Citrus Sinensis ID: 036381

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-----
VWRASLTEVLGTALLVFALDTIVISSIQTDTIIAILLLATFPISGGHINPLVTFSAALIGHMTVTRAAIYILAQCVGGVFGALAPKAVVSTKIEHAFSLGGRTLIVVEQQPNGPVELGLDTGVALWLEIFCSFVFLFASMWMAFDERQAKALARVSVCIILGVVLGLLIFVSTTVTAQKGYGGAGRNPARCLGPAFVRGGHLWDRHWVFWAGPATACVAFALYIKLIPSQHLHTH
cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHcccccccEEccccccccccccccHHHHHHHHHHHHHHHHHHHHEEEEcccccccccHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccHHHHHHcccccccccEEHHHHHHHHHHHHHHHHHHccccccccc
cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHcccccccccccccccccccEcccccccccEEEEEEEEEEEEEEEEEEEccccccccccccccccccccHHHHHHHHHHHHHHHcccccccccccccccccEEEEccccccccEEEEccHHHHHHHHHHHHHHHHccccccc
VWRASLTEVLGTALLVFALDTIVISSIQTDTIIAILLLAtfpisgghinpLVTFSAALIGHMTVTRAAIYILAQCvggvfgalapKAVVSTKIEHAFSLGGRTLIVVeqqpngpvelGLDTGVALWLEIFCSFVFLFASMWMAFDERQAKALARVSVCIILGVVLGLLIFVSTTVtaqkgyggagrnparclgpafvrgghlwdrhwvfwagPATACVAFALYIKLipsqhlhth
VWRASLTEVLGTALLVFALDTIVISSIQTDTIIAILLLATFPISGGHINPLVTFSAALIGHMTVTRAAIYILAQCVGGVFGALAPKAVVSTKIEHAFSLGGRTLIVVEQQPNGPVELGLDTGVALWLEIFCSFVFLFASMWMAFDERQAKALARVSVCIILGVVLGLLIFVSTTVTAQkgyggagrnparCLGPAFVRGGHLWDRHWVFWAGPATACVAFALYIKLIPSQHLHTH
VWRASLTEVLGTALLVFALDTIVISSIQTDTIIAILLLATFPISGGHINPLVTFSAALIGHMTVTRAAIYILAQCVGGVFGALAPKAVVSTKIEHAFSLGGRTLIVVEQQPNGPVELGLDTGVALWLEIFCSFVFLFASMWMAFDERQAKALARVSVCiilgvvlglliFVSTTVTAQKGYGGAGRNPARCLGPAFVRGGHLWDRHWVFWAGPATACVAFALYIKLIPSQHLHTH
***ASLTEVLGTALLVFALDTIVISSIQTDTIIAILLLATFPISGGHINPLVTFSAALIGHMTVTRAAIYILAQCVGGVFGALAPKAVVSTKIEHAFSLGGRTLIVVEQQPNGPVELGLDTGVALWLEIFCSFVFLFASMWMAFDERQAKALARVSVCIILGVVLGLLIFVSTTVTAQKGYGGAGRNPARCLGPAFVRGGHLWDRHWVFWAGPATACVAFALYIKLIP*******
VWRASLTEVLGTALLVFALDTIVISSIQTDTIIAILLLATFPISGGHINPLVTFSAALIGHMTVTRAAIYILAQCVGGVFGALAPKAVVSTKIEHAFSLGGRTLIVVEQQPNGPVELGLDTGVALWLEIFCSFVFLFASMWMAFDERQAKALARVSVCIILGVVLGLLIFVSTTVTAQKGYGGAGRNPARCLGPAFVRGGHLWDRHWVFWAGPATACVAFALYIKL**S******
VWRASLTEVLGTALLVFALDTIVISSIQTDTIIAILLLATFPISGGHINPLVTFSAALIGHMTVTRAAIYILAQCVGGVFGALAPKAVVSTKIEHAFSLGGRTLIVVEQQPNGPVELGLDTGVALWLEIFCSFVFLFASMWMAFDERQAKALARVSVCIILGVVLGLLIFVSTTVTAQKGYGGAGRNPARCLGPAFVRGGHLWDRHWVFWAGPATACVAFALYIKLIPSQHLHTH
VWRASLTEVLGTALLVFALDTIVISSIQTDTIIAILLLATFPISGGHINPLVTFSAALIGHMTVTRAAIYILAQCVGGVFGALAPKAVVSTKIEHAFSLGGRTLIVVEQQPNGPVELGLDTGVALWLEIFCSFVFLFASMWMAFDERQAKALARVSVCIILGVVLGLLIFVSTTVTAQKGYGGAGRNPARCLGPAFVRGGHLWDRHWVFWAGPATACVAFALYIKLIPSQH****
iiiiHHHHHHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiii
iiiiiiiiHHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiii
iiiiiHHHHHHHHHHHHHHHHHHHHHooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiii
iiiiHHHHHHHHHHHHHHHHHHHooooooHHHHHHHHHHHHHHHHiiiRRRRRRRRRRRRRiiiHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooRRRRRRRRRRRRRRRRRRRRRRoooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiii
oooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiii
SSSSSSSSSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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VWRASLTEVLGTALLVFALDTIVISSIQTDTIIAILLLATFPISGGHINPLVTFSAALIGHMTVTRAAIYILAQCVGGVFGALAPKAVVSTKIEHAFSLGGRTLIVVEQQPNGPVELGLDTGVALWLEIFCSFVFLFASMWMAFDERQAKALARVSVCIILGVVLGLLIFVSTTVTAQKGYGGAGRNPARCLGPAFVRGGHLWDRHWVFWAGPATACVAFALYIKLIPSQHLHTH
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query235 2.2.26 [Sep-21-2011]
Q7XLR1282 Probable aquaporin PIP2-6 yes no 0.885 0.737 0.313 6e-19
P61838286 Aquaporin PIP1.1 OS=Vicia N/A no 0.889 0.730 0.321 2e-17
P61837286 Aquaporin PIP1-1 OS=Arabi yes no 0.889 0.730 0.321 2e-17
P42767282 Aquaporin PIP-type OS=Atr N/A no 0.885 0.737 0.299 2e-17
Q39196287 Probable aquaporin PIP1-4 no no 0.757 0.620 0.348 3e-17
Q08733286 Aquaporin PIP1-3 OS=Arabi yes no 0.757 0.622 0.353 4e-17
Q9ZVX8278 Probable aquaporin PIP2-8 no no 0.761 0.643 0.329 8e-17
Q06611286 Aquaporin PIP1-2 OS=Arabi yes no 0.889 0.730 0.313 1e-16
Q08451286 Probable aquaporin PIP-ty N/A no 0.885 0.727 0.303 1e-16
P30302285 Aquaporin PIP2-3 OS=Arabi no no 0.889 0.733 0.298 1e-16
>sp|Q7XLR1|PIP26_ORYSJ Probable aquaporin PIP2-6 OS=Oryza sativa subsp. japonica GN=PIP2-6 PE=2 SV=2 Back     alignment and function desciption
 Score = 94.4 bits (233), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 77/246 (31%), Positives = 115/246 (46%), Gaps = 38/246 (15%)

Query: 2   WRASLTEVLGTALLVF-ALDTIVISSIQTDT-----------------IIAILLLATFPI 43
           +RA + E + T L ++  + T++   +Q+                   +I IL+  T  I
Sbjct: 37  YRALIAEFIATLLFLYITVATVIGYKVQSSADQCGGVGTLGIAWAFGGMIFILVYCTAGI 96

Query: 44  SGGHINPLVTFSAALIGHMTVTRAAIYILAQCVGGVFGALAPKAVVSTKIEHAFSLGGRT 103
           SGGHINP VTF   L   ++V RA +YI+AQC+GG+ G      +V   ++H ++  G  
Sbjct: 97  SGGHINPAVTFGLLLARKVSVIRAVMYIVAQCLGGIVGV----GIVKGIMKHQYNANGGG 152

Query: 104 LIVVEQQPNGPVELGLDTGVALWLEIFCSFVFLFASMWMAFDERQAKALARVS-VCIILG 162
             +V          G  TG AL  EI  +FV ++      F     K  AR S V ++  
Sbjct: 153 ANMVAS--------GYSTGTALGAEIIGTFVLVYT----VFSATDPKRNARDSHVPVLAP 200

Query: 163 VVLGLLIFVSTTVTAQKGYGGAGRNPARCLGPAFVRG-GHLWDRHWVFWAGPATACVAFA 221
           + +G  +F+    T      G G NPAR +G A +      WD HW+FWAGP    +A A
Sbjct: 201 LPIGFAVFMVHLATIP--ITGTGINPARSIGAAVIYNQKKAWDDHWIFWAGPFIGALAAA 258

