Citrus Sinensis ID: 036411
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 487 | 2.2.26 [Sep-21-2011] | |||||||
| Q9FIZ3 | 1252 | LRR receptor-like serine/ | no | no | 0.958 | 0.373 | 0.336 | 1e-47 | |
| Q9SGP2 | 996 | Receptor-like protein kin | no | no | 0.895 | 0.437 | 0.332 | 6e-46 | |
| Q9FL28 | 1173 | LRR receptor-like serine/ | no | no | 0.924 | 0.383 | 0.309 | 8e-45 | |
| Q8VZG8 | 1045 | Probable LRR receptor-lik | no | no | 0.977 | 0.455 | 0.330 | 8e-45 | |
| C0LGQ5 | 1249 | LRR receptor-like serine/ | no | no | 0.938 | 0.365 | 0.303 | 5e-44 | |
| Q9LVP0 | 1102 | Probable leucine-rich rep | no | no | 0.950 | 0.420 | 0.326 | 1e-43 | |
| Q9SSL9 | 1123 | Leucine-rich repeat recep | no | no | 0.979 | 0.424 | 0.319 | 1e-42 | |
| C0LGT6 | 1031 | LRR receptor-like serine/ | no | no | 0.965 | 0.455 | 0.305 | 3e-42 | |
| Q9LRT1 | 1016 | Probably inactive leucine | no | no | 0.839 | 0.402 | 0.354 | 4e-42 | |
| Q9FL51 | 872 | Probably inactive leucine | no | no | 0.870 | 0.486 | 0.318 | 2e-41 |
| >sp|Q9FIZ3|GSO2_ARATH LRR receptor-like serine/threonine-protein kinase GSO2 OS=Arabidopsis thaliana GN=GSO2 PE=2 SV=2 | Back alignment and function desciption |
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Score = 191 bits (485), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 164/488 (33%), Positives = 255/488 (52%), Gaps = 21/488 (4%)
Query: 7 LKQLKILNLGFNFFIDSILPYLNTLTSLTTLNLRYNKIEGSRTKQGICNLKNLLELDLSS 66
LK L+ LNLG N F I L L S+ LNL N+++G K+ + L NL LDLSS
Sbjct: 239 LKNLQTLNLGDNSFSGEIPSQLGDLVSIQYLNLIGNQLQGLIPKR-LTELANLQTLDLSS 297
Query: 67 NNFEGHLPQCLNNLTHLKVLDISYNQLSGNFP-SVLTNLTSLEYLDLSFIDFQGTFLINS 125
NN G + + + L+ L ++ N+LSG+ P ++ +N TSL+ L LS G +
Sbjct: 298 NNLTGVIHEEFWRMNQLEFLVLAKNRLSGSLPKTICSNNTSLKQLFLSETQLSGE-IPAE 356
Query: 126 LANHSKLEVLVLSSGNDMLQVKTENWLPTYPLKVLQLSHCHLNVNS------SFLLHQHH 179
++N L++L LS+ Q+ P ++++L++ +LN NS S + + +
Sbjct: 357 ISNCQSLKLLDLSNNTLTGQI------PDSLFQLVELTNLYLNNNSLEGTLSSSISNLTN 410
Query: 180 LKFLDLSHNQLVGNFPTWLLQNNTGLEVLILWNNSFSGILPRLPNAKYDKLRHLDISTNN 239
L+ L HN L G P + LE++ L+ N FSG +P + +L+ +D N
Sbjct: 411 LQEFTLYHNNLEGKVPKEIGFLGK-LEIMYLYENRFSGEMP-VEIGNCTRLQEIDWYGNR 468
Query: 240 FSGKLPENLGIVFQKLIYLDVSKNSFEGNIPYSISEMKELITLDLSRNNFSGELPRSIFS 299
SG++P ++G + L L + +N GNIP S+ ++ +DL+ N SG +P S F
Sbjct: 469 LSGEIPSSIG-RLKDLTRLHLRENELVGNIPASLGNCHQMTVIDLADNQLSGSIPSS-FG 526
Query: 300 SCLSLETLDLSNNNFYGQLFPNFMNLTHLSSLRLNNNHFSGKMADGLLSSTLLDVLDVSN 359
+LE + NN+ G L + +NL +L+ + ++N F+G ++ SS+ L DV+
Sbjct: 527 FLTALELFMIYNNSLQGNLPDSLINLKNLTRINFSSNKFNGSISPLCGSSSYLS-FDVTE 585
Query: 360 NKLSGDIPHWIGNFSVLWLLLMSENYLQGSIPVQLGNLESLEFIDISENGLS-VSMVSLS 418
N GDIP +G + L L + +N G IP G + L +DIS N LS + V L
Sbjct: 586 NGFEGDIPLELGKSTNLDRLRLGKNQFTGRIPRTFGKISELSLLDISRNSLSGIIPVELG 645
Query: 419 NLSSVKHIYLHNNAINGLIPIALLRSSTLLTLDLRDNKFFGRIPHQINELSNLHFLLLRG 478
+ HI L+NN ++G+IP L + L L L NKF G +P +I L+N+ L L G
Sbjct: 646 LCKKLTHIDLNNNYLSGVIPTWLGKLPLLGELKLSSNKFVGSLPTEIFSLTNILTLFLDG 705
Query: 479 NSLQGRIP 486
NSL G IP
Sbjct: 706 NSLNGSIP 713
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Together with GSO1, receptor-like serine/threonine-kinase required during the development of the epidermal surface in embryos and cotyledons. Involved in the nuclear division phase of megagametogenesis. Arabidopsis thaliana (taxid: 3702) EC: 2EC: .EC: 7EC: .EC: 1EC: 1EC: .EC: 1 |
| >sp|Q9SGP2|HSL1_ARATH Receptor-like protein kinase HSL1 OS=Arabidopsis thaliana GN=HSL1 PE=2 SV=1 | Back alignment and function description |
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Score = 185 bits (470), Expect = 6e-46, Method: Compositional matrix adjust.
Identities = 166/500 (33%), Positives = 249/500 (49%), Gaps = 64/500 (12%)
Query: 17 FNFFIDSILPY-LNTLTSLTTLNLRYNKIEGSRTKQGICNLKNLLELDLSSNNFEGHLPQ 75
+N I+S LP + SL TL+L N + G Q + ++ L+ LDL+ NNF G +P
Sbjct: 92 YNNSINSTLPLNIAACKSLQTLDLSQNLLTG-ELPQTLADIPTLVHLDLTGNNFSGDIPA 150
Query: 76 CLNNLTHLKVLDISYNQLSGNFPSVLTNLTSLEYLDLSFIDFQGTFLINSLANHSKLEVL 135
+L+VL + YN L G P L N+++L+ L+LS+ F + + N + LEV+
Sbjct: 151 SFGKFENLEVLSLVYNLLDGTIPPFLGNISTLKMLNLSYNPFSPSRIPPEFGNLTNLEVM 210
Query: 136 VLSSGNDMLQVKTENWLPTYPLKVLQLSHCHLNVNSSFLLHQ-HHLKFLDLSHNQLVGNF 194
W L+ CHL L Q L LDL+ N LVG+
Sbjct: 211 ---------------W----------LTECHLVGQIPDSLGQLSKLVDLDLALNDLVGHI 245
Query: 195 PTWL--LQNNTGLEVLILWNNSFSG-ILPRLPNAKYDKLRHLDISTNNFSGKLPENLGIV 251
P L L N +E L+NNS +G I P L N K LR LD S N +GK+P+ L V
Sbjct: 246 PPSLGGLTNVVQIE---LYNNSLTGEIPPELGNLK--SLRLLDASMNQLTGKIPDELCRV 300
Query: 252 FQKLIYLDVSKNSFEGNIPYSIS------EMK------------------ELITLDLSRN 287
L L++ +N+ EG +P SI+ E++ L LD+S N
Sbjct: 301 --PLESLNLYENNLEGELPASIALSPNLYEIRIFGNRLTGGLPKDLGLNSPLRWLDVSEN 358
Query: 288 NFSGELPRSIFSSCLSLETLDLSNNNFYGQLFPNFMNLTHLSSLRLNNNHFSGKMADGLL 347
FSG+LP + + LE L + +N+F G + + + L+ +RL N FSG + G
Sbjct: 359 EFSGDLPADLCAKG-ELEELLIIHNSFSGVIPESLADCRSLTRIRLAYNRFSGSVPTGFW 417
Query: 348 SSTLLDVLDVSNNKLSGDIPHWIGNFSVLWLLLMSENYLQGSIPVQLGNLESLEFIDISE 407
+++L++ NN SG+I IG S L LL++S N GS+P ++G+L++L + S
Sbjct: 418 GLPHVNLLELVNNSFSGEISKSIGGASNLSLLILSNNEFTGSLPEEIGSLDNLNQLSASG 477
Query: 408 NGLSVSMV-SLSNLSSVKHIYLHNNAINGLIPIALLRSSTLLTLDLRDNKFFGRIPHQIN 466
N S S+ SL +L + + LH N +G + + L L+L DN+F G+IP +I
Sbjct: 478 NKFSGSLPDSLMSLGELGTLDLHGNQFSGELTSGIKSWKKLNELNLADNEFTGKIPDEIG 537
Query: 467 ELSNLHFLLLRGNSLQGRIP 486
LS L++L L GN G+IP
Sbjct: 538 SLSVLNYLDLSGNMFSGKIP 557
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Arabidopsis thaliana (taxid: 3702) EC: 2 EC: . EC: 7 EC: . EC: 1 EC: 1 EC: . EC: 1 |
| >sp|Q9FL28|FLS2_ARATH LRR receptor-like serine/threonine-protein kinase FLS2 OS=Arabidopsis thaliana GN=FLS2 PE=1 SV=1 | Back alignment and function description |
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Score = 181 bits (460), Expect = 8e-45, Method: Compositional matrix adjust.
Identities = 158/510 (30%), Positives = 249/510 (48%), Gaps = 60/510 (11%)
Query: 4 FGSLKQLKILNLGFNFFIDSILPYLNTLTSLTTLNLRYNKIEGSRTKQGICNLKNLLELD 63
G L +L L L N+F SI + L ++ L+LR N + G ++ IC +L+ +
Sbjct: 116 IGKLTELNQLILYLNYFSGSIPSGIWELKNIFYLDLRNNLLSGDVPEE-ICKTSSLVLIG 174
Query: 64 LSSNNFEGHLPQCLNNLTHLKVLDISYNQLSGNFPSVLTNLTSLEYLDLSFIDFQGTFLI 123
NN G +P+CL +L HL++ + N L+G+ P + L +L LDLS G +
Sbjct: 175 FDYNNLTGKIPECLGDLVHLQMFVAAGNHLTGSIPVSIGTLANLTDLDLSGNQLTGK-IP 233
Query: 124 NSLANHSKLEVLVLSSGNDMLQVKTENWLP-TYPLKVLQLSHCHLNVNSSFLLHQHHLKF 182
N L+ LVL TEN L P ++ N S L+
Sbjct: 234 RDFGNLLNLQSLVL----------TENLLEGDIPAEI---------GNCSSLVQ------ 268
Query: 183 LDLSHNQLVGNFPTWLLQNNTGLEVLILWNNSFSGILPRLPNAKYDKLRHLDISTNNFSG 242
L+L NQL G P L N L+ L ++ N + +P + +L HL +S N+ G
Sbjct: 269 LELYDNQLTGKIPAE-LGNLVQLQALRIYKNKLTSSIPS-SLFRLTQLTHLGLSENHLVG 326
Query: 243 KLPENLGIVFQKLIYLDVSKNSFEGNIPYSISEMKELITLDLSRNNFSGELPR------- 295
+ E +G + + L L + N+F G P SI+ ++ L L + NN SGELP
Sbjct: 327 PISEEIGFL-ESLEVLTLHSNNFTGEFPQSITNLRNLTVLTVGFNNISGELPADLGLLTN 385
Query: 296 ----------------SIFSSCLSLETLDLSNNNFYGQLFPNF--MNLTHLSSLRLNNNH 337
S S+C L+ LDLS+N G++ F MNLT +S + NH
Sbjct: 386 LRNLSAHDNLLTGPIPSSISNCTGLKLLDLSHNQMTGEIPRGFGRMNLTFIS---IGRNH 442
Query: 338 FSGKMADGLLSSTLLDVLDVSNNKLSGDIPHWIGNFSVLWLLLMSENYLQGSIPVQLGNL 397
F+G++ D + + + L+ L V++N L+G + IG L +L +S N L G IP ++GNL
Sbjct: 443 FTGEIPDDIFNCSNLETLSVADNNLTGTLKPLIGKLQKLRILQVSYNSLTGPIPREIGNL 502
Query: 398 ESLEFIDISENGLSVSM-VSLSNLSSVKHIYLHNNAINGLIPIALLRSSTLLTLDLRDNK 456
+ L + + NG + + +SNL+ ++ + +++N + G IP + L LDL +NK
Sbjct: 503 KDLNILYLHSNGFTGRIPREMSNLTLLQGLRMYSNDLEGPIPEEMFDMKLLSVLDLSNNK 562
Query: 457 FFGRIPHQINELSNLHFLLLRGNSLQGRIP 486
F G+IP ++L +L +L L+GN G IP
Sbjct: 563 FSGQIPALFSKLESLTYLSLQGNKFNGSIP 592
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Constitutes the pattern-recognition receptor (PPR) that determines the specific perception of flagellin (flg22), a potent elicitor of the defense response to pathogen-associated molecular patterns (PAMPs). Flagellin-binding to the receptor is the first step to initiate the innate immune MAP kinase signaling cascade (MEKK1, MKK4/MKK5 and MPK3/MPK6), resulting in enhanced resistance against pathogens. Binding to the effector AvrPto1 from Pseudomonas syringae blocks the downstream plant immune response. Arabidopsis thaliana (taxid: 3702) EC: 2 EC: . EC: 7 EC: . EC: 1 EC: 1 EC: . EC: 1 |
| >sp|Q8VZG8|Y4885_ARATH Probable LRR receptor-like serine/threonine-protein kinase At4g08850 OS=Arabidopsis thaliana GN=At4g08850 PE=1 SV=3 | Back alignment and function description |
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Score = 181 bits (460), Expect = 8e-45, Method: Compositional matrix adjust.
Identities = 168/509 (33%), Positives = 254/509 (49%), Gaps = 33/509 (6%)
Query: 4 FGSLKQLKILNLGFNFFIDSILPYLNTLTSLTTLNLRYNKIEGSRTKQGICNLKNLLELD 63
+G +L+ +L N + I P L L++L TL+L NK+ GS + I L + E+
Sbjct: 138 WGRFSKLEYFDLSINQLVGEIPPELGDLSNLDTLHLVENKLNGSIPSE-IGRLTKVTEIA 196
Query: 64 LSSNNFEGHLPQCLNNLTHLKVLDISYNQLSGNFPSVLTNLTSLEYLDL----------- 112
+ N G +P NLT L L + N LSG+ PS + NL +L L L
Sbjct: 197 IYDNLLTGPIPSSFGNLTKLVNLYLFINSLSGSIPSEIGNLPNLRELCLDRNNLTGKIPS 256
Query: 113 SFIDFQGTFLINSLANHSKLEVLVLSSGN----DMLQVKTENWLPTYP-----LKVLQLS 163
SF + + L+N N E+ GN D L + T P +K L +
Sbjct: 257 SFGNLKNVTLLNMFENQLSGEIPP-EIGNMTALDTLSLHTNKLTGPIPSTLGNIKTLAVL 315
Query: 164 HCHLN-VNSSF---LLHQHHLKFLDLSHNQLVGNFPTWLLQNNTGLEVLILWNNSFSGIL 219
H +LN +N S L + L++S N+L G P + T LE L L +N SG +
Sbjct: 316 HLYLNQLNGSIPPELGEMESMIDLEISENKLTGPVPDSFGKL-TALEWLFLRDNQLSGPI 374
Query: 220 PRLPN-AKYDKLRHLDISTNNFSGKLPENLGIVFQKLIYLDVSKNSFEGNIPYSISEMKE 278
P P A +L L + TNNF+G LP+ + KL L + N FEG +P S+ + K
Sbjct: 375 P--PGIANSTELTVLQLDTNNFTGFLPDTI-CRGGKLENLTLDDNHFEGPVPKSLRDCKS 431
Query: 279 LITLDLSRNNFSGELPRSIFSSCLSLETLDLSNNNFYGQLFPNFMNLTHLSSLRLNNNHF 338
LI + N+FSG++ + F +L +DLSNNNF+GQL N+ L + L+NN
Sbjct: 432 LIRVRFKGNSFSGDISEA-FGVYPTLNFIDLSNNNFHGQLSANWEQSQKLVAFILSNNSI 490
Query: 339 SGKMADGLLSSTLLDVLDVSNNKLSGDIPHWIGNFSVLWLLLMSENYLQGSIPVQLGNLE 398
+G + + + T L LD+S+N+++G++P I N + + L ++ N L G IP + L
Sbjct: 491 TGAIPPEIWNMTQLSQLDLSSNRITGELPESISNINRISKLQLNGNRLSGKIPSGIRLLT 550
Query: 399 SLEFIDISENGLSVSMV-SLSNLSSVKHIYLHNNAINGLIPIALLRSSTLLTLDLRDNKF 457
+LE++D+S N S + +L+NL + ++ L N ++ IP L + S L LDL N+
Sbjct: 551 NLEYLDLSSNRFSSEIPPTLNNLPRLYYMNLSRNDLDQTIPEGLTKLSQLQMLDLSYNQL 610
Query: 458 FGRIPHQINELSNLHFLLLRGNSLQGRIP 486
G I Q L NL L L N+L G+IP
Sbjct: 611 DGEISSQFRSLQNLERLDLSHNNLSGQIP 639
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Arabidopsis thaliana (taxid: 3702) EC: 2 EC: . EC: 7 EC: . EC: 1 EC: 1 EC: . EC: 1 |
| >sp|C0LGQ5|GSO1_ARATH LRR receptor-like serine/threonine-protein kinase GSO1 OS=Arabidopsis thaliana GN=GSO1 PE=2 SV=1 | Back alignment and function description |
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Score = 179 bits (453), Expect = 5e-44, Method: Compositional matrix adjust.
Identities = 154/508 (30%), Positives = 245/508 (48%), Gaps = 51/508 (10%)
Query: 2 DSFGSLKQLKILNLGFNFFIDSILPYLNTLTSLTTLNLRYNKIEGSRTKQGICNLKNLLE 61
++ G+L L++L L I L L + +L L+ N +EG + + N +L
Sbjct: 161 ETLGNLVNLQMLALASCRLTGPIPSQLGRLVRVQSLILQDNYLEGPIPAE-LGNCSDLTV 219
Query: 62 LDLSSNNFEGHLPQCLNNLTHLKVLDISYNQLSGNFPSVLTNLTSLEYLDLSFIDFQGTF 121
+ N G +P L L +L++L+++ N L+G PS L ++ L+YL L QG
Sbjct: 220 FTAAENMLNGTIPAELGRLENLEILNLANNSLTGEIPSQLGEMSQLQYLSLMANQLQG-L 278
Query: 122 LINSLANHSKLEVLVLSSGNDMLQVKTENWLPTYPLKVLQLSHCHLNVNSSFLLHQHHLK 181
+ SLA+ L+ L LS+ N ++ E W N S LL
Sbjct: 279 IPKSLADLGNLQTLDLSANNLTGEIPEEFW------------------NMSQLLD----- 315
Query: 182 FLDLSHNQLVGNFPTWLLQNNTGLEVLILWNNSFSGILPRLPNAKYDKLRHLDISTNNFS 241
L L++N L G+ P + NNT LE L+L SG +P + +K L+ LD+S N+ +
Sbjct: 316 -LVLANNHLSGSLPKSICSNNTNLEQLVLSGTQLSGEIP-VELSKCQSLKQLDLSNNSLA 373
Query: 242 GKLPENLGIVFQ-----------------------KLIYLDVSKNSFEGNIPYSISEMKE 278
G +PE L + + L +L + N+ EG +P IS +++
Sbjct: 374 GSIPEALFELVELTDLYLHNNTLEGTLSPSISNLTNLQWLVLYHNNLEGKLPKEISALRK 433
Query: 279 LITLDLSRNNFSGELPRSIFSSCLSLETLDLSNNNFYGQLFPNFMNLTHLSSLRLNNNHF 338
L L L N FSGE+P+ I +C SL+ +D+ N+F G++ P+ L L+ L L N
Sbjct: 434 LEVLFLYENRFSGEIPQEI-GNCTSLKMIDMFGNHFEGEIPPSIGRLKELNLLHLRQNEL 492
Query: 339 SGKMADGLLSSTLLDVLDVSNNKLSGDIPHWIGNFSVLWLLLMSENYLQGSIPVQLGNLE 398
G + L + L++LD+++N+LSG IP G L L++ N LQG++P L +L
Sbjct: 493 VGGLPASLGNCHQLNILDLADNQLSGSIPSSFGFLKGLEQLMLYNNSLQGNLPDSLISLR 552
Query: 399 SLEFIDISENGLSVSMVSLSNLSSVKHIYLHNNAINGLIPIALLRSSTLLTLDLRDNKFF 458
+L I++S N L+ ++ L SS + NN IP+ L S L L L N+
Sbjct: 553 NLTRINLSHNRLNGTIHPLCGSSSYLSFDVTNNGFEDEIPLELGNSQNLDRLRLGKNQLT 612
Query: 459 GRIPHQINELSNLHFLLLRGNSLQGRIP 486
G+IP + ++ L L + N+L G IP
Sbjct: 613 GKIPWTLGKIRELSLLDMSSNALTGTIP 640
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Together with GSO2, receptor-like serine/threonine-kinase required during the development of the epidermal surface in embryos and cotyledons. Arabidopsis thaliana (taxid: 3702) EC: 2 EC: . EC: 7 EC: . EC: 1 EC: 1 EC: . EC: 1 |
| >sp|Q9LVP0|Y5639_ARATH Probable leucine-rich repeat receptor-like protein kinase At5g63930 OS=Arabidopsis thaliana GN=At5g63930 PE=1 SV=1 | Back alignment and function description |
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Score = 178 bits (451), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 164/503 (32%), Positives = 250/503 (49%), Gaps = 40/503 (7%)
Query: 3 SFGSLKQLKILNLGFNFFIDSILPYLNTLTSLTTLNLRYNKIEGSRTKQGICNLKNLLEL 62
S G+LK+L G N S+ + SL L L N++ G K+ I LK L ++
Sbjct: 188 SIGNLKRLTSFRAGQNMISGSLPSEIGGCESLVMLGLAQNQLSGELPKE-IGMLKKLSQV 246
Query: 63 DLSSNNFEGHLPQCLNNLTHLKVLDISYNQLSGNFPSVLTNLTSLEYLDLSFIDFQGT-- 120
L N F G +P+ ++N T L+ L + NQL G P L +L SLE+L L GT
Sbjct: 247 ILWENEFSGFIPREISNCTSLETLALYKNQLVGPIPKELGDLQSLEFLYLYRNGLNGTIP 306
Query: 121 -------------FLINSLANHSKLEVLVLSSGNDMLQVKTENWLPTYPLKVLQLSHCHL 167
F N+L LE+ + G ++L + T P+++ L
Sbjct: 307 REIGNLSYAIEIDFSENALTGEIPLELGNIE-GLELLYLFENQLTGTIPVELSTL----- 360
Query: 168 NVNSSFLLHQHHLKFLDLSHNQLVGNFPTWLLQNNTGLEVLILWNNSFSGILPRLPN-AK 226
+L LDLS N L G P Q GL +L L+ NS SG +P P
Sbjct: 361 ----------KNLSKLDLSINALTGPIPLGF-QYLRGLFMLQLFQNSLSGTIP--PKLGW 407
Query: 227 YDKLRHLDISTNNFSGKLPENLGIVFQKLIYLDVSKNSFEGNIPYSISEMKELITLDLSR 286
Y L LD+S N+ SG++P L + +I L++ N+ GNIP I+ K L+ L L+R
Sbjct: 408 YSDLWVLDMSDNHLSGRIPSYL-CLHSNMIILNLGTNNLSGNIPTGITTCKTLVQLRLAR 466
Query: 287 NNFSGELPRSIFSSCLSLETLDLSNNNFYGQLFPNFMNLTHLSSLRLNNNHFSGKMADGL 346
NN G P ++ +++ ++L N F G + N + L L+L +N F+G++ +
Sbjct: 467 NNLVGRFPSNLCKQ-VNVTAIELGQNRFRGSIPREVGNCSALQRLQLADNGFTGELPREI 525
Query: 347 LSSTLLDVLDVSNNKLSGDIPHWIGNFSVLWLLLMSENYLQGSIPVQLGNLESLEFIDIS 406
+ L L++S+NKL+G++P I N +L L M N G++P ++G+L LE + +S
Sbjct: 526 GMLSQLGTLNISSNKLTGEVPSEIFNCKMLQRLDMCCNNFSGTLPSEVGSLYQLELLKLS 585
Query: 407 ENGLSVSM-VSLSNLSSVKHIYLHNNAINGLIPIALLRSSTL-LTLDLRDNKFFGRIPHQ 464
N LS ++ V+L NLS + + + N NG IP L + L + L+L NK G IP +
Sbjct: 586 NNNLSGTIPVALGNLSRLTELQMGGNLFNGSIPRELGSLTGLQIALNLSYNKLTGEIPPE 645
Query: 465 INELSNLHFLLLRGNSLQGRIPN 487
++ L L FLLL N+L G IP+
Sbjct: 646 LSNLVMLEFLLLNNNNLSGEIPS 668
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Arabidopsis thaliana (taxid: 3702) EC: 2 EC: . EC: 7 EC: . EC: 1 EC: 1 EC: . EC: 1 |
| >sp|Q9SSL9|PEPR1_ARATH Leucine-rich repeat receptor-like protein kinase PEPR1 OS=Arabidopsis thaliana GN=PEPR1 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 174 bits (442), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 171/536 (31%), Positives = 252/536 (47%), Gaps = 59/536 (11%)
Query: 2 DSFGSLKQLKILNLGFNFFIDSILPYLNTLTSLTTLNLRYNKIEGSRTKQGICNLKNLLE 61
D+ SLK+L++L L NF + L + L L L YN + G Q I + K L+E
Sbjct: 141 DTLDSLKRLEVLYLYINFLTGELPESLFRIPKLQVLYLDYNNLTGP-IPQSIGDAKELVE 199
Query: 62 LDLSSNNFEGHLPQCLNNLTHLKVLDISYNQLSGNFPSVLT------------------- 102
L + +N F G++P+ + N + L++L + N+L G+ P L
Sbjct: 200 LSMYANQFSGNIPESIGNSSSLQILYLHRNKLVGSLPESLNLLGNLTTLFVGNNSLQGPV 259
Query: 103 -----NLTSLEYLDLSFIDFQGTFLINSLANHSKLEVLVLSSGNDMLQVKTENWLPTYPL 157
N +L LDLS+ +F+G + +L N S L+ LV+ SGN + + + L
Sbjct: 260 RFGSPNCKNLLTLDLSYNEFEGG-VPPALGNCSSLDALVIVSGNLSGTIPSSLGM-LKNL 317
Query: 158 KVLQLSHCHLNVN-SSFLLHQHHLKFLDLSHNQLVGNFPTWLLQNNTGLEVLILWNNSFS 216
+L LS L+ + + L + L L L+ NQLVG P+ L + LE L L+ N FS
Sbjct: 318 TILNLSENRLSGSIPAELGNCSSLNLLKLNDNQLVGGIPSALGKLRK-LESLELFENRFS 376
Query: 217 GILP---------------------RLPNAKYDKLRHLDIST---NNFSGKLPENLGIVF 252
G +P LP + +++ L I+T N+F G +P LG V
Sbjct: 377 GEIPIEIWKSQSLTQLLVYQNNLTGELP-VEMTEMKKLKIATLFNNSFYGAIPPGLG-VN 434
Query: 253 QKLIYLDVSKNSFEGNIPYSISEMKELITLDLSRNNFSGELPRSIFSSCLSLETLDLSNN 312
L +D N G IP ++ ++L L+L N G +P SI C ++ L N
Sbjct: 435 SSLEEVDFIGNKLTGEIPPNLCHGRKLRILNLGSNLLHGTIPASI-GHCKTIRRFILREN 493
Query: 313 NFYGQLFPNFMNLTHLSSLRLNNNHFSGKMADGLLSSTLLDVLDVSNNKLSGDIPHWIGN 372
N G L P F LS L N+N+F G + L S L +++S N+ +G IP +GN
Sbjct: 494 NLSG-LLPEFSQDHSLSFLDFNSNNFEGPIPGSLGSCKNLSSINLSRNRFTGQIPPQLGN 552
Query: 373 FSVLWLLLMSENYLQGSIPVQLGNLESLEFIDISENGLSVSMVS-LSNLSSVKHIYLHNN 431
L + +S N L+GS+P QL N SLE D+ N L+ S+ S SN + + L N
Sbjct: 553 LQNLGYMNLSRNLLEGSLPAQLSNCVSLERFDVGFNSLNGSVPSNFSNWKGLTTLVLSEN 612
Query: 432 AINGLIPIALLRSSTLLTLDLRDNKFFGRIPHQINELSNLHF-LLLRGNSLQGRIP 486
+G IP L L TL + N F G IP I + +L + L L GN L G IP
Sbjct: 613 RFSGGIPQFLPELKKLSTLQIARNAFGGEIPSSIGLIEDLIYDLDLSGNGLTGEIP 668
|
Acts as a receptor for PEP defense peptides. Unlike typical immune receptors, senses an endogenous elicitor that potentiates PAMP-inducible plant responses. Arabidopsis thaliana (taxid: 3702) EC: 2 EC: . EC: 7 EC: . EC: 1 EC: 1 EC: . EC: 1 |
| >sp|C0LGT6|EFR_ARATH LRR receptor-like serine/threonine-protein kinase EFR OS=Arabidopsis thaliana GN=EFR PE=1 SV=1 | Back alignment and function description |
|---|
Score = 173 bits (439), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 160/524 (30%), Positives = 248/524 (47%), Gaps = 54/524 (10%)
Query: 3 SFGSLKQLKILNLGFNFFIDSILPYLNTLTSLTTLNLRYNKIEGSRTKQGICNLKNLLEL 62
S G+L L++LNL N F +I + L L LN+ YN +EG R + N L +
Sbjct: 92 SIGNLSFLRLLNLADNSFGSTIPQKVGRLFRLQYLNMSYNLLEG-RIPSSLSNCSRLSTV 150
Query: 63 DLSSNNFEGHLPQCLNNLTHLKVLDISYNQLSGNFPSVLTNLTSLEYLDLSFIDFQGTFL 122
DLSSN+ +P L +L+ L +LD+S N L+GNFP+ L NLTSL+ LD ++ +G +
Sbjct: 151 DLSSNHLGHGVPSELGSLSKLAILDLSKNNLTGNFPASLGNLTSLQKLDFAYNQMRGE-I 209
Query: 123 INSLANHSKLEVLVLSSGNDMLQVKTENWLPTYPLKVLQLSHCHL----------NVNSS 172
+ +A +L +V Q+ ++ +P + +S N+ +
Sbjct: 210 PDEVA---RLTQMVF------FQIALNSFSGGFPPALYNISSLESLSLADNSFSGNLRAD 260
Query: 173 FLLHQHHLKFLDLSHNQLVGNFPTWLLQNNTGLEVLILWNNSFSGILP----RLPN---- 224
F +L+ L L NQ G P L N + LE + +N SG +P +L N
Sbjct: 261 FGYLLPNLRRLLLGTNQFTGAIPK-TLANISSLERFDISSNYLSGSIPLSFGKLRNLWWL 319
Query: 225 ---------------------AKYDKLRHLDISTNNFSGKLPENLGIVFQKLIYLDVSKN 263
A +L +LD+ N G+LP ++ + L L + +N
Sbjct: 320 GIRNNSLGNNSSSGLEFIGAVANCTQLEYLDVGYNRLGGELPASIANLSTTLTSLFLGQN 379
Query: 264 SFEGNIPYSISEMKELITLDLSRNNFSGELPRSIFSSCLSLETLDLSNNNFYGQLFPNFM 323
G IP+ I + L L L N SGELP S F L+L+ +DL +N G++ F
Sbjct: 380 LISGTIPHDIGNLVSLQELSLETNMLSGELPVS-FGKLLNLQVVDLYSNAISGEIPSYFG 438
Query: 324 NLTHLSSLRLNNNHFSGKMADGLLSSTLLDVLDVSNNKLSGDIPHWIGNFSVLWLLLMSE 383
N+T L L LN+N F G++ L L L + N+L+G IP I L + +S
Sbjct: 439 NMTRLQKLHLNSNSFHGRIPQSLGRCRYLLDLWMDTNRLNGTIPQEILQIPSLAYIDLSN 498
Query: 384 NYLQGSIPVQLGNLESLEFIDISENGLSVSMV-SLSNLSSVKHIYLHNNAINGLIPIALL 442
N+L G P ++G LE L + S N LS M ++ S++ +++ N+ +G IP +
Sbjct: 499 NFLTGHFPEEVGKLELLVGLGASYNKLSGKMPQAIGGCLSMEFLFMQGNSFDGAIP-DIS 557
Query: 443 RSSTLLTLDLRDNKFFGRIPHQINELSNLHFLLLRGNSLQGRIP 486
R +L +D +N GRIP + L +L L L N +GR+P
Sbjct: 558 RLVSLKNVDFSNNNLSGRIPRYLASLPSLRNLNLSMNKFEGRVP 601
|
Constitutes the pattern-recognition receptor (PPR) that determines the specific perception of elongation factor Tu (EF-Tu), a potent elicitor of the defense response to pathogen-associated molecular patterns (PAMPs). Reduces transformation by Rhizobium radiobacter probably by inducing plant defense during the interaction. Binding to the effector AvrPto1 from P.syringae blocks the downstream plant immune response. Arabidopsis thaliana (taxid: 3702) EC: 2 EC: . EC: 7 EC: . EC: 1 EC: 1 EC: . EC: 1 |
| >sp|Q9LRT1|Y3804_ARATH Probably inactive leucine-rich repeat receptor-like protein kinase At3g28040 OS=Arabidopsis thaliana GN=At3g28040 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 173 bits (438), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 157/443 (35%), Positives = 221/443 (49%), Gaps = 34/443 (7%)
Query: 48 RTKQGICNLKNLLELDLSSNNFEGHLPQCLNNLTHLKVLDISYNQLSGNFPSVLTNLTSL 107
+ +GI L+ L L LS+NNF G++ L+N HL+ LD+S+N LSG PS L ++TSL
Sbjct: 92 KINRGIQKLQRLKVLSLSNNNFTGNI-NALSNNNHLQKLDLSHNNLSGQIPSSLGSITSL 150
Query: 108 EYLDLSFIDFQGTFLINSLANHSKLEVLVLSSGNDMLQVKTENWLPTYPLKVLQLSHCHL 167
++LDL+ F GT + N S L L LS + Q+ + + + L L LS
Sbjct: 151 QHLDLTGNSFSGTLSDDLFNNCSSLRYLSLSHNHLEGQIPSTLFRCSV-LNSLNLSRNRF 209
Query: 168 NVNSSF---LLHQHHLKFLDLSHNQLVGNFPTWLLQNNTGLEVLILWNNSFSGILPRLPN 224
+ N SF + L+ LDLS N L G+ P +L + L+ L L N FSG LP
Sbjct: 210 SGNPSFVSGIWRLERLRALDLSSNSLSGSIPLGILSLHN-LKELQLQRNQFSGALPS-DI 267
Query: 225 AKYDKLRHLDISTNNFSGKLPENLGIVFQKLIYLDVSKNSFEGNIPYSISEMKELITLDL 284
L +D+S+N+FSG+LP L + L + DVS N G+ P I +M L+ LD
Sbjct: 268 GLCPHLNRVDLSSNHFSGELPRTLQ-KLKSLNHFDVSNNLLSGDFPPWIGDMTGLVHLDF 326
Query: 285 SRNNFSGELPRSIFSSCLSLETLDLSNNNFYGQLFPNFMNLTHLSSLRLNNNHFSGKMAD 344
S N +G+LP SI S+ SL+ L+LS N G++ + + L ++L N FSG + D
Sbjct: 327 SSNELTGKLPSSI-SNLRSLKDLNLSENKLSGEVPESLESCKELMIVQLKGNDFSGNIPD 385
Query: 345 GLLSSTLLDVLDVSNNKLSGDIPHWIGN-FSVLWLLLMSENYLQGSIPVQLGNLESLEFI 403
G L + +D S N L+G IP F L L +S N L GSIP
Sbjct: 386 GFFDLGLQE-MDFSGNGLTGSIPRGSSRLFESLIRLDLSHNSLTGSIP------------ 432
Query: 404 DISENGLSVSMVSLSNLSSVKHIYLHNNAINGLIPIALLRSSTLLTLDLRDNKFFGRIPH 463
E GL + M +++ L N N +P + L LDLR++ G +P
Sbjct: 433 --GEVGLFIHM---------RYLNLSWNHFNTRVPPEIEFLQNLTVLDLRNSALIGSVPA 481
Query: 464 QINELSNLHFLLLRGNSLQGRIP 486
I E +L L L GNSL G IP
Sbjct: 482 DICESQSLQILQLDGNSLTGSIP 504
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9FL51|Y5694_ARATH Probably inactive leucine-rich repeat receptor-like protein kinase At5g06940 OS=Arabidopsis thaliana GN=At5g06940 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 171 bits (432), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 145/455 (31%), Positives = 218/455 (47%), Gaps = 31/455 (6%)
Query: 34 LTTLNLRYNKIEGSRTKQGICNLKNLLELDLSSNNFEGHLPQCLNNLTHLKVLDISYNQL 93
++++NL+ + G IC+L L LDLS N F +P L+ L+ L++S N +
Sbjct: 77 VSSINLQSLNLSG-EISDSICDLPYLTHLDLSLNFFNQPIPLQLSRCVTLETLNLSSNLI 135
Query: 94 SGNFPSVLTNLTSLEYLDLSFIDFQGTFLINSLANHSKLEVLVLSSGNDMLQVKTENWLP 153
G P ++ +SL+ +D S +G + L L+VL L G+++L
Sbjct: 136 WGTIPDQISEFSSLKVIDFSSNHVEG-MIPEDLGLLFNLQVLNL--GSNLLT-------G 185
Query: 154 TYPLKVLQLSHCHLNVNSSFLLHQHHLKFLDLSHNQ-LVGNFPTWLLQNNTGLEVLILWN 212
P + +LS L LDLS N LV P++L + + LE L+L
Sbjct: 186 IVPPAIGKLSE---------------LVVLDLSENSYLVSEIPSFLGKLDK-LEQLLLHR 229
Query: 213 NSFSGILPRLPNAKYDKLRHLDISTNNFSGKLPENLGIVFQKLIYLDVSKNSFEGNIPYS 272
+ F G +P LR LD+S NN SG++P +LG + L+ LDVS+N G+ P
Sbjct: 230 SGFHGEIPT-SFVGLTSLRTLDLSLNNLSGEIPRSLGPSLKNLVSLDVSQNKLSGSFPSG 288
Query: 273 ISEMKELITLDLSRNNFSGELPRSIFSSCLSLETLDLSNNNFYGQLFPNFMNLTHLSSLR 332
I K LI L L N F G LP SI CLSLE L + NN F G+ L + +R
Sbjct: 289 ICSGKRLINLSLHSNFFEGSLPNSI-GECLSLERLQVQNNGFSGEFPVVLWKLPRIKIIR 347
Query: 333 LNNNHFSGKMADGLLSSTLLDVLDVSNNKLSGDIPHWIGNFSVLWLLLMSENYLQGSIPV 392
+NN F+G++ + + ++ L+ +++ NN SG+IPH +G L+ S+N G +P
Sbjct: 348 ADNNRFTGQVPESVSLASALEQVEIVNNSFSGEIPHGLGLVKSLYKFSASQNRFSGELPP 407
Query: 393 QLGNLESLEFIDISENGLSVSMVSLSNLSSVKHIYLHNNAINGLIPIALLRSSTLLTLDL 452
+ L ++IS N L + L N + + L NA G IP +L L LDL
Sbjct: 408 NFCDSPVLSIVNISHNRLLGKIPELKNCKKLVSLSLAGNAFTGEIPPSLADLHVLTYLDL 467
Query: 453 RDNKFFGRIPHQINELSNLHFLLLRGNSLQGRIPN 487
DN G IP + L L + N L G +P+
Sbjct: 468 SDNSLTGLIPQGLQNL-KLALFNVSFNGLSGEVPH 501
|
Arabidopsis thaliana (taxid: 3702) |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 487 | ||||||
| 358345471 | 933 | Receptor kinase [Medicago truncatula] gi | 0.989 | 0.516 | 0.49 | 1e-103 | |
| 359484714 | 862 | PREDICTED: probable LRR receptor-like se | 0.981 | 0.554 | 0.473 | 1e-103 | |
| 255553269 | 2793 | receptor-kinase, putative [Ricinus commu | 0.841 | 0.146 | 0.502 | 1e-100 | |
| 359483099 | 1231 | PREDICTED: probable LRR receptor-like se | 0.983 | 0.389 | 0.468 | 2e-99 | |
| 359482757 | 1027 | PREDICTED: LRR receptor-like serine/thre | 0.948 | 0.449 | 0.458 | 2e-98 | |
| 359476165 | 1464 | PREDICTED: LRR receptor-like serine/thre | 0.975 | 0.324 | 0.467 | 6e-98 | |
| 12324907 | 910 | putative disease resistance protein; 468 | 0.985 | 0.527 | 0.437 | 4e-97 | |
| 359483101 | 747 | PREDICTED: probable LRR receptor-like se | 0.930 | 0.606 | 0.481 | 3e-96 | |
| 359483163 | 1047 | PREDICTED: LRR receptor-like serine/thre | 0.973 | 0.452 | 0.452 | 3e-96 | |
| 359482745 | 1026 | PREDICTED: leucine-rich repeat receptor | 0.987 | 0.468 | 0.437 | 4e-96 |
| >gi|358345471|ref|XP_003636801.1| Receptor kinase [Medicago truncatula] gi|355502736|gb|AES83939.1| Receptor kinase [Medicago truncatula] | Back alignment and taxonomy information |
|---|
Score = 382 bits (980), Expect = e-103, Method: Compositional matrix adjust.
Identities = 245/500 (49%), Positives = 318/500 (63%), Gaps = 18/500 (3%)
Query: 1 YDSFGSLKQLKILNLGFNFFIDSILPYLNTLTSLT-----TLNLRYNKIEGSRTKQGICN 55
+D + ++ IL+ FN+ +S L + + T+L+ LN+ E G+C
Sbjct: 122 FDGWVEIEGNFILDFFFNYH-ESNLVFRDGFTTLSHTTHQPLNVNRRLTENKIILTGLCG 180
Query: 56 LKNLLELDLSSNNFEGHLPQCLNNLTHLKVLDISYNQLSGNFPSVLTNLTSLEYLDLSFI 115
+KNL ELDLS N G+ PQCL NLT L+VLD+S N GN PS + +L SLEYL L
Sbjct: 181 MKNLQELDLSRNGMSGYFPQCLRNLTSLRVLDLSSNNFVGNIPSFIISLKSLEYLSLFDT 240
Query: 116 DFQGTFLINSLANHSKLEVLVLSSGNDMLQVKTE---NWLPTYPLKVLQLSHCHLNVNS- 171
+F G F +SL NHSKLEV +LS + L V+TE +W PT+ LKVLQL +C LN
Sbjct: 241 NFDGIFSFSSLNNHSKLEVFLLSPKTNNLYVETEESPSWHPTFQLKVLQLRNCFLNSKRD 300
Query: 172 ----SFLLHQHHLKFLDLSHNQLVGNFPTWLLQNNTGLEVLILWNNSFSGILPRLPNAKY 227
+FLL+QH L+ LDLSHN+L GNFP+W+L+NNT LE L L NNSF+G L LP K+
Sbjct: 301 GTFPTFLLYQHELQLLDLSHNKLSGNFPSWILENNTKLETLYLMNNSFTGTL-ELPTFKH 359
Query: 228 DKLRHLDISTNNFSGKLPENLGIVFQKLIYLDVSKNSFEGNIPYSISEMKELITLDLSRN 287
L L IS N G+L E++G +F L Y+++SKNSFEG +P SI EM+ + TLDLS N
Sbjct: 360 G-LLDLQISNNKIGGQLQEDIGKIFPNLYYVNLSKNSFEGILPSSIGEMQTIRTLDLSNN 418
Query: 288 NFSGELPRSIFSSCLSLETLDLSNNNFYGQLFPNFMNLTHLSSLRLNNNHFSGKMADGLL 347
NFSGEL + S+ SL L LS+N+F+G L P NLT L+ L LNNN FSG + DG+
Sbjct: 419 NFSGELSSHLISNLTSLRLLRLSHNSFHG-LVPLLSNLTRLNWLYLNNNSFSGVIEDGVS 477
Query: 348 SSTLLDVLDVSNNKLSGDIPHWIGNFSVLWLLLMSENYLQGSIPVQLGNLESLEFIDISE 407
+++ L LD+SNN LSG IP WIG F+ L +L +S+N LQG IP +L NL SL ++D+SE
Sbjct: 478 NNSSLFSLDISNNMLSGRIPRWIGRFTKLSVLSLSKNRLQGEIPNELCNLISLSYLDLSE 537
Query: 408 NGLSVSM-VSLSNLSSVKHIYLHNNAINGLIPIALLRSSTLLTLDLRDNKFFGRIPHQIN 466
N LS + N +K +YL NA+ G IP A + + L +LDLRDN FFG IP IN
Sbjct: 538 NNLSDFLPYCFKNFKYMKFLYLQKNALQGNIPYAFSQLTKLTSLDLRDNNFFGNIPQWIN 597
Query: 467 ELSNLHFLLLRGNSLQGRIP 486
LS L LLL GN L G IP
Sbjct: 598 RLSKLRVLLLAGNKLTGPIP 617
|
Source: Medicago truncatula Species: Medicago truncatula Genus: Medicago Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|359484714|ref|XP_002264041.2| PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At4g36180-like [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 380 bits (976), Expect = e-103, Method: Compositional matrix adjust.
Identities = 231/488 (47%), Positives = 323/488 (66%), Gaps = 10/488 (2%)
Query: 7 LKQLKILNLGFNFFIDSILPYLNTLTSLTTLNLRYNKIEGSRTKQGICNLKNLLELDLSS 66
L +L++LNL +N + I P ++TL+ L +L LRYN + GS + +G+C L NL LDLS
Sbjct: 93 LSRLEVLNLKWNSLMGGIPPIISTLSHLKSLTLRYNNLNGSLSMEGLCKL-NLEALDLSR 151
Query: 67 NNFEGHLPQCLNNLTHLKVLDISYNQLSGNFPSVL-TNLTSLEYLDLSFIDFQGTFLINS 125
N FEG LP CLNNLT L++LD+S N SG PS L +NL SLEY+ LS F+G+ S
Sbjct: 152 NGFEGSLPACLNNLTSLRLLDLSENDFSGTIPSSLFSNLKSLEYISLSDNHFEGSIHFGS 211
Query: 126 LANHSKLEVLVLSSGNDMLQVKTEN--W-LPTYPLKVLQLSHCHLNVNS----SFLLHQH 178
L NHS+L V L+S N L+V+TEN W P + LK+L+LS+C LN S SFL Q+
Sbjct: 212 LFNHSRLVVFDLASNNKYLKVETENPIWSFPLFQLKILRLSNCTLNWPSWVLPSFLPSQY 271
Query: 179 HLKFLDLSHNQLVGNFPTWLLQNNTGLEVLILWNNSFSGILPRLPNAKYDKLRHLDISTN 238
L+ +DLSHN + G+ PTWLL NNT LE L +NS +G+L N+K+ + LD S+N
Sbjct: 272 DLRMVDLSHNNITGDIPTWLLDNNTKLEYLSFGSNSLTGVLDLPSNSKHSHMLLLDFSSN 331
Query: 239 NFSGKLPENLGIVFQKLIYLDVSKNSFEGNIPYSISEMKELITLDLSRNNFSGELPRSIF 298
G+LP +G +F L L++S+N+ +GNIP S+ +M++L++LDLS NN SG+LP +
Sbjct: 332 CIHGELPPFIGSIFPGLEVLNLSRNALQGNIPSSMGDMEQLVSLDLSNNNLSGQLPEHMM 391
Query: 299 SSCLSLETLDLSNNNFYGQLFPNFMNLTHLSSLRLNNNHFSGKMADGLLSSTLLDVLDVS 358
C+SL L LSNN+ +G L P NLT L L L+NN+FSG+++ G L+S+ L LD+S
Sbjct: 392 MGCISLLVLKLSNNSLHGTL-PTKSNLTDLFFLSLDNNNFSGEISRGFLNSSSLQALDIS 450
Query: 359 NNKLSGDIPHWIGNFSVLWLLLMSENYLQGSIPVQLGNLESLEFIDISENGLSVSMVSLS 418
+N L G IP+WIG+FSVL L +S N+L G +P L L L F+D+S N + ++ +
Sbjct: 451 SNSLWGQIPNWIGDFSVLSTLSLSRNHLDGVVPTSLCKLNELRFLDLSHNKIGPTLPPCA 510
Query: 419 NLSSVKHIYLHNNAINGLIPIALLRSSTLLTLDLRDNKFFGRIPHQINELSNLHFLLLRG 478
NL +K ++L NN ++G IP L +++L+TL+LRDNK G IPH I+ LS L LLL+G
Sbjct: 511 NLKKMKFLHLENNELSGPIPHVLSEATSLVTLNLRDNKLSGPIPHWISLLSKLRVLLLKG 570
Query: 479 NSLQGRIP 486
N L+ IP
Sbjct: 571 NELEDSIP 578
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255553269|ref|XP_002517677.1| receptor-kinase, putative [Ricinus communis] gi|223543309|gb|EEF44841.1| receptor-kinase, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 373 bits (957), Expect = e-100, Method: Compositional matrix adjust.
Identities = 222/442 (50%), Positives = 304/442 (68%), Gaps = 32/442 (7%)
Query: 52 GICNLKNLLELDLSSNNFEGHLPQCLNNLTHLKVLDISYNQLSGNFPSVLTNLTSLEYLD 111
G+C LK+LLEL LS N F G LPQCL+NLT+L+VLD++ N+ SGN SV++ LTSL+YL
Sbjct: 1206 GLCGLKSLLELGLSVNQFSGPLPQCLSNLTNLQVLDLTSNEFSGNIQSVVSKLTSLKYLF 1265
Query: 112 LSFIDFQGTFLINSLANHSKLEVLVLSSGNDMLQVKTE--NWLPTYPLKVLQLSHCHLNV 169
LS F+G F +SLANH KLE+ LSSG+ ML+++TE W PT+ LKV+ L +C+LN+
Sbjct: 1266 LSGNKFEGLFSFSSLANHKKLEIFELSSGSTMLELETEIPVWFPTFQLKVIDLPNCNLNL 1325
Query: 170 NS----SFLLHQHHLKFLDLSHNQLVGNFPTWLLQNNTGLEVLILWNNSFSGILPRLPNA 225
+ SFLL+QH L+F+DLSHN L+G FP+W+LQNN+ LEV+ + NNSF+G +LP+
Sbjct: 1326 RTRRIPSFLLYQHDLQFIDLSHNNLIGAFPSWILQNNSRLEVMNMMNNSFTGTF-QLPSY 1384
Query: 226 KYDKLRHLDISTNNFSGKLPENLGIVFQKLIYLDVSKNSFEGNIPYSISEMKELITLDLS 285
+++ L +L IS+N+ +G++P+++G++ L YL++S N FEGNIP SIS+M+ L LDLS
Sbjct: 1385 RHE-LINLKISSNSIAGQIPKDIGLLLSNLRYLNMSWNCFEGNIPSSISQMEGLSILDLS 1443
Query: 286 RNNFSGELPRSIFSSCLSLETLDLSNNNFYGQLFPNFMNLTHLSSLRLNNNHFSGKMADG 345
N FSGELPRS+ S+ L L LSNNNF G++FP MNL L+ L +NNN+FSGK+
Sbjct: 1444 NNYFSGELPRSLLSNSTYLVALVLSNNNFQGRIFPETMNLEELTVLDMNNNNFSGKIDVD 1503
Query: 346 LLSSTLLDVLDVSNNKLSGDIPHWIGNFSVLWLLLMSENYLQGSIPVQLGNLESLEFIDI 405
L VLD+S NK++G IP+QL NL S+E +D+
Sbjct: 1504 FFYCPRLSVLDISKNKVAG------------------------VIPIQLCNLSSVEILDL 1539
Query: 406 SENGLSVSMVSLSNLSSVKHIYLHNNAINGLIPIALLRSSTLLTLDLRDNKFFGRIPHQI 465
SEN +M S N SS+++++L N +NGLIP L RSS L+ +DLR+NKF G IP I
Sbjct: 1540 SENRFFGAMPSCFNASSLRYLFLQKNGLNGLIPHVLSRSSNLVVVDLRNNKFSGNIPSWI 1599
Query: 466 NELSNLHFLLLRGNSLQGRIPN 487
++LS LH LLL GN+L G IPN
Sbjct: 1600 SQLSELHVLLLGGNALGGHIPN 1621
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|359483099|ref|XP_002262931.2| PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At4g36180-like [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 369 bits (947), Expect = 2e-99, Method: Compositional matrix adjust.
Identities = 230/491 (46%), Positives = 318/491 (64%), Gaps = 12/491 (2%)
Query: 4 FGSLKQLKILNLGFNFFIDSILPY-LNTLTSLTTLNLRYNKIEGSRTKQGICNLKNLLEL 62
F SL L+IL+L +N F ILP + ++SL +L+L N++ GS QG C L L EL
Sbjct: 264 FASLSNLEILDLSYNSF-SGILPSSIRLMSSLKSLSLAGNQLNGSLPNQGFCQLNKLQEL 322
Query: 63 DLSSNNFEGHLPQCLNNLTHLKVLDISYNQLSGNFPSVLTNLTSL-EYLDLSFIDFQGTF 121
DL+SN F+G LP CLNNLT L++LD+S+N SGN S L + EY+DLS+ F+G F
Sbjct: 323 DLNSNFFQGILPPCLNNLTSLRLLDLSHNLFSGNVSSSLLPSLTSLEYIDLSYNLFEGPF 382
Query: 122 LINSLANHSKLEVLVLSSGNDMLQVKTE---NWLPTYPLKVLQLSHCHLNVN-SSFLLHQ 177
NS ANHS L+V++ S N+ +++TE W+P + LKVL LS+ L + FL +Q
Sbjct: 383 SFNSFANHSNLQVVIHGSDNNKFEIETEYPVGWVPLFQLKVLVLSNYKLIGDFPGFLRYQ 442
Query: 178 HHLKFLDLSHNQLVGNFPTWLLQNNTGLEVLILWNNSFSG-ILPRLPNAKYDKLRHLDIS 236
L +DLSHN L G+FP WLL+NNT LE L+L NNS G +LP PN++ + LDIS
Sbjct: 443 FRLTVVDLSHNNLTGSFPNWLLENNTRLEYLVLRNNSLMGQLLPLRPNSR---ITSLDIS 499
Query: 237 TNNFSGKLPENLGIVFQKLIYLDVSKNSFEGNIPYSISEMKELITLDLSRNNFSGELPRS 296
N G+L +N+ + + +L++S N FEG +P SI+EM L +LDLS N+FSGE+P+
Sbjct: 500 DNRLVGELQQNVANMIPNIEHLNLSNNGFEGILPSSIAEMSSLWSLDLSANSFSGEVPKQ 559
Query: 297 IFSSCLSLETLDLSNNNFYGQLFPNFMNLTHLSSLRLNNNHFSGKMADGLLSSTLLDVLD 356
+ + LE L LSNN F+G++F NLT L L L+NN F G +++ + S+ L VLD
Sbjct: 560 LLVA-KDLEFLKLSNNKFHGEIFSRDFNLTSLEFLHLDNNQFKGTLSNVISRSSWLRVLD 618
Query: 357 VSNNKLSGDIPHWIGNFSVLWLLLMSENYLQGSIPVQLGNLESLEFIDISENGLSVSMVS 416
VSNN +SG+IP WIGN + L L++ N +G +P ++ L+ LEF+D+S+N LS S+ S
Sbjct: 619 VSNNNMSGEIPSWIGNMTDLTTLVLGNNSFKGKLPPEISQLQRLEFLDVSQNTLSGSLPS 678
Query: 417 LSNLSSVKHIYLHNNAINGLIPIALLRSSTLLTLDLRDNKFFGRIPHQINELSNLHFLLL 476
L ++ +KH++L N GLIP L SS LLTLD+RDN+ FG IP+ I+ L L LL
Sbjct: 679 LKSIEYLKHLHLQGNMFTGLIPRDFLNSSNLLTLDIRDNRLFGSIPNSISRLLELRIFLL 738
Query: 477 RGNSLQGRIPN 487
RGN L G IPN
Sbjct: 739 RGNLLSGFIPN 749
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|359482757|ref|XP_002268914.2| PREDICTED: LRR receptor-like serine/threonine-protein kinase FLS2-like [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 365 bits (938), Expect = 2e-98, Method: Compositional matrix adjust.
Identities = 229/499 (45%), Positives = 309/499 (61%), Gaps = 37/499 (7%)
Query: 1 YDSFGSLKQLKILNLGFNFFIDSILPYLNTLTSLTTLNLRYNKIEGSRTKQ--------- 51
+ S LK+L+ILNLG N F +I+ L+ LTSL TL +RYN IEG Q
Sbjct: 215 FKSLSKLKKLEILNLGDNQFNKTIIKQLSGLTSLKTLVVRYNYIEGLFPSQDSMAPYQSK 274
Query: 52 --------GICNLKNLLELDLSSNNFEGHLPQCLNNLTHLKVLDISYNQLSGNFPS-VLT 102
G C L L ELDLS N F+G LP CLNN T L++LDIS N SGN S +L
Sbjct: 275 LHVLFSFVGFCQLNKLQELDLSYNLFQGILPPCLNNFTSLRLLDISANLFSGNLSSPLLP 334
Query: 103 NLTSLEYLDLSFIDFQGTFLINSLANHSKLEVLVLSSGNDMLQ----------VKTE--- 149
NLTSLEY+DLS+ F+G+F +S ANHSKL+V++L N++ + V+TE
Sbjct: 335 NLTSLEYIDLSYNQFEGSFSFSSFANHSKLQVVILGRDNNIFEEVGRDNNKFEVETEYPV 394
Query: 150 NWLPTYPLKVLQLSHCHLNVN-SSFLLHQHHLKFLDLSHNQLVGNFPTWLLQNNTGLEVL 208
W+P + LKVL LS C L + FL +Q L +DLSHN L G+FP WLL NNT LE L
Sbjct: 395 GWVPLFQLKVLSLSSCKLTGDLPGFLQYQFRLVGVDLSHNNLTGSFPNWLLANNTRLEFL 454
Query: 209 ILWNNSFSG-ILPRLPNAKYDKLRHLDISTNNFSGKLPENLGIVFQKLIYLDVSKNSFEG 267
+L NNS G +LP PN + + LDIS N G+L EN+ + ++ L++S N FEG
Sbjct: 455 VLRNNSLMGQLLPLGPNTR---INSLDISHNQLDGQLQENVAHMIPNIMSLNLSNNGFEG 511
Query: 268 NIPYSISEMKELITLDLSRNNFSGELPRSIFSSCLSLETLDLSNNNFYGQLFPNFMNLTH 327
+P SI+E++ L LDL NNFS E+P+ + ++ LE L LSNN F+G++F NLT
Sbjct: 512 ILPSSIAELRALSMLDLFTNNFSREVPKQLLAA-KDLEILKLSNNKFHGEIFSRDFNLTW 570
Query: 328 LSSLRLNNNHFSGKMADGLLSSTLLDVLDVSNNKLSGDIPHWIGNFSVLWLLLMSENYLQ 387
L L L NN F+G +++ + S+LL VLDVSNN +SG+IP WIGN + L L+M N +
Sbjct: 571 LKHLYLGNNQFTGTLSNVICRSSLLRVLDVSNNYMSGEIPSWIGNMTGLGTLVMGNNNFK 630
Query: 388 GSIPVQLGNLESLEFIDISENGLSVSMVSLSNLSSVKHIYLHNNAINGLIPIALLRSSTL 447
G +P ++ L + F+DIS+N LS S+ SL ++ ++H++L N GLIP L SS L
Sbjct: 631 GKLPPEISQLSGMMFLDISQNALSGSLPSLKSMEYLEHLHLQGNMFTGLIPRDFLNSSNL 690
Query: 448 LTLDLRDNKFFGRIPHQIN 466
LTLD+R+N+ FG IP I+
Sbjct: 691 LTLDIRENRLFGSIPDSIS 709
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|359476165|ref|XP_002283141.2| PREDICTED: LRR receptor-like serine/threonine-protein kinase GSO1-like [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 364 bits (934), Expect = 6e-98, Method: Compositional matrix adjust.
Identities = 228/488 (46%), Positives = 309/488 (63%), Gaps = 13/488 (2%)
Query: 7 LKQLKILNLGFNFFIDSILPYLNTLTSLTTLNLRYNKIEGSRTK-QGICNLKNLLELDLS 65
L+ L++L+L SIL + +TSL L+LR N I GS+T QG+C LKNL ELDLS
Sbjct: 691 LRNLEVLDLSSTNISSSILQIVEVMTSLKALSLRSNGINGSQTALQGLCKLKNLQELDLS 750
Query: 66 SNNFEGHLPQCLNNLTHLKVLDISYNQLSGNFPSVL-TNLTSLEYLDLSFIDFQGTFLIN 124
N FEG + CL NLT L+ LD+S N+ SGN S L L LE+L LS FQ I+
Sbjct: 751 DNGFEGSVSPCLGNLTSLRALDLSKNRFSGNLDSSLFAGLMKLEFLSLSHNVFQTFPPIS 810
Query: 125 SLANHSKLEVLVLSSGNDMLQVKTEN--WLPTYPLKVLQLSHCHLNVNS--SFLLHQHHL 180
S A HSKLEVL L GN+ L +++E+ W+P++ LKV +LS C L S SFL +QH L
Sbjct: 811 SFAKHSKLEVLDLICGNNTLLLESEDQTWVPSFQLKVFRLSSCILKTGSIPSFLHYQHDL 870
Query: 181 KFLDLSHNQLVGNFPTWLLQNNTGLEVLILWNNSFSGI--LPRLPNAKYDKLRHLDISTN 238
+ +DLS++ L +FPTWL++NNT LE L L NNS +G LP PN + DIS N
Sbjct: 871 RVVDLSNSSLEEDFPTWLMKNNTRLEELNLKNNSLTGYFHLPYRPNIFTSAI---DISNN 927
Query: 239 NFSGKLPENLGIVFQKLIYLDVSKNSFEGNIPYSISEMKELITLDLSRNNFSGELPRSIF 298
G++P N+ + L++L+VS+NSFEG+IP S M++L+ LDLS N F+G +P +
Sbjct: 928 LLQGQMPSNISVSLPNLMFLNVSRNSFEGSIP-SFGGMRKLLFLDLSNNLFTGGIPEDLA 986
Query: 299 SSCLSLETLDLSNNNFYGQLFPNFMNLTHLSSLRLNNNHFSGKMADGLLSSTLLDVLDVS 358
C SLE L LS N+ +GQ+FP NL L L L++NHFSGK+ D L +S+ L+ L VS
Sbjct: 987 MGCPSLEYLILSKNDLHGQMFPRVSNLPSLRHLELDDNHFSGKIPD-LSNSSGLERLYVS 1045
Query: 359 NNKLSGDIPHWIGNFSVLWLLLMSENYLQGSIPVQLGNLESLEFIDISENGLSVSMVSLS 418
+N +SG +P WIGN S L L+M N L+G IPV+ +L++LE +D+S N LS S+ S
Sbjct: 1046 HNSISGKLPGWIGNMSNLAALVMPNNSLEGPIPVEFCSLDALELLDLSNNNLSGSLPSCF 1105
Query: 419 NLSSVKHIYLHNNAINGLIPIALLRSSTLLTLDLRDNKFFGRIPHQINELSNLHFLLLRG 478
+ S + H++L N + G + A RS L TLD+R+N G IP I+ S L LLL+G
Sbjct: 1106 SPSLLIHVHLQENHLTGPLTKAFTRSMDLATLDIRNNNLSGGIPDWISMFSGLSILLLKG 1165
Query: 479 NSLQGRIP 486
N QG+IP
Sbjct: 1166 NHFQGKIP 1173
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|12324907|gb|AAG52409.1|AC020579_11 putative disease resistance protein; 46848-50365 [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 361 bits (927), Expect = 4e-97, Method: Compositional matrix adjust.
Identities = 224/512 (43%), Positives = 314/512 (61%), Gaps = 32/512 (6%)
Query: 1 YDSFGSLKQLKILNLGFNFFIDSILPYLNTLTSLTTLNLRYNKIEGS------------- 47
Y S L++L+IL+L N F +SI +L+ TSLTTL LR N ++GS
Sbjct: 108 YKSLRKLRKLEILDLASNKFNNSIFHFLSAATSLTTLFLRSNNMDGSFPAKELRDLTNLE 167
Query: 48 -----RTK-------QGICNLKNLLELDLSSNNFEGHLPQCLNNLTHLKVLDISYNQLSG 95
R + QGIC L N+ ELDLS N GHLP CL +LT L+VLD+S N+L+G
Sbjct: 168 LLDLSRNRFNGSIPIQGICELNNMQELDLSQNKLVGHLPSCLTSLTGLRVLDLSSNKLTG 227
Query: 96 NFPSVLTNLTSLEYLDLSFIDFQGTFLINSLANHSKLEVLVLSSGNDMLQVKTEN-WLPT 154
PS L +L SLEYL L DF+G+F SLAN S L VL L S + LQV +E+ W P
Sbjct: 228 TVPSSLGSLQSLEYLSLFDNDFEGSFSFGSLANLSNLMVLKLCSKSSSLQVLSESSWKPK 287
Query: 155 YPLKVLQLSHCHLNVNSSFLLHQHHLKFLDLSHNQLVGNFPTWLLQNNTGLEVLILWNNS 214
+ L V+ L C++ FLLHQ L+ +DLS N + G P+WLL NNT L+VL+L NN
Sbjct: 288 FQLSVIALRSCNMEKVPHFLLHQKDLRHVDLSDNNISGKLPSWLLANNTKLKVLLLQNNL 347
Query: 215 FSGILPRLPNAKYDKLRHLDISTNNFSGKLPENLGIVFQKLIYLDVSKNSFEGNIPYSIS 274
F+ ++P + ++ L LD+S N+F+ PEN+G +F L YL+ SKN+F+ N+P S+
Sbjct: 348 FTSF--QIPKSAHN-LLFLDVSANDFNHLFPENIGWIFPHLRYLNTSKNNFQENLPSSLG 404
Query: 275 EMKELITLDLSRNNFSGELPRSIFSSCLSLETLDLSNNNFYGQLFPNFMNLTHLSSLRLN 334
M + +DLSRN+F G LPRS + C S+ L LS+N G++FP N T++ L ++
Sbjct: 405 NMNGIQYMDLSRNSFHGNLPRSFVNGCYSMAILKLSHNKLSGEIFPESTNFTNILGLFMD 464
Query: 335 NNHFSGKMADGLLSSTLLDVLDVSNNKLSGDIPHWIGNFSVLWLLLMSENYLQGSIPVQL 394
NN F+GK+ GL S L++LD+SNN L+G IP WIG L LL+S+N+L+G IP+ L
Sbjct: 465 NNLFTGKIGQGLRSLINLELLDMSNNNLTGVIPSWIGELPSLTALLISDNFLKGDIPMSL 524
Query: 395 GNLESLEFIDISENGLSVSMVSLSNLSSVKHIYLHNNAINGLIPIALLRSSTLLTLDLRD 454
N SL+ +D+S N LS + + + + L +N ++G IP LL + + LDLR+
Sbjct: 525 FNKSSLQLLDLSANSLSGVIPPQHDSRNGVVLLLQDNKLSGTIPDTLL--ANVEILDLRN 582
Query: 455 NKFFGRIPHQINELSNLHFLLLRGNSLQGRIP 486
N+F G+IP IN + N+ LLLRGN+ G+IP
Sbjct: 583 NRFSGKIPEFIN-IQNISILLLRGNNFTGQIP 613
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|359483101|ref|XP_002269212.2| PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At4g36180-like [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 358 bits (920), Expect = 3e-96, Method: Compositional matrix adjust.
Identities = 223/463 (48%), Positives = 304/463 (65%), Gaps = 10/463 (2%)
Query: 31 LTSLTTLNLRYNKIEGSRTKQGICNLKNLLELDLSSNNFEGHLPQCLNNLTHLKVLDISY 90
++SL L+L N + S QG+C L L ELDL+SN F G LP CLNNLT L++LD+S
Sbjct: 1 MSSLKFLSLARNGLNSSLQDQGLCQLNKLQELDLNSNFFHGILPPCLNNLTSLRLLDLSS 60
Query: 91 NQLSGNFPS-VLTNLTSLEYLDLSFIDFQGTFLINSLANHSKLEVLVLSSGNDMLQVKTE 149
N SGN S +L NLTSLEY+DLS F+ +F +S +NHSKL+V++L SG + +V+TE
Sbjct: 61 NLFSGNASSSLLANLTSLEYIDLSHNLFEDSFSFSSFSNHSKLQVVILGSGYNKFEVETE 120
Query: 150 ---NWLPTYPLKVLQLSHCHLNVN-SSFLLHQHHLKFLDLSHNQLVGNFPTWLLQNNTGL 205
W+P + LK L LS+C L + FL +Q L +DLSHN L G+FP WLL+NNT L
Sbjct: 121 YPVGWVPLFQLKTLVLSYCKLTGDLPGFLQYQFKLMVVDLSHNNLTGSFPNWLLENNTRL 180
Query: 206 EVLILWNNSFSG-ILPRLPNAKYDKLRHLDISTNNFSGKLPENLGIVFQKLIYLDVSKNS 264
E L L NNS G +LP PN ++ LDIS N G+L EN+ + ++YL++S N
Sbjct: 181 EYLFLRNNSLMGQLLPLRPNTH---IKLLDISHNKLDGQLQENVPNMIPNIMYLNLSNNG 237
Query: 265 FEGNIPYSISEMKELITLDLSRNNFSGELPRSIFSSCLSLETLDLSNNNFYGQLFPNFMN 324
FEG +P SI+EM L LDLS N+FSGE+P+ + ++ L L LSNN F+G++F N
Sbjct: 238 FEGILPSSIAEMSSLWALDLSTNSFSGEVPKQLLATK-DLWILKLSNNKFHGEIFSRDFN 296
Query: 325 LTHLSSLRLNNNHFSGKMADGLLSSTLLDVLDVSNNKLSGDIPHWIGNFSVLWLLLMSEN 384
LT L L L NN F+G +++ + S+ L LDVSNN +SG+IP+WIGN + L L++ N
Sbjct: 297 LTGLRYLYLGNNQFTGTLSNVISRSSWLWELDVSNNYMSGEIPNWIGNMTYLTTLVLGNN 356
Query: 385 YLQGSIPVQLGNLESLEFIDISENGLSVSMVSLSNLSSVKHIYLHNNAINGLIPIALLRS 444
+G +P ++ L+SLEF+D+S+N LS S+ SL ++ ++H++L N GLIP L S
Sbjct: 357 SFKGKLPPEISQLQSLEFLDVSQNALSGSLPSLKSMKYLEHLHLQGNMFIGLIPRDFLNS 416
Query: 445 STLLTLDLRDNKFFGRIPHQINELSNLHFLLLRGNSLQGRIPN 487
S LLTLD+RDN+ FG IP+ I+ L L LLLRGN L G IPN
Sbjct: 417 SYLLTLDIRDNRLFGSIPNSISALLKLKILLLRGNLLSGFIPN 459
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|359483163|ref|XP_002263908.2| PREDICTED: LRR receptor-like serine/threonine-protein kinase GSO1-like [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 358 bits (919), Expect = 3e-96, Method: Compositional matrix adjust.
Identities = 220/486 (45%), Positives = 303/486 (62%), Gaps = 12/486 (2%)
Query: 9 QLKILNLGFNFFIDSILPYLNTLTSLTTLNLRYNKIEGSRTKQGICNLKNLLELDLSSNN 68
+L++L+LG N I SI ++ L+SL L+LR N + S +G C +K L +LDLS N
Sbjct: 263 KLEVLDLGDNALIGSIPQFIWNLSSLQILSLRKNMLNSSLPSEGFCRMKKLKKLDLSWNR 322
Query: 69 FEGHLPQCLNNLTHLKVLDISYNQLSGNFPS-VLTNLTSLEYLDLSFIDFQGTFLINSLA 127
F+G LP CL+NL L+ LD+S+NQ +G+ S +++NLTSLEY+ L + F G F +S A
Sbjct: 323 FDGMLPTCLSNLKSLRELDLSFNQFTGSVSSSLISNLTSLEYIHLGYNHFTGLFSFSSFA 382
Query: 128 NHSKLEVLVLSSGNDMLQVKTE--NWLPTYPLKVLQLSHCHLNVNSS----FLLHQHHLK 181
NHSKLEV+ L S +D +V+TE W+P + LKVL LS C+LN + FL HQ +L
Sbjct: 383 NHSKLEVVALPSNDDNFEVETEYTTWVPKFQLKVLVLSRCNLNKLTGDIPKFLSHQAYLL 442
Query: 182 FLDLSHNQLVGNFPTWLLQNNTGLEVLILWNNSFSGILPRLPNAKYDKLRHLDISTNNFS 241
+DLSHN L G+ P W+L+NN LE L L NNSF+G P LP+ L +DIS NNFS
Sbjct: 443 QVDLSHNNLKGDLPNWMLENNRRLEYLDLRNNSFNGQFP-LPSYPNMLLLSVDISKNNFS 501
Query: 242 GKLPENLGIVFQKLIYLDVSKNSFEGNIPYSISEMKELITLDLSRNNFSGELPRSIFSSC 301
G L EN G + L +L++++N+FEG IP I + L LDLS NNFSGE+P + C
Sbjct: 502 GLLQENFGEMLPCLEWLNLAENAFEGQIPPLICNISSLWFLDLSSNNFSGEVPAQLTVGC 561
Query: 302 LSLETLDLSNNNFYGQLFPNFMNLTHLSSLRLNNNHFSGKMADGLLSSTLLDVLDVSNNK 361
+L L LS+N F+G +F NL L L L+NN F+G ++ GLL+ + L LD+ NN
Sbjct: 562 TNLYVLKLSDNRFHGPIFSTQFNLPLLQVLLLDNNQFTGTLS-GLLNCSWLTFLDIRNNY 620
Query: 362 LSGDIPHWIGNFSVLWLLLMSENYLQGSIPVQLGNLESLEFIDISENGLSVSMVSLSNLS 421
SG+IP W+ + L L+M N G IP + + ++++D+S N + S+ S S+L
Sbjct: 621 FSGEIPKWMHGMTNLRTLIMGNNSFHGRIPHEFTD---VQYVDLSYNSFTGSLPSFSHLG 677
Query: 422 SVKHIYLHNNAINGLIPIALLRSSTLLTLDLRDNKFFGRIPHQINELSNLHFLLLRGNSL 481
VKH++L NA G IP +L LLTLDL DN G+IPH I + S L L LRGN+
Sbjct: 678 FVKHLHLQGNAFTGSIPKHVLNPEFLLTLDLGDNNISGKIPHSIGQFSELRVLSLRGNNF 737
Query: 482 QGRIPN 487
G+IPN
Sbjct: 738 IGQIPN 743
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|359482745|ref|XP_003632825.1| PREDICTED: leucine-rich repeat receptor protein kinase EXS-like [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 358 bits (918), Expect = 4e-96, Method: Compositional matrix adjust.
