Citrus Sinensis ID: 036402

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440
MSHAFTAIVGSGILALPWSVAQLGWILGLMILVAFAAITYYTAILLSDCYRTPDPINGSRNYTYMDAVRALLGPKNVVVCGIMQYSLLWGTMIGYTITTAISVANLKRSTCYHKKGENAKCHVSGHLYMLTYGAIETILSQCPNLEKATFLSIIAAVTSLVYSSIALCLSIAKIFSHRKIKGNLMVMKAGVDVASSKKIWHAFQALGNIAFAYTYSMMLLEIQDTLKSPPPENKMMKKVSLYAIGATALFYISLGCMGYAAYGTEAPGNILTGFYNVLWLVDIANIAVIIHLIGAYQVFAQPIFAMHEKWLESRWPTSSFNNIYTIRFPLIIKNFTVRFTLARLLLRTAFVIFTTGVAMMFPFFNAILGLLGSISFWPLTVHLPLRMYIEQAKIKRGSLKWFMLQILGLICLVVTLVSAIGSIADISDLLKHAKLLHIQL
cccccccHHcHHHcHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHcccccccccccccccHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHEEEEEEEEEcccccccccccccccccccccHHHHHHHHHHHHHHHHHHccccccHHHHHHHccccccccccccEEEEEHHHHHHHHHHHHHHEEcccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccc
cccEEEEEHcHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccHHHHHHHHHHccccEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccEEEEEEEEccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccEEEcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccEccccccccccccEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccEEEcHHHHHHEHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccEccc
MSHAFTAIVGSGILALPWSVAQLGWILGLMILVAFAAITYYTAILLsdcyrtpdpingsrnytYMDAVRALLGPKNVVVCGIMQYSLLWGTMIGYTITTAISVANLkrstcyhkkgenakchvsghLYMLTYGAIETIlsqcpnlekaTFLSIIAAVTSLVYSSIALCLSIAKIFSHRKIKGNLMVMKAGVDVASSKKIWHAFQALGNIAFAYTYSMMLLEIQdtlkspppenkmmkkVSLYAIGATALFYISLGCmgyaaygteapgnilTGFYNVLWLVDIANIAVIIHLIGAYQVFAQPIFAMHEKWlesrwptssfnniytirfpliiKNFTVRFTLARLLLRTAFVIFTTGVAMMFPFFNAILGLlgsisfwpltvHLPLRMYIEQAKIKRGSLKWFMLQILGLICLVVTLVSAIGSIADISDLLKHAKLLHIQL
MSHAFTAIVGSGILALPWSVAQLGWILGLMILVAFAAITYYTAILLSDCYRTPDPINGSRNYTYMDAVRALLGPKNVVVCGIMQYSLLWGTMIGYTITTAISVANLKRSTCYHKKgenakchvsGHLYMLTYGAIETILSQCPNLEKATFLSIIAAVTSLVYSSIALCLSIAKIFSHRKIKGNLMVMKAGVDVASSKKIWHAFQALGNIAFAYTYSMMLLEIQDTLKSPPPENKMMKKVSLYAIGATALFYISLGCMGYAAYGTEAPGNILTGFYNVLWLVDIANIAVIIHLIGAYQVFAQPIFAMHEKWLESRWPTSSFNNIYTIRFPLIIKNFTVRFTLARLLLRTAFVIFTTGVAMMFPFFNAILGLLGSISFWPLTVHLPLRMYIEQAKIKRGSLKWFMLQILGLICLVVTLVSAIGSIADISDLLKHAKLLHIQL
MSHAFTAIVGSGILALPWSVAQLGWILGLMILVAFAAITYYTAILLSDCYRTPDPINGSRNYTYMDAVRALLGPKNVVVCGIMQYSLLWGTMIGYTITTAISVANLKRSTCYHKKGENAKCHVSGHLYMLTYGAIETILSQCPNLEKATFLSIIAAVTSLVYSSIALCLSIAKIFSHRKIKGNLMVMKAGVDVASSKKIWHAFQALGNIAFAYTYSMMLLEIQDTLKSPPPENKMMKKVSLYAIGATALFYISLGCMGYAAYGTEAPGNILTGFYNVLWLVDIANIAVIIHLIGAYQVFAQPIFAMHEKWLESRWPTSSFNNIYTIRFPLIIKNftvrftlarlllrtafvIFTTGVAMMFPFFNAILGLLGSISFWPLTVHLPLRMYIEQAKIKRGSLKWFMLQILGLICLVVTLVSAIGSIADISDLLKHAKLLHIQL
***AFTAIVGSGILALPWSVAQLGWILGLMILVAFAAITYYTAILLSDCYRTPDPINGSRNYTYMDAVRALLGPKNVVVCGIMQYSLLWGTMIGYTITTAISVANLKRSTCYHKKGENAKCHVSGHLYMLTYGAIETILSQCPNLEKATFLSIIAAVTSLVYSSIALCLSIAKIFSHRKIKGNLMVMKAGVDVASSKKIWHAFQALGNIAFAYTYSMMLLEIQDT***********KKVSLYAIGATALFYISLGCMGYAAYGTEAPGNILTGFYNVLWLVDIANIAVIIHLIGAYQVFAQPIFAMHEKWLESRWPTSSFNNIYTIRFPLIIKNFTVRFTLARLLLRTAFVIFTTGVAMMFPFFNAILGLLGSISFWPLTVHLPLRMYIEQAKIKRGSLKWFMLQILGLICLVVTLVSAIGSIADISDLLKHAKLLHI**
MSHAFTAIVGSGILALPWSVAQLGWILGLMILVAFAAITYYTAILLSDCYRTPDPINGSRNYTYMDAVRALLGPKNVVVCGIMQYSLLWGTMIGYTITTAISVANLKRSTCYHKKGENAKCHVSGHLYMLTYGAIETILSQCPNLEKATFLSIIAAVTSLVYSSIALCLSIAKIFSHRKIKGNLMVMKAGVDVASSKKIWHAFQALGNIAFAYTYSMMLLEIQDTLK******KMMKKVSLYAIGATALFYISLGCMGYAAYGTEAPGNILTGFYNVLWLVDIANIAVIIHLIGAYQVFAQPIFAMHEKWLESRWPTSSFNNIYTIRFPLIIKNFTVRFTLARLLLRTAFVIFTTGVAMMFPFFNAILGLLGSISFWPLTVHLPLRMYIEQAKIKRGSLKWFMLQILGLICLVVTLVSAIGSIADISDLLKHAKLLHIQ*
MSHAFTAIVGSGILALPWSVAQLGWILGLMILVAFAAITYYTAILLSDCYRTPDPINGSRNYTYMDAVRALLGPKNVVVCGIMQYSLLWGTMIGYTITTAISVANLKRSTCYHKKGENAKCHVSGHLYMLTYGAIETILSQCPNLEKATFLSIIAAVTSLVYSSIALCLSIAKIFSHRKIKGNLMVMKAGVDVASSKKIWHAFQALGNIAFAYTYSMMLLEIQDTLKSPPPENKMMKKVSLYAIGATALFYISLGCMGYAAYGTEAPGNILTGFYNVLWLVDIANIAVIIHLIGAYQVFAQPIFAMHEKWLESRWPTSSFNNIYTIRFPLIIKNFTVRFTLARLLLRTAFVIFTTGVAMMFPFFNAILGLLGSISFWPLTVHLPLRMYIEQAKIKRGSLKWFMLQILGLICLVVTLVSAIGSIADISDLLKHAKLLHIQL
MSHAFTAIVGSGILALPWSVAQLGWILGLMILVAFAAITYYTAILLSDCYRTPDPINGSRNYTYMDAVRALLGPKNVVVCGIMQYSLLWGTMIGYTITTAISVANLKRSTCYHKKGENAKCHVSGHLYMLTYGAIETILSQCPNLEKATFLSIIAAVTSLVYSSIALCLSIAKIFSHRKIKGNLMVMKAGVDVASSKKIWHAFQALGNIAFAYTYSMMLLEIQDTLKSPPPENKMMKKVSLYAIGATALFYISLGCMGYAAYGTEAPGNILTGFYNVLWLVDIANIAVIIHLIGAYQVFAQPIFAMHEKWLESRWPTSSFNNIYTIRFPLIIKNFTVRFTLARLLLRTAFVIFTTGVAMMFPFFNAILGLLGSISFWPLTVHLPLRMYIEQAKIKRGSLKWFMLQILGLICLVVTLVSAIGSIADISDLLKHAKLLHI**
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MSHAFTAIVGSGILALPWSVAQLGWILGLMILVAFAAITYYTAILLSDCYRTPDPINGSRNYTYMDAVRALLGPKNVVVCGIMQYSLLWGTMIGYTITTAISVANLKRSTCYHKKGENAKCHVSGHLYMLTYGAIETILSQCPNLEKATFLSIIAAVTSLVYSSIALCLSIAKIFSHRKIKGNLMVMKAGVDVASSKKIWHAFQALGNIAFAYTYSMMLLEIQDTLKSPPPENKMMKKVSLYAIGATALFYISLGCMGYAAYGTEAPGNILTGFYNVLWLVDIANIAVIIHLIGAYQVFAQPIFAMHEKWLESRWPTSSFNNIYTIRFPLIIKNFTVRFTLARLLLRTAFVIFTTGVAMMFPFFNAILGLLGSISFWPLTVHLPLRMYIEQAKIKRGSLKWFMLQILGLICLVVTLVSAIGSIADISDLLKHAKLLHIQL
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query440 2.2.26 [Sep-21-2011]
O80592475 Amino acid permease 8 OS= yes no 0.977 0.905 0.522 1e-132
Q42400485 Amino acid permease 1 OS= no no 0.977 0.886 0.5 1e-127
Q9FN04466 Amino acid permease 4 OS= no no 0.977 0.922 0.488 1e-124
Q38967493 Amino acid permease 2 OS= no no 0.959 0.855 0.485 1e-124
Q39134476 Amino acid permease 3 OS= no no 0.929 0.859 0.512 1e-122
P92934481 Amino acid permease 6 OS= no no 0.977 0.893 0.497 1e-122
Q8GUM3480 Amino acid permease 5 OS= no no 0.988 0.906 0.475 1e-120
Q9FF99467 Probable amino acid perme no no 0.952 0.897 0.447 2e-98
Q9FKS8446 Lysine histidine transpor no no 0.881 0.869 0.294 2e-38
O22719451 Lysine histidine transpor no no 0.9 0.878 0.292 1e-36
>sp|O80592|AAP8_ARATH Amino acid permease 8 OS=Arabidopsis thaliana GN=AAP8 PE=1 SV=1 Back     alignment and function desciption
 Score =  471 bits (1212), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 228/436 (52%), Positives = 309/436 (70%), Gaps = 6/436 (1%)

