNNHFSGPIPQNISGSMPNLIFLSVSGNRLTG 632
              + L             +LDLS N      P      +P +  LS+ GN    
Sbjct: 273 --PAKL------------SVLDLSYNRLDR-NPS--PDELPQVGNLSLKGNPFLD 310

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 68.0 bits (166), Expect = 2e-12
 Identities = 39/190 (20%), Positives = 62/190 (32%), Gaps = 10/190 (5%)

Query: 98  LEYLDLSFNTFNDIPI---PEFLGSLENLQYLNLSEAGFTGVVPSSLGNLHRLQYFDVS- 153
           L  L+L   ++                 L+ L++++A         +     L   D+S 
Sbjct: 123 LNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSD 182

Query: 154 -AELFALSADSLDWLTGLVSLKHLAMNRVDLSLVGSEWLGILKNLPNLTELHLSVCGLTG 212
             EL      S        +L+ LA+    +         +      L  L LS   L  
Sbjct: 183 NPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRD 242

Query: 213 SITSITPVNLTSPAVLDLSLNHFNSLFPNWLVNISTLVYVDLSDCDLYGRIPIGFGELPN 272
           +  + +    +    L+LS      +       +S L   DLS   L  R P    ELP 
Sbjct: 243 AAGAPSCDWPSQLNSLNLSFTGLKQVPKGLPAKLSVL---DLSYNRL-DRNPS-PDELPQ 297

Query: 273 LQYLSLAGNN 282
           +  LSL GN 
Sbjct: 298 VGNLSLKGNP 307

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 66.8 bits (163), Expect = 5e-12
 Identities = 53/324 (16%), Positives = 95/324 (29%), Gaps = 50/324 (15%)

Query: 105 FNTFNDIPIPEFLGSLENLQYLNLSEAGFTGVVPSSLGNLHRLQYFDVS-AELFALSADS 163
           FN      +  + G       L   +        + +     L+   V  A + +     
Sbjct: 28  FNCLGAADVELYGGGRSLEYLLKRVDTEADLGQFTDIIKSLSLKRLTVRAARIPSRILFG 87

Query: 164 LDWLTGLVSLKHLAMNRVDLSLVGSEWLGILKNLPNLTELHLSVCGLTG---SITSITPV 220
              + G+  L+ L +  ++++      L      P+L  L+L           +  +   
Sbjct: 88  ALRVLGISGLQELTLENLEVTGTAPPPLLEAT-GPDLNILNLRNVSWATRDAWLAELQQW 146

Query: 221 NLTSPAVLDLSLNHFNSLFPNWLVNISTLVYVDLSDCDLYGRIPIG----FGELPNLQYL 276
                 VL ++  H  +     +     L  +DLSD    G   +       + P LQ L
Sbjct: 147 LKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVL 206

Query: 277 SLAGN--NNLSGSCSQLFRGSWKKIQILNFASNKLHGKLPSSVANMTSLTNFDLFDKKVE 334
           +L        SG CS L   +  ++Q L+ + N L     +   +  S            
Sbjct: 207 ALRNAGMETPSGVCSALA-AARVQLQGLDLSHNSLRDAAGAPSCDWPSQ----------- 254

Query: 335 GGIPSSIARLCYLKEFDLSGNNLTGSLPEILQGTDLCVSSNSPLPSLISMRLGNNHLKGK 394
                       L   +LS   L   +P+ L               L  + L  N L   
Sbjct: 255 ------------LNSLNLSFTGLK-QVPKGL------------PAKLSVLDLSYNRLDRN 289

Query: 395 LPEWLSQLENLVELTLSYNLLQGP 418
                 +L  +  L+L  N     
Sbjct: 290 PSPD--ELPQVGNLSLKGNPFLDS 311

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 54.9 bits (132), Expect = 5e-08
 Identities = 37/217 (17%), Positives = 69/217 (31%), Gaps = 19/217 (8%)

Query: 712 NLTSLETLDLGNNRFSGNIPSLLGNGFVGLRILSLRSNAFSGEIPS---KLSNLSSLQVL 768
              SLE L    +  +           + L+ L++R+      I     ++  +S LQ L
Sbjct: 41  GGRSLEYLLKRVDTEADLGQFTDIIKSLSLKRLTVRAARIPSRILFGALRVLGISGLQEL 100

Query: 769 DLAENNLTGSIPGSVGDLKAMAHVQNIVKYLLFGRYRGIYYEENLVINTKGSSKDTPRLF 828
            L    +TG+ P  + +          +  L     R + +        +      P L 
Sbjct: 101 TLENLEVTGTAPPPLLEATGPD-----LNIL---NLRNVSWATRDAWLAELQQWLKPGLK 152

Query: 829 HFIDLSGNNLHGDFPTQLTKLVGLVVLNLSRNHIGGQIPENIS----GLHQLASLDLSSN 884
             + ++  +       Q+     L  L+LS N   G+     +        L  L L + 
Sbjct: 153 V-LSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNA 211

Query: 885 N---LSGGIPSSLSSLSFLGYINLSRNQLSGKIPFEG 918
                SG   +  ++   L  ++LS N L        
Sbjct: 212 GMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPS 248

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 97.1 bits (242), Expect = 3e-21
 Identities = 78/511 (15%), Positives = 155/511 (30%), Gaps = 130/511 (25%)

Query: 403 ENLVELTLSYNLLQGPIPASLGNLKNLTKLNLPGNQLNGTLPETLGSLPELSVLDVSSNS 462
           +N      +   +Q     S   L  LT L+   + +   +   +  L  L+ L  +SN+
Sbjct: 18  DNFASEVAAAFEMQATDTISEEQLATLTSLDCHNSSIT-DMTG-IEKLTGLTKLICTSNN 75

Query: 463 LTGIISEIHFSRLSKLKFLGLSSNSFI-LNVSSSWIPPFQVQSLNMRSCQLGPSFPSWLK 521
           +T     +  S+ + L +L   SN    L+V+       ++  LN  + +L         
Sbjct: 76  IT----TLDLSQNTNLTYLACDSNKLTNLDVTPL----TKLTYLNCDTNKL--------- 118

Query: 522 TQQGVSFLDFSNASISGPIPNWFWDISSKLSLLNVSLNQLQGQLPNPLNIAPFADVDFRS 581
                + LD S               +  L+ LN + N L              ++D   
Sbjct: 119 -----TKLDVSQ--------------NPLLTYLNCARNTLT-------------EIDVSH 146

Query: 582 NLLEGPIPLPIVEIELLDLSNNHFSGPIPQNISGSMPNLIFLSVSGNRLTGKIPGSIGEM 641
           N           ++  LD   N     +          L  L  S N++T      + + 
Sbjct: 147 N----------TQLTELDCHLNKKITKLD---VTPQTQLTTLDCSFNKITE---LDVSQN 190

Query: 642 QLLQVIDLSRNSISGSISSSIGNCTFLKVLDLSYSSLSGVIPASLGQLTRLQSLHLNNNK 701
           +LL  ++   N+I+      +     L  LD S + L+ +    +  LT+L     + N 
Sbjct: 191 KLLNRLNCDTNNIT---KLDLNQNIQLTFLDCSSNKLTEI---DVTPLTQLTYFDCSVNP 244

Query: 702 LTGNLPSSFQNLTSLETLDLGNNRFSGNIPSLLGNGFVGLRILSLRSNAFSGEIPSKLSN 761
           LT  L  S   L+ L TL         ++  +       L            E+   +++
Sbjct: 245 LT-ELDVS--TLSKLTTLHCIQT----DLLEIDLTHNTQLIYFQAEGCRKIKELD--VTH 295

Query: 762 LSSLQVLDLAENNLTGSIPGSVGDLKAMAHVQNIVKYLLFGRYRGIYYEENLVINTKGSS 821
            + L +LD     +T  +   +     + +                              
Sbjct: 296 NTQLYLLDCQAAGIT-ELD--LSQNPKLVY------------------------------ 322

Query: 822 KDTPRLFHFIDLSGNNLHGDFPTQLTKLVGLVVLNLSRNHIGGQIPENISGLHQLASLDL 881
                    + L+   L  +    ++    L  L+    HI       +  +  L +   
Sbjct: 323 ---------LYLNNTELT-ELD--VSHNTKLKSLSCVNAHI-QDFSS-VGKIPALNNNFE 368

Query: 882 SSNNLSGGIPSSLSSLSFLGYINLSRNQLSG 912
           +          +L++ S    ++       G
Sbjct: 369 AEGQTITMPKETLTNNSLTIAVSPDLLDQFG 399

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 93.6 bits (233), Expect = 4e-20
 Identities = 70/483 (14%), Positives = 146/483 (30%), Gaps = 104/483 (21%)

Query: 254 LSDCDLYGRIPIGFGELPNLQYLSLAGNN--NLSGSCSQLFRGSWKKIQILNFASNKLHG 311
            +  ++     I   +L  L  L    ++  +++G            +  L   SN +  
Sbjct: 25  AAAFEMQATDTISEEQLATLTSLDCHNSSITDMTGI------EKLTGLTKLICTSNNI-T 77

Query: 312 KLPSSVANMTSLTNFDLFDKKVEGGIPSSIARLCYLKEFDLSGNNLTGSLPEILQGTDLC 371
            L   ++  T+LT       K+       +  L  L   +   N LT  L          
Sbjct: 78  TLD--LSQNTNLTYLACDSNKLTN---LDVTPLTKLTYLNCDTNKLT-KLDV-------- 123

Query: 372 VSSNSPLPSLISMRLGNNHLKGKLPEWLSQLENLVELTLSYNLLQGPIPASLGNLKNLTK 431
               S  P L  +    N L  ++   +S    L EL    N     +   +     LT 
Sbjct: 124 ----SQNPLLTYLNCARNTLT-EID--VSHNTQLTELDCHLNKKITKLD--VTPQTQLTT 174

Query: 432 LNLPGNQLNGTLPETLGSLPELSVLDVSSNSLTGIISEIHFSRLSKLKFLGLSSNSFILN 491
           L+   N++   L   +     L+ L+  +N++T    ++  ++  +L FL  SSN     
Sbjct: 175 LDCSFNKIT-ELD--VSQNKLLNRLNCDTNNIT----KLDLNQNIQLTFLDCSSN----- 222

Query: 492 VSSSWIPPFQVQSLNMRSCQLGPSFPSWLKTQQGVSFLDFSNASISGPIPNWFWDISSKL 551
                    ++  +++            L         D S   ++    +      SKL
Sbjct: 223 ---------KLTEIDVTPLTQ-------LTY------FDCSVNPLTELDVSTL----SKL 256

Query: 552 SLLNVSLNQLQGQLPNPLNIAPFADVDFRSNLLEGPIPLPIVEIELLDLSNNHFSGPIPQ 611
           + L+     L              ++D   N           ++             I +
Sbjct: 257 TTLHCIQTDLL-------------EIDLTHNT----------QLIYFQAEGCRK---IKE 290

Query: 612 NISGSMPNLIFLSVSGNRLTGKIPGSIGEMQLLQVIDLSRNSISGSISSSIGNCTFLKVL 671
                   L  L      +T ++   + +   L  + L+   ++      + + T LK L
Sbjct: 291 LDVTHNTQLYLLDCQAAGIT-ELD--LSQNPKLVYLYLNNTELT---ELDVSHNTKLKSL 344

Query: 672 DLSYSSLSGVIPASLGQLTRLQSLHLNNNKLTGNLPSSFQNLTSLETLDLGNNRFSGNIP 731
               + +     +S+G++  L +      +       +  N +    +        GN  
Sbjct: 345 SCVNAHIQDF--SSVGKIPALNNNFEAEGQTITMPKETLTNNSLTIAVSPDLLDQFGNPM 402

Query: 732 SLL 734
           ++ 
Sbjct: 403 NIE 405

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 92.1 bits (229), Expect = 1e-19
 Identities = 66/401 (16%), Positives = 115/401 (28%), Gaps = 54/401 (13%)

Query: 97  LLEYLDLSFNTFNDIPIPEFLGSLENLQYLNLSEAGFTGVVPSSLGNLHRLQYFDVSAEL 156
               +  +F       I      L  L  L+   +  T +  + +  L  L     ++  
Sbjct: 20  FASEVAAAFEMQATDTIS--EEQLATLTSLDCHNSSITDM--TGIEKLTGLTKLICTSNN 75

Query: 157 FALSADSLDWLTGLVSLKHLAMNRVDLSLVGSEWLGILKNLPNLTELHLSVCGLTGSITS 216
                 +LD L+   +L +LA +   L+ +       +  L  LT L+         +T 
Sbjct: 76  I----TTLD-LSQNTNLTYLACDSNKLTNL------DVTPLTKLTYLNCDTN----KLTK 120

Query: 217 ITPVNLTSPAVLDLSLNHFNSLFPNWLVNISTLVYVDLSDCDLYGRIPIGFGELPNLQYL 276
           +          L+ + N    +    + + + L  +D           +       L  L
Sbjct: 121 LDVSQNPLLTYLNCARNTLTEID---VSHNTQLTELDCHLNKKIT--KLDVTPQTQLTTL 175

Query: 277 SLAGNNNLSGSCSQLFRGSWKKIQILNFASNKLHGKLPSSVANMTSLTNFDLFDKKVEGG 336
             + N       SQ      K +  LN  +N +  KL   +     LT  D    K+   
Sbjct: 176 DCSFNKITELDVSQN-----KLLNRLNCDTNNIT-KLD--LNQNIQLTFLDCSSNKLTE- 226

Query: 337 IPSSIARLCYLKEFDLSGNNLTGSLPEILQG-TDLCVSSN-------SPLPSLISMRLGN 388
               +  L  L  FD S N LT      L   T L            +    LI  +   
Sbjct: 227 --IDVTPLTQLTYFDCSVNPLTELDVSTLSKLTTLHCIQTDLLEIDLTHNTQLIYFQAEG 284

Query: 389 NHLKGKLPEWLSQLENLVELTLSYNLLQGPIPASLGNLKNLTKLNLPGNQLNGTLPETLG 448
                +L   ++    L  L      +       L     L  L L   +L   L   + 
Sbjct: 285 CRKIKELD--VTHNTQLYLLDCQAAGIT---ELDLSQNPKLVYLYLNNTELT-ELD--VS 336

Query: 449 SLPELSVLDVSSNSLTGIISEIHFSRLSKLKFLGLSSNSFI 489
              +L  L   +  +    S     ++  L     +    I
Sbjct: 337 HNTKLKSLSCVNAHIQDFSS---VGKIPALNNNFEAEGQTI 374

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 89.4 bits (222), Expect = 9e-19
 Identities = 67/401 (16%), Positives = 130/401 (32%), Gaps = 60/401 (14%)

Query: 549 SKLSLLNVSLNQLQ----GQLPNPLNIAPFADVDFRSNLLEGPIPLPIVEIELLDLSNNH 604
           + L+ L  + N +      Q  N         +   SN L      P+ ++  L+   N 
Sbjct: 64  TGLTKLICTSNNITTLDLSQNTN------LTYLACDSNKLTNLDVTPLTKLTYLNCDTNK 117

Query: 605 FSGPIPQNISGSMPNLIFLSVSGNRLTGKIPGSIGEMQLLQVIDLSRNSISGSISSSIGN 664
            +  +        P L +L+ + N LT +I   +     L  +D   N     +   +  
Sbjct: 118 LT-KLD---VSQNPLLTYLNCARNTLT-EID--VSHNTQLTELDCHLNKKITKLD--VTP 168

Query: 665 CTFLKVLDLSYSSLSGVIPASLGQLTRLQSLHLNNNKLTGNLPSSFQNLTSLETLDLGNN 724
            T L  LD S++ ++ +    + Q   L  L+ + N +T  L         L  LD  +N
Sbjct: 169 QTQLTTLDCSFNKITEL---DVSQNKLLNRLNCDTNNIT-KLD--LNQNIQLTFLDCSSN 222

Query: 725 RFSGNIPSLLGNGFVGLRILSLRSNAFSGEIPSKLSNLSSLQVLDLAENNLTGSIPGSVG 784
           + +     +       L       N  + E+   +S LS L  L   + +L   I  +  
Sbjct: 223 KLT----EIDVTPLTQLTYFDCSVNPLT-ELD--VSTLSKLTTLHCIQTDLL-EIDLTH- 273

Query: 785 DLKAMAHVQNIVKYLLFGRYRGIYYEENLVINTKGSSKDTPRLFHFIDLSGNNLHGDFPT 844
                      + Y            E      +       +L + +D     +     +
Sbjct: 274 --------NTQLIYF---------QAEGCRKIKELDVTHNTQL-YLLDCQAAGITELDLS 315

Query: 845 QLTKLVGLVVLNLSRNHIGGQIPENISGLHQLASLDLSSNNLSGGIPSSLSSLSFLGYIN 904
           Q  K   LV L L+   +  ++   +S   +L SL   + ++     SS+  +  L    
Sbjct: 316 QNPK---LVYLYLNNTEL-TELD--VSHNTKLKSLSCVNAHIQD--FSSVGKIPALNNNF 367

Query: 905 LSRNQLSGKIPFEGHMTTFDASSFAGNPGLCGDPLPVKCQD 945
            +  Q            +   +         G+P+ ++  D
Sbjct: 368 EAEGQTITMPKETLTNNSLTIAVSPDLLDQFGNPMNIEPGD 408

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 88.2 bits (219), Expect = 2e-18
 Identities = 61/374 (16%), Positives = 111/374 (29%), Gaps = 60/374 (16%)

Query: 98  LEYLDLSFNTFNDIPIPEFLGSLENLQYLNLSEAGFTGVVPSSLGNLHRLQYFDVSA-EL 156
           L  L  + N    +     L    NL YL       T +    +  L +L Y +    +L
Sbjct: 66  LTKLICTSNNITTLD----LSQNTNLTYLACDSNKLTNL---DVTPLTKLTYLNCDTNKL 118

Query: 157 FALSADSLDWLTGLVSLKHLAMNRVDLSLVGSEWLGILKNLPNLTELHLSVCGLTGSITS 216
             L       LT L +     +  +D+S           +   LTEL   +      +  
Sbjct: 119 TKLDVSQNPLLTYL-NCARNTLTEIDVS-----------HNTQLTELDCHLNKKITKLDV 166

Query: 217 ITPVNLTSPAVLDLSLNHFNSLFPNWLVNISTLVYVDLSDCDLYGRIPIGFGELPNLQYL 276
                LT+   LD S N    L  +    ++ L   +    ++     +   +   L +L
Sbjct: 167 TPQTQLTT---LDCSFNKITELDVSQNKLLNRL---NCDTNNITK---LDLNQNIQLTFL 217

Query: 277 SLAGNNNLSGSCSQLFRGSWKKIQILNFASNKLHGKLPSSVANMTSLTNFDLFDKKVEGG 336
             + N       + L      ++   + + N L  +L  S   ++ LT        +   
Sbjct: 218 DCSSNKLTEIDVTPL-----TQLTYFDCSVNPLT-ELDVS--TLSKLTTLHCIQTDLLE- 268

Query: 337 IPSSIARLCYLKEFDLSGNNLTGSLPEILQGTDLCVSSNSPLPSLISMRLGNNHLKGKLP 396
               +     L  F   G      L              +    L  +      +  +L 
Sbjct: 269 --IDLTHNTQLIYFQAEGCRKIKELDV------------THNTQLYLLDCQAAGIT-ELD 313

Query: 397 EWLSQLENLVELTLSYNLLQGPIPASLGNLKNLTKLNLPGNQLNGTLPETLGSLPELSVL 456
             LSQ   LV L L+   L   +   + +   L  L+     +       +G +P L+  
Sbjct: 314 --LSQNPKLVYLYLNNTELTE-LD--VSHNTKLKSLSCVNAHIQ-DFSS-VGKIPALNNN 366

Query: 457 DVSSNSLTGIISEI 470
             +      +  E 
Sbjct: 367 FEAEGQTITMPKET 380

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 77.0 bits (190), Expect = 9e-15
 Identities = 57/324 (17%), Positives = 107/324 (33%), Gaps = 71/324 (21%)

Query: 588 IPLPIVEIELLDLSNNHFSGPIPQNISGSMPNLIFLSVSGNRLTGKIPGSIGEMQLLQVI 647
            P      E+        +  I +     +  L  L    + +T  + G I ++  L  +
Sbjct: 15  FPDDNFASEVAAAFEMQATDTISEE---QLATLTSLDCHNSSIT-DMTG-IEKLTGLTKL 69

Query: 648 DLSRNSISGSISSSIGNCTFLKVLDLSYSSLSGVIPASLGQLTRLQSLHLNNNKLTGNLP 707
             + N+I+   +  +   T L  L    + L+ +    +  LT+L  L+ + NKLT    
Sbjct: 70  ICTSNNIT---TLDLSQNTNLTYLACDSNKLTNL---DVTPLTKLTYLNCDTNKLT---K 120

Query: 708 SSFQNLTSLETLDLGNNRFSGNIPSLLGNGFVGLRILSLRSNAFSGEIPSKLSNLSSLQV 767
                   L  L+   N     +  +  +    L  L    N    ++   ++  + L  
Sbjct: 121 LDVSQNPLLTYLNCARN----TLTEIDVSHNTQLTELDCHLNKKITKLD--VTPQTQLTT 174

Query: 768 LDLAENNLTGSIPGSVGDLKAMAHVQNIVKYLLFGRYRGIYYEENLVINTKGSSKDTPRL 827
           LD + N +T      V   K +                                      
Sbjct: 175 LDCSFNKITEL---DVSQNKLL-------------------------------------- 193

Query: 828 FHFIDLSGNNLHGDFPTQLTKLVGLVVLNLSRNHIGGQIPENISGLHQLASLDLSSNNLS 887
            + ++   NN+       L + + L  L+ S N +  +I   ++ L QL   D S N L+
Sbjct: 194 -NRLNCDTNNIT-KLD--LNQNIQLTFLDCSSNKLT-EID--VTPLTQLTYFDCSVNPLT 246

Query: 888 GGIPSSLSSLSFLGYINLSRNQLS 911
               S+LS L+ L   +  +  L 
Sbjct: 247 ELDVSTLSKLTTL---HCIQTDLL 267

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 60.1 bits (146), Expect = 2e-09
 Identities = 43/255 (16%), Positives = 81/255 (31%), Gaps = 60/255 (23%)

Query: 657 SISSSIGNCTFLKVLDLSYSSLSGVIPASLGQLTRLQSLHLNNNKLTGNLPSSFQNLTSL 716
           S +    +  F   +  ++  +      S  QL  L SL  +N+ +T    +  + LT L
Sbjct: 10  SFNDWFPDDNFASEVAAAFE-MQATDTISEEQLATLTSLDCHNSSITD--MTGIEKLTGL 66

Query: 717 ETLDLGNNRFSGNIPSLLGNGFVGLRILSLRSNAFSGEIPSKLSNLSSLQVLDLAENNLT 776
             L   +N  +    S   N    L  L+  SN  +  +   ++ L+ L  L+   N LT
Sbjct: 67  TKLICTSNNITTLDLSQNTN----LTYLACDSNKLT-NLD--VTPLTKLTYLNCDTNKLT 119

Query: 777 GSIPGSVGDLKAMAHVQNIVKYLLFGRYRGIYYEENLVINTKGSSKDTPRLFHFIDLSGN 836
                    L                                           +++ + N
Sbjct: 120 KLDVSQNPLLT------------------------------------------YLNCARN 137

Query: 837 NLHGDFPTQLTKLVGLVVLNLSRNHIGGQIPENISGLHQLASLDLSSNNLSGGIPSSLSS 896
            L       ++    L  L+   N    ++   ++   QL +LD S N ++      +S 
Sbjct: 138 TLT---EIDVSHNTQLTELDCHLNKKITKLD--VTPQTQLTTLDCSFNKITE---LDVSQ 189

Query: 897 LSFLGYINLSRNQLS 911
              L  +N   N ++
Sbjct: 190 NKLLNRLNCDTNNIT 204

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 90.4 bits (225), Expect = 8e-21
 Identities = 27/183 (14%), Positives = 69/183 (37%), Gaps = 9/183 (4%)

Query: 596 ELLDLSNNHFSGPIPQNISGS-MPNLIFLSVSGNRLTGKIPGSIGEMQLLQVIDLSRNSI 654
                 N         NI+ + M +L +++++   +T  + G I     ++ + ++    
Sbjct: 21  TFKAYLNGLLGQSSTANITEAQMNSLTYITLANINVT-DLTG-IEYAHNIKDLTINNIHA 78

Query: 655 SGSISSSIGNCTFLKVLDLSYSSLSGVIPASLGQLTRLQSLHLNNNKLTGNLPSSFQNLT 714
           +    + I   + L+ L +    ++     +L  LT L  L ++++    ++ +    L 
Sbjct: 79  TNY--NPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLP 136

Query: 715 SLETLDLGNNRFSGNIPSLLGNGFVGLRILSLRSNAFSGEIPSKLSNLSSLQVLDLAENN 774
            + ++DL  N    +I  L       L+ L+++ +         + +   L  L      
Sbjct: 137 KVNSIDLSYNGAITDIMPL--KTLPELKSLNIQFDGVHDYRG--IEDFPKLNQLYAFSQT 192

Query: 775 LTG 777
           + G
Sbjct: 193 IGG 195

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 81.2 bits (201), Expect = 1e-17
 Identities = 34/174 (19%), Positives = 63/174 (36%), Gaps = 24/174 (13%)

Query: 316 SVANMTSLTNFDLFDKKVEGGIPSSIARLCY---LKEFDLSGNNLTGSLPEILQGTDLCV 372
           + A M SLT   L +  V     + +  + Y   +K+  ++  + T              
Sbjct: 39  TEAQMNSLTYITLANINV-----TDLTGIEYAHNIKDLTINNIHATN------------Y 81

Query: 373 SSNSPLPSLISMRLGNNHLKGKLPEWLSQLENLVELTLSYNLLQGPIPASLGNLKNLTKL 432
           +  S L +L  +R+    +       LS L +L  L +S++     I   +  L  +  +
Sbjct: 82  NPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSI 141

Query: 433 NLPGNQLNGTLPETLGSLPELSVLDVSSNSLTGIISEIHFSRLSKLKFLGLSSN 486
           +L  N     +   L +LPEL  L++  + +             KL  L   S 
Sbjct: 142 DLSYNGAITDI-MPLKTLPELKSLNIQFDGVHDY---RGIEDFPKLNQLYAFSQ 191

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 72.7 bits (179), Expect = 1e-14
 Identities = 40/221 (18%), Positives = 70/221 (31%), Gaps = 47/221 (21%)

Query: 668 LKVLDLSYSSLSGVIPASLGQLTRLQSLHLNNNKLTGNLPSSFQNLTSLETLDLGNNRFS 727
            K         S     +  Q+  L  + L N  +T +L +  +   +++ L + N   +
Sbjct: 22  FKAYLNGLLGQSSTANITEAQMNSLTYITLANINVT-DL-TGIEYAHNIKDLTINNIHAT 79

Query: 728 GNIPSLLGNGFVGLRILSLRSNAFSGEIPSKLSNLSSLQVLDLAENNLTGSIPGSVGDLK 787
            N   +  +G   L  L +     + +    LS L+SL +LD++ +    SI   +  L 
Sbjct: 80  -NYNPI--SGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLP 136

Query: 788 AMAHVQNIVKYLLFGRYRGIYYEENLVINTKGSSKDTPRLFHFIDLSGNNLHGDFPTQLT 847
                                    +               + IDLS N    D    L 
Sbjct: 137 ------------------------KV---------------NSIDLSYNGAITD-IMPLK 156

Query: 848 KLVGLVVLNLSRNHIGGQIPENISGLHQLASLDLSSNNLSG 888
            L  L  LN+  + +       I    +L  L   S  + G
Sbjct: 157 TLPELKSLNIQFDGVHDY--RGIEDFPKLNQLYAFSQTIGG 195

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 72.7 bits (179), Expect = 1e-14
 Identities = 23/133 (17%), Positives = 53/133 (39%), Gaps = 8/133 (6%)

Query: 649 LSRNSISGSISSSIGNCTFLKVLDLSYSSLSGVIPASLGQLTRLQSLHLNNNKLTGNLPS 708
           L ++S +   + +      L  + L+  +++ +    +     ++ L +NN   T    +
Sbjct: 30  LGQSSTA---NITEAQMNSLTYITLANINVTDLTG--IEYAHNIKDLTINNIHATN--YN 82

Query: 709 SFQNLTSLETLDLGNNRFSGNIPSLLGNGFVGLRILSLRSNAFSGEIPSKLSNLSSLQVL 768
               L++LE L +     + +    L      L +L +  +A    I +K++ L  +  +
Sbjct: 83  PISGLSNLERLRIMGKDVTSDKIPNLSG-LTSLTLLDISHSAHDDSILTKINTLPKVNSI 141

Query: 769 DLAENNLTGSIPG 781
           DL+ N     I  
Sbjct: 142 DLSYNGAITDIMP 154

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 71.1 bits (175), Expect = 3e-14
 Identities = 29/198 (14%), Positives = 72/198 (36%), Gaps = 22/198 (11%)

Query: 269 ELPNLQYLSLAGNNNLSGSCSQLFRGSWKKIQILNFASNKLHGKLPSSVANMTSLTNFDL 328
                    L  ++  + + +Q+       +  +  A+  +   L + +    ++ +  +
Sbjct: 21  TFKAYLNGLLGQSSTANITEAQM-----NSLTYITLANINVT-DL-TGIEYAHNIKDLTI 73

Query: 329 FDKKVEGGIPSSIARLCYLKEFDLSGNNLTGSLPEILQGTDLCVSSNSPLPSLISMRLGN 388
            +        + I+ L  L+   + G ++T             + + S L SL  + + +
Sbjct: 74  NNIHATN--YNPISGLSNLERLRIMGKDVT----------SDKIPNLSGLTSLTLLDISH 121

Query: 389 NHLKGKLPEWLSQLENLVELTLSYNLLQGPIPASLGNLKNLTKLNLPGNQLNGTLPETLG 448
           +     +   ++ L  +  + LSYN     I   L  L  L  LN+  + ++      + 
Sbjct: 122 SAHDDSILTKINTLPKVNSIDLSYNGAITDIMP-LKTLPELKSLNIQFDGVHDYRG--IE 178

Query: 449 SLPELSVLDVSSNSLTGI 466
             P+L+ L   S ++ G 
Sbjct: 179 DFPKLNQLYAFSQTIGGK 196

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 68.8 bits (169), Expect = 2e-13
 Identities = 28/225 (12%), Positives = 71/225 (31%), Gaps = 50/225 (22%)

Query: 688 QLTRLQSLHLNNNKLTGNLPSSFQNLTSLETLDLGNNRFSGNIPSLLGNGFVGLRILSLR 747
                 +  L  +        +   + SL  + L N   + ++  +       ++ L++ 
Sbjct: 21  TFKAYLNGLLGQSSTA---NITEAQMNSLTYITLANINVT-DLTGI--EYAHNIKDLTIN 74

Query: 748 SNAFSGEIPSKLSNLSSLQVLDLAENNLTGSIPGSVGDLKAMAHVQNIVKYLLFGRYRGI 807
           +   +    + +S LS+L+ L +   ++T     ++  L                     
Sbjct: 75  NIHATN--YNPISGLSNLERLRIMGKDVTSDKIPNLSGLT-------------------- 112

Query: 808 YYEENLVINTKGSSKDTPRLFHFIDLSGNNLHGDFPTQLTKLVGLVVLNLSRNHIGGQIP 867
               +L +               +D+S +       T++  L  +  ++LS N     I 
Sbjct: 113 ----SLTL---------------LDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDI- 152

Query: 868 ENISGLHQLASLDLSSNNLSGGIPSSLSSLSFLGYINLSRNQLSG 912
             +  L +L SL++  + +       +     L  +      + G
Sbjct: 153 MPLKTLPELKSLNIQFDGVHD--YRGIEDFPKLNQLYAFSQTIGG 195

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 67.3 bits (165), Expect = 8e-13
 Identities = 29/139 (20%), Positives = 56/139 (40%), Gaps = 5/139 (3%)

Query: 356 NLTGSLPEILQGTDLCVSSNSPLPSLISMRLGNNHLKGKLPEWLSQLENLVELTLSYNLL 415
                L  +L  +     + + + SL  + L N ++   L   +    N+ +LT++    
Sbjct: 21  TFKAYLNGLLGQSSTANITEAQMNSLTYITLANINVT-DLTG-IEYAHNIKDLTINNIHA 78

Query: 416 QGPIPASLGNLKNLTKLNLPGNQLNGTLPETLGSLPELSVLDVSSNSLTGIISEIHFSRL 475
               P  +  L NL +L + G  +       L  L  L++LD+S ++    I     + L
Sbjct: 79  TNYNP--ISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILT-KINTL 135

Query: 476 SKLKFLGLSSNSFILNVSS 494
            K+  + LS N  I ++  
Sbjct: 136 PKVNSIDLSYNGAITDIMP 154

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 60.0 bits (146), Expect = 3e-10
 Identities = 28/202 (13%), Positives = 67/202 (33%), Gaps = 26/202 (12%)

Query: 214 ITSITPVNLTSPAVLDLSLNHFNSLFPNWLVNISTLVYVDLSDCDLYGRIPIGFGELPNL 273
             +I      +     L  +   ++    + +++ +    L++ ++      G     N+
Sbjct: 14  NVNIPDSTFKAYLNGLLGQSSTANITEAQMNSLTYI---TLANINV--TDLTGIEYAHNI 68

Query: 274 QYLSLAGNN--NLSGSCSQLFRGSWKKIQILNFASNKLHGKLPSSVANMTSLTNFDLFDK 331
           + L++   +  N +   S L       ++ L      +      +++ +TSLT  D+   
Sbjct: 69  KDLTINNIHATNYNP-ISGL-----SNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHS 122

Query: 332 KVEGGIPSSIARLCYLKEFDLSGNNLTGSLPEILQGTDLCVSSNSPLPSLISMRLGNNHL 391
             +  I + I  L  +   DLS N     +  +             LP L S+ +  + +
Sbjct: 123 AHDDSILTKINTLPKVNSIDLSYNGAITDIMPL-----------KTLPELKSLNIQFDGV 171

Query: 392 KGKLPEWLSQLENLVELTLSYN 413
                  +     L +L     
Sbjct: 172 HD--YRGIEDFPKLNQLYAFSQ 191

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 59.6 bits (145), Expect = 4e-10
 Identities = 22/138 (15%), Positives = 51/138 (36%), Gaps = 10/138 (7%)

Query: 194 LKNLPNLTELHLSVCGLTGSITSITPV-NLTSPAVLDLSLNHFNSLFPNWLVNISTLVYV 252
           ++   N+ +L ++        T+  P+  L++   L +      S     L  +++L  +
Sbjct: 62  IEYAHNIKDLTINNI----HATNYNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLL 117

Query: 253 DLSDCDLYGRIPIGFGELPNLQYLSLAGNNNLSGSCSQLFRGSWKKIQILNFASNKLHGK 312
           D+S       I      LP +  + L+ N  ++     L   +  +++ LN   + +H  
Sbjct: 118 DISHSAHDDSILTKINTLPKVNSIDLSYNGAIT-DIMPL--KTLPELKSLNIQFDGVHD- 173

Query: 313 LPSSVANMTSLTNFDLFD 330
               + +   L     F 
Sbjct: 174 -YRGIEDFPKLNQLYAFS 190

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 57.3 bits (139), Expect = 2e-09
 Identities = 29/185 (15%), Positives = 58/185 (31%), Gaps = 38/185 (20%)

Query: 98  LEYLDLSFNTFNDIPIPEFLGSLENLQYLNLSEAGFTGVVPSSLGNLHRLQYFDVSAELF 157
           L Y+ L+     D+     +    N++ L ++    T    + +  L  L+   +  +  
Sbjct: 46  LTYITLANINVTDL---TGIEYAHNIKDLTINNIHATNY--NPISGLSNLERLRIMGK-- 98

Query: 158 ALSADSLDWLTGLVSLKHLAMNRVDLSLVGSEWLGILKNLPNLTELHLSVCGLTGSITSI 217
            +++D +  L+GL SL  L ++           L  +  LP +  + LS  G    I  +
Sbjct: 99  DVTSDKIPNLSGLTSLTLLDISHSAHDDSI---LTKINTLPKVNSIDLSYNGAITDIMPL 155

Query: 218 TPVNLTSPAVLDLSLNHFNSLFPNWLVNISTLVYVDLSDCDLYGRIPIGFGELPNLQYLS 277
               L     L++  +  +                             G  + P L  L 
Sbjct: 156 K--TLPELKSLNIQFDGVHDY--------------------------RGIEDFPKLNQLY 187

Query: 278 LAGNN 282
                
Sbjct: 188 AFSQT 192

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 56.5 bits (137), Expect = 4e-09
 Identities = 23/143 (16%), Positives = 45/143 (31%), Gaps = 16/143 (11%)

Query: 98  LEYLDLSFNTFNDIPIPEFLGSLENLQYLNLSEAGFTGVVPSSLGNLHRLQYFDVSA-EL 156
           ++ L ++     +      +  L NL+ L +     T     +L  L  L   D+S    
Sbjct: 68  IKDLTINNIHATNY---NPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAH 124

Query: 157 FALSADSLDWLTGLVSLKHLAMNRVDLSLVGSEWLGILKNLPNLTELHLSVCGLTGSITS 216
                  ++ L  + S+  L+ N     ++       LK LP L  L++   G    +  
Sbjct: 125 DDSILTKINTLPKVNSI-DLSYNGAITDIMP------LKTLPELKSLNIQFDG----VHD 173

Query: 217 ITPV-NLTSPAVLDLSLNHFNSL 238
              + +      L          
Sbjct: 174 YRGIEDFPKLNQLYAFSQTIGGK 196

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 54.6 bits (132), Expect = 2e-08
 Identities = 18/84 (21%), Positives = 35/84 (41%), Gaps = 2/84 (2%)

Query: 831 IDLSGNNLHGDFPTQLTKLVGLVVLNLSRNHIGGQIPENISGLHQLASLDLSSNNLSGGI 890
           + ++  +        ++ L  L  L +    +      N+SGL  L  LD+S +     I
Sbjct: 71  LTINNIHATN--YNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSI 128

Query: 891 PSSLSSLSFLGYINLSRNQLSGKI 914
            + +++L  +  I+LS N     I
Sbjct: 129 LTKINTLPKVNSIDLSYNGAITDI 152

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 48.8 bits (117), Expect = 2e-06
 Identities = 19/85 (22%), Positives = 35/85 (41%), Gaps = 4/85 (4%)

Query: 831 IDLSGNNLHGDFPTQLTKLVGLVVLNLSRNHIGGQIPENISGLHQLASLDLSSNNLSGGI 890
           I L+  N+  D  T +     +  L ++  H        ISGL  L  L +   +++   
Sbjct: 49  ITLANINVT-DL-TGIEYAHNIKDLTINNIHATN--YNPISGLSNLERLRIMGKDVTSDK 104

Query: 891 PSSLSSLSFLGYINLSRNQLSGKIP 915
             +LS L+ L  +++S +     I 
Sbjct: 105 IPNLSGLTSLTLLDISHSAHDDSIL 129

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 46.5 bits (111), Expect = 1e-05
 Identities = 21/156 (13%), Positives = 40/156 (25%), Gaps = 48/156 (30%)

Query: 549 SKLSLLNVSLNQLQGQLPNPLNIAPFADVDFRSNLLEGPIPLPIVEIELLDLSNNHFSGP 608
           S L  L +    +       L+                                      
Sbjct: 88  SNLERLRIMGKDVTSDKIPNLS-------------------------------------- 109

Query: 609 IPQNISGSMPNLIFLSVSGNRLTGKIPGSIGEMQLLQVIDLSRNSISGSISSSIGNCTFL 668
                   + +L  L +S +     I   I  +  +  IDLS N     I   +     L
Sbjct: 110 -------GLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDI-MPLKTLPEL 161

Query: 669 KVLDLSYSSLSGVIPASLGQLTRLQSLHLNNNKLTG 704
           K L++ +  +       +    +L  L+  +  + G
Sbjct: 162 KSLNIQFDGVHDYRG--IEDFPKLNQLYAFSQTIGG 195

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 96.7 bits (240), Expect = 9e-21
 Identities = 63/356 (17%), Positives = 116/356 (32%), Gaps = 56/356 (15%)

Query: 616 SMPNLIFLSVSGNRLTGKIPGSIGEMQLLQVIDLSRNSISGSISSSIGNCTFLKVLDLSY 675
           +    I  ++    +T  +     E+  +  I  + + I  S+   I     +  L L+ 
Sbjct: 19  AFAETIKDNLKKKSVTDAVT--QNELNSIDQIIANNSDIK-SVQG-IQYLPNVTKLFLNG 74

Query: 676 SSLSGVIPASLGQLTRLQSLHLNNNKLTGNLPSSFQNLTSLETLDLGNNRFSGNIPSLLG 735
           + L+ + P  L  L  L  L L+ NK+  +L SS ++L  L++L L +N  S +I  L  
Sbjct: 75  NKLTDIKP--LTNLKNLGWLFLDENKIK-DL-SSLKDLKKLKSLSLEHNGIS-DINGL-- 127

Query: 736 NGFVGLRILSLRSNAFSGEIPSKLSNLSSLQVLDLAENNLTGSIPGSVGDLKAMAHVQNI 795
                L  L L +N  +    + LS L+ L  L L +N ++        D+  +A +  +
Sbjct: 128 VHLPQLESLYLGNNKIT--DITVLSRLTKLDTLSLEDNQIS--------DIVPLAGLTKL 177

Query: 796 VKYLLFGRYRGIYYEENLVINTKGSSKDTPRLFHFIDLSGNNLHGDFPTQLTKLVGLVVL 855
                                              + LS N++  D    L  L  L VL
Sbjct: 178 QN---------------------------------LYLSKNHIS-DLR-ALAGLKNLDVL 202

Query: 856 NLSRNHIGGQIPENISGLHQLASLDLSSNNLSGGIPSSLSSLSFLGYINLSRNQLSGKIP 915
            L       +   + S L    ++  +  +L      S         +     + + ++ 
Sbjct: 203 ELFSQECLNKPINHQSNLVVPNTVKNTDGSLVTPEIISDDGDYEKPNVKWHLPEFTNEVS 262

Query: 916 FEGHMTTFDASSFAGNPGLCGDPLPVKCQDDESDKGGNVVEDDNEDEFIDKWFYFS 971
           F  +       + A   G    PL           G  +         I      +
Sbjct: 263 FIFYQPVTIGKAKARFHGRVTQPLKEVYTVSYDVDGTVIKTKVEAGTRITAPKPPT 318

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 82.8 bits (204), Expect = 2e-16
 Identities = 57/299 (19%), Positives = 97/299 (32%), Gaps = 36/299 (12%)

Query: 214 ITSITPV-NLTSPAVLDLSLNHFNSLFPNWLVNISTLVYVDLSDCDLYGRIPIGFGELPN 272
           I  I P          +L               ++++  +  ++ D+   +  G   LPN
Sbjct: 11  IKQIFPDDAFAETIKDNLKKKSVTDAVT--QNELNSIDQIIANNSDI-KSVQ-GIQYLPN 66

Query: 273 LQYLSLAGNNNLSGSCSQLFRGSWKKIQILNFASNKLHGKLPSSVANMTSLTNFDLFD-- 330
           +  L L   N L+     L   + K +  L    NK+   L SS+ ++  L +  L    
Sbjct: 67  VTKLFL-NGNKLT-DIKPL--TNLKNLGWLFLDENKIK-DL-SSLKDLKKLKSLSLEHNG 120

Query: 331 -KKVEGGIPSSIARLCYLKEFDLSGNNLTGSLPEILQGTDLCVSSNSPLPSLISMRLGNN 389
              + G     +  L  L+   L  N +T             ++  S L  L ++ L +N
Sbjct: 121 ISDING-----LVHLPQLESLYLGNNKIT------------DITVLSRLTKLDTLSLEDN 163

Query: 390 HLKGKLPEWLSQLENLVELTLSYNLLQGPIPASLGNLKNLTKLNLPGNQLNGTLPETLGS 449
            +   +   L+ L  L  L LS N +      +L  LKNL  L L   +          +
Sbjct: 164 QIS-DIVP-LAGLTKLQNLYLSKNHIS--DLRALAGLKNLDVLELFSQECLNKPINHQSN 219

Query: 450 LPELSVLDVSSNSLTGIISEIHFSRLSKLKFLGLSSNSFILNVSSSWIPPFQVQSLNMR 508
           L   + +  +  SL             K          F   VS  +  P  +     R
Sbjct: 220 LVVPNTVKNTDGSLVTPEIISDDGDYEKPNVKW-HLPEFTNEVSFIFYQPVTIGKAKAR 277

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 75.9 bits (186), Expect = 3e-14
 Identities = 44/277 (15%), Positives = 98/277 (35%), Gaps = 40/277 (14%)

Query: 167 LTGLVSLKHLAMNRVDLSLVGSEWLGILKNLPNLTELHLSVCGLTGSITSITPV-NLTSP 225
                      + +  ++   +        L ++ ++  +       I S+  +  L + 
Sbjct: 17  DDAFAETIKDNLKKKSVTDAVT-----QNELNSIDQIIANNSD----IKSVQGIQYLPNV 67

Query: 226 AVLDLSLNHFNSLFPNWLVNISTLVYVDLSDCDLYGRIPIGFGELPNLQYLSLAGNN--N 283
             L L+ N    + P  L N+  L ++ L +  +   +     +L  L+ LSL  N   +
Sbjct: 68  TKLFLNGNKLTDIKP--LTNLKNLGWLFLDENKI-KDLS-SLKDLKKLKSLSLEHNGISD 123

Query: 284 LSGSCSQLFRGSWKKIQILNFASNKLHGKLPSSVANMTSLTNFDLFDKKVEGGIPSSIAR 343
           ++G    L      +++ L   +NK+     + ++ +T L    L D ++       +A 
Sbjct: 124 ING----L--VHLPQLESLYLGNNKI--TDITVLSRLTKLDTLSLEDNQISD--IVPLAG 173

Query: 344 LCYLKEFDLSGNNLTGSLPEILQGTDLCVSSNSPLPSLISMRLGNNHLKGKLPEWLSQLE 403
           L  L+   LS N+++             + + + L +L  + L +     K     S L 
Sbjct: 174 LTKLQNLYLSKNHIS------------DLRALAGLKNLDVLELFSQECLNKPINHQSNLV 221

Query: 404 NLVELTLSYNLLQGPIPASLGNLKNLTKLNLPGNQLN 440
               +  +   L  P   S  +  +  K N+  +   
Sbjct: 222 VPNTVKNTDGSLVTPEIIS--DDGDYEKPNVKWHLPE 256

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 72.4 bits (177), Expect = 4e-13
 Identities = 47/303 (15%), Positives = 102/303 (33%), Gaps = 79/303 (26%)

Query: 429 LTKLNLPGNQLNGTLPETLGSLPELSVLDVSSNSLTGIISEIHFSRLSKLKFLGLSSNSF 488
           + +       +    P    +  E    ++   S+T  ++    + L+ +  +  +++  
Sbjct: 1   MGETITVSTPIKQIFP--DDAFAETIKDNLKKKSVTDAVT---QNELNSIDQIIANNS-- 53

Query: 489 ILNVSSSWIPPFQVQSLNMRSCQLGPSFPSWLKTQQGVSFLDFSNASISGPIPNWFWDIS 548
             ++ S  +   Q               P+ +        L  +   ++        DI 
Sbjct: 54  --DIKS--VQGIQ-------------YLPN-VTK------LFLNGNKLT--------DIK 81

Query: 549 -----SKLSLLNVSLNQLQGQLPNPLNIAPFADVDFRSNLLEGPIPLPIVEIELLDLSNN 603
                  L  L +  N+++       +++   D               + +++ L L +N
Sbjct: 82  PLTNLKNLGWLFLDENKIK-------DLSSLKD---------------LKKLKSLSLEHN 119

Query: 604 HFSGPIPQNISG--SMPNLIFLSVSGNRLTGKIPGSIGEMQLLQVIDLSRNSISGSISSS 661
             S     +I+G   +P L  L +  N++T  I   +  +  L  + L  N IS  I   
Sbjct: 120 GIS-----DINGLVHLPQLESLYLGNNKIT-DITV-LSRLTKLDTLSLEDNQIS-DIVP- 170

Query: 662 IGNCTFLKVLDLSYSSLSGVIPASLGQLTRLQSLHLNNNKLTGNLPSSFQNLTSLETLDL 721
           +   T L+ L LS + +S +    L  L  L  L L + +      +   NL    T+  
Sbjct: 171 LAGLTKLQNLYLSKNHISDLRA--LAGLKNLDVLELFSQECLNKPINHQSNLVVPNTVKN 228

Query: 722 GNN 724
            + 
Sbjct: 229 TDG 231

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 70.1 bits (171), Expect = 2e-12
 Identities = 54/344 (15%), Positives = 102/344 (29%), Gaps = 71/344 (20%)

Query: 98  LEYLDLSFNTFNDIPIPEFLGSLENLQYLNLSEAGFTGVVPSSLGNLHRLQYFDVSAELF 157
           +            I       +       NL +   T  V      L+ +     +    
Sbjct: 1   MGETITVSTPIKQI---FPDDAFAETIKDNLKKKSVTDAVT--QNELNSIDQIIANNSDI 55

Query: 158 ALSADSLDWLTGLVSLKHLAMNRV-DLSLVGSEWLGILKNLPNLTELHLSVCGLTGSITS 216
             S   + +L  +  L  L  N++ D+          L NL NL  L L        I  
Sbjct: 56  K-SVQGIQYLPNVTKL-FLNGNKLTDIK--------PLTNLKNLGWLFLDEN----KIKD 101

Query: 217 ITPV-NLTSPAVLDLSLNHFNSLFPNWLVNISTLVYVDLSDCDLYGRIPIGFGELPNLQY 275
           ++ + +L     L L  N            IS +                G   LP L+ 
Sbjct: 102 LSSLKDLKKLKSLSLEHN-----------GISDI---------------NGLVHLPQLES 135

Query: 276 LSLAGNN--NLSGSCSQLFRGSWKKIQILNFASNKLHGKLPSSVANMTSLTNFDLFDKKV 333
           L L  N   +++            K+  L+   N++   +   +A +T L N  L    +
Sbjct: 136 LYLGNNKITDITV------LSRLTKLDTLSLEDNQIS-DI-VPLAGLTKLQNLYLSKNHI 187

Query: 334 EGGIPSSIARLCYLKEFDLSGNNLTGSLPEILQGTDLCVSSNSPLPSLISMRLGNNHLKG 393
                 ++A L  L   +L                +  ++  S L    +++  +  L  
Sbjct: 188 S--DLRALAGLKNLDVLELFSQEC----------LNKPINHQSNLVVPNTVKNTDGSLVT 235

Query: 394 KLPEWLSQLENLVELTLSYNLLQGPIPASLGNLKNLTKLNLPGN 437
             PE +S   +  +  + ++L +     S    + +T       
Sbjct: 236 --PEIISDDGDYEKPNVKWHLPEFTNEVSFIFYQPVTIGKAKAR 277

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 89.4 bits (222), Expect = 1e-19
 Identities = 46/197 (23%), Positives = 81/197 (41%), Gaps = 11/197 (5%)

Query: 598 LDLSNNHFSGPIPQNISGSMPNLIFLSVSGNRLTGKIPGSIGEMQLLQVIDLSRNSISGS 657
           ++    + +  +P ++     +   L +S N L      ++     L  ++L R  ++  
Sbjct: 15  VNCDKRNLTA-LPPDLP---KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELT-K 69

Query: 658 ISSSIGNCTFLKVLDLSYSSLSGVIPASLGQLTRLQSLHLNNNKLTGNLPSSFQNLTSLE 717
           +    G    L  LDLS++ L   +P     L  L  L ++ N+LT     + + L  L+
Sbjct: 70  LQVD-GTLPVLGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQ 127

Query: 718 TLDLGNNRFSGNIPSLLGNGFVGLRILSLRSNAFSGEIPSKL-SNLSSLQVLDLAENNLT 776
            L L  N     +P  L      L  LSL +N  + E+P+ L + L +L  L L EN+L 
Sbjct: 128 ELYLKGNELK-TLPPGLLTPTPKLEKLSLANNNLT-ELPAGLLNGLENLDTLLLQENSLY 185

Query: 777 GSIPGSVGDLKAMAHVQ 793
            +IP        +    
Sbjct: 186 -TIPKGFFGSHLLPFAF 201

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 77.1 bits (190), Expect = 2e-15
 Identities = 52/250 (20%), Positives = 83/250 (33%), Gaps = 57/250 (22%)

Query: 664 NCTFLKVLDLSYSSLSGV---IPASLGQLTRLQSLHLNNNKLTGNLPSSFQNLTSLETLD 720
                  ++    +L+ +   +P           LHL+ N L     ++    T L  L+
Sbjct: 8   KVASHLEVNCDKRNLTALPPDLPKDT------TILHLSENLLYTFSLATLMPYTRLTQLN 61

Query: 721 LGNNRFSGNIPSLLGNGFVGLRILSLRSNAFSGEIPSKLSNLSSLQVLDLAENNLTGSIP 780
           L     +  +   +      L  L L  N     +P     L +L VLD++ N LT S+P
Sbjct: 62  LDRAELT-KLQ--VDGTLPVLGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLT-SLP 116

Query: 781 GSVGD-LKAMAHVQNIVKYLLFGRYRGIYYEENLVINTKGSSKDTPRLFHFIDLSGNNLH 839
                 L  +       + L                                 L GN L 
Sbjct: 117 LGALRGLGEL-------QEL--------------------------------YLKGNELK 137

Query: 840 GDFPTQLTKLVGLVVLNLSRNHIGGQIPENI-SGLHQLASLDLSSNNLSGGIPSSLSSLS 898
              P  LT    L  L+L+ N++  ++P  + +GL  L +L L  N+L   IP       
Sbjct: 138 TLPPGLLTPTPKLEKLSLANNNL-TELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSH 195

Query: 899 FLGYINLSRN 908
            L +  L  N
Sbjct: 196 LLPFAFLHGN 205

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 72.8 bits (179), Expect = 5e-14
 Identities = 55/188 (29%), Positives = 72/188 (38%), Gaps = 17/188 (9%)

Query: 300 QILNFASNKLHGKLPSSVANMTSLTNFDLFDKKVEGGIPSSIARLCYLKEFDLSGNNLTG 359
            IL+ + N L+    +++   T LT  +L   ++   +      L  L   DLS N L  
Sbjct: 34  TILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTK-LQVD-GTLPVLGTLDLSHNQLQ- 90

Query: 360 SLPEILQGTDLCVSSNSPLPSLISMRLGNNHLKGKLPE-WLSQLENLVELTLSYNLLQGP 418
           SLP + Q           LP+L  + +  N L   LP   L  L  L EL L  N L+  
Sbjct: 91  SLPLLGQT----------LPALTVLDVSFNRLT-SLPLGALRGLGELQELYLKGNELKTL 139

Query: 419 IPASLGNLKNLTKLNLPGNQLNGTLPETLGSLPELSVLDVSSNSLTGIISEIHFSRLSKL 478
            P  L     L KL+L  N L       L  L  L  L +  NSL  I     F     L
Sbjct: 140 PPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYTIPKGF-FGSHL-L 197

Query: 479 KFLGLSSN 486
            F  L  N
Sbjct: 198 PFAFLHGN 205

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 70.9 bits (174), Expect = 2e-13
 Identities = 43/156 (27%), Positives = 63/156 (40%), Gaps = 19/156 (12%)

Query: 344 LCYLKEFDLSGNNLTGSLP-------EIL-----QGTDLCVSSNSPLPSLISMRLGNNHL 391
           +    E +    NLT +LP        IL           +++  P   L  + L    L
Sbjct: 9   VASHLEVNCDKRNLT-ALPPDLPKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAEL 67

Query: 392 KGKLPEWLSQLENLVELTLSYNLLQGPIPASLGNLKNLTKLNLPGNQLNGTLPE-TLGSL 450
             KL      L  L  L LS+N LQ  +P     L  LT L++  N+L  +LP   L  L
Sbjct: 68  T-KLQVD-GTLPVLGTLDLSHNQLQS-LPLLGQTLPALTVLDVSFNRLT-SLPLGALRGL 123

Query: 451 PELSVLDVSSNSLTGIISEIHFSRLSKLKFLGLSSN 486
            EL  L +  N L  +   +  +   KL+ L L++N
Sbjct: 124 GELQELYLKGNELKTLPPGL-LTPTPKLEKLSLANN 158

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 59.3 bits (144), Expect = 1e-09
 Identities = 40/204 (19%), Positives = 62/204 (30%), Gaps = 48/204 (23%)

Query: 709 SFQNLTSLETLDLGNNRFSGNIPSLLGNGFVGLRILSLRSNAFSGEIPSKLSNLSSLQVL 768
               + S   ++      +  +P    +      IL L  N       + L   + L  L
Sbjct: 5   EVSKVASHLEVNCDKRNLT-ALPP---DLPKDTTILHLSENLLYTFSLATLMPYTRLTQL 60

Query: 769 DLAENNLTGSIPGSVGDLKAMAHVQNIVKYLLFGRYRGIYYEENLVINTKGSSKDTPRLF 828
           +L    LT  +    G L  +  +                                    
Sbjct: 61  NLDRAELT-KLQVD-GTLPVLGTL------------------------------------ 82

Query: 829 HFIDLSGNNLHGDFPTQLTKLVGLVVLNLSRNHIGGQIPENI-SGLHQLASLDLSSNNLS 887
              DLS N L    P     L  L VL++S N +   +P     GL +L  L L  N L 
Sbjct: 83  ---DLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLT-SLPLGALRGLGELQELYLKGNELK 137

Query: 888 GGIPSSLSSLSFLGYINLSRNQLS 911
              P  L+    L  ++L+ N L+
Sbjct: 138 TLPPGLLTPTPKLEKLSLANNNLT 161

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 53.2 bits (128), Expect = 2e-07
 Identities = 57/243 (23%), Positives = 78/243 (32%), Gaps = 66/243 (27%)

Query: 196 NLP-NLTELHLSVCGLTGSITSITPVNLTSPAVLDLSLNHFNSLFPNWLVNISTLVYVDL 254
           +LP + T LHLS   L  + +  T +  T    L+L       L  +    +  L  +DL
Sbjct: 28  DLPKDTTILHLSENLLY-TFSLATLMPYTRLTQLNLDRAELTKLQVDG--TLPVLGTLDL 84

Query: 255 SDCDLYGRIPIGFGELPNLQYLSLAGNNNLSGSCSQLFRGSWKKIQILNFASNKLHGKLP 314
           S   L   +P+    LP L  L ++ N                ++             LP
Sbjct: 85  SHNQL-QSLPLLGQTLPALTVLDVSFN----------------RLT-----------SLP 116

Query: 315 SSVANMTSLTNFDLFDKKVEGGIPSSIARLCYLKEFDLSGNNLTGSLPEILQGTDLCVSS 374
                                        L  L+E  L GN L  +LP            
Sbjct: 117 LGA-----------LRG------------LGELQELYLKGNELK-TLPP---------GL 143

Query: 375 NSPLPSLISMRLGNNHLKGKLPEWLSQLENLVELTLSYNLLQGPIPASLGNLKNLTKLNL 434
            +P P L  + L NN+L       L+ LENL  L L  N L   IP        L    L
Sbjct: 144 LTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYT-IPKGFFGSHLLPFAFL 202

Query: 435 PGN 437
            GN
Sbjct: 203 HGN 205

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 49.7 bits (119), Expect = 2e-06
 Identities = 42/188 (22%), Positives = 66/188 (35%), Gaps = 19/188 (10%)

Query: 98  LEYLDLSFNTFNDIP--IPEFLGSLENLQYLNLSEAGFTGVVPSSLGNLHRLQYFDVSAE 155
              ++        +P  +P+      +   L+LSE        ++L    RL   +    
Sbjct: 12  HLEVNCDKRNLTALPPDLPK------DTTILHLSENLLYTFSLATLMPYTRLTQLN---- 61

Query: 156 LFALSADSLDWLTGLVSLKHLAMNRVDLSLVGSEWLGILKNLPNLTELHLSVCGLTGSIT 215
           L       L     L  L  L ++   L  +      + + LP LT L +S   LT S+ 
Sbjct: 62  LDRAELTKLQVDGTLPVLGTLDLSHNQLQSLPL----LGQTLPALTVLDVSFNRLT-SLP 116

Query: 216 SITPVNLTSPAVLDLSLNHFNSLFPNWLVNISTLVYVDLSDCDLYGRIPIG-FGELPNLQ 274
                 L     L L  N   +L P  L     L  + L++ +L   +P G    L NL 
Sbjct: 117 LGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNL-TELPAGLLNGLENLD 175

Query: 275 YLSLAGNN 282
            L L  N+
Sbjct: 176 TLLLQENS 183

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 49.3 bits (118), Expect = 3e-06
 Identities = 56/249 (22%), Positives = 84/249 (33%), Gaps = 54/249 (21%)

Query: 404 NLVELTLSYNLLQGPIPASLGNLKNLTKLNLPGNQLNGTLPETLGSLPELSVLDVSSNSL 463
           + +E+      L   +P  L   K+ T L+L  N L      TL     L+ L++    L
Sbjct: 11  SHLEVNCDKRNLTA-LPPDL--PKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAEL 67

Query: 464 TGIISEIHFSRLSKLKFLGLSSNSFILNVSSSWIPPFQVQSLNMRSCQLGPSFPSWLKTQ 523
           T +        L  L  L LS N              Q+QSL        P     L   
Sbjct: 68  TKLQV---DGTLPVLGTLDLSHN--------------QLQSL--------PLLGQTLPAL 102

Query: 524 QGVSFLDFSNASISGPIPNWFWDISSKLSLLNVSLNQLQGQLPNPLNIAPFADVDFRSNL 583
                LD S   ++  +P        +L  L +  N+L+  LP          +      
Sbjct: 103 T---VLDVSFNRLTS-LPLGALRGLGELQELYLKGNELK-TLP--------PGL-LT--- 145

Query: 584 LEGPIPLPIVEIELLDLSNNHFSGPIPQNISGSMPNLIFLSVSGNRLTGKIPGSIGEMQL 643
                  P  ++E L L+NN+ +  +P  +   + NL  L +  N L   IP       L
Sbjct: 146 -------PTPKLEKLSLANNNLTE-LPAGLLNGLENLDTLLLQENSLYT-IPKGFFGSHL 196

Query: 644 LQVIDLSRN 652
           L    L  N
Sbjct: 197 LPFAFLHGN 205

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 87.1 bits (216), Expect = 1e-18
 Identities = 48/295 (16%), Positives = 107/295 (36%), Gaps = 58/295 (19%)

Query: 616 SMPNLIFLSVSGNRLTGKIPGSIGEMQLLQVIDLSRNSISGSISSSIGNCTFLKVLDLSY 675
           ++ N I ++   + +T  +     ++  +  +      ++ +I   +     L  L+L  
Sbjct: 17  ALANAIKIAAGKSNVTDTVT--QADLDGITTLSAFGTGVT-TIEG-VQYLNNLIGLELKD 72

Query: 676 SSLSGVIPASLGQLTRLQSLHLNNNKLTGNLPSSFQNLTSLETLDLGNNRFSGNIPSLLG 735
           + ++ + P  L  LT++  L L+ N L     S+   L S++TLDL + + + ++  L  
Sbjct: 73  NQITDLAP--LKNLTKITELELSGNPLKN--VSAIAGLQSIKTLDLTSTQIT-DVTPL-- 125

Query: 736 NGFVGLRILSLRSNAFSGEIPSKLSNLSSLQVLDLAENNLTGSIPGSVGDLKAMAHVQNI 795
            G   L++L L  N  +  I   L+ L++LQ L +    ++        DL  +A++  +
Sbjct: 126 AGLSNLQVLYLDLNQIT-NISP-LAGLTNLQYLSIGNAQVS--------DLTPLANLSKL 175

Query: 796 VKYLLFGRYRGIYYEENLVINTKGSSKDTPRLFHFIDLSGNNLHGDFPTQLTKLVGLVVL 855
                                              +    N +  D    L  L  L+ +
Sbjct: 176 TT---------------------------------LKADDNKIS-DISP-LASLPNLIEV 200

Query: 856 NLSRNHIGGQIPENISGLHQLASLDLSSNNLSGGIPSSLSSLSFLGYINLSRNQL 910
           +L  N I       ++    L  + L++  ++       ++L     +       
Sbjct: 201 HLKNNQISDV--SPLANTSNLFIVTLTNQTITNQPVFYNNNLVVPNVVKGPSGAP 253

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 81.3 bits (201), Expect = 1e-16
 Identities = 50/274 (18%), Positives = 100/274 (36%), Gaps = 58/274 (21%)

Query: 644 LQVIDLSRNSISGSISSSIGNCTFLKVLDLSYSSLSGVIPASLGQLTRLQSLHLNNNKLT 703
              I   +++++ +   +  +   +  L    + ++ +    +  L  L  L L +N++T
Sbjct: 21  AIKIAAGKSNVTDT--VTQADLDGITTLSAFGTGVTTIEG--VQYLNNLIGLELKDNQIT 76

Query: 704 GNLPSSFQNLTSLETLDLGNNRFSGNIPSLLGNGFVGLRILSLRSNAFSGEIPSKLSNLS 763
               +  +NLT +  L+L  N    N+ ++   G   ++ L L S   +   P  L+ LS
Sbjct: 77  D--LAPLKNLTKITELELSGNPLK-NVSAI--AGLQSIKTLDLTSTQITDVTP--LAGLS 129

Query: 764 SLQVLDLAENNLTGSIPGSVGDLKAMAHVQNIVKYLLFGRYRGIYYEENLVINTKGSSKD 823
           +LQVL L  N +T        ++  +A + N+                            
Sbjct: 130 NLQVLYLDLNQIT--------NISPLAGLTNLQY-------------------------- 155

Query: 824 TPRLFHFIDLSGNNLHGDFPTQLTKLVGLVVLNLSRNHIGGQIPENISGLHQLASLDLSS 883
                  + +    +    P  L  L  L  L    N I       ++ L  L  + L +
Sbjct: 156 -------LSIGNAQVSDLTP--LANLSKLTTLKADDNKISD--ISPLASLPNLIEVHLKN 204

Query: 884 NNLSGGIPSSLSSLSFLGYINLSRNQLSGKIPFE 917
           N +S    S L++ S L  + L+   ++ +  F 
Sbjct: 205 NQISD--VSPLANTSNLFIVTLTNQTITNQPVFY 236

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 73.2 bits (180), Expect = 5e-14
 Identities = 56/303 (18%), Positives = 113/303 (37%), Gaps = 42/303 (13%)

Query: 167 LTGLVSLKHLAMNRVDLSLVGSEWLGILKNLPNLTELHLSVCGLTGSITSITPV-NLTSP 225
              L +   +A  + +++   +       +L  +T L     G    +T+I  V  L + 
Sbjct: 15  DPALANAIKIAAGKSNVTDTVT-----QADLDGITTLSAFGTG----VTTIEGVQYLNNL 65

Query: 226 AVLDLSLNHFNSLFPNWLVNISTLVYVDLSDCDLYGRIPIGFGELPNLQYLSLAGNNNLS 285
             L+L  N    L P  L N++ +  ++LS   L  +       L +++ L L  +  ++
Sbjct: 66  IGLELKDNQITDLAP--LKNLTKITELELSGNPL--KNVSAIAGLQSIKTLDL-TSTQIT 120

Query: 286 G--SCSQLFRGSWKKIQILNFASNKLHGKLPSSVANMTSLTNFDLFDKKVEGGIPSSIAR 343
                + L       +Q+L    N++     S +A +T+L    + + +V     + +A 
Sbjct: 121 DVTPLAGL-----SNLQVLYLDLNQI--TNISPLAGLTNLQYLSIGNAQVSD--LTPLAN 171

Query: 344 LCYLKEFDLSGNNLTGSLPEILQGTDLCVSSNSPLPSLISMRLGNNHLKGKLPEWLSQLE 403
           L  L       N ++  +  +           + LP+LI + L NN +    P  L+   
Sbjct: 172 LSKLTTLKADDNKIS-DISPL-----------ASLPNLIEVHLKNNQISDVSP--LANTS 217

Query: 404 NLVELTLSYNLLQGPIPASLGNLKNLTKLNLPGNQLNGTLPETLGSLPELSVLDVSSNSL 463
           NL  +TL+   +         NL     +  P        P T+      +  +++ N  
Sbjct: 218 NLFIVTLTNQTITNQPVFYNNNLVVPNVVKGPSGAP--IAPATISDNGTYASPNLTWNLT 275

Query: 464 TGI 466
           + I
Sbjct: 276 SFI 278

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 70.1 bits (172), Expect = 5e-13
 Identities = 45/255 (17%), Positives = 86/255 (33%), Gaps = 56/255 (21%)

Query: 664 NCTFLKVLDLSYSSLSGVIPASLGQLTRLQSLHLNNNKLTGNLPSSFQNLTSLETLDLGN 723
                  +    S+++  +      L  + +L      +T  +    Q L +L  L+L +
Sbjct: 17  ALANAIKIAAGKSNVTDTVT--QADLDGITTLSAFGTGVT-TI-EGVQYLNNLIGLELKD 72

Query: 724 NRFSGNIPSLLGNGFVGLRILSLRSNAFSGEIPSKLSNLSSLQVLDLAENNLTGSIPGSV 783
           N+ + ++  L       +  L L  N       S ++ L S++ LDL    +T       
Sbjct: 73  NQIT-DLAPL--KNLTKITELELSGNPLK--NVSAIAGLQSIKTLDLTSTQIT------- 120

Query: 784 GDLKAMAHVQNIVKYLLFGRYRGIYYEENLVINTKGSSKDTPRLFHFIDLSGNNLHGDFP 843
            D+  +A + N+                                   + L  N +  +  
Sbjct: 121 -DVTPLAGLSNLQV---------------------------------LYLDLNQIT-NIS 145

Query: 844 TQLTKLVGLVVLNLSRNHIGGQIPENISGLHQLASLDLSSNNLSGGIPSSLSSLSFLGYI 903
             L  L  L  L++    +       ++ L +L +L    N +S    S L+SL  L  +
Sbjct: 146 P-LAGLTNLQYLSIGNAQV--SDLTPLANLSKLTTLKADDNKISD--ISPLASLPNLIEV 200

Query: 904 NLSRNQLSGKIPFEG 918
           +L  NQ+S   P   
Sbjct: 201 HLKNNQISDVSPLAN 215

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 68.9 bits (169), Expect = 1e-12
 Identities = 52/309 (16%), Positives = 99/309 (32%), Gaps = 79/309 (25%)

Query: 423 LGNLKNLTKLNLPGNQLNGTLPETLGSLPELSVLDVSSNSLTGIISEIHFSRLSKLKFLG 482
              L N  K+    + +      T   L  ++ L      +T I        L+ L  L 
Sbjct: 15  DPALANAIKIAAGKSNVTD--TVTQADLDGITTLSAFGTGVTTIE---GVQYLNNLIGLE 69

Query: 483 LSSNSFILNVSSSWIPPFQVQSLNMRSCQLGPSFPSWLKTQQGVSFLDFSNASISGPIPN 542
           L  N  I +++                          LK    ++ L+ S   +      
Sbjct: 70  LKDNQ-ITDLAP-------------------------LKNLTKITELELSGNPLK----- 98

Query: 543 WFWDISS-----KLSLLNVSLNQLQGQLPNPLNIAPFADVDFRSNLLEGPIPLPIVEIEL 597
              ++S+      +  L+++  Q+              DV   + L           +++
Sbjct: 99  ---NVSAIAGLQSIKTLDLTSTQIT-------------DVTPLAGL---------SNLQV 133

Query: 598 LDLSNNHFSGPIPQNISG--SMPNLIFLSVSGNRLTGKIPGSIGEMQLLQVIDLSRNSIS 655
           L L  N  +     NIS    + NL +LS+   +++  +   +  +  L  +    N IS
Sbjct: 134 LYLDLNQIT-----NISPLAGLTNLQYLSIGNAQVS-DLTP-LANLSKLTTLKADDNKIS 186

Query: 656 GSISSSIGNCTFLKVLDLSYSSLSGVIPASLGQLTRLQSLHLNNNKLTGNLPSSFQNLTS 715
             IS  + +   L  + L  + +S V P  L   + L  + L N  +T        NL  
Sbjct: 187 -DISP-LASLPNLIEVHLKNNQISDVSP--LANTSNLFIVTLTNQTITNQPVFYNNNLVV 242

Query: 716 LETLDLGNN 724
              +   + 
Sbjct: 243 PNVVKGPSG 251

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 67.0 bits (164), Expect = 5e-12
 Identities = 43/226 (19%), Positives = 77/226 (34%), Gaps = 54/226 (23%)

Query: 686 LGQLTRLQSLHLNNNKLTGNLPSSFQNLTSLETLDLGNNRFSGNIPSLLGNGFVGLRILS 745
              L     +    + +T     +  +L  + TL       +  I  +       L  L 
Sbjct: 15  DPALANAIKIAAGKSNVTD--TVTQADLDGITTLSAFGTGVT-TIEGV--QYLNNLIGLE 69

Query: 746 LRSNAFSGEIPSKLSNLSSLQVLDLAENNLTGSIPGSVGDLKAMAHVQNIVKYLLFGRYR 805
           L+ N  +    + L NL+ +  L+L+ N L         ++ A+A +Q+I          
Sbjct: 70  LKDNQITD--LAPLKNLTKITELELSGNPLK--------NVSAIAGLQSIKT-------- 111

Query: 806 GIYYEENLVINTKGSSKDTPRLFHFIDLSGNNLHGDFPTQLTKLVGLVVLNLSRNHIGGQ 865
                                    +DL+   +    P  L  L  L VL L  N I   
Sbjct: 112 -------------------------LDLTSTQITDVTP--LAGLSNLQVLYLDLNQI--T 142

Query: 866 IPENISGLHQLASLDLSSNNLSGGIPSSLSSLSFLGYINLSRNQLS 911
               ++GL  L  L + +  +S    + L++LS L  +    N++S
Sbjct: 143 NISPLAGLTNLQYLSIGNAQVSD--LTPLANLSKLTTLKADDNKIS 186

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 59.7 bits (145), Expect = 1e-09
 Identities = 61/342 (17%), Positives = 110/342 (32%), Gaps = 69/342 (20%)

Query: 80  INLGNPYHVVNSDSSGSLLEYLDLSFNTFNDIPIPEFLGSLENLQYLNLSEAGFTGVVPS 139
           I      +V+  D + +    +    +   D         L+ +  L+    G T +   
Sbjct: 3   ITQPTAINVIFPDPALANAIKIAAGKSNVTDT---VTQADLDGITTLSAFGTGVTTI--E 57

Query: 140 SLGNLHRLQYFDVSAELFALSADSLDWLTGLVSLKHLAMNRVDLSLVGSEWLGILKNLPN 199
            +  L+ L   ++                          N++         L  LKNL  
Sbjct: 58  GVQYLNNLIGLELKD------------------------NQI-------TDLAPLKNLTK 86

Query: 200 LTELHLSVCGLTGSITSITPV-NLTSPAVLDLSLNHFNSLFPNWLVNISTLVYVDLSDCD 258
           +TEL LS       + +++ +  L S   LDL+      + P  L  +S L  + L    
Sbjct: 87  ITELELSGNP----LKNVSAIAGLQSIKTLDLTSTQITDVTP--LAGLSNLQVLYLDLNQ 140

Query: 259 LYGRIPIGFGELPNLQYLSLAGNN--NLSGSCSQLFRGSWKKIQILNFASNKLHGKLPSS 316
           +          L NLQYLS+      +L+   + L      K+  L    NK+     S 
Sbjct: 141 I--TNISPLAGLTNLQYLSIGNAQVSDLTP-LANL-----SKLTTLKADDNKI--SDISP 190

Query: 317 VANMTSLTNFDLFDKKVEGGIPSSIARLCYLKEFDLSGNNLTGSLPEILQGTDLCVSSNS 376
           +A++ +L    L + ++     S +A    L    L+   +          T+  V  N+
Sbjct: 191 LASLPNLIEVHLKNNQISD--VSPLANTSNLFIVTLTNQTI----------TNQPVFYNN 238

Query: 377 PLPSLISMRLGNNHLKGKLPEWLSQLENLVELTLSYNLLQGP 418
            L       +         P  +S         L++NL    
Sbjct: 239 NLVVPNV--VKGPSGAPIAPATISDNGTYASPNLTWNLTSFI 278

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 44.7 bits (106), Expect = 8e-05
 Identities = 31/163 (19%), Positives = 61/163 (37%), Gaps = 27/163 (16%)

Query: 757 SKLSNLSSLQVLDLAENNLTGSIPGSVGDLKAMAHVQNI-VKYLLFGRYRGIYYEENLVI 815
                L++   +   ++N+T ++         +  +  +           G+ Y  NL+ 
Sbjct: 13  FPDPALANAIKIAAGKSNVTDTVT-----QADLDGITTLSAFGTGVTTIEGVQYLNNLI- 66

Query: 816 NTKGSSKDTPRLFHFIDLSGNNLHGDFPTQLTKLVGLVVLNLSRNHIGGQIPENISGLHQ 875
                          ++L  N +       L  L  +  L LS N +  +    I+GL  
Sbjct: 67  --------------GLELKDNQITD--LAPLKNLTKITELELSGNPL--KNVSAIAGLQS 108

Query: 876 LASLDLSSNNLSGGIPSSLSSLSFLGYINLSRNQLSGKIPFEG 918
           + +LDL+S  ++    + L+ LS L  + L  NQ++   P  G
Sbjct: 109 IKTLDLTSTQITD--VTPLAGLSNLQVLYLDLNQITNISPLAG 149

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 87.6 bits (217), Expect = 2e-18
 Identities = 40/185 (21%), Positives = 65/185 (35%), Gaps = 28/185 (15%)

Query: 609 IPQNISGSMPNLIFLSVSGNRLTGKIPGSI-GEMQLLQVIDLSRNSISGSISSSI-GNCT 666
           +PQ++         L +S N L+          +  L  + LS N ++  ISS       
Sbjct: 33  VPQSLP---SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLN-FISSEAFVPVP 88

Query: 667 FLKVLDLSYSSLSGVIPASLGQLTRLQSLHLNNNKLTGNLPSSFQNLTSLETLDLGNNRF 726
            L+ LDLS + L  +       L  L+ L L NN +     ++F+++  L+ L L  N  
Sbjct: 89  NLRYLDLSSNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQN-- 146

Query: 727 SGNIPSLLGNGFVGLRILSLRSNAFSGEIPSKLSNLSSLQVLDLAENNLTGSIPGSVGDL 786
                          +I                + L  L +LDL+ N L       +  L
Sbjct: 147 ---------------QISRFPVELIKD-----GNKLPKLMLLDLSSNKLKKLPLTDLQKL 186

Query: 787 KAMAH 791
            A   
Sbjct: 187 PAWVK 191

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 79.9 bits (197), Expect = 5e-16
 Identities = 43/155 (27%), Positives = 62/155 (40%), Gaps = 17/155 (10%)

Query: 336 GIPSSIARLCYLKEFDLSGNNLTGSLPEILQGTDLCVSSNSPLPSLISMRLGNNHLKGKL 395
            +PS  A L      DLS NNL+     +           + L +L S+ L +NHL    
Sbjct: 36  SLPSYTALL------DLSHNNLS----RLRAEWTP-----TRLTNLHSLLLSHNHLNFIS 80

Query: 396 PEWLSQLENLVELTLSYNLLQGPIPASLGNLKNLTKLNLPGNQLNGTLPETLGSLPELSV 455
            E    + NL  L LS N L         +L+ L  L L  N +          + +L  
Sbjct: 81  SEAFVPVPNLRYLDLSSNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQK 140

Query: 456 LDVSSNSLTGIISEI--HFSRLSKLKFLGLSSNSF 488
           L +S N ++    E+    ++L KL  L LSSN  
Sbjct: 141 LYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKL 175

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 73.3 bits (180), Expect = 7e-14
 Identities = 39/158 (24%), Positives = 67/158 (42%), Gaps = 34/158 (21%)

Query: 626 SGNRLTGKIPGSIGEMQLLQVIDLSRNSISGSISSSI--GNCTFLKVLDLSYSSLSGVIP 683
           S  +L   +P S+       ++DLS N++S  + +       T L  L LS++ L+ +  
Sbjct: 26  SKQQLP-NVPQSLPS--YTALLDLSHNNLS-RLRAEWTPTRLTNLHSLLLSHNHLNFISS 81

Query: 684 ASLGQLTRLQSLHLNNNKLTGNLPS-SFQNLTSLETLDLGNNRFSGNIPSLLGNGFVGLR 742
            +   +  L+ L L++N L   L    F +L +LE L L NN                  
Sbjct: 82  EAFVPVPNLRYLDLSSNHLH-TLDEFLFSDLQALEVLLLYNNH----------------- 123

Query: 743 ILSLRSNAFSGEIPSKLSNLSSLQVLDLAENNLTGSIP 780
           I+ +  NAF          ++ LQ L L++N ++   P
Sbjct: 124 IVVVDRNAFED--------MAQLQKLYLSQNQIS-RFP 152

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 67.2 bits (164), Expect = 8e-12
 Identities = 37/137 (27%), Positives = 58/137 (42%), Gaps = 8/137 (5%)

Query: 596 ELLDLSNNHFSGPIPQNISGSMPNLIFLSVSGNRLTGKIPGSIGEMQLLQVIDLSRNSIS 655
             L LS+NH +  I       +PNL +L +S N L         ++Q L+V+ L  N I 
Sbjct: 67  HSLLLSHNHLNF-ISSEAFVPVPNLRYLDLSSNHLHTLDEFLFSDLQALEVLLLYNNHIV 125

Query: 656 GSISSSI-GNCTFLKVLDLSYSSLSGVIP---ASLGQLTRLQSLHLNNNKLTGNLPSSFQ 711
             +  +   +   L+ L LS + +S           +L +L  L L++NKL     +  Q
Sbjct: 126 -VVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLKKLPLTDLQ 184

Query: 712 NLTSL--ETLDLGNNRF 726
            L +     L L NN  
Sbjct: 185 KLPAWVKNGLYLHNNPL 201

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 65.2 bits (159), Expect = 3e-11
 Identities = 51/253 (20%), Positives = 83/253 (32%), Gaps = 83/253 (32%)

Query: 669 KVLDLSYSSLSGV---IPASLGQLTRLQSLHLNNNKLTGNLPS--SFQNLTSLETLDLGN 723
            +L  S   L  V   +P+          L L++N L+  L +  +   LT+L +L L +
Sbjct: 21  NILSCSKQQLPNVPQSLPSYT------ALLDLSHNNLS-RLRAEWTPTRLTNLHSLLLSH 73

Query: 724 NRFSGNIPSLLGNGFVGLRILSLRSNAFSGEIPSKLSNLSSLQVLDLAENNLTGSIPGSV 783
           N                  +  + S AF          + +L+ LDL+ N+L  ++   +
Sbjct: 74  NH-----------------LNFISSEAFVP--------VPNLRYLDLSSNHLH-TLDEFL 107

Query: 784 GDLKAMAHVQNIVKYLLFGRYRGIYYEENLVINTKGSSKDTPRLFHFIDLSGNNLHGDFP 843
                            F                     D   L   + L  N++     
Sbjct: 108 -----------------F--------------------SDLQAL-EVLLLYNNHIVVVDR 129

Query: 844 TQLTKLVGLVVLNLSRNHIGGQIPE----NISGLHQLASLDLSSNNLSGGIPSSLSSLSF 899
                +  L  L LS+N I  + P     + + L +L  LDLSSN L     + L  L  
Sbjct: 130 NAFEDMAQLQKLYLSQNQIS-RFPVELIKDGNKLPKLMLLDLSSNKLKKLPLTDLQKLPA 188

Query: 900 LG--YINLSRNQL 910
                + L  N L
Sbjct: 189 WVKNGLYLHNNPL 201

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 64.1 bits (156), Expect = 7e-11
 Identities = 40/176 (22%), Positives = 62/176 (35%), Gaps = 21/176 (11%)

Query: 98  LEYLDLSFNTFNDIPIPEFLGSLENLQYLNLSEAGFTGVVPSSLGNLHRLQYFDVSA-EL 156
              LDLS N  + +        L NL  L LS      +   +   +  L+Y D+S+  L
Sbjct: 41  TALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHL 100

Query: 157 FALSADSLDWLTGLVSLKHLAMNRVDLSLVGSEWLGILKNLPNLTELHLSVCGLT----G 212
             L          L +L+ L +    + +V        +++  L +L+LS   ++     
Sbjct: 101 HTLDEFLFS---DLQALEVLLLYNNHIVVVDR---NAFEDMAQLQKLYLSQNQISRFPVE 154

Query: 213 SITSITPVNLTSPAVLDLSLNHFNSLFPNWLVNISTLVYVDLS--------DCDLY 260
            I       L    +LDLS N    L    L  +   V   L         DC LY
Sbjct: 155 LIKDGN--KLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGLYLHNNPLECDCKLY 208

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 56.4 bits (136), Expect = 2e-08
 Identities = 46/204 (22%), Positives = 70/204 (34%), Gaps = 53/204 (25%)

Query: 715 SLETLDLGNNRFSGNIPSLLGNGFVGLRILSLRSNAFSGEIPSK--LSNLSSLQVLDLAE 772
           +   L     +   N+P  L        +L L  N  S  + ++   + L++L  L L+ 
Sbjct: 19  ASNILSCSKQQLP-NVPQSL---PSYTALLDLSHNNLS-RLRAEWTPTRLTNLHSLLLSH 73

Query: 773 NNLTGSIPGSVGDLKAMAHVQNIVKYLLFGRYRGIYYEENLVINTKGSSKDTPRLFHFID 832
           N+L   I                     F                       P L  ++D
Sbjct: 74  NHLN-FISSEA-----------------F--------------------VPVPNL-RYLD 94

Query: 833 LSGNNLHGDFPTQ-LTKLVGLVVLNLSRNHIGGQIPENI-SGLHQLASLDLSSNNLS--- 887
           LS N+LH        + L  L VL L  NHI   +  N    + QL  L LS N +S   
Sbjct: 95  LSSNHLH-TLDEFLFSDLQALEVLLLYNNHIV-VVDRNAFEDMAQLQKLYLSQNQISRFP 152

Query: 888 GGIPSSLSSLSFLGYINLSRNQLS 911
             +    + L  L  ++LS N+L 
Sbjct: 153 VELIKDGNKLPKLMLLDLSSNKLK 176

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 45.2 bits (107), Expect = 7e-05
 Identities = 47/218 (21%), Positives = 71/218 (32%), Gaps = 60/218 (27%)

Query: 196 NLP-NLTELHLSVCGLTGSITSITPVNLTSPAVLDLSLNHFNSLFPNWLVNISTLVYVDL 254
           +LP     L LS   L+      TP  LT+   L LS NH N +     V +  L Y+DL
Sbjct: 36  SLPSYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDL 95

Query: 255 SDCDLYGRIPIG-FGELPNLQYLSLAGNNNLSGSCSQLFRGSWKKIQILNFASNKLHGKL 313
           S   L   +    F +L  L+ L L  N                 I             +
Sbjct: 96  SSNHL-HTLDEFLFSDLQALEVLLLYNN----------------HIV-----------VV 127

Query: 314 PSSVANMTSLTNFDLFDKKVEGGIPSSIARLCYLKEFDLSGNNLTGSLPEILQGTDLCVS 373
             +            F+             +  L++  LS N ++   P         + 
Sbjct: 128 DRNA-----------FED------------MAQLQKLYLSQNQIS-RFPV---EL---IK 157

Query: 374 SNSPLPSLISMRLGNNHLKGKLPEWLSQLENLVELTLS 411
             + LP L+ + L +N LK      L +L   V+  L 
Sbjct: 158 DGNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGLY 195

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 86.8 bits (215), Expect = 2e-18
 Identities = 54/295 (18%), Positives = 96/295 (32%), Gaps = 56/295 (18%)

Query: 596 ELLDLSNNHFSGPIPQNISGSMPNLIFLSVSGNRLTGKIPGSIGEMQLLQVIDLSRNSIS 655
            +     +  +  IP ++     N I L     +L     G+      L+ I++S+N + 
Sbjct: 12  RVFLCQESKVTE-IPSDLP---RNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVL 67

Query: 656 GSISSSI-GNCTFLKVLDLSYS-SLSGVIPASLGQLTRLQSLHLNNNKLTGNLPSSFQNL 713
             I + +  N   L  + +  + +L  + P +   L  LQ L ++N  +         + 
Sbjct: 68  EVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHS 127

Query: 714 TSLETLDLGNNRFSGNIPSLLGNGFVGL----RILSLRSNAFSGEIPSKLSNLSSLQVLD 769
                LD+ +N    NI ++  N FVGL     IL L  N    EI +   N + L  L+
Sbjct: 128 LQKVLLDIQDNI---NIHTIERNSFVGLSFESVILWLNKNGIQ-EIHNSAFNGTQLDELN 183

Query: 770 LAENNLTGSIPGSVGDLKAMAHVQNIVKYLLFGRYRGIYYEENLVINTKGSSKDTPRLFH 829
           L++NN    +P                                                 
Sbjct: 184 LSDNNNLEELPND-----VFHGASGP---------------------------------V 205

Query: 830 FIDLSGNNLHGDFPTQLTKLVGLVVLNLSRNHIGGQIPENISGLHQLASLDLSSN 884
            +D+S   +H      L  L  L   +        ++P  +  L  L    L+  
Sbjct: 206 ILDISRTRIHSLPSYGLENLKKLRARSTYNLK---KLP-TLEKLVALMEASLTYP 256

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 77.2 bits (190), Expect = 3e-15
 Identities = 49/267 (18%), Positives = 78/267 (29%), Gaps = 22/267 (8%)

Query: 199 NLTELHLSVCGLTGSITSITPVNLTSPAVLDLSLNHFNSLFPNWLVNISTLVYVDLSDCD 258
           +          +T  I S  P N      L   L     +          L  +++S  D
Sbjct: 10  SNRVFLCQESKVT-EIPSDLPRNAIE---LRFVLTKLRVIQKGAFSGFGDLEKIEISQND 65

Query: 259 LYGRIPIG-FGELPNLQYLSLAGNNNLSGSCSQLFRGSWKKIQILNFASNKLHGKLPSSV 317
           +   I    F  LP L  + +   NNL     + F+     +Q L  ++  +        
Sbjct: 66  VLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNL-PNLQYLLISNTGIKHLPDVHK 124

Query: 318 ANMTSLTNFDLFDKKVEGGIPS-SIARLCY-LKEFDLSGNNLTGSLPEILQGTDLCVSSN 375
            +       D+ D      I   S   L +      L+ N +         GT L     
Sbjct: 125 IHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNSAFNGTQL----- 179

Query: 376 SPLPSLISMRLGNNHLKGKLPEWLSQLENLVELTLSYNLLQGPIPASLGNLKNLTKLNLP 435
                       NN+L+    +        V L +S   +       L NLK L   +  
Sbjct: 180 -----DELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYGLENLKKLRARSTY 234

Query: 436 GNQLNGTLPETLGSLPELSVLDVSSNS 462
             +    LP TL  L  L    ++  S
Sbjct: 235 NLK---KLP-TLEKLVALMEASLTYPS 257

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 76.4 bits (188), Expect = 6e-15
 Identities = 29/246 (11%), Positives = 66/246 (26%), Gaps = 45/246 (18%)

Query: 668 LKVLDLSYSSLSGVIPASLGQLTRLQSLHLNNNKLTGNLPSS-FQNLTSLETLDLGNNRF 726
              L    + L  +   +      L+ + ++ N +   + +  F NL  L  + +     
Sbjct: 32  AIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANN 91

Query: 727 SGNIPSLLGNGFVGLRILSLRSNAFSGEIPSKL-SNLSSLQVLDLAENNLTGSIPGSVGD 785
              I          L+ L + +      +P     +     +LD+ +N    +I      
Sbjct: 92  LLYINPEAFQNLPNLQYLLISNTGIK-HLPDVHKIHSLQKVLLDIQDNINIHTIE----- 145

Query: 786 LKAMAHVQNIVKYLLFGRYRGIYYEENLVINTKGSSKDTPRLFHFIDLSGNNLHGDFPTQ 845
                                           + S          + L+ N +     + 
Sbjct: 146 --------------------------------RNSFVGLSFESVILWLNKNGIQEIHNSA 173

Query: 846 LTKLVGLVVLNLSRNHIGGQIPENI-SGLHQLASLDLSSNNLS---GGIPSSLSSLSFLG 901
                   +     N++  ++P ++  G      LD+S   +         +L  L    
Sbjct: 174 FNGTQLDELNLSDNNNLE-ELPNDVFHGASGPVILDISRTRIHSLPSYGLENLKKLRARS 232

Query: 902 YINLSR 907
             NL +
Sbjct: 233 TYNLKK 238

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 71.4 bits (175), Expect = 3e-13
 Identities = 52/308 (16%), Positives = 98/308 (31%), Gaps = 75/308 (24%)

Query: 419 IPASLGNLKNLTKLNLPGNQLNGTLPETLGSLPELSVLDVSSNSLTGIISEIHFSRLSKL 478
           IP+ L   +N  +L     +L            +L  +++S N +  +I    FS L KL
Sbjct: 24  IPSDL--PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKL 81

Query: 479 KFLGLSSNSFILNVSSSWIPPFQVQSLNMRSCQLGPSFPSWLKTQQGVSFLDFSNASISG 538
             + +   + +      +I P   Q+L                                 
Sbjct: 82  HEIRIEKANNL-----LYINPEAFQNL--------------------------------- 103

Query: 539 PIPNWFWDISSKLSLLNVSLNQLQGQLPNPLNIAPFADVDFRSNLLEGPIPLPIVEIELL 598
                       L  L +S   ++  LP         DV    +L          +  LL
Sbjct: 104 ----------PNLQYLLISNTGIK-HLP---------DVHKIHSL----------QKVLL 133

Query: 599 DLSNNHFSGPIPQN-ISGSMPNLIFLSVSGNRLTGKIPGSIGEMQLLQVIDLSRNSISGS 657
           D+ +N     I +N   G     + L ++ N +      +    QL ++     N++   
Sbjct: 134 DIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNSAFNGTQLDELNLSDNNNLEEL 193

Query: 658 ISSSIGNCTFLKVLDLSYSSLSGVIPASLGQLTRLQSLHLNNNKLTGNLPSSFQNLTSLE 717
            +      +   +LD+S + +  +    L  L +L++    N K    LP + + L +L 
Sbjct: 194 PNDVFHGASGPVILDISRTRIHSLPSYGLENLKKLRARSTYNLK---KLP-TLEKLVALM 249

Query: 718 TLDLGNNR 725
              L    
Sbjct: 250 EASLTYPS 257

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 71.0 bits (174), Expect = 4e-13
 Identities = 44/225 (19%), Positives = 79/225 (35%), Gaps = 19/225 (8%)

Query: 192 GILKNLPNLTELHLSVCGLTGSITSITPVNLTSPAVLDLS-LNHFNSLFPNWLVNISTLV 250
           G      +L ++ +S   +   I +    NL     + +   N+   + P    N+  L 
Sbjct: 48  GAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQ 107

Query: 251 YVDLSDCDLYGRIPIG-FGELPNLQYLSLAGNNNLSGSCSQLFRGSWKKIQILNFASNKL 309
           Y+ +S+  +   +P            L +  N N+       F G   +  IL    N +
Sbjct: 108 YLLISNTGI-KHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGI 166

Query: 310 HGKLPSSVANMTSLTNFDLFDKKVEGGIPSSI-ARLCYLKEFDLSGNNLTGSLPEILQGT 368
             ++ +S  N T L   +L D      +P+ +          D+S   +       L+  
Sbjct: 167 Q-EIHNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYGLEN- 224

Query: 369 DLCVSSNSPLPSLISMRLGNNHLKGKLPEWLSQLENLVELTLSYN 413
                    L  L        +LK KLP  L +L  L+E +L+Y 
Sbjct: 225 ---------LKKL--RARSTYNLK-KLP-TLEKLVALMEASLTYP 256

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 69.1 bits (169), Expect = 2e-12
 Identities = 53/260 (20%), Positives = 97/260 (37%), Gaps = 22/260 (8%)

Query: 101 LDLSFNTFNDIPIPEFLGSLENLQYLNLSEAGFTGVVPSSLGNLHRLQYFDVS--AELFA 158
                +   +IP         N   L         +   +      L+  ++S    L  
Sbjct: 14  FLCQESKVTEIPS----DLPRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEV 69

Query: 159 LSADSLDWLTGLVSLKHLAMNRVDLSLVGSEWLGILKNLPNLTELHLSVCGLTGSITSIT 218
           + AD    L  L  ++    N   L  +        +NLPNL  L +S  G+   +  + 
Sbjct: 70  IEADVFSNLPKLHEIRIEKANN--LLYINP---EAFQNLPNLQYLLISNTGIK-HLPDVH 123

Query: 219 PVNLTSPAVLDLSLN-HFNSLFPNWLVNIST-LVYVDLSDCDLYGRIPIGFGELPNLQYL 276
            ++     +LD+  N + +++  N  V +S   V + L+   +   I         L  L
Sbjct: 124 KIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQ-EIHNSAFNGTQLDEL 182

Query: 277 SLAGNNNLSGSCSQLFRGSWKKIQILNFASNKLHGKLPSSV-ANMTSLTNFDLFDKKVEG 335
           +L+ NNNL    + +F G      IL+ +  ++H  LPS    N+  L     ++ K   
Sbjct: 183 NLSDNNNLEELPNDVFHG-ASGPVILDISRTRIH-SLPSYGLENLKKLRARSTYNLKK-- 238

Query: 336 GIPSSIARLCYLKEFDLSGN 355
            +P ++ +L  L E  L+  
Sbjct: 239 -LP-TLEKLVALMEASLTYP 256

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 68.7 bits (168), Expect = 2e-12
 Identities = 43/256 (16%), Positives = 83/256 (32%), Gaps = 52/256 (20%)

Query: 663 GNCT-FLKVLDLSYSSLSGVIPASLGQLTRLQSLHLNNNKLTGNLPSSFQNLTSLETLDL 721
             C    +V     S ++  IP+ L        L     KL      +F     LE +++
Sbjct: 5   RICHCSNRVFLCQESKVT-EIPSDL--PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEI 61

Query: 722 GNNRFSGNIPSLLGNGFVGLRILSL-RSNAFSGEIPSKLSNLSSLQVLDLAENNLTGSIP 780
             N     I + + +    L  + + ++N      P    NL +LQ L ++   +   +P
Sbjct: 62  SQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIK-HLP 120

Query: 781 GSVGDLKAMAHVQNIVKYLLFGRYRGIYYEENLVINTKGSSKDTPRLFHFIDLSGNN--- 837
                                                      + +    +D+  N    
Sbjct: 121 -------------------------------------DVHKIHSLQKVL-LDIQDNINIH 142

Query: 838 -LHGDFPTQLTKLVGLVVLNLSRNHIGGQIPENISGLHQLASLDLSSNNLSGGIPS-SLS 895
            +  +    L+     V+L L++N I  +I  +     QL  L+LS NN    +P+    
Sbjct: 143 TIERNSFVGLSFE--SVILWLNKNGIQ-EIHNSAFNGTQLDELNLSDNNNLEELPNDVFH 199

Query: 896 SLSFLGYINLSRNQLS 911
             S    +++SR ++ 
Sbjct: 200 GASGPVILDISRTRIH 215

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 67.5 bits (165), Expect = 5e-12
 Identities = 53/335 (15%), Positives = 99/335 (29%), Gaps = 88/335 (26%)

Query: 345 CYLKEFDLSGNNLTGSLPEILQGTDLCVSSNSPLPSLISMRLGNNHLKGKLPEWLSQLEN 404
           C  + F    + +T  +P  L              + I +R     L+       S   +
Sbjct: 9   CSNRVFLCQESKVT-EIPSDL------------PRNAIELRFVLTKLRVIQKGAFSGFGD 55

Query: 405 LVELTLSYNLLQGPIPAS-LGNLKNLTKLNLP-GNQLNGTLPETLGSLPELSVLDVSSNS 462
           L ++ +S N +   I A    NL  L ++ +   N L    PE   +LP L  L +S+  
Sbjct: 56  LEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTG 115

Query: 463 LTGIISEIHFSRLSKLKFLGLSSNSFILNVSSSWIPPFQVQSLNMRSCQLGPSFPSWLKT 522
           +   + ++H     +   L +  N  I  +                              
Sbjct: 116 IK-HLPDVHKIHSLQKVLLDIQDNINIHTIE----------------------------- 145

Query: 523 QQGVSFLDFSNASISGPIPNWFWDISSKLSLLNVSLNQLQGQLPNPLNIAPFADVDFRSN 582
                              N F  +S +  +L ++ N +Q        I   A   F   
Sbjct: 146 ------------------RNSFVGLSFESVILWLNKNGIQ-------EIHNSA---FNGT 177

Query: 583 LLEGPIPLPIVEIELLDLSNNHFSGPIPQNISGSMPNLIFLSVSGNRLTGKIPGSIGEMQ 642
            L+          EL    NN+    +P ++       + L +S  R+       +  ++
Sbjct: 178 QLD----------ELNLSDNNNLEE-LPNDVFHGASGPVILDISRTRIHSLPSYGLENLK 226

Query: 643 LLQVIDLSRNSISGSISSSIGNCTFLKVLDLSYSS 677
            L+           ++         L    L+Y S
Sbjct: 227 KLRARSTYNLKKLPTLE----KLVALMEASLTYPS 257

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 49.1 bits (117), Expect = 5e-06
 Identities = 38/190 (20%), Positives = 67/190 (35%), Gaps = 20/190 (10%)

Query: 98  LEYLDLS-FNTFNDIPIPEFLGSLENLQYLNLSEAGFTGVVPSSLGNLHRLQYFDVS--A 154
           L  + +   N    I  PE   +L NLQYL +S  G   +      +  +    D+    
Sbjct: 81  LHEIRIEKANNLLYIN-PEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNI 139

Query: 155 ELFALSADSLDWLTGLVSLKHLAMNRVDLSLVGSEWLGILKNLPNLTELHLSVCGLTGSI 214
            +  +  +S   L+    +  L  N   +  + +       N   L EL+LS      ++
Sbjct: 140 NIHTIERNSFVGLSFESVILWLNKNG--IQEIHNS----AFNGTQLDELNLS---DNNNL 190

Query: 215 TSITP---VNLTSPAVLDLSLNHFNSLFPNWLVNISTLVYVDLSDCDLYGRIPIGFGELP 271
             +        + P +LD+S    +SL    L N+  L      +     ++P    +L 
Sbjct: 191 EELPNDVFHGASGPVILDISRTRIHSLPSYGLENLKKLRARSTYN---LKKLPT-LEKLV 246

Query: 272 NLQYLSLAGN 281
            L   SL   
Sbjct: 247 ALMEASLTYP 256

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 48.3 bits (115), Expect = 8e-06
 Identities = 34/190 (17%), Positives = 62/190 (32%), Gaps = 9/190 (4%)

Query: 98  LEYLDLSFNTFNDIPIPEFLGSLENLQYLNLSEA-GFTGVVPSSLGNLHRLQYFDVSA-E 155
           LE +++S N   ++   +   +L  L  + + +A     + P +  NL  LQY  +S   
Sbjct: 56  LEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTG 115

Query: 156 LFALSADSLDWLTGLVSLKHLAMNRVDLSLVGSEWLGILKNLP-NLTELHLSVCGLTGSI 214
           +  L           V L  +  N    ++           L      L L+  G+   I
Sbjct: 116 IKHLPDVHKIHSLQKVLL-DIQDNINIHTIER----NSFVGLSFESVILWLNKNGIQ-EI 169

Query: 215 TSITPVNLTSPAVLDLSLNHFNSLFPNWLVNISTLVYVDLSDCDLYGRIPIGFGELPNLQ 274
            +          +     N+   L  +     S  V +D+S   ++     G   L  L+
Sbjct: 170 HNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYGLENLKKLR 229

Query: 275 YLSLAGNNNL 284
             S      L
Sbjct: 230 ARSTYNLKKL 239

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 85.4 bits (212), Expect = 2e-18
 Identities = 51/250 (20%), Positives = 85/250 (34%), Gaps = 50/250 (20%)

Query: 666 TFLKVLDLSYSSLSGVIPASLGQLTRLQSLHLNNNKLTGNLPSS-FQNLTSLETLDLGNN 724
              K LDLS++ L  +   S      LQ L L+  ++   +    +Q+L+ L TL L  N
Sbjct: 28  FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQ-TIEDGAYQSLSHLSTLILTGN 86

Query: 725 RFSGNIPSLLGNGFVGLRILSLRSNAFSGEIPSKL-SNLSSLQVLDLAENNLTGSIPGSV 783
               ++     +G   L+ L       +  + +    +L +L+ L++A N +  S     
Sbjct: 87  PIQ-SLALGAFSGLSSLQKLVAVETNLA-SLENFPIGHLKTLKELNVAHNLIQ-SFK--- 140

Query: 784 GDLKAMAHVQNIVKYLLFGRYRGIYYEENLVINTKGSSKDTPRLFHFIDLSGNNL----H 839
                                                  +   L H +DLS N +     
Sbjct: 141 ---------------------------------LPEYFSNLTNLEH-LDLSSNKIQSIYC 166

Query: 840 GDFPTQLTKLVGLVV-LNLSRNHIGGQIPENISGLHQLASLDLSSNNLSGGIPSSLSSLS 898
            D    L ++  L + L+LS N +   I        +L  L L +N L          L+
Sbjct: 167 TDL-RVLHQMPLLNLSLDLSLNPMN-FIQPGAFKEIRLKELALDTNQLKSVPDGIFDRLT 224

Query: 899 FLGYINLSRN 908
            L  I L  N
Sbjct: 225 SLQKIWLHTN 234

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 82.7 bits (205), Expect = 2e-17
 Identities = 53/216 (24%), Positives = 84/216 (38%), Gaps = 17/216 (7%)

Query: 587 PIPLPIVEIELLDLSNNHFSGPIPQNISGSMPNLIFLSVSGNRLTGKIPGSIGEMQLLQV 646
           P  LP    + LDLS N     +      S P L  L +S   +     G+   +  L  
Sbjct: 23  PDNLP-FSTKNLDLSFNPLRH-LGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLST 80

Query: 647 IDLSRNSISGSISSSI-GNCTFLKVLDLSYSSLSGVIPASLGQLTRLQSLHLNNNKLTG- 704
           + L+ N I  S++       + L+ L    ++L+ +    +G L  L+ L++ +N +   
Sbjct: 81  LILTGNPIQ-SLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSF 139

Query: 705 NLPSSFQNLTSLETLDLGNNRFSGNIPSLLGNGFVGLR-------ILSLRSNAFSGEIPS 757
            LP  F NLT+LE LDL +N+    I S+       L         L L  N  +  I  
Sbjct: 140 KLPEYFSNLTNLEHLDLSSNK----IQSIYCTDLRVLHQMPLLNLSLDLSLNPMN-FIQP 194

Query: 758 KLSNLSSLQVLDLAENNLTGSIPGSVGDLKAMAHVQ 793
                  L+ L L  N L     G    L ++  + 
Sbjct: 195 GAFKEIRLKELALDTNQLKSVPDGIFDRLTSLQKIW 230

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 76.2 bits (188), Expect = 3e-15
 Identities = 45/185 (24%), Positives = 68/185 (36%), Gaps = 20/185 (10%)

Query: 609 IPQNISGSMPNLIFLSVSGNRLTGKIPGSIGEMQLLQVIDLSRNSISGSISSSI-GNCTF 667
           IP N+     +   L +S N L      S      LQV+DLSR  I  +I      + + 
Sbjct: 22  IPDNLP---FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQ-TIEDGAYQSLSH 77

Query: 668 LKVLDLSYSSLSGVIPASLGQLTRLQSLHLNNNKLTGNLPSSFQNLTSLETLDLGNNRFS 727
           L  L L+ + +  +   +   L+ LQ L      L         +L +L+ L++ +N   
Sbjct: 78  LSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNL-- 135

Query: 728 GNIPSLLGNG-FVG---LRILSLRSNAFSGEIPSK-LSNLSSLQV----LDLAENNLTGS 778
             I S      F     L  L L SN     I    L  L  + +    LDL+ N +   
Sbjct: 136 --IQSFKLPEYFSNLTNLEHLDLSSNKIQ-SIYCTDLRVLHQMPLLNLSLDLSLNPMN-F 191

Query: 779 IPGSV 783
           I    
Sbjct: 192 IQPGA 196

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 75.8 bits (187), Expect = 5e-15
 Identities = 39/152 (25%), Positives = 57/152 (37%), Gaps = 18/152 (11%)

Query: 336 GIPSSIARLCYLKEFDLSGNNLTGSLPEILQGTDLCVSSNSPLPSLISMRLGNNHLKGKL 395
            +P S   L      DLS N L   L            S    P L  + L    ++  +
Sbjct: 25  NLPFSTKNL------DLSFNPLR-HLGS---------YSFFSFPELQVLDLSRCEIQ-TI 67

Query: 396 PEWL-SQLENLVELTLSYNLLQGPIPASLGNLKNLTKLNLPGNQLNGTLPETLGSLPELS 454
            +     L +L  L L+ N +Q     +   L +L KL      L       +G L  L 
Sbjct: 68  EDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLK 127

Query: 455 VLDVSSNSLTGIISEIHFSRLSKLKFLGLSSN 486
            L+V+ N +       +FS L+ L+ L LSSN
Sbjct: 128 ELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSN 159

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 75.4 bits (186), Expect = 5e-15
 Identities = 41/186 (22%), Positives = 78/186 (41%), Gaps = 14/186 (7%)

Query: 596 ELLDLSNNHFSGPIPQNISGSMPNLIFLSVSGNRLTGKIPGSIGEMQLLQVIDLSRNSIS 655
           ++LDLS       I      S+ +L  L ++GN +     G+   +  LQ +     +++
Sbjct: 55  QVLDLSRCEIQT-IEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLA 113

Query: 656 GSISSSI-GNCTFLKVLDLSYSSLSGVIPASL-GQLTRLQSLHLNNNKLTGNLPSSFQNL 713
            S+ +   G+   LK L+++++ +           LT L+ L L++NK+     +  + L
Sbjct: 114 -SLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVL 172

Query: 714 TSLE----TLDLGNNRFSGNIPSLLGNGFVGLR--ILSLRSNAFSGEIPSKLSNLSSLQV 767
             +     +LDL  N     +  +    F  +R   L+L +N            L+SLQ 
Sbjct: 173 HQMPLLNLSLDLSLN----PMNFIQPGAFKEIRLKELALDTNQLKSVPDGIFDRLTSLQK 228

Query: 768 LDLAEN 773
           + L  N
Sbjct: 229 IWLHTN 234

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 64.2 bits (157), Expect = 3e-11
 Identities = 56/256 (21%), Positives = 85/256 (33%), Gaps = 46/256 (17%)

Query: 213 SITSITPVNL-TSPAVLDLSLNHFNSLFPNWLVNISTLVYVDLSDCDLYGRIPIG-FGEL 270
           +   I P NL  S   LDLS N    L      +   L  +DLS C++   I  G +  L
Sbjct: 18  NFYKI-PDNLPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEI-QTIEDGAYQSL 75

Query: 271 PNLQYLSLAGNNNLSGSCSQLFRGSWKKIQILNFASNKLHGKLPSSVANMTSLTNFDLFD 330
            +L  L L   N +       F G    +Q L      L   L +       L       
Sbjct: 76  SHLSTLIL-TGNPIQSLALGAFSG-LSSLQKLVAVETNLA-SLENFPI--GHLKT----- 125

Query: 331 KKVEGGIPSSIARLCYLKEFDLSGNNLTGSLPEILQGTDLCVSSNSPLPSLISMRLGNNH 390
                           LKE +++ N +  S        +   +    L +L  + L +N 
Sbjct: 126 ----------------LKELNVAHNLIQ-SFKL----PEYFSN----LTNLEHLDLSSNK 160

Query: 391 LKGKLPE----WLSQLENL-VELTLSYNLLQGPIPASLGNLKNLTKLNLPGNQLNGTLPE 445
           ++  +       L Q+  L + L LS N +   I         L +L L  NQL      
Sbjct: 161 IQ-SIYCTDLRVLHQMPLLNLSLDLSLNPMNF-IQPGAFKEIRLKELALDTNQLKSVPDG 218

Query: 446 TLGSLPELSVLDVSSN 461
               L  L  + + +N
Sbjct: 219 IFDRLTSLQKIWLHTN 234

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 63.8 bits (156), Expect = 4e-11
 Identities = 41/215 (19%), Positives = 80/215 (37%), Gaps = 16/215 (7%)

Query: 122 NLQYLNLSEAGFTGVVPSSLGNLHRLQYFDVSA-ELFALSADSLDWLTGLVSLKHLAMNR 180
           + + L+LS      +   S  +   LQ  D+S  E+  +   +      L  L  L +  
Sbjct: 29  STKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQ---SLSHLSTLILTG 85

Query: 181 VDLSLVGSEWLGILKNLPNLTELHLSVCGLTGSITSITPVNLTSPAVLDLSLNHFNSL-F 239
             +  +     G    L +L +L      L  S+ +    +L +   L+++ N   S   
Sbjct: 86  NPIQSLAL---GAFSGLSSLQKLVAVETNLA-SLENFPIGHLKTLKELNVAHNLIQSFKL 141

Query: 240 PNWLVNISTLVYVDLSDCDLYGRIPIG-FGELPNLQYLSLA---GNNNLSGSCSQLFRGS 295
           P +  N++ L ++DLS   +   I       L  +  L+L+     N ++      F+  
Sbjct: 142 PEYFSNLTNLEHLDLSSNKI-QSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKE- 199

Query: 296 WKKIQILNFASNKLHGKLPSSVANMTSLTNFDLFD 330
             +++ L   +N+L          +TSL    L  
Sbjct: 200 -IRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHT 233

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 62.3 bits (152), Expect = 2e-10
 Identities = 45/227 (19%), Positives = 68/227 (29%), Gaps = 69/227 (30%)

Query: 690 TRLQSLHLNNNKLTGNLPSSFQNLTSLETLDLGNNRFSGNIPSLLGNGFVGLRILSLRSN 749
              ++L L+ N L      SF +   L+ LDL                     I ++   
Sbjct: 28  FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCE-----------------IQTIEDG 70

Query: 750 AFSGEIPSKLSNLSSLQVLDLAENNLTGSIPGSVGDLKAMAHVQNIVKYLLFGRYRGIYY 809
           A+          LS L  L L  N +  S+                              
Sbjct: 71  AYQS--------LSHLSTLILTGNPIQ-SLA----------------------------- 92

Query: 810 EENLVINTKGSSKDTPRLFHFIDLSGNNLHGDFPTQLTKLVGLVVLNLSRNHIGG-QIPE 868
                    G+      L   +     NL       +  L  L  LN++ N I   ++PE
Sbjct: 93  --------LGAFSGLSSL-QKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPE 143

Query: 869 NISGLHQLASLDLSSNNL---SGGIPSSLSSLSFLGY-INLSRNQLS 911
             S L  L  LDLSSN +          L  +  L   ++LS N ++
Sbjct: 144 YFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMN 190

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 57.3 bits (139), Expect = 6e-09
 Identities = 50/193 (25%), Positives = 68/193 (35%), Gaps = 21/193 (10%)

Query: 98  LEYLDLSFNTFNDIPIPEFLGSLENLQYLNLSEAGFTGVVPSSLGNLHRLQYFD-VSAEL 156
           L+ LDLS      I    +   L +L  L L+      +   +   L  LQ    V   L
Sbjct: 54  LQVLDLSRCEIQTIEDGAYQS-LSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNL 112

Query: 157 FALSADSLDWLTGLVSLKHLAMNRVDLSLVGSEWLGILKNLPNLTELHLSVCGLTGSITS 216
            +L    +     L +LK L +    +            NL NL  L LS       I S
Sbjct: 113 ASLENFPIG---HLKTLKELNVAHNLIQSFKLP--EYFSNLTNLEHLDLSSN----KIQS 163

Query: 217 ITP------VNLTSPAV-LDLSLNHFNSLFPNWLVNISTLVYVDLSDCDLYGRIPIG-FG 268
           I          +    + LDLSLN  N + P     I  L  + L    L   +P G F 
Sbjct: 164 IYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIR-LKELALDTNQL-KSVPDGIFD 221

Query: 269 ELPNLQYLSLAGN 281
            L +LQ + L  N
Sbjct: 222 RLTSLQKIWLHTN 234

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 86.6 bits (215), Expect = 7e-18
 Identities = 89/477 (18%), Positives = 142/477 (29%), Gaps = 117/477 (24%)

Query: 347 LKEFDLSGNNLT-GSLPEILQGTDLCVSSNSPLPSLISMRLGNNHLKGK----LPEWLSQ 401
           ++  D+    L+     E+L            L     +RL +  L       +   L  
Sbjct: 5   IQSLDIQCEELSDARWAELLPL----------LQQCQVVRLDDCGLTEARCKDISSALRV 54

Query: 402 LENLVELTLSYNLLQGPIPASLGN-LKN----LTKLNLPGNQLNGT----LPETLGSLPE 452
              L EL L  N L       +   L+     + KL+L    L G     L  TL +LP 
Sbjct: 55  NPALAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPT 114

Query: 453 LSVLDVSSNSLTGIISEIHFSRLSKLKFLGLSSNSFILNVSSSWIPPFQVQSLNMRSCQL 512
           L  L +S N     + +     L +    GL      L            + L +  C L
Sbjct: 115 LQELHLSDNL----LGDAGLQLLCE----GLLDPQCRL------------EKLQLEYCSL 154

Query: 513 GP----SFPSWLKTQQGVSFLDFSNASISGPIPNWFWDISSKLSLLNVSLNQLQGQLPNP 568
                    S L+ +     L  SN  I+                    +  L   L + 
Sbjct: 155 SAASCEPLASVLRAKPDFKELTVSNNDIN-----------------EAGVRVLCQGLKDS 197

Query: 569 LNIAPFADVDFRSNLLEGPIPLPIVEIELLDLSNNHFSGPIPQNIS---GSMPNLIFLSV 625
                         L              L L +   +    +++     S  +L  L++
Sbjct: 198 -----------PCQLEA------------LKLESCGVTSDNCRDLCGIVASKASLRELAL 234

Query: 626 SGNRLTGKIPGSIGEMQL-----LQVIDLSRNSIS----GSISSSIGNCTFLKVLDLSYS 676
             N+L       +    L     L+ + +    I+    G +   +     LK L L+ +
Sbjct: 235 GSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGN 294

Query: 677 SL--SGVI---PASLGQLTRLQSLHLNNNKLTG----NLPSSFQNLTSLETLDLGNNRFS 727
            L   G        L    +L+SL + +   T     +  S       L  L + NNR  
Sbjct: 295 ELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLE 354

Query: 728 GNIPSLLGNGF----VGLRILSLRSNAFSGE----IPSKLSNLSSLQVLDLAENNLT 776
                 L  G       LR+L L     S      + + L    SL+ LDL+ N L 
Sbjct: 355 DAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLG 411

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 85.4 bits (212), Expect = 2e-17
 Identities = 65/369 (17%), Positives = 120/369 (32%), Gaps = 67/369 (18%)

Query: 595 IELLDLSNNHFSGPIPQNIS---GSMPNLIFLSVSGNRLTGKIPGSIGEM-----QLLQV 646
            +++ L +   +    ++IS      P L  L++  N L       + +        +Q 
Sbjct: 30  CQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQTPSCKIQK 89

Query: 647 IDLSRNSIS----GSISSSIGNCTFLKVLDLSYSSLSGVIPASLGQL-----TRLQSLHL 697
           + L    ++    G +SS++     L+ L LS + L       L +       RL+ L L
Sbjct: 90  LSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQL 149

Query: 698 NNNKLT----GNLPSSFQNLTSLETLDLGNNRFSG----NIPSLLGNGFVGLRILSLRSN 749
               L+      L S  +     + L + NN  +      +   L +    L  L L S 
Sbjct: 150 EYCSLSAASCEPLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESC 209

Query: 750 AFSGE----IPSKLSNLSSLQVLDLAENNLTGSIPGSVGDLKAMAHVQNIVKYLLFGRYR 805
             + +    +   +++ +SL+ L L  N L     G       + H  + ++ L      
Sbjct: 210 GVTSDNCRDLCGIVASKASLRELALGSNKLGDV--GMAELCPGLLHPSSRLRTLWIWECG 267

Query: 806 GIYYEENLVINTKGSS------KDTPRLFHFIDLSGNNLHGDFPTQLTKLVG-----LVV 854
                    I  KG        +    L   + L+GN L  +    L + +      L  
Sbjct: 268 ---------ITAKGCGDLCRVLRAKESLKE-LSLAGNELGDEGARLLCETLLEPGCQLES 317

Query: 855 LNLSRNHIGGQ----IPENISGLHQLASLDLSSNN--------LSGGIPSSLSSLSFLGY 902
           L +                ++    L  L +S+N         L  G+    S L  L  
Sbjct: 318 LWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVL-- 375

Query: 903 INLSRNQLS 911
             L+   +S
Sbjct: 376 -WLADCDVS 383

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 83.9 bits (208), Expect = 6e-17
 Identities = 87/542 (16%), Positives = 164/542 (30%), Gaps = 141/542 (26%)

Query: 403 ENLVELTLSYNLLQGP-IPASLGNLKNLTKLNLPGNQLNGT----LPETLGSLPELSVLD 457
            ++  L +    L        L  L+    + L    L       +   L   P L+ L+
Sbjct: 3   LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELN 62

Query: 458 VSSNSLTGIISEIHFSRLSKLKFLGLSSNSFILNVSSSWIPPFQVQSLNMRSCQLGP--- 514
           + SN     + ++    + +    GL + S  +            Q L++++C L     
Sbjct: 63  LRSNE----LGDVGVHCVLQ----GLQTPSCKI------------QKLSLQNCCLTGAGC 102

Query: 515 -SFPSWLKTQQGVSFLDFSNASISGPIPNWFWDISSKLSLLNVSLNQLQGQLPNPLNIAP 573
               S L+T   +  L  S+  +            + L LL   L   Q +L        
Sbjct: 103 GVLSSTLRTLPTLQELHLSDNLLG----------DAGLQLLCEGLLDPQCRL-------- 144

Query: 574 FADVDFRSNLLEGPIPLPIVEIELLDLSNNHFSGPIPQNIS---GSMPNLIFLSVSGNRL 630
                                 E L L     S    + ++    + P+   L+VS N +
Sbjct: 145 ----------------------EKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDI 182

Query: 631 TGKIPGSIGEM-----QLLQVIDLSRNSIS----GSISSSIGNCTFLKVLDLSYSSL--S 679
                  + +        L+ + L    ++      +   + +   L+ L L  + L   
Sbjct: 183 NEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDV 242

Query: 680 GVI---PASLGQLTRLQSLHLNNNKLT----GNLPSSFQNLTSLETLDLGNNRFSG---- 728
           G+    P  L   +RL++L +    +T    G+L    +   SL+ L L  N        
Sbjct: 243 GMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGAR 302

Query: 729 NIPSLLGNGFVGLRILSLRSNAFSGE----IPSKLSNLSSLQVLDLAENNLTGSIPGSVG 784
            +   L      L  L ++S +F+        S L+    L  L ++ N L  +  G   
Sbjct: 303 LLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDA--GVRE 360

Query: 785 DLKAMAHVQNIVKYLLFGRYRGIYYEENLVINTKGSSKDTPRLFHFIDLSGNNLH----G 840
             + +    ++++ L                                 L+  ++      
Sbjct: 361 LCQGLGQPGSVLRVL--------------------------------WLADCDVSDSSCS 388

Query: 841 DFPTQLTKLVGLVVLNLSRNHIGGQIPENIS-GLHQ----LASLDLSSNNLSGGIPSSLS 895
                L     L  L+LS N +G      +   + Q    L  L L     S  +   L 
Sbjct: 389 SLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGCLLEQLVLYDIYWSEEMEDRLQ 448

Query: 896 SL 897
           +L
Sbjct: 449 AL 450

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 78.5 bits (194), Expect = 3e-15
 Identities = 64/359 (17%), Positives = 122/359 (33%), Gaps = 76/359 (21%)

Query: 595 IELLDLSNNHFSGPIPQNIS---GSMPNLIFLSVSGNRLTGKIPGSIGEMQL-----LQV 646
           I+ L L N   +G     +S    ++P L  L +S N L       + E  L     L+ 
Sbjct: 87  IQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEK 146

Query: 647 IDLSRNSIS----GSISSSIGNCTFLKVLDLSYSSLS--GV--IPASLGQLT-RLQSLHL 697
           + L   S+S      ++S +      K L +S + ++  GV  +   L     +L++L L
Sbjct: 147 LQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKL 206

Query: 698 NNNKLT----GNLPSSFQNLTSLETLDLGNNRFSG----NIPSLLGNGFVGLRILSLRSN 749
            +  +T     +L     +  SL  L LG+N+        +   L +    LR L +   
Sbjct: 207 ESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWEC 266

Query: 750 AFSGE----IPSKLSNLSSLQVLDLAENNLTGSIPGSVGDLKAMAHVQNIVKYLLFGRYR 805
             + +    +   L    SL+ L LA N L     G+    + +      ++ L      
Sbjct: 267 GITAKGCGDLCRVLRAKESLKELSLAGNELGDE--GARLLCETLLEPGCQLESL------ 318

Query: 806 GIYYEENLVINTKGSSKDTPRLFHFIDLSGNNLHGDFPTQLTKLVG----LVVLNLSRNH 861
                                      +   +      +  + ++     L+ L +S N 
Sbjct: 319 --------------------------WVKSCSFTAACCSHFSSVLAQNRFLLELQISNNR 352

Query: 862 IGGQIPENIS-----GLHQLASLDLSSNNLS----GGIPSSLSSLSFLGYINLSRNQLS 911
           +       +          L  L L+  ++S      + ++L +   L  ++LS N L 
Sbjct: 353 LEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLG 411

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 76.9 bits (190), Expect = 9e-15
 Identities = 78/425 (18%), Positives = 129/425 (30%), Gaps = 81/425 (19%)

Query: 98  LEYLDLSFNTFNDIPIPEFLGSLENLQYLNLSEAGFTGVVPSSLGNLHRLQYFDVSAELF 157
           ++ LD+     +D    E L  L+  Q + L + G T                +   +  
Sbjct: 5   IQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLT----------------EARCKDI 48

Query: 158 ALSADSLDWLTGLVSLKHLAMNRVDLSLVGSEWL--GILKNLPNLTELHLSVCGLTG-SI 214
           + +      L    +L  L +   +L  VG   +  G+      + +L L  C LTG   
Sbjct: 49  SSA------LRVNPALAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGC 102

Query: 215 TSITPVNLTSPA--VLDLSLNHFN-----SLFPNWLVNISTLVYVDLSDCDLYGRIPIGF 267
             ++    T P    L LS N         L    L     L  + L  C L        
Sbjct: 103 GVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPL 162

Query: 268 GEL----PNLQYLSLAGNNNLSGSCSQLFRG---SWKKIQILNFASNKLHGKLPSSVANM 320
             +    P+ + L+++ N+        L +G   S  +++ L   S  +      +  N 
Sbjct: 163 ASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGV------TSDNC 216

Query: 321 TSLTNFDLFDKKVEGGIPSSIARLCYLKEFDLSGNNLTGSLPEILQGTDLCVSSNSPLPS 380
             L                 +A    L+E  L  N L           +LC     P   
Sbjct: 217 RDLC--------------GIVASKASLRELALGSNKLGDV-----GMAELCPGLLHPSSR 257

Query: 381 LISMRLGNNHLKGK----LPEWLSQLENLVELTLSYNLLQGP-----IPASLGNLKNLTK 431
           L ++ +    +  K    L   L   E+L EL+L+ N L            L     L  
Sbjct: 258 LRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLES 317

Query: 432 LNLPGNQLNGT----LPETLGSLPELSVLDVSSNSLTG----IISEIHFSRLSKLKFLGL 483
           L +                L     L  L +S+N L       + +      S L+ L L
Sbjct: 318 LWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWL 377

Query: 484 SSNSF 488
           +    
Sbjct: 378 ADCDV 382

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 69.6 bits (171), Expect = 2e-12
 Identities = 89/519 (17%), Positives = 165/519 (31%), Gaps = 107/519 (20%)

Query: 247 STLVYVDLSDCDL-YGRIPIGFGELPNLQYLSLAGNNNLSGSCSQLFRG--SWKKIQILN 303
             +  +D+   +L   R       L   Q + L         C  +         +  LN
Sbjct: 3   LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELN 62

Query: 304 FASNKLHGKLPSSVANM-----TSLTNFDLFDKKV--EGG--IPSSIARLCYLKEFDLSG 354
             SN+L       V          +    L +  +   G   + S++  L  L+E  LS 
Sbjct: 63  LRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSD 122

Query: 355 NNLTGSLPEILQGTDLCVSSNSPLPSLISMRLGNNHLKGK----LPEWLSQLENLVELTL 410
           N L  +  ++L     C     P   L  ++L    L       L   L    +  ELT+
Sbjct: 123 NLLGDAGLQLL-----CEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTV 177

Query: 411 SYNLLQGP----IPASLGNLK-NLTKLNLPGNQLN----GTLPETLGSLPELSVLDVSSN 461
           S N +       +   L +    L  L L    +       L   + S   L  L + SN
Sbjct: 178 SNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSN 237

Query: 462 SLTGIISEIHFSRLSKLKFLGLSSNSFILNVSSSWIPPFQVQSLNMRSCQLGPSFPSWLK 521
                + ++  + L       L  +S +             ++L +  C +         
Sbjct: 238 K----LGDVGMAELCPGL---LHPSSRL-------------RTLWIWECGITA------- 270

Query: 522 TQQGVSFLDFSNASISGPIPNWFWDISSKLSLLNVSLNQLQGQLPNPLNIAPFADVDFRS 581
             +G   L       +             L  L+++ N+L                D  +
Sbjct: 271 --KGCGDL--CRVLRA----------KESLKELSLAGNELG---------------DEGA 301

Query: 582 NLLEGPIPLPIVEIELLDLSNNHFSGPIPQNIS---GSMPNLIFLSVSGNRLTGKIPGSI 638
            LL   +  P  ++E L + +  F+     + S        L+ L +S NRL       +
Sbjct: 302 RLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVREL 361

Query: 639 GEM-----QLLQVIDLSRNSIS----GSISSSIGNCTFLKVLDLSYSSLSGVIPASLGQL 689
            +       +L+V+ L+   +S     S+++++     L+ LDLS + L       L + 
Sbjct: 362 CQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVES 421

Query: 690 -----TRLQSLHLNNNKLTGN----LPSSFQNLTSLETL 719
                  L+ L L +   +      L +  ++  SL  +
Sbjct: 422 VRQPGCLLEQLVLYDIYWSEEMEDRLQALEKDKPSLRVI 460

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 81.9 bits (203), Expect = 4e-17
 Identities = 51/189 (26%), Positives = 83/189 (43%), Gaps = 7/189 (3%)

Query: 588 IPLPI-VEIELLDLSNNHFSGPIPQNISGSMPNLIFLSVSGNRLTGKIPGSIGEMQLLQV 646
           IP  I  + + LDL +N  S  +P      +  L  L ++ N+L     G   E++ L+ 
Sbjct: 31  IPSNIPADTKKLDLQSNKLSS-LPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLET 89

Query: 647 IDLSRNSISGSISSSI-GNCTFLKVLDLSYSSLSGVIPASLGQLTRLQSLHLNNNKLTGN 705
           + ++ N +  ++   +      L  L L  + L  + P     LT+L  L L  N+L  +
Sbjct: 90  LWVTDNKLQ-ALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQ-S 147

Query: 706 LPS-SFQNLTSLETLDLGNNRFSGNIPSLLGNGFVGLRILSLRSNAFSGEIPSKLSNLSS 764
           LP   F  LTSL+ L L NN+    +P    +    L+ L L +N           +L  
Sbjct: 148 LPKGVFDKLTSLKELRLYNNQLK-RVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEK 206

Query: 765 LQVLDLAEN 773
           L++L L EN
Sbjct: 207 LKMLQLQEN 215

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 73.5 bits (181), Expect = 2e-14
 Identities = 62/255 (24%), Positives = 87/255 (34%), Gaps = 64/255 (25%)

Query: 664 NCTFLKVLDLSYSSLSGV---IPASLGQLTRLQSLHLNNNKLTGNLPSSFQNLTSLETLD 720
           N     V D S   L+ +   IPA        + L L +NKL+     +F  LT L  L 
Sbjct: 15  NNNKNSV-DCSSKKLTAIPSNIPADT------KKLDLQSNKLSSLPSKAFHRLTKLRLLY 67

Query: 721 LGNNRFSGNIPSLLGNGFVGLRILSLRSNAFSGEIPSKL-SNLSSLQVLDLAENNLTGSI 779
           L +N+    +P+ +      L  L +  N     +P  +   L +L  L L  N L  S+
Sbjct: 68  LNDNKLQ-TLPAGIFKELKNLETLWVTDNKLQ-ALPIGVFDQLVNLAELRLDRNQLK-SL 124

Query: 780 PGSVGD-LKAMAHVQNIVKYLLFGRYRGIYYEENLVINTKGSSKDTPRLFHFIDLSGNNL 838
           P  V D L  +        YL                                 L  N L
Sbjct: 125 PPRVFDSLTKL-------TYL--------------------------------SLGYNEL 145

Query: 839 ----HGDFPTQLTKLVGLVVLNLSRNHIGGQIPENI-SGLHQLASLDLSSNNLSGGIPSS 893
                G F     KL  L  L L  N +  ++PE     L +L +L L +N L      +
Sbjct: 146 QSLPKGVF----DKLTSLKELRLYNNQLK-RVPEGAFDKLTELKTLKLDNNQLKRVPEGA 200

Query: 894 LSSLSFLGYINLSRN 908
             SL  L  + L  N
Sbjct: 201 FDSLEKLKMLQLQEN 215

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 71.9 bits (177), Expect = 9e-14
 Identities = 40/144 (27%), Positives = 65/144 (45%), Gaps = 6/144 (4%)

Query: 644 LQVIDLSRNSISGSISSSIGNCTFLKVLDLSYSSLSGVIPASLGQLTRLQSLHLNNNKLT 703
            + +DL  N +S   S +    T L++L L+ + L  +      +L  L++L + +NKL 
Sbjct: 39  TKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKLQ 98

Query: 704 GNLPSS-FQNLTSLETLDLGNNRFSGNIPSLLGNGFVGLRILSLRSNAFSGEIPSKL-SN 761
             LP   F  L +L  L L  N+   ++P  + +    L  LSL  N     +P  +   
Sbjct: 99  -ALPIGVFDQLVNLAELRLDRNQLK-SLPPRVFDSLTKLTYLSLGYNELQ-SLPKGVFDK 155

Query: 762 LSSLQVLDLAENNLTGSIPGSVGD 785
           L+SL+ L L  N L   +P    D
Sbjct: 156 LTSLKELRLYNNQLK-RVPEGAFD 178

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 68.5 bits (168), Expect = 1e-12
 Identities = 60/192 (31%), Positives = 83/192 (43%), Gaps = 21/192 (10%)

Query: 300 QILNFASNKLHGKLPSSV-ANMTSLTNFDLFDKKVEGGIPSSI-ARLCYLKEFDLSGNNL 357
           + L+  SNKL   LPS     +T L    L D K++  +P+ I   L  L+   ++ N L
Sbjct: 40  KKLDLQSNKL-SSLPSKAFHRLTKLRLLYLNDNKLQT-LPAGIFKELKNLETLWVTDNKL 97

Query: 358 TGSLPE-ILQGTDLCVSSNSPLPSLISMRLGNNHLKGKLPEWL-SQLENLVELTLSYNLL 415
             +LP  +             L +L  +RL  N LK  LP  +   L  L  L+L YN L
Sbjct: 98  Q-ALPIGVFDQ----------LVNLAELRLDRNQLK-SLPPRVFDSLTKLTYLSLGYNEL 145

Query: 416 QGPIPASL-GNLKNLTKLNLPGNQLNGTLPETLGSLPELSVLDVSSNSLTGIISEIHFSR 474
           Q  +P  +   L +L +L L  NQL          L EL  L + +N L  +     F  
Sbjct: 146 QS-LPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGA-FDS 203

Query: 475 LSKLKFLGLSSN 486
           L KLK L L  N
Sbjct: 204 LEKLKMLQLQEN 215

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 53.1 bits (128), Expect = 1e-07
 Identities = 25/84 (29%), Positives = 34/84 (40%), Gaps = 3/84 (3%)

Query: 404 NLVELTLSYNLLQGPIPASLGNLKNLTKLNLPGNQLNGTLPETL-GSLPELSVLDVSSNS 462
           +  +L L  N L      +   L  L  L L  N+L  TLP  +   L  L  L V+ N 
Sbjct: 38  DTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQ-TLPAGIFKELKNLETLWVTDNK 96

Query: 463 LTGIISEIHFSRLSKLKFLGLSSN 486
           L  +   + F +L  L  L L  N
Sbjct: 97  LQALPIGV-FDQLVNLAELRLDRN 119

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 51.1 bits (123), Expect = 6e-07
 Identities = 43/211 (20%), Positives = 77/211 (36%), Gaps = 36/211 (17%)

Query: 122 NLQYLNLSEAGFTGVVPSSLGNLHRLQYFDVSA-ELFALSADSLDWLTGLVSLKHLAMNR 180
           + + L+L     + +   +   L +L+   ++  +L  L A                   
Sbjct: 38  DTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPA------------------- 78

Query: 181 VDLSLVGSEWLGILKNLPNLTELHLSVCGLTGSITSITPVNLTSPAVLDLSLNHFNSLFP 240
                      GI K L NL  L ++   L  ++       L + A L L  N   SL P
Sbjct: 79  -----------GIFKELKNLETLWVTDNKLQ-ALPIGVFDQLVNLAELRLDRNQLKSLPP 126

Query: 241 NWLVNISTLVYVDLSDCDLYGRIPIG-FGELPNLQYLSLAGNNNLSGSCSQLFRGSWKKI 299
               +++ L Y+ L   +L   +P G F +L +L+ L L  NN L       F     ++
Sbjct: 127 RVFDSLTKLTYLSLGYNEL-QSLPKGVFDKLTSLKELRL-YNNQLKRVPEGAFDK-LTEL 183

Query: 300 QILNFASNKLHGKLPSSVANMTSLTNFDLFD 330
           + L   +N+L      +  ++  L    L +
Sbjct: 184 KTLKLDNNQLKRVPEGAFDSLEKLKMLQLQE 214

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 48.8 bits (117), Expect = 3e-06
 Identities = 47/190 (24%), Positives = 70/190 (36%), Gaps = 19/190 (10%)

Query: 98  LEYLDLSFNTFNDIPIPEFLGSLENLQYLNLSEAGFTGVVPSSLGNLHRLQYFDVSA-EL 156
            + LDL  N  + +P   F   L  L+ L L++     +       L  L+   V+  +L
Sbjct: 39  TKKLDLQSNKLSSLPSKAFHR-LTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKL 97

Query: 157 FALSADSLDWLTGLVSLKHLAMNRV-DLSLVGSEWLGILKNLPNLTELHLSVCGLTGSIT 215
            AL     D L  L  L  L  N++  L         +  +L  LT L L        + 
Sbjct: 98  QALPIGVFDQLVNLAEL-RLDRNQLKSLPP------RVFDSLTKLTYLSLGYN----ELQ 146

Query: 216 SITP---VNLTSPAVLDLSLNHFNSLFPNWLVNISTLVYVDLSDCDLYGRIPIG-FGELP 271
           S+       LTS   L L  N    +       ++ L  + L +  L  R+P G F  L 
Sbjct: 147 SLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLK-RVPEGAFDSLE 205

Query: 272 NLQYLSLAGN 281
            L+ L L  N
Sbjct: 206 KLKMLQLQEN 215

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 46.9 bits (112), Expect = 1e-05
 Identities = 37/176 (21%), Positives = 64/176 (36%), Gaps = 7/176 (3%)

Query: 192 GILKNLPNLTELHLSVCGLTGSITSITPVNLTSPAVLDLSLNHFNSLFPNWLVNISTLVY 251
                L  L  L+L+   L  ++ +     L +   L ++ N   +L       +  L  
Sbjct: 55  KAFHRLTKLRLLYLNDNKLQ-TLPAGIFKELKNLETLWVTDNKLQALPIGVFDQLVNLAE 113

Query: 252 VDLSDCDLYGRIPIG-FGELPNLQYLSLAGNNNLSGSCSQLFRGSWKKIQILNFASNKLH 310
           + L    L   +P   F  L  L YLSL G N L      +F      ++ L   +N+L 
Sbjct: 114 LRLDRNQL-KSLPPRVFDSLTKLTYLSL-GYNELQSLPKGVFDKL-TSLKELRLYNNQLK 170

Query: 311 GKLPSSV-ANMTSLTNFDLFDKKVEGGIPSSIARLCYLKEFDLSGNNLTGSLPEIL 365
            ++P      +T L    L + +++     +   L  LK   L  N    +   I+
Sbjct: 171 -RVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQENPWDCTCNGII 225

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 44.2 bits (105), Expect = 1e-04
 Identities = 29/97 (29%), Positives = 42/97 (43%), Gaps = 13/97 (13%)

Query: 823 DTPRLFHFIDLSGNNLHGDFPTQLTKLVGLVVLNLSRNHIGGQIPENI-SGLHQLASLDL 881
           DT +L    DL  N L         +L  L +L L+ N +   +P  I   L  L +L +
Sbjct: 38  DTKKL----DLQSNKLSSLPSKAFHRLTKLRLLYLNDNKL-QTLPAGIFKELKNLETLWV 92

Query: 882 SSNNLS---GGIPSSLSSLSFLGYINLSRNQLSGKIP 915
           + N L     G+   L +L+ L    L RNQL   +P
Sbjct: 93  TDNKLQALPIGVFDQLVNLAEL---RLDRNQLK-SLP 125

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 77.4 bits (191), Expect = 2e-15
 Identities = 58/293 (19%), Positives = 105/293 (35%), Gaps = 58/293 (19%)

Query: 616 SMPNLIFLSVSGNRLTGKIPGSIGEMQLLQVIDLSRNSISGSISSSIGNCTFLKVLDLSY 675
           +    I  ++    +T  +     E+  +  I  + + I  S+   I     +  L L+ 
Sbjct: 22  AFAETIKDNLKKKSVTDAVT--QNELNSIDQIIANNSDIK-SVQG-IQYLPNVTKLFLNG 77

Query: 676 SSLSGVIPASLGQLTRLQSLHLNNNKLTGNLPSSFQNLTSLETLDLGNNRFSGNIPSLLG 735
           + L+ + P  L  L  L  L L+ NK+  +L SS ++L  L++L L +N  S +I  L  
Sbjct: 78  NKLTDIKP--LANLKNLGWLFLDENKVK-DL-SSLKDLKKLKSLSLEHNGIS-DINGL-- 130

Query: 736 NGFVGLRILSLRSNAFSGEIPSKLSNLSSLQVLDLAENNLTGSIPGSVGDLKAMAHVQNI 795
                L  L L +N  +    + LS L+ L  L L +N ++        D+  +A +  +
Sbjct: 131 VHLPQLESLYLGNNKITD--ITVLSRLTKLDTLSLEDNQIS--------DIVPLAGLTKL 180

Query: 796 VKYLLFGRYRGIYYEENLVINTKGSSKDTPRLFHFIDLSGNNLHGDFPTQLTKLVGLVVL 855
                                              + LS N++  D    L  L  L VL
Sbjct: 181 QN---------------------------------LYLSKNHIS-DLRA-LAGLKNLDVL 205

Query: 856 NLSRNHIGGQIPENISGLHQLASLDLSSNNLSGGIPSSLSSLSFLGYINLSRN 908
            L       +   + S L    ++  +  +L    P  +S        N+  +
Sbjct: 206 ELFSQECLNKPINHQSNLVVPNTVKNTDGSLVT--PEIISDDGDYEKPNVKWH 256

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 72.0 bits (177), Expect = 9e-14
 Identities = 56/267 (20%), Positives = 94/267 (35%), Gaps = 56/267 (20%)

Query: 644 LQVIDLSRNSISGSISSSIGNCTFLKVLDLSYSSLSGVIPASLGQLTRLQSLHLNNNKLT 703
               +L + S++ +   +      +  +  + S +  V    +  L  +  L LN NKLT
Sbjct: 26  TIKDNLKKKSVTDA--VTQNELNSIDQIIANNSDIKSVQG--IQYLPNVTKLFLNGNKLT 81

Query: 704 GNLPSSFQNLTSLETLDLGNNRFSGNIPSLLGNGFVGLRILSLRSNAFSGEIPSKLSNLS 763
            ++     NL +L  L L  N+   ++ SL       L+ LSL  N  S +I   L +L 
Sbjct: 82  -DI-KPLANLKNLGWLFLDENKVK-DLSSL--KDLKKLKSLSLEHNGIS-DING-LVHLP 134

Query: 764 SLQVLDLAENNLTGSIPGSVGDLKAMAHVQNIVKYLLFGRYRGIYYEENLVINTKGSSKD 823
            L+ L L  N +T        D+  ++ +  +                            
Sbjct: 135 QLESLYLGNNKIT--------DITVLSRLTKL---------------------------- 158

Query: 824 TPRLFHFIDLSGNNLHGDFPTQLTKLVGLVVLNLSRNHIGGQIPENISGLHQLASLDLSS 883
                  + L  N +  D    L  L  L  L LS+NHI       ++GL  L  L+L S
Sbjct: 159 -----DTLSLEDNQIS-DIV-PLAGLTKLQNLYLSKNHI--SDLRALAGLKNLDVLELFS 209

Query: 884 NNLSGGIPSSLSSLSFLGYINLSRNQL 910
                   +  S+L     +  +   L
Sbjct: 210 QECLNKPINHQSNLVVPNTVKNTDGSL 236

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 70.1 bits (172), Expect = 5e-13
 Identities = 48/252 (19%), Positives = 89/252 (35%), Gaps = 56/252 (22%)

Query: 660 SSIGNCTFLKVLDLSYSSLSGVIPASLGQLTRLQSLHLNNNKLTGNLPSSFQNLTSLETL 719
            S          +L   S++  +     +L  +  +  NN+ +  ++    Q L ++  L
Sbjct: 18  FSDDAFAETIKDNLKKKSVTDAVT--QNELNSIDQIIANNSDIK-SV-QGIQYLPNVTKL 73

Query: 720 DLGNNRFSGNIPSLLGNGFVGLRILSLRSNAFSGEIPSKLSNLSSLQVLDLAENNLTGSI 779
            L  N+ + +I  L       L  L L  N    ++ S L +L  L+ L L  N ++   
Sbjct: 74  FLNGNKLT-DIKPL--ANLKNLGWLFLDENKVK-DLSS-LKDLKKLKSLSLEHNGIS--- 125

Query: 780 PGSVGDLKAMAHVQNIVKYLLFGRYRGIYYEENLVINTKGSSKDTPRLFHFIDLSGNNLH 839
                D+  + H+  +                                   + L  N + 
Sbjct: 126 -----DINGLVHLPQLES---------------------------------LYLGNNKIT 147

Query: 840 GDFPTQLTKLVGLVVLNLSRNHIGGQIPENISGLHQLASLDLSSNNLSGGIPSSLSSLSF 899
               T L++L  L  L+L  N I       ++GL +L +L LS N++S     +L+ L  
Sbjct: 148 D--ITVLSRLTKLDTLSLEDNQI--SDIVPLAGLTKLQNLYLSKNHISD--LRALAGLKN 201

Query: 900 LGYINLSRNQLS 911
           L  + L   +  
Sbjct: 202 LDVLELFSQECL 213

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 67.4 bits (165), Expect = 3e-12
 Identities = 50/270 (18%), Positives = 89/270 (32%), Gaps = 33/270 (12%)

Query: 213 SITSITPV-NLTSPAVLDLSLNHFNSLFPNWLVNISTLVYVDLSDCDLYGRIPIGFGELP 271
            I  I            +L               ++++  +  ++ D+   +  G   LP
Sbjct: 13  PIKQIFSDDAFAETIKDNLKKKSVTDAVT--QNELNSIDQIIANNSDI-KSVQ-GIQYLP 68

Query: 272 NLQYLSLAGNN--NLSGSCSQLFRGSWKKIQILNFASNKLHGKLPSSVANMTSLTNFDLF 329
           N+  L L GN   ++    + L     K +  L    NK+   L SS+ ++  L +  L 
Sbjct: 69  NVTKLFLNGNKLTDIKP-LANL-----KNLGWLFLDENKVK-DL-SSLKDLKKLKSLSLE 120

Query: 330 DKKVEGGIPSSIARLCYLKEFDLSGNNLTGSLPEILQGTDLCVSSNSPLPSLISMRLGNN 389
              +     + +  L  L+   L  N +T             ++  S L  L ++ L +N
Sbjct: 121 HNGIS--DINGLVHLPQLESLYLGNNKIT------------DITVLSRLTKLDTLSLEDN 166

Query: 390 HLKGKLPEWLSQLENLVELTLSYNLLQGPIPASLGNLKNLTKLNLPGNQLNGTLPETLGS 449
            +   +   L+ L  L  L LS N +       L  LKNL  L L   +          +
Sbjct: 167 QIS-DIVP-LAGLTKLQNLYLSKNHISDLRA--LAGLKNLDVLELFSQECLNKPINHQSN 222

Query: 450 LPELSVLDVSSNSLTGIISEIHFSRLSKLK 479
           L   + +  +  SL             K  
Sbjct: 223 LVVPNTVKNTDGSLVTPEIISDDGDYEKPN 252

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 61.2 bits (149), Expect = 3e-10
 Identities = 44/244 (18%), Positives = 92/244 (37%), Gaps = 35/244 (14%)

Query: 194 LKNLPNLTELHLSVCGLTGSITSITPV-NLTSPAVLDLSLNHFNSLFPNWLVNISTLVYV 252
              L ++ ++  +       I S+  +  L +   L L+ N    + P  L N+  L ++
Sbjct: 42  QNELNSIDQIIANNSD----IKSVQGIQYLPNVTKLFLNGNKLTDIKP--LANLKNLGWL 95

Query: 253 DLSDCDLYGRIPIGFGELPNLQYLSLAGNN--NLSGSCSQLFRGSWKKIQILNFASNKLH 310
            L +  +   +     +L  L+ LSL  N   +++G    L      +++ L   +NK+ 
Sbjct: 96  FLDENKV-KDLS-SLKDLKKLKSLSLEHNGISDING-LVHL-----PQLESLYLGNNKI- 146

Query: 311 GKLPSSVANMTSLTNFDLFDKKVEGGIPSSIARLCYLKEFDLSGNNLTGSLPEILQGTDL 370
               + ++ +T L    L D ++       +A L  L+   LS N+++            
Sbjct: 147 -TDITVLSRLTKLDTLSLEDNQISD--IVPLAGLTKLQNLYLSKNHISD----------- 192

Query: 371 CVSSNSPLPSLISMRLGNNHLKGKLPEWLSQLENLVELTLSYNLLQGPIPASLGNLKNLT 430
            + + + L +L  + L +     K     S L     +  +   L  P   S  +  +  
Sbjct: 193 -LRALAGLKNLDVLELFSQECLNKPINHQSNLVVPNTVKNTDGSLVTPEIIS--DDGDYE 249

Query: 431 KLNL 434
           K N+
Sbjct: 250 KPNV 253

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 57.4 bits (139), Expect = 7e-09
 Identities = 32/134 (23%), Positives = 55/134 (41%), Gaps = 13/134 (9%)

Query: 593 VEIELLDLSNNHFSGPIPQNISG--SMPNLIFLSVSGNRLTGKIPGSIGEMQLLQVIDLS 650
            +++ L L +N  S     +I+G   +P L  L +  N++T  I   +  +  L  + L 
Sbjct: 112 KKLKSLSLEHNGIS-----DINGLVHLPQLESLYLGNNKIT-DITV-LSRLTKLDTLSLE 164

Query: 651 RNSISGSISSSIGNCTFLKVLDLSYSSLSGVIPASLGQLTRLQSLHLNNNKLTGNLPSSF 710
            N IS  I   +   T L+ L LS + +S +    L  L  L  L L + +      +  
Sbjct: 165 DNQIS-DIVP-LAGLTKLQNLYLSKNHISDLRA--LAGLKNLDVLELFSQECLNKPINHQ 220

Query: 711 QNLTSLETLDLGNN 724
            NL    T+   + 
Sbjct: 221 SNLVVPNTVKNTDG 234

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 56.2 bits (136), Expect = 1e-08
 Identities = 50/314 (15%), Positives = 96/314 (30%), Gaps = 62/314 (19%)

Query: 104 SFNTFNDIPIPEFLGSLENLQYLNLSEAGFTGVVPSSLGNLHRLQYFDVSAELFALSADS 163
           +      I       +       NL +   T  V      L+ +     +         S
Sbjct: 7   TITVPTPIKQIFSDDAFAETIKDNLKKKSVTDAVT--QNELNSIDQIIANNSDI----KS 60

Query: 164 LDWLTGLVSLKHLAMNRVDLSLVGSEWLGILKNLPNLTELHLSVCGLTGSITSITPV-NL 222
           +  +  L ++  L +N   L+ +       L NL NL  L L        +  ++ + +L
Sbjct: 61  VQGIQYLPNVTKLFLNGNKLTDIKP-----LANLKNLGWLFLDEN----KVKDLSSLKDL 111

Query: 223 TSPAVLDLSLNHFNSLFPNWLVNISTLVYVDLSDCDLYGRIPIGFGELPNLQYLSLAGNN 282
                L L  N  + +    LV++  L  + L +  +          L  L  LSL  N 
Sbjct: 112 KKLKSLSLEHNGISDING--LVHLPQLESLYLGNNKI--TDITVLSRLTKLDTLSLEDN- 166

Query: 283 NLSGSCSQLFRGSWKKIQILNFASNKLHGKLPSSVANMTSLTNFDLFDKKVEGGIPSSIA 342
                            QI +             +A +T L N  L    +      ++A
Sbjct: 167 -----------------QISDI----------VPLAGLTKLQNLYLSKNHISD--LRALA 197

Query: 343 RLCYLKEFDLSGNNLTGSLPEILQGTDLCVSSNSPLPSLISMRLGNNHLKGKLPEWLSQL 402
            L  L   +L                +  ++  S L    +++  +  L    PE +S  
Sbjct: 198 GLKNLDVLELFSQEC----------LNKPINHQSNLVVPNTVKNTDGSLVT--PEIISDD 245

Query: 403 ENLVELTLSYNLLQ 416
            +  +  + ++L +
Sbjct: 246 GDYEKPNVKWHLPE 259

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 52.0 bits (125), Expect = 4e-07
 Identities = 43/189 (22%), Positives = 68/189 (35%), Gaps = 29/189 (15%)

Query: 98  LEYLDLSFNTFNDIPIPEFLGSLENLQYLNLSEAGFTGVVPSSLGNLHRLQYFDVSAELF 157
           ++ +  + +    +   + +  L N+  L L+    T +    L NL  L +  +     
Sbjct: 48  IDQIIANNSDIKSV---QGIQYLPNVTKLFLNGNKLTDI--KPLANLKNLGWLFLDENKV 102

Query: 158 ALSADSLDWLTGLVSLKHLAMNRVDLSLVGSEWLGILKNLPNLTELHLSVCGLTGSITSI 217
                 L  L  L  LK L++    +S +       L +LP L  L+L        IT I
Sbjct: 103 K----DLSSLKDLKKLKSLSLEHNGISDING-----LVHLPQLESLYLGNNK----ITDI 149

Query: 218 TPV-NLTSPAVLDLSLNHFNSLFPNWLVNISTLVYVDLSDC---DLYGRIPIGFGELPNL 273
           T +  LT    L L  N  + + P  L  ++ L  + LS     DL          L NL
Sbjct: 150 TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISDLR-----ALAGLKNL 202

Query: 274 QYLSLAGNN 282
             L L    
Sbjct: 203 DVLELFSQE 211

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 77.9 bits (191), Expect = 7e-15
 Identities = 47/341 (13%), Positives = 102/341 (29%), Gaps = 33/341 (9%)

Query: 439 LNGTLPETLGSLPELSVLDVSSNSLTGIISEIHFSRLSKLKFLGLSSNSFILNVSSSWIP 498
           L    P  +     +S  +   +        +     + L  +  +  S           
Sbjct: 236 LGRAEPHDVLCCVHVSREEACLSVCFSRPLTVGSRMGTLLLMVDEAPLSVEWRTPDGRNR 295

Query: 499 PFQVQSLNMRSCQLGPSFPSWLKTQQGVSFLDFSNASISGPIPNWFWDISS---KLSLLN 555
           P  V   ++ +  L    P                  +    P  +   S+   +L    
Sbjct: 296 PSHVWLCDLPAASLNDQLPQHTFRVIWTGSDSQKECVLLKDRPECWCRDSATDEQLFRCE 355

Query: 556 VSLNQLQGQLPNPLNIAPFADVDFRSNLLEGPIPLPIVEIELLDLSNNHFSGPIPQNISG 615
           +S+ +         +     +++  +      I L +  ++ L               + 
Sbjct: 356 LSVEKSTVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQ-YFSTLKAV 414

Query: 616 SMPNLIFLSVSGNRLTGKIPGSIGEMQLLQVIDLSRNSISGSISSSIGNCTFLKVLDLSY 675
                 +L    ++   +      E   ++V+ L+   ++  +   +     +  LDLS+
Sbjct: 415 DPMRAAYLDDLRSKFLLENSVLKMEYADVRVLHLAHKDLT-VLCH-LEQLLLVTHLDLSH 472

Query: 676 SSLSGVIPASLGQLTRLQSLHLNNNKLTGNLPSSFQNLTSLETLDLGNNRFSGNIPSLLG 735
           + L   +P +L  L  L+ L  ++N L  N+     NL  L+ L L NNR      ++  
Sbjct: 473 NRLR-ALPPALAALRCLEVLQASDNALE-NVD-GVANLPRLQELLLCNNRLQ-QSAAIQ- 527

Query: 736 NGFVGLRILSLRSNAFSGEIPSKLSNLSSLQVLDLAENNLT 776
                                  L +   L +L+L  N+L 
Sbjct: 528 ----------------------PLVSCPRLVLLNLQGNSLC 546

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 76.3 bits (187), Expect = 2e-14
 Identities = 41/194 (21%), Positives = 67/194 (34%), Gaps = 13/194 (6%)

Query: 301 ILNFASNKLHGKLPSSVANMTSLTNFDLFDKKVEGGIPSSIARLCYLKEFDLSGNNLTGS 360
            L+   + +      S   +  L   + +       +  ++  L Y KE     + L   
Sbjct: 355 ELSVEKSTVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAV 414

Query: 361 LPEILQGTDLCVSSNSPLPSLISMR--------LGNNHLKGKLPEWLSQLENLVELTLSY 412
            P      D   S      S++ M         L +  L   L   L QL  +  L LS+
Sbjct: 415 DPMRAAYLDDLRSKFLLENSVLKMEYADVRVLHLAHKDLT-VLCH-LEQLLLVTHLDLSH 472

Query: 413 NLLQGPIPASLGNLKNLTKLNLPGNQLNGTLPETLGSLPELSVLDVSSNSLTGIISEIHF 472
           N L+  +P +L  L+ L  L    N L   +   + +LP L  L + +N L    +    
Sbjct: 473 NRLRA-LPPALAALRCLEVLQASDNALE-NVDG-VANLPRLQELLLCNNRLQQSAAIQPL 529

Query: 473 SRLSKLKFLGLSSN 486
               +L  L L  N
Sbjct: 530 VSCPRLVLLNLQGN 543

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 69.0 bits (168), Expect = 5e-12
 Identities = 47/241 (19%), Positives = 78/241 (32%), Gaps = 25/241 (10%)

Query: 221 NLTSPAVLDLSLNHFNSLFPNWLVNISTLVYVDLSDCDLYGRIPIGFGELPNLQYLSLAG 280
                   +LS+     +  + L +   L  ++  +      I +    L  L Y     
Sbjct: 347 TDEQLFRCELSVEKST-VLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYE---- 401

Query: 281 NNNLSGSCSQLFRGSWKKIQILNFASNKLHGKLPSSVANMTSLTNFDLFDKKVEGGIPSS 340
                   S L      +   L+   +K   +          +    L  K +   +   
Sbjct: 402 -KETLQYFSTLKAVDPMRAAYLDDLRSKFLLENSVLKMEYADVRVLHLAHKDLT--VLCH 458

Query: 341 IARLCYLKEFDLSGNNLTGSLPEILQGTDLCVSSNSPLPSLISMRLGNNHLKGKLPEWLS 400
           + +L  +   DLS N L  +LP  L          + L  L  ++  +N L+  +   ++
Sbjct: 459 LEQLLLVTHLDLSHNRLR-ALPPAL----------AALRCLEVLQASDNALE-NVDG-VA 505

Query: 401 QLENLVELTLSYNLLQG-PIPASLGNLKNLTKLNLPGNQL---NGTLPETLGSLPELSVL 456
            L  L EL L  N LQ       L +   L  LNL GN L    G        LP +S +
Sbjct: 506 NLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSI 565

Query: 457 D 457
            
Sbjct: 566 L 566

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 66.3 bits (161), Expect = 2e-11
 Identities = 60/335 (17%), Positives = 103/335 (30%), Gaps = 30/335 (8%)

Query: 582 NLLEGPIPLPIVEIELLDLSNNHFSGPIPQNISGSMPNLIFLSVSGNRLTGKIPGSIGEM 641
              E    L  V +   +   +          S     L+ +  +   +  + P      
Sbjct: 237 GRAEPHDVLCCVHVSREEACLSVCFSRPLTVGSRMGTLLLMVDEAPLSVEWRTPDGRNRP 296

Query: 642 QLLQVIDLSRNSISGSISSSIGNCTFLKVLDLSYSSLSGVIPASL----GQLTRLQSLHL 697
             + + DL   S++  +        +          L    P           +L    L
Sbjct: 297 SHVWLCDLPAASLNDQLPQHTFRVIWTGSDSQKECVLLKDRPECWCRDSATDEQLFRCEL 356

Query: 698 NNNKLTGNLPSSFQNLTSLETLDLGNNRFSGNIPSLLGNGFVGLRILSLRSNAFSGEIPS 757
           +  K T  L S  ++   L+ L+  N      I  L+          +L    +  E   
Sbjct: 357 SVEKST-VLQSELESCKELQELEPENKWCLLTIILLM---------RALDPLLYEKETLQ 406

Query: 758 KLSNLSSLQVLDLAENNLTGSIPGSVGDLKAMAHVQNIVKYLLFGRYRGIYYEENLVINT 817
             S L ++  +  A  +   S       +  M +    V +L       + + E L++ T
Sbjct: 407 YFSTLKAVDPMRAAYLDDLRSKFLLENSVLKMEYADVRVLHLAHKDLTVLCHLEQLLLVT 466

Query: 818 KGSSKDTPRLFHFIDLSGNNLHGDFPTQLTKLVGLVVLNLSRNHIGGQIPENISGLHQLA 877
                        +DLS N L    P  L  L  L VL  S N +  +  + ++ L +L 
Sbjct: 467 H------------LDLSHNRLR-ALPPALAALRCLEVLQASDNAL--ENVDGVANLPRLQ 511

Query: 878 SLDLSSNNLSG-GIPSSLSSLSFLGYINLSRNQLS 911
            L L +N L        L S   L  +NL  N L 
Sbjct: 512 ELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLC 546

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 46.7 bits (110), Expect = 3e-05
 Identities = 27/109 (24%), Positives = 40/109 (36%), Gaps = 12/109 (11%)

Query: 99  EYLDLSFNTFNDIPIPEFLGSLENLQYLNLSEAGFTGVVPSSLGNLHRLQYFDVSA-ELF 157
             L L+      +     L  L  + +L+LS       +P +L  L  L+    S   L 
Sbjct: 444 RVLHLAHKDLTVL---CHLEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALE 499

Query: 158 ALSADSLDWLTGLVSLKHLAMNRVDLSLVGSEWLGILKNLPNLTELHLS 206
            +  D +  L  L  L  L  NR    L  S  +  L + P L  L+L 
Sbjct: 500 NV--DGVANLPRLQEL-LLCNNR----LQQSAAIQPLVSCPRLVLLNLQ 541

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 46.3 bits (109), Expect = 4e-05
 Identities = 24/108 (22%), Positives = 42/108 (38%), Gaps = 5/108 (4%)

Query: 96  SLLEYLDLSFNTFNDIPIPEFLGSLENLQYLNLSEAGFTGVVPSSLGNLHRLQYFDVSAE 155
            L+ +LDLS N    +P    L +L  L+ L  S+     V    + NL RLQ   +   
Sbjct: 463 LLVTHLDLSHNRLRALP--PALAALRCLEVLQASDNALENV--DGVANLPRLQELLLCNN 518

Query: 156 LFALSADSLDWLTGLVSLKHLAMNRVDLSLVGSEWLGILKNLPNLTEL 203
                + ++  L     L  L +    L         + + LP+++ +
Sbjct: 519 RLQ-QSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSI 565

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 73.9 bits (182), Expect = 7e-15
 Identities = 38/139 (27%), Positives = 63/139 (45%), Gaps = 3/139 (2%)

Query: 588 IPLPI-VEIELLDLSNNHFSGPIPQNISGSMPNLIFLSVSGNRLTGKIPGSIGEMQLLQV 646
           IP  I      L L+NN F+      I   +P L  ++ S N++T    G+      +  
Sbjct: 26  IPEHIPQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNE 85

Query: 647 IDLSRNSISGSISSSI-GNCTFLKVLDLSYSSLSGVIPASLGQLTRLQSLHLNNNKLTGN 705
           I L+ N +  ++   +      LK L L  + ++ V   S   L+ ++ L L +N++T  
Sbjct: 86  ILLTSNRLE-NVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTV 144

Query: 706 LPSSFQNLTSLETLDLGNN 724
            P +F  L SL TL+L  N
Sbjct: 145 APGAFDTLHSLSTLNLLAN 163

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 67.4 bits (165), Expect = 1e-12
 Identities = 33/154 (21%), Positives = 53/154 (34%), Gaps = 18/154 (11%)

Query: 336 GIPSSIARLCYLKEFDLSGNNLTGSLPEILQGTDLCVSSNSPLPSLISMRLGNNHLKGKL 395
            IP   A L       L+ N  T                   LP L  +   NN +   +
Sbjct: 29  HIPQYTAEL------RLNNNEFTVLEAT---------GIFKKLPQLRKINFSNNKIT-DI 72

Query: 396 PEW-LSQLENLVELTLSYNLLQGPIPASLGNLKNLTKLNLPGNQLNGTLPETLGSLPELS 454
            E        + E+ L+ N L+         L++L  L L  N++     ++   L  + 
Sbjct: 73  EEGAFEGASGVNEILLTSNRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVR 132

Query: 455 VLDVSSNSLTGIISEIHFSRLSKLKFLGLSSNSF 488
           +L +  N +T +     F  L  L  L L +N F
Sbjct: 133 LLSLYDNQITTVAPGA-FDTLHSLSTLNLLANPF 165

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 67.0 bits (164), Expect = 1e-12
 Identities = 29/128 (22%), Positives = 64/128 (50%), Gaps = 6/128 (4%)

Query: 669 KVLDLSYSSLSGVIP-ASLGQLTRLQSLHLNNNKLTGNLPSSFQNLTSLETLDLGNNRFS 727
             L L+ +  + +       +L +L+ ++ +NNK+T     +F+  + +  + L +NR  
Sbjct: 35  AELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLE 94

Query: 728 GNIPSLLGNGFVGLRILSLRSNAFSGEIPSKL-SNLSSLQVLDLAENNLTGSIP-GSVGD 785
            N+   +  G   L+ L LRSN  +  + +     LSS+++L L +N +T ++  G+   
Sbjct: 95  -NVQHKMFKGLESLKTLMLRSNRIT-CVGNDSFIGLSSVRLLSLYDNQIT-TVAPGAFDT 151

Query: 786 LKAMAHVQ 793
           L +++ + 
Sbjct: 152 LHSLSTLN 159

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 63.1 bits (154), Expect = 3e-11
 Identities = 38/171 (22%), Positives = 64/171 (37%), Gaps = 39/171 (22%)

Query: 609 IPQNISGSMPNLIFLSVSGNRLTGKIP-GSIGEMQLLQVIDLSRNSISGSISSSIGNCTF 667
           IP++I         L ++ N  T     G   ++  L+ I+ S N I+      I    F
Sbjct: 26  IPEHIP---QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKIT-----DIEEGAF 77

Query: 668 -----LKVLDLSYSSLSGVIPASLGQLTRLQSLHLNNNKLTGNLPSSFQNLTSLETLDLG 722
                +  + L+ + L  V       L  L++L L +N++T     SF  L+S+  L L 
Sbjct: 78  EGASGVNEILLTSNRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLY 137

Query: 723 NNRFSGNIPSLLGNGFVGLRILSLRSNAFSGEIPSKLSNLSSLQVLDLAEN 773
           +N+ +                 ++   AF          L SL  L+L  N
Sbjct: 138 DNQIT-----------------TVAPGAF--------DTLHSLSTLNLLAN 163

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 46.6 bits (111), Expect = 1e-05
 Identities = 26/143 (18%), Positives = 53/143 (37%), Gaps = 13/143 (9%)

Query: 300 QILNFASNKLHGKLPSSV-ANMTSLTNFDLFDKKVEGGIPSSIARLCYLKEFDLSGNNLT 358
             L   +N+      + +   +  L   +  + K+      +      + E  L+ N L 
Sbjct: 35  AELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLE 94

Query: 359 GSLPE-ILQGTDLCVSSNSPLPSLISMRLGNNHLKGKLPEWLSQLENLVELTLSYNLLQG 417
            ++   + +G          L SL ++ L +N +     +    L ++  L+L  N +  
Sbjct: 95  -NVQHKMFKG----------LESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITT 143

Query: 418 PIPASLGNLKNLTKLNLPGNQLN 440
             P +   L +L+ LNL  N  N
Sbjct: 144 VAPGAFDTLHSLSTLNLLANPFN 166

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 45.0 bits (107), Expect = 4e-05
 Identities = 29/139 (20%), Positives = 51/139 (36%), Gaps = 8/139 (5%)

Query: 99  EYLDLSFNTFNDIPIPEFLGSLENLQYLNLSEAGFTGVVPSSLGNLHRLQYFDVSA-ELF 157
             L L+ N F  +        L  L+ +N S    T +   +      +    +++  L 
Sbjct: 35  AELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLE 94

Query: 158 ALSADSLDWLTGLVSLKHLAMNRVDLSLVGSEWLGILKNLPNLTELHLSVCGLTGSITSI 217
            +         GL SLK L +    ++ VG+        L ++  L L    +T ++   
Sbjct: 95  NVQHKMFK---GLESLKTLMLRSNRITCVGN---DSFIGLSSVRLLSLYDNQIT-TVAPG 147

Query: 218 TPVNLTSPAVLDLSLNHFN 236
               L S + L+L  N FN
Sbjct: 148 AFDTLHSLSTLNLLANPFN 166

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 43.1 bits (102), Expect = 2e-04
 Identities = 21/83 (25%), Positives = 31/83 (37%), Gaps = 3/83 (3%)

Query: 831 IDLSGNNLHGDFPT-QLTKLVGLVVLNLSRNHIGGQIPENI-SGLHQLASLDLSSNNLSG 888
           + L+ N       T    KL  L  +N S N I   I E    G   +  + L+SN L  
Sbjct: 37  LRLNNNEFTVLEATGIFKKLPQLRKINFSNNKIT-DIEEGAFEGASGVNEILLTSNRLEN 95

Query: 889 GIPSSLSSLSFLGYINLSRNQLS 911
                   L  L  + L  N+++
Sbjct: 96  VQHKMFKGLESLKTLMLRSNRIT 118

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 73.9 bits (182), Expect = 9e-15
 Identities = 34/176 (19%), Positives = 68/176 (38%), Gaps = 13/176 (7%)

Query: 613 ISGSMPNLIFLSVSGNRLTGKIPGSIGEMQLLQVIDLSRNSISGSISSSI-GNCTFLKVL 671
           I    P+   L +    L      +   +  +  I +S +     + S    N + +  +
Sbjct: 26  IPSLPPSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHI 85

Query: 672 DLSYS-SLSGVIPASLGQLTRLQSLHLNNNKLTGNLP--SSFQNLTSLETLDLGNNRFSG 728
           ++  + +L+ + P +L +L  L+ L + N  L    P  +   +      L++ +N +  
Sbjct: 86  EIRNTRNLTYIDPDALKELPLLKFLGIFNTGLK-MFPDLTKVYSTDIFFILEITDNPYMT 144

Query: 729 NIPSLLGNGFVGL----RILSLRSNAFSGEIPSKLSNLSSLQVLDLAENNLTGSIP 780
           +IP    N F GL      L L +N F+  +     N + L  + L +N     I 
Sbjct: 145 SIPV---NAFQGLCNETLTLKLYNNGFT-SVQGYAFNGTKLDAVYLNKNKYLTVID 196

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 73.1 bits (180), Expect = 2e-14
 Identities = 41/206 (19%), Positives = 80/206 (38%), Gaps = 17/206 (8%)

Query: 588 IPLPIVEIELLDLSNNHFSGPIPQNISGSMPNLIFLSVSGNRLTGKIP-GSIGEMQLLQV 646
           IP      + L L   H    IP +   ++PN+  + VS +    ++   S   +  +  
Sbjct: 26  IPSLPPSTQTLKLIETHLRT-IPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTH 84

Query: 647 IDLSRNSISGSISSSI-GNCTFLKVLDLSYSSLSGVIPA--SLGQLTRLQSLHLNNNKLT 703
           I++        I          LK L +  + L  + P    +        L + +N   
Sbjct: 85  IEIRNTRNLTYIDPDALKELPLLKFLGIFNTGLK-MFPDLTKVYSTDIFFILEITDNPYM 143

Query: 704 GNLPS-SFQNLTS-LETLDLGNNRFSGNIPSLLGNGFVGLRI--LSLRSNAFSGEIPSK- 758
            ++P  +FQ L +   TL L NN F+ ++       F G ++  + L  N +   I    
Sbjct: 144 TSIPVNAFQGLCNETLTLKLYNNGFT-SVQG---YAFNGTKLDAVYLNKNKYLTVIDKDA 199

Query: 759 LSNL-SSLQVLDLAENNLTGSIPGSV 783
              + S   +LD+++ ++T ++P   
Sbjct: 200 FGGVYSGPSLLDVSQTSVT-ALPSKG 224

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 71.6 bits (176), Expect = 7e-14
 Identities = 31/256 (12%), Positives = 74/256 (28%), Gaps = 56/256 (21%)

Query: 665 CTFLKVLDLSYSSLSGV--IPASLGQLTRLQSLHLNNNKLTGNLPSSFQNLTSLETLDLG 722
           C   +   ++   +  +  +P S       Q+L L    L      +F NL ++  + + 
Sbjct: 10  CHQEEDFRVTCKDIQRIPSLPPST------QTLKLIETHLRTIPSHAFSNLPNISRIYVS 63

Query: 723 NNRFSGNIPSLLGNGFVGLRILSLRSNAFSGEIPSK-LSNLSSLQVLDLAENNLTGSIPG 781
            +     + S        +  + +R+      I    L  L  L+ L +    L    P 
Sbjct: 64  IDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLGIFNTGLK-MFPD 122

Query: 782 SVGDLKAMAHVQNIVKYLLFGRYRGIYYEENLVINTKGSSKDTPRLFHFIDLSGNN---- 837
                                                 +   +  +F  ++++ N     
Sbjct: 123 -------------------------------------LTKVYSTDIFFILEITDNPYMTS 145

Query: 838 LHGDFPTQLTKLVGLVVLNLSRNHIGGQIPENISGLHQLASLDLSSNNLSGGIPS-SLSS 896
           +  +    L      + L L  N     +        +L ++ L+ N     I   +   
Sbjct: 146 IPVNAFQGLCNE--TLTLKLYNNGF-TSVQGYAFNGTKLDAVYLNKNKYLTVIDKDAFGG 202

Query: 897 L-SFLGYINLSRNQLS 911
           + S    +++S+  ++
Sbjct: 203 VYSGPSLLDVSQTSVT 218

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 71.2 bits (175), Expect = 9e-14
 Identities = 35/243 (14%), Positives = 75/243 (30%), Gaps = 44/243 (18%)

Query: 668 LKVLDLSYSSLSGVIPASLGQLTRLQSLHLN-NNKLTGNLPSSFQNLTSLETLDLGNNRF 726
            + L L  + L  +   +   L  +  ++++ +  L      SF NL+ +  +++ N R 
Sbjct: 33  TQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRN 92

Query: 727 SGNIPSLLGNGFVGLRILSLRSNAFSGEIP--SKLSNLSSLQVLDLAENNLTGSIPGSVG 784
              I          L+ L + +       P  +K+ +     +L++ +N    SIP    
Sbjct: 93  LTYIDPDALKELPLLKFLGIFNTGLK-MFPDLTKVYSTDIFFILEITDNPYMTSIP---- 147

Query: 785 DLKAMAHVQNIVKYLLFGRYRGIYYEENLVINTKGSSKDTPRLFHFIDLSGNNLHGDFPT 844
                                              + +        + L  N        
Sbjct: 148 ---------------------------------VNAFQGLCNETLTLKLYNNGFT-SVQG 173

Query: 845 QLTKLVGLVVLNLSRNHIGGQIPENI-SGLHQ-LASLDLSSNNLSGGIPSSLSSLSFLGY 902
                  L  + L++N     I ++   G++   + LD+S  +++      L  L  L  
Sbjct: 174 YAFNGTKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVTALPSKGLEHLKELIA 233

Query: 903 INL 905
            N 
Sbjct: 234 RNT 236

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 68.1 bits (167), Expect = 9e-13
 Identities = 30/160 (18%), Positives = 60/160 (37%), Gaps = 12/160 (7%)

Query: 596 ELLDLSNNHFSGPIPQNISGSMPNLIFLSVSGNRLTGKIPG--SIGEMQLLQVIDLSRNS 653
             +++ N      I  +    +P L FL +    L    P    +    +  +++++ N 
Sbjct: 83  THIEIRNTRNLTYIDPDALKELPLLKFLGIFNTGLK-MFPDLTKVYSTDIFFILEITDNP 141

Query: 654 ISGSISSSI--GNCTFLKVLDLSYSSLSGVIPASLGQLTRLQSLHLNNNKLTGNLPS-SF 710
              SI  +   G C     L L  +  +  +       T+L +++LN NK    +   +F
Sbjct: 142 YMTSIPVNAFQGLCNETLTLKLYNNGFT-SVQGYAFNGTKLDAVYLNKNKYLTVIDKDAF 200

Query: 711 QNLTS-LETLDLGNNRFSGNIPSLLGNGFVGLRILSLRSN 749
             + S    LD+       ++ +L   G   L+ L  R+ 
Sbjct: 201 GGVYSGPSLLDVSQT----SVTALPSKGLEHLKELIARNT 236

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 65.0 bits (159), Expect = 1e-11
 Identities = 31/166 (18%), Positives = 55/166 (33%), Gaps = 11/166 (6%)

Query: 623 LSVSGNRLTGKIPGSIGEMQLLQVIDLSRNSISGSISSSIGNCTFLKVLDLSYS-SLSGV 681
             V+   +  +IP      Q L    L    +    S +  N   +  + +S   +L  +
Sbjct: 16  FRVTCKDIQ-RIPSLPPSTQTL---KLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQL 71

Query: 682 IPASLGQLTRLQSLHLNNNKLTGNLPSS-FQNLTSLETLDLGNNRFSGNIPSLLG-NGFV 739
              S   L+++  + + N +    +     + L  L+ L + N       P L       
Sbjct: 72  ESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLGIFNTGLK-MFPDLTKVYSTD 130