Identities = 226/517 (43%), Positives = 308/517 (59%), Gaps = 36/517 (6%)
Query: 4 FGSLKQLKILNLGFNFFIDSILPYLNTLTSLTTLNL------------------------ 39
F SL L++L+L +N F SI + ++S+ L +
Sbjct: 215 FASLSNLELLDLSYNLFSGSIPSSIRLMSSINNLEVLDLSGNSFSGIVPSSIRLLSSLKS 274
Query: 40 ---RYNKIEGSRTKQGICNLKNLLELDLSSNNFEGHLPQCLNNLTHLKVLDISYNQLSGN 96
N + GS QG C L L ELDLS N F+G LP CLNNLT L++LD+S N SGN
Sbjct: 275 LSLAGNHLNGSLANQGFCQLNKLQELDLSYNLFQGILPPCLNNLTSLRLLDLSVNLFSGN 334
Query: 97 FPS-VLTNLTSLEYLDLSFIDFQGTFLINSLANHSKLEVLVLSSGNDMLQVKTE---NWL 152
S +L NLTSLEY+DLS+ F+G+F +S ANHSKL+++ L N+ +V+TE W+
Sbjct: 335 LSSPLLPNLTSLEYIDLSYNQFEGSFSFSSFANHSKLQMVKLGMNNNKFEVETEYPIGWV 394
Query: 153 PTYPLKVLQLSHCHLNVN-SSFLLHQHHLKFLDLSHNQLVGNFPTWLLQNNTGLEVLILW 211
P + LK L L C L + SFL +Q L +DLSHN L G+FP WLL+NNT L+ L+L
Sbjct: 395 PLFQLKALSLDSCKLTGDLPSFLQYQFRLVGVDLSHNNLTGSFPNWLLENNTRLKSLVLR 454
Query: 212 NNSFSGILPRLPNAKYDKLRHLDISTNNFSGKLPENLGIVFQKLIYLDVSKNSFEGNIPY 271
NNS G L LP + ++ LDIS N G+L EN+ + + YL++S N FEG +P
Sbjct: 455 NNSLMGQL--LPLERNTRIHSLDISHNQLDGQLQENVAHMIPNMKYLNLSDNGFEGILPS 512
Query: 272 SISEMKELITLDLSRNNFSGELPRSIFSSCLSLETLDLSNNNFYGQLFPNFMNLTHLSSL 331
SI E++ L LDLS NNFSGE+P+ + ++ L L LSNN F+G++F NL L L
Sbjct: 513 SIVELRALWYLDLSTNNFSGEVPKQLLAA-KDLGVLKLSNNKFHGEIFSRDFNLIRLEVL 571
Query: 332 RLNNNHFSGKMADGLLSSTLLDVLDVSNNKLSGDIPHWIGNFSVLWLLLMSENYLQGSIP 391
L NN +G +++ + S+ L VLDVSNN +SG+IP IGN + L L++ N +G +P
Sbjct: 572 YLGNNQLTGTLSNVISKSSWLGVLDVSNNYMSGEIPSQIGNMTYLTTLVLGNNSFKGKLP 631
Query: 392 VQLGNLESLEFIDISENGLSVSMVSLSNLSSVKHIYLHNNAINGLIPIALLRSSTLLTLD 451
++ L LEF+D+S+N LS S+ L + S+KH++L N GLIP L SS LLTLD
Sbjct: 632 PEISQLWGLEFLDVSQNALSGSLPCLKTMESLKHLHLQGNMFTGLIPRDFLNSSHLLTLD 691
Query: 452 LRDNKFFGRIPHQINE-LSNLHFLLLRGNSLQGRIPN 487
+RDN+ FG IP+ I+ L L LL GN L G IPN
Sbjct: 692 MRDNRLFGSIPNSISALLKQLRIFLLGGNLLSGFIPN 728
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 487 | ||||||
| TAIR|locus:2037308 | 976 | RLP14 "AT1G74180" [Arabidopsis | 0.979 | 0.488 | 0.418 | 8.6e-88 | |
| TAIR|locus:2019662 | 965 | RLP15 "AT1G74190" [Arabidopsis | 0.887 | 0.447 | 0.421 | 2e-86 | |
| TAIR|locus:2025012 | 1083 | RLP1 "AT1G07390" [Arabidopsis | 0.882 | 0.397 | 0.422 | 8.2e-85 | |
| TAIR|locus:2037313 | 1000 | RLP13 "AT1G74170" [Arabidopsis | 0.893 | 0.435 | 0.406 | 1.4e-80 | |
| TAIR|locus:2101943 | 891 | RLP45 "AT3G53240" [Arabidopsis | 0.969 | 0.529 | 0.382 | 1e-77 | |
| TAIR|locus:2155909 | 908 | RLP56 "AT5G49290" [Arabidopsis | 0.971 | 0.520 | 0.389 | 6.3e-76 | |
| TAIR|locus:2040075 | 935 | RLP21 "AT2G25470" [Arabidopsis | 0.897 | 0.467 | 0.380 | 2e-65 | |
| TAIR|locus:2091353 | 1016 | AT3G28040 [Arabidopsis thalian | 0.887 | 0.425 | 0.335 | 4.4e-46 | |
| TAIR|locus:2094603 | 835 | RLP37 "receptor like protein 3 | 0.878 | 0.512 | 0.306 | 5.6e-45 | |
| TAIR|locus:2156349 | 1252 | GSO2 "GASSHO 2" [Arabidopsis t | 0.956 | 0.372 | 0.300 | 2.3e-44 |
| TAIR|locus:2037308 RLP14 "AT1G74180" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 877 (313.8 bits), Expect = 8.6e-88, P = 8.6e-88
Identities = 204/487 (41%), Positives = 285/487 (58%)
Query: 4 FGSLKQLKILNLGFNFFIDSI-LPYXXXXXXXXXXXXRYNKIEGSRTKQGICNLKNLLEL 62
F L++LK L+L N F + L +N ++G K+ C +KNL +L
Sbjct: 206 FTHLEKLKALDLSANDFSSLVELQELKVLTNLEVLGLAWNHLDGPIPKEVFCEMKNLRQL 265
Query: 63 DLSSNNFEGHLPQCLNNLTHLKVLDISYNQLSGNFPSVLTNLTSLEYLDLSFIDFQGTFL 122
DL N FEG LP CL NL L+VLD+S NQLSGN P+ +L SLEYL LS +F+G F
Sbjct: 266 DLRGNYFEGQLPVCLGNLNKLRVLDLSSNQLSGNLPASFNSLESLEYLSLSDNNFEGFFS 325
Query: 123 INSLANHSKLEVLVLSSGNDMLQVKTE-NWLPTYPLKVLQLSHCHLNVNSSFLLHQHHLK 181
+N LAN +KL+V LSS ++MLQV+TE NWLP + L V L C L +FL++Q +L+
Sbjct: 326 LNPLANLTKLKVFRLSSTSEMLQVETESNWLPKFQLTVAALPFCSLGKIPNFLVYQTNLR 385
Query: 182 FLDLSHNQLVGNFPTWLLQNNTGLEVLILWNNSFSGILPRLPNAKYDKLRHLDISTNNFS 241
+DLS N+L G+ PTWLL+NN L+VL L NNSF+ + ++P + KL+ LD S N+ +
Sbjct: 386 LVDLSSNRLSGDIPTWLLENNPELKVLQLKNNSFT--IFQIPTIVH-KLQVLDFSANDIT 442
Query: 242 GKLPENLGIVFQKLIYLDVSKNSFEGNIPYSISEMKELITLDLSRNNFSGELPRSIFSSC 301
G LP+N+G V +L++++ S N F+GN+P S+ EM ++ LDLS NNFSGELPRS+ + C
Sbjct: 443 GVLPDNIGHVLPRLLHMNGSHNGFQGNLPSSMGEMNDISFLDLSYNNFSGELPRSLLTGC 502
Query: 302 LSLETLDLSNNNFYGQLFPNFMNLTHLSSLRLNNNHFSGKMADGXXXXXXXXXXXXXNNK 361
SL TL LS+N+F G + P LT L LR++NN F+G++ G NN+
Sbjct: 503 FSLITLQLSHNSFSGPILPIQTRLTSLIVLRMHNNLFTGEIGVGLRTLVNLSIFDASNNR 562
Query: 362 LSGDIPHWIG-NFSVLWLLLMSENYLQGSIPVQLGNLESLEFIDISENGXXXXXXXXXXX 420
L+G I I + S L +LL+S N L+G++P L + L F+D+S N
Sbjct: 563 LTGLISSSIPPDSSHLIMLLLSNNLLEGTLPPSLLAIHHLNFLDLSGNLLSGDLPSSVVN 622
Query: 421 XXXK-HIYLHNNAINGLIPIAXXXXXXXXXXXXXXNKFFGRIPHQINELSNLHFLLLRGN 479
I+LHNN+ G +P+ NK G IP +N + LLLRGN
Sbjct: 623 SMYGIKIFLHNNSFTGPLPVTLLENAYILDLRN--NKLSGSIPQFVNT-GKMITLLLRGN 679
Query: 480 SLQGRIP 486
+L G IP
Sbjct: 680 NLTGSIP 686
|
|
| TAIR|locus:2019662 RLP15 "AT1G74190" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 864 (309.2 bits), Expect = 2.0e-86, P = 2.0e-86
Identities = 185/439 (42%), Positives = 258/439 (58%)
Query: 50 KQGICNLKNLLELDLSSNNFEGHLPQCLNNLTHLKVLDISYNQLSGNFPSVLTNLTSLEY 109
+ GIC L N+ ELDLS N GHLP CL +LT L+VLD+S N+L+G PS L +L SLEY
Sbjct: 237 QSGICELNNMQELDLSQNKLVGHLPSCLTSLTGLRVLDLSSNKLTGTVPSSLGSLQSLEY 296
Query: 110 LDLSFIDFQGTFLINSLANHSKLEVLVLSSGNDMLQVKTEN-WLPTYPLKVLQLSHCHLN 168
L L DF+G+F SLAN S L VL L S + LQV +E+ W P + L V+ L C++
Sbjct: 297 LSLFDNDFEGSFSFGSLANLSNLMVLKLCSKSSSLQVLSESSWKPKFQLSVIALRSCNME 356
Query: 169 VNSSFLLHQHHLKFLDLSHNQLVGNFPTWLLQNNTGLEVLILWNNSFSGILPRLPNAKYD 228
FLLHQ L+ +DLS N + G P+WLL NNT L+VL+L NN F+ ++P + ++
Sbjct: 357 KVPHFLLHQKDLRHVDLSDNNISGKLPSWLLANNTKLKVLLLQNNLFTSF--QIPKSAHN 414
Query: 229 KLRHLDISTNNFSGKLPENLGIVFQKLIYLDVSKNSFEGNIPYSISEMKELITLDLSRNN 288
L LD+S N+F+ PEN+G +F L YL+ SKN+F+ N+P S+ M + +DLSRN+
Sbjct: 415 LL-FLDVSANDFNHLFPENIGWIFPHLRYLNTSKNNFQENLPSSLGNMNGIQYMDLSRNS 473
Query: 289 FSGELPRSIFSSCLSLETLDLSNNNFYGQLFPNFMNLTHLSSLRLNNNHFSGKMADGXXX 348
F G LPRS + C S+ L LS+N G++FP N T++ L ++NN F+GK+ G
Sbjct: 474 FHGNLPRSFVNGCYSMAILKLSHNKLSGEIFPESTNFTNILGLFMDNNLFTGKIGQGLRS 533
Query: 349 XXXXXXXXXXNNKLSGDIPHWIGNFSVLWLLLMSENYLQGSIPVQLGNLESLEFIDISEN 408
NN L+G IP WIG L LL+S+N+L+G IP+ L N SL+ +D+S N
Sbjct: 534 LINLELLDMSNNNLTGVIPSWIGELPSLTALLISDNFLKGDIPMSLFNKSSLQLLDLSAN 593
Query: 409 GXXXXXXXXXXXXXXKHIYLHNNAINGLIPIAXXXXXXXXXXXXXXNKFFGRIPHQINEL 468
+ L +N ++G IP N+F G+IP IN +
Sbjct: 594 SLSGVIPPQHDSRNGVVLLLQDNKLSGTIP--DTLLANVEILDLRNNRFSGKIPEFIN-I 650
Query: 469 SNLHFLLLRGNSLQGRIPN 487
N+ LLLRGN+ G+IP+
Sbjct: 651 QNISILLLRGNNFTGQIPH 669
|
|
| TAIR|locus:2025012 RLP1 "AT1G07390" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 802 (287.4 bits), Expect = 8.2e-85, Sum P(2) = 8.2e-85
Identities = 185/438 (42%), Positives = 245/438 (55%)
Query: 52 GICNLKNLLELDLSSNNFEGHLPQCLNNLTHLKVLDISYNQLSGNFPSVLTNLTS-LEYL 110
GIC L L ELDLSSN LP CL NLTHL+ LD+S NQL+GN S ++ L S LEYL
Sbjct: 353 GICRLMKLRELDLSSNALTS-LPYCLGNLTHLRTLDLSNNQLNGNLSSFVSGLPSVLEYL 411
Query: 111 DLSFIDFQGTFLINSLANHSKLEVLVLSSGNDMLQVKTEN-WLPTYPLKVLQLSHCHLNV 169
L +F G+FL NSL N ++L V LSS ++QV+TE+ W P + LK+L LS+C L
Sbjct: 412 SLLDNNFDGSFLFNSLVNQTRLTVFKLSSKVGVIQVQTESSWAPLFQLKMLYLSNCSLGS 471
Query: 170 NS-SFLLHQHHLKFLDLSHNQLVGNFPTWLLQNNTGLEVLILWNNSFSGILPRLPNAKYD 228
FL+HQ L F+DLSHN+L G FPTWL++NNT L+ ++L NS + + +LP +
Sbjct: 472 TMLGFLVHQRDLCFVDLSHNKLTGTFPTWLVKNNTRLQTILLSGNSLTKL--QLPILVHG 529
Query: 229 KLRHLDISTNNFSGKLPENLGIVFQKLIYLDVSKNSFEGNIPYSISEMKELITLDLSRNN 288
L+ LDIS+N + E++G+VF L +++ S N F+G IP SI EMK L LD+S N
Sbjct: 530 -LQVLDISSNMIYDSIQEDIGMVFPNLRFMNFSSNHFQGTIPSSIGEMKSLQVLDMSSNG 588
Query: 289 FSGELPRSIFSSCLSLETLDLSNNNFYGQLFPNFMNLTHLSSLRLNNNHFSGKMADGXXX 348
G+LP S C SL L LSNN G++F NLT L L L+ N+F+G + +G
Sbjct: 589 LYGQLPIMFLSGCYSLRVLKLSNNQLQGKIFSKHANLTGLVGLFLDGNNFTGSLEEGLLK 648
Query: 349 XXXXXXXXXXNNKLSGDIPHWIGNFSVLWLLLMSENYLQGSIPVQLGNLESLEFIDISEN 408
+N+ SG +P WIG S L L MS N L+G P L +E +DIS N
Sbjct: 649 SKNLTLLDISDNRFSGMLPLWIGRISRLSYLYMSGNQLKGPFPF-LRQSPWVEVMDISHN 707
Query: 409 GXXXXXXXXXXXXXXKHIYLHNNAINGLIPIAXXXXXXXXXXXXXXNKFFGRIPHQINEL 468
+ + L NN GL+P N F G+I + I++
Sbjct: 708 SFSGSIPRNVNFPSLRELRLQNNEFTGLVPGNLFKAAGLEVLDLRNNNFSGKILNTIDQT 767
Query: 469 SNLHFLLLRGNSLQGRIP 486
S L LLLR NS Q IP
Sbjct: 768 SKLRILLLRNNSFQTYIP 785
|
|
| TAIR|locus:2037313 RLP13 "AT1G74170" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 809 (289.8 bits), Expect = 1.4e-80, P = 1.4e-80
Identities = 181/445 (40%), Positives = 253/445 (56%)
Query: 47 SRTK--QGICNLKNLLELDLSSNNFEGHLPQCLNNLTHLKVLDISYNQLSGNFPSVLTNL 104
++TK G C KN+ EL LS+N G P CL +LT L+VLD+S NQL+GN PS L NL
Sbjct: 246 AKTKPLSGTCPWKNMEELKLSNNKLAGQFPLCLTSLTGLRVLDLSSNQLTGNVPSALANL 305
Query: 105 TSLEYLDLSFIDFQGTFLINSLANHSKLEVLVLSSGNDMLQVKTE-NWLPTYPLKVLQLS 163
SLEYL L +F+G F + LAN SKL+VL L S ++ L+V+ E +W P + L V+ L
Sbjct: 306 ESLEYLSLFGNNFEGFFSLGLLANLSKLKVLRLDSQSNSLEVEFETSWKPKFQLVVIALR 365
Query: 164 HCHLNVNSSFLLHQHHLKFLDLSHNQLVGNFPTWLLQNNTGLEVLILWNNSFSGILPRLP 223
C+L FLLHQ L +DLS NQ+ GNFP+WLL+NNT LEVL+L NNSF+ +LP
Sbjct: 366 SCNLEKVPHFLLHQKDLHHVDLSDNQIHGNFPSWLLENNTKLEVLLLQNNSFTSF--QLP 423
Query: 224 NAKYDKLRHLDISTNNFSGKLPENLGIVFQKLIYLDVSKNSFEGNIPYSISEMKELITLD 283
+ ++ L L++S N F+ +N G + L+ ++++ N F+GN+P S+ MK + LD
Sbjct: 424 KSAHNLL-FLNVSVNKFNHLFLQNFGWILPHLVCVNLAYNGFQGNLPSSLDNMKSIEFLD 482
Query: 284 LSRNNFSGELPRSIFSSCLSLETLDLSNNNFYGQLFPNFMNLTHLSSLRLNNNHFSGKMA 343
LS N F G+LPR C +L L LS+N G++FP N T L + ++NN F+G +
Sbjct: 483 LSHNRFHGKLPRRFLKGCYNLTILKLSHNKLSGEVFPEAANFTRLWVMSMDNNLFTGNIG 542
Query: 344 DGXXXXXXXXXXXXXNNKLSGDIPHWIGNFSVLWLLLMSENYLQGSIPVQLGNLESLEFI 403
G NNKL+G IP WIG L+ L +S N L+G IP L N+ L+ +
Sbjct: 543 KGFRSLPSLNVLDISNNKLTGVIPSWIGERQGLFALQLSNNMLEGEIPTSLFNISYLQLL 602
Query: 404 DISENGXXXXXXXXXXXXXXKHIYL-HNNAINGLIPIAXXXXXXXXXXXXXXNKFFGRIP 462
D+S N + L NN ++G+IP N+ G +P
Sbjct: 603 DLSSNRLSGDIPPHVSSIYHGAVLLLQNNNLSGVIP--DTLLLNVIVLDLRNNRLSGNLP 660
Query: 463 HQINELSNLHFLLLRGNSLQGRIPN 487
IN N+ LLLRGN+ G+IP+
Sbjct: 661 EFINT-QNISILLLRGNNFTGQIPH 684
|
|
| TAIR|locus:2101943 RLP45 "AT3G53240" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 782 (280.3 bits), Expect = 1.0e-77, P = 1.0e-77
Identities = 186/486 (38%), Positives = 266/486 (54%)
Query: 6 SLKQLKILNLGFNFFIDSI-LPYXXXXXXXXXXXXRYNKIEGSRTKQGICNLKNLLELDL 64
+L L++L+L FN F + NK GS KQGIC L+ L EL L
Sbjct: 126 NLTSLEVLDLKFNKFSGQLPTQELTNLRNLRALDLSNNKFSGSLQKQGICRLEQLQELRL 185
Query: 65 SSNNFEGHLPQCLNNLTHLKVLDISYNQLSGNFPSVLTNLTSLEYLDLSFIDFQGTFLIN 124
S N FEG +P C + + L+VLD+S N LSG P +++ S+EYL L DF+G F +
Sbjct: 186 SRNRFEGEIPLCFSRFSKLRVLDLSSNHLSGKIPYFISDFKSMEYLSLLDNDFEGLFSLG 245
Query: 125 SLANHSKLEVLVLSSGNDMLQVKTEN---WLPTYPLKVLQLSHCHLNVNSSFLLHQHHLK 181
+ ++L+V LSS + MLQ+ N L + L + LSHC+L FL +Q L+
Sbjct: 246 LITELTELKVFKLSSRSGMLQIVETNVSGGLQSQ-LSSIMLSHCNLGKIPGFLWYQQELR 304
Query: 182 FLDLSHNQLVGNFPTWLLQNNTGLEVLILWNNSFSGI-LPRLPNAKYDKLRHLDISTNNF 240
+DLS+N L G FPTWLL+NNT L+ L+L NNSF + LPR +L+ LD+S NNF
Sbjct: 305 VIDLSNNILSGVFPTWLLENNTELQALLLQNNSFKTLTLPRTMR----RLQILDLSVNNF 360
Query: 241 SGKLPENLGIVFQKLIYLDVSKNSFEGNIPYSISEMKELITLDLSRNNFSGELPRSIFSS 300
+ +LP+++G++ L +L++S N F GN+P S++ M+ + +DLS NNFSG+LPR++F+
Sbjct: 361 NNQLPKDVGLILASLRHLNLSNNEFLGNMPSSMARMENIEFMDLSYNNFSGKLPRNLFTG 420
Query: 301 CLSLETLDLSNNNFYGQLFPNFMNLTHLSSLRLNNNHFSGKMADGXXXXXXXXXXXXXNN 360
C SL L LS+N F G + + T L +L ++NN F+GK+ NN
Sbjct: 421 CYSLSWLKLSHNRFSGPIIRKSSDETSLITLIMDNNMFTGKIPRTLLNLRMLSVIDLSNN 480
Query: 361 KLSGDIPHWIGNFSVLWLLLMSENYLQGSIPVQLGNLESLEFIDISENGXXXXXXXXXXX 420
L+G IP W+GNF L +L +S N LQG+IP L N+ L +D+S N
Sbjct: 481 LLTGTIPRWLGNF-FLEVLRISNNRLQGAIPPSLFNIPYLWLLDLSGNFLSGSLPLRSSS 539
Query: 421 XXXKHIYLHNNAINGLIPIAXXXXXXXXXXXXXXNKFFGRIPHQINELSNLHFLLLRGNS 480
+ LHNN + G IP NK G IP ++ +LLR N+
Sbjct: 540 DYGYILDLHNNNLTGSIP--DTLWYGLRLLDLRNNKLSGNIP-LFRSTPSISVVLLRENN 596
Query: 481 LQGRIP 486
L G+IP
Sbjct: 597 LTGKIP 602
|
|
| TAIR|locus:2155909 RLP56 "AT5G49290" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 765 (274.4 bits), Expect = 6.3e-76, P = 6.3e-76
Identities = 189/485 (38%), Positives = 257/485 (52%)
Query: 6 SLKQLKILNLGFNFFIDSILPYXXX--XXXXXXXXXRYNKIEGSRTKQGICNLKNLLELD 63
+L L++L+L N ID +P N I S Q C +KNL ELD
Sbjct: 168 NLTNLELLDLSGNR-IDGSMPVREFPYLKKLKALDLSSNGIYSSMEWQVFCEMKNLQELD 226
Query: 64 LSSNNFEGHLPQCLNNLTHLKVLDISYNQLSGNFPSVLTNLTSLEYLDLSFIDFQGTFLI 123
L NF G LP C NL L+ LD+S NQL+GN P ++L SLEYL LS F+G F +
Sbjct: 227 LRGINFVGQLPLCFGNLNKLRFLDLSSNQLTGNIPPSFSSLESLEYLSLSDNSFEGFFSL 286
Query: 124 NSLANHSKLEVLVLSSGNDMLQVKTEN-WLPTYPLKVLQLSHCHLNVNSSFLLHQHHLKF 182
N L N +KL+V + SS +DM+QVK E+ W P + L VL L C L +FL++Q +L
Sbjct: 287 NPLTNLTKLKVFIFSSKDDMVQVKIESTWQPLFQLSVLVLRLCSLEKIPNFLMYQKNLHV 346
Query: 183 LDLSHNQLVGNFPTWLLQNNTGLEVLILWNNSFSGILPRLPNAKYDKLRHLDISTNNFSG 242
+DLS N++ G PTWLL+NN LEVL L NNSF+ + ++P + ++ L+ LD S NN G
Sbjct: 347 VDLSGNRISGIIPTWLLENNPELEVLQLKNNSFT--IFQMPTSVHN-LQVLDFSENNIGG 403
Query: 243 KLPENLGIVFQKLIYLDVSKNSFEGNIPYSISEMKELITLDLSRNNFSGELPRSIFSSCL 302
P+N G V L++++ S N F+GN P S+ EM + LDLS NN SGELP+S SSC
Sbjct: 404 LFPDNFGRVLPNLVHMNGSNNGFQGNFPSSMGEMYNISFLDLSYNNLSGELPQSFVSSCF 463
Query: 303 SLETLDLSNNNFYGQLFPNFMNLTHLSSLRLNNNHFSGKMADGXXXXXXXXXXXXXNNKL 362
SL L LS+N F G P N T L LR+NNN F+GK+ G NN L
Sbjct: 464 SLSILQLSHNKFSGHFLPRQTNFTSLIVLRINNNLFTGKIGVGLLTLVDLCILDMSNNFL 523
Query: 363 SGDIPHWIGNFSVLWLLLMSENYLQGSIPVQLGNLESLEFIDISENGXXXXXXXXXXXXX 422
G++P + F L L +S N L G++P + +L+++ F+ N
Sbjct: 524 EGELPPLLLVFEYLNFLDLSGNLLSGALPSHV-SLDNVLFL---HNNNFTGPIPDTFLGS 579
Query: 423 XKHIYLHNNAINGLIPIAXXXXXXXXXXXXXXNKFFGRIPHQINELSNLHFLLLRGNSLQ 482
+ + L NN ++G IP N G IP + E S + L L N L
Sbjct: 580 IQILDLRNNKLSGNIP-QFVDTQDISFLLLRGNSLTGYIPSTLCEFSKMRLLDLSDNKLN 638
Query: 483 GRIPN 487
G IP+
Sbjct: 639 GFIPS 643
|
|
| TAIR|locus:2040075 RLP21 "AT2G25470" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 666 (239.5 bits), Expect = 2.0e-65, P = 2.0e-65
Identities = 170/447 (38%), Positives = 227/447 (50%)
Query: 42 NKIEGSRTKQGICNLKNLLELDLSSNNFEGHLP-QCLNNLTHLKVLDISYNQLSGNFPSV 100
NK S Q + NL NL L L+ N+ +G +P + L +L+ LD+ N G P
Sbjct: 206 NKFSSSMELQELQNLINLEVLGLAQNHVDGPIPIEVFCKLKNLRDLDLKGNHFVGQIPLC 265
Query: 101 LTNLTSLEYLDLSFIDFQGTFLINSLANHSKLEVLVLSSGNDMLQVKTENWLPTYPLK-V 159
L +L L LDLS G L +S ++ LE L LS N LK V
Sbjct: 266 LGSLKKLRVLDLSSNQLSGD-LPSSFSSLESLEYLSLSDNNFDGSFSLNPLTNLTNLKFV 324
Query: 160 LQLSHCHLNVNSSFLLHQHHLKFLDLSHNQLVGNFPTWLLQNNTGLEVLILWNNSFSGIL 219
+ L C L SFLL+Q L+ +DLS N L GN PTWLL NN LEVL L NNSF+ I
Sbjct: 325 VVLRFCSLEKIPSFLLYQKKLRLVDLSSNNLSGNIPTWLLTNNPELEVLQLQNNSFT-IF 383
Query: 220 PRLPNAKYDKLRHLDISTNNFSGKLPENLGIVFQKLIYLDVSKNSFEGNIPYSISEMKEL 279
P +P ++ L+ D S NN GK P+ + L+ L+ S N F+G P SI EMK +
Sbjct: 384 P-IPTMVHN-LQIFDFSANNI-GKFPDKMDHALPNLVRLNGSNNGFQGYFPTSIGEMKNI 440
Query: 280 ITLDLSRNNFSGELPRSIFSSCLSLETLDLSNNNFYGQLFPNFMNLTHLSSLRLNNNHFS 339
LDLS NNFSG+LPRS + C+S+ L LS+N F G+ P N L LR++NN F+
Sbjct: 441 SFLDLSYNNFSGKLPRSFVTGCVSIMFLKLSHNKFSGRFLPRETNFPSLDVLRMDNNLFT 500
Query: 340 GKMADGXXXXXXXXXXXXXNNKLSGDIPHWIGNFSVLWLLLMSENYLQGSIPVQLGNLES 399
G + G NN LSG IP W+ F L +L+S N+L+G+IP L +
Sbjct: 501 GNIGGGLSNSTMLRILDMSNNGLSGAIPRWLFEFPYLDYVLISNNFLEGTIPPSLLGMPF 560
Query: 400 LEFIDISENGXXXXXXXXXXXXXXKHIYLHNNAINGLIPIAXXXXXXXXXXXXXXNKFFG 459
L F+D+S N +++LHNN G PI NK G
Sbjct: 561 LSFLDLSGNQFSGALPSHVDSELGIYMFLHNNNFTG--PIPDTLLKSVQILDLRNNKLSG 618
Query: 460 RIPHQINELSNLHFLLLRGNSLQGRIP 486
IP Q ++ +++ LLL+GN+L G IP
Sbjct: 619 SIP-QFDDTQSINILLLKGNNLTGSIP 644
|
|
| TAIR|locus:2091353 AT3G28040 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 493 (178.6 bits), Expect = 4.4e-46, P = 4.4e-46
Identities = 149/444 (33%), Positives = 215/444 (48%)
Query: 48 RTKQGICNLKNLLELDLSSNNFEGHLPQCLNNLTHLKVLDISYNQLSGNFPSVLTNLTSL 107
+ +GI L+ L L LS+NNF G++ L+N HL+ LD+S+N LSG PS L ++TSL
Sbjct: 92 KINRGIQKLQRLKVLSLSNNNFTGNI-NALSNNNHLQKLDLSHNNLSGQIPSSLGSITSL 150
Query: 108 EYLDLSFIDFQGTFLINSLANHSKLEVLVLSSGNDMLQVKTENWLPTYPLKVLQLSHCHL 167
++LDL+ F GT + N S L L LS + Q+ + + + L L LS
Sbjct: 151 QHLDLTGNSFSGTLSDDLFNNCSSLRYLSLSHNHLEGQIPSTLFRCSV-LNSLNLSRNRF 209
Query: 168 NVNSSF---LLHQHHLKFLDLSHNQLVGNFPTWLLQNNTGLEVLILWNNSFSGILPRLPN 224
+ N SF + L+ LDLS N L G+ P +L + L+ L L N FSG LP
Sbjct: 210 SGNPSFVSGIWRLERLRALDLSSNSLSGSIPLGILSLHN-LKELQLQRNQFSGALPS-DI 267
Query: 225 AKYDKLRHLDISTNNFSGKLPENLGIVFQKLIYLDVSKNSFEGNIPYSISEMKELITLDL 284
L +D+S+N+FSG+LP L + + L + DVS N G+ P I +M L+ LD
Sbjct: 268 GLCPHLNRVDLSSNHFSGELPRTLQKL-KSLNHFDVSNNLLSGDFPPWIGDMTGLVHLDF 326
Query: 285 SRNNFSGELPRSIFSSCLSLETLDLSNNNFYGQLFPNFMNLTHLSSLRLNNNHFSGKMAD 344
S N +G+LP SI S+ SL+ L+LS N G++ + + L ++L N FSG + D
Sbjct: 327 SSNELTGKLPSSI-SNLRSLKDLNLSENKLSGEVPESLESCKELMIVQLKGNDFSGNIPD 385
Query: 345 GXXXXXXXXXXXXXNNKLSGDIPHWIGN-FSVLWLLLMSENYLQGSIPVQLGNLESLEFI 403
G N L+G IP F L L +S N L GSIP ++G + ++
Sbjct: 386 GFFDLGLQEMDFSGNG-LTGSIPRGSSRLFESLIRLDLSHNSLTGSIPGEVGLFIHMRYL 444
Query: 404 DISENGXXXXXXXXXXXXXXKHIY-LHNNAINGLIPIAXXXXXXXXXXXXXXNKFFGRIP 462
++S N + L N+A+ G +P N G IP
Sbjct: 445 NLSWNHFNTRVPPEIEFLQNLTVLDLRNSALIGSVPADICESQSLQILQLDGNSLTGSIP 504
Query: 463 HQINELSNLHFLLLRGNSLQGRIP 486
I S+L L L N+L G IP
Sbjct: 505 EGIGNCSSLKLLSLSHNNLTGPIP 528
|
|
| TAIR|locus:2094603 RLP37 "receptor like protein 37" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 480 (174.0 bits), Expect = 5.6e-45, P = 5.6e-45
Identities = 137/447 (30%), Positives = 218/447 (48%)
Query: 48 RTKQGICNLKNLLELDLSSNNFEGHLPQCLNNLTHLKVLDISYNQLSGNFPSVLTNLTSL 107
++ + L++L L+LS N +G +P + NL+HL LD+S+NQL G FP + NL L
Sbjct: 103 KSSSSLFKLRHLRHLELSHCNLQGEIPSSIGNLSHLTYLDLSFNQLVGEFPVSIGNLNQL 162
Query: 108 EYLDLSFIDFQGTFLINSLANHSKLEVLVLS----SGNDMLQVKTENWLPTYPLKVLQLS 163
EY+DL +++ G + S AN +KL L L +G D++ + L ++ LS
Sbjct: 163 EYIDL-WVNALGGNIPTSFANLTKLSELHLRQNQFTGGDIVLSNLTS------LSIVDLS 215
Query: 164 HCHLNVNSSFLLHQ-HHLKFLDLSHNQLVGNFPTWLLQNNTGLEVLILWNNSFSGILPRL 222
+ N S L Q H+L+ +S N G FP++LL + +++ L N F G +
Sbjct: 216 SNYFNSTISADLSQLHNLERFWVSENSFFGPFPSFLLMIPSLVDIC-LSENQFEGPINFG 274
Query: 223 PNAKYDKLRHLDISTNNFSGKLPENLGIVFQKLIYLDVSKNSFEGNIPYSISEMKELITL 282
KL LD+S NN G +P+++ + L +L++S N+F G +P SIS++ L L
Sbjct: 275 NTTSSSKLTELDVSYNNLDGLIPKSISTLVS-LEHLELSHNNFRGQVPSSISKLVNLDGL 333
Query: 283 DLSRNNFSGELPRSIFSSCLSLETLDLSNNNFYGQLFPNFMNLTHLSSLRLNNNHFSGKM 342
LS NNF G++P SIF ++LE LDLS+N+F G++ + L +LSSL L+ N F G +
Sbjct: 334 YLSHNNFGGQVPSSIFK-LVNLEHLDLSHNDFGGRVPSSISKLVNLSSLDLSYNKFEGHV 392
Query: 343 ADGXXXXXXXXXXXXXNNKLS--GDIPHWIGNFSVLWLLLMSENYLQGSIPVQLGNLESL 400
N + G I +G+ S+ +S N LQG IP + N
Sbjct: 393 PQCIWRSSKLDSVDLSYNSFNSFGRILE-LGDESLERDWDLSSNSLQGPIPQWICNFRFF 451
Query: 401 EFIDISENGXXXXXXXXXXXXXXKHIY-LHNNAINGLIPIAXXXXXXXXXXXXXXNKFFG 459
F+D S N ++ L NN+++G +P N G
Sbjct: 452 SFLDFSNNHLNGSIPQCLKNSTDFYMLNLRNNSLSGFMPDFCMDGSMLGSLDVSLNNLVG 511
Query: 460 RIPHQINELSNLHFLLLRGNSLQGRIP 486
++P + +L +RGN ++ P
Sbjct: 512 KLPESFINCEWMEYLNVRGNKIKDTFP 538
|
|
| TAIR|locus:2156349 GSO2 "GASSHO 2" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 479 (173.7 bits), Expect = 2.3e-44, P = 2.3e-44
Identities = 147/489 (30%), Positives = 234/489 (47%)
Query: 7 LKQLKILNLGFNFFIDSILPYXXXXXXXXXXXXRYNKIEGSRTKQGICNLKNLLELDLSS 66
LK L+ LNLG N F I N+++G K+ + L NL LDLSS
Sbjct: 239 LKNLQTLNLGDNSFSGEIPSQLGDLVSIQYLNLIGNQLQGLIPKR-LTELANLQTLDLSS 297
Query: 67 NNFEGHLPQCLNNLTHLKVLDISYNQLSGNFP-SVLTNLTSLEYLDLSFIDFQGTFLINS 125
NN G + + + L+ L ++ N+LSG+ P ++ +N TSL+ L LS G +
Sbjct: 298 NNLTGVIHEEFWRMNQLEFLVLAKNRLSGSLPKTICSNNTSLKQLFLSETQLSGE-IPAE 356
Query: 126 LANHSKLEVLVLSSGNDMLQVKTENWLPTYPLKVLQLSHCHLNVNS------SFLLHQHH 179
++N L++L LS N+ L + +P ++++L++ +LN NS S + + +
Sbjct: 357 ISNCQSLKLLDLS--NNTLTGQ----IPDSLFQLVELTNLYLNNNSLEGTLSSSISNLTN 410
Query: 180 LKFLDLSHNQLVGNFPTWLLQNNTG-LEVLILWNNSFSGILPRLPNAKYDKLRHLDISTN 238
L+ L HN L G P + G LE++ L+ N FSG +P + +L+ +D N
Sbjct: 411 LQEFTLYHNNLEGKVPKEI--GFLGKLEIMYLYENRFSGEMP-VEIGNCTRLQEIDWYGN 467
Query: 239 NFSGKLPENLGIVFQKLIYLDVSKNSFEGNIPYSISEMKELITLDLSRNNFSGELPRSIF 298
SG++P ++G + + L L + +N GNIP S+ ++ +DL+ N SG +P S F
Sbjct: 468 RLSGEIPSSIGRL-KDLTRLHLRENELVGNIPASLGNCHQMTVIDLADNQLSGSIPSS-F 525
Query: 299 SSCLSLETLDLSNNNFYGQLFPNFMNLTHLSSLRLNNNHFSGKMADGXXXXXXXXXXXXX 358
+LE + NN+ G L + +NL +L+ + ++N F+G ++
Sbjct: 526 GFLTALELFMIYNNSLQGNLPDSLINLKNLTRINFSSNKFNGSISP-LCGSSSYLSFDVT 584
Query: 359 NNKLSGDIPHWIGNFSVLWLLLMSENYLQGSIPVQLGNLESLEFIDISENGXXXXXXXXX 418
N GDIP +G + L L + +N G IP G + L +DIS N
Sbjct: 585 ENGFEGDIPLELGKSTNLDRLRLGKNQFTGRIPRTFGKISELSLLDISRNSLSGIIPVEL 644
Query: 419 XX-XXXKHIYLHNNAINGLIPIAXXXXXXXXXXXXXXNKFFGRIPHQINELSNLHFLLLR 477
HI L+NN ++G+IP NKF G +P +I L+N+ L L
Sbjct: 645 GLCKKLTHIDLNNNYLSGVIPTWLGKLPLLGELKLSSNKFVGSLPTEIFSLTNILTLFLD 704
Query: 478 GNSLQGRIP 486
GNSL G IP
Sbjct: 705 GNSLNGSIP 713
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
No confident hit for EC number transfering in SWISSPROT detected by BLAST
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 487 | |||
| PLN00113 | 968 | PLN00113, PLN00113, leucine-rich repeat receptor-l | 4e-50 | |
| PLN00113 | 968 | PLN00113, PLN00113, leucine-rich repeat receptor-l | 6e-46 | |
| PLN00113 | 968 | PLN00113, PLN00113, leucine-rich repeat receptor-l | 2e-40 | |
| PLN00113 | 968 | PLN00113, PLN00113, leucine-rich repeat receptor-l | 1e-32 | |
| PLN03150 | 623 | PLN03150, PLN03150, hypothetical protein; Provisio | 4e-10 | |
| PLN03150 | 623 | PLN03150, PLN03150, hypothetical protein; Provisio | 3e-09 | |
| PLN03150 | 623 | PLN03150, PLN03150, hypothetical protein; Provisio | 6e-09 | |
| PLN03150 | 623 | PLN03150, PLN03150, hypothetical protein; Provisio | 2e-08 | |
| PLN03150 | 623 | PLN03150, PLN03150, hypothetical protein; Provisio | 1e-07 | |
| PLN03150 | 623 | PLN03150, PLN03150, hypothetical protein; Provisio | 3e-07 | |
| PLN03150 | 623 | PLN03150, PLN03150, hypothetical protein; Provisio | 3e-07 | |
| PLN03150 | 623 | PLN03150, PLN03150, hypothetical protein; Provisio | 5e-07 | |
| PLN03150 | 623 | PLN03150, PLN03150, hypothetical protein; Provisio | 1e-06 | |
| cd00116 | 319 | cd00116, LRR_RI, Leucine-rich repeats (LRRs), ribo | 6e-06 | |
| PLN03150 | 623 | PLN03150, PLN03150, hypothetical protein; Provisio | 1e-05 | |
| PLN03150 | 623 | PLN03150, PLN03150, hypothetical protein; Provisio | 2e-05 | |
| cd00116 | 319 | cd00116, LRR_RI, Leucine-rich repeats (LRRs), ribo | 2e-05 | |
| pfam13855 | 60 | pfam13855, LRR_8, Leucine rich repeat | 6e-04 | |
| cd00116 | 319 | cd00116, LRR_RI, Leucine-rich repeats (LRRs), ribo | 7e-04 | |
| cd00116 | 319 | cd00116, LRR_RI, Leucine-rich repeats (LRRs), ribo | 0.002 |
| >gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional | Back alignment and domain information |
|---|
Score = 183 bits (466), Expect = 4e-50
Identities = 157/467 (33%), Positives = 234/467 (50%), Gaps = 40/467 (8%)
Query: 1 YDSFGSLKQLKILNLGFNFFIDSILPYLNTLTSLTTLNLRYNKIEGSRTKQGICNLKNLL 60
+ GS LK+L+LG N + I L LTSL L L N++ G ++ + +K+L
Sbjct: 157 PNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRE-LGQMKSLK 215
Query: 61 ELDLSSNNFEGHLPQCLNNLTHLKVLDISYNQLSGNFPSVLTNLTSLEYLDLSFIDFQGT 120
+ L NN G +P + LT L LD+ YN L+G PS L NL +L+YL L G
Sbjct: 216 WIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGP 275
Query: 121 FLINSLANHSKLEVLVLSSGNDMLQVKTENWLP-TYPLKVLQLSHCHLNVNSSFLLHQHH 179
+ S+ + KL L LS +N L P V+QL +
Sbjct: 276 -IPPSIFSLQKLISLDLS----------DNSLSGEIPELVIQL---------------QN 309
Query: 180 LKFLDLSHNQLVGNFPTWLLQNNTGLEVLILWNNSFSGILPRLPNAKYDKLRHLDISTNN 239
L+ L L N G P L + L+VL LW+N FSG +P+ K++ L LD+STNN
Sbjct: 310 LEILHLFSNNFTGKIPV-ALTSLPRLQVLQLWSNKFSGEIPK-NLGKHNNLTVLDLSTNN 367
Query: 240 FSGKLPENL---GIVFQKLIYLDVSKNSFEGNIPYSISEMKELITLDLSRNNFSGELPRS 296
+G++PE L G +F+ +++ NS EG IP S+ + L + L N+FSGELP
Sbjct: 368 LTGEIPEGLCSSGNLFKLILF----SNSLEGEIPKSLGACRSLRRVRLQDNSFSGELPSE 423
Query: 297 IFSSCLSLETLDLSNNNFYGQLFPNFMNLTHLSSLRLNNNHFSGKMADGLLSSTLLDVLD 356
F+ + LD+SNNN G++ ++ L L L N F G + D S L+ LD
Sbjct: 424 -FTKLPLVYFLDISNNNLQGRINSRKWDMPSLQMLSLARNKFFGGLPD-SFGSKRLENLD 481
Query: 357 VSNNKLSGDIPHWIGNFSVLWLLLMSENYLQGSIPVQLGNLESLEFIDISENGLSVSM-V 415
+S N+ SG +P +G+ S L L +SEN L G IP +L + + L +D+S N LS +
Sbjct: 482 LSRNQFSGAVPRKLGSLSELMQLKLSENKLSGEIPDELSSCKKLVSLDLSHNQLSGQIPA 541
Query: 416 SLSNLSSVKHIYLHNNAINGLIPIALLRSSTLLTLDLRDNKFFGRIP 462
S S + + + L N ++G IP L +L+ +++ N G +P
Sbjct: 542 SFSEMPVLSQLDLSQNQLSGEIPKNLGNVESLVQVNISHNHLHGSLP 588
|
Length = 968 |
| >gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional | Back alignment and domain information |
|---|
Score = 171 bits (435), Expect = 6e-46
Identities = 154/486 (31%), Positives = 231/486 (47%), Gaps = 62/486 (12%)
Query: 5 GSLKQLKILNLGFNFFIDSILPYLNTLTSLTTLNLRYNKIEGSRTKQGICNLKNLLELDL 64
GS+ L+ L+L N I + + +SL L+L N + G + + NL +L L L
Sbjct: 137 GSIPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVG-KIPNSLTNLTSLEFLTL 195
Query: 65 SSNNFEGHLPQCLNNLTHLKVLDISYNQLSGNFPSVLTNLTSLEYLDLSFIDFQGTFLIN 124
+SN G +P+ L + LK + + YN LSG P + LTSL +LDL + + G + +
Sbjct: 196 ASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGP-IPS 254
Query: 125 SLANHSKLEVLVLSSGNDMLQVKTENWLPTYPLKVLQLSHCHLNVNSSFLLHQHHLKFLD 184
SL N L+ L L Q K +P S F L + L LD
Sbjct: 255 SLGNLKNLQYLFL------YQNKLSGPIP----------------PSIFSLQK--LISLD 290
Query: 185 LSHNQLVGNFPTWLLQNNTGLEVLILWNNSFSGILPR----LPNAKYDKLRHLDISTNNF 240
LS N L G P ++Q LE+L L++N+F+G +P LP +L+ L + +N F
Sbjct: 291 LSDNSLSGEIPELVIQLQN-LEILHLFSNNFTGKIPVALTSLP-----RLQVLQLWSNKF 344
Query: 241 SGKLPENLGIVFQKLIYLDVSKNSFEGNIPYSISEMKELITLDLSRNNFSGELPRSIFSS 300
SG++P+NLG L LD+S N+ G IP + L L L N+ GE+P+S+ +
Sbjct: 345 SGEIPKNLG-KHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKSL-GA 402
Query: 301 CLSLETLDLSNNNFYGQLFPNFMNLTHLSSLRLNNNHFSGKMADGLLSSTLLDVLDVSNN 360
C SL + L +N+F G+L F L + L ++NN+ G++ L +L ++ N
Sbjct: 403 CRSLRRVRLQDNSFSGELPSEFTKLPLVYFLDISNNNLQGRINSRKWDMPSLQMLSLARN 462
Query: 361 KLSGDIPHWIGNFSVLWLLLMSENYLQGSIPVQLGNLESLEFIDISENGLSVSMVSLSNL 420
K G +P G+ L L +S N G++P +LG+L L + +SEN LS
Sbjct: 463 KFFGGLPDSFGS-KRLENLDLSRNQFSGAVPRKLGSLSELMQLKLSENKLS--------- 512
Query: 421 SSVKHIYLHNNAINGLIPIALLRSSTLLTLDLRDNKFFGRIPHQINELSNLHFLLLRGNS 480
G IP L L++LDL N+ G+IP +E+ L L L N
Sbjct: 513 --------------GEIPDELSSCKKLVSLDLSHNQLSGQIPASFSEMPVLSQLDLSQNQ 558
Query: 481 LQGRIP 486
L G IP
Sbjct: 559 LSGEIP 564
|
Length = 968 |
| >gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional | Back alignment and domain information |
|---|
Score = 155 bits (392), Expect = 2e-40
Identities = 140/435 (32%), Positives = 218/435 (50%), Gaps = 33/435 (7%)
Query: 55 NLKNLLELDLSSNNFEGHLPQCLNNLTHLKVLDISYNQLSGNFP-SVLTNLTSLEYLDLS 113
N ++ +DLS N G + + L +++ +++S NQLSG P + T +SL YL+LS
Sbjct: 67 NSSRVVSIDLSGKNISGKISSAIFRLPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLS 126
Query: 114 FIDFQGTFLINSLANHSKLEVLVLSSGNDMLQVKTENWLPTYPLKVLQLSHCHLNVNSSF 173
+F G+ S+ N LE L LS N+ML + N + ++
Sbjct: 127 NNNFTGSIPRGSIPN---LETLDLS--NNMLSGEIPNDIGSF------------------ 163
Query: 174 LLHQHHLKFLDLSHNQLVGNFPTWLLQNNTGLEVLILWNNSFSGILPRLPNAKYDKLRHL 233
LK LDL N LVG P L N T LE L L +N G +PR + L+ +
Sbjct: 164 ----SSLKVLDLGGNVLVGKIPNSL-TNLTSLEFLTLASNQLVGQIPR-ELGQMKSLKWI 217
Query: 234 DISTNNFSGKLPENLGIVFQKLIYLDVSKNSFEGNIPYSISEMKELITLDLSRNNFSGEL 293
+ NN SG++P +G L +LD+ N+ G IP S+ +K L L L +N SG +
Sbjct: 218 YLGYNNLSGEIPYEIG-GLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPI 276
Query: 294 PRSIFSSCLSLETLDLSNNNFYGQLFPNFMNLTHLSSLRLNNNHFSGKMADGLLSSTLLD 353
P SIFS L +LDLS+N+ G++ + L +L L L +N+F+GK+ L S L
Sbjct: 277 PPSIFS-LQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQ 335
Query: 354 VLDVSNNKLSGDIPHWIGNFSVLWLLLMSENYLQGSIPVQLGNLESLEFIDISENGLSVS 413
VL + +NK SG+IP +G + L +L +S N L G IP L + +L + + N L
Sbjct: 336 VLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGE 395
Query: 414 M-VSLSNLSSVKHIYLHNNAINGLIPIALLRSSTLLTLDLRDNKFFGRIPHQINELSNLH 472
+ SL S++ + L +N+ +G +P + + LD+ +N GRI + ++ +L
Sbjct: 396 IPKSLGACRSLRRVRLQDNSFSGELPSEFTKLPLVYFLDISNNNLQGRINSRKWDMPSLQ 455
Query: 473 FLLLRGNSLQGRIPN 487
L L N G +P+
Sbjct: 456 MLSLARNKFFGGLPD 470
|
Length = 968 |
| >gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional | Back alignment and domain information |
|---|
Score = 131 bits (332), Expect = 1e-32
Identities = 93/263 (35%), Positives = 139/263 (52%), Gaps = 8/263 (3%)
Query: 228 DKLRHLDISTNNFSGKLPENLGIV---FQKLIYLDVSKNSFEGNIPYSISEMKELITLDL 284
D L++L S N S + GI +++ +D+S + G I +I + + T++L
Sbjct: 43 DPLKYL--SNWNSSADVCLWQGITCNNSSRVVSIDLSGKNISGKISSAIFRLPYIQTINL 100
Query: 285 SRNNFSGELPRSIFSSCLSLETLDLSNNNFYGQLFPNFMNLTHLSSLRLNNNHFSGKMAD 344
S N SG +P IF++ SL L+LSNNNF G + + L +L L+NN SG++ +
Sbjct: 101 SNNQLSGPIPDDIFTTSSSLRYLNLSNNNFTGSIPRGSIPN--LETLDLSNNMLSGEIPN 158
Query: 345 GLLSSTLLDVLDVSNNKLSGDIPHWIGNFSVLWLLLMSENYLQGSIPVQLGNLESLEFID 404
+ S + L VLD+ N L G IP+ + N + L L ++ N L G IP +LG ++SL++I
Sbjct: 159 DIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIY 218
Query: 405 ISENGLSVSM-VSLSNLSSVKHIYLHNNAINGLIPIALLRSSTLLTLDLRDNKFFGRIPH 463
+ N LS + + L+S+ H+ L N + G IP +L L L L NK G IP
Sbjct: 219 LGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPP 278
Query: 464 QINELSNLHFLLLRGNSLQGRIP 486
I L L L L NSL G IP
Sbjct: 279 SIFSLQKLISLDLSDNSLSGEIP 301
|
Length = 968 |
| >gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional | Back alignment and domain information |
|---|
Score = 61.8 bits (150), Expect = 4e-10
Identities = 32/89 (35%), Positives = 46/89 (51%)
Query: 307 LDLSNNNFYGQLFPNFMNLTHLSSLRLNNNHFSGKMADGLLSSTLLDVLDVSNNKLSGDI 366
L L N G + + L HL S+ L+ N G + L S T L+VLD+S N +G I
Sbjct: 423 LGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSI 482
Query: 367 PHWIGNFSVLWLLLMSENYLQGSIPVQLG 395
P +G + L +L ++ N L G +P LG
Sbjct: 483 PESLGQLTSLRILNLNGNSLSGRVPAALG 511
|
Length = 623 |
| >gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional | Back alignment and domain information |
|---|
Score = 59.1 bits (143), Expect = 3e-09
Identities = 30/70 (42%), Positives = 42/70 (60%)
Query: 417 LSNLSSVKHIYLHNNAINGLIPIALLRSSTLLTLDLRDNKFFGRIPHQINELSNLHFLLL 476
+S L ++ I L N+I G IP +L ++L LDL N F G IP + +L++L L L
Sbjct: 438 ISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNL 497
Query: 477 RGNSLQGRIP 486
GNSL GR+P
Sbjct: 498 NGNSLSGRVP 507
|
Length = 623 |
| >gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional | Back alignment and domain information |
|---|
Score = 58.3 bits (141), Expect = 6e-09
Identities = 34/99 (34%), Positives = 57/99 (57%), Gaps = 1/99 (1%)
Query: 344 DGLLSSTLLDVLDVSNNKLSGDIPHWIGNFSVLWLLLMSENYLQGSIPVQLGNLESLEFI 403
D +D L + N L G IP+ I L + +S N ++G+IP LG++ SLE +
Sbjct: 412 DSTKGKWFIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVL 471
Query: 404 DISENGLSVSM-VSLSNLSSVKHIYLHNNAINGLIPIAL 441
D+S N + S+ SL L+S++ + L+ N+++G +P AL
Sbjct: 472 DLSYNSFNGSIPESLGQLTSLRILNLNGNSLSGRVPAAL 510
|
Length = 623 |
| >gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional | Back alignment and domain information |
|---|
Score = 56.7 bits (137), Expect = 2e-08
Identities = 26/60 (43%), Positives = 40/60 (66%)
Query: 53 ICNLKNLLELDLSSNNFEGHLPQCLNNLTHLKVLDISYNQLSGNFPSVLTNLTSLEYLDL 112
I L++L ++LS N+ G++P L ++T L+VLD+SYN +G+ P L LTSL L+L
Sbjct: 438 ISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNL 497
|
Length = 623 |
| >gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional | Back alignment and domain information |
|---|
Score = 54.1 bits (130), Expect = 1e-07
Identities = 30/93 (32%), Positives = 55/93 (59%), Gaps = 3/93 (3%)
Query: 222 LPN--AKYDKLRHLDISTNNFSGKLPENLGIVFQKLIYLDVSKNSFEGNIPYSISEMKEL 279
+PN +K L+ +++S N+ G +P +LG + L LD+S NSF G+IP S+ ++ L
Sbjct: 434 IPNDISKLRHLQSINLSGNSIRGNIPPSLGSI-TSLEVLDLSYNSFNGSIPESLGQLTSL 492
Query: 280 ITLDLSRNNFSGELPRSIFSSCLSLETLDLSNN 312
L+L+ N+ SG +P ++ L + + ++N
Sbjct: 493 RILNLNGNSLSGRVPAALGGRLLHRASFNFTDN 525
|
Length = 623 |
| >gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional | Back alignment and domain information |
|---|
Score = 52.9 bits (127), Expect = 3e-07
Identities = 29/90 (32%), Positives = 49/90 (54%), Gaps = 1/90 (1%)
Query: 282 LDLSRNNFSGELPRSIFSSCLSLETLDLSNNNFYGQLFPNFMNLTHLSSLRLNNNHFSGK 341
L L G +P I S L++++LS N+ G + P+ ++T L L L+ N F+G
Sbjct: 423 LGLDNQGLRGFIPNDI-SKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGS 481
Query: 342 MADGLLSSTLLDVLDVSNNKLSGDIPHWIG 371
+ + L T L +L+++ N LSG +P +G
Sbjct: 482 IPESLGQLTSLRILNLNGNSLSGRVPAALG 511
|
Length = 623 |
| >gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional | Back alignment and domain information |
|---|
Score = 52.5 bits (126), Expect = 3e-07
Identities = 27/84 (32%), Positives = 46/84 (54%)
Query: 328 LSSLRLNNNHFSGKMADGLLSSTLLDVLDVSNNKLSGDIPHWIGNFSVLWLLLMSENYLQ 387
+ L L+N G + + + L +++S N + G+IP +G+ + L +L +S N
Sbjct: 420 IDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFN 479
Query: 388 GSIPVQLGNLESLEFIDISENGLS 411
GSIP LG L SL ++++ N LS
Sbjct: 480 GSIPESLGQLTSLRILNLNGNSLS 503
|
Length = 623 |
| >gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional | Back alignment and domain information |
|---|
Score = 52.1 bits (125), Expect = 5e-07
Identities = 28/86 (32%), Positives = 47/86 (54%), Gaps = 2/86 (2%)
Query: 233 LDISTNNFSGKLPENLGIVFQKLIYLDVSKNSFEGNIPYSISEMKELITLDLSRNNFSGE 292
L + G +P ++ + L +++S NS GNIP S+ + L LDLS N+F+G
Sbjct: 423 LGLDNQGLRGFIPNDIS-KLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGS 481
Query: 293 LPRSIFSSCLSLETLDLSNNNFYGQL 318
+P S+ SL L+L+ N+ G++
Sbjct: 482 IPESL-GQLTSLRILNLNGNSLSGRV 506
|
Length = 623 |
| >gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional | Back alignment and domain information |
|---|
Score = 50.6 bits (121), Expect = 1e-06
Identities = 32/88 (36%), Positives = 49/88 (55%), Gaps = 4/88 (4%)
Query: 14 NLGFNFFIDSILPYLNTLTSLTTLNLRYNKIEGSRTKQGICNLKNLLELDLSSNNFEGHL 73
N G FI + + L L S+ NL N I G+ + ++ +L LDLS N+F G +
Sbjct: 427 NQGLRGFIPNDISKLRHLQSI---NLSGNSIRGN-IPPSLGSITSLEVLDLSYNSFNGSI 482
Query: 74 PQCLNNLTHLKVLDISYNQLSGNFPSVL 101
P+ L LT L++L+++ N LSG P+ L
Sbjct: 483 PESLGQLTSLRILNLNGNSLSGRVPAAL 510
|
Length = 623 |
| >gnl|CDD|238064 cd00116, LRR_RI, Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily | Back alignment and domain information |
|---|
Score = 47.7 bits (114), Expect = 6e-06
Identities = 78/323 (24%), Positives = 125/323 (38%), Gaps = 49/323 (15%)
Query: 36 TLNLRYNKIEGSRTKQGICNLKNLLELDLSSNNF-EGHLPQCLNNLTH---LKVLDISYN 91
L+L+ ++ R + + L L L L N E + L LK L +S N
Sbjct: 2 QLSLKGELLKTERATELLPKLLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLN 61
Query: 92 QLSGNFPSV------LTNLTSLEYLDLS--FIDFQGTFLINSLANHSKLEVLVLSS---G 140
+ + LT L+ LDLS + G ++ SL S L+ L L++ G
Sbjct: 62 ETGRIPRGLQSLLQGLTKGCGLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLG 121
Query: 141 NDMLQVKTENWLPTYP-LKVLQLSHCHLNVNSSF-----LLHQHHLKFLDLSHNQLVGNF 194
+ L++ + P L+ L L L S L LK L+L++N +
Sbjct: 122 DRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGDAG 181
Query: 195 PTWLLQ---NNTGLEVLILWNNSF--------SGILPRLPNAKYDKLRHLDISTNNFSG- 242
L + N LEVL L NN + L L + L L++ NN +
Sbjct: 182 IRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKS-----LEVLNLGDNNLTDA 236
Query: 243 ---KLPENLGIVFQKLIYLDVSKNSFE----GNIPYSISEMKELITLDLSRNNFSGELPR 295
L L L+ L +S N ++ ++E + L+ LDL N F E +
Sbjct: 237 GAAALASALLSPNISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGNKFGEEGAQ 296
Query: 296 SIFSSCL----SLETLDLSNNNF 314
+ S L LE+L + +++F
Sbjct: 297 LLAESLLEPGNELESLWVKDDSF 319
|
LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1). Length = 319 |
| >gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional | Back alignment and domain information |
|---|
Score = 47.5 bits (113), Expect = 1e-05
Identities = 29/72 (40%), Positives = 43/72 (59%), Gaps = 2/72 (2%)
Query: 178 HHLKFLDLSHNQLVGNFPTWLLQNNTGLEVLILWNNSFSGILPRLPNAKYDKLRHLDIST 237
HL+ ++LS N + GN P L + T LEVL L NSF+G +P + LR L+++
Sbjct: 442 RHLQSINLSGNSIRGNIPP-SLGSITSLEVLDLSYNSFNGSIPE-SLGQLTSLRILNLNG 499
Query: 238 NNFSGKLPENLG 249
N+ SG++P LG
Sbjct: 500 NSLSGRVPAALG 511
|
Length = 623 |
| >gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional | Back alignment and domain information |
|---|
Score = 47.1 bits (112), Expect = 2e-05
Identities = 30/80 (37%), Positives = 47/80 (58%), Gaps = 2/80 (2%)
Query: 62 LDLSSNNFEGHLPQCLNNLTHLKVLDISYNQLSGNFPSVLTNLTSLEYLDLSFIDFQGTF 121
L L + G +P ++ L HL+ +++S N + GN P L ++TSLE LDLS+ F G+
Sbjct: 423 LGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGS- 481
Query: 122 LINSLANHSKLEVLVLSSGN 141
+ SL + L +L L +GN
Sbjct: 482 IPESLGQLTSLRILNL-NGN 500
|
Length = 623 |
| >gnl|CDD|238064 cd00116, LRR_RI, Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily | Back alignment and domain information |
|---|
Score = 46.2 bits (110), Expect = 2e-05
Identities = 53/230 (23%), Positives = 82/230 (35%), Gaps = 43/230 (18%)
Query: 157 LKVLQLSHCHLNVN-----SSFLLHQHHLKFLDLSHNQLVGNFPTWL-----LQNNTGLE 206
L+VL+L L +S L Q LK L LS N+ L GL+
Sbjct: 25 LQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQ 84
Query: 207 VLILWNNSFSGILPRLPNA--KYDKLRHLDISTNNFSGKLPENLGIVFQKLIYLDVSKNS 264
L L +N+ + + + L+ L + NN G L K + + K
Sbjct: 85 ELDLSDNALGPDGCGVLESLLRSSSLQELKL-NNNGLGDRGLRLLAKGLKDLPPALEK-- 141
Query: 265 FEGNIPYSISEMKELITLDLSRNNFSGELPRSI---FSSCLSLETLDLSNNNFYGQ---- 317
L L RN G ++ + L+ L+L+NN
Sbjct: 142 -----------------LVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGDAGIRA 184
Query: 318 LFPNFMNLTHLSSLRLNNNHF----SGKMADGLLSSTLLDVLDVSNNKLS 363
L +L L LNNN + +A+ L S L+VL++ +N L+
Sbjct: 185 LAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLT 234
|
LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1). Length = 319 |
| >gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat | Back alignment and domain information |
|---|
Score = 37.5 bits (88), Expect = 6e-04
Identities = 24/56 (42%), Positives = 29/56 (51%)
Query: 58 NLLELDLSSNNFEGHLPQCLNNLTHLKVLDISYNQLSGNFPSVLTNLTSLEYLDLS 113
NL LDLS+N L +LKVLD+S N L+ P + L SL LDLS
Sbjct: 1 NLKSLDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLS 56
|
Length = 60 |
| >gnl|CDD|238064 cd00116, LRR_RI, Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily | Back alignment and domain information |
|---|
Score = 41.2 bits (97), Expect = 7e-04
Identities = 44/203 (21%), Positives = 73/203 (35%), Gaps = 44/203 (21%)
Query: 277 KELITLDLSRNNFSGELPRSI------FSSCLSLETLDLSNNNFYGQLFPNFMNLTHLSS 330
L L LS N +G +PR + + L+ LDLS+N +L SS
Sbjct: 51 PSLKELCLS-LNETGRIPRGLQSLLQGLTKGCGLQELDLSDNALGPDGCGVLESLLRSSS 109
Query: 331 LR---LNNNHFSG----KMADGLLSSTL-LDVLDVSNNKLSGDIPHWIGNFSVLWLLLMS 382
L+ LNNN +A GL L+ L + N+L G +
Sbjct: 110 LQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGAS-------CEALAKALR 162
Query: 383 ENYLQGSIPVQLGNLESLEFIDISENGLSVS-----MVSLSNLSSVKHIYLHNNAIN--- 434
N L+ ++++ NG+ + L +++ + L+NN +
Sbjct: 163 AN-------------RDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEG 209
Query: 435 -GLIPIALLRSSTLLTLDLRDNK 456
+ L +L L+L DN
Sbjct: 210 ASALAETLASLKSLEVLNLGDNN 232
|
LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1). Length = 319 |
| >gnl|CDD|238064 cd00116, LRR_RI, Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily | Back alignment and domain information |
|---|
Score = 40.0 bits (94), Expect = 0.002
Identities = 71/285 (24%), Positives = 105/285 (36%), Gaps = 51/285 (17%)
Query: 205 LEVLILWNNSFSGI-LPRLPNAK--YDKLRHLDISTNNFSGKLPENLGIVFQ------KL 255
L+VL L N+ L +A L+ L +S N +G++P L + Q L
Sbjct: 25 LQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLN-ETGRIPRGLQSLLQGLTKGCGL 83
Query: 256 IYLDVSKNSFEGNIP---YSISEMKELITLDLSRNNFSGE----LPRSIFSSCLSLETLD 308
LD+S N+ + S+ L L L+ N L + + +LE L
Sbjct: 84 QELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLV 143
Query: 309 LSNNNFYGQ----LFPNFMNLTHLSSLRLNNNHFSG----KMADGLLSSTLLDVLDVSNN 360
L N G L L L L NN +A+GL ++ L+VLD++NN
Sbjct: 144 LGRNRLEGASCEALAKALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNN 203
Query: 361 KLSGDIPHWIGNFSVLWLLLMSENYLQ-GSIPVQLGNLESLEFID--ISENGLS-VSMVS 416
L E L +LE L D +++ G + ++
Sbjct: 204 GL------------------TDEGASALAETLASLKSLEVLNLGDNNLTDAGAAALASAL 245
Query: 417 LSNLSSVKHIYLHNNAINGLIPIALLR----SSTLLTLDLRDNKF 457
LS S+ + L N I L +LL LDLR NKF
Sbjct: 246 LSPNISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGNKF 290
|
LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1). Length = 319 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 487 | |||
| PLN00113 | 968 | leucine-rich repeat receptor-like protein kinase; | 100.0 | |
| PLN00113 | 968 | leucine-rich repeat receptor-like protein kinase; | 100.0 | |
| KOG4194 | 873 | consensus Membrane glycoprotein LIG-1 [Signal tran | 100.0 | |
| KOG4194 | 873 | consensus Membrane glycoprotein LIG-1 [Signal tran | 100.0 | |
| KOG0472 | 565 | consensus Leucine-rich repeat protein [Function un | 99.97 | |
| KOG0618 | 1081 | consensus Serine/threonine phosphatase 2C containi | 99.95 | |
| KOG0618 | 1081 | consensus Serine/threonine phosphatase 2C containi | 99.95 | |
| KOG0444 | 1255 | consensus Cytoskeletal regulator Flightless-I (con | 99.95 | |
| KOG0444 | 1255 | consensus Cytoskeletal regulator Flightless-I (con | 99.94 | |
| KOG0472 | 565 | consensus Leucine-rich repeat protein [Function un | 99.94 | |
| PLN03210 | 1153 | Resistant to P. syringae 6; Provisional | 99.9 | |
| PLN03210 | 1153 | Resistant to P. syringae 6; Provisional | 99.88 | |
| KOG4237 | 498 | consensus Extracellular matrix protein slit, conta | 99.87 | |
| KOG4237 | 498 | consensus Extracellular matrix protein slit, conta | 99.83 | |
| PRK15387 | 788 | E3 ubiquitin-protein ligase SspH2; Provisional | 99.8 | |
| PRK15387 | 788 | E3 ubiquitin-protein ligase SspH2; Provisional | 99.75 | |
| PRK15370 | 754 | E3 ubiquitin-protein ligase SlrP; Provisional | 99.72 | |
| cd00116 | 319 | LRR_RI Leucine-rich repeats (LRRs), ribonuclease i | 99.72 | |
| cd00116 | 319 | LRR_RI Leucine-rich repeats (LRRs), ribonuclease i | 99.71 | |
| PRK15370 | 754 | E3 ubiquitin-protein ligase SlrP; Provisional | 99.69 | |
| KOG0617 | 264 | consensus Ras suppressor protein (contains leucine | 99.5 | |
| KOG0617 | 264 | consensus Ras suppressor protein (contains leucine | 99.38 | |
| KOG1909 | 382 | consensus Ran GTPase-activating protein [RNA proce | 99.27 | |
| KOG3207 | 505 | consensus Beta-tubulin folding cofactor E [Posttra | 99.2 | |
| KOG1259 | 490 | consensus Nischarin, modulator of integrin alpha5 | 99.2 | |
| KOG3207 | 505 | consensus Beta-tubulin folding cofactor E [Posttra | 99.17 | |
| PF14580 | 175 | LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ | 99.14 | |
| PF14580 | 175 | LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ | 99.12 | |
| KOG1909 | 382 | consensus Ran GTPase-activating protein [RNA proce | 99.12 | |
| KOG0532 | 722 | consensus Leucine-rich repeat (LRR) protein, conta | 99.08 | |
| COG4886 | 394 | Leucine-rich repeat (LRR) protein [Function unknow | 99.0 | |
| COG4886 | 394 | Leucine-rich repeat (LRR) protein [Function unknow | 98.99 | |
| PF13855 | 61 | LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF | 98.99 | |
| KOG1259 | 490 | consensus Nischarin, modulator of integrin alpha5 | 98.96 | |
| KOG2120 | 419 | consensus SCF ubiquitin ligase, Skp2 component [Po | 98.95 | |
| KOG4341 | 483 | consensus F-box protein containing LRR [General fu | 98.94 | |
| KOG4341 | 483 | consensus F-box protein containing LRR [General fu | 98.9 | |
| KOG4658 | 889 | consensus Apoptotic ATPase [Signal transduction me | 98.9 | |
| PLN03150 | 623 | hypothetical protein; Provisional | 98.8 | |
| KOG4658 | 889 | consensus Apoptotic ATPase [Signal transduction me | 98.75 | |
| KOG2120 | 419 | consensus SCF ubiquitin ligase, Skp2 component [Po | 98.75 | |
| KOG0532 | 722 | consensus Leucine-rich repeat (LRR) protein, conta | 98.7 | |
| PF13855 | 61 | LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF | 98.7 | |
| KOG0531 | 414 | consensus Protein phosphatase 1, regulatory subuni | 98.68 | |
| KOG1859 | 1096 | consensus Leucine-rich repeat proteins [General fu | 98.6 | |
| PLN03150 | 623 | hypothetical protein; Provisional | 98.59 | |
| KOG0531 | 414 | consensus Protein phosphatase 1, regulatory subuni | 98.5 | |
| KOG2982 | 418 | consensus Uncharacterized conserved protein [Funct | 98.46 | |
| KOG2982 | 418 | consensus Uncharacterized conserved protein [Funct | 98.37 | |
| COG5238 | 388 | RNA1 Ran GTPase-activating protein (RanGAP) involv | 98.3 | |
| COG5238 | 388 | RNA1 Ran GTPase-activating protein (RanGAP) involv | 98.29 | |
| KOG1859 | 1096 | consensus Leucine-rich repeat proteins [General fu | 98.15 | |
| KOG3665 | 699 | consensus ZYG-1-like serine/threonine protein kina | 98.14 | |
| KOG3665 | 699 | consensus ZYG-1-like serine/threonine protein kina | 98.13 | |
| PF13306 | 129 | LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_ | 98.09 | |
| PF13306 | 129 | LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_ | 98.05 | |
| KOG1644 | 233 | consensus U2-associated snRNP A' protein [RNA proc | 97.96 | |
| KOG1644 | 233 | consensus U2-associated snRNP A' protein [RNA proc | 97.91 | |
| KOG4579 | 177 | consensus Leucine-rich repeat (LRR) protein associ | 97.9 | |
| KOG1947 | 482 | consensus Leucine rich repeat proteins, some prote | 97.8 | |
| PF12799 | 44 | LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_ | 97.76 | |
| KOG1947 | 482 | consensus Leucine rich repeat proteins, some prote | 97.74 | |
| PRK15386 | 426 | type III secretion protein GogB; Provisional | 97.72 | |
| PF12799 | 44 | LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_ | 97.68 | |
| KOG4579 | 177 | consensus Leucine-rich repeat (LRR) protein associ | 97.68 | |
| PRK15386 | 426 | type III secretion protein GogB; Provisional | 97.63 | |
| KOG2739 | 260 | consensus Leucine-rich acidic nuclear protein [Cel | 97.45 | |
| KOG2123 | 388 | consensus Uncharacterized conserved protein [Funct | 97.44 | |
| KOG2123 | 388 | consensus Uncharacterized conserved protein [Funct | 97.41 | |
| KOG2739 | 260 | consensus Leucine-rich acidic nuclear protein [Cel | 97.0 | |
| KOG3864 | 221 | consensus Uncharacterized conserved protein [Funct | 95.41 | |
| KOG3864 | 221 | consensus Uncharacterized conserved protein [Funct | 95.16 | |
| PF00560 | 22 | LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le | 94.89 | |
| PF13504 | 17 | LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OO | 94.38 | |
| PF00560 | 22 | LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le | 94.27 | |
| KOG4308 | 478 | consensus LRR-containing protein [Function unknown | 93.85 | |
| KOG4308 | 478 | consensus LRR-containing protein [Function unknown | 92.24 | |
| PF13516 | 24 | LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RI | 89.9 | |
| smart00369 | 26 | LRR_TYP Leucine-rich repeats, typical (most popula | 89.48 | |
| smart00370 | 26 | LRR Leucine-rich repeats, outliers. | 89.48 | |
| smart00369 | 26 | LRR_TYP Leucine-rich repeats, typical (most popula | 87.91 | |
| smart00370 | 26 | LRR Leucine-rich repeats, outliers. | 87.91 | |
| smart00364 | 26 | LRR_BAC Leucine-rich repeats, bacterial type. | 85.15 |
| >PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-47 Score=404.29 Aligned_cols=476 Identities=31% Similarity=0.439 Sum_probs=317.4
Q ss_pred cccccccccEEecCCccccccccccc-cCCCCCcEEEccCccccCCcccccccCCCCCcEEECCCCccCCCcchhccCCC
Q 036411 3 SFGSLKQLKILNLGFNFFIDSILPYL-NTLTSLTTLNLRYNKIEGSRTKQGICNLKNLLELDLSSNNFEGHLPQCLNNLT 81 (487)
Q Consensus 3 ~~~~~~~L~~L~l~~~~~~~~~~~~~-~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~ 81 (487)
+|..+++|+.|++++|.+.+.+|..+ ..+++|++|++++|.+.+..+ ...+++|++|++++|.+....|..+.+++
T Consensus 88 ~~~~l~~L~~L~Ls~n~~~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p---~~~l~~L~~L~Ls~n~~~~~~p~~~~~l~ 164 (968)
T PLN00113 88 AIFRLPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNNNFTGSIP---RGSIPNLETLDLSNNMLSGEIPNDIGSFS 164 (968)
T ss_pred HHhCCCCCCEEECCCCccCCcCChHHhccCCCCCEEECcCCccccccC---ccccCCCCEEECcCCcccccCChHHhcCC
Confidence 46788899999999988876666544 478888888888888764433 24567777777777777666677777777
Q ss_pred CccEEeccCccccCCccccccCCCCCcEEeccccccCcchhHHHhhccccceEEEeccCCCccccccccccCCCCCceee
Q 036411 82 HLKVLDISYNQLSGNFPSVLTNLTSLEYLDLSFIDFQGTFLINSLANHSKLEVLVLSSGNDMLQVKTENWLPTYPLKVLQ 161 (487)
Q Consensus 82 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~ 161 (487)
+|++|++++|.+....|..+.++++|++|++++|.+.+. .+..+..+++|+.++++.+.... ..+..+..+++|++|+
T Consensus 165 ~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~-~p~~l~~l~~L~~L~L~~n~l~~-~~p~~l~~l~~L~~L~ 242 (968)
T PLN00113 165 SLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQ-IPRELGQMKSLKWIYLGYNNLSG-EIPYEIGGLTSLNHLD 242 (968)
T ss_pred CCCEEECccCcccccCChhhhhCcCCCeeeccCCCCcCc-CChHHcCcCCccEEECcCCccCC-cCChhHhcCCCCCEEE
Confidence 777777777776666666777777777777777766533 33456667777777765543222 2223345556666666
Q ss_pred cccccc-cccccccccCCcccEEeCCCCcccCCcchHhhhcCCCCcEEEcccCCCCCCCCCCCCcCCCCCcEEEccCCcc
Q 036411 162 LSHCHL-NVNSSFLLHQHHLKFLDLSHNQLVGNFPTWLLQNNTGLEVLILWNNSFSGILPRLPNAKYDKLRHLDISTNNF 240 (487)
Q Consensus 162 l~~~~~-~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 240 (487)
+.+|.+ ...+..+..+++|+.|++++|.+.+..+..+ ..+++|+.|++++|.+....+. .+..+++|+.|++.+|.+
T Consensus 243 L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l-~~l~~L~~L~Ls~n~l~~~~p~-~~~~l~~L~~L~l~~n~~ 320 (968)
T PLN00113 243 LVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSI-FSLQKLISLDLSDNSLSGEIPE-LVIQLQNLEILHLFSNNF 320 (968)
T ss_pred CcCceeccccChhHhCCCCCCEEECcCCeeeccCchhH-hhccCcCEEECcCCeeccCCCh-hHcCCCCCcEEECCCCcc
Confidence 666665 3455556666666666666666654444443 2556666666666655433332 224455556666655555
Q ss_pred cccCCcccccccCceEEEEccCCCCCCCcchhhhccccCcEEecccccCCCCCchh-----------------------h
Q 036411 241 SGKLPENLGIVFQKLIYLDVSKNSFEGNIPYSISEMKELITLDLSRNNFSGELPRS-----------------------I 297 (487)
Q Consensus 241 ~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~-----------------------~ 297 (487)
.+..+..+.. +++|+.|++++|.+.+..+..+..+++|+.|++++|.+.+.+|.. .
T Consensus 321 ~~~~~~~~~~-l~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~p~~ 399 (968)
T PLN00113 321 TGKIPVALTS-LPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKS 399 (968)
T ss_pred CCcCChhHhc-CCCCCEEECcCCCCcCcCChHHhCCCCCcEEECCCCeeEeeCChhHhCcCCCCEEECcCCEecccCCHH
Confidence 5444433322 345555555555555444444555555555555555444333322 1
Q ss_pred hcCCCCCcEEECCCCccCCCCCcCCcCCCCccEEEcCCCcccccccccccCCCcccEEEccCCccCCCchhhhccccccc
Q 036411 298 FSSCLSLETLDLSNNNFYGQLFPNFMNLTHLSSLRLNNNHFSGKMADGLLSSTLLDVLDVSNNKLSGDIPHWIGNFSVLW 377 (487)
Q Consensus 298 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~ 377 (487)
+..+++|+.|++.+|.+.+..+..+..++.|+.|++++|.+.+..+..+..+++|+.|++++|++.+..|..+ ..++|+
T Consensus 400 ~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~~-~~~~L~ 478 (968)
T PLN00113 400 LGACRSLRRVRLQDNSFSGELPSEFTKLPLVYFLDISNNNLQGRINSRKWDMPSLQMLSLARNKFFGGLPDSF-GSKRLE 478 (968)
T ss_pred HhCCCCCCEEECcCCEeeeECChhHhcCCCCCEEECcCCcccCccChhhccCCCCcEEECcCceeeeecCccc-ccccce
Confidence 3445566666666666555555555566666666666666655555555566667777777776665555544 346778
Q ss_pred EEecCCccccCcchhhhccCcCCcEEeccCCccc-cccccccCCCcceEEEeeCcccCCcchHhhhccCcceEEeCCCCc
Q 036411 378 LLLMSENYLQGSIPVQLGNLESLEFIDISENGLS-VSMVSLSNLSSVKHIYLHNNAINGLIPIALLRSSTLLTLDLRDNK 456 (487)
Q Consensus 378 ~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~-~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 456 (487)
.|++++|.+.+..|..+..+++|+.|++++|.+. ..+..+..+++|++|++++|.+++..|..+..+++|+.|++++|+
T Consensus 479 ~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~ 558 (968)
T PLN00113 479 NLDLSRNQFSGAVPRKLGSLSELMQLKLSENKLSGEIPDELSSCKKLVSLDLSHNQLSGQIPASFSEMPVLSQLDLSQNQ 558 (968)
T ss_pred EEECcCCccCCccChhhhhhhccCEEECcCCcceeeCChHHcCccCCCEEECCCCcccccCChhHhCcccCCEEECCCCc
Confidence 8888888887777888888889999999999885 455667788999999999999998888889999999999999999
Q ss_pred ccccCcccccccCceeEEeccCCccCCCCCC
Q 036411 457 FFGRIPHQINELSNLHFLLLRGNSLQGRIPN 487 (487)
Q Consensus 457 ~~~~~~~~l~~l~~L~~L~l~~~~~~~~~p~ 487 (487)
+++.+|..+..+++|+.|++++|++.+.+|+
T Consensus 559 l~~~~p~~l~~l~~L~~l~ls~N~l~~~~p~ 589 (968)
T PLN00113 559 LSGEIPKNLGNVESLVQVNISHNHLHGSLPS 589 (968)
T ss_pred ccccCChhHhcCcccCEEeccCCcceeeCCC
Confidence 9888999999999999999999999998884
|
|
| >PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-47 Score=403.87 Aligned_cols=473 Identities=31% Similarity=0.440 Sum_probs=371.0
Q ss_pred cccccEEecCCccccccccccccCCCCCcEEEccCccccCCcccccccCCCCCcEEECCCCccCCCcchhccCCCCccEE
Q 036411 7 LKQLKILNLGFNFFIDSILPYLNTLTSLTTLNLRYNKIEGSRTKQGICNLKNLLELDLSSNNFEGHLPQCLNNLTHLKVL 86 (487)
Q Consensus 7 ~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L 86 (487)
..+++.|+++++.+.+..+..+..+++|+.|++++|.+.+..+.+.+.++++|++|++++|.+....|. ..+++|++|
T Consensus 68 ~~~v~~L~L~~~~i~~~~~~~~~~l~~L~~L~Ls~n~~~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~--~~l~~L~~L 145 (968)
T PLN00113 68 SSRVVSIDLSGKNISGKISSAIFRLPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNNNFTGSIPR--GSIPNLETL 145 (968)
T ss_pred CCcEEEEEecCCCccccCChHHhCCCCCCEEECCCCccCCcCChHHhccCCCCCEEECcCCccccccCc--cccCCCCEE
Confidence 357999999999888888889999999999999999987666666677999999999999999766664 568999999
Q ss_pred eccCccccCCccccccCCCCCcEEeccccccCcchhHHHhhccccceEEEeccCCCccccccccccCCCCCceeeccccc
Q 036411 87 DISYNQLSGNFPSVLTNLTSLEYLDLSFIDFQGTFLINSLANHSKLEVLVLSSGNDMLQVKTENWLPTYPLKVLQLSHCH 166 (487)
Q Consensus 87 ~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 166 (487)
++++|.+....|..+..+++|++|++++|.+.+. .+..+..+++|++|+++++.... ..+..+..+++|+.|++.+|.
T Consensus 146 ~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~-~p~~~~~l~~L~~L~L~~n~l~~-~~p~~l~~l~~L~~L~L~~n~ 223 (968)
T PLN00113 146 DLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGK-IPNSLTNLTSLEFLTLASNQLVG-QIPRELGQMKSLKWIYLGYNN 223 (968)
T ss_pred ECcCCcccccCChHHhcCCCCCEEECccCccccc-CChhhhhCcCCCeeeccCCCCcC-cCChHHcCcCCccEEECcCCc
Confidence 9999999878889999999999999999987643 44578899999999998765433 334456778899999999998
Q ss_pred c-cccccccccCCcccEEeCCCCcccCCcchHhhhcCCCCcEEEcccCCCCCCCCCCCCcCCCCCcEEEccCCcccccCC
Q 036411 167 L-NVNSSFLLHQHHLKFLDLSHNQLVGNFPTWLLQNNTGLEVLILWNNSFSGILPRLPNAKYDKLRHLDISTNNFSGKLP 245 (487)
Q Consensus 167 ~-~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~ 245 (487)
+ ...+..+..+++|+.|++++|.+.+..+.. +..+++|+.|.+++|.+....+. .+..+++|+.|++++|.+.+..|
T Consensus 224 l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~-l~~l~~L~~L~L~~n~l~~~~p~-~l~~l~~L~~L~Ls~n~l~~~~p 301 (968)
T PLN00113 224 LSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSS-LGNLKNLQYLFLYQNKLSGPIPP-SIFSLQKLISLDLSDNSLSGEIP 301 (968)
T ss_pred cCCcCChhHhcCCCCCEEECcCceeccccChh-HhCCCCCCEEECcCCeeeccCch-hHhhccCcCEEECcCCeeccCCC
Confidence 8 467778899999999999999998777665 45899999999999987755444 34678999999999999886766
Q ss_pred cccccccCceEEEEccCCCCCCCcchhhhccccCcEEecccccCCCCCchhhhcCCCCCcEEECCCCccCCCCCcCCcCC
Q 036411 246 ENLGIVFQKLIYLDVSKNSFEGNIPYSISEMKELITLDLSRNNFSGELPRSIFSSCLSLETLDLSNNNFYGQLFPNFMNL 325 (487)
Q Consensus 246 ~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~ 325 (487)
..+. .+++|+.|++++|.+.+..+..+..+++|+.|++++|.+.+.+|.. +..+++|+.|++++|.+.+..+..+..+
T Consensus 302 ~~~~-~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~-l~~~~~L~~L~Ls~n~l~~~~p~~~~~~ 379 (968)
T PLN00113 302 ELVI-QLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKN-LGKHNNLTVLDLSTNNLTGEIPEGLCSS 379 (968)
T ss_pred hhHc-CCCCCcEEECCCCccCCcCChhHhcCCCCCEEECcCCCCcCcCChH-HhCCCCCcEEECCCCeeEeeCChhHhCc
Confidence 6554 3589999999999998888888999999999999999998777765 5778999999999998876666666667
Q ss_pred CCccEEEcCCCcccccccccccCCCcccEEEccCCccCCCchhhhcccccccEEecCCccccCcchhhhccCcCCcEEec
Q 036411 326 THLSSLRLNNNHFSGKMADGLLSSTLLDVLDVSNNKLSGDIPHWIGNFSVLWLLLMSENYLQGSIPVQLGNLESLEFIDI 405 (487)
Q Consensus 326 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l 405 (487)
++|+.|++.+|.+.+..+..+..+++|+.|++++|++++..|..+..+++|+.+++++|.+.+..+..+..+++|+.|++
T Consensus 380 ~~L~~L~l~~n~l~~~~p~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L 459 (968)
T PLN00113 380 GNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGELPSEFTKLPLVYFLDISNNNLQGRINSRKWDMPSLQMLSL 459 (968)
T ss_pred CCCCEEECcCCEecccCCHHHhCCCCCCEEECcCCEeeeECChhHhcCCCCCEEECcCCcccCccChhhccCCCCcEEEC
Confidence 77777777777776666666666677777777777666666666666666666666666666555554445555555555
Q ss_pred cCC-----------------------ccc-cccccccCCCcceEEEeeCcccCCcchHhhhccCcceEEeCCCCcccccC
Q 036411 406 SEN-----------------------GLS-VSMVSLSNLSSVKHIYLHNNAINGLIPIALLRSSTLLTLDLRDNKFFGRI 461 (487)
Q Consensus 406 ~~~-----------------------~~~-~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~ 461 (487)
++| ++. ..+..+..+++|+.|++++|.+.+..|..+..+++|+.|++++|.+++.+
T Consensus 460 ~~n~~~~~~p~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~ 539 (968)
T PLN00113 460 ARNKFFGGLPDSFGSKRLENLDLSRNQFSGAVPRKLGSLSELMQLKLSENKLSGEIPDELSSCKKLVSLDLSHNQLSGQI 539 (968)
T ss_pred cCceeeeecCcccccccceEEECcCCccCCccChhhhhhhccCEEECcCCcceeeCChHHcCccCCCEEECCCCcccccC
Confidence 554 443 22233445666777777777776666667777777777777777777777
Q ss_pred cccccccCceeEEeccCCccCCCCCC
Q 036411 462 PHQINELSNLHFLLLRGNSLQGRIPN 487 (487)
Q Consensus 462 ~~~l~~l~~L~~L~l~~~~~~~~~p~ 487 (487)
|..+..+++|+.|++++|++.+.+|+
T Consensus 540 p~~~~~l~~L~~L~Ls~N~l~~~~p~ 565 (968)
T PLN00113 540 PASFSEMPVLSQLDLSQNQLSGEIPK 565 (968)
T ss_pred ChhHhCcccCCEEECCCCcccccCCh
Confidence 77777777777777777777777763
|
|
| >KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5e-36 Score=271.47 Aligned_cols=365 Identities=24% Similarity=0.259 Sum_probs=269.2
Q ss_pred CcEEECCCCccCCCcchhccCCCCccEEeccCccccCCccccccCCCCCcEEeccccccCcchhHHHhhccccceEEEec
Q 036411 59 LLELDLSSNNFEGHLPQCLNNLTHLKVLDISYNQLSGNFPSVLTNLTSLEYLDLSFIDFQGTFLINSLANHSKLEVLVLS 138 (487)
Q Consensus 59 L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~l~l~ 138 (487)
-+.|++++|.+.+.-+..|.++++|+++++.+|.++ .+|........|++|++.+|.+... -.+.++.+
T Consensus 80 t~~LdlsnNkl~~id~~~f~nl~nLq~v~l~~N~Lt-~IP~f~~~sghl~~L~L~~N~I~sv-~se~L~~l--------- 148 (873)
T KOG4194|consen 80 TQTLDLSNNKLSHIDFEFFYNLPNLQEVNLNKNELT-RIPRFGHESGHLEKLDLRHNLISSV-TSEELSAL--------- 148 (873)
T ss_pred eeeeeccccccccCcHHHHhcCCcceeeeeccchhh-hcccccccccceeEEeeeccccccc-cHHHHHhH---------
Confidence 345777777777666666777777777777777766 4555444455577777776665421 11222222
Q ss_pred cCCCccccccccccCCCCCceeecccccccccc-cccccCCcccEEeCCCCcccCCcchHhhhcCCCCcEEEcccCCCCC
Q 036411 139 SGNDMLQVKTENWLPTYPLKVLQLSHCHLNVNS-SFLLHQHHLKFLDLSHNQLVGNFPTWLLQNNTGLEVLILWNNSFSG 217 (487)
Q Consensus 139 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~ 217 (487)
+.|+.++++.|.++.++ ..+..-.++++|++++|.++ .
T Consensus 149 ----------------~alrslDLSrN~is~i~~~sfp~~~ni~~L~La~N~It-------------------------~ 187 (873)
T KOG4194|consen 149 ----------------PALRSLDLSRNLISEIPKPSFPAKVNIKKLNLASNRIT-------------------------T 187 (873)
T ss_pred ----------------hhhhhhhhhhchhhcccCCCCCCCCCceEEeecccccc-------------------------c
Confidence 23333333333332222 12333345555555555544 3
Q ss_pred CCCCCCCcCCCCCcEEEccCCcccccCCcccccccCceEEEEccCCCCCCCcchhhhccccCcEEecccccCCCCCchhh
Q 036411 218 ILPRLPNAKYDKLRHLDISTNNFSGKLPENLGIVFQKLIYLDVSKNSFEGNIPYSISEMKELITLDLSRNNFSGELPRSI 297 (487)
Q Consensus 218 ~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~ 297 (487)
.... .+..+.+|..|.++.|.++ .+|...++.+++|+.|++..|.+...-...|.++++|+.|.+..|.+. .+..+.
T Consensus 188 l~~~-~F~~lnsL~tlkLsrNrit-tLp~r~Fk~L~~L~~LdLnrN~irive~ltFqgL~Sl~nlklqrN~I~-kL~DG~ 264 (873)
T KOG4194|consen 188 LETG-HFDSLNSLLTLKLSRNRIT-TLPQRSFKRLPKLESLDLNRNRIRIVEGLTFQGLPSLQNLKLQRNDIS-KLDDGA 264 (873)
T ss_pred cccc-cccccchheeeecccCccc-ccCHHHhhhcchhhhhhccccceeeehhhhhcCchhhhhhhhhhcCcc-cccCcc
Confidence 3222 3355556777777777776 666666666678888888888776433456888999999999999998 888888
Q ss_pred hcCCCCCcEEECCCCccCCCCCcCCcCCCCccEEEcCCCcccccccccccCCCcccEEEccCCccCCCchhhhccccccc
Q 036411 298 FSSCLSLETLDLSNNNFYGQLFPNFMNLTHLSSLRLNNNHFSGKMADGLLSSTLLDVLDVSNNKLSGDIPHWIGNFSVLW 377 (487)
Q Consensus 298 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~ 377 (487)
|-.+.++++|++..|.+.......+..+++|+.|++++|.+.....+.+..+++|++|+++.|+++...+..|.-+..|+
T Consensus 265 Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~N~i~~l~~~sf~~L~~Le 344 (873)
T KOG4194|consen 265 FYGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYNAIQRIHIDSWSFTQKLKELDLSSNRITRLDEGSFRVLSQLE 344 (873)
T ss_pred eeeecccceeecccchhhhhhcccccccchhhhhccchhhhheeecchhhhcccceeEeccccccccCChhHHHHHHHhh
Confidence 88899999999999988766666777889999999999999888888888899999999999999988888999999999
Q ss_pred EEecCCccccCcchhhhccCcCCcEEeccCCccc----cccccccCCCcceEEEeeCcccCCcchHhhhccCcceEEeCC
Q 036411 378 LLLMSENYLQGSIPVQLGNLESLEFIDISENGLS----VSMVSLSNLSSVKHIYLHNNAINGLIPIALLRSSTLLTLDLR 453 (487)
Q Consensus 378 ~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~----~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~ 453 (487)
+|+++.|.++-.....|..+.+|+.|+++.|.+. .....|..+++|+.|++.||++..+...+|..+.+|++|||.
T Consensus 345 ~LnLs~Nsi~~l~e~af~~lssL~~LdLr~N~ls~~IEDaa~~f~gl~~LrkL~l~gNqlk~I~krAfsgl~~LE~LdL~ 424 (873)
T KOG4194|consen 345 ELNLSHNSIDHLAEGAFVGLSSLHKLDLRSNELSWCIEDAAVAFNGLPSLRKLRLTGNQLKSIPKRAFSGLEALEHLDLG 424 (873)
T ss_pred hhcccccchHHHHhhHHHHhhhhhhhcCcCCeEEEEEecchhhhccchhhhheeecCceeeecchhhhccCcccceecCC
Confidence 9999999887555667888899999999999874 344455689999999999999999888999999999999999
Q ss_pred CCcccccCcccccccCceeEEeccCC
Q 036411 454 DNKFFGRIPHQINELSNLHFLLLRGN 479 (487)
Q Consensus 454 ~~~~~~~~~~~l~~l~~L~~L~l~~~ 479 (487)
+|.+..+-+++|..+ .|+.|.+..-
T Consensus 425 ~NaiaSIq~nAFe~m-~Lk~Lv~nSs 449 (873)
T KOG4194|consen 425 DNAIASIQPNAFEPM-ELKELVMNSS 449 (873)
T ss_pred CCcceeecccccccc-hhhhhhhccc
Confidence 999988888899988 8888877653
|
|
| >KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=9e-35 Score=263.36 Aligned_cols=322 Identities=23% Similarity=0.210 Sum_probs=270.2
Q ss_pred cccccccccccccccCCcccEEeCCCCcccCCcchHhhhcCCCCcEEEcccCCCCCCCCCCCCcCCCCCcEEEccCCccc
Q 036411 162 LSHCHLNVNSSFLLHQHHLKFLDLSHNQLVGNFPTWLLQNNTGLEVLILWNNSFSGILPRLPNAKYDKLRHLDISTNNFS 241 (487)
Q Consensus 162 l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 241 (487)
+..|.++.+|.+-+...+++.|++.+|.++ .+.......++.|+.++++.|.+..+... .+..-.+++.|++++|.++
T Consensus 109 l~~N~Lt~IP~f~~~sghl~~L~L~~N~I~-sv~se~L~~l~alrslDLSrN~is~i~~~-sfp~~~ni~~L~La~N~It 186 (873)
T KOG4194|consen 109 LNKNELTRIPRFGHESGHLEKLDLRHNLIS-SVTSEELSALPALRSLDLSRNLISEIPKP-SFPAKVNIKKLNLASNRIT 186 (873)
T ss_pred eccchhhhcccccccccceeEEeeeccccc-cccHHHHHhHhhhhhhhhhhchhhcccCC-CCCCCCCceEEeecccccc
Confidence 333344445555555667888888888877 44444455788899999998887654333 4456678999999999998
Q ss_pred ccCCcccccccCceEEEEccCCCCCCCcchhhhccccCcEEecccccCCCCCchhhhcCCCCCcEEECCCCccCCCCCcC
Q 036411 242 GKLPENLGIVFQKLIYLDVSKNSFEGNIPYSISEMKELITLDLSRNNFSGELPRSIFSSCLSLETLDLSNNNFYGQLFPN 321 (487)
Q Consensus 242 ~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~ 321 (487)
+..... +..+.+|..|.++.|+++..-...|..+++|+.|++..|.+. .+....|.++++|+.+.+..|++.....-+
T Consensus 187 ~l~~~~-F~~lnsL~tlkLsrNrittLp~r~Fk~L~~L~~LdLnrN~ir-ive~ltFqgL~Sl~nlklqrN~I~kL~DG~ 264 (873)
T KOG4194|consen 187 TLETGH-FDSLNSLLTLKLSRNRITTLPQRSFKRLPKLESLDLNRNRIR-IVEGLTFQGLPSLQNLKLQRNDISKLDDGA 264 (873)
T ss_pred cccccc-ccccchheeeecccCcccccCHHHhhhcchhhhhhcccccee-eehhhhhcCchhhhhhhhhhcCcccccCcc
Confidence 444444 444579999999999999777888999999999999999997 777778999999999999999998777778
Q ss_pred CcCCCCccEEEcCCCcccccccccccCCCcccEEEccCCccCCCchhhhcccccccEEecCCccccCcchhhhccCcCCc
Q 036411 322 FMNLTHLSSLRLNNNHFSGKMADGLLSSTLLDVLDVSNNKLSGDIPHWIGNFSVLWLLLMSENYLQGSIPVQLGNLESLE 401 (487)
Q Consensus 322 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~ 401 (487)
|..+.++++|++..|.+.......+.++++|+.|+++.|.|..+.++.+..++.|+.|+++.|.++...++.|..+..|+
T Consensus 265 Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~N~i~~l~~~sf~~L~~Le 344 (873)
T KOG4194|consen 265 FYGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYNAIQRIHIDSWSFTQKLKELDLSSNRITRLDEGSFRVLSQLE 344 (873)
T ss_pred eeeecccceeecccchhhhhhcccccccchhhhhccchhhhheeecchhhhcccceeEeccccccccCChhHHHHHHHhh
Confidence 88999999999999999877778888999999999999999988999999999999999999999977778899999999
Q ss_pred EEeccCCcccccccc-ccCCCcceEEEeeCcccCC---cchHhhhccCcceEEeCCCCcccccCcccccccCceeEEecc
Q 036411 402 FIDISENGLSVSMVS-LSNLSSVKHIYLHNNAING---LIPIALLRSSTLLTLDLRDNKFFGRIPHQINELSNLHFLLLR 477 (487)
Q Consensus 402 ~l~l~~~~~~~~~~~-~~~~~~L~~L~l~~~~~~~---~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~ 477 (487)
.|.+++|++....+. |..+++|++||+++|.++- ....+|..+++|+.|.+.||++-.+...+|..+++|++|++.
T Consensus 345 ~LnLs~Nsi~~l~e~af~~lssL~~LdLr~N~ls~~IEDaa~~f~gl~~LrkL~l~gNqlk~I~krAfsgl~~LE~LdL~ 424 (873)
T KOG4194|consen 345 ELNLSHNSIDHLAEGAFVGLSSLHKLDLRSNELSWCIEDAAVAFNGLPSLRKLRLTGNQLKSIPKRAFSGLEALEHLDLG 424 (873)
T ss_pred hhcccccchHHHHhhHHHHhhhhhhhcCcCCeEEEEEecchhhhccchhhhheeecCceeeecchhhhccCcccceecCC
Confidence 999999999755544 4488999999999998763 245678889999999999999976667899999999999999
Q ss_pred CCccCCCCCC
Q 036411 478 GNSLQGRIPN 487 (487)
Q Consensus 478 ~~~~~~~~p~ 487 (487)
+|+|....|+
T Consensus 425 ~NaiaSIq~n 434 (873)
T KOG4194|consen 425 DNAIASIQPN 434 (873)
T ss_pred CCcceeeccc
Confidence 9999877664
|
|
| >KOG0472 consensus Leucine-rich repeat protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.7e-34 Score=248.97 Aligned_cols=459 Identities=27% Similarity=0.354 Sum_probs=288.3
Q ss_pred ccccccccEEecCCccccccccccccCCCCCcEEEccCccccCCcccccccCCCCCcEEECCCCccCCCcchhccCCCCc
Q 036411 4 FGSLKQLKILNLGFNFFIDSILPYLNTLTSLTTLNLRYNKIEGSRTKQGICNLKNLLELDLSSNNFEGHLPQCLNNLTHL 83 (487)
Q Consensus 4 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L 83 (487)
+.++..+.++++.++... ..|.++..+..++.++.+.+.+. ..+..+..+.+|+.++++++.+. +.+..++.+..|
T Consensus 64 l~nL~~l~vl~~~~n~l~-~lp~aig~l~~l~~l~vs~n~ls--~lp~~i~s~~~l~~l~~s~n~~~-el~~~i~~~~~l 139 (565)
T KOG0472|consen 64 LKNLACLTVLNVHDNKLS-QLPAAIGELEALKSLNVSHNKLS--ELPEQIGSLISLVKLDCSSNELK-ELPDSIGRLLDL 139 (565)
T ss_pred hhcccceeEEEeccchhh-hCCHHHHHHHHHHHhhcccchHh--hccHHHhhhhhhhhhhcccccee-ecCchHHHHhhh
Confidence 345566667777766543 34555666677777777777665 44556777777777777777776 556667777777
Q ss_pred cEEeccCccccCCccccccCCCCCcEEeccccccCcchhHHHhhccccceEEEeccCCCccccccccccCCCCCceeecc
Q 036411 84 KVLDISYNQLSGNFPSVLTNLTSLEYLDLSFIDFQGTFLINSLANHSKLEVLVLSSGNDMLQVKTENWLPTYPLKVLQLS 163 (487)
Q Consensus 84 ~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~ 163 (487)
+.++-.+|++. .+|..+.++.++..+++.++++... +..... ++.|++++. +.+.-+..+.....+.+|+.|++.
T Consensus 140 ~dl~~~~N~i~-slp~~~~~~~~l~~l~~~~n~l~~l-~~~~i~-m~~L~~ld~--~~N~L~tlP~~lg~l~~L~~LyL~ 214 (565)
T KOG0472|consen 140 EDLDATNNQIS-SLPEDMVNLSKLSKLDLEGNKLKAL-PENHIA-MKRLKHLDC--NSNLLETLPPELGGLESLELLYLR 214 (565)
T ss_pred hhhhccccccc-cCchHHHHHHHHHHhhccccchhhC-CHHHHH-HHHHHhccc--chhhhhcCChhhcchhhhHHHHhh
Confidence 77777777766 4566666777777777777766532 222223 666666665 333333333445555566666666
Q ss_pred cccccccccccccCCcccEEeCCCCcccCCcchHhhhcCCCCcEEEcccCCCCCCCCCCCCcCCCCCcEEEccCCccccc
Q 036411 164 HCHLNVNSSFLLHQHHLKFLDLSHNQLVGNFPTWLLQNNTGLEVLILWNNSFSGILPRLPNAKYDKLRHLDISTNNFSGK 243 (487)
Q Consensus 164 ~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~ 243 (487)
.+.+..+| .|.+|..|+++.++.|++. .++......++.+..|++..|.+...+... ..+.+|+.|++++|.++ .
T Consensus 215 ~Nki~~lP-ef~gcs~L~Elh~g~N~i~-~lpae~~~~L~~l~vLDLRdNklke~Pde~--clLrsL~rLDlSNN~is-~ 289 (565)
T KOG0472|consen 215 RNKIRFLP-EFPGCSLLKELHVGENQIE-MLPAEHLKHLNSLLVLDLRDNKLKEVPDEI--CLLRSLERLDLSNNDIS-S 289 (565)
T ss_pred hcccccCC-CCCccHHHHHHHhcccHHH-hhHHHHhcccccceeeeccccccccCchHH--HHhhhhhhhcccCCccc-c
Confidence 66666665 4556666666666666665 555555556666666666666655443332 34455666666666665 4
Q ss_pred CCcccccccCceEEEEccCCCCCCCcchhhhc-----cccCcE----Eeccccc----CCCCCchhhh---cCCCCCcEE
Q 036411 244 LPENLGIVFQKLIYLDVSKNSFEGNIPYSISE-----MKELIT----LDLSRNN----FSGELPRSIF---SSCLSLETL 307 (487)
Q Consensus 244 ~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~-----~~~L~~----L~l~~~~----~~~~~~~~~~---~~~~~L~~L 307 (487)
.|...+.. .|+.|.+.||++.......+++ ++.|+. =.++... -..+.+...| ....+.+.|
T Consensus 290 Lp~sLgnl--hL~~L~leGNPlrTiRr~ii~~gT~~vLKyLrs~~~~dglS~se~~~e~~~t~~~~~~~~~~~~i~tkiL 367 (565)
T KOG0472|consen 290 LPYSLGNL--HLKFLALEGNPLRTIRREIISKGTQEVLKYLRSKIKDDGLSQSEGGTETAMTLPSESFPDIYAIITTKIL 367 (565)
T ss_pred CCcccccc--eeeehhhcCCchHHHHHHHHcccHHHHHHHHHHhhccCCCCCCcccccccCCCCCCcccchhhhhhhhhh
Confidence 55555543 5666666666653211111110 011111 0011000 0001111111 123455666
Q ss_pred ECCCCccCCCCCcCCcCC--CCccEEEcCCCcccccccccccCCCccc-EEEccCCccCCCchhhhcccccccEEecCCc
Q 036411 308 DLSNNNFYGQLFPNFMNL--THLSSLRLNNNHFSGKMADGLLSSTLLD-VLDVSNNKLSGDIPHWIGNFSVLWLLLMSEN 384 (487)
Q Consensus 308 ~l~~~~~~~~~~~~~~~~--~~L~~L~l~~~~~~~~~~~~~~~~~~L~-~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~ 384 (487)
++++-+++....+.|... .-...+++++|.+. +.|..+..+..+. .+.++.+.+ ++.|..+..+++|..|++++|
T Consensus 368 ~~s~~qlt~VPdEVfea~~~~~Vt~VnfskNqL~-elPk~L~~lkelvT~l~lsnn~i-sfv~~~l~~l~kLt~L~L~NN 445 (565)
T KOG0472|consen 368 DVSDKQLTLVPDEVFEAAKSEIVTSVNFSKNQLC-ELPKRLVELKELVTDLVLSNNKI-SFVPLELSQLQKLTFLDLSNN 445 (565)
T ss_pred cccccccccCCHHHHHHhhhcceEEEecccchHh-hhhhhhHHHHHHHHHHHhhcCcc-ccchHHHHhhhcceeeecccc
Confidence 666655553332222221 22566777777765 5555544444333 344455544 488888889999999999998
Q ss_pred cccCcchhhhccCcCCcEEeccCCccccccccccCCCcceEEEeeCcccCCcchHhhhccCcceEEeCCCCcccccCccc
Q 036411 385 YLQGSIPVQLGNLESLEFIDISENGLSVSMVSLSNLSSVKHIYLHNNAINGLIPIALLRSSTLLTLDLRDNKFFGRIPHQ 464 (487)
Q Consensus 385 ~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~ 464 (487)
.+. ..|..+..+..|+.++++.|++...+.++.-...++.+-.++|++....+..+.++.+|..|||.+|.+. .+|..
T Consensus 446 ~Ln-~LP~e~~~lv~Lq~LnlS~NrFr~lP~~~y~lq~lEtllas~nqi~~vd~~~l~nm~nL~tLDL~nNdlq-~IPp~ 523 (565)
T KOG0472|consen 446 LLN-DLPEEMGSLVRLQTLNLSFNRFRMLPECLYELQTLETLLASNNQIGSVDPSGLKNMRNLTTLDLQNNDLQ-QIPPI 523 (565)
T ss_pred hhh-hcchhhhhhhhhheecccccccccchHHHhhHHHHHHHHhccccccccChHHhhhhhhcceeccCCCchh-hCChh
Confidence 877 7888888888899999999988866666665566777777789999888888999999999999999984 78999
Q ss_pred ccccCceeEEeccCCccC
Q 036411 465 INELSNLHFLLLRGNSLQ 482 (487)
Q Consensus 465 l~~l~~L~~L~l~~~~~~ 482 (487)
+++|.+|++|+++||||+
T Consensus 524 LgnmtnL~hLeL~gNpfr 541 (565)
T KOG0472|consen 524 LGNMTNLRHLELDGNPFR 541 (565)
T ss_pred hccccceeEEEecCCccC
Confidence 999999999999999998
|
|
| >KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.95 E-value=8.2e-31 Score=250.01 Aligned_cols=447 Identities=27% Similarity=0.325 Sum_probs=235.5
Q ss_pred ccEEecCCccccccccccccCCCCCcEEEccCccccCCcccccccCCCCCcEEECCCCccCCCcchhccCCCCccEEecc
Q 036411 10 LKILNLGFNFFIDSILPYLNTLTSLTTLNLRYNKIEGSRTKQGICNLKNLLELDLSSNNFEGHLPQCLNNLTHLKVLDIS 89 (487)
Q Consensus 10 L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~ 89 (487)
+..|++..|.+.....++..+.-+|+.|+++++.++ ..+..+..+++|+.|+++.|.+. ..|....++.+|+++++.
T Consensus 23 ~~~ln~~~N~~l~~pl~~~~~~v~L~~l~lsnn~~~--~fp~~it~l~~L~~ln~s~n~i~-~vp~s~~~~~~l~~lnL~ 99 (1081)
T KOG0618|consen 23 LQILNLRRNSLLSRPLEFVEKRVKLKSLDLSNNQIS--SFPIQITLLSHLRQLNLSRNYIR-SVPSSCSNMRNLQYLNLK 99 (1081)
T ss_pred HHhhhccccccccCchHHhhheeeeEEeeccccccc--cCCchhhhHHHHhhcccchhhHh-hCchhhhhhhcchhheec
Confidence 566777777655544555566666888888888876 34445777888888888888887 667778888888888888
Q ss_pred CccccCCccccccCCCCCcEEeccccccCcchhHHHhhccccceEEEeccCCCccccccc---------------cccCC
Q 036411 90 YNQLSGNFPSVLTNLTSLEYLDLSFIDFQGTFLINSLANHSKLEVLVLSSGNDMLQVKTE---------------NWLPT 154 (487)
Q Consensus 90 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~---------------~~~~~ 154 (487)
++... .+|..+..+++|++|+++.|.+.. .+..+..+..+..+..+++..+...... .....
T Consensus 100 ~n~l~-~lP~~~~~lknl~~LdlS~N~f~~--~Pl~i~~lt~~~~~~~s~N~~~~~lg~~~ik~~~l~~n~l~~~~~~~i 176 (1081)
T KOG0618|consen 100 NNRLQ-SLPASISELKNLQYLDLSFNHFGP--IPLVIEVLTAEEELAASNNEKIQRLGQTSIKKLDLRLNVLGGSFLIDI 176 (1081)
T ss_pred cchhh-cCchhHHhhhcccccccchhccCC--CchhHHhhhHHHHHhhhcchhhhhhccccchhhhhhhhhcccchhcch
Confidence 77766 678888888888888888887642 1223333333333333322111111111 01111
Q ss_pred CCCce-eecccccccccccccccCCcccEEeCCCCcccCCcchHhhhcCCCCcEEEcccCCCCCCCCCCCCcCCCCCcEE
Q 036411 155 YPLKV-LQLSHCHLNVNSSFLLHQHHLKFLDLSHNQLVGNFPTWLLQNNTGLEVLILWNNSFSGILPRLPNAKYDKLRHL 233 (487)
Q Consensus 155 ~~L~~-L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L 233 (487)
..+++ +++..+.+. ...+..+.+|+.+....+++. .+.. ..+.++.|....|.++.... -....+++.+
T Consensus 177 ~~l~~~ldLr~N~~~--~~dls~~~~l~~l~c~rn~ls-~l~~----~g~~l~~L~a~~n~l~~~~~---~p~p~nl~~~ 246 (1081)
T KOG0618|consen 177 YNLTHQLDLRYNEME--VLDLSNLANLEVLHCERNQLS-ELEI----SGPSLTALYADHNPLTTLDV---HPVPLNLQYL 246 (1081)
T ss_pred hhhheeeecccchhh--hhhhhhccchhhhhhhhcccc-eEEe----cCcchheeeeccCcceeecc---ccccccceee
Confidence 12222 444443332 112233344444444444332 1111 23445555555554441111 1223345566
Q ss_pred EccCCcccccCCcccccccCceEEEEccCCCCCCCcchhhhccccCcEEecccccCCCCCchhhhcCCCCCcEEECCCCc
Q 036411 234 DISTNNFSGKLPENLGIVFQKLIYLDVSKNSFEGNIPYSISEMKELITLDLSRNNFSGELPRSIFSSCLSLETLDLSNNN 313 (487)
Q Consensus 234 ~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 313 (487)
+++.+.+. .+|.++. .+.+|+.++..+|.++ ..+......++|+.+....|.+. .+|... ++...|++|++..|.
T Consensus 247 dis~n~l~-~lp~wi~-~~~nle~l~~n~N~l~-~lp~ri~~~~~L~~l~~~~nel~-yip~~l-e~~~sL~tLdL~~N~ 321 (1081)
T KOG0618|consen 247 DISHNNLS-NLPEWIG-ACANLEALNANHNRLV-ALPLRISRITSLVSLSAAYNELE-YIPPFL-EGLKSLRTLDLQSNN 321 (1081)
T ss_pred ecchhhhh-cchHHHH-hcccceEecccchhHH-hhHHHHhhhhhHHHHHhhhhhhh-hCCCcc-cccceeeeeeehhcc
Confidence 66666555 4443333 3456666666666554 33334444444444444444444 344321 334555555555554
Q ss_pred cCCCCCcCC-------------------------cCCCCccEEEcCCCcccccccccccCCCcccEEEccCCccCCCchh
Q 036411 314 FYGQLFPNF-------------------------MNLTHLSSLRLNNNHFSGKMADGLLSSTLLDVLDVSNNKLSGDIPH 368 (487)
Q Consensus 314 ~~~~~~~~~-------------------------~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~ 368 (487)
+.......+ ..++.|+.|++.+|.++......+.+..+|+.|++++|++..+-..
T Consensus 322 L~~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNrL~~fpas 401 (1081)
T KOG0618|consen 322 LPSLPDNFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYNRLNSFPAS 401 (1081)
T ss_pred ccccchHHHhhhhHHHHHHhhhhccccccccccchhhHHHHHHHHhcCcccccchhhhccccceeeeeecccccccCCHH
Confidence 432211111 1234455555555555544445555556666666666666545555
Q ss_pred hhcccccccEEecCCccccCcchhhhccCcCCcEEeccCCccccccccccCCCcceEEEeeCcccCCcchHhhhccCcce
Q 036411 369 WIGNFSVLWLLLMSENYLQGSIPVQLGNLESLEFIDISENGLSVSMVSLSNLSSVKHIYLHNNAINGLIPIALLRSSTLL 448 (487)
Q Consensus 369 ~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~ 448 (487)
.+.+++.|++|+++||.++ .+|.++.+++.|+.|...+|.+...+ .+..++.|+.+|++.|+++...-....-.++|+
T Consensus 402 ~~~kle~LeeL~LSGNkL~-~Lp~tva~~~~L~tL~ahsN~l~~fP-e~~~l~qL~~lDlS~N~L~~~~l~~~~p~p~Lk 479 (1081)
T KOG0618|consen 402 KLRKLEELEELNLSGNKLT-TLPDTVANLGRLHTLRAHSNQLLSFP-ELAQLPQLKVLDLSCNNLSEVTLPEALPSPNLK 479 (1081)
T ss_pred HHhchHHhHHHhcccchhh-hhhHHHHhhhhhHHHhhcCCceeech-hhhhcCcceEEecccchhhhhhhhhhCCCcccc
Confidence 5566666666666666665 45566666666666666666665444 455566666666666665543221111125666
Q ss_pred EEeCCCCcccccCcccccccCceeEEeccCC
Q 036411 449 TLDLRDNKFFGRIPHQINELSNLHFLLLRGN 479 (487)
Q Consensus 449 ~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~ 479 (487)
.||++||.-.......|..+.++...++.-+
T Consensus 480 yLdlSGN~~l~~d~~~l~~l~~l~~~~i~~~ 510 (1081)
T KOG0618|consen 480 YLDLSGNTRLVFDHKTLKVLKSLSQMDITLN 510 (1081)
T ss_pred eeeccCCcccccchhhhHHhhhhhheecccC
Confidence 6666666533333334445555544444433
|
|
| >KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.95 E-value=2.8e-30 Score=246.40 Aligned_cols=432 Identities=27% Similarity=0.327 Sum_probs=312.9
Q ss_pred cccccccEEecCCccccccccccccCCCCCcEEEccCccccCCcccccccCCCCCcEEECCCCccCCCcchhccCCCCcc
Q 036411 5 GSLKQLKILNLGFNFFIDSILPYLNTLTSLTTLNLRYNKIEGSRTKQGICNLKNLLELDLSSNNFEGHLPQCLNNLTHLK 84 (487)
Q Consensus 5 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~ 84 (487)
++.-+|+.|++++|.. ...|..+..+++|+.|+++.|.|. ..+....++.+|+++.|.++... ..|..+..+.+|+
T Consensus 42 ~~~v~L~~l~lsnn~~-~~fp~~it~l~~L~~ln~s~n~i~--~vp~s~~~~~~l~~lnL~~n~l~-~lP~~~~~lknl~ 117 (1081)
T KOG0618|consen 42 EKRVKLKSLDLSNNQI-SSFPIQITLLSHLRQLNLSRNYIR--SVPSSCSNMRNLQYLNLKNNRLQ-SLPASISELKNLQ 117 (1081)
T ss_pred hheeeeEEeecccccc-ccCCchhhhHHHHhhcccchhhHh--hCchhhhhhhcchhheeccchhh-cCchhHHhhhccc
Confidence 3444599999998864 456778899999999999999887 44567889999999999999887 7888999999999
Q ss_pred EEeccCccccCCccccccCCCCCcEEecccc-------------------ccCcchhHHHhhccccceEEEeccCCCccc
Q 036411 85 VLDISYNQLSGNFPSVLTNLTSLEYLDLSFI-------------------DFQGTFLINSLANHSKLEVLVLSSGNDMLQ 145 (487)
Q Consensus 85 ~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~-------------------~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~ 145 (487)
+|++++|.+. ..|..+..+..+..+..++| .+.+. .......++. .+++.++... .
T Consensus 118 ~LdlS~N~f~-~~Pl~i~~lt~~~~~~~s~N~~~~~lg~~~ik~~~l~~n~l~~~-~~~~i~~l~~--~ldLr~N~~~-~ 192 (1081)
T KOG0618|consen 118 YLDLSFNHFG-PIPLVIEVLTAEEELAASNNEKIQRLGQTSIKKLDLRLNVLGGS-FLIDIYNLTH--QLDLRYNEME-V 192 (1081)
T ss_pred ccccchhccC-CCchhHHhhhHHHHHhhhcchhhhhhccccchhhhhhhhhcccc-hhcchhhhhe--eeecccchhh-h
Confidence 9999999887 34555555555555555544 22211 1112222222 3444433222 1
Q ss_pred cccc-----------------cccCCCCCceeecccccccccccccccCCcccEEeCCCCcccCCcchHhhhcCCCCcEE
Q 036411 146 VKTE-----------------NWLPTYPLKVLQLSHCHLNVNSSFLLHQHHLKFLDLSHNQLVGNFPTWLLQNNTGLEVL 208 (487)
Q Consensus 146 ~~~~-----------------~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L 208 (487)
.... ....-++++.|....|.+..... .....+|+.++++.+.++ .+| .+...+.+|+.+
T Consensus 193 ~dls~~~~l~~l~c~rn~ls~l~~~g~~l~~L~a~~n~l~~~~~-~p~p~nl~~~dis~n~l~-~lp-~wi~~~~nle~l 269 (1081)
T KOG0618|consen 193 LDLSNLANLEVLHCERNQLSELEISGPSLTALYADHNPLTTLDV-HPVPLNLQYLDISHNNLS-NLP-EWIGACANLEAL 269 (1081)
T ss_pred hhhhhccchhhhhhhhcccceEEecCcchheeeeccCcceeecc-ccccccceeeecchhhhh-cch-HHHHhcccceEe
Confidence 1000 01122345555555555432211 223467888999988887 677 555688999999
Q ss_pred EcccCCCCCCCCCCCCcCCCCCcEEEccCCcccccCCcccccccCceEEEEccCCCCCCCcchhhhcccc-CcEEecccc
Q 036411 209 ILWNNSFSGILPRLPNAKYDKLRHLDISTNNFSGKLPENLGIVFQKLIYLDVSKNSFEGNIPYSISEMKE-LITLDLSRN 287 (487)
Q Consensus 209 ~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~-L~~L~l~~~ 287 (487)
...+|.++....+. ....+|+.+.+..|++. .++.... ....|++|++..|.+.......+..... ++.+..+.+
T Consensus 270 ~~n~N~l~~lp~ri--~~~~~L~~l~~~~nel~-yip~~le-~~~sL~tLdL~~N~L~~lp~~~l~v~~~~l~~ln~s~n 345 (1081)
T KOG0618|consen 270 NANHNRLVALPLRI--SRITSLVSLSAAYNELE-YIPPFLE-GLKSLRTLDLQSNNLPSLPDNFLAVLNASLNTLNVSSN 345 (1081)
T ss_pred cccchhHHhhHHHH--hhhhhHHHHHhhhhhhh-hCCCccc-ccceeeeeeehhccccccchHHHhhhhHHHHHHhhhhc
Confidence 99888876544332 55677888888888877 5555443 2478999999999887333323333332 667777777
Q ss_pred cCCCCCchhhhcCCCCCcEEECCCCccCCCCCcCCcCCCCccEEEcCCCcccccccccccCCCcccEEEccCCccCCCch
Q 036411 288 NFSGELPRSIFSSCLSLETLDLSNNNFYGQLFPNFMNLTHLSSLRLNNNHFSGKMADGLLSSTLLDVLDVSNNKLSGDIP 367 (487)
Q Consensus 288 ~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~ 367 (487)
.+. ..|..-=...+.|+.|.+.+|.+++..++.+.++++|+.|++++|.+.......+..++.|++|+++||+++ .+|
T Consensus 346 ~l~-~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNrL~~fpas~~~kle~LeeL~LSGNkL~-~Lp 423 (1081)
T KOG0618|consen 346 KLS-TLPSYEENNHAALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYNRLNSFPASKLRKLEELEELNLSGNKLT-TLP 423 (1081)
T ss_pred ccc-ccccccchhhHHHHHHHHhcCcccccchhhhccccceeeeeecccccccCCHHHHhchHHhHHHhcccchhh-hhh
Confidence 776 555322234578999999999999988899999999999999999998677778889999999999999997 788
Q ss_pred hhhcccccccEEecCCccccCcchhhhccCcCCcEEeccCCccccccccccCC-CcceEEEeeCcccCCcchHhhhccCc
Q 036411 368 HWIGNFSVLWLLLMSENYLQGSIPVQLGNLESLEFIDISENGLSVSMVSLSNL-SSVKHIYLHNNAINGLIPIALLRSST 446 (487)
Q Consensus 368 ~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~-~~L~~L~l~~~~~~~~~~~~~~~~~~ 446 (487)
.....+..|++|....|.+. ..| .+..++.|+.+|++.|.++........- |+|++||++||.-....-..+..+++
T Consensus 424 ~tva~~~~L~tL~ahsN~l~-~fP-e~~~l~qL~~lDlS~N~L~~~~l~~~~p~p~LkyLdlSGN~~l~~d~~~l~~l~~ 501 (1081)
T KOG0618|consen 424 DTVANLGRLHTLRAHSNQLL-SFP-ELAQLPQLKVLDLSCNNLSEVTLPEALPSPNLKYLDLSGNTRLVFDHKTLKVLKS 501 (1081)
T ss_pred HHHHhhhhhHHHhhcCCcee-ech-hhhhcCcceEEecccchhhhhhhhhhCCCcccceeeccCCcccccchhhhHHhhh
Confidence 99999999999999999987 677 7889999999999999986444433333 89999999999866666678888888
Q ss_pred ceEEeCCCCc
Q 036411 447 LLTLDLRDNK 456 (487)
Q Consensus 447 L~~L~l~~~~ 456 (487)
+...++.-++
T Consensus 502 l~~~~i~~~~ 511 (1081)
T KOG0618|consen 502 LSQMDITLNN 511 (1081)
T ss_pred hhheecccCC
Confidence 8888887663
|
|
| >KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.95 E-value=4.1e-30 Score=235.43 Aligned_cols=368 Identities=25% Similarity=0.333 Sum_probs=240.8
Q ss_pred CCccEEeccCcccc-CCccccccCCCCCcEEeccccccCcchhHHHhhccccceEEEeccCCCccccccccccCCCCCce
Q 036411 81 THLKVLDISYNQLS-GNFPSVLTNLTSLEYLDLSFIDFQGTFLINSLANHSKLEVLVLSSGNDMLQVKTENWLPTYPLKV 159 (487)
Q Consensus 81 ~~L~~L~l~~~~~~-~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~ 159 (487)
|-.+-+++++|.++ ...|.....+++++.|.+...++. ..++.++.+. +|++
T Consensus 7 pFVrGvDfsgNDFsg~~FP~~v~qMt~~~WLkLnrt~L~--~vPeEL~~lq-------------------------kLEH 59 (1255)
T KOG0444|consen 7 PFVRGVDFSGNDFSGDRFPHDVEQMTQMTWLKLNRTKLE--QVPEELSRLQ-------------------------KLEH 59 (1255)
T ss_pred ceeecccccCCcCCCCcCchhHHHhhheeEEEechhhhh--hChHHHHHHh-------------------------hhhh
Confidence 34455666666665 456666666677777776665542 1233444444 4555
Q ss_pred eecccccccccccccccCCcccEEeCCCCccc-CCcchHhhhcCCCCcEEEcccCCCCCCCCCCCCcCCCCCcEEEccCC
Q 036411 160 LQLSHCHLNVNSSFLLHQHHLKFLDLSHNQLV-GNFPTWLLQNNTGLEVLILWNNSFSGILPRLPNAKYDKLRHLDISTN 238 (487)
Q Consensus 160 L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~-~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~ 238 (487)
|++..|++..+...+..++.|+.+.+..|++. ..+|..+| .+..|+.|++++|.+...+.. ...-+++-.|++++|
T Consensus 60 Ls~~HN~L~~vhGELs~Lp~LRsv~~R~N~LKnsGiP~diF-~l~dLt~lDLShNqL~EvP~~--LE~AKn~iVLNLS~N 136 (1255)
T KOG0444|consen 60 LSMAHNQLISVHGELSDLPRLRSVIVRDNNLKNSGIPTDIF-RLKDLTILDLSHNQLREVPTN--LEYAKNSIVLNLSYN 136 (1255)
T ss_pred hhhhhhhhHhhhhhhccchhhHHHhhhccccccCCCCchhc-ccccceeeecchhhhhhcchh--hhhhcCcEEEEcccC
Confidence 55555555444555555666666666666542 24444444 556666666666655433222 133345666777777
Q ss_pred cccccCCcccccccCceEEEEccCCCCCCCcchhhhccccCcEEecccccCCCCCchhhhcCCCCCcEEECCCCccC-CC
Q 036411 239 NFSGKLPENLGIVFQKLIYLDVSKNSFEGNIPYSISEMKELITLDLSRNNFSGELPRSIFSSCLSLETLDLSNNNFY-GQ 317 (487)
Q Consensus 239 ~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~-~~ 317 (487)
++. .+|..++..+..|-.|++++|++. ..|.....+..|++|++++|.+. -+....+-.+++|++|.+++.+-+ ..
T Consensus 137 ~Ie-tIPn~lfinLtDLLfLDLS~NrLe-~LPPQ~RRL~~LqtL~Ls~NPL~-hfQLrQLPsmtsL~vLhms~TqRTl~N 213 (1255)
T KOG0444|consen 137 NIE-TIPNSLFINLTDLLFLDLSNNRLE-MLPPQIRRLSMLQTLKLSNNPLN-HFQLRQLPSMTSLSVLHMSNTQRTLDN 213 (1255)
T ss_pred ccc-cCCchHHHhhHhHhhhccccchhh-hcCHHHHHHhhhhhhhcCCChhh-HHHHhcCccchhhhhhhcccccchhhc
Confidence 776 667766665666777777777776 55556666777777777777654 222222334566777777766532 35
Q ss_pred CCcCCcCCCCccEEEcCCCcccccccccccCCCcccEEEccCCccCCCchhhhcccccccEEecCCccccCcchhhhccC
Q 036411 318 LFPNFMNLTHLSSLRLNNNHFSGKMADGLLSSTLLDVLDVSNNKLSGDIPHWIGNFSVLWLLLMSENYLQGSIPVQLGNL 397 (487)
Q Consensus 318 ~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~ 397 (487)
+|.++..+.+|+.++++.|.+. ..++++....+|+.|++++|+++ .+.-..+...+|++|+++.|+++ .+|..+.++
T Consensus 214 ~Ptsld~l~NL~dvDlS~N~Lp-~vPecly~l~~LrrLNLS~N~it-eL~~~~~~W~~lEtLNlSrNQLt-~LP~avcKL 290 (1255)
T KOG0444|consen 214 IPTSLDDLHNLRDVDLSENNLP-IVPECLYKLRNLRRLNLSGNKIT-ELNMTEGEWENLETLNLSRNQLT-VLPDAVCKL 290 (1255)
T ss_pred CCCchhhhhhhhhccccccCCC-cchHHHhhhhhhheeccCcCcee-eeeccHHHHhhhhhhccccchhc-cchHHHhhh
Confidence 5667777777888888877776 67777777778888888888776 33334455567778888888877 778888888
Q ss_pred cCCcEEeccCCcc--ccccccccCCCcceEEEeeCcccCCcchHhhhccCcceEEeCCCCcccccCcccccccCceeEEe
Q 036411 398 ESLEFIDISENGL--SVSMVSLSNLSSVKHIYLHNNAINGLIPIALLRSSTLLTLDLRDNKFFGRIPHQINELSNLHFLL 475 (487)
Q Consensus 398 ~~L~~l~l~~~~~--~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~ 475 (487)
++|+.|...+|++ ..++.++..+.+|+++...+|.+. ..|+.+..|..|+.|.|+.|.+. .+|+++.-++.|+.||
T Consensus 291 ~kL~kLy~n~NkL~FeGiPSGIGKL~~Levf~aanN~LE-lVPEglcRC~kL~kL~L~~NrLi-TLPeaIHlL~~l~vLD 368 (1255)
T KOG0444|consen 291 TKLTKLYANNNKLTFEGIPSGIGKLIQLEVFHAANNKLE-LVPEGLCRCVKLQKLKLDHNRLI-TLPEAIHLLPDLKVLD 368 (1255)
T ss_pred HHHHHHHhccCcccccCCccchhhhhhhHHHHhhccccc-cCchhhhhhHHHHHhccccccee-echhhhhhcCCcceee
Confidence 8888888888876 356777777777888877777776 45777888888888888888764 5788888888888888
Q ss_pred ccCCccCCCCC
Q 036411 476 LRGNSLQGRIP 486 (487)
Q Consensus 476 l~~~~~~~~~p 486 (487)
+..||-.-.+|
T Consensus 369 lreNpnLVMPP 379 (1255)
T KOG0444|consen 369 LRENPNLVMPP 379 (1255)
T ss_pred ccCCcCccCCC
Confidence 88887554544
|
|
| >KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.94 E-value=2.9e-29 Score=229.93 Aligned_cols=365 Identities=24% Similarity=0.319 Sum_probs=175.8
Q ss_pred CCCcEEEccCccccCCcccccccCCCCCcEEECCCCccCCCcchhccCCCCccEEeccCccccCCccccccCCCCCcEEe
Q 036411 32 TSLTTLNLRYNKIEGSRTKQGICNLKNLLELDLSSNNFEGHLPQCLNNLTHLKVLDISYNQLSGNFPSVLTNLTSLEYLD 111 (487)
Q Consensus 32 ~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~ 111 (487)
|-.+-.++++|++++...|.....++.++.|.+..+++. .+|+.++.+.+|++|.+++|.+.. +-..+..++.|+.+.
T Consensus 7 pFVrGvDfsgNDFsg~~FP~~v~qMt~~~WLkLnrt~L~-~vPeEL~~lqkLEHLs~~HN~L~~-vhGELs~Lp~LRsv~ 84 (1255)
T KOG0444|consen 7 PFVRGVDFSGNDFSGDRFPHDVEQMTQMTWLKLNRTKLE-QVPEELSRLQKLEHLSMAHNQLIS-VHGELSDLPRLRSVI 84 (1255)
T ss_pred ceeecccccCCcCCCCcCchhHHHhhheeEEEechhhhh-hChHHHHHHhhhhhhhhhhhhhHh-hhhhhccchhhHHHh
Confidence 334445555555544444444445555555555555444 445555555555555555554431 222334444445444
Q ss_pred ccccccCcchhHHHhhccccceEEEeccCCCccccccccccCCCCCceeecccccccccccccccCCcccEEeCCCCccc
Q 036411 112 LSFIDFQGTFLINSLANHSKLEVLVLSSGNDMLQVKTENWLPTYPLKVLQLSHCHLNVNSSFLLHQHHLKFLDLSHNQLV 191 (487)
Q Consensus 112 l~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 191 (487)
+.+|.+..... +..+..+..|+.|+++.|++...|..+...+++-.|++++|++.
T Consensus 85 ~R~N~LKnsGi-------------------------P~diF~l~dLt~lDLShNqL~EvP~~LE~AKn~iVLNLS~N~Ie 139 (1255)
T KOG0444|consen 85 VRDNNLKNSGI-------------------------PTDIFRLKDLTILDLSHNQLREVPTNLEYAKNSIVLNLSYNNIE 139 (1255)
T ss_pred hhccccccCCC-------------------------CchhcccccceeeecchhhhhhcchhhhhhcCcEEEEcccCccc
Confidence 44444332211 11223334455555555666555665566666666666666664
Q ss_pred CCcchHhhhcCCCCcEEEcccCCCCCCCCCCCCcCCCCCcEEEccCCcccccCCcccccccCceEEEEccCCCCCCCcch
Q 036411 192 GNFPTWLLQNNTGLEVLILWNNSFSGILPRLPNAKYDKLRHLDISTNNFSGKLPENLGIVFQKLIYLDVSKNSFEGNIPY 271 (487)
Q Consensus 192 ~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~ 271 (487)
.+|..++.++..|-.|++++|.+...++++ ..+..|++|++++| ++.-.-..
T Consensus 140 -tIPn~lfinLtDLLfLDLS~NrLe~LPPQ~--RRL~~LqtL~Ls~N-------------------------PL~hfQLr 191 (1255)
T KOG0444|consen 140 -TIPNSLFINLTDLLFLDLSNNRLEMLPPQI--RRLSMLQTLKLSNN-------------------------PLNHFQLR 191 (1255)
T ss_pred -cCCchHHHhhHhHhhhccccchhhhcCHHH--HHHhhhhhhhcCCC-------------------------hhhHHHHh
Confidence 566666656666666666666554443332 33444555555554 43222222
Q ss_pred hhhccccCcEEecccccCC-CCCchhhhcCCCCCcEEECCCCccCCCCCcCCcCCCCccEEEcCCCcccccccccccCCC
Q 036411 272 SISEMKELITLDLSRNNFS-GELPRSIFSSCLSLETLDLSNNNFYGQLFPNFMNLTHLSSLRLNNNHFSGKMADGLLSST 350 (487)
Q Consensus 272 ~~~~~~~L~~L~l~~~~~~-~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~ 350 (487)
.++.+++|+.|.+++.+-+ +.+|..+ ..+.+|..++++.|.+. ..|+.+..+++|++|++++|.++ +...+...+.