Query: 2   SHAFTAIVGSGILALPWSVAQLGWILGLMILVAFAAITYYTAILLSDCYRTPDPINGSRN 61
           +H  TA++GSG+L+L W++AQLGW+ G  +LVAFA ITYYT+ LL+DCYR+PD I G+RN
Sbjct: 37  AHIITAVIGSGVLSLAWAIAQLGWVAGTTVLVAFAIITYYTSTLLADCYRSPDSITGTRN 96

Query: 62  YTYMDAVRALLGPKNVVVCGIMQYSLLWGTMIGYTITTAISVANLKRSTCYHKKGENAKC 121
           Y YM  VR+ LG K V +CG+ QY  L G  IGYTIT +IS+  + +S CYH KG  AKC
Sbjct: 97  YNYMGVVRSYLGGKKVQLCGVAQYVNLVGVTIGYTITASISLVAIGKSNCYHDKGHKAKC 156

Query: 122 HVSGHLYMLTYGAIETILSQCPNLEKATFLSIIAAVTSLVYSSIALCLSIAKIFSHRKIK 181
            VS + YM  +G ++ ILSQ PN  K +FLSIIAAV S  Y+SI + L+IA + S +  K
Sbjct: 157 SVSNYPYMAAFGIVQIILSQLPNFHKLSFLSIIAAVMSFSYASIGIGLAIATVASGKIGK 216

Query: 182 GNLMVMKAGVDVASSKKIWHAFQALGNIAFAYTYSMMLLEIQDTLKSPPPENKMMKKVSL 241
             L     GVDV +S+K+W  FQA+G+IAF+Y ++ +L+EIQDTL+S PPENK+MK+ SL
Sbjct: 217 TELTGTVIGVDVTASEKVWKLFQAIGDIAFSYAFTTILIEIQDTLRSSPPENKVMKRASL 276

Query: 242 YAIGATALFYISLGCMGYAAYGTEAPGNILT--GFYNVLWLVDIANIAVIIHLIGAYQVF 299
             +  T +FYI  GC+GYAA+G +APG+ LT  GFY   WL+D AN  + +HLIGAYQV+
Sbjct: 277 VGVSTTTVFYILCGCIGYAAFGNQAPGDFLTDFGFYEPYWLIDFANACIALHLIGAYQVY 336

Query: 300 AQPIFAMHEKWLESRWPTSSF-NNIYTIRFPLIIKNFTVRFTLARLLLRTAFVIFTTGVA 358
           AQP F   E+    +WP S+F N  Y+ + PL+ K    R  L RL+ RT +V+ TT VA
Sbjct: 337 AQPFFQFVEENCNKKWPQSNFINKEYSSKVPLLGK---CRVNLFRLVWRTCYVVLTTFVA 393

Query: 359 MMFPFFNAILGLLGSISFWPLTVHLPLRMYIEQAKIKRGSLKWFMLQILGLICLVVTLVS 418
           M+FPFFNAILGLLG+ +FWPLTV+ P+ M+I QAK+K+ S +W  L +L L+CL+V+ ++
Sbjct: 394 MIFPFFNAILGLLGAFAFWPLTVYFPVAMHIAQAKVKKYSRRWLALNLLVLVCLIVSALA 453

Query: 419 AIGSIADISDLLKHAK 434
           A+GSI  + + +K  K
Sbjct: 454 AVGSIIGLINSVKSYK 469
Amino acid-proton symporter. Stereospecific transporter with a broad specificity for glutamate, aspartate and neutral and acidic amino acids.
Arabidopsis thaliana (taxid: 3702)
>sp|Q42400|AAP1_ARATH Amino acid permease 1 OS=Arabidopsis thaliana GN=AAP1 PE=1 SV=1 Back     alignment and function description
>sp|Q9FN04|AAP4_ARATH Amino acid permease 4 OS=Arabidopsis thaliana GN=AAP4 PE=1 SV=1 Back     alignment and function description
>sp|Q38967|AAP2_ARATH Amino acid permease 2 OS=Arabidopsis thaliana GN=AAP2 PE=1 SV=1 Back     alignment and function description
>sp|Q39134|AAP3_ARATH Amino acid permease 3 OS=Arabidopsis thaliana GN=AAP3 PE=1 SV=2 Back     alignment and function description
>sp|P92934|AAP6_ARATH Amino acid permease 6 OS=Arabidopsis thaliana GN=AAP6 PE=1 SV=1 Back     alignment and function description
>sp|Q8GUM3|AAP5_ARATH Amino acid permease 5 OS=Arabidopsis thaliana GN=AAP5 PE=1 SV=1 Back     alignment and function description
>sp|Q9FF99|AAP7_ARATH Probable amino acid permease 7 OS=Arabidopsis thaliana GN=AAP7 PE=1 SV=1 Back     alignment and function description
>sp|Q9FKS8|LHT1_ARATH Lysine histidine transporter 1 OS=Arabidopsis thaliana GN=LHT1 PE=1 SV=1 Back     alignment and function description
>sp|O22719|LHTL3_ARATH Lysine histidine transporter-like 3 OS=Arabidopsis thaliana GN=At1g61270 PE=3 SV=2 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query440
224136063460 amino acid permease [Populus trichocarpa 0.995 0.952 0.687 1e-180
255561528461 amino acid transporter, putative [Ricinu 0.995 0.950 0.669 1e-171
225460326455 PREDICTED: amino acid permease 2-like [V 0.993 0.960 0.619 1e-162
296089474431 unnamed protein product [Vitis vinifera] 0.977 0.997 0.619 1e-160
296089473437 unnamed protein product [Vitis vinifera] 0.993 1.0 0.65 1e-159
225460324454 PREDICTED: amino acid permease 8-like [V 0.993 0.962 0.65 1e-159
242059423470 hypothetical protein SORBIDRAFT_03g04159 0.997 0.934 0.588 1e-157
125528583466 hypothetical protein OsI_04651 [Oryza sa 0.990 0.935 0.589 1e-156
115441403466 Os01g0878700 [Oryza sativa Japonica Grou 0.990 0.935 0.589 1e-156
293332489461 uncharacterized protein LOC100383250 [Ze 0.988 0.943 0.577 1e-154
>gi|224136063|ref|XP_002327371.1| amino acid permease [Populus trichocarpa] gi|222835741|gb|EEE74176.1| amino acid permease [Populus trichocarpa] Back     alignment and taxonomy information
 Score =  638 bits (1646), Expect = e-180,   Method: Compositional matrix adjust.
 Identities = 302/439 (68%), Positives = 361/439 (82%), Gaps = 1/439 (0%)

Query: 2   SHAFTAIVGSGILALPWSVAQLGWILGLMILVAFAAITYYTAILLSDCYRTPDPINGSRN 61
           +HAFTA+VG+GILALPWSVAQLGWILG  +LV FA +TYY A LL DCYRTPDP+ G RN
Sbjct: 23  AHAFTAVVGAGILALPWSVAQLGWILGPFVLVFFAIVTYYIASLLCDCYRTPDPVTGKRN 82

Query: 62  YTYMDAVRALLGPKNVVVCGIMQYSLLWGTMIGYTITTAISVANLKRSTCYHKKGENAKC 121
           YTY+ AVR LLGPK+ ++CGI+QYS+LWGTMIGYT+TTAIS+A++KRSTC+H KG NAKC
Sbjct: 83  YTYIHAVRELLGPKSELICGILQYSILWGTMIGYTVTTAISIASVKRSTCFHDKGHNAKC 142

Query: 122 HVSGHLYMLTYGAIETILSQCPNLEKATFLSIIAAVTSLVYSSIALCLSIAKIFSHRKIK 181
            VSG+LYML YGAIE  LSQCPNLEK   LS+IA+VTS  Y+ IALCLS AK+ S+ + K
Sbjct: 143 GVSGNLYMLIYGAIEIFLSQCPNLEKVAILSVIASVTSFAYALIALCLSTAKLSSNHEFK 202