Query: 740 GLRILSLRSNAFSGEIPSK-LSNLSS-LQVLDLAENNLTGSIPGSV 783
              IL +  N +   IP      L +    L L  N  T S+ G  
Sbjct: 131 IFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFT-SVQGYA 175

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 60.8 bits (148), Expect = 3e-10
 Identities = 34/224 (15%), Positives = 83/224 (37%), Gaps = 21/224 (9%)

Query: 345 CY-LKEFDLSGNNLTGSLPEILQGTDLCVSSNSPLPSLISMRLGNNHLKGKLPEWLSQLE 403
           C+  ++F ++  ++   +P +              PS  +++L   HL+       S L 
Sbjct: 10  CHQEEDFRVTCKDIQ-RIPSLP-------------PSTQTLKLIETHLRTIPSHAFSNLP 55

Query: 404 NLVELTLSYNLLQGPIPA-SLGNLKNLTKLNLPGNQLNGTLP-ETLGSLPELSVLDVSSN 461
           N+  + +S ++    + + S  NL  +T + +   +    +  + L  LP L  L + + 
Sbjct: 56  NISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLGIFNT 115

Query: 462 SLTGIISEIHFSRLSKLKFLGLSSNSFILNVSSSWIP--PFQVQSLNMRSCQLGPSFPSW 519
            L                 L ++ N ++ ++  +       +  +L + +     S   +
Sbjct: 116 GLKMFPDLTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGF-TSVQGY 174

Query: 520 LKTQQGVSFLDFS-NASISGPIPNWFWDISSKLSLLNVSLNQLQ 562
                 +  +  + N  ++    + F  + S  SLL+VS   + 
Sbjct: 175 AFNGTKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVT 218

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 57.7 bits (140), Expect = 3e-09
 Identities = 38/245 (15%), Positives = 77/245 (31%), Gaps = 27/245 (11%)

Query: 199 NLTELHLSVCGLTGSITSITPVNLTSPAVLDLSLNHFNSLFPNWLVNISTLVYVDLSDCD 258
              +  ++   +   I S+ P +  +   L L   H  ++  +   N+  +  + +S   
Sbjct: 12  QEEDFRVTCKDIQ-RIPSL-PPSTQT---LKLIETHLRTIPSHAFSNLPNISRIYVSIDV 66

Query: 259 LYGRIPIG-FGELPNLQYLSLAGNNNLSGSCSQLFRGSWKKIQILNFASNKLHGKLP--S 315
              ++    F  L  + ++ +    NL+       +     ++ L   +  L    P  +
Sbjct: 67  TLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKEL-PLLKFLGIFNTGLK-MFPDLT 124

Query: 316 SVANMTSLTNFDLFDKKVEGGIPS-SIARLC-YLKEFDLSGNNLTGSLPE-ILQGTDLCV 372
            V +       ++ D      IP  +   LC       L  N  T S+      GT    
Sbjct: 125 KVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFT-SVQGYAFNGT---- 179

Query: 373 SSNSPLPSLISMRL-GNNHLKGKLPEWLSQL-ENLVELTLSYNLLQGPIPASLGNLKNLT 430
                   L ++ L  N +L     +    +      L +S   +       L +LK L 
Sbjct: 180 -------KLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVTALPSKGLEHLKELI 232

Query: 431 KLNLP 435
             N  
Sbjct: 233 ARNTW 237

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 56.9 bits (138), Expect = 6e-09
 Identities = 42/235 (17%), Positives = 81/235 (34%), Gaps = 19/235 (8%)

Query: 101 LDLSFNTFNDIPIPEFLGSLENLQYLNLSEAGFTGVVPSSLGNLHRLQYFDVS--AELFA 158
             ++      IP         + Q L L E     +   +  NL  +    VS    L  
Sbjct: 16  FRVTCKDIQRIP-----SLPPSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQ 70

Query: 159 LSADSLDWLTGLVSLKHLAMNRVDLSLVGSEWLGILKNLPNLTELHLSVCGLTGSITSIT 218
           L + S   L+ +  +  +   R +L+ +       LK LP L  L +   GL      +T
Sbjct: 71  LESHSFYNLSKVTHI-EIRNTR-NLTYIDP---DALKELPLLKFLGIFNTGLK-MFPDLT 124

Query: 219 PV-NLTSPAVLDLSLN-HFNSLFPNWLVNIST-LVYVDLSDCDLYGRIPIGFGELPNLQY 275
            V +     +L+++ N +  S+  N    +    + + L +      +         L  
Sbjct: 125 KVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGF-TSVQGYAFNGTKLDA 183

Query: 276 LSLAGNNNLSGSCSQLFRGSWKKIQILNFASNKLHGKLPSSV-ANMTSLTNFDLF 329
           + L  N  L+      F G +    +L+ +   +   LPS    ++  L   + +
Sbjct: 184 VYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVT-ALPSKGLEHLKELIARNTW 237

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 51.2 bits (123), Expect = 5e-07
 Identities = 31/199 (15%), Positives = 72/199 (36%), Gaps = 25/199 (12%)

Query: 299 IQILNFASNKLHGKLPSSVANMTSLTNFDLFD----KKVEGGIPSSIARLCYLKEFDLSG 354
            Q L      L      + +N+ +++   +      +++E     +++++ ++   ++  
Sbjct: 33  TQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHI---EIRN 89

Query: 355 NNLTGSLP-EILQGTDLCVSSNSPLPSLISMRLGNNHLKGKLPE--WLSQLENLVELTLS 411
                 +  + L+           LP L  + + N  LK   P+   +   +    L ++
Sbjct: 90  TRNLTYIDPDALKE----------LPLLKFLGIFNTGLK-MFPDLTKVYSTDIFFILEIT 138

Query: 412 YNLLQGPIPA-SLGNLKNLTK-LNLPGNQLNGTLPETLGSLPELSVLDVSSNSLTGIISE 469
            N     IP  +   L N T  L L  N    ++     +  +L  + ++ N    +I +
Sbjct: 139 DNPYMTSIPVNAFQGLCNETLTLKLYNNGFT-SVQGYAFNGTKLDAVYLNKNKYLTVIDK 197

Query: 470 IHFSRL-SKLKFLGLSSNS 487
             F  + S    L +S  S
Sbjct: 198 DAFGGVYSGPSLLDVSQTS 216

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 43.1 bits (102), Expect = 2e-04
 Identities = 37/252 (14%), Positives = 85/252 (33%), Gaps = 49/252 (19%)

Query: 450 LPELSVLDVSSNSLTGIISEIHFSRLSKLKFLGLSSNSFILNVSSSWIPPFQVQSLNMRS 509
            P    L +    L   I    FS L  +  + +S +  +       +      +L+   
Sbjct: 30  PPSTQTLKLIETHLR-TIPSHAFSNLPNISRIYVSIDVTL-----QQLESHSFYNLSK-- 81

Query: 510 CQLGPSFPSWLKTQQGVSFLDFS-NASISGPIPNWFWDISSKLSLLNVSLNQLQGQLPNP 568
                           V+ ++     +++   P+   ++   L  L +    L+   P+ 
Sbjct: 82  ----------------VTHIEIRNTRNLTYIDPDALKELP-LLKFLGIFNTGLK-MFPDL 123

Query: 569 LNIAPFADVDFRSNLLEGPIPLPIVEIELLDLSNNHFSGPIPQNISGSMPN-LIFLSVSG 627
             +       + +++             +L++++N +   IP N    + N  + L +  
Sbjct: 124 TKV-------YSTDIFF-----------ILEITDNPYMTSIPVNAFQGLCNETLTLKLYN 165

Query: 628 NRLTGKIPGSIGEMQLLQVIDLSRNSISGSISSSI--GNCTFLKVLDLSYSSLSGVIPAS 685
           N  T  + G       L  + L++N     I      G  +   +LD+S +S++ +    
Sbjct: 166 NGFT-SVQGYAFNGTKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVTALPSKG 224

Query: 686 LGQLTRLQSLHL 697
           L  L  L + + 
Sbjct: 225 LEHLKELIARNT 236

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 72.8 bits (179), Expect = 2e-14
 Identities = 39/130 (30%), Positives = 59/130 (45%), Gaps = 3/130 (2%)

Query: 645 QVIDLSRNSISGSISSSIGNCTFLKVLDLSYSSLSGVIPASLGQLTRLQSLHLNNNKLTG 704
             I L +N+I      +      L+ +DLS + +S + P +   L  L SL L  NK+T 
Sbjct: 35  TEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKIT- 93

Query: 705 NLPSS-FQNLTSLETLDLGNNRFSGNIPSLLGNGFVGLRILSLRSNAFSGEIPSKLSNLS 763
            LP S F+ L SL+ L L  N+ +  +          L +LSL  N          S L 
Sbjct: 94  ELPKSLFEGLFSLQLLLLNANKIN-CLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLR 152

Query: 764 SLQVLDLAEN 773
           ++Q + LA+N
Sbjct: 153 AIQTMHLAQN 162

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 67.8 bits (166), Expect = 8e-13
 Identities = 36/155 (23%), Positives = 59/155 (38%), Gaps = 19/155 (12%)

Query: 336 GIPSSIARLCYLKEFDLSGNNLTGSLPEILQGTDLCVSSNSPLPSLISMRLGNNHLKGKL 395
            +P +I  +       L  N +   +P           + SP   L  + L NN +  +L
Sbjct: 29  NLPETITEI------RLEQNTIK-VIPP---------GAFSPYKKLRRIDLSNNQIS-EL 71

Query: 396 PEWL-SQLENLVELTLSYNLLQGPIPASLGNLKNLTKLNLPGNQLNGTLPETLGSLPELS 454
                  L +L  L L  N +     +    L +L  L L  N++N    +    L  L+
Sbjct: 72  APDAFQGLRSLNSLVLYGNKITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLN 131

Query: 455 VLDVSSNSLTGIISEIHFSRLSKLKFLGLSSNSFI 489
           +L +  N L  I     FS L  ++ + L+ N FI
Sbjct: 132 LLSLYDNKLQTIAKGT-FSPLRAIQTMHLAQNPFI 165

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 67.0 bits (164), Expect = 2e-12
 Identities = 37/148 (25%), Positives = 61/148 (41%), Gaps = 14/148 (9%)

Query: 609 IPQNISGSMPNLIFLSVSGNRLTGKIPGSIGEMQLLQVIDLSRNSISGSISSSIGNCTF- 667
           IP N+      +  + +  N +    PG+    + L+ IDLS N IS      +    F 
Sbjct: 26  IPTNLP---ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQIS-----ELAPDAFQ 77

Query: 668 ----LKVLDLSYSSLSGVIPASLGQLTRLQSLHLNNNKLTGNLPSSFQNLTSLETLDLGN 723
               L  L L  + ++ +  +    L  LQ L LN NK+      +FQ+L +L  L L +
Sbjct: 78  GLRSLNSLVLYGNKITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYD 137

Query: 724 NRFSGNIPSLLGNGFVGLRILSLRSNAF 751
           N+    I     +    ++ + L  N F
Sbjct: 138 NKLQ-TIAKGTFSPLRAIQTMHLAQNPF 164

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 60.0 bits (146), Expect = 4e-10
 Identities = 26/117 (22%), Positives = 46/117 (39%), Gaps = 26/117 (22%)

Query: 669 KVLDLSYSSLSGVIPASLGQLTRLQSLHLNNNKLTGNLPSSFQNLTSLETLDLGNNRFSG 728
             + L  +++  + P +     +L+ + L+NN+++   P +FQ L SL +L L  N+   
Sbjct: 35  TEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNK--- 91

Query: 729 NIPSLLGNGFVGLRILSLRSNAFSGEIPSKLSNLSSLQVLDLAENNLTGSIPGSVGD 785
                         I  L  + F G        L SLQ+L L  N +   +      
Sbjct: 92  --------------ITELPKSLFEG--------LFSLQLLLLNANKIN-CLRVDAFQ 125

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 46.6 bits (111), Expect = 1e-05
 Identities = 34/170 (20%), Positives = 56/170 (32%), Gaps = 45/170 (26%)

Query: 742 RILSLRSNAFSGEIPSK-LSNLSSLQVLDLAENNLTGSIPGSVGDLKAMAHVQNIVKYLL 800
             + L  N     IP    S    L+ +DL+ N ++  +                     
Sbjct: 35  TEIRLEQNTIK-VIPPGAFSPYKKLRRIDLSNNQIS-ELAPDA----------------- 75

Query: 801 FGRYRGIYYEENLVINTKGSSKDTPRLFHFIDLSGNNLHGDFPTQL-TKLVGLVVLNLSR 859
           F   R      +L               + + L GN +  + P  L   L  L +L L+ 
Sbjct: 76  FQGLR------SL---------------NSLVLYGNKIT-ELPKSLFEGLFSLQLLLLNA 113

Query: 860 NHIGGQIPENI-SGLHQLASLDLSSNNLSGGIPSSLSSLSFLGYINLSRN 908
           N I   +  +    LH L  L L  N L      + S L  +  ++L++N
Sbjct: 114 NKIN-CLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQN 162

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 45.4 bits (108), Expect = 3e-05
 Identities = 21/82 (25%), Positives = 35/82 (42%), Gaps = 2/82 (2%)

Query: 831 IDLSGNNLHGDFPTQLTKLVGLVVLNLSRNHIGGQIPENI-SGLHQLASLDLSSNNLSGG 889
           I L  N +    P   +    L  ++LS N I  ++  +   GL  L SL L  N ++  
Sbjct: 37  IRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQI-SELAPDAFQGLRSLNSLVLYGNKITEL 95

Query: 890 IPSSLSSLSFLGYINLSRNQLS 911
             S    L  L  + L+ N+++
Sbjct: 96  PKSLFEGLFSLQLLLLNANKIN 117

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 44.6 bits (106), Expect = 5e-05
 Identities = 39/179 (21%), Positives = 62/179 (34%), Gaps = 40/179 (22%)

Query: 213 SITSITPVNL-TSPAVLDLSLNHFNSLFPNWLVNISTLVYVDLSDCDLYGRIPIG-FGEL 270
            +T I P NL  +   + L  N    + P        L  +DLS+  +   +    F  L
Sbjct: 22  GLTEI-PTNLPETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQI-SELAPDAFQGL 79

Query: 271 PNLQYLSLAGNNNLSGSCSQLFRGSWKKIQILNFASNKLHGKLPSSVANMTSLTNFDLFD 330
            +L  L L   N ++     LF G    +Q+L   +NK++  L             D F 
Sbjct: 80  RSLNSLVL-YGNKITELPKSLFEGL-FSLQLLLLNANKIN-CLRV-----------DAFQ 125

Query: 331 KKVEGGIPSSIARLCYLKEFDLSGNNLTGSLPEILQGTDLCVSSNSPLPSLISMRLGNN 389
                        L  L    L  N L  ++ +          + SPL ++ +M L  N
Sbjct: 126 D------------LHNLNLLSLYDNKLQ-TIAK---------GTFSPLRAIQTMHLAQN 162

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Length = 594

 Score = 74.2 bits (182), Expect = 1e-13
 Identities = 68/420 (16%), Positives = 131/420 (31%), Gaps = 33/420 (7%)

Query: 93  SSGSLLEYLDLSFNTFNDIPIPEFLGSLENLQYLNLSE-AGFTGVVPSSLG-NLHRLQYF 150
           SS + LE + L      D  +     S +N + L LS   GF+    +++      L+  
Sbjct: 102 SSYTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKEL 161

Query: 151 DVSAELFALSADSLDWLT----GLVSLKHLAMNRVDLSLVGSEWLGILKNLPNLTELHLS 206
           D+      +   S  WL+       SL  L ++ +   +  S    ++   PNL  L L+
Sbjct: 162 DLR--ESDVDDVSGHWLSHFPDTYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLN 219

Query: 207 VCGLTGSITSITPVNLTSPAVLDLSLNHFN--------SLFPNWLVNISTLVYVDLSDCD 258
                  +  +  +   +P + +L    +         S     L     L  +      
Sbjct: 220 RA---VPLEKLATLLQRAPQLEELGTGGYTAEVRPDVYSGLSVALSGCKELRCLSGFWDA 276

Query: 259 LYGRIPIGFGELPNLQYLSLAGNNNLSGSCSQLFRGSWKKIQILNFASNKLHGKLPSSVA 318
           +   +P  +     L  L+L+     S    +L      K+Q L          L    +
Sbjct: 277 VPAYLPAVYSVCSRLTTLNLSYATVQSYDLVKLLCQC-PKLQRLWVLDYIEDAGLEVLAS 335

Query: 319 NMTSLTNFDLFDKKVEGGIP---------SSIARLC-YLKEFDLSGNNLTG-SLPEILQG 367
               L    +F  +     P          S++  C  L+        +T  +L  I + 
Sbjct: 336 TCKDLRELRVFPSEPFVMEPNVALTEQGLVSVSMGCPKLESVLYFCRQMTNAALITIARN 395

Query: 368 -TDLCVSSNSPLPSLISMRLGNNHLKGKLPEWLSQLENLVELTLSYNLLQGPIPASLGNL 426
             ++       +       L    L       +   ++L  L+LS  L            
Sbjct: 396 RPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSGLLTDKVFEYIGTYA 455

Query: 427 KNLTKLNLPGNQL-NGTLPETLGSLPELSVLDVSSNSLTGIISEIHFSRLSKLKFLGLSS 485
           K +  L++      +  +   L     L  L++            + S+L  ++ L +SS
Sbjct: 456 KKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGDKALLANASKLETMRSLWMSS 515

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Length = 594

 Score = 65.7 bits (160), Expect = 5e-11
 Identities = 71/605 (11%), Positives = 179/605 (29%), Gaps = 110/605 (18%)

Query: 147 LQYFDVSAELFALSADSLDWLTGLVS---LKHLAMNRVDLSLVGSEWL---GILKNLPNL 200
             +  +  +  ++S         LV     +     R  + +     +    +++  P +
Sbjct: 18  FSFIQLDKDRNSVS---------LVCKSWYEIERWCRRKVFIGNCYAVSPATVIRRFPKV 68

Query: 201 TELHLSVCGLTGSITSITPVNLTSPAVLDLSLNHFNSLFPNWLVNISTLVYVDLSDCDLY 260
             + L              V       +   +   +S +         L  + L    + 
Sbjct: 69  RSVELKGKP---HFADFNLVPDGWGGYVYPWIEAMSSSYTW-------LEEIRLKRMVVT 118

Query: 261 GRIPIGFGE-LPNLQYLSLAGNNNLSGSCSQLFRGSWKKIQILNFASNKLHGKLPSSVAN 319
                   +   N + L L+     S         + + ++ L+   +           +
Sbjct: 119 DDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRES-----------D 167

Query: 320 MTSLTNFDLFDKKVEGGIPSSIARLC-YLKEFDLSG--NNLT-GSLPEILQGTDLCVSSN 375
           +  ++   L          S        L   ++S   + ++  +L  ++          
Sbjct: 168 VDDVSGHWL----------SHFPDTYTSLVSLNISCLASEVSFSALERLVTR-------- 209

Query: 376 SPLPSLISMRLGNNHLKGKLPEWLSQLENLVELTLSY------NLLQGPIPASLGNLKNL 429
              P+L S++L       KL   L +   L EL            +   +  +L   K L
Sbjct: 210 --CPNLKSLKLNRAVPLEKLATLLQRAPQLEELGTGGYTAEVRPDVYSGLSVALSGCKEL 267

Query: 430 TKLNLPGNQLNGTLPETLGSLPELSVLDVSSNSLTGIISEIHFSRLSKLKFLGLSSNSFI 489
             L+   + +   LP        L+ L++S  ++          +  KL+ L +      
Sbjct: 268 RCLSGFWDAVPAYLPAVYSVCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLD---- 323

Query: 490 LNVSSSWIPPF-----QVQSLNMRSCQLGPSFPSWLKTQQGVSFL--------------- 529
             +  + +         ++ L +   +     P+   T+QG+  +               
Sbjct: 324 -YIEDAGLEVLASTCKDLRELRVFPSEPFVMEPNVALTEQGLVSVSMGCPKLESVLYFCR 382

Query: 530 DFSNASISGPIPNWFWDISSKLSLLNVSLNQLQGQLPNPLNIAPFADVDFRSNLLEGPIP 589
             +NA++     N        ++   + + + +      L      D+ F + +      
Sbjct: 383 QMTNAALITIARNR-----PNMTRFRLCIIEPKAPDYLTLEP---LDIGFGAIVEHCK-- 432

Query: 590 LPIVEIELLDLSNNHFSGPIPQNISGSMPNLIFLSVSGNRLTGKIPGSIGE-MQLLQVID 648
               ++  L LS    +  + + I      +  LSV+    +      +      L+ ++
Sbjct: 433 ----DLRRLSLS-GLLTDKVFEYIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLE 487

Query: 649 LSRNSISG-SISSSIGNCTFLKVLDLSYSSLSGVIPASLGQ-LTRLQSLHLNNNKLTGNL 706
           +        ++ ++      ++ L +S  S+S      LGQ + +L    ++      + 
Sbjct: 488 IRDCPFGDKALLANASKLETMRSLWMSSCSVSFGACKLLGQKMPKLNVEVIDERGAPDSR 547

Query: 707 PSSFQ 711
           P S  
Sbjct: 548 PESCP 552

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Length = 594

 Score = 52.2 bits (125), Expect = 7e-07
 Identities = 42/277 (15%), Positives = 86/277 (31%), Gaps = 18/277 (6%)

Query: 640 EMQLLQVIDLS-RNSISGSISSSIGNCTFLKVLDLSYSSLSGVIPASLGQLTRLQSLHLN 698
           E++      +   N  + S ++ I     ++ ++L                     +   
Sbjct: 39  EIERWCRRKVFIGNCYAVSPATVIRRFPKVRSVELKGKP----------HFADFNLVPDG 88

Query: 699 NNKLTGN-LPSSFQNLTSLETLDLGNNRFSGNIPSLLGNGFVGLRILSLRS-NAFSGE-I 755
                   + +   + T LE + L     + +   L+   F   ++L L S   FS + +
Sbjct: 89  WGGYVYPWIEAMSSSYTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGFSTDGL 148

Query: 756 PSKLSNLSSLQVLDLAENNLTGSIPGSVGDLKAMAHVQNIVKYLLFGRYRGIYYEENLVI 815
            +  +   +L+ LDL E+++      S   L         +  L             L  
Sbjct: 149 AAIAATCRNLKELDLRESDVDDV---SGHWLSHFPDTYTSLVSLNISCLASEVSFSALER 205

Query: 816 NTKGSSK-DTPRLFHFIDLSGNNLHGDFPTQLTKLVGLVVLNLSRNHIGGQIPENISGLH 874
                    + +L   + L           QL +L         R  +   +   +SG  
Sbjct: 206 LVTRCPNLKSLKLNRAVPLEKLATLLQRAPQLEELGTGGYTAEVRPDVYSGLSVALSGCK 265

Query: 875 QLASLDLSSNNLSGGIPSSLSSLSFLGYINLSRNQLS 911
           +L  L    + +   +P+  S  S L  +NLS   + 
Sbjct: 266 ELRCLSGFWDAVPAYLPAVYSVCSRLTTLNLSYATVQ 302

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Length = 594

 Score = 51.4 bits (123), Expect = 1e-06
 Identities = 46/346 (13%), Positives = 111/346 (32%), Gaps = 38/346 (10%)

Query: 595 IELLDLSNNHF---SGPIPQNISGSMPNLIFLSVSG--NRLTGKIPGSIGE-MQLLQVID 648
           ++ LDL  +     SG    +   +  +L+ L++S   + ++      +      L+ + 
Sbjct: 158 LKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLK 217

Query: 649 LSRNSISGSISSSIGNCTFLKVLDLSYSSLSG------VIPASLGQLTRLQSLHLNNNKL 702
           L+R      +++ +     L+ L     +          +  +L     L+ L    + +
Sbjct: 218 LNRAVPLEKLATLLQRAPQLEELGTGGYTAEVRPDVYSGLSVALSGCKELRCLSGFWDAV 277

Query: 703 TGNLPSSFQNLTSLETLDLGNNRFSGNIPSLLGNGFVGLRILSLRSNAFSGEIPSKLSNL 762
              LP+ +   + L TL+L            L      L+ L +        +    S  
Sbjct: 278 PAYLPAVYSVCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDYIEDAGLEVLASTC 337

Query: 763 SSLQVLDLAE-NNLTGSIPGSVGD--LKAMAHVQNIVKYLLFGRYRGIYYEENLVINTKG 819
             L+ L +            ++ +  L +++     ++ +L+   +         +    
Sbjct: 338 KDLRELRVFPSEPFVMEPNVALTEQGLVSVSMGCPKLESVLYFCRQ---------MTNAA 388

Query: 820 ---SSKDTPRLFHFIDLSGNNLHGDFPTQLTKLVGLVVL-----NLSRNHIGGQI----P 867
               +++ P +  F          D+ T     +G   +     +L R  + G +     
Sbjct: 389 LITIARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSGLLTDKVF 448

Query: 868 ENIS-GLHQLASLDLSSNNLSG-GIPSSLSSLSFLGYINLSRNQLS 911
           E I     ++  L ++    S  G+   LS    L  + +      
Sbjct: 449 EYIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFG 494

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Length = 594

 Score = 47.6 bits (113), Expect = 2e-05
 Identities = 43/279 (15%), Positives = 81/279 (29%), Gaps = 29/279 (10%)

Query: 96  SLLEYLDLSFNTFNDIPIPEFLGSLENLQYLNLSEAGFTGVVPSSLGNLHRLQYFDVSAE 155
           S L  L+LS+ T     + + L     LQ L + +      +         L+   V   
Sbjct: 289 SRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDYIEDAGLEVLASTCKDLRELRVF-P 347

Query: 156 LFALSADSLDWLTGLVSLKHLAMNRVDLSLVGSEWLGI--------LKNLPNLTELHLSV 207
                 +    LT    L  ++M    L  V      +         +N PN+T   L +
Sbjct: 348 SEPFVMEPNVALTE-QGLVSVSMGCPKLESVLYFCRQMTNAALITIARNRPNMTRFRLCI 406

Query: 208 CGLTGSITSITPVNLTSPAVLDLSLNHFNSLFPNWLVNISTLVYVDLSDC-DLYGRIPIG 266
                        +  +   LD+          +       L  + LS          IG
Sbjct: 407 IEPKAP-------DYLTLEPLDIGFGAIVEHCKD-------LRRLSLSGLLTDKVFEYIG 452

Query: 267 FGELPNLQYLSLAGNNNLSGSCSQLFRGSWKKIQILNFASNKLHGK-LPSSVANMTSLTN 325
                 ++ LS+A   +       +  G    ++ L         K L ++ + + ++ +
Sbjct: 453 TY-AKKMEMLSVAFAGDSDLGMHHVLSGC-DSLRKLEIRDCPFGDKALLANASKLETMRS 510

Query: 326 FDLFDKKV-EGGIPSSIARLCYLKEFDLSGNNLTGSLPE 363
             +    V  G       ++  L    +       S PE
Sbjct: 511 LWMSSCSVSFGACKLLGQKMPKLNVEVIDERGAPDSRPE 549

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Length = 594

 Score = 44.1 bits (104), Expect = 2e-04
 Identities = 73/508 (14%), Positives = 155/508 (30%), Gaps = 77/508 (15%)

Query: 319 NMTSLTNFDLFDKKVEGGIPSSIARLC-YLKEFDLSGNNLTGSLPEILQG-----TDLCV 372
            +       +F        P+++ R    ++  +L G         +  G          
Sbjct: 39  EIERWCRRKVFIGNCYAVSPATVIRRFPKVRSVELKGKPHFADFNLVPDGWGGYVYPWIE 98

Query: 373 SSNSPLPSLISMRLGNNHLKGKLPEWLSQ-LENLVELTLSY--NLLQGPIPASLGNLKNL 429
           + +S    L  +RL    +     E +++  +N   L LS         + A     +NL
Sbjct: 99  AMSSSYTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNL 158

Query: 430 TKLNLPGNQLNGTLPETLGSL----PELSVLDVSSNSLTGIISEIHFSRLSK----LKFL 481
            +L+L  + ++      L         L  L++S   L   +S     RL      LK L
Sbjct: 159 KELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISC--LASEVSFSALERLVTRCPNLKSL 216

Query: 482 GLSSNSFILNVSSSWIPPFQVQSLNMRSCQLGPSFPSWLKTQQGVS----------FLDF 531
            L+    +  +++      Q++ L             +      +S          F D 
Sbjct: 217 KLNRAVPLEKLATLLQRAPQLEELGTGGYTAEVRPDVYSGLSVALSGCKELRCLSGFWDA 276

Query: 532 SNASISGPIPNWFWDISSKLSLLNVSLNQLQGQLPNPLNIAPFADVDFRSNLLEGPIPLP 591
             A +            S+L+ LN+S   +Q               D    L + P    
Sbjct: 277 VPAYLPAVYSV-----CSRLTTLNLSYATVQ-------------SYDLVKLLCQCP---- 314

Query: 592 IVEIELLDLSNNHFSGPIPQNISGSMPNLIFLSVSG---------NRLTGKIPGSIGE-M 641
             +++ L + +      + + ++ +  +L  L V             LT +   S+    
Sbjct: 315 --KLQRLWVLDYIEDAGL-EVLASTCKDLRELRVFPSEPFVMEPNVALTEQGLVSVSMGC 371

Query: 642 QLLQVIDLSRNSISG-SISSSIGNCTFLKVLDLSYSSLSGV-----------IPASLGQL 689
             L+ +      ++  ++ +   N   +    L                     A +   
Sbjct: 372 PKLESVLYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHC 431

Query: 690 TRLQSLHLNNNKLTGNLPSSFQNLTSLETLDLGNNRFSGNIPSLLGNGFVGLRILSLRSN 749
             L+ L L+                 +E L +     S      + +G   LR L +R  
Sbjct: 432 KDLRRLSLSGLLTDKVFEYIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDC 491

Query: 750 AFSGE-IPSKLSNLSSLQVLDLAENNLT 776
            F  + + +  S L +++ L ++  +++
Sbjct: 492 PFGDKALLANASKLETMRSLWMSSCSVS 519

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 70.1 bits (172), Expect = 3e-13
 Identities = 61/285 (21%), Positives = 102/285 (35%), Gaps = 64/285 (22%)

Query: 616 SMPNLIFLSVSGNRLTGKIPGSIGEMQLLQVIDLSRNSISGSISSSIGNCTFLKVLDLSY 675
            + N +  ++    +T  +     E+  +Q  +   ++I  S++  +   T LK L LS+
Sbjct: 17  GLANAVKQNLGKQSVT-DLVS-QKELSGVQNFNGDNSNIQ-SLAG-MQFFTNLKELHLSH 72

Query: 676 SSLSGVIPASLGQLTRLQSLHLNNNKLTGNLPSSFQNLTSLETLDLGNNRFSGNIPSLLG 735
           + +S + P  L  LT+L+ L +N N+L  NL         L  L L NN    +  SL  
Sbjct: 73  NQISDLSP--LKDLTKLEELSVNRNRLK-NLNGI--PSACLSRLFLDNNELR-DTDSL-- 124

Query: 736 NGFVGLRILSLRSNAFSGEIPSKLSNLSSLQVLDLAENNLTGSIPGSVGDLKAMAHVQNI 795
                L ILS+R+N     I   L  LS L+VLDL  N +T        +   +  ++ +
Sbjct: 125 IHLKNLEILSIRNNKLK-SIVM-LGFLSKLEVLDLHGNEIT--------NTGGLTRLKKV 174

Query: 796 VKYLLFGRYRGIYYEENLVINTKGSSKDTPRLFHFIDLSGNNLHGDFPTQLTKLVGLVVL 855
                                              IDL+G     +      +   L + 
Sbjct: 175 NW---------------------------------IDLTGQKCVNEPVKYQPE---LYIT 198

Query: 856 NLSRNHIGGQI-PENISGLHQLASLDLSSNNLSGGIPSSLSSLSF 899
           N  ++  G  I P  IS         +         P     +S+
Sbjct: 199 NTVKDPDGRWISPYYISNGGSYVDGCVLWEL-----PVYTDEVSY 238

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 68.1 bits (167), Expect = 1e-12
 Identities = 35/186 (18%), Positives = 71/186 (38%), Gaps = 19/186 (10%)

Query: 593 VEIELLDLSNNHFSGPIPQNISG--SMPNLIFLSVSGNRLTGKIPGSIGEMQLLQVIDLS 650
             ++  +  N++       +++G     NL  L +S N+++  +   + ++  L+ + ++
Sbjct: 41  SGVQNFNGDNSNIQ-----SLAGMQFFTNLKELHLSHNQIS-DLSP-LKDLTKLEELSVN 93

Query: 651 RNSISGSISSSIGNCTFLKVLDLSYSSLSGVIPASLGQLTRLQSLHLNNNKLTGNLPSSF 710
           RN +  +++  I +   L  L L  + L       L  L  L+ L + NNKL  ++    
Sbjct: 94  RNRLK-NLNG-IPSAC-LSRLFLDNNELRDTDS--LIHLKNLEILSIRNNKLK-SI-VML 146

Query: 711 QNLTSLETLDLGNNRFSGNIPSLLGNGFVGLRILSLRSNAFSGEIPSKLSNLSSLQVLDL 770
             L+ LE LDL  N  + N   L       +  + L       E       L     +  
Sbjct: 147 GFLSKLEVLDLHGNEIT-NTGGL--TRLKKVNWIDLTGQKCVNEPVKYQPELYITNTVKD 203

Query: 771 AENNLT 776
            +    
Sbjct: 204 PDGRWI 209

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 57.3 bits (139), Expect = 5e-09
 Identities = 41/243 (16%), Positives = 79/243 (32%), Gaps = 59/243 (24%)

Query: 660 SSIGNCTFLKVLDLSYSSLSGVIPASLGQLTRLQSLHLNNNKLTGNLPSSFQNLTSLETL 719
                       +L   S++ ++     +L+ +Q+ + +N+ +  +L +  Q  T+L+ L
Sbjct: 13  FPDPGLANAVKQNLGKQSVTDLVS--QKELSGVQNFNGDNSNIQ-SL-AGMQFFTNLKEL 68

Query: 720 DLGNNRFSGNIPSLLGNGFVGLRILSLRSNAFSGEIPSKLSNLS--SLQVLDLAENNLTG 777
            L +N+ S ++  L       L  LS+  N         L+ +    L  L L  N L  
Sbjct: 69  HLSHNQIS-DLSPL--KDLTKLEELSVNRNRLK-----NLNGIPSACLSRLFLDNNELR- 119

Query: 778 SIPGSVGDLKAMAHVQNIVKYLLFGRYRGIYYEENLVINTKGSSKDTPRLFHFIDLSGNN 837
                  D  ++ H++N+                                   + +  N 
Sbjct: 120 -------DTDSLIHLKNL---------------------------------EILSIRNNK 139

Query: 838 LHGDFPTQLTKLVGLVVLNLSRNHIGGQIPENISGLHQLASLDLSSNNLSGGIPSSLSSL 897
           L       L  L  L VL+L  N I       ++ L ++  +DL+              L
Sbjct: 140 L--KSIVMLGFLSKLEVLDLHGNEI--TNTGGLTRLKKVNWIDLTGQKCVNEPVKYQPEL 195

Query: 898 SFL 900
              
Sbjct: 196 YIT 198

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 52.3 bits (126), Expect = 2e-07
 Identities = 31/148 (20%), Positives = 55/148 (37%), Gaps = 22/148 (14%)

Query: 339 SSIARLCYLKEFDLSGNNLTGSLPEILQGTDLCVSSNSPLPSLISMRLGNNHLKGKLPEW 398
                L    + +L   ++T             + S   L  + +    N++++  L   
Sbjct: 13  FPDPGLANAVKQNLGKQSVTD------------LVSQKELSGVQNFNGDNSNIQ-SL-AG 58

Query: 399 LSQLENLVELTLSYNLLQGPIPASLGNLKNLTKLNLPGNQLNGTLPETLGSLPELSVLDV 458
           +    NL EL LS+N +    P  L +L  L +L++  N+L             LS L +
Sbjct: 59  MQFFTNLKELHLSHNQISDLSP--LKDLTKLEELSVNRNRLKNLNG---IPSACLSRLFL 113

Query: 459 SSNSLTGIISEIHFSRLSKLKFLGLSSN 486
            +N L    S      L  L+ L + +N
Sbjct: 114 DNNELRDTDS---LIHLKNLEILSIRNN 138

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 50.4 bits (121), Expect = 9e-07
 Identities = 29/226 (12%), Positives = 65/226 (28%), Gaps = 77/226 (34%)

Query: 686 LGQLTRLQSLHLNNNKLTGNLPSSFQNLTSLETLDLGNNRFSGNIPSLLGNGFVGLRILS 745
              L      +L    +T     S + L+ ++  +  N+    ++  +            
Sbjct: 15  DPGLANAVKQNLGKQSVTD--LVSQKELSGVQNFNGDNSNIQ-SLAGM------------ 59

Query: 746 LRSNAFSGEIPSKLSNLSSLQVLDLAENNLTGSIPGSVGDLKAMAHVQNIVKYLLFGRYR 805
                            ++L+ L L+ N ++        DL  +  +  + +        
Sbjct: 60  --------------QFFTNLKELHLSHNQIS--------DLSPLKDLTKLEE-------- 89

Query: 806 GIYYEENLVINTKGSSKDTPRLFHFIDLSGNNLHGDFPTQLTKLVGLVVLNLSRNHIGGQ 865
                                    + ++ N L          L     L L  N +  +
Sbjct: 90  -------------------------LSVNRNRLKNLNGIPSACLS---RLFLDNNEL--R 119

Query: 866 IPENISGLHQLASLDLSSNNLSGGIPSSLSSLSFLGYINLSRNQLS 911
             +++  L  L  L + +N L       L  LS L  ++L  N+++
Sbjct: 120 DTDSLIHLKNLEILSIRNNKLK--SIVMLGFLSKLEVLDLHGNEIT 163

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 50.4 bits (121), Expect = 9e-07
 Identities = 35/177 (19%), Positives = 63/177 (35%), Gaps = 22/177 (12%)

Query: 106 NTFNDIPIPEFLGSLENLQYLNLSEAGFTGVVPSSLGNLHRLQYFDVSAELFALSADSLD 165
              N +        L N    NL +   T +V      L  +Q F+           SL 
Sbjct: 7   TPINQV---FPDPGLANAVKQNLGKQSVTDLVS--QKELSGVQNFNGDNSNIQ----SLA 57

Query: 166 WLTGLVSLKHLAMNRVDLSLVGSEWLGILKNLPNLTELHLSVCGLTGSITSITPVNLTSP 225
            +    +LK L ++   +S +       LK+L  L EL ++       + ++  +     
Sbjct: 58  GMQFFTNLKELHLSHNQISDLSP-----LKDLTKLEELSVNRN----RLKNLNGIPSACL 108

Query: 226 AVLDLSLNHFNSLFPNWLVNISTLVYVDLSDCDLYGRIPIGFGELPNLQYLSLAGNN 282
           + L L  N         L+++  L  + + +  L  +  +  G L  L+ L L GN 
Sbjct: 109 SRLFLDNNELRDTDS--LIHLKNLEILSIRNNKL--KSIVMLGFLSKLEVLDLHGNE 161

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 47.7 bits (114), Expect = 7e-06
 Identities = 44/280 (15%), Positives = 81/280 (28%), Gaps = 65/280 (23%)

Query: 167 LTGLVSLKHLAMNRVDLSLVGSEWLGILKNLPNLTELHLSVCGLTGSITSITPV-NLTSP 225
             GL +     + +  ++ + S      K L  +   +         I S+  +   T+ 
Sbjct: 15  DPGLANAVKQNLGKQSVTDLVS-----QKELSGVQNFNGDNSN----IQSLAGMQFFTNL 65

Query: 226 AVLDLSLNHFNSLFPNWLVNISTLVYVDLSDCDLYGRIPIGFGELPNLQYLSLAGNN--N 283
             L LS N            IS L                   +L  L+ LS+  N   N
Sbjct: 66  KELHLSHN-----------QISDL---------------SPLKDLTKLEELSVNRNRLKN 99

Query: 284 LSGSCSQLFRGSWKKIQILNFASNKLHGKLPSSVANMTSLTNFDLFDKKVEGGIPSSIAR 343
           L+G            +  L   +N+L      S+ ++ +L    + + K++      +  
Sbjct: 100 LNG-------IPSACLSRLFLDNNELRD--TDSLIHLKNLEILSIRNNKLK--SIVMLGF 148

Query: 344 LCYLKEFDLSGNNLTGSLPEILQGTDLCVSSNSPLPSLISMRLGNNHLKGKLPEWLSQLE 403
           L  L+  DL GN +T                 + L  +  + L          E +    
Sbjct: 149 LSKLEVLDLHGNEIT------------NTGGLTRLKKVNWIDLTGQKCV---NEPVKYQP 193

Query: 404 NLVELTLSYNLLQGPI-PASLGNLKNLTKLNLPGNQLNGT 442
            L       +     I P  + N  +     +       T
Sbjct: 194 ELYITNTVKDPDGRWISPYYISNGGSYVDGCVLWELPVYT 233

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 47.3 bits (113), Expect = 1e-05
 Identities = 28/186 (15%), Positives = 62/186 (33%), Gaps = 24/186 (12%)

Query: 98  LEYLDLSFNTFNDIPIPEFLGSLENLQYLNLSEAGFTGVVPSSLGNLHRLQYFDVSAELF 157
               +L   +  D+        L  +Q  N   +    +  + +     L+         
Sbjct: 21  AVKQNLGKQSVTDL---VSQKELSGVQNFNGDNSNIQSL--AGMQFFTNLKELH------ 69

Query: 158 ALSADSLDWLTGLVSLKHLAMNRVDLSLVGSEWLGILKNLPNLTELHLSVCGLTGSITSI 217
            LS + +  L+ L  L  L    + ++    + L  + +   L+ L L        +   
Sbjct: 70  -LSHNQISDLSPLKDLTKL--EELSVNRNRLKNLNGIPSA-CLSRLFLDNN----ELRDT 121

Query: 218 TPV-NLTSPAVLDLSLNHFNSLFPNWLVNISTLVYVDLSDCDLYGRIPIGFGELPNLQYL 276
             + +L +  +L +  N   S+    L  +S L  +DL   ++     +    L  + ++
Sbjct: 122 DSLIHLKNLEILSIRNNKLKSIVM--LGFLSKLEVLDLHGNEITNTGGL--TRLKKVNWI 177

Query: 277 SLAGNN 282
            L G  
Sbjct: 178 DLTGQK 183

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251

 Score = 65.9 bits (161), Expect = 6e-12
 Identities = 45/152 (29%), Positives = 72/152 (47%), Gaps = 7/152 (4%)

Query: 645 QVIDLSRNSISGSISSSIGNCTFLKVLDLSYSSLSGVIPASLGQLTRLQSLHLNNNKLTG 704
           + +DL    ++    ++    T L  L+L Y+ L  +       LT L +L L NN+L  
Sbjct: 38  EKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLA- 96

Query: 705 NLPSS-FQNLTSLETLDLGNNRFSGNIPSLLGNGFVGLRILSLRSNAFSGEIPSKL-SNL 762
           +LP   F +LT L+ L LG N+    +PS + +    L+ L L +N     IP+     L
Sbjct: 97  SLPLGVFDHLTQLDKLYLGGNQLKS-LPSGVFDRLTKLKELRLNTNQLQ-SIPAGAFDKL 154

Query: 763 SSLQVLDLAENNLTGSIPGSVGD-LKAMAHVQ 793
           ++LQ L L+ N L  S+P    D L  +  + 
Sbjct: 155 TNLQTLSLSTNQLQ-SVPHGAFDRLGKLQTIT 185

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251

 Score = 63.6 bits (155), Expect = 4e-11
 Identities = 39/166 (23%), Positives = 66/166 (39%), Gaps = 6/166 (3%)

Query: 609 IPQNISGSMPNLIFLSVSGNRLTGKIPGSIGEMQLLQVIDLSRNSISGSISSSIGNC-TF 667
           +P  I      L    +    L      +   +  L  ++L  N +  ++S+ + +  T 
Sbjct: 29  VPSGIPADTEKL---DLQSTGLATLSDATFRGLTKLTWLNLDYNQLQ-TLSAGVFDDLTE 84

Query: 668 LKVLDLSYSSLSGVIPASLGQLTRLQSLHLNNNKLTGNLPSSFQNLTSLETLDLGNNRFS 727
           L  L L+ + L+ +       LT+L  L+L  N+L       F  LT L+ L L  N+  
Sbjct: 85  LGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQ 144

Query: 728 GNIPSLLGNGFVGLRILSLRSNAFSGEIPSKLSNLSSLQVLDLAEN 773
            +IP+   +    L+ LSL +N            L  LQ + L  N
Sbjct: 145 -SIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGN 189

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251

 Score = 62.8 bits (153), Expect = 7e-11
 Identities = 41/164 (25%), Positives = 77/164 (46%), Gaps = 9/164 (5%)

Query: 588 IPLPIVEIELLDLSNNHFSGPIPQNISGSMPNLIFLSVSGNRLTGKIPGSIGEMQLLQVI 647
           IP    + E LDL +   +  +       +  L +L++  N+L     G   ++  L  +
Sbjct: 33  IP---ADTEKLDLQSTGLAT-LSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTL 88

Query: 648 DLSRNSISGSISSSI-GNCTFLKVLDLSYSSLSGVIPASLGQLTRLQSLHLNNNKLTGNL 706
            L+ N ++ S+   +  + T L  L L  + L  +      +LT+L+ L LN N+L  ++
Sbjct: 89  GLANNQLA-SLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQ-SI 146

Query: 707 PSS-FQNLTSLETLDLGNNRFSGNIPSLLGNGFVGLRILSLRSN 749
           P+  F  LT+L+TL L  N+   ++P    +    L+ ++L  N
Sbjct: 147 PAGAFDKLTNLQTLSLSTNQLQ-SVPHGAFDRLGKLQTITLFGN 189

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251

 Score = 51.2 bits (123), Expect = 5e-07
 Identities = 45/154 (29%), Positives = 66/154 (42%), Gaps = 23/154 (14%)

Query: 336 GIPSSIARLCYLKEFDLSGNNLTGSLPEILQGTDLCVSSNSPLPSLISMRLGNNHLKGKL 395
           GIP+   +L      DL    L        +G          L  L  + L  N L+  L
Sbjct: 32  GIPADTEKL------DLQSTGLATLSDATFRG----------LTKLTWLNLDYNQLQ-TL 74

Query: 396 PEWL-SQLENLVELTLSYNLLQGPIPASL-GNLKNLTKLNLPGNQLNGTLPETL-GSLPE 452
              +   L  L  L L+ N L   +P  +  +L  L KL L GNQL  +LP  +   L +
Sbjct: 75  SAGVFDDLTELGTLGLANNQLAS-LPLGVFDHLTQLDKLYLGGNQLK-SLPSGVFDRLTK 132

Query: 453 LSVLDVSSNSLTGIISEIHFSRLSKLKFLGLSSN 486
           L  L +++N L  I +   F +L+ L+ L LS+N
Sbjct: 133 LKELRLNTNQLQSIPAGA-FDKLTNLQTLSLSTN 165

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251

 Score = 47.8 bits (114), Expect = 7e-06
 Identities = 61/260 (23%), Positives = 83/260 (31%), Gaps = 86/260 (33%)

Query: 661 SIGNCT---FLKVLDLSYSSLSGV---IPASLGQLTRLQSLHLNNNKLTGNLPSSFQNLT 714
           ++  CT     K +D    SL  V   IPA        + L L +  L     ++F+ LT
Sbjct: 6   TVTGCTCNEGKKEVDCQGKSLDSVPSGIPADT------EKLDLQSTGLATLSDATFRGLT 59

Query: 715 SLETLDLGNNRFSGNIPSLLGNGFVGLRILSLRSNAFSGEIPSKLSNLSSLQVLDLAENN 774
            L  L+L  N+                   +L +  F          L+ L  L LA N 
Sbjct: 60  KLTWLNLDYNQLQ-----------------TLSAGVFDD--------LTELGTLGLANNQ 94

Query: 775 LTGSIPGSVGDLKAMAHVQNIVKYLLFGRYRGIYYEENLVINTKGSSKDTPRLFHFIDLS 834
           L  S+P  V D     H+  +   L                                 L 
Sbjct: 95  LA-SLPLGVFD-----HLTQL-DKL--------------------------------YLG 115

Query: 835 GNNL----HGDFPTQLTKLVGLVVLNLSRNHIGGQIPENI-SGLHQLASLDLSSNNLSGG 889
           GN L     G F     +L  L  L L+ N +   IP      L  L +L LS+N L   
Sbjct: 116 GNQLKSLPSGVF----DRLTKLKELRLNTNQLQ-SIPAGAFDKLTNLQTLSLSTNQLQSV 170

Query: 890 IPSSLSSLSFLGYINLSRNQ 909
              +   L  L  I L  NQ
Sbjct: 171 PHGAFDRLGKLQTITLFGNQ 190

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251

 Score = 44.7 bits (106), Expect = 7e-05
 Identities = 46/166 (27%), Positives = 68/166 (40%), Gaps = 18/166 (10%)

Query: 300 QILNFASNKLHGKLPSSVANMTSLTNFDLFDKKVEGGIPSSI-ARLCYLKEFDLSGNNLT 358
           + L+  S  L     ++   +T LT  +L   +++  + + +   L  L    L+ N L 
Sbjct: 38  EKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQT-LSAGVFDDLTELGTLGLANNQLA 96

Query: 359 GSLPE-ILQGTDLCVSSNSPLPSLISMRLGNNHLKGKLPEWL-SQLENLVELTLSYNLLQ 416
            SLP  +             L  L  + LG N LK  LP  +  +L  L EL L+ N LQ
Sbjct: 97  -SLPLGVFDH----------LTQLDKLYLGGNQLK-SLPSGVFDRLTKLKELRLNTNQLQ 144

Query: 417 GPIPASL-GNLKNLTKLNLPGNQLNGTLPETLGSLPELSVLDVSSN 461
             IPA     L NL  L+L  NQL          L +L  + +  N
Sbjct: 145 S-IPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGN 189

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251

 Score = 43.9 bits (104), Expect = 1e-04
 Identities = 50/173 (28%), Positives = 71/173 (41%), Gaps = 24/173 (13%)

Query: 274 QYLSLAGNNNLSGSCSQLFRGSWKKIQILNFASNKLHGKLPSSV-ANMTSLTNFDLFD-- 330
           + L L  +  L+      FRG   K+  LN   N+L   L + V  ++T L    L +  
Sbjct: 38  EKLDL-QSTGLATLSDATFRGL-TKLTWLNLDYNQL-QTLSAGVFDDLTELGTLGLANNQ 94

Query: 331 -KKVEGGIPSSIARLCYLKEFDLSGNNLTGSLPEILQGT-DLCVSSNSPLPSLISMRLGN 388
              +  G+   + +L  L    L GN L  SLP    G  D        L  L  +RL  
Sbjct: 95  LASLPLGVFDHLTQLDKL---YLGGNQLK-SLPS---GVFD-------RLTKLKELRLNT 140

Query: 389 NHLKGKLPEWL-SQLENLVELTLSYNLLQGPIPASLGNLKNLTKLNLPGNQLN 440
           N L+  +P     +L NL  L+LS N LQ     +   L  L  + L GNQ +
Sbjct: 141 NQLQ-SIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQFD 192

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 67.0 bits (164), Expect = 9e-12
 Identities = 39/224 (17%), Positives = 75/224 (33%), Gaps = 42/224 (18%)

Query: 595 IELLDLSNNHFSGPIPQNISG---SMPNLIFLSVSGNRLTGKIPGSIGEM----QLLQVI 647
           IE   L  +  +    +++        ++  + +SGN +  +    + E     + L++ 
Sbjct: 6   IEGKSLKLDAITTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIA 65

Query: 648 DLSRNSIS----------GSISSSIGNCTFLKVLDLSYSSLS--GVIP--ASLGQLTRLQ 693
           + S                 +  ++  C  L  + LS ++       P    L + T L+
Sbjct: 66  EFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLE 125

Query: 694 SLHLNNNKLT-------------GNLPSSFQNLTSLETLDLGNNRFSGNIPSLLGNGFV- 739
            L+L+NN L                +    +N   L ++  G NR            F  
Sbjct: 126 HLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQS 185

Query: 740 --GLRILSLRSNAFSGE-----IPSKLSNLSSLQVLDLAENNLT 776
              L  + +  N    E     +   L+    L+VLDL +N  T
Sbjct: 186 HRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFT 229

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 65.1 bits (159), Expect = 3e-11
 Identities = 42/224 (18%), Positives = 76/224 (33%), Gaps = 42/224 (18%)

Query: 595 IELLDLSNNHFSGPIPQNIS---GSMPNLIFLSVSGN---RLTGKIP---GSIGEM---- 641
           ++ + LS N       + +S    S  +L     S     R+  +IP     + +     
Sbjct: 34  VKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKC 93

Query: 642 QLLQVIDLSRNSISG----SISSSIGNCTFLKVLDLSYSSLS-------------GVIPA 684
             L  + LS N+        +   +   T L+ L L  + L                +  
Sbjct: 94  PKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNK 153

Query: 685 SLGQLTRLQSLHLNNNKLTGN----LPSSFQNLTSLETLDLGNNRFSGN-IPSLLGNGFV 739
                  L+S+    N+L          +FQ+   L T+ +  N      I  LL  G  
Sbjct: 154 KAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLA 213

Query: 740 G---LRILSLRSNAFSGE----IPSKLSNLSSLQVLDLAENNLT 776
               L++L L+ N F+      +   L +  +L+ L L +  L+
Sbjct: 214 YCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLS 257

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 64.7 bits (158), Expect = 5e-11
 Identities = 34/221 (15%), Positives = 68/221 (30%), Gaps = 39/221 (17%)

Query: 595 IELLDLSNNHFSGPIPQNIS---GSMPNLIFLSVSGNRLT-------------GKIPGSI 638
           +  + LS+N F     + +         L  L +  N L                +    
Sbjct: 96  LHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKA 155

Query: 639 GEMQLLQVIDLSRNSISG----SISSSIGNCTFLKVLDLSYSSL-----SGVIPASLGQL 689
                L+ I   RN +        + +  +   L  + +  + +       ++   L   
Sbjct: 156 KNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYC 215

Query: 690 TRLQSLHLNNNKLTGN----LPSSFQNLTSLETLDLGNNRFSGN-----IPSLLGNGFVG 740
             L+ L L +N  T      L  + ++  +L  L L +   S       + +      +G
Sbjct: 216 QELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIG 275

Query: 741 LRILSLRSNAFSGEIPSKL-----SNLSSLQVLDLAENNLT 776
           L+ L L+ N    +    L       +  L  L+L  N  +
Sbjct: 276 LQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFS 316

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 64.3 bits (157), Expect = 6e-11
 Identities = 48/343 (13%), Positives = 98/343 (28%), Gaps = 89/343 (25%)

Query: 623 LSVSGNRLTGK----IPGSIGEMQLLQVIDLSRNSISG----SISSSIGNCTFLKVLDLS 674
            S+  + +T +    +   + E   ++ I LS N+I       +S +I +   L++ + S
Sbjct: 9   KSLKLDAITTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFS 68

Query: 675 YSSLS----------GVIPASLGQLTRLQSLHLNNNKLTGN----LPSSFQNLTSLETLD 720
                           ++  +L +  +L ++ L++N         L       T LE L 
Sbjct: 69  DIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLY 128

Query: 721 LGNNRFS------------GNIPSLLGNGFVGLRILSLRSNAFSGE----IPSKLSNLSS 764
           L NN                   +        LR +    N               +   
Sbjct: 129 LHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRL 188

Query: 765 LQVLDLAENNLTGSIPGSVGDLKAMAHVQNIVKYLLFGRYRGIYYEENLVINTKGSSKDT 824
           L  + + +N +        G    +                       L    +      
Sbjct: 189 LHTVKMVQNGI-----RPEGIEHLLLEG--------------------LAYCQE------ 217

Query: 825 PRLFHFIDLSGNNLHGDFPTQ-----LTKLVGLVVLNLSRNHIGGQ----IPENISGLH- 874
                 +DL  N       +      L     L  L L+   +  +    + +  S L  
Sbjct: 218 ---LKVLDLQDNTF-THLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLEN 273

Query: 875 -QLASLDLSSNNLSG----GIPSSL-SSLSFLGYINLSRNQLS 911
             L +L L  N +       + + +   +  L ++ L+ N+ S
Sbjct: 274 IGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFS 316

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 62.4 bits (152), Expect = 3e-10
 Identities = 54/358 (15%), Positives = 113/358 (31%), Gaps = 82/358 (22%)

Query: 405 LVELTLSYNLLQG----PIPASLGNLKNLTKLNLPGNQLNGT----LPETLGSLPELSVL 456
           +   +L  + +       + A L    ++ ++ L GN +       L E + S  +L + 
Sbjct: 6   IEGKSLKLDAITTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIA 65

Query: 457 DVSSNSLTGIISEIHFSRLSKLKFLGLSSNSFILNVSSSWIPPFQVQSLNMRSCQLGP-- 514
           + S      +  EI  +    L+   L                 ++ ++ +     GP  
Sbjct: 66  EFSDIFTGRVKDEIPEALRLLLQ--ALLKCP-------------KLHTVRLSDNAFGPTA 110

Query: 515 --SFPSWLKTQQGVSFLDFSNASISGPIPNWFWDISSKLSLLNVSLNQLQGQLPNPLNIA 572
                 +L     +  L   N  +    P     I+  L  L V+               
Sbjct: 111 QEPLIDFLSKHTPLEHLYLHNNGLG---PQAGAKIARALQELAVNKKAKNAP-------- 159

Query: 573 PFADVDFRSNLLEGPIPLPIVEIELLDLSNNHFSGPIPQNIS---GSMPNLIFLSVSGNR 629
                                 +  +    N       +  +    S   L  + +  N 
Sbjct: 160 ---------------------PLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNG 198

Query: 630 LTGK-----IPGSIGEMQLLQVIDLSRNSISG----SISSSIGNCTFLKVLDLSYSSLSG 680
           +  +     +   +   Q L+V+DL  N+ +     +++ ++ +   L+ L L+   LS 
Sbjct: 199 IRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSA 258

Query: 681 V----IPASLGQL--TRLQSLHLNNNKLTGN----LPSSFQ-NLTSLETLDLGNNRFS 727
                +  +  +L    LQ+L L  N++  +    L +     +  L  L+L  NRFS
Sbjct: 259 RGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFS 316

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 55.9 bits (135), Expect = 4e-08
 Identities = 50/349 (14%), Positives = 107/349 (30%), Gaps = 69/349 (19%)

Query: 172 SLKHLAMNRVDLSLVGSEWLG-ILKNLPNLTELHLSVCGLT-GSITSITPV--NLTSPAV 227
           S++  ++    ++    + +  +L    ++ E+ LS   +   +   ++    +     +
Sbjct: 5   SIEGKSLKLDAITTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEI 64

Query: 228 LDLSLNHFNSLFPNW----------LVNISTLVYVDLSDCDLYGRIPIGFGEL----PNL 273
            + S      +              L+    L  V LSD            +       L
Sbjct: 65  AEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPL 124

Query: 274 QYLSLAGNN-----------NLSGSCSQLFRGSWKKIQILNFASNKLHGK----LPSSVA 318
           ++L L  N             L          +   ++ +    N+L          +  
Sbjct: 125 EHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQ 184

Query: 319 NMTSLTNFDLF-----DKKVEGGIPSSIARLCYLKEFDLSGNNLTG----SLPEILQGTD 369
           +   L    +       + +E  +   +A    LK  DL  N  T     +L   L+   
Sbjct: 185 SHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKS-- 242

Query: 370 LCVSSNSPLPSLISMRLGNNHLKGK----LPEWLSQLEN--LVELTLSYNLLQGPIPASL 423
                    P+L  + L +  L  +    + +  S+LEN  L  L L YN ++     +L
Sbjct: 243 --------WPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTL 294

Query: 424 G-----NLKNLTKLNLPGNQLN------GTLPETLGSLPELSVLDVSSN 461
                  + +L  L L GN+ +        + E   +     + ++   
Sbjct: 295 KTVIDEKMPDLLFLELNGNRFSEEDDVVDEIREVFSTRGRGELDELDDM 343

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 50.1 bits (120), Expect = 2e-06
 Identities = 46/299 (15%), Positives = 82/299 (27%), Gaps = 54/299 (18%)

Query: 98  LEYLDLSFNTFND---IPIPEFLGSLENLQYLNLSEAGFTGVVPSSLGNLHRLQYFDVSA 154
           ++ + LS NT        + E + S ++L+    S+     V       L  L       
Sbjct: 34  VKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLL------- 86

Query: 155 ELFALSADSLDWLTGLVSLKHLAMNRVDLSLVGSEWLG-ILKNLPNLTELHLSVCG---- 209
                   +L     L ++  L+ N         E L   L     L  L+L   G    
Sbjct: 87  ------LQALLKCPKLHTV-RLSDNA--FGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQ 137

Query: 210 --------LTGSITSITPVNLTSPAVLDLSLNHFN----SLFPNWLVNISTLVYVDLSDC 257
                   L     +    N      +    N         +     +   L  V +   
Sbjct: 138 AGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQN 197

Query: 258 DLYGR-----IPIGFGELPNLQYLSLAGNNNLSGSCSQLFRG--SWKKIQILNFASNKLH 310
            +        +  G      L+ L L  N       S L     SW  ++ L      L 
Sbjct: 198 GIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLS 257

Query: 311 GKLPSSVANM------TSLTNFDLFDKKVEGGIPSSIAR-----LCYLKEFDLSGNNLT 358
            +  ++V +         L    L   ++E     ++       +  L   +L+GN  +
Sbjct: 258 ARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFS 316

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 50.1 bits (120), Expect = 2e-06
 Identities = 43/241 (17%), Positives = 76/241 (31%), Gaps = 45/241 (18%)

Query: 313 LPSSVANMTSLTNFDLFDKK--VEGG--IPSSIARLCYLKEFDLSGNNLTGSLPEILQGT 368
           + + +    S+    L       E    +  +IA    L+  + S         EI +  
Sbjct: 24  VFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEAL 83

Query: 369 DLCVSSNSPLPSLISMRLGNNHLKGK----LPEWLSQLENLVELTLSYN----------- 413
            L + +    P L ++RL +N         L ++LS+   L  L L  N           
Sbjct: 84  RLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIA 143

Query: 414 --LLQGPIPASLGNLKNLTKLNLPGNQLNG----TLPETLGSLPELSVLDVSSNSLT--G 465
             L +  +     N   L  +    N+L         +T  S   L  + +  N +   G
Sbjct: 144 RALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEG 203

Query: 466 IISEIH--FSRLSKLKFLGLSSNSF----------ILNVSSSWIPPFQVQSLNMRSCQLG 513
           I   +    +   +LK L L  N+F           L    +      ++ L +  C L 
Sbjct: 204 IEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPN------LRELGLNDCLLS 257

Query: 514 P 514
            
Sbjct: 258 A 258

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 47.8 bits (114), Expect = 1e-05
 Identities = 33/280 (11%), Positives = 75/280 (26%), Gaps = 81/280 (28%)

Query: 662 IGNCTFLKVLDLSYSSLSGV----IPASLGQLTRLQSLHLNNNKLTGN----LPSSFQNL 713
           +   + ++   L   +++      + A L +   ++ + L+ N +       L  +  + 
Sbjct: 1   MARFS-IEGKSLKLDAITTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASK 59

Query: 714 TSLETLDLGNNRFSGNIPSLLGNGFVGLRILSLRSNAFSGEIPSKLSNLSSLQVLDLAEN 773
             LE  +  +  F+G +          LR+L              L     L  + L++N
Sbjct: 60  KDLEIAEFSDI-FTGRVKDE---IPEALRLLL-----------QALLKCPKLHTVRLSDN 104

Query: 774 NLTGSIPGSVGDLKAMAHVQNIVKYLLFGRYRGIYYEENLVINTKGSSKDTPRLFHFIDL 833
                  G           + ++ +L                           L H + L
Sbjct: 105 AF-----GPTA-------QEPLIDFL----------------------SKHTPLEH-LYL 129

Query: 834 SGNNL-------------HGDFPTQLTKLVGLVVLNLSRNHIGGQ----IPENISGLHQL 876
             N L                   +      L  +   RN +         +       L
Sbjct: 130 HNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLL 189

Query: 877 ASLDLSSNNL-----SGGIPSSLSSLSFLGYINLSRNQLS 911
            ++ +  N +        +   L+    L  ++L  N  +
Sbjct: 190 HTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFT 229

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 65.1 bits (158), Expect = 3e-11
 Identities = 30/117 (25%), Positives = 46/117 (39%), Gaps = 3/117 (2%)

Query: 396 PEWLSQLENLVELTLSYNLLQGPIPA-SLGNLKNLTKLNLPGNQLNGTLPETLGSLPELS 454
              L   ENL EL +        +    L  L  L  L +  + L    P+     P LS
Sbjct: 24  LHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLS 83

Query: 455 VLDVSSNSLTGIISEIHFSRLSKLKFLGLSSNSFILNVSSSWIPPFQVQSLNMRSCQ 511
            L++S N+L   +S      LS L+ L LS N    + +  W+  ++ + L     Q
Sbjct: 84  RLNLSFNALE-SLSWKTVQGLS-LQELVLSGNPLHCSCALRWLQRWEEEGLGGVPEQ 138

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 64.4 bits (156), Expect = 5e-11
 Identities = 21/96 (21%), Positives = 33/96 (34%), Gaps = 3/96 (3%)

Query: 682 IPASLGQLTRLQSLHLNNNKLTGNLPS-SFQNLTSLETLDLGNNRFSGNIPSLLGNGFVG 740
               L     L  L++ N +   +L     + L  L  L +  +     +     +    
Sbjct: 23  SLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLR-FVAPDAFHFTPR 81

Query: 741 LRILSLRSNAFSGEIPSKLSNLSSLQVLDLAENNLT 776
           L  L+L  NA    +  K     SLQ L L+ N L 
Sbjct: 82  LSRLNLSFNALE-SLSWKTVQGLSLQELVLSGNPLH 116

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 59.8 bits (144), Expect = 1e-09
 Identities = 20/100 (20%), Positives = 33/100 (33%), Gaps = 2/100 (2%)

Query: 628 NRLTGKIPGSIGEMQLLQVIDLSRNSISGSI-SSSIGNCTFLKVLDLSYSSLSGVIPASL 686
                     +   + L  + +        +    +     L+ L +  S L  V P + 
Sbjct: 17  RDGALDSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAF 76

Query: 687 GQLTRLQSLHLNNNKLTGNLPSSFQNLTSLETLDLGNNRF 726
               RL  L+L+ N L      + Q L SL+ L L  N  
Sbjct: 77  HFTPRLSRLNLSFNALESLSWKTVQGL-SLQELVLSGNPL 115

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 55.9 bits (134), Expect = 3e-08
 Identities = 20/87 (22%), Positives = 30/87 (34%), Gaps = 7/87 (8%)

Query: 668 LKVLDLSYSSLSGVIPA-SLGQLTRLQSLHLNNNKLTGNLPSSFQNLTSLETLDLGNNRF 726
           L  L +        +    L  L  L++L +  + L    P +F     L  L+L  N  
Sbjct: 33  LTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNA- 91

Query: 727 SGNIPSLLGNGFVG--LRILSLRSNAF 751
              + SL      G  L+ L L  N  
Sbjct: 92  ---LESLSWKTVQGLSLQELVLSGNPL 115

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 54.4 bits (130), Expect = 1e-07
 Identities = 23/95 (24%), Positives = 36/95 (37%), Gaps = 8/95 (8%)

Query: 419 IPASLGNLKNLTKLNLPGNQLNGTLP-ETLGSLPELSVLDVSSNSLTGIISEIHFSRLSK 477
               L   +NLT+L +   Q    L    L  L EL  L +  + L  +  +  F    +
Sbjct: 23  SLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDA-FHFTPR 81

Query: 478 LKFLGLSSNSFILNVSSSWIPPFQVQSLNMRSCQL 512
           L  L LS N+         +    VQ L+++   L
Sbjct: 82  LSRLNLSFNAL------ESLSWKTVQGLSLQELVL 110

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 52.0 bits (124), Expect = 5e-07
 Identities = 13/86 (15%), Positives = 26/86 (30%), Gaps = 3/86 (3%)

Query: 699 NNKLTGNLPSSFQNLTSLETLDLGNNRFSGNIPSLLGNGFVGLRILSLRSNAFSGEIPSK 758
                 +         +L  L + N +   ++      G   LR L++  +     +   
Sbjct: 16  TRDGALDSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLR-FVAPD 74

Query: 759 -LSNLSSLQVLDLAENNLTGSIPGSV 783
                  L  L+L+ N L  S+    
Sbjct: 75  AFHFTPRLSRLNLSFNALE-SLSWKT 99

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 50.5 bits (120), Expect = 1e-06
 Identities = 22/89 (24%), Positives = 34/89 (38%), Gaps = 2/89 (2%)

Query: 377 PLPSLISMRL-GNNHLKGKLPEWLSQLENLVELTLSYNLLQGPIPASLGNLKNLTKLNLP 435
              +L  + +    HL+      L  L  L  LT+  + L+   P +      L++LNL 
Sbjct: 29  GAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLS 88

Query: 436 GNQLNGTLPETLGSLPELSVLDVSSNSLT 464
            N L  +L         L  L +S N L 
Sbjct: 89  FNALE-SLSWKTVQGLSLQELVLSGNPLH 116

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 45.9 bits (108), Expect = 5e-05
 Identities = 17/82 (20%), Positives = 32/82 (39%), Gaps = 4/82 (4%)

Query: 831 IDLSGNNLHGDFPTQ-LTKLVGLVVLNLSRNHIGGQIPENI-SGLHQLASLDLSSNNLSG 888
           + +           + L  L  L  L + ++ +   +  +      +L+ L+LS N L  
Sbjct: 36  LYIENQQHLQHLELRDLRGLGELRNLTIVKSGLR-FVAPDAFHFTPRLSRLNLSFNALES 94

Query: 889 GIPSSLSSLSFLGYINLSRNQL 910
               ++  LS L  + LS N L
Sbjct: 95  LSWKTVQGLS-LQELVLSGNPL 115

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 45.5 bits (107), Expect = 6e-05
 Identities = 22/106 (20%), Positives = 36/106 (33%), Gaps = 11/106 (10%)

Query: 836 NNLHGDFPTQLTKLVGLVVLNLSRNHIGGQIPEN-ISGLHQLASLDLSSNNLSGGIPSSL 894
            +   D    L     L  L +        +    + GL +L +L +  + L    P + 
Sbjct: 17  RDGALDSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAF 76

Query: 895 SSLSFLGYINLSRNQLSGKIPFEGHMTTFDASS-----FAGNPGLC 935
                L  +NLS N L   + ++    T    S      +GNP  C
Sbjct: 77  HFTPRLSRLNLSFNALE-SLSWK----TVQGLSLQELVLSGNPLHC 117

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Length = 592

 Score = 65.3 bits (159), Expect = 6e-11
 Identities = 62/448 (13%), Positives = 139/448 (31%), Gaps = 36/448 (8%)

Query: 93  SSGSLLEYLDLSFNTFNDIPIPEFLGS-LENLQYLNLSE-AGFTGVVPSSLG-NLHRLQY 149
           ++   L+ +       +D+ +     +  ++L+ L L + +GFT     S+  +  +++ 
Sbjct: 109 NNLRQLKSVHFRRMIVSDLDLDRLAKARADDLETLKLDKCSGFTTDGLLSIVTHCRKIKT 168

Query: 150 FDVSAELFALSADSLDWL----TGLVSLKHLAMNRVDLSLVGSEWL-GILKNLPNLTELH 204
             +     + S     WL        SL+ L     + + +  + L  I +N  +L  + 
Sbjct: 169 LLMEES--SFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVK 226

Query: 205 LSVCGLTGSITSITPV-NLTSPAVLDLSLNHFNSLFPNWLVNISTLVYVDLSDCDLYGRI 263
           +    +   +       NL       L+ +         LV    L  + LS       +
Sbjct: 227 VGDFEILELVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGPNE-M 285

Query: 264 PIGFGELPNLQYLSLAGNNNLSGSCSQLFRGSWKKIQILNFASNKLHGKLPSSVANMTSL 323
           PI F     ++ L L      +     L +     +++L   +      L         L
Sbjct: 286 PILFPFAAQIRKLDLLYALLETEDHCTLIQKC-PNLEVLETRNVIGDRGLEVLAQYCKQL 344

Query: 324 TNFDLFDKKVEGGIPS-----------SIARLC-YLKEFDLSGNNLT-GSLPEILQG--- 367
               +     E G+             ++A+ C  L+   +  +++T  SL  I      
Sbjct: 345 KRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSDITNESLESIGTYLKN 404

Query: 368 -TDLCVSSNSPLPSLISMRLGNNHLKGKLPEWLSQLENLVELTLSYNLLQGPIPASLGNL 426
             D  +        +  + L  ++    L     +L           L    +       
Sbjct: 405 LCDFRLVLLDREERITDLPL--DNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYS 462

Query: 427 KNLTKLNLPGNQLNGT-LPETLGSLPELSVLDVSSNSLTGIISEIHFSRLSKLKFLGLSS 485
            N+  + L     +   L E     P L  L++     +        ++L  L++L +  
Sbjct: 463 PNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCFSERAIAAAVTKLPSLRYLWVQG 522

Query: 486 NSFILN---VSSSWIPPFQVQSLNMRSC 510
               +    +     P + ++ +  R  
Sbjct: 523 YRASMTGQDLMQMARPYWNIELIPSRRV 550

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Length = 592

 Score = 63.4 bits (154), Expect = 2e-10
 Identities = 65/552 (11%), Positives = 152/552 (27%), Gaps = 91/552 (16%)

Query: 193 ILKNLPNLTELHLSVCGLTGSITSITPVNLTSPAVLDLSLNHFNSLFPNWLVNISTLVYV 252
           + +  PNL  L L              +       +   +   ++           L  V
Sbjct: 68  LSRRFPNLRSLKLKGK---PRAAMFNLIPENWGGYVTPWVTEISNNLRQ-------LKSV 117

Query: 253 DLSDCDL--YGRIPIGFGELPNLQYLSLAGNNNLSGSCSQLFRGSWKKIQILNFASNKLH 310
                 +       +      +L+ L L   +  +           +KI+ L    +   
Sbjct: 118 HFRRMIVSDLDLDRLAKARADDLETLKLDKCSGFTTDGLLSIVTHCRKIKTLLMEESSFS 177

Query: 311 GKLPSSVANMTSLTNFDLFDKKVEGGIPSSIARLCYLKEFDLSGNNLT-GSLPEILQGTD 369
            K    +                   +      L  L  +      ++   L  I +   
Sbjct: 178 EKDGKWLHE-----------------LAQHNTSLEVLNFYMTEFAKISPKDLETIARN-- 218

Query: 370 LCVSSNSPLPSLISMRLGNNHL--KGKLPEWLSQLENLVELTLSYNLLQGPIPASLGNLK 427
                     SL+S+++G+  +       +  + LE     +L+ ++       +L   +
Sbjct: 219 --------CRSLVSVKVGDFEILELVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPR 270

Query: 428 NLTKLNLPGNQLNGTLPETLGSLPELSVLDVSSNSLTGIISEIHFSRLSKLKFLGLS--- 484
            L +L L     N  +P       ++  LD+    L          +   L+ L      
Sbjct: 271 KLCRLGLSYMGPNE-MPILFPFAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETRNVI 329

Query: 485 SNSFILNVSSSWIPPFQVQSLNMRSCQLGPSFPSWLKTQQGVSFLDFSNASISGPIPNWF 544
            +  +  ++       Q++ L +               +  VS       +++       
Sbjct: 330 GDRGLEVLAQYCK---QLKRLRIERG---ADEQGMEDEEGLVS--QRGLIALAQGCQE-- 379

Query: 545 WDISSKLSLLNVSLNQLQGQLPNPLNIAPFADVDFRSNLLEGPIPLPIVEIELLDLSNNH 604
                 L  + V ++ +        N +  +   +  NL          +  L+ L    
Sbjct: 380 ------LEYMAVYVSDIT-------NESLESIGTYLKNL---------CDFRLVLLDREE 417

Query: 605 FSGPIP-----QNISGSMPNLIFLSVSGN--RLTGKIPGSIGEM-QLLQVIDLSRNSIS- 655
               +P     +++      L   +       LT      IG+    ++ + L     S 
Sbjct: 418 RITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGESD 477

Query: 656 GSISSSIGNCTFLKVLDLSYSSLSGV-IPASLGQLTRLQSLHLNNNKLTGNLPSSF---Q 711
             +      C  L+ L++     S   I A++ +L  L+ L +   + +          +
Sbjct: 478 EGLMEFSRGCPNLQKLEMRGCCFSERAIAAAVTKLPSLRYLWVQGYRASMTGQDLMQMAR 537

Query: 712 NLTSLETLDLGN 723
              ++E +    
Sbjct: 538 PYWNIELIPSRR 549

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Length = 592

 Score = 48.4 bits (115), Expect = 1e-05
 Identities = 45/360 (12%), Positives = 106/360 (29%), Gaps = 49/360 (13%)

Query: 167 LTGLVSLKHLAMNRVDLSLVGSEWLG-ILKNLPNLTELHLSVCGLT----GSITSITPVN 221
           L G        +   +     + W+  I  NL  L  +H     ++      +      +
Sbjct: 80  LKGKPRAAMFNLIPENWGGYVTPWVTEISNNLRQLKSVHFRRMIVSDLDLDRLAKARADD 139

Query: 222 LTSPAVLDLSLNHFNSLFPNWLVNIST----LVYVDLSDCDLYGRIPIGFGEL----PNL 273
           L +     L L+  +    + L++I T    +  + + +     +      EL     +L
Sbjct: 140 LET-----LKLDKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQHNTSL 194

Query: 274 QYLSLA--GNNNLSGSCSQLFRGSWKKIQILNFASNKLHGKLPSSVANMTSLTNFDLFDK 331
           + L+        +S    +    + + +  +    +    +L        +L  F     
Sbjct: 195 EVLNFYMTEFAKISPKDLETIARNCRSLVSVKV-GDFEILELVGFFKAAANLEEFCGGSL 253

Query: 332 KVEGGIPSSIARLCYLKEFDLSGNNLTG--SLPEILQGTDLCVSSNSPLPSLISMRLGNN 389
             + G+P     L + ++    G +  G   +P +                +  + L   
Sbjct: 254 NEDIGMPEKYMNLVFPRKLCRLGLSYMGPNEMPILFPF----------AAQIRKLDLLYA 303

Query: 390 HLKG-KLPEWLSQLENLVELTLSYNLLQGPIPASLGNLKNLTKLNLPGNQLNGTLPETLG 448
            L+       + +  NL  L     +    +       K L +L +        + +  G
Sbjct: 304 LLETEDHCTLIQKCPNLEVLETRNVIGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEG 363

Query: 449 SL------------PELSVLDVSSNSLTGI-ISEI--HFSRLSKLKFLGLSSNSFILNVS 493
            +             EL  + V  + +T   +  I  +   L   + + L     I ++ 
Sbjct: 364 LVSQRGLIALAQGCQELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLP 423

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Length = 592

 Score = 47.6 bits (113), Expect = 2e-05
 Identities = 62/495 (12%), Positives = 149/495 (30%), Gaps = 61/495 (12%)

Query: 339 SSIARLC-YLKEFDLSGNNLTGSLPEILQGTDLCVSSNSPLPSLISMRLGN-NHLKGK-L 395
           + I+     LK        ++          DL   + +    L +++L   +      L
Sbjct: 105 TEISNNLRQLKSVHFRRMIVSDL--------DLDRLAKARADDLETLKLDKCSGFTTDGL 156

Query: 396 PEWLSQLENLVELTLSYNLLQGPIPASLG----NLKNLTKLNLPGNQLNGTLPETLGSL- 450
              ++    +  L +  +         L     +  +L  LN    +     P+ L ++ 
Sbjct: 157 LSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIA 216

Query: 451 ---PELSVLDVSSNSLTGIISEIHFSRLSKLKFLGLSSNSFILNVSSSWIPPFQVQSLNM 507
                L  + V    +  ++    F   + L+     S +  + +   ++     + L  
Sbjct: 217 RNCRSLVSVKVGDFEILELVG--FFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCR 274

Query: 508 RSCQL--GPSFPSWLKTQQGVSFLDFSNASISGPIPNWFWDISSKLSLLNVSLNQLQGQL 565
                      P        +  LD   A +     +    I    +L  +    + G  
Sbjct: 275 LGLSYMGPNEMPILFPFAAQIRKLDLLYALLETE--DHCTLIQKCPNLEVLETRNVIG-- 330

Query: 566 PNPLNIAPFADVDFRSNL----LEGPIPLPIVEIELLDLSNNHFSGPIPQNISGSMPNLI 621
               +        +   L    +E       +E E   +S           ++     L 
Sbjct: 331 ----DRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGL-----IALAQGCQELE 381

Query: 622 FLSVSGNRLTGKIPGSIGE----MQLLQVIDLSRNS------ISGSISSSIGNCTFLKVL 671
           +++V  + +T +   SIG     +   +++ L R        +   + S +  C  L+  
Sbjct: 382 YMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRF 441

Query: 672 DLSYSS--LSGVIPASLGQL-TRLQSLHLNNNKLTGN-LPSSFQNLTSLETLDLGNNRFS 727
                   L+ +  + +GQ    ++ + L     +   L    +   +L+ L++    FS
Sbjct: 442 AFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCFS 501

Query: 728 GNIPSLLGNGFVGLRILSLRSNAFSGEIPSKLS---NLSSLQVLDLAENNLTGSIPGSVG 784
               +        LR L ++    S      +       +++++               G
Sbjct: 502 ERAIAAAVTKLPSLRYLWVQGYRASMTGQDLMQMARPYWNIELIPSRRVPEV----NQQG 557

Query: 785 DLKAMAHVQNIVKYL 799
           +++ M H  +I+ Y 
Sbjct: 558 EIREMEHPAHILAYY 572

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Length = 592

 Score = 44.2 bits (104), Expect = 2e-04
 Identities = 32/189 (16%), Positives = 65/189 (34%), Gaps = 13/189 (6%)

Query: 595 IELLDLSNNHFSGPIPQNISGSMPNLIFLSVSGNRLTGKIPGSIGEMQL--LQVIDLSRN 652
             L+  +   +  P    IS ++  L  +      ++      + + +   L+ + L + 
Sbjct: 89  FNLIPENWGGYVTPWVTEISNNLRQLKSVHFRRMIVSDLDLDRLAKARADDLETLKLDKC 148

Query: 653 SI--SGSISSSIGNCTFLKVLDLSYSSLSGVIPASLGQL----TRLQSLHLNNNKLTG-- 704
           S   +  + S + +C  +K L +  SS S      L +L    T L+ L+    +     
Sbjct: 149 SGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKIS 208

Query: 705 --NLPSSFQNLTSLETLDLGNNRFSGNIPSL-LGNGFVGLRILSLRSNAFSGEIPSKLSN 761
             +L +  +N  SL ++ +G+      +               SL  +    E    L  
Sbjct: 209 PKDLETIARNCRSLVSVKVGDFEILELVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVF 268

Query: 762 LSSLQVLDL 770
              L  L L
Sbjct: 269 PRKLCRLGL 277

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 60.9 bits (148), Expect = 7e-11
 Identities = 31/129 (24%), Positives = 52/129 (40%), Gaps = 10/129 (7%)

Query: 646 VIDLSRNSISGSISSSIGNCTFLKVLDLSYSSLSGVIPASLGQLTRLQSLHLNNNKLTGN 705
           V+D  +++  G I         L+ L L    L  V  ++L +L +L+ L L+ N++ G 
Sbjct: 30  VLDNCKSND-GKIEGLTAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGG 86

Query: 706 LPSSFQNLTSLETLDLGNNRFS--GNIPSLLGNGFVGLRILSLRSNAFSGEI---PSKLS 760
           L    + L +L  L+L  N+      +  L       L+ L L +   +       S   
Sbjct: 87  LDMLAEKLPNLTHLNLSGNKLKDISTLEPL--KKLECLKSLDLFNCEVTNLNDYRESVFK 144

Query: 761 NLSSLQVLD 769
            L  L  LD
Sbjct: 145 LLPQLTYLD 153

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 60.5 bits (147), Expect = 9e-11
 Identities = 35/133 (26%), Positives = 55/133 (41%), Gaps = 10/133 (7%)

Query: 594 EIELLDLSNNHFSGPIPQNISGSMPNLIFLSVSGNRLTGKIPGSIGEMQLLQVIDLSRNS 653
            +  L L N   +    + ++    NL FLS+    L   +   + ++  L+ ++LS N 
Sbjct: 25  AVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLI-SVSN-LPKLPKLKKLELSENR 82

Query: 654 ISGSISSSIGNCTFLKVLDLSY---SSLSGVIPASLGQLTRLQSLHLNNN---KLTGNLP 707
           I G +         L  L+LS      +S + P  L +L  L+SL L N     L     
Sbjct: 83  IFGGLDMLAEKLPNLTHLNLSGNKLKDISTLEP--LKKLECLKSLDLFNCEVTNLNDYRE 140

Query: 708 SSFQNLTSLETLD 720
           S F+ L  L  LD
Sbjct: 141 SVFKLLPQLTYLD 153

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 54.0 bits (130), Expect = 2e-08
 Identities = 31/102 (30%), Positives = 45/102 (44%), Gaps = 3/102 (2%)

Query: 386 LGNNHLK-GKLPEWLSQLENLVELTLSYNLLQGPIPASLGNLKNLTKLNLPGNQLNGTLP 444
           L N     GK+    ++  NL  L+L    L     ++L  L  L KL L  N++ G L 
Sbjct: 31  LDNCKSNDGKIEGLTAEFVNLEFLSLINVGLI--SVSNLPKLPKLKKLELSENRIFGGLD 88

Query: 445 ETLGSLPELSVLDVSSNSLTGIISEIHFSRLSKLKFLGLSSN 486
                LP L+ L++S N L  I +     +L  LK L L + 
Sbjct: 89  MLAEKLPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNC 130

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 48.6 bits (116), Expect = 1e-06
 Identities = 34/125 (27%), Positives = 44/125 (35%), Gaps = 16/125 (12%)

Query: 337 IPSSIARLCYLKEFDLSGNNLTGSLPEILQGTDLCVSSNSPLPSLISMRLGNNHLKGKLP 396
           I    A    L+   L    L              VS+   LP L  + L  N + G L 
Sbjct: 41  IEGLTAEFVNLEFLSLINVGLI------------SVSNLPKLPKLKKLELSENRIFGGLD 88

Query: 397 EWLSQLENLVELTLSYNLLQGP-IPASLGNLKNLTKLNLPGN---QLNGTLPETLGSLPE 452
               +L NL  L LS N L+       L  L+ L  L+L       LN         LP+
Sbjct: 89  MLAEKLPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQ 148

Query: 453 LSVLD 457
           L+ LD
Sbjct: 149 LTYLD 153

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 44.3 bits (105), Expect = 4e-05
 Identities = 23/82 (28%), Positives = 36/82 (43%), Gaps = 3/82 (3%)

Query: 830 FIDLSGNNLHGDFPTQLTKLVGLVVLNLSRNHIGGQIPENISGLHQLASLDLSSNNLSGG 889
            +D   +N  G       + V L  L+L    +      N+  L +L  L+LS N + GG
Sbjct: 30  VLDNCKSND-GKIEGLTAEFVNLEFLSLINVGL--ISVSNLPKLPKLKKLELSENRIFGG 86

Query: 890 IPSSLSSLSFLGYINLSRNQLS 911
           +      L  L ++NLS N+L 
Sbjct: 87  LDMLAEKLPNLTHLNLSGNKLK 108

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 41.6 bits (98), Expect = 3e-04
 Identities = 25/106 (23%), Positives = 41/106 (38%), Gaps = 13/106 (12%)

Query: 692 LQSLHLNNNKLT-GNLPSSFQNLTSLETLDLGNNRFS--GNIPSLLGNGFVGLRILSLRS 748
           ++ L L+N K   G +        +LE L L N       N+P L       L+ L L  
Sbjct: 26  VRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISVSNLPKL-----PKLKKLELSE 80

Query: 749 NAFSGEIPSKLSNLSSLQVLDLAENNLTGSIPGSVGDLKAMAHVQN 794
           N   G +      L +L  L+L+ N L       +  L+ +  ++ 
Sbjct: 81  NRIFGGLDMLAEKLPNLTHLNLSGNKLK-----DISTLEPLKKLEC 121

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 60.9 bits (148), Expect = 1e-10
 Identities = 38/141 (26%), Positives = 64/141 (45%), Gaps = 16/141 (11%)

Query: 590 LPIVEIELLDLSNNHFS-GPIPQNISGSMPNLIFLSVSGNRLTGKIPGSIGEMQLLQVID 648
           +   E E ++L         +   +S ++     L++S N +  KI   +  M+ L+++ 
Sbjct: 20  VVATEAEKVELHGMIPPIEKMDATLS-TLKACKHLALSTNNIE-KISS-LSGMENLRILS 76

Query: 649 LSRNSISGSISSSIGNCTFLKVLDLSY---SSLSGVIPASLGQLTRLQSLHLNNNKLTGN 705
           L RN I   I +       L+ L +SY   +SLSG     + +L  L+ L+++NNK+T N
Sbjct: 77  LGRNLIK-KIENLDAVADTLEELWISYNQIASLSG-----IEKLVNLRVLYMSNNKIT-N 129

Query: 706 LPS--SFQNLTSLETLDLGNN 724
                    L  LE L L  N
Sbjct: 130 WGEIDKLAALDKLEDLLLAGN 150

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 59.3 bits (144), Expect = 4e-10
 Identities = 34/162 (20%), Positives = 64/162 (39%), Gaps = 20/162 (12%)

Query: 620 LIFLSVSGNRLTGKIPGSIGEMQLLQVIDLSRNSISGSISSSIGNCTFLKVLDLSYSSLS 679
            + L      +  K+  ++  ++  + + LS N+I   ISS +     L++L L  + + 
Sbjct: 27  KVELHGMIPPIE-KMDATLSTLKACKHLALSTNNIE-KISS-LSGMENLRILSLGRNLIK 83

Query: 680 GVIPASLGQLTRLQSLHLNNNKLTGNLPSSFQNLTSLETLDLGNNRFS--GNIPSLLGNG 737
             I         L+ L ++ N++  +L S  + L +L  L + NN+ +  G I  L    
Sbjct: 84  -KIENLDAVADTLEELWISYNQIA-SL-SGIEKLVNLRVLYMSNNKITNWGEIDKL--AA 138

Query: 738 FVGLRILSLRSNAFSGEIPSK----------LSNLSSLQVLD 769
              L  L L  N    +              +  L +L+ LD
Sbjct: 139 LDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD 180

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 55.5 bits (134), Expect = 9e-09
 Identities = 36/140 (25%), Positives = 57/140 (40%), Gaps = 25/140 (17%)

Query: 596 ELLDLSNNHFSGPIPQNISG--SMPNLIFLSVSGNRLTGKIPGSIGEMQLLQVIDLSRNS 653
           + L LS N+        IS    M NL  LS+  N +  KI         L+ + +S N 
Sbjct: 51  KHLALSTNNIE-----KISSLSGMENLRILSLGRNLIK-KIENLDAVADTLEELWISYNQ 104

Query: 654 ISGSISSSIGNCTFLKVLDLSY---SSLSGVIPASLGQLTRLQSLHLNNNKLTGNLPSS- 709
           I+ S+ S I     L+VL +S    ++   +    L  L +L+ L L  N L  +   + 
Sbjct: 105 IA-SL-SGIEKLVNLRVLYMSNNKITNWGEIDK--LAALDKLEDLLLAGNPLYNDYKENN 160

Query: 710 ---------FQNLTSLETLD 720
                     + L +L+ LD
Sbjct: 161 ATSEYRIEVVKRLPNLKKLD 180

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 53.9 bits (130), Expect = 3e-08
 Identities = 24/110 (21%), Positives = 45/110 (40%), Gaps = 15/110 (13%)

Query: 671 LDLSYSSLSGVIPASLGQLTRLQSLHLNNNKLT--GNLPSSFQNLTSLETLDLGNNRFS- 727
           L      +   + A+L  L   + L L+ N +    +L      + +L  L LG N    
Sbjct: 30  LHGMIPPIEK-MDATLSTLKACKHLALSTNNIEKISSL----SGMENLRILSLGRNLIKK 84

Query: 728 -GNIPSLLGNGFVGLRILSLRSNAFSGEIPSKLSNLSSLQVLDLAENNLT 776
             N+ ++       L  L +  N  +  + S +  L +L+VL ++ N +T
Sbjct: 85  IENLDAVADT----LEELWISYNQIA-SL-SGIEKLVNLRVLYMSNNKIT 128

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 50.8 bits (122), Expect = 3e-07
 Identities = 21/83 (25%), Positives = 36/83 (43%), Gaps = 5/83 (6%)

Query: 694 SLHLNNNKLTGNLPSSFQNLTSLETLDLGNNRFSGNIPSLLGNGFVGLRILSLRSNAFSG 753
            LH     +   + ++   L + + L L  N     I SL  +G   LRILSL  N    
Sbjct: 29  ELHGMIPPIE-KMDATLSTLKACKHLALSTNNIE-KISSL--SGMENLRILSLGRNLIK- 83

Query: 754 EIPSKLSNLSSLQVLDLAENNLT 776
           +I +  +   +L+ L ++ N + 
Sbjct: 84  KIENLDAVADTLEELWISYNQIA 106

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 50.8 bits (122), Expect = 3e-07
 Identities = 32/111 (28%), Positives = 52/111 (46%), Gaps = 5/111 (4%)

Query: 376 SPLPSLISMRLGNNHLKGKLPEWLSQLENLVELTLSYNLLQGPIPASLGNLKNLTKLNLP 435
           S L +   + L  N+++ K+   LS +ENL  L+L  NL++  I         L +L + 
Sbjct: 45  STLKACKHLALSTNNIE-KI-SSLSGMENLRILSLGRNLIKK-IENLDAVADTLEELWIS 101

Query: 436 GNQLNGTLPETLGSLPELSVLDVSSNSLTGIISEIHFSRLSKLKFLGLSSN 486
            NQ+       +  L  L VL +S+N +T        + L KL+ L L+ N
Sbjct: 102 YNQI--ASLSGIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGN 150

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 45.1 bits (107), Expect = 3e-05
 Identities = 31/170 (18%), Positives = 59/170 (34%), Gaps = 33/170 (19%)

Query: 302 LNFASNKLHGKLPSSVANMTSLTNFDLFD---KKVEGGIPSSIARLCYLKEFDLSGNNLT 358
           L+     +  K+ ++++ + +  +  L     +K+       ++ +  L+   L  N + 
Sbjct: 30  LHGMIPPIE-KMDATLSTLKACKHLALSTNNIEKISS-----LSGMENLRILSLGRNLIK 83

Query: 359 GSLPEILQGTDLCVSSNSPLPSLISMRLGNNHLKGKLPEWLSQLENLVELTLSYNLLQGP 418
               +I     +         +L  + +  N +   L   + +L NL  L +S N +   
Sbjct: 84  ----KIENLDAVA-------DTLEELWISYNQIA-SL-SGIEKLVNLRVLYMSNNKITNW 130

Query: 419 IP-ASLGNLKNLTKLNLPGNQLNGTLPET----------LGSLPELSVLD 457
                L  L  L  L L GN L     E           +  LP L  LD
Sbjct: 131 GEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD 180

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 42.7 bits (101), Expect = 2e-04
 Identities = 19/68 (27%), Positives = 32/68 (47%), Gaps = 7/68 (10%)

Query: 846 LTKLVGLVVLNLSRNHIGGQIPENISGLHQLASLDLSSNNLS--GGIPSSLSSLSFLGYI 903
           L+ L     L LS N+I  +I  ++SG+  L  L L  N +     + +   +L  L   
Sbjct: 44  LSTLKACKHLALSTNNIE-KI-SSLSGMENLRILSLGRNLIKKIENLDAVADTLEEL--- 98

Query: 904 NLSRNQLS 911
            +S NQ++
Sbjct: 99  WISYNQIA 106

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 60.4 bits (147), Expect = 1e-10
 Identities = 28/135 (20%), Positives = 49/135 (36%), Gaps = 10/135 (7%)

Query: 640 EMQLLQVIDLSRNSISGSISSSIGNCTFLKVLDLSYSSLSGVIPASLGQLTRLQSLHLNN 699
                + +DL    I   I +          +D S + +  +       L RL++L +NN
Sbjct: 17  NAVRDRELDLRGYKIP-VIENLGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNN 73

Query: 700 NKLTGNLPSSFQNLTSLETLDLGNNRFS--GNIPSLLGNGFVGLRILSLRSNAFSGEI-- 755
           N++        Q L  L  L L NN     G++  L       L  L +  N  + +   
Sbjct: 74  NRICRIGEGLDQALPDLTELILTNNSLVELGDLDPL--ASLKSLTYLCILRNPVTNKKHY 131

Query: 756 -PSKLSNLSSLQVLD 769
               +  +  ++VLD
Sbjct: 132 RLYVIYKVPQVRVLD 146

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 51.2 bits (123), Expect = 2e-07
 Identities = 27/135 (20%), Positives = 47/135 (34%), Gaps = 14/135 (10%)

Query: 593 VEIELLDLSNNHFSGPIPQNISGSMPNLIFLSVSGNRLTGKIPGSIGEMQLLQVIDLSRN 652
           V    LDL       P+ +N+  ++     +  S N +  K+ G    ++ L+ + ++ N
Sbjct: 19  VRDRELDLRGYKI--PVIENLGATLDQFDAIDFSDNEIR-KLDG-FPLLRRLKTLLVNNN 74

Query: 653 SISGSISSSIGNCTFLKVLDLSY---SSLSGVIPASLGQLTRLQSLHLNNNKLTGNLPS- 708
            I             L  L L+      L  + P  L  L  L  L +  N +T N    
Sbjct: 75  RICRIGEGLDQALPDLTELILTNNSLVELGDLDP--LASLKSLTYLCILRNPVT-NKKHY 131

Query: 709 ---SFQNLTSLETLD 720
                  +  +  LD
Sbjct: 132 RLYVIYKVPQVRVLD 146

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 49.7 bits (119), Expect = 6e-07
 Identities = 19/109 (17%), Positives = 42/109 (38%), Gaps = 3/109 (2%)

Query: 378 LPSLISMRLGNNHLKGKLPEWLSQLENLVELTLSYNLLQGPIPASLGNLKNLTKLNLPGN 437
                 + L    +   +    + L+    +  S N ++  +      L+ L  L +  N
Sbjct: 18  AVRDRELDLRGYKIP-VIENLGATLDQFDAIDFSDNEIR-KL-DGFPLLRRLKTLLVNNN 74

Query: 438 QLNGTLPETLGSLPELSVLDVSSNSLTGIISEIHFSRLSKLKFLGLSSN 486
           ++         +LP+L+ L +++NSL  +      + L  L +L +  N
Sbjct: 75  RICRIGEGLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLCILRN 123

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 47.3 bits (113), Expect = 3e-06
 Identities = 29/129 (22%), Positives = 47/129 (36%), Gaps = 15/129 (11%)

Query: 344 LCYLKEFDLSGN------NLTGSLPEI----LQGTDLCVSSN-SPLPSLISMRLGNNHLK 392
               +E DL G       NL  +L +         ++        L  L ++ + NN + 
Sbjct: 18  AVRDRELDLRGYKIPVIENLGATLDQFDAIDFSDNEIRKLDGFPLLRRLKTLLVNNNRIC 77

Query: 393 GKLPEWLSQLENLVELTLSYNLLQGP-IPASLGNLKNLTKLNLPGN---QLNGTLPETLG 448
                    L +L EL L+ N L        L +LK+LT L +  N            + 
Sbjct: 78  RIGEGLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIY 137

Query: 449 SLPELSVLD 457
            +P++ VLD
Sbjct: 138 KVPQVRVLD 146

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 43.9 bits (104), Expect = 6e-05
 Identities = 16/81 (19%), Positives = 31/81 (38%), Gaps = 3/81 (3%)

Query: 831 IDLSGNNLHGDFPTQLTKLVGLVVLNLSRNHIGGQIPENISGLHQLASLDLSSNNLSGGI 890
           +DL G  +          L     ++ S N I  +  +    L +L +L +++N +    
Sbjct: 24  LDLRGYKIP-VIENLGATLDQFDAIDFSDNEI--RKLDGFPLLRRLKTLLVNNNRICRIG 80

Query: 891 PSSLSSLSFLGYINLSRNQLS 911
                +L  L  + L+ N L 
Sbjct: 81  EGLDQALPDLTELILTNNSLV 101

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 41.2 bits (97), Expect = 5e-04
 Identities = 24/108 (22%), Positives = 46/108 (42%), Gaps = 12/108 (11%)

Query: 408 LTLSYNLLQGPIPASLGNLKNLTKLNLPGNQLNGTLPETLGS-LPELSVLDVSSNSLTGI 466
           + L+  L++    A   N     +L+L G ++   + E LG+ L +   +D S N +  +
Sbjct: 2   VKLTAELIEQA--AQYTNAVRDRELDLRGYKI--PVIENLGATLDQFDAIDFSDNEIRKL 57

Query: 467 ISEIHFSRLSKLKFLGLSSN--SFILNVSSSWIPPFQVQSLNMRSCQL 512
                F  L +LK L +++N    I       +P   +  L + +  L
Sbjct: 58  ---DGFPLLRRLKTLLVNNNRICRIGEGLDQALP--DLTELILTNNSL 100

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 40.4 bits (95), Expect = 8e-04
 Identities = 19/106 (17%), Positives = 37/106 (34%), Gaps = 4/106 (3%)

Query: 98  LEYLDLSFNTFNDIPIPEFLGSLENLQYLNLSEAGFTGVVPSSLGNLHRLQYFDVSAELF 157
            + +D S N    +   +    L  L+ L ++      +       L  L    ++    
Sbjct: 44  FDAIDFSDNEIRKL---DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSL 100

Query: 158 ALSADSLDWLTGLVSLKHLAMNRVDLSLVGSEWLGILKNLPNLTEL 203
                 LD L  L SL +L + R  ++      L ++  +P +  L
Sbjct: 101 V-ELGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVL 145

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 64.1 bits (155), Expect = 2e-10
 Identities = 93/563 (16%), Positives = 170/563 (30%), Gaps = 145/563 (25%)

Query: 324 TNFD-LFDK-KVEGGIPSSIARLCYLKEFDLSGNNLTGSLPEILQGTDLCVSSNSPLPSL 381
            N+  L    K E   PS + R+ Y+++ D   N+                  N      
Sbjct: 89  INYKFLMSPIKTEQRQPSMMTRM-YIEQRDRLYND------------------NQVFAKY 129

Query: 382 ISMRLGNNHLKGKLPEWLSQLEN----------------LVELTLSYNLLQGPIP----- 420
              RL       KL + L +L                  +         +Q  +      
Sbjct: 130 NVSRL---QPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFW 186

Query: 421 ASLGNLKNLTKLNLPGNQLNGTLPETLGSLPELSVLDVSSNSLTGIISEIHFSRLSKLKF 480
            +L N  +   +     +L   +     S       D SSN    I   IH  +    + 
Sbjct: 187 LNLKNCNSPETVLEMLQKLLYQIDPNWTSRS-----DHSSN----IKLRIHSIQAELRRL 237

Query: 481 LGLSS--NSF-IL-NVSSSWIPPFQVQSLNMRSCQLGPSFPSWLKTQQGVSFLDFSNASI 536
           L      N   +L NV ++        + N+  C++       L T +     DF +A+ 
Sbjct: 238 LKSKPYENCLLVLLNVQNAKA----WNAFNLS-CKI-------LLTTRFKQVTDFLSAAT 285

Query: 537 SGPIP----NWFWDISSKLSLLNVSLNQLQGQLP------NPLNIAPFADVDFRSNLLEG 586
           +  I     +         SLL   L+     LP      NP  ++  A+     ++ +G
Sbjct: 286 TTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAE-----SIRDG 340

Query: 587 PI---PLPIVEIE----LLDLSNNHFSGPIPQNISGSMPNL-IF-LSVSGNRLTGKIPGS 637
                    V  +    +++ S N      P         L +F  S         IP  
Sbjct: 341 LATWDNWKHVNCDKLTTIIESSLNVLE---PAEYRKMFDRLSVFPPSA-------HIP-- 388

Query: 638 IGEMQLLQVI--DLSRNSISGSISSSIGNCTFLKVLDLSYSSLSGVIPASLGQLTRLQSL 695
                LL +I  D+ ++ +   ++         K    S  S+  +      +L    +L
Sbjct: 389 ---TILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYAL 445

Query: 696 HLNNNKLTG--NLPSSF-QNLTSLETLD----------LGNNRFSGNIPSLLGNGFVGLR 742
           H     +    N+P +F  +      LD          L N      + +L    F+  R
Sbjct: 446 H---RSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERM-TLFRMVFLDFR 501

Query: 743 ILS--LRSNAFSGEIPSKLSNLSSLQVLDLAENNLTGSIP---GSVGDL-----KAMAHV 792
            L   +R ++ +      + N   LQ L   +  +  + P     V  +     K   ++
Sbjct: 502 FLEQKIRHDSTAWNASGSILNT--LQQLKFYKPYICDNDPKYERLVNAILDFLPKIEENL 559

Query: 793 -----QNIVKYLLFGRYRGIYYE 810
                 ++++  L      I+ E
Sbjct: 560 ICSKYTDLLRIALMAEDEAIFEE 582

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 54.5 bits (130), Expect = 2e-07
 Identities = 109/637 (17%), Positives = 192/637 (30%), Gaps = 184/637 (28%)

Query: 346 YLKEF--DLSGNNLTGSLPEILQGTDLCVSSNSPLPSLISMRLGNNHLKGKLPEW--LSQ 401
           +   F  +    ++      IL   ++     S      ++RL           W  LS+
Sbjct: 25  FEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRL----------FWTLLSK 74

Query: 402 LENLVE------LTLSYNLLQGPIPASLGNLKNLTKLNLPGNQLNGTLPETLGSLPELSV 455
            E +V+      L ++Y  L  PI                  +       T   + +   
Sbjct: 75  QEEMVQKFVEEVLRINYKFLMSPI----------------KTEQRQPSMMTRMYIEQRDR 118

Query: 456 L--DVSSNSLTGIISEIHFSRLSKLKFL-----GLSSNSFILNVSSSWIPPFQVQSLNMR 508
           L  D        + ++ + SRL     L      L     +L           +    + 
Sbjct: 119 LYNDNQ------VFAKYNVSRLQPYLKLRQALLELRPAKNVL-----------IDG--VL 159

Query: 509 SCQLGPSFPSWLKTQQGVSFLDFSNASISGPIPNWFW----DISSKLSLLNVSLNQLQGQ 564
               G +   W+               +   I   FW    + +S  ++L + L +L  Q
Sbjct: 160 GS--GKT---WV-ALDVCLSYKVQCK-MDFKI---FWLNLKNCNSPETVLEM-LQKLLYQ 208

Query: 565 LPNPLNIAPFADVDFRSNLLEGPIPLPIVEIE---------------LLDLSN------- 602
           +            D  SN     I L I  I+               LL L N       
Sbjct: 209 IDPNWTSRS----DHSSN-----IKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAW 259

Query: 603 NHFSGPIPQNISGSMPNLI---FLSVSGNRLTGKIPGSIGEMQLLQVIDLSRNSISGSIS 659
           N F      N+S  +  L+   F  V+ + L+      I        +D    +++    
Sbjct: 260 NAF------NLSCKI--LLTTRFKQVT-DFLSAATTTHI-------SLDHHSMTLTPDEV 303

Query: 660 SSIGNCTFLKVLDLSYSSLS-----------GVIPASLGQ-LTRLQ-SLHLNNNKLTGNL 706
            S+     LK LD     L             +I  S+   L       H+N +KLT  +
Sbjct: 304 KSL----LLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTII 359

Query: 707 PSSFQNLTSLET----LDLGNNRFSGNIPSLLGNGFVGLRIL-SLRSNAFSGEIPSKLSN 761
            SS   L   E       L     S +IP++L      L ++      +    + +KL  
Sbjct: 360 ESSLNVLEPAEYRKMFDRLSVFPPSAHIPTIL------LSLIWFDVIKSDVMVVVNKLHK 413

Query: 762 LSSLQVLDLAENNLTGSIPGSVGDLKAMAHVQNIVKYL---LFGRYRGIYYEENLVINTK 818
            S   +++      T SIP    +LK    ++N    L   +   Y      ++   +  
Sbjct: 414 YS---LVEKQPKESTISIPSIYLELK--VKLENE-YALHRSIVDHYNIPKTFDS---DDL 464

Query: 819 GSSKDTPRLFHFIDLSGNNLHGDFPTQLTKLVGLVVLNLSRNHIGGQIPENISGLHQLAS 878
                    +  I   G++L      +   L  +V L+     +  +I            
Sbjct: 465 IPPYLDQYFYSHI---GHHLKNIEHPERMTLFRMVFLDF--RFLEQKI-----------R 508

Query: 879 LDLSSNNLSGGIPSSLSSLSF-LGYINLSRNQLSGKI 914
            D ++ N SG I ++L  L F   YI  +  +    +
Sbjct: 509 HDSTAWNASGSILNTLQQLKFYKPYICDNDPKYERLV 545

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 52.2 bits (124), Expect = 9e-07
 Identities = 85/613 (13%), Positives = 164/613 (26%), Gaps = 214/613 (34%)

Query: 33  SENDLDALIDFKNGLEDPESRLASW----KGSNCCQ-WHGISCDDDTGAIVAINLGNPYH 87
           S+ ++D +I  K+ +    +    W    K     Q +       +   ++     +P  
Sbjct: 47  SKEEIDHIIMSKDAVS--GTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLM-----SPIK 99

Query: 88  VVNSDSSGSLLEYLDLSFNTFNDIPIPEFLGSLENLQYLNLSEAGFTGVVPSSLGNLHRL 147
                 S     Y++     +ND  +                             N+ RL
Sbjct: 100 TEQRQPSMMTRMYIEQRDRLYNDNQV----------------------FAK---YNVSRL 134

Query: 148 QYFDVSAELFALSADSLDWLTGLVSLKHLAMNRVDLSLVGSEWLGILKNLPNLTELHLSV 207
           Q +                      L+              + L  L+   N+      +
Sbjct: 135 QPYL--------------------KLR--------------QALLELRPAKNVL-----I 155

Query: 208 CGLTGSITSITPVNLTSPAVLDLSLNHFNSLFPN---WLVNISTLVYVDLSDCDLYGRIP 264
            G+ GS  +     +     L                WL         +L +C+    + 
Sbjct: 156 DGVLGSGKTW----VALDVCLSYK---VQCKMDFKIFWL---------NLKNCNSPETVL 199

Query: 265 IGFGELPNLQY-LSLAGNNNLSGSCSQLFRGSWKKIQILNFASNKLHGKLPSS------V 317
                L  L Y +     +    S +   R    + ++     +K +    +       V
Sbjct: 200 E---MLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPY---ENCLLVLLNV 253

Query: 318 ANMTSLTNFD-----LF---DKKVEGGIPSSIARLCYLKEF----------DLSGNNL-- 357
            N  +   F+     L     K+V   + ++      L              L    L  
Sbjct: 254 QNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDC 313

Query: 358 -TGSLP-EILQGTDLCVSSNSPLP-SLI--SMRLGNNHLKGKLPEWL----SQLENLVEL 408
               LP E+L          +P   S+I  S+R G          W      +L  ++E 
Sbjct: 314 RPQDLPREVLTT--------NPRRLSIIAESIRDGLATWD----NWKHVNCDKLTTIIE- 360

Query: 409 TLSYNLLQG-----------------PIPASLGNLKNLTKL--NLPGNQLNGTLPETLGS 449
             S N+L+                   IP  L     L+ +  ++  +     +   +  
Sbjct: 361 -SSLNVLEPAEYRKMFDRLSVFPPSAHIPTIL-----LSLIWFDVIKS----DVMVVVNK 410

Query: 450 LPELSVLDVSSNSLTGIISEIHFSRLSKL--------KFL-------GLSSNSFILNVSS 494
           L + S+++      T  I  I+     KL          +          S+  I     
Sbjct: 411 LHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLD 470

Query: 495 SWIPPFQVQSLNMRSCQLG---PSFPSWLKTQQGVSFLDFS--NASISGPIPNWFWDISS 549
            +   +     ++++ +       F           FLDF      I      W    ++
Sbjct: 471 QYF--YSHIGHHLKNIEHPERMTLFRMV--------FLDFRFLEQKIRHDSTAW----NA 516

Query: 550 KLSLLNVSLNQLQ 562
             S+LN  L QL+
Sbjct: 517 SGSILNT-LQQLK 528

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 42.5 bits (99), Expect = 7e-04
 Identities = 50/344 (14%), Positives = 101/344 (29%), Gaps = 108/344 (31%)

Query: 685 SLGQLTRLQSLHLNNNKLTGNLPSSFQNLTSLETLDLGNNRFSGNIPSLLGNGFVGLRIL 744
           +L      +++     KL   +  ++ + +            S NI   + +    LR L
Sbjct: 188 NLKNCNSPETVLEMLQKLLYQIDPNWTSRSD----------HSSNIKLRIHSIQAELRRL 237

Query: 745 SLRSNAFSGEIPSKLSNLSSLQVLDLAENNLTGSIPGSVGDLKAMAHVQN--IVKYLLFG 802
            L+S  +           + L VL                      +VQN          
Sbjct: 238 -LKSKPYE----------NCLLVLL---------------------NVQNAKAWNAFNLS 265

Query: 803 -------RYRGI--------YYEENLVINTKGSSKD-TPRLF-HFIDLSGNNLHGDFPTQ 845
                  R++ +            +L  ++   + D    L   ++D    +L    P +
Sbjct: 266 CKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDL----PRE 321

Query: 846 LTKLVGLVVLNLSRNHIGGQIPENISGLHQLASLDLSSNNLSGGIPSSLSSLSFLG---- 901
           +        L++    I   I + ++         ++ + L+  I SSL+ L        
Sbjct: 322 VLT-TNPRRLSI----IAESIRDGLATWDNW--KHVNCDKLTTIIESSLNVLEPAEYRKM 374

Query: 902 YINLSRNQLSGKIPFE------GHMTTFDASSFA------------GNPGLCGDP---LP 940
           +  LS    S  IP          +   D                         P   L 
Sbjct: 375 FDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLE 434

Query: 941 VKCQ-DDESDKGGNVVE----------DDNEDEFIDKWFYFSLG 973
           +K + ++E     ++V+          DD    ++D++FY  +G
Sbjct: 435 LKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIG 478

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} Length = 193

 Score = 59.6 bits (145), Expect = 4e-10
 Identities = 34/113 (30%), Positives = 50/113 (44%), Gaps = 18/113 (15%)

Query: 669 KVLDLSYSSLSGVIPASLGQLTRLQSLHLNNNKLTGNLPSSFQNLTSLETLDLGNNRFSG 728
             L L  +  + ++P  L     L  + L+NN+++     SF N+T L TL L  NR   
Sbjct: 34  TELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLR- 91

Query: 729 NIPSLLGNGFVGLRILSLRSN--------AFSGEIPSKLSNLSSLQVLDLAEN 773
            IP    +G   LR+LSL  N        AF        ++LS+L  L +  N
Sbjct: 92  CIPPRTFDGLKSLRLLSLHGNDISVVPEGAF--------NDLSALSHLAIGAN 136

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} Length = 193

 Score = 52.3 bits (126), Expect = 1e-07
 Identities = 34/102 (33%), Positives = 53/102 (51%), Gaps = 1/102 (0%)

Query: 623 LSVSGNRLTGKIPGSIGEMQLLQVIDLSRNSISGSISSSIGNCTFLKVLDLSYSSLSGVI 682
           L + GN+ T  +P  +   + L +IDLS N IS   + S  N T L  L LSY+ L  + 
Sbjct: 36  LYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIP 94

Query: 683 PASLGQLTRLQSLHLNNNKLTGNLPSSFQNLTSLETLDLGNN 724
           P +   L  L+ L L+ N ++     +F +L++L  L +G N
Sbjct: 95  PRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGAN 136

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} Length = 193

 Score = 51.5 bits (124), Expect = 2e-07
 Identities = 26/81 (32%), Positives = 39/81 (48%), Gaps = 4/81 (4%)

Query: 407 ELTLSYNLLQGPIPASLGNLKNLTKLNLPGNQLNGTLPE-TLGSLPELSVLDVSSNSLTG 465
           EL L  N     +P  L N K+LT ++L  N+++ TL   +  ++ +L  L +S N L  
Sbjct: 35  ELYLDGNQFTL-VPKELSNYKHLTLIDLSNNRIS-TLSNQSFSNMTQLLTLILSYNRLRC 92

Query: 466 IISEIHFSRLSKLKFLGLSSN 486
           I     F  L  L+ L L  N
Sbjct: 93  IPPRT-FDGLKSLRLLSLHGN 112

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} Length = 193

 Score = 50.4 bits (121), Expect = 4e-07
 Identities = 40/152 (26%), Positives = 57/152 (37%), Gaps = 44/152 (28%)

Query: 336 GIPSSIARLCYLKEFDLSGNNLTGSLPEILQGTDLCVSSNSPLPSLISMRLGNNHLKGKL 395
           GIP  +  L       L GN  T  +P+ L               L  + L NN +   L
Sbjct: 28  GIPRDVTEL------YLDGNQFT-LVPKELSN----------YKHLTLIDLSNNRIS-TL 69

Query: 396 PEWL-SQLENLVELTLSYNLLQGPIPASLGNLKNLTKLNLPGNQLNGTLPETLGSLPELS 454
                S +  L+ L LSYN L+   P +   LK+L  L+L GN ++         +PE  
Sbjct: 70  SNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLRLLSLHGNDIS--------VVPE-- 119

Query: 455 VLDVSSNSLTGIISEIHFSRLSKLKFLGLSSN 486
                     G      F+ LS L  L + +N
Sbjct: 120 ----------GA-----FNDLSALSHLAIGAN 136

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} Length = 193

 Score = 45.0 bits (107), Expect = 3e-05
 Identities = 30/120 (25%), Positives = 44/120 (36%), Gaps = 36/120 (30%)

Query: 669 KVLDLSYSSLSGV---IPASLGQLTRLQSLHLNNNKLTGNLPSSFQNLTSLETLDLGNNR 725
            V+  S   L  +   IP  +        L+L+ N+ T  +P    N   L  +DL NNR
Sbjct: 13  TVVRCSNKGLKVLPKGIPRDV------TELYLDGNQFT-LVPKELSNYKHLTLIDLSNNR 65

Query: 726 FSGNIPSLLGNGFVGLRILSLRSNAFSGEIPSKLSNLSSLQVLDLAENNLTGSIPGSVGD 785
                            I +L + +FS        N++ L  L L+ N L   IP    D
Sbjct: 66  -----------------ISTLSNQSFS--------NMTQLLTLILSYNRLR-CIPPRTFD 99

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 56.6 bits (137), Expect = 2e-09
 Identities = 39/134 (29%), Positives = 63/134 (47%), Gaps = 12/134 (8%)

Query: 594 EIELLDLSNNHFSGPIPQNISGSMPNLIFLSVSGNRLTGKIPGSIGEMQLLQVIDLSRNS 653
           +++ L L N+  +    + ++     L FLS     LT  I   + ++  L+ ++LS N 
Sbjct: 18  DVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLT-SIAN-LPKLNKLKKLELSDNR 75

Query: 654 ISGSISSSIGNCTFLKVLDLSY---SSLSGVIPASLGQLTRLQSLHLNNNKLTGNLP--- 707
           +SG +      C  L  L+LS      LS + P  L +L  L+SL L N ++T NL    
Sbjct: 76  VSGGLEVLAEKCPNLTHLNLSGNKIKDLSTIEP--LKKLENLKSLDLFNCEVT-NLNDYR 132

Query: 708 -SSFQNLTSLETLD 720
            + F+ L  L  LD
Sbjct: 133 ENVFKLLPQLTYLD 146

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 55.5 bits (134), Expect = 4e-09
 Identities = 30/129 (23%), Positives = 54/129 (41%), Gaps = 10/129 (7%)

Query: 646 VIDLSRNSISGSISSSIGNCTFLKVLDLSYSSLSGVIPASLGQLTRLQSLHLNNNKLTGN 705
           V+D SR++  G +         L+ L      L+ +  A+L +L +L+ L L++N+++G 
Sbjct: 23  VLDNSRSNE-GKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGG 79

Query: 706 LPSSFQNLTSLETLDLGNNRFS--GNIPSLLGNGFVGLRILSLRSNAFSGEI---PSKLS 760
           L    +   +L  L+L  N+      I  L       L+ L L +   +       +   
Sbjct: 80  LEVLAEKCPNLTHLNLSGNKIKDLSTIEPL--KKLENLKSLDLFNCEVTNLNDYRENVFK 137

Query: 761 NLSSLQVLD 769
            L  L  LD
Sbjct: 138 LLPQLTYLD 146

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 53.9 bits (130), Expect = 1e-08
 Identities = 27/101 (26%), Positives = 43/101 (42%), Gaps = 2/101 (1%)

Query: 386 LGNNHLKGKLPEWLSQLENLVELTLSYNLLQGPIPASLGNLKNLTKLNLPGNQLNGTLPE 445
             +   +GKL     + E L  L+     L     A+L  L  L KL L  N+++G L  
Sbjct: 25  DNSRSNEGKLEGLTDEFEELEFLSTINVGLT--SIANLPKLNKLKKLELSDNRVSGGLEV 82

Query: 446 TLGSLPELSVLDVSSNSLTGIISEIHFSRLSKLKFLGLSSN 486
                P L+ L++S N +  + +     +L  LK L L + 
Sbjct: 83  LAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNC 123

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 46.2 bits (110), Expect = 5e-06
 Identities = 28/125 (22%), Positives = 43/125 (34%), Gaps = 16/125 (12%)

Query: 337 IPSSIARLCYLKEFDLSGNNLTGSLPEILQGTDLCVSSNSPLPSLISMRLGNNHLKGKLP 396
           +         L+        LT             +++   L  L  + L +N + G L 
Sbjct: 34  LEGLTDEFEELEFLSTINVGLT------------SIANLPKLNKLKKLELSDNRVSGGLE 81

Query: 397 EWLSQLENLVELTLSYNLLQGP-IPASLGNLKNLTKLNLPGN---QLNGTLPETLGSLPE 452
               +  NL  L LS N ++       L  L+NL  L+L       LN         LP+
Sbjct: 82  VLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQ 141

Query: 453 LSVLD 457
           L+ LD
Sbjct: 142 LTYLD 146

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 45.1 bits (107), Expect = 2e-05
 Identities = 37/139 (26%), Positives = 56/139 (40%), Gaps = 16/139 (11%)

Query: 347 LKEFDLSGNNLTGSLPEILQGTDLCVSSNSPLPSLISMRLGNNHLKGKLPEWLSQLENLV 406
           +KE  L  +       ++   TD           L  +   N  L   +   L +L  L 
Sbjct: 19  VKELVLDNSRSN--EGKLEGLTD-------EFEELEFLSTINVGLT-SI-ANLPKLNKLK 67

Query: 407 ELTLSYNLLQGPIPASLGNLKNLTKLNLPGNQLN--GTLPETLGSLPELSVLDVSSNSLT 464
           +L LS N + G +        NLT LNL GN++    T+ E L  L  L  LD+ +  +T
Sbjct: 68  KLELSDNRVSGGLEVLAEKCPNLTHLNLSGNKIKDLSTI-EPLKKLENLKSLDLFNCEVT 126

Query: 465 GIIS--EIHFSRLSKLKFL 481
            +    E  F  L +L +L
Sbjct: 127 NLNDYRENVFKLLPQLTYL 145

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 42.4 bits (100), Expect = 1e-04
 Identities = 22/88 (25%), Positives = 35/88 (39%), Gaps = 8/88 (9%)

Query: 692 LQSLHLNNNKLT-GNLPSSFQNLTSLETLDLGNNRFS--GNIPSLLGNGFVGLRILSLRS 748
           ++ L L+N++   G L         LE L   N   +   N+P L       L+ L L  
Sbjct: 19  VKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSIANLPKL-----NKLKKLELSD 73

Query: 749 NAFSGEIPSKLSNLSSLQVLDLAENNLT 776
           N  SG +        +L  L+L+ N + 
Sbjct: 74  NRVSGGLEVLAEKCPNLTHLNLSGNKIK 101

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 42.0 bits (99), Expect = 2e-04
 Identities = 18/66 (27%), Positives = 31/66 (46%), Gaps = 2/66 (3%)

Query: 846 LTKLVGLVVLNLSRNHIGGQIPENISGLHQLASLDLSSNNLSGGIPSSLSSLSFLGYINL 905
             +   L  L+     +   I  N+  L++L  L+LS N +SGG+         L ++NL
Sbjct: 38  TDEFEELEFLSTINVGLT-SI-ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLNL 95

Query: 906 SRNQLS 911
           S N++ 
Sbjct: 96  SGNKIK 101

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A Length = 272

 Score = 58.5 bits (142), Expect = 2e-09
 Identities = 41/182 (22%), Positives = 71/182 (39%), Gaps = 21/182 (11%)

Query: 609 IPQNISGSMPNLIFLSVSGNRLTGKIPGSIGEMQLLQVIDLSRNSISGSISSSIGNCTFL 668
            P +           ++    +T         +  +  I  + + I       I     +
Sbjct: 13  FPDDAFAETIKA---NLKKKSVT-DAVTQNE-LNSIDQIIANNSDIKSV--QGIQYLPNV 65

Query: 669 KVLDLSYSSLSGVIPASLG---QLTRLQSLHLNNNKLTGNLPSS-FQNLTSLETLDLGNN 724
           + L L  + L       +    +LT L  L L  N+L  +LP+  F  LT+L+ L L  N
Sbjct: 66  RYLALGGNKLH-----DISALKELTNLTYLILTGNQLQ-SLPNGVFDKLTNLKELVLVEN 119

Query: 725 RFSGNIPSLLGNGFVGLRILSLRSNAFSGEIPSKL-SNLSSLQVLDLAENNLTGSIPGSV 783
           +   ++P  + +    L  L+L  N     +P  +   L++L  LDL+ N L  S+P  V
Sbjct: 120 QLQ-SLPDGVFDKLTNLTYLNLAHNQLQ-SLPKGVFDKLTNLTELDLSYNQLQ-SLPEGV 176

Query: 784 GD 785
            D
Sbjct: 177 FD 178

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A Length = 272

 Score = 51.2 bits (123), Expect = 6e-07
 Identities = 50/202 (24%), Positives = 82/202 (40%), Gaps = 23/202 (11%)

Query: 300 QILNFASNKLHGKLPSSVANMTSLTNFDLFDKKVEGGIPSSIARLCYLKEFDLSGNNLTG 359
              N     +     +    + S+      +  ++      I  L  ++   L GN L  
Sbjct: 22  IKANLKKKSV-TDAVTQN-ELNSIDQIIANNSDIKS--VQGIQYLPNVRYLALGGNKLH- 76

Query: 360 SLP---EILQGTDLCVSSNS----------PLPSLISMRLGNNHLKGKLPEWL-SQLENL 405
            +    E+   T L ++ N            L +L  + L  N L+  LP+ +  +L NL
Sbjct: 77  DISALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQ-SLPDGVFDKLTNL 135

Query: 406 VELTLSYNLLQGPIPASLGNLKNLTKLNLPGNQLNGTLPE-TLGSLPELSVLDVSSNSLT 464
             L L++N LQ         L NLT+L+L  NQL  +LPE     L +L  L +  N L 
Sbjct: 136 TYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQ-SLPEGVFDKLTQLKDLRLYQNQLK 194

Query: 465 GIISEIHFSRLSKLKFLGLSSN 486
            +   + F RL+ L+++ L  N
Sbjct: 195 SVPDGV-FDRLTSLQYIWLHDN 215

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A Length = 272

 Score = 48.9 bits (117), Expect = 4e-06
 Identities = 36/133 (27%), Positives = 60/133 (45%), Gaps = 3/133 (2%)

Query: 593 VEIELLDLSNNHFSGPIPQNISGSMPNLIFLSVSGNRLTGKIPGSIGEMQLLQVIDLSRN 652
             +  L L+ N     +P  +   + NL  L +  N+L     G   ++  L  ++L+ N
Sbjct: 85  TNLTYLILTGNQLQS-LPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHN 143

Query: 653 SISGSISSSI-GNCTFLKVLDLSYSSLSGVIPASLGQLTRLQSLHLNNNKLTGNLPSSFQ 711
            +  S+   +    T L  LDLSY+ L  +      +LT+L+ L L  N+L       F 
Sbjct: 144 QLQ-SLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKSVPDGVFD 202

Query: 712 NLTSLETLDLGNN 724
            LTSL+ + L +N
Sbjct: 203 RLTSLQYIWLHDN 215

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7 Length = 192

 Score = 56.9 bits (138), Expect = 3e-09
 Identities = 33/106 (31%), Positives = 53/106 (50%), Gaps = 2/106 (1%)

Query: 669 KVLDLSYSSLSGVIP-ASLGQLTRLQSLHLNNNKLTGNLPSSFQNLTSLETLDLGNNRFS 727
             L L+ + L  +      G+L  L  L L  N+LTG  P++F+  + ++ L LG N+  
Sbjct: 32  TELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIK 91

Query: 728 GNIPSLLGNGFVGLRILSLRSNAFSGEIPSKLSNLSSLQVLDLAEN 773
             I + +  G   L+ L+L  N  S  +P    +L+SL  L+LA N
Sbjct: 92  -EISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASN 136

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7 Length = 192

 Score = 53.5 bits (129), Expect = 4e-08
 Identities = 34/127 (26%), Positives = 59/127 (46%), Gaps = 24/127 (18%)

Query: 598 LDLSNNHFSGPIPQNISGSMPNLIFLSVSGNRLTGKIPGSIGEMQLLQVIDLSRNSISGS 657
           L L++N         + G +P+L+ L +  N+LTG  P +      +Q + L  N I   
Sbjct: 34  LLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIK-- 91

Query: 658 ISSSIGNCTFLKVLDLSYSSLSGVIPASLGQLTRLQSLHLNNNKLTGNLPSSFQNLTSLE 717
               I N  FL                    L +L++L+L +N+++  +P SF++L SL 
Sbjct: 92  ---EISNKMFLG-------------------LHQLKTLNLYDNQISCVMPGSFEHLNSLT 129

Query: 718 TLDLGNN 724
           +L+L +N
Sbjct: 130 SLNLASN 136

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7 Length = 192

 Score = 47.3 bits (113), Expect = 5e-06
 Identities = 26/81 (32%), Positives = 35/81 (43%), Gaps = 2/81 (2%)

Query: 407 ELTLSYNLLQG-PIPASLGNLKNLTKLNLPGNQLNGTLPETLGSLPELSVLDVSSNSLTG 465
           EL L+ N L         G L +L KL L  NQL G  P        +  L +  N +  
Sbjct: 33  ELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKE 92

Query: 466 IISEIHFSRLSKLKFLGLSSN 486
           I +++ F  L +LK L L  N
Sbjct: 93  ISNKM-FLGLHQLKTLNLYDN 112

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7 Length = 192

 Score = 41.5 bits (98), Expect = 4e-04
 Identities = 31/133 (23%), Positives = 51/133 (38%), Gaps = 19/133 (14%)

Query: 331 KKVEGGIPSSIARLCYLKEFDLSGNNLTGSLPEILQGTDLCVSSNSPLPSLISMRLGNNH 390
           K++   IP     L       L+ N L   +                LP L+ + L  N 
Sbjct: 21  KEIPRDIPLHTTEL------LLNDNELG-RISS--------DGLFGRLPHLVKLELKRNQ 65

Query: 391 LKGKLPEWL-SQLENLVELTLSYNLLQGPIPASL-GNLKNLTKLNLPGNQLNGTLPETLG 448
           L   +         ++ EL L  N ++  I   +   L  L  LNL  NQ++  +P +  
Sbjct: 66  LT-GIEPNAFEGASHIQELQLGENKIKE-ISNKMFLGLHQLKTLNLYDNQISCVMPGSFE 123

Query: 449 SLPELSVLDVSSN 461
            L  L+ L+++SN
Sbjct: 124 HLNSLTSLNLASN 136

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} Length = 229

 Score = 56.6 bits (137), Expect = 6e-09
 Identities = 40/127 (31%), Positives = 65/127 (51%), Gaps = 6/127 (4%)

Query: 669 KVLDLSYSSLSGVIPASLGQLTRLQSLHLNNNKLTGNLPSS-FQNLTSLETLDLGNNRFS 727
           ++L L  + ++ + P     L  L+ L+L +N+L   LP   F +LT L  LDLG N+ +
Sbjct: 43  QILYLHDNQITKLEPGVFDSLINLKELYLGSNQLG-ALPVGVFDSLTQLTVLDLGTNQLT 101

Query: 728 GNIPSLLGNGFVGLRILSLRSNAFSGEIPSKLSNLSSLQVLDLAENNLTGSIPGSVGD-L 786
             +PS + +  V L+ L +  N  + E+P  +  L+ L  L L +N L  SIP    D L
Sbjct: 102 -VLPSAVFDRLVHLKELFMCCNKLT-ELPRGIERLTHLTHLALDQNQLK-SIPHGAFDRL 158

Query: 787 KAMAHVQ 793
            ++ H  
Sbjct: 159 SSLTHAY 165

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} Length = 229

 Score = 52.8 bits (127), Expect = 1e-07
 Identities = 34/130 (26%), Positives = 60/130 (46%), Gaps = 4/130 (3%)

Query: 596 ELLDLSNNHFSGPIPQNISGSMPNLIFLSVSGNRLTGKIPGSIGEMQLLQVIDLSRNSIS 655
           ++L L +N  +  +   +  S+ NL  L +  N+L     G    +  L V+DL  N ++
Sbjct: 43  QILYLHDNQITK-LEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLT 101

Query: 656 GSISSSI-GNCTFLKVLDLSYSSLSGVIPASLGQLTRLQSLHLNNNKLTGNLPSSFQNLT 714
             + S++      LK L +  + L+  +P  + +LT L  L L+ N+L      +F  L+
Sbjct: 102 -VLPSAVFDRLVHLKELFMCCNKLTE-LPRGIERLTHLTHLALDQNQLKSIPHGAFDRLS 159

Query: 715 SLETLDLGNN 724
           SL    L  N
Sbjct: 160 SLTHAYLFGN 169

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} Length = 229

 Score = 49.3 bits (118), Expect = 2e-06
 Identities = 31/81 (38%), Positives = 42/81 (51%), Gaps = 3/81 (3%)

Query: 407 ELTLSYNLLQGPIPASLGNLKNLTKLNLPGNQLNGTLPETL-GSLPELSVLDVSSNSLTG 465
            L L  N +    P    +L NL +L L  NQL   LP  +  SL +L+VLD+ +N LT 
Sbjct: 44  ILYLHDNQITKLEPGVFDSLINLKELYLGSNQLG-ALPVGVFDSLTQLTVLDLGTNQLTV 102

Query: 466 IISEIHFSRLSKLKFLGLSSN 486
           + S + F RL  LK L +  N
Sbjct: 103 LPSAV-FDRLVHLKELFMCCN 122

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} Length = 229

 Score = 47.0 bits (112), Expect = 1e-05
 Identities = 33/124 (26%), Positives = 58/124 (46%), Gaps = 13/124 (10%)

Query: 672 DLSYSSLSGV---IPASLGQLTRLQSLHLNNNKLTGNLPSSFQNLTSLETLDLGNNRFSG 728
           D      + V   IP +       Q L+L++N++T   P  F +L +L+ L LG+N+   
Sbjct: 25  DCRSKRHASVPAGIPTNA------QILYLHDNQITKLEPGVFDSLINLKELYLGSNQLG- 77

Query: 729 NIPSLLGNGFVGLRILSLRSNAFSGEIPSKL-SNLSSLQVLDLAENNLTGSIPGSVGDLK 787
            +P  + +    L +L L +N  +  +PS +   L  L+ L +  N LT  +P  +  L 
Sbjct: 78  ALPVGVFDSLTQLTVLDLGTNQLT-VLPSAVFDRLVHLKELFMCCNKLT-ELPRGIERLT 135

Query: 788 AMAH 791
            + H
Sbjct: 136 HLTH 139

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} Length = 229

 Score = 43.1 bits (102), Expect = 2e-04
 Identities = 38/144 (26%), Positives = 54/144 (37%), Gaps = 23/144 (15%)

Query: 333 VEGGIPSSIARLCYLKEFDLSGNNLTGSLPEILQG----TDLCVSSNS----------PL 378
           V  GIP++   L       L  N +T   P +        +L + SN            L
Sbjct: 34  VPAGIPTNAQIL------YLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSL 87

Query: 379 PSLISMRLGNNHLKGKLPEWL-SQLENLVELTLSYNLLQGPIPASLGNLKNLTKLNLPGN 437
             L  + LG N L   LP  +  +L +L EL +  N L   +P  +  L +LT L L  N
Sbjct: 88  TQLTVLDLGTNQLT-VLPSAVFDRLVHLKELFMCCNKLTE-LPRGIERLTHLTHLALDQN 145

Query: 438 QLNGTLPETLGSLPELSVLDVSSN 461
           QL          L  L+   +  N
Sbjct: 146 QLKSIPHGAFDRLSSLTHAYLFGN 169

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} Length = 362

 Score = 56.6 bits (137), Expect = 2e-08
 Identities = 54/332 (16%), Positives = 112/332 (33%), Gaps = 47/332 (14%)

Query: 598 LDLSNNHFSGP----IPQNISGSMPNLIFLSVSGNRLTGKIPGSIGEM-----QLLQVID 648
           LDLS N+        + Q  + +  ++  L++SGN L  K    + ++       +  ++
Sbjct: 27  LDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLN 86

Query: 649 LSRNSISGSISSSIG-----NCTFLKVLDLSYSSLSGVIPASLGQL-----TRLQSLHLN 698
           LS N +S   S  +          + VLDL ++  S    +   Q        + SL+L 
Sbjct: 87  LSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLR 146

Query: 699 NNKLTGN----LPSSFQNL-TSLETLDLGNNRFSGN----IPSLLGNGFVGLRILSLRSN 749
            N L       L      +  ++ +L+L  N  +      +   L +    +  L L +N
Sbjct: 147 GNDLGIKSSDELIQILAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSAN 206

Query: 750 AFSGEIPSKLS-----NLSSLQVLDLAENNLTGSIPGSVGDLKAMAHVQNIVKYLLFGRY 804
               +  ++L+       + +  L+L  N L G    S+ +LK +      ++ +    Y
Sbjct: 207 LLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGP---SLENLKLLKDSLKHLQTVYLD-Y 262

Query: 805 RGIYYEENLVINTKGSSKDTPRLFHFIDLSGNNLHGDFPTQLTKLVGLVVLNLSRNHIGG 864
             +           G++    +    +D +G  +H      ++ L+  +        +  
Sbjct: 263 DIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIHPSHSIPISNLIRELSGKADVPSLLN 322

Query: 865 QIPENISGLHQ----------LASLDLSSNNL 886
           Q                    L     +   L
Sbjct: 323 QCLIFAQKHQTNIEDLNIPDELRESIQTCKPL 354

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} Length = 362

 Score = 55.5 bits (134), Expect = 4e-08
 Identities = 57/309 (18%), Positives = 109/309 (35%), Gaps = 76/309 (24%)

Query: 644 LQVIDLSRNSISGSISSSIG-----NCTFLKVLDLSYSSLSGVIPASLGQL-----TRLQ 693
           +  +DLS N++    +  +          +  L+LS +SL       L Q+       + 
Sbjct: 24  VTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVT 83

Query: 694 SLHLNNNKLTGN----LPSSFQNL-TSLETLDLGNNRFSGN----IPSLLGNGFVGLRIL 744
           SL+L+ N L+      L  +   +  ++  LDLG N FS            N    +  L
Sbjct: 84  SLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSL 143

Query: 745 SLRSNAFSGE----IPSKLSNL-SSLQVLDLAENNLTGSIPGSVGDL-KAMAHVQNIVKY 798
           +LR N    +    +   L+ + +++  L+L  NNL      +  +L K +A +   V  
Sbjct: 144 NLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNLA---SKNCAELAKFLASIPASVTS 200

Query: 799 LLFGRYRGIYYEENLVINTKGSSKDTPRLFHFIDLSGNNLHGDFPTQLTKLV-----GLV 853
           L                                DLS N L      +L  +       +V
Sbjct: 201 L--------------------------------DLSANLLGLKSYAELAYIFSSIPNHVV 228

Query: 854 VLNLSRNHIGGQIPENISGL----HQLASLDLSSNNLSG-------GIPSSLSSLSFLGY 902
            LNL  N + G   EN+  L      L ++ L  + +          + ++  ++  +  
Sbjct: 229 SLNLCLNCLHGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIIL 288

Query: 903 INLSRNQLS 911
           ++ +  ++ 
Sbjct: 289 VDKNGKEIH 297

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} Length = 362

 Score = 51.6 bits (124), Expect = 6e-07
 Identities = 34/215 (15%), Positives = 69/215 (32%), Gaps = 34/215 (15%)

Query: 595 IELLDLSNNHFSGP----IPQNISGSMPNLIFLSVSGNRLTGKIPGSIGEM-----QLLQ 645
           I  L+L  N         + Q ++    N+  L++ GN L  K    + +        + 
Sbjct: 140 ITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVT 199

Query: 646 VIDLSRNSISGSISSSIG-----NCTFLKVLDLSYSSLSGV----IPASLGQLTRLQSLH 696
            +DLS N +     + +          +  L+L  + L G     +      L  LQ+++
Sbjct: 200 SLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQTVY 259

Query: 697 LNNNKLTG-------NLPSSFQNLTSLETLDLGNNRFSG----NIPSLLGNGFVGLRILS 745
           L+ + +          L ++F N+  +  +D             I +L+        + S
Sbjct: 260 LDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIHPSHSIPISNLIRELSGKADVPS 319

Query: 746 LRSNAFS-----GEIPSKLSNLSSLQVLDLAENNL 775
           L +               L+    L+        L
Sbjct: 320 LLNQCLIFAQKHQTNIEDLNIPDELRESIQTCKPL 354

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} Length = 362

 Score = 50.5 bits (121), Expect = 1e-06
 Identities = 39/204 (19%), Positives = 73/204 (35%), Gaps = 41/204 (20%)

Query: 595 IELLDLSNNHFSG----PIPQNISGSMPNLIFLSVSGNRLTGKIPGSIGEM-----QLLQ 645
           I +LDL  N FS        Q  S    ++  L++ GN L  K    + ++       + 
Sbjct: 111 ITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANVN 170

Query: 646 VIDLSRNSIS----GSISSSI-GNCTFLKVLDLSYSSLSGVIPASLGQL-----TRLQSL 695
            ++L  N+++      ++  +      +  LDLS + L     A L  +       + SL
Sbjct: 171 SLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSL 230

Query: 696 HLNNNKLTG----NLPSSFQNLTSLETLDLGNNRFSGNIPSLLGNGFVGLRILSLRSNAF 751
           +L  N L G    NL     +L  L+T+ L  +    N+           + L       
Sbjct: 231 NLCLNCLHGPSLENLKLLKDSLKHLQTVYLDYDIV-KNM------SKEQCKALG------ 277

Query: 752 SGEIPSKLSNLSSLQVLDLAENNL 775
                +   N+  + ++D     +
Sbjct: 278 -----AAFPNIQKIILVDKNGKEI 296

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} Length = 362

 Score = 48.9 bits (117), Expect = 4e-06
 Identities = 53/345 (15%), Positives = 107/345 (31%), Gaps = 58/345 (16%)

Query: 193 ILKNLPNLTELHLSVCGLTGS----ITSITPVNLTSPAVLDLSLNHF-----NSLFPNWL 243
                  +T L LS+  L       +         S   L+LS N       + L     
Sbjct: 17  FTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILA 76

Query: 244 VNISTLVYVDLSDCDLYGRIPIGFGEL-----PNLQYLSLAGNNNLSGSC----SQLFRG 294
              + +  ++LS   L  +      +        +  L L G N+ S        Q F  
Sbjct: 77  AIPANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDL-GWNDFSSKSSSEFKQAFSN 135

Query: 295 SWKKIQILNFASNKLHGKLPSSVANM-----TSLTNFDLFDKKV--EGGIPSSIARL--- 344
               I  LN   N L  K    +  +      ++ + +L    +  +    + +A+    
Sbjct: 136 LPASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNLASKNC--AELAKFLAS 193

Query: 345 --CYLKEFDLSGNNLTGSLPEILQGTDLCVSSNSPLPSLISMRLGNNHLKGK----LPEW 398
               +   DLS N L           +L    +S    ++S+ L  N L G     L   
Sbjct: 194 IPASVTSLDLSANLLGLKS-----YAELAYIFSSIPNHVVSLNLCLNCLHGPSLENLKLL 248

Query: 399 LSQLENLVELTLSYNLLQGP-------IPASLGNLKNLTKLNLPGNQLNGTLPETLGSLP 451
              L++L  + L Y++++         + A+  N++ +  ++  G +++ +    + +L 
Sbjct: 249 KDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIHPSHSIPISNLI 308

Query: 452 E-----LSVLDVSSNSLTGIISEIHFSRLSK----LKFLGLSSNS 487
                   V  + +  L                  L+    +   
Sbjct: 309 RELSGKADVPSLLNQCLIFAQKHQTNIEDLNIPDELRESIQTCKP 353

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} Length = 362

 Score = 43.9 bits (104), Expect = 2e-04
 Identities = 65/371 (17%), Positives = 113/371 (30%), Gaps = 81/371 (21%)

Query: 399 LSQLENLVELTLSYNLLQGPIPASLG-----NLKNLTKLNLPGNQLNGT----LPETLGS 449
            S    +  L LS N L       L         ++T LNL GN L       L + L +
Sbjct: 18  TSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAA 77

Query: 450 LPE-LSVLDVSSNSLTGI----ISEIHFSRLSKLKFLGLSSNSFILNVSSSWI------P 498
           +P  ++ L++S N L+      + +   +    +  L L  N    + SSS         
Sbjct: 78  IPANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWND-FSSKSSSEFKQAFSNL 136

Query: 499 PFQVQSLNMRSCQLGPSFPSWLKTQQGVSFLDFSNASISGPIPNWFWDISSKLSLLNVSL 558
           P  + SLN+R   LG          +    L                 I + ++ LN+  
Sbjct: 137 PASITSLNLRGNDLGI---------KSSDEL--IQI---------LAAIPANVNSLNLRG 176

Query: 559 NQLQGQLPNPLNIAPFADVDFRSNLLEGPIPLPIVEIELLDLSNNHFS----GPIPQNIS 614
           N L        N A  A       L   P  +       LDLS N         +    S
Sbjct: 177 NNLA-----SKNCAELAKF-----LASIPASV-----TSLDLSANLLGLKSYAELAYIFS 221

Query: 615 GSMPNLIFLSVSGNRLTGKIPGSIGEMQL----LQVIDLSRNSISG-------SISSSIG 663
               +++ L++  N L G    ++  ++     LQ + L  + +         ++ ++  
Sbjct: 222 SIPNHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFP 281

Query: 664 NCTFLKVLDLSYSSLSGVIPASLGQL-----TRLQSLHLNNNKLT-----GNLPSSFQNL 713
           N   + ++D +   +       +  L      +     L N  L                
Sbjct: 282 NIQKIILVDKNGKEIHPSHSIPISNLIRELSGKADVPSLLNQCLIFAQKHQTNIEDLNIP 341

Query: 714 TSLETLDLGNN 724
             L        
Sbjct: 342 DELRESIQTCK 352

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A Length = 336

 Score = 56.0 bits (135), Expect = 3e-08
 Identities = 40/195 (20%), Positives = 73/195 (37%), Gaps = 27/195 (13%)

Query: 94  SGSLLEYLDLSFNTFNDIPIPEFLGSLENLQYLNLSEAGFTGVVPSSLGNLHRLQYFDVS 153
           S   ++++DLS +      +   L     LQ L+L     +  + ++L     L   ++S
Sbjct: 91  SPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLS 150

Query: 154 AELFALSADSLDWL-TGLVSLKHLAMNR-VDLSLVGSEWLGILKNLPNLTELHLSVCGLT 211
                 S  +L  L +    L  L ++   D +    +   +      +T+L+LS  G  
Sbjct: 151 -GCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVA-VAHVSETITQLNLS--GYR 206

Query: 212 GSITSITPVNLTSPAVLDLSLNHFNSLFPNWLVNISTLVYVDLSDCD-LYGRIPIGFGEL 270
            ++                 L+      PN       LV++DLSD   L       F +L
Sbjct: 207 KNLQ-------------KSDLSTLVRRCPN-------LVHLDLSDSVMLKNDCFQEFFQL 246

Query: 271 PNLQYLSLAGNNNLS 285
             LQ+LSL+   ++ 
Sbjct: 247 NYLQHLSLSRCYDII 261

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A Length = 336

 Score = 49.1 bits (117), Expect = 4e-06
 Identities = 39/186 (20%), Positives = 74/186 (39%), Gaps = 11/186 (5%)

Query: 595 IELLDLSNNHFSGPIPQNISGSMPNLIFLSVSGNRLTGKIPGSIGEMQLLQVIDLSR-NS 653
           ++ +DLSN+         I      L  LS+ G RL+  I  ++ +   L  ++LS  + 
Sbjct: 95  VQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSG 154

Query: 654 IS-GSISSSIGNCTFLKVLDLSYSSL---SGVIPASLGQLTRLQSLHLN--NNKLTGN-L 706
            S  ++ + + +C+ L  L+LS+        V  A       +  L+L+     L  + L
Sbjct: 155 FSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDL 214

Query: 707 PSSFQNLTSLETLDL-GNNRFSGNIPSLLGNGFVGLRILSLRS-NAFSGEIPSKLSNLSS 764
            +  +   +L  LDL  +     +           L+ LSL        E   +L  + +
Sbjct: 215 STLVRRCPNLVHLDLSDSVMLKNDCFQEFFQ-LNYLQHLSLSRCYDIIPETLLELGEIPT 273

Query: 765 LQVLDL 770
           L+ L +
Sbjct: 274 LKTLQV 279

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A Length = 336

 Score = 48.0 bits (114), Expect = 9e-06
 Identities = 35/204 (17%), Positives = 70/204 (34%), Gaps = 9/204 (4%)

Query: 577 VDFRSNLLEGPIPLPIVEIELLDLSNNHFSGPIPQNISGSMPNLIFLSVSGNRLTGK-IP 635
           +D     L   +   ++   ++           P     S   +  + +S + +    + 
Sbjct: 52  LDLTGKNLHPDVTGRLLSQGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLH 111

Query: 636 GSIGEMQLLQVIDLSRNSISGSISSSIGNCTFLKVLDLSY-SSLSGVIPASLGQ-LTRLQ 693
           G + +   LQ + L    +S  I +++   + L  L+LS  S  S     +L    +RL 
Sbjct: 112 GILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLD 171

Query: 694 SLHLNN-NKLT--GNLPSSFQNLTSLETLDLG--NNRFSGNIPSLLGNGFVGLRILSLRS 748
            L+L+     T      +      ++  L+L         +  S L      L  L L  
Sbjct: 172 ELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSD 231

Query: 749 NAF-SGEIPSKLSNLSSLQVLDLA 771
           +     +   +   L+ LQ L L+
Sbjct: 232 SVMLKNDCFQEFFQLNYLQHLSLS 255

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A Length = 336

 Score = 44.9 bits (106), Expect = 1e-04
 Identities = 56/311 (18%), Positives = 108/311 (34%), Gaps = 52/311 (16%)

Query: 152 VSAELFALSADSLDWLTGLVSLKHLAMNRVDLSLVGSEWLGILKNLPNLTELHLSVCGLT 211
           V    + L++D   W T  + L    ++      + S+ +   +   +  +  L+     
Sbjct: 35  VCKRWYRLASDESLWQT--LDLTGKNLHPDVTGRLLSQGVIAFRCPRSFMDQPLAEHF-- 90

Query: 212 GSITSITPVNLTSPAVLDLSLNHFNSLFPNWLVNISTLVYVDLSDCDLYGRIPIGFGELP 271
            S   +  ++L++  +   +L+   S           L  + L    L   I     +  
Sbjct: 91  -SPFRVQHMDLSNSVIEVSTLHGILSQCSK-------LQNLSLEGLRLSDPIVNTLAKNS 142

Query: 272 NLQYLSLAGNNNLS-GSCSQLFRGSWKKIQILNFASNKLHGKLPSSVANMTSLTNFDLFD 330
           NL  L+L+G +  S  +   L      ++  LN             ++     T      
Sbjct: 143 NLVRLNLSGCSGFSEFALQTLLSSC-SRLDELN-------------LSWCFDFTE----- 183

Query: 331 KKVEGGIPSSIARLC-YLKEFDLSG--NNLT-GSLPEILQGTDLCVSSNSPLPSLISMRL 386
                 +  ++A +   + + +LSG   NL    L  +++            P+L+ + L
Sbjct: 184 ----KHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRR----------CPNLVHLDL 229

Query: 387 -GNNHLKGKLPEWLSQLENLVELTLSYNLLQGPI-PASLGNLKNLTKLNLPGNQLNGTLP 444
             +  LK    +   QL  L  L+LS      P     LG +  L  L + G   +GTL 
Sbjct: 230 SDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGIVPDGTLQ 289

Query: 445 ETLGSLPELSV 455
               +LP L +
Sbjct: 290 LLKEALPHLQI 300

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri} Length = 208

 Score = 52.0 bits (125), Expect = 2e-07
 Identities = 37/138 (26%), Positives = 58/138 (42%), Gaps = 19/138 (13%)

Query: 645 QVIDLSRNSISGSISSSIGNCTFLKVLDLSYSSLSGVIPASLGQLTRLQSLHLNNNKLTG 704
             +DL  NS+    +      T L  L L  + L  +      +LT L  L+L+ N+L  
Sbjct: 31  TYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQ- 89

Query: 705 NLPSS-FQNLTSLETLDLGNNRFSGNIPSLLGNGFVGLRILSLRSN--------AFSGEI 755
           +LP+  F  LT L+ L L  N+   ++P  + +    L+ L L  N         F    
Sbjct: 90  SLPNGVFDKLTQLKELALNTNQLQ-SLPDGVFDKLTQLKDLRLYQNQLKSVPDGVF---- 144

Query: 756 PSKLSNLSSLQVLDLAEN 773
                 L+SLQ + L +N
Sbjct: 145 ----DRLTSLQYIWLHDN 158

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri} Length = 208

 Score = 50.1 bits (120), Expect = 8e-07
 Identities = 46/156 (29%), Positives = 66/156 (42%), Gaps = 21/156 (13%)

Query: 333 VEGGIPSSIARLCYLKEFDLSGNNLTGSLPEILQGTDLCVSSNSPLPSLISMRLGNNHLK 392
           V  GIP+    L      DL  N+L      +             L SL  + LG N L+
Sbjct: 22  VPTGIPAQTTYL------DLETNSLKSLPNGVFDE----------LTSLTQLYLGGNKLQ 65

Query: 393 GKLPEWL-SQLENLVELTLSYNLLQGPIPASLGNLKNLTKLNLPGNQLNGTLPE-TLGSL 450
             LP  + ++L +L  L LS N LQ         L  L +L L  NQL  +LP+     L
Sbjct: 66  -SLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELALNTNQLQ-SLPDGVFDKL 123

Query: 451 PELSVLDVSSNSLTGIISEIHFSRLSKLKFLGLSSN 486
            +L  L +  N L  +   + F RL+ L+++ L  N
Sbjct: 124 TQLKDLRLYQNQLKSVPDGV-FDRLTSLQYIWLHDN 158

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri} Length = 208

 Score = 45.0 bits (107), Expect = 3e-05
 Identities = 34/118 (28%), Positives = 49/118 (41%), Gaps = 13/118 (11%)

Query: 672 DLSYSSLSGV---IPASLGQLTRLQSLHLNNNKLTGNLPSSFQNLTSLETLDLGNNRFSG 728
           +      + V   IPA          L L  N L       F  LTSL  L LG N+   
Sbjct: 13  ECYSQGRTSVPTGIPAQT------TYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQ- 65

Query: 729 NIPSLLGNGFVGLRILSLRSNAFSGEIPSKL-SNLSSLQVLDLAENNLTGSIPGSVGD 785
           ++P+ + N    L  L+L +N     +P+ +   L+ L+ L L  N L  S+P  V D
Sbjct: 66  SLPNGVFNKLTSLTYLNLSTNQLQ-SLPNGVFDKLTQLKELALNTNQLQ-SLPDGVFD 121

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens} Length = 372

 Score = 53.2 bits (128), Expect = 3e-07
 Identities = 29/199 (14%), Positives = 68/199 (34%), Gaps = 35/199 (17%)

Query: 595 IELLDLSNNHFSGPIPQNISGSMPNLIFLSVSGNRLTGKIPGSIGEMQL-----LQVIDL 649
           ++ ++L++        + +         L +  N L  +    + ++ L     +  + L
Sbjct: 103 LDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLLHDQCQITTLRL 162

Query: 650 SRNSISGS----ISSSIGNCTFLKVLDLSYSSLS--GV--IPASLGQLTRLQSLHLNNNK 701
           S N ++ +    +   +   T +  L L ++ L   G+  + A L +  +LQ L++  N 
Sbjct: 163 SNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNG 222

Query: 702 LTGN----LPSSFQNLTSLETLDLGNNRFSGNIPSLLGNGFVGLRILSLRSNAFSGEIPS 757
                   L  + +   SLE L L  N               G ++L         ++  
Sbjct: 223 AGDTAALALARAAREHPSLELLHLYFNEL----------SSEGRQVLR--------DLGG 264

Query: 758 KLSNLSSLQVLDLAENNLT 776
                + + V       ++
Sbjct: 265 AAEGGARVVVSLTEGTAVS 283

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens} Length = 372

 Score = 50.1 bits (120), Expect = 2e-06
 Identities = 30/154 (19%), Positives = 55/154 (35%), Gaps = 18/154 (11%)

Query: 641 MQLLQVIDLSRNSISGSISSSIG-----NCTFLKVLDLSYSSLSGVIPASLGQ-LTRLQS 694
           +  L+ ++L+   ++    + +          L  ++L+   L      +L     R + 
Sbjct: 71  LSSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARK 130

Query: 695 LHLNNNKLTGN----LPSSFQ-NLTSLETLDLGNNRFSGNIPSLLGNGFVG---LRILSL 746
           L L  N L       L      +   + TL L NN  +    ++L  G  G   +  LSL
Sbjct: 131 LGLQLNSLGPEACKDLRDLLLHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSL 190

Query: 747 RSNAFSGE----IPSKLSNLSSLQVLDLAENNLT 776
                  E    + ++L     LQ L++A N   
Sbjct: 191 LHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAG 224

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis} Length = 362

 Score = 51.5 bits (122), Expect = 8e-07
 Identities = 23/132 (17%), Positives = 43/132 (32%), Gaps = 12/132 (9%)

Query: 656 GSISSSIGNCTFLKVLDLSYSSLSGVIPASLGQLTRL--QSLHLNNNKLTGNLPSSFQNL 713
             +S  +     L  L +  ++   +       L  L   S  L ++ +   L S   NL
Sbjct: 162 VDLSPVLDAMPLLNNLKIKGTNNLSIGKKPRPNLKSLEIISGGLPDSVVEDILGSDLPNL 221

Query: 714 TSLETLDLGNNRFSGNI------PSLLGNGFVGLRILSLRSNAFSGEIPSKLSN---LSS 764
             L  L +G   +  +       P    + F  L+ L +        +         L  
Sbjct: 222 EKLV-LYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQ 280

Query: 765 LQVLDLAENNLT 776
           L+ +D++   LT
Sbjct: 281 LETMDISAGVLT 292

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis} Length = 362

 Score = 50.7 bits (120), Expect = 1e-06
 Identities = 22/139 (15%), Positives = 43/139 (30%), Gaps = 18/139 (12%)

Query: 618 PNLIFLSVSGNRLTGKIPGSIGEMQL--LQVIDLSRNSISGSISSSI---------GNCT 666
           PNL  L +    L   +   I    L  L+ + L            +             
Sbjct: 193 PNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFP 252

Query: 667 FLKVLDLSYSSLSGVIPASLGQ---LTRLQSLHLNNNKLTGN----LPSSFQNLTSLETL 719
            LK L +  +    V+     +   L +L+++ ++   LT      L      +  L+ +
Sbjct: 253 NLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFI 312

Query: 720 DLGNNRFSGNIPSLLGNGF 738
           ++  N  S  +   L    
Sbjct: 313 NMKYNYLSDEMKKELQKSL 331

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis} Length = 362

 Score = 46.5 bits (109), Expect = 3e-05
 Identities = 24/202 (11%), Positives = 53/202 (26%), Gaps = 43/202 (21%)

Query: 704 GNLPSSFQNLTSLETLDLGNNRFSGNIPSLLGNGFVGLRILSLRSNAFSGEIPSKL--SN 761
            +L      +  L  L +       N  S+       L+ L + S      +   +  S+
Sbjct: 162 VDLSPVLDAMPLLNNLKI----KGTNNLSIGKKPRPNLKSLEIISGGLPDSVVEDILGSD 217

Query: 762 LSSLQVLDLAENNLTGSIPGSVGDLKAMAHVQNIVKYLLFGRYRGIYYEENLVINTKGSS 821
           L +L+ L L          G +   + +                                
Sbjct: 218 LPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRF-------------------------- 251

Query: 822 KDTPRLFHFIDLSGNNLHGDFPTQLTK---LVGLVVLNLSRNHIGG----QIPENISGLH 874
              P L     +              +   L  L  +++S   +       + +++  + 
Sbjct: 252 ---PNLKWL-GIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIK 307

Query: 875 QLASLDLSSNNLSGGIPSSLSS 896
            L  +++  N LS  +   L  
Sbjct: 308 HLKFINMKYNYLSDEMKKELQK 329

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis} Length = 362

 Score = 45.7 bits (107), Expect = 5e-05
 Identities = 28/175 (16%), Positives = 51/175 (29%), Gaps = 27/175 (15%)

Query: 306 SNKLHGKLPSSVANMTSLTNFDLFDKKVEGGIPSSIARLCYLKEFDLSGNNLTGSLPEIL 365
           S      L   +  M  L N  +   K    +         LK  ++    L  S+ E +
Sbjct: 157 SWIEQVDLSPVLDAMPLLNNLKI---KGTNNLSIGKKPRPNLKSLEIISGGLPDSVVEDI 213

Query: 366 QGTDLCVSSNSPLPSLISMRL---GNNHLKGKLPEWLSQL------ENLVELTLSYNLLQ 416
                     S LP+L  + L     ++           L       NL  L +     Q
Sbjct: 214 --------LGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAEEQ 265

Query: 417 GPIPASLGN---LKNLTKLNLPGNQLNGT----LPETLGSLPELSVLDVSSNSLT 464
             +         L  L  +++    L       L + +  +  L  +++  N L+
Sbjct: 266 NVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLS 320

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis} Length = 362

 Score = 44.2 bits (103), Expect = 1e-04
 Identities = 36/198 (18%), Positives = 66/198 (33%), Gaps = 21/198 (10%)

Query: 306 SNKLHGKLPSSVANMTSLTNFDLFDKKVEGGIPSSIARLCYLKEFDLSGNNLTGSLPEIL 365
            + +   +  +             D   E    S I     L     +   L     +I 
Sbjct: 124 CSDIADGIVENKEKFAHFEGLFWGDIDFEEQEISWI-EQVDLSPVLDAMPLLNNL--KIK 180

Query: 366 QGTDLCVSSNSPLPSLISMRLGNNHLKGKLPEWL--SQLENLVELTLSYNLLQGPIPASL 423
              +L +    P P+L S+ + +  L   + E +  S L NL +L L   +        +
Sbjct: 181 GTNNLSIGKK-PRPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDM 239

Query: 424 GNL---------KNLTKLNLPGNQLNGTLPETLGS---LPELSVLDVSSNSLTGIISEI- 470
                        NL  L +   +    + E       LP+L  +D+S+  LT   + + 
Sbjct: 240 NVFRPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLL 299

Query: 471 --HFSRLSKLKFLGLSSN 486
             H  ++  LKF+ +  N
Sbjct: 300 LDHVDKIKHLKFINMKYN 317

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis} Length = 362

 Score = 43.4 bits (101), Expect = 3e-04
 Identities = 27/206 (13%), Positives = 65/206 (31%), Gaps = 21/206 (10%)

Query: 182 DLSLVGSEWLGILKNLPNLTELHLSVCGLTGSITSITPVNLTSPAVLDLSLNHFNSLFPN 241
           D S +    +   +   +   L            S       SP +  + L +   +   
Sbjct: 123 DCSDIADGIVENKEKFAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGT 182

Query: 242 WLVNISTLVYVDLSDCDLYGRIP-------IGFGELPNLQYLSLA-------GNNNLSGS 287
             ++I      +L   ++            I   +LPNL+ L L         + +++  
Sbjct: 183 NNLSIGKKPRPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVF 242

Query: 288 CSQLFRGSWKKIQILNFASNKLHGKLPSSVAN---MTSLTNFDLFDKKV--EGG--IPSS 340
                +  +  ++ L     +    +         +  L   D+    +  EG   +   
Sbjct: 243 RPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDH 302

Query: 341 IARLCYLKEFDLSGNNLTGSLPEILQ 366
           + ++ +LK  ++  N L+  + + LQ
Sbjct: 303 VDKIKHLKFINMKYNYLSDEMKKELQ 328

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis} Length = 362

 Score = 43.0 bits (100), Expect = 4e-04
 Identities = 17/120 (14%), Positives = 41/120 (34%), Gaps = 19/120 (15%)

Query: 346 YLKEFDLSGNNLTGSLPEILQGTDLCVSSNSPLPSLISMRLGNNHLKGKLPEWLSQ---L 402
           Y+   D   +        +              P+L  + + +   +  + E   +   L
Sbjct: 227 YVGVEDYGFDGDMNVFRPLFSKD--------RFPNLKWLGIVDAEEQNVVVEMFLESDIL 278

Query: 403 ENLVELTLSYNLLQG----PIPASLGNLKNLTKLNLPGNQLNGT----LPETLGSLPELS 454
             L  + +S  +L       +   +  +K+L  +N+  N L+      L ++L    ++S
Sbjct: 279 PQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLSDEMKKELQKSLPMKIDVS 338

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri} Length = 177

 Score = 47.3 bits (113), Expect = 4e-06
 Identities = 31/127 (24%), Positives = 49/127 (38%), Gaps = 29/127 (22%)

Query: 669 KVLDLSYSSLSGVIPASLGQLTRLQSLHLNNNKLTGNLPSS-FQNLTSLETLDLGNNRFS 727
             L+L  + L  +      +LT+L  L L+ N++  +LP   F  LT L  L L  N+  
Sbjct: 31  TRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQ-SLPDGVFDKLTKLTILYLHENKLQ 89

Query: 728 GNIPSLLGNGFVGLRILSLRSNAFSGEIPSKLSNLSSLQVLDLAENNLTGSIPGSVGD-L 786
                            SL +  F          L+ L+ L L  N L  S+P  + D L
Sbjct: 90  -----------------SLPNGVFD--------KLTQLKELALDTNQLK-SVPDGIFDRL 123

Query: 787 KAMAHVQ 793
            ++  + 
Sbjct: 124 TSLQKIW 130

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri} Length = 177

 Score = 46.1 bits (110), Expect = 1e-05
 Identities = 27/80 (33%), Positives = 43/80 (53%), Gaps = 3/80 (3%)

Query: 408 LTLSYNLLQGPIPASLGNLKNLTKLNLPGNQLNGTLPETL-GSLPELSVLDVSSNSLTGI 466
           L L  N LQ         L  LTKL+L  NQ+  +LP+ +   L +L++L +  N L  +
Sbjct: 33  LELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQ-SLPDGVFDKLTKLTILYLHENKLQSL 91

Query: 467 ISEIHFSRLSKLKFLGLSSN 486
            + + F +L++LK L L +N
Sbjct: 92  PNGV-FDKLTQLKELALDTN 110

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus} Length = 174

 Score = 43.8 bits (104), Expect = 5e-05
 Identities = 22/60 (36%), Positives = 33/60 (55%), Gaps = 2/60 (3%)

Query: 666 TFLKVLDLSYSSLSGVIPASLGQLTRLQSLHLNNNKLTGNLPSS-FQNLTSLETLDLGNN 724
           T  + L L+ + ++ + P     L  LQ L+ N+NKLT  +P+  F  LT L  LDL +N
Sbjct: 33  TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLT-AIPTGVFDKLTQLTQLDLNDN 91

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus} Length = 174

 Score = 41.5 bits (98), Expect = 3e-04
 Identities = 33/111 (29%), Positives = 48/111 (43%), Gaps = 20/111 (18%)

Query: 671 LDLSYSSLSGVIPASLGQLTRLQSLHLNNNKLTGNLPSSFQNLTSLETLDLGNNRFSGNI 730
           ++     L+ V PA  G  T  Q L LNNN++T   P  F +L +L+ L   +N+ +  I
Sbjct: 17  VNCQNIRLASV-PA--GIPTDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLT-AI 72

Query: 731 PSLLGNGFVGLRILSLRSN--------AFSGEIPSKLSNLSSLQVLDLAEN 773
           P+ + +    L  L L  N        AF         NL SL  + L  N
Sbjct: 73  PTGVFDKLTQLTQLDLNDNHLKSIPRGAF--------DNLKSLTHIYLYNN 115

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D Length = 170

 Score = 43.4 bits (103), Expect = 7e-05
 Identities = 23/60 (38%), Positives = 34/60 (56%), Gaps = 2/60 (3%)

Query: 666 TFLKVLDLSYSSLSGVIPASLGQLTRLQSLHLNNNKLTGNLPSS-FQNLTSLETLDLGNN 724
           T  +VL L  + ++ + P    +LT+L  L L+NN+LT  LP+  F  LT L  L L +N
Sbjct: 30  TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLT-VLPAGVFDKLTQLTQLSLNDN 88

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D Length = 170

 Score = 43.0 bits (102), Expect = 9e-05
 Identities = 37/111 (33%), Positives = 50/111 (45%), Gaps = 20/111 (18%)

Query: 671 LDLSYSSLSGVIPASLGQLTRLQSLHLNNNKLTGNLPSSFQNLTSLETLDLGNNRFSGNI 730
           +D S  SL+ V P   G  T  Q L+L +N++T   P  F  LT L  LDL NN+ +  +
Sbjct: 14  VDCSGKSLASV-PT--GIPTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLT-VL 69

Query: 731 PSLLGNGFVGLRILSLRSN--------AFSGEIPSKLSNLSSLQVLDLAEN 773
           P+ + +    L  LSL  N        AF         NL SL  + L  N
Sbjct: 70  PAGVFDKLTQLTQLSLNDNQLKSIPRGAF--------DNLKSLTHIWLLNN 112

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D Length = 170

 Score = 40.3 bits (95), Expect = 7e-04
 Identities = 25/81 (30%), Positives = 35/81 (43%), Gaps = 3/81 (3%)

Query: 407 ELTLSYNLLQGPIPASLGNLKNLTKLNLPGNQLNGTLPETL-GSLPELSVLDVSSNSLTG 465
            L L  N +    P     L  LT+L+L  NQL   LP  +   L +L+ L ++ N L  
Sbjct: 34  VLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLT-VLPAGVFDKLTQLTQLSLNDNQLKS 92

Query: 466 IISEIHFSRLSKLKFLGLSSN 486
           I     F  L  L  + L +N
Sbjct: 93  IPRGA-FDNLKSLTHIWLLNN 112

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A* Length = 130

 Score = 40.2 bits (94), Expect = 5e-04
 Identities = 16/52 (30%), Positives = 20/52 (38%), Gaps = 6/52 (11%)

Query: 673 LSYSSLSGVIPASLGQLTRLQSLHLNNNKLTGNLPSSFQNLTSLETLDLGNN 724
           L+++SL    P           L L  N LT   P     L +L T  LG N
Sbjct: 20  LTWASLPTAFPVDT------TELVLTGNNLTALPPGLLDALPALRTAHLGAN 65

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	1009
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	100.0
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	100.0
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	100.0
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	100.0
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	100.0
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	100.0
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	100.0
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	100.0
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	100.0
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	100.0
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	100.0
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	100.0
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	100.0
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	100.0
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	100.0
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	100.0
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	100.0
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	100.0
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	100.0
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	100.0
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	100.0
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	100.0
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	100.0
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	100.0
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	100.0
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	100.0
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	100.0
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	100.0
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	100.0
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	100.0
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	100.0
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	100.0
1o6v_A	466	Internalin A; bacterial infection, extracellular r	100.0
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	100.0
1o6v_A	466	Internalin A; bacterial infection, extracellular r	100.0
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	100.0
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	100.0
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	100.0
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	99.97
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	99.97
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	99.97
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	99.97
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	99.97
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	99.97
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	99.97
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	99.97
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	99.96
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	99.96
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	99.96
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	99.96
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	99.95
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	99.95
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	99.95
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	99.95
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	99.95
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	99.95
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	99.95
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	99.95
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	99.95
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	99.95
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	99.94
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	99.94
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	99.94
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	99.94
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	99.94
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	99.93
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	99.93
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	99.93
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	99.93
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	99.92
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	99.92
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	99.92
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	99.91
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	99.91
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	99.91
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	99.9
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	99.9
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	99.89
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	99.89
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	99.89
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	99.89
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	99.88
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	99.88
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	99.87
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	99.87
3m19_A	251	Variable lymphocyte receptor A diversity region; a	99.87
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	99.87
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	99.87
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	99.86
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	99.86
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	99.85
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	99.85
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	99.85
3m19_A	251	Variable lymphocyte receptor A diversity region; a	99.84
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	99.82
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	99.81
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	99.81
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	99.81
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	99.81
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	99.8
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	99.8
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	99.77
3e6j_A	229	Variable lymphocyte receptor diversity region; var	99.75
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	99.75
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	99.74
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	99.74
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	99.74
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	99.74
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	99.73
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	99.73
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	99.72
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.72
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	99.71
3e6j_A	229	Variable lymphocyte receptor diversity region; var	99.7
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	99.7
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.69
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	99.69
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	99.69
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	99.68
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	99.68
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	99.68
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	99.67
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	99.63
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	99.62
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	99.61
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	99.59
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	99.59
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.58
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.58
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.58
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	99.55
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	99.55
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.54
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	99.49
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	99.48
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	99.46
4fs7_A	394	Uncharacterized protein; leucine-rich repeats, pro	99.46
4fs7_A	394	Uncharacterized protein; leucine-rich repeats, pro	99.46
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	99.45
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	99.44
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	99.43
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	99.4
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	99.37
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	99.34
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	99.27
4gt6_A	394	Cell surface protein; leucine rich repeats, putati	99.23
4gt6_A	394	Cell surface protein; leucine rich repeats, putati	99.23
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	99.16
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	99.13
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	99.1
4h09_A	379	Hypothetical leucine rich repeat protein; two LRR_	98.97
4h09_A	379	Hypothetical leucine rich repeat protein; two LRR_	98.86
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	98.73
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	98.69
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	98.29
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	98.29
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	98.27
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	98.23
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	97.74
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	97.55
1pgv_A	197	TMD-1, tropomodulin TMD-1; structural genomics, PS	96.84
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	96.76
1pgv_A	197	TMD-1, tropomodulin TMD-1; structural genomics, PS	96.76
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	96.4

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=100.00  E-value=1.2e-91  Score=866.58  Aligned_cols=734  Identities=30%  Similarity=0.421  Sum_probs=516.6

Q ss_pred             CCCCCHHHHHHHHHhhhcCCCCCCCccCCC-CCCCCCccceeecCCCCcEEEEecCCCC--C----CCCCCCCCCcCCEE
Q 036375           29 FSNCSENDLDALIDFKNGLEDPESRLASWK-GSNCCQWHGISCDDDTGAIVAINLGNPY--H----VVNSDSSGSLLEYL  101 (1009)
Q Consensus        29 ~~~~~~~~~~~ll~~k~~~~~~~~~~~~W~-~~~~c~w~gv~c~~~~~~v~~l~l~~~~--g----i~~~l~~l~~L~~L  101 (1009)
                      ++.+.++|++||++||+++.||. .+++|+ +++||.|+||+|+  +|||++|+|++..  |    +|++++++++|+++
T Consensus         6 ~~~~~~~~~~all~~k~~~~~~~-~l~~W~~~~~~C~w~gv~C~--~~~v~~L~L~~~~l~g~~~~l~~~l~~L~~L~~l   82 (768)
T 3rgz_A            6 PSQSLYREIHQLISFKDVLPDKN-LLPDWSSNKNPCTFDGVTCR--DDKVTSIDLSSKPLNVGFSAVSSSLLSLTGLESL   82 (768)
T ss_dssp             --CCHHHHHHHHHHHHTTCSCTT-SSTTCCTTSCGGGSTTEEEE--TTEEEEEECTTSCCCEEHHHHHHHTTTCTTCCEE
T ss_pred             cccCCHHHHHHHHHHHhhCCCcc-cccCCCCCCCCcCCcceEEC--CCcEEEEECCCCCcCCccCccChhHhccCccccc
Confidence            34567899999999999999988 899997 6899999999998  6999999999875  3    78899999999999


Q ss_pred             eCCCCCCCCCCCCcccCCCCCCceeecccCCCCccCCC--CCCCCCCCCeeeCCCccccccCCCcccccCCCCCCeEEcC
Q 036375          102 DLSFNTFNDIPIPEFLGSLENLQYLNLSEAGFTGVVPS--SLGNLHRLQYFDVSAELFALSADSLDWLTGLVSLKHLAMN  179 (1009)
Q Consensus       102 dLs~~~~~~~~lp~~i~~l~~L~~L~Ls~~~~~~~lp~--~l~~L~~L~~L~Ls~~~~~~~~~~~~~l~~l~~L~~L~l~  179 (1009)
                      +++.+.+..  +|+.++++++|++|+|++|.+.+.+|.  .++++++|++|++++|.+... .....+.++++|++|+++
T Consensus        83 ~~~~~~~~~--l~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~-~~~~~~~~l~~L~~L~Ls  159 (768)
T 3rgz_A           83 FLSNSHING--SVSGFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFP-GKVSGGLKLNSLEVLDLS  159 (768)
T ss_dssp             ECTTSCEEE--CCCCCCCCTTCCEEECCSSEEEEEGGGGGGGGGCTTCCEEECCSSEEECC-SSCCSCCCCTTCSEEECC
T ss_pred             CCcCCCcCC--CchhhccCCCCCEEECCCCcCCCcCCChHHHhCCCCCCEEECcCCccCCc-CCHHHhccCCCCCEEECC
Confidence            999998754  778999999999999999999999998  999999999999999965321 112223678899999999


Q ss_pred             CccCCCCcchhhhhhcCCCCccEEEcCCCcCCCCCCCCCCCCCCCCcEEECCCCCCCCCchhhhhcCCCCcEEEccCCcC
Q 036375          180 RVDLSLVGSEWLGILKNLPNLTELHLSVCGLTGSITSITPVNLTSPAVLDLSLNHFNSLFPNWLVNISTLVYVDLSDCDL  259 (1009)
Q Consensus       180 ~~~l~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~L~~n~~  259 (1009)
                      +|.+++........+.++++|++|++++|.+.+.++.   ..+++|++|++++|.+.+.+|. ++++++|++|++++|.+
T Consensus       160 ~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~---~~l~~L~~L~Ls~n~l~~~~~~-l~~l~~L~~L~Ls~n~l  235 (768)
T 3rgz_A          160 ANSISGANVVGWVLSDGCGELKHLAISGNKISGDVDV---SRCVNLEFLDVSSNNFSTGIPF-LGDCSALQHLDISGNKL  235 (768)
T ss_dssp             SSCCEEETHHHHHHTTCCTTCCEEECCSSEEESCCBC---TTCTTCCEEECCSSCCCSCCCB-CTTCCSCCEEECCSSCC
T ss_pred             CCccCCcCChhhhhhccCCCCCEEECCCCcccccCCc---ccCCcCCEEECcCCcCCCCCcc-cccCCCCCEEECcCCcC
Confidence            9988774322222378889999999999988876654   6788888888888888887776 88888888888888888