Query: 222 LYIKLI 227
            Y + I
Sbjct: 259 AYHQYI 264
Aquaporins facilitate the transport of water and small neutral solutes across cell membranes.
Oryza sativa subsp. japonica (taxid: 39947)
>sp|P61838|PIP11_VICFA Aquaporin PIP1.1 OS=Vicia faba GN=PIP1.1 PE=2 SV=1 Back     alignment and function description
>sp|P61837|PIP11_ARATH Aquaporin PIP1-1 OS=Arabidopsis thaliana GN=PIP1-1 PE=1 SV=1 Back     alignment and function description
>sp|P42767|PIP1_ATRCA Aquaporin PIP-type OS=Atriplex canescens PE=2 SV=1 Back     alignment and function description
>sp|Q39196|PIP14_ARATH Probable aquaporin PIP1-4 OS=Arabidopsis thaliana GN=PIP1.4 PE=1 SV=1 Back     alignment and function description
>sp|Q08733|PIP13_ARATH Aquaporin PIP1-3 OS=Arabidopsis thaliana GN=PIP1-3 PE=1 SV=1 Back     alignment and function description
>sp|Q9ZVX8|PIP28_ARATH Probable aquaporin PIP2-8 OS=Arabidopsis thaliana GN=PIP2-8 PE=1 SV=1 Back     alignment and function description
>sp|Q06611|PIP12_ARATH Aquaporin PIP1-2 OS=Arabidopsis thaliana GN=PIP1-2 PE=1 SV=1 Back     alignment and function description
>sp|Q08451|PIP1_SOLLC Probable aquaporin PIP-type pTOM75 OS=Solanum lycopersicum PE=2 SV=1 Back     alignment and function description
>sp|P30302|PIP23_ARATH Aquaporin PIP2-3 OS=Arabidopsis thaliana GN=PIP2-3 PE=1 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query235
224080564309 aquaporin, MIP family, PIP subfamily [Po 0.991 0.754 0.686 4e-90
359475063318 PREDICTED: aquaporin PIP1-3-like [Vitis 1.0 0.738 0.666 2e-89
292653565302 aquaporin XIP1;1 [Gossypium hirsutum] 0.995 0.774 0.663 5e-89
224103261306 aquaporin, MIP family, PIP subfamily [Po 0.995 0.764 0.668 7e-87
309385603325 X intrinsic protein [Solanum tuberosum] 0.987 0.713 0.628 2e-85
309385605326 X intrinsic protein [Solanum tuberosum] 0.987 0.711 0.628 2e-85
224103255306 aquaporin, MIP family, PIP subfamily [Po 0.987 0.758 0.657 2e-85
309385601335 X intrinsic protein [Ipomoea nil] 0.991 0.695 0.630 3e-85
309385609327 X intrinsic protein [Solanum lycopersicu 0.987 0.709 0.624 4e-85
354548813328 X intrinsic protein [Solanum lycopersicu 0.987 0.707 0.624 4e-85
>gi|224080564|ref|XP_002306164.1| aquaporin, MIP family, PIP subfamily [Populus trichocarpa] gi|222849128|gb|EEE86675.1| aquaporin, MIP family, PIP subfamily [Populus trichocarpa] Back     alignment and taxonomy information
 Score =  336 bits (862), Expect = 4e-90,   Method: Compositional matrix adjust.
 Identities = 169/246 (68%), Positives = 197/246 (80%), Gaps = 13/246 (5%)

Query: 2   WRASLTEVLGTALLVFALDTIVISSIQTDT-------------IIAILLLATFPISGGHI 48
           WRAS+ E+LGTA+LVFALDTIVIS+IQT T             I+ ILLLAT+PISGGHI
Sbjct: 62  WRASVAELLGTAVLVFALDTIVISTIQTQTKTPNLILSTLVAIIVTILLLATYPISGGHI 121

Query: 49  NPLVTFSAALIGHMTVTRAAIYILAQCVGGVFGALAPKAVVSTKIEHAFSLGGRTLIVVE 108
           NP+VTF+A L G +++++A IYILAQCVGG+ GALA KAVV+++IE  FSLGG TL VV 
Sbjct: 122 NPIVTFAALLTGLISISKAFIYILAQCVGGIVGALALKAVVNSEIERTFSLGGCTLTVVA 181

Query: 109 QQPNGPVELGLDTGVALWLEIFCSFVFLFASMWMAFDERQAKALARVSVCIILGVVLGLL 168
             P GP  +GL+TG ALWLEI C FVFLFAS+WMAFD RQAK L RV+V II+G+VLGLL
Sbjct: 182 PGPEGPTVVGLETGQALWLEIICGFVFLFASVWMAFDHRQAKGLGRVNVLIIVGIVLGLL 241

Query: 169 IFVSTTVTAQKGYGGAGRNPARCLGPAFVRGGHLWDRHWVFWAGPATACVAFALYIKLIP 228
           ++VSTTVTA KGY GAG NPARCLGPA VRGGHLW+ HWVFW GPA ACVAFA+Y K+IP
Sbjct: 242 VYVSTTVTATKGYAGAGLNPARCLGPAIVRGGHLWNGHWVFWVGPAIACVAFAIYTKVIP 301

Query: 229 SQHLHT 234
           SQ  HT
Sbjct: 302 SQLSHT 307

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|359475063|ref|XP_002276605.2| PREDICTED: aquaporin PIP1-3-like [Vitis vinifera] Back     alignment and taxonomy information
>gi|292653565|gb|ADE34299.1| aquaporin XIP1;1 [Gossypium hirsutum] Back     alignment and taxonomy information
>gi|224103261|ref|XP_002312987.1| aquaporin, MIP family, PIP subfamily [Populus trichocarpa] gi|222849395|gb|EEE86942.1| aquaporin, MIP family, PIP subfamily [Populus trichocarpa] Back     alignment and taxonomy information
>gi|309385603|gb|ADO66669.1| X intrinsic protein [Solanum tuberosum] Back     alignment and taxonomy information
>gi|309385605|gb|ADO66670.1| X intrinsic protein [Solanum tuberosum] Back     alignment and taxonomy information
>gi|224103255|ref|XP_002312985.1| aquaporin, MIP family, PIP subfamily [Populus trichocarpa] gi|222849393|gb|EEE86940.1| aquaporin, MIP family, PIP subfamily [Populus trichocarpa] Back     alignment and taxonomy information
>gi|309385601|gb|ADO66668.1| X intrinsic protein [Ipomoea nil] Back     alignment and taxonomy information
>gi|309385609|gb|ADO66672.1| X intrinsic protein [Solanum lycopersicum] Back     alignment and taxonomy information
>gi|354548813|ref|NP_001238800.1| X intrinsic protein [Solanum lycopersicum] gi|309385607|gb|ADO66671.1| X intrinsic protein [Solanum lycopersicum] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query235
TAIR|locus:2039385278 PIP2;8 "plasma membrane intrin 0.761 0.643 0.324 4e-19
TAIR|locus:2082822286 PIP1A "plasma membrane intrins 0.761 0.625 0.349 5.8e-18
TAIR|locus:2117939287 PIP1;5 "plasma membrane intrin 0.757 0.620 0.333 1.6e-17
TAIR|locus:2131601280 PIP3 "plasma membrane intrinsi 0.761 0.639 0.309 3.2e-17
FB|FBgn0015872245 Drip "Drip" [Drosophila melano 0.612 0.587 0.286 5.3e-17
UNIPROTKB|E2REN5263 AQP8 "Uncharacterized protein" 0.497 0.444 0.377 5.5e-16
DICTYBASE|DDB_G0274209411 DDB_G0274209 [Dictyostelium di 0.808 0.462 0.281 9.2e-16
RGD|2146263 Aqp8 "aquaporin 8" [Rattus nor 0.510 0.456 0.295 7.9e-15
ZFIN|ZDB-GENE-040912-106260 aqp8a.1 "aquaporin 8a, tandem 0.234 0.211 0.403 9.4e-15
UNIPROTKB|O94778261 AQP8 "Aquaporin-8" [Homo sapie 0.6 0.540 0.337 2.2e-14
TAIR|locus:2039385 PIP2;8 "plasma membrane intrinsic protein 2;8" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 229 (85.7 bits), Expect = 4.0e-19, P = 4.0e-19
 Identities = 64/197 (32%), Positives = 92/197 (46%)

Query:    32 IIAILLLATFPISGGHINPLVTFSAALIGHMTVTRAAIYILAQCVGGVFGALAPKAVVST 91
             +I +L+  T  ISGGHINP VTF   L   +++ RA  Y++AQC+G + G    KA + T
Sbjct:    81 MIFVLVYCTAGISGGHINPAVTFGLFLARKVSLPRAVAYMVAQCLGAICGVGLVKAFMMT 140

Query:    92 KIEHAFSLGGRTLIVVEQQPNGPVELGLDTGVALWLEIFCSFVFLFASMWMAFDERQAKA 151
               +    LGG    V +         G  TG AL  EI  +FV ++ +++ A D +++  
Sbjct:   141 PYKR---LGGGANTVAD---------GYSTGTALGAEIIGTFVLVY-TVFSATDPKRSAR 187