T Consensus 192 QLPsmtsL~vLhms~TqRTl~N~Ptsl-d~l~NL~dvDlS~N~Lp-~vPecly~l~~LrrLNLS~N~it-eL~~~~~~W~ 268 (1255)
T KOG0444|consen 192 QLPSMTSLSVLHMSNTQRTLDNIPTSL-DDLHNLRDVDLSENNLP-IVPECLYKLRNLRRLNLSGNKIT-ELNMTEGEWE 268 (1255)
T ss_pred cCccchhhhhhhcccccchhhcCCCch-hhhhhhhhccccccCCC-cchHHHhhhhhhheeccCcCcee-eeeccHHHHh
Confidence 2333444444444444321 2333332 33444455555544443 23344444455555555555544 3333344444
Q ss_pred cccEEEccCCccCCCchhhhcccccccEEecCCccccC-cchhhhccCcCCcEEeccCCccccccccccCCCcceEEEee
Q 036411 351 LLDVLDVSNNKLSGDIPHWIGNFSVLWLLLMSENYLQG-SIPVQLGNLESLEFIDISENGLSVSMVSLSNLSSVKHIYLH 429 (487)
Q Consensus 351 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~-~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~L~~L~l~ 429 (487)
+|++|+++.|+++ .+|.++..++.|+.|.+.+|+++. .+|+.++++..|+.+...+|.+...++++..|+.|+.|.++
T Consensus 269 ~lEtLNlSrNQLt-~LP~avcKL~kL~kLy~n~NkL~FeGiPSGIGKL~~Levf~aanN~LElVPEglcRC~kL~kL~L~ 347 (1255)
T KOG0444|consen 269 NLETLNLSRNQLT-VLPDAVCKLTKLTKLYANNNKLTFEGIPSGIGKLIQLEVFHAANNKLELVPEGLCRCVKLQKLKLD 347 (1255)
T ss_pred hhhhhccccchhc-cchHHHhhhHHHHHHHhccCcccccCCccchhhhhhhHHHHhhccccccCchhhhhhHHHHHhccc
Confidence 5555555555554 445555555555555555554432 23444555555555555555554455555555555555555
Q ss_pred CcccCCcchHhhhccCcceEEeCCCCc
Q 036411 430 NNAINGLIPIALLRSSTLLTLDLRDNK 456 (487)
Q Consensus 430 ~~~~~~~~~~~~~~~~~L~~L~l~~~~ 456 (487)
.|.+.+ .|+++.-++.|+.|++..|+
T Consensus 348 ~NrLiT-LPeaIHlL~~l~vLDlreNp 373 (1255)
T KOG0444|consen 348 HNRLIT-LPEAIHLLPDLKVLDLRENP 373 (1255)
T ss_pred ccceee-chhhhhhcCCcceeeccCCc
Confidence 555443 24445445555555555554
|
|
| >KOG0472 consensus Leucine-rich repeat protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.94 E-value=1e-30 Score=226.87 Aligned_cols=456 Identities=26% Similarity=0.346 Sum_probs=266.8
Q ss_pred cEEecCCccccccccccccCCCCCcEEEccCccccCCcccccccCCCCCcEEECCCCccCCCcchhccCCCCccEEeccC
Q 036411 11 KILNLGFNFFIDSILPYLNTLTSLTTLNLRYNKIEGSRTKQGICNLKNLLELDLSSNNFEGHLPQCLNNLTHLKVLDISY 90 (487)
Q Consensus 11 ~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~ 90 (487)
..+.+++|.+. ...+.+.+++.|.+|+++++... ..+.+++.+..++.++.+.+++. .+|+.+..+++|.++++++
T Consensus 48 ~~lils~N~l~-~l~~dl~nL~~l~vl~~~~n~l~--~lp~aig~l~~l~~l~vs~n~ls-~lp~~i~s~~~l~~l~~s~ 123 (565)
T KOG0472|consen 48 QKLILSHNDLE-VLREDLKNLACLTVLNVHDNKLS--QLPAAIGELEALKSLNVSHNKLS-ELPEQIGSLISLVKLDCSS 123 (565)
T ss_pred hhhhhccCchh-hccHhhhcccceeEEEeccchhh--hCCHHHHHHHHHHHhhcccchHh-hccHHHhhhhhhhhhhccc
Confidence 34444444332 22233445555555555555554 33444555555555555555554 4555555555555555555
Q ss_pred ccccCCccccccCCCCCcEEeccccccCcchhHHHhhccccceEEEeccCCCccccccccccCCCCCceeeccccccccc
Q 036411 91 NQLSGNFPSVLTNLTSLEYLDLSFIDFQGTFLINSLANHSKLEVLVLSSGNDMLQVKTENWLPTYPLKVLQLSHCHLNVN 170 (487)
Q Consensus 91 ~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~ 170 (487)
+.+. .+++.++.+-.+..++..+|.+.. .+..+..+.++..+++.++ .....++... .++.|++++...+..+.+
T Consensus 124 n~~~-el~~~i~~~~~l~dl~~~~N~i~s--lp~~~~~~~~l~~l~~~~n-~l~~l~~~~i-~m~~L~~ld~~~N~L~tl 198 (565)
T KOG0472|consen 124 NELK-ELPDSIGRLLDLEDLDATNNQISS--LPEDMVNLSKLSKLDLEGN-KLKALPENHI-AMKRLKHLDCNSNLLETL 198 (565)
T ss_pred ccee-ecCchHHHHhhhhhhhcccccccc--CchHHHHHHHHHHhhcccc-chhhCCHHHH-HHHHHHhcccchhhhhcC
Confidence 5554 244445555555555555555432 2233444444444444332 2222222222 245566666666666666
Q ss_pred ccccccCCcccEEeCCCCcccCCcchHhhhcCCCCcEEEcccCCCCCCCCCCCCcCCCCCcEEEccCCcccccCCccccc
Q 036411 171 SSFLLHQHHLKFLDLSHNQLVGNFPTWLLQNNTGLEVLILWNNSFSGILPRLPNAKYDKLRHLDISTNNFSGKLPENLGI 250 (487)
Q Consensus 171 ~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~ 250 (487)
|..++.+.+|.-|++..|.+. .+|+ |.+|..|..+.++.|.+. +.+......++++..|++..|++. ++|..+..
T Consensus 199 P~~lg~l~~L~~LyL~~Nki~-~lPe--f~gcs~L~Elh~g~N~i~-~lpae~~~~L~~l~vLDLRdNklk-e~Pde~cl 273 (565)
T KOG0472|consen 199 PPELGGLESLELLYLRRNKIR-FLPE--FPGCSLLKELHVGENQIE-MLPAEHLKHLNSLLVLDLRDNKLK-EVPDEICL 273 (565)
T ss_pred ChhhcchhhhHHHHhhhcccc-cCCC--CCccHHHHHHHhcccHHH-hhHHHHhcccccceeeeccccccc-cCchHHHH
Confidence 666666666666666666654 4442 445666666666555544 222223345556666666666665 45554432
Q ss_pred ccCceEEEEccCCCCCCCcchhhhccccCcEEecccccCCCCCchhhhcCCCC--CcEEEC-------CCCcc---C---
Q 036411 251 VFQKLIYLDVSKNSFEGNIPYSISEMKELITLDLSRNNFSGELPRSIFSSCLS--LETLDL-------SNNNF---Y--- 315 (487)
Q Consensus 251 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~--L~~L~l-------~~~~~---~--- 315 (487)
..+|++||+++|.++ ..+..++++ +|++|.+.+|.+. ++..++.+..+. |++|.= +...- +
T Consensus 274 -LrsL~rLDlSNN~is-~Lp~sLgnl-hL~~L~leGNPlr-TiRr~ii~~gT~~vLKyLrs~~~~dglS~se~~~e~~~t 349 (565)
T KOG0472|consen 274 -LRSLERLDLSNNDIS-SLPYSLGNL-HLKFLALEGNPLR-TIRREIISKGTQEVLKYLRSKIKDDGLSQSEGGTETAMT 349 (565)
T ss_pred -hhhhhhhcccCCccc-cCCcccccc-eeeehhhcCCchH-HHHHHHHcccHHHHHHHHHHhhccCCCCCCcccccccCC
Confidence 345666666666665 455556666 5666666666554 443333222110 111110 00000 0
Q ss_pred --CCCCcCCcCCCCccEEEcCCCcccccccccccC--CCcccEEEccCCccCCCchhhhcccccccE-EecCCccccCcc
Q 036411 316 --GQLFPNFMNLTHLSSLRLNNNHFSGKMADGLLS--STLLDVLDVSNNKLSGDIPHWIGNFSVLWL-LLMSENYLQGSI 390 (487)
Q Consensus 316 --~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~--~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~-L~l~~~~~~~~~ 390 (487)
.........+.+.+.|++++-.++....+.|.. ..-...+++++|++. .+|..+..+..+.+ +.++++.++ ..
T Consensus 350 ~~~~~~~~~~~~i~tkiL~~s~~qlt~VPdEVfea~~~~~Vt~VnfskNqL~-elPk~L~~lkelvT~l~lsnn~is-fv 427 (565)
T KOG0472|consen 350 LPSESFPDIYAIITTKILDVSDKQLTLVPDEVFEAAKSEIVTSVNFSKNQLC-ELPKRLVELKELVTDLVLSNNKIS-FV 427 (565)
T ss_pred CCCCcccchhhhhhhhhhcccccccccCCHHHHHHhhhcceEEEecccchHh-hhhhhhHHHHHHHHHHHhhcCccc-cc
Confidence 001111223456777777777776333333322 224778889999886 77777777766544 455655555 77
Q ss_pred hhhhccCcCCcEEeccCCccccccccccCCCcceEEEeeCcccCCcchHhhhccCcceEEeCCCCcccccCcccccccCc
Q 036411 391 PVQLGNLESLEFIDISENGLSVSMVSLSNLSSVKHIYLHNNAINGLIPIALLRSSTLLTLDLRDNKFFGRIPHQINELSN 470 (487)
Q Consensus 391 ~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~ 470 (487)
|..+..+++|..|++++|.+...+..+..+-.|+.|+++.|.|.. .|..+.....++.+-.++|++....+..+.++.+
T Consensus 428 ~~~l~~l~kLt~L~L~NN~Ln~LP~e~~~lv~Lq~LnlS~NrFr~-lP~~~y~lq~lEtllas~nqi~~vd~~~l~nm~n 506 (565)
T KOG0472|consen 428 PLELSQLQKLTFLDLSNNLLNDLPEEMGSLVRLQTLNLSFNRFRM-LPECLYELQTLETLLASNNQIGSVDPSGLKNMRN 506 (565)
T ss_pred hHHHHhhhcceeeecccchhhhcchhhhhhhhhheeccccccccc-chHHHhhHHHHHHHHhccccccccChHHhhhhhh
Confidence 888899999999999999998888888888889999999999985 5777776777888888889986555566999999
Q ss_pred eeEEeccCCccCCCCCC
Q 036411 471 LHFLLLRGNSLQGRIPN 487 (487)
Q Consensus 471 L~~L~l~~~~~~~~~p~ 487 (487)
|..||+.+|.+.+.+|+
T Consensus 507 L~tLDL~nNdlq~IPp~ 523 (565)
T KOG0472|consen 507 LTTLDLQNNDLQQIPPI 523 (565)
T ss_pred cceeccCCCchhhCChh
Confidence 99999999999877663
|
|
| >PLN03210 Resistant to P | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.4e-21 Score=207.50 Aligned_cols=308 Identities=20% Similarity=0.182 Sum_probs=161.0
Q ss_pred CCcEEECCCCccCCCcchhccCCCCccEEeccCccccCCccccccCCCCCcEEeccccccCcchhHHHhhccccceEEEe
Q 036411 58 NLLELDLSSNNFEGHLPQCLNNLTHLKVLDISYNQLSGNFPSVLTNLTSLEYLDLSFIDFQGTFLINSLANHSKLEVLVL 137 (487)
Q Consensus 58 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~l~l 137 (487)
+|+.|++.++.+. .+|..+ ...+|++|++.++.+. .++..+..+++|+.++++++......+ .++.+++|+.|++
T Consensus 590 ~Lr~L~~~~~~l~-~lP~~f-~~~~L~~L~L~~s~l~-~L~~~~~~l~~Lk~L~Ls~~~~l~~ip--~ls~l~~Le~L~L 664 (1153)
T PLN03210 590 KLRLLRWDKYPLR-CMPSNF-RPENLVKLQMQGSKLE-KLWDGVHSLTGLRNIDLRGSKNLKEIP--DLSMATNLETLKL 664 (1153)
T ss_pred ccEEEEecCCCCC-CCCCcC-CccCCcEEECcCcccc-ccccccccCCCCCEEECCCCCCcCcCC--ccccCCcccEEEe
Confidence 3555555554443 333333 2345555555555444 233344445555555555443221111 2444555555555
Q ss_pred ccCCCccccccccccCCCCCceeecccccc-cccccccccCCcccEEeCCCCcccCCcchHhhhcCCCCcEEEcccCCCC
Q 036411 138 SSGNDMLQVKTENWLPTYPLKVLQLSHCHL-NVNSSFLLHQHHLKFLDLSHNQLVGNFPTWLLQNNTGLEVLILWNNSFS 216 (487)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~-~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 216 (487)
.+|.....++. .+..+++|+.|++++|.. ..++... .+++|+.|++++|.....++. ...+|+.|.+.++.+.
T Consensus 665 ~~c~~L~~lp~-si~~L~~L~~L~L~~c~~L~~Lp~~i-~l~sL~~L~Lsgc~~L~~~p~----~~~nL~~L~L~~n~i~ 738 (1153)
T PLN03210 665 SDCSSLVELPS-SIQYLNKLEDLDMSRCENLEILPTGI-NLKSLYRLNLSGCSRLKSFPD----ISTNISWLDLDETAIE 738 (1153)
T ss_pred cCCCCccccch-hhhccCCCCEEeCCCCCCcCccCCcC-CCCCCCEEeCCCCCCcccccc----ccCCcCeeecCCCccc
Confidence 55444433332 233444555555555432 3333322 455666666666543323332 2345666666666554
Q ss_pred CCCCCCCCcCCCCCcEEEccCCcccc------cCCcccccccCceEEEEccCCCCCCCcchhhhccccCcEEecccccCC
Q 036411 217 GILPRLPNAKYDKLRHLDISTNNFSG------KLPENLGIVFQKLIYLDVSKNSFEGNIPYSISEMKELITLDLSRNNFS 290 (487)
Q Consensus 217 ~~~~~~~~~~~~~L~~L~l~~~~~~~------~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 290 (487)
..+.. ..+++|+.|.+.++.... ..+......+++|+.|++++|......+..+.++++|+.|++++|...
T Consensus 739 ~lP~~---~~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L 815 (1153)
T PLN03210 739 EFPSN---LRLENLDELILCEMKSEKLWERVQPLTPLMTMLSPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINL 815 (1153)
T ss_pred ccccc---ccccccccccccccchhhccccccccchhhhhccccchheeCCCCCCccccChhhhCCCCCCEEECCCCCCc
Confidence 33221 134555655555432110 011111223457777777777665566667777777777777776544
Q ss_pred CCCchhhhcCCCCCcEEECCCCccCCCCCcCCcCCCCccEEEcCCCcccccccccccCCCcccEEEccCCccCCCchhhh
Q 036411 291 GELPRSIFSSCLSLETLDLSNNNFYGQLFPNFMNLTHLSSLRLNNNHFSGKMADGLLSSTLLDVLDVSNNKLSGDIPHWI 370 (487)
Q Consensus 291 ~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~ 370 (487)
+.+|... .+++|+.|++++|.....++. ..++|+.|++.+|.+. ..+..+..+++|+.|++++|.-...++...
T Consensus 816 ~~LP~~~--~L~sL~~L~Ls~c~~L~~~p~---~~~nL~~L~Ls~n~i~-~iP~si~~l~~L~~L~L~~C~~L~~l~~~~ 889 (1153)
T PLN03210 816 ETLPTGI--NLESLESLDLSGCSRLRTFPD---ISTNISDLNLSRTGIE-EVPWWIEKFSNLSFLDMNGCNNLQRVSLNI 889 (1153)
T ss_pred CeeCCCC--CccccCEEECCCCCccccccc---cccccCEeECCCCCCc-cChHHHhcCCCCCEEECCCCCCcCccCccc
Confidence 4666543 467777777777754333322 1356777777777665 455556666777777777764433455555
Q ss_pred cccccccEEecCCcc
Q 036411 371 GNFSVLWLLLMSENY 385 (487)
Q Consensus 371 ~~~~~L~~L~l~~~~ 385 (487)
..++.|+.+++++|.
T Consensus 890 ~~L~~L~~L~l~~C~ 904 (1153)
T PLN03210 890 SKLKHLETVDFSDCG 904 (1153)
T ss_pred ccccCCCeeecCCCc
Confidence 666666666666663
|
syringae 6; Provisional |
| >PLN03210 Resistant to P | Back alignment and domain information |
|---|
Probab=99.88 E-value=4e-21 Score=203.99 Aligned_cols=343 Identities=21% Similarity=0.198 Sum_probs=220.3
Q ss_pred HHhhccccceEEEeccCC-----CccccccccccCC-CCCceeecccccccccccccccCCcccEEeCCCCcccCCcchH
Q 036411 124 NSLANHSKLEVLVLSSGN-----DMLQVKTENWLPT-YPLKVLQLSHCHLNVNSSFLLHQHHLKFLDLSHNQLVGNFPTW 197 (487)
Q Consensus 124 ~~~~~~~~L~~l~l~~~~-----~~~~~~~~~~~~~-~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~ 197 (487)
..|..|++|+.+.+.... ......+..+... ..|+.|.+.++.+..+|..+ ...+|+.|++.++.+. .++..
T Consensus 552 ~aF~~m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~~l~~lP~~f-~~~~L~~L~L~~s~l~-~L~~~ 629 (1153)
T PLN03210 552 NAFKGMRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKYPLRCMPSNF-RPENLVKLQMQGSKLE-KLWDG 629 (1153)
T ss_pred HHHhcCccccEEEEecccccccccceeecCcchhhcCcccEEEEecCCCCCCCCCcC-CccCCcEEECcCcccc-ccccc
Confidence 455666666666663321 0111111122222 35777777777666666655 4567777777777665 34333
Q ss_pred hhhcCCCCcEEEcccCCCCCCCCCCCCcCCCCCcEEEccCCcccccCCcccccccCceEEEEccCCCCCCCcchhhhccc
Q 036411 198 LLQNNTGLEVLILWNNSFSGILPRLPNAKYDKLRHLDISTNNFSGKLPENLGIVFQKLIYLDVSKNSFEGNIPYSISEMK 277 (487)
Q Consensus 198 ~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~ 277 (487)
. ..+++|+.++++++......+. ...+++|+.|++.+|.....+|..+. .+++|+.|++++|......+... +++
T Consensus 630 ~-~~l~~Lk~L~Ls~~~~l~~ip~--ls~l~~Le~L~L~~c~~L~~lp~si~-~L~~L~~L~L~~c~~L~~Lp~~i-~l~ 704 (1153)
T PLN03210 630 V-HSLTGLRNIDLRGSKNLKEIPD--LSMATNLETLKLSDCSSLVELPSSIQ-YLNKLEDLDMSRCENLEILPTGI-NLK 704 (1153)
T ss_pred c-ccCCCCCEEECCCCCCcCcCCc--cccCCcccEEEecCCCCccccchhhh-ccCCCCEEeCCCCCCcCccCCcC-CCC
Confidence 2 3567777777776543333332 35567777888877765445555544 34677888887775444444433 577
Q ss_pred cCcEEecccccCCCCCchhhhcCCCCCcEEECCCCccCCCCCcCCcCCCCccEEEcCCCcccc-------cccccccCCC
Q 036411 278 ELITLDLSRNNFSGELPRSIFSSCLSLETLDLSNNNFYGQLFPNFMNLTHLSSLRLNNNHFSG-------KMADGLLSST 350 (487)
Q Consensus 278 ~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~-------~~~~~~~~~~ 350 (487)
+|+.|++++|.....+|. ...+|+.|++.++.+.. .+..+ .+++|+.|.+.++.... ..+.....++
T Consensus 705 sL~~L~Lsgc~~L~~~p~----~~~nL~~L~L~~n~i~~-lP~~~-~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~ 778 (1153)
T PLN03210 705 SLYRLNLSGCSRLKSFPD----ISTNISWLDLDETAIEE-FPSNL-RLENLDELILCEMKSEKLWERVQPLTPLMTMLSP 778 (1153)
T ss_pred CCCEEeCCCCCCcccccc----ccCCcCeeecCCCcccc-ccccc-cccccccccccccchhhccccccccchhhhhccc
Confidence 788888877765434443 24577788887777643 23322 46677777776643210 1111222356
Q ss_pred cccEEEccCCccCCCchhhhcccccccEEecCCccccCcchhhhccCcCCcEEeccCCccccccccccCCCcceEEEeeC
Q 036411 351 LLDVLDVSNNKLSGDIPHWIGNFSVLWLLLMSENYLQGSIPVQLGNLESLEFIDISENGLSVSMVSLSNLSSVKHIYLHN 430 (487)
Q Consensus 351 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~ 430 (487)
+|+.|++++|.....+|..++++++|+.|++++|...+.+|..+ .+++|+.|++++|......+. ..++|++|++.+
T Consensus 779 sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~-~L~sL~~L~Ls~c~~L~~~p~--~~~nL~~L~Ls~ 855 (1153)
T PLN03210 779 SLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTGI-NLESLESLDLSGCSRLRTFPD--ISTNISDLNLSR 855 (1153)
T ss_pred cchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCCCC-CccccCEEECCCCCccccccc--cccccCEeECCC
Confidence 88899998887766788888889999999998886544566554 678899999998864322221 236788999999
Q ss_pred cccCCcchHhhhccCcceEEeCCCCcccccCcccccccCceeEEeccCCccCC
Q 036411 431 NAINGLIPIALLRSSTLLTLDLRDNKFFGRIPHQINELSNLHFLLLRGNSLQG 483 (487)
Q Consensus 431 ~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~ 483 (487)
|.++. .|.++..+++|+.|++++|.-...++..+..+++|+.+++++|+-..
T Consensus 856 n~i~~-iP~si~~l~~L~~L~L~~C~~L~~l~~~~~~L~~L~~L~l~~C~~L~ 907 (1153)
T PLN03210 856 TGIEE-VPWWIEKFSNLSFLDMNGCNNLQRVSLNISKLKHLETVDFSDCGALT 907 (1153)
T ss_pred CCCcc-ChHHHhcCCCCCEEECCCCCCcCccCcccccccCCCeeecCCCcccc
Confidence 88875 47778888999999999887666777778888899999999887443
|
syringae 6; Provisional |
| >KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.87 E-value=6.7e-25 Score=190.55 Aligned_cols=413 Identities=20% Similarity=0.148 Sum_probs=254.0
Q ss_pred CCcEEEccCccccCCcccccccCCCCCcEEECCCCccCCCcchhccCCCCccEEeccC-ccccCCccccccCCCCCcEEe
Q 036411 33 SLTTLNLRYNKIEGSRTKQGICNLKNLLELDLSSNNFEGHLPQCLNNLTHLKVLDISY-NQLSGNFPSVLTNLTSLEYLD 111 (487)
Q Consensus 33 ~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~-~~~~~~~~~~~~~~~~L~~L~ 111 (487)
.-..+++..|.|+ .+++.+|+.+++|+.|||+.|.|+.+.|.+|.++++|..|-+++ |+|++.....|..+..++.|.
T Consensus 68 ~tveirLdqN~I~-~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqrLl 146 (498)
T KOG4237|consen 68 ETVEIRLDQNQIS-SIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQRLL 146 (498)
T ss_pred cceEEEeccCCcc-cCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHHHHh
Confidence 5667888888886 56778899999999999999999888889999999888887777 788877777888999999998
Q ss_pred ccccccCcchhHHHhhccccceEEEeccCCCccccccccccCCCCCceeecccccccccccccccCCcccEEeCCCCccc
Q 036411 112 LSFIDFQGTFLINSLANHSKLEVLVLSSGNDMLQVKTENWLPTYPLKVLQLSHCHLNVNSSFLLHQHHLKFLDLSHNQLV 191 (487)
Q Consensus 112 l~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 191 (487)
+.-+++. ......+..+++++.|.+.+ ..+..+....+.+...++++.+..+.+.. ..+++.+.....- +
T Consensus 147 lNan~i~-Cir~~al~dL~~l~lLslyD-n~~q~i~~~tf~~l~~i~tlhlA~np~ic----dCnL~wla~~~a~-~--- 216 (498)
T KOG4237|consen 147 LNANHIN-CIRQDALRDLPSLSLLSLYD-NKIQSICKGTFQGLAAIKTLHLAQNPFIC----DCNLPWLADDLAM-N--- 216 (498)
T ss_pred cChhhhc-chhHHHHHHhhhcchhcccc-hhhhhhccccccchhccchHhhhcCcccc----ccccchhhhHHhh-c---
Confidence 8887776 45567888888888887743 33444555566666677777666554210 1111111111000 0
Q ss_pred CCcchHhhhcCCCCcEEEcccCCCCCCCCCCCCcCCCCCcEEEccCCcccccCCcccccccCceEEEEccCCCCCCCcch
Q 036411 192 GNFPTWLLQNNTGLEVLILWNNSFSGILPRLPNAKYDKLRHLDISTNNFSGKLPENLGIVFQKLIYLDVSKNSFEGNIPY 271 (487)
Q Consensus 192 ~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~ 271 (487)
...++++.-.....+.+..+.......+......+.+--.+.+......|..-+..+++|+.|++++|.++++-..
T Consensus 217 ----~ietsgarc~~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~~i~~~ 292 (498)
T KOG4237|consen 217 ----PIETSGARCVSPYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKITRIEDG 292 (498)
T ss_pred ----hhhcccceecchHHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCccchhhhh
Confidence 0001111111112222222222222111111111111112233333344555566778899999999998888888
Q ss_pred hhhccccCcEEecccccCCCCCchhhhcCCCCCcEEECCCCccCCCCCcCCcCCCCccEEEcCCCcccccc-cccc----
Q 036411 272 SISEMKELITLDLSRNNFSGELPRSIFSSCLSLETLDLSNNNFYGQLFPNFMNLTHLSSLRLNNNHFSGKM-ADGL---- 346 (487)
Q Consensus 272 ~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~-~~~~---- 346 (487)
+|.....+++|.+.+|++. .+...+|.++..|+.|++.+|+++...+.+|..+.+|.+|.+-.|++--.- ...+
T Consensus 293 aFe~~a~l~eL~L~~N~l~-~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~~l~~l~l~~Np~~CnC~l~wl~~Wl 371 (498)
T KOG4237|consen 293 AFEGAAELQELYLTRNKLE-FVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQTLFSLSTLNLLSNPFNCNCRLAWLGEWL 371 (498)
T ss_pred hhcchhhhhhhhcCcchHH-HHHHHhhhccccceeeeecCCeeEEEecccccccceeeeeehccCcccCccchHHHHHHH
Confidence 8888889999999999887 788888888999999999999888777888888888888888877753100 0000
Q ss_pred -----------cCCCcccEEEccCCccCCCchhhhcccccccEEecCCccccCcchhhhccCcCCcEE-eccCCcccccc
Q 036411 347 -----------LSSTLLDVLDVSNNKLSGDIPHWIGNFSVLWLLLMSENYLQGSIPVQLGNLESLEFI-DISENGLSVSM 414 (487)
Q Consensus 347 -----------~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l-~l~~~~~~~~~ 414 (487)
+....++.+.+++..+.++- |..-++.... ..+..-..++.+.++ ..++..++..+
T Consensus 372 r~~~~~~~~~Cq~p~~~~~~~~~dv~~~~~~------c~~~ee~~~~------~s~~cP~~c~c~~tVvRcSnk~lk~lp 439 (498)
T KOG4237|consen 372 RKKSVVGNPRCQSPGFVRQIPISDVAFGDFR------CGGPEELGCL------TSSPCPPPCTCLDTVVRCSNKLLKLLP 439 (498)
T ss_pred hhCCCCCCCCCCCCchhccccchhccccccc------cCCccccCCC------CCCCCCCCcchhhhhHhhcccchhhcC
Confidence 11113333433333221110 0000000000 011111233344332 33444444444
Q ss_pred ccccCCCcceEEEeeCcccCCcchHhhhccCcceEEeCCCCcccccCcccccccCceeEEeccCC
Q 036411 415 VSLSNLSSVKHIYLHNNAINGLIPIALLRSSTLLTLDLRDNKFFGRIPHQINELSNLHFLLLRGN 479 (487)
Q Consensus 415 ~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~ 479 (487)
..+. ..-.++++.+|.++.+..+ ..++| .+++++|++...--..|.++..|.+|.+++|
T Consensus 440 ~~iP--~d~telyl~gn~~~~vp~~---~~~~l-~~dls~n~i~~Lsn~tf~n~tql~tlilsyn 498 (498)
T KOG4237|consen 440 RGIP--VDVTELYLDGNAITSVPDE---LLRSL-LLDLSNNRISSLSNYTFSNMTQLSTLILSYN 498 (498)
T ss_pred CCCC--chhHHHhcccchhcccCHH---HHhhh-hcccccCceehhhcccccchhhhheeEEecC
Confidence 4443 3567888899999877665 44677 8999999986555567889999999998876
|
|
| >KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.83 E-value=1.5e-22 Score=176.02 Aligned_cols=375 Identities=19% Similarity=0.216 Sum_probs=203.5
Q ss_pred CCcEEECCCCccCCCcchhccCCCCccEEeccCccccCCccccccCCCCCcEEeccc-cccCcchhHHHhhccccceEEE
Q 036411 58 NLLELDLSSNNFEGHLPQCLNNLTHLKVLDISYNQLSGNFPSVLTNLTSLEYLDLSF-IDFQGTFLINSLANHSKLEVLV 136 (487)
Q Consensus 58 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~-~~~~~~~~~~~~~~~~~L~~l~ 136 (487)
.-.+|+|..|+|+...+.+|+.+++|+.|++++|.|+.+.|..|..++++..|-+.+ |+++ ..+...|+.+..++.|.
T Consensus 68 ~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~-~l~k~~F~gL~slqrLl 146 (498)
T KOG4237|consen 68 ETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKIT-DLPKGAFGGLSSLQRLL 146 (498)
T ss_pred cceEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchh-hhhhhHhhhHHHHHHHh
Confidence 455667777777666666677777777777777777766777777777666666655 4444 33444555555554444
Q ss_pred eccCCCccccccccccCCCCCceeecccccc-cccccccccCCcccEEeCCCCcccCCcchHhhhcCCCCcEEEcccCCC
Q 036411 137 LSSGNDMLQVKTENWLPTYPLKVLQLSHCHL-NVNSSFLLHQHHLKFLDLSHNQLVGNFPTWLLQNNTGLEVLILWNNSF 215 (487)
Q Consensus 137 l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~-~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 215 (487)
+ ..+++ ......+..++++..|.+..|.+. .++...+..+.+++.+-+..+++
T Consensus 147 l-------------------------Nan~i~Cir~~al~dL~~l~lLslyDn~~q-~i~~~tf~~l~~i~tlhlA~np~ 200 (498)
T KOG4237|consen 147 L-------------------------NANHINCIRQDALRDLPSLSLLSLYDNKIQ-SICKGTFQGLAAIKTLHLAQNPF 200 (498)
T ss_pred c-------------------------ChhhhcchhHHHHHHhhhcchhcccchhhh-hhccccccchhccchHhhhcCcc
Confidence 4 44443 222334444555555555554443 33333333444444444433332
Q ss_pred CCC-----------CCCCCCcCCCCCcEEEccCCcccccCCcccccccCceEEE---EccCCCCCCC-cchhhhccccCc
Q 036411 216 SGI-----------LPRLPNAKYDKLRHLDISTNNFSGKLPENLGIVFQKLIYL---DVSKNSFEGN-IPYSISEMKELI 280 (487)
Q Consensus 216 ~~~-----------~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L---~l~~~~~~~~-~~~~~~~~~~L~ 280 (487)
... .....++.........+.+..+...-...+. .+++.+ -.+.+..... -...|..+++|+
T Consensus 201 icdCnL~wla~~~a~~~ietsgarc~~p~rl~~~Ri~q~~a~kf~---c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~ 277 (498)
T KOG4237|consen 201 ICDCNLPWLADDLAMNPIETSGARCVSPYRLYYKRINQEDARKFL---CSLESLPSRLSSEDFPDSICPAKCFKKLPNLR 277 (498)
T ss_pred ccccccchhhhHHhhchhhcccceecchHHHHHHHhcccchhhhh---hhHHhHHHhhccccCcCCcChHHHHhhcccce
Confidence 110 0000111222222222222222211111111 112211 1122222222 233577888888
Q ss_pred EEecccccCCCCCchhhhcCCCCCcEEECCCCccCCCCCcCCcCCCCccEEEcCCCcccccccccccCCCcccEEEccCC
Q 036411 281 TLDLSRNNFSGELPRSIFSSCLSLETLDLSNNNFYGQLFPNFMNLTHLSSLRLNNNHFSGKMADGLLSSTLLDVLDVSNN 360 (487)
Q Consensus 281 ~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~ 360 (487)
+|++++|.++ .+....|++...+++|.+.+|++......+|..+..|+.|++++|.++...+..|....+|.+|++-+|
T Consensus 278 ~lnlsnN~i~-~i~~~aFe~~a~l~eL~L~~N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~~l~~l~l~~N 356 (498)
T KOG4237|consen 278 KLNLSNNKIT-RIEDGAFEGAAELQELYLTRNKLEFVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQTLFSLSTLNLLSN 356 (498)
T ss_pred EeccCCCccc-hhhhhhhcchhhhhhhhcCcchHHHHHHHhhhccccceeeeecCCeeEEEecccccccceeeeeehccC
Confidence 8888888887 777788888888888888888876555566778888888888888888777888888888888888776
Q ss_pred ccCC-----CchhhhcccccccEEecCCccccCcchhhhccCcCCcEEeccCCccc-------------cccccccCCCc
Q 036411 361 KLSG-----DIPHWIGNFSVLWLLLMSENYLQGSIPVQLGNLESLEFIDISENGLS-------------VSMVSLSNLSS 422 (487)
Q Consensus 361 ~~~~-----~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~-------------~~~~~~~~~~~ 422 (487)
.+.. ....|+..- ...+..+. ++-..++.+.+++..+. .....-..++.
T Consensus 357 p~~CnC~l~wl~~Wlr~~-----------~~~~~~~C--q~p~~~~~~~~~dv~~~~~~c~~~ee~~~~~s~~cP~~c~c 423 (498)
T KOG4237|consen 357 PFNCNCRLAWLGEWLRKK-----------SVVGNPRC--QSPGFVRQIPISDVAFGDFRCGGPEELGCLTSSPCPPPCTC 423 (498)
T ss_pred cccCccchHHHHHHHhhC-----------CCCCCCCC--CCCchhccccchhccccccccCCccccCCCCCCCCCCCcch
Confidence 5532 222222211 10101110 01112333444433221 11111224555
Q ss_pred ceEEEeeCcccCCcchHhhhccCcceEEeCCCCcccccCcccccccCceeEEeccCCccC
Q 036411 423 VKHIYLHNNAINGLIPIALLRSSTLLTLDLRDNKFFGRIPHQINELSNLHFLLLRGNSLQ 482 (487)
Q Consensus 423 L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~ 482 (487)
+..+.=-+|+..+..|..++ ..-..+++.+|.++ .+|.. .+.+| .+|+++|+|+
T Consensus 424 ~~tVvRcSnk~lk~lp~~iP--~d~telyl~gn~~~-~vp~~--~~~~l-~~dls~n~i~ 477 (498)
T KOG4237|consen 424 LDTVVRCSNKLLKLLPRGIP--VDVTELYLDGNAIT-SVPDE--LLRSL-LLDLSNNRIS 477 (498)
T ss_pred hhhhHhhcccchhhcCCCCC--chhHHHhcccchhc-ccCHH--HHhhh-hcccccCcee
Confidence 65544334444445555554 56788999999996 45544 67778 8999999976
|
|
| >PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional | Back alignment and domain information |
|---|
Probab=99.80 E-value=1.4e-18 Score=171.67 Aligned_cols=260 Identities=26% Similarity=0.356 Sum_probs=151.2
Q ss_pred ccEEeCCCCcccCCcchHhhhcCCCCcEEEcccCCCCCCCCCCCCcCCCCCcEEEccCCcccccCCcccccccCceEEEE
Q 036411 180 LKFLDLSHNQLVGNFPTWLLQNNTGLEVLILWNNSFSGILPRLPNAKYDKLRHLDISTNNFSGKLPENLGIVFQKLIYLD 259 (487)
Q Consensus 180 L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~ 259 (487)
-..|+++.+.++ .+|..+. ++++.|.+.+|.++.... .+++|+.|++++|+++ .+|. .+++|+.|+
T Consensus 203 ~~~LdLs~~~Lt-sLP~~l~---~~L~~L~L~~N~Lt~LP~-----lp~~Lk~LdLs~N~Lt-sLP~----lp~sL~~L~ 268 (788)
T PRK15387 203 NAVLNVGESGLT-TLPDCLP---AHITTLVIPDNNLTSLPA-----LPPELRTLEVSGNQLT-SLPV----LPPGLLELS 268 (788)
T ss_pred CcEEEcCCCCCC-cCCcchh---cCCCEEEccCCcCCCCCC-----CCCCCcEEEecCCccC-cccC----cccccceee
Confidence 445666666655 4554432 356666666666554321 2356777777776665 3343 235677777
Q ss_pred ccCCCCCCCcchhhhccccCcEEecccccCCCCCchhhhcCCCCCcEEECCCCccCCCCCcCCcCCCCccEEEcCCCccc
Q 036411 260 VSKNSFEGNIPYSISEMKELITLDLSRNNFSGELPRSIFSSCLSLETLDLSNNNFYGQLFPNFMNLTHLSSLRLNNNHFS 339 (487)
Q Consensus 260 l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 339 (487)
+++|.+. .++. ..++|+.|++++|.+. .+|. .+++|+.|++++|.+.+. +. ....|+.|.+.+|.++
T Consensus 269 Ls~N~L~-~Lp~---lp~~L~~L~Ls~N~Lt-~LP~----~p~~L~~LdLS~N~L~~L-p~---lp~~L~~L~Ls~N~L~ 335 (788)
T PRK15387 269 IFSNPLT-HLPA---LPSGLCKLWIFGNQLT-SLPV----LPPGLQELSVSDNQLASL-PA---LPSELCKLWAYNNQLT 335 (788)
T ss_pred ccCCchh-hhhh---chhhcCEEECcCCccc-cccc----cccccceeECCCCccccC-CC---CcccccccccccCccc
Confidence 7777665 2222 2245666777777666 5553 135677777777766542 11 1234666667776665
Q ss_pred ccccccccCCCcccEEEccCCccCCCchhhhcccccccEEecCCccccCcchhhhccCcCCcEEeccCCccccccccccC
Q 036411 340 GKMADGLLSSTLLDVLDVSNNKLSGDIPHWIGNFSVLWLLLMSENYLQGSIPVQLGNLESLEFIDISENGLSVSMVSLSN 419 (487)
Q Consensus 340 ~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~ 419 (487)
. .+. ...+|+.|++++|++++ +|.. .++|+.|++++|.+. .+|.. ..+|+.|++++|++...+..
T Consensus 336 ~-LP~---lp~~Lq~LdLS~N~Ls~-LP~l---p~~L~~L~Ls~N~L~-~LP~l---~~~L~~LdLs~N~Lt~LP~l--- 400 (788)
T PRK15387 336 S-LPT---LPSGLQELSVSDNQLAS-LPTL---PSELYKLWAYNNRLT-SLPAL---PSGLKELIVSGNRLTSLPVL--- 400 (788)
T ss_pred c-ccc---cccccceEecCCCccCC-CCCC---Ccccceehhhccccc-cCccc---ccccceEEecCCcccCCCCc---
Confidence 2 222 12367777777777663 3332 245666777777666 33432 24577777777776543321
Q ss_pred CCcceEEEeeCcccCCcchHhhhccCcceEEeCCCCcccccCcccccccCceeEEeccCCccCCCCC
Q 036411 420 LSSVKHIYLHNNAINGLIPIALLRSSTLLTLDLRDNKFFGRIPHQINELSNLHFLLLRGNSLQGRIP 486 (487)
Q Consensus 420 ~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~p 486 (487)
.++|+.|++++|.++.+ |.. ..+|+.|++++|+++ .+|..+..+++|+.|++++|++++.+|
T Consensus 401 ~s~L~~LdLS~N~LssI-P~l---~~~L~~L~Ls~NqLt-~LP~sl~~L~~L~~LdLs~N~Ls~~~~ 462 (788)
T PRK15387 401 PSELKELMVSGNRLTSL-PML---PSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTL 462 (788)
T ss_pred ccCCCEEEccCCcCCCC-Ccc---hhhhhhhhhccCccc-ccChHHhhccCCCeEECCCCCCCchHH
Confidence 25677777777777654 322 245677777777775 567777777777777777777776644
|
|
| >PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional | Back alignment and domain information |
|---|
Probab=99.75 E-value=1.8e-17 Score=163.96 Aligned_cols=265 Identities=24% Similarity=0.255 Sum_probs=179.3
Q ss_pred CceeecccccccccccccccCCcccEEeCCCCcccCCcchHhhhcCCCCcEEEcccCCCCCCCCCCCCcCCCCCcEEEcc
Q 036411 157 LKVLQLSHCHLNVNSSFLLHQHHLKFLDLSHNQLVGNFPTWLLQNNTGLEVLILWNNSFSGILPRLPNAKYDKLRHLDIS 236 (487)
Q Consensus 157 L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~ 236 (487)
-..|+++++.++.+|..+. ++|+.|.+.+|.++ .++. ..++|++|++++|.+..... ..++|+.|++.
T Consensus 203 ~~~LdLs~~~LtsLP~~l~--~~L~~L~L~~N~Lt-~LP~----lp~~Lk~LdLs~N~LtsLP~-----lp~sL~~L~Ls 270 (788)
T PRK15387 203 NAVLNVGESGLTTLPDCLP--AHITTLVIPDNNLT-SLPA----LPPELRTLEVSGNQLTSLPV-----LPPGLLELSIF 270 (788)
T ss_pred CcEEEcCCCCCCcCCcchh--cCCCEEEccCCcCC-CCCC----CCCCCcEEEecCCccCcccC-----cccccceeecc
Confidence 4567777777766666543 46788888888776 4543 35778888888887764421 23578888888
Q ss_pred CCcccccCCcccccccCceEEEEccCCCCCCCcchhhhccccCcEEecccccCCCCCchhhhcCCCCCcEEECCCCccCC
Q 036411 237 TNNFSGKLPENLGIVFQKLIYLDVSKNSFEGNIPYSISEMKELITLDLSRNNFSGELPRSIFSSCLSLETLDLSNNNFYG 316 (487)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~ 316 (487)
+|.+. .++. .++.|+.|++++|.++. ++. ..++|+.|++++|.+. .+|.. ..+|+.|++.+|.+.+
T Consensus 271 ~N~L~-~Lp~----lp~~L~~L~Ls~N~Lt~-LP~---~p~~L~~LdLS~N~L~-~Lp~l----p~~L~~L~Ls~N~L~~ 336 (788)
T PRK15387 271 SNPLT-HLPA----LPSGLCKLWIFGNQLTS-LPV---LPPGLQELSVSDNQLA-SLPAL----PSELCKLWAYNNQLTS 336 (788)
T ss_pred CCchh-hhhh----chhhcCEEECcCCcccc-ccc---cccccceeECCCCccc-cCCCC----cccccccccccCcccc
Confidence 88765 3343 23578888888887763 332 2467888888888877 56542 3467778888887764
Q ss_pred CCCcCCcCCCCccEEEcCCCcccccccccccCCCcccEEEccCCccCCCchhhhcccccccEEecCCccccCcchhhhcc
Q 036411 317 QLFPNFMNLTHLSSLRLNNNHFSGKMADGLLSSTLLDVLDVSNNKLSGDIPHWIGNFSVLWLLLMSENYLQGSIPVQLGN 396 (487)
Q Consensus 317 ~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~ 396 (487)
. +. ...+|+.|++++|.+.. .+.. ..+|+.|++++|++.. +|.. .++|+.|++++|.+. ..|..
T Consensus 337 L-P~---lp~~Lq~LdLS~N~Ls~-LP~l---p~~L~~L~Ls~N~L~~-LP~l---~~~L~~LdLs~N~Lt-~LP~l--- 400 (788)
T PRK15387 337 L-PT---LPSGLQELSVSDNQLAS-LPTL---PSELYKLWAYNNRLTS-LPAL---PSGLKELIVSGNRLT-SLPVL--- 400 (788)
T ss_pred c-cc---cccccceEecCCCccCC-CCCC---Ccccceehhhcccccc-Cccc---ccccceEEecCCccc-CCCCc---
Confidence 2 22 12468888888888773 3322 3567788888888763 4432 356888888888877 34432
Q ss_pred CcCCcEEeccCCccccccccccCCCcceEEEeeCcccCCcchHhhhccCcceEEeCCCCcccccCcccccc
Q 036411 397 LESLEFIDISENGLSVSMVSLSNLSSVKHIYLHNNAINGLIPIALLRSSTLLTLDLRDNKFFGRIPHQINE 467 (487)
Q Consensus 397 ~~~L~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~ 467 (487)
.++|+.|++++|+++..+.. ..+|+.|++++|+++. +|..+..+++|+.|++++|++++..+..+.+
T Consensus 401 ~s~L~~LdLS~N~LssIP~l---~~~L~~L~Ls~NqLt~-LP~sl~~L~~L~~LdLs~N~Ls~~~~~~L~~ 467 (788)
T PRK15387 401 PSELKELMVSGNRLTSLPML---PSGLLSLSVYRNQLTR-LPESLIHLSSETTVNLEGNPLSERTLQALRE 467 (788)
T ss_pred ccCCCEEEccCCcCCCCCcc---hhhhhhhhhccCcccc-cChHHhhccCCCeEECCCCCCCchHHHHHHH
Confidence 25788888888888654432 3467888888888885 4666778888888999888887766665533
|
|
| >PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional | Back alignment and domain information |
|---|
Probab=99.72 E-value=6.4e-17 Score=161.04 Aligned_cols=119 Identities=25% Similarity=0.355 Sum_probs=52.1
Q ss_pred cccEEEccCCccCCCchhhhcccccccEEecCCccccCcchhhhccCcCCcEEeccCCccccccccccCCCcceEEEeeC
Q 036411 351 LLDVLDVSNNKLSGDIPHWIGNFSVLWLLLMSENYLQGSIPVQLGNLESLEFIDISENGLSVSMVSLSNLSSVKHIYLHN 430 (487)
Q Consensus 351 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~ 430 (487)
+|+.|++++|+++. +|..+ .++|+.|++++|.++ .+|..+. ++|+.|++++|+++..+..+ .++|+.|++++
T Consensus 305 sL~~L~Ls~N~Lt~-LP~~l--~~sL~~L~Ls~N~Lt-~LP~~l~--~sL~~L~Ls~N~L~~LP~~l--p~~L~~LdLs~ 376 (754)
T PRK15370 305 GITHLNVQSNSLTA-LPETL--PPGLKTLEAGENALT-SLPASLP--PELQVLDVSKNQITVLPETL--PPTITTLDVSR 376 (754)
T ss_pred hHHHHHhcCCcccc-CCccc--cccceeccccCCccc-cCChhhc--CcccEEECCCCCCCcCChhh--cCCcCEEECCC
Confidence 34445555554442 22211 134555555555444 2333332 45555555555544333222 14455555555
Q ss_pred cccCCcchHhhhccCcceEEeCCCCcccccCcc----cccccCceeEEeccCCcc
Q 036411 431 NAINGLIPIALLRSSTLLTLDLRDNKFFGRIPH----QINELSNLHFLLLRGNSL 481 (487)
Q Consensus 431 ~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~----~l~~l~~L~~L~l~~~~~ 481 (487)
|.++.. |..+. .+|+.|++++|++. .+|+ ....++.+..|++.+||+
T Consensus 377 N~Lt~L-P~~l~--~sL~~LdLs~N~L~-~LP~sl~~~~~~~~~l~~L~L~~Npl 427 (754)
T PRK15370 377 NALTNL-PENLP--AALQIMQASRNNLV-RLPESLPHFRGEGPQPTRIIVEYNPF 427 (754)
T ss_pred CcCCCC-CHhHH--HHHHHHhhccCCcc-cCchhHHHHhhcCCCccEEEeeCCCc
Confidence 555533 22222 24555555555553 2232 222335555555555554
|
|
| >cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily | Back alignment and domain information |
|---|
Probab=99.72 E-value=5.7e-18 Score=156.95 Aligned_cols=273 Identities=25% Similarity=0.262 Sum_probs=183.8
Q ss_pred EEcccCCCCCCCCCCCCcCCCCCcEEEccCCcccccCCccc---ccccCceEEEEccCCCCCC------Ccchhhhcccc
Q 036411 208 LILWNNSFSGILPRLPNAKYDKLRHLDISTNNFSGKLPENL---GIVFQKLIYLDVSKNSFEG------NIPYSISEMKE 278 (487)
Q Consensus 208 L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~---~~~~~~L~~L~l~~~~~~~------~~~~~~~~~~~ 278 (487)
|++.++.+........+..++.++.+++.++.+++.....+ ....+.+++++++++.+.. .....+..+++
T Consensus 3 l~L~~~~l~~~~~~~~~~~l~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~ 82 (319)
T cd00116 3 LSLKGELLKTERATELLPKLLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCG 82 (319)
T ss_pred cccccCcccccchHHHHHHHhhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcCc
Confidence 44555544422222233556679999999998754322222 2234569999999987752 12335666889
Q ss_pred CcEEecccccCCCCCchhhhcCCC---CCcEEECCCCccCCC----CCcCCcCC-CCccEEEcCCCccccc----ccccc
Q 036411 279 LITLDLSRNNFSGELPRSIFSSCL---SLETLDLSNNNFYGQ----LFPNFMNL-THLSSLRLNNNHFSGK----MADGL 346 (487)
Q Consensus 279 L~~L~l~~~~~~~~~~~~~~~~~~---~L~~L~l~~~~~~~~----~~~~~~~~-~~L~~L~l~~~~~~~~----~~~~~ 346 (487)
|+.|++++|.+.+..+. .+..+. +|++|++++|.+.+. ....+..+ ++|++|++.+|.+++. ....+
T Consensus 83 L~~L~l~~~~~~~~~~~-~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~ 161 (319)
T cd00116 83 LQELDLSDNALGPDGCG-VLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKAL 161 (319)
T ss_pred eeEEEccCCCCChhHHH-HHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHHH
Confidence 99999999988633332 333344 499999999987632 22234455 8899999999988732 23345
Q ss_pred cCCCcccEEEccCCccCCC----chhhhcccccccEEecCCccccCcc----hhhhccCcCCcEEeccCCcccc-ccccc
Q 036411 347 LSSTLLDVLDVSNNKLSGD----IPHWIGNFSVLWLLLMSENYLQGSI----PVQLGNLESLEFIDISENGLSV-SMVSL 417 (487)
Q Consensus 347 ~~~~~L~~L~l~~~~~~~~----~~~~~~~~~~L~~L~l~~~~~~~~~----~~~~~~~~~L~~l~l~~~~~~~-~~~~~ 417 (487)
..+++|++|++++|.+.+. ++..+..+++|++|++++|.+.+.. ...+..+++|+.|++++|++.. ....+
T Consensus 162 ~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~~~~~~~l 241 (319)
T cd00116 162 RANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLTDAGAAAL 241 (319)
T ss_pred HhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCcCchHHHHHH
Confidence 5667899999999988743 2334556679999999999876432 3345678899999999998752 11111
Q ss_pred c-----CCCcceEEEeeCcccCCc----chHhhhccCcceEEeCCCCccccc----Cccccccc-CceeEEeccCCcc
Q 036411 418 S-----NLSSVKHIYLHNNAINGL----IPIALLRSSTLLTLDLRDNKFFGR----IPHQINEL-SNLHFLLLRGNSL 481 (487)
Q Consensus 418 ~-----~~~~L~~L~l~~~~~~~~----~~~~~~~~~~L~~L~l~~~~~~~~----~~~~l~~l-~~L~~L~l~~~~~ 481 (487)
. ..+.|++|++.+|.+++. ....+..+++|+.+++++|.++.. ....+... +.|+++++.+||+
T Consensus 242 ~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~l~l~~N~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 319 (319)
T cd00116 242 ASALLSPNISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGNKFGEEGAQLLAESLLEPGNELESLWVKDDSF 319 (319)
T ss_pred HHHHhccCCCceEEEccCCCCCcHHHHHHHHHHhcCCCccEEECCCCCCcHHHHHHHHHHHhhcCCchhhcccCCCCC
Confidence 1 247899999999988743 234456668899999999998644 33445555 7999999998875
|
LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1). |
| >cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily | Back alignment and domain information |
|---|
Probab=99.71 E-value=2.1e-18 Score=159.82 Aligned_cols=275 Identities=25% Similarity=0.230 Sum_probs=174.0
Q ss_pred EEeCCCCcccCCcchHhhhcCCCCcEEEcccCCCCCCCC---CCCCcCCCCCcEEEccCCcccc--c----CCccccccc
Q 036411 182 FLDLSHNQLVGNFPTWLLQNNTGLEVLILWNNSFSGILP---RLPNAKYDKLRHLDISTNNFSG--K----LPENLGIVF 252 (487)
Q Consensus 182 ~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~---~~~~~~~~~L~~L~l~~~~~~~--~----~~~~~~~~~ 252 (487)
.|++.++.+.+......+..++.|+.+.+.++.+..... .......++++.+++.++.+.. . ++..+ ...
T Consensus 2 ~l~L~~~~l~~~~~~~~~~~l~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l-~~~ 80 (319)
T cd00116 2 QLSLKGELLKTERATELLPKLLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGL-TKG 80 (319)
T ss_pred ccccccCcccccchHHHHHHHhhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHH-Hhc
Confidence 456666666655555566677778888888887643211 0022455668888888776541 1 11112 224
Q ss_pred CceEEEEccCCCCCCCcchhhhcccc---CcEEecccccCCCCCch---hhhcCC-CCCcEEECCCCccCCC----CCcC
Q 036411 253 QKLIYLDVSKNSFEGNIPYSISEMKE---LITLDLSRNNFSGELPR---SIFSSC-LSLETLDLSNNNFYGQ----LFPN 321 (487)
Q Consensus 253 ~~L~~L~l~~~~~~~~~~~~~~~~~~---L~~L~l~~~~~~~~~~~---~~~~~~-~~L~~L~l~~~~~~~~----~~~~ 321 (487)
++|++|++++|.+....+..+..+.. |+.|++++|.+.+.... ..+..+ ++|+.+++.+|.+.+. ....
T Consensus 81 ~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~ 160 (319)
T cd00116 81 CGLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKA 160 (319)
T ss_pred CceeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHH
Confidence 68888888888876544444444444 88888888887632111 123445 7888888888887632 2233
Q ss_pred CcCCCCccEEEcCCCcccccc----cccccCCCcccEEEccCCccCCC----chhhhcccccccEEecCCccccCcchhh
Q 036411 322 FMNLTHLSSLRLNNNHFSGKM----ADGLLSSTLLDVLDVSNNKLSGD----IPHWIGNFSVLWLLLMSENYLQGSIPVQ 393 (487)
Q Consensus 322 ~~~~~~L~~L~l~~~~~~~~~----~~~~~~~~~L~~L~l~~~~~~~~----~~~~~~~~~~L~~L~l~~~~~~~~~~~~ 393 (487)
+..++.|++|++.+|.+.+.. ...+...++|+.|++++|.+.+. ....+..+++|++|++++|.+.+.....
T Consensus 161 ~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~~~~~~~ 240 (319)
T cd00116 161 LRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLTDAGAAA 240 (319)
T ss_pred HHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCcCchHHHHH
Confidence 556678888888888876322 22344556888888888877643 2344566788888888888776533333
Q ss_pred hc-----cCcCCcEEeccCCccc-----cccccccCCCcceEEEeeCcccCCcch----Hhhhcc-CcceEEeCCCCcc
Q 036411 394 LG-----NLESLEFIDISENGLS-----VSMVSLSNLSSVKHIYLHNNAINGLIP----IALLRS-STLLTLDLRDNKF 457 (487)
Q Consensus 394 ~~-----~~~~L~~l~l~~~~~~-----~~~~~~~~~~~L~~L~l~~~~~~~~~~----~~~~~~-~~L~~L~l~~~~~ 457 (487)
+. ..+.|++|++++|.++ .....+..+++|+++++++|.+++... ..+... +.|+.+++.++++
T Consensus 241 l~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~l~l~~N~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 319 (319)
T cd00116 241 LASALLSPNISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGNKFGEEGAQLLAESLLEPGNELESLWVKDDSF 319 (319)
T ss_pred HHHHHhccCCCceEEEccCCCCCcHHHHHHHHHHhcCCCccEEECCCCCCcHHHHHHHHHHHhhcCCchhhcccCCCCC
Confidence 22 1368888888888774 223344456788888888888886532 333334 6788888877753
|
LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1). |
| >PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional | Back alignment and domain information |
|---|
Probab=99.69 E-value=1.1e-16 Score=159.34 Aligned_cols=245 Identities=24% Similarity=0.329 Sum_probs=118.6
Q ss_pred CceeecccccccccccccccCCcccEEeCCCCcccCCcchHhhhcCCCCcEEEcccCCCCCCCCCCCCcCCCCCcEEEcc
Q 036411 157 LKVLQLSHCHLNVNSSFLLHQHHLKFLDLSHNQLVGNFPTWLLQNNTGLEVLILWNNSFSGILPRLPNAKYDKLRHLDIS 236 (487)
Q Consensus 157 L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~ 236 (487)
...|.+.++.++.+|..+ .+.++.|++++|.++ .++...+ ++|+.|.+++|.+..... .-.++|+.|+++
T Consensus 180 ~~~L~L~~~~LtsLP~~I--p~~L~~L~Ls~N~Lt-sLP~~l~---~nL~~L~Ls~N~LtsLP~----~l~~~L~~L~Ls 249 (754)
T PRK15370 180 KTELRLKILGLTTIPACI--PEQITTLILDNNELK-SLPENLQ---GNIKTLYANSNQLTSIPA----TLPDTIQEMELS 249 (754)
T ss_pred ceEEEeCCCCcCcCCccc--ccCCcEEEecCCCCC-cCChhhc---cCCCEEECCCCccccCCh----hhhccccEEECc
Confidence 445555555554444432 235666666666555 4444332 356666666555543221 112345666666
Q ss_pred CCcccccCCcccccccCceEEEEccCCCCCCCcchhhhccccCcEEecccccCCCCCchhhhcCCCCCcEEECCCCccCC
Q 036411 237 TNNFSGKLPENLGIVFQKLIYLDVSKNSFEGNIPYSISEMKELITLDLSRNNFSGELPRSIFSSCLSLETLDLSNNNFYG 316 (487)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~ 316 (487)
+|.+. .+|..+ +.+|+.|++++|.+. .++..+ .++|+.|++++|.+. .+|... .++|+.|++++|.+..
T Consensus 250 ~N~L~-~LP~~l---~s~L~~L~Ls~N~L~-~LP~~l--~~sL~~L~Ls~N~Lt-~LP~~l---p~sL~~L~Ls~N~Lt~ 318 (754)
T PRK15370 250 INRIT-ELPERL---PSALQSLDLFHNKIS-CLPENL--PEELRYLSVYDNSIR-TLPAHL---PSGITHLNVQSNSLTA 318 (754)
T ss_pred CCccC-cCChhH---hCCCCEEECcCCccC-cccccc--CCCCcEEECCCCccc-cCcccc---hhhHHHHHhcCCcccc
Confidence 66554 444433 235566666665554 233222 235666666666555 444332 2345556666655542
Q ss_pred CCCcCCcCCCCccEEEcCCCcccccccccccCCCcccEEEccCCccCCCchhhhcccccccEEecCCccccCcchhhhcc
Q 036411 317 QLFPNFMNLTHLSSLRLNNNHFSGKMADGLLSSTLLDVLDVSNNKLSGDIPHWIGNFSVLWLLLMSENYLQGSIPVQLGN 396 (487)
Q Consensus 317 ~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~ 396 (487)
. +..+ .++|+.|.+.+|.++. .+..+ +++|+.|++++|+++ .+|..+. ++|++|++++|.+. ..|..+.
T Consensus 319 L-P~~l--~~sL~~L~Ls~N~Lt~-LP~~l--~~sL~~L~Ls~N~L~-~LP~~lp--~~L~~LdLs~N~Lt-~LP~~l~- 387 (754)
T PRK15370 319 L-PETL--PPGLKTLEAGENALTS-LPASL--PPELQVLDVSKNQIT-VLPETLP--PTITTLDVSRNALT-NLPENLP- 387 (754)
T ss_pred C-Cccc--cccceeccccCCcccc-CChhh--cCcccEEECCCCCCC-cCChhhc--CCcCEEECCCCcCC-CCCHhHH-
Confidence 2 2211 2455556666555542 23222 245566666666554 2333322 45556666665555 3333332
Q ss_pred CcCCcEEeccCCcccccccccc----CCCcceEEEeeCcccC
Q 036411 397 LESLEFIDISENGLSVSMVSLS----NLSSVKHIYLHNNAIN 434 (487)
Q Consensus 397 ~~~L~~l~l~~~~~~~~~~~~~----~~~~L~~L~l~~~~~~ 434 (487)
.+|+.|++++|++...+..+. .++.+..|++.+|.++
T Consensus 388 -~sL~~LdLs~N~L~~LP~sl~~~~~~~~~l~~L~L~~Npls 428 (754)
T PRK15370 388 -AALQIMQASRNNLVRLPESLPHFRGEGPQPTRIIVEYNPFS 428 (754)
T ss_pred -HHHHHHhhccCCcccCchhHHHHhhcCCCccEEEeeCCCcc
Confidence 245555566655543332222 2355555666665554
|
|
| >KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.50 E-value=4.5e-16 Score=120.35 Aligned_cols=178 Identities=23% Similarity=0.382 Sum_probs=125.0
Q ss_pred CCCCcEEECCCCccCCCCCcCCcCCCCccEEEcCCCcccccccccccCCCcccEEEccCCccCCCchhhhcccccccEEe
Q 036411 301 CLSLETLDLSNNNFYGQLFPNFMNLTHLSSLRLNNNHFSGKMADGLLSSTLLDVLDVSNNKLSGDIPHWIGNFSVLWLLL 380 (487)
Q Consensus 301 ~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~ 380 (487)
+.++..|.+++|.++ ..++.++.+.+|+.|++.+|.+. +.+..++.+++|+.|+++-|++. ..|..|+.+|.|+.|+
T Consensus 32 ~s~ITrLtLSHNKl~-~vppnia~l~nlevln~~nnqie-~lp~~issl~klr~lnvgmnrl~-~lprgfgs~p~levld 108 (264)
T KOG0617|consen 32 MSNITRLTLSHNKLT-VVPPNIAELKNLEVLNLSNNQIE-ELPTSISSLPKLRILNVGMNRLN-ILPRGFGSFPALEVLD 108 (264)
T ss_pred hhhhhhhhcccCcee-ecCCcHHHhhhhhhhhcccchhh-hcChhhhhchhhhheecchhhhh-cCccccCCCchhhhhh
Confidence 456677777888776 45566777788888888888876 66777777888888888777765 6777788888888888
Q ss_pred cCCccccC-cchhhhccCcCCcEEeccCCccccccccccCCCcceEEEeeCcccCCcchHhhhccCcceEEeCCCCcccc
Q 036411 381 MSENYLQG-SIPVQLGNLESLEFIDISENGLSVSMVSLSNLSSVKHIYLHNNAINGLIPIALLRSSTLLTLDLRDNKFFG 459 (487)
Q Consensus 381 l~~~~~~~-~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~ 459 (487)
+..|++.. .+|..|..+..|+-|++++|.+...+.....+++|+.|.+++|.+.+. |..+..+..|+.|.+.+|.++
T Consensus 109 ltynnl~e~~lpgnff~m~tlralyl~dndfe~lp~dvg~lt~lqil~lrdndll~l-pkeig~lt~lrelhiqgnrl~- 186 (264)
T KOG0617|consen 109 LTYNNLNENSLPGNFFYMTTLRALYLGDNDFEILPPDVGKLTNLQILSLRDNDLLSL-PKEIGDLTRLRELHIQGNRLT- 186 (264)
T ss_pred ccccccccccCCcchhHHHHHHHHHhcCCCcccCChhhhhhcceeEEeeccCchhhC-cHHHHHHHHHHHHhcccceee-
Confidence 87777653 456667777777777788877777777777777777777777777643 555666677777777777774
Q ss_pred cCccccccc---CceeEEeccCCccCC
Q 036411 460 RIPHQINEL---SNLHFLLLRGNSLQG 483 (487)
Q Consensus 460 ~~~~~l~~l---~~L~~L~l~~~~~~~ 483 (487)
.+|.-++++ .+=+.+.+.+||...
T Consensus 187 vlppel~~l~l~~~k~v~r~E~NPwv~ 213 (264)
T KOG0617|consen 187 VLPPELANLDLVGNKQVMRMEENPWVN 213 (264)
T ss_pred ecChhhhhhhhhhhHHHHhhhhCCCCC
Confidence 444444433 234455555665443
|
|
| >KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.38 E-value=1.2e-14 Score=112.45 Aligned_cols=157 Identities=30% Similarity=0.435 Sum_probs=82.2
Q ss_pred CceEEEEccCCCCCCCcchhhhccccCcEEecccccCCCCCchhhhcCCCCCcEEECCCCccCCCCCcCCcCCCCccEEE
Q 036411 253 QKLIYLDVSKNSFEGNIPYSISEMKELITLDLSRNNFSGELPRSIFSSCLSLETLDLSNNNFYGQLFPNFMNLTHLSSLR 332 (487)
Q Consensus 253 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~ 332 (487)
..++.|.+++|.++ ..+..+..+.+|+.|++++|++. ++|.++ +.+++|+.|++.-|.+. ..+..|..+|.|+.|+
T Consensus 33 s~ITrLtLSHNKl~-~vppnia~l~nlevln~~nnqie-~lp~~i-ssl~klr~lnvgmnrl~-~lprgfgs~p~levld 108 (264)
T KOG0617|consen 33 SNITRLTLSHNKLT-VVPPNIAELKNLEVLNLSNNQIE-ELPTSI-SSLPKLRILNVGMNRLN-ILPRGFGSFPALEVLD 108 (264)
T ss_pred hhhhhhhcccCcee-ecCCcHHHhhhhhhhhcccchhh-hcChhh-hhchhhhheecchhhhh-cCccccCCCchhhhhh
Confidence 34555666666655 34444555566666666666665 555554 45566666666555543 3445555555555555
Q ss_pred cCCCccc-ccccccccCCCcccEEEccCCccCCCchhhhcccccccEEecCCccccCcchhhhccCcCCcEEeccCCccc
Q 036411 333 LNNNHFS-GKMADGLLSSTLLDVLDVSNNKLSGDIPHWIGNFSVLWLLLMSENYLQGSIPVQLGNLESLEFIDISENGLS 411 (487)
Q Consensus 333 l~~~~~~-~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~ 411 (487)
+.+|.+. ...+..|..++.|+.|.+++|.+. .+|...+++++|+-|.+.+|.+. .+|..+..+..|++|.+.+|+++
T Consensus 109 ltynnl~e~~lpgnff~m~tlralyl~dndfe-~lp~dvg~lt~lqil~lrdndll-~lpkeig~lt~lrelhiqgnrl~ 186 (264)
T KOG0617|consen 109 LTYNNLNENSLPGNFFYMTTLRALYLGDNDFE-ILPPDVGKLTNLQILSLRDNDLL-SLPKEIGDLTRLRELHIQGNRLT 186 (264)
T ss_pred ccccccccccCCcchhHHHHHHHHHhcCCCcc-cCChhhhhhcceeEEeeccCchh-hCcHHHHHHHHHHHHhcccceee
Confidence 5555543 123334444445555555555543 44445555555555555555444 44444444555555555555554
Q ss_pred cccc
Q 036411 412 VSMV 415 (487)
Q Consensus 412 ~~~~ 415 (487)
..++
T Consensus 187 vlpp 190 (264)
T KOG0617|consen 187 VLPP 190 (264)
T ss_pred ecCh
Confidence 4333
|
|
| >KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.27 E-value=1.9e-12 Score=112.05 Aligned_cols=135 Identities=21% Similarity=0.277 Sum_probs=84.8
Q ss_pred cCCCcccEEEccCCccCCC----chhhhcccccccEEecCCccccC----cchhhhccCcCCcEEeccCCccc-----cc
Q 036411 347 LSSTLLDVLDVSNNKLSGD----IPHWIGNFSVLWLLLMSENYLQG----SIPVQLGNLESLEFIDISENGLS-----VS 413 (487)
Q Consensus 347 ~~~~~L~~L~l~~~~~~~~----~~~~~~~~~~L~~L~l~~~~~~~----~~~~~~~~~~~L~~l~l~~~~~~-----~~ 413 (487)
...+.|+.+..+.|++... +...++..+.|+.+.+..|.+.. .....+..||+|+.|+|.+|.++ ..
T Consensus 154 ~~~~~Lrv~i~~rNrlen~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~L 233 (382)
T KOG1909|consen 154 ASKPKLRVFICGRNRLENGGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVAL 233 (382)
T ss_pred CCCcceEEEEeeccccccccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHH
Confidence 3456677777777766432 33455666777777777776532 22344667777777777777663 23
Q ss_pred cccccCCCcceEEEeeCcccCCcchHhh-----hccCcceEEeCCCCcccc----cCcccccccCceeEEeccCCcc
Q 036411 414 MVSLSNLSSVKHIYLHNNAINGLIPIAL-----LRSSTLLTLDLRDNKFFG----RIPHQINELSNLHFLLLRGNSL 481 (487)
Q Consensus 414 ~~~~~~~~~L~~L~l~~~~~~~~~~~~~-----~~~~~L~~L~l~~~~~~~----~~~~~l~~l~~L~~L~l~~~~~ 481 (487)
...+...++|++|.+++|.+......++ ...++|+.|.+.+|.++. .+...+...|.|..|++++|.+
T Consensus 234 akaL~s~~~L~El~l~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~l 310 (382)
T KOG1909|consen 234 AKALSSWPHLRELNLGDCLLENEGAIAFVDALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNRL 310 (382)
T ss_pred HHHhcccchheeecccccccccccHHHHHHHHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCcccc
Confidence 4444466777788887777775443332 224677788888877742 2333445677777888887776
|
|
| >KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.20 E-value=4.2e-12 Score=113.15 Aligned_cols=212 Identities=23% Similarity=0.191 Sum_probs=140.2
Q ss_pred cCCCCCcEEEccCccccCCcccccccCCCCCcEEECCCCccCCC--cchhccCCCCccEEeccCccccCCccccc-cCCC
Q 036411 29 NTLTSLTTLNLRYNKIEGSRTKQGICNLKNLLELDLSSNNFEGH--LPQCLNNLTHLKVLDISYNQLSGNFPSVL-TNLT 105 (487)
Q Consensus 29 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~--~~~~~~~l~~L~~L~l~~~~~~~~~~~~~-~~~~ 105 (487)
+++.+|+...+.++.............|++++.||++.|-+..- .......+|+|+.|+++.|.+.....+.. ..++
T Consensus 118 sn~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~ 197 (505)
T KOG3207|consen 118 SNLKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLS 197 (505)
T ss_pred hhHHhhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhh
Confidence 45678888888888876333334567889999999998866422 22345678999999999887653322221 2567
Q ss_pred CCcEEeccccccCcchhHHHhhccccceEEEeccCCCccccccccccCCCCCceeecccccccccc--cccccCCcccEE
Q 036411 106 SLEYLDLSFIDFQGTFLINSLANHSKLEVLVLSSGNDMLQVKTENWLPTYPLKVLQLSHCHLNVNS--SFLLHQHHLKFL 183 (487)
Q Consensus 106 ~L~~L~l~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~--~~~~~~~~L~~L 183 (487)
.|+.|.++.|++........+..+|+|+.|.+..+. ............+.|+.|+++++.+..++ ...+.+++|..|
T Consensus 198 ~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~-~~~~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~~L 276 (505)
T KOG3207|consen 198 HLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANE-IILIKATSTKILQTLQELDLSNNNLIDFDQGYKVGTLPGLNQL 276 (505)
T ss_pred hhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhccc-ccceecchhhhhhHHhhccccCCcccccccccccccccchhhh
Confidence 888999999999877778888899999999987765 22233333445567888888888874444 456678888888
Q ss_pred eCCCCcccCCcchH-----hhhcCCCCcEEEcccCCCCCCCCCCCCcCCCCCcEEEccCCccc
Q 036411 184 DLSHNQLVGNFPTW-----LLQNNTGLEVLILWNNSFSGILPRLPNAKYDKLRHLDISTNNFS 241 (487)
Q Consensus 184 ~l~~~~~~~~~~~~-----~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 241 (487)
+++.+.+.+--... ....++.|++|++..|++.+....-....+++++.+.+..+.+.
T Consensus 277 nls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~~w~sl~~l~~l~nlk~l~~~~n~ln 339 (505)
T KOG3207|consen 277 NLSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNIRDWRSLNHLRTLENLKHLRITLNYLN 339 (505)
T ss_pred hccccCcchhcCCCccchhhhcccccceeeecccCccccccccchhhccchhhhhhccccccc
Confidence 88888765311111 12345677777777776654433333345556666666555443
|
|
| >KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.20 E-value=1.1e-11 Score=105.07 Aligned_cols=225 Identities=23% Similarity=0.271 Sum_probs=141.0
Q ss_pred cCceEEEEccCCC--C------CCCcchhhhccccCcEEecccccCCCCCchhhhcCCCCCcEEECCCCccCCCCCcCCc
Q 036411 252 FQKLIYLDVSKNS--F------EGNIPYSISEMKELITLDLSRNNFSGELPRSIFSSCLSLETLDLSNNNFYGQLFPNFM 323 (487)
Q Consensus 252 ~~~L~~L~l~~~~--~------~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~ 323 (487)
+..|++|.+++.. + ....+..+..+.+|..+.++.|.-. .+..-. ..-|.|+++.+...-... .+.+.
T Consensus 181 ~~~l~~l~vs~~~~p~~~sni~~~~l~f~l~~f~~l~~~~~s~~~~~-~i~~~~-~~kptl~t~~v~~s~~~~--~~~l~ 256 (490)
T KOG1259|consen 181 CTQLVALVVTPVKDPIDRSNIIPNRLSFNLNAFRNLKTLKFSALSTE-NIVDIE-LLKPTLQTICVHNTTIQD--VPSLL 256 (490)
T ss_pred hhheeEEEecCCCCCCccccccccccccchHHhhhhheeeeeccchh-heecee-ecCchhheeeeecccccc--ccccc
Confidence 3456666665432 1 1133445556677777777776544 222211 223667777765543321 12222
Q ss_pred CCCCccEEEcCCCc-ccccccccccCCCcccEEEccCCccCCCchhhhcccccccEEecCCccccCcchhhhccCcCCcE
Q 036411 324 NLTHLSSLRLNNNH-FSGKMADGLLSSTLLDVLDVSNNKLSGDIPHWIGNFSVLWLLLMSENYLQGSIPVQLGNLESLEF 402 (487)
Q Consensus 324 ~~~~L~~L~l~~~~-~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~ 402 (487)
.+.++.......-. ..+.....+.-+..|+++|+++|.++ .+.....-.|.++.|+++.|.+... ..++.+++|+.
T Consensus 257 pe~~~~D~~~~E~~t~~G~~~~~~dTWq~LtelDLS~N~I~-~iDESvKL~Pkir~L~lS~N~i~~v--~nLa~L~~L~~ 333 (490)
T KOG1259|consen 257 PETILADPSGSEPSTSNGSALVSADTWQELTELDLSGNLIT-QIDESVKLAPKLRRLILSQNRIRTV--QNLAELPQLQL 333 (490)
T ss_pred chhhhcCccCCCCCccCCceEEecchHhhhhhccccccchh-hhhhhhhhccceeEEeccccceeee--hhhhhcccceE
Confidence 22333322222111 11222333445667888999998886 5566677778889999999887632 22677889999
Q ss_pred EeccCCccccccccccCCCcceEEEeeCcccCCcchHhhhccCcceEEeCCCCcccccCc-ccccccCceeEEeccCCcc
Q 036411 403 IDISENGLSVSMVSLSNLSSVKHIYLHNNAINGLIPIALLRSSTLLTLDLRDNKFFGRIP-HQINELSNLHFLLLRGNSL 481 (487)
Q Consensus 403 l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~-~~l~~l~~L~~L~l~~~~~ 481 (487)
|++++|.++.....-..+.+++.|.+.+|.+.+. ..+..+-+|..||+++|++...-. ..++++|-|+.+.+.+||+
T Consensus 334 LDLS~N~Ls~~~Gwh~KLGNIKtL~La~N~iE~L--SGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl 411 (490)
T KOG1259|consen 334 LDLSGNLLAECVGWHLKLGNIKTLKLAQNKIETL--SGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPL 411 (490)
T ss_pred eecccchhHhhhhhHhhhcCEeeeehhhhhHhhh--hhhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCCc
Confidence 9999998864444444778888999999888754 345667788999999998843222 3678899999999999998
Q ss_pred CCCC
Q 036411 482 QGRI 485 (487)
Q Consensus 482 ~~~~ 485 (487)
.+++
T Consensus 412 ~~~v 415 (490)
T KOG1259|consen 412 AGSV 415 (490)
T ss_pred cccc
Confidence 8653
|
|
| >KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.17 E-value=7.7e-12 Score=111.51 Aligned_cols=206 Identities=21% Similarity=0.227 Sum_probs=118.9
Q ss_pred CCceeecccccccccc--cccccCCcccEEeCCCCcccCCcc-hHhhhcCCCCcEEEcccCCCCCCCCCCCCcCCCCCcE
Q 036411 156 PLKVLQLSHCHLNVNS--SFLLHQHHLKFLDLSHNQLVGNFP-TWLLQNNTGLEVLILWNNSFSGILPRLPNAKYDKLRH 232 (487)
Q Consensus 156 ~L~~L~l~~~~~~~~~--~~~~~~~~L~~L~l~~~~~~~~~~-~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~ 232 (487)
+|+.+.+.++.+...+ .....|++++.|+++.|-+....+ ..+++++|+|+.|+++.|.+...........++.++.
T Consensus 122 kL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~~lK~ 201 (505)
T KOG3207|consen 122 KLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLSHLKQ 201 (505)
T ss_pred hhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhhhhhe
Confidence 4666666666654333 355567777777777775542222 2345677778888777777655444333356677788
Q ss_pred EEccCCcccccCCcccccccCceEEEEccCCCCCCCcchhhhccccCcEEecccccCCCCCc-hhhhcCCCCCcEEECCC
Q 036411 233 LDISTNNFSGKLPENLGIVFQKLIYLDVSKNSFEGNIPYSISEMKELITLDLSRNNFSGELP-RSIFSSCLSLETLDLSN 311 (487)
Q Consensus 233 L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~-~~~~~~~~~L~~L~l~~ 311 (487)
|.+++|.++.....++...+|+|+.|.+.+|...........-++.|++|++++|++. .++ ......++.|+.|+++.
T Consensus 202 L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li-~~~~~~~~~~l~~L~~Lnls~ 280 (505)
T KOG3207|consen 202 LVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLI-DFDQGYKVGTLPGLNQLNLSS 280 (505)
T ss_pred EEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCccc-ccccccccccccchhhhhccc
Confidence 8888877764444444555677777877777432233333445667777777777766 343 22335567777777777
Q ss_pred CccCCCCCcC------CcCCCCccEEEcCCCcccc-cccccccCCCcccEEEccCCcc
Q 036411 312 NNFYGQLFPN------FMNLTHLSSLRLNNNHFSG-KMADGLLSSTLLDVLDVSNNKL 362 (487)
Q Consensus 312 ~~~~~~~~~~------~~~~~~L~~L~l~~~~~~~-~~~~~~~~~~~L~~L~l~~~~~ 362 (487)
|.+.+..... ...+++|+.|.+..|++.. .....+...++|+.+.+-.+.+
T Consensus 281 tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~~w~sl~~l~~l~nlk~l~~~~n~l 338 (505)
T KOG3207|consen 281 TGIASIAEPDVESLDKTHTFPKLEYLNISENNIRDWRSLNHLRTLENLKHLRITLNYL 338 (505)
T ss_pred cCcchhcCCCccchhhhcccccceeeecccCccccccccchhhccchhhhhhcccccc
Confidence 7664322111 2345666777766666631 1112223344555555555544
|
|
| >PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A | Back alignment and domain information |
|---|
Probab=99.14 E-value=8.1e-11 Score=95.64 Aligned_cols=126 Identities=27% Similarity=0.311 Sum_probs=48.6
Q ss_pred cCCCcccEEEccCCccCCCchhhhc-ccccccEEecCCccccCcchhhhccCcCCcEEeccCCcccccccccc-CCCcce
Q 036411 347 LSSTLLDVLDVSNNKLSGDIPHWIG-NFSVLWLLLMSENYLQGSIPVQLGNLESLEFIDISENGLSVSMVSLS-NLSSVK 424 (487)
Q Consensus 347 ~~~~~L~~L~l~~~~~~~~~~~~~~-~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~-~~~~L~ 424 (487)
.++.++++|+++|++++.. ..++ .+..|+.|++++|.+.. . +.+..++.|+.|++++|.++...+.+. .+|+|+
T Consensus 16 ~n~~~~~~L~L~~n~I~~I--e~L~~~l~~L~~L~Ls~N~I~~-l-~~l~~L~~L~~L~L~~N~I~~i~~~l~~~lp~L~ 91 (175)
T PF14580_consen 16 NNPVKLRELNLRGNQISTI--ENLGATLDKLEVLDLSNNQITK-L-EGLPGLPRLKTLDLSNNRISSISEGLDKNLPNLQ 91 (175)
T ss_dssp ----------------------S--TT-TT--EEE-TTS--S----TT----TT--EEE--SS---S-CHHHHHH-TT--
T ss_pred ccccccccccccccccccc--cchhhhhcCCCEEECCCCCCcc-c-cCccChhhhhhcccCCCCCCccccchHHhCCcCC
Confidence 3455788889999888632 2344 56788888888888863 2 356778888888888888875544443 578888
Q ss_pred EEEeeCcccCCcch-HhhhccCcceEEeCCCCcccccCc---ccccccCceeEEec
Q 036411 425 HIYLHNNAINGLIP-IALLRSSTLLTLDLRDNKFFGRIP---HQINELSNLHFLLL 476 (487)
Q Consensus 425 ~L~l~~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~~~---~~l~~l~~L~~L~l 476 (487)
+|++++|++..... ..+..+++|+.|++.+|+++..-- ..+..+|+|+.||-
T Consensus 92 ~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD~ 147 (175)
T PF14580_consen 92 ELYLSNNKISDLNELEPLSSLPKLRVLSLEGNPVCEKKNYRLFVIYKLPSLKVLDG 147 (175)
T ss_dssp EEE-TTS---SCCCCGGGGG-TT--EEE-TT-GGGGSTTHHHHHHHH-TT-SEETT
T ss_pred EEECcCCcCCChHHhHHHHcCCCcceeeccCCcccchhhHHHHHHHHcChhheeCC
Confidence 88888888875432 456778888888888888864321 25567888888773
|
|
| >PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A | Back alignment and domain information |
|---|
Probab=99.12 E-value=9.7e-11 Score=95.17 Aligned_cols=129 Identities=29% Similarity=0.250 Sum_probs=52.4
Q ss_pred ccccccEEecCCcccccccccccc-CCCCCcEEEccCccccCCcccccccCCCCCcEEECCCCccCCCcchhc-cCCCCc
Q 036411 6 SLKQLKILNLGFNFFIDSILPYLN-TLTSLTTLNLRYNKIEGSRTKQGICNLKNLLELDLSSNNFEGHLPQCL-NNLTHL 83 (487)
Q Consensus 6 ~~~~L~~L~l~~~~~~~~~~~~~~-~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~-~~l~~L 83 (487)
+..+++.|+|.++.+... +.+. .+.+|+.|++++|.|... +.+..++.|++|++++|.+++. ...+ ..+|+|
T Consensus 17 n~~~~~~L~L~~n~I~~I--e~L~~~l~~L~~L~Ls~N~I~~l---~~l~~L~~L~~L~L~~N~I~~i-~~~l~~~lp~L 90 (175)
T PF14580_consen 17 NPVKLRELNLRGNQISTI--ENLGATLDKLEVLDLSNNQITKL---EGLPGLPRLKTLDLSNNRISSI-SEGLDKNLPNL 90 (175)
T ss_dssp ---------------------S--TT-TT--EEE-TTS--S-----TT----TT--EEE--SS---S--CHHHHHH-TT-
T ss_pred cccccccccccccccccc--cchhhhhcCCCEEECCCCCCccc---cCccChhhhhhcccCCCCCCcc-ccchHHhCCcC
Confidence 445688899999887653 3455 578999999999998743 3478889999999999999844 3334 468999
Q ss_pred cEEeccCccccCC-ccccccCCCCCcEEeccccccCcch--hHHHhhccccceEEEeccC
Q 036411 84 KVLDISYNQLSGN-FPSVLTNLTSLEYLDLSFIDFQGTF--LINSLANHSKLEVLVLSSG 140 (487)
Q Consensus 84 ~~L~l~~~~~~~~-~~~~~~~~~~L~~L~l~~~~~~~~~--~~~~~~~~~~L~~l~l~~~ 140 (487)
++|++++|.+.+. .-..+..+++|+.|++.+|.+.... -...+..+|+|+.|+-...
T Consensus 91 ~~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD~~~V 150 (175)
T PF14580_consen 91 QELYLSNNKISDLNELEPLSSLPKLRVLSLEGNPVCEKKNYRLFVIYKLPSLKVLDGQDV 150 (175)
T ss_dssp -EEE-TTS---SCCCCGGGGG-TT--EEE-TT-GGGGSTTHHHHHHHH-TT-SEETTEET
T ss_pred CEEECcCCcCCChHHhHHHHcCCCcceeeccCCcccchhhHHHHHHHHcChhheeCCEEc
Confidence 9999999988632 1245677899999999988876432 3457788888888876443
|
|
| >KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.12 E-value=1.1e-11 Score=107.37 Aligned_cols=185 Identities=21% Similarity=0.263 Sum_probs=108.5
Q ss_pred hhccccCcEEecccccCCCCCch---hhhcCCCCCcEEECCCCccCCCC-------------CcCCcCCCCccEEEcCCC
Q 036411 273 ISEMKELITLDLSRNNFSGELPR---SIFSSCLSLETLDLSNNNFYGQL-------------FPNFMNLTHLSSLRLNNN 336 (487)
Q Consensus 273 ~~~~~~L~~L~l~~~~~~~~~~~---~~~~~~~~L~~L~l~~~~~~~~~-------------~~~~~~~~~L~~L~l~~~ 336 (487)
+..+++|+.|++++|.+....+. ....++..|++|.+.+|.+.... ......-+.|+.+....|
T Consensus 88 L~~~~~L~~ldLSDNA~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rN 167 (382)
T KOG1909|consen 88 LLGCPKLQKLDLSDNAFGPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRN 167 (382)
T ss_pred HhcCCceeEeeccccccCccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeecc
Confidence 33444555555555554322221 12234555555555555443211 111234466777777766
Q ss_pred cccc----cccccccCCCcccEEEccCCccCC----CchhhhcccccccEEecCCccccC----cchhhhccCcCCcEEe
Q 036411 337 HFSG----KMADGLLSSTLLDVLDVSNNKLSG----DIPHWIGNFSVLWLLLMSENYLQG----SIPVQLGNLESLEFID 404 (487)
Q Consensus 337 ~~~~----~~~~~~~~~~~L~~L~l~~~~~~~----~~~~~~~~~~~L~~L~l~~~~~~~----~~~~~~~~~~~L~~l~ 404 (487)
.+.. .....+...+.|+.+.+..|.+.. .....+..|++|+.|++.+|.++. .+...++..++|+.++
T Consensus 168 rlen~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~ 247 (382)
T KOG1909|consen 168 RLENGGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELN 247 (382)
T ss_pred ccccccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeec
Confidence 6542 233445566777888877776532 234566778888888888886653 2334456677888888
Q ss_pred ccCCccc-----ccccccc-CCCcceEEEeeCcccCCcchHh----hhccCcceEEeCCCCcc
Q 036411 405 ISENGLS-----VSMVSLS-NLSSVKHIYLHNNAINGLIPIA----LLRSSTLLTLDLRDNKF 457 (487)
Q Consensus 405 l~~~~~~-----~~~~~~~-~~~~L~~L~l~~~~~~~~~~~~----~~~~~~L~~L~l~~~~~ 457 (487)
+++|.+. .....+. ..|.|+.+.+.+|.++.....+ +...+.|+.|+|++|.+
T Consensus 248 l~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~l 310 (382)
T KOG1909|consen 248 LGDCLLENEGAIAFVDALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNRL 310 (382)
T ss_pred ccccccccccHHHHHHHHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCcccc
Confidence 8888763 1122222 5688888888888887543333 33458888888888887
|
|
| >KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.08 E-value=4.5e-12 Score=116.66 Aligned_cols=172 Identities=36% Similarity=0.476 Sum_probs=93.7
Q ss_pred ccCcEEecccccCCCCCchhhhcCCCCCcEEECCCCccCCCCCcCCcCCCCccEEEcCCCcccccccccccCCCcccEEE
Q 036411 277 KELITLDLSRNNFSGELPRSIFSSCLSLETLDLSNNNFYGQLFPNFMNLTHLSSLRLNNNHFSGKMADGLLSSTLLDVLD 356 (487)
Q Consensus 277 ~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~ 356 (487)
..-...+++.|.+. ++|..+ ..+..|+.+.+..|.+. .+++.+.++..|..++++.|.++ ..+..++.++ |+.|-
T Consensus 75 tdt~~aDlsrNR~~-elp~~~-~~f~~Le~liLy~n~~r-~ip~~i~~L~~lt~l~ls~NqlS-~lp~~lC~lp-Lkvli 149 (722)
T KOG0532|consen 75 TDTVFADLSRNRFS-ELPEEA-CAFVSLESLILYHNCIR-TIPEAICNLEALTFLDLSSNQLS-HLPDGLCDLP-LKVLI 149 (722)
T ss_pred cchhhhhccccccc-cCchHH-HHHHHHHHHHHHhccce-ecchhhhhhhHHHHhhhccchhh-cCChhhhcCc-ceeEE
Confidence 33445566666666 666553 44556666666665553 44555556666666666666655 3444443333 55556
Q ss_pred ccCCccCCCchhhhcccccccEEecCCccccCcchhhhccCcCCcEEeccCCccccccccccCCCcceEEEeeCcccCCc
Q 036411 357 VSNNKLSGDIPHWIGNFSVLWLLLMSENYLQGSIPVQLGNLESLEFIDISENGLSVSMVSLSNLSSVKHIYLHNNAINGL 436 (487)
Q Consensus 357 l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~ 436 (487)
+++|+++ .+|..++..+.|..++.+.|.+. ..|..+..+.+|+.+.+..|.+...+..+..+| |..||++.|++..
T Consensus 150 ~sNNkl~-~lp~~ig~~~tl~~ld~s~nei~-slpsql~~l~slr~l~vrRn~l~~lp~El~~Lp-Li~lDfScNkis~- 225 (722)
T KOG0532|consen 150 VSNNKLT-SLPEEIGLLPTLAHLDVSKNEIQ-SLPSQLGYLTSLRDLNVRRNHLEDLPEELCSLP-LIRLDFSCNKISY- 225 (722)
T ss_pred EecCccc-cCCcccccchhHHHhhhhhhhhh-hchHHhhhHHHHHHHHHhhhhhhhCCHHHhCCc-eeeeecccCceee-
Confidence 6666554 44555555555555555555554 455555555555555555555544444444333 5555555555553
Q ss_pred chHhhhccCcceEEeCCCCcc
Q 036411 437 IPIALLRSSTLLTLDLRDNKF 457 (487)
Q Consensus 437 ~~~~~~~~~~L~~L~l~~~~~ 457 (487)
+|..|..+++|+.|-|.+|++
T Consensus 226 iPv~fr~m~~Lq~l~LenNPL 246 (722)
T KOG0532|consen 226 LPVDFRKMRHLQVLQLENNPL 246 (722)
T ss_pred cchhhhhhhhheeeeeccCCC
Confidence 344555555555555555555
|
|
| >COG4886 Leucine-rich repeat (LRR) protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.00 E-value=7e-10 Score=105.81 Aligned_cols=197 Identities=33% Similarity=0.419 Sum_probs=124.6
Q ss_pred EEEccCCCCCCCcchhhhccccCcEEecccccCCCCCchhhhcCCC-CCcEEECCCCccCCCCCcCCcCCCCccEEEcCC
Q 036411 257 YLDVSKNSFEGNIPYSISEMKELITLDLSRNNFSGELPRSIFSSCL-SLETLDLSNNNFYGQLFPNFMNLTHLSSLRLNN 335 (487)
Q Consensus 257 ~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~-~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~ 335 (487)
.+....+.+... .......+.++.+++.++.++ .++... .... +|+.|++++|.+.. .+..+..++.|+.|++.+
T Consensus 97 ~l~~~~~~~~~~-~~~~~~~~~l~~L~l~~n~i~-~i~~~~-~~~~~nL~~L~l~~N~i~~-l~~~~~~l~~L~~L~l~~ 172 (394)
T COG4886 97 SLDLNLNRLRSN-ISELLELTNLTSLDLDNNNIT-DIPPLI-GLLKSNLKELDLSDNKIES-LPSPLRNLPNLKNLDLSF 172 (394)
T ss_pred eeeccccccccC-chhhhcccceeEEecCCcccc-cCcccc-ccchhhcccccccccchhh-hhhhhhccccccccccCC
Confidence 566666665322 223344567888888888887 666643 3342 78888888887753 224566777888888888
Q ss_pred CcccccccccccCCCcccEEEccCCccCCCchhhhcccccccEEecCCccccCcchhhhccCcCCcEEeccCCccccccc
Q 036411 336 NHFSGKMADGLLSSTLLDVLDVSNNKLSGDIPHWIGNFSVLWLLLMSENYLQGSIPVQLGNLESLEFIDISENGLSVSMV 415 (487)
Q Consensus 336 ~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~ 415 (487)
|++. ..+......+.|+.+++++|++. .+|........|+++.+++|... ..+..+.++.++..+.+.++++.....
T Consensus 173 N~l~-~l~~~~~~~~~L~~L~ls~N~i~-~l~~~~~~~~~L~~l~~~~N~~~-~~~~~~~~~~~l~~l~l~~n~~~~~~~ 249 (394)
T COG4886 173 NDLS-DLPKLLSNLSNLNNLDLSGNKIS-DLPPEIELLSALEELDLSNNSII-ELLSSLSNLKNLSGLELSNNKLEDLPE 249 (394)
T ss_pred chhh-hhhhhhhhhhhhhheeccCCccc-cCchhhhhhhhhhhhhhcCCcce-ecchhhhhcccccccccCCceeeeccc
Confidence 8776 44444345677777777777776 44444445556777777777433 445555666666666666666654455
Q ss_pred cccCCCcceEEEeeCcccCCcchHhhhccCcceEEeCCCCcccccCc
Q 036411 416 SLSNLSSVKHIYLHNNAINGLIPIALLRSSTLLTLDLRDNKFFGRIP 462 (487)
Q Consensus 416 ~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~ 462 (487)
.+..+++++.|++++|.++.... +....+++.|+++++.+....+
T Consensus 250 ~~~~l~~l~~L~~s~n~i~~i~~--~~~~~~l~~L~~s~n~~~~~~~ 294 (394)
T COG4886 250 SIGNLSNLETLDLSNNQISSISS--LGSLTNLRELDLSGNSLSNALP 294 (394)
T ss_pred hhccccccceecccccccccccc--ccccCccCEEeccCccccccch
Confidence 55566667777777777665543 5556667777777766654444
|
|
| >COG4886 Leucine-rich repeat (LRR) protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.99 E-value=6.9e-10 Score=105.85 Aligned_cols=200 Identities=31% Similarity=0.457 Sum_probs=146.7
Q ss_pred EEEccCCcccccCCcccccccCceEEEEccCCCCCCCcchhhhccc-cCcEEecccccCCCCCchhhhcCCCCCcEEECC
Q 036411 232 HLDISTNNFSGKLPENLGIVFQKLIYLDVSKNSFEGNIPYSISEMK-ELITLDLSRNNFSGELPRSIFSSCLSLETLDLS 310 (487)
Q Consensus 232 ~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~-~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~ 310 (487)
.+....+.+...... .. ..+.++.+++.++.++. .+......+ +|+.|++++|.+. .++.. ...+++|+.|+++
T Consensus 97 ~l~~~~~~~~~~~~~-~~-~~~~l~~L~l~~n~i~~-i~~~~~~~~~nL~~L~l~~N~i~-~l~~~-~~~l~~L~~L~l~ 171 (394)
T COG4886 97 SLDLNLNRLRSNISE-LL-ELTNLTSLDLDNNNITD-IPPLIGLLKSNLKELDLSDNKIE-SLPSP-LRNLPNLKNLDLS 171 (394)
T ss_pred eeeccccccccCchh-hh-cccceeEEecCCccccc-Cccccccchhhcccccccccchh-hhhhh-hhccccccccccC
Confidence 466666655312111 11 12579999999999884 343444453 8999999999998 66533 3678999999999
Q ss_pred CCccCCCCCcCCcCCCCccEEEcCCCcccccccccccCCCcccEEEccCCccCCCchhhhcccccccEEecCCccccCcc
Q 036411 311 NNNFYGQLFPNFMNLTHLSSLRLNNNHFSGKMADGLLSSTLLDVLDVSNNKLSGDIPHWIGNFSVLWLLLMSENYLQGSI 390 (487)
Q Consensus 311 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~ 390 (487)
+|++.+.. ......+.|+.|+++++.+. ..+........|+++.+++|.+. ..+..+..+.++..+.+.++.+. ..
T Consensus 172 ~N~l~~l~-~~~~~~~~L~~L~ls~N~i~-~l~~~~~~~~~L~~l~~~~N~~~-~~~~~~~~~~~l~~l~l~~n~~~-~~ 247 (394)
T COG4886 172 FNDLSDLP-KLLSNLSNLNNLDLSGNKIS-DLPPEIELLSALEELDLSNNSII-ELLSSLSNLKNLSGLELSNNKLE-DL 247 (394)
T ss_pred Cchhhhhh-hhhhhhhhhhheeccCCccc-cCchhhhhhhhhhhhhhcCCcce-ecchhhhhcccccccccCCceee-ec
Confidence 99987433 33336789999999999987 44444344566999999999643 56667788888888888888776 34
Q ss_pred hhhhccCcCCcEEeccCCccccccccccCCCcceEEEeeCcccCCcchHhh
Q 036411 391 PVQLGNLESLEFIDISENGLSVSMVSLSNLSSVKHIYLHNNAINGLIPIAL 441 (487)
Q Consensus 391 ~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~ 441 (487)
+..+..+++++.|++++|.+..... +....+++.|+++++.+....+...
T Consensus 248 ~~~~~~l~~l~~L~~s~n~i~~i~~-~~~~~~l~~L~~s~n~~~~~~~~~~ 297 (394)
T COG4886 248 PESIGNLSNLETLDLSNNQISSISS-LGSLTNLRELDLSGNSLSNALPLIA 297 (394)
T ss_pred cchhccccccceecccccccccccc-ccccCccCEEeccCccccccchhhh
Confidence 6777888899999999999875555 7788999999999999887655443
|
|
| >PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A | Back alignment and domain information |
|---|
Probab=98.99 E-value=3.2e-10 Score=75.66 Aligned_cols=61 Identities=30% Similarity=0.445 Sum_probs=54.8
Q ss_pred CcceEEEeeCcccCCcchHhhhccCcceEEeCCCCcccccCcccccccCceeEEeccCCcc
Q 036411 421 SSVKHIYLHNNAINGLIPIALLRSSTLLTLDLRDNKFFGRIPHQINELSNLHFLLLRGNSL 481 (487)
Q Consensus 421 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~ 481 (487)
|+|++|++++|++....+.+|..+++|+.|++++|.+....+..|.++++|++|++++|+|
T Consensus 1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l 61 (61)
T PF13855_consen 1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL 61 (61)
T ss_dssp TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence 5789999999999988888899999999999999999877778999999999999999985
|
... |
| >KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton] | Back alignment and domain information |
|---|
Probab=98.96 E-value=2.2e-10 Score=97.41 Aligned_cols=127 Identities=22% Similarity=0.254 Sum_probs=59.5
Q ss_pred CCccEEEcCCCcccccccccccCCCcccEEEccCCccCCCchhhhcccccccEEecCCccccCcchhhhccCcCCcEEec
Q 036411 326 THLSSLRLNNNHFSGKMADGLLSSTLLDVLDVSNNKLSGDIPHWIGNFSVLWLLLMSENYLQGSIPVQLGNLESLEFIDI 405 (487)
Q Consensus 326 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l 405 (487)
+.|+++++++|.++ .+.+.+.-.|.++.|+++.|.+... ..++.+++|+.|++++|.++ ....+-.++.+.+.|.+
T Consensus 284 q~LtelDLS~N~I~-~iDESvKL~Pkir~L~lS~N~i~~v--~nLa~L~~L~~LDLS~N~Ls-~~~Gwh~KLGNIKtL~L 359 (490)
T KOG1259|consen 284 QELTELDLSGNLIT-QIDESVKLAPKLRRLILSQNRIRTV--QNLAELPQLQLLDLSGNLLA-ECVGWHLKLGNIKTLKL 359 (490)
T ss_pred hhhhhccccccchh-hhhhhhhhccceeEEeccccceeee--hhhhhcccceEeecccchhH-hhhhhHhhhcCEeeeeh
Confidence 44455555555544 3334444445555555555544311 12444555555555555444 23333334445555555
Q ss_pred cCCccccccccccCCCcceEEEeeCcccCCcch-HhhhccCcceEEeCCCCcc
Q 036411 406 SENGLSVSMVSLSNLSSVKHIYLHNNAINGLIP-IALLRSSTLLTLDLRDNKF 457 (487)
Q Consensus 406 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~-~~~~~~~~L~~L~l~~~~~ 457 (487)
.+|.+. ...++..+.+|..||+++|+|..... ..+.+++.|+.+.|.+|++
T Consensus 360 a~N~iE-~LSGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl 411 (490)
T KOG1259|consen 360 AQNKIE-TLSGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPL 411 (490)
T ss_pred hhhhHh-hhhhhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCCc
Confidence 555443 33334444555555555555543211 1234455555555555555
|
|
| >KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.95 E-value=4.6e-11 Score=101.31 Aligned_cols=157 Identities=24% Similarity=0.145 Sum_probs=99.1
Q ss_pred CCcEEECCCCccCCC-cchhccCCCCccEEeccCccccCCccccccCCCCCcEEeccccc-cCcchhHHHhhccccceEE
Q 036411 58 NLLELDLSSNNFEGH-LPQCLNNLTHLKVLDISYNQLSGNFPSVLTNLTSLEYLDLSFID-FQGTFLINSLANHSKLEVL 135 (487)
Q Consensus 58 ~L~~L~l~~~~~~~~-~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~-~~~~~~~~~~~~~~~L~~l 135 (487)
.|+.+|+++..++.. ....++.|.+|+.|.+.+..+.+.+...+.+-.+|+.++++.+. ++.....-.+..|+.|.+|
T Consensus 186 Rlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~L 265 (419)
T KOG2120|consen 186 RLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDEL 265 (419)
T ss_pred hhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhc
Confidence 477788887776532 23345678888888888887777777777777888888888764 5555555677788888888
Q ss_pred EeccCCCccccccccc-cCCCCCceeecccccc----cccccccccCCcccEEeCCCCcccCCcchHhhhcCCCCcEEEc
Q 036411 136 VLSSGNDMLQVKTENW-LPTYPLKVLQLSHCHL----NVNSSFLLHQHHLKFLDLSHNQLVGNFPTWLLQNNTGLEVLIL 210 (487)
Q Consensus 136 ~l~~~~~~~~~~~~~~-~~~~~L~~L~l~~~~~----~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l 210 (487)
++++|....+...... .-.++|+.|+++++.- ..+......|+++.+|+++++..........+..++.|+++.+
T Consensus 266 NlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lSl 345 (419)
T KOG2120|consen 266 NLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLSL 345 (419)
T ss_pred CchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHHhcchheeeeh
Confidence 8887765544433222 2234677777777653 3333344567777777777764322233333335666666666
Q ss_pred ccCC
Q 036411 211 WNNS 214 (487)
Q Consensus 211 ~~~~ 214 (487)
++|-
T Consensus 346 sRCY 349 (419)
T KOG2120|consen 346 SRCY 349 (419)
T ss_pred hhhc
Confidence 6553
|
|
| >KOG4341 consensus F-box protein containing LRR [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.94 E-value=3.5e-11 Score=106.80 Aligned_cols=37 Identities=16% Similarity=0.100 Sum_probs=18.3
Q ss_pred CCcccEEEccCCcc-CCCchhhhcccccccEEecCCcc
Q 036411 349 STLLDVLDVSNNKL-SGDIPHWIGNFSVLWLLLMSENY 385 (487)
Q Consensus 349 ~~~L~~L~l~~~~~-~~~~~~~~~~~~~L~~L~l~~~~ 385 (487)
...|+.+.+.+|+. ++..-..+..|++|+.+++.++.
T Consensus 400 ~~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~~~q 437 (483)
T KOG4341|consen 400 LEGLEVLELDNCPLITDATLEHLSICRNLERIELIDCQ 437 (483)
T ss_pred ccccceeeecCCCCchHHHHHHHhhCcccceeeeechh
Confidence 34455555555542 22333344555555555555553
|
|
| >KOG4341 consensus F-box protein containing LRR [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.90 E-value=3.8e-11 Score=106.56 Aligned_cols=301 Identities=17% Similarity=0.069 Sum_probs=139.5
Q ss_pred CCcEEECCCCccCCC--cchhccCCCCccEEeccCcc-ccCCccc-cccCCCCCcEEecccc-ccCcchhHHHhhccccc
Q 036411 58 NLLELDLSSNNFEGH--LPQCLNNLTHLKVLDISYNQ-LSGNFPS-VLTNLTSLEYLDLSFI-DFQGTFLINSLANHSKL 132 (487)
Q Consensus 58 ~L~~L~l~~~~~~~~--~~~~~~~l~~L~~L~l~~~~-~~~~~~~-~~~~~~~L~~L~l~~~-~~~~~~~~~~~~~~~~L 132 (487)
.|++|.++++.-... .-....+||++++|++++|. +++.... .-.+|++|+++++..| .++...+......+++|
T Consensus 139 ~lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~kL 218 (483)
T KOG4341|consen 139 FLKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCRKL 218 (483)
T ss_pred ccccccccccccCCcchhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhhhH
Confidence 566666666543211 11223456666666666664 3322111 2235666666666664 24433344455566666
Q ss_pred eEEEeccCCCccccccccccCCCCCceeecccccccccccccccCCcccEEeCCCCc-ccCCcchHhhhcCCCCcEEEcc
Q 036411 133 EVLVLSSGNDMLQVKTENWLPTYPLKVLQLSHCHLNVNSSFLLHQHHLKFLDLSHNQ-LVGNFPTWLLQNNTGLEVLILW 211 (487)
Q Consensus 133 ~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~-~~~~~~~~~~~~~~~L~~L~l~ 211 (487)
+++++++|..+..-... ....+++.++.+...+|. ...+....+...++.+.++++.