Query: 182 GNLMVMKAGVDVASSKKIWHAFQALGNIAFAYTYSMMLLEIQDTLKSPPPENKMMKKVSL 241
           G+LMV       A+S++ W AFQALGNIA AYTY M+LLEIQDTLKS PPENK+MK+VS+
Sbjct: 203 GSLMVAMVVNTEATSERFWQAFQALGNIALAYTYCMLLLEIQDTLKSVPPENKVMKRVSM 262

Query: 242 YAIGATALFYISLGCMGYAAYGTEAPGNILTGFYNVLWLVDIANIAVIIHLIGAYQVFAQ 301
           Y +  TA FYISLGC+GYAA+G + PGNIL+GFY   WLVD+ANIAVIIHLIGAYQV+AQ
Sbjct: 263 YVVVGTAFFYISLGCIGYAAFGNDVPGNILSGFYEPFWLVDMANIAVIIHLIGAYQVYAQ 322

Query: 302 PIFAMHEKWLESRWPTSSFNNIYTIRFPLIIKNFTVRFTLARLLLRTAFVIFTTGVAMMF 361
           P+FA++EKW+ SRWPTSSFN IYTIRFP   K  ++  T+ RL LR  FV+ TT VAMMF
Sbjct: 323 PLFAINEKWIGSRWPTSSFNKIYTIRFPCSRKG-SLHLTINRLFLRPIFVVITTAVAMMF 381

Query: 362 PFFNAILGLLGSISFWPLTVHLPLRMYIEQAKIKRGSLKWFMLQILGLICLVVTLVSAIG 421
           PFFNAILGLLGS+SFWPLTV+ P+ MYI QAKIKRGS  WF LQ LG +CL+VT+VS IG
Sbjct: 382 PFFNAILGLLGSVSFWPLTVYFPISMYIVQAKIKRGSCHWFGLQALGFVCLIVTVVSGIG 441

Query: 422 SIADISDLLKHAKLLHIQL 440
           S+A + + LK A+L HI++
Sbjct: 442 SVAGMVEFLKKARLFHIEI 460

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|255561528|ref|XP_002521774.1| amino acid transporter, putative [Ricinus communis] gi|223538987|gb|EEF40584.1| amino acid transporter, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|225460326|ref|XP_002280172.1| PREDICTED: amino acid permease 2-like [Vitis vinifera] Back     alignment and taxonomy information
>gi|296089474|emb|CBI39293.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|296089473|emb|CBI39292.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|225460324|ref|XP_002280161.1| PREDICTED: amino acid permease 8-like [Vitis vinifera] Back     alignment and taxonomy information
>gi|242059423|ref|XP_002458857.1| hypothetical protein SORBIDRAFT_03g041590 [Sorghum bicolor] gi|241930832|gb|EES03977.1| hypothetical protein SORBIDRAFT_03g041590 [Sorghum bicolor] Back     alignment and taxonomy information
>gi|125528583|gb|EAY76697.1| hypothetical protein OsI_04651 [Oryza sativa Indica Group] Back     alignment and taxonomy information
>gi|115441403|ref|NP_001044981.1| Os01g0878700 [Oryza sativa Japonica Group] gi|56784616|dbj|BAD81663.1| putative amino acid carrier [Oryza sativa Japonica Group] gi|56784746|dbj|BAD81895.1| putative amino acid carrier [Oryza sativa Japonica Group] gi|113534512|dbj|BAF06895.1| Os01g0878700 [Oryza sativa Japonica Group] gi|215694431|dbj|BAG89448.1| unnamed protein product [Oryza sativa Japonica Group] gi|215767443|dbj|BAG99671.1| unnamed protein product [Oryza sativa Japonica Group] gi|215768356|dbj|BAH00585.1| unnamed protein product [Oryza sativa Japonica Group] Back     alignment and taxonomy information
>gi|293332489|ref|NP_001169382.1| uncharacterized protein LOC100383250 [Zea mays] gi|224029009|gb|ACN33580.1| unknown [Zea mays] gi|413951749|gb|AFW84398.1| hypothetical protein ZEAMMB73_110286 [Zea mays] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query440
TAIR|locus:2201871475 AAP8 "amino acid permease 8" [ 0.977 0.905 0.506 8.8e-118
TAIR|locus:2016600485 AAP1 "amino acid permease 1" [ 0.977 0.886 0.483 9.4e-114
TAIR|locus:2163981466 AAP4 "amino acid permease 4" [ 0.959 0.905 0.478 3.2e-113
TAIR|locus:2031402476 AAP3 "amino acid permease 3" [ 0.977 0.903 0.489 1.1e-112
TAIR|locus:2184707493 AAP2 "amino acid permease 2" [ 0.959 0.855 0.474 3.6e-112
TAIR|locus:2168912481 AAP6 "amino acid permease 6" [ 0.977 0.893 0.481 1.6e-111
TAIR|locus:2205876480 AAP5 "amino acid permease 5" [ 0.968 0.887 0.465 1.3e-107
TAIR|locus:2172868467 AAP7 "amino acid permease 7" [ 0.95 0.895 0.427 5.2e-97
UNIPROTKB|Q85V22441 ht "Histidine amino acid trans 0.681 0.680 0.319 9.7e-46
TAIR|locus:2024071441 LHT2 "lysine histidine transpo 0.697 0.696 0.300 1.2e-43
TAIR|locus:2201871 AAP8 "amino acid permease 8" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1160 (413.4 bits), Expect = 8.8e-118, P = 8.8e-118
 Identities = 221/436 (50%), Positives = 300/436 (68%)

Query:     2 SHAFTAIVGSGILALPWSVAQLGWILGLMILVAFAAITYYTAILLSDCYRTPDPINGSRN 61
             +H  TA++GSG+L+L W++AQLGW+ G  +LVAFA ITYYT+ LL+DCYR+PD I G+RN
Sbjct:    37 AHIITAVIGSGVLSLAWAIAQLGWVAGTTVLVAFAIITYYTSTLLADCYRSPDSITGTRN 96

Query:    62 YTYMDAVRALLGPKNVVVCGIMQYSLLWGTMIGYTITTAISVANLKRSTCYHKKGENAKC 121
             Y YM  VR+ LG K V +CG+ QY  L G  IGYTIT +IS+  + +S CYH KG  AKC
Sbjct:    97 YNYMGVVRSYLGGKKVQLCGVAQYVNLVGVTIGYTITASISLVAIGKSNCYHDKGHKAKC 156

Query:   122 HVSGHLYMLTYGAIETILSQCPNLEKATFLSIIAAVTSLVYSSIALCLSIAKIFSHRKIK 181
              VS + YM  +G ++ ILSQ PN  K +FLSIIAAV S  Y+SI + L+IA + S +  K
Sbjct:   157 SVSNYPYMAAFGIVQIILSQLPNFHKLSFLSIIAAVMSFSYASIGIGLAIATVASGKIGK 216

Query:   182 GNLMVMKAGVDVASSKKIWHAFQALGNIAFAYTYSMMLLEIQDTLKSPPPENKMMKKVSL 241
               L     GVDV +S+K+W  FQA+G+IAF+Y ++ +L+EIQDTL+S PPENK+MK+ SL
Sbjct:   217 TELTGTVIGVDVTASEKVWKLFQAIGDIAFSYAFTTILIEIQDTLRSSPPENKVMKRASL 276

Query:   242 YAIGATALFYISLGCMGYAAYGTEAPGNILT--GFYNVLWLVDIANIAVIIHLIGAYQVF 299
               +  T +FYI  GC+GYAA+G +APG+ LT  GFY   WL+D AN  + +HLIGAYQV+
Sbjct:   277 VGVSTTTVFYILCGCIGYAAFGNQAPGDFLTDFGFYEPYWLIDFANACIALHLIGAYQVY 336

Query:   300 AQPIFAMHEKWLESRWPTSSF-NNIYTIRFPLIIKNXXXXXXXXXXXXXXXXXIFTTGVA 358
             AQP F   E+    +WP S+F N  Y+ + PL+ K                  + TT VA
Sbjct:   337 AQPFFQFVEENCNKKWPQSNFINKEYSSKVPLLGK---CRVNLFRLVWRTCYVVLTTFVA 393

Query:   359 MMFPFFNAILGLLGSISFWPLTVHLPLRMYIEQAKIKRGSLKWFMLQILGLICLVVTLVS 418
             M+FPFFNAILGLLG+ +FWPLTV+ P+ M+I QAK+K+ S +W  L +L L+CL+V+ ++
Sbjct:   394 MIFPFFNAILGLLGAFAFWPLTVYFPVAMHIAQAKVKKYSRRWLALNLLVLVCLIVSALA 453