Query:   152 LARVSVCXXXXXXXXXXXFVSTTVTAQKGYGGAGRNPARCLGPAFVRGGH-LWDRHWVFW 210
              + V V                T+       G G NPAR  G A +      WD HW+FW
Sbjct:   188 DSHVPVLAPLPIGFAVFMVHLATIPIT----GTGINPARSFGAAVIYNNEKAWDDHWIFW 243

Query:   211 AGPATACVAFALYIKLI 227
              GP    +A A Y + I
Sbjct:   244 VGPFVGALAAAAYHQYI 260
GO:0005215 "transporter activity" evidence=IEA
GO:0005737 "cytoplasm" evidence=ISM
GO:0006810 "transport" evidence=IEA;ISS
GO:0006833 "water transport" evidence=IEA
GO:0015250 "water channel activity" evidence=ISS
GO:0016020 "membrane" evidence=IEA;ISS;IDA
GO:0016021 "integral to membrane" evidence=IEA
GO:0055085 "transmembrane transport" evidence=IEA
GO:0009737 "response to abscisic acid stimulus" evidence=IDA
GO:0005515 "protein binding" evidence=IPI
TAIR|locus:2082822 PIP1A "plasma membrane intrinsic protein 1A" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2117939 PIP1;5 "plasma membrane intrinsic protein 1;5" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2131601 PIP3 "plasma membrane intrinsic protein 3" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
FB|FBgn0015872 Drip "Drip" [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
UNIPROTKB|E2REN5 AQP8 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
DICTYBASE|DDB_G0274209 DDB_G0274209 [Dictyostelium discoideum (taxid:44689)] Back     alignment and assigned GO terms
RGD|2146 Aqp8 "aquaporin 8" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-040912-106 aqp8a.1 "aquaporin 8a, tandem duplicate 1" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
UNIPROTKB|O94778 AQP8 "Aquaporin-8" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query235
pfam00230218 pfam00230, MIP, Major intrinsic protein 5e-26
cd00333228 cd00333, MIP, Major intrinsic protein (MIP) superf 7e-26
TIGR00861216 TIGR00861, MIP, MIP family channel proteins 2e-22
PLN00027252 PLN00027, PLN00027, aquaporin TIP; Provisional 4e-16
COG0580241 COG0580, GlpF, Glycerol uptake facilitator and rel 2e-15
PLN00183274 PLN00183, PLN00183, putative aquaporin NIP7; Provi 2e-14
PLN00166250 PLN00166, PLN00166, aquaporin TIP2; Provisional 2e-13
PLN00182283 PLN00182, PLN00182, putative aquaporin NIP4; Provi 3e-13
PLN00026298 PLN00026, PLN00026, aquaporin NIP; Provisional 1e-12
PLN00184296 PLN00184, PLN00184, aquaporin NIP1; Provisional 2e-10
PTZ00016294 PTZ00016, PTZ00016, aquaglyceroporin; Provisional 6e-10
PRK05420231 PRK05420, PRK05420, aquaporin Z; Provisional 3e-09
PLN00167256 PLN00167, PLN00167, aquaporin TIP5; Provisional 1e-05
>gnl|CDD|215807 pfam00230, MIP, Major intrinsic protein Back     alignment and domain information 
 Score =  100 bits (251), Expect = 5e-26
 Identities = 64/233 (27%), Positives = 96/233 (41%), Gaps = 34/233 (14%)

Query: 2   WRASLTEVLGTALLVFA-----------LDTIVISSIQTDTIIAILLLATFPISGGHINP 50
           WRA + E L T L VF               ++  ++     +  L+  T  ISG H+NP
Sbjct: 8   WRAVIAEFLATLLFVFFGVGSALGVKKLYGGLLAVALAFGLALFTLVYCTGHISGAHLNP 67

Query: 51  LVTFSAALIGHMTVTRAAIYILAQCVGGVFGALAPKAVVSTKIEHAFSLGGRTLIVVEQQ 110
            VTF+  +   +++ RA  YI+AQ +G + GA   K V  T           +       
Sbjct: 68  AVTFALLVGRRISLLRAIYYIIAQLLGAICGAALLKGV--TNGLQRAGGFANS------- 118

Query: 111 PNGPVELGLDTGVALWLEIFCSFVFLFASMWMAFDERQAKALARVSVCIILGVVLGLLIF 170
               +  G++ G A  +EI  +F  ++       D R        S+  +  + +G  +F
Sbjct: 119 ----LAPGVNAGQAFVVEIILTFQLVYTVFATTDDPR------NGSLGHVAPLAIGFAVF 168

Query: 171 VSTTVTAQKGYGGAGRNPARCLGPAFVRGGHLWDRHWVFWAGPATACVAFALY 223
           ++        Y GA  NPAR  GPA V     WD HWV+W GP       AL 
Sbjct: 169 LNHLAGGP--YTGASMNPARSFGPAVV--LWKWDDHWVYWVGPLIGAALAALV 217

MIP (Major Intrinsic Protein) family proteins exhibit essentially two distinct types of channel properties: (1) specific water transport by the aquaporins, and (2) small neutral solutes transport, such as glycerol by the glycerol facilitators. Length = 218
>gnl|CDD|238204 cd00333, MIP, Major intrinsic protein (MIP) superfamily Back     alignment and domain information
>gnl|CDD|233156 TIGR00861, MIP, MIP family channel proteins Back     alignment and domain information
>gnl|CDD|177664 PLN00027, PLN00027, aquaporin TIP; Provisional Back     alignment and domain information
>gnl|CDD|223653 COG0580, GlpF, Glycerol uptake facilitator and related permeases (Major Intrinsic Protein Family) [Carbohydrate transport and metabolism] Back     alignment and domain information
>gnl|CDD|215092 PLN00183, PLN00183, putative aquaporin NIP7; Provisional Back     alignment and domain information
>gnl|CDD|165733 PLN00166, PLN00166, aquaporin TIP2; Provisional Back     alignment and domain information
>gnl|CDD|165748 PLN00182, PLN00182, putative aquaporin NIP4; Provisional Back     alignment and domain information
>gnl|CDD|177663 PLN00026, PLN00026, aquaporin NIP; Provisional Back     alignment and domain information
>gnl|CDD|177778 PLN00184, PLN00184, aquaporin NIP1; Provisional Back     alignment and domain information
>gnl|CDD|240230 PTZ00016, PTZ00016, aquaglyceroporin; Provisional Back     alignment and domain information
>gnl|CDD|235453 PRK05420, PRK05420, aquaporin Z; Provisional Back     alignment and domain information
>gnl|CDD|215085 PLN00167, PLN00167, aquaporin TIP5; Provisional Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 235
KOG0223238 consensus Aquaporin (major intrinsic protein famil 100.0
COG0580241 GlpF Glycerol uptake facilitator and related perme 100.0
PRK05420231 aquaporin Z; Provisional 100.0
PLN00184296 aquaporin NIP1; Provisional 100.0
PTZ00016294 aquaglyceroporin; Provisional 100.0
KOG0224316 consensus Aquaporin (major intrinsic protein famil 100.0
PLN00026298 aquaporin NIP; Provisional 100.0
PF00230227 MIP: Major intrinsic protein; InterPro: IPR000425 100.0
PLN00182283 putative aquaporin NIP4; Provisional 100.0
PLN00166250 aquaporin TIP2; Provisional 100.0
PLN00027252 aquaporin TIP; Provisional 100.0
PLN00167256 aquaporin TIP5; Provisional 100.0
cd00333228 MIP Major intrinsic protein (MIP) superfamily. Mem 100.0
PLN00183274 putative aquaporin NIP7; Provisional 100.0
TIGR00861216 MIP MIP family channel proteins. processes. Some m 100.0
PLN00026 298 aquaporin NIP; Provisional 99.68
PLN00184 296 aquaporin NIP1; Provisional 99.64
PLN00183 274 putative aquaporin NIP7; Provisional 99.6
PLN00166 250 aquaporin TIP2; Provisional 99.59
PLN00167 256 aquaporin TIP5; Provisional 99.58
PLN00182 283 putative aquaporin NIP4; Provisional 99.54
PLN00027 252 aquaporin TIP; Provisional 99.53
PTZ00016 294 aquaglyceroporin; Provisional 99.53
PRK05420 231 aquaporin Z; Provisional 99.52
cd00333 228 MIP Major intrinsic protein (MIP) superfamily. Mem 99.51
TIGR00861 216 MIP MIP family channel proteins. processes. Some m 99.46
COG0580 241 GlpF Glycerol uptake facilitator and related perme 99.43
KOG0223 238 consensus Aquaporin (major intrinsic protein famil 99.34
KOG0224 316 consensus Aquaporin (major intrinsic protein famil 99.34
PF00230 227 MIP: Major intrinsic protein; InterPro: IPR000425 99.25
>KOG0223 consensus Aquaporin (major intrinsic protein family) [Carbohydrate transport and metabolism] Back     alignment and domain information 
Probab=100.00  E-value=6.2e-49  Score=328.05  Aligned_cols=206  Identities=35%  Similarity=0.559  Sum_probs=172.8