T Consensus 219 ~~lNlSwc~qi~~~gv~----------------------~~~rG~~~l~~~~~kGC~e~~le~l~~~~~~~~~i~~lnl~ 276 (483)
T KOG4341|consen 219 KYLNLSWCPQISGNGVQ----------------------ALQRGCKELEKLSLKGCLELELEALLKAAAYCLEILKLNLQ 276 (483)
T ss_pred HHhhhccCchhhcCcch----------------------HHhccchhhhhhhhcccccccHHHHHHHhccChHhhccchh
Confidence 66666666555442211 122223333333333332 1111111111223333344433
Q ss_pred cCCC-CCCCCCCCCcCCCCCcEEEccCCc-ccccCCcccccccCceEEEEccCCCC-CCCcchh-hhccccCcEEecccc
Q 036411 212 NNSF-SGILPRLPNAKYDKLRHLDISTNN-FSGKLPENLGIVFQKLIYLDVSKNSF-EGNIPYS-ISEMKELITLDLSRN 287 (487)
Q Consensus 212 ~~~~-~~~~~~~~~~~~~~L~~L~l~~~~-~~~~~~~~~~~~~~~L~~L~l~~~~~-~~~~~~~-~~~~~~L~~L~l~~~ 287 (487)
.|.. ++...+.....+..++.+..+++. +++......+...++|+.+.+.+|.- ++..... -.+++.|+.+++.++
T Consensus 277 ~c~~lTD~~~~~i~~~c~~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~ 356 (483)
T KOG4341|consen 277 HCNQLTDEDLWLIACGCHALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEEC 356 (483)
T ss_pred hhccccchHHHHHhhhhhHhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhccccc
Confidence 3321 111111111233444555544442 22222333344445666666666642 2111111 134566677776665
Q ss_pred cCCCCC-chhhhcCCCCCcEEECCCCccC-CCC----CcCCcCCCCccEEEcCCCccc-ccccccccCCCcccEEEccCC
Q 036411 288 NFSGEL-PRSIFSSCLSLETLDLSNNNFY-GQL----FPNFMNLTHLSSLRLNNNHFS-GKMADGLLSSTLLDVLDVSNN 360 (487)
Q Consensus 288 ~~~~~~-~~~~~~~~~~L~~L~l~~~~~~-~~~----~~~~~~~~~L~~L~l~~~~~~-~~~~~~~~~~~~L~~L~l~~~ 360 (487)
...... -.+.-.+|+.|+.+.+++|... +.. ...-..+..++.+.+++++.. ....+.+..++.|+.+++.+|
T Consensus 357 ~~~~d~tL~sls~~C~~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~~~ 436 (483)
T KOG4341|consen 357 GLITDGTLASLSRNCPRLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDATLEHLSICRNLERIELIDC 436 (483)
T ss_pred ceehhhhHhhhccCCchhccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHHHHHHHhhCcccceeeeech
Confidence 432111 1122245677777777776532 221 112234567788888888654 344556667788888888888
Q ss_pred cc-CC-CchhhhcccccccEEe
Q 036411 361 KL-SG-DIPHWIGNFSVLWLLL 380 (487)
Q Consensus 361 ~~-~~-~~~~~~~~~~~L~~L~ 380 (487)
+- +. .+...-.++|+++..-
T Consensus 437 q~vtk~~i~~~~~~lp~i~v~a 458 (483)
T KOG4341|consen 437 QDVTKEAISRFATHLPNIKVHA 458 (483)
T ss_pred hhhhhhhhHHHHhhCccceehh
Confidence 53 22 2333445566665543
|
|
| >KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.90 E-value=9.5e-10 Score=112.17 Aligned_cols=271 Identities=22% Similarity=0.173 Sum_probs=145.9
Q ss_pred ccccEEecCCccccccccccccCCCCCcEEEccCcc--ccCCcccccccCCCCCcEEECCCCccCCCcchhccCCCCccE
Q 036411 8 KQLKILNLGFNFFIDSILPYLNTLTSLTTLNLRYNK--IEGSRTKQGICNLKNLLELDLSSNNFEGHLPQCLNNLTHLKV 85 (487)
Q Consensus 8 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~--~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~ 85 (487)
...|...+-++.+... +. -..+++|++|-+.++. +. .+..+.|..+|.|+.||+++|.-...+|..++++-+|++
T Consensus 523 ~~~rr~s~~~~~~~~~-~~-~~~~~~L~tLll~~n~~~l~-~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~Lry 599 (889)
T KOG4658|consen 523 NSVRRMSLMNNKIEHI-AG-SSENPKLRTLLLQRNSDWLL-EISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRY 599 (889)
T ss_pred hheeEEEEeccchhhc-cC-CCCCCccceEEEeecchhhh-hcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhc
Confidence 3445555555543222 11 1344578888887774 33 344455778888888888877665578888888888888
Q ss_pred EeccCccccCCccccccCCCCCcEEeccccccCcchhHHHhhccccceEEEeccCC-CccccccccccCCCCCceeeccc
Q 036411 86 LDISYNQLSGNFPSVLTNLTSLEYLDLSFIDFQGTFLINSLANHSKLEVLVLSSGN-DMLQVKTENWLPTYPLKVLQLSH 164 (487)
Q Consensus 86 L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~l~l~~~~-~~~~~~~~~~~~~~~L~~L~l~~ 164 (487)
|+++++.+. .+|..+.++++|.+|++..+...... ......+++||++.+.... ..+.........+.+|+.+.+..
T Consensus 600 L~L~~t~I~-~LP~~l~~Lk~L~~Lnl~~~~~l~~~-~~i~~~L~~Lr~L~l~~s~~~~~~~~l~el~~Le~L~~ls~~~ 677 (889)
T KOG4658|consen 600 LDLSDTGIS-HLPSGLGNLKKLIYLNLEVTGRLESI-PGILLELQSLRVLRLPRSALSNDKLLLKELENLEHLENLSITI 677 (889)
T ss_pred ccccCCCcc-ccchHHHHHHhhheeccccccccccc-cchhhhcccccEEEeeccccccchhhHHhhhcccchhhheeec
Confidence 888888887 67888888888888888876543332 4556668888888875543 22222222233333444444432
Q ss_pred ccccccccccccCCccc----EEeCCCCcccCCcchHhhhcCCCCcEEEcccCCCCCCCCCC----CCcC-CCCCcEEEc
Q 036411 165 CHLNVNSSFLLHQHHLK----FLDLSHNQLVGNFPTWLLQNNTGLEVLILWNNSFSGILPRL----PNAK-YDKLRHLDI 235 (487)
Q Consensus 165 ~~~~~~~~~~~~~~~L~----~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~----~~~~-~~~L~~L~l 235 (487)
... ....-+....+|. .+.+.++... ........+.+|+.|.+.++.+....... .... ++++..+.+
T Consensus 678 ~s~-~~~e~l~~~~~L~~~~~~l~~~~~~~~--~~~~~~~~l~~L~~L~i~~~~~~e~~~~~~~~~~~~~~f~~l~~~~~ 754 (889)
T KOG4658|consen 678 SSV-LLLEDLLGMTRLRSLLQSLSIEGCSKR--TLISSLGSLGNLEELSILDCGISEIVIEWEESLIVLLCFPNLSKVSI 754 (889)
T ss_pred chh-HhHhhhhhhHHHHHHhHhhhhcccccc--eeecccccccCcceEEEEcCCCchhhcccccccchhhhHHHHHHHHh
Confidence 221 0111112223332 2222222221 11111235678888888877765322110 0011 334444444
Q ss_pred cCCcccccCCcccccccCceEEEEccCCCCCCCcchhhhccccCcEEeccccc
Q 036411 236 STNNFSGKLPENLGIVFQKLIYLDVSKNSFEGNIPYSISEMKELITLDLSRNN 288 (487)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 288 (487)
.++..... +. +...+++|+.|.+.+|............+..+..+.+..+.
T Consensus 755 ~~~~~~r~-l~-~~~f~~~L~~l~l~~~~~~e~~i~~~k~~~~l~~~i~~f~~ 805 (889)
T KOG4658|consen 755 LNCHMLRD-LT-WLLFAPHLTSLSLVSCRLLEDIIPKLKALLELKELILPFNK 805 (889)
T ss_pred hccccccc-cc-hhhccCcccEEEEecccccccCCCHHHHhhhcccEEecccc
Confidence 44432211 11 11235788888888877654444444445445443443333
|
|
| >PLN03150 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=98.80 E-value=1.4e-08 Score=101.38 Aligned_cols=108 Identities=26% Similarity=0.323 Sum_probs=58.5
Q ss_pred ccEEecCCccccCcchhhhccCcCCcEEeccCCccc-cccccccCCCcceEEEeeCcccCCcchHhhhccCcceEEeCCC
Q 036411 376 LWLLLMSENYLQGSIPVQLGNLESLEFIDISENGLS-VSMVSLSNLSSVKHIYLHNNAINGLIPIALLRSSTLLTLDLRD 454 (487)
Q Consensus 376 L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~-~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~ 454 (487)
++.|+++++.+.+..|..+..+++|+.|++++|.+. ..+..+..+++|+.|++++|++.+.+|..+..+++|+.|+|++
T Consensus 420 v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~ 499 (623)
T PLN03150 420 IDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNG 499 (623)
T ss_pred EEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcC
Confidence 445555555555555555555555555555555554 2333444555555555555555555555555556666666666
Q ss_pred CcccccCccccccc-CceeEEeccCCccCC
Q 036411 455 NKFFGRIPHQINEL-SNLHFLLLRGNSLQG 483 (487)
Q Consensus 455 ~~~~~~~~~~l~~l-~~L~~L~l~~~~~~~ 483 (487)
|.+++.+|..+... .++..+++.+|+..+
T Consensus 500 N~l~g~iP~~l~~~~~~~~~l~~~~N~~lc 529 (623)
T PLN03150 500 NSLSGRVPAALGGRLLHRASFNFTDNAGLC 529 (623)
T ss_pred CcccccCChHHhhccccCceEEecCCcccc
Confidence 66555555555442 344555555555333
|
|
| >KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.75 E-value=9.7e-09 Score=104.92 Aligned_cols=204 Identities=25% Similarity=0.245 Sum_probs=129.7
Q ss_pred cCCCCCcEEEccCccccCCcccccccCCCCCcEEECCCCc--cCCCcchhccCCCCccEEeccCccccCCccccccCCCC
Q 036411 29 NTLTSLTTLNLRYNKIEGSRTKQGICNLKNLLELDLSSNN--FEGHLPQCLNNLTHLKVLDISYNQLSGNFPSVLTNLTS 106 (487)
Q Consensus 29 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~--~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~ 106 (487)
......+...+.++.+.... .-..+++|+.|-+..+. +.......|..+|.|..||+++|.--..+|..++.+-+
T Consensus 520 ~~~~~~rr~s~~~~~~~~~~---~~~~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~ 596 (889)
T KOG4658|consen 520 KSWNSVRRMSLMNNKIEHIA---GSSENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVH 596 (889)
T ss_pred cchhheeEEEEeccchhhcc---CCCCCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhh
Confidence 34467788888888775221 23456789999988885 55455566888999999999998655579999999999
Q ss_pred CcEEeccccccCcchhHHHhhccccceEEEeccCCCccccccccccCCCCCceeecccccccccccccccCCcccEEeCC
Q 036411 107 LEYLDLSFIDFQGTFLINSLANHSKLEVLVLSSGNDMLQVKTENWLPTYPLKVLQLSHCHLNVNSSFLLHQHHLKFLDLS 186 (487)
Q Consensus 107 L~~L~l~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~ 186 (487)
||+|+++++.+. ..+..++++..|.+|++......... ......+++|++|.+...........+....+|+.|..-
T Consensus 597 LryL~L~~t~I~--~LP~~l~~Lk~L~~Lnl~~~~~l~~~-~~i~~~L~~Lr~L~l~~s~~~~~~~~l~el~~Le~L~~l 673 (889)
T KOG4658|consen 597 LRYLDLSDTGIS--HLPSGLGNLKKLIYLNLEVTGRLESI-PGILLELQSLRVLRLPRSALSNDKLLLKELENLEHLENL 673 (889)
T ss_pred hhcccccCCCcc--ccchHHHHHHhhheeccccccccccc-cchhhhcccccEEEeeccccccchhhHHhhhcccchhhh
Confidence 999999999886 56788999999999999776554444 444555789999998776532222223333344444332
Q ss_pred CCcccCC-cchHhhhcCCCCc----EEEcccCCCCCCCCCCCCcCCCCCcEEEccCCccc
Q 036411 187 HNQLVGN-FPTWLLQNNTGLE----VLILWNNSFSGILPRLPNAKYDKLRHLDISTNNFS 241 (487)
Q Consensus 187 ~~~~~~~-~~~~~~~~~~~L~----~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 241 (487)
.+..... +...+ ..++.|. .+.+.++..... ......+.+|+.|.+..+.+.
T Consensus 674 s~~~~s~~~~e~l-~~~~~L~~~~~~l~~~~~~~~~~--~~~~~~l~~L~~L~i~~~~~~ 730 (889)
T KOG4658|consen 674 SITISSVLLLEDL-LGMTRLRSLLQSLSIEGCSKRTL--ISSLGSLGNLEELSILDCGIS 730 (889)
T ss_pred eeecchhHhHhhh-hhhHHHHHHhHhhhhccccccee--ecccccccCcceEEEEcCCCc
Confidence 2222211 11111 1233333 222222211111 113366777888888887665
|
|
| >KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.75 E-value=7.3e-10 Score=94.19 Aligned_cols=198 Identities=20% Similarity=0.153 Sum_probs=138.5
Q ss_pred ccccEEecCCcccccc-ccccccCCCCCcEEEccCccccCCcccccccCCCCCcEEECCCCccCCCcc--hhccCCCCcc
Q 036411 8 KQLKILNLGFNFFIDS-ILPYLNTLTSLTTLNLRYNKIEGSRTKQGICNLKNLLELDLSSNNFEGHLP--QCLNNLTHLK 84 (487)
Q Consensus 8 ~~L~~L~l~~~~~~~~-~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~--~~~~~l~~L~ 84 (487)
+.|+.+||++..+... ....++.|.+|+.|.+.+..+.+-+. ..+..-.+|+.|+++.|....+.. -.+.+|+.|.
T Consensus 185 sRlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~-~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~ 263 (419)
T KOG2120|consen 185 SRLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIV-NTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLD 263 (419)
T ss_pred hhhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHH-HHHhccccceeeccccccccchhHHHHHHHhhhhHh
Confidence 4588899997765433 34457889999999999988865443 347777999999999886543322 2367899999
Q ss_pred EEeccCccccC-CccccccC-CCCCcEEeccccc--cCcchhHHHhhccccceEEEeccCCCccccccccccCCCCCcee
Q 036411 85 VLDISYNQLSG-NFPSVLTN-LTSLEYLDLSFID--FQGTFLINSLANHSKLEVLVLSSGNDMLQVKTENWLPTYPLKVL 160 (487)
Q Consensus 85 ~L~l~~~~~~~-~~~~~~~~-~~~L~~L~l~~~~--~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L 160 (487)
.|++++|.... .....+.+ -++|..|+++++. +.........+++|++-+|+++++..++......+...+-|++|
T Consensus 264 ~LNlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~l 343 (419)
T KOG2120|consen 264 ELNLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHL 343 (419)
T ss_pred hcCchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHHhcchheee
Confidence 99999997642 22222222 3678899998873 33344455667999999999999888877767778888899999
Q ss_pred ecccccc--cccccccccCCcccEEeCCCCcccCCcchHhhhcCCCCcE
Q 036411 161 QLSHCHL--NVNSSFLLHQHHLKFLDLSHNQLVGNFPTWLLQNNTGLEV 207 (487)
Q Consensus 161 ~l~~~~~--~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~ 207 (487)
+++.|.. ..-...+...|.|.+|++.++--. ...+.+.+.+++++.
T Consensus 344 SlsRCY~i~p~~~~~l~s~psl~yLdv~g~vsd-t~mel~~e~~~~lki 391 (419)
T KOG2120|consen 344 SLSRCYDIIPETLLELNSKPSLVYLDVFGCVSD-TTMELLKEMLSHLKI 391 (419)
T ss_pred ehhhhcCCChHHeeeeccCcceEEEEeccccCc-hHHHHHHHhCccccc
Confidence 9998864 111123556789999999877432 344445556676654
|
|
| >KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=98.70 E-value=1.2e-09 Score=101.01 Aligned_cols=149 Identities=30% Similarity=0.371 Sum_probs=60.3
Q ss_pred ceEEEEccCCCCCCCcchhhhccccCcEEecccccCCCCCchhhhcCCCCCcEEECCCCccCCCCCcCCcCCCCccEEEc
Q 036411 254 KLIYLDVSKNSFEGNIPYSISEMKELITLDLSRNNFSGELPRSIFSSCLSLETLDLSNNNFYGQLFPNFMNLTHLSSLRL 333 (487)
Q Consensus 254 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l 333 (487)
.|+.+.++.|.+. ..+..+.++..|++++++.|++. .+|..++ .--|+.|-+++|.++ ..++.+...+.|..|+.
T Consensus 99 ~Le~liLy~n~~r-~ip~~i~~L~~lt~l~ls~NqlS-~lp~~lC--~lpLkvli~sNNkl~-~lp~~ig~~~tl~~ld~ 173 (722)
T KOG0532|consen 99 SLESLILYHNCIR-TIPEAICNLEALTFLDLSSNQLS-HLPDGLC--DLPLKVLIVSNNKLT-SLPEEIGLLPTLAHLDV 173 (722)
T ss_pred HHHHHHHHhccce-ecchhhhhhhHHHHhhhccchhh-cCChhhh--cCcceeEEEecCccc-cCCcccccchhHHHhhh
Confidence 3444444444443 33334444444444444444444 4444332 123444444444443 23333333444444444
Q ss_pred CCCcccccccccccCCCcccEEEccCCccCCCchhhhcccccccEEecCCccccCcchhhhccCcCCcEEeccCCccc
Q 036411 334 NNNHFSGKMADGLLSSTLLDVLDVSNNKLSGDIPHWIGNFSVLWLLLMSENYLQGSIPVQLGNLESLEFIDISENGLS 411 (487)
Q Consensus 334 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~ 411 (487)
+.|.+. ..+..+.++.+|+.|.+..|.+. -.|..+. .-.|..||++.|++. .+|.+|.++..|+.|.|++|++.
T Consensus 174 s~nei~-slpsql~~l~slr~l~vrRn~l~-~lp~El~-~LpLi~lDfScNkis-~iPv~fr~m~~Lq~l~LenNPLq 247 (722)
T KOG0532|consen 174 SKNEIQ-SLPSQLGYLTSLRDLNVRRNHLE-DLPEELC-SLPLIRLDFSCNKIS-YLPVDFRKMRHLQVLQLENNPLQ 247 (722)
T ss_pred hhhhhh-hchHHhhhHHHHHHHHHhhhhhh-hCCHHHh-CCceeeeecccCcee-ecchhhhhhhhheeeeeccCCCC
Confidence 444443 23333333444444444444333 1222222 222333444444443 34444444444444444444443
|
|
| >PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A | Back alignment and domain information |
|---|
Probab=98.70 E-value=1.3e-08 Score=67.78 Aligned_cols=60 Identities=38% Similarity=0.562 Sum_probs=31.6
Q ss_pred CCCcEEEccCccccCCcccccccCCCCCcEEECCCCccCCCcchhccCCCCccEEeccCcc
Q 036411 32 TSLTTLNLRYNKIEGSRTKQGICNLKNLLELDLSSNNFEGHLPQCLNNLTHLKVLDISYNQ 92 (487)
Q Consensus 32 ~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~ 92 (487)
|+|++|++++|.+. .+.++.|.++++|++|++++|.+....+..|.++++|++|++++|.
T Consensus 1 p~L~~L~l~~n~l~-~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~ 60 (61)
T PF13855_consen 1 PNLESLDLSNNKLT-EIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNN 60 (61)
T ss_dssp TTESEEEETSSTES-EECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSS
T ss_pred CcCcEEECCCCCCC-ccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCc
Confidence 34555555555554 2233455555555555555555554444455555555555555553
|
... |
| >KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.68 E-value=2.6e-09 Score=101.92 Aligned_cols=219 Identities=27% Similarity=0.246 Sum_probs=116.9
Q ss_pred CceEEEEccCCCCCCCcchhhhccccCcEEecccccCCCCCchhhhcCCCCCcEEECCCCccCCCCCcCCcCCCCccEEE
Q 036411 253 QKLIYLDVSKNSFEGNIPYSISEMKELITLDLSRNNFSGELPRSIFSSCLSLETLDLSNNNFYGQLFPNFMNLTHLSSLR 332 (487)
Q Consensus 253 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~ 332 (487)
.+++.+++.+|.+... ...+..+++|+.|++++|.+. .+.. +..++.|+.|++.+|.+.. ...+..++.|+.++
T Consensus 95 ~~l~~l~l~~n~i~~i-~~~l~~~~~L~~L~ls~N~I~-~i~~--l~~l~~L~~L~l~~N~i~~--~~~~~~l~~L~~l~ 168 (414)
T KOG0531|consen 95 KSLEALDLYDNKIEKI-ENLLSSLVNLQVLDLSFNKIT-KLEG--LSTLTLLKELNLSGNLISD--ISGLESLKSLKLLD 168 (414)
T ss_pred cceeeeeccccchhhc-ccchhhhhcchheeccccccc-cccc--hhhccchhhheeccCcchh--ccCCccchhhhccc
Confidence 4566666666665422 111455666666666666665 3333 2334556666666666643 23344456666666
Q ss_pred cCCCccccccc-ccccCCCcccEEEccCCccCCCchhhhcccccccEEecCCccccCcchhhhccCc--CCcEEeccCCc
Q 036411 333 LNNNHFSGKMA-DGLLSSTLLDVLDVSNNKLSGDIPHWIGNFSVLWLLLMSENYLQGSIPVQLGNLE--SLEFIDISENG 409 (487)
Q Consensus 333 l~~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~--~L~~l~l~~~~ 409 (487)
+.+|.+..... . ...+.+++.+++.++.+... ..+..+..+..+++..+.++...+ +...+ +|+.+++.+++
T Consensus 169 l~~n~i~~ie~~~-~~~~~~l~~l~l~~n~i~~i--~~~~~~~~l~~~~l~~n~i~~~~~--l~~~~~~~L~~l~l~~n~ 243 (414)
T KOG0531|consen 169 LSYNRIVDIENDE-LSELISLEELDLGGNSIREI--EGLDLLKKLVLLSLLDNKISKLEG--LNELVMLHLRELYLSGNR 243 (414)
T ss_pred CCcchhhhhhhhh-hhhccchHHHhccCCchhcc--cchHHHHHHHHhhcccccceeccC--cccchhHHHHHHhcccCc
Confidence 66666543222 1 34556667777777665422 222223333333555555442111 11112 36777777777
Q ss_pred cccccccccCCCcceEEEeeCcccCCcchHhhhccCcceEEeCCCCcccc---cCcc-cccccCceeEEeccCCccCCC
Q 036411 410 LSVSMVSLSNLSSVKHIYLHNNAINGLIPIALLRSSTLLTLDLRDNKFFG---RIPH-QINELSNLHFLLLRGNSLQGR 484 (487)
Q Consensus 410 ~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~---~~~~-~l~~l~~L~~L~l~~~~~~~~ 484 (487)
+......+..+.++..+++.++.+.... .+.....+..+....+++.. .... .....++++.+++.++|+...
T Consensus 244 i~~~~~~~~~~~~l~~l~~~~n~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 320 (414)
T KOG0531|consen 244 ISRSPEGLENLKNLPVLDLSSNRISNLE--GLERLPKLSELWLNDNKLALSEAISQEYITSAAPTLVTLTLELNPIRKI 320 (414)
T ss_pred cccccccccccccccccchhhccccccc--cccccchHHHhccCcchhcchhhhhccccccccccccccccccCccccc
Confidence 6533355556677777777777766432 23334556666666666531 1111 145667777777777776654
|
|
| >KOG1859 consensus Leucine-rich repeat proteins [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.60 E-value=2.7e-09 Score=101.58 Aligned_cols=128 Identities=26% Similarity=0.213 Sum_probs=101.5
Q ss_pred CcccEEEccCCccCCCchhhhcccccccEEecCCccccCcchhhhccCcCCcEEeccCCcccccccccc-CCCcceEEEe
Q 036411 350 TLLDVLDVSNNKLSGDIPHWIGNFSVLWLLLMSENYLQGSIPVQLGNLESLEFIDISENGLSVSMVSLS-NLSSVKHIYL 428 (487)
Q Consensus 350 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~-~~~~L~~L~l 428 (487)
-.|...+.+.|.++ .....+.-++.++.|+++.|+++.. ..+..|++|+.|||++|.++..+..-. .|. |..|.+
T Consensus 164 n~L~~a~fsyN~L~-~mD~SLqll~ale~LnLshNk~~~v--~~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc~-L~~L~l 239 (1096)
T KOG1859|consen 164 NKLATASFSYNRLV-LMDESLQLLPALESLNLSHNKFTKV--DNLRRLPKLKHLDLSYNCLRHVPQLSMVGCK-LQLLNL 239 (1096)
T ss_pred hhHhhhhcchhhHH-hHHHHHHHHHHhhhhccchhhhhhh--HHHHhcccccccccccchhccccccchhhhh-heeeee
Confidence 36777788888876 6667788899999999999998743 267789999999999999864333322 444 999999
Q ss_pred eCcccCCcchHhhhccCcceEEeCCCCcccc-cCcccccccCceeEEeccCCccCC
Q 036411 429 HNNAINGLIPIALLRSSTLLTLDLRDNKFFG-RIPHQINELSNLHFLLLRGNSLQG 483 (487)
Q Consensus 429 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~-~~~~~l~~l~~L~~L~l~~~~~~~ 483 (487)
++|.++.. ..++++++|+.||+++|-+.+ .-.+.+..+..|+.|++.|||+-.
T Consensus 240 rnN~l~tL--~gie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl~c 293 (1096)
T KOG1859|consen 240 RNNALTTL--RGIENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPLCC 293 (1096)
T ss_pred cccHHHhh--hhHHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCcccc
Confidence 99999865 356788999999999998742 334577889999999999999753
|
|
| >PLN03150 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=98.59 E-value=1.3e-07 Score=94.63 Aligned_cols=106 Identities=31% Similarity=0.518 Sum_probs=58.7
Q ss_pred CcEEECCCCccCCCCCcCCcCCCCccEEEcCCCcccccccccccCCCcccEEEccCCccCCCchhhhcccccccEEecCC
Q 036411 304 LETLDLSNNNFYGQLFPNFMNLTHLSSLRLNNNHFSGKMADGLLSSTLLDVLDVSNNKLSGDIPHWIGNFSVLWLLLMSE 383 (487)
Q Consensus 304 L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~ 383 (487)
++.|++++|.+.+..+..+..+++|+.|++++|.+.+..+..+..+++|+.|++++|++.+.+|..++.+++|+.|++++
T Consensus 420 v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~ 499 (623)
T PLN03150 420 IDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNG 499 (623)
T ss_pred EEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcC
Confidence 45555555555555555555555566666655555555555555555566666666655555555555555666666655
Q ss_pred ccccCcchhhhccC-cCCcEEeccCCc
Q 036411 384 NYLQGSIPVQLGNL-ESLEFIDISENG 409 (487)
Q Consensus 384 ~~~~~~~~~~~~~~-~~L~~l~l~~~~ 409 (487)
|.+.+..|..+... .++..+++.+|.
T Consensus 500 N~l~g~iP~~l~~~~~~~~~l~~~~N~ 526 (623)
T PLN03150 500 NSLSGRVPAALGGRLLHRASFNFTDNA 526 (623)
T ss_pred CcccccCChHHhhccccCceEEecCCc
Confidence 55555555544332 234445555544
|
|
| >KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.50 E-value=1.2e-08 Score=97.53 Aligned_cols=217 Identities=28% Similarity=0.353 Sum_probs=149.6
Q ss_pred cCceEEEEccCCCCCCCcchhhhccccCcEEecccccCCCCCchhhhcCCCCCcEEECCCCccCCCCCcCCcCCCCccEE
Q 036411 252 FQKLIYLDVSKNSFEGNIPYSISEMKELITLDLSRNNFSGELPRSIFSSCLSLETLDLSNNNFYGQLFPNFMNLTHLSSL 331 (487)
Q Consensus 252 ~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L 331 (487)
+..++.+.++.+.+.. ....+..+++++.+++.+|.+. .+... +..+++|++|++++|.+.. ...+..++.|+.|
T Consensus 71 l~~l~~l~l~~n~i~~-~~~~l~~~~~l~~l~l~~n~i~-~i~~~-l~~~~~L~~L~ls~N~I~~--i~~l~~l~~L~~L 145 (414)
T KOG0531|consen 71 LTSLKELNLRQNLIAK-ILNHLSKLKSLEALDLYDNKIE-KIENL-LSSLVNLQVLDLSFNKITK--LEGLSTLTLLKEL 145 (414)
T ss_pred hHhHHhhccchhhhhh-hhcccccccceeeeeccccchh-hcccc-hhhhhcchheecccccccc--ccchhhccchhhh
Confidence 3456666677776653 2334677889999999999987 55442 3668899999999999865 3455677779999
Q ss_pred EcCCCcccccccccccCCCcccEEEccCCccCCCch-hhhcccccccEEecCCccccCcchhhhccCcCCcEEeccCCcc
Q 036411 332 RLNNNHFSGKMADGLLSSTLLDVLDVSNNKLSGDIP-HWIGNFSVLWLLLMSENYLQGSIPVQLGNLESLEFIDISENGL 410 (487)
Q Consensus 332 ~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~ 410 (487)
++.+|.+.. ...+..+..|+.+++++|+++..-+ . ...+.+++.+.+.+|.+... ..+..+..+..+++.++.+
T Consensus 146 ~l~~N~i~~--~~~~~~l~~L~~l~l~~n~i~~ie~~~-~~~~~~l~~l~l~~n~i~~i--~~~~~~~~l~~~~l~~n~i 220 (414)
T KOG0531|consen 146 NLSGNLISD--ISGLESLKSLKLLDLSYNRIVDIENDE-LSELISLEELDLGGNSIREI--EGLDLLKKLVLLSLLDNKI 220 (414)
T ss_pred eeccCcchh--ccCCccchhhhcccCCcchhhhhhhhh-hhhccchHHHhccCCchhcc--cchHHHHHHHHhhcccccc
Confidence 999999863 2334447889999999998874433 2 57788888899998877532 2223333444447777776
Q ss_pred ccccccccCCCc--ceEEEeeCcccCCcchHhhhccCcceEEeCCCCcccccCcccccccCceeEEeccCCccC
Q 036411 411 SVSMVSLSNLSS--VKHIYLHNNAINGLIPIALLRSSTLLTLDLRDNKFFGRIPHQINELSNLHFLLLRGNSLQ 482 (487)
Q Consensus 411 ~~~~~~~~~~~~--L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~ 482 (487)
. ....+...+. |+.+++.++.+... +..+..+..+..+++.++.+. ..+.+...+.+..+....+++.
T Consensus 221 ~-~~~~l~~~~~~~L~~l~l~~n~i~~~-~~~~~~~~~l~~l~~~~n~~~--~~~~~~~~~~~~~~~~~~~~~~ 290 (414)
T KOG0531|consen 221 S-KLEGLNELVMLHLRELYLSGNRISRS-PEGLENLKNLPVLDLSSNRIS--NLEGLERLPKLSELWLNDNKLA 290 (414)
T ss_pred e-eccCcccchhHHHHHHhcccCccccc-cccccccccccccchhhcccc--ccccccccchHHHhccCcchhc
Confidence 5 2233333333 88999999988854 245667788899999988874 2345666777777777777654
|
|
| >KOG2982 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.46 E-value=3.4e-08 Score=84.24 Aligned_cols=112 Identities=26% Similarity=0.285 Sum_probs=80.9
Q ss_pred cCCCCCcEEEccCccccCCcccccc-cCCCCCcEEECCCCccCC--CcchhccCCCCccEEeccCccccCCccccccCCC
Q 036411 29 NTLTSLTTLNLRYNKIEGSRTKQGI-CNLKNLLELDLSSNNFEG--HLPQCLNNLTHLKVLDISYNQLSGNFPSVLTNLT 105 (487)
Q Consensus 29 ~~~~~L~~L~l~~~~~~~~~~~~~~-~~~~~L~~L~l~~~~~~~--~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~ 105 (487)
+....++.|.+.++.|........| ..+..++++|+.+|.+++ ++...++++|.|+.|+++.|.+...+...-....
T Consensus 42 ~s~ra~ellvln~~~id~~gd~~~~~~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~ 121 (418)
T KOG2982|consen 42 SSLRALELLVLNGSIIDNEGDVMLFGSSVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLK 121 (418)
T ss_pred ccccchhhheecCCCCCcchhHHHHHHHhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCccccc
Confidence 3344566777777777644333333 457899999999999863 4555678999999999999987643322213567
Q ss_pred CCcEEeccccccCcchhHHHhhccccceEEEeccC
Q 036411 106 SLEYLDLSFIDFQGTFLINSLANHSKLEVLVLSSG 140 (487)
Q Consensus 106 ~L~~L~l~~~~~~~~~~~~~~~~~~~L~~l~l~~~ 140 (487)
+|+.|.+.++.+........+..+|.++++.++.+
T Consensus 122 nl~~lVLNgT~L~w~~~~s~l~~lP~vtelHmS~N 156 (418)
T KOG2982|consen 122 NLRVLVLNGTGLSWTQSTSSLDDLPKVTELHMSDN 156 (418)
T ss_pred ceEEEEEcCCCCChhhhhhhhhcchhhhhhhhccc
Confidence 89999999998887777778888888888776554
|
|
| >KOG2982 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.37 E-value=7.8e-08 Score=82.11 Aligned_cols=220 Identities=20% Similarity=0.156 Sum_probs=141.6
Q ss_pred ceEEEEccCCCCCCCcch--hhhccccCcEEecccccCCCCCc--hhhhcCCCCCcEEECCCCccCCCCCcCCcCCCCcc
Q 036411 254 KLIYLDVSKNSFEGNIPY--SISEMKELITLDLSRNNFSGELP--RSIFSSCLSLETLDLSNNNFYGQLFPNFMNLTHLS 329 (487)
Q Consensus 254 ~L~~L~l~~~~~~~~~~~--~~~~~~~L~~L~l~~~~~~~~~~--~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~ 329 (487)
.++-+.+.++.+...... .-..++.++++++.+|.++ ... ..+++++|.|+.|+++.|++...+...-....+|+
T Consensus 46 a~ellvln~~~id~~gd~~~~~~~~~~v~elDL~~N~iS-dWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~ 124 (418)
T KOG2982|consen 46 ALELLVLNGSIIDNEGDVMLFGSSVTDVKELDLTGNLIS-DWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLR 124 (418)
T ss_pred chhhheecCCCCCcchhHHHHHHHhhhhhhhhcccchhc-cHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceE
Confidence 455677788877643322 2345788999999999987 443 24568899999999999988643322224567899
Q ss_pred EEEcCCCccc-ccccccccCCCcccEEEccCCccCC--Cchhhhcc-cccccEEecCCccccCcchh---hhccCcCCcE
Q 036411 330 SLRLNNNHFS-GKMADGLLSSTLLDVLDVSNNKLSG--DIPHWIGN-FSVLWLLLMSENYLQGSIPV---QLGNLESLEF 402 (487)
Q Consensus 330 ~L~l~~~~~~-~~~~~~~~~~~~L~~L~l~~~~~~~--~~~~~~~~-~~~L~~L~l~~~~~~~~~~~---~~~~~~~L~~ 402 (487)
.|.+.+..+. ..........|.+++++++.|.... ....+... -+.+++++...|... .... ...-+|++..
T Consensus 125 ~lVLNgT~L~w~~~~s~l~~lP~vtelHmS~N~~rq~n~Dd~c~e~~s~~v~tlh~~~c~~~-~w~~~~~l~r~Fpnv~s 203 (418)
T KOG2982|consen 125 VLVLNGTGLSWTQSTSSLDDLPKVTELHMSDNSLRQLNLDDNCIEDWSTEVLTLHQLPCLEQ-LWLNKNKLSRIFPNVNS 203 (418)
T ss_pred EEEEcCCCCChhhhhhhhhcchhhhhhhhccchhhhhccccccccccchhhhhhhcCCcHHH-HHHHHHhHHhhcccchh
Confidence 9999998765 2333445567888999988884321 11222222 246666776666432 1110 1123578888
Q ss_pred EeccCCcccc--ccccccCCCcceEEEeeCcccCCcch-HhhhccCcceEEeCCCCcccccCcc------cccccCceeE
Q 036411 403 IDISENGLSV--SMVSLSNLSSVKHIYLHNNAINGLIP-IALLRSSTLLTLDLRDNKFFGRIPH------QINELSNLHF 473 (487)
Q Consensus 403 l~l~~~~~~~--~~~~~~~~~~L~~L~l~~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~~~~------~l~~l~~L~~ 473 (487)
+-+..|+++. ...+...+|.+..|.+..+++.+... .++..+++|.-|.++++++.+.+-. .++.+++++.
T Consensus 204 v~v~e~PlK~~s~ek~se~~p~~~~LnL~~~~idswasvD~Ln~f~~l~dlRv~~~Pl~d~l~~~err~llIaRL~~v~v 283 (418)
T KOG2982|consen 204 VFVCEGPLKTESSEKGSEPFPSLSCLNLGANNIDSWASVDALNGFPQLVDLRVSENPLSDPLRGGERRFLLIARLTKVQV 283 (418)
T ss_pred eeeecCcccchhhcccCCCCCcchhhhhcccccccHHHHHHHcCCchhheeeccCCcccccccCCcceEEEEeeccceEE
Confidence 8888887742 22333466777788888888876432 3566778888888888887543332 3456777777
Q ss_pred Ee
Q 036411 474 LL 475 (487)
Q Consensus 474 L~ 475 (487)
|+
T Consensus 284 LN 285 (418)
T KOG2982|consen 284 LN 285 (418)
T ss_pred ec
Confidence 65
|
|
| >COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.30 E-value=3.1e-07 Score=77.51 Aligned_cols=86 Identities=20% Similarity=0.098 Sum_probs=43.2
Q ss_pred CCCceeeccccccc------ccccccccCCcccEEeCCCCcccCCcchHhhhc---CCCCcEEEcccCCCCCCCCC----
Q 036411 155 YPLKVLQLSHCHLN------VNSSFLLHQHHLKFLDLSHNQLVGNFPTWLLQN---NTGLEVLILWNNSFSGILPR---- 221 (487)
Q Consensus 155 ~~L~~L~l~~~~~~------~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~---~~~L~~L~l~~~~~~~~~~~---- 221 (487)
..|+.+.+..|.+. .....+..+.+|+.|++..|.++-.....+... -+.|+.|.+..|-.......
T Consensus 185 ~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~~lrEL~lnDClls~~G~~~v~~ 264 (388)
T COG5238 185 ENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWNLLRELRLNDCLLSNEGVKSVLR 264 (388)
T ss_pred cCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcccchhhhccccchhhccccHHHHHH
Confidence 45666666666551 111234456677777777776653333322222 23456666666654432211
Q ss_pred -CCCcCCCCCcEEEccCCcc
Q 036411 222 -LPNAKYDKLRHLDISTNNF 240 (487)
Q Consensus 222 -~~~~~~~~L~~L~l~~~~~ 240 (487)
..-...|+|..|...++..
T Consensus 265 ~f~e~~~p~l~~L~~~Yne~ 284 (388)
T COG5238 265 RFNEKFVPNLMPLPGDYNER 284 (388)
T ss_pred HhhhhcCCCccccccchhhh
Confidence 1112346666776666644
|
|
| >COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.29 E-value=6.1e-07 Score=75.78 Aligned_cols=184 Identities=20% Similarity=0.205 Sum_probs=88.5
Q ss_pred cCCCCCcEEECCCCccCCCCCcC----CcCCCCccEEEcCCCcccccc-------------cccccCCCcccEEEccCCc
Q 036411 299 SSCLSLETLDLSNNNFYGQLFPN----FMNLTHLSSLRLNNNHFSGKM-------------ADGLLSSTLLDVLDVSNNK 361 (487)
Q Consensus 299 ~~~~~L~~L~l~~~~~~~~~~~~----~~~~~~L~~L~l~~~~~~~~~-------------~~~~~~~~~L~~L~l~~~~ 361 (487)
-+||+|+..++++|-+....++. +.....|.+|.+++|.+.... .+-...-|.|+.+.+..|+
T Consensus 89 lkcp~l~~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrNR 168 (388)
T COG5238 89 LKCPRLQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNR 168 (388)
T ss_pred hcCCcceeeeccccccCcccchHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEeccch
Confidence 34555566666555543322222 233455555555555443111 1122345677777777776
Q ss_pred cCCCch----hhhcccccccEEecCCccccCcc-----hhhhccCcCCcEEeccCCcccc-----ccccccCCCcceEEE
Q 036411 362 LSGDIP----HWIGNFSVLWLLLMSENYLQGSI-----PVQLGNLESLEFIDISENGLSV-----SMVSLSNLSSVKHIY 427 (487)
Q Consensus 362 ~~~~~~----~~~~~~~~L~~L~l~~~~~~~~~-----~~~~~~~~~L~~l~l~~~~~~~-----~~~~~~~~~~L~~L~ 427 (487)
+..... ..+..=.+|+++-+..|.+.-.. ...+..+++|+.|++.+|.++. ....+..-+.|++|.
T Consensus 169 lengs~~~~a~~l~sh~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~~lrEL~ 248 (388)
T COG5238 169 LENGSKELSAALLESHENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWNLLRELR 248 (388)
T ss_pred hccCcHHHHHHHHHhhcCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcccchhhhcc
Confidence 643221 12222246666666666543211 1123456667777777666531 112222334466666
Q ss_pred eeCcccCCcchHh-hh-----ccCcceEEeCCCCcccc------cCcccc-cccCceeEEeccCCccC
Q 036411 428 LHNNAINGLIPIA-LL-----RSSTLLTLDLRDNKFFG------RIPHQI-NELSNLHFLLLRGNSLQ 482 (487)
Q Consensus 428 l~~~~~~~~~~~~-~~-----~~~~L~~L~l~~~~~~~------~~~~~l-~~l~~L~~L~l~~~~~~ 482 (487)
+.+|-++...... +. ..++|..|-..+|.+.+ ..+.+. ..+|-|..|.+.||+|.
T Consensus 249 lnDClls~~G~~~v~~~f~e~~~p~l~~L~~~Yne~~~~~i~~~~l~~~e~~~~p~L~~le~ngNr~~ 316 (388)
T COG5238 249 LNDCLLSNEGVKSVLRRFNEKFVPNLMPLPGDYNERRGGIILDISLNEFEQDAVPLLVDLERNGNRIK 316 (388)
T ss_pred ccchhhccccHHHHHHHhhhhcCCCccccccchhhhcCceeeeechhhhhhcccHHHHHHHHccCcch
Confidence 6666655432211 11 13566666666665421 122222 24566666666666654
|
|
| >KOG1859 consensus Leucine-rich repeat proteins [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.15 E-value=1.2e-07 Score=90.78 Aligned_cols=127 Identities=22% Similarity=0.275 Sum_probs=97.5
Q ss_pred CCccEEEcCCCcccccccccccCCCcccEEEccCCccCCCchhhhcccccccEEecCCccccCcchhhhccCcCCcEEec
Q 036411 326 THLSSLRLNNNHFSGKMADGLLSSTLLDVLDVSNNKLSGDIPHWIGNFSVLWLLLMSENYLQGSIPVQLGNLESLEFIDI 405 (487)
Q Consensus 326 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l 405 (487)
..|...+.++|.+. .....+.-++.++.|+++.|++++. +.+..|+.|++||++.|.+..........|. |+.|.+
T Consensus 164 n~L~~a~fsyN~L~-~mD~SLqll~ale~LnLshNk~~~v--~~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc~-L~~L~l 239 (1096)
T KOG1859|consen 164 NKLATASFSYNRLV-LMDESLQLLPALESLNLSHNKFTKV--DNLRRLPKLKHLDLSYNCLRHVPQLSMVGCK-LQLLNL 239 (1096)
T ss_pred hhHhhhhcchhhHH-hHHHHHHHHHHhhhhccchhhhhhh--HHHHhcccccccccccchhccccccchhhhh-heeeee
Confidence 35666777777765 5556666778999999999998743 4788999999999999988743333334444 999999
Q ss_pred cCCccccccccccCCCcceEEEeeCcccCCcc-hHhhhccCcceEEeCCCCcc
Q 036411 406 SENGLSVSMVSLSNLSSVKHIYLHNNAINGLI-PIALLRSSTLLTLDLRDNKF 457 (487)
Q Consensus 406 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~-~~~~~~~~~L~~L~l~~~~~ 457 (487)
++|.++ ...++.++.+|+.||++.|-+...- -..+..+..|+.|+|-||++
T Consensus 240 rnN~l~-tL~gie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl 291 (1096)
T KOG1859|consen 240 RNNALT-TLRGIENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPL 291 (1096)
T ss_pred cccHHH-hhhhHHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCcc
Confidence 999887 5556668899999999999877532 23456678899999999998
|
|
| >KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.14 E-value=8.9e-07 Score=88.46 Aligned_cols=152 Identities=19% Similarity=0.157 Sum_probs=91.6
Q ss_pred ccccEEecCCccc-cccccccc-cCCCCCcEEEccCccccCCcccccccCCCCCcEEECCCCccCCCcchhccCCCCccE
Q 036411 8 KQLKILNLGFNFF-IDSILPYL-NTLTSLTTLNLRYNKIEGSRTKQGICNLKNLLELDLSSNNFEGHLPQCLNNLTHLKV 85 (487)
Q Consensus 8 ~~L~~L~l~~~~~-~~~~~~~~-~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~ 85 (487)
.+|+.|+++|... ...-+..+ ..+|.|++|.+.+-.+..........++|+|..||+|++.+.+. .+++++++|+.
T Consensus 122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl--~GIS~LknLq~ 199 (699)
T KOG3665|consen 122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL--SGISRLKNLQV 199 (699)
T ss_pred HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc--HHHhccccHHH
Confidence 4678888877532 22122222 45788888888887665333334467788888888888888754 66788888888
Q ss_pred EeccCccccC-CccccccCCCCCcEEeccccccCcch-----hHHHhhccccceEEEeccCCCccccccccccCCCCCce
Q 036411 86 LDISYNQLSG-NFPSVLTNLTSLEYLDLSFIDFQGTF-----LINSLANHSKLEVLVLSSGNDMLQVKTENWLPTYPLKV 159 (487)
Q Consensus 86 L~l~~~~~~~-~~~~~~~~~~~L~~L~l~~~~~~~~~-----~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~ 159 (487)
|.+++-.+.. ..-..+..+++|+.||+|........ ..+.-..+|+||.|+.++..-............++|+.
T Consensus 200 L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~~~le~ll~sH~~L~~ 279 (699)
T KOG3665|consen 200 LSMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDINEEILEELLNSHPNLQQ 279 (699)
T ss_pred HhccCCCCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchhHHHHHHHHHhCccHhh
Confidence 8887765542 11224456888888888876533222 12334456777777776544333333333344444444
Q ss_pred ee
Q 036411 160 LQ 161 (487)
Q Consensus 160 L~ 161 (487)
+.
T Consensus 280 i~ 281 (699)
T KOG3665|consen 280 IA 281 (699)
T ss_pred hh
Confidence 43
|
|
| >KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.13 E-value=7.7e-07 Score=88.89 Aligned_cols=37 Identities=22% Similarity=0.286 Sum_probs=28.8
Q ss_pred cCCcccEEeCCCCcccCCcchHhhhcCCCCcEEEccc
Q 036411 176 HQHHLKFLDLSHNQLVGNFPTWLLQNNTGLEVLILWN 212 (487)
Q Consensus 176 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~ 212 (487)
.+|+|+.||.+++.+...+.+.+....|+|+.+..-+
T Consensus 248 ~LpeLrfLDcSgTdi~~~~le~ll~sH~~L~~i~~~~ 284 (699)
T KOG3665|consen 248 VLPELRFLDCSGTDINEEILEELLNSHPNLQQIAALD 284 (699)
T ss_pred cCccccEEecCCcchhHHHHHHHHHhCccHhhhhhhh
Confidence 4789999999998888777777777778887776544
|
|
| >PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A | Back alignment and domain information |
|---|
Probab=98.09 E-value=7.5e-06 Score=64.39 Aligned_cols=82 Identities=20% Similarity=0.333 Sum_probs=28.4
Q ss_pred hhccccCcEEecccccCCCCCchhhhcCCCCCcEEECCCCccCCCCCcCCcCCCCccEEEcCCCcccccccccccCCCcc
Q 036411 273 ISEMKELITLDLSRNNFSGELPRSIFSSCLSLETLDLSNNNFYGQLFPNFMNLTHLSSLRLNNNHFSGKMADGLLSSTLL 352 (487)
Q Consensus 273 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L 352 (487)
+.++++|+.+.+.+ .+. .++...|.++++|+.+.+.++ +.......|..+++++.+.+.+ .+.......|..++.|
T Consensus 8 F~~~~~l~~i~~~~-~~~-~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~l 83 (129)
T PF13306_consen 8 FYNCSNLESITFPN-TIK-KIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCTNL 83 (129)
T ss_dssp TTT-TT--EEEETS-T---EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-TTE
T ss_pred HhCCCCCCEEEECC-Cee-EeChhhccccccccccccccc-ccccceeeeecccccccccccc-cccccccccccccccc
Confidence 44444455555442 232 444444444444555554442 3222333344444444444433 2221223333344444
Q ss_pred cEEEcc
Q 036411 353 DVLDVS 358 (487)
Q Consensus 353 ~~L~l~ 358 (487)
+.+++.
T Consensus 84 ~~i~~~ 89 (129)
T PF13306_consen 84 KNIDIP 89 (129)
T ss_dssp CEEEET
T ss_pred cccccC
Confidence 444443
|
|
| >PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A | Back alignment and domain information |
|---|
Probab=98.05 E-value=1.1e-05 Score=63.44 Aligned_cols=124 Identities=17% Similarity=0.182 Sum_probs=50.2
Q ss_pred ccccCCCcccEEEccCCccCCCchhhhcccccccEEecCCccccCcchhhhccCcCCcEEeccCCccccccccccCCCcc
Q 036411 344 DGLLSSTLLDVLDVSNNKLSGDIPHWIGNFSVLWLLLMSENYLQGSIPVQLGNLESLEFIDISENGLSVSMVSLSNLSSV 423 (487)
Q Consensus 344 ~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~L 423 (487)
.+|.++.+|+.+.+.. .+.......|..+++++.+.+.++ +.......|..+++++.+.+.++-.......+..+++|
T Consensus 6 ~~F~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~~~~~i~~~~F~~~~~l 83 (129)
T PF13306_consen 6 NAFYNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPNNLKSIGDNAFSNCTNL 83 (129)
T ss_dssp TTTTT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETSTT-EE-TTTTTT-TTE
T ss_pred HHHhCCCCCCEEEECC-CeeEeChhhccccccccccccccc-ccccceeeeecccccccccccccccccccccccccccc
Confidence 3444555566655553 233334445556656666666553 33333445556666666666553323334444456666
Q ss_pred eEEEeeCcccCCcchHhhhccCcceEEeCCCCcccccCcccccccCcee
Q 036411 424 KHIYLHNNAINGLIPIALLRSSTLLTLDLRDNKFFGRIPHQINELSNLH 472 (487)
Q Consensus 424 ~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~ 472 (487)
+.+++..+ +......++.++ +|+.+.+.+ .+......+|.++++|+
T Consensus 84 ~~i~~~~~-~~~i~~~~f~~~-~l~~i~~~~-~~~~i~~~~F~~~~~l~ 129 (129)
T PF13306_consen 84 KNIDIPSN-ITEIGSSSFSNC-NLKEINIPS-NITKIEENAFKNCTKLK 129 (129)
T ss_dssp CEEEETTT--BEEHTTTTTT--T--EEE-TT-B-SS----GGG------
T ss_pred cccccCcc-ccEEchhhhcCC-CceEEEECC-CccEECCccccccccCC
Confidence 66666543 444445556665 677776664 33344445666666553
|
|
| >KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=97.96 E-value=1.5e-05 Score=64.62 Aligned_cols=85 Identities=24% Similarity=0.180 Sum_probs=38.3
Q ss_pred hccCcCCcEEeccCCcccccccccc-CCCcceEEEeeCcccCCcch-HhhhccCcceEEeCCCCcccc---cCccccccc
Q 036411 394 LGNLESLEFIDISENGLSVSMVSLS-NLSSVKHIYLHNNAINGLIP-IALLRSSTLLTLDLRDNKFFG---RIPHQINEL 468 (487)
Q Consensus 394 ~~~~~~L~~l~l~~~~~~~~~~~~~-~~~~L~~L~l~~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~---~~~~~l~~l 468 (487)
|+.++.|.+|.+.+|+++.+.+.+. .+|+|+.|.+.+|++..... ..+..|+.|+.|.+-+|+++. .-..++..+
T Consensus 60 lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~Ltll~Npv~~k~~YR~yvl~kl 139 (233)
T KOG1644|consen 60 LPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYLTLLGNPVEHKKNYRLYVLYKL 139 (233)
T ss_pred CCCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcchhccCCccceeeecCCchhcccCceeEEEEec
Confidence 3444445555555555443333333 33445555555554432211 223445555555555555431 111244555
Q ss_pred CceeEEeccC
Q 036411 469 SNLHFLLLRG 478 (487)
Q Consensus 469 ~~L~~L~l~~ 478 (487)
|+|+.||.++
T Consensus 140 p~l~~LDF~k 149 (233)
T KOG1644|consen 140 PSLRTLDFQK 149 (233)
T ss_pred CcceEeehhh
Confidence 5555555543
|
|
| >KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=97.91 E-value=1.9e-05 Score=63.99 Aligned_cols=107 Identities=21% Similarity=0.194 Sum_probs=77.8
Q ss_pred ccCceEEEEccCCCCCCCcchhhhccccCcEEecccccCCCCCchhhhcCCCCCcEEECCCCccCCCC-CcCCcCCCCcc
Q 036411 251 VFQKLIYLDVSKNSFEGNIPYSISEMKELITLDLSRNNFSGELPRSIFSSCLSLETLDLSNNNFYGQL-FPNFMNLTHLS 329 (487)
Q Consensus 251 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~-~~~~~~~~~L~ 329 (487)
...+...+++++|.+. ....++.++.|.+|.+++|.++ .+...+-.-+++|+.|.+.+|.+.+.. ...++.+|.|+
T Consensus 40 ~~d~~d~iDLtdNdl~--~l~~lp~l~rL~tLll~nNrIt-~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~ 116 (233)
T KOG1644|consen 40 TLDQFDAIDLTDNDLR--KLDNLPHLPRLHTLLLNNNRIT-RIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLE 116 (233)
T ss_pred cccccceecccccchh--hcccCCCccccceEEecCCcce-eeccchhhhccccceEEecCcchhhhhhcchhccCCccc
Confidence 3456778888888875 3346788889999999999998 777666566788999999998875322 34567788888
Q ss_pred EEEcCCCcccccc---cccccCCCcccEEEccCC
Q 036411 330 SLRLNNNHFSGKM---ADGLLSSTLLDVLDVSNN 360 (487)
Q Consensus 330 ~L~l~~~~~~~~~---~~~~~~~~~L~~L~l~~~ 360 (487)
.|.+.+|++.... ...+...++|+.||+.+-
T Consensus 117 ~Ltll~Npv~~k~~YR~yvl~klp~l~~LDF~kV 150 (233)
T KOG1644|consen 117 YLTLLGNPVEHKKNYRLYVLYKLPSLRTLDFQKV 150 (233)
T ss_pred eeeecCCchhcccCceeEEEEecCcceEeehhhh
Confidence 8888888876322 234456677777777654
|
|
| >KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.90 E-value=1.2e-06 Score=66.14 Aligned_cols=106 Identities=16% Similarity=0.168 Sum_probs=69.1
Q ss_pred EEEcCCCccc--ccccccccCCCcccEEEccCCccCCCchhhhcccccccEEecCCccccCcchhhhccCcCCcEEeccC
Q 036411 330 SLRLNNNHFS--GKMADGLLSSTLLDVLDVSNNKLSGDIPHWIGNFSVLWLLLMSENYLQGSIPVQLGNLESLEFIDISE 407 (487)
Q Consensus 330 ~L~l~~~~~~--~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~ 407 (487)
.++++.|++. ......+.....|+.+++++|.+.+.-+..-...+.++.+++++|.++ ..|..++.++.|+.++++.
T Consensus 31 ~ldLssc~lm~i~davy~l~~~~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~neis-dvPeE~Aam~aLr~lNl~~ 109 (177)
T KOG4579|consen 31 FLDLSSCQLMYIADAVYMLSKGYELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNEIS-DVPEELAAMPALRSLNLRF 109 (177)
T ss_pred hcccccchhhHHHHHHHHHhCCceEEEEecccchhhhCCHHHhhccchhhhhhcchhhhh-hchHHHhhhHHhhhccccc
Confidence 3445555543 122223344556777777777776555555556667777788877777 5666677777888888888
Q ss_pred CccccccccccCCCcceEEEeeCcccCCc
Q 036411 408 NGLSVSMVSLSNLSSVKHIYLHNNAINGL 436 (487)
Q Consensus 408 ~~~~~~~~~~~~~~~L~~L~l~~~~~~~~ 436 (487)
|++...+..+..+.++..|+..+|....+
T Consensus 110 N~l~~~p~vi~~L~~l~~Lds~~na~~ei 138 (177)
T KOG4579|consen 110 NPLNAEPRVIAPLIKLDMLDSPENARAEI 138 (177)
T ss_pred CccccchHHHHHHHhHHHhcCCCCccccC
Confidence 87776666666677777777777765543
|
|
| >KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.80 E-value=5.4e-06 Score=81.74 Aligned_cols=226 Identities=22% Similarity=0.084 Sum_probs=101.3
Q ss_pred CCCCCcEEEccCcc-ccCCcccccccCCCCCcEEECCCC-ccCCCc----chhccCCCCccEEeccCcc-ccCCcccccc
Q 036411 30 TLTSLTTLNLRYNK-IEGSRTKQGICNLKNLLELDLSSN-NFEGHL----PQCLNNLTHLKVLDISYNQ-LSGNFPSVLT 102 (487)
Q Consensus 30 ~~~~L~~L~l~~~~-~~~~~~~~~~~~~~~L~~L~l~~~-~~~~~~----~~~~~~l~~L~~L~l~~~~-~~~~~~~~~~ 102 (487)
.++.|+.|.+.++. +...........+++|++|+++++ ...... ......+++|+.++++++. +++..-..+.
T Consensus 186 ~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~ 265 (482)
T KOG1947|consen 186 SCPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALA 265 (482)
T ss_pred hCchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHHH
Confidence 35566666665553 221112233455666666666552 111011 1122345566666666655 4433333332
Q ss_pred -CCCCCcEEeccccc-cCcchhHHHhhccccceEEEeccCCCcccccc-ccccCCCCCceeecccc--------------
Q 036411 103 -NLTSLEYLDLSFID-FQGTFLINSLANHSKLEVLVLSSGNDMLQVKT-ENWLPTYPLKVLQLSHC-------------- 165 (487)
Q Consensus 103 -~~~~L~~L~l~~~~-~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~-~~~~~~~~L~~L~l~~~-------------- 165 (487)
.|++|+.|.+.+|. ++..........+++|+++++.++..+..... .....+++++.+.+...
T Consensus 266 ~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~~d~~l~~~~~~c~~l~~l~~~~~~~c~~l~~~~l~~~ 345 (482)
T KOG1947|consen 266 SRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGLTDSGLEALLKNCPNLRELKLLSLNGCPSLTDLSLSGL 345 (482)
T ss_pred hhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccchHHHHHHHHHhCcchhhhhhhhcCCCccHHHHHHHHh
Confidence 25666666655554 45555555555666666666665554422111 11122333333332221
Q ss_pred cc----cccccccccCCcccEEeCCCCcccCCcchHhhhcCCCCcEEEcccCCCCCCCCCCCCcCCCCCcEEEccCCccc
Q 036411 166 HL----NVNSSFLLHQHHLKFLDLSHNQLVGNFPTWLLQNNTGLEVLILWNNSFSGILPRLPNAKYDKLRHLDISTNNFS 241 (487)
Q Consensus 166 ~~----~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 241 (487)
.. .........+++++.+.+..+...+........+|+.++ ..+.... .....++.|.+..+...
T Consensus 346 ~~~~~d~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~l~gc~~l~-~~l~~~~----------~~~~~l~~L~l~~~~~~ 414 (482)
T KOG1947|consen 346 LTLTSDDLAELILRSCPKLTDLSLSYCGISDLGLELSLRGCPNLT-ESLELRL----------CRSDSLRVLNLSDCRLV 414 (482)
T ss_pred hccCchhHhHHHHhcCCCcchhhhhhhhccCcchHHHhcCCcccc-hHHHHHh----------ccCCccceEecccCccc
Confidence 11 111123344566666666666533222234445555552 2211110 11122677888777543
Q ss_pred cc-CCcccccccCceEEEEccCCCCC
Q 036411 242 GK-LPENLGIVFQKLIYLDVSKNSFE 266 (487)
Q Consensus 242 ~~-~~~~~~~~~~~L~~L~l~~~~~~ 266 (487)
.. ........+..++.+++.++...
T Consensus 415 t~~~l~~~~~~~~~~~~l~~~~~~~~ 440 (482)
T KOG1947|consen 415 TDKGLRCLADSCSNLKDLDLSGCRVI 440 (482)
T ss_pred cccchHHHhhhhhccccCCccCcccc
Confidence 11 11111111456777777777643
|
|
| >PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B | Back alignment and domain information |
|---|
Probab=97.76 E-value=3.4e-05 Score=46.80 Aligned_cols=36 Identities=50% Similarity=0.706 Sum_probs=14.7
Q ss_pred CCcEEECCCCccCCCcchhccCCCCccEEeccCcccc
Q 036411 58 NLLELDLSSNNFEGHLPQCLNNLTHLKVLDISYNQLS 94 (487)
Q Consensus 58 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~ 94 (487)
+|++|++++|++. .++..++++++|+.|++++|.++
T Consensus 2 ~L~~L~l~~N~i~-~l~~~l~~l~~L~~L~l~~N~i~ 37 (44)
T PF12799_consen 2 NLEELDLSNNQIT-DLPPELSNLPNLETLNLSNNPIS 37 (44)
T ss_dssp T-SEEEETSSS-S-SHGGHGTTCTTSSEEEETSSCCS
T ss_pred cceEEEccCCCCc-ccCchHhCCCCCCEEEecCCCCC
Confidence 3444444444444 23333444444444444444443
|
... |
| >KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.74 E-value=7.9e-06 Score=80.58 Aligned_cols=248 Identities=20% Similarity=0.108 Sum_probs=140.6
Q ss_pred CCCcEEEccCcc--ccCCcccccccCCCCCcEEECCCCccCCC--cchhccCCCCccEEeccCc-c-ccC---Ccccccc
Q 036411 32 TSLTTLNLRYNK--IEGSRTKQGICNLKNLLELDLSSNNFEGH--LPQCLNNLTHLKVLDISYN-Q-LSG---NFPSVLT 102 (487)
Q Consensus 32 ~~L~~L~l~~~~--~~~~~~~~~~~~~~~L~~L~l~~~~~~~~--~~~~~~~l~~L~~L~l~~~-~-~~~---~~~~~~~ 102 (487)
..++.+....+. ............++.|+.+.+..+.-... .......+++|+.|+++++ . +.. .......
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~ 240 (482)
T KOG1947|consen 161 ANLESLSLSCCGSLLLDKILLRLLSSCPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLS 240 (482)
T ss_pred HHHheeeeecccccccHHHHHHHHhhCchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhh
Confidence 345555554443 22112222345589999999998855433 3455678999999999873 2 221 1123445
Q ss_pred CCCCCcEEeccccc-cCcchhHHHhhccccceEEEeccCCCccccccc-cccCCCCCceeeccccccc---ccccccccC
Q 036411 103 NLTSLEYLDLSFID-FQGTFLINSLANHSKLEVLVLSSGNDMLQVKTE-NWLPTYPLKVLQLSHCHLN---VNSSFLLHQ 177 (487)
Q Consensus 103 ~~~~L~~L~l~~~~-~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~-~~~~~~~L~~L~l~~~~~~---~~~~~~~~~ 177 (487)
.+++|+.++++++. ++..........+++|+.+.+..|..++..... ....++.|++|+++.|... .+......+
T Consensus 241 ~~~~L~~l~l~~~~~isd~~l~~l~~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~~d~~l~~~~~~c 320 (482)
T KOG1947|consen 241 ICRKLKSLDLSGCGLVTDIGLSALASRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGLTDSGLEALLKNC 320 (482)
T ss_pred hcCCcCccchhhhhccCchhHHHHHhhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccchHHHHHHHHHhC
Confidence 68999999999988 554444445556999999998778765444433 3356678999999988761 233334456
Q ss_pred CcccEEeCCCCc----cc------------CCcchHhhhcCCCCcEEEcccCCCCCCCCCCCCcCCCCCcEEEccCCccc
Q 036411 178 HHLKFLDLSHNQ----LV------------GNFPTWLLQNNTGLEVLILWNNSFSGILPRLPNAKYDKLRHLDISTNNFS 241 (487)
Q Consensus 178 ~~L~~L~l~~~~----~~------------~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 241 (487)
++++.+.+.... ++ +.........+++++.+.+..+.............++.+. ..+..+
T Consensus 321 ~~l~~l~~~~~~~c~~l~~~~l~~~~~~~~d~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~l~gc~~l~-~~l~~~--- 396 (482)
T KOG1947|consen 321 PNLRELKLLSLNGCPSLTDLSLSGLLTLTSDDLAELILRSCPKLTDLSLSYCGISDLGLELSLRGCPNLT-ESLELR--- 396 (482)
T ss_pred cchhhhhhhhcCCCccHHHHHHHHhhccCchhHhHHHHhcCCCcchhhhhhhhccCcchHHHhcCCcccc-hHHHHH---
Confidence 766665544332 11 1222233445666666666665522222112233444442 111111
Q ss_pred ccCCcccccccCceEEEEccCCCCCC-Ccchhhhc-cccCcEEecccccCC
Q 036411 242 GKLPENLGIVFQKLIYLDVSKNSFEG-NIPYSISE-MKELITLDLSRNNFS 290 (487)
Q Consensus 242 ~~~~~~~~~~~~~L~~L~l~~~~~~~-~~~~~~~~-~~~L~~L~l~~~~~~ 290 (487)
......++.|+++.+.... ........ +..++.+++.++...
T Consensus 397 -------~~~~~~l~~L~l~~~~~~t~~~l~~~~~~~~~~~~l~~~~~~~~ 440 (482)
T KOG1947|consen 397 -------LCRSDSLRVLNLSDCRLVTDKGLRCLADSCSNLKDLDLSGCRVI 440 (482)
T ss_pred -------hccCCccceEecccCccccccchHHHhhhhhccccCCccCcccc
Confidence 0011227899998886432 22222222 666777888777654
|
|
| >PRK15386 type III secretion protein GogB; Provisional | Back alignment and domain information |
|---|
Probab=97.72 E-value=0.00016 Score=66.86 Aligned_cols=138 Identities=13% Similarity=0.115 Sum_probs=87.4
Q ss_pred cCCCCCcEEECCCCccCCCCCcCCcCCCCccEEEcCCCcccccccccccCCCcccEEEccCCccCCCchhhhcccccccE
Q 036411 299 SSCLSLETLDLSNNNFYGQLFPNFMNLTHLSSLRLNNNHFSGKMADGLLSSTLLDVLDVSNNKLSGDIPHWIGNFSVLWL 378 (487)
Q Consensus 299 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~ 378 (487)
..+.+++.|++++|.+... + . -..+|++|.+.+|.-....+..+ .++|+.|++++|.-...+| ++|+.
T Consensus 49 ~~~~~l~~L~Is~c~L~sL-P-~--LP~sLtsL~Lsnc~nLtsLP~~L--P~nLe~L~Ls~Cs~L~sLP------~sLe~ 116 (426)
T PRK15386 49 EEARASGRLYIKDCDIESL-P-V--LPNELTEITIENCNNLTTLPGSI--PEGLEKLTVCHCPEISGLP------ESVRS 116 (426)
T ss_pred HHhcCCCEEEeCCCCCccc-C-C--CCCCCcEEEccCCCCcccCCchh--hhhhhheEccCcccccccc------cccce
Confidence 4478999999999977643 3 2 23579999999876544555444 3689999999994322344 45777
Q ss_pred EecCCccccCcchhhhccC-cCCcEEeccCCccc-cccccccCCCcceEEEeeCcccCCcchHhhhccCcceEEeCCCCc
Q 036411 379 LLMSENYLQGSIPVQLGNL-ESLEFIDISENGLS-VSMVSLSNLSSVKHIYLHNNAINGLIPIALLRSSTLLTLDLRDNK 456 (487)
Q Consensus 379 L~l~~~~~~~~~~~~~~~~-~~L~~l~l~~~~~~-~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 456 (487)
|.+.++.... +..+ ++|+.|.+.++.-. .....-.-.++|++|++.+|.... .|..+. .+|+.|.++.+.
T Consensus 117 L~L~~n~~~~-----L~~LPssLk~L~I~~~n~~~~~~lp~~LPsSLk~L~Is~c~~i~-LP~~LP--~SLk~L~ls~n~ 188 (426)
T PRK15386 117 LEIKGSATDS-----IKNVPNGLTSLSINSYNPENQARIDNLISPSLKTLSLTGCSNII-LPEKLP--ESLQSITLHIEQ 188 (426)
T ss_pred EEeCCCCCcc-----cccCcchHhheeccccccccccccccccCCcccEEEecCCCccc-Cccccc--ccCcEEEecccc
Confidence 7777654331 1222 46778877543311 000000123689999999988664 344444 689999998764
|
|
| >PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B | Back alignment and domain information |
|---|
Probab=97.68 E-value=4.4e-05 Score=46.29 Aligned_cols=36 Identities=33% Similarity=0.440 Sum_probs=18.0
Q ss_pred cceEEEeeCcccCCcchHhhhccCcceEEeCCCCccc
Q 036411 422 SVKHIYLHNNAINGLIPIALLRSSTLLTLDLRDNKFF 458 (487)
Q Consensus 422 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 458 (487)
+|++|++++|++++. +..++.+++|+.|++++|+++
T Consensus 2 ~L~~L~l~~N~i~~l-~~~l~~l~~L~~L~l~~N~i~ 37 (44)
T PF12799_consen 2 NLEELDLSNNQITDL-PPELSNLPNLETLNLSNNPIS 37 (44)
T ss_dssp T-SEEEETSSS-SSH-GGHGTTCTTSSEEEETSSCCS
T ss_pred cceEEEccCCCCccc-CchHhCCCCCCEEEecCCCCC
Confidence 455555555555543 223555555555555555553
|
... |
| >KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.68 E-value=2.5e-06 Score=64.42 Aligned_cols=107 Identities=26% Similarity=0.346 Sum_probs=70.5
Q ss_pred ceEEEEccCCCCCC--CcchhhhccccCcEEecccccCCCCCchhhhcCCCCCcEEECCCCccCCCCCcCCcCCCCccEE
Q 036411 254 KLIYLDVSKNSFEG--NIPYSISEMKELITLDLSRNNFSGELPRSIFSSCLSLETLDLSNNNFYGQLFPNFMNLTHLSSL 331 (487)
Q Consensus 254 ~L~~L~l~~~~~~~--~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L 331 (487)
.+..++++.|++.. ...+.+..-..|..+++++|.+. .+|..+-..++.++.+++.+|.+.+ .|.+++.++.|+.+
T Consensus 28 E~h~ldLssc~lm~i~davy~l~~~~el~~i~ls~N~fk-~fp~kft~kf~t~t~lNl~~neisd-vPeE~Aam~aLr~l 105 (177)
T KOG4579|consen 28 ELHFLDLSSCQLMYIADAVYMLSKGYELTKISLSDNGFK-KFPKKFTIKFPTATTLNLANNEISD-VPEELAAMPALRSL 105 (177)
T ss_pred HhhhcccccchhhHHHHHHHHHhCCceEEEEecccchhh-hCCHHHhhccchhhhhhcchhhhhh-chHHHhhhHHhhhc
Confidence 34556666665431 22344555566777788888777 7777766666777888888777764 44557777888888
Q ss_pred EcCCCcccccccccccCCCcccEEEccCCccC
Q 036411 332 RLNNNHFSGKMADGLLSSTLLDVLDVSNNKLS 363 (487)
Q Consensus 332 ~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 363 (487)
+++.|++. ..+..+..+.++..|+..++...
T Consensus 106 Nl~~N~l~-~~p~vi~~L~~l~~Lds~~na~~ 136 (177)
T KOG4579|consen 106 NLRFNPLN-AEPRVIAPLIKLDMLDSPENARA 136 (177)
T ss_pred ccccCccc-cchHHHHHHHhHHHhcCCCCccc
Confidence 88887776 44555545666777777777654
|
|
| >PRK15386 type III secretion protein GogB; Provisional | Back alignment and domain information |
|---|
Probab=97.63 E-value=0.0004 Score=64.23 Aligned_cols=54 Identities=19% Similarity=0.206 Sum_probs=25.3
Q ss_pred CCCCcEEEccCCcccccCCcccccccCceEEEEccCCCCCCCcchhhhccccCcEEecccc
Q 036411 227 YDKLRHLDISTNNFSGKLPENLGIVFQKLIYLDVSKNSFEGNIPYSISEMKELITLDLSRN 287 (487)
Q Consensus 227 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~ 287 (487)
+.+++.|++++|.+. .+| ..+++|++|.+++|.-....+..+ .++|+.|.+++|
T Consensus 51 ~~~l~~L~Is~c~L~-sLP----~LP~sLtsL~Lsnc~nLtsLP~~L--P~nLe~L~Ls~C 104 (426)
T PRK15386 51 ARASGRLYIKDCDIE-SLP----VLPNELTEITIENCNNLTTLPGSI--PEGLEKLTVCHC 104 (426)
T ss_pred hcCCCEEEeCCCCCc-ccC----CCCCCCcEEEccCCCCcccCCchh--hhhhhheEccCc
Confidence 355556666655444 333 123456666665543322333222 234555555554
|
|
| >KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only] | Back alignment and domain information |
|---|
Probab=97.45 E-value=8e-05 Score=63.20 Aligned_cols=111 Identities=22% Similarity=0.170 Sum_probs=76.8
Q ss_pred cccccCCCCCcEEEccCccccCCcccccccCCCCCcEEECCCC--ccCCCcchhccCCCCccEEeccCccccC-Cccccc
Q 036411 25 LPYLNTLTSLTTLNLRYNKIEGSRTKQGICNLKNLLELDLSSN--NFEGHLPQCLNNLTHLKVLDISYNQLSG-NFPSVL 101 (487)
Q Consensus 25 ~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~--~~~~~~~~~~~~l~~L~~L~l~~~~~~~-~~~~~~ 101 (487)
..-...+..|+.|++.++.+++. ..|-.+++|++|+++.| .+...+......+|+|+++++++|++.. ..-...
T Consensus 36 ~gl~d~~~~le~ls~~n~gltt~---~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~pl 112 (260)
T KOG2739|consen 36 GGLTDEFVELELLSVINVGLTTL---TNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRPL 112 (260)
T ss_pred ccccccccchhhhhhhccceeec---ccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccchh
Confidence 33345567888888887776533 23777889999999999 5655555556678999999999998763 111345
Q ss_pred cCCCCCcEEeccccccCcch--hHHHhhccccceEEEec
Q 036411 102 TNLTSLEYLDLSFIDFQGTF--LINSLANHSKLEVLVLS 138 (487)
Q Consensus 102 ~~~~~L~~L~l~~~~~~~~~--~~~~~~~~~~L~~l~l~ 138 (487)
..+++|..|++..|..+... --..+.-+++|++++-.
T Consensus 113 ~~l~nL~~Ldl~n~~~~~l~dyre~vf~ll~~L~~LD~~ 151 (260)
T KOG2739|consen 113 KELENLKSLDLFNCSVTNLDDYREKVFLLLPSLKYLDGC 151 (260)
T ss_pred hhhcchhhhhcccCCccccccHHHHHHHHhhhhcccccc
Confidence 56778888899888765422 23466677777777653
|
|
| >KOG2123 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.44 E-value=6.3e-06 Score=70.06 Aligned_cols=102 Identities=25% Similarity=0.102 Sum_probs=58.7
Q ss_pred CCCCcEEEccCccccCCcccccccCCCCCcEEECCCCccCCCcchhccCCCCccEEeccCccccCC-ccccccCCCCCcE
Q 036411 31 LTSLTTLNLRYNKIEGSRTKQGICNLKNLLELDLSSNNFEGHLPQCLNNLTHLKVLDISYNQLSGN-FPSVLTNLTSLEY 109 (487)
Q Consensus 31 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~-~~~~~~~~~~L~~ 109 (487)
+.+.++||.++|.+.++.. ...++.|+.|.|+-|+|+.. ..+..|++|++|.+..|.|... -...+.++++|+.
T Consensus 18 l~~vkKLNcwg~~L~DIsi---c~kMp~lEVLsLSvNkIssL--~pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~ 92 (388)
T KOG2123|consen 18 LENVKKLNCWGCGLDDISI---CEKMPLLEVLSLSVNKISSL--APLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRT 92 (388)
T ss_pred HHHhhhhcccCCCccHHHH---HHhcccceeEEeeccccccc--hhHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhh
Confidence 3455666666666653322 45666677777776666543 3356667777777766665522 1124556667777
Q ss_pred EeccccccCcchh----HHHhhccccceEEEe
Q 036411 110 LDLSFIDFQGTFL----INSLANHSKLEVLVL 137 (487)
Q Consensus 110 L~l~~~~~~~~~~----~~~~~~~~~L~~l~l 137 (487)
|++..|...+... ..++..+|+|+.|+-
T Consensus 93 LWL~ENPCc~~ag~nYR~~VLR~LPnLkKLDn 124 (388)
T KOG2123|consen 93 LWLDENPCCGEAGQNYRRKVLRVLPNLKKLDN 124 (388)
T ss_pred HhhccCCcccccchhHHHHHHHHcccchhccC
Confidence 7776655433221 335666677766653
|
|
| >KOG2123 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.41 E-value=6.5e-06 Score=70.00 Aligned_cols=103 Identities=29% Similarity=0.238 Sum_probs=79.0
Q ss_pred ccccccEEecCCccccccccccccCCCCCcEEEccCccccCCcccccccCCCCCcEEECCCCccCCC-cchhccCCCCcc
Q 036411 6 SLKQLKILNLGFNFFIDSILPYLNTLTSLTTLNLRYNKIEGSRTKQGICNLKNLLELDLSSNNFEGH-LPQCLNNLTHLK 84 (487)
Q Consensus 6 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~-~~~~~~~l~~L~ 84 (487)
.+.+.+.|+..+|.+.++ +...+++.|++|.|+-|.|++.. .+..|++|++|+|+.|.|.+. ..+.+.++|+|+
T Consensus 17 dl~~vkKLNcwg~~L~DI--sic~kMp~lEVLsLSvNkIssL~---pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr 91 (388)
T KOG2123|consen 17 DLENVKKLNCWGCGLDDI--SICEKMPLLEVLSLSVNKISSLA---PLQRCTRLKELYLRKNCIESLDELEYLKNLPSLR 91 (388)
T ss_pred HHHHhhhhcccCCCccHH--HHHHhcccceeEEeeccccccch---hHHHHHHHHHHHHHhcccccHHHHHHHhcCchhh
Confidence 356788999999988665 44678999999999999997443 499999999999999998732 224578999999
Q ss_pred EEeccCccccCCcc-----ccccCCCCCcEEecc
Q 036411 85 VLDISYNQLSGNFP-----SVLTNLTSLEYLDLS 113 (487)
Q Consensus 85 ~L~l~~~~~~~~~~-----~~~~~~~~L~~L~l~ 113 (487)
.|.+..|.-....+ ..+..+++|++|+=.
T Consensus 92 ~LWL~ENPCc~~ag~nYR~~VLR~LPnLkKLDnv 125 (388)
T KOG2123|consen 92 TLWLDENPCCGEAGQNYRRKVLRVLPNLKKLDNV 125 (388)
T ss_pred hHhhccCCcccccchhHHHHHHHHcccchhccCc
Confidence 99998876432222 245567888887643
|
|
| >KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only] | Back alignment and domain information |
|---|
Probab=97.00 E-value=0.00047 Score=58.65 Aligned_cols=109 Identities=22% Similarity=0.191 Sum_probs=74.4
Q ss_pred chhhhcccccccEEecCCccccCcchhhhccCcCCcEEeccCC--cccccccccc-CCCcceEEEeeCcccCCc-chHhh
Q 036411 366 IPHWIGNFSVLWLLLMSENYLQGSIPVQLGNLESLEFIDISEN--GLSVSMVSLS-NLSSVKHIYLHNNAINGL-IPIAL 441 (487)
Q Consensus 366 ~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~--~~~~~~~~~~-~~~~L~~L~l~~~~~~~~-~~~~~ 441 (487)
+....-....|+.+.+.++.++ ....++.+|+|+.|.+++| ..+.....+. .+|+|+++++++|++... .-..+
T Consensus 35 ~~gl~d~~~~le~ls~~n~glt--t~~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~pl 112 (260)
T KOG2739|consen 35 LGGLTDEFVELELLSVINVGLT--TLTNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRPL 112 (260)
T ss_pred cccccccccchhhhhhhcccee--ecccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccchh
Confidence 3333444566677777776654 3356778899999999999 5544444444 669999999999988742 12345
Q ss_pred hccCcceEEeCCCCcccccCc---ccccccCceeEEec
Q 036411 442 LRSSTLLTLDLRDNKFFGRIP---HQINELSNLHFLLL 476 (487)
Q Consensus 442 ~~~~~L~~L~l~~~~~~~~~~---~~l~~l~~L~~L~l 476 (487)
+.+.+|..|++.+|..+..-- ..|.-+|+|+.|+-
T Consensus 113 ~~l~nL~~Ldl~n~~~~~l~dyre~vf~ll~~L~~LD~ 150 (260)
T KOG2739|consen 113 KELENLKSLDLFNCSVTNLDDYREKVFLLLPSLKYLDG 150 (260)
T ss_pred hhhcchhhhhcccCCccccccHHHHHHHHhhhhccccc
Confidence 667889999999998765222 25566788887763
|
|
| >KOG3864 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=95.41 E-value=0.0024 Score=52.22 Aligned_cols=83 Identities=17% Similarity=0.175 Sum_probs=52.0
Q ss_pred CCCcEEEccCccccCCcccccccCCCCCcEEECCCCccC-CCcchhcc-CCCCccEEeccCc-cccCCccccccCCCCCc
Q 036411 32 TSLTTLNLRYNKIEGSRTKQGICNLKNLLELDLSSNNFE-GHLPQCLN-NLTHLKVLDISYN-QLSGNFPSVLTNLTSLE 108 (487)
Q Consensus 32 ~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~-~~~~~~~~-~l~~L~~L~l~~~-~~~~~~~~~~~~~~~L~ 108 (487)
..++.++-+++.|.. ...+-+.+++.++.|.+.+|.-. +.-.+.++ -.++|+.|++++| .|++.....+.++++|+
T Consensus 101 ~~IeaVDAsds~I~~-eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr 179 (221)
T KOG3864|consen 101 VKIEAVDASDSSIMY-EGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLR 179 (221)
T ss_pred ceEEEEecCCchHHH-HHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhhH
Confidence 456667777776642 22344666777777777776532 21222233 2578888888877 47776667777788888
Q ss_pred EEecccc
Q 036411 109 YLDLSFI 115 (487)
Q Consensus 109 ~L~l~~~ 115 (487)
.|.+.+-
T Consensus 180 ~L~l~~l 186 (221)
T KOG3864|consen 180 RLHLYDL 186 (221)
T ss_pred HHHhcCc
Confidence 8777653
|
|
| >KOG3864 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=95.16 E-value=0.0029 Score=51.79 Aligned_cols=80 Identities=19% Similarity=0.204 Sum_probs=37.3
Q ss_pred CcEEECCCCccCCCCCcCCcCCCCccEEEcCCCccc-cccccccc-CCCcccEEEccCC-ccCCCchhhhcccccccEEe
Q 036411 304 LETLDLSNNNFYGQLFPNFMNLTHLSSLRLNNNHFS-GKMADGLL-SSTLLDVLDVSNN-KLSGDIPHWIGNFSVLWLLL 380 (487)
Q Consensus 304 L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~-~~~~~~~~-~~~~L~~L~l~~~-~~~~~~~~~~~~~~~L~~L~ 380 (487)
++.++-+++.+..+..+-+..+++++.|.+.+|.-- ....+.+. ..++|+.|++++| +|++....++..+++|+.|.
T Consensus 103 IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L~ 182 (221)
T KOG3864|consen 103 IEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLRRLH 182 (221)
T ss_pred EEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhhHHHH
Confidence 344444444444444444444445555555444321 11111111 2355666666666 45555555555555555555
Q ss_pred cCC
Q 036411 381 MSE 383 (487)
Q Consensus 381 l~~ 383 (487)
+.+
T Consensus 183 l~~ 185 (221)
T KOG3864|consen 183 LYD 185 (221)
T ss_pred hcC
Confidence 544
|
|
| >PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape [] | Back alignment and domain information |
|---|
Probab=94.89 E-value=0.01 Score=29.71 Aligned_cols=12 Identities=42% Similarity=0.454 Sum_probs=5.2
Q ss_pred ceEEeCCCCccc
Q 036411 447 LLTLDLRDNKFF 458 (487)
Q Consensus 447 L~~L~l~~~~~~ 458 (487)
|+.|++++|+++
T Consensus 2 L~~Ldls~n~l~ 13 (22)
T PF00560_consen 2 LEYLDLSGNNLT 13 (22)
T ss_dssp ESEEEETSSEES
T ss_pred ccEEECCCCcCE
Confidence 344444444443
|
LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A .... |
| >PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D | Back alignment and domain information |
|---|
Probab=94.38 E-value=0.024 Score=26.20 Aligned_cols=17 Identities=41% Similarity=0.561 Sum_probs=8.1
Q ss_pred CceeEEeccCCccCCCCC
Q 036411 469 SNLHFLLLRGNSLQGRIP 486 (487)
Q Consensus 469 ~~L~~L~l~~~~~~~~~p 486 (487)
++|++|++++|++. ++|
T Consensus 1 ~~L~~L~l~~n~L~-~lP 17 (17)
T PF13504_consen 1 PNLRTLDLSNNRLT-SLP 17 (17)
T ss_dssp TT-SEEEETSS--S-SE-
T ss_pred CccCEEECCCCCCC-CCc
Confidence 45677777777743 443
|
... |
| >PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape [] | Back alignment and domain information |
|---|
Probab=94.27 E-value=0.017 Score=28.88 Aligned_cols=17 Identities=53% Similarity=0.876 Sum_probs=14.5
Q ss_pred ceeEEeccCCccCCCCCC
Q 036411 470 NLHFLLLRGNSLQGRIPN 487 (487)
Q Consensus 470 ~L~~L~l~~~~~~~~~p~ 487 (487)
+|++|++++|+++ .+|+
T Consensus 1 ~L~~Ldls~n~l~-~ip~ 17 (22)
T PF00560_consen 1 NLEYLDLSGNNLT-SIPS 17 (22)
T ss_dssp TESEEEETSSEES-EEGT
T ss_pred CccEEECCCCcCE-eCCh
Confidence 5899999999988 6764
|
LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A .... |
| >KOG4308 consensus LRR-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=93.85 E-value=0.00037 Score=66.96 Aligned_cols=180 Identities=25% Similarity=0.220 Sum_probs=94.3
Q ss_pred CcEEecccccCCCCCch---hhhcCCCCCcEEECCCCccCCCCCcC----CcCC-CCccEEEcCCCcccccc----cccc
Q 036411 279 LITLDLSRNNFSGELPR---SIFSSCLSLETLDLSNNNFYGQLFPN----FMNL-THLSSLRLNNNHFSGKM----ADGL 346 (487)
Q Consensus 279 L~~L~l~~~~~~~~~~~---~~~~~~~~L~~L~l~~~~~~~~~~~~----~~~~-~~L~~L~l~~~~~~~~~----~~~~ 346 (487)
+..+.+.+|.+.+.... ..+...+.|+.+++++|.+.+..... +... ..++.|.+..|.++... ...+
T Consensus 89 l~~L~L~~~~l~~~~~~~l~~~l~t~~~L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g~~~l~~~L 168 (478)
T KOG4308|consen 89 LLHLSLANNRLGDRGAEELAQALKTLPTLGQLDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSCSLTSEGAAPLAAVL 168 (478)
T ss_pred HHHhhhhhCccccchHHHHHHHhcccccHhHhhcccCCCccHhHHHHHhhcccchHHHHHHHhhcccccccchHHHHHHH
Confidence 66777777777633221 22345667788888888775332221 2222 44556666666665322 2333
Q ss_pred cCCCcccEEEccCCccCC----Cchhhhc----ccccccEEecCCccccCc----chhhhccCcC-CcEEeccCCccc--
Q 036411 347 LSSTLLDVLDVSNNKLSG----DIPHWIG----NFSVLWLLLMSENYLQGS----IPVQLGNLES-LEFIDISENGLS-- 411 (487)
Q Consensus 347 ~~~~~L~~L~l~~~~~~~----~~~~~~~----~~~~L~~L~l~~~~~~~~----~~~~~~~~~~-L~~l~l~~~~~~-- 411 (487)
...+.++.++++.|.+.. .++..+. ...++++|.++.|.++.. ....+...++ +..+++..|.+-
T Consensus 169 ~~~~~l~~l~l~~n~l~~~g~~~l~~~l~~~~~~~~~le~L~L~~~~~t~~~c~~l~~~l~~~~~~~~el~l~~n~l~d~ 248 (478)
T KOG4308|consen 169 EKNEHLTELDLSLNGLIELGLLVLSQALESAASPLSSLETLKLSRCGVTSSSCALLDEVLASGESLLRELDLASNKLGDV 248 (478)
T ss_pred hcccchhHHHHHhcccchhhhHHHhhhhhhhhcccccHHHHhhhhcCcChHHHHHHHHHHhccchhhHHHHHHhcCcchH
Confidence 445667777777776532 1222222 355666777776665421 1122333344 455666666542
Q ss_pred ---cccccccCC-CcceEEEeeCcccCCcch----HhhhccCcceEEeCCCCccc
Q 036411 412 ---VSMVSLSNL-SSVKHIYLHNNAINGLIP----IALLRSSTLLTLDLRDNKFF 458 (487)
Q Consensus 412 ---~~~~~~~~~-~~L~~L~l~~~~~~~~~~----~~~~~~~~L~~L~l~~~~~~ 458 (487)
.....+..+ +.++.+++..|.++.... ..+..++.++.+.+++|+++
T Consensus 249 g~~~L~~~l~~~~~~l~~l~l~~nsi~~~~~~~L~~~l~~~~~l~~l~l~~n~l~ 303 (478)
T KOG4308|consen 249 GVEKLLPCLSVLSETLRVLDLSRNSITEKGVRDLAEVLVSCRQLEELSLSNNPLT 303 (478)
T ss_pred HHHHHHHHhcccchhhhhhhhhcCCccccchHHHHHHHhhhHHHHHhhcccCccc
Confidence 122223333 455666666666665332 33344566666666666664
|
|
| >KOG4308 consensus LRR-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=92.24 E-value=0.002 Score=61.97 Aligned_cols=203 Identities=23% Similarity=0.225 Sum_probs=124.7
Q ss_pred eEEEEccCCCCCCC----cchhhhccccCcEEecccccCCCCCchhhh---cCC-CCCcEEECCCCccCCCCC----cCC
Q 036411 255 LIYLDVSKNSFEGN----IPYSISEMKELITLDLSRNNFSGELPRSIF---SSC-LSLETLDLSNNNFYGQLF----PNF 322 (487)
Q Consensus 255 L~~L~l~~~~~~~~----~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~---~~~-~~L~~L~l~~~~~~~~~~----~~~ 322 (487)
+..+.+.+|.+.+. ....+...+.|+.|++++|.+.+......- ... ..+++|++..|.++.... ..+
T Consensus 89 l~~L~L~~~~l~~~~~~~l~~~l~t~~~L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g~~~l~~~L 168 (478)
T KOG4308|consen 89 LLHLSLANNRLGDRGAEELAQALKTLPTLGQLDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSCSLTSEGAAPLAAVL 168 (478)
T ss_pred HHHhhhhhCccccchHHHHHHHhcccccHhHhhcccCCCccHhHHHHHhhcccchHHHHHHHhhcccccccchHHHHHHH
Confidence 55566666665432 223445567777777877777633222221 111 356677777787764332 234
Q ss_pred cCCCCccEEEcCCCccccc----cccc----ccCCCcccEEEccCCccCCCc----hhhhccccc-ccEEecCCccccCc
Q 036411 323 MNLTHLSSLRLNNNHFSGK----MADG----LLSSTLLDVLDVSNNKLSGDI----PHWIGNFSV-LWLLLMSENYLQGS 389 (487)
Q Consensus 323 ~~~~~L~~L~l~~~~~~~~----~~~~----~~~~~~L~~L~l~~~~~~~~~----~~~~~~~~~-L~~L~l~~~~~~~~ 389 (487)
.....++.+++..|.+... .... +....++++|+++.|.++... ...+...+. +.++++..|.+.+.
T Consensus 169 ~~~~~l~~l~l~~n~l~~~g~~~l~~~l~~~~~~~~~le~L~L~~~~~t~~~c~~l~~~l~~~~~~~~el~l~~n~l~d~ 248 (478)
T KOG4308|consen 169 EKNEHLTELDLSLNGLIELGLLVLSQALESAASPLSSLETLKLSRCGVTSSSCALLDEVLASGESLLRELDLASNKLGDV 248 (478)
T ss_pred hcccchhHHHHHhcccchhhhHHHhhhhhhhhcccccHHHHhhhhcCcChHHHHHHHHHHhccchhhHHHHHHhcCcchH
Confidence 4567888888888877411 1222 234678999999999876422 223344455 67789999887643
Q ss_pred c----hhhhccC-cCCcEEeccCCccc-----cccccccCCCcceEEEeeCcccCCcch----HhhhccCcceEEeCCCC
Q 036411 390 I----PVQLGNL-ESLEFIDISENGLS-----VSMVSLSNLSSVKHIYLHNNAINGLIP----IALLRSSTLLTLDLRDN 455 (487)
Q Consensus 390 ~----~~~~~~~-~~L~~l~l~~~~~~-----~~~~~~~~~~~L~~L~l~~~~~~~~~~----~~~~~~~~L~~L~l~~~ 455 (487)
. ...+... ++++.+++.+|.+. .....+..++.++++.+..|.+..... +.......+..+-+.++
T Consensus 249 g~~~L~~~l~~~~~~l~~l~l~~nsi~~~~~~~L~~~l~~~~~l~~l~l~~n~l~~~~~~~~~~~l~~~~~~~~~~l~~~ 328 (478)
T KOG4308|consen 249 GVEKLLPCLSVLSETLRVLDLSRNSITEKGVRDLAEVLVSCRQLEELSLSNNPLTDYGVELLLEALERKTPLLHLVLGGT 328 (478)
T ss_pred HHHHHHHHhcccchhhhhhhhhcCCccccchHHHHHHHhhhHHHHHhhcccCccccHHHHHHHHHhhhcccchhhhcccc
Confidence 2 2234445 67899999999884 344555578899999999999875322 22333455666666655
Q ss_pred cc
Q 036411 456 KF 457 (487)
Q Consensus 456 ~~ 457 (487)
..
T Consensus 329 ~~ 330 (478)
T KOG4308|consen 329 GK 330 (478)
T ss_pred Cc
Confidence 43
|
|
| >PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A | Back alignment and domain information |
|---|
Probab=89.90 E-value=0.051 Score=27.78 Aligned_cols=12 Identities=50% Similarity=0.700 Sum_probs=4.5
Q ss_pred cceEEeCCCCcc
Q 036411 446 TLLTLDLRDNKF 457 (487)
Q Consensus 446 ~L~~L~l~~~~~ 457 (487)
+|+.|+|++|++
T Consensus 3 ~L~~L~l~~n~i 14 (24)
T PF13516_consen 3 NLETLDLSNNQI 14 (24)
T ss_dssp T-SEEE-TSSBE
T ss_pred CCCEEEccCCcC
Confidence 444444444444
|
... |
| >smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily | Back alignment and domain information |
|---|
Probab=89.48 E-value=0.34 Score=25.18 Aligned_cols=22 Identities=45% Similarity=0.658 Sum_probs=14.0
Q ss_pred ccCcEEecccccCCCCCchhhhc
Q 036411 277 KELITLDLSRNNFSGELPRSIFS 299 (487)
Q Consensus 277 ~~L~~L~l~~~~~~~~~~~~~~~ 299 (487)
++|+.|++++|.+. .+|...|.
T Consensus 2 ~~L~~L~L~~N~l~-~lp~~~f~ 23 (26)
T smart00369 2 PNLRELDLSNNQLS-SLPPGAFQ 23 (26)
T ss_pred CCCCEEECCCCcCC-cCCHHHcc
Confidence 45666777777666 66666553
|
|
| >smart00370 LRR Leucine-rich repeats, outliers | Back alignment and domain information |
|---|
Probab=89.48 E-value=0.34 Score=25.18 Aligned_cols=22 Identities=45% Similarity=0.658 Sum_probs=14.0
Q ss_pred ccCcEEecccccCCCCCchhhhc
Q 036411 277 KELITLDLSRNNFSGELPRSIFS 299 (487)
Q Consensus 277 ~~L~~L~l~~~~~~~~~~~~~~~ 299 (487)
++|+.|++++|.+. .+|...|.