Query:   419 AIGSIADISDLLKHAK 434
             A+GSI  + + +K  K
Sbjct:   454 AVGSIIGLINSVKSYK 469
GO:0005886 "plasma membrane" evidence=ISM
GO:0015171 "amino acid transmembrane transporter activity" evidence=IGI;ISS
GO:0006865 "amino acid transport" evidence=IGI
GO:0016020 "membrane" evidence=ISS
TAIR|locus:2016600 AAP1 "amino acid permease 1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2163981 AAP4 "amino acid permease 4" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2031402 AAP3 "amino acid permease 3" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2184707 AAP2 "amino acid permease 2" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2168912 AAP6 "amino acid permease 6" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2205876 AAP5 "amino acid permease 5" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2172868 AAP7 "amino acid permease 7" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
UNIPROTKB|Q85V22 ht "Histidine amino acid transporter" [Oryza sativa Indica Group (taxid:39946)] Back     alignment and assigned GO terms
TAIR|locus:2024071 LHT2 "lysine histidine transporter 2" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
O80592AAP8_ARATHNo assigned EC number0.52290.97720.9052yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query440
pfam01490406 pfam01490, Aa_trans, Transmembrane amino acid tran 1e-87
COG0814415 COG0814, SdaC, Amino acid permeases [Amino acid tr 3e-08
>gnl|CDD|216528 pfam01490, Aa_trans, Transmembrane amino acid transporter protein Back     alignment and domain information 
 Score =  272 bits (698), Expect = 1e-87
 Identities = 129/420 (30%), Positives = 206/420 (49%), Gaps = 32/420 (7%)

Query: 6   TAIVGSGILALPWSVAQLGWILGLMILVAFAAITYYTAILLSDCYRTPDPINGSRNYTYM 65
            AI+G+G+L+LP++  QLGWI GL++LV    I+ YT  LL  C +  D + G R  +Y 
Sbjct: 14  KAIIGAGVLSLPYAFKQLGWIPGLILLVIVGLISLYTLHLLVQCSKYVDKVKGKRRKSYG 73

Query: 66  DAVRALLGPKNVVVCGIMQYSLLWGTMIGYTITTAISVANLKRSTCYHKKGENAKCHVSG 125
           D    L GPK  ++        L+G  I Y I    ++  +  S           CH+S 
Sbjct: 74  DLGYRLFGPKGKLLILFAILVNLFGVCISYLIFAGDNLPAIFDSFFDT-------CHISL 126

Query: 126 HLYMLTYGAIETILSQCPNLEKATFLSIIAAVTSLVYSSIALCLSIAKIFSHRKIKGNLM 185
             +++ +G I   LS  PNL   + LS++AAV     SS+ + + +  +     +    +
Sbjct: 127 VYFIIIFGLIFIPLSFIPNLSALSILSLVAAV-----SSLYIVILVLSVAELGVLTAQGV 181

Query: 186 VMKAGVDVASSKKIWHAFQALGNIAFAYTYSMMLLEIQDTLKSPPPENKMMKKVSLYAIG 245
                    ++ K+   F A+G I FA+    +LL IQ+T+KSP      M KV L AI 
Sbjct: 182 GSLG---AKTNIKLARLFLAIGIIVFAFEGHAVLLPIQNTMKSPSKFKA-MTKVLLTAII 237

Query: 246 ATALFYISLGCMGYAAYGTEAPGNILTGFYNVLWLVDIANIAVIIHLIGAYQVFAQPIFA 305
              + YI +G +GY A+G    GNIL       WL+DIAN+ +++HL+ +Y + A PI  
Sbjct: 238 IVTVLYILVGLVGYLAFGNNVKGNILLNLPKSDWLIDIANLLLVLHLLLSYPLQAFPIRQ 297

Query: 306 MHEKWLESRWPTSSFNNIYTIRFPLIIKNFTVRFTLARLLLRTAFVIFTTGVAMMFPFFN 365
           + E  L  +  +   N                +  L R+++R+  V+ T  +A+  PF  
Sbjct: 298 IVENLLFRKGASGKHNP---------------KSKLLRVVIRSGLVVITYLIAISVPFLG 342

Query: 366 AILGLLGSISFWPLTVHLPLRMYIEQAKIKRGSLKW-FMLQILGLICLVVTLVSAIGSIA 424
             L L+G+ S  PLT  LP   +++  K K+ SL+  +   IL +IC+V+ L+     +A
Sbjct: 343 DFLSLVGATSGAPLTFILPPLFHLKLKKTKKKSLEKLWKPDILDVICIVIGLLLMAYGVA 402

This transmembrane region is found in many amino acid transporters including UNC-47 and MTR. UNC-47 encodes a vesicular amino butyric acid (GABA) transporter, (VGAT). UNC-47 is predicted to have 10 transmembrane domains. MTR is a N system amino acid transporter system protein involved in methyltryptophan resistance. Other members of this family include proline transporters and amino acid permeases. Length = 406
>gnl|CDD|223884 COG0814, SdaC, Amino acid permeases [Amino acid transport and metabolism] Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 440
PTZ00206467 amino acid transporter; Provisional 100.0
KOG1303437 consensus Amino acid transporters [Amino acid tran 100.0
KOG1304449 consensus Amino acid transporters [Amino acid tran 100.0
PF01490409 Aa_trans: Transmembrane amino acid transporter pro 100.0
PLN03074473 auxin influx permease; Provisional 100.0
KOG1305411 consensus Amino acid transporter protein [Amino ac 100.0
KOG4303524 consensus Vesicular inhibitory amino acid transpor 100.0
COG0814415 SdaC Amino acid permeases [Amino acid transport an 100.0
PRK10483414 tryptophan permease; Provisional 99.95
PRK15132403 tyrosine transporter TyrP; Provisional 99.95
PRK09664415 tryptophan permease TnaB; Provisional 99.94
PF03222394 Trp_Tyr_perm: Tryptophan/tyrosine permease family; 99.94
TIGR00837381 araaP aromatic amino acid transport protein. aroma 99.93
PRK13629443 threonine/serine transporter TdcC; Provisional 99.91
TIGR00814397 stp serine transporter. The HAAAP family includes 99.88
PRK10655438 potE putrescine transporter; Provisional 99.55
TIGR03810468 arg_ornith_anti arginine/ornithine antiporter. Mem 99.52
PRK10435435 cadB lysine/cadaverine antiporter; Provisional 99.5
PRK11021410 putative transporter; Provisional 99.49
TIGR01773452 GABAperm gamma-aminobutyrate permease. GabP is hig 99.49
TIGR00905473 2A0302 transporter, basic amino acid/polyamine ant 99.49
PRK10644445 arginine:agmatin antiporter; Provisional 99.47
PRK10197446 gamma-aminobutyrate transporter; Provisional 99.47
PRK10238456 aromatic amino acid transporter; Provisional 99.46
TIGR00909429 2A0306 amino acid transporter. 99.45
PRK10249458 phenylalanine transporter; Provisional 99.45
PRK15049499 L-asparagine permease; Provisional 99.44
PRK10746461 putative transport protein YifK; Provisional 99.42
TIGR00913478 2A0310 amino acid permease (yeast). 99.42
TIGR00908442 2A0305 ethanolamine permease. The three genes used 99.41
PRK11049469 D-alanine/D-serine/glycine permease; Provisional 99.41
PRK10580457 proY putative proline-specific permease; Provision 99.4
PRK11387471 S-methylmethionine transporter; Provisional 99.39
PF13520426 AA_permease_2: Amino acid permease; PDB: 3NCY_A 3G 99.38
PRK10836489 lysine transporter; Provisional 99.36
TIGR00912359 2A0309 spore germination protein (amino acid perme 99.35
KOG1287479 consensus Amino acid transporters [Amino acid tran 99.32
TIGR00930 953 2a30 K-Cl cotransporter. 99.3
PRK11357445 frlA putative fructoselysine transporter; Provisio 99.29
COG1113462 AnsP Gamma-aminobutyrate permease and related perm 99.28
TIGR00906557 2A0303 cationic amino acid transport permease. 99.27
TIGR00911501 2A0308 L-type amino acid transporter. 99.2
TIGR03813474 put_Glu_GABA_T putative glutamate/gamma-aminobutyr 99.14
PRK15238496 inner membrane transporter YjeM; Provisional 99.11
COG0531466 PotE Amino acid transporters [Amino acid transport 99.03
TIGR00907482 2A0304 amino acid permease (GABA permease). 99.02
TIGR00910507 2A0307_GadC glutamate:gamma-aminobutyrate antiport 99.0
TIGR03428475 ureacarb_perm permease, urea carboxylase system. A 98.92
PF03845320 Spore_permease: Spore germination protein; InterPr 98.9
KOG3832319 consensus Predicted amino acid transporter [Genera 98.9
PF00324478 AA_permease: Amino acid permease; InterPro: IPR004 98.83
KOG1286554 consensus Amino acid transporters [Amino acid tran 98.73
COG0833541 LysP Amino acid transporters [Amino acid transport 98.64
COG3949349 Uncharacterized membrane protein [Function unknown 98.39
KOG1289550 consensus Amino acid transporters [Amino acid tran 98.25
PRK11375484 allantoin permease; Provisional 98.04
TIGR00800442 ncs1 NCS1 nucleoside transporter family. The NCS1 98.03
TIGR02358386 thia_cytX probable hydroxymethylpyrimidine transpo 97.98
PRK12488549 acetate permease; Provisional 97.84
PF00474406 SSF: Sodium:solute symporter family; InterPro: IPR 97.79
COG0591493 PutP Na+/proline symporter [Amino acid transport a 97.78
PRK09442483 panF sodium/panthothenate symporter; Provisional 97.67
TIGR00813407 sss transporter, SSS family. have different number 97.64
COG1457442 CodB Purine-cytosine permease and related proteins 97.59
COG4147529 DhlC Predicted symporter [General function predict 97.52
PRK11017404 codB cytosine permease; Provisional 97.5
TIGR02711549 symport_actP cation/acetate symporter ActP. Member 97.47
COG1953497 FUI1 Cytosine/uracil/thiamine/allantoin permeases 97.38
TIGR00796378 livcs branched-chain amino acid uptake carrier. tr 97.3
TIGR02119471 panF sodium/pantothenate symporter. Pantothenate ( 97.29
PRK09395551 actP acetate permease; Provisional 97.27
PF01566358 Nramp: Natural resistance-associated macrophage pr 96.21
PF05525427 Branch_AA_trans: Branched-chain amino acid transpo 96.11
PRK15419502 proline:sodium symporter PutP; Provisional 95.99
PF02133440 Transp_cyt_pur: Permease for cytosine/purines, ura 95.95
COG1914416 MntH Mn2+ and Fe2+ transporters of the NRAMP famil 95.86
PF02554376 CstA: Carbon starvation protein CstA; InterPro: IP 95.78
TIGR03648552 Na_symport_lg probable sodium:solute symporter, VC 95.65
TIGR02121487 Na_Pro_sym sodium/proline symporter. This family c 95.62
KOG1288 945 consensus Amino acid transporters [Amino acid tran 95.61
KOG2082 1075 consensus K+/Cl- cotransporter KCC1 and related tr 95.35
TIGR00796378 livcs branched-chain amino acid uptake carrier. tr 94.61
PF05525427 Branch_AA_trans: Branched-chain amino acid transpo 94.19
PRK15015 701 carbon starvation protein A; Provisional 93.87
TIGR00835425 agcS amino acid carrier protein. Members of the AG 93.85
COG1114431 BrnQ Branched-chain amino acid permeases [Amino ac 93.53
KOG2083 643 consensus Na+/K+ symporter [Inorganic ion transpor 92.63
PRK15433439 branched-chain amino acid transport system 2 carri 91.62
PRK00701439 manganese transport protein MntH; Reviewed 91.41
PRK10484523 putative transporter; Provisional 91.23
COG1966575 CstA Carbon starvation protein, predicted membrane 89.87
COG0733439 Na+-dependent transporters of the SNF family [Gene 89.52
PRK15433439 branched-chain amino acid transport system 2 carri 86.83
COG1114431 BrnQ Branched-chain amino acid permeases [Amino ac 84.7
KOG2349 585 consensus Na+:iodide/myo-inositol/multivitamin sym 83.87
>PTZ00206 amino acid transporter; Provisional Back     alignment and domain information 
Probab=100.00  E-value=8.3e-56  Score=441.74  Aligned_cols=392  Identities=16%  Similarity=0.213  Sum_probs=307.5