Q ss_pred             CHHHHHHHHHHHHHHHHHHhhhhhcccC--Cch-----------hhHhHHHhhcCccccccchHHHHHHHHhccCCccch
Q 036381            1 VWRASLTEVLGTALLVFALDTIVISSIQ--TDT-----------IIAILLLATFPISGGHINPLVTFSAALIGHMTVTRA   67 (235)
Q Consensus         1 ~~r~~~~Ef~gT~~lv~~~~~~~~~~~~--~~~-----------~~~~~i~~~~~iSGah~NPavTla~~~~g~~~~~~~   67 (235)
                      ++|++++||++|++++|.+|+....+..  ...           .+++.+++++++||||+|||||+++++.|++++.+.
T Consensus        10 ~~~~~~aEF~~T~~~vf~g~~~~~~~~~~~~~~~l~~ial~~Gl~v~v~i~~~g~iSGaH~NPAVT~a~~~~~~isl~~~   89 (238)
T KOG0223|consen   10 FLRALIAEFLATFLFVFAGCGSVVVNPKYGGPVGLLGIALAFGLAVFVLVYSTGHISGAHFNPAVTLAFAVGGKISLFRA   89 (238)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhccccCCCchhHHHHHHHHHHHHHHHhhhccccccccCHHHHHHHHHhCCCcHHHh
Confidence            4799999999999999998877654441  111           678899999999999999999999999999999999


Q ss_pred             hhheeccchhHHHhhhhhhhhcccchhhhhcCCCceEEEeeccCCCCcccCCchhhHHHHHHHHHHHHHHHHHHHhhcch
Q 036381           68 AIYILAQCVGGVFGALAPKAVVSTKIEHAFSLGGRTLIVVEQQPNGPVELGLDTGVALWLEIFCSFVFLFASMWMAFDER  147 (235)
Q Consensus        68 ~~yi~aQ~~Ga~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~E~i~T~ilv~~~~~~~~~~~  147 (235)
                      +.|+++|++|+++|+.+++.+.+++.... ....       +.+.    .+.+..|++..|++.||+|+++++..+.|+|
T Consensus        90 ~~Y~vaQ~lGa~~g~~~l~~~~~~~~~~~-~~~~-------~~~~----~~~~~~q~~~~E~ilTf~Lv~~v~~~a~d~~  157 (238)
T KOG0223|consen   90 VAYIVAQLLGAIAGAALLKVVTPGQYNRK-GLGL-------TGLA----PGLSTGQGLVIEIILTFILVFTVFATATDPR  157 (238)
T ss_pred             HHHHHHHHHHHHHHHHHHheecCcccccC-Ccce-------eccC----CCCCcchhHHHHHHHHHHHhheeEEEeecCC
Confidence            99999999999999999999999862111 1111       1222    2689999999999999999999998788888


Q ss_pred             hhhhhhhhhHHHHHHHHHHHHHHHHhhhccCCCCCCCCcCcchhhhhHHhhCCCCCCceeeeehhHHHHHHHHHHHHHHh
Q 036381          148 QAKALARVSVCIILGVVLGLLIFVSTTVTAQKGYGGAGRNPARCLGPAFVRGGHLWDRHWVFWAGPATACVAFALYIKLI  227 (235)
Q Consensus       148 ~~~~~~~~~~~~~ig~~~~~~v~~~~~~~~~~~~sG~~lNPAr~lg~a~~~g~~~~~~~wvy~v~p~~Ga~~a~~~~~~l  227 (235)
                      ++     .+.|+.+|+++.+.++..+      ++||++|||||+|||+++.+  .|++|||||+||++|+++++++||++
T Consensus       158 ~~-----~~a~l~IG~~v~~~~l~~g------~~TG~sMNPArSfGpAvv~~--~w~~hwiYwvgP~~Ga~~a~~~y~~v  224 (238)
T KOG0223|consen  158 RS-----ELAPLAIGFSVGLNILAAG------PFTGASMNPARSFGPAVVYG--SWDDHWIYWVGPLLGAILAALIYRLV  224 (238)
T ss_pred             Cc-----ccHHHHHHHHHHHHHHeec------CcCcCccCcHHHhhHHHHhc--CCCcEEEEEhhHHHHHHHHHHHHHHh
Confidence            76     2347777777777666543      89999999999999999987  69999999999999999999999988


Q ss_pred             cCCC
Q 036381          228 PSQH  231 (235)
Q Consensus       228 ~~~~  231 (235)
                      ..+.
T Consensus       225 ~~~~  228 (238)
T KOG0223|consen  225 FIPD  228 (238)
T ss_pred             ccCc
Confidence            7654

>COG0580 GlpF Glycerol uptake facilitator and related permeases (Major Intrinsic Protein Family) [Carbohydrate transport and metabolism] Back     alignment and domain information
>PRK05420 aquaporin Z; Provisional Back     alignment and domain information
>PLN00184 aquaporin NIP1; Provisional Back     alignment and domain information
>PTZ00016 aquaglyceroporin; Provisional Back     alignment and domain information
>KOG0224 consensus Aquaporin (major intrinsic protein family) [Carbohydrate transport and metabolism] Back     alignment and domain information
>PLN00026 aquaporin NIP; Provisional Back     alignment and domain information
>PF00230 MIP: Major intrinsic protein; InterPro: IPR000425 A number of transmembrane (TM) channel proteins can be grouped together on the basis of sequence similarities [, , , , ] Back     alignment and domain information
>PLN00182 putative aquaporin NIP4; Provisional Back     alignment and domain information
>PLN00166 aquaporin TIP2; Provisional Back     alignment and domain information
>PLN00027 aquaporin TIP; Provisional Back     alignment and domain information
>PLN00167 aquaporin TIP5; Provisional Back     alignment and domain information
>cd00333 MIP Major intrinsic protein (MIP) superfamily Back     alignment and domain information
>PLN00183 putative aquaporin NIP7; Provisional Back     alignment and domain information
>TIGR00861 MIP MIP family channel proteins Back     alignment and domain information
>PLN00026 aquaporin NIP; Provisional Back     alignment and domain information
>PLN00184 aquaporin NIP1; Provisional Back     alignment and domain information
>PLN00183 putative aquaporin NIP7; Provisional Back     alignment and domain information
>PLN00166 aquaporin TIP2; Provisional Back     alignment and domain information
>PLN00167 aquaporin TIP5; Provisional Back     alignment and domain information
>PLN00182 putative aquaporin NIP4; Provisional Back     alignment and domain information
>PLN00027 aquaporin TIP; Provisional Back     alignment and domain information
>PTZ00016 aquaglyceroporin; Provisional Back     alignment and domain information
>PRK05420 aquaporin Z; Provisional Back     alignment and domain information
>cd00333 MIP Major intrinsic protein (MIP) superfamily Back     alignment and domain information
>TIGR00861 MIP MIP family channel proteins Back     alignment and domain information
>COG0580 GlpF Glycerol uptake facilitator and related permeases (Major Intrinsic Protein Family) [Carbohydrate transport and metabolism] Back     alignment and domain information
>KOG0223 consensus Aquaporin (major intrinsic protein family) [Carbohydrate transport and metabolism] Back     alignment and domain information
>KOG0224 consensus Aquaporin (major intrinsic protein family) [Carbohydrate transport and metabolism] Back     alignment and domain information
>PF00230 MIP: Major intrinsic protein; InterPro: IPR000425 A number of transmembrane (TM) channel proteins can be grouped together on the basis of sequence similarities [, , , , ] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query235
2b5f_A303 Crystal Structure Of The Spinach Aquaporin Sopip2;1 3e-16
3cn6_A304 Crystal Structure Of The Spinach Aquaporin Sopip2;1 3e-16
1z98_A281 Crystal Structure Of The Spinach Aquaporin Sopip2;1 4e-16
3cn5_A304 Crystal Structure Of The Spinach Aquaporin Sopip2;1 5e-16
3cll_A300 Crystal Structure Of The Spinach Aquaporin Sopip2;1 5e-16
2zz9_A301 Structure Of Aquaporin-4 S180d Mutant At 2.8 A Reso 1e-13
3iyz_A340 Structure Of Aquaporin-4 S180d Mutant At 10.0 A Res 1e-13
2d57_A301 Double Layered 2d Crystal Structure Of Aquaporin-4 2e-13
3gd8_A223 Crystal Structure Of Human Aquaporin 4 At 1.8 And I 1e-12
2b6o_A263 Electron Crystallographic Structure Of Lens Aquapor 4e-12
1sor_A235 Aquaporin-0 Membrane Junctions Reveal The Structure 5e-12
3m9i_A220 Electron Crystallographic Structure Of Lens Aquapor 6e-12
1ymg_A263 The Channel Architecture Of Aquaporin O At 2.2 Angs 6e-12
1fqy_A269 Structure Of Aquaporin-1 At 3.8 A Resolution By Ele 5e-11
1j4n_A271 Crystal Structure Of The Aqp1 Water Channel Length 1e-09
3d9s_A266 Human Aquaporin 5 (Aqp5) - High Resolution X-Ray St 3e-08
3ne2_A246 Archaeoglobus Fulgidus Aquaporin Length = 246 8e-07
2evu_A246 Crystal Structure Of Aquaporin Aqpm At 2.3a Resolut 6e-06
2w1p_A279 1.4 Angstrom Crystal Structure Of P.Pastoris Aquapo 6e-05
>pdb|2B5F|A Chain A, Crystal Structure Of The Spinach Aquaporin Sopip2;1 In An Open Conformation To 3.9 Resolution Length = 303 Back     alignment and structure 
Iteration: 1

