Citrus Sinensis ID: 036400

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------20
MYVSGENKAGNPELIQKEVLEKYAKVLPPFYSVIVRRSDASTLHWAPLMFRHPWNVFFGNLSKGNVTVAGDAMHPMTPDLGQGGCQALEDAVVLGRHIGNLLIKTKGHIATTGDNNVAQAIDGYVKERKWRVTGLVIGSYLSGWVQDGGSNWWMRFLRDVIFYRFLVGGVLGNKVTGYDCGKLPDVSLGEMDNPCKID
ccccccccccccHHHHHHHHHHHHccccHHHHHHHHcccccccccccccccccccccccccccccEEEEcccccccccccccHHHHHHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccc
ccccccccccccHHcHHHHHHHHHccccHHHHHHHHHccHHHHHHccHcccccccEEEcccccccEEEEccccccccccccHHHHHHHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHccccHccccccccccccccccccccccccc
myvsgenkagnpeLIQKEVLEKYAKVLPPFYSVIVrrsdastlhwaplmfrhpwnvffgnlskgnvtvagdamhpmtpdlgqggcQALEDAVVLGRHIGNLLIktkghiattgdnnVAQAIDGYVKERKWRVTGLVIGSYLSgwvqdggsnwWMRFLRDVIFYRFLVGGvlgnkvtgydcgklpdvslgemdnpckid
myvsgenkagnpelIQKEVLEKYAKVLPPFYSVIVRRSDASTLHWAPLMFRHPWNVFFGNLSKGNVTVAGDAMHPMTPDLGQGGCQALEDAVVLGRHIGNLLIKTkghiattgdnnvAQAIDGYVKERKWRVTGLVIGSYLSGWVQDGGSNWWMRFLRDVIFYRFLVGGvlgnkvtgydcgklpdvslgemdnpckid
MYVSGENKAGNPELIQKEVLEKYAKVLPPFYSVIVRRSDASTLHWAPLMFRHPWNVFFGNLSKGNVTVAGDAMHPMTPDLGQGGCQALEDAVVLGRHIGNLLIKTKGHIATTGDNNVAQAIDGYVKERKWRVTGLVIGSYLSGWVQDGGSNWWMRFLRDVIFYRFLVGGVLGNKVTGYDCGKLPDVSLGEMDNPCKID
**************IQKEVLEKYAKVLPPFYSVIVRRSDASTLHWAPLMFRHPWNVFFGNLSKGNVTVAGDAMHPMTPDLGQGGCQALEDAVVLGRHIGNLLIKTKGHIATTGDNNVAQAIDGYVKERKWRVTGLVIGSYLSGWVQDGGSNWWMRFLRDVIFYRFLVGGVLGNKVTGYDCGKLPDV************
MYVS***KAGNPELIQKEVLEKYAKVLPPFYSVIVRRSDASTLHWAPLMFRHPWNVFFGNLSKGNVTVAGDAMHPMTPDLGQGGCQALEDAVVLGRHIGNLLIKTKGHI**TGDNNVAQAIDGYVKERKWRVTGLVIGSYLSGWVQDGGSNWWMRFLRDVIFYRFLVGGVLGNKVTGYDCGKLPDVS***********
*********GNPELIQKEVLEKYAKVLPPFYSVIVRRSDASTLHWAPLMFRHPWNVFFGNLSKGNVTVAGDAMHPMTPDLGQGGCQALEDAVVLGRHIGNLLIKTKGHIATTGDNNVAQAIDGYVKERKWRVTGLVIGSYLSGWVQDGGSNWWMRFLRDVIFYRFLVGGVLGNKVTGYDCGKLPDVSLGEMDNPCKID
MYVSGENKAGNPELIQKEVLEKYAKVLPPFYSVIVRRSDASTLHWAPLMFRHPWNVFFGNLSKGNVTVAGDAMHPMTPDLGQGGCQALEDAVVLGRHIGNLLIKTKG***TTGDNNVAQAIDGYVKERKWRVTGLVIGSYLSGWVQDGGSNWWMRFLRDVIFYRFLVGGVLGNKVTGYDCGKLPDV************
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MYVSGENKAGNPELIQKEVLEKYAKVLPPFYSVIVRRSDASTLHWAPLMFRHPWNVFFGNLSKGNVTVAGDAMHPMTPDLGQGGCQALEDAVVLGRHIGNLLIKTKGHIATTGDNNVAQAIDGYVKERKWRVTGLVIGSYLSGWVQDGGSNWWMRFLRDVIFYRFLVGGVLGNKVTGYDCGKLPDVSLGEMDNPCKID
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query198 2.2.26 [Sep-21-2011]
A6T923384 FAD-dependent urate hydro yes no 0.494 0.255 0.339 2e-07
B6D1N4384 FAD-dependent urate hydro yes no 0.494 0.255 0.339 3e-07
B5B0J6384 FAD-dependent urate hydro yes no 0.338 0.174 0.412 5e-07
Q9FGC7 667 Zeaxanthin epoxidase, chl no no 0.343 0.101 0.366 2e-06
Q40412 663 Zeaxanthin epoxidase, chl N/A no 0.333 0.099 0.380 7e-06
Q0JCU7 659 Zeaxanthin epoxidase, chl no no 0.353 0.106 0.4 1e-05
O81360 661 Zeaxanthin epoxidase, chl N/A no 0.343 0.102 0.366 1e-05
Q96375 660 Zeaxanthin epoxidase, chl N/A no 0.333 0.1 0.408 3e-05
Q88FY2382 6-hydroxynicotinate 3-mon yes no 0.611 0.316 0.273 5e-05
Q3S4B7400 3-hydroxybenzoate 6-hydro yes no 0.383 0.19 0.318 7e-05
>sp|A6T923|HPXO_KLEP7 FAD-dependent urate hydroxylase OS=Klebsiella pneumoniae subsp. pneumoniae (strain ATCC 700721 / MGH 78578) GN=hpxO PE=1 SV=1 Back     alignment and function desciption
 Score = 55.8 bits (133), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 39/115 (33%), Positives = 57/115 (49%), Gaps = 17/115 (14%)

Query: 58  FGNLSKGNVTVAGDAMHPMTPDLGQGGCQALEDAVVLGRHIGNLLIKTKGHIATTGDNNV 117
           F  L +G V + GDA H  TPD+GQGGC A+EDAVVL    G +  +T+         ++
Sbjct: 272 FSRLVRGRVALLGDAGHSTTPDIGQGGCAAMEDAVVL----GAVFRQTR---------DI 318