Q ss_pred             cccCCcccCCCCCCCEEEcCCCCCCCCcccccccCCCCCccEEEcccccccccCCccccCC-CCCCEEEccCCcccccCc
Q 036375          260 YGRIPIGFGELPNLQYLSLAGNNNLSGSCSQLFRGSWKKIQILNFASNKLHGKLPSSVANM-TSLTNFDLFDKKVEGGIP  338 (1009)
Q Consensus       260 ~~~~p~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~l~~l-~~L~~L~l~~n~~~~~~~  338 (1009)
                      .+.+|..++++++|++|++++|..  .+..+..  .+++|++|++++|.+.+.+|..+... ++|++|++++|.+.+.+|
T Consensus       236 ~~~~~~~l~~l~~L~~L~Ls~n~l--~~~~~~~--~l~~L~~L~L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~l~~~~p  311 (768)
T 3rgz_A          236 SGDFSRAISTCTELKLLNISSNQF--VGPIPPL--PLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVP  311 (768)
T ss_dssp             CSCHHHHTTTCSSCCEEECCSSCC--EESCCCC--CCTTCCEEECCSSEEEESCCCCSCTTCTTCSEEECCSSEEEECCC
T ss_pred             CCcccHHHhcCCCCCEEECCCCcc--cCccCcc--ccCCCCEEECcCCccCCccCHHHHhhcCcCCEEECcCCcCCCccc
Confidence            888888888888888888888743  3333332  56666666666666666666666553 666666666666666666


Q ss_pred             hhhhcccCCCEEEcCCCcCCCCCCccccccccccCCCCCCCCCcEEECcCCcCcccCChhhcCCCCCCEEeCcCCccccc
Q 036375          339 SSIARLCYLKEFDLSGNNLTGSLPEILQGTDLCVSSNSPLPSLISMRLGNNHLKGKLPEWLSQLENLVELTLSYNLLQGP  418 (1009)
Q Consensus       339 ~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~  418 (1009)
                      ..++++++|++|++++|.+++.+|..                                 .+..+++|++|++++|.+++.
T Consensus       312 ~~~~~l~~L~~L~L~~n~l~~~ip~~---------------------------------~l~~l~~L~~L~Ls~n~l~~~  358 (768)
T 3rgz_A          312 PFFGSCSLLESLALSSNNFSGELPMD---------------------------------TLLKMRGLKVLDLSFNEFSGE  358 (768)
T ss_dssp             GGGGGCTTCCEEECCSSEEEEECCHH---------------------------------HHTTCTTCCEEECCSSEEEEC
T ss_pred             hHHhcCCCccEEECCCCcccCcCCHH---------------------------------HHhcCCCCCEEeCcCCccCcc
Confidence            66665555555555555554444432                                 144555555555555555555


Q ss_pred             CCCCCCCCC-CCcEEeCCCCcCCCCCCcccCC--CCCCCEEEccCcccccccchhhhccCCCCcEEeCCCCcccccCCCC
Q 036375          419 IPASLGNLK-NLTKLNLPGNQLNGTLPETLGS--LPELSVLDVSSNSLTGIISEIHFSRLSKLKFLGLSSNSFILNVSSS  495 (1009)
Q Consensus       419 ~p~~l~~l~-~L~~L~L~~n~l~~~~p~~l~~--l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~  495 (1009)
                      +|..+.+++ +|++|++++|.+++.+|..+..  +++|++|++++|.+++.++. .+..+++|++|++++|         
T Consensus       359 ~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~-~l~~l~~L~~L~Ls~N---------  428 (768)
T 3rgz_A          359 LPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPP-TLSNCSELVSLHLSFN---------  428 (768)
T ss_dssp             CCTTHHHHTTTCSEEECCSSEEEEECCTTTTCSTTCCCCEEECCSSEEEEECCG-GGGGCTTCCEEECCSS---------
T ss_pred             ccHHHHhhhcCCcEEEccCCCcCCCcChhhhhcccCCccEEECCCCccccccCH-HHhcCCCCCEEECcCC---------
Confidence            555555544 5555555555555555544444  55566666666665544433 1333333333333222         


Q ss_pred             CCCCccccEEecccCcCCCCCCcccccCCCccEEEccCCcccCCCCchhhhccCcccEEEeccccccccCCCCCCCCCcC
Q 036375          496 WIPPFQVQSLNMRSCQLGPSFPSWLKTQQGVSFLDFSNASISGPIPNWFWDISSKLSLLNVSLNQLQGQLPNPLNIAPFA  575 (1009)
Q Consensus       496 ~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~ls~n~i~~~~p~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~~l~  575 (1009)
                                                             ++++.+|..+..                             
T Consensus       429 ---------------------------------------~l~~~~p~~l~~-----------------------------  440 (768)
T 3rgz_A          429 ---------------------------------------YLSGTIPSSLGS-----------------------------  440 (768)
T ss_dssp             ---------------------------------------EEESCCCGGGGG-----------------------------
T ss_pred             ---------------------------------------cccCcccHHHhc-----------------------------
Confidence                                                   222222222211                             


Q ss_pred             eEeccCCCCCCCCCCCCCCccEEEccCCcCCCcCCchhhcCCCCccEEEccCCcccccCCcccccCCCCCeEEccCCcCC
Q 036375          576 DVDFRSNLLEGPIPLPIVEIELLDLSNNHFSGPIPQNISGSMPNLIFLSVSGNRLTGKIPGSIGEMQLLQVIDLSRNSIS  655 (1009)
Q Consensus       576 ~l~l~~n~l~~~~~~~~~~L~~L~Ls~n~l~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~  655 (1009)
                                      +++|+.|++++|.+.+.+|..+ ..+++|++|++++|++++.+|..+.++++|++|++++|+++
T Consensus       441 ----------------l~~L~~L~L~~n~l~~~~p~~~-~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~  503 (768)
T 3rgz_A          441 ----------------LSKLRDLKLWLNMLEGEIPQEL-MYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLT  503 (768)
T ss_dssp             ----------------CTTCCEEECCSSCCCSCCCGGG-GGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCC
T ss_pred             ----------------CCCCCEEECCCCcccCcCCHHH-cCCCCceEEEecCCcccCcCCHHHhcCCCCCEEEccCCccC
Confidence                            1223333333333333444322 34566666666666666666666666666666666666666


Q ss_pred             ccCcCcccCCCCCCEEECCCCcCcccCCccccCCCCCCEEEccCccccCCCchhhcCCCCCCEEECcCCcccccCchhhh
Q 036375          656 GSISSSIGNCTFLKVLDLSYSSLSGVIPASLGQLTRLQSLHLNNNKLTGNLPSSFQNLTSLETLDLGNNRFSGNIPSLLG  735 (1009)
Q Consensus       656 ~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~ip~~l~  735 (1009)
                      +.+|..++.+++|++|++++|++++.+|..++.+++|++|++++|+++|.+|..+..+..+..+++..+.-...++....
T Consensus       504 ~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~  583 (768)
T 3rgz_A          504 GEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGM  583 (768)
T ss_dssp             SCCCGGGGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEEESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSC
T ss_pred             CcCChHHhcCCCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCCccCCcCChHHhcccchhhhhccccccccccccccc
Confidence            66666666666666666666666666666666666666666666666666666665555544443332110000000000


Q ss_pred             hcCcCCcEEEccCCcccccCCcccCCCCCCCEEEccCCcCCCCCChhhhhhhhhhhccchhhhhhccccccceeeceEEE
Q 036375          736 NGFVGLRILSLRSNAFSGEIPSKLSNLSSLQVLDLAENNLTGSIPGSVGDLKAMAHVQNIVKYLLFGRYRGIYYEENLVI  815 (1009)
Q Consensus       736 ~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~  815 (1009)
                      ..........   -.+.+..+..+..++.++.++++.|.++|.+|..++.++.|                          
T Consensus       584 ~~~~~~~~~~---~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L--------------------------  634 (768)
T 3rgz_A          584 KKECHGAGNL---LEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSM--------------------------  634 (768)
T ss_dssp             CTTCCSSEEE---EECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCC--------------------------
T ss_pred             cccccccccc---cccccccchhhhccccccccccccceecccCchhhhccccc--------------------------
Confidence            0000000000   02345566667777778888888899998888888777766                          


Q ss_pred             eecCCCCCCCCceeEEEccCCccCCCCCccccCcCCCCeEEccCCcccccCCCCccCCCCCCEEeCCCCcCCCCCccccc
Q 036375          816 NTKGSSKDTPRLFHFIDLSGNNLHGDFPTQLTKLVGLVVLNLSRNHIGGQIPENISGLHQLASLDLSSNNLSGGIPSSLS  895 (1009)
Q Consensus       816 ~~~~~~~~~~~~l~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~l~  895 (1009)
                                   +.||||+|+++|.+|.+++++++|+.|+|++|+++|.||+.|+++++|++||||+|+++|.||..++
T Consensus       635 -------------~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~  701 (768)
T 3rgz_A          635 -------------MFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMS  701 (768)
T ss_dssp             -------------CEEECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCCGGGG
T ss_pred             -------------cEEECcCCcccccCCHHHhccccCCEEeCcCCccCCCCChHHhCCCCCCEEECCCCcccCcCChHHh
Confidence                         8899999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCCeEeCCCCcceecCCCCCCCCcccCCcCCCCCCCCCCCCCCCCCCCC
Q 036375          896 SLSFLGYINLSRNQLSGKIPFEGHMTTFDASSFAGNPGLCGDPLPVKCQDDE  947 (1009)
Q Consensus       896 ~l~~L~~L~ls~N~l~g~ip~~~~~~~~~~~~~~~n~~lc~~~~~~~c~~~~  947 (1009)
                      ++++|++||+|+|+|+|+||.++++.+++..+|.|||++||.|+. .|....
T Consensus       702 ~l~~L~~L~ls~N~l~g~iP~~~~~~~~~~~~~~gN~~Lcg~~l~-~C~~~~  752 (768)
T 3rgz_A          702 ALTMLTEIDLSNNNLSGPIPEMGQFETFPPAKFLNNPGLCGYPLP-RCDPSN  752 (768)
T ss_dssp             GCCCCSEEECCSSEEEEECCSSSSGGGSCGGGGCSCTEEESTTSC-CCCSCC
T ss_pred             CCCCCCEEECcCCcccccCCCchhhccCCHHHhcCCchhcCCCCc-CCCCCc
Confidence            999999999999999999999999999999999999999999987 896543

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=100.00  E-value=2.2e-71  Score=685.62  Aligned_cols=650  Identities=29%  Similarity=0.426  Sum_probs=411.0

Q ss_pred             CCcc-ceeecCCCCcEEEEecCCCCCCCCCCCCCCcCCEEeCCCCCCCCCC---CCcccCCCCCCceeecccCCCCccCC
Q 036375           63 CQWH-GISCDDDTGAIVAINLGNPYHVVNSDSSGSLLEYLDLSFNTFNDIP---IPEFLGSLENLQYLNLSEAGFTGVVP  138 (1009)
Q Consensus        63 c~w~-gv~c~~~~~~v~~l~l~~~~gi~~~l~~l~~L~~LdLs~~~~~~~~---lp~~i~~l~~L~~L~Ls~~~~~~~lp  138 (1009)
                      -.|. +..|+.|.|-...   .            .+++.|||+++.+.+ .   +|+.++.+++|+.++++.+.+. .+|
T Consensus        31 ~~W~~~~~~C~w~gv~C~---~------------~~v~~L~L~~~~l~g-~~~~l~~~l~~L~~L~~l~~~~~~~~-~l~   93 (768)
T 3rgz_A           31 PDWSSNKNPCTFDGVTCR---D------------DKVTSIDLSSKPLNV-GFSAVSSSLLSLTGLESLFLSNSHIN-GSV   93 (768)
T ss_dssp             TTCCTTSCGGGSTTEEEE---T------------TEEEEEECTTSCCCE-EHHHHHHHTTTCTTCCEEECTTSCEE-ECC
T ss_pred             cCCCCCCCCcCCcceEEC---C------------CcEEEEECCCCCcCC-ccCccChhHhccCcccccCCcCCCcC-CCc
Confidence            4695 6778888764432   1            378999999999988 6   7888999999999999888765 467


Q ss_pred             CCCCCCCCCCeeeCCCccccccCCCcccccCCCCCCeEEcCCccCCCCcchhhh--hhcCCCCccEEEcCCCcCCCCCCC
Q 036375          139 SSLGNLHRLQYFDVSAELFALSADSLDWLTGLVSLKHLAMNRVDLSLVGSEWLG--ILKNLPNLTELHLSVCGLTGSITS  216 (1009)
Q Consensus       139 ~~l~~L~~L~~L~Ls~~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~--~l~~l~~L~~L~L~~n~l~~~~~~  216 (1009)
                      +.++++++|++||+++|.+.                          +   .++.  .++++++|++|+|++|.+.+.++.
T Consensus        94 ~~~~~l~~L~~L~Ls~n~l~--------------------------~---~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~  144 (768)
T 3rgz_A           94 SGFKCSASLTSLDLSRNSLS--------------------------G---PVTTLTSLGSCSGLKFLNVSSNTLDFPGKV  144 (768)
T ss_dssp             CCCCCCTTCCEEECCSSEEE--------------------------E---EGGGGGGGGGCTTCCEEECCSSEEECCSSC
T ss_pred             hhhccCCCCCEEECCCCcCC--------------------------C---cCCChHHHhCCCCCCEEECcCCccCCcCCH
Confidence            88999999999999998532                          1   1444  788899999999999999888887


Q ss_pred             CCCCCCCCCcEEECCCCCCCCCchhh---hhcCCCCcEEEccCCcCcccCCcccCCCCCCCEEEcCCCCCCCCccccccc
Q 036375          217 ITPVNLTSPAVLDLSLNHFNSLFPNW---LVNISTLVYVDLSDCDLYGRIPIGFGELPNLQYLSLAGNNNLSGSCSQLFR  293 (1009)
Q Consensus       217 ~~~~~l~~L~~L~L~~n~~~~~~p~~---l~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~L~~n~~~~~~~~~~~~  293 (1009)
                      ....++++|++|++++|.+++..|..   +.++++|++|++++|.+.+.+|  +..+++|++|++++|.           
T Consensus       145 ~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~Ls~n~-----------  211 (768)
T 3rgz_A          145 SGGLKLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGDVD--VSRCVNLEFLDVSSNN-----------  211 (768)
T ss_dssp             CSCCCCTTCSEEECCSSCCEEETHHHHHHTTCCTTCCEEECCSSEEESCCB--CTTCTTCCEEECCSSC-----------
T ss_pred             HHhccCCCCCEEECCCCccCCcCChhhhhhccCCCCCEEECCCCcccccCC--cccCCcCCEEECcCCc-----------
Confidence            76678889999999999998888876   7788888888888888877665  3667777777776663           


Q ss_pred             CCCCCccEEEcccccccccCCccccCCCCCCEEEccCCcccccCchhhhcccCCCEEEcCCCcCCCCCCccccccccccC
Q 036375          294 GSWKKIQILNFASNKLHGKLPSSVANMTSLTNFDLFDKKVEGGIPSSIARLCYLKEFDLSGNNLTGSLPEILQGTDLCVS  373 (1009)
Q Consensus       294 ~~~~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~  373 (1009)
                                     +.+.+|. ++++++|++|++++|.+.+.+|..++++++|++|++++|.+++.+|..         
T Consensus       212 ---------------l~~~~~~-l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~---------  266 (768)
T 3rgz_A          212 ---------------FSTGIPF-LGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPL---------  266 (768)
T ss_dssp             ---------------CCSCCCB-CTTCCSCCEEECCSSCCCSCHHHHTTTCSSCCEEECCSSCCEESCCCC---------
T ss_pred             ---------------CCCCCcc-cccCCCCCEEECcCCcCCCcccHHHhcCCCCCEEECCCCcccCccCcc---------
Confidence                           3444444 666666666666666666666666666666666666666666555543         


Q ss_pred             CCCCCCCCcEEECcCCcCcccCChhhcCC-CCCCEEeCcCCcccccCCCCCCCCCCCcEEeCCCCcCCCCCCcc-cCCCC
Q 036375          374 SNSPLPSLISMRLGNNHLKGKLPEWLSQL-ENLVELTLSYNLLQGPIPASLGNLKNLTKLNLPGNQLNGTLPET-LGSLP  451 (1009)
Q Consensus       374 ~~~~l~~L~~L~L~~n~l~~~~~~~l~~l-~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~-l~~l~  451 (1009)
                         .+++|++|++++|.+++.+|..+... ++|++|++++|.+++.+|..|+++++|++|++++|.+++.+|.. +.+++
T Consensus       267 ---~l~~L~~L~L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~ip~~~l~~l~  343 (768)
T 3rgz_A          267 ---PLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMR  343 (768)
T ss_dssp             ---CCTTCCEEECCSSEEEESCCCCSCTTCTTCSEEECCSSEEEECCCGGGGGCTTCCEEECCSSEEEEECCHHHHTTCT
T ss_pred             ---ccCCCCEEECcCCccCCccCHHHHhhcCcCCEEECcCCcCCCccchHHhcCCCccEEECCCCcccCcCCHHHHhcCC
Confidence               36677777777777777777766554 77888888888877777777788888888888888777667755 77788


Q ss_pred             CCCEEEccCcccccccchhhhccCC-CCcEEeCCCCcccccCCCCCCCCccccEEecccCcCCCCCCcccccCCCccEEE
Q 036375          452 ELSVLDVSSNSLTGIISEIHFSRLS-KLKFLGLSSNSFILNVSSSWIPPFQVQSLNMRSCQLGPSFPSWLKTQQGVSFLD  530 (1009)
Q Consensus       452 ~L~~L~Ls~n~l~~~~~~~~~~~l~-~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~  530 (1009)
                      +|++|++++|.+++.++.. +..++ +|++|++++|.+                                          
T Consensus       344 ~L~~L~Ls~n~l~~~~p~~-l~~l~~~L~~L~Ls~N~l------------------------------------------  380 (768)
T 3rgz_A          344 GLKVLDLSFNEFSGELPES-LTNLSASLLTLDLSSNNF------------------------------------------  380 (768)
T ss_dssp             TCCEEECCSSEEEECCCTT-HHHHTTTCSEEECCSSEE------------------------------------------
T ss_pred             CCCEEeCcCCccCccccHH-HHhhhcCCcEEEccCCCc------------------------------------------
Confidence            8888888888777665543 34443 555555544433                                          


Q ss_pred             ccCCcccCCCCchhhhccCcccEEEeccccccccCCCCCCCCCcCeEeccCCCCCCCCCCCCCCccEEEccCCcCCCcCC
Q 036375          531 FSNASISGPIPNWFWDISSKLSLLNVSLNQLQGQLPNPLNIAPFADVDFRSNLLEGPIPLPIVEIELLDLSNNHFSGPIP  610 (1009)
Q Consensus       531 ls~n~i~~~~p~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~~l~~l~l~~n~l~~~~~~~~~~L~~L~Ls~n~l~~~ip  610 (1009)
                            ++.+|..+...                                           .+++|++|++++|.+++.+|
T Consensus       381 ------~~~~~~~~~~~-------------------------------------------~~~~L~~L~L~~n~l~~~~p  411 (768)
T 3rgz_A          381 ------SGPILPNLCQN-------------------------------------------PKNTLQELYLQNNGFTGKIP  411 (768)
T ss_dssp             ------EEECCTTTTCS-------------------------------------------TTCCCCEEECCSSEEEEECC
T ss_pred             ------CCCcChhhhhc-------------------------------------------ccCCccEEECCCCccccccC
Confidence                  32222222100                                           00112222222222222222


Q ss_pred             chhhcCCCCccEEEccCCcccccCCcccccCCCCCeEEccCCcCCccCcCcccCCCCCCEEECCCCcCcccCCccccCCC
Q 036375          611 QNISGSMPNLIFLSVSGNRLTGKIPGSIGEMQLLQVIDLSRNSISGSISSSIGNCTFLKVLDLSYSSLSGVIPASLGQLT  690 (1009)
Q Consensus       611 ~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~  690 (1009)
                      ..+ ..+++|++|++++|++++.+|..++++++|++|++++|++++.+|..+..+++|++|++++|++++.+|..+..++
T Consensus       412 ~~l-~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~  490 (768)
T 3rgz_A          412 PTL-SNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCT  490 (768)
T ss_dssp             GGG-GGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCT
T ss_pred             HHH-hcCCCCCEEECcCCcccCcccHHHhcCCCCCEEECCCCcccCcCCHHHcCCCCceEEEecCCcccCcCCHHHhcCC
Confidence            211 2233333333333333333333333333333333333333333333333333333333333333333333333333


Q ss_pred             CCCEEEccCccccCCCchhhcCCCCCCEEECcCCcccccCchhhhhcCcCCcEEEccCCcccccCCcccCCCCCCCEEEc
Q 036375          691 RLQSLHLNNNKLTGNLPSSFQNLTSLETLDLGNNRFSGNIPSLLGNGFVGLRILSLRSNAFSGEIPSKLSNLSSLQVLDL  770 (1009)
Q Consensus       691 ~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~ip~~l~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L  770 (1009)
                      +|++|++++|++++.+|..+..+++|++|++++|+++|.+|..+.. +++|+.|++++|+++|.+|..+.....+..+++
T Consensus       491 ~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~-l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~  569 (768)
T 3rgz_A          491 NLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGD-CRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANF  569 (768)
T ss_dssp             TCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGGGG-CTTCCEEECCSSEEESBCCGGGGTTTTCBCCST
T ss_pred             CCCEEEccCCccCCcCChHHhcCCCCCEEECCCCcccCcCCHHHcC-CCCCCEEECCCCccCCcCChHHhcccchhhhhc
Confidence            3333333333333333333333333333333333333333333331 333333333333333333333333222222211


Q ss_pred             cC---------C-------------cCCCCCChhhhhhhhhhhccchhhhhhccccccceeeceEEEeecCCCCCCCCce
Q 036375          771 AE---------N-------------NLTGSIPGSVGDLKAMAHVQNIVKYLLFGRYRGIYYEENLVINTKGSSKDTPRLF  828 (1009)
Q Consensus       771 s~---------N-------------~l~~~~p~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  828 (1009)
                      ..         +             .+.|..|..+..+..+                                       
T Consensus       570 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~---------------------------------------  610 (768)
T 3rgz_A          570 IAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTR---------------------------------------  610 (768)
T ss_dssp             TCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGT---------------------------------------
T ss_pred             cccccccccccccccccccccccccccccccchhhhccccc---------------------------------------
Confidence            11         0             1222233333222222                                       


Q ss_pred             eEEEccCCccCCCCCccccCcCCCCeEEccCCcccccCCCCccCCCCCCEEeCCCCcCCCCCcccccCCCCCCeEeCCCC
Q 036375          829 HFIDLSGNNLHGDFPTQLTKLVGLVVLNLSRNHIGGQIPENISGLHQLASLDLSSNNLSGGIPSSLSSLSFLGYINLSRN  908 (1009)
Q Consensus       829 ~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~ls~N  908 (1009)
                      ..++++.|.++|.+|..++++++|+.|||++|+++|.+|..++++++|+.|||++|+++|.||..++++++|++||+|+|
T Consensus       611 ~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N  690 (768)
T 3rgz_A          611 NPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSN  690 (768)
T ss_dssp             CCSCTTSCEEEEECCCSCSSSBCCCEEECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSS
T ss_pred             cccccccceecccCchhhhccccccEEECcCCcccccCCHHHhccccCCEEeCcCCccCCCCChHHhCCCCCCEEECCCC
Confidence            55688999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cceecCCCC-CCCCcccCCcCCCCC
Q 036375          909 QLSGKIPFE-GHMTTFDASSFAGNP  932 (1009)
Q Consensus       909 ~l~g~ip~~-~~~~~~~~~~~~~n~  932 (1009)
                      +++|.||.. ..+..+....+.+|+
T Consensus       691 ~l~g~ip~~l~~l~~L~~L~ls~N~  715 (768)
T 3rgz_A          691 KLDGRIPQAMSALTMLTEIDLSNNN  715 (768)
T ss_dssp             CCEECCCGGGGGCCCCSEEECCSSE
T ss_pred             cccCcCChHHhCCCCCCEEECcCCc
Confidence            999999975 344555555666773

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=100.00  E-value=5.6e-58  Score=561.63  Aligned_cols=543  Identities=22%  Similarity=0.204  Sum_probs=310.7

Q ss_pred             hcCCCCccEEEcCCCcCCCCCCCCCCCCCCCCcEEECCCCCCCCCchhhhhcCCCCcEEEccCCcCcccCCcccCCCCCC
Q 036375          194 LKNLPNLTELHLSVCGLTGSITSITPVNLTSPAVLDLSLNHFNSLFPNWLVNISTLVYVDLSDCDLYGRIPIGFGELPNL  273 (1009)
Q Consensus       194 l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L  273 (1009)
                      ++++++|++|+|++|.+++ ++...+..+++|++|++++|.+.+..|..|+++++|++|++++|.+.+..|..++++++|
T Consensus        69 ~~~l~~L~~L~L~~n~l~~-l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L  147 (680)
T 1ziw_A           69 CQKLPMLKVLNLQHNELSQ-LSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENL  147 (680)
T ss_dssp             HHHCTTCCEEECCSSCCCC-CCTTTTTTCTTCSEEECCSSCCCCCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTC
T ss_pred             HhcccCcCEEECCCCccCc-cChhhhccCCCCCEEECCCCccCccChhHccccCCCCEEECCCCcccccCchhhcccccC
Confidence            3444444444444444442 232223556666666666666666656667777777777777777777666667777777


Q ss_pred             CEEEcCCCCCCCCcccccc--cCCCCCccEEEcccccccccCCccccCCCCCCEEEccCCcccccCchhhhcccCCCEEE
Q 036375          274 QYLSLAGNNNLSGSCSQLF--RGSWKKIQILNFASNKLHGKLPSSVANMTSLTNFDLFDKKVEGGIPSSIARLCYLKEFD  351 (1009)
Q Consensus       274 ~~L~L~~n~~~~~~~~~~~--~~~~~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~  351 (1009)
                      ++|++++|.+  .+..+..  ...+++|++|++++|.+.+..|..+..+++|+.|++.++.+.+.....+..        
T Consensus       148 ~~L~L~~n~l--~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~--------  217 (680)
T 1ziw_A          148 QELLLSNNKI--QALKSEELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCL--------  217 (680)
T ss_dssp             CEEECCSSCC--CCBCHHHHGGGTTCEESEEECTTCCCCCBCTTGGGGSSEECEEECTTCCCHHHHHHHHHH--------
T ss_pred             CEEEccCCcc--cccCHHHhhccccccccEEECCCCcccccChhhhhhhhhhhhhhccccccChhhHHHHHH--------
Confidence            7777777642  2222221  123345555555555555555555555566666666555544322211110        


Q ss_pred             cCCCcCCCCCCccccccccccCCCCCCCCCcEEECcCCcCcccCChhhcCCCC--CCEEeCcCCcccccCCCCCCCCCCC
Q 036375          352 LSGNNLTGSLPEILQGTDLCVSSNSPLPSLISMRLGNNHLKGKLPEWLSQLEN--LVELTLSYNLLQGPIPASLGNLKNL  429 (1009)
Q Consensus       352 l~~n~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~--L~~L~Ls~n~l~~~~p~~l~~l~~L  429 (1009)
                                  .+           ..++|++|++++|.+.+..|.++..++.  |++|++++|.+++..|..|+.+++|
T Consensus       218 ------------~l-----------~~~~L~~L~L~~n~l~~~~~~~~~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L  274 (680)
T 1ziw_A          218 ------------EL-----------ANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQL  274 (680)
T ss_dssp             ------------HH-----------TTSCCCEEECTTSCCCEECTTTTGGGGGSCCCEEECTTSCCCEECTTTTTTCTTC
T ss_pred             ------------Hh-----------hhccccEEEccCCcccccChhHhhccCcCCCCEEECCCCCcCccCcccccCcccc
Confidence                        00           1245666666666666666666665543  7777777777776666777777777


Q ss_pred             cEEeCCCCcCCCCCCcccCCCCCCCEEEccCcccccccchhhhccCCCCcEEeCCCCcccccCCCCCCCCccccEEeccc
Q 036375          430 TKLNLPGNQLNGTLPETLGSLPELSVLDVSSNSLTGIISEIHFSRLSKLKFLGLSSNSFILNVSSSWIPPFQVQSLNMRS  509 (1009)
Q Consensus       430 ~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~  509 (1009)
                      ++|++++|.+++..|..+..+++|++|++++|...+.++.   ..++.+                               
T Consensus       275 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~---~~lp~i-------------------------------  320 (680)
T 1ziw_A          275 EYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISL---ASLPKI-------------------------------  320 (680)
T ss_dssp             CEEECCSCCBSEECTTTTTTCTTCCEEECTTCBCCC---------CCEE-------------------------------
T ss_pred             cEeeCCCCccCccChhhhcCCCCccEEeccchhhhccccc---cccccc-------------------------------
Confidence            7777777777766677777777777777776654432211   000000                               


Q ss_pred             CcCCCCCCcccccCCCccEEEccCCcccCCCCchhhhccCcccEEEeccccccccCCCCCCCCCcCeEeccCCCCCCCCC
Q 036375          510 CQLGPSFPSWLKTQQGVSFLDFSNASISGPIPNWFWDISSKLSLLNVSLNQLQGQLPNPLNIAPFADVDFRSNLLEGPIP  589 (1009)
Q Consensus       510 ~~~~~~~~~~l~~~~~L~~L~ls~n~i~~~~p~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~~l~~l~l~~n~l~~~~~  589 (1009)
                            ....+..+++|++|++++|.+++..+..+. .+++|++|++++|.+.+.                         
T Consensus       321 ------~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~-~l~~L~~L~Ls~n~~~~~-------------------------  368 (680)
T 1ziw_A          321 ------DDFSFQWLKCLEHLNMEDNDIPGIKSNMFT-GLINLKYLSLSNSFTSLR-------------------------  368 (680)
T ss_dssp             ------CTTTTTTCTTCCEEECCSCCBCCCCTTTTT-TCTTCCEEECTTCBSCCC-------------------------
T ss_pred             ------ChhhcccCCCCCEEECCCCccCCCChhHhc-cccCCcEEECCCCchhhh-------------------------
Confidence                  000122233333333333333322222211 112222222222221100                         


Q ss_pred             CCCCCccEEEccCCcCCCcCCchhhcCCCCccEEEccCCcccccCCcccccCCCCCeEEccCCcCCccCcCcccCCCCCC
Q 036375          590 LPIVEIELLDLSNNHFSGPIPQNISGSMPNLIFLSVSGNRLTGKIPGSIGEMQLLQVIDLSRNSISGSISSSIGNCTFLK  669 (1009)
Q Consensus       590 ~~~~~L~~L~Ls~n~l~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~  669 (1009)
                                        .++...+..+                      ..++|+.|++++|++++..|..+..+++|+
T Consensus       369 ------------------~l~~~~f~~~----------------------~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~  408 (680)
T 1ziw_A          369 ------------------TLTNETFVSL----------------------AHSPLHILNLTKNKISKIESDAFSWLGHLE  408 (680)
T ss_dssp             ------------------EECTTTTGGG----------------------TTSCCCEEECTTSCCCEECTTTTTTCTTCC
T ss_pred             ------------------hcchhhhccc----------------------ccCcCceEECCCCCCCeEChhhhhCCCCCC
Confidence                              0111111100                      012444555555555444444455555555


Q ss_pred             EEECCCCcCcccCC-ccccCCCCCCEEEccCccccCCCchhhcCCCCCCEEECcCCccc--ccCchhhhhcCcCCcEEEc
Q 036375          670 VLDLSYSSLSGVIP-ASLGQLTRLQSLHLNNNKLTGNLPSSFQNLTSLETLDLGNNRFS--GNIPSLLGNGFVGLRILSL  746 (1009)
Q Consensus       670 ~L~Ls~N~l~~~~p-~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~--~~ip~~l~~~l~~L~~L~L  746 (1009)
                      +|++++|++++.+| ..|..+++|++|++++|++++..+..|..+++|++|++++|.+.  +.+|..+. .+++|+.|++
T Consensus       409 ~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~p~~~~-~l~~L~~L~L  487 (680)
T 1ziw_A          409 VLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQ-PLRNLTILDL  487 (680)
T ss_dssp             EEECCSSCCEEECCSGGGTTCTTCCEEECCSCSEEECCTTTTTTCTTCCEEECTTSCCBCTTCSSCTTT-TCTTCCEEEC
T ss_pred             EEeCCCCcCccccCcccccCcccccEEecCCCCcceeChhhhhcCcccccchhccccccccccCCcccc-cCCCCCEEEC
Confidence            55555555544333 34455555555555555555444555555555555555555543  34444444 3556666666


Q ss_pred             cCCcccccCCcccCCCCCCCEEEccCCcCCCCCCh--------hhhhhhhhhhccchhhhhhccccccceeeceEEEeec
Q 036375          747 RSNAFSGEIPSKLSNLSSLQVLDLAENNLTGSIPG--------SVGDLKAMAHVQNIVKYLLFGRYRGIYYEENLVINTK  818 (1009)
Q Consensus       747 ~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~--------~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  818 (1009)
                      ++|++++..|..+..+++|++|++++|++++..+.        .+.++++|                             
T Consensus       488 s~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L-----------------------------  538 (680)
T 1ziw_A          488 SNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHL-----------------------------  538 (680)
T ss_dssp             CSSCCCCCCTTTTTTCTTCCEEECCSSCCGGGGSTTSTTSCCCTTTTCTTC-----------------------------
T ss_pred             CCCCCCcCChhhhccccccCEEeCCCCCccccchhhccCCcchhhcCCCCC-----------------------------
Confidence            66666655555566666666666666666643221        23444444                             


Q ss_pred             CCCCCCCCceeEEEccCCccCCCCCccccCcCCCCeEEccCCcccccCCCCccCCCCCCEEeCCCCcCCCCCccccc-CC
Q 036375          819 GSSKDTPRLFHFIDLSGNNLHGDFPTQLTKLVGLVVLNLSRNHIGGQIPENISGLHQLASLDLSSNNLSGGIPSSLS-SL  897 (1009)
Q Consensus       819 ~~~~~~~~~l~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~l~-~l  897 (1009)
                                +.|+|++|+++...+..|.++++|+.|+|++|++++.++..|.++++|+.|+|++|++++..|..+. .+
T Consensus       539 ----------~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~  608 (680)
T 1ziw_A          539 ----------HILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVFGPAF  608 (680)
T ss_dssp             ----------CEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCCCBCCHHHHHHHH
T ss_pred             ----------CEEECCCCCCCCCCHHHcccccCcceeECCCCCCCcCCHhHhCCCCCCCEEECCCCcCCccChhHhcccc
Confidence                      7888888988855556789999999999999999988888899999999999999999999998887 78


Q ss_pred             CCCCeEeCCCCcceecCCC
Q 036375          898 SFLGYINLSRNQLSGKIPF  916 (1009)
Q Consensus       898 ~~L~~L~ls~N~l~g~ip~  916 (1009)
                      ++|+++++++|++.+..+.
T Consensus       609 ~~L~~l~l~~N~~~c~c~~  627 (680)
T 1ziw_A          609 RNLTELDMRFNPFDCTCES  627 (680)
T ss_dssp             TTCSEEECTTCCCCBCCCC
T ss_pred             cccCEEEccCCCcccCCcc
Confidence            9999999999999988764

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=100.00  E-value=2.2e-57  Score=556.37  Aligned_cols=578  Identities=22%  Similarity=0.236  Sum_probs=440.9

Q ss_pred             CCccEEEcCCCcCCCCCCCCCCCCCCCCcEEECCCCCCCCCchhhhhcCCCCcEEEccCCcCcccCCcccCCCCCCCEEE
Q 036375          198 PNLTELHLSVCGLTGSITSITPVNLTSPAVLDLSLNHFNSLFPNWLVNISTLVYVDLSDCDLYGRIPIGFGELPNLQYLS  277 (1009)
Q Consensus       198 ~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~  277 (1009)
                      +++++|++++|.+++..+.. +.++++|++|++++|.+++..|..|+++++|++|++++|.+.+..+..++++++|++|+
T Consensus        25 ~~l~~L~Ls~n~l~~~~~~~-~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~  103 (680)
T 1ziw_A           25 TNITVLNLTHNQLRRLPAAN-FTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELH  103 (680)
T ss_dssp             TTCSEEECCSSCCCCCCGGG-GGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEE
T ss_pred             CCCcEEECCCCCCCCcCHHH-HhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECCCCccCccChhhhccCCCCCEEE
Confidence            57778888887777544433 37778888888888888888788888888888888888887765555678888888888


Q ss_pred             cCCCCCCCCcccccccCCCCCccEEEcccccccccCCccccCCCCCCEEEccCCcccccCchhhh--cccCCCEEEcCCC
Q 036375          278 LAGNNNLSGSCSQLFRGSWKKIQILNFASNKLHGKLPSSVANMTSLTNFDLFDKKVEGGIPSSIA--RLCYLKEFDLSGN  355 (1009)
Q Consensus       278 L~~n~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~~~~~~~~~l~--~l~~L~~L~l~~n  355 (1009)
                      +++|.+  ....+..++.+++|++|++++|.+.+..|..++++++|++|++++|.+++..+..+.  .+++|++|++++|
T Consensus       104 L~~n~l--~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L~~n  181 (680)
T 1ziw_A          104 LMSNSI--QKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSN  181 (680)
T ss_dssp             CCSSCC--CCCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSCCCCBCHHHHGGGTTCEESEEECTTC
T ss_pred             CCCCcc--CccChhHccccCCCCEEECCCCcccccCchhhcccccCCEEEccCCcccccCHHHhhccccccccEEECCCC
Confidence            888743  344445667777888888888877777777777888888888888888776666554  3477888888888


Q ss_pred             cCCCCCCccccccccccCCCCCCCCCcEEECcCCcCcccCChhh---cCCCCCCEEeCcCCcccccCCCCCCCCCC--Cc
Q 036375          356 NLTGSLPEILQGTDLCVSSNSPLPSLISMRLGNNHLKGKLPEWL---SQLENLVELTLSYNLLQGPIPASLGNLKN--LT  430 (1009)
Q Consensus       356 ~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l---~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~--L~  430 (1009)
                      .+++..|..+.          .+++|+.+++.++.+.+.....+   ...++|++|++++|.+++..|.++..++.  |+
T Consensus       182 ~l~~~~~~~~~----------~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~l~~~~L~  251 (680)
T 1ziw_A          182 QIKEFSPGCFH----------AIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLT  251 (680)
T ss_dssp             CCCCBCTTGGG----------GSSEECEEECTTCCCHHHHHHHHHHHHTTSCCCEEECTTSCCCEECTTTTGGGGGSCCC
T ss_pred             cccccChhhhh----------hhhhhhhhhccccccChhhHHHHHHHhhhccccEEEccCCcccccChhHhhccCcCCCC
Confidence            77777776665          56777777777776653222211   13467778888887777777777776644  77


Q ss_pred             EEeCCCCcCCCCCCcccCCCCCCCEEEccCcccccccchhhhccCCCCcEEeCCCCcccccCCCCCCCCccccEEecccC
Q 036375          431 KLNLPGNQLNGTLPETLGSLPELSVLDVSSNSLTGIISEIHFSRLSKLKFLGLSSNSFILNVSSSWIPPFQVQSLNMRSC  510 (1009)
Q Consensus       431 ~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~~  510 (1009)
                      +|++++|.+++..|..+..+++|++|++++|.+++..+. .+..+++|++|++++|..                      
T Consensus       252 ~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~-~~~~l~~L~~L~L~~~~~----------------------  308 (680)
T 1ziw_A          252 MLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSH-SLHGLFNVRYLNLKRSFT----------------------  308 (680)
T ss_dssp             EEECTTSCCCEECTTTTTTCTTCCEEECCSCCBSEECTT-TTTTCTTCCEEECTTCBC----------------------
T ss_pred             EEECCCCCcCccCcccccCcccccEeeCCCCccCccChh-hhcCCCCccEEeccchhh----------------------
Confidence            777777777766666777777777777777777654443 355555555555544321                      


Q ss_pred             cCCCCCCcccccCCCccEEEccCCcccCCCCchhhhccCcccEEEeccccccccCCCCCCCCCcCeEeccCCCCCCCCCC
Q 036375          511 QLGPSFPSWLKTQQGVSFLDFSNASISGPIPNWFWDISSKLSLLNVSLNQLQGQLPNPLNIAPFADVDFRSNLLEGPIPL  590 (1009)
Q Consensus       511 ~~~~~~~~~l~~~~~L~~L~ls~n~i~~~~p~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~~l~~l~l~~n~l~~~~~~  590 (1009)
                                                .+.++..                    .+|                        
T Consensus       309 --------------------------~~~~~~~--------------------~lp------------------------  318 (680)
T 1ziw_A          309 --------------------------KQSISLA--------------------SLP------------------------  318 (680)
T ss_dssp             --------------------------CC--------------------------CC------------------------
T ss_pred             --------------------------hcccccc--------------------ccc------------------------
Confidence                                      1111000                    000                        


Q ss_pred             CCCCccEEEccCCcCCCcCCchhhcCCCCccEEEccCCcccccCCcccccCCCCCeEEccCCcCCcc--CcCcccCC--C
Q 036375          591 PIVEIELLDLSNNHFSGPIPQNISGSMPNLIFLSVSGNRLTGKIPGSIGEMQLLQVIDLSRNSISGS--ISSSIGNC--T  666 (1009)
Q Consensus       591 ~~~~L~~L~Ls~n~l~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~--~p~~l~~l--~  666 (1009)
                                       .++...+..+++|++|++++|++++..+..|.++++|++|++++|.+...  .+..+..+  +
T Consensus       319 -----------------~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~l~~~~f~~~~~~  381 (680)
T 1ziw_A          319 -----------------KIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHS  381 (680)
T ss_dssp             -----------------EECTTTTTTCTTCCEEECCSCCBCCCCTTTTTTCTTCCEEECTTCBSCCCEECTTTTGGGTTS
T ss_pred             -----------------ccChhhcccCCCCCEEECCCCccCCCChhHhccccCCcEEECCCCchhhhhcchhhhcccccC
Confidence                             11222345677888888888888888888888888999999998875432  22334433  5


Q ss_pred             CCCEEECCCCcCcccCCccccCCCCCCEEEccCccccCCCc-hhhcCCCCCCEEECcCCcccccCchhhhhcCcCCcEEE
Q 036375          667 FLKVLDLSYSSLSGVIPASLGQLTRLQSLHLNNNKLTGNLP-SSFQNLTSLETLDLGNNRFSGNIPSLLGNGFVGLRILS  745 (1009)
Q Consensus       667 ~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p-~~~~~l~~L~~L~L~~N~l~~~ip~~l~~~l~~L~~L~  745 (1009)
                      +|+.|++++|++++..|.+|..+++|++|++++|++++.+| ..|.++++|++|++++|++.+..+..+. .+++|+.|+
T Consensus       382 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~-~~~~L~~L~  460 (680)
T 1ziw_A          382 PLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFA-LVPSLQRLM  460 (680)
T ss_dssp             CCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCEEECCSGGGTTCTTCCEEECCSCSEEECCTTTTT-TCTTCCEEE
T ss_pred             cCceEECCCCCCCeEChhhhhCCCCCCEEeCCCCcCccccCcccccCcccccEEecCCCCcceeChhhhh-cCcccccch
Confidence            89999999999999999999999999999999999987666 7899999999999999999866666665 599999999


Q ss_pred             ccCCccc--ccCCcccCCCCCCCEEEccCCcCCCCCChhhhhhhhhhhccchhhhhhccccccceeeceEEEeecCCCCC
Q 036375          746 LRSNAFS--GEIPSKLSNLSSLQVLDLAENNLTGSIPGSVGDLKAMAHVQNIVKYLLFGRYRGIYYEENLVINTKGSSKD  823 (1009)
Q Consensus       746 L~~N~l~--~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  823 (1009)
                      +++|.+.  +.+|..+..+++|++|++++|++++..|..+..+++|                                  
T Consensus       461 l~~n~l~~~~~~p~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L----------------------------------  506 (680)
T 1ziw_A          461 LRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKL----------------------------------  506 (680)
T ss_dssp             CTTSCCBCTTCSSCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTC----------------------------------
T ss_pred             hccccccccccCCcccccCCCCCEEECCCCCCCcCChhhhcccccc----------------------------------
Confidence            9999987  5789999999999999999999998888888888877                                  


Q ss_pred             CCCceeEEEccCCccCCCCC--------ccccCcCCCCeEEccCCcccccCCCCccCCCCCCEEeCCCCcCCCCCccccc
Q 036375          824 TPRLFHFIDLSGNNLHGDFP--------TQLTKLVGLVVLNLSRNHIGGQIPENISGLHQLASLDLSSNNLSGGIPSSLS  895 (1009)
Q Consensus       824 ~~~~l~~L~Ls~N~l~~~~p--------~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~l~  895 (1009)
                           +.|+|++|++++..+        ..++++++|++|+|++|+++...++.|+++++|+.|||++|++++..+..|.
T Consensus       507 -----~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~  581 (680)
T 1ziw_A          507 -----EILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFN  581 (680)
T ss_dssp             -----CEEECCSSCCGGGGSTTSTTSCCCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTT
T ss_pred             -----CEEeCCCCCccccchhhccCCcchhhcCCCCCCEEECCCCCCCCCCHHHcccccCcceeECCCCCCCcCCHhHhC
Confidence                 899999999987532        3488999999999999999977667899999999999999999988888899


Q ss_pred             CCCCCCeEeCCCCcceecCCCCC--CCCcccCCcCCCCCCCCCCC
Q 036375          896 SLSFLGYINLSRNQLSGKIPFEG--HMTTFDASSFAGNPGLCGDP  938 (1009)
Q Consensus       896 ~l~~L~~L~ls~N~l~g~ip~~~--~~~~~~~~~~~~n~~lc~~~  938 (1009)
                      .+++|++|++++|++++..|..-  .+..+....+.|||+.|+++
T Consensus       582 ~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~l~l~~N~~~c~c~  626 (680)
T 1ziw_A          582 NQVSLKSLNLQKNLITSVEKKVFGPAFRNLTELDMRFNPFDCTCE  626 (680)
T ss_dssp             TCTTCCEEECTTSCCCBCCHHHHHHHHTTCSEEECTTCCCCBCCC
T ss_pred             CCCCCCEEECCCCcCCccChhHhcccccccCEEEccCCCcccCCc
Confidence            99999999999999999876421  34556667789999999865

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=100.00  E-value=5.2e-53  Score=510.54  Aligned_cols=535  Identities=22%  Similarity=0.201  Sum_probs=390.8

Q ss_pred             EEcccccccccCCccccCCCCCCEEEccCCcccccCchhhhcccCCCEEEcCCCcCCCCCCccccccccccCCCCCCCCC
Q 036375          302 LNFASNKLHGKLPSSVANMTSLTNFDLFDKKVEGGIPSSIARLCYLKEFDLSGNNLTGSLPEILQGTDLCVSSNSPLPSL  381 (1009)
Q Consensus       302 L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~l~~L  381 (1009)
                      ++.++..+. .+|..+.  +.+++|++++|.+++..|..|+++++|++|++++|.+.+..|..+.          .+++|
T Consensus        17 ~~c~~~~l~-~iP~~l~--~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~----------~l~~L   83 (606)
T 3t6q_A           17 YNCENLGLN-EIPGTLP--NSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQ----------SQHRL   83 (606)
T ss_dssp             EECTTSCCS-SCCTTSC--TTCCEEECTTCCCSEECTTTSTTCTTCSEEECTTCCCCEECTTTTT----------TCTTC
T ss_pred             EECCCCCcc-cCcCCCC--CcCcEEEccCCccCcCChhHhccCccceEEECCCCccceeChhhcc----------Ccccc
Confidence            344443333 3444443  2566666666666666566666666666666666666665555555          56677


Q ss_pred             cEEECcCCcCcccCChhhcCCCCCCEEeCcCCcccccCCCCCCCCCCCcEEeCCCCcCCCCCCcccCCCCCCCEEEccCc
Q 036375          382 ISMRLGNNHLKGKLPEWLSQLENLVELTLSYNLLQGPIPASLGNLKNLTKLNLPGNQLNGTLPETLGSLPELSVLDVSSN  461 (1009)
Q Consensus       382 ~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n  461 (1009)
                      ++|++++|.+.+..|..++.+++|++|++++|.+++..+..++++++|++|++++|.+++..+..+..+++|++|++++|
T Consensus        84 ~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n  163 (606)
T 3t6q_A           84 DTLVLTANPLIFMAETALSGPKALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNN  163 (606)
T ss_dssp             CEEECTTCCCSEECTTTTSSCTTCCEEECTTSCCSCGGGSCCTTCTTCCEEECCSSCCCCCCCCTTCCCTTCCEEECCSS
T ss_pred             CeeeCCCCcccccChhhhcccccccEeeccccCcccCCcchhccCCcccEEECCCCcccccCcccccCCcccCEEEcccC
Confidence            77777777776666667777777777777777777655666777777777777777776543334444777777777777


Q ss_pred             ccccccchhhhccCCCCc--EEeCCCCcccccCCCCCCCCccccEEecccCcCCCCCCcccccCCCccEEEccCCcccC-
Q 036375          462 SLTGIISEIHFSRLSKLK--FLGLSSNSFILNVSSSWIPPFQVQSLNMRSCQLGPSFPSWLKTQQGVSFLDFSNASISG-  538 (1009)
Q Consensus       462 ~l~~~~~~~~~~~l~~L~--~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~ls~n~i~~-  538 (1009)
                      .+++..+. .+..+++|+  +|++++|.+....+..+. ...++.+++++|.   ..+..+..+..+....+.-..+.+ 
T Consensus       164 ~l~~~~~~-~~~~l~~L~~l~L~l~~n~l~~~~~~~~~-~~~L~~L~l~~~~---~~~~~~~~l~~~~l~~l~~~~~~~~  238 (606)
T 3t6q_A          164 AIHYLSKE-DMSSLQQATNLSLNLNGNDIAGIEPGAFD-SAVFQSLNFGGTQ---NLLVIFKGLKNSTIQSLWLGTFEDM  238 (606)
T ss_dssp             CCCEECHH-HHHTTTTCCSEEEECTTCCCCEECTTTTT-TCEEEEEECTTCS---CHHHHHHHTTTCEEEEEECCCCTTS
T ss_pred             cccccChh-hhhhhcccceeEEecCCCccCccChhHhh-hccccccccCCch---hHHHHhhhccccchhheechhhccc
Confidence            77654333 466777777  677777776655444433 2456666666664   233444444444433333222211 


Q ss_pred             ---CCCchhhhccC--cccEEEeccccccccCCCCCCCCCcCeEeccCCCCCCCCCCCCCCccEEEccCCcCCCcCCchh
Q 036375          539 ---PIPNWFWDISS--KLSLLNVSLNQLQGQLPNPLNIAPFADVDFRSNLLEGPIPLPIVEIELLDLSNNHFSGPIPQNI  613 (1009)
Q Consensus       539 ---~~p~~~~~~~~--~L~~L~ls~n~l~~~~~~~~~~~~l~~l~l~~n~l~~~~~~~~~~L~~L~Ls~n~l~~~ip~~~  613 (1009)
                         .++...+..+.  +++.+++++|.+++..+..+.                    .+++|++|++++|.++ .+|..+
T Consensus       239 ~~~~i~~~~~~~l~~~~L~~L~l~~n~l~~~~~~~~~--------------------~l~~L~~L~l~~n~l~-~lp~~l  297 (606)
T 3t6q_A          239 DDEDISPAVFEGLCEMSVESINLQKHYFFNISSNTFH--------------------CFSGLQELDLTATHLS-ELPSGL  297 (606)
T ss_dssp             CCCCCCGGGGGGGGGSEEEEEECTTCCCSSCCTTTTT--------------------TCTTCSEEECTTSCCS-CCCSSC
T ss_pred             cccccChhHhchhhcCceeEEEeecCccCccCHHHhc--------------------cccCCCEEeccCCccC-CCChhh
Confidence               11111111111  566666666666544333221                    2468888899998887 777654


Q ss_pred             hcCCCCccEEEccCCcccccCCcccccCCCCCeEEccCCcCCccCcC-cccCCCCCCEEECCCCcCcccC--CccccCCC
Q 036375          614 SGSMPNLIFLSVSGNRLTGKIPGSIGEMQLLQVIDLSRNSISGSISS-SIGNCTFLKVLDLSYSSLSGVI--PASLGQLT  690 (1009)
Q Consensus       614 ~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~-~l~~l~~L~~L~Ls~N~l~~~~--p~~~~~l~  690 (1009)
                       ..+++|++|++++|++++..|..+.++++|++|++++|.+.+.+|. .+..+++|++|++++|++++..  |..+..++
T Consensus       298 -~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~  376 (606)
T 3t6q_A          298 -VGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLS  376 (606)
T ss_dssp             -CSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECCSCSSCCBCCSSTTTTCTTCCEEECCSSCCCEEEESTTTTTTCT
T ss_pred             -cccccCCEEECccCCcCcCchhhhhccCcCCEEECCCCCcccccchhhhhccCcCCEEECCCCccccccCcchhcccCC
Confidence             6788999999999999988888899999999999999998866654 4889999999999999998776  77888999


Q ss_pred             CCCEEEccCccccCCCchhhcCCCCCCEEECcCCcccccCchhhhhcCcCCcEEEccCCcccccCCcccCCCCCCCEEEc
Q 036375          691 RLQSLHLNNNKLTGNLPSSFQNLTSLETLDLGNNRFSGNIPSLLGNGFVGLRILSLRSNAFSGEIPSKLSNLSSLQVLDL  770 (1009)
Q Consensus       691 ~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~ip~~l~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L  770 (1009)
                      +|++|++++|++++..|..|..+++|++|++++|++.+..|...+..+++|+.|++++|.+++..|..+..+++|++|++
T Consensus       377 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L  456 (606)
T 3t6q_A          377 HLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNL  456 (606)
T ss_dssp             TCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEECCTTCCTTTTCTTCCEEECTTCCCBTTCTTTTTTCTTCCEEEC
T ss_pred             CCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCCCcccchhhhCcccCCEEECCCCccCCcCHHHHhCCCCCCEEEC
Confidence            99999999999998888899999999999999999987777654446899999999999999888888999999999999


Q ss_pred             cCCcCCCC---CChhhhhhhhhhhccchhhhhhccccccceeeceEEEeecCCCCCCCCceeEEEccCCccCCCCCcccc
Q 036375          771 AENNLTGS---IPGSVGDLKAMAHVQNIVKYLLFGRYRGIYYEENLVINTKGSSKDTPRLFHFIDLSGNNLHGDFPTQLT  847 (1009)
Q Consensus       771 s~N~l~~~---~p~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~Ls~N~l~~~~p~~l~  847 (1009)
                      ++|++++.   .+..+..+++|                                       +.|+|++|++++..|..++
T Consensus       457 ~~n~l~~~~~~~~~~~~~l~~L---------------------------------------~~L~Ls~n~l~~~~~~~~~  497 (606)
T 3t6q_A          457 QGNHFPKGNIQKTNSLQTLGRL---------------------------------------EILVLSFCDLSSIDQHAFT  497 (606)
T ss_dssp             TTCBCGGGEECSSCGGGGCTTC---------------------------------------CEEECTTSCCCEECTTTTT
T ss_pred             CCCCCCccccccchhhccCCCc---------------------------------------cEEECCCCccCccChhhhc
Confidence            99999873   23456666666                                       8899999999999999999


Q ss_pred             CcCCCCeEEccCCcccccCCCCccCCCCCCEEeCCCCcCCCCCcccccCCCCCCeEeCCCCcceecCCC
Q 036375          848 KLVGLVVLNLSRNHIGGQIPENISGLHQLASLDLSSNNLSGGIPSSLSSLSFLGYINLSRNQLSGKIPF  916 (1009)
Q Consensus       848 ~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~ls~N~l~g~ip~  916 (1009)
                      ++++|+.|+|++|++++.+|+.+.++++| +||+++|++++.+|..++.+++|+++++++|++++.++.
T Consensus       498 ~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L-~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~~  565 (606)
T 3t6q_A          498 SLKMMNHVDLSHNRLTSSSIEALSHLKGI-YLNLASNHISIILPSLLPILSQQRTINLRQNPLDCTCSN  565 (606)
T ss_dssp             TCTTCCEEECCSSCCCGGGGGGGTTCCSC-EEECCSSCCCCCCGGGHHHHHTSSEEECTTCCEECSGGG
T ss_pred             cccCCCEEECCCCccCcCChhHhCccccc-EEECcCCcccccCHhhcccCCCCCEEeCCCCCccccCCc
Confidence            99999999999999999999999999999 999999999999999999999999999999999887663

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=100.00  E-value=1.9e-53  Score=530.97  Aligned_cols=578  Identities=21%  Similarity=0.241  Sum_probs=269.6

Q ss_pred             EEcccccccccCCccccCCCCCCEEEccCCcccccCchhhhcccCCCEEEcCCCcCCCCC-CccccccccccCCCCCCCC
Q 036375          302 LNFASNKLHGKLPSSVANMTSLTNFDLFDKKVEGGIPSSIARLCYLKEFDLSGNNLTGSL-PEILQGTDLCVSSNSPLPS  380 (1009)
Q Consensus       302 L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~-~~~~~~~~~~~~~~~~l~~  380 (1009)
                      .+.++++++ .+|.   ..++|++|++++|.+++..|..|.++++|++|++++|...+.+ |..+.          .+++
T Consensus         9 ~dcs~~~L~-~vP~---lp~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~----------~L~~   74 (844)
T 3j0a_A            9 AFYRFCNLT-QVPQ---VLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFR----------NLPN   74 (844)
T ss_dssp             EEESCCCSS-CCCS---SCTTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTS----------SCTT
T ss_pred             EEccCCCCC-CCCC---CCCCcCEEECCCCcCCccChhHCcccccCeEEeCCCCCCccccCHHHhc----------CCCC
Confidence            344444444 3343   2356666666666666666666666666666666666444333 33333          5666


Q ss_pred             CcEEECcCCcCcccCChhhcCCCCCCEEeCcCCcccccCCCC--CCCCCCCcEEeCCCCcCCCCCC-cccCCCCCCCEEE
Q 036375          381 LISMRLGNNHLKGKLPEWLSQLENLVELTLSYNLLQGPIPAS--LGNLKNLTKLNLPGNQLNGTLP-ETLGSLPELSVLD  457 (1009)
Q Consensus       381 L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~--l~~l~~L~~L~L~~n~l~~~~p-~~l~~l~~L~~L~  457 (1009)
                      |++|++++|.+.+..|.+|..+++|++|+|++|.+++.+|..  +.++++|++|++++|.+++..+ ..++++++|++|+
T Consensus        75 L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~  154 (844)
T 3j0a_A           75 LRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSID  154 (844)
T ss_dssp             CCEEECTTCCCCEECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEE
T ss_pred             CCEEECCCCcCcccCHhHccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEE
Confidence            666666666666666666666666666666666666544443  6666667777776666665443 3566666677777


Q ss_pred             ccCcccccccchhhhccC--CCCcEEeCCCCcccccCCCCCCCCccccEEecccCcCCCCCCcccccCCCccEEEccCCc
Q 036375          458 VSSNSLTGIISEIHFSRL--SKLKFLGLSSNSFILNVSSSWIPPFQVQSLNMRSCQLGPSFPSWLKTQQGVSFLDFSNAS  535 (1009)
Q Consensus       458 Ls~n~l~~~~~~~~~~~l--~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~ls~n~  535 (1009)
                      +++|.+++..+. .+..+  ++|+.|++++|.+.......+.....                 .+.. ..|+.|++++|.
T Consensus       155 Ls~N~i~~~~~~-~l~~l~~~~L~~L~L~~n~l~~~~~~~~~~~~~-----------------~~~~-~~L~~L~Ls~n~  215 (844)
T 3j0a_A          155 FSSNQIFLVCEH-ELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMN-----------------PFRN-MVLEILDVSGNG  215 (844)
T ss_dssp             EESSCCCCCCSG-GGHHHHHCSSCCCEECCSBSCCCCCCCCCSSSC-----------------TTTT-CCBSEEBCSSCC
T ss_pred             CCCCcCCeeCHH-HcccccCCccceEECCCCccccccccchhhcCC-----------------cccc-CceeEEecCCCc
Confidence            776666654443 24444  56666666666554333222211111                 0000 125555555555


Q ss_pred             ccCCCCchhhhcc--CcccEEEeccccccccCCCCCCCCCcCeEeccCCCCCCCCCCCCCCccEEEccCCcCCCcCCchh
Q 036375          536 ISGPIPNWFWDIS--SKLSLLNVSLNQLQGQLPNPLNIAPFADVDFRSNLLEGPIPLPIVEIELLDLSNNHFSGPIPQNI  613 (1009)
Q Consensus       536 i~~~~p~~~~~~~--~~L~~L~ls~n~l~~~~~~~~~~~~l~~l~l~~n~l~~~~~~~~~~L~~L~Ls~n~l~~~ip~~~  613 (1009)
                      +++.++..+....  .++..+.++.+.......    ...+.  +...+.+.+.   ..++++.|++++|.+.+.. ...
T Consensus       216 l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~~----~~~l~--~~~~~~f~~l---~~~~L~~L~Ls~n~l~~~~-~~~  285 (844)
T 3j0a_A          216 WTVDITGNFSNAISKSQAFSLILAHHIMGAGFG----FHNIK--DPDQNTFAGL---ARSSVRHLDLSHGFVFSLN-SRV  285 (844)
T ss_dssp             SSTTTTSGGGGTSCSCCBSEEECCSSCCBCSSS----CSSST--TGGGTTTTTT---TTSCCCEEECTTCCCCEEC-SCC
T ss_pred             CchhHHHHHHhhcCcccccceeccccccccccc----ccccC--CCChhhhhcc---ccCCccEEECCCCcccccC-hhh
Confidence            5554444443322  234444444222211100    00000  0001111111   1134555555555554322 233


Q ss_pred             hcCCCCccEEEccCCcccccCCcccccCCCCCeEEccCCcCCccCcCcccCCCCCCEEECCCCcCcccCCccccCCCCCC
Q 036375          614 SGSMPNLIFLSVSGNRLTGKIPGSIGEMQLLQVIDLSRNSISGSISSSIGNCTFLKVLDLSYSSLSGVIPASLGQLTRLQ  693 (1009)
Q Consensus       614 ~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~  693 (1009)
                      +..+++|++|++++|++++..|..|.++++|++|++++|++++..|..|.++++|++|++++|++.+..+..|..+++|+
T Consensus       286 ~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~  365 (844)
T 3j0a_A          286 FETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQ  365 (844)
T ss_dssp             SSSCCCCCEEEEESCCCCEECTTTTTTCSSCCEEEEESCCCSCCCSCSCSSCTTCCEEECCSCCCCCCCSSCSCSCCCCC
T ss_pred             hhcCCCCCEEECCCCcCCCCChHHhcCCCCCCEEECCCCCCCccCHHHhcCCCCCCEEECCCCCCCccChhhhcCCCCCC
Confidence            34455555555555555555555555555555555555555555555555555555555555555554444555555555


Q ss_pred             EEEccCccccCCCchhhcCCCCCCEEECcCCcccccCchhhhhcCcCCcEEEccCCcccccC-CcccCCCCCCCEEEccC
Q 036375          694 SLHLNNNKLTGNLPSSFQNLTSLETLDLGNNRFSGNIPSLLGNGFVGLRILSLRSNAFSGEI-PSKLSNLSSLQVLDLAE  772 (1009)
Q Consensus       694 ~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~ip~~l~~~l~~L~~L~L~~N~l~~~~-p~~l~~l~~L~~L~Ls~  772 (1009)
                      .|++++|.+++.     ..+++|+.|++++|+++ .+|..    ..+++.|++++|++++.. +..+..+++|+.|++++
T Consensus       366 ~L~Ls~N~l~~i-----~~~~~L~~L~l~~N~l~-~l~~~----~~~l~~L~ls~N~l~~l~~~~~~~~l~~L~~L~Ls~  435 (844)
T 3j0a_A          366 TLDLRDNALTTI-----HFIPSIPDIFLSGNKLV-TLPKI----NLTANLIHLSENRLENLDILYFLLRVPHLQILILNQ  435 (844)
T ss_dssp             EEEEETCCSCCC-----SSCCSCSEEEEESCCCC-CCCCC----CTTCCEEECCSCCCCSSTTHHHHTTCTTCCEEEEES
T ss_pred             EEECCCCCCCcc-----cCCCCcchhccCCCCcc-ccccc----ccccceeecccCccccCchhhhhhcCCccceeeCCC
Confidence            555555555421     11445555555555554 44432    334555555555554321 11233455555555555


Q ss_pred             CcCCCCCCh-hhhhhhhhhhccchhhhhhccccccceeeceEEEeecCCCCCCCCceeEEEccCCccCCCCCccccCcCC
Q 036375          773 NNLTGSIPG-SVGDLKAMAHVQNIVKYLLFGRYRGIYYEENLVINTKGSSKDTPRLFHFIDLSGNNLHGDFPTQLTKLVG  851 (1009)
Q Consensus       773 N~l~~~~p~-~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~Ls~N~l~~~~p~~l~~l~~  851 (1009)
                      |++++..+. .+..+++|+.+....+.+......+          ...........++.|||++|++++..|..|.++++
T Consensus       436 N~l~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~~~~----------~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~  505 (844)
T 3j0a_A          436 NRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETE----------LCWDVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTA  505 (844)
T ss_dssp             CCCCCCCSSSSSCSCTTCCBCEEESCCCSSSCCSC----------CCSSCSSCBCCEECCCCCHHHHTTCCTTSSSSCCS
T ss_pred             CcccccccccccccCCccccccCCCCccccccccc----------cchhhhcCcccccEEECCCCcccccChhHccchhh
Confidence            555543222 1111222200000000000000000          00000000001244555555555555555555555


Q ss_pred             CCeEEccCCcccccCCCCccCCCCCCEEeCCCCcCCCCCcccccCCCCCCeEeCCCCcceecCCCCCCCCcccCCcCCCC
Q 036375          852 LVVLNLSRNHIGGQIPENISGLHQLASLDLSSNNLSGGIPSSLSSLSFLGYINLSRNQLSGKIPFEGHMTTFDASSFAGN  931 (1009)
Q Consensus       852 L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~ls~N~l~g~ip~~~~~~~~~~~~~~~n  931 (1009)
                      |+.|+|++|++++.+|..+.  ++|+.|||++|++++.+|..|.   +|+++++++|++.+.++..    .|......+|
T Consensus       506 L~~L~Ls~N~l~~l~~~~~~--~~L~~L~Ls~N~l~~~~~~~~~---~L~~l~l~~Np~~C~c~~~----~f~~~~~~~~  576 (844)
T 3j0a_A          506 LRGLSLNSNRLTVLSHNDLP--ANLEILDISRNQLLAPNPDVFV---SLSVLDITHNKFICECELS----TFINWLNHTN  576 (844)
T ss_dssp             CSEEEEESCCCSSCCCCCCC--SCCCEEEEEEECCCCCCSCCCS---SCCEEEEEEECCCCSSSCC----SHHHHHHHTT
T ss_pred             hheeECCCCCCCccChhhhh--ccccEEECCCCcCCCCChhHhC---CcCEEEecCCCcccccccH----HHHHHHHhcC
Confidence            55555555555544444443  4555555555555555554432   3445555555554443321    1111111233


Q ss_pred             CCCCCCCCCCCCCCCCCCCC
Q 036375          932 PGLCGDPLPVKCQDDESDKG  951 (1009)
Q Consensus       932 ~~lc~~~~~~~c~~~~~~~~  951 (1009)
                      ..+||.+....|..+....+
T Consensus       577 ~~~~~~~~~~~C~~p~~~~g  596 (844)
T 3j0a_A          577 VTIAGPPADIYCVYPDSFSG  596 (844)
T ss_dssp             TTTCCCGGGCCCSSCSSSCS
T ss_pred             cccccccccCccCCchhhCC
Confidence            34445555567876654433

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=100.00  E-value=4.3e-52  Score=502.56  Aligned_cols=540  Identities=20%  Similarity=0.203  Sum_probs=395.5

Q ss_pred             cEEECCCCCCCCCchhhhhcCCCCcEEEccCCcCcccCCcccCCCCCCCEEEcCCCCCCCCcccccccCCCCCccEEEcc
Q 036375          226 AVLDLSLNHFNSLFPNWLVNISTLVYVDLSDCDLYGRIPIGFGELPNLQYLSLAGNNNLSGSCSQLFRGSWKKIQILNFA  305 (1009)
Q Consensus       226 ~~L~L~~n~~~~~~p~~l~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~~~~~L~~L~l~  305 (1009)
                      ++++.+++.++.. |..+.  +++++|++++|++.+..+..+.++++|++|++++|                        
T Consensus        14 ~~~~c~~~~l~~i-p~~~~--~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n------------------------   66 (606)
T 3vq2_A           14 ITYQCMDQKLSKV-PDDIP--SSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRC------------------------   66 (606)
T ss_dssp             TEEECTTSCCSSC-CTTSC--TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTC------------------------
T ss_pred             CceEccCCCcccC-CCCCC--CCcCEEECCCCCcCEeChhhccCCccCcEEeCCCC------------------------
Confidence            4566666666544 33222  56666666666666655556666666666666655                        


Q ss_pred             cccccccCCccccCCCCCCEEEccCCcccccCchhhhcccCCCEEEcCCCcCCCCCCccccccccccCCCCCCCCCcEEE
Q 036375          306 SNKLHGKLPSSVANMTSLTNFDLFDKKVEGGIPSSIARLCYLKEFDLSGNNLTGSLPEILQGTDLCVSSNSPLPSLISMR  385 (1009)
Q Consensus       306 ~n~l~~~~p~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~  385 (1009)
                        .+.+..|..|+++++|++|++++|.+.+..|..|+++++|++|++++|.+++..+..+.          .+++|++|+
T Consensus        67 --~l~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~----------~l~~L~~L~  134 (606)
T 3vq2_A           67 --EIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVETKLASLESFPIG----------QLITLKKLN  134 (606)
T ss_dssp             --CCCEECTTTTTTCTTCCEEECTTCCCCCCCTTSSTTCTTCCEEECTTSCCCCSSSSCCT----------TCTTCCEEE
T ss_pred             --cccccCHHHhhchhhcCEeECCCCcccccChhhcCCcccCCEEEccCCccccccccccC----------CCCCCCEEe
Confidence              44555666777788888888888888777777788888888888888887766665555          688888888


Q ss_pred             CcCCcCcc-cCChhhcCCCCCCEEeCcCCcccccCCCCCCCCCCCc----EEeCCCCcCCCCCCcccCCCCCCCEEEccC
Q 036375          386 LGNNHLKG-KLPEWLSQLENLVELTLSYNLLQGPIPASLGNLKNLT----KLNLPGNQLNGTLPETLGSLPELSVLDVSS  460 (1009)
Q Consensus       386 L~~n~l~~-~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~----~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~  460 (1009)
                      +++|.+.+ .+|..++++++|++|++++|.+++..|..++.+++|+    +|++++|.+++..+..+.. .+|++|++++
T Consensus       135 L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~~l~~L~l~~n~l~~~~~~~~~~-~~L~~L~L~~  213 (606)
T 3vq2_A          135 VAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSLNPIDFIQDQAFQG-IKLHELTLRG  213 (606)
T ss_dssp             CCSSCCCCCCCCGGGGTCTTCCEEECCSSCCCEECTTTTHHHHHCTTCCCEEECTTCCCCEECTTTTTT-CEEEEEEEES
T ss_pred             CCCCcccceechHhHhhcCCCCEEEccCCcceecChhhhhhhhccccccceeeccCCCcceeCcccccC-ceeeeeeccC
Confidence            88888875 5688899999999999999999988888887776665    7999999998655555544 4899999999


Q ss_pred             cccccccchhhhccCCCCcEEeCCCCcccccCCCCCCCCccccEEecccCcCCCCCCcccccCCCccEEEccCCcccCCC
Q 036375          461 NSLTGIISEIHFSRLSKLKFLGLSSNSFILNVSSSWIPPFQVQSLNMRSCQLGPSFPSWLKTQQGVSFLDFSNASISGPI  540 (1009)
Q Consensus       461 n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~ls~n~i~~~~  540 (1009)
                      |.+.+......+.+++.|+.+++..+.+.......                  ...+..+..+..               
T Consensus       214 n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~l~------------------~~~~~~~~~l~~---------------  260 (606)
T 3vq2_A          214 NFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLE------------------IFEPSIMEGLCD---------------  260 (606)
T ss_dssp             CCSCHHHHHHHHHTTTTCEEEEEEEECCTTSCCCS------------------CCCGGGGTTGGG---------------
T ss_pred             CccchhHHHHHhccccccccccccccccccCCccc------------------ccChHHhhhhhh---------------
Confidence            98876555566888888888877655432111000                  000111111111               


Q ss_pred             CchhhhccCcccEEEe-ccccccccCCCCCCCCCcCeEeccCCCCCCCCCCCCCCccEEEccCCcCCCcCCchhhcCCCC
Q 036375          541 PNWFWDISSKLSLLNV-SLNQLQGQLPNPLNIAPFADVDFRSNLLEGPIPLPIVEIELLDLSNNHFSGPIPQNISGSMPN  619 (1009)
Q Consensus       541 p~~~~~~~~~L~~L~l-s~n~l~~~~~~~~~~~~l~~l~l~~n~l~~~~~~~~~~L~~L~Ls~n~l~~~ip~~~~~~l~~  619 (1009)
                              ..++.+++ ..|.+.+.+|. +.                    .+++|+.|++++|.+. .+|  .+..+++
T Consensus       261 --------l~l~~l~l~~~~~~~~~~~~-~~--------------------~l~~L~~L~l~~~~~~-~l~--~l~~~~~  308 (606)
T 3vq2_A          261 --------VTIDEFRLTYTNDFSDDIVK-FH--------------------CLANVSAMSLAGVSIK-YLE--DVPKHFK  308 (606)
T ss_dssp             --------SEEEEEEECCCTTCCGGGGS-CG--------------------GGTTCSEEEEESCCCC-CCC--CCCTTCC
T ss_pred             --------ccHhheeccccccccccccc-cc--------------------cCCCCCEEEecCccch-hhh--hcccccc
Confidence                    02223333 33333333332 10                    1245555666666554 444  3456777


Q ss_pred             ccEEEccCCcccccCCcccccCCCCCeEEccCCcCCccCcCcccCCCCCCEEECCCCcCccc--CCccccCCCCCCEEEc
Q 036375          620 LIFLSVSGNRLTGKIPGSIGEMQLLQVIDLSRNSISGSISSSIGNCTFLKVLDLSYSSLSGV--IPASLGQLTRLQSLHL  697 (1009)
Q Consensus       620 L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~--~p~~~~~l~~L~~L~L  697 (1009)
                      |++|++++|++ +.+| .+ .+++|++|++++|+..+..  .+..+++|++|++++|++++.  .|..+..+++|++|++
T Consensus       309 L~~L~l~~n~l-~~lp-~~-~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L  383 (606)
T 3vq2_A          309 WQSLSIIRCQL-KQFP-TL-DLPFLKSLTLTMNKGSISF--KKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDL  383 (606)
T ss_dssp             CSEEEEESCCC-SSCC-CC-CCSSCCEEEEESCSSCEEC--CCCCCTTCCEEECCSSCEEEEEECCHHHHCCSCCCEEEC
T ss_pred             CCEEEcccccC-cccc-cC-CCCccceeeccCCcCccch--hhccCCCCCEEECcCCccCCCcchhhhhccCCcccEeEC
Confidence            88888888877 5566 44 7888888888888655443  566788888888888888866  3777888888888888


Q ss_pred             cCccccCCCchhhcCCCCCCEEECcCCcccccCchhhhhcCcCCcEEEccCCcccccCCcccCCCCCCCEEEccCCcCCC
Q 036375          698 NNNKLTGNLPSSFQNLTSLETLDLGNNRFSGNIPSLLGNGFVGLRILSLRSNAFSGEIPSKLSNLSSLQVLDLAENNLTG  777 (1009)
Q Consensus       698 ~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~ip~~l~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~  777 (1009)
                      ++|.+++ +|..+..+++|++|++++|++.+..|...+..+++|+.|++++|.+++..|..+..+++|++|++++|++++
T Consensus       384 ~~n~l~~-~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~  462 (606)
T 3vq2_A          384 SFNGAII-MSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKD  462 (606)
T ss_dssp             CSCSEEE-ECCCCTTCTTCCEEECTTSEEESTTTTTTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGG
T ss_pred             CCCcccc-chhhccCCCCCCeeECCCCccCCccChhhhhccccCCEEECcCCCCCccchhhhcCCCCCCEEECCCCcCCC
Confidence            8888875 557788888888888888888877663333358889999999998888888888889999999999999887


Q ss_pred             -CCChhhhhhhhhhhccchhhhhhccccccceeeceEEEeecCCCCCCCCceeEEEccCCccCCCCCccccCcCCCCeEE
Q 036375          778 -SIPGSVGDLKAMAHVQNIVKYLLFGRYRGIYYEENLVINTKGSSKDTPRLFHFIDLSGNNLHGDFPTQLTKLVGLVVLN  856 (1009)
Q Consensus       778 -~~p~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~Ls~N~l~~~~p~~l~~l~~L~~L~  856 (1009)
                       .+|..++.+++|                                       +.|+|++|++++..|..++++++|++|+
T Consensus       463 ~~~~~~~~~l~~L---------------------------------------~~L~Ls~n~l~~~~~~~~~~l~~L~~L~  503 (606)
T 3vq2_A          463 NTLSNVFANTTNL---------------------------------------TFLDLSKCQLEQISWGVFDTLHRLQLLN  503 (606)
T ss_dssp             GEECSCCTTCTTC---------------------------------------CEEECTTSCCCEECTTTTTTCTTCCEEE
T ss_pred             cchHHhhccCCCC---------------------------------------CEEECCCCcCCccChhhhcccccCCEEE
Confidence             477778777777                                       8889999999998899999999999999


Q ss_pred             ccCCcccccCCCCccCCCCCCEEeCCCCcCCCCCcccccCCC-CCCeEeCCCCcceecCCC
Q 036375          857 LSRNHIGGQIPENISGLHQLASLDLSSNNLSGGIPSSLSSLS-FLGYINLSRNQLSGKIPF  916 (1009)
Q Consensus       857 Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~-~L~~L~ls~N~l~g~ip~  916 (1009)
                      |++|++++.+|..++++++|++||+++|+++ .+|..+..++ +|++|++++|++.+..|.
T Consensus       504 Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~-~~p~~~~~l~~~L~~l~l~~N~~~c~c~~  563 (606)
T 3vq2_A          504 MSHNNLLFLDSSHYNQLYSLSTLDCSFNRIE-TSKGILQHFPKSLAFFNLTNNSVACICEH  563 (606)
T ss_dssp             CCSSCCSCEEGGGTTTCTTCCEEECTTSCCC-CEESCGGGSCTTCCEEECCSCCCCCSSTT
T ss_pred             CCCCcCCCcCHHHccCCCcCCEEECCCCcCc-ccCHhHhhhcccCcEEEccCCCcccCCcc
Confidence            9999999999999999999999999999999 5777788887 599999999999887764

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=100.00  E-value=8.6e-52  Score=499.91  Aligned_cols=531  Identities=20%  Similarity=0.196  Sum_probs=386.8

Q ss_pred             EEEccCCcccccCchhhhcccCCCEEEcCCCcCCCCCCccccccccccCCCCCCCCCcEEECcCCcCcccCChhhcCCCC
Q 036375          325 NFDLFDKKVEGGIPSSIARLCYLKEFDLSGNNLTGSLPEILQGTDLCVSSNSPLPSLISMRLGNNHLKGKLPEWLSQLEN  404 (1009)
Q Consensus       325 ~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~  404 (1009)
                      .++.++..++ .+|..+.  +.+++|++++|.+++..|..+.          .+++|++|++++|.+.+..|..|.++++
T Consensus        16 ~~~c~~~~l~-~iP~~l~--~~l~~L~Ls~n~i~~~~~~~~~----------~l~~L~~L~Ls~n~i~~~~~~~~~~l~~   82 (606)
T 3t6q_A           16 TYNCENLGLN-EIPGTLP--NSTECLEFSFNVLPTIQNTTFS----------RLINLTFLDLTRCQIYWIHEDTFQSQHR   82 (606)
T ss_dssp             EEECTTSCCS-SCCTTSC--TTCCEEECTTCCCSEECTTTST----------TCTTCSEEECTTCCCCEECTTTTTTCTT
T ss_pred             eEECCCCCcc-cCcCCCC--CcCcEEEccCCccCcCChhHhc----------cCccceEEECCCCccceeChhhccCccc
Confidence            5555555554 4554443  2566666666666655555544          4666666666666666555666666666


Q ss_pred             CCEEeCcCCcccccCCCCCCCCCCCcEEeCCCCcCCCCCCcccCCCCCCCEEEccCcccccccchhhhccCCCCcEEeCC
Q 036375          405 LVELTLSYNLLQGPIPASLGNLKNLTKLNLPGNQLNGTLPETLGSLPELSVLDVSSNSLTGIISEIHFSRLSKLKFLGLS  484 (1009)
Q Consensus       405 L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~  484 (1009)
                      |++|++++|.+++..|..|+++++|++|++++|.+++..+..+.++++|++|++++|.+++.... .+..+++|++|+++
T Consensus        83 L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~-~~~~l~~L~~L~L~  161 (606)
T 3t6q_A           83 LDTLVLTANPLIFMAETALSGPKALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLP-KGFPTEKLKVLDFQ  161 (606)
T ss_dssp             CCEEECTTCCCSEECTTTTSSCTTCCEEECTTSCCSCGGGSCCTTCTTCCEEECCSSCCCCCCCC-TTCCCTTCCEEECC
T ss_pred             cCeeeCCCCcccccChhhhcccccccEeeccccCcccCCcchhccCCcccEEECCCCcccccCcc-cccCCcccCEEEcc
Confidence            66666666666655566666666666666666666654455566666666666666666543222 13335555555555


Q ss_pred             CCcccccCCCCCCCCccccEEecccCcCCCCCCcccccCCCcc--EEEccCCcccCCCCchhhhccCcccEEEecccccc
Q 036375          485 SNSFILNVSSSWIPPFQVQSLNMRSCQLGPSFPSWLKTQQGVS--FLDFSNASISGPIPNWFWDISSKLSLLNVSLNQLQ  562 (1009)
Q Consensus       485 ~n~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~--~L~ls~n~i~~~~p~~~~~~~~~L~~L~ls~n~l~  562 (1009)
                      +|.+                        .+..+..+..+++|+  .+++++|.+++..|..+..  ..|+.+++++|...
T Consensus       162 ~n~l------------------------~~~~~~~~~~l~~L~~l~L~l~~n~l~~~~~~~~~~--~~L~~L~l~~~~~~  215 (606)
T 3t6q_A          162 NNAI------------------------HYLSKEDMSSLQQATNLSLNLNGNDIAGIEPGAFDS--AVFQSLNFGGTQNL  215 (606)
T ss_dssp             SSCC------------------------CEECHHHHHTTTTCCSEEEECTTCCCCEECTTTTTT--CEEEEEECTTCSCH
T ss_pred             cCcc------------------------cccChhhhhhhcccceeEEecCCCccCccChhHhhh--ccccccccCCchhH
Confidence            5554                        444444555555555  5555555555555444432  35555555555311


Q ss_pred             ccCCCCCCCCCcCeEeccC------CCCCCCCCCCC--CCccEEEccCCcCCCcCCchhhcCCCCccEEEccCCcccccC
Q 036375          563 GQLPNPLNIAPFADVDFRS------NLLEGPIPLPI--VEIELLDLSNNHFSGPIPQNISGSMPNLIFLSVSGNRLTGKI  634 (1009)
Q Consensus       563 ~~~~~~~~~~~l~~l~l~~------n~l~~~~~~~~--~~L~~L~Ls~n~l~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~  634 (1009)
                      ......+....+..+.+..      ..+....+..+  .+++.|++++|.++ .++...+..+++|++|++++|+++ .+
T Consensus       216 ~~~~~~l~~~~l~~l~~~~~~~~~~~~i~~~~~~~l~~~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~-~l  293 (606)
T 3t6q_A          216 LVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFF-NISSNTFHCFSGLQELDLTATHLS-EL  293 (606)
T ss_dssp             HHHHHHTTTCEEEEEECCCCTTSCCCCCCGGGGGGGGGSEEEEEECTTCCCS-SCCTTTTTTCTTCSEEECTTSCCS-CC
T ss_pred             HHHhhhccccchhheechhhccccccccChhHhchhhcCceeEEEeecCccC-ccCHHHhccccCCCEEeccCCccC-CC
Confidence            1100001111111111110      01111111111  27899999999998 566677788999999999999998 67


Q ss_pred             CcccccCCCCCeEEccCCcCCccCcCcccCCCCCCEEECCCCcCcccCCc-cccCCCCCCEEEccCccccCCC--chhhc
Q 036375          635 PGSIGEMQLLQVIDLSRNSISGSISSSIGNCTFLKVLDLSYSSLSGVIPA-SLGQLTRLQSLHLNNNKLTGNL--PSSFQ  711 (1009)
Q Consensus       635 ~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~-~~~~l~~L~~L~L~~N~l~~~~--p~~~~  711 (1009)
                      |..+.++++|++|++++|++.+..|..+..+++|++|++++|.+.+.+|. .+..+++|++|++++|++++..  +..+.
T Consensus       294 p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~  373 (606)
T 3t6q_A          294 PSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLR  373 (606)
T ss_dssp             CSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECCSCSSCCBCCSSTTTTCTTCCEEECCSSCCCEEEESTTTTT
T ss_pred             ChhhcccccCCEEECccCCcCcCchhhhhccCcCCEEECCCCCcccccchhhhhccCcCCEEECCCCccccccCcchhcc
Confidence            88899999999999999999998899999999999999999999977665 5899999999999999999765  77899


Q ss_pred             CCCCCCEEECcCCcccccCchhhhhcCcCCcEEEccCCcccccCCcc-cCCCCCCCEEEccCCcCCCCCChhhhhhhhhh
Q 036375          712 NLTSLETLDLGNNRFSGNIPSLLGNGFVGLRILSLRSNAFSGEIPSK-LSNLSSLQVLDLAENNLTGSIPGSVGDLKAMA  790 (1009)
Q Consensus       712 ~l~~L~~L~L~~N~l~~~ip~~l~~~l~~L~~L~L~~N~l~~~~p~~-l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~  790 (1009)
                      .+++|++|++++|++.+..|..+. .+++|+.|++++|++.+..|.. +..+++|++|++++|++++..|..++.+++| 
T Consensus       374 ~l~~L~~L~l~~n~l~~~~~~~~~-~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L-  451 (606)
T 3t6q_A          374 NLSHLQSLNLSYNEPLSLKTEAFK-ECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPAL-  451 (606)
T ss_dssp             TCTTCCEEECCSCSCEEECTTTTT-TCTTCSEEECTTCCEECCTTCCTTTTCTTCCEEECTTCCCBTTCTTTTTTCTTC-
T ss_pred             cCCCCCEEECCCCcCCcCCHHHhc-CCccCCeEECCCCcCCCcccchhhhCcccCCEEECCCCccCCcCHHHHhCCCCC-
Confidence            999999999999999977777766 4999999999999999877654 8999999999999999999999988888877 


Q ss_pred             hccchhhhhhccccccceeeceEEEeecCCCCCCCCceeEEEccCCccCCC---CCccccCcCCCCeEEccCCcccccCC
Q 036375          791 HVQNIVKYLLFGRYRGIYYEENLVINTKGSSKDTPRLFHFIDLSGNNLHGD---FPTQLTKLVGLVVLNLSRNHIGGQIP  867 (1009)
Q Consensus       791 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~Ls~N~l~~~---~p~~l~~l~~L~~L~Ls~N~l~~~~p  867 (1009)
                                                            +.|+|++|++++.   .+..+..+++|+.|++++|++++.+|
T Consensus       452 --------------------------------------~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~  493 (606)
T 3t6q_A          452 --------------------------------------QHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQ  493 (606)
T ss_dssp             --------------------------------------CEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTSCCCEECT
T ss_pred             --------------------------------------CEEECCCCCCCccccccchhhccCCCccEEECCCCccCccCh
Confidence                                                  8999999999883   34679999999999999999999999


Q ss_pred             CCccCCCCCCEEeCCCCcCCCCCcccccCCCCCCeEeCCCCcceecCCCC-CCCCcccCCcCCCCCCCCCCC
Q 036375          868 ENISGLHQLASLDLSSNNLSGGIPSSLSSLSFLGYINLSRNQLSGKIPFE-GHMTTFDASSFAGNPGLCGDP  938 (1009)
Q Consensus       868 ~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~ls~N~l~g~ip~~-~~~~~~~~~~~~~n~~lc~~~  938 (1009)
                      ..|+++++|++|||++|++++.+|..+.+++.| +||+++|++++.+|.. ..+..+....+.|||+.|.++
T Consensus       494 ~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L-~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~  564 (606)
T 3t6q_A          494 HAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGI-YLNLASNHISIILPSLLPILSQQRTINLRQNPLDCTCS  564 (606)
T ss_dssp             TTTTTCTTCCEEECCSSCCCGGGGGGGTTCCSC-EEECCSSCCCCCCGGGHHHHHTSSEEECTTCCEECSGG
T ss_pred             hhhccccCCCEEECCCCccCcCChhHhCccccc-EEECcCCcccccCHhhcccCCCCCEEeCCCCCccccCC
Confidence            999999999999999999999999999999999 9999999999887753 334455666789999988654

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=100.00  E-value=2.4e-51  Score=495.93  Aligned_cols=536  Identities=21%  Similarity=0.213  Sum_probs=411.1

Q ss_pred             cEEEcccccccccCCccccCCCCCCEEEccCCcccccCchhhhcccCCCEEEcCCCcCCCCCCccccccccccCCCCCCC
Q 036375          300 QILNFASNKLHGKLPSSVANMTSLTNFDLFDKKVEGGIPSSIARLCYLKEFDLSGNNLTGSLPEILQGTDLCVSSNSPLP  379 (1009)
Q Consensus       300 ~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~l~  379 (1009)
                      ++++.+++.++ .+|..+.  +++++|++++|.+.+..+..|.++++|++|++++|.+++..|..+.          .++
T Consensus        14 ~~~~c~~~~l~-~ip~~~~--~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~----------~l~   80 (606)
T 3vq2_A           14 ITYQCMDQKLS-KVPDDIP--SSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWH----------GLH   80 (606)
T ss_dssp             TEEECTTSCCS-SCCTTSC--TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTT----------TCT
T ss_pred             CceEccCCCcc-cCCCCCC--CCcCEEECCCCCcCEeChhhccCCccCcEEeCCCCcccccCHHHhh----------chh
Confidence            34555555554 4555443  6777777777777776666777777777777777777766666555          577


Q ss_pred             CCcEEECcCCcCcccCChhhcCCCCCCEEeCcCCcccccCCCCCCCCCCCcEEeCCCCcCCC-CCCcccCCCCCCCEEEc
Q 036375          380 SLISMRLGNNHLKGKLPEWLSQLENLVELTLSYNLLQGPIPASLGNLKNLTKLNLPGNQLNG-TLPETLGSLPELSVLDV  458 (1009)
Q Consensus       380 ~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~-~~p~~l~~l~~L~~L~L  458 (1009)
                      +|++|++++|.+++..|..|+++++|++|++++|.+++..+..++++++|++|++++|.+++ .+|..++++++|++|++
T Consensus        81 ~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~L  160 (606)
T 3vq2_A           81 HLSNLILTGNPIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDL  160 (606)
T ss_dssp             TCCEEECTTCCCCCCCTTSSTTCTTCCEEECTTSCCCCSSSSCCTTCTTCCEEECCSSCCCCCCCCGGGGTCTTCCEEEC
T ss_pred             hcCEeECCCCcccccChhhcCCcccCCEEEccCCccccccccccCCCCCCCEEeCCCCcccceechHhHhhcCCCCEEEc
Confidence            78888888887777777778888888888888888877766778888888888888888875 46777888888888888


Q ss_pred             cCcccccccchhhhccCCCCc----EEeCCCCcccccCCCCCCCCccccEEecccCcCCCCCCcccccCCCccEEEccCC
Q 036375          459 SSNSLTGIISEIHFSRLSKLK----FLGLSSNSFILNVSSSWIPPFQVQSLNMRSCQLGPSFPSWLKTQQGVSFLDFSNA  534 (1009)
Q Consensus       459 s~n~l~~~~~~~~~~~l~~L~----~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~ls~n  534 (1009)
                      ++|.+++..+. .++.+++|+    +|++++|.+.......                        +... +|++|++++|
T Consensus       161 s~n~l~~~~~~-~~~~l~~L~~~l~~L~l~~n~l~~~~~~~------------------------~~~~-~L~~L~L~~n  214 (606)
T 3vq2_A          161 SYNYIQTITVN-DLQFLRENPQVNLSLDMSLNPIDFIQDQA------------------------FQGI-KLHELTLRGN  214 (606)
T ss_dssp             CSSCCCEECTT-TTHHHHHCTTCCCEEECTTCCCCEECTTT------------------------TTTC-EEEEEEEESC
T ss_pred             cCCcceecChh-hhhhhhccccccceeeccCCCcceeCccc------------------------ccCc-eeeeeeccCC
Confidence            88888765443 355544443    6777777664433322                        2222 4566666666


Q ss_pred             cccCCCCchhhhccCcccEEEeccccccccCCCCCCCCCcCeEeccCCCCCCCCCCCC--CCccEEEc-cCCcCCCcCCc
Q 036375          535 SISGPIPNWFWDISSKLSLLNVSLNQLQGQLPNPLNIAPFADVDFRSNLLEGPIPLPI--VEIELLDL-SNNHFSGPIPQ  611 (1009)
Q Consensus       535 ~i~~~~p~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~~l~~l~l~~n~l~~~~~~~~--~~L~~L~L-s~n~l~~~ip~  611 (1009)
                      .+++.........++.++.+++..+.+.+...-..              +.+..+..+  ..++.+++ ..+.+.+.+|.
T Consensus       215 ~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~l~~--------------~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~  280 (606)
T 3vq2_A          215 FNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEI--------------FEPSIMEGLCDVTIDEFRLTYTNDFSDDIVK  280 (606)
T ss_dssp             CSCHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSC--------------CCGGGGTTGGGSEEEEEEECCCTTCCGGGGS
T ss_pred             ccchhHHHHHhccccccccccccccccccCCcccc--------------cChHHhhhhhhccHhheeccccccccccccc
Confidence            55533322333345566666655544432111000              000001111  24677777 77888888876


Q ss_pred             hhhcCCCCccEEEccCCcccccCCcccccCCCCCeEEccCCcCCccCcCcccCCCCCCEEECCCCcCcccCCccccCCCC
Q 036375          612 NISGSMPNLIFLSVSGNRLTGKIPGSIGEMQLLQVIDLSRNSISGSISSSIGNCTFLKVLDLSYSSLSGVIPASLGQLTR  691 (1009)
Q Consensus       612 ~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~  691 (1009)
                        +..+++|+.|++++|.+.. +| .+..+++|++|++++|++ +.+| .+ .+++|++|++++|+..+..  .+..+++
T Consensus       281 --~~~l~~L~~L~l~~~~~~~-l~-~l~~~~~L~~L~l~~n~l-~~lp-~~-~l~~L~~L~l~~n~~~~~~--~~~~l~~  351 (606)
T 3vq2_A          281 --FHCLANVSAMSLAGVSIKY-LE-DVPKHFKWQSLSIIRCQL-KQFP-TL-DLPFLKSLTLTMNKGSISF--KKVALPS  351 (606)
T ss_dssp             --CGGGTTCSEEEEESCCCCC-CC-CCCTTCCCSEEEEESCCC-SSCC-CC-CCSSCCEEEEESCSSCEEC--CCCCCTT
T ss_pred             --cccCCCCCEEEecCccchh-hh-hccccccCCEEEcccccC-cccc-cC-CCCccceeeccCCcCccch--hhccCCC
Confidence              6789999999999999975 44 888999999999999999 6777 45 9999999999999766554  5778999


Q ss_pred             CCEEEccCccccCC--CchhhcCCCCCCEEECcCCcccccCchhhhhcCcCCcEEEccCCcccccCC-cccCCCCCCCEE
Q 036375          692 LQSLHLNNNKLTGN--LPSSFQNLTSLETLDLGNNRFSGNIPSLLGNGFVGLRILSLRSNAFSGEIP-SKLSNLSSLQVL  768 (1009)
Q Consensus       692 L~~L~L~~N~l~~~--~p~~~~~l~~L~~L~L~~N~l~~~ip~~l~~~l~~L~~L~L~~N~l~~~~p-~~l~~l~~L~~L  768 (1009)
                      |++|++++|++++.  .|..+..+++|++|++++|.++ .+|..+. .+++|+.|++++|++.+..| ..+..+++|++|
T Consensus       352 L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~-~~~~~~~-~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L  429 (606)
T 3vq2_A          352 LSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAI-IMSANFM-GLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYL  429 (606)
T ss_dssp             CCEEECCSSCEEEEEECCHHHHCCSCCCEEECCSCSEE-EECCCCT-TCTTCCEEECTTSEEESTTTTTTTTTCTTCCEE
T ss_pred             CCEEECcCCccCCCcchhhhhccCCcccEeECCCCccc-cchhhcc-CCCCCCeeECCCCccCCccChhhhhccccCCEE
Confidence            99999999999876  4889999999999999999998 5776665 59999999999999998887 689999999999


Q ss_pred             EccCCcCCCCCChhhhhhhhhhhccchhhhhhccccccceeeceEEEeecCCCCCCCCceeEEEccCCccCC-CCCcccc
Q 036375          769 DLAENNLTGSIPGSVGDLKAMAHVQNIVKYLLFGRYRGIYYEENLVINTKGSSKDTPRLFHFIDLSGNNLHG-DFPTQLT  847 (1009)
Q Consensus       769 ~Ls~N~l~~~~p~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~Ls~N~l~~-~~p~~l~  847 (1009)
                      ++++|++++..|..++++++|                                       +.|++++|.+++ .+|..++
T Consensus       430 ~l~~n~l~~~~~~~~~~l~~L---------------------------------------~~L~l~~n~l~~~~~~~~~~  470 (606)
T 3vq2_A          430 DISYTNTKIDFDGIFLGLTSL---------------------------------------NTLKMAGNSFKDNTLSNVFA  470 (606)
T ss_dssp             ECTTSCCEECCTTTTTTCTTC---------------------------------------CEEECTTCEEGGGEECSCCT
T ss_pred             ECcCCCCCccchhhhcCCCCC---------------------------------------CEEECCCCcCCCcchHHhhc
Confidence            999999999999999888877                                       899999999998 4799999


Q ss_pred             CcCCCCeEEccCCcccccCCCCccCCCCCCEEeCCCCcCCCCCcccccCCCCCCeEeCCCCcceecCCCC-CCCC-cccC
Q 036375          848 KLVGLVVLNLSRNHIGGQIPENISGLHQLASLDLSSNNLSGGIPSSLSSLSFLGYINLSRNQLSGKIPFE-GHMT-TFDA  925 (1009)
Q Consensus       848 ~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~ls~N~l~g~ip~~-~~~~-~~~~  925 (1009)
                      .+++|++|+|++|++++.+|..++++++|++|++++|++++.+|..++.+++|++||+++|+++ .+|.. ..+. .+..
T Consensus       471 ~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~-~~p~~~~~l~~~L~~  549 (606)
T 3vq2_A          471 NTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIE-TSKGILQHFPKSLAF  549 (606)
T ss_dssp             TCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCEEGGGTTTCTTCCEEECTTSCCC-CEESCGGGSCTTCCE
T ss_pred             cCCCCCEEECCCCcCCccChhhhcccccCCEEECCCCcCCCcCHHHccCCCcCCEEECCCCcCc-ccCHhHhhhcccCcE
Confidence            9999999999999999999999999999999999999999999999999999999999999998 56654 2222 3555


Q ss_pred             CcCCCCCCCCCCCC
Q 036375          926 SSFAGNPGLCGDPL  939 (1009)
Q Consensus       926 ~~~~~n~~lc~~~~  939 (1009)
                      ..+.+||+.|+++.
T Consensus       550 l~l~~N~~~c~c~~  563 (606)
T 3vq2_A          550 FNLTNNSVACICEH  563 (606)
T ss_dssp             EECCSCCCCCSSTT
T ss_pred             EEccCCCcccCCcc
Confidence            67899999997654

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=100.00  E-value=1e-50  Score=506.35  Aligned_cols=537  Identities=20%  Similarity=0.192  Sum_probs=418.7

Q ss_pred             CEEEccCCcccccCchhhhcccCCCEEEcCCCcCCCCCCccccccccccCCCCCCCCCcEEECcCCcCcccC-ChhhcCC
Q 036375          324 TNFDLFDKKVEGGIPSSIARLCYLKEFDLSGNNLTGSLPEILQGTDLCVSSNSPLPSLISMRLGNNHLKGKL-PEWLSQL  402 (1009)
Q Consensus       324 ~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~-~~~l~~l  402 (1009)
                      +..+.++++++ .+|.   -.+++++|++++|.+++..|..+.          .+++|++|++++|...+.+ |..|.++
T Consensus         7 ~~~dcs~~~L~-~vP~---lp~~l~~LdLs~N~i~~i~~~~~~----------~l~~L~~LdLs~n~~~~~i~~~~f~~L   72 (844)
T 3j0a_A            7 RIAFYRFCNLT-QVPQ---VLNTTERLLLSFNYIRTVTASSFP----------FLEQLQLLELGSQYTPLTIDKEAFRNL   72 (844)
T ss_dssp             EEEEESCCCSS-CCCS---SCTTCCEEEEESCCCCEECSSSCS----------SCCSCSEEEECTTCCCCEECTTTTSSC
T ss_pred             eEEEccCCCCC-CCCC---CCCCcCEEECCCCcCCccChhHCc----------ccccCeEEeCCCCCCccccCHHHhcCC
Confidence            35667777777 4555   457889999999988877777666          7888999999988655555 7788889


Q ss_pred             CCCCEEeCcCCcccccCCCCCCCCCCCcEEeCCCCcCCCCCCcc--cCCCCCCCEEEccCcccccccchhhhccCCCCcE
Q 036375          403 ENLVELTLSYNLLQGPIPASLGNLKNLTKLNLPGNQLNGTLPET--LGSLPELSVLDVSSNSLTGIISEIHFSRLSKLKF  480 (1009)
Q Consensus       403 ~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~--l~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~  480 (1009)
                      ++|++|+|++|.+++..|.+|.++++|++|+|++|.+++.+|..  +.++++|++|++++|.+++..+...|+++++|++
T Consensus        73 ~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~  152 (844)
T 3j0a_A           73 PNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKS  152 (844)
T ss_dssp             TTCCEEECTTCCCCEECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCE
T ss_pred             CCCCEEECCCCcCcccCHhHccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCE
Confidence            99999999999988888888999999999999999888766654  8888899999999998887665556888888888


Q ss_pred             EeCCCCcccccCCCCCCCCccccEEecccCcCCCCCCcccccC--CCccEEEccCCcccCCCCchhhhc-----cCcccE
Q 036375          481 LGLSSNSFILNVSSSWIPPFQVQSLNMRSCQLGPSFPSWLKTQ--QGVSFLDFSNASISGPIPNWFWDI-----SSKLSL  553 (1009)
Q Consensus       481 L~L~~n~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~--~~L~~L~ls~n~i~~~~p~~~~~~-----~~~L~~  553 (1009)
                      |++++|.+.                        +..+..+..+  ++|+.|++++|.+.+..|..+...     ...|+.
T Consensus       153 L~Ls~N~i~------------------------~~~~~~l~~l~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~  208 (844)
T 3j0a_A          153 IDFSSNQIF------------------------LVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEI  208 (844)
T ss_dssp             EEEESSCCC------------------------CCCSGGGHHHHHCSSCCCEECCSBSCCCCCCCCCSSSCTTTTCCBSE
T ss_pred             EECCCCcCC------------------------eeCHHHcccccCCccceEECCCCccccccccchhhcCCccccCceeE
Confidence            888887664                        3444555544  677777888887777666544321     124999


Q ss_pred             EEeccccccccCCCCCC----CCCcCeEeccCCCCCCCCCCCCCCccEEEccCCcCCCcCCchhhcC--CCCccEEEccC
Q 036375          554 LNVSLNQLQGQLPNPLN----IAPFADVDFRSNLLEGPIPLPIVEIELLDLSNNHFSGPIPQNISGS--MPNLIFLSVSG  627 (1009)
Q Consensus       554 L~ls~n~l~~~~~~~~~----~~~l~~l~l~~n~l~~~~~~~~~~L~~L~Ls~n~l~~~ip~~~~~~--l~~L~~L~Ls~  627 (1009)
                      |++++|.+++.++..+.    ...+..+.+..+.....            ...+.+.+. ....+..  .++|++|++++
T Consensus       209 L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~------------~~~~~l~~~-~~~~f~~l~~~~L~~L~Ls~  275 (844)
T 3j0a_A          209 LDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAG------------FGFHNIKDP-DQNTFAGLARSSVRHLDLSH  275 (844)
T ss_dssp             EBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBCS------------SSCSSSTTG-GGTTTTTTTTSCCCEEECTT
T ss_pred             EecCCCcCchhHHHHHHhhcCcccccceeccccccccc------------ccccccCCC-ChhhhhccccCCccEEECCC
Confidence            99999999988876543    23444444443222111            112233222 1222233  37899999999


Q ss_pred             CcccccCCcccccCCCCCeEEccCCcCCccCcCcccCCCCCCEEECCCCcCcccCCccccCCCCCCEEEccCccccCCCc
Q 036375          628 NRLTGKIPGSIGEMQLLQVIDLSRNSISGSISSSIGNCTFLKVLDLSYSSLSGVIPASLGQLTRLQSLHLNNNKLTGNLP  707 (1009)
Q Consensus       628 n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p  707 (1009)
                      |.+++..+..|..+++|+.|++++|++++..|..|.++++|++|++++|++++..|..|..+++|+.|++++|++.+..+
T Consensus       276 n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~  355 (844)
T 3j0a_A          276 GFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQD  355 (844)
T ss_dssp             CCCCEECSCCSSSCCCCCEEEEESCCCCEECTTTTTTCSSCCEEEEESCCCSCCCSCSCSSCTTCCEEECCSCCCCCCCS
T ss_pred             CcccccChhhhhcCCCCCEEECCCCcCCCCChHHhcCCCCCCEEECCCCCCCccCHHHhcCCCCCCEEECCCCCCCccCh
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999998888


Q ss_pred             hhhcCCCCCCEEECcCCcccccCchhhhhcCcCCcEEEccCCcccccCCcccCCCCCCCEEEccCCcCCCCCC-hhhhhh
Q 036375          708 SSFQNLTSLETLDLGNNRFSGNIPSLLGNGFVGLRILSLRSNAFSGEIPSKLSNLSSLQVLDLAENNLTGSIP-GSVGDL  786 (1009)
Q Consensus       708 ~~~~~l~~L~~L~L~~N~l~~~ip~~l~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p-~~~~~l  786 (1009)
                      ..|..+++|++|++++|.++ .++.     +++|+.|++++|+++ .+|..   ..+++.|++++|++++... ..+.++
T Consensus       356 ~~~~~l~~L~~L~Ls~N~l~-~i~~-----~~~L~~L~l~~N~l~-~l~~~---~~~l~~L~ls~N~l~~l~~~~~~~~l  425 (844)
T 3j0a_A          356 QTFKFLEKLQTLDLRDNALT-TIHF-----IPSIPDIFLSGNKLV-TLPKI---NLTANLIHLSENRLENLDILYFLLRV  425 (844)
T ss_dssp             SCSCSCCCCCEEEEETCCSC-CCSS-----CCSCSEEEEESCCCC-CCCCC---CTTCCEEECCSCCCCSSTTHHHHTTC
T ss_pred             hhhcCCCCCCEEECCCCCCC-cccC-----CCCcchhccCCCCcc-ccccc---ccccceeecccCccccCchhhhhhcC
Confidence            88999999999999999998 4543     789999999999998 56654   5679999999999997532 234466


Q ss_pred             hhhhhccchhhhhhccccccceeeceEEEeecCCCCCCCCceeEEEccCCccC-----CCCCccccCcCCCCeEEccCCc
Q 036375          787 KAMAHVQNIVKYLLFGRYRGIYYEENLVINTKGSSKDTPRLFHFIDLSGNNLH-----GDFPTQLTKLVGLVVLNLSRNH  861 (1009)
Q Consensus       787 ~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~Ls~N~l~-----~~~p~~l~~l~~L~~L~Ls~N~  861 (1009)
                      ++|+.+....+.+..              ............++.|+|++|.++     +..|..|.++++|+.|+|++|+
T Consensus       426 ~~L~~L~Ls~N~l~~--------------~~~~~~~~~~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~l~~L~~L~Ls~N~  491 (844)
T 3j0a_A          426 PHLQILILNQNRFSS--------------CSGDQTPSENPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHNY  491 (844)
T ss_dssp             TTCCEEEEESCCCCC--------------CCSSSSSCSCTTCCBCEEESCCCSSSCCSCCCSSCSSCBCCEECCCCCHHH
T ss_pred             CccceeeCCCCcccc--------------cccccccccCCccccccCCCCccccccccccchhhhcCcccccEEECCCCc
Confidence            666544322221100              000111222346799999999997     4556779999999999999999


Q ss_pred             ccccCCCCccCCCCCCEEeCCCCcCCCCCcccccCCCCCCeEeCCCCcceecCCCCCCCCcccCCcCCCCCCCCCCCC
Q 036375          862 IGGQIPENISGLHQLASLDLSSNNLSGGIPSSLSSLSFLGYINLSRNQLSGKIPFEGHMTTFDASSFAGNPGLCGDPL  939 (1009)
Q Consensus       862 l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~ls~N~l~g~ip~~~~~~~~~~~~~~~n~~lc~~~~  939 (1009)
                      +++.+|..|.++++|+.|+|++|++++..|..+.  ++|++||+++|+++|.+|..  +..+....+.|||+.|.+++
T Consensus       492 l~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~--~~L~~L~Ls~N~l~~~~~~~--~~~L~~l~l~~Np~~C~c~~  565 (844)
T 3j0a_A          492 LNSLPPGVFSHLTALRGLSLNSNRLTVLSHNDLP--ANLEILDISRNQLLAPNPDV--FVSLSVLDITHNKFICECEL  565 (844)
T ss_dssp             HTTCCTTSSSSCCSCSEEEEESCCCSSCCCCCCC--SCCCEEEEEEECCCCCCSCC--CSSCCEEEEEEECCCCSSSC
T ss_pred             ccccChhHccchhhhheeECCCCCCCccChhhhh--ccccEEECCCCcCCCCChhH--hCCcCEEEecCCCccccccc
Confidence            9999999999999999999999999998888877  89999999999999999964  55666777899999998764

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=100.00  E-value=2.5e-51  Score=494.51  Aligned_cols=505  Identities=20%  Similarity=0.267  Sum_probs=308.6

Q ss_pred             CCHHHHHHHHHhhhcCCCCCC--------CccCCC-CCCCCCc---cceeecCCCCcEEEEecCCCC--C-CCCCCCCCC
Q 036375           32 CSENDLDALIDFKNGLEDPES--------RLASWK-GSNCCQW---HGISCDDDTGAIVAINLGNPY--H-VVNSDSSGS   96 (1009)
Q Consensus        32 ~~~~~~~~ll~~k~~~~~~~~--------~~~~W~-~~~~c~w---~gv~c~~~~~~v~~l~l~~~~--g-i~~~l~~l~   96 (1009)
                      ....|+.||.+||.++.++..        ..++|+ +++||.|   .||+|+.. |||++|+|++..  | +|+++++++
T Consensus        27 ~~~~d~~aL~~~~~~~~~~~w~~~~~~~~~~~~W~~~~~~c~w~~~~GV~C~~~-~~V~~L~L~~~~l~g~lp~~l~~L~  105 (636)
T 4eco_A           27 EYIKDYLALKEIWDALNGKNWSQQGFGTQPGANWNFNKELDMWGAQPGVSLNSN-GRVTGLSLEGFGASGRVPDAIGQLT  105 (636)
T ss_dssp             HHHHHHHHHHHHHHHTTGGGCCCCC------CCCCCSSCGGGTTCCTTEEECTT-CCEEEEECTTSCCEEEECGGGGGCT
T ss_pred             hHHHHHHHHHHHHHHcCCCCcccCCcCCccCCCCCCCCCcccccCCCCeEEcCC-CCEEEEEecCcccCCcCChHHhcCc
Confidence            345799999999999865432        234798 6789999   99999875 999999999876  7 899999999


Q ss_pred             cCCEEeCCCCCCCC-----------CCCCcccCCCCCCceeecccCCCCccCCCCCCCC-CCCCeeeCCCccccccCCCc
Q 036375           97 LLEYLDLSFNTFND-----------IPIPEFLGSLENLQYLNLSEAGFTGVVPSSLGNL-HRLQYFDVSAELFALSADSL  164 (1009)
Q Consensus        97 ~L~~LdLs~~~~~~-----------~~lp~~i~~l~~L~~L~Ls~~~~~~~lp~~l~~L-~~L~~L~Ls~~~~~~~~~~~  164 (1009)
                      +|++|||++|.+..           ..+|...  +.+|| ++++++.+.+.+|..++.+ ..+..+++....        
T Consensus       106 ~L~~L~Ls~N~~~~~~~~~~~~~~~~~~~~~~--~~~l~-l~l~~~~l~~~~~~~~~~~~~~l~~~~l~~~~--------  174 (636)
T 4eco_A          106 ELEVLALGSHGEKVNERLFGPKGISANMSDEQ--KQKMR-MHYQKTFVDYDPREDFSDLIKDCINSDPQQKS--------  174 (636)
T ss_dssp             TCCEEESCCGGGGGTCCSBSTTSBCTTCCHHH--HHHHH-THHHHHHTCCCGGGGSCHHHHHHHHHCTTSCC--------
T ss_pred             cceEEECcCCccccCCccccccccccCchHHH--HHHHH-hhHHHhhhccCchhhHHHHHHHHhhcCccccc--------
Confidence            99999999986521           0233332  45566 7777766666555544321 112222221110        


Q ss_pred             ccccCCCCCCeEEcCCccCCCCcchhhhhhcCCCCccEEEcCCCcCCCCCCCCCCCCCCCCcEEEC--CCCCCCCCchhh
Q 036375          165 DWLTGLVSLKHLAMNRVDLSLVGSEWLGILKNLPNLTELHLSVCGLTGSITSITPVNLTSPAVLDL--SLNHFNSLFPNW  242 (1009)
Q Consensus       165 ~~l~~l~~L~~L~l~~~~l~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L--~~n~~~~~~p~~  242 (1009)
                                                                   +..       .....++.+.+  ..|++++ +|..
T Consensus       175 ---------------------------------------------~~~-------~~~~~l~~l~l~~~~n~l~~-ip~~  201 (636)
T 4eco_A          175 ---------------------------------------------IKK-------SSRITLKDTQIGQLSNNITF-VSKA  201 (636)
T ss_dssp             ---------------------------------------------CCC-------CCCCCCCTTTTTCCSCEEEE-ECGG
T ss_pred             ---------------------------------------------ccc-------ccccchhhhhhccccCCCcc-CCHH
Confidence                                                         000       00011111111  2355666 6777


Q ss_pred             hhcCCCCcEEEccCCcCccc-----------------CCcccC--CCCCCCEEEcCCCCCCCCcccccccCCCCCccEEE
Q 036375          243 LVNISTLVYVDLSDCDLYGR-----------------IPIGFG--ELPNLQYLSLAGNNNLSGSCSQLFRGSWKKIQILN  303 (1009)
Q Consensus       243 l~~l~~L~~L~L~~n~~~~~-----------------~p~~l~--~l~~L~~L~L~~n~~~~~~~~~~~~~~~~~L~~L~  303 (1009)
                      ++++++|++|+|++|.+.+.                 +|..++  ++++|                          ++|+
T Consensus       202 l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L--------------------------~~L~  255 (636)
T 4eco_A          202 VMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDL--------------------------TDVE  255 (636)
T ss_dssp             GGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTC--------------------------CEEE
T ss_pred             HhcccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCC--------------------------CEEE
Confidence            77888888888888877764                 444444  44444                          4444


Q ss_pred             cccccccccCCccccCCCCCCEEEccCCc-ccc-cCchhhhcc------cCCCEEEcCCCcCCCCCCc--cccccccccC
Q 036375          304 FASNKLHGKLPSSVANMTSLTNFDLFDKK-VEG-GIPSSIARL------CYLKEFDLSGNNLTGSLPE--ILQGTDLCVS  373 (1009)
Q Consensus       304 l~~n~l~~~~p~~l~~l~~L~~L~l~~n~-~~~-~~~~~l~~l------~~L~~L~l~~n~l~~~~~~--~~~~~~~~~~  373 (1009)
                      +++|.+.+.+|..++++++|++|++++|. +++ .+|..++++      ++|++|++++|.++ .+|.  .+.       
T Consensus       256 L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~-~ip~~~~l~-------  327 (636)
T 4eco_A          256 VYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLK-TFPVETSLQ-------  327 (636)
T ss_dssp             EECCTTCSSCCTTTTTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCS-SCCCHHHHT-------
T ss_pred             ecCCcCCccChHHHhcCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCC-ccCchhhhc-------
Confidence            44455677788888888888888888887 777 788877776      77777777777777 5555  555       


Q ss_pred             CCCCCCCCcEEECcCCcCcccCChhhcCCCCCCEEeCcCCcccccCCCCCCCCCC-CcEEeCCCCcCCCCCCcccCCCC-
Q 036375          374 SNSPLPSLISMRLGNNHLKGKLPEWLSQLENLVELTLSYNLLQGPIPASLGNLKN-LTKLNLPGNQLNGTLPETLGSLP-  451 (1009)
Q Consensus       374 ~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~-L~~L~L~~n~l~~~~p~~l~~l~-  451 (1009)
                         .+++|++|++++|.++|.+| .+..+++|++|++++|.++ .+|..+..+++ |++|++++|.++ .+|..+..++ 
T Consensus       328 ---~l~~L~~L~L~~N~l~g~ip-~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~~L~~L~Ls~N~l~-~lp~~~~~~~l  401 (636)
T 4eco_A          328 ---KMKKLGMLECLYNQLEGKLP-AFGSEIKLASLNLAYNQIT-EIPANFCGFTEQVENLSFAHNKLK-YIPNIFDAKSV  401 (636)
T ss_dssp             ---TCTTCCEEECCSCCCEEECC-CCEEEEEESEEECCSSEEE-ECCTTSEEECTTCCEEECCSSCCS-SCCSCCCTTCS
T ss_pred             ---cCCCCCEEeCcCCcCccchh-hhCCCCCCCEEECCCCccc-cccHhhhhhcccCcEEEccCCcCc-ccchhhhhccc
Confidence               56677777777777776666 6667777777777777776 56666777777 777777777776 5666555433 


Q ss_pred             -CCCEEEccCcccccccchhhhccCCCCcEEeCCCCcccccCCCCCCCCccccEEecccCcCCCCCCcccccCCCccEEE
Q 036375          452 -ELSVLDVSSNSLTGIISEIHFSRLSKLKFLGLSSNSFILNVSSSWIPPFQVQSLNMRSCQLGPSFPSWLKTQQGVSFLD  530 (1009)
Q Consensus       452 -~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~  530 (1009)
                       +|++|++++|.+++.++.. +..+.                                         .....+       
T Consensus       402 ~~L~~L~Ls~N~l~~~~p~~-l~~~~-----------------------------------------~~~~~~-------  432 (636)
T 4eco_A          402 SVMSAIDFSYNEIGSVDGKN-FDPLD-----------------------------------------PTPFKG-------  432 (636)
T ss_dssp             SCEEEEECCSSCTTTTTTCS-SCTTC-----------------------------------------SSCCCC-------
T ss_pred             CccCEEECcCCcCCCcchhh-hcccc-----------------------------------------cccccC-------
Confidence             5666666666665443321 11000                                         000011       


Q ss_pred             ccCCcccCCCCchhhhccCcccEEEeccccccccCCCCCCCCCcCeEeccCCCCCCCCCCCCCCccEEEccCCcCCCcCC
Q 036375          531 FSNASISGPIPNWFWDISSKLSLLNVSLNQLQGQLPNPLNIAPFADVDFRSNLLEGPIPLPIVEIELLDLSNNHFSGPIP  610 (1009)
Q Consensus       531 ls~n~i~~~~p~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~~l~~l~l~~n~l~~~~~~~~~~L~~L~Ls~n~l~~~ip  610 (1009)
                                                                                    .+|+.|++++|.++ .+|
T Consensus       433 --------------------------------------------------------------~~L~~L~Ls~N~l~-~lp  449 (636)
T 4eco_A          433 --------------------------------------------------------------INVSSINLSNNQIS-KFP  449 (636)
T ss_dssp             --------------------------------------------------------------CCEEEEECCSSCCC-SCC
T ss_pred             --------------------------------------------------------------CCCCEEECcCCccC-cCC
Confidence                                                                          23444444444444 444


Q ss_pred             chhhcCCCCccEEEccCCcccccCCccccc-------CCCCCeEEccCCcCCccCcCccc--CCCCCCEEECCCCcCccc
Q 036375          611 QNISGSMPNLIFLSVSGNRLTGKIPGSIGE-------MQLLQVIDLSRNSISGSISSSIG--NCTFLKVLDLSYSSLSGV  681 (1009)
Q Consensus       611 ~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~-------l~~L~~L~Ls~N~l~~~~p~~l~--~l~~L~~L~Ls~N~l~~~  681 (1009)
                      ..++..+++|++|++++|+++...+..+..       +++|++|++++|+++ .+|..+.  .+++|++|++++|++++ 
T Consensus       450 ~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~-  527 (636)
T 4eco_A          450 KELFSTGSPLSSINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFNKLT-KLSDDFRATTLPYLVGIDLSYNSFSK-  527 (636)
T ss_dssp             THHHHTTCCCSEEECCSSCCSBCCSSSSEETTEECTTGGGCCEEECCSSCCC-BCCGGGSTTTCTTCCEEECCSSCCSS-
T ss_pred             HHHHccCCCCCEEECCCCCCCCcCHHHhccccccccccCCccEEECcCCcCC-ccChhhhhccCCCcCEEECCCCCCCC-
Confidence            444444555555555555555222222221       225666666666665 4454554  56666666666666665 


Q ss_pred             CCccccCCCCCCEEEccCccccCCCchhhcCCCCCCEEECcCCcccccCchhhhhcCcCCcEEEccCCcccccCCcccCC
Q 036375          682 IPASLGQLTRLQSLHLNNNKLTGNLPSSFQNLTSLETLDLGNNRFSGNIPSLLGNGFVGLRILSLRSNAFSGEIPSKLSN  761 (1009)
Q Consensus       682 ~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~ip~~l~~~l~~L~~L~L~~N~l~~~~p~~l~~  761 (1009)
                      +|..+..+++|++|++++|+                  ++++|++.+.+|..+.. +++|+.|++++|++ +.+|..+. 
T Consensus       528 ip~~~~~l~~L~~L~Ls~N~------------------~ls~N~l~~~~p~~l~~-l~~L~~L~Ls~N~l-~~ip~~~~-  586 (636)
T 4eco_A          528 FPTQPLNSSTLKGFGIRNQR------------------DAQGNRTLREWPEGITL-CPSLTQLQIGSNDI-RKVNEKIT-  586 (636)
T ss_dssp             CCCGGGGCSSCCEEECCSCB------------------CTTCCBCCCCCCTTGGG-CSSCCEEECCSSCC-CBCCSCCC-
T ss_pred             cChhhhcCCCCCEEECCCCc------------------ccccCcccccChHHHhc-CCCCCEEECCCCcC-CccCHhHh-
Confidence            55555566666666664443                  33556666666666653 67777777777777 46666554 


Q ss_pred             CCCCCEEEccCCcCCC
Q 036375          762 LSSLQVLDLAENNLTG  777 (1009)
Q Consensus       762 l~~L~~L~Ls~N~l~~  777 (1009)
                       ++|+.||+++|++..
T Consensus       587 -~~L~~L~Ls~N~l~~  601 (636)
T 4eco_A          587 -PNISVLDIKDNPNIS  601 (636)
T ss_dssp             -TTCCEEECCSCTTCE
T ss_pred             -CcCCEEECcCCCCcc
Confidence             677777777777664

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=100.00  E-value=3.7e-49  Score=481.45  Aligned_cols=190  Identities=16%  Similarity=0.278  Sum_probs=105.4

Q ss_pred             CCCCCCchhhhhcCCCCcEEEccCCcCcc-cCCcccCCCCCCCEEEcCCCCCCCCcccccccC--CCCCccEEEcccccc
Q 036375          233 NHFNSLFPNWLVNISTLVYVDLSDCDLYG-RIPIGFGELPNLQYLSLAGNNNLSGSCSQLFRG--SWKKIQILNFASNKL  309 (1009)
Q Consensus       233 n~~~~~~p~~l~~l~~L~~L~L~~n~~~~-~~p~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~--~~~~L~~L~l~~n~l  309 (1009)
                      |.+++ +|..++++++|++|+|++|++.+ .+|..+...        +.|  ...+.+|..++  .+++|++|++++|.+
T Consensus       435 N~L~~-IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~--------s~n--~~~g~iP~~l~f~~L~~L~~L~Ls~N~l  503 (876)
T 4ecn_A          435 NRITF-ISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDA--------NSD--YAKQYENEELSWSNLKDLTDVELYNCPN  503 (876)
T ss_dssp             CEEEE-ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCT--------TSH--HHHHHTTSCCCGGGCTTCCEEEEESCTT
T ss_pred             Ccccc-hhHHHhcCCCCCEEECcCCcCCCCccccccccc--------ccc--cccccCChhhhhccCCCCCEEECcCCCC
Confidence            55656 56667777777777777777765 222111100        000  01112222222  333333333334444


Q ss_pred             cccCCccccCCCCCCEEEccCCc-ccc-cCchhhhcccCCCEEEcCCCcCCCCCCccccccccccCCCCCCCCCcEEECc
Q 036375          310 HGKLPSSVANMTSLTNFDLFDKK-VEG-GIPSSIARLCYLKEFDLSGNNLTGSLPEILQGTDLCVSSNSPLPSLISMRLG  387 (1009)
Q Consensus       310 ~~~~p~~l~~l~~L~~L~l~~n~-~~~-~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~  387 (1009)
                      .+.+|..++++++|++|++++|. +++ .+|..+++++                           ..+..+++|++|+++
T Consensus       504 ~~~iP~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~---------------------------~~~~~l~~L~~L~Ls  556 (876)
T 4ecn_A          504 MTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLA---------------------------DDEDTGPKIQIFYMG  556 (876)
T ss_dssp             CCSCCGGGGGCSSCCEEECTTCTTSCHHHHHHHHHHHH---------------------------HCTTTTTTCCEEECC
T ss_pred             CccChHHHhCCCCCCEEECcCCCCcccccchHHHHhhh---------------------------hcccccCCccEEEee
Confidence            44555555555555555555554 444 4454444433                           011134566666666


Q ss_pred             CCcCcccCCh--hhcCCCCCCEEeCcCCcccccCCCCCCCCCCCcEEeCCCCcCCCCCCcccCCCCC-CCEEEccCcccc
Q 036375          388 NNHLKGKLPE--WLSQLENLVELTLSYNLLQGPIPASLGNLKNLTKLNLPGNQLNGTLPETLGSLPE-LSVLDVSSNSLT  464 (1009)
Q Consensus       388 ~n~l~~~~~~--~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~-L~~L~Ls~n~l~  464 (1009)
                      +|.++ .+|.  .+.++++|++|++++|.++ .+| .|..+++|++|++++|.++ .+|..+..+++ |++|++++|.++
T Consensus       557 ~N~L~-~ip~~~~l~~L~~L~~L~Ls~N~l~-~lp-~~~~L~~L~~L~Ls~N~l~-~lp~~l~~l~~~L~~L~Ls~N~L~  632 (876)
T 4ecn_A          557 YNNLE-EFPASASLQKMVKLGLLDCVHNKVR-HLE-AFGTNVKLTDLKLDYNQIE-EIPEDFCAFTDQVEGLGFSHNKLK  632 (876)
T ss_dssp             SSCCC-BCCCHHHHTTCTTCCEEECTTSCCC-BCC-CCCTTSEESEEECCSSCCS-CCCTTSCEECTTCCEEECCSSCCC
T ss_pred             CCcCC-ccCChhhhhcCCCCCEEECCCCCcc-cch-hhcCCCcceEEECcCCccc-cchHHHhhccccCCEEECcCCCCC
Confidence            66666 5665  6677777777777777766 556 6677777777777777776 66666666776 777777777766

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=100.00  E-value=1.5e-46  Score=451.04  Aligned_cols=516  Identities=21%  Similarity=0.236  Sum_probs=382.1

Q ss_pred             EEcccccccccCCccccCCCCCCEEEccCCcccccCchhhhcccCCCEEEcCCCcCCCCCCccccccccccCCCCCCCCC
Q 036375          302 LNFASNKLHGKLPSSVANMTSLTNFDLFDKKVEGGIPSSIARLCYLKEFDLSGNNLTGSLPEILQGTDLCVSSNSPLPSL  381 (1009)
Q Consensus       302 L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~l~~L  381 (1009)
                      ++.++..+. .+|..+.  +++++|++++|.+++..+.+|.++++|++|++++|.+++..+..+.          .+++|
T Consensus        12 ~~c~~~~l~-~ip~~l~--~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~----------~l~~L   78 (570)
T 2z63_A           12 YQCMELNFY-KIPDNLP--FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQ----------SLSHL   78 (570)
T ss_dssp             EECCSSCCS-SCCSSSC--SSCCEEECCSCCCCEECTTTTTTCSSCCEEECTTCCCCEECTTTTT----------TCTTC
T ss_pred             EEeCCCCcc-ccCCCcc--ccccEEEccCCccCccChhHhhCCCCceEEECCCCcCCccCccccc----------CchhC
Confidence            333333333 3444332  4677777777777766666777777777777777777766555555          57778


Q ss_pred             cEEECcCCcCcccCChhhcCCCCCCEEeCcCCcccccCCCCCCCCCCCcEEeCCCCcCCC-CCCcccCCCCCCCEEEccC
Q 036375          382 ISMRLGNNHLKGKLPEWLSQLENLVELTLSYNLLQGPIPASLGNLKNLTKLNLPGNQLNG-TLPETLGSLPELSVLDVSS  460 (1009)
Q Consensus       382 ~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~-~~p~~l~~l~~L~~L~Ls~  460 (1009)
                      ++|++++|.+++..|..|..+++|++|++++|.+++..+..++++++|++|++++|.+++ .+|..++++++|++|++++
T Consensus        79 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~  158 (570)
T 2z63_A           79 STLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSS  158 (570)
T ss_dssp             CEEECTTCCCCEECTTTTTTCTTCCEEECTTSCCCCSTTCSCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTT
T ss_pred             CEEeCcCCcCCccCHhhhcCccccccccccccccccCCCccccccccccEEecCCCccceecChhhhcccCCCCEEeCcC
Confidence            888888888777777778888888888888888876665568888888888888888876 3677788888888888888


Q ss_pred             cccccccchhhhccCCCC----cEEeCCCCcccccCCCCCCCCccccEEecccCcCCC-CCCcccccCCCccEEEccCCc
Q 036375          461 NSLTGIISEIHFSRLSKL----KFLGLSSNSFILNVSSSWIPPFQVQSLNMRSCQLGP-SFPSWLKTQQGVSFLDFSNAS  535 (1009)
Q Consensus       461 n~l~~~~~~~~~~~l~~L----~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~~~~~~-~~~~~l~~~~~L~~L~ls~n~  535 (1009)
                      |.+++..+. .+..+++|    +++++++|.+.......+... +++++++++|.... .++..+..+            
T Consensus       159 n~l~~~~~~-~~~~l~~L~~~~~~L~l~~n~l~~~~~~~~~~~-~L~~L~l~~n~~~~~~~~~~~~~l------------  224 (570)
T 2z63_A          159 NKIQSIYCT-DLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEI-RLHKLTLRNNFDSLNVMKTCIQGL------------  224 (570)
T ss_dssp             SCCCEECGG-GGHHHHTCTTCCCEEECTTCCCCEECTTTTTTC-EEEEEEEESCCSCTTHHHHHHHTT------------
T ss_pred             CccceecHH-HccchhccchhhhhcccCCCCceecCHHHhccC-cceeEecccccccccchhhhhcCc------------
Confidence            888765443 46666666    677777777655444333222 44444444442211 122223333            


Q ss_pred             ccCCCCchhhhccCcccEEEeccccccccCCCCCCCCCcCeEeccCCCCCCCCCCCCCCccEEEccCC-cCCCcCCchhh
Q 036375          536 ISGPIPNWFWDISSKLSLLNVSLNQLQGQLPNPLNIAPFADVDFRSNLLEGPIPLPIVEIELLDLSNN-HFSGPIPQNIS  614 (1009)
Q Consensus       536 i~~~~p~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~~l~~l~l~~n~l~~~~~~~~~~L~~L~Ls~n-~l~~~ip~~~~  614 (1009)
                                   +.++...+....+....       .+.  .+....+.+..   -..++.++++++ .+.+.+|. .+
T Consensus       225 -------------~~l~~~~l~~~~~~~~~-------~l~--~~~~~~~~~l~---~l~l~~l~l~~~~~~~~~~~~-~~  278 (570)
T 2z63_A          225 -------------AGLEVHRLVLGEFRNEG-------NLE--KFDKSALEGLC---NLTIEEFRLAYLDYYLDDIID-LF  278 (570)
T ss_dssp             -------------TTCEEEEEEEEECCCCS-------SCE--ECCTTTTGGGG---GSEEEEEEEEETTEEESCSTT-TT
T ss_pred             -------------cccceeeeccccccCch-------hhh--hcchhhhcccc---ccchhhhhhhcchhhhhhchh-hh
Confidence                         33333333322221100       000  00001111000   023566777776 55555554 45


Q ss_pred             cCCCCccEEEccCCcccccCCcccccCCCCCeEEccCCcCCccCcCcccCCCCCCEEECCCCcCcccCCccccCCCCCCE
Q 036375          615 GSMPNLIFLSVSGNRLTGKIPGSIGEMQLLQVIDLSRNSISGSISSSIGNCTFLKVLDLSYSSLSGVIPASLGQLTRLQS  694 (1009)
Q Consensus       615 ~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~  694 (1009)
                      ..+++|++|++++|.++ .+|..+..+ +|++|++++|.+. .+|.  ..+++|++|++++|.+.+..+.  ..+++|++
T Consensus       279 ~~l~~L~~L~l~~~~l~-~l~~~~~~~-~L~~L~l~~n~~~-~l~~--~~l~~L~~L~l~~n~~~~~~~~--~~~~~L~~  351 (570)
T 2z63_A          279 NCLTNVSSFSLVSVTIE-RVKDFSYNF-GWQHLELVNCKFG-QFPT--LKLKSLKRLTFTSNKGGNAFSE--VDLPSLEF  351 (570)
T ss_dssp             GGGTTCSEEEEESCEEC-SCCBCCSCC-CCSEEEEESCBCS-SCCB--CBCSSCCEEEEESCBSCCBCCC--CBCTTCCE
T ss_pred             cCcCcccEEEecCccch-hhhhhhccC-CccEEeeccCccc-ccCc--ccccccCEEeCcCCcccccccc--ccCCCCCE
Confidence            67889999999999988 477778888 9999999999998 4554  4788999999999999877665  67899999


Q ss_pred             EEccCccccCCC--chhhcCCCCCCEEECcCCcccccCchhhhhcCcCCcEEEccCCcccccCC-cccCCCCCCCEEEcc
Q 036375          695 LHLNNNKLTGNL--PSSFQNLTSLETLDLGNNRFSGNIPSLLGNGFVGLRILSLRSNAFSGEIP-SKLSNLSSLQVLDLA  771 (1009)
Q Consensus       695 L~L~~N~l~~~~--p~~~~~l~~L~~L~L~~N~l~~~ip~~l~~~l~~L~~L~L~~N~l~~~~p-~~l~~l~~L~~L~Ls  771 (1009)
                      |++++|++++..  |..+..+++|++|++++|.+.+ +|..+. .+++|+.|++++|.+.+..| ..+..+++|++|+++
T Consensus       352 L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~-~~~~~~-~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~  429 (570)
T 2z63_A          352 LDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVIT-MSSNFL-GLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDIS  429 (570)
T ss_dssp             EECCSSCCBEEEEEEHHHHTCSCCCEEECCSCSEEE-EEEEEE-TCTTCCEEECTTSEEESCTTSCTTTTCTTCCEEECT
T ss_pred             EeCcCCccCccccccccccccCccCEEECCCCcccc-cccccc-ccCCCCEEEccCCccccccchhhhhcCCCCCEEeCc
Confidence            999999998654  7889999999999999999985 444444 59999999999999997766 568899999999999


Q ss_pred             CCcCCCCCChhhhhhhhhhhccchhhhhhccccccceeeceEEEeecCCCCCCCCceeEEEccCCccC-CCCCccccCcC
Q 036375          772 ENNLTGSIPGSVGDLKAMAHVQNIVKYLLFGRYRGIYYEENLVINTKGSSKDTPRLFHFIDLSGNNLH-GDFPTQLTKLV  850 (1009)
Q Consensus       772 ~N~l~~~~p~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~Ls~N~l~-~~~p~~l~~l~  850 (1009)
                      +|++++..|..+..+++|                                       +.|+|++|.++ +.+|..++.++
T Consensus       430 ~n~l~~~~~~~~~~l~~L---------------------------------------~~L~l~~n~l~~~~~p~~~~~l~  470 (570)
T 2z63_A          430 HTHTRVAFNGIFNGLSSL---------------------------------------EVLKMAGNSFQENFLPDIFTELR  470 (570)
T ss_dssp             TSCCEECCTTTTTTCTTC---------------------------------------CEEECTTCEEGGGEECSCCTTCT
T ss_pred             CCcccccchhhhhcCCcC---------------------------------------cEEECcCCcCccccchhhhhccc
Confidence            999999999888888877                                       89999999998 68999999999


Q ss_pred             CCCeEEccCCcccccCCCCccCCCCCCEEeCCCCcCCCCCcccccCCCCCCeEeCCCCcceecCCCCC
Q 036375          851 GLVVLNLSRNHIGGQIPENISGLHQLASLDLSSNNLSGGIPSSLSSLSFLGYINLSRNQLSGKIPFEG  918 (1009)
Q Consensus       851 ~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~ls~N~l~g~ip~~~  918 (1009)
                      +|++|++++|++++.+|..|+++++|++|++++|++++.+|..+..+++|++|++++|+++|.+|...
T Consensus       471 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~~~~  538 (570)
T 2z63_A          471 NLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRID  538 (570)
T ss_dssp             TCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTTTTH
T ss_pred             CCCEEECCCCccccCChhhhhcccCCCEEeCCCCcCCCCCHHHhhcccCCcEEEecCCcccCCCcchH
Confidence            99999999999999999999999999999999999999999999999999999999999999998643

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=100.00  E-value=6.1e-46  Score=445.66  Aligned_cols=515  Identities=21%  Similarity=0.206  Sum_probs=340.1

Q ss_pred             EEECCCCCCCCCchhhhhcCCCCcEEEccCCcCcccCCcccCCCCCCCEEEcCCCCCCCCcccccccCCCCCccEEEccc
Q 036375          227 VLDLSLNHFNSLFPNWLVNISTLVYVDLSDCDLYGRIPIGFGELPNLQYLSLAGNNNLSGSCSQLFRGSWKKIQILNFAS  306 (1009)
Q Consensus       227 ~L~L~~n~~~~~~p~~l~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~~~~~L~~L~l~~  306 (1009)
                      ..+.++..++.. |..+  .+++++|++++|++.+..+..+.++++|++|++++|                         
T Consensus        11 ~~~c~~~~l~~i-p~~l--~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n-------------------------   62 (570)
T 2z63_A           11 TYQCMELNFYKI-PDNL--PFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRC-------------------------   62 (570)
T ss_dssp             EEECCSSCCSSC-CSSS--CSSCCEEECCSCCCCEECTTTTTTCSSCCEEECTTC-------------------------
T ss_pred             EEEeCCCCcccc-CCCc--cccccEEEccCCccCccChhHhhCCCCceEEECCCC-------------------------
Confidence            445554444432 3322  135666666666666555555666666666666555                         


Q ss_pred             ccccccCCccccCCCCCCEEEccCCcccccCchhhhcccCCCEEEcCCCcCCCCCCccccccccccCCCCCCCCCcEEEC
Q 036375          307 NKLHGKLPSSVANMTSLTNFDLFDKKVEGGIPSSIARLCYLKEFDLSGNNLTGSLPEILQGTDLCVSSNSPLPSLISMRL  386 (1009)
Q Consensus       307 n~l~~~~p~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~L  386 (1009)
                       .+.+..|..|+++++|++|++++|.+.+..|..|+++++|++|++++|.+++..+..+.          .+++|++|++
T Consensus        63 -~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~----------~l~~L~~L~L  131 (570)
T 2z63_A           63 -EIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIG----------HLKTLKELNV  131 (570)
T ss_dssp             -CCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTSCCCCSTTCSCT----------TCTTCCEEEC
T ss_pred             -cCCccCcccccCchhCCEEeCcCCcCCccCHhhhcCccccccccccccccccCCCcccc----------ccccccEEec
Confidence             44544555666677777777777777666666677777777777777766654443343          5777777777


Q ss_pred             cCCcCcc-cCChhhcCCCCCCEEeCcCCcccccCCCCCCCCCCC----cEEeCCCCcCCCCCCcccCCCCCCCEEEccCc
Q 036375          387 GNNHLKG-KLPEWLSQLENLVELTLSYNLLQGPIPASLGNLKNL----TKLNLPGNQLNGTLPETLGSLPELSVLDVSSN  461 (1009)
Q Consensus       387 ~~n~l~~-~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L----~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n  461 (1009)
                      ++|.+.+ .+|..+.++++|++|++++|.+++..+..++.+++|    ++|++++|.+++..|..+... +|++|++++|
T Consensus       132 ~~n~l~~~~lp~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~~~~~L~l~~n~l~~~~~~~~~~~-~L~~L~l~~n  210 (570)
T 2z63_A          132 AHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEI-RLHKLTLRNN  210 (570)
T ss_dssp             CSSCCCCCCCCGGGGGCTTCCEEECTTSCCCEECGGGGHHHHTCTTCCCEEECTTCCCCEECTTTTTTC-EEEEEEEESC
T ss_pred             CCCccceecChhhhcccCCCCEEeCcCCccceecHHHccchhccchhhhhcccCCCCceecCHHHhccC-cceeEecccc
Confidence            7777765 357777788888888888888777767777777777    778888888876666666554 6888888877


Q ss_pred             ccccccchhhhccCCCCcEEeCCCCcccccCCCCCCCCccccEEecccCcCCCCCCcccccCC--CccEEEccCC-cccC
Q 036375          462 SLTGIISEIHFSRLSKLKFLGLSSNSFILNVSSSWIPPFQVQSLNMRSCQLGPSFPSWLKTQQ--GVSFLDFSNA-SISG  538 (1009)
Q Consensus       462 ~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~--~L~~L~ls~n-~i~~  538 (1009)
                      ..........+..++.++...+....+...        ..++.          .....+..++  .++.++++++ .+.+
T Consensus       211 ~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~--------~~l~~----------~~~~~~~~l~~l~l~~l~l~~~~~~~~  272 (570)
T 2z63_A          211 FDSLNVMKTCIQGLAGLEVHRLVLGEFRNE--------GNLEK----------FDKSALEGLCNLTIEEFRLAYLDYYLD  272 (570)
T ss_dssp             CSCTTHHHHHHHTTTTCEEEEEEEEECCCC--------SSCEE----------CCTTTTGGGGGSEEEEEEEEETTEEES
T ss_pred             cccccchhhhhcCccccceeeeccccccCc--------hhhhh----------cchhhhccccccchhhhhhhcchhhhh
Confidence            544333334466677776655543222100        00000          0011111111  2445555555 4444


Q ss_pred             CCCchhhhccCcccEEEeccccccccCCCCCCCCCcCeEeccCCCCCCCCCCCCCCccEEEccCCcCCCcCCchhhcCCC
Q 036375          539 PIPNWFWDISSKLSLLNVSLNQLQGQLPNPLNIAPFADVDFRSNLLEGPIPLPIVEIELLDLSNNHFSGPIPQNISGSMP  618 (1009)
Q Consensus       539 ~~p~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~~l~~l~l~~n~l~~~~~~~~~~L~~L~Ls~n~l~~~ip~~~~~~l~  618 (1009)
                      .+|..+. .+++|+.+++++|.++                                             .+|..+ ..+ 
T Consensus       273 ~~~~~~~-~l~~L~~L~l~~~~l~---------------------------------------------~l~~~~-~~~-  304 (570)
T 2z63_A          273 DIIDLFN-CLTNVSSFSLVSVTIE---------------------------------------------RVKDFS-YNF-  304 (570)
T ss_dssp             CSTTTTG-GGTTCSEEEEESCEEC---------------------------------------------SCCBCC-SCC-
T ss_pred             hchhhhc-CcCcccEEEecCccch---------------------------------------------hhhhhh-ccC-
Confidence            4444443 2344444444444443                                             233322 223 


Q ss_pred             CccEEEccCCcccccCCcccccCCCCCeEEccCCcCCccCcCcccCCCCCCEEECCCCcCcccC--CccccCCCCCCEEE
Q 036375          619 NLIFLSVSGNRLTGKIPGSIGEMQLLQVIDLSRNSISGSISSSIGNCTFLKVLDLSYSSLSGVI--PASLGQLTRLQSLH  696 (1009)
Q Consensus       619 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~--p~~~~~l~~L~~L~  696 (1009)
                      +|++|++++|.+. .+|.  ..+++|+.|++++|.+.+..+.  ..+++|++|++++|++++..  |..+..+++|++|+
T Consensus       305 ~L~~L~l~~n~~~-~l~~--~~l~~L~~L~l~~n~~~~~~~~--~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~  379 (570)
T 2z63_A          305 GWQHLELVNCKFG-QFPT--LKLKSLKRLTFTSNKGGNAFSE--VDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLD  379 (570)
T ss_dssp             CCSEEEEESCBCS-SCCB--CBCSSCCEEEEESCBSCCBCCC--CBCTTCCEEECCSSCCBEEEEEEHHHHTCSCCCEEE
T ss_pred             CccEEeeccCccc-ccCc--ccccccCEEeCcCCcccccccc--ccCCCCCEEeCcCCccCccccccccccccCccCEEE
Confidence            5666666666555 2332  3456677777777776655543  56777777777777777553  56677777888888


Q ss_pred             ccCccccCCCchhhcCCCCCCEEECcCCcccccCchhhhhcCcCCcEEEccCCcccccCCcccCCCCCCCEEEccCCcCC
Q 036375          697 LNNNKLTGNLPSSFQNLTSLETLDLGNNRFSGNIPSLLGNGFVGLRILSLRSNAFSGEIPSKLSNLSSLQVLDLAENNLT  776 (1009)
Q Consensus       697 L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~ip~~l~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~  776 (1009)
                      +++|++++..+ .+..+++|++|++++|.+.+..|...+..+++|+.|++++|.+.+..|..+..+++|++|++++|+++
T Consensus       380 l~~n~l~~~~~-~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~  458 (570)
T 2z63_A          380 LSFNGVITMSS-NFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQ  458 (570)
T ss_dssp             CCSCSEEEEEE-EEETCTTCCEEECTTSEEESCTTSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEG
T ss_pred             CCCCccccccc-cccccCCCCEEEccCCccccccchhhhhcCCCCCEEeCcCCcccccchhhhhcCCcCcEEECcCCcCc
Confidence            88887775433 37778888888888888776655433345788888888888888778888888888888888888887


Q ss_pred             -CCCChhhhhhhhhhhccchhhhhhccccccceeeceEEEeecCCCCCCCCceeEEEccCCccCCCCCccccCcCCCCeE
Q 036375          777 -GSIPGSVGDLKAMAHVQNIVKYLLFGRYRGIYYEENLVINTKGSSKDTPRLFHFIDLSGNNLHGDFPTQLTKLVGLVVL  855 (1009)
Q Consensus       777 -~~~p~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~Ls~N~l~~~~p~~l~~l~~L~~L  855 (1009)
                       +.+|..+..+++|                                       +.|+|++|++++..|..++++++|++|
T Consensus       459 ~~~~p~~~~~l~~L---------------------------------------~~L~l~~n~l~~~~~~~~~~l~~L~~L  499 (570)
T 2z63_A          459 ENFLPDIFTELRNL---------------------------------------TFLDLSQCQLEQLSPTAFNSLSSLQVL  499 (570)
T ss_dssp             GGEECSCCTTCTTC---------------------------------------CEEECTTSCCCEECTTTTTTCTTCCEE
T ss_pred             cccchhhhhcccCC---------------------------------------CEEECCCCccccCChhhhhcccCCCEE
Confidence             5778777777766                                       788999999998889999999999999


Q ss_pred             EccCCcccccCCCCccCCCCCCEEeCCCCcCCCCCcc
Q 036375          856 NLSRNHIGGQIPENISGLHQLASLDLSSNNLSGGIPS  892 (1009)
Q Consensus       856 ~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~  892 (1009)
                      ++++|++++.+|+.|.++++|+.|++++|.+++..|.
T Consensus       500 ~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~~  536 (570)
T 2z63_A          500 NMASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPR  536 (570)
T ss_dssp             ECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTTT
T ss_pred             eCCCCcCCCCCHHHhhcccCCcEEEecCCcccCCCcc
Confidence            9999999999999999999999999999999988764

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=100.00  E-value=1.1e-45  Score=441.16  Aligned_cols=485  Identities=20%  Similarity=0.239  Sum_probs=313.8

Q ss_pred             EEEcccccccccCCccccCCCCCCEEEccCCcccccCchhhhcccCCCEEEcCCCcCCCCCCccccccccccCCCCCCCC
Q 036375          301 ILNFASNKLHGKLPSSVANMTSLTNFDLFDKKVEGGIPSSIARLCYLKEFDLSGNNLTGSLPEILQGTDLCVSSNSPLPS  380 (1009)
Q Consensus       301 ~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~l~~  380 (1009)
                      +.+.+++.++ .+|..+.  ++|++|++++|.+++..|..+.++++|++|++++|.+++..|..+.          .+++
T Consensus         9 ~c~~~~~~l~-~ip~~~~--~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~----------~l~~   75 (549)
T 2z81_A            9 VCDGRSRSFT-SIPSGLT--AAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFY----------SLGS   75 (549)
T ss_dssp             EEECTTSCCS-SCCSCCC--TTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCEECTTTTT----------TCTT
T ss_pred             eEECCCCccc-cccccCC--CCccEEECcCCccCccChhhhhcCCcccEEECCCCCcCccChhhcc----------cccc
Confidence            3455555555 4444433  5666666666666655555566555555555555555544444433          4455


Q ss_pred             CcEEECcCCcCcccCChhhcCCCCCCEEeCcCCcccc-cCCCCCCCCCCCcEEeCCCCcCCCCCC-cccCCCCCCCEEEc
Q 036375          381 LISMRLGNNHLKGKLPEWLSQLENLVELTLSYNLLQG-PIPASLGNLKNLTKLNLPGNQLNGTLP-ETLGSLPELSVLDV  458 (1009)
Q Consensus       381 L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~-~~p~~l~~l~~L~~L~L~~n~l~~~~p-~~l~~l~~L~~L~L  458 (1009)
                      |++|++++|.+++..|..++.+++|++|++++|.+++ ..|..++++++|++|++++|.+.+.+| ..+.++++|++|++
T Consensus        76 L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L  155 (549)
T 2z81_A           76 LEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEI  155 (549)
T ss_dssp             CCEEECTTSCCCSCCHHHHTTCTTCCEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEE
T ss_pred             CCEEECCCCccCccCHHHhccCCCCcEEECCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeec
Confidence            5555555555554444445555555555555555443 123344444445555544444222222 23444444444444


Q ss_pred             cCcccccccchhhhccCCCCcEEeCCCCcccccCCCCCCCCccccEEecccCcCCCCCCcccccCCCccEEEccCCcccC
Q 036375          459 SSNSLTGIISEIHFSRLSKLKFLGLSSNSFILNVSSSWIPPFQVQSLNMRSCQLGPSFPSWLKTQQGVSFLDFSNASISG  538 (1009)
Q Consensus       459 s~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~ls~n~i~~  538 (1009)
                      ++|.+++.                                                 .|..+..+++|++|++++|.+. 
T Consensus       156 ~~n~l~~~-------------------------------------------------~~~~l~~l~~L~~L~l~~n~~~-  185 (549)
T 2z81_A          156 KALSLRNY-------------------------------------------------QSQSLKSIRDIHHLTLHLSESA-  185 (549)
T ss_dssp             EETTCCEE-------------------------------------------------CTTTTTTCSEEEEEEEECSBST-
T ss_pred             cCCccccc-------------------------------------------------ChhhhhccccCceEecccCccc-
Confidence            44444433                                                 3334444444555555555443 


Q ss_pred             CCCchhhhccCcccEEEeccccccccCCCCCCCCCcCeEeccCCCCCCCCCCCCCCccEEEccCCcCCCcCCchh---hc
Q 036375          539 PIPNWFWDISSKLSLLNVSLNQLQGQLPNPLNIAPFADVDFRSNLLEGPIPLPIVEIELLDLSNNHFSGPIPQNI---SG  615 (1009)
Q Consensus       539 ~~p~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~~l~~l~l~~n~l~~~~~~~~~~L~~L~Ls~n~l~~~ip~~~---~~  615 (1009)
                      .+|.++...+++|++|++++|++++......                 .+...+.+|+.|++++|.+.+..+..+   ..
T Consensus       186 ~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~-----------------~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~  248 (549)
T 2z81_A          186 FLLEIFADILSSVRYLELRDTNLARFQFSPL-----------------PVDEVSSPMKKLAFRGSVLTDESFNELLKLLR  248 (549)
T ss_dssp             THHHHHHHSTTTBSEEEEESCBCTTCCCCCC-----------------SSCCCCCCCCEEEEESCEEEHHHHHHHHGGGG
T ss_pred             ccchhhHhhcccccEEEccCCcccccccccc-----------------chhhhhhcccceeccccccchhHHHHHHHHhh
Confidence            3344444445666666666666654311100                 001123556667777666655433322   24


Q ss_pred             CCCCccEEEccCCcccccC------CcccccCCCCCeEEccCCcCCcc-----CcCcccCCCCCCEEECCCCcCcccCCc
Q 036375          616 SMPNLIFLSVSGNRLTGKI------PGSIGEMQLLQVIDLSRNSISGS-----ISSSIGNCTFLKVLDLSYSSLSGVIPA  684 (1009)
Q Consensus       616 ~l~~L~~L~Ls~n~l~~~~------~~~~~~l~~L~~L~Ls~N~l~~~-----~p~~l~~l~~L~~L~Ls~N~l~~~~p~  684 (1009)
                      .+++|+.+++++|.+.+..      ...+..+++|+.|++.++.+...     ++..+...++|+.|++++|++. .+|.
T Consensus       249 ~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~l~~~~~~~~~L~~L~l~~n~l~-~ip~  327 (549)
T 2z81_A          249 YILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVF-LVPC  327 (549)
T ss_dssp             GCTTCCEEEEESCEEECCSCCCCCTTTCCCCCTTCCEEEEESCBCSCGGGSCCCCHHHHHSTTCCEEEEESSCCC-CCCH
T ss_pred             hhccccccccccccccccccccccchhhhhhhcccccccccccccchhhhcccchhhhhhcccceEEEeccCccc-cCCH
Confidence            5677788888887776532      12345677888888888876532     1222344578999999999987 5666


Q ss_pred             cc-cCCCCCCEEEccCccccCCCch---hhcCCCCCCEEECcCCcccccCch--hhhhcCcCCcEEEccCCcccccCCcc
Q 036375          685 SL-GQLTRLQSLHLNNNKLTGNLPS---SFQNLTSLETLDLGNNRFSGNIPS--LLGNGFVGLRILSLRSNAFSGEIPSK  758 (1009)
Q Consensus       685 ~~-~~l~~L~~L~L~~N~l~~~~p~---~~~~l~~L~~L~L~~N~l~~~ip~--~l~~~l~~L~~L~L~~N~l~~~~p~~  758 (1009)
                      .+ ..+++|++|++++|++++.+|.   .+..+++|++|++++|++++ +|.  .....+++|+.|++++|+++ .+|..
T Consensus       328 ~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~-~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~  405 (549)
T 2z81_A          328 SFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRS-MQKTGEILLTLKNLTSLDISRNTFH-PMPDS  405 (549)
T ss_dssp             HHHHHCTTCCEEECCSSCCCHHHHHHHTCTTSSTTCCEEECTTSCCCC-HHHHHHHGGGCTTCCEEECTTCCCC-CCCSC
T ss_pred             HHHhcCccccEEEccCCccccccccchhhhhccccCcEEEccCCcccc-cccchhhhhcCCCCCEEECCCCCCc-cCChh
Confidence            55 5789999999999999887643   37788999999999999984 432  22335999999999999998 68888


Q ss_pred             cCCCCCCCEEEccCCcCCCCCChhhhhhhhhhhccchhhhhhccccccceeeceEEEeecCCCCCCCCceeEEEccCCcc
Q 036375          759 LSNLSSLQVLDLAENNLTGSIPGSVGDLKAMAHVQNIVKYLLFGRYRGIYYEENLVINTKGSSKDTPRLFHFIDLSGNNL  838 (1009)
Q Consensus       759 l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~Ls~N~l  838 (1009)
                      +..+++|++|++++|++++ +|..+.  +                                       .++.|||++|++
T Consensus       406 ~~~~~~L~~L~Ls~N~l~~-l~~~~~--~---------------------------------------~L~~L~Ls~N~l  443 (549)
T 2z81_A          406 CQWPEKMRFLNLSSTGIRV-VKTCIP--Q---------------------------------------TLEVLDVSNNNL  443 (549)
T ss_dssp             CCCCTTCCEEECTTSCCSC-CCTTSC--T---------------------------------------TCSEEECCSSCC
T ss_pred             hcccccccEEECCCCCccc-ccchhc--C---------------------------------------CceEEECCCCCh
Confidence            9999999999999999874 333221  1                                       238999999999


Q ss_pred             CCCCCccccCcCCCCeEEccCCcccccCCCCccCCCCCCEEeCCCCcCCCCCcccccCCCCCCeEeCCCCcceecCCC
Q 036375          839 HGDFPTQLTKLVGLVVLNLSRNHIGGQIPENISGLHQLASLDLSSNNLSGGIPSSLSSLSFLGYINLSRNQLSGKIPF  916 (1009)
Q Consensus       839 ~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~ls~N~l~g~ip~  916 (1009)
                      ++.+    ..+++|++|+|++|+++ .+|+ ...+++|++|||++|++++.+|..++.+++|++|++++|+++|.+|.
T Consensus       444 ~~~~----~~l~~L~~L~Ls~N~l~-~ip~-~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~~  515 (549)
T 2z81_A          444 DSFS----LFLPRLQELYISRNKLK-TLPD-ASLFPVLLVMKISRNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPR  515 (549)
T ss_dssp             SCCC----CCCTTCCEEECCSSCCS-SCCC-GGGCTTCCEEECCSSCCCCCCTTGGGGCTTCCEEECCSSCBCCCHHH
T ss_pred             hhhc----ccCChhcEEECCCCccC-cCCC-cccCccCCEEecCCCccCCcCHHHHhcCcccCEEEecCCCccCCCcc
Confidence            9864    57899999999999999 5665 57899999999999999999999999999999999999999998884

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=100.00  E-value=1.7e-46  Score=452.39  Aligned_cols=451  Identities=21%  Similarity=0.289  Sum_probs=283.7

Q ss_pred             CCccEEEcccccccccCCccccCCCCCCEEEccCCcc------cc------cCchhhhcccCCCEEEcCCCcCCCCCCcc
Q 036375          297 KKIQILNFASNKLHGKLPSSVANMTSLTNFDLFDKKV------EG------GIPSSIARLCYLKEFDLSGNNLTGSLPEI  364 (1009)
Q Consensus       297 ~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~~------~~------~~~~~l~~l~~L~~L~l~~n~l~~~~~~~  364 (1009)
                      .+++.|+++++.+.|.+|+.++++++|++|++++|.+      .+      .+|...  +..|+ ++++.+.+.+.+|..
T Consensus        81 ~~V~~L~L~~~~l~g~lp~~l~~L~~L~~L~Ls~N~~~~~~~~~~~~~~~~~~~~~~--~~~l~-l~l~~~~l~~~~~~~  157 (636)
T 4eco_A           81 GRVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQ--KQKMR-MHYQKTFVDYDPRED  157 (636)
T ss_dssp             CCEEEEECTTSCCEEEECGGGGGCTTCCEEESCCGGGGGTCCSBSTTSBCTTCCHHH--HHHHH-THHHHHHTCCCGGGG
T ss_pred             CCEEEEEecCcccCCcCChHHhcCccceEEECcCCccccCCccccccccccCchHHH--HHHHH-hhHHHhhhccCchhh
Confidence            4677888888888888888888999999999988865      22      344443  45566 777777777666654


Q ss_pred             cccc-------ccccCC--CCCCCCCcEEECc--CCcCcccCChhhcCCCCCCEEeCcCCccccc---------------
Q 036375          365 LQGT-------DLCVSS--NSPLPSLISMRLG--NNHLKGKLPEWLSQLENLVELTLSYNLLQGP---------------  418 (1009)
Q Consensus       365 ~~~~-------~~~~~~--~~~l~~L~~L~L~--~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~---------------  418 (1009)
                      +...       ......  ......++.+.+.  .|.+++ +|..++++++|++|+|++|.+++.               
T Consensus       158 ~~~~~~~l~~~~l~~~~~~~~~~~~l~~l~l~~~~n~l~~-ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~  236 (636)
T 4eco_A          158 FSDLIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNITF-VSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQ  236 (636)
T ss_dssp             SCHHHHHHHHHCTTSCCCCCCCCCCCCTTTTTCCSCEEEE-ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHH
T ss_pred             HHHHHHHHhhcCccccccccccccchhhhhhccccCCCcc-CCHHHhcccCCCEEECcCCccccccccccccccccchhc
Confidence            4310       000000  0011222222232  466776 777788888888888888887775               


Q ss_pred             --CCCCCC--CCCCCcEEeCCCCcCCCCCCcccCCCCCCCEEEccCcc-ccc-ccchhhhccCCCCcEEeCCCCcccccC
Q 036375          419 --IPASLG--NLKNLTKLNLPGNQLNGTLPETLGSLPELSVLDVSSNS-LTG-IISEIHFSRLSKLKFLGLSSNSFILNV  492 (1009)
Q Consensus       419 --~p~~l~--~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~-l~~-~~~~~~~~~l~~L~~L~L~~n~l~~~~  492 (1009)
                        +|..++  ++++|++|++++|.+.+.+|..++++++|++|++++|+ +++ .+|.. +..+..               
T Consensus       237 ~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~l~~~~lp~~-~~~L~~---------------  300 (636)
T 4eco_A          237 QYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDD-WQALAD---------------  300 (636)
T ss_dssp             HHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCEEECTTCTTSCHHHHHHH-HHHHHH---------------
T ss_pred             ccCchhhhhcccCCCCEEEecCCcCCccChHHHhcCCCCCEEECcCCCCCccccchHH-HHhhhc---------------
Confidence              777777  77777777777777777777777777777777777776 665 44442 222200               


Q ss_pred             CCCCCCCccccEEecccCcCCCCCCcccccCCCccEEEccCCcccCCCCchhhhccCcccEEEeccccccccCCCCCCCC
Q 036375          493 SSSWIPPFQVQSLNMRSCQLGPSFPSWLKTQQGVSFLDFSNASISGPIPNWFWDISSKLSLLNVSLNQLQGQLPNPLNIA  572 (1009)
Q Consensus       493 ~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~ls~n~i~~~~p~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~  572 (1009)
                                                 +..+                                                 
T Consensus       301 ---------------------------~~~l-------------------------------------------------  304 (636)
T 4eco_A          301 ---------------------------APVG-------------------------------------------------  304 (636)
T ss_dssp             ---------------------------SGGG-------------------------------------------------
T ss_pred             ---------------------------cccC-------------------------------------------------
Confidence                                       0000                                                 


Q ss_pred             CcCeEeccCCCCCCCCCCCCCCccEEEccCCcCCCcCCc-hhhcCCCCccEEEccCCcccccCCcccccCCCCCeEEccC
Q 036375          573 PFADVDFRSNLLEGPIPLPIVEIELLDLSNNHFSGPIPQ-NISGSMPNLIFLSVSGNRLTGKIPGSIGEMQLLQVIDLSR  651 (1009)
Q Consensus       573 ~l~~l~l~~n~l~~~~~~~~~~L~~L~Ls~n~l~~~ip~-~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~  651 (1009)
                                          ++|+.|++++|.++ .+|. ..+..+++|++|++++|+++|.+| .++.+++|++|++++
T Consensus       305 --------------------~~L~~L~L~~n~l~-~ip~~~~l~~l~~L~~L~L~~N~l~g~ip-~~~~l~~L~~L~L~~  362 (636)
T 4eco_A          305 --------------------EKIQIIYIGYNNLK-TFPVETSLQKMKKLGMLECLYNQLEGKLP-AFGSEIKLASLNLAY  362 (636)
T ss_dssp             --------------------GTCCEEECCSSCCS-SCCCHHHHTTCTTCCEEECCSCCCEEECC-CCEEEEEESEEECCS
T ss_pred             --------------------CCCCEEECCCCcCC-ccCchhhhccCCCCCEEeCcCCcCccchh-hhCCCCCCCEEECCC
Confidence                                12333333333333 3333 123345555555555555555555 555555555555555


Q ss_pred             CcCCccCcCcccCCCC-CCEEECCCCcCcccCCccccCCC--CCCEEEccCccccCCCchhhc-------CCCCCCEEEC
Q 036375          652 NSISGSISSSIGNCTF-LKVLDLSYSSLSGVIPASLGQLT--RLQSLHLNNNKLTGNLPSSFQ-------NLTSLETLDL  721 (1009)
Q Consensus       652 N~l~~~~p~~l~~l~~-L~~L~Ls~N~l~~~~p~~~~~l~--~L~~L~L~~N~l~~~~p~~~~-------~l~~L~~L~L  721 (1009)
                      |+++ .+|..+..+++ |++|++++|+++ .+|..+..++  +|++|++++|++++.+|..+.       .+++|++|++
T Consensus       363 N~l~-~lp~~l~~l~~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~L  440 (636)
T 4eco_A          363 NQIT-EIPANFCGFTEQVENLSFAHNKLK-YIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINL  440 (636)
T ss_dssp             SEEE-ECCTTSEEECTTCCEEECCSSCCS-SCCSCCCTTCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEEC
T ss_pred             Cccc-cccHhhhhhcccCcEEEccCCcCc-ccchhhhhcccCccCEEECcCCcCCCcchhhhcccccccccCCCCCEEEC
Confidence            5555 45555555555 666666666655 4555554433  566666666666655555555       5556666666


Q ss_pred             cCCcccccCchhhhhcCcCCcEEEccCCcccccCCcccCC--------CCCCCEEEccCCcCCCCCChhhh--hhhhhhh
Q 036375          722 GNNRFSGNIPSLLGNGFVGLRILSLRSNAFSGEIPSKLSN--------LSSLQVLDLAENNLTGSIPGSVG--DLKAMAH  791 (1009)
Q Consensus       722 ~~N~l~~~ip~~l~~~l~~L~~L~L~~N~l~~~~p~~l~~--------l~~L~~L~Ls~N~l~~~~p~~~~--~l~~L~~  791 (1009)
                      ++|.++ .+|..++..+++|+.|++++|+++ .+|.....        +++|++|++++|+++ .+|..+.  .+++|  
T Consensus       441 s~N~l~-~lp~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L--  515 (636)
T 4eco_A          441 SNNQIS-KFPKELFSTGSPLSSINLMGNMLT-EIPKNSLKDENENFKNTYLLTSIDLRFNKLT-KLSDDFRATTLPYL--  515 (636)
T ss_dssp             CSSCCC-SCCTHHHHTTCCCSEEECCSSCCS-BCCSSSSEETTEECTTGGGCCEEECCSSCCC-BCCGGGSTTTCTTC--
T ss_pred             cCCccC-cCCHHHHccCCCCCEEECCCCCCC-CcCHHHhccccccccccCCccEEECcCCcCC-ccChhhhhccCCCc--
Confidence            666665 555555544566666666666666 44433222        226777777777777 5666654  55555  


Q ss_pred             ccchhhhhhccccccceeeceEEEeecCCCCCCCCceeEEEccCCccCCCCCccccCcCCCCeEEc------cCCccccc
Q 036375          792 VQNIVKYLLFGRYRGIYYEENLVINTKGSSKDTPRLFHFIDLSGNNLHGDFPTQLTKLVGLVVLNL------SRNHIGGQ  865 (1009)
Q Consensus       792 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L------s~N~l~~~  865 (1009)
                                                           +.|+|++|++++ +|..+.++++|+.|+|      ++|++.+.
T Consensus       516 -------------------------------------~~L~Ls~N~l~~-ip~~~~~l~~L~~L~Ls~N~~ls~N~l~~~  557 (636)
T 4eco_A          516 -------------------------------------VGIDLSYNSFSK-FPTQPLNSSTLKGFGIRNQRDAQGNRTLRE  557 (636)
T ss_dssp             -------------------------------------CEEECCSSCCSS-CCCGGGGCSSCCEEECCSCBCTTCCBCCCC
T ss_pred             -------------------------------------CEEECCCCCCCC-cChhhhcCCCCCEEECCCCcccccCccccc
Confidence                                                 677777777776 7777777777777777      56888889


Q ss_pred             CCCCccCCCCCCEEeCCCCcCCCCCcccccCCCCCCeEeCCCCcceec
Q 036375          866 IPENISGLHQLASLDLSSNNLSGGIPSSLSSLSFLGYINLSRNQLSGK  913 (1009)
Q Consensus       866 ~p~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~ls~N~l~g~  913 (1009)
                      +|..++++++|++|+|++|++ +.+|..+.  ++|++||+++|++...
T Consensus       558 ~p~~l~~l~~L~~L~Ls~N~l-~~ip~~~~--~~L~~L~Ls~N~l~~~  602 (636)
T 4eco_A          558 WPEGITLCPSLTQLQIGSNDI-RKVNEKIT--PNISVLDIKDNPNISI  602 (636)
T ss_dssp             CCTTGGGCSSCCEEECCSSCC-CBCCSCCC--TTCCEEECCSCTTCEE
T ss_pred             ChHHHhcCCCCCEEECCCCcC-CccCHhHh--CcCCEEECcCCCCccc
Confidence            999999999999999999999 67888766  7899999999987643

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=100.00  E-value=1.8e-44  Score=430.50  Aligned_cols=496  Identities=19%  Similarity=0.182  Sum_probs=352.2

Q ss_pred             CEEEcCCCCCCCCcccccccCCCCCccEEEcccccccccCCccccCCCCCCEEEccCCcccccCchhhhcccCCCEEEcC
Q 036375          274 QYLSLAGNNNLSGSCSQLFRGSWKKIQILNFASNKLHGKLPSSVANMTSLTNFDLFDKKVEGGIPSSIARLCYLKEFDLS  353 (1009)
Q Consensus       274 ~~L~L~~n~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~  353 (1009)
                      ...+.+++.+   ..+|..+  .++|++|++++|.+.+..|..++++++|++|++++|.+.+..|..|+++++|++|+++
T Consensus         8 ~~c~~~~~~l---~~ip~~~--~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls   82 (549)
T 2z81_A            8 GVCDGRSRSF---TSIPSGL--TAAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLS   82 (549)
T ss_dssp             SEEECTTSCC---SSCCSCC--CTTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECT
T ss_pred             ceEECCCCcc---ccccccC--CCCccEEECcCCccCccChhhhhcCCcccEEECCCCCcCccChhhccccccCCEEECC
Confidence            3446665532   2334333  3799999999999999889999999999999999999999888999999999999999


Q ss_pred             CCcCCCCCCccccccccccCCCCCCCCCcEEECcCCcCcc-cCChhhcCCCCCCEEeCcCCcccccC-CCCCCCCCCCcE
Q 036375          354 GNNLTGSLPEILQGTDLCVSSNSPLPSLISMRLGNNHLKG-KLPEWLSQLENLVELTLSYNLLQGPI-PASLGNLKNLTK  431 (1009)
Q Consensus       354 ~n~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~-~~~~~l~~l~~L~~L~Ls~n~l~~~~-p~~l~~l~~L~~  431 (1009)
                      +|.+++..|..+.          .+++|++|++++|.+++ ..|..+.++++|++|++++|.+.+.+ +..+.++++|++
T Consensus        83 ~n~l~~~~~~~~~----------~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~  152 (549)
T 2z81_A           83 DNHLSSLSSSWFG----------PLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNE  152 (549)
T ss_dssp             TSCCCSCCHHHHT----------TCTTCCEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEE
T ss_pred             CCccCccCHHHhc----------cCCCCcEEECCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCe
Confidence            9999998888777          79999999999999986 35678999999999999999854444 468999999999


Q ss_pred             EeCCCCcCCCCCCcccCCCCCCCEEEccCcccccccchhhhccCCCCcEEeCCCCcccccCCCCCCCCccccEEecccCc
Q 036375          432 LNLPGNQLNGTLPETLGSLPELSVLDVSSNSLTGIISEIHFSRLSKLKFLGLSSNSFILNVSSSWIPPFQVQSLNMRSCQ  511 (1009)
Q Consensus       432 L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~~~  511 (1009)
                      |++++|.+++..|..+..+++|++|+++.|.+.. ++...+..+++|++|++++|++......                 
T Consensus       153 L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~-~~~~~~~~l~~L~~L~L~~n~l~~~~~~-----------------  214 (549)
T 2z81_A          153 LEIKALSLRNYQSQSLKSIRDIHHLTLHLSESAF-LLEIFADILSSVRYLELRDTNLARFQFS-----------------  214 (549)
T ss_dssp             EEEEETTCCEECTTTTTTCSEEEEEEEECSBSTT-HHHHHHHSTTTBSEEEEESCBCTTCCCC-----------------
T ss_pred             eeccCCcccccChhhhhccccCceEecccCcccc-cchhhHhhcccccEEEccCCcccccccc-----------------
Confidence            9999999999999999999999999999999864 4555567899999999999987542110                 


Q ss_pred             CCCCCCcccccCCCccEEEccCCcccCCCCchhh---hccCcccEEEeccccccccCCCCCCCCCcCeEeccCCCCCCCC
Q 036375          512 LGPSFPSWLKTQQGVSFLDFSNASISGPIPNWFW---DISSKLSLLNVSLNQLQGQLPNPLNIAPFADVDFRSNLLEGPI  588 (1009)
Q Consensus       512 ~~~~~~~~l~~~~~L~~L~ls~n~i~~~~p~~~~---~~~~~L~~L~ls~n~l~~~~~~~~~~~~l~~l~l~~n~l~~~~  588 (1009)
                          .......+++|+.|++++|.+++..+..+.   ..+++++.+++++|.+.+......              .....
T Consensus       215 ----~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~L~~l~l~~~~~~~~~~~~~--------------~~~~~  276 (549)
T 2z81_A          215 ----PLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDCTLNGLGDFNP--------------SESDV  276 (549)
T ss_dssp             ----CCSSCCCCCCCCEEEEESCEEEHHHHHHHHGGGGGCTTCCEEEEESCEEECCSCCCC--------------CTTTC
T ss_pred             ----ccchhhhhhcccceeccccccchhHHHHHHHHhhhhccccccccccccccccccccc--------------cchhh
Confidence                011123456788888888887766554443   234567777777777665311100              00011


Q ss_pred             CCCCCCccEEEccCCcCCCcCCchhhcCCCCccEEEccCCcccccCCcccccCCCCCeEEccCCcCCccCcCcc-cCCCC
Q 036375          589 PLPIVEIELLDLSNNHFSGPIPQNISGSMPNLIFLSVSGNRLTGKIPGSIGEMQLLQVIDLSRNSISGSISSSI-GNCTF  667 (1009)
Q Consensus       589 ~~~~~~L~~L~Ls~n~l~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l-~~l~~  667 (1009)
                      +..+.+++.|++.++.+.....   +                 ...+..+...++|+.|++++|++. .+|..+ ..+++
T Consensus       277 ~~~l~~L~~L~l~~~~i~~~~~---~-----------------~~l~~~~~~~~~L~~L~l~~n~l~-~ip~~~~~~l~~  335 (549)
T 2z81_A          277 VSELGKVETVTIRRLHIPQFYL---F-----------------YDLSTVYSLLEKVKRITVENSKVF-LVPCSFSQHLKS  335 (549)
T ss_dssp             CCCCTTCCEEEEESCBCSCGGG---S-----------------CCCCHHHHHSTTCCEEEEESSCCC-CCCHHHHHHCTT
T ss_pred             hhhhcccccccccccccchhhh---c-----------------ccchhhhhhcccceEEEeccCccc-cCCHHHHhcCcc
Confidence            1223455555555554331100   0                 011122233455666666666665 334333 45666


Q ss_pred             CCEEECCCCcCcccCC---ccccCCCCCCEEEccCccccCCCc--hhhcCCCCCCEEECcCCcccccCchhhhhcCcCCc
Q 036375          668 LKVLDLSYSSLSGVIP---ASLGQLTRLQSLHLNNNKLTGNLP--SSFQNLTSLETLDLGNNRFSGNIPSLLGNGFVGLR  742 (1009)
Q Consensus       668 L~~L~Ls~N~l~~~~p---~~~~~l~~L~~L~L~~N~l~~~~p--~~~~~l~~L~~L~L~~N~l~~~ip~~l~~~l~~L~  742 (1009)
                      |++|++++|++++.+|   ..++.+++|++|++++|++++..+  ..+..+++|++|++++|+++ .+|..+. .+++|+
T Consensus       336 L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~-~~~~L~  413 (549)
T 2z81_A          336 LEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFH-PMPDSCQ-WPEKMR  413 (549)
T ss_dssp             CCEEECCSSCCCHHHHHHHTCTTSSTTCCEEECTTSCCCCHHHHHHHGGGCTTCCEEECTTCCCC-CCCSCCC-CCTTCC
T ss_pred             ccEEEccCCccccccccchhhhhccccCcEEEccCCcccccccchhhhhcCCCCCEEECCCCCCc-cCChhhc-cccccc
Confidence            6666666666665543   235566666666666666664322  34666677777777777666 5666554 366777


Q ss_pred             EEEccCCcccccCCcccCCCCCCCEEEccCCcCCCCCChhhhhhhhhhhccchhhhhhccccccceeeceEEEeecCCCC
Q 036375          743 ILSLRSNAFSGEIPSKLSNLSSLQVLDLAENNLTGSIPGSVGDLKAMAHVQNIVKYLLFGRYRGIYYEENLVINTKGSSK  822 (1009)
Q Consensus       743 ~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  822 (1009)
                      .|++++|+++ .+|..+  .++|++||+++|++++.+    ..++.|                                 
T Consensus       414 ~L~Ls~N~l~-~l~~~~--~~~L~~L~Ls~N~l~~~~----~~l~~L---------------------------------  453 (549)
T 2z81_A          414 FLNLSSTGIR-VVKTCI--PQTLEVLDVSNNNLDSFS----LFLPRL---------------------------------  453 (549)
T ss_dssp             EEECTTSCCS-CCCTTS--CTTCSEEECCSSCCSCCC----CCCTTC---------------------------------
T ss_pred             EEECCCCCcc-cccchh--cCCceEEECCCCChhhhc----ccCChh---------------------------------
Confidence            7777777765 333333  257788888888877643    233333                                 