 Score = 82.0 bits (201), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 68/243 (27%), Positives = 107/243 (44%), Gaps = 34/243 (13%)
Query: 2   WRASLTEVLGTALLVF---------ALDTIVISSIQTDTI-------IAILLLATFPISG 45
           WRA++ E + T L ++         + +T+V  S+    I       I +L+  T  ISG
Sbjct: 38  WRAAIAEFIATLLFLYITVATVIGHSKETVVCGSVGLLGIAWAFGGMIFVLVYCTAGISG 97
Query: 46  GHINPLVTFSAALIGHMTVTRAAIYILAQCVGGVFGALAPKAVVSTKIEHAFSLGGRTLI 105
           GHINP VTF   L   +++ RA +Y++AQC+G + G    KA +       F  G  +  
Sbjct: 98  GHINPAVTFGLFLARKVSLLRALVYMIAQCLGAICGVGLVKAFMKGPYNQ-FGGGANS-- 154
Query: 106 VVEQQPNGPVELGLDTGVALWLEIFCSFVFLFASMWMAFDERQAKALARVSVCXXXXXXX 165
                    V LG + G AL  EI  +FV ++ +++ A D +++   + V +        
Sbjct: 155 ---------VALGYNKGTALGAEIIGTFVLVY-TVFSATDPKRSARDSHVPILAPLPIGF 204
Query: 166 XXXXFVSTTVTAQKGYGGAGRNPARCLGPAFV-RGGHLWDRHWVFWAGPATACVAFALYI 224
                   T+       G G NPAR  G A +     +WD  W+FW GP       A Y 
Sbjct: 205 AVFMVHLATIPIT----GTGINPARSFGAAVIFNSNKVWDDQWIFWVGPFIGAAVAAAYH 260
Query: 225 KLI 227
           + +
Sbjct: 261 QYV 263
>pdb|3CN6|A Chain A, Crystal Structure Of The Spinach Aquaporin Sopip2;1 S274e Mutant Length = 304 Back     alignment and structure
>pdb|1Z98|A Chain A, Crystal Structure Of The Spinach Aquaporin Sopip2;1 In A Closed Conformation Length = 281 Back     alignment and structure
>pdb|3CN5|A Chain A, Crystal Structure Of The Spinach Aquaporin Sopip2;1 S115e, S274e Mutant Length = 304 Back     alignment and structure
>pdb|3CLL|A Chain A, Crystal Structure Of The Spinach Aquaporin Sopip2;1 S115e Mutant Length = 300 Back     alignment and structure
>pdb|2ZZ9|A Chain A, Structure Of Aquaporin-4 S180d Mutant At 2.8 A Resolution By Electron Crystallography Length = 301 Back     alignment and structure
>pdb|3IYZ|A Chain A, Structure Of Aquaporin-4 S180d Mutant At 10.0 A Resolution From Electron Micrograph Length = 340 Back     alignment and structure
>pdb|2D57|A Chain A, Double Layered 2d Crystal Structure Of Aquaporin-4 (Aqp4m23) At 3.2 A Resolution By Electron Crystallography Length = 301 Back     alignment and structure
>pdb|3GD8|A Chain A, Crystal Structure Of Human Aquaporin 4 At 1.8 And Its Mechanism Of Conductance Length = 223 Back     alignment and structure
>pdb|2B6O|A Chain A, Electron Crystallographic Structure Of Lens Aquaporin-0 (Aqp0) (Lens Mip) At 1.9a Resolution, In A Closed Pore State Length = 263 Back     alignment and structure
>pdb|1SOR|A Chain A, Aquaporin-0 Membrane Junctions Reveal The Structure Of A Closed Water Pore Length = 235 Back     alignment and structure
>pdb|3M9I|A Chain A, Electron Crystallographic Structure Of Lens Aquaporin-0 (Aqp Mip) In E. Coli Polar Lipids Length = 220 Back     alignment and structure
>pdb|1YMG|A Chain A, The Channel Architecture Of Aquaporin O At 2.2 Angstrom Resolution Length = 263 Back     alignment and structure
>pdb|1FQY|A Chain A, Structure Of Aquaporin-1 At 3.8 A Resolution By Electron Crystallography Length = 269 Back     alignment and structure
>pdb|1J4N|A Chain A, Crystal Structure Of The Aqp1 Water Channel Length = 271 Back     alignment and structure
>pdb|3D9S|A Chain A, Human Aquaporin 5 (Aqp5) - High Resolution X-Ray Structure Length = 266 Back     alignment and structure
>pdb|3NE2|A Chain A, Archaeoglobus Fulgidus Aquaporin Length = 246 Back     alignment and structure
>pdb|2EVU|A Chain A, Crystal Structure Of Aquaporin Aqpm At 2.3a Resolution Length = 246 Back     alignment and structure
>pdb|2W1P|A Chain A, 1.4 Angstrom Crystal Structure Of P.Pastoris Aquaporin, Aqy1, In A Closed Conformation At Ph 8.0 Length = 279 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query235
2o9g_A234 Aquaporin Z; integral membrane protein, structural 3e-36
3iyz_A340 Aquaporin-4; water transport, water channel, two-d 2e-35
3cn5_A304 Aquaporin; membrane protein, transmembrane, transp 3e-35
2w2e_A279 AQY1, aquaporin, aquaporin PIP2-7 7; yeast, gating 5e-35
3llq_A256 Aquaporin Z 2; aquaporin tetramer, membrane protei 5e-35
2b6o_A263 Aquaporin-0, lens fiber major intrinsic protein; a 7e-35
2zz9_A301 Aquaporin-4; water transport, water channel, two-d 1e-34
3d9s_A266 Aquaporin-5, AQP-5; aquaglyceroporin, membrane pro 2e-34
1j4n_A271 Aquaporin 1; membrane protein, channel protein, tr 1e-33
3gd8_A223 Aquaporin-4; proton exclusion, structural genomics 1e-32
2f2b_A246 Aquaporin AQPM; protein, integral membrane protein 9e-26
3c02_A258 Aquaglyceroporin; membrane protein, glycerol, wate 3e-18
1ldf_A281 Glycerol uptake facilitator protein; glycerol-cond 3e-17
>2o9g_A Aquaporin Z; integral membrane protein, structural genomics, P protein structure initiative, center for structures of MEMB proteins, CSMP; HET: BOG; 1.90A {Escherichia coli} PDB: 2o9f_A* 2o9d_A* 2o9e_A 1rc2_B* 2abm_A* 3nk5_A* 3nka_A* 3nkc_A* Length = 234 Back     alignment and structure
 Score =  126 bits (320), Expect = 3e-36
 Identities = 56/240 (23%), Positives = 84/240 (35%), Gaps = 29/240 (12%)

Query: 2   WRASLTEVLGTALLVFA-LDTIVISSIQTDT-------------IIAILLLATFPISGGH 47
           +R    E  GT  LVF    + V+++   +               +  +  A   ISGGH
Sbjct: 5   FRKLAAESFGTFWLVFGGSGSAVLAAGFPELGIGFAGVALAFGLTVLTMAFAVGHISGGH 64

Query: 48  INPLVTFSAALIGHMTVTRAAIYILAQCVGGVFGALAPKAVVSTKIEHAFSLGGRTLIVV 107
            NP VT      G         Y++AQ VGG+  A     + S K     +  G      
Sbjct: 65  FNPAVTIGLWAGGRFPAKEVVGYVIAQVVGGIVAAALLYLIASGKTGFDAAASG----FA 120

Query: 108 EQQPNGPVELGLDTGVALWLEIFCSFVFLFASMWMAFDERQAKALARVSVCIILGVVLGL 167
                     G     AL +E+  S  FL      A D+      A +++    G+   L
Sbjct: 121 SNGYGEHSPGGYSMLSALVVELVLSAGFLLVIH-GATDKFAPAGFAPIAI----GLACTL 175