T Consensus 2 ~~L~~L~L~~N~l~-~lp~~~f~ 23 (26)
T smart00370 2 PNLRELDLSNNQLS-SLPPGAFQ 23 (26)
T ss_pred CCCCEEECCCCcCC-cCCHHHcc
Confidence 45666777777666 66666553
|
|
| >smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily | Back alignment and domain information |
|---|
Probab=87.91 E-value=0.46 Score=24.69 Aligned_cols=15 Identities=27% Similarity=0.558 Sum_probs=7.0
Q ss_pred cceEEEeeCcccCCc
Q 036411 422 SVKHIYLHNNAINGL 436 (487)
Q Consensus 422 ~L~~L~l~~~~~~~~ 436 (487)
+|+.|++.+|.+..+
T Consensus 3 ~L~~L~L~~N~l~~l 17 (26)
T smart00369 3 NLRELDLSNNQLSSL 17 (26)
T ss_pred CCCEEECCCCcCCcC
Confidence 444444444444443
|
|
| >smart00370 LRR Leucine-rich repeats, outliers | Back alignment and domain information |
|---|
Probab=87.91 E-value=0.46 Score=24.69 Aligned_cols=15 Identities=27% Similarity=0.558 Sum_probs=7.0
Q ss_pred cceEEEeeCcccCCc
Q 036411 422 SVKHIYLHNNAINGL 436 (487)
Q Consensus 422 ~L~~L~l~~~~~~~~ 436 (487)
+|+.|++.+|.+..+
T Consensus 3 ~L~~L~L~~N~l~~l 17 (26)
T smart00370 3 NLRELDLSNNQLSSL 17 (26)
T ss_pred CCCEEECCCCcCCcC
Confidence 444444444444443
|
|
| >smart00364 LRR_BAC Leucine-rich repeats, bacterial type | Back alignment and domain information |
|---|
Probab=85.15 E-value=0.61 Score=24.23 Aligned_cols=13 Identities=31% Similarity=0.324 Sum_probs=5.9
Q ss_pred ceeEEeccCCccC
Q 036411 470 NLHFLLLRGNSLQ 482 (487)
Q Consensus 470 ~L~~L~l~~~~~~ 482 (487)
+|+.|++++|+++
T Consensus 3 ~L~~L~vs~N~Lt 15 (26)
T smart00364 3 SLKELNVSNNQLT 15 (26)
T ss_pred ccceeecCCCccc
Confidence 3444444444433
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 487 | ||||
| 3rgx_A | 768 | Structural Insight Into Brassinosteroid Perception | 4e-31 | ||
| 3riz_A | 772 | Crystal Structure Of The Plant Steroid Receptor Bri | 4e-31 | ||
| 1ogq_A | 313 | The Crystal Structure Of Pgip (Polygalacturonase In | 1e-09 | ||
| 3rg1_A | 612 | Crystal Structure Of The Rp105MD-1 Complex Length = | 3e-06 | ||
| 3fxi_A | 605 | Crystal Structure Of The Human Tlr4-Human Md-2-E.Co | 3e-05 | ||
| 4g8a_A | 635 | Crystal Structure Of Human Tlr4 Polymorphic Variant | 8e-05 | ||
| 3t6q_A | 606 | Crystal Structure Of Mouse Rp105MD-1 Complex Length | 4e-04 |
| >pdb|3RGX|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1 Length = 768 | Back alignment and structure |
|
| >pdb|3RIZ|A Chain A, Crystal Structure Of The Plant Steroid Receptor Bri1 Ectodomain Length = 772 | Back alignment and structure |
|
| >pdb|1OGQ|A Chain A, The Crystal Structure Of Pgip (Polygalacturonase Inhibiting Protein), A Leucine Rich Repeat Protein Involved In Plant Defense Length = 313 | Back alignment and structure |
|
| >pdb|3RG1|A Chain A, Crystal Structure Of The Rp105MD-1 Complex Length = 612 | Back alignment and structure |
|
| >pdb|3FXI|A Chain A, Crystal Structure Of The Human Tlr4-Human Md-2-E.Coli Lps Ra Complex Length = 605 | Back alignment and structure |
|
| >pdb|4G8A|A Chain A, Crystal Structure Of Human Tlr4 Polymorphic Variant D299g And T399i In Complex With Md-2 And Lps Length = 635 | Back alignment and structure |
|
| >pdb|3T6Q|A Chain A, Crystal Structure Of Mouse Rp105MD-1 Complex Length = 606 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768 | Back alignment and structure |
|---|
Score = 316 bits (811), Expect = e-100
Identities = 156/492 (31%), Positives = 233/492 (47%), Gaps = 18/492 (3%)
Query: 5 GSLKQLKILNLGFNFFIDSILPYLNTLTSLTTLNLRYNKIEGSRTKQGICNLKNLLELDL 64
+ + + + N ++ L +LT L +L L + I GS + G +L LDL
Sbjct: 50 DKVTSIDLSSKPLNVGFSAVSSSLLSLTGLESLFLSNSHINGSVS--GFKCSASLTSLDL 107
Query: 65 SSNNFEGHLP--QCLNNLTHLKVLDISYNQLSGNFP-SVLTNLTSLEYLDLSFIDFQGTF 121
S N+ G + L + + LK L++S N L S L SLE LDLS G
Sbjct: 108 SRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISGAN 167
Query: 122 L--INSLANHSKLEVLVLSSGNDMLQVKTENWLPTYPLKVLQLSHCHLNVNSSFLLHQHH 179
+ +L+ L + SGN + + L+ L +S + + FL
Sbjct: 168 VVGWVLSDGCGELKHLAI-SGNKISGDVDVSRCVN--LEFLDVSSNNFSTGIPFLGDCSA 224
Query: 180 LKFLDLSHNQLVGNFPTWLLQNNTGLEVLILWNNSFSGILPRLPNAKYDKLRHLDISTNN 239
L+ LD+S N+L G+F + T L++L + +N F G +P LP L++L ++ N
Sbjct: 225 LQHLDISGNKLSGDFSRA-ISTCTELKLLNISSNQFVGPIPPLPLK---SLQYLSLAENK 280
Query: 240 FSGKLPENLGIVFQKLIYLDVSKNSFEGNIPYSISEMKELITLDLSRNNFSGELPRSIFS 299
F+G++P+ L L LD+S N F G +P L +L LS NNFSGELP
Sbjct: 281 FTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLL 340
Query: 300 SCLSLETLDLSNNNFYGQLFPNFMNLT-HLSSLRLNNNHFSGKMADGLLSSTL--LDVLD 356
L+ LDLS N F G+L + NL+ L +L L++N+FSG + L + L L
Sbjct: 341 KMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELY 400
Query: 357 VSNNKLSGDIPHWIGNFSVLWLLLMSENYLQGSIPVQLGNLESLEFIDISENGLSVSM-V 415
+ NN +G IP + N S L L +S NYL G+IP LG+L L + + N L +
Sbjct: 401 LQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQ 460
Query: 416 SLSNLSSVKHIYLHNNAINGLIPIALLRSSTLLTLDLRDNKFFGRIPHQINELSNLHFLL 475
L + +++ + L N + G IP L + L + L +N+ G IP I L NL L
Sbjct: 461 ELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILK 520
Query: 476 LRGNSLQGRIPN 487
L NS G IP
Sbjct: 521 LSNNSFSGNIPA 532
|
| >3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768 | Back alignment and structure |
|---|
Score = 310 bits (796), Expect = 9e-98
Identities = 151/512 (29%), Positives = 222/512 (43%), Gaps = 36/512 (7%)
Query: 3 SFGSLKQLKILNLGFNFFIDSI---LPYLNTLTSLTTLNLRYNKIEGSRTKQGICNLKNL 59
L L++L+L N + + L L + NKI G + NL
Sbjct: 146 GGLKLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGD---VDVSRCVNL 202
Query: 60 LELDLSSNNFEGHLPQCLNNLTHLKVLDISYNQLSGNFPSVLTNLTSLEYLDLSFIDFQG 119
LD+SSNNF +P L + + L+ LDIS N+LSG+F ++ T L+ L++S F G
Sbjct: 203 EFLDVSSNNFSTGIPF-LGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVG 261
Query: 120 TFLINSLANHSKLEVLVLSSGNDMLQVKTENWLPTYPLKVLQLSHCHLNVN-SSFLLHQH 178
L+ L L+ ++ L L LS H F
Sbjct: 262 PI---PPLPLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCS 318
Query: 179 HLKFLDLSHNQLVGNFPTWLLQNNTGLEVLILWNNSFSGILPRLPNAKYDKLRHLDISTN 238
L+ L LS N G P L GL+VL L N FSG LP L LD+S+N
Sbjct: 319 LLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSN 378
Query: 239 NFSGKLPENLG-IVFQKLIYLDVSKNSFEGNIPYSISEMKELITLDLSRNNFSGELPRSI 297
NFSG + NL L L + N F G IP ++S EL++L LS N SG +P S+
Sbjct: 379 NFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSL 438
Query: 298 FSSCLSLETLDLSNNNFYGQLFPNFMNLTHLSSLRLNNNHFSGKMADGLLSSTLLDVLDV 357
S L L L N G++ M + L +L L+ N +G++ GL + T L+ + +
Sbjct: 439 -GSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISL 497
Query: 358 SNNKLSGDIPHWIGNFSVLWLLLMSENYLQGSIPVQLGNLESLEFIDISENGLS------ 411
SNN+L+G+IP WIG L +L +S N G+IP +LG+ SL ++D++ N +
Sbjct: 498 SNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAA 557
Query: 412 ---------------VSMVSLSNLSSVKHIYLHNNAIN--GLIPIALLRSSTLLTLDLRD 454
V + N K + N + G+ L R ST ++
Sbjct: 558 MFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITS 617
Query: 455 NKFFGRIPHQINELSNLHFLLLRGNSLQGRIP 486
+ G + ++ FL + N L G IP
Sbjct: 618 RVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIP 649
|
| >3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768 | Back alignment and structure |
|---|
Score = 293 bits (752), Expect = 3e-91
Identities = 138/492 (28%), Positives = 206/492 (41%), Gaps = 44/492 (8%)
Query: 3 SFGSLKQLKILNLGFNFFIDSILPYLNTLTSLTTLNLRYNKIEGSRTKQGICNLKNLLEL 62
G L+ L++ N ++T T L LN+ N+ G LK+L L
Sbjct: 218 FLGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPP---LPLKSLQYL 274
Query: 63 DLSSNNFEGHLPQCL-NNLTHLKVLDISYNQLSGNFPSVLTNLTSLEYLDLSFIDFQGTF 121
L+ N F G +P L L LD+S N G P + + LE L LS +F G
Sbjct: 275 SLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGEL 334
Query: 122 LINSLANHSKLEVLVLSSGNDMLQVKTENWLPTYPLKVLQLSHCHLN--VNSSFLLHQHH 179
+++L L+VL LS + + S
Sbjct: 335 PMDTLLKMRGLKVL-------------------------DLSFNEFSGELPESLTNLSAS 369
Query: 180 LKFLDLSHNQLVGNFPTWLLQNN-TGLEVLILWNNSFSGILPR-LPNAKYDKLRHLDIST 237
L LDLS N G L QN L+ L L NN F+G +P L N +L L +S
Sbjct: 370 LLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCS--ELVSLHLSF 427
Query: 238 NNFSGKLPENLGIVFQKLIYLDVSKNSFEGNIPYSISEMKELITLDLSRNNFSGELPRSI 297
N SG +P +LG KL L + N EG IP + +K L TL L N+ +GE+P +
Sbjct: 428 NYLSGTIPSSLGS-LSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGL 486
Query: 298 FSSCLSLETLDLSNNNFYGQLFPNFMNLTHLSSLRLNNNHFSGKMADGLLSSTLLDVLDV 357
S+C +L + LSNN G++ L +L+ L+L+NN FSG + L L LD+
Sbjct: 487 -SNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDL 545
Query: 358 SNNKLSGDIPHWIGNFSVLWLLLMSENYLQGSIPVQLGNLESLEFIDISENGLSVSMV-- 415
+ N +G IP + S ++ N++ G V + N + + N L +
Sbjct: 546 NTNLFNGTIPAAMFKQS----GKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRS 601
Query: 416 -SLSNLSSVKHIYLHNNAINGLIPIALLRSSTLLTLDLRDNKFFGRIPHQINELSNLHFL 474
L+ LS+ + + G + +++ LD+ N G IP +I + L L
Sbjct: 602 EQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFIL 661
Query: 475 LLRGNSLQGRIP 486
L N + G IP
Sbjct: 662 NLGHNDISGSIP 673
|
| >3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768 | Back alignment and structure |
|---|
Score = 288 bits (740), Expect = 1e-89
Identities = 142/495 (28%), Positives = 221/495 (44%), Gaps = 51/495 (10%)
Query: 3 SFGSLKQLKILNLGFNFFIDSI-LPYLNTLTSLTTLNLRYNKIEGS--RTKQGICNLKNL 59
S GS LK LN+ N + L SL L+L N I G+ L
Sbjct: 121 SLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISGANVVGWVLSDGCGEL 180
Query: 60 LELDLSSNNFEGHLPQCLNNLTHLKVLDISYNQLSGNFPSVLTNLTSLEYLDLSFIDFQG 119
L +S N G + ++ +L+ LD+S N S P L + ++L++LD+S G
Sbjct: 181 KHLAISGNKISGDVD--VSRCVNLEFLDVSSNNFSTGIPF-LGDCSALQHLDISGNKLSG 237
Query: 120 TFLINSLANHSKLEVLVLSSGNDMLQVKTENWLPTYPLKVLQLSHCHLNVN-SSFLLHQH 178
F +++ ++L++L +S L
Sbjct: 238 DFS-RAISTCTELKLL-------------------------NISSNQFVGPIPPLPLKS- 270
Query: 179 HLKFLDLSHNQLVGNFPTWLLQNNTGLEVLILWNNSFSGILPR----LPNAKYDKLRHLD 234
L++L L+ N+ G P +L L L L N F G +P L L
Sbjct: 271 -LQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSL-----LESLA 324
Query: 235 ISTNNFSGKLPENLGIVFQKLIYLDVSKNSFEGNIPYSISEMK-ELITLDLSRNNFSGEL 293
+S+NNFSG+LP + + + L LD+S N F G +P S++ + L+TLDLS NNFSG +
Sbjct: 325 LSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPI 384
Query: 294 PRSIFSSCL-SLETLDLSNNNFYGQLFPNFMNLTHLSSLRLNNNHFSGKMADGLLSSTLL 352
++ + +L+ L L NN F G++ P N + L SL L+ N+ SG + L S + L
Sbjct: 385 LPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKL 444
Query: 353 DVLDVSNNKLSGDIPHWIGNFSVLWLLLMSENYLQGSIPVQLGNLESLEFIDISENGLSV 412
L + N L G+IP + L L++ N L G IP L N +L +I +S N L+
Sbjct: 445 RDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTG 504
Query: 413 SM-VSLSNLSSVKHIYLHNNAINGLIPIALLRSSTLLTLDLRDNKFFGRIPHQINELSNL 471
+ + L ++ + L NN+ +G IP L +L+ LDL N F G IP + + S
Sbjct: 505 EIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQS-- 562
Query: 472 HFLLLRGNSLQGRIP 486
+ N + G+
Sbjct: 563 --GKIAANFIAGKRY 575
|
| >3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768 | Back alignment and structure |
|---|
Score = 276 bits (707), Expect = 8e-85
Identities = 142/493 (28%), Positives = 212/493 (43%), Gaps = 18/493 (3%)
Query: 2 DSFGSLKQLKILNLGFNFFIDSILPYLNTLTSLTTLNLRYNKIEGSRTKQGICNLKNLLE 61
+ + +LK+LN+ N F+ I P L L SL L+L NK G L
Sbjct: 241 RAISTCTELKLLNISSNQFVGPI-PPLP-LKSLQYLSLAENKFTGEIPDFLSGACDTLTG 298
Query: 62 LDLSSNNFEGHLPQCLNNLTHLKVLDISYNQLSGNFP-SVLTNLTSLEYLDLSFIDFQGT 120
LDLS N+F G +P + + L+ L +S N SG P L + L+ LDLSF +F G
Sbjct: 299 LDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGE 358
Query: 121 FLINSLANHSKLEVLVLSSGNDMLQVKTENW-LPTYPLKVLQLSHCHLNVN-SSFLLHQH 178
+ + L L LSS N + P L+ L L + L +
Sbjct: 359 LPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCS 418
Query: 179 HLKFLDLSHNQLVGNFPTWLLQNNTGLEVLILWNNSFSGILPR-LPNAKYDKLRHLDIST 237
L L LS N L G P+ L + + L L LW N G +P+ L K L L +
Sbjct: 419 ELVSLHLSFNYLSGTIPSSLG-SLSKLRDLKLWLNMLEGEIPQELMYVK--TLETLILDF 475
Query: 238 NNFSGKLPENLGIVFQKLIYLDVSKNSFEGNIPYSISEMKELITLDLSRNNFSGELPRSI 297
N+ +G++P L L ++ +S N G IP I ++ L L LS N+FSG +P +
Sbjct: 476 NDLTGEIPSGLSN-CTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAEL 534
Query: 298 FSSCLSLETLDLSNNNFYGQLFPNFMNLTHLSSLRLNNNHFSGKMADGLLSSTLLDVLDV 357
C SL LDL+ N F G + S ++ N +GK + + +
Sbjct: 535 -GDCRSLIWLDLNTNLFNGTIPAAMFKQ----SGKIAANFIAGKRYVYIKNDGMKKECHG 589
Query: 358 SNN--KLSGDIPHWIGNFSVLWLLLMSENYLQGSIPVQLGNLESLEFIDISENGLSVSM- 414
+ N + G + S ++ G N S+ F+D+S N LS +
Sbjct: 590 AGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIP 649
Query: 415 VSLSNLSSVKHIYLHNNAINGLIPIALLRSSTLLTLDLRDNKFFGRIPHQINELSNLHFL 474
+ ++ + + L +N I+G IP + L LDL NK GRIP ++ L+ L +
Sbjct: 650 KEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEI 709
Query: 475 LLRGNSLQGRIPN 487
L N+L G IP
Sbjct: 710 DLSNNNLSGPIPE 722
|
| >3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768 | Back alignment and structure |
|---|
Score = 274 bits (704), Expect = 2e-84
Identities = 145/447 (32%), Positives = 216/447 (48%), Gaps = 22/447 (4%)
Query: 54 CNLKNLLELDLSSNNFE---GHLPQCLNNLTHLKVLDISYNQLSGNFPSVLTNLTSLEYL 110
C + +DLSS + L +LT L+ L +S + ++G+ SL L
Sbjct: 47 CRDDKVTSIDLSSKPLNVGFSAVSSSLLSLTGLESLFLSNSHINGSVSG-FKCSASLTSL 105
Query: 111 DLSFIDFQGTF-LINSLANHSKLEVLVLSSGNDMLQVKTENWLPTYPLKVLQLSHCHLN- 168
DLS G + SL + S L+ L +SS K L L+VL LS ++
Sbjct: 106 DLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISG 165
Query: 169 ---VNSSFLLHQHHLKFLDLSHNQLVGNFPTWLLQNNTGLEVLILWNNSFSGILPRLPNA 225
V LK L +S N++ G+ N LE L + +N+FS +P L +
Sbjct: 166 ANVVGWVLSDGCGELKHLAISGNKISGDVDVSRCVN---LEFLDVSSNNFSTGIPFLGDC 222
Query: 226 KYDKLRHLDISTNNFSGKLPENLGIVFQKLIYLDVSKNSFEGNIPYSISEMKELITLDLS 285
L+HLDIS N SG + +L L++S N F G IP +K L L L+
Sbjct: 223 S--ALQHLDISGNKLSGDFSRAIST-CTELKLLNISSNQFVGPIPPLP--LKSLQYLSLA 277
Query: 286 RNNFSGELPRSIFSSCLSLETLDLSNNNFYGQLFPNFMNLTHLSSLRLNNNHFSGKM-AD 344
N F+GE+P + +C +L LDLS N+FYG + P F + + L SL L++N+FSG++ D
Sbjct: 278 ENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMD 337
Query: 345 GLLSSTLLDVLDVSNNKLSGDIPHWIGNFSV-LWLLLMSENYLQGSIPVQLGN--LESLE 401
LL L VLD+S N+ SG++P + N S L L +S N G I L +L+
Sbjct: 338 TLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQ 397
Query: 402 FIDISENGLSVSM-VSLSNLSSVKHIYLHNNAINGLIPIALLRSSTLLTLDLRDNKFFGR 460
+ + NG + + +LSN S + ++L N ++G IP +L S L L L N G
Sbjct: 398 ELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGE 457
Query: 461 IPHQINELSNLHFLLLRGNSLQGRIPN 487
IP ++ + L L+L N L G IP+
Sbjct: 458 IPQELMYVKTLETLILDFNDLTGEIPS 484
|
| >3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768 | Back alignment and structure |
|---|
Score = 244 bits (626), Expect = 5e-73
Identities = 136/506 (26%), Positives = 208/506 (41%), Gaps = 86/506 (16%)
Query: 4 FGSLKQLKILNLGFNFFIDSILPYLNTLTSLTTLNLRYNKIEGSRTKQGICNLKNLLELD 63
G+ L L+L N F ++ P+ + + L +L L N G + ++ L LD
Sbjct: 290 SGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLD 349
Query: 64 LSSNNFEGHLPQCLNNLT-HLKVLDISYNQLSGNFPSVLTN--LTSLEYLDLSFIDFQGT 120
LS N F G LP+ L NL+ L LD+S N SG L +L+ L L F G
Sbjct: 350 LSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGK 409
Query: 121 FLINSLANHSKLEVLVLS----SGNDMLQVKTENWLPTYPLKVLQLSHCHLNVNSSFLLH 176
+ +L+N S+L L LS SG +P S L
Sbjct: 410 -IPPTLSNCSELVSLHLSFNYLSGT----------IP------------------SSLGS 440
Query: 177 QHHLKFLDLSHNQLVGNFPTWLLQNNTGLEVLILWNNSFSGILPR-LPNAKYDKLRHLDI 235
L+ L L N L G P L+ LE LIL N +G +P L N L + +
Sbjct: 441 LSKLRDLKLWLNMLEGEIPQELM-YVKTLETLILDFNDLTGEIPSGLSNCT--NLNWISL 497
Query: 236 STNNFSGKLPENLGIVFQKLIYLDVSKNSFEGNIPYSISEMKELITLDLSRNNFSGELPR 295
S N +G++P+ +G + L L +S NSF GNIP + + + LI LDL+ N F+G +P
Sbjct: 498 SNNRLTGEIPKWIG-RLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPA 556
Query: 296 SIF-------------------SSCLSLETLDLSNN--NFYGQLFPNFMNLTHLSSLRLN 334
++F + + + N F G L+ + +
Sbjct: 557 AMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNIT 616
Query: 335 NNHFSGKMADGLLSSTLLDVLDVSNNKLSGDIPHWIGNFSVLWLLLMSENYLQGSIPVQL 394
+ + G + ++ + LD+S N LSG IP IG+ L++L + N + GSIP ++
Sbjct: 617 SRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEV 676
Query: 395 GNLESLEFIDISENGLSVSMVSLSNLSSVKHIYLHNNAINGLIPIALLRSSTLLTLDLRD 454
G+L L +D+S N L G IP A+ + L +DL +
Sbjct: 677 GDLRGLNILDLSSNKLD-----------------------GRIPQAMSALTMLTEIDLSN 713
Query: 455 NKFFGRIPHQINELSNLHFLLLRGNS 480
N G IP ++ + N
Sbjct: 714 NNLSGPIP-EMGQFETFPPAKFLNNP 738
|
| >3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768 | Back alignment and structure |
|---|
Score = 92.3 bits (230), Expect = 5e-20
Identities = 32/119 (26%), Positives = 55/119 (46%), Gaps = 1/119 (0%)
Query: 1 YDSFGSLKQLKILNLGFNFFIDSILPYLNTLTSLTTLNLRYNKIEGSRTKQGICNLKNLL 60
+ L N+ + P + S+ L++ YN + G K+ I ++ L
Sbjct: 601 SEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKE-IGSMPYLF 659
Query: 61 ELDLSSNNFEGHLPQCLNNLTHLKVLDISYNQLSGNFPSVLTNLTSLEYLDLSFIDFQG 119
L+L N+ G +P + +L L +LD+S N+L G P ++ LT L +DLS + G
Sbjct: 660 ILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSG 718
|
| >1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680 | Back alignment and structure |
|---|
Score = 208 bits (532), Expect = 3e-60
Identities = 105/499 (21%), Positives = 187/499 (37%), Gaps = 24/499 (4%)
Query: 5 GSLKQLKILNLGFNFFIDSILPYLNTLTSLTTLNLRYNKIEGSRTKQGICNLKNLLELDL 64
+ +LNL N + LT+L++ +N I + L L L+L
Sbjct: 22 DLPTNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKL-EPELCQKLPMLKVLNL 80
Query: 65 SSNNFEGHLPQCLNNLTHLKVLDISYNQLSGNFPSVLTNLTSLEYLDLSFIDFQGTFLIN 124
N + T+L L + N + + +L LDLS T L
Sbjct: 81 QHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKL-G 139
Query: 125 SLANHSKLEVLVLSSGN-DMLQVKTENWLPTYPLKVLQLSHCHL-NVNSSFLLHQHHLKF 182
+ L+ L+LS+ L+ + + LK L+LS + + L
Sbjct: 140 TQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFG 199
Query: 183 LDLSHNQLVGNFPTWLLQ--NNTGLEVLILWNNSFSGILPR-LPNAKYDKLRHLDISTNN 239
L L++ QL + L NT + L L N+ S K+ L LD+S NN
Sbjct: 200 LFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNN 259
Query: 240 FSGKLPENLGIVFQKLIYLDVSKNSFEGNIPYSISEMKELITLDLSRNNFSG-------- 291
+ ++ +L Y + N+ + +S+ + + L+L R+
Sbjct: 260 LNVVGNDSFA-WLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLP 318
Query: 292 ELPRSIFSSCLSLETLDLSNNNFYGQLFPNFMNLTHLSSLRLNNNHFSGKMADGL----L 347
++ F LE L++ +N+ G F L +L L L+N+ S + L
Sbjct: 319 KIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSL 378
Query: 348 SSTLLDVLDVSNNKLSGDIPHWIGNFSVLWLLLMSENYLQGSIPVQ-LGNLESLEFIDIS 406
+ + L +L+++ NK+S L +L + N + + Q LE++ I +S
Sbjct: 379 AHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLS 438
Query: 407 ENGLS-VSMVSLSNLSSVKHIYLHNNAINGL--IPIALLRSSTLLTLDLRDNKFFGRIPH 463
N ++ S + + S++ + L A+ + P L LDL +N
Sbjct: 439 YNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDD 498
Query: 464 QINELSNLHFLLLRGNSLQ 482
+ L L L L+ N+L
Sbjct: 499 MLEGLEKLEILDLQHNNLA 517
|
| >1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680 | Back alignment and structure |
|---|
Score = 184 bits (468), Expect = 2e-51
Identities = 98/483 (20%), Positives = 170/483 (35%), Gaps = 41/483 (8%)
Query: 3 SFGSLKQLKILNLGFNFFIDSILPYLNTLTSLTTLNLRYNKIEGSRTK--QGICNLKNLL 60
+ LK L L N + + + L L L ++ S T+ ++
Sbjct: 166 DIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIR 225
Query: 61 ELDLSSNNFEGHLPQCLNNL--THLKVLDISYNQLSGNFPSVLTNLTSLEYLDLSFIDFQ 118
L LS++ L T+L +LD+SYN L+ L LEY L + + Q
Sbjct: 226 NLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQ 285
Query: 119 GTFLINSLANHSKLEVLVLSSGNDMLQVKTENWLPTYPLKVLQLSHCHL-NVNSSFLLHQ 177
+SL + L L +S L ++
Sbjct: 286 H-LFSHSLHGLFNVRYLNLKRS----------------FTKQSISLASLPKIDDFSFQWL 328
Query: 178 HHLKFLDLSHNQLVGNFPTWLLQNNTGLEVLILWNNSFSGILPR---LPNAKYDKLRHLD 234
L+ L++ N + G + + L+ L L N+ S + + L L+
Sbjct: 329 KCLEHLNMEDNDIPG-IKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILN 387
Query: 235 ISTNNFSGKLPENLGIVFQKLIYLDVSKNSFEGNIPYS-ISEMKELITLDLSRNNFSGEL 293
++ N S + L LD+ N + ++ + + LS N + L
Sbjct: 388 LTKNKISKIESDAFS-WLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQ-L 445
Query: 294 PRSIFSSCLSLETLDLSNNNFYG--QLFPNFMNLTHLSSLRLNNNHFSGKMADGLLSSTL 351
R+ F+ SL+ L L F L +L+ L L+NN+ + D L
Sbjct: 446 TRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEK 505
Query: 352 LDVLDVSNNKLS--------GDIPHWIGNFSVLWLLLMSENYLQGSIPVQLGNLESLEFI 403
L++LD+ +N L+ G +++ S L +L + N +L L+ I
Sbjct: 506 LEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKII 565
Query: 404 DISENGLS-VSMVSLSNLSSVKHIYLHNNAINGLIPIALLRS-STLLTLDLRDNKFFGRI 461
D+ N L+ + +N S+K + L N I + + L LD+R N F
Sbjct: 566 DLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTELDMRFNPFDCTC 625
Query: 462 PHQ 464
Sbjct: 626 ESI 628
|
| >1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680 | Back alignment and structure |
|---|
Score = 157 bits (399), Expect = 9e-42
Identities = 86/425 (20%), Positives = 154/425 (36%), Gaps = 27/425 (6%)
Query: 83 LKVLDISYNQLSGNFPSVLTNLTSLEYLDLSFIDFQGTFLINSLANHSKLEVLVLSSGND 142
+V D S+ +L+ P L T++ L+L+ + + +S+L L + N
Sbjct: 6 HEVADCSHLKLT-QVPDDL--PTNITVLNLTHNQLRR-LPAANFTRYSQLTSLDV-GFNT 60
Query: 143 MLQVKTENWLPTYPLKVLQLSHCHLNVNSSFLLHQ-HHLKFLDLSHNQLVGNFPTWLLQN 201
+ +++ E LKVL L H L+ S +L L L N +
Sbjct: 61 ISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQK-IKNNPFVK 119
Query: 202 NTGLEVLILWNNSFSGILPRLPNAKYDKLRHLDISTNNFSGKLPENLGIVFQ-KLIYLDV 260
L L L +N S + + L+ L +S N E L I L L++
Sbjct: 120 QKNLITLDLSHNGLSSTKLGTQ-VQLENLQELLLSNNKIQALKSEELDIFANSSLKKLEL 178
Query: 261 SKNSFEGNIPYSISEMKELITLDLSRNNFSGELPRSIFS--SCLSLETLDLSNNNFYGQL 318
S N + P + L L L+ L + + S+ L LSN+
Sbjct: 179 SSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTS 238
Query: 319 FPNFMNL--THLSSLRLNNNHFSGKMADGLLSSTLLDVLDVSNNKLSGDIPHWIGNFSVL 376
F+ L T+L+ L L+ N+ + D L+ + N + H + +
Sbjct: 239 NTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNV 298
Query: 377 WLLLMSENYLQGSI---------PVQLGNLESLEFIDISENGLS-VSMVSLSNLSSVKHI 426
L + ++ + SI L+ LE +++ +N + + + L ++K++
Sbjct: 299 RYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYL 358
Query: 427 YLHNNAINGLIPIAL----LRSSTLLTLDLRDNKFFGRIPHQINELSNLHFLLLRGNSLQ 482
L N+ + L S L L+L NK + L +L L L N +
Sbjct: 359 SLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIG 418
Query: 483 GRIPN 487
+
Sbjct: 419 QELTG 423
|
| >1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680 | Back alignment and structure |
|---|
Score = 110 bits (277), Expect = 6e-26
Identities = 47/213 (22%), Positives = 86/213 (40%), Gaps = 7/213 (3%)
Query: 278 ELITLDLSRNNFSGELPRSIFSSCLSLETLDLSNNNFYGQLFPNFMNLTHLSSLRLNNNH 337
D S + ++P + ++ + L+L++N NF + L+SL + N
Sbjct: 5 SHEVADCSHLKLT-QVPDDLPTN---ITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNT 60
Query: 338 FSGKMADGLLSSTLLDVLDVSNNKLSGDIPHWIGNFSVLWLLLMSENYLQGSIPVQLGNL 397
S + +L VL++ +N+LS + L L + N +Q
Sbjct: 61 ISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQ 120
Query: 398 ESLEFIDISENGLS-VSMVSLSNLSSVKHIYLHNNAINGLIPIAL--LRSSTLLTLDLRD 454
++L +D+S NGLS + + L +++ + L NN I L L +S+L L+L
Sbjct: 121 KNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSS 180
Query: 455 NKFFGRIPHQINELSNLHFLLLRGNSLQGRIPN 487
N+ P + + L L L L +
Sbjct: 181 NQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTE 213
|
| >1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680 | Back alignment and structure |
|---|
Score = 55.0 bits (133), Expect = 4e-08
Identities = 25/139 (17%), Positives = 46/139 (33%), Gaps = 2/139 (1%)
Query: 1 YDSFGSLKQLKILNLGFNFFIDSILPYLNTLTSLTTLNLRYNKIEGSRTKQGICNLKNLL 60
L L ILNL N F + + L L ++L N + N +L
Sbjct: 529 IYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLP-ASVFNNQVSLK 587
Query: 61 ELDLSSNNFEGHLPQCL-NNLTHLKVLDISYNQLSGNFPSVLTNLTSLEYLDLSFIDFQG 119
L+L N + +L LD+ +N S+ + + + +
Sbjct: 588 SLNLQKNLITSVEKKVFGPAFRNLTELDMRFNPFDCTCESIAWFVNWINETHTNIPELSS 647
Query: 120 TFLINSLANHSKLEVLVLS 138
+L N+ ++ V +
Sbjct: 648 HYLCNTPPHYHGFPVRLFD 666
|
| >3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605 | Back alignment and structure |
|---|
Score = 200 bits (510), Expect = 1e-57
Identities = 111/503 (22%), Positives = 184/503 (36%), Gaps = 28/503 (5%)
Query: 2 DSFGSLKQLKILNLGFNFFIDSILPYLNTLTSLTTLNLRYNKIEGSRTKQGICNLKNLLE 61
++ SL L L L N L + L+SL L + I +LK L E
Sbjct: 70 GAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLEN-FPIGHLKTLKE 128
Query: 62 LDLSSNNFEG-HLPQCLNNLTHLKVLDISYNQLSGNFPSVLTNLTSLEY--LDLSFIDFQ 118
L+++ N + LP+ +NLT+L+ LD+S N++ + + L L + L L
Sbjct: 129 LNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNP 188
Query: 119 GTFLINSLANHSKLEVLVLSSGNDMLQVKTENWLPTYPLKVLQLSHCHLNVNSSFL---- 174
F+ +L L L + D L V L+V +L +
Sbjct: 189 MNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDK 248
Query: 175 -----LHQHHLKFLDLSHNQLVGNFPTWLLQNNTGLEVLILWNNSFSGILPRLPNAKYDK 229
L ++ L++ + L T + L + + + N
Sbjct: 249 SALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFSYNF---G 305
Query: 230 LRHLDISTNNFSGKLPENLGIVFQKLIYLDVSKNSFEGNIPYSISEMKELITLDLSRNNF 289
+HL++ F L L L + N G +S ++ L LDLSRN
Sbjct: 306 WQHLELVNCKFGQFPTLKLK----SLKRLTFTSNK--GGNAFSEVDLPSLEFLDLSRNGL 359
Query: 290 SG-ELPRSIFSSCLSLETLDLSNNNFYGQLFPNFMNLTHLSSLRLNNNHFSGKMADGLLS 348
S SL+ LDLS N + NF+ L L L +++ +
Sbjct: 360 SFKGCCSQSDFGTTSLKYLDLSFNGVIT-MSSNFLGLEQLEHLDFQHSNLKQMSEFSVFL 418
Query: 349 S-TLLDVLDVSNNKLSGDIPHWIGNFSVLWLLLMSENYLQGSI-PVQLGNLESLEFIDIS 406
S L LD+S+ S L +L M+ N Q + P L +L F+D+S
Sbjct: 419 SLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLS 478
Query: 407 ENGLS-VSMVSLSNLSSVKHIYLHNNAINGLIPIALLRSSTLLTLDLRDNKFFGRIPHQI 465
+ L +S + ++LSS++ + + +N L ++L LD N ++
Sbjct: 479 QCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQEL 538
Query: 466 NEL-SNLHFLLLRGNSLQGRIPN 487
S+L FL L N +
Sbjct: 539 QHFPSSLAFLNLTQNDFACTCEH 561
|
| >3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605 | Back alignment and structure |
|---|
Score = 199 bits (507), Expect = 3e-57
Identities = 97/512 (18%), Positives = 166/512 (32%), Gaps = 39/512 (7%)
Query: 10 LKILNLGFNFFIDSILPYLNTLTSLTTLNLRYNKIEGSRTKQGICNLKNLLELDLSSNNF 69
K L+L FN + L L+L +I+ +L +L L L+ N
Sbjct: 30 TKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIE-DGAYQSLSHLSTLILTGNPI 88
Query: 70 EGHLPQCLNNLTHLKVLDISYNQLSGNFPSVLTNLTSLEYLDLSFIDFQGTFLINSLANH 129
+ + L+ L+ L L+ + +L +L+ L+++ Q L +N
Sbjct: 89 QSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNL 148
Query: 130 SKLEVLVLSSGNDMLQVKTENWLP----TYPLKVLQLSHCHLNVNSSFLLHQHHLKFLDL 185
+ LE L L S N + + + L LS +N + L L L
Sbjct: 149 TNLEHLDL-SSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLTL 207
Query: 186 SHNQLVGNFPTWLLQNNTGLEVLILWNNSFSG-------ILPRLPNAKYDKLRHLDISTN 238
+N N +Q GLEV L F L + ++
Sbjct: 208 RNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYL 267
Query: 239 NFSGKLPENLGIVFQKLIYLDVSKNSFEGNIPYSISEMKELITLDLSRNNFSGELPRSI- 297
++ +L + + + E S L+L F +
Sbjct: 268 DYYLDDIIDLFNCLTNVSSFSLVSVTIERVKD--FSYNFGWQHLELVNCKFGQFPTLKLK 325
Query: 298 -----------------FSSCLSLETLDLSNN--NFYGQLFPNFMNLTHLSSLRLNNNHF 338
SLE LDLS N +F G + T L L L+ N
Sbjct: 326 SLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGV 385
Query: 339 SGKMADGLLSSTLLDVLDVSNNKLSGDIPHWI-GNFSVLWLLLMSENYLQGSIPVQLGNL 397
M+ L L+ LD ++ L + + L L +S + + + L
Sbjct: 386 IT-MSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGL 444
Query: 398 ESLEFIDISENGLSVSMV--SLSNLSSVKHIYLHNNAINGLIPIALLRSSTLLTLDLRDN 455
SLE + ++ N + + + L ++ + L + L P A S+L L++ N
Sbjct: 445 SSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHN 504
Query: 456 KFFGRIPHQINELSNLHFLLLRGNSLQGRIPN 487
FF L++L L N +
Sbjct: 505 NFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQ 536
|
| >3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605 | Back alignment and structure |
|---|
Score = 187 bits (476), Expect = 6e-53
Identities = 106/506 (20%), Positives = 183/506 (36%), Gaps = 34/506 (6%)
Query: 2 DSFGSLKQLKILNLGFNFFIDSILPYLNTLTSLTTLNLRYNKIEGSRTKQGICNLKNLLE 61
+F L L+ L + L +L LN+ +N I+ + + NL NL
Sbjct: 94 GAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEH 153
Query: 62 LDLSSNNFEGHLPQCLNNLTHLKV----LDISYNQLSGNFPSVLTNLTSLEYLDLSFIDF 117
LDLSSN + L L + + LD+S N ++ P + L L L
Sbjct: 154 LDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEI-RLHKLTLRNNFD 212
Query: 118 QGTFLINSLANHSKLEVLVLSSGNDMLQVKTENW-------LPTYPLKVLQLSHCHLNVN 170
+ + + LEV L G + E + L ++ +L++ ++
Sbjct: 213 SLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLD 272
Query: 171 SSFLLHQH--HLKFLDLSHNQLVGNFPTWLLQNNTGLEVLILWNNSFSGILPRLPNAKYD 228
L ++ L + N G + L L N F
Sbjct: 273 DIIDLFNCLTNVSSFSLVSVTIERVKD---FSYNFGWQHLELVNCKFGQFPTLKLK---- 325
Query: 229 KLRHLDISTNNFSGKLPENLGIVFQKLIYLDVSKN--SFEGNIPYSISEMKELITLDLSR 286
L+ L ++N E + L +LD+S+N SF+G S L LDLS
Sbjct: 326 SLKRLTFTSNKGGNAFSE---VDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSF 382
Query: 287 NNFSGELPRSIFSSCLSLETLDLSNNNFYGQLFPN-FMNLTHLSSLRLNNNHFSGKMADG 345
N + + F LE LD ++N + F++L +L L +++ H
Sbjct: 383 NGVIT-MSSN-FLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGI 440
Query: 346 LLSSTLLDVLDVSNNKLSGDI-PHWIGNFSVLWLLLMSENYLQGSIPVQLGNLESLEFID 404
+ L+VL ++ N + P L L +S+ L+ P +L SL+ ++
Sbjct: 441 FNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLN 500
Query: 405 ISENGLS-VSMVSLSNLSSVKHIYLHNNAINGLIPIALLRSSTLL-TLDLRDNKFFGRIP 462
+S N + L+S++ + N I L + L L+L N F
Sbjct: 501 MSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCE 560
Query: 463 HQ--INELSNLHFLLLRGNSLQGRIP 486
HQ + + + LL+ ++ P
Sbjct: 561 HQSFLQWIKDQRQLLVEVERMECATP 586
|
| >3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605 | Back alignment and structure |
|---|
Score = 157 bits (399), Expect = 4e-42
Identities = 84/446 (18%), Positives = 152/446 (34%), Gaps = 29/446 (6%)
Query: 58 NLLELDLSSNNFEGHLPQCLNNLTHLKVLDISYNQLSGNFPSVLTNLTSLEYLDLSFIDF 117
+ LDLS N + L+VLD+S ++ +L+ L L L+
Sbjct: 29 STKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPI 88
Query: 118 QGTFLINSLANHSKLEVLVLSSGN-DMLQVKTENWLPTYPLKVLQLSHCHLNV--NSSFL 174
Q + + + S L+ LV N L+ L T LK L ++H + +
Sbjct: 89 QS-LALGAFSGLSSLQKLVAVETNLASLENFPIGHLKT--LKELNVAHNLIQSFKLPEYF 145
Query: 175 LHQHHLKFLDLSHNQLVGNFPTWLL---QNNTGLEVLILWNNSFSGILPRLPNAKYDKLR 231
+ +L+ LDLS N++ + T L Q L L N + I P +L
Sbjct: 146 SNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEI--RLH 203
Query: 232 HLDISTNNFSGKLPENLGIVFQKLIYLDVSKNSFEGNIPYSISEMK--------ELITLD 283
L + N S + + L + F + +
Sbjct: 204 KLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFR 263
Query: 284 LSRNNFSGELPRSIFSSCLSLETLDLSNNNFYGQLFPNFMNLTHLSSLRLNNNHFSGKMA 343
L+ ++ + +F+ ++ + L + +F L L N F
Sbjct: 264 LAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIER--VKDFSYNFGWQHLELVNCKFG---- 317
Query: 344 DGLLSSTLLDVLDVSNNKLSGDIPHWIGNFSVLWLLLMSENYLQ--GSIPVQLGNLESLE 401
+ L + ++ G + L L +S N L G SL+
Sbjct: 318 -QFPTLKLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLK 376
Query: 402 FIDISENGLSVSMVSLSNLSSVKHIYLHNNAINGLIPIALLRS-STLLTLDLRDNKFFGR 460
++D+S NG+ + L ++H+ ++ + + ++ S L+ LD+
Sbjct: 377 YLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVA 436
Query: 461 IPHQINELSNLHFLLLRGNSLQGRIP 486
N LS+L L + GNS Q
Sbjct: 437 FNGIFNGLSSLEVLKMAGNSFQENFL 462
|
| >3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605 | Back alignment and structure |
|---|
Score = 98.2 bits (245), Expect = 5e-22
Identities = 48/214 (22%), Positives = 82/214 (38%), Gaps = 11/214 (5%)
Query: 280 ITLDLSRNNFSGELPRSIFSSCLSLETLDLSNNNFYGQLFPNFMNLTHLSSLRLNNNHFS 339
IT NF ++P ++ S + LDLS N +F + L L L+
Sbjct: 10 ITYQCMELNFY-KIPDNLPFS---TKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQ 65
Query: 340 GKMADGLLSSTLLDVLDVSNNKLSGDIPHWIGNFSVLWLLLMSENYLQGSIPVQLGNLES 399
S + L L ++ N + S L L+ E L +G+L++
Sbjct: 66 TIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKT 125
Query: 400 LEFIDISENGLSVSMV--SLSNLSSVKHIYLHNNAINGLIPIALLR----SSTLLTLDLR 453
L+ ++++ N + + SNL++++H+ L +N I + L L+LDL
Sbjct: 126 LKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLS 185
Query: 454 DNKFFGRIPHQINELSNLHFLLLRGNSLQGRIPN 487
N I + LH L LR N +
Sbjct: 186 LNPMNF-IQPGAFKEIRLHKLTLRNNFDSLNVMK 218
|
| >3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606 | Back alignment and structure |
|---|
Score = 197 bits (503), Expect = 1e-56
Identities = 98/493 (19%), Positives = 167/493 (33%), Gaps = 17/493 (3%)
Query: 2 DSFGSLKQLKILNLGFNFFIDSILPYLNTLTSLTTLNLRYNKIEGSRTKQGICNLKNLLE 61
D+F S +L L L N I L+ +L L I + N K L
Sbjct: 75 DTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLFFIQTGISSIDF-IPLHNQKTLES 133
Query: 62 LDLSSNNFEGHLPQCLNNLTHLKVLDISYNQLSGNFPSVLTNLTSLEYLDLSFIDFQGTF 121
L L SN+ LKVLD N + +++L L L+
Sbjct: 134 LYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDIAG 193
Query: 122 LINSLANHSKLEVLVLSSGNDMLQVKTENWLPTYP-LKVLQLSHCHLNVNSSFL---LHQ 177
+ + + + L ++L + T L + S + L +
Sbjct: 194 IEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCE 253
Query: 178 HHLKFLDLSHNQLVGNFPTWLLQNNTGLEVLILWNNSFSGILPRLPNAKYDKLRHLDIST 237
++ ++L + +GL+ L L S + L L+ L +S
Sbjct: 254 MSVESINLQKHYFFNISSNTF-HCFSGLQELDLTATHLSELPSGLVGLS--TLKKLVLSA 310
Query: 238 NNFSGKLPENLGIVFQKLIYLDVSKNSFEGNI-PYSISEMKELITLDLSRNNFSG-ELPR 295
N F L + F L +L + N+ + + ++ L LDLS ++ +
Sbjct: 311 NKFEN-LCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCN 369
Query: 296 SIFSSCLSLETLDLSNNNFYGQLFPNFMNLTHLSSLRLNNNHFSGKMADGLLSS-TLLDV 354
+ L++L+LS N F L L L K A + LL V
Sbjct: 370 LQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKV 429
Query: 355 LDVSNNKLSGDIPHWIGNFSVLWLLLMSENYLQGSIPVQ---LGNLESLEFIDISENGLS 411
L++S++ L L L + N+ + L L LE + +S LS
Sbjct: 430 LNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLS 489
Query: 412 -VSMVSLSNLSSVKHIYLHNNAINGLIPIALLRSSTLLTLDLRDNKFFGRIPHQINELSN 470
+ + ++L + H+ L +N + L + L+L N +P + LS
Sbjct: 490 SIDQHAFTSLKMMNHVDLSHNRLTSSSI-EALSHLKGIYLNLASNHISIILPSLLPILSQ 548
Query: 471 LHFLLLRGNSLQG 483
+ LR N L
Sbjct: 549 QRTINLRQNPLDC 561
|
| >3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606 | Back alignment and structure |
|---|
Score = 195 bits (497), Expect = 8e-56
Identities = 92/497 (18%), Positives = 162/497 (32%), Gaps = 17/497 (3%)
Query: 2 DSFGSLKQLKILNLGFNFFIDSILPYLNTLTSLTTLNLRYNKIEGSRTKQGICNLKNLLE 61
+F L L L+L + L TL L N + + + K L
Sbjct: 51 TTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFM-AETALSGPKALKH 109
Query: 62 LDLSSNNFEGHLPQCLNNLTHLKVLDISYNQLSGNFPSVLTNLTSLEYLDLSFIDFQGTF 121
L L+N L+ L + N +S L+ LD
Sbjct: 110 LFFIQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIH-YL 168
Query: 122 LINSLANHSKLEVLVLSSGNDMLQVKTENWLPTYPLKVLQLSHCHLN---VNSSFLLHQH 178
+++ + L L+ + + + + L
Sbjct: 169 SKEDMSSLQQATNLSLNLNGNDIAGIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQ 228
Query: 179 HLKFLDLSHNQLVGNFPTWLLQN-NTGLEVLILWNNSFSGILPRLPNAKYDKLRHLDIST 237
L P +E + L + F I + + L+ LD++
Sbjct: 229 SLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFNISSNTFH-CFSGLQELDLTA 287
Query: 238 NNFSGKLPENLGIVFQKLIYLDVSKNSFEGNIPYSISEMKELITLDLSRNNFSGELPRSI 297
+ S +LP L L L +S N FE S S L L + N EL
Sbjct: 288 THLS-ELPSGLV-GLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGC 345
Query: 298 FSSCLSLETLDLSNNNFYGQLFPN--FMNLTHLSSLRLNNNHFSGKMADGLLSSTLLDVL 355
+ +L LDLS+++ N NL+HL SL L+ N + L++L
Sbjct: 346 LENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELL 405
Query: 356 DVSNNKLSG-DIPHWIGNFSVLWLLLMSENYLQGSIPVQLGNLESLEFIDISENGLS--- 411
D++ +L D N +L +L +S + L S L +L+ +++ N
Sbjct: 406 DLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGN 465
Query: 412 -VSMVSLSNLSSVKHIYLHNNAINGLIPIALLRSSTLLTLDLRDNKFFGRIPHQINELSN 470
SL L ++ + L ++ + A + +DL N+ ++ L
Sbjct: 466 IQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKG 525
Query: 471 LHFLLLRGNSLQGRIPN 487
++ L L N + +P+
Sbjct: 526 IY-LNLASNHISIILPS 541
|
| >3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606 | Back alignment and structure |
|---|
Score = 175 bits (446), Expect = 1e-48
Identities = 95/469 (20%), Positives = 157/469 (33%), Gaps = 18/469 (3%)
Query: 31 LTSLTTLNLRYNKIEGSRTKQGICNLKNLLELDLSSNNFEGHLPQCLNNLTHLKVLDISY 90
S L +N + L NL LDL+ + L L ++
Sbjct: 32 PNSTECLEFSFNVLPTI-QNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTA 90
Query: 91 NQLSGNFPSVLTNLTSLEYLDLSFIDFQGTFLINSLANHSKLEVLVLSSGNDMLQVKTEN 150
N L + L+ +L++L L N LE L L N + +K
Sbjct: 91 NPLIFMAETALSGPKALKHLFFIQTGISSIDF-IPLHNQKTLESLYL-GSNHISSIKLPK 148
Query: 151 WLPTYPLKVLQLSHCHLNVNSSFL---LHQHHLKFLDLSHNQLVGNFPTWLLQNNTGLEV 207
PT LKVL + ++ S L Q L+L+ N + + +
Sbjct: 149 GFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDI-AGIEPGAFDSAVFQSL 207
Query: 208 LILWNNSFSGILPRLPNAKYDKLRHLDISTNNFSGKLPENL-GIVFQKLIYLDVSKNSFE 266
+ I L N+ L + P G+ + +++ K+ F
Sbjct: 208 NFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFF 267
Query: 267 GNIPYSISEMKELITLDLSRNNFSGELPRSIFSSCLSLETLDLSNNNFYGQLFPNFMNLT 326
+ L LDL+ + S ELP +L+ L LS N F + N
Sbjct: 268 NISSNTFHCFSGLQELDLTATHLS-ELPSG-LVGLSTLKKLVLSANKFENLCQISASNFP 325
Query: 327 HLSSLRLNNNHFSGKMADGLLSS-TLLDVLDVSNNKL--SGDIPHWIGNFSVLWLLLMSE 383
L+ L + N ++ G L + L LD+S++ + S + N S L L +S
Sbjct: 326 SLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSY 385
Query: 384 NYLQGSIPVQLGNLESLEFIDISENGLSV--SMVSLSNLSSVKHIYLHNNAINGLIPIAL 441
N LE +D++ L V + NL +K + L ++ ++
Sbjct: 386 NEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLF 445
Query: 442 LRSSTLLTLDLRDNKFFGRIPHQIN---ELSNLHFLLLRGNSLQGRIPN 487
L L+L+ N F + N L L L+L L +
Sbjct: 446 DGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQH 494
|
| >3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606 | Back alignment and structure |
|---|
Score = 160 bits (408), Expect = 2e-43
Identities = 94/451 (20%), Positives = 168/451 (37%), Gaps = 13/451 (2%)
Query: 2 DSFGSLKQLKILNLGFNFFIDSILPYLNTLTSLTTLNLRYNKIEGSRTKQGICNLKNLLE 61
+ K L+ L LG N LP L L+ + N I +K+ + +L+
Sbjct: 123 IPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYL-SKEDMSSLQQATN 181
Query: 62 LDLS-SNNFEGHLPQCLNNLTHLKVLDISYNQLSGNFPSVLTN--LTSLEYLDLSFIDFQ 118
L L+ + N + + + L+ Q L N + SL +D +
Sbjct: 182 LSLNLNGNDIAGIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDE 241
Query: 119 GTFLINSLANHSKLEVLVLS-SGNDMLQVKTENWLPTYPLKVLQLSHCHLNVNSSFLLHQ 177
++ V ++ + + + + L+ L L+ HL+ S L+
Sbjct: 242 -DISPAVFEGLCEMSVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLSELPSGLVGL 300
Query: 178 HHLKFLDLSHNQLVGNFPTWLLQNNTGLEVLILWNNSFSGILPRLPNAKYDKLRHLDIST 237
LK L LS N+ N N L L + N+ L + LR LD+S
Sbjct: 301 STLKKLVLSANKF-ENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSH 359
Query: 238 NNFSGKLPENLGIV-FQKLIYLDVSKNSFEGNIPYSISEMKELITLDLSRNNFSGELPRS 296
++ NL + L L++S N + E +L LDL+ + +S
Sbjct: 360 DDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQS 419
Query: 297 IFSSCLSLETLDLSNNNFYGQLFPNFMNLTHLSSLRLNNNHFSG---KMADGLLSSTLLD 353
F + L+ L+LS++ F L L L L NHF + + L + L+
Sbjct: 420 PFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLE 479
Query: 354 VLDVSNNKLSGDIPHWIGNFSVLWLLLMSENYLQGSIPVQLGNLESLEFIDISENGL-SV 412
+L +S LS H + ++ + +S N L S L +L+ + +++++ N + +
Sbjct: 480 ILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGI-YLNLASNHISII 538
Query: 413 SMVSLSNLSSVKHIYLHNNAINGLIPIALLR 443
L LS + I L N ++
Sbjct: 539 LPSLLPILSQQRTINLRQNPLDCTCSNIYFL 569
|
| >3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606 | Back alignment and structure |
|---|
Score = 98.2 bits (245), Expect = 5e-22
Identities = 44/210 (20%), Positives = 76/210 (36%), Gaps = 8/210 (3%)
Query: 281 TLDLSRNNFSGELPRSIFSSCLSLETLDLSNNNFYGQLFPNFMNLTHLSSLRLNNNHFSG 340
T + + E+P ++ +S E L+ S N F L +L+ L L
Sbjct: 16 TYNCENLGLN-EIPGTLPNS---TECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYW 71
Query: 341 KMADGLLSSTLLDVLDVSNNKLSGDIPHWIGNFSVLWLLLMSENYLQGSIPVQLGNLESL 400
D S LD L ++ N L + L L + + + L N ++L
Sbjct: 72 IHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLFFIQTGISSIDFIPLHNQKTL 131
Query: 401 EFIDISENGL-SVSMVSLSNLSSVKHIYLHNNAINGLIPIAL--LRSSTLLTLDLRDNKF 457
E + + N + S+ + +K + NNAI+ L + L+ +T L+L+L N
Sbjct: 132 ESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGN-D 190
Query: 458 FGRIPHQINELSNLHFLLLRGNSLQGRIPN 487
I + + L G I
Sbjct: 191 IAGIEPGAFDSAVFQSLNFGGTQNLLVIFK 220
|
| >3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606 | Back alignment and structure |
|---|
Score = 91.2 bits (227), Expect = 9e-20
Identities = 45/213 (21%), Positives = 76/213 (35%), Gaps = 12/213 (5%)
Query: 2 DSFGSLKQLKILNLGFNFFIDSILPYLNTLTSLTTLNLRYNKIEGSRTKQGICNLKNLLE 61
+L L+ LNL +N + L L+L + +++ + NL L
Sbjct: 370 LQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKV 429
Query: 62 LDLSSNNFEGHLPQCLNNLTHLKVLDISYNQLSGNF---PSVLTNLTSLEYLDLSFIDFQ 118
L+LS + + Q + L L+ L++ N + L L LE L LSF D
Sbjct: 430 LNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLS 489
Query: 119 GTFLINSLANHSKLEVLVLSSGNDMLQVKTENWLPTYPLKVLQLSHCHL-NVNSSFLLHQ 177
++ + + + LS L + L L L+ H+ + S L
Sbjct: 490 S-IDQHAFTSLKMMNHVDLSHNR--LTSSSIEALSHLKGIYLNLASNHISIILPSLLPIL 546
Query: 178 HHLKFLDLSHNQLVGN-----FPTWLLQNNTGL 205
+ ++L N L F W +N L
Sbjct: 547 SQQRTINLRQNPLDCTCSNIYFLEWYKENMQKL 579
|
| >4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636 | Back alignment and structure |
|---|
Score = 177 bits (452), Expect = 2e-49
Identities = 77/517 (14%), Positives = 174/517 (33%), Gaps = 48/517 (9%)
Query: 3 SFGSLKQLKILNLGFNFFIDSILPYLNTLTSLTTLNLRYNKIEGSRTKQG---ICNLKNL 59
S S ++ L+L + + LT L L L + + + G I +
Sbjct: 76 SLNSNGRVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSD 135
Query: 60 LELDLSSNNFEGHLPQCL--NNLTHLKVLDISYNQLSGNFPSVLTNLTSLEYLDLSFIDF 117
+ +++ + + L I+ + + +
Sbjct: 136 EQKQKMRMHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKKSSRITLKDTQIGQL--SN 193
Query: 118 QGTFLINSLANHSKLEVLVLSSGNDMLQVKTENWLPTYPLKVLQLSHCHLNVNSSFLLHQ 177
TF+ ++ +KL + + EN + + + + + + + +
Sbjct: 194 NITFVSKAVMRLTKLRQFYMGNS----PFVAENICEAWENENSEYAQQYKTEDLKW-DNL 248
Query: 178 HHLKFLDLSHNQLVGNFPTWLLQNNTGLEVLILWNNSFSGILPRLPN-------AKYDKL 230
L +++ + + PT+ L+ ++++ + N + +K+
Sbjct: 249 KDLTDVEVYNCPNLTKLPTF-LKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKI 307
Query: 231 RHLDISTNNF-SGKLPENLGIVFQKLIYLDVSKNSFEGNIPYSISEMKELITLDLSRNNF 289
+ + I NN + + +L +KL L+ N EG +P + +L +L+L+ N
Sbjct: 308 QIIYIGYNNLKTFPVETSLQ-KMKKLGMLECLYNQLEGKLP-AFGSEIKLASLNLAYNQI 365
Query: 290 SGELPRSIFSSCLSLETLDLSNNNFYG-QLFPNFMNLTHLSSLRLNNNHFSG-------K 341
+ +P + +E L ++N + +++ +S++ + N
Sbjct: 366 TE-IPANFCGFTEQVENLSFAHNKLKYIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDP 424
Query: 342 MADGLLSSTLLDVLDVSNNKLSGDIPHWIGNFSVLWLLLMSENYLQG-------SIPVQL 394
+ + +++SNN++S S L + + N L
Sbjct: 425 LDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLTEIPKNSLKDENENF 484
Query: 395 GNLESLEFIDISENGLSV--SMVSLSNLSSVKHIYLHNNAINGLIPIALLRSSTLLTLDL 452
N L ID+ N L+ + L + I L N+ + P L SSTL +
Sbjct: 485 KNTYLLTSIDLRFNKLTKLSDDFRATTLPYLVGIDLSYNSFSK-FPTQPLNSSTLKGFGI 543
Query: 453 RD------NKFFGRIPHQINELSNLHFLLLRGNSLQG 483
R+ N+ P I +L L + N ++
Sbjct: 544 RNQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDIRK 580
|
| >4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636 | Back alignment and structure |
|---|
Score = 174 bits (442), Expect = 7e-48
Identities = 74/483 (15%), Positives = 148/483 (30%), Gaps = 49/483 (10%)
Query: 6 SLKQLKILNLGFNFFIDSILPYLNTLTSLTTLNLRYNKIEGSRTKQGICNLKNLLELDLS 65
L + + SI T + N I + + L L + +
Sbjct: 157 DFSDLIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNITFV--SKAVMRLTKLRQFYMG 214
Query: 66 SNNFEGHLPQCLNNLTHLKVLDISYNQLSGNFPSVLTNLTSLEYLDLSFIDFQGTFLINS 125
++ F + Y Q NL L +++ L
Sbjct: 215 NSPFVAENICEAWENENS-----EYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTK-LPTF 268
Query: 126 LANHSKLEVLVLSSGNDMLQVKTENWLPTYP--------LKVLQLSHCHLNV--NSSFLL 175
L +++++ ++ N + + ++++ + + +L + L
Sbjct: 269 LKALPEMQLINVAC-NRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKTFPVETSLQ 327
Query: 176 HQHHLKFLDLSHNQLVGNFPTWLLQNNTGLEVLILWNNSFSGILPRLPNAKYDKLRHLDI 235
L L+ +NQL G P + L L L N + I +++ +L
Sbjct: 328 KMKKLGMLECLYNQLEGKLPA--FGSEIKLASLNLAYNQITEIPANFCG-FTEQVENLSF 384
Query: 236 STNNFSGKLPENLGIV-FQKLIYLDVSKNSFEG-------NIPYSISEMKELITLDLSRN 287
+ N +P + +D S N + + + + +++LS N
Sbjct: 385 AHNKLKY-IPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNN 443
Query: 288 NFSGELPRSIFSSCLSLETLDLSNNNF-------YGQLFPNFMNLTHLSSLRLNNNHFSG 340
S P+ +FS+ L +++L N NF N L+S+ L N +
Sbjct: 444 QISK-FPKELFSTGSPLSSINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFNKLTK 502
Query: 341 KMADGLLSS-TLLDVLDVSNNKLSGDIPHWIGNFSVLWLL------LMSENYLQGSIPVQ 393
D ++ L +D+S N S P N S L N P
Sbjct: 503 LSDDFRATTLPYLVGIDLSYNSFSK-FPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEG 561
Query: 394 LGNLESLEFIDISENGLSVSMVSLSNLSSVKHIYLHNNAINGLIPIALLRSSTLLTLDLR 453
+ SL + I N + V+ ++ + + +N + + L
Sbjct: 562 ITLCPSLTQLQIGSNDI--RKVNEKITPNISVLDIKDNPNISIDLSYVCPYIEAGMYMLF 619
Query: 454 DNK 456
+K
Sbjct: 620 YDK 622
|
| >4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636 | Back alignment and structure |
|---|
Score = 168 bits (427), Expect = 7e-46
Identities = 70/512 (13%), Positives = 153/512 (29%), Gaps = 59/512 (11%)
Query: 2 DSFGSLKQLKILNLGFNFFIDSILPYL--NTLTSLTTLNLRYNKIEGSRTKQGICNLKNL 59
+ + + + + Y + L + + + S K+
Sbjct: 127 KGISANMSDEQKQKMRMHYQKTFVDYDPREDFSDLIKDCINSDPQQKS-IKKSSRITLKD 185
Query: 60 LELDLSSNNFEGHLPQCLNNLTHLKVLDISYNQLSGNFPSVLTNLTSLEYLDLSFIDFQG 119
++ SNN + + + LT L+ + + + EY
Sbjct: 186 TQIGQLSNNITF-VSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQY------ 238
Query: 120 TFLINSLANHSKLEVLVLSSGNDMLQVKTENWLPTYPLKVLQLSHCHLN---------VN 170
N L + + + ++ ++ T ++++ ++
Sbjct: 239 KTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPE-MQLINVACNRGISGEQLKDDWQA 297
Query: 171 SSFLLHQHHLKFLDLSHNQLVGNFPTWLLQNNTGLEVLILWNNSFSGILPRLPNAKYDKL 230
+ ++ + + +N L LQ L +L N G LP + KL
Sbjct: 298 LADAPVGEKIQIIYIGYNNLKTFPVETSLQKMKKLGMLECLYNQLEGKLPAFGSEI--KL 355
Query: 231 RHLDISTNNFSGKLPENLGIVFQKLIYLDVSKNSFEGN-IPYSISEMKELITLDLSRNNF 289
L+++ N + +P N +++ L + N + + + + +D S N
Sbjct: 356 ASLNLAYNQITE-IPANFCGFTEQVENLSFAHNKLKYIPNIFDAKSVSVMSAIDFSYNEI 414
Query: 290 SGELPRSI------FSSCLSLETLDLSNNNFYGQLFPNFMNLTHLSSLRLNNNHFSGKMA 343
++ +++ +++LSNN F + LSS+ L N +
Sbjct: 415 GSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLTEIPK 474
Query: 344 DGLLSS-------TLLDVLDVSNNKLSGDIP-HWIGNFSVLWLLLMSENYLQGSIPVQLG 395
+ L LL +D+ NKL+ L + +S N P Q
Sbjct: 475 NSLKDENENFKNTYLLTSIDLRFNKLTKLSDDFRATTLPYLVGIDLSYNSFSK-FPTQPL 533
Query: 396 NLESLEFIDISENGLSVSMVSLSNLSSVKHIYLHNNAINGLIPIALLRSSTLLTLDLRDN 455
N +L+ I N P + +L L + N
Sbjct: 534 NSSTLKGFGIRNQ-----------------RDAQGNRTLREWPEGITLCPSLTQLQIGSN 576
Query: 456 KFFGRIPHQINELSNLHFLLLRGNSLQGRIPN 487
++ +I N+ L ++ N +
Sbjct: 577 DI-RKVNEKI--TPNISVLDIKDNPNISIDLS 605
|
| >4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636 | Back alignment and structure |
|---|
Score = 144 bits (366), Expect = 2e-37
Identities = 58/419 (13%), Positives = 138/419 (32%), Gaps = 35/419 (8%)
Query: 93 LSGNFPSV-LTNLTSLEYLDLSFIDFQGTFLINSLANHSKLEVLVLSSGNDMLQVKTENW 151
+ G P V L + + L L G + +++ ++LEVL L S + + +
Sbjct: 68 MWGAQPGVSLNSNGRVTGLSLEGFGASGR-VPDAIGQLTELEVLALGSHGEKVNERLFGP 126
Query: 152 LPTYPLKVLQLSHC-HLNVNSSFLLHQHHLKFLDLSHNQLVGNFPTW----LLQNNTGLE 206
+ ++ +F+ + F DL + + + +
Sbjct: 127 KGISANMSDEQKQKMRMHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKKSSRITLKDT 186
Query: 207 VLILWNNSFSGILPRLPNAKYDKLRHLDISTNNFSGKLPENLGIVFQKLIYLDVSKNSFE 266
+ +N+ + + + KLR + + F + +
Sbjct: 187 QIGQLSNNITFVSKAVMRLT--KLRQFYMGNSPFVAENICEAWEN------ENSEYAQQY 238
Query: 267 GNIPYSISEMKELITLDLSRNNFSGELPRSIFSSCLSLETLDLSNNNF--------YGQL 318
+K+L +++ +LP + + ++ ++++ N Q
Sbjct: 239 KTEDLKWDNLKDLTDVEVYNCPNLTKLPTFL-KALPEMQLINVACNRGISGEQLKDDWQA 297
Query: 319 FPNFMNLTHLSSLRLNNNHF-SGKMADGLLSSTLLDVLDVSNNKLSGDIPHWIGNFSVLW 377
+ + + + N+ + + L L +L+ N+L G +P G+ L
Sbjct: 298 LADAPVGEKIQIIYIGYNNLKTFPVETSLQKMKKLGMLECLYNQLEGKLPA-FGSEIKLA 356
Query: 378 LLLMSENYLQGSIPVQLGNLESLEFIDISENGLSV--SMVSLSNLSSVKHIYLHNNAING 435
L ++ N + G E +E + + N L ++ ++S + I N I
Sbjct: 357 SLNLAYNQITEIPANFCGFTEQVENLSFAHNKLKYIPNIFDAKSVSVMSAIDFSYNEIGS 416
Query: 436 L-------IPIALLRSSTLLTLDLRDNKFFGRIPHQINELSNLHFLLLRGNSLQGRIPN 487
+ + + + +++L +N+ + S L + L GN L N
Sbjct: 417 VDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLTEIPKN 475
|
| >4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636 | Back alignment and structure |
|---|
Score = 130 bits (328), Expect = 2e-32
Identities = 52/350 (14%), Positives = 106/350 (30%), Gaps = 42/350 (12%)
Query: 3 SFGSLKQLKILNLGFNFFID-SILPYLNTLTSLTTLNLRYNKIEGSRTKQGICNLKNLLE 61
++++I+ +G+N + L + L L YN++EG + L
Sbjct: 300 DAPVGEKIQIIYIGYNNLKTFPVETSLQKMKKLGMLECLYNQLEGKL--PAFGSEIKLAS 357
Query: 62 LDLSSNNFEGHLPQCLNNLTHLKVLDISYNQLSGNFPSVL--TNLTSLEYLDLSFIDFQG 119
L+L+ N ++ L ++N+L P++ +++ + +D S+ +
Sbjct: 358 LNLAYNQITEIPANFCGFTEQVENLSFAHNKLKY-IPNIFDAKSVSVMSAIDFSYNEIGS 416
Query: 120 TFLINSLANHSKLEVLVLSSGNDMLQVKTENWLPTYPLKVLQLSHCHLNVNSSFLLHQ-H 178
+ + + + + LS+ ++ L
Sbjct: 417 --VDGKNFDPLDPTPFKGIN-----------------VSSINLSNNQISKFPKELFSTGS 457
Query: 179 HLKFLDLSHNQLVGNFPTWL------LQNNTGLEVLILWNNSFSGILPRLPNAKYDKLRH 232
L ++L N L L +N L + L N + + L
Sbjct: 458 PLSSINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFNKLTKLSDDFRATTLPYLVG 517
Query: 233 LDISTNNFSGKLPENLG-----IVFQKLIYLDVSKNSFEGNIPYSISEMKELITLDLSRN 287
+D+S N+FS P F D N P I+ L L + N
Sbjct: 518 IDLSYNSFSK-FPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSN 576
Query: 288 NFSGELPRSIFSSCLSLETLDLSNNNFYGQLFPNFMNLTHLSSLRLNNNH 337
+ + I ++ LD+ +N L +
Sbjct: 577 DIRK-VNEKITP---NISVLDIKDNPNISIDLSYVCPYIEAGMYMLFYDK 622
|
| >4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636 | Back alignment and structure |
|---|
Score = 95.5 bits (238), Expect = 4e-21
Identities = 22/231 (9%), Positives = 61/231 (26%), Gaps = 12/231 (5%)
Query: 259 DVSKNSFEGNIPYSISEMKELITLDLSRNNFSGELPRSIFSSCLSLETLDLSNNNFYGQ- 317
+ + + S++ + L L SG +P +I LE L L ++
Sbjct: 63 NKELDMWGAQPGVSLNSNGRVTGLSLEGFGASGRVPDAI-GQLTELEVLALGSHGEKVNE 121
Query: 318 ---LFPNFMNLTHLSSLRLNNNHFSGKMADGLLSSTLLDV--LDVSNNKLSGDIPHWIGN 372
+ H+ D D+ ++++ I
Sbjct: 122 RLFGPKGISANMSDEQKQKMRMHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKKSSRI 181
Query: 373 FSVLWLLLMSENYLQGSIPVQLGNLESLEFIDISENGLSVSMVSLSNLSSVKHIYLHNNA 432
+ N + + + L L + + + + + ++
Sbjct: 182 TLKDTQIGQLSNNI-TFVSKAVMRLTKLRQFYMGNSPFV----AENICEAWENENSEYAQ 236
Query: 433 INGLIPIALLRSSTLLTLDLRDNKFFGRIPHQINELSNLHFLLLRGNSLQG 483
+ L +++ + ++P + L + + + N
Sbjct: 237 QYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGIS 287
|
| >4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636 | Back alignment and structure |
|---|
Score = 90.9 bits (226), Expect = 1e-19
Identities = 25/206 (12%), Positives = 57/206 (27%), Gaps = 11/206 (5%)
Query: 288 NFSGELPRSIFSSCLSLETLDLSNNNFYGQLFPNFMNLTHLSSLRLNNNHFSGKMADGLL 347
+ G P +S + L L G++ LT L L L ++
Sbjct: 67 DMWGAQPGVSLNSNGRVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLFGP 126
Query: 348 SS----TLLDVLDVSNNKLSGDIPHWIG--NFSVLWLLLMSENYLQGSIPVQLGNLESLE 401
+ + +FS L ++ + Q SI
Sbjct: 127 KGISANMSDEQKQKMRMHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKKSSRITLKDT 186
Query: 402 FIDISENGLSVSMVSLSNLSSVKHIYLHNNAINGLIPIALLRSSTLLTLDLRDNKFFGRI 461
I N ++ ++ L+ ++ Y+ N+ + + +
Sbjct: 187 QIGQLSNNITFVSKAVMRLTKLRQFYMGNSPFVAENI-----CEAWENENSEYAQQYKTE 241
Query: 462 PHQINELSNLHFLLLRGNSLQGRIPN 487
+ + L +L + + ++P
Sbjct: 242 DLKWDNLKDLTDVEVYNCPNLTKLPT 267
|
| >4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636 | Back alignment and structure |
|---|
Score = 42.7 bits (101), Expect = 2e-04
Identities = 15/138 (10%), Positives = 40/138 (28%), Gaps = 10/138 (7%)
Query: 360 NKLSGDIPHWIGNFSVL---WLLLMSENYLQGSIPVQLGNLESLEFIDISENGLSVSM-V 415
+ L+G G + W + V L + + + + G S +
Sbjct: 40 DALNGKNWSQQGFGTQPGANWNFNKELDMWGAQPGVSLNSNGRVTGLSLEGFGASGRVPD 99
Query: 416 SLSNLSSVKHIYLHNNAING----LIPIALLRSSTLLTLDLRDNKFFGRIPHQI--NELS 469
++ L+ ++ + L ++ P + + + + + S
Sbjct: 100 AIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQKQKMRMHYQKTFVDYDPREDFS 159
Query: 470 NLHFLLLRGNSLQGRIPN 487
+L + + Q I
Sbjct: 160 DLIKDCINSDPQQKSIKK 177
|
| >1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313 | Back alignment and structure |
|---|
Score = 170 bits (433), Expect = 2e-49
Identities = 74/273 (27%), Positives = 131/273 (47%), Gaps = 9/273 (3%)
Query: 212 NNSFSGILPRLPNAKYDKLRHLDISTNNFSG--KLPENLGIVFQKLIYLDVSK-NSFEGN 268
N ++ G+L + + ++ +LD+S N +P +L L +L + N+ G
Sbjct: 35 NRTWLGVLCD-TDTQTYRVNNLDLSGLNLPKPYPIPSSLA-NLPYLNFLYIGGINNLVGP 92
Query: 269 IPYSISEMKELITLDLSRNNFSGELPRSIFSSCLSLETLDLSNNNFYGQLFPNFMNLTHL 328
IP +I+++ +L L ++ N SG +P + S +L TLD S N G L P+ +L +L
Sbjct: 93 IPPAIAKLTQLHYLYITHTNVSGAIPDFL-SQIKTLVTLDFSYNALSGTLPPSISSLPNL 151
Query: 329 SSLRLNNNHFSGKMADGLLS-STLLDVLDVSNNKLSGDIPHWIGNFSVLWLLLMSENYLQ 387
+ + N SG + D S S L + +S N+L+G IP N ++ ++ L S N L+
Sbjct: 152 VGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLAFVDL-SRNMLE 210
Query: 388 GSIPVQLGNLESLEFIDISENGLSVSMVSLSNLSSVKHIYLHNNAINGLIPIALLRSSTL 447
G V G+ ++ + I +++N L+ + + ++ + L NN I G +P L + L
Sbjct: 211 GDASVLFGSDKNTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFL 270
Query: 448 LTLDLRDNKFFGRIPHQINELSNLHFLLLRGNS 480
+L++ N G IP Q L N
Sbjct: 271 HSLNVSFNNLCGEIP-QGGNLQRFDVSAYANNK 302
|
| >1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313 | Back alignment and structure |
|---|
Score = 148 bits (376), Expect = 4e-41
Identities = 76/337 (22%), Positives = 118/337 (35%), Gaps = 66/337 (19%)
Query: 62 LDLSSNNFEGHLPQCLNNLTHLKVLDISYNQLSGNF--PSVLTNLTSLEYLDLSFI-DFQ 118
D + + G L + LD+S L + PS L NL L +L + I +
Sbjct: 31 TDCCNRTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLV 90
Query: 119 GTFLINSLANHSKLEVLVLSSGNDMLQVKTENWLPTYPLKVLQLSHCHLNVNSSFLLHQH 178
G ++A ++L L
Sbjct: 91 GPIP-PAIAKLTQLHYL------------------------------------------- 106
Query: 179 HLKFLDLSHNQLVGNFPTWLLQNNTGLEVLILWNNSFSGILP----RLPNAKYDKLRHLD 234
++H + G P + L L L N+ SG LP LPN L +
Sbjct: 107 -----YITHTNVSGAIPDF-LSQIKTLVTLDFSYNALSGTLPPSISSLPN-----LVGIT 155
Query: 235 ISTNNFSGKLPENLGIVFQKLIYLDVSKNSFEGNIPYSISEMKELITLDLSRNNFSGELP 294
N SG +P++ G + + +S+N G IP + + + L +DLSRN G+
Sbjct: 156 FDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRNMLEGDAS 214
Query: 295 RSIFSSCLSLETLDLSNNNFYGQLFPNFMNLTHLSSLRLNNNHFSGKMADGLLSSTLLDV 354
S + + + L+ N+ L +L+ L L NN G + GL L
Sbjct: 215 VLFG-SDKNTQKIHLAKNSLAFDL-GKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHS 272
Query: 355 LDVSNNKLSGDIPHWIGNFSVLWLLLMSENYLQGSIP 391
L+VS N L G+IP GN + + N P
Sbjct: 273 LNVSFNNLCGEIPQ-GGNLQRFDVSAYANNKCLCGSP 308
|
| >1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313 | Back alignment and structure |
|---|
Score = 143 bits (363), Expect = 3e-39
Identities = 58/233 (24%), Positives = 96/233 (41%), Gaps = 6/233 (2%)
Query: 258 LDVSKNSFEGNIPYSISEMKELITLDLSRNNFSGELPRS-IFSSCLSLETLDLSN-NNFY 315
D ++ G + + ++ + LDLS N P ++ L L + NN
Sbjct: 31 TDCCNRTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLV 90
Query: 316 GQLFPNFMNLTHLSSLRLNNNHFSGKMADGLLSSTLLDVLDVSNNKLSGDIPHWIGNFSV 375
G + P LT L L + + + SG + D L L LD S N LSG +P I +
Sbjct: 91 GPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPN 150
Query: 376 LWLLLMSENYLQGSIPVQLGNLESL-EFIDISENGLSVSM-VSLSNLSSVKHIYLHNNAI 433
L + N + G+IP G+ L + IS N L+ + + +NL ++ + L N +
Sbjct: 151 LVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANL-NLAFVDLSRNML 209
Query: 434 NGLIPIALLRSSTLLTLDLRDNKFFGRIPHQINELSNLHFLLLRGNSLQGRIP 486
G + + L N + ++ NL+ L LR N + G +P
Sbjct: 210 EGDASVLFGSDKNTQKIHLAKNSLAFDLG-KVGLSKNLNGLDLRNNRIYGTLP 261
|
| >1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313 | Back alignment and structure |
|---|
Score = 142 bits (361), Expect = 7e-39
Identities = 70/338 (20%), Positives = 112/338 (33%), Gaps = 83/338 (24%)
Query: 2 DSFGSLKQLKILNLGFNFF--IDSILPYLNTLTSLTTLNLR-YNKIEGSRTKQGICNLKN 58
D+ ++ L+L I L L L L + N + G I L
Sbjct: 44 DTDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPA-IAKLTQ 102
Query: 59 LLELDLSSNNFEGHLPQCLNNLTHLKVLDISYNQLSGNFPSVLTNLTSLEYLDLSFIDFQ 118
L L ++ N G +P L+ + L LD SYN LSG P +++L +L +
Sbjct: 103 LHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRIS 162
Query: 119 GTFLINSLANHSKLEVLVLSSGNDMLQVKTENWLPTYPLKVLQLSHCHLNVNSSFLLHQH 178
G + +S + SKL
Sbjct: 163 GA-IPDSYGSFSKL---------------------------------------------- 175
Query: 179 HLKFLDLSHNQLVGNFPTWLLQNNTGLEVLILWNNSFSGILPRLPNAKYDKLRHLDISTN 238
+ +S N+L G P +F+ + L +D+S N
Sbjct: 176 -FTSMTISRNRLTGKIPP-----------------TFANL----------NLAFVDLSRN 207
Query: 239 NFSGKLPENLGIVFQKLIYLDVSKNSFEGNIPYSISEMKELITLDLSRNNFSGELPRSIF 298
G G + + ++KNS ++ + K L LDL N G LP+ +
Sbjct: 208 MLEGDASVLFG-SDKNTQKIHLAKNSLAFDLG-KVGLSKNLNGLDLRNNRIYGTLPQGL- 264
Query: 299 SSCLSLETLDLSNNNFYGQLFPNFMNLTHLSSLRLNNN 336
+ L +L++S NN G++ P NL NN
Sbjct: 265 TQLKFLHSLNVSFNNLCGEI-PQGGNLQRFDVSAYANN 301
|
| >1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313 | Back alignment and structure |
|---|
Score = 84.1 bits (209), Expect = 3e-18
Identities = 39/137 (28%), Positives = 62/137 (45%), Gaps = 4/137 (2%)
Query: 355 LDVSNNKLSGDIPHWIGNFSVLWLLLMSENYLQGS--IPVQLGNLESLEFIDIS-ENGLS 411
D N G + + L +S L IP L NL L F+ I N L
Sbjct: 31 TDCCNRTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLV 90
Query: 412 VSM-VSLSNLSSVKHIYLHNNAINGLIPIALLRSSTLLTLDLRDNKFFGRIPHQINELSN 470
+ +++ L+ + ++Y+ + ++G IP L + TL+TLD N G +P I+ L N
Sbjct: 91 GPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPN 150
Query: 471 LHFLLLRGNSLQGRIPN 487
L + GN + G IP+
Sbjct: 151 LVGITFDGNRISGAIPD 167
|
| >3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606 | Back alignment and structure |
|---|
Score = 176 bits (448), Expect = 5e-49
Identities = 92/492 (18%), Positives = 162/492 (32%), Gaps = 24/492 (4%)
Query: 10 LKILNLGFNFFIDSILPYLNTLTSLTTLNLRYNKIEGSRTKQGICNLKNLLELDLSSNNF 69
K ++L FN + + L L+L +IE + L +L L L+ N
Sbjct: 34 TKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIE-DKAWHGLHHLSNLILTGNPI 92
Query: 70 EGHLPQCLNNLTHLKVLDISYNQLSGNFPSVLTNLTSLEYLDLSFIDFQGTFLINSLANH 129
+ P + LT L+ L +L+ + L +L+ L+++ L +N
Sbjct: 93 QSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNL 152
Query: 130 SKLEVLVLSSGN-DMLQVKTENWLP--TYPLKVLQLSHCHLNVNSSFLLHQHHLKFLDLS 186
+ L + LS + V +L L +S ++ L L L
Sbjct: 153 TNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSLNPIDFIQDQAFQGIKLHELTLR 212
Query: 187 HNQLVGNFPTWLLQNNTGLEVLILWNNSFSGI--LPRLPNAKYDKLRHLDISTNNFSGKL 244
N N LQN GL V L F L + + L + I +
Sbjct: 213 GNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLTYTN 272
Query: 245 PENLGIV----FQKLIYLDVSKNSFEGNIPYSISEMKELITLDLSRNNFSGELPRSIFSS 300
+ IV + + ++ S + + + +L + R
Sbjct: 273 DFSDDIVKFHCLANVSAMSLAGVSI--KYLEDVPKHFKWQSLSIIRCQLKQ----FPTLD 326
Query: 301 CLSLETLDLSNNNFYGQLFPNFMNLTHLSSLRLNNNHFSGKMAD--GLLSSTLLDVLDVS 358
L++L L+ N G + + L LS L L+ N S L + L LD+S
Sbjct: 327 LPFLKSLTLTMNK--GSISFKKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLS 384
Query: 359 NNKLSGDIPHWIGNFSVLWLLLMSENYLQGSIPVQ-LGNLESLEFIDISENGLSVSMV-S 416
N + L L + L+ +LE L ++DIS +
Sbjct: 385 FNGAI-IMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGI 443
Query: 417 LSNLSSVKHIYLHNNAINGLIPIALLRS-STLLTLDLRDNKFFGRIPHQINELSNLHFLL 475
L+S+ + + N+ + + + L LDL + + L L L
Sbjct: 444 FLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLN 503
Query: 476 LRGNSLQGRIPN 487
+ N+L +
Sbjct: 504 MSHNNLLFLDSS 515
|
| >3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606 | Back alignment and structure |
|---|
Score = 167 bits (426), Expect = 7e-46
Identities = 103/488 (21%), Positives = 161/488 (32%), Gaps = 36/488 (7%)
Query: 2 DSFGSLKQLKILNLGFNFFIDSILPYLNTLTSLTTLNLRYNKIEGSRTKQGICNLKNLLE 61
SF L L+ L + L +L LN+ +N I + NL NL+
Sbjct: 98 GSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVH 157
Query: 62 LDLSSNNFEGHLPQCLNNLTHLK----VLDISYNQLSGNFPSVLTNLTSLEYLDLSFIDF 117
+DLS N + L L LD+S N + + L L L
Sbjct: 158 VDLSYNYIQTITVNDLQFLRENPQVNLSLDMSLNPIDFIQDQAFQGI-KLHELTLRGNFN 216
Query: 118 QGTFLINSLANHSKLEVLVLSSGNDMLQVKTENWLPTYPLKVLQLSHCHLNVNSSFLLHQ 177
+ L N + L V L G K E L + +++ L
Sbjct: 217 SSNIMKTCLQNLAGLHVHRLILGE----FKDERNLEIFEPSIME------------GLCD 260
Query: 178 HHLKFLDLSHNQLVGNFPTWLLQNNTGLEVLILWNNSFSGILPRLPNAKYDKLRHLDIST 237
+ L++ + + + L S + K+ K + L I
Sbjct: 261 VTIDEFRLTYTNDFSDDI-VKFHCLANVSAMSLAGVSIKYL---EDVPKHFKWQSLSIIR 316
Query: 238 NNFSGKLPENLGIVFQKLIYLDVSKNSFEGNIPYSISEMKELITLDLSRNNFSGELPRS- 296
+L L L ++ N G+I + + L LDLSRN S S
Sbjct: 317 CQLKQFPTLDL----PFLKSLTLTMNK--GSISFKKVALPSLSYLDLSRNALSFSGCCSY 370
Query: 297 IFSSCLSLETLDLSNNNFYGQLFPNFMNLTHLSSLRLNNNHFSGKMADGLLSS-TLLDVL 355
SL LDLS N + NFM L L L ++ S L L
Sbjct: 371 SDLGTNSLRHLDLSFNGAII-MSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYL 429
Query: 356 DVSNNKLSGDIPHWIGNFSVLWLLLMSENYLQGSIPVQ-LGNLESLEFIDISENGLS-VS 413
D+S D + L L M+ N + + N +L F+D+S+ L +S
Sbjct: 430 DISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQIS 489
Query: 414 MVSLSNLSSVKHIYLHNNAINGLIPIALLRSSTLLTLDLRDNKFFGRIPHQINELSNLHF 473
L ++ + + +N + L + +L TLD N+ + +L F
Sbjct: 490 WGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIETSKGILQHFPKSLAF 549
Query: 474 LLLRGNSL 481
L NS+
Sbjct: 550 FNLTNNSV 557
|
| >3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606 | Back alignment and structure |
|---|
Score = 151 bits (383), Expect = 6e-40
Identities = 82/445 (18%), Positives = 150/445 (33%), Gaps = 28/445 (6%)
Query: 58 NLLELDLSSNNFEGHLPQCLNNLTHLKVLDISYNQLSGNFPSVLTNLTSLEYLDLSFIDF 117
+ +DLS N + +N + L+ LD+S ++ L L L L+
Sbjct: 33 STKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPI 92
Query: 118 QGTFLINSLANHSKLEVLVLSSGNDMLQVKTENWLPTYPLKVLQLSHCHLNV--NSSFLL 175
Q F S + + LE LV + +++ LK L ++H ++ ++
Sbjct: 93 QS-FSPGSFSGLTSLENLVA-VETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFS 150
Query: 176 HQHHLKFLDLSHNQLVG---NFPTWLLQNNTGLEVLILWNNSFSGILPRLPNAKYDKLRH 232
+ +L +DLS+N + N +L +N L + N I + KL
Sbjct: 151 NLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSLNPIDFIQDQAFQGI--KLHE 208
Query: 233 LDISTNNFSGKLPENLGIVFQKLIYLDVSKNSFEGNIPYSISEMKEL--------ITLDL 284
L + N S + + L + F+ I E + L
Sbjct: 209 LTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRL 268
Query: 285 SRNNFSGELPRSIFSSCLSLETLDLSNNNFYGQLFPNFMNLTHLSSLRLNNNHFSGKMAD 344
+ N + F ++ + L+ + + + SL +
Sbjct: 269 TYTNDFSDDIVK-FHCLANVSAMSLAGVSI--KYLEDVPKHFKWQSLSIIRCQLKQFPTL 325
Query: 345 GLLSSTLLDVLDVSNNKLSGDIPHWIGNFSVLWLLLMSENYLQ--GSIPVQLGNLESLEF 402
L L L ++ NK S I L L +S N L G SL
Sbjct: 326 DLPF---LKSLTLTMNKGS--ISFKKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRH 380
Query: 403 IDISENGLSVSMVSLSNLSSVKHIYLHNNAINGLIPIALLRS-STLLTLDLRDNKFFGRI 461
+D+S NG + + L ++H+ ++ + + + S LL LD+
Sbjct: 381 LDLSFNGAIIMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDF 440
Query: 462 PHQINELSNLHFLLLRGNSLQGRIP 486
L++L+ L + GNS +
Sbjct: 441 DGIFLGLTSLNTLKMAGNSFKDNTL 465
|
| >3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606 | Back alignment and structure |
|---|
Score = 132 bits (335), Expect = 2e-33
Identities = 69/367 (18%), Positives = 116/367 (31%), Gaps = 35/367 (9%)
Query: 2 DSFGSLKQLKILNLGFNFFIDSILPY-LNTLTSLTTLNLRYNKIEGSR--------TKQG 52
D +L L L NF +I+ L L L L + + R +G
Sbjct: 198 DQAFQGIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEG 257
Query: 53 ICNLKNLLELDLSSNNFEGHLPQCLNNLTHLKVLDISYNQLSGNFPSVLT---------- 102
+C++ + E L+ N + L ++ + ++ +
Sbjct: 258 LCDV-TIDEFRLTYTNDFSDDIVKFHCLANVSAMSLAGVSIKYLEDVPKHFKWQSLSIIR 316
Query: 103 ---------NLTSLEYLDLSFIDFQGTFLINSLANHSKLEVLVLSS-GNDMLQVKTENWL 152
+L L+ L L+ + L L LS + + L
Sbjct: 317 CQLKQFPTLDLPFLKSLTLTMNKGS---ISFKKVALPSLSYLDLSRNALSFSGCCSYSDL 373
Query: 153 PTYPLKVLQLSHCHLNVNSSFLLHQHHLKFLDLSHNQLVGNFPTWLLQNNTGLEVLILWN 212
T L+ L LS + S+ + L+ LD H+ L + L L +
Sbjct: 374 GTNSLRHLDLSFNGAIIMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISY 433
Query: 213 NSFSGILPRLPNAKYDKLRHLDISTNNFSGKLPENLGIVFQKLIYLDVSKNSFEGNIPYS 272
+ + L L ++ N+F N+ L +LD+SK E
Sbjct: 434 TNTKIDFDGI-FLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGV 492
Query: 273 ISEMKELITLDLSRNNFSGELPRSIFSSCLSLETLDLSNNNFYGQLFPNFMNLTHLSSLR 332
+ L L++S NN L S ++ SL TLD S N L+
Sbjct: 493 FDTLHRLQLLNMSHNNLLF-LDSSHYNQLYSLSTLDCSFNRIETSKGILQHFPKSLAFFN 551
Query: 333 LNNNHFS 339
L NN +
Sbjct: 552 LTNNSVA 558
|
| >3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606 | Back alignment and structure |
|---|
Score = 94.7 bits (236), Expect = 6e-21
Identities = 50/213 (23%), Positives = 79/213 (37%), Gaps = 11/213 (5%)
Query: 280 ITLDLSRNNFSGELPRSIFSSCLSLETLDLSNNNFYGQLFPNFMNLTHLSSLRLNNNHFS 339
IT S ++P I SS + +DLS N +F N + L L L+
Sbjct: 14 ITYQCMDQKLS-KVPDDIPSS---TKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIE 69
Query: 340 GKMADGLLSSTLLDVLDVSNNKLSGDIPHWIGNFSVLWLLLMSENYLQGSIPVQLGNLES 399
L L ++ N + P + L L+ E L +G L +
Sbjct: 70 TIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLIT 129
Query: 400 LEFIDISENGLSVSMV--SLSNLSSVKHIYLHNNAINGLIPIAL----LRSSTLLTLDLR 453
L+ ++++ N + + SNL+++ H+ L N I + L L+LD+
Sbjct: 130 LKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMS 189
Query: 454 DNKFFGRIPHQINELSNLHFLLLRGNSLQGRIP 486
N I Q + LH L LRGN I
Sbjct: 190 LN-PIDFIQDQAFQGIKLHELTLRGNFNSSNIM 221
|
| >4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876 | Back alignment and structure |
|---|
Score = 175 bits (446), Expect = 1e-47
Identities = 81/478 (16%), Positives = 144/478 (30%), Gaps = 58/478 (12%)
Query: 2 DSFGSLKQLKILNLGFNFFIDSILPYLNTLTSLTTLNLRYNKIEGSRTKQGICNLKNLLE 61
DS SLK +I NL I I + LT L + + + +
Sbjct: 420 DSRISLKDTQIGNL--TNRITFISKAIQRLTKLQIIYFANSPFTY------DNIAVDWED 471
Query: 62 LDLSSNNFEGHLPQCLNNLTHLKVLDISYNQLSGNFPSVLTNLTSLEYLDLSF------- 114
+ + +NL L +++ P L +L L+ L+++
Sbjct: 472 ANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAA 531
Query: 115 -IDFQGTFLINSLANHSKLEVLVLSSGNDMLQVKTENWLPTYP-LKVLQLSHCHLNVNSS 172
+ T L + K+++ + N++ + L L +L H + +
Sbjct: 532 QLKADWTRLADDEDTGPKIQIFYMGY-NNLEEFPASASLQKMVKLGLLDCVHNKVRHLEA 590
Query: 173 FLLHQHHLKFLDLSHNQLVGNFPTWLLQNNTGLEVLILWNNSFSGILPRLPNAKYDKLRH 232
F L L L +NQ+ P +E L +N I +
Sbjct: 591 F-GTNVKLTDLKLDYNQIE-EIPEDFCAFTDQVEGLGFSHNKLKYIPNIFNAKSVYVMGS 648
Query: 233 LDISTNNFSGKLPENLGIVFQKLIYLDVSKNSFEGNIPYSISEMKELITLDLSRNNFSGE 292
+D S N N+ + T+ LS N
Sbjct: 649 VDFSYNKIGS-EGRNIS-------------------CSMDDYKGINASTVTLSYNEIQK- 687
Query: 293 LPRSIFSSCLSLETLDLSNNNF-------YGQLFPNFMNLTHLSSLRLNNNHFSGKMADG 345
P +F++ + T+ LSNN N+ N L+++ L N + D
Sbjct: 688 FPTELFATGSPISTIILSNNLMTSIPENSLKPKDGNYKNTYLLTTIDLRFNKLTSLSDDF 747
Query: 346 LLSS-TLLDVLDVSNNKLSGDIPHWIGNFSVLWLL------LMSENYLQGSIPVQLGNLE 398
++ L +DVS N S P N S L N + P +
Sbjct: 748 RATTLPYLSNMDVSYNCFSS-FPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCP 806
Query: 399 SLEFIDISENGLSVSMVSLSNLSSVKHIYLHNNAINGLIPIALLRSSTLLTLDLRDNK 456
SL + I N + V + + + +N + ++ L +K
Sbjct: 807 SLIQLQIGSNDI--RKVDEKLTPQLYILDIADNPNISIDVTSVCPYIEAGMYVLLYDK 862
|
| >4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876 | Back alignment and structure |
|---|
Score = 165 bits (420), Expect = 3e-44
Identities = 80/519 (15%), Positives = 158/519 (30%), Gaps = 76/519 (14%)
Query: 2 DSFGSLKQLKILNLGFNFFIDSILPYLNTLTSLTTLNLRYNKIEGSRTKQGICNLKNLLE 61
D+ G L +LK+L+ G + S + + + R ++I K + + L
Sbjct: 341 DAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNL 400
Query: 62 LDLSSNNFEGHL---PQCLNNLTHLKVLDI--SYNQLSGNFPSVLTNLTSLEYLDLSFID 116
DL + + P ++ LK I N+++ + LT L+ + +
Sbjct: 401 SDLLQDAINRNPEMKPIKKDSRISLKDTQIGNLTNRITF-ISKAIQRLTKLQIIYFA--- 456
Query: 117 FQGTFLINSLANHSKLEVLVLSSGNDMLQVKTENWLPTYPLKVLQLSHCHLNVNSSFLLH 176
+S ++ + L L
Sbjct: 457 ------------NSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLK------------- 491
Query: 177 QHHLKFLDLSHNQLVGNFPTWLLQNNTGLEVLILWNNSFSGILPRLPNAKY--------D 228
L ++L + + P + L + L+ L + N +
Sbjct: 492 --DLTDVELYNCPNMTQLPDF-LYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGP 548
Query: 229 KLRHLDISTNNFSGKLPENLGIV-FQKLIYLDVSKNSFEGNIPYSISEMKELITLDLSRN 287
K++ + NN P + + KL LD N + +L L L N
Sbjct: 549 KIQIFYMGYNNLEE-FPASASLQKMVKLGLLDCVHNKVR--HLEAFGTNVKLTDLKLDYN 605
Query: 288 NFSGELPRSIFSSCLSLETLDLSNNNFYGQLFPN---FMNLTHLSSLRLNNNHFSGKMAD 344
E+P + +E L S+N PN ++ + S+ + N + +
Sbjct: 606 QIE-EIPEDFCAFTDQVEGLGFSHNKLKY--IPNIFNAKSVYVMGSVDFSYNKIGSEGRN 662
Query: 345 -----GLLSSTLLDVLDVSNNKLSGDIPHWIGNFSVLWLLLMSENYLQ-------GSIPV 392
+ +S N++ S + +++S N +
Sbjct: 663 ISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMTSIPENSLKPKDG 722
Query: 393 QLGNLESLEFIDISENGLSV--SMVSLSNLSSVKHIYLHNNAINGLIPIALLRSSTLLTL 450
N L ID+ N L+ + L + ++ + N + P L SS L
Sbjct: 723 NYKNTYLLTTIDLRFNKLTSLSDDFRATTLPYLSNMDVSYNCFSS-FPTQPLNSSQLKAF 781
Query: 451 DLR------DNKFFGRIPHQINELSNLHFLLLRGNSLQG 483
+R N+ + P I +L L + N ++
Sbjct: 782 GIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSNDIRK 820
|
| >4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876 | Back alignment and structure |
|---|
Score = 157 bits (398), Expect = 2e-41
Identities = 67/505 (13%), Positives = 141/505 (27%), Gaps = 62/505 (12%)
Query: 6 SLKQLKILNLGFNFFIDSILPYLNTLTSLTTLNLRYNKIEGSRTKQGICNLKNLLELDLS 65
+LK + G N+ S + N + G + + N + L L+
Sbjct: 273 ALKAIWEALDGKNWRYYSGTINNTIHSLNWNFNKELDMW-GDQPGVDLDNNGRVTGLSLA 331
Query: 66 SNNFEGHLPQCLNNLTHLKVLDISYNQLSGNFPSVLTNLTSLEYLDLSF-----IDFQGT 120
+G +P + LT LKVL + + + + + + +
Sbjct: 332 GFGAKGRVPDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMF 391
Query: 121 FLINSLANHSKLEVLVLSSGNDMLQVKTENWLPTYPLKVLQLSHCHLNVNSSFLLHQHHL 180
+ N S L ++ +M +K ++ + + + + S + L
Sbjct: 392 LDYDQRLNLSDLLQDAINRNPEMKPIKKDSRISLKDTQ-IGNLTNRITFISKAIQRLTKL 450
Query: 181 KFLDLSHNQLVGNFPTWLLQNNTGLEVLILWNNSFSGILPRLPNAKYDKLRHLDISTNNF 240
+ + +++ E + L +++
Sbjct: 451 QIIYFANSPFTY------DNIAVDWEDANSDYAKQYENEELSWS-NLKDLTDVELYNCPN 503
Query: 241 SGKLPENLGIVFQKLIYLDVSKNSFEG---------NIPYSISEMKELITLDLSRNNFSG 291
+LP+ L +L L+++ N + ++ + NN
Sbjct: 504 MTQLPDFLY-DLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEE 562
Query: 292 ELPRSIFSSCLSLETLDLSNNNFYGQLFPNFMNLTHLSSLRLNNNHFSGKMADGLLSSTL 351
+ + L LD +N + F L+ L+L+ N D +
Sbjct: 563 FPASASLQKMVKLGLLDCVHNKV--RHLEAFGTNVKLTDLKLDYNQIEEIPEDFCAFTDQ 620
Query: 352 LDVLDVSNNKLSGDIPHWIGNFSVLWLLLMSENYLQGSIPVQLGNLESLEFIDISENGLS 411
++ L S+NKL IP+ ++ + +D S N +
Sbjct: 621 VEGLGFSHNKLKY-IPNIFN----------------------AKSVYVMGSVDFSYNKIG 657
Query: 412 V------SMVSLSNLSSVKHIYLHNNAINGLIPIALLRSSTLLTLDLRDNKF-------F 458
+ + + L N I S + T+ L +N
Sbjct: 658 SEGRNISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMTSIPENSL 717
Query: 459 GRIPHQINELSNLHFLLLRGNSLQG 483
L + LR N L
Sbjct: 718 KPKDGNYKNTYLLTTIDLRFNKLTS 742
|
| >3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844 | Back alignment and structure |
|---|
Score = 153 bits (389), Expect = 3e-40
Identities = 108/524 (20%), Positives = 179/524 (34%), Gaps = 51/524 (9%)
Query: 4 FGSLKQLKILNLGFNFFIDSILPY-LNTLTSLTTLNLRYNKIEGSRTKQGICNLKNLLEL 62
L + L L FN+ I ++ L L L L + K+ NL NL L
Sbjct: 20 PQVLNTTERLLLSFNY-IRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRIL 78
Query: 63 DLSSNNFEGHLPQCLNNLTHLKVLDISYNQLSGNF--PSVLTNLTSLEYLDLSFIDFQGT 120
DL S+ P L HL L + + LS NL +L LDLS +
Sbjct: 79 DLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSL 138
Query: 121 FLINSLANHSKLEVLVLSSGN-DMLQVKTENWLPTYPLKVLQLSHCHLN-------VNSS 172
+L S + L+ + SS ++ L L L+ L
Sbjct: 139 YLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCM 198
Query: 173 FLLHQHHLKFLDLSHNQL-----------VGNFPTWLLQNNTGLEVLILWNNSFSGILPR 221
L+ LD+S N + + L + ++
Sbjct: 199 NPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQN 258
Query: 222 -LPNAKYDKLRHLDISTNNFSGKLPENLGIVFQKLIYLDVSKNSFEGNIPYSISEMKELI 280
+RHLD+S L + + L L+++ N + + L
Sbjct: 259 TFAGLARSSVRHLDLSHGFVF-SLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQ 317
Query: 281 TLDLSRNNFSGELPRSIFSSCLSLETLDLSNNNFYGQLFPNFMNLTHLSSLRLNNNHFSG 340
L+LS N EL S F + +DL N+ F L L +L L +N +
Sbjct: 318 VLNLSYNLLG-ELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALTT 376
Query: 341 KMADGLLSSTLLD---------------VLDVSNNKLSG-DIPHWIGNFSVLWLLLMSEN 384
