Citrus Sinensis ID: 036394

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80
Protein Sequence
MDDEIKQQRICYIIMFCLFSLAFCLRRLSKENRAVGVLENFAEGKEFSEHFLRLYVHNKTPEIMPKICFFVDPNYDCPEP
Secondary Structure (PSIPRED)
ccHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccHHHHHHHHHHHHHHHHHccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
ccHHHHHHHHHHHHHHHHHHHHHHHHHHcHHcccccHHccHHHHHHHHHHHHHHHHcccccccccccccccccccccccc
Coil and Loop (DISEMBL)
MDDEIKQQRICYIIMFCLFSLAFCLRRLSKENRAVGVLenfaegkefSEHFLRLYvhnktpeimpkicffvdpnydcpep
Flexible Loop (DISEMBL)
MDDEIKQQRICYIIMFCLFSLAFCLRRLSKENRAVGVLenfaegkefseHFLRLYVHNKTPEIMPKICFFVDPNYDCPEP
Low Complexity Region (SEG)
MDDEIKQQRICYIIMFCLFSLAFCLRRLSKENRAVGVLENFAEGKEFSEHFLRLYVHNKTPEIMPKICFFVDPNYDCPEP
Disordered region (IsUnstruct)
*******QRICYIIMFCLFSLAFCLRRLSKENRAVGVLENFAEGKEFSEHFLRLYVHNKTPEIMPKICFFVDPNY*****
Disordered Region (DISOPRED)
********RICYIIMFCLFSLAFCLRRLSKENRAVGVLENFAEGKEFSEHFLRLYVHNKTPEIMPKICFFVD********
Disordered Region (DISEMBL)
MDDEIKQQRICYIIMFCLFSLAFCLRRLSKENRAVGVLENFAEGKEFSEHFLRLYVHNKTPEIMPKICFFVDPNYDCPEP
Disordered Region (DISPRO)
MDDEIKQQRICYIIMFCLFSLAFCLRRLSKENRAVGVLENFAEGKEFSEHFLRLYVHNKTPEIMPKICFFVDPNYDCP*P
Transmembrane Helix (TMHMM)
oooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (HMMTOP)
iiiiiiiiiHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oohhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
SSSSSSSSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MDDEIKQQRICYIIMFCLFSLAFCLRRLSKENRAVGVLENFAEGKEFSEHFLRLYVHNKTPEIMPKICFFVDPNYDCPEP
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	80
225457158	93	PREDICTED: uncharacterized protein LOC10	0.587	0.505	0.729	6e-12
297733849	88	unnamed protein product [Vitis vinifera]	0.587	0.534	0.729	1e-11
449469495	94	PREDICTED: uncharacterized protein LOC10	0.625	0.531	0.666	1e-11
99646724	91	B12D-like protein [Beta vulgaris]	0.575	0.505	0.723	2e-11
440808091	93	unknown [Rehmannia glutinosa]	0.612	0.526	0.6	2e-10
356516716	89	PREDICTED: uncharacterized protein LOC10	0.625	0.561	0.627	2e-10
255540809	88	conserved hypothetical protein [Ricinus	0.6	0.545	0.653	6e-10
255630577	89	unknown [Glycine max]	0.837	0.752	0.479	8e-10
356508630	89	PREDICTED: uncharacterized protein LOC10	0.625	0.561	0.607	1e-09
224100067	92	predicted protein [Populus trichocarpa]	0.6	0.521	0.612	2e-09

>gi|225457158|ref|XP_002283743.1| PREDICTED: uncharacterized protein LOC100263922 [Vitis vinifera]

 Score = 74.7 bits (182), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 35/48 (72%), Positives = 40/48 (83%), Gaps = 1/48 (2%)

Query: 27 RLSKENRAVGVLENFAEGKEFSEHFLRLYVHNKTPEIMPKI-CFFVDP 73
          R+SKENRA GVLENF EG+++SEHFLR YV NK+PEIMP I  FF DP
Sbjct: 43 RVSKENRAAGVLENFTEGQKYSEHFLRKYVRNKSPEIMPSINSFFSDP 90

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297733849|emb|CBI15096.3| unnamed protein product [Vitis vinifera]

 Score = 74.3 bits (181), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 35/48 (72%), Positives = 40/48 (83%), Gaps = 1/48 (2%)

Query: 27 RLSKENRAVGVLENFAEGKEFSEHFLRLYVHNKTPEIMPKI-CFFVDP 73
          R+SKENRA GVLENF EG+++SEHFLR YV NK+PEIMP I  FF DP
Sbjct: 38 RVSKENRAAGVLENFTEGQKYSEHFLRKYVRNKSPEIMPSINSFFSDP 85

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449469495|ref|XP_004152455.1| PREDICTED: uncharacterized protein LOC101218501 [Cucumis sativus] gi|449487788|ref|XP_004157801.1| PREDICTED: uncharacterized LOC101218501 [Cucumis sativus]