Q ss_pred             CcchhhhhhhhhhchHHHHHHhhChhHHHHHHHHHHHHHHHHHHHHHhcccCCCCCCCCCcccHHHHHHHHcCCCceeeh
Q 036402            1 MSHAFTAIVGSGILALPWSVAQLGWILGLMILVAFAAITYYTAILLSDCYRTPDPINGSRNYTYMDAVRALLGPKNVVVC   80 (440)
Q Consensus         1 ~~~l~~~~iG~GiL~lP~~f~~~G~~~gii~li~~~~~~~~s~~~l~~~~~~~~~~~~~~~~~y~~l~~~~~G~~~~~l~   80 (440)
                      ++|++|+++|+|+|++|++|+++||+.|++++++++.++.|+.+++.+++++.+      ..+|+|++++++||++++++
T Consensus        66 ~fnL~~~~iGaGILsLP~Af~~~G~v~giillil~a~ls~ys~~lL~~~~~~~~------~~sY~~la~~~~G~~g~~~v  139 (467)
T PTZ00206         66 AFNIASSTVGAGIVGLPSAANSSGLVMAMIYLIIITAMTIFSIYALGVAADKTN------IRTYEGVARVLLGPWGSYYV  139 (467)
T ss_pred             HHHHHHHHHhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhccCC------CCCHHHHHHHHhCHHHHHHH
Confidence            479999999999999999999999999999999999999999999999876522      23999999999999999999


Q ss_pred             HHHHHHHHHhhHHHHHHHHHHHHHHHHHhhcccCCCCCcccccccchhhHhhhHHHHHhhcCCCCchhhHHHHHHHHHHH
Q 036402           81 GIMQYSLLWGTMIGYTITTAISVANLKRSTCYHKKGENAKCHVSGHLYMLTYGAIETILSQCPNLEKATFLSIIAAVTSL  160 (440)
Q Consensus        81 ~~~~~~~~~g~~i~y~i~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~ii~~~~~~pl~~~~~l~~l~~~s~~~~~~~~  160 (440)
                      ++.+.+.++|+|++|+++++|.++.+++....+..  ......++..+.++..++++|++++|++++++++|.+++.+.+
T Consensus       140 ~~~~~~~~~G~cv~YlIiigd~l~~~l~~~~~~~~--~~~~~~~r~~~~~i~~~i~lPLs~~r~i~~L~~~S~i~~~~i~  217 (467)
T PTZ00206        140 AATRAFHGFSACVAYVISVGDILSATLKGTNAPDF--LKQKSGNRLLTSLMWLCFMLPLVIPRHIDSLRYVSTIAVSFMV  217 (467)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhccCCccch--hhhccCcEEeeeehhhhHhhhcccccchHHHHHHHHHHHHHHH
Confidence            99999999999999999999999998753111000  0000112233444556788999999999999999999987766


Q ss_pred             HHHHHHHHHHHHHhhhcccccccccceeccc----cccchhhhhhHHHHHHHHHHHhccchhHHHHHhhhCCCCccchhh
Q 036402          161 VYSSIALCLSIAKIFSHRKIKGNLMVMKAGV----DVASSKKIWHAFQALGNIAFAYTYSMMLLEIQDTLKSPPPENKMM  236 (440)
Q Consensus       161 ~~~~i~v~~~i~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~faf~~~~~~~~i~~~m~~p~~~~~~~  236 (440)
                      +..+.+++.......++     +.++.+.++    +........+.+.++++++|||.||.++|++++|||||++  +|+
T Consensus       218 ~~vi~ivi~~~~~~~~~-----~~~~~~~~~~~~~~~~~f~~~~~~~~algi~~faF~~h~~~~~i~~~M~~~t~--~~~  290 (467)
T PTZ00206        218 YLVIVIVVHSCMNGLPE-----NIKNVSVGKDDNAEIILFNSGNRAIEGLGVFIFAYVFQITAYEVYMDMTNRSV--GKF  290 (467)
T ss_pred             HHHhhhhhhhhcccCcc-----cccccccCCCCCCceEEecCchHHHhhhhHHHhhhhhhhhhHHHHHhhcccch--hHH
Confidence            43333322222111111     111111110    1111112236889999999999999999999999999844  899


Q ss_pred             hhHHHHHHHHHHHHHHHhhhhcccccCCCCCCccccCC-CCchHHHHHHHHHHHHHHHHhhhhcccchHHHHHHHHhhcC
Q 036402          237 KKVSLYAIGATALFYISLGCMGYAAYGTEAPGNILTGF-YNVLWLVDIANIAVIIHLIGAYQVFAQPIFAMHEKWLESRW  315 (440)
Q Consensus       237 ~~~~~~a~~~~~~~Y~~~g~~gy~~fg~~~~~~il~~~-~~~~~~~~~~~~~~~~~~~~s~pl~~~p~~~~~~~~~~~~~  315 (440)
                      .+++..++.+++++|..+|+.||+.||+++++++++|+ |.++....+++++..+.++.+||++.+|+|+.+++.+..  
T Consensus       291 ~~v~~~s~~i~~~lY~~~G~~GYl~fG~~v~~~Illn~~p~~~~~~~v~~~~~~~~v~~sypL~~~p~r~~i~~~~~~--  368 (467)
T PTZ00206        291 VLASTIAMGMCFTMYVLTAFFGYMDFGRNVTGSVLLMYDPVNEPAIMVGFVGVLVKLFVSYALLGMACRNALYDVIGW--  368 (467)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhhhccccccchHHHHhCCCCCCchhhHHHHHHHHHHHHhhhhhhhhHHHHHHHHhCC--
Confidence            99999999999999999999999999999999999999 456777888999999999999999999999999987632  


Q ss_pred             CCCCCCccccccccccccccchhhhHHHHHHHHHHHHHHHHHHhhccchHHHHHHHhhhhcchhhhhhhhHHHHHHh---
Q 036402          316 PTSSFNNIYTIRFPLIIKNFTVRFTLARLLLRTAFVIFTTGVAMMFPFFNAILGLLGSISFWPLTVHLPLRMYIEQA---  392 (440)
Q Consensus       316 ~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~ia~~vp~~~~i~~l~Ga~~~~~l~~ilP~l~~l~~~---  392 (440)
                      +.++        .+          .+++...+..+++.+.++|+++|+++.+++++||++++.++|++|+++|++..   
T Consensus       369 ~~~~--------~~----------~~~~~~~~~~l~~~~l~iAi~vP~l~~vl~lvGa~~~~~l~fi~P~lf~l~~~~~~  430 (467)
T PTZ00206        369 DARK--------VA----------FWKHCIAVVTLSVVMLLCGLFIPKINTVLGFAGSISGGLLGFILPALLFMYSGGFT  430 (467)
T ss_pred             Cccc--------Cc----------hhhHHHHHHHHHHHHHHHHhccCCHHHhhhhhhHHHHHHHHHHHHHHHHHhcCCcc
Confidence            2211        11          14455556666777889999999999999999999999999999999999842   