+ L ++ +S N+L DI +++ L +L++++N
Sbjct: 377 IHFIPSIPDIFLSGNKLVTLPKINLTANLIHLSENRLENLDILYFLLRVPHLQILILNQN 436
Query: 385 YLQGSIPVQL-GNLESLEFIDISENGLSVSMVS------LSNLSSVKHIYLHNNAINGLI 437
Q SLE + + EN L ++ + LS ++ +YL++N +N L
Sbjct: 437 RFSSCSGDQTPSENPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHNYLNSLP 496
Query: 438 PIALLRSSTLLTLDLRDNKFFGRIPHQINELSNLHFLLLRGNSL 481
P + L L L N+ + + +NL L + N L
Sbjct: 497 PGVFSHLTALRGLSLNSNRLTVLSHNDL--PANLEILDISRNQL 538
|
| >3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844 | Back alignment and structure |
|---|
Score = 142 bits (360), Expect = 2e-36
Identities = 86/445 (19%), Positives = 161/445 (36%), Gaps = 38/445 (8%)
Query: 62 LDLSSNNFEGHLPQCLNNLTHLKVLDISYNQLSGNFPSVLTNLTSLEYLDLSFIDFQGTF 121
N +PQ LN L +S+N + S L L+ L+L T
Sbjct: 9 AFYRFCNLT-QVPQVLNTTER---LLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTI 64
Query: 122 LINSLANHSKLEVLVLSSGNDMLQVKTENWLPTYPLKVLQLSHCHLN---VNSSFLLHQH 178
+ N L +L L S + + + + + + L L+L C L+ + + +
Sbjct: 65 DKEAFRNLPNLRILDLGS-SKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLK 123
Query: 179 HLKFLDLSHNQLVGNFPTWLLQNNTGLEVLILWNNSFSGILPR-LPNAKYDKLRHLDIST 237
L LDLS NQ+ + L+ + +N + L + L ++
Sbjct: 124 ALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAA 183
Query: 238 NNFSGKLPENLGIVFQK-----LIYLDVSKNSFEGNIP------------YSISEMKELI 280
N+ ++ + G L LDVS N + +I +S+ ++
Sbjct: 184 NSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIM 243
Query: 281 TLDLSRNNFSGELPRSIFSS--CLSLETLDLSNNNFYGQLFPNFMNLTHLSSLRLNNNHF 338
+N + ++ F+ S+ LDLS+ + F L L L L N
Sbjct: 244 GAGFGFHNIK-DPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKI 302
Query: 339 SGKMADGLLSSTLLDVLDVSNNKLSGDIPHWIGNFSVLWLLLMSENYLQGSIPVQLGNLE 398
+ + L VL++S N L + + + +N++ LE
Sbjct: 303 NKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLE 362
Query: 399 SLEFIDISENGLSVSMVSLSNLSSVKHIYLHNNAINGLIPIALLRSSTLLTLDLRDNKFF 458
L+ +D+ +N L+ ++ + S+ I+L N + L I L T + L +N+
Sbjct: 363 KLQTLDLRDNALT----TIHFIPSIPDIFLSGNKLVTLPKINL----TANLIHLSENRLE 414
Query: 459 G-RIPHQINELSNLHFLLLRGNSLQ 482
I + + + +L L+L N
Sbjct: 415 NLDILYFLLRVPHLQILILNQNRFS 439
|
| >3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844 | Back alignment and structure |
|---|
Score = 141 bits (358), Expect = 3e-36
Identities = 105/490 (21%), Positives = 174/490 (35%), Gaps = 55/490 (11%)
Query: 2 DSFGSLKQLKILNLGFNFFIDSILP--YLNTLTSLTTLNLRYNKIEGSRTKQGICNLKNL 59
D+F L L L L F D++L Y L +LT L+L N+I L +L
Sbjct: 91 DAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSL 150
Query: 60 LELDLSSNNFEGHLPQCLNNLT--HLKVLDISYNQLSGNFPSVLTNL------TSLEYLD 111
+D SSN L L L ++ N L LE LD
Sbjct: 151 KSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILD 210
Query: 112 LS-----------FIDFQGTFLINSLANHSKLEVLVLSSGN-DMLQVKTENWLPTYPLKV 159
+S F + SL + N T L ++
Sbjct: 211 VSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRH 270
Query: 160 LQLSHCHL-NVNSSFLLHQHHLKFLDLSHNQLVGNFPTWLLQNNTGLEVLILWNNSFSGI 218
L LSH + ++NS LK L+L++N++ L+VL L N +
Sbjct: 271 LDLSHGFVFSLNSRVFETLKDLKVLNLAYNKIN-KIADEAFYGLDNLQVLNLSYNLLGEL 329
Query: 219 LPR----LPNAKYDKLRHLDISTNNFSGKLPENLGIVFQKLIYLDVSKNSFEGNIPYSIS 274
LP + ++D+ N+ + + + +KL LD+ N+ +I
Sbjct: 330 YSSNFYGLPK-----VAYIDLQKNHIA-IIQDQTFKFLEKLQTLDLRDNALT-----TIH 378
Query: 275 EMKELITLDLSRNNFSGELPRSIFSSCLSLETLDLSNNNFYG-QLFPNFMNLTHLSSLRL 333
+ + + LS N ++ L+ + LS N + + + HL L L
Sbjct: 379 FIPSIPDIFLSGNKLV-----TLPKINLTANLIHLSENRLENLDILYFLLRVPHLQILIL 433
Query: 334 NNNHFSGKMADGLLSS-TLLDVLDVSNNKLSGDIPHWI-----GNFSVLWLLLMSENYLQ 387
N N FS D S L+ L + N L + S L +L ++ NYL
Sbjct: 434 NQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHNYLN 493
Query: 388 GSIPVQLGNLESLEFIDISENGLSVSMVSLSNLSSVKHIYLHNNAINGLIPIALLRSSTL 447
P +L +L + ++ N L+ + ++++ + + N + P +L
Sbjct: 494 SLPPGVFSHLTALRGLSLNSNRLT-VLSHNDLPANLEILDISRNQLLAPNPDVF---VSL 549
Query: 448 LTLDLRDNKF 457
LD+ NKF
Sbjct: 550 SVLDITHNKF 559
|
| >3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844 | Back alignment and structure |
|---|
Score = 125 bits (315), Expect = 1e-30
Identities = 80/408 (19%), Positives = 147/408 (36%), Gaps = 31/408 (7%)
Query: 84 KVLDISYNQLSGNFPSVLTNLTSLEYLDLSFIDFQGTFLINSLANHSKLEVLVLSSGNDM 143
++ + L+ V L + E L LSF + T +S +L++L L S
Sbjct: 7 RIAFYRFCNLT----QVPQVLNTTERLLLSFNYIR-TVTASSFPFLEQLQLLELGSQYTP 61
Query: 144 LQVKTENWLPTYPLKVLQLSHCHL-NVNSSFLLHQHHLKFLDLSHNQL-VGNFPTWLLQN 201
L + E + L++L L + ++ HL L L L +N
Sbjct: 62 LTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRN 121
Query: 202 NTGLEVLILWNNSFSGILPRLPNAKYDKLRHLDISTNNFSGKLPENL-GIVFQKLIYLDV 260
L L L N + K + L+ +D S+N L + + L + +
Sbjct: 122 LKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSL 181
Query: 261 SKNSFEGNIPYSISEMKE------LITLDLSRNNFSGELPRSIFSSCLSLETLDLSNNNF 314
+ NS + + L LD+S N ++ ++ + ++ + L +
Sbjct: 182 AANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHH 241
Query: 315 YGQLFPNFMNLTHLSSLRLNNNHFSGKMADGLLSSTLLDVLDVSNNKLSGDIPHWIGNFS 374
F N+ N F+G L+ + + LD+S+ +
Sbjct: 242 IMGAGFGFHNIKDPD-----QNTFAG------LARSSVRHLDLSHGFVFSLNSRVFETLK 290
Query: 375 VLWLLLMSENYLQGSIPVQLGNLESLEFIDISENGLS-VSMVSLSNLSSVKHIYLHNNAI 433
L +L ++ N + L++L+ +++S N L + + L V +I L N I
Sbjct: 291 DLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHI 350
Query: 434 NGLIPIALLRSSTLLTLDLRDNKFFGRIPHQINELSNLHFLLLRGNSL 481
+ L TLDLRDN I+ + ++ + L GN L
Sbjct: 351 AIIQDQTFKFLEKLQTLDLRDNAL-----TTIHFIPSIPDIFLSGNKL 393
|
| >3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844 | Back alignment and structure |
|---|
Score = 116 bits (292), Expect = 9e-28
Identities = 77/343 (22%), Positives = 125/343 (36%), Gaps = 23/343 (6%)
Query: 3 SFGSLKQLKILNLGFNFFIDSILPYLNTL--TSLTTLNLRYNKIEGSRTKQGICNLKNLL 60
S + GF+ D L +S+ L+L + + ++ LK+L
Sbjct: 235 SLILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRV-FETLKDLK 293
Query: 61 ELDLSSNNFEGHLPQCLNNLTHLKVLDISYNQLSGNFPSVLTNLTSLEYLDLSFIDFQGT 120
L+L+ N + L +L+VL++SYN L + S L + Y+DL
Sbjct: 294 VLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIA-I 352
Query: 121 FLINSLANHSKLEVLVLSSGNDMLQVKTENWLPTYPLKVLQLSHCHLNVNSSFLLHQHHL 180
+ KL+ L L N + + +P + LS L L
Sbjct: 353 IQDQTFKFLEKLQTLDLRD-NALTTIHFIPSIPD-----IFLSGNKLVTLPKINL---TA 403
Query: 181 KFLDLSHNQLVGNFPTWLLQNNTGLEVLILWNNSFSGILPRLPNAKYDKLRHLDISTNNF 240
+ LS N+L + L L++LIL N FS ++ L L + N
Sbjct: 404 NLIHLSENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGENML 463
Query: 241 SG----KLPENLGIVFQKLIYLDVSKNSFEGNIPYSISEMKELITLDLSRNNFSGELPRS 296
+L ++ L L ++ N P S + L L L+ N + L +
Sbjct: 464 QLAWETELCWDVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLT-VLSHN 522
Query: 297 IFSSCLSLETLDLSNNNFYGQLFPNFMNLTHLSSLRLNNNHFS 339
+ +LE LD+S N L PN LS L + +N F
Sbjct: 523 DLPA--NLEILDISRNQL---LAPNPDVFVSLSVLDITHNKFI 560
|
| >2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570 | Back alignment and structure |
|---|
Score = 149 bits (377), Expect = 2e-39
Identities = 97/464 (20%), Positives = 169/464 (36%), Gaps = 35/464 (7%)
Query: 2 DSFGSLKQLKILNLGFNFFIDSILPYLNTLTSLTTLNLRYNKIEGSRTKQGICNLKNLLE 61
+F L L+ L + L +L LN+ +N I+ + + NL NL
Sbjct: 94 GAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEH 153
Query: 62 LDLSSNNFEGHLPQCLNNLTHLKV----LDISYNQLSGNFPSVLTNLTSLEYLDLSFIDF 117
LDLSSN + L L + + LD+S N ++ P + L L L
Sbjct: 154 LDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEI-RLHKLTLRNNFD 212
Query: 118 QGTFLINSLANHSKLEVLVLSSGNDMLQVKTENWLPTYPLKVLQLSHCHLNVNSSFLLHQ 177
+ + + LEV L G + + E L + L+ L
Sbjct: 213 SLNVMKTCIQGLAGLEVHRLVLG----EFRNEGNLEKFDKSALE------------GLCN 256
Query: 178 HHLKFLDLSHNQLVGNFPTWLLQNNTGLEVLILWNNSFSGILPRLPNAKYDKLRHLDIST 237
++ L++ + L T + L + + + N + L ++
Sbjct: 257 LTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVNCKF 316
Query: 238 NNFSGKLPENLGIVFQKLIYLDVSKNSFEGNIPYSISEMKELITLDLSRNNFSG-ELPRS 296
F + + L L + N G +S ++ L LDLSRN S
Sbjct: 317 GQFP-------TLKLKSLKRLTFTSNK--GGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQ 367
Query: 297 IFSSCLSLETLDLSNNNFYGQLFPNFMNLTHLSSLRLNNNHFSGKMADGLLSS-TLLDVL 355
SL+ LDLS N + NF+ L L L +++ + S L L
Sbjct: 368 SDFGTTSLKYLDLSFNGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYL 426
Query: 356 DVSNNKLSGDIPHWIGNFSVLWLLLMSENYLQGSIPVQ-LGNLESLEFIDISENGL-SVS 413
D+S+ S L +L M+ N Q + L +L F+D+S+ L +S
Sbjct: 427 DISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLS 486
Query: 414 MVSLSNLSSVKHIYLHNNAINGLIPIALLRSSTLLTLDLRDNKF 457
+ ++LSS++ + + +N + + R ++L + L N +
Sbjct: 487 PTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTNPW 530
|
| >2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570 | Back alignment and structure |
|---|
Score = 147 bits (373), Expect = 7e-39
Identities = 93/505 (18%), Positives = 167/505 (33%), Gaps = 35/505 (6%)
Query: 10 LKILNLGFNFFIDSILPYLNTLTSLTTLNLRYNKIEGSRTKQGICNLKNLLELDLSSNNF 69
K L+L FN + L L+L +I+ +L +L L L+ N
Sbjct: 30 TKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIE-DGAYQSLSHLSTLILTGNPI 88
Query: 70 EGHLPQCLNNLTHLKVLDISYNQLSGNFPSVLTNLTSLEYLDLSFIDFQGTFLINSLANH 129
+ + L+ L+ L L+ + +L +L+ L+++ Q L +N
Sbjct: 89 QSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNL 148
Query: 130 SKLEVLVLSSGNDMLQVKTENWLP----TYPLKVLQLSHCHLNVNSSFLLHQHHLKFLDL 185
+ LE L L S N + + + L LS +N + L L L
Sbjct: 149 TNLEHLDL-SSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLTL 207
Query: 186 SHNQLVGNFPTWLLQNNTGLEVLILWNNSFSGI-------LPRLPNAKYDKLRHLDISTN 238
+N N +Q GLEV L F L + ++
Sbjct: 208 RNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYL 267
Query: 239 NFSGKLPENLGIVFQKLIYLDVSKNSFEGNIPYSI-SEMKELITLDLSRNNFSGELPRSI 297
++ +L + + + E +S + L ++ F +S+
Sbjct: 268 DYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQFPTLKLKSL 327
Query: 298 ---------------FSSCLSLETLDLSNNNFYGQLFPN--FMNLTHLSSLRLNNNHFSG 340
SLE LDLS N + + T L L L+ N
Sbjct: 328 KRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVI- 386
Query: 341 KMADGLLSSTLLDVLDVSNNKLSGDIPHWI-GNFSVLWLLLMSENYLQGSIPVQLGNLES 399
M+ L L+ LD ++ L + + L L +S + + + L S
Sbjct: 387 TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSS 446
Query: 400 LEFIDISENGL--SVSMVSLSNLSSVKHIYLHNNAINGLIPIALLRSSTLLTLDLRDNKF 457
LE + ++ N + + L ++ + L + L P A S+L L++ N+
Sbjct: 447 LEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQL 506
Query: 458 FGRIPHQINELSNLHFLLLRGNSLQ 482
+ L++L + L N
Sbjct: 507 KSVPDGIFDRLTSLQKIWLHTNPWD 531
|
| >2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570 | Back alignment and structure |
|---|
Score = 119 bits (300), Expect = 4e-29
Identities = 84/400 (21%), Positives = 139/400 (34%), Gaps = 39/400 (9%)
Query: 2 DSFGSLKQLKILNLGFNFFIDSILPYLNTLTSLT----TLNLRYNKIEGSRTKQGICNLK 57
+ F +L L+ L+L N L L + +L+L N + + + G
Sbjct: 143 EYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPM--NFIQPGAFKEI 200
Query: 58 NLLELDLSSNNFEGHLPQ-CLNNLTHLKVLDI------SYNQLSGNFPSVLTNLTSL--E 108
L +L L +N ++ + C+ L L+V + + L S L L +L E
Sbjct: 201 RLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIE 260
Query: 109 YLDLSFIDFQGTFLINSLANHSKLEVLVLS----------SGNDMLQVKTENWLPTYP-- 156
L+++D+ +I+ + + L S N Q
Sbjct: 261 EFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQFP 320
Query: 157 ------LKVLQLSHCHLNVNSSFLLHQHHLKFLDLSHNQL-VGNFPTWLLQNNTGLEVLI 209
LK L + S + L+FLDLS N L + T L+ L
Sbjct: 321 TLKLKSLKRLTFTSNKGGNAFSEV-DLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLD 379
Query: 210 LWNNSFSGILPRLPNAKYDKLRHLDISTNNFSGKLPENLGIVFQKLIYLDVSKNSFEGNI 269
L N + + +L HLD +N ++ + + LIYLD+S
Sbjct: 380 LSFNGVITMSSNFLGLE--QLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAF 437
Query: 270 PYSISEMKELITLDLSRNNFSGELPRSIFSSCLSLETLDLSNNNFYGQLFPN-FMNLTHL 328
+ + L L ++ N+F IF+ +L LDLS QL P F +L+ L
Sbjct: 438 NGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQL-EQLSPTAFNSLSSL 496
Query: 329 SSLRLNNNHFSGKMADGLLSSTLLDVLDVSNNKLSGDIPH 368
L + +N T L + + N P
Sbjct: 497 QVLNMASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPR 536
|
| >2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570 | Back alignment and structure |
|---|
Score = 117 bits (296), Expect = 2e-28
Identities = 94/473 (19%), Positives = 168/473 (35%), Gaps = 51/473 (10%)
Query: 53 ICNLKNLLELDLSSNNFEGHLPQCLNNLTHLKVLDISYNQLSGNFPSVLTNLTSLEYLDL 112
+ + N+ NF +P L K LD+S+N L + L+ LDL
Sbjct: 4 VEVVPNI-TYQCMELNFY-KIPDNLP--FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDL 59
Query: 113 SFIDFQGTFLINSLANHSKLEVLVLSSGNDMLQVKTENWLPTYPLKVLQLSHCHL-NVNS 171
S + Q T + + S L L+L +GN + + + L+ L +L ++ +
Sbjct: 60 SRCEIQ-TIEDGAYQSLSHLSTLIL-TGNPIQSLALGAFSGLSSLQKLVAVETNLASLEN 117
Query: 172 SFLLHQHHLKFLDLSHNQLVGNFPTWLLQNNTGLEVLILWNNSFSGI-------LPRLPN 224
+ H LK L+++HN + N T LE L L +N I L ++P
Sbjct: 118 FPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPL 177
Query: 225 AKYD-------------------KLRHLDISTNNFSGKLPENLGIVFQKLIYLDVSKNSF 265
+L L + N S + + L + F
Sbjct: 178 LNLSLDLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEF 237
Query: 266 EGN---IPYSISEMKELITL-----DLSRNNFSGELPRSIFSSCLSLETLDLSNNNFYGQ 317
+ S ++ L L L+ ++ + +F+ ++ + L + +
Sbjct: 238 RNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTI--E 295
Query: 318 LFPNFMNLTHLSSLRLNNNHFSGKMADGLLSSTLLDVLDVSNNKLSGDIPHWIGNFSVLW 377
+F L L N F L S L L ++NK + + S+ +
Sbjct: 296 RVKDFSYNFGWQHLELVNCKFGQFPTLKLKS---LKRLTFTSNKGG-NAFSEVDLPSLEF 351
Query: 378 LLLMSENYLQ--GSIPVQLGNLESLEFIDISENGLSVSMVSLSNLSSVKHIYLHNNAING 435
L L S N L G SL+++D+S NG+ + L ++H+ ++ +
Sbjct: 352 LDL-SRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQ 410
Query: 436 LIPIALLRSST-LLTLDLRDNKFFGRIPHQINELSNLHFLLLRGNSLQGRIPN 487
+ ++ S L+ LD+ N LS+L L + GNS Q
Sbjct: 411 MSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLP 463
|
| >2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570 | Back alignment and structure |
|---|
Score = 79.8 bits (197), Expect = 4e-16
Identities = 55/223 (24%), Positives = 85/223 (38%), Gaps = 8/223 (3%)
Query: 3 SFGSLKQLKILNLGFNFFIDSILPYLNTLTSLTTLNLRYNKIEG-SRTKQGICNLKNLLE 61
LK LK L N + L SL L+L N + Q +L
Sbjct: 320 PTLKLKSLKRLTFTSNKGGN--AFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKY 377
Query: 62 LDLSSNNFEGHLPQCLNNLTHLKVLDISYNQLSGNFP-SVLTNLTSLEYLDLSFIDFQGT 120
LDLS N + L L+ LD ++ L SV +L +L YLD+S +
Sbjct: 378 LDLSFNGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTR-V 435
Query: 121 FLINSLANHSKLEVLVLSSGNDMLQVKTENWLPTYPLKVLQLSHCHLN-VNSSFLLHQHH 179
S LEVL ++ + + + L L LS C L ++ +
Sbjct: 436 AFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSS 495
Query: 180 LKFLDLSHNQLVGNFPTWLLQNNTGLEVLILWNNSFSGILPRL 222
L+ L+++ NQL + P + T L+ + L N + PR+
Sbjct: 496 LQVLNMASNQLK-SVPDGIFDRLTSLQKIWLHTNPWDCSCPRI 537
|
| >2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549 | Back alignment and structure |
|---|
Score = 143 bits (363), Expect = 2e-37
Identities = 97/495 (19%), Positives = 174/495 (35%), Gaps = 34/495 (6%)
Query: 10 LKILNLGFNFFIDSILPYLNTLTSLTTLNLRYNKIEGSRTKQGICNLKNLLELDLSSNNF 69
+K L+L FN L +L L L+ ++I +L +L LDLS N+
Sbjct: 28 MKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDA-FYSLGSLEHLDLSDNHL 86
Query: 70 EGHLPQCLNNLTHLKVLDISYNQLSG-NFPSVLTNLTSLEYLDLSFIDFQGTFLINSLAN 128
L+ LK L++ N S+ NLT+L+ L + ++ A
Sbjct: 87 SSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAG 146
Query: 129 HSKLEVLVLSSGNDMLQVKTENWLPTYPLKVLQLSHCHLNVNSSFLL-HQHHLKFLDLSH 187
+ L L + + ++++ + L L +++L+L
Sbjct: 147 LTSLNELEI-KALSLRNYQSQSLKSIRDIHHLTLHLSESAFLLEIFADILSSVRYLELRD 205
Query: 188 NQLVGNFPTWLLQ-------NNTGLEVLILWNNSFSGILPRLPNAKYDKLRHLDISTNNF 240
L + L +L + SF+ +L L D T N
Sbjct: 206 TNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDCTLNG 265
Query: 241 SGKLPENLGIVFQKLI--------YLDVSKNSFEGNIPYSISEMKELITLDLSRNNFSGE 292
G + V +L L + + ++ S ++++ + + +
Sbjct: 266 LGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVF-L 324
Query: 293 LPRSIFSSCLSLETLDLSNNNFYGQLFPN---FMNLTHLSSLRLNNNHFS--GKMADGLL 347
+P S SLE LDLS N + N L +L L+ NH K + LL
Sbjct: 325 VPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILL 384
Query: 348 SSTLLDVLDVSNNKLSGDIPHWIGNFSVLWLLLMSENYLQGSIPVQLGNLESLEFIDISE 407
+ L LD+S N + +L L S ++ V+ ++LE +D+S
Sbjct: 385 TLKNLTSLDISRNTFHPMPDSCQWPEKMRFLNL-SSTGIRV---VKTCIPQTLEVLDVSN 440
Query: 408 NGLSVSMVSLSNLSSVKHIYLHNNAINGLIPIALLRSSTLLTLDLRDNKFFGRIPHQINE 467
N L + L L + +Y+ N + L +L LL + + N+ +
Sbjct: 441 NNLDSFSLFLPRL---QELYISRNKLKTLPDASLFPV--LLVMKISRNQLKSVPDGIFDR 495
Query: 468 LSNLHFLLLRGNSLQ 482
L++L + L N
Sbjct: 496 LTSLQKIWLHTNPWD 510
|
| >2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549 | Back alignment and structure |
|---|
Score = 115 bits (289), Expect = 1e-27
Identities = 75/433 (17%), Positives = 140/433 (32%), Gaps = 44/433 (10%)
Query: 58 NLLELDLSSNNFEGHLPQCLNNLTHLKVLDISYNQLSGNFPSVLTNLTSLEYLDLSFIDF 117
+ LDLS N L +L+VL + ++++ +L SLE+LDLS
Sbjct: 27 AMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSD--- 83
Query: 118 QGTFLINSLANHSKLEVLVLSSGNDMLQVKTENWLPTYPLKVLQLSHCHLNV--NSSFLL 175
N L++ S LSS LK L L +S
Sbjct: 84 ------NHLSSLSSSWFGPLSS-----------------LKYLNLMGNPYQTLGVTSLFP 120
Query: 176 HQHHLKFLDLSHNQLVGNFPTWLLQNNTGLEVLILWNNSFSGILPRLPNAKYDKLRHLDI 235
+ +L+ L + + + T L L + S + + + HL +
Sbjct: 121 NLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIR-DIHHLTL 179
Query: 236 STNNFSGKLPENLGIVFQKLIYLDVSKNSFEGNIPYSISEMKELITLDLSRNNFSGELPR 295
+ + L E + + YL++ + + + + L
Sbjct: 180 HLSESA-FLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFR-GSVLTD 237
Query: 296 SIFSSCLSLETLDLSNNNFYGQLFPNFMNLTHLSSLRLNNNHFSGKMADGLLSSTLLDVL 355
F+ L L L + F + T N + G + + + L
Sbjct: 238 ESFNELLKLLRYILELSEV------EFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRL 291
Query: 356 DVSNNKLSGDIPHWIGNFSVLWLLLMSENYLQGSIPVQLGNLESLEFIDISENGLS---- 411
+ L D+ + + + + + +L+SLEF+D+SEN +
Sbjct: 292 HIPQFYLFYDLSTVYSLLEKVKRITVENSKVFLVPCSFSQHLKSLEFLDLSENLMVEEYL 351
Query: 412 VSMVSLSNLSSVKHIYLHNNAINGL--IPIALLRSSTLLTLDLRDNKFFGRIPHQINELS 469
+ S++ + L N + + LL L +LD+ N F +P
Sbjct: 352 KNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNT-FHPMPDSCQWPE 410
Query: 470 NLHFLLLRGNSLQ 482
+ FL L ++
Sbjct: 411 KMRFLNLSSTGIR 423
|
| >2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549 | Back alignment and structure |
|---|
Score = 89.8 bits (223), Expect = 2e-19
Identities = 61/354 (17%), Positives = 123/354 (34%), Gaps = 49/354 (13%)
Query: 2 DSFGSLKQLKILNLGFNFFIDSILPYLNTLTSLTTLNLRYNKIEG--SRTKQGICNLKNL 59
S S++ + L L + + + + L+S+ L LR + +
Sbjct: 166 QSLKSIRDIHHLTLHLSESAFLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPM 225
Query: 60 LELDLSSNNFEG-------HLPQCLNNLTHLKVLDISYNQL---SGNFPSVLTNLTSLEY 109
+L + L + + L+ ++ D + N L + + V++ L +E
Sbjct: 226 KKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVET 285
Query: 110 LDLSFIDFQGTFLI----NSLANHSKLEVLVLSSGNDMLQVKTENWLPTYPLKVLQLSHC 165
+ + + +L + K++ + + + + V L+ L LS
Sbjct: 286 VTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVE-NSKVFLVPCSFSQHLKSLEFLDLSEN 344
Query: 166 HLN----VNSSFLLHQHHLKFLDLSHNQLVG-NFPTWLLQNNTGLEVLILWNNSFSGILP 220
+ NS+ L+ L LS N L +L L L + N+F +
Sbjct: 345 LMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFHPMPD 404
Query: 221 RLPNAKYDKLRHLDISTNNFSGKLPENLGIVFQKLIYLDVSKNSFEGNIPYSISEMKELI 280
+ K+R L++S+ + + Q L LDVS N+ + + + ++EL
Sbjct: 405 SCQWPE--KMRFLNLSSTGIR-VVKTCI---PQTLEVLDVSNNNLD-SFSLFLPRLQELY 457
Query: 281 -------------------TLDLSRNNFSGELPRSIFSSCLSLETLDLSNNNFY 315
+ +SRN +P IF SL+ + L N +
Sbjct: 458 ISRNKLKTLPDASLFPVLLVMKISRNQLK-SVPDGIFDRLTSLQKIWLHTNPWD 510
|
| >2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549 | Back alignment and structure |
|---|
Score = 75.1 bits (185), Expect = 1e-14
Identities = 42/206 (20%), Positives = 83/206 (40%), Gaps = 7/206 (3%)
Query: 281 TLDLSRNNFSGELPRSIFSSCLSLETLDLSNNNFYGQLFPNFMNLTHLSSLRLNNNHFSG 340
D +F+ +P + ++ +++LDLS N + +L L L ++ +
Sbjct: 9 VCDGRSRSFT-SIPSGLTAA---MKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINT 64
Query: 341 KMADGLLSSTLLDVLDVSNNKLSGDIPHWIGNFSVLWLLLMSENYLQG-SIPVQLGNLES 399
D S L+ LD+S+N LS W G S L L + N Q + NL +
Sbjct: 65 IEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTN 124
Query: 400 LEFIDISENGL--SVSMVSLSNLSSVKHIYLHNNAINGLIPIALLRSSTLLTLDLRDNKF 457
L+ + I + + + L+S+ + + ++ +L + L L ++
Sbjct: 125 LQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSES 184
Query: 458 FGRIPHQINELSNLHFLLLRGNSLQG 483
+ + LS++ +L LR +L
Sbjct: 185 AFLLEIFADILSSVRYLELRDTNLAR 210
|
| >2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549 | Back alignment and structure |
|---|
Score = 42.4 bits (100), Expect = 3e-04
Identities = 25/136 (18%), Positives = 54/136 (39%), Gaps = 5/136 (3%)
Query: 354 VLDVSNNKLSGDIPHWIGNFSVLWLLLMSENYLQGSIPVQLGNLESLEFIDISENGLS-V 412
V D + + IP + + + L +S N + L +L+ + + + ++ +
Sbjct: 9 VCDGRSRSFT-SIPSGL--TAAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTI 65
Query: 413 SMVSLSNLSSVKHIYLHNNAINGLIPIALLRSSTLLTLDLRDNKFFG-RIPHQINELSNL 471
+ +L S++H+ L +N ++ L S+L L+L N + + L+NL
Sbjct: 66 EGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNL 125
Query: 472 HFLLLRGNSLQGRIPN 487
L + I
Sbjct: 126 QTLRIGNVETFSEIRR 141
|
| >1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466 | Back alignment and structure |
|---|
Score = 128 bits (325), Expect = 9e-33
Identities = 108/449 (24%), Positives = 174/449 (38%), Gaps = 40/449 (8%)
Query: 3 SFGSLKQLKILNLGFNFFIDSILPYLNTLTSLTTLNLRYNKIEGSRTKQGICNLKNLLEL 62
+ +L + LG D L +TTL I+ + G+ L NL ++
Sbjct: 19 TDTALAEKMKTVLGKTNVTD--TVSQTDLDQVTTLQADRLGIK---SIDGVEYLNNLTQI 73
Query: 63 DLSSNNFEGHLPQCLNNLTHLKVLDISYNQLSGNFPSVLTNLTSLEYLDLSFIDFQGTFL 122
+ S+N P L NLT L + ++ NQ++ + L NLT+L L L
Sbjct: 74 NFSNNQLTDITP--LKNLTKLVDILMNNNQIAD--ITPLANLTNLTGLTLFNNQITD--- 126
Query: 123 INSLANHSKLEVLVLSSGNDMLQVKTENWLPTYPLKVLQLSHCHLNVNSSFLLHQHHLKF 182
I+ L N + L L LSS N + + + L + L+ L + ++ L + L+
Sbjct: 127 IDPLKNLTNLNRLELSS-NTISDISALSGLTS--LQQLSFGNQVTDLKP--LANLTTLER 181
Query: 183 LDLSHNQLVGNFPTWLLQNNTGLEVLILWNNSFSGILPRLPNAKYDKLRHLDISTNNFSG 242
LD+S N++ L T LE LI NN S I P L L L ++ N
Sbjct: 182 LDISSNKVSDISV---LAKLTNLESLIATNNQISDITP-LGILT--NLDELSLNGNQLKD 235
Query: 243 KLPENLGIVFQKLIYLDVSKNSFEGNIPYSISEMKELITLDLSRNNFSGELPRSIFSSCL 302
L L LD++ N P +S + +L L L N S P +
Sbjct: 236 --IGTLA-SLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISP---LAGLT 287
Query: 303 SLETLDLSNNNFYGQLFPNFMNLTHLSSLRLNNNHFSGKMADGLLSSTLLDVLDVSNNKL 362
+L L+L+ N NL +L+ L L N+ S + S T L L NNK+
Sbjct: 288 ALTNLELNENQLED--ISPISNLKNLTYLTLYFNNISD--ISPVSSLTKLQRLFFYNNKV 343
Query: 363 SGDIPHWIGNFSVLWLLLMSENYLQGSIPVQLGNLESLEFIDISENGLS-VSMVSLSNLS 421
S + N + + L N + P L NL + + +++ + + +N+S
Sbjct: 344 SD--VSSLANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQAWTNAPVNYKANVS 399
Query: 422 SVKHIYLHNNAINGLIPIALLRSSTLLTL 450
+ A+ I+ S T +
Sbjct: 400 IPNTVKNVTGALIAPATISDGGSYTEPDI 428
|
| >1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466 | Back alignment and structure |
|---|
Score = 127 bits (321), Expect = 3e-32
Identities = 102/477 (21%), Positives = 168/477 (35%), Gaps = 66/477 (13%)
Query: 5 GSLKQLKILNLGFNFFIDSILPYLNTLTSLTTLNLRYNKIEGSRTKQGICNLKNLLELDL 64
G L I + I+ I L L + + + +L + L
Sbjct: 1 GPLGSATITQ---DTPINQIFT-DTALAEKMKTVLGKTNVTDTVS---QTDLDQVTTLQA 53
Query: 65 SSNNFEGHLPQCLNNLTHLKVLDISYNQLSGNFPSVLTNLTSLEYLDLSFIDFQGTFLIN 124
+ + L +L ++ S NQL+ + L NLT L + ++ N
Sbjct: 54 DRLGIKS--IDGVEYLNNLTQINFSNNQLTD--ITPLKNLTKLVDILMNN---------N 100
Query: 125 SLANHSKLEVLVLSSGNDMLQVKTENWLPTYPLKVLQLSHCHLNVNSSFLLHQHHLKFLD 184
+A+ + L L L L L + + + L + +L L+
Sbjct: 101 QIADITPLANLTN-------------------LTGLTLFNNQIT-DIDPLKNLTNLNRLE 140
Query: 185 LSHNQLVGNFPTWLLQNNTGLEVLILWNNSFSGILPRLPNAKYDKLRHLDISTNNFSGKL 244
LS N + L T L+ L N + P A L LDIS+N S
Sbjct: 141 LSSNTISDISA---LSGLTSLQQLSFGNQ----VTDLKPLANLTTLERLDISSNKVSD-- 191
Query: 245 PENLGIVFQKLIYLDVSKNSFEGNIPYSISEMKELITLDLSRNNFSGELPRSIFSSCLSL 304
L L L + N P + + L L L+ N +S +L
Sbjct: 192 ISVLA-KLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLKDI---GTLASLTNL 245
Query: 305 ETLDLSNNNFYGQLFPNFMNLTHLSSLRLNNNHFSGKMADGLLSSTLLDVLDVSNNKLSG 364
LDL+NN LT L+ L+L N S L T L L+++ N+L
Sbjct: 246 TDLDLANNQISN--LAPLSGLTKLTELKLGANQISN--ISPLAGLTALTNLELNENQLED 301
Query: 365 DIPHWIGNFSVLWLLLMSENYLQGSIPVQLGNLESLEFIDISENGLSVSMVSLSNLSSVK 424
P I N L L + N + P + +L L+ + N +S + SL+NL+++
Sbjct: 302 ISP--ISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFYNNKVS-DVSSLANLTNIN 356
Query: 425 HIYLHNNAINGLIPIALLRSSTLLTLDLRDNKFFGRIPHQINELSNLHFLLLRGNSL 481
+ +N I+ L P+A L + L L D + + +S + + +L
Sbjct: 357 WLSAGHNQISDLTPLANLTR--ITQLGLNDQAWTNAPVNYKANVSIPNTVKNVTGAL 411
|
| >1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466 | Back alignment and structure |
|---|
Score = 127 bits (321), Expect = 3e-32
Identities = 105/463 (22%), Positives = 180/463 (38%), Gaps = 45/463 (9%)
Query: 3 SFGSLKQLKILNLGFNFFIDSILPYLNTLTSLTTLNLRYNKIEGSRTKQGICNLKNLLEL 62
S L Q+ L + + L +LT +N N++ + NL L+++
Sbjct: 41 SQTDLDQVTTLQADRLGI--KSIDGVEYLNNLTQINFSNNQLTDI---TPLKNLTKLVDI 95
Query: 63 DLSSNNFEGHLPQCLNNLTHLKVLDISYNQLSGNFPSVLTNLTSLEYLDLSFIDFQGTFL 122
+++N P L NLT+L L + NQ++ L NLT+L L+LS
Sbjct: 96 LMNNNQIADITP--LANLTNLTGLTLFNNQITD--IDPLKNLTNLNRLELSSNTISD--- 148
Query: 123 INSLANHSKLEVLVLSSGNDMLQVKTENWLPTYPLKVLQLSHCHLNVNSSFLLHQHHLKF 182
I++L+ + L+ L N + +K L T L+ L +S ++ + S L +L+
Sbjct: 149 ISALSGLTSLQQLSFG--NQVTDLKPLANLTT--LERLDISSNKVS-DISVLAKLTNLES 203
Query: 183 LDLSHNQLVGNFPTWLLQNNTGLEVLILWNNSFSGI--LPRLPNAKYDKLRHLDISTNNF 240
L ++NQ+ P L T L+ L L N I L L N L LD++ N
Sbjct: 204 LIATNNQISDITP---LGILTNLDELSLNGNQLKDIGTLASLTN-----LTDLDLANNQI 255
Query: 241 SGKLP-ENLGIVFQKLIYLDVSKNSFEGNIPYSISEMKELITLDLSRNNFSGELPRSIFS 299
S P L KL L + N P ++ + L L+L+ N P S
Sbjct: 256 SNLAPLSGL----TKLTELKLGANQISNISP--LAGLTALTNLELNENQLEDISP---IS 306
Query: 300 SCLSLETLDLSNNNFYGQLFPNFMNLTHLSSLRLNNNHFSGKMADGLLSSTLLDVLDVSN 359
+ +L L L NN +LT L L NN S L + T ++ L +
Sbjct: 307 NLKNLTYLTLYFNNISD--ISPVSSLTKLQRLFFYNNKVSD--VSSLANLTNINWLSAGH 362
Query: 360 NKLSGDIPHWIGNFSVLWLLLMSENYLQGSIPVQLGNLESLEFIDISENGLSVSMVSLSN 419
N++S P + N + + L +++ + N+ + + G ++ ++S+
Sbjct: 363 NQISDLTP--LANLTRITQLGLNDQAWTNAPVNYKANVSIPNTV-KNVTGALIAPATISD 419
Query: 420 LSSVKHIYLHNNAINGLIPIALLRSSTLLTLDLRDNKFFGRIP 462
S + N + S +T+ F G +
Sbjct: 420 GGSYTEPDITWNLPSYT-NEVSYTFSQPVTIGKGTTTFSGTVT 461
|
| >1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466 | Back alignment and structure |
|---|
Score = 126 bits (318), Expect = 9e-32
Identities = 109/411 (26%), Positives = 164/411 (39%), Gaps = 39/411 (9%)
Query: 2 DSFGSLKQLKILNLGFNFFIDSILPYLNTLTSLTTLNLRYNKIEGSRTKQGICNLKNLLE 61
D L L +N N D + L LT L + + N+I + NL NL
Sbjct: 62 DGVEYLNNLTQINFSNNQLTD--ITPLKNLTKLVDILMNNNQIADI---TPLANLTNLTG 116
Query: 62 LDLSSNNFEGHLPQCLNNLTHLKVLDISYNQLSGNFPSVLTNLTSLEYLDLSFIDFQGTF 121
L L +N P L NLT+L L++S N +S S L+ LTSL+ L
Sbjct: 117 LTLFNNQITDIDP--LKNLTNLNRLELSSNTISD--ISALSGLTSLQQLSFGNQVTD--- 169
Query: 122 LINSLANHSKLEVLVLSSGNDMLQVKTENWLPTYPLKVLQLSHCHLNVNSSFLLHQHHLK 181
+ LAN + LE L +SS N + + L L+ L ++ ++ + + L +L
Sbjct: 170 -LKPLANLTTLERLDISS-NKVSDISVLAKLTN--LESLIATNNQIS-DITPLGILTNLD 224
Query: 182 FLDLSHNQLVGNFPTWLLQNNTGLEVLILWNNSFSGILPRLPNAKYDKLRHLDISTNNFS 241
L L+ NQL L + T L L L NN S + P + KL L + N S
Sbjct: 225 ELSLNGNQLKDIGT---LASLTNLTDLDLANNQISNLAPL---SGLTKLTELKLGANQIS 278
Query: 242 GKLP-ENLGIVFQKLIYLDVSKNSFEGNIPYSISEMKELITLDLSRNNFSGELPRSIFSS 300
P L L L++++N E P IS +K L L L NN S P SS
Sbjct: 279 NISPLAGL----TALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDISP---VSS 329
Query: 301 CLSLETLDLSNNNFYGQLFPNFMNLTHLSSLRLNNNHFSGKMADGLLSSTLLDVLDVSNN 360
L+ L NN + NLT+++ L +N S L+ + L +++
Sbjct: 330 LTKLQRLFFYNNKVSD--VSSLANLTNINWLSAGHNQISDLTPLANLTR--ITQLGLNDQ 385
Query: 361 KLSGDIPHWIGNFSVLWLLLMSENYLQGSIPVQLGNLESLEFIDISENGLS 411
+ ++ N S+ + L P + + S DI+ N S
Sbjct: 386 AWTNAPVNYKANVSIPNTVKNVTGAL--IAPATISDGGSYTEPDITWNLPS 434
|
| >1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466 | Back alignment and structure |
|---|
Score = 116 bits (294), Expect = 1e-28
Identities = 86/433 (19%), Positives = 164/433 (37%), Gaps = 61/433 (14%)
Query: 55 NLKNLLELDLSSNNFEGHLPQCLNNLTHLKVLDISYNQLSGNFPSVLTNLTSLEYLDLSF 114
L ++ L N + +L + L + + L +L ++ S
Sbjct: 22 ALAEKMKTVLGKTNVTDTVS--QTDLDQVTTLQADRLGIKS--IDGVEYLNNLTQINFSN 77
Query: 115 IDFQGTFLINSLANHSKLEVLVLSSGNDMLQVKTENWLPTYPLKVLQLSHCHLNVNSSFL 174
N L + + L+ L L + +++ + + + L
Sbjct: 78 ---------NQLTDITPLKNLTK-------------------LVDILMNNNQIA-DITPL 108
Query: 175 LHQHHLKFLDLSHNQLVGNFPTWLLQNNTGLEVLILWNNSFSGILPRLPNAKYDKLRHLD 234
+ +L L L +NQ+ P L+N T L L L +N+ S I + L+ L
Sbjct: 109 ANLTNLTGLTLFNNQITDIDP---LKNLTNLNRLELSSNTISDISA---LSGLTSLQQLS 162
Query: 235 ISTNNFSGKLPENLGIVFQKLIYLDVSKNSFEGNIPYSISEMKELITLDLSRNNFSGELP 294
K NL L LD+S N ++++ L +L + N S P
Sbjct: 163 FGNQVTDLKPLANL----TTLERLDISSNKVSD--ISVLAKLTNLESLIATNNQISDITP 216
Query: 295 RSIFSSCLSLETLDLSNNNFYGQLFPNFMNLTHLSSLRLNNNHFSGKMADGLLSSTLLDV 354
+L+ L L+ N +LT+L+ L L NN S L+ L
Sbjct: 217 ---LGILTNLDELSLNGNQLKD--IGTLASLTNLTDLDLANNQISNLAPLSGLTK--LTE 269
Query: 355 LDVSNNKLSGDIPHWIGNFSVLWLLLMSENYLQGSIPVQLGNLESLEFIDISENGLSVSM 414
L + N++S P + + L L ++EN L+ P + NL++L ++ + N +S +
Sbjct: 270 LKLGANQISNISP--LAGLTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNIS-DI 324
Query: 415 VSLSNLSSVKHIYLHNNAINGLIPIALLRSSTLLTLDLRDNKFFGRIPHQINELSNLHFL 474
+S+L+ ++ ++ +NN ++ + +A L + + L N+ P + L+ + L
Sbjct: 325 SPVSSLTKLQRLFFYNNKVSDVSSLANLTN--INWLSAGHNQISDLTP--LANLTRITQL 380
Query: 475 LLRGNSLQGRIPN 487
L + N
Sbjct: 381 GLNDQAWTNAPVN 393
|
| >1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466 | Back alignment and structure |
|---|
Score = 108 bits (272), Expect = 1e-25
Identities = 89/428 (20%), Positives = 158/428 (36%), Gaps = 60/428 (14%)
Query: 59 LLELDLSSNNFEGHLPQCLNNLTHLKVLDISYNQLSGNFPSVLTNLTSLEYLDLSFIDFQ 118
L ++ + + L + ++ T+L + L + +
Sbjct: 3 LGSATITQDTPINQIFT-DTALAEKMKTVLGKTNVTDTVS--QTDLDQVTTLQADRLGIK 59
Query: 119 GTFLINSLANHSKLEVLVLSSGNDMLQVKTENWLPTYPLKVLQLSHCHLNVNSSFLLHQH 178
+ L N L + S+ L + + L +
Sbjct: 60 SIDGVEYLNN----------------------------LTQINFSNNQLT-DITPLKNLT 90
Query: 179 HLKFLDLSHNQLVGNFPTWLLQNNTGLEVLILWNNSFSGILPRLPNAKYDKLRHLDISTN 238
L + +++NQ+ P L N T L L L+NN + I P L L++S+N
Sbjct: 91 KLVDILMNNNQIADITP---LANLTNLTGLTLFNNQITDIDP---LKNLTNLNRLELSSN 144
Query: 239 NFSGKLPENLGIVFQKLIYLDVSKNSFEGNIPYSISEMKELITLDLSRNNFSGELPRSIF 298
S L L L + ++ + L LD+S N S S+
Sbjct: 145 TISD--ISALS-GLTSLQQLSFGNQVTD---LKPLANLTTLERLDISSNKVSDI---SVL 195
Query: 299 SSCLSLETLDLSNNNFYGQLFPNFMNLTHLSSLRLNNNHFSGKMADGLLSSTLLDVLDVS 358
+ +LE+L +NN LT+L L LN N L S T L LD++
Sbjct: 196 AKLTNLESLIATNNQISD--ITPLGILTNLDELSLNGNQLKD--IGTLASLTNLTDLDLA 251
Query: 359 NNKLSGDIPHWIGNFSVLWLLLMSENYLQGSIPVQLGNLESLEFIDISENGLSVSMVSLS 418
NN++S P + + L L + N + P L L +L ++++EN L + +S
Sbjct: 252 NNQISNLAP--LSGLTKLTELKLGANQISNISP--LAGLTALTNLELNENQLE-DISPIS 306
Query: 419 NLSSVKHIYLHNNAINGLIPIALLRSSTLLTLDLRDNKFFGRIPHQINELSNLHFLLLRG 478
NL ++ ++ L+ N I+ + P++ L L L +NK + L+N+++L
Sbjct: 307 NLKNLTYLTLYFNNISDISPVSSLTK--LQRLFFYNNKV--SDVSSLANLTNINWLSAGH 362
Query: 479 NSLQGRIP 486
N + P
Sbjct: 363 NQISDLTP 370
|
| >1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466 | Back alignment and structure |
|---|
Score = 85.0 bits (211), Expect = 7e-18
Identities = 64/296 (21%), Positives = 116/296 (39%), Gaps = 24/296 (8%)
Query: 2 DSFGSLKQLKILNLGFNFFIDSILPYLNTLTSLTTLNLRYNKIEGSRTKQGICNLKNLLE 61
L L+ L N D + L LT+L L+L N+++ + +L NL +
Sbjct: 193 SVLAKLTNLESLIATNNQISD--ITPLGILTNLDELSLNGNQLKDI---GTLASLTNLTD 247
Query: 62 LDLSSNNFEGHLPQCLNNLTHLKVLDISYNQLSGNFPSVLTNLTSLEYLDLSFIDFQGTF 121
LDL++N P L+ LT L L + NQ+S S L LT+L L+L+ +
Sbjct: 248 LDLANNQISNLAP--LSGLTKLTELKLGANQISN--ISPLAGLTALTNLELNENQLED-- 301
Query: 122 LINSLANHSKLEVLVLSSGNDMLQVKTENWLPTYPLKVLQLSHCHLNVNSSFLLHQHHLK 181
I+ ++N L L L N++ + + L L+ L + ++ + S L + ++
Sbjct: 302 -ISPISNLKNLTYLTLY-FNNISDISPVSSLTK--LQRLFFYNNKVS-DVSSLANLTNIN 356
Query: 182 FLDLSHNQLVGNFPTWLLQNNTGLEVLILWNNSFSGILPRLPNAKYDKLRHLDISTNNFS 241
+L HNQ+ P L N T + L L + +++ P + + N
Sbjct: 357 WLSAGHNQISDLTP---LANLTRITQLGLNDQAWTNA----PVNYKANVSIPNTVKNVTG 409
Query: 242 GKLPENLGIVFQKLIYLDVSKNSFEGNIPYSISEMKELITLDLSRNNFSGELPRSI 297
+ D++ N + +T+ FSG + + +
Sbjct: 410 ALIAPATISDGGSYTEPDITWNLPSYT-NEVSYTFSQPVTIGKGTTTFSGTVTQPL 464
|
| >4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347 | Back alignment and structure |
|---|
Score = 119 bits (301), Expect = 3e-30
Identities = 85/361 (23%), Positives = 151/361 (41%), Gaps = 37/361 (10%)
Query: 6 SLKQLKILNLGFNFFIDSILPYLNTLTSLTTLNLRYNKIEGSRTKQGICNLKNLLELDLS 65
L + L D + L S+T L + K+ + QGI L NL L+L+
Sbjct: 20 DLAEGIRAVLQKASVTD--VVTQEELESITKLVVAGEKVA---SIQGIEYLTNLEYLNLN 74
Query: 66 SNNFEGHLPQCLNNLTHLKVLDISYNQLSGNFPSVLTNLTSLEYLDLSFIDFQGTFLINS 125
N P L+NL L L I N+++ S L NLT+L L L+ + I+
Sbjct: 75 GNQITDISP--LSNLVKLTNLYIGTNKITD--ISALQNLTNLRELYLNEDNISD---ISP 127
Query: 126 LANHSKLEVLVLSSGNDMLQVKTENWLPTYPLKVLQLSHCHLNVNSSFLLHQHHLKFLDL 185
LAN +K+ L L + +++ + + + L L ++ + + + + + L L L
Sbjct: 128 LANLTKMYSLNLGANHNLSDLSPLSNMTG--LNYLTVTESKVK-DVTPIANLTDLYSLSL 184
Query: 186 SHNQLVGNFPTWLLQNNTGLEVLILWNNSFSGI--LPRLPNAKYDKLRHLDISTNNFSGK 243
++NQ+ P L + T L + N + I + + L L I N +
Sbjct: 185 NYNQIEDISP---LASLTSLHYFTAYVNQITDITPVANMTR-----LNSLKIGNNKITDL 236
Query: 244 LP-ENLGIVFQKLIYLDVSKNSFEGNIPYSISEMKELITLDLSRNNFSGELPRSIFSSCL 302
P NL +L +L++ N ++ ++ +L L++ N S S+ ++
Sbjct: 237 SPLANL----SQLTWLEIGTNQISD--INAVKDLTKLKMLNVGSNQISDI---SVLNNLS 287
Query: 303 SLETLDLSNNNFYGQLFPNFMNLTHLSSLRLNNNHFSGKMADGLLSSTLLDVLDVSNNKL 362
L +L L+NN + LT+L++L L+ NH + LS +D D +N +
Sbjct: 288 QLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRPLASLSK--MDSADFANQVI 345
Query: 363 S 363
Sbjct: 346 K 346
|
| >4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347 | Back alignment and structure |
|---|
Score = 108 bits (271), Expect = 4e-26
Identities = 71/327 (21%), Positives = 130/327 (39%), Gaps = 25/327 (7%)
Query: 157 LKVLQLSHCHLNVNSSFLLHQHHLKFLDLSHNQLVGNFPTWLLQNNTGLEVLILWNNSFS 216
L + + + L ++ ++ ++ T LE L L N +
Sbjct: 24 GIRAVLQKASVT-DVVTQEELESITKLVVAGEKVASIQG---IEYLTNLEYLNLNGNQIT 79
Query: 217 GILPRLPNAKYDKLRHLDISTNNFSGKLPENLGIVFQKLIYLDVSKNSFEGNIPYSISEM 276
I P + KL +L I TN + L L L +++++ P ++ +
Sbjct: 80 DISP---LSNLVKLTNLYIGTNKITD--ISALQ-NLTNLRELYLNEDNISDISP--LANL 131
Query: 277 KELITLDLSRNNFSGELPRSIFSSCLSLETLDLSNNNFYGQLFPNFMNLTHLSSLRLNNN 336
++ +L+L N+ +L S S+ L L ++ + NLT L SL LN N
Sbjct: 132 TKMYSLNLGANHNLSDL--SPLSNMTGLNYLTVTESKVKD--VTPIANLTDLYSLSLNYN 187
Query: 337 HFSGKMADGLLSSTLLDVLDVSNNKLSGDIPHWIGNFSVLWLLLMSENYLQGSIPVQLGN 396
L S T L N+++ P + N + L L + N + P L N
Sbjct: 188 QIED--ISPLASLTSLHYFTAYVNQITDITP--VANMTRLNSLKIGNNKITDLSP--LAN 241
Query: 397 LESLEFIDISENGLSVSMVSLSNLSSVKHIYLHNNAINGLIPIALLRSSTLLTLDLRDNK 456
L L +++I N +S + ++ +L+ +K + + +N I+ + + L L +L L +N+
Sbjct: 242 LSQLTWLEIGTNQIS-DINAVKDLTKLKMLNVGSNQISDISVLNNLSQ--LNSLFLNNNQ 298
Query: 457 FFGRIPHQINELSNLHFLLLRGNSLQG 483
I L+NL L L N +
Sbjct: 299 LGNEDMEVIGGLTNLTTLFLSQNHITD 325
|
| >4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347 | Back alignment and structure |
|---|
Score = 107 bits (270), Expect = 5e-26
Identities = 74/312 (23%), Positives = 127/312 (40%), Gaps = 27/312 (8%)
Query: 2 DSFGSLKQLKILNLGFNFFIDSILPYLNTLTSLTTLNLRYNKIEGSRTKQGICNLKNLLE 61
L L+ LNL N + + L+ L LT L + NKI + NL NL E
Sbjct: 60 QGIEYLTNLEYLNLNGNQI--TDISPLSNLVKLTNLYIGTNKITDI---SALQNLTNLRE 114
Query: 62 LDLSSNNFEGHLPQCLNNLTHLKVLDISYNQLSGNFPSVLTNLTSLEYLDLSFIDFQGTF 121
L L+ +N L NLT + L++ N + S L+N+T L YL ++ +
Sbjct: 115 LYLNEDNISD--ISPLANLTKMYSLNLGANHNLSD-LSPLSNMTGLNYLTVTESKVKD-- 169
Query: 122 LINSLANHSKLEVLVLSSGNDMLQVKTENWLPTYPLKVLQLSHCHLNVNSSFLLHQHHLK 181
+ +AN + L L L+ N + + L + L + + + + + L
Sbjct: 170 -VTPIANLTDLYSLSLNY-NQIEDISPLASLTS--LHYFTAYVNQIT-DITPVANMTRLN 224
Query: 182 FLDLSHNQLVGNFPTWLLQNNTGLEVLILWNNSFSGILPRLPNAKYDKLRHLDISTNNFS 241
L + +N++ P L N + L L + N S I + + KL+ L++ +N S
Sbjct: 225 SLKIGNNKITDLSP---LANLSQLTWLEIGTNQISDI-NAVKDLT--KLKMLNVGSNQIS 278
Query: 242 GKLPENLGIVFQKLIYLDVSKNSFEGNIPYSISEMKELITLDLSRNNFSGELPRSIFSSC 301
L +L L ++ N I + L TL LS+N+ + P +S
Sbjct: 279 D--ISVLN-NLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRP---LASL 332
Query: 302 LSLETLDLSNNN 313
+++ D +N
Sbjct: 333 SKMDSADFANQV 344
|
| >4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347 | Back alignment and structure |
|---|
Score = 104 bits (263), Expect = 5e-25
Identities = 76/362 (20%), Positives = 144/362 (39%), Gaps = 32/362 (8%)
Query: 123 INSLANHSKLEVLVLSSGNDMLQVKTENWLPTYPLKVLQLSHCHLNVNSSFLLHQHHLKF 182
I A+ ++ VL + V T+ L + + L ++ + + + + +L++
Sbjct: 15 IFPDADLAEGIRAVLQK-ASVTDVVTQEELES--ITKLVVAGEKVA-SIQGIEYLTNLEY 70
Query: 183 LDLSHNQLVGNFPTWLLQNNTGLEVLILWNNSFSGI--LPRLPNAKYDKLRHLDISTNNF 240
L+L+ NQ+ P L N L L + N + I L L N LR L ++ +N
Sbjct: 71 LNLNGNQITDISP---LSNLVKLTNLYIGTNKITDISALQNLTN-----LRELYLNEDNI 122
Query: 241 SGKLPENLGIVFQKLIYLDVSKNSFEGNIPYSISEMKELITLDLSRNNFSGELPRSIFSS 300
S L K+ L++ N ++ +S M L L ++ + P ++
Sbjct: 123 SD--ISPLAN-LTKMYSLNLGANHNLSDLS-PLSNMTGLNYLTVTESKVKDVTP---IAN 175
Query: 301 CLSLETLDLSNNNFYGQLFPNFMNLTHLSSLRLNNNHFSGKMADGLLSSTLLDVLDVSNN 360
L +L L+ N +LT L N + + + T L+ L + NN
Sbjct: 176 LTDLYSLSLNYNQIED--ISPLASLTSLHYFTAYVNQITD--ITPVANMTRLNSLKIGNN 231
Query: 361 KLSGDIPHWIGNFSVLWLLLMSENYLQGSIPVQLGNLESLEFIDISENGLSVSMVSLSNL 420
K++ P + N S L L + N + + +L L+ +++ N +S + L+NL
Sbjct: 232 KITDLSP--LANLSQLTWLEIGTNQISDINA--VKDLTKLKMLNVGSNQIS-DISVLNNL 286
Query: 421 SSVKHIYLHNNAINGLIPIALLRSSTLLTLDLRDNKFFGRIPHQINELSNLHFLLLRGNS 480
S + ++L+NN + + + L TL L N P + LS +
Sbjct: 287 SQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRP--LASLSKMDSADFANQV 344
Query: 481 LQ 482
++
Sbjct: 345 IK 346
|
| >4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347 | Back alignment and structure |
|---|
Score = 93.8 bits (234), Expect = 3e-21
Identities = 59/333 (17%), Positives = 116/333 (34%), Gaps = 31/333 (9%)
Query: 157 LKVLQLSHCHLNVNSSFLLHQHHLKFLDLSHNQLVGNFPTWLLQNNTGLEVLILWNNSFS 216
L +N L + + + L++ +
Sbjct: 2 AATLATLPAPIN-QIFPDADLAEGIRAVLQKASVTDVVT---QEELESITKLVVAGEKVA 57
Query: 217 GI--LPRLPNAKYDKLRHLDISTNNFSGKLPENLGIVFQKLIYLDVSKNSFEGNIPYSIS 274
I + L N L +L+++ N + L KL L + N ++
Sbjct: 58 SIQGIEYLTN-----LEYLNLNGNQITD--ISPLS-NLVKLTNLYIGTNKIT--DISALQ 107
Query: 275 EMKELITLDLSRNNFSGELPRSIFSSCLSLETLDLSNNNFYGQLFPNFMNLTHLSSLRLN 334
+ L L L+ +N S P ++ + +L+L N+ L N+T L+ L +
Sbjct: 108 NLTNLRELYLNEDNISDISP---LANLTKMYSLNLGANHNLSDL-SPLSNMTGLNYLTVT 163
Query: 335 NNHFSGKMADGLLSSTLLDVLDVSNNKLSGDIPHWIGNFSVLWLLLMSENYLQGSIPVQL 394
+ + + T L L ++ N++ P + + + L N + P +
Sbjct: 164 ESKVKD--VTPIANLTDLYSLSLNYNQIEDISP--LASLTSLHYFTAYVNQITDITP--V 217
Query: 395 GNLESLEFIDISENGLSVSMVSLSNLSSVKHIYLHNNAINGLIPIALLRSSTLLTLDLRD 454
N+ L + I N ++ + L+NLS + + + N I+ + + L L L++
Sbjct: 218 ANMTRLNSLKIGNNKIT-DLSPLANLSQLTWLEIGTNQISDINAVKDLTK--LKMLNVGS 274
Query: 455 NKFFGRIPHQINELSNLHFLLLRGNSLQGRIPN 487
N+ +N LS L+ L L N L
Sbjct: 275 NQI--SDISVLNNLSQLNSLFLNNNQLGNEDME 305
|
| >4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347 | Back alignment and structure |
|---|
Score = 86.1 bits (214), Expect = 1e-18
Identities = 61/240 (25%), Positives = 98/240 (40%), Gaps = 19/240 (7%)
Query: 2 DSFGSLKQLKILNLGFNFFIDSILPYLNTLTSLTTLNLRYNKIEGSRTKQGICNLKNLLE 61
+L ++ LNLG N + S L L+ +T L L + +K++ I NL +L
Sbjct: 126 SPLANLTKMYSLNLGANHNL-SDLSPLSNMTGLNYLTVTESKVKDV---TPIANLTDLYS 181
Query: 62 LDLSSNNFEGHLPQCLNNLTHLKVLDISYNQLSGNFPSVLTNLTSLEYLDLSFIDFQGTF 121
L L+ N E P L +LT L NQ++ + + N+T L L +
Sbjct: 182 LSLNYNQIEDISP--LASLTSLHYFTAYVNQITD--ITPVANMTRLNSLKIGNNKITD-- 235
Query: 122 LINSLANHSKLEVLVLSSGNDMLQVKTENWLPTYPLKVLQLSHCHLNVNSSFLLHQHHLK 181
++ LAN S+L L + N + + L LK+L + ++ + S L + L
Sbjct: 236 -LSPLANLSQLTWLEI-GTNQISDINAVKDLTK--LKMLNVGSNQIS-DISVLNNLSQLN 290
Query: 182 FLDLSHNQLVGNFPTWLLQNNTGLEVLILWNNSFSGILPRLPNAKYDKLRHLDISTNNFS 241
L L++NQL + T L L L N + I P A K+ D +
Sbjct: 291 SLFLNNNQLGNEDMEV-IGGLTNLTTLFLSQNHITDIRPL---ASLSKMDSADFANQVIK 346
|
| >2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477 | Back alignment and structure |
|---|
Score = 114 bits (286), Expect = 1e-27
Identities = 63/303 (20%), Positives = 104/303 (34%), Gaps = 6/303 (1%)
Query: 157 LKVLQLSHCHL-NVNSSFLLHQHHLKFLDLSHNQLVGNFPTWLLQNNTGLEVLILWNNSF 215
++L L + +N HL+ L+L+ N + N L L L +N
Sbjct: 34 TRLLDLGKNRIKTLNQDEFASFPHLEELELNENIV-SAVEPGAFNNLFNLRTLGLRSNRL 92
Query: 216 SGILPRLPNAKYDKLRHLDISTNNFSGKLPENLGIVFQKLIYLDVSKNSFEGNIPYSISE 275
I + L LDIS N L + + L L+V N + S
Sbjct: 93 KLIPLGVF-TGLSNLTKLDISENKIV-ILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSG 150
Query: 276 MKELITLDLSRNNFSGELPRSIFSSCLSLETLDLSNNNFYGQLFPNFMNLTHLSSLRLNN 335
+ L L L + N + +P S L L L + N +F L L L +++
Sbjct: 151 LNSLEQLTLEKCNLT-SIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISH 209
Query: 336 NHFSGKMADGLLSSTLLDVLDVSNNKLSGDIPHWIGNFSVLWLLLMSENYLQGSIPVQLG 395
+ M L L L +++ L+ + + L L +S N + L
Sbjct: 210 WPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTIEGSMLH 269
Query: 396 NLESLEFIDISENGL-SVSMVSLSNLSSVKHIYLHNNAINGLIPIALLRSSTLLTLDLRD 454
L L+ I + L V + L+ ++ + + N + L L TL L
Sbjct: 270 ELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLETLILDS 329
Query: 455 NKF 457
N
Sbjct: 330 NPL 332
|
| >2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477 | Back alignment and structure |
|---|
Score = 114 bits (286), Expect = 1e-27
Identities = 79/315 (25%), Positives = 132/315 (41%), Gaps = 34/315 (10%)
Query: 2 DSFGSLKQLKILNLGFNFFIDSILPY-LNTLTSLTTLNLRYNKIEGSRTKQGICNLKNLL 60
D F S L+ L L N + ++ P N L +L TL LR N+++ L NL
Sbjct: 50 DEFASFPHLEELELNENI-VSAVEPGAFNNLFNLRTLGLRSNRLK-LIPLGVFTGLSNLT 107
Query: 61 ELDLSSNNFEGHLPQCLNNLTHLKVLDISYNQLSGNFPSVLTNLTSLEYLDLSFIDFQGT 120
+LD+S N L +L +LK L++ N L + L SLE L L + +
Sbjct: 108 KLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLT-S 166
Query: 121 FLINSLANHSKLEVLVLSSGNDMLQVKTENWLPTYPLKVLQLSH-CHLNVNSSFLLHQHH 179
+L++ L VL L ++ ++ ++ Y LKVL++SH +L+ + L+ +
Sbjct: 167 IPTEALSHLHGLIVLRLRH-LNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLN 225
Query: 180 LKFLDLSHNQLVGNFPTWLLQNNTGLEVLILWNNSFSGILPRLPNAKYDKLRHLDISTNN 239
L L ++H L P +++ L L L N S I + + +L+ + +
Sbjct: 226 LTSLSITHCNLT-AVPYLAVRHLVYLRFLNLSYNPISTIEGSM-LHELLRLQEIQLVGGQ 283
Query: 240 FSGKLPENLGIVFQKLIYLDVSKNSFEGNIPYSISEMKELITLDLSRNNFSGELPRSIFS 299
+ V +F G + L L++S N + L S+F
Sbjct: 284 LA-----------------VVEPYAFRG--------LNYLRVLNVSGNQLT-TLEESVFH 317
Query: 300 SCLSLETLDLSNNNF 314
S +LETL L +N
Sbjct: 318 SVGNLETLILDSNPL 332
|
| >2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477 | Back alignment and structure |
|---|
Score = 112 bits (282), Expect = 5e-27
Identities = 70/312 (22%), Positives = 126/312 (40%), Gaps = 14/312 (4%)
Query: 32 TSLTTLNLRYNKIEGSRTKQGICNLKNLLELDLSSNNFEGHLPQCLNNLTHLKVLDISYN 91
T L+L N+I+ + + + +L EL+L+ N P NNL +L+ L + N
Sbjct: 32 TETRLLDLGKNRIK-TLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSN 90
Query: 92 QLSGNFPSVLTNLTSLEYLDLSFIDFQGTFLINSLANHSKLEVLVLSSGNDMLQVKTENW 151
+L V T L++L LD+S L + L+ L + ND++ + +
Sbjct: 91 RLKLIPLGVFTGLSNLTKLDISENKIV-ILLDYMFQDLYNLKSLEV-GDNDLVYISHRAF 148
Query: 152 LPTYPLKVLQLSHCHL-NVNSSFLLHQHHLKFLDLSHNQLVGNFPTWLLQNNTGLEVLIL 210
L+ L L C+L ++ + L H H L L L H + + + L+VL +
Sbjct: 149 SGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNIN-AIRDYSFKRLYRLKVLEI 207
Query: 211 WNNSFSGILPRLPNAKYD-KLRHLDISTNNFSGKLPENLGIVFQKLIYLDVSKNSFEGNI 269
+ + + PN Y L L I+ N + +P L +L++S N
Sbjct: 208 SHWPYLDTMT--PNCLYGLNLTSLSITHCNLT-AVPYLAVRHLVYLRFLNLSYNPISTIE 264
Query: 270 PYSISEMKELITLDLSRNNFSGELPRSIFSSCLSLETLDLSNNNFYGQLFPN--FMNLTH 327
+ E+ L + L + + F L L++S N F ++ +
Sbjct: 265 GSMLHELLRLQEIQLVGGQLA-VVEPYAFRGLNYLRVLNVSGNQL--TTLEESVFHSVGN 321
Query: 328 LSSLRLNNNHFS 339
L +L L++N +
Sbjct: 322 LETLILDSNPLA 333
|
| >2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477 | Back alignment and structure |
|---|
Score = 92.5 bits (230), Expect = 2e-20
Identities = 50/208 (24%), Positives = 86/208 (41%), Gaps = 6/208 (2%)
Query: 278 ELITLDLSRNNFSGELPRSIFSSCLSLETLDLSNNNFYGQLFPN-FMNLTHLSSLRLNNN 336
E LDL +N L + F+S LE L+L+ N + P F NL +L +L L +N
Sbjct: 33 ETRLLDLGKNRIK-TLNQDEFASFPHLEELELNENIV-SAVEPGAFNNLFNLRTLGLRSN 90
Query: 337 HFSGKMADGLLSSTLLDVLDVSNNKLSGDIPHWIGNFSVLWLLLMSENYLQGSIPVQ-LG 395
+ L LD+S NK+ + + + L L + +N L I +
Sbjct: 91 RLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLV-YISHRAFS 149
Query: 396 NLESLEFIDISENGLS-VSMVSLSNLSSVKHIYLHNNAINGLIPIALLRSSTLLTLDLRD 454
L SLE + + + L+ + +LS+L + + L + IN + + R L L++
Sbjct: 150 GLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISH 209
Query: 455 NKFFGRIPHQINELSNLHFLLLRGNSLQ 482
+ + NL L + +L
Sbjct: 210 WPYLDTMTPNCLYGLNLTSLSITHCNLT 237
|
| >2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477 | Back alignment and structure |
|---|
Score = 45.5 bits (108), Expect = 3e-05
Identities = 22/95 (23%), Positives = 39/95 (41%), Gaps = 3/95 (3%)
Query: 1 YDSFGSLKQLKILNLGFNFFIDSILPY-LNTLTSLTTLNLRYNKIEGSRTKQGICNLKNL 59
Y + L L+ LNL +N I +I L+ L L + L ++ L L
Sbjct: 241 YLAVRHLVYLRFLNLSYNP-ISTIEGSMLHELLRLQEIQLVGGQLA-VVEPYAFRGLNYL 298
Query: 60 LELDLSSNNFEGHLPQCLNNLTHLKVLDISYNQLS 94
L++S N +++ +L+ L + N L+
Sbjct: 299 RVLNVSGNQLTTLEESVFHSVGNLETLILDSNPLA 333
|
| >3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487 | Back alignment and structure |
|---|
Score = 109 bits (275), Expect = 4e-26
Identities = 64/411 (15%), Positives = 127/411 (30%), Gaps = 32/411 (7%)
Query: 55 NLKNLLELDLSSNNFEGHLPQCLNNLTHLKVLDISYNQLSGNFPSVLTNLTSLEYLDLSF 114
N ++ ++ + L + ++K LD+S N LS + L T LE L+LS
Sbjct: 8 NGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSS 67
Query: 115 IDFQGTFLINSLANHSKLEVLVLSSGNDMLQVKTENWLPTYP----LKVLQLSHCHLNVN 170
L + S L L L++ N++ ++ L ++ +++
Sbjct: 68 NVLYE---TLDLESLSTLRTLDLNN----------NYVQELLVGPSIETLHAANNNISRV 114
Query: 171 SSFLLHQHHLKFLDLSHNQLVGNFPTWLLQNNTGLEVLILWNNSFSGILPRLPNAKYDKL 230
S K + L++N++ + ++ L L N + A D L
Sbjct: 115 SCSRGQG--KKNIYLANNKIT-MLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTL 171
Query: 231 RHLDISTNNFSGKLPENLGIVFQKLIYLDVSKNSFEGNIPYSISEMKELITLDLSRNNFS 290
HL++ N + +VF KL LD+S N + + + L N
Sbjct: 172 EHLNLQYNFIY-DVKG--QVVFAKLKTLDLSSNKLA-FMGPEFQSAAGVTWISLRNNKLV 227
Query: 291 GELPRSIFSSCLSLETLDLSNNNFYGQLFPNFMNLTHLSSLRLNNNHFSGKMADGLLSST 350
+ ++ +LE DL N F+ +F + + T
Sbjct: 228 -LIEKA-LRFSQNLEHFDLRGNGFHCGTLRDFF-SKNQRVQTVAKQTVKKLTGQNEEECT 284
Query: 351 LLDVLDVSNNKLSGDIPHWIGNFSVLWLLLMSENYLQGS----IPVQLGNLESLEFIDIS 406
+ + + L + QGS + + N ID
Sbjct: 285 VPTLGHYGAYCCEDLPAPFADRLIALKRKEHALLSGQGSETERLECERENQARQREIDAL 344
Query: 407 ENGL-SVSMVSLSNLSSVKHIYLHNNAINGLIPIALLRSSTLLTLDLRDNK 456
+ +V + + A++ + + L +
Sbjct: 345 KEQYRTVIDQVTLRKQAKITLEQKKKALDEQVSNGRRAHAELDGTLQQAVG 395
|
| >3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487 | Back alignment and structure |
|---|
Score = 108 bits (271), Expect = 1e-25
Identities = 69/452 (15%), Positives = 145/452 (32%), Gaps = 52/452 (11%)
Query: 2 DSFGSLKQLKILNLGFNFFIDSILPYLNTLTSLTTLNLRYNKIEGSRTKQGICNLKNLLE 61
+ + + KI + + ++ + ++ L+L N + + L
Sbjct: 4 EIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAAD-LAPFTKLEL 62
Query: 62 LDLSSNNFEGHLPQCLNNLTHLKVLDISYNQLSGNFPSVLTNLTSLEYLDLSFIDFQGTF 121
L+LSSN L L +L+ L+ LD++ N + L S+E L +
Sbjct: 63 LNLSSNVLYETLD--LESLSTLRTLDLNNNYV-----QELLVGPSIETLHAAN------- 108
Query: 122 LINSLANHSKLEVLVLSSGNDMLQVKTENWLPTYPLKVLQLSHCHL-NVNSSFLLHQHHL 180
N++ S++ K + L++ + + + +
Sbjct: 109 --NNI---SRVSCSRGQG-----------------KKNIYLANNKITMLRDLDEGCRSRV 146
Query: 181 KFLDLSHNQLVGNFPTWLLQNNTGLEVLILWNNSFSGILPRLPNAKYDKLRHLDISTNNF 240
++LDL N++ L ++ LE L L N + ++ A KL+ LD+S+N
Sbjct: 147 QYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVKGQVVFA---KLKTLDLSSNKL 203
Query: 241 SGKLPENLGIVFQKLIYLDVSKNSFEGNIPYSISEMKELITLDLSRNNFSGELPRSIFSS 300
+ + + ++ + N I ++ + L DL N F R FS
Sbjct: 204 A-FMGPEFQS-AAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSK 260
Query: 301 CLSLETLDL-SNNNFYGQLFPNFMNLTHLSSLRLNNNHFSGKMADGL--LSSTLLDVLDV 357
++T+ + GQ T AD L L +L
Sbjct: 261 NQRVQTVAKQTVKKLTGQNEEECTVPTLGHYGAYCCEDLPAPFADRLIALKRKEHALLSG 320
Query: 358 SNNKLSGDIPHWIGNFSVLWLLLMSENYLQGSIPVQLGNLESLEFIDISENGLSVSMVSL 417
++ + N + + + + I ++ ++ + L
Sbjct: 321 QGSETER-LECERENQARQREIDALKEQYRTVIDQVTLRKQAKITLEQKKKALD----EQ 375
Query: 418 SNLSSVKHIYLHNNAINGLIPIALLRSSTLLT 449
+ H L + I L ++ +
Sbjct: 376 VSNGRRAHAELDGTLQQAVGQIELQHATEEQS 407
|
| >3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487 | Back alignment and structure |
|---|
Score = 101 bits (253), Expect = 3e-23
Identities = 71/415 (17%), Positives = 136/415 (32%), Gaps = 24/415 (5%)
Query: 73 LPQCLNNLTHLKVLDISYNQLSGNFPSVLTNLTSLEYLDLSFIDFQGTFLINSLANHSKL 132
+ + N K+ ++ + L S+ + +++ LDLS LA +KL
Sbjct: 2 IHEIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLS-QISAADLAPFTKL 60
Query: 133 EVLVLSSGNDMLQVKTENWLPTYPLKVLQLSHCHLNVNSSFLLHQHHLKFLDLSHNQLVG 192
E+L LSS N + + L T L+ L L++ ++ LL ++ L ++N +
Sbjct: 61 ELLNLSS-NVLYETLDLESLST--LRTLDLNNNYV----QELLVGPSIETLHAANNNI-S 112
Query: 193 NFPTWLLQNNTGLEVLILWNNSFSGILPRLPNAKYDKLRHLDISTNNFSGKLPENLGIVF 252
Q + + L NN + + L ++++LD+ N L
Sbjct: 113 RVSCSRGQG---KKNIYLANNKITML-RDLDEGCRSRVQYLDLKLNEIDTVNFAELAASS 168
Query: 253 QKLIYLDVSKNSFEGNIPYSISEMKELITLDLSRNNFSGELPRSIFSSCLSLETLDLSNN 312
L +L++ N ++ + +L TLDLS N + + F S + + L NN
Sbjct: 169 DTLEHLNLQYNFIY-DVKGQVV-FAKLKTLDLSSNKLA-FMGPE-FQSAAGVTWISLRNN 224
Query: 313 NFYGQLFPNFMNLTHLSSLRLNNNHFSGKMADGLLSSTLLDVLDVSNNKLSGDIPHWIGN 372
+ +L L N F S V V+ +
Sbjct: 225 KL-VLIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSK-NQRVQTVAKQTVKKLTGQNEEE 282
Query: 373 FSVLWLLLMSENYLQGSIPVQLGNLESL-----EFIDISENGLSVSMVSLSNLSSVKHIY 427
+V L + L +L + + N + + I
Sbjct: 283 CTVPTLGHYGAYCCEDLPAPFADRLIALKRKEHALLSGQGSETERLECERENQARQREID 342
Query: 428 LHNNAINGLIPIALLRSSTLLTLDLRDNKFFGRIPHQINELSNLHFLLLRGNSLQ 482
+I LR +TL+ + ++ + + L L +
Sbjct: 343 ALKEQYRTVIDQVTLRKQAKITLEQKKKALDEQVSNGRRAHAELDGTLQQAVGQI 397
|
| >3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487 | Back alignment and structure |
|---|
Score = 73.0 bits (179), Expect = 6e-14
Identities = 45/362 (12%), Positives = 91/362 (25%), Gaps = 32/362 (8%)
Query: 3 SFGSLKQLKILNLGFNFFIDSILPYLNTLTSLTTLNLRYNKIEGSRTKQGICNLKNLLEL 62
S + K + L N + + L+L+ N+I+ + + L L
Sbjct: 115 SCSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHL 174
Query: 63 DLSSNNFEGHLPQCLNNLTHLKVLDISYNQLSGNFPSVLTNLTSLEYLDLSFIDFQGTFL 122
+L N + + LK LD+S N+L+ + + ++ L +
Sbjct: 175 NLQYNFIY-DVKGQV-VFAKLKTLDLSSNKLA-FMGPEFQSAAGVTWISLRNNKL--VLI 229
Query: 123 INSLANHSKLEVLVLSSGNDMLQVKTENWLPTYPLKVLQLSHCHLNVNSSFLLHQHHLKF 182
+L LE L GN ++ +
Sbjct: 230 EKALRFSQNLEHFDL-RGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQNEEECTVPTL 288
Query: 183 LDLSHNQLVGNFPTWLLQNNTGLEVLILWNNSFSGILPRLPNAKYDKLRHLDISTNNFSG 242
+ + RL K + L +
Sbjct: 289 GHYGAYCC---------------------EDLPAPFADRLIALKRKEHALLSGQGSETER 327
Query: 243 KLPENLGIVFQKLIYLDVSKNSFEGNIPYSISEMKELITLDLSRNNFSGELPRSIFSSCL 302
E + +D K + I + ITL+ + E + +
Sbjct: 328 LECEREN--QARQREIDALKEQYRTVIDQVTLRKQAKITLEQKKKALD-EQVSNGRRAHA 384
Query: 303 SLETLDLSNNNFYGQLFPNFMNLTHLSSLRLNNNHFSGKMADGLLSST-LLDVLDVSNNK 361
L+ +L + L LR + + + D+ +K
Sbjct: 385 ELDGTLQQAVG-QIELQHATEEQSPLQLLRAIVKRYEEMYVEQQSVQNNAIRDWDMYQHK 443
Query: 362 LS 363
+
Sbjct: 444 ET 445
|
| >3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487 | Back alignment and structure |
|---|
Score = 40.6 bits (95), Expect = 8e-04
Identities = 19/164 (11%), Positives = 43/164 (26%), Gaps = 5/164 (3%)
Query: 2 DSFGSLKQLKILNLGFNFFIDSILPYLNTLTSLTTLNLRYNKIEGSRTKQ---GICNLKN 58
+ + + G D P+ + L +L +GS T++ N
Sbjct: 278 QNEEECTVPTLGHYGAYCCEDLPAPFADRLIALKRKEHALLSGQGSETERLECERENQAR 337
Query: 59 LLELDLSSNNFEGHLPQCLNNLTHLKVLDISYNQLSGNFPSVLTNLTSLEYLDLSFIDFQ 118
E+D + + Q L+ L + L+
Sbjct: 338 QREIDALKEQYRTVIDQVTLRKQAKITLEQKKKALDEQVSNGRRAHAELDGTLQQ--AVG 395
Query: 119 GTFLINSLANHSKLEVLVLSSGNDMLQVKTENWLPTYPLKVLQL 162
L ++ S L++L + + ++ +
Sbjct: 396 QIELQHATEEQSPLQLLRAIVKRYEEMYVEQQSVQNNAIRDWDM 439
|
| >3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390 | Back alignment and structure |
|---|
Score = 108 bits (271), Expect = 5e-26
Identities = 72/433 (16%), Positives = 143/433 (33%), Gaps = 73/433 (16%)
Query: 23 SILPYLNTLTSLTTLNLRYNKIEGSRTKQGICNLKNLLELDLSSNNFEGHLPQCLNNLTH 82
I L +++ + + I L N + ++ L++
Sbjct: 12 CIDSNLQYDCVFYDVHIDMQTQDVYFGFEDI-TLNNQKIVTFKNSTMRKLPAALLDSFRQ 70
Query: 83 LKVLDISYNQLSGNFPSVLTNLTSLEYLDLSFIDFQGTFLINSLANHSKLEVLVLSSGND 142
+++L+++ Q+ +++ L + F N++
Sbjct: 71 VELLNLNDLQIEEIDTYAFAYAHTIQKLYMGF---------NAIRY-------------- 107
Query: 143 MLQVKTENWLPTYPLKVLQLSHCHL-NVNSSFLLHQHHLKFLDLSHNQLVGNFPTWLLQN 201
L +P L VL L L ++ + L L +S+N L Q
Sbjct: 108 -LPPHVFQNVPL--LTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLE-RIEDDTFQA 163
Query: 202 NTGLEVLILWNNSFSGILPRLPNAKYDKLRHLDISTNNFSGKLPENLGIVFQKLIYLDVS 261
T L+ L L +N + + + L H ++S N S
Sbjct: 164 TTSLQNLQLSSNRLT----HVDLSLIPSLFHANVSYNLLS-------------------- 199
Query: 262 KNSFEGNIPYSISEMKELITLDLSRNNFSGELPRSIFSSCLSLETLDLSNNNFYGQLFPN 321
+++ + LD S N+ + + + L L L +NN
Sbjct: 200 ----------TLAIPIAVEELDASHNSIN-VVRGPVNV---ELTILKLQHNNL--TDTAW 243
Query: 322 FMNLTHLSSLRLNNNHFSGKMADGLLSSTLLDVLDVSNNKLSGDIPHWIGNFSVLWLLLM 381
+N L + L+ N M + L+ L +SNN+L + + L +L +
Sbjct: 244 LLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLV-ALNLYGQPIPTLKVLDL 302
Query: 382 SENYLQGSIPVQLGNLESLEFIDISENGLSVSMVSLSNLSSVKHIYLHNNAINGLIPIAL 441
S N+L + + LE + + N + + LS ++K++ L +N + AL
Sbjct: 303 SHNHLL-HVERNQPQFDRLENLYLDHNSIVT--LKLSTHHTLKNLTLSHNDWDCNSLRAL 359
Query: 442 LRSSTLLTLDLRD 454
R+ +D D
Sbjct: 360 FRNVARPAVDDAD 372
|
| >3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390 | Back alignment and structure |
|---|
Score = 97.4 bits (243), Expect = 3e-22
Identities = 60/327 (18%), Positives = 121/327 (37%), Gaps = 22/327 (6%)
Query: 157 LKVLQLSHCHL-NVNSSFLLHQHHLKFLDLSHNQLVGNFPTWLLQNNTGLEVLILWNNSF 215
K++ + + + ++ L ++ L+L+ Q+ T+ ++ L + N+
Sbjct: 47 QKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIE-EIDTYAFAYAHTIQKLYMGFNAI 105
Query: 216 SGILPRLPNAKYDKLRHLDISTNNFSGKLPENLGIVFQKLIYLDVSKNSFEGNIPYSISE 275
+ P + L L + N+ S LP + KL L +S N+ E +
Sbjct: 106 RYLPPHVF-QNVPLLTVLVLERNDLS-SLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQA 163
Query: 276 MKELITLDLSRNNFSGELPRSIFSSCLSLETLDLSNNNFYGQLFPNFMNLTHLSSLRLNN 335
L L LS N + + S+ S L ++S N + L ++
Sbjct: 164 TTSLQNLQLSSNRLT-HVDLSLIPS---LFHANVSYNLL-----STLAIPIAVEELDASH 214
Query: 336 NHFSGKMADGLLSSTLLDVLDVSNNKLSGDIPHWIGNFSVLWLLLMSENYLQGSIPVQLG 395
N + + + L +L + +N L+ W+ N+ L + +S N L+ +
Sbjct: 215 NSIN-VVRGPVNVE--LTILKLQHNNLTD--TAWLLNYPGLVEVDLSYNELEKIMYHPFV 269
Query: 396 NLESLEFIDISENGLSVSMVSLSNLSSVKHIYLHNNAINGLIPIALLRSSTLLTLDLRDN 455
++ LE + IS N L + + ++K + L +N + + + L L L N
Sbjct: 270 KMQRLERLYISNNRLVALNLYGQPIPTLKVLDLSHNHLLH-VERNQPQFDRLENLYLDHN 328
Query: 456 KFFGRIPHQINELSNLHFLLLRGNSLQ 482
+ ++ L L L N
Sbjct: 329 SI-VTLK--LSTHHTLKNLTLSHNDWD 352
|
| >3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390 | Back alignment and structure |
|---|
Score = 96.7 bits (241), Expect = 5e-22
Identities = 63/309 (20%), Positives = 112/309 (36%), Gaps = 20/309 (6%)
Query: 175 LHQHHLKFLDLSHNQLVGNFPTWLLQNNTGLEVLILWNNSFSGILPRLPNAKYDKLRHLD 234
+ ++ K + ++ + P LL + +E+L L + I A ++ L
Sbjct: 42 ITLNNQKIVTFKNSTMR-KLPAALLDSFRQVELLNLNDLQIEEIDTYAF-AYAHTIQKLY 99
Query: 235 ISTNNFSGKLPENLGIVFQKLIYLDVSKNSFEGNIPYSISEMKELITLDLSRNNFSGELP 294
+ N LP ++ L L + +N +L TL +S NN +
Sbjct: 100 MGFNAIR-YLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLE-RIE 157
Query: 295 RSIFSSCLSLETLDLSNNNFYGQLFPNFMNLTHLSSLRLNNNHFSGKMADGLLSSTLLDV 354
F + SL+ L LS+N +L H ++ N S L ++
Sbjct: 158 DDTFQATTSLQNLQLSSNRLTHVDLSLIPSLFHA---NVSYNLLST-----LAIPIAVEE 209
Query: 355 LDVSNNKLSGDIPHWIGNFSVLWLLLMSENYLQGSIPVQLGNLESLEFIDISENGLS-VS 413
LD S+N ++ + L +L + N L L N L +D+S N L +
Sbjct: 210 LDASHNSIN-VVRG--PVNVELTILKLQHNNLT-DTAW-LLNYPGLVEVDLSYNELEKIM 264
Query: 414 MVSLSNLSSVKHIYLHNNAINGLIPIALLRSSTLLTLDLRDNKFFGRIPHQINELSNLHF 473
+ ++ +Y+ NN + + + TL LDL N + + L
Sbjct: 265 YHPFVKMQRLERLYISNNRLVA-LNLYGQPIPTLKVLDLSHNHL-LHVERNQPQFDRLEN 322
Query: 474 LLLRGNSLQ 482
L L NS+
Sbjct: 323 LYLDHNSIV 331
|
| >3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390 | Back alignment and structure |
|---|
Score = 88.6 bits (220), Expect = 3e-19
Identities = 73/341 (21%), Positives = 121/341 (35%), Gaps = 54/341 (15%)
Query: 2 DSFGSLKQLKILNLGFNFFIDSILPY-LNTLTSLTTLNLRYNKIEGSRTKQGICNLKNLL 60
S +Q+++LNL I+ I Y ++ L + +N I N+ L
Sbjct: 63 ALLDSFRQVELLNLNDL-QIEEIDTYAFAYAHTIQKLYMGFNAIR-YLPPHVFQNVPLLT 120
Query: 61 ELDLSSNNFEGHLPQCLNNLTHLKVLDISYNQLSGNFPSVLTNLTSLEYLDLSFIDFQGT 120
L L N+ +N L L +S N L TSL+ L LS
Sbjct: 121 VLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSS------ 174
Query: 121 FLINSLANHSKLEVLVLSSGNDMLQVKTENWLPTYPLKVLQLSHCHLNVNSSFLLHQHHL 180
N L + +++ ++ S L +S+ L S L +
Sbjct: 175 ---NRL---THVDLSLIPS-----------------LFHANVSYNLL----STLAIPIAV 207
Query: 181 KFLDLSHNQLVGNFPTWLLQNNTGLEVLILWNNSFSGI--LPRLPNAKYDKLRHLDISTN 238
+ LD SHN + + L +L L +N+ + L P L +D+S N
Sbjct: 208 EELDASHNSIN-VVRGPVNVE---LTILKLQHNNLTDTAWLLNYPG-----LVEVDLSYN 258
Query: 239 NFSGKLPENLGIVFQKLIYLDVSKNSFEGNIPYSISEMKELITLDLSRNNFSGELPRSIF 298
K+ + + Q+L L +S N + + L LDLS N+ + R+
Sbjct: 259 ELE-KIMYHPFVKMQRLERLYISNNRLV-ALNLYGQPIPTLKVLDLSHNHLL-HVERNQP 315
Query: 299 SSCLSLETLDLSNNNFYGQLFPNFMNLTHLSSLRLNNNHFS 339
LE L L +N+ L +L L++N +
Sbjct: 316 -QFDRLENLYLDHNSIV---TLKLSTHHTLKNLTLSHNDWD 352
|
| >3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390 | Back alignment and structure |
|---|
Score = 87.4 bits (217), Expect = 8e-19
Identities = 74/312 (23%), Positives = 126/312 (40%), Gaps = 25/312 (8%)
Query: 2 DSFGSLKQLKILNLGFNFFIDSILPY-LNTLTSLTTLNLRYNKIEGSRTKQGICNLKNLL 60
+F ++ L +GFN I + P+ + LT L L N + S + N L
Sbjct: 87 YAFAYAHTIQKLYMGFNA-IRYLPPHVFQNVPLLTVLVLERNDLS-SLPRGIFHNTPKLT 144
Query: 61 ELDLSSNNFEGHLPQCLNNLTHLKVLDISYNQLSGNFPSVLTNLTSLEYLDLSFIDFQGT 120
L +S+NN E T L+ L +S N+L+ + L+ + SL + ++S+
Sbjct: 145 TLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLT-HVD--LSLIPSLFHANVSYN----- 196
Query: 121 FLINSLANHSKLEVLVLSSGNDMLQVKTENWLPTYPLKVLQLSHCHLNVNSSFLLHQHHL 180
L+++LA +E L S ++ + V L +L+L H +L + L+ L
Sbjct: 197 -LLSTLAIPIAVEELDAS--HNSINVVRGPVNVE--LTILKLQHNNLTDTAWL-LNYPGL 250
Query: 181 KFLDLSHNQLVGNFPTWLLQNNTGLEVLILWNNSFSGILPRLPNAKYDKLRHLDISTNNF 240
+DLS+N+L LE L + NN + L+ LD+S N+
Sbjct: 251 VEVDLSYNELE-KIMYHPFVKMQRLERLYISNNRLVALNLYGQPIP--TLKVLDLSHNHL 307
Query: 241 SGKLPENLGIVFQKLIYLDVSKNSFEGNIPYSISEMKELITLDLSRNNFSGELPRSIFSS 300
+ N F +L L + NS + S L L LS N++ R++F +
Sbjct: 308 L-HVERNQPQ-FDRLENLYLDHNSIV-TLKLST--HHTLKNLTLSHNDWDCNSLRALFRN 362
Query: 301 CLSLETLDLSNN 312
D +
Sbjct: 363 VARPAVDDADQH 374
|
| >2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520 | Back alignment and structure |
|---|
Score = 106 bits (266), Expect = 7e-25
Identities = 97/448 (21%), Positives = 169/448 (37%), Gaps = 28/448 (6%)
Query: 3 SFGSLKQLKILNLGFNFFIDSILPYLNTLTSLTTLNLRYNKIEGSRTKQGICNLKNLLEL 62
SL +L+IL + N + L L+L +NK+ K NL L
Sbjct: 40 DILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNKL----VKISCHPTVNLKHL 95
Query: 63 DLSSNNFEGHLPQC--LNNLTHLKVLDISYNQLSGNFPSVLTNLTSLEYLDLSFIDFQGT 120
DLS N F+ LP C N++ LK L +S L + + +L + L + +
Sbjct: 96 DLSFNAFD-ALPICKEFGNMSQLKFLGLSTTHLEKSSVLPIAHLNISKVLLVLGETYGEK 154
Query: 121 FLINSLANHSKLEVLVLSSGNDMLQVKTENWLPTYPLKVLQLSHCHLNVNSSF------- 173
L + + + ++ N + + T L C L N
Sbjct: 155 EDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILA 214
Query: 174 -LLHQHHLKFLDLSHNQLVGNFPTWLLQ--NNTGLEVLILWNNSFSGILP-RLPNAKYDK 229
L L L L++ + N +LQ +T + + N G L R +
Sbjct: 215 KLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTS 274
Query: 230 LRHLDIS--TNNFSGKLPENLGIVFQKLIYLDVSKNSFEGNIPYSISEMKELITLDLSRN 287
L+ L I ++ G + +F + + + + S++ + LD S N
Sbjct: 275 LKALSIHQVVSDVFGFPQSYIYEIFSNMNIKNFTVSGTRMVHMLCPSKISPFLHLDFSNN 334
Query: 288 NFSGELPRSIFSSCLSLETLDLSNNNF--YGQLFPNFMNLTHLSSLRLNNNHFSGKMADG 345
+ + LETL L N ++ + L L ++ N S G
Sbjct: 335 LLT-DTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKG 393
Query: 346 LLSS-TLLDVLDVSNNKLSGDIPHWIGNFSVLWLLLMSENYLQGSIPVQLGNLESLEFID 404
S L L++S+N L+ I + + +L + N ++ SIP Q+ LE+L+ ++
Sbjct: 394 DCSWTKSLLSLNMSSNILTDTIFRCL--PPRIKVLDLHSNKIK-SIPKQVVKLEALQELN 450
Query: 405 ISENGL-SVSMVSLSNLSSVKHIYLHNN 431
++ N L SV L+S++ I+LH N
Sbjct: 451 VASNQLKSVPDGIFDRLTSLQKIWLHTN 478
|
| >2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520 | Back alignment and structure |
|---|
Score = 103 bits (259), Expect = 5e-24
Identities = 88/471 (18%), Positives = 164/471 (34%), Gaps = 36/471 (7%)
Query: 10 LKILNLGFNFFIDSILPYLNTLTSLTTLNLRYNKIEGSRTKQGICNLKNLLELDLSSNNF 69
ILN+ N+ + + +L+ L L + +N+I+ + L LDLS N
Sbjct: 23 TTILNISQNYISELWTSDILSLSKLRILIISHNRIQ-YLDISVFKFNQELEYLDLSHNKL 81
Query: 70 EGHLPQCLNNLTHLKVLDISYNQL-SGNFPSVLTNLTSLEYLDLSFIDFQGTFLINSLAN 128
+ + +LK LD+S+N + N++ L++L LS +
Sbjct: 82 V-KIS--CHPTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEK--SSVLPIA 136
Query: 129 HSKLEVLVLSSGNDMLQVKTENWLPTYPLKVLQLSHCHLNVNSSFLLHQHHLKFLDLSHN 188
H + ++L G + + L + + L + N F+L +L +
Sbjct: 137 HLNISKVLLVLGETYGEKEDPEGLQDFNTESLHIVF-PTNKEFHFILDVSVKTVANLELS 195
Query: 189 QLVGNFPTWLLQN----------NTGLEVLILWNNSFSG--ILPRLPNAKYDKLRHLDIS 236
+ N L L L N + + L + + + IS
Sbjct: 196 NIKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVWYFSIS 255
Query: 237 TNNFSGKLPENL----GIVFQKLIYLDVSKNSFEGNIPYSISEMKELITLDLSRNNFSGE 292
G+L G + L V + F Y + + + + +
Sbjct: 256 NVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVFGFPQSYIYEIFSNMNIKNFTVSG-TRM 314
Query: 293 LPRSIFSSCLSLETLDLSNNNFYGQLFPNFMNLTHLSSLRLNNNHFS--GKMADGLLSST 350
+ S LD SNN +F N +LT L +L L N K+A+
Sbjct: 315 VHMLCPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMK 374
Query: 351 LLDVLDVSNNKLSGDIPH----WIGNFSVLWLLLMSENYLQGSIPVQLGNLESLEFIDIS 406
L LD+S N +S D W + L + S N L +I L ++ +D+
Sbjct: 375 SLQQLDISQNSVSYDEKKGDCSWTKSLLSLNM---SSNILTDTIFRCL--PPRIKVLDLH 429
Query: 407 ENGLSVSMVSLSNLSSVKHIYLHNNAINGLIPIALLRSSTLLTLDLRDNKF 457
N + + L +++ + + +N + + R ++L + L N +
Sbjct: 430 SNKIKSIPKQVVKLEALQELNVASNQLKSVPDGIFDRLTSLQKIWLHTNPW 480
|
| >2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520 | Back alignment and structure |
|---|
Score = 88.0 bits (218), Expect = 9e-19
Identities = 81/445 (18%), Positives = 151/445 (33%), Gaps = 50/445 (11%)
Query: 57 KNLLELDLSSNNFEGHLPQCLNNLTHLKVLDISYNQLSGNFPSVLTNLTSLEYLDLSFID 116
+ L++S N + +L+ L++L IS+N++ SV LEYLDLS
Sbjct: 21 QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSH-- 78
Query: 117 FQGTFLINSLANHSKLEVLVLSSGNDMLQVKTENWLPTYPLKVLQLSHCHLNV--NSSFL 174
N L S PT LK L LS +
Sbjct: 79 -------NKLVKIS--------------------CHPTVNLKHLDLSFNAFDALPICKEF 111
Query: 175 LHQHHLKFLDLSHNQLVGNFPTWLLQNNTGLEVLILWNNSFSGILPRLPNAKYDKLRHLD 234
+ LKFL LS L + + N +L+L P + H+
Sbjct: 112 GNMSQLKFLGLSTTHLEKSSVLPIAHLNISKVLLVLGETYGEKEDPEGLQDFNTESLHIV 171
Query: 235 ISTNNFSGKLPENLGIVFQKLIYLDVSKNSFEGNIPYSISEMKELIT------LDLSRNN 288
TN + + L ++ + Y +S + +L T L L+
Sbjct: 172 FPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIE 231
Query: 289 FSGELPRSIFS--SCLSLETLDLSNNNFYGQLFPNFM-----NLTHLSSLRLNNNHFSGK 341
+ I ++ +SN GQL +L LS ++ ++ F
Sbjct: 232 TTWNSFIRILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVFGFP 291
Query: 342 MADGLLSSTLLDVLDVSNNKLSGDIPHWIGNFSVLWLLLMSENYLQGSIPVQLGNLESLE 401
+ + +++ + + + S L S N L ++ G+L LE
Sbjct: 292 QSYIYEIFSNMNIKNFTVSGTRMVHMLCPSKISPFLHLDFSNNLLTDTVFENCGHLTELE 351
Query: 402 FIDISENGL-SVSMVS--LSNLSSVKHIYLHNNAINGLIPIALLRS-STLLTLDLRDNKF 457
+ + N L +S ++ + + S++ + + N+++ +LL+L++ N
Sbjct: 352 TLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNIL 411
Query: 458 FGRIPHQINELSNLHFLLLRGNSLQ 482
I + + L L N ++
Sbjct: 412 TDTIFRCL--PPRIKVLDLHSNKIK 434
|
| >2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520 | Back alignment and structure |
|---|
Score = 41.0 bits (96), Expect = 7e-04
Identities = 33/139 (23%), Positives = 57/139 (41%), Gaps = 3/139 (2%)
Query: 349 STLLDVLDVSNNKLSGDIPHWIGNFSVLWLLLMSENYLQGSIPVQLGNLESLEFIDISEN 408
S +L++S N +S I + S L +L++S N +Q + LE++D+S N
Sbjct: 20 SQKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHN 79
Query: 409 GLSVSMVSLSNLSSVKHIYLHNNAINGLIPIALLRSSTLLT-LDLRDNKFFGRIPHQINE 467
L +S ++KH+ L NA + L + + L L L I
Sbjct: 80 KLVK--ISCHPTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEKSSVLPIAH 137
Query: 468 LSNLHFLLLRGNSLQGRIP 486
L+ LL+ G + +
Sbjct: 138 LNISKVLLVLGETYGEKED 156
|
| >4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328 | Back alignment and structure |
|---|
Score = 100 bits (252), Expect = 8e-24
Identities = 53/333 (15%), Positives = 105/333 (31%), Gaps = 29/333 (8%)
Query: 157 LKVLQLSHC-HLNVNSSFLLHQHHLKFLDLSHNQLVGNFPTWLLQNNTGLEVLILWNNSF 215
+ L L L D + W N+ ++ +
Sbjct: 14 RENLYFQGSTALRPYHDVLSQWQRHYNADRNRWHSA-----WRQANSNNPQIETRTGRAL 68
Query: 216 SGILPRLPNAKYDKLRHLDISTNNFSGKLPENLGIVFQKLIYLDVSKNSFEGNIPYSISE 275
L +A L++ + + P+ L ++ + +P ++ +
Sbjct: 69 KATADLLEDATQPGRVALELRSVPLP-QFPDQAF-RLSHLQHMTIDAAGLM-ELPDTMQQ 125
Query: 276 MKELITLDLSRNNFSGELPRSIFSSCLSLETLDLSNNNFYGQLFPNFMNLTHLSSLRLNN 335
L TL L+RN LP SI +S L L + +L + +
Sbjct: 126 FAGLETLTLARNPLR-ALPASI-ASLNRLRELSIRACPELTELPEPLASTDASGEHQGLV 183
Query: 336 NHFSGKMADGLLSSTLLDVLDVSNNKLSGDIPHWIGNFSVLWLLLMSENYLQGSIPVQLG 395
N L L + + +P I N L L + + L ++ +
Sbjct: 184 N---------------LQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLS-ALGPAIH 226
Query: 396 NLESLEFIDISENGLSVSM-VSLSNLSSVKHIYLHNNAINGLIPIALLRSSTLLTLDLRD 454
+L LE +D+ + + +K + L + + +P+ + R + L LDLR
Sbjct: 227 HLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRG 286
Query: 455 NKFFGRIPHQINELSNLHFLLLRGNSLQGRIPN 487
R+P I +L +L+ + +
Sbjct: 287 CVNLSRLPSLIAQLPANCIILVPPHLQAQLDQH 319
|
| >4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328 | Back alignment and structure |
|---|
Score = 96.2 bits (240), Expect = 4e-22
Identities = 55/329 (16%), Positives = 99/329 (30%), Gaps = 20/329 (6%)
Query: 77 LNNLTHLKVLDISYNQLSGNFPSVLTNLTSLEYLDLSFIDFQGTFLINSLANHSKLEVLV 136
++ + + L + + VL+ D + AN + ++
Sbjct: 8 HHHSSGRENLYFQGSTALRPYHDVLSQWQRHYNADRNRWH-----SAWRQANSNNPQIET 62
Query: 137 LSSGNDMLQVKTENWLPTYPLKVLQLSHCHLNVNSSFLLHQHHLKFLDLSHNQLVGNFPT 196
+ L+L L HL+ + + L+ P
Sbjct: 63 RTGRALKATADLLEDATQPGRVALELRSVPLPQFPDQAFRLSHLQHMTIDAAGLM-ELPD 121
Query: 197 WLLQNNTGLEVLILWNNSFSGILPRLPNAKYDKLRHLDISTNNFSGKLPENLGIVF---- 252
+ Q GLE L L N + + + +LR L I +LPE L
Sbjct: 122 TM-QQFAGLETLTLARNPLRALPASIASLN--RLRELSIRACPELTELPEPLASTDASGE 178
Query: 253 ----QKLIYLDVSKNSFEGNIPYSISEMKELITLDLSRNNFSGELPRSIFSSCLSLETLD 308
L L + ++P SI+ ++ L +L + + S L +I LE LD
Sbjct: 179 HQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLS-ALGPAI-HHLPKLEELD 235
Query: 309 LSNNNFYGQLFPNFMNLTHLSSLRLNNNHFSGKMADGLLSSTLLDVLDVSNNKLSGDIPH 368
L P F L L L + + + T L+ LD+ +P
Sbjct: 236 LRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPS 295
Query: 369 WIGNFSVLWLLLMSENYLQGSIPVQLGNL 397
I ++L+ + +
Sbjct: 296 LIAQLPANCIILVPPHLQAQLDQHRPVAR 324
|
| >4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328 | Back alignment and structure |
|---|
Score = 95.8 bits (239), Expect = 5e-22
Identities = 50/337 (14%), Positives = 89/337 (26%), Gaps = 57/337 (16%)
Query: 2 DSFGSLKQLKILNLGFNFFIDSILPYLNTLTSLTTLNLRYNKIEGSRTKQGICNLKNLLE 61
D ++ + + ++ + +
Sbjct: 30 DVLSQWQRHYNADRNRW----HSAWRQANSNNPQIETRTGRALKATADLLEDATQPGRVA 85
Query: 62 LDLSSNNFEGHLPQCLNNLTHLKVLDISYNQLSGNFPSVLTNLTSLEYLDLSFIDFQGTF 121
L+L S P L+HL+ + I L P + LE L L+
Sbjct: 86 LELRSVPLP-QFPDQAFRLSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPL--RA 141
Query: 122 LINSLANHSKLEVLVLSSGNDMLQVKTENWLPTYPLKVLQLSHCHLNVNSSFLLHQHHLK 181
L S+A+ ++L L + + ++ ++ + L + L+
Sbjct: 142 LPASIASLNRLRELSIRACPELTELPEPLASTDASGEHQGLVN---------------LQ 186
Query: 182 FLDLSHNQLVGNFPTWLLQNNTGLEVLILWNNSFSGILPRLPNA--KYDKLRHLDISTNN 239
L L + LP + L+ L I +
Sbjct: 187 SLRLEWTGIR-----------------------------SLPASIANLQNLKSLKIRNSP 217
Query: 240 FSGKLPENLGIVFQKLIYLDVSKNSFEGNIPYSISEMKELITLDLSRNNFSGELPRSIFS 299
S L + KL LD+ + N P L L L + LP I
Sbjct: 218 LS-ALGPAIHH-LPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDI-H 274
Query: 300 SCLSLETLDLSNNNFYGQLFPNFMNLTHLSSLRLNNN 336
LE LDL +L L + + +
Sbjct: 275 RLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPH 311
|
| >4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328 | Back alignment and structure |
|---|
Score = 52.3 bits (126), Expect = 1e-07
Identities = 17/107 (15%), Positives = 34/107 (31%), Gaps = 3/107 (2%)
Query: 2 DSFGSLKQLKILNLGFNFFIDSILPYLNTLTSLTTLNLR-YNKIEGSRTKQGICNLKNLL 60
+ L +L+ L+L + + P L L L+ + + I L L
Sbjct: 223 PAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLL--TLPLDIHRLTQLE 280
Query: 61 ELDLSSNNFEGHLPQCLNNLTHLKVLDISYNQLSGNFPSVLTNLTSL 107
+LDL LP + L ++ + + + +
Sbjct: 281 KLDLRGCVNLSRLPSLIAQLPANCIILVPPHLQAQLDQHRPVARPAE 327
|
| >3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317 | Back alignment and structure |
|---|
Score = 100 bits (251), Expect = 9e-24
Identities = 57/363 (15%), Positives = 123/363 (33%), Gaps = 51/363 (14%)
Query: 2 DSFGSLKQLKILNLGFNFFIDSILPYLNTLTSLTTLNLRYNKIEGSRTKQGICNLKNLLE 61
+ + + KI + + ++ + ++ L+L N + + L
Sbjct: 4 EIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAAD-LAPFTKLEL 62
Query: 62 LDLSSNNFEGHLPQCLNNLTHLKVLDISYNQLSGNFPSVLTNLTSLEYLDLSFIDFQGTF 121
L+LSSN L L +L+ L+ LD++ N + L S+E L +
Sbjct: 63 LNLSSNVLYETLD--LESLSTLRTLDLNNNYV-----QELLVGPSIETLHAAN------- 108
Query: 122 LINSLANHSKLEVLVLSSGNDMLQVKTENWLPTYPLKVLQLSHCHL-NVNSSFLLHQHHL 180
N++ S++ K + L++ + + + +
Sbjct: 109 --NNI---SRVSCSRGQG-----------------KKNIYLANNKITMLRDLDEGCRSRV 146
Query: 181 KFLDLSHNQLVGNFPTWLLQNNTGLEVLILWNNSFSGILPRLPNAKYDKLRHLDISTNNF 240
++LDL N++ L ++ LE L L N + ++ A KL+ LD+S+N
Sbjct: 147 QYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVKGQVVFA---KLKTLDLSSNKL 203
Query: 241 SGKLPENLGIVFQKLIYLDVSKNSFEGNIPYSISEMKELITLDLSRNNFSGELPRSIFSS 300
+ + + ++ + N I ++ + L DL N F R FS
Sbjct: 204 A-FMGPEFQS-AAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSK 260
Query: 301 CLSLETLDLSNNNFYGQLFPNFMNLTHLSSLRLNNNHFSGKMADGLLSSTLLDVLDVSNN 360
++T+ + L H+ + L + ++ + ++
Sbjct: 261 NQRVQTVAKQTVKKLTGQNEEECTVPTLG-------HYGAYCCEDLPAPFADRLIALGHH 313
Query: 361 KLS 363
Sbjct: 314 HHH 316
|
| >3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317 | Back alignment and structure |
|---|
Score = 90.0 bits (224), Expect = 3e-20
Identities = 47/231 (20%), Positives = 94/231 (40%), Gaps = 16/231 (6%)
Query: 253 QKLIYLDVSKNSFEGNIPYSISEMKELITLDLSRNNFSGELPRSIFSSCLSLETLDLSNN 312
+ V+ +S + + + LDLS N S ++ + + LE L+LS+N
Sbjct: 10 NRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLS-QISAADLAPFTKLELLNLSSN 68
Query: 313 NFYGQLFPNFMNLTHLSSLRLNNNHFSGKMADGLLSSTLLDVLDVSNNKLSGDIPHWIGN 372
Y + +L+ L +L LNNN+ LL ++ L +NN +S +
Sbjct: 69 VLYE--TLDLESLSTLRTLDLNNNYVQE-----LLVGPSIETLHAANNNIS-RVS--CSR 118
Query: 373 FSVLWLLLMSENYLQGSIPVQLGNLESLEFIDISENGLSV--SMVSLSNLSSVKHIYLHN 430
+ ++ N + + G ++++D+ N + ++ +++H+ L
Sbjct: 119 GQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQY 178
Query: 431 NAINGLIPIALLRSSTLLTLDLRDNKFFGRIPHQINELSNLHFLLLRGNSL 481
N I + + L TLDL NK + + + + ++ LR N L
Sbjct: 179 NFIYDVKGQVVFAK--LKTLDLSSNKL-AFMGPEFQSAAGVTWISLRNNKL 226
|
| >3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317 | Back alignment and structure |
|---|
Score = 90.0 bits (224), Expect = 4e-20
Identities = 57/284 (20%), Positives = 99/284 (34%), Gaps = 24/284 (8%)
Query: 157 LKVLQLSHCHL-NVNSSFLLHQHHLKFLDLSHNQLVGNFPTWLLQNNTGLEVLILWNNSF 215
K+ +++ L +S ++K LDLS N L L T LE+L L +N
Sbjct: 12 YKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLS-QISAADLAPFTKLELLNLSSNVL 70