Q ss_pred             CCCCceeEEEccCCccCCCCCccccCcCCCCeEEccCCcccccCCCCccCCCCCCEEeCCCCcCCCCCc
Q 036375          823 DTPRLFHFIDLSGNNLHGDFPTQLTKLVGLVVLNLSRNHIGGQIPENISGLHQLASLDLSSNNLSGGIP  891 (1009)
Q Consensus       823 ~~~~~l~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip  891 (1009)
                            +.|||++|+++ .+|. ...+++|++|+|++|++++.+|+.++.+++|+.|++++|.+++..|
T Consensus       454 ------~~L~Ls~N~l~-~ip~-~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~  514 (549)
T 2z81_A          454 ------QELYISRNKLK-TLPD-ASLFPVLLVMKISRNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP  514 (549)
T ss_dssp             ------CEEECCSSCCS-SCCC-GGGCTTCCEEECCSSCCCCCCTTGGGGCTTCCEEECCSSCBCCCHH
T ss_pred             ------cEEECCCCccC-cCCC-cccCccCCEEecCCCccCCcCHHHHhcCcccCEEEecCCCccCCCc
Confidence                  77888888887 5665 5678999999999999999999999999999999999999998877

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=100.00  E-value=6e-42  Score=417.02  Aligned_cols=523  Identities=23%  Similarity=0.229  Sum_probs=337.4

Q ss_pred             CCcEEECCCCCCCCCchhhhhcCCCCcEEEccCCcCcccCCcccCCCCCCCEEEcCCCCCCCCcccccccCCCCCccEEE
Q 036375          224 SPAVLDLSLNHFNSLFPNWLVNISTLVYVDLSDCDLYGRIPIGFGELPNLQYLSLAGNNNLSGSCSQLFRGSWKKIQILN  303 (1009)
Q Consensus       224 ~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~~~~~L~~L~  303 (1009)
                      ++++|||++|++++..|..|.++++|++|+|++|++.+..|.+|.++++|++|+|++|+                     
T Consensus        53 ~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~---------------------  111 (635)
T 4g8a_A           53 STKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNP---------------------  111 (635)
T ss_dssp             TCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCC---------------------
T ss_pred             CCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCc---------------------
Confidence            45555555555555544555555555555555555544444444444444444444442                     


Q ss_pred             cccccccccCCccccCCCCCCEEEccCCcccccCchhhhcccCCCEEEcCCCcCCCCCCccccccccccCCCCCCCCCcE
Q 036375          304 FASNKLHGKLPSSVANMTSLTNFDLFDKKVEGGIPSSIARLCYLKEFDLSGNNLTGSLPEILQGTDLCVSSNSPLPSLIS  383 (1009)
Q Consensus       304 l~~n~l~~~~p~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~l~~L~~  383 (1009)
                           +.+..+..|.++++|++|++++|.+++..+..|++                                  +++|++
T Consensus       112 -----l~~l~~~~f~~L~~L~~L~Ls~N~l~~l~~~~~~~----------------------------------L~~L~~  152 (635)
T 4g8a_A          112 -----IQSLALGAFSGLSSLQKLVAVETNLASLENFPIGH----------------------------------LKTLKE  152 (635)
T ss_dssp             -----CCEECGGGGTTCTTCCEEECTTSCCCCSTTCCCTT----------------------------------CTTCCE
T ss_pred             -----CCCCCHHHhcCCCCCCEEECCCCcCCCCChhhhhc----------------------------------CcccCe
Confidence                 23223334455555555555555554433333444                                  555555


Q ss_pred             EECcCCcCcc-cCChhhcCCCCCCEEeCcCCcccccCCCCCCCCCCC----cEEeCCCCcCCCCCCcccCCCCCCCEEEc
Q 036375          384 MRLGNNHLKG-KLPEWLSQLENLVELTLSYNLLQGPIPASLGNLKNL----TKLNLPGNQLNGTLPETLGSLPELSVLDV  458 (1009)
Q Consensus       384 L~L~~n~l~~-~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L----~~L~L~~n~l~~~~p~~l~~l~~L~~L~L  458 (1009)
                      |++++|.+++ ..|..+..+++|++|++++|++++..+..+..+.++    ..++++.|.+....+. ......++.+++
T Consensus       153 L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~L~~l~~~~~~~~ls~n~l~~i~~~-~~~~~~~~~l~l  231 (635)
T 4g8a_A          153 LNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPG-AFKEIRLHKLTL  231 (635)
T ss_dssp             EECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCCEEECTTCCCCEECTT-TTTTCEEEEEEE
T ss_pred             eccccCccccCCCchhhccchhhhhhcccCccccccccccccchhhhhhhhhhhhcccCcccccCcc-cccchhhhhhhh
Confidence            5555555543 245566667777777777777766666655544333    3567777777644333 333445677777


Q ss_pred             cCcccccccchhhhccCCCCcEEeCCCCcccccCCCCCCCCccccEEecccCcCCCCCCcccccCCCccEEEccCCcccC
Q 036375          459 SSNSLTGIISEIHFSRLSKLKFLGLSSNSFILNVSSSWIPPFQVQSLNMRSCQLGPSFPSWLKTQQGVSFLDFSNASISG  538 (1009)
Q Consensus       459 s~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~ls~n~i~~  538 (1009)
                      .+|.....+....+..+..++...+..+......                  .+.......+.....+...++..+....
T Consensus       232 ~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~------------------~l~~~~~~~~~~~~~l~~~~l~~~~~~~  293 (635)
T 4g8a_A          232 RNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEG------------------NLEKFDKSALEGLCNLTIEEFRLAYLDY  293 (635)
T ss_dssp             ESCCSSHHHHHHHHHTTTTCEEEEEEEECCTTSC------------------CCSCCCTTTTGGGGGSEEEEEEEECCCS
T ss_pred             hcccccccccchhhcCCccccccccccccccccc------------------ccccccccccccccchhhhhhhhhhhcc
Confidence            7776655455555667777766555433221100                  0001111112222222222222111110


Q ss_pred             CCCchhhhccCcccEEEeccccccccCCCCCCCCCcCeEeccCCCCCCCCCCCCCCccEEEccCCcCCCcCCchhhcCCC
Q 036375          539 PIPNWFWDISSKLSLLNVSLNQLQGQLPNPLNIAPFADVDFRSNLLEGPIPLPIVEIELLDLSNNHFSGPIPQNISGSMP  618 (1009)
Q Consensus       539 ~~p~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~~l~~l~l~~n~l~~~~~~~~~~L~~L~Ls~n~l~~~ip~~~~~~l~  618 (1009)
                      ...                     + ++.                    ......+++.+++.++.+.+. +.  +....
T Consensus       294 ~~~---------------------~-~~~--------------------~~~~~~~l~~l~~~~~~~~~~-~~--~~~~~  328 (635)
T 4g8a_A          294 YLD---------------------G-IID--------------------LFNCLTNVSSFSLVSVTIERV-KD--FSYNF  328 (635)
T ss_dssp             CEE---------------------E-CTT--------------------TTGGGTTCSEEEEESCEEEEC-GG--GGSCC
T ss_pred             ccc---------------------c-hhh--------------------hhhhhcccccccccccccccc-cc--cccch
Confidence            000                     0 000                    000123455555555554422 21  23456


Q ss_pred             CccEEEccCCcccccCCcccccCCCCCeEEccCCcCCccCcCcccCCCCCCEEECCCCcCcc--cCCccccCCCCCCEEE
Q 036375          619 NLIFLSVSGNRLTGKIPGSIGEMQLLQVIDLSRNSISGSISSSIGNCTFLKVLDLSYSSLSG--VIPASLGQLTRLQSLH  696 (1009)
Q Consensus       619 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~--~~p~~~~~l~~L~~L~  696 (1009)
                      .++.|++.+|.+.+..+.   .+..|+.+++.+|.+...  .....+++|+.|++++|.+..  ..+..+..+.+|+.++
T Consensus       329 ~L~~L~l~~~~~~~~~~~---~l~~L~~l~l~~n~~~~~--~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~  403 (635)
T 4g8a_A          329 GWQHLELVNCKFGQFPTL---KLKSLKRLTFTSNKGGNA--FSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTISLKYLD  403 (635)
T ss_dssp             CCSEEEEESCEESSCCCC---BCTTCCEEEEESCCSCCB--CCCCBCTTCCEEECCSSCCBEEEECCHHHHSCSCCCEEE
T ss_pred             hhhhhhcccccccCcCcc---cchhhhhcccccccCCCC--cccccccccccchhhccccccccccccchhhhhhhhhhh
Confidence            778888888877755443   356788888888877643  234578889999999888853  3556667788899999


Q ss_pred             ccCccccCCCchhhcCCCCCCEEECcCCcccccCchhhhhcCcCCcEEEccCCcccccCCcccCCCCCCCEEEccCCcCC
Q 036375          697 LNNNKLTGNLPSSFQNLTSLETLDLGNNRFSGNIPSLLGNGFVGLRILSLRSNAFSGEIPSKLSNLSSLQVLDLAENNLT  776 (1009)
Q Consensus       697 L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~ip~~l~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~  776 (1009)
                      +..|.... .+..+..+++|+.+++..|......+...+..+++++.++++.|.+.+..+..+..+++|+.|++++|++.
T Consensus       404 ~~~~~~~~-~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~l~~l~~l~ls~n~l~~~~~~~~~~~~~L~~L~Ls~N~~~  482 (635)
T 4g8a_A          404 LSFNGVIT-MSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQ  482 (635)
T ss_dssp             CCSCSEEE-ECSCCTTCTTCCEEECTTSEEESTTSSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEG
T ss_pred             cccccccc-ccccccccccccchhhhhccccccccccccccccccccccccccccccccccccccchhhhhhhhhhcccc
Confidence            99888774 45567888999999999888887777666667889999999999999888888899999999999999754


Q ss_pred             -CCCChhhhhhhhhhhccchhhhhhccccccceeeceEEEeecCCCCCCCCceeEEEccCCccCCCCCccccCcCCCCeE
Q 036375          777 -GSIPGSVGDLKAMAHVQNIVKYLLFGRYRGIYYEENLVINTKGSSKDTPRLFHFIDLSGNNLHGDFPTQLTKLVGLVVL  855 (1009)
Q Consensus       777 -~~~p~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~Ls~N~l~~~~p~~l~~l~~L~~L  855 (1009)
                       +.+|..+..+++|                                       +.|||++|++++.+|..|+++++|++|
T Consensus       483 ~~~~~~~~~~l~~L---------------------------------------~~L~Ls~N~L~~l~~~~f~~l~~L~~L  523 (635)
T 4g8a_A          483 ENFLPDIFTELRNL---------------------------------------TFLDLSQCQLEQLSPTAFNSLSSLQVL  523 (635)
T ss_dssp             GGEECSCCTTCTTC---------------------------------------CEEECTTSCCCEECTTTTTTCTTCCEE
T ss_pred             cccCchhhhhcccc---------------------------------------CEEECCCCccCCcChHHHcCCCCCCEE
Confidence             4567777777766                                       889999999999999999999999999


Q ss_pred             EccCCcccccCCCCccCCCCCCEEeCCCCcCCCCCcccccCC-CCCCeEeCCCCcceecCC
Q 036375          856 NLSRNHIGGQIPENISGLHQLASLDLSSNNLSGGIPSSLSSL-SFLGYINLSRNQLSGKIP  915 (1009)
Q Consensus       856 ~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l-~~L~~L~ls~N~l~g~ip  915 (1009)
                      +|++|+|++.+|..|+++++|++|||++|+|++.+|+.+..+ ++|++|++++|++++...
T Consensus       524 ~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~~L~~L~L~~Np~~C~C~  584 (635)
T 4g8a_A          524 NMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCE  584 (635)
T ss_dssp             ECTTSCCCBCCCGGGTTCTTCCEEECTTSCCCBCCSSCTTCCCTTCCEEECTTCCBCCSGG
T ss_pred             ECCCCcCCCCChhHHhCCCCCCEEECCCCcCCCCCHHHHHhhhCcCCEEEeeCCCCcccCC
Confidence            999999999999999999999999999999999999999988 689999999999987543

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=100.00  E-value=1.3e-43  Score=419.86  Aligned_cols=463  Identities=18%  Similarity=0.192  Sum_probs=287.6

Q ss_pred             CEEEccCCcccccCchhhhcccCCCEEEcCCCcCCCCCCccccccccccCCCCCCCCCcEEECcCCcCcccCChhhcCCC
Q 036375          324 TNFDLFDKKVEGGIPSSIARLCYLKEFDLSGNNLTGSLPEILQGTDLCVSSNSPLPSLISMRLGNNHLKGKLPEWLSQLE  403 (1009)
Q Consensus       324 ~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~  403 (1009)
                      +++++++|.++ .+|..+.  ++|++|++++|.+++..|..+.          .+++|++|++++|.+++..|..|..++
T Consensus         3 ~~l~ls~n~l~-~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~----------~l~~L~~L~Ls~n~l~~~~~~~~~~l~   69 (520)
T 2z7x_B            3 FLVDRSKNGLI-HVPKDLS--QKTTILNISQNYISELWTSDIL----------SLSKLRILIISHNRIQYLDISVFKFNQ   69 (520)
T ss_dssp             CEEECTTSCCS-SCCCSCC--TTCSEEECCSSCCCCCCHHHHT----------TCTTCCEEECCSSCCCEEEGGGGTTCT
T ss_pred             ceEecCCCCcc-ccccccc--ccccEEECCCCcccccChhhcc----------ccccccEEecCCCccCCcChHHhhccc
Confidence            46777777777 4665554  6777777777777766666665          577777777777777766677777777


Q ss_pred             CCCEEeCcCCcccccCCCCCCCCCCCcEEeCCCCcCCC-CCCcccCCCCCCCEEEccCcccccccchhhhccCCCC--cE
Q 036375          404 NLVELTLSYNLLQGPIPASLGNLKNLTKLNLPGNQLNG-TLPETLGSLPELSVLDVSSNSLTGIISEIHFSRLSKL--KF  480 (1009)
Q Consensus       404 ~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~-~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L--~~  480 (1009)
                      +|++|++++|+++ .+|..  .+++|++|++++|.+++ .+|..++++++|++|++++|.+++    ..+..+++|  ++
T Consensus        70 ~L~~L~Ls~N~l~-~lp~~--~l~~L~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~----~~~~~l~~L~L~~  142 (520)
T 2z7x_B           70 ELEYLDLSHNKLV-KISCH--PTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEK----SSVLPIAHLNISK  142 (520)
T ss_dssp             TCCEEECCSSCCC-EEECC--CCCCCSEEECCSSCCSSCCCCGGGGGCTTCCEEEEEESSCCG----GGGGGGTTSCEEE
T ss_pred             CCCEEecCCCcee-ecCcc--ccCCccEEeccCCccccccchhhhccCCcceEEEecCcccch----hhccccccceeeE
Confidence            7777777777777 34444  67777777777777765 356677777777777777777664    135555555  66


Q ss_pred             EeCCCCcccccCCCCCCCCccccEEecccCcCCCCCCcccccCC-CccEEEccCCcccCCCCchhhhccCcccEEEeccc
Q 036375          481 LGLSSNSFILNVSSSWIPPFQVQSLNMRSCQLGPSFPSWLKTQQ-GVSFLDFSNASISGPIPNWFWDISSKLSLLNVSLN  559 (1009)
Q Consensus       481 L~L~~n~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~-~L~~L~ls~n~i~~~~p~~~~~~~~~L~~L~ls~n  559 (1009)
                      |++++|.+..                      .+..|..+..+. ....+++++|.+.+.++......+++|+.+++++|
T Consensus       143 L~l~~n~l~~----------------------~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n  200 (520)
T 2z7x_B          143 VLLVLGETYG----------------------EKEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCV  200 (520)
T ss_dssp             EEEEECTTTT----------------------SSCCTTTTTTCCEEEEEEECCSSSCCCCCCCCCCTTCSEEEECCEEEC
T ss_pred             EEeecccccc----------------------cccccccccccccceEEEEeccCcchhhhhhhhhhcccceeecccccc
Confidence            6665554410                      223333333332 22234455555555444444334444444444444


Q ss_pred             cccccCCCCCCCCCcCeEeccCCCCCCCCCCCCCCccEEEccCCcCCCcCCchhhcCCCCccEEEccCCcccccCCcccc
Q 036375          560 QLQGQLPNPLNIAPFADVDFRSNLLEGPIPLPIVEIELLDLSNNHFSGPIPQNISGSMPNLIFLSVSGNRLTGKIPGSIG  639 (1009)
Q Consensus       560 ~l~~~~~~~~~~~~l~~l~l~~n~l~~~~~~~~~~L~~L~Ls~n~l~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~  639 (1009)
                      .-.....                                     .+.+.+|  .+..+++|+.|++++|.+++..+..+.
T Consensus       201 ~~~~~~~-------------------------------------~~~~~~~--~l~~l~~L~~L~l~~~~l~~~~~~~~~  241 (520)
T 2z7x_B          201 LEDNKCS-------------------------------------YFLSILA--KLQTNPKLSNLTLNNIETTWNSFIRIL  241 (520)
T ss_dssp             CSTTTTH-------------------------------------HHHHHHH--GGGGCTTCCEEEEEEEEEEHHHHHHHH
T ss_pred             ccccccc-------------------------------------eeecchh--hhccccchhhccccccccCHHHHHHHH
Confidence            3000000                                     0222222  223455555555555555432211111


Q ss_pred             ---cCCCCCeEEccCCcCCccCcCcc-----cCCCCCCEEECCCCcCcccCC-ccccCC---CCCCEEEccCccccCCCc
Q 036375          640 ---EMQLLQVIDLSRNSISGSISSSI-----GNCTFLKVLDLSYSSLSGVIP-ASLGQL---TRLQSLHLNNNKLTGNLP  707 (1009)
Q Consensus       640 ---~l~~L~~L~Ls~N~l~~~~p~~l-----~~l~~L~~L~Ls~N~l~~~~p-~~~~~l---~~L~~L~L~~N~l~~~~p  707 (1009)
                         ..++|++|++++|+++|.+|..+     ..+++|+.+++++|.+  .+| ..+..+   .+|+.|++++|.+.... 
T Consensus       242 ~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~~l~~L~~l~l~~n~~--~~p~~~~~~~~~~~~L~~L~l~~n~l~~~~-  318 (520)
T 2z7x_B          242 QLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVF--GFPQSYIYEIFSNMNIKNFTVSGTRMVHML-  318 (520)
T ss_dssp             HHHHTSSCSEEEEEEEEEESCCCCCCCCCCSCCCCEEEEEEEEECCC--CSCTHHHHHHHHTCCCSEEEEESSCCCCCC-
T ss_pred             HHhhhCcccEEEeecccccCccccchhhcccccCceeEeccccccce--ecchhhhhcccccCceeEEEcCCCcccccc-
Confidence               13456666666666666666665     6666666666666666  333 333333   45666666666665321 


Q ss_pred             hhhcCCCCCCEEECcCCcccccCchhhhhcCcCCcEEEccCCcccc--cCCcccCCCCCCCEEEccCCcCCCCCChh-hh
Q 036375          708 SSFQNLTSLETLDLGNNRFSGNIPSLLGNGFVGLRILSLRSNAFSG--EIPSKLSNLSSLQVLDLAENNLTGSIPGS-VG  784 (1009)
Q Consensus       708 ~~~~~l~~L~~L~L~~N~l~~~ip~~l~~~l~~L~~L~L~~N~l~~--~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~-~~  784 (1009)
                       .+..+++|++|++++|++++.+|..+. .+++|+.|++++|++++  .+|..+..+++|++|++++|++++.+|.. +.
T Consensus       319 -~~~~l~~L~~L~Ls~n~l~~~~~~~~~-~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~  396 (520)
T 2z7x_B          319 -CPSKISPFLHLDFSNNLLTDTVFENCG-HLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCS  396 (520)
T ss_dssp             -CCSSCCCCCEEECCSSCCCTTTTTTCC-CCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGCSCC
T ss_pred             -chhhCCcccEEEeECCccChhhhhhhc-cCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCcccccchhc
Confidence             124566677777777777666666554 36677777777777665  45566677777777777777777655543 44


Q ss_pred             hhhhhhhccchhhhhhccccccceeeceEEEeecCCCCCCCCceeEEEccCCccCCCCCccccCcCCCCeEEccCCcccc
Q 036375          785 DLKAMAHVQNIVKYLLFGRYRGIYYEENLVINTKGSSKDTPRLFHFIDLSGNNLHGDFPTQLTKLVGLVVLNLSRNHIGG  864 (1009)
Q Consensus       785 ~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~  864 (1009)
                      .++.|                                       +.|+|++|++++.+|..+.  ++|+.|+|++|+++ 
T Consensus       397 ~l~~L---------------------------------------~~L~Ls~N~l~~~~~~~l~--~~L~~L~Ls~N~l~-  434 (520)
T 2z7x_B          397 WTKSL---------------------------------------LSLNMSSNILTDTIFRCLP--PRIKVLDLHSNKIK-  434 (520)
T ss_dssp             CCTTC---------------------------------------CEEECCSSCCCGGGGGSCC--TTCCEEECCSSCCC-
T ss_pred             cCccC---------------------------------------CEEECcCCCCCcchhhhhc--ccCCEEECCCCccc-
Confidence            44443                                       6777777777777776664  67888889988888 


Q ss_pred             cCCCCccCCCCCCEEeCCCCcCCCCCccc-ccCCCCCCeEeCCCCcceecCC
Q 036375          865 QIPENISGLHQLASLDLSSNNLSGGIPSS-LSSLSFLGYINLSRNQLSGKIP  915 (1009)
Q Consensus       865 ~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~-l~~l~~L~~L~ls~N~l~g~ip  915 (1009)
                      .+|..+..+++|++|++++|++++ +|.. +..+++|++|++++|++++.+|
T Consensus       435 ~ip~~~~~l~~L~~L~L~~N~l~~-l~~~~~~~l~~L~~L~l~~N~~~c~c~  485 (520)
T 2z7x_B          435 SIPKQVVKLEALQELNVASNQLKS-VPDGIFDRLTSLQKIWLHTNPWDCSCP  485 (520)
T ss_dssp             CCCGGGGGCTTCCEEECCSSCCCC-CCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred             ccchhhhcCCCCCEEECCCCcCCc-cCHHHhccCCcccEEECcCCCCcccCC
Confidence            677777788999999999999985 5554 8888999999999999988765

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=100.00  E-value=3.4e-43  Score=428.95  Aligned_cols=459  Identities=19%  Similarity=0.265  Sum_probs=247.6

Q ss_pred             CCccEEEcccccccccCCccccCCCCCCEEEc-cCCcccccCchhhhcc---------cCCCE------EE-cCCCcCCC
Q 036375          297 KKIQILNFASNKLHGKLPSSVANMTSLTNFDL-FDKKVEGGIPSSIARL---------CYLKE------FD-LSGNNLTG  359 (1009)
Q Consensus       297 ~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l-~~n~~~~~~~~~l~~l---------~~L~~------L~-l~~n~l~~  359 (1009)
                      .+++.|+|+++.+.|.+|+.++++++|++|++ ++|.+.|..|......         ..++.      ++ .....+.+
T Consensus       323 ~~V~~L~Ls~~~L~G~ip~~l~~L~~L~~LdLss~N~lsG~~~~~~~~~~~~l~~~~l~~lr~~~~~~~l~~~~~~~~s~  402 (876)
T 4ecn_A          323 GRVTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSD  402 (876)
T ss_dssp             SCEEEEECTTTCCEEEECGGGGGCTTCCEEESCCTTHHHHTTCBTTBCCCSSCCHHHHHHHHTHHHHHHTCCCGGGGSCH
T ss_pred             CCEEEEECccCCCCCcCchHHhccccceEeeecccccccccccccccccccccchhHHHHHHHhhhhhhhccCcchhhhH
Confidence            57888888888888888888888888888888 7777776633211000         00000      00 00000000


Q ss_pred             CCCcccccc-ccccCCCCCCCCCcEEECcC--CcCcccCChhhcCCCCCCEEeCcCCcccc-----------------cC
Q 036375          360 SLPEILQGT-DLCVSSNSPLPSLISMRLGN--NHLKGKLPEWLSQLENLVELTLSYNLLQG-----------------PI  419 (1009)
Q Consensus       360 ~~~~~~~~~-~~~~~~~~~l~~L~~L~L~~--n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~-----------------~~  419 (1009)
                      ..+..+... ............++.+.+..  |.+++ +|..++++++|++|+|++|.+++                 .+
T Consensus       403 l~~~~l~~~~~~~~i~~~~~l~l~~l~l~~~~N~L~~-IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~i  481 (876)
T 4ecn_A          403 LLQDAINRNPEMKPIKKDSRISLKDTQIGNLTNRITF-ISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYE  481 (876)
T ss_dssp             HHHHHHHTCTTSCCCCCCCCCCCCTTTTTCCSCEEEE-ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHT
T ss_pred             HHHHHhhhCccccccccccccchhhceeccccCcccc-hhHHHhcCCCCCEEECcCCcCCCCcccccccccccccccccC
Confidence            000000000 00000001222344444443  77776 78888888888888888888887                 37


Q ss_pred             CCCCC--CCCCCcEEeCCCCcCCCCCCcccCCCCCCCEEEccCcc-ccc-ccchhhhccCCCCcEEeCCCCcccccCCCC
Q 036375          420 PASLG--NLKNLTKLNLPGNQLNGTLPETLGSLPELSVLDVSSNS-LTG-IISEIHFSRLSKLKFLGLSSNSFILNVSSS  495 (1009)
Q Consensus       420 p~~l~--~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~-l~~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~  495 (1009)
                      |..++  ++++|++|+|++|.+.+.+|..+.++++|++|++++|+ +++ .+|.. +..++                   
T Consensus       482 P~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N~~lsg~~iP~~-i~~L~-------------------  541 (876)
T 4ecn_A          482 NEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKAD-WTRLA-------------------  541 (876)
T ss_dssp             TSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCEEECTTCTTSCHHHHHHH-HHHHH-------------------
T ss_pred             ChhhhhccCCCCCEEECcCCCCCccChHHHhCCCCCCEEECcCCCCcccccchHH-HHhhh-------------------
Confidence            77766  78888888888888777788778888888888888887 766 55542 33222                   


Q ss_pred             CCCCccccEEecccCcCCCCCCcccccCCCccEEEccCCcccCCCCc--hhhhccCcccEEEeccccccccCCCCCCCCC
Q 036375          496 WIPPFQVQSLNMRSCQLGPSFPSWLKTQQGVSFLDFSNASISGPIPN--WFWDISSKLSLLNVSLNQLQGQLPNPLNIAP  573 (1009)
Q Consensus       496 ~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~ls~n~i~~~~p~--~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~~  573 (1009)
                                            ..+..+++|+.|++++|+++ .+|.  .+. .+                         
T Consensus       542 ----------------------~~~~~l~~L~~L~Ls~N~L~-~ip~~~~l~-~L-------------------------  572 (876)
T 4ecn_A          542 ----------------------DDEDTGPKIQIFYMGYNNLE-EFPASASLQ-KM-------------------------  572 (876)
T ss_dssp             ----------------------HCTTTTTTCCEEECCSSCCC-BCCCHHHHT-TC-------------------------
T ss_pred             ----------------------hcccccCCccEEEeeCCcCC-ccCChhhhh-cC-------------------------
Confidence                                  00122234444444444444 3443  222 11                         


Q ss_pred             cCeEeccCCCCCCCCCCCCCCccEEEccCCcCCCcCCchhhcCCCCccEEEccCCcccccCCcccccCCC-CCeEEccCC
Q 036375          574 FADVDFRSNLLEGPIPLPIVEIELLDLSNNHFSGPIPQNISGSMPNLIFLSVSGNRLTGKIPGSIGEMQL-LQVIDLSRN  652 (1009)
Q Consensus       574 l~~l~l~~n~l~~~~~~~~~~L~~L~Ls~n~l~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~-L~~L~Ls~N  652 (1009)
                                         ++|+.|++++|.++ .+|  .+..+++|++|++++|+++ .+|..+.++++ |+.|++++|
T Consensus       573 -------------------~~L~~L~Ls~N~l~-~lp--~~~~L~~L~~L~Ls~N~l~-~lp~~l~~l~~~L~~L~Ls~N  629 (876)
T 4ecn_A          573 -------------------VKLGLLDCVHNKVR-HLE--AFGTNVKLTDLKLDYNQIE-EIPEDFCAFTDQVEGLGFSHN  629 (876)
T ss_dssp             -------------------TTCCEEECTTSCCC-BCC--CCCTTSEESEEECCSSCCS-CCCTTSCEECTTCCEEECCSS
T ss_pred             -------------------CCCCEEECCCCCcc-cch--hhcCCCcceEEECcCCccc-cchHHHhhccccCCEEECcCC
Confidence                               23333333444333 344  2334555555555555555 45555555665 666666666


Q ss_pred             cCCccCcCcccCCCC--CCEEECCCCcCcccCCccc---c--CCCCCCEEEccCccccCCCchh-hcCCCCCCEEECcCC
Q 036375          653 SISGSISSSIGNCTF--LKVLDLSYSSLSGVIPASL---G--QLTRLQSLHLNNNKLTGNLPSS-FQNLTSLETLDLGNN  724 (1009)
Q Consensus       653 ~l~~~~p~~l~~l~~--L~~L~Ls~N~l~~~~p~~~---~--~l~~L~~L~L~~N~l~~~~p~~-~~~l~~L~~L~L~~N  724 (1009)
                      +++ .+|..+..++.  |+.|++++|++.+.+|...   .  .+++|+.|++++|+++ .+|.. +..+++|+.|+|++|
T Consensus       630 ~L~-~lp~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L~-~lp~~~~~~l~~L~~L~Ls~N  707 (876)
T 4ecn_A          630 KLK-YIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQ-KFPTELFATGSPISTIILSNN  707 (876)
T ss_dssp             CCC-SCCSCCCTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSSCCC-SCCHHHHHTTCCCSEEECCSC
T ss_pred             CCC-cCchhhhccccCCCCEEECcCCcCCCccccchhhhccccCCCcCEEEccCCcCC-ccCHHHHccCCCCCEEECCCC
Confidence            665 45555555433  6666666666665544221   1  2235566666666665 23333 335556666666666


Q ss_pred             cccccCchhhhhcC-------cCCcEEEccCCcccccCCcccC--CCCCCCEEEccCCcCCCCCChhhhhhhhhhhccch
Q 036375          725 RFSGNIPSLLGNGF-------VGLRILSLRSNAFSGEIPSKLS--NLSSLQVLDLAENNLTGSIPGSVGDLKAMAHVQNI  795 (1009)
Q Consensus       725 ~l~~~ip~~l~~~l-------~~L~~L~L~~N~l~~~~p~~l~--~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~~~~~  795 (1009)
                      +++ .+|..++...       ++|+.|+|++|+++ .+|..+.  .+++|+.|+|++|++++ +|..+.++++|      
T Consensus       708 ~L~-~ip~~~~~~~~~~l~nl~~L~~L~Ls~N~L~-~lp~~l~~~~l~~L~~L~Ls~N~L~~-lp~~l~~L~~L------  778 (876)
T 4ecn_A          708 LMT-SIPENSLKPKDGNYKNTYLLTTIDLRFNKLT-SLSDDFRATTLPYLSNMDVSYNCFSS-FPTQPLNSSQL------  778 (876)
T ss_dssp             CCS-CCCTTSSSCTTSCCTTGGGCCEEECCSSCCC-CCCGGGSTTTCTTCCEEECCSSCCSS-CCCGGGGCTTC------
T ss_pred             cCC-ccChHHhccccccccccCCccEEECCCCCCc-cchHHhhhccCCCcCEEEeCCCCCCc-cchhhhcCCCC------
Confidence            555 5555443211       14455555555444 4444443  44445555555444444 34444444433      


Q ss_pred             hhhhhccccccceeeceEEEeecCCCCCCCCceeEEEccCCccCCCCCccccCcCCCCeEEccCCcccccCCCCccCCCC
Q 036375          796 VKYLLFGRYRGIYYEENLVINTKGSSKDTPRLFHFIDLSGNNLHGDFPTQLTKLVGLVVLNLSRNHIGGQIPENISGLHQ  875 (1009)
Q Consensus       796 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~  875 (1009)
                                                       +.|+|++|+                  ++++|++.+.+|..|.++++
T Consensus       779 ---------------------------------~~L~Ls~N~------------------~ls~N~l~~~ip~~l~~L~~  807 (876)
T 4ecn_A          779 ---------------------------------KAFGIRHQR------------------DAEGNRILRQWPTGITTCPS  807 (876)
T ss_dssp             ---------------------------------CEEECCCCB------------------CTTCCBCCCCCCTTGGGCSS
T ss_pred             ---------------------------------CEEECCCCC------------------CcccccccccChHHHhcCCC
Confidence                                             344443322                  12336666777777777777


Q ss_pred             CCEEeCCCCcCCCCCcccccCCCCCCeEeCCCCcceec
Q 036375          876 LASLDLSSNNLSGGIPSSLSSLSFLGYINLSRNQLSGK  913 (1009)
Q Consensus       876 L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~ls~N~l~g~  913 (1009)
                      |+.|+|++|++ +.+|..+.  ++|++||+++|++...
T Consensus       808 L~~L~Ls~N~L-~~Ip~~l~--~~L~~LdLs~N~l~~i  842 (876)
T 4ecn_A          808 LIQLQIGSNDI-RKVDEKLT--PQLYILDIADNPNISI  842 (876)
T ss_dssp             CCEEECCSSCC-CBCCSCCC--SSSCEEECCSCTTCEE
T ss_pred             CCEEECCCCCC-CccCHhhc--CCCCEEECCCCCCCcc
Confidence            77777777777 56666654  4677777777766543

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=100.00  E-value=6.9e-44  Score=422.12  Aligned_cols=455  Identities=21%  Similarity=0.212  Sum_probs=340.1

Q ss_pred             CEEEcCCCcCCCCCCccccccccccCCCCCCCCCcEEECcCCcCcccCChhhcCCCCCCEEeCcCCcccccCCCCCCCCC
Q 036375          348 KEFDLSGNNLTGSLPEILQGTDLCVSSNSPLPSLISMRLGNNHLKGKLPEWLSQLENLVELTLSYNLLQGPIPASLGNLK  427 (1009)
Q Consensus       348 ~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~  427 (1009)
                      ++|++++|.++. +|..+            .++|++|++++|.+++..|..+..+++|++|++++|++++..|..|++++
T Consensus         3 ~~l~ls~n~l~~-ip~~~------------~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~   69 (520)
T 2z7x_B            3 FLVDRSKNGLIH-VPKDL------------SQKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQ   69 (520)
T ss_dssp             CEEECTTSCCSS-CCCSC------------CTTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCT
T ss_pred             ceEecCCCCccc-ccccc------------cccccEEECCCCcccccChhhccccccccEEecCCCccCCcChHHhhccc
Confidence            467777777763 44322            25677777777777766666677777777777777777766666777777


Q ss_pred             CCcEEeCCCCcCCCCCCcccCCCCCCCEEEccCcccccccchhhhccCCCCcEEeCCCCcccccCCCCCCCCccccEEec
Q 036375          428 NLTKLNLPGNQLNGTLPETLGSLPELSVLDVSSNSLTGIISEIHFSRLSKLKFLGLSSNSFILNVSSSWIPPFQVQSLNM  507 (1009)
Q Consensus       428 ~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l  507 (1009)
                      +|++|++++|+++ .+|..  .+++|++|++++|.+++...+..++.+++|++|++++|.+..                 
T Consensus        70 ~L~~L~Ls~N~l~-~lp~~--~l~~L~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~-----------------  129 (520)
T 2z7x_B           70 ELEYLDLSHNKLV-KISCH--PTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEK-----------------  129 (520)
T ss_dssp             TCCEEECCSSCCC-EEECC--CCCCCSEEECCSSCCSSCCCCGGGGGCTTCCEEEEEESSCCG-----------------
T ss_pred             CCCEEecCCCcee-ecCcc--ccCCccEEeccCCccccccchhhhccCCcceEEEecCcccch-----------------
Confidence            7777777777776 44544  567777777777776653211235566666666665554321                 


Q ss_pred             ccCcCCCCCCcccccCCCccEEEccCCcccCCCCchhhhccCcc--cEEEeccccc--cccCCCCCCCCCcCeEeccCCC
Q 036375          508 RSCQLGPSFPSWLKTQQGVSFLDFSNASISGPIPNWFWDISSKL--SLLNVSLNQL--QGQLPNPLNIAPFADVDFRSNL  583 (1009)
Q Consensus       508 ~~~~~~~~~~~~l~~~~~L~~L~ls~n~i~~~~p~~~~~~~~~L--~~L~ls~n~l--~~~~~~~~~~~~l~~l~l~~n~  583 (1009)
                                ..+..                         +++|  +.|++++|.+  .+..|..+....          
T Consensus       130 ----------~~~~~-------------------------l~~L~L~~L~l~~n~l~~~~~~~~~l~~l~----------  164 (520)
T 2z7x_B          130 ----------SSVLP-------------------------IAHLNISKVLLVLGETYGEKEDPEGLQDFN----------  164 (520)
T ss_dssp             ----------GGGGG-------------------------GTTSCEEEEEEEECTTTTSSCCTTTTTTCC----------
T ss_pred             ----------hhccc-------------------------cccceeeEEEeecccccccccccccccccc----------
Confidence                      11222                         2334  5555555555  333333221100          


Q ss_pred             CCCCCCCCCCCccEEEccCCcCCCcCCchhhcCCCCccEEEccCCc-------ccccCCcccccCCCCCeEEccCCcCCc
Q 036375          584 LEGPIPLPIVEIELLDLSNNHFSGPIPQNISGSMPNLIFLSVSGNR-------LTGKIPGSIGEMQLLQVIDLSRNSISG  656 (1009)
Q Consensus       584 l~~~~~~~~~~L~~L~Ls~n~l~~~ip~~~~~~l~~L~~L~Ls~n~-------l~~~~~~~~~~l~~L~~L~Ls~N~l~~  656 (1009)
                               .+...+++++|.+.+.++...+..+++|+.+++++|.       +.+.+| .+..+++|+.|++++|.+++
T Consensus       165 ---------~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~-~l~~l~~L~~L~l~~~~l~~  234 (520)
T 2z7x_B          165 ---------TESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILA-KLQTNPKLSNLTLNNIETTW  234 (520)
T ss_dssp             ---------EEEEEEECCSSSCCCCCCCCCCTTCSEEEECCEEECCSTTTTHHHHHHHH-GGGGCTTCCEEEEEEEEEEH
T ss_pred             ---------cceEEEEeccCcchhhhhhhhhhcccceeeccccccccccccceeecchh-hhccccchhhccccccccCH
Confidence                     0233567788888888888888889999999999997       666666 78899999999999998876


Q ss_pred             cCcCccc---CCCCCCEEECCCCcCcccCCccc-----cCCCCCCEEEccCccccCCCc-hhhcCC---CCCCEEECcCC
Q 036375          657 SISSSIG---NCTFLKVLDLSYSSLSGVIPASL-----GQLTRLQSLHLNNNKLTGNLP-SSFQNL---TSLETLDLGNN  724 (1009)
Q Consensus       657 ~~p~~l~---~l~~L~~L~Ls~N~l~~~~p~~~-----~~l~~L~~L~L~~N~l~~~~p-~~~~~l---~~L~~L~L~~N  724 (1009)
                      ..+..+.   .+++|++|++++|+++|.+|..+     +.+++|+.+++++|.+  .+| ..+..+   .+|+.|++++|
T Consensus       235 ~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~~l~~L~~l~l~~n~~--~~p~~~~~~~~~~~~L~~L~l~~n  312 (520)
T 2z7x_B          235 NSFIRILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVF--GFPQSYIYEIFSNMNIKNFTVSGT  312 (520)
T ss_dssp             HHHHHHHHHHHTSSCSEEEEEEEEEESCCCCCCCCCCSCCCCEEEEEEEEECCC--CSCTHHHHHHHHTCCCSEEEEESS
T ss_pred             HHHHHHHHHhhhCcccEEEeecccccCccccchhhcccccCceeEeccccccce--ecchhhhhcccccCceeEEEcCCC
Confidence            4332221   24699999999999999999988     8999999999999999  455 555554   78999999999


Q ss_pred             cccccCchhhhhcCcCCcEEEccCCcccccCCcccCCCCCCCEEEccCCcCCC--CCChhhhhhhhhhhccchhhhhhcc
Q 036375          725 RFSGNIPSLLGNGFVGLRILSLRSNAFSGEIPSKLSNLSSLQVLDLAENNLTG--SIPGSVGDLKAMAHVQNIVKYLLFG  802 (1009)
Q Consensus       725 ~l~~~ip~~l~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~--~~p~~~~~l~~L~~~~~~~~~~~~~  802 (1009)
                      .+.+ ++.  ...+++|+.|++++|++++.+|..+..+++|++|++++|++++  .+|..++.+++|             
T Consensus       313 ~l~~-~~~--~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L-------------  376 (520)
T 2z7x_B          313 RMVH-MLC--PSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSL-------------  376 (520)
T ss_dssp             CCCC-CCC--CSSCCCCCEEECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTC-------------
T ss_pred             cccc-ccc--hhhCCcccEEEeECCccChhhhhhhccCCCCCEEEccCCccCccccchHHHhhCCCC-------------
Confidence            9874 331  1258999999999999999899999999999999999999997  566777777776             


Q ss_pred             ccccceeeceEEEeecCCCCCCCCceeEEEccCCccCCCCCcc-ccCcCCCCeEEccCCcccccCCCCccCCCCCCEEeC
Q 036375          803 RYRGIYYEENLVINTKGSSKDTPRLFHFIDLSGNNLHGDFPTQ-LTKLVGLVVLNLSRNHIGGQIPENISGLHQLASLDL  881 (1009)
Q Consensus       803 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~Ls~N~l~~~~p~~-l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L  881 (1009)
                                                +.|||++|++++.+|.. +..+++|++|++++|++++.+|..+.  ++|++||+
T Consensus       377 --------------------------~~L~Ls~N~l~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~--~~L~~L~L  428 (520)
T 2z7x_B          377 --------------------------QQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCLP--PRIKVLDL  428 (520)
T ss_dssp             --------------------------CEEECCSSCCBCCGGGCSCCCCTTCCEEECCSSCCCGGGGGSCC--TTCCEEEC
T ss_pred             --------------------------CEEECCCCcCCcccccchhccCccCCEEECcCCCCCcchhhhhc--ccCCEEEC
Confidence                                      89999999999977764 88999999999999999999888776  79999999


Q ss_pred             CCCcCCCCCcccccCCCCCCeEeCCCCcceecCCCC--CCCCcccCCcCCCCCCCCCCC
Q 036375          882 SSNNLSGGIPSSLSSLSFLGYINLSRNQLSGKIPFE--GHMTTFDASSFAGNPGLCGDP  938 (1009)
Q Consensus       882 s~N~l~~~ip~~l~~l~~L~~L~ls~N~l~g~ip~~--~~~~~~~~~~~~~n~~lc~~~  938 (1009)
                      ++|+++ .+|..+..+++|++|++++|+++ .+|..  ..+..+....+.+||..|.++
T Consensus       429 s~N~l~-~ip~~~~~l~~L~~L~L~~N~l~-~l~~~~~~~l~~L~~L~l~~N~~~c~c~  485 (520)
T 2z7x_B          429 HSNKIK-SIPKQVVKLEALQELNVASNQLK-SVPDGIFDRLTSLQKIWLHTNPWDCSCP  485 (520)
T ss_dssp             CSSCCC-CCCGGGGGCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred             CCCccc-ccchhhhcCCCCCEEECCCCcCC-ccCHHHhccCCcccEEECcCCCCcccCC
Confidence            999999 78888889999999999999999 46653  344556666789999888653

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=100.00  E-value=2.1e-41  Score=412.16  Aligned_cols=527  Identities=20%  Similarity=0.194  Sum_probs=384.3

Q ss_pred             cCCccccCCCCCCEEEccCCcccccCchhhhcccCCCEEEcCCCcCCCCCCccccccccccCCCCCCCCCcEEECcCCcC
Q 036375          312 KLPSSVANMTSLTNFDLFDKKVEGGIPSSIARLCYLKEFDLSGNNLTGSLPEILQGTDLCVSSNSPLPSLISMRLGNNHL  391 (1009)
Q Consensus       312 ~~p~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l  391 (1009)
                      .+|..+.  +++++|++++|.+++..+.+|.++++|++|++++|.+++..|..|.          .+++|++|+|++|++
T Consensus        45 ~vP~~lp--~~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~----------~L~~L~~L~Ls~N~l  112 (635)
T 4g8a_A           45 KIPDNLP--FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQ----------SLSHLSTLILTGNPI  112 (635)
T ss_dssp             SCCSSSC--TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTT----------TCTTCCEEECTTCCC
T ss_pred             ccCCCCC--cCCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCCCcChhHhc----------CCCCCCEEEccCCcC
Confidence            4554442  4677888888887766667777888888888888877766666665          678888888888888


Q ss_pred             cccCChhhcCCCCCCEEeCcCCcccccCCCCCCCCCCCcEEeCCCCcCCCC-CCcccCCCCCCCEEEccCcccccccchh
Q 036375          392 KGKLPEWLSQLENLVELTLSYNLLQGPIPASLGNLKNLTKLNLPGNQLNGT-LPETLGSLPELSVLDVSSNSLTGIISEI  470 (1009)
Q Consensus       392 ~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~-~p~~l~~l~~L~~L~Ls~n~l~~~~~~~  470 (1009)
                      ++..+.+|.++++|++|++++|++++..+..|+++++|++|++++|.+++. .|..+..+++|++|++++|++++..+. 
T Consensus       113 ~~l~~~~f~~L~~L~~L~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~-  191 (635)
T 4g8a_A          113 QSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCT-  191 (635)
T ss_dssp             CEECGGGGTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGG-
T ss_pred             CCCCHHHhcCCCCCCEEECCCCcCCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCccccccccc-
Confidence            876667788888889999988888877777788888999999988888753 567778888899999998888865443 


Q ss_pred             hhccCCCC----cEEeCCCCcccccCCCCCCCCccccEEecccCcCCCCCCcccccCCCccEEEccCCcccCCCCchhhh
Q 036375          471 HFSRLSKL----KFLGLSSNSFILNVSSSWIPPFQVQSLNMRSCQLGPSFPSWLKTQQGVSFLDFSNASISGPIPNWFWD  546 (1009)
Q Consensus       471 ~~~~l~~L----~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~ls~n~i~~~~p~~~~~  546 (1009)
                      .+..+.++    ..++++.|.+.......+                         ....+..+++++|.....++.....
T Consensus       192 ~l~~L~~l~~~~~~~~ls~n~l~~i~~~~~-------------------------~~~~~~~l~l~~n~~~~~~~~~~~~  246 (635)
T 4g8a_A          192 DLRVLHQMPLLNLSLDLSLNPMNFIQPGAF-------------------------KEIRLHKLTLRNNFDSLNVMKTCIQ  246 (635)
T ss_dssp             GGHHHHTCTTCCCEEECTTCCCCEECTTTT-------------------------TTCEEEEEEEESCCSSHHHHHHHHH
T ss_pred             cccchhhhhhhhhhhhcccCcccccCcccc-------------------------cchhhhhhhhhcccccccccchhhc
Confidence            35544433    356666665543222211                         2223455566665544444333333


Q ss_pred             ccCcccEEEeccccccccCCCCCCCCCcCeEeccCCCCCCCCCCCCCCccEEEccCCcCCCcC--CchhhcCCCCccEEE
Q 036375          547 ISSKLSLLNVSLNQLQGQLPNPLNIAPFADVDFRSNLLEGPIPLPIVEIELLDLSNNHFSGPI--PQNISGSMPNLIFLS  624 (1009)
Q Consensus       547 ~~~~L~~L~ls~n~l~~~~~~~~~~~~l~~l~l~~n~l~~~~~~~~~~L~~L~Ls~n~l~~~i--p~~~~~~l~~L~~L~  624 (1009)
                      .+..++...+..+...+...-..       .       ..........+...++..+......  ....+....+++.++
T Consensus       247 ~l~~l~~~~l~~~~~~~~~~l~~-------~-------~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~  312 (635)
T 4g8a_A          247 GLAGLEVHRLVLGEFRNEGNLEK-------F-------DKSALEGLCNLTIEEFRLAYLDYYLDGIIDLFNCLTNVSSFS  312 (635)
T ss_dssp             TTTTCEEEEEEEECCTTSCCCSC-------C-------CTTTTGGGGGSEEEEEEEECCCSCEEECTTTTGGGTTCSEEE
T ss_pred             CCccccccccccccccccccccc-------c-------cccccccccchhhhhhhhhhhcccccchhhhhhhhccccccc
Confidence            44555555544333221110000       0       0000001123333333333222111  112344577899999


Q ss_pred             ccCCcccccCCcccccCCCCCeEEccCCcCCccCcCcccCCCCCCEEECCCCcCcccCCccccCCCCCCEEEccCcccc-
Q 036375          625 VSGNRLTGKIPGSIGEMQLLQVIDLSRNSISGSISSSIGNCTFLKVLDLSYSSLSGVIPASLGQLTRLQSLHLNNNKLT-  703 (1009)
Q Consensus       625 Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~-  703 (1009)
                      +.++.+....  .+.....|+.|++.+|.+.+..+.   .+..|+.+++..|.+....  ....+++|+.|++++|.+. 
T Consensus       313 ~~~~~~~~~~--~~~~~~~L~~L~l~~~~~~~~~~~---~l~~L~~l~l~~n~~~~~~--~~~~l~~L~~L~ls~n~l~~  385 (635)
T 4g8a_A          313 LVSVTIERVK--DFSYNFGWQHLELVNCKFGQFPTL---KLKSLKRLTFTSNKGGNAF--SEVDLPSLEFLDLSRNGLSF  385 (635)
T ss_dssp             EESCEEEECG--GGGSCCCCSEEEEESCEESSCCCC---BCTTCCEEEEESCCSCCBC--CCCBCTTCCEEECCSSCCBE
T ss_pred             cccccccccc--ccccchhhhhhhcccccccCcCcc---cchhhhhcccccccCCCCc--ccccccccccchhhcccccc
Confidence            9999887554  355678899999999998865443   4678999999999887543  3557899999999999986 


Q ss_pred             -CCCchhhcCCCCCCEEECcCCcccccCchhhhhcCcCCcEEEccCCcccccCC-cccCCCCCCCEEEccCCcCCCCCCh
Q 036375          704 -GNLPSSFQNLTSLETLDLGNNRFSGNIPSLLGNGFVGLRILSLRSNAFSGEIP-SKLSNLSSLQVLDLAENNLTGSIPG  781 (1009)
Q Consensus       704 -~~~p~~~~~l~~L~~L~L~~N~l~~~ip~~l~~~l~~L~~L~L~~N~l~~~~p-~~l~~l~~L~~L~Ls~N~l~~~~p~  781 (1009)
                       +..+..+..+.+|+.+++..|...+ ++..+. .+++|+.+++.+|......+ ..+..+++++.+++++|++.+..|.
T Consensus       386 ~~~~~~~~~~~~~L~~L~~~~~~~~~-~~~~~~-~l~~L~~l~l~~~~~~~~~~~~~~~~l~~l~~l~ls~n~l~~~~~~  463 (635)
T 4g8a_A          386 KGCCSQSDFGTISLKYLDLSFNGVIT-MSSNFL-GLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNG  463 (635)
T ss_dssp             EEECCHHHHSCSCCCEEECCSCSEEE-ECSCCT-TCTTCCEEECTTSEEESTTSSCTTTTCTTCCEEECTTSCCEECCTT
T ss_pred             ccccccchhhhhhhhhhhcccccccc-cccccc-ccccccchhhhhcccccccccccccccccccccccccccccccccc
Confidence             4466778889999999999999874 444444 48999999999998876554 4578899999999999999999888


Q ss_pred             hhhhhhhhhhccchhhhhhccccccceeeceEEEeecCCCCCCCCceeEEEccCCcc-CCCCCccccCcCCCCeEEccCC
Q 036375          782 SVGDLKAMAHVQNIVKYLLFGRYRGIYYEENLVINTKGSSKDTPRLFHFIDLSGNNL-HGDFPTQLTKLVGLVVLNLSRN  860 (1009)
Q Consensus       782 ~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~Ls~N~l-~~~~p~~l~~l~~L~~L~Ls~N  860 (1009)
                      .+..++.+                                       +.|+|++|++ .+.+|..|..+++|++|+|++|
T Consensus       464 ~~~~~~~L---------------------------------------~~L~Ls~N~~~~~~~~~~~~~l~~L~~L~Ls~N  504 (635)
T 4g8a_A          464 IFNGLSSL---------------------------------------EVLKMAGNSFQENFLPDIFTELRNLTFLDLSQC  504 (635)
T ss_dssp             TTTTCTTC---------------------------------------CEEECTTCEEGGGEECSCCTTCTTCCEEECTTS
T ss_pred             ccccchhh---------------------------------------hhhhhhhcccccccCchhhhhccccCEEECCCC
Confidence            88777766                                       8899999985 4567889999999999999999


Q ss_pred             cccccCCCCccCCCCCCEEeCCCCcCCCCCcccccCCCCCCeEeCCCCcceecCCCCC-CC-CcccCCcCCCCCCCCCCC
Q 036375          861 HIGGQIPENISGLHQLASLDLSSNNLSGGIPSSLSSLSFLGYINLSRNQLSGKIPFEG-HM-TTFDASSFAGNPGLCGDP  938 (1009)
Q Consensus       861 ~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~ls~N~l~g~ip~~~-~~-~~~~~~~~~~n~~lc~~~  938 (1009)
                      ++++.+|..|+++++|++|+|++|+|++.+|..|+.+++|++||+++|+|++.+|..- .+ .++....+.+||+-|.+.
T Consensus       505 ~L~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~~L~~L~L~~Np~~C~C~  584 (635)
T 4g8a_A          505 QLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCE  584 (635)
T ss_dssp             CCCEECTTTTTTCTTCCEEECTTSCCCBCCCGGGTTCTTCCEEECTTSCCCBCCSSCTTCCCTTCCEEECTTCCBCCSGG
T ss_pred             ccCCcChHHHcCCCCCCEEECCCCcCCCCChhHHhCCCCCCEEECCCCcCCCCCHHHHHhhhCcCCEEEeeCCCCcccCC
Confidence            9999999999999999999999999999999999999999999999999999988642 22 456666789999999653

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=100.00  E-value=7.6e-41  Score=399.21  Aligned_cols=458  Identities=21%  Similarity=0.240  Sum_probs=277.6

Q ss_pred             CCCEEEccCCcccccCchhhhcccCCCEEEcCCCcCCCCCCccccccccccCCCCCCCCCcEEECcCCcCcccCChhhcC
Q 036375          322 SLTNFDLFDKKVEGGIPSSIARLCYLKEFDLSGNNLTGSLPEILQGTDLCVSSNSPLPSLISMRLGNNHLKGKLPEWLSQ  401 (1009)
Q Consensus       322 ~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~  401 (1009)
                      ..+++++++|.+++ +|..+.  ++|++|++++|.+++..|..+.          .+++|++|++++|.+++..|..|..
T Consensus        32 ~~~~l~ls~~~L~~-ip~~~~--~~L~~L~Ls~N~i~~~~~~~~~----------~l~~L~~L~Ls~N~l~~~~~~~~~~   98 (562)
T 3a79_B           32 LESMVDYSNRNLTH-VPKDLP--PRTKALSLSQNSISELRMPDIS----------FLSELRVLRLSHNRIRSLDFHVFLF   98 (562)
T ss_dssp             -CCEEECTTSCCCS-CCTTSC--TTCCEEECCSSCCCCCCGGGTT----------TCTTCCEEECCSCCCCEECTTTTTT
T ss_pred             CCcEEEcCCCCCcc-CCCCCC--CCcCEEECCCCCccccChhhhc----------cCCCccEEECCCCCCCcCCHHHhCC
Confidence            34667777666663 554432  5666666666666655554444          4556666666666666555555666


Q ss_pred             CCCCCEEeCcCCcccccCCCCCCCCCCCcEEeCCCCcCCCC-CCcccCCCCCCCEEEccCcccccccchhhhccCCCC--
Q 036375          402 LENLVELTLSYNLLQGPIPASLGNLKNLTKLNLPGNQLNGT-LPETLGSLPELSVLDVSSNSLTGIISEIHFSRLSKL--  478 (1009)
Q Consensus       402 l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~-~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L--  478 (1009)
                      +++|++|++++|.++ .+|..  .+++|++|++++|.+++. +|..++++++|++|++++|.+++.    .+..+++|  
T Consensus        99 l~~L~~L~Ls~N~l~-~lp~~--~l~~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~~----~~~~l~~L~L  171 (562)
T 3a79_B           99 NQDLEYLDVSHNRLQ-NISCC--PMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQL----DLLPVAHLHL  171 (562)
T ss_dssp             CTTCCEEECTTSCCC-EECSC--CCTTCSEEECCSSCCSBCCCCGGGGGCTTCCEEEEECSBCCTT----TTGGGTTSCE
T ss_pred             CCCCCEEECCCCcCC-ccCcc--ccccCCEEECCCCCccccCchHhhcccCcccEEecCCCccccC----chhhhhhcee
Confidence            666666666666655 33333  556666666666665542 334555566666666666555431    23333333  


Q ss_pred             cEEeCCCCcccccCCCCCCCCccccEEecccCcCCCCCCcccccCC-CccEEEccCCcccCCCCchhhhccCcccEEEec
Q 036375          479 KFLGLSSNSFILNVSSSWIPPFQVQSLNMRSCQLGPSFPSWLKTQQ-GVSFLDFSNASISGPIPNWFWDISSKLSLLNVS  557 (1009)
Q Consensus       479 ~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~-~L~~L~ls~n~i~~~~p~~~~~~~~~L~~L~ls  557 (1009)
                      ++|++++|.+..                      .+..|..+..+. ....+++++|.+.+.++......+++|+.++++
T Consensus       172 ~~L~L~~n~l~~----------------------~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~  229 (562)
T 3a79_B          172 SCILLDLVSYHI----------------------KGGETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIK  229 (562)
T ss_dssp             EEEEEEESSCCC----------------------CSSSCCEEEECCEEEEEEEECSSSCCCCCCEEEESSEEEEEEEEEE
T ss_pred             eEEEeecccccc----------------------cccCcccccccCcceEEEEecCccchhhhhhhcccccceEEEeccc
Confidence            555554444300                      444555555543 122456677777766666665566677777777


Q ss_pred             ccc-----ccccCCCCCCCCCcCeEeccCCCCCCCCCCCCCCccEEEccCCcCCCc----CCchhhcCCCCccEEEccCC
Q 036375          558 LNQ-----LQGQLPNPLNIAPFADVDFRSNLLEGPIPLPIVEIELLDLSNNHFSGP----IPQNISGSMPNLIFLSVSGN  628 (1009)
Q Consensus       558 ~n~-----l~~~~~~~~~~~~l~~l~l~~n~l~~~~~~~~~~L~~L~Ls~n~l~~~----ip~~~~~~l~~L~~L~Ls~n  628 (1009)
                      +|+     +.+.++....                     .++++.+++.++.+.+.    ++...  ..++|++|++++|
T Consensus       230 ~n~~~~~~l~~~~~~l~~---------------------l~~L~~L~L~~~~l~~~~~~~~~~~~--~~~~L~~L~l~~n  286 (562)
T 3a79_B          230 LNDENCQRLMTFLSELTR---------------------GPTLLNVTLQHIETTWKCSVKLFQFF--WPRPVEYLNIYNL  286 (562)
T ss_dssp             CCSTTHHHHHHHHHHHHS---------------------CSSCEEEEEEEEEECHHHHHHHHHHH--TTSSEEEEEEEEE
T ss_pred             ccccccchHHHHHHHHhc---------------------cCcceEEEecCCcCcHHHHHHHHHhh--hcccccEEEEecc
Confidence            764     1111111111                     23445555555444322    11111  2347777777777


Q ss_pred             cccccCCccc-----ccCCCCCeEEccCCcCCccCc-CcccC---CCCCCEEECCCCcCcccCCccccCCCCCCEEEccC
Q 036375          629 RLTGKIPGSI-----GEMQLLQVIDLSRNSISGSIS-SSIGN---CTFLKVLDLSYSSLSGVIPASLGQLTRLQSLHLNN  699 (1009)
Q Consensus       629 ~l~~~~~~~~-----~~l~~L~~L~Ls~N~l~~~~p-~~l~~---l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~  699 (1009)
                      .+++.+|..+     ..++.|+.+++..|.+  .+| ..+..   ..+|++|++++|.+....  ....+++|++|++++
T Consensus       287 ~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~--~~p~~~~~~~~~~~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~l~~  362 (562)
T 3a79_B          287 TITERIDREEFTYSETALKSLMIEHVKNQVF--LFSKEALYSVFAEMNIKMLSISDTPFIHMV--CPPSPSSFTFLNFTQ  362 (562)
T ss_dssp             EECSCCCCCCCCCCSCSCCEEEEEEEEECCC--SSCHHHHHHHHHTCCCSEEEEESSCCCCCC--CCSSCCCCCEEECCS
T ss_pred             Eeeccccchhhhcccccchheehhhccccee--ecChhhhhhhhccCcceEEEccCCCccccc--CccCCCCceEEECCC
Confidence            7777777665     5556666666666665  233 22221   256888888888876332  125778888888888


Q ss_pred             ccccCCCchhhcCCCCCCEEECcCCcccc--cCchhhhhcCcCCcEEEccCCcccccCCc-ccCCCCCCCEEEccCCcCC
Q 036375          700 NKLTGNLPSSFQNLTSLETLDLGNNRFSG--NIPSLLGNGFVGLRILSLRSNAFSGEIPS-KLSNLSSLQVLDLAENNLT  776 (1009)
Q Consensus       700 N~l~~~~p~~~~~l~~L~~L~L~~N~l~~--~ip~~l~~~l~~L~~L~L~~N~l~~~~p~-~l~~l~~L~~L~Ls~N~l~  776 (1009)
                      |++++..|..+..+++|++|++++|++++  .+|..+. .+++|+.|++++|++++.+|. .+..+++|++|++++|+++
T Consensus       363 n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~-~l~~L~~L~l~~N~l~~~~~~~~~~~l~~L~~L~l~~n~l~  441 (562)
T 3a79_B          363 NVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTK-NMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLT  441 (562)
T ss_dssp             SCCCTTTTTTCCSCSSCCEEECCSSCCCBTTHHHHTTT-TCTTCCEEECTTSCCBSCCSSCCCCCCTTCCEEECCSSCCC
T ss_pred             CccccchhhhhcccCCCCEEECCCCCcCCcccchhhhc-CCCCCCEEECCCCcCCCccChhhhcCcccCCEEECCCCCCC
Confidence            88888888888888888888888888874  2233444 588899999999998875665 4777888888888888877


Q ss_pred             CCCChhhhhhhhhhhccchhhhhhccccccceeeceEEEeecCCCCCCCCceeEEEccCCccCCCCCccccCcCCCCeEE
Q 036375          777 GSIPGSVGDLKAMAHVQNIVKYLLFGRYRGIYYEENLVINTKGSSKDTPRLFHFIDLSGNNLHGDFPTQLTKLVGLVVLN  856 (1009)
Q Consensus       777 ~~~p~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~Ls~N~l~~~~p~~l~~l~~L~~L~  856 (1009)
                      +.+|..+                                                               .  ++|+.|+
T Consensus       442 ~~~~~~l---------------------------------------------------------------~--~~L~~L~  456 (562)
T 3a79_B          442 GSVFRCL---------------------------------------------------------------P--PKVKVLD  456 (562)
T ss_dssp             GGGGSSC---------------------------------------------------------------C--TTCSEEE
T ss_pred             cchhhhh---------------------------------------------------------------c--CcCCEEE
Confidence            5444221                                                               1  3566677


Q ss_pred             ccCCcccccCCCCccCCCCCCEEeCCCCcCCCCCccc-ccCCCCCCeEeCCCCcceecCCC
Q 036375          857 LSRNHIGGQIPENISGLHQLASLDLSSNNLSGGIPSS-LSSLSFLGYINLSRNQLSGKIPF  916 (1009)
Q Consensus       857 Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~-l~~l~~L~~L~ls~N~l~g~ip~  916 (1009)
                      |++|+++ .+|..+.++++|++|+|++|++++ +|.. +..+++|++|++++|+++|.+|.
T Consensus       457 L~~N~l~-~ip~~~~~l~~L~~L~L~~N~l~~-l~~~~~~~l~~L~~L~l~~N~~~c~c~~  515 (562)
T 3a79_B          457 LHNNRIM-SIPKDVTHLQALQELNVASNQLKS-VPDGVFDRLTSLQYIWLHDNPWDCTCPG  515 (562)
T ss_dssp             CCSSCCC-CCCTTTTSSCCCSEEECCSSCCCC-CCTTSTTTCTTCCCEECCSCCBCCCHHH
T ss_pred             CCCCcCc-ccChhhcCCCCCCEEECCCCCCCC-CCHHHHhcCCCCCEEEecCCCcCCCcch
Confidence            7777776 455555577777777777777774 4444 77777888888888887776653

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=100.00  E-value=1.5e-40  Score=396.75  Aligned_cols=461  Identities=20%  Similarity=0.200  Sum_probs=327.5

Q ss_pred             cccCCCEEEcCCCcCCCCCCccccccccccCCCCCCCCCcEEECcCCcCcccCChhhcCCCCCCEEeCcCCcccccCCCC
Q 036375          343 RLCYLKEFDLSGNNLTGSLPEILQGTDLCVSSNSPLPSLISMRLGNNHLKGKLPEWLSQLENLVELTLSYNLLQGPIPAS  422 (1009)
Q Consensus       343 ~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~  422 (1009)
                      .+...+++++++|.+++ +|..+            .++|++|++++|.+++..+..+..+++|++|++++|.+++..|..
T Consensus        29 ~~~~~~~l~ls~~~L~~-ip~~~------------~~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~   95 (562)
T 3a79_B           29 SNELESMVDYSNRNLTH-VPKDL------------PPRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHV   95 (562)
T ss_dssp             ----CCEEECTTSCCCS-CCTTS------------CTTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEECTTT
T ss_pred             ccCCCcEEEcCCCCCcc-CCCCC------------CCCcCEEECCCCCccccChhhhccCCCccEEECCCCCCCcCCHHH
Confidence            34455788888888775 44322            257888888888887766677788888888888888888777777


Q ss_pred             CCCCCCCcEEeCCCCcCCCCCCcccCCCCCCCEEEccCcccccccchhhhccCCCCcEEeCCCCcccccCCCCCCCCccc
Q 036375          423 LGNLKNLTKLNLPGNQLNGTLPETLGSLPELSVLDVSSNSLTGIISEIHFSRLSKLKFLGLSSNSFILNVSSSWIPPFQV  502 (1009)
Q Consensus       423 l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L  502 (1009)
                      |.++++|++|++++|.++ .+|..  .+++|++|++++|.+++......|.++++|++|++++|.+..            
T Consensus        96 ~~~l~~L~~L~Ls~N~l~-~lp~~--~l~~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~------------  160 (562)
T 3a79_B           96 FLFNQDLEYLDVSHNRLQ-NISCC--PMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQ------------  160 (562)
T ss_dssp             TTTCTTCCEEECTTSCCC-EECSC--CCTTCSEEECCSSCCSBCCCCGGGGGCTTCCEEEEECSBCCT------------
T ss_pred             hCCCCCCCEEECCCCcCC-ccCcc--ccccCCEEECCCCCccccCchHhhcccCcccEEecCCCcccc------------
Confidence            888888888888888877 45554  677888888888877753322346777777777777665421            


Q ss_pred             cEEecccCcCCCCCCcccccCCCccEEEccCCcc--cCCCCchhhhccCcccEEEeccccccccCCCCCCCCCcCeEecc
Q 036375          503 QSLNMRSCQLGPSFPSWLKTQQGVSFLDFSNASI--SGPIPNWFWDISSKLSLLNVSLNQLQGQLPNPLNIAPFADVDFR  580 (1009)
Q Consensus       503 ~~L~l~~~~~~~~~~~~l~~~~~L~~L~ls~n~i--~~~~p~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~~l~~l~l~  580 (1009)
                                  .....+..+ +|++|++++|.+  ++..|..+.....                               
T Consensus       161 ------------~~~~~l~~L-~L~~L~L~~n~l~~~~~~~~~l~~l~~-------------------------------  196 (562)
T 3a79_B          161 ------------LDLLPVAHL-HLSCILLDLVSYHIKGGETESLQIPNT-------------------------------  196 (562)
T ss_dssp             ------------TTTGGGTTS-CEEEEEEEESSCCCCSSSCCEEEECCE-------------------------------
T ss_pred             ------------Cchhhhhhc-eeeEEEeecccccccccCcccccccCc-------------------------------
Confidence                        001111112 235555555555  4444443321100                               


Q ss_pred             CCCCCCCCCCCCCCccEEEccCCcCCCcCCchhhcCCCCccEEEccCCc-----ccccCCcccccCCCCCeEEccCCcCC
Q 036375          581 SNLLEGPIPLPIVEIELLDLSNNHFSGPIPQNISGSMPNLIFLSVSGNR-----LTGKIPGSIGEMQLLQVIDLSRNSIS  655 (1009)
Q Consensus       581 ~n~l~~~~~~~~~~L~~L~Ls~n~l~~~ip~~~~~~l~~L~~L~Ls~n~-----l~~~~~~~~~~l~~L~~L~Ls~N~l~  655 (1009)
                                   ..-.+++++|.+.+.++...+..+++|+.+++++|+     +.+. ...+.++++|+.|++.++.+.
T Consensus       197 -------------~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~~~-~~~l~~l~~L~~L~L~~~~l~  262 (562)
T 3a79_B          197 -------------TVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTF-LSELTRGPTLLNVTLQHIETT  262 (562)
T ss_dssp             -------------EEEEEEECSSSCCCCCCEEEESSEEEEEEEEEECCSTTHHHHHHH-HHHHHSCSSCEEEEEEEEEEC
T ss_pred             -------------ceEEEEecCccchhhhhhhcccccceEEEecccccccccchHHHH-HHHHhccCcceEEEecCCcCc
Confidence                         011345666666666666666677778888888774     2222 235667788888888877765


Q ss_pred             ccC----cCcccCCCCCCEEECCCCcCcccCCccc-----cCCCCCCEEEccCccccCCCc-hhhcC---CCCCCEEECc
Q 036375          656 GSI----SSSIGNCTFLKVLDLSYSSLSGVIPASL-----GQLTRLQSLHLNNNKLTGNLP-SSFQN---LTSLETLDLG  722 (1009)
Q Consensus       656 ~~~----p~~l~~l~~L~~L~Ls~N~l~~~~p~~~-----~~l~~L~~L~L~~N~l~~~~p-~~~~~---l~~L~~L~L~  722 (1009)
                      +..    +..+ ..++|++|++++|+++|.+|..+     ..++.|+.++++.|.+  .+| ..+..   ..+|++|+++
T Consensus       263 ~~~~~~~~~~~-~~~~L~~L~l~~n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~--~~p~~~~~~~~~~~~L~~L~l~  339 (562)
T 3a79_B          263 WKCSVKLFQFF-WPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVF--LFSKEALYSVFAEMNIKMLSIS  339 (562)
T ss_dssp             HHHHHHHHHHH-TTSSEEEEEEEEEEECSCCCCCCCCCCSCSCCEEEEEEEEECCC--SSCHHHHHHHHHTCCCSEEEEE
T ss_pred             HHHHHHHHHhh-hcccccEEEEeccEeeccccchhhhcccccchheehhhccccee--ecChhhhhhhhccCcceEEEcc
Confidence            421    1112 23489999999999988888877     6677777777777776  344 33322   3679999999


Q ss_pred             CCcccccCchhhhhcCcCCcEEEccCCcccccCCcccCCCCCCCEEEccCCcCCCC--CChhhhhhhhhhhccchhhhhh
Q 036375          723 NNRFSGNIPSLLGNGFVGLRILSLRSNAFSGEIPSKLSNLSSLQVLDLAENNLTGS--IPGSVGDLKAMAHVQNIVKYLL  800 (1009)
Q Consensus       723 ~N~l~~~ip~~l~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~--~p~~~~~l~~L~~~~~~~~~~~  800 (1009)
                      +|.+.. ++.  ...+++|+.|++++|++++.+|..+..+++|++|++++|++++.  +|..++++++|           
T Consensus       340 ~n~~~~-~~~--~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L-----------  405 (562)
T 3a79_B          340 DTPFIH-MVC--PPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSL-----------  405 (562)
T ss_dssp             SSCCCC-CCC--CSSCCCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTC-----------
T ss_pred             CCCccc-ccC--ccCCCCceEEECCCCccccchhhhhcccCCCCEEECCCCCcCCcccchhhhcCCCCC-----------
Confidence            998863 221  12589999999999999998999999999999999999999973  34566676666           


Q ss_pred             ccccccceeeceEEEeecCCCCCCCCceeEEEccCCccCCCCCc-cccCcCCCCeEEccCCcccccCCCCccCCCCCCEE
Q 036375          801 FGRYRGIYYEENLVINTKGSSKDTPRLFHFIDLSGNNLHGDFPT-QLTKLVGLVVLNLSRNHIGGQIPENISGLHQLASL  879 (1009)
Q Consensus       801 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~Ls~N~l~~~~p~-~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L  879 (1009)
                                                  +.|+|++|++++.+|. .+..+++|++|++++|++++.+|..+.  ++|++|
T Consensus       406 ----------------------------~~L~l~~N~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~--~~L~~L  455 (562)
T 3a79_B          406 ----------------------------ETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVFRCLP--PKVKVL  455 (562)
T ss_dssp             ----------------------------CEEECTTSCCBSCCSSCCCCCCTTCCEEECCSSCCCGGGGSSCC--TTCSEE
T ss_pred             ----------------------------CEEECCCCcCCCccChhhhcCcccCCEEECCCCCCCcchhhhhc--CcCCEE
Confidence                                        8999999999996665 588999999999999999998888776  799999


Q ss_pred             eCCCCcCCCCCcccccCCCCCCeEeCCCCcceecCCCC--CCCCcccCCcCCCCCCCCCCC
Q 036375          880 DLSSNNLSGGIPSSLSSLSFLGYINLSRNQLSGKIPFE--GHMTTFDASSFAGNPGLCGDP  938 (1009)
Q Consensus       880 ~Ls~N~l~~~ip~~l~~l~~L~~L~ls~N~l~g~ip~~--~~~~~~~~~~~~~n~~lc~~~  938 (1009)
                      +|++|+++ .+|..+..+++|++|++++|+++ .+|..  ..+..+....+.+||+-|.++
T Consensus       456 ~L~~N~l~-~ip~~~~~l~~L~~L~L~~N~l~-~l~~~~~~~l~~L~~L~l~~N~~~c~c~  514 (562)
T 3a79_B          456 DLHNNRIM-SIPKDVTHLQALQELNVASNQLK-SVPDGVFDRLTSLQYIWLHDNPWDCTCP  514 (562)
T ss_dssp             ECCSSCCC-CCCTTTTSSCCCSEEECCSSCCC-CCCTTSTTTCTTCCCEECCSCCBCCCHH
T ss_pred             ECCCCcCc-ccChhhcCCCCCCEEECCCCCCC-CCCHHHHhcCCCCCEEEecCCCcCCCcc
Confidence            99999999 68887789999999999999999 46653  345556667789999998653

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=100.00  E-value=2.7e-38  Score=367.63  Aligned_cols=386  Identities=22%  Similarity=0.241  Sum_probs=267.5

Q ss_pred             cEEECcCCcCcccCChhhcCCCCCCEEeCcCCcccccCCCCCCCCCCCcEEeCCCCcCCCCC-CcccCCCCCCCEEEccC
Q 036375          382 ISMRLGNNHLKGKLPEWLSQLENLVELTLSYNLLQGPIPASLGNLKNLTKLNLPGNQLNGTL-PETLGSLPELSVLDVSS  460 (1009)
Q Consensus       382 ~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~-p~~l~~l~~L~~L~Ls~  460 (1009)
                      +.++.+++.++ .+|. +  .++|++|++++|.+++..|..|.++++|++|++++|.+.+.+ +..|.++++|++|++++
T Consensus        13 ~~~~c~~~~l~-~lp~-l--~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~   88 (455)
T 3v47_A           13 YNAICINRGLH-QVPE-L--PAHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDY   88 (455)
T ss_dssp             TEEECCSSCCS-SCCC-C--CTTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTT
T ss_pred             cccCcCCCCcc-cCCC-C--CCccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCC
Confidence            45666666665 3444 2  256777777777777666667777777777777777665444 34566666677777766


Q ss_pred             cccccccchhhhccCCCCcEEeCCCCcccccCCCCCCCCccccEEecccCcCCCCCCcccccCCCccEEEccCCcccCCC
Q 036375          461 NSLTGIISEIHFSRLSKLKFLGLSSNSFILNVSSSWIPPFQVQSLNMRSCQLGPSFPSWLKTQQGVSFLDFSNASISGPI  540 (1009)
Q Consensus       461 n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~ls~n~i~~~~  540 (1009)
                      |.+++..+. .+.++++|++|++++|.                                                +++.+
T Consensus        89 n~l~~~~~~-~~~~l~~L~~L~L~~n~------------------------------------------------l~~~~  119 (455)
T 3v47_A           89 NQFLQLETG-AFNGLANLEVLTLTQCN------------------------------------------------LDGAV  119 (455)
T ss_dssp             CTTCEECTT-TTTTCTTCCEEECTTSC------------------------------------------------CBTHH
T ss_pred             CccCccChh-hccCcccCCEEeCCCCC------------------------------------------------CCccc
Confidence            666544333 24444444444444443                                                33211


Q ss_pred             Cch-hhhccCcccEEEeccccccccCCCCCCCCCcCeEeccCCCCCCCCCCCCCCccEEEccCCcCCCcCCchhhcCCCC
Q 036375          541 PNW-FWDISSKLSLLNVSLNQLQGQLPNPLNIAPFADVDFRSNLLEGPIPLPIVEIELLDLSNNHFSGPIPQNISGSMPN  619 (1009)
Q Consensus       541 p~~-~~~~~~~L~~L~ls~n~l~~~~~~~~~~~~l~~l~l~~n~l~~~~~~~~~~L~~L~Ls~n~l~~~ip~~~~~~l~~  619 (1009)
                      +.. ..                                            ..+++|++|++++|.+.+..|..++..+++
T Consensus       120 ~~~~~~--------------------------------------------~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~  155 (455)
T 3v47_A          120 LSGNFF--------------------------------------------KPLTSLEMLVLRDNNIKKIQPASFFLNMRR  155 (455)
T ss_dssp             HHSSTT--------------------------------------------TTCTTCCEEECCSSBCCSCCCCGGGGGCTT
T ss_pred             cCcccc--------------------------------------------cCcccCCEEECCCCccCccCcccccCCCCc
Confidence            111 00                                            012345555555555554555554556666


Q ss_pred             ccEEEccCCcccccCCcccccC--CCCCeEEccCCcCCccCcCc--------ccCCCCCCEEECCCCcCcccCCccccCC
Q 036375          620 LIFLSVSGNRLTGKIPGSIGEM--QLLQVIDLSRNSISGSISSS--------IGNCTFLKVLDLSYSSLSGVIPASLGQL  689 (1009)
Q Consensus       620 L~~L~Ls~n~l~~~~~~~~~~l--~~L~~L~Ls~N~l~~~~p~~--------l~~l~~L~~L~Ls~N~l~~~~p~~~~~l  689 (1009)
                      |++|++++|++++..+..+..+  .+|+.|++++|.+.+..+..        +..+++|++|++++|++++..|..+...
T Consensus       156 L~~L~L~~n~l~~~~~~~l~~l~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~  235 (455)
T 3v47_A          156 FHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDA  235 (455)
T ss_dssp             CCEEECTTCCBSCCCTTTSGGGTTCEEEEEECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHH
T ss_pred             ccEEeCCCCcccccChhhhhccccccccccccccCcccccchhhccccccccccccceeeeEecCCCcccccchhhhhcc
Confidence            7777777777666666666555  56667777777766544332        2245667777777777776666655443


Q ss_pred             ---CCCCEEEccCccccCCCchhhcCCCCCCEEECcCCcccccCchhhh-hcCcCCcEEEccCCcccccCCcccCCCCCC
Q 036375          690 ---TRLQSLHLNNNKLTGNLPSSFQNLTSLETLDLGNNRFSGNIPSLLG-NGFVGLRILSLRSNAFSGEIPSKLSNLSSL  765 (1009)
Q Consensus       690 ---~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~ip~~l~-~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L  765 (1009)
                         ++|+.|++++|.+.+...              ..+.+.+..+..+. ...++|+.|++++|.+++..|..+..+++|
T Consensus       236 ~~~~~L~~L~l~~~~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L  301 (455)
T 3v47_A          236 IAGTKIQSLILSNSYNMGSSF--------------GHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDL  301 (455)
T ss_dssp             TTTCCEEEEECTTCTTTSCCT--------------TCCSSCCCCTTTTGGGTTSCCCEEECCSSCCCEECTTTTTTCTTC
T ss_pred             ccccceeeEeecccccccccc--------------chhhhccCcccccccccccCceEEEecCccccccchhhcccCCCC
Confidence               667777777766553211              11111111111111 124789999999999999999999999999


Q ss_pred             CEEEccCCcCCCCCChhhhhhhhhhhccchhhhhhccccccceeeceEEEeecCCCCCCCCceeEEEccCCccCCCCCcc
Q 036375          766 QVLDLAENNLTGSIPGSVGDLKAMAHVQNIVKYLLFGRYRGIYYEENLVINTKGSSKDTPRLFHFIDLSGNNLHGDFPTQ  845 (1009)
Q Consensus       766 ~~L~Ls~N~l~~~~p~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~Ls~N~l~~~~p~~  845 (1009)
                      ++|++++|++++..|..+.++++|                                       +.|+|++|.+++..|..
T Consensus       302 ~~L~Ls~n~l~~~~~~~~~~l~~L---------------------------------------~~L~Ls~N~l~~~~~~~  342 (455)
T 3v47_A          302 EQLTLAQNEINKIDDNAFWGLTHL---------------------------------------LKLNLSQNFLGSIDSRM  342 (455)
T ss_dssp             CEEECTTSCCCEECTTTTTTCTTC---------------------------------------CEEECCSSCCCEECGGG
T ss_pred             CEEECCCCcccccChhHhcCcccC---------------------------------------CEEECCCCccCCcChhH
Confidence            999999999999889888888877                                       89999999999999999


Q ss_pred             ccCcCCCCeEEccCCcccccCCCCccCCCCCCEEeCCCCcCCCCCcccccCCCCCCeEeCCCCcceecCCCC
Q 036375          846 LTKLVGLVVLNLSRNHIGGQIPENISGLHQLASLDLSSNNLSGGIPSSLSSLSFLGYINLSRNQLSGKIPFE  917 (1009)
Q Consensus       846 l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~ls~N~l~g~ip~~  917 (1009)
                      ++++++|++|+|++|++++.+|..|.++++|++|+|++|++++..+..++.+++|++|++++|+++|.+|..
T Consensus       343 ~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~  414 (455)
T 3v47_A          343 FENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRI  414 (455)
T ss_dssp             GTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTTTT
T ss_pred             hcCcccCCEEECCCCcccccChhhccccccccEEECCCCccccCCHhHhccCCcccEEEccCCCcccCCCcc
Confidence            999999999999999999999999999999999999999999988888899999999999999999999964

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=100.00  E-value=1.9e-38  Score=365.08  Aligned_cols=392  Identities=25%  Similarity=0.326  Sum_probs=194.9

Q ss_pred             CCCCCcEEECcCCcCcccCChhhcCCCCCCEEeCcCCcccccCCCCCCCCCCC-------------cEEeCCCCcCCCCC
Q 036375          377 PLPSLISMRLGNNHLKGKLPEWLSQLENLVELTLSYNLLQGPIPASLGNLKNL-------------TKLNLPGNQLNGTL  443 (1009)
Q Consensus       377 ~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L-------------~~L~L~~n~l~~~~  443 (1009)
                      ..++|++|++++|.+ +.+|..++++++|++|++++|.+.+.+|..++++++|             ++|++++|.+++ +
T Consensus         9 ~~~~L~~L~l~~n~l-~~iP~~i~~L~~L~~L~l~~n~~~~~~p~~~~~l~~L~~l~l~~c~~~~l~~L~l~~~~l~~-l   86 (454)
T 1jl5_A            9 SNTFLQEPLRHSSNL-TEMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLDRQAHELELNNLGLSS-L   86 (454)
T ss_dssp             --------------------------CCHHHHHHHHHHHHHTSCTTSCCCHHHHHHHHHHHHHHTCSEEECTTSCCSC-C
T ss_pred             ccccchhhhcccCch-hhCChhHhcccchhhhhccCCcccccCCcccccchhcchhhhhhhhccCCCEEEecCCcccc-C
Confidence            357888889998888 6888888888999999999888888888888888765             666666666553 2


Q ss_pred             CcccCCCCCCCEEEccCcccccccchhhhccCCCCcEEeCCCCcccccCCCCCCCCccccEEecccCcCCCCCCcccccC
Q 036375          444 PETLGSLPELSVLDVSSNSLTGIISEIHFSRLSKLKFLGLSSNSFILNVSSSWIPPFQVQSLNMRSCQLGPSFPSWLKTQ  523 (1009)
Q Consensus       444 p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~  523 (1009)
                      |..   .++|++|++++|.+++ ++.    ..++|++|++++|.+                        .+ ++..   .
T Consensus        87 p~~---~~~L~~L~l~~n~l~~-lp~----~~~~L~~L~l~~n~l------------------------~~-l~~~---~  130 (454)
T 1jl5_A           87 PEL---PPHLESLVASCNSLTE-LPE----LPQSLKSLLVDNNNL------------------------KA-LSDL---P  130 (454)
T ss_dssp             CSC---CTTCSEEECCSSCCSS-CCC----CCTTCCEEECCSSCC------------------------SC-CCSC---C
T ss_pred             CCC---cCCCCEEEccCCcCCc-ccc----ccCCCcEEECCCCcc------------------------Cc-ccCC---C
Confidence            321   2455666666665554 221    124444444444433                        21 1110   1


Q ss_pred             CCccEEEccCCcccCCCCchhhhccCcccEEEeccccccccCCCCCCCCCcCeEeccCCCCCCCCCCCCCCccEEEccCC
Q 036375          524 QGVSFLDFSNASISGPIPNWFWDISSKLSLLNVSLNQLQGQLPNPLNIAPFADVDFRSNLLEGPIPLPIVEIELLDLSNN  603 (1009)
Q Consensus       524 ~~L~~L~ls~n~i~~~~p~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~~l~~l~l~~n~l~~~~~~~~~~L~~L~Ls~n  603 (1009)
                      ++|++|++++|++++ +|.  ...+++|++|++++|++++                        +|....+|++|++++|
T Consensus       131 ~~L~~L~L~~n~l~~-lp~--~~~l~~L~~L~l~~N~l~~------------------------lp~~~~~L~~L~L~~n  183 (454)
T 1jl5_A          131 PLLEYLGVSNNQLEK-LPE--LQNSSFLKIIDVDNNSLKK------------------------LPDLPPSLEFIAAGNN  183 (454)
T ss_dssp             TTCCEEECCSSCCSS-CCC--CTTCTTCCEEECCSSCCSC------------------------CCCCCTTCCEEECCSS
T ss_pred             CCCCEEECcCCCCCC-Ccc--cCCCCCCCEEECCCCcCcc------------------------cCCCcccccEEECcCC
Confidence            456666666666554 442  2234555555555555443                        2222346777777777


Q ss_pred             cCCCcCCchhhcCCCCccEEEccCCcccccCCcccccCCCCCeEEccCCcCCccCcCcccCCCCCCEEECCCCcCcccCC
Q 036375          604 HFSGPIPQNISGSMPNLIFLSVSGNRLTGKIPGSIGEMQLLQVIDLSRNSISGSISSSIGNCTFLKVLDLSYSSLSGVIP  683 (1009)
Q Consensus       604 ~l~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p  683 (1009)
                      .+++ +|.  +..+++|++|++++|++++ +|..   .++|++|++++|+++ .+| .++.+++|++|++++|++++ +|
T Consensus       184 ~l~~-l~~--~~~l~~L~~L~l~~N~l~~-l~~~---~~~L~~L~l~~n~l~-~lp-~~~~l~~L~~L~l~~N~l~~-l~  253 (454)
T 1jl5_A          184 QLEE-LPE--LQNLPFLTAIYADNNSLKK-LPDL---PLSLESIVAGNNILE-ELP-ELQNLPFLTTIYADNNLLKT-LP  253 (454)
T ss_dssp             CCSS-CCC--CTTCTTCCEEECCSSCCSS-CCCC---CTTCCEEECCSSCCS-SCC-CCTTCTTCCEEECCSSCCSS-CC
T ss_pred             cCCc-Ccc--ccCCCCCCEEECCCCcCCc-CCCC---cCcccEEECcCCcCC-ccc-ccCCCCCCCEEECCCCcCCc-cc
Confidence            7764 552  4567777777777777765 2222   246777777777776 445 36677777777777777764 33


Q ss_pred             ccccCCCCCCEEEccCccccCCCchhhcCCCCCCEEECcCCcccccCchhhhhcCcCCcEEEccCCcccccCCcccCCCC
Q 036375          684 ASLGQLTRLQSLHLNNNKLTGNLPSSFQNLTSLETLDLGNNRFSGNIPSLLGNGFVGLRILSLRSNAFSGEIPSKLSNLS  763 (1009)
Q Consensus       684 ~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~ip~~l~~~l~~L~~L~L~~N~l~~~~p~~l~~l~  763 (1009)
                      ..   +++|++|++++|++++ +|..   .++|++|++++|++++ +|..    .++|+.|++++|++++ ++.   ..+
T Consensus       254 ~~---~~~L~~L~l~~N~l~~-l~~~---~~~L~~L~ls~N~l~~-l~~~----~~~L~~L~l~~N~l~~-i~~---~~~  317 (454)
T 1jl5_A          254 DL---PPSLEALNVRDNYLTD-LPEL---PQSLTFLDVSENIFSG-LSEL----PPNLYYLNASSNEIRS-LCD---LPP  317 (454)
T ss_dssp             SC---CTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCSE-ESCC----CTTCCEEECCSSCCSE-ECC---CCT
T ss_pred             cc---ccccCEEECCCCcccc-cCcc---cCcCCEEECcCCccCc-ccCc----CCcCCEEECcCCcCCc-ccC---CcC
Confidence            32   3567777777777764 4432   3567777777777664 3321    3566777777776664 221   114


Q ss_pred             CCCEEEccCCcCCCCCChhhhhhhhhhhccchhhhhhccccccceeeceEEEeecCCCCCCCCceeEEEccCCccCCCCC
Q 036375          764 SLQVLDLAENNLTGSIPGSVGDLKAMAHVQNIVKYLLFGRYRGIYYEENLVINTKGSSKDTPRLFHFIDLSGNNLHGDFP  843 (1009)
Q Consensus       764 ~L~~L~Ls~N~l~~~~p~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~Ls~N~l~~~~p  843 (1009)
                      +|++|++++|++++ +|..   +++|                                       +.|++++|++++ +|
T Consensus       318 ~L~~L~Ls~N~l~~-lp~~---~~~L---------------------------------------~~L~L~~N~l~~-lp  353 (454)
T 1jl5_A          318 SLEELNVSNNKLIE-LPAL---PPRL---------------------------------------ERLIASFNHLAE-VP  353 (454)
T ss_dssp             TCCEEECCSSCCSC-CCCC---CTTC---------------------------------------CEEECCSSCCSC-CC
T ss_pred             cCCEEECCCCcccc-cccc---CCcC---------------------------------------CEEECCCCcccc-cc
Confidence            66777777777665 4432   1222                                       666777777663 45


Q ss_pred             ccccCcCCCCeEEccCCcccc--cCCCCccCCCCCCEEeCCCCcCCCCCcccccCCCCCCeEeCCCCccee--cCCCC
Q 036375          844 TQLTKLVGLVVLNLSRNHIGG--QIPENISGLHQLASLDLSSNNLSGGIPSSLSSLSFLGYINLSRNQLSG--KIPFE  917 (1009)
Q Consensus       844 ~~l~~l~~L~~L~Ls~N~l~~--~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~ls~N~l~g--~ip~~  917 (1009)
                      .   .+++|++|++++|++++  .+|.+++.+        +.|++.|.+|..   +++|++||+++|+++|  .||..
T Consensus       354 ~---~l~~L~~L~L~~N~l~~l~~ip~~l~~L--------~~n~~~~~i~~~---~~~L~~L~ls~N~l~~~~~iP~s  417 (454)
T 1jl5_A          354 E---LPQNLKQLHVEYNPLREFPDIPESVEDL--------RMNSHLAEVPEL---PQNLKQLHVETNPLREFPDIPES  417 (454)
T ss_dssp             C---CCTTCCEEECCSSCCSSCCCCCTTCCEE--------ECCC----------------------------------
T ss_pred             c---hhhhccEEECCCCCCCcCCCChHHHHhh--------hhcccccccccc---cCcCCEEECCCCcCCccccchhh
Confidence            4   35667777777777766  555554432        335555666553   3788899999999988  77753

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=100.00  E-value=1.3e-37  Score=357.94  Aligned_cols=216  Identities=20%  Similarity=0.282  Sum_probs=98.0

Q ss_pred             CccEEEccCCcccccCCcccccCCCCCeEEccCCcCCccCcCcccCCCCCCEEECCCCcCcccCCccccCCCCCCEEEcc
Q 036375          619 NLIFLSVSGNRLTGKIPGSIGEMQLLQVIDLSRNSISGSISSSIGNCTFLKVLDLSYSSLSGVIPASLGQLTRLQSLHLN  698 (1009)
Q Consensus       619 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~  698 (1009)
                      +|++|++++|+++ .+| .++.+++|++|++++|++++ +|..   +++|++|++++|++++ +|..   .++|++|+++
T Consensus       216 ~L~~L~l~~n~l~-~lp-~~~~l~~L~~L~l~~N~l~~-l~~~---~~~L~~L~l~~N~l~~-l~~~---~~~L~~L~ls  285 (454)
T 1jl5_A          216 SLESIVAGNNILE-ELP-ELQNLPFLTTIYADNNLLKT-LPDL---PPSLEALNVRDNYLTD-LPEL---PQSLTFLDVS  285 (454)
T ss_dssp             TCCEEECCSSCCS-SCC-CCTTCTTCCEEECCSSCCSS-CCSC---CTTCCEEECCSSCCSC-CCCC---CTTCCEEECC
T ss_pred             cccEEECcCCcCC-ccc-ccCCCCCCCEEECCCCcCCc-cccc---ccccCEEECCCCcccc-cCcc---cCcCCEEECc
Confidence            4555555555554 233 25555566666666666553 2321   2566666666666664 3332   2566666666


Q ss_pred             CccccCCCchhhcCCCCCCEEECcCCcccccCchhhhhcCcCCcEEEccCCcccccCCcccCCCCCCCEEEccCCcCCCC
Q 036375          699 NNKLTGNLPSSFQNLTSLETLDLGNNRFSGNIPSLLGNGFVGLRILSLRSNAFSGEIPSKLSNLSSLQVLDLAENNLTGS  778 (1009)
Q Consensus       699 ~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~ip~~l~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~  778 (1009)
                      +|++++. |.   -.++|++|++++|++++ ++.    ..++|+.|++++|++++ +|..   +++|++|++++|++++ 
T Consensus       286 ~N~l~~l-~~---~~~~L~~L~l~~N~l~~-i~~----~~~~L~~L~Ls~N~l~~-lp~~---~~~L~~L~L~~N~l~~-  351 (454)
T 1jl5_A          286 ENIFSGL-SE---LPPNLYYLNASSNEIRS-LCD----LPPSLEELNVSNNKLIE-LPAL---PPRLERLIASFNHLAE-  351 (454)
T ss_dssp             SSCCSEE-SC---CCTTCCEEECCSSCCSE-ECC----CCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCSC-
T ss_pred             CCccCcc-cC---cCCcCCEEECcCCcCCc-ccC----CcCcCCEEECCCCcccc-cccc---CCcCCEEECCCCcccc-
Confidence            6666641 11   11466777777777663 332    13467777777777774 5543   4677788888887773 


Q ss_pred             CChhhhhhhhhhhccchhhhhhccccccceeeceEEEeecCCCCCCCCceeEEEccCCccCC--CCCccccCcCCCCeEE
Q 036375          779 IPGSVGDLKAMAHVQNIVKYLLFGRYRGIYYEENLVINTKGSSKDTPRLFHFIDLSGNNLHG--DFPTQLTKLVGLVVLN  856 (1009)
Q Consensus       779 ~p~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~Ls~N~l~~--~~p~~l~~l~~L~~L~  856 (1009)
                      +|.   .+++|                                       +.|++++|++++  .+|..++.        
T Consensus       352 lp~---~l~~L---------------------------------------~~L~L~~N~l~~l~~ip~~l~~--------  381 (454)
T 1jl5_A          352 VPE---LPQNL---------------------------------------KQLHVEYNPLREFPDIPESVED--------  381 (454)
T ss_dssp             CCC---CCTTC---------------------------------------CEEECCSSCCSSCCCCCTTCCE--------
T ss_pred             ccc---hhhhc---------------------------------------cEEECCCCCCCcCCCChHHHHh--------
Confidence            454   22333                                       777888888887  67766553        


Q ss_pred             ccCCcccccCCCCccCCCCCCEEeCCCCcCCC--CCcccccCCCCCCeEeCCCCcceecCCCC
Q 036375          857 LSRNHIGGQIPENISGLHQLASLDLSSNNLSG--GIPSSLSSLSFLGYINLSRNQLSGKIPFE  917 (1009)
Q Consensus       857 Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~--~ip~~l~~l~~L~~L~ls~N~l~g~ip~~  917 (1009)
                      |+.|++.|.+|..   +++|++||+++|++++  .+|.+      ++.|++.+|.+.+++|..
T Consensus       382 L~~n~~~~~i~~~---~~~L~~L~ls~N~l~~~~~iP~s------l~~L~~~~~~~~~~~~~~  435 (454)
T 1jl5_A          382 LRMNSHLAEVPEL---PQNLKQLHVETNPLREFPDIPES------VEDLRMNSERVVDPYEFA  435 (454)
T ss_dssp             EECCC----------------------------------------------------------
T ss_pred             hhhcccccccccc---cCcCCEEECCCCcCCccccchhh------HhheeCcCcccCCccccC
Confidence            3457777777764   5788999999999987  67754      456678888888887753

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=100.00  E-value=2.4e-36  Score=351.28  Aligned_cols=382  Identities=23%  Similarity=0.248  Sum_probs=248.5

Q ss_pred             cEEEcccccccccCCccccCCCCCCEEEccCCcccccCchhhhcccCCCEEEcCCCcCCCCC-CccccccccccCCCCCC
Q 036375          300 QILNFASNKLHGKLPSSVANMTSLTNFDLFDKKVEGGIPSSIARLCYLKEFDLSGNNLTGSL-PEILQGTDLCVSSNSPL  378 (1009)
Q Consensus       300 ~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~-~~~~~~~~~~~~~~~~l  378 (1009)
                      +.++.+++.+. .+|. +  .++|++|++++|.+++..|..++++++|++|++++|.+.+.+ +..+.          .+
T Consensus        13 ~~~~c~~~~l~-~lp~-l--~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~----------~l   78 (455)
T 3v47_A           13 YNAICINRGLH-QVPE-L--PAHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFR----------GL   78 (455)
T ss_dssp             TEEECCSSCCS-SCCC-C--CTTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTT----------TC
T ss_pred             cccCcCCCCcc-cCCC-C--CCccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECccccc----------cc
Confidence            45666666655 4454 2  267888888888888777777888888888888877776443 23333          56


Q ss_pred             CCCcEEECcCCcCcccCChhhcCCCCCCEEeCcCCcccccCCC--CCCCCCCCcEEeCCCCcCCCCCCcc-cCCCCCCCE
Q 036375          379 PSLISMRLGNNHLKGKLPEWLSQLENLVELTLSYNLLQGPIPA--SLGNLKNLTKLNLPGNQLNGTLPET-LGSLPELSV  455 (1009)
Q Consensus       379 ~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~--~l~~l~~L~~L~L~~n~l~~~~p~~-l~~l~~L~~  455 (1009)
                      ++|++|++++|.+++..|..+..+++|++|++++|.+++..+.  .+..+++|++|++++|.+++..|.. +.++++|++
T Consensus        79 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~  158 (455)
T 3v47_A           79 SSLIILKLDYNQFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHV  158 (455)
T ss_dssp             TTCCEEECTTCTTCEECTTTTTTCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCE
T ss_pred             ccCCEEeCCCCccCccChhhccCcccCCEEeCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccE
Confidence            6777777777777666666677777777777777766653333  3666677777777777766655554 566666666


Q ss_pred             EEccCcccccccchhhhccC--CCCcEEeCCCCcccccCCCCCCCCccccEEecccCcCCCCCCcc--------cccCCC
Q 036375          456 LDVSSNSLTGIISEIHFSRL--SKLKFLGLSSNSFILNVSSSWIPPFQVQSLNMRSCQLGPSFPSW--------LKTQQG  525 (1009)
Q Consensus       456 L~Ls~n~l~~~~~~~~~~~l--~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~--------l~~~~~  525 (1009)
                      |++++|.+++..+. .+..+  .+|+.|++++|.+                        ....+.+        +..+++
T Consensus       159 L~L~~n~l~~~~~~-~l~~l~~~~L~~L~l~~n~l------------------------~~~~~~~~~~~~~~~~~~~~~  213 (455)
T 3v47_A          159 LDLTFNKVKSICEE-DLLNFQGKHFTLLRLSSITL------------------------QDMNEYWLGWEKCGNPFKNTS  213 (455)
T ss_dssp             EECTTCCBSCCCTT-TSGGGTTCEEEEEECTTCBC------------------------TTCSTTCTTHHHHCCTTTTCE
T ss_pred             EeCCCCcccccChh-hhhccccccccccccccCcc------------------------cccchhhccccccccccccce
Confidence            66666666654433 23332  3444555544443                        3222222        234566


Q ss_pred             ccEEEccCCcccCCCCchhhhcc--CcccEEEeccccccccCCCCCCCCCcCeEeccCCCCCCCCCCCCCCccEEEccCC
Q 036375          526 VSFLDFSNASISGPIPNWFWDIS--SKLSLLNVSLNQLQGQLPNPLNIAPFADVDFRSNLLEGPIPLPIVEIELLDLSNN  603 (1009)
Q Consensus       526 L~~L~ls~n~i~~~~p~~~~~~~--~~L~~L~ls~n~l~~~~~~~~~~~~l~~l~l~~n~l~~~~~~~~~~L~~L~Ls~n  603 (1009)
                      |++|++++|++++.+|..+....  ++++.+++++|...+....                                    
T Consensus       214 L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~------------------------------------  257 (455)
T 3v47_A          214 ITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFG------------------------------------  257 (455)
T ss_dssp             EEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECTTCTTTSCCTT------------------------------------
T ss_pred             eeeEecCCCcccccchhhhhccccccceeeEeeccccccccccc------------------------------------
Confidence            77777777777766666554332  3444444444433321100                                    


Q ss_pred             cCCCcCCchhhcCCCCccEEEccCCcccccCCccccc--CCCCCeEEccCCcCCccCcCcccCCCCCCEEECCCCcCccc
Q 036375          604 HFSGPIPQNISGSMPNLIFLSVSGNRLTGKIPGSIGE--MQLLQVIDLSRNSISGSISSSIGNCTFLKVLDLSYSSLSGV  681 (1009)
Q Consensus       604 ~l~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~--l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~  681 (1009)
                                             .+.+.+..+..+.+  .++|++|++++|++.+..|..++.+++|++|++++|++++.
T Consensus       258 -----------------------~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~  314 (455)
T 3v47_A          258 -----------------------HTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKI  314 (455)
T ss_dssp             -----------------------CCSSCCCCTTTTGGGTTSCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEE
T ss_pred             -----------------------hhhhccCcccccccccccCceEEEecCccccccchhhcccCCCCCEEECCCCccccc
Confidence                                   01111111112222  35677777777777777777777777888888888888777


Q ss_pred             CCccccCCCCCCEEEccCccccCCCchhhcCCCCCCEEECcCCcccccCchhhhhcCcCCcEEEccCCcccccCCcccCC
Q 036375          682 IPASLGQLTRLQSLHLNNNKLTGNLPSSFQNLTSLETLDLGNNRFSGNIPSLLGNGFVGLRILSLRSNAFSGEIPSKLSN  761 (1009)
Q Consensus       682 ~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~ip~~l~~~l~~L~~L~L~~N~l~~~~p~~l~~  761 (1009)
                      .|..|..+++|++|++++|++++..|..|..+++|++|+|++|++++..|..+. .+++|+.|++++|++++..+..+..
T Consensus       315 ~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~-~l~~L~~L~L~~N~l~~~~~~~~~~  393 (455)
T 3v47_A          315 DDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFL-GLPNLKELALDTNQLKSVPDGIFDR  393 (455)
T ss_dssp             CTTTTTTCTTCCEEECCSSCCCEECGGGGTTCTTCCEEECCSSCCCEECTTTTT-TCTTCCEEECCSSCCSCCCTTTTTT
T ss_pred             ChhHhcCcccCCEEECCCCccCCcChhHhcCcccCCEEECCCCcccccChhhcc-ccccccEEECCCCccccCCHhHhcc
Confidence            777777788888888888888777777778888888888888888766676665 4788888888888888666666788


Q ss_pred             CCCCCEEEccCCcCCCCCC
Q 036375          762 LSSLQVLDLAENNLTGSIP  780 (1009)
Q Consensus       762 l~~L~~L~Ls~N~l~~~~p  780 (1009)
                      +++|++|++++|++++..|
T Consensus       394 l~~L~~L~l~~N~l~~~~~  412 (455)
T 3v47_A          394 LTSLQKIWLHTNPWDCSCP  412 (455)
T ss_dssp             CTTCCEEECCSSCBCCCTT
T ss_pred             CCcccEEEccCCCcccCCC
Confidence            8999999999999998877

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=100.00  E-value=1.1e-37  Score=341.74  Aligned_cols=289  Identities=25%  Similarity=0.427  Sum_probs=204.8

Q ss_pred             CCCHHHHHHHHHhhhcCCCCCCCccCCC-CCCCCC--ccceeecCCC--CcEEEEecCCCC--C---CCCCCCCCCcCCE
Q 036375           31 NCSENDLDALIDFKNGLEDPESRLASWK-GSNCCQ--WHGISCDDDT--GAIVAINLGNPY--H---VVNSDSSGSLLEY  100 (1009)
Q Consensus        31 ~~~~~~~~~ll~~k~~~~~~~~~~~~W~-~~~~c~--w~gv~c~~~~--~~v~~l~l~~~~--g---i~~~l~~l~~L~~  100 (1009)
                      .|.++|++||++||+++.||. .+++|+ +++||.  |.||+|+..+  ++|+.|++++..  |   +|+.++++++|++
T Consensus         2 ~c~~~~~~aL~~~k~~~~~~~-~l~~W~~~~~~C~~~w~gv~C~~~~~~~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~   80 (313)
T 1ogq_A            2 LCNPQDKQALLQIKKDLGNPT-TLSSWLPTTDCCNRTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNF   80 (313)
T ss_dssp             CSCHHHHHHHHHHHHHTTCCG-GGTTCCTTSCTTTTCSTTEEECCSSSCCCEEEEEEECCCCSSCEECCGGGGGCTTCSE
T ss_pred             CCCHHHHHHHHHHHHhcCCcc-cccCCCCCCCCCcCCCcceEeCCCCCCceEEEEECCCCCccCCcccChhHhCCCCCCe
Confidence            699999999999999998886 788998 578998  9999998765  899999988764  3   6778888888888


Q ss_pred             EeCCC-CCCCCCCCCcccCCCCCCceeecccCCCCccCCCCCCCCCCCCeeeCCCccccccCCCcccccCCCCCCeEEcC
Q 036375          101 LDLSF-NTFNDIPIPEFLGSLENLQYLNLSEAGFTGVVPSSLGNLHRLQYFDVSAELFALSADSLDWLTGLVSLKHLAMN  179 (1009)
Q Consensus       101 LdLs~-~~~~~~~lp~~i~~l~~L~~L~Ls~~~~~~~lp~~l~~L~~L~~L~Ls~~~~~~~~~~~~~l~~l~~L~~L~l~  179 (1009)
                      |+|++ |.+.+ .+|..++.+++|++|+|++|.+.+.+|..++++++|++|++++|.+.                     
T Consensus        81 L~L~~~n~l~~-~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~---------------------  138 (313)
T 1ogq_A           81 LYIGGINNLVG-PIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALS---------------------  138 (313)
T ss_dssp             EEEEEETTEES-CCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEE---------------------
T ss_pred             eeCCCCCcccc-cCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCEEeCCCCccC---------------------
Confidence            88884 77776 67888888888888888888888788888888888888888877432                     


Q ss_pred             CccCCCCcchhhhhhcCCCCccEEEcCCCcCCCCCCCCCCCCCC-CCcEEECCCCCCCCCchhhhhcCCCCcEEEccCCc
Q 036375          180 RVDLSLVGSEWLGILKNLPNLTELHLSVCGLTGSITSITPVNLT-SPAVLDLSLNHFNSLFPNWLVNISTLVYVDLSDCD  258 (1009)
Q Consensus       180 ~~~l~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~-~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~L~~n~  258 (1009)
                           +   .++..+..+++|++|++++|.+++.+|..+ ..++ +|++|++++|.+++.+|..+..++ |++|++++|.
T Consensus       139 -----~---~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l-~~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L~~L~Ls~N~  208 (313)
T 1ogq_A          139 -----G---TLPPSISSLPNLVGITFDGNRISGAIPDSY-GSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRNM  208 (313)
T ss_dssp             -----S---CCCGGGGGCTTCCEEECCSSCCEEECCGGG-GCCCTTCCEEECCSSEEEEECCGGGGGCC-CSEEECCSSE
T ss_pred             -----C---cCChHHhcCCCCCeEECcCCcccCcCCHHH-hhhhhcCcEEECcCCeeeccCChHHhCCc-ccEEECcCCc
Confidence                 1   134556667777777777777776666655 4554 777777777777777777777776 7777777777


Q ss_pred             CcccCCcccCCCCCCCEEEcCCCCCCCCcccccccCCCCCccEEEcccccccccCCccccCCCCCCEEEccCCcccccCc
Q 036375          259 LYGRIPIGFGELPNLQYLSLAGNNNLSGSCSQLFRGSWKKIQILNFASNKLHGKLPSSVANMTSLTNFDLFDKKVEGGIP  338 (1009)
Q Consensus       259 ~~~~~p~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~~~~~~~  338 (1009)
                      +.+.+|..+..+++|++|++++|.+  .+..+. +..+++|++|++++|.+.+.+|..+..+++|++|++++|.+++.+|
T Consensus       209 l~~~~~~~~~~l~~L~~L~L~~N~l--~~~~~~-~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip  285 (313)
T 1ogq_A          209 LEGDASVLFGSDKNTQKIHLAKNSL--AFDLGK-VGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIP  285 (313)
T ss_dssp             EEECCGGGCCTTSCCSEEECCSSEE--CCBGGG-CCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECC
T ss_pred             ccCcCCHHHhcCCCCCEEECCCCce--eeecCc-ccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCcccccCC
Confidence            7777777777777777777777642  222222 3445555555555555555555555555555555555555555555


Q ss_pred             hhhhcccCCCEEEcCCCc
Q 036375          339 SSIARLCYLKEFDLSGNN  356 (1009)
Q Consensus       339 ~~l~~l~~L~~L~l~~n~  356 (1009)
                      .. ..+++|+.+++++|.
T Consensus       286 ~~-~~l~~L~~l~l~~N~  302 (313)
T 1ogq_A          286 QG-GNLQRFDVSAYANNK  302 (313)
T ss_dssp             CS-TTGGGSCGGGTCSSS
T ss_pred             CC-ccccccChHHhcCCC
Confidence            43 445555555555554

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=100.00  E-value=4.7e-35  Score=337.06  Aligned_cols=415  Identities=20%  Similarity=0.216  Sum_probs=201.3

Q ss_pred             ccCCCCCccEEEcccccccccCCccccCCCCCCEEEccCCcccccCchhhhcccCCCEEEcCCCcCCCCCCccccccccc
Q 036375          292 FRGSWKKIQILNFASNKLHGKLPSSVANMTSLTNFDLFDKKVEGGIPSSIARLCYLKEFDLSGNNLTGSLPEILQGTDLC  371 (1009)
Q Consensus       292 ~~~~~~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~  371 (1009)
                      .++.+++|++|++++|.+.+. | .++.+++|++|++++|.+++. |  ++.+++|++|++++|.+++. +  +.     
T Consensus        37 ~~~~l~~L~~L~Ls~n~l~~~-~-~l~~l~~L~~L~Ls~n~l~~~-~--~~~l~~L~~L~Ls~N~l~~~-~--~~-----  103 (457)
T 3bz5_A           37 SEEQLATLTSLDCHNSSITDM-T-GIEKLTGLTKLICTSNNITTL-D--LSQNTNLTYLACDSNKLTNL-D--VT-----  103 (457)
T ss_dssp             EHHHHTTCCEEECCSSCCCCC-T-TGGGCTTCSEEECCSSCCSCC-C--CTTCTTCSEEECCSSCCSCC-C--CT-----
T ss_pred             ChhHcCCCCEEEccCCCcccC-h-hhcccCCCCEEEccCCcCCeE-c--cccCCCCCEEECcCCCCcee-e--cC-----
Confidence            334445555555555555432 3 345555555555555555442 2  44455555555555544432 1  11     


Q ss_pred             cCCCCCCCCCcEEECcCCcCcccCChhhcCCCCCCEEeCcCCcccccCCCCCCCCCCCcEEeCCCCcCCCCCCcccCCCC
Q 036375          372 VSSNSPLPSLISMRLGNNHLKGKLPEWLSQLENLVELTLSYNLLQGPIPASLGNLKNLTKLNLPGNQLNGTLPETLGSLP  451 (1009)
Q Consensus       372 ~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~  451 (1009)
                           .+++|++|++++|.+++ +|  +..+++|++|++++|.+++. +  ++.+++|++|++++|...+.+  .+..++
T Consensus       104 -----~l~~L~~L~L~~N~l~~-l~--~~~l~~L~~L~l~~N~l~~l-~--l~~l~~L~~L~l~~n~~~~~~--~~~~l~  170 (457)
T 3bz5_A          104 -----PLTKLTYLNCDTNKLTK-LD--VSQNPLLTYLNCARNTLTEI-D--VSHNTQLTELDCHLNKKITKL--DVTPQT  170 (457)
T ss_dssp             -----TCTTCCEEECCSSCCSC-CC--CTTCTTCCEEECTTSCCSCC-C--CTTCTTCCEEECTTCSCCCCC--CCTTCT
T ss_pred             -----CCCcCCEEECCCCcCCe-ec--CCCCCcCCEEECCCCcccee-c--cccCCcCCEEECCCCCccccc--ccccCC
Confidence                 34445555555554443 22  44444555555555544432 1  444444555555544333332  234444


Q ss_pred             CCCEEEccCcccccccchhhhccCCCCcEEeCCCCcccccCCCCCCCCccccEEecccCcCCCCCCcccccCCCccEEEc
Q 036375          452 ELSVLDVSSNSLTGIISEIHFSRLSKLKFLGLSSNSFILNVSSSWIPPFQVQSLNMRSCQLGPSFPSWLKTQQGVSFLDF  531 (1009)
Q Consensus       452 ~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l  531 (1009)
                      +|++|++++|.+++. +   +..+++|++|++++|.+                        .+.   .+..+++|++|++
T Consensus       171 ~L~~L~ls~n~l~~l-~---l~~l~~L~~L~l~~N~l------------------------~~~---~l~~l~~L~~L~L  219 (457)
T 3bz5_A          171 QLTTLDCSFNKITEL-D---VSQNKLLNRLNCDTNNI------------------------TKL---DLNQNIQLTFLDC  219 (457)
T ss_dssp             TCCEEECCSSCCCCC-C---CTTCTTCCEEECCSSCC------------------------SCC---CCTTCTTCSEEEC
T ss_pred             cCCEEECCCCcccee-c---cccCCCCCEEECcCCcC------------------------Cee---ccccCCCCCEEEC
Confidence            444555544444431 1   33444444444444433                        322   1444555555555


Q ss_pred             cCCcccCCCCchhhhccCcccEEEeccccccccCCCCCCCCCcCeEeccCCCCCCCCCCCCCCccEEEccCCcCCCcCCc
Q 036375          532 SNASISGPIPNWFWDISSKLSLLNVSLNQLQGQLPNPLNIAPFADVDFRSNLLEGPIPLPIVEIELLDLSNNHFSGPIPQ  611 (1009)
Q Consensus       532 s~n~i~~~~p~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~~l~~l~l~~n~l~~~~~~~~~~L~~L~Ls~n~l~~~ip~  611 (1009)
                      ++|++++ +|   ...+++|+.|++++|++++..                       +..+++|+.|++++|        
T Consensus       220 s~N~l~~-ip---~~~l~~L~~L~l~~N~l~~~~-----------------------~~~l~~L~~L~l~~n--------  264 (457)
T 3bz5_A          220 SSNKLTE-ID---VTPLTQLTYFDCSVNPLTELD-----------------------VSTLSKLTTLHCIQT--------  264 (457)
T ss_dssp             CSSCCSC-CC---CTTCTTCSEEECCSSCCSCCC-----------------------CTTCTTCCEEECTTC--------
T ss_pred             cCCcccc-cC---ccccCCCCEEEeeCCcCCCcC-----------------------HHHCCCCCEEeccCC--------
Confidence            5555554 33   123345555555555554421                       122334444444432        


Q ss_pred             hhhcCCCCccEEEccCCcccccCCcccccCCCCCeEEccCCcCCccCcCcccCCCCCCEEECCCCcCcccCCccccCCCC
Q 036375          612 NISGSMPNLIFLSVSGNRLTGKIPGSIGEMQLLQVIDLSRNSISGSISSSIGNCTFLKVLDLSYSSLSGVIPASLGQLTR  691 (1009)
Q Consensus       612 ~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~  691 (1009)
                             +|+.|++++|.+.+.+|  ++.+++|+.|++++|...+.+|.   ..++|+.|++++|             ++
T Consensus       265 -------~L~~L~l~~n~~~~~~~--~~~l~~L~~L~Ls~n~~l~~l~~---~~~~L~~L~l~~~-------------~~  319 (457)
T 3bz5_A          265 -------DLLEIDLTHNTQLIYFQ--AEGCRKIKELDVTHNTQLYLLDC---QAAGITELDLSQN-------------PK  319 (457)
T ss_dssp             -------CCSCCCCTTCTTCCEEE--CTTCTTCCCCCCTTCTTCCEEEC---TTCCCSCCCCTTC-------------TT
T ss_pred             -------CCCEEECCCCccCCccc--ccccccCCEEECCCCcccceecc---CCCcceEechhhc-------------cc
Confidence                   23344455554444443  34455566666666655555543   2233444443333             56


Q ss_pred             CCEEEccCccccCCCchhhcCCCCCCEEECcCCcccccCchhhhhcCcCCcEEEccCCcccccCCcccCCCCCCCEEEcc
Q 036375          692 LQSLHLNNNKLTGNLPSSFQNLTSLETLDLGNNRFSGNIPSLLGNGFVGLRILSLRSNAFSGEIPSKLSNLSSLQVLDLA  771 (1009)
Q Consensus       692 L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~ip~~l~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls  771 (1009)
                      |++|++++|++++. +  +..+++|+.|++++|++++         ++.|..|++++|.+.|.     ..+..|+.++++
T Consensus       320 L~~L~L~~N~l~~l-~--l~~l~~L~~L~l~~N~l~~---------l~~L~~L~l~~n~l~g~-----~~~~~l~~l~l~  382 (457)
T 3bz5_A          320 LVYLYLNNTELTEL-D--VSHNTKLKSLSCVNAHIQD---------FSSVGKIPALNNNFEAE-----GQTITMPKETLT  382 (457)
T ss_dssp             CCEEECTTCCCSCC-C--CTTCTTCSEEECCSSCCCB---------CTTGGGSSGGGTSEEEE-----EEEEECCCBCCB
T ss_pred             CCEEECCCCccccc-c--cccCCcCcEEECCCCCCCC---------ccccccccccCCcEEec-----ceeeecCccccc
Confidence            77777777777763 2  6677777777777777763         23455556777777665     234456667777


Q ss_pred             CCcCCCCCChhhhhhh-hhhhccchhhhhhccccccceeeceEEEeecCCCCCCCCceeEEEccCCccCCCCCccccC
Q 036375          772 ENNLTGSIPGSVGDLK-AMAHVQNIVKYLLFGRYRGIYYEENLVINTKGSSKDTPRLFHFIDLSGNNLHGDFPTQLTK  848 (1009)
Q Consensus       772 ~N~l~~~~p~~~~~l~-~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~Ls~N~l~~~~p~~l~~  848 (1009)
                      +|+++|.+|..+.+.. .+....        ....+.+......+.|++....+.........++|.++|.|+..+..
T Consensus       383 ~N~l~g~ip~~~~~~~~~~~~~~--------~~~~~~y~~~~~~i~~k~~~~~~~~~~y~~~~~~~~fsG~i~~p~~~  452 (457)
T 3bz5_A          383 NNSLTIAVSPDLLDQFGNPMNIE--------PGDGGVYDQATNTITWENLSTDNPAVTYTFTSENGAIVGTVTTPFEA  452 (457)
T ss_dssp             TTBEEEECCTTCBCTTSCCCEEE--------ESSSEEEETTTTEEEESSCCTTSCEECEEEECTTSSEEEEEEEEBC-
T ss_pred             cCcEEEEcChhHhcccCceeecc--------CCCCccccCCCCeeEEEeccCCCceEEEEEecCCcEEeeEecccccc
Confidence            7777777776543321 110000        00011222233345566655544443344444567777766655443

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=100.00  E-value=5e-35  Score=336.81  Aligned_cols=354  Identities=21%  Similarity=0.253  Sum_probs=209.9

Q ss_pred             CCCCCcEEECcCCcCcccCChhhcCCCCCCEEeCcCCcccccCCCCCCCCCCCcEEeCCCCcCCCCCCcccCCCCCCCEE
Q 036375          377 PLPSLISMRLGNNHLKGKLPEWLSQLENLVELTLSYNLLQGPIPASLGNLKNLTKLNLPGNQLNGTLPETLGSLPELSVL  456 (1009)
Q Consensus       377 ~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L  456 (1009)
                      .+++|++|++++|.+++. | .+..+++|++|++++|.+++. |  ++.+++|++|++++|.+++. +  ++++++|++|
T Consensus        40 ~l~~L~~L~Ls~n~l~~~-~-~l~~l~~L~~L~Ls~n~l~~~-~--~~~l~~L~~L~Ls~N~l~~~-~--~~~l~~L~~L  111 (457)
T 3bz5_A           40 QLATLTSLDCHNSSITDM-T-GIEKLTGLTKLICTSNNITTL-D--LSQNTNLTYLACDSNKLTNL-D--VTPLTKLTYL  111 (457)
T ss_dssp             HHTTCCEEECCSSCCCCC-T-TGGGCTTCSEEECCSSCCSCC-C--CTTCTTCSEEECCSSCCSCC-C--CTTCTTCCEE
T ss_pred             HcCCCCEEEccCCCcccC-h-hhcccCCCCEEEccCCcCCeE-c--cccCCCCCEEECcCCCCcee-e--cCCCCcCCEE
Confidence            355666666666666543 3 455566666666666665543 2  55566666666666665543 2  5555666666


Q ss_pred             EccCcccccccchhhhccCCCCcEEeCCCCcccccCCCCCCCCccccEEecccCcCCCCCCcccccCCCccEEEccCCcc
Q 036375          457 DVSSNSLTGIISEIHFSRLSKLKFLGLSSNSFILNVSSSWIPPFQVQSLNMRSCQLGPSFPSWLKTQQGVSFLDFSNASI  536 (1009)
Q Consensus       457 ~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~ls~n~i  536 (1009)
                      ++++|.+++. +   +..+++|++|++++|++...                         +  +..++            
T Consensus       112 ~L~~N~l~~l-~---~~~l~~L~~L~l~~N~l~~l-------------------------~--l~~l~------------  148 (457)
T 3bz5_A          112 NCDTNKLTKL-D---VSQNPLLTYLNCARNTLTEI-------------------------D--VSHNT------------  148 (457)
T ss_dssp             ECCSSCCSCC-C---CTTCTTCCEEECTTSCCSCC-------------------------C--CTTCT------------
T ss_pred             ECCCCcCCee-c---CCCCCcCCEEECCCCcccee-------------------------c--cccCC------------
Confidence            6666655542 1   44555555555555543211                         0  22233            


Q ss_pred             cCCCCchhhhccCcccEEEeccccccccCCCCCCCCCcCeEeccCCCCCCCCCCCCCCccEEEccCCcCCCcCCchhhcC
Q 036375          537 SGPIPNWFWDISSKLSLLNVSLNQLQGQLPNPLNIAPFADVDFRSNLLEGPIPLPIVEIELLDLSNNHFSGPIPQNISGS  616 (1009)
Q Consensus       537 ~~~~p~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~~l~~l~l~~n~l~~~~~~~~~~L~~L~Ls~n~l~~~ip~~~~~~  616 (1009)
                                   +|+.|++++|+..+.++                      ...+++|+.|++++|++++ +|   +..
T Consensus       149 -------------~L~~L~l~~n~~~~~~~----------------------~~~l~~L~~L~ls~n~l~~-l~---l~~  189 (457)
T 3bz5_A          149 -------------QLTELDCHLNKKITKLD----------------------VTPQTQLTTLDCSFNKITE-LD---VSQ  189 (457)
T ss_dssp             -------------TCCEEECTTCSCCCCCC----------------------CTTCTTCCEEECCSSCCCC-CC---CTT
T ss_pred             -------------cCCEEECCCCCcccccc----------------------cccCCcCCEEECCCCccce-ec---ccc
Confidence                         33334333332222111                      0012445555555555553 33   344


Q ss_pred             CCCccEEEccCCcccccCCcccccCCCCCeEEccCCcCCccCcCcccCCCCCCEEECCCCcCcccCCccccCCCCCCEEE
Q 036375          617 MPNLIFLSVSGNRLTGKIPGSIGEMQLLQVIDLSRNSISGSISSSIGNCTFLKVLDLSYSSLSGVIPASLGQLTRLQSLH  696 (1009)
Q Consensus       617 l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~  696 (1009)
                      +++|++|++++|++++.   .++.+++|++|++++|++++ +|  +..+++|++|++++|++++..   ++.+++|+.|+
T Consensus       190 l~~L~~L~l~~N~l~~~---~l~~l~~L~~L~Ls~N~l~~-ip--~~~l~~L~~L~l~~N~l~~~~---~~~l~~L~~L~  260 (457)
T 3bz5_A          190 NKLLNRLNCDTNNITKL---DLNQNIQLTFLDCSSNKLTE-ID--VTPLTQLTYFDCSVNPLTELD---VSTLSKLTTLH  260 (457)
T ss_dssp             CTTCCEEECCSSCCSCC---CCTTCTTCSEEECCSSCCSC-CC--CTTCTTCSEEECCSSCCSCCC---CTTCTTCCEEE
T ss_pred             CCCCCEEECcCCcCCee---ccccCCCCCEEECcCCcccc-cC--ccccCCCCEEEeeCCcCCCcC---HHHCCCCCEEe
Confidence            56666666666666654   25556666666666666665 33  556666666666666666542   33455566666


Q ss_pred             ccCccccCCCchhhcCCCCCCEEECcCCcccccCchhhhhcCcCCcEEEccCCcccccCCcccCCCCCCCEEEccCCcCC
Q 036375          697 LNNNKLTGNLPSSFQNLTSLETLDLGNNRFSGNIPSLLGNGFVGLRILSLRSNAFSGEIPSKLSNLSSLQVLDLAENNLT  776 (1009)
Q Consensus       697 L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~ip~~l~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~  776 (1009)
                      +++|              +|+.|++++|.+.+.+|..   .+++|+.|++++|...+.+|.   ..++|+.|++++|   
T Consensus       261 l~~n--------------~L~~L~l~~n~~~~~~~~~---~l~~L~~L~Ls~n~~l~~l~~---~~~~L~~L~l~~~---  317 (457)
T 3bz5_A          261 CIQT--------------DLLEIDLTHNTQLIYFQAE---GCRKIKELDVTHNTQLYLLDC---QAAGITELDLSQN---  317 (457)
T ss_dssp             CTTC--------------CCSCCCCTTCTTCCEEECT---TCTTCCCCCCTTCTTCCEEEC---TTCCCSCCCCTTC---
T ss_pred             ccCC--------------CCCEEECCCCccCCccccc---ccccCCEEECCCCcccceecc---CCCcceEechhhc---
Confidence            5543              3445666666666666532   356666666666666655553   2344555555544   


Q ss_pred             CCCChhhhhhhhhhhccchhhhhhccccccceeeceEEEeecCCCCCCCCceeEEEccCCccCCCCCccccCcCCCCeEE
Q 036375          777 GSIPGSVGDLKAMAHVQNIVKYLLFGRYRGIYYEENLVINTKGSSKDTPRLFHFIDLSGNNLHGDFPTQLTKLVGLVVLN  856 (1009)
Q Consensus       777 ~~~p~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~Ls~N~l~~~~p~~l~~l~~L~~L~  856 (1009)
                                +                                       .++.|+|++|++++. +  ++++++|+.|+
T Consensus       318 ----------~---------------------------------------~L~~L~L~~N~l~~l-~--l~~l~~L~~L~  345 (457)
T 3bz5_A          318 ----------P---------------------------------------KLVYLYLNNTELTEL-D--VSHNTKLKSLS  345 (457)
T ss_dssp             ----------T---------------------------------------TCCEEECTTCCCSCC-C--CTTCTTCSEEE
T ss_pred             ----------c---------------------------------------cCCEEECCCCccccc-c--cccCCcCcEEE
Confidence                      1                                       238899999999984 3  88999999999


Q ss_pred             ccCCcccccCCCCccCCCCCCEEeCCCCcCCCCCcccccCCCCCCeEeCCCCcceecCCCC
Q 036375          857 LSRNHIGGQIPENISGLHQLASLDLSSNNLSGGIPSSLSSLSFLGYINLSRNQLSGKIPFE  917 (1009)
Q Consensus       857 Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~ls~N~l~g~ip~~  917 (1009)
                      +++|++++        ++.|+.|++++|.++|.     ..+..|..+++++|+++|.||..
T Consensus       346 l~~N~l~~--------l~~L~~L~l~~n~l~g~-----~~~~~l~~l~l~~N~l~g~ip~~  393 (457)
T 3bz5_A          346 CVNAHIQD--------FSSVGKIPALNNNFEAE-----GQTITMPKETLTNNSLTIAVSPD  393 (457)
T ss_dssp             CCSSCCCB--------CTTGGGSSGGGTSEEEE-----EEEEECCCBCCBTTBEEEECCTT
T ss_pred             CCCCCCCC--------ccccccccccCCcEEec-----ceeeecCccccccCcEEEEcChh
Confidence            99999986        24677788999999986     34567888999999999999964

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=100.00  E-value=4.3e-35  Score=342.54  Aligned_cols=346  Identities=20%  Similarity=0.207  Sum_probs=283.5

Q ss_pred             EEEccCCcccCCCCchhhhccCcccEEEeccccccccCCCCCCCCCcCeEeccCCCCCCCCCCCCCCccEEEccCCcCCC
Q 036375          528 FLDFSNASISGPIPNWFWDISSKLSLLNVSLNQLQGQLPNPLNIAPFADVDFRSNLLEGPIPLPIVEIELLDLSNNHFSG  607 (1009)
Q Consensus       528 ~L~ls~n~i~~~~p~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~~l~~l~l~~n~l~~~~~~~~~~L~~L~Ls~n~l~~  607 (1009)
                      .++.++++++ .+|..+   .+.++.|++++|++++..+..+.                    .+++|++|++++|.+++
T Consensus        15 ~v~c~~~~l~-~ip~~~---~~~l~~L~L~~n~l~~~~~~~~~--------------------~l~~L~~L~L~~n~i~~   70 (477)
T 2id5_A           15 AVLCHRKRFV-AVPEGI---PTETRLLDLGKNRIKTLNQDEFA--------------------SFPHLEELELNENIVSA   70 (477)
T ss_dssp             EEECCSCCCS-SCCSCC---CTTCSEEECCSSCCCEECTTTTT--------------------TCTTCCEEECTTSCCCE
T ss_pred             EEEeCCCCcC-cCCCCC---CCCCcEEECCCCccceECHhHcc--------------------CCCCCCEEECCCCccCE
Confidence            4555555554 334332   24666777777776655444332                    24678888888888875


Q ss_pred             cCCchhhcCCCCccEEEccCCcccccCCcccccCCCCCeEEccCCcCCccCcCcccCCCCCCEEECCCCcCcccCCcccc
Q 036375          608 PIPQNISGSMPNLIFLSVSGNRLTGKIPGSIGEMQLLQVIDLSRNSISGSISSSIGNCTFLKVLDLSYSSLSGVIPASLG  687 (1009)
Q Consensus       608 ~ip~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~  687 (1009)
                      ..| ..+..+++|++|++++|++++..+..|.++++|++|++++|++.+..|..|..+++|++|++++|++++..|..|.
T Consensus        71 ~~~-~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~  149 (477)
T 2id5_A           71 VEP-GAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFS  149 (477)
T ss_dssp             ECT-TTTTTCTTCCEEECCSSCCCSCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSST
T ss_pred             eCh-hhhhCCccCCEEECCCCcCCccCcccccCCCCCCEEECCCCccccCChhHccccccCCEEECCCCccceeChhhcc
Confidence            444 4557889999999999999988888889999999999999999988899999999999999999999998888999


Q ss_pred             CCCCCCEEEccCccccCCCchhhcCCCCCCEEECcCCcccccCchhhhhcCcCCcEEEccCCcccccCCcccCCCCCCCE
Q 036375          688 QLTRLQSLHLNNNKLTGNLPSSFQNLTSLETLDLGNNRFSGNIPSLLGNGFVGLRILSLRSNAFSGEIPSKLSNLSSLQV  767 (1009)
Q Consensus       688 ~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~ip~~l~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~  767 (1009)
                      .+++|++|++++|++++..+..+..+++|+.|++++|.+.+..+..+. .+++|+.|++++|.+.+.+|.......+|+.
T Consensus       150 ~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~-~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~  228 (477)
T 2id5_A          150 GLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFK-RLYRLKVLEISHWPYLDTMTPNCLYGLNLTS  228 (477)
T ss_dssp             TCTTCCEEEEESCCCSSCCHHHHTTCTTCCEEEEESCCCCEECTTCSC-SCTTCCEEEEECCTTCCEECTTTTTTCCCSE
T ss_pred             CCCCCCEEECCCCcCcccChhHhcccCCCcEEeCCCCcCcEeChhhcc-cCcccceeeCCCCccccccCcccccCccccE
Confidence            999999999999999987777899999999999999999865554544 5899999999999988888888877889999


Q ss_pred             EEccCCcCCCCCChhhhhhhhhhhccchhhhhhccccccceeeceEEEeecCCCCCCCCceeEEEccCCccCCCCCcccc
Q 036375          768 LDLAENNLTGSIPGSVGDLKAMAHVQNIVKYLLFGRYRGIYYEENLVINTKGSSKDTPRLFHFIDLSGNNLHGDFPTQLT  847 (1009)
Q Consensus       768 L~Ls~N~l~~~~p~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~Ls~N~l~~~~p~~l~  847 (1009)
                      |++++|++++..+..+.+++.|                                       +.|+|++|.+++..+..|.
T Consensus       229 L~l~~n~l~~~~~~~~~~l~~L---------------------------------------~~L~Ls~n~l~~~~~~~~~  269 (477)
T 2id5_A          229 LSITHCNLTAVPYLAVRHLVYL---------------------------------------RFLNLSYNPISTIEGSMLH  269 (477)
T ss_dssp             EEEESSCCCSCCHHHHTTCTTC---------------------------------------CEEECCSSCCCEECTTSCT
T ss_pred             EECcCCcccccCHHHhcCcccc---------------------------------------CeeECCCCcCCccChhhcc
Confidence            9999999996555677777766                                       8999999999998899999


Q ss_pred             CcCCCCeEEccCCcccccCCCCccCCCCCCEEeCCCCcCCCCCcccccCCCCCCeEeCCCCcceecCCCCCCCCcccCCc
Q 036375          848 KLVGLVVLNLSRNHIGGQIPENISGLHQLASLDLSSNNLSGGIPSSLSSLSFLGYINLSRNQLSGKIPFEGHMTTFDASS  927 (1009)
Q Consensus       848 ~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~ls~N~l~g~ip~~~~~~~~~~~~  927 (1009)
                      ++++|+.|+|++|++++..|..|.++++|+.|+|++|++++..+..|..+++|++|++++|++++..+....+.......
T Consensus       270 ~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~c~c~~~~~~~~~~~~~  349 (477)
T 2id5_A          270 ELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLETLILDSNPLACDCRLLWVFRRRWRLN  349 (477)
T ss_dssp             TCTTCCEEECCSSCCSEECTTTBTTCTTCCEEECCSSCCSCCCGGGBSCGGGCCEEECCSSCEECSGGGHHHHTTTTSSC
T ss_pred             ccccCCEEECCCCccceECHHHhcCcccCCEEECCCCcCceeCHhHcCCCcccCEEEccCCCccCccchHhHHhhhhccc
Confidence            99999999999999999999999999999999999999999888899999999999999999987655322222223345


Q ss_pred             CCCCCCCCCCC
Q 036375          928 FAGNPGLCGDP  938 (1009)
Q Consensus       928 ~~~n~~lc~~~  938 (1009)
                      +.++...|..|
T Consensus       350 ~~~~~~~C~~p  360 (477)
T 2id5_A          350 FNRQQPTCATP  360 (477)
T ss_dssp             CTTCCCBEEES
T ss_pred             cCccCceeCCc
Confidence            66777777544

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=100.00  E-value=2.7e-34  Score=333.98  Aligned_cols=214  Identities=31%  Similarity=0.457  Sum_probs=125.8

Q ss_pred             CCCCCeEEccCCcCCccCcCcccCCCCCCEEECCCCcCcccCCccccCCCCCCEEEccCccccCCCchhhcCCCCCCEEE
Q 036375          641 MQLLQVIDLSRNSISGSISSSIGNCTFLKVLDLSYSSLSGVIPASLGQLTRLQSLHLNNNKLTGNLPSSFQNLTSLETLD  720 (1009)
Q Consensus       641 l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~  720 (1009)
                      +++|++|++++|.+++.  ..+..+++|++|++++|++++..|  ++.+++|+.|++++|++++.  ..+..+++|++|+
T Consensus       176 l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~  249 (466)
T 1o6v_A          176 LTTLERLDISSNKVSDI--SVLAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLKDI--GTLASLTNLTDLD  249 (466)
T ss_dssp             CTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEE
T ss_pred             CCCCCEEECcCCcCCCC--hhhccCCCCCEEEecCCccccccc--ccccCCCCEEECCCCCcccc--hhhhcCCCCCEEE
Confidence            33444444444443322  124444444455555444444333  34445555555555555432  2345555555555


Q ss_pred             CcCCcccccCchhhhhcCcCCcEEEccCCcccccCCcccCCCCCCCEEEccCCcCCCCCChhhhhhhhhhhccchhhhhh
Q 036375          721 LGNNRFSGNIPSLLGNGFVGLRILSLRSNAFSGEIPSKLSNLSSLQVLDLAENNLTGSIPGSVGDLKAMAHVQNIVKYLL  800 (1009)
Q Consensus       721 L~~N~l~~~ip~~l~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~~~~~~~~~~  800 (1009)
                      +++|.+++..|  +. .+++|+.|++++|.+++..+  +..+++|+.|++++|++++..|  ++.+++|           
T Consensus       250 l~~n~l~~~~~--~~-~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L-----------  311 (466)
T 1o6v_A          250 LANNQISNLAP--LS-GLTKLTELKLGANQISNISP--LAGLTALTNLELNENQLEDISP--ISNLKNL-----------  311 (466)
T ss_dssp             CCSSCCCCCGG--GT-TCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCSCCGG--GGGCTTC-----------
T ss_pred             CCCCccccchh--hh-cCCCCCEEECCCCccCcccc--ccCCCccCeEEcCCCcccCchh--hcCCCCC-----------
Confidence            55555553322  22 35566666666666654333  5566666666666666665433  4444444           


Q ss_pred             ccccccceeeceEEEeecCCCCCCCCceeEEEccCCccCCCCCccccCcCCCCeEEccCCcccccCCCCccCCCCCCEEe
Q 036375          801 FGRYRGIYYEENLVINTKGSSKDTPRLFHFIDLSGNNLHGDFPTQLTKLVGLVVLNLSRNHIGGQIPENISGLHQLASLD  880 (1009)
Q Consensus       801 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~  880 (1009)
                                                  +.|+|++|++++..|  +..+++|+.|++++|++++.  ..++++++|+.|+
T Consensus       312 ----------------------------~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~  359 (466)
T 1o6v_A          312 ----------------------------TYLTLYFNNISDISP--VSSLTKLQRLFFYNNKVSDV--SSLANLTNINWLS  359 (466)
T ss_dssp             ----------------------------SEEECCSSCCSCCGG--GGGCTTCCEEECCSSCCCCC--GGGTTCTTCCEEE
T ss_pred             ----------------------------CEEECcCCcCCCchh--hccCccCCEeECCCCccCCc--hhhccCCCCCEEe
Confidence                                        667777777776655  66777788888888877765  4577788888888


Q ss_pred             CCCCcCCCCCcccccCCCCCCeEeCCCCccee
Q 036375          881 LSSNNLSGGIPSSLSSLSFLGYINLSRNQLSG  912 (1009)
Q Consensus       881 Ls~N~l~~~ip~~l~~l~~L~~L~ls~N~l~g  912 (1009)
                      +++|++++.+|  +..+++|++|++++|++++
T Consensus       360 l~~n~l~~~~~--~~~l~~L~~L~l~~n~~~~  389 (466)
T 1o6v_A          360 AGHNQISDLTP--LANLTRITQLGLNDQAWTN  389 (466)
T ss_dssp             CCSSCCCBCGG--GTTCTTCCEEECCCEEEEC
T ss_pred             CCCCccCccch--hhcCCCCCEEeccCCcccC
Confidence            88888887766  7778888888888888877

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=100.00  E-value=1.7e-35  Score=324.17  Aligned_cols=258  Identities=32%  Similarity=0.575  Sum_probs=193.8

Q ss_pred             CCCeEEccCCcCCc--cCcCcccCCCCCCEEECCC-CcCcccCCccccCCCCCCEEEccCccccCCCchhhcCCCCCCEE
Q 036375          643 LLQVIDLSRNSISG--SISSSIGNCTFLKVLDLSY-SSLSGVIPASLGQLTRLQSLHLNNNKLTGNLPSSFQNLTSLETL  719 (1009)
Q Consensus       643 ~L~~L~Ls~N~l~~--~~p~~l~~l~~L~~L~Ls~-N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L  719 (1009)
                      +++.|++++|.+++  .+|..+.++++|++|++++ |.+.+.+|..|+.+++|++|++++|++++.+|..|..+++|++|
T Consensus        51 ~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L  130 (313)
T 1ogq_A           51 RVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTL  130 (313)
T ss_dssp             CEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEE
T ss_pred             eEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCEE
Confidence            34455555555554  4555555555555555553 55555555555555666666666666655556666666666666


Q ss_pred             ECcCCcccccCchhhhhcCcCCcEEEccCCcccccCCcccCCCC-CCCEEEccCCcCCCCCChhhhhhhhhhhccchhhh
Q 036375          720 DLGNNRFSGNIPSLLGNGFVGLRILSLRSNAFSGEIPSKLSNLS-SLQVLDLAENNLTGSIPGSVGDLKAMAHVQNIVKY  798 (1009)
Q Consensus       720 ~L~~N~l~~~ip~~l~~~l~~L~~L~L~~N~l~~~~p~~l~~l~-~L~~L~Ls~N~l~~~~p~~~~~l~~L~~~~~~~~~  798 (1009)
                      ++++|.+++.+|..+.. +++|++|++++|++++.+|..+..++ +|++|++++|++++.+|..+..++ |         
T Consensus       131 ~Ls~N~l~~~~p~~~~~-l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L---------  199 (313)
T 1ogq_A          131 DFSYNALSGTLPPSISS-LPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-L---------  199 (313)
T ss_dssp             ECCSSEEESCCCGGGGG-CTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCC-C---------
T ss_pred             eCCCCccCCcCChHHhc-CCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCc-c---------
Confidence            66666666566665553 66666666666666666666666666 777888888888777777776654 4         


Q ss_pred             hhccccccceeeceEEEeecCCCCCCCCceeEEEccCCccCCCCCccccCcCCCCeEEccCCcccccCCCCccCCCCCCE
Q 036375          799 LLFGRYRGIYYEENLVINTKGSSKDTPRLFHFIDLSGNNLHGDFPTQLTKLVGLVVLNLSRNHIGGQIPENISGLHQLAS  878 (1009)
Q Consensus       799 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~  878 (1009)
                                                    +.|+|++|.+++.+|..+..+++|+.|+|++|++++.+|. +..+++|++
T Consensus       200 ------------------------------~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~-~~~l~~L~~  248 (313)
T 1ogq_A          200 ------------------------------AFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGK-VGLSKNLNG  248 (313)
T ss_dssp             ------------------------------SEEECCSSEEEECCGGGCCTTSCCSEEECCSSEECCBGGG-CCCCTTCCE
T ss_pred             ------------------------------cEEECcCCcccCcCCHHHhcCCCCCEEECCCCceeeecCc-ccccCCCCE
Confidence                                          7888888888888899999999999999999999988776 888999999


Q ss_pred             EeCCCCcCCCCCcccccCCCCCCeEeCCCCcceecCCCCCCCCcccCCcCCCCCCCCCCCCCCCC
Q 036375          879 LDLSSNNLSGGIPSSLSSLSFLGYINLSRNQLSGKIPFEGHMTTFDASSFAGNPGLCGDPLPVKC  943 (1009)
Q Consensus       879 L~Ls~N~l~~~ip~~l~~l~~L~~L~ls~N~l~g~ip~~~~~~~~~~~~~~~n~~lc~~~~~~~c  943 (1009)
                      |++++|++++.+|..+..+++|++|++++|+++|.+|...++..+....+.+|+++||.|+. .|
T Consensus       249 L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~~~l~~L~~l~l~~N~~lc~~p~~-~C  312 (313)
T 1ogq_A          249 LDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQGGNLQRFDVSAYANNKCLCGSPLP-AC  312 (313)
T ss_dssp             EECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCCSTTGGGSCGGGTCSSSEEESTTSS-CC
T ss_pred             EECcCCcccCcCChHHhcCcCCCEEECcCCcccccCCCCccccccChHHhcCCCCccCCCCC-CC
Confidence            99999999999999999999999999999999999999888888888899999999998875 56

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=100.00  E-value=1.7e-33  Score=327.25  Aligned_cols=195  Identities=29%  Similarity=0.435  Sum_probs=118.6

Q ss_pred             cccCCCCCeEEccCCcCCccCcCcccCCCCCCEEECCCCcCcccCCccccCCCCCCEEEccCccccCCCchhhcCCCCCC
Q 036375          638 IGEMQLLQVIDLSRNSISGSISSSIGNCTFLKVLDLSYSSLSGVIPASLGQLTRLQSLHLNNNKLTGNLPSSFQNLTSLE  717 (1009)
Q Consensus       638 ~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~  717 (1009)
                      +..+++|++|++++|++.+..|  ++.+++|++|++++|++++.  ..+..+++|++|++++|.+++..+  +..+++|+
T Consensus       195 l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~  268 (466)
T 1o6v_A          195 LAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLKDI--GTLASLTNLTDLDLANNQISNLAP--LSGLTKLT  268 (466)
T ss_dssp             GGGCTTCSEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--GTTCTTCS
T ss_pred             hccCCCCCEEEecCCccccccc--ccccCCCCEEECCCCCcccc--hhhhcCCCCCEEECCCCccccchh--hhcCCCCC
Confidence            4444555555555555554433  44455555555555555532  235555566666666666554332  55566666


Q ss_pred             EEECcCCcccccCchhhhhcCcCCcEEEccCCcccccCCcccCCCCCCCEEEccCCcCCCCCChhhhhhhhhhhccchhh
Q 036375          718 TLDLGNNRFSGNIPSLLGNGFVGLRILSLRSNAFSGEIPSKLSNLSSLQVLDLAENNLTGSIPGSVGDLKAMAHVQNIVK  797 (1009)
Q Consensus       718 ~L~L~~N~l~~~ip~~l~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~~~~~~~  797 (1009)
                      +|++++|.+++ +|. +. .+++|+.|++++|++++..+  +..+++|+.|++++|++++..|  +..++.|        
T Consensus       269 ~L~l~~n~l~~-~~~-~~-~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L--------  333 (466)
T 1o6v_A          269 ELKLGANQISN-ISP-LA-GLTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDISP--VSSLTKL--------  333 (466)
T ss_dssp             EEECCSSCCCC-CGG-GT-TCTTCSEEECCSSCCSCCGG--GGGCTTCSEEECCSSCCSCCGG--GGGCTTC--------
T ss_pred             EEECCCCccCc-ccc-cc-CCCccCeEEcCCCcccCchh--hcCCCCCCEEECcCCcCCCchh--hccCccC--------
Confidence            66666666653 232 22 36666666666666654333  5566667777777777666544  4444444        


Q ss_pred             hhhccccccceeeceEEEeecCCCCCCCCceeEEEccCCccCCCCCccccCcCCCCeEEccCCcccccCCCCccCCCCCC
Q 036375          798 YLLFGRYRGIYYEENLVINTKGSSKDTPRLFHFIDLSGNNLHGDFPTQLTKLVGLVVLNLSRNHIGGQIPENISGLHQLA  877 (1009)
Q Consensus       798 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~  877 (1009)
                                                     +.|++++|.+++.  ..+.++++|+.|++++|++++.+|  +..+++|+
T Consensus       334 -------------------------------~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~  378 (466)
T 1o6v_A          334 -------------------------------QRLFFYNNKVSDV--SSLANLTNINWLSAGHNQISDLTP--LANLTRIT  378 (466)
T ss_dssp             -------------------------------CEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCCBCGG--GTTCTTCC
T ss_pred             -------------------------------CEeECCCCccCCc--hhhccCCCCCEEeCCCCccCccch--hhcCCCCC
Confidence                                           6677777777664  357777788888888888887776  77788888


Q ss_pred             EEeCCCCcCCC
Q 036375          878 SLDLSSNNLSG  888 (1009)
Q Consensus       878 ~L~Ls~N~l~~  888 (1009)
                      .|++++|.+++
T Consensus       379 ~L~l~~n~~~~  389 (466)
T 1o6v_A          379 QLGLNDQAWTN  389 (466)
T ss_dssp             EEECCCEEEEC
T ss_pred             EEeccCCcccC
Confidence            88888888876

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=100.00  E-value=9.6e-34  Score=331.09  Aligned_cols=304  Identities=23%  Similarity=0.260  Sum_probs=272.6

Q ss_pred             CCccEEEccCCcCCCcCCchhhcCCCCccEEEccCCcccccCCcccccCCCCCeEEccCCcCCccCcCcccCCCCCCEEE
Q 036375          593 VEIELLDLSNNHFSGPIPQNISGSMPNLIFLSVSGNRLTGKIPGSIGEMQLLQVIDLSRNSISGSISSSIGNCTFLKVLD  672 (1009)
Q Consensus       593 ~~L~~L~Ls~n~l~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~  672 (1009)
                      .+++.|++++|.+++ ++...+..+++|++|++++|.+++..|.+|.++++|++|++++|++++..+..|.++++|++|+
T Consensus        32 ~~l~~L~L~~n~l~~-~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~  110 (477)
T 2id5_A           32 TETRLLDLGKNRIKT-LNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLD  110 (477)
T ss_dssp             TTCSEEECCSSCCCE-ECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCSCCTTSSTTCTTCCEEE
T ss_pred             CCCcEEECCCCccce-ECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCcCCccCcccccCCCCCCEEE
Confidence            689999999999985 4445667899999999999999999999999999999999999999988778899999999999


Q ss_pred             CCCCcCcccCCccccCCCCCCEEEccCccccCCCchhhcCCCCCCEEECcCCcccccCchhhhhcCcCCcEEEccCCccc
Q 036375          673 LSYSSLSGVIPASLGQLTRLQSLHLNNNKLTGNLPSSFQNLTSLETLDLGNNRFSGNIPSLLGNGFVGLRILSLRSNAFS  752 (1009)
Q Consensus       673 Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~ip~~l~~~l~~L~~L~L~~N~l~  752 (1009)
                      +++|++++..|..|..+++|++|++++|.+++..+..|..+++|++|++++|.++ .+|...+..+++|+.|++++|.+.
T Consensus       111 Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~~~~~~l~~l~~L~~L~l~~n~i~  189 (477)
T 2id5_A          111 ISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLT-SIPTEALSHLHGLIVLRLRHLNIN  189 (477)
T ss_dssp             CTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCS-SCCHHHHTTCTTCCEEEEESCCCC
T ss_pred             CCCCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCc-ccChhHhcccCCCcEEeCCCCcCc
Confidence            9999999999999999999999999999999988999999999999999999998 555554446999999999999999


Q ss_pred             ccCCcccCCCCCCCEEEccCCcCCCCCChhhhhhhhhhhccchhhhhhccccccceeeceEEEeecCCCCCCCCceeEEE
Q 036375          753 GEIPSKLSNLSSLQVLDLAENNLTGSIPGSVGDLKAMAHVQNIVKYLLFGRYRGIYYEENLVINTKGSSKDTPRLFHFID  832 (1009)
Q Consensus       753 ~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~  832 (1009)
                      +..+..+..+++|+.|++++|++.+.+|.......+|                                       +.|+
T Consensus       190 ~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L---------------------------------------~~L~  230 (477)
T 2id5_A          190 AIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNL---------------------------------------TSLS  230 (477)
T ss_dssp             EECTTCSCSCTTCCEEEEECCTTCCEECTTTTTTCCC---------------------------------------SEEE
T ss_pred             EeChhhcccCcccceeeCCCCccccccCcccccCccc---------------------------------------cEEE
Confidence            8888899999999999999999988887665444333                                       8999


Q ss_pred             ccCCccCCCCCccccCcCCCCeEEccCCcccccCCCCccCCCCCCEEeCCCCcCCCCCcccccCCCCCCeEeCCCCccee
Q 036375          833 LSGNNLHGDFPTQLTKLVGLVVLNLSRNHIGGQIPENISGLHQLASLDLSSNNLSGGIPSSLSSLSFLGYINLSRNQLSG  912 (1009)
Q Consensus       833 Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~ls~N~l~g  912 (1009)
                      |++|++++..+..+.++++|+.|+|++|++++..+..|.++++|+.|+|++|++++..|..|..+++|++||+++|++++
T Consensus       231 l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~  310 (477)
T 2id5_A          231 ITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTT  310 (477)
T ss_dssp             EESSCCCSCCHHHHTTCTTCCEEECCSSCCCEECTTSCTTCTTCCEEECCSSCCSEECTTTBTTCTTCCEEECCSSCCSC
T ss_pred             CcCCcccccCHHHhcCccccCeeECCCCcCCccChhhccccccCCEEECCCCccceECHHHhcCcccCCEEECCCCcCce
Confidence            99999997666789999999999999999999999999999999999999999999999999999999999999999998


Q ss_pred             cCCCC-CCCCcccCCcCCCCCCCCCC
Q 036375          913 KIPFE-GHMTTFDASSFAGNPGLCGD  937 (1009)
Q Consensus       913 ~ip~~-~~~~~~~~~~~~~n~~lc~~  937 (1009)
                      ..|.. ..+..+....+.+||+.|.+
T Consensus       311 ~~~~~~~~l~~L~~L~l~~N~l~c~c  336 (477)
T 2id5_A          311 LEESVFHSVGNLETLILDSNPLACDC  336 (477)
T ss_dssp             CCGGGBSCGGGCCEEECCSSCEECSG
T ss_pred             eCHhHcCCCcccCEEEccCCCccCcc
Confidence            65532 33455666778999998864

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=100.00  E-value=3e-32  Score=326.54  Aligned_cols=335  Identities=21%  Similarity=0.238  Sum_probs=277.7

Q ss_pred             CCCccEEEccCCcccCCCCchhhhccCcccEEEeccccccccCCCCCCCCCcCeEeccCCCCCCCCCCCCCCccEEEccC
Q 036375          523 QQGVSFLDFSNASISGPIPNWFWDISSKLSLLNVSLNQLQGQLPNPLNIAPFADVDFRSNLLEGPIPLPIVEIELLDLSN  602 (1009)
Q Consensus       523 ~~~L~~L~ls~n~i~~~~p~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~~l~~l~l~~n~l~~~~~~~~~~L~~L~Ls~  602 (1009)
                      +.+++.+++++|.+.. +|..++..+++|+.|++++|.+++..|..+.                    .+++|+.|++++
T Consensus        50 l~~l~~l~l~~~~l~~-lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~--------------------~l~~L~~L~L~~  108 (597)
T 3oja_B           50 LNNQKIVTFKNSTMRK-LPAALLDSFRQVELLNLNDLQIEEIDTYAFA--------------------YAHTIQKLYMGF  108 (597)
T ss_dssp             GCCCSEEEESSCEESE-ECTHHHHHCCCCSEEECTTSCCCEECTTTTT--------------------TCTTCCEEECCS
T ss_pred             CCCceEEEeeCCCCCC-cCHHHHccCCCCcEEECCCCCCCCCChHHhc--------------------CCCCCCEEECCC
Confidence            4567778888877764 4555555667888888888887766554432                    246788889999


Q ss_pred             CcCCCcCCchhhcCCCCccEEEccCCcccccCCcccccCCCCCeEEccCCcCCccCcCcccCCCCCCEEECCCCcCcccC
Q 036375          603 NHFSGPIPQNISGSMPNLIFLSVSGNRLTGKIPGSIGEMQLLQVIDLSRNSISGSISSSIGNCTFLKVLDLSYSSLSGVI  682 (1009)
Q Consensus       603 n~l~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~  682 (1009)
                      |.+++ +|...++.+++|++|++++|.+++..+..|+++++|++|++++|.+++..|..|..+++|++|++++|.+++..
T Consensus       109 n~l~~-~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~  187 (597)
T 3oja_B          109 NAIRY-LPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVD  187 (597)
T ss_dssp             SCCCC-CCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBCC
T ss_pred             CcCCC-CCHHHHcCCCCCCEEEeeCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCcC
Confidence            98885 55566778999999999999999887777899999999999999999999989999999999999999998753


Q ss_pred             CccccCCCCCCEEEccCccccCCCchhhcCCCCCCEEECcCCcccccCchhhhhcCcCCcEEEccCCcccccCCcccCCC
Q 036375          683 PASLGQLTRLQSLHLNNNKLTGNLPSSFQNLTSLETLDLGNNRFSGNIPSLLGNGFVGLRILSLRSNAFSGEIPSKLSNL  762 (1009)
Q Consensus       683 p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~ip~~l~~~l~~L~~L~L~~N~l~~~~p~~l~~l  762 (1009)
                         ++.+++|+.|++++|.+++     +...++|+.|++++|.+. .+|...   .++|+.|++++|.+++  +..+..+
T Consensus       188 ---~~~l~~L~~L~l~~n~l~~-----l~~~~~L~~L~ls~n~l~-~~~~~~---~~~L~~L~L~~n~l~~--~~~l~~l  253 (597)
T 3oja_B          188 ---LSLIPSLFHANVSYNLLST-----LAIPIAVEELDASHNSIN-VVRGPV---NVELTILKLQHNNLTD--TAWLLNY  253 (597)
T ss_dssp             ---GGGCTTCSEEECCSSCCSE-----EECCTTCSEEECCSSCCC-EEECSC---CSCCCEEECCSSCCCC--CGGGGGC
T ss_pred             ---hhhhhhhhhhhcccCcccc-----ccCCchhheeeccCCccc-cccccc---CCCCCEEECCCCCCCC--ChhhccC
Confidence               5667899999999998875     345578999999999997 455442   5789999999999986  4678999


Q ss_pred             CCCCEEEccCCcCCCCCChhhhhhhhhhhccchhhhhhccccccceeeceEEEeecCCCCCCCCceeEEEccCCccCCCC
Q 036375          763 SSLQVLDLAENNLTGSIPGSVGDLKAMAHVQNIVKYLLFGRYRGIYYEENLVINTKGSSKDTPRLFHFIDLSGNNLHGDF  842 (1009)
Q Consensus       763 ~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~Ls~N~l~~~~  842 (1009)
                      ++|+.|++++|.+++.+|..++.++.|                                       +.|+|++|.+++ +
T Consensus       254 ~~L~~L~Ls~N~l~~~~~~~~~~l~~L---------------------------------------~~L~Ls~N~l~~-l  293 (597)
T 3oja_B          254 PGLVEVDLSYNELEKIMYHPFVKMQRL---------------------------------------ERLYISNNRLVA-L  293 (597)
T ss_dssp             TTCSEEECCSSCCCEEESGGGTTCSSC---------------------------------------CEEECTTSCCCE-E
T ss_pred             CCCCEEECCCCccCCCCHHHhcCccCC---------------------------------------CEEECCCCCCCC-C
Confidence            999999999999999999999888877                                       899999999997 5


Q ss_pred             CccccCcCCCCeEEccCCcccccCCCCccCCCCCCEEeCCCCcCCCCCcccccCCCCCCeEeCCCCcceecCCCCCCCCc
Q 036375          843 PTQLTKLVGLVVLNLSRNHIGGQIPENISGLHQLASLDLSSNNLSGGIPSSLSSLSFLGYINLSRNQLSGKIPFEGHMTT  922 (1009)
Q Consensus       843 p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~ls~N~l~g~ip~~~~~~~  922 (1009)
                      |..+..+++|+.|+|++|.++ .+|..++.+++|+.|+|++|.+++..   +..+++|++|++++|++++..+. ..+..
T Consensus       294 ~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~l~~L~~L~L~~N~l~~~~---~~~~~~L~~L~l~~N~~~~~~~~-~~~~~  368 (597)
T 3oja_B          294 NLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIVTLK---LSTHHTLKNLTLSHNDWDCNSLR-ALFRN  368 (597)
T ss_dssp             ECSSSCCTTCCEEECCSSCCC-CCGGGHHHHTTCSEEECCSSCCCCCC---CCTTCCCSEEECCSSCEEHHHHH-HHTTT
T ss_pred             CcccccCCCCcEEECCCCCCC-ccCcccccCCCCCEEECCCCCCCCcC---hhhcCCCCEEEeeCCCCCChhHH-HHHHH
Confidence            777888999999999999999 57778899999999999999999753   67788999999999999987432 23455


Q ss_pred             ccCCcCCCCCCCCCCC
Q 036375          923 FDASSFAGNPGLCGDP  938 (1009)
Q Consensus       923 ~~~~~~~~n~~lc~~~  938 (1009)
                      +....+.+++..|+.+
T Consensus       369 ~~~~~~~~~~~~C~~~  384 (597)
T 3oja_B          369 VARPAVDDADQHCKID  384 (597)
T ss_dssp             CCTTTBCCCCCCCCTT
T ss_pred             HhhhccccccccCCcc
Confidence            6666778888899763

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=100.00  E-value=4.8e-32  Score=307.71  Aligned_cols=335  Identities=21%  Similarity=0.238  Sum_probs=260.4

Q ss_pred             CCCccEEEccCCcccCCCCchhhhccCcccEEEeccccccccCCCCCCCCCcCeEeccCCCCCCCCCCCCCCccEEEccC
Q 036375          523 QQGVSFLDFSNASISGPIPNWFWDISSKLSLLNVSLNQLQGQLPNPLNIAPFADVDFRSNLLEGPIPLPIVEIELLDLSN  602 (1009)
Q Consensus       523 ~~~L~~L~ls~n~i~~~~p~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~~l~~l~l~~n~l~~~~~~~~~~L~~L~Ls~  602 (1009)
                      +++++.+++++|.++. +|..++..+++|++|++++|.+++..+..+.                    .+++|++|++++
T Consensus        44 l~~l~~l~l~~~~l~~-l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~--------------------~l~~L~~L~L~~  102 (390)
T 3o6n_A           44 LNNQKIVTFKNSTMRK-LPAALLDSFRQVELLNLNDLQIEEIDTYAFA--------------------YAHTIQKLYMGF  102 (390)
T ss_dssp             GCCCSEEEEESCEESE-ECTHHHHHCCCCSEEECTTSCCCEECTTTTT--------------------TCTTCCEEECCS
T ss_pred             cCCceEEEecCCchhh-CChhHhcccccCcEEECCCCcccccChhhcc--------------------CCCCcCEEECCC
Confidence            4667778888877663 4555555667788888888877755443332                    246788888888


Q ss_pred             CcCCCcCCchhhcCCCCccEEEccCCcccccCCcccccCCCCCeEEccCCcCCccCcCcccCCCCCCEEECCCCcCcccC
Q 036375          603 NHFSGPIPQNISGSMPNLIFLSVSGNRLTGKIPGSIGEMQLLQVIDLSRNSISGSISSSIGNCTFLKVLDLSYSSLSGVI  682 (1009)
Q Consensus       603 n~l~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~  682 (1009)
                      |.+.+ ++...+..+++|++|++++|+++...+..|.++++|++|++++|++++..|..+..+++|++|++++|++++. 
T Consensus       103 n~l~~-~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~-  180 (390)
T 3o6n_A          103 NAIRY-LPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHV-  180 (390)
T ss_dssp             SCCCC-CCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBC-
T ss_pred             CCCCc-CCHHHhcCCCCCCEEECCCCccCcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCcc-
Confidence            88874 4445667788999999999998876666678889999999999999888888888999999999999998865 


Q ss_pred             CccccCCCCCCEEEccCccccCCCchhhcCCCCCCEEECcCCcccccCchhhhhcCcCCcEEEccCCcccccCCcccCCC
Q 036375          683 PASLGQLTRLQSLHLNNNKLTGNLPSSFQNLTSLETLDLGNNRFSGNIPSLLGNGFVGLRILSLRSNAFSGEIPSKLSNL  762 (1009)
Q Consensus       683 p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~ip~~l~~~l~~L~~L~L~~N~l~~~~p~~l~~l  762 (1009)
                        .+..+++|+.|++++|.+++     +...++|++|++++|.+. .+|..   ..++|+.|++++|.+++.  ..+..+
T Consensus       181 --~~~~l~~L~~L~l~~n~l~~-----~~~~~~L~~L~l~~n~l~-~~~~~---~~~~L~~L~l~~n~l~~~--~~l~~l  247 (390)
T 3o6n_A          181 --DLSLIPSLFHANVSYNLLST-----LAIPIAVEELDASHNSIN-VVRGP---VNVELTILKLQHNNLTDT--AWLLNY  247 (390)
T ss_dssp             --CGGGCTTCSEEECCSSCCSE-----EECCSSCSEEECCSSCCC-EEECC---CCSSCCEEECCSSCCCCC--GGGGGC
T ss_pred             --ccccccccceeecccccccc-----cCCCCcceEEECCCCeee-ecccc---ccccccEEECCCCCCccc--HHHcCC
Confidence              25667889999999998874     234568999999999987 45554   267899999999999854  568889


Q ss_pred             CCCCEEEccCCcCCCCCChhhhhhhhhhhccchhhhhhccccccceeeceEEEeecCCCCCCCCceeEEEccCCccCCCC
Q 036375          763 SSLQVLDLAENNLTGSIPGSVGDLKAMAHVQNIVKYLLFGRYRGIYYEENLVINTKGSSKDTPRLFHFIDLSGNNLHGDF  842 (1009)
Q Consensus       763 ~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~Ls~N~l~~~~  842 (1009)
                      ++|++|++++|++++..|..+..+++|                                       +.|+|++|++++ +
T Consensus       248 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L---------------------------------------~~L~L~~n~l~~-~  287 (390)
T 3o6n_A          248 PGLVEVDLSYNELEKIMYHPFVKMQRL---------------------------------------ERLYISNNRLVA-L  287 (390)
T ss_dssp             TTCSEEECCSSCCCEEESGGGTTCSSC---------------------------------------CEEECCSSCCCE-E
T ss_pred             CCccEEECCCCcCCCcChhHccccccC---------------------------------------CEEECCCCcCcc-c
Confidence            999999999999998888888887777                                       889999999986 5


Q ss_pred             CccccCcCCCCeEEccCCcccccCCCCccCCCCCCEEeCCCCcCCCCCcccccCCCCCCeEeCCCCcceecCCCCCCCCc
Q 036375          843 PTQLTKLVGLVVLNLSRNHIGGQIPENISGLHQLASLDLSSNNLSGGIPSSLSSLSFLGYINLSRNQLSGKIPFEGHMTT  922 (1009)
Q Consensus       843 p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~ls~N~l~g~ip~~~~~~~  922 (1009)
                      |..+..+++|++|+|++|+++ .+|..++.+++|++|++++|++++. |  +..+++|++|++++|++++.... ..+..
T Consensus       288 ~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~l~~L~~L~L~~N~i~~~-~--~~~~~~L~~L~l~~N~~~~~~~~-~~~~~  362 (390)
T 3o6n_A          288 NLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIVTL-K--LSTHHTLKNLTLSHNDWDCNSLR-ALFRN  362 (390)
T ss_dssp             ECSSSCCTTCCEEECCSSCCC-CCGGGHHHHTTCSEEECCSSCCCCC-C--CCTTCCCSEEECCSSCEEHHHHH-HHTTT
T ss_pred             CcccCCCCCCCEEECCCCcce-ecCccccccCcCCEEECCCCcccee-C--chhhccCCEEEcCCCCccchhHH-HHHHH
Confidence            667788899999999999998 4566788899999999999999865 3  67788999999999999875322 12334


Q ss_pred             ccCCcCCCCCCCCCCC
Q 036375          923 FDASSFAGNPGLCGDP  938 (1009)
Q Consensus       923 ~~~~~~~~n~~lc~~~  938 (1009)
                      +....+.+++..|+.+
T Consensus       363 ~~~~~~~~~~~~c~~~  378 (390)
T 3o6n_A          363 VARPAVDDADQHCKID  378 (390)
T ss_dssp             CCTTTBCCCCSCCCTT
T ss_pred             HHhhcccccCceeccc
Confidence            4445566676667643

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=99.97  E-value=4.1e-30  Score=291.77  Aligned_cols=310  Identities=20%  Similarity=0.209  Sum_probs=175.6

Q ss_pred             CCCCCEEEccCCcccccCchhhhcccCCCEEEcCCCcCCCCCCccccccccccCCCCCCCCCcEEECcCCcCcccCChhh
Q 036375          320 MTSLTNFDLFDKKVEGGIPSSIARLCYLKEFDLSGNNLTGSLPEILQGTDLCVSSNSPLPSLISMRLGNNHLKGKLPEWL  399 (1009)
Q Consensus       320 l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l  399 (1009)
                      +++++.|+++++.+....+..+..+++|++|++++|.+.+..+..+.          .+++|++|++++|.+++..|..+
T Consensus        44 l~~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~----------~l~~L~~L~L~~n~l~~~~~~~~  113 (390)
T 3o6n_A           44 LNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFA----------YAHTIQKLYMGFNAIRYLPPHVF  113 (390)
T ss_dssp             GCCCSEEEEESCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTT----------TCTTCCEEECCSSCCCCCCTTTT
T ss_pred             cCCceEEEecCCchhhCChhHhcccccCcEEECCCCcccccChhhcc----------CCCCcCEEECCCCCCCcCCHHHh
Confidence            46677777777766654444466677777777777766655554444          56677777777777776666667


Q ss_pred             cCCCCCCEEeCcCCcccccCCCCCCCCCCCcEEeCCCCcCCCCCCcccCCCCCCCEEEccCcccccccchhhhccCCCCc
Q 036375          400 SQLENLVELTLSYNLLQGPIPASLGNLKNLTKLNLPGNQLNGTLPETLGSLPELSVLDVSSNSLTGIISEIHFSRLSKLK  479 (1009)
Q Consensus       400 ~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~  479 (1009)
                      ..+++|++|++++|.++...+..|.++++|++|++++|.+++..|..+..+++|++|++++|.+++.    .+..+++|+
T Consensus       114 ~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~----~~~~l~~L~  189 (390)
T 3o6n_A          114 QNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHV----DLSLIPSLF  189 (390)
T ss_dssp             TTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBC----CGGGCTTCS
T ss_pred             cCCCCCCEEECCCCccCcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCcc----ccccccccc
Confidence            7777777777777777754444567777777777777777766666677777777777777777643    244566666


Q ss_pred             EEeCCCCcccccCCCCCCCCccccEEecccCcCCCCCCcccccCCCccEEEccCCcccCCCCchhhhccCcccEEEeccc
Q 036375          480 FLGLSSNSFILNVSSSWIPPFQVQSLNMRSCQLGPSFPSWLKTQQGVSFLDFSNASISGPIPNWFWDISSKLSLLNVSLN  559 (1009)
Q Consensus       480 ~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~ls~n~i~~~~p~~~~~~~~~L~~L~ls~n  559 (1009)
                      .|++++|.+...                             ...                         ++++.|++++|
T Consensus       190 ~L~l~~n~l~~~-----------------------------~~~-------------------------~~L~~L~l~~n  215 (390)
T 3o6n_A          190 HANVSYNLLSTL-----------------------------AIP-------------------------IAVEELDASHN  215 (390)
T ss_dssp             EEECCSSCCSEE-----------------------------ECC-------------------------SSCSEEECCSS
T ss_pred             eeeccccccccc-----------------------------CCC-------------------------CcceEEECCCC
Confidence            666666644210                             111                         12333333333


Q ss_pred             cccccCCCCCCCCCcCeEeccCCCCCCCCCCCCCCccEEEccCCcCCCcCCchhhcCCCCccEEEccCCcccccCCcccc
Q 036375          560 QLQGQLPNPLNIAPFADVDFRSNLLEGPIPLPIVEIELLDLSNNHFSGPIPQNISGSMPNLIFLSVSGNRLTGKIPGSIG  639 (1009)
Q Consensus       560 ~l~~~~~~~~~~~~l~~l~l~~n~l~~~~~~~~~~L~~L~Ls~n~l~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~  639 (1009)
                      .+... |.                      ....+|+.|++++|.+++.   ..+..+++|++|++++|.+++..|..+.
T Consensus       216 ~l~~~-~~----------------------~~~~~L~~L~l~~n~l~~~---~~l~~l~~L~~L~Ls~n~l~~~~~~~~~  269 (390)
T 3o6n_A          216 SINVV-RG----------------------PVNVELTILKLQHNNLTDT---AWLLNYPGLVEVDLSYNELEKIMYHPFV  269 (390)
T ss_dssp             CCCEE-EC----------------------CCCSSCCEEECCSSCCCCC---GGGGGCTTCSEEECCSSCCCEEESGGGT
T ss_pred             eeeec-cc----------------------cccccccEEECCCCCCccc---HHHcCCCCccEEECCCCcCCCcChhHcc
Confidence            32211 00                      0013455555555555432   2334455555555555555555555555


Q ss_pred             cCCCCCeEEccCCcCCccCcCcccCCCCCCEEECCCCcCcccCCccccCCCCCCEEEccCccccCCCchhhcCCCCCCEE
Q 036375          640 EMQLLQVIDLSRNSISGSISSSIGNCTFLKVLDLSYSSLSGVIPASLGQLTRLQSLHLNNNKLTGNLPSSFQNLTSLETL  719 (1009)
Q Consensus       640 ~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L  719 (1009)
                      .+++|++|++++|++++ +|..+..+++|++|++++|+++ .+|..+..+++|++|++++|+++.. +  +..+++|++|
T Consensus       270 ~l~~L~~L~L~~n~l~~-~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~l~~L~~L~L~~N~i~~~-~--~~~~~~L~~L  344 (390)
T 3o6n_A          270 KMQRLERLYISNNRLVA-LNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIVTL-K--LSTHHTLKNL  344 (390)
T ss_dssp             TCSSCCEEECCSSCCCE-EECSSSCCTTCCEEECCSSCCC-CCGGGHHHHTTCSEEECCSSCCCCC-C--CCTTCCCSEE
T ss_pred             ccccCCEEECCCCcCcc-cCcccCCCCCCCEEECCCCcce-ecCccccccCcCCEEECCCCcccee-C--chhhccCCEE
Confidence            55555555555555553 2334445555555555555555 2344444555555555555555432 1  3444555555


Q ss_pred             ECcCCcccc
Q 036375          720 DLGNNRFSG  728 (1009)
Q Consensus       720 ~L~~N~l~~  728 (1009)
                      ++++|++.+
T Consensus       345 ~l~~N~~~~  353 (390)
T 3o6n_A          345 TLSHNDWDC  353 (390)
T ss_dssp             ECCSSCEEH
T ss_pred             EcCCCCccc
Confidence            555555543

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=99.97  E-value=4.3e-30  Score=286.92  Aligned_cols=259  Identities=26%  Similarity=0.385  Sum_probs=201.4

Q ss_pred             CCccEEEccCCcCCCcCCchhhcCCCCccEEEccCCcccccCCcccccCCCCCeEEccCCcCCccCcCcccCCCCCCEEE
Q 036375          593 VEIELLDLSNNHFSGPIPQNISGSMPNLIFLSVSGNRLTGKIPGSIGEMQLLQVIDLSRNSISGSISSSIGNCTFLKVLD  672 (1009)
Q Consensus       593 ~~L~~L~Ls~n~l~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~  672 (1009)
                      ++|++|++++|.+++ ++  .+..+++|++|++++|++++..+  +..+++|++|++++|.....++ .+..+++|++|+
T Consensus        88 ~~L~~L~L~~n~i~~-~~--~~~~l~~L~~L~l~~n~i~~~~~--~~~l~~L~~L~l~~n~~~~~~~-~~~~l~~L~~L~  161 (347)
T 4fmz_A           88 VKLTNLYIGTNKITD-IS--ALQNLTNLRELYLNEDNISDISP--LANLTKMYSLNLGANHNLSDLS-PLSNMTGLNYLT  161 (347)
T ss_dssp             TTCCEEECCSSCCCC-CG--GGTTCTTCSEEECTTSCCCCCGG--GTTCTTCCEEECTTCTTCCCCG-GGTTCTTCCEEE
T ss_pred             CcCCEEEccCCcccC-ch--HHcCCCcCCEEECcCCcccCchh--hccCCceeEEECCCCCCccccc-chhhCCCCcEEE
Confidence            456666666666653 33  35677888888888888876543  7788888888888886654444 488888888888