Q ss_pred             ccccchHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Q 036402          393 KIKRGSLKWFMLQILGLICLVVTLVSAIGSIADIS  427 (440)
Q Consensus       393 ~~~~~~~~~~~~~~~~~~~~~~~v~g~~~si~~ii  427 (440)
                      .++.++.+|...+.++++|++.+++||+.|+++.+
T Consensus       431 ~~~~~~~~~~~~~~lli~Gv~~~v~Gt~~si~~~~  465 (467)
T PTZ00206        431 WQKVGPFYYISTYVVLITGVIAIVFGTGATIWGVT  465 (467)
T ss_pred             HHhhchHHHHHHHHHHHHHhheEEecchhHhhHHh
Confidence            22223344555678888999999999999999876

>KOG1303 consensus Amino acid transporters [Amino acid transport and metabolism] Back     alignment and domain information
>KOG1304 consensus Amino acid transporters [Amino acid transport and metabolism] Back     alignment and domain information
>PF01490 Aa_trans: Transmembrane amino acid transporter protein; InterPro: IPR013057 This transmembrane region is found in many amino acid transporters including P34579 from SWISSPROT (UNC-47) and P40501 from SWISSPROT (MTR) Back     alignment and domain information
>PLN03074 auxin influx permease; Provisional Back     alignment and domain information
>KOG1305 consensus Amino acid transporter protein [Amino acid transport and metabolism] Back     alignment and domain information
>KOG4303 consensus Vesicular inhibitory amino acid transporter [Amino acid transport and metabolism; Signal transduction mechanisms] Back     alignment and domain information
>COG0814 SdaC Amino acid permeases [Amino acid transport and metabolism] Back     alignment and domain information
>PRK10483 tryptophan permease; Provisional Back     alignment and domain information
>PRK15132 tyrosine transporter TyrP; Provisional Back     alignment and domain information
>PRK09664 tryptophan permease TnaB; Provisional Back     alignment and domain information
>PF03222 Trp_Tyr_perm: Tryptophan/tyrosine permease family; InterPro: IPR018227 Amino acid permeases are integral membrane proteins involved in the transport of amino acids into the cell Back     alignment and domain information
>TIGR00837 araaP aromatic amino acid transport protein Back     alignment and domain information
>PRK13629 threonine/serine transporter TdcC; Provisional Back     alignment and domain information
>TIGR00814 stp serine transporter Back     alignment and domain information
>PRK10655 potE putrescine transporter; Provisional Back     alignment and domain information
>TIGR03810 arg_ornith_anti arginine/ornithine antiporter Back     alignment and domain information
>PRK10435 cadB lysine/cadaverine antiporter; Provisional Back     alignment and domain information
>PRK11021 putative transporter; Provisional Back     alignment and domain information
>TIGR01773 GABAperm gamma-aminobutyrate permease Back     alignment and domain information
>TIGR00905 2A0302 transporter, basic amino acid/polyamine antiporter (APA) family Back     alignment and domain information
>PRK10644 arginine:agmatin antiporter; Provisional Back     alignment and domain information
>PRK10197 gamma-aminobutyrate transporter; Provisional Back     alignment and domain information
>PRK10238 aromatic amino acid transporter; Provisional Back     alignment and domain information
>TIGR00909 2A0306 amino acid transporter Back     alignment and domain information
>PRK10249 phenylalanine transporter; Provisional Back     alignment and domain information
>PRK15049 L-asparagine permease; Provisional Back     alignment and domain information
>PRK10746 putative transport protein YifK; Provisional Back     alignment and domain information
>TIGR00913 2A0310 amino acid permease (yeast) Back     alignment and domain information
>TIGR00908 2A0305 ethanolamine permease Back     alignment and domain information
>PRK11049 D-alanine/D-serine/glycine permease; Provisional Back     alignment and domain information
>PRK10580 proY putative proline-specific permease; Provisional Back     alignment and domain information
>PRK11387 S-methylmethionine transporter; Provisional Back     alignment and domain information
>PF13520 AA_permease_2: Amino acid permease; PDB: 3NCY_A 3GI8_C 3GIA_A 3GI9_C 3OB6_A 3L1L_A 3LRC_D 3LRB_B 4DJK_A 4DJI_A Back     alignment and domain information
>PRK10836 lysine transporter; Provisional Back     alignment and domain information
>TIGR00912 2A0309 spore germination protein (amino acid permease) Back     alignment and domain information
>KOG1287 consensus Amino acid transporters [Amino acid transport and metabolism] Back     alignment and domain information
>TIGR00930 2a30 K-Cl cotransporter Back     alignment and domain information
>PRK11357 frlA putative fructoselysine transporter; Provisional Back     alignment and domain information
>COG1113 AnsP Gamma-aminobutyrate permease and related permeases [Amino acid transport and metabolism] Back     alignment and domain information
>TIGR00906 2A0303 cationic amino acid transport permease Back     alignment and domain information
>TIGR00911 2A0308 L-type amino acid transporter Back     alignment and domain information
>TIGR03813 put_Glu_GABA_T putative glutamate/gamma-aminobutyrate antiporter Back     alignment and domain information
>PRK15238 inner membrane transporter YjeM; Provisional Back     alignment and domain information
>COG0531 PotE Amino acid transporters [Amino acid transport and metabolism] Back     alignment and domain information
>TIGR00907 2A0304 amino acid permease (GABA permease) Back     alignment and domain information
>TIGR00910 2A0307_GadC glutamate:gamma-aminobutyrate antiporter Back     alignment and domain information
>TIGR03428 ureacarb_perm permease, urea carboxylase system Back     alignment and domain information
>PF03845 Spore_permease: Spore germination protein; InterPro: IPR004761 Amino acid permeases are integral membrane proteins involved in the transport of amino acids into the cell Back     alignment and domain information
>KOG3832 consensus Predicted amino acid transporter [General function prediction only] Back     alignment and domain information
>PF00324 AA_permease: Amino acid permease; InterPro: IPR004841 Amino acid permeases are integral membrane proteins involved in the transport of amino acids into the cell Back     alignment and domain information
>KOG1286 consensus Amino acid transporters [Amino acid transport and metabolism] Back     alignment and domain information
>COG0833 LysP Amino acid transporters [Amino acid transport and metabolism] Back     alignment and domain information
>COG3949 Uncharacterized membrane protein [Function unknown] Back     alignment and domain information
>KOG1289 consensus Amino acid transporters [Amino acid transport and metabolism] Back     alignment and domain information
>PRK11375 allantoin permease; Provisional Back     alignment and domain information
>TIGR00800 ncs1 NCS1 nucleoside transporter family Back     alignment and domain information
>TIGR02358 thia_cytX probable hydroxymethylpyrimidine transporter CytX Back     alignment and domain information
>PRK12488 acetate permease; Provisional Back     alignment and domain information
>PF00474 SSF: Sodium:solute symporter family; InterPro: IPR001734 Sodium/substrate symport (or co-transport) is a widespread mechanism of solute transport across cytoplasmic membranes of pro- and eukaryotic cells Back     alignment and domain information
>COG0591 PutP Na+/proline symporter [Amino acid transport and metabolism / General function prediction only] Back     alignment and domain information
>PRK09442 panF sodium/panthothenate symporter; Provisional Back     alignment and domain information
>TIGR00813 sss transporter, SSS family Back     alignment and domain information
>COG1457 CodB Purine-cytosine permease and related proteins [Nucleotide transport and metabolism] Back     alignment and domain information
>COG4147 DhlC Predicted symporter [General function prediction only] Back     alignment and domain information
>PRK11017 codB cytosine permease; Provisional Back     alignment and domain information
>TIGR02711 symport_actP cation/acetate symporter ActP Back     alignment and domain information
>COG1953 FUI1 Cytosine/uracil/thiamine/allantoin permeases [Nucleotide transport and metabolism / Coenzyme metabolism] Back     alignment and domain information
>TIGR00796 livcs branched-chain amino acid uptake carrier Back     alignment and domain information
>TIGR02119 panF sodium/pantothenate symporter Back     alignment and domain information
>PRK09395 actP acetate permease; Provisional Back     alignment and domain information
>PF01566 Nramp: Natural resistance-associated macrophage protein; InterPro: IPR001046 The natural resistance-associated macrophage protein (NRAMP) family consists of Nramp1, Nramp2, and yeast proteins Smf1 and Smf2 Back     alignment and domain information
>PF05525 Branch_AA_trans: Branched-chain amino acid transport protein; InterPro: IPR004685 Characterised members of the branched chain Amino Acid:Cation Symporter (LIVCS) family transport all three of the branched chain aliphatic amino acids (leucine (L), isoleucine (I) and valine (V)) Back     alignment and domain information
>PRK15419 proline:sodium symporter PutP; Provisional Back     alignment and domain information
>PF02133 Transp_cyt_pur: Permease for cytosine/purines, uracil, thiamine, allantoin; InterPro: IPR001248 The Nucleobase Cation Symporter-1 (NCS1) family consists of bacterial and yeast transporters for nucleobases including purines and pyrimidines Back     alignment and domain information
>COG1914 MntH Mn2+ and Fe2+ transporters of the NRAMP family [Inorganic ion transport and metabolism] Back     alignment and domain information
>PF02554 CstA: Carbon starvation protein CstA; InterPro: IPR003706 Escherichia coli induces the synthesis of at least 30 proteins at the onset of carbon starvation, two-thirds of which are positively regulated by the cyclic AMP (cAMP) and cAMP receptor protein (CRP) complex Back     alignment and domain information
>TIGR03648 Na_symport_lg probable sodium:solute symporter, VC_2705 subfamily Back     alignment and domain information
>TIGR02121 Na_Pro_sym sodium/proline symporter Back     alignment and domain information
>KOG1288 consensus Amino acid transporters [Amino acid transport and metabolism] Back     alignment and domain information
>KOG2082 consensus K+/Cl- cotransporter KCC1 and related transporters [Inorganic ion transport and metabolism] Back     alignment and domain information
>TIGR00796 livcs branched-chain amino acid uptake carrier Back     alignment and domain information
>PF05525 Branch_AA_trans: Branched-chain amino acid transport protein; InterPro: IPR004685 Characterised members of the branched chain Amino Acid:Cation Symporter (LIVCS) family transport all three of the branched chain aliphatic amino acids (leucine (L), isoleucine (I) and valine (V)) Back     alignment and domain information
>PRK15015 carbon starvation protein A; Provisional Back     alignment and domain information
>TIGR00835 agcS amino acid carrier protein Back     alignment and domain information
>COG1114 BrnQ Branched-chain amino acid permeases [Amino acid transport and metabolism] Back     alignment and domain information
>KOG2083 consensus Na+/K+ symporter [Inorganic ion transport and metabolism] Back     alignment and domain information
>PRK15433 branched-chain amino acid transport system 2 carrier protein BrnQ; Provisional Back     alignment and domain information
>PRK00701 manganese transport protein MntH; Reviewed Back     alignment and domain information
>PRK10484 putative transporter; Provisional Back     alignment and domain information
>COG1966 CstA Carbon starvation protein, predicted membrane protein [Signal transduction mechanisms] Back     alignment and domain information
>COG0733 Na+-dependent transporters of the SNF family [General function prediction only] Back     alignment and domain information
>PRK15433 branched-chain amino acid transport system 2 carrier protein BrnQ; Provisional Back     alignment and domain information
>COG1114 BrnQ Branched-chain amino acid permeases [Amino acid transport and metabolism] Back     alignment and domain information
>KOG2349 consensus Na+:iodide/myo-inositol/multivitamin symporters [Inorganic ion transport and metabolism] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query440
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 2e-08
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
 Score = 55.6 bits (133), Expect = 2e-08
 Identities = 76/471 (16%), Positives = 133/471 (28%), Gaps = 136/471 (28%)