Query: 118 AQAIDGYVKERKWRVTGLVIGSYLSGWVQDGG----SNWWMRFLRDVIFYRFLVG 168
           A A+  Y  +R  RV  LV+ +     +  G     +  W + LR+    R + G
Sbjct: 319 AAALREYEAQRCDRVRDLVLKARKRCDITHGKDMQLTEAWYQELREETGERIING 373
Catalyzes the hydroxylation of uric acid to 5-hydroxyisourate.
Klebsiella pneumoniae subsp. pneumoniae (strain ATCC 700721 / MGH 78578) (taxid: 272620)
EC: 1EC: .EC: 1EC: 4EC: .EC: 1EC: 3EC: .EC: 1EC: 1EC: 3
>sp|B6D1N4|HPXO_KLEPN FAD-dependent urate hydroxylase OS=Klebsiella pneumoniae GN=hpxO PE=3 SV=1 Back     alignment and function description
>sp|B5B0J6|HPXO_KLEOX FAD-dependent urate hydroxylase OS=Klebsiella oxytoca GN=hpxO PE=3 SV=1 Back     alignment and function description
>sp|Q9FGC7|ZEP_ARATH Zeaxanthin epoxidase, chloroplastic OS=Arabidopsis thaliana GN=ZEP PE=1 SV=1 Back     alignment and function description
>sp|Q40412|ABA2_NICPL Zeaxanthin epoxidase, chloroplastic OS=Nicotiana plumbaginifolia GN=ABA2 PE=1 SV=1 Back     alignment and function description
>sp|Q0JCU7|ZEP_ORYSJ Zeaxanthin epoxidase, chloroplastic OS=Oryza sativa subsp. japonica GN=ZEP PE=2 SV=1 Back     alignment and function description
>sp|O81360|ABA2_PRUAR Zeaxanthin epoxidase, chloroplastic OS=Prunus armeniaca PE=2 SV=1 Back     alignment and function description
>sp|Q96375|ABA2_CAPAN Zeaxanthin epoxidase, chloroplastic OS=Capsicum annuum PE=2 SV=1 Back     alignment and function description
>sp|Q88FY2|6HN3M_PSEPK 6-hydroxynicotinate 3-monooxygenase OS=Pseudomonas putida (strain KT2440) GN=nicC PE=1 SV=1 Back     alignment and function description
>sp|Q3S4B7|3HBH_POLNA 3-hydroxybenzoate 6-hydroxylase OS=Polaromonas naphthalenivorans (strain CJ2) GN=nagX PE=1 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query198
255578424 462 monoxygenase, putative [Ricinus communis 0.939 0.402 0.637 1e-64
255578418 412 monoxygenase, putative [Ricinus communis 0.959 0.461 0.622 3e-64
224126917 417 predicted protein [Populus trichocarpa] 0.959 0.455 0.610 1e-61
224056051 404 predicted protein [Populus trichocarpa] 0.919 0.450 0.614 1e-59
224105743 414 predicted protein [Populus trichocarpa] 0.959 0.458 0.605 2e-59
359477074 413 PREDICTED: 3-hydroxybenzoate 6-hydroxyla 0.929 0.445 0.583 9e-58
359477076 408 PREDICTED: 3-hydroxybenzoate 6-hydroxyla 0.878 0.426 0.594 1e-55
225431405 411 PREDICTED: 3-hydroxybenzoate 6-hydroxyla 0.878 0.423 0.577 6e-54
255578420 408 monoxygenase, putative [Ricinus communis 0.949 0.460 0.546 1e-53
224105749 394 predicted protein [Populus trichocarpa] 0.959 0.482 0.548 5e-52
>gi|255578424|ref|XP_002530077.1| monoxygenase, putative [Ricinus communis] gi|223530430|gb|EEF32317.1| monoxygenase, putative [Ricinus communis] Back     alignment and taxonomy information
 Score =  251 bits (640), Expect = 1e-64,   Method: Compositional matrix adjust.
 Identities = 123/193 (63%), Positives = 141/193 (73%), Gaps = 7/193 (3%)

Query: 6   ENKAGNPELIQKEVLEKYAKVLPPFYSVIVRRSDASTLHWAPLMFRHPWNVFFGNLSKGN 65
           +N   +PELIQKEV+EKYA+  P  +  +VR +D STL WAPLM RHPWNV FGNLSKGN
Sbjct: 277 KNMQRDPELIQKEVVEKYAENFPSLFLEVVRHADLSTLTWAPLMLRHPWNVIFGNLSKGN 336

Query: 66  VTVAGDAMHPMTPDLGQGGCQALEDAVVLGRHIGNLLIKTKGHIATTGDNNVAQAIDGYV 125
           VTVAGDAMHPMTPDLGQGGC ALEDAVVLGRHIGN  IK    +    + ++A A++GYV
Sbjct: 337 VTVAGDAMHPMTPDLGQGGCSALEDAVVLGRHIGNSFIKNGRFV----EEDMALALEGYV 392

Query: 126 KERKWRVTGLVIGSYLSGWVQDGGSNWWMRFLRDVIFYRFLVGGVLGNKVTGYDCGKLPD 185
           KER+WR  GL+ GSYLSGW+Q  GSNWWM+FLRD IFY FL   VL   V  YDCG LP 
Sbjct: 393 KERRWRAAGLITGSYLSGWIQQSGSNWWMKFLRDAIFYGFLFRKVLNAVV--YDCGTLPS 450

Query: 186 VSLGEMDNPCKID 198
              GE  +  K D
Sbjct: 451 AP-GEQHSSNKTD 462

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|255578418|ref|XP_002530074.1| monoxygenase, putative [Ricinus communis] gi|223530427|gb|EEF32314.1| monoxygenase, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|224126917|ref|XP_002329505.1| predicted protein [Populus trichocarpa] gi|222870185|gb|EEF07316.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|224056051|ref|XP_002298720.1| predicted protein [Populus trichocarpa] gi|222845978|gb|EEE83525.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|224105743|ref|XP_002333773.1| predicted protein [Populus trichocarpa] gi|222838457|gb|EEE76822.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|359477074|ref|XP_002272352.2| PREDICTED: 3-hydroxybenzoate 6-hydroxylase 1-like [Vitis vinifera] gi|296088638|emb|CBI37629.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|359477076|ref|XP_002272571.2| PREDICTED: 3-hydroxybenzoate 6-hydroxylase-like [Vitis vinifera] Back     alignment and taxonomy information
>gi|225431405|ref|XP_002272608.1| PREDICTED: 3-hydroxybenzoate 6-hydroxylase 1 [Vitis vinifera] gi|296088643|emb|CBI37634.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|255578420|ref|XP_002530075.1| monoxygenase, putative [Ricinus communis] gi|223530428|gb|EEF32315.1| monoxygenase, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|224105749|ref|XP_002333774.1| predicted protein [Populus trichocarpa] gi|222838458|gb|EEE76823.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query198
TAIR|locus:2153499406 AT5G05320 "AT5G05320" [Arabido 0.848 0.413 0.404 3.5e-27
TAIR|locus:2121254407 AT4G38540 "AT4G38540" [Arabido 0.848 0.412 0.374 9.4e-27
TAIR|locus:2130694422 MO1 "monooxygenase 1" [Arabido 0.909 0.426 0.336 8e-18
TAIR|locus:2058723439 CTF2A "AT2G35660" [Arabidopsis 0.818 0.369 0.299 4.5e-12
TAIR|locus:2060584427 CTF2B "AT2G29720" [Arabidopsis 0.676 0.313 0.308 8.5e-11
UNIPROTKB|G4NBV2443 MGG_10792 "Uncharacterized pro 0.489 0.218 0.336 1.5e-08
UNIPROTKB|A6T923384 hpxO "FAD-dependent urate hydr 0.191 0.098 0.631 2.3e-06
UNIPROTKB|B5B0J6384 hpxO "FAD-dependent urate hydr 0.191 0.098 0.657 2.3e-06
UNIPROTKB|B6D1N4384 hpxO "FAD-dependent urate hydr 0.191 0.098 0.631 2.3e-06
TAIR|locus:2158083 667 ABA1 "ABA DEFICIENT 1" [Arabid 0.338 0.100 0.371 4.2e-05
TAIR|locus:2153499 AT5G05320 "AT5G05320" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 305 (112.4 bits), Expect = 3.5e-27, P = 3.5e-27
 Identities = 72/178 (40%), Positives = 98/178 (55%)

Query:    11 NPELIQKEVLEKYAKVLPPFYSVIVRRSDASTLHWAPLMFRHPWNVFFGNLSKGNVTVAG 70
             N + I++ VL K  K LP     I+  +D  +L   PLM+R PW + + N++K NV VAG
Sbjct:   231 NHQKIKQFVLTKI-KDLPDNIKSILETTDLDSLVMNPLMYRPPWELLWANIAKDNVCVAG 289