Query: 168 LIFVSTTVTAQKGYGGAGRNPARCLGPAFVRGGHLWDRHWVFWAGPATACVAFALYIKLI 227
           +  +S  VT          NPAR    A  +GG   ++ W FW  P    +   L  + +
Sbjct: 176 IHLISIPVT------NTSVNPARSTAVAIFQGGWALEQLWFFWVVPIVGGIIGGLIYRTL 229
>3iyz_A Aquaporin-4; water transport, water channel, two-dimensional C membrane protein, baculovirus expression system, glycoprote membrane; 10.00A {Rattus norvegicus} Length = 340 Back     alignment and structure
>3cn5_A Aquaporin; membrane protein, transmembrane, transport, transport protein; 2.05A {Spinacia oleracea} PDB: 3cn6_A 3cll_A 1z98_A 2b5f_A Length = 304 Back     alignment and structure
>2w2e_A AQY1, aquaporin, aquaporin PIP2-7 7; yeast, gating, membrane protein; HET: BOG; 1.15A {Komagataella pastoris} PDB: 2w1p_A* Length = 279 Back     alignment and structure
>3llq_A Aquaporin Z 2; aquaporin tetramer, membrane protein, water channel, structu genomics, PSI-2, protein structure initiative; 2.01A {Agrobacterium tumefaciens str} Length = 256 Back     alignment and structure
>2b6o_A Aquaporin-0, lens fiber major intrinsic protein; aquaporin-0 junctions, AQP0, lens MIP, lipid-protein interac membrane, lipid bilayer; HET: MC3; 1.90A {Ovis aries} SCOP: f.19.1.1 PDB: 1ymg_A* 2b6p_A 2c32_A 1sor_A 3m9i_A* Length = 263 Back     alignment and structure
>2zz9_A Aquaporin-4; water transport, water channel, two-dimensional crystal, electron diffraction, electron microscopy, membrane protein; HET: PEE; 2.80A {Rattus norvegicus} PDB: 2d57_A Length = 301 Back     alignment and structure
>3d9s_A Aquaporin-5, AQP-5; aquaglyceroporin, membrane protein, water transport, X-RAY diffraction, lipid, phosphatidylserine, PSF, NPA, AR/R, water channel; HET: PS6; 2.00A {Homo sapiens} Length = 266 Back     alignment and structure
>1j4n_A Aquaporin 1; membrane protein, channel protein, transmembrane helices; HET: BNG; 2.20A {Bos taurus} SCOP: f.19.1.1 PDB: 1h6i_A 1fqy_A 1ih5_A Length = 271 Back     alignment and structure
>3gd8_A Aquaporin-4; proton exclusion, structural genomics protein structure initiative, center for structures of MEMB proteins, CSMP, glycoprotein; HET: BOG; 1.80A {Homo sapiens} Length = 223 Back     alignment and structure
>2f2b_A Aquaporin AQPM; protein, integral membrane protein, channel, structural GENO PSI-2, protein structure initiative; 1.68A {Methanothermobacter marburgensis str} PDB: 2evu_A 3ne2_A* Length = 246 Back     alignment and structure
>3c02_A Aquaglyceroporin; membrane protein, glycerol, water, transport, structural GEN PSI-2, protein structure initiative; HET: BOG; 2.05A {Plasmodium falciparum} Length = 258 Back     alignment and structure
>1ldf_A Glycerol uptake facilitator protein; glycerol-conducting membrane channel protein, transport PROT; HET: BOG; 2.10A {Escherichia coli} SCOP: f.19.1.1 PDB: 1fx8_A* 1lda_A* 1ldi_A* Length = 281 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query235
3gd8_A223 Aquaporin-4; proton exclusion, structural genomics 100.0
3llq_A256 Aquaporin Z 2; aquaporin tetramer, membrane protei 100.0
2o9g_A234 Aquaporin Z; integral membrane protein, structural 100.0
3iyz_A340 Aquaporin-4; water transport, water channel, two-d 100.0
2zz9_A301 Aquaporin-4; water transport, water channel, two-d 100.0
1ldf_A281 Glycerol uptake facilitator protein; glycerol-cond 100.0
3d9s_A266 Aquaporin-5, AQP-5; aquaglyceroporin, membrane pro 100.0
2b6o_A263 Aquaporin-0, lens fiber major intrinsic protein; a 100.0
2f2b_A246 Aquaporin AQPM; protein, integral membrane protein 100.0
1j4n_A271 Aquaporin 1; membrane protein, channel protein, tr 100.0
3cn5_A304 Aquaporin; membrane protein, transmembrane, transp 100.0
2w2e_A279 AQY1, aquaporin, aquaporin PIP2-7 7; yeast, gating 100.0
3c02_A258 Aquaglyceroporin; membrane protein, glycerol, wate 100.0
2b6o_A 263 Aquaporin-0, lens fiber major intrinsic protein; a 99.59
3llq_A 256 Aquaporin Z 2; aquaporin tetramer, membrane protei 99.49
3cn5_A 304 Aquaporin; membrane protein, transmembrane, transp 99.48
3iyz_A 340 Aquaporin-4; water transport, water channel, two-d 99.46
2o9g_A 234 Aquaporin Z; integral membrane protein, structural 99.45
2zz9_A 301 Aquaporin-4; water transport, water channel, two-d 99.45
3c02_A 258 Aquaglyceroporin; membrane protein, glycerol, wate 99.45
3d9s_A 266 Aquaporin-5, AQP-5; aquaglyceroporin, membrane pro 99.45
2w2e_A 279 AQY1, aquaporin, aquaporin PIP2-7 7; yeast, gating 99.45
3gd8_A 223 Aquaporin-4; proton exclusion, structural genomics 99.44
2f2b_A 246 Aquaporin AQPM; protein, integral membrane protein 99.44
1j4n_A 271 Aquaporin 1; membrane protein, channel protein, tr 99.43
1ldf_A 281 Glycerol uptake facilitator protein; glycerol-cond 99.39
>3gd8_A Aquaporin-4; proton exclusion, structural genomics protein structure initiative, center for structures of MEMB proteins, CSMP, glycoprotein; HET: BOG; 1.80A {Homo sapiens} Back     alignment and structure
Probab=100.00  E-value=4.5e-50  Score=334.20  Aligned_cols=205  Identities=27%  Similarity=0.495  Sum_probs=164.7

Q ss_pred             CHHHHHHHHHHHHHHHHHHhhhhhcccC--C---ch----------hhHhHHHhhcCccccccchHHHHHHHHhccCCcc
Q 036381            1 VWRASLTEVLGTALLVFALDTIVISSIQ--T---DT----------IIAILLLATFPISGGHINPLVTFSAALIGHMTVT   65 (235)
Q Consensus         1 ~~r~~~~Ef~gT~~lv~~~~~~~~~~~~--~---~~----------~~~~~i~~~~~iSGah~NPavTla~~~~g~~~~~   65 (235)
                      +||++++||+||++|++.++++..+...  +   ..          ++++.+++++++||+|+|||||+++++.|+++|+
T Consensus         3 ~~r~~~aEfiGT~~lv~~g~g~~~~~~~~~~~~~~~~~~ia~~~Gl~v~~~v~~~g~iSGaHlNPAVTla~~~~g~~~~~   82 (223)
T 3gd8_A            3 FWKAVTAEFLAMLIFVLLSLGSTINWGGTEKPLPVDMVLISLCFGLSIATMVQCFGHISGGHINPAVTVAMVCTRKISIA   82 (223)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHTCCTTTTTSCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCSHHHHHHHHHTTSSCHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCCCcchHHHHHHHHHHHHHHHheecccccceEcHHHHHHHHHcCCCCHH
Confidence            4899999999999999998877653211  1   11          6778899999999999999999999999999999


Q ss_pred             chhhheeccchhHHHhhhhhhhhcccchhhhhcCCCceEEEeeccCCCCcccCCchhhHHHHHHHHHHHHHHHHHHHhhc
Q 036381           66 RAAIYILAQCVGGVFGALAPKAVVSTKIEHAFSLGGRTLIVVEQQPNGPVELGLDTGVALWLEIFCSFVFLFASMWMAFD  145 (235)
Q Consensus        66 ~~~~yi~aQ~~Ga~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~E~i~T~ilv~~~~~~~~~  145 (235)
                      +++.|+++|++||++|+.+++.+++++...  +.+.     +++.|      +.+..++++.|+++|++|+++++... |
T Consensus        83 ~~~~Yi~AQ~lGA~~ga~lv~~~~~~~~~~--~lg~-----~~~~~------~~s~~~~~~~E~i~Tf~Lv~~i~~~~-~  148 (223)
T 3gd8_A           83 KSVFYIAAQCLGAIIGAGILYLVTPPSVVG--GLGV-----TMVHG------NLTAGHGLLVELIITFQLVFTIFASC-D  148 (223)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHSCHHHHT--TTTC-----CCCCT------TSCHHHHHHHHHHHHHHHHHHHHHHT-C
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhhccccccc--ceee-----ccCCC------ccCHHHHHHHHHHHHHHHHHHHHHHh-c
Confidence            999999999999999999999998865422  1221     12222      46889999999999999999988654 5