Q ss_pred             CCCCcCcccCCccccCCCCCCEEEccCccccCCCchhhcCCCCCCEEECcCCcccccCchhhhhcCcCCcEEEccCCccc
Q 036375          673 LSYSSLSGVIPASLGQLTRLQSLHLNNNKLTGNLPSSFQNLTSLETLDLGNNRFSGNIPSLLGNGFVGLRILSLRSNAFS  752 (1009)
Q Consensus       673 Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~ip~~l~~~l~~L~~L~L~~N~l~  752 (1009)
                      +++|++.+..+  +..+++|++|++++|.+.+. +. +..+++|+.|++++|.+.+..+  +. .+++|+.|++++|+++
T Consensus       162 l~~~~~~~~~~--~~~l~~L~~L~l~~n~l~~~-~~-~~~l~~L~~L~l~~n~l~~~~~--~~-~~~~L~~L~l~~n~l~  234 (347)
T 4fmz_A          162 VTESKVKDVTP--IANLTDLYSLSLNYNQIEDI-SP-LASLTSLHYFTAYVNQITDITP--VA-NMTRLNSLKIGNNKIT  234 (347)
T ss_dssp             CCSSCCCCCGG--GGGCTTCSEEECTTSCCCCC-GG-GGGCTTCCEEECCSSCCCCCGG--GG-GCTTCCEEECCSSCCC
T ss_pred             ecCCCcCCchh--hccCCCCCEEEccCCccccc-cc-ccCCCccceeecccCCCCCCch--hh-cCCcCCEEEccCCccC
Confidence            88888876544  77888889999988888754 33 7888889999999988874433  33 4888999999999888


Q ss_pred             ccCCcccCCCCCCCEEEccCCcCCCCCChhhhhhhhhhhccchhhhhhccccccceeeceEEEeecCCCCCCCCceeEEE
Q 036375          753 GEIPSKLSNLSSLQVLDLAENNLTGSIPGSVGDLKAMAHVQNIVKYLLFGRYRGIYYEENLVINTKGSSKDTPRLFHFID  832 (1009)
Q Consensus       753 ~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~  832 (1009)
                      +..+  +..+++|++|++++|++++.  ..+..+++|                                       +.|+
T Consensus       235 ~~~~--~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L---------------------------------------~~L~  271 (347)
T 4fmz_A          235 DLSP--LANLSQLTWLEIGTNQISDI--NAVKDLTKL---------------------------------------KMLN  271 (347)
T ss_dssp             CCGG--GTTCTTCCEEECCSSCCCCC--GGGTTCTTC---------------------------------------CEEE
T ss_pred             CCcc--hhcCCCCCEEECCCCccCCC--hhHhcCCCc---------------------------------------CEEE
Confidence            5443  88889999999999988863  345555544                                       8889


Q ss_pred             ccCCccCCCCCccccCcCCCCeEEccCCcccccCCCCccCCCCCCEEeCCCCcCCCCCcccccCCCCCCeEeCCCCcce
Q 036375          833 LSGNNLHGDFPTQLTKLVGLVVLNLSRNHIGGQIPENISGLHQLASLDLSSNNLSGGIPSSLSSLSFLGYINLSRNQLS  911 (1009)
Q Consensus       833 Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~ls~N~l~  911 (1009)
                      +++|++++.  +.+..+++|+.|++++|++++..|+.++++++|++|++++|++++..|  ++.+++|++||+++|+++
T Consensus       272 l~~n~l~~~--~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~N~i~  346 (347)
T 4fmz_A          272 VGSNQISDI--SVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRP--LASLSKMDSADFANQVIK  346 (347)
T ss_dssp             CCSSCCCCC--GGGGGCTTCSEEECCSSCCCGGGHHHHHTCTTCSEEECCSSSCCCCGG--GGGCTTCSEESSSCC---
T ss_pred             ccCCccCCC--hhhcCCCCCCEEECcCCcCCCcChhHhhccccCCEEEccCCccccccC--hhhhhccceeehhhhccc
Confidence            999998875  458889999999999999999888889999999999999999998766  888999999999999875

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=99.97  E-value=4.9e-30  Score=283.97  Aligned_cols=269  Identities=21%  Similarity=0.287  Sum_probs=196.4

Q ss_pred             CCccEEEccCCcCCCcCCchhhcCCCCccEEEccCCcccccCCcccccCCCCCeEEccCCcCCccCcCcccCCCCCCEEE
Q 036375          593 VEIELLDLSNNHFSGPIPQNISGSMPNLIFLSVSGNRLTGKIPGSIGEMQLLQVIDLSRNSISGSISSSIGNCTFLKVLD  672 (1009)
Q Consensus       593 ~~L~~L~Ls~n~l~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~  672 (1009)
                      +.++.|++++|.++ .++...+..+++|++|++++|++++..|..|+++++|++|++++|+++ .+|..+.  ++|++|+
T Consensus        52 ~~l~~L~L~~n~i~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~--~~L~~L~  127 (330)
T 1xku_A           52 PDTALLDLQNNKIT-EIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLK-ELPEKMP--KTLQELR  127 (330)
T ss_dssp             TTCCEEECCSSCCC-CBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCS-BCCSSCC--TTCCEEE
T ss_pred             CCCeEEECCCCcCC-EeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECCCCcCC-ccChhhc--ccccEEE
Confidence            46777788888777 344445567788888888888888777777888888888888888777 3444443  6788888


Q ss_pred             CCCCcCcccCCccccCCCCCCEEEccCccccC--CCchhhcCCCCCCEEECcCCcccccCchhhhhcCcCCcEEEccCCc
Q 036375          673 LSYSSLSGVIPASLGQLTRLQSLHLNNNKLTG--NLPSSFQNLTSLETLDLGNNRFSGNIPSLLGNGFVGLRILSLRSNA  750 (1009)
Q Consensus       673 Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~--~~p~~~~~l~~L~~L~L~~N~l~~~ip~~l~~~l~~L~~L~L~~N~  750 (1009)
                      +++|++++..+..|..+++|++|++++|.++.  ..+..+..+++|++|++++|.++ .+|..+   .++|+.|++++|+
T Consensus       128 l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~-~l~~~~---~~~L~~L~l~~n~  203 (330)
T 1xku_A          128 VHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNIT-TIPQGL---PPSLTELHLDGNK  203 (330)
T ss_dssp             CCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCC-SCCSSC---CTTCSEEECTTSC
T ss_pred             CCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCccc-cCCccc---cccCCEEECCCCc
Confidence            88888877766777778888888888887753  56677777888888888888776 566653   3677888888888


Q ss_pred             ccccCCcccCCCCCCCEEEccCCcCCCCCChhhhhhhhhhhccchhhhhhccccccceeeceEEEeecCCCCCCCCceeE
Q 036375          751 FSGEIPSKLSNLSSLQVLDLAENNLTGSIPGSVGDLKAMAHVQNIVKYLLFGRYRGIYYEENLVINTKGSSKDTPRLFHF  830 (1009)
Q Consensus       751 l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  830 (1009)
                      +++..|..+..+++|+.|++++|++++..|..+..+++|                                       +.
T Consensus       204 l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L---------------------------------------~~  244 (330)
T 1xku_A          204 ITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHL---------------------------------------RE  244 (330)
T ss_dssp             CCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTC---------------------------------------CE
T ss_pred             CCccCHHHhcCCCCCCEEECCCCcCceeChhhccCCCCC---------------------------------------CE
Confidence            877777777778888888888888877766667666665                                       77


Q ss_pred             EEccCCccCCCCCccccCcCCCCeEEccCCcccccCCCCccCC------CCCCEEeCCCCcCCC--CCcccccCCCCCCe
Q 036375          831 IDLSGNNLHGDFPTQLTKLVGLVVLNLSRNHIGGQIPENISGL------HQLASLDLSSNNLSG--GIPSSLSSLSFLGY  902 (1009)
Q Consensus       831 L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l------~~L~~L~Ls~N~l~~--~ip~~l~~l~~L~~  902 (1009)
                      |+|++|+++ .+|..+..+++|++|++++|++++..+..|...      ..|+.|++++|.+..  ..|..|..+..++.
T Consensus       245 L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~~~~~~i~~~~f~~~~~l~~  323 (330)
T 1xku_A          245 LHLNNNKLV-KVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAA  323 (330)
T ss_dssp             EECCSSCCS-SCCTTTTTCSSCCEEECCSSCCCCCCTTSSSCSSCCTTSCCCSEEECCSSSSCGGGSCGGGGTTCCCGGG
T ss_pred             EECCCCcCc-cCChhhccCCCcCEEECCCCcCCccChhhcCCcccccccccccceEeecCcccccccCccccccccceeE
Confidence            788888777 667777777888888888888877766666433      667778888887753  55677777777888


Q ss_pred             EeCCCCc
Q 036375          903 INLSRNQ  909 (1009)
Q Consensus       903 L~ls~N~  909 (1009)
                      +++++|+
T Consensus       324 l~L~~N~  330 (330)
T 1xku_A          324 VQLGNYK  330 (330)
T ss_dssp             EEC----
T ss_pred             EEecccC
Confidence            8887774

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=99.97  E-value=4.7e-30  Score=284.23  Aligned_cols=268  Identities=22%  Similarity=0.275  Sum_probs=223.9

Q ss_pred             CCccEEEccCCcCCCcCCchhhcCCCCccEEEccCCcccccCCcccccCCCCCeEEccCCcCCccCcCcccCCCCCCEEE
Q 036375          593 VEIELLDLSNNHFSGPIPQNISGSMPNLIFLSVSGNRLTGKIPGSIGEMQLLQVIDLSRNSISGSISSSIGNCTFLKVLD  672 (1009)
Q Consensus       593 ~~L~~L~Ls~n~l~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~  672 (1009)
                      ++++.|++++|.+. .++...+..+++|++|++++|++++..|.+|+++++|++|++++|+++ .+|..+.  ++|++|+
T Consensus        54 ~~l~~L~l~~n~i~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~l~~~~~--~~L~~L~  129 (332)
T 2ft3_A           54 PDTTLLDLQNNDIS-ELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNHLV-EIPPNLP--SSLVELR  129 (332)
T ss_dssp             TTCCEEECCSSCCC-EECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECCSSCCC-SCCSSCC--TTCCEEE
T ss_pred             CCCeEEECCCCcCC-ccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECCCCcCC-ccCcccc--ccCCEEE
Confidence            57888999999887 444455678899999999999999888888999999999999999988 4454444  7899999


Q ss_pred             CCCCcCcccCCccccCCCCCCEEEccCcccc--CCCchhhcCCCCCCEEECcCCcccccCchhhhhcCcCCcEEEccCCc
Q 036375          673 LSYSSLSGVIPASLGQLTRLQSLHLNNNKLT--GNLPSSFQNLTSLETLDLGNNRFSGNIPSLLGNGFVGLRILSLRSNA  750 (1009)
Q Consensus       673 Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~--~~~p~~~~~l~~L~~L~L~~N~l~~~ip~~l~~~l~~L~~L~L~~N~  750 (1009)
                      +++|++++..+..|..+++|++|++++|.++  +..|..+..+ +|++|++++|.++ .+|..+   .++|+.|++++|.
T Consensus       130 l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~n~l~-~l~~~~---~~~L~~L~l~~n~  204 (332)
T 2ft3_A          130 IHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEAKLT-GIPKDL---PETLNELHLDHNK  204 (332)
T ss_dssp             CCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCCSSBCS-SCCSSS---CSSCSCCBCCSSC
T ss_pred             CCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCC-ccCEEECcCCCCC-ccCccc---cCCCCEEECCCCc
Confidence            9999999777777889999999999999986  4677778877 8999999999988 577764   4789999999999


Q ss_pred             ccccCCcccCCCCCCCEEEccCCcCCCCCChhhhhhhhhhhccchhhhhhccccccceeeceEEEeecCCCCCCCCceeE
Q 036375          751 FSGEIPSKLSNLSSLQVLDLAENNLTGSIPGSVGDLKAMAHVQNIVKYLLFGRYRGIYYEENLVINTKGSSKDTPRLFHF  830 (1009)
Q Consensus       751 l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  830 (1009)
                      +++..+..+..+++|++|++++|++++..|..+..+++|                                       +.
T Consensus       205 i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L---------------------------------------~~  245 (332)
T 2ft3_A          205 IQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTL---------------------------------------RE  245 (332)
T ss_dssp             CCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGGCTTC---------------------------------------CE
T ss_pred             CCccCHHHhcCCCCCCEEECCCCcCCcCChhHhhCCCCC---------------------------------------CE
Confidence            988877889999999999999999998888788877776                                       88


Q ss_pred             EEccCCccCCCCCccccCcCCCCeEEccCCcccccCCCCccCC------CCCCEEeCCCCcCC--CCCcccccCCCCCCe
Q 036375          831 IDLSGNNLHGDFPTQLTKLVGLVVLNLSRNHIGGQIPENISGL------HQLASLDLSSNNLS--GGIPSSLSSLSFLGY  902 (1009)
Q Consensus       831 L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l------~~L~~L~Ls~N~l~--~~ip~~l~~l~~L~~  902 (1009)
                      |+|++|+++ .+|..+..+++|+.|++++|++++..+..|...      .+|+.|++++|.+.  +..|..|..++.|+.
T Consensus       246 L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~~~~~~~~~~~~~~l~~L~~  324 (332)
T 2ft3_A          246 LHLDNNKLS-RVPAGLPDLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRLA  324 (332)
T ss_dssp             EECCSSCCC-BCCTTGGGCTTCCEEECCSSCCCBCCTTSSSCSSCCSSSCCBSEEECCSSSSCGGGSCGGGGTTBCCSTT
T ss_pred             EECCCCcCe-ecChhhhcCccCCEEECCCCCCCccChhHccccccccccccccceEeecCcccccccCcccccccchhhh
Confidence            899999998 788889999999999999999998887777654      67889999999887  678888999999999


Q ss_pred             EeCCCCc
Q 036375          903 INLSRNQ  909 (1009)
Q Consensus       903 L~ls~N~  909 (1009)
                      +++++|+
T Consensus       325 l~l~~n~  331 (332)
T 2ft3_A          325 IQFGNYK  331 (332)
T ss_dssp             EEC----
T ss_pred             hhccccc
Confidence            9998884

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.97  E-value=1.2e-29  Score=303.92  Aligned_cols=311  Identities=22%  Similarity=0.246  Sum_probs=180.8

Q ss_pred             CCCCCEEEccCCcccccCchhhhcccCCCEEEcCCCcCCCCCCccccccccccCCCCCCCCCcEEECcCCcCcccCChhh
Q 036375          320 MTSLTNFDLFDKKVEGGIPSSIARLCYLKEFDLSGNNLTGSLPEILQGTDLCVSSNSPLPSLISMRLGNNHLKGKLPEWL  399 (1009)
Q Consensus       320 l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l  399 (1009)
                      +++++.+++++|.+....+..+..+++|++|++++|.+.+..|..+.          .+++|++|++++|.+++..|..|
T Consensus        50 l~~l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~----------~l~~L~~L~L~~n~l~~~~~~~~  119 (597)
T 3oja_B           50 LNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFA----------YAHTIQKLYMGFNAIRYLPPHVF  119 (597)
T ss_dssp             GCCCSEEEESSCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTT----------TCTTCCEEECCSSCCCCCCTTTT
T ss_pred             CCCceEEEeeCCCCCCcCHHHHccCCCCcEEECCCCCCCCCChHHhc----------CCCCCCEEECCCCcCCCCCHHHH
Confidence            45666666666666655455556666666666666666655544444          45666666666666665555566


Q ss_pred             cCCCCCCEEeCcCCcccccCCCCCCCCCCCcEEeCCCCcCCCCCCcccCCCCCCCEEEccCcccccccchhhhccCCCCc
Q 036375          400 SQLENLVELTLSYNLLQGPIPASLGNLKNLTKLNLPGNQLNGTLPETLGSLPELSVLDVSSNSLTGIISEIHFSRLSKLK  479 (1009)
Q Consensus       400 ~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~  479 (1009)
                      +.+++|++|+|++|.+++..+..|.++++|++|++++|.+++..|..+..+++|++|++++|.+++.    .+..+++|+
T Consensus       120 ~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~----~~~~l~~L~  195 (597)
T 3oja_B          120 QNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHV----DLSLIPSLF  195 (597)
T ss_dssp             TTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBC----CGGGCTTCS
T ss_pred             cCCCCCCEEEeeCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCc----Chhhhhhhh
Confidence            6666666666666666655445556666666666666666666665666666666666666666542    123344444


Q ss_pred             EEeCCCCcccccCCCCCCCCccccEEecccCcCCCCCCcccccCCCccEEEccCCcccCCCCchhhhccCcccEEEeccc
Q 036375          480 FLGLSSNSFILNVSSSWIPPFQVQSLNMRSCQLGPSFPSWLKTQQGVSFLDFSNASISGPIPNWFWDISSKLSLLNVSLN  559 (1009)
Q Consensus       480 ~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~ls~n~i~~~~p~~~~~~~~~L~~L~ls~n  559 (1009)
                      .|++++|.+                                                ++.      ..            
T Consensus       196 ~L~l~~n~l------------------------------------------------~~l------~~------------  209 (597)
T 3oja_B          196 HANVSYNLL------------------------------------------------STL------AI------------  209 (597)
T ss_dssp             EEECCSSCC------------------------------------------------SEE------EC------------
T ss_pred             hhhcccCcc------------------------------------------------ccc------cC------------
Confidence            444444322                                                100      00            


Q ss_pred             cccccCCCCCCCCCcCeEeccCCCCCCCCCCCCCCccEEEccCCcCCCcCCchhhcCCCCccEEEccCCcccccCCcccc
Q 036375          560 QLQGQLPNPLNIAPFADVDFRSNLLEGPIPLPIVEIELLDLSNNHFSGPIPQNISGSMPNLIFLSVSGNRLTGKIPGSIG  639 (1009)
Q Consensus       560 ~l~~~~~~~~~~~~l~~l~l~~n~l~~~~~~~~~~L~~L~Ls~n~l~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~  639 (1009)
                                                      ..+|+.|++++|.+. .++..   ..                      
T Consensus       210 --------------------------------~~~L~~L~ls~n~l~-~~~~~---~~----------------------  231 (597)
T 3oja_B          210 --------------------------------PIAVEELDASHNSIN-VVRGP---VN----------------------  231 (597)
T ss_dssp             --------------------------------CTTCSEEECCSSCCC-EEECS---CC----------------------
T ss_pred             --------------------------------CchhheeeccCCccc-ccccc---cC----------------------
Confidence                                            012334444444333 11111   11                      


Q ss_pred             cCCCCCeEEccCCcCCccCcCcccCCCCCCEEECCCCcCcccCCccccCCCCCCEEEccCccccCCCchhhcCCCCCCEE
Q 036375          640 EMQLLQVIDLSRNSISGSISSSIGNCTFLKVLDLSYSSLSGVIPASLGQLTRLQSLHLNNNKLTGNLPSSFQNLTSLETL  719 (1009)
Q Consensus       640 ~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L  719 (1009)
                        ++|+.|++++|.+++.  ..+..+++|+.|++++|.+++..|..|+.+++|+.|+|++|.+++ +|..+..+++|+.|
T Consensus       232 --~~L~~L~L~~n~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~-l~~~~~~l~~L~~L  306 (597)
T 3oja_B          232 --VELTILKLQHNNLTDT--AWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVA-LNLYGQPIPTLKVL  306 (597)
T ss_dssp             --SCCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECTTSCCCE-EECSSSCCTTCCEE
T ss_pred             --CCCCEEECCCCCCCCC--hhhccCCCCCEEECCCCccCCCCHHHhcCccCCCEEECCCCCCCC-CCcccccCCCCcEE
Confidence              3455555555555542  345556666666666666666666666666666666666666664 35555566677777


Q ss_pred             ECcCCcccccCchhhhhcCcCCcEEEccCCcccccCCcccCCCCCCCEEEccCCcCCCC
Q 036375          720 DLGNNRFSGNIPSLLGNGFVGLRILSLRSNAFSGEIPSKLSNLSSLQVLDLAENNLTGS  778 (1009)
Q Consensus       720 ~L~~N~l~~~ip~~l~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~  778 (1009)
                      +|++|.++ .+|..+. .+++|+.|++++|.+++. |  +..+++|+.|++++|++++.
T Consensus       307 ~Ls~N~l~-~i~~~~~-~l~~L~~L~L~~N~l~~~-~--~~~~~~L~~L~l~~N~~~~~  360 (597)
T 3oja_B          307 DLSHNHLL-HVERNQP-QFDRLENLYLDHNSIVTL-K--LSTHHTLKNLTLSHNDWDCN  360 (597)
T ss_dssp             ECCSSCCC-CCGGGHH-HHTTCSEEECCSSCCCCC-C--CCTTCCCSEEECCSSCEEHH
T ss_pred             ECCCCCCC-ccCcccc-cCCCCCEEECCCCCCCCc-C--hhhcCCCCEEEeeCCCCCCh
Confidence            77777766 5666655 367777777777777643 2  56677788888888887643

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=99.97  E-value=1.6e-31  Score=294.30  Aligned_cols=282  Identities=17%  Similarity=0.188  Sum_probs=162.4

Q ss_pred             CCCCCCCCCHHHHHHHHHhhhcCC-CCCCCccCCC-----CCCCCCccceeecCCCCcEEEEecCCCCCCCCCCCCCCcC
Q 036375           25 GASRFSNCSENDLDALIDFKNGLE-DPESRLASWK-----GSNCCQWHGISCDDDTGAIVAINLGNPYHVVNSDSSGSLL   98 (1009)
Q Consensus        25 ~~~~~~~~~~~~~~~ll~~k~~~~-~~~~~~~~W~-----~~~~c~w~gv~c~~~~~~v~~l~l~~~~gi~~~l~~l~~L   98 (1009)
                      ..++...+..+|++||++||+++. ||.+...+|.     ..++|.|.||.|+.....+.             -....++
T Consensus        17 ~~~~~~~~~~~~~~aLl~~k~~~~~~~~~~~~~w~~~~~~~~~~~~~~g~~~~~~~~~l~-------------~~~~~~l   83 (328)
T 4fcg_A           17 LYFQGSTALRPYHDVLSQWQRHYNADRNRWHSAWRQANSNNPQIETRTGRALKATADLLE-------------DATQPGR   83 (328)
T ss_dssp             CCCC--CCCCCHHHHHHHHHHHHHHCCTTHHHHHHHHTTTCTTSCCSHHHHHHHHHHHHH-------------HHTSTTC
T ss_pred             eeeeccccCchHHHHHHHHHHhccCCchhhhhhhcccccccccccccCCcchhhhHHHHh-------------cccccce
Confidence            344445677899999999999885 7777778893     46799999999963110000             0112344


Q ss_pred             CEEeCCCCCCCCCCCCcccCCCCCCceeecccCCCCccCCCCCCCCCCCCeeeCCCccccccCCCcccccCCCCCCeEEc
Q 036375           99 EYLDLSFNTFNDIPIPEFLGSLENLQYLNLSEAGFTGVVPSSLGNLHRLQYFDVSAELFALSADSLDWLTGLVSLKHLAM  178 (1009)
Q Consensus        99 ~~LdLs~~~~~~~~lp~~i~~l~~L~~L~Ls~~~~~~~lp~~l~~L~~L~~L~Ls~~~~~~~~~~~~~l~~l~~L~~L~l  178 (1009)
                      ++|||++|.+..  +|..++.+++|++|+|++|.+. .+|..++++++|++|++++|.+.                    
T Consensus        84 ~~L~L~~n~l~~--lp~~l~~l~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~l~--------------------  140 (328)
T 4fcg_A           84 VALELRSVPLPQ--FPDQAFRLSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLR--------------------  140 (328)
T ss_dssp             CEEEEESSCCSS--CCSCGGGGTTCSEEEEESSCCC-CCCSCGGGGTTCSEEEEESCCCC--------------------
T ss_pred             eEEEccCCCchh--cChhhhhCCCCCEEECCCCCcc-chhHHHhccCCCCEEECCCCccc--------------------
Confidence            555555555553  5555555666666666666655 55555666666666665555321                    


Q ss_pred             CCccCCCCcchhhhhhcCCCCccEEEcCCCcCCCCCCCCC--------CCCCCCCcEEECCCCCCCCCchhhhhcCCCCc
Q 036375          179 NRVDLSLVGSEWLGILKNLPNLTELHLSVCGLTGSITSIT--------PVNLTSPAVLDLSLNHFNSLFPNWLVNISTLV  250 (1009)
Q Consensus       179 ~~~~l~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~--------~~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~  250 (1009)
                            .    ++..+.++++|++|++++|.+.+.+|..+        +..+++|++|++++|.++ .+|..+.++++|+
T Consensus       141 ------~----lp~~l~~l~~L~~L~L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~-~lp~~l~~l~~L~  209 (328)
T 4fcg_A          141 ------A----LPASIASLNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIR-SLPASIANLQNLK  209 (328)
T ss_dssp             ------C----CCGGGGGCTTCCEEEEEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCC-CCCGGGGGCTTCC
T ss_pred             ------c----CcHHHhcCcCCCEEECCCCCCccccChhHhhccchhhhccCCCCCEEECcCCCcC-cchHhhcCCCCCC
Confidence                  1    23344455555555555555555554433        123555555555555555 4455566666666


Q ss_pred             EEEccCCcCcccCCcccCCCCCCCEEEcCCCCCCCCcccccccCCCCCccEEEcccccccccCCccccCCCCCCEEEccC
Q 036375          251 YVDLSDCDLYGRIPIGFGELPNLQYLSLAGNNNLSGSCSQLFRGSWKKIQILNFASNKLHGKLPSSVANMTSLTNFDLFD  330 (1009)
Q Consensus       251 ~L~L~~n~~~~~~p~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~  330 (1009)
                      +|++++|.+.+ +|..++.+++|++|++++|+  ..+.++..++.+++|++|++++|.+.+.+|..++++++|++|++++
T Consensus       210 ~L~L~~N~l~~-l~~~l~~l~~L~~L~Ls~n~--~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~  286 (328)
T 4fcg_A          210 SLKIRNSPLSA-LGPAIHHLPKLEELDLRGCT--ALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRG  286 (328)
T ss_dssp             EEEEESSCCCC-CCGGGGGCTTCCEEECTTCT--TCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTT
T ss_pred             EEEccCCCCCc-CchhhccCCCCCEEECcCCc--chhhhHHHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCC
Confidence            66666666653 44456666666666666653  2333444444555555555555555556666666666666666666


Q ss_pred             CcccccCchhhhcccCCCEEEcCCCc
Q 036375          331 KKVEGGIPSSIARLCYLKEFDLSGNN  356 (1009)
Q Consensus       331 n~~~~~~~~~l~~l~~L~~L~l~~n~  356 (1009)
                      |.+.+.+|..++++++|+.+++..+.
T Consensus       287 n~~~~~iP~~l~~L~~L~~l~l~~~~  312 (328)
T 4fcg_A          287 CVNLSRLPSLIAQLPANCIILVPPHL  312 (328)
T ss_dssp             CTTCCCCCGGGGGSCTTCEEECCGGG
T ss_pred             CCchhhccHHHhhccCceEEeCCHHH
Confidence            66666666666666666666655443

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=99.97  E-value=3.7e-29  Score=279.32  Aligned_cols=306  Identities=24%  Similarity=0.347  Sum_probs=180.9

Q ss_pred             CCCCcCCEEeCCCCCCCCCCCCcccCCCCCCceeecccCCCCccCCCCCCCCCCCCeeeCCCccccccCCCcccccCCCC
Q 036375           93 SSGSLLEYLDLSFNTFNDIPIPEFLGSLENLQYLNLSEAGFTGVVPSSLGNLHRLQYFDVSAELFALSADSLDWLTGLVS  172 (1009)
Q Consensus        93 ~~l~~L~~LdLs~~~~~~~~lp~~i~~l~~L~~L~Ls~~~~~~~lp~~l~~L~~L~~L~Ls~~~~~~~~~~~~~l~~l~~  172 (1009)
                      ..+++|++|+++++.+..  +| .+..+++|++|++++|.+.+ +|. +.++++|++|++++|.+..    ++.+.++++
T Consensus        41 ~~l~~L~~L~l~~~~i~~--~~-~~~~~~~L~~L~l~~n~i~~-~~~-~~~l~~L~~L~L~~n~i~~----~~~~~~l~~  111 (347)
T 4fmz_A           41 EELESITKLVVAGEKVAS--IQ-GIEYLTNLEYLNLNGNQITD-ISP-LSNLVKLTNLYIGTNKITD----ISALQNLTN  111 (347)
T ss_dssp             HHHTTCSEEECCSSCCCC--CT-TGGGCTTCCEEECCSSCCCC-CGG-GTTCTTCCEEECCSSCCCC----CGGGTTCTT
T ss_pred             hhcccccEEEEeCCcccc--ch-hhhhcCCccEEEccCCcccc-chh-hhcCCcCCEEEccCCcccC----chHHcCCCc
Confidence            356778888888888876  44 37778888888888888774 333 7888888888888875432    234555556


Q ss_pred             CCeEEcCCccCCCCcchhhhhhcCCCCccEEEcCCCcCCCCCCCCCCCCCCCCcEEECCCCCCCCCchhhhhcCCCCcEE
Q 036375          173 LKHLAMNRVDLSLVGSEWLGILKNLPNLTELHLSVCGLTGSITSITPVNLTSPAVLDLSLNHFNSLFPNWLVNISTLVYV  252 (1009)
Q Consensus       173 L~~L~l~~~~l~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L  252 (1009)
                      |++|+++++.+...    +. +..+++|++|++++|.....++.  +..+++|++|++++|.+.+..+  +..+++|++|
T Consensus       112 L~~L~l~~n~i~~~----~~-~~~l~~L~~L~l~~n~~~~~~~~--~~~l~~L~~L~l~~~~~~~~~~--~~~l~~L~~L  182 (347)
T 4fmz_A          112 LRELYLNEDNISDI----SP-LANLTKMYSLNLGANHNLSDLSP--LSNMTGLNYLTVTESKVKDVTP--IANLTDLYSL  182 (347)
T ss_dssp             CSEEECTTSCCCCC----GG-GTTCTTCCEEECTTCTTCCCCGG--GTTCTTCCEEECCSSCCCCCGG--GGGCTTCSEE
T ss_pred             CCEEECcCCcccCc----hh-hccCCceeEEECCCCCCcccccc--hhhCCCCcEEEecCCCcCCchh--hccCCCCCEE
Confidence            66666666555542    22 55566666666666644433332  2455555555555555554432  4555555555


Q ss_pred             EccCCcCcccCCcccCCCCCCCEEEcCCCCCCCCcccccccCCCCCccEEEcccccccccCCccccCCCCCCEEEccCCc
Q 036375          253 DLSDCDLYGRIPIGFGELPNLQYLSLAGNNNLSGSCSQLFRGSWKKIQILNFASNKLHGKLPSSVANMTSLTNFDLFDKK  332 (1009)
Q Consensus       253 ~L~~n~~~~~~p~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~  332 (1009)
                      ++++|.+.+..+  +..+++|++|++++                          |.+.+..+  +..+++|++|++++|.
T Consensus       183 ~l~~n~l~~~~~--~~~l~~L~~L~l~~--------------------------n~l~~~~~--~~~~~~L~~L~l~~n~  232 (347)
T 4fmz_A          183 SLNYNQIEDISP--LASLTSLHYFTAYV--------------------------NQITDITP--VANMTRLNSLKIGNNK  232 (347)
T ss_dssp             ECTTSCCCCCGG--GGGCTTCCEEECCS--------------------------SCCCCCGG--GGGCTTCCEEECCSSC
T ss_pred             EccCCccccccc--ccCCCccceeeccc--------------------------CCCCCCch--hhcCCcCCEEEccCCc
Confidence            555555443221  44455555555544                          44443222  5555566666666665


Q ss_pred             ccccCchhhhcccCCCEEEcCCCcCCCCCCccccccccccCCCCCCCCCcEEECcCCcCcccCChhhcCCCCCCEEeCcC
Q 036375          333 VEGGIPSSIARLCYLKEFDLSGNNLTGSLPEILQGTDLCVSSNSPLPSLISMRLGNNHLKGKLPEWLSQLENLVELTLSY  412 (1009)
Q Consensus       333 ~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~  412 (1009)
                      +.+..+  +..+++|++|++++|.+++.  ..+.          .+++|++|++++|.+++.  ..+..+++|++|++++
T Consensus       233 l~~~~~--~~~l~~L~~L~l~~n~l~~~--~~~~----------~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~L~~  296 (347)
T 4fmz_A          233 ITDLSP--LANLSQLTWLEIGTNQISDI--NAVK----------DLTKLKMLNVGSNQISDI--SVLNNLSQLNSLFLNN  296 (347)
T ss_dssp             CCCCGG--GTTCTTCCEEECCSSCCCCC--GGGT----------TCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCS
T ss_pred             cCCCcc--hhcCCCCCEEECCCCccCCC--hhHh----------cCCCcCEEEccCCccCCC--hhhcCCCCCCEEECcC
Confidence            553322  55566666666666655542  1222          456666666666666643  3466677777777777


Q ss_pred             CcccccCCCCCCCCCCCcEEeCCCCcCCCCCCcccCCCCCCCEEEccCcccc
Q 036375          413 NLLQGPIPASLGNLKNLTKLNLPGNQLNGTLPETLGSLPELSVLDVSSNSLT  464 (1009)
Q Consensus       413 n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~  464 (1009)
                      |.+++..|..+..+++|++|++++|.+++..|  +..+++|++|++++|.++
T Consensus       297 n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~N~i~  346 (347)
T 4fmz_A          297 NQLGNEDMEVIGGLTNLTTLFLSQNHITDIRP--LASLSKMDSADFANQVIK  346 (347)
T ss_dssp             SCCCGGGHHHHHTCTTCSEEECCSSSCCCCGG--GGGCTTCSEESSSCC---
T ss_pred             CcCCCcChhHhhccccCCEEEccCCccccccC--hhhhhccceeehhhhccc
Confidence            77766666666677777777777777765544  566777777777777654

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=99.97  E-value=7.7e-29  Score=274.37  Aligned_cols=268  Identities=21%  Similarity=0.298  Sum_probs=231.6

Q ss_pred             CCccEEEccCCcCCCcCCchhhcCCCCccEEEccCCcccccCCcccccCCCCCeEEccCCcCCccCcCcccCCCCCCEEE
Q 036375          593 VEIELLDLSNNHFSGPIPQNISGSMPNLIFLSVSGNRLTGKIPGSIGEMQLLQVIDLSRNSISGSISSSIGNCTFLKVLD  672 (1009)
Q Consensus       593 ~~L~~L~Ls~n~l~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~  672 (1009)
                      .+++.++++++.+. .+|..+   .+.+++|++++|++++..+..|.++++|++|++++|++++..|..+.++++|++|+
T Consensus        31 c~l~~l~~~~~~l~-~lp~~~---~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~  106 (330)
T 1xku_A           31 CHLRVVQCSDLGLE-KVPKDL---PPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLY  106 (330)
T ss_dssp             EETTEEECTTSCCC-SCCCSC---CTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEE
T ss_pred             CCCeEEEecCCCcc-ccCccC---CCCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEE
Confidence            47889999999887 677644   46899999999999998888999999999999999999988899999999999999


Q ss_pred             CCCCcCcccCCccccCCCCCCEEEccCccccCCCchhhcCCCCCCEEECcCCcccc--cCchhhhhcCcCCcEEEccCCc
Q 036375          673 LSYSSLSGVIPASLGQLTRLQSLHLNNNKLTGNLPSSFQNLTSLETLDLGNNRFSG--NIPSLLGNGFVGLRILSLRSNA  750 (1009)
Q Consensus       673 Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~--~ip~~l~~~l~~L~~L~L~~N~  750 (1009)
                      +++|+++ .+|..+.  ++|++|++++|++++..+..|..+++|++|++++|.+..  ..+..+. .+++|+.|++++|.
T Consensus       107 Ls~n~l~-~l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~-~l~~L~~L~l~~n~  182 (330)
T 1xku_A          107 LSKNQLK-ELPEKMP--KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQ-GMKKLSYIRIADTN  182 (330)
T ss_dssp             CCSSCCS-BCCSSCC--TTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGG-GCTTCCEEECCSSC
T ss_pred             CCCCcCC-ccChhhc--ccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhcc-CCCCcCEEECCCCc
Confidence            9999998 4555544  789999999999998888889999999999999999863  5555555 59999999999999


Q ss_pred             ccccCCcccCCCCCCCEEEccCCcCCCCCChhhhhhhhhhhccchhhhhhccccccceeeceEEEeecCCCCCCCCceeE
Q 036375          751 FSGEIPSKLSNLSSLQVLDLAENNLTGSIPGSVGDLKAMAHVQNIVKYLLFGRYRGIYYEENLVINTKGSSKDTPRLFHF  830 (1009)
Q Consensus       751 l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  830 (1009)
                      ++ .+|..+.  ++|++|++++|++++..|..+..+++|                                       +.
T Consensus       183 l~-~l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L---------------------------------------~~  220 (330)
T 1xku_A          183 IT-TIPQGLP--PSLTELHLDGNKITKVDAASLKGLNNL---------------------------------------AK  220 (330)
T ss_dssp             CC-SCCSSCC--TTCSEEECTTSCCCEECTGGGTTCTTC---------------------------------------CE
T ss_pred             cc-cCCcccc--ccCCEEECCCCcCCccCHHHhcCCCCC---------------------------------------CE
Confidence            98 4665554  789999999999998888888887776                                       88


Q ss_pred             EEccCCccCCCCCccccCcCCCCeEEccCCcccccCCCCccCCCCCCEEeCCCCcCCCCCcccccCC------CCCCeEe
Q 036375          831 IDLSGNNLHGDFPTQLTKLVGLVVLNLSRNHIGGQIPENISGLHQLASLDLSSNNLSGGIPSSLSSL------SFLGYIN  904 (1009)
Q Consensus       831 L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l------~~L~~L~  904 (1009)
                      |+|++|.+++..+..+..+++|++|+|++|+++ .+|..+..+++|++|++++|++++..+..|...      ..|+.++
T Consensus       221 L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~i~~~~~~~f~~~~~~~~~~~l~~l~  299 (330)
T 1xku_A          221 LGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVS  299 (330)
T ss_dssp             EECCSSCCCEECTTTGGGSTTCCEEECCSSCCS-SCCTTTTTCSSCCEEECCSSCCCCCCTTSSSCSSCCTTSCCCSEEE
T ss_pred             EECCCCcCceeChhhccCCCCCCEEECCCCcCc-cCChhhccCCCcCEEECCCCcCCccChhhcCCcccccccccccceE
Confidence            999999999888888999999999999999998 778889999999999999999998877777543      6788999


Q ss_pred             CCCCcce
Q 036375          905 LSRNQLS  911 (1009)
Q Consensus       905 ls~N~l~  911 (1009)
                      +++|++.
T Consensus       300 l~~N~~~  306 (330)
T 1xku_A          300 LFSNPVQ  306 (330)
T ss_dssp             CCSSSSC
T ss_pred             eecCccc
Confidence            9999875

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=99.96  E-value=8.8e-33  Score=321.84  Aligned_cols=183  Identities=22%  Similarity=0.259  Sum_probs=91.8

Q ss_pred             CccEEEccCCcCCCcCCc---hhhcCCCCccEEEccCCcccccCCccccc-----CCCCCeEEccCCcCCcc----CcCc
Q 036375          594 EIELLDLSNNHFSGPIPQ---NISGSMPNLIFLSVSGNRLTGKIPGSIGE-----MQLLQVIDLSRNSISGS----ISSS  661 (1009)
Q Consensus       594 ~L~~L~Ls~n~l~~~ip~---~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~-----l~~L~~L~Ls~N~l~~~----~p~~  661 (1009)
                      +|++|++++|.+++....   ..+..+++|++|++++|.+++..+..+..     .++|++|++++|.+++.    ++..
T Consensus       143 ~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~  222 (461)
T 1z7x_W          143 RLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGI  222 (461)
T ss_dssp             CCCEEECTTSCCBGGGHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHH
T ss_pred             cceEEECCCCCCCHHHHHHHHHHHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHH
Confidence            455555555555432211   12234566777777776665443333322     34666666666666543    3445


Q ss_pred             ccCCCCCCEEECCCCcCcccC-----CccccCCCCCCEEEccCccccCC----CchhhcCCCCCCEEECcCCcccccCch
Q 036375          662 IGNCTFLKVLDLSYSSLSGVI-----PASLGQLTRLQSLHLNNNKLTGN----LPSSFQNLTSLETLDLGNNRFSGNIPS  732 (1009)
Q Consensus       662 l~~l~~L~~L~Ls~N~l~~~~-----p~~~~~l~~L~~L~L~~N~l~~~----~p~~~~~l~~L~~L~L~~N~l~~~ip~  732 (1009)
                      +..+++|++|++++|++++..     +..+..+++|++|++++|.+++.    ++..+..+++|++|++++|.+.+..+.
T Consensus       223 l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~  302 (461)
T 1z7x_W          223 VASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGAR  302 (461)
T ss_dssp             HHHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHH
T ss_pred             HHhCCCccEEeccCCcCChHHHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCchHHHH
Confidence            555666666666666665432     12222355666666666665532    344455556666666666655543333


Q ss_pred             hhhh----cCcCCcEEEccCCccccc----CCcccCCCCCCCEEEccCCcCC
Q 036375          733 LLGN----GFVGLRILSLRSNAFSGE----IPSKLSNLSSLQVLDLAENNLT  776 (1009)
Q Consensus       733 ~l~~----~l~~L~~L~L~~N~l~~~----~p~~l~~l~~L~~L~Ls~N~l~  776 (1009)
                      .+..    ..++|+.|++++|.+++.    ++..+..+++|++|++++|+++
T Consensus       303 ~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~  354 (461)
T 1z7x_W          303 LLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLE  354 (461)
T ss_dssp             HHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCH
T ss_pred             HHHHHhccCCccceeeEcCCCCCchHHHHHHHHHHhhCCCccEEEccCCccc
Confidence            2221    113455555555554432    2333344444444444444444

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=99.96  E-value=5.1e-32  Score=315.39  Aligned_cols=284  Identities=21%  Similarity=0.184  Sum_probs=182.4

Q ss_pred             ccEEEccCCcCCC----cCCchhhcCCCCccEEEccCCcccccCCccccc-----CCCCCeEEccCCcCCccC----cCc
Q 036375          595 IELLDLSNNHFSG----PIPQNISGSMPNLIFLSVSGNRLTGKIPGSIGE-----MQLLQVIDLSRNSISGSI----SSS  661 (1009)
Q Consensus       595 L~~L~Ls~n~l~~----~ip~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~-----l~~L~~L~Ls~N~l~~~~----p~~  661 (1009)
                      |++|++++|.+++    .++ ..+..+++|++|++++|.+++..+..+..     .++|++|++++|++++..    +..
T Consensus        87 L~~L~L~~n~i~~~~~~~l~-~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~  165 (461)
T 1z7x_W           87 IQKLSLQNCCLTGAGCGVLS-STLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASV  165 (461)
T ss_dssp             CCEEECTTSCCBGGGHHHHH-HHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHH
T ss_pred             eeEEEccCCCCCHHHHHHHH-HHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHHHHH
Confidence            4445555554442    122 23345666777777776665443333322     346777777777776532    445


Q ss_pred             ccCCCCCCEEECCCCcCcccCCcccc-----CCCCCCEEEccCccccCC----CchhhcCCCCCCEEECcCCcccccCc-
Q 036375          662 IGNCTFLKVLDLSYSSLSGVIPASLG-----QLTRLQSLHLNNNKLTGN----LPSSFQNLTSLETLDLGNNRFSGNIP-  731 (1009)
Q Consensus       662 l~~l~~L~~L~Ls~N~l~~~~p~~~~-----~l~~L~~L~L~~N~l~~~----~p~~~~~l~~L~~L~L~~N~l~~~ip-  731 (1009)
                      +..+++|++|++++|++++..+..+.     ..++|++|++++|.+++.    ++..+..+++|++|++++|.+.+... 
T Consensus       166 l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~  245 (461)
T 1z7x_W          166 LRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMA  245 (461)
T ss_dssp             HHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHHHHH
T ss_pred             HhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCChHHHH
Confidence            56667777777777777655443333     245777788877777753    46666777788888888887764322 


Q ss_pred             ---hhhhhcCcCCcEEEccCCccccc----CCcccCCCCCCCEEEccCCcCCCCCChhhhhhhhhhhccchhhhhhcccc
Q 036375          732 ---SLLGNGFVGLRILSLRSNAFSGE----IPSKLSNLSSLQVLDLAENNLTGSIPGSVGDLKAMAHVQNIVKYLLFGRY  804 (1009)
Q Consensus       732 ---~~l~~~l~~L~~L~L~~N~l~~~----~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~~~~~~~~~~~~~~  804 (1009)
                         ..+...+++|+.|++++|.+++.    ++..+..+++|++|++++|++++..+..+...-.                
T Consensus       246 ~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~----------------  309 (461)
T 1z7x_W          246 ELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLL----------------  309 (461)
T ss_dssp             HHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHT----------------
T ss_pred             HHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCchHHHHHHHHHhc----------------
Confidence               22222367788888888877753    5666667788888888888776544433333210                


Q ss_pred             ccceeeceEEEeecCCCCCCCCceeEEEccCCccCCC----CCccccCcCCCCeEEccCCcccccCCCCccC-----CCC
Q 036375          805 RGIYYEENLVINTKGSSKDTPRLFHFIDLSGNNLHGD----FPTQLTKLVGLVVLNLSRNHIGGQIPENISG-----LHQ  875 (1009)
Q Consensus       805 ~~~~~~~~~~~~~~~~~~~~~~~l~~L~Ls~N~l~~~----~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~-----l~~  875 (1009)
                                        .....++.|+|++|.+++.    +|..+..+++|++|+|++|++++..+..+..     .++
T Consensus       310 ------------------~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~  371 (461)
T 1z7x_W          310 ------------------EPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSV  371 (461)
T ss_dssp             ------------------STTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCC
T ss_pred             ------------------cCCccceeeEcCCCCCchHHHHHHHHHHhhCCCccEEEccCCccccccHHHHHHHHcCCCCc
Confidence                              0001337788888888765    4666677788888888888887765554443     568


Q ss_pred             CCEEeCCCCcCCC----CCcccccCCCCCCeEeCCCCcceec
Q 036375          876 LASLDLSSNNLSG----GIPSSLSSLSFLGYINLSRNQLSGK  913 (1009)
Q Consensus       876 L~~L~Ls~N~l~~----~ip~~l~~l~~L~~L~ls~N~l~g~  913 (1009)
                      |++|++++|.+++    .+|..+..+++|++||+++|++++.
T Consensus       372 L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~N~i~~~  413 (461)
T 1z7x_W          372 LRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDA  413 (461)
T ss_dssp             CCEEECTTSCCCHHHHHHHHHHHHHCCCCCEEECCSSSCCHH
T ss_pred             eEEEECCCCCCChhhHHHHHHHHHhCCCccEEECCCCCCCHH
Confidence            8888888888886    6777888888888888888887654

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=99.96  E-value=7.8e-29  Score=274.46  Aligned_cols=267  Identities=21%  Similarity=0.322  Sum_probs=227.1

Q ss_pred             CCccEEEccCCcCCCcCCchhhcCCCCccEEEccCCcccccCCcccccCCCCCeEEccCCcCCccCcCcccCCCCCCEEE
Q 036375          593 VEIELLDLSNNHFSGPIPQNISGSMPNLIFLSVSGNRLTGKIPGSIGEMQLLQVIDLSRNSISGSISSSIGNCTFLKVLD  672 (1009)
Q Consensus       593 ~~L~~L~Ls~n~l~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~  672 (1009)
                      .+++.++++++.+. .+|..+   .+++++|++++|.+++..+..|.++++|++|++++|++++..|..+.++++|++|+
T Consensus        33 c~l~~l~~~~~~l~-~ip~~~---~~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~  108 (332)
T 2ft3_A           33 CHLRVVQCSDLGLK-AVPKEI---SPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLY  108 (332)
T ss_dssp             EETTEEECCSSCCS-SCCSCC---CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEE
T ss_pred             ccCCEEECCCCCcc-ccCCCC---CCCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEE
Confidence            46889999999887 777654   46899999999999988888999999999999999999988899999999999999


Q ss_pred             CCCCcCcccCCccccCCCCCCEEEccCccccCCCchhhcCCCCCCEEECcCCcccc--cCchhhhhcCcCCcEEEccCCc
Q 036375          673 LSYSSLSGVIPASLGQLTRLQSLHLNNNKLTGNLPSSFQNLTSLETLDLGNNRFSG--NIPSLLGNGFVGLRILSLRSNA  750 (1009)
Q Consensus       673 Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~--~ip~~l~~~l~~L~~L~L~~N~  750 (1009)
                      +++|+++ .+|..+.  ++|++|++++|++++..+..|..+++|++|++++|.++.  ..|..+. .+ +|+.|++++|+
T Consensus       109 L~~n~l~-~l~~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~-~l-~L~~L~l~~n~  183 (332)
T 2ft3_A          109 ISKNHLV-EIPPNLP--SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFD-GL-KLNYLRISEAK  183 (332)
T ss_dssp             CCSSCCC-SCCSSCC--TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSC-SC-CCSCCBCCSSB
T ss_pred             CCCCcCC-ccCcccc--ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCccccc-CC-ccCEEECcCCC
Confidence            9999998 4555444  899999999999997777779999999999999999863  4555544 35 89999999999


Q ss_pred             ccccCCcccCCCCCCCEEEccCCcCCCCCChhhhhhhhhhhccchhhhhhccccccceeeceEEEeecCCCCCCCCceeE
Q 036375          751 FSGEIPSKLSNLSSLQVLDLAENNLTGSIPGSVGDLKAMAHVQNIVKYLLFGRYRGIYYEENLVINTKGSSKDTPRLFHF  830 (1009)
Q Consensus       751 l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  830 (1009)
                      +++ +|..+.  ++|++|++++|++++..|..+..+++|                                       +.
T Consensus       184 l~~-l~~~~~--~~L~~L~l~~n~i~~~~~~~l~~l~~L---------------------------------------~~  221 (332)
T 2ft3_A          184 LTG-IPKDLP--ETLNELHLDHNKIQAIELEDLLRYSKL---------------------------------------YR  221 (332)
T ss_dssp             CSS-CCSSSC--SSCSCCBCCSSCCCCCCTTSSTTCTTC---------------------------------------SC
T ss_pred             CCc-cCcccc--CCCCEEECCCCcCCccCHHHhcCCCCC---------------------------------------CE
Confidence            985 666554  789999999999998888888877776                                       77


Q ss_pred             EEccCCccCCCCCccccCcCCCCeEEccCCcccccCCCCccCCCCCCEEeCCCCcCCCCCcccccCC------CCCCeEe
Q 036375          831 IDLSGNNLHGDFPTQLTKLVGLVVLNLSRNHIGGQIPENISGLHQLASLDLSSNNLSGGIPSSLSSL------SFLGYIN  904 (1009)
Q Consensus       831 L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l------~~L~~L~  904 (1009)
                      |+|++|++++..|..+..+++|+.|+|++|+++ .+|..+..+++|++|++++|++++..+..|...      ..|+.++
T Consensus       222 L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~l~~L~  300 (332)
T 2ft3_A          222 LGLGHNQIRMIENGSLSFLPTLRELHLDNNKLS-RVPAGLPDLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGIS  300 (332)
T ss_dssp             CBCCSSCCCCCCTTGGGGCTTCCEEECCSSCCC-BCCTTGGGCTTCCEEECCSSCCCBCCTTSSSCSSCCSSSCCBSEEE
T ss_pred             EECCCCcCCcCChhHhhCCCCCCEEECCCCcCe-ecChhhhcCccCCEEECCCCCCCccChhHccccccccccccccceE
Confidence            899999999888888999999999999999998 678889999999999999999998877777653      5688999


Q ss_pred             CCCCcce
Q 036375          905 LSRNQLS  911 (1009)
Q Consensus       905 ls~N~l~  911 (1009)
                      +++|++.
T Consensus       301 l~~N~~~  307 (332)
T 2ft3_A          301 LFNNPVP  307 (332)
T ss_dssp             CCSSSSC
T ss_pred             eecCccc
Confidence            9999876

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=99.96  E-value=5.7e-29  Score=278.08  Aligned_cols=279  Identities=22%  Similarity=0.232  Sum_probs=233.6

Q ss_pred             CCccEEEccCCcCCCcCCchhhcCCCCccEEEccCCcccccCCcccccCCCCCeEEccCCcCCccCcCcccCCCCCCEEE
Q 036375          593 VEIELLDLSNNHFSGPIPQNISGSMPNLIFLSVSGNRLTGKIPGSIGEMQLLQVIDLSRNSISGSISSSIGNCTFLKVLD  672 (1009)
Q Consensus       593 ~~L~~L~Ls~n~l~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~  672 (1009)
                      +.....+++++.++ .+|..+   .++|++|++++|++++..+..+.++++|++|++++|++++..|..|.++++|++|+
T Consensus        31 ~~~~~c~~~~~~l~-~iP~~~---~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~  106 (353)
T 2z80_A           31 DRNGICKGSSGSLN-SIPSGL---TEAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLD  106 (353)
T ss_dssp             CTTSEEECCSTTCS-SCCTTC---CTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEE
T ss_pred             CCCeEeeCCCCCcc-cccccc---cccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEE
Confidence            34455788888887 778754   35899999999999988888899999999999999999988888999999999999


Q ss_pred             CCCCcCcccCCccccCCCCCCEEEccCccccCCCc-hhhcCCCCCCEEECcCCc-ccccCchhhhhcCcCCcEEEccCCc
Q 036375          673 LSYSSLSGVIPASLGQLTRLQSLHLNNNKLTGNLP-SSFQNLTSLETLDLGNNR-FSGNIPSLLGNGFVGLRILSLRSNA  750 (1009)
Q Consensus       673 Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p-~~~~~l~~L~~L~L~~N~-l~~~ip~~l~~~l~~L~~L~L~~N~  750 (1009)
                      +++|++++..+..|+.+++|++|++++|++++..+ ..+..+++|++|++++|. +.+..|..+. .+++|+.|++++|+
T Consensus       107 Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~-~l~~L~~L~l~~n~  185 (353)
T 2z80_A          107 LSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFA-GLTFLEELEIDASD  185 (353)
T ss_dssp             CCSSCCSSCCHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTT-TCCEEEEEEEEETT
T ss_pred             CCCCcCCcCCHhHhCCCccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCccccccCHHHcc-CCCCCCEEECCCCC
Confidence            99999997666668999999999999999995444 478999999999999995 5533344454 59999999999999


Q ss_pred             ccccCCcccCCCCCCCEEEccCCcCCCCCChhhhhhhhhhhccchhhhhhccccccceeeceEEEeecCCCCCCCCceeE
Q 036375          751 FSGEIPSKLSNLSSLQVLDLAENNLTGSIPGSVGDLKAMAHVQNIVKYLLFGRYRGIYYEENLVINTKGSSKDTPRLFHF  830 (1009)
Q Consensus       751 l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  830 (1009)
                      +++..|..+..+++|++|++++|+++...+..+..+++|                                       +.
T Consensus       186 l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L---------------------------------------~~  226 (353)
T 2z80_A          186 LQSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSV---------------------------------------EC  226 (353)
T ss_dssp             CCEECTTTTTTCSEEEEEEEECSCSTTHHHHHHHHTTTE---------------------------------------EE
T ss_pred             cCccCHHHHhccccCCeecCCCCccccchhhhhhhcccc---------------------------------------cE
Confidence            999889999999999999999999864333334445555                                       89


Q ss_pred             EEccCCccCCCCCcccc---CcCCCCeEEccCCcccc----cCCCCccCCCCCCEEeCCCCcCCCCCccc-ccCCCCCCe
Q 036375          831 IDLSGNNLHGDFPTQLT---KLVGLVVLNLSRNHIGG----QIPENISGLHQLASLDLSSNNLSGGIPSS-LSSLSFLGY  902 (1009)
Q Consensus       831 L~Ls~N~l~~~~p~~l~---~l~~L~~L~Ls~N~l~~----~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~-l~~l~~L~~  902 (1009)
                      |+|++|.+++..+..+.   ....++.++|++|.+++    .+|+.+.++++|++||+++|+++. +|.. |+.+++|++
T Consensus       227 L~L~~n~l~~~~~~~l~~~~~~~~l~~l~L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N~l~~-i~~~~~~~l~~L~~  305 (353)
T 2z80_A          227 LELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRNQLKS-VPDGIFDRLTSLQK  305 (353)
T ss_dssp             EEEESCBCTTCCCC------CCCCCCEEEEESCBCCHHHHHHHHHHHHTCTTCCEEECCSSCCCC-CCTTTTTTCTTCCE
T ss_pred             EECCCCccccccccccccccccchhhccccccccccCcchhhhHHHHhcccCCCEEECCCCCCCc-cCHHHHhcCCCCCE
Confidence            99999999987766544   46778899999999987    478889999999999999999995 5555 699999999


Q ss_pred             EeCCCCcceecCCC
Q 036375          903 INLSRNQLSGKIPF  916 (1009)
Q Consensus       903 L~ls~N~l~g~ip~  916 (1009)
                      |++++|++++.+|.
T Consensus       306 L~L~~N~~~~~~~~  319 (353)
T 2z80_A          306 IWLHTNPWDCSCPR  319 (353)
T ss_dssp             EECCSSCBCCCHHH
T ss_pred             EEeeCCCccCcCCC
Confidence            99999999998773

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=99.95  E-value=4.8e-31  Score=317.63  Aligned_cols=452  Identities=13%  Similarity=0.060  Sum_probs=239.3

Q ss_pred             CCCccceeecCCCCcEEEEecCCCCC--CCCCCCCCCcCCEEeCCCCCCC---CCCCCcccC------------CCCCCc
Q 036375           62 CCQWHGISCDDDTGAIVAINLGNPYH--VVNSDSSGSLLEYLDLSFNTFN---DIPIPEFLG------------SLENLQ  124 (1009)
Q Consensus        62 ~c~w~gv~c~~~~~~v~~l~l~~~~g--i~~~l~~l~~L~~LdLs~~~~~---~~~lp~~i~------------~l~~L~  124 (1009)
                      |++|.++.+...  +.  +.+...+.  .+..+.++++|++|+|+++...   + .+|..++            .+++|+
T Consensus        41 ck~W~~~~~~~~--~~--l~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~-~~~~~~~~~~~~~l~~l~~~~~~L~  115 (592)
T 3ogk_B           41 CRRWFKIDSETR--EH--VTMALCYTATPDRLSRRFPNLRSLKLKGKPRAAMFN-LIPENWGGYVTPWVTEISNNLRQLK  115 (592)
T ss_dssp             CHHHHHHHHHHC--CE--EEESCGGGSCHHHHHHHCTTCSEEEEECSCGGGGGT-CSCTTSCCBCHHHHHHHHHHCTTCC
T ss_pred             hHHHHHhhhccc--cE--EEEeeccccChHHHHHhCCCCeEEEecCCcchhhcc-cccccccccchHHHHHHHhhCCCCC
Confidence            558998865322  22  22333222  2234457788999999875421   1 1232222            678888


Q ss_pred             eeecccCCCCccCCCCCCCC--CCCCeeeCCCccccccCCCcccc-cCCCCCCeEEcCCccCCCCcch-hhhhhcCCCCc
Q 036375          125 YLNLSEAGFTGVVPSSLGNL--HRLQYFDVSAELFALSADSLDWL-TGLVSLKHLAMNRVDLSLVGSE-WLGILKNLPNL  200 (1009)
Q Consensus       125 ~L~Ls~~~~~~~lp~~l~~L--~~L~~L~Ls~~~~~~~~~~~~~l-~~l~~L~~L~l~~~~l~~~~~~-~~~~l~~l~~L  200 (1009)
                      +|+|++|.+.+..+..+++.  .+|++|++++|.. .....+..+ .++++|++|+++++.+++.+.. +......+++|
T Consensus       116 ~L~L~~~~i~~~~~~~l~~~~~~~L~~L~L~~~~~-~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L  194 (592)
T 3ogk_B          116 SVHFRRMIVSDLDLDRLAKARADDLETLKLDKCSG-FTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQHNTSL  194 (592)
T ss_dssp             EEEEESCBCCHHHHHHHHHHHGGGCCEEEEESCEE-EEHHHHHHHHHHCTTCSEEECTTCEEECCCSHHHHHHHHHCCCC
T ss_pred             eEEeeccEecHHHHHHHHHhccccCcEEECcCCCC-cCHHHHHHHHhhCCCCCEEECccccccCcchhHHHHHHhcCCCc
Confidence            88888887776655556553  3488888887741 111122222 2467777777777766554333 23344567777


Q ss_pred             cEEEcCCCcCCCC----CCCCCCCCCCCCcEEECCCCCCCCCchhhhhcCCCCcEEEccCCcCc---ccCCcccCCCCCC
Q 036375          201 TELHLSVCGLTGS----ITSITPVNLTSPAVLDLSLNHFNSLFPNWLVNISTLVYVDLSDCDLY---GRIPIGFGELPNL  273 (1009)
Q Consensus       201 ~~L~L~~n~l~~~----~~~~~~~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~L~~n~~~---~~~p~~l~~l~~L  273 (1009)
                      ++|++++|.+.+.    ++. ...++++|++|++++|.+.+ +|..+..+++|++|+++.+...   +..+..+..+++|
T Consensus       195 ~~L~L~~n~~~~~~~~~l~~-~~~~~~~L~~L~L~~~~~~~-l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L  272 (592)
T 3ogk_B          195 EVLNFYMTEFAKISPKDLET-IARNCRSLVSVKVGDFEILE-LVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKL  272 (592)
T ss_dssp             CEEECTTCCCSSCCHHHHHH-HHHHCTTCCEEECSSCBGGG-GHHHHHHCTTCCEEEECBCCCCTTCTTSSSCCCCCTTC
T ss_pred             cEEEeeccCCCccCHHHHHH-HHhhCCCCcEEeccCccHHH-HHHHHhhhhHHHhhcccccccccchHHHHHHhhccccc
Confidence            7777777766521    111 12456677777777766665 4566667777777777653322   2333455666667


Q ss_pred             CEEEcCCCCCCCCcccccccCCCCCccEEEcccccccccCC-ccccCCCCCCEEEccCCcccccCchhhhcccCCCEEEc
Q 036375          274 QYLSLAGNNNLSGSCSQLFRGSWKKIQILNFASNKLHGKLP-SSVANMTSLTNFDLFDKKVEGGIPSSIARLCYLKEFDL  352 (1009)
Q Consensus       274 ~~L~L~~n~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p-~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l  352 (1009)
                      +.|+++++   ....++..+..+++|++|++++|.+.+... ..+..+++|++|+++++...+.++.....+++|++|++
T Consensus       273 ~~L~l~~~---~~~~l~~~~~~~~~L~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~L  349 (592)
T 3ogk_B          273 CRLGLSYM---GPNEMPILFPFAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETRNVIGDRGLEVLAQYCKQLKRLRI  349 (592)
T ss_dssp             CEEEETTC---CTTTGGGGGGGGGGCCEEEETTCCCCHHHHHHHHTTCTTCCEEEEEGGGHHHHHHHHHHHCTTCCEEEE
T ss_pred             cccCcccc---chhHHHHHHhhcCCCcEEecCCCcCCHHHHHHHHHhCcCCCEEeccCccCHHHHHHHHHhCCCCCEEEe
Confidence            77766653   234455555666677777777666544322 23456666777766633222233333455666666666


Q ss_pred             CC-----------CcCCCCCCcc-ccccccccCCCCCCCCCcEEECcCCcCcccCChhhcC-CCCCCEEeCc----CCcc
Q 036375          353 SG-----------NNLTGSLPEI-LQGTDLCVSSNSPLPSLISMRLGNNHLKGKLPEWLSQ-LENLVELTLS----YNLL  415 (1009)
Q Consensus       353 ~~-----------n~l~~~~~~~-~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~-l~~L~~L~Ls----~n~l  415 (1009)
                      ++           +.+++..... ..          .+++|++|+++.+.+++..+..+.. +++|++|+++    .|.+
T Consensus       350 ~~g~~~~~~~~~~~~~~~~~~~~l~~----------~~~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l  419 (592)
T 3ogk_B          350 ERGADEQGMEDEEGLVSQRGLIALAQ----------GCQELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERI  419 (592)
T ss_dssp             ECCCCSSTTSSTTCCCCHHHHHHHHH----------HCTTCSEEEEEESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCC
T ss_pred             ecCccccccccccCccCHHHHHHHHh----------hCccCeEEEeecCCccHHHHHHHHhhCCCCcEEEEeecCCCccc
Confidence            62           2333221111 11          3556666666555555544444443 5566666664    3344


Q ss_pred             ccc-----CCCCCCCCCCCcEEeCCCCc--CCCCCCcccC-CCCCCCEEEccCcccccccchhhhccCCCCcEEeCCCCc
Q 036375          416 QGP-----IPASLGNLKNLTKLNLPGNQ--LNGTLPETLG-SLPELSVLDVSSNSLTGIISEIHFSRLSKLKFLGLSSNS  487 (1009)
Q Consensus       416 ~~~-----~p~~l~~l~~L~~L~L~~n~--l~~~~p~~l~-~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~  487 (1009)
                      ++.     ++..+.++++|++|+++.|.  +++..+..+. .+++|++|++++|.+++......+..+++|++|++++|+
T Consensus       420 ~~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~  499 (592)
T 3ogk_B          420 TDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCC  499 (592)
T ss_dssp             SSCCCHHHHHHHHHHCTTCCEEEEECCGGGCCHHHHHHHHHSCTTCCEEEECSCCSSHHHHHHHHTCCTTCCEEEEESCC
T ss_pred             cCchHHHHHHHHHHhCCCCCEEEEecCCCCccHHHHHHHHHhCccceEeeccCCCCCHHHHHHHHhcCcccCeeeccCCC
Confidence            431     11123345555565554432  3322222222 245555555555555442222233445555555555554


Q ss_pred             ccccCCCCCCCCccccEEecccCcCCCC-CCcccccCCCccEEEccCCcccCCCCchhhhccCcccEEEecc
Q 036375          488 FILNVSSSWIPPFQVQSLNMRSCQLGPS-FPSWLKTQQGVSFLDFSNASISGPIPNWFWDISSKLSLLNVSL  558 (1009)
Q Consensus       488 l~~~~~~~~~~~~~L~~L~l~~~~~~~~-~~~~l~~~~~L~~L~ls~n~i~~~~p~~~~~~~~~L~~L~ls~  558 (1009)
                      +                        +.. .+.....+++|++|++++|++++.....+...++.+....+..
T Consensus       500 l------------------------~~~~~~~~~~~l~~L~~L~ls~n~it~~~~~~l~~~~p~l~~~~~~~  547 (592)
T 3ogk_B          500 F------------------------SERAIAAAVTKLPSLRYLWVQGYRASMTGQDLMQMARPYWNIELIPS  547 (592)
T ss_dssp             C------------------------BHHHHHHHHHHCSSCCEEEEESCBCCTTCTTGGGGCCTTEEEEEECC
T ss_pred             C------------------------cHHHHHHHHHhcCccCeeECcCCcCCHHHHHHHHHhCCCcEEEEecC
Confidence            3                        211 2233345666777777777766554444444455555544443

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=99.95  E-value=4e-28  Score=265.58  Aligned_cols=249  Identities=25%  Similarity=0.339  Sum_probs=136.1

Q ss_pred             cEEEccCCcCCCcCCchhhcCCCCccEEEccCCcccccCCcccccCCCCCeEEccCCcCCcc--CcCcccCCCCCCEEEC
Q 036375          596 ELLDLSNNHFSGPIPQNISGSMPNLIFLSVSGNRLTGKIPGSIGEMQLLQVIDLSRNSISGS--ISSSIGNCTFLKVLDL  673 (1009)
Q Consensus       596 ~~L~Ls~n~l~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~--~p~~l~~l~~L~~L~L  673 (1009)
                      +.++++++.++ .+|..+   .+++++|++++|+++...+..|.++++|++|++++|+++..  .+..+..+++|++|++
T Consensus        10 ~~l~c~~~~l~-~ip~~~---~~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L   85 (306)
T 2z66_A           10 TEIRCNSKGLT-SVPTGI---PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDL   85 (306)
T ss_dssp             TEEECCSSCCS-SCCSCC---CTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEEC
T ss_pred             CEEEcCCCCcc-cCCCCC---CCCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEEC
Confidence            45666666665 555432   24566666666666644444455666666666666665522  2344445556666666


Q ss_pred             CCCcCcccCCccccCCCCCCEEEccCccccCCCc-hhhcCCCCCCEEECcCCcccccCchhhhhcCcCCcEEEccCCccc
Q 036375          674 SYSSLSGVIPASLGQLTRLQSLHLNNNKLTGNLP-SSFQNLTSLETLDLGNNRFSGNIPSLLGNGFVGLRILSLRSNAFS  752 (1009)
Q Consensus       674 s~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p-~~~~~l~~L~~L~L~~N~l~~~ip~~l~~~l~~L~~L~L~~N~l~  752 (1009)
                      ++|.+++ +|..+..+++|++|++++|++++..+ ..+..+++|++|++++|.+.+..|..+. .+++|+.|++++|.++
T Consensus        86 s~n~i~~-l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~-~l~~L~~L~l~~n~l~  163 (306)
T 2z66_A           86 SFNGVIT-MSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFN-GLSSLEVLKMAGNSFQ  163 (306)
T ss_dssp             CSCSEEE-EEEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTT-TCTTCCEEECTTCEEG
T ss_pred             CCCcccc-ChhhcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcc-cCcCCCEEECCCCccc
Confidence            6665552 34445555555555555555554333 3455555555555555555544333333 2445555555555444


Q ss_pred             c-cCCcccCCCCCCCEEEccCCcCCCCCChhhhhhhhhhhccchhhhhhccccccceeeceEEEeecCCCCCCCCceeEE
Q 036375          753 G-EIPSKLSNLSSLQVLDLAENNLTGSIPGSVGDLKAMAHVQNIVKYLLFGRYRGIYYEENLVINTKGSSKDTPRLFHFI  831 (1009)
Q Consensus       753 ~-~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L  831 (1009)
                      + .+|..+..+++|++                                                               |
T Consensus       164 ~~~~~~~~~~l~~L~~---------------------------------------------------------------L  180 (306)
T 2z66_A          164 ENFLPDIFTELRNLTF---------------------------------------------------------------L  180 (306)
T ss_dssp             GGEECSCCTTCTTCCE---------------------------------------------------------------E
T ss_pred             cccchhHHhhCcCCCE---------------------------------------------------------------E
Confidence            3 34444444444444                                                               4


Q ss_pred             EccCCccCCCCCccccCcCCCCeEEccCCcccccCCCCccCCCCCCEEeCCCCcCCCCCcccccCCC-CCCeEeCCCCcc
Q 036375          832 DLSGNNLHGDFPTQLTKLVGLVVLNLSRNHIGGQIPENISGLHQLASLDLSSNNLSGGIPSSLSSLS-FLGYINLSRNQL  910 (1009)
Q Consensus       832 ~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~-~L~~L~ls~N~l  910 (1009)
                      +|++|++++..|..+..+++|++|+|++|++++..+..+..+++|++||+++|++++.+|..+..++ +|++|++++|++
T Consensus       181 ~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~L~~N~~  260 (306)
T 2z66_A          181 DLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDF  260 (306)
T ss_dssp             ECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBCSSSSCCCCCTTCCEEECTTCCE
T ss_pred             ECCCCCcCCcCHHHhcCCCCCCEEECCCCccCccChhhccCcccCCEeECCCCCCcccCHHHHHhhhccCCEEEccCCCe
Confidence            5555555544555555555666666666666655555566666666666666666666666666653 666666666666


Q ss_pred             eec
Q 036375          911 SGK  913 (1009)
Q Consensus       911 ~g~  913 (1009)
                      ++.
T Consensus       261 ~~~  263 (306)
T 2z66_A          261 ACT  263 (306)
T ss_dssp             ECS
T ss_pred             ecc
Confidence            554

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=99.95  E-value=6.4e-28  Score=265.54  Aligned_cols=224  Identities=22%  Similarity=0.307  Sum_probs=159.1

Q ss_pred             CCCeEEccCCcCCccCcCcccCCCCCCEEECCCCcCcccCCccccCCCCCCEEEccCccccCCCchhhcCCCCCCEEECc
Q 036375          643 LLQVIDLSRNSISGSISSSIGNCTFLKVLDLSYSSLSGVIPASLGQLTRLQSLHLNNNKLTGNLPSSFQNLTSLETLDLG  722 (1009)
Q Consensus       643 ~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~  722 (1009)
                      .++.|++++|.++ .+|..+..+++|++|++++|.++ .+|..++.+++|++|++++|+++ .+|..+..+++|++|+++
T Consensus        82 ~l~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L~L~  158 (328)
T 4fcg_A           82 GRVALELRSVPLP-QFPDQAFRLSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLRELSIR  158 (328)
T ss_dssp             TCCEEEEESSCCS-SCCSCGGGGTTCSEEEEESSCCC-CCCSCGGGGTTCSEEEEESCCCC-CCCGGGGGCTTCCEEEEE
T ss_pred             ceeEEEccCCCch-hcChhhhhCCCCCEEECCCCCcc-chhHHHhccCCCCEEECCCCccc-cCcHHHhcCcCCCEEECC
Confidence            3444444444444 33334444444444444444444 44444444444444444444444 344444444455555555


Q ss_pred             CCcccccCchhhh--------hcCcCCcEEEccCCcccccCCcccCCCCCCCEEEccCCcCCCCCChhhhhhhhhhhccc
Q 036375          723 NNRFSGNIPSLLG--------NGFVGLRILSLRSNAFSGEIPSKLSNLSSLQVLDLAENNLTGSIPGSVGDLKAMAHVQN  794 (1009)
Q Consensus       723 ~N~l~~~ip~~l~--------~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~~~~  794 (1009)
                      +|++.+.+|..+.        .++++|+.|++++|+++ .+|..+..+++|++|++++|++++ +|..++.+++|     
T Consensus       159 ~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~N~l~~-l~~~l~~l~~L-----  231 (328)
T 4fcg_A          159 ACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLSA-LGPAIHHLPKL-----  231 (328)
T ss_dssp             EETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCC-CCCGGGGGCTTCCEEEEESSCCCC-CCGGGGGCTTC-----
T ss_pred             CCCCccccChhHhhccchhhhccCCCCCEEECcCCCcC-cchHhhcCCCCCCEEEccCCCCCc-CchhhccCCCC-----
Confidence            4444444444332        14788888888888887 778888888889999999998885 56667777766     


Q ss_pred             hhhhhhccccccceeeceEEEeecCCCCCCCCceeEEEccCCccCCCCCccccCcCCCCeEEccCCcccccCCCCccCCC
Q 036375          795 IVKYLLFGRYRGIYYEENLVINTKGSSKDTPRLFHFIDLSGNNLHGDFPTQLTKLVGLVVLNLSRNHIGGQIPENISGLH  874 (1009)
Q Consensus       795 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~  874 (1009)
                                                        +.|+|++|++.+.+|..++++++|+.|+|++|++.+.+|..+++++
T Consensus       232 ----------------------------------~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~  277 (328)
T 4fcg_A          232 ----------------------------------EELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLT  277 (328)
T ss_dssp             ----------------------------------CEEECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCT
T ss_pred             ----------------------------------CEEECcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcchhhhcCC
Confidence                                              8889999999999999999999999999999999999999999999


Q ss_pred             CCCEEeCCCCcCCCCCcccccCCCCCCeEeCCCCcc
Q 036375          875 QLASLDLSSNNLSGGIPSSLSSLSFLGYINLSRNQL  910 (1009)
Q Consensus       875 ~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~ls~N~l  910 (1009)
                      +|++|+|++|++.+.+|..++++++|+.++++.|.+
T Consensus       278 ~L~~L~L~~n~~~~~iP~~l~~L~~L~~l~l~~~~~  313 (328)
T 4fcg_A          278 QLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPHLQ  313 (328)
T ss_dssp             TCCEEECTTCTTCCCCCGGGGGSCTTCEEECCGGGS
T ss_pred             CCCEEeCCCCCchhhccHHHhhccCceEEeCCHHHH
Confidence            999999999999999999999999999999987755

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=99.95  E-value=1.1e-27  Score=262.01  Aligned_cols=249  Identities=22%  Similarity=0.277  Sum_probs=194.5

Q ss_pred             CeEEccCCcCCccCcCcccCCCCCCEEECCCCcCcccCCccccCCCCCCEEEccCccccC--CCchhhcCCCCCCEEECc
Q 036375          645 QVIDLSRNSISGSISSSIGNCTFLKVLDLSYSSLSGVIPASLGQLTRLQSLHLNNNKLTG--NLPSSFQNLTSLETLDLG  722 (1009)
Q Consensus       645 ~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~--~~p~~~~~l~~L~~L~L~  722 (1009)
                      +.++.+++.++ .+|..+.  ++|++|++++|+++...+..|..+++|++|++++|+++.  ..|..+..+++|++|+++
T Consensus        10 ~~l~c~~~~l~-~ip~~~~--~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls   86 (306)
T 2z66_A           10 TEIRCNSKGLT-SVPTGIP--SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLS   86 (306)
T ss_dssp             TEEECCSSCCS-SCCSCCC--TTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECC
T ss_pred             CEEEcCCCCcc-cCCCCCC--CCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECC
Confidence            45666666665 3343332  467777777777775544556777777777777777763  235666677788888888


Q ss_pred             CCcccccCchhhhhcCcCCcEEEccCCcccccCC-cccCCCCCCCEEEccCCcCCCCCChhhhhhhhhhhccchhhhhhc
Q 036375          723 NNRFSGNIPSLLGNGFVGLRILSLRSNAFSGEIP-SKLSNLSSLQVLDLAENNLTGSIPGSVGDLKAMAHVQNIVKYLLF  801 (1009)
Q Consensus       723 ~N~l~~~ip~~l~~~l~~L~~L~L~~N~l~~~~p-~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~~~~~~~~~~~  801 (1009)
                      +|.+. .+|..+. .+++|+.|++++|++++..+ ..+..+++|++|++++|++++..|..+..+++|            
T Consensus        87 ~n~i~-~l~~~~~-~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L------------  152 (306)
T 2z66_A           87 FNGVI-TMSSNFL-GLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSL------------  152 (306)
T ss_dssp             SCSEE-EEEEEEE-TCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTC------------
T ss_pred             CCccc-cChhhcC-CCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCC------------
Confidence            88776 5666554 47888888888888875544 567888888999999998888888777777766            


Q ss_pred             cccccceeeceEEEeecCCCCCCCCceeEEEccCCccCC-CCCccccCcCCCCeEEccCCcccccCCCCccCCCCCCEEe
Q 036375          802 GRYRGIYYEENLVINTKGSSKDTPRLFHFIDLSGNNLHG-DFPTQLTKLVGLVVLNLSRNHIGGQIPENISGLHQLASLD  880 (1009)
Q Consensus       802 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~Ls~N~l~~-~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~  880 (1009)
                                                 +.|+|++|.+++ .+|..+..+++|++|++++|++++..|..+..+++|++|+
T Consensus       153 ---------------------------~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~  205 (306)
T 2z66_A          153 ---------------------------EVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLN  205 (306)
T ss_dssp             ---------------------------CEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEE
T ss_pred             ---------------------------CEEECCCCccccccchhHHhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEE
Confidence                                       788999999987 6788999999999999999999999999999999999999


Q ss_pred             CCCCcCCCCCcccccCCCCCCeEeCCCCcceecCCCC-CCC-CcccCCcCCCCCCCCCC
Q 036375          881 LSSNNLSGGIPSSLSSLSFLGYINLSRNQLSGKIPFE-GHM-TTFDASSFAGNPGLCGD  937 (1009)
Q Consensus       881 Ls~N~l~~~ip~~l~~l~~L~~L~ls~N~l~g~ip~~-~~~-~~~~~~~~~~n~~lc~~  937 (1009)
                      +++|++++..+..+..+++|++||+++|++++.+|.. ..+ ..+....+.+|+.-|.+
T Consensus       206 L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~L~~N~~~~~c  264 (306)
T 2z66_A          206 MSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTC  264 (306)
T ss_dssp             CTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBCSSSSCCCCCTTCCEEECTTCCEECSG
T ss_pred             CCCCccCccChhhccCcccCCEeECCCCCCcccCHHHHHhhhccCCEEEccCCCeeccc
Confidence            9999999988889999999999999999999988864 222 35556678899887764

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=99.95  E-value=3.3e-29  Score=301.50  Aligned_cols=154  Identities=13%  Similarity=0.076  Sum_probs=80.3

Q ss_pred             CCCCCCEEEccCCccccc----CchhhhcccCCCEEEcCCCcCCCCC----CccccccccccCCCCCCCCCcEEECcCCc
Q 036375          319 NMTSLTNFDLFDKKVEGG----IPSSIARLCYLKEFDLSGNNLTGSL----PEILQGTDLCVSSNSPLPSLISMRLGNNH  390 (1009)
Q Consensus       319 ~l~~L~~L~l~~n~~~~~----~~~~l~~l~~L~~L~l~~n~l~~~~----~~~~~~~~~~~~~~~~l~~L~~L~L~~n~  390 (1009)
                      ++++|++|++++|.+.+.    ++..+..+++|++|++++|.+++..    +..+.          .+++|++|++++|.
T Consensus       162 ~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~----------~~~~L~~L~L~~~~  231 (592)
T 3ogk_B          162 HCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIAR----------NCRSLVSVKVGDFE  231 (592)
T ss_dssp             HCTTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHH----------HCTTCCEEECSSCB
T ss_pred             hCCCCCEEECccccccCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHHHHHHh----------hCCCCcEEeccCcc
Confidence            556666666666655444    2333445566666666666554222    12222          35566666666666


Q ss_pred             CcccCChhhcCCCCCCEEeCcCCccc---ccCCCCCCCCCCCcEEeCCCCcCCCCCCcccCCCCCCCEEEccCccccccc
Q 036375          391 LKGKLPEWLSQLENLVELTLSYNLLQ---GPIPASLGNLKNLTKLNLPGNQLNGTLPETLGSLPELSVLDVSSNSLTGII  467 (1009)
Q Consensus       391 l~~~~~~~l~~l~~L~~L~Ls~n~l~---~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~  467 (1009)
                      +.+ ++..+..+++|++|+++.+...   ...+..+..+++|+.|+++++.. ..+|..+..+++|++|++++|.+++..
T Consensus       232 ~~~-l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~-~~l~~~~~~~~~L~~L~Ls~~~l~~~~  309 (592)
T 3ogk_B          232 ILE-LVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGP-NEMPILFPFAAQIRKLDLLYALLETED  309 (592)
T ss_dssp             GGG-GHHHHHHCTTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTCCT-TTGGGGGGGGGGCCEEEETTCCCCHHH
T ss_pred             HHH-HHHHHhhhhHHHhhcccccccccchHHHHHHhhccccccccCccccch-hHHHHHHhhcCCCcEEecCCCcCCHHH
Confidence            553 4455666666666666543221   12233455566666666665432 244555555666666666666654333


Q ss_pred             chhhhccCCCCcEEeCC
Q 036375          468 SEIHFSRLSKLKFLGLS  484 (1009)
Q Consensus       468 ~~~~~~~l~~L~~L~L~  484 (1009)
                      ....+..+++|++|+++
T Consensus       310 ~~~~~~~~~~L~~L~L~  326 (592)
T 3ogk_B          310 HCTLIQKCPNLEVLETR  326 (592)
T ss_dssp             HHHHHTTCTTCCEEEEE
T ss_pred             HHHHHHhCcCCCEEecc
Confidence            22234555555555554

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=99.95  E-value=5.4e-28  Score=270.17  Aligned_cols=261  Identities=22%  Similarity=0.225  Sum_probs=219.6

Q ss_pred             CCccEEEccCCcCCCcCCchhhcCCCCccEEEccCCcccccCCcccccCCCCCeEEccCCcCCccCcCcccCCCCCCEEE
Q 036375          593 VEIELLDLSNNHFSGPIPQNISGSMPNLIFLSVSGNRLTGKIPGSIGEMQLLQVIDLSRNSISGSISSSIGNCTFLKVLD  672 (1009)
Q Consensus       593 ~~L~~L~Ls~n~l~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~  672 (1009)
                      .++++|++++|.++ .+|...+..+++|++|++++|++++..+..|.++++|++|++++|++++..+..+.++++|++|+
T Consensus        52 ~~L~~L~l~~n~i~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~  130 (353)
T 2z80_A           52 EAVKSLDLSNNRIT-YISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLN  130 (353)
T ss_dssp             TTCCEEECTTSCCC-EECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSSCCHHHHTTCTTCSEEE
T ss_pred             ccCcEEECCCCcCc-ccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCcCCcCCHhHhCCCccCCEEE
Confidence            68999999999998 56666678899999999999999999899999999999999999999977776799999999999


Q ss_pred             CCCCcCcccCC-ccccCCCCCCEEEccCc-cccCCCchhhcCCCCCCEEECcCCcccccCchhhhhcCcCCcEEEccCCc
Q 036375          673 LSYSSLSGVIP-ASLGQLTRLQSLHLNNN-KLTGNLPSSFQNLTSLETLDLGNNRFSGNIPSLLGNGFVGLRILSLRSNA  750 (1009)
Q Consensus       673 Ls~N~l~~~~p-~~~~~l~~L~~L~L~~N-~l~~~~p~~~~~l~~L~~L~L~~N~l~~~ip~~l~~~l~~L~~L~L~~N~  750 (1009)
                      +++|++++..+ ..+..+++|++|++++| .+.+..+..|..+++|++|++++|.+++..|..+. .+++|+.|++++|+
T Consensus       131 L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~-~l~~L~~L~l~~n~  209 (353)
T 2z80_A          131 LLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLK-SIQNVSHLILHMKQ  209 (353)
T ss_dssp             CTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTT-TCSEEEEEEEECSC
T ss_pred             CCCCCCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCcCccCHHHHh-ccccCCeecCCCCc
Confidence            99999996544 47899999999999999 47777778899999999999999999988888877 49999999999999


Q ss_pred             ccccCCcccCCCCCCCEEEccCCcCCCCCChhhhhhhhhhhccchhhhhhccccccceeeceEEEeecCCCCCCCCceeE
Q 036375          751 FSGEIPSKLSNLSSLQVLDLAENNLTGSIPGSVGDLKAMAHVQNIVKYLLFGRYRGIYYEENLVINTKGSSKDTPRLFHF  830 (1009)
Q Consensus       751 l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  830 (1009)
                      +....+..+..+++|+.|++++|++++..+..+......                                    ..++.
T Consensus       210 l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~~------------------------------------~~l~~  253 (353)
T 2z80_A          210 HILLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETN------------------------------------SLIKK  253 (353)
T ss_dssp             STTHHHHHHHHTTTEEEEEEESCBCTTCCCC------CC------------------------------------CCCCE
T ss_pred             cccchhhhhhhcccccEEECCCCcccccccccccccccc------------------------------------chhhc
Confidence            974433345568999999999999998766544332211                                    12367


Q ss_pred             EEccCCccCC----CCCccccCcCCCCeEEccCCcccccCCCCccCCCCCCEEeCCCCcCCCCCc
Q 036375          831 IDLSGNNLHG----DFPTQLTKLVGLVVLNLSRNHIGGQIPENISGLHQLASLDLSSNNLSGGIP  891 (1009)
Q Consensus       831 L~Ls~N~l~~----~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip  891 (1009)
                      ++|++|.+++    .+|..+.++++|+.|+|++|+++...+..|+++++|++|++++|.+++..|
T Consensus       254 l~L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~~~~~~~  318 (353)
T 2z80_A          254 FTFRNVKITDESLFQVMKLLNQISGLLELEFSRNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP  318 (353)
T ss_dssp             EEEESCBCCHHHHHHHHHHHHTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred             cccccccccCcchhhhHHHHhcccCCCEEECCCCCCCccCHHHHhcCCCCCEEEeeCCCccCcCC
Confidence            7888888876    478889999999999999999995555557999999999999999998765

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=99.95  E-value=1.5e-26  Score=267.56  Aligned_cols=249  Identities=24%  Similarity=0.305  Sum_probs=151.5

Q ss_pred             ccEEEccCCcCCCcCCchhhcCCCCccEEEccCCcccccCCcccccCCCCCeEEccCCcCCccCcCcccCCCCCCEEECC
Q 036375          595 IELLDLSNNHFSGPIPQNISGSMPNLIFLSVSGNRLTGKIPGSIGEMQLLQVIDLSRNSISGSISSSIGNCTFLKVLDLS  674 (1009)
Q Consensus       595 L~~L~Ls~n~l~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls  674 (1009)
                      ...++.++..++ .+|..+   .+++++|++++|++++..+..|.++++|++|++++|++++..+..|.++++|++|+|+
T Consensus        56 ~~~v~c~~~~l~-~iP~~~---~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~  131 (452)
T 3zyi_A           56 FSKVVCTRRGLS-EVPQGI---PSNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELF  131 (452)
T ss_dssp             SCEEECCSSCCS-SCCSCC---CTTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECC
T ss_pred             CcEEEECCCCcC-ccCCCC---CCCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECC
Confidence            456777776666 556433   2456666666666666666666666666666666666665555566666666666666


Q ss_pred             CCcCcccCCccccCCCCCCEEEccCccccCCCchhhcCCCCCCEEECcCCcccccCchhhhhcCcCCcEEEccCCccccc
Q 036375          675 YSSLSGVIPASLGQLTRLQSLHLNNNKLTGNLPSSFQNLTSLETLDLGNNRFSGNIPSLLGNGFVGLRILSLRSNAFSGE  754 (1009)
Q Consensus       675 ~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~ip~~l~~~l~~L~~L~L~~N~l~~~  754 (1009)
                      +|++++..+..|..+++|++|+|++|++++..+..|..+++|++|++++|...+.+|..                     
T Consensus       132 ~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~---------------------  190 (452)
T 3zyi_A          132 DNWLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEG---------------------  190 (452)
T ss_dssp             SSCCSBCCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTT---------------------
T ss_pred             CCcCCccChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChh---------------------
Confidence            66666555555555666666666666655444445555555555555554333344433                     


Q ss_pred             CCcccCCCCCCCEEEccCCcCCCCCChhhhhhhhhhhccchhhhhhccccccceeeceEEEeecCCCCCCCCceeEEEcc
Q 036375          755 IPSKLSNLSSLQVLDLAENNLTGSIPGSVGDLKAMAHVQNIVKYLLFGRYRGIYYEENLVINTKGSSKDTPRLFHFIDLS  834 (1009)
Q Consensus       755 ~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~Ls  834 (1009)
                         .+..+++|++|++++|++++. | .+..+++|                                       +.|+|+
T Consensus       191 ---~~~~l~~L~~L~L~~n~l~~~-~-~~~~l~~L---------------------------------------~~L~Ls  226 (452)
T 3zyi_A          191 ---AFEGLFNLKYLNLGMCNIKDM-P-NLTPLVGL---------------------------------------EELEMS  226 (452)
T ss_dssp             ---TTTTCTTCCEEECTTSCCSSC-C-CCTTCTTC---------------------------------------CEEECT
T ss_pred             ---hccCCCCCCEEECCCCccccc-c-cccccccc---------------------------------------cEEECc
Confidence               344555555555555555432 2 12233332                                       566666


Q ss_pred             CCccCCCCCccccCcCCCCeEEccCCcccccCCCCccCCCCCCEEeCCCCcCCCCCcccccCCCCCCeEeCCCCccee
Q 036375          835 GNNLHGDFPTQLTKLVGLVVLNLSRNHIGGQIPENISGLHQLASLDLSSNNLSGGIPSSLSSLSFLGYINLSRNQLSG  912 (1009)
Q Consensus       835 ~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~ls~N~l~g  912 (1009)
                      +|++++..|..|.++++|+.|+|++|++++..|..|.++++|+.|||++|++++..+..+..+++|++|++++|++..
T Consensus       227 ~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~C  304 (452)
T 3zyi_A          227 GNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHNPWNC  304 (452)
T ss_dssp             TSCCSEECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTSSTTCTTCCEEECCSSCEEC
T ss_pred             CCcCcccCcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCCccChHHhccccCCCEEEccCCCcCC
Confidence            666666666667777777777777777777777777777777777777777776666667777777777777777654

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=99.95  E-value=1.1e-26  Score=268.79  Aligned_cols=210  Identities=20%  Similarity=0.227  Sum_probs=161.0

Q ss_pred             cCeEeccCCCCCCCCCCCCCCccEEEccCCcCCCcCCchhhcCCCCccEEEccCCcccccCCcccccCCCCCeEEccCCc
Q 036375          574 FADVDFRSNLLEGPIPLPIVEIELLDLSNNHFSGPIPQNISGSMPNLIFLSVSGNRLTGKIPGSIGEMQLLQVIDLSRNS  653 (1009)
Q Consensus       574 l~~l~l~~n~l~~~~~~~~~~L~~L~Ls~n~l~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~  653 (1009)
                      ...++.++..++........+++.|++++|.+++. +...+..+++|++|++++|++++..+..|.++++|++|++++|+
T Consensus        56 ~~~v~c~~~~l~~iP~~~~~~l~~L~L~~n~i~~~-~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~  134 (452)
T 3zyi_A           56 FSKVVCTRRGLSEVPQGIPSNTRYLNLMENNIQMI-QADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNW  134 (452)
T ss_dssp             SCEEECCSSCCSSCCSCCCTTCSEEECCSSCCCEE-CTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSC
T ss_pred             CcEEEECCCCcCccCCCCCCCccEEECcCCcCceE-CHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCc
Confidence            45667777766643222347899999999999954 44566789999999999999999999999999999999999999


Q ss_pred             CCccCcCcccCCCCCCEEECCCCcCcccCCccccCCCCCCEEEccCcc-ccCCCchhhcCCCCCCEEECcCCcccccCch
Q 036375          654 ISGSISSSIGNCTFLKVLDLSYSSLSGVIPASLGQLTRLQSLHLNNNK-LTGNLPSSFQNLTSLETLDLGNNRFSGNIPS  732 (1009)
Q Consensus       654 l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~-l~~~~p~~~~~l~~L~~L~L~~N~l~~~ip~  732 (1009)
                      +++..+..|.++++|++|++++|++++..+..|..+++|++|++++|. +....+..|..+++|++|++++|.++ .+|.
T Consensus       135 l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~-~~~~  213 (452)
T 3zyi_A          135 LTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIK-DMPN  213 (452)
T ss_dssp             CSBCCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCS-SCCC
T ss_pred             CCccChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCccc-cccc
Confidence            998888889999999999999999998888899999999999999954 55444456889999999999999887 4553


Q ss_pred             hhhhcCcCCcEEEccCCcccccCCcccCCCCCCCEEEccCCcCCCCCChhhhhhh
Q 036375          733 LLGNGFVGLRILSLRSNAFSGEIPSKLSNLSSLQVLDLAENNLTGSIPGSVGDLK  787 (1009)
Q Consensus       733 ~l~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~  787 (1009)
                       +. .+++|+.|++++|++++..|..|..+++|+.|++++|++++..|..|.+++
T Consensus       214 -~~-~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~  266 (452)
T 3zyi_A          214 -LT-PLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLA  266 (452)
T ss_dssp             -CT-TCTTCCEEECTTSCCSEECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCT
T ss_pred             -cc-ccccccEEECcCCcCcccCcccccCccCCCEEEeCCCcCceECHHHhcCCC
Confidence             22 355666666666666655555555555555555555555544444433333

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=99.95  E-value=1.1e-26  Score=267.71  Aligned_cols=249  Identities=25%  Similarity=0.313  Sum_probs=152.8

Q ss_pred             ccEEEccCCcCCCcCCchhhcCCCCccEEEccCCcccccCCcccccCCCCCeEEccCCcCCccCcCcccCCCCCCEEECC
Q 036375          595 IELLDLSNNHFSGPIPQNISGSMPNLIFLSVSGNRLTGKIPGSIGEMQLLQVIDLSRNSISGSISSSIGNCTFLKVLDLS  674 (1009)
Q Consensus       595 L~~L~Ls~n~l~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls  674 (1009)
                      ...++.++..++ .+|..+   .++++.|++++|++++..+..|.++++|++|++++|++++..+..|.++++|++|+|+
T Consensus        45 ~~~v~c~~~~l~-~iP~~~---~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~  120 (440)
T 3zyj_A           45 FSKVICVRKNLR-EVPDGI---STNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELF  120 (440)
T ss_dssp             SCEEECCSCCCS-SCCSCC---CTTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECC
T ss_pred             CCEEEeCCCCcC-cCCCCC---CCCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECC
Confidence            456677776666 666543   2566677777777666666666666667777777666666666666666666666666


Q ss_pred             CCcCcccCCccccCCCCCCEEEccCccccCCCchhhcCCCCCCEEECcCCcccccCchhhhhcCcCCcEEEccCCccccc
Q 036375          675 YSSLSGVIPASLGQLTRLQSLHLNNNKLTGNLPSSFQNLTSLETLDLGNNRFSGNIPSLLGNGFVGLRILSLRSNAFSGE  754 (1009)
Q Consensus       675 ~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~ip~~l~~~l~~L~~L~L~~N~l~~~  754 (1009)
                      +|++++..+..|..+++|++|++++|++++..+..|..+++|++|++++|...+.++...+.++++|+.|++++|+++ .
T Consensus       121 ~n~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~-~  199 (440)
T 3zyj_A          121 DNRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLR-E  199 (440)
T ss_dssp             SSCCSSCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCS-S
T ss_pred             CCcCCeeCHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCc-c
Confidence            666665555566666666666666666665555566666666666666644433444433333555555555555444 2


Q ss_pred             CCcccCCCCCCCEEEccCCcCCCCCChhhhhhhhhhhccchhhhhhccccccceeeceEEEeecCCCCCCCCceeEEEcc
Q 036375          755 IPSKLSNLSSLQVLDLAENNLTGSIPGSVGDLKAMAHVQNIVKYLLFGRYRGIYYEENLVINTKGSSKDTPRLFHFIDLS  834 (1009)
Q Consensus       755 ~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~Ls  834 (1009)
                      +| .+..+++|                                                               +.|||+
T Consensus       200 ~~-~~~~l~~L---------------------------------------------------------------~~L~Ls  215 (440)
T 3zyj_A          200 IP-NLTPLIKL---------------------------------------------------------------DELDLS  215 (440)
T ss_dssp             CC-CCTTCSSC---------------------------------------------------------------CEEECT
T ss_pred             cc-ccCCCccc---------------------------------------------------------------CEEECC
Confidence            22 23334444                                                               555555


Q ss_pred             CCccCCCCCccccCcCCCCeEEccCCcccccCCCCccCCCCCCEEeCCCCcCCCCCcccccCCCCCCeEeCCCCccee
Q 036375          835 GNNLHGDFPTQLTKLVGLVVLNLSRNHIGGQIPENISGLHQLASLDLSSNNLSGGIPSSLSSLSFLGYINLSRNQLSG  912 (1009)
Q Consensus       835 ~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~ls~N~l~g  912 (1009)
                      +|++++..|..|.++++|+.|+|++|++++..+..|.++++|+.|||++|++++..+..|..+++|++|++++|++..
T Consensus       216 ~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~C  293 (440)
T 3zyj_A          216 GNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHNPWNC  293 (440)
T ss_dssp             TSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCCCCCTTTTSSCTTCCEEECCSSCEEC
T ss_pred             CCccCccChhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCCccChhHhccccCCCEEEcCCCCccC
Confidence            555555555666666666666666666666666666666666666666666666666666666666666666666643

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=99.95  E-value=1.9e-26  Score=265.69  Aligned_cols=248  Identities=25%  Similarity=0.311  Sum_probs=165.9

Q ss_pred             CeEEccCCcCCccCcCcccCCCCCCEEECCCCcCcccCCccccCCCCCCEEEccCccccCCCchhhcCCCCCCEEECcCC
Q 036375          645 QVIDLSRNSISGSISSSIGNCTFLKVLDLSYSSLSGVIPASLGQLTRLQSLHLNNNKLTGNLPSSFQNLTSLETLDLGNN  724 (1009)
Q Consensus       645 ~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N  724 (1009)
                      +.++.+++.++ .+|..+.  ++++.|+|++|++++..+..|.++++|++|+|++|++++..+..|.++++|++|+|++|
T Consensus        46 ~~v~c~~~~l~-~iP~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n  122 (440)
T 3zyj_A           46 SKVICVRKNLR-EVPDGIS--TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDN  122 (440)
T ss_dssp             CEEECCSCCCS-SCCSCCC--TTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSS
T ss_pred             CEEEeCCCCcC-cCCCCCC--CCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCC
Confidence            34444444444 2333332  34555555555555555555555555555555555555555555555555555555555


Q ss_pred             cccccCchhhhhcCcCCcEEEccCCcccccCCcccCCCCCCCEEEccCCcCCCCCCh-hhhhhhhhhhccchhhhhhccc
Q 036375          725 RFSGNIPSLLGNGFVGLRILSLRSNAFSGEIPSKLSNLSSLQVLDLAENNLTGSIPG-SVGDLKAMAHVQNIVKYLLFGR  803 (1009)
Q Consensus       725 ~l~~~ip~~l~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~-~~~~l~~L~~~~~~~~~~~~~~  803 (1009)
                      +++ .+|...+..+++|+.|++++|++++..+..|..+++|++|++++|+..+.+|. .|.++++|              
T Consensus       123 ~l~-~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L--------------  187 (440)
T 3zyj_A          123 RLT-TIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNL--------------  187 (440)
T ss_dssp             CCS-SCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSC--------------
T ss_pred             cCC-eeCHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhccccc--------------
Confidence            555 33332222355566666666665544455566666666666666443333333 45555544              


Q ss_pred             cccceeeceEEEeecCCCCCCCCceeEEEccCCccCCCCCccccCcCCCCeEEccCCcccccCCCCccCCCCCCEEeCCC
Q 036375          804 YRGIYYEENLVINTKGSSKDTPRLFHFIDLSGNNLHGDFPTQLTKLVGLVVLNLSRNHIGGQIPENISGLHQLASLDLSS  883 (1009)
Q Consensus       804 ~~~~~~~~~~~~~~~~~~~~~~~~l~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~  883 (1009)
                                               +.|+|++|+++ .+| .+..+++|+.|+|++|++++..|..|.++++|+.|+|++
T Consensus       188 -------------------------~~L~L~~n~l~-~~~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~  240 (440)
T 3zyj_A          188 -------------------------RYLNLAMCNLR-EIP-NLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQ  240 (440)
T ss_dssp             -------------------------CEEECTTSCCS-SCC-CCTTCSSCCEEECTTSCCCEECTTTTTTCTTCCEEECTT
T ss_pred             -------------------------CeecCCCCcCc-ccc-ccCCCcccCEEECCCCccCccChhhhccCccCCEEECCC
Confidence                                     66777777776 344 478899999999999999999999999999999999999


Q ss_pred             CcCCCCCcccccCCCCCCeEeCCCCcceecCCCC-CCCCcccCCcCCCCCCCCCC
Q 036375          884 NNLSGGIPSSLSSLSFLGYINLSRNQLSGKIPFE-GHMTTFDASSFAGNPGLCGD  937 (1009)
Q Consensus       884 N~l~~~ip~~l~~l~~L~~L~ls~N~l~g~ip~~-~~~~~~~~~~~~~n~~lc~~  937 (1009)
                      |++++..|..|.++++|++||+++|++++..|.. ..+..+....+.+||+.|.+
T Consensus       241 n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~CdC  295 (440)
T 3zyj_A          241 SQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHNPWNCNC  295 (440)
T ss_dssp             CCCCEECTTSSTTCTTCCEEECTTSCCCCCCTTTTSSCTTCCEEECCSSCEECSS
T ss_pred             CceeEEChhhhcCCCCCCEEECCCCCCCccChhHhccccCCCEEEcCCCCccCCC
Confidence            9999999999999999999999999999766543 34556666778999999965

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=99.94  E-value=7e-27  Score=252.74  Aligned_cols=229  Identities=25%  Similarity=0.269  Sum_probs=156.8

Q ss_pred             CeEEccCCcCCccCcCcccCCCCCCEEECCCCcCcccCCccccCCCCCCEEEccCccccCCCchhhcCCCCCCEEECcCC
Q 036375          645 QVIDLSRNSISGSISSSIGNCTFLKVLDLSYSSLSGVIPASLGQLTRLQSLHLNNNKLTGNLPSSFQNLTSLETLDLGNN  724 (1009)
Q Consensus       645 ~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N  724 (1009)
                      ++++.+++.++. +|..+  .++|++|++++|++++..+..|..+++|++|++++|.+++..|..|..+++|++|++++|
T Consensus        14 ~~~~c~~~~l~~-ip~~~--~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n   90 (285)
T 1ozn_A           14 VTTSCPQQGLQA-VPVGI--PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDN   90 (285)
T ss_dssp             CEEECCSSCCSS-CCTTC--CTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSC
T ss_pred             eEEEcCcCCccc-CCcCC--CCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCC
Confidence            345555555542 23222  245566666666666555555566666666666666666555556666666666666666


Q ss_pred             c-ccccCchhhhhcCcCCcEEEccCCcccccCCcccCCCCCCCEEEccCCcCCCCCChhhhhhhhhhhccchhhhhhccc
Q 036375          725 R-FSGNIPSLLGNGFVGLRILSLRSNAFSGEIPSKLSNLSSLQVLDLAENNLTGSIPGSVGDLKAMAHVQNIVKYLLFGR  803 (1009)
Q Consensus       725 ~-l~~~ip~~l~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~~~~~~~~~~~~~  803 (1009)
                      . +.+..|..+. .+++|+.|++++|.+++..|..+..+++|++|++++|++++..+..++++++|              
T Consensus        91 ~~l~~~~~~~~~-~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L--------------  155 (285)
T 1ozn_A           91 AQLRSVDPATFH-GLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNL--------------  155 (285)
T ss_dssp             TTCCCCCTTTTT-TCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTC--------------
T ss_pred             CCccccCHHHhc-CCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCc--------------
Confidence            5 4422233333 36666666666666666556667777777777777777776655556666655              


Q ss_pred             cccceeeceEEEeecCCCCCCCCceeEEEccCCccCCCCCccccCcCCCCeEEccCCcccccCCCCccCCCCCCEEeCCC
Q 036375          804 YRGIYYEENLVINTKGSSKDTPRLFHFIDLSGNNLHGDFPTQLTKLVGLVVLNLSRNHIGGQIPENISGLHQLASLDLSS  883 (1009)
Q Consensus       804 ~~~~~~~~~~~~~~~~~~~~~~~~l~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~  883 (1009)
                                               +.|+|++|++++..+..+..+++|+.|++++|++++..|..|+++++|+.|++++
T Consensus       156 -------------------------~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~  210 (285)
T 1ozn_A          156 -------------------------THLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFA  210 (285)
T ss_dssp             -------------------------CEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred             -------------------------cEEECCCCcccccCHHHhcCccccCEEECCCCcccccCHhHccCcccccEeeCCC
Confidence                                     6777777777766666788888889999999999888888888899999999999


Q ss_pred             CcCCCCCcccccCCCCCCeEeCCCCcceecCCC
Q 036375          884 NNLSGGIPSSLSSLSFLGYINLSRNQLSGKIPF  916 (1009)
Q Consensus       884 N~l~~~ip~~l~~l~~L~~L~ls~N~l~g~ip~  916 (1009)
                      |++++..|..+..+++|++|++++|++++..+.
T Consensus       211 n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~~~~  243 (285)
T 1ozn_A          211 NNLSALPTEALAPLRALQYLRLNDNPWVCDCRA  243 (285)
T ss_dssp             SCCSCCCHHHHTTCTTCCEEECCSSCEECSGGG
T ss_pred             CcCCcCCHHHcccCcccCEEeccCCCccCCCCc
Confidence            999987777888889999999999988876553

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=99.94  E-value=4.8e-27  Score=254.04  Aligned_cols=252  Identities=22%  Similarity=0.263  Sum_probs=139.7

Q ss_pred             cEEEccCCcCCCcCCchhhcCCCCccEEEccCCcccccCCcccccCCCCCeEEccCCcCCccCcCcccCCCCCCEEECCC
Q 036375          596 ELLDLSNNHFSGPIPQNISGSMPNLIFLSVSGNRLTGKIPGSIGEMQLLQVIDLSRNSISGSISSSIGNCTFLKVLDLSY  675 (1009)
Q Consensus       596 ~~L~Ls~n~l~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~  675 (1009)
                      +.++.+++.++ .+|..+   .+++++|++++|.+++..+..|..+++|++|++++|.+++..|..+.++++|++|++++
T Consensus        14 ~~~~c~~~~l~-~ip~~~---~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~   89 (285)
T 1ozn_A           14 VTTSCPQQGLQ-AVPVGI---PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSD   89 (285)
T ss_dssp             CEEECCSSCCS-SCCTTC---CTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred             eEEEcCcCCcc-cCCcCC---CCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCC
Confidence            45666666665 455422   34666666666666665555666666666666666666655556666666666666666


Q ss_pred             Cc-CcccCCccccCCCCCCEEEccCccccCCCchhhcCCCCCCEEECcCCcccccCchhhhhcCcCCcEEEccCCccccc
Q 036375          676 SS-LSGVIPASLGQLTRLQSLHLNNNKLTGNLPSSFQNLTSLETLDLGNNRFSGNIPSLLGNGFVGLRILSLRSNAFSGE  754 (1009)
Q Consensus       676 N~-l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~ip~~l~~~l~~L~~L~L~~N~l~~~  754 (1009)
                      |+ +.+..|..|..+++|++|++++|++++..|..+..+++|++|++++|.++                         +.
T Consensus        90 n~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-------------------------~~  144 (285)
T 1ozn_A           90 NAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQ-------------------------AL  144 (285)
T ss_dssp             CTTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCC-------------------------CC
T ss_pred             CCCccccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCccc-------------------------cc
Confidence            65 55444555566666666666666665555555555555555555555555                         33


Q ss_pred             CCcccCCCCCCCEEEccCCcCCCCCChhhhhhhhhhhccchhhhhhccccccceeeceEEEeecCCCCCCCCceeEEEcc
Q 036375          755 IPSKLSNLSSLQVLDLAENNLTGSIPGSVGDLKAMAHVQNIVKYLLFGRYRGIYYEENLVINTKGSSKDTPRLFHFIDLS  834 (1009)
Q Consensus       755 ~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~Ls  834 (1009)
                      .+..+..+++|++|++++|++++..+..+..+++|                                       +.|+|+
T Consensus       145 ~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L---------------------------------------~~L~l~  185 (285)
T 1ozn_A          145 PDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSL---------------------------------------DRLLLH  185 (285)
T ss_dssp             CTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTC---------------------------------------CEEECC
T ss_pred             CHhHhccCCCccEEECCCCcccccCHHHhcCcccc---------------------------------------CEEECC
Confidence            33334444444444444444443333334443333                                       445555


Q ss_pred             CCccCCCCCccccCcCCCCeEEccCCcccccCCCCccCCCCCCEEeCCCCcCCCCCcccccCCCCCCeEeCCCCcceecC
Q 036375          835 GNNLHGDFPTQLTKLVGLVVLNLSRNHIGGQIPENISGLHQLASLDLSSNNLSGGIPSSLSSLSFLGYINLSRNQLSGKI  914 (1009)
Q Consensus       835 ~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~ls~N~l~g~i  914 (1009)
                      +|.+++..|..+.++++|+.|++++|++++.+++.+..+++|++|++++|.+....+.. .-...++.++.+.|.+.+..
T Consensus       186 ~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~~~~~-~~~~~l~~~~~~~~~~~c~~  264 (285)
T 1ozn_A          186 QNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCRAR-PLWAWLQKFRGSSSEVPCSL  264 (285)
T ss_dssp             SSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEECSGGGH-HHHHHHHHCCSEECCCBEEE
T ss_pred             CCcccccCHhHccCcccccEeeCCCCcCCcCCHHHcccCcccCEEeccCCCccCCCCcH-HHHHHHHhcccccCccccCC
Confidence            55555555555555666666666666666555555666666666666666665433321 11122334445566666666


Q ss_pred             CC
Q 036375          915 PF  916 (1009)
Q Consensus       915 p~  916 (1009)
                      |.
T Consensus       265 p~  266 (285)
T 1ozn_A          265 PQ  266 (285)
T ss_dssp             SG
T ss_pred             ch
Confidence            64

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=99.94  E-value=1.1e-28  Score=270.11  Aligned_cols=204  Identities=25%  Similarity=0.291  Sum_probs=128.5

Q ss_pred             CCCCCCEEECCCCcCcccCCccc--cCCCCCCEEEccCccccCCCchhhcCC-----CCCCEEECcCCcccccCchhhhh
Q 036375          664 NCTFLKVLDLSYSSLSGVIPASL--GQLTRLQSLHLNNNKLTGNLPSSFQNL-----TSLETLDLGNNRFSGNIPSLLGN  736 (1009)
Q Consensus       664 ~l~~L~~L~Ls~N~l~~~~p~~~--~~l~~L~~L~L~~N~l~~~~p~~~~~l-----~~L~~L~L~~N~l~~~ip~~l~~  736 (1009)
                      ++++|++|++++|++++.+|..+  ..+++|++|++++|++++. |..+..+     ++|++|++++|++.+..|..+. 
T Consensus        93 ~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~-  170 (312)
T 1wwl_A           93 GISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVR-  170 (312)
T ss_dssp             TTSCCCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCC-
T ss_pred             CcCCccEEEccCCcccchhHHHHHHhcCCCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhc-
Confidence            34455555555555554444443  4455555555555555544 4444443     5555555555555533333333 


Q ss_pred             cCcCCcEEEccCCccccc--CCccc--CCCCCCCEEEccCCcCCCC--CCh-hhhhhhhhhhccchhhhhhcccccccee
Q 036375          737 GFVGLRILSLRSNAFSGE--IPSKL--SNLSSLQVLDLAENNLTGS--IPG-SVGDLKAMAHVQNIVKYLLFGRYRGIYY  809 (1009)
Q Consensus       737 ~l~~L~~L~L~~N~l~~~--~p~~l--~~l~~L~~L~Ls~N~l~~~--~p~-~~~~l~~L~~~~~~~~~~~~~~~~~~~~  809 (1009)
                      .+++|+.|++++|++.+.  .|..+  ..+++|++|++++|++++.  ++. .+.++++|                    
T Consensus       171 ~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L--------------------  230 (312)
T 1wwl_A          171 VFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQL--------------------  230 (312)
T ss_dssp             CCSSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCC--------------------
T ss_pred             cCCCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCC--------------------
Confidence            355555555555555443  22223  6677778888888877631  111 12233333                    


Q ss_pred             eceEEEeecCCCCCCCCceeEEEccCCccCCCCC-ccccCcCCCCeEEccCCcccccCCCCccCCCCCCEEeCCCCcCCC
Q 036375          810 EENLVINTKGSSKDTPRLFHFIDLSGNNLHGDFP-TQLTKLVGLVVLNLSRNHIGGQIPENISGLHQLASLDLSSNNLSG  888 (1009)
Q Consensus       810 ~~~~~~~~~~~~~~~~~~l~~L~Ls~N~l~~~~p-~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~  888 (1009)
                                         +.|||++|++++.+| ..+..+++|++|+|++|+++ .+|..+.  ++|++|||++|++++
T Consensus       231 -------------------~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~-~ip~~~~--~~L~~L~Ls~N~l~~  288 (312)
T 1wwl_A          231 -------------------QGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLK-QVPKGLP--AKLSVLDLSYNRLDR  288 (312)
T ss_dssp             -------------------SEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSCCS-SCCSSCC--SEEEEEECCSSCCCS
T ss_pred             -------------------CEEECCCCcCCcccchhhhhhcCCCCEEECCCCccC-hhhhhcc--CCceEEECCCCCCCC
Confidence                               778888888888775 45667888999999999998 6777776  889999999999987


Q ss_pred             CCcccccCCCCCCeEeCCCCcceec
Q 036375          889 GIPSSLSSLSFLGYINLSRNQLSGK  913 (1009)
Q Consensus       889 ~ip~~l~~l~~L~~L~ls~N~l~g~  913 (1009)
                      . |. +..+++|++|++++|+++++
T Consensus       289 ~-p~-~~~l~~L~~L~L~~N~l~~~  311 (312)
T 1wwl_A          289 N-PS-PDELPQVGNLSLKGNPFLDS  311 (312)
T ss_dssp             C-CC-TTTSCEEEEEECTTCTTTCC
T ss_pred             C-hh-HhhCCCCCEEeccCCCCCCC
Confidence            6 66 88899999999999988763

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=99.94  E-value=6e-28  Score=265.05  Aligned_cols=267  Identities=19%  Similarity=0.221  Sum_probs=206.7

Q ss_pred             ccEEEccCCcCCCcCCchhhcCCCCccEEEccCCcccccCCcccccCCCCCeEEccCCcCCccCcCcccCCCCCCEEECC
Q 036375          595 IELLDLSNNHFSGPIPQNISGSMPNLIFLSVSGNRLTGKIPGSIGEMQLLQVIDLSRNSISGSISSSIGNCTFLKVLDLS  674 (1009)
Q Consensus       595 L~~L~Ls~n~l~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls  674 (1009)
                      ++..+++.+.+. ..+...+..+++|++|++++|++++..|..|.++++|++|++++|++++..+  +..+++|++|+++
T Consensus        12 l~i~~ls~~~l~-~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~Ls   88 (317)
T 3o53_A           12 YKIEKVTDSSLK-QALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLN   88 (317)
T ss_dssp             EEEESCCTTTHH-HHHHHHHTTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE--ETTCTTCCEEECC
T ss_pred             eeEeeccccchh-hhHHHHhccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh--hhhcCCCCEEECc
Confidence            455566666664 4444566677788899999888888877888888889999999988887655  8888889999999


Q ss_pred             CCcCcccCCccccCCCCCCEEEccCccccCCCchhhcCCCCCCEEECcCCcccccCchhhhhcCcCCcEEEccCCccccc
Q 036375          675 YSSLSGVIPASLGQLTRLQSLHLNNNKLTGNLPSSFQNLTSLETLDLGNNRFSGNIPSLLGNGFVGLRILSLRSNAFSGE  754 (1009)
Q Consensus       675 ~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~ip~~l~~~l~~L~~L~L~~N~l~~~  754 (1009)
                      +|++++..     ..++|++|++++|++++..+.   .+++|++|++++|++++..|..+. .+++|+.|++++|.+++.
T Consensus        89 ~n~l~~l~-----~~~~L~~L~l~~n~l~~~~~~---~~~~L~~L~l~~N~l~~~~~~~~~-~l~~L~~L~Ls~N~l~~~  159 (317)
T 3o53_A           89 NNYVQELL-----VGPSIETLHAANNNISRVSCS---RGQGKKNIYLANNKITMLRDLDEG-CRSRVQYLDLKLNEIDTV  159 (317)
T ss_dssp             SSEEEEEE-----ECTTCCEEECCSSCCSEEEEC---CCSSCEEEECCSSCCCSGGGBCTG-GGSSEEEEECTTSCCCEE
T ss_pred             CCcccccc-----CCCCcCEEECCCCccCCcCcc---ccCCCCEEECCCCCCCCccchhhh-ccCCCCEEECCCCCCCcc
Confidence            98887543     337888899999888865544   357788889999888855554554 488888899998888877


Q ss_pred             CCcccC-CCCCCCEEEccCCcCCCCCChhhhhhhhhhhccchhhhhhccccccceeeceEEEeecCCCCCCCCceeEEEc
Q 036375          755 IPSKLS-NLSSLQVLDLAENNLTGSIPGSVGDLKAMAHVQNIVKYLLFGRYRGIYYEENLVINTKGSSKDTPRLFHFIDL  833 (1009)
Q Consensus       755 ~p~~l~-~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~L  833 (1009)
                      .+..+. .+++|++|++++|++++. |.. ..+++                                       ++.|+|
T Consensus       160 ~~~~~~~~l~~L~~L~L~~N~l~~~-~~~-~~l~~---------------------------------------L~~L~L  198 (317)
T 3o53_A          160 NFAELAASSDTLEHLNLQYNFIYDV-KGQ-VVFAK---------------------------------------LKTLDL  198 (317)
T ss_dssp             EGGGGGGGTTTCCEEECTTSCCCEE-ECC-CCCTT---------------------------------------CCEEEC
T ss_pred             cHHHHhhccCcCCEEECCCCcCccc-ccc-ccccc---------------------------------------CCEEEC
Confidence            776664 688899999999988754 211 11333                                       388899


Q ss_pred             cCCccCCCCCccccCcCCCCeEEccCCcccccCCCCccCCCCCCEEeCCCCcCC-CCCcccccCCCCCCeEeCC-CCcce
Q 036375          834 SGNNLHGDFPTQLTKLVGLVVLNLSRNHIGGQIPENISGLHQLASLDLSSNNLS-GGIPSSLSSLSFLGYINLS-RNQLS  911 (1009)
Q Consensus       834 s~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~-~~ip~~l~~l~~L~~L~ls-~N~l~  911 (1009)
                      ++|++++. |..+..+++|+.|+|++|++++ +|..+..+++|+.|++++|.++ +.+|..+..++.|++++++ .+.+.
T Consensus       199 s~N~l~~l-~~~~~~l~~L~~L~L~~N~l~~-l~~~~~~l~~L~~L~l~~N~~~~~~~~~~~~~~~~L~~l~l~~~~~l~  276 (317)
T 3o53_A          199 SSNKLAFM-GPEFQSAAGVTWISLRNNKLVL-IEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLT  276 (317)
T ss_dssp             CSSCCCEE-CGGGGGGTTCSEEECTTSCCCE-ECTTCCCCTTCCEEECTTCCCBHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred             CCCcCCcc-hhhhcccCcccEEECcCCcccc-hhhHhhcCCCCCEEEccCCCccCcCHHHHHhccccceEEECCCchhcc
Confidence            99998864 4458889999999999999984 6777888999999999999998 7888888889999999998 44577


Q ss_pred             ecCCC
Q 036375          912 GKIPF  916 (1009)
Q Consensus       912 g~ip~  916 (1009)
                      |..|.
T Consensus       277 ~~~~~  281 (317)
T 3o53_A          277 GQNEE  281 (317)
T ss_dssp             SSSSC
T ss_pred             CCchh
Confidence            77664

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=99.94  E-value=9.2e-28  Score=262.92  Aligned_cols=247  Identities=24%  Similarity=0.258  Sum_probs=191.4

Q ss_pred             CCccEEEccCCcCCCcCCchhhcCCCCccEEEccCCccc-ccCCcccc-------cCCCCCeEEccCCcCCccCcCcc--
Q 036375          593 VEIELLDLSNNHFSGPIPQNISGSMPNLIFLSVSGNRLT-GKIPGSIG-------EMQLLQVIDLSRNSISGSISSSI--  662 (1009)
Q Consensus       593 ~~L~~L~Ls~n~l~~~ip~~~~~~l~~L~~L~Ls~n~l~-~~~~~~~~-------~l~~L~~L~Ls~N~l~~~~p~~l--  662 (1009)
                      .+|+.+++++|.+  .+|..+...   |++|++++|+++ ..+|..+.       ++++|++|++++|++++.+|..+  
T Consensus        43 ~~L~~l~l~~n~l--~~p~~~~~~---L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~  117 (312)
T 1wwl_A           43 RSLEYLLKRVDTE--ADLGQFTDI---IKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLE  117 (312)
T ss_dssp             EECTTHHHHCCTT--CCCHHHHHH---HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCCSSS
T ss_pred             CCceeEeeccccc--ccHHHHHHH---HhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHHHHH
Confidence            4577777888887  677666543   888888888884 45555554       68888888888888888888776  


Q ss_pred             cCCCCCCEEECCCCcCcccCCccccCC-----CCCCEEEccCccccCCCchhhcCCCCCCEEECcCCcccccC--chhh-
Q 036375          663 GNCTFLKVLDLSYSSLSGVIPASLGQL-----TRLQSLHLNNNKLTGNLPSSFQNLTSLETLDLGNNRFSGNI--PSLL-  734 (1009)
Q Consensus       663 ~~l~~L~~L~Ls~N~l~~~~p~~~~~l-----~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~i--p~~l-  734 (1009)
                      ..+++|++|++++|++++. |..++.+     ++|++|++++|++++..|..|..+++|++|++++|++.+.+  |..+ 
T Consensus       118 ~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~  196 (312)
T 1wwl_A          118 ATGPDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALC  196 (312)
T ss_dssp             CCSCCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHHHSC
T ss_pred             hcCCCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHHHHHHH
Confidence            8888888888888888877 7777776     88888999888888877788888888999999888877653  3333 


Q ss_pred             hhcCcCCcEEEccCCcccc--cCC-cccCCCCCCCEEEccCCcCCCCCC-hhhhhhhhhhhccchhhhhhccccccceee
Q 036375          735 GNGFVGLRILSLRSNAFSG--EIP-SKLSNLSSLQVLDLAENNLTGSIP-GSVGDLKAMAHVQNIVKYLLFGRYRGIYYE  810 (1009)
Q Consensus       735 ~~~l~~L~~L~L~~N~l~~--~~p-~~l~~l~~L~~L~Ls~N~l~~~~p-~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~  810 (1009)
                      +..+++|+.|++++|++++  .++ ..+..+++|++|++++|++++.+| ..+..+++|                     
T Consensus       197 ~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L---------------------  255 (312)
T 1wwl_A          197 PLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQL---------------------  255 (312)
T ss_dssp             TTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCCTTC---------------------
T ss_pred             hccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhcCCC---------------------
Confidence            1358888999999988873  223 334577889999999999888765 233334444                     


Q ss_pred             ceEEEeecCCCCCCCCceeEEEccCCccCCCCCccccCcCCCCeEEccCCcccccCCCCccCCCCCCEEeCCCCcCCCC
Q 036375          811 ENLVINTKGSSKDTPRLFHFIDLSGNNLHGDFPTQLTKLVGLVVLNLSRNHIGGQIPENISGLHQLASLDLSSNNLSGG  889 (1009)
Q Consensus       811 ~~~~~~~~~~~~~~~~~l~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~  889 (1009)
                                        +.|+|++|+++ .+|..+.  ++|++|||++|++++. |. +..+++|++|++++|++++.
T Consensus       256 ------------------~~L~Ls~N~l~-~ip~~~~--~~L~~L~Ls~N~l~~~-p~-~~~l~~L~~L~L~~N~l~~~  311 (312)
T 1wwl_A          256 ------------------NSLNLSFTGLK-QVPKGLP--AKLSVLDLSYNRLDRN-PS-PDELPQVGNLSLKGNPFLDS  311 (312)
T ss_dssp             ------------------CEEECTTSCCS-SCCSSCC--SEEEEEECCSSCCCSC-CC-TTTSCEEEEEECTTCTTTCC
T ss_pred             ------------------CEEECCCCccC-hhhhhcc--CCceEEECCCCCCCCC-hh-HhhCCCCCEEeccCCCCCCC
Confidence                              88899999998 7777776  8899999999999977 55 88999999999999999864

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=99.93  E-value=8.6e-25  Score=258.50  Aligned_cols=241  Identities=29%  Similarity=0.322  Sum_probs=143.3

Q ss_pred             CccEEEccCCcCCCcCCchhhcCCCCccEEEccCCcccccCCcccccCCCCCeEEccCCcCCccCcCcccCCCCCCEEEC
Q 036375          594 EIELLDLSNNHFSGPIPQNISGSMPNLIFLSVSGNRLTGKIPGSIGEMQLLQVIDLSRNSISGSISSSIGNCTFLKVLDL  673 (1009)
Q Consensus       594 ~L~~L~Ls~n~l~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L  673 (1009)
                      +|+.|++++|.++ .+|.    .+++|++|++++|++++. |.   .+++|++|++++|++++. |.   .+++|+.|++
T Consensus        62 ~L~~L~L~~N~l~-~lp~----~l~~L~~L~Ls~N~l~~l-p~---~l~~L~~L~Ls~N~l~~l-~~---~l~~L~~L~L  128 (622)
T 3g06_A           62 HITTLVIPDNNLT-SLPA----LPPELRTLEVSGNQLTSL-PV---LPPGLLELSIFSNPLTHL-PA---LPSGLCKLWI  128 (622)
T ss_dssp             TCSEEEECSCCCS-CCCC----CCTTCCEEEECSCCCSCC-CC---CCTTCCEEEECSCCCCCC-CC---CCTTCCEEEC
T ss_pred             CCcEEEecCCCCC-CCCC----cCCCCCEEEcCCCcCCcC-CC---CCCCCCEEECcCCcCCCC-CC---CCCCcCEEEC
Confidence            4555555555554 3443    345566666666665532 22   455666666666666543 22   3456666666


Q ss_pred             CCCcCcccCCccccCCCCCCEEEccCccccCCCchhhcCCCCCCEEECcCCcccccCchhhhhcCcCCcEEEccCCcccc
Q 036375          674 SYSSLSGVIPASLGQLTRLQSLHLNNNKLTGNLPSSFQNLTSLETLDLGNNRFSGNIPSLLGNGFVGLRILSLRSNAFSG  753 (1009)
Q Consensus       674 s~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~ip~~l~~~l~~L~~L~L~~N~l~~  753 (1009)
                      ++|++++ +|..   +++|++|++++|++++ +|.   .+++|+.|++++|.++ .+|.    .+++|+.|++++|.+++
T Consensus       129 ~~N~l~~-lp~~---l~~L~~L~Ls~N~l~~-l~~---~~~~L~~L~L~~N~l~-~l~~----~~~~L~~L~Ls~N~l~~  195 (622)
T 3g06_A          129 FGNQLTS-LPVL---PPGLQELSVSDNQLAS-LPA---LPSELCKLWAYNNQLT-SLPM----LPSGLQELSVSDNQLAS  195 (622)
T ss_dssp             CSSCCSC-CCCC---CTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCS-CCCC----CCTTCCEEECCSSCCSC
T ss_pred             CCCCCCc-CCCC---CCCCCEEECcCCcCCC-cCC---ccCCCCEEECCCCCCC-CCcc----cCCCCcEEECCCCCCCC
Confidence            6666664 3332   3566666666666664 332   2355666666666666 4551    35666677777766663


Q ss_pred             cCCcccCCCCCCCEEEccCCcCCCCCChhhhhhhhhhhccchhhhhhccccccceeeceEEEeecCCCCCCCCceeEEEc
Q 036375          754 EIPSKLSNLSSLQVLDLAENNLTGSIPGSVGDLKAMAHVQNIVKYLLFGRYRGIYYEENLVINTKGSSKDTPRLFHFIDL  833 (1009)
Q Consensus       754 ~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~L  833 (1009)
                       +|..   .++|+.|++++|+++. +|..+   ++                                       ++.|+|
T Consensus       196 -l~~~---~~~L~~L~L~~N~l~~-l~~~~---~~---------------------------------------L~~L~L  228 (622)
T 3g06_A          196 -LPTL---PSELYKLWAYNNRLTS-LPALP---SG---------------------------------------LKELIV  228 (622)
T ss_dssp             -CCCC---CTTCCEEECCSSCCSS-CCCCC---TT---------------------------------------CCEEEC
T ss_pred             -CCCc---cchhhEEECcCCcccc-cCCCC---CC---------------------------------------CCEEEc
Confidence             3332   3566677777776663 33211   22                                       266777


Q ss_pred             cCCccCCCCCccccCcCCCCeEEccCCcccccCCCCccCCCCCCEEeCCCCcCCCCCcccccCCCCCCeEeCCCCcceec
Q 036375          834 SGNNLHGDFPTQLTKLVGLVVLNLSRNHIGGQIPENISGLHQLASLDLSSNNLSGGIPSSLSSLSFLGYINLSRNQLSGK  913 (1009)
Q Consensus       834 s~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~ls~N~l~g~  913 (1009)
                      ++|++++ +|   ..+++|+.|+|++|+|+. +|.   .+++|+.|+|++|+|+ .+|..+.++++|++|++++|+++|.
T Consensus       229 s~N~L~~-lp---~~l~~L~~L~Ls~N~L~~-lp~---~~~~L~~L~Ls~N~L~-~lp~~l~~l~~L~~L~L~~N~l~~~  299 (622)
T 3g06_A          229 SGNRLTS-LP---VLPSELKELMVSGNRLTS-LPM---LPSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSER  299 (622)
T ss_dssp             CSSCCSC-CC---CCCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCC-SCCGGGGGSCTTCEEECCSCCCCHH
T ss_pred             cCCccCc-CC---CCCCcCcEEECCCCCCCc-CCc---ccccCcEEeCCCCCCC-cCCHHHhhccccCEEEecCCCCCCc
Confidence            7777765 44   345667777777777774 443   4567777777777777 5677777777777777777777776


Q ss_pred             CCC
Q 036375          914 IPF  916 (1009)
Q Consensus       914 ip~  916 (1009)
                      +|.
T Consensus       300 ~~~  302 (622)
T 3g06_A          300 TLQ  302 (622)
T ss_dssp             HHH
T ss_pred             CHH
Confidence            654

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=99.93  E-value=1.9e-26  Score=253.14  Aligned_cols=243  Identities=23%  Similarity=0.205  Sum_probs=209.9

Q ss_pred             CccEEEccCCcccccCCcccccCCCCCeEEccCCcCCccCcCcccCCCCCCEEECCCCcCcccCCccccCCCCCCEEEcc
Q 036375          619 NLIFLSVSGNRLTGKIPGSIGEMQLLQVIDLSRNSISGSISSSIGNCTFLKVLDLSYSSLSGVIPASLGQLTRLQSLHLN  698 (1009)
Q Consensus       619 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~  698 (1009)
                      .++..+++.+.+.......+..+++|++|++++|++++..|..+..+++|++|++++|++++..+  +..+++|++|+++
T Consensus        11 ~l~i~~ls~~~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~Ls   88 (317)
T 3o53_A           11 RYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLN   88 (317)
T ss_dssp             EEEEESCCTTTHHHHHHHHHTTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE--ETTCTTCCEEECC
T ss_pred             ceeEeeccccchhhhHHHHhccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh--hhhcCCCCEEECc
Confidence            46667778887776666667778899999999999999888899999999999999999997765  8999999999999


Q ss_pred             CccccCCCchhhcCCCCCCEEECcCCcccccCchhhhhcCcCCcEEEccCCcccccCCcccCCCCCCCEEEccCCcCCCC
Q 036375          699 NNKLTGNLPSSFQNLTSLETLDLGNNRFSGNIPSLLGNGFVGLRILSLRSNAFSGEIPSKLSNLSSLQVLDLAENNLTGS  778 (1009)
Q Consensus       699 ~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~ip~~l~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~  778 (1009)
                      +|++++..     ..++|++|++++|.+++..+.    .+++|+.|++++|++++..+..+..+++|++|++++|++++.
T Consensus        89 ~n~l~~l~-----~~~~L~~L~l~~n~l~~~~~~----~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~  159 (317)
T 3o53_A           89 NNYVQELL-----VGPSIETLHAANNNISRVSCS----RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTV  159 (317)
T ss_dssp             SSEEEEEE-----ECTTCCEEECCSSCCSEEEEC----CCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEE
T ss_pred             CCcccccc-----CCCCcCEEECCCCccCCcCcc----ccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcc
Confidence            99998532     448999999999999855443    378999999999999988888899999999999999999988


Q ss_pred             CChhhh-hhhhhhhccchhhhhhccccccceeeceEEEeecCCCCCCCCceeEEEccCCccCCCCCccccCcCCCCeEEc
Q 036375          779 IPGSVG-DLKAMAHVQNIVKYLLFGRYRGIYYEENLVINTKGSSKDTPRLFHFIDLSGNNLHGDFPTQLTKLVGLVVLNL  857 (1009)
Q Consensus       779 ~p~~~~-~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L  857 (1009)
                      .|..+. .++.|                                       +.|+|++|.+++. | ....+++|++|+|
T Consensus       160 ~~~~~~~~l~~L---------------------------------------~~L~L~~N~l~~~-~-~~~~l~~L~~L~L  198 (317)
T 3o53_A          160 NFAELAASSDTL---------------------------------------EHLNLQYNFIYDV-K-GQVVFAKLKTLDL  198 (317)
T ss_dssp             EGGGGGGGTTTC---------------------------------------CEEECTTSCCCEE-E-CCCCCTTCCEEEC
T ss_pred             cHHHHhhccCcC---------------------------------------CEEECCCCcCccc-c-cccccccCCEEEC
Confidence            777663 56665                                       8999999999976 3 3345899999999


Q ss_pred             cCCcccccCCCCccCCCCCCEEeCCCCcCCCCCcccccCCCCCCeEeCCCCcce-ecCC
Q 036375          858 SRNHIGGQIPENISGLHQLASLDLSSNNLSGGIPSSLSSLSFLGYINLSRNQLS-GKIP  915 (1009)
Q Consensus       858 s~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~ls~N~l~-g~ip  915 (1009)
                      ++|++++.++ .+..+++|++|+|++|++++ +|..+..+++|++|++++|+++ +.+|
T Consensus       199 s~N~l~~l~~-~~~~l~~L~~L~L~~N~l~~-l~~~~~~l~~L~~L~l~~N~~~~~~~~  255 (317)
T 3o53_A          199 SSNKLAFMGP-EFQSAAGVTWISLRNNKLVL-IEKALRFSQNLEHFDLRGNGFHCGTLR  255 (317)
T ss_dssp             CSSCCCEECG-GGGGGTTCSEEECTTSCCCE-ECTTCCCCTTCCEEECTTCCCBHHHHH
T ss_pred             CCCcCCcchh-hhcccCcccEEECcCCcccc-hhhHhhcCCCCCEEEccCCCccCcCHH
Confidence            9999997655 59999999999999999994 7888999999999999999998 5544

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=99.93  E-value=3.3e-24  Score=253.55  Aligned_cols=269  Identities=27%  Similarity=0.354  Sum_probs=228.1

Q ss_pred             CcccEEEeccccccccCCCCCCCCCcCeEeccCCCCCCCCCCCCCCccEEEccCCcCCCcCCchhhcCCCCccEEEccCC
Q 036375          549 SKLSLLNVSLNQLQGQLPNPLNIAPFADVDFRSNLLEGPIPLPIVEIELLDLSNNHFSGPIPQNISGSMPNLIFLSVSGN  628 (1009)
Q Consensus       549 ~~L~~L~ls~n~l~~~~~~~~~~~~l~~l~l~~n~l~~~~~~~~~~L~~L~Ls~n~l~~~ip~~~~~~l~~L~~L~Ls~n  628 (1009)
                      ..++.+++++|.++ .+|..+. +.++.+++++|.++. +|..+++|++|++++|+++ .+|.    .+++|++|++++|
T Consensus        40 ~~l~~L~ls~n~L~-~lp~~l~-~~L~~L~L~~N~l~~-lp~~l~~L~~L~Ls~N~l~-~lp~----~l~~L~~L~Ls~N  111 (622)
T 3g06_A           40 NGNAVLNVGESGLT-TLPDCLP-AHITTLVIPDNNLTS-LPALPPELRTLEVSGNQLT-SLPV----LPPGLLELSIFSN  111 (622)
T ss_dssp             HCCCEEECCSSCCS-CCCSCCC-TTCSEEEECSCCCSC-CCCCCTTCCEEEECSCCCS-CCCC----CCTTCCEEEECSC
T ss_pred             CCCcEEEecCCCcC-ccChhhC-CCCcEEEecCCCCCC-CCCcCCCCCEEEcCCCcCC-cCCC----CCCCCCEEECcCC
Confidence            46899999999998 6676555 789999999999984 5667899999999999998 6775    6799999999999


Q ss_pred             cccccCCcccccCCCCCeEEccCCcCCccCcCcccCCCCCCEEECCCCcCcccCCccccCCCCCCEEEccCccccCCCch
Q 036375          629 RLTGKIPGSIGEMQLLQVIDLSRNSISGSISSSIGNCTFLKVLDLSYSSLSGVIPASLGQLTRLQSLHLNNNKLTGNLPS  708 (1009)
Q Consensus       629 ~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~  708 (1009)
                      ++++..+    .+++|+.|++++|++++ +|..   +++|++|++++|++++. |.   .+++|+.|++++|++++ +| 
T Consensus       112 ~l~~l~~----~l~~L~~L~L~~N~l~~-lp~~---l~~L~~L~Ls~N~l~~l-~~---~~~~L~~L~L~~N~l~~-l~-  177 (622)
T 3g06_A          112 PLTHLPA----LPSGLCKLWIFGNQLTS-LPVL---PPGLQELSVSDNQLASL-PA---LPSELCKLWAYNNQLTS-LP-  177 (622)
T ss_dssp             CCCCCCC----CCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCSCC-CC---CCTTCCEEECCSSCCSC-CC-
T ss_pred             cCCCCCC----CCCCcCEEECCCCCCCc-CCCC---CCCCCEEECcCCcCCCc-CC---ccCCCCEEECCCCCCCC-Cc-
Confidence            9997544    57899999999999986 4543   48999999999999964 43   34789999999999996 56 


Q ss_pred             hhcCCCCCCEEECcCCcccccCchhhhhcCcCCcEEEccCCcccccCCcccCCCCCCCEEEccCCcCCCCCChhhhhhhh
Q 036375          709 SFQNLTSLETLDLGNNRFSGNIPSLLGNGFVGLRILSLRSNAFSGEIPSKLSNLSSLQVLDLAENNLTGSIPGSVGDLKA  788 (1009)
Q Consensus       709 ~~~~l~~L~~L~L~~N~l~~~ip~~l~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~  788 (1009)
                        ..+++|+.|++++|.++ .+|..    +++|+.|++++|.++ .+|..   +++|+.|++++|++++ +|.   .+++
T Consensus       178 --~~~~~L~~L~Ls~N~l~-~l~~~----~~~L~~L~L~~N~l~-~l~~~---~~~L~~L~Ls~N~L~~-lp~---~l~~  242 (622)
T 3g06_A          178 --MLPSGLQELSVSDNQLA-SLPTL----PSELYKLWAYNNRLT-SLPAL---PSGLKELIVSGNRLTS-LPV---LPSE  242 (622)
T ss_dssp             --CCCTTCCEEECCSSCCS-CCCCC----CTTCCEEECCSSCCS-SCCCC---CTTCCEEECCSSCCSC-CCC---CCTT
T ss_pred             --ccCCCCcEEECCCCCCC-CCCCc----cchhhEEECcCCccc-ccCCC---CCCCCEEEccCCccCc-CCC---CCCc
Confidence              55789999999999998 57753    689999999999998 55643   5889999999999986 552   2233


Q ss_pred             hhhccchhhhhhccccccceeeceEEEeecCCCCCCCCceeEEEccCCccCCCCCccccCcCCCCeEEccCCcccccCCC
Q 036375          789 MAHVQNIVKYLLFGRYRGIYYEENLVINTKGSSKDTPRLFHFIDLSGNNLHGDFPTQLTKLVGLVVLNLSRNHIGGQIPE  868 (1009)
Q Consensus       789 L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~  868 (1009)
                      |                                       +.|+|++|+|++ +|.   .+++|+.|+|++|+|+ .+|.
T Consensus       243 L---------------------------------------~~L~Ls~N~L~~-lp~---~~~~L~~L~Ls~N~L~-~lp~  278 (622)
T 3g06_A          243 L---------------------------------------KELMVSGNRLTS-LPM---LPSGLLSLSVYRNQLT-RLPE  278 (622)
T ss_dssp             C---------------------------------------CEEECCSSCCSC-CCC---CCTTCCEEECCSSCCC-SCCG
T ss_pred             C---------------------------------------cEEECCCCCCCc-CCc---ccccCcEEeCCCCCCC-cCCH
Confidence            3                                       889999999994 665   6788999999999999 7788


Q ss_pred             CccCCCCCCEEeCCCCcCCCCCcccccCCC
Q 036375          869 NISGLHQLASLDLSSNNLSGGIPSSLSSLS  898 (1009)
Q Consensus       869 ~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~  898 (1009)
                      .+.++++|+.|+|++|.+++.+|..+..++
T Consensus       279 ~l~~l~~L~~L~L~~N~l~~~~~~~l~~L~  308 (622)
T 3g06_A          279 SLIHLSSETTVNLEGNPLSERTLQALREIT  308 (622)
T ss_dssp             GGGGSCTTCEEECCSCCCCHHHHHHHHHHH
T ss_pred             HHhhccccCEEEecCCCCCCcCHHHHHhcc
Confidence            999999999999999999999999887765

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.93  E-value=7.8e-26  Score=262.66  Aligned_cols=220  Identities=25%  Similarity=0.221  Sum_probs=146.2

Q ss_pred             CCCCeEEccCCcCCccCcCcccCCCCCCEEECCCCcCcccCCccccCCCCCCEEEccCccccCCCchhhcCCCCCCEEEC
Q 036375          642 QLLQVIDLSRNSISGSISSSIGNCTFLKVLDLSYSSLSGVIPASLGQLTRLQSLHLNNNKLTGNLPSSFQNLTSLETLDL  721 (1009)
Q Consensus       642 ~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L  721 (1009)
                      ++|++|++++|.+++..|..|..+++|++|+|++|.+++..|  +..+++|++|+|++|.+++..     ..++|++|++
T Consensus        34 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l~-----~~~~L~~L~L  106 (487)
T 3oja_A           34 WNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELL-----VGPSIETLHA  106 (487)
T ss_dssp             GGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSEEEEEE-----ECTTCCEEEC
T ss_pred             CCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCcCCCCC-----CCCCcCEEEC
Confidence            366677777777666666666667777777777777665544  666677777777777666432     2266777777


Q ss_pred             cCCcccccCchhhhhcCcCCcEEEccCCcccccCCcccCCCCCCCEEEccCCcCCCCCChhhh-hhhhhhhccchhhhhh
Q 036375          722 GNNRFSGNIPSLLGNGFVGLRILSLRSNAFSGEIPSKLSNLSSLQVLDLAENNLTGSIPGSVG-DLKAMAHVQNIVKYLL  800 (1009)
Q Consensus       722 ~~N~l~~~ip~~l~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~-~l~~L~~~~~~~~~~~  800 (1009)
                      ++|.+++..+.    .+++|+.|++++|.+++..|..+..+++|+.|++++|++++.+|..+. .++.|           
T Consensus       107 ~~N~l~~~~~~----~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L-----------  171 (487)
T 3oja_A          107 ANNNISRVSCS----RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTL-----------  171 (487)
T ss_dssp             CSSCCCCEEEC----CCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTC-----------
T ss_pred             cCCcCCCCCcc----ccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcc-----------
Confidence            77777644332    256677777777777766666677777777777777777776666654 45554           


Q ss_pred             ccccccceeeceEEEeecCCCCCCCCceeEEEccCCccCCCCCccccCcCCCCeEEccCCcccccCCCCccCCCCCCEEe
Q 036375          801 FGRYRGIYYEENLVINTKGSSKDTPRLFHFIDLSGNNLHGDFPTQLTKLVGLVVLNLSRNHIGGQIPENISGLHQLASLD  880 (1009)
Q Consensus       801 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~  880 (1009)
                                                  +.|+|++|.+++..+  +..+++|+.|+|++|++++.+|. +..+++|+.||
T Consensus       172 ----------------------------~~L~Ls~N~l~~~~~--~~~l~~L~~L~Ls~N~l~~~~~~-~~~l~~L~~L~  220 (487)
T 3oja_A          172 ----------------------------EHLNLQYNFIYDVKG--QVVFAKLKTLDLSSNKLAFMGPE-FQSAAGVTWIS  220 (487)
T ss_dssp             ----------------------------CEEECTTSCCCEEEC--CCCCTTCCEEECCSSCCCEECGG-GGGGTTCSEEE
T ss_pred             ----------------------------cEEecCCCccccccc--cccCCCCCEEECCCCCCCCCCHh-HcCCCCccEEE
Confidence                                        667777777776522  33467777777777777765443 77777777777


Q ss_pred             CCCCcCCCCCcccccCCCCCCeEeCCCCcce-ecCC
Q 036375          881 LSSNNLSGGIPSSLSSLSFLGYINLSRNQLS-GKIP  915 (1009)
Q Consensus       881 Ls~N~l~~~ip~~l~~l~~L~~L~ls~N~l~-g~ip  915 (1009)
                      |++|.+++ +|..+..+++|++|++++|++. +.+|
T Consensus       221 Ls~N~l~~-lp~~l~~l~~L~~L~l~~N~l~c~~~~  255 (487)
T 3oja_A          221 LRNNKLVL-IEKALRFSQNLEHFDLRGNGFHCGTLR  255 (487)
T ss_dssp             CTTSCCCE-ECTTCCCCTTCCEEECTTCCBCHHHHH
T ss_pred             ecCCcCcc-cchhhccCCCCCEEEcCCCCCcCcchH
Confidence            77777775 5666777777777777777776 4443

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.92  E-value=4.4e-26  Score=264.77  Aligned_cols=236  Identities=20%  Similarity=0.219  Sum_probs=181.3

Q ss_pred             CCCccEEEccCCcccccCCcccccCCCCCeEEccCCcCCccCcCcccCCCCCCEEECCCCcCcccCCccccCCCCCCEEE
Q 036375          617 MPNLIFLSVSGNRLTGKIPGSIGEMQLLQVIDLSRNSISGSISSSIGNCTFLKVLDLSYSSLSGVIPASLGQLTRLQSLH  696 (1009)
Q Consensus       617 l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~  696 (1009)
                      +++|++|++++|.+++..|..|..+++|++|++++|.+++..|  +..+++|++|++++|.+++..+     .++|+.|+
T Consensus        33 ~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l~~-----~~~L~~L~  105 (487)
T 3oja_A           33 AWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELLV-----GPSIETLH  105 (487)
T ss_dssp             GGGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSEEEEEEE-----CTTCCEEE
T ss_pred             CCCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCcCCCCCC-----CCCcCEEE
Confidence            3467777777777777777777777778888888887776655  7777788888888887775432     27788888


Q ss_pred             ccCccccCCCchhhcCCCCCCEEECcCCcccccCchhhhhcCcCCcEEEccCCcccccCCcccC-CCCCCCEEEccCCcC
Q 036375          697 LNNNKLTGNLPSSFQNLTSLETLDLGNNRFSGNIPSLLGNGFVGLRILSLRSNAFSGEIPSKLS-NLSSLQVLDLAENNL  775 (1009)
Q Consensus       697 L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~ip~~l~~~l~~L~~L~L~~N~l~~~~p~~l~-~l~~L~~L~Ls~N~l  775 (1009)
                      +++|.+++..+.   .+++|+.|++++|.+++..|..+. .+++|+.|++++|.+++.+|..+. .+++|+.|+|++|.+
T Consensus       106 L~~N~l~~~~~~---~l~~L~~L~L~~N~l~~~~~~~~~-~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l  181 (487)
T 3oja_A          106 AANNNISRVSCS---RGQGKKNIYLANNKITMLRDLDEG-CRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFI  181 (487)
T ss_dssp             CCSSCCCCEEEC---CCSSCEEEECCSSCCCSGGGBCGG-GGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCC
T ss_pred             CcCCcCCCCCcc---ccCCCCEEECCCCCCCCCCchhhc-CCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCcc
Confidence            888888765543   346788888888888766666655 378888888888888877777765 678888888888888


Q ss_pred             CCCCChhhhhhhhhhhccchhhhhhccccccceeeceEEEeecCCCCCCCCceeEEEccCCccCCCCCccccCcCCCCeE
Q 036375          776 TGSIPGSVGDLKAMAHVQNIVKYLLFGRYRGIYYEENLVINTKGSSKDTPRLFHFIDLSGNNLHGDFPTQLTKLVGLVVL  855 (1009)
Q Consensus       776 ~~~~p~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~Ls~N~l~~~~p~~l~~l~~L~~L  855 (1009)
                      ++..+..  .++.|                                       +.|||++|.+++..| .+..+++|+.|
T Consensus       182 ~~~~~~~--~l~~L---------------------------------------~~L~Ls~N~l~~~~~-~~~~l~~L~~L  219 (487)
T 3oja_A          182 YDVKGQV--VFAKL---------------------------------------KTLDLSSNKLAFMGP-EFQSAAGVTWI  219 (487)
T ss_dssp             CEEECCC--CCTTC---------------------------------------CEEECCSSCCCEECG-GGGGGTTCSEE
T ss_pred             ccccccc--cCCCC---------------------------------------CEEECCCCCCCCCCH-hHcCCCCccEE
Confidence            7652211  23333                                       788889998887544 48899999999


Q ss_pred             EccCCcccccCCCCccCCCCCCEEeCCCCcCC-CCCcccccCCCCCCeEeCC
Q 036375          856 NLSRNHIGGQIPENISGLHQLASLDLSSNNLS-GGIPSSLSSLSFLGYINLS  906 (1009)
Q Consensus       856 ~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~-~~ip~~l~~l~~L~~L~ls  906 (1009)
                      +|++|.+++ +|..++.+++|+.|++++|.+. +.+|..+..++.|+.++++
T Consensus       220 ~Ls~N~l~~-lp~~l~~l~~L~~L~l~~N~l~c~~~~~~~~~l~~L~~l~~~  270 (487)
T 3oja_A          220 SLRNNKLVL-IEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQ  270 (487)
T ss_dssp             ECTTSCCCE-ECTTCCCCTTCCEEECTTCCBCHHHHHHHHTTCHHHHHHHHH
T ss_pred             EecCCcCcc-cchhhccCCCCCEEEcCCCCCcCcchHHHHHhCCCCcEEecc
Confidence            999999996 6778999999999999999998 7788889999888888886

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=99.92  E-value=2.2e-24  Score=231.83  Aligned_cols=209  Identities=24%  Similarity=0.275  Sum_probs=122.8

Q ss_pred             CCCEEECCCCcCcccCCccccCCCCCCEEEccCccccCCCchhhcCCCCCCEEECcCCcccccCchhhhhcCcCCcEEEc
Q 036375          667 FLKVLDLSYSSLSGVIPASLGQLTRLQSLHLNNNKLTGNLPSSFQNLTSLETLDLGNNRFSGNIPSLLGNGFVGLRILSL  746 (1009)
Q Consensus       667 ~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~ip~~l~~~l~~L~~L~L  746 (1009)
                      +|++|++++|++++..+..|.++++|++|++++|++++..+..|..+++|++|++++|.+++..|..+. .+++|+.|++
T Consensus        29 ~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~-~l~~L~~L~l  107 (276)
T 2z62_A           29 STKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFS-GLSSLQKLVA  107 (276)
T ss_dssp             TCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTT-TCTTCCEEEC
T ss_pred             CccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhc-CCccccEEEC
Confidence            344444444444444443444444444444444444443334444444444444444444433333332 2445555555


Q ss_pred             cCCcccccCCcccCCCCCCCEEEccCCcCCCC-CChhhhhhhhhhhccchhhhhhccccccceeeceEEEeecCCCCCCC
Q 036375          747 RSNAFSGEIPSKLSNLSSLQVLDLAENNLTGS-IPGSVGDLKAMAHVQNIVKYLLFGRYRGIYYEENLVINTKGSSKDTP  825 (1009)
Q Consensus       747 ~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~-~p~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  825 (1009)
                      ++|.+.+..+..+..+++|++|++++|++++. +|..+.++++|                                    
T Consensus       108 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L------------------------------------  151 (276)
T 2z62_A          108 VETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNL------------------------------------  151 (276)
T ss_dssp             TTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTC------------------------------------
T ss_pred             CCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCC------------------------------------
Confidence            55555444444455555666666666665542 45555555544                                    


Q ss_pred             CceeEEEccCCccCCCCCccccCcCCCC----eEEccCCcccccCCCCccCCCCCCEEeCCCCcCCCCCcccccCCCCCC
Q 036375          826 RLFHFIDLSGNNLHGDFPTQLTKLVGLV----VLNLSRNHIGGQIPENISGLHQLASLDLSSNNLSGGIPSSLSSLSFLG  901 (1009)
Q Consensus       826 ~~l~~L~Ls~N~l~~~~p~~l~~l~~L~----~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~  901 (1009)
                         +.|+|++|++++..+..+..+++|+    .|++++|++++..+..+.. .+|++|++++|++++..+..++.+++|+
T Consensus       152 ---~~L~Ls~N~l~~~~~~~~~~l~~L~~l~l~L~ls~n~l~~~~~~~~~~-~~L~~L~L~~n~l~~~~~~~~~~l~~L~  227 (276)
T 2z62_A          152 ---EHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKE-IRLKELALDTNQLKSVPDGIFDRLTSLQ  227 (276)
T ss_dssp             ---CEEECCSSCCCEECGGGGHHHHTCTTCCEEEECCSSCCCEECTTSSCS-CCEEEEECCSSCCSCCCTTTTTTCCSCC
T ss_pred             ---CEEECCCCCCCcCCHHHhhhhhhccccceeeecCCCcccccCccccCC-CcccEEECCCCceeecCHhHhccccccc
Confidence               5566666666655555555555555    7888888888776665554 4788889998888877777788888899


Q ss_pred             eEeCCCCcceecCCC
Q 036375          902 YINLSRNQLSGKIPF  916 (1009)
Q Consensus       902 ~L~ls~N~l~g~ip~  916 (1009)
                      +|++++|++++..|.
T Consensus       228 ~L~l~~N~~~c~c~~  242 (276)
T 2z62_A          228 KIWLHTNPWDCSCPR  242 (276)
T ss_dssp             EEECCSSCBCCCTTT
T ss_pred             EEEccCCcccccCCc
Confidence            999999988887764

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=99.92  E-value=5.2e-27  Score=282.56  Aligned_cols=248  Identities=17%  Similarity=0.129  Sum_probs=115.1

Q ss_pred             hhhcCCCCccEEEcCCCcCCCCCCCCCCCCCCCCcEEECCCCCCCCCchhhhhcCCCCcEEEccCCcCcccCCcccC-CC
Q 036375          192 GILKNLPNLTELHLSVCGLTGSITSITPVNLTSPAVLDLSLNHFNSLFPNWLVNISTLVYVDLSDCDLYGRIPIGFG-EL  270 (1009)
Q Consensus       192 ~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~L~~n~~~~~~p~~l~-~l  270 (1009)
                      ..+..+++|++|+++++.......... ..         .+......++.....+++|++|++++|.+.+..+..+. .+
T Consensus        60 ~~~~~~~~L~~L~L~~~~~~~~~~l~~-~~---------~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~~~~~l~~~~  129 (594)
T 2p1m_B           60 TVIRRFPKVRSVELKGKPHFADFNLVP-DG---------WGGYVYPWIEAMSSSYTWLEEIRLKRMVVTDDCLELIAKSF  129 (594)
T ss_dssp             HHHHHCTTCCEEEEECSCGGGGGTCSC-TT---------SCCBCHHHHHHHHHHCTTCCEEEEESCBCCHHHHHHHHHHC
T ss_pred             HHHhhCCCceEEeccCCCchhhccccc-cc---------ccchhhHHHHHHHHhCCCCCeEEeeCcEEcHHHHHHHHHhC
Confidence            345677889999999875332111000 00         00000000111223455555666655555544444443 45


Q ss_pred             CCCCEEEcCCCCCCCCcccccccCCCCCccEEEcccccccccCCcccc----CCCCCCEEEccCCc--cccc-Cchhhhc
Q 036375          271 PNLQYLSLAGNNNLSGSCSQLFRGSWKKIQILNFASNKLHGKLPSSVA----NMTSLTNFDLFDKK--VEGG-IPSSIAR  343 (1009)
Q Consensus       271 ~~L~~L~L~~n~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~l~----~l~~L~~L~l~~n~--~~~~-~~~~l~~  343 (1009)
                      ++|++|++++|.......++.....+++|++|++++|.+.+..+.++.    .+++|++|++++|.  +... ++..+.+
T Consensus       130 ~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~  209 (594)
T 2p1m_B          130 KNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLASEVSFSALERLVTR  209 (594)
T ss_dssp             TTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTTCCCCCEEECTTCCSCCCHHHHHHHHHH
T ss_pred             CCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhcCCcCcEEEecccCCcCCHHHHHHHHHh
Confidence            555555555552111112233333455555555555554443333222    44566666666654  1111 1111233


Q ss_pred             ccCCCEEEcCCCcCCCCCCccccccccccCCCCCCCCCcEEECcCC-------cCcccCChhhcCCCCCCEE-eCcCCcc
Q 036375          344 LCYLKEFDLSGNNLTGSLPEILQGTDLCVSSNSPLPSLISMRLGNN-------HLKGKLPEWLSQLENLVEL-TLSYNLL  415 (1009)
Q Consensus       344 l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n-------~l~~~~~~~l~~l~~L~~L-~Ls~n~l  415 (1009)
                      +++|++|++++|...+.++..+.          .+++|++|+++.+       .+.+ ++..+.++++|+.| .+.+...
T Consensus       210 ~~~L~~L~L~~~~~~~~l~~~~~----------~~~~L~~L~l~~~~~~~~~~~~~~-l~~~l~~~~~L~~Ls~~~~~~~  278 (594)
T 2p1m_B          210 CPNLKSLKLNRAVPLEKLATLLQ----------RAPQLEELGTGGYTAEVRPDVYSG-LSVALSGCKELRCLSGFWDAVP  278 (594)
T ss_dssp             CTTCCEEECCTTSCHHHHHHHHH----------HCTTCSEEECSBCCCCCCHHHHHH-HHHHHHTCTTCCEEECCBTCCG
T ss_pred             CCCCcEEecCCCCcHHHHHHHHh----------cCCcceEcccccccCccchhhHHH-HHHHHhcCCCcccccCCcccch
Confidence            45566666655522222333333          3455555554333       2222 23356667777777 3333221


Q ss_pred             cccCCCCCCCCCCCcEEeCCCCcCCCCC-CcccCCCCCCCEEEccCc
Q 036375          416 QGPIPASLGNLKNLTKLNLPGNQLNGTL-PETLGSLPELSVLDVSSN  461 (1009)
Q Consensus       416 ~~~~p~~l~~l~~L~~L~L~~n~l~~~~-p~~l~~l~~L~~L~Ls~n  461 (1009)
                       +.++..+..+++|++|++++|.+++.. +..+..+++|++|++++|
T Consensus       279 -~~l~~~~~~~~~L~~L~L~~~~l~~~~l~~~~~~~~~L~~L~l~~~  324 (594)
T 2p1m_B          279 -AYLPAVYSVCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDY  324 (594)
T ss_dssp             -GGGGGGHHHHTTCCEEECTTCCCCHHHHHHHHTTCTTCCEEEEEGG
T ss_pred             -hhHHHHHHhhCCCCEEEccCCCCCHHHHHHHHhcCCCcCEEeCcCc
Confidence             223333345666777777766654321 122445666666666666

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=99.91  E-value=1e-23  Score=226.59  Aligned_cols=212  Identities=24%  Similarity=0.262  Sum_probs=142.6

Q ss_pred             CCCeEEccCCcCCccCcCcccCCCCCCEEECCCCcCcccCCccccCCCCCCEEEccCccccCCCchhhcCCCCCCEEECc
Q 036375          643 LLQVIDLSRNSISGSISSSIGNCTFLKVLDLSYSSLSGVIPASLGQLTRLQSLHLNNNKLTGNLPSSFQNLTSLETLDLG  722 (1009)
Q Consensus       643 ~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~  722 (1009)
                      +|++|++++|++++..+..|.++++|++|++++|++++..+..|..+++|++|++++|++++..+..|.++++|++|+++
T Consensus        29 ~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~  108 (276)
T 2z62_A           29 STKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAV  108 (276)
T ss_dssp             TCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECT
T ss_pred             CccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEECC
Confidence            34555555555554444455555555555555555554444455555555555555555555544555555555555555


Q ss_pred             CCcccccCchhhhhcCcCCcEEEccCCcccc-cCCcccCCCCCCCEEEccCCcCCCCCChhhhhhhhhhhccchhhhhhc
Q 036375          723 NNRFSGNIPSLLGNGFVGLRILSLRSNAFSG-EIPSKLSNLSSLQVLDLAENNLTGSIPGSVGDLKAMAHVQNIVKYLLF  801 (1009)
Q Consensus       723 ~N~l~~~ip~~l~~~l~~L~~L~L~~N~l~~-~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~~~~~~~~~~~  801 (1009)
                      +|.+.+..+..+. .+++|+.|++++|.+++ .+|..+..+++|++|++++|++++..+..+..++.++.+.        
T Consensus       109 ~n~l~~~~~~~~~-~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~l~--------  179 (276)
T 2z62_A          109 ETNLASLENFPIG-HLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLN--------  179 (276)
T ss_dssp             TSCCCCSTTCCCT-TCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCC--------
T ss_pred             CCCccccCchhcc-cCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcCCHHHhhhhhhccccc--------
Confidence            5555533222333 36666666666666664 3577788888888999999988887777888877763220        


Q ss_pred             cccccceeeceEEEeecCCCCCCCCceeEEEccCCccCCCCCccccCcCCCCeEEccCCcccccCCCCccCCCCCCEEeC
Q 036375          802 GRYRGIYYEENLVINTKGSSKDTPRLFHFIDLSGNNLHGDFPTQLTKLVGLVVLNLSRNHIGGQIPENISGLHQLASLDL  881 (1009)
Q Consensus       802 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L  881 (1009)
                                                 ..|++++|.+++..+..+.. .+|+.|+|++|++++.++..|.++++|+.|++
T Consensus       180 ---------------------------l~L~ls~n~l~~~~~~~~~~-~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l  231 (276)
T 2z62_A          180 ---------------------------LSLDLSLNPMNFIQPGAFKE-IRLKELALDTNQLKSVPDGIFDRLTSLQKIWL  231 (276)
T ss_dssp             ---------------------------EEEECCSSCCCEECTTSSCS-CCEEEEECCSSCCSCCCTTTTTTCCSCCEEEC
T ss_pred             ---------------------------eeeecCCCcccccCccccCC-CcccEEECCCCceeecCHhHhcccccccEEEc
Confidence                                       27899999999766665554 48999999999999888888999999999999


Q ss_pred             CCCcCCCCCc
Q 036375          882 SSNNLSGGIP  891 (1009)
Q Consensus       882 s~N~l~~~ip  891 (1009)
                      ++|.+++..|
T Consensus       232 ~~N~~~c~c~  241 (276)
T 2z62_A          232 HTNPWDCSCP  241 (276)
T ss_dssp             CSSCBCCCTT
T ss_pred             cCCcccccCC
Confidence            9999997543

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=99.91  E-value=1.8e-26  Score=277.95  Aligned_cols=135  Identities=17%  Similarity=0.132  Sum_probs=85.2

Q ss_pred             CCCCCeEEccCCcCCccCcCccc-CCCCCCEEECC--C----CcCccc-----CCccccCCCCCCEEEccCccccCCCch
Q 036375          641 MQLLQVIDLSRNSISGSISSSIG-NCTFLKVLDLS--Y----SSLSGV-----IPASLGQLTRLQSLHLNNNKLTGNLPS  708 (1009)
Q Consensus       641 l~~L~~L~Ls~N~l~~~~p~~l~-~l~~L~~L~Ls--~----N~l~~~-----~p~~~~~l~~L~~L~L~~N~l~~~~p~  708 (1009)
                      +++|+.|+++.|.+++..+..+. .+++|+.|+++  +    +.+++.     ++..+..+++|+.|++++ .+++..+.
T Consensus       371 ~~~L~~L~~~~~~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~l~~~~~~L~~L~L~~-~l~~~~~~  449 (594)
T 2p1m_B          371 CPKLESVLYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSG-LLTDKVFE  449 (594)
T ss_dssp             CTTCCEEEEEESCCCHHHHHHHHHHCTTCCEEEEEESSTTCCCTTTCCCTHHHHHHHHHHCTTCCEEECCS-SCCHHHHH
T ss_pred             chhHHHHHHhcCCcCHHHHHHHHhhCCCcceeEeecccCCCcccccCCchhhHHHHHHhhCCCccEEeecC-cccHHHHH
Confidence            56666666666666544443443 35666666666  2    344421     112245667788888866 55544444


Q ss_pred             hhcC-CCCCCEEECcCCcccccCchhhhhcCcCCcEEEccCCcccccCCc-ccCCCCCCCEEEccCCcCC
Q 036375          709 SFQN-LTSLETLDLGNNRFSGNIPSLLGNGFVGLRILSLRSNAFSGEIPS-KLSNLSSLQVLDLAENNLT  776 (1009)
Q Consensus       709 ~~~~-l~~L~~L~L~~N~l~~~ip~~l~~~l~~L~~L~L~~N~l~~~~p~-~l~~l~~L~~L~Ls~N~l~  776 (1009)
                      .+.. +++|++|+|++|.+++..+..+..++++|+.|++++|.+++.... ....+++|+.|++++|+++
T Consensus       450 ~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~~~~~  519 (594)
T 2p1m_B          450 YIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGDKALLANASKLETMRSLWMSSCSVS  519 (594)
T ss_dssp             HHHHHCTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCSCCHHHHHHTGGGGGGSSEEEEESSCCB
T ss_pred             HHHHhchhccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCCCcHHHHHHHHHhCCCCCEEeeeCCCCC
Confidence            4544 778888888888877665555544578888888888887654333 3445788888888888874

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=99.91  E-value=4.8e-23  Score=220.35  Aligned_cols=185  Identities=24%  Similarity=0.292  Sum_probs=123.1

Q ss_pred             CCCEEEccCccccCCCchhhcCCCCCCEEECcCCcccccCchhhhhcCcCCcEEEccCCcccccCCcccCCCCCCCEEEc
Q 036375          691 RLQSLHLNNNKLTGNLPSSFQNLTSLETLDLGNNRFSGNIPSLLGNGFVGLRILSLRSNAFSGEIPSKLSNLSSLQVLDL  770 (1009)
Q Consensus       691 ~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~ip~~l~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L  770 (1009)
                      ++++|++++|++++..+..|..+++|++|++++|.++ .+|...+..+++|+.|++++|++++..+..+..+++|++|++
T Consensus        38 ~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l  116 (270)
T 2o6q_A           38 DTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQ-TLPAGIFKELKNLETLWVTDNKLQALPIGVFDQLVNLAELRL  116 (270)
T ss_dssp             TCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCS-CCCTTTTSSCTTCCEEECCSSCCCCCCTTTTTTCSSCCEEEC
T ss_pred             CCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccC-eeChhhhcCCCCCCEEECCCCcCCcCCHhHcccccCCCEEEC
Confidence            3444444444444333334444444444444444444 333333333455555555555555444444556666666666


Q ss_pred             cCCcCCCCCChhhhhhhhhhhccchhhhhhccccccceeeceEEEeecCCCCCCCCceeEEEccCCccCCCCCccccCcC
Q 036375          771 AENNLTGSIPGSVGDLKAMAHVQNIVKYLLFGRYRGIYYEENLVINTKGSSKDTPRLFHFIDLSGNNLHGDFPTQLTKLV  850 (1009)
Q Consensus       771 s~N~l~~~~p~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~Ls~N~l~~~~p~~l~~l~  850 (1009)
                      ++|++++..|..+..+++|                                       +.|+|++|.+++..+..+..++
T Consensus       117 ~~n~l~~~~~~~~~~l~~L---------------------------------------~~L~Ls~n~l~~~~~~~~~~l~  157 (270)
T 2o6q_A          117 DRNQLKSLPPRVFDSLTKL---------------------------------------TYLSLGYNELQSLPKGVFDKLT  157 (270)
T ss_dssp             CSSCCCCCCTTTTTTCTTC---------------------------------------CEEECCSSCCCCCCTTTTTTCT
T ss_pred             CCCccCeeCHHHhCcCcCC---------------------------------------CEEECCCCcCCccCHhHccCCc
Confidence            6666666655556555555                                       6677777777766666678888


Q ss_pred             CCCeEEccCCcccccCCCCccCCCCCCEEeCCCCcCCCCCcccccCCCCCCeEeCCCCcceecCC
Q 036375          851 GLVVLNLSRNHIGGQIPENISGLHQLASLDLSSNNLSGGIPSSLSSLSFLGYINLSRNQLSGKIP  915 (1009)
Q Consensus       851 ~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~ls~N~l~g~ip  915 (1009)
                      +|+.|+|++|++++..+..|.++++|++|++++|++++..+..+..+++|++|++++|++.+..+
T Consensus       158 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~  222 (270)
T 2o6q_A          158 SLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQENPWDCTCN  222 (270)
T ss_dssp             TCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCSSS
T ss_pred             ccceeEecCCcCcEeChhHhccCCCcCEEECCCCcCCcCCHHHhccccCCCEEEecCCCeeCCCc
Confidence            89999999999988888888889999999999999998777778889999999999998876654

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=99.90  E-value=1.4e-23  Score=224.59  Aligned_cols=205  Identities=23%  Similarity=0.229  Sum_probs=144.4

Q ss_pred             ccCCCCCCEEECCCCcCcccCCccccCCCCCCEEEccCccccCCCchhhcCCCCCCEEECcCCcccccCchhhhhcCcCC
Q 036375          662 IGNCTFLKVLDLSYSSLSGVIPASLGQLTRLQSLHLNNNKLTGNLPSSFQNLTSLETLDLGNNRFSGNIPSLLGNGFVGL  741 (1009)
Q Consensus       662 l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~ip~~l~~~l~~L  741 (1009)
                      ...+++|+.|++++|.++..  ..+..+++|++|++++|.+++.  ..+..+++|++|++++|.+++..|..+. .+++|
T Consensus        37 ~~~l~~L~~L~l~~~~i~~~--~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~n~l~~~~~~~~~-~l~~L  111 (272)
T 3rfs_A           37 QNELNSIDQIIANNSDIKSV--QGIQYLPNVRYLALGGNKLHDI--SALKELTNLTYLILTGNQLQSLPNGVFD-KLTNL  111 (272)
T ss_dssp             HHHHTTCCEEECTTSCCCCC--TTGGGCTTCCEEECTTSCCCCC--GGGTTCTTCCEEECTTSCCCCCCTTTTT-TCTTC
T ss_pred             cccccceeeeeeCCCCcccc--cccccCCCCcEEECCCCCCCCc--hhhcCCCCCCEEECCCCccCccChhHhc-CCcCC
Confidence            33445555555555555422  2345555566666665555542  2455566666666666666533333233 36666


Q ss_pred             cEEEccCCcccccCCcccCCCCCCCEEEccCCcCCCCCChhhhhhhhhhhccchhhhhhccccccceeeceEEEeecCCC
Q 036375          742 RILSLRSNAFSGEIPSKLSNLSSLQVLDLAENNLTGSIPGSVGDLKAMAHVQNIVKYLLFGRYRGIYYEENLVINTKGSS  821 (1009)
Q Consensus       742 ~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  821 (1009)
                      +.|++++|++++..+..+..+++|++|++++|++++..|..++.+++|                                
T Consensus       112 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L--------------------------------  159 (272)
T 3rfs_A          112 KELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNL--------------------------------  159 (272)
T ss_dssp             CEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTC--------------------------------
T ss_pred             CEEECCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccC--------------------------------
Confidence            666666666665555566777777788888887776666666666666                                


Q ss_pred             CCCCCceeEEEccCCccCCCCCccccCcCCCCeEEccCCcccccCCCCccCCCCCCEEeCCCCcCCCCCcccccCCCCCC
Q 036375          822 KDTPRLFHFIDLSGNNLHGDFPTQLTKLVGLVVLNLSRNHIGGQIPENISGLHQLASLDLSSNNLSGGIPSSLSSLSFLG  901 (1009)
Q Consensus       822 ~~~~~~l~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~  901 (1009)
                             +.|+|++|++++..|..++.+++|++|++++|++++.+|..++.+++|+.|++++|.+.+..       +.|+
T Consensus       160 -------~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~-------~~l~  225 (272)
T 3rfs_A          160 -------TELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDCTC-------PGIR  225 (272)
T ss_dssp             -------CEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCT-------TTTH
T ss_pred             -------CEEECCCCCcCccCHHHhcCCccCCEEECCCCcCCccCHHHHhCCcCCCEEEccCCCccccC-------cHHH
Confidence                   77888888888777777888999999999999999988888999999999999999988654       4688


Q ss_pred             eEeCCCCcceecCCCC
Q 036375          902 YINLSRNQLSGKIPFE  917 (1009)
Q Consensus       902 ~L~ls~N~l~g~ip~~  917 (1009)
                      +++++.|+++|.+|..
T Consensus       226 ~l~~~~n~~~g~ip~~  241 (272)
T 3rfs_A          226 YLSEWINKHSGVVRNS  241 (272)
T ss_dssp             HHHHHHHHTGGGBBCT
T ss_pred             HHHHHHHhCCCcccCc
Confidence            9999999999999964

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=99.90  E-value=1.8e-24  Score=242.22  Aligned_cols=180  Identities=22%  Similarity=0.221  Sum_probs=107.4

Q ss_pred             EEEccCCcCCCcCCchhhcCCCCccEEEccCCcccccCC----cccccCC-CCCeEEccCCcCCccCcCcccCC-----C
Q 036375          597 LLDLSNNHFSGPIPQNISGSMPNLIFLSVSGNRLTGKIP----GSIGEMQ-LLQVIDLSRNSISGSISSSIGNC-----T  666 (1009)
Q Consensus       597 ~L~Ls~n~l~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~~----~~~~~l~-~L~~L~Ls~N~l~~~~p~~l~~l-----~  666 (1009)
                      .+++++|.++|.+|. +....++|++|++++|.+++..+    ..+..++ +|++|++++|++++..+..+..+     +
T Consensus         2 ~~~ls~n~~~~~~~~-~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~   80 (362)
T 3goz_A            2 NYKLTLHPGSNPVEE-FTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPA   80 (362)
T ss_dssp             EEECCCCTTCCHHHH-HHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCT
T ss_pred             ccccccccchHHHHH-HHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCC
Confidence            356777777776664 33445557777777777776665    5566666 67777777777776655555553     6


Q ss_pred             CCCEEECCCCcCcccCCcccc----CC-CCCCEEEccCccccCCCchhhc----C-CCCCCEEECcCCcccccCchhhhh
Q 036375          667 FLKVLDLSYSSLSGVIPASLG----QL-TRLQSLHLNNNKLTGNLPSSFQ----N-LTSLETLDLGNNRFSGNIPSLLGN  736 (1009)
Q Consensus       667 ~L~~L~Ls~N~l~~~~p~~~~----~l-~~L~~L~L~~N~l~~~~p~~~~----~-l~~L~~L~L~~N~l~~~ip~~l~~  736 (1009)
                      +|++|++++|++++..+..+.    .+ ++|++|++++|++++..+..+.    . .++|++|+|++|.+++..+..+..
T Consensus        81 ~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~  160 (362)
T 3goz_A           81 NVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQ  160 (362)
T ss_dssp             TCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHH
T ss_pred             CccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHH
Confidence            777777777777665554333    23 6677777777776655554432    2 246777777777666433332211


Q ss_pred             ---cCc-CCcEEEccCCcccccCCccc----CCC-CCCCEEEccCCcCCC
Q 036375          737 ---GFV-GLRILSLRSNAFSGEIPSKL----SNL-SSLQVLDLAENNLTG  777 (1009)
Q Consensus       737 ---~l~-~L~~L~L~~N~l~~~~p~~l----~~l-~~L~~L~Ls~N~l~~  777 (1009)
                         .++ +|+.|++++|++++..+..+    ..+ ++|++|||++|++++
T Consensus       161 ~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~  210 (362)
T 3goz_A          161 ILAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGL  210 (362)
T ss_dssp             HHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGG
T ss_pred             HHhcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCCh
Confidence               122 66666666666655444322    233 366666666666554

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=99.89  E-value=1.3e-22  Score=218.81  Aligned_cols=204  Identities=25%  Similarity=0.275  Sum_probs=134.5

Q ss_pred             cCCCCCCEEECCCCcCcccCCccccCCCCCCEEEccCccccCCCchhhcCCCCCCEEECcCCcccccCchhhhhcCcCCc
Q 036375          663 GNCTFLKVLDLSYSSLSGVIPASLGQLTRLQSLHLNNNKLTGNLPSSFQNLTSLETLDLGNNRFSGNIPSLLGNGFVGLR  742 (1009)
Q Consensus       663 ~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~ip~~l~~~l~~L~  742 (1009)
                      +++++++++++++|+++ .+|..+.  ++++.|++++|++++..+..|..+++|++|++++|.+++ +|..  ..+++|+
T Consensus         7 ~~l~~l~~l~~~~~~l~-~ip~~~~--~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~-~~~~--~~l~~L~   80 (290)
T 1p9a_G            7 SKVASHLEVNCDKRNLT-ALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTK-LQVD--GTLPVLG   80 (290)
T ss_dssp             ECSTTCCEEECTTSCCS-SCCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCE-EECC--SCCTTCC
T ss_pred             cccCCccEEECCCCCCC-cCCCCCC--CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCc-ccCC--CCCCcCC
Confidence            34444555555555444 2232222  345555555555554444555555555555555555552 2222  1356666