Query:    71 DAMHPMTPDLGQGGCQALEDAVVLGRHIGNLLIKTKGHIATTGDNNVA--QAIDG---YV 125
             DA+HPMTPD+GQGGC A+ED V+L R +G  + K K     T D N +  +  DG   Y 
Sbjct:   290 DALHPMTPDIGQGGCSAMEDGVILARCLGEAM-KAKNMKGETEDENESYRRIEDGLKKYA 348

Query:   126 KERKWRVTGLVIGSYLSGWVQDGGSNWWMRFLRDVIFYRFLVGGVLGNKVTGYDCGKL 183
               RKWR   L+  SY  G++Q     W M   RD     FL    L  K + ++CG+L
Sbjct:   349 GSRKWRSIDLITTSYTVGFIQQSRGKW-MTLFRDKFMSSFL--SWLRVKKSHFNCGRL 403
GO:0004497 "monooxygenase activity" evidence=ISS
GO:0005575 "cellular_component" evidence=ND
GO:0008152 "metabolic process" evidence=IEA
GO:0016491 "oxidoreductase activity" evidence=IEA
GO:0009617 "response to bacterium" evidence=RCA
GO:0045087 "innate immune response" evidence=RCA
TAIR|locus:2121254 AT4G38540 "AT4G38540" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2130694 MO1 "monooxygenase 1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2058723 CTF2A "AT2G35660" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2060584 CTF2B "AT2G29720" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
UNIPROTKB|G4NBV2 MGG_10792 "Uncharacterized protein" [Magnaporthe oryzae 70-15 (taxid:242507)] Back     alignment and assigned GO terms
UNIPROTKB|A6T923 hpxO "FAD-dependent urate hydroxylase" [Klebsiella pneumoniae subsp. pneumoniae MGH 78578 (taxid:272620)] Back     alignment and assigned GO terms
UNIPROTKB|B5B0J6 hpxO "FAD-dependent urate hydroxylase" [Klebsiella oxytoca (taxid:571)] Back     alignment and assigned GO terms
UNIPROTKB|B6D1N4 hpxO "FAD-dependent urate hydroxylase" [Klebsiella pneumoniae (taxid:573)] Back     alignment and assigned GO terms
TAIR|locus:2158083 ABA1 "ABA DEFICIENT 1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query198
COG0654387 COG0654, UbiH, 2-polyprenyl-6-methoxyphenol hydrox 7e-10
PRK08163396 PRK08163, PRK08163, salicylate hydroxylase; Provis 3e-09
PRK06753373 PRK06753, PRK06753, hypothetical protein; Provisio 3e-09
PRK06847375 PRK06847, PRK06847, hypothetical protein; Provisio 3e-09
PLN02927 668 PLN02927, PLN02927, antheraxanthin epoxidase/zeaxa 7e-08
PRK07538413 PRK07538, PRK07538, hypothetical protein; Provisio 3e-05
TIGR03219414 TIGR03219, salicylate_mono, salicylate 1-monooxyge 5e-04
PRK07045388 PRK07045, PRK07045, putative monooxygenase; Review 0.003
>gnl|CDD|223727 COG0654, UbiH, 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases [Coenzyme metabolism / Energy production and conversion] Back     alignment and domain information 
 Score = 57.0 bits (138), Expect = 7e-10
 Identities = 39/165 (23%), Positives = 55/165 (33%), Gaps = 25/165 (15%)

Query: 2   YVSGENKAGNPELIQKEVLEKYAKVLPPFYSVIVRRSDASTLHWAPLMFRH--PWNVFFG 59
            +          L  +E L +  + L     +  R +  S+    PL  R    +     
Sbjct: 222 SLPPGPAEDLQGLSDEEFLRELQRRLGERDPLG-RVTLVSSRSAFPLSLRVAERY----- 275

Query: 60  NLSKGNVTVAGDAMHPMTPDLGQGGCQALEDAVVLGRHIGNLLIKTKGHIATTGDNNVAQ 119
              +G V + GDA H M P  GQG   ALEDA  L               A       A 
Sbjct: 276 --RRGRVVLIGDAAHAMHPLAGQGANLALEDAAALAE----------ALAAAPRPGADAA 323

Query: 120 AIDGYVKERKWRVTGLVIGSYLSGWVQDGGSNWW--MRFLRDVIF 162
           A+  Y   R+ R   +     LS  +    S      RFLR++  
Sbjct: 324 ALAAYEARRRPRAEAIQK---LSRALGRLFSADGPFARFLRNLGL 365

Length = 387
>gnl|CDD|181262 PRK08163, PRK08163, salicylate hydroxylase; Provisional Back     alignment and domain information
>gnl|CDD|168661 PRK06753, PRK06753, hypothetical protein; Provisional Back     alignment and domain information
>gnl|CDD|235874 PRK06847, PRK06847, hypothetical protein; Provisional Back     alignment and domain information
>gnl|CDD|178515 PLN02927, PLN02927, antheraxanthin epoxidase/zeaxanthin epoxidase Back     alignment and domain information
>gnl|CDD|236046 PRK07538, PRK07538, hypothetical protein; Provisional Back     alignment and domain information
>gnl|CDD|132263 TIGR03219, salicylate_mono, salicylate 1-monooxygenase Back     alignment and domain information
>gnl|CDD|136171 PRK07045, PRK07045, putative monooxygenase; Reviewed Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 198
TIGR03219414 salicylate_mono salicylate 1-monooxygenase. Member 99.92
PRK06475400 salicylate hydroxylase; Provisional 99.91
PRK06753373 hypothetical protein; Provisional 99.9
PRK07588391 hypothetical protein; Provisional 99.9
PRK08163396 salicylate hydroxylase; Provisional 99.9
PRK06847375 hypothetical protein; Provisional 99.9
PRK05714405 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hy 99.89
PRK07236386 hypothetical protein; Provisional 99.88
PLN02927 668 antheraxanthin epoxidase/zeaxanthin epoxidase 99.88
PRK08849384 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hy 99.87
KOG2614420 consensus Kynurenine 3-monooxygenase and related f 99.87
PRK05868372 hypothetical protein; Validated 99.87
PRK06996398 hypothetical protein; Provisional 99.87
PRK06617374 2-octaprenyl-6-methoxyphenyl hydroxylase; Validate 99.87
PRK08773392 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hy 99.86
PRK08850405 2-octaprenyl-6-methoxyphenol hydroxylase; Validate 99.85
PRK08013400 oxidoreductase; Provisional 99.85
PRK07364415 2-octaprenyl-6-methoxyphenyl hydroxylase; Validate 99.85
PRK08020391 ubiF 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquin 99.85
PRK07538413 hypothetical protein; Provisional 99.85
PRK07333403 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisio 99.85
PRK07494388 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisio 99.84
PRK06183 538 mhpA 3-(3-hydroxyphenyl)propionate hydroxylase; Va 99.83
TIGR02360390 pbenz_hydroxyl 4-hydroxybenzoate 3-monooxygenase. 99.83
PRK09126392 hypothetical protein; Provisional 99.83
TIGR01988385 Ubi-OHases Ubiquinone biosynthesis hydroxylase, Ub 99.83
TIGR01989437 COQ6 Ubiquinone biosynthesis mono0xygenase COQ6. T 99.83
PRK06185407 hypothetical protein; Provisional 99.83
PRK08243392 4-hydroxybenzoate 3-monooxygenase; Validated 99.82
PRK08132 547 FAD-dependent oxidoreductase; Provisional 99.82
TIGR01984382 UbiH 2-polyprenyl-6-methoxyphenol 4-hydroxylase. T 99.82
PRK07608388 ubiquinone biosynthesis hydroxylase family protein 99.82
PRK07045388 putative monooxygenase; Reviewed 99.82
COG0654387 UbiH 2-polyprenyl-6-methoxyphenol hydroxylase and 99.82
PRK05732395 2-octaprenyl-6-methoxyphenyl hydroxylase; Validate 99.81
PRK06834 488 hypothetical protein; Provisional 99.79
PRK08255 765 salicylyl-CoA 5-hydroxylase; Reviewed 99.78
PLN02985514 squalene monooxygenase 99.77
PTZ00367567 squalene epoxidase; Provisional 99.74
PF01494356 FAD_binding_3: FAD binding domain; InterPro: IPR00 99.74
PRK08244493 hypothetical protein; Provisional 99.73
PRK06126 545 hypothetical protein; Provisional 99.73
PRK06184502 hypothetical protein; Provisional 99.71
PRK08294 634 phenol 2-monooxygenase; Provisional 99.7
PRK07190487 hypothetical protein; Provisional 99.69
PF08491276 SE: Squalene epoxidase; InterPro: IPR013698 This d 99.38
KOG3855481 consensus Monooxygenase involved in coenzyme Q (ub 99.15
TIGR02032295 GG-red-SF geranylgeranyl reductase family. This mo 99.14
TIGR02023388 BchP-ChlP geranylgeranyl reductase. This model rep 99.08
PRK11445351 putative oxidoreductase; Provisional 99.08
TIGR01790388 carotene-cycl lycopene cyclase family protein. Thi 98.94
PLN00093450 geranylgeranyl diphosphate reductase; Provisional 98.94
TIGR02028398 ChlP geranylgeranyl reductase. This model represen 98.9
TIGR01789370 lycopene_cycl lycopene cyclase. This model represe 98.57
KOG1298509 consensus Squalene monooxygenase [Lipid transport 97.98
PRK10015429 oxidoreductase; Provisional 97.94
PRK10157428 putative oxidoreductase FixC; Provisional 97.86
COG0644396 FixC Dehydrogenases (flavoproteins) [Energy produc 97.76
PF04820454 Trp_halogenase: Tryptophan halogenase; InterPro: I 97.26
PLN02697529 lycopene epsilon cyclase 96.77
PLN02463447 lycopene beta cyclase 95.12
PF05834374 Lycopene_cycl: Lycopene cyclase protein; InterPro: 92.06
>TIGR03219 salicylate_mono salicylate 1-monooxygenase Back     alignment and domain information 
Probab=99.92  E-value=4.6e-25  Score=192.26  Aligned_cols=127  Identities=24%  Similarity=0.274  Sum_probs=106.6