Q ss_pred             chhhhhhhhhhHHHHHHHHHHHHHHHHhhhccCCCCCCCCcCcchhhhhHHhhCCCCCCceeeeehhHHHHHHHHHHHHH
Q 036381          146 ERQAKALARVSVCIILGVVLGLLIFVSTTVTAQKGYGGAGRNPARCLGPAFVRGGHLWDRHWVFWAGPATACVAFALYIK  225 (235)
Q Consensus       146 ~~~~~~~~~~~~~~~ig~~~~~~v~~~~~~~~~~~~sG~~lNPAr~lg~a~~~g~~~~~~~wvy~v~p~~Ga~~a~~~~~  225 (235)
                      +++....  ...|+.+|+.+++....+.      ++||++||||||||||++.+  +|+++|+||++|++|+++++++||
T Consensus       149 ~~~~~~~--~~~pl~iGl~v~~~~~~g~------~~TG~a~NPAR~~GP~l~~~--~w~~~Wvy~vgP~~Ga~la~~~y~  218 (223)
T 3gd8_A          149 SKRTDVT--GSIALAIGFSVAIGHLFAI------NYTGASMNPARSFGPAVIMG--NWENHWIYWVGPIIGAVLAGGLYE  218 (223)
T ss_dssp             TTCSCCC--SCHHHHHHHHHHHHHHHHH------HHHCCCCCHHHHHHHHHHHT--CCTTTTHHHHHHHHHHHHHHHHHH
T ss_pred             cccCCcc--CCccHHHHHHHHHHHHhcc------CCccccccHHHHHHHHHHhc--CCCcEEeehhHHHHHHHHHHHHHH
Confidence            4433211  2346777777655444432      57899999999999999987  799999999999999999999999


Q ss_pred             HhcC
Q 036381          226 LIPS  229 (235)
Q Consensus       226 ~l~~  229 (235)
                      ++..
T Consensus       219 ~~~~  222 (223)
T 3gd8_A          219 YVFC  222 (223)
T ss_dssp             HTTC
T ss_pred             HHcC
Confidence            8875
>3llq_A Aquaporin Z 2; aquaporin tetramer, membrane protein, water channel, structu genomics, PSI-2, protein structure initiative; 2.01A {Agrobacterium tumefaciens str} Back     alignment and structure
>2o9g_A Aquaporin Z; integral membrane protein, structural genomics, P protein structure initiative, center for structures of MEMB proteins, CSMP; HET: BOG; 1.90A {Escherichia coli} PDB: 2o9f_A* 2o9d_A* 2o9e_A 1rc2_B* 2abm_A* 3nk5_A* 3nka_A* 3nkc_A* Back     alignment and structure
>3iyz_A Aquaporin-4; water transport, water channel, two-dimensional C membrane protein, baculovirus expression system, glycoprote membrane; 10.00A {Rattus norvegicus} Back     alignment and structure
>2zz9_A Aquaporin-4; water transport, water channel, two-dimensional crystal, electron diffraction, electron microscopy, membrane protein; HET: PEE; 2.80A {Rattus norvegicus} PDB: 2d57_A Back     alignment and structure
>1ldf_A Glycerol uptake facilitator protein; glycerol-conducting membrane channel protein, transport PROT; HET: BOG; 2.10A {Escherichia coli} SCOP: f.19.1.1 PDB: 1fx8_A* 1lda_A* 1ldi_A* Back     alignment and structure
>3d9s_A Aquaporin-5, AQP-5; aquaglyceroporin, membrane protein, water transport, X-RAY diffraction, lipid, phosphatidylserine, PSF, NPA, AR/R, water channel; HET: PS6; 2.00A {Homo sapiens} Back     alignment and structure
>2b6o_A Aquaporin-0, lens fiber major intrinsic protein; aquaporin-0 junctions, AQP0, lens MIP, lipid-protein interac membrane, lipid bilayer; HET: MC3; 1.90A {Ovis aries} SCOP: f.19.1.1 PDB: 1ymg_A* 2b6p_A 2c32_A 1sor_A 3m9i_A* Back     alignment and structure
>2f2b_A Aquaporin AQPM; protein, integral membrane protein, channel, structural GENO PSI-2, protein structure initiative; 1.68A {Methanothermobacter marburgensis str} PDB: 2evu_A 3ne2_A* Back     alignment and structure
>1j4n_A Aquaporin 1; membrane protein, channel protein, transmembrane helices; HET: BNG; 2.20A {Bos taurus} SCOP: f.19.1.1 PDB: 1h6i_A 1fqy_A 1ih5_A Back     alignment and structure
>3cn5_A Aquaporin; membrane protein, transmembrane, transport, transport protein; 2.05A {Spinacia oleracea} PDB: 3cn6_A 3cll_A 1z98_A 2b5f_A Back     alignment and structure
>2w2e_A AQY1, aquaporin, aquaporin PIP2-7 7; yeast, gating, membrane protein; HET: BOG; 1.15A {Komagataella pastoris} PDB: 2w1p_A* Back     alignment and structure
>3c02_A Aquaglyceroporin; membrane protein, glycerol, water, transport, structural GEN PSI-2, protein structure initiative; HET: BOG; 2.05A {Plasmodium falciparum} Back     alignment and structure
>2b6o_A Aquaporin-0, lens fiber major intrinsic protein; aquaporin-0 junctions, AQP0, lens MIP, lipid-protein interac membrane, lipid bilayer; HET: MC3; 1.90A {Ovis aries} SCOP: f.19.1.1 PDB: 1ymg_A* 2b6p_A 2c32_A 1sor_A 3m9i_A* Back     alignment and structure
>3llq_A Aquaporin Z 2; aquaporin tetramer, membrane protein, water channel, structu genomics, PSI-2, protein structure initiative; 2.01A {Agrobacterium tumefaciens str} Back     alignment and structure
>3cn5_A Aquaporin; membrane protein, transmembrane, transport, transport protein; 2.05A {Spinacia oleracea} PDB: 3cn6_A 3cll_A 1z98_A 2b5f_A Back     alignment and structure
>3iyz_A Aquaporin-4; water transport, water channel, two-dimensional C membrane protein, baculovirus expression system, glycoprote membrane; 10.00A {Rattus norvegicus} Back     alignment and structure
>2o9g_A Aquaporin Z; integral membrane protein, structural genomics, P protein structure initiative, center for structures of MEMB proteins, CSMP; HET: BOG; 1.90A {Escherichia coli} PDB: 2o9f_A* 2o9d_A* 2o9e_A 1rc2_B* 2abm_A* 3nk5_A* 3nka_A* 3nkc_A* Back     alignment and structure
>2zz9_A Aquaporin-4; water transport, water channel, two-dimensional crystal, electron diffraction, electron microscopy, membrane protein; HET: PEE; 2.80A {Rattus norvegicus} PDB: 2d57_A Back     alignment and structure
>3c02_A Aquaglyceroporin; membrane protein, glycerol, water, transport, structural GEN PSI-2, protein structure initiative; HET: BOG; 2.05A {Plasmodium falciparum} Back     alignment and structure
>3d9s_A Aquaporin-5, AQP-5; aquaglyceroporin, membrane protein, water transport, X-RAY diffraction, lipid, phosphatidylserine, PSF, NPA, AR/R, water channel; HET: PS6; 2.00A {Homo sapiens} Back     alignment and structure
>2w2e_A AQY1, aquaporin, aquaporin PIP2-7 7; yeast, gating, membrane protein; HET: BOG; 1.15A {Komagataella pastoris} PDB: 2w1p_A* Back     alignment and structure
>3gd8_A Aquaporin-4; proton exclusion, structural genomics protein structure initiative, center for structures of MEMB proteins, CSMP, glycoprotein; HET: BOG; 1.80A {Homo sapiens} Back     alignment and structure
>2f2b_A Aquaporin AQPM; protein, integral membrane protein, channel, structural GENO PSI-2, protein structure initiative; 1.68A {Methanothermobacter marburgensis str} PDB: 2evu_A 3ne2_A* Back     alignment and structure
>1j4n_A Aquaporin 1; membrane protein, channel protein, transmembrane helices; HET: BNG; 2.20A {Bos taurus} SCOP: f.19.1.1 PDB: 1h6i_A 1fqy_A 1ih5_A Back     alignment and structure
>1ldf_A Glycerol uptake facilitator protein; glycerol-conducting membrane channel protein, transport PROT; HET: BOG; 2.10A {Escherichia coli} SCOP: f.19.1.1 PDB: 1fx8_A* 1lda_A* 1ldi_A* Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 235
d1ymga1234 f.19.1.1 (A:6-239) Aquaporin-0 {Cow (Bos taurus) [ 2e-18
d1j4na_249 f.19.1.1 (A:) Aquaporin-1 {Cow (Bos taurus) [TaxId 1e-17
d1rc2a_231 f.19.1.1 (A:) Aquaporin Z {Escherichia coli [TaxId 5e-17
d1fx8a_254 f.19.1.1 (A:) Glycerol uptake facilitator protein 1e-14
>d1ymga1 f.19.1.1 (A:6-239) Aquaporin-0 {Cow (Bos taurus) [TaxId: 9913]} Length = 234 Back     information, alignment and structure

class: Membrane and cell surface proteins and peptides
fold: Aquaporin-like
superfamily: Aquaporin-like
family: Aquaporin-like
domain: Aquaporin-0
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 78.6 bits (193), Expect = 2e-18
 Identities = 62/237 (26%), Positives = 96/237 (40%), Gaps = 35/237 (14%)