 Score = 73.9 bits (180), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 34/51 (66%), Positives = 43/51 (84%), Gaps = 1/51 (1%)

Query: 27 RLSKENRAVGVLENFAEGKEFSEHFLRLYVHNKTPEIMPKI-CFFVDPNYD 76
          R++KENRA GVL+NFAEG+++SEHFLR +V NK+PEIMP I  FF DPN +
Sbjct: 44 RVTKENRAAGVLDNFAEGEKYSEHFLRKFVRNKSPEIMPSINNFFTDPNRN 94

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|99646724|emb|CAK22419.1| B12D-like protein [Beta vulgaris]

 Score = 73.2 bits (178), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 34/47 (72%), Positives = 40/47 (85%), Gaps = 1/47 (2%)

Query: 27 RLSKENRAVGVLENFAEGKEFSEHFLRLYVHNKTPEIMPKI-CFFVD 72
          R+SKENRA GVLENF+EG++++EHFLR YV NKTPEIMP I  FF D
Sbjct: 41 RVSKENRAAGVLENFSEGEKYAEHFLRKYVRNKTPEIMPSINSFFAD 87

Source: Beta vulgaris

Species: Beta vulgaris

Genus: Beta

Family: Amaranthaceae

Order: Caryophyllales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|440808091|gb|AGC24177.1| unknown [Rehmannia glutinosa]

 Score = 70.1 bits (170), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 30/50 (60%), Positives = 41/50 (82%), Gaps = 1/50 (2%)

Query: 27 RLSKENRAVGVLENFAEGKEFSEHFLRLYVHNKTPEIMPKI-CFFVDPNY 75
          R++KENRA GVL++FAEG++++EH LR YV N++PEIMP +  FF DP Y
Sbjct: 44 RVTKENRAAGVLDDFAEGEKYAEHALRKYVRNRSPEIMPSLNSFFTDPKY 93

Source: Rehmannia glutinosa

Species: Rehmannia glutinosa

Genus: Rehmannia

Order: Lamiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356516716|ref|XP_003527039.1| PREDICTED: uncharacterized protein LOC100499787 [Glycine max]

 Score = 70.1 bits (170), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 32/51 (62%), Positives = 41/51 (80%), Gaps = 1/51 (1%)

Query: 27 RLSKENRAVGVLENFAEGKEFSEHFLRLYVHNKTPEIMPKI-CFFVDPNYD 76
          R++KE R  GVLENFAEG++++EHFLR YV N+TPEIMP I  FF DP+ +
Sbjct: 39 RVNKEGRKAGVLENFAEGEKYAEHFLRKYVRNRTPEIMPSINSFFADPSRN 89

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255540809|ref|XP_002511469.1| conserved hypothetical protein [Ricinus communis] gi|223550584|gb|EEF52071.1| conserved hypothetical protein [Ricinus communis]

 Score = 68.2 bits (165), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 32/49 (65%), Positives = 41/49 (83%), Gaps = 1/49 (2%)

Query: 27 RLSKENRAVGVLENFAEGKEFSEHFLRLYVHNKTPEIMPKIC-FFVDPN 74
          R++K+NRA GVLENF EG+++SE+FLR +V NKTPEIMP I  FF +PN
Sbjct: 40 RVNKQNRAAGVLENFKEGEKYSENFLRKFVRNKTPEIMPSINRFFTEPN 88

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255630577|gb|ACU15648.1| unknown [Glycine max]

 Score = 67.8 bits (164), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 35/73 (47%), Positives = 48/73 (65%), Gaps = 6/73 (8%)

Query: 10 ICYIIMFCLFSL--AFCLR---RLSKENRAVGVLENFAEGKEFSEHFLRLYVHNKTPEIM 64
          +   +  C F L  + C+    R++KE R  GVLENFAEG++++EHFLR YV N+TPEIM
Sbjct: 17 VGAAVGICGFQLVRSICINPEVRVNKEGRKAGVLENFAEGEKYAEHFLRKYVRNRTPEIM 76

Query: 65 PKI-CFFVDPNYD 76
          P I  FF D + +
Sbjct: 77 PSINSFFADTSRN 89

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356508630|ref|XP_003523058.1| PREDICTED: uncharacterized protein LOC100500534 [Glycine max]

 Score = 67.4 bits (163), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 31/51 (60%), Positives = 40/51 (78%), Gaps = 1/51 (1%)

Query: 27 RLSKENRAVGVLENFAEGKEFSEHFLRLYVHNKTPEIMPKI-CFFVDPNYD 76
          R++KE R  GVLENFAEG++++EHFLR YV N+TPEIMP I  FF D + +
Sbjct: 39 RVNKEGRKAGVLENFAEGEKYAEHFLRKYVRNRTPEIMPSINSFFADTSRN 89

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224100067|ref|XP_002311729.1| predicted protein [Populus trichocarpa] gi|222851549|gb|EEE89096.1| predicted protein [Populus trichocarpa]

 Score = 66.2 bits (160), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 30/49 (61%), Positives = 40/49 (81%), Gaps = 1/49 (2%)