Q ss_pred             hHHHHHHHHHHHhccCCHHHHHHHHhCCCCCcccccccccCCccccccCccCCCEEEecCCCCcCCCCchhhHhhHHHHH
Q 036400           12 PELIQKEVLEKYAKVLPPFYSVIVRRSDASTLHWAPLMFRHPWNVFFGNLSKGNVTVAGDAMHPMTPDLGQGGCQALEDA   91 (198)
Q Consensus        12 ~~~~k~~l~~~~~~~~~~~~~~li~~~~~~~~~~~~l~~~~~~~~~~~~w~~grVvLiGDAAH~m~P~~GqGan~AieDa   91 (198)
                      .+..++++.+.|. +|++.++++++.++  ....|++++..+.    ++|++|||+|||||||+|+|+.|||+|+|||||
T Consensus       255 ~~~~~~~l~~~~~-~~~~~v~~~~~~~~--~~~~~~~~~~~~~----~~w~~grv~LiGDAAH~m~P~~GqGa~~AieDA  327 (414)
T TIGR03219       255 REATQREMLDAFA-GWGDAARALLECIP--APTLWALHDLAEL----PGYVHGRVALIGDAAHAMLPHQGAGAGQGLEDA  327 (414)
T ss_pred             CccCHHHHHHHhc-CCCHHHHHHHHhCC--CCCceeeeecccc----cceeeCcEEEEEcccCCCCCCcCcchHhHHHHH
Confidence            3345778888998 99999999999886  3345667666554    489999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhhcCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCChHHH
Q 036400           92 VVLGRHIGNLLIKTKGHIATTGDNNVAQAIDGYVKERKWRVTGLVIGSYLSGWVQDGGSNWWMR  155 (198)
Q Consensus        92 ~~La~~L~~~~~~~~~~~~~~~~~~~~~al~~Ye~~R~~r~~~~~~~s~~~~~~~~~~~~~~~~  155 (198)
                      .+|+++|.....+       ..  +++.+|+.||+.|++|+..+++.|+.++++++.. ++...
T Consensus       328 ~~La~~L~~~~~~-------~~--~~~~al~~Ye~~R~~r~~~~~~~s~~~~~~~~~~-~~~~~  381 (414)
T TIGR03219       328 YFLARLLGDTELE-------AG--DLPALLEAYDDVRRPRACRVQRTSREAGELYELR-DPAVG  381 (414)
T ss_pred             HHHHHHHHhhccC-------cc--hHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhcCC-Chhcc
Confidence            9999999864321       23  7899999999999999999999999999999887 64433