Q ss_pred             EEEccCCcccccCCcccCCCCCCCEEEccCCcCCCCCChhhhhhhhhhhccchhhhhhccccccceeeceEEEeecCCCC
Q 036375          743 ILSLRSNAFSGEIPSKLSNLSSLQVLDLAENNLTGSIPGSVGDLKAMAHVQNIVKYLLFGRYRGIYYEENLVINTKGSSK  822 (1009)
Q Consensus       743 ~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  822 (1009)
                      .|++++|+++ .+|..+..+++|++|++++|++++..|..|..+++|                                 
T Consensus        81 ~L~Ls~N~l~-~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L---------------------------------  126 (290)
T 1p9a_G           81 TLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGEL---------------------------------  126 (290)
T ss_dssp             EEECCSSCCS-SCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTC---------------------------------
T ss_pred             EEECCCCcCC-cCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCC---------------------------------
Confidence            6666666665 556666677777777777777776666666666665                                 


Q ss_pred             CCCCceeEEEccCCccCCCCCccccCcCCCCeEEccCCcccccCCCCccCCCCCCEEeCCCCcCCCCCcccccCCCCCCe
Q 036375          823 DTPRLFHFIDLSGNNLHGDFPTQLTKLVGLVVLNLSRNHIGGQIPENISGLHQLASLDLSSNNLSGGIPSSLSSLSFLGY  902 (1009)
Q Consensus       823 ~~~~~l~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~  902 (1009)
                            +.|+|++|++++..+..|..+++|+.|+|++|++++..+..|.++++|+.|+|++|+++ .+|..+..+..|++
T Consensus       127 ------~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~-~ip~~~~~~~~L~~  199 (290)
T 1p9a_G          127 ------QELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPF  199 (290)
T ss_dssp             ------CEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCCCSE
T ss_pred             ------CEEECCCCCCCccChhhcccccCCCEEECCCCcCCccCHHHhcCcCCCCEEECCCCcCC-ccChhhcccccCCe
Confidence                  67777777777777777788888888888888888777777788888888888888888 56777777788888


Q ss_pred             EeCCCCcceec
Q 036375          903 INLSRNQLSGK  913 (1009)
Q Consensus       903 L~ls~N~l~g~  913 (1009)
                      +++++|++...
T Consensus       200 l~L~~Np~~C~  210 (290)
T 1p9a_G          200 AFLHGNPWLCN  210 (290)
T ss_dssp             EECCSCCBCCS
T ss_pred             EEeCCCCccCc
Confidence            88888887653

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=99.89  E-value=1.7e-23  Score=224.13  Aligned_cols=226  Identities=22%  Similarity=0.241  Sum_probs=166.8

Q ss_pred             ccEEEccCCcccccCCcccccCCCCCeEEccCCcCCccCcCcccCCCCCCEEECCCCcCcccCCccccCCCCCCEEEccC
Q 036375          620 LIFLSVSGNRLTGKIPGSIGEMQLLQVIDLSRNSISGSISSSIGNCTFLKVLDLSYSSLSGVIPASLGQLTRLQSLHLNN  699 (1009)
Q Consensus       620 L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~  699 (1009)
                      +..+++..+.+....  ....+++|+.|++++|.+...  ..+..+++|++|++++|++++.  ..+..+++|++|++++
T Consensus        21 l~~l~l~~~~~~~~~--~~~~l~~L~~L~l~~~~i~~~--~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~   94 (272)
T 3rfs_A           21 TIKANLKKKSVTDAV--TQNELNSIDQIIANNSDIKSV--QGIQYLPNVRYLALGGNKLHDI--SALKELTNLTYLILTG   94 (272)
T ss_dssp             HHHHHHTCSCTTSEE--CHHHHTTCCEEECTTSCCCCC--TTGGGCTTCCEEECTTSCCCCC--GGGTTCTTCCEEECTT
T ss_pred             HHHHHhcCccccccc--ccccccceeeeeeCCCCcccc--cccccCCCCcEEECCCCCCCCc--hhhcCCCCCCEEECCC
Confidence            334444444444332  244566777777777776632  3467777777777777777753  3567777778888887


Q ss_pred             ccccCCCchhhcCCCCCCEEECcCCcccccCchhhhhcCcCCcEEEccCCcccccCCcccCCCCCCCEEEccCCcCCCCC
Q 036375          700 NKLTGNLPSSFQNLTSLETLDLGNNRFSGNIPSLLGNGFVGLRILSLRSNAFSGEIPSKLSNLSSLQVLDLAENNLTGSI  779 (1009)
Q Consensus       700 N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~ip~~l~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~  779 (1009)
                      |.+++..+..|..+++|++|++++|.+++..|..+. .+++|+.|++++|++++..+..+..+++|+.|++++|++++..
T Consensus        95 n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~-~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~  173 (272)
T 3rfs_A           95 NQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFD-KLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLP  173 (272)
T ss_dssp             SCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTT-TCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCC
T ss_pred             CccCccChhHhcCCcCCCEEECCCCcCCccCHHHhc-cCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCccC
Confidence            777776666677777888888888877744443333 4778888888888887666666788888888888888888777


Q ss_pred             ChhhhhhhhhhhccchhhhhhccccccceeeceEEEeecCCCCCCCCceeEEEccCCccCCCCCccccCcCCCCeEEccC
Q 036375          780 PGSVGDLKAMAHVQNIVKYLLFGRYRGIYYEENLVINTKGSSKDTPRLFHFIDLSGNNLHGDFPTQLTKLVGLVVLNLSR  859 (1009)
Q Consensus       780 p~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~  859 (1009)
                      |..++.+++|                                       +.|+|++|++++..|..++.+++|+.|++++
T Consensus       174 ~~~~~~l~~L---------------------------------------~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~  214 (272)
T 3rfs_A          174 EGVFDKLTQL---------------------------------------KDLRLYQNQLKSVPDGVFDRLTSLQYIWLHD  214 (272)
T ss_dssp             TTTTTTCTTC---------------------------------------CEEECCSSCCSCCCTTTTTTCTTCCEEECCS
T ss_pred             HHHhcCCccC---------------------------------------CEEECCCCcCCccCHHHHhCCcCCCEEEccC
Confidence            7667777766                                       7888888888888888889999999999999


Q ss_pred             CcccccCCCCccCCCCCCEEeCCCCcCCCCCcccccCCC
Q 036375          860 NHIGGQIPENISGLHQLASLDLSSNNLSGGIPSSLSSLS  898 (1009)
Q Consensus       860 N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~  898 (1009)
                      |.+.+..       ++|+.|+++.|.++|.+|.+++.+.
T Consensus       215 N~~~~~~-------~~l~~l~~~~n~~~g~ip~~~~~~~  246 (272)
T 3rfs_A          215 NPWDCTC-------PGIRYLSEWINKHSGVVRNSAGSVA  246 (272)
T ss_dssp             SCBCCCT-------TTTHHHHHHHHHTGGGBBCTTSCBC
T ss_pred             CCccccC-------cHHHHHHHHHHhCCCcccCcccccC
Confidence            9888654       4688999999999999999887665

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=99.89  E-value=3e-22  Score=214.12  Aligned_cols=204  Identities=27%  Similarity=0.327  Sum_probs=148.2

Q ss_pred             CCeEEccCCcCCccCcCcccCCCCCCEEECCCCcCcccCCccccCCCCCCEEEccCccccCCCchhhcCCCCCCEEECcC
Q 036375          644 LQVIDLSRNSISGSISSSIGNCTFLKVLDLSYSSLSGVIPASLGQLTRLQSLHLNNNKLTGNLPSSFQNLTSLETLDLGN  723 (1009)
Q Consensus       644 L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~  723 (1009)
                      .+.+++++++++. +|..+.  +++++|++++|++++..+..|..+++|++|++++|++++..+..|..+++|++|++++
T Consensus        18 ~~~l~~~~~~l~~-ip~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~   94 (270)
T 2o6q_A           18 KNSVDCSSKKLTA-IPSNIP--ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTD   94 (270)
T ss_dssp             TTEEECTTSCCSS-CCSCCC--TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECCS
T ss_pred             CCEEEccCCCCCc-cCCCCC--CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECCC
Confidence            4556666666653 343332  4566666666666655555666666677777777666655455556677777777777


Q ss_pred             CcccccCchhhhhcCcCCcEEEccCCcccccCCcccCCCCCCCEEEccCCcCCCCCChhhhhhhhhhhccchhhhhhccc
Q 036375          724 NRFSGNIPSLLGNGFVGLRILSLRSNAFSGEIPSKLSNLSSLQVLDLAENNLTGSIPGSVGDLKAMAHVQNIVKYLLFGR  803 (1009)
Q Consensus       724 N~l~~~ip~~l~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~~~~~~~~~~~~~  803 (1009)
                      |.++ .+|...+..+++|+.|++++|++++..+..+..+++|++|++++|++++..+..+..+++|              
T Consensus        95 n~l~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L--------------  159 (270)
T 2o6q_A           95 NKLQ-ALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSL--------------  159 (270)
T ss_dssp             SCCC-CCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTC--------------
T ss_pred             CcCC-cCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCccCHhHccCCccc--------------
Confidence            7766 3444333347777777777777776666667788888888888888887666666666666              


Q ss_pred             cccceeeceEEEeecCCCCCCCCceeEEEccCCccCCCCCccccCcCCCCeEEccCCcccccCCCCccCCCCCCEEeCCC
Q 036375          804 YRGIYYEENLVINTKGSSKDTPRLFHFIDLSGNNLHGDFPTQLTKLVGLVVLNLSRNHIGGQIPENISGLHQLASLDLSS  883 (1009)
Q Consensus       804 ~~~~~~~~~~~~~~~~~~~~~~~~l~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~  883 (1009)
                                               +.|+|++|++++..+..|.++++|++|+|++|++++..+..|..+++|+.|+|++
T Consensus       160 -------------------------~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~  214 (270)
T 2o6q_A          160 -------------------------KELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQE  214 (270)
T ss_dssp             -------------------------CEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCS
T ss_pred             -------------------------ceeEecCCcCcEeChhHhccCCCcCEEECCCCcCCcCCHHHhccccCCCEEEecC
Confidence                                     7888888888887777889999999999999999988888899999999999999


Q ss_pred             CcCCCCC
Q 036375          884 NNLSGGI  890 (1009)
Q Consensus       884 N~l~~~i  890 (1009)
                      |.+...-
T Consensus       215 N~~~c~c  221 (270)
T 2o6q_A          215 NPWDCTC  221 (270)
T ss_dssp             SCBCCSS
T ss_pred             CCeeCCC
Confidence            9987643

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=99.89  E-value=1.4e-24  Score=245.63  Aligned_cols=243  Identities=19%  Similarity=0.250  Sum_probs=155.9

Q ss_pred             CCcccccCCCCCeEEccCCcCCccCc----CcccCCCCCCEEECCCC---cCcccCCccc-------cCCCCCCEEEccC
Q 036375          634 IPGSIGEMQLLQVIDLSRNSISGSIS----SSIGNCTFLKVLDLSYS---SLSGVIPASL-------GQLTRLQSLHLNN  699 (1009)
Q Consensus       634 ~~~~~~~l~~L~~L~Ls~N~l~~~~p----~~l~~l~~L~~L~Ls~N---~l~~~~p~~~-------~~l~~L~~L~L~~  699 (1009)
                      ++..+..+++|++|++++|.+++..+    ..+..+++|++|+|++|   ++++.+|..+       ..+++|++|+|++
T Consensus        24 l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~  103 (386)
T 2ca6_A           24 VFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSD  103 (386)
T ss_dssp             TSHHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCS
T ss_pred             HHHHHhcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCC
Confidence            33445555666666666666654422    23556666666666664   3334444433       5667777777777


Q ss_pred             ccccC----CCchhhcCCCCCCEEECcCCcccccCchhhhhc---C---------cCCcEEEccCCccc-ccCC---ccc
Q 036375          700 NKLTG----NLPSSFQNLTSLETLDLGNNRFSGNIPSLLGNG---F---------VGLRILSLRSNAFS-GEIP---SKL  759 (1009)
Q Consensus       700 N~l~~----~~p~~~~~l~~L~~L~L~~N~l~~~ip~~l~~~---l---------~~L~~L~L~~N~l~-~~~p---~~l  759 (1009)
                      |.+++    .+|..+..+++|++|+|++|.+++..+..+...   +         ++|+.|++++|+++ +.+|   ..+
T Consensus       104 n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l  183 (386)
T 2ca6_A          104 NAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTF  183 (386)
T ss_dssp             CCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHH
T ss_pred             CcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHHH
Confidence            77765    355566677777777777777654333333221   2         67777777777776 3334   345


Q ss_pred             CCCCCCCEEEccCCcCCC-----CCChhhhhhhhhhhccchhhhhhccccccceeeceEEEeecCCCCCCCCceeEEEcc
Q 036375          760 SNLSSLQVLDLAENNLTG-----SIPGSVGDLKAMAHVQNIVKYLLFGRYRGIYYEENLVINTKGSSKDTPRLFHFIDLS  834 (1009)
Q Consensus       760 ~~l~~L~~L~Ls~N~l~~-----~~p~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~Ls  834 (1009)
                      ..+++|++|++++|+++.     .+|..+..+++|                                       +.|+|+
T Consensus       184 ~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L---------------------------------------~~L~Ls  224 (386)
T 2ca6_A          184 QSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQEL---------------------------------------KVLDLQ  224 (386)
T ss_dssp             HHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTC---------------------------------------CEEECC
T ss_pred             HhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCc---------------------------------------cEEECc
Confidence            567777777777777762     222234444433                                       677777


Q ss_pred             CCccC----CCCCccccCcCCCCeEEccCCccccc----CCCCcc--CCCCCCEEeCCCCcCCC----CCcccc-cCCCC
Q 036375          835 GNNLH----GDFPTQLTKLVGLVVLNLSRNHIGGQ----IPENIS--GLHQLASLDLSSNNLSG----GIPSSL-SSLSF  899 (1009)
Q Consensus       835 ~N~l~----~~~p~~l~~l~~L~~L~Ls~N~l~~~----~p~~l~--~l~~L~~L~Ls~N~l~~----~ip~~l-~~l~~  899 (1009)
                      +|.++    +.+|..+..+++|+.|+|++|.+++.    +|..+.  .+++|++|+|++|.+++    .+|..+ .++++
T Consensus       225 ~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~  304 (386)
T 2ca6_A          225 DNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPD  304 (386)
T ss_dssp             SSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTT
T ss_pred             CCCCCcHHHHHHHHHHccCCCcCEEECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCC
Confidence            77775    56677778888888888888888765    555553  37888888888888887    477776 56788


Q ss_pred             CCeEeCCCCcceecCC
Q 036375          900 LGYINLSRNQLSGKIP  915 (1009)
Q Consensus       900 L~~L~ls~N~l~g~ip  915 (1009)
                      |++|++++|++++..|
T Consensus       305 L~~L~l~~N~l~~~~~  320 (386)
T 2ca6_A          305 LLFLELNGNRFSEEDD  320 (386)
T ss_dssp             CCEEECTTSBSCTTSH
T ss_pred             ceEEEccCCcCCcchh
Confidence            8888888888877654

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=99.88  E-value=7e-24  Score=237.34  Aligned_cols=257  Identities=19%  Similarity=0.204  Sum_probs=177.2

Q ss_pred             EEEccCCcccccCCcccccCCCCCeEEccCCcCCccCc----CcccCCC-CCCEEECCCCcCcccCCccccCC-----CC
Q 036375          622 FLSVSGNRLTGKIPGSIGEMQLLQVIDLSRNSISGSIS----SSIGNCT-FLKVLDLSYSSLSGVIPASLGQL-----TR  691 (1009)
Q Consensus       622 ~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p----~~l~~l~-~L~~L~Ls~N~l~~~~p~~~~~l-----~~  691 (1009)
                      +++++.|.+++.+|..+...++|++|++++|.+++..+    ..+..++ +|++|++++|++++..+..+..+     ++
T Consensus         2 ~~~ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~   81 (362)
T 3goz_A            2 NYKLTLHPGSNPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPAN   81 (362)
T ss_dssp             EEECCCCTTCCHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTT
T ss_pred             ccccccccchHHHHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCC
Confidence            45677788887777766666678888888888876666    6677777 78888888888887766666654     78


Q ss_pred             CCEEEccCccccCCCchhh----cCC-CCCCEEECcCCcccccCchhhhhc----CcCCcEEEccCCcccccC----Ccc
Q 036375          692 LQSLHLNNNKLTGNLPSSF----QNL-TSLETLDLGNNRFSGNIPSLLGNG----FVGLRILSLRSNAFSGEI----PSK  758 (1009)
Q Consensus       692 L~~L~L~~N~l~~~~p~~~----~~l-~~L~~L~L~~N~l~~~ip~~l~~~----l~~L~~L~L~~N~l~~~~----p~~  758 (1009)
                      |++|++++|++++..+..+    ..+ ++|++|++++|.+++..+..+...    .++|+.|++++|.+++..    +..
T Consensus        82 L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~  161 (362)
T 3goz_A           82 VTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQI  161 (362)
T ss_dssp             CCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHH
T ss_pred             ccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHH
Confidence            8888888888876666543    334 788888888888876555544322    357888888888887533    333


Q ss_pred             cCCCC-CCCEEEccCCcCCCCCChhhhhh-hhhhhccchhhhhhccccccceeeceEEEeecCCCCCCCCceeEEEccCC
Q 036375          759 LSNLS-SLQVLDLAENNLTGSIPGSVGDL-KAMAHVQNIVKYLLFGRYRGIYYEENLVINTKGSSKDTPRLFHFIDLSGN  836 (1009)
Q Consensus       759 l~~l~-~L~~L~Ls~N~l~~~~p~~~~~l-~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~Ls~N  836 (1009)
                      +..++ +|++|++++|++++..+..+... ...                                   +..++.|||++|
T Consensus       162 l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~-----------------------------------~~~L~~L~Ls~N  206 (362)
T 3goz_A          162 LAAIPANVNSLNLRGNNLASKNCAELAKFLASI-----------------------------------PASVTSLDLSAN  206 (362)
T ss_dssp             HHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTS-----------------------------------CTTCCEEECTTS
T ss_pred             HhcCCccccEeeecCCCCchhhHHHHHHHHHhC-----------------------------------CCCCCEEECCCC
Confidence            44554 78888888888877766655543 111                                   012377888888


Q ss_pred             ccCCC----CCccccC-cCCCCeEEccCCcccccCC----CCccCCCCCCEEeCCCCcCCCCCc-------ccccCCCCC
Q 036375          837 NLHGD----FPTQLTK-LVGLVVLNLSRNHIGGQIP----ENISGLHQLASLDLSSNNLSGGIP-------SSLSSLSFL  900 (1009)
Q Consensus       837 ~l~~~----~p~~l~~-l~~L~~L~Ls~N~l~~~~p----~~l~~l~~L~~L~Ls~N~l~~~ip-------~~l~~l~~L  900 (1009)
                      .+++.    ++..+.. .++|++|+|++|.+++..+    ..+..+++|++|+|++|.+.+..+       ..+..+++|
T Consensus       207 ~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L  286 (362)
T 3goz_A          207 LLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKI  286 (362)
T ss_dssp             CGGGSCHHHHHHHHHHSCTTCCEEECCSSCCCCCCHHHHHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEE
T ss_pred             CCChhHHHHHHHHHhcCCCCceEEECcCCCCCcHHHHHHHHHHhcCCCccEEEeccCCccccCHHHHHHHHHHhccCCce
Confidence            88764    4445555 3478888888888876544    345667788888888888554433       356677778


Q ss_pred             CeEeCCCCcceec
Q 036375          901 GYINLSRNQLSGK  913 (1009)
Q Consensus       901 ~~L~ls~N~l~g~  913 (1009)
                      ++||+++|++.+.
T Consensus       287 ~~LdL~~N~l~~~  299 (362)
T 3goz_A          287 ILVDKNGKEIHPS  299 (362)
T ss_dssp             EEECTTSCBCCGG
T ss_pred             EEEecCCCcCCCc
Confidence            8888888887655

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=99.88  E-value=8.3e-22  Score=212.44  Aligned_cols=204  Identities=25%  Similarity=0.264  Sum_probs=150.2

Q ss_pred             cccCCCCCeEEccCCcCCccCcCcccCCCCCCEEECCCCcCcccCCccccCCCCCCEEEccCccccCCCchhhcCCCCCC
Q 036375          638 IGEMQLLQVIDLSRNSISGSISSSIGNCTFLKVLDLSYSSLSGVIPASLGQLTRLQSLHLNNNKLTGNLPSSFQNLTSLE  717 (1009)
Q Consensus       638 ~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~  717 (1009)
                      +.++++++++++++|.++. +|..+.  +.++.|++++|++++..|..|..+++|++|++++|.+++..+  ...+++|+
T Consensus         6 ~~~l~~l~~l~~~~~~l~~-ip~~~~--~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~   80 (290)
T 1p9a_G            6 VSKVASHLEVNCDKRNLTA-LPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQV--DGTLPVLG   80 (290)
T ss_dssp             EECSTTCCEEECTTSCCSS-CCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEEC--CSCCTTCC
T ss_pred             ccccCCccEEECCCCCCCc-CCCCCC--CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccC--CCCCCcCC
Confidence            3445566666666666653 333332  466677777777766666666677777777777777664322  25667777


Q ss_pred             EEECcCCcccccCchhhhhcCcCCcEEEccCCcccccCCcccCCCCCCCEEEccCCcCCCCCChhhhhhhhhhhccchhh
Q 036375          718 TLDLGNNRFSGNIPSLLGNGFVGLRILSLRSNAFSGEIPSKLSNLSSLQVLDLAENNLTGSIPGSVGDLKAMAHVQNIVK  797 (1009)
Q Consensus       718 ~L~L~~N~l~~~ip~~l~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~~~~~~~  797 (1009)
                      +|++++|.++ .+|..+. .+++|+.|++++|++++..|..|..+++|++|++++|++++..+..|..+++|        
T Consensus        81 ~L~Ls~N~l~-~l~~~~~-~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L--------  150 (290)
T 1p9a_G           81 TLDLSHNQLQ-SLPLLGQ-TLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKL--------  150 (290)
T ss_dssp             EEECCSSCCS-SCCCCTT-TCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTC--------
T ss_pred             EEECCCCcCC-cCchhhc-cCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCC--------
Confidence            7777777776 6666554 47778888888888876666778888888888888888887766667776666        


Q ss_pred             hhhccccccceeeceEEEeecCCCCCCCCceeEEEccCCccCCCCCccccCcCCCCeEEccCCcccccCCCCccCCCCCC
Q 036375          798 YLLFGRYRGIYYEENLVINTKGSSKDTPRLFHFIDLSGNNLHGDFPTQLTKLVGLVVLNLSRNHIGGQIPENISGLHQLA  877 (1009)
Q Consensus       798 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~  877 (1009)
                                                     +.|+|++|++++..+..+.++++|+.|+|++|+++ .+|..+..+.+|+
T Consensus       151 -------------------------------~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~-~ip~~~~~~~~L~  198 (290)
T 1p9a_G          151 -------------------------------EKLSLANNNLTELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLP  198 (290)
T ss_dssp             -------------------------------CEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCCCS
T ss_pred             -------------------------------CEEECCCCcCCccCHHHhcCcCCCCEEECCCCcCC-ccChhhcccccCC
Confidence                                           78888888888777777888999999999999999 6777788888999


Q ss_pred             EEeCCCCcCCC
Q 036375          878 SLDLSSNNLSG  888 (1009)
Q Consensus       878 ~L~Ls~N~l~~  888 (1009)
                      .|+|++|.+..
T Consensus       199 ~l~L~~Np~~C  209 (290)
T 1p9a_G          199 FAFLHGNPWLC  209 (290)
T ss_dssp             EEECCSCCBCC
T ss_pred             eEEeCCCCccC
Confidence            99999999875

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=99.87  E-value=3.1e-23  Score=230.16  Aligned_cols=249  Identities=21%  Similarity=0.254  Sum_probs=163.7

Q ss_pred             ccEEEccCCcccccCCcccccC--CCCCeEEccCCcCCccCcCcccCCCCCCEEECCCCcCccc-CCccccCCCCCCEEE
Q 036375          620 LIFLSVSGNRLTGKIPGSIGEM--QLLQVIDLSRNSISGSISSSIGNCTFLKVLDLSYSSLSGV-IPASLGQLTRLQSLH  696 (1009)
Q Consensus       620 L~~L~Ls~n~l~~~~~~~~~~l--~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~-~p~~~~~l~~L~~L~  696 (1009)
                      ++.++++++.+.   +..+..+  +.++.|++++|.+.+..+. +..+++|++|++++|.+++. +|..+..+++|++|+
T Consensus        49 ~~~l~l~~~~~~---~~~~~~~~~~~l~~L~l~~n~l~~~~~~-~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~  124 (336)
T 2ast_B           49 WQTLDLTGKNLH---PDVTGRLLSQGVIAFRCPRSFMDQPLAE-HFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLS  124 (336)
T ss_dssp             SSEEECTTCBCC---HHHHHHHHHTTCSEEECTTCEECSCCCS-CCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEE
T ss_pred             heeeccccccCC---HHHHHhhhhccceEEEcCCccccccchh-hccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEe
Confidence            444444444443   2233444  5566666666666655443 34566666777766666654 555666667777777


Q ss_pred             ccCccccCCCchhhcCCCCCCEEECcCC-ccccc-CchhhhhcCcCCcEEEccCC-ccccc-CCcccCCCC-CCCEEEcc
Q 036375          697 LNNNKLTGNLPSSFQNLTSLETLDLGNN-RFSGN-IPSLLGNGFVGLRILSLRSN-AFSGE-IPSKLSNLS-SLQVLDLA  771 (1009)
Q Consensus       697 L~~N~l~~~~p~~~~~l~~L~~L~L~~N-~l~~~-ip~~l~~~l~~L~~L~L~~N-~l~~~-~p~~l~~l~-~L~~L~Ls  771 (1009)
                      +++|.+++..+..+..+++|++|++++| .+++. +|..+. .+++|+.|++++| .+++. ++..+..++ +|++|+++
T Consensus       125 L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~-~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~  203 (336)
T 2ast_B          125 LEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLS-SCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLS  203 (336)
T ss_dssp             CTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHH-HCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECC
T ss_pred             CcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHh-cCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeC
Confidence            7777666666666666777777777777 45542 444444 3777777777777 66643 455566677 77888887


Q ss_pred             CC--cCC-CCCChhhhhhhhhhhccchhhhhhccccccceeeceEEEeecCCCCCCCCceeEEEccCCc-cCCCCCcccc
Q 036375          772 EN--NLT-GSIPGSVGDLKAMAHVQNIVKYLLFGRYRGIYYEENLVINTKGSSKDTPRLFHFIDLSGNN-LHGDFPTQLT  847 (1009)
Q Consensus       772 ~N--~l~-~~~p~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~Ls~N~-l~~~~p~~l~  847 (1009)
                      +|  .++ +.+|..+.++++|                                       +.|++++|. +++..+..+.
T Consensus       204 ~~~~~~~~~~l~~~~~~~~~L---------------------------------------~~L~l~~~~~l~~~~~~~l~  244 (336)
T 2ast_B          204 GYRKNLQKSDLSTLVRRCPNL---------------------------------------VHLDLSDSVMLKNDCFQEFF  244 (336)
T ss_dssp             SCGGGSCHHHHHHHHHHCTTC---------------------------------------SEEECTTCTTCCGGGGGGGG
T ss_pred             CCcccCCHHHHHHHHhhCCCC---------------------------------------CEEeCCCCCcCCHHHHHHHh
Confidence            77  454 4455555555555                                       778888888 7777778888


Q ss_pred             CcCCCCeEEccCCc-ccccCCCCccCCCCCCEEeCCCCcCCCCCcccccCC-CCCCeEeCCCCcceecCCC
Q 036375          848 KLVGLVVLNLSRNH-IGGQIPENISGLHQLASLDLSSNNLSGGIPSSLSSL-SFLGYINLSRNQLSGKIPF  916 (1009)
Q Consensus       848 ~l~~L~~L~Ls~N~-l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l-~~L~~L~ls~N~l~g~ip~  916 (1009)
                      ++++|++|++++|. +.......++++++|+.|++++| ++.   ..+..+ ..+..|++++|+++|..|.
T Consensus       245 ~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~-i~~---~~~~~l~~~l~~L~l~~n~l~~~~~~  311 (336)
T 2ast_B          245 QLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI-VPD---GTLQLLKEALPHLQINCSHFTTIARP  311 (336)
T ss_dssp             GCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS-SCT---TCHHHHHHHSTTSEESCCCSCCTTCS
T ss_pred             CCCCCCEeeCCCCCCCCHHHHHHHhcCCCCCEEeccCc-cCH---HHHHHHHhhCcceEEecccCccccCC
Confidence            88999999999985 33322236788999999999998 433   234444 3477788999999998885

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=99.87  E-value=1.4e-22  Score=221.56  Aligned_cols=224  Identities=21%  Similarity=0.212  Sum_probs=136.8

Q ss_pred             CccEEEccCCcccccCCc---ccccCCCCCeEEccCCcCCccCcCcc--cCCCCCCEEECCCCcCcccCC----ccccCC
Q 036375          619 NLIFLSVSGNRLTGKIPG---SIGEMQLLQVIDLSRNSISGSISSSI--GNCTFLKVLDLSYSSLSGVIP----ASLGQL  689 (1009)
Q Consensus       619 ~L~~L~Ls~n~l~~~~~~---~~~~l~~L~~L~Ls~N~l~~~~p~~l--~~l~~L~~L~Ls~N~l~~~~p----~~~~~l  689 (1009)
                      .++.+.+.++.++...-.   .+..+++|++|++++|++.+..|..+  ..+++|++|++++|++++..+    ..+..+
T Consensus        65 ~l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~  144 (310)
T 4glp_A           65 RVRRLTVGAAQVPAQLLVGALRVLAYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLK  144 (310)
T ss_dssp             CCCEEEECSCCCBHHHHHHHHHHHHHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBC
T ss_pred             ceeEEEEeCCcCCHHHHHHHHHhcccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhc
Confidence            355555555554321100   11123445555555555555555544  455555555555555554333    122334


Q ss_pred             CCCCEEEccCccccCCCchhhcCCCCCCEEECcCCcccccCchhhhhcCcCCcEEEccCCccccc--C--CcccCCCCCC
Q 036375          690 TRLQSLHLNNNKLTGNLPSSFQNLTSLETLDLGNNRFSGNIPSLLGNGFVGLRILSLRSNAFSGE--I--PSKLSNLSSL  765 (1009)
Q Consensus       690 ~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~ip~~l~~~l~~L~~L~L~~N~l~~~--~--p~~l~~l~~L  765 (1009)
                      ++|++|++++|++++..|..|..+                         ++|++|++++|++.+.  +  +..+..+++|
T Consensus       145 ~~L~~L~Ls~n~l~~~~~~~~~~l-------------------------~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L  199 (310)
T 4glp_A          145 PGLKVLSIAQAHSPAFSCEQVRAF-------------------------PALTSLDLSDNPGLGERGLMAALCPHKFPAI  199 (310)
T ss_dssp             SCCCEEEEECCSSCCCCTTSCCCC-------------------------TTCCEEECCSCTTCHHHHHHTTSCTTSSCCC
T ss_pred             cCCCEEEeeCCCcchhhHHHhccC-------------------------CCCCEEECCCCCCccchhhhHHHhhhcCCCC
Confidence            445555555555444444444444                         4555555555544331  1  2234567788


Q ss_pred             CEEEccCCcCCCCCChh----hhhhhhhhhccchhhhhhccccccceeeceEEEeecCCCCCCCCceeEEEccCCccCCC
Q 036375          766 QVLDLAENNLTGSIPGS----VGDLKAMAHVQNIVKYLLFGRYRGIYYEENLVINTKGSSKDTPRLFHFIDLSGNNLHGD  841 (1009)
Q Consensus       766 ~~L~Ls~N~l~~~~p~~----~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~Ls~N~l~~~  841 (1009)
                      ++|++++|+++. +|..    ++++++|                                       +.|||++|++++.
T Consensus       200 ~~L~Ls~N~l~~-l~~~~~~l~~~l~~L---------------------------------------~~L~Ls~N~l~~~  239 (310)
T 4glp_A          200 QNLALRNTGMET-PTGVCAALAAAGVQP---------------------------------------HSLDLSHNSLRAT  239 (310)
T ss_dssp             CSCBCCSSCCCC-HHHHHHHHHHHTCCC---------------------------------------SSEECTTSCCCCC
T ss_pred             CEEECCCCCCCc-hHHHHHHHHhcCCCC---------------------------------------CEEECCCCCCCcc
Confidence            888888888863 2221    2344444                                       7788899998888


Q ss_pred             CCccccCc---CCCCeEEccCCcccccCCCCccCCCCCCEEeCCCCcCCCCCcccccCCCCCCeEeCCCCccee
Q 036375          842 FPTQLTKL---VGLVVLNLSRNHIGGQIPENISGLHQLASLDLSSNNLSGGIPSSLSSLSFLGYINLSRNQLSG  912 (1009)
Q Consensus       842 ~p~~l~~l---~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~ls~N~l~g  912 (1009)
                      +|..+..+   ++|++|+|++|+++ .+|..+.  ++|++|||++|++++. |. +..+++|++|++++|+++.
T Consensus       240 ~p~~~~~~~~~~~L~~L~Ls~N~l~-~lp~~~~--~~L~~L~Ls~N~l~~~-~~-~~~l~~L~~L~L~~N~l~~  308 (310)
T 4glp_A          240 VNPSAPRCMWSSALNSLNLSFAGLE-QVPKGLP--AKLRVLDLSSNRLNRA-PQ-PDELPEVDNLTLDGNPFLV  308 (310)
T ss_dssp             CCSCCSSCCCCTTCCCEECCSSCCC-SCCSCCC--SCCSCEECCSCCCCSC-CC-TTSCCCCSCEECSSTTTSC
T ss_pred             chhhHHhccCcCcCCEEECCCCCCC-chhhhhc--CCCCEEECCCCcCCCC-ch-hhhCCCccEEECcCCCCCC
Confidence            88887777   59999999999999 6677665  7999999999999974 33 6788999999999998864

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=99.87  E-value=7.7e-22  Score=208.48  Aligned_cols=212  Identities=25%  Similarity=0.270  Sum_probs=130.5

Q ss_pred             CCCEEECCCCcCcccCCccccCCCCCCEEEccCccccCCCchhhcCCCCCCEEECcCCcccccCchhhhhcCcCCcEEEc
Q 036375          667 FLKVLDLSYSSLSGVIPASLGQLTRLQSLHLNNNKLTGNLPSSFQNLTSLETLDLGNNRFSGNIPSLLGNGFVGLRILSL  746 (1009)
Q Consensus       667 ~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~ip~~l~~~l~~L~~L~L  746 (1009)
                      ..++++++++.++ .+|..+.  ++++.|++++|++++..+..|..+++|++|+|++|.++                   
T Consensus        15 ~~~~l~~~~~~l~-~~p~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-------------------   72 (251)
T 3m19_A           15 GKKEVDCQGKSLD-SVPSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQ-------------------   72 (251)
T ss_dssp             GGTEEECTTCCCS-SCCSCCC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCC-------------------
T ss_pred             CCeEEecCCCCcc-ccCCCCC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCC-------------------
Confidence            4556666666666 3444333  45666666666666555555555555555555555555                   


Q ss_pred             cCCcccccCCcccCCCCCCCEEEccCCcCCCCCChhhhhhhhhhhccchhhhhhccccccceeeceEEEeecCCCCCCCC
Q 036375          747 RSNAFSGEIPSKLSNLSSLQVLDLAENNLTGSIPGSVGDLKAMAHVQNIVKYLLFGRYRGIYYEENLVINTKGSSKDTPR  826 (1009)
Q Consensus       747 ~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  826 (1009)
                            +..|..+..+++|++|++++|++++..|..+..+++|                                     
T Consensus        73 ------~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L-------------------------------------  109 (251)
T 3m19_A           73 ------TLSAGVFDDLTELGTLGLANNQLASLPLGVFDHLTQL-------------------------------------  109 (251)
T ss_dssp             ------CCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTC-------------------------------------
T ss_pred             ------ccCHhHhccCCcCCEEECCCCcccccChhHhcccCCC-------------------------------------
Confidence                  3444445555556666666666655555555555444                                     


Q ss_pred             ceeEEEccCCccCCCCCccccCcCCCCeEEccCCcccccCCCCccCCCCCCEEeCCCCcCCCCCcccccCCCCCCeEeCC
Q 036375          827 LFHFIDLSGNNLHGDFPTQLTKLVGLVVLNLSRNHIGGQIPENISGLHQLASLDLSSNNLSGGIPSSLSSLSFLGYINLS  906 (1009)
Q Consensus       827 ~l~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~ls  906 (1009)
                        +.|+|++|++++..+..+..+++|++|+|++|++++.++..|+.+++|++|+|++|++++..|..+..+++|++|+++
T Consensus       110 --~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~  187 (251)
T 3m19_A          110 --DKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLF  187 (251)
T ss_dssp             --CEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECC
T ss_pred             --CEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCCccCHHHHhCCCCCCEEEee
Confidence              566666666666666667778888888888888887777788888888888888888888777788888888888888


Q ss_pred             CCcceecCCCCCCCCc------ccCCcCCCCCCCCCCCCCCCCCCC
Q 036375          907 RNQLSGKIPFEGHMTT------FDASSFAGNPGLCGDPLPVKCQDD  946 (1009)
Q Consensus       907 ~N~l~g~ip~~~~~~~------~~~~~~~~n~~lc~~~~~~~c~~~  946 (1009)
                      +|++++..+....+..      .......|+ .+|+.|....|..+
T Consensus       188 ~N~~~c~~~~~~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~C~~~  232 (251)
T 3m19_A          188 GNQFDCSRCEILYLSQWIRENSNKVKDGTGQ-NLHESPDGVTCSDG  232 (251)
T ss_dssp             SCCBCTTSTTHHHHHHHHHHSGGGBCC--------CCGGGCBBTTS
T ss_pred             CCceeCCccccHHHHHHHHhcccceeeccCc-ccccCCCcCccCCC
Confidence            8888776432111110      111122344 46666666778655

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=99.87  E-value=1e-22  Score=222.59  Aligned_cols=183  Identities=19%  Similarity=0.186  Sum_probs=139.8

Q ss_pred             CCccEEEccCCcCCCcCCchh--hcCCCCccEEEccCCcccccCCccc--ccCCCCCeEEccCCcCCccCc----CcccC
Q 036375          593 VEIELLDLSNNHFSGPIPQNI--SGSMPNLIFLSVSGNRLTGKIPGSI--GEMQLLQVIDLSRNSISGSIS----SSIGN  664 (1009)
Q Consensus       593 ~~L~~L~Ls~n~l~~~ip~~~--~~~l~~L~~L~Ls~n~l~~~~~~~~--~~l~~L~~L~Ls~N~l~~~~p----~~l~~  664 (1009)
                      ..++.+.+.++.++...-..+  ...+++|++|++++|.+++..|..+  ..+++|++|++++|++++..+    ..+..
T Consensus        64 ~~l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~  143 (310)
T 4glp_A           64 LRVRRLTVGAAQVPAQLLVGALRVLAYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWL  143 (310)
T ss_dssp             CCCCEEEECSCCCBHHHHHHHHHHHHHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTB
T ss_pred             cceeEEEEeCCcCCHHHHHHHHHhcccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhh
Confidence            457888998887753211111  1134679999999999999999888  899999999999999997655    34567


Q ss_pred             CCCCCEEECCCCcCcccCCccccCCCCCCEEEccCccccCC--C--chhhcCCCCCCEEECcCCcccccCchh---hhhc
Q 036375          665 CTFLKVLDLSYSSLSGVIPASLGQLTRLQSLHLNNNKLTGN--L--PSSFQNLTSLETLDLGNNRFSGNIPSL---LGNG  737 (1009)
Q Consensus       665 l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~--~--p~~~~~l~~L~~L~L~~N~l~~~ip~~---l~~~  737 (1009)
                      +++|++|++++|++++..|..|+.+++|++|++++|++.+.  +  +..+..+++|++|++++|.++ .+|..   +...
T Consensus       144 ~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~l~~~~~~l~~~  222 (310)
T 4glp_A          144 KPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGME-TPTGVCAALAAA  222 (310)
T ss_dssp             CSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCC-CHHHHHHHHHHH
T ss_pred             ccCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCC-chHHHHHHHHhc
Confidence            99999999999999999899999999999999999998753  2  223468899999999999996 44432   3334


Q ss_pred             CcCCcEEEccCCcccccCCcccCCC---CCCCEEEccCCcCC
Q 036375          738 FVGLRILSLRSNAFSGEIPSKLSNL---SSLQVLDLAENNLT  776 (1009)
Q Consensus       738 l~~L~~L~L~~N~l~~~~p~~l~~l---~~L~~L~Ls~N~l~  776 (1009)
                      +++|+.|++++|++++..|..+..+   ++|++|++++|+++
T Consensus       223 l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~  264 (310)
T 4glp_A          223 GVQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLE  264 (310)
T ss_dssp             TCCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCC
T ss_pred             CCCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCC
Confidence            6777777777777776666666555   46666666666655

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=99.87  E-value=8.1e-23  Score=226.76  Aligned_cols=254  Identities=17%  Similarity=0.230  Sum_probs=206.3

Q ss_pred             CccEEEccCCcCCCcCCchhhcCC--CCccEEEccCCcccccCCcccccCCCCCeEEccCCcCCcc-CcCcccCCCCCCE
Q 036375          594 EIELLDLSNNHFSGPIPQNISGSM--PNLIFLSVSGNRLTGKIPGSIGEMQLLQVIDLSRNSISGS-ISSSIGNCTFLKV  670 (1009)
Q Consensus       594 ~L~~L~Ls~n~l~~~ip~~~~~~l--~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~-~p~~l~~l~~L~~  670 (1009)
                      .++.++++++.+.    ...+..+  ++++.|++++|.+.+..+. +..+++|++|++++|.+++. ++..+..+++|++
T Consensus        48 ~~~~l~l~~~~~~----~~~~~~~~~~~l~~L~l~~n~l~~~~~~-~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~  122 (336)
T 2ast_B           48 LWQTLDLTGKNLH----PDVTGRLLSQGVIAFRCPRSFMDQPLAE-HFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQN  122 (336)
T ss_dssp             TSSEEECTTCBCC----HHHHHHHHHTTCSEEECTTCEECSCCCS-CCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSE
T ss_pred             hheeeccccccCC----HHHHHhhhhccceEEEcCCccccccchh-hccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCE
Confidence            4678888888775    2344445  7899999999999987766 45689999999999998866 7788899999999


Q ss_pred             EECCCCcCcccCCccccCCCCCCEEEccCc-cccCC-CchhhcCCCCCCEEECcCC-ccccc-CchhhhhcCc-CCcEEE
Q 036375          671 LDLSYSSLSGVIPASLGQLTRLQSLHLNNN-KLTGN-LPSSFQNLTSLETLDLGNN-RFSGN-IPSLLGNGFV-GLRILS  745 (1009)
Q Consensus       671 L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N-~l~~~-~p~~~~~l~~L~~L~L~~N-~l~~~-ip~~l~~~l~-~L~~L~  745 (1009)
                      |++++|++++..+..++.+++|++|++++| .+++. ++..+..+++|++|++++| .+++. ++..+. .++ +|+.|+
T Consensus       123 L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~-~l~~~L~~L~  201 (336)
T 2ast_B          123 LSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVA-HVSETITQLN  201 (336)
T ss_dssp             EECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHH-HSCTTCCEEE
T ss_pred             EeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHH-hcccCCCEEE
Confidence            999999999888888999999999999999 67753 6777889999999999999 88764 566565 488 999999


Q ss_pred             ccCC--ccc-ccCCcccCCCCCCCEEEccCCc-CCCCCChhhhhhhhhhhccchhhhhhccccccceeeceEEEeecCCC
Q 036375          746 LRSN--AFS-GEIPSKLSNLSSLQVLDLAENN-LTGSIPGSVGDLKAMAHVQNIVKYLLFGRYRGIYYEENLVINTKGSS  821 (1009)
Q Consensus       746 L~~N--~l~-~~~p~~l~~l~~L~~L~Ls~N~-l~~~~p~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  821 (1009)
                      +++|  .++ +.+|..+..+++|++|++++|. +++..+..+.++++|                                
T Consensus       202 l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L--------------------------------  249 (336)
T 2ast_B          202 LSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYL--------------------------------  249 (336)
T ss_dssp             CCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTC--------------------------------
T ss_pred             eCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCC--------------------------------
Confidence            9999  455 4667778889999999999999 777777777777666                                


Q ss_pred             CCCCCceeEEEccCCc-cCCCCCccccCcCCCCeEEccCCcccccCCCCccCCC-CCCEEeCCCCcCCCCCcccccC
Q 036375          822 KDTPRLFHFIDLSGNN-LHGDFPTQLTKLVGLVVLNLSRNHIGGQIPENISGLH-QLASLDLSSNNLSGGIPSSLSS  896 (1009)
Q Consensus       822 ~~~~~~l~~L~Ls~N~-l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~-~L~~L~Ls~N~l~~~ip~~l~~  896 (1009)
                             +.|++++|. ++......++++++|+.|++++| ++   .+.+..+. .++.|++++|++++..|..++.
T Consensus       250 -------~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~-i~---~~~~~~l~~~l~~L~l~~n~l~~~~~~~~~~  315 (336)
T 2ast_B          250 -------QHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI-VP---DGTLQLLKEALPHLQINCSHFTTIARPTIGN  315 (336)
T ss_dssp             -------CEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS-SC---TTCHHHHHHHSTTSEESCCCSCCTTCSSCSS
T ss_pred             -------CEeeCCCCCCCCHHHHHHHhcCCCCCEEeccCc-cC---HHHHHHHHhhCcceEEecccCccccCCcccc
Confidence                   889999995 33332336889999999999999 33   23455553 4888889999999999988765

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=99.86  E-value=6.9e-22  Score=207.31  Aligned_cols=196  Identities=17%  Similarity=0.212  Sum_probs=101.4

Q ss_pred             CCCEEECCCCcCcccCCccccCCCCCCEEEccCcc-ccCCCchhhcCCCCCCEEECcC-CcccccCchhhhhcCcCCcEE
Q 036375          667 FLKVLDLSYSSLSGVIPASLGQLTRLQSLHLNNNK-LTGNLPSSFQNLTSLETLDLGN-NRFSGNIPSLLGNGFVGLRIL  744 (1009)
Q Consensus       667 ~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~-l~~~~p~~~~~l~~L~~L~L~~-N~l~~~ip~~l~~~l~~L~~L  744 (1009)
                      +|++|++++|++++..+..|..+++|++|++++|+ +++..+..|.++++|++|++++ |.++ .+|...+..+++|+.|
T Consensus        32 ~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~-~i~~~~f~~l~~L~~L  110 (239)
T 2xwt_C           32 STQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLT-YIDPDALKELPLLKFL  110 (239)
T ss_dssp             TCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCC-EECTTSEECCTTCCEE
T ss_pred             cccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCee-EcCHHHhCCCCCCCEE
Confidence            34444444444444333344444444444444443 4433333444444444444444 4444 2222211234444444


Q ss_pred             EccCCcccccCCcccCCCCCCC---EEEccCC-cCCCCCChhhhhhhhhhhccchhhhhhccccccceeeceEEEeecCC
Q 036375          745 SLRSNAFSGEIPSKLSNLSSLQ---VLDLAEN-NLTGSIPGSVGDLKAMAHVQNIVKYLLFGRYRGIYYEENLVINTKGS  820 (1009)
Q Consensus       745 ~L~~N~l~~~~p~~l~~l~~L~---~L~Ls~N-~l~~~~p~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  820 (1009)
                      ++++|++++ +|. +..+++|+   +|++++| ++++..+..|.+++.|                               
T Consensus       111 ~l~~n~l~~-lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L-------------------------------  157 (239)
T 2xwt_C          111 GIFNTGLKM-FPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNE-------------------------------  157 (239)
T ss_dssp             EEEEECCCS-CCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSS-------------------------------
T ss_pred             eCCCCCCcc-ccc-cccccccccccEEECCCCcchhhcCcccccchhcc-------------------------------
Confidence            444444443 333 44444444   5555555 5554444445544444                               


Q ss_pred             CCCCCCcee-EEEccCCccCCCCCccccCcCCCCeEEccCCc-ccccCCCCccCC-CCCCEEeCCCCcCCCCCcccccCC
Q 036375          821 SKDTPRLFH-FIDLSGNNLHGDFPTQLTKLVGLVVLNLSRNH-IGGQIPENISGL-HQLASLDLSSNNLSGGIPSSLSSL  897 (1009)
Q Consensus       821 ~~~~~~~l~-~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~-l~~~~p~~l~~l-~~L~~L~Ls~N~l~~~ip~~l~~l  897 (1009)
                              + .|++++|+++ .+|......++|+.|+|++|+ +++..+..|.++ ++|+.||+++|++++. |..  .+
T Consensus       158 --------~~~L~l~~n~l~-~i~~~~~~~~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~~l-~~~--~~  225 (239)
T 2xwt_C          158 --------TLTLKLYNNGFT-SVQGYAFNGTKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVTAL-PSK--GL  225 (239)
T ss_dssp             --------EEEEECCSCCCC-EECTTTTTTCEEEEEECTTCTTCCEECTTTTTTCSBCCSEEECTTCCCCCC-CCT--TC
T ss_pred             --------eeEEEcCCCCCc-ccCHhhcCCCCCCEEEcCCCCCcccCCHHHhhccccCCcEEECCCCccccC-Chh--Hh
Confidence                    5 5566666665 333322222667777777774 776666777777 7777777777777754 333  45


Q ss_pred             CCCCeEeCCCC
Q 036375          898 SFLGYINLSRN  908 (1009)
Q Consensus       898 ~~L~~L~ls~N  908 (1009)
                      ++|+.|+++++
T Consensus       226 ~~L~~L~l~~~  236 (239)
T 2xwt_C          226 EHLKELIARNT  236 (239)
T ss_dssp             TTCSEEECTTC
T ss_pred             ccCceeeccCc
Confidence            67777777765

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=99.86  E-value=3.2e-23  Score=234.50  Aligned_cols=238  Identities=21%  Similarity=0.270  Sum_probs=189.4

Q ss_pred             hcCCCCccEEEccCCcccccCC----cccccCCCCCeEEccCC---cCCccCcCcc-------cCCCCCCEEECCCCcCc
Q 036375          614 SGSMPNLIFLSVSGNRLTGKIP----GSIGEMQLLQVIDLSRN---SISGSISSSI-------GNCTFLKVLDLSYSSLS  679 (1009)
Q Consensus       614 ~~~l~~L~~L~Ls~n~l~~~~~----~~~~~l~~L~~L~Ls~N---~l~~~~p~~l-------~~l~~L~~L~Ls~N~l~  679 (1009)
                      +..+++|++|++++|.+++..+    ..+..+++|++|++++|   ++++.+|..+       ..+++|++|+|++|+++
T Consensus        28 l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~  107 (386)
T 2ca6_A           28 LLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFG  107 (386)
T ss_dssp             HHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCCC
T ss_pred             HhcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCCcCC
Confidence            3457788888888888886544    34667889999999886   4455556554       68899999999999998


Q ss_pred             c----cCCccccCCCCCCEEEccCccccCCCchh----hcCC---------CCCCEEECcCCccc-ccCch---hhhhcC
Q 036375          680 G----VIPASLGQLTRLQSLHLNNNKLTGNLPSS----FQNL---------TSLETLDLGNNRFS-GNIPS---LLGNGF  738 (1009)
Q Consensus       680 ~----~~p~~~~~l~~L~~L~L~~N~l~~~~p~~----~~~l---------~~L~~L~L~~N~l~-~~ip~---~l~~~l  738 (1009)
                      +    .+|..+..+++|++|+|++|.+++..+..    +..+         ++|++|++++|+++ +.+|.   .+. .+
T Consensus       108 ~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~-~~  186 (386)
T 2ca6_A          108 PTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQ-SH  186 (386)
T ss_dssp             TTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHH-HC
T ss_pred             HHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHHHH-hC
Confidence            7    46777888999999999999987544433    3344         89999999999997 45553   333 48


Q ss_pred             cCCcEEEccCCcccc-----cCCcccCCCCCCCEEEccCCcCC----CCCChhhhhhhhhhhccchhhhhhcccccccee
Q 036375          739 VGLRILSLRSNAFSG-----EIPSKLSNLSSLQVLDLAENNLT----GSIPGSVGDLKAMAHVQNIVKYLLFGRYRGIYY  809 (1009)
Q Consensus       739 ~~L~~L~L~~N~l~~-----~~p~~l~~l~~L~~L~Ls~N~l~----~~~p~~~~~l~~L~~~~~~~~~~~~~~~~~~~~  809 (1009)
                      ++|+.|++++|+++.     ..|..+..+++|++|+|++|+++    +.+|..+..+++|                    
T Consensus       187 ~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L--------------------  246 (386)
T 2ca6_A          187 RLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNL--------------------  246 (386)
T ss_dssp             TTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTC--------------------
T ss_pred             CCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCc--------------------
Confidence            899999999999873     34557889999999999999996    5666666666665                    


Q ss_pred             eceEEEeecCCCCCCCCceeEEEccCCccCCC----CCcccc--CcCCCCeEEccCCcccc----cCCCCc-cCCCCCCE
Q 036375          810 EENLVINTKGSSKDTPRLFHFIDLSGNNLHGD----FPTQLT--KLVGLVVLNLSRNHIGG----QIPENI-SGLHQLAS  878 (1009)
Q Consensus       810 ~~~~~~~~~~~~~~~~~~l~~L~Ls~N~l~~~----~p~~l~--~l~~L~~L~Ls~N~l~~----~~p~~l-~~l~~L~~  878 (1009)
                                         +.|+|++|.+++.    +|..+.  .+++|+.|+|++|.+++    .+|..+ .++++|++
T Consensus       247 -------------------~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~  307 (386)
T 2ca6_A          247 -------------------RELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLF  307 (386)
T ss_dssp             -------------------CEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCE
T ss_pred             -------------------CEEECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceE
Confidence                               8899999999876    567774  49999999999999998    477777 67899999


Q ss_pred             EeCCCCcCCCCCc
Q 036375          879 LDLSSNNLSGGIP  891 (1009)
Q Consensus       879 L~Ls~N~l~~~ip  891 (1009)
                      |++++|++++..|
T Consensus       308 L~l~~N~l~~~~~  320 (386)
T 2ca6_A          308 LELNGNRFSEEDD  320 (386)
T ss_dssp             EECTTSBSCTTSH
T ss_pred             EEccCCcCCcchh
Confidence            9999999998875

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=99.85  E-value=5.5e-21  Score=208.25  Aligned_cols=147  Identities=27%  Similarity=0.402  Sum_probs=70.4

Q ss_pred             CCCccEEEccCCcccccCCcccccCCCCCeEEccCCcCCccCcCcccCCCCCCEEECCCCcCcccCCccccCCCCCCEEE
Q 036375          617 MPNLIFLSVSGNRLTGKIPGSIGEMQLLQVIDLSRNSISGSISSSIGNCTFLKVLDLSYSSLSGVIPASLGQLTRLQSLH  696 (1009)
Q Consensus       617 l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~  696 (1009)
                      +++|++|++++|.++.. + .+..+++|++|++++|++++..+  +..+++|++|++++|++++.  ..+..+++|++|+
T Consensus        40 l~~L~~L~l~~~~i~~l-~-~~~~l~~L~~L~L~~n~i~~~~~--~~~l~~L~~L~L~~n~l~~~--~~~~~l~~L~~L~  113 (308)
T 1h6u_A           40 LDGITTLSAFGTGVTTI-E-GVQYLNNLIGLELKDNQITDLAP--LKNLTKITELELSGNPLKNV--SAIAGLQSIKTLD  113 (308)
T ss_dssp             HHTCCEEECTTSCCCCC-T-TGGGCTTCCEEECCSSCCCCCGG--GTTCCSCCEEECCSCCCSCC--GGGTTCTTCCEEE
T ss_pred             cCCcCEEEeeCCCccCc-h-hhhccCCCCEEEccCCcCCCChh--HccCCCCCEEEccCCcCCCc--hhhcCCCCCCEEE
Confidence            44555555555555532 2 34555555555555555554333  55555555555555555532  2345555555555


Q ss_pred             ccCccccCCCchhhcCCCCCCEEECcCCcccccCchhhhhcCcCCcEEEccCCcccccCCcccCCCCCCCEEEccCCcCC
Q 036375          697 LNNNKLTGNLPSSFQNLTSLETLDLGNNRFSGNIPSLLGNGFVGLRILSLRSNAFSGEIPSKLSNLSSLQVLDLAENNLT  776 (1009)
Q Consensus       697 L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~ip~~l~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~  776 (1009)
                      +++|++++. + .+..+++|++|++++|.+++ ++. +. .+++|+.|++++|++++..+  +..+++|+.|++++|+++
T Consensus       114 l~~n~l~~~-~-~l~~l~~L~~L~l~~n~l~~-~~~-l~-~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~  186 (308)
T 1h6u_A          114 LTSTQITDV-T-PLAGLSNLQVLYLDLNQITN-ISP-LA-GLTNLQYLSIGNAQVSDLTP--LANLSKLTTLKADDNKIS  186 (308)
T ss_dssp             CTTSCCCCC-G-GGTTCTTCCEEECCSSCCCC-CGG-GG-GCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCC
T ss_pred             CCCCCCCCc-h-hhcCCCCCCEEECCCCccCc-Ccc-cc-CCCCccEEEccCCcCCCChh--hcCCCCCCEEECCCCccC
Confidence            555555432 2 24455555555555555542 222 22 24444444444444443211  444444444444444444

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=99.85  E-value=4.6e-21  Score=201.00  Aligned_cols=196  Identities=19%  Similarity=0.219  Sum_probs=119.7

Q ss_pred             CCCeEEccCCcCCccCcCcccCCCCCCEEECCCCc-CcccCCccccCCCCCCEEEccC-ccccCCCchhhcCCCCCCEEE
Q 036375          643 LLQVIDLSRNSISGSISSSIGNCTFLKVLDLSYSS-LSGVIPASLGQLTRLQSLHLNN-NKLTGNLPSSFQNLTSLETLD  720 (1009)
Q Consensus       643 ~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~-l~~~~p~~~~~l~~L~~L~L~~-N~l~~~~p~~~~~l~~L~~L~  720 (1009)
                      +|++|++++|++++..+..|.++++|++|++++|+ +++..+..|.++++|++|++++ |++++..+..|.++++|++|+
T Consensus        32 ~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L~  111 (239)
T 2xwt_C           32 STQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLG  111 (239)
T ss_dssp             TCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEEE
T ss_pred             cccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEEe
Confidence            34444444444444444444455555555555554 4444444455555555555554 555544444555555555555


Q ss_pred             CcCCcccccCchhhhhcCcCCc---EEEccCC-cccccCCcccCCCCCCC-EEEccCCcCCCCCChhhhhhhhhhhccch
Q 036375          721 LGNNRFSGNIPSLLGNGFVGLR---ILSLRSN-AFSGEIPSKLSNLSSLQ-VLDLAENNLTGSIPGSVGDLKAMAHVQNI  795 (1009)
Q Consensus       721 L~~N~l~~~ip~~l~~~l~~L~---~L~L~~N-~l~~~~p~~l~~l~~L~-~L~Ls~N~l~~~~p~~~~~l~~L~~~~~~  795 (1009)
                      +++|++++ +|. +. .+++|+   .|++++| .+++..+..|..+++|+ .|++++|+++ .+|......++|      
T Consensus       112 l~~n~l~~-lp~-~~-~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~-~i~~~~~~~~~L------  181 (239)
T 2xwt_C          112 IFNTGLKM-FPD-LT-KVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFT-SVQGYAFNGTKL------  181 (239)
T ss_dssp             EEEECCCS-CCC-CT-TCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCC-EECTTTTTTCEE------
T ss_pred             CCCCCCcc-ccc-cc-cccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCc-ccCHhhcCCCCC------
Confidence            55555552 444 22 355555   6777776 66655555677777788 8888888777 444332221333      


Q ss_pred             hhhhhccccccceeeceEEEeecCCCCCCCCceeEEEccCCc-cCCCCCccccCc-CCCCeEEccCCcccccCCCCccCC
Q 036375          796 VKYLLFGRYRGIYYEENLVINTKGSSKDTPRLFHFIDLSGNN-LHGDFPTQLTKL-VGLVVLNLSRNHIGGQIPENISGL  873 (1009)
Q Consensus       796 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~Ls~N~-l~~~~p~~l~~l-~~L~~L~Ls~N~l~~~~p~~l~~l  873 (1009)
                                                       +.|+|++|+ +++..+..|.++ ++|+.|++++|++++..+.   .+
T Consensus       182 ---------------------------------~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~~l~~~---~~  225 (239)
T 2xwt_C          182 ---------------------------------DAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVTALPSK---GL  225 (239)
T ss_dssp             ---------------------------------EEEECTTCTTCCEECTTTTTTCSBCCSEEECTTCCCCCCCCT---TC
T ss_pred             ---------------------------------CEEEcCCCCCcccCCHHHhhccccCCcEEECCCCccccCChh---Hh
Confidence                                             788888884 887777788888 8999999999999865444   56


Q ss_pred             CCCCEEeCCCC
Q 036375          874 HQLASLDLSSN  884 (1009)
Q Consensus       874 ~~L~~L~Ls~N  884 (1009)
                      ++|+.|+++++
T Consensus       226 ~~L~~L~l~~~  236 (239)
T 2xwt_C          226 EHLKELIARNT  236 (239)
T ss_dssp             TTCSEEECTTC
T ss_pred             ccCceeeccCc
Confidence            78889998876

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=99.85  E-value=6.7e-21  Score=207.56  Aligned_cols=194  Identities=25%  Similarity=0.408  Sum_probs=110.9

Q ss_pred             ccCCCCCeEEccCCcCCccCcCcccCCCCCCEEECCCCcCcccCCccccCCCCCCEEEccCccccCCCchhhcCCCCCCE
Q 036375          639 GEMQLLQVIDLSRNSISGSISSSIGNCTFLKVLDLSYSSLSGVIPASLGQLTRLQSLHLNNNKLTGNLPSSFQNLTSLET  718 (1009)
Q Consensus       639 ~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~  718 (1009)
                      ..+++|++|++++|.+.. +| .+..+++|++|++++|++++..+  +..+++|++|++++|++++. + .+..+++|++
T Consensus        38 ~~l~~L~~L~l~~~~i~~-l~-~~~~l~~L~~L~L~~n~i~~~~~--~~~l~~L~~L~L~~n~l~~~-~-~~~~l~~L~~  111 (308)
T 1h6u_A           38 ADLDGITTLSAFGTGVTT-IE-GVQYLNNLIGLELKDNQITDLAP--LKNLTKITELELSGNPLKNV-S-AIAGLQSIKT  111 (308)
T ss_dssp             HHHHTCCEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCCCGG--GTTCCSCCEEECCSCCCSCC-G-GGTTCTTCCE
T ss_pred             HHcCCcCEEEeeCCCccC-ch-hhhccCCCCEEEccCCcCCCChh--HccCCCCCEEEccCCcCCCc-h-hhcCCCCCCE
Confidence            345556666666665553 22 35555555555555555554322  55555555555555555532 2 3444555555


Q ss_pred             EECcCCcccccCchhhhhcCcCCcEEEccCCcccccCCcccCCCCCCCEEEccCCcCCCCCChhhhhhhhhhhccchhhh
Q 036375          719 LDLGNNRFSGNIPSLLGNGFVGLRILSLRSNAFSGEIPSKLSNLSSLQVLDLAENNLTGSIPGSVGDLKAMAHVQNIVKY  798 (1009)
Q Consensus       719 L~L~~N~l~~~ip~~l~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~~~~~~~~  798 (1009)
                      |++++|.+++ +|.                          +..+++|++|++++|++++..+  +..+++|         
T Consensus       112 L~l~~n~l~~-~~~--------------------------l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L---------  153 (308)
T 1h6u_A          112 LDLTSTQITD-VTP--------------------------LAGLSNLQVLYLDLNQITNISP--LAGLTNL---------  153 (308)
T ss_dssp             EECTTSCCCC-CGG--------------------------GTTCTTCCEEECCSSCCCCCGG--GGGCTTC---------
T ss_pred             EECCCCCCCC-chh--------------------------hcCCCCCCEEECCCCccCcCcc--ccCCCCc---------
Confidence            5555555442 222                          4555555555555555554322  3333333         


Q ss_pred             hhccccccceeeceEEEeecCCCCCCCCceeEEEccCCccCCCCCccccCcCCCCeEEccCCcccccCCCCccCCCCCCE
Q 036375          799 LLFGRYRGIYYEENLVINTKGSSKDTPRLFHFIDLSGNNLHGDFPTQLTKLVGLVVLNLSRNHIGGQIPENISGLHQLAS  878 (1009)
Q Consensus       799 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~  878 (1009)
                                                    +.|+|++|++++..+  +..+++|+.|++++|++++..+  +..+++|++
T Consensus       154 ------------------------------~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~  199 (308)
T 1h6u_A          154 ------------------------------QYLSIGNAQVSDLTP--LANLSKLTTLKADDNKISDISP--LASLPNLIE  199 (308)
T ss_dssp             ------------------------------CEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCCGG--GGGCTTCCE
T ss_pred             ------------------------------cEEEccCCcCCCChh--hcCCCCCCEEECCCCccCcChh--hcCCCCCCE
Confidence                                          556666666664333  6667777777777777776544  667777777


Q ss_pred             EeCCCCcCCCCCcccccCCCCCCeEeCCCCccee
Q 036375          879 LDLSSNNLSGGIPSSLSSLSFLGYINLSRNQLSG  912 (1009)
Q Consensus       879 L~Ls~N~l~~~ip~~l~~l~~L~~L~ls~N~l~g  912 (1009)
                      |++++|++++..|  +..+++|++|++++|++++
T Consensus       200 L~L~~N~l~~~~~--l~~l~~L~~L~l~~N~i~~  231 (308)
T 1h6u_A          200 VHLKNNQISDVSP--LANTSNLFIVTLTNQTITN  231 (308)
T ss_dssp             EECTTSCCCBCGG--GTTCTTCCEEEEEEEEEEC
T ss_pred             EEccCCccCcccc--ccCCCCCCEEEccCCeeec
Confidence            7777777776543  6777777777777777765

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=99.84  E-value=2.4e-20  Score=196.94  Aligned_cols=181  Identities=26%  Similarity=0.311  Sum_probs=137.0

Q ss_pred             CCCCeEEccCCcCCccCcCcccCCCCCCEEECCCCcCcccCCccccCCCCCCEEEccCccccCCCchhhcCCCCCCEEEC
Q 036375          642 QLLQVIDLSRNSISGSISSSIGNCTFLKVLDLSYSSLSGVIPASLGQLTRLQSLHLNNNKLTGNLPSSFQNLTSLETLDL  721 (1009)
Q Consensus       642 ~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L  721 (1009)
                      ...++++++++.++ .+|..+.  +.++.|++++|++++..+..|..+++|++|++++|++++..+..|..+++|++|++
T Consensus        14 ~~~~~l~~~~~~l~-~~p~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L   90 (251)
T 3m19_A           14 EGKKEVDCQGKSLD-SVPSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGL   90 (251)
T ss_dssp             GGGTEEECTTCCCS-SCCSCCC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEEC
T ss_pred             CCCeEEecCCCCcc-ccCCCCC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEEC
Confidence            46789999999998 5565554  68999999999999999999999999999999999999988888999999999999


Q ss_pred             cCCcccccCchhhhhcCcCCcEEEccCCcccccCCcccCCCCCCCEEEccCCcCCCCCChhhhhhhhhhhccchhhhhhc
Q 036375          722 GNNRFSGNIPSLLGNGFVGLRILSLRSNAFSGEIPSKLSNLSSLQVLDLAENNLTGSIPGSVGDLKAMAHVQNIVKYLLF  801 (1009)
Q Consensus       722 ~~N~l~~~ip~~l~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~~~~~~~~~~~  801 (1009)
                      ++|.++ .+|...+..+++|+.|++++|++++..+..+..+++|                                    
T Consensus        91 ~~n~l~-~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L------------------------------------  133 (251)
T 3m19_A           91 ANNQLA-SLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKL------------------------------------  133 (251)
T ss_dssp             TTSCCC-CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTC------------------------------------
T ss_pred             CCCccc-ccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcc------------------------------------
Confidence            999887 3433322235555555555555543333334444444                                    


Q ss_pred             cccccceeeceEEEeecCCCCCCCCceeEEEccCCccCCCCCccccCcCCCCeEEccCCcccccCCCCccCCCCCCEEeC
Q 036375          802 GRYRGIYYEENLVINTKGSSKDTPRLFHFIDLSGNNLHGDFPTQLTKLVGLVVLNLSRNHIGGQIPENISGLHQLASLDL  881 (1009)
Q Consensus       802 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L  881 (1009)
                                                 +.|+|++|++++..+..|+.+++|++|+|++|++++.++..+..+++|+.|+|
T Consensus       134 ---------------------------~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l  186 (251)
T 3m19_A          134 ---------------------------KELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITL  186 (251)
T ss_dssp             ---------------------------CEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEEC
T ss_pred             ---------------------------cEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCCccCHHHHhCCCCCCEEEe
Confidence                                       45555555555555556777788888888888888887778888888888888


Q ss_pred             CCCcCCCC
Q 036375          882 SSNNLSGG  889 (1009)
Q Consensus       882 s~N~l~~~  889 (1009)
                      ++|.+++.
T Consensus       187 ~~N~~~c~  194 (251)
T 3m19_A          187 FGNQFDCS  194 (251)
T ss_dssp             CSCCBCTT
T ss_pred             eCCceeCC
Confidence            88888876

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=99.82  E-value=4.7e-20  Score=205.05  Aligned_cols=172  Identities=21%  Similarity=0.185  Sum_probs=108.9

Q ss_pred             ccEEEccCCcCCCcCCchhhcCCCCccEEEccCCcccccCCcccccCCCCCeEEccCCcCCccCc-CcccCCCCCCE-EE
Q 036375          595 IELLDLSNNHFSGPIPQNISGSMPNLIFLSVSGNRLTGKIPGSIGEMQLLQVIDLSRNSISGSIS-SSIGNCTFLKV-LD  672 (1009)
Q Consensus       595 L~~L~Ls~n~l~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p-~~l~~l~~L~~-L~  672 (1009)
                      -+.++.++++++ .+|..+   .+++++|+|++|+|+.+.+.+|.++++|++|+|++|++.+.+| ..|.+++++++ +.
T Consensus        11 ~~~v~C~~~~Lt-~iP~~l---~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~   86 (350)
T 4ay9_X           11 NRVFLCQESKVT-EIPSDL---PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRI   86 (350)
T ss_dssp             TTEEEEESTTCC-SCCTTC---CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEE
T ss_pred             CCEEEecCCCCC-ccCcCc---CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhc
Confidence            357788888887 777654   3567888888888877666777778888888888887765444 45677777664 45


Q ss_pred             CCCCcCcccCCccccCCCCCCEEEccCccccCCCchhhcCCCCCCEEECcCC-cccccCchhhhhcC-cCCcEEEccCCc
Q 036375          673 LSYSSLSGVIPASLGQLTRLQSLHLNNNKLTGNLPSSFQNLTSLETLDLGNN-RFSGNIPSLLGNGF-VGLRILSLRSNA  750 (1009)
Q Consensus       673 Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N-~l~~~ip~~l~~~l-~~L~~L~L~~N~  750 (1009)
                      ++.|++++..|..|..+++|++|++++|++++..+..+....++..+++.++ .+. .+|...+..+ ..++.|++++|+
T Consensus        87 ~~~N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~-~l~~~~f~~~~~~l~~L~L~~N~  165 (350)
T 4ay9_X           87 EKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIH-TIERNSFVGLSFESVILWLNKNG  165 (350)
T ss_dssp             EEETTCCEECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCC-EECTTSSTTSBSSCEEEECCSSC
T ss_pred             ccCCcccccCchhhhhccccccccccccccccCCchhhcccchhhhhhhccccccc-cccccchhhcchhhhhhcccccc
Confidence            5567777777777777777777777777777655555555566666666543 333 4444322222 245555566655


Q ss_pred             ccccCCcccCCCCCCCEEEccC
Q 036375          751 FSGEIPSKLSNLSSLQVLDLAE  772 (1009)
Q Consensus       751 l~~~~p~~l~~l~~L~~L~Ls~  772 (1009)
                      ++ .+|.......+|+.+++++
T Consensus       166 i~-~i~~~~f~~~~L~~l~l~~  186 (350)
T 4ay9_X          166 IQ-EIHNSAFNGTQLDELNLSD  186 (350)
T ss_dssp             CC-EECTTSSTTEEEEEEECTT
T ss_pred             cc-CCChhhccccchhHHhhcc
Confidence            55 3333333444555555543

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=99.81  E-value=7.7e-20  Score=213.35  Aligned_cols=45  Identities=36%  Similarity=0.467  Sum_probs=29.2

Q ss_pred             CeEEccCCcccccCCCCccCCCCCCEEeCCCCcCCCCCcccccCCC
Q 036375          853 VVLNLSRNHIGGQIPENISGLHQLASLDLSSNNLSGGIPSSLSSLS  898 (1009)
Q Consensus       853 ~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~  898 (1009)
                      +.|+|++|+|+ .+|..+..+++|+.|+|++|.+++.+|..+..++
T Consensus       210 ~~L~Ls~N~l~-~lp~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~  254 (571)
T 3cvr_A          210 IFFRCRENRIT-HIPENILSLDPTCTIILEDNPLSSRIRESLSQQT  254 (571)
T ss_dssp             EEEECCSSCCC-CCCGGGGGSCTTEEEECCSSSCCHHHHHHHHHHH
T ss_pred             eEEecCCCcce-ecCHHHhcCCCCCEEEeeCCcCCCcCHHHHHHhh
Confidence            66666666666 3555566666677777777777666666665543

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=99.81  E-value=1.4e-19  Score=211.26  Aligned_cols=162  Identities=27%  Similarity=0.392  Sum_probs=102.3

Q ss_pred             CCCCEEEccCccccCCCchhhcCCCCCCEEECcCCcccccCchhhhhcCcCCcEEEccCCcccccCCcccCCCCCCCEEE
Q 036375          690 TRLQSLHLNNNKLTGNLPSSFQNLTSLETLDLGNNRFSGNIPSLLGNGFVGLRILSLRSNAFSGEIPSKLSNLSSLQVLD  769 (1009)
Q Consensus       690 ~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~ip~~l~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~  769 (1009)
                      ++|++|+|++|+++ .+|   ..+++|++|++++|.+++ +|. +.   .+|+.|++++|++++ +|.   .+++|+.|+
T Consensus        80 ~~L~~L~Ls~N~l~-~ip---~~l~~L~~L~Ls~N~l~~-ip~-l~---~~L~~L~Ls~N~l~~-lp~---~l~~L~~L~  146 (571)
T 3cvr_A           80 PQITVLEITQNALI-SLP---ELPASLEYLDACDNRLST-LPE-LP---ASLKHLDVDNNQLTM-LPE---LPALLEYIN  146 (571)
T ss_dssp             TTCSEEECCSSCCS-CCC---CCCTTCCEEECCSSCCSC-CCC-CC---TTCCEEECCSSCCSC-CCC---CCTTCCEEE
T ss_pred             CCCCEEECcCCCCc-ccc---cccCCCCEEEccCCCCCC-cch-hh---cCCCEEECCCCcCCC-CCC---cCccccEEe
Confidence            34444444444444 233   223445555555555543 444 22   155555555555554 443   455666666


Q ss_pred             ccCCcCCCCCChhhhhhhhhhhccchhhhhhccccccceeeceEEEeecCCCCCCCCceeEEEccCCccCCCCCccccCc
Q 036375          770 LAENNLTGSIPGSVGDLKAMAHVQNIVKYLLFGRYRGIYYEENLVINTKGSSKDTPRLFHFIDLSGNNLHGDFPTQLTKL  849 (1009)
Q Consensus       770 Ls~N~l~~~~p~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~Ls~N~l~~~~p~~l~~l  849 (1009)
                      +++|++++ +|.   .+++|                                       +.|+|++|+|++ +|. |.  
T Consensus       147 Ls~N~l~~-lp~---~l~~L---------------------------------------~~L~Ls~N~L~~-lp~-l~--  179 (571)
T 3cvr_A          147 ADNNQLTM-LPE---LPTSL---------------------------------------EVLSVRNNQLTF-LPE-LP--  179 (571)
T ss_dssp             CCSSCCSC-CCC---CCTTC---------------------------------------CEEECCSSCCSC-CCC-CC--
T ss_pred             CCCCccCc-CCC---cCCCc---------------------------------------CEEECCCCCCCC-cch-hh--
Confidence            66666664 443   22222                                       666777777776 555 55  


Q ss_pred             CCCCeEEccCCcccccCCCCccCCCCC-------CEEeCCCCcCCCCCcccccCCCCCCeEeCCCCcceecCCC
Q 036375          850 VGLVVLNLSRNHIGGQIPENISGLHQL-------ASLDLSSNNLSGGIPSSLSSLSFLGYINLSRNQLSGKIPF  916 (1009)
Q Consensus       850 ~~L~~L~Ls~N~l~~~~p~~l~~l~~L-------~~L~Ls~N~l~~~ip~~l~~l~~L~~L~ls~N~l~g~ip~  916 (1009)
                      ++|+.|+|++|+|+ .+|. +..  +|       +.|+|++|+|+ .+|..+..+++|++|++++|+++|.+|.
T Consensus       180 ~~L~~L~Ls~N~L~-~lp~-~~~--~L~~~~~~L~~L~Ls~N~l~-~lp~~l~~l~~L~~L~L~~N~l~~~~p~  248 (571)
T 3cvr_A          180 ESLEALDVSTNLLE-SLPA-VPV--RNHHSEETEIFFRCRENRIT-HIPENILSLDPTCTIILEDNPLSSRIRE  248 (571)
T ss_dssp             TTCCEEECCSSCCS-SCCC-CC----------CCEEEECCSSCCC-CCCGGGGGSCTTEEEECCSSSCCHHHHH
T ss_pred             CCCCEEECcCCCCC-chhh-HHH--hhhcccccceEEecCCCcce-ecCHHHhcCCCCCEEEeeCCcCCCcCHH
Confidence            78888888888888 5555 554  67       99999999999 5888888899999999999999998875

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=99.81  E-value=2.1e-19  Score=199.86  Aligned_cols=180  Identities=17%  Similarity=0.120  Sum_probs=85.7

Q ss_pred             CCccEEEccCCcCCCcCCchhhcCCCCccEEEccCCcccccCC-cccccCCCCCe-EEccCCcCCccCcCcccCCCCCCE
Q 036375          593 VEIELLDLSNNHFSGPIPQNISGSMPNLIFLSVSGNRLTGKIP-GSIGEMQLLQV-IDLSRNSISGSISSSIGNCTFLKV  670 (1009)
Q Consensus       593 ~~L~~L~Ls~n~l~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~~-~~~~~l~~L~~-L~Ls~N~l~~~~p~~l~~l~~L~~  670 (1009)
                      .++++|+|++|+++ .+|...|..+++|++|+|++|++.+.+| .+|.+++++++ +.+..|+++...|..|..+++|++
T Consensus        30 ~~l~~L~Ls~N~i~-~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~l~~l~~~~f~~l~~L~~  108 (350)
T 4ay9_X           30 RNAIELRFVLTKLR-VIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQY  108 (350)
T ss_dssp             TTCSEEEEESCCCS-EECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETTCCEECTTSBCCCTTCCE
T ss_pred             CCCCEEEccCCcCC-CcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCcccccCchhhhhcccccc
Confidence            34555555555554 4444444555555555555555543332 34455554443 333445555444555555555555


Q ss_pred             EECCCCcCcccCCccccCCCCCCEEEccC-ccccCCCchhhcCCC-CCCEEECcCCcccccCchhhhhcCcCCcEEEccC
Q 036375          671 LDLSYSSLSGVIPASLGQLTRLQSLHLNN-NKLTGNLPSSFQNLT-SLETLDLGNNRFSGNIPSLLGNGFVGLRILSLRS  748 (1009)
Q Consensus       671 L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~-N~l~~~~p~~~~~l~-~L~~L~L~~N~l~~~ip~~l~~~l~~L~~L~L~~  748 (1009)
                      |++++|++++..+..+....++..|++.+ +++....+..|..+. .++.|++++|.++ .+|...+. ..+|+.+++.+
T Consensus       109 L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~-~i~~~~f~-~~~L~~l~l~~  186 (350)
T 4ay9_X          109 LLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQ-EIHNSAFN-GTQLDELNLSD  186 (350)
T ss_dssp             EEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCC-EECTTSST-TEEEEEEECTT
T ss_pred             ccccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhcccccccc-CCChhhcc-ccchhHHhhcc
Confidence            55555555544444444444455555533 334433333344432 3445555555554 44444332 34455555543


Q ss_pred             -CcccccCC-cccCCCCCCCEEEccCCcCC
Q 036375          749 -NAFSGEIP-SKLSNLSSLQVLDLAENNLT  776 (1009)
Q Consensus       749 -N~l~~~~p-~~l~~l~~L~~L~Ls~N~l~  776 (1009)
                       |.++ .+| ..|..+++|++||+++|+++
T Consensus       187 ~n~l~-~i~~~~f~~l~~L~~LdLs~N~l~  215 (350)
T 4ay9_X          187 NNNLE-ELPNDVFHGASGPVILDISRTRIH  215 (350)
T ss_dssp             CTTCC-CCCTTTTTTEECCSEEECTTSCCC
T ss_pred             CCccc-CCCHHHhccCcccchhhcCCCCcC
Confidence             2333 333 23455555555555555555

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=99.81  E-value=2.8e-19  Score=182.95  Aligned_cols=161  Identities=26%  Similarity=0.373  Sum_probs=77.4

Q ss_pred             CCccEEEccCCcCCCcCCchhhcCCCCccEEEccCCcccccCCcccccCCCCCeEEccCCcCCccCcCcccCCCCCCEEE
Q 036375          593 VEIELLDLSNNHFSGPIPQNISGSMPNLIFLSVSGNRLTGKIPGSIGEMQLLQVIDLSRNSISGSISSSIGNCTFLKVLD  672 (1009)
Q Consensus       593 ~~L~~L~Ls~n~l~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~  672 (1009)
                      .++++|++++|.++ .++...+..+++|++|++++|++++..+..|..+++|++|++++|++++..+..+..+++|++|+
T Consensus        28 ~~l~~L~l~~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~  106 (208)
T 2o6s_A           28 AQTTYLDLETNSLK-SLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELA  106 (208)
T ss_dssp             TTCSEEECCSSCCC-CCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred             CCCcEEEcCCCccC-cCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCcCCccCHhHhcCccCCCEEE
Confidence            34555555555554 33333444455555555555555544444444555555555555555544444444555555555


Q ss_pred             CCCCcCcccCCccccCCCCCCEEEccCccccCCCchhhcCCCCCCEEECcCCcccccCchhhhhcCcCCcEEEccCCccc
Q 036375          673 LSYSSLSGVIPASLGQLTRLQSLHLNNNKLTGNLPSSFQNLTSLETLDLGNNRFSGNIPSLLGNGFVGLRILSLRSNAFS  752 (1009)
Q Consensus       673 Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~ip~~l~~~l~~L~~L~L~~N~l~  752 (1009)
                      +++|++++..+..|..+++|++|++++|++++..+..+..+++|++|++++|++.+.        +++|+.|+++.|+++
T Consensus       107 L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~--------~~~l~~L~~~~n~~~  178 (208)
T 2o6s_A          107 LNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDCT--------CPGIRYLSEWINKHS  178 (208)
T ss_dssp             CCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCCC--------TTTTHHHHHHHHHCT
T ss_pred             cCCCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCCCeecC--------CCCHHHHHHHHHhCC
Confidence            555555544444444455555555555555544333444455555555555544321        233444444444444


Q ss_pred             ccCCcccCCC
Q 036375          753 GEIPSKLSNL  762 (1009)
Q Consensus       753 ~~~p~~l~~l  762 (1009)
                      |.+|.+++.+
T Consensus       179 g~ip~~~~~l  188 (208)
T 2o6s_A          179 GVVRNSAGSV  188 (208)
T ss_dssp             TTBBCTTSSB
T ss_pred             ceeeccCccc
Confidence            4444444433

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=99.80  E-value=3e-19  Score=182.68  Aligned_cols=109  Identities=29%  Similarity=0.376  Sum_probs=46.2

Q ss_pred             CCCEEECCCCcCcccCCccccCCCCCCEEEccCccccCCCchhhcCCCCCCEEECcCCcccccCchhhhhcCcCCcEEEc
Q 036375          667 FLKVLDLSYSSLSGVIPASLGQLTRLQSLHLNNNKLTGNLPSSFQNLTSLETLDLGNNRFSGNIPSLLGNGFVGLRILSL  746 (1009)
Q Consensus       667 ~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~ip~~l~~~l~~L~~L~L  746 (1009)
                      +|++|++++|++++..+..|..+++|++|++++|++++..+..|..+++|++|++++|.++ .+|...+..+++|+.|++
T Consensus        29 ~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~-~~~~~~~~~l~~L~~L~L  107 (208)
T 2o6s_A           29 QTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQ-SLPNGVFDKLTQLKELAL  107 (208)
T ss_dssp             TCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEEC
T ss_pred             CCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCcCC-ccCHhHhcCccCCCEEEc
Confidence            4444444444444444444444444444444444444333333444444444444444444 222221112344444444


Q ss_pred             cCCcccccCCcccCCCCCCCEEEccCCcCC
Q 036375          747 RSNAFSGEIPSKLSNLSSLQVLDLAENNLT  776 (1009)
Q Consensus       747 ~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~  776 (1009)
                      ++|++++..+..+..+++|++|++++|+++
T Consensus       108 ~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~  137 (208)
T 2o6s_A          108 NTNQLQSLPDGVFDKLTQLKDLRLYQNQLK  137 (208)
T ss_dssp             CSSCCCCCCTTTTTTCTTCCEEECCSSCCS
T ss_pred             CCCcCcccCHhHhccCCcCCEEECCCCccc
Confidence            444443333333344444444444444444

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=99.80  E-value=7.8e-20  Score=188.33  Aligned_cols=157  Identities=22%  Similarity=0.271  Sum_probs=129.8

Q ss_pred             CEEECcCCcccccCchhhhhcCcCCcEEEccCCcccccCC-cccCCCCCCCEEEccCCcCCCCCChhhhhhhhhhhccch
Q 036375          717 ETLDLGNNRFSGNIPSLLGNGFVGLRILSLRSNAFSGEIP-SKLSNLSSLQVLDLAENNLTGSIPGSVGDLKAMAHVQNI  795 (1009)
Q Consensus       717 ~~L~L~~N~l~~~ip~~l~~~l~~L~~L~L~~N~l~~~~p-~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~~~~~  795 (1009)
                      +++++++|.++ .+|..+   ...++.|++++|++++..| ..|..+++|++|++++|++++..|..|..+++|      
T Consensus        14 ~~l~~s~n~l~-~iP~~~---~~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L------   83 (220)
T 2v70_A           14 TTVDCSNQKLN-KIPEHI---PQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGV------   83 (220)
T ss_dssp             TEEECCSSCCS-SCCSCC---CTTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTC------
T ss_pred             CEeEeCCCCcc-cCccCC---CCCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCC------
Confidence            46677777765 566543   3456777777777776644 346778888888888888887777777777766      


Q ss_pred             hhhhhccccccceeeceEEEeecCCCCCCCCceeEEEccCCccCCCCCccccCcCCCCeEEccCCcccccCCCCccCCCC
Q 036375          796 VKYLLFGRYRGIYYEENLVINTKGSSKDTPRLFHFIDLSGNNLHGDFPTQLTKLVGLVVLNLSRNHIGGQIPENISGLHQ  875 (1009)
Q Consensus       796 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~  875 (1009)
                                                       +.|+|++|++++..|..|.++++|++|+|++|++++.+|..|.++++
T Consensus        84 ---------------------------------~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~  130 (220)
T 2v70_A           84 ---------------------------------NEILLTSNRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSS  130 (220)
T ss_dssp             ---------------------------------CEEECCSSCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTT
T ss_pred             ---------------------------------CEEECCCCccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCcc
Confidence                                             78888888888888888999999999999999999999999999999


Q ss_pred             CCEEeCCCCcCCCCCcccccCCCCCCeEeCCCCcceecCCC
Q 036375          876 LASLDLSSNNLSGGIPSSLSSLSFLGYINLSRNQLSGKIPF  916 (1009)
Q Consensus       876 L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~ls~N~l~g~ip~  916 (1009)
                      |++|+|++|++++..|..|..+++|++|++++|++++..+.
T Consensus       131 L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c~l  171 (220)
T 2v70_A          131 VRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFNCNCYL  171 (220)
T ss_dssp             CSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCEECSGGG
T ss_pred             CCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCCcCCCch
Confidence            99999999999999999999999999999999999987663

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=99.77  E-value=2.6e-18  Score=176.93  Aligned_cols=155  Identities=22%  Similarity=0.296  Sum_probs=130.3

Q ss_pred             CEEECcCCcccccCchhhhhcCcCCcEEEccCCcccccCCcccCCCCCCCEEEccCCcCCCCCChhhhhhhhhhhccchh
Q 036375          717 ETLDLGNNRFSGNIPSLLGNGFVGLRILSLRSNAFSGEIPSKLSNLSSLQVLDLAENNLTGSIPGSVGDLKAMAHVQNIV  796 (1009)
Q Consensus       717 ~~L~L~~N~l~~~ip~~l~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~~~~~~  796 (1009)
                      +.+++++|.++ .+|..+   .++++.|++++|.+++..+..|..+++|++|+|++|++++..|..|.++++|       
T Consensus        14 ~~v~c~~~~l~-~iP~~l---~~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L-------   82 (220)
T 2v9t_B           14 NIVDCRGKGLT-EIPTNL---PETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSL-------   82 (220)
T ss_dssp             TEEECTTSCCS-SCCSSC---CTTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSC-------
T ss_pred             CEEEcCCCCcC-cCCCcc---CcCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCC-------
Confidence            46677777776 666653   3577888888888876666678888888888888888888778888777766       


Q ss_pred             hhhhccccccceeeceEEEeecCCCCCCCCceeEEEccCCccCCCCCccccCcCCCCeEEccCCcccccCCCCccCCCCC
Q 036375          797 KYLLFGRYRGIYYEENLVINTKGSSKDTPRLFHFIDLSGNNLHGDFPTQLTKLVGLVVLNLSRNHIGGQIPENISGLHQL  876 (1009)
Q Consensus       797 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L  876 (1009)
                                                      ++|+|++|+|++..+..|.++++|++|+|++|++++..|..|.++++|
T Consensus        83 --------------------------------~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L  130 (220)
T 2v9t_B           83 --------------------------------NSLVLYGNKITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNL  130 (220)
T ss_dssp             --------------------------------CEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTC
T ss_pred             --------------------------------CEEECCCCcCCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCC
Confidence                                            788888888887767778899999999999999999999999999999


Q ss_pred             CEEeCCCCcCCCCCcccccCCCCCCeEeCCCCcceecC
Q 036375          877 ASLDLSSNNLSGGIPSSLSSLSFLGYINLSRNQLSGKI  914 (1009)
Q Consensus       877 ~~L~Ls~N~l~~~ip~~l~~l~~L~~L~ls~N~l~g~i  914 (1009)
                      ++|+|++|++++..+..|..+++|++|++++|++....
T Consensus       131 ~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c~c  168 (220)
T 2v9t_B          131 NLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFICDC  168 (220)
T ss_dssp             CEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCEECSG
T ss_pred             CEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCcCCCC
Confidence            99999999999988888999999999999999997643

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=99.75  E-value=8.1e-18  Score=174.47  Aligned_cols=156  Identities=25%  Similarity=0.283  Sum_probs=130.9

Q ss_pred             CCEEECcCCcccccCchhhhhcCcCCcEEEccCCcccccCCcccCCCCCCCEEEccCCcCCCCCChhhhhhhhhhhccch
Q 036375          716 LETLDLGNNRFSGNIPSLLGNGFVGLRILSLRSNAFSGEIPSKLSNLSSLQVLDLAENNLTGSIPGSVGDLKAMAHVQNI  795 (1009)
Q Consensus       716 L~~L~L~~N~l~~~ip~~l~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~~~~~  795 (1009)
                      -+.++.+++.+. .+|..+   .++|+.|++++|.+++..|..|..+++|++|+|++|++++..+..|..++.|      
T Consensus        21 ~~~v~c~~~~l~-~ip~~~---~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L------   90 (229)
T 3e6j_A           21 GTTVDCRSKRHA-SVPAGI---PTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQL------   90 (229)
T ss_dssp             TTEEECTTSCCS-SCCSCC---CTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTC------
T ss_pred             CCEeEccCCCcC-ccCCCC---CCCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCc------
Confidence            456777777776 677654   4778888888888887778888888888888888888876666666777766      


Q ss_pred             hhhhhccccccceeeceEEEeecCCCCCCCCceeEEEccCCccCCCCCccccCcCCCCeEEccCCcccccCCCCccCCCC
Q 036375          796 VKYLLFGRYRGIYYEENLVINTKGSSKDTPRLFHFIDLSGNNLHGDFPTQLTKLVGLVVLNLSRNHIGGQIPENISGLHQ  875 (1009)
Q Consensus       796 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~  875 (1009)
                                                       +.|+|++|+|++..+..|..+++|++|+|++|+|+ .+|..+..+++
T Consensus        91 ---------------------------------~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~  136 (229)
T 3e6j_A           91 ---------------------------------TVLDLGTNQLTVLPSAVFDRLVHLKELFMCCNKLT-ELPRGIERLTH  136 (229)
T ss_dssp             ---------------------------------CEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-SCCTTGGGCTT
T ss_pred             ---------------------------------CEEECCCCcCCccChhHhCcchhhCeEeccCCccc-ccCcccccCCC
Confidence                                             78899999998887888899999999999999999 77888999999


Q ss_pred             CCEEeCCCCcCCCCCcccccCCCCCCeEeCCCCcceecCC
Q 036375          876 LASLDLSSNNLSGGIPSSLSSLSFLGYINLSRNQLSGKIP  915 (1009)
Q Consensus       876 L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~ls~N~l~g~ip  915 (1009)
                      |++|+|++|++++..+..|..+++|++|++++|++++..+
T Consensus       137 L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~  176 (229)
T 3e6j_A          137 LTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPWDCECR  176 (229)
T ss_dssp             CSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCBCTTBG
T ss_pred             CCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCCccCCcc
Confidence            9999999999998888889999999999999999987765

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=99.75  E-value=7.8e-18  Score=181.49  Aligned_cols=187  Identities=27%  Similarity=0.380  Sum_probs=111.0

Q ss_pred             eEEccCCcCCccCcCcccCCCCCCEEECCCCcCcccCCccccCCCCCCEEEccCccccCCCchhhcCCCCCCEEECcCCc
Q 036375          646 VIDLSRNSISGSISSSIGNCTFLKVLDLSYSSLSGVIPASLGQLTRLQSLHLNNNKLTGNLPSSFQNLTSLETLDLGNNR  725 (1009)
Q Consensus       646 ~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~  725 (1009)
                      .+.+..+.+++..  .+..+++|+.|++++|.+... + .+..+++|++|++++|++++..+  +..+++|++|++++|.
T Consensus        28 ~~~l~~~~~~~~~--~~~~l~~L~~L~l~~~~i~~~-~-~~~~l~~L~~L~L~~n~l~~~~~--l~~l~~L~~L~l~~n~  101 (291)
T 1h6t_A           28 KDNLKKKSVTDAV--TQNELNSIDQIIANNSDIKSV-Q-GIQYLPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDENK  101 (291)
T ss_dssp             HHHTTCSCTTSEE--CHHHHHTCCEEECTTSCCCCC-T-TGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSC
T ss_pred             HHHhcCCCccccc--chhhcCcccEEEccCCCcccC-h-hHhcCCCCCEEEccCCccCCCcc--cccCCCCCEEECCCCc
Confidence            3445555554332  234566677777777766643 2 35666666666666666664332  5666666666666666


Q ss_pred             ccccCchhhhhcCcCCcEEEccCCcccccCCcccCCCCCCCEEEccCCcCCCCCChhhhhhhhhhhccchhhhhhccccc
Q 036375          726 FSGNIPSLLGNGFVGLRILSLRSNAFSGEIPSKLSNLSSLQVLDLAENNLTGSIPGSVGDLKAMAHVQNIVKYLLFGRYR  805 (1009)
Q Consensus       726 l~~~ip~~l~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~~~~~~~~~~~~~~~  805 (1009)
                      +++ +|.                          +..+++|++|++++|++++.  ..+..+++|                
T Consensus       102 l~~-~~~--------------------------l~~l~~L~~L~L~~n~i~~~--~~l~~l~~L----------------  136 (291)
T 1h6t_A          102 VKD-LSS--------------------------LKDLKKLKSLSLEHNGISDI--NGLVHLPQL----------------  136 (291)
T ss_dssp             CCC-GGG--------------------------GTTCTTCCEEECTTSCCCCC--GGGGGCTTC----------------
T ss_pred             CCC-Chh--------------------------hccCCCCCEEECCCCcCCCC--hhhcCCCCC----------------
Confidence            552 322                          44445555555555555432  223333333                


Q ss_pred             cceeeceEEEeecCCCCCCCCceeEEEccCCccCCCCCccccCcCCCCeEEccCCcccccCCCCccCCCCCCEEeCCCCc
Q 036375          806 GIYYEENLVINTKGSSKDTPRLFHFIDLSGNNLHGDFPTQLTKLVGLVVLNLSRNHIGGQIPENISGLHQLASLDLSSNN  885 (1009)
Q Consensus       806 ~~~~~~~~~~~~~~~~~~~~~~l~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~  885 (1009)
                                             +.|++++|++++.  ..+..+++|+.|++++|++++..|  +..+++|+.|++++|+
T Consensus       137 -----------------------~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~L~~N~  189 (291)
T 1h6t_A          137 -----------------------ESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNH  189 (291)
T ss_dssp             -----------------------CEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSC
T ss_pred             -----------------------CEEEccCCcCCcc--hhhccCCCCCEEEccCCccccchh--hcCCCccCEEECCCCc
Confidence                                   5555555655543  456667777777777777776554  7777777777777777


Q ss_pred             CCCCCcccccCCCCCCeEeCCCCccee
Q 036375          886 LSGGIPSSLSSLSFLGYINLSRNQLSG  912 (1009)
Q Consensus       886 l~~~ip~~l~~l~~L~~L~ls~N~l~g  912 (1009)
                      +++. | .+..+++|++|++++|+++.
T Consensus       190 i~~l-~-~l~~l~~L~~L~l~~n~i~~  214 (291)
T 1h6t_A          190 ISDL-R-ALAGLKNLDVLELFSQECLN  214 (291)
T ss_dssp             CCBC-G-GGTTCTTCSEEEEEEEEEEC
T ss_pred             CCCC-h-hhccCCCCCEEECcCCcccC
Confidence            7753 3 36777777777777777765

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=99.74  E-value=4.4e-18  Score=183.49  Aligned_cols=146  Identities=27%  Similarity=0.330  Sum_probs=112.0

Q ss_pred             ccEEEccCCcccccCCcccccCCCCCeEEccCCcCCccCcCcccCCCCCCEEECCCCcCcccCCccccCCCCCCEEEccC
Q 036375          620 LIFLSVSGNRLTGKIPGSIGEMQLLQVIDLSRNSISGSISSSIGNCTFLKVLDLSYSSLSGVIPASLGQLTRLQSLHLNN  699 (1009)
Q Consensus       620 L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~  699 (1009)
                      +..+.+..+.+++..  .+..+++|+.|++++|.+... + .+..+++|++|++++|++++..+  +..+++|++|++++
T Consensus        26 ~~~~~l~~~~~~~~~--~~~~l~~L~~L~l~~~~i~~~-~-~~~~l~~L~~L~L~~n~l~~~~~--l~~l~~L~~L~l~~   99 (291)
T 1h6t_A           26 TIKDNLKKKSVTDAV--TQNELNSIDQIIANNSDIKSV-Q-GIQYLPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDE   99 (291)
T ss_dssp             HHHHHTTCSCTTSEE--CHHHHHTCCEEECTTSCCCCC-T-TGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCS
T ss_pred             HHHHHhcCCCccccc--chhhcCcccEEEccCCCcccC-h-hHhcCCCCCEEEccCCccCCCcc--cccCCCCCEEECCC
Confidence            444556666666543  345789999999999999865 3 58999999999999999997655  89999999999999


Q ss_pred             ccccCCCchhhcCCCCCCEEECcCCcccccCchhhhhcCcCCcEEEccCCcccccCCcccCCCCCCCEEEccCCcCCCC
Q 036375          700 NKLTGNLPSSFQNLTSLETLDLGNNRFSGNIPSLLGNGFVGLRILSLRSNAFSGEIPSKLSNLSSLQVLDLAENNLTGS  778 (1009)
Q Consensus       700 N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~ip~~l~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~  778 (1009)
                      |++++ + ..+..+++|++|++++|.+++ ++ .+. .+++|+.|++++|++++.  ..+..+++|++|++++|++++.
T Consensus       100 n~l~~-~-~~l~~l~~L~~L~L~~n~i~~-~~-~l~-~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~N~l~~~  171 (291)
T 1h6t_A          100 NKVKD-L-SSLKDLKKLKSLSLEHNGISD-IN-GLV-HLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDI  171 (291)
T ss_dssp             SCCCC-G-GGGTTCTTCCEEECTTSCCCC-CG-GGG-GCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCC
T ss_pred             CcCCC-C-hhhccCCCCCEEECCCCcCCC-Ch-hhc-CCCCCCEEEccCCcCCcc--hhhccCCCCCEEEccCCccccc
Confidence            99986 3 458999999999999999984 44 333 377777777777777643  3566666666666666666543

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=99.74  E-value=1.1e-17  Score=197.82  Aligned_cols=130  Identities=28%  Similarity=0.392  Sum_probs=60.0

Q ss_pred             cCCCCCeEEccCCcCCccCcCcccCCCCCCEEECCCCcCcccCCccccCCCCCCEEEccCccccCCCchhhcCCCCCCEE
Q 036375          640 EMQLLQVIDLSRNSISGSISSSIGNCTFLKVLDLSYSSLSGVIPASLGQLTRLQSLHLNNNKLTGNLPSSFQNLTSLETL  719 (1009)
Q Consensus       640 ~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L  719 (1009)
                      .+++|+.|++++|.+... + .+..+++|+.|+|++|++++..|  +..+++|+.|+|++|.+++ +| .+..+++|+.|
T Consensus        41 ~L~~L~~L~l~~n~i~~l-~-~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~-l~-~l~~l~~L~~L  114 (605)
T 1m9s_A           41 ELNSIDQIIANNSDIKSV-Q-GIQYLPNVTKLFLNGNKLTDIKP--LTNLKNLGWLFLDENKIKD-LS-SLKDLKKLKSL  114 (605)
T ss_dssp             HHTTCCCCBCTTCCCCCC-T-TGGGCTTCCEEECTTSCCCCCGG--GGGCTTCCEEECCSSCCCC-CT-TSTTCTTCCEE
T ss_pred             cCCCCCEEECcCCCCCCC-h-HHccCCCCCEEEeeCCCCCCChh--hccCCCCCEEECcCCCCCC-Ch-hhccCCCCCEE
Confidence            344444444444444422 1 24444445555555554443322  4444455555555554443 11 34445555555


Q ss_pred             ECcCCcccccCchhhhhcCcCCcEEEccCCcccccCCcccCCCCCCCEEEccCCcCCCCCC
Q 036375          720 DLGNNRFSGNIPSLLGNGFVGLRILSLRSNAFSGEIPSKLSNLSSLQVLDLAENNLTGSIP  780 (1009)
Q Consensus       720 ~L~~N~l~~~ip~~l~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p  780 (1009)
                      +|++|.+.+ +|. +. .+++|+.|+|++|.+++.  ..+..+++|+.|+|++|++++..|
T Consensus       115 ~Ls~N~l~~-l~~-l~-~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~~~~  170 (605)
T 1m9s_A          115 SLEHNGISD-ING-LV-HLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP  170 (605)
T ss_dssp             ECTTSCCCC-CGG-GG-GCTTCSEEECCSSCCCCC--GGGGSCTTCSEEECCSSCCCCCGG
T ss_pred             EecCCCCCC-Ccc-cc-CCCccCEEECCCCccCCc--hhhcccCCCCEEECcCCcCCCchh
Confidence            555555442 222 22 245555555555555432  334555555555555555554433

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=99.74  E-value=2.2e-17  Score=169.95  Aligned_cols=138  Identities=27%  Similarity=0.280  Sum_probs=80.9

Q ss_pred             CccEEEccCCcCCCcCCchhhcCCCCccEEEccCCcccccCCcccccCCCCCeEEccCCcCCccCcCcccCCCCCCEEEC
Q 036375          594 EIELLDLSNNHFSGPIPQNISGSMPNLIFLSVSGNRLTGKIPGSIGEMQLLQVIDLSRNSISGSISSSIGNCTFLKVLDL  673 (1009)
Q Consensus       594 ~L~~L~Ls~n~l~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L  673 (1009)
                      .++.|++++|.+++..+...+..+++|++|++++|++++..+.+|.++++|++|++++|++++..+..|.++++|++|++
T Consensus        33 ~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L  112 (220)
T 2v70_A           33 YTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLENVQHKMFKGLESLKTLML  112 (220)
T ss_dssp             TCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCCCCGGGGTTCSSCCEEEC
T ss_pred             CCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCCccCccCHhHhcCCcCCCEEEC
Confidence            34556666666654444444555566666666666666555555666666666666666665555555556666666666


Q ss_pred             CCCcCcccCCccccCCCCCCEEEccCccccCCCchhhcCCCCCCEEECcCCcccccCc
Q 036375          674 SYSSLSGVIPASLGQLTRLQSLHLNNNKLTGNLPSSFQNLTSLETLDLGNNRFSGNIP  731 (1009)
Q Consensus       674 s~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~ip  731 (1009)
                      ++|++++..|..|..+++|++|+|++|++++..|..|..+++|++|++++|++.+..+
T Consensus       113 s~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c~  170 (220)
T 2v70_A          113 RSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFNCNCY  170 (220)
T ss_dssp             TTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCEECSGG
T ss_pred             CCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCCcCCCc
Confidence            6666665555555566666666666666665555555556666666666665554433

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=99.74  E-value=5.7e-18  Score=188.98  Aligned_cols=177  Identities=28%  Similarity=0.242  Sum_probs=96.7

Q ss_pred             CEEECCCCcCcccCCccccCCCCCCEEEccCccccCCCchhhc-CCCCCCEEECcCCcccccCchhhhhcCcCCcEEEcc
Q 036375          669 KVLDLSYSSLSGVIPASLGQLTRLQSLHLNNNKLTGNLPSSFQ-NLTSLETLDLGNNRFSGNIPSLLGNGFVGLRILSLR  747 (1009)
Q Consensus       669 ~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~-~l~~L~~L~L~~N~l~~~ip~~l~~~l~~L~~L~L~  747 (1009)
                      +.+++++++++. +|..+.  +.++.|+|++|++++..+..|. .+++|++|+|++|++++..|..+. .+++|+.|+|+
T Consensus        21 ~~l~c~~~~l~~-iP~~~~--~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~-~l~~L~~L~Ls   96 (361)
T 2xot_A           21 NILSCSKQQLPN-VPQSLP--SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFV-PVPNLRYLDLS   96 (361)
T ss_dssp             TEEECCSSCCSS-CCSSCC--TTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTT-TCTTCCEEECC
T ss_pred             CEEEeCCCCcCc-cCccCC--CCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhcc-CCCCCCEEECC
Confidence            466777777663 454332  3466666666666655555554 556666666666665532222222 34555555555


Q ss_pred             CCcccccCCcccCCCCCCCEEEccCCcCCCCCChhhhhhhhhhhccchhhhhhccccccceeeceEEEeecCCCCCCCCc
Q 036375          748 SNAFSGEIPSKLSNLSSLQVLDLAENNLTGSIPGSVGDLKAMAHVQNIVKYLLFGRYRGIYYEENLVINTKGSSKDTPRL  827 (1009)
Q Consensus       748 ~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  827 (1009)
                      +|++++..+..|..+++|++                                                            
T Consensus        97 ~N~l~~~~~~~~~~l~~L~~------------------------------------------------------------  116 (361)
T 2xot_A           97 SNHLHTLDEFLFSDLQALEV------------------------------------------------------------  116 (361)
T ss_dssp             SSCCCEECTTTTTTCTTCCE------------------------------------------------------------
T ss_pred             CCcCCcCCHHHhCCCcCCCE------------------------------------------------------------
Confidence            55554443444444444444                                                            


Q ss_pred             eeEEEccCCccCCCCCccccCcCCCCeEEccCCcccccCCCCc---cCCCCCCEEeCCCCcCCCCCcccccCCCC--CCe
Q 036375          828 FHFIDLSGNNLHGDFPTQLTKLVGLVVLNLSRNHIGGQIPENI---SGLHQLASLDLSSNNLSGGIPSSLSSLSF--LGY  902 (1009)
Q Consensus       828 l~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l---~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~--L~~  902 (1009)
                         |+|++|+|++..|..|.++++|+.|+|++|+|++..+..|   ..+++|+.|||++|+|++..+..+..++.  ++.
T Consensus       117 ---L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~~~l~~  193 (361)
T 2xot_A          117 ---LLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNG  193 (361)
T ss_dssp             ---EECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSCCCCCCHHHHHHSCHHHHTT
T ss_pred             ---EECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCCCCccCHHHhhhccHhhcce
Confidence               4555555554455555556666666666666665444444   44666666666666666555555655554  356


Q ss_pred             EeCCCCccee
Q 036375          903 INLSRNQLSG  912 (1009)
Q Consensus       903 L~ls~N~l~g  912 (1009)
                      |++++|++..
T Consensus       194 l~l~~N~~~C  203 (361)
T 2xot_A          194 LYLHNNPLEC  203 (361)
T ss_dssp             EECCSSCEEC
T ss_pred             EEecCCCccC
Confidence            6666666653

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=99.73  E-value=1.3e-17  Score=186.12  Aligned_cols=179  Identities=25%  Similarity=0.265  Sum_probs=153.0

Q ss_pred             CccEEEccCCcCCCcCCchhhcCCCCccEEEccCCcccccCCcccc-cCCCCCeEEccCCcCCccCcCcccCCCCCCEEE
Q 036375          594 EIELLDLSNNHFSGPIPQNISGSMPNLIFLSVSGNRLTGKIPGSIG-EMQLLQVIDLSRNSISGSISSSIGNCTFLKVLD  672 (1009)
Q Consensus       594 ~L~~L~Ls~n~l~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~-~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~  672 (1009)
                      .-+.++++++.+. .+|..+   .+.++.|++++|++++..+..+. ++++|++|++++|++++..+..|.++++|++|+
T Consensus        19 ~~~~l~c~~~~l~-~iP~~~---~~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~   94 (361)
T 2xot_A           19 ASNILSCSKQQLP-NVPQSL---PSYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLD   94 (361)
T ss_dssp             ETTEEECCSSCCS-SCCSSC---CTTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEE
T ss_pred             CCCEEEeCCCCcC-ccCccC---CCCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEE
Confidence            3468899998887 677644   35689999999999988888887 899999999999999988888899999999999


Q ss_pred             CCCCcCcccCCccccCCCCCCEEEccCccccCCCchhhcCCCCCCEEECcCCcccccCchhhh---hcCcCCcEEEccCC
Q 036375          673 LSYSSLSGVIPASLGQLTRLQSLHLNNNKLTGNLPSSFQNLTSLETLDLGNNRFSGNIPSLLG---NGFVGLRILSLRSN  749 (1009)
Q Consensus       673 Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~ip~~l~---~~l~~L~~L~L~~N  749 (1009)
                      |++|++++..+..|..+++|++|+|++|++++..|..|..+++|+.|+|++|.++ .+|..++   ..+++|+.|+|++|
T Consensus        95 Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~-~l~~~~~~~~~~l~~L~~L~L~~N  173 (361)
T 2xot_A           95 LSSNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQIS-RFPVELIKDGNKLPKLMLLDLSSN  173 (361)
T ss_dssp             CCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCC-SCCGGGTC----CTTCCEEECCSS
T ss_pred             CCCCcCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCC-eeCHHHhcCcccCCcCCEEECCCC
Confidence            9999999888888999999999999999999888889999999999999999998 6777654   34889999999999


Q ss_pred             cccccCCcccCCCCC--CCEEEccCCcCCC
Q 036375          750 AFSGEIPSKLSNLSS--LQVLDLAENNLTG  777 (1009)
Q Consensus       750 ~l~~~~p~~l~~l~~--L~~L~Ls~N~l~~  777 (1009)
                      ++++..+..+..++.  ++.|++++|++..
T Consensus       174 ~l~~l~~~~~~~l~~~~l~~l~l~~N~~~C  203 (361)
T 2xot_A          174 KLKKLPLTDLQKLPAWVKNGLYLHNNPLEC  203 (361)
T ss_dssp             CCCCCCHHHHHHSCHHHHTTEECCSSCEEC
T ss_pred             CCCccCHHHhhhccHhhcceEEecCCCccC
Confidence            998665566777776  4889999999874

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=99.73  E-value=1.1e-17  Score=197.62  Aligned_cols=190  Identities=28%  Similarity=0.380  Sum_probs=137.9

Q ss_pred             CCeEEccCCcCCccCcCcccCCCCCCEEECCCCcCcccCCccccCCCCCCEEEccCccccCCCchhhcCCCCCCEEECcC
Q 036375          644 LQVIDLSRNSISGSISSSIGNCTFLKVLDLSYSSLSGVIPASLGQLTRLQSLHLNNNKLTGNLPSSFQNLTSLETLDLGN  723 (1009)
Q Consensus       644 L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~  723 (1009)
                      +..+.+..+.+.+..+  +..++.|+.|++++|.+... | .+..+++|+.|+|++|++++..|  +..+++|+.|+|++
T Consensus        23 l~~l~l~~~~i~~~~~--~~~L~~L~~L~l~~n~i~~l-~-~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~   96 (605)
T 1m9s_A           23 TIKDNLKKKSVTDAVT--QNELNSIDQIIANNSDIKSV-Q-GIQYLPNVTKLFLNGNKLTDIKP--LTNLKNLGWLFLDE   96 (605)
T ss_dssp             HHHHHTTCSCTTSEEC--HHHHTTCCCCBCTTCCCCCC-T-TGGGCTTCCEEECTTSCCCCCGG--GGGCTTCCEEECCS
T ss_pred             HHHHhccCCCcccccc--hhcCCCCCEEECcCCCCCCC-h-HHccCCCCCEEEeeCCCCCCChh--hccCCCCCEEECcC
Confidence            4455666666665433  56778888889998888754 3 57888888888888888886544  78888888888888


Q ss_pred             CcccccCchhhhhcCcCCcEEEccCCcccccCCcccCCCCCCCEEEccCCcCCCCCChhhhhhhhhhhccchhhhhhccc
Q 036375          724 NRFSGNIPSLLGNGFVGLRILSLRSNAFSGEIPSKLSNLSSLQVLDLAENNLTGSIPGSVGDLKAMAHVQNIVKYLLFGR  803 (1009)
Q Consensus       724 N~l~~~ip~~l~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~~~~~~~~~~~~~  803 (1009)
                      |.+. .+| .+. .+++|+.|+|++|.+++ + ..+..+++|+.|+|++|++++.  ..+..++.|              
T Consensus        97 N~l~-~l~-~l~-~l~~L~~L~Ls~N~l~~-l-~~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L--------------  155 (605)
T 1m9s_A           97 NKIK-DLS-SLK-DLKKLKSLSLEHNGISD-I-NGLVHLPQLESLYLGNNKITDI--TVLSRLTKL--------------  155 (605)
T ss_dssp             SCCC-CCT-TST-TCTTCCEEECTTSCCCC-C-GGGGGCTTCSEEECCSSCCCCC--GGGGSCTTC--------------
T ss_pred             CCCC-CCh-hhc-cCCCCCEEEecCCCCCC-C-ccccCCCccCEEECCCCccCCc--hhhcccCCC--------------
Confidence            8887 344 343 47888888888888875 2 3477788888888888887764  345555544              


Q ss_pred             cccceeeceEEEeecCCCCCCCCceeEEEccCCccCCCCCccccCcCCCCeEEccCCcccccCCCCccCCCCCCEEeCCC
Q 036375          804 YRGIYYEENLVINTKGSSKDTPRLFHFIDLSGNNLHGDFPTQLTKLVGLVVLNLSRNHIGGQIPENISGLHQLASLDLSS  883 (1009)
Q Consensus       804 ~~~~~~~~~~~~~~~~~~~~~~~~l~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~  883 (1009)
                                               +.|+|++|.+++..|  +..+++|+.|+|++|+|++.  ..+..+++|+.|+|++
T Consensus       156 -------------------------~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~i~~l--~~l~~l~~L~~L~L~~  206 (605)
T 1m9s_A          156 -------------------------DTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISDL--RALAGLKNLDVLELFS  206 (605)
T ss_dssp             -------------------------SEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCBC--GGGTTCTTCSEEECCS
T ss_pred             -------------------------CEEECcCCcCCCchh--hccCCCCCEEECcCCCCCCC--hHHccCCCCCEEEccC
Confidence                                     677777777777666  77777777777777777764  3477777777777777


Q ss_pred             CcCCCC
Q 036375          884 NNLSGG  889 (1009)
Q Consensus       884 N~l~~~  889 (1009)
                      |++++.
T Consensus       207 N~l~~~  212 (605)
T 1m9s_A          207 QECLNK  212 (605)
T ss_dssp             EEEECC
T ss_pred             CcCcCC
Confidence            777764

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=99.72  E-value=7.6e-18  Score=169.38  Aligned_cols=133  Identities=26%  Similarity=0.330  Sum_probs=100.4

Q ss_pred             cEEEccCCcccccCCcccCCCCCCCEEEccCCcCCCCCCh-hhhhhhhhhhccchhhhhhccccccceeeceEEEeecCC
Q 036375          742 RILSLRSNAFSGEIPSKLSNLSSLQVLDLAENNLTGSIPG-SVGDLKAMAHVQNIVKYLLFGRYRGIYYEENLVINTKGS  820 (1009)
Q Consensus       742 ~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~-~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  820 (1009)
                      +.+++++|.++ .+|..+..  +|++|++++|++++..|. .++.++.|                               
T Consensus        11 ~~l~~s~~~l~-~ip~~~~~--~l~~L~l~~n~i~~~~~~~~~~~l~~L-------------------------------   56 (192)
T 1w8a_A           11 TTVDCTGRGLK-EIPRDIPL--HTTELLLNDNELGRISSDGLFGRLPHL-------------------------------   56 (192)
T ss_dssp             TEEECTTSCCS-SCCSCCCT--TCSEEECCSCCCCSBCCSCSGGGCTTC-------------------------------
T ss_pred             CEEEcCCCCcC-cCccCCCC--CCCEEECCCCcCCccCCccccccCCCC-------------------------------
Confidence            45555555553 45544432  677777777777665553 35666655                               


Q ss_pred             CCCCCCceeEEEccCCccCCCCCccccCcCCCCeEEccCCcccccCCCCccCCCCCCEEeCCCCcCCCCCcccccCCCCC
Q 036375          821 SKDTPRLFHFIDLSGNNLHGDFPTQLTKLVGLVVLNLSRNHIGGQIPENISGLHQLASLDLSSNNLSGGIPSSLSSLSFL  900 (1009)
Q Consensus       821 ~~~~~~~l~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L  900 (1009)
                              +.|+|++|+|++..|..|.++++|++|+|++|+|++.+|..|+++++|++|+|++|++++.+|..+..+++|
T Consensus        57 --------~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L  128 (192)
T 1w8a_A           57 --------VKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSL  128 (192)
T ss_dssp             --------CEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTC
T ss_pred             --------CEEECCCCCCCCcCHhHcCCcccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCC
Confidence                    777788888887778888888888888888888888888888888888888888888888888888888888


Q ss_pred             CeEeCCCCcceecCCC
Q 036375          901 GYINLSRNQLSGKIPF  916 (1009)
Q Consensus       901 ~~L~ls~N~l~g~ip~  916 (1009)
                      ++|++++|+++|.+|.
T Consensus       129 ~~L~L~~N~l~c~c~l  144 (192)
T 1w8a_A          129 TSLNLASNPFNCNCHL  144 (192)
T ss_dssp             CEEECTTCCBCCSGGG
T ss_pred             CEEEeCCCCccCcCcc
Confidence            8888888888887663

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.72  E-value=1.5e-19  Score=212.37  Aligned_cols=203  Identities=24%  Similarity=0.235  Sum_probs=117.2

Q ss_pred             cCCCCCeEEccCCcCCccCcCcccCCCCCCEEECCCCcCcccCCccccCCCCCCEEEccCccccCCCchhhcCCCCCCEE
Q 036375          640 EMQLLQVIDLSRNSISGSISSSIGNCTFLKVLDLSYSSLSGVIPASLGQLTRLQSLHLNNNKLTGNLPSSFQNLTSLETL  719 (1009)
Q Consensus       640 ~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L  719 (1009)
                      .++.|+.|++++|+++ .+|..+++|++|+.|++++|......|..           +..+...+..|..+..+++|+.|
T Consensus       347 ~~~~L~~L~Ls~n~L~-~Lp~~i~~l~~L~~L~l~~n~~l~~l~~l-----------l~~~~~~~~~~~~l~~l~~L~~L  414 (567)
T 1dce_A          347 TDEQLFRCELSVEKST-VLQSELESCKELQELEPENKWCLLTIILL-----------MRALDPLLYEKETLQYFSTLKAV  414 (567)
T ss_dssp             TTTTSSSCCCCHHHHH-HHHHHHHHHHHHHHHCTTCHHHHHHHHHH-----------HHHHCTGGGHHHHHHHHHHHHHH
T ss_pred             cCccceeccCChhhHH-hhHHHHHHHHHHHHhccccchhhhhHHHH-----------HHhcccccCCHHHHHHHHhcccC
Confidence            3455555555555554 44555555555555555444311111100           00111344556666666666666


Q ss_pred             E-CcCCcccccCchhhhhcCcCCcEEEccCCcccccCCcccCCCCCCCEEEccCCcCCCCCChhhhhhhhhhhccchhhh
Q 036375          720 D-LGNNRFSGNIPSLLGNGFVGLRILSLRSNAFSGEIPSKLSNLSSLQVLDLAENNLTGSIPGSVGDLKAMAHVQNIVKY  798 (1009)
Q Consensus       720 ~-L~~N~l~~~ip~~l~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~~~~~~~~  798 (1009)
                      + ++.|.+.            .|+.+.+++|.+++..+      ..|+.|++++|++++ +|. ++.+++|         
T Consensus       415 ~~l~~n~~~------------~L~~l~l~~n~i~~l~~------~~L~~L~Ls~n~l~~-lp~-~~~l~~L---------  465 (567)
T 1dce_A          415 DPMRAAYLD------------DLRSKFLLENSVLKMEY------ADVRVLHLAHKDLTV-LCH-LEQLLLV---------  465 (567)
T ss_dssp             CGGGHHHHH------------HHHHHHHHHHHHHHHHH------TTCSEEECTTSCCSS-CCC-GGGGTTC---------
T ss_pred             cchhhcccc------------hhhhhhhhcccccccCc------cCceEEEecCCCCCC-CcC-ccccccC---------
Confidence            6 4544332            22223334444442211      136667777777765 454 6665555         


Q ss_pred             hhccccccceeeceEEEeecCCCCCCCCceeEEEccCCccCCCCCccccCcCCCCeEEccCCcccccCCCCccCCCCCCE
Q 036375          799 LLFGRYRGIYYEENLVINTKGSSKDTPRLFHFIDLSGNNLHGDFPTQLTKLVGLVVLNLSRNHIGGQIPENISGLHQLAS  878 (1009)
Q Consensus       799 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~  878 (1009)
                                                    +.|+|++|+|+ .+|..++++++|+.|+|++|+|++ +| .++++++|+.
T Consensus       466 ------------------------------~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~~-lp-~l~~l~~L~~  512 (567)
T 1dce_A          466 ------------------------------THLDLSHNRLR-ALPPALAALRCLEVLQASDNALEN-VD-GVANLPRLQE  512 (567)
T ss_dssp             ------------------------------CEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCC-CG-GGTTCSSCCE
T ss_pred             ------------------------------cEeecCccccc-ccchhhhcCCCCCEEECCCCCCCC-Cc-ccCCCCCCcE
Confidence                                          66777777777 667777777777777777777776 44 6777777777


Q ss_pred             EeCCCCcCCCCC-cccccCCCCCCeEeCCCCcceecCCC
Q 036375          879 LDLSSNNLSGGI-PSSLSSLSFLGYINLSRNQLSGKIPF  916 (1009)
Q Consensus       879 L~Ls~N~l~~~i-p~~l~~l~~L~~L~ls~N~l~g~ip~  916 (1009)
                      |+|++|+|++.+ |..++.+++|++|++++|++++.+|.
T Consensus       513 L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~  551 (567)
T 1dce_A          513 LLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGI  551 (567)
T ss_dssp             EECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSC
T ss_pred             EECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCccH
Confidence            777777777665 77777777777777777777776654

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=99.71  E-value=7.6e-17  Score=165.88  Aligned_cols=133  Identities=28%  Similarity=0.326  Sum_probs=65.9

Q ss_pred             CCeEEccCCcCCccCcCcccCCCCCCEEECCCCcCcccCCccccCCCCCCEEEccCccccCCCchhhcCCCCCCEEECcC
Q 036375          644 LQVIDLSRNSISGSISSSIGNCTFLKVLDLSYSSLSGVIPASLGQLTRLQSLHLNNNKLTGNLPSSFQNLTSLETLDLGN  723 (1009)
Q Consensus       644 L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~  723 (1009)
                      ++.|++++|++++..+..|..+++|++|+|++|++++..|..|.++++|++|+|++|++++..+..|..+++|++|+|++
T Consensus        34 l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~  113 (220)
T 2v9t_B           34 ITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKITELPKSLFEGLFSLQLLLLNA  113 (220)
T ss_dssp             CCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred             CCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCcCCccCHhHccCCCCCCEEECCC
Confidence            44444444444444333444444444444444444444444444444444444444444433333344445555555555


Q ss_pred             CcccccCchhhhhcCcCCcEEEccCCcccccCCcccCCCCCCCEEEccCCcCCC
Q 036375          724 NRFSGNIPSLLGNGFVGLRILSLRSNAFSGEIPSKLSNLSSLQVLDLAENNLTG  777 (1009)
Q Consensus       724 N~l~~~ip~~l~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~  777 (1009)
                      |++++..|..+. .+++|+.|+|++|++++..+..+..+++|+.|++++|++..
T Consensus       114 N~l~~~~~~~~~-~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c  166 (220)
T 2v9t_B          114 NKINCLRVDAFQ-DLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFIC  166 (220)
T ss_dssp             SCCCCCCTTTTT-TCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCEEC
T ss_pred             CCCCEeCHHHcC-CCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCcCC
Confidence            555433333333 35555555555555554444556666667777777776653

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=99.70  E-value=2.3e-16  Score=163.52  Aligned_cols=137  Identities=24%  Similarity=0.236  Sum_probs=99.4

Q ss_pred             CCCCeEEccCCcCCccCcCcccCCCCCCEEECCCCcCcccCCccccCCCCCCEEEccCccccCCCchhhcCCCCCCEEEC
Q 036375          642 QLLQVIDLSRNSISGSISSSIGNCTFLKVLDLSYSSLSGVIPASLGQLTRLQSLHLNNNKLTGNLPSSFQNLTSLETLDL  721 (1009)
Q Consensus       642 ~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L  721 (1009)
                      ++|++|++++|++++..|..|..+++|++|+|++|++++..+..|..+++|++|+|++|++++..+..|..+++|++|+|
T Consensus        40 ~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L  119 (229)
T 3e6j_A           40 TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLTVLPSAVFDRLVHLKELFM  119 (229)
T ss_dssp             TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred             CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCCCcCCccChhHhCcchhhCeEec
Confidence            55666666666666666666666777777777777776555566667777777777777777665666677777777777


Q ss_pred             cCCcccccCchhhhhcCcCCcEEEccCCcccccCCcccCCCCCCCEEEccCCcCCCCCC
Q 036375          722 GNNRFSGNIPSLLGNGFVGLRILSLRSNAFSGEIPSKLSNLSSLQVLDLAENNLTGSIP  780 (1009)
Q Consensus       722 ~~N~l~~~ip~~l~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p  780 (1009)
                      ++|+++ .+|..+. .+++|+.|++++|++++..+..+..+++|+.|++++|++.+..+
T Consensus       120 s~N~l~-~lp~~~~-~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~  176 (229)
T 3e6j_A          120 CCNKLT-ELPRGIE-RLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPWDCECR  176 (229)
T ss_dssp             CSSCCC-SCCTTGG-GCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCBCTTBG
T ss_pred             cCCccc-ccCcccc-cCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCCccCCcc
Confidence            777777 6777665 47888888888888876666678888899999999999886543

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=99.70  E-value=9.1e-18  Score=203.76  Aligned_cols=224  Identities=23%  Similarity=0.257  Sum_probs=124.3

Q ss_pred             CCccEEEccCCcCCCcCCchhhcCCCCccEEEccCCcccccCCcccccCCCCCeEEccCCcCCccCcCcccCCCCCCEEE
Q 036375          593 VEIELLDLSNNHFSGPIPQNISGSMPNLIFLSVSGNRLTGKIPGSIGEMQLLQVIDLSRNSISGSISSSIGNCTFLKVLD  672 (1009)
Q Consensus       593 ~~L~~L~Ls~n~l~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~  672 (1009)
                      +.++.|++.+|.+.. ++.      ..++.++|+.|.+.              .++++.|.+. ..+..+..++.|+.|+
T Consensus       173 ~~~~~l~L~~n~~~~-~~~------~~l~~l~Ls~~~i~--------------~~~~~~n~~~-~~~~~~~~l~~L~~L~  230 (727)
T 4b8c_D          173 PLTPKIELFANGKDE-ANQ------ALLQHKKLSQYSID--------------EDDDIENRMV-MPKDSKYDDQLWHALD  230 (727)
T ss_dssp             -----------------------------------------------------------------------CCCCCCEEE
T ss_pred             CccceEEeeCCCCCc-chh------hHhhcCccCccccc--------------Ccccccccee-cChhhhccCCCCcEEE
Confidence            345666666665542 221      23444455544433              3344455555 5677889999999999


Q ss_pred             CCCCcCcccCCccccCCCCCCEEEccCccccCCCchhhcCCCCCCEEECcCCcccccCchhhhhcCcCCcEEEccCCccc
Q 036375          673 LSYSSLSGVIPASLGQLTRLQSLHLNNNKLTGNLPSSFQNLTSLETLDLGNNRFSGNIPSLLGNGFVGLRILSLRSNAFS  752 (1009)
Q Consensus       673 Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~ip~~l~~~l~~L~~L~L~~N~l~  752 (1009)
                      |++|++. .+|..+..+++|++|+|++|.++ .+|..|..+++|++|+|++|.++ .+|..+.. +++|+.|+|++|.++
T Consensus       231 Ls~n~l~-~l~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~-l~~L~~L~L~~N~l~  306 (727)
T 4b8c_D          231 LSNLQIF-NISANIFKYDFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLT-SLPAELGS-CFQLKYFYFFDNMVT  306 (727)
T ss_dssp             CTTSCCS-CCCGGGGGCCSCSCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSCCS-SCCSSGGG-GTTCSEEECCSSCCC
T ss_pred             CCCCCCC-CCChhhcCCCCCCEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCcCC-ccChhhcC-CCCCCEEECCCCCCC
Confidence            9999998 66777778999999999999999 78999999999999999999998 88998874 999999999999997


Q ss_pred             ccCCcccCCCCCCCEEEccCCcCCCCCChhhhhhhhhhhccchhhhhhccccccceeeceEEEeecCCCCCCCCceeEEE
Q 036375          753 GEIPSKLSNLSSLQVLDLAENNLTGSIPGSVGDLKAMAHVQNIVKYLLFGRYRGIYYEENLVINTKGSSKDTPRLFHFID  832 (1009)
Q Consensus       753 ~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~  832 (1009)
                       .+|..|..+++|++|+|++|++++.+|..+..+....                                      ..++
T Consensus       307 -~lp~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~~--------------------------------------~~l~  347 (727)
T 4b8c_D          307 -TLPWEFGNLCNLQFLGVEGNPLEKQFLKILTEKSVTG--------------------------------------LIFY  347 (727)
T ss_dssp             -CCCSSTTSCTTCCCEECTTSCCCSHHHHHHHHHHHHH--------------------------------------HHHH
T ss_pred             -ccChhhhcCCCccEEeCCCCccCCCChHHHhhcchhh--------------------------------------hHHh
Confidence             7888899999999999999999999998887764331                                      2357


Q ss_pred             ccCCccCCCCCccccCcCCCCeEEccCC--------cccccCCCCccCCCCCCEEeCCCCcCC
Q 036375          833 LSGNNLHGDFPTQLTKLVGLVVLNLSRN--------HIGGQIPENISGLHQLASLDLSSNNLS  887 (1009)
Q Consensus       833 Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N--------~l~~~~p~~l~~l~~L~~L~Ls~N~l~  887 (1009)
                      |++|.++|.+|..+      +.|++++|        .+.+.++..+..+..++...+++|.+.
T Consensus       348 l~~N~l~~~~p~~l------~~l~l~~n~~~~~~~~~l~~~~~~~~~~l~~~~~~~ls~Nil~  404 (727)
T 4b8c_D          348 LRDNRPEIPLPHER------RFIEINTDGEPQREYDSLQQSTEHLATDLAKRTFTVLSYNTLC  404 (727)
T ss_dssp             HHHCCCCCCCCCC-----------------------------------------------CCC
T ss_pred             hccCcccCcCcccc------ceeEeecccccccccCCccccccchhhcccccceeeeeccccc
Confidence            88999999888754      45667766        445555555666677777777888775

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.69  E-value=1.1e-18  Score=204.93  Aligned_cols=196  Identities=21%  Similarity=0.209  Sum_probs=131.3

Q ss_pred             cCCCCCCEEEccCccccCCCchhhcCCCCCCEEECcCCcccccCchhhhhcCcCCcEEEccCCcccccCCcccCCCCCCC
Q 036375          687 GQLTRLQSLHLNNNKLTGNLPSSFQNLTSLETLDLGNNRFSGNIPSLLGNGFVGLRILSLRSNAFSGEIPSKLSNLSSLQ  766 (1009)
Q Consensus       687 ~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~ip~~l~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~  766 (1009)
                      ..++.|+.|+|++|+++ .+|..++.+++|+.|++++|.....+|..+.            .+...+.+|..+..+++|+
T Consensus       346 ~~~~~L~~L~Ls~n~L~-~Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll~------------~~~~~~~~~~~l~~l~~L~  412 (567)
T 1dce_A          346 ATDEQLFRCELSVEKST-VLQSELESCKELQELEPENKWCLLTIILLMR------------ALDPLLYEKETLQYFSTLK  412 (567)
T ss_dssp             STTTTSSSCCCCHHHHH-HHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH------------HHCTGGGHHHHHHHHHHHH
T ss_pred             ccCccceeccCChhhHH-hhHHHHHHHHHHHHhccccchhhhhHHHHHH------------hcccccCCHHHHHHHHhcc
Confidence            34566666666666665 5666666666676666655542212221111            1123345555566666666


Q ss_pred             EEE-ccCCcCCCCCChhhhhhhhhhhccchhhhhhccccccceeeceEEEeecCCCCCCCCceeEEEccCCccCCCCCcc
Q 036375          767 VLD-LAENNLTGSIPGSVGDLKAMAHVQNIVKYLLFGRYRGIYYEENLVINTKGSSKDTPRLFHFIDLSGNNLHGDFPTQ  845 (1009)
Q Consensus       767 ~L~-Ls~N~l~~~~p~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~Ls~N~l~~~~p~~  845 (1009)
                      .|+ ++.|.+.        +++.+....+....+.                        +..++.|+|++|+|++ +|. 
T Consensus       413 ~L~~l~~n~~~--------~L~~l~l~~n~i~~l~------------------------~~~L~~L~Ls~n~l~~-lp~-  458 (567)
T 1dce_A          413 AVDPMRAAYLD--------DLRSKFLLENSVLKME------------------------YADVRVLHLAHKDLTV-LCH-  458 (567)
T ss_dssp             HHCGGGHHHHH--------HHHHHHHHHHHHHHHH------------------------HTTCSEEECTTSCCSS-CCC-
T ss_pred             cCcchhhcccc--------hhhhhhhhcccccccC------------------------ccCceEEEecCCCCCC-CcC-
Confidence            666 5555432        2222111000000000                        0024889999999997 676 


Q ss_pred             ccCcCCCCeEEccCCcccccCCCCccCCCCCCEEeCCCCcCCCCCcccccCCCCCCeEeCCCCcceecC-CCC-CCCCcc
Q 036375          846 LTKLVGLVVLNLSRNHIGGQIPENISGLHQLASLDLSSNNLSGGIPSSLSSLSFLGYINLSRNQLSGKI-PFE-GHMTTF  923 (1009)
Q Consensus       846 l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~ls~N~l~g~i-p~~-~~~~~~  923 (1009)
                      ++++++|+.|+|++|+|+ .+|..++++++|+.|+|++|+|++ +| .++.+++|++|++++|++++.+ |.. ..+..+
T Consensus       459 ~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~~-lp-~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L  535 (567)
T 1dce_A          459 LEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALEN-VD-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRL  535 (567)
T ss_dssp             GGGGTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCC-CG-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTC
T ss_pred             ccccccCcEeecCccccc-ccchhhhcCCCCCEEECCCCCCCC-Cc-ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCC
Confidence            999999999999999999 789999999999999999999997 77 8999999999999999999986 653 445556


Q ss_pred             cCCcCCCCC
Q 036375          924 DASSFAGNP  932 (1009)
Q Consensus       924 ~~~~~~~n~  932 (1009)
                      ....+.+|+
T Consensus       536 ~~L~L~~N~  544 (567)
T 1dce_A          536 VLLNLQGNS  544 (567)
T ss_dssp             CEEECTTSG
T ss_pred             CEEEecCCc
Confidence            666677774

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=99.69  E-value=5e-17  Score=164.34  Aligned_cols=79  Identities=18%  Similarity=0.252  Sum_probs=50.2

Q ss_pred             eEEEccCCccCCCCCccccCcCCCCeEEccCCc-ccccCCCCccCCCCCCEEeCCCCcCCCCCcccccCCCCCCeEeCCC
Q 036375          829 HFIDLSGNNLHGDFPTQLTKLVGLVVLNLSRNH-IGGQIPENISGLHQLASLDLSSNNLSGGIPSSLSSLSFLGYINLSR  907 (1009)
Q Consensus       829 ~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~-l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~ls~  907 (1009)
                      +.|+|++|++++..|..++.+++|++|++++|+ ++ .+| .+..+++|++|++++|++++. + .+..+++|++|++++
T Consensus       115 ~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~-~~~-~l~~l~~L~~L~l~~n~i~~~-~-~l~~l~~L~~L~l~~  190 (197)
T 4ezg_A          115 TLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAIT-DIM-PLKTLPELKSLNIQFDGVHDY-R-GIEDFPKLNQLYAFS  190 (197)
T ss_dssp             CEEECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCC-CCG-GGGGCSSCCEEECTTBCCCCC-T-TGGGCSSCCEEEECB
T ss_pred             CEEEecCCccCcHhHHHHhhCCCCCEEEccCCCCcc-ccH-hhcCCCCCCEEECCCCCCcCh-H-HhccCCCCCEEEeeC
Confidence            555555555555555666666677777777776 44 334 567777777777777777753 3 667777777777777


Q ss_pred             Ccce
Q 036375          908 NQLS  911 (1009)
Q Consensus       908 N~l~  911 (1009)
                      |++.
T Consensus       191 N~i~  194 (197)
T 4ezg_A          191 QTIG  194 (197)
T ss_dssp             C---
T ss_pred             cccC
Confidence            7764

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=99.69  E-value=7.1e-18  Score=204.68  Aligned_cols=227  Identities=22%  Similarity=0.280  Sum_probs=129.0

Q ss_pred             CCccEEEccCCcccccCCcccccCCCCCeEEccCCcCCccCcCcccCCCCCCEEECCCCcCcccCCccccCCCCCCEEEc
Q 036375          618 PNLIFLSVSGNRLTGKIPGSIGEMQLLQVIDLSRNSISGSISSSIGNCTFLKVLDLSYSSLSGVIPASLGQLTRLQSLHL  697 (1009)
Q Consensus       618 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L  697 (1009)
                      +.++.|++.+|.+... +     ...|+.++|+.|.+.              .++++.|++. ..|..+..++.|+.|+|
T Consensus       173 ~~~~~l~L~~n~~~~~-~-----~~~l~~l~Ls~~~i~--------------~~~~~~n~~~-~~~~~~~~l~~L~~L~L  231 (727)
T 4b8c_D          173 PLTPKIELFANGKDEA-N-----QALLQHKKLSQYSID--------------EDDDIENRMV-MPKDSKYDDQLWHALDL  231 (727)
T ss_dssp             ----------------------------------------------------------------------CCCCCCEEEC
T ss_pred             CccceEEeeCCCCCcc-h-----hhHhhcCccCccccc--------------Ccccccccee-cChhhhccCCCCcEEEC
Confidence            3455666666555532 1     122444555555443              2344456655 56788999999999999


Q ss_pred             cCccccCCCchhhcCCCCCCEEECcCCcccccCchhhhhcCcCCcEEEccCCcccccCCcccCCCCCCCEEEccCCcCCC
Q 036375          698 NNNKLTGNLPSSFQNLTSLETLDLGNNRFSGNIPSLLGNGFVGLRILSLRSNAFSGEIPSKLSNLSSLQVLDLAENNLTG  777 (1009)
Q Consensus       698 ~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~ip~~l~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~  777 (1009)
                      ++|.+. .+|..+..+++|++|+|++|.++ .+|..+. .+++|+.|+|++|.++ .+|..+..+++|++|+|++|.|+ 
T Consensus       232 s~n~l~-~l~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~-~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~-  306 (727)
T 4b8c_D          232 SNLQIF-NISANIFKYDFLTRLYLNGNSLT-ELPAEIK-NLSNLRVLDLSHNRLT-SLPAELGSCFQLKYFYFFDNMVT-  306 (727)
T ss_dssp             TTSCCS-CCCGGGGGCCSCSCCBCTTSCCS-CCCGGGG-GGTTCCEEECTTSCCS-SCCSSGGGGTTCSEEECCSSCCC-
T ss_pred             CCCCCC-CCChhhcCCCCCCEEEeeCCcCc-ccChhhh-CCCCCCEEeCcCCcCC-ccChhhcCCCCCCEEECCCCCCC-
Confidence            999998 67878889999999999999999 9998887 4999999999999999 88999999999999999999997 


Q ss_pred             CCChhhhhhhhhhhccchhhhhhccccccceeeceEEEeecCCCCCCCCceeEEEccCCccCCCCCccccCcCCC-CeEE
Q 036375          778 SIPGSVGDLKAMAHVQNIVKYLLFGRYRGIYYEENLVINTKGSSKDTPRLFHFIDLSGNNLHGDFPTQLTKLVGL-VVLN  856 (1009)
Q Consensus       778 ~~p~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~Ls~N~l~~~~p~~l~~l~~L-~~L~  856 (1009)
                      .+|..|+++++|                                       +.|+|++|.|++.+|..+..+... ..|+
T Consensus       307 ~lp~~~~~l~~L---------------------------------------~~L~L~~N~l~~~~p~~~~~~~~~~~~l~  347 (727)
T 4b8c_D          307 TLPWEFGNLCNL---------------------------------------QFLGVEGNPLEKQFLKILTEKSVTGLIFY  347 (727)
T ss_dssp             CCCSSTTSCTTC---------------------------------------CCEECTTSCCCSHHHHHHHHHHHHHHHHH
T ss_pred             ccChhhhcCCCc---------------------------------------cEEeCCCCccCCCChHHHhhcchhhhHHh
Confidence            778889888887                                       889999999999999988765322 3489


Q ss_pred             ccCCcccccCCCCccCCCCCCEEeCCCC--------cCCCCCcccccCCCCCCeEeCCCCcceecCC
Q 036375          857 LSRNHIGGQIPENISGLHQLASLDLSSN--------NLSGGIPSSLSSLSFLGYINLSRNQLSGKIP  915 (1009)
Q Consensus       857 Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N--------~l~~~ip~~l~~l~~L~~L~ls~N~l~g~ip  915 (1009)
                      |++|.++|.+|..      |+.|++++|        .+.+.++..+.++..+....+++|-+.+...
T Consensus       348 l~~N~l~~~~p~~------l~~l~l~~n~~~~~~~~~l~~~~~~~~~~l~~~~~~~ls~Nil~~~~~  408 (727)
T 4b8c_D          348 LRDNRPEIPLPHE------RRFIEINTDGEPQREYDSLQQSTEHLATDLAKRTFTVLSYNTLCQHYA  408 (727)
T ss_dssp             HHHCCCCCCCCCC-----------------------------------------------CCCGGGC
T ss_pred             hccCcccCcCccc------cceeEeecccccccccCCccccccchhhcccccceeeeeccccccccC
Confidence            9999999999875      456677777        5566666667778888889999999875544

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=99.68  E-value=4e-17  Score=173.01  Aligned_cols=168  Identities=22%  Similarity=0.318  Sum_probs=96.7

Q ss_pred             CCCEEEccCccccCCCchhhcCCCCCCEEECcCCcccccCchhhhhcCcCCcEEEccCCcccccCCcccCCCCCCCEEEc
Q 036375          691 RLQSLHLNNNKLTGNLPSSFQNLTSLETLDLGNNRFSGNIPSLLGNGFVGLRILSLRSNAFSGEIPSKLSNLSSLQVLDL  770 (1009)
Q Consensus       691 ~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~ip~~l~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L  770 (1009)
                      +++.+++++|.+++. + .+..+++|++|++++|.++ .+| .+. .+++|+.|++++|++++..+  +..+++|++|++
T Consensus        20 ~l~~l~l~~~~i~~~-~-~~~~l~~L~~L~l~~n~i~-~l~-~l~-~l~~L~~L~L~~N~i~~~~~--l~~l~~L~~L~L   92 (263)
T 1xeu_A           20 NAVKQNLGKQSVTDL-V-SQKELSGVQNFNGDNSNIQ-SLA-GMQ-FFTNLKELHLSHNQISDLSP--LKDLTKLEELSV   92 (263)
T ss_dssp             HHHHHHHTCSCTTSE-E-CHHHHTTCSEEECTTSCCC-CCT-TGG-GCTTCCEEECCSSCCCCCGG--GTTCSSCCEEEC
T ss_pred             HHHHHHhcCCCcccc-c-chhhcCcCcEEECcCCCcc-cch-HHh-hCCCCCEEECCCCccCCChh--hccCCCCCEEEC
Confidence            344444444444422 1 3444455555555555544 344 222 25555555555555553322  555556666666


Q ss_pred             cCCcCCCCCChhhhhhhhhhhccchhhhhhccccccceeeceEEEeecCCCCCCCCceeEEEccCCccCCCCCccccCcC
Q 036375          771 AENNLTGSIPGSVGDLKAMAHVQNIVKYLLFGRYRGIYYEENLVINTKGSSKDTPRLFHFIDLSGNNLHGDFPTQLTKLV  850 (1009)
Q Consensus       771 s~N~l~~~~p~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~Ls~N~l~~~~p~~l~~l~  850 (1009)
                      ++|++++. |....  +                                       .++.|+|++|++++.  +.+..++
T Consensus        93 ~~N~l~~l-~~~~~--~---------------------------------------~L~~L~L~~N~l~~~--~~l~~l~  128 (263)
T 1xeu_A           93 NRNRLKNL-NGIPS--A---------------------------------------CLSRLFLDNNELRDT--DSLIHLK  128 (263)
T ss_dssp             CSSCCSCC-TTCCC--S---------------------------------------SCCEEECCSSCCSBS--GGGTTCT
T ss_pred             CCCccCCc-Ccccc--C---------------------------------------cccEEEccCCccCCC--hhhcCcc
Confidence            66655542 21100  1                                       225666666666653  2467777


Q ss_pred             CCCeEEccCCcccccCCCCccCCCCCCEEeCCCCcCCCCCcccccCCCCCCeEeCCCCcceec
Q 036375          851 GLVVLNLSRNHIGGQIPENISGLHQLASLDLSSNNLSGGIPSSLSSLSFLGYINLSRNQLSGK  913 (1009)
Q Consensus       851 ~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~ls~N~l~g~  913 (1009)
                      +|+.|+|++|++++. | .++.+++|+.|++++|++++.  ..+..+++|++|++++|++++.
T Consensus       129 ~L~~L~Ls~N~i~~~-~-~l~~l~~L~~L~L~~N~i~~~--~~l~~l~~L~~L~l~~N~~~~~  187 (263)
T 1xeu_A          129 NLEILSIRNNKLKSI-V-MLGFLSKLEVLDLHGNEITNT--GGLTRLKKVNWIDLTGQKCVNE  187 (263)
T ss_dssp             TCCEEECTTSCCCBC-G-GGGGCTTCCEEECTTSCCCBC--TTSTTCCCCCEEEEEEEEEECC
T ss_pred             cccEEECCCCcCCCC-h-HHccCCCCCEEECCCCcCcch--HHhccCCCCCEEeCCCCcccCC
Confidence            777777777777765 2 577777788888888877765  5677777888888888877765

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=99.68  E-value=1.5e-17  Score=176.25  Aligned_cols=123  Identities=24%  Similarity=0.372  Sum_probs=60.3

Q ss_pred             CCCeEEccCCcCCccCcCcccCCCCCCEEECCCCcCcccCCccccCCCCCCEEEccCccccCCCchhhcCCCCCCEEECc
Q 036375          643 LLQVIDLSRNSISGSISSSIGNCTFLKVLDLSYSSLSGVIPASLGQLTRLQSLHLNNNKLTGNLPSSFQNLTSLETLDLG  722 (1009)
Q Consensus       643 ~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~  722 (1009)
                      ++..+++++|.+++..  .+..+++|++|++++|+++. +| .+..+++|++|++++|++++..+  +..+++|+.|+++
T Consensus        20 ~l~~l~l~~~~i~~~~--~~~~l~~L~~L~l~~n~i~~-l~-~l~~l~~L~~L~L~~N~i~~~~~--l~~l~~L~~L~L~   93 (263)
T 1xeu_A           20 NAVKQNLGKQSVTDLV--SQKELSGVQNFNGDNSNIQS-LA-GMQFFTNLKELHLSHNQISDLSP--LKDLTKLEELSVN   93 (263)
T ss_dssp             HHHHHHHTCSCTTSEE--CHHHHTTCSEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCCCGG--GTTCSSCCEEECC
T ss_pred             HHHHHHhcCCCccccc--chhhcCcCcEEECcCCCccc-ch-HHhhCCCCCEEECCCCccCCChh--hccCCCCCEEECC
Confidence            3444444555544322  34445555555555555542 22 34555555555555555553322  5555555555555


Q ss_pred             CCcccccCchhhhhcCcCCcEEEccCCcccccCCcccCCCCCCCEEEccCCcCCC
Q 036375          723 NNRFSGNIPSLLGNGFVGLRILSLRSNAFSGEIPSKLSNLSSLQVLDLAENNLTG  777 (1009)
Q Consensus       723 ~N~l~~~ip~~l~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~  777 (1009)
                      +|+++ .+|...   .++|+.|++++|++++. + .+..+++|+.|++++|++++
T Consensus        94 ~N~l~-~l~~~~---~~~L~~L~L~~N~l~~~-~-~l~~l~~L~~L~Ls~N~i~~  142 (263)
T 1xeu_A           94 RNRLK-NLNGIP---SACLSRLFLDNNELRDT-D-SLIHLKNLEILSIRNNKLKS  142 (263)
T ss_dssp             SSCCS-CCTTCC---CSSCCEEECCSSCCSBS-G-GGTTCTTCCEEECTTSCCCB
T ss_pred             CCccC-CcCccc---cCcccEEEccCCccCCC-h-hhcCcccccEEECCCCcCCC
Confidence            55554 233221   14555555555555432 2 35555555555555555554

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=99.68  E-value=1.1e-16  Score=160.92  Aligned_cols=132  Identities=25%  Similarity=0.299  Sum_probs=109.9

Q ss_pred             CEEECcCCcccccCchhhhhcCcCCcEEEccCCcccccCCc-ccCCCCCCCEEEccCCcCCCCCChhhhhhhhhhhccch
Q 036375          717 ETLDLGNNRFSGNIPSLLGNGFVGLRILSLRSNAFSGEIPS-KLSNLSSLQVLDLAENNLTGSIPGSVGDLKAMAHVQNI  795 (1009)
Q Consensus       717 ~~L~L~~N~l~~~ip~~l~~~l~~L~~L~L~~N~l~~~~p~-~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~~~~~  795 (1009)
                      +++++++|.++ .+|..+   ..+++.|++++|++++..+. .+..+++|++|++++|++++..|..|..++.|      
T Consensus        11 ~~l~~s~~~l~-~ip~~~---~~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L------   80 (192)
T 1w8a_A           11 TTVDCTGRGLK-EIPRDI---PLHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHI------   80 (192)
T ss_dssp             TEEECTTSCCS-SCCSCC---CTTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTC------
T ss_pred             CEEEcCCCCcC-cCccCC---CCCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccC------
Confidence            56777777775 677654   34777888888887765554 37788888888888888888888888877776      


Q ss_pred             hhhhhccccccceeeceEEEeecCCCCCCCCceeEEEccCCccCCCCCccccCcCCCCeEEccCCcccccCCCCccCCCC
Q 036375          796 VKYLLFGRYRGIYYEENLVINTKGSSKDTPRLFHFIDLSGNNLHGDFPTQLTKLVGLVVLNLSRNHIGGQIPENISGLHQ  875 (1009)
Q Consensus       796 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~  875 (1009)
                                                       +.|+|++|+|++..|..|.++++|++|+|++|++++.+|..|..+++
T Consensus        81 ---------------------------------~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~  127 (192)
T 1w8a_A           81 ---------------------------------QELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNS  127 (192)
T ss_dssp             ---------------------------------CEEECCSCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTT
T ss_pred             ---------------------------------CEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCC
Confidence                                             78889999999888888999999999999999999999999999999


Q ss_pred             CCEEeCCCCcCCCCCc
Q 036375          876 LASLDLSSNNLSGGIP  891 (1009)
Q Consensus       876 L~~L~Ls~N~l~~~ip  891 (1009)
                      |++|+|++|.+++..+
T Consensus       128 L~~L~L~~N~l~c~c~  143 (192)
T 1w8a_A          128 LTSLNLASNPFNCNCH  143 (192)
T ss_dssp             CCEEECTTCCBCCSGG
T ss_pred             CCEEEeCCCCccCcCc
Confidence            9999999999998765

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=99.67  E-value=2.5e-16  Score=159.20  Aligned_cols=154  Identities=15%  Similarity=0.233  Sum_probs=115.1

Q ss_pred             CCCCccEEEccCCcccccCCcccccCCCCCeEEccCCcCCccCcCcccCCCCCCEEECCCCcCcccCCccccCCCCCCEE
Q 036375          616 SMPNLIFLSVSGNRLTGKIPGSIGEMQLLQVIDLSRNSISGSISSSIGNCTFLKVLDLSYSSLSGVIPASLGQLTRLQSL  695 (1009)
Q Consensus       616 ~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L  695 (1009)
                      .+++|++|++++|.++. +| .+..+++|++|++++|.++.  +..+..+++|++|++++|++++..|..++.+++|++|
T Consensus        42 ~l~~L~~L~l~~n~i~~-l~-~l~~l~~L~~L~l~~n~~~~--~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L  117 (197)
T 4ezg_A           42 QMNSLTYITLANINVTD-LT-GIEYAHNIKDLTINNIHATN--YNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLL  117 (197)
T ss_dssp             HHHTCCEEEEESSCCSC-CT-TGGGCTTCSEEEEESCCCSC--CGGGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEE
T ss_pred             hcCCccEEeccCCCccC-hH-HHhcCCCCCEEEccCCCCCc--chhhhcCCCCCEEEeECCccCcccChhhcCCCCCCEE
Confidence            45667777777777773 33 57777888888888886653  3467788888888888888887777788888888888


Q ss_pred             EccCccccCCCchhhcCCCCCCEEECcCCcccccCchhhhhcCcCCcEEEccCCcccccCCcccCCCCCCCEEEccCCcC
Q 036375          696 HLNNNKLTGNLPSSFQNLTSLETLDLGNNRFSGNIPSLLGNGFVGLRILSLRSNAFSGEIPSKLSNLSSLQVLDLAENNL  775 (1009)
Q Consensus       696 ~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~ip~~l~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l  775 (1009)
                      ++++|++++..|..+..+++|++|++++|++.+.+| .+. .+++|+.|++++|++++ ++ .+..+++|++|++++|++
T Consensus       118 ~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~-~l~-~l~~L~~L~l~~n~i~~-~~-~l~~l~~L~~L~l~~N~i  193 (197)
T 4ezg_A          118 DISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIM-PLK-TLPELKSLNIQFDGVHD-YR-GIEDFPKLNQLYAFSQTI  193 (197)
T ss_dssp             ECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCCCCG-GGG-GCSSCCEEECTTBCCCC-CT-TGGGCSSCCEEEECBC--
T ss_pred             EecCCccCcHhHHHHhhCCCCCEEEccCCCCccccH-hhc-CCCCCCEEECCCCCCcC-hH-HhccCCCCCEEEeeCccc
Confidence            888888887777888888888888888887334666 344 48888888888888875 33 677888888888888887


Q ss_pred             CC
Q 036375          776 TG  777 (1009)
Q Consensus       776 ~~  777 (1009)
                      .+
T Consensus       194 ~~  195 (197)
T 4ezg_A          194 GG  195 (197)
T ss_dssp             --
T ss_pred             CC
Confidence            54

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=99.63  E-value=4.8e-16  Score=171.07  Aligned_cols=261  Identities=16%  Similarity=0.152  Sum_probs=173.3

Q ss_pred             CCCccEEEccCCcCC--CcCCchhhcCCCCccEEEccCCcccccCCccccc--------CCCCCeEEccCCcCCccCcCc
Q 036375          592 IVEIELLDLSNNHFS--GPIPQNISGSMPNLIFLSVSGNRLTGKIPGSIGE--------MQLLQVIDLSRNSISGSISSS  661 (1009)
Q Consensus       592 ~~~L~~L~Ls~n~l~--~~ip~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~--------l~~L~~L~Ls~N~l~~~~p~~  661 (1009)
                      +++|+.|||++|++.  ...+    +.++.+..+.+..|.   +.+.+|.+        |++|+.+++.+ .++.+.+.+
T Consensus        48 l~~L~~LdLs~n~i~~~~~~~----~~~~~~~~~~~~~~~---I~~~aF~~~~~~~~~g~~~L~~l~L~~-~i~~I~~~a  119 (329)
T 3sb4_A           48 FPSLKVLDISNAEIKMYSGKA----GTYPNGKFYIYMANF---VPAYAFSNVVNGVTKGKQTLEKVILSE-KIKNIEDAA  119 (329)
T ss_dssp             CTTCCEEEEEEEEECCEEESS----SSSGGGCCEEECTTE---ECTTTTEEEETTEEEECTTCCC-CBCT-TCCEECTTT
T ss_pred             hccCeEEecCcceeEEecCcc----ccccccccccccccc---cCHHHhcccccccccccCCCcEEECCc-cccchhHHH
Confidence            467888888888876  1111    122224445555553   23455666        88888888888 777777778


Q ss_pred             ccCCCCCCEEECCCCcCcccCCccccCCCCCCEEEccCcc----ccCCCchhhcCCCCCC-EEECcCCcccccCchhhhh
Q 036375          662 IGNCTFLKVLDLSYSSLSGVIPASLGQLTRLQSLHLNNNK----LTGNLPSSFQNLTSLE-TLDLGNNRFSGNIPSLLGN  736 (1009)
Q Consensus       662 l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~----l~~~~p~~~~~l~~L~-~L~L~~N~l~~~ip~~l~~  736 (1009)
                      |.+|++|+.+++++|.+..+.+.+|..+.++..+.+..+.    .......+|.++..|+ .+.+...   +.++..++.
T Consensus       120 F~~~~~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~~~~L~~~i~~~~~---~~l~~~~~~  196 (329)
T 3sb4_A          120 FKGCDNLKICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFIEGEPLETTIQVGAM---GKLEDEIMK  196 (329)
T ss_dssp             TTTCTTCCEEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEEESCCCEEEEEECTT---CCHHHHHHH
T ss_pred             hhcCcccceEEcCCCCccccchhhhcCCCceEEecCcchhhhhccccccccccccccccceeEEecCC---CcHHHHHhh
Confidence            8888888888888888887777888887777777766532    2223345566777777 5555443   244444432


Q ss_pred             c---CcCCcEEEccCCcccccCCcccCCCCCCCEEEccCCcCCCCCChhhhhhhhhhhccchhhhhhccccccceeeceE
Q 036375          737 G---FVGLRILSLRSNAFSGEIPSKLSNLSSLQVLDLAENNLTGSIPGSVGDLKAMAHVQNIVKYLLFGRYRGIYYEENL  813 (1009)
Q Consensus       737 ~---l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~  813 (1009)
                      .   ..+++.+.+.++-.......-...+++|+.+++++|+++...+..|.++++|                        
T Consensus       197 ~~~~~~~~~~l~~~~~l~~~~~~~l~~~~~~L~~l~L~~n~i~~I~~~aF~~~~~L------------------------  252 (329)
T 3sb4_A          197 AGLQPRDINFLTIEGKLDNADFKLIRDYMPNLVSLDISKTNATTIPDFTFAQKKYL------------------------  252 (329)
T ss_dssp             TTCCGGGCSEEEEEECCCHHHHHHHHHHCTTCCEEECTTBCCCEECTTTTTTCTTC------------------------
T ss_pred             cccCccccceEEEeeeecHHHHHHHHHhcCCCeEEECCCCCcceecHhhhhCCCCC------------------------
Confidence            2   4455666655442211111111236778888888887776555667777766                        


Q ss_pred             EEeecCCCCCCCCceeEEEccCCccCCCCCccccCcCCCC-eEEccCCcccccCCCCccCCCCCCEEeCCCCcCCCCCcc
Q 036375          814 VINTKGSSKDTPRLFHFIDLSGNNLHGDFPTQLTKLVGLV-VLNLSRNHIGGQIPENISGLHQLASLDLSSNNLSGGIPS  892 (1009)
Q Consensus       814 ~~~~~~~~~~~~~~l~~L~Ls~N~l~~~~p~~l~~l~~L~-~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~  892 (1009)
                                     +.|+|++| ++..-+.+|.++++|+ .+++++ +++.+.+.+|.++++|+.+++++|+++...+.
T Consensus       253 ---------------~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l~l~~n~i~~I~~~  315 (329)
T 3sb4_A          253 ---------------LKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRYVLATGDKITTLGDE  315 (329)
T ss_dssp             ---------------CEEECCTT-CCEECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEEEEECSSCCCEECTT
T ss_pred             ---------------CEEECCcc-cceehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCCEEEeCCCccCccchh
Confidence                           67777777 6666667788888888 888887 77767778888888888888888888877777


Q ss_pred             cccCCCCCCeEe
Q 036375          893 SLSSLSFLGYIN  904 (1009)
Q Consensus       893 ~l~~l~~L~~L~  904 (1009)
                      .|.++++|++++
T Consensus       316 aF~~~~~L~~ly  327 (329)
T 3sb4_A          316 LFGNGVPSKLIY  327 (329)
T ss_dssp             TTCTTCCCCEEE
T ss_pred             hhcCCcchhhhc
Confidence            888888888775

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=99.62  E-value=5.7e-16  Score=170.48  Aligned_cols=285  Identities=9%  Similarity=0.040  Sum_probs=196.7

Q ss_pred             CCCccEEEccCCcccCCCCchhhhccCcccEEEecccccc--ccCCCCCCCCCcCeEeccCCCCCCCCCCCCCCccEEEc
Q 036375          523 QQGVSFLDFSNASISGPIPNWFWDISSKLSLLNVSLNQLQ--GQLPNPLNIAPFADVDFRSNLLEGPIPLPIVEIELLDL  600 (1009)
Q Consensus       523 ~~~L~~L~ls~n~i~~~~p~~~~~~~~~L~~L~ls~n~l~--~~~~~~~~~~~l~~l~l~~n~l~~~~~~~~~~L~~L~L  600 (1009)
                      +++++.|+++++ +....-..+...+++|+.|+|++|++.  ...+..                       ++.+..+.+
T Consensus        24 ~~~l~~L~l~g~-i~~~~~~~l~~~l~~L~~LdLs~n~i~~~~~~~~~-----------------------~~~~~~~~~   79 (329)
T 3sb4_A           24 ANSITHLTLTGK-LNAEDFRHLRDEFPSLKVLDISNAEIKMYSGKAGT-----------------------YPNGKFYIY   79 (329)
T ss_dssp             HHHCSEEEEEEE-ECHHHHHHHHHSCTTCCEEEEEEEEECCEEESSSS-----------------------SGGGCCEEE
T ss_pred             hCceeEEEEecc-ccHHHHHHHHHhhccCeEEecCcceeEEecCcccc-----------------------ccccccccc
Confidence            445667776653 111111223333567888888888876  111111                       111233334


Q ss_pred             cCCcCCCcCCchhhcC--------CCCccEEEccCCcccccCCcccccCCCCCeEEccCCcCCccCcCcccCCCCCCEEE
Q 036375          601 SNNHFSGPIPQNISGS--------MPNLIFLSVSGNRLTGKIPGSIGEMQLLQVIDLSRNSISGSISSSIGNCTFLKVLD  672 (1009)
Q Consensus       601 s~n~l~~~ip~~~~~~--------l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~  672 (1009)
                      ..|    .+|+..|..        +++|+.+++.+ .++.+.+.+|.+|++|+.+++++|.+..+.+.+|.++.++..+.
T Consensus        80 ~~~----~I~~~aF~~~~~~~~~g~~~L~~l~L~~-~i~~I~~~aF~~~~~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~  154 (329)
T 3sb4_A           80 MAN----FVPAYAFSNVVNGVTKGKQTLEKVILSE-KIKNIEDAAFKGCDNLKICQIRKKTAPNLLPEALADSVTAIFIP  154 (329)
T ss_dssp             CTT----EECTTTTEEEETTEEEECTTCCC-CBCT-TCCEECTTTTTTCTTCCEEEBCCSSCCEECTTSSCTTTCEEEEC
T ss_pred             ccc----ccCHHHhcccccccccccCCCcEEECCc-cccchhHHHhhcCcccceEEcCCCCccccchhhhcCCCceEEec
Confidence            443    566677777        99999999999 88888888999999999999999999888888999988888887


Q ss_pred             CCCCc----CcccCCccccCCCCCC-EEEccCccccCCCchhhc----CCCCCCEEECcCCcccccCchhhhhcCcCCcE
Q 036375          673 LSYSS----LSGVIPASLGQLTRLQ-SLHLNNNKLTGNLPSSFQ----NLTSLETLDLGNNRFSGNIPSLLGNGFVGLRI  743 (1009)
Q Consensus       673 Ls~N~----l~~~~p~~~~~l~~L~-~L~L~~N~l~~~~p~~~~----~l~~L~~L~L~~N~l~~~ip~~l~~~l~~L~~  743 (1009)
                      ...+.    .....+.+|.++..|+ .+.+....   .++..+.    ...+++.+.+.++-.. .-...+...+++|+.
T Consensus       155 ~~~~~~~~~~~~i~~~~f~~~~~L~~~i~~~~~~---~l~~~~~~~~~~~~~~~~l~~~~~l~~-~~~~~l~~~~~~L~~  230 (329)
T 3sb4_A          155 LGSSDAYRFKNRWEHFAFIEGEPLETTIQVGAMG---KLEDEIMKAGLQPRDINFLTIEGKLDN-ADFKLIRDYMPNLVS  230 (329)
T ss_dssp             TTCTHHHHTSTTTTTSCEEESCCCEEEEEECTTC---CHHHHHHHTTCCGGGCSEEEEEECCCH-HHHHHHHHHCTTCCE
T ss_pred             CcchhhhhccccccccccccccccceeEEecCCC---cHHHHHhhcccCccccceEEEeeeecH-HHHHHHHHhcCCCeE
Confidence            76632    2333445677777777 55554422   2232221    2455666766655322 222233334788888


Q ss_pred             EEccCCcccccCCcccCCCCCCCEEEccCCcCCCCCChhhhhhhhhhhccchhhhhhccccccceeeceEEEeecCCCCC
Q 036375          744 LSLRSNAFSGEIPSKLSNLSSLQVLDLAENNLTGSIPGSVGDLKAMAHVQNIVKYLLFGRYRGIYYEENLVINTKGSSKD  823 (1009)
Q Consensus       744 L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  823 (1009)
                      +++++|+++...+..|.++++|+.|++.+| ++..-+..|.++++|                                  
T Consensus       231 l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L----------------------------------  275 (329)
T 3sb4_A          231 LDISKTNATTIPDFTFAQKKYLLKIKLPHN-LKTIGQRVFSNCGRL----------------------------------  275 (329)
T ss_dssp             EECTTBCCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTC----------------------------------
T ss_pred             EECCCCCcceecHhhhhCCCCCCEEECCcc-cceehHHHhhCChhc----------------------------------
Confidence            888888888666667888888999999887 666656677777776                                  


Q ss_pred             CCCcee-EEEccCCccCCCCCccccCcCCCCeEEccCCcccccCCCCccCCCCCCEEeC
Q 036375          824 TPRLFH-FIDLSGNNLHGDFPTQLTKLVGLVVLNLSRNHIGGQIPENISGLHQLASLDL  881 (1009)
Q Consensus       824 ~~~~l~-~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L  881 (1009)
                           + .+++++ +++..-+.+|.++++|+.+++++|+++.+.+.+|.++++|+.++.
T Consensus       276 -----~~~l~l~~-~l~~I~~~aF~~c~~L~~l~l~~n~i~~I~~~aF~~~~~L~~ly~  328 (329)
T 3sb4_A          276 -----AGTLELPA-SVTAIEFGAFMGCDNLRYVLATGDKITTLGDELFGNGVPSKLIYK  328 (329)
T ss_dssp             -----CEEEEECT-TCCEECTTTTTTCTTEEEEEECSSCCCEECTTTTCTTCCCCEEEC
T ss_pred             -----cEEEEEcc-cceEEchhhhhCCccCCEEEeCCCccCccchhhhcCCcchhhhcc
Confidence                 6 778877 777677789999999999999999999888889999999998864

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=99.61  E-value=4.1e-15  Score=149.26  Aligned_cols=131  Identities=23%  Similarity=0.336  Sum_probs=106.9

Q ss_pred             cEEEccCCcccccCCcccCCCCCCCEEEccCCcCCCCCChhhhhhhhhhhccchhhhhhccccccceeeceEEEeecCCC
Q 036375          742 RILSLRSNAFSGEIPSKLSNLSSLQVLDLAENNLTGSIPGSVGDLKAMAHVQNIVKYLLFGRYRGIYYEENLVINTKGSS  821 (1009)
Q Consensus       742 ~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  821 (1009)
                      +.+++++|.++ .+|..+.  ++|++|++++|+++ .+|..+.+++.|                                
T Consensus        13 ~~l~~~~~~l~-~ip~~~~--~~l~~L~L~~n~i~-~ip~~~~~l~~L--------------------------------   56 (193)
T 2wfh_A           13 TVVRCSNKGLK-VLPKGIP--RDVTELYLDGNQFT-LVPKELSNYKHL--------------------------------   56 (193)
T ss_dssp             TEEECTTSCCS-SCCSCCC--TTCCEEECCSSCCC-SCCGGGGGCTTC--------------------------------
T ss_pred             CEEEcCCCCCC-cCCCCCC--CCCCEEECCCCcCc-hhHHHhhcccCC--------------------------------
Confidence            45666666665 4554432  46778888888877 566777666666                                


Q ss_pred             CCCCCceeEEEccCCccCCCCCccccCcCCCCeEEccCCcccccCCCCccCCCCCCEEeCCCCcCCCCCcccccCCCCCC
Q 036375          822 KDTPRLFHFIDLSGNNLHGDFPTQLTKLVGLVVLNLSRNHIGGQIPENISGLHQLASLDLSSNNLSGGIPSSLSSLSFLG  901 (1009)
Q Consensus       822 ~~~~~~l~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~  901 (1009)
                             +.|+|++|+|++..|..|.++++|++|+|++|+|++..|..|.++++|++|+|++|++++..+..|..+++|+
T Consensus        57 -------~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~  129 (193)
T 2wfh_A           57 -------TLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALS  129 (193)
T ss_dssp             -------CEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCC
T ss_pred             -------CEEECCCCcCCEeCHhHccCCCCCCEEECCCCccCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCcccc
Confidence                   7888888888888888899999999999999999999999999999999999999999987777899999999


Q ss_pred             eEeCCCCcceecCC
Q 036375          902 YINLSRNQLSGKIP  915 (1009)
Q Consensus       902 ~L~ls~N~l~g~ip  915 (1009)
                      +|++++|++.+..+
T Consensus       130 ~L~L~~N~~~C~c~  143 (193)
T 2wfh_A          130 HLAIGANPLYCDCN  143 (193)
T ss_dssp             EEECCSSCEECSGG
T ss_pred             EEEeCCCCeecCCc
Confidence            99999999986543

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=99.59  E-value=5.1e-15  Score=146.75  Aligned_cols=132  Identities=24%  Similarity=0.274  Sum_probs=95.3

Q ss_pred             cEEEccCCcccccCCcccCCCCCCCEEEccCCcCCCCCChhhhhhhhhhhccchhhhhhccccccceeeceEEEeecCCC
Q 036375          742 RILSLRSNAFSGEIPSKLSNLSSLQVLDLAENNLTGSIPGSVGDLKAMAHVQNIVKYLLFGRYRGIYYEENLVINTKGSS  821 (1009)
Q Consensus       742 ~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  821 (1009)
                      +.+++++|+++ .+|..+  .++|+.|++++|++++..+..+..+++|                                
T Consensus        10 ~~l~~~~~~l~-~~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L--------------------------------   54 (177)
T 2o6r_A           10 TEIRCNSKGLT-SVPTGI--PSSATRLELESNKLQSLPHGVFDKLTQL--------------------------------   54 (177)
T ss_dssp             TEEECCSSCCS-SCCTTC--CTTCSEEECCSSCCCCCCTTTTTTCTTC--------------------------------
T ss_pred             CEEEecCCCCc-cCCCCC--CCCCcEEEeCCCcccEeCHHHhcCcccc--------------------------------
Confidence            44555555554 333322  2456666666666665555555555554                                


Q ss_pred             CCCCCceeEEEccCCccCCCCCccccCcCCCCeEEccCCcccccCCCCccCCCCCCEEeCCCCcCCCCCcccccCCCCCC
Q 036375          822 KDTPRLFHFIDLSGNNLHGDFPTQLTKLVGLVVLNLSRNHIGGQIPENISGLHQLASLDLSSNNLSGGIPSSLSSLSFLG  901 (1009)
Q Consensus       822 ~~~~~~l~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~  901 (1009)
                             +.|+|++|++++..+..++.+++|++|++++|++++.++..+..+++|++|++++|++++..+..+..+++|+
T Consensus        55 -------~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~  127 (177)
T 2o6r_A           55 -------TKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQ  127 (177)
T ss_dssp             -------SEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCC
T ss_pred             -------cEEECCCCcceEeChhHccCCCccCEEECCCCCccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccC
Confidence                   6667777777766666678888888888888888888877888888999999999999877777778888999


Q ss_pred             eEeCCCCcceecCC
Q 036375          902 YINLSRNQLSGKIP  915 (1009)
Q Consensus       902 ~L~ls~N~l~g~ip  915 (1009)
                      +|++++|+++|.+|
T Consensus       128 ~L~l~~N~~~~~~~  141 (177)
T 2o6r_A          128 KIWLHTNPWDCSCP  141 (177)
T ss_dssp             EEECCSSCBCCCHH
T ss_pred             EEEecCCCeeccCc
Confidence            99999998888766

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=99.59  E-value=3.9e-14  Score=158.93  Aligned_cols=263  Identities=11%  Similarity=0.088  Sum_probs=190.1

Q ss_pred             CccEEEccCCcCCCcCCchhhcCCCCccEEEccCCcccccCCcccccCCCCCeEEccCCcCCccCcCcccCCCCCCEEEC
Q 036375          594 EIELLDLSNNHFSGPIPQNISGSMPNLIFLSVSGNRLTGKIPGSIGEMQLLQVIDLSRNSISGSISSSIGNCTFLKVLDL  673 (1009)
Q Consensus       594 ~L~~L~Ls~n~l~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L  673 (1009)
                      .++.+.+.++ ++ .|+...|.++ +|+.+.+..+ ++.+...+|.++ +|+.+.+.+ .+..+.+.+|.+|++|+.+++
T Consensus       114 ~l~~i~ip~~-i~-~I~~~aF~~~-~L~~i~l~~~-i~~I~~~aF~~~-~L~~i~lp~-~l~~I~~~aF~~c~~L~~l~l  187 (401)
T 4fdw_A          114 GYNEIILPNS-VK-SIPKDAFRNS-QIAKVVLNEG-LKSIGDMAFFNS-TVQEIVFPS-TLEQLKEDIFYYCYNLKKADL  187 (401)
T ss_dssp             SCSEEECCTT-CC-EECTTTTTTC-CCSEEECCTT-CCEECTTTTTTC-CCCEEECCT-TCCEECSSTTTTCTTCCEEEC
T ss_pred             CccEEEECCc-cC-EehHhhcccC-CccEEEeCCC-ccEECHHhcCCC-CceEEEeCC-CccEehHHHhhCcccCCeeec
Confidence            3444444432 33 5666667665 7899998776 777777888885 699999985 677677788999999999999


Q ss_pred             CCCcCcccCCccccCCCCCCEEEccCccccCCCchhhcCCCCCCEEECcCCcccccCchhhhhcCcCCcEEEccCCcccc
Q 036375          674 SYSSLSGVIPASLGQLTRLQSLHLNNNKLTGNLPSSFQNLTSLETLDLGNNRFSGNIPSLLGNGFVGLRILSLRSNAFSG  753 (1009)
Q Consensus       674 s~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~ip~~l~~~l~~L~~L~L~~N~l~~  753 (1009)
                      ++|+++.+...+|. +.+|+.+.+.++ ++..-..+|.+|++|+.+++.+| ++ .|+...+.+ .+|+.+.+. +.++.
T Consensus       188 ~~n~l~~I~~~aF~-~~~L~~l~lp~~-l~~I~~~aF~~~~~L~~l~l~~~-l~-~I~~~aF~~-~~L~~i~lp-~~i~~  261 (401)
T 4fdw_A          188 SKTKITKLPASTFV-YAGIEEVLLPVT-LKEIGSQAFLKTSQLKTIEIPEN-VS-TIGQEAFRE-SGITTVKLP-NGVTN  261 (401)
T ss_dssp             TTSCCSEECTTTTT-TCCCSEEECCTT-CCEECTTTTTTCTTCCCEECCTT-CC-EECTTTTTT-CCCSEEEEE-TTCCE
T ss_pred             CCCcceEechhhEe-ecccCEEEeCCc-hheehhhHhhCCCCCCEEecCCC-cc-Ccccccccc-CCccEEEeC-CCccE
Confidence            99999877677776 589999999854 77667788999999999999876 44 677776654 789999994 45665