Query: 27 RLSKENRAVGVLENFAEGKEFSEHFLRLYVHNKTPEIMPKI-CFFVDPN 74
          R++KENRA GVL+NF EG++++EH LR +V NKTP+IMP I  FF DP+
Sbjct: 40 RVTKENRAAGVLDNFKEGEKYAEHGLRKFVRNKTPQIMPSINGFFSDPD 88

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	80
TAIR|locus:2100484	88	AT3G48140 "AT3G48140" [Arabido	0.612	0.556	0.58	3.5e-11
TAIR|locus:2829357	87	AT3G29970 "AT3G29970" [Arabido	0.512	0.471	0.390	5.5e-06

TAIR|locus:2100484 AT3G48140 "AT3G48140" [Arabidopsis thaliana (taxid:3702)]

 Score = 154 (59.3 bits), Expect = 3.5e-11, P = 3.5e-11
 Identities = 29/50 (58%), Positives = 38/50 (76%)

Query:    27 RLSKENRAVGVLENFAEGKEFSEHFLRLYVHNKTPEIMPKIC-FFVDPNY 75
             R +KENRA G+L+N AEG+++ E+FLR +V NK PEIMP +  FF DP Y
Sbjct:    39 RCTKENRAAGILDNHAEGEKYKENFLRKFVRNKKPEIMPGLNKFFTDPTY 88

GO:0003674 "molecular_function" evidence=ND

GO:0005739 "mitochondrion" evidence=ISM

GO:0010150 "leaf senescence" evidence=ISS

GO:0005777 "peroxisome" evidence=IDA

TAIR|locus:2829357 AT3G29970 "AT3G29970" [Arabidopsis thaliana (taxid:3702)]

 Score = 105 (42.0 bits), Expect = 5.5e-06, P = 5.5e-06
 Identities = 16/41 (39%), Positives = 31/41 (75%)

Query:    27 RLSKENRAVGVLENFAEGKEFSEHFLRLYVHNKTPEIMPKI 67
             R++KE+R +G+LEN  EG+++++H  R Y+  + P++MP +
Sbjct:    38 RINKEHRKMGILENKDEGEKYAQHNFRKYLRTRQPQVMPSL 78


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.330   0.145   0.469    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0       80        80   0.00091  102 3  11 21  0.47    28
                                                     29  0.41    30


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  2
  No. of states in DFA:  530 (56 KB)
  Total size of DFA:  109 KB (2074 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  10.10u 0.11s 10.21t   Elapsed:  00:00:00
  Total cpu time:  10.10u 0.11s 10.21t   Elapsed:  00:00:00
  Start:  Sat May 11 14:14:42 2013   End:  Sat May 11 14:14:42 2013

GO:0003674 "molecular_function" evidence=ND

GO:0005739 "mitochondrion" evidence=ISM

GO:0008150 "biological_process" evidence=ND

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Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

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Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

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Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	80
PF06522	73	B12D: NADH-ubiquinone reductase complex 1 MLRQ sub	99.31

>PF06522 B12D: NADH-ubiquinone reductase complex 1 MLRQ subunit; InterPro: IPR010530 The MLRQ subunit of mitochondrial NADH-ubiquinone reductase complex I is nuclear [] and is found in plants [], insects, fungi and higher metazoans []

Probab=99.31  E-value=8.8e-13  Score=83.57  Aligned_cols=57  Identities=21%  Similarity=0.176  Sum_probs=51.9

Q ss_pred             HHHHHHHHHHHHHhhh--hee---EEeeccccccccccchhhhhhhhhhHHHHHhhcCCCcccccc-ccCCC
Q 036394            7 QQRICYIIMFCLFSLA--FCL---RRLSKENRAVGVLENFAEGKEFSEHFLRLYVHNKTPEIMPKI-CFFVD   72 (80)
Q Consensus         7 ~~A~g~avgiC~fql~--i~~---VRv~K~~RaagvLeN~~EGekY~eH~lRrfvr~r~PeImP~i-~fFs~   72 (80)
                      -++||+|+|+|+|+++  ++.   |+++|++|       .++|++|++|..|||++.+. +|||.+ ++ +|
T Consensus        10 ~~~vg~a~~~a~~~~~r~l~~~PdV~~~k~~~-------~~pw~~~~~~~~~K~~~~~~-~~~~~~~~~-pd   72 (73)
T PF06522_consen   10 FVIVGVAVGGATFYLYRLLLTNPDVRWNKKNR-------PEPWEKYKPHEQRKFYSINQ-DYMPLKNNF-PD   72 (73)
T ss_pred             HHHHHHHHHHHHHHHHHHHhcCCCeEEEecCC-------cChhhhcCccccEEeecccc-ccccccccC-CC
Confidence            3789999999999999  545   99999998       89999999999999999999 999999 65 65

It appears to act within the membrane and, in mammals, is highly expressed in muscle and neural tissue, indicative of a role in ATP generation [].

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Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

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Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00