Members of this protein family are salicylate 1-monooxygenase, also called salicylate hydroxylase. This enzyme converts salicylate to catechol, which is a common intermediate in the degradation of a number of aromatic compounds (phenol, toluene, benzoate, etc.). The gene for this protein may occur in catechol degradation genes, such as those of the meta-cleavage pathway.
>PRK06475 salicylate hydroxylase; Provisional Back     alignment and domain information
>PRK06753 hypothetical protein; Provisional Back     alignment and domain information
>PRK07588 hypothetical protein; Provisional Back     alignment and domain information
>PRK08163 salicylate hydroxylase; Provisional Back     alignment and domain information
>PRK06847 hypothetical protein; Provisional Back     alignment and domain information
>PRK05714 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional Back     alignment and domain information
>PRK07236 hypothetical protein; Provisional Back     alignment and domain information
>PLN02927 antheraxanthin epoxidase/zeaxanthin epoxidase Back     alignment and domain information
>PRK08849 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional Back     alignment and domain information
>KOG2614 consensus Kynurenine 3-monooxygenase and related flavoprotein monooxygenases [Energy production and conversion; General function prediction only] Back     alignment and domain information
>PRK05868 hypothetical protein; Validated Back     alignment and domain information
>PRK06996 hypothetical protein; Provisional Back     alignment and domain information
>PRK06617 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated Back     alignment and domain information
>PRK08773 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Validated Back     alignment and domain information
>PRK08850 2-octaprenyl-6-methoxyphenol hydroxylase; Validated Back     alignment and domain information
>PRK08013 oxidoreductase; Provisional Back     alignment and domain information
>PRK07364 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated Back     alignment and domain information
>PRK08020 ubiF 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Reviewed Back     alignment and domain information
>PRK07538 hypothetical protein; Provisional Back     alignment and domain information
>PRK07333 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional Back     alignment and domain information
>PRK07494 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional Back     alignment and domain information
>PRK06183 mhpA 3-(3-hydroxyphenyl)propionate hydroxylase; Validated Back     alignment and domain information
>TIGR02360 pbenz_hydroxyl 4-hydroxybenzoate 3-monooxygenase Back     alignment and domain information
>PRK09126 hypothetical protein; Provisional Back     alignment and domain information
>TIGR01988 Ubi-OHases Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family Back     alignment and domain information
>TIGR01989 COQ6 Ubiquinone biosynthesis mono0xygenase COQ6 Back     alignment and domain information
>PRK06185 hypothetical protein; Provisional Back     alignment and domain information
>PRK08243 4-hydroxybenzoate 3-monooxygenase; Validated Back     alignment and domain information
>PRK08132 FAD-dependent oxidoreductase; Provisional Back     alignment and domain information
>TIGR01984 UbiH 2-polyprenyl-6-methoxyphenol 4-hydroxylase Back     alignment and domain information
>PRK07608 ubiquinone biosynthesis hydroxylase family protein; Provisional Back     alignment and domain information
>PRK07045 putative monooxygenase; Reviewed Back     alignment and domain information
>COG0654 UbiH 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases [Coenzyme metabolism / Energy production and conversion] Back     alignment and domain information
>PRK05732 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated Back     alignment and domain information
>PRK06834 hypothetical protein; Provisional Back     alignment and domain information
>PRK08255 salicylyl-CoA 5-hydroxylase; Reviewed Back     alignment and domain information
>PLN02985 squalene monooxygenase Back     alignment and domain information
>PTZ00367 squalene epoxidase; Provisional Back     alignment and domain information
>PF01494 FAD_binding_3: FAD binding domain; InterPro: IPR002938 Monooxygenases incorporate one hydroxyl group into substrates and are found in many metabolic pathways Back     alignment and domain information
>PRK08244 hypothetical protein; Provisional Back     alignment and domain information
>PRK06126 hypothetical protein; Provisional Back     alignment and domain information
>PRK06184 hypothetical protein; Provisional Back     alignment and domain information
>PRK08294 phenol 2-monooxygenase; Provisional Back     alignment and domain information
>PRK07190 hypothetical protein; Provisional Back     alignment and domain information
>PF08491 SE: Squalene epoxidase; InterPro: IPR013698 This domain is found in squalene epoxidase (SE) and related proteins which are found in taxonomically diverse groups of eukaryotes and also in bacteria Back     alignment and domain information
>KOG3855 consensus Monooxygenase involved in coenzyme Q (ubiquinone) biosynthesis [Coenzyme transport and metabolism; Energy production and conversion] Back     alignment and domain information
>TIGR02032 GG-red-SF geranylgeranyl reductase family Back     alignment and domain information
>TIGR02023 BchP-ChlP geranylgeranyl reductase Back     alignment and domain information
>PRK11445 putative oxidoreductase; Provisional Back     alignment and domain information
>TIGR01790 carotene-cycl lycopene cyclase family protein Back     alignment and domain information
>PLN00093 geranylgeranyl diphosphate reductase; Provisional Back     alignment and domain information
>TIGR02028 ChlP geranylgeranyl reductase Back     alignment and domain information
>TIGR01789 lycopene_cycl lycopene cyclase Back     alignment and domain information
>KOG1298 consensus Squalene monooxygenase [Lipid transport and metabolism] Back     alignment and domain information
>PRK10015 oxidoreductase; Provisional Back     alignment and domain information
>PRK10157 putative oxidoreductase FixC; Provisional Back     alignment and domain information
>COG0644 FixC Dehydrogenases (flavoproteins) [Energy production and conversion] Back     alignment and domain information
>PF04820 Trp_halogenase: Tryptophan halogenase; InterPro: IPR006905 Tryptophan halogenase catalyses the chlorination of tryptophan to form 7-chlorotryptophan Back     alignment and domain information
>PLN02697 lycopene epsilon cyclase Back     alignment and domain information
>PLN02463 lycopene beta cyclase Back     alignment and domain information
>PF05834 Lycopene_cycl: Lycopene cyclase protein; InterPro: IPR008671 This family consists of lycopene beta and epsilon cyclase proteins Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query198
3rp8_A407 Crystal Structure Of Klebsiella Pneumoniae R204q Hp 1e-08
3rp6_A407 Crystal Structure Of Klebsiella Pneumoniae Hpxo Com 3e-08
4hb9_A412 Crystal Structure Of A Putative Fad Containing Mono 7e-04
>pdb|3RP8|A Chain A, Crystal Structure Of Klebsiella Pneumoniae R204q Hpxo Complexed With Fad Length = 407 Back     alignment and structure 
Iteration: 1

 Score = 55.8 bits (133), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 39/115 (33%), Positives = 57/115 (49%), Gaps = 17/115 (14%)
Query: 58  FGNLSKGNVTVAGDAMHPMTPDLGQGGCQALEDAVVLGRHIGNLLIKTKGHIATTGDNNV 117
           F  L +G V + GDA H  TPD+GQGGC A+EDAVVL    G +  +T+         ++
Sbjct: 295 FSRLVRGRVALLGDAGHSTTPDIGQGGCAAMEDAVVL----GAVFRQTR---------DI 341
Query: 118 AQAIDGYVKERKWRVTGLVIGSYLSGWVQDGG----SNWWMRFLRDVIFYRFLVG 168
           A A+  Y  +R  RV  LV+ +     +  G     +  W + LR+    R + G
Sbjct: 342 AAALREYEAQRCDRVRDLVLKARKRCDITHGKDMQLTEAWYQELREETGERIING 396
>pdb|3RP6|A Chain A, Crystal Structure Of Klebsiella Pneumoniae Hpxo Complexed With Fad Length = 407 Back     alignment and structure
>pdb|4HB9|A Chain A, Crystal Structure Of A Putative Fad Containing Monooxygenase From Photorhabdus Luminescens Subsp. Laumondii Tto1 (Target Psi-012791) Length = 412 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query198
3rp8_A407 Flavoprotein monooxygenase; FAD-binding protein, o 5e-23
3alj_A379 2-methyl-3-hydroxypyridine-5-carboxylic acid OXYG; 7e-22
3c96_A410 Flavin-containing monooxygenase; FAD, oxidoreducta 2e-20
2vou_A397 2,6-dihydroxypyridine hydroxylase; oxidoreductase, 2e-18
2xdo_A398 TETX2 protein; tetracycline degradation, tigecycli 1e-16
3c4a_A381 Probable tryptophan hydroxylase VIOD; alpha-beta p 1e-10
3ihm_A430 Styrene monooxygenase A; rossman fold, anti-parall 2e-06
1k0i_A394 P-hydroxybenzoate hydroxylase; PHBH, FAD, P-OHB, h 3e-04
>3rp8_A Flavoprotein monooxygenase; FAD-binding protein, oxidoreductase; HET: FAD; 1.97A {Klebsiella pneumoniae} PDB: 3rp7_A* 3rp6_A* Length = 407 Back     alignment and structure
 Score = 93.9 bits (234), Expect = 5e-23
 Identities = 41/179 (22%), Positives = 68/179 (37%), Gaps = 31/179 (17%)

Query: 6   ENKAGNPELIQKEVLEKYAKVLPPFYSVIVRRSDASTLHWAPLMFRHPWNVFFGNLSKGN 65
              A + + ++ ++   +A   PP   +I      +T     +    P++       +G 
Sbjct: 248 AGLAEDRDTLRADLSRYFAGWAPPVQKLIAALDPQTTNRI-EIHDIEPFSRL----VRGR 302

Query: 66  VTVAGDAMHPMTPDLGQGGCQALEDAVVLGRHIGNLLIKTKGHIATTGDNNVAQAIDGYV 125
           V + GDA H  TPD+GQGGC A+EDAVVLG                    ++A A+  Y 
Sbjct: 303 VALLGDAGHSTTPDIGQGGCAAMEDAVVLGAVFRQ-------------TRDIAAALREYE 349