Q ss_pred             cCCcccCCCCCCCEEEccCCcCC-----CCCChhhhhhhhhhhccchhhhhhccccccceeeceEEEeecCCCCCCCCce
Q 036375          754 EIPSKLSNLSSLQVLDLAENNLT-----GSIPGSVGDLKAMAHVQNIVKYLLFGRYRGIYYEENLVINTKGSSKDTPRLF  828 (1009)
Q Consensus       754 ~~p~~l~~l~~L~~L~Ls~N~l~-----~~~p~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  828 (1009)
                      .-+..|.+|++|+.+++.+|.+.     ...+..|.++++|                                       
T Consensus       262 I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L---------------------------------------  302 (401)
T 4fdw_A          262 IASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKL---------------------------------------  302 (401)
T ss_dssp             ECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTC---------------------------------------
T ss_pred             EChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccC---------------------------------------
Confidence            55678889999999999888765     2333455555555                                       


Q ss_pred             eEEEccCCccCCCCCccccCcCCCCeEEccCCcccccCCCCccCCCCCCEEeCCCCcCCCCCcccccCCC-CCCeEeCCC
Q 036375          829 HFIDLSGNNLHGDFPTQLTKLVGLVVLNLSRNHIGGQIPENISGLHQLASLDLSSNNLSGGIPSSLSSLS-FLGYINLSR  907 (1009)
Q Consensus       829 ~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~-~L~~L~ls~  907 (1009)
                      +.++|. +.++..-...|.++++|+.++|..| ++.+.+.+|.++ +|+.+++++|.+....+..|.+++ .++.+++..
T Consensus       303 ~~l~l~-~~i~~I~~~aF~~c~~L~~l~lp~~-l~~I~~~aF~~~-~L~~l~l~~n~~~~l~~~~F~~~~~~l~~l~vp~  379 (401)
T 4fdw_A          303 ARFEIP-ESIRILGQGLLGGNRKVTQLTIPAN-VTQINFSAFNNT-GIKEVKVEGTTPPQVFEKVWYGFPDDITVIRVPA  379 (401)
T ss_dssp             CEECCC-TTCCEECTTTTTTCCSCCEEEECTT-CCEECTTSSSSS-CCCEEEECCSSCCBCCCSSCCCSCTTCCEEEECG
T ss_pred             CeEEeC-CceEEEhhhhhcCCCCccEEEECcc-ccEEcHHhCCCC-CCCEEEEcCCCCcccccccccCCCCCccEEEeCH
Confidence            566666 3466555667777777777777544 665666777777 777777777777766666666663 566676666


Q ss_pred             Ccc
Q 036375          908 NQL  910 (1009)
Q Consensus       908 N~l  910 (1009)
                      |.+
T Consensus       380 ~~~  382 (401)
T 4fdw_A          380 ESV  382 (401)
T ss_dssp             GGH
T ss_pred             HHH
Confidence            543

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=99.58  E-value=1.5e-15  Score=145.93  Aligned_cols=129  Identities=23%  Similarity=0.274  Sum_probs=86.1

Q ss_pred             CcCCcEEEccCCccc-ccCCcccCCCCCCCEEEccCCcCCCCCChhhhhhhhhhhccchhhhhhccccccceeeceEEEe
Q 036375          738 FVGLRILSLRSNAFS-GEIPSKLSNLSSLQVLDLAENNLTGSIPGSVGDLKAMAHVQNIVKYLLFGRYRGIYYEENLVIN  816 (1009)
Q Consensus       738 l~~L~~L~L~~N~l~-~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~  816 (1009)
                      .++|+.|++++|.++ +.+|..+..+++|++|++++|++++.  ..++.++.|                           
T Consensus        16 ~~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L---------------------------   66 (149)
T 2je0_A           16 PSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKL---------------------------   66 (149)
T ss_dssp             GGGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTCCCCTTC---------------------------
T ss_pred             CccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--hhhhcCCCC---------------------------
Confidence            345666666666665 55666666666666666666666654  334444443                           


Q ss_pred             ecCCCCCCCCceeEEEccCCccCCCCCccccCcCCCCeEEccCCccccc-CCCCccCCCCCCEEeCCCCcCCCCCc---c
Q 036375          817 TKGSSKDTPRLFHFIDLSGNNLHGDFPTQLTKLVGLVVLNLSRNHIGGQ-IPENISGLHQLASLDLSSNNLSGGIP---S  892 (1009)
Q Consensus       817 ~~~~~~~~~~~l~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~-~p~~l~~l~~L~~L~Ls~N~l~~~ip---~  892 (1009)
                                  +.|+|++|.+++.+|..++.+++|++|++++|++++. .|..++.+++|++|++++|.+++..+   .
T Consensus        67 ------------~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~  134 (149)
T 2je0_A           67 ------------KKLELSDNRVSGGLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYREN  134 (149)
T ss_dssp             ------------CEEECCSSCCCSCTHHHHHHCTTCCEEECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHH
T ss_pred             ------------CEEECCCCcccchHHHHhhhCCCCCEEECCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHH
Confidence                        6667777777766666666677777777777777764 34667777777777777777776655   4


Q ss_pred             cccCCCCCCeEeCCC
Q 036375          893 SLSSLSFLGYINLSR  907 (1009)
Q Consensus       893 ~l~~l~~L~~L~ls~  907 (1009)
                      .+..+++|++||+++
T Consensus       135 ~~~~l~~L~~L~l~d  149 (149)
T 2je0_A          135 VFKLLPQLTYLDGYD  149 (149)
T ss_dssp             HHHHCTTCCEETTBC
T ss_pred             HHHHCCCcccccCCC
Confidence            677777777777753

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=99.58  E-value=2e-15  Score=148.25  Aligned_cols=73  Identities=30%  Similarity=0.427  Sum_probs=39.5

Q ss_pred             CCCCEEECcCCccc-ccCchhhhhcCcCCcEEEccCCcccccCCcccCCCCCCCEEEccCCcCCCCCChhhhhhhhh
Q 036375          714 TSLETLDLGNNRFS-GNIPSLLGNGFVGLRILSLRSNAFSGEIPSKLSNLSSLQVLDLAENNLTGSIPGSVGDLKAM  789 (1009)
Q Consensus       714 ~~L~~L~L~~N~l~-~~ip~~l~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L  789 (1009)
                      ++|++|++++|.++ +.+|..+. .+++|+.|++++|.+++.  ..+..+++|++|++++|++++.+|..+.++++|
T Consensus        24 ~~L~~L~l~~n~l~~~~i~~~~~-~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L   97 (168)
T 2ell_A           24 AAVRELVLDNCKSNDGKIEGLTA-EFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNL   97 (168)
T ss_dssp             TSCSEEECCSCBCBTTBCSSCCG-GGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTC
T ss_pred             ccCCEEECCCCCCChhhHHHHHH-hCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHhhCCCC
Confidence            55666666666665 45555433 355666666666665543  445555555555555555555444444444433

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=99.58  E-value=5.5e-15  Score=145.14  Aligned_cols=134  Identities=25%  Similarity=0.269  Sum_probs=109.9

Q ss_pred             CcCCcEEEccCCccc-ccCCcccCCCCCCCEEEccCCcCCCCCChhhhhhhhhhhccchhhhhhccccccceeeceEEEe
Q 036375          738 FVGLRILSLRSNAFS-GEIPSKLSNLSSLQVLDLAENNLTGSIPGSVGDLKAMAHVQNIVKYLLFGRYRGIYYEENLVIN  816 (1009)
Q Consensus       738 l~~L~~L~L~~N~l~-~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~  816 (1009)
                      .++|+.|++++|.++ +.+|..+..+++|++|++++|.+++.  ..+..++.|                           
T Consensus        23 ~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L---------------------------   73 (168)
T 2ell_A           23 PAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--SNLPKLPKL---------------------------   73 (168)
T ss_dssp             TTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC--SSCCCCSSC---------------------------
T ss_pred             cccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh--hhhccCCCC---------------------------
Confidence            577889999999887 67888888888999999999988865  455555555                           


Q ss_pred             ecCCCCCCCCceeEEEccCCccCCCCCccccCcCCCCeEEccCCcccccC-CCCccCCCCCCEEeCCCCcCCCCCc---c
Q 036375          817 TKGSSKDTPRLFHFIDLSGNNLHGDFPTQLTKLVGLVVLNLSRNHIGGQI-PENISGLHQLASLDLSSNNLSGGIP---S  892 (1009)
Q Consensus       817 ~~~~~~~~~~~l~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~-p~~l~~l~~L~~L~Ls~N~l~~~ip---~  892 (1009)
                                  +.|+|++|++++.+|..+.++++|++|+|++|++++.. +..+..+++|+.|++++|.+++..+   .
T Consensus        74 ------------~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~  141 (168)
T 2ell_A           74 ------------KKLELSENRIFGGLDMLAEKLPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRES  141 (168)
T ss_dssp             ------------CEEEEESCCCCSCCCHHHHHCTTCCEEECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHH
T ss_pred             ------------CEEECcCCcCchHHHHHHhhCCCCCEEeccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHH
Confidence                        78899999998888888888889999999999988753 3778888999999999999987665   5


Q ss_pred             cccCCCCCCeEeCCCCccee
Q 036375          893 SLSSLSFLGYINLSRNQLSG  912 (1009)
Q Consensus       893 ~l~~l~~L~~L~ls~N~l~g  912 (1009)
                      .+..+++|++||+++|.+..
T Consensus       142 ~~~~l~~L~~L~l~~n~~~~  161 (168)
T 2ell_A          142 VFKLLPQLTYLDGYDREDQE  161 (168)
T ss_dssp             HHTTCSSCCEETTEETTSCB
T ss_pred             HHHhCccCcEecCCCCChhh
Confidence            78888999999999987753

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=99.55  E-value=1.6e-14  Score=144.82  Aligned_cols=129  Identities=24%  Similarity=0.297  Sum_probs=104.0

Q ss_pred             CEEECcCCcccccCchhhhhcCcCCcEEEccCCcccccCCcccCCCCCCCEEEccCCcCCCCCChhhhhhhhhhhccchh
Q 036375          717 ETLDLGNNRFSGNIPSLLGNGFVGLRILSLRSNAFSGEIPSKLSNLSSLQVLDLAENNLTGSIPGSVGDLKAMAHVQNIV  796 (1009)
Q Consensus       717 ~~L~L~~N~l~~~ip~~l~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~~~~~~  796 (1009)
                      +.+++++|.++ .+|..+   .++|+.|++++|.++ .+|..+..+++|+.|++++|++++..|..|..++.|       
T Consensus        13 ~~l~~~~~~l~-~ip~~~---~~~l~~L~L~~n~i~-~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L-------   80 (193)
T 2wfh_A           13 TVVRCSNKGLK-VLPKGI---PRDVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQL-------   80 (193)
T ss_dssp             TEEECTTSCCS-SCCSCC---CTTCCEEECCSSCCC-SCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTC-------
T ss_pred             CEEEcCCCCCC-cCCCCC---CCCCCEEECCCCcCc-hhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCC-------
Confidence            45666666665 666543   356777777777776 566777788888888888888887777777777766       


Q ss_pred             hhhhccccccceeeceEEEeecCCCCCCCCceeEEEccCCccCCCCCccccCcCCCCeEEccCCcccccCCCCccCCCCC
Q 036375          797 KYLLFGRYRGIYYEENLVINTKGSSKDTPRLFHFIDLSGNNLHGDFPTQLTKLVGLVVLNLSRNHIGGQIPENISGLHQL  876 (1009)
Q Consensus       797 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L  876 (1009)
                                                      +.|+|++|+|++..|..|.++++|+.|+|++|+|++..+..|..+++|
T Consensus        81 --------------------------------~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L  128 (193)
T 2wfh_A           81 --------------------------------LTLILSYNRLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSAL  128 (193)
T ss_dssp             --------------------------------CEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTC
T ss_pred             --------------------------------CEEECCCCccCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccc
Confidence                                            778888888888888889999999999999999998888889999999


Q ss_pred             CEEeCCCCcCCCC
Q 036375          877 ASLDLSSNNLSGG  889 (1009)
Q Consensus       877 ~~L~Ls~N~l~~~  889 (1009)
                      +.|+|++|.+...
T Consensus       129 ~~L~L~~N~~~C~  141 (193)
T 2wfh_A          129 SHLAIGANPLYCD  141 (193)
T ss_dssp             CEEECCSSCEECS
T ss_pred             cEEEeCCCCeecC
Confidence            9999999999753

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=99.55  E-value=2.4e-14  Score=141.84  Aligned_cols=133  Identities=20%  Similarity=0.222  Sum_probs=108.2

Q ss_pred             CCEEECcCCcccccCchhhhhcCcCCcEEEccCCcccccCCcccCCCCCCCEEEccCCcCCCCCChhhhhhhhhhhccch
Q 036375          716 LETLDLGNNRFSGNIPSLLGNGFVGLRILSLRSNAFSGEIPSKLSNLSSLQVLDLAENNLTGSIPGSVGDLKAMAHVQNI  795 (1009)
Q Consensus       716 L~~L~L~~N~l~~~ip~~l~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~~~~~  795 (1009)
                      .+.+++++|.++ .+|..+   .++|+.|++++|++++..+..+..+++|++|++++|++++..+..+..++.|      
T Consensus         9 ~~~l~~~~~~l~-~~p~~~---~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L------   78 (177)
T 2o6r_A            9 GTEIRCNSKGLT-SVPTGI---PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKL------   78 (177)
T ss_dssp             TTEEECCSSCCS-SCCTTC---CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTC------
T ss_pred             CCEEEecCCCCc-cCCCCC---CCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCcc------
Confidence            356777777766 566543   4677888888888876666667888888888888888887666667777666      


Q ss_pred             hhhhhccccccceeeceEEEeecCCCCCCCCceeEEEccCCccCCCCCccccCcCCCCeEEccCCcccccCCCCccCCCC
Q 036375          796 VKYLLFGRYRGIYYEENLVINTKGSSKDTPRLFHFIDLSGNNLHGDFPTQLTKLVGLVVLNLSRNHIGGQIPENISGLHQ  875 (1009)
Q Consensus       796 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~  875 (1009)
                                                       +.|+|++|++++..+..+..+++|++|++++|++++.++..+..+++
T Consensus        79 ---------------------------------~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~  125 (177)
T 2o6r_A           79 ---------------------------------TILYLHENKLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTS  125 (177)
T ss_dssp             ---------------------------------CEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTT
T ss_pred             ---------------------------------CEEECCCCCccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcc
Confidence                                             78899999999888888899999999999999999888888899999


Q ss_pred             CCEEeCCCCcCCCCCc
Q 036375          876 LASLDLSSNNLSGGIP  891 (1009)
Q Consensus       876 L~~L~Ls~N~l~~~ip  891 (1009)
                      |++|++++|.+++..|
T Consensus       126 L~~L~l~~N~~~~~~~  141 (177)
T 2o6r_A          126 LQKIWLHTNPWDCSCP  141 (177)
T ss_dssp             CCEEECCSSCBCCCHH
T ss_pred             cCEEEecCCCeeccCc
Confidence            9999999999998765

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=99.54  E-value=1.4e-14  Score=138.99  Aligned_cols=108  Identities=23%  Similarity=0.319  Sum_probs=50.5

Q ss_pred             CCccEEEccCCccc-ccCCcccccCCCCCeEEccCCcCCccCcCcccCCCCCCEEECCCCcCcccCCccccCCCCCCEEE
Q 036375          618 PNLIFLSVSGNRLT-GKIPGSIGEMQLLQVIDLSRNSISGSISSSIGNCTFLKVLDLSYSSLSGVIPASLGQLTRLQSLH  696 (1009)
Q Consensus       618 ~~L~~L~Ls~n~l~-~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~  696 (1009)
                      +++++|++++|.++ +.+|..+..+++|++|++++|.+++.  ..+..+++|++|++++|++++.+|..+..+++|++|+
T Consensus        17 ~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~   94 (149)
T 2je0_A           17 SDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLN   94 (149)
T ss_dssp             GGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEE
T ss_pred             ccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEE
Confidence            44555555555554 44444444455555555555554433  3444444444444444444444444444444444444


Q ss_pred             ccCccccCC-CchhhcCCCCCCEEECcCCccc
Q 036375          697 LNNNKLTGN-LPSSFQNLTSLETLDLGNNRFS  727 (1009)
Q Consensus       697 L~~N~l~~~-~p~~~~~l~~L~~L~L~~N~l~  727 (1009)
                      +++|++++. .+..+..+++|++|++++|+++
T Consensus        95 ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~  126 (149)
T 2je0_A           95 LSGNKIKDLSTIEPLKKLENLKSLDLFNCEVT  126 (149)
T ss_dssp             CTTSCCCSHHHHGGGGGCTTCCEEECTTCGGG
T ss_pred             CCCCcCCChHHHHHHhhCCCCCEEeCcCCccc
Confidence            444444431 1234444444444444444444

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=99.49  E-value=6.4e-16  Score=156.35  Aligned_cols=127  Identities=24%  Similarity=0.307  Sum_probs=73.6

Q ss_pred             CcCCcEEEccCCcccccCCcccCCCCCCCEEEccCCcCCCCCChhhhhhhhhhhccchhhhhhccccccceeeceEEEee
Q 036375          738 FVGLRILSLRSNAFSGEIPSKLSNLSSLQVLDLAENNLTGSIPGSVGDLKAMAHVQNIVKYLLFGRYRGIYYEENLVINT  817 (1009)
Q Consensus       738 l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~  817 (1009)
                      +++|+.|++++|.+++ +| .+..+++|++|++++|+++ .+|..+..+++|                            
T Consensus        47 l~~L~~L~ls~n~l~~-l~-~~~~l~~L~~L~l~~n~l~-~l~~~~~~~~~L----------------------------   95 (198)
T 1ds9_A           47 LKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIK-KIENLDAVADTL----------------------------   95 (198)
T ss_dssp             TTTCSEEECSEEEESC-CC-CHHHHTTCCEEEEEEEEEC-SCSSHHHHHHHC----------------------------
T ss_pred             CCCCCEEECCCCCCcc-cc-ccccCCCCCEEECCCCCcc-cccchhhcCCcC----------------------------
Confidence            5555555555555553 44 4555556666666666655 445555555544                            


Q ss_pred             cCCCCCCCCceeEEEccCCccCCCCCccccCcCCCCeEEccCCcccccCC-CCccCCCCCCEEeCCCCcCCCCCccc---
Q 036375          818 KGSSKDTPRLFHFIDLSGNNLHGDFPTQLTKLVGLVVLNLSRNHIGGQIP-ENISGLHQLASLDLSSNNLSGGIPSS---  893 (1009)
Q Consensus       818 ~~~~~~~~~~l~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p-~~l~~l~~L~~L~Ls~N~l~~~ip~~---  893 (1009)
                                 +.|+|++|++++ +| .+..+++|+.|++++|++++..+ ..+..+++|++|++++|.+++.+|..   
T Consensus        96 -----------~~L~L~~N~l~~-l~-~~~~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~  162 (198)
T 1ds9_A           96 -----------EELWISYNQIAS-LS-GIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNAT  162 (198)
T ss_dssp             -----------SEEEEEEEECCC-HH-HHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTH
T ss_pred             -----------CEEECcCCcCCc-CC-ccccCCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCccccccccccch
Confidence                       556666666664 33 45666666666666666664332 35566666666666666666655542   


Q ss_pred             -------ccCCCCCCeEeCCCCcc
Q 036375          894 -------LSSLSFLGYINLSRNQL  910 (1009)
Q Consensus       894 -------l~~l~~L~~L~ls~N~l  910 (1009)
                             +..+++|++||  +|++
T Consensus       163 ~~~~~~~~~~l~~L~~Ld--~~~i  184 (198)
T 1ds9_A          163 SEYRIEVVKRLPNLKKLD--GMPV  184 (198)
T ss_dssp             HHHHHHHHHHCSSCSEEC--CGGG
T ss_pred             HHHHHHHHHhCCCcEEEC--Cccc
Confidence                   56666666665  4444

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=99.48  E-value=5.6e-13  Score=149.51  Aligned_cols=242  Identities=13%  Similarity=0.121  Sum_probs=189.8

Q ss_pred             CccEEEccCCcCCCcCCchhhcCCCCccEEEccCCcccccCCcccccCCCCCeEEccCCcCCccCcCcccCCCCCCEEEC
Q 036375          594 EIELLDLSNNHFSGPIPQNISGSMPNLIFLSVSGNRLTGKIPGSIGEMQLLQVIDLSRNSISGSISSSIGNCTFLKVLDL  673 (1009)
Q Consensus       594 ~L~~L~Ls~n~l~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L  673 (1009)
                      +|+.+++..+ +. .|+...|.++ +|+.+.+.+ .++.+.+.+|.+|++|+.+++++|+++......|. +.+|+.+.+
T Consensus       136 ~L~~i~l~~~-i~-~I~~~aF~~~-~L~~i~lp~-~l~~I~~~aF~~c~~L~~l~l~~n~l~~I~~~aF~-~~~L~~l~l  210 (401)
T 4fdw_A          136 QIAKVVLNEG-LK-SIGDMAFFNS-TVQEIVFPS-TLEQLKEDIFYYCYNLKKADLSKTKITKLPASTFV-YAGIEEVLL  210 (401)
T ss_dssp             CCSEEECCTT-CC-EECTTTTTTC-CCCEEECCT-TCCEECSSTTTTCTTCCEEECTTSCCSEECTTTTT-TCCCSEEEC
T ss_pred             CccEEEeCCC-cc-EECHHhcCCC-CceEEEeCC-CccEehHHHhhCcccCCeeecCCCcceEechhhEe-ecccCEEEe
Confidence            5777777766 44 6777777764 699999986 67777788899999999999999988877667776 688999999


Q ss_pred             CCCcCcccCCccccCCCCCCEEEccCccccCCCchhhcCCCCCCEEECcCCcccccCchhhhhcCcCCcEEEccCCccc-
Q 036375          674 SYSSLSGVIPASLGQLTRLQSLHLNNNKLTGNLPSSFQNLTSLETLDLGNNRFSGNIPSLLGNGFVGLRILSLRSNAFS-  752 (1009)
Q Consensus       674 s~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~ip~~l~~~l~~L~~L~L~~N~l~-  752 (1009)
                      ..+ ++.+...+|.++++|+.+++..| ++..-..+|.+ .+|+.+++. +.++ .++...+.++++|+.+++.+|.+. 
T Consensus       211 p~~-l~~I~~~aF~~~~~L~~l~l~~~-l~~I~~~aF~~-~~L~~i~lp-~~i~-~I~~~aF~~c~~L~~l~l~~~~~~~  285 (401)
T 4fdw_A          211 PVT-LKEIGSQAFLKTSQLKTIEIPEN-VSTIGQEAFRE-SGITTVKLP-NGVT-NIASRAFYYCPELAEVTTYGSTFND  285 (401)
T ss_dssp             CTT-CCEECTTTTTTCTTCCCEECCTT-CCEECTTTTTT-CCCSEEEEE-TTCC-EECTTTTTTCTTCCEEEEESSCCCC
T ss_pred             CCc-hheehhhHhhCCCCCCEEecCCC-ccCcccccccc-CCccEEEeC-CCcc-EEChhHhhCCCCCCEEEeCCccccC
Confidence            854 77677788999999999999875 55556677777 789999994 4455 677777777899999999888765 


Q ss_pred             ----ccCCcccCCCCCCCEEEccCCcCCCCCChhhhhhhhhhhccchhhhhhccccccceeeceEEEeecCCCCCCCCce
Q 036375          753 ----GEIPSKLSNLSSLQVLDLAENNLTGSIPGSVGDLKAMAHVQNIVKYLLFGRYRGIYYEENLVINTKGSSKDTPRLF  828 (1009)
Q Consensus       753 ----~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  828 (1009)
                          ..-+..|.+|++|+.+++. +.++..-...|.++++|                                       
T Consensus       286 ~~~~~I~~~aF~~c~~L~~l~l~-~~i~~I~~~aF~~c~~L---------------------------------------  325 (401)
T 4fdw_A          286 DPEAMIHPYCLEGCPKLARFEIP-ESIRILGQGLLGGNRKV---------------------------------------  325 (401)
T ss_dssp             CTTCEECTTTTTTCTTCCEECCC-TTCCEECTTTTTTCCSC---------------------------------------
T ss_pred             CcccEECHHHhhCCccCCeEEeC-CceEEEhhhhhcCCCCc---------------------------------------
Confidence                3455678899999999998 45765556677777766                                       


Q ss_pred             eEEEccCCccCCCCCccccCcCCCCeEEccCCcccccCCCCccCCC-CCCEEeCCCCcCC
Q 036375          829 HFIDLSGNNLHGDFPTQLTKLVGLVVLNLSRNHIGGQIPENISGLH-QLASLDLSSNNLS  887 (1009)
Q Consensus       829 ~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~-~L~~L~Ls~N~l~  887 (1009)
                      +.++|..| ++..-+.+|.++ +|+.+++++|.+....+..|.+++ +++.|++..+.+.
T Consensus       326 ~~l~lp~~-l~~I~~~aF~~~-~L~~l~l~~n~~~~l~~~~F~~~~~~l~~l~vp~~~~~  383 (401)
T 4fdw_A          326 TQLTIPAN-VTQINFSAFNNT-GIKEVKVEGTTPPQVFEKVWYGFPDDITVIRVPAESVE  383 (401)
T ss_dssp             CEEEECTT-CCEECTTSSSSS-CCCEEEECCSSCCBCCCSSCCCSCTTCCEEEECGGGHH
T ss_pred             cEEEECcc-ccEEcHHhCCCC-CCCEEEEcCCCCcccccccccCCCCCccEEEeCHHHHH
Confidence            67778544 666667889999 999999999999888888888884 7889998887654

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=99.46  E-value=2.1e-15  Score=152.58  Aligned_cols=153  Identities=24%  Similarity=0.297  Sum_probs=109.8

Q ss_pred             CCCCCEEEccCccccCCCch------hhcCCCCCCEEECcCCcccccCchhhhhcCcCCcEEEccCCcccccCCcccCCC
Q 036375          689 LTRLQSLHLNNNKLTGNLPS------SFQNLTSLETLDLGNNRFSGNIPSLLGNGFVGLRILSLRSNAFSGEIPSKLSNL  762 (1009)
Q Consensus       689 l~~L~~L~L~~N~l~~~~p~------~~~~l~~L~~L~L~~N~l~~~ip~~l~~~l~~L~~L~L~~N~l~~~~p~~l~~l  762 (1009)
                      ...++.++++.+.+++..|.      .+..+++|++|++++|.+++ +| .+. .+++|+.|++++|.++ .+|..+..+
T Consensus        17 ~~~l~~l~l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~l~~-l~-~~~-~l~~L~~L~l~~n~l~-~l~~~~~~~   92 (198)
T 1ds9_A           17 RKSVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEK-IS-SLS-GMENLRILSLGRNLIK-KIENLDAVA   92 (198)
T ss_dssp             TTCCCCTTCSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEEESC-CC-CHH-HHTTCCEEEEEEEEEC-SCSSHHHHH
T ss_pred             cccccCcchheeEeccccCcHhhhhHHHhcCCCCCEEECCCCCCcc-cc-ccc-cCCCCCEEECCCCCcc-cccchhhcC
Confidence            34455555555555554444      67777777777777777763 66 444 3777777777777776 566666666


Q ss_pred             CCCCEEEccCCcCCCCCChhhhhhhhhhhccchhhhhhccccccceeeceEEEeecCCCCCCCCceeEEEccCCccCCCC
Q 036375          763 SSLQVLDLAENNLTGSIPGSVGDLKAMAHVQNIVKYLLFGRYRGIYYEENLVINTKGSSKDTPRLFHFIDLSGNNLHGDF  842 (1009)
Q Consensus       763 ~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~Ls~N~l~~~~  842 (1009)
                      ++|++|++++|++++ +| .+..+++|                                       +.|+|++|++++..
T Consensus        93 ~~L~~L~L~~N~l~~-l~-~~~~l~~L---------------------------------------~~L~l~~N~i~~~~  131 (198)
T 1ds9_A           93 DTLEELWISYNQIAS-LS-GIEKLVNL---------------------------------------RVLYMSNNKITNWG  131 (198)
T ss_dssp             HHCSEEEEEEEECCC-HH-HHHHHHHS---------------------------------------SEEEESEEECCCHH
T ss_pred             CcCCEEECcCCcCCc-CC-ccccCCCC---------------------------------------CEEECCCCcCCchh
Confidence            778888888888876 34 56666666                                       78888888888643


Q ss_pred             C-ccccCcCCCCeEEccCCcccccCCCC----------ccCCCCCCEEeCCCCcCCC
Q 036375          843 P-TQLTKLVGLVVLNLSRNHIGGQIPEN----------ISGLHQLASLDLSSNNLSG  888 (1009)
Q Consensus       843 p-~~l~~l~~L~~L~Ls~N~l~~~~p~~----------l~~l~~L~~L~Ls~N~l~~  888 (1009)
                      + ..+..+++|++|++++|.+++.+|..          +..+++|+.||  +|.++.
T Consensus       132 ~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~l~~L~~Ld--~~~i~~  186 (198)
T 1ds9_A          132 EIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD--GMPVDV  186 (198)
T ss_dssp             HHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHHHHHCSSCSEEC--CGGGTT
T ss_pred             HHHHHhcCCCCCEEEecCCccccccccccchHHHHHHHHHhCCCcEEEC--CcccCH
Confidence            3 57888999999999999999887764          88899999997  677764

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}

Probab=99.46  E-value=2.5e-12  Score=145.06  Aligned_cols=157  Identities=12%  Similarity=0.015  Sum_probs=77.6

Q ss_pred             cCCccccCCCCCCEEEccCCcccccCchhhhcccCCCEEEcCCCcCCCCCCccccccccccCCCCCCCCCcEEECcCCcC
Q 036375          312 KLPSSVANMTSLTNFDLFDKKVEGGIPSSIARLCYLKEFDLSGNNLTGSLPEILQGTDLCVSSNSPLPSLISMRLGNNHL  391 (1009)
Q Consensus       312 ~~p~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l  391 (1009)
                      .....|.++++|+.+.+..+ ++..-..+|.+|++|+.+++..+ ++......|.          .+++|+.+.+..+ +
T Consensus        62 Ig~~AF~~c~~L~~i~lp~~-i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~----------~c~~L~~i~~p~~-l  128 (394)
T 4fs7_A           62 IGYAAFQGCRKVTEIKIPST-VREIGEFAFENCSKLEIINIPDS-VKMIGRCTFS----------GCYALKSILLPLM-L  128 (394)
T ss_dssp             ECTTTTTTCTTEEEEECCTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTTT----------TCTTCCCCCCCTT-C
T ss_pred             hHHHHhhCCCCceEEEeCCC-ccCcchhHhhCCCCCcEEEeCCC-ceEccchhhc----------ccccchhhcccCc-e
Confidence            33455777777777777543 44444556777777777777543 2222222222          4555555544433 2


Q ss_pred             cccCChhhcCCCCCCEEeCcCCcccccCCCCCCCCCCCcEEeCCCCcCCCCCCcccCCCCCCCEEEccCcccccccchhh
Q 036375          392 KGKLPEWLSQLENLVELTLSYNLLQGPIPASLGNLKNLTKLNLPGNQLNGTLPETLGSLPELSVLDVSSNSLTGIISEIH  471 (1009)
Q Consensus       392 ~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~  471 (1009)
                      ......+|..+..++.......  ......+|.+|++|+.+.+.++. .......|.++++|+.+++..+ ++ .+....
T Consensus       129 ~~i~~~aF~~~~~~~~~~~~~~--~~i~~~aF~~c~~L~~i~l~~~~-~~I~~~~F~~c~~L~~i~l~~~-~~-~I~~~~  203 (394)
T 4fs7_A          129 KSIGVEAFKGCDFKEITIPEGV--TVIGDEAFATCESLEYVSLPDSM-ETLHNGLFSGCGKLKSIKLPRN-LK-IIRDYC  203 (394)
T ss_dssp             CEECTTTTTTCCCSEEECCTTC--CEECTTTTTTCTTCCEEECCTTC-CEECTTTTTTCTTCCBCCCCTT-CC-EECTTT
T ss_pred             eeecceeeecccccccccCccc--cccchhhhcccCCCcEEecCCcc-ceeccccccCCCCceEEEcCCC-ce-EeCchh
Confidence            2233334444433322222221  12233456666666666665432 2233344555666666666554 22 233344


Q ss_pred             hccCCCCcEEeCCCC
Q 036375          472 FSRLSKLKFLGLSSN  486 (1009)
Q Consensus       472 ~~~l~~L~~L~L~~n  486 (1009)
                      |.++..|+.+.+..+
T Consensus       204 F~~~~~L~~i~~~~~  218 (394)
T 4fs7_A          204 FAECILLENMEFPNS  218 (394)
T ss_dssp             TTTCTTCCBCCCCTT
T ss_pred             hccccccceeecCCC
Confidence            555666655555443

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}

Probab=99.46  E-value=1.4e-12  Score=147.11  Aligned_cols=37  Identities=14%  Similarity=0.190  Sum_probs=17.1

Q ss_pred             cccCcCCCCeEEccCCcccccCCCCccCCCCCCEEeCC
Q 036375          845 QLTKLVGLVVLNLSRNHIGGQIPENISGLHQLASLDLS  882 (1009)
Q Consensus       845 ~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls  882 (1009)
                      +|.++++|+.+++..| ++.+...+|.++++|+.+++.
T Consensus       338 aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~lp  374 (394)
T 4fs7_A          338 SFRGCTSLSNINFPLS-LRKIGANAFQGCINLKKVELP  374 (394)
T ss_dssp             TTTTCTTCCEECCCTT-CCEECTTTBTTCTTCCEEEEE
T ss_pred             hccCCCCCCEEEECcc-ccEehHHHhhCCCCCCEEEEC
Confidence            4444444444444443 433334445555555555444

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=99.45  E-value=2.5e-13  Score=133.18  Aligned_cols=87  Identities=23%  Similarity=0.216  Sum_probs=78.9

Q ss_pred             eEEEccCCccCCCCCccccCcCCCCeEEccCCcccccCCCCccCCCCCCEEeCCCCcCCCCCcccccCCCCCCeEeCCCC
Q 036375          829 HFIDLSGNNLHGDFPTQLTKLVGLVVLNLSRNHIGGQIPENISGLHQLASLDLSSNNLSGGIPSSLSSLSFLGYINLSRN  908 (1009)
Q Consensus       829 ~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~ls~N  908 (1009)
                      +.|+|++|+|++..|..|.++++|++|+|++|+|++..+..|.++++|++|+|++|+|++..|..|..+++|++|++++|
T Consensus        33 ~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N  112 (170)
T 3g39_A           33 QVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQLKSIPRGAFDNLKSLTHIWLLNN  112 (170)
T ss_dssp             SEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred             cEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCCccCEeCHHHhcCCCCCCEEEeCCC
Confidence            77889999999888888999999999999999999888888899999999999999999888888999999999999999


Q ss_pred             cceecCC
Q 036375          909 QLSGKIP  915 (1009)
Q Consensus       909 ~l~g~ip  915 (1009)
                      ++++..+
T Consensus       113 ~~~c~c~  119 (170)
T 3g39_A          113 PWDCACS  119 (170)
T ss_dssp             CBCTTBG
T ss_pred             CCCCCch
Confidence            9987765

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=99.44  E-value=2.9e-13  Score=133.83  Aligned_cols=106  Identities=23%  Similarity=0.205  Sum_probs=48.6

Q ss_pred             CCCccEEEccCCcccccCCcccccCC-CCCeEEccCCcCCccCcCcccCCCCCCEEECCCCcCcccCCccccCCCCCCEE
Q 036375          617 MPNLIFLSVSGNRLTGKIPGSIGEMQ-LLQVIDLSRNSISGSISSSIGNCTFLKVLDLSYSSLSGVIPASLGQLTRLQSL  695 (1009)
Q Consensus       617 l~~L~~L~Ls~n~l~~~~~~~~~~l~-~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L  695 (1009)
                      +++|++|++++|+++.. +. +..+. +|++|++++|.+++.  ..+..+++|++|++++|++++..+..|..+++|++|
T Consensus        18 ~~~L~~L~l~~n~l~~i-~~-~~~~~~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L   93 (176)
T 1a9n_A           18 AVRDRELDLRGYKIPVI-EN-LGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTEL   93 (176)
T ss_dssp             TTSCEEEECTTSCCCSC-CC-GGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCEE
T ss_pred             cCCceEEEeeCCCCchh-HH-hhhcCCCCCEEECCCCCCCcc--cccccCCCCCEEECCCCcccccCcchhhcCCCCCEE
Confidence            44455555555544432 22 22222 455555555555433  344445555555555555554333333444555555


Q ss_pred             EccCccccCCCch--hhcCCCCCCEEECcCCccc
Q 036375          696 HLNNNKLTGNLPS--SFQNLTSLETLDLGNNRFS  727 (1009)
Q Consensus       696 ~L~~N~l~~~~p~--~~~~l~~L~~L~L~~N~l~  727 (1009)
                      ++++|+++ .+|.  .+..+++|+.|++++|+++
T Consensus        94 ~L~~N~i~-~~~~~~~l~~l~~L~~L~l~~N~i~  126 (176)
T 1a9n_A           94 ILTNNSLV-ELGDLDPLASLKSLTYLCILRNPVT  126 (176)
T ss_dssp             ECCSCCCC-CGGGGGGGGGCTTCCEEECCSSGGG
T ss_pred             ECCCCcCC-cchhhHhhhcCCCCCEEEecCCCCC
Confidence            55555543 2332  3444444444444444444

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=99.43  E-value=2.9e-13  Score=133.79  Aligned_cols=133  Identities=21%  Similarity=0.260  Sum_probs=113.7

Q ss_pred             ccccCCCCCeEEccCCcCCccCcCcccCCC-CCCEEECCCCcCcccCCccccCCCCCCEEEccCccccCCCchhhcCCCC
Q 036375          637 SIGEMQLLQVIDLSRNSISGSISSSIGNCT-FLKVLDLSYSSLSGVIPASLGQLTRLQSLHLNNNKLTGNLPSSFQNLTS  715 (1009)
Q Consensus       637 ~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~-~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~  715 (1009)
                      .+..+.+|++|++++|+++.. |. +..+. +|++|++++|++++.  ..+..+++|++|++++|++++..+..+..+++
T Consensus        14 ~~~~~~~L~~L~l~~n~l~~i-~~-~~~~~~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~   89 (176)
T 1a9n_A           14 QYTNAVRDRELDLRGYKIPVI-EN-LGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQALPD   89 (176)
T ss_dssp             EEECTTSCEEEECTTSCCCSC-CC-GGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHHHHCTT
T ss_pred             hcCCcCCceEEEeeCCCCchh-HH-hhhcCCCCCEEECCCCCCCcc--cccccCCCCCEEECCCCcccccCcchhhcCCC
Confidence            466788999999999999954 54 55544 999999999999976  67899999999999999999765566799999


Q ss_pred             CCEEECcCCcccccCch--hhhhcCcCCcEEEccCCcccccCCcc----cCCCCCCCEEEccCCcCC
Q 036375          716 LETLDLGNNRFSGNIPS--LLGNGFVGLRILSLRSNAFSGEIPSK----LSNLSSLQVLDLAENNLT  776 (1009)
Q Consensus       716 L~~L~L~~N~l~~~ip~--~l~~~l~~L~~L~L~~N~l~~~~p~~----l~~l~~L~~L~Ls~N~l~  776 (1009)
                      |++|++++|.+. .+|.  .+. .+++|+.|++++|+++ .+|..    +..+++|+.||+++|...
T Consensus        90 L~~L~L~~N~i~-~~~~~~~l~-~l~~L~~L~l~~N~i~-~~~~~~~~~~~~l~~L~~Ld~~~n~~~  153 (176)
T 1a9n_A           90 LTELILTNNSLV-ELGDLDPLA-SLKSLTYLCILRNPVT-NKKHYRLYVIYKVPQVRVLDFQKVKLK  153 (176)
T ss_dssp             CCEEECCSCCCC-CGGGGGGGG-GCTTCCEEECCSSGGG-GSTTHHHHHHHHCTTCSEETTEECCHH
T ss_pred             CCEEECCCCcCC-cchhhHhhh-cCCCCCEEEecCCCCC-CcHhHHHHHHHHCCccceeCCCcCCHH
Confidence            999999999996 7776  555 5999999999999998 55664    889999999999999865

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=99.40  E-value=7.1e-13  Score=130.28  Aligned_cols=87  Identities=24%  Similarity=0.230  Sum_probs=74.0

Q ss_pred             eEEEccCCccCCCCCccccCcCCCCeEEccCCcccccCCCCccCCCCCCEEeCCCCcCCCCCcccccCCCCCCeEeCCCC
Q 036375          829 HFIDLSGNNLHGDFPTQLTKLVGLVVLNLSRNHIGGQIPENISGLHQLASLDLSSNNLSGGIPSSLSSLSFLGYINLSRN  908 (1009)
Q Consensus       829 ~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~ls~N  908 (1009)
                      +.|+|++|+|++..|..|+++++|+.|+|++|+|++.++..|.++++|++|+|++|+|++..+..|..+++|++|++++|
T Consensus        36 ~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N  115 (174)
T 2r9u_A           36 QRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNHLKSIPRGAFDNLKSLTHIYLYNN  115 (174)
T ss_dssp             SEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSS
T ss_pred             cEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCCccceeCHHHhccccCCCEEEeCCC
Confidence            77888888888888888888888999999999998877777888999999999999999777777888999999999999


Q ss_pred             cceecCC
Q 036375          909 QLSGKIP  915 (1009)
Q Consensus       909 ~l~g~ip  915 (1009)
                      ++....+
T Consensus       116 ~~~c~~~  122 (174)
T 2r9u_A          116 PWDCECR  122 (174)
T ss_dssp             CBCTTBG
T ss_pred             Ccccccc
Confidence            8876544

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=99.37  E-value=1.9e-12  Score=126.85  Aligned_cols=109  Identities=22%  Similarity=0.274  Sum_probs=86.4

Q ss_pred             CcEEEccCCcccccCCcccCCCCCCCEEEccCCcCCCCCChhhhhhhhhhhccchhhhhhccccccceeeceEEEeecCC
Q 036375          741 LRILSLRSNAFSGEIPSKLSNLSSLQVLDLAENNLTGSIPGSVGDLKAMAHVQNIVKYLLFGRYRGIYYEENLVINTKGS  820 (1009)
Q Consensus       741 L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  820 (1009)
                      .+.+++++|.++ .+|..+.  ++|++|+|++|++++..|..|.+++.|                               
T Consensus        11 ~~~l~~s~n~l~-~ip~~~~--~~l~~L~L~~N~i~~~~~~~~~~l~~L-------------------------------   56 (170)
T 3g39_A           11 GTTVDCSGKSLA-SVPTGIP--TTTQVLYLYDNQITKLEPGVFDRLTQL-------------------------------   56 (170)
T ss_dssp             TTEEECTTSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTC-------------------------------
T ss_pred             CCEEEeCCCCcC-ccCccCC--CCCcEEEcCCCcCCccChhhhcCcccC-------------------------------
Confidence            356666666665 3555442  677778888888877777777777666                               


Q ss_pred             CCCCCCceeEEEccCCccCCCCCccccCcCCCCeEEccCCcccccCCCCccCCCCCCEEeCCCCcCCCCCc
Q 036375          821 SKDTPRLFHFIDLSGNNLHGDFPTQLTKLVGLVVLNLSRNHIGGQIPENISGLHQLASLDLSSNNLSGGIP  891 (1009)
Q Consensus       821 ~~~~~~~l~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip  891 (1009)
                              +.|||++|+|++..|..|.++++|++|+|++|+|++..+..|.++++|++|+|++|.++...+
T Consensus        57 --------~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c~c~  119 (170)
T 3g39_A           57 --------TRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQLKSIPRGAFDNLKSLTHIWLLNNPWDCACS  119 (170)
T ss_dssp             --------SEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCBCTTBG
T ss_pred             --------CEEECCCCCcCccChhhccCCCCCCEEECCCCccCEeCHHHhcCCCCCCEEEeCCCCCCCCch
Confidence                    778888888887777778899999999999999998888889999999999999999987543

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=99.34  E-value=4.2e-12  Score=124.73  Aligned_cols=106  Identities=21%  Similarity=0.278  Sum_probs=84.2

Q ss_pred             cEEEccCCcccccCCcccCCCCCCCEEEccCCcCCCCCChhhhhhhhhhhccchhhhhhccccccceeeceEEEeecCCC
Q 036375          742 RILSLRSNAFSGEIPSKLSNLSSLQVLDLAENNLTGSIPGSVGDLKAMAHVQNIVKYLLFGRYRGIYYEENLVINTKGSS  821 (1009)
Q Consensus       742 ~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  821 (1009)
                      +.+++++|.++ .+|..+.  ++|++|++++|++++..|..|.+++.|                                
T Consensus        15 ~~l~~~~n~l~-~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L--------------------------------   59 (174)
T 2r9u_A           15 TLVNCQNIRLA-SVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNL--------------------------------   59 (174)
T ss_dssp             SEEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTC--------------------------------
T ss_pred             cEEEeCCCCCC-ccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCC--------------------------------
Confidence            45666666664 5555443  677778888888877777777777666                                


Q ss_pred             CCCCCceeEEEccCCccCCCCCccccCcCCCCeEEccCCcccccCCCCccCCCCCCEEeCCCCcCCCC
Q 036375          822 KDTPRLFHFIDLSGNNLHGDFPTQLTKLVGLVVLNLSRNHIGGQIPENISGLHQLASLDLSSNNLSGG  889 (1009)
Q Consensus       822 ~~~~~~l~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~  889 (1009)
                             +.|+|++|+|++..+..|.++++|++|+|++|+|++.++..|..+++|+.|+|++|.+...
T Consensus        60 -------~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~~~c~  120 (174)
T 2r9u_A           60 -------QQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNHLKSIPRGAFDNLKSLTHIYLYNNPWDCE  120 (174)
T ss_dssp             -------CEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCBCTT
T ss_pred             -------CEEECCCCCCCccChhHhCCcchhhEEECCCCccceeCHHHhccccCCCEEEeCCCCcccc
Confidence                   7788888888876666788999999999999999988877899999999999999999864

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=99.27  E-value=1.1e-13  Score=153.74  Aligned_cols=43  Identities=28%  Similarity=0.265  Sum_probs=18.8

Q ss_pred             ccCcCCCCeEEccCCccccc----CCCCccCCCCCCEEeCCCCcCCC
Q 036375          846 LTKLVGLVVLNLSRNHIGGQ----IPENISGLHQLASLDLSSNNLSG  888 (1009)
Q Consensus       846 l~~l~~L~~L~Ls~N~l~~~----~p~~l~~l~~L~~L~Ls~N~l~~  888 (1009)
                      +...++|+.|+|++|.|++.    ++..+...++|++|||++|.|+.
T Consensus       207 L~~~~~L~~L~Ls~N~i~~~g~~~l~~~L~~~~~L~~L~Ls~N~i~~  253 (372)
T 3un9_A          207 LDRNRQLQELNVAYNGAGDTAALALARAAREHPSLELLHLYFNELSS  253 (372)
T ss_dssp             GGGCSCCCEEECCSSCCCHHHHHHHHHHHHHCSSCCEEECTTSSCCH
T ss_pred             HhcCCCcCeEECCCCCCCHHHHHHHHHHHHhCCCCCEEeccCCCCCH
Confidence            33344455555555554432    22223333445555555555443

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}

Probab=99.23  E-value=9.9e-10  Score=123.75  Aligned_cols=133  Identities=17%  Similarity=0.253  Sum_probs=68.2

Q ss_pred             CcccccCCCCCeEEccCCcCCccCcCcccCCCCCCEEECCCCcCcccCCccccCCCCCCEEEccCccccCCCchhhcCCC
Q 036375          635 PGSIGEMQLLQVIDLSRNSISGSISSSIGNCTFLKVLDLSYSSLSGVIPASLGQLTRLQSLHLNNNKLTGNLPSSFQNLT  714 (1009)
Q Consensus       635 ~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~  714 (1009)
                      ..+|.++..|+.+.+.++.. .+...+|.+++.|+.+.+. +.++.+...+|.++.+|+.+++..+ ++..-..+|.+|+
T Consensus       258 ~~aF~~c~~L~~i~lp~~~~-~I~~~aF~~c~~L~~i~l~-~~i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~C~  334 (394)
T 4gt6_A          258 THAFDSCAYLASVKMPDSVV-SIGTGAFMNCPALQDIEFS-SRITELPESVFAGCISLKSIDIPEG-ITQILDDAFAGCE  334 (394)
T ss_dssp             TTTTTTCSSCCEEECCTTCC-EECTTTTTTCTTCCEEECC-TTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCT
T ss_pred             cceeeecccccEEecccccc-eecCcccccccccccccCC-CcccccCceeecCCCCcCEEEeCCc-ccEehHhHhhCCC
Confidence            34555555566655544332 2344555666666666664 3344444455666666666666543 4434445666666


Q ss_pred             CCCEEECcCCcccccCchhhhhcCcCCcEEEccCCcccccCCcccCCCCCCCEEEccCCcC
Q 036375          715 SLETLDLGNNRFSGNIPSLLGNGFVGLRILSLRSNAFSGEIPSKLSNLSSLQVLDLAENNL  775 (1009)
Q Consensus       715 ~L~~L~L~~N~l~~~ip~~l~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l  775 (1009)
                      +|+.+.+..+ ++ .|....+.++++|+.+++.++....   ..+..+.+|+.+.+..|.+
T Consensus       335 ~L~~i~ip~s-v~-~I~~~aF~~C~~L~~i~~~~~~~~~---~~~~~~~~L~~i~i~~~~~  390 (394)
T 4gt6_A          335 QLERIAIPSS-VT-KIPESAFSNCTALNNIEYSGSRSQW---NAISTDSGLQNLPVAPGSI  390 (394)
T ss_dssp             TCCEEEECTT-CC-BCCGGGGTTCTTCCEEEESSCHHHH---HTCBCCCCC----------
T ss_pred             CCCEEEECcc-cC-EEhHhHhhCCCCCCEEEECCceeeh---hhhhccCCCCEEEeCCCCE
Confidence            6666666543 33 5555555556666666666654331   3455666677776665543

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}

Probab=99.23  E-value=8.3e-10  Score=124.39  Aligned_cols=110  Identities=18%  Similarity=0.285  Sum_probs=51.9

Q ss_pred             cCcccCCCCCCEEECCCCcCcccCCccccCCCCCCEEEccCccccCCCchhhcCCCCCCEEECcCCcccccCchhhhhcC
Q 036375          659 SSSIGNCTFLKVLDLSYSSLSGVIPASLGQLTRLQSLHLNNNKLTGNLPSSFQNLTSLETLDLGNNRFSGNIPSLLGNGF  738 (1009)
Q Consensus       659 p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~ip~~l~~~l  738 (1009)
                      ..+|.+|..|+.+.+..+... +...+|.++++|+.+.+. +.++.....+|.+|.+|+.+++..+ ++ .|....+.++
T Consensus       258 ~~aF~~c~~L~~i~lp~~~~~-I~~~aF~~c~~L~~i~l~-~~i~~I~~~aF~~c~~L~~i~lp~~-v~-~I~~~aF~~C  333 (394)
T 4gt6_A          258 THAFDSCAYLASVKMPDSVVS-IGTGAFMNCPALQDIEFS-SRITELPESVFAGCISLKSIDIPEG-IT-QILDDAFAGC  333 (394)
T ss_dssp             TTTTTTCSSCCEEECCTTCCE-ECTTTTTTCTTCCEEECC-TTCCEECTTTTTTCTTCCEEECCTT-CC-EECTTTTTTC
T ss_pred             cceeeecccccEEecccccce-ecCcccccccccccccCC-CcccccCceeecCCCCcCEEEeCCc-cc-EehHhHhhCC
Confidence            344555555555555433222 334445555555555553 2333333344555555555555443 22 3444444445


Q ss_pred             cCCcEEEccCCcccccCCcccCCCCCCCEEEccCC
Q 036375          739 VGLRILSLRSNAFSGEIPSKLSNLSSLQVLDLAEN  773 (1009)
Q Consensus       739 ~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N  773 (1009)
                      .+|+.+.+..+ ++..-...|.+|++|+.+++.++
T Consensus       334 ~~L~~i~ip~s-v~~I~~~aF~~C~~L~~i~~~~~  367 (394)
T 4gt6_A          334 EQLERIAIPSS-VTKIPESAFSNCTALNNIEYSGS  367 (394)
T ss_dssp             TTCCEEEECTT-CCBCCGGGGTTCTTCCEEEESSC
T ss_pred             CCCCEEEECcc-cCEEhHhHhhCCCCCCEEEECCc
Confidence            55555555433 33222344555555555555544

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=99.16  E-value=4.2e-11  Score=132.75  Aligned_cols=83  Identities=23%  Similarity=0.156  Sum_probs=44.0

Q ss_pred             eEEEccC-CccCCCCCccccCcCCCCeEEccCCcccccCCCCccCCCCCCEEeCCCCcCCCCCcccccCCCCCCeEeCCC
Q 036375          829 HFIDLSG-NNLHGDFPTQLTKLVGLVVLNLSRNHIGGQIPENISGLHQLASLDLSSNNLSGGIPSSLSSLSFLGYINLSR  907 (1009)
Q Consensus       829 ~~L~Ls~-N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~ls~  907 (1009)
                      +.|+|++ |+|++..|..|+++++|+.|+|++|+|++.+|..|+++++|++|||++|+|++..|..+..++ |++|++++
T Consensus        34 ~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~-L~~l~l~~  112 (347)
T 2ifg_A           34 TELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALESLSWKTVQGLS-LQELVLSG  112 (347)
T ss_dssp             SEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSCCSCCCSTTTCSCC-CCEEECCS
T ss_pred             eEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCCccceeCHHHcccCC-ceEEEeeC
Confidence            4444543 455444445555555555555555555555555555555555555555555554444444444 55555555


Q ss_pred             Cccee
Q 036375          908 NQLSG  912 (1009)
Q Consensus       908 N~l~g  912 (1009)
                      |++..
T Consensus       113 N~~~c  117 (347)
T 2ifg_A          113 NPLHC  117 (347)
T ss_dssp             SCCCC
T ss_pred             CCccC
Confidence            55543

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=99.13  E-value=2.2e-12  Score=143.16  Aligned_cols=161  Identities=16%  Similarity=0.162  Sum_probs=83.6

Q ss_pred             CCccEEEccCCcCCCcCCchhh----cCCCCccEEEccCCcccccCCcccc-cCCCCCeEEccCCcCCccCcCcc-----
Q 036375          593 VEIELLDLSNNHFSGPIPQNIS----GSMPNLIFLSVSGNRLTGKIPGSIG-EMQLLQVIDLSRNSISGSISSSI-----  662 (1009)
Q Consensus       593 ~~L~~L~Ls~n~l~~~ip~~~~----~~l~~L~~L~Ls~n~l~~~~~~~~~-~l~~L~~L~Ls~N~l~~~~p~~l-----  662 (1009)
                      ..++.|++++|.++......+.    ...++|++|+|++|.++......+. .+++|+.|+|++|.++......+     
T Consensus        72 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L~  151 (372)
T 3un9_A           72 SSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLL  151 (372)
T ss_dssp             TTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHHH
T ss_pred             hhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHHH
Confidence            5677777777776532221111    1235677777777766543222222 34556666666666654333333     


Q ss_pred             cCCCCCCEEECCCCcCccc----CCccccCCCCCCEEEccCccccCC----CchhhcCCCCCCEEECcCCcccccCchhh
Q 036375          663 GNCTFLKVLDLSYSSLSGV----IPASLGQLTRLQSLHLNNNKLTGN----LPSSFQNLTSLETLDLGNNRFSGNIPSLL  734 (1009)
Q Consensus       663 ~~l~~L~~L~Ls~N~l~~~----~p~~~~~l~~L~~L~L~~N~l~~~----~p~~~~~l~~L~~L~L~~N~l~~~ip~~l  734 (1009)
                      ...++|++|+|++|.++..    ++..+..+++|++|+|++|.++..    ++..+..+++|++|+|++|.+++.....+
T Consensus       152 ~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~l  231 (372)
T 3un9_A          152 HDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALAL  231 (372)
T ss_dssp             STTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHHH
T ss_pred             hcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHHH
Confidence            2345666666666666542    223334556666666666665532    23444555566666666666653222111


Q ss_pred             hh---cCcCCcEEEccCCcccc
Q 036375          735 GN---GFVGLRILSLRSNAFSG  753 (1009)
Q Consensus       735 ~~---~l~~L~~L~L~~N~l~~  753 (1009)
                      ..   ..++|+.|+|++|.+++
T Consensus       232 ~~~L~~~~~L~~L~Ls~N~i~~  253 (372)
T 3un9_A          232 ARAAREHPSLELLHLYFNELSS  253 (372)
T ss_dssp             HHHHHHCSSCCEEECTTSSCCH
T ss_pred             HHHHHhCCCCCEEeccCCCCCH
Confidence            11   24555555555555543

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=99.10  E-value=1.2e-10  Score=128.94  Aligned_cols=107  Identities=20%  Similarity=0.202  Sum_probs=92.6

Q ss_pred             eEEEccCC-ccCCCCCccccCcCCCCeEEccC-CcccccCCCCccCCCCCCEEeCCCCcCCCCCcccccCCCCCCeEeCC
Q 036375          829 HFIDLSGN-NLHGDFPTQLTKLVGLVVLNLSR-NHIGGQIPENISGLHQLASLDLSSNNLSGGIPSSLSSLSFLGYINLS  906 (1009)
Q Consensus       829 ~~L~Ls~N-~l~~~~p~~l~~l~~L~~L~Ls~-N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~ls  906 (1009)
                      ..++++++ ++++ +|. +..+++|+.|+|++ |+|++.+|..|+++++|+.|+|++|+|++.+|..|.++++|++|||+
T Consensus        11 ~~v~~~~~n~l~~-ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~   88 (347)
T 2ifg_A           11 SGLRCTRDGALDS-LHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLS   88 (347)
T ss_dssp             SCEECCSSCCCTT-TTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECC
T ss_pred             CEEEcCCCCCCCc-cCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCC
Confidence            45799998 8985 788 99999999999996 99999999999999999999999999999999999999999999999


Q ss_pred             CCcceecCCCCCCCCcccCCcCCCCCCCCCC
Q 036375          907 RNQLSGKIPFEGHMTTFDASSFAGNPGLCGD  937 (1009)
Q Consensus       907 ~N~l~g~ip~~~~~~~~~~~~~~~n~~lc~~  937 (1009)
                      +|+|++..|.......+....+.+|+.-|.+
T Consensus        89 ~N~l~~~~~~~~~~~~L~~l~l~~N~~~c~c  119 (347)
T 2ifg_A           89 FNALESLSWKTVQGLSLQELVLSGNPLHCSC  119 (347)
T ss_dssp             SSCCSCCCSTTTCSCCCCEEECCSSCCCCCG
T ss_pred             CCccceeCHHHcccCCceEEEeeCCCccCCC
Confidence            9999976654333233566677899988854

>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}

Probab=98.97  E-value=4.7e-08  Score=109.49  Aligned_cols=128  Identities=20%  Similarity=0.218  Sum_probs=60.0

Q ss_pred             cCCCCccEEEccCCcccccCCcccccCCCCCeEEccCCcCCccCcCcccCCCCCCEEECCCCcCcccCCccccCCCCCCE
Q 036375          615 GSMPNLIFLSVSGNRLTGKIPGSIGEMQLLQVIDLSRNSISGSISSSIGNCTFLKVLDLSYSSLSGVIPASLGQLTRLQS  694 (1009)
Q Consensus       615 ~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~  694 (1009)
                      ..+..|+.+.+..+ ++.+...+|.++..|+.+.+..+ ++.+...+|.++.+|+.+.+..+ +......+|.++++|+.
T Consensus       214 ~~~~~l~~i~~~~~-~~~i~~~~f~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~~-i~~i~~~aF~~c~~L~~  290 (379)
T 4h09_A          214 SYGKNLKKITITSG-VTTLGDGAFYGMKALDEIAIPKN-VTSIGSFLLQNCTALKTLNFYAK-VKTVPYLLCSGCSNLTK  290 (379)
T ss_dssp             TTCSSCSEEECCTT-CCEECTTTTTTCSSCCEEEECTT-CCEECTTTTTTCTTCCEEEECCC-CSEECTTTTTTCTTCCE
T ss_pred             ccccccceeeeccc-eeEEccccccCCccceEEEcCCC-ccEeCccccceeehhcccccccc-ceecccccccccccccc
Confidence            33444454444332 23333344555555555555443 33334444555555555555432 33333344555555555


Q ss_pred             EEccCccccCCCchhhcCCCCCCEEECcCCcccccCchhhhhcCcCCcEEEcc
Q 036375          695 LHLNNNKLTGNLPSSFQNLTSLETLDLGNNRFSGNIPSLLGNGFVGLRILSLR  747 (1009)
Q Consensus       695 L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~ip~~l~~~l~~L~~L~L~  747 (1009)
                      +.+.++.++..-..+|.+|++|+.++|..+ ++ .|+...+.++++|+.+.+.
T Consensus       291 i~l~~~~i~~I~~~aF~~c~~L~~i~lp~~-l~-~I~~~aF~~C~~L~~i~ip  341 (379)
T 4h09_A          291 VVMDNSAIETLEPRVFMDCVKLSSVTLPTA-LK-TIQVYAFKNCKALSTISYP  341 (379)
T ss_dssp             EEECCTTCCEECTTTTTTCTTCCEEECCTT-CC-EECTTTTTTCTTCCCCCCC
T ss_pred             ccccccccceehhhhhcCCCCCCEEEcCcc-cc-EEHHHHhhCCCCCCEEEEC
Confidence            555555554444445555555555555433 22 3444444344555544443

>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}

Probab=98.86  E-value=2.6e-07  Score=103.31  Aligned_cols=110  Identities=15%  Similarity=0.157  Sum_probs=65.2

Q ss_pred             hhhcCCCCccEEEccCCcccccCCcccccCCCCCeEEccCCcCCccCcCcccCCCCCCEEECCCCcCcccCCccccCCCC
Q 036375          612 NISGSMPNLIFLSVSGNRLTGKIPGSIGEMQLLQVIDLSRNSISGSISSSIGNCTFLKVLDLSYSSLSGVIPASLGQLTR  691 (1009)
Q Consensus       612 ~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~  691 (1009)
                      ..+..+..|+.+.+..+ ++.+...+|.++.+|+.+.+..+ +.......|.+|++|+.+.+.++.++.+...+|.++.+
T Consensus       234 ~~f~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~~-i~~i~~~aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~~  311 (379)
T 4h09_A          234 GAFYGMKALDEIAIPKN-VTSIGSFLLQNCTALKTLNFYAK-VKTVPYLLCSGCSNLTKVVMDNSAIETLEPRVFMDCVK  311 (379)
T ss_dssp             TTTTTCSSCCEEEECTT-CCEECTTTTTTCTTCCEEEECCC-CSEECTTTTTTCTTCCEEEECCTTCCEECTTTTTTCTT
T ss_pred             ccccCCccceEEEcCCC-ccEeCccccceeehhcccccccc-ceeccccccccccccccccccccccceehhhhhcCCCC
Confidence            34444555555555543 44444555666666666666533 44344456666677777777666666555666667777


Q ss_pred             CCEEEccCccccCCCchhhcCCCCCCEEECcCC
Q 036375          692 LQSLHLNNNKLTGNLPSSFQNLTSLETLDLGNN  724 (1009)
Q Consensus       692 L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N  724 (1009)
                      |+.+.|..+ ++..-..+|.+|++|+.+.+..+
T Consensus       312 L~~i~lp~~-l~~I~~~aF~~C~~L~~i~ip~~  343 (379)
T 4h09_A          312 LSSVTLPTA-LKTIQVYAFKNCKALSTISYPKS  343 (379)
T ss_dssp             CCEEECCTT-CCEECTTTTTTCTTCCCCCCCTT
T ss_pred             CCEEEcCcc-ccEEHHHHhhCCCCCCEEEECCc
Confidence            777777543 44444556777777777766543

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=98.73  E-value=5.3e-09  Score=114.79  Aligned_cols=55  Identities=18%  Similarity=0.356  Sum_probs=34.3

Q ss_pred             eEEEccCCccCCC----CCccccCcCCCCeEEccCCcccccCCCCccC-CCCCCEEeCCCCc
Q 036375          829 HFIDLSGNNLHGD----FPTQLTKLVGLVVLNLSRNHIGGQIPENISG-LHQLASLDLSSNN  885 (1009)
Q Consensus       829 ~~L~Ls~N~l~~~----~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~-l~~L~~L~Ls~N~  885 (1009)
                      +.|||+.|.+++.    ++..+..+++|+.|+|++|.++...-..+.. +  ...+|+++|+
T Consensus       282 ~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~d~~~~~l~~al--g~~~~~~~~~  341 (362)
T 2ra8_A          282 ETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLSDEMKKELQKSL--PMKIDVSDSQ  341 (362)
T ss_dssp             SEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCCHHHHHHHHHHC--CSEEECCSBC
T ss_pred             CEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCCHHHHHHHHHHc--CCEEEecCCc
Confidence            6677777777653    3334456677888888888776543333332 2  3567787776

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=98.69  E-value=1.3e-08  Score=111.79  Aligned_cols=60  Identities=20%  Similarity=0.306  Sum_probs=46.0

Q ss_pred             CcCCCCeEEccCCccccc----CCCCccCCCCCCEEeCCCCcCCCCCcccccC-CCCCCeEeCCCCc
Q 036375          848 KLVGLVVLNLSRNHIGGQ----IPENISGLHQLASLDLSSNNLSGGIPSSLSS-LSFLGYINLSRNQ  909 (1009)
Q Consensus       848 ~l~~L~~L~Ls~N~l~~~----~p~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~-l~~L~~L~ls~N~  909 (1009)
                      .+++|++|+|+.|.+++.    ++..+..+++|+.|+|++|.++...-..+.. +  ...+++++|+
T Consensus       277 ~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~d~~~~~l~~al--g~~~~~~~~~  341 (362)
T 2ra8_A          277 ILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLSDEMKKELQKSL--PMKIDVSDSQ  341 (362)
T ss_dssp             SGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCCHHHHHHHHHHC--CSEEECCSBC
T ss_pred             cCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCCHHHHHHHHHHc--CCEEEecCCc
Confidence            467899999999999874    4556677899999999999988654444443 2  3668999886

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=98.29  E-value=6.7e-08  Score=100.24  Aligned_cols=61  Identities=28%  Similarity=0.390  Sum_probs=28.4

Q ss_pred             eEEEccCCccCC--CCCccccCcCCCCeEEccCCcccccCCCCccCCC--CCCEEeCCCCcCCCCCc
Q 036375          829 HFIDLSGNNLHG--DFPTQLTKLVGLVVLNLSRNHIGGQIPENISGLH--QLASLDLSSNNLSGGIP  891 (1009)
Q Consensus       829 ~~L~Ls~N~l~~--~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~--~L~~L~Ls~N~l~~~ip  891 (1009)
                      +.|+||+|+|++  .+|..+..+++|+.|+|++|+|++.  +.+..++  +|++|+|++|.+++.+|
T Consensus       173 ~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~--~~l~~l~~l~L~~L~L~~Npl~~~~~  237 (267)
T 3rw6_A          173 LSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE--RELDKIKGLKLEELWLDGNSLCDTFR  237 (267)
T ss_dssp             CEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG--GGGGGGTTSCCSEEECTTSTTGGGCS
T ss_pred             CEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc--hhhhhcccCCcceEEccCCcCccccC
Confidence            444444444444  2334444555555555555555543  2222222  55555555555554443

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=98.29  E-value=1.4e-07  Score=93.29  Aligned_cols=83  Identities=20%  Similarity=0.216  Sum_probs=48.6

Q ss_pred             eEEEccCCccCCC----CCccccCcCCCCeEEccCCccccc----CCCCccCCCCCCEEeC--CCCcCCCC----Ccccc
Q 036375          829 HFIDLSGNNLHGD----FPTQLTKLVGLVVLNLSRNHIGGQ----IPENISGLHQLASLDL--SSNNLSGG----IPSSL  894 (1009)
Q Consensus       829 ~~L~Ls~N~l~~~----~p~~l~~l~~L~~L~Ls~N~l~~~----~p~~l~~l~~L~~L~L--s~N~l~~~----ip~~l  894 (1009)
                      +.|||++|.++..    +...+...+.|++|+|++|.|+..    +.+.+...++|++|+|  ++|.++..    +...+
T Consensus        68 ~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L  147 (185)
T 1io0_A           68 KKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANML  147 (185)
T ss_dssp             CEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHH
T ss_pred             CEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHHHHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHH
Confidence            4444444444332    223344445666777777766643    3455666667777777  66777643    33445


Q ss_pred             cCCCCCCeEeCCCCcce
Q 036375          895 SSLSFLGYINLSRNQLS  911 (1009)
Q Consensus       895 ~~l~~L~~L~ls~N~l~  911 (1009)
                      ...+.|++|++++|++.
T Consensus       148 ~~n~~L~~L~L~~n~i~  164 (185)
T 1io0_A          148 EKNTTLLKFGYHFTQQG  164 (185)
T ss_dssp             HHCSSCCEEECCCSSHH
T ss_pred             HhCCCcCEEeccCCCCC
Confidence            55577777777777663

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=98.27  E-value=2.2e-07  Score=91.87  Aligned_cols=64  Identities=9%  Similarity=0.129  Sum_probs=27.3

Q ss_pred             CCCCccEEEccCC-ccccc----CCcccccCCCCCeEEccCCcCCcc----CcCcccCCCCCCEEECCCCcCc
Q 036375          616 SMPNLIFLSVSGN-RLTGK----IPGSIGEMQLLQVIDLSRNSISGS----ISSSIGNCTFLKVLDLSYSSLS  679 (1009)
Q Consensus       616 ~l~~L~~L~Ls~n-~l~~~----~~~~~~~l~~L~~L~Ls~N~l~~~----~p~~l~~l~~L~~L~Ls~N~l~  679 (1009)
                      ..+.|++|+|++| .+...    +...+...++|++|+|++|.+...    +...+...++|++|+|++|.|.
T Consensus        34 ~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~  106 (185)
T 1io0_A           34 NDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFIS  106 (185)
T ss_dssp             TCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCC
T ss_pred             cCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCC
Confidence            3455555555555 44422    122233344455555555554321    1222233344444444444444

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=98.23  E-value=2.8e-07  Score=95.55  Aligned_cols=84  Identities=24%  Similarity=0.245  Sum_probs=66.7

Q ss_pred             EEccCCccC---CCCCccccCcCCCCeEEccCCcccc--cCCCCccCCCCCCEEeCCCCcCCCCCcccccCCC--CCCeE
Q 036375          831 IDLSGNNLH---GDFPTQLTKLVGLVVLNLSRNHIGG--QIPENISGLHQLASLDLSSNNLSGGIPSSLSSLS--FLGYI  903 (1009)
Q Consensus       831 L~Ls~N~l~---~~~p~~l~~l~~L~~L~Ls~N~l~~--~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~--~L~~L  903 (1009)
                      ++++.|+..   +.++....++++|+.|+||+|+|++  .+|..+..+++|+.|||++|+|++.  ..+..++  .|++|
T Consensus       148 l~l~~N~~~~~~~~l~i~~~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~--~~l~~l~~l~L~~L  225 (267)
T 3rw6_A          148 IDVVLNRRSCMAATLRIIEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE--RELDKIKGLKLEEL  225 (267)
T ss_dssp             CCCCTTSHHHHHHHHHHHHHHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG--GGGGGGTTSCCSEE
T ss_pred             ccccCCHHHHHHHHHHHHHhhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc--hhhhhcccCCcceE
Confidence            567777432   2233333678899999999999998  5667788999999999999999976  3455555  99999


Q ss_pred             eCCCCcceecCCC
Q 036375          904 NLSRNQLSGKIPF  916 (1009)
Q Consensus       904 ~ls~N~l~g~ip~  916 (1009)
                      ++++|++++.+|.
T Consensus       226 ~L~~Npl~~~~~~  238 (267)
T 3rw6_A          226 WLDGNSLCDTFRD  238 (267)
T ss_dssp             ECTTSTTGGGCSS
T ss_pred             EccCCcCccccCc
Confidence            9999999998773

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=97.74  E-value=8.7e-06  Score=77.94  Aligned_cols=35  Identities=11%  Similarity=0.052  Sum_probs=18.6

Q ss_pred             CCcEEEccCCcCcccCCcccCCCCCCCEEEcCCCC
Q 036375          248 TLVYVDLSDCDLYGRIPIGFGELPNLQYLSLAGNN  282 (1009)
Q Consensus       248 ~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~L~~n~  282 (1009)
                      +|++||+++|.++..--..+..+++|++|+|++|.
T Consensus        62 ~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~   96 (176)
T 3e4g_A           62 KIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCH   96 (176)
T ss_dssp             CEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCT
T ss_pred             eEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCC
Confidence            45555555555544333344555555666555554

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=97.55  E-value=1.9e-05  Score=75.62  Aligned_cols=82  Identities=15%  Similarity=0.168  Sum_probs=36.1

Q ss_pred             CCeEEccCCcCCccCcCcccCCCCCCEEECCCCc-CcccCCccccCC----CCCCEEEccCcc-ccCCCchhhcCCCCCC
Q 036375          644 LQVIDLSRNSISGSISSSIGNCTFLKVLDLSYSS-LSGVIPASLGQL----TRLQSLHLNNNK-LTGNLPSSFQNLTSLE  717 (1009)
Q Consensus       644 L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~-l~~~~p~~~~~l----~~L~~L~L~~N~-l~~~~p~~~~~l~~L~  717 (1009)
                      |+.||++++.++..--..+.+|++|+.|+|++|. +++..-..+..+    ++|++|+|++|. ++..--..+..+++|+
T Consensus        63 L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~L~  142 (176)
T 3e4g_A           63 IQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRNLK  142 (176)
T ss_dssp             EEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTTCC
T ss_pred             EeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCCCC
Confidence            3444444444333322334444445555554442 333222223322    245555555553 4432223345556666


Q ss_pred             EEECcCCc
Q 036375          718 TLDLGNNR  725 (1009)
Q Consensus       718 ~L~L~~N~  725 (1009)
                      .|++++++
T Consensus       143 ~L~L~~c~  150 (176)
T 3e4g_A          143 YLFLSDLP  150 (176)
T ss_dssp             EEEEESCT
T ss_pred             EEECCCCC
Confidence            66666554

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1

Probab=96.84  E-value=0.00044  Score=67.47  Aligned_cols=63  Identities=17%  Similarity=0.237  Sum_probs=28.3

Q ss_pred             CCCccEEEccCC-ccccc----CCcccccCCCCCeEEccCCcCCccCc----CcccCCCCCCEEECCCCcCc
Q 036375          617 MPNLIFLSVSGN-RLTGK----IPGSIGEMQLLQVIDLSRNSISGSIS----SSIGNCTFLKVLDLSYSSLS  679 (1009)
Q Consensus       617 l~~L~~L~Ls~n-~l~~~----~~~~~~~l~~L~~L~Ls~N~l~~~~p----~~l~~l~~L~~L~Ls~N~l~  679 (1009)
                      -+.|++|+|++| ++...    +..++..-+.|+.|+|++|++.....    ..+..-+.|+.|+|++|.|.
T Consensus        40 n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig  111 (197)
T 1pgv_A           40 DTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLT  111 (197)
T ss_dssp             CSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCC
T ss_pred             CCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCC
Confidence            344555555553 44321    22233334455555555555543221    22223345555555555554

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*

Probab=96.76  E-value=0.0022  Score=58.40  Aligned_cols=56  Identities=23%  Similarity=0.333  Sum_probs=33.9

Q ss_pred             eEEccCCccc-ccCCCCccCCCCCCEEeCCCCcCCCCCcccccCCCCCCeEeCCCCcce
Q 036375          854 VLNLSRNHIG-GQIPENISGLHQLASLDLSSNNLSGGIPSSLSSLSFLGYINLSRNQLS  911 (1009)
Q Consensus       854 ~L~Ls~N~l~-~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~ls~N~l~  911 (1009)
                      .++.+++.++ ..+|..+.  ++|+.|||++|+|+...+..|..+++|++|+|++|++.
T Consensus        12 ~v~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~   68 (130)
T 3rfe_A           12 LVDCGRRGLTWASLPTAFP--VDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWR   68 (130)
T ss_dssp             EEECCSSCCCTTTSCSCCC--TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCB
T ss_pred             EEEeCCCCCccccCCCCCC--cCCCEEECCCCcCCccChhhhhhccccCEEEecCCCee
Confidence            4555555554 23443332  34667777777777666666667777777777777654

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1

Probab=96.76  E-value=0.00072  Score=65.94  Aligned_cols=64  Identities=16%  Similarity=0.232  Sum_probs=29.7

Q ss_pred             cCCCCCeEEccCC-cCCcc----CcCcccCCCCCCEEECCCCcCcccCCc----cccCCCCCCEEEccCcccc
Q 036375          640 EMQLLQVIDLSRN-SISGS----ISSSIGNCTFLKVLDLSYSSLSGVIPA----SLGQLTRLQSLHLNNNKLT  703 (1009)
Q Consensus       640 ~l~~L~~L~Ls~N-~l~~~----~p~~l~~l~~L~~L~Ls~N~l~~~~p~----~~~~l~~L~~L~L~~N~l~  703 (1009)
                      +-+.|++|+|++| ++...    +...+..-+.|+.|+|++|.+......    .+..-+.|++|+|++|.|.
T Consensus        39 ~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig  111 (197)
T 1pgv_A           39 DDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLT  111 (197)
T ss_dssp             TCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCC
T ss_pred             cCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCC
Confidence            3455666666654 54321    223344445555555555555433211    2223344445555444444

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*

Probab=96.40  E-value=0.0049  Score=56.11  Aligned_cols=57  Identities=23%  Similarity=0.342  Sum_probs=49.3

Q ss_pred             eEEEccCCccC-CCCCccccCcCCCCeEEccCCcccccCCCCccCCCCCCEEeCCCCcCC
Q 036375          829 HFIDLSGNNLH-GDFPTQLTKLVGLVVLNLSRNHIGGQIPENISGLHQLASLDLSSNNLS  887 (1009)
Q Consensus       829 ~~L~Ls~N~l~-~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~  887 (1009)
                      ..+|.+++.++ ..+|..+.  .+|+.|+|++|+|+...+..|..+++|+.|+|++|.+.
T Consensus        11 ~~v~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~   68 (130)
T 3rfe_A           11 TLVDCGRRGLTWASLPTAFP--VDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWR   68 (130)
T ss_dssp             TEEECCSSCCCTTTSCSCCC--TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCB
T ss_pred             CEEEeCCCCCccccCCCCCC--cCCCEEECCCCcCCccChhhhhhccccCEEEecCCCee
Confidence            57899999997 46675543  36899999999999988899999999999999999886

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	1009
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	9e-27
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	5e-19
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	3e-15
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	9e-13
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	7e-12
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	6e-09
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	1e-05
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	0.003
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	2e-22
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	2e-21
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	3e-15
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	3e-13
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	3e-12
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	3e-11
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	2e-10
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	2e-19
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	5e-18
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	2e-16
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	2e-16
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	5e-12
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	5e-12
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	2e-05
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	3e-15
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	5e-15
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	7e-13
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	8e-12
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	7e-09
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	2e-07
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	2e-11
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	1e-10
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	3e-08
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	3e-08
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	5e-07
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	1e-05
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	0.003
d2astb2	284	c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1	1e-10
d2astb2	284	c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1	2e-08
d2astb2	284	c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1	1e-07
d2astb2	284	c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1	3e-07
d2astb2	284	c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1	7e-06
d2astb2	284	c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1	6e-04
d2astb2	284	c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1	0.001
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	3e-10
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	4e-09
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	5e-08
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	1e-06
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	1e-06
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	2e-06
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	2e-06
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	4e-05
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	6e-04
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	2e-09
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	1e-07
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	2e-07
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	3e-07
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	4e-07
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	6e-07
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	1e-06
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	2e-06
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	9e-06
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	1e-05
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	2e-05
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	5e-05
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	2e-04
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	2e-04
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	0.003
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	0.003
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	0.004
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	2e-09
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	1e-06
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	4e-06
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	1e-04
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	1e-04
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	2e-04
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	0.003
d2ca6a1	344	c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal dom	2e-08
d2ca6a1	344	c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal dom	3e-06
d2ca6a1	344	c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal dom	2e-04
d2ca6a1	344	c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal dom	3e-04
d2ca6a1	344	c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal dom	0.002
d1h6ua2	227	c.10.2.1 (A:36-262) Internalin H {Listeria monocyt	4e-08
d1h6ua2	227	c.10.2.1 (A:36-262) Internalin H {Listeria monocyt	1e-06
d1h6ua2	227	c.10.2.1 (A:36-262) Internalin H {Listeria monocyt	4e-06
d1h6ua2	227	c.10.2.1 (A:36-262) Internalin H {Listeria monocyt	5e-06
d1h6ua2	227	c.10.2.1 (A:36-262) Internalin H {Listeria monocyt	1e-05
d1h6ua2	227	c.10.2.1 (A:36-262) Internalin H {Listeria monocyt	8e-05
d1w8aa_	192	c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanoga	1e-07
d1w8aa_	192	c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanoga	4e-04
d1w8aa_	192	c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanoga	0.004
d1xwdc1	242	c.10.2.7 (C:18-259) Follicle-stimulating hormone r	6e-07
d1xwdc1	242	c.10.2.7 (C:18-259) Follicle-stimulating hormone r	2e-06
d1xwdc1	242	c.10.2.7 (C:18-259) Follicle-stimulating hormone r	1e-05
d1xwdc1	242	c.10.2.7 (C:18-259) Follicle-stimulating hormone r	3e-05
d1xwdc1	242	c.10.2.7 (C:18-259) Follicle-stimulating hormone r	5e-05
d1xwdc1	242	c.10.2.7 (C:18-259) Follicle-stimulating hormone r	0.003
d1xwdc1	242	c.10.2.7 (C:18-259) Follicle-stimulating hormone r	0.004
d1h6ta2	210	c.10.2.1 (A:31-240) Internalin B {Listeria monocyt	8e-07
d1h6ta2	210	c.10.2.1 (A:31-240) Internalin B {Listeria monocyt	7e-05
d1h6ta2	210	c.10.2.1 (A:31-240) Internalin B {Listeria monocyt	0.003
d1h6ta2	210	c.10.2.1 (A:31-240) Internalin B {Listeria monocyt	0.004
d1koha1	162	c.10.2.3 (A:201-362) mRNA export factor tap {Human	3e-05
d1koha1	162	c.10.2.3 (A:201-362) mRNA export factor tap {Human	4e-05
d1koha1	162	c.10.2.3 (A:201-362) mRNA export factor tap {Human	0.001
d1a9na_	162	c.10.2.4 (A:) Splicesomal U2A' protein {Human (Hom	1e-04
d1a9na_	162	c.10.2.4 (A:) Splicesomal U2A' protein {Human (Hom	1e-04
d1a9na_	162	c.10.2.4 (A:) Splicesomal U2A' protein {Human (Hom	0.002
d1a9na_	162	c.10.2.4 (A:) Splicesomal U2A' protein {Human (Hom	0.003
d2omxa2	199	c.10.2.1 (A:37-235) Internalin B {Listeria monocyt	0.001
d1m9la_	198	c.10.3.1 (A:) Outer arm dynein light chain 1 {Gree	0.003

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score =  111 bits (277), Expect = 9e-27
 Identities = 72/385 (18%), Positives = 137/385 (35%), Gaps = 53/385 (13%)

Query: 400 SQLENLVELTLSYNLLQGPIPASLGNLKNLTKLNLPGNQLNGTLPETLGSLPELSVLDVS 459
           + L   ++  L    +   +  S  +L  +T L      +     + +  L  L+ ++ S
Sbjct: 19  TALAEKMKTVLGKTNVTDTV--SQTDLDQVTTLQADRLGIKSI--DGVEYLNNLTQINFS 74

Query: 460 SNSLTGIISEIHFSRLSKLKFLGLSSNSFILNVSSSWIPPFQVQSLNMRSCQLGPSFPSW 519
           +N LT I        L+KL  + +++N        + +      +L            + 
Sbjct: 75  NNQLTDITP---LKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITDIDPLKNL 131

Query: 520 LKTQQG------VSFLDFSNASISGPIPNWFWDISSKLSLLNVSLNQLQGQLPNP----- 568
               +       +S +   +   S    ++   ++    L N++  +      N      
Sbjct: 132 TNLNRLELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSDIS 191

Query: 569 --LNIAPFADVDFRSNLLEGPIPLPIVE-IELLDLSNNHFSGPIPQNISGSMPNLIFLSV 625
               +     +   +N +    PL I+  ++ L L+ N            S+ NL  L +
Sbjct: 192 VLAKLTNLESLIATNNQISDITPLGILTNLDELSLNGNQLKDIGT---LASLTNLTDLDL 248

Query: 626 SGNRLTGKIPGSIGEMQLLQVIDLSRNSISGSIS--------------------SSIGNC 665
           + N+++   P  +  +  L  + L  N IS                        S I N 
Sbjct: 249 ANNQISNLAP--LSGLTKLTELKLGANQISNISPLAGLTALTNLELNENQLEDISPISNL 306

Query: 666 TFLKVLDLSYSSLSGVIPASLGQLTRLQSLHLNNNKLTGNLPSSFQNLTSLETLDLGNNR 725
             L  L L ++++S + P  +  LT+LQ L   NNK++    SS  NLT++  L  G+N+
Sbjct: 307 KNLTYLTLYFNNISDISP--VSSLTKLQRLFFANNKVSD--VSSLANLTNINWLSAGHNQ 362

Query: 726 FSGNIPSLLGNGFVGLRILSLRSNA 750
            S   P  L N    +  L L   A
Sbjct: 363 ISDLTP--LAN-LTRITQLGLNDQA 384

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 88.1 bits (217), Expect = 5e-19
 Identities = 70/389 (17%), Positives = 132/389 (33%), Gaps = 51/389 (13%)

Query: 98  LEYLDLSFNTFNDIPIPEFLGSLENLQYLNLSEAGFTGVVPSSLGNLHRLQYFDVSAELF 157
           +  L         I   + +  L NL  +N S    T + P  L NL +L    ++    
Sbjct: 46  VTTLQADRLGIKSI---DGVEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQI 100

Query: 158 ALSADSLDWLTGLVSLKHLAMNRVDLSLVGSEWLGILKNLPNLTELHLSVCGLTGSITSI 217
           A      +                   L     L  L+   N                  
Sbjct: 101 ADITPLANLTNLTGLTLFNNQITDIDPLKNLTNLNRLELSSN------------------ 142

Query: 218 TPVNLTSPAVLDLSLNHFNSLFPNWLVNISTLVYVDLSDCDLYGRIPIGFGELPNLQYLS 277
           T  ++++ + L              L  ++ L  ++  D        I            
Sbjct: 143 TISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSDISVLAKLTNLESL 202

Query: 278 LAGNNNLSGSCSQLFRGSWKKIQILNFASNKLHGKLPSSVANMTSLTNFDLFDKKVEGGI 337
           +A NN +S             +  L+   N+L      ++A++T+LT+ DL + ++    
Sbjct: 203 IATNNQISDITPLGI---LTNLDELSLNGNQLKD--IGTLASLTNLTDLDLANNQISNLA 257

Query: 338 PSSIARLCYLKEFDLSGNNLTGSLPEILQGTDLCVSSNSPLPSLISMRLGNNHLKGKLPE 397
           P  ++ L  L E  L  N ++   P               L +L ++ L  N L+   P 
Sbjct: 258 P--LSGLTKLTELKLGANQISNISPLA------------GLTALTNLELNENQLEDISPI 303

Query: 398 WLSQLENLVELTLSYNLLQGPIPASLGNLKNLTKLNLPGNQLNGTLPETLGSLPELSVLD 457
               L+NL  LTL +N +    P  + +L  L +L    N+++     +L +L  ++ L 
Sbjct: 304 S--NLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFANNKVSD--VSSLANLTNINWLS 357

Query: 458 VSSNSLTGIISEIHFSRLSKLKFLGLSSN 486
              N ++ +      + L+++  LGL+  
Sbjct: 358 AGHNQISDLTP---LANLTRITQLGLNDQ 383

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 76.2 bits (186), Expect = 3e-15
 Identities = 50/222 (22%), Positives = 82/222 (36%), Gaps = 32/222 (14%)

Query: 687 GQLTRLQSLHLNNNKLTGNLPSSFQNLTSLETLDLGNNRFSGNIPSLLGNGFVGLRILSL 746
            +LT L+SL   NN+++   P      T+L+ L L  N+    I +L       L  L L
Sbjct: 194 AKLTNLESLIATNNQISDITPLGIL--TNLDELSLNGNQLKD-IGTL--ASLTNLTDLDL 248

Query: 747 RSNAFSGEIPSKLSNLSSLQVLDLAENNLTGSIPGSVGDLKAMAHVQNIVKYLLFGRYRG 806
            +N  S   P  LS L+ L  L L  N ++   P                   L G    
Sbjct: 249 ANNQISNLAP--LSGLTKLTELKLGANQISNISP-------------------LAGLTAL 287

Query: 807 IYYEENLVINTKGSSKDTPRLFHFIDLSGNNLHGDFPTQLTKLVGLVVLNLSRNHIGGQI 866
              E N       S     +   ++ L  NN+    P  ++ L  L  L  + N +    
Sbjct: 288 TNLELNENQLEDISPISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFANNKVSD-- 343

Query: 867 PENISGLHQLASLDLSSNNLSGGIPSSLSSLSFLGYINLSRN 908
             +++ L  +  L    N +S   P  L++L+ +  + L+  
Sbjct: 344 VSSLANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQ 383

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 68.9 bits (167), Expect = 9e-13
 Identities = 49/209 (23%), Positives = 78/209 (37%), Gaps = 30/209 (14%)

Query: 710 FQNLTSLETLDLGNNRFSGNIPSLLGNGFVGLRILSLRSNAFSGEIPSKLSNLSSLQVLD 769
              LT+LE+L   NN+ S   P         L  LSL  N         L++L++L  LD
Sbjct: 193 LAKLTNLESLIATNNQISDITPL---GILTNLDELSLNGNQLKD--IGTLASLTNLTDLD 247

Query: 770 LAENNLTGSIPGSVGDLKAMAHVQNIVKYLLFGRYRGIYYEENLVINTKGSSKDTPRLFH 829
           LA N ++   P     L  +  +  +   L   +   I     L   T     +      
Sbjct: 248 LANNQISNLAP-----LSGLTKLTEL--KLGANQISNISPLAGLTALTNLELNENQLEDI 300

Query: 830 FIDLSGNNLHGDFPTQLTKLVGLVVLNLSRNHIGGQIPENISGLHQLASLDLSSNNLSGG 889
                            + L  L  L L  N+I    P  +S L +L  L  ++N +S  
Sbjct: 301 SPI--------------SNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFANNKVSD- 343

Query: 890 IPSSLSSLSFLGYINLSRNQLSGKIPFEG 918
             SSL++L+ + +++   NQ+S   P   
Sbjct: 344 -VSSLANLTNINWLSAGHNQISDLTPLAN 371

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 66.2 bits (160), Expect = 7e-12
 Identities = 74/431 (17%), Positives = 137/431 (31%), Gaps = 66/431 (15%)

Query: 198 PNLTELHLSVCGLTGSITSITPVNLTSPAVLDLSLNHFNSLFPNWLVNISTLVYVDLSDC 257
             L E   +V G T    +++  +L     L        S+  + +  ++ L  ++ S+ 
Sbjct: 19  TALAEKMKTVLGKTNVTDTVSQTDLDQVTTLQADRLGIKSI--DGVEYLNNLTQINFSNN 76

Query: 258 DLYGRIPIGFGELPNLQYLSLAGNNNLSGSCSQLFRGSWKKIQILNFASNKLHGKLPSSV 317
            L    P     L  L  + +  N     +               N  ++    K  +++
Sbjct: 77  QLTDITP--LKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITDIDPLKNLTNL 134

Query: 318 ANMTSLTNFDLFDKKVEGGIPSSIARLCYLKEFDLSGNNLTGSLPEILQGTDLCVSSNSP 377
             +   +N       + G                    NLT                   
Sbjct: 135 NRLELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLT------------------- 175

Query: 378 LPSLISMRLGNNHLKGKLPEWLSQLENLVELTLSYNLLQGPIPASLGNLKNLTKLNLPGN 437
                  RL  +  K      L++L NL  L  + N +    P     L NL +L+L GN
Sbjct: 176 ----TLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITPLG--ILTNLDELSLNGN 229

Query: 438 QLNGTLPETLGSLPELSVLDVSSNSLTGIISEIHFSRLSKLKFLGLSSNSFILNVSSSWI 497
           QL      TL SL  L+ LD+++N ++ +      S L+KL  L L +N        + +
Sbjct: 230 QLKD--IGTLASLTNLTDLDLANNQISNLAP---LSGLTKLTELKLGANQISNISPLAGL 284

Query: 498 PPFQVQSLNMRSCQLGPSFPSWLKTQQGVSFLDFSNASISGPIPNWFWDISSKLSLLNVS 557
                  LN    +      S +   + +++L     +IS   P       +KL  L  +
Sbjct: 285 TALTNLELNENQLE----DISPISNLKNLTYLTLYFNNISDISPVSSL---TKLQRLFFA 337

Query: 558 LNQLQGQLPNPLNIAPFADVDFRSNLLEGPIPLPIVEIELLDLSNNHFSGPIPQNISGSM 617
            N++         ++  A+               +  I  L   +N  S   P     ++
Sbjct: 338 NNKVSD-------VSSLAN---------------LTNINWLSAGHNQISDLTP---LANL 372

Query: 618 PNLIFLSVSGN 628
             +  L ++  
Sbjct: 373 TRITQLGLNDQ 383

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 56.9 bits (136), Expect = 6e-09
 Identities = 49/251 (19%), Positives = 88/251 (35%), Gaps = 15/251 (5%)

Query: 671 LDLSYSSLSGVIPASLGQLTRLQSLHLNNNKLTGNLPSSFQNLTSLETLDLGNNRFSGNI 730
             L  ++++  +  S   L ++ +L  +   +        + L +L  ++  NN+ +   
Sbjct: 27  TVLGKTNVTDTV--SQTDLDQVTTLQADRLGIKS--IDGVEYLNNLTQINFSNNQLTDIT 82

Query: 731 PSLLGNGFVGLRIL-SLRSNAFSGEIPSKLSNLSSLQVLDLAENNLTGSIPGSVGDLKAM 789
           P         L  L  +  N       + L+NL++L  L L  N +T   P         
Sbjct: 83  P------LKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITDIDPLKNLTNLNR 136

Query: 790 AHVQNIVKYLLFGRYRGIYYEENLVINTKGSSKDTPRLFHFIDLSGNNLHGDFPTQLTKL 849
             + +     +         ++    N     K    L     L  ++      + L KL
Sbjct: 137 LELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSDISVLAKL 196

Query: 850 VGLVVLNLSRNHIGGQIPENISGLHQLASLDLSSNNLSGGIPSSLSSLSFLGYINLSRNQ 909
             L  L  + N I    P  I     L  L L+ N L      +L+SL+ L  ++L+ NQ
Sbjct: 197 TNLESLIATNNQISDITPLGIL--TNLDELSLNGNQLKD--IGTLASLTNLTDLDLANNQ 252

Query: 910 LSGKIPFEGHM 920
           +S   P  G  
Sbjct: 253 ISNLAPLSGLT 263

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 46.1 bits (108), Expect = 1e-05
 Identities = 30/149 (20%), Positives = 48/149 (32%), Gaps = 14/149 (9%)

Query: 31  NCSENDLDALIDFKNGLEDPESRLASWKGSNCCQWHGISCDDDTGAIVAINLGNPYHVVN 90
           + + N +  L           ++L   K       +       T         N    ++
Sbjct: 247 DLANNQISNLAPLSG-----LTKLTELKLGANQISNISPLAGLTALTNLELNENQLEDIS 301

Query: 91  SDSSGSLLEYLDLSFNTFNDIPIPEFLGSLENLQYLNLSEAGFTGVVPSSLGNLHRLQYF 150
             S+   L YL L FN  +DI     + SL  LQ L  +    +    SSL NL  + + 
Sbjct: 302 PISNLKNLTYLTLYFNNISDIS---PVSSLTKLQRLFFANNKVSD--VSSLANLTNINWL 356

Query: 151 DVSAELFALSADSLDWLTGLVSLKHLAMN 179
                  +     L  L  L  +  L +N
Sbjct: 357 SAGHNQIS----DLTPLANLTRITQLGLN 381

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 38.8 bits (89), Expect = 0.003
 Identities = 14/70 (20%), Positives = 28/70 (40%), Gaps = 4/70 (5%)

Query: 849 LVGLVVLNLSRNHIGGQIPENISGLHQLASLDLSSNNLSGGIPSSLSSLSFLGYINLSRN 908
           L   +   L + ++   + +  + L Q+ +L      +       +  L+ L  IN S N
Sbjct: 21  LAEKMKTVLGKTNVTDTVSQ--TDLDQVTTLQADRLGIKS--IDGVEYLNNLTQINFSNN 76

Query: 909 QLSGKIPFEG 918
           QL+   P + 
Sbjct: 77  QLTDITPLKN 86

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 97.1 bits (240), Expect = 2e-22
 Identities = 77/296 (26%), Positives = 117/296 (39%), Gaps = 20/296 (6%)

Query: 648 DLSRNSISGSISSSIGNCTFLKVLDLSYSSLSGV--IPASLGQLTRLQSLHL-NNNKLTG 704
           D    +  G +  +      +  LDLS  +L     IP+SL  L  L  L++   N L G
Sbjct: 32  DCCNRTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVG 91

Query: 705 NLPSSFQNLTSLETLDLGNNRFSGNIPSLLGNGFVGLRILSLRSNAFSGEIPSKLSNLSS 764
            +P +   LT L  L + +   SG IP    +    L  L    NA SG +P  +S+L +
Sbjct: 92  PIPPAIAKLTQLHYLYITHTNVSGAIPDF-LSQIKTLVTLDFSYNALSGTLPPSISSLPN 150

Query: 765 LQVLDLAENNLTGSIPGSVGDLKAMAHVQNIVKYLLFGRYRGIYYEENLVINTKGSSKDT 824
           L  +    N ++G+IP S G    +     I +  L G+    +                
Sbjct: 151 LVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANL------------- 197

Query: 825 PRLFHFIDLSGNNLHGDFPTQLTKLVGLVVLNLSRNHIGGQIPENISGLHQLASLDLSSN 884
                       N+     + L              +        +     L  LDL +N
Sbjct: 198 ---NLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNN 254

Query: 885 NLSGGIPSSLSSLSFLGYINLSRNQLSGKIPFEGHMTTFDASSFAGNPGLCGDPLP 940
            + G +P  L+ L FL  +N+S N L G+IP  G++  FD S++A N  LCG PLP
Sbjct: 255 RIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQGGNLQRFDVSAYANNKCLCGSPLP 310

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 93.7 bits (231), Expect = 2e-21
 Identities = 63/336 (18%), Positives = 114/336 (33%), Gaps = 35/336 (10%)

Query: 32  CSENDLDALIDFKNGLEDPESRLASWK-GSNCCQ--WHGISCDDDTGAIVAINLGNPYHV 88
           C+  D  AL+  K  L +P + L+SW   ++CC   W G+ CD DT           Y V
Sbjct: 3   CNPQDKQALLQIKKDLGNP-TTLSSWLPTTDCCNRTWLGVLCDTDTQ---------TYRV 52

Query: 89  VNSDSSGSLLEYLDLSFNTFN-DIPIPEFLGSLENLQYLNLSE-AGFTGVVPSSLGNLHR 146
            N          LDLS        PIP  L +L  L +L +       G +P ++  L +
Sbjct: 53  NN----------LDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQ 102

Query: 147 LQYFDVSAELFALSADSLDWLTGLVSLKHLAMNRVDLSLVGSEWLGILKNLPNLTELHLS 206
           L Y  ++    + +          +     + N +            + +LPNL  +   
Sbjct: 103 LHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALS-----GTLPPSISSLPNLVGITFD 157

Query: 207 VCGLTGSITSITPVNLTSPAVLDLSLNHFNSLFPNWLVNISTLVYVDLSDCDLYGRIPIG 266
              ++G+I      +  S + L  S+    +     +      + +   D          
Sbjct: 158 GNRISGAIPD----SYGSFSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSRNMLEGDA 213

Query: 267 FGELPNLQYLSLAGNNNLSGSCSQLFRGSWKKIQILNFASNKLHGKLPSSVANMTSLTNF 326
                + +          S +      G  K +  L+  +N+++G LP  +  +  L + 
Sbjct: 214 SVLFGSDKNTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSL 273

Query: 327 DLFDKKVEGGIPSSIARLCYLKEFDLSGNNLTGSLP 362
           ++    + G IP     L        + N      P
Sbjct: 274 NVSFNNLCGEIP-QGGNLQRFDVSAYANNKCLCGSP 308

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 75.9 bits (185), Expect = 3e-15
 Identities = 58/259 (22%), Positives = 105/259 (40%), Gaps = 13/259 (5%)

Query: 644 LQVIDLSRNSISG--SISSSIGNCTFLKVLDLSYS-SLSGVIPASLGQLTRLQSLHLNNN 700
           +  +DLS  ++     I SS+ N  +L  L +    +L G IP ++ +LT+L  L++ + 
Sbjct: 52  VNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHT 111

Query: 701 KLTGNLPSSFQNLTSLETLDLGNNRFSGNIPSLLGNGFVGLRILSLRSNAFSGEIPSKLS 760
            ++G +P     + +L TLD   N  SG +P  + +    L  ++   N  SG IP    
Sbjct: 112 NVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISS-LPNLVGITFDGNRISGAIPDSYG 170

Query: 761 NLSSLQVLDLAENN--------LTGSIPGSVGDLKAMAHVQNIVKYLLFGRYRGIYYEEN 812
           + S L        N           ++  +  DL       +        +     +   
Sbjct: 171 SFSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAK 230

Query: 813 LVINTKGSSKDTPRLFHFIDLSGNNLHGDFPTQLTKLVGLVVLNLSRNHIGGQIPENISG 872
             +          +  + +DL  N ++G  P  LT+L  L  LN+S N++ G+IP+    
Sbjct: 231 NSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQ-GGN 289

Query: 873 LHQLASLDLSSNNLSGGIP 891
           L +      ++N    G P
Sbjct: 290 LQRFDVSAYANNKCLCGSP 308

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 69.4 bits (168), Expect = 3e-13
 Identities = 55/300 (18%), Positives = 95/300 (31%), Gaps = 22/300 (7%)

Query: 164 LDWLTGLVSLKHLAMNRVDLSLVGSEWLGIL----KNLPNLTELHLSVCGLTGSITSITP 219
           L     L +   L+            WLG+L         +  L LS   L       + 
Sbjct: 12  LQIKKDLGNPTTLSSWLPTTDCCNRTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYPIPSS 71

Query: 220 V-NLTSPAVLDLSLNH-FNSLFPNWLVNISTLVYVDLSDCDLYGRIPIGFGELPNLQYLS 277
           + NL     L +   +      P  +  ++ L Y+ ++  ++ G IP    ++  L  L 
Sbjct: 72  LANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLD 131

Query: 278 LAGNNNLSGSCSQLFRGSWKKIQILNFASNKLHGKLPSSVANMTSLT------------- 324
            + N         +           +   N++ G +P S  + + L              
Sbjct: 132 FSYNALSGTLPPSISSLPNLVGITFD--GNRISGAIPDSYGSFSKLFTSMTISRNRLTGK 189

Query: 325 NFDLFDKKVEGGIPSSIARLCYLKEFDLSGNNLTGSLPEILQGTDLCVSSNSPLPSLISM 384
               F       +  S   L          +  T  +          +       +L  +
Sbjct: 190 IPPTFANLNLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGKVGLSKNLNGL 249

Query: 385 RLGNNHLKGKLPEWLSQLENLVELTLSYNLLQGPIPASLGNLKNLTKLNLPGNQLNGTLP 444
            L NN + G LP+ L+QL+ L  L +S+N L G IP   GNL+         N+     P
Sbjct: 250 DLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIP-QGGNLQRFDVSAYANNKCLCGSP 308

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 66.3 bits (160), Expect = 3e-12
 Identities = 53/255 (20%), Positives = 93/255 (36%), Gaps = 18/255 (7%)

Query: 249 LVYVDLSDCDLYGRIPI--GFGELPNLQYLSLAGNNNLSGSCSQLFRGSWKKIQILNFAS 306
           +  +DLS  +L    PI      LP L +L + G NNL             ++  L    
Sbjct: 52  VNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLV-GPIPPAIAKLTQLHYLYITH 110

Query: 307 NKLHGKLPSSVANMTSLTNFDLFDKKVEGGIPSSIARLCYLKEFDLSGNNLTGSLPEILQ 366
             + G +P  ++ + +L   D     + G +P SI+ L  L      GN ++G++P+   
Sbjct: 111 TNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYG 170

Query: 367 GTD-------------LCVSSNSPLPSLISMRLGNNHLKGKLPEWLSQLENLVELTLSYN 413
                                 +     ++    + ++       L   +   +      
Sbjct: 171 SFSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAK 230

Query: 414 LLQGPIPASLGNLKNLTKLNLPGNQLNGTLPETLGSLPELSVLDVSSNSLTGIISEIHFS 473
                    +G  KNL  L+L  N++ GTLP+ L  L  L  L+VS N+L G I +    
Sbjct: 231 NSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQ--GG 288

Query: 474 RLSKLKFLGLSSNSF 488
            L +      ++N  
Sbjct: 289 NLQRFDVSAYANNKC 303

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 63.6 bits (153), Expect = 3e-11
 Identities = 65/279 (23%), Positives = 114/279 (40%), Gaps = 14/279 (5%)

Query: 315 SSVANMTSLTNFDLFDKKVEGG--IPSSIARLCYLKEFDLSGNNLTGSLPEILQGTDLCV 372
            +      + N DL    +     IPSS+A L YL    + G N                
Sbjct: 44  DTDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGIN---------NLVGPIP 94

Query: 373 SSNSPLPSLISMRLGNNHLKGKLPEWLSQLENLVELTLSYNLLQGPIPASLGNLKNLTKL 432
            + + L  L  + + + ++ G +P++LSQ++ LV L  SYN L G +P S+ +L NL  +
Sbjct: 95  PAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGI 154

Query: 433 NLPGNQLNGTLPETLGSLPELSVLDVSSNSLTGIISEIHFSRLSKLKFLGLSSNSFILNV 492
              GN+++G +P++ GS  +L      S +   +  +I  +  +        S + +   
Sbjct: 155 TFDGNRISGAIPDSYGSFSKLFTSMTISRN--RLTGKIPPTFANLNLAFVDLSRNMLEGD 212

Query: 493 SSSWIPPFQVQSLNMRSCQLGPSFPSWLKTQQGVSFLDFSNASISGPIPNWFWDISSKLS 552
           +S      +       +          +   + ++ LD  N  I G +P     +   L 
Sbjct: 213 ASVLFGSDKNTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKF-LH 271

Query: 553 LLNVSLNQLQGQLPNPLNIAPFADVDFRSNLLEGPIPLP 591
            LNVS N L G++P   N+  F    + +N      PLP
Sbjct: 272 SLNVSFNNLCGEIPQGGNLQRFDVSAYANNKCLCGSPLP 310

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 60.9 bits (146), Expect = 2e-10
 Identities = 55/310 (17%), Positives = 90/310 (29%), Gaps = 49/310 (15%)

Query: 448 GSLPELSVLDVSSNSLTGIISEIH-FSRLSKLKFLGLSSNSFILNVSSSWIPPFQVQSLN 506
                ++ LD+S  +L          + L  L FL +   + +       IPP   +   
Sbjct: 47  TQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNL----VGPIPPAIAKLTQ 102

Query: 507 MRSCQLGPSFPSWLKTQQGVSFLDFSNASISGPIPNWFWDISSKLSLLNVSLNQLQGQLP 566
           +    +  +  S                         F      L  L+ S N L G LP
Sbjct: 103 LHYLYITHTNVSG--------------------AIPDFLSQIKTLVTLDFSYNALSGTLP 142

Query: 567 NPLNIAPFADVDFRSNLLEGPIPLPIVEIELLDLSNNHFSGPIPQNISGSMPNLIFLSVS 626
             ++  P                             N  SG IP +          +++S
Sbjct: 143 PSISSLPNLVGIT--------------------FDGNRISGAIPDSYGSFSKLFTSMTIS 182

Query: 627 GNRLTGKIPGSIGEMQLLQVIDLSRNSISGSISSSIGNCTFLKVLDLSYSSLSGVIPASL 686
            NRLTGKIP +   +           ++    +S +              +        +
Sbjct: 183 RNRLTGKIPPTFANLN--LAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGKV 240

Query: 687 GQLTRLQSLHLNNNKLTGNLPSSFQNLTSLETLDLGNNRFSGNIPSLLGNGFVGLRILSL 746
           G    L  L L NN++ G LP     L  L +L++  N   G IP           + + 
Sbjct: 241 GLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQG--GNLQRFDVSAY 298

Query: 747 RSNAFSGEIP 756
            +N      P
Sbjct: 299 ANNKCLCGSP 308

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 87.8 bits (216), Expect = 2e-19
 Identities = 66/318 (20%), Positives = 120/318 (37%), Gaps = 34/318 (10%)

Query: 199 NLTELHLSVCGLTGSITSITPVNLTSPAVLDLSLNHFNSLFPNWLVNISTLVYVDLSDCD 258
           +L  +  S  GL   +    P +     +LDL  N    +      N+  L  + L +  
Sbjct: 11  HLRVVQCSDLGLE-KVPKDLPPDTA---LLDLQNNKITEIKDGDFKNLKNLHTLILINNK 66

Query: 259 LYGRIPIGFGELPNLQYLSLAGNNNLSGSCSQLFRGSWKKIQILNFASNKLHGKLPSSVA 318
           +    P  F  L  L+ L L+ N        +L     K +Q L    N++     S   
Sbjct: 67  ISKISPGAFAPLVKLERLYLSKNQ-----LKELPEKMPKTLQELRVHENEITKVRKSVFN 121

Query: 319 NMTSLTNFDLFDKKVE--GGIPSSIARLCYLKEFDLSGNNLTGSLPEILQGTDLCVSSNS 376
            +  +   +L    ++  G    +   +  L    ++  N+T ++P+ L           
Sbjct: 122 GLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNIT-TIPQGL----------- 169

Query: 377 PLPSLISMRLGNNHLKGKLPEWLSQLENLVELTLSYNLLQGPIPASLGNLKNLTKLNLPG 436
             PSL  + L  N +       L  L NL +L LS+N +      SL N  +L +L+L  
Sbjct: 170 -PPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNN 228

Query: 437 NQLNGTLPETLGSLPELSVLDVSSNSLTGIISEI-----HFSRLSKLKFLGLSSNSFILN 491
           N+L    P  L     + V+ + +N+++ I S       + ++ +    + L SN     
Sbjct: 229 NKLVKV-PGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSN----P 283

Query: 492 VSSSWIPPFQVQSLNMRS 509
           V    I P   + + +R+
Sbjct: 284 VQYWEIQPSTFRCVYVRA 301

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 83.9 bits (206), Expect = 5e-18
 Identities = 51/292 (17%), Positives = 102/292 (34%), Gaps = 30/292 (10%)

Query: 626 SGNRLTGKIPGSIGEMQLLQVIDLSRNSISGSISSSIGNCTFLKVLDLSYSSLSGVIPAS 685
           S   L  K+P  +       ++DL  N I+        N   L  L L  + +S + P +
Sbjct: 18  SDLGLE-KVPKDLPPD--TALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGA 74

Query: 686 LGQLTRLQSLHLNNNKLTGNLPSSFQNLTSLETLDLGNNRFSGNIPSLLGNGFVGLRILS 745
              L +L+ L+L+ N+L        + L  L   +    +   ++ + L      +  L 
Sbjct: 75  FAPLVKLERLYLSKNQLKELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMI--VVELG 132

Query: 746 LRSNAFSGEIPSKLSNLSSLQVLDLAENNLTGSIPGSVGDLKAMAHVQNIVKYLLFGRYR 805
                 SG        +  L  + +A+ N+T +IP                   L     
Sbjct: 133 TNPLKSSGIENGAFQGMKKLSYIRIADTNIT-TIPQG-----------------LPPSLT 174

Query: 806 GIYYEENLVINTKGSSKDTPRLFHFIDLSGNNLHGDFPTQLTKLVGLVVLNLSRNHIGGQ 865
            ++ + N +     +S         + LS N++       L     L  L+L+ N +  +
Sbjct: 175 ELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKL-VK 233

Query: 866 IPENISGLHQLASLDLSSNNLSG------GIPSSLSSLSFLGYINLSRNQLS 911
           +P  ++    +  + L +NN+S         P   +  +    ++L  N + 
Sbjct: 234 VPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQ 285

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 79.3 bits (194), Expect = 2e-16
 Identities = 52/326 (15%), Positives = 106/326 (32%), Gaps = 60/326 (18%)

Query: 404 NLVELTLSYNLLQGPIPASLGNLKNLTKLNLPGNQLNGTLPETLGSLPELSVLDVSSNSL 463
           +   L L  N +         NLKNL  L L  N+++   P     L +L  L +S N L
Sbjct: 32  DTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQL 91

Query: 464 TGIISEIHFSRLSKLKFLGLSSNSFILNVSSSWIPPFQVQSLNMRSCQLGPSFPSWLKTQ 523
             +  ++  +     + L +  N       S +    Q+  + + +  L           
Sbjct: 92  KELPEKMPKTL----QELRVHENEITKVRKSVFNGLNQMIVVELGTNPL----------- 136

Query: 524 QGVSFLDFSNASISGPIPNWFWDISSKLSLLNVSLNQLQGQLPNPLNIAPFADVDFRSNL 583
                        SG     F  +   LS + ++   +                      
Sbjct: 137 -----------KSSGIENGAFQGMKK-LSYIRIADTNITTIPQGLPP------------- 171

Query: 584 LEGPIPLPIVEIELLDLSNNHFSGPIPQNISGSMPNLIFLSVSGNRLTGKIPGSIGEMQL 643
                      +  L L  N  +     ++ G + NL  L +S N ++    GS+     
Sbjct: 172 ----------SLTELHLDGNKITKVDAASLKG-LNNLAKLGLSFNSISAVDNGSLANTPH 220

Query: 644 LQVIDLSRNSISGSISSSIGNCTFLKVLDLSYSSLSGV------IPASLGQLTRLQSLHL 697
           L+ + L+ N +       + +  +++V+ L  +++S +       P    +      + L
Sbjct: 221 LRELHLNNNKLVKVP-GGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSL 279

Query: 698 NNNKLTGN--LPSSFQNLTSLETLDL 721
            +N +      PS+F+ +     + L
Sbjct: 280 FSNPVQYWEIQPSTFRCVYVRAAVQL 305

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 79.3 bits (194), Expect = 2e-16
 Identities = 57/307 (18%), Positives = 102/307 (33%), Gaps = 36/307 (11%)

Query: 609 IPQNISGSMPNLIFLSVSGNRLTGKIPGSIGEMQLLQVIDLSRNSISGSISSSIGNCTFL 668
           +P+++    P+   L +  N++T    G    ++ L  + L  N IS     +      L
Sbjct: 25  VPKDLP---PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKL 81

Query: 669 KVLDLSYSSLSGVIPASLGQLTRLQSLHLNNNKLTGNLPSSFQNLTSLETLDLGN--NRF 726
           + L LS + L  +          LQ L ++ N++T    S F  L  +  ++LG    + 
Sbjct: 82  ERLYLSKNQLKELPE---KMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKS 138

Query: 727 SGNIPSLLGNGFVGLRILSLRSNAFSGEIPSKLSNLSSLQVLDLAENNLTGSIPGSVGDL 786
           SG            L  + +     +  IP       SL  L L  N +T     S+  L
Sbjct: 139 SGIENGAFQG-MKKLSYIRIADTNIT-TIPQ--GLPPSLTELHLDGNKITKVDAASLKGL 194

Query: 787 KAMAHVQNIVKYLLFGRYRGIYYEENLVINTKGSSKDTPRLFHFIDLSGNNLHGDFPTQL 846
             +A +      +       +    +L                 + L+ N L    P  L
Sbjct: 195 NNLAKLGLSFNSISAVDNGSLANTPHL---------------RELHLNNNKLV-KVPGGL 238

Query: 847 TKLVGLVVLNLSRNHIGG------QIPENISGLHQLASLDLSSNNLSGG--IPSSLSSLS 898
                + V+ L  N+I          P   +     + + L SN +      PS+   + 
Sbjct: 239 ADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVY 298

Query: 899 FLGYINL 905
               + L
Sbjct: 299 VRAAVQL 305

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 65.8 bits (159), Expect = 5e-12
 Identities = 49/246 (19%), Positives = 86/246 (34%), Gaps = 9/246 (3%)

Query: 692 LQSLHLNNNKLTGNLPSSFQNLTSLETLDLGNNRFSGNIPSLLGNGFVGLRILSLRSNAF 751
           L+ +  ++  L   +P           LDL NN+ +        N    L  L L +N  
Sbjct: 12  LRVVQCSDLGLE-KVPKDL--PPDTALLDLQNNKITEIKDGDFKN-LKNLHTLILINNKI 67

Query: 752 SGEIPSKLSNLSSLQVLDLAENNLTGSIPGSVGDLKAMAHVQNIVKYLLFGRYRGIYYEE 811
           S   P   + L  L+ L L++N L          L+ +   +N +  +    + G+    
Sbjct: 68  SKISPGAFAPLVKLERLYLSKNQLKELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMI 127

Query: 812 NLVINTKGSSKDTPRLFHFIDLSGNNLHGDFPTQLTKLVG-----LVVLNLSRNHIGGQI 866
            + + T            F  +   +      T +T +       L  L+L  N I    
Sbjct: 128 VVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQGLPPSLTELHLDGNKITKVD 187

Query: 867 PENISGLHQLASLDLSSNNLSGGIPSSLSSLSFLGYINLSRNQLSGKIPFEGHMTTFDAS 926
             ++ GL+ LA L LS N++S     SL++   L  ++L+ N+L                
Sbjct: 188 AASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVKVPGGLADHKYIQVV 247

Query: 927 SFAGNP 932
               N 
Sbjct: 248 YLHNNN 253

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 65.8 bits (159), Expect = 5e-12
 Identities = 42/288 (14%), Positives = 89/288 (30%), Gaps = 24/288 (8%)

Query: 98  LEYLDLSFNTFNDIPIPEFLGSLENLQYLNLSEAGFTGVVPSSLGNLHRLQYFDVSAELF 157
              LDL  N   +I       +L+NL  L L     + + P +   L +L+   +S    
Sbjct: 33  TALLDLQNNKITEIK-DGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQL 91

Query: 158 ALSADSLDWLTGLVSLKHLAMNRVDLSLVGSEWLGILKNLPNLTELHLSVCGLTGS-ITS 216
               + +      + +    + +V           +   L  +  + L    L  S I +
Sbjct: 92  KELPEKMPKTLQELRVHENEITKV--------RKSVFNGLNQMIVVELGTNPLKSSGIEN 143

Query: 217 ITPVNLTSPAVLDLSLNHFNSLFPNWLVNISTLVYVDLSDCDLYGRIPIGFGELPNLQYL 276
                +   + + ++  +  ++      +++ L    L    +          L NL  L
Sbjct: 144 GAFQGMKKLSYIRIADTNITTIPQGLPPSLTEL---HLDGNKITKVDAASLKGLNNLAKL 200

Query: 277 SLAGNNNLSGSCSQLFRGSWKKIQILNFASNKLHGKLPSSVANMTSLTNFDLFDKKVEG- 335
               + N   +       +   ++ L+  +NKL    P  +A+   +    L +  +   
Sbjct: 201 G--LSFNSISAVDNGSLANTPHLRELHLNNNKLVKV-PGGLADHKYIQVVYLHNNNISAI 257

Query: 336 -----GIPSSIARLCYLKEFDLSGNNLTGSLPEILQGTDLCVSSNSPL 378
                  P    +        L  N +     EI   T  CV   + +
Sbjct: 258 GSNDFCPPGYNTKKASYSGVSLFSNPVQ--YWEIQPSTFRCVYVRAAV 303

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 45.4 bits (106), Expect = 2e-05
 Identities = 18/88 (20%), Positives = 29/88 (32%)

Query: 852 LVVLNLSRNHIGGQIPENISGLHQLASLDLSSNNLSGGIPSSLSSLSFLGYINLSRNQLS 911
             +L+L  N I      +   L  L +L L +N +S   P + + L  L  + LS+NQL 
Sbjct: 33  TALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLK 92

Query: 912 GKIPFEGHMTTFDASSFAGNPGLCGDPL 939
                                 +     
Sbjct: 93  ELPEKMPKTLQELRVHENEITKVRKSVF 120

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 75.2 bits (183), Expect = 3e-15
 Identities = 49/292 (16%), Positives = 96/292 (32%), Gaps = 19/292 (6%)

Query: 247 STLVYVDLSDCDLYGRIPIGFGELPNLQYLSLAGNNNLSGSCSQLFRGSWKKIQILNFAS 306
              V        L   +P+G       Q + L   N +S   +  FR       +   ++
Sbjct: 11  EPKVTTSCPQQGLQ-AVPVGIP--AASQRIFL-HGNRISHVPAASFRACRNLTILWLHSN 66

Query: 307 NKLHGKLPSSVANMTSLTNFDLFDKKVEGGIPSSIARLCYLKEFDLSGNNLTGSLPEILQ 366
                   +              + ++    P++   L  L    L              
Sbjct: 67  VLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRC----------G 116

Query: 367 GTDLCVSSNSPLPSLISMRLGNNHLKGKLPEWLSQLENLVELTLSYNLLQGPIPASLGNL 426
             +L       L +L  + L +N L+    +    L NL  L L  N +      +   L
Sbjct: 117 LQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGL 176

Query: 427 KNLTKLNLPGNQLNGTLPETLGSLPELSVLDVSSNSLTGIISEIHFSRLSKLKFLGLSSN 486
            +L +L L  N++    P     L  L  L + +N+L+ + +E      + L++L L+ N
Sbjct: 177 HSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRA-LQYLRLNDN 235

Query: 487 SFILNVSSSWIPPFQVQSLNMRSCQLGPSFPSWLKTQQGVSFLDFSNASISG 538
            ++ +  +  +  + +Q     S ++  S P  L    G      +   + G
Sbjct: 236 PWVCDCRARPLWAW-LQKFRGSSSEVPCSLPQRL---AGRDLKRLAANDLQG 283

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 74.5 bits (181), Expect = 5e-15
 Identities = 46/267 (17%), Positives = 86/267 (32%), Gaps = 12/267 (4%)

Query: 515 SFPSWLKTQQGVSFLDFSNASISGPIPNWFWDISSKLSLLNVSLNQLQGQLPNPLNIAPF 574
           + P  +        +      IS      F    +   L   S    +        +A  
Sbjct: 25  AVPVGIPA--ASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALL 82

Query: 575 ADVDFRSNLLEGPIPLPI----VEIELLDLSNNHFSGPIPQNISGSMPNLIFLSVSGNRL 630
             +D   N     +          +  L L        +   +   +  L +L +  N L
Sbjct: 83  EQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQ-ELGPGLFRGLAALQYLYLQDNAL 141

Query: 631 TGKIPGSIGEMQLLQVIDLSRNSISGSISSSIGNCTFLKVLDLSYSSLSGVIPASLGQLT 690
                 +  ++  L  + L  N IS     +      L  L L  + ++ V P +   L 
Sbjct: 142 QALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLG 201

Query: 691 RLQSLHLNNNKLTGNLPSSFQNLTSLETLDLGNNRFSGNIPSLLGNGFVGLRILSLRSNA 750
           RL +L+L  N L+     +   L +L+ L L +N +  +        +  L+     S+ 
Sbjct: 202 RLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCR--ARPLWAWLQKFRGSSSE 259

Query: 751 FSGEIPSKLSNLSSLQVLDLAENNLTG 777
               +P +L+      +  LA N+L G
Sbjct: 260 VPCSLPQRLAGRD---LKRLAANDLQG 283

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 67.9 bits (164), Expect = 7e-13
 Identities = 53/288 (18%), Positives = 84/288 (29%), Gaps = 20/288 (6%)

Query: 201 TELHLSVCGLTGSITSITPVNLTSPAVLDLSLNHFNSLFPNWLVNISTLVYVDLSDCDLY 260
                   GL  ++    P        + L  N  + +          L  + L    L 
Sbjct: 14  VTTSCPQQGLQ-AVPVGIPAASQ---RIFLHGNRISHVPAASFRACRNLTILWLHSNVLA 69

Query: 261 GRIPIGFGELPNLQYLSLAGNNNLSGSCSQLFRGSWKKIQILNFASNKLHGKLPSSVANM 320
                 F  L  L+ L L+ N  L       F     ++  L+     L    P     +
Sbjct: 70  RIDAAAFTGLALLEQLDLSDNAQLRSVDPATF-HGLGRLHTLHLDRCGLQELGPGLFRGL 128

Query: 321 TSLTNFDLFDKKVEGGIPSSIARLCYLKEFDLSGNNLTGSLPEILQGTDLCVSSNSPLPS 380
            +L    L D  ++     +   L  L    L GN ++       +G          L S
Sbjct: 129 AALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRG----------LHS 178

Query: 381 LISMRLGNNHLKGKLPEWLSQLENLVELTLSYNLLQGPIPASLGNLKNLTKLNLPGNQLN 440
           L  + L  N +    P     L  L+ L L  N L      +L  L+ L  L L  N   
Sbjct: 179 LDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWV 238

Query: 441 GTLPETLGSLPELSVLDVSSNSLTGIISEIHFSRLSKLKFLGLSSNSF 488
                       L     SS+ +   + +    RL+      L++N  
Sbjct: 239 CD-CRARPLWAWLQKFRGSSSEVPCSLPQ----RLAGRDLKRLAANDL 281

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 64.8 bits (156), Expect = 8e-12
 Identities = 58/276 (21%), Positives = 95/276 (34%), Gaps = 16/276 (5%)

Query: 646 VIDLSRNSISGSISSSIGNCTFLKVLDLSYSSLSGVIPASLGQLTRLQSLHLNNNKLTGN 705
                +  +  ++   I   +  + + L  + +S V  AS      L  L L++N L   
Sbjct: 15  TTSCPQQGLQ-AVPVGIPAAS--QRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARI 71

Query: 706 LPSSFQNLTSLETLDLGNNRFSGNIPSLLGNGFVGLRILSLRSNAFSGEIPSKLSNLSSL 765
             ++F  L  LE LDL +N    ++     +G   L  L L         P     L++L
Sbjct: 72  DAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAAL 131

Query: 766 QVLDLAENNLTGSIPGSVGDLKAMAHVQ---NIVKYLLFGRYRGI------YYEENLVIN 816
           Q L L +N L      +  DL  + H+    N +  +    +RG+         +N V +
Sbjct: 132 QYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAH 191

Query: 817 TKGSSKDTPRLFHFIDLSGNNLHGDFPTQLTKLVGLVVLNLSRNHIGGQIPENISGLHQL 876
               +         + L  NNL       L  L  L  L L+ N               L
Sbjct: 192 VHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVC-DCRARPLWAWL 250

Query: 877 ASLDLSSNNLSGGIPSSLSSLSFLGYINLSRNQLSG 912
                SS+ +   +P  L+         L+ N L G
Sbjct: 251 QKFRGSSSEVPCSLPQRLAGRDLK---RLAANDLQG 283

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 56.0 bits (133), Expect = 7e-09
 Identities = 49/270 (18%), Positives = 83/270 (30%), Gaps = 18/270 (6%)

Query: 669 KVLDLSYSSLSGVIPASLGQLTRLQSLHLNNNKLTGNLPSSFQNLTSLETLDLGNNRFSG 728
                    L   +P  +      Q + L+ N+++    +SF+   +L  L L +N  + 
Sbjct: 14  VTTSCPQQGLQ-AVPVGIP--AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLAR 70

Query: 729 NIPSLLGNGFVGLRILSLRSNAFSGEIPSKLSNLSSLQVLDLAENNLTGSIPGSVGDLKA 788
              +      +  ++    +       P+    L  L  L L    L    PG    L A
Sbjct: 71  IDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAA 130

Query: 789 MAHVQNIVKYLLFGRYRGIYYEENLVINTKGSSKDTPRLFHFIDLSGNNLHGDFPTQLTK 848
           + ++      L            NL                 + L GN +          
Sbjct: 131 LQYLYLQDNALQALPDDTFRDLGNL---------------THLFLHGNRISSVPERAFRG 175

Query: 849 LVGLVVLNLSRNHIGGQIPENISGLHQLASLDLSSNNLSGGIPSSLSSLSFLGYINLSRN 908
           L  L  L L +N +    P     L +L +L L +NNLS     +L+ L  L Y+ L+ N
Sbjct: 176 LHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDN 235

Query: 909 QLSGKIPFEGHMTTFDASSFAGNPGLCGDP 938
                               + +   C  P
Sbjct: 236 PWVCDCRARPLWAWLQKFRGSSSEVPCSLP 265

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 51.7 bits (122), Expect = 2e-07
 Identities = 45/251 (17%), Positives = 76/251 (30%), Gaps = 35/251 (13%)

Query: 96  SLLEYLDLSFNTFNDIPIPEFLGSLENLQYLNLSEAGF---------------------- 133
           +  + + L  N  + +P      +  NL  L L                           
Sbjct: 32  AASQRIFLHGNRISHVP-AASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDN 90

Query: 134 ---TGVVPSSLGNLHRLQYFDVSAELFALSADSLDWLTGLVSLKHLAMNRVDLSLVGSEW 190
                V P++   L RL    +           L      +   +L  N +      +  
Sbjct: 91  AQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQ-----ALP 145

Query: 191 LGILKNLPNLTELHLSVCGLTGSITSITPVNLTSPAVLDLSLNHFNSLFPNWLVNISTLV 250
               ++L NLT L L    ++          L S   L L  N    + P+   ++  L+
Sbjct: 146 DDTFRDLGNLTHLFLHGNRISSVPERAFR-GLHSLDRLLLHQNRVAHVHPHAFRDLGRLM 204

Query: 251 YVDLSDCDLYGRIPIGFGELPNLQYLSLAGNNNLSGSCSQLFRGSWKKIQILNFASNKLH 310
            + L   +L          L  LQYL L  +N     C    R  W  +Q    +S+++ 
Sbjct: 205 TLYLFANNLSALPTEALAPLRALQYLRLN-DNPWVCDCR--ARPLWAWLQKFRGSSSEVP 261

Query: 311 GKLPSSVANMT 321
             LP  +A   
Sbjct: 262 CSLPQRLAGRD 272

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 64.5 bits (155), Expect = 2e-11
 Identities = 57/341 (16%), Positives = 101/341 (29%), Gaps = 27/341 (7%)

Query: 427 KNLTKLNLPGNQLNGTLPETLGSLPELSVLDVSSNSLTGIISEIHFSRLSKLKFLGLSSN 486
           +   +L L    L+ +LPE     P L  L  S NSLT +           LK L + +N
Sbjct: 38  RQAHELELNNLGLS-SLPE---LPPHLESLVASCNSLTELPELP-----QSLKSLLVDNN 88

Query: 487 SFILNVSSSWIPPFQVQSLNMRSCQLGPSFPSWLKTQQGVSFLDFSNASISGPIPNWFWD 546
           +         +  +   S N           S+LK           N S+          
Sbjct: 89  NLKALSDLPPLLEYLGVSNNQLEKLPELQNSSFLKIID------VDNNSLKKLPDLPPSL 142

Query: 547 ISSKLSLLNVSLNQLQGQLPNPLNIAPFADVDFRSNLLEGPIPLPIVEIELLDLSNNHFS 606
                    +        LP    I    +   +   L   +   +    +L+      +
Sbjct: 143 EFIAAGNNQLEELPELQNLPFLTAIYADNNSLKKLPDLPLSLESIVAGNNILEELPELQN 202

Query: 607 GPIPQNISGSMPNLIFLSVSGNRLTGKIPGSIGEMQLLQVIDLSRNSISGSISSSIGNCT 666
            P    I     N +  ++     + +                   +      +     +
Sbjct: 203 LPFLTTI--YADNNLLKTLPDLPPSLEALNVRDNYLTDLPELPQSLTFLDVSENIFSGLS 260

Query: 667 FLKVLDLSYSSLSGVIPASLGQLTRLQSLHLNNNKLTGNLPSSFQNLTSLETLDLGNNRF 726
            L       ++ S  I +       L+ L+++NNKL   LP+       LE L    N  
Sbjct: 261 ELPPNLYYLNASSNEIRSLCDLPPSLEELNVSNNKLI-ELPAL---PPRLERLIASFNHL 316

Query: 727 SGNIPSLLGNGFVGLRILSLRSNAFSGEIPSKLSNLSSLQV 767
           +  +P L  N    L+ L +  N    E P    ++  L++
Sbjct: 317 A-EVPELPQN----LKQLHVEYNPLR-EFPDIPESVEDLRM 351

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 62.1 bits (149), Expect = 1e-10
 Identities = 49/325 (15%), Positives = 97/325 (29%), Gaps = 26/325 (8%)

Query: 404 NLVELTLSYNLLQGPIPASLGNLKNLTKLNLPGNQLNGTLPETLGSLPELSVLDVSSNSL 463
              EL L+   L   +P    +L     L    N L   LPE   SL  L V + +  +L
Sbjct: 39  QAHELELNNLGLSS-LPELPPHL---ESLVASCNSLT-ELPELPQSLKSLLVDNNNLKAL 93

Query: 464 TGIISEIHFSRLS-----------KLKFLGLSSNSFILNVSSSWIPPFQVQSLNMRSCQL 512
           + +   + +  +S              FL +             +PP         +   
Sbjct: 94  SDLPPLLEYLGVSNNQLEKLPELQNSSFLKIIDVDNNSLKKLPDLPPSLEFIAAGNNQLE 153

Query: 513 GPSFPSWLKTQQGVSFLDFSNASISGPIPNWFWDISSKLSLLNVSLNQLQGQLPNPLNIA 572
                  L     +   + S   +     +    ++    L  +   Q    L       
Sbjct: 154 ELPELQNLPFLTAIYADNNSLKKLPDLPLSLESIVAGNNILEELPELQNLPFLTTIYADN 213

Query: 573 PFADVDFRSNLLEGPIPLPIVE-IELLDLSNNHFSGPIPQNISGSMPNLIFLSVSGNRLT 631
                          + +      +L +L  +     + +NI   +  L       N  +
Sbjct: 214 NLLKTLPDLPPSLEALNVRDNYLTDLPELPQSLTFLDVSENIFSGLSELPPNLYYLNASS 273

Query: 632 GKIPGSIGEMQLLQVIDLSRNSISGSISSSIGNCTFLKVLDLSYSSLSGVIPASLGQLTR 691
            +I         L+ +++S N +   + +       L+ L  S++ L+  +P        
Sbjct: 274 NEIRSLCDLPPSLEELNVSNNKLI-ELPALPPR---LERLIASFNHLAE-VPELPQN--- 325

Query: 692 LQSLHLNNNKLTGNLPSSFQNLTSL 716
           L+ LH+  N L    P   +++  L
Sbjct: 326 LKQLHVEYNPLRE-FPDIPESVEDL 349

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 54.4 bits (129), Expect = 3e-08
 Identities = 52/353 (14%), Positives = 104/353 (29%), Gaps = 39/353 (11%)

Query: 347 LKEFDLSGNNLTGSLPEILQGTDLCVSSNSPLPSLISMRLGNNHLKGKLPEWLSQLENLV 406
             E +L+   L+ SLPE+              P L S+    N L  +LPE    L++L+
Sbjct: 40  AHELELNNLGLS-SLPELP-------------PHLESLVASCNSLT-ELPELPQSLKSLL 84

Query: 407 ELTLSYNLLQGPIPASLGNLKNLTKLNLPGNQLNGTLPETLGSLPELSVLDVSSNSLTGI 466
               +   L    P             L    ++    E L  L   S L +       +
Sbjct: 85  VDNNNLKALSDLPP------------LLEYLGVSNNQLEKLPELQNSSFLKIIDVDNNSL 132

Query: 467 ISEIHFSRLSKLKFLGLSSNSFILNVSSSWIPPFQVQSLNMRSCQLGPSFPSWLKTQQGV 526
                     +    G +    +  + +           N                    
Sbjct: 133 KKLPDLPPSLEFIAAGNNQLEELPELQNLPFLTAIYADNNSLKKLPDLPLSLESIVAGNN 192

Query: 527 SFLDFSNASISGPIPNWFWDISSKLSLLNVSLNQLQGQLPNPLNIAPFADVDFRSNLLEG 586
              +         +   + D +   +L ++  +     + +             + L   
Sbjct: 193 ILEELPELQNLPFLTTIYADNNLLKTLPDLPPSLEALNVRDNYLTDLPELPQSLTFLDVS 252

Query: 587 PIPLPIVEIELLDLSNNHFSGPIPQNISGSMPNLIFLSVSGNRLTGKIPGSIGEMQLLQV 646
                 +     +L   + S    +++    P+L  L+VS N+L  ++P        L+ 
Sbjct: 253 ENIFSGLSELPPNLYYLNASSNEIRSLCDLPPSLEELNVSNNKLI-ELPALPPR---LER 308

Query: 647 IDLSRNSISGSISSSIGNCTFLKVLDLSYSSLSGVIPASLGQLTRLQSLHLNN 699
           +  S N ++  +     N   LK L + Y+ L    P     +  L+   +N+
Sbjct: 309 LIASFNHLA-EVPELPQN---LKQLHVEYNPLRE-FPDIPESVEDLR---MNS 353

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 54.4 bits (129), Expect = 3e-08
 Identities = 26/94 (27%), Positives = 38/94 (40%), Gaps = 11/94 (11%)

Query: 696 HLNNNKLTGNLPSSFQNLTSLETLDLGNNRFSGNIPSLLGNGFVGLRILSLRSNAFSGEI 755
               N  +  + S      SLE L++ NN+    +P+L       L  L    N  + E+
Sbjct: 266 LYYLNASSNEIRSLCDLPPSLEELNVSNNKLI-ELPALPPR----LERLIASFNHLA-EV 319

Query: 756 PSKLSNLSSLQVLDLAENNLTG--SIPGSVGDLK 787
           P    N   L+ L +  N L     IP SV DL+
Sbjct: 320 PELPQN---LKQLHVEYNPLREFPDIPESVEDLR 350

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 50.6 bits (119), Expect = 5e-07
 Identities = 49/342 (14%), Positives = 96/342 (28%), Gaps = 35/342 (10%)

Query: 98  LEYLDLSFNTFNDIPIPEFLGSLENLQYLNLSEAGFTGVVPSSLGNLHRLQYFDVSAELF 157
              L+L+    + +P         +L+ L  S    T  +P    +L  L   + + +  
Sbjct: 40  AHELELNNLGLSSLP-----ELPPHLESLVASCNSLT-ELPELPQSLKSLLVDNNNLKAL 93

Query: 158 ALSADSLDWLTGLVSLKHLAMNRVDLSLVGSEWLGILKNLPNLTELHLSVCGLTGSITSI 217
           +     L++L    +         + S +    +    N        L       +  + 
Sbjct: 94  SDLPPLLEYLGVSNNQLEKLPELQNSSFLKIIDVD---NNSLKKLPDLPPSLEFIAAGNN 150

Query: 218 TPVNLTSPAVLDLSLNHFNSLFPNWLVNISTLVYVDLSDCDLYGRIPIGFGELPNLQYLS 277
               L     L      +        +    L    +   +           LP L  + 
Sbjct: 151 QLEELPELQNLPFLTAIYADNNSLKKLPDLPLSLESIVAGNNILEELPELQNLPFLTTIY 210

Query: 278 LAGNNNLSGSCSQLFRGSWKKIQILNFASNKLHGKLPSSVANMTSLTNFDLFDKKVEGGI 337
              N   +         +            +L   L     +    +        +    
Sbjct: 211 ADNNLLKTLPDLPPSLEALNVRDNYLTDLPELPQSLTFLDVSENIFSGLSELPPNLYYLN 270

Query: 338 PSS------IARLCYLKEFDLSGNNLTGSLPEILQGTDLCVSSNSPLPSLISMRLGNNHL 391
            SS            L+E ++S N L   LP +              P L  +    NHL
Sbjct: 271 ASSNEIRSLCDLPPSLEELNVSNNKLI-ELPAL-------------PPRLERLIASFNHL 316

Query: 392 KGKLPEWLSQLENLVELTLSYNLLQGPIPASLGNLKNLTKLN 433
             ++PE      NL +L + YN L+   P    ++++L ++N
Sbjct: 317 A-EVPELPQ---NLKQLHVEYNPLRE-FPDIPESVEDL-RMN 352

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 46.4 bits (108), Expect = 1e-05
 Identities = 17/85 (20%), Positives = 30/85 (35%), Gaps = 8/85 (9%)

Query: 828 FHFIDLSGNNLHGDFPTQLTKLVGLVVLNLSRNHIGGQIPENISGLHQLASLDLSSNNLS 887
                   N    +  +       L  LN+S N +  ++P       +L  L  S N+L+
Sbjct: 262 LPPNLYYLNASSNEIRSLCDLPPSLEELNVSNNKL-IELPALPP---RLERLIASFNHLA 317

Query: 888 GGIPSSLSSLSFLGYINLSRNQLSG 912
             +P    +L  L   ++  N L  
Sbjct: 318 -EVPELPQNLKQL---HVEYNPLRE 338

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 38.7 bits (88), Expect = 0.003
 Identities = 46/327 (14%), Positives = 92/327 (28%), Gaps = 22/327 (6%)

Query: 199 NLTELHLSVCGLTGSITSITPVNLTSPAVLDLSLNHFNSLFPNWLVNISTLVYVDLSDCD 258
              EL L+  GL+ S+  + P +L S   L  S N    L P    ++ +L+  + +   
Sbjct: 39  QAHELELNNLGLS-SLPELPP-HLES---LVASCNSLTEL-PELPQSLKSLLVDNNNLKA 92

Query: 259 LYGRIPIGFGELPNLQYLSLAGNNNLSGSCSQLFRGSWKKIQILNFASNKLHGKLPSSVA 318
           L    P+      +   L        S     +   +    ++ +   +       ++  
Sbjct: 93  LSDLPPLLEYLGVSNNQLEKLPELQNSSFLKIIDVDNNSLKKLPDLPPSLEFIAAGNNQL 152

Query: 319 NMTSLTNFDLFDKKVEGGIPSSIARLCYLKEFDLSGNNLTGSLPEILQGTDLCVSSNSPL 378
                     F   +     S           +                    +++    
Sbjct: 153 EELPELQNLPFLTAIYADNNSLKKLPDLPLSLESIVAGNNILEELPELQNLPFLTTIYAD 212

Query: 379 PSLISMRLGNNHLKGKLPEWLSQLENLVELTLSYNLLQGPIPASLGNLKNLTKLNLPGNQ 438
            +L+            L    + L +L EL                 L  L       N 
Sbjct: 213 NNLLKTLPDLPPSLEALNVRDNYLTDLPELP-QSLTFLDVSENIFSGLSELPPNLYYLNA 271

Query: 439 LNGTLPETLGSLPELSVLDVSSNSLTGIISEIHFSRLSKLKFLGLSSNSFILNVSSSWIP 498
            +  +       P L  L+VS+N L  + +        +L+ L  S N        + +P
Sbjct: 272 SSNEIRSLCDLPPSLEELNVSNNKLIELPALP-----PRLERLIASFNHL------AEVP 320

Query: 499 PF--QVQSLNMRSCQLG--PSFPSWLK 521
                ++ L++    L   P  P  ++
Sbjct: 321 ELPQNLKQLHVEYNPLREFPDIPESVE 347

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 61.3 bits (147), Expect = 1e-10
 Identities = 33/211 (15%), Positives = 73/211 (34%), Gaps = 6/211 (2%)

Query: 98  LEYLDLSFNTFNDIPIPEFLGSLENLQYLNLSEAGFTGVVPSSLGNLHRLQYFDVSAELF 157
           ++++DLS +      +   L     LQ L+L     +  + ++L     L   ++S    
Sbjct: 48  VQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSG 107

Query: 158 ALSADSLDWLTGLVSLKHLAMNRVDLSLVGSEWLGILKNLPNLTELHLSVCG---LTGSI 214
                    L+    L  L ++           + +      +T+L+LS          +
Sbjct: 108 FSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDL 167

Query: 215 TSITPVNLTSPAVLDLSLNHFNSLFPNWLVNISTLVYVDLSDC-DLYGRIPIGFGELPNL 273
           +++         +         +        ++ L ++ LS C D+     +  GE+P L
Sbjct: 168 STLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTL 227

Query: 274 QYLSLAGNNNLSGSCSQLFRGSWKKIQILNF 304
           + L + G   +     QL + +   +QI   
Sbjct: 228 KTLQVFG--IVPDGTLQLLKEALPHLQINCS 256

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 54.7 bits (130), Expect = 2e-08
 Identities = 23/86 (26%), Positives = 42/86 (48%), Gaps = 3/86 (3%)

Query: 831 IDLSGNNLHGDFPTQLTKLVGLVVLNLSRNHIGGQIPENISGLHQLASLDLSSNNLSG-G 889
           +DL+G NLH D   +L    G++     R+ +   + E+ S   ++  +DLS++ +    
Sbjct: 5   LDLTGKNLHPDVTGRLLSQ-GVIAFRCPRSFMDQPLAEHFS-PFRVQHMDLSNSVIEVST 62

Query: 890 IPSSLSSLSFLGYINLSRNQLSGKIP 915
           +   LS  S L  ++L   +LS  I 
Sbjct: 63  LHGILSQCSKLQNLSLEGLRLSDPIV 88

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 52.0 bits (123), Expect = 1e-07
 Identities = 46/282 (16%), Positives = 92/282 (32%), Gaps = 19/282 (6%)

Query: 408 LTLSYNLLQGPIPASLGNLKNLTKLNLPGNQLNGTLPETLGSLPELSVLDVSSNSLTGII 467
           L L+   L   +   L +   +     P + ++  L E   S   +  +D+S++ +    
Sbjct: 5   LDLTGKNLHPDVTGRLLSQ-GVIAFRCPRSFMDQPLAEHF-SPFRVQHMDLSNSVIEVST 62

Query: 468 SEIHFSRLSKLKFLGLSSNSFILNVSSSWIPPFQVQSLNMRSCQLGPSFPSWLKTQQGVS 527
                S+ SKL+ L L        + ++      +  LN+  C  G S  +        S
Sbjct: 63  LHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCS-GFSEFALQTLLSSCS 121

Query: 528 FLDFSNASISGPIPNWFWDISSKLSLLNVSLNQLQGQLPNPLNIAPFADVDFRSNLLEGP 587
            LD  N S           ++       ++   L G   N         V    N     
Sbjct: 122 RLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPN----- 176

Query: 588 IPLPIVEIELLDLSNNHFSGPIPQNISGSMPNLIFLSVSG-NRLTGKIPGSIGEMQLLQV 646
                  +  LDLS++             +  L  LS+S    +  +    +GE+  L+ 
Sbjct: 177 -------LVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKT 229

Query: 647 IDLSRNSISGSISSSIGNCTFLKVLDLSYSSLSGVIPASLGQ 688
           + +      G++         L++   + S  + +   ++G 
Sbjct: 230 LQVFGIVPDGTLQLLKEALPHLQI---NCSHFTTIARPTIGN 268

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 50.9 bits (120), Expect = 3e-07
 Identities = 44/291 (15%), Positives = 90/291 (30%), Gaps = 23/291 (7%)

Query: 430 TKLNLPGNQLNGTLPETLGSLPELSVLDVSSNSLTGIISEIHFSRLSKLKFLGLSSNSFI 489
             L+L G  L+  +   L S   +       + +   ++E       +++ + LS++   
Sbjct: 3   QTLDLTGKNLHPDVTGRLLSQ-GVIAFRCPRSFMDQPLAEH--FSPFRVQHMDLSNSVIE 59

Query: 490 LNVSSSWIPPF-QVQSLNMRSCQLGPSFPSWL-KTQQGVSFLDFSNASISGPIPNWFWDI 547
           ++     +    ++Q+L++   +L     + L K    V       +  S          
Sbjct: 60  VSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSS 119

Query: 548 SSKLSLLNVSLNQLQGQLPNPLNIAPFADVDFRSNLLEGPIPLPIVEIELLDLSNNHFSG 607
            S+L  LN+S      +    + +A  ++   + NL                   N    
Sbjct: 120 CSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLS--------------GYRKNLQKS 165

Query: 608 PIPQNISGSMPNLIFLSVSGNRLTGKIPGSIGEMQLLQVIDLSR-NSISGSISSSIGNCT 666
            +   +      +         L         ++  LQ + LSR   I       +G   
Sbjct: 166 DLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIP 225

Query: 667 FLKVLDLSYSSLSGVIPASLGQLTRLQSLHLNNNKLTGNLPSSFQNLTSLE 717
            LK L +      G +      L  LQ   +N +  T     +  N  + E
Sbjct: 226 TLKTLQVFGIVPDGTLQLLKEALPHLQ---INCSHFTTIARPTIGNKKNQE 273

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.6 bits (109), Expect = 7e-06
 Identities = 42/238 (17%), Positives = 87/238 (36%), Gaps = 11/238 (4%)

Query: 554 LNVSLNQLQGQLPNPLNIAPFADVDFRSNLLEGPIP--LPIVEIELLDLSNNHFSGPIPQ 611
           L+++   L   +   L            + ++ P+        ++ +DLSN+        
Sbjct: 5   LDLTGKNLHPDVTGRLLSQGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLH 64

Query: 612 NISGSMPNLIFLSVSGNRLTGKIPGSIGEMQLLQVIDLS--RNSISGSISSSIGNCTFLK 669
            I      L  LS+ G RL+  I  ++ +   L  ++LS        ++ + + +C+ L 
Sbjct: 65  GILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLD 124

Query: 670 VLDL------SYSSLSGVIPASLGQLTRLQSLHLNNNKLTGNLPSSFQNLTSLETLDLGN 723
            L+L      +   +   +      +T+L       N    +L +  +   +L  LDL +
Sbjct: 125 ELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSD 184

Query: 724 NRFSGNIPSLLGNGFVGLRILSL-RSNAFSGEIPSKLSNLSSLQVLDLAENNLTGSIP 780
           +    N           L+ LSL R      E   +L  + +L+ L +      G++ 
Sbjct: 185 SVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGIVPDGTLQ 242

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.5 bits (93), Expect = 6e-04
 Identities = 46/293 (15%), Positives = 85/293 (29%), Gaps = 32/293 (10%)

Query: 101 LDLSFNTFNDIPIPEFLGSL--ENLQYLNLSEAGFTGVVPSSLGNLHRLQYFDVSAELFA 158
           LDL+    +    P+  G L  + +       +     +        R+Q+ D+S     
Sbjct: 5   LDLTGKNLH----PDVTGRLLSQGVIAFRCPRSFMDQPLAEHFSPF-RVQHMDLSN--SV 57

Query: 159 LSADSLDW-LTGLVSLKHLAMNRVDLSLVGSEWLGILKNLPNLTELHLSVCGLTGSITSI 217
           +   +L   L+    L++L++  + LS      L       NL  L+LS C      +  
Sbjct: 58  IEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLA---KNSNLVRLNLSGC------SGF 108

Query: 218 TPVNLTSPAVLDLSLNHFNSLFPNWLVNISTLVYVDLSDCDLYGRIPIGFGELPNLQYLS 277
           +   L +       L+  N  +          V V                       LS
Sbjct: 109 SEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSET------------ITQLNLS 156

Query: 278 LAGNNNLSGSCSQLFRGSWKKIQILNFASNKLHGKLPSSVANMTSLTNFDLFD-KKVEGG 336
               N      S L R     + +    S  L          +  L +  L     +   
Sbjct: 157 GYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPE 216

Query: 337 IPSSIARLCYLKEFDLSGNNLTGSLPEILQGTDLCVSSNSPLPSLISMRLGNN 389
               +  +  LK   + G    G+L  + +       + S   ++    +GN 
Sbjct: 217 TLLELGEIPTLKTLQVFGIVPDGTLQLLKEALPHLQINCSHFTTIARPTIGNK 269

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.3 bits (90), Expect = 0.001
 Identities = 44/279 (15%), Positives = 95/279 (34%), Gaps = 21/279 (7%)

Query: 503 QSLNMRSCQLGPSFPSWLKTQQGVSFLDFSNASISGPIPNWFWDISSKLSLLNVSLNQLQ 562
           Q+L++    L P     L   QGV       + +  P+   F     ++  +++S + ++
Sbjct: 3   QTLDLTGKNLHPDVTGRL-LSQGVIAFRCPRSFMDQPLAEHF--SPFRVQHMDLSNSVIE 59

Query: 563 GQLPNPL--NIAPFADVDFRSNLLEGPIPLPIVE-IELLDLSNNHFSGPIPQNISGSMPN 619
               + +    +   ++      L  PI   + +   L+ L+ +  SG     +   + +
Sbjct: 60  VSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSS 119

Query: 620 LIFLSV---------SGNRLTGKIPGSIGEMQLLQVIDLSRNSISGSISSSIGNCTFLKV 670
              L           +   +   +      +  L +    +N     +S+ +  C  L  
Sbjct: 120 CSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVH 179

Query: 671 LDLSYSSL-SGVIPASLGQLTRLQSLHLNN-NKLTGNLPSSFQNLTSLETLDLGNNRFSG 728
           LDLS S +          QL  LQ L L+    +          + +L+TL +      G
Sbjct: 180 LDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGIVPDG 239

Query: 729 NIPSLLGNGFVGLRILSLRSNAFSGEIPSKLSNLSSLQV 767
            +  L       L  L +  + F+      + N  + ++
Sbjct: 240 TLQLLKEA----LPHLQINCSHFTTIARPTIGNKKNQEI 274

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 59.7 bits (143), Expect = 3e-10
 Identities = 36/231 (15%), Positives = 59/231 (25%), Gaps = 33/231 (14%)

Query: 661 SIGNCTFLKVLDLSYSSLSGVIPASLGQLTRLQSLHLNNNKLTGNLPSSFQNLTSLETLD 720
            +        ++    +L+  +P  L        LHL+ N L     ++    T L  L+
Sbjct: 5   EVSKVASHLEVNCDKRNLT-ALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLN 61

Query: 721 LGNNRFSGNIPSLLGNGFVGLRILSLRSNAFSGEIPSKLSNLSSLQVLDLAENNLTGSIP 780
           L     +                               L  L +L +      +L     
Sbjct: 62  LDRAELTKLQV------------------------DGTLPVLGTLDLSHNQLQSLPLLGQ 97

Query: 781 GSVGDLKAMAHVQNI-----VKYLLFGRYRGIYYEENLVINTKGSSKDTPRLFHFIDLSG 835
                         +           G  + +Y + N +                + L+ 
Sbjct: 98  TLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLAN 157

Query: 836 NNLHGDFPTQLTKLVGLVVLNLSRNHIGGQIPENISGLHQLASLDLSSNNL 886
           NNL       L  L  L  L L  N +   IP+   G H L    L  N  
Sbjct: 158 NNLTELPAGLLNGLENLDTLLLQENSL-YTIPKGFFGSHLLPFAFLHGNPW 207

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 56.3 bits (134), Expect = 4e-09
 Identities = 38/208 (18%), Positives = 64/208 (30%), Gaps = 11/208 (5%)

Query: 709 SFQNLTSLETLDLGNNRFSGNIPSLLGNGFVGLRILSLRSNAFSGEIPSKLSNLSSLQVL 768
               + S   ++      +  +P  L        IL L  N       + L   + L  L
Sbjct: 5   EVSKVASHLEVNCDKRNLT-ALPPDLPKD---TTILHLSENLLYTFSLATLMPYTRLTQL 60

Query: 769 DLAENNLTGSIPGSVGDLKAMAHVQNIVKYLLFGRYRGIYYEENLVINTKGSSKDTPRLF 828
           +L    LT         +     + +     L    + +     L ++    +       
Sbjct: 61  NLDRAELTKLQVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGAL 120

Query: 829 ------HFIDLSGNNLHGDFPTQLTKLVGLVVLNLSRNHIGGQIPENISGLHQLASLDLS 882
                   + L GN L    P  LT    L  L+L+ N++       ++GL  L +L L 
Sbjct: 121 RGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQ 180

Query: 883 SNNLSGGIPSSLSSLSFLGYINLSRNQL 910
            N+L   IP        L +  L  N  
Sbjct: 181 ENSLY-TIPKGFFGSHLLPFAFLHGNPW 207

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 53.2 bits (126), Expect = 5e-08
 Identities = 31/209 (14%), Positives = 57/209 (27%), Gaps = 6/209 (2%)

Query: 422 SLGNLKNLTKLNLPGNQLNGTLPETLGSLPELSVLDVSSNSLTGIISEIHFSRLSKLKFL 481
            +  + +  ++N     L   LP  L    + ++L +S N L            ++L  L
Sbjct: 5   EVSKVASHLEVNCDKRNLT-ALPPDLP--KDTTILHLSENLLYTFSLA-TLMPYTRLTQL 60

Query: 482 GLSSNSFILNVSSSWIPPFQVQSLNMRSCQLGPSFPSWLKTQQGVSFLDFSNASISGPIP 541
            L             +P      L+    Q  P     L     +        S+     
Sbjct: 61  NLDRAELTKLQVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGAL 120

Query: 542 NWFWDISSKLSLLNVSLNQLQGQLPNPLNIAPFADVDFRSNLLEGPIPLPIVEIELLDLS 601
               ++       N       G L     +   +  +     L   +   +  ++ L L 
Sbjct: 121 RGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQ 180

Query: 602 NNHFSGPIPQNISGSMPNLIFLSVSGNRL 630
            N     IP+        L F  + GN  
Sbjct: 181 ENSLY-TIPKGF-FGSHLLPFAFLHGNPW 207

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 48.9 bits (115), Expect = 1e-06
 Identities = 38/178 (21%), Positives = 61/178 (34%), Gaps = 12/178 (6%)

Query: 297 KKIQILNFASNKLHGKLPSSVANMTSLTNFDLFDKKVEGGIPSSIARLCYLKEFDLSGNN 356
           K   IL+ + N L+    +++   T LT  +L   ++          +    +   +   
Sbjct: 31  KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVDGTLPVLGTLDLSHNQLQ 90

Query: 357 LTGSLPEILQGTDLCVSSNSPLPSLISMRL-----------GNNHLKGKLPEWLSQLENL 405
               L + L    +   S + L SL    L             N LK   P  L+    L
Sbjct: 91  SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKL 150

Query: 406 VELTLSYNLLQGPIPASLGNLKNLTKLNLPGNQLNGTLPETLGSLPELSVLDVSSNSL 463
            +L+L+ N L       L  L+NL  L L  N L  T+P+       L    +  N  
Sbjct: 151 EKLSLANNNLTELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNPW 207

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 48.9 bits (115), Expect = 1e-06
 Identities = 43/253 (16%), Positives = 76/253 (30%), Gaps = 26/253 (10%)

Query: 92  DSSGSLLEYLDLSFNTFNDIP--IPEFLGSLENLQYLNLSEAGFTGVVPSSLGNLHRLQY 149
               S LE ++        +P  +P+      +   L+LSE        ++L    RL  
Sbjct: 7   SKVASHLE-VNCDKRNLTALPPDLPK------DTTILHLSENLLYTFSLATLMPYTRLTQ 59

Query: 150 FDVSAELFA--LSADSLDWLTGLVSLKHLAMNRVDLSLVGSEWLGILKNLPNLTEL---- 203
            ++            +L  L  L    +   +   L         +  +   LT L    
Sbjct: 60  LNLDRAELTKLQVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGA 119

Query: 204 ---------HLSVCGLTGSITSITPVNLTSPAVLDLSLNHFNSLFPNWLVNISTLVYVDL 254
                             ++             L L+ N+   L    L  +  L  + L
Sbjct: 120 LRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLL 179

Query: 255 SDCDLYGRIPIGFGELPNLQYLSLAGNNNLSGSCSQLFRGSWKKIQILNFASNKLHGKLP 314
            +  LY  IP GF     L +  L G N    +C  L+   W +    N    K    + 
Sbjct: 180 QENSLY-TIPKGFFGSHLLPFAFLHG-NPWLCNCEILYFRRWLQDNAENVYVWKQGVDVK 237

Query: 315 SSVANMTSLTNFD 327
           +  +N+ S+   +
Sbjct: 238 AMTSNVASVQCDN 250

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 48.6 bits (114), Expect = 2e-06
 Identities = 46/220 (20%), Positives = 68/220 (30%), Gaps = 19/220 (8%)

Query: 221 NLTSPAVLDLSLNHFNSLFPNWLVNISTLVYVDLSDCDLYGRIPIGFGELPNLQYLSLAG 280
            + S   ++    +  +L P+   + + L    LS+  LY            L  L+L  
Sbjct: 8   KVASHLEVNCDKRNLTALPPDLPKDTTIL---HLSENLLYTFSLATLMPYTRLTQLNLDR 64

Query: 281 NNNLSGSCSQLFRGSWKKIQILNFASNKLHGKLPSSVANMTSLTNFDLFDKKVEGGIPSS 340
                                 N         LP     + +LT  D+   ++      +
Sbjct: 65  AELTKLQVDGTLPVLGTLDLSHNQ-----LQSLPLLGQTLPALTVLDVSFNRLTSLPLGA 119

Query: 341 IARLCYLKEFDLSGNNLTGSLPEILQGTDLCVSSNSPLPSLISMRLGNNHLKGKLPEWLS 400
           +  L  L+E  L GN L    P +L  T               + L NN+L       L+
Sbjct: 120 LRGLGELQELYLKGNELKTLPPGLLTPTPKL----------EKLSLANNNLTELPAGLLN 169

Query: 401 QLENLVELTLSYNLLQGPIPASLGNLKNLTKLNLPGNQLN 440
            LENL  L L  N L   IP        L    L GN   
Sbjct: 170 GLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNPWL 208

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 48.6 bits (114), Expect = 2e-06
 Identities = 40/199 (20%), Positives = 66/199 (33%), Gaps = 27/199 (13%)

Query: 598 LDLSNNHFSGPIPQNISGSMPNLIFLSVSGNRLTGKIPGSIGEMQLLQVIDLSRNSISGS 657
           ++    + +  +P ++     +   L +S N L      ++     L  ++L R  ++  
Sbjct: 15  VNCDKRNLTA-LPPDLP---KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKL 70

Query: 658 I---------------------SSSIGNCTFLKVLDLSYSSLSGVIPASLGQLTRLQSLH 696
                                          L VLD+S++ L+ +   +L  L  LQ L+
Sbjct: 71  QVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELY 130

Query: 697 LNNNKLTGNLPSSFQNLTSLETLDLGNNRFSGNIPSLLGNGFVGLRILSLRSNAFSGEIP 756
           L  N+L    P        LE L L NN  +     LL      L  L L+ N+    IP
Sbjct: 131 LKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNG-LENLDTLLLQENSLY-TIP 188

Query: 757 SKLSNLSSLQVLDLAENNL 775
                   L    L  N  
Sbjct: 189 KGFFGSHLLPFAFLHGNPW 207

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.3 bits (103), Expect = 4e-05
 Identities = 39/249 (15%), Positives = 67/249 (26%), Gaps = 43/249 (17%)

Query: 195 KNLPNLTELHLSVCGLTGSITSITPVNLTSPAVLDLSLNHFNSLFPNWLVNISTLVYVDL 254
             + +  E++     LT ++    P + T   +L LS N   +     L+  + L  ++L
Sbjct: 7   SKVASHLEVNCDKRNLT-ALPPDLPKDTT---ILHLSENLLYTFSLATLMPYTRLTQLNL 62

Query: 255 SDCDLYGRIPIGFGELPNLQYLSLAGNNNLSGSCSQLFRG-------------------- 294
                        G LP L  L L+ N   S                             
Sbjct: 63  DRA--ELTKLQVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGAL 120

Query: 295 -SWKKIQILNFASNKLHGKLPSSVANMTSLTNFDLFDKKVEGGIPSSIARLCYLKEFDLS 353
               ++Q L    N+L    P  +     L    L +  +       +  L  L    L 
Sbjct: 121 RGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQ 180

Query: 354 GNNLTGSLPEILQGTDLCVSSNSPLPSLISMRLGNNHLK-----GKLPEWLSQLENLVEL 408
            N+L  ++P+                 L    L  N             WL      V +
Sbjct: 181 ENSLY-TIPKGF----------FGSHLLPFAFLHGNPWLCNCEILYFRRWLQDNAENVYV 229

Query: 409 TLSYNLLQG 417
                 ++ 
Sbjct: 230 WKQGVDVKA 238

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.5 bits (93), Expect = 6e-04
 Identities = 37/185 (20%), Positives = 68/185 (36%), Gaps = 8/185 (4%)

Query: 376 SPLPSLISMRLGNNHLKGKLPEWLSQLENLVELTLSYNLLQGPIPASLGNLKNLTKLNLP 435
           S + S + +     +L   LP  L +  +   L LS NLL     A+L     LT+LNL 
Sbjct: 7   SKVASHLEVNCDKRNLT-ALPPDLPK--DTTILHLSENLLYTFSLATLMPYTRLTQLNLD 63

Query: 436 GNQLNGTLPETLGSLPELSVLDVSSNSLTGIISEIHFSRLSKLKFLGLSSNSFILNVSSS 495
             +L     +   +LP L  LD+S N L  +           +  +  +  + +   +  
Sbjct: 64  RAELTKLQVDG--TLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALR 121

Query: 496 WIPPFQVQSLNMRSCQLGPSFPSWLKTQQGVSFLDFSNASISGPIPNWFWDISSKLSLLN 555
            +   Q     ++  +L    P  L     +  L  +N +++         + + L  L 
Sbjct: 122 GLGELQEL--YLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLEN-LDTLL 178

Query: 556 VSLNQ 560
           +  N 
Sbjct: 179 LQENS 183

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 58.8 bits (140), Expect = 2e-09
 Identities = 19/91 (20%), Positives = 38/91 (41%), Gaps = 9/91 (9%)

Query: 668 LKVLDLSYSSLSGV-IPASLGQLTRLQSLHLNNNKLTG----NLPSSFQNLTSLETLDLG 722
           ++ LD+    LS       L  L + Q + L++  LT     ++ S+ +   +L  L+L 
Sbjct: 4   IQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLR 63

Query: 723 NNRFSGNIPSLLGNGF----VGLRILSLRSN 749
           +N         +  G       ++ LSL++ 
Sbjct: 64  SNELGDVGVHCVLQGLQTPSCKIQKLSLQNC 94

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 52.7 bits (124), Expect = 1e-07
 Identities = 22/91 (24%), Positives = 35/91 (38%), Gaps = 12/91 (13%)

Query: 690 TRLQSLHLNNNKLTGN----LPSSFQNLTSLETLDLGNNRFSGNIPSLLGNGFV----GL 741
           + L+ L L +  ++ +    L ++     SL  LDL NN         L          L
Sbjct: 369 SVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGCLL 428

Query: 742 RILSLRSNAFSGEIPSKLSNLS----SLQVL 768
             L L    +S E+  +L  L     SL+V+
Sbjct: 429 EQLVLYDIYWSEEMEDRLQALEKDKPSLRVI 459

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 52.7 bits (124), Expect = 2e-07
 Identities = 12/92 (13%), Positives = 26/92 (28%), Gaps = 9/92 (9%)

Query: 593 VEIELLDLSNNHFSGPIPQNISGSMPNLIFLSVSGNRLTGKIPGSIGEM----QLLQVID 648
           ++I+ LD+     S      +   +     + +    LT      I         L  ++
Sbjct: 2   LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELN 61

Query: 649 LSRNSISGSISSSIG-----NCTFLKVLDLSY 675
           L  N +       +          ++ L L  
Sbjct: 62  LRSNELGDVGVHCVLQGLQTPSCKIQKLSLQN 93

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 51.5 bits (121), Expect = 3e-07
 Identities = 23/112 (20%), Positives = 41/112 (36%), Gaps = 26/112 (23%)

Query: 641 MQLLQVIDLSRNSISG----SISSSIGNCTFLKVLDLSYSSLSGVIPASLGQLTRLQSLH 696
             +L+V+ L+   +S     S+++++     L+ LDLS + L       L +  R     
Sbjct: 368 GSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVR----- 422

Query: 697 LNNNKLTGNLPSSFQNLTSLETLDLGNNRFSGNIPSLLGNGFVG---LRILS 745
                         Q    LE L L +  +S  +   L         LR++S
Sbjct: 423 --------------QPGCLLEQLVLYDIYWSEEMEDRLQALEKDKPSLRVIS 460

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 51.1 bits (120), Expect = 4e-07
 Identities = 14/76 (18%), Positives = 25/76 (32%), Gaps = 4/76 (5%)

Query: 715 SLETLDLGNNRFSGNIPSLLGNGFVGLRILSLRSNAFSGE----IPSKLSNLSSLQVLDL 770
            +++LD+     S    + L       +++ L     +      I S L    +L  L+L
Sbjct: 3   DIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNL 62

Query: 771 AENNLTGSIPGSVGDL 786
             N L       V   
Sbjct: 63  RSNELGDVGVHCVLQG 78

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 50.7 bits (119), Expect = 6e-07
 Identities = 19/92 (20%), Positives = 35/92 (38%), Gaps = 10/92 (10%)

Query: 619 NLIFLSVSGNRLTGK-IPGSIGEMQLLQVIDLSRNSISG----SISSSIGNCTFLKVLDL 673
           ++  L +    L+       +  +Q  QV+ L    ++      ISS++     L  L+L
Sbjct: 3   DIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNL 62

Query: 674 SYSSLSGVIPASLGQL-----TRLQSLHLNNN 700
             + L  V    + Q       ++Q L L N 
Sbjct: 63  RSNELGDVGVHCVLQGLQTPSCKIQKLSLQNC 94

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 49.6 bits (116), Expect = 1e-06
 Identities = 17/89 (19%), Positives = 29/89 (32%), Gaps = 8/89 (8%)

Query: 707 PSSFQNLTSLETLDLGNNRFSGNIPSLLGNGFVG---LRILSLRSNAFSGEIPSKLS--- 760
               Q  + L  L L +   S +  S L    +    LR L L +N        +L    
Sbjct: 362 QGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESV 421

Query: 761 --NLSSLQVLDLAENNLTGSIPGSVGDLK 787
                 L+ L L +   +  +   +  L+
Sbjct: 422 RQPGCLLEQLVLYDIYWSEEMEDRLQALE 450

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 48.8 bits (114), Expect = 2e-06
 Identities = 15/95 (15%), Positives = 25/95 (26%), Gaps = 5/95 (5%)

Query: 831 IDLSGNNL-HGDFPTQLTKLVGLVVLNLSRNHIGGQ----IPENISGLHQLASLDLSSNN 885
           +D+    L    +   L  L    V+ L    +       I   +     LA L+L SN 
Sbjct: 7   LDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNE 66

Query: 886 LSGGIPSSLSSLSFLGYINLSRNQLSGKIPFEGHM 920
           L       +          + +  L          
Sbjct: 67  LGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGC 101

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.9 bits (109), Expect = 9e-06
 Identities = 20/114 (17%), Positives = 36/114 (31%), Gaps = 24/114 (21%)

Query: 98  LEYLDLSFNTFNDIPIPEFLGSLENLQYLNLSEAGFTGVVPSSLGNLHRLQYFDVSAELF 157
           ++ LD+     +D    E L  L+  Q + L + G T      + +              
Sbjct: 4   IQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSA------------- 50

Query: 158 ALSADSLDWLTGLVSLKHLAMNRVDLSLVGSEWL--GILKNLPNLTELHLSVCG 209
                    L    +L  L +   +L  VG   +  G+      + +L L  C 
Sbjct: 51  ---------LRVNPALAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCC 95

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.9 bits (109), Expect = 1e-05
 Identities = 16/97 (16%), Positives = 30/97 (30%), Gaps = 15/97 (15%)

Query: 616 SMPNLIFLSVSGNRLTGKIPGSIGEM----QLLQVIDLSRNSISGSISSSIG-----NCT 666
               L  L ++   ++     S+         L+ +DLS N +  +    +         
Sbjct: 367 PGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGC 426

Query: 667 FLKVLDLSYSSLSGVIPASLGQLTRLQSLHLNNNKLT 703
            L+ L L     S  +         LQ+L  +   L 
Sbjct: 427 LLEQLVLYDIYWSEEMEDR------LQALEKDKPSLR 457

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.7 bits (106), Expect = 2e-05
 Identities = 21/94 (22%), Positives = 31/94 (32%), Gaps = 13/94 (13%)

Query: 376 SPLPSLISMRLGNNHLKGK----LPEWLSQLENLVELTLSYNLLQGPIPASLG-----NL 426
            P   L  + L +  +       L   L    +L EL LS N L       L        
Sbjct: 366 QPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPG 425

Query: 427 KNLTKLNLPGNQLNGTLPETLGSL----PELSVL 456
             L +L L     +  + + L +L    P L V+
Sbjct: 426 CLLEQLVLYDIYWSEEMEDRLQALEKDKPSLRVI 459

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.6 bits (103), Expect = 5e-05
 Identities = 16/73 (21%), Positives = 24/73 (32%), Gaps = 9/73 (12%)

Query: 852 LVVLNLSRNHIGGQ----IPENISGLHQLASLDLSSNNLSGGIPSSLSS-----LSFLGY 902
           L VL L+   +       +   +   H L  LDLS+N L       L          L  
Sbjct: 371 LRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGCLLEQ 430

Query: 903 INLSRNQLSGKIP 915
           + L     S ++ 
Sbjct: 431 LVLYDIYWSEEME 443

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.7 bits (98), Expect = 2e-04
 Identities = 14/78 (17%), Positives = 24/78 (30%), Gaps = 9/78 (11%)

Query: 829 HFIDLSGNNLHGD----FPTQLTKLVGLVVLNLSRNHIGGQIPENISGLHQ-----LASL 879
             + L+  ++           L     L  L+LS N +G      +    +     L  L
Sbjct: 372 RVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGCLLEQL 431

Query: 880 DLSSNNLSGGIPSSLSSL 897
            L     S  +   L +L
Sbjct: 432 VLYDIYWSEEMEDRLQAL 449

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.7 bits (98), Expect = 2e-04
 Identities = 27/176 (15%), Positives = 45/176 (25%), Gaps = 10/176 (5%)

Query: 380 SLISMRLGNNHLKGK-LPEWLSQLENLVELTLSYNLLQG----PIPASLGNLKNLTKLNL 434
            + S+ +    L      E L  L+    + L    L       I ++L     L +LNL
Sbjct: 3   DIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNL 62

Query: 435 PGNQLNGTLPETLGSL-----PELSVLDVSSNSLTGIISEIHFSRLSKLKFLGLSSNSFI 489
             N+L       +         ++  L + +  LTG    +  S L  L  L     S  
Sbjct: 63  RSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDN 122

Query: 490 LNVSSSWIPPFQVQSLNMRSCQLGPSFPSWLKTQQGVSFLDFSNASISGPIPNWFW 545
           L   +      +         +        L             A           
Sbjct: 123 LLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSN 178

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.8 bits (88), Expect = 0.003
 Identities = 18/95 (18%), Positives = 33/95 (34%), Gaps = 10/95 (10%)

Query: 171 VSLKHLAMNRVDLSLVGSEWLGILKNLPNLTELHLSVCGLTG-SITSITPV--NLTSPAV 227
           + ++ L +   +LS   + W  +L  L     + L  CGLT      I+       + A 
Sbjct: 2   LDIQSLDIQCEELS--DARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAE 59

Query: 228 LDLSLNHFN-----SLFPNWLVNISTLVYVDLSDC 257
           L+L  N         +          +  + L +C
Sbjct: 60  LNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNC 94

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.8 bits (88), Expect = 0.003
 Identities = 13/84 (15%), Positives = 24/84 (28%), Gaps = 9/84 (10%)

Query: 396 PEWLSQLENLVELTLSYNLLQG----PIPASLGNLKNLTKLNLPGNQLNGTLPETLGSLP 451
                    L  L L+   +       + A+L    +L +L+L  N L       L    
Sbjct: 362 QGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESV 421

Query: 452 E-----LSVLDVSSNSLTGIISEI 470
                 L  L +     +  + + 
Sbjct: 422 RQPGCLLEQLVLYDIYWSEEMEDR 445

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.4 bits (87), Expect = 0.004
 Identities = 22/148 (14%), Positives = 42/148 (28%), Gaps = 25/148 (16%)

Query: 60  SNCCQWHGISCDDDTGAIVAINLGNPYHVVNSDSSGSLLEYLDLSFNTFNDI---PIPEF 116
           S+    +    +         + G           GS+L  L L+    +D     +   
Sbjct: 333 SSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAAT 392

Query: 117 LGSLENLQYLNLSEAGFTGVVPSSLGNLHRLQYFDVSAELFALSADSLDWLTGLVSLKHL 176
           L +  +L+ L+LS           L    R                          L+ L
Sbjct: 393 LLANHSLRELDLSNNCLGDAGILQLVESVRQP---------------------GCLLEQL 431

Query: 177 AMNRVDLSLVGSEWL-GILKNLPNLTEL 203
            +  +  S    + L  + K+ P+L  +
Sbjct: 432 VLYDIYWSEEMEDRLQALEKDKPSLRVI 459

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 54.3 bits (130), Expect = 2e-09
 Identities = 28/122 (22%), Positives = 48/122 (39%), Gaps = 8/122 (6%)

Query: 669 KVLDLSYSSLSGVIPASLGQLTRLQSLHLNNNKLTGNLPSSFQNLTSLETLDLGNNRFSG 728
           +VL L++  L+  +   L QL  +  L L++N+L    P+    L +L  L++     + 
Sbjct: 1   RVLHLAHKDLT--VLCHLEQLLLVTHLDLSHNRLRALPPA----LAALRCLEVLQASDNA 54

Query: 729 NIPSLLGNGFVGLRILSLRSNAF-SGEIPSKLSNLSSLQVLDLAENNLTGSIPGSVGDLK 787
                       L+ L L +N          L +   L +L+L  N+L     G    L 
Sbjct: 55  LENVDGVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQ-EEGIQERLA 113

Query: 788 AM 789
            M
Sbjct: 114 EM 115

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 46.6 bits (110), Expect = 1e-06
 Identities = 27/107 (25%), Positives = 45/107 (42%), Gaps = 6/107 (5%)

Query: 623 LSVSGNRLTGKIPGSIGEMQLLQVIDLSRNSISGSISSSIGNCTFLKVLDLSYSSLSGVI 682
           L ++   LT  +   + ++ L+  +DLS N +     + +     L+VL  S ++L  V 
Sbjct: 3   LHLAHKDLT--VLCHLEQLLLVTHLDLSHNRLRALPPA-LAALRCLEVLQASDNALENVD 59

Query: 683 PASLGQLTRLQSLHLNNNKLTG-NLPSSFQNLTSLETLDLGNNRFSG 728
             +   L RLQ L L NN+L          +   L  L+L  N    
Sbjct: 60  GVA--NLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQ 104

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 44.7 bits (105), Expect = 4e-06
 Identities = 25/103 (24%), Positives = 36/103 (34%), Gaps = 5/103 (4%)