Query: 50  YRTPDPI---NGSRNYTYMDAVRAL--LGP-KNVVVCGIMQYSLLWGTMIGY--TITTAI 101
           Y         N SR   Y+   +AL  L P KNV++ G          ++G   T     
Sbjct: 120 YNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDG----------VLGSGKTWVALD 169

Query: 102 SVANLKRSTCYHKKGENAKCHVSGHLYMLTYG---AIETILSQCPNLEKATFLSIIAAVT 158
              + K            +C +   ++ L      + ET+L     L       I    T
Sbjct: 170 VCLSYKV-----------QCKMDFKIFWLNLKNCNSPETVLEMLQKL----LYQIDPNWT 214

Query: 159 SLVYSSIALCLSI-------AKIFSHRKIKGNLMVMKAGVDVASSKKIWHAF----QAL- 206
           S    S  + L I        ++   +  +  L+V+    +V  + K W+AF    + L 
Sbjct: 215 SRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLL---NV-QNAKAWNAFNLSCKILL 270

Query: 207 ----GNIAFA----YTYSMMLLEIQDTLKSP-----------------PPENKMMKKVSL 241
                 +        T  + L     TL                    P E   +   + 
Sbjct: 271 TTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPRE---VLTTNP 327

Query: 242 YAIGATALFYISLGCM--GYAAYGTEAPGNILTGFYNVLWLVDIANIAVIIHLIGAYQVF 299
             +   A            +     +    I+    NVL   +   +         +   
Sbjct: 328 RRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKM---------FDRL 378

Query: 300 AQPIFAMHEK---------WLES-------------------RWPTSSFNNIYTIRFPLI 331
           +  +F              W +                    + P  S  +I +I   L 
Sbjct: 379 S--VFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELK 436

Query: 332 IKNFTVRFTLARLLLRTAFVIFTTGVAMMFPFFNAILGLLGSISFWPLTVHLPLRMYIEQ 391
           +K     + L R ++   + I  T     F   + I   L    +  +  HL     IE 
Sbjct: 437 VKL-ENEYALHRSIV-DHYNIPKT-----FDSDDLIPPYLDQYFYSHIGHHL---KNIEH 486

Query: 392 AKIKRGSLKWFM-LQILGL-ICLVVTLVSAIGSIAD-ISDLLKHAKLLHIQ 439
            +        F+  + L   I    T  +A GSI + +  L  +    +I 
Sbjct: 487 PERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQLKFYKP--YIC 535

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query440
3l1l_A445 Arginine/agmatine antiporter; TCDB 2.A.3.2.5, ADIC 99.62
3gia_A444 Uncharacterized protein MJ0609; membrane protein, 99.47
4djk_A511 Probable glutamate/gamma-aminobutyrate antiporter; 99.28
2jln_A501 MHP1; hydantoin, transporter, membrane protein, nu 98.21
3dh4_A530 Sodium/glucose cotransporter; membrane protein, sy 97.67
2xq2_A 593 Sodium/glucose cotransporter; transport protein, i 96.82
2a65_A519 Leutaa, Na(+):neurotransmitter symporter (SNF fami 87.72
>3l1l_A Arginine/agmatine antiporter; TCDB 2.A.3.2.5, ADIC, Arg-bound, amino-acid transport, cell inner membrane, cell membrane, membrane; HET: ARG BNG; 3.00A {Escherichia coli} PDB: 3h5m_A* 3h6b_A 3lrb_A 3lrc_A 3ob6_A* 3hqk_A 3ncy_A Back     alignment and structure
Probab=99.62  E-value=5.5e-14  Score=139.88  Aligned_cols=351  Identities=12%  Similarity=0.024  Sum_probs=196.6

Q ss_pred             hhhhhhhhhhchHHHHHHhhChhHHHHHHHHHHHHHHHHHHHHHhcccCCCCCCCCCcccHHHHHHHHcCCCceeehHHH
Q 036402            4 AFTAIVGSGILALPWSVAQLGWILGLMILVAFAAITYYTAILLSDCYRTPDPINGSRNYTYMDAVRALLGPKNVVVCGIM   83 (440)
Q Consensus         4 l~~~~iG~GiL~lP~~f~~~G~~~gii~li~~~~~~~~s~~~l~~~~~~~~~~~~~~~~~y~~l~~~~~G~~~~~l~~~~   83 (440)
                      .+++++|+|++.+|...++.|.. +++..++.++........+.|..++. |+.|    +..+..++.+||+.+++....
T Consensus        19 ~ig~~iG~Gif~~~~~~~~~G~~-~~~~~li~~~~~~~~a~~~~el~~~~-p~~G----g~y~~~~~~~G~~~g~~~g~~   92 (445)
T 3l1l_A           19 VSGAIMGSGVFLLPANLASTGGI-AIYGWLVTIIGALGLSMVYAKMSFLD-PSPG----GSYAYARRCFGPFLGYQTNVL   92 (445)
T ss_dssp             HHHHHCSSHHHHHHHHHHHHCTH-HHHHHHHHHHHHHHHHHHHHHHHHHC-CCTT----THHHHHHHHSCHHHHHHHHHH
T ss_pred             HHHhHHhhhHHhhHHHHHHhhhH-HHHHHHHHHHHHHHHHHHHHHHHccC-CCCC----CchhhHHhHcCChHHHHHHHH
Confidence            46789999999999999998864 78888888999999888888865542 3322    566677899999999999888


Q ss_pred             HHHHHHhhHHHHHHHHHHHHHHHHHhhcccCCCCCcccccccchhhHhhhHHHHHhhcCCCCchhhHHHHHHHHHHHHHH
Q 036402           84 QYSLLWGTMIGYTITTAISVANLKRSTCYHKKGENAKCHVSGHLYMLTYGAIETILSQCPNLEKATFLSIIAAVTSLVYS  163 (440)
Q Consensus        84 ~~~~~~g~~i~y~i~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~ii~~~~~~pl~~~~~l~~l~~~s~~~~~~~~~~~  163 (440)
                      ..+........+....++++...++..     +   . .+....+ .+..+++.-....+..+...+++.+.....+...
T Consensus        93 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~---~-~~~~~~~-~~~~~~~~~~in~~g~~~~~~~~~~~~~~~i~~~  162 (445)
T 3l1l_A           93 YWLACWIGNIAMVVIGVGYLSYFFPIL-----K---D-PWVLTIT-CVVVLWIFVLLNIVGPKMITRVQAVATVLALIPI  162 (445)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTTTTCGGG-----G---S-HHHHHHH-HHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHCccc-----c---c-cHHHHHH-HHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHH
Confidence            888877777777777777665443210     0   0 1111111 1111122222233455555555554444333221