Query: 126 KERKWRVTGLVIGSYLSGWVQDGGSNWWMRFLRDVIF------------YRFLVGGVLG 172
            +R  RV  LV+ +     +   G +  +                       ++ G LG
Sbjct: 350 AQRCDRVRDLVLKARKRCDITH-GKDMQLTEAWYQELREETGERIINGMCDTILSGPLG 407
>3alj_A 2-methyl-3-hydroxypyridine-5-carboxylic acid OXYG; alpha/beta fold, oxidoreductase; HET: FAD; 1.48A {Mesorhizobium loti} PDB: 3alh_A* 3ali_A* 3gmb_A* 3gmc_A* 3alk_A* 3alm_A* 3all_A* Length = 379 Back     alignment and structure
>3c96_A Flavin-containing monooxygenase; FAD, oxidoreductase, PF01266, NESG, PAR240, structural genomics, PSI-2; HET: FAD; 1.90A {Pseudomonas aeruginosa PAO1} SCOP: c.3.1.2 d.16.1.2 PDB: 2rgj_A* Length = 410 Back     alignment and structure
>2vou_A 2,6-dihydroxypyridine hydroxylase; oxidoreductase, aromatic hydroxylase, nicotine degradation, mono-oxygenase; HET: FAD; 2.6A {Arthrobacter nicotinovorans} SCOP: c.3.1.2 d.16.1.2 Length = 397 Back     alignment and structure
>2xdo_A TETX2 protein; tetracycline degradation, tigecycline, flavin, bacteroides F oxidoreductase; HET: FAD; 2.09A {Bacteroides thetaiotaomicron} PDB: 2y6q_A* 2xyo_A* 2y6r_A* 3p9u_A* Length = 398 Back     alignment and structure
>3c4a_A Probable tryptophan hydroxylase VIOD; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: FAD; 2.30A {Chromobacterium violaceum atcc 12472} Length = 381 Back     alignment and structure
>3ihm_A Styrene monooxygenase A; rossman fold, anti-parallel beta strands, dimer, cavity, oxidoreductase; 2.30A {Pseudomonas putida} Length = 430 Back     alignment and structure
>1k0i_A P-hydroxybenzoate hydroxylase; PHBH, FAD, P-OHB, hydrolase; HET: FAD PHB; 1.80A {Pseudomonas aeruginosa} SCOP: c.3.1.2 d.16.1.2 PDB: 1k0j_A* 1k0l_A* 1doc_A* 1d7l_A* 1dod_A* 1doe_A* 1ius_A* 1iut_A* 1iuu_A* 1iuv_A* 1iuw_A* 1iux_A* 1pxb_A* 1pxc_A* 1dob_A* 1ykj_A* 1pxa_A* 1pbe_A* 1pdh_A* 1phh_A* ... Length = 394 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query198
4hb9_A412 Similarities with probable monooxygenase; flavin, 99.92
3rp8_A407 Flavoprotein monooxygenase; FAD-binding protein, o 99.88
2vou_A397 2,6-dihydroxypyridine hydroxylase; oxidoreductase, 99.85
2x3n_A399 Probable FAD-dependent monooxygenase; oxidoreducta 99.83
2xdo_A398 TETX2 protein; tetracycline degradation, tigecycli 99.82
3c4a_A381 Probable tryptophan hydroxylase VIOD; alpha-beta p 99.81
1k0i_A394 P-hydroxybenzoate hydroxylase; PHBH, FAD, P-OHB, h 99.78
3c96_A410 Flavin-containing monooxygenase; FAD, oxidoreducta 99.78
2qa2_A499 CABE, polyketide oxygenase CABE; FAD, angucycline, 99.74
3fmw_A 570 Oxygenase; mithramycin, baeyer-villiger, flavin bi 99.72
2qa1_A 500 PGAE, polyketide oxygenase PGAE; FAD, angucycline, 99.72
3alj_A379 2-methyl-3-hydroxypyridine-5-carboxylic acid OXYG; 99.71
1pn0_A 665 Phenol 2-monooxygenase; two dimers, TLS refinement 99.69
2r0c_A 549 REBC; flavin adenine dinucleotide, monooxygenase, 99.69
3ihm_A430 Styrene monooxygenase A; rossman fold, anti-parall 99.69
3ihg_A 535 RDME; flavoenzyme, anthracycline, polyketide biosy 99.67
2dkh_A 639 3-hydroxybenzoate hydroxylase; flavoprotein, monoo 99.66
3e1t_A512 Halogenase; flavoprotein; HET: FAD; 2.05A {Chondro 99.53
3atr_A453 Conserved archaeal protein; saturating double bond 99.5
3oz2_A397 Digeranylgeranylglycerophospholipid reductase; str 99.47
3cgv_A397 Geranylgeranyl reductase related protein; NP_39399 99.41
2pyx_A526 Tryptophan halogenase; structural genomics, JOI fo 99.38
2gmh_A 584 Electron transfer flavoprotein-ubiquinone oxidored 99.37
3i3l_A 591 Alkylhalidase CMLS; flavin-dependent halogenase, c 99.36
2aqj_A538 Tryptophan halogenase, pRNA; flavin-dependent halo 99.3
2weu_A511 Tryptophan 5-halogenase; regioselectivity, antifun 99.27
2e4g_A550 Tryptophan halogenase; flavin-binding, rebeccamyci 99.24
3nix_A421 Flavoprotein/dehydrogenase; structural genomics, P 99.16
2bry_A497 NEDD9 interacting protein with calponin homology a 98.69
3kkj_A336 Amine oxidase, flavin-containing; oxidoreductase, 97.02
1yvv_A336 Amine oxidase, flavin-containing; oxidoreductase, 95.59
>4hb9_A Similarities with probable monooxygenase; flavin, structural genomics, NEW YORK structural genomics RE consortium, nysgrc, PSI; HET: MSE FAD; 1.93A {Photorhabdus luminescens} Back     alignment and structure
Probab=99.92  E-value=8e-25  Score=186.45  Aligned_cols=139  Identities=22%  Similarity=0.185  Sum_probs=108.6