Query: 216 SGILP--RLPNAKYDKLRHLDISTNNFSGKLPENLGIVFQKLIYLDVSKNSFEGNIPYSI 273
L L LR LD++ N +L + L + N+ + S
Sbjct: 71 YETLDLESLST-----LRTLDLNNNYVQ-ELLVG-----PSIETLHAANNNIS-RVSCSR 118
Query: 274 SEMKELITLDLSRNNFSGELPRSIFSSCLSLETLDLSNNNFYGQLFPNFM-NLTHLSSLR 332
+ + L+ N + L ++ LDL N F + L L
Sbjct: 119 --GQGKKNIYLANNKIT-MLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLN 175
Query: 333 LNNNHFSGKMADGLLSSTLLDVLDVSNNKLSGDIPHWIGNFSVLWLLLMSENYLQGSIPV 392
L N + + L LD+S+NKL+ + + + + + + N L I
Sbjct: 176 LQYNFIYDVKGQVVFAK--LKTLDLSSNKLA-FMGPEFQSAAGVTWISLRNNKLV-LIEK 231
Query: 393 QLGNLESLEFIDISENGLSVSMVSLSNLSSVKHIYLHNNAINGL 436
L ++LE D+ NG + + + + + L
Sbjct: 232 ALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKL 275
|
| >3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317 | Back alignment and structure |
|---|
Score = 85.0 bits (211), Expect = 2e-18
Identities = 56/296 (18%), Positives = 108/296 (36%), Gaps = 44/296 (14%)
Query: 73 LPQCLNNLTHLKVLDISYNQLSGNFPSVLTNLTSLEYLDLSFIDFQGTFLINSLANHSKL 132
+ + N K+ ++ + L S+ + +++ LDLS N L+ S
Sbjct: 2 IHEIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSG---------NPLSQISAA 52
Query: 133 EVLVLSSGNDMLQVKTENWLPTYPLKVLQLSHCHLNVNSSFLLHQHHLKFLDLSHNQLVG 192
++ + L++L LS L L+ LDL++N +
Sbjct: 53 DLAPFTK-----------------LELLNLSSNVLYETLDL-ESLSTLRTLDLNNNYVQ- 93
Query: 193 NFPTWLLQNNTGLEVLILWNNSFSGILPRLPNAKYDKLRHLDISTNNFSGKLPENLGIVF 252
L +E L NN+ S R+ ++ +++ ++ N + L +
Sbjct: 94 -----ELLVGPSIETLHAANNNIS----RVSCSRGQGKKNIYLANNKIT-MLRDLDEGCR 143
Query: 253 QKLIYLDVSKNSFEG-NIPYSISEMKELITLDLSRNNFSGELPRSIFSSCLSLETLDLSN 311
++ YLD+ N + N + L L+L N ++ + L+TLDLS+
Sbjct: 144 SRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIY-DVKGQVV--FAKLKTLDLSS 200
Query: 312 NNFYGQLFPNFMNLTHLSSLRLNNNHFSGKMADGLLSSTLLDVLDVSNNKLSGDIP 367
N + P F + ++ + L NN + L S L+ D+ N
Sbjct: 201 NKL-AFMGPEFQSAAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFHCGTL 254
|
| >3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317 | Back alignment and structure |
|---|
Score = 84.7 bits (210), Expect = 3e-18
Identities = 47/256 (18%), Positives = 97/256 (37%), Gaps = 16/256 (6%)
Query: 228 DKLRHLDISTNNFSGKLPENLGIVFQKLIYLDVSKNSFEGNIPYSISEMKELITLDLSRN 287
++ + ++ ++ + +L + LD+S N ++ +L L+LS N
Sbjct: 10 NRYKIEKVTDSSLK-QALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSN 68
Query: 288 NFSGELPRSIFSSCLSLETLDLSNNNFYGQLFPNFMNLTHLSSLRLNNNHFSGKMADGLL 347
L S +L TLDL+NN + + +L NN+ S
Sbjct: 69 VLYETLD---LESLSTLRTLDLNNNYV-----QELLVGPSIETLHAANNNISRVSCSRGQ 120
Query: 348 SSTLLDVLDVSNNKLSGDIPHWIGNFSVLWLLLMSENYLQG-SIPVQLGNLESLEFIDIS 406
+ ++NNK++ G S + L + N + + + ++LE +++
Sbjct: 121 G---KKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQ 177
Query: 407 ENGLSVSMVSLSNLSSVKHIYLHNNAINGLIPIALLRSSTLLTLDLRDNKFFGRIPHQIN 466
N + + + +K + L +N + + ++ + + LR+NK I +
Sbjct: 178 YNFIY-DVKGQVVFAKLKTLDLSSNKLAF-MGPEFQSAAGVTWISLRNNKL-VLIEKALR 234
Query: 467 ELSNLHFLLLRGNSLQ 482
NL LRGN
Sbjct: 235 FSQNLEHFDLRGNGFH 250
|
| >3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317 | Back alignment and structure |
|---|
Score = 69.2 bits (170), Expect = 4e-13
Identities = 45/189 (23%), Positives = 79/189 (41%), Gaps = 10/189 (5%)
Query: 295 RSIFSSCLSLETLDLSNNNFYGQLFPNFMNLTHLSSLRLNNNHFSGKMADGLLSSTLLDV 354
I + + +++++ L + ++ L L+ N S A L T L++
Sbjct: 3 HEIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLEL 62
Query: 355 LDVSNNKLSGDIPHWIGNFSVLWLLLMSENYLQGSIPVQLGNLESLEFIDISENGLSVSM 414
L++S+N L + + + S L L ++ NY+Q +L S+E + + N +S
Sbjct: 63 LNLSSNVLY-ETLD-LESLSTLRTLDLNNNYVQ-----ELLVGPSIETLHAANNNIS--R 113
Query: 415 VSLSNLSSVKHIYLHNNAINGLIPIALLRSSTLLTLDLRDNKFFG-RIPHQINELSNLHF 473
VS S K+IYL NN I L + S + LDL+ N+ L
Sbjct: 114 VSCSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEH 173
Query: 474 LLLRGNSLQ 482
L L+ N +
Sbjct: 174 LNLQYNFIY 182
|
| >3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317 | Back alignment and structure |
|---|
Score = 41.1 bits (97), Expect = 5e-04
Identities = 19/95 (20%), Positives = 35/95 (36%), Gaps = 3/95 (3%)
Query: 389 SIPVQLGNLESLEFIDISENGLS-VSMVSLSNLSSVKHIYLHNNAINGLIPIALLRSSTL 447
+I N + ++++ L + +VK + L N ++ + L + L
Sbjct: 1 AIHEIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKL 60
Query: 448 LTLDLRDNKFFGRIPHQINELSNLHFLLLRGNSLQ 482
L+L N + LS L L L N +Q
Sbjct: 61 ELLNLSSNVL--YETLDLESLSTLRTLDLNNNYVQ 93
|
| >3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562 | Back alignment and structure |
|---|
Score = 102 bits (256), Expect = 2e-23
Identities = 89/469 (18%), Positives = 172/469 (36%), Gaps = 34/469 (7%)
Query: 10 LKILNLGFNFFIDSILPY-LNTLTSLTTLNLRYNKIEGSRTKQGIC-NLKNLLELDLSSN 67
K L+L N I + ++ L+ L L L +N+I + ++L LD+S N
Sbjct: 54 TKALSLSQNS-ISELRMPDISFLSELRVLRLSHNRI--RSLDFHVFLFNQDLEYLDVSHN 110
Query: 68 NFEGHLPQCLNNLTHLKVLDISYNQL-SGNFPSVLTNLTSLEYLDLS--------FIDFQ 118
+ ++ + L+ LD+S+N NLT L +L LS +
Sbjct: 111 RLQ-NIS--CCPMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQLDLLPVA 167
Query: 119 GTFLINSLANHSKLEVLVLSSGNDMLQVKTENWLPTYPLKVLQLSHCHLNVNSSFLLHQH 178
L L + + + + + T L +P L +++VN+ L
Sbjct: 168 HLHLSCILLDLVSYHIKGGETESLQIPNTTVLHLVFHPNS-LFSVQVNMSVNALGHLQLS 226
Query: 179 HLKFLDLSHNQLVGNFPTWLLQNNTGLEVLILWNNSFSGILPRLPNAKYDKLRHLDISTN 238
++K D + +L+ L ++ + + +L+I
Sbjct: 227 NIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQFFWPRPVEYLNIYNL 286
Query: 239 NFSGKLPENLGI----VFQKLIYLDVSKNSFEGNIPYSISEMKELITLDLSRNNFSGELP 294
+ ++ + L+ V F + S E+ LS ++ + +
Sbjct: 287 TITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSISD-TPFIH 345
Query: 295 RSIFSSCLSLETLDLSNNNFYGQLFPNFMNLTHLSSLRLNNNHFS--GKMADGLLSSTLL 352
S S L+ + N F +F L L +L L N K+A + + L
Sbjct: 346 MVCPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSL 405
Query: 353 DVLDVSNNKLSGDIP----HWIGNFSVLWLLLMSENYLQGSIPVQLGNLESLEFIDISEN 408
+ LDVS N L+ W + VL L S N L GS+ L ++ +D+ N
Sbjct: 406 ETLDVSLNSLNSHAYDRTCAWAESILVLNL---SSNMLTGSVFRCL--PPKVKVLDLHNN 460
Query: 409 GLSVSMVSLSNLSSVKHIYLHNNAINGLIPIALLRSSTLLTLDLRDNKF 457
+ +++L +++ + + +N + + R ++L + L DN +
Sbjct: 461 RIMSIPKDVTHLQALQELNVASNQLKSVPDGVFDRLTSLQYIWLHDNPW 509
|
| >3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562 | Back alignment and structure |
|---|
Score = 84.2 bits (208), Expect = 2e-17
Identities = 81/442 (18%), Positives = 163/442 (36%), Gaps = 63/442 (14%)
Query: 3 SFGSLKQLKILNLGFNFFID-SILPYLNTLTSLTTLNLRYNKIEGSRTKQGICNLKNLLE 61
S + L+ L+L FN F + LT LT L L K + +
Sbjct: 116 SCCPMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQLDLLPVAHLHLSCIL 175
Query: 62 LDLSSNNFEGHLPQCLNNLTHLKVLDISYNQLSGNFPSVLTNLTSLEYLDLSFIDFQGTF 121
LDL S + +G + L + VL + ++ S V ++ +L +L LS I
Sbjct: 176 LDLVSYHIKGGETESLQIP-NTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKL---- 230
Query: 122 LINSLANHSKLEVLVLSSGNDMLQVKTENWLPTYPLKVLQLSHCHLNVNSSFLLH----- 176
+ + ++ T T +L ++ H+ +
Sbjct: 231 -----------------NDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQFF 273
Query: 177 -QHHLKFLDLSHNQLVGNFPTWLLQNNTGLEVLILWNNSFSGILPRLPNAKYDKLRHLDI 235
+++L++ + + + ++ + + + A Y ++I
Sbjct: 274 WPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNI 333
Query: 236 S--TNNFSGKLPENLGIVFQKLIYLDVSKNSFEGNIPYSISEMKELITLDLSRNNFSGEL 293
+ + + + +L+ ++N F ++ S +K L TL L RN
Sbjct: 334 KMLSISDTPFIHMVCPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLK-NF 392
Query: 294 PR--SIFSSCLSLETLDLSNNNFYGQLFPN-FMNLTHLSSLRLNNNHFSGKMADGLLSST 350
+ + + SLETLD+S N+ + + L L++N +G + L
Sbjct: 393 FKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVFRCLPPK- 451
Query: 351 LLDVLDVSNNKLSGDIPHWIGNFSVLWLLLMSENYLQGSIPVQLGNLESLEFIDISENGL 410
+ VLD+ NN++ SIP + +L++L+ ++++ N L
Sbjct: 452 -VKVLDLHNNRIM-------------------------SIPKDVTHLQALQELNVASNQL 485
Query: 411 -SVSMVSLSNLSSVKHIYLHNN 431
SV L+S+++I+LH+N
Sbjct: 486 KSVPDGVFDRLTSLQYIWLHDN 507
|
| >3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562 | Back alignment and structure |
|---|
Score = 76.4 bits (188), Expect = 5e-15
Identities = 78/467 (16%), Positives = 150/467 (32%), Gaps = 46/467 (9%)
Query: 54 CNLKNLLELDLSSNNFEGHLPQCLNNLTHLKVLDISYNQLSGNFPSVLTNLTSLEYLDLS 113
+ + +D S+ N H+P+ L K L +S N +S ++ L+ L L LS
Sbjct: 28 FSNELESMVDYSNRNLT-HVPKDL--PPRTKALSLSQNSISELRMPDISFLSELRVLRLS 84
Query: 114 FIDFQGTFLINSLANHSKLEVLVLSSGN------DMLQVKTENWLPTYPLKVL------- 160
+ + + + LE L +S + L VL
Sbjct: 85 HNRIR-SLDFHVFLFNQDLEYLDVSHNRLQNISCCPMASLRHLDLSFNDFDVLPVCKEFG 143
Query: 161 ---QLSHCHLNVN-------SSFLLHQHHLKFLDLSHNQLVGNFPTWLLQNNTGLEVLIL 210
+L+ L+ LDL + G L NT + L+
Sbjct: 144 NLTKLTFLGLSAAKFRQLDLLPVAHLHLSCILLDLVSYHIKGGETESLQIPNTTVLHLVF 203
Query: 211 WNNSFSGILPRLPNAKYDKLRHLDISTNNFSGKLPENL------GIVFQKLIYLDVSKNS 264
NS + + L+ +I N+ + + G + +
Sbjct: 204 HPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTW 263
Query: 265 FEGNIPYSISEMKELITLDLSRNNFSGELPRSIFSSCL----SLETLDLSNNNFYGQLFP 320
+ + + L++ + + R F+ SL + N F
Sbjct: 264 KCSVKLFQFFWPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEA 323
Query: 321 NFMNLTHLSSLRLNNNHFSGKMADGLLSSTLLDVLDVSNNKLSGDIPHWIGNFSVLWLLL 380
+ ++ L+ + S + L+ + N + + L L+
Sbjct: 324 LYSVFAEMNIKMLSISDTPFIHMVCPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLI 383
Query: 381 MSENYLQGSIPV---QLGNLESLEFIDISENGLS--VSMVSLSNLSSVKHIYLHNNAING 435
+ N L+ + N+ SLE +D+S N L+ + + S+ + L +N + G
Sbjct: 384 LQRNGLK-NFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTG 442
Query: 436 LIPIALLRSSTLLTLDLRDNKFFGRIPHQINELSNLHFLLLRGNSLQ 482
+ L + LDL +N+ IP + L L L + N L+
Sbjct: 443 SVFRCL--PPKVKVLDLHNNR-IMSIPKDVTHLQALQELNVASNQLK 486
|
| >3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562 | Back alignment and structure |
|---|
Score = 55.3 bits (133), Expect = 2e-08
Identities = 49/311 (15%), Positives = 91/311 (29%), Gaps = 82/311 (26%)
Query: 7 LKQLKILNLGFNFFIDSILP--YLNTLTSLTTLNLRYNKIEGSRTKQGICNLKNLLELDL 64
++ L I NL ID L SL +++ S+ + L
Sbjct: 278 VEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALY-SVFAEMNIKML 336
Query: 65 SSNNFEGHLPQCLNNLTHLKVLDISYNQLSGNFPSVLTNLTSLEYLDLSFIDFQGTFLIN 124
S ++ C + + L+ + N + + + L L+ L L N
Sbjct: 337 SISDTPFIHMVCPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQ---------RN 387
Query: 125 SLANHSKLEVLVLSSGNDMLQVKTENWLPTYPLKVLQLSHCHLNVNSSFLLHQHHLKFLD 184
L N + + L+ LD
Sbjct: 388 GLKN--------------------------------------FFKVALMTKNMSSLETLD 409
Query: 185 LSHNQLVGNFPTWLLQNNTGLEVLILWNNSF-SGILPRLPNAKYDKLRHLDISTNNFSGK 243
+S N L + + VL L +N + LP K++ LD+ N
Sbjct: 410 VSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVFRCLP----PKVKVLDLHNNRIM-- 463
Query: 244 LPENLGIVFQKLIYLDVSKNSFEGNIPYSISEMKELITLDLSRNNFSGELPRSIFSSCLS 303
+IP ++ ++ L L+++ N +P +F S
Sbjct: 464 ------------------------SIPKDVTHLQALQELNVASNQLK-SVPDGVFDRLTS 498
Query: 304 LETLDLSNNNF 314
L+ + L +N +
Sbjct: 499 LQYIWLHDNPW 509
|
| >3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597 | Back alignment and structure |
|---|
Score = 102 bits (255), Expect = 2e-23
Identities = 74/449 (16%), Positives = 148/449 (32%), Gaps = 76/449 (16%)
Query: 19 FFIDSILPYLNTLTSLTTLNLRYNKIEGSRTKQGICNLKNLLELDLSSNNFEGHLPQCLN 78
IDS L Y + + G L N + ++ L+
Sbjct: 17 KCIDSNLQYDCVFYDVHIDMQTQDVYFGFED----ITLNNQKIVTFKNSTMRKLPAALLD 72
Query: 79 NLTHLKVLDISYNQLSGNFPSVLTNLTSLEYLDLSFIDFQGTFLINSLANHSKLEVLVLS 138
+ +++L+++ Q+ +++ L + F N++
Sbjct: 73 SFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGF---------NAIR----------- 112
Query: 139 SGNDMLQVKTENWLPTYPLKVLQLSHCHLNVNSSFLLHQHHLKFLDLSHNQLVGNFPTWL 198
+ + L L L N L + P +
Sbjct: 113 -----------------------------YLPPHVFQNVPLLTVLVLERNDLS-SLPRGI 142
Query: 199 LQNNTGLEVLILWNNSFSGILPRLPNAKYDKLRHLDISTNNFSGKLPENLGIVFQKLIYL 258
N L L + NN+ I L++L +S+N + + +L L +
Sbjct: 143 FHNTPKLTTLSMSNNNLERIEDDTF-QATTSLQNLQLSSNRLT-HVDLSL---IPSLFHA 197
Query: 259 DVSKNSFEGNIPYSISEMKELITLDLSRNNFSGELPRSIFSSCLSLETLDLSNNNFYGQL 318
+VS N +++ + LD S N+ + + + L L L +NN
Sbjct: 198 NVSYNLLS-----TLAIPIAVEELDASHNSIN-VVRGPVNV---ELTILKLQHNNL--TD 246
Query: 319 FPNFMNLTHLSSLRLNNNHFSGKMADGLLSSTLLDVLDVSNNKLSGDIPHWIGNFSVLWL 378
+N L + L+ N M + L+ L +SNN+L + + L +
Sbjct: 247 TAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLV-ALNLYGQPIPTLKV 305
Query: 379 LLMSENYLQGSIPVQLGNLESLEFIDISENGLSVSMVSLSNLSSVKHIYLHNNAINGLIP 438
L +S N+L + + LE + + N + + LS ++K++ L +N +
Sbjct: 306 LDLSHNHLL-HVERNQPQFDRLENLYLDHNSI--VTLKLSTHHTLKNLTLSHNDWDCNSL 362
Query: 439 IALLRSSTLLTLDLRDNKFFGRIPHQINE 467
AL R+ + + D +I +Q+
Sbjct: 363 RALFRN--VARPAVDDADQHCKIDYQLEH 389
|
| >3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597 | Back alignment and structure |
|---|
Score = 93.1 bits (231), Expect = 3e-20
Identities = 60/327 (18%), Positives = 120/327 (36%), Gaps = 22/327 (6%)
Query: 157 LKVLQLSHCHL-NVNSSFLLHQHHLKFLDLSHNQLVGNFPTWLLQNNTGLEVLILWNNSF 215
K++ + + + ++ L ++ L+L+ Q+ T+ ++ L + N+
Sbjct: 53 QKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIE-EIDTYAFAYAHTIQKLYMGFNAI 111
Query: 216 SGILPRLPNAKYDKLRHLDISTNNFSGKLPENLGIVFQKLIYLDVSKNSFEGNIPYSISE 275
+ P + L L + N+ S LP + KL L +S N+ E +
Sbjct: 112 RYLPPHVF-QNVPLLTVLVLERNDLS-SLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQA 169
Query: 276 MKELITLDLSRNNFSGELPRSIFSSCLSLETLDLSNNNFYGQLFPNFMNLTHLSSLRLNN 335
L L LS N + + S+ S L ++S N + L ++
Sbjct: 170 TTSLQNLQLSSNRLT-HVDLSLIPS---LFHANVSYNLL-----STLAIPIAVEELDASH 220
Query: 336 NHFSGKMADGLLSSTLLDVLDVSNNKLSGDIPHWIGNFSVLWLLLMSENYLQGSIPVQLG 395
N + + L +L + +N L+ W+ N+ L + +S N L+ +
Sbjct: 221 NSINVVRGPVNVE---LTILKLQHNNLTD--TAWLLNYPGLVEVDLSYNELEKIMYHPFV 275
Query: 396 NLESLEFIDISENGLSVSMVSLSNLSSVKHIYLHNNAINGLIPIALLRSSTLLTLDLRDN 455
++ LE + IS N L + + ++K + L +N + + + L L L N
Sbjct: 276 KMQRLERLYISNNRLVALNLYGQPIPTLKVLDLSHNHLLH-VERNQPQFDRLENLYLDHN 334
Query: 456 KFFGRIPHQINELSNLHFLLLRGNSLQ 482
+ ++ L L L N
Sbjct: 335 SI-VTLK--LSTHHTLKNLTLSHNDWD 358
|
| >3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597 | Back alignment and structure |
|---|
Score = 92.7 bits (230), Expect = 3e-20
Identities = 63/309 (20%), Positives = 113/309 (36%), Gaps = 20/309 (6%)
Query: 175 LHQHHLKFLDLSHNQLVGNFPTWLLQNNTGLEVLILWNNSFSGILPRLPNAKYDKLRHLD 234
+ ++ K + ++ + P LL + +E+L L + I A ++ L
Sbjct: 48 ITLNNQKIVTFKNSTMR-KLPAALLDSFRQVELLNLNDLQIEEIDTYAF-AYAHTIQKLY 105
Query: 235 ISTNNFSGKLPENLGIVFQKLIYLDVSKNSFEGNIPYSISEMKELITLDLSRNNFSGELP 294
+ N LP ++ L L + +N +L TL +S NN +
Sbjct: 106 MGFNAIR-YLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLE-RIE 163
Query: 295 RSIFSSCLSLETLDLSNNNFYGQLFPNFMNLTHLSSLRLNNNHFSGKMADGLLSSTLLDV 354
F + SL+ L LS+N +L H + ++ N S L ++
Sbjct: 164 DDTFQATTSLQNLQLSSNRLTHVDLSLIPSLFHAN---VSYNLLST-----LAIPIAVEE 215
Query: 355 LDVSNNKLSGDIPHWIGNFSVLWLLLMSENYLQGSIPVQLGNLESLEFIDISENGLS-VS 413
LD S+N ++ + L +L + N L L N L +D+S N L +
Sbjct: 216 LDASHNSIN-VVRG--PVNVELTILKLQHNNLT-DTAW-LLNYPGLVEVDLSYNELEKIM 270
Query: 414 MVSLSNLSSVKHIYLHNNAINGLIPIALLRSSTLLTLDLRDNKFFGRIPHQINELSNLHF 473
+ ++ +Y+ NN + + + TL LDL N + + L
Sbjct: 271 YHPFVKMQRLERLYISNNRLVA-LNLYGQPIPTLKVLDLSHNHL-LHVERNQPQFDRLEN 328
Query: 474 LLLRGNSLQ 482
L L NS+
Sbjct: 329 LYLDHNSIV 337
|
| >3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597 | Back alignment and structure |
|---|
Score = 85.0 bits (210), Expect = 1e-17
Identities = 73/341 (21%), Positives = 121/341 (35%), Gaps = 54/341 (15%)
Query: 2 DSFGSLKQLKILNLGFNFFIDSILPY-LNTLTSLTTLNLRYNKIEGSRTKQGICNLKNLL 60
S +Q+++LNL I+ I Y ++ L + +N I N+ L
Sbjct: 69 ALLDSFRQVELLNLNDL-QIEEIDTYAFAYAHTIQKLYMGFNAIR-YLPPHVFQNVPLLT 126
Query: 61 ELDLSSNNFEGHLPQCLNNLTHLKVLDISYNQLSGNFPSVLTNLTSLEYLDLSFIDFQGT 120
L L N+ +N L L +S N L TSL+ L LS
Sbjct: 127 VLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSS------ 180
Query: 121 FLINSLANHSKLEVLVLSSGNDMLQVKTENWLPTYPLKVLQLSHCHLNVNSSFLLHQHHL 180
N L + +++ ++ S L +S+ L S L +
Sbjct: 181 ---NRL---THVDLSLIPS-----------------LFHANVSYNLL----STLAIPIAV 213
Query: 181 KFLDLSHNQLVGNFPTWLLQNNTGLEVLILWNNSFSGI--LPRLPNAKYDKLRHLDISTN 238
+ LD SHN + + L +L L +N+ + L P L +D+S N
Sbjct: 214 EELDASHNSIN-VVRGPVNVE---LTILKLQHNNLTDTAWLLNYPG-----LVEVDLSYN 264
Query: 239 NFSGKLPENLGIVFQKLIYLDVSKNSFEGNIPYSISEMKELITLDLSRNNFSGELPRSIF 298
K+ + + Q+L L +S N + + L LDLS N+ + R+
Sbjct: 265 ELE-KIMYHPFVKMQRLERLYISNNRLV-ALNLYGQPIPTLKVLDLSHNHLL-HVERNQP 321
Query: 299 SSCLSLETLDLSNNNFYGQLFPNFMNLTHLSSLRLNNNHFS 339
LE L L +N+ L +L L++N +
Sbjct: 322 -QFDRLENLYLDHNSIV---TLKLSTHHTLKNLTLSHNDWD 358
|
| >3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597 | Back alignment and structure |
|---|
Score = 82.7 bits (204), Expect = 6e-17
Identities = 77/365 (21%), Positives = 142/365 (38%), Gaps = 31/365 (8%)
Query: 2 DSFGSLKQLKILNLGFNFFIDSILPY-LNTLTSLTTLNLRYNKIEGSRTKQGICNLKNLL 60
+F ++ L +GFN I + P+ + LT L L N + S + N L
Sbjct: 93 YAFAYAHTIQKLYMGFN-AIRYLPPHVFQNVPLLTVLVLERNDLS-SLPRGIFHNTPKLT 150
Query: 61 ELDLSSNNFEGHLPQCLNNLTHLKVLDISYNQLSGNFPSVLTNLTSLEYLDLSFIDFQGT 120
L +S+NN E T L+ L +S N+L+ S++ +L ++S+
Sbjct: 151 TLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVDLSLIPSLFH---ANVSYN----- 202
Query: 121 FLINSLANHSKLEVLVLSSGNDMLQVKTENWLPTYPLKVLQLSHCHLNVNSSFLLHQHHL 180
L+++LA +E L S N + V+ L +L+L H +L + L+ L
Sbjct: 203 -LLSTLAIPIAVEELDA-SHNSINVVRGPV---NVELTILKLQHNNLTDTAWL-LNYPGL 256
Query: 181 KFLDLSHNQLVGNFPTWLLQNNTGLEVLILWNNSFSGILPRLPNAKYDKLRHLDISTNNF 240
+DLS+N+L LE L + NN + L+ LD+S N+
Sbjct: 257 VEVDLSYNELE-KIMYHPFVKMQRLERLYISNNRLVALNLYGQPIP--TLKVLDLSHNHL 313
Query: 241 SGKLPENLGIVFQKLIYLDVSKNSFEGNIPYSISEMKELITLDLSRNNFSGELPRSIFSS 300
+ N F +L L + NS + S L L LS N++ R++F +
Sbjct: 314 L-HVERNQPQ-FDRLENLYLDHNSIV-TLKLST--HHTLKNLTLSHNDWDCNSLRALFRN 368
Query: 301 CLSLETLDLSNNNFYGQLFPNFMNLTHLSSLRLNNNHFSGKMADGLLSSTLLDVLDVSNN 360
D + L H + ++ + ++ + +++++ + +
Sbjct: 369 VARPAVDDADQH------CKIDYQLEHGLCCKESDKPYLDRLLQYIALTSVVEKVQRAQG 422
Query: 361 KLSGD 365
+ S
Sbjct: 423 RCSAT 427
|
| >3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455 | Back alignment and structure |
|---|
Score = 101 bits (253), Expect = 2e-23
Identities = 94/416 (22%), Positives = 153/416 (36%), Gaps = 56/416 (13%)
Query: 32 TSLTTLNLRYNKIEGSRTKQGICNLKNLLELDLSSNNFEGHLPQ-CLNNLTHLKVLDISY 90
+ ++L N I + L++L L + + L+ L +L + Y
Sbjct: 30 AHVNYVDLSLNSIA-ELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDY 88
Query: 91 NQLSGNFPSVLTNLTSLEYLDLSFIDFQGTFL-INSLANHSKLEVLVLSSGNDMLQVKTE 149
NQ L +LE L L+ + G L N + LE+LVL N++ +++
Sbjct: 89 NQFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVL-RDNNIKKIQPA 147
Query: 150 NWLPTYP-LKVLQLSHCHLNV--NSSFL-LHQHHLKFLDLSHNQLVGNFPTWL------- 198
++ VL L+ + L H L LS L WL
Sbjct: 148 SFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGN 207
Query: 199 LQNNTGLEVLILWNNSFSGILPRLPNAKYDKLRHLDISTNNFSGKLPENLGIVFQKLIYL 258
NT + L L N F + + +D + I + S N+G F +
Sbjct: 208 PFKNTSITTLDLSGNGFKESMAK---RFFDAIAGTKIQSLILS--NSYNMGSSFGHTNFK 262
Query: 259 DVSKNSFEGNIPYSISEMKELITLDLSRNNFSGELPRSIFSSCLSLETLDLSNNNFYGQL 318
D +F+G E + T DLS++ L +S+FS LE L L+ N ++
Sbjct: 263 DPDNFTFKGL------EASGVKTCDLSKSKIF-ALLKSVFSHFTDLEQLTLAQNEI-NKI 314
Query: 319 FPN-FMNLTHLSSLRLNNNHFSGKMADGLLSSTLLDVLDVSNNKLSGDIPHWIGNFSVLW 377
N F LTHL L L+ N + + L+VLD+S N +
Sbjct: 315 DDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIR-------------- 360
Query: 378 LLLMSENYLQGSIPVQL-GNLESLEFIDISENGL-SVSMVSLSNLSSVKHIYLHNN 431
++ Q L +L+ + + N L SV L+S++ I+LH N
Sbjct: 361 -----------ALGDQSFLGLPNLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTN 405
|
| >3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455 | Back alignment and structure |
|---|
Score = 98.3 bits (245), Expect = 3e-22
Identities = 66/348 (18%), Positives = 123/348 (35%), Gaps = 24/348 (6%)
Query: 2 DSFGSLKQLKILNLGFNFFIDSILPY-LNTLTSLTTLNLRYNKIEGSRTKQGI-CNLKNL 59
++F L L IL L +N + N L +L L L ++G+ L +L
Sbjct: 73 NTFRGLSSLIILKLDYN-QFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSL 131
Query: 60 LELDLSSNNFEGHLPQCL-NNLTHLKVLDISYNQLSGNFPSVLTNLTSLEYLDLSFIDFQ 118
L L NN + P N+ VLD+++N++ L N + L
Sbjct: 132 EMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSSIT 191
Query: 119 GTFLINSLANHSKLEVLVLSSGNDMLQVKTENWLPTYP------LKVLQLSHCHLNVNSS 172
+ K ++ L + + + + ++ L+ + +
Sbjct: 192 LQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYN 251
Query: 173 FLLHQHHLKFLDLSHNQLVGNFPTWLLQNNTGLEVLILWNNSFSGILPRLPNAKYDKLRH 232
H F D + G +G++ L + +L + + + L
Sbjct: 252 MGSSFGHTNFKDPDNFTFKGL-------EASGVKTCDLSKSKIFALLKSVF-SHFTDLEQ 303
Query: 233 LDISTNNFSGKLPENLGIVFQKLIYLDVSKNSFEGNIPYSISEMKELITLDLSRNNFSGE 292
L ++ N + K+ +N L+ L++S+N + +L LDLS N+
Sbjct: 304 LTLAQNEIN-KIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIR-A 361
Query: 293 LPRSIFSSCLSLETLDLSNNNFYGQLFPN--FMNLTHLSSLRLNNNHF 338
L F +L+ L L N + P+ F LT L + L+ N +
Sbjct: 362 LGDQSFLGLPNLKELALDTNQL--KSVPDGIFDRLTSLQKIWLHTNPW 407
|
| >3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455 | Back alignment and structure |
|---|
Score = 97.9 bits (244), Expect = 3e-22
Identities = 73/353 (20%), Positives = 123/353 (34%), Gaps = 39/353 (11%)
Query: 3 SFGSLKQLKILNLGFNFFIDSILPYL-NTLTSLTTLNLRYNKIEGSRTKQGICNLKNLLE 61
SF L+ L+ L + I L+SL L L YN+ L NL
Sbjct: 49 SFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFL-QLETGAFNGLANLEV 107
Query: 62 LDLSSNNFEGHL--PQCLNNLTHLKVLDISYNQLSGNFP-SVLTNLTSLEYLDLSFIDFQ 118
L L+ N +G + LT L++L + N + P S N+ LDL+F +
Sbjct: 108 LTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVK 167
Query: 119 GTFLINSLANHSKLEVLVLSSGNDMLQVKTENWLPTYPLKVLQLSHCHLNVNSSFLLHQH 178
+ L N +L + LQ E WL
Sbjct: 168 -SICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGN--------------PFKNT 212
Query: 179 HLKFLDLSHNQLVGNFPTWLLQNNTGLEVLILWNNSFSGILPRLP-------------NA 225
+ LDLS N + G ++ L ++ +
Sbjct: 213 SITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTFKGL 272
Query: 226 KYDKLRHLDISTNNFSGKLPENLGIVFQKLIYLDVSKNSFEGNIPYSISEMKELITLDLS 285
+ ++ D+S + L +++ F L L +++N + + L+ L+LS
Sbjct: 273 EASGVKTCDLSKSKIF-ALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLS 331
Query: 286 RNNFSGELPRSIFSSCLSLETLDLSNNNFYGQLFPN--FMNLTHLSSLRLNNN 336
+N + +F + LE LDLS N+ + + F+ L +L L L+ N
Sbjct: 332 QNFLG-SIDSRMFENLDKLEVLDLSYNHI--RALGDQSFLGLPNLKELALDTN 381
|
| >3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455 | Back alignment and structure |
|---|
Score = 57.4 bits (139), Expect = 5e-09
Identities = 46/250 (18%), Positives = 80/250 (32%), Gaps = 29/250 (11%)
Query: 257 YLDVSKNSFEGNIPYSISEMKELITLDLSRNNFSGELPRSIFSSCLSLETLDLSNNNFYG 316
Y+D+S NS S S +++L L + + + + F SL L L N F
Sbjct: 34 YVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQF-- 91
Query: 317 QLFPN--FMNLTHLSSLRLNNNHF-SGKMADGLLSS-TLLDVLDVSNNKLSGDIPHWI-- 370
F L +L L L + ++ T L++L + +N + P
Sbjct: 92 LQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFL 151
Query: 371 --GNFSVLWLLLMSENYLQ----------GSIPVQLGNLESLEFIDISENGLSVSMV-SL 417
F VL L + N ++ L L S+ D++E L +
Sbjct: 152 NMRRFHVLDL---TFNKVKSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNP 208
Query: 418 SNLSSVKHIYLHNNAINGLIPIALLRSSTL-----LTLDLRDNKFFGRIPHQINELSNLH 472
+S+ + L N + + L L N + N
Sbjct: 209 FKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFT 268
Query: 473 FLLLRGNSLQ 482
F L + ++
Sbjct: 269 FKGLEASGVK 278
|
| >3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622 | Back alignment and structure |
|---|
Score = 98.8 bits (246), Expect = 4e-22
Identities = 68/305 (22%), Positives = 109/305 (35%), Gaps = 51/305 (16%)
Query: 179 HLKFLDLSHNQLVGNFPTWLLQNNTGLEVLILWNNSFSGILPRLPNAKYDKLRHLDISTN 238
L++ + L P L + + L++ +N+ + + P LR L++S N
Sbjct: 41 GNAVLNVGESGL-TTLPDCLPAH---ITTLVIPDNNLTSLPALPPE-----LRTLEVSGN 91
Query: 239 NFSGKLPENLGIVFQKLIYLDVSKNSFEGNIPYSISEMKELITLDLSRNNFSGELPRSIF 298
+ LP +L L L + N + LP
Sbjct: 92 QLT-SLPVLPP-GLLELSIFSNPLTHLPALPS-------GLCKLWIFGNQLT-SLPVLPP 141
Query: 299 SSCLSLETLDLSNNNFYGQLFPNFMNLTHLSSLRLNNNHFSGKMADGLLSSTL--LDVLD 356
L+ L +S+N P + L L NN + L L L
Sbjct: 142 G----LQELSVSDNQL--ASLPA--LPSELCKLWAYNNQLTS------LPMLPSGLQELS 187
Query: 357 VSNNKLSGDIPHWIGNFSVLWLLLMSENYLQGSIPVQLGNLESLEFIDISENGLSVSMVS 416
VS+N+L+ +P LW N L S+P L+ L +S N L+ V
Sbjct: 188 VSDNQLA-SLPTLPSELYKLWAY---NNRLT-SLPALPSGLKEL---IVSGNRLTSLPVL 239
Query: 417 LSNLSSVKHIYLHNNAINGLIPIALLRSSTLLTLDLRDNKFFGRIPHQINELSNLHFLLL 476
S L K + + N + L P+ S LL+L + N+ R+P + LS+ + L
Sbjct: 240 PSEL---KELMVSGNRLTSL-PMLP---SGLLSLSVYRNQL-TRLPESLIHLSSETTVNL 291
Query: 477 RGNSL 481
GN L
Sbjct: 292 EGNPL 296
|
| >3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622 | Back alignment and structure |
|---|
Score = 98.0 bits (244), Expect = 6e-22
Identities = 72/389 (18%), Positives = 120/389 (30%), Gaps = 66/389 (16%)
Query: 53 ICNLKNLLELDLSSNNFEGHLPQCLNNLTHLKVLDISYNQLSGNFPSVLTNLTSLEYLDL 112
C L++ + LP CL H+ L I N L+ + P++ L + L++
Sbjct: 36 ACLNNGNAVLNVGESGLT-TLPDCL--PAHITTLVIPDNNLT-SLPALPPELRT---LEV 88
Query: 113 SFIDFQGTFLINSLANHSKLEVLVLSSGNDMLQVKTENWLPTYP--LKVLQLSHCHLNVN 170
S T L +L + LP P L L + L
Sbjct: 89 SGNQL--TSLPVLPPGLLELSIFSNPL----------THLPALPSGLCKLWIFGNQLTSL 136
Query: 171 SSFLLHQHHLKFLDLSHNQLVGNFPTWLLQNNTGLEVLILWNNSFSGILPRLPNAKYDKL 230
L+ L +S NQL L + L L +NN + + L
Sbjct: 137 PVLPP---GLQELSVSDNQL-----ASLPALPSELCKLWAYNNQLTSLPMLPSG-----L 183
Query: 231 RHLDISTNNFSGKLPENLGIVFQKLIYLDVSKNSFEGNIPYSISEMKELI---------- 280
+ L +S N + LP +L L N ++P S +KELI
Sbjct: 184 QELSVSDNQLA-SLPTLPS----ELYKLWAYNNRLT-SLPALPSGLKELIVSGNRLTSLP 237
Query: 281 -------TLDLSRNNFSGELPRSIFSSCLSLETLDLSNNNFYGQLFPNFMNLTHLSSLRL 333
L +S N + LP L +L + N +L + ++L+ +++ L
Sbjct: 238 VLPSELKELMVSGNRLT-SLPMLP----SGLLSLSVYRNQL-TRLPESLIHLSSETTVNL 291
Query: 334 NNNHFSGKMADGLLSSTLLDVLDVSNNKLSGDIPHWIGNFSVLWLLLMSENYLQGSIPVQ 393
N S + L T + L L ++L + +
Sbjct: 292 EGNPLSERTLQALREITSAPGYSGPIIRFDMAGASAPRETRALHLAA--ADWLVPAREGE 349
Query: 394 LGNLESLEFIDISENGLSVSMVSLSNLSS 422
+ E+ + L LS
Sbjct: 350 PAPADRWHMFG-QEDNADAFSLFLDRLSE 377
|
| >3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622 | Back alignment and structure |
|---|
Score = 91.9 bits (228), Expect = 6e-20
Identities = 62/281 (22%), Positives = 93/281 (33%), Gaps = 45/281 (16%)
Query: 202 NTGLEVLILWNNSFSGILPRLPNAKYDKLRHLDISTNNFSGKLPENLGIVFQKLIYLDVS 261
N G VL + + L LP+ + L I NN + LP +L L+VS
Sbjct: 39 NNGNAVLNVGESG----LTTLPDCLPAHITTLVIPDNNLT-SLPALPP----ELRTLEVS 89
Query: 262 KNSFEGNIPYSISEMKELITLDLSRNNFSGELPRSIFSSCLSLETLDLSNNNFYGQLFPN 321
N ++P + EL + L L + N P
Sbjct: 90 GNQLT-SLPVLPPGLLELSIFSNPLTHLPALPS--------GLCKLWIFGNQL--TSLPV 138
Query: 322 FMNLTHLSSLRLNNNHFSGKMADGLLSSTLLDVLDVSNNKLSGDIPHWIGNFSVLWLLLM 381
L L +++N + L S L L NN+L+ +P L +
Sbjct: 139 --LPPGLQELSVSDNQLA--SLPALPSE--LCKLWAYNNQLT-SLPMLPSGLQELSV--- 188
Query: 382 SENYLQGSIPVQLGNLESLEFIDISENGLSVSMVSLSNLSSVKHIYLHNNAINGLIPIAL 441
S+N L S+P L L N L+ S L K + + N + L P+
Sbjct: 189 SDNQLA-SLPTLPSELYKLW---AYNNRLTSLPALPSGL---KELIVSGNRLTSL-PVLP 240
Query: 442 LRSSTLLTLDLRDNKFFGRIPHQINELSNLHFLLLRGNSLQ 482
S L L + N+ +P S L L + N L
Sbjct: 241 ---SELKELMVSGNRL-TSLP---MLPSGLLSLSVYRNQLT 274
|
| >3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622 | Back alignment and structure |
|---|
Score = 85.3 bits (211), Expect = 8e-18
Identities = 62/355 (17%), Positives = 109/355 (30%), Gaps = 69/355 (19%)
Query: 6 SLKQLKILNLGFNFFIDSILPYLNTLTSLTTLNLRYNKIEGSRTKQGICNLKNLLELDLS 65
+L+ L + N + S+ L L+ + + L +L +
Sbjct: 79 LPPELRTLEVSGN-QLTSLPVLPPGLLELSIFSNPLTHLPAL--------PSGLCKLWIF 129
Query: 66 SNNFEGHLPQCLNNLTHLKVLDISYNQLSGNFPSVLTNLTSLEYLDLSFIDFQGTFLINS 125
N LP L L +S NQL+ + P++ + L L
Sbjct: 130 GNQLT-SLPVLPPGLQE---LSVSDNQLA-SLPALPSELCKLW----------------- 167
Query: 126 LANHSKLEVLVLSSGNDMLQVKTENWLPTYPLKVLQLSHCHLNVNSSFLLHQHHLKFLDL 185
A +++L L + L+ L +S L + L L
Sbjct: 168 -AYNNQLTSLPMLPSG---------------LQELSVSDNQLASLPTLP---SELYKLWA 208
Query: 186 SHNQLVGNFPTWLLQNNTGLEVLILWNNSFSGILPRLPNAKYDKLRHLDISTNNFSGKLP 245
+N+L T L +GL+ LI+ N + LP LP+ +L+ L +S N + LP
Sbjct: 209 YNNRL-----TSLPALPSGLKELIVSGNRLTS-LPVLPS----ELKELMVSGNRLT-SLP 257
Query: 246 ENLGIVFQKLIYLDVSKNSFEGNIPYSISEMKELITLDLSRNNFSGELPRSIFSSCLSLE 305
L+ L V +N +P S+ + T++L N S E S
Sbjct: 258 MLPS----GLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLS-ERTLQALREITSAP 311
Query: 306 TLDLSNNNFYGQLFPNFMNLTHLSSLRLNNNHFSGKMADGLLSSTLLDVLDVSNN 360
S + + + + + +N
Sbjct: 312 --GYSGPIIRFDMAGASAPRETRALHLAAADWLVPAREGEPAPADRWHMFGQEDN 364
|
| >1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461 | Back alignment and structure |
|---|
Score = 95.0 bits (237), Expect = 4e-21
Identities = 84/463 (18%), Positives = 158/463 (34%), Gaps = 85/463 (18%)
Query: 32 TSLTTLNLRYNKIEGSRTKQGICNLKNLLELDLSSNNFE----GHLPQCLNNLTHLKVLD 87
+ +L+++ ++ +R + + L+ + L + L L L+
Sbjct: 3 LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELN 62
Query: 88 ISYNQLSGNFPSVL-----TNLTSLEYLDLSFIDFQG---TFLINSLANHSKLEVLVLSS 139
+ N+L + T ++ L L G L ++L L+ L LS
Sbjct: 63 LRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSD 122
Query: 140 ---GNDMLQVKTENWL-PTYPLKVLQLSHCHLNVN-----SSFLLHQHHLKFLDLSHNQL 190
G+ LQ+ E L P L+ LQL +C L+ +S L + K L +S+N +
Sbjct: 123 NLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDI 182
Query: 191 ----VGNFPTWLLQNNTGLEVLILWNNS--------FSGILPRLPNAKYDKLRHLDISTN 238
V L + LE L L + GI+ + LR L + +N
Sbjct: 183 NEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKAS-----LRELALGSN 237
Query: 239 NFSGK----LPENLGIVFQKLIYLDVSKNSFE----GNIPYSISEMKELITLDLSRNNFS 290
L L +L L + + G++ + + L L L+ N
Sbjct: 238 KLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELG 297
Query: 291 GE----LPRSIFSSCLSLETLDLSNNNFYGQLFPNF----MNLTHLSSLRLNNNHFSGK- 341
E L ++ LE+L + + +F +F L L+++NN
Sbjct: 298 DEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAG 357
Query: 342 ---MADGLLSS-TLLDVLDVSNNKLSGDIPHWIGNFSVLWLLLMSENYLQGSIPVQLGNL 397
+ GL ++L VL +++ + + S L L
Sbjct: 358 VRELCQGLGQPGSVLRVLWLADCD--------VSDSSCSSLAAT------------LLAN 397
Query: 398 ESLEFIDISENGLSVSMVSL------SNLSSVKHIYLHNNAIN 434
SL +D+S N L + + ++ + L++ +
Sbjct: 398 HSLRELDLSNNCLGDAGILQLVESVRQPGCLLEQLVLYDIYWS 440
|
| >1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461 | Back alignment and structure |
|---|
Score = 94.3 bits (235), Expect = 6e-21
Identities = 80/420 (19%), Positives = 138/420 (32%), Gaps = 69/420 (16%)
Query: 7 LKQLKILNLGFNFFID----SILPYLNTLTSLTTLNLRYNKIEGSRTKQGICN-LKN--- 58
L+Q +++ L + I L +L LNLR N++ + L+
Sbjct: 27 LQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHC-VLQGLQTPSC 85
Query: 59 -LLELDLSSNNFE----GHLPQCLNNLTHLKVLDISYNQLSGN-----FPSVLTNLTSLE 108
+ +L L + G L L L L+ L +S N L +L LE
Sbjct: 86 KIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLE 145
Query: 109 YLDLSFIDFQ---GTFLINSLANHSKLEVLVLSS---GNDMLQVKTENWL-PTYPLKVLQ 161
L L + L + L + L +S+ ++V + L+ L+
Sbjct: 146 KLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALK 205
Query: 162 LSHCHLNVN-----SSFLLHQHHLKFLDLSHNQL----VGNFPTWLLQNNTGLEVLILWN 212
L C + + + + L+ L L N+L + LL ++ L L +W
Sbjct: 206 LESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWE 265
Query: 213 NSFSGI--------LPRLPNAKYDKLRHLDISTNNFSGK----LPENLGIVFQKLIYLDV 260
+ L + L+ L ++ N + L E L +L L V
Sbjct: 266 CGITAKGCGDLCRVLRAKES-----LKELSLAGNELGDEGARLLCETLLEPGCQLESLWV 320
Query: 261 SKNSFEGNIPYSISEM----KELITLDLSRNNFSGE----LPRSIFSSCLSLETLDLSNN 312
SF S + + L+ L +S N L + + L L L++
Sbjct: 321 KSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADC 380
Query: 313 NF----YGQLFPNFMNLTHLSSLRLNNNHFSGKMADGLLSS-----TLLDVLDVSNNKLS 363
+ L + L L L+NN L+ S LL+ L + + S
Sbjct: 381 DVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGCLLEQLVLYDIYWS 440
|
| >1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461 | Back alignment and structure |
|---|
Score = 91.6 bits (228), Expect = 5e-20
Identities = 83/454 (18%), Positives = 136/454 (29%), Gaps = 99/454 (21%)
Query: 57 KNLLELDLSSNNF-EGHLPQCLNNLTHLKVLDISYNQLS----GNFPSVLTNLTSLEYLD 111
++ LD+ + + L L +V+ + L+ + S L +L L+
Sbjct: 3 LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELN 62
Query: 112 LSFIDFQGTFLINSLANHSKLEVLVLSSGNDMLQVKTENWLPTYPLKVLQLSHCHLNVN- 170
L N L + V + LQ P+ ++ L L +C L
Sbjct: 63 LRS---------NELGDVG---VHCVL---QGLQT------PSCKIQKLSLQNCCLTGAG 101
Query: 171 ----SSFLLHQHHLKFLDLSHNQL----VGNFPTWLLQNNTGLEVLILWNNSFSGI---- 218
SS L L+ L LS N L + LL LE L L S S
Sbjct: 102 CGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEP 161
Query: 219 ----LPRLPNAKYDKLRHLDISTNNFSGK----LPENLGIVFQKLIYLDVSKNSFEGNIP 270
L P+ + L +S N+ + L + L +L L + +
Sbjct: 162 LASVLRAKPD-----FKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNC 216
Query: 271 YSISEM----KELITLDLSRNNFSGE----LPRSIFSSCLSLETLDLSNNNF----YGQL 318
+ + L L L N L + L TL + G L
Sbjct: 217 RDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDL 276
Query: 319 FPNFMNLTHLSSLRLNNNHFSGK----MADGLLS-STLLDVLDVSNNKLSGDIPHWIGNF 373
L L L N + + + LL L+ L V + + +
Sbjct: 277 CRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSV 336
Query: 374 SVLWLLLMSENYLQGSIPVQLGNLESLEFIDISENGLSVSMVSL------SNLSSVKHIY 427
L L + IS N L + V S ++ ++
Sbjct: 337 --------------------LAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLW 376
Query: 428 LHNNAI--NGLIPIA--LLRSSTLLTLDLRDNKF 457
L + + + +A LL + +L LDL +N
Sbjct: 377 LADCDVSDSSCSSLAATLLANHSLRELDLSNNCL 410
|
| >1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461 | Back alignment and structure |
|---|
Score = 63.4 bits (155), Expect = 5e-11
Identities = 66/363 (18%), Positives = 114/363 (31%), Gaps = 65/363 (17%)
Query: 4 FGSLKQLKILNLGFNFFIDSILPYL-----NTLTSLTTLNLRYNKI--EGSRT-KQGICN 55
+L L+ L+L N D+ L L + L L L Y + +
Sbjct: 109 LRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRA 168
Query: 56 LKNLLELDLSSNNFEG----HLPQCL-NNLTHLKVLDISYNQLS----GNFPSVLTNLTS 106
+ EL +S+N+ L Q L ++ L+ L + ++ + ++ + S
Sbjct: 169 KPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKAS 228
Query: 107 LEYLDLSF--IDFQGTFLI--NSLANHSKLEVLVLSSGN----------DMLQVKTENWL 152
L L L + G + L S+L L + +L+ K
Sbjct: 229 LRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKES--- 285
Query: 153 PTYPLKVLQLSHCHLNVN-----SSFLLHQH-HLKFLDLSHNQLVGNFPTWL---LQNNT 203
LK L L+ L LL L+ L + + L N
Sbjct: 286 ----LKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNR 341
Query: 204 GLEVLILWNNSF--SGILP-----RLPNAKYDKLRHLDISTNNFSGKLPENLGIVFQK-- 254
L L + NN +G+ P + LR L ++ + S +L
Sbjct: 342 FLLELQISNNRLEDAGVRELCQGLGQPGSV---LRVLWLADCDVSDSSCSSLAATLLANH 398
Query: 255 -LIYLDVSKNSFEGNIPYSISEMKE-----LITLDLSRNNFSGELPRSIFSSCLSLETLD 308
L LD+S N + E L L L +S E+ + + +L
Sbjct: 399 SLRELDLSNNCLGDAGILQLVESVRQPGCLLEQLVLYDIYWSEEMEDRLQALEKDKPSLR 458
Query: 309 LSN 311
+ +
Sbjct: 459 VIS 461
|
| >2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306 | Back alignment and structure |
|---|
Score = 91.2 bits (227), Expect = 1e-20
Identities = 56/219 (25%), Positives = 89/219 (40%), Gaps = 7/219 (3%)
Query: 2 DSFGSLKQLKILNLGFNF--FIDSILPYLNTLTSLTTLNLRYNKIEGSRTKQGICNLKNL 59
F L QL L+L N F TSL L+L +N + + L+ L
Sbjct: 46 GVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSS--NFLGLEQL 103
Query: 60 LELDLSSNNFEGHLPQCL-NNLTHLKVLDISYNQLSGNFPSVLTNLTSLEYLDLSFIDFQ 118
LD +N + + +L +L LDIS+ F + L+SLE L ++ FQ
Sbjct: 104 EHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQ 163
Query: 119 GTFLINSLANHSKLEVLVLSSGNDMLQVKTENWLPTYPLKVLQLSHCHLN-VNSSFLLHQ 177
FL + L L L S + Q+ + L+VL +SH + +++
Sbjct: 164 ENFLPDIFTELRNLTFLDL-SQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCL 222
Query: 178 HHLKFLDLSHNQLVGNFPTWLLQNNTGLEVLILWNNSFS 216
+ L+ LD S N ++ + L + L L L N F+
Sbjct: 223 NSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFA 261
|
| >2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306 | Back alignment and structure |
|---|
Score = 89.3 bits (222), Expect = 7e-20
Identities = 62/284 (21%), Positives = 101/284 (35%), Gaps = 38/284 (13%)
Query: 61 ELDLSSNNFEGHLPQCLNNLTHLKVLDISYNQLSGNFPSVLTNLTSLEYLDLSFIDFQGT 120
E+ +S +P + + L++ N+L V LT L L LS
Sbjct: 11 EIRCNSKGLT-SVPTGI--PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLS------- 60
Query: 121 FLINSLANHSKLEVLVLSSGNDMLQVKTENWLPTYPLKVLQLSHCHLNVNSSFLLHQHHL 180
+ L S + T LK L LS + SS L L
Sbjct: 61 --------SNGLSFKGCCSQ---------SDFGTTSLKYLDLSFNGVITMSSNFLGLEQL 103
Query: 181 KFLDLSHNQLVGNFPTWLLQNNTGLEVLILWNNSFS----GILPRLPNAKYDKLRHLDIS 236
+ LD H+ L + + L L + + GI L + L L ++
Sbjct: 104 EHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSS-----LEVLKMA 158
Query: 237 TNNFSGKLPENLGIVFQKLIYLDVSKNSFEGNIPYSISEMKELITLDLSRNNFSGELPRS 296
N+F ++ + L +LD+S+ E P + + + L L++S NNF L
Sbjct: 159 GNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFF-SLDTF 217
Query: 297 IFSSCLSLETLDLSNNNFYGQLFPNFMNL-THLSSLRLNNNHFS 339
+ SL+ LD S N+ + + L+ L L N F+
Sbjct: 218 PYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFA 261
|
| >2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306 | Back alignment and structure |
|---|
Score = 88.1 bits (219), Expect = 1e-19
Identities = 55/258 (21%), Positives = 96/258 (37%), Gaps = 12/258 (4%)
Query: 231 RHLDISTNNFSGKLPENLGIVFQKLIYLDVSKNSFEGNIPYSISEMKELITLDLSRNNFS 290
+ ++ + +P + L++ N + ++ +L L LS N S
Sbjct: 10 TEIRCNSKGLT-SVPTGI---PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLS 65
Query: 291 -GELPRSIFSSCLSLETLDLSNNNFYGQLFPNFMNLTHLSSLRLNNNHFSGKMADGLLSS 349
SL+ LDLS N + NF+ L L L +++ + S
Sbjct: 66 FKGCCSQSDFGTTSLKYLDLSFNGV-ITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLS 124
Query: 350 -TLLDVLDVSNNKLSGDIPHWIGNFSVLWLLLMSENYLQGSIPVQ-LGNLESLEFIDISE 407
L LD+S+ S L +L M+ N Q + L +L F+D+S+
Sbjct: 125 LRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQ 184
Query: 408 NGL-SVSMVSLSNLSSVKHIYLHNNAINGLIPIALLRSSTLLTLDLRDNKFFGRIPHQI- 465
L +S + ++LSS++ + + +N L ++L LD N Q
Sbjct: 185 CQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNH-IMTSKKQEL 243
Query: 466 -NELSNLHFLLLRGNSLQ 482
+ S+L FL L N
Sbjct: 244 QHFPSSLAFLNLTQNDFA 261
|
| >2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306 | Back alignment and structure |
|---|
Score = 83.5 bits (207), Expect = 5e-18
Identities = 68/289 (23%), Positives = 98/289 (33%), Gaps = 56/289 (19%)
Query: 29 NTLTSLTTLNLRYNKIEGSRTKQGICNLKNLLELDLSSNN--FEGHLPQCLNNLTHLKVL 86
+S T L L NK++ S L L +L LSSN F+G Q T LK L
Sbjct: 25 GIPSSATRLELESNKLQ-SLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYL 83
Query: 87 DISYNQLSGNFPSVLTNLTSLEYLDLSFIDFQGTFLINSLANHSKLEVLVLSSGNDMLQV 146
D+S+N + S L LE+LD HS L+ +
Sbjct: 84 DLSFNGVI-TMSSNFLGLEQLEHLDFQ---------------HSNLKQM----------- 116
Query: 147 KTENWLPTYPLKVLQLSHCHLNVNSSFLLHQHHLKFLDLSHNQLVGNFPTWLLQNNTGLE 206
S L +L +LD+SH + + LE
Sbjct: 117 ----------------------SEFSVFLSLRNLIYLDISHTHTR-VAFNGIFNGLSSLE 153
Query: 207 VLILWNNSFSGILPRLPNAKYDKLRHLDISTNNFSGKLPENLGIVFQKLIYLDVSKNSFE 266
VL + NSF + L LD+S +L L L++S N+F
Sbjct: 154 VLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLE-QLSPTAFNSLSSLQVLNMSHNNFF 212
Query: 267 GNIPYSISEMKELITLDLSRNNFSGELPRSIFSSCL-SLETLDLSNNNF 314
+ + L LD S N+ + SL L+L+ N+F
Sbjct: 213 SLDTFPYKCLNSLQVLDYSLNHIM-TSKKQELQHFPSSLAFLNLTQNDF 260
|
| >2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306 | Back alignment and structure |
|---|
Score = 77.4 bits (191), Expect = 7e-16
Identities = 48/211 (22%), Positives = 77/211 (36%), Gaps = 8/211 (3%)
Query: 157 LKVLQLSHCHL-NVNSSFLLHQHHLKFLDLSHNQL-VGNFPTWLLQNNTGLEVLILWNNS 214
L+L L ++ L L LS N L + T L+ L L N
Sbjct: 30 ATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNG 89
Query: 215 FSGILPRLPNAKYDKLRHLDISTNNFSGKLPENLGIVFQKLIYLDVSKNSFEGNIPYSIS 274
+ ++L HLD +N ++ + + LIYLD+S +
Sbjct: 90 VITMSSNFLGL--EQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFN 147
Query: 275 EMKELITLDLSRNNFSGELPRSIFSSCLSLETLDLSNNNFYGQLFPN--FMNLTHLSSLR 332
+ L L ++ N+F IF+ +L LDLS + F +L+ L L
Sbjct: 148 GLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQL--EQLSPTAFNSLSSLQVLN 205
Query: 333 LNNNHFSGKMADGLLSSTLLDVLDVSNNKLS 363
+++N+F L VLD S N +
Sbjct: 206 MSHNNFFSLDTFPYKCLNSLQVLDYSLNHIM 236
|
| >2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306 | Back alignment and structure |
|---|
Score = 66.6 bits (163), Expect = 3e-12
Identities = 33/115 (28%), Positives = 49/115 (42%), Gaps = 2/115 (1%)
Query: 1 YDSFGSLKQLKILNLGFNFFIDSILPY-LNTLTSLTTLNLRYNKIEGSRTKQGICNLKNL 59
+ F SL+ L L++ N L+SL L + N + + L+NL
Sbjct: 119 FSVFLSLRNLIYLDISHT-HTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNL 177
Query: 60 LELDLSSNNFEGHLPQCLNNLTHLKVLDISYNQLSGNFPSVLTNLTSLEYLDLSF 114
LDLS E P N+L+ L+VL++S+N L SL+ LD S
Sbjct: 178 TFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSL 232
|
| >2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306 | Back alignment and structure |
|---|
Score = 46.2 bits (110), Expect = 1e-05
Identities = 37/211 (17%), Positives = 61/211 (28%), Gaps = 59/211 (27%)
Query: 281 TLDLSRNNFSGELPRSIFSSCLSLETLDLSNNNFYGQLFPN-FMNLTHLSSLRLNNNHFS 339
+ + + +P I SS L+L +N L F LT L+ L L++N S
Sbjct: 11 EIRCNSKGLT-SVPTGIPSS---ATRLELESNKL-QSLPHGVFDKLTQLTKLSLSSNGLS 65
Query: 340 GKMADGLLSSTL--LDVLDVSNNKLSGDIPHWIGNFSVLWLLLMSENYLQGSIPVQLGNL 397
K L LD+S N + ++ L
Sbjct: 66 FKGCCSQSDFGTTSLKYLDLSFNGVI-------------------------TMSSNFLGL 100
Query: 398 ESLEFIDISENGLSV--SMVSLSNLSSVKHIYLHNNAINGLIPIALLRSSTLLTLDLRDN 455
E LE +D + L +L ++ ++ + +
Sbjct: 101 EQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNG------------ 148
Query: 456 KFFGRIPHQINELSNLHFLLLRGNSLQGRIP 486
LS+L L + GNS Q
Sbjct: 149 ------------LSSLEVLKMAGNSFQENFL 167
|
| >2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353 | Back alignment and structure |
|---|
Score = 89.4 bits (222), Expect = 1e-19
Identities = 53/286 (18%), Positives = 110/286 (38%), Gaps = 25/286 (8%)
Query: 32 TSLTTLNLRYNKIEGSRTKQGICNLKNLLELDLSSNNFEGHLPQCLNNLTHLKVLDISYN 91
++ +L+L N+I + NL L L+SN ++L L+ LD+SYN
Sbjct: 52 EAVKSLDLSNNRITYISNSD-LQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYN 110
Query: 92 QLSGNFPSVLTNLTSLEYLDLSFIDFQGTFLINSLANHSKLEVLVLSSGNDMLQVKTENW 151
LS S L+SL +L+L ++ + ++ +KL++L + + + +++ +++
Sbjct: 111 YLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDF 170
Query: 152 LPTYPLKVLQLSHCHLNVNSSFLLHQ-HHLKFLDLSHNQLVGNFPTWLLQNNTGLEVLIL 210
L+ L++ L L ++ L L Q + + + +E L L
Sbjct: 171 AGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHI-LLLEIFVDVTSSVECLEL 229
Query: 211 WNNSFSGI-LPRLPNAKYDKLRHLDISTNNFSGKLPENLGIVFQKLIYLDVSKNSFEGNI 269
+ L + + L + ++ S +
Sbjct: 230 RDTDLDTFHFSELSTGETNSLIKK-------------------FTFRNVKITDESLF-QV 269
Query: 270 PYSISEMKELITLDLSRNNFSGELPRSIFSSCLSLETLDLSNNNFY 315
++++ L+ L+ SRN +P IF SL+ + L N +
Sbjct: 270 MKLLNQISGLLELEFSRNQLKS-VPDGIFDRLTSLQKIWLHTNPWD 314
|
| >2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353 | Back alignment and structure |
|---|
Score = 79.8 bits (197), Expect = 2e-16
Identities = 51/280 (18%), Positives = 108/280 (38%), Gaps = 22/280 (7%)
Query: 180 LKFLDLSHNQLVGNFPTWLLQNNTGLEVLILWNNSFSGILPRLPNAKYDKLRHLDISTNN 239
+K LDLS+N++ LQ L+ L+L +N + I + L HLD+S N
Sbjct: 54 VKSLDLSNNRI-TYISNSDLQRCVNLQALVLTSNGINTIEEDSFS-SLGSLEHLDLSYNY 111
Query: 240 FSGKLPENLGIVFQKLIYLDVSKNSFEGNIPYSI-SEMKELITLDLSRNNFSGELPRSIF 298
S L + L +L++ N ++ S+ S + +L L + + ++ R F
Sbjct: 112 LS-NLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDF 170
Query: 299 SSCLSLETLDLSNNNFYGQLFPN-FMNLTHLSSLRLNNNHFSGKMADGLLSSTLLDVLDV 357
+ LE L++ ++ P ++ ++S L L+ + + ++ ++ L++
Sbjct: 171 AGLTFLEELEIDASDL-QSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLEL 229
Query: 358 SNNKLSGDIPHWIGNFSVLWLLLMSENYLQGSIPVQLGNLESLEFIDISENGLSVSMVSL 417
+ L + L L + + I++ L M L
Sbjct: 230 RDTDLDT----------------FHFSELSTGETNSLIKKFTFRNVKITDESLFQVMKLL 273
Query: 418 SNLSSVKHIYLHNNAINGLIPIALLRSSTLLTLDLRDNKF 457
+ +S + + N + + R ++L + L N +
Sbjct: 274 NQISGLLELEFSRNQLKSVPDGIFDRLTSLQKIWLHTNPW 313
|
| >2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353 | Back alignment and structure |
|---|
Score = 71.7 bits (176), Expect = 8e-14
Identities = 53/246 (21%), Positives = 95/246 (38%), Gaps = 17/246 (6%)
Query: 251 VFQKLIYLDVSKNSFEGNIPYSISEMKELITLDLSRNNFSGELPRSIFSSCLSLETLDLS 310
+ + + LD+S N + L L L+ N + + FSS SLE LDLS
Sbjct: 50 LTEAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGIN-TIEEDSFSSLGSLEHLDLS 108
Query: 311 NNNFYGQLFPN--FMNLTHLSSLRLNNNHFSGKMADGLLSS-TLLDVLDVSNNKLSGDIP 367
N + F L+ L+ L L N + L S T L +L V N I
Sbjct: 109 YNYL--SNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQ 166
Query: 368 H-WIGNFSVLWLLLMSENYLQGSIPVQLGNLESLEFIDISENGL-SVSMVSLSNLSSVKH 425
+ L L + + LQ P L +++++ + + + + + SSV+
Sbjct: 167 RKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVEC 226
Query: 426 IYLHNNAING--------LIPIALLRSSTLLTLDLRDNKFFGRIPHQINELSNLHFLLLR 477
+ L + ++ +L++ T + + D F ++ +N++S L L
Sbjct: 227 LELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLF-QVMKLLNQISGLLELEFS 285
Query: 478 GNSLQG 483
N L+
Sbjct: 286 RNQLKS 291
|
| >2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353 | Back alignment and structure |
|---|
Score = 69.4 bits (170), Expect = 4e-13
Identities = 40/216 (18%), Positives = 77/216 (35%), Gaps = 22/216 (10%)
Query: 2 DSFGSLKQLKILNLGFNFFIDSILPY--LNTLTSLTTLNLRYNKIEGSRTKQGICNLKNL 59
F L L LNL N ++ + LT L L + ++ L L
Sbjct: 118 SWFKPLSSLTFLNLLGNP-YKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFL 176
Query: 60 LELDLSSNNFEGHLPQCLNNLTHLKVLDISYNQLSGNFPSVLTNLTSLEYLDLSFIDFQG 119
EL++ +++ + + P+ L ++ ++ L + Q + +S+E L+L D
Sbjct: 177 EELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDT 236
Query: 120 TFLINSLANHSKLEVLVLSSGNDMLQVKTENWLPTYPLKVLQLSHCHLNVNSSFLLHQHH 179
+ S+L +S + ++++ L L
Sbjct: 237 F-------HFSELSTGETNSLIKKFT-----------FRNVKITDESLFQVMKLLNQISG 278
Query: 180 LKFLDLSHNQLVGNFPTWLLQNNTGLEVLILWNNSF 215
L L+ S NQL + P + T L+ + L N +
Sbjct: 279 LLELEFSRNQLK-SVPDGIFDRLTSLQKIWLHTNPW 313
|
| >2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353 | Back alignment and structure |
|---|
Score = 69.0 bits (169), Expect = 6e-13
Identities = 54/352 (15%), Positives = 100/352 (28%), Gaps = 93/352 (26%)
Query: 81 THLKVLDISYNQLSGNFPSVLTNLTSLEYLDLSFIDFQGTFLINSLANHSKLEVLVLSSG 140
+K LD+S N+++ S L +L+ L L+
Sbjct: 52 EAVKSLDLSNNRITYISNSDLQRCVNLQALVLT--------------------------- 84
Query: 141 NDMLQVKTENWLPTYPLKVLQLSHCHLNVNSSFLLHQHHLKFLDLSHNQLVGNFPTWLLQ 200
N + T L+ LDLS+N L N + +
Sbjct: 85 --------SNGINTIEEDSFS--------------SLGSLEHLDLSYNYLS-NLSSSWFK 121
Query: 201 NNTGLEVLILWNNSFSGILPRLPNAKYDKLRHLDISTNNFSGKLPENLGIVFQKLIYLDV 260
+ L L L N + + + KL+ L + + K+ F L
Sbjct: 122 PLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRK---DFAGL----- 173
Query: 261 SKNSFEGNIPYSISEMKELITLDLSRNNFSGELPRSIFSSCLSLETLDLSNNNFYGQLFP 320
L L++ ++ S ++ L L L
Sbjct: 174 ----------------TFLEELEIDASDLQ-SYEPKSLKSIQNVSHLILHMKQHILLLEI 216
Query: 321 NFMNLTHLSSLRLNNNHFSGKMADGLLSSTLLDVLDVSNNKLSGDIPHWIGNFSVLWLLL 380
+ + L L + ++LS + + +
Sbjct: 217 FVDVTSSVECLELRDTDLDT----------------FHFSELSTGETNSLIKKFTFRNVK 260
Query: 381 MSENYLQGSIPVQLGNLESLEFIDISENGL-SVSMVSLSNLSSVKHIYLHNN 431
+++ L + L + L ++ S N L SV L+S++ I+LH N
Sbjct: 261 ITDESLF-QVMKLLNQISGLLELEFSRNQLKSVPDGIFDRLTSLQKIWLHTN 311
|
| >1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330 | Back alignment and structure |
|---|
Score = 88.9 bits (221), Expect = 1e-19
Identities = 62/316 (19%), Positives = 100/316 (31%), Gaps = 61/316 (19%)
Query: 2 DSFGSLKQLKILNLGFNFFIDSILPY-LNTLTSLTTLNLRYNKIEGSRTKQGICNLKNLL 60
F +LK L L L N I I P L L L L N+++ K K L
Sbjct: 70 GDFKNLKNLHTLILINNK-ISKISPGAFAPLVKLERLYLSKNQLKELPEKM----PKTLQ 124
Query: 61 ELDLSSNNFEGHLPQCLNNLTHLKVLDISYNQLSGNF--PSVLTNLTSLEYLDLSFIDFQ 118
EL + N N L + V+++ N L + + L Y+ ++
Sbjct: 125 ELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIAD---- 180
Query: 119 GTFLINSLANHSKLEVLVLSSGNDMLQVKTENWLPTYPLKVLQLSHCHL-NVNSSFLLHQ 177
++ + + + S L L L + V+++ L
Sbjct: 181 -----TNI---TTIPQGLPPS-----------------LTELHLDGNKITKVDAASLKGL 215
Query: 178 HHLKFLDLSHNQLVGNFPTWLLQNNTGLEVLILWNNSFSGILPRLPNAKYDKLRHLDIST 237
++L L LS N + L N L L L NN + L + KY ++ + +
Sbjct: 216 NNLAKLGLSFNSI-SAVDNGSLANTPHLRELHLNNNKLVKVPGGLADHKY--IQVVYLHN 272
Query: 238 NNFSGKLPENLGIVFQKLIYLDVSKNSFEGNIPYSISEMKELITLDLSRNNFS-GELPRS 296
NN S + N F P ++ + L N E+ S
Sbjct: 273 NNIS-----------------AIGSNDFCP--PGYNTKKASYSGVSLFSNPVQYWEIQPS 313
Query: 297 IFSSCLSLETLDLSNN 312
F + L N
Sbjct: 314 TFRCVYVRAAVQLGNY 329
|
| >1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330 | Back alignment and structure |
|---|
Score = 88.5 bits (220), Expect = 1e-19
Identities = 55/292 (18%), Positives = 105/292 (35%), Gaps = 26/292 (8%)
Query: 57 KNLLELDLSSNNFEGHLPQCLNNLTHLKVLDISYNQLSGNFPSVLTNLTSLEYLDLSFID 116
+ LDL +N NL +L L + N++S P L LE L LS
Sbjct: 52 PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKN- 110
Query: 117 FQGTFLINSLANH--SKLEVLVLSSGNDMLQVKTENWLPTYPLKVLQLSHCHL---NVNS 171
+ L L+ L + N++ +V+ + + V++L L + +
Sbjct: 111 -----QLKELPEKMPKTLQELRVHE-NEITKVRKSVFNGLNQMIVVELGTNPLKSSGIEN 164
Query: 172 SFLLHQHHLKFLDLSHNQLVGNFPTWLLQNNTGLEVLILWNNSFSGILPRLPNAKYDKLR 231
L ++ ++ + P L + L L L N + + + L
Sbjct: 165 GAFQGMKKLSYIRIADTNIT-TIPQGLPPS---LTELHLDGNKITKVDAASLK-GLNNLA 219
Query: 232 HLDISTNNFSGKLPENLGIVFQKLIYLDVSKNSFEGNIPYSISEMKELITLDLSRNNFS- 290
L +S N+ S + L L ++ N +P +++ K + + L NN S
Sbjct: 220 KLGLSFNSIS-AVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNISA 277
Query: 291 ----GELPRSIFSSCLSLETLDLSNNNF-YGQLFPN-FMNLTHLSSLRLNNN 336
P + S + L +N Y ++ P+ F + ++++L N
Sbjct: 278 IGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQLGNY 329
|
| >1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330 | Back alignment and structure |
|---|
Score = 88.1 bits (219), Expect = 2e-19
Identities = 62/291 (21%), Positives = 107/291 (36%), Gaps = 26/291 (8%)
Query: 179 HLKFLDLSHNQLVGNFPTWLLQNNTGLEVLILWNNSFSGILPRLPNAKYDKLRHLDISTN 238
LDL +N++ +N L LIL NN S I P A KL L +S N
Sbjct: 53 DTALLDLQNNKIT-EIKDGDFKNLKNLHTLILINNKISKISPGAF-APLVKLERLYLSKN 110
Query: 239 NFSGKLPENLGIVFQKLIYLDVSKNSFEGNIPYSISEMKELITLDLSRNNF-SGELPRSI 297
+LPE + + L L V +N + + ++I ++L N S +
Sbjct: 111 QLK-ELPEKM---PKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGA 166
Query: 298 FSSCLSLETLDLSNNNFYG---QLFPNFMNLTHLSSLRLNNNHFSGKMADGLLSSTLLDV 354
F L + +++ N L P+ L+ L L+ N + A L L
Sbjct: 167 FQGMKKLSYIRIADTNITTIPQGLPPS------LTELHLDGNKITKVDAASLKGLNNLAK 220
Query: 355 LDVSNNKLSGDIPHWIGNFSVLWLLLMSENYLQGSIPVQLGNLESLEFIDISENGLS--- 411
L +S N +S + N L L ++ N L +P L + + ++ + + N +S
Sbjct: 221 LGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNISAIG 279
Query: 412 ----VSMVSLSNLSSVKHIYLHNNAIN--GLIPIALLRSSTLLTLDLRDNK 456
+ +S + L +N + + P + L + K
Sbjct: 280 SNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQLGNYK 330
|
| >1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330 | Back alignment and structure |
|---|
Score = 72.0 bits (177), Expect = 6e-14
Identities = 46/222 (20%), Positives = 88/222 (39%), Gaps = 13/222 (5%)
Query: 269 IPYSISEMKELITLDLSRNNFSGELPRSIFSSCLSLETLDLSNNNFYGQLFPN-FMNLTH 327
+P + + LDL N + E+ F + +L TL L NN ++ P F L
Sbjct: 46 VPKDLPP--DTALLDLQNNKIT-EIKDGDFKNLKNLHTLILINNKI-SKISPGAFAPLVK 101
Query: 328 LSSLRLNNNHFSGKMADGLLSSTLLDVLDVSNNKLSGDIPHWIGNFSVLWLLLMSENYLQ 387
L L L+ N ++ + + + L L V N+++ + + ++ + N L+
Sbjct: 102 LERLYLSKNQLK-ELPEKMPKT--LQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLK 158
Query: 388 GS-IPVQ-LGNLESLEFIDISENGLSVSMVSLSNLSSVKHIYLHNNAINGLIPIALLRSS 445
S I ++ L +I I++ ++ + S+ ++L N I + +L +
Sbjct: 159 SSGIENGAFQGMKKLSYIRIADTNIT--TIPQGLPPSLTELHLDGNKITKVDAASLKGLN 216
Query: 446 TLLTLDLRDNKFFGRIPHQINELSNLHFLLLRGNSLQGRIPN 487
L L L N + +L L L N L ++P
Sbjct: 217 NLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPG 257
|
| >1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454 | Back alignment and structure |
|---|
Score = 90.1 bits (224), Expect = 2e-19
Identities = 86/493 (17%), Positives = 154/493 (31%), Gaps = 85/493 (17%)
Query: 2 DSFGSLKQLKILNLGFNFFIDSILPYLNTLTSLTTLNLRYNKIEGSRT----KQGICNL- 56
++K ++ + + P + LR + G+ +L
Sbjct: 28 VEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLDRQAHELELNNLGLSSLP 87
Query: 57 ---KNLLELDLSSNNFEGHLPQCLNNLTHLKVLDISYNQLSGNFPSVLTNLTSLEYLDLS 113
+L L S N+ LP+ +L L V + + LS P LEYL +S
Sbjct: 88 ELPPHLESLVASCNSLT-ELPELPQSLKSLLVDNNNLKALSDLPPL-------LEYLGVS 139
Query: 114 FIDFQGTFLINSLANHSKLEVLVLSSGNDMLQVKTENWLPTYP-----LKVLQLSHCHLN 168
+ + L N S L+++ + + N L P L+ + + L
Sbjct: 140 NNQLEK---LPELQNSSFLKIIDVDN----------NSLKKLPDLPPSLEFIAAGNNQLE 186
Query: 169 VNSSFLLHQHHLKFLDLSHNQLVGNFPTWLLQNNTGLEVLILWNNSFSGILPRLPNAKYD 228
+ L + +N L L LE ++ NN LP L N
Sbjct: 187 ELPELQ-NLPFLTAIYADNNSL-----KKLPDLPLSLESIVAGNNILE-ELPELQNLP-- 237
Query: 229 KLRHLDISTNNFSGKLPENLGIVFQKLIYLDVSKNSFEGNIPYSISEMKELITLDLSRNN 288
L + N LP+ L L+V N ++P + L + +
Sbjct: 238 FLTTIYADNNLLK-TLPDLPP----SLEALNVRDNYLT-DLPELPQSLTFLDVSENIFSG 291
Query: 289 FSGELPRSIFSSCLSLETLDLSNNNFYGQLFPNFMNLTHLSSLRLNNNHFSGKMADGLLS 348
S P +L L+ S+N ++ L L ++NN L
Sbjct: 292 LSELPP--------NLYYLNASSN----EIRSLCDLPPSLEELNVSNNKLIE------LP 333
Query: 349 STL--LDVLDVSNNKLSGDIPHWIGNFSVLWLLLMSENYLQGSIPVQLGNLESLEFIDIS 406
+ L+ L S N L+ ++P N L + N L+ P ++E L
Sbjct: 334 ALPPRLERLIASFNHLA-EVPELPQNLKQLHV---EYNPLR-EFPDIPESVEDLRM---- 384
Query: 407 ENGLSVSMVSLSNLSSVKHIYLHNNAINGLIPIALLRSSTLLTLDLRDNKFFGRIPHQIN 466
+ L+ NL K +++ N + P ++ L + +
Sbjct: 385 NSHLAEVPELPQNL---KQLHVETNPLREF-PDIP---ESVEDLRMNSERVVDPYEFAHE 437
Query: 467 ELSNLHFLLLRGN 479
L + +
Sbjct: 438 TTDKLEDDVFEHH 450
|
| >1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454 | Back alignment and structure |
|---|
Score = 88.5 bits (220), Expect = 5e-19
Identities = 82/435 (18%), Positives = 142/435 (32%), Gaps = 76/435 (17%)
Query: 53 ICNLKNLLELDLSSNNFEGHLPQCLNNLTHLKVLDISYNQLSGNFPSVLTNLTSLEYLDL 112
+ L E S+N +P N+ ++++ N P + L
Sbjct: 7 NVSNTFLQEPLRHSSNLT-EMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRL 65
Query: 113 SFIDFQGTFLINSLANHSKLEVLVLSSGNDMLQVKTENWLPTYP-----LKVLQLSHCHL 167
+ L L++ L + P L+ L S L
Sbjct: 66 ------------RDCLDRQAHELELNN----------LGLSSLPELPPHLESLVASCNSL 103
Query: 168 NVNSSFLLHQHHLKFLDLSHNQLVGNFPTWLLQNNTGLEVLILWNNSFSGILPRLPNAKY 227
L + + L P LE L + NN LP L N+
Sbjct: 104 TELPELPQSLKSLLVDNNNLKALSDLPP--------LLEYLGVSNNQLEK-LPELQNSS- 153
Query: 228 DKLRHLDISTNNFSGKLPENLGIVFQKLIYLDVSKNSFEGNIPYSISEMKELITLDLSRN 287
L+ +D+ N+ KLP+ L ++ N E +P + + L + N
Sbjct: 154 -FLKIIDVDNNSLK-KLPDLPP----SLEFIAAGNNQLE-ELP-ELQNLPFLTAIYADNN 205
Query: 288 NFSGELPRSIFSSCLSLETLDLSNNNFYGQLFPNFMNLTHLSSLRLNNNHFSGKMADGLL 347
+ + LSLE++ NN + P NL L+++ +NN L
Sbjct: 206 SLK-----KLPDLPLSLESIVAGNNIL--EELPELQNLPFLTTIYADNNLLK--TLPDLP 256
Query: 348 SSTLLDVLDVSNNKLSGDIPHWIGNFSVLWLLLMSENYLQGSIPVQLGNLESLEFIDISE 407
S L+ L+V +N L+ D+P + + L + + L P +L +++ S
Sbjct: 257 PS--LEALNVRDNYLT-DLPELPQSLTFLDVSENIFSGLSELPP-------NLYYLNASS 306
Query: 408 NGLSVSMVSLSNLSSVKHIYLHNNAINGLIPIALLRSSTLLTLDLRDNKFFGRIPHQINE 467
N + +L + + + NN + L P L L N +P
Sbjct: 307 NEIRSLCDLPPSL---EELNVSNNKLIEL-PALP---PRLERLIASFNH-LAEVP---EL 355
Query: 468 LSNLHFLLLRGNSLQ 482
NL L + N L+
Sbjct: 356 PQNLKQLHVEYNPLR 370
|
| >1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454 | Back alignment and structure |
|---|
Score = 88.1 bits (219), Expect = 7e-19
Identities = 80/435 (18%), Positives = 134/435 (30%), Gaps = 76/435 (17%)
Query: 6 SLKQLKILNLGFNFFIDSILPYLNTLTSLTTLNLRYNKIEGSRTKQGICNLKNLLELDLS 65
L+ L N + + +L SL N + L L +S
Sbjct: 89 LPPHLESLVASCNS-LTELPELPQSLKSLLVDNNNLKALSD--------LPPLLEYLGVS 139
Query: 66 SNNFEGHLPQCLNNLTHLKVLDISYNQLSGNFPSVLTNLTSLEYLDLSFIDFQGTFLINS 125
+N E LP+ L N + LK++D+ N L + SLE++ + +
Sbjct: 140 NNQLE-KLPE-LQNSSFLKIIDVDNNSLK----KLPDLPPSLEFIAAGNNQLEE---LPE 190
Query: 126 LANHSKLEVLVLSSGNDMLQVKTENWLPTYP-----LKVLQLSHCHLNVNSSFLLHQHHL 180
L N L + N L P L+ + + L L + L
Sbjct: 191 LQNLPFLTAIYAD----------NNSLKKLPDLPLSLESIVAGNNILEELPE-LQNLPFL 239
Query: 181 KFLDLSHNQLVGNFPTWLLQNNTGLEVLILWNNSFSGILPRLPNAKYDKLRHLDISTNNF 240
+ +N L P LE L + +N + + + L LD+S N F
Sbjct: 240 TTIYADNNLLK-TLPDLP----PSLEALNVRDNYLTDLPELPQS-----LTFLDVSENIF 289
Query: 241 SGKLPENLGIVFQKLIYLDVSKNSFEGNIPYSISEMKELITLDLSRNNFSGELPRSIFSS 300
S L E L YL+ S N I L L++S N + +
Sbjct: 290 S-GLSELPP----NLYYLNASSN----EIRSLCDLPPSLEELNVSNNKLI-----ELPAL 335
Query: 301 CLSLETLDLSNNNFYGQLFPNFMNLTHLSSLRLNNNHFSGKMADGLLSSTLLDVLDVSNN 360
LE L S N+ P +L L + N V D+ N
Sbjct: 336 PPRLERLIASFNHL--AEVPE--LPQNLKQLHVEYNPLRE------FPDIPESVEDLRMN 385
Query: 361 KLSGDIPHWIGNFSVLWLLLMSENYLQGSIPVQLGNLESLEFIDISENGL-SVSMVSLSN 419
++P N L + N L+ P ++E L ++ + +
Sbjct: 386 SHLAEVPELPQNLKQLHV---ETNPLR-EFPDIPESVEDL---RMNSERVVDPYEFAHET 438
Query: 420 LSSVKHIYLHNNAIN 434
++ ++ +
Sbjct: 439 TDKLEDDVFEHHHHH 453
|
| >1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454 | Back alignment and structure |
|---|
Score = 83.5 bits (207), Expect = 2e-17
Identities = 61/337 (18%), Positives = 103/337 (30%), Gaps = 55/337 (16%)
Query: 5 GSLKQLKILNLGFNFFIDSILPYLNTLTSLTTLNLRYNKIEGSRTKQGICNLKNLLELDL 64
L+ + G N LP L L LT + N ++ +L +
Sbjct: 170 DLPPSLEFIAAGNNQL--EELPELQNLPFLTAIYADNNSLKKL-----PDLPLSLESIVA 222
Query: 65 SSNNFEGHLPQCLNNLTHLKVLDISYNQLSGNFPSVLTNLTSLEYLDLSFIDFQGTFLIN 124
+N E LP+ L NL L + N L P + +L +L D T L
Sbjct: 223 GNNILE-ELPE-LQNLPFLTTIYADNNLLK-TLPDLPPSLEALNVRDNYL-----TDLPE 274
Query: 125 SLANHSKLEVLVLSSGNDMLQVKTENWLPTYP--LKVLQLSHCHLNVNSSFLLHQHHLKF 182
+ + L+V + L P L L S + L+
Sbjct: 275 LPQSLTFLDVSENIF----------SGLSELPPNLYYLNASSNEIRSLCDLP---PSLEE 321
Query: 183 LDLSHNQLVGNFPTWLLQNNTGLEVLILWNNSFSGILPRLPNAKYDKLRHLDISTNNFSG 242
L++S+N+L L LE LI N + + N L+ L + N
Sbjct: 322 LNVSNNKL-----IELPALPPRLERLIASFNHLAEVPELPQN-----LKQLHVEYNPLR- 370
Query: 243 KLPENLGIVFQKLIYLDVSKNSFEGNIPYSISEMKELITLDLSRNNFSGELPRSIFSSCL 302
+ P+ + L ++ ++ + L L + N E P
Sbjct: 371 EFPDIPE----SVEDLRMN-----SHLAEVPELPQNLKQLHVETNPLR-EFPDIPE---- 416
Query: 303 SLETLDLSNNNFYGQLFPNFMNLTHLSSLRLNNNHFS 339
S+E L +++ L ++H
Sbjct: 417 SVEDLRMNSERVVDPYEFAHETTDKLEDDVFEHHHHH 453
|
| >1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454 | Back alignment and structure |
|---|
Score = 56.5 bits (137), Expect = 8e-09
Identities = 58/292 (19%), Positives = 97/292 (33%), Gaps = 54/292 (18%)
Query: 4 FGSLKQLKILNLGFNFFIDSILPYLNTLTSLTTLNLRYNKIEGSRTKQGICNLKNLLELD 63
L+ + G N LP L L LTT+ N + +L+ L D
Sbjct: 211 PDLPLSLESIVAGNNIL--EELPELQNLPFLTTIYADNNLL--KTLPDLPPSLEALNVRD 266
Query: 64 LSSNNFEGHLPQCLNNLTHLKVLDISYNQLSGNFPSVLTNLTSLEYLDLSFIDFQGTFLI 123
+ LP+ +LT L V + ++ LS +L YL+ S + L
Sbjct: 267 NYLTD----LPELPQSLTFLDVSENIFSGLS-------ELPPNLYYLNAS--SNEIRSLC 313
Query: 124 NSLANHSKLEVLVLSSGNDMLQVKTENWLPTYP-----LKVLQLSHCHLNVNSSFLLHQH 178
+ + LE L +S N L P L+ L S HL
Sbjct: 314 DLPPS---LEELNVS----------NNKLIELPALPPRLERLIASFNHLAEVPELP---Q 357
Query: 179 HLKFLDLSHNQLVGNFPTWLLQNNTGLEVLILWNNSFSGILPRLPNAKYDKLRHLDISTN 238
+LK L + +N L FP +E L + ++ +P LP L+ L + TN
Sbjct: 358 NLKQLHVEYNPLR-EFPDIP----ESVEDLRMNSHLAE--VPELPQ----NLKQLHVETN 406
Query: 239 NFSGKLPENLGIVFQKLIYLDVSKNSFEGNIPYSISEMKELITLDLSRNNFS 290
+ P+ + L ++ ++ +L ++
Sbjct: 407 PLR-EFPDIPE----SVEDLRMNSERVVDPYEFAHETTDKLEDDVFEHHHHH 453
|
| >3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452 | Back alignment and structure |
|---|
Score = 89.4 bits (222), Expect = 3e-19
Identities = 49/238 (20%), Positives = 86/238 (36%), Gaps = 14/238 (5%)
Query: 32 TSLTTLNLRYNKIEGSRTKQGICNLKNLLELDLSSNNFEGHLPQCLNNLTHLKVLDISYN 91
++ LNL N I+ + +L +L L L N+ N L L L++ N
Sbjct: 75 SNTRYLNLMENNIQMIQADT-FRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDN 133
Query: 92 QLSGNFPSVLTNLTSLEYLDLSFIDFQGTFLINSLANHSKLEVLVLSSGNDMLQVKTENW 151
L+ L+ L L L + + + L L L + + +
Sbjct: 134 WLTVIPSGAFEYLSKLRELWLRNNPIE-SIPSYAFNRVPSLMRLDLGELKKLEYISEGAF 192
Query: 152 LPTYPLKVLQLSHCHLNVNSSFLLHQHHLKFLDLSHNQLVGNFPTWLLQNNTGLEVLILW 211
+ LK L L C++ + L+ L++S N + L+ L +
Sbjct: 193 EGLFNLKYLNLGMCNIKDMPNL-TPLVGLEELEMSGNHFP-EIRPGSFHGLSSLKKLWVM 250
Query: 212 NNSFSGILPR----LPNAKYDKLRHLDISTNNFSGKLPENLGIVFQKLIYLDVSKNSF 265
N+ S I L + L L+++ NN S LP +L + L+ L + N +
Sbjct: 251 NSQVSLIERNAFDGLAS-----LVELNLAHNNLS-SLPHDLFTPLRYLVELHLHHNPW 302
|
| >3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452 | Back alignment and structure |
|---|
Score = 87.5 bits (217), Expect = 1e-18
Identities = 53/235 (22%), Positives = 88/235 (37%), Gaps = 15/235 (6%)
Query: 179 HLKFLDLSHNQLVGNFPTWLLQNNTGLEVLILWNNSFSGILPR----LPNAKYDKLRHLD 234
+ ++L+L N + ++ LEVL L NS I L + L L+
Sbjct: 76 NTRYLNLMENNIQ-MIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLAS-----LNTLE 129
Query: 235 ISTNNFSGKLPENLGIVFQKLIYLDVSKNSFEGNIPYSISEMKELITLDLSRNNFSGELP 294
+ N + +P KL L + N E Y+ + + L+ LDL +
Sbjct: 130 LFDNWLT-VIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYIS 188
Query: 295 RSIFSSCLSLETLDLSNNNFYGQLFPNFMNLTHLSSLRLNNNHFSGKMADGLLSSTLLDV 354
F +L+ L+L N + PN L L L ++ NHF + L
Sbjct: 189 EGAFEGLFNLKYLNLGMCNI--KDMPNLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKK 246
Query: 355 LDVSNNKLSGDIPHWIGNFSVLWLLLMSENYLQGSIPVQ-LGNLESLEFIDISEN 408
L V N+++S + + L L ++ N L S+P L L + + N
Sbjct: 247 LWVMNSQVSLIERNAFDGLASLVELNLAHNNLS-SLPHDLFTPLRYLVELHLHHN 300
|
| >3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452 | Back alignment and structure |
|---|
Score = 82.9 bits (205), Expect = 3e-17
Identities = 46/220 (20%), Positives = 87/220 (39%), Gaps = 15/220 (6%)
Query: 269 IPYSISEMKELITLDLSRNNFSGELPRSIFSSCLSLETLDLSNNNFYGQLFPN-FMNLTH 327
+P I L+L NN + F LE L L N+ Q+ F L
Sbjct: 69 VPQGIPS--NTRYLNLMENNIQ-MIQADTFRHLHHLEVLQLGRNSI-RQIEVGAFNGLAS 124
Query: 328 LSSLRLNNNHFSGKMADGLLSSTLLDVLDVSNNKLSGDIPHWIGNFSVL----WLLLMSE 383
L++L L +N + + + L L + NN + IP F+ + L L
Sbjct: 125 LNTLELFDNWLTVIPSGAFEYLSKLRELWLRNNPIE-SIPS--YAFNRVPSLMRLDLGEL 181
Query: 384 NYLQGSIPVQ-LGNLESLEFIDISENGLSVSMVSLSNLSSVKHIYLHNNAINGLIPIALL 442
L+ I L +L+++++ + M +L+ L ++ + + N + P +
Sbjct: 182 KKLE-YISEGAFEGLFNLKYLNLGMCNIK-DMPNLTPLVGLEELEMSGNHFPEIRPGSFH 239
Query: 443 RSSTLLTLDLRDNKFFGRIPHQINELSNLHFLLLRGNSLQ 482
S+L L + +++ + + L++L L L N+L
Sbjct: 240 GLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLS 279
|
| >3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452 | Back alignment and structure |
|---|
Score = 82.1 bits (203), Expect = 6e-17
Identities = 57/217 (26%), Positives = 88/217 (40%), Gaps = 10/217 (4%)
Query: 2 DSFGSLKQLKILNLGFNFFIDSILPY-LNTLTSLTTLNLRYNKIEGSRTKQGICNLKNLL 60
D+F L L++L LG N I I N L SL TL L N + L L
Sbjct: 93 DTFRHLHHLEVLQLGRNS-IRQIEVGAFNGLASLNTLELFDNWLT-VIPSGAFEYLSKLR 150
Query: 61 ELDLSSNNFEGHLPQCLNNLTHLKVLDIS-YNQLSGNFPSVLTNLTSLEYLDLSFIDFQG 119
EL L +N E N + L LD+ +L L +L+YL+L + +
Sbjct: 151 ELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKD 210
Query: 120 TFLINSLANHSKLEVLVLSSGNDMLQVKTENWLPTYPLKVLQLSHCHL-NVNSSFLLHQH 178
+ +L LE L + SGN +++ ++ LK L + + + + +
Sbjct: 211 ---MPNLTPLVGLEELEM-SGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLA 266
Query: 179 HLKFLDLSHNQLVGNFPTWLLQNNTGLEVLILWNNSF 215
L L+L+HN L + P L L L L +N +
Sbjct: 267 SLVELNLAHNNLS-SLPHDLFTPLRYLVELHLHHNPW 302
|
| >3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452 | Back alignment and structure |
|---|
Score = 81.7 bits (202), Expect = 8e-17
Identities = 62/264 (23%), Positives = 96/264 (36%), Gaps = 44/264 (16%)
Query: 58 NLLELDLSSNNFEGHLPQCLNNLTHLKVLDISYNQLSGNFPSVLTNLTSLEYLDLS---- 113
N L+L NN + +L HL+VL + N + L SL L+L
Sbjct: 76 NTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWL 135
Query: 114 -FIDFQGTFLINSLANHSKLEVLVLSSGNDMLQVKTENWLPTYPLKVLQLSHC-HL-NVN 170
I G F SKL L L N + + + + L L L L ++
Sbjct: 136 TVIP-SGAF-----EYLSKLRELWL-RNNPIESIPSYAFNRVPSLMRLDLGELKKLEYIS 188
Query: 171 SSFLLHQHHLKFLDLSHNQLVGNFPTWLLQNNTGLEVLILWNNSFSGILPRLPNAKYDKL 230
+LK+L+L + + P L GLE L + N F I P L
Sbjct: 189 EGAFEGLFNLKYLNLGMCNIK-DMPN--LTPLVGLEELEMSGNHFPEIRPGSF-HGLSSL 244
Query: 231 RHLDISTNNFSGKLPENLGIVFQKLIYLDVSKNSFEGNIPYSISEMKELITLDLSRNNFS 290
+ L + + S + +N+F+G + L+ L+L+ NN S
Sbjct: 245 KKLWVMNSQVS-----------------LIERNAFDG--------LASLVELNLAHNNLS 279
Query: 291 GELPRSIFSSCLSLETLDLSNNNF 314
LP +F+ L L L +N +
Sbjct: 280 -SLPHDLFTPLRYLVELHLHHNPW 302
|
| >3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440 | Back alignment and structure |
|---|
Score = 86.3 bits (214), Expect = 2e-18
Identities = 50/238 (21%), Positives = 88/238 (36%), Gaps = 14/238 (5%)
Query: 32 TSLTTLNLRYNKIEGSRTKQGICNLKNLLELDLSSNNFEGHLPQCLNNLTHLKVLDISYN 91
T+ LNL N+I+ + +L++L L LS N+ N L +L L++ N
Sbjct: 64 TNTRLLNLHENQIQIIKVNS-FKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDN 122
Query: 92 QLSGNFPSVLTNLTSLEYLDLSFIDFQGTFLINSLANHSKLEVLVLSSGNDMLQVKTENW 151
+L+ L+ L+ L L + + + L L L + + +
Sbjct: 123 RLTTIPNGAFVYLSKLKELWLRNNPIE-SIPSYAFNRIPSLRRLDLGELKRLSYISEGAF 181
Query: 152 LPTYPLKVLQLSHCHLNVNSSFLLHQHHLKFLDLSHNQLVGNFPTWLLQNNTGLEVLILW 211
L+ L L+ C+L + L LDLS N L Q L+ L +
Sbjct: 182 EGLSNLRYLNLAMCNLREIPNL-TPLIKLDELDLSGNHLS-AIRPGSFQGLMHLQKLWMI 239
Query: 212 NNSFSGILPR----LPNAKYDKLRHLDISTNNFSGKLPENLGIVFQKLIYLDVSKNSF 265
+ I L + L ++++ NN + LP +L L + + N +
Sbjct: 240 QSQIQVIERNAFDNLQS-----LVEINLAHNNLT-LLPHDLFTPLHHLERIHLHHNPW 291
|
| >3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440 | Back alignment and structure |
|---|
Score = 86.0 bits (213), Expect = 3e-18
Identities = 51/234 (21%), Positives = 79/234 (33%), Gaps = 9/234 (3%)
Query: 9 QLKILNLGFNFFIDSILPY-LNTLTSLTTLNLRYNKIEGSRTKQGICNLKNLLELDLSSN 67
++LNL N I I L L L L N I + L NL L+L N
Sbjct: 65 NTRLLNLHENQ-IQIIKVNSFKHLRHLEILQLSRNHIR-TIEIGAFNGLANLNTLELFDN 122
Query: 68 NFEGHLPQCLNNLTHLKVLDISYNQLSGNFPSVLTNLTSLEYLDLSFIDFQGTFLINSLA 127
L+ LK L + N + + SL LDL + +
Sbjct: 123 RLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFE 182
Query: 128 NHSKLEVLVLSSGNDMLQVKTENWLPTYPLKVLQLSHCHL-NVNSSFLLHQHHLKFLDLS 186
S L L L + ++ ++ L L L LS HL + HL+ L +
Sbjct: 183 GLSNLRYLNL-AMCNLREIPNLTPLIK--LDELDLSGNHLSAIRPGSFQGLMHLQKLWMI 239
Query: 187 HNQLVGNFPTWLLQNNTGLEVLILWNNSFSGILPRLPNAKYDKLRHLDISTNNF 240
+Q+ N L + L +N+ + +LP L + + N +
Sbjct: 240 QSQIQ-VIERNAFDNLQSLVEINLAHNNLT-LLPHDLFTPLHHLERIHLHHNPW 291
|
| >3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440 | Back alignment and structure |
|---|
Score = 86.0 bits (213), Expect = 3e-18
Identities = 53/259 (20%), Positives = 99/259 (38%), Gaps = 11/259 (4%)
Query: 227 YDKLRHLDISTNNFSGKLPENLGIVFQKLIYLDVSKNSFEGNIPYSISEMKELITLDLSR 286
++ + N ++P+ + L++ +N + S ++ L L LSR
Sbjct: 42 SNQFSKVICVRKNLR-EVPDGI---STNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSR 97
Query: 287 NNFSGELPRSIFSSCLSLETLDLSNNNFYGQLFPNFMNLTHLSSLRLNNNHFSGKMADGL 346
N+ + F+ +L TL+L +N F+ L+ L L L NN +
Sbjct: 98 NHIR-TIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWLRNNPIE-SIPSYA 155
Query: 347 LSS-TLLDVLDVS-NNKLSGDIPHWIGNFSVLWLLLMSENYLQGSIPVQLGNLESLEFID 404
+ L LD+ +LS S L L ++ L+ IP L L L+ +D
Sbjct: 156 FNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLR-EIP-NLTPLIKLDELD 213
Query: 405 ISENGL-SVSMVSLSNLSSVKHIYLHNNAINGLIPIALLRSSTLLTLDLRDNKFFGRIPH 463
+S N L ++ S L ++ +++ + I + A +L+ ++L N
Sbjct: 214 LSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHD 273
Query: 464 QINELSNLHFLLLRGNSLQ 482
L +L + L N
Sbjct: 274 LFTPLHHLERIHLHHNPWN 292
|
| >3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440 | Back alignment and structure |
|---|
Score = 80.6 bits (199), Expect = 2e-16
Identities = 58/218 (26%), Positives = 91/218 (41%), Gaps = 12/218 (5%)
Query: 2 DSFGSLKQLKILNLGFNFFIDSILPY-LNTLTSLTTLNLRYNKIEGSRTKQGICNLKNLL 60
+SF L+ L+IL L N I +I N L +L TL L N++ + L L
Sbjct: 82 NSFKHLRHLEILQLSRN-HIRTIEIGAFNGLANLNTLELFDNRLT-TIPNGAFVYLSKLK 139
Query: 61 ELDLSSNNFEGHLPQCLNNLTHLKVLDIS-YNQLSGNFPSVLTNLTSLEYLDLSFIDFQG 119
EL L +N E N + L+ LD+ +LS L++L YL+L+ + +
Sbjct: 140 ELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLRE 199
Query: 120 TFLINSLANHSKLEVLVLSSGNDMLQVKTENWLPTYP-LKVLQLSHCHL-NVNSSFLLHQ 177
I +L KL+ L L SGN L L+ L + + + + +
Sbjct: 200 ---IPNLTPLIKLDELDL-SGNH-LSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNL 254
Query: 178 HHLKFLDLSHNQLVGNFPTWLLQNNTGLEVLILWNNSF 215
L ++L+HN L P L LE + L +N +
Sbjct: 255 QSLVEINLAHNNLT-LLPHDLFTPLHHLERIHLHHNPW 291
|
| >3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440 | Back alignment and structure |
|---|
Score = 79.8 bits (197), Expect = 3e-16
Identities = 52/260 (20%), Positives = 102/260 (39%), Gaps = 15/260 (5%)
Query: 58 NLLELDLSSNNFEGHLPQCLNNLTHLKVLDISYNQLSGNFPSVLTNLTSLEYLDLSFIDF 117
++ N +P ++ T+ ++L++ NQ+ + +L LE L LS
Sbjct: 44 QFSKVICVRKNLR-EVPDGIS--TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHI 100
Query: 118 QGTFLINSLANHSKLEVLVLSSGNDMLQVKTENWLPTYPLKVLQLSHCHL-NVNSSFLLH 176
+ T I + + L L L N + + ++ LK L L + + ++ S
Sbjct: 101 R-TIEIGAFNGLANLNTLELFD-NRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNR 158
Query: 177 QHHLKFLDLSHNQLVGNFPTWLLQNNTGLEVLILWNNSFSGI--LPRLPNAKYDKLRHLD 234
L+ LDL + + + + L L L + I L L L LD
Sbjct: 159 IPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLREIPNLTPLIK-----LDELD 213
Query: 235 ISTNNFSGKLPENLGIVFQKLIYLDVSKNSFEGNIPYSISEMKELITLDLSRNNFSGELP 294
+S N+ S + L L + ++ + + ++ L+ ++L+ NN + LP
Sbjct: 214 LSGNHLS-AIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLT-LLP 271
Query: 295 RSIFSSCLSLETLDLSNNNF 314
+F+ LE + L +N +
Sbjct: 272 HDLFTPLHHLERIHLHHNPW 291
|
| >3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571 | Back alignment and structure |
|---|
Score = 85.0 bits (210), Expect = 1e-17
Identities = 57/301 (18%), Positives = 101/301 (33%), Gaps = 51/301 (16%)
Query: 183 LDLSHNQLVGNFPTWLLQNNTGLEVLILWNNSFSGILPRLPNAKYDKLRHLDISTNNFSG 242
+ +N + E L + + + L ++ L ++ N S
Sbjct: 15 QNSFYNTIS-GTYADYFSAWDKWEKQALPGENRNEAVSLLKECLINQFSELQLNRLNLS- 72
Query: 243 KLPENLGIVFQKLIYLDVSKNSFEGNIPYSISEMKELITLDLSRNNFSGELPRSIFSSCL 302
LP+NL ++ L++++N+ ++P + L LD N S LP
Sbjct: 73 SLPDNLP---PQITVLEITQNALI-SLPELPAS---LEYLDACDNRLS-TLPELP----A 120
Query: 303 SLETLDLSNNNFYGQLFPNFMNLTHLSSLRLNNNHFSGKMADGLLSSTL--LDVLDVSNN 360
SL+ LD+ NN + P L + +NN + +L L+VL V NN
Sbjct: 121 SLKHLDVDNNQL--TMLPE--LPALLEYINADNNQLT------MLPELPTSLEVLSVRNN 170
Query: 361 KLSGDIPHWIGNFSVLWLLLMSENYLQGSIPVQLGNLESLEFIDISENGLSVSMVSLSNL 420
+L+ +P + L + S N L+ S+P E
Sbjct: 171 QLT-FLPELPESLEALDV---STNLLE-SLPAVPVRNHHSE------------------- 206
Query: 421 SSVKHIYLHNNAINGLIPIALLRSSTLLTLDLRDNKFFGRIPHQINELSNLHFLLLRGNS 480
+ N I + P +L T+ L DN RI +++ +
Sbjct: 207 ETEIFFRCRENRITHI-PENILSLDPTCTIILEDNPLSSRIRESLSQQTAQPDYHGPRIY 265
Query: 481 L 481
Sbjct: 266 F 266
|
| >3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571 | Back alignment and structure |
|---|
Score = 80.4 bits (198), Expect = 3e-16
Identities = 48/254 (18%), Positives = 81/254 (31%), Gaps = 34/254 (13%)
Query: 236 STNNFSGKLPENLGIVFQKLIYLDVSKNSFEGNIPYSISE--MKELITLDLSRNNFSGEL 293
S N + + K + + + E + + L L+R N S L
Sbjct: 17 SFYNTISGTYADYFSAWDKWEKQALPGENRN-EAVSLLKECLINQFSELQLNRLNLS-SL 74
Query: 294 PRSIFSSCLSLETLDLSNNNFYGQLFPNFMNLTHLSSLRLNNNHFSGKMADGLLSSTL-- 351
P ++ + L+++ N P L L +N S L
Sbjct: 75 PDNLPPQ---ITVLEITQNAL--ISLPE--LPASLEYLDACDNRLST------LPELPAS 121
Query: 352 LDVLDVSNNKLSGDIPHWIGNFSVLWLLLMSENYLQGSIPVQLGNLESLEFIDISENGLS 411
L LDV NN+L+ +P + N L +P +LE L + N L+
Sbjct: 122 LKHLDVDNNQLT-MLPELPALLEYINA---DNNQLT-MLPELPTSLEVL---SVRNNQLT 173
Query: 412 VSMVSLSNLSSVKHIYLHNNAINGL---IPIALLRSSTLLTLDLRDNKFFGRIPHQINEL 468
+L + + + N + L T + R+N+ IP I L
Sbjct: 174 FLPELPESL---EALDVSTNLLESLPAVPVRNHHSEETEIFFRCRENRI-THIPENILSL 229
Query: 469 SNLHFLLLRGNSLQ 482
++L N L
Sbjct: 230 DPTCTIILEDNPLS 243
|
| >3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571 | Back alignment and structure |
|---|
Score = 77.7 bits (191), Expect = 2e-15
Identities = 65/291 (22%), Positives = 97/291 (33%), Gaps = 56/291 (19%)
Query: 27 YLNTLTSLTTLNLRYNKIEGSRTKQGICNLKNLLELDLSSNNFEGHLPQCLNNLTHLKVL 86
Y + L + + C + EL L+ N LP L + VL
Sbjct: 29 YFSAWDKWEKQALPGENRNEAVSLLKECLINQFSELQLNRLNLS-SLPDNL--PPQITVL 85
Query: 87 DISYNQLSGNFPSVLTNLTSLEYLDLSFIDFQGTFLINSLANHSKLEVLVLSSGNDMLQV 146
+I+ N L S+ SLEYLD ++L L +