Query: 2   WRASLTEVLGTALLVFALDTIVISSIQTDT-----------IIAILLLATFPISGGHINP 50
           WRA   E   +   VF      +                   +A L+ A   ISG H+NP
Sbjct: 5   WRAICAEFFASLFYVFFGLGASLRWAPGPLHVLQVALAFGLALATLVQAVGHISGAHVNP 64

Query: 51  LVTFSAALIGHMTVTRAAIYILAQCVGGVFGALAPKAVVSTKIEHAFSLGGRTLIVVEQQ 110
            VTF+  +   M++ RA  Y++AQ +G V GA    +V    +    +L           
Sbjct: 65  AVTFAFLVGSQMSLLRAICYMVAQLLGAVAGAAVLYSVTPPAVRGNLALNT--------- 115

Query: 111 PNGPVELGLDTGVALWLEIFCSFVFLFASMWMAFDERQAKALARVSVCIILGVVLGLLIF 170
               +  G+  G A  +EIF +  F+   ++  +DER+   L  V++ +   + LG L  
Sbjct: 116 ----LHPGVSVGQATIVEIFLTLQFVLC-IFATYDERRNGRLGSVALAVGFSLTLGHLFG 170

Query: 171 VSTTVTAQKGYGGAGRNPARCLGPAFVRGGHLWDRHWVFWAGPATACVAFALYIKLI 227
           +  T        GAG NPAR   PA +     +  HWV+W GP       +L    +
Sbjct: 171 MYYT--------GAGMNPARSFAPAILTRN--FTNHWVYWVGPVIGAGLGSLLYDFL 217
>d1j4na_ f.19.1.1 (A:) Aquaporin-1 {Cow (Bos taurus) [TaxId: 9913]} Length = 249 Back     information, alignment and structure
>d1rc2a_ f.19.1.1 (A:) Aquaporin Z {Escherichia coli [TaxId: 562]} Length = 231 Back     information, alignment and structure
>d1fx8a_ f.19.1.1 (A:) Glycerol uptake facilitator protein GlpF {Escherichia coli [TaxId: 562]} Length = 254 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query235
d1fx8a_254 Glycerol uptake facilitator protein GlpF {Escheric 100.0
d1ymga1234 Aquaporin-0 {Cow (Bos taurus) [TaxId: 9913]} 100.0
d1rc2a_231 Aquaporin Z {Escherichia coli [TaxId: 562]} 100.0
d1j4na_249 Aquaporin-1 {Cow (Bos taurus) [TaxId: 9913]} 100.0
d1ymga1 234 Aquaporin-0 {Cow (Bos taurus) [TaxId: 9913]} 99.52
d1rc2a_ 231 Aquaporin Z {Escherichia coli [TaxId: 562]} 99.44
d1j4na_ 249 Aquaporin-1 {Cow (Bos taurus) [TaxId: 9913]} 99.34
d1fx8a_ 254 Glycerol uptake facilitator protein GlpF {Escheric 99.27
>d1fx8a_ f.19.1.1 (A:) Glycerol uptake facilitator protein GlpF {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
class: Membrane and cell surface proteins and peptides
fold: Aquaporin-like
superfamily: Aquaporin-like
family: Aquaporin-like
domain: Glycerol uptake facilitator protein GlpF
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=1.1e-49  Score=336.81  Aligned_cols=220  Identities=20%  Similarity=0.208  Sum_probs=174.4

Q ss_pred             CHHHHHHHHHHHHHHHHHHhhhhhcc----cCCch---------hhHhHHHhhcCccccccchHHHHHHHHhccCCccch
Q 036381            1 VWRASLTEVLGTALLVFALDTIVISS----IQTDT---------IIAILLLATFPISGGHINPLVTFSAALIGHMTVTRA   67 (235)
Q Consensus         1 ~~r~~~~Ef~gT~~lv~~~~~~~~~~----~~~~~---------~~~~~i~~~~~iSGah~NPavTla~~~~g~~~~~~~   67 (235)
                      +-|++++||+||++|+|.++++....    ...+.         ++++++++++++||||+|||||+++++.||+++.+.
T Consensus         2 l~~~~lAEflGT~~lvf~g~g~~~~~~~~~~~~~~~~ia~~~g~~v~~~i~~~g~vSGaH~NPAVTla~~i~g~~~~~~~   81 (254)
T d1fx8a_           2 LKGQCIAEFLGTGLLIFFGVGCVAALKVAGASFGQWEISVIWGLGVAMAIYLTAGVSGAHLNPAVTIALWLFACFDKRKV   81 (254)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCSHHHHHHHHHHSCCCGGGH
T ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHhccccCCCcchHHHHHHHHHHHHHHHHHHhccccceEChhhHHHHHHcCCCcHHHh
Confidence            35899999999999999877654321    11111         677889999999999999999999999999999999


Q ss_pred             hhheeccchhHHHhhhhhhhhcccchhhhhcCCCc---------eEEEeeccCCCCcccCCchhhHHHHHHHHHHHHHHH
Q 036381           68 AIYILAQCVGGVFGALAPKAVVSTKIEHAFSLGGR---------TLIVVEQQPNGPVELGLDTGVALWLEIFCSFVFLFA  138 (235)
Q Consensus        68 ~~yi~aQ~~Ga~~g~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~p~~~~~~~~~~~~~~~~E~i~T~ilv~~  138 (235)
                      +.|+++|++||++|+++.+.++++...+.......         ..+.+++.|++    +.+..++++.|+++|++|+++
T Consensus        82 ~~Yi~aQ~lGa~~ga~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~p~~----~~s~~~~~~~E~v~Tf~lv~~  157 (254)
T d1fx8a_          82 IPFIVSQVAGAFCAAALVYGLYYNLFFDFEQTHHIVRGSVESVDLAGTFSTYPNP----HINFVQAFAVEMVITAILMGL  157 (254)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCTTSGGGHHHHTTTSCCCCT----TCCHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhhhhhhccccccccCCccchhhcceeecCCCc----cccHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999988766543221100         01223445654    578999999999999999999


Q ss_pred             HHHHhhcchhhhhhhhhhHHHHHHHHHHHHHHHHhhhccCCCCCCCCcCcchhhhhHHhh-----------CCCCCCcee
Q 036381          139 SMWMAFDERQAKALARVSVCIILGVVLGLLIFVSTTVTAQKGYGGAGRNPARCLGPAFVR-----------GGHLWDRHW  207 (235)
Q Consensus       139 ~~~~~~~~~~~~~~~~~~~~~~ig~~~~~~v~~~~~~~~~~~~sG~~lNPAr~lg~a~~~-----------g~~~~~~~w  207 (235)
                      ++....|+|+.+.  ....|+.+|+.+...+....      ++||++||||||||||++.           ++++|+|+|
T Consensus       158 il~~~~~~~~~~~--~~~~~l~iG~~v~~~~~~~g------~~TG~s~NPAR~lgpai~~~~~~~~~~~~~~~~~~~~~w  229 (254)
T d1fx8a_         158 ILALTDDGNGVPR--GPLAPLLIGLLIAVIGASMG------PLTGFAMNPARDFGPKVFAWLAGWGNVAFTGGRDIPYFL  229 (254)
T ss_dssp             HHHHHCTTSSSCC--GGGHHHHHHHHHHHHHHHHH------HHHCCCCCHHHHHHHHHHHHHTTTTTHHHHTTCSSCTTH
T ss_pred             HHHHhcCccCCCc--ccccchHHHHHHHHHHhhcc------cccccccChHHHHHHHHHHhhcccccccccCCCCCCeee
Confidence            8876655443222  22346777777776665543      6789999999999999985           346899999


Q ss_pred             eeehhHHHHHHHHHHHHHHhcCCCC
Q 036381          208 VFWAGPATACVAFALYIKLIPSQHL  232 (235)
Q Consensus       208 vy~v~p~~Ga~~a~~~~~~l~~~~~  232 (235)
                      |||++|++|+++++++||++..+|+
T Consensus       230 vy~vgP~~Ga~ia~~~y~~l~~~~l  254 (254)
T d1fx8a_         230 VPLFGPIVGAIVGAFAYRKLIGRHL  254 (254)
T ss_dssp             HHHHTTHHHHHHHHHHHHHHTGGGC
T ss_pred             hHhHHHHHHHHHHHHHHHHHHhhhC
Confidence            9999999999999999999998874
>d1ymga1 f.19.1.1 (A:6-239) Aquaporin-0 {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
>d1rc2a_ f.19.1.1 (A:) Aquaporin Z {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1j4na_ f.19.1.1 (A:) Aquaporin-1 {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
>d1ymga1 f.19.1.1 (A:6-239) Aquaporin-0 {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
>d1rc2a_ f.19.1.1 (A:) Aquaporin Z {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1j4na_ f.19.1.1 (A:) Aquaporin-1 {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
>d1fx8a_ f.19.1.1 (A:) Glycerol uptake facilitator protein GlpF {Escherichia coli [TaxId: 562]} Back     information, alignment and structure