Q ss_pred             CCChHHHHHHHHHHHhccCCHHHHHHHHhCCCCCcccccccccCCccccccCccCCCEEEecCCCCcCCCCchhhHhhHH
Q 036400            9 AGNPELIQKEVLEKYAKVLPPFYSVIVRRSDASTLHWAPLMFRHPWNVFFGNLSKGNVTVAGDAMHPMTPDLGQGGCQAL   88 (198)
Q Consensus         9 ~~~~~~~k~~l~~~~~~~~~~~~~~li~~~~~~~~~~~~l~~~~~~~~~~~~w~~grVvLiGDAAH~m~P~~GqGan~Ai   88 (198)
                      ..+++..++.+.+.|. +|+|.++.+++.++...+..+.++..++.    .+|..|||+|||||||+|+|+.|||+|+||
T Consensus       261 ~~~~~~~~~~~~~~~~-~~~p~~~~li~~~~~~~~~~~~~~~~~~~----~~~~~grv~LiGDAAH~~~P~~GqG~n~ai  335 (412)
T 4hb9_A          261 DFSAEALCDLVQSRMI-SWDPSLHTLVQQSDMENISPLHLRSMPHL----LPWKSSTVTLLGDAIHNMTPMTGSGANTAL  335 (412)
T ss_dssp             GCCHHHHHHHHHHHTT-TSCHHHHHHHHTSCTTCCEEEEEEECCCC----CCCCCCSEEECTHHHHCSSCCSSSHHHHHH
T ss_pred             ccchHHHHHHHHHHhc-cCChHHHHHHHhcccceeccchhcccccc----ccccccCEEEEEcccccCCCchhhHHHHHH
Confidence            3467788899999999 99999999999988666666666665554    379999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHhhcCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHhhh--hhcCCCChHHHHHHHHHHH
Q 036400           89 EDAVVLGRHIGNLLIKTKGHIATTGDNNVAQAIDGYVKERKWRVTGLVIGSYLSGW--VQDGGSNWWMRFLRDVIFY  163 (198)
Q Consensus        89 eDa~~La~~L~~~~~~~~~~~~~~~~~~~~~al~~Ye~~R~~r~~~~~~~s~~~~~--~~~~~~~~~~~~~r~~~~~  163 (198)
                      +||++|+++|.....+       ..  ++..+|+.||++|++|++.+++.|++.+.  +.+.+ .+.. ..|+..++
T Consensus       336 ~DA~~La~~L~~~~~~-------~~--~~~~aL~~Ye~~R~~~~~~~~~~s~~~~~~~~~~~~-~~~~-~~r~~~~~  401 (412)
T 4hb9_A          336 RDALLLTQKLASVASG-------HE--ELVKAISDYEQQMRAYANEIVGISLRSAQNAVIHFS-IPPL-KQRHLSIR  401 (412)
T ss_dssp             HHHHHHHHHHHHHHTT-------SS--CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-C------------
T ss_pred             HHHHHHHHHHHHHhcC-------Cc--CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCC-CchH-HHHHHHHh
Confidence            9999999999987654       23  68899999999999999999999987764  34444 4333 23554443
>3rp8_A Flavoprotein monooxygenase; FAD-binding protein, oxidoreductase; HET: FAD; 1.97A {Klebsiella pneumoniae} PDB: 3rp7_A* 3rp6_A* Back     alignment and structure
>2vou_A 2,6-dihydroxypyridine hydroxylase; oxidoreductase, aromatic hydroxylase, nicotine degradation, mono-oxygenase; HET: FAD; 2.6A {Arthrobacter nicotinovorans} SCOP: c.3.1.2 d.16.1.2 Back     alignment and structure
>2x3n_A Probable FAD-dependent monooxygenase; oxidoreductase; HET: FAD; 1.75A {Pseudomonas aeruginosa} Back     alignment and structure
>2xdo_A TETX2 protein; tetracycline degradation, tigecycline, flavin, bacteroides F oxidoreductase; HET: FAD; 2.09A {Bacteroides thetaiotaomicron} PDB: 2y6q_A* 2xyo_A* 2y6r_A* 3p9u_A* Back     alignment and structure
>3c4a_A Probable tryptophan hydroxylase VIOD; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: FAD; 2.30A {Chromobacterium violaceum atcc 12472} Back     alignment and structure
>1k0i_A P-hydroxybenzoate hydroxylase; PHBH, FAD, P-OHB, hydrolase; HET: FAD PHB; 1.80A {Pseudomonas aeruginosa} SCOP: c.3.1.2 d.16.1.2 PDB: 1k0j_A* 1k0l_A* 1doc_A* 1d7l_A* 1dod_A* 1doe_A* 1ius_A* 1iut_A* 1iuu_A* 1iuv_A* 1iuw_A* 1iux_A* 1pxb_A* 1pxc_A* 1dob_A* 1ykj_A* 1pxa_A* 1pbe_A* 1pdh_A* 1phh_A* ... Back     alignment and structure
>3c96_A Flavin-containing monooxygenase; FAD, oxidoreductase, PF01266, NESG, PAR240, structural genomics, PSI-2; HET: FAD; 1.90A {Pseudomonas aeruginosa PAO1} SCOP: c.3.1.2 d.16.1.2 PDB: 2rgj_A* Back     alignment and structure
>2qa2_A CABE, polyketide oxygenase CABE; FAD, angucycline, aromatic hydroxylase, oxidored; HET: FAD; 2.70A {Streptomyces} Back     alignment and structure
>3fmw_A Oxygenase; mithramycin, baeyer-villiger, flavin binding protein, oxidoreductase; HET: FAD; 2.89A {Streptomyces argillaceus} Back     alignment and structure
>2qa1_A PGAE, polyketide oxygenase PGAE; FAD, angucycline, aromatic hydroxylase, oxidored; HET: FAD; 1.80A {Streptomyces} Back     alignment and structure
>3alj_A 2-methyl-3-hydroxypyridine-5-carboxylic acid OXYG; alpha/beta fold, oxidoreductase; HET: FAD; 1.48A {Mesorhizobium loti} PDB: 3alh_A* 3ali_A* 3gmb_A* 3gmc_A* 3alk_A* 3alm_A* 3all_A* Back     alignment and structure
>1pn0_A Phenol 2-monooxygenase; two dimers, TLS refinement, oxidoreductase; HET: FAD; 1.70A {Trichosporon cutaneum} SCOP: c.3.1.2 c.47.1.10 d.16.1.2 PDB: 1foh_A* Back     alignment and structure
>2r0c_A REBC; flavin adenine dinucleotide, monooxygenase, oxidoreductase; HET: FAD; 1.80A {Lechevalieria aerocolonigenes} PDB: 2r0g_A* 2r0p_A* 3ept_A* Back     alignment and structure
>3ihm_A Styrene monooxygenase A; rossman fold, anti-parallel beta strands, dimer, cavity, oxidoreductase; 2.30A {Pseudomonas putida} Back     alignment and structure
>3ihg_A RDME; flavoenzyme, anthracycline, polyketide biosynthesis, merohedral twinning, enzyme mechanism, hydroxylase, flavoprotein; HET: FAD VAK; 2.49A {Streptomyces purpurascens} Back     alignment and structure
>2dkh_A 3-hydroxybenzoate hydroxylase; flavoprotein, monooxygenase, complex, oxidoreductase; HET: FAD 3HB; 1.80A {Comamonas testosteroni} PDB: 2dki_A* Back     alignment and structure
>3e1t_A Halogenase; flavoprotein; HET: FAD; 2.05A {Chondromyces crocatus} Back     alignment and structure
>3atr_A Conserved archaeal protein; saturating double bonds, archaeal membrane precursor, like 2 geranylgeranylglyceryl phosphate; HET: FDA; 1.80A {Sulfolobus acidocaldarius} PDB: 3atq_A* Back     alignment and structure
>3oz2_A Digeranylgeranylglycerophospholipid reductase; structural genomics, joint center for structural genomics; HET: MSE FAD OZ2; 1.60A {Thermoplasma acidophilum} Back     alignment and structure
>2pyx_A Tryptophan halogenase; structural genomics, JOI for structural genomics, JCSG, protein structure initiative biosynthetic protein; HET: MSE TLA PG4; 1.50A {Shewanella frigidimarina} Back     alignment and structure
>2gmh_A Electron transfer flavoprotein-ubiquinone oxidoreductase; HET: BHG FAD UQ5; 2.50A {Sus scrofa} SCOP: c.3.1.2 d.16.1.8 d.58.1.6 PDB: 2gmj_A* Back     alignment and structure
>3i3l_A Alkylhalidase CMLS; flavin-dependent halogenase, chloramphenicol biosynthesis, halogenation reaction, structural genomics; HET: FAD; 2.20A {Streptomyces venezuelae} Back     alignment and structure
>2aqj_A Tryptophan halogenase, pRNA; flavin-dependent halogenase, helical bundle, sandwiched sheets, structural genomics; HET: TRP FAD; 1.80A {Pseudomonas fluorescens} PDB: 2apg_A* 2ar8_A* 2ard_A* 2jkc_A* Back     alignment and structure
>2weu_A Tryptophan 5-halogenase; regioselectivity, antifungal protei; HET: TRP; 1.70A {Streptomyces rugosporus} PDB: 2wet_A* 2wes_A* Back     alignment and structure
>2e4g_A Tryptophan halogenase; flavin-binding, rebeccamycin biosynthesis, biosynthetic protein, flavoprotein; HET: TRP; 2.08A {Lechevalieria aerocolonigenes} PDB: 2o9z_A 2oa1_A* 2oal_A* 2oam_A Back     alignment and structure
>3nix_A Flavoprotein/dehydrogenase; structural genomics, PSI-2, NES protein structure initiative, northeast structural genomics consortium; HET: FAD; 2.60A {Cytophaga hutchinsonii} Back     alignment and structure
>2bry_A NEDD9 interacting protein with calponin homology and LIM domains; transport, coiled coil, cytoskeleton, FAD, flavoprotein, metal-binding, zinc; HET: FAD; 1.45A {Mus musculus} PDB: 2c4c_A* 2bra_A* Back     alignment and structure
>3kkj_A Amine oxidase, flavin-containing; oxidoreductase, PSR10, Q888A4, X-RAY, structure, PSI, protein structure initiative; HET: FAD; 2.50A {Pseudomonas syringae PV} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 198
d3c96a1288 c.3.1.2 (A:4-182,A:294-402) Monooxygenase PhzS {Ps 2e-07
d2voua1265 c.3.1.2 (A:2-163,A:292-394) Dihydroxypyridine hydr 2e-06
d1pn0a1360 c.3.1.2 (A:1-240,A:342-461) Phenol hydroxylase {So 0.001
>d3c96a1 c.3.1.2 (A:4-182,A:294-402) Monooxygenase PhzS {Pseudomonas aeruginosa [TaxId: 287]} Length = 288 Back     information, alignment and structure