Sbjct: 86 EITQNALI----SLPELPASLEYLDAC---------------DNRLSTLPELPAS----- 121
Query: 147 KTENWLPTYPLKVLQLSHCHLNVNSSFLLHQHHLKFLDLSHNQLVGNFPTWLLQNNTGLE 206
LK L + + L + L++++ +NQL T L + T LE
Sbjct: 122 ----------LKHLDVDNNQLTMLPELP---ALLEYINADNNQL-----TMLPELPTSLE 163
Query: 207 VLILWNNSFSGILPRLPNAKYDKLRHLDISTNNFSGKLPENLGIVFQ---KLIYLDVSKN 263
VL + NN + LP LP + L LD+STN LP I+ +N
Sbjct: 164 VLSVRNNQLTF-LPELP----ESLEALDVSTNLLES-LPAVPVRNHHSEETEIFFRCREN 217
Query: 264 SFEGNIPYSISEMKELITLDLSRNNFSGELPRSIFSSCLSLETLDLSNNNF 314
+IP +I + T+ L N S R S + F
Sbjct: 218 RIT-HIPENILSLDPTCTIILEDNPLS-SRIRESLSQQTAQPDYHGPRIYF 266
|
| >3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571 | Back alignment and structure |
|---|
Score = 73.9 bits (181), Expect = 4e-14
Identities = 50/260 (19%), Positives = 80/260 (30%), Gaps = 33/260 (12%)
Query: 157 LKVLQLSHCHLNVNSSFL--LHQHHLKFLDLSHNQLVGNFPTWLLQNNTGLEVLILWNNS 214
+ L + N S L + L L+ L + P L + VL + N+
Sbjct: 36 WEKQALPGENRNEAVSLLKECLINQFSELQLNRLNLS-SLPDNLPPQ---ITVLEITQNA 91
Query: 215 FSGILPRLPNAKYDKLRHLDISTNNFSGKLPENLGIVFQKLIYLDVSKNSFEGNIPYSIS 274
+ + L +LD N S LPE L +LDV N +P +
Sbjct: 92 LISLPELPAS-----LEYLDACDNRLS-TLPELPA----SLKHLDVDNNQLT-MLPELPA 140
Query: 275 EMKELITLDLSRNNFSGELPRSIFSSCLSLETLDLSNNNFYGQLFPNFMNLTHLSSLRLN 334
L ++ N + LP SLE L + NN P L +L ++
Sbjct: 141 L---LEYINADNNQLT-MLPELP----TSLEVLSVRNNQL--TFLPEL--PESLEALDVS 188
Query: 335 NNHFSG---KMADGLLSSTLLDVLDVSNNKLSGDIPHWIGNFSVLWLLLMSENYLQGSIP 391
N S N+++ IP I + +++ +N L I
Sbjct: 189 TNLLESLPAVPVRNHHSEETEIFFRCRENRIT-HIPENILSLDPTCTIILEDNPLSSRIR 247
Query: 392 VQLGNLESLEFIDISENGLS 411
L + S
Sbjct: 248 ESLSQQTAQPDYHGPRIYFS 267
|
| >3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571 | Back alignment and structure |
|---|
Score = 55.0 bits (132), Expect = 3e-08
Identities = 22/116 (18%), Positives = 39/116 (33%), Gaps = 11/116 (9%)
Query: 6 SLKQLKILNLGFNFFIDSILPYLNTLTSLTTLNLRYNKIEGSRTKQGICNLKNLLE---- 61
L++L++ N + LP SL L++ N +E + E
Sbjct: 158 LPTSLEVLSVRNNQL--TFLP--ELPESLEALDVSTNLLE--SLPAVPVRNHHSEETEIF 211
Query: 62 LDLSSNNFEGHLPQCLNNLTHLKVLDISYNQLSGNFPSVLTNLTSLEYLDLSFIDF 117
N H+P+ + +L + + N LS L+ T+ I F
Sbjct: 212 FRCRENRIT-HIPENILSLDPTCTIILEDNPLSSRIRESLSQQTAQPDYHGPRIYF 266
|
| >3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571 | Back alignment and structure |
|---|
Score = 50.4 bits (120), Expect = 8e-07
Identities = 33/226 (14%), Positives = 67/226 (29%), Gaps = 39/226 (17%)
Query: 6 SLKQLKILNLGFNFF--IDSILPYLNTL--------------TSLTTLNLRYNKIEGSRT 49
L+ L+ N + + L L L +N N++
Sbjct: 98 LPASLEYLDACDNRLSTLPELPASLKHLDVDNNQLTMLPELPALLEYINADNNQLTMLPE 157
Query: 50 KQGICNLKNLLELDLSSNNFEGHLPQCLNNLTHLKVLDISYNQLSGNFPSVLTNLTSLEY 109
+L L + +N LP+ +L LD+S N L + P+V E
Sbjct: 158 L-----PTSLEVLSVRNNQLT-FLPELPESLEA---LDVSTNLLE-SLPAVPVRNHHSEE 207
Query: 110 LD--LSFIDFQGTFLINSLANHSKLEVLVLSSGNDMLQVKTENWLPTYPLKVLQLSHCHL 167
+ + + T + ++ + ++L +N L + + L
Sbjct: 208 TEIFFRCRENRITHIPENILSLDPTCTIILE----------DNPLSSRIRESLSQQTAQP 257
Query: 168 NVNSSFLLHQHHLKFLDLSHNQLVGNFPTWLLQNNTGLEVLILWNN 213
+ + + + H L W N +V +W+
Sbjct: 258 DYHGPRIYFSMSDGQQNTLHRPLADAVTAWFP-ENKQSDVSQIWHA 302
|
| >1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285 | Back alignment and structure |
|---|
Score = 82.0 bits (203), Expect = 1e-17
Identities = 51/219 (23%), Positives = 83/219 (37%), Gaps = 11/219 (5%)
Query: 269 IPYSISEMKELITLDLSRNNFSGELPRSIFSSCLSLETLDLSNNNFYGQLFPN-FMNLTH 327
+P I + L N S +P + F +C +L L L +N ++ F L
Sbjct: 26 VPVGIPA--ASQRIFLHGNRIS-HVPAASFRACRNLTILWLHSNVL-ARIDAAAFTGLAL 81
Query: 328 LSSLRLNNNHFSGKMADGLLSS-TLLDVLDVSNNKLSGDIPHWIGNFSVLWLLLMSENYL 386
L L L++N + L L + L P + L L + +N L
Sbjct: 82 LEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNAL 141
Query: 387 QGSIPVQ-LGNLESLEFIDISENGL-SVSMVSLSNLSSVKHIYLHNNAINGLIPIALLRS 444
Q ++P +L +L + + N + SV + L S+ + LH N + + P A
Sbjct: 142 Q-ALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDL 200
Query: 445 STLLTLDLRDNKFFGRIPHQI-NELSNLHFLLLRGNSLQ 482
L+TL L N +P + L L +L L N
Sbjct: 201 GRLMTLYLFANN-LSALPTEALAPLRALQYLRLNDNPWV 238
|
| >1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285 | Back alignment and structure |
|---|
Score = 75.0 bits (185), Expect = 3e-15
Identities = 50/258 (19%), Positives = 78/258 (30%), Gaps = 54/258 (20%)
Query: 58 NLLELDLSSNNFEGHLPQCLNNLTHLKVLDISYNQLSGNFPSVLTNLTSLEYLDLSFIDF 117
+ L N +L +L + N L+ + T L LE LDLS
Sbjct: 33 ASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLS---- 88
Query: 118 QGTFLINSLANHSKLEVLVLSSGNDMLQVKTENWLPTYPLKVLQLSHCHL-NVNSSFLLH 176
+ S+ + + L L L C L +
Sbjct: 89 -DNAQLRSVDPAT--------------------FHGLGRLHTLHLDRCGLQELGPGLFRG 127
Query: 177 QHHLKFLDLSHNQLVGNFPTWLLQNNTGLEVLILWNNSFSGILPRLPNAKYDKLRHLDIS 236
L++L L N L P ++ L L L N S + R L L +
Sbjct: 128 LAALQYLYLQDNALQ-ALPDDTFRDLGNLTHLFLHGNRISSVPERAF-RGLHSLDRLLLH 185
Query: 237 TNNFSGKLPENLGIVFQKLIYLDVSKNSFEGNIPYSISEMKELITLDLSRNNFSGELPRS 296
N + V ++F + L+TL L NN S LP
Sbjct: 186 QNRVA-----------------HVHPHAFRD--------LGRLMTLYLFANNLS-ALPTE 219
Query: 297 IFSSCLSLETLDLSNNNF 314
+ +L+ L L++N +
Sbjct: 220 ALAPLRALQYLRLNDNPW 237
|
| >1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285 | Back alignment and structure |
|---|
Score = 71.6 bits (176), Expect = 5e-14
Identities = 49/210 (23%), Positives = 72/210 (34%), Gaps = 10/210 (4%)
Query: 10 LKILNLGFNFFIDSILPY-LNTLTSLTTLNLRYNKIEGSRTKQGICNLKNLLELDLSSNN 68
+ + L N I + +LT L L N + L L +LDLS N
Sbjct: 34 SQRIFLHGNR-ISHVPAASFRACRNLTILWLHSNVLA-RIDAAAFTGLALLEQLDLSDNA 91
Query: 69 FEGHLP-QCLNNLTHLKVLDISYNQLSGNFPSVLTNLTSLEYLDLSFIDFQGTFL-INSL 126
+ + L L L + L P + L +L+YL L D L ++
Sbjct: 92 QLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQ--DNALQALPDDTF 149
Query: 127 ANHSKLEVLVLSSGNDMLQVKTENWLPTYPLKVLQLSHCHLN-VNSSFLLHQHHLKFLDL 185
+ L L L GN + V + + L L L + V+ L L L
Sbjct: 150 RDLGNLTHLFL-HGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYL 208
Query: 186 SHNQLVGNFPTWLLQNNTGLEVLILWNNSF 215
N L PT L L+ L L +N +
Sbjct: 209 FANNLS-ALPTEALAPLRALQYLRLNDNPW 237
|
| >1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285 | Back alignment and structure |
|---|
Score = 63.9 bits (156), Expect = 2e-11
Identities = 38/164 (23%), Positives = 65/164 (39%), Gaps = 4/164 (2%)
Query: 2 DSFGSLKQLKILNLGFNFFIDSILPY-LNTLTSLTTLNLRYNKIEGSRTKQGICNLKNLL 60
+F L L+ L+L N + S+ P + L L TL+L ++ L L
Sbjct: 74 AAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQ-ELGPGLFRGLAALQ 132
Query: 61 ELDLSSNNFEGHLPQCLNNLTHLKVLDISYNQLSGNFPSVLTNLTSLEYLDLSFIDFQGT 120
L L N + +L +L L + N++S L SL+ L L
Sbjct: 133 YLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVA-H 191
Query: 121 FLINSLANHSKLEVLVLSSGNDMLQVKTENWLPTYPLKVLQLSH 164
++ + +L L L + N++ + TE P L+ L+L+
Sbjct: 192 VHPHAFRDLGRLMTLYLFA-NNLSALPTEALAPLRALQYLRLND 234
|
| >2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332 | Back alignment and structure |
|---|
Score = 81.2 bits (201), Expect = 5e-17
Identities = 64/306 (20%), Positives = 104/306 (33%), Gaps = 34/306 (11%)
Query: 10 LKILNLGFNFFIDSILPY-LNTLTSLTTLNLRYNKIEGSRTKQGICNLKNLLELDLSSNN 68
+L+L N I + L L L L NKI ++ L+ L +L +S N+
Sbjct: 56 TTLLDLQNND-ISELRKDDFKGLQHLYALVLVNNKIS-KIHEKAFSPLRKLQKLYISKNH 113
Query: 69 FEGHLPQCLNNLTHLKVLDISYNQLSGNFPSVLTNLTSLEYLDLSFIDFQGTFLINSLAN 128
+P L + L L I N++ V + L ++ +++ + + +
Sbjct: 114 LV-EIPPNL--PSSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFD 170
Query: 129 HSKLEVLVLSSGNDMLQVKTENWLPTYPLKVLQLSHCHL-NVNSSFLLHQHHLKFLDLSH 187
KL L +S + + + LP L L L H + + LL L L L H
Sbjct: 171 GLKLNYLRISE-AKLTGIPKD--LPET-LNELHLDHNKIQAIELEDLLRYSKLYRLGLGH 226
Query: 188 NQLVGNFPTWLLQNNTGLEVLILWNNSFSGILPRLPNAKYDKLRHLDISTNNFSGKLPEN 247
NQ+ L L L L NN S + LP+ K L+ + + TNN +
Sbjct: 227 NQI-RMIENGSLSFLPTLRELHLDNNKLSRVPAGLPDLKL--LQVVYLHTNNIT------ 277
Query: 248 LGIVFQKLIYLDVSKNSFEGNIPYSISEMKELITLDLSRNNFS-GELPRSIFSSCLSLET 306
V N F + + L N E+ + F
Sbjct: 278 -----------KVGVNDFCP--VGFGVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRLA 324
Query: 307 LDLSNN 312
+ N
Sbjct: 325 IQFGNY 330
|
| >2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332 | Back alignment and structure |
|---|
Score = 80.8 bits (200), Expect = 6e-17
Identities = 56/288 (19%), Positives = 103/288 (35%), Gaps = 21/288 (7%)
Query: 179 HLKFLDLSHNQLVGNFPTWLLQNNTGLEVLILWNNSFSGILPRLPNAKYDKLRHLDISTN 238
LDL +N + + L L+L NN S I + + KL+ L IS N
Sbjct: 55 DTTLLDLQNNDIS-ELRKDDFKGLQHLYALVLVNNKISKIHEKAF-SPLRKLQKLYISKN 112
Query: 239 NFSGKLPENLGIVFQKLIYLDVSKNSFEGNIPYSISEMKELITLDLSRNNF-SGELPRSI 297
+ ++P NL L+ L + N S ++ + +++ N +
Sbjct: 113 HLV-EIPPNL---PSSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGA 168
Query: 298 FSSCLSLETLDLSNNNFYGQLFPNFMNLTHLSSLRLNNNHFSGKMADGLLSSTLLDVLDV 357
F L L L +S P + L+ L L++N + LL + L L +
Sbjct: 169 FDG-LKLNYLRISEAKL--TGIPKDL-PETLNELHLDHNKIQAIELEDLLRYSKLYRLGL 224
Query: 358 SNNKLSGDIPHWIGNFSVLWLLLMSENYLQGSIPVQLGNLESLEFIDISENGLSV----- 412
+N++ + L L + N L +P L +L+ L+ + + N ++
Sbjct: 225 GHNQIRMIENGSLSFLPTLRELHLDNNKLS-RVPAGLPDLKLLQVVYLHTNNITKVGVND 283
Query: 413 --SMVSLSNLSSVKHIYLHNNAI--NGLIPIALLRSSTLLTLDLRDNK 456
+ + I L NN + + P + L + + K
Sbjct: 284 FCPVGFGVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQFGNYK 331
|
| >2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332 | Back alignment and structure |
|---|
Score = 75.1 bits (185), Expect = 5e-15
Identities = 57/256 (22%), Positives = 99/256 (38%), Gaps = 16/256 (6%)
Query: 230 LRHLDISTNNFSGKLPENLGIVFQKLIYLDVSKNSFEGNIPYSISEMKELITLDLSRNNF 289
LR + S +P+ + LD+ N ++ L L L N
Sbjct: 35 LRVVQCSDLGLK-AVPKEI---SPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKI 90
Query: 290 SGELPRSIFSSCLSLETLDLSNNNFYGQLFPNFMNLTHLSSLRLNNNHFSGKMADGLLSS 349
S ++ FS L+ L +S N+ P + + L LR+++N
Sbjct: 91 S-KIHEKAFSPLRKLQKLYISKNHL--VEIPPNL-PSSLVELRIHDNRIRKVPKGVFSGL 146
Query: 350 TLLDVLDVSNNKLSGDIPHWIGNFSVLWL--LLMSENYLQGSIPVQLGNLESLEFIDISE 407
++ +++ N L + G F L L L +SE L IP L E+L + +
Sbjct: 147 RNMNCIEMGGNPLE-NSGFEPGAFDGLKLNYLRISEAKLT-GIPKDL--PETLNELHLDH 202
Query: 408 NGLS-VSMVSLSNLSSVKHIYLHNNAINGLIPIALLRSSTLLTLDLRDNKFFGRIPHQIN 466
N + + + L S + + L +N I + +L TL L L +NK R+P +
Sbjct: 203 NKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNK-LSRVPAGLP 261
Query: 467 ELSNLHFLLLRGNSLQ 482
+L L + L N++
Sbjct: 262 DLKLLQVVYLHTNNIT 277
|
| >2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332 | Back alignment and structure |
|---|
Score = 60.4 bits (147), Expect = 4e-10
Identities = 38/224 (16%), Positives = 73/224 (32%), Gaps = 28/224 (12%)
Query: 5 GSLKQLKILNLGFNFFIDSILPY-LNTLTSLTTLNLRYNKIEGSRTKQGICNLKNLLELD 63
L L + N I + + L ++ + + N +E S + G + L L
Sbjct: 120 NLPSSLVELRIHDNR-IRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGLKLNYLR 178
Query: 64 LSSNNFEGHLPQCLNNLTHLKVLDISYNQLSGNFPSVLTNLTSLEYLDLSF-----IDFQ 118
+S +P+ + L L + +N++ L + L L L I+
Sbjct: 179 ISEAKLT-GIPK--DLPETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIEN- 234
Query: 119 GTFLINSLANHSKLEVLVLSSGNDMLQVKTENWLPTYP-LKVLQLSHCHLNV-------N 170
SL+ L L L N + +V LP L+V+ L ++
Sbjct: 235 -----GSLSFLPTLRELHL-DNNKLSRV--PAGLPDLKLLQVVYLHTNNITKVGVNDFCP 286
Query: 171 SSFLLHQHHLKFLDLSHNQL-VGNFPTWLLQNNTGLEVLILWNN 213
F + + + + L +N + + T + N
Sbjct: 287 VGFGVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQFGNY 330
|
| >1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605 | Back alignment and structure |
|---|
Score = 78.6 bits (193), Expect = 1e-15
Identities = 62/309 (20%), Positives = 120/309 (38%), Gaps = 32/309 (10%)
Query: 21 IDSILPYLNTLTSLTTLNLRYNKIEGSRTKQGICNLKNLLELDLSSNNFEGHLPQCLNNL 80
I I P + NL+ + + T L ++ ++ ++++ + + Q + L
Sbjct: 11 IKQIFP-DDAFAETIKDNLKKKSVTDAVT---QNELNSIDQIIANNSDIK-SV-QGIQYL 64
Query: 81 THLKVLDISYNQLSGNFPSVLTNLTSLEYLDLSFIDFQGTFLINSLANHSKLEVLVLSSG 140
++ L ++ N+L+ P LTNL +L +L L + ++SL + KL+ L L
Sbjct: 65 PNVTKLFLNGNKLTDIKP--LTNLKNLGWLFLDENKIKD---LSSLKDLKKLKSLSL-EH 118
Query: 141 NDMLQVKTENWLPTYP-LKVLQLSHCHLNVNSSFLLHQHHLKFLDLSHNQLVGNFPTWLL 199
N + N L P L+ L L + + + + L L L L NQ+ P L
Sbjct: 119 N---GISDINGLVHLPQLESLYLGNNKIT-DITVLSRLTKLDTLSLEDNQISDIVP---L 171
Query: 200 QNNTGLEVLILWNNSFSGILPRLPNAKYDKLRHLDISTNNFSGKLPENLGIVFQKLIYLD 259
T L+ L L N S + A L L++ + K + L+ +
Sbjct: 172 AGLTKLQNLYLSKNHISDL---RALAGLKNLDVLELFSQECLNKPINHQ----SNLVVPN 224
Query: 260 VSKNSFEGNI--PYSISEMKELITLDLSRNNFSGELPRSIFSSCLSLETLDLSNNNFYGQ 317
KN +G++ P IS+ + ++ + E + T+ + F+G+
Sbjct: 225 TVKN-TDGSLVTPEIISDDGDYEKPNVKWHLP--EFTNEVSFIFYQPVTIGKAKARFHGR 281
Query: 318 LFPNFMNLT 326
+ +
Sbjct: 282 VTQPLKEVY 290
|
| >1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605 | Back alignment and structure |
|---|
Score = 77.1 bits (189), Expect = 4e-15
Identities = 46/233 (19%), Positives = 93/233 (39%), Gaps = 20/233 (8%)
Query: 252 FQKLIYLDVSKNSFEGNIPYSISEMKELITLDLSRNNFSGELPRSI--FSSCLSLETLDL 309
F + I ++ K S + +E+ + + + ++ S+ ++ L L
Sbjct: 20 FAETIKDNLKKKSVTDAVT--QNELNSIDQIIANNSDIK-----SVQGIQYLPNVTKLFL 72
Query: 310 SNNNFYGQLFPNFMNLTHLSSLRLNNNHFSGKMADGLLSSTLLDVLDVSNNKLSGDIPHW 369
+ N NL +L L L+ N L L L + +N +S DI
Sbjct: 73 NGNKL--TDIKPLTNLKNLGWLFLDENKIK--DLSSLKDLKKLKSLSLEHNGIS-DING- 126
Query: 370 IGNFSVLWLLLMSENYLQGSIPVQLGNLESLEFIDISENGLSVSMVSLSNLSSVKHIYLH 429
+ + L L + N + L L L+ + + +N +S +V L+ L+ ++++YL
Sbjct: 127 LVHLPQLESLYLGNNKITDITV--LSRLTKLDTLSLEDNQIS-DIVPLAGLTKLQNLYLS 183
Query: 430 NNAINGLIPIALLRSSTLLTLDLRDNKFFGRIPHQINELSNLHFLLLRGNSLQ 482
N I+ L +A L++ L L+L + + + + L + + SL
Sbjct: 184 KNHISDLRALAGLKN--LDVLELFSQECLNKPINHQSNLVVPNTVKNTDGSLV 234
|
| >1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605 | Back alignment and structure |
|---|
Score = 68.6 bits (167), Expect = 1e-12
Identities = 48/229 (20%), Positives = 78/229 (34%), Gaps = 39/229 (17%)
Query: 2 DSFGSLKQLKILNLGFNFFIDSILPYLNTLTSLTTLNLRYNKIEGSRTKQGICNLKNLLE 61
L + L L N + I P L L +L L L NKI + + +LK L
Sbjct: 59 QGIQYLPNVTKLFLNGN-KLTDIKP-LTNLKNLGWLFLDENKI---KDLSSLKDLKKLKS 113
Query: 62 LDLSSNNFEGHLPQCLNNLTHLKVLDISYNQLSGNFPSVLTNLTSLEYLDLSFIDFQGTF 121
L L N L +L L+ L + N+++ +VL+ LT L+ L L
Sbjct: 114 LSLEHNGIS--DINGLVHLPQLESLYLGNNKITD--ITVLSRLTKLDTLSLED------- 162
Query: 122 LINSLANHSKLEVLVLSSGNDMLQVKTENWLPTYPLKVLQLSHCHLNVNSSFLLHQHHLK 181
N +++ L L L+ L LS H++ + L +L
Sbjct: 163 --NQISDIVPLAGLTK-------------------LQNLYLSKNHIS-DLRALAGLKNLD 200
Query: 182 FLDLSHNQLVGNFPTWLLQNNTGLEVLILWNNSFSGILPRLPNAKYDKL 230
L+L + + N + + S + Y+K
Sbjct: 201 VLELFSQECLNKPINH-QSNLVVPNTVKNTDGSLVTPEIISDDGDYEKP 248
|
| >1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605 | Back alignment and structure |
|---|
Score = 67.1 bits (163), Expect = 5e-12
Identities = 48/305 (15%), Positives = 91/305 (29%), Gaps = 76/305 (24%)
Query: 34 LTTLNLRYNKIEGSRTKQGICNLKNLLELDLSSNNFEGHLPQCLNNLTHLKVLDISYNQL 93
+ I+ ++ +L + N L + + + + +
Sbjct: 1 MGETITVSTPIK---QIFPDDAFAETIKDNLKKKSVTD--AVTQNELNSIDQIIANNSDI 55
Query: 94 SGNFPSVLTNLTSLEYLDLSFIDFQGTFLINSLANHSKLEVLVLSSGNDMLQVKTENWLP 153
+ L ++ L L+ + +L N
Sbjct: 56 KSVQG--IQYLPNVTKLFLNGNKLTDIKPLTNLKN------------------------- 88
Query: 154 TYPLKVLQLSHCHLNVNSSFLLHQHHLKFLDLSHNQLVGNFPTWLLQNNTGLEVLILWNN 213
L L L + + S L LK L L HN + L + LE L L NN
Sbjct: 89 ---LGWLFLDENKIK-DLSSLKDLKKLKSLSLEHNGISDING---LVHLPQLESLYLGNN 141
Query: 214 SFSGI--LPRLPNAKYDKLRHLDISTNNFSGKLPENLGIVFQKLIYLDVSKNSFEGNIPY 271
+ I L RL L L + N S +I
Sbjct: 142 KITDITVLSRLTK-----LDTLSLEDNQIS--------------------------DIV- 169
Query: 272 SISEMKELITLDLSRNNFSGELPRSIFSSCLSLETLDLSNNNFYGQLFPNFMNLTHLSSL 331
++ + +L L LS+N+ S +L + +L+ L+L + + + NL +++
Sbjct: 170 PLAGLTKLQNLYLSKNHIS-DL--RALAGLKNLDVLELFSQECLNKPINHQSNLVVPNTV 226
Query: 332 RLNNN 336
+ +
Sbjct: 227 KNTDG 231
|
| >1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605 | Back alignment and structure |
|---|
Score = 61.7 bits (149), Expect = 3e-10
Identities = 34/134 (25%), Positives = 54/134 (40%), Gaps = 7/134 (5%)
Query: 2 DSFGSLKQLKILNLGFNFFIDSILPYLNTLTSLTTLNLRYNKIEGSRTKQGICNLKNLLE 61
+ L QL+ L LG N I I L+ LT L TL+L N+I + L L
Sbjct: 125 NGLVHLPQLESLYLGNNK-ITDITV-LSRLTKLDTLSLEDNQIS---DIVPLAGLTKLQN 179
Query: 62 LDLSSNNFEGHLPQCLNNLTHLKVLDISYNQLSGNFPSVLTNLTSLEYLDLSFIDFQGTF 121
L LS N+ + L L +L VL++ + + +NL + +
Sbjct: 180 LYLSKNHISD--LRALAGLKNLDVLELFSQECLNKPINHQSNLVVPNTVKNTDGSLVTPE 237
Query: 122 LINSLANHSKLEVL 135
+I+ ++ K V
Sbjct: 238 IISDDGDYEKPNVK 251
|
| >1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605 | Back alignment and structure |
|---|
Score = 57.8 bits (139), Expect = 4e-09
Identities = 42/209 (20%), Positives = 82/209 (39%), Gaps = 38/209 (18%)
Query: 273 ISEMKELITLDLSRNNFSGELPRSIFSSCLSLETLDLSNNNFYGQLFPNFMNLTHLSSLR 332
E I +L + + + + + S++ + +N++ + L +++ L
Sbjct: 17 DDAFAETIKDNLKKKSVTDAVT---QNELNSIDQIIANNSDI--KSVQGIQYLPNVTKLF 71
Query: 333 LNNNHFSGKMADGLLSSTLLDVLDVSNNKLSGDIPHWIGNFSVLWLLLMSENYLQGSIPV 392
LN N + L + L L + NK+ D+
Sbjct: 72 LNGNKLTD--IKPLTNLKNLGWLFLDENKIK-DLSS------------------------ 104
Query: 393 QLGNLESLEFIDISENGLSVSMVSLSNLSSVKHIYLHNNAINGLIPIALLRSSTLLTLDL 452
L +L+ L+ + + NG+S + L +L ++ +YL NN I + ++ L L TL L
Sbjct: 105 -LKDLKKLKSLSLEHNGIS-DINGLVHLPQLESLYLGNNKITDITVLSRLTK--LDTLSL 160
Query: 453 RDNKFFGRIPHQINELSNLHFLLLRGNSL 481
DN+ +P + L+ L L L N +
Sbjct: 161 EDNQISDIVP--LAGLTKLQNLYLSKNHI 187
|
| >3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457 | Back alignment and structure |
|---|
Score = 77.8 bits (192), Expect = 1e-15
Identities = 74/425 (17%), Positives = 122/425 (28%), Gaps = 52/425 (12%)
Query: 3 SFGSLKQLKILNLGFNFFIDSILPYLNTLTSLTTLNLRYNKIEGSRTKQGICNLKNLLEL 62
S L L L+ + D + + LT LT L N I T + NL L
Sbjct: 37 SEEQLATLTSLDCHNSSITD--MTGIEKLTGLTKLICTSNNI----TTLDLSQNTNLTYL 90
Query: 63 DLSSNNFEGHLPQCLNNLTHLKVLDISYNQLSGNFPSVLTNLTSLEYLDLSFIDFQGTFL 122
SN +L + LT L L+ N+L+ S LT L + +
Sbjct: 91 ACDSNKLT-NLD--VTPLTKLTYLNCDTNKLTKLDVSQNPLLTYLNCARNTLTEI----- 142
Query: 123 INSLANHSKLEVLVLSSGNDMLQVKTENWLPTYPLKVLQLSHCHLNVNSSFLLHQHHLKF 182
++++++L L N + L L S + + L
Sbjct: 143 --DVSHNTQLTELDC-HLNKKITKLDVTPQTQ--LTTLDCSFNKI--TELDVSQNKLLNR 195
Query: 183 LDLSHNQLVGNFPTWLLQNNTGLEVLILWNNSFSGILPRLPNAKYDKLRHLDISTNNFSG 242
L+ N + L N L L +N + + +L + D S N +
Sbjct: 196 LNCDTNNIT----KLDLNQNIQLTFLDCSSNKLT----EIDVTPLTQLTYFDCSVNPLT- 246
Query: 243 KLPENLGIVFQKLIYLDVSKNSFEGNIPYSISEMKELITLDLSRNNFSGELPRSIFSSCL 302
+L + KL L + ++ +LI ++ +
Sbjct: 247 ELDVST---LSKLTTLHCIQTDLLEI---DLTHNTQLIYFQAEGCR---KIKELDVTHNT 297
Query: 303 SLETLDLSNNNFYGQLFPNFMNLTHLSSLRLNNNHFSGKMADGLLSSTLLDVLDVSNNKL 362
L LD + L L LNN + T L L N +
Sbjct: 298 QLYLLDCQAAGI---TELDLSQNPKLVYLYLNNTELTELDVSHN---TKLKSLSCVNAHI 351
Query: 363 SGDIPHWIGNFSVLWLLLMSENYLQGSIPVQLGNLE-----SLEFIDISENGLSVSMVSL 417
D +G L +E L N S + +D N +++
Sbjct: 352 Q-DFS-SVGKIPALNNNFEAEGQTITMPKETLTNNSLTIAVSPDLLDQFGNPMNIEPGDG 409
Query: 418 SNLSS 422
Sbjct: 410 GVYDQ 414
|
| >3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457 | Back alignment and structure |
|---|
Score = 72.0 bits (177), Expect = 1e-13
Identities = 64/419 (15%), Positives = 135/419 (32%), Gaps = 46/419 (10%)
Query: 57 KNLLELDLSSNNFEGHLPQCLNNLTHLKVLDISYNQLSGNFPSVLTNLTSLEYLDLSFID 116
N ++ + L L LD + ++ + + LT L L + +
Sbjct: 18 DNFASEVAAAFEMQATDTISEEQLATLTSLDCHNSSITD--MTGIEKLTGLTKLICTSNN 75
Query: 117 FQGTFLINSLANHSKLEVLVLSSGNDMLQVKTENWLPTYPLKVLQLSHCHLNVNSSFLLH 176
L+ ++ L L S ++ + P L L L
Sbjct: 76 ITTL----DLSQNTNLTYLACDSN----KLTNLDVTPLTKLTYLNCDTNKLTKLDVSQNP 127
Query: 177 QHHLKFLDLSHNQLVGNFPTWLLQNNTGLEVLILWNNSFSGILPRLPNAKYDKLRHLDIS 236
L +L+ + N L + +NT L L N + +L +L LD S
Sbjct: 128 L--LTYLNCARNTLT----EIDVSHNTQLTELDCHLNK---KITKLDVTPQTQLTTLDCS 178
Query: 237 TNNFSGKLPENLGIVFQKLIYLDVSKNSFEGNIPYSISEMKELITLDLSRNNFSGELPRS 296
N + + L L+ N+ + +++ +L LD S N + E+
Sbjct: 179 FNKITELDVSQN----KLLNRLNCDTNNIT-KLD--LNQNIQLTFLDCSSNKLT-EID-- 228
Query: 297 IFSSCLSLETLDLSNNNFYGQLFPNFMNLTHLSSLRLNNNHFSGKMADGLLSSTLLDVLD 356
+ L D S N + L+ L++L L +T L
Sbjct: 229 -VTPLTQLTYFDCSVNPLTEL---DVSTLSKLTTLHCIQTDLL---EIDLTHNTQLIYFQ 281
Query: 357 VSNNKLSGDIPHWIGNFSVLWLLLMSENYLQGSIPVQLGNLESLEFIDISENGLSVSMVS 416
+ ++ + + + L+LL + + L L ++ ++ L + +
Sbjct: 282 AEGCRKIKELD--VTHNTQLYLLDCQAAGIT---ELDLSQNPKLVYLYLNNTEL--TELD 334
Query: 417 LSNLSSVKHIYLHNNAINGLIPIALLRSSTLLTLDLRDNKFFGRIPHQINELSNLHFLL 475
+S+ + +K + N I + + + L + + +P + ++L +
Sbjct: 335 VSHNTKLKSLSCVNAHIQDFSSVGKIPA--LNNNFEAEGQTI-TMPKETLTNNSLTIAV 390
|
| >3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457 | Back alignment and structure |
|---|
Score = 60.5 bits (147), Expect = 6e-10
Identities = 69/405 (17%), Positives = 125/405 (30%), Gaps = 48/405 (11%)
Query: 78 NNLTHLKVLDISYNQLSGNFPSVLTNLTSLEYLDLSFIDFQGTFLINSLANHSKLEVLVL 137
+N L LTSL+ + S D + + + L L+
Sbjct: 18 DNFASEVAAAFEMQATDTISEEQLATLTSLDCHNSSITD------MTGIEKLTGLTKLIC 71
Query: 138 SSGNDMLQVKTENWLPTYPLKVLQLSHCHLNVNSSFLLHQHHLKFLDLSHNQLVGNFPTW 197
+S + T + L L L + + L +L+ N+L +
Sbjct: 72 TSN----NITTLDLSQNTNLTYLACDSNKL--TNLDVTPLTKLTYLNCDTNKLTKLDVS- 124
Query: 198 LLQNNTGLEVLILWNNSFSGILPRLPNAKYDKLRHLDISTNNFSGKLPENLGIVFQKLIY 257
N L L N+ L + + +L LD N KL +L
Sbjct: 125 ---QNPLLTYLNCARNT----LTEIDVSHNTQLTELDCHLNKKITKLDVTP---QTQLTT 174
Query: 258 LDVSKNSFEGNIPYSISEMKELITLDLSRNNFSGELPRSIFSSCLSLETLDLSNNNFYGQ 317
LD S N +S+ K L L+ NN + +L + + L LD S+N
Sbjct: 175 LDCSFNKITE---LDVSQNKLLNRLNCDTNNIT-KLD---LNQNIQLTFLDCSSNKLTE- 226
Query: 318 LFPNFMNLTHLSSLRLNNNHFSGKMADGLLSSTLLDVLDVSNNKLSGDIPHWIGNFSVLW 377
+ LT L+ + N + L + L L L I
Sbjct: 227 --IDVTPLTQLTYFDCSVNPLTELDVSTL---SKLTTLHCIQTDLLE-----IDLTHNTQ 276
Query: 378 LLLMSENYLQGSIPVQLGNLESLEFIDISENGLSVSMVSLSNLSSVKHIYLHNNAINGLI 437
L+ + + + + L +D G+ + + LS + ++YL+N + L
Sbjct: 277 LIYFQAEGCRKIKELDVTHNTQLYLLDCQAAGI--TELDLSQNPKLVYLYLNNTELTEL- 333
Query: 438 PIALLRSSTLLTLDLRDNKFFGRIPHQINELSNLHFLLLRGNSLQ 482
++ L +L + + ++ L+
Sbjct: 334 DVSHNTK--LKSLSCVNAH-IQDFS-SVGKIPALNNNFEAEGQTI 374
|
| >4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197 | Back alignment and structure |
|---|
Score = 72.7 bits (179), Expect = 5e-15
Identities = 26/137 (18%), Positives = 47/137 (34%), Gaps = 7/137 (5%)
Query: 3 SFGSLKQLKILNLGFNFFIDSILPYLNTLTSLTTLNLRYNKIEGSRTKQGICNLKNLLEL 62
+ + L + L D L + ++ L + I L NL L
Sbjct: 39 TEAQMNSLTYITLANINVTD--LTGIEYAHNIKDLTINNIHATNY---NPISGLSNLERL 93
Query: 63 DLSSNNFEGHLPQCLNNLTHLKVLDISYNQLSGNFPSVLTNLTSLEYLDLSFIDFQGTFL 122
+ + L+ LT L +LDIS++ + + + L + +DLS
Sbjct: 94 RIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLS--YNGAITD 151
Query: 123 INSLANHSKLEVLVLSS 139
I L +L+ L +
Sbjct: 152 IMPLKTLPELKSLNIQF 168
|
| >4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197 | Back alignment and structure |
|---|
Score = 70.0 bits (172), Expect = 4e-14
Identities = 27/113 (23%), Positives = 46/113 (40%), Gaps = 4/113 (3%)
Query: 1 YDSFGSLKQLKILNLGFNFFIDSILPYLNTLTSLTTLNLRYNKIEGSRTKQGICNLKNLL 60
Y+ L L+ L + +P L+ LTSLT L++ ++ + S I L +
Sbjct: 81 YNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILT-KINTLPKVN 139
Query: 61 ELDLSSNNFEGHLPQCLNNLTHLKVLDISYNQLSGNFPSVLTNLTSLEYLDLS 113
+DLS N + L L LK L+I ++ + + + L L
Sbjct: 140 SIDLSYNGAITDI-MPLKTLPELKSLNIQFDGVHD--YRGIEDFPKLNQLYAF 189
|
| >4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197 | Back alignment and structure |
|---|
Score = 66.9 bits (164), Expect = 5e-13
Identities = 37/213 (17%), Positives = 79/213 (37%), Gaps = 37/213 (17%)
Query: 6 SLKQLKILNLGFNFFIDSILPYLNTLTSLTTLNLRYNKIEGSRTKQGICNLKNLLELDLS 65
+ K LG + + + SLT + L + GI N+ +L ++
Sbjct: 21 TFKAYLNGLLGQSSTAN---ITEAQMNSLTYITLANINVTDL---TGIEYAHNIKDLTIN 74
Query: 66 SNNFEGHLPQCLNNLTHLKVLDISYNQLSGNFPSVLTNLTSLEYLDLSFIDFQGTFLINS 125
+ + + P ++ L++L+ L I ++ + L+ LTSL LD+S
Sbjct: 75 NIHATNYNP--ISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDIS------------ 120
Query: 126 LANHSKLEVLVLSSGNDMLQVKTENWLPTYPLKVLQLSHCHLNVNSSFLLHQHHLKFLDL 185
HS + +L+ N + + + + LS+ + L LK L++
Sbjct: 121 ---HSAHDDSILTKINTLPK-----------VNSIDLSYNGAITDIMPLKTLPELKSLNI 166
Query: 186 SHNQLVGNFPTWLLQNNTGLEVLILWNNSFSGI 218
+ + +++ L L ++ + G
Sbjct: 167 QFDGVHDYRG---IEDFPKLNQLYAFSQTIGGK 196
|
| >4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197 | Back alignment and structure |
|---|
Score = 62.7 bits (153), Expect = 1e-11
Identities = 31/185 (16%), Positives = 71/185 (38%), Gaps = 10/185 (5%)
Query: 252 FQKLIYLDVSKNSFEGNIPYSISEMKELITLDLSRNNFSGELPRSIFSSCLSLETLDLSN 311
F+ + + ++S + ++M L + L+ N + + +++ L ++N
Sbjct: 22 FKAYLNGLLGQSS---TANITEAQMNSLTYITLANINVTDL---TGIEYAHNIKDLTINN 75
Query: 312 NNFYGQLFPNFMNLTHLSSLRLNNNHFSGKMADGLLSSTLLDVLDVSNNKLSGDIPHWIG 371
+ + L++L LR+ + L T L +LD+S++ I I
Sbjct: 76 IHATN--YNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKIN 133
Query: 372 NFSVLWLLLMSENYLQGSIPVQLGNLESLEFIDISENGLSVSMVSLSNLSSVKHIYLHNN 431
+ + +S N I L L L+ ++I +G+ + + + +Y +
Sbjct: 134 TLPKVNSIDLSYNGAITDIMP-LKTLPELKSLNIQFDGVH-DYRGIEDFPKLNQLYAFSQ 191
Query: 432 AINGL 436
I G
Sbjct: 192 TIGGK 196
|
| >4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197 | Back alignment and structure |
|---|
Score = 62.3 bits (152), Expect = 2e-11
Identities = 30/154 (19%), Positives = 59/154 (38%), Gaps = 6/154 (3%)
Query: 303 SLETLDLSNNNFYGQLFPNFMNLTHLSSLRLNNNHFSGKMADGLLSSTLLDVLDVSNNKL 362
SL + L+N N ++ L +NN H + + + + L+ L + +
Sbjct: 45 SLTYITLANINVTD--LTGIEYAHNIKDLTINNIHATN--YNPISGLSNLERLRIMGKDV 100
Query: 363 SGDIPHWIGNFSVLWLLLMSENYLQGSIPVQLGNLESLEFIDISENGLSVSMVSLSNLSS 422
+ D + + L LL +S + SI ++ L + ID+S NG ++ L L
Sbjct: 101 TSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIMPLKTLPE 160
Query: 423 VKHIYLHNNAINGLIPIALLRSSTLLTLDLRDNK 456
+K + + + ++ I L L
Sbjct: 161 LKSLNIQFDGVHDYRGIEDF--PKLNQLYAFSQT 192
|
| >4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197 | Back alignment and structure |
|---|
Score = 56.9 bits (138), Expect = 1e-09
Identities = 25/162 (15%), Positives = 63/162 (38%), Gaps = 11/162 (6%)
Query: 179 HLKFLDLSHNQLVGNFPTWLLQNNTGLEVLILWNNSFSGILPRLPNAKYDKLRHLDISTN 238
L ++ L++ + ++ ++ L + N + P + L L I
Sbjct: 45 SLTYITLANINVTDLTG---IEYAHNIKDLTINNIHATNYNP---ISGLSNLERLRIMGK 98
Query: 239 NFSGKLPENLGIVFQKLIYLDVSKNSFEGNIPYSISEMKELITLDLSRNNFSGELPRSIF 298
+ + NL L LD+S ++ + +I I+ + ++ ++DLS N ++
Sbjct: 99 DVTSDKIPNLS-GLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDI--MPL 155
Query: 299 SSCLSLETLDLSNNNFYGQLFPNFMNLTHLSSLRLNNNHFSG 340
+ L++L++ + + + + L+ L + G
Sbjct: 156 KTLPELKSLNIQFDGVHD--YRGIEDFPKLNQLYAFSQTIGG 195
|
| >4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197 | Back alignment and structure |
|---|
Score = 42.3 bits (100), Expect = 1e-04
Identities = 14/97 (14%), Positives = 38/97 (39%), Gaps = 3/97 (3%)
Query: 391 PVQLGNLESLEFIDISENGLSVSMVSLSNLSSVKHIYLHNNAINGLIPIALLRSSTLLTL 450
+ + SL +I ++ ++ + + ++K + ++N PI+ L + L L
Sbjct: 37 NITEAQMNSLTYITLANINVT-DLTGIEYAHNIKDLTINNIHATNYNPISGLSN--LERL 93
Query: 451 DLRDNKFFGRIPHQINELSNLHFLLLRGNSLQGRIPN 487
+ ++ L++L L + ++ I
Sbjct: 94 RIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILT 130
|
| >4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197 | Back alignment and structure |
|---|
Score = 40.7 bits (96), Expect = 4e-04
Identities = 14/88 (15%), Positives = 37/88 (42%), Gaps = 1/88 (1%)
Query: 394 LGNLESLEFIDISENGLSVSMVSLSNLSSVKHIYLHNNAINGLIPIALLRSSTLLTLDLR 453
+ +++ + I+ + + +S LS+++ + + + L ++L LD+
Sbjct: 62 IEYAHNIKDLTINNIHAT-NYNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDIS 120
Query: 454 DNKFFGRIPHQINELSNLHFLLLRGNSL 481
+ I +IN L ++ + L N
Sbjct: 121 HSAHDDSILTKINTLPKVNSIDLSYNGA 148
|
| >1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312 | Back alignment and structure |
|---|
Score = 70.3 bits (172), Expect = 2e-13
Identities = 57/319 (17%), Positives = 98/319 (30%), Gaps = 63/319 (19%)
Query: 33 SLTTLNLRYNKIEGSRTKQGICNLKNLLELDLSSNNFEGHLPQC---LNNLTHLKVLDIS 89
SL L R + I +L L + + + + ++ L+ L +
Sbjct: 44 SLEYLLKRVDTEADLGQFTDIIKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLE 103
Query: 90 YNQLSGNFPSVLTNLT--SLEYLDLSFIDFQGTFLINSLANHSKLEVLVLSSGNDMLQVK 147
+++G P L T L L+L + + + +
Sbjct: 104 NLEVTGTAPPPLLEATGPDLNILNLRNVSWATRDAWLA---------------------E 142
Query: 148 TENWLPTYPLKVLQLSHCHLN-VNSSFLLHQHHLKFLDLSHNQLVGNFP---TWLLQNNT 203
+ WL LKVL ++ H + + L LDLS N +G
Sbjct: 143 LQQWLKPG-LKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFP 201
Query: 204 GLEVLILWNNSFSGILPRLPN--AKYDKLRHLDISTNNFSGKLPENLGIVFQKLIYLDVS 261
L+VL L N A +L+ LD+S N+ +L L++S
Sbjct: 202 TLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLS 261
Query: 262 KNSFEGNIPYSISEMKELITLDLSRNNFSGELPRSIFSSCLSLETLDLSNNNFYGQLFPN 321
+ ++P+ + + L LDLS N P+
Sbjct: 262 FTGLK-------------------------QVPKGLPA---KLSVLDLSYNRL--DRNPS 291
Query: 322 FMNLTHLSSLRLNNNHFSG 340
L + +L L N F
Sbjct: 292 PDELPQVGNLSLKGNPFLD 310
|
| >1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312 | Back alignment and structure |
|---|
Score = 69.9 bits (171), Expect = 2e-13
Identities = 49/279 (17%), Positives = 78/279 (27%), Gaps = 20/279 (7%)
Query: 100 VLTNLTSLEYLDLSFIDFQGTFLINSLANHSKLEVLVLS--SGNDMLQVKTENWLPTYPL 157
+ SLEYL + L+ L + + L L
Sbjct: 38 LYGGGRSLEYLLKRVDTEADLGQFTDIIKSLSLKRLTVRAARIPSRILFGALRVLGISGL 97
Query: 158 KVLQLSHCHLNVNSSFLLHQHH---LKFLDLSHNQLVGNF---PTWLLQNNTGLEVLILW 211
+ L L + + + L + L L+L + GL+VL +
Sbjct: 98 QELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIA 157
Query: 212 NNSFSGILPRLPNAKYDKLRHLDISTNNFSGKLPENLGIV---FQKLIYLDVSKNSFE-- 266
+ L LD+S N G+ + F L L + E
Sbjct: 158 QAHSLNFSCEQVR-VFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETP 216
Query: 267 -GNIPYSISEMKELITLDLSRNNFSGELPRSIFSSCLSLETLDLSNNNFYGQLFPNFMNL 325
G + +L LDLS N+ L +L+LS Q+
Sbjct: 217 SGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLK-QVPKGL--P 273
Query: 326 THLSSLRLNNNHFSGKMADGLLSSTLLDVLDVSNNKLSG 364
LS L L+ N + L + L + N
Sbjct: 274 AKLSVLDLSYNRLDRNPSPDELPQ--VGNLSLKGNPFLD 310
|
| >1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312 | Back alignment and structure |
|---|
Score = 65.7 bits (160), Expect = 6e-12
Identities = 50/271 (18%), Positives = 84/271 (30%), Gaps = 22/271 (8%)
Query: 230 LRHLDISTNNFSGKLPENLGIVFQKLIYLDVSKNSFEGNIPYSISE---MKELITLDLSR 286
L +L + + I L L V I + + L L L
Sbjct: 45 LEYLLKRVDTEADLGQFTDIIKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLEN 104
Query: 287 NNFSGELPRSIFS-SCLSLETLDLSNNNFYGQLFP----NFMNLTHLSSLRLNNNHFSGK 341
+G P + + L L+L N ++ + L L + H
Sbjct: 105 LEVTGTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAHSLNF 164
Query: 342 MADGLLSSTLLDVLDVSNNKLSGDIPHWI----GNFSVLWLLLMSENYLQ---GSIPVQL 394
+ + L LD+S+N G+ F L +L + ++ G
Sbjct: 165 SCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALA 224
Query: 395 GNLESLEFIDISENGLS--VSMVSLSNLSSVKHIYLHNNAINGLIPIALLRSSTLLTLDL 452
L+ +D+S N L S S + + L + + + L LDL
Sbjct: 225 AARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLKQVPKGL---PAKLSVLDL 281
Query: 453 RDNKFFGRIPHQINELSNLHFLLLRGNSLQG 483
N+ R P +EL + L L+GN
Sbjct: 282 SYNR-LDRNP-SPDELPQVGNLSLKGNPFLD 310
|
| >1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312 | Back alignment and structure |
|---|
Score = 64.1 bits (156), Expect = 2e-11
Identities = 53/284 (18%), Positives = 90/284 (31%), Gaps = 20/284 (7%)
Query: 165 CHLNVNSSFLLHQHHLKFLDLSHNQLVGNFPTWLLQNNTGLEVLILWNNSFSGILPR--L 222
C + L++L + + + L+ L + + L
Sbjct: 30 CLGAADVELYGGGRSLEYLLKRVDTEADLGQFTDIIKSLSLKRLTVRAARIPSRILFGAL 89
Query: 223 PNAKYDKLRHLDISTNNFSGKLPENLG-IVFQKLIYLDVSKNSFEGNIPYSISEMKELIT 281
L+ L + +G P L L L++ S+ ++E+++ +
Sbjct: 90 RVLGISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATR-DAWLAELQQWLK 148
Query: 282 LDLSR----NNFSGELPRSIFSSCLSLETLDLSNNNFYGQLFPNFM----NLTHLSSLRL 333
L S +L TLDLS+N G+ L L L
Sbjct: 149 PGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLAL 208
Query: 334 NNNHF---SGKMADGLLSSTLLDVLDVSNNKLSGDIPHWIGNFSV-LWLLLMSENYLQGS 389
N SG + + L LD+S+N L ++ L L +S L+
Sbjct: 209 RNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLK-Q 267
Query: 390 IPVQLGNLESLEFIDISENGLSVSMVSLSNLSSVKHIYLHNNAI 433
+P L L +D+S N L S L V ++ L N
Sbjct: 268 VPKGL--PAKLSVLDLSYNRLD-RNPSPDELPQVGNLSLKGNPF 308
|
| >1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312 | Back alignment and structure |
|---|
Score = 63.0 bits (153), Expect = 4e-11
Identities = 42/223 (18%), Positives = 68/223 (30%), Gaps = 13/223 (5%)
Query: 3 SFGSLKQLKILNLGF--NFFIDSILPYLNTLTSLTTLNLRYNKIEGSRTKQGICNLKNLL 60
L++L + NL + L L N+ + + + L
Sbjct: 93 GISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLK 152
Query: 61 ELDLSSNNFEGHLPQCLNNLTHLKVLDISYNQLSGNFP----SVLTNLTSLEYLDLSFID 116
L ++ + + + L LD+S N G +L+ L L
Sbjct: 153 VLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAG 212
Query: 117 FQGTFLI--NSLANHSKLEVLVLSSGNDMLQVKTENWLPTYPLKVLQLSHCHLNVNSSFL 174
+ + A +L+ L LS + + L L LS L L
Sbjct: 213 METPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLKQVPKGL 272
Query: 175 LHQHHLKFLDLSHNQLVGNFPTWLLQNNTGLEVLILWNNSFSG 217
+ L LDLS+N+L N L + L L N F
Sbjct: 273 PAK--LSVLDLSYNRLDRNPSPDELPQ---VGNLSLKGNPFLD 310
|
| >1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312 | Back alignment and structure |
|---|
Score = 54.5 bits (131), Expect = 3e-08
Identities = 35/219 (15%), Positives = 66/219 (30%), Gaps = 25/219 (11%)
Query: 277 KELITLDLSRNNFSGELPRSIFSSCLSLETLDLSNNNFYGQLFPN---FMNLTHLSSLRL 333
+ L L + + + LSL+ L + ++ + ++ L L L
Sbjct: 43 RSLEYLLKRVDTEADLGQFTDIIKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTL 102
Query: 334 NNNHFSGKMADGLLSSTL--LDVLDVSNNKLSGDIPHWIGNFSVLWLLL----MSENYLQ 387
N +G LL +T L++L++ N + L L +++ +
Sbjct: 103 ENLEVTGTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAHSL 162
Query: 388 GSIPVQLGNLESLEFIDISENGLSVSMVSLSNLSSVKHIYLHNNAINGLIPIALLRSSTL 447
Q+ +L +D+S+N I+ L P+ L
Sbjct: 163 NFSCEQVRVFPALSTLDLSDNPELGE----------------RGLISALCPLKFPTLQVL 206
Query: 448 LTLDLRDNKFFGRIPHQINELSNLHFLLLRGNSLQGRIP 486
+ G L L L NSL+
Sbjct: 207 ALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAG 245
|
| >1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312 | Back alignment and structure |
|---|
Score = 53.4 bits (128), Expect = 6e-08
Identities = 27/112 (24%), Positives = 41/112 (36%), Gaps = 5/112 (4%)
Query: 2 DSFGSLKQLKILNLGFNFFIDSILPYLNTLTSLTTLNLRYNKIEGSRTKQGICNLKNLLE 61
F +L+ L + N G L L+L +N + + L
Sbjct: 198 LKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNS 257
Query: 62 LDLSSNNFEGHLPQCLNNLTHLKVLDISYNQLSGNFPSVLTNLTSLEYLDLS 113
L+LS + +P+ L L VLD+SYN+L N L + L L
Sbjct: 258 LNLSFTGLK-QVPKGL--PAKLSVLDLSYNRLDRN--PSPDELPQVGNLSLK 304
|
| >1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312 | Back alignment and structure |
|---|
Score = 48.7 bits (116), Expect = 2e-06
Identities = 24/119 (20%), Positives = 36/119 (30%), Gaps = 10/119 (8%)
Query: 2 DSFGSLKQLKILNLGFNFFIDSI----LPYLNTLTSLTTLNLRYNKIE--GSRTKQGICN 55
+ L L+L N + +L L LR +E
Sbjct: 167 EQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAA 226
Query: 56 LKNLLELDLSSNNFEGHLP-QCLNNLTHLKVLDISYNQLSGNFPSVLTNLTSLEYLDLS 113
L LDLS N+ + + L L++S+ L + L LDLS
Sbjct: 227 RVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLKQVPKGLPAK---LSVLDLS 282
|
| >1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308 | Back alignment and structure |
|---|
Score = 70.1 bits (172), Expect = 2e-13
Identities = 55/294 (18%), Positives = 109/294 (37%), Gaps = 29/294 (9%)
Query: 21 IDSILPYLNTLTSLTTLNLRYNKIEGSRTKQGICNLKNLLELDLSSNNFEGHLPQCLNNL 80
I+ I P L + + + + + T +L + L + + L
Sbjct: 9 INVIFP-DPALANAIKIAAGKSNVTDTVT---QADLDGITTLSAFGTGVTT--IEGVQYL 62
Query: 81 THLKVLDISYNQLSGNFPSVLTNLTSLEYLDLSFIDFQGTFLINSLANHSKLEVLVLSSG 140
+L L++ NQ++ + L NLT + L+LS + ++++A ++ L L+S
Sbjct: 63 NNLIGLELKDNQITD--LAPLKNLTKITELELSGNPLKN---VSAIAGLQSIKTLDLTS- 116
Query: 141 NDMLQVKTENWLPTYPLKVLQLSHCHLNVNSSFLLHQHHLKFLDLSHNQLVGNFPTWLLQ 200
+ V L L+VL L + N S L +L++L + + Q+ P L
Sbjct: 117 TQITDVTPLAGLSN--LQVLYLDLNQIT-NISPLAGLTNLQYLSIGNAQVSDLTP---LA 170
Query: 201 NNTGLEVLILWNNSFSGILPRLPNAKYDKLRHLDISTNNFSGKLP-ENLGIVFQKLIYLD 259
N + L L +N S I P A L + + N S P N L +
Sbjct: 171 NLSKLTTLKADDNKISDI---SPLASLPNLIEVHLKNNQISDVSPLANT----SNLFIVT 223
Query: 260 VSKNSFEGNIPYSISEMKELITLDLSRNNFSGELPRSIFSSCLSLETLDLSNNN 313
++ + + L+ ++ + + + S + + +L+ N
Sbjct: 224 LTNQTITNQPVF---YNNNLVVPNVVKGPSGAPIAPATISDNGTYASPNLTWNL 274
|
| >1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308 | Back alignment and structure |
|---|
Score = 66.3 bits (162), Expect = 4e-12
Identities = 45/231 (19%), Positives = 95/231 (41%), Gaps = 18/231 (7%)
Query: 252 FQKLIYLDVSKNSFEGNIPYSISEMKELITLDLSRNNFSGELPRSIFSSCLSLETLDLSN 311
I + K++ + +++ + TL + +L L+L +
Sbjct: 18 LANAIKIAAGKSNVTDTVT--QADLDGITTLSAFGTGVTT---IEGVQYLNNLIGLELKD 72
Query: 312 NNFYGQLFPNFMNLTHLSSLRLNNNHFSGKMADGLLSSTLLDVLDVSNNKLSGDIPHWIG 371
N NLT ++ L L+ N K + + LD+++ +++ P +
Sbjct: 73 NQI--TDLAPLKNLTKITELELSGNPL--KNVSAIAGLQSIKTLDLTSTQITDVTP--LA 126
Query: 372 NFSVLWLLLMSENYLQGSIPVQLGNLESLEFIDISENGLSVSMVSLSNLSSVKHIYLHNN 431
S L +L + N + P L L +L+++ I +S + L+NLS + + +N
Sbjct: 127 GLSNLQVLYLDLNQITNISP--LAGLTNLQYLSIGNAQVS-DLTPLANLSKLTTLKADDN 183
Query: 432 AINGLIPIALLRSSTLLTLDLRDNKFFGRIPHQINELSNLHFLLLRGNSLQ 482
I+ + P+A L + L+ + L++N+ P + SNL + L ++
Sbjct: 184 KISDISPLASLPN--LIEVHLKNNQISDVSP--LANTSNLFIVTLTNQTIT 230
|
| >1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308 | Back alignment and structure |
|---|
Score = 63.9 bits (156), Expect = 2e-11
Identities = 59/268 (22%), Positives = 101/268 (37%), Gaps = 22/268 (8%)
Query: 2 DSFGSLKQLKILNLGFNFFIDSILPYLNTLTSLTTLNLRYNKIEGSRTKQGICNLKNLLE 61
+ L L L L N D L L LT +T L L N + + I L+++
Sbjct: 57 EGVQYLNNLIGLELKDNQITD--LAPLKNLTKITELELSGNPL---KNVSAIAGLQSIKT 111
Query: 62 LDLSSNNFEGHLPQCLNNLTHLKVLDISYNQLSGNFPSVLTNLTSLEYLDLSFIDFQGTF 121
LDL+S L L++L+VL + NQ++ S L LT+L+YL +
Sbjct: 112 LDLTSTQITD--VTPLAGLSNLQVLYLDLNQITN--ISPLAGLTNLQYLSIGNAQVSD-- 165
Query: 122 LINSLANHSKLEVLVLSSGNDMLQVKTENWLPTYPLKVLQLSHCHLNVNSSFLLHQHHLK 181
+ LAN SKL L N + + LP L + L + ++ + S L + +L
Sbjct: 166 -LTPLANLSKLTTLKA-DDNKISDISPLASLPN--LIEVHLKNNQIS-DVSPLANTSNLF 220
Query: 182 FLDLSHNQLVGNFPTWLLQNNTGLEVLILWNNSFSGILPRLPNAKYDKLRHLDISTNNFS 241
+ L++ + N L V + + + +++ N S
Sbjct: 221 IVTLTNQTITNQPVF----YNNNLVVPNVVKGPSGAPIAPATISDNGTYASPNLTWNLTS 276
Query: 242 GKLPENLGIVFQKLIYLDVSKNSFEGNI 269
N+ F + + + F G +
Sbjct: 277 --FINNVSYTFNQSVTFKNTTVPFSGTV 302
|
| >1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308 | Back alignment and structure |
|---|
Score = 63.6 bits (155), Expect = 3e-11
Identities = 46/216 (21%), Positives = 87/216 (40%), Gaps = 19/216 (8%)
Query: 3 SFGSLKQLKILNLGFNFFIDSILPYLNTLTSLTTLNLRYNKIEGSRTKQGICNLKNLLEL 62
+ L + L+ + + L +L L L+ N+I + NL + EL
Sbjct: 36 TQADLDGITTLSAFGTGVTT--IEGVQYLNNLIGLELKDNQIT---DLAPLKNLTKITEL 90
Query: 63 DLSSNNFEGHLPQCLNNLTHLKVLDISYNQLSGNFPSVLTNLTSLEYLDLSFIDFQGTFL 122
+LS N + + L +K LD++ Q++ P L L++L+ L L
Sbjct: 91 ELSGNPLKN--VSAIAGLQSIKTLDLTSTQITDVTP--LAGLSNLQVLYLDLNQITN--- 143
Query: 123 INSLANHSKLEVLVLSSGNDMLQVKTENWLPTYPLKVLQLSHCHLNVNSSFLLHQHHLKF 182
I+ LA + L+ L + + + + L L L+ ++ + S L +L
Sbjct: 144 ISPLAGLTNLQYLSIGN-AQVSDLTPLANLSK--LTTLKADDNKIS-DISPLASLPNLIE 199
Query: 183 LDLSHNQLVGNFPTWLLQNNTGLEVLILWNNSFSGI 218
+ L +NQ+ P L N + L ++ L N + +
Sbjct: 200 VHLKNNQISDVSP---LANTSNLFIVTLTNQTITNQ 232
|
| >1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308 | Back alignment and structure |
|---|
Score = 62.0 bits (151), Expect = 9e-11
Identities = 45/258 (17%), Positives = 89/258 (34%), Gaps = 20/258 (7%)
Query: 199 LQNNTGLEVLILWNNSFSGILPRLPNAKYDKLRHLDISTNNFSGKLPENLGIVFQKLIYL 258
+ ++ + + + A D + L + + LI L
Sbjct: 15 DPALANAIKIAAGKSNVTDTVTQ---ADLDGITTLSAFGTGVT-TIEGVQY--LNNLIGL 68
Query: 259 DVSKNSFEGNIPYSISEMKELITLDLSRNNFSGELPRSIFSSCLSLETLDLSNNNFYGQL 318
++ N ++ + + ++ L+LS N + S++TLDL++
Sbjct: 69 ELKDNQIT-DLA-PLKNLTKITELELSGNPLKNVSA---IAGLQSIKTLDLTSTQITD-- 121
Query: 319 FPNFMNLTHLSSLRLNNNHFSGKMADGLLSSTLLDVLDVSNNKLSGDIPHWIGNFSVLWL 378
L++L L L+ N + L T L L + N ++S P + N S L
Sbjct: 122 VTPLAGLSNLQVLYLDLNQIT--NISPLAGLTNLQYLSIGNAQVSDLTP--LANLSKLTT 177
Query: 379 LLMSENYLQGSIPVQLGNLESLEFIDISENGLSVSMVSLSNLSSVKHIYLHNNAINGLIP 438
L +N + P L +L +L + + N +S + L+N S++ + L N I
Sbjct: 178 LKADDNKISDISP--LASLPNLIEVHLKNNQIS-DVSPLANTSNLFIVTLTNQTITNQPV 234
Query: 439 IALLRSSTLLTLDLRDNK 456
+
Sbjct: 235 FYNNNLVVPNVVKGPSGA 252
|
| >1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308 | Back alignment and structure |
|---|
Score = 43.1 bits (102), Expect = 1e-04
Identities = 33/173 (19%), Positives = 71/173 (41%), Gaps = 12/173 (6%)
Query: 309 LSNNNFYGQLFPNFMNLTHLSSLRLNNNHFSGKMADGLLSSTLLDVLDVSNNKLSGDIPH 368
++ +FP L + + ++ + + L + L ++ I
Sbjct: 3 ITQPTAINVIFP-DPALANAIKIAAGKSNVTDTVTQADLDG--ITTLSAFGTGVT-TIEG 58
Query: 369 WIGNFSVLWLLLMSENYLQGSIPVQLGNLESLEFIDISENGLSVSMVSLSNLSSVKHIYL 428
+ + L L + +N + P L NL + +++S N L ++ +++ L S+K + L
Sbjct: 59 -VQYLNNLIGLELKDNQITDLAP--LKNLTKITELELSGNPLK-NVSAIAGLQSIKTLDL 114
Query: 429 HNNAINGLIPIALLRSSTLLTLDLRDNKFFGRIPHQINELSNLHFLLLRGNSL 481
+ I + P+A L + L L L N+ P + L+NL +L + +
Sbjct: 115 TSTQITDVTPLAGLSN--LQVLYLDLNQITNISP--LAGLTNLQYLSIGNAQV 163
|
| >2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386 | Back alignment and structure |
|---|
Score = 69.7 bits (171), Expect = 4e-13
Identities = 57/347 (16%), Positives = 100/347 (28%), Gaps = 79/347 (22%)
Query: 10 LKILNLGFNFFID----SILPYLNTLTSLTTLNLRYNKI--EGSRT-KQGICNLKNLLEL 62
++ +L + S+ L S+ + L N I E +R + I + K+L
Sbjct: 6 IEGKSLKLDAITTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIA 65
Query: 63 DLSSNNFE----------GHLPQCLNNLTHLKVLDISYNQLSGN----FPSVLTNLTSLE 108
+ S L Q L L + +S N L+ T LE
Sbjct: 66 EFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLE 125
Query: 109 YLDLSF--IDFQGTFLINSLANHSKLEVLVLSSGNDMLQVKTENWLPTYPLKVLQLSHCH 166
+L L + Q +A L + N + PL+ +
Sbjct: 126 HLYLHNNGLGPQA---GAKIA-----RALQELAVNKKAKNAP-------PLRSIICGRNR 170
Query: 167 LNVNS-----SFLLHQHHLKFLDLSHNQL----VGNFPTWLLQNNTGLEVLILWNNSFSG 217
L S L + + N + + + L L+VL L +N+F+
Sbjct: 171 LENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFT- 229
Query: 218 ILPRLPNAKYDKLRHLDISTNNFSGKLPENLGIVFQKLIYLDVSKNSFEGNIPYSISEM- 276
+ ++ + L L L ++ ++ +
Sbjct: 230 ----------------HLGSSALAIALKSW-----PNLRELGLNDCLLSARGAAAVVDAF 268
Query: 277 -----KELITLDLSRNNFSGE----LPRSIFSSCLSLETLDLSNNNF 314
L TL L N + L I L L+L+ N F
Sbjct: 269 SKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRF 315
|
| >2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386 | Back alignment and structure |
|---|
Score = 69.0 bits (169), Expect = 7e-13
Identities = 62/378 (16%), Positives = 114/378 (30%), Gaps = 79/378 (20%)
Query: 33 SLTTLNLRYNKIEGSRTK---QGICNLKNLLELDLSSNNF--EG--HLPQCLNNLTHLKV 85
S+ +L+ + I K + ++ E+ LS N E L + + + L++
Sbjct: 5 SIEGKSLKLDAITTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEI 64
Query: 86 LDISYNQLS----------GNFPSVLTNLTSLEYLDLS---FIDFQGTFLINSLANHSKL 132
+ S L L + LS F LI+ L+ H+ L
Sbjct: 65 AEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPL 124
Query: 133 EVLVLSSGNDMLQVKTENWLPTYPLKVL--QLSHCHLNVNSSFLLHQHHLKFLDLSHNQL 190
E L L + N L + L +N + L+ + N+L
Sbjct: 125 EHLYLHN----------NGLGPQAGAKIARALQELAVNKK---AKNAPPLRSIICGRNRL 171
Query: 191 VGNFPTWL---LQNNTGLEVLILWNNSFS--GILPRLPNAKYD--KLRHLDISTNNFSGK 243
Q++ L + + N GI L +L+ LD+ N F+
Sbjct: 172 ENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHL 231
Query: 244 LPENLGIVFQKLIYLDVSKNSFEGNIPYSISEMKELITLDLSRNNFSGELPRSIFS---- 299
L I + L L L+ S ++
Sbjct: 232 GSSALAIA---------------------LKSWPNLRELGLNDCLLSARGAAAVVDAFSK 270
Query: 300 -SCLSLETLDLSNNNFY---GQLFPNFM--NLTHLSSLRLNNNHFS------GKMADGLL 347
+ L+TL L N + + + L L LN N FS ++ +
Sbjct: 271 LENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEEDDVVDEIREVFS 330
Query: 348 SSTLLDVLDVSNNKLSGD 365
+ ++ ++ + + D
Sbjct: 331 TRGRGELDELDDMEELTD 348
|
| >2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386 | Back alignment and structure |
|---|
Score = 65.1 bits (159), Expect = 1e-11
Identities = 50/268 (18%), Positives = 83/268 (30%), Gaps = 66/268 (24%)
Query: 6 SLKQLKILNLGFNFFID----------SILPYLNTLTSLTTLNLRYNKIEGSRTKQGICN 55
S K L+I F +L L L T+ L N G ++ + +
Sbjct: 58 SKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAF-GPTAQEPLID 116
Query: 56 L----KNLLELDLSSNNF-------------EGHLPQCLNNLTHLKVLDISYNQLSGN-- 96
L L L +N E + + N L+ + N+L
Sbjct: 117 FLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSM 176
Query: 97 --FPSVLTNLTSLEYLDLSF--IDFQG--TFLINSLANHSKLEVLVLSSGN--------- 141
+ + L + + I +G L+ LA +L+VL L N
Sbjct: 177 KEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDL-QDNTFTHLGSSA 235
Query: 142 --DMLQVKTENWLPTYPLKVLQLSHCHLNVNSSFLL-------HQHHLKFLDLSHNQL-- 190
L+ L+ L L+ C L+ + + L+ L L +N++
Sbjct: 236 LAIALKSWPN-------LRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIEL 288
Query: 191 --VGNFPTWLLQNNTGLEVLILWNNSFS 216
V T + + L L L N FS
Sbjct: 289 DAVRTLKTVIDEKMPDLLFLELNGNRFS 316
|
| >2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386 | Back alignment and structure |
|---|
Score = 58.2 bits (141), Expect = 2e-09
Identities = 55/316 (17%), Positives = 95/316 (30%), Gaps = 66/316 (20%)
Query: 157 LKVLQLSHCHLNVN-----SSFLLHQHHLKFLDLSHNQL-------VGNFPTWLLQNNTG 204
++ L + + LL +K + LS N + + + +
Sbjct: 6 IEGKSLKLDAITTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSE----NIASKKD 61
Query: 205 LEVLILWNNSFSGILPRLPNA---------KYDKLRHLDISTNNFSGKLPENLGIVFQK- 254
LE+ + + +P A K KL + +S N F E L K
Sbjct: 62 LEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKH 121
Query: 255 --LIYLDVSKNSF-------------EGNIPYSISEMKELITLDLSRNNFSGELPRSI-- 297
L +L + N E + L ++ RN +
Sbjct: 122 TPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAK 181
Query: 298 -FSSCLSLETLDLSNNNFYGQ-----LFPNFMNLTHLSSLRLNNNHFSGK----MADGLL 347
F S L T+ + N + L L L L +N F+ +A L
Sbjct: 182 TFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALK 241
Query: 348 SSTLLDVLDVSNNKLS-------GDIPHWIGNFSVLWLLLMSENYLQGSIPVQLG----- 395
S L L +++ LS D + N + L L N ++ L
Sbjct: 242 SWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRL-QYNEIELDAVRTLKTVIDE 300
Query: 396 NLESLEFIDISENGLS 411
+ L F++++ N S
Sbjct: 301 KMPDLLFLELNGNRFS 316
|
| >2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386 | Back alignment and structure |
|---|
Score = 57.8 bits (140), Expect = 3e-09
Identities = 50/317 (15%), Positives = 102/317 (32%), Gaps = 75/317 (23%)
Query: 180 LKFLDLSHNQLVGNFPTWL---LQNNTGLEVLILWNNSFS-----GILPRLPNAKYDKLR 231
++ L + + + L + ++ ++L N+ + + + K L
Sbjct: 6 IEGKSLKLDAITTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKK--DLE 63
Query: 232 HLDISTNNFSGKLPENLGIVFQKLIYLDVSKNSFEGNIPYSISEMKELITLDLSRNNFSG 291
+ S + F+G++ + + + L+ ++ + +L T+ LS N F
Sbjct: 64 IAEFS-DIFTGRVKDEIPEALRLLLQ--------------ALLKCPKLHTVRLSDNAFGP 108
Query: 292 ELPRSI---FSSCLSLETLDLSNNNF-------------YGQLFPNFMNLTHLSSLRLNN 335
+ S LE L L NN + N L S+
Sbjct: 109 TAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGR 168
Query: 336 NHFSGK----MADGLLSSTLLDVLDVSNNKLSGDIPHWIGNFSVLWLLLMSENYLQGSIP 391
N A S LL + + N I + LLL
Sbjct: 169 NRLENGSMKEWAKTFQSHRLLHTVKMVQNG--------IRPEGIEHLLLEG--------- 211
Query: 392 VQLGNLESLEFIDISENGLSVSMVS-----LSNLSSVKHIYLHNNAI--NGLIPIA---- 440
L + L+ +D+ +N + S L + +++ + L++ + G +
Sbjct: 212 --LAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFS 269
Query: 441 LLRSSTLLTLDLRDNKF 457
L + L TL L+ N+
Sbjct: 270 KLENIGLQTLRLQYNEI 286
|
| >2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386 | Back alignment and structure |
|---|
Score = 41.2 bits (97), Expect = 5e-04
Identities = 26/182 (14%), Positives = 59/182 (32%), Gaps = 40/182 (21%)
Query: 302 LSLETLDLSNNNFYGQ----LFPNFMNLTHLSSLRLNNNHFSGK----MADGLLSSTLLD 353
S+E L + + +F + + + L+ N + +++ + S L+
Sbjct: 4 FSIEGKSLKLDAITTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLE 63
Query: 354 VLDVSNNKLSGDIPHWIGNFSVLWLLLMSENYLQGSIPVQLGNLESLEFIDISENGLSVS 413
+ + S+ + G + + L L + +S+N +
Sbjct: 64 IAEFSDI--------FTGRVKDEIPEALR------LLLQALLKCPKLHTVRLSDNAFGPT 109
Query: 414 MVS-----LSNLSSVKHIYLHNNAI--NGLIPIA-----------LLRSSTLLTLDLRDN 455
LS + ++H+YLHNN + IA + L ++ N
Sbjct: 110 AQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRN 169
Query: 456 KF 457
+
Sbjct: 170 RL 171
|
| >2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276 | Back alignment and structure |
|---|
Score = 63.1 bits (154), Expect = 3e-11
Identities = 56/222 (25%), Positives = 87/222 (39%), Gaps = 22/222 (9%)
Query: 268 NIPYSISEMKELITLDLSRNNFSGELPRSIFSSCLSLETLDLSNNNFYGQLFPN--FMNL 325
N+P+S LDLS N L F S L+ LDLS Q + + +L
Sbjct: 25 NLPFSTKN------LDLSFNPLR-HLGSYSFFSFPELQVLDLSRCEI--QTIEDGAYQSL 75
Query: 326 THLSSLRLNNNHFSGKMADGLLSSTLLDVLDVSNNKLSGDIPHWIGNFSVLWLLLMSENY 385
+HLS+L L N + L L L+ IG+ L L ++ N
Sbjct: 76 SHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNL 135
Query: 386 LQGSIPVQ--LGNLESLEFIDISENGLSV----SMVSLSNLSSVK-HIYLHNNAINGLIP 438
+Q S + NL +LE +D+S N + + L + + + L N +N I
Sbjct: 136 IQ-SFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNF-IQ 193
Query: 439 IALLRSSTLLTLDLRDNKFFGRIPHQI-NELSNLHFLLLRGN 479
+ L L L N+ +P I + L++L + L N
Sbjct: 194 PGAFKEIRLKELALDTNQ-LKSVPDGIFDRLTSLQKIWLHTN 234
|
| >2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276 | Back alignment and structure |
|---|
Score = 62.3 bits (152), Expect = 5e-11
Identities = 54/214 (25%), Positives = 82/214 (38%), Gaps = 21/214 (9%)
Query: 230 LRHLDISTNNFSGKLPENLGIVFQKLIYLDVSKNSFEGNIPYSI-SEMKELITLDLSRNN 288
++LD+S N L F +L LD+S+ + I + L TL L+ N
Sbjct: 30 TKNLDLSFNPLR-HLGSYSFFSFPELQVLDLSRCEIQ-TIEDGAYQSLSHLSTLILTGNP 87
Query: 289 FSGELPRSIFSSCLSLETLDLSNNNFYGQLFPN--FMNLTHLSSLRLNNNHFSGKMADGL 346
L FS SL+ L N N +L L L + +N
Sbjct: 88 IQ-SLALGAFSGLSSLQKLVAVETNL--ASLENFPIGHLKTLKELNVAHNLIQSFKLPEY 144
Query: 347 LSS-TLLDVLDVSNNKLSGDIPHWIGNFSVL-------WLLLMSENYLQGSIPVQLGNLE 398
S+ T L+ LD+S+NK+ I + VL L +S N + I
Sbjct: 145 FSNLTNLEHLDLSSNKIQ-SIYC--TDLRVLHQMPLLNLSLDLSLNPMN-FIQPGAFKEI 200
Query: 399 SLEFIDISENGL-SVSMVSLSNLSSVKHIYLHNN 431
L+ + + N L SV L+S++ I+LH N
Sbjct: 201 RLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTN 234
|
| >2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276 | Back alignment and structure |
|---|
Score = 61.5 bits (150), Expect = 9e-11
Identities = 47/214 (21%), Positives = 78/214 (36%), Gaps = 19/214 (8%)
Query: 10 LKILNLGFNFFIDSILP-YLNTLTSLTTLNLRYNKIEGSRTKQGIC-NLKNLLELDLSSN 67
K L+L FN + + + L L+L +I + G +L +L L L+ N
Sbjct: 30 TKNLDLSFNP-LRHLGSYSFFSFPELQVLDLSRCEI--QTIEDGAYQSLSHLSTLILTGN 86
Query: 68 NFEGHLPQCLNNLTHLKVLDISYNQLSGNFPSVLTNLTSLEYLDLS-----FIDFQGTFL 122
+ + L+ L+ L L+ + +L +L+ L+++ F
Sbjct: 87 PIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYF- 145
Query: 123 INSLANHSKLEVLVLSSGN-DMLQVKTENWLP--TYPLKVLQLSHCHLNVNSSFLLHQHH 179
+N + LE L LSS + L L LS +N +
Sbjct: 146 ----SNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIR 201
Query: 180 LKFLDLSHNQLVGNFPTWLLQNNTGLEVLILWNN 213
LK L L NQL + P + T L+ + L N
Sbjct: 202 LKELALDTNQLK-SVPDGIFDRLTSLQKIWLHTN 234
|
| >2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276 | Back alignment and structure |
|---|
Score = 61.5 bits (150), Expect = 1e-10
Identities = 53/261 (20%), Positives = 86/261 (32%), Gaps = 61/261 (23%)
Query: 58 NLLELDLSSNNFEGHLPQCLNNLTHLKVLDISYNQLSGNFPSVLTNLTSLEYLDLSFIDF 117
+ LDLS N + L+VLD+S ++ +L+ L L L+
Sbjct: 29 STKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTG--- 85
Query: 118 QGTFLINSLANHSKLEVLVLSSGNDMLQVKTENWLPTYPLKVLQLSHCHLNVNSSFLLHQ 177
N + + L + + L + L+ L +L +F +
Sbjct: 86 ------NPIQS---------------LALGAFSGLSS--LQKLVAVETNLASLENFPIGH 122
Query: 178 -HHLKFLDLSHNQLVGNFPTW-LLQNNTGLEVLILWNNSFS----GILPRLPNAKYDKLR 231
LK L+++HN + +F N T LE L L +N L L L
Sbjct: 123 LKTLKELNVAHNLIQ-SFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLS 181
Query: 232 HLDISTNNFSGKLPENLGIVFQKLIYLDVSKNSFEGNIPYSISEMKELITLDLSRNNFSG 291
LD+S N + + F+++ L L L N
Sbjct: 182 -LDLSLNPMN-FIQPG---AFKEI----------------------RLKELALDTNQLK- 213
Query: 292 ELPRSIFSSCLSLETLDLSNN 312
+P IF SL+ + L N
Sbjct: 214 SVPDGIFDRLTSLQKIWLHTN 234
|
| >2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276 | Back alignment and structure |
|---|
Score = 59.2 bits (144), Expect = 6e-10
Identities = 53/305 (17%), Positives = 91/305 (29%), Gaps = 98/305 (32%)
Query: 32 TSLTTLNLRYNKIEGSRTKQGICNLKNLLELDLSSNNFEGHLPQCLNNLTHLKVLDISYN 91
S L+L +N + + + L LDLS + +L+HL L ++ N
Sbjct: 28 FSTKNLDLSFNPLRHLGSYS-FFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGN 86
Query: 92 QLSGNFPSVLTNLTSLEYLDLSFIDFQGTFLINSLANHSKLEVLVLSSGNDMLQVKTENW 151
+ + L+SL+ L +LA+
Sbjct: 87 PIQSLALGAFSGLSSLQKLVAVE---------TNLAS----------------------- 114
Query: 152 LPTYPLKVLQLSHCHLNVNSSFLLHQHHLKFLDLSHNQLVGNFPTWLLQNNTGLEVLILW 211
L +P+ L LK L+++HN + ++
Sbjct: 115 LENFPIGHL-----------------KTLKELNVAHNLI------------QSFKL---- 141
Query: 212 NNSFSGILPRLPNAKYDKLRHLDISTNNFSGKLPENLGIVFQKLIYLDVSKNSFEGNIPY 271
L N L HLD+S+N + + L + +
Sbjct: 142 ----PEYFSNLTN-----LEHLDLSSNKIQ-SIYCT---DLRVLHQMPLLN--------- 179
Query: 272 SISEMKELITLDLSRNNFSGELPRSIFSSCLSLETLDLSNNNFYGQLFPNFMNLTHLSSL 331
++LDLS N + + F + L+ L L N F LT L +
Sbjct: 180 --------LSLDLSLNPMN-FIQPGAFKE-IRLKELALDTNQLKSVPDGIFDRLTSLQKI 229
Query: 332 RLNNN 336
L+ N
Sbjct: 230 WLHTN 234
|
| >1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290 | Back alignment and structure |
|---|
Score = 62.8 bits (153), Expect = 4e-11
Identities = 54/204 (26%), Positives = 81/204 (39%), Gaps = 17/204 (8%)
Query: 281 TLDLSRNNFSGELPRSIFSSCLSLETLDLSNNNFYGQLFPNFMNLTHLSSLRLNNNHFSG 340
++ + N + LP + L LS N Y M T L+ L L+ +
Sbjct: 14 EVNCDKRNLT-ALPPDLPKD---TTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTK 69
Query: 341 KMADGLLSSTLLDVLDVSNNKLSGDIPHWIGNFSVLWLLLMSENYLQGSIPV----QLGN 396
DG L L LD+S+N+L +P L +L +S N L S+P+ LG
Sbjct: 70 LQVDGTLPV--LGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLT-SLPLGALRGLGE 125
Query: 397 LESLEFIDISENGL-SVSMVSLSNLSSVKHIYLHNNAINGLIPIALLRSSTLLTLDLRDN 455
L+ L + N L ++ L+ ++ + L NN + L L L TL L++N
Sbjct: 126 LQEL---YLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQEN 182
Query: 456 KFFGRIPHQINELSNLHFLLLRGN 479
IP L F L GN
Sbjct: 183 SL-YTIPKGFFGSHLLPFAFLHGN 205
|
| >1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290 | Back alignment and structure |
|---|
Score = 55.5 bits (134), Expect = 1e-08
Identities = 56/262 (21%), Positives = 85/262 (32%), Gaps = 68/262 (25%)
Query: 55 NLKNLLELDLSSNNFEGHLPQCLNNLTHLKVLDISYNQLSGNFPSVLTNLTSLEYLDLSF 114
+ + LE++ N LP + +L +S N L + L T L L+L
Sbjct: 8 KVASHLEVNCDKRNL-TALPP--DLPKDTTILHLSENLLYTFSLATLMPYTRLTQLNL-- 62
Query: 115 IDFQGTFLINSLANHSKLEVLVLSSGNDMLQVKTENWLPTYPLKVLQLSHCHLNVNSSFL 174
++ +++ + LP L L LSH L
Sbjct: 63 ------------------------DRAELTKLQVDGTLPV--LGTLDLSHNQLQSLPLLG 96
Query: 175 LHQHHLKFLDLSHNQLVGNFPTWLLQNNTGLEVLILWNNSFS----GILPRLPNAKYDKL 230
L LD+S N+L + P L+ L+ L L N G+L P L
Sbjct: 97 QTLPALTVLDVSFNRLT-SLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPK-----L 150
Query: 231 RHLDISTNNFSGKLPENLGIVFQKLIYLDVSKNSFEGNIPYSISEMKELITLDLSRNNFS 290
L ++ NN + +LP + L LD TL L N+
Sbjct: 151 EKLSLANNNLT-ELPAG---LLNGLENLD---------------------TLLLQENSLY 185
Query: 291 GELPRSIFSSCLSLETLDLSNN 312
+P+ F S L L N
Sbjct: 186 T-IPKGFFGS-HLLPFAFLHGN 205
|
| >1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290 | Back alignment and structure |
|---|
Score = 55.1 bits (133), Expect = 1e-08
Identities = 34/105 (32%), Positives = 45/105 (42%), Gaps = 6/105 (5%)
Query: 10 LKILNLGFNFFIDSILP-YLNTLTSLTTLNLRYNKIEGSRTKQGICNLKNLLELDLSSNN 68
IL+L N + + L T LT LNL ++ Q L L LDLS N
Sbjct: 33 TTILHLSENL-LYTFSLATLMPYTRLTQLNLDRAEL---TKLQVDGTLPVLGTLDLSHNQ 88
Query: 69 FEGHLPQCLNNLTHLKVLDISYNQLSGNFPSVLTNLTSLEYLDLS 113
+ LP L L VLD+S+N+L+ L L L+ L L
Sbjct: 89 LQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLK 132
|
| >1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290 | Back alignment and structure |
|---|
Score = 53.6 bits (129), Expect = 4e-08
Identities = 50/213 (23%), Positives = 73/213 (34%), Gaps = 44/213 (20%)
Query: 32 TSLTTLNLRYNKIEGSRTKQGICNLKNLLELDLSSNNFEGHLPQCLNNLTHLKVLDISYN 91
T L+L N + + + + L +L+L L L L LD+S+N
Sbjct: 31 KDTTILHLSENLLY-TFSLATLMPYTRLTQLNLDRAELT-KLQ-VDGTLPVLGTLDLSHN 87
Query: 92 QLSGNFPSVLTNLTSLEYLDLSFIDFQ----GTFLINSLANHSKLEVLVLSSGNDMLQVK 147
QL + P + L +L LD+SF G L L+ L L
Sbjct: 88 QLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGAL--RGLGE---LQELYLKG-------- 133
Query: 148 TENWLPTYPLKVLQLSHCHLNVNSSFLLHQHHLKFLDLSHNQLVGNFPTWLLQNNTGLEV 207
N L T P +L L+ L L++N L P LL L+
Sbjct: 134 --NELKTLPPGLLT--------------PTPKLEKLSLANNNLT-ELPAGLLNGLENLDT 176
Query: 208 LILWNNSFSGILPRLPNAKYD--KLRHLDISTN 238
L+L NS L +P + L + N
Sbjct: 177 LLLQENS----LYTIPKGFFGSHLLPFAFLHGN 205
|
| >1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290 | Back alignment and structure |
|---|
Score = 51.6 bits (124), Expect = 2e-07
Identities = 42/178 (23%), Positives = 70/178 (39%), Gaps = 10/178 (5%)
Query: 257 YLDVSKNSFEGNIPYSISEMKELITLDLSRNNFSGELPRSIFSSCLSLETLDLSNNNFYG 316
L +S+N ++ L L+L R + +L + + L TLDLS+N
Sbjct: 35 ILHLSENLLYTFSLATLMPYTRLTQLNLDRAELT-KLQ--VDGTLPVLGTLDLSHNQL-Q 90
Query: 317 QLFPNFMNLTHLSSLRLNNNHFSGKMADGLLSS-TLLDVLDVSNNKLSGDIPHWI-GNFS 374
L L L+ L ++ N + + G L L L + N+L +P +
Sbjct: 91 SLPLLGQTLPALTVLDVSFNRLT-SLPLGALRGLGELQELYLKGNELK-TLPPGLLTPTP 148
Query: 375 VLWLLLMSENYLQGSIPVQL-GNLESLEFIDISENGLSVSMVSLSNLSSVKHIYLHNN 431
L L ++ N L +P L LE+L+ + + EN L + +LH N
Sbjct: 149 KLEKLSLANNNLT-ELPAGLLNGLENLDTLLLQENSLYTIPKGFFGSHLLPFAFLHGN 205
|
| >1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290 | Back alignment and structure |
|---|
Score = 41.6 bits (98), Expect = 3e-04
Identities = 32/162 (19%), Positives = 58/162 (35%), Gaps = 7/162 (4%)
Query: 322 FMNLTHLSSLRLNNNHFSGKMADGLLSSTLLDVLDVSNNKLSGDIPHWIGNFSVLWLLLM 381
+ + + + + + L T +L +S N L + ++ L L +
Sbjct: 6 VSKVASHLEVNCDKRNLT-ALPPDLPKDT--TILHLSENLLYTFSLATLMPYTRLTQLNL 62
Query: 382 SENYLQGSIPVQLGNLESLEFIDISENGLSVSMVSLSNLSSVKHIYLHNNAINGLIPIAL 441
L + V G L L +D+S N L + L ++ + + N + L AL
Sbjct: 63 DRAELT-KLQV-DGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGAL 120
Query: 442 LRSSTLLTLDLRDNKFFGRIPHQI-NELSNLHFLLLRGNSLQ 482
L L L+ N+ +P + L L L N+L
Sbjct: 121 RGLGELQELYLKGNE-LKTLPPGLLTPTPKLEKLSLANNNLT 161
|
| >1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291 | Back alignment and structure |
|---|
Score = 62.4 bits (152), Expect = 6e-11
Identities = 45/230 (19%), Positives = 91/230 (39%), Gaps = 16/230 (6%)
Query: 252 FQKLIYLDVSKNSFEGNIPYSISEMKELITLDLSRNNFSGELPRSIFSSCLSLETLDLSN 311
F + I ++ K S + +E+ + + + ++ ++ L L+
Sbjct: 23 FAETIKDNLKKKSVTDAVT--QNELNSIDQIIANNSDIKSVQG---IQYLPNVTKLFLNG 77
Query: 312 NNFYGQLFPNFMNLTHLSSLRLNNNHFSGKMADGLLSSTLLDVLDVSNNKLSGDIPHWIG 371
N NL +L L L+ N L L L + +N +S DI +
Sbjct: 78 NKL--TDIKPLANLKNLGWLFLDENKVK--DLSSLKDLKKLKSLSLEHNGIS-DING-LV 131
Query: 372 NFSVLWLLLMSENYLQGSIPVQLGNLESLEFIDISENGLSVSMVSLSNLSSVKHIYLHNN 431
+ L L + N + L L L+ + + +N +S +V L+ L+ ++++YL N
Sbjct: 132 HLPQLESLYLGNNKITDITV--LSRLTKLDTLSLEDNQIS-DIVPLAGLTKLQNLYLSKN 188
Query: 432 AINGLIPIALLRSSTLLTLDLRDNKFFGRIPHQINELSNLHFLLLRGNSL 481
I+ L +A L++ L L+L + + + + L + + SL
Sbjct: 189 HISDLRALAGLKN--LDVLELFSQECLNKPINHQSNLVVPNTVKNTDGSL 236
|
| >1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291 | Back alignment and structure |
|---|
Score = 60.5 bits (147), Expect = 2e-10
Identities = 52/262 (19%), Positives = 103/262 (39%), Gaps = 25/262 (9%)
Query: 28 LNTLTSLTTLNLRYNKIEGSRTKQGICNLKNLLELDLSSNNFEGHLPQCLNNLTHLKVLD 87
+ NL+ + + T L ++ ++ ++++ + + Q + L ++ L
Sbjct: 20 DDAFAETIKDNLKKKSVTDAVT---QNELNSIDQIIANNSDIK-SV-QGIQYLPNVTKLF 74
Query: 88 ISYNQLSGNFPSVLTNLTSLEYLDLSFIDFQGTFLINSLANHSKLEVLVLSSGNDMLQVK 147
++ N+L+ P L NL +L +L L + ++SL + KL+ L L N + +
Sbjct: 75 LNGNKLTDIKP--LANLKNLGWLFLDENKVKD---LSSLKDLKKLKSLSL-EHNGISDIN 128
Query: 148 TENWLPTYPLKVLQLSHCHLNVNSSFLLHQHHLKFLDLSHNQLVGNFPTWLLQNNTGLEV 207
LP L+ L L + + + + L L L L NQ+ P L T L+
Sbjct: 129 GLVHLPQ--LESLYLGNNKIT-DITVLSRLTKLDTLSLEDNQISDIVP---LAGLTKLQN 182
Query: 208 LILWNNSFSGILPRLPNAKYDKLRHLDISTNNFSGKLPENLGIVFQKLIYLDVSKNSFEG 267
L L N S + A L L++ + K + L+ + KN+
Sbjct: 183 LYLSKNHISDL---RALAGLKNLDVLELFSQECLNKPINHQ----SNLVVPNTVKNTDGS 235
Query: 268 NI-PYSISEMKELITLDLSRNN 288
+ P IS+ + ++ +
Sbjct: 236 LVTPEIISDDGDYEKPNVKWHL 257
|
| >1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291 | Back alignment and structure |
|---|
Score = 57.8 bits (140), Expect = 2e-09
Identities = 38/135 (28%), Positives = 56/135 (41%), Gaps = 12/135 (8%)
Query: 4 FGSLKQLKILNLGFNFFIDSILPYLNTLTSLTTLNLRYNKIEGSRTKQGICNLKNLLELD 63
L + L L N D + L L +L L L NK+ + + +LK L L
Sbjct: 64 IQYLPNVTKLFLNGNKLTD--IKPLANLKNLGWLFLDENKV---KDLSSLKDLKKLKSLS 118
Query: 64 LSSNNFEGHLPQCLNNLTHLKVLDISYNQLSGNFPSVLTNLTSLEYLDLSFIDFQGTFLI 123
L N L +L L+ L + N+++ +VL+ LT L+ L L I
Sbjct: 119 LEHNGIS--DINGLVHLPQLESLYLGNNKITD--ITVLSRLTKLDTLSLEDNQISD---I 171
Query: 124 NSLANHSKLEVLVLS 138
LA +KL+ L LS
Sbjct: 172 VPLAGLTKLQNLYLS 186
|
| >1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291 | Back alignment and structure |
|---|
Score = 51.2 bits (123), Expect = 3e-07
Identities = 30/111 (27%), Positives = 46/111 (41%), Gaps = 7/111 (6%)
Query: 2 DSFGSLKQLKILNLGFNFFIDSILPYLNTLTSLTTLNLRYNKIEGSRTKQGICNLKNLLE 61
+ L QL+ L LG N D + L+ LT L TL+L N+I + L L
Sbjct: 128 NGLVHLPQLESLYLGNNKITD--ITVLSRLTKLDTLSLEDNQIS---DIVPLAGLTKLQN 182
Query: 62 LDLSSNNFEGHLPQCLNNLTHLKVLDISYNQLSGNFPSVLTNLTSLEYLDL 112
L LS N+ + L L +L VL++ + + +NL +
Sbjct: 183 LYLSKNHISD--LRALAGLKNLDVLELFSQECLNKPINHQSNLVVPNTVKN 231
|
| >1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291 | Back alignment and structure |
|---|
Score = 50.4 bits (121), Expect = 5e-07
Identities = 46/287 (16%), Positives = 86/287 (29%), Gaps = 73/287 (25%)
Query: 52 GICNLKNLLELDLSSNNFEGHLPQCLNNLTHLKVLDISYNQLSGNFPSVLTNLTSLEYLD 111
++ +L + N L + + + + + + L ++ L
Sbjct: 19 SDDAFAETIKDNLKKKSVTD--AVTQNELNSIDQIIANNSDIKSVQG--IQYLPNVTKLF 74
Query: 112 LSFIDFQGTFLINSLANHSKLEVLVLSSGNDMLQVKTENWLPTYPLKVLQLSHCHLNVNS 171
L+ + +L N L L L + +
Sbjct: 75 LNGNKLTDIKPLANLKN----------------------------LGWLFLDENKVK-DL 105
Query: 172 SFLLHQHHLKFLDLSHNQLVGNFPTWLLQNNTGLEVLILWNNSFSGI--LPRLPNAKYDK 229
S L LK L L HN + L + LE L L NN + I L RL
Sbjct: 106 SSLKDLKKLKSLSLEHNGISDING---LVHLPQLESLYLGNNKITDITVLSRLTK----- 157
Query: 230 LRHLDISTNNFSGKLPENLGIVFQKLIYLDVSKNSFEGNIPYSISEMKELITLDLSRNNF 289
L L + N S D+ ++ + +L L LS+N+
Sbjct: 158 LDTLSLEDNQIS-----------------DIV----------PLAGLTKLQNLYLSKNHI 190
Query: 290 SGELPRSIFSSCLSLETLDLSNNNFYGQLFPNFMNLTHLSSLRLNNN 336
S + +L+ L+L + + + NL ++++ +
Sbjct: 191 SDLRA---LAGLKNLDVLELFSQECLNKPINHQSNLVVPNTVKNTDG 234
|
| >1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291 | Back alignment and structure |
|---|
Score = 45.4 bits (108), Expect = 2e-05
Identities = 36/184 (19%), Positives = 72/184 (39%), Gaps = 36/184 (19%)
Query: 273 ISEMKELITLDLSRNNFSGELPRSIFSSCLSLETLDLSNNNFYGQLFPNFMNLTHLSSLR 332
E I +L + + + + + S++ + +N++ + L +++ L
Sbjct: 20 DDAFAETIKDNLKKKSVTDAVT---QNELNSIDQIIANNSDI--KSVQGIQYLPNVTKLF 74
Query: 333 LNNNHFSGKMADGLLSSTLLDVLDVSNNKLSGDIPHWIGNFSVLWLLLMSENYLQGSIPV 392
LN N + L + L L + NK+ D+
Sbjct: 75 LNGNKLT--DIKPLANLKNLGWLFLDENKVK-DL-------------------------S 106
Query: 393 QLGNLESLEFIDISENGLSVSMVSLSNLSSVKHIYLHNNAINGLIPIALLRSSTLLTLDL 452
L +L+ L+ + + NG+S + L +L ++ +YL NN I + ++ L L TL L
Sbjct: 107 SLKDLKKLKSLSLEHNGIS-DINGLVHLPQLESLYLGNNKITDITVLSRLTK--LDTLSL 163
Query: 453 RDNK 456
DN+
Sbjct: 164 EDNQ 167
|
| >4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350 | Back alignment and structure |
|---|
Score = 62.2 bits (151), Expect = 9e-11
Identities = 36/215 (16%), Positives = 75/215 (34%), Gaps = 11/215 (5%)
Query: 29 NTLTSLTTLNLRYNKIEGSRTKQGICNLKNLLELDLSSNNFEGHLP-QCLNNLTHLKVLD 87
+ + L K+ K +L ++++S N+ + +NL L +
Sbjct: 27 DLPRNAIELRFVLTKLR-VIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIR 85
Query: 88 IS-YNQLSGNFPSVLTNLTSLEYLDLSFIDFQGTFLINSLANHSKLEVLVLSSGNDMLQV 146
I N L P NL +L+YL +S + + + +L + N +
Sbjct: 86 IEKANNLLYINPEAFQNLPNLQYLLISNTGIK-HLPDVHKIHSLQKVLLDIQD-NINIHT 143
Query: 147 KTENWLP--TYPLKVLQLSHCHLNVNSSFLLHQHHLKFLDLSHNQLVGNFPTWLLQNNTG 204
N ++ +L L+ + + + L L+LS N + P + +G
Sbjct: 144 IERNSFVGLSFESVILWLNKNGIQEIHNSAFNGTQLDELNLSDNNNLEELPNDVFHGASG 203
Query: 205 LEVLILWNNSFSGILPRLPNAKYDKLRHLDISTNN 239
+L + + LP+ + L+ L +
Sbjct: 204 PVILDISRTR----IHSLPSYGLENLKKLRARSTY 234
|
| >4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350 | Back alignment and structure |
|---|
Score = 61.0 bits (148), Expect = 3e-10
Identities = 42/256 (16%), Positives = 82/256 (32%), Gaps = 16/256 (6%)
Query: 231 RHLDISTNNFSGKLPENLGIVFQKLIYLDVSKNSFEGNIPYSISEMKELITLDLSRNNFS 290
R + + ++P +L + I L + S +L +++S+N+
Sbjct: 12 RVFLCQESKVT-EIPSDL---PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVL 67
Query: 291 GELPRSIFSSCLSLETLDLSNNNFYGQLFPN-FMNLTHLSSLRLNNNHFSGKMADGLLSS 349
+ +FS+ L + + N + P F NL +L L ++N + S
Sbjct: 68 EVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHS 127
Query: 350 TLLDVLDVSNNKLSGDIPHWIGNF----SVLWLLLMSENYLQGSIPVQLGNLESLEFIDI 405
+LD+ +N I +F +L +++N +Q + E
Sbjct: 128 LQKVLLDIQDNINIHTIER--NSFVGLSFESVILWLNKNGIQEIHNSAFNGTQLDELNLS 185
Query: 406 SENGL-SVSMVSLSNLSSVKHIYLHNNAINGLIPIALLRSSTLLTLDLRDNKFFGRIPHQ 464
N L + S + + I+ L L L + K
Sbjct: 186 DNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYGLENLKKLRARSTYNLKKL----PT 241
Query: 465 INELSNLHFLLLRGNS 480
+ +L L L S
Sbjct: 242 LEKLVALMEASLTYPS 257
|
| >4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350 | Back alignment and structure |
|---|
Score = 54.8 bits (132), Expect = 2e-08
Identities = 27/115 (23%), Positives = 38/115 (33%), Gaps = 5/115 (4%)
Query: 2 DSFGSLKQLKILNLGFNFFIDSILPYL--NTLTSLTTLNLRYNKIEGSRTKQGICNLKNL 59
Q +L++ N I +I L L N I+ N L
Sbjct: 122 VHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHN--SAFNGTQL 179
Query: 60 LELDLSSNNFEGHLPQ-CLNNLTHLKVLDISYNQLSGNFPSVLTNLTSLEYLDLS 113
EL+LS NN LP + + +LDIS ++ L NL L
Sbjct: 180 DELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYGLENLKKLRARSTY 234
|
| >4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350 | Back alignment and structure |
|---|
Score = 52.5 bits (126), Expect = 1e-07
Identities = 41/242 (16%), Positives = 77/242 (31%), Gaps = 38/242 (15%)
Query: 2 DSFGSLKQLKILNLGFNFFIDSILPY-LNTLTSLTTLNL-RYNKIEGSRTKQGIC-NLKN 58
+F L+ + + N ++ I + L L + + + N + NL N
Sbjct: 48 GAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNL--LYINPEAFQNLPN 105
Query: 59 LLELDLSSNNFEGHLPQCLNNLTHLKVLDISYN-QLSGNFPSVLTNLTS-LEYLDLSFID 116
L L +S+ + + +LDI N + + L+ L L+
Sbjct: 106 LQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNG 165
Query: 117 FQGTFLINSLANHSKLEVLVLSSGNDMLQVKTENWLPTYPLKVLQLSHCHLNVNSSFLLH 176
+ NS N ++L+ L LS N L +V
Sbjct: 166 I--QEIHNSAFNGTQLDELNLSDNN-------------------NLEELPNDV----FHG 200
Query: 177 QHHLKFLDLSHNQLVGNFPTWLLQNNTGLEVLILWNNSFSGILPRLPNAKYDKLRHLDIS 236
LD+S ++ + P++ L+N L +N L +L L ++
Sbjct: 201 ASGPVILDISRTRIH-SLPSYGLENLKKLRARSTYNLKKLPTLEKLVA-----LMEASLT 254
Query: 237 TN 238
Sbjct: 255 YP 256
|
| >4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350 | Back alignment and structure |
|---|
Score = 44.4 bits (105), Expect = 5e-05
Identities = 33/211 (15%), Positives = 58/211 (27%), Gaps = 54/211 (25%)
Query: 277 KELITLDLSRNNFSGELPRSIFSSCLSLETLDLSNNNFYGQLFPN-FMNLTHLSSLRLNN 335
+ I L + + FS LE +++S N+ + + F NL L +R+
Sbjct: 30 RNAIELRFVLTKLR-VIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEK 88
Query: 336 NHFSGKMADGLLSSTLLDVLDVSNNKLSGDIPHWIGNFSVLWLLLMSENYLQGSIPVQ-L 394
N L I +
Sbjct: 89 A-----------------------NNLL-------------------------YINPEAF 100
Query: 395 GNLESLEFIDISENGL-SVSMVSLSNLSSVKHIYLHNNAINGLIPIALLR--SSTLLTLD 451
NL +L+++ IS G+ + V + + + +N I S + L
Sbjct: 101 QNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILW 160
Query: 452 LRDNKFFGRIPHQINELSNLHFLLLRGNSLQ 482
L N N L N+L+
Sbjct: 161 LNKNGIQEIHNSAFNGTQLDELNLSDNNNLE 191
|
| >2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361 | Back alignment and structure |
|---|
Score = 61.8 bits (150), Expect = 1e-10
Identities = 41/189 (21%), Positives = 69/189 (36%), Gaps = 17/189 (8%)
Query: 10 LKILNLGFNFFIDSILP--YLNTLTSLTTLNLRYNKIEGSRTKQGICNLKNLLELDLSSN 67
+L+L N + + LT+L +L L +N + + + + NL LDLSSN
Sbjct: 41 TALLDLSHNN-LSRLRAEWTPTRLTNLHSLLLSHNHLN-FISSEAFVPVPNLRYLDLSSN 98
Query: 68 NFEGHLPQCLNNLTHLKVLDISYNQLSGNFPSVLTNLTSLEYLDLSFIDFQ----GTFLI 123
+ ++L L+VL + N + + ++ L+ L LS
Sbjct: 99 HLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELI-- 156
Query: 124 NSLANHSKLEVLVLSSGN-DMLQVKTENWLPTYPLKVLQLSH------CHLNVNSSFLLH 176
KL +L LSS L + LP + L L + C L S +
Sbjct: 157 KDGNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGLYLHNNPLECDCKLYQLFSHWQY 216
Query: 177 QHHLKFLDL 185
+ +D
Sbjct: 217 RQLSSVMDF 225
|
| >2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361 | Back alignment and structure |
|---|
Score = 61.4 bits (149), Expect = 2e-10
Identities = 41/191 (21%), Positives = 69/191 (36%), Gaps = 36/191 (18%)
Query: 203 TGLEVLILWNNSFSGILPRLPNAKYDKLRHLDISTNNFSGKLPENLGIVFQKLIYLDVSK 262
+ +L L +N+ S + + L L +S N+ + + F +
Sbjct: 39 SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLN-FISSE---AFVPV------- 87
Query: 263 NSFEGNIPYSISEMKELITLDLSRNNFSGELPRSIFSSCLSLETLDLSNNNFYGQLFPN- 321
L LDLS N+ L +FS +LE L L NN+ +
Sbjct: 88 --------------PNLRYLDLSSNHLH-TLDEFLFSDLQALEVLLLYNNHI--VVVDRN 130
Query: 322 -FMNLTHLSSLRLNNNH---FSGKMADGLLSSTLLDVLDVSNNKLSGDIPHWIGNFSVLW 377
F ++ L L L+ N F ++ L +LD+S+NKL +P + L
Sbjct: 131 AFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLK-KLPL--TDLQKLP 187
Query: 378 LLLMSENYLQG 388
+ + YL
Sbjct: 188 AWVKNGLYLHN 198
|
| >2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361 | Back alignment and structure |
|---|
Score = 60.6 bits (147), Expect = 4e-10
Identities = 41/184 (22%), Positives = 67/184 (36%), Gaps = 31/184 (16%)
Query: 32 TSLTTLNLRYNKIEGSRTKQGICNLKNLLELDLSSNNFEGHLPQCLNNLTHLKVLDISYN 91
+ L+L +N + R + L NL L LS N+ + + +L+ LD+S N
Sbjct: 39 SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSN 98
Query: 92 QLSGNFPSVLTNLTSLEYLDLSFIDFQGTFLINSLANHSKLEVLVLSSGNDMLQVKTENW 151
L + ++L +LE L L ++ + V+ ++ DM Q
Sbjct: 99 HLHTLDEFLFSDLQALEVLLL---------------YNNHIVVVDRNAFEDMAQ------ 137
Query: 152 LPTYPLKVLQLSHCHLNV--NSSF--LLHQHHLKFLDLSHNQLVGNFPTWLLQNNTGLEV 207
L+ L LS ++ L LDLS N+L P LQ
Sbjct: 138 -----LQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKL-KKLPLTDLQKLPAWVK 191
Query: 208 LILW 211
L+
Sbjct: 192 NGLY 195
|
| >2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361 | Back alignment and structure |
|---|
Score = 59.5 bits (144), Expect = 8e-10
Identities = 44/175 (25%), Positives = 74/175 (42%), Gaps = 14/175 (8%)
Query: 269 IPYSISEMKELITLDLSRNNFSGELPRSIFSSCLSLETLDLSNNNFYGQLFPN--FMNLT 326
+P S+ LDLS NN S + +L +L LS+N+ + F+ +
Sbjct: 33 VPQSLP--SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHL--NFISSEAFVPVP 88
Query: 327 HLSSLRLNNNHFSGKMADGLLSSTLLDVLDVSNNKLSGDIPHWIGNFSVLWLLLMSENYL 386
+L L L++NH L+VL + NN + + + + L L +S+N +
Sbjct: 89 NLRYLDLSSNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQI 148
Query: 387 QGSIPVQ----LGNLESLEFIDISENGL-SVSMVSLSNLSSVKH--IYLHNNAIN 434
PV+ L L +D+S N L + + L L + +YLHNN +
Sbjct: 149 S-RFPVELIKDGNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGLYLHNNPLE 202
|
| >2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361 | Back alignment and structure |
|---|
Score = 58.7 bits (142), Expect = 1e-09
Identities = 49/191 (25%), Positives = 72/191 (37%), Gaps = 40/191 (20%)
Query: 179 HLKFLDLSHNQLVGNFPTWLLQNNTGLEVLILWNNSFSGILPR----LPNAKYDKLRHLD 234
+ LDLSHN L W T L L+L +N + I +PN LR+LD
Sbjct: 40 YTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPN-----LRYLD 94
Query: 235 