Q ss_pred             HHHHHHHHHHhhhcccccccccceeccccccchhhhhhHHHHHHHHHHHhccchhHHHHHhhhCCCCccchhhhhHHHHH
Q 036402          164 SIALCLSIAKIFSHRKIKGNLMVMKAGVDVASSKKIWHAFQALGNIAFAYTYSMMLLEIQDTLKSPPPENKMMKKVSLYA  243 (440)
Q Consensus       164 ~i~v~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~faf~~~~~~~~i~~~m~~p~~~~~~~~~~~~~a  243 (440)
                      ++   ..+......++ + +.. ..+.  ........++..++....|+|.+........+|+|||+   |+.+|.+..+
T Consensus       163 ~~---~~i~~~~~~~~-~-~~~-~~~~--~~~~~~~~~~~~~~~~~~~af~G~e~~~~~~~e~k~p~---r~ip~a~~~~  231 (445)
T 3l1l_A          163 VG---IAVFGWFWFRG-E-TYM-AAWN--VSGLGTFGAIQSTLNVTLWSFIGVESASVAAGVVKNPK---RNVPIATIGG  231 (445)
T ss_dssp             HH---HHHTTSTTCCC-C-CCC-CC-------------HHHHHHHHHHTTTTTTHHHHGGGGBSSHH---HHHHHHHHHH
T ss_pred             HH---HHHHHHHHhCh-h-hcc-cccC--ccCCccHHHHHHHHHHHHHHHHhHHHHHHHHHHhcCcc---ccccHHHHHH
Confidence            11   11111111111 0 110 0111  11112344688899999999999999999999999983   7899999999


Q ss_pred             HHHHHHHHHHhhhhcccccCCCCCCc----ccc---CCCCchHHHHHHHHHHHHHHHHhhhhcccchHHHHHHHHhhcCC
Q 036402          244 IGATALFYISLGCMGYAAYGTEAPGN----ILT---GFYNVLWLVDIANIAVIIHLIGAYQVFAQPIFAMHEKWLESRWP  316 (440)
Q Consensus       244 ~~~~~~~Y~~~g~~gy~~fg~~~~~~----il~---~~~~~~~~~~~~~~~~~~~~~~s~pl~~~p~~~~~~~~~~~~~~  316 (440)
                      .....++|...........+.+...+    ..+   +. ..++...+..+...+..+.+.--......+.+...-.++.-
T Consensus       232 ~~~~~~~y~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~sR~~~~~a~dg~l  310 (445)
T 3l1l_A          232 VLIAAVCYVLSTTAIMGMIPNAALRVSASPFGDAARMA-LGDTAGAIVSFCAAAGCLGSLGGWTLLAGQTAKAAADDGLF  310 (445)
T ss_dssp             HHHHHHHHHHHHHHHHHHSCTTTSCSTTCTHHHHHHHH-HCTTHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHTTSS
T ss_pred             HHHHHHHHHHHHHHHHhcCCHHHHhccCcHHHHHHHHH-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCC
Confidence            99999999988877666655432111    100   11 01233445555555666555555444455555444332211


Q ss_pred             CCCCCccccccccccccccchhhhHHHHHHHHHHHHHHHHHHhhcc----chHHHHHHHhhhhcchhhhhhhhHHHHHHh
Q 036402          317 TSSFNNIYTIRFPLIIKNFTVRFTLARLLLRTAFVIFTTGVAMMFP----FFNAILGLLGSISFWPLTVHLPLRMYIEQA  392 (440)
Q Consensus       317 ~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~ia~~vp----~~~~i~~l~Ga~~~~~l~~ilP~l~~l~~~  392 (440)
                      .+.+.+.+..+.|           ..-......+ .....+....|    .++.+.++.+  .+..+.|.++.+.+++.|
T Consensus       311 P~~~~~~~~~~~P-----------~~a~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~~~~--~~~~~~y~~~~~~~~~~r  376 (445)
T 3l1l_A          311 PPIFARVNKAGTP-----------VAGLIIVGIL-MTIFQLSSISPNATKEFGLVSSVSV--IFTLVPYLYTCAALLLLG  376 (445)
T ss_dssp             CGGGGCCCTTCCC-----------HHHHHHHHHH-HHHHHHSTTSHHHHCCCHHHHHHHH--HHHHHHHHHHHHHHHHHH
T ss_pred             cHHHHhcCCCCCC-----------HHHHHHHHHH-HHHHHHHHHcccHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHh
Confidence            1122221212233           1222222111 11111111223    3566666544  344788999999999887


Q ss_pred             cccc
Q 036402          393 KIKR  396 (440)
Q Consensus       393 ~~~~  396 (440)
                      ++++
T Consensus       377 ~~~~  380 (445)
T 3l1l_A          377 HGHF  380 (445)
T ss_dssp             SSSS
T ss_pred             hcCc
Confidence            6544
>3gia_A Uncharacterized protein MJ0609; membrane protein, transporter, cell membrane, membrane, transmembrane, transport protein; HET: D10 BCN; 2.32A {Methanocaldococcus jannaschii} PDB: 3gi9_C* 3gi8_C Back     alignment and structure
>4djk_A Probable glutamate/gamma-aminobutyrate antiporter; LEUT, glutamate-GABA antiporter, transport protein; 3.10A {Escherichia coli} PDB: 4dji_A Back     alignment and structure
>2jln_A MHP1; hydantoin, transporter, membrane protein, nucleobase-cation-symport-1 family; 2.85A {Microbacterium liquefaciens} PDB: 2jlo_A* 2x79_A Back     alignment and structure
>3dh4_A Sodium/glucose cotransporter; membrane protein, symporter, sugar transport, SGLT, ION TRAN membrane, sodium transport, symport; HET: GAL; 2.70A {Vibrio parahaemolyticus} Back     alignment and structure
>2xq2_A Sodium/glucose cotransporter; transport protein, inverted repeats, LEUT-fold, galactose; 2.73A {Vibrio parahaemolyticus} PDB: 2xq2_B 2kpe_A Back     alignment and structure
>2a65_A Leutaa, Na(+):neurotransmitter symporter (SNF family); membrane protein, transport protein; HET: BOG; 1.65A {Aquifex aeolicus} SCOP: f.54.1.1 PDB: 2q6h_A* 2q72_A* 2qb4_A* 2qei_A* 3f3a_A* 3f3c_A* 3f3d_A* 3f3e_A* 3f48_A* 3f4i_A* 3f4j_A* 3usg_A* 3usi_A 3usj_A 3usk_A 3usl_A* 3usm_A* 3uso_A 3usp_A* 3qs5_A* ... Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query440
d2a65a1509 Na(+):neurotransmitter symporter homologue LeuT {A 87.78
>d2a65a1 f.54.1.1 (A:5-513) Na(+):neurotransmitter symporter homologue LeuT {Aquifex aeolicus [TaxId: 63363]} Back     information, alignment and structure
class: Membrane and cell surface proteins and peptides
fold: SNF-like
superfamily: SNF-like
family: SNF-like
domain: Na(+):neurotransmitter symporter homologue LeuT
species: Aquifex aeolicus [TaxId: 63363]

Probab=87.78  E-value=10  Score=34.94  Aligned_cols=99  Identities=11%  Similarity=0.023  Sum_probs=51.8

Q ss_pred             hhhhhhhhhhc-hHHHHHHhhChhHHHHHHHHHHHH----HHHHHHHHHhcccCCCCCCCCCcccHHHHHHHHcCCCcee
Q 036402            4 AFTAIVGSGIL-ALPWSVAQLGWILGLMILVAFAAI----TYYTAILLSDCYRTPDPINGSRNYTYMDAVRALLGPKNVV   78 (440)
Q Consensus         4 l~~~~iG~GiL-~lP~~f~~~G~~~gii~li~~~~~----~~~s~~~l~~~~~~~~~~~~~~~~~y~~l~~~~~G~~~~~   78 (440)
                      .+..++|.|-+ =.||-..+-|-..-++..+++.++    ..+-=..+.|-.++. +     ...+..+.....+.+...
T Consensus        14 ~~g~avGlGNiWrFPyl~~~nGGgaFlipY~~~l~l~gvPll~lE~~lGq~~~~g-~-----i~~~~~i~~~~~~~~~~~   87 (509)
T d2a65a1          14 MAGNAVGLGNFLRFPVQAAENGGGAFMIPYIIAFLLVGIPLMWIEWAMGRYGGAQ-G-----HGTTPAIFYLLWRNRFAK   87 (509)
T ss_dssp             HHHHHSSHHHHTHHHHHHHHTTTHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHTT-T-----CCSHHHHHHHHSCSHHHH
T ss_pred             HHHHHhcccHHHhhhHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHHcCCCCCC-c-----ccHHHHHHHHhccCcchh
Confidence            34567777755 489998665533233333222222    222222333332221 1     226776666655444334


Q ss_pred             ehHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Q 036402           79 VCGIMQYSLLWGTMIGYTITTAISVANLKR  108 (440)
Q Consensus        79 l~~~~~~~~~~g~~i~y~i~~~~~l~~i~~  108 (440)
                      .+.....+..+..++-|.+..+-.+..+..
T Consensus        88 giG~~~~~~~~~i~~yy~vi~~w~l~Y~~~  117 (509)
T d2a65a1          88 ILGVFGLWIPLVVAIYYVYIESWTLGFAIK  117 (509)
T ss_dssp             HHHTHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            455556666666777777777776655543