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Monooxygenase PhzS
species: Pseudomonas aeruginosa [TaxId: 287]

 Score = 47.4 bits (111), Expect = 2e-07
 Identities = 20/122 (16%), Positives = 42/122 (34%), Gaps = 14/122 (11%)

Query: 41  STLHWAPLMFRHPWNVFFGNLSKGNVTVAGDAMHPMTPDLGQGGCQALEDAVVLGRHIGN 100
           S +       + P      +  +G +T+ GDA H M P    G  QA+ D + L   +  
Sbjct: 166 SAVRAHLHPDQRPLRDPLPHWGRGRITLLGDAAHLMYPMGANGASQAILDGIELAAAL-- 223

Query: 101 LLIKTKGHIATTGDNNVAQAIDGYVKERKWRVTGLVIGSYLSGWVQDGGSNWWMRFLRDV 160
                        + +VA A+  Y + R+     +++ +      +   +    +  +  
Sbjct: 224 -----------ARNADVAAALREYEEARRPTANKIILANREREKEEWAAA-SRPKTEKSA 271

Query: 161 IF 162
             
Sbjct: 272 AL 273
>d2voua1 c.3.1.2 (A:2-163,A:292-394) Dihydroxypyridine hydroxylase DhpH {Arthrobacter nicotinovorans [TaxId: 29320]} Length = 265 Back     information, alignment and structure
>d1pn0a1 c.3.1.2 (A:1-240,A:342-461) Phenol hydroxylase {Soil-living yeast (Trichosporon cutaneum) [TaxId: 5554]} Length = 360 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query198
d1pn0a1360 Phenol hydroxylase {Soil-living yeast (Trichosporo 99.74
d3c96a1288 Monooxygenase PhzS {Pseudomonas aeruginosa [TaxId: 99.48
d1k0ia1292 p-Hydroxybenzoate hydroxylase, PHBH {Pseudomonas a 98.31
d2voua1265 Dihydroxypyridine hydroxylase DhpH {Arthrobacter n 98.26
d1b5qa1347 Polyamine oxidase {Maize (Zea mays) [TaxId: 4577]} 97.88
d2gmha1380 Electron transfer flavoprotein-ubiquinone oxidored 97.28
d3c96a2111 Monooxygenase PhzS {Pseudomonas aeruginosa [TaxId: 90.71
d2ivda1347 Protoporphyrinogen oxidase {Myxococcus xanthus [Ta 82.4
>d1pn0a1 c.3.1.2 (A:1-240,A:342-461) Phenol hydroxylase {Soil-living yeast (Trichosporon cutaneum) [TaxId: 5554]} Back     information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Phenol hydroxylase
species: Soil-living yeast (Trichosporon cutaneum) [TaxId: 5554]

Probab=99.74  E-value=9.6e-19  Score=143.87  Aligned_cols=81  Identities=26%  Similarity=0.313  Sum_probs=71.5

Q ss_pred             cCcc-CCCEEEecCCCCcCCCCchhhHhhHHHHHHHHHHHHHHHHHhhcCCCCCCCchhHHHHHHHHHHHHHHHHHHHHH
Q 036400           59 GNLS-KGNVTVAGDAMHPMTPDLGQGGCQALEDAVVLGRHIGNLLIKTKGHIATTGDNNVAQAIDGYVKERKWRVTGLVI  137 (198)
Q Consensus        59 ~~w~-~grVvLiGDAAH~m~P~~GqGan~AieDa~~La~~L~~~~~~~~~~~~~~~~~~~~~al~~Ye~~R~~r~~~~~~  137 (198)
                      .+|+ .|||+|||||||+|+|+.|||+|+||+||..|+++|.....+        .  ..+.+|+.|+++|++++..++.
T Consensus       243 ~~~~~~grv~LvGDAAH~~~P~~GqG~n~al~Da~~La~~l~~~~~~--------~--~~~~~L~~Y~~~R~~~~~~~~~  312 (360)
T d1pn0a1         243 EKFSKDERVFIAGDACHTHSPKAGQGMNTSMMDTYNLGWKLGLVLTG--------R--AKRDILKTYEEERQPFAQALID  312 (360)
T ss_dssp             SCSEETTTEEECGGGTEECCSTTCCHHHHHHHHHHHHHHHHHHHHTT--------C--BCGGGGHHHHHHHHHHHHHHHH
T ss_pred             hheeecCcEEEccCcccccccccCCCCcccHHHHHHHHHHHHHHhcC--------C--ChHHHHHHHHHHHHHHHHHHHH
Confidence            4675 689999999999999999999999999999999999876643        2  4567899999999999999999


Q ss_pred             HHHHhhhhhcCC
Q 036400          138 GSYLSGWVQDGG  149 (198)
Q Consensus       138 ~s~~~~~~~~~~  149 (198)
                      .++.+.++++..
T Consensus       313 ~s~~~~~~~~~~  324 (360)
T d1pn0a1         313 FDHQFSRLFSGR  324 (360)
T ss_dssp             HHHHHHHHHHSC
T ss_pred             HHHHHHHHHCCC
Confidence            999999988654
>d3c96a1 c.3.1.2 (A:4-182,A:294-402) Monooxygenase PhzS {Pseudomonas aeruginosa [TaxId: 287]} Back     information, alignment and structure
>d1k0ia1 c.3.1.2 (A:1-173,A:276-394) p-Hydroxybenzoate hydroxylase, PHBH {Pseudomonas aeruginosa [TaxId: 287]} Back     information, alignment and structure
>d2voua1 c.3.1.2 (A:2-163,A:292-394) Dihydroxypyridine hydroxylase DhpH {Arthrobacter nicotinovorans [TaxId: 29320]} Back     information, alignment and structure
>d1b5qa1 c.3.1.2 (A:5-293,A:406-463) Polyamine oxidase {Maize (Zea mays) [TaxId: 4577]} Back     information, alignment and structure
>d2gmha1 c.3.1.2 (A:4-236,A:336-482) Electron transfer flavoprotein-ubiquinone oxidoreductase, EFT-QO {Pig (Sus scrofa) [TaxId: 9823]} Back     information, alignment and structure
>d3c96a2 d.16.1.2 (A:183-293) Monooxygenase PhzS {Pseudomonas aeruginosa [TaxId: 287]} Back     information, alignment and structure
>d2ivda1 c.3.1.2 (A:10-306,A:415-464) Protoporphyrinogen oxidase {Myxococcus xanthus [TaxId: 34]} Back     information, alignment and structure