Query: 386 LGNNHLKGKLPEWLSQLENLVELTLSYNLLQGPIPASLGNLKNLTKLNLPGNQLNGTLPE 445
           L +  L       L QL  +  L LS+N L+   P +L  L+ L  L    N L      
Sbjct: 5   LAHKDLTV--LCHLEQLLLVTHLDLSHNRLRALPP-ALAALRCLEVLQASDNALENVDGV 61

Query: 446 TLGSLPELSVLDVSSNSLTGIISEIHFSRLSKLKFLGLSSNSF 488
                 +   L + +N L    +        +L  L L  NS 
Sbjct: 62  ANLPRLQ--ELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSL 102

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 40.9 bits (95), Expect = 1e-04
 Identities = 29/124 (23%), Positives = 42/124 (33%), Gaps = 17/124 (13%)

Query: 337 IPSSIARLCYLKEFDLSGNNLTGSLPEILQGTDLCVSSNSPLPSLISMRLGNNHLKGKLP 396
           +   + +L  +   DLS N L    P +     L V                +    +  
Sbjct: 12  VLCHLEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQA-------------SDNALENV 58

Query: 397 EWLSQLENLVELTLSYNLLQG-PIPASLGNLKNLTKLNLPGNQL---NGTLPETLGSLPE 452
           + ++ L  L EL L  N LQ       L +   L  LNL GN L    G        LP 
Sbjct: 59  DGVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPS 118

Query: 453 LSVL 456
           +S +
Sbjct: 119 VSSI 122

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 40.5 bits (94), Expect = 1e-04
 Identities = 29/137 (21%), Positives = 49/137 (35%), Gaps = 18/137 (13%)

Query: 348 KEFDLSGNNLTGSLPEILQGTDLCVSSNSPLPSLISMRLGNNHLKGKLPEWLSQLENLVE 407
           +   L+  +LT  L  +             L  +  + L +N L+   P  L+ L  L  
Sbjct: 1   RVLHLAHKDLT-VLCHL-----------EQLLLVTHLDLSHNRLRALPPA-LAALRCLE- 46

Query: 408 LTLSYNLLQGPIPASLGNLKNLTKLNLPGNQLNGT-LPETLGSLPELSVLDVSSNSLTGI 466
             L  +         + NL  L +L L  N+L  +   + L S P L +L++  NSL   
Sbjct: 47  -VLQASDNALENVDGVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQE 105

Query: 467 ISEIH--FSRLSKLKFL 481
                     L  +  +
Sbjct: 106 EGIQERLAEMLPSVSSI 122

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 40.1 bits (93), Expect = 2e-04
 Identities = 22/114 (19%), Positives = 37/114 (32%), Gaps = 26/114 (22%)

Query: 831 IDLSGNNLHGDFPTQLTKLVGLVVLNLSRNHIGGQIPENISGLHQLA------------- 877
           + L+  +L       L +L+ +  L+LS N +    P  ++ L  L              
Sbjct: 3   LHLAHKDLTV--LCHLEQLLLVTHLDLSHNRLRALPPA-LAALRCLEVLQASDNALENVD 59

Query: 878 ---------SLDLSSNNLSGG-IPSSLSSLSFLGYINLSRNQLSGKIPFEGHMT 921
                     L L +N L        L S   L  +NL  N L  +   +  + 
Sbjct: 60  GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLA 113

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 36.6 bits (84), Expect = 0.003
 Identities = 25/142 (17%), Positives = 38/142 (26%), Gaps = 24/142 (16%)

Query: 742 RILSLRSNAFSGEIPSKLSNLSSLQVLDLAENNLTGSIPGSVGDLKAMAHVQNIVKYLLF 801
           R+L L     +  +   L  L  +  LDL+ N L    P                   L 
Sbjct: 1   RVLHLAHKDLT--VLCHLEQLLLVTHLDLSHNRLRALPPA------------------LA 40

Query: 802 GRYRGIYYEENLVINTKGSSKDTPRLFHFIDLSGNNL-HGDFPTQLTKLVGLVVLNLSRN 860
                   + +                  + L  N L        L     LV+LNL  N
Sbjct: 41  ALRCLEVLQASDNALENVDGVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGN 100

Query: 861 HI---GGQIPENISGLHQLASL 879
            +    G        L  ++S+
Sbjct: 101 SLCQEEGIQERLAEMLPSVSSI 122

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Length = 344

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

 Score = 54.9 bits (130), Expect = 2e-08
 Identities = 33/316 (10%), Positives = 88/316 (27%), Gaps = 27/316 (8%)

Query: 418 PIPASLGNLKNLTKLNLPGNQLNG----TLPETLGSLPELSVLDVSSNSLTGIISEI--H 471
            + A L    ++ ++ L GN +       L E + S  +L + + S      +  EI   
Sbjct: 22  SVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEA 81

Query: 472 FSRLSKLKFLGLSSNSFILNVSSSWIPPFQVQSLNMRSCQLGPSFPSWLKTQQGVSFLDF 531
              L +        ++  L+ ++      +     +                   +    
Sbjct: 82  LRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKI 141

Query: 532 SNASISGPIPNWFWDISSKLSLLNVSLNQLQGQLPNPLNIAPFADVDFRSNLLEGPIPLP 591
           + A     +     +     S++            N L      +             + 
Sbjct: 142 ARALQELAVNKKAKNAPPLRSIICGR---------NRLENGSMKEWAKTFQSHRLLHTVK 192

Query: 592 IVEIELLDLSNNHFSGPIPQNISGSMPNLIFLSVSGNRLTGKIPGSIGEMQLLQVIDLSR 651
           +V+  +      H                +  +   +  +  +  ++     L+ + L+ 
Sbjct: 193 MVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLND 252

Query: 652 NSISGSISSSIGNC------TFLKVLDLSYSSLSGVIPASL-----GQLTRLQSLHLNNN 700
             +S   ++++ +         L+ L L Y+ +      +L      ++  L  L LN N
Sbjct: 253 CLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGN 312

Query: 701 KLTGNLPSSFQNLTSL 716
           +           +  +
Sbjct: 313 RF-SEEDDVVDEIREV 327

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Length = 344

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

 Score = 48.3 bits (113), Expect = 3e-06
 Identities = 43/310 (13%), Positives = 89/310 (28%), Gaps = 20/310 (6%)

Query: 619 NLIFLSVSGNRLTGKIPGSIGEMQLLQVIDLSRNSISG----SISSSIGNCTFLKVLDLS 674
           +L   +++       +   + E   ++ I LS N+I       +S +I +   L++ + S
Sbjct: 9   SLKLDAITTEDEK-SVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFS 67

Query: 675 YSSLSGVIPASLGQLTRLQSLHLNNNKLTGNLPSSFQNLTSLETLDLGNNRFSGNIPS-- 732
                 V       L  L    L   KL     S      + +   +        +    
Sbjct: 68  DIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLY 127

Query: 733 LLGNGFVGLRILSLRSNAFSGEIPSKLSNLSSLQVLDLAENNLTGSIPGSVGDLKAMAHV 792
           L  NG        +        +  K  N   L+ +    N L           K     
Sbjct: 128 LHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLE--NGSMKEWAKTFQSH 185

Query: 793 QNIVKYLLFGRYRGIYYEENLVINTKGSSKDTPRLFHFIDLSGNNLHGDFPTQLTKLVGL 852
           + +    +          E+L++      ++   L    +   +         L     L
Sbjct: 186 RLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNL 245

Query: 853 VVLNLSRNHIGGQIPENIS------GLHQLASLDLSSNNLSGGIPSSLSS-----LSFLG 901
             L L+   +  +    +           L +L L  N +      +L +     +  L 
Sbjct: 246 RELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLL 305

Query: 902 YINLSRNQLS 911
           ++ L+ N+ S
Sbjct: 306 FLELNGNRFS 315

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Length = 344

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

 Score = 42.2 bits (97), Expect = 2e-04
 Identities = 37/305 (12%), Positives = 77/305 (25%), Gaps = 16/305 (5%)

Query: 164 LDWLTGLVSLKHLAMNRVDLSLVGSEWLG-ILKNLPNLTELHLSVCGLTGSITSITPVNL 222
              L    S+K + ++   +    + WL   + +  +L     S          I     
Sbjct: 24  FAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALR 83

Query: 223 TSPAVLDLSLNHFNSLFPNWLVNISTLVYVDLSDCDLYGRIPIGFGELPNLQYLSLAGNN 282
                L            +     +    +            +                 
Sbjct: 84  LLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIAR 143

Query: 283 NLSGSCSQLFRGSWKKIQILNFASNKLHG---KLPSSVANMTSLTNFDLFDKKVEGGIPS 339
            L          +   ++ +    N+L     K  +       L +     +        
Sbjct: 144 ALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGI 203

Query: 340 SIARLCYLKEFDLSGNNLTGSLPEILQGTDLCVSSNSPLPSLISMRLGNNHLKGK----L 395
               L  L                   G+     +    P+L  + L +  L  +    +
Sbjct: 204 EHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAV 263

Query: 396 PEWLSQLEN--LVELTLSYNLLQGPIPASL-----GNLKNLTKLNLPGNQLNGTLPETLG 448
            +  S+LEN  L  L L YN ++     +L       + +L  L L GN+      + + 
Sbjct: 264 VDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRF-SEEDDVVD 322

Query: 449 SLPEL 453
            + E+
Sbjct: 323 EIREV 327

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Length = 344

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

 Score = 42.2 bits (97), Expect = 3e-04
 Identities = 32/308 (10%), Positives = 73/308 (23%), Gaps = 33/308 (10%)

Query: 380 SLISMRLGNNHLKGKLPEWLSQLENLVELTLSYNLLQGP----IPASLGNLKNLTKLNLP 435
           SL    +     K  +   L + +++ E+ LS N +       +  ++ + K+L      
Sbjct: 9   SLKLDAITTEDEK-SVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFS 67

Query: 436 GNQLNGTLPETLGSLPELSVLDVSSNSLTGIISEIHFSRLSKLKFLGLSSNSFILNVSSS 495
                    E   +L  L    +    L  +    +    +  + L    +         
Sbjct: 68  DIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLY 127

Query: 496 --WIPPFQVQSLNMRSCQLGPSFPSWLKTQQGVSFLDFSNASISGPIPNWFWDISSKLSL 553
                        +       +     K    +  +      +       +        L
Sbjct: 128 LHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRL 187

Query: 554 LNVSLNQLQGQLPNPLNIAPFADVDFRSNLL----------------EGPIPLPIVEIEL 597
           L+       G  P  +       + +   L                           +  
Sbjct: 188 LHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRE 247

Query: 598 LDLSNNHFSGPIPQNIS-----GSMPNLIFLSVSGNRLTGKIPGSIGE-----MQLLQVI 647
           L L++   S      +           L  L +  N +      ++       M  L  +
Sbjct: 248 LGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFL 307

Query: 648 DLSRNSIS 655
           +L+ N  S
Sbjct: 308 ELNGNRFS 315

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Length = 344

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

 Score = 39.1 bits (89), Expect = 0.002
 Identities = 35/312 (11%), Positives = 80/312 (25%), Gaps = 11/312 (3%)

Query: 337 IPSSIARLCYLKEFDLSGNNLTGSLPEILQGTDLCVSSNSPLPSLISMRLGNNHLKGKLP 396
           + + +     +KE  LSGN +       L        + +    L      +        
Sbjct: 23  VFAVLLEDDSVKEIVLSGNTIGTEAARWLS------ENIASKKDLEIAEFSDIFTGRVKD 76

Query: 397 EWLSQLENLVELTLSYNLLQGPIPASLGNLKNLTKLNLPGNQLNGTLPETLGSLPELSVL 456
           E    L  L++  L    L     +         +  +     +  L         L   
Sbjct: 77  EIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQ 136

Query: 457 DVSSNSLTGIISEIHFSRLSKLKFLGLSSNSFILNVSSSWIPPFQVQSLNMRSCQLGPSF 516
             +  +       ++    +      +      L   S        QS  +         
Sbjct: 137 AGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQN 196

Query: 517 PSWLKTQQGVSFLDFSNASISGPIPNWFWDISSKLSLLNVSLNQLQGQLPNPLNIAPFAD 576
               +  + +     +       +       +   S       +    L           
Sbjct: 197 GIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLS 256

Query: 577 VDFRSNLLEGPIPLPIVEIELLDLSNNHFSGP----IPQNISGSMPNLIFLSVSGNRLTG 632
               + +++    L  + ++ L L  N         +   I   MP+L+FL ++GNR   
Sbjct: 257 ARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRF-S 315

Query: 633 KIPGSIGEMQLL 644
           +    + E++ +
Sbjct: 316 EEDDVVDEIREV 327

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

 Score = 52.7 bits (125), Expect = 4e-08
 Identities = 36/226 (15%), Positives = 73/226 (32%), Gaps = 17/226 (7%)

Query: 425 NLKNLTKLNLPGNQLNGTLPETLGSLPELSVLDVSSNSLTGIISEIHFSRLSKLKFLGLS 484
            L N  K+    + +  T+  T   L  ++ L      +T I        L+ L  L L 
Sbjct: 17  ALANAIKIAAGKSNVTDTV--TQADLDGITTLSAFGTGVTTIEG---VQYLNNLIGLELK 71

Query: 485 SNSFILNVSSSWIPPFQVQSLNMRSCQLGPSFPSWLKTQQGVSFLDFSNASISGPIPNWF 544
            N                    +   +L  +    +    G+  +   + + +       
Sbjct: 72  DNQI-------TDLAPLKNLTKITELELSGNPLKNVSAIAGLQSIKTLDLTSTQITDVTP 124

Query: 545 WDISSKLSLLNVSLNQLQGQLPNPLNIAPFADVDFRSNLLEGPIPLPIVEIELLDLSNNH 604
               S L +L + LNQ+    P              + + +      + ++  L   +N 
Sbjct: 125 LAGLSNLQVLYLDLNQITNISPLAGLTNLQYLSIGNAQVSDLTPLANLSKLTTLKADDNK 184

Query: 605 FSGPIPQNISGSMPNLIFLSVSGNRLTGKIPGSIGEMQLLQVIDLS 650
            S   P     S+PNLI + +  N+++   P  +     L ++ L+
Sbjct: 185 ISDISPL---ASLPNLIEVHLKNNQISDVSP--LANTSNLFIVTLT 225

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

 Score = 48.5 bits (114), Expect = 1e-06
 Identities = 38/230 (16%), Positives = 70/230 (30%), Gaps = 13/230 (5%)

Query: 212 GSITSITPVNLTSP-----AVLDLSLNHFNSLFPNWLVNISTLVYVDLSDCDLYGRIPIG 266
           GSIT  T +N+  P       + ++    N        ++  +  +      +   I  G
Sbjct: 1   GSITQPTAINVIFPDPALANAIKIAAGKSNVTDTVTQADLDGITTLSAFGTGVTT-IE-G 58

Query: 267 FGELPNLQYLSLAGNNNLSGSCSQLFRGSWKKIQILNFASNKLHGKLPSSVANMTSLTNF 326
              L NL  L L  N     +  +      +     N   N        S+  +   +  
Sbjct: 59  VQYLNNLIGLELKDNQITDLAPLKNLTKITELELSGNPLKNVSAIAGLQSIKTLDLTSTQ 118

Query: 327 DLFDKKVEGGIPSSI--ARLCYLKEFDLSGNNLTGSLPEILQGTDLCVSSNSPLPSLISM 384
                 + G     +    L  +                I       ++  + L  L ++
Sbjct: 119 ITDVTPLAGLSNLQVLYLDLNQITNISPLAGLTNLQYLSIGNAQVSDLTPLANLSKLTTL 178

Query: 385 RLGNNHLKGKLPEWLSQLENLVELTLSYNLLQGPIPASLGNLKNLTKLNL 434
           +  +N +       L+ L NL+E+ L  N +    P  L N  NL  + L
Sbjct: 179 KADDNKISD--ISPLASLPNLIEVHLKNNQISDVSP--LANTSNLFIVTL 224

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

 Score = 46.9 bits (110), Expect = 4e-06
 Identities = 34/230 (14%), Positives = 71/230 (30%), Gaps = 20/230 (8%)

Query: 236 NSLFPNWLVNISTLVYVDLSDCDLYGRIPIGFGELPNLQYLSLAGNN--NLSGSCSQLFR 293
           N +FP+    ++  + +     ++   +     +L  +  LS  G     + G       
Sbjct: 10  NVIFPD--PALANAIKIAAGKSNVTDTVT--QADLDGITTLSAFGTGVTTIEGV------ 59

Query: 294 GSWKKIQILNFASNKLHGKLPSSVANMTSLTNFDLFDKKVEGGIPSSIARLCYLKEFDLS 353
                +  L    N++    P       +         K    I    +           
Sbjct: 60  QYLNNLIGLELKDNQITDLAPLKNLTKITELELSGNPLKNVSAIAGLQSIKTLDLTSTQI 119

Query: 354 GNNLTGSLPEILQGTDLCVSSNSPLPSLISMRLGNNHLKGKLP----EWLSQLENLVELT 409
            +    +    LQ   L ++  + +  L  +        G         L+ L  L  L 
Sbjct: 120 TDVTPLAGLSNLQVLYLDLNQITNISPLAGLTNLQYLSIGNAQVSDLTPLANLSKLTTLK 179

Query: 410 LSYNLLQGPIPASLGNLKNLTKLNLPGNQLNGTLPETLGSLPELSVLDVS 459
              N +    P  L +L NL +++L  NQ++   P  L +   L ++ ++
Sbjct: 180 ADDNKISDISP--LASLPNLIEVHLKNNQISDVSP--LANTSNLFIVTLT 225

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

 Score = 46.6 bits (109), Expect = 5e-06
 Identities = 40/239 (16%), Positives = 68/239 (28%), Gaps = 35/239 (14%)

Query: 671 LDLSYSSLSGVIPASLGQLTRLQSLHLNNNKLTGNLPSSFQNLTSLETLDLGNNRFSGNI 730
           +    S+++  +  +   L  + +L      +T       Q L +L  L+L +N+ +   
Sbjct: 24  IAAGKSNVTDTV--TQADLDGITTLSAFGTGVTT--IEGVQYLNNLIGLELKDNQITDLA 79

Query: 731 PSLLGNGFVGLRILSLRSNAFSGEIPSKLSNLSSLQVLDLAENNLTGSIPGSVGDLKAMA 790
           P                 N           N            ++      S        
Sbjct: 80  P---------------LKNLTKITELELSGNPLKNVSAIAGLQSIKTLDLTSTQITDVTP 124

Query: 791 HVQNIVKYLLFGRYRGIYYEENLVINTKGSSKDTPRLFHFIDLSGNNLHGDFPTQLTKLV 850
                   +L+     I     L               +   LS  N      T L  L 
Sbjct: 125 LAGLSNLQVLYLDLNQITNISPLAGL-----------TNLQYLSIGNAQVSDLTPLANLS 173

Query: 851 GLVVLNLSRNHIGGQIPENISGLHQLASLDLSSNNLSGGIPSSLSSLSFLGYINLSRNQ 909
            L  L    N I    P  ++ L  L  + L +N +S   P  L++ S L  + L+ NQ
Sbjct: 174 KLTTLKADDNKISDISP--LASLPNLIEVHLKNNQISDVSP--LANTSNLFIVTLT-NQ 227

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

 Score = 45.4 bits (106), Expect = 1e-05
 Identities = 18/67 (26%), Positives = 31/67 (46%), Gaps = 4/67 (5%)

Query: 657 SISSSIGNCTFLKVLDLSYSSLSGVIPASLGQLTRLQSLHLNNNKLTGNLPSSFQNLTSL 716
           S  + + N + L  L    + +S + P  L  L  L  +HL NN+++   P    N ++L
Sbjct: 164 SDLTPLANLSKLTTLKADDNKISDISP--LASLPNLIEVHLKNNQISDVSP--LANTSNL 219

Query: 717 ETLDLGN 723
             + L N
Sbjct: 220 FIVTLTN 226

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

 Score = 43.1 bits (100), Expect = 8e-05
 Identities = 34/232 (14%), Positives = 71/232 (30%), Gaps = 34/232 (14%)

Query: 688 QLTRLQSLHLNNNKLTGNLPSSFQNLTSLETLDLGNNRFSGNIPSLLGNGFVGLRILSLR 747
            L     +    + +T     +  +L  + TL          + ++              
Sbjct: 17  ALANAIKIAAGKSNVTD--TVTQADLDGITTLSAFGT----GVTTI-------------- 56

Query: 748 SNAFSGEIPSKLSNLSSLQVLDLAENNL-TGSIPGSVGDLKAMAHVQNIVKYLLFGRYRG 806
                      +  L++L  L+L +N +   +   ++  +  +    N +K +       
Sbjct: 57  ---------EGVQYLNNLIGLELKDNQITDLAPLKNLTKITELELSGNPLKNVSAIAGLQ 107

Query: 807 IYYEENLVINTKGSSKDTPRLFHFIDLSGNNLHGDFPTQLTKLVGLVVLNLSRNHIGGQI 866
                +L             L +   L  +       + L  L    +  LS  +     
Sbjct: 108 SIKTLDLTSTQITDVTPLAGLSNLQVLYLDLNQITNISPLAGLT--NLQYLSIGNAQVSD 165

Query: 867 PENISGLHQLASLDLSSNNLSGGIPSSLSSLSFLGYINLSRNQLSGKIPFEG 918
              ++ L +L +L    N +S   P  L+SL  L  ++L  NQ+S   P   
Sbjct: 166 LTPLANLSKLTTLKADDNKISDISP--LASLPNLIEVHLKNNQISDVSPLAN 215

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 192

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 51.0 bits (120), Expect = 1e-07
 Identities = 47/203 (23%), Positives = 86/203 (42%), Gaps = 30/203 (14%)

Query: 582 NLLEGPIPLPIVEIELLDLSNNHFSGPIPQNISGSMPNLIFLSVSGNRLTGKIPGSIGEM 641
            L E P  +P +    L L++N         + G +P+                      
Sbjct: 19  GLKEIPRDIP-LHTTELLLNDNELGRISSDGLFGRLPH---------------------- 55

Query: 642 QLLQVIDLSRNSISGSISSSIGNCTFLKVLDLSYSSLSGVIPASLGQLTRLQSLHLNNNK 701
             L  ++L RN ++G   ++    + ++ L L  + +  +       L +L++L+L +N+
Sbjct: 56  --LVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQ 113

Query: 702 LTGNLPSSFQNLTSLETLDLGNNRFSGNIPSLLGNGFVGLRILSLRSNAFSGEIPSKLSN 761
           ++  +P SF++L SL +L+L +N F+ N    L      LR  SL   A     PSK+ +
Sbjct: 114 ISCVMPGSFEHLNSLTSLNLASNPFNCNCH--LAWFAEWLRKKSLNGGAARCGAPSKVRD 171

Query: 762 LSSLQVLDLAENNLTGSIPGSVG 784
              +Q+ DL  +    S   S G
Sbjct: 172 ---VQIKDLPHSEFKCSSENSEG 191

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 192

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 40.2 bits (92), Expect = 4e-04
 Identities = 32/176 (18%), Positives = 63/176 (35%), Gaps = 4/176 (2%)

Query: 430 TKLNLPGNQLNGTLPETLGSLPELSVLDVSSNSLTGIISEIHFSRLSKLKFLGLSSNSFI 489
           T ++  G  L   +P  +      + L ++ N L  I S+  F RL  L  L L  N   
Sbjct: 11  TTVDCTGRGLK-EIPRDIP--LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLT 67

Query: 490 LNVSSSWIPPFQVQSLNMRSCQLGPSFPSWLKTQQGVSFLDFSNASISGPIPNWFWDISS 549
               +++     +Q L +   ++             +  L+  +  IS  +P  F  ++S
Sbjct: 68  GIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNS 127

Query: 550 KLSLLNVSLNQLQGQLPNPLNIAPFADVDFRSNLLEGPIPLPIVEIELLDLSNNHF 605
            L+ LN++ N                             P  + ++++ DL ++ F
Sbjct: 128 -LTSLNLASNPFNCNCHLAWFAEWLRKKSLNGGAARCGAPSKVRDVQIKDLPHSEF 182

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 192

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 37.1 bits (84), Expect = 0.004
 Identities = 31/204 (15%), Positives = 55/204 (26%), Gaps = 23/204 (11%)

Query: 669 KVLDLSYSSLSGVIPASLGQLTRLQSLHLNNNKLTGNLPSSFQNLTSLETLDLGNNRFSG 728
             +D +   L   IP  +        L LN+N+L                          
Sbjct: 11  TTVDCTGRGLK-EIPRDIP--LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLT 67

Query: 729 NIPSLLGNGFVGLRILSLRSNAFSGEIPSKLSNLSSLQVLDLAENNLTGSIPGSVGDLKA 788
            I      G   ++ L L  N            L  L+ L+L +N ++  +PGS   L +
Sbjct: 68  GIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNS 127

Query: 789 MAHVQNIVKYLLFGRYRGIYYEENLVINTKGSSKDTPRLFHFIDLSGNNLHGDFPTQLTK 848
           +                      +   N                L+G       P+++  
Sbjct: 128 LTS----------------LNLASNPFNCNCHLAWFAEWLRKKSLNGGAARCGAPSKVR- 170

Query: 849 LVGLVVLNLSRNHIGGQIPENISG 872
              + + +L  +       EN  G
Sbjct: 171 --DVQIKDLPHSEFKCS-SENSEG 191

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 242

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 49.5 bits (116), Expect = 6e-07
 Identities = 34/255 (13%), Positives = 62/255 (24%), Gaps = 22/255 (8%)

Query: 199 NLTELHLSVCGLTGSITSITPVNLTSPAVLDLSLNHFNSLFPNWLVNISTLVYVDLSDCD 258
           +          +T  I S  P N      L   L     +          L  +++S  D
Sbjct: 9   SNRVFLCQESKVT-EIPSDLPRNAIE---LRFVLTKLRVIQKGAFSGFGDLEKIEISQND 64

Query: 259 LYGRIPIGFGELPNLQYLSLAGNNNLSGSCSQLFRGSWKKIQILNFASNKLHGKLPSSVA 318
           +   I           +       N     +     +   +Q L  ++  +         
Sbjct: 65  VLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKI 124

Query: 319 NMTSLTNFDLFDKKVEGGIPSSIARLCYLKEFDLSGNNLTGSLPEILQGTDLCVSSNSPL 378
           +       D+ D      I  +       +   L  N             ++   + +  
Sbjct: 125 HSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKN--------GIQEIHNCAFNGT 176

Query: 379 PSLISMRLGNNHLKGKLPEWLSQLENLVELTLSYNLLQGPIPASLGNLKNLTKLNLPGNQ 438
                    NN+L+    +        V L +S   +       L NLK L   +     
Sbjct: 177 QLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYGLENLKKLRARSTYN-- 234

Query: 439 LNGTLPETLGSLPEL 453
                   L  LP L
Sbjct: 235 --------LKKLPTL 241

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 242

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 48.0 bits (112), Expect = 2e-06
 Identities = 34/246 (13%), Positives = 64/246 (26%), Gaps = 16/246 (6%)

Query: 665 CT-FLKVLDLSYSSLSGVIPASLGQLTRLQSLHLNNNKLTGNLPSSFQNLTSLETLDLGN 723
           C    +V     S ++  IP+ L        L     KL      +F     LE +++  
Sbjct: 6   CHCSNRVFLCQESKVT-EIPSDL--PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQ 62

Query: 724 NRFSGNIPSLLGNGFVGLRILSLRSNAFSGEIPSKLSNLSSLQVLDLAENNLTGSIPGSV 783
           N     I + + +                     K +NL  +             +  S 
Sbjct: 63  NDVLEVIEADVFSNL----------PKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISN 112

Query: 784 GDLKAMAHVQNIVKYLLFGRYRGIYYEENLVINTKGSSKDTPRLFHFIDLSGNNLHGDFP 843
             +K +  V  I           I    N+    + S          + L+ N +     
Sbjct: 113 TGIKHLPDVHKIHSL--QKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHN 170

Query: 844 TQLTKLVGLVVLNLSRNHIGGQIPENISGLHQLASLDLSSNNLSGGIPSSLSSLSFLGYI 903
                     +     N++     +   G      LD+S   +       L +L  L   
Sbjct: 171 CAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYGLENLKKLRAR 230

Query: 904 NLSRNQ 909
           +    +
Sbjct: 231 STYNLK 236

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 242

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.3 bits (105), Expect = 1e-05
 Identities = 8/70 (11%), Positives = 22/70 (31%), Gaps = 3/70 (4%)

Query: 664 NCTFLKVLDLSYSSLSGVIPASLGQLTRLQSLHLNNNKLTGNLPSSFQNLTSLETLDLGN 723
                ++     ++L  +        +    L ++  ++        +NL  L      N
Sbjct: 175 GTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYGLENLKKLRARSTYN 234

Query: 724 NRFSGNIPSL 733
            +    +P+L
Sbjct: 235 LK---KLPTL 241

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 242

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.5 bits (103), Expect = 3e-05
 Identities = 10/51 (19%), Positives = 21/51 (41%), Gaps = 3/51 (5%)

Query: 658 ISSSIGNCTFLKVLDLSYSSLSGVIPASLGQLTRLQSLHLNNNKLTGNLPS 708
            +      +   +LD+S + +  +    L  L +L++    N K    LP+
Sbjct: 193 PNDVFHGASGPVILDISRTRIHSLPSYGLENLKKLRARSTYNLK---KLPT 240

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 242

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.7 bits (101), Expect = 5e-05
 Identities = 30/235 (12%), Positives = 68/235 (28%), Gaps = 21/235 (8%)

Query: 419 IPASLGNLKNLTKLNLPGNQLNGTLPETLGSLPELSVLDVSSNSLTGIISEIHFSRLSKL 478
           IP+ L   +N  +L     +L            +L  +++S N +  +I    FS L KL
Sbjct: 23  IPSDL--PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKL 80

Query: 479 KFLGLSSNSFILNVSSSWIPPFQVQSLNMRSCQLGPSFPSWLKTQQGVSFLDFSNASISG 538
             + +   + +L ++             + S       P   K       L     +I+ 
Sbjct: 81  HEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINI 140

Query: 539 PIPNWFWDISSKLSLLNVSLNQLQGQLPNPLNIAPFADVDFRSNLLEGPIPLPIVEIELL 598
                   +      + + LN+   Q  +          +   +                
Sbjct: 141 HTIERNSFVGLSFESVILWLNKNGIQEIHNCAFNGTQLDELNLS---------------- 184

Query: 599 DLSNNHFSGPIPQNISGSMPNLIFLSVSGNRLTGKIPGSIGEMQLLQVIDLSRNS 653
              +N+    +P ++       + L +S  R+       +  ++ L+        
Sbjct: 185 ---DNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYGLENLKKLRARSTYNLK 236

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 242

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.0 bits (86), Expect = 0.003
 Identities = 7/45 (15%), Positives = 15/45 (33%), Gaps = 1/45 (2%)

Query: 445 ETLGSLPELSVLDVSSNSLTGIISEIHFSRLSKLKFLGLSSNSFI 489
           +         +LD+S   +  + S      L KL+     +   +
Sbjct: 195 DVFHGASGPVILDISRTRIHSLPSYG-LENLKKLRARSTYNLKKL 238

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 242

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.6 bits (85), Expect = 0.004
 Identities = 26/247 (10%), Positives = 53/247 (21%), Gaps = 22/247 (8%)

Query: 428 NLTKLNLPGNQLNGTLPETLGSLPELSVLDVSSNSLTGIISEIHFSRLSKLKFLGLSSNS 487
           +        +++   +P  L        L      L  I     FS    L+ + +S N 
Sbjct: 9   SNRVFLCQESKVT-EIPSDL--PRNAIELRFVLTKLRVIQKGA-FSGFGDLEKIEISQND 64

Query: 488 FILNVSSSWIPPFQVQSLNMRSCQLGPSFPSWLKTQQGVSFLDFSNASISGPIPNWFWDI 547
            +  + +                     + +    Q   +      ++           I
Sbjct: 65  VLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKI 124

Query: 548 SSKLSLLNVSLNQLQGQLPNPLNIAPFADVDFRSNLLEGPIPLPIVEIELLDLSNNHFSG 607
            S   +L    + +        +    +       L                  N +   
Sbjct: 125 HSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWL------------------NKNGIQ 166

Query: 608 PIPQNISGSMPNLIFLSVSGNRLTGKIPGSIGEMQLLQVIDLSRNSISGSISSSIGNCTF 667
            I                  N L               ++D+SR  I    S  + N   
Sbjct: 167 EIHNCAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYGLENLKK 226

Query: 668 LKVLDLS 674
           L+     
Sbjct: 227 LRARSTY 233

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]} Length = 210

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

 Score = 48.9 bits (115), Expect = 8e-07
 Identities = 41/214 (19%), Positives = 68/214 (31%), Gaps = 34/214 (15%)

Query: 671 LDLSYSSLSGVIPASLGQLTRLQSLHLNNNKLTGNLPSSFQNLTSLETLDLGNNRFSGNI 730
            +L   S++  +  +  +L  +  +  NN+ +        Q L ++  L L  N+ +   
Sbjct: 29  DNLKKKSVTDAV--TQNELNSIDQIIANNSDIKSVQG--IQYLPNVTKLFLNGNKLTDIK 84

Query: 731 PSLLGNGFVGLRILSLRSNAFSGEIPSKLSNLSSLQVLDLAENNLTGSIPGSVGDLKAMA 790
           P                           L+NL +L  L L EN +               
Sbjct: 85  P---------------------------LANLKNLGWLFLDENKVKDLSSLKDLKKLKSL 117

Query: 791 HVQNIVKYLLFG-RYRGIYYEENLVINTKGSSKDTPRLFHFIDLSGNNLHGDFPTQLTKL 849
            +++     + G  +        L  N         RL     LS  +        L  L
Sbjct: 118 SLEHNGISDINGLVHLPQLESLYLGNNKITDITVLSRLTKLDTLSLEDNQISDIVPLAGL 177

Query: 850 VGLVVLNLSRNHIGGQIPENISGLHQLASLDLSS 883
             L  L LS+NHI       ++GL  L  L+L S
Sbjct: 178 TKLQNLYLSKNHISD--LRALAGLKNLDVLELFS 209

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]} Length = 210

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

 Score = 42.7 bits (99), Expect = 7e-05
 Identities = 36/220 (16%), Positives = 66/220 (30%), Gaps = 34/220 (15%)

Query: 688 QLTRLQSLHLNNNKLTGNLPSSFQNLTSLETLDLGNNRFSGNIPSLLGNGFVGLRILSLR 747
                   +L    +T  +  +   L S++ +   N+                       
Sbjct: 22  AFAETIKDNLKKKSVTDAVTQN--ELNSIDQIIANNSDIKSVQG---------------- 63

Query: 748 SNAFSGEIPSKLSNLSSLQVLDLAENNLTGSIPGSVGDLKAMAHVQNIVKYLLFGRYRGI 807
                      +  L ++  L L  N LT   P  + +LK +  +      +        
Sbjct: 64  -----------IQYLPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDENKVKDLSSLKD 110

Query: 808 YYEENLVINTKGSSKDTPRLFHFIDLSGNNLHGDFPTQLTKLVGLVVLNLSRNHIGG-QI 866
             +   +        D   L H   L    L  +  T +T L  L  L+           
Sbjct: 111 LKKLKSLSLEHNGISDINGLVHLPQLESLYLGNNKITDITVLSRLTKLDTLSLEDNQISD 170

Query: 867 PENISGLHQLASLDLSSNNLSGGIPSSLSSLSFLGYINLS 906
              ++GL +L +L LS N++S     +L+ L  L  + L 
Sbjct: 171 IVPLAGLTKLQNLYLSKNHISD--LRALAGLKNLDVLELF 208

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]} Length = 210

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

 Score = 38.1 bits (87), Expect = 0.003
 Identities = 26/205 (12%), Positives = 53/205 (25%), Gaps = 19/205 (9%)

Query: 425 NLKNLTKLNLPGNQLNGTLPETLGSLPELSVLDVSSNSLTGIISEIHFSRLSKLKFLGLS 484
                 K NL    +   +  T   L  +  +  +++ +  +        L  +  L L+
Sbjct: 22  AFAETIKDNLKKKSVTDAV--TQNELNSIDQIIANNSDIKSVQG---IQYLPNVTKLFLN 76

Query: 485 SNSFILNVSSSWIPPFQVQ--SLNMRSCQLGPSFPSWLKTQQGVSFLDFSNASISGPIPN 542
            N        + +          N             LK+             +      
Sbjct: 77  GNKLTDIKPLANLKNLGWLFLDENKVKDLSSLKDLKKLKSLSLEHNGISDINGLVHLPQL 136

Query: 543 WFWDISSKLSLLNVSLNQLQGQLPNPLNIAPFADVDFRSNLLEGPIPLPIVEIELLDLSN 602
               + +        L++L       L     +D+   + L          +++ L LS 
Sbjct: 137 ESLYLGNNKITDITVLSRLTKLDTLSLEDNQISDIVPLAGL---------TKLQNLYLSK 187

Query: 603 NHFSGPIPQNISGSMPNLIFLSVSG 627
           NH S          + NL  L +  
Sbjct: 188 NHISDLRA---LAGLKNLDVLELFS 209

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]} Length = 210

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

 Score = 37.7 bits (86), Expect = 0.004
 Identities = 26/177 (14%), Positives = 56/177 (31%), Gaps = 11/177 (6%)

Query: 314 PSSVANMTSLTNFDLFDKKVEGGIPSSIARLCYLKEFDLSGNNLTG-----SLPEILQGT 368
             +   + S+      +  ++      I  L  + +  L+GN LT      +L  +    
Sbjct: 39  AVTQNELNSIDQIIANNSDIKSVQG--IQYLPNVTKLFLNGNKLTDIKPLANLKNLGWLF 96

Query: 369 DLCVSSNSPLPSLISMRLGNNHLKGKLPEWLSQLENLVELTLSYNLLQGPIPASLGNLKN 428
                           +L +  L+      ++ L +L +L   Y         ++ +   
Sbjct: 97  LDENKVKDLSSLKDLKKLKSLSLEHNGISDINGLVHLPQLESLYLGNNKITDITVLSRLT 156

Query: 429 LTKLNLPGNQLNGTLPETLGSLPELSVLDVSSNSLTGIISEIHFSRLSKLKFLGLSS 485
                   +     +   L  L +L  L +S N ++ + +    + L  L  L L S
Sbjct: 157 KLDTLSLEDNQISDIVP-LAGLTKLQNLYLSKNHISDLRA---LAGLKNLDVLELFS 209

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]} Length = 162

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.3 bits (101), Expect = 3e-05
 Identities = 24/137 (17%), Positives = 46/137 (33%), Gaps = 15/137 (10%)

Query: 593 VEIELLDLSNNHFSGPIPQNISGSMPNLIFLSVSGNRLTGKIPGSIGEMQLLQVIDLSRN 652
              + LDL        +      +    + L+   +     +      +  L  ++LS N
Sbjct: 22  GSQQALDLKGLRSDPDL-----VAQNIDVVLNRRSSMAA-TLRIIEENIPELLSLNLSNN 75

Query: 653 SISG--SISSSIGNCTFLKVLDLSYSSLSGVIPASLGQLTRLQSLHLNNNKLTGNLPSS- 709
            +     +SS +     LK+L+LS + L         +  +L+ L L+ N L+       
Sbjct: 76  RLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGNSLSDTFRDQS 135

Query: 710 ------FQNLTSLETLD 720
                  +    L  LD
Sbjct: 136 TYISAIRERFPKLLRLD 152

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]} Length = 162

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.9 bits (100), Expect = 4e-05
 Identities = 25/134 (18%), Positives = 43/134 (32%), Gaps = 5/134 (3%)

Query: 648 DLSRNSISGSISSSIGNCTFLKVLDLSYSSLSGVIPASLGQLTRLQSLHLNNNKLTGNLP 707
           +L    +   +   +          L    L       L        L+  ++     L 
Sbjct: 3   ELKPEQVE-QLKLIMSKRYDGSQQALDLKGLR--SDPDLVAQNIDVVLNRRSSMAA-TLR 58

Query: 708 SSFQNLTSLETLDLGNNRFSGNIP-SLLGNGFVGLRILSLRSNAFSGEIPSKLSNLSSLQ 766
              +N+  L +L+L NNR       S +      L+IL+L  N    E          L+
Sbjct: 59  IIEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLE 118

Query: 767 VLDLAENNLTGSIP 780
            L L  N+L+ +  
Sbjct: 119 ELWLDGNSLSDTFR 132

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]} Length = 162

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.3 bits (88), Expect = 0.001
 Identities = 18/97 (18%), Positives = 37/97 (38%), Gaps = 3/97 (3%)

Query: 638 IGEMQLLQVIDLSRNSISGSISSSIGNCTFLKVLDLSYSSLSGV--IPASLGQLTRLQSL 695
           +    +  V++   +  + ++     N   L  L+LS + L  +  + + + +   L+ L
Sbjct: 38  LVAQNIDVVLNRRSSMAA-TLRIIEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKIL 96

Query: 696 HLNNNKLTGNLPSSFQNLTSLETLDLGNNRFSGNIPS 732
           +L+ N+L             LE L L  N  S     
Sbjct: 97  NLSGNELKSERELDKIKGLKLEELWLDGNSLSDTFRD 133

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]} Length = 162

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.5 bits (96), Expect = 1e-04
 Identities = 18/83 (21%), Positives = 32/83 (38%), Gaps = 5/83 (6%)

Query: 649 LSRNSISGSISSSIGNCTFLKVLDLSYSSLSGVIPASLGQLTRLQSLHLNNNKLTGNLPS 708
           L+   I  +  +   N    + LDL    +  VI      L +  ++  ++N++      
Sbjct: 3   LTAELIEQA--AQYTNAVRDRELDLRGYKIP-VIENLGATLDQFDAIDFSDNEI--RKLD 57

Query: 709 SFQNLTSLETLDLGNNRFSGNIP 731
            F  L  L+TL + NNR      
Sbjct: 58  GFPLLRRLKTLLVNNNRICRIGE 80

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]} Length = 162

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.1 bits (95), Expect = 1e-04
 Identities = 23/156 (14%), Positives = 48/156 (30%), Gaps = 12/156 (7%)

Query: 410 LSYNLLQGPIPASLGNLKNLTKLNLPGNQLNGTLPETLGSLPELSVLDVSSNSLTGIISE 469
           L+  L++    A   N     +L+L G ++   +     +L +   +D S N +  +   
Sbjct: 3   LTAELIEQA--AQYTNAVRDRELDLRGYKIP-VIENLGATLDQFDAIDFSDNEIRKL--- 56

Query: 470 IHFSRLSKLKFLGLSSNSFILNVSSSWIPPFQVQSLNMRSCQLGPSFPSWLKTQQGVSFL 529
             F  L +LK L +++N                   ++    L  +    L     ++ L
Sbjct: 57  DGFPLLRRLKTLLVNNNRIC-----RIGEGLDQALPDLTELILTNNSLVELGDLDPLASL 111

Query: 530 -DFSNASISGPIPNWFWDISSKLSLLNVSLNQLQGQ 564
              +   I              +      +  L  Q
Sbjct: 112 KSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLDFQ 147

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]} Length = 162

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.0 bits (87), Expect = 0.002
 Identities = 15/79 (18%), Positives = 25/79 (31%), Gaps = 3/79 (3%)

Query: 845 QLTKLVGLVVLNLSRNHIGGQIPENISGLHQLASLDLSSNNLSGGIPSSLSSLSFLGYIN 904
           Q T  V    L+L    I   I    + L Q  ++D S N +          L  L  + 
Sbjct: 13  QYTNAVRDRELDLRGYKIP-VIENLGATLDQFDAIDFSDNEIR--KLDGFPLLRRLKTLL 69

Query: 905 LSRNQLSGKIPFEGHMTTF 923
           ++ N++             
Sbjct: 70  VNNNRICRIGEGLDQALPD 88

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]} Length = 162

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.2 bits (85), Expect = 0.003
 Identities = 15/83 (18%), Positives = 23/83 (27%), Gaps = 7/83 (8%)

Query: 701 KLTGNL---PSSFQNLTSLETLDLGNNRFSGNIPSLLGNGFVGLRILSLRSNAFSGEIPS 757
           KLT  L    + + N      LDL   +    I +L          +    N        
Sbjct: 2   KLTAELIEQAAQYTNAVRDRELDLRGYKIP-VIENLGAT-LDQFDAIDFSDNEI--RKLD 57

Query: 758 KLSNLSSLQVLDLAENNLTGSIP 780
               L  L+ L +  N +     
Sbjct: 58  GFPLLRRLKTLLVNNNRICRIGE 80

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]} Length = 199

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

 Score = 39.3 bits (90), Expect = 0.001
 Identities = 27/200 (13%), Positives = 57/200 (28%), Gaps = 17/200 (8%)

Query: 425 NLKNLTKLNLPGNQLNGTLPETLGSLPELSVLDVSSNSLTGIISEIHFSRLSKLKFLGLS 484
            L    K  L    +  T+  +   L +++ L      +  I        L+ L  +  S
Sbjct: 16  ALAEKMKTVLGKTNVTDTV--SQTDLDQVTTLQADRLGIKSIDG---VEYLNNLTQINFS 70

Query: 485 SNSFILNVSSSWIPPFQVQSLNMRSCQLGPSFPSWLKTQQGVSFLDFSNASISGPIPNWF 544
           +N          +       +N           +         F +              
Sbjct: 71  NNQLTDITPLKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITDIDPLKNLTNL 130

Query: 545 WDISSKLSLLNVSLNQLQGQLPNPLNIAPFADVDFRSNLLEGPIPL-PIVEIELLDLSNN 603
             +    + ++         +     +     ++F SN +    PL  +  +E LD+S+N
Sbjct: 131 NRLELSSNTIS--------DISALSGLTSLQQLNFSSNQVTDLKPLANLTTLERLDISSN 182

Query: 604 HFSGPIPQNISGSMPNLIFL 623
             S     ++   + NL  L
Sbjct: 183 KVSDI---SVLAKLTNLESL 199

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]} Length = 198

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

 Score = 37.7 bits (86), Expect = 0.003
 Identities = 14/60 (23%), Positives = 23/60 (38%), Gaps = 8/60 (13%)

Query: 666 TFLKVLDLSYSSLSGVIP------ASLGQLTRLQSLHLNNNKLTGNLPSSFQNLTSLETL 719
             +   +     L G+IP      A+L  L   + L L+ N +     SS   + +L  L
Sbjct: 18  KSVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEK--ISSLSGMENLRIL 75

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	1009
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	100.0
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	99.98
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	99.94
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	99.94
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	99.92
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	99.92
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	99.91
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	99.91
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	99.88
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	99.86
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	99.74
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	99.74
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	99.73
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	99.72
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	99.7
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	99.7
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	99.69
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	99.68
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	99.68
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	99.67
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.66
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.64
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.62
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.6
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	99.55
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	99.55
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	99.45
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	99.41
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	99.39
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	99.38
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	99.38
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	99.38
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	99.19
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	99.18
d2ifga3	156	High affinity nerve growth factor receptor, N-term	99.1
d2ifga3	156	High affinity nerve growth factor receptor, N-term	99.08
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	98.17
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	98.11
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	97.48
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	97.41
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	96.68
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	96.27

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=100.00  E-value=3.9e-37  Score=335.53  Aligned_cols=289  Identities=25%  Similarity=0.411  Sum_probs=217.0

Q ss_pred             CCCHHHHHHHHHhhhcCCCCCCCccCCC-CCCCCC--ccceeecCCC--CcEEEEecCCCC--C---CCCCCCCCCcCCE
Q 036375           31 NCSENDLDALIDFKNGLEDPESRLASWK-GSNCCQ--WHGISCDDDT--GAIVAINLGNPY--H---VVNSDSSGSLLEY  100 (1009)
Q Consensus        31 ~~~~~~~~~ll~~k~~~~~~~~~~~~W~-~~~~c~--w~gv~c~~~~--~~v~~l~l~~~~--g---i~~~l~~l~~L~~  100 (1009)
                      -|.++||+||++||+++.||. .+++|. ++|||.  |.||+|+..+  +||++|||++..  |   +|++++++++|++
T Consensus         2 ~c~~~e~~aLl~~k~~~~~~~-~l~sW~~~~d~C~~~w~gv~C~~~~~~~~v~~L~L~~~~l~g~~~lp~~l~~L~~L~~   80 (313)
T d1ogqa_           2 LCNPQDKQALLQIKKDLGNPT-TLSSWLPTTDCCNRTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNF   80 (313)
T ss_dssp             CSCHHHHHHHHHHHHHTTCCG-GGTTCCTTSCTTTTCSTTEEECCSSSCCCEEEEEEECCCCSSCEECCGGGGGCTTCSE
T ss_pred             CCCHHHHHHHHHHHHHCCCCC-cCCCCCCCCCCCCCcCCCeEEeCCCCcEEEEEEECCCCCCCCCCCCChHHhcCccccc
Confidence            599999999999999999874 689997 689995  9999999754  489999998864  3   7888888888888


Q ss_pred             EeCCC-CCCCCCCCCcccCCCCCCceeecccCCCCccCCCCCCCCCCCCeeeCCCccccccCCCcccccCCCCCCeEEcC
Q 036375          101 LDLSF-NTFNDIPIPEFLGSLENLQYLNLSEAGFTGVVPSSLGNLHRLQYFDVSAELFALSADSLDWLTGLVSLKHLAMN  179 (1009)
Q Consensus       101 LdLs~-~~~~~~~lp~~i~~l~~L~~L~Ls~~~~~~~lp~~l~~L~~L~~L~Ls~~~~~~~~~~~~~l~~l~~L~~L~l~  179 (1009)
                      |||++ |++.+ .+|..|+++++|++|+|++|++.+..|..+..+.+|++++++.|.+.                     
T Consensus        81 L~Ls~~N~l~g-~iP~~i~~L~~L~~L~Ls~N~l~~~~~~~~~~~~~L~~l~l~~N~~~---------------------  138 (313)
T d1ogqa_          81 LYIGGINNLVG-PIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALS---------------------  138 (313)
T ss_dssp             EEEEEETTEES-CCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEE---------------------
T ss_pred             ccccccccccc-ccccccccccccchhhhccccccccccccccchhhhccccccccccc---------------------
Confidence            88886 67877 68888888888888888888888877877888888888888877422                     


Q ss_pred             CccCCCCcchhhhhhcCCCCccEEEcCCCcCCCCCCCCCCCCCCC-CcEEECCCCCCCCCchhhhhcCCCCcEEEccCCc
Q 036375          180 RVDLSLVGSEWLGILKNLPNLTELHLSVCGLTGSITSITPVNLTS-PAVLDLSLNHFNSLFPNWLVNISTLVYVDLSDCD  258 (1009)
Q Consensus       180 ~~~l~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~-L~~L~L~~n~~~~~~p~~l~~l~~L~~L~L~~n~  258 (1009)
                           .   .++..+.++++|+++++++|.+.+.+|... ..+.. ++.++++.|++++..|..+..+..+ .++++.+.
T Consensus       139 -----~---~~p~~l~~l~~L~~l~l~~n~l~~~ip~~~-~~l~~l~~~l~~~~n~l~~~~~~~~~~l~~~-~l~l~~~~  208 (313)
T d1ogqa_         139 -----G---TLPPSISSLPNLVGITFDGNRISGAIPDSY-GSFSKLFTSMTISRNRLTGKIPPTFANLNLA-FVDLSRNM  208 (313)
T ss_dssp             -----S---CCCGGGGGCTTCCEEECCSSCCEEECCGGG-GCCCTTCCEEECCSSEEEEECCGGGGGCCCS-EEECCSSE
T ss_pred             -----c---cCchhhccCcccceeecccccccccccccc-ccccccccccccccccccccccccccccccc-cccccccc
Confidence                 1   145567777888888888888777777665 34444 4777788888777777777776554 57888887


Q ss_pred             CcccCCcccCCCCCCCEEEcCCCCCCCCcccccccCCCCCccEEEcccccccccCCccccCCCCCCEEEccCCcccccCc
Q 036375          259 LYGRIPIGFGELPNLQYLSLAGNNNLSGSCSQLFRGSWKKIQILNFASNKLHGKLPSSVANMTSLTNFDLFDKKVEGGIP  338 (1009)
Q Consensus       259 ~~~~~p~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~~~~~~~  338 (1009)
                      ..+.+|..++.+++|+.+++++|..  .+.+ ..++.+++|++|++++|+++|.+|.+++++++|++|++++|+++|.+|
T Consensus       209 ~~~~~~~~~~~~~~l~~l~~~~~~l--~~~~-~~~~~~~~L~~L~Ls~N~l~g~iP~~l~~L~~L~~L~Ls~N~l~g~iP  285 (313)
T d1ogqa_         209 LEGDASVLFGSDKNTQKIHLAKNSL--AFDL-GKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIP  285 (313)
T ss_dssp             EEECCGGGCCTTSCCSEEECCSSEE--CCBG-GGCCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECC
T ss_pred             ccccccccccccccccccccccccc--cccc-cccccccccccccCccCeecccCChHHhCCCCCCEEECcCCcccccCC
Confidence            7777777777778888888777642  3322 245556667777777777776777777777777777777777776666


Q ss_pred             hhhhcccCCCEEEcCCCc
Q 036375          339 SSIARLCYLKEFDLSGNN  356 (1009)
Q Consensus       339 ~~l~~l~~L~~L~l~~n~  356 (1009)
                      . ++++++|+.+++++|+
T Consensus       286 ~-~~~L~~L~~l~l~~N~  302 (313)
T d1ogqa_         286 Q-GGNLQRFDVSAYANNK  302 (313)
T ss_dssp             C-STTGGGSCGGGTCSSS
T ss_pred             C-cccCCCCCHHHhCCCc
Confidence            4 4566666666666665

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=99.98  E-value=1e-32  Score=300.29  Aligned_cols=257  Identities=32%  Similarity=0.580  Sum_probs=190.5

Q ss_pred             CCeEEccCCcCCc--cCcCcccCCCCCCEEECCC-CcCcccCCccccCCCCCCEEEccCccccCCCchhhcCCCCCCEEE
Q 036375          644 LQVIDLSRNSISG--SISSSIGNCTFLKVLDLSY-SSLSGVIPASLGQLTRLQSLHLNNNKLTGNLPSSFQNLTSLETLD  720 (1009)
Q Consensus       644 L~~L~Ls~N~l~~--~~p~~l~~l~~L~~L~Ls~-N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~  720 (1009)
                      ++.|+|++|.++|  .+|..++++++|++|+|++ |+++|.+|..|+++++|++|+|++|++.+..+..+..+..|+.++
T Consensus        52 v~~L~L~~~~l~g~~~lp~~l~~L~~L~~L~Ls~~N~l~g~iP~~i~~L~~L~~L~Ls~N~l~~~~~~~~~~~~~L~~l~  131 (313)
T d1ogqa_          52 VNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLD  131 (313)
T ss_dssp             EEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEE
T ss_pred             EEEEECCCCCCCCCCCCChHHhcCccccccccccccccccccccccccccccchhhhccccccccccccccchhhhcccc
Confidence            3444444444443  2445555555555555554 555555555555666666666666666655555566666666666


Q ss_pred             CcCCcccccCchhhhhcCcCCcEEEccCCcccccCCcccCCCCCC-CEEEccCCcCCCCCChhhhhhhhhhhccchhhhh
Q 036375          721 LGNNRFSGNIPSLLGNGFVGLRILSLRSNAFSGEIPSKLSNLSSL-QVLDLAENNLTGSIPGSVGDLKAMAHVQNIVKYL  799 (1009)
Q Consensus       721 L~~N~l~~~ip~~l~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L-~~L~Ls~N~l~~~~p~~~~~l~~L~~~~~~~~~~  799 (1009)
                      +++|.+.+.+|..+.. ++.++.+++++|.+.+.+|..+..+..+ +.+++++|+++|..|..+..+..           
T Consensus       132 l~~N~~~~~~p~~l~~-l~~L~~l~l~~n~l~~~ip~~~~~l~~l~~~l~~~~n~l~~~~~~~~~~l~~-----------  199 (313)
T d1ogqa_         132 FSYNALSGTLPPSISS-LPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNL-----------  199 (313)
T ss_dssp             CCSSEEESCCCGGGGG-CTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCCC-----------
T ss_pred             cccccccccCchhhcc-Ccccceeecccccccccccccccccccccccccccccccccccccccccccc-----------
Confidence            6666666666665553 6666666666666666666666666554 67788888888777766655432           


Q ss_pred             hccccccceeeceEEEeecCCCCCCCCceeEEEccCCccCCCCCccccCcCCCCeEEccCCcccccCCCCccCCCCCCEE
Q 036375          800 LFGRYRGIYYEENLVINTKGSSKDTPRLFHFIDLSGNNLHGDFPTQLTKLVGLVVLNLSRNHIGGQIPENISGLHQLASL  879 (1009)
Q Consensus       800 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L  879 (1009)
                                                   ..+++++|.+.|.+|..++.+++++.+++++|.+++.+| .++.+++|+.|
T Consensus       200 -----------------------------~~l~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~l~~~~~-~~~~~~~L~~L  249 (313)
T d1ogqa_         200 -----------------------------AFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLG-KVGLSKNLNGL  249 (313)
T ss_dssp             -----------------------------SEEECCSSEEEECCGGGCCTTSCCSEEECCSSEECCBGG-GCCCCTTCCEE
T ss_pred             -----------------------------ccccccccccccccccccccccccccccccccccccccc-ccccccccccc
Confidence                                         458889999999999999999999999999999998876 58889999999


Q ss_pred             eCCCCcCCCCCcccccCCCCCCeEeCCCCcceecCCCCCCCCcccCCcCCCCCCCCCCCCCCCC
Q 036375          880 DLSSNNLSGGIPSSLSSLSFLGYINLSRNQLSGKIPFEGHMTTFDASSFAGNPGLCGDPLPVKC  943 (1009)
Q Consensus       880 ~Ls~N~l~~~ip~~l~~l~~L~~L~ls~N~l~g~ip~~~~~~~~~~~~~~~n~~lc~~~~~~~c  943 (1009)
                      ||++|+++|.+|+.|+++++|++|||++|+|+|.||..+.+..++...+.||+.+||.|++ .|
T Consensus       250 ~Ls~N~l~g~iP~~l~~L~~L~~L~Ls~N~l~g~iP~~~~L~~L~~l~l~~N~~l~g~plp-~c  312 (313)
T d1ogqa_         250 DLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQGGNLQRFDVSAYANNKCLCGSPLP-AC  312 (313)
T ss_dssp             ECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCCSTTGGGSCGGGTCSSSEEESTTSS-CC
T ss_pred             cCccCeecccCChHHhCCCCCCEEECcCCcccccCCCcccCCCCCHHHhCCCccccCCCCC-CC
Confidence            9999999999999999999999999999999999999888888998999999999999875 66

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.94  E-value=1.7e-25  Score=250.86  Aligned_cols=190  Identities=30%  Similarity=0.444  Sum_probs=104.4

Q ss_pred             cCCCCCCEEECCCCcCcccCCccccCCCCCCEEEccCccccCCCchhhcCCCCCCEEECcCCcccccCchhhhhcCcCCc
Q 036375          663 GNCTFLKVLDLSYSSLSGVIPASLGQLTRLQSLHLNNNKLTGNLPSSFQNLTSLETLDLGNNRFSGNIPSLLGNGFVGLR  742 (1009)
Q Consensus       663 ~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~ip~~l~~~l~~L~  742 (1009)
                      ..+++++.+++++|.+++..|  +...++|++|++++|+++. + ..+..+++|+.|++++|.+++. +. +. .+++|+
T Consensus       194 ~~l~~~~~l~l~~n~i~~~~~--~~~~~~L~~L~l~~n~l~~-~-~~l~~l~~L~~L~l~~n~l~~~-~~-~~-~~~~L~  266 (384)
T d2omza2         194 AKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLKD-I-GTLASLTNLTDLDLANNQISNL-AP-LS-GLTKLT  266 (384)
T ss_dssp             GGCTTCSEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCC-C-GGGGGCTTCSEEECCSSCCCCC-GG-GT-TCTTCS
T ss_pred             ccccccceeeccCCccCCCCc--ccccCCCCEEECCCCCCCC-c-chhhcccccchhccccCccCCC-Cc-cc-ccccCC
Confidence            334444444444444443322  2233444444444444442 1 2344445555555555554422 21 11 245555


Q ss_pred             EEEccCCcccccCCcccCCCCCCCEEEccCCcCCCCCChhhhhhhhhhhccchhhhhhccccccceeeceEEEeecCCCC
Q 036375          743 ILSLRSNAFSGEIPSKLSNLSSLQVLDLAENNLTGSIPGSVGDLKAMAHVQNIVKYLLFGRYRGIYYEENLVINTKGSSK  822 (1009)
Q Consensus       743 ~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  822 (1009)
                      .|++++|++++..  .+..++.++.+++++|++++.  ..+..++.+                                 
T Consensus       267 ~L~l~~~~l~~~~--~~~~~~~l~~l~~~~n~l~~~--~~~~~~~~l---------------------------------  309 (384)
T d2omza2         267 ELKLGANQISNIS--PLAGLTALTNLELNENQLEDI--SPISNLKNL---------------------------------  309 (384)
T ss_dssp             EEECCSSCCCCCG--GGTTCTTCSEEECCSSCCSCC--GGGGGCTTC---------------------------------
T ss_pred             EeeccCcccCCCC--ccccccccccccccccccccc--cccchhccc---------------------------------
Confidence            5555555554322  244555666666666666542  123333332                                 


Q ss_pred             CCCCceeEEEccCCccCCCCCccccCcCCCCeEEccCCcccccCCCCccCCCCCCEEeCCCCcCCCCCcccccCCCCCCe
Q 036375          823 DTPRLFHFIDLSGNNLHGDFPTQLTKLVGLVVLNLSRNHIGGQIPENISGLHQLASLDLSSNNLSGGIPSSLSSLSFLGY  902 (1009)
Q Consensus       823 ~~~~~l~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~  902 (1009)
                            +.|++++|++++..|  +..+++|+.|++++|++++. + .++++++|++|++++|++++.+|  ++++++|++
T Consensus       310 ------~~L~ls~n~l~~l~~--l~~l~~L~~L~L~~n~l~~l-~-~l~~l~~L~~L~l~~N~l~~l~~--l~~l~~L~~  377 (384)
T d2omza2         310 ------TYLTLYFNNISDISP--VSSLTKLQRLFFANNKVSDV-S-SLANLTNINWLSAGHNQISDLTP--LANLTRITQ  377 (384)
T ss_dssp             ------SEEECCSSCCSCCGG--GGGCTTCCEEECCSSCCCCC-G-GGGGCTTCCEEECCSSCCCBCGG--GTTCTTCSE
T ss_pred             ------CeEECCCCCCCCCcc--cccCCCCCEEECCCCCCCCC-h-hHcCCCCCCEEECCCCcCCCChh--hccCCCCCE
Confidence                  566677777665432  66777778888888877753 2 57777888888888888876654  677788888


Q ss_pred             EeCCCC
Q 036375          903 INLSRN  908 (1009)
Q Consensus       903 L~ls~N  908 (1009)
                      |++++|
T Consensus       378 L~L~~N  383 (384)
T d2omza2         378 LGLNDQ  383 (384)
T ss_dssp             EECCCE
T ss_pred             eeCCCC
Confidence            888776

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.94  E-value=1.7e-24  Score=242.73  Aligned_cols=192  Identities=29%  Similarity=0.429  Sum_probs=117.1

Q ss_pred             cccCCCCCeEEccCCcCCccCcCcccCCCCCCEEECCCCcCcccCCccccCCCCCCEEEccCccccCCCchhhcCCCCCC
Q 036375          638 IGEMQLLQVIDLSRNSISGSISSSIGNCTFLKVLDLSYSSLSGVIPASLGQLTRLQSLHLNNNKLTGNLPSSFQNLTSLE  717 (1009)
Q Consensus       638 ~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~  717 (1009)
                      +..+++++.+++++|.+++..|  +..+++|++|++++|+++..  +.+..+++|+.|++++|++++..  .+..+++|+
T Consensus       193 ~~~l~~~~~l~l~~n~i~~~~~--~~~~~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~--~~~~~~~L~  266 (384)
T d2omza2         193 LAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLKDI--GTLASLTNLTDLDLANNQISNLA--PLSGLTKLT  266 (384)
T ss_dssp             GGGCTTCSEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCG--GGTTCTTCS
T ss_pred             cccccccceeeccCCccCCCCc--ccccCCCCEEECCCCCCCCc--chhhcccccchhccccCccCCCC--cccccccCC
Confidence            3344455555555555554332  33445555555555555532  24555566666666666655432  255556666


Q ss_pred             EEECcCCcccccCchhhhhcCcCCcEEEccCCcccccCCcccCCCCCCCEEEccCCcCCCCCChhhhhhhhhhhccchhh
Q 036375          718 TLDLGNNRFSGNIPSLLGNGFVGLRILSLRSNAFSGEIPSKLSNLSSLQVLDLAENNLTGSIPGSVGDLKAMAHVQNIVK  797 (1009)
Q Consensus       718 ~L~L~~N~l~~~ip~~l~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~~~~~~~  797 (1009)
                      +|++++|++++ ++.. . .++.++.++++.|.+++  ...+..+++++.|++++|++++..|  +..+++|        
T Consensus       267 ~L~l~~~~l~~-~~~~-~-~~~~l~~l~~~~n~l~~--~~~~~~~~~l~~L~ls~n~l~~l~~--l~~l~~L--------  331 (384)
T d2omza2         267 ELKLGANQISN-ISPL-A-GLTALTNLELNENQLED--ISPISNLKNLTYLTLYFNNISDISP--VSSLTKL--------  331 (384)
T ss_dssp             EEECCSSCCCC-CGGG-T-TCTTCSEEECCSSCCSC--CGGGGGCTTCSEEECCSSCCSCCGG--GGGCTTC--------
T ss_pred             EeeccCcccCC-CCcc-c-ccccccccccccccccc--ccccchhcccCeEECCCCCCCCCcc--cccCCCC--------
Confidence            66666666652 3322 1 35666666666666653  2235666777777777777765432  4455544        


Q ss_pred             hhhccccccceeeceEEEeecCCCCCCCCceeEEEccCCccCCCCCccccCcCCCCeEEccCCcccccCCCCccCCCCCC
Q 036375          798 YLLFGRYRGIYYEENLVINTKGSSKDTPRLFHFIDLSGNNLHGDFPTQLTKLVGLVVLNLSRNHIGGQIPENISGLHQLA  877 (1009)
Q Consensus       798 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~  877 (1009)
                                                     +.|++++|++++ +| .++++++|++|++++|++++.+|  ++++++|+
T Consensus       332 -------------------------------~~L~L~~n~l~~-l~-~l~~l~~L~~L~l~~N~l~~l~~--l~~l~~L~  376 (384)
T d2omza2         332 -------------------------------QRLFFANNKVSD-VS-SLANLTNINWLSAGHNQISDLTP--LANLTRIT  376 (384)
T ss_dssp             -------------------------------CEEECCSSCCCC-CG-GGGGCTTCCEEECCSSCCCBCGG--GTTCTTCS
T ss_pred             -------------------------------CEEECCCCCCCC-Ch-hHcCCCCCCEEECCCCcCCCChh--hccCCCCC
Confidence                                           677777777764 33 57888888888888888887765  78888888


Q ss_pred             EEeCCCCc
Q 036375          878 SLDLSSNN  885 (1009)
Q Consensus       878 ~L~Ls~N~  885 (1009)
                      .|+|++|.
T Consensus       377 ~L~L~~Na  384 (384)
T d2omza2         377 QLGLNDQA  384 (384)
T ss_dssp             EEECCCEE
T ss_pred             EeeCCCCc
Confidence            99888873

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.92  E-value=6e-24  Score=229.52  Aligned_cols=272  Identities=21%  Similarity=0.285  Sum_probs=222.1

Q ss_pred             CccEEEccCCcCCCcCCchhhcCCCCccEEEccCCcccccCCcccccCCCCCeEEccCCcCCccCcCcccCCCCCCEEEC
Q 036375          594 EIELLDLSNNHFSGPIPQNISGSMPNLIFLSVSGNRLTGKIPGSIGEMQLLQVIDLSRNSISGSISSSIGNCTFLKVLDL  673 (1009)
Q Consensus       594 ~L~~L~Ls~n~l~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L  673 (1009)
                      ..+.+|-+++.++ .+|..+   .+++++|++++|+++...+.+|.++++|++|++++|.+....|..|.+++.|++|++
T Consensus        11 ~~~~~~C~~~~L~-~lP~~l---~~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~l~~n~~~~i~~~~f~~l~~L~~L~l   86 (305)
T d1xkua_          11 HLRVVQCSDLGLE-KVPKDL---PPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYL   86 (305)
T ss_dssp             ETTEEECTTSCCC-SCCCSC---CTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEEC
T ss_pred             cCCEEEecCCCCC-ccCCCC---CCCCCEEECcCCcCCCcChhHhhccccccccccccccccccchhhhhCCCccCEecc
Confidence            5677888888887 777754   367999999999998887788999999999999999999888888999999999999


Q ss_pred             CCCcCcccCCccccCCCCCCEEEccCccccCCCchhhcCCCCCCEEECcCCcccc--cCchhhhhcCcCCcEEEccCCcc
Q 036375          674 SYSSLSGVIPASLGQLTRLQSLHLNNNKLTGNLPSSFQNLTSLETLDLGNNRFSG--NIPSLLGNGFVGLRILSLRSNAF  751 (1009)
Q Consensus       674 s~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~--~ip~~l~~~l~~L~~L~L~~N~l  751 (1009)
                      ++|+++. +|..+  ...++.|++.+|.+.+..+..+.....+..++...|....  ..+..+ ..+++|+.+++++|.+
T Consensus        87 ~~n~l~~-l~~~~--~~~l~~L~~~~n~l~~l~~~~~~~~~~~~~l~~~~n~~~~~~~~~~~~-~~l~~L~~l~l~~n~l  162 (305)
T d1xkua_          87 SKNQLKE-LPEKM--PKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAF-QGMKKLSYIRIADTNI  162 (305)
T ss_dssp             CSSCCSB-CCSSC--CTTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGG-GGCTTCCEEECCSSCC
T ss_pred             cCCccCc-Cccch--hhhhhhhhccccchhhhhhhhhhccccccccccccccccccCCCcccc-ccccccCccccccCCc
Confidence            9999985 44433  3678999999999998777778888888999998886542  223333 3588999999999988


Q ss_pred             cccCCcccCCCCCCCEEEccCCcCCCCCChhhhhhhhhhhccchhhhhhccccccceeeceEEEeecCCCCCCCCceeEE
Q 036375          752 SGEIPSKLSNLSSLQVLDLAENNLTGSIPGSVGDLKAMAHVQNIVKYLLFGRYRGIYYEENLVINTKGSSKDTPRLFHFI  831 (1009)
Q Consensus       752 ~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L  831 (1009)
                      + .+|..+  .++|+.|++++|..++..+..+..++.+                                       +.|
T Consensus       163 ~-~l~~~~--~~~L~~L~l~~n~~~~~~~~~~~~~~~l---------------------------------------~~L  200 (305)
T d1xkua_         163 T-TIPQGL--PPSLTELHLDGNKITKVDAASLKGLNNL---------------------------------------AKL  200 (305)
T ss_dssp             C-SCCSSC--CTTCSEEECTTSCCCEECTGGGTTCTTC---------------------------------------CEE
T ss_pred             c-ccCccc--CCccCEEECCCCcCCCCChhHhhccccc---------------------------------------ccc
Confidence            7 455443  6789999999999998888888777666                                       788


Q ss_pred             EccCCccCCCCCccccCcCCCCeEEccCCcccccCCCCccCCCCCCEEeCCCCcCCCCCccc------ccCCCCCCeEeC
Q 036375          832 DLSGNNLHGDFPTQLTKLVGLVVLNLSRNHIGGQIPENISGLHQLASLDLSSNNLSGGIPSS------LSSLSFLGYINL  905 (1009)
Q Consensus       832 ~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~------l~~l~~L~~L~l  905 (1009)
                      ++++|.+++..|..+.++++|++|+|++|+|+ .+|++|..+++|++|+|++|+|+...+..      +..+.+|+.|++
T Consensus       201 ~~s~n~l~~~~~~~~~~l~~L~~L~L~~N~L~-~lp~~l~~l~~L~~L~Ls~N~i~~i~~~~f~~~~~~~~~~~L~~L~L  279 (305)
T d1xkua_         201 GLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSL  279 (305)
T ss_dssp             ECCSSCCCEECTTTGGGSTTCCEEECCSSCCS-SCCTTTTTCSSCCEEECCSSCCCCCCTTSSSCSSCCTTSCCCSEEEC
T ss_pred             ccccccccccccccccccccceeeeccccccc-ccccccccccCCCEEECCCCccCccChhhccCcchhcccCCCCEEEC
Confidence            99999999988999999999999999999998 56788999999999999999998654333      345788999999


Q ss_pred             CCCcce-ecCCC
Q 036375          906 SRNQLS-GKIPF  916 (1009)
Q Consensus       906 s~N~l~-g~ip~  916 (1009)
                      ++|++. +++|.
T Consensus       280 ~~N~~~~~~~~~  291 (305)
T d1xkua_         280 FSNPVQYWEIQP  291 (305)
T ss_dssp             CSSSSCGGGSCG
T ss_pred             CCCcCccCcCCH
Confidence            999984 56654

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.92  E-value=1.2e-23  Score=227.22  Aligned_cols=280  Identities=22%  Similarity=0.271  Sum_probs=234.0

Q ss_pred             eEeccCCCCCCCCCCC-CCCccEEEccCCcCCCcCCchhhcCCCCccEEEccCCcccccCCcccccCCCCCeEEccCCcC
Q 036375          576 DVDFRSNLLEGPIPLP-IVEIELLDLSNNHFSGPIPQNISGSMPNLIFLSVSGNRLTGKIPGSIGEMQLLQVIDLSRNSI  654 (1009)
Q Consensus       576 ~l~l~~n~l~~~~~~~-~~~L~~L~Ls~n~l~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l  654 (1009)
                      .++.++..++. +|.. .+++++|++++|+++ .+|+..+..+++|++|++++|.+....|.+|.++++|++|++++|++
T Consensus        14 ~~~C~~~~L~~-lP~~l~~~l~~L~Ls~N~i~-~l~~~~f~~l~~L~~L~l~~n~~~~i~~~~f~~l~~L~~L~l~~n~l   91 (305)
T d1xkua_          14 VVQCSDLGLEK-VPKDLPPDTALLDLQNNKIT-EIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQL   91 (305)
T ss_dssp             EEECTTSCCCS-CCCSCCTTCCEEECCSSCCC-CBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCC
T ss_pred             EEEecCCCCCc-cCCCCCCCCCEEECcCCcCC-CcChhHhhccccccccccccccccccchhhhhCCCccCEecccCCcc
Confidence            34444444442 2322 368999999999998 78877788999999999999999999899999999999999999999


Q ss_pred             CccCcCcccCCCCCCEEECCCCcCcccCCccccCCCCCCEEEccCcccc--CCCchhhcCCCCCCEEECcCCcccccCch
Q 036375          655 SGSISSSIGNCTFLKVLDLSYSSLSGVIPASLGQLTRLQSLHLNNNKLT--GNLPSSFQNLTSLETLDLGNNRFSGNIPS  732 (1009)
Q Consensus       655 ~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~--~~~p~~~~~l~~L~~L~L~~N~l~~~ip~  732 (1009)
                      +.. |..  ....++.|++++|.+.+..+..+.....++.++...|...  ...+..+..+++|+.+++++|.++ .+|.
T Consensus        92 ~~l-~~~--~~~~l~~L~~~~n~l~~l~~~~~~~~~~~~~l~~~~n~~~~~~~~~~~~~~l~~L~~l~l~~n~l~-~l~~  167 (305)
T d1xkua_          92 KEL-PEK--MPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNIT-TIPQ  167 (305)
T ss_dssp             SBC-CSS--CCTTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCC-SCCS
T ss_pred             CcC-ccc--hhhhhhhhhccccchhhhhhhhhhccccccccccccccccccCCCccccccccccCccccccCCcc-ccCc
Confidence            854 443  3458999999999999887777888889999999888644  445667899999999999999998 6776


Q ss_pred             hhhhcCcCCcEEEccCCcccccCCcccCCCCCCCEEEccCCcCCCCCChhhhhhhhhhhccchhhhhhccccccceeece
Q 036375          733 LLGNGFVGLRILSLRSNAFSGEIPSKLSNLSSLQVLDLAENNLTGSIPGSVGDLKAMAHVQNIVKYLLFGRYRGIYYEEN  812 (1009)
Q Consensus       733 ~l~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~  812 (1009)
                      .+   +++|+.|++++|...+..+..+..++.+++|++++|.+++..|..+..+++|                       
T Consensus       168 ~~---~~~L~~L~l~~n~~~~~~~~~~~~~~~l~~L~~s~n~l~~~~~~~~~~l~~L-----------------------  221 (305)
T d1xkua_         168 GL---PPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHL-----------------------  221 (305)
T ss_dssp             SC---CTTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTC-----------------------
T ss_pred             cc---CCccCEEECCCCcCCCCChhHhhccccccccccccccccccccccccccccc-----------------------
Confidence            53   7899999999999999999999999999999999999999888888888877                       


Q ss_pred             EEEeecCCCCCCCCceeEEEccCCccCCCCCccccCcCCCCeEEccCCcccccCCCC------ccCCCCCCEEeCCCCcC
Q 036375          813 LVINTKGSSKDTPRLFHFIDLSGNNLHGDFPTQLTKLVGLVVLNLSRNHIGGQIPEN------ISGLHQLASLDLSSNNL  886 (1009)
Q Consensus       813 ~~~~~~~~~~~~~~~l~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~------l~~l~~L~~L~Ls~N~l  886 (1009)
                                      ++|+|++|.|+ .+|..+..+++|++|+|++|+|+......      +..+.+|+.|+|++|.+
T Consensus       222 ----------------~~L~L~~N~L~-~lp~~l~~l~~L~~L~Ls~N~i~~i~~~~f~~~~~~~~~~~L~~L~L~~N~~  284 (305)
T d1xkua_         222 ----------------RELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPV  284 (305)
T ss_dssp             ----------------CEEECCSSCCS-SCCTTTTTCSSCCEEECCSSCCCCCCTTSSSCSSCCTTSCCCSEEECCSSSS
T ss_pred             ----------------eeeeccccccc-ccccccccccCCCEEECCCCccCccChhhccCcchhcccCCCCEEECCCCcC
Confidence                            89999999998 56889999999999999999999764444      34678899999999998


Q ss_pred             C--CCCcccccCCCCCCeEe
Q 036375          887 S--GGIPSSLSSLSFLGYIN  904 (1009)
Q Consensus       887 ~--~~ip~~l~~l~~L~~L~  904 (1009)
                      .  ...|..|.-+....+++
T Consensus       285 ~~~~~~~~~f~~~~~~~~~~  304 (305)
T d1xkua_         285 QYWEIQPSTFRCVYVRAAVQ  304 (305)
T ss_dssp             CGGGSCGGGGTTCCCGGGEE
T ss_pred             ccCcCCHhHhcccccCcccc
Confidence            6  45667777666555544

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.91  E-value=2.3e-24  Score=229.93  Aligned_cols=268  Identities=25%  Similarity=0.264  Sum_probs=162.5

Q ss_pred             EEEccCCcCCCcCCchhhcCCCCccEEEccCCcccccCCcccccCCCCCeEEccCCcCCccCcCcccCCCCCCEEECC-C
Q 036375          597 LLDLSNNHFSGPIPQNISGSMPNLIFLSVSGNRLTGKIPGSIGEMQLLQVIDLSRNSISGSISSSIGNCTFLKVLDLS-Y  675 (1009)
Q Consensus       597 ~L~Ls~n~l~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls-~  675 (1009)
                      .++.+++.++ .+|..+   .+.+++|+|++|+++...+.+|.++++|++|++++|++.+..+..+.+++.++.++.. .
T Consensus        15 ~v~c~~~~L~-~iP~~i---p~~~~~L~Ls~N~i~~i~~~~f~~l~~L~~L~ls~n~l~~i~~~~~~~~~~~~~l~~~~~   90 (284)
T d1ozna_          15 TTSCPQQGLQ-AVPVGI---PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDN   90 (284)
T ss_dssp             EEECCSSCCS-SCCTTC---CTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSC
T ss_pred             EEEcCCCCCC-ccCCCC---CCCCCEEECcCCcCCCCCHHHhhccccccccccccccccccccccccccccccccccccc
Confidence            4456666665 666543   2456777777777776666667777777777777777776666666667777776654 4


Q ss_pred             CcCcccCCccccCCCCCCEEEccCccccCCCchhhcCCCCCCEEECcCCcccccCchhhhhcCcCCcEEEccCCcccccC
Q 036375          676 SSLSGVIPASLGQLTRLQSLHLNNNKLTGNLPSSFQNLTSLETLDLGNNRFSGNIPSLLGNGFVGLRILSLRSNAFSGEI  755 (1009)
Q Consensus       676 N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~ip~~l~~~l~~L~~L~L~~N~l~~~~  755 (1009)
                      |.++...|..|.++++|++|++++|.+....+..+...++|+.+++++|.++ .+|...+..+++|+.|++++|++++..
T Consensus        91 ~~~~~l~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~l~l~~N~l~-~i~~~~f~~~~~L~~L~l~~N~l~~l~  169 (284)
T d1ozna_          91 AQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQ-ALPDDTFRDLGNLTHLFLHGNRISSVP  169 (284)
T ss_dssp             TTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCCCEEC
T ss_pred             cccccccchhhcccccCCEEecCCcccccccccccchhcccchhhhcccccc-ccChhHhccccchhhcccccCcccccc
Confidence            5555555666777777777777777776555566666667777777777776 444333334666666666666666655


Q ss_pred             CcccCCCCCCCEEEccCCcCCCCCChhhhhhhhhhhccchhhhhhccccccceeeceEEEeecCCCCCCCCceeEEEccC
Q 036375          756 PSKLSNLSSLQVLDLAENNLTGSIPGSVGDLKAMAHVQNIVKYLLFGRYRGIYYEENLVINTKGSSKDTPRLFHFIDLSG  835 (1009)
Q Consensus       756 p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~Ls~  835 (1009)
                      +..|.++++|+.+++++|++++..|..|..++++                                       ++||+++
T Consensus       170 ~~~f~~l~~L~~l~l~~N~l~~i~~~~f~~l~~L---------------------------------------~~L~l~~  210 (284)
T d1ozna_         170 ERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRL---------------------------------------MTLYLFA  210 (284)
T ss_dssp             TTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTC---------------------------------------CEEECCS
T ss_pred             hhhhccccccchhhhhhccccccChhHhhhhhhc---------------------------------------ccccccc
Confidence            6666666666666666666666666666555554                                       5566666


Q ss_pred             CccCCCCCccccCcCCCCeEEccCCcccccCCCCccCCCCCCEEeCCCCcCCCCCcccccCCCCCCeEeCCCCccee
Q 036375          836 NNLHGDFPTQLTKLVGLVVLNLSRNHIGGQIPENISGLHQLASLDLSSNNLSGGIPSSLSSLSFLGYINLSRNQLSG  912 (1009)
Q Consensus       836 N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~ls~N~l~g  912 (1009)
                      |++++..|..|+++.+|++|+|++|.+...-+. ..-...++.+....+++....|..+.+   ....+++.+.|+|
T Consensus       211 N~i~~~~~~~~~~~~~L~~L~l~~N~l~C~C~~-~~l~~~l~~~~~~~~~~~C~~p~~l~g---~~l~~l~~~~l~g  283 (284)
T d1ozna_         211 NNLSALPTEALAPLRALQYLRLNDNPWVCDCRA-RPLWAWLQKFRGSSSEVPCSLPQRLAG---RDLKRLAANDLQG  283 (284)
T ss_dssp             SCCSCCCHHHHTTCTTCCEEECCSSCEECSGGG-HHHHHHHHHCCSEECCCBEEESGGGTT---CBGGGSCGGGSCC
T ss_pred             cccccccccccccccccCEEEecCCCCCCCccc-hHHHHHHHhCcCCCCceEeCCchHHcC---CccccCCHHHCCC
Confidence            666666666666666666666666666543211 011122334444555555555555443   2334444554444

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.91  E-value=1.8e-23  Score=223.00  Aligned_cols=227  Identities=25%  Similarity=0.261  Sum_probs=160.7

Q ss_pred             EEccCCcCCccCcCcccCCCCCCEEECCCCcCcccCCccccCCCCCCEEEccCccccCCCchhhcCCCCCCEEECcCCcc
Q 036375          647 IDLSRNSISGSISSSIGNCTFLKVLDLSYSSLSGVIPASLGQLTRLQSLHLNNNKLTGNLPSSFQNLTSLETLDLGNNRF  726 (1009)
Q Consensus       647 L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l  726 (1009)
                      ++.++++++ .+|..+.  +++++|+|++|+|++..+.+|.++++|++|++++|++.+..+..+..++.++.++...+..
T Consensus        16 v~c~~~~L~-~iP~~ip--~~~~~L~Ls~N~i~~i~~~~f~~l~~L~~L~ls~n~l~~i~~~~~~~~~~~~~l~~~~~~~   92 (284)
T d1ozna_          16 TSCPQQGLQ-AVPVGIP--AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQ   92 (284)
T ss_dssp             EECCSSCCS-SCCTTCC--TTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTT
T ss_pred             EEcCCCCCC-ccCCCCC--CCCCEEECcCCcCCCCCHHHhhccccccccccccccccccccccccccccccccccccccc
Confidence            344444444 3343332  3456666666666655555566666666666666666655555566666666665543322


Q ss_pred             cccCchhhhhcCcCCcEEEccCCcccccCCcccCCCCCCCEEEccCCcCCCCCChhhhhhhhhhhccchhhhhhcccccc
Q 036375          727 SGNIPSLLGNGFVGLRILSLRSNAFSGEIPSKLSNLSSLQVLDLAENNLTGSIPGSVGDLKAMAHVQNIVKYLLFGRYRG  806 (1009)
Q Consensus       727 ~~~ip~~l~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~~~~~~~~~~~~~~~~  806 (1009)
                      ...++...+.++++|+.|++++|.+....+..+...++|+.+++++|++++..+..|..++.+                 
T Consensus        93 ~~~l~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~l~l~~N~l~~i~~~~f~~~~~L-----------------  155 (284)
T d1ozna_          93 LRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNL-----------------  155 (284)
T ss_dssp             CCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTC-----------------
T ss_pred             cccccchhhcccccCCEEecCCcccccccccccchhcccchhhhccccccccChhHhccccch-----------------
Confidence            224433333346666677777766665555566677777788888888776666666666555                 


Q ss_pred             ceeeceEEEeecCCCCCCCCceeEEEccCCccCCCCCccccCcCCCCeEEccCCcccccCCCCccCCCCCCEEeCCCCcC
Q 036375          807 IYYEENLVINTKGSSKDTPRLFHFIDLSGNNLHGDFPTQLTKLVGLVVLNLSRNHIGGQIPENISGLHQLASLDLSSNNL  886 (1009)
Q Consensus       807 ~~~~~~~~~~~~~~~~~~~~~l~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l  886 (1009)
                                            +.|++++|++++..|..|.++++|+.+++++|++++..|..|.++++|++||+++|++
T Consensus       156 ----------------------~~L~l~~N~l~~l~~~~f~~l~~L~~l~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~i  213 (284)
T d1ozna_         156 ----------------------THLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNL  213 (284)
T ss_dssp             ----------------------CEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCC
T ss_pred             ----------------------hhcccccCcccccchhhhccccccchhhhhhccccccChhHhhhhhhccccccccccc
Confidence                                  7788888888877888889999999999999999999999999999999999999999


Q ss_pred             CCCCcccccCCCCCCeEeCCCCcceecCC
Q 036375          887 SGGIPSSLSSLSFLGYINLSRNQLSGKIP  915 (1009)
Q Consensus       887 ~~~ip~~l~~l~~L~~L~ls~N~l~g~ip  915 (1009)
                      ++..|..|+.+++|++|++++|++.+..+
T Consensus       214 ~~~~~~~~~~~~~L~~L~l~~N~l~C~C~  242 (284)
T d1ozna_         214 SALPTEALAPLRALQYLRLNDNPWVCDCR  242 (284)
T ss_dssp             SCCCHHHHTTCTTCCEEECCSSCEECSGG
T ss_pred             ccccccccccccccCEEEecCCCCCCCcc
Confidence            99999999999999999999999987655

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.88  E-value=5.3e-22  Score=208.85  Aligned_cols=199  Identities=26%  Similarity=0.291  Sum_probs=134.3

Q ss_pred             CCCEEECCCCcCcccCCccccCCCCCCEEEccCccccCCCchhhcCCCCCCEEECcCCcccccCchhhhhcCcCCcEEEc
Q 036375          667 FLKVLDLSYSSLSGVIPASLGQLTRLQSLHLNNNKLTGNLPSSFQNLTSLETLDLGNNRFSGNIPSLLGNGFVGLRILSL  746 (1009)
Q Consensus       667 ~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~ip~~l~~~l~~L~~L~L  746 (1009)
                      .+.+.+.++++++ .+|+.+.  +++++|+|++|++++..+.+|.++++|++|+|++|+++ .+|.. . .+++|+.|++
T Consensus        11 ~~~~v~C~~~~L~-~iP~~lp--~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~L~~N~l~-~l~~~-~-~l~~L~~L~L   84 (266)
T d1p9ag_          11 SHLEVNCDKRNLT-ALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELT-KLQVD-G-TLPVLGTLDL   84 (266)
T ss_dssp             TCCEEECTTSCCS-SCCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCC-EEECC-S-CCTTCCEEEC
T ss_pred             CCeEEEccCCCCC-eeCcCcC--cCCCEEECcCCcCCCcCHHHhhcccccccccccccccc-ccccc-c-cccccccccc
Confidence            3444444444444 2343332  34555555555555444444555555555555555554 34432 1 3566666666


Q ss_pred             cCCcccccCCcccCCCCCCCEEEccCCcCCCCCChhhhhhhhhhhccchhhhhhccccccceeeceEEEeecCCCCCCCC
Q 036375          747 RSNAFSGEIPSKLSNLSSLQVLDLAENNLTGSIPGSVGDLKAMAHVQNIVKYLLFGRYRGIYYEENLVINTKGSSKDTPR  826 (1009)
Q Consensus       747 ~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  826 (1009)
                      ++|+++ ..+..+..+++|+.|++++|++.+..+..+..+..+                                     
T Consensus        85 s~N~l~-~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~l-------------------------------------  126 (266)
T d1p9ag_          85 SHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGEL-------------------------------------  126 (266)
T ss_dssp             CSSCCS-SCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTC-------------------------------------
T ss_pred             cccccc-ccccccccccccccccccccccceeecccccccccc-------------------------------------
Confidence            666665 335556677777777777777776555555555444                                     


Q ss_pred             ceeEEEccCCccCCCCCccccCcCCCCeEEccCCcccccCCCCccCCCCCCEEeCCCCcCCCCCcccccCCCCCCeEeCC
Q 036375          827 LFHFIDLSGNNLHGDFPTQLTKLVGLVVLNLSRNHIGGQIPENISGLHQLASLDLSSNNLSGGIPSSLSSLSFLGYINLS  906 (1009)
Q Consensus       827 ~l~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~ls  906 (1009)
                        ..|++++|.+++..+..+..++.++.|++++|++++.+++.|..+++|++|||++|+|+ .+|..+..+++|++|+++
T Consensus       127 --~~L~l~~n~l~~l~~~~~~~l~~l~~l~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~L~-~lp~~~~~~~~L~~L~L~  203 (266)
T d1p9ag_         127 --QELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLH  203 (266)
T ss_dssp             --CEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCCCSEEECC
T ss_pred             --ccccccccccceeccccccccccchhcccccccccccCccccccccccceeecccCCCc-ccChhHCCCCCCCEEEec
Confidence              67778888887777777888888999999999999888888999999999999999998 688888888999999999


Q ss_pred             CCccee
Q 036375          907 RNQLSG  912 (1009)
Q Consensus       907 ~N~l~g  912 (1009)
                      +|++..
T Consensus       204 ~Np~~C  209 (266)
T d1p9ag_         204 GNPWLC  209 (266)
T ss_dssp             SCCBCC
T ss_pred             CCCCCC
Confidence            998764

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.86  E-value=4.2e-21  Score=201.87  Aligned_cols=200  Identities=27%  Similarity=0.275  Sum_probs=143.5

Q ss_pred             CCCCeEEccCCcCCccCcCcccCCCCCCEEECCCCcCcccCCccccCCCCCCEEEccCccccCCCchhhcCCCCCCEEEC
Q 036375          642 QLLQVIDLSRNSISGSISSSIGNCTFLKVLDLSYSSLSGVIPASLGQLTRLQSLHLNNNKLTGNLPSSFQNLTSLETLDL  721 (1009)
Q Consensus       642 ~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L  721 (1009)
                      ..+.+++.+++.++ .+|..+.  +++++|+|++|+|++..+..|.++++|++|+|++|+++. +| .+..+++|++|+|
T Consensus        10 ~~~~~v~C~~~~L~-~iP~~lp--~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~L~~N~l~~-l~-~~~~l~~L~~L~L   84 (266)
T d1p9ag_          10 ASHLEVNCDKRNLT-ALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTK-LQ-VDGTLPVLGTLDL   84 (266)
T ss_dssp             TTCCEEECTTSCCS-SCCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCE-EE-CCSCCTTCCEEEC
T ss_pred             CCCeEEEccCCCCC-eeCcCcC--cCCCEEECcCCcCCCcCHHHhhccccccccccccccccc-cc-ccccccccccccc
Confidence            34445566666665 3444442  356666666666665555566666666666666666663 23 2456667777777


Q ss_pred             cCCcccccCchhhhhcCcCCcEEEccCCcccccCCcccCCCCCCCEEEccCCcCCCCCChhhhhhhhhhhccchhhhhhc
Q 036375          722 GNNRFSGNIPSLLGNGFVGLRILSLRSNAFSGEIPSKLSNLSSLQVLDLAENNLTGSIPGSVGDLKAMAHVQNIVKYLLF  801 (1009)
Q Consensus       722 ~~N~l~~~ip~~l~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~~~~~~~~~~~  801 (1009)
                      ++|+++ .+|..+. .+++|+.|++++|.+.+..+..+..+.++++|++++|.+++..+..+..++.+            
T Consensus        85 s~N~l~-~~~~~~~-~l~~L~~L~l~~~~~~~~~~~~~~~l~~l~~L~l~~n~l~~l~~~~~~~l~~l------------  150 (266)
T d1p9ag_          85 SHNQLQ-SLPLLGQ-TLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKL------------  150 (266)
T ss_dssp             CSSCCS-SCCCCTT-TCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTC------------
T ss_pred             cccccc-ccccccc-cccccccccccccccceeeccccccccccccccccccccceeccccccccccc------------
Confidence            777766 3444443 37777777777777776666667778888888888888887666666666655            


Q ss_pred             cccccceeeceEEEeecCCCCCCCCceeEEEccCCccCCCCCccccCcCCCCeEEccCCcccccCCCCccCCCCCCEEeC
Q 036375          802 GRYRGIYYEENLVINTKGSSKDTPRLFHFIDLSGNNLHGDFPTQLTKLVGLVVLNLSRNHIGGQIPENISGLHQLASLDL  881 (1009)
Q Consensus       802 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L  881 (1009)
                                                 +.+++++|++++..+..|..+++|++|+|++|+|+ .+|+.+..+++|+.|+|
T Consensus       151 ---------------------------~~l~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~L~-~lp~~~~~~~~L~~L~L  202 (266)
T d1p9ag_         151 ---------------------------EKLSLANNNLTELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFL  202 (266)
T ss_dssp             ---------------------------CEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCCCSEEEC
T ss_pred             ---------------------------hhcccccccccccCccccccccccceeecccCCCc-ccChhHCCCCCCCEEEe
Confidence                                       78888999998888888999999999999999999 78888889999999999


Q ss_pred             CCCcCCC
Q 036375          882 SSNNLSG  888 (1009)
Q Consensus       882 s~N~l~~  888 (1009)
                      ++|.+..
T Consensus       203 ~~Np~~C  209 (266)
T d1p9ag_         203 HGNPWLC  209 (266)
T ss_dssp             CSCCBCC
T ss_pred             cCCCCCC
Confidence            9998864

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=99.74  E-value=4e-16  Score=171.28  Aligned_cols=75  Identities=24%  Similarity=0.277  Sum_probs=54.7

Q ss_pred             eEEEccCCccCCCCCccccCcCCCCeEEccCCcccccCCCCccCCCCCCEEeCCCCcCCCCCcccccCCCCCCeEeCCCC
Q 036375          829 HFIDLSGNNLHGDFPTQLTKLVGLVVLNLSRNHIGGQIPENISGLHQLASLDLSSNNLSGGIPSSLSSLSFLGYINLSRN  908 (1009)
Q Consensus       829 ~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~ls~N  908 (1009)
                      ...+++.|.+.+.    ...+++|++|+|++|+|+ .+|+.   +++|+.|+|++|+|+ .+|..   +++|++|++++|
T Consensus       267 ~~~~~~~~~~~~~----~~~~~~L~~L~Ls~N~l~-~lp~~---~~~L~~L~L~~N~L~-~l~~~---~~~L~~L~L~~N  334 (353)
T d1jl5a_         267 YYLNASSNEIRSL----CDLPPSLEELNVSNNKLI-ELPAL---PPRLERLIASFNHLA-EVPEL---PQNLKQLHVEYN  334 (353)
T ss_dssp             CEEECCSSCCSEE----CCCCTTCCEEECCSSCCS-CCCCC---CTTCCEEECCSSCCS-CCCCC---CTTCCEEECCSS
T ss_pred             cccccccCccccc----cccCCCCCEEECCCCccC-ccccc---cCCCCEEECCCCcCC-ccccc---cCCCCEEECcCC
Confidence            4566676766543    234578899999999988 45643   568889999999998 56654   457889999999


Q ss_pred             cceecCCC
Q 036375          909 QLSGKIPF  916 (1009)
Q Consensus       909 ~l~g~ip~  916 (1009)
                      +|+ .+|.
T Consensus       335 ~L~-~lp~  341 (353)
T d1jl5a_         335 PLR-EFPD  341 (353)
T ss_dssp             CCS-SCCC
T ss_pred             cCC-CCCc
Confidence            986 5564

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=99.74  E-value=1.9e-15  Score=165.87  Aligned_cols=138  Identities=28%  Similarity=0.320  Sum_probs=69.0

Q ss_pred             CCccEEEccCCcCCCcCCchhhcCCCCccEEEccCCcccccCCcccccCCCCCeEEccCCcCCccCcCcccCCCCCCEEE
Q 036375          593 VEIELLDLSNNHFSGPIPQNISGSMPNLIFLSVSGNRLTGKIPGSIGEMQLLQVIDLSRNSISGSISSSIGNCTFLKVLD  672 (1009)
Q Consensus       593 ~~L~~L~Ls~n~l~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~  672 (1009)
                      +.++.+++++|... .++    ....++..+.+.++.+.....    ....+...++..+.+.+...    -.......+
T Consensus       204 ~~L~~l~l~~n~~~-~~~----~~~~~l~~~~~~~~~~~~~~~----~~~~l~~~~~~~~~~~~l~~----l~~~~~~~~  270 (353)
T d1jl5a_         204 PFLTTIYADNNLLK-TLP----DLPPSLEALNVRDNYLTDLPE----LPQSLTFLDVSENIFSGLSE----LPPNLYYLN  270 (353)
T ss_dssp             TTCCEEECCSSCCS-SCC----SCCTTCCEEECCSSCCSCCCC----CCTTCCEEECCSSCCSEESC----CCTTCCEEE
T ss_pred             cccccccccccccc-ccc----ccccccccccccccccccccc----cccccccccccccccccccc----ccchhcccc
Confidence            44555555555443 222    123445555555555442211    12344555555544432210    012344555


Q ss_pred             CCCCcCcccCCccccCCCCCCEEEccCccccCCCchhhcCCCCCCEEECcCCcccccCchhhhhcCcCCcEEEccCCccc
Q 036375          673 LSYSSLSGVIPASLGQLTRLQSLHLNNNKLTGNLPSSFQNLTSLETLDLGNNRFSGNIPSLLGNGFVGLRILSLRSNAFS  752 (1009)
Q Consensus       673 Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~ip~~l~~~l~~L~~L~L~~N~l~  752 (1009)
                      +..+.+.+.    ...+++|++|++++|+++ .+|..   +++|+.|+|++|+++ .+|..    +++|+.|++++|+++
T Consensus       271 ~~~~~~~~~----~~~~~~L~~L~Ls~N~l~-~lp~~---~~~L~~L~L~~N~L~-~l~~~----~~~L~~L~L~~N~L~  337 (353)
T d1jl5a_         271 ASSNEIRSL----CDLPPSLEELNVSNNKLI-ELPAL---PPRLERLIASFNHLA-EVPEL----PQNLKQLHVEYNPLR  337 (353)
T ss_dssp             CCSSCCSEE----CCCCTTCCEEECCSSCCS-CCCCC---CTTCCEEECCSSCCS-CCCCC----CTTCCEEECCSSCCS
T ss_pred             cccCccccc----cccCCCCCEEECCCCccC-ccccc---cCCCCEEECCCCcCC-ccccc----cCCCCEEECcCCcCC
Confidence            555555432    223456666666666666 34432   456666666666665 55542    456667777777665


Q ss_pred             ccCCc
Q 036375          753 GEIPS  757 (1009)
Q Consensus       753 ~~~p~  757 (1009)
                       .+|.
T Consensus       338 -~lp~  341 (353)
T d1jl5a_         338 -EFPD  341 (353)
T ss_dssp             -SCCC
T ss_pred             -CCCc
Confidence             4554

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.73  E-value=1.5e-17  Score=169.86  Aligned_cols=203  Identities=23%  Similarity=0.352  Sum_probs=114.8

Q ss_pred             EEccCCcccccCCcccccCCCCCeEEccCCcCCccCcCcccCCCCCCEEECCCCcCcccCCccccCCCCCCEEEccCccc
Q 036375          623 LSVSGNRLTGKIPGSIGEMQLLQVIDLSRNSISGSISSSIGNCTFLKVLDLSYSSLSGVIPASLGQLTRLQSLHLNNNKL  702 (1009)
Q Consensus       623 L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l  702 (1009)
                      ++++.+++++..  .+.++.+|+.|++.+|.++..  ..+..+++|++|++++|++++..|  +..+++|+++++++|.+
T Consensus        24 ~~l~~~~~~d~~--~~~~l~~L~~L~l~~~~i~~l--~~l~~l~~L~~L~ls~n~i~~~~~--l~~l~~l~~l~~~~n~~   97 (227)
T d1h6ua2          24 IAAGKSNVTDTV--TQADLDGITTLSAFGTGVTTI--EGVQYLNNLIGLELKDNQITDLAP--LKNLTKITELELSGNPL   97 (227)
T ss_dssp             HHTTCSSTTSEE--CHHHHHTCCEEECTTSCCCCC--TTGGGCTTCCEEECCSSCCCCCGG--GTTCCSCCEEECCSCCC
T ss_pred             HHhCCCCcCCcC--CHHHcCCcCEEECCCCCCCcc--hhHhcCCCCcEeecCCceeecccc--ccccccccccccccccc
Confidence            445555555433  334455666666666666533  235666666666666666654432  55556666666666655


Q ss_pred             cCCCchhhcCCCCCCEEECcCCcccccCchhhhhcCcCCcEEEccCCcccccCCcccCCCCCCCEEEccCCcCCCCCChh
Q 036375          703 TGNLPSSFQNLTSLETLDLGNNRFSGNIPSLLGNGFVGLRILSLRSNAFSGEIPSKLSNLSSLQVLDLAENNLTGSIPGS  782 (1009)
Q Consensus       703 ~~~~p~~~~~l~~L~~L~L~~N~l~~~ip~~l~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~  782 (1009)
                      +. + ..+..+++|+.+++++|...+. +                          .+...+.++.++++++.+....+  
T Consensus        98 ~~-i-~~l~~l~~L~~l~l~~~~~~~~-~--------------------------~~~~~~~~~~l~~~~~~~~~~~~--  146 (227)
T d1h6ua2          98 KN-V-SAIAGLQSIKTLDLTSTQITDV-T--------------------------PLAGLSNLQVLYLDLNQITNISP--  146 (227)
T ss_dssp             SC-C-GGGTTCTTCCEEECTTSCCCCC-G--------------------------GGTTCTTCCEEECCSSCCCCCGG--
T ss_pred             cc-c-cccccccccccccccccccccc-c--------------------------hhccccchhhhhchhhhhchhhh--
Confidence            52 2 2345555555555555554421 1                          13334444455555544432211  


Q ss_pred             hhhhhhhhhccchhhhhhccccccceeeceEEEeecCCCCCCCCceeEEEccCCccCCCCCccccCcCCCCeEEccCCcc
Q 036375          783 VGDLKAMAHVQNIVKYLLFGRYRGIYYEENLVINTKGSSKDTPRLFHFIDLSGNNLHGDFPTQLTKLVGLVVLNLSRNHI  862 (1009)
Q Consensus       783 ~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l  862 (1009)
                      +...+++                                       +.|++++|.+++..  .++++++|+.|+|++|++
T Consensus       147 ~~~~~~L---------------------------------------~~L~l~~n~~~~~~--~l~~l~~L~~L~Ls~n~l  185 (227)
T d1h6ua2         147 LAGLTNL---------------------------------------QYLSIGNAQVSDLT--PLANLSKLTTLKADDNKI  185 (227)
T ss_dssp             GGGCTTC---------------------------------------CEEECCSSCCCCCG--GGTTCTTCCEEECCSSCC
T ss_pred             hcccccc---------------------------------------ccccccccccccch--hhcccccceecccCCCcc
Confidence            2222222                                       45555555554322  266777788888888887


Q ss_pred             cccCCCCccCCCCCCEEeCCCCcCCCCCcccccCCCCCCeEeCCC
Q 036375          863 GGQIPENISGLHQLASLDLSSNNLSGGIPSSLSSLSFLGYINLSR  907 (1009)
Q Consensus       863 ~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~ls~  907 (1009)
                      ++..  .++++++|++|+|++|++++..  .++++++|++|++++
T Consensus       186 ~~l~--~l~~l~~L~~L~Ls~N~lt~i~--~l~~l~~L~~L~lsn  226 (227)
T d1h6ua2         186 SDIS--PLASLPNLIEVHLKNNQISDVS--PLANTSNLFIVTLTN  226 (227)
T ss_dssp             CCCG--GGGGCTTCCEEECTTSCCCBCG--GGTTCTTCCEEEEEE
T ss_pred             CCCh--hhcCCCCCCEEECcCCcCCCCc--ccccCCCCCEEEeeC
Confidence            7642  3777888888888888887543  377888888888763

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.72  E-value=2.1e-17  Score=168.90  Aligned_cols=168  Identities=23%  Similarity=0.352  Sum_probs=131.7

Q ss_pred             CccEEEccCCcCCCcCCchhhcCCCCccEEEccCCcccccCCcccccCCCCCeEEccCCcCCccCcCcccCCCCCCEEEC
Q 036375          594 EIELLDLSNNHFSGPIPQNISGSMPNLIFLSVSGNRLTGKIPGSIGEMQLLQVIDLSRNSISGSISSSIGNCTFLKVLDL  673 (1009)
Q Consensus       594 ~L~~L~Ls~n~l~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L  673 (1009)
                      ++..++++.+++++.++.   ..+.+|++|++.+|.++..  ..+..+++|++|++++|++++..|  +..+++|+++++
T Consensus        20 ~~~~~~l~~~~~~d~~~~---~~l~~L~~L~l~~~~i~~l--~~l~~l~~L~~L~ls~n~i~~~~~--l~~l~~l~~l~~   92 (227)
T d1h6ua2          20 NAIKIAAGKSNVTDTVTQ---ADLDGITTLSAFGTGVTTI--EGVQYLNNLIGLELKDNQITDLAP--LKNLTKITELEL   92 (227)
T ss_dssp             HHHHHHTTCSSTTSEECH---HHHHTCCEEECTTSCCCCC--TTGGGCTTCCEEECCSSCCCCCGG--GTTCCSCCEEEC
T ss_pred             HHHHHHhCCCCcCCcCCH---HHcCCcCEEECCCCCCCcc--hhHhcCCCCcEeecCCceeecccc--cccccccccccc
Confidence            344567888888876543   4467899999999999865  358999999999999999987654  899999999999


Q ss_pred             CCCcCcccCCccccCCCCCCEEEccCccccCCCchhhcCCCCCCEEECcCCcccccCchhhhhcCcCCcEEEccCCcccc
Q 036375          674 SYSSLSGVIPASLGQLTRLQSLHLNNNKLTGNLPSSFQNLTSLETLDLGNNRFSGNIPSLLGNGFVGLRILSLRSNAFSG  753 (1009)
Q Consensus       674 s~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~ip~~l~~~l~~L~~L~L~~N~l~~  753 (1009)
                      ++|.++..  ..+..+++|+.+++++|...+.  ..+...+.++.+.++++.+....+  +. ..++|+.|++++|.+.+
T Consensus        93 ~~n~~~~i--~~l~~l~~L~~l~l~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~--~~-~~~~L~~L~l~~n~~~~  165 (227)
T d1h6ua2          93 SGNPLKNV--SAIAGLQSIKTLDLTSTQITDV--TPLAGLSNLQVLYLDLNQITNISP--LA-GLTNLQYLSIGNAQVSD  165 (227)
T ss_dssp             CSCCCSCC--GGGTTCTTCCEEECTTSCCCCC--GGGTTCTTCCEEECCSSCCCCCGG--GG-GCTTCCEEECCSSCCCC
T ss_pred             cccccccc--cccccccccccccccccccccc--chhccccchhhhhchhhhhchhhh--hc-ccccccccccccccccc
Confidence            99999853  4588999999999999998754  346778899999999998864332  22 47788888888887764


Q ss_pred             cCCcccCCCCCCCEEEccCCcCCC
Q 036375          754 EIPSKLSNLSSLQVLDLAENNLTG  777 (1009)
Q Consensus       754 ~~p~~l~~l~~L~~L~Ls~N~l~~  777 (1009)
                      ..  .+.++++|+.|++++|++++
T Consensus       166 ~~--~l~~l~~L~~L~Ls~n~l~~  187 (227)
T d1h6ua2         166 LT--PLANLSKLTTLKADDNKISD  187 (227)
T ss_dssp             CG--GGTTCTTCCEEECCSSCCCC
T ss_pred             ch--hhcccccceecccCCCccCC
Confidence            32  36777777777777777664

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.70  E-value=3.4e-17  Score=169.40  Aligned_cols=51  Identities=16%  Similarity=0.064  Sum_probs=27.9

Q ss_pred             EccCCcccccCCCCccCCCCCCEEeCCCCcCCCCCcccccCCCCCCeEeCC
Q 036375          856 NLSRNHIGGQIPENISGLHQLASLDLSSNNLSGGIPSSLSSLSFLGYINLS  906 (1009)
Q Consensus       856 ~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~ls  906 (1009)
                      ++++|+++...+..|.++++|++||+++|+++...+..|.+++.|+++++.
T Consensus       183 ~l~~n~l~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~l~~~  233 (242)
T d1xwdc1         183 LSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYGLENLKKLRARSTY  233 (242)
T ss_dssp             CTTCTTCCCCCTTTTTTSCCCSEEECTTSCCCCCCSSSCTTCCEEESSSEE
T ss_pred             cccccccccccHHHhcCCCCCCEEECCCCcCCccCHHHHcCCcccccCcCC
Confidence            345555554444455666666666666666664444455555555555543

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.70  E-value=4.1e-17  Score=168.73  Aligned_cols=220  Identities=16%  Similarity=0.140  Sum_probs=152.9

Q ss_pred             cEEEccCCcccccCCcccccCCCCCeEEccCCcCCccCcCcccCCCCCCEEECCCCcCcccC-CccccCCCCCCEEEccC
Q 036375          621 IFLSVSGNRLTGKIPGSIGEMQLLQVIDLSRNSISGSISSSIGNCTFLKVLDLSYSSLSGVI-PASLGQLTRLQSLHLNN  699 (1009)
Q Consensus       621 ~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~-p~~~~~l~~L~~L~L~~  699 (1009)
                      +.++.++..++ .+|..+  .+++++|++++|+++...+..|.++++|++|++++|.+.+.+ +.+|..++.++++.+..
T Consensus        11 ~~i~c~~~~l~-~iP~~l--~~~l~~L~Ls~n~i~~l~~~~f~~l~~L~~L~ls~n~~~~~i~~~~f~~l~~l~~l~~~~   87 (242)
T d1xwdc1          11 RVFLCQESKVT-EIPSDL--PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEK   87 (242)
T ss_dssp             SEEEEESCSCS-SCCSCS--CSCCSEEEEESCCCCEECTTTTTTCTTCCEEEEESCTTCCEECSSSEESCTTCCEEEEEC
T ss_pred             CEEEEeCCCCC-CcCCCC--CCCCCEEECcCCcCCccChhHhhccchhhhhhhccccccceeeccccccccccccccccc
Confidence            56777777777 445443  247888888888888666667888888888888888887644 45678888888888754


Q ss_pred             -ccccCCCchhhcCCCCCCEEECcCCcccccCchhhhhcCcCCcEEEccCCcccccCCcccCCCC-CCCEEEccCCcCCC
Q 036375          700 -NKLTGNLPSSFQNLTSLETLDLGNNRFSGNIPSLLGNGFVGLRILSLRSNAFSGEIPSKLSNLS-SLQVLDLAENNLTG  777 (1009)
Q Consensus       700 -N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~ip~~l~~~l~~L~~L~L~~N~l~~~~p~~l~~l~-~L~~L~Ls~N~l~~  777 (1009)
                       |.+....+..|.++++|+++++++|.+....+......+..+..+...++.+....+..+..++ .++.|++++|+++.
T Consensus        88 ~n~l~~~~~~~~~~l~~L~~l~l~~~~l~~~~~~~~~~~l~~l~~~~~~n~~l~~i~~~~~~~~~~~l~~L~l~~n~l~~  167 (242)
T d1xwdc1          88 ANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQE  167 (242)
T ss_dssp             CTTCCEECTTSEECCTTCCEEEEESCCCCSCCCCTTTCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCCE
T ss_pred             cccccccccccccccccccccccchhhhcccccccccccccccccccccccccccccccccccccccceeeecccccccc
Confidence             6677677777888888888888888886332222222345555666677777655556666654 67788888888874


Q ss_pred             CCChhhhhhhhhhhccchhhhhhccccccceeeceEEEeecCCCCCCCCceeEEEccCCccCCCCCccccCcCCCCeEEc
Q 036375          778 SIPGSVGDLKAMAHVQNIVKYLLFGRYRGIYYEENLVINTKGSSKDTPRLFHFIDLSGNNLHGDFPTQLTKLVGLVVLNL  857 (1009)
Q Consensus       778 ~~p~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L  857 (1009)
                      ..+..+ +...+                                      .+.+++++|+++...+..|.++++|++|+|
T Consensus       168 i~~~~~-~~~~l--------------------------------------~~~~~l~~n~l~~l~~~~f~~l~~L~~L~L  208 (242)
T d1xwdc1         168 IHNCAF-NGTQL--------------------------------------DELNLSDNNNLEELPNDVFHGASGPVILDI  208 (242)
T ss_dssp             ECTTTT-TTCCE--------------------------------------EEEECTTCTTCCCCCTTTTTTSCCCSEEEC
T ss_pred             cccccc-cchhh--------------------------------------hccccccccccccccHHHhcCCCCCCEEEC
Confidence            433222 22222                                      144567778888655666888888888888


Q ss_pred             cCCcccccCCCCccCCCCCCEEeCC
Q 036375          858 SRNHIGGQIPENISGLHQLASLDLS  882 (1009)
Q Consensus       858 s~N~l~~~~p~~l~~l~~L~~L~Ls  882 (1009)
                      ++|+|+...+..|.++++|+.++++
T Consensus       209 s~N~l~~l~~~~~~~l~~L~~l~~~  233 (242)
T d1xwdc1         209 SRTRIHSLPSYGLENLKKLRARSTY  233 (242)
T ss_dssp             TTSCCCCCCSSSCTTCCEEESSSEE
T ss_pred             CCCcCCccCHHHHcCCcccccCcCC
Confidence            8888886666677777777776653

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.69  E-value=2.6e-17  Score=163.04  Aligned_cols=175  Identities=25%  Similarity=0.347  Sum_probs=144.8

Q ss_pred             CccEEEccCCcCCCcCCchhhcCCCCccEEEccCCcccc-cCCcccccCCCCCeEEccCCcCCccCcCcccCCCCCCEEE
Q 036375          594 EIELLDLSNNHFSGPIPQNISGSMPNLIFLSVSGNRLTG-KIPGSIGEMQLLQVIDLSRNSISGSISSSIGNCTFLKVLD  672 (1009)
Q Consensus       594 ~L~~L~Ls~n~l~~~ip~~~~~~l~~L~~L~Ls~n~l~~-~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~  672 (1009)
                      +.+.++.++++++ .+|..+   .+++++|+|++|+|++ ..+..|.++++|+.|++++|++.+..+..+..+++|++|+
T Consensus         9 ~~~~v~Cs~~~L~-~iP~~l---p~~l~~L~Ls~N~i~~~~~~~~f~~l~~L~~L~L~~N~i~~~~~~~~~~~~~L~~L~   84 (192)
T d1w8aa_           9 EGTTVDCTGRGLK-EIPRDI---PLHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQ   84 (192)
T ss_dssp             ETTEEECTTSCCS-SCCSCC---CTTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEE
T ss_pred             cCCEEEEeCCCcC-ccCCCC---CCCCCEEEeCCCCCcccccccccCCCceEeeeeccccccccccccccccccccceee
Confidence            4567889999988 788754   3689999999999986 4467789999999999999999999999999999999999


Q ss_pred             CCCCcCcccCCccccCCCCCCEEEccCccccCCCchhhcCCCCCCEEECcCCcccccCchhhhhcCcCCcEEEccCCccc
Q 036375          673 LSYSSLSGVIPASLGQLTRLQSLHLNNNKLTGNLPSSFQNLTSLETLDLGNNRFSGNIPSLLGNGFVGLRILSLRSNAFS  752 (1009)
Q Consensus       673 Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~ip~~l~~~l~~L~~L~L~~N~l~  752 (1009)
                      +++|++++..|.+|.++++|++|+|++|++++..|.+|..+++|++|+|++|++.+..+....  ...++.+.+..+.+.
T Consensus        85 Ls~N~l~~l~~~~F~~l~~L~~L~L~~N~l~~i~~~~f~~l~~L~~l~L~~N~~~~~~~~~~~--~~~l~~~~l~~~~~~  162 (192)
T d1w8aa_          85 LGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCNCHLAWF--AEWLRKKSLNGGAAR  162 (192)
T ss_dssp             CCSCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCSGGGHHH--HHHHHHHCCSGGGCB
T ss_pred             eccccccccCHHHHhCCCcccccccCCccccccCHHHhcCCcccccccccccccccccchHHH--hhhhhhhcccCCCeE
Confidence            999999998899999999999999999999988888999999999999999999865443332  234555667777777


Q ss_pred             ccCCcccCCCCCCCEEEccCCcCCC
Q 036375          753 GEIPSKLSNLSSLQVLDLAENNLTG  777 (1009)
Q Consensus       753 ~~~p~~l~~l~~L~~L~Ls~N~l~~  777 (1009)
                      ...|..   +..++.+|++.|.+.-
T Consensus       163 c~~p~~---l~~~~l~~L~~n~l~C  184 (192)
T d1w8aa_         163 CGAPSK---VRDVQIKDLPHSEFKC  184 (192)
T ss_dssp             BCSSTT---TTTSBGGGSCTTTCCC
T ss_pred             eCCChh---hcCCEeeecCHhhCcC
Confidence            666654   4456677888888763

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.68  E-value=1.3e-18  Score=199.24  Aligned_cols=112  Identities=22%  Similarity=0.214  Sum_probs=59.8

Q ss_pred             CCcEEECCCCCCCCCc-hhhhhcCCCCcEEEccCCcCcc----cCCcccCCCCCCCEEEcCCCCCCCCcc--ccccc-CC
Q 036375          224 SPAVLDLSLNHFNSLF-PNWLVNISTLVYVDLSDCDLYG----RIPIGFGELPNLQYLSLAGNNNLSGSC--SQLFR-GS  295 (1009)
Q Consensus       224 ~L~~L~L~~n~~~~~~-p~~l~~l~~L~~L~L~~n~~~~----~~p~~l~~l~~L~~L~L~~n~~~~~~~--~~~~~-~~  295 (1009)
                      +|++||+++|++++.. .+.+..++++++|+|++|+++.    .++..+..+++|++|+|++|++...+.  +...+ ..
T Consensus         3 ~l~~ld~~~~~i~~~~~~~l~~~l~~l~~L~L~~~~i~~~~~~~l~~~L~~~~~L~~LdLs~N~i~~~~~~~l~~~l~~~   82 (460)
T d1z7xw1           3 DIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQTP   82 (460)
T ss_dssp             EEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCST
T ss_pred             CCCEEEeeCCcCChHHHHHHHHhCCCCCEEEeCCCCCCHHHHHHHHHHHhcCCCCCEEECcCCcCChHHHHHHHHHHhcC
Confidence            3455556555555432 3345566777777777777653    234445667777777777764311000  01111 12


Q ss_pred             CCCccEEEccccccccc----CCccccCCCCCCEEEccCCcccc
Q 036375          296 WKKIQILNFASNKLHGK----LPSSVANMTSLTNFDLFDKKVEG  335 (1009)
Q Consensus       296 ~~~L~~L~l~~n~l~~~----~p~~l~~l~~L~~L~l~~n~~~~  335 (1009)
                      ..+|++|++++|.+++.    ++..+..+++|++|++++|.+..
T Consensus        83 ~~~L~~L~L~~n~it~~~~~~l~~~l~~~~~L~~L~L~~N~i~~  126 (460)
T d1z7xw1          83 SCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGD  126 (460)
T ss_dssp             TCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHH
T ss_pred             CCCCCEEECCCCCccccccccccchhhccccccccccccccchh
Confidence            23566666666655432    23345556666666666666553

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.68  E-value=5.4e-17  Score=160.64  Aligned_cols=156  Identities=23%  Similarity=0.254  Sum_probs=99.0

Q ss_pred             CEEECcCCcccccCchhhhhcCcCCcEEEccCCcccccC-CcccCCCCCCCEEEccCCcCCCCCChhhhhhhhhhhccch
Q 036375          717 ETLDLGNNRFSGNIPSLLGNGFVGLRILSLRSNAFSGEI-PSKLSNLSSLQVLDLAENNLTGSIPGSVGDLKAMAHVQNI  795 (1009)
Q Consensus       717 ~~L~L~~N~l~~~ip~~l~~~l~~L~~L~L~~N~l~~~~-p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~~~~~  795 (1009)
                      ++++.+++.++ .+|..+   .+++++|+|++|++++.+ +..|..+++|++|++++|++.+..+..+..++.|      
T Consensus        11 ~~v~Cs~~~L~-~iP~~l---p~~l~~L~Ls~N~i~~~~~~~~f~~l~~L~~L~L~~N~i~~~~~~~~~~~~~L------   80 (192)
T d1w8aa_          11 TTVDCTGRGLK-EIPRDI---PLHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHI------   80 (192)
T ss_dssp             TEEECTTSCCS-SCCSCC---CTTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTC------
T ss_pred             CEEEEeCCCcC-ccCCCC---CCCCCEEEeCCCCCcccccccccCCCceEeeeecccccccccccccccccccc------
Confidence            35666666665 566543   345666666666665433 3445666777777777777766666666665555      


Q ss_pred             hhhhhccccccceeeceEEEeecCCCCCCCCceeEEEccCCccCCCCCccccCcCCCCeEEccCCcccccCCCCccCCCC
Q 036375          796 VKYLLFGRYRGIYYEENLVINTKGSSKDTPRLFHFIDLSGNNLHGDFPTQLTKLVGLVVLNLSRNHIGGQIPENISGLHQ  875 (1009)
Q Consensus       796 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~  875 (1009)
                                                       +.|+|++|+|++..|..|.++++|++|+|++|+|++..|++|..+++
T Consensus        81 ---------------------------------~~L~Ls~N~l~~l~~~~F~~l~~L~~L~L~~N~l~~i~~~~f~~l~~  127 (192)
T d1w8aa_          81 ---------------------------------QELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNS  127 (192)
T ss_dssp             ---------------------------------CEEECCSCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTT
T ss_pred             ---------------------------------ceeeeccccccccCHHHHhCCCcccccccCCccccccCHHHhcCCcc
Confidence                                             66677777777666667777777777777777777777777777777


Q ss_pred             CCEEeCCCCcCCCCCcccccCCCCCCeEeCCCCcceecCCC
Q 036375          876 LASLDLSSNNLSGGIPSSLSSLSFLGYINLSRNQLSGKIPF  916 (1009)
Q Consensus       876 L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~ls~N~l~g~ip~  916 (1009)
                      |++|+|++|.+....+... -...++.+.+..|.+.+..|.
T Consensus       128 L~~l~L~~N~~~~~~~~~~-~~~~l~~~~l~~~~~~c~~p~  167 (192)
T d1w8aa_         128 LTSLNLASNPFNCNCHLAW-FAEWLRKKSLNGGAARCGAPS  167 (192)
T ss_dssp             CCEEECTTCCBCCSGGGHH-HHHHHHHHCCSGGGCBBCSST
T ss_pred             cccccccccccccccchHH-HhhhhhhhcccCCCeEeCCCh
Confidence            7777777777765432211 112345556666666665554

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.67  E-value=2.5e-18  Score=196.69  Aligned_cols=114  Identities=25%  Similarity=0.236  Sum_probs=61.0

Q ss_pred             CccEEEcccccccccC-CccccCCCCCCEEEccCCcccc----cCchhhhcccCCCEEEcCCCcCCCCCCcccccccccc
Q 036375          298 KIQILNFASNKLHGKL-PSSVANMTSLTNFDLFDKKVEG----GIPSSIARLCYLKEFDLSGNNLTGSLPEILQGTDLCV  372 (1009)
Q Consensus       298 ~L~~L~l~~n~l~~~~-p~~l~~l~~L~~L~l~~n~~~~----~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~  372 (1009)
                      +|++|+++++++++.. .+.+..++++++|+|++|.++.    .+...+..+++|++|++++|.++......+...    
T Consensus         3 ~l~~ld~~~~~i~~~~~~~l~~~l~~l~~L~L~~~~i~~~~~~~l~~~L~~~~~L~~LdLs~N~i~~~~~~~l~~~----   78 (460)
T d1z7xw1           3 DIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQG----   78 (460)
T ss_dssp             EEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHT----
T ss_pred             CCCEEEeeCCcCChHHHHHHHHhCCCCCEEEeCCCCCCHHHHHHHHHHHhcCCCCCEEECcCCcCChHHHHHHHHH----
Confidence            5777888887776532 3335566777778887777663    234445666777777777776542211111100    


Q ss_pred             CCCCCCCCCcEEECcCCcCccc----CChhhcCCCCCCEEeCcCCccc
Q 036375          373 SSNSPLPSLISMRLGNNHLKGK----LPEWLSQLENLVELTLSYNLLQ  416 (1009)
Q Consensus       373 ~~~~~l~~L~~L~L~~n~l~~~----~~~~l~~l~~L~~L~Ls~n~l~  416 (1009)
                       -.....+|++|++++|.+++.    ++..+..+++|++|++++|.+.
T Consensus        79 -l~~~~~~L~~L~L~~n~it~~~~~~l~~~l~~~~~L~~L~L~~N~i~  125 (460)
T d1z7xw1          79 -LQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLG  125 (460)
T ss_dssp             -TCSTTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCH
T ss_pred             -HhcCCCCCCEEECCCCCccccccccccchhhccccccccccccccch
Confidence             000123456666666555432    2333445555555555555544

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.66  E-value=4.1e-16  Score=156.57  Aligned_cols=180  Identities=27%  Similarity=0.412  Sum_probs=101.4

Q ss_pred             EccCCcCCccCcCcccCCCCCCEEECCCCcCcccCCccccCCCCCCEEEccCccccCCCchhhcCCCCCCEEECcCCccc
Q 036375          648 DLSRNSISGSISSSIGNCTFLKVLDLSYSSLSGVIPASLGQLTRLQSLHLNNNKLTGNLPSSFQNLTSLETLDLGNNRFS  727 (1009)
Q Consensus       648 ~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~  727 (1009)
                      .+..+.+++.++.  ..+.+|++|++++|+++...  .+..+++|++|++++|++++. + .+..+++|++|++++|+++
T Consensus        30 ~l~~~~~~~~~~~--~~L~~L~~L~l~~~~i~~l~--~l~~l~~L~~L~L~~n~i~~l-~-~~~~l~~L~~L~l~~n~i~  103 (210)
T d1h6ta2          30 NLKKKSVTDAVTQ--NELNSIDQIIANNSDIKSVQ--GIQYLPNVTKLFLNGNKLTDI-K-PLANLKNLGWLFLDENKVK  103 (210)
T ss_dssp             HTTCSCTTSEECH--HHHHTCCEEECTTSCCCCCT--TGGGCTTCCEEECCSSCCCCC-G-GGTTCTTCCEEECCSSCCC
T ss_pred             HhCcCccCCccCH--HHhcCccEEECcCCCCCCch--hHhhCCCCCEEeCCCccccCc-c-ccccCcccccccccccccc
Confidence            4444555444332  23455666666666665432  245556666666666665542 2 2445555555555555554


Q ss_pred             ccCchhhhhcCcCCcEEEccCCcccccCCcccCCCCCCCEEEccCCcCCCCCChhhhhhhhhhhccchhhhhhccccccc
Q 036375          728 GNIPSLLGNGFVGLRILSLRSNAFSGEIPSKLSNLSSLQVLDLAENNLTGSIPGSVGDLKAMAHVQNIVKYLLFGRYRGI  807 (1009)
Q Consensus       728 ~~ip~~l~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~~~~~~~~~~~~~~~~~  807 (1009)
                       .+|                          .+..+++|+.|++++|.+...  ..+..++.+                  
T Consensus       104 -~l~--------------------------~l~~l~~L~~L~l~~~~~~~~--~~l~~l~~l------------------  136 (210)
T d1h6ta2         104 -DLS--------------------------SLKDLKKLKSLSLEHNGISDI--NGLVHLPQL------------------  136 (210)
T ss_dssp             -CGG--------------------------GGTTCTTCCEEECTTSCCCCC--GGGGGCTTC------------------
T ss_pred             -ccc--------------------------ccccccccccccccccccccc--ccccccccc------------------
Confidence             233                          244444555555555544321  122222222                  


Q ss_pred             eeeceEEEeecCCCCCCCCceeEEEccCCccCCCCCccccCcCCCCeEEccCCcccccCCCCccCCCCCCEEeCCCCcCC
Q 036375          808 YYEENLVINTKGSSKDTPRLFHFIDLSGNNLHGDFPTQLTKLVGLVVLNLSRNHIGGQIPENISGLHQLASLDLSSNNLS  887 (1009)
Q Consensus       808 ~~~~~~~~~~~~~~~~~~~~l~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~  887 (1009)
                                           +.+++++|.+++  +..+..+++|+.+++++|++++..+  ++++++|+.|+|++|+++
T Consensus       137 ---------------------~~l~~~~n~l~~--~~~~~~l~~L~~l~l~~n~l~~i~~--l~~l~~L~~L~Ls~N~i~  191 (210)
T d1h6ta2         137 ---------------------ESLYLGNNKITD--ITVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHIS  191 (210)
T ss_dssp             ---------------------CEEECCSSCCCC--CGGGGGCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCC
T ss_pred             ---------------------cccccccccccc--ccccccccccccccccccccccccc--ccCCCCCCEEECCCCCCC
Confidence                                 455555555543  2345566777888888888876432  777888888888888887


Q ss_pred             CCCcccccCCCCCCeEeCCC
Q 036375          888 GGIPSSLSSLSFLGYINLSR  907 (1009)
Q Consensus       888 ~~ip~~l~~l~~L~~L~ls~  907 (1009)
                      . +| .++++++|++|++++
T Consensus       192 ~-l~-~l~~l~~L~~L~Ls~  209 (210)
T d1h6ta2         192 D-LR-ALAGLKNLDVLELFS  209 (210)
T ss_dssp             B-CG-GGTTCTTCSEEEEEE
T ss_pred             C-Ch-hhcCCCCCCEEEccC
Confidence            4 44 577888888888763

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.64  E-value=9.9e-16  Score=153.71  Aligned_cols=126  Identities=28%  Similarity=0.363  Sum_probs=75.5

Q ss_pred             cCCCCCeEEccCCcCCccCcCcccCCCCCCEEECCCCcCcccCCccccCCCCCCEEEccCccccCCCchhhcCCCCCCEE
Q 036375          640 EMQLLQVIDLSRNSISGSISSSIGNCTFLKVLDLSYSSLSGVIPASLGQLTRLQSLHLNNNKLTGNLPSSFQNLTSLETL  719 (1009)
Q Consensus       640 ~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L  719 (1009)
                      .+.+|+.|++++|.++...  .+..+++|++|++++|++++..  .++.+++|++|++++|++++ +| .+..+++|+.|
T Consensus        44 ~L~~L~~L~l~~~~i~~l~--~l~~l~~L~~L~L~~n~i~~l~--~~~~l~~L~~L~l~~n~i~~-l~-~l~~l~~L~~L  117 (210)
T d1h6ta2          44 ELNSIDQIIANNSDIKSVQ--GIQYLPNVTKLFLNGNKLTDIK--PLANLKNLGWLFLDENKVKD-LS-SLKDLKKLKSL  117 (210)
T ss_dssp             HHHTCCEEECTTSCCCCCT--TGGGCTTCCEEECCSSCCCCCG--GGTTCTTCCEEECCSSCCCC-GG-GGTTCTTCCEE
T ss_pred             HhcCccEEECcCCCCCCch--hHhhCCCCCEEeCCCccccCcc--ccccCccccccccccccccc-cc-ccccccccccc
Confidence            3456666677766666432  3666777777777777776542  25667777777777777764 33 46667777777


Q ss_pred             ECcCCcccccCchhhhhcCcCCcEEEccCCcccccCCcccCCCCCCCEEEccCCcCC
Q 036375          720 DLGNNRFSGNIPSLLGNGFVGLRILSLRSNAFSGEIPSKLSNLSSLQVLDLAENNLT  776 (1009)
Q Consensus       720 ~L~~N~l~~~ip~~l~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~  776 (1009)
                      ++++|.+. .++. +. .++.++.+++++|.+++  +..+..+++|+++++++|+++
T Consensus       118 ~l~~~~~~-~~~~-l~-~l~~l~~l~~~~n~l~~--~~~~~~l~~L~~l~l~~n~l~  169 (210)
T d1h6ta2         118 SLEHNGIS-DING-LV-HLPQLESLYLGNNKITD--ITVLSRLTKLDTLSLEDNQIS  169 (210)
T ss_dssp             ECTTSCCC-CCGG-GG-GCTTCCEEECCSSCCCC--CGGGGGCTTCSEEECCSSCCC
T ss_pred             cccccccc-cccc-cc-ccccccccccccccccc--ccccccccccccccccccccc
Confidence            77777665 3332 22 35666666666666542  223444555555555555554

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.62  E-value=1.9e-15  Score=150.34  Aligned_cols=54  Identities=35%  Similarity=0.468  Sum_probs=29.2

Q ss_pred             ccCcCCCCeEEccCCcccccCCCCccCCCCCCEEeCCCCcCCCCCcccccCCCCCCeE
Q 036375          846 LTKLVGLVVLNLSRNHIGGQIPENISGLHQLASLDLSSNNLSGGIPSSLSSLSFLGYI  903 (1009)
Q Consensus       846 l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L  903 (1009)
                      +..+++|+.|++++|++++..  .++++++|++|++++|++++ +| .++++++|++|
T Consensus       146 l~~~~~L~~L~l~~n~l~~l~--~l~~l~~L~~L~ls~N~i~~-i~-~l~~L~~L~~L  199 (199)
T d2omxa2         146 LSGLTSLQQLNFSSNQVTDLK--PLANLTTLERLDISSNKVSD-IS-VLAKLTNLESL  199 (199)
T ss_dssp             GTTCTTCSEEECCSSCCCCCG--GGTTCTTCCEEECCSSCCCC-CG-GGGGCTTCSEE
T ss_pred             ccccccccccccccccccCCc--cccCCCCCCEEECCCCCCCC-Cc-cccCCCCCCcC
Confidence            444455555555555555432  25556666666666666654 22 35555555543

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.60  E-value=5.4e-15  Score=146.92  Aligned_cols=174  Identities=25%  Similarity=0.395  Sum_probs=130.0

Q ss_pred             EEccCCcCCCcCCchhhcCCCCccEEEccCCcccccCCcccccCCCCCeEEccCCcCCccCcCcccCCCCCCEEECCCCc
Q 036375          598 LDLSNNHFSGPIPQNISGSMPNLIFLSVSGNRLTGKIPGSIGEMQLLQVIDLSRNSISGSISSSIGNCTFLKVLDLSYSS  677 (1009)
Q Consensus       598 L~Ls~n~l~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~  677 (1009)
                      ..++.+.+++.++.   ..++++++|++++|.++..  ..++.+++|++|++++|++++..|  ++++++|++|++++|.
T Consensus        23 ~~l~~~~~~~~~~~---~~l~~l~~L~l~~~~i~~l--~~l~~l~nL~~L~Ls~N~l~~~~~--l~~l~~L~~L~l~~n~   95 (199)
T d2omxa2          23 TVLGKTNVTDTVSQ---TDLDQVTTLQADRLGIKSI--DGVEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQ   95 (199)
T ss_dssp             HHTTCSSTTSEECH---HHHTTCCEEECTTSCCCCC--TTGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSC
T ss_pred             HHhCCCCCCCccCH---HHhcCCCEEECCCCCCCCc--cccccCCCcCcCccccccccCccc--ccCCcccccccccccc
Confidence            34555555554443   2356788888888887753  347778889999999998886543  8888899999999988


Q ss_pred             CcccCCccccCCCCCCEEEccCccccCCCchhhcCCCCCCEEECcCCcccccCchhhhhcCcCCcEEEccCCcccccCCc
Q 036375          678 LSGVIPASLGQLTRLQSLHLNNNKLTGNLPSSFQNLTSLETLDLGNNRFSGNIPSLLGNGFVGLRILSLRSNAFSGEIPS  757 (1009)
Q Consensus       678 l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~ip~~l~~~l~~L~~L~L~~N~l~~~~p~  757 (1009)
                      +... + .+++++.|+.|++++|.....  ..+..+++|+.|++++|++. .+|. +. .+++|+.|++.+|++++. + 
T Consensus        96 ~~~~-~-~l~~l~~L~~L~l~~~~~~~~--~~~~~l~~L~~L~l~~n~l~-~~~~-l~-~~~~L~~L~l~~n~l~~l-~-  166 (199)
T d2omxa2          96 IADI-T-PLANLTNLTGLTLFNNQITDI--DPLKNLTNLNRLELSSNTIS-DISA-LS-GLTSLQQLNFSSNQVTDL-K-  166 (199)
T ss_dssp             CCCC-G-GGTTCTTCSEEECCSSCCCCC--GGGTTCTTCSEEECCSSCCC-CCGG-GT-TCTTCSEEECCSSCCCCC-G-
T ss_pred             cccc-c-ccccccccccccccccccccc--cccchhhhhHHhhhhhhhhc-cccc-cc-ccccccccccccccccCC-c-
Confidence            8754 3 478888999999988888753  35778889999999999886 4553 33 488999999999988753 3 


Q ss_pred             ccCCCCCCCEEEccCCcCCCCCChhhhhhhhh
Q 036375          758 KLSNLSSLQVLDLAENNLTGSIPGSVGDLKAM  789 (1009)
Q Consensus       758 ~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L  789 (1009)
                      .+.++++|++|++++|++++ +| .++.+++|
T Consensus       167 ~l~~l~~L~~L~ls~N~i~~-i~-~l~~L~~L  196 (199)
T d2omxa2         167 PLANLTTLERLDISSNKVSD-IS-VLAKLTNL  196 (199)
T ss_dssp             GGTTCTTCCEEECCSSCCCC-CG-GGGGCTTC
T ss_pred             cccCCCCCCEEECCCCCCCC-Cc-cccCCCCC
Confidence            37888999999999999875 33 46666665

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.55  E-value=8.5e-16  Score=162.10  Aligned_cols=213  Identities=18%  Similarity=0.160  Sum_probs=99.7

Q ss_pred             CCCcEEECCCCCCCCCc-hhhhhcCCCCcEEEccCCcCcccCCcccCCCCCCCEEEcCCCCCCCCcccccccCCCCCccE
Q 036375          223 TSPAVLDLSLNHFNSLF-PNWLVNISTLVYVDLSDCDLYGRIPIGFGELPNLQYLSLAGNNNLSGSCSQLFRGSWKKIQI  301 (1009)
Q Consensus       223 ~~L~~L~L~~n~~~~~~-p~~l~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~~~~~L~~  301 (1009)
                      .+|++||++++.++... +..+..+++|++|++++|.+.+..+..++++++|++|++++|..............+++|++
T Consensus        46 ~~L~~LdLs~~~i~~~~l~~l~~~c~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~Ls~c~~itd~~l~~l~~~~~~L~~  125 (284)
T d2astb2          46 FRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDE  125 (284)
T ss_dssp             BCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCE
T ss_pred             CCCCEEECCCCccCHHHHHHHHHhCCCcccccccccCCCcHHHHHHhcCCCCcCccccccccccccccchhhHHHHhccc
Confidence            34444454444443321 22334455555555555555444444455555555555555432222222223334455555


Q ss_pred             EEccccc-ccc-cCCcccc-CCCCCCEEEccCCc--cccc-CchhhhcccCCCEEEcCCCc-CCCCCCccccccccccCC
Q 036375          302 LNFASNK-LHG-KLPSSVA-NMTSLTNFDLFDKK--VEGG-IPSSIARLCYLKEFDLSGNN-LTGSLPEILQGTDLCVSS  374 (1009)
Q Consensus       302 L~l~~n~-l~~-~~p~~l~-~l~~L~~L~l~~n~--~~~~-~~~~l~~l~~L~~L~l~~n~-l~~~~~~~~~~~~~~~~~  374 (1009)
                      |++++|. ++. .+...+. ..++|+.|+++++.  ++.. +.....++++|++|++++|. +++.....+.        
T Consensus       126 L~ls~c~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~i~~~~l~~l~~~~~~L~~L~L~~~~~itd~~~~~l~--------  197 (284)
T d2astb2         126 LNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFF--------  197 (284)
T ss_dssp             EECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGG--------
T ss_pred             cccccccccccccchhhhcccccccchhhhcccccccccccccccccccccccccccccccCCCchhhhhhc--------
Confidence            5555542 221 1111122 23456666665542  2211 22223455666666666653 4444444333        


Q ss_pred             CCCCCCCcEEECcCC-cCcccCChhhcCCCCCCEEeCcCCcccc-cCCCCCCCCCCCcEEeCCCCcCCCCCCcccCC
Q 036375          375 NSPLPSLISMRLGNN-HLKGKLPEWLSQLENLVELTLSYNLLQG-PIPASLGNLKNLTKLNLPGNQLNGTLPETLGS  449 (1009)
Q Consensus       375 ~~~l~~L~~L~L~~n-~l~~~~~~~l~~l~~L~~L~Ls~n~l~~-~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~  449 (1009)
                        .+++|++|++++| .+++.....++++++|++|+++++ ++. .++.....+++|+   +..+.++...++.+++
T Consensus       198 --~~~~L~~L~L~~C~~i~~~~l~~L~~~~~L~~L~l~~~-~~d~~l~~l~~~lp~L~---i~~~~ls~~~~~~~~~  268 (284)
T d2astb2         198 --QLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI-VPDGTLQLLKEALPHLQ---INCSHFTTIARPTIGN  268 (284)
T ss_dssp             --GCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS-SCTTCHHHHHHHSTTSE---ESCCCSCCTTCSSCSS
T ss_pred             --ccCcCCEEECCCCCCCChHHHHHHhcCCCCCEEeeeCC-CCHHHHHHHHHhCcccc---ccCccCCCCCCCccCc
Confidence              4566666666664 355444455667777777777766 221 1111112344443   4555666554444443

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.55  E-value=5.5e-15  Score=155.80  Aligned_cols=183  Identities=19%  Similarity=0.172  Sum_probs=91.2

Q ss_pred             CCCccEEEcCCCcCCCCCCCCCCCCCCCCcEEECCCCCCCCCchhhhhcCCCCcEEEccCCc-Cccc-CCcccCCCCCCC
Q 036375          197 LPNLTELHLSVCGLTGSITSITPVNLTSPAVLDLSLNHFNSLFPNWLVNISTLVYVDLSDCD-LYGR-IPIGFGELPNLQ  274 (1009)
Q Consensus       197 l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~L~~n~-~~~~-~p~~l~~l~~L~  274 (1009)
                      ..+|++||+++|.+........+..+++|++|+++++.+++..+..++.+++|++|++++|. +++. +..-...+++|+
T Consensus        45 ~~~L~~LdLs~~~i~~~~l~~l~~~c~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~Ls~c~~itd~~l~~l~~~~~~L~  124 (284)
T d2astb2          45 PFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLD  124 (284)
T ss_dssp             CBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCC
T ss_pred             CCCCCEEECCCCccCHHHHHHHHHhCCCcccccccccCCCcHHHHHHhcCCCCcCccccccccccccccchhhHHHHhcc
Confidence            34566666666655443333333555666666666666655555556666666666666653 3211 111123456666


Q ss_pred             EEEcCCCCCCCCccccccc-CCCCCccEEEccccc--cccc-CCccccCCCCCCEEEccCCc-ccccCchhhhcccCCCE
Q 036375          275 YLSLAGNNNLSGSCSQLFR-GSWKKIQILNFASNK--LHGK-LPSSVANMTSLTNFDLFDKK-VEGGIPSSIARLCYLKE  349 (1009)
Q Consensus       275 ~L~L~~n~~~~~~~~~~~~-~~~~~L~~L~l~~n~--l~~~-~p~~l~~l~~L~~L~l~~n~-~~~~~~~~l~~l~~L~~  349 (1009)
                      +|++++|............ ..+++|+.|+++++.  ++.. +.....++++|++|++++|. +++..+..+.++++|++
T Consensus       125 ~L~ls~c~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~i~~~~l~~l~~~~~~L~~L~L~~~~~itd~~~~~l~~~~~L~~  204 (284)
T d2astb2         125 ELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQH  204 (284)
T ss_dssp             EEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCE
T ss_pred             ccccccccccccccchhhhcccccccchhhhcccccccccccccccccccccccccccccccCCCchhhhhhcccCcCCE
Confidence            6666655322222222222 223556666665542  2211 22223345666666666543 44445555566666666


Q ss_pred             EEcCCC-cCCCCCCccccccccccCCCCCCCCCcEEECcCC
Q 036375          350 FDLSGN-NLTGSLPEILQGTDLCVSSNSPLPSLISMRLGNN  389 (1009)
Q Consensus       350 L~l~~n-~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n  389 (1009)
                      |++++| .+++.....+.          .+++|++|+++++
T Consensus       205 L~L~~C~~i~~~~l~~L~----------~~~~L~~L~l~~~  235 (284)
T d2astb2         205 LSLSRCYDIIPETLLELG----------EIPTLKTLQVFGI  235 (284)
T ss_dssp             EECTTCTTCCGGGGGGGG----------GCTTCCEEECTTS
T ss_pred             EECCCCCCCChHHHHHHh----------cCCCCCEEeeeCC
Confidence            666664 33333333333          4556666666655

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=99.45  E-value=9.2e-15  Score=159.40  Aligned_cols=84  Identities=19%  Similarity=0.237  Sum_probs=54.5

Q ss_pred             eEEEccCCccCCC----CCccccCcCCCCeEEccCCcccccCCC----CccC--CCCCCEEeCCCCcCCCC----Ccccc
Q 036375          829 HFIDLSGNNLHGD----FPTQLTKLVGLVVLNLSRNHIGGQIPE----NISG--LHQLASLDLSSNNLSGG----IPSSL  894 (1009)
Q Consensus       829 ~~L~Ls~N~l~~~----~p~~l~~l~~L~~L~Ls~N~l~~~~p~----~l~~--l~~L~~L~Ls~N~l~~~----ip~~l  894 (1009)
                      +.|+|++|.++..    +...+..+++|++|+|++|.|++....    .+..  .+.|++||+++|+++..    +...+
T Consensus       218 ~~L~Ls~N~i~~~g~~~L~~~l~~~~~L~~L~Ls~n~i~~~g~~~l~~~l~~~~~~~L~~L~ls~N~i~~~~~~~l~~~l  297 (344)
T d2ca6a1         218 KVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVI  297 (344)
T ss_dssp             CEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHH
T ss_pred             cccccccccccccccccccccccccccchhhhhhcCccCchhhHHHHHHhhhccCCCCCEEECCCCcCChHHHHHHHHHH
Confidence            5666766666532    344566777888888888887754222    2222  35688888888887643    23334


Q ss_pred             c-CCCCCCeEeCCCCccee
Q 036375          895 S-SLSFLGYINLSRNQLSG  912 (1009)
Q Consensus       895 ~-~l~~L~~L~ls~N~l~g  912 (1009)
                      . +.+.|++|++++|++..
T Consensus       298 ~~~~~~L~~L~l~~N~~~~  316 (344)
T d2ca6a1         298 DEKMPDLLFLELNGNRFSE  316 (344)
T ss_dssp             HHHCTTCCEEECTTSBSCT
T ss_pred             HccCCCCCEEECCCCcCCC
Confidence            2 56788888888888753

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=99.41  E-value=3.3e-14  Score=154.94  Aligned_cols=233  Identities=21%  Similarity=0.242  Sum_probs=131.9

Q ss_pred             CCCccEEEccCCccccc----CCcccccCCCCCeEEccCCcCCcc----------CcCcccCCCCCCEEECCCCcCcccC
Q 036375          617 MPNLIFLSVSGNRLTGK----IPGSIGEMQLLQVIDLSRNSISGS----------ISSSIGNCTFLKVLDLSYSSLSGVI  682 (1009)
Q Consensus       617 l~~L~~L~Ls~n~l~~~----~~~~~~~l~~L~~L~Ls~N~l~~~----------~p~~l~~l~~L~~L~Ls~N~l~~~~  682 (1009)
                      ...+++|++++|.+...    +...+...++|+.++++++.....          +...+..+++|+.|++++|.++...
T Consensus        30 ~~~l~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~l~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~  109 (344)
T d2ca6a1          30 DDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTA  109 (344)
T ss_dssp             CSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCCCTTT
T ss_pred             CCCCCEEECcCCcCCHHHHHHHHHHHHhCCCCCEEECCCCcccccccccchHHHHHHHHHhhCCCccccccccccccccc
Confidence            45566666666655432    122334456666666665543211          1122445666777777777665432


Q ss_pred             ----CccccCCCCCCEEEccCccccCCCch-------------hhcCCCCCCEEECcCCcccccCc----hhhhhcCcCC
Q 036375          683 ----PASLGQLTRLQSLHLNNNKLTGNLPS-------------SFQNLTSLETLDLGNNRFSGNIP----SLLGNGFVGL  741 (1009)
Q Consensus       683 ----p~~~~~l~~L~~L~L~~N~l~~~~p~-------------~~~~l~~L~~L~L~~N~l~~~ip----~~l~~~l~~L  741 (1009)
                          ...+...++|++|++++|.+......             .....+.|+.+++++|.+....-    ..+. ..+.|
T Consensus       110 ~~~l~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~~~~~~~~~~L~~l~l~~n~i~~~~~~~l~~~l~-~~~~L  188 (344)
T d2ca6a1         110 QEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQ-SHRLL  188 (344)
T ss_dssp             HHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHH-HCTTC
T ss_pred             ccchhhhhcccccchheecccccccccccccccccccccccccccccCcccceeecccccccccccccccchhh-hhhhh
Confidence                22334456677777777765421100             11345677777777777653222    2222 36677


Q ss_pred             cEEEccCCccccc-----CCcccCCCCCCCEEEccCCcCCCCCChhh----hhhhhhhhccchhhhhhccccccceeece
Q 036375          742 RILSLRSNAFSGE-----IPSKLSNLSSLQVLDLAENNLTGSIPGSV----GDLKAMAHVQNIVKYLLFGRYRGIYYEEN  812 (1009)
Q Consensus       742 ~~L~L~~N~l~~~-----~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~----~~l~~L~~~~~~~~~~~~~~~~~~~~~~~  812 (1009)
                      +.|++++|.+...     +...+..+++|+.|++++|.++......+    ..++                         
T Consensus       189 ~~L~L~~n~i~~~g~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~~L~~~l~~~~-------------------------  243 (344)
T d2ca6a1         189 HTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWP-------------------------  243 (344)
T ss_dssp             CEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCT-------------------------
T ss_pred             cccccccccccccccccchhhhhcchhhhcccccccccccccccccccccccccc-------------------------
Confidence            7777777776532     23446667778888888887653211111    1111                         


Q ss_pred             EEEeecCCCCCCCCceeEEEccCCccCCCCCcc----ccC--cCCCCeEEccCCccccc----CCCCcc-CCCCCCEEeC
Q 036375          813 LVINTKGSSKDTPRLFHFIDLSGNNLHGDFPTQ----LTK--LVGLVVLNLSRNHIGGQ----IPENIS-GLHQLASLDL  881 (1009)
Q Consensus       813 ~~~~~~~~~~~~~~~l~~L~Ls~N~l~~~~p~~----l~~--l~~L~~L~Ls~N~l~~~----~p~~l~-~l~~L~~L~L  881 (1009)
                                    .+++|+|++|.|++.-...    +..  ...|++||+++|+++..    +...+. +.++|+.|+|
T Consensus       244 --------------~L~~L~Ls~n~i~~~g~~~l~~~l~~~~~~~L~~L~ls~N~i~~~~~~~l~~~l~~~~~~L~~L~l  309 (344)
T d2ca6a1         244 --------------NLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLEL  309 (344)
T ss_dssp             --------------TCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEEC
T ss_pred             --------------cchhhhhhcCccCchhhHHHHHHhhhccCCCCCEEECCCCcCChHHHHHHHHHHHccCCCCCEEEC
Confidence                          2377788888877643333    322  35688899999988753    223332 5678999999


Q ss_pred             CCCcCCCC
Q 036375          882 SSNNLSGG  889 (1009)
Q Consensus       882 s~N~l~~~  889 (1009)
                      ++|++...
T Consensus       310 ~~N~~~~~  317 (344)
T d2ca6a1         310 NGNRFSEE  317 (344)
T ss_dssp             TTSBSCTT
T ss_pred             CCCcCCCc
Confidence            99998753

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.39  E-value=5.5e-13  Score=126.51  Aligned_cols=109  Identities=20%  Similarity=0.136  Sum_probs=59.7

Q ss_pred             CCCCccEEEccCCcccccCCcccccCCCCCeEEccCCcCCccCcCcccCCCCCCEEECCCCcCcccCCccccCCCCCCEE
Q 036375          616 SMPNLIFLSVSGNRLTGKIPGSIGEMQLLQVIDLSRNSISGSISSSIGNCTFLKVLDLSYSSLSGVIPASLGQLTRLQSL  695 (1009)
Q Consensus       616 ~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L  695 (1009)
                      ++..+++|+|++|+++.+ +..+..+++|+.|++++|+++..  +.+..+++|++|++++|+++...+..+..+++|+.|
T Consensus        16 n~~~lr~L~L~~n~I~~i-~~~~~~l~~L~~L~Ls~N~i~~l--~~~~~l~~L~~L~ls~N~i~~l~~~~~~~l~~L~~L   92 (162)
T d1a9na_          16 NAVRDRELDLRGYKIPVI-ENLGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTEL   92 (162)
T ss_dssp             CTTSCEEEECTTSCCCSC-CCGGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCEE
T ss_pred             CcCcCcEEECCCCCCCcc-CccccccccCCEEECCCCCCCcc--CCcccCcchhhhhcccccccCCCccccccccccccc
Confidence            344555666666665543 33445556666666666666533  235556666666666666665444444555666666


Q ss_pred             EccCccccCCCc-hhhcCCCCCCEEECcCCccc
Q 036375          696 HLNNNKLTGNLP-SSFQNLTSLETLDLGNNRFS  727 (1009)
Q Consensus       696 ~L~~N~l~~~~p-~~~~~l~~L~~L~L~~N~l~  727 (1009)
                      ++++|+++.... ..+..+++|++|++++|+++
T Consensus        93 ~L~~N~i~~~~~l~~l~~l~~L~~L~l~~N~i~  125 (162)
T d1a9na_          93 ILTNNSLVELGDLDPLASLKSLTYLCILRNPVT  125 (162)
T ss_dssp             ECCSCCCCCGGGGGGGGGCTTCCEEECCSSGGG
T ss_pred             eeccccccccccccccccccccchhhcCCCccc
Confidence            666666553211 23555555666666666554

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.38  E-value=6.7e-13  Score=119.49  Aligned_cols=81  Identities=32%  Similarity=0.371  Sum_probs=48.8

Q ss_pred             eEEEccCCccCCCCCccccCcCCCCeEEccCCcccccCCCCccCCCCCCEEeCCCCcCCCCC-cccccCCCCCCeEeCCC
Q 036375          829 HFIDLSGNNLHGDFPTQLTKLVGLVVLNLSRNHIGGQIPENISGLHQLASLDLSSNNLSGGI-PSSLSSLSFLGYINLSR  907 (1009)
Q Consensus       829 ~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~i-p~~l~~l~~L~~L~ls~  907 (1009)
                      ++||+++|+|+ .+|+.++.+++|+.|++++|+|++. | .++++++|++|++++|+++... +..+..+++|++|++++
T Consensus        23 ~~L~ls~N~l~-~lp~~~~~l~~L~~L~l~~N~i~~l-~-~~~~l~~L~~L~l~~N~i~~~~~~~~l~~~~~L~~L~l~~   99 (124)
T d1dcea3          23 THLDLSHNRLR-ALPPALAALRCLEVLQASDNALENV-D-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQG   99 (124)
T ss_dssp             CEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCCC-G-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTT
T ss_pred             CEEECCCCccC-cchhhhhhhhccccccccccccccc-C-ccccccccCeEECCCCccCCCCCchhhcCCCCCCEEECCC
Confidence            55566666665 3455566666666666666666643 2 3666666666666666666432 24556666666666666


Q ss_pred             Cccee
Q 036375          908 NQLSG  912 (1009)
Q Consensus       908 N~l~g  912 (1009)
                      |+++.
T Consensus       100 N~i~~  104 (124)
T d1dcea3         100 NSLCQ  104 (124)
T ss_dssp             SGGGG
T ss_pred             CcCCc
Confidence            66654

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.38  E-value=1.9e-12  Score=116.49  Aligned_cols=118  Identities=25%  Similarity=0.333  Sum_probs=64.3

Q ss_pred             EEEccCCcccccCCcccccCCCCCeEEccCCcCCccCcCcccCCCCCCEEECCCCcCcccCCccccCCCCCCEEEccCcc
Q 036375          622 FLSVSGNRLTGKIPGSIGEMQLLQVIDLSRNSISGSISSSIGNCTFLKVLDLSYSSLSGVIPASLGQLTRLQSLHLNNNK  701 (1009)
Q Consensus       622 ~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~  701 (1009)
                      +|++++|+++.. + .+..+++|++|++++|+++ .+|..++.+++|+.|++++|++++. | .+..+++|++|++++|+
T Consensus         2 ~L~Ls~n~l~~l-~-~l~~l~~L~~L~ls~N~l~-~lp~~~~~l~~L~~L~l~~N~i~~l-~-~~~~l~~L~~L~l~~N~   76 (124)
T d1dcea3           2 VLHLAHKDLTVL-C-HLEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALENV-D-GVANLPRLQELLLCNNR   76 (124)
T ss_dssp             EEECTTSCCSSC-C-CGGGGTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCCC-G-GGTTCSSCCEEECCSSC
T ss_pred             EEEcCCCCCCCC-c-ccccCCCCCEEECCCCccC-cchhhhhhhhccccccccccccccc-C-ccccccccCeEECCCCc
Confidence            455555555422 2 2555666666666666665 3444566666666666666666643 2 35666666666666666


Q ss_pred             ccCCC-chhhcCCCCCCEEECcCCccccc--CchhhhhcCcCCcEE
Q 036375          702 LTGNL-PSSFQNLTSLETLDLGNNRFSGN--IPSLLGNGFVGLRIL  744 (1009)
Q Consensus       702 l~~~~-p~~~~~l~~L~~L~L~~N~l~~~--ip~~l~~~l~~L~~L  744 (1009)
                      ++... ...+..+++|++|++++|++++.  .+..+...+++|+.+
T Consensus        77 i~~~~~~~~l~~~~~L~~L~l~~N~i~~~~~~~~~l~~~lp~L~~L  122 (124)
T d1dcea3          77 LQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSI  122 (124)
T ss_dssp             CCSSSTTGGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCSEE
T ss_pred             cCCCCCchhhcCCCCCCEEECCCCcCCcCccHHHHHHHHCcCcceE
Confidence            65332 13456666666666666666521  223333335555443

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.38  E-value=4.8e-13  Score=126.90  Aligned_cols=127  Identities=20%  Similarity=0.219  Sum_probs=91.7

Q ss_pred             ccccCCCCCeEEccCCcCCccCcCcccCCCCCCEEECCCCcCcccCCccccCCCCCCEEEccCccccCCCchhhcCCCCC
Q 036375          637 SIGEMQLLQVIDLSRNSISGSISSSIGNCTFLKVLDLSYSSLSGVIPASLGQLTRLQSLHLNNNKLTGNLPSSFQNLTSL  716 (1009)
Q Consensus       637 ~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L  716 (1009)
                      .+.++.++++|+|++|+|+.. +..+..+++|+.|++++|+++..  +.|..+++|++|++++|+++...+..+..+++|
T Consensus        13 ~~~n~~~lr~L~L~~n~I~~i-~~~~~~l~~L~~L~Ls~N~i~~l--~~~~~l~~L~~L~ls~N~i~~l~~~~~~~l~~L   89 (162)
T d1a9na_          13 QYTNAVRDRELDLRGYKIPVI-ENLGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDL   89 (162)
T ss_dssp             EEECTTSCEEEECTTSCCCSC-CCGGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTC
T ss_pred             hccCcCcCcEEECCCCCCCcc-CccccccccCCEEECCCCCCCcc--CCcccCcchhhhhcccccccCCCcccccccccc
Confidence            355677788888888888744 55667788888888888888754  347778888888888888886555556778888


Q ss_pred             CEEECcCCcccccCch--hhhhcCcCCcEEEccCCcccccCCc----ccCCCCCCCEEE
Q 036375          717 ETLDLGNNRFSGNIPS--LLGNGFVGLRILSLRSNAFSGEIPS----KLSNLSSLQVLD  769 (1009)
Q Consensus       717 ~~L~L~~N~l~~~ip~--~l~~~l~~L~~L~L~~N~l~~~~p~----~l~~l~~L~~L~  769 (1009)
                      +.|++++|++. .++.  .+. .+++|+.|++++|+++. .|.    .+..+++|++||
T Consensus        90 ~~L~L~~N~i~-~~~~l~~l~-~l~~L~~L~l~~N~i~~-~~~~r~~~i~~lp~L~~LD  145 (162)
T d1a9na_          90 TELILTNNSLV-ELGDLDPLA-SLKSLTYLCILRNPVTN-KKHYRLYVIYKVPQVRVLD  145 (162)
T ss_dssp             CEEECCSCCCC-CGGGGGGGG-GCTTCCEEECCSSGGGG-STTHHHHHHHHCTTCSEET
T ss_pred             ccceecccccc-ccccccccc-cccccchhhcCCCcccc-ccchHHHHHHHCCCcCeeC
Confidence            88888888876 4443  233 47778888888887763 332    356677777776

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=99.19  E-value=1.4e-12  Score=128.46  Aligned_cols=37  Identities=22%  Similarity=0.142  Sum_probs=15.8

Q ss_pred             eEEEccCCccCCCCC-ccccCcCCCCeEEccCCccccc
Q 036375          829 HFIDLSGNNLHGDFP-TQLTKLVGLVVLNLSRNHIGGQ  865 (1009)
Q Consensus       829 ~~L~Ls~N~l~~~~p-~~l~~l~~L~~L~Ls~N~l~~~  865 (1009)
                      +.|+|++|+++.... ..+..+++|+.|+|++|++...
T Consensus       118 ~~L~L~~N~i~~~~~~~~l~~l~~L~~L~L~~N~l~~~  155 (198)
T d1m9la_         118 RVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYND  155 (198)
T ss_dssp             SEEEESEEECCCHHHHHHHTTTTTCSEEEECSSHHHHH
T ss_pred             cccccccchhccccccccccCCCccceeecCCCccccC
Confidence            344444444442211 2344444455555555544433

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=99.18  E-value=7.8e-13  Score=130.19  Aligned_cols=131  Identities=24%  Similarity=0.310  Sum_probs=84.2

Q ss_pred             cCchhhhhcCcCCcEEEccCCcccccCCcccCCCCCCCEEEccCCcCCCCCChhhhhhhhhhhccchhhhhhccccccce
Q 036375          729 NIPSLLGNGFVGLRILSLRSNAFSGEIPSKLSNLSSLQVLDLAENNLTGSIPGSVGDLKAMAHVQNIVKYLLFGRYRGIY  808 (1009)
Q Consensus       729 ~ip~~l~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~~~~~~~~~~~~~~~~~~  808 (1009)
                      .+|..+. .+++|+.|+|++|+++ .++ .+..+++|+.|++++|+++ .+|.....++.|                   
T Consensus        39 ~l~~sl~-~L~~L~~L~Ls~n~I~-~i~-~l~~l~~L~~L~Ls~N~i~-~i~~~~~~~~~L-------------------   95 (198)
T d1m9la_          39 KMDATLS-TLKACKHLALSTNNIE-KIS-SLSGMENLRILSLGRNLIK-KIENLDAVADTL-------------------   95 (198)
T ss_dssp             CCHHHHH-HTTTCCEEECSEEEES-CCC-CHHHHTTCCEEECCEEEEC-SCSSHHHHHHHC-------------------
T ss_pred             hhhhHHh-cccccceeECcccCCC-Ccc-cccCCccccChhhcccccc-cccccccccccc-------------------
Confidence            3444444 3666666666666665 333 3666777777777777776 345444444444                   


Q ss_pred             eeceEEEeecCCCCCCCCceeEEEccCCccCCCCCccccCcCCCCeEEccCCcccccCC-CCccCCCCCCEEeCCCCcCC
Q 036375          809 YEENLVINTKGSSKDTPRLFHFIDLSGNNLHGDFPTQLTKLVGLVVLNLSRNHIGGQIP-ENISGLHQLASLDLSSNNLS  887 (1009)
Q Consensus       809 ~~~~~~~~~~~~~~~~~~~l~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p-~~l~~l~~L~~L~Ls~N~l~  887 (1009)
                                          +.|++++|+++..  +.+..+++|+.|++++|+++.... ..+..+++|+.|++++|.+.
T Consensus        96 --------------------~~L~l~~N~i~~l--~~~~~l~~L~~L~L~~N~i~~~~~~~~l~~l~~L~~L~L~~N~l~  153 (198)
T d1m9la_          96 --------------------EELWISYNQIASL--SGIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLY  153 (198)
T ss_dssp             --------------------CEEECSEEECCCH--HHHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSSHHH
T ss_pred             --------------------ccccccccccccc--ccccccccccccccccchhccccccccccCCCccceeecCCCccc
Confidence                                6777888877743  347777888888888888875432 45777888888888888776


Q ss_pred             CCCccc----------ccCCCCCCeEe
Q 036375          888 GGIPSS----------LSSLSFLGYIN  904 (1009)
Q Consensus       888 ~~ip~~----------l~~l~~L~~L~  904 (1009)
                      ...+..          +..+++|++||
T Consensus       154 ~~~~~~~~~~~~r~~vi~~lp~L~~LD  180 (198)
T d1m9la_         154 NDYKENNATSEYRIEVVKRLPNLKKLD  180 (198)
T ss_dssp             HHHCTTTTHHHHHHHHHHHCSSCCEES
T ss_pred             cCcccccchhhHHHHHHHHCCCcCEeC
Confidence            543322          45567777765

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.10  E-value=1.7e-10  Score=108.19  Aligned_cols=104  Identities=19%  Similarity=0.129  Sum_probs=62.1

Q ss_pred             EEEccCCcccccCCcccccCCCCCeEEccCC-cCCccCcCcccCCCCCCEEECCCCcCcccCCccccCCCCCCEEEccCc
Q 036375          622 FLSVSGNRLTGKIPGSIGEMQLLQVIDLSRN-SISGSISSSIGNCTFLKVLDLSYSSLSGVIPASLGQLTRLQSLHLNNN  700 (1009)
Q Consensus       622 ~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N  700 (1009)
                      .++.+++.++. .|..+..+++|++|++++| .++...+..|.++++|+.|++++|+|+.+.|.+|..+++|++|+|++|
T Consensus        12 ~l~c~~~~~~~-~p~~l~~l~~l~~L~l~~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~Ls~N   90 (156)
T d2ifga3          12 GLRCTRDGALD-SLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFN   90 (156)
T ss_dssp             CEECCSSCCCT-TTTTSCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSS
T ss_pred             eEEecCCCCcc-CcccccCccccCeeecCCCccccccCchhhccccccCcceeeccccCCcccccccccccccceeccCC
Confidence            34444444332 2334455566666666544 366555566666777777777777777666666777777777777777


Q ss_pred             cccCCCchhhcCCCCCCEEECcCCccc
Q 036375          701 KLTGNLPSSFQNLTSLETLDLGNNRFS  727 (1009)
Q Consensus       701 ~l~~~~p~~~~~l~~L~~L~L~~N~l~  727 (1009)
                      +++...+..|.. .+|+.|+|++|++.
T Consensus        91 ~l~~l~~~~~~~-~~l~~L~L~~Np~~  116 (156)
T d2ifga3          91 ALESLSWKTVQG-LSLQELVLSGNPLH  116 (156)
T ss_dssp             CCSCCCSTTTCS-CCCCEEECCSSCCC
T ss_pred             CCcccChhhhcc-ccccccccCCCccc
Confidence            776433333433 35777777777664

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.08  E-value=2.2e-10  Score=107.43  Aligned_cols=91  Identities=16%  Similarity=0.134  Sum_probs=50.3

Q ss_pred             CCCCCeEEccCCcCCccCcCcccCCCCCCEEECCCC-cCcccCCccccCCCCCCEEEccCccccCCCchhhcCCCCCCEE
Q 036375          641 MQLLQVIDLSRNSISGSISSSIGNCTFLKVLDLSYS-SLSGVIPASLGQLTRLQSLHLNNNKLTGNLPSSFQNLTSLETL  719 (1009)
Q Consensus       641 l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N-~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L  719 (1009)
                      +...+.++.+++.+. ..|..+..+++|++|++++| .++.+.+..|.++++|+.|++++|+++...|.+|..+++|++|
T Consensus         7 c~~~~~l~c~~~~~~-~~p~~l~~l~~l~~L~l~~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L   85 (156)
T d2ifga3           7 PHGSSGLRCTRDGAL-DSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRL   85 (156)
T ss_dssp             CSSSSCEECCSSCCC-TTTTTSCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEE
T ss_pred             cCCCCeEEecCCCCc-cCcccccCccccCeeecCCCccccccCchhhccccccCcceeeccccCCcccccccccccccce
Confidence            334455666665555 33455555666666666544 3555445555566666666666666655555555555555555


Q ss_pred             ECcCCcccccCchh
Q 036375          720 DLGNNRFSGNIPSL  733 (1009)
Q Consensus       720 ~L~~N~l~~~ip~~  733 (1009)
                      +|++|+++ .+|..
T Consensus        86 ~Ls~N~l~-~l~~~   98 (156)
T d2ifga3          86 NLSFNALE-SLSWK   98 (156)
T ss_dssp             ECCSSCCS-CCCST
T ss_pred             eccCCCCc-ccChh
Confidence            55555554 44433

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.17  E-value=7.3e-08  Score=90.50  Aligned_cols=65  Identities=26%  Similarity=0.206  Sum_probs=27.0

Q ss_pred             cCCCCCCEEECCCCcCcccC--CccccCCCCCCEEEccCccccCCCchhhcCCCCCCEEECcCCccc
Q 036375          663 GNCTFLKVLDLSYSSLSGVI--PASLGQLTRLQSLHLNNNKLTGNLPSSFQNLTSLETLDLGNNRFS  727 (1009)
Q Consensus       663 ~~l~~L~~L~Ls~N~l~~~~--p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~  727 (1009)
                      ..+++|++|+|++|+|+...  +..+..+++|+.|++++|+++...+-.+.....|+.|++++|++.
T Consensus        62 ~~~~~L~~L~Ls~N~i~~l~~~~~~~~~l~~L~~L~Ls~N~i~~l~~l~~l~~~~L~~L~L~~Npl~  128 (162)
T d1koha1          62 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGNSLS  128 (162)
T ss_dssp             HHCTTCCCCCCCSSCCCCCSGGGTHHHHSTTCCCCCCTTSCCCCGGGHHHHTTCCCSSCCCTTSTTS
T ss_pred             HhCCCCCEeeCCCccccCCchhHHHHhhCCcccccccccCccccchhhhhhhccccceeecCCCCcC
Confidence            34445555555555554321  122333444444444444444322212222233444444444443

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.11  E-value=1.1e-07  Score=89.17  Aligned_cols=84  Identities=26%  Similarity=0.223  Sum_probs=45.1

Q ss_pred             cccCCCCCCEEEccCccccCCC--chhhcCCCCCCEEECcCCcccccCchhhhhcCcCCcEEEccCCcccccCCc-----
Q 036375          685 SLGQLTRLQSLHLNNNKLTGNL--PSSFQNLTSLETLDLGNNRFSGNIPSLLGNGFVGLRILSLRSNAFSGEIPS-----  757 (1009)
Q Consensus       685 ~~~~l~~L~~L~L~~N~l~~~~--p~~~~~l~~L~~L~L~~N~l~~~ip~~l~~~l~~L~~L~L~~N~l~~~~p~-----  757 (1009)
                      .+..+++|++|+|++|+++...  +..+..+++|+.|+|++|.++ .+++...-....|+.|++++|++......     
T Consensus        60 ~~~~~~~L~~L~Ls~N~i~~l~~~~~~~~~l~~L~~L~Ls~N~i~-~l~~l~~l~~~~L~~L~L~~Npl~~~~~~~~~y~  138 (162)
T d1koha1          60 IEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELK-SERELDKIKGLKLEELWLDGNSLSDTFRDQSTYI  138 (162)
T ss_dssp             HHHHCTTCCCCCCCSSCCCCCSGGGTHHHHSTTCCCCCCTTSCCC-CGGGHHHHTTCCCSSCCCTTSTTSSSSSSHHHHH
T ss_pred             HHHhCCCCCEeeCCCccccCCchhHHHHhhCCcccccccccCccc-cchhhhhhhccccceeecCCCCcCcCcccchhHH
Confidence            3345566666666666666432  234555666666666666665 34432221244566666666666543321     


Q ss_pred             --ccCCCCCCCEEE
Q 036375          758 --KLSNLSSLQVLD  769 (1009)
Q Consensus       758 --~l~~l~~L~~L~  769 (1009)
                        .+..+++|+.||
T Consensus       139 ~~i~~~~P~L~~LD  152 (162)
T d1koha1         139 SAIRERFPKLLRLD  152 (162)
T ss_dssp             HHHHTTSTTCCEET
T ss_pred             HHHHHHCCCCCEEC
Confidence              134566666664

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=97.48  E-value=2.6e-05  Score=72.87  Aligned_cols=64  Identities=17%  Similarity=0.189  Sum_probs=28.8

Q ss_pred             cccCCCCCeEEccCCcCCccCc----CcccCCCCCCEEECCCCcCcccC----CccccCCCCCCEEEccCcc
Q 036375          638 IGEMQLLQVIDLSRNSISGSIS----SSIGNCTFLKVLDLSYSSLSGVI----PASLGQLTRLQSLHLNNNK  701 (1009)
Q Consensus       638 ~~~l~~L~~L~Ls~N~l~~~~p----~~l~~l~~L~~L~Ls~N~l~~~~----p~~~~~l~~L~~L~L~~N~  701 (1009)
                      +...+.|++|++++|.+.....    ..+...+.|++|++++|.++...    -.++...++|++|++++|.
T Consensus        40 L~~n~~L~~L~Ls~n~l~~~~~~~la~~L~~n~~L~~L~L~~n~i~~~g~~~l~~aL~~n~sL~~L~l~~n~  111 (167)
T d1pgva_          40 ACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLLRSTLVTQSIVEFKADNQR  111 (167)
T ss_dssp             HTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHHHHTTTTCCCSEEECCCCS
T ss_pred             HhhCCccceeeccccccchhHHHHHhhhhhhcccccceeeehhhcchHHHHHHHHHHHhCCcCCEEECCCCc
Confidence            3444555555555555542211    22333455555555555554321    1123334445555555443

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=97.41  E-value=4e-05  Score=71.54  Aligned_cols=17  Identities=12%  Similarity=0.116  Sum_probs=10.8

Q ss_pred             ccCCCCCCCEEEccCCc
Q 036375          758 KLSNLSSLQVLDLAENN  774 (1009)
Q Consensus       758 ~l~~l~~L~~L~Ls~N~  774 (1009)
                      .+...++|+.|+++.+.
T Consensus       126 ~L~~n~sL~~l~l~~~~  142 (167)
T d1pgva_         126 AIEENESLLRVGISFAS  142 (167)
T ss_dssp             HHHHCSSCCEEECCCCC
T ss_pred             HHHhCCCccEeeCcCCC
Confidence            34456677777776654

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=96.68  E-value=0.00022  Score=66.38  Aligned_cols=64  Identities=9%  Similarity=0.134  Sum_probs=30.7

Q ss_pred             CCCCccEEEccC-Cccccc----CCcccccCCCCCeEEccCCcCCccC----cCcccCCCCCCEEECCCCcCc
Q 036375          616 SMPNLIFLSVSG-NRLTGK----IPGSIGEMQLLQVIDLSRNSISGSI----SSSIGNCTFLKVLDLSYSSLS  679 (1009)
Q Consensus       616 ~l~~L~~L~Ls~-n~l~~~----~~~~~~~l~~L~~L~Ls~N~l~~~~----p~~l~~l~~L~~L~Ls~N~l~  679 (1009)
                      +.+.|++|++++ +.++..    +..++...+.|++|++++|.++...    ...+...+.++.+++++|.+.
T Consensus        15 ~~~~L~~L~L~~~~~i~~~~~~~l~~al~~n~~L~~L~Ls~n~l~~~~~~~L~~~l~~~~~l~~l~l~~~~~~   87 (166)
T d1io0a_          15 NDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFIS   87 (166)
T ss_dssp             TCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCC
T ss_pred             cCCCCcEEEcCCCCCCCHHHHHHHHHHHhcCCccCeeeccCCcccHHHHHHHHHHHhhcccchhhhhcccccc
Confidence            445566666655 234321    2223344555666666666554321    122334455555555555554

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=96.27  E-value=0.00085  Score=62.14  Aligned_cols=19  Identities=11%  Similarity=0.041  Sum_probs=12.4

Q ss_pred             cccCCCCCCCEEEccCCcC
Q 036375          757 SKLSNLSSLQVLDLAENNL  775 (1009)
Q Consensus       757 ~~l~~l~~L~~L~Ls~N~l  775 (1009)
                      ..+...++|+.|+++.+..
T Consensus       126 ~~L~~n~~L~~L~l~~~~~  144 (166)
T d1io0a_         126 NMLEKNTTLLKFGYHFTQQ  144 (166)
T ss_dssp             HHHHHCSSCCEEECCCSSH
T ss_pred             HHHHhCCCcCEEeCcCCCC
Confidence            3455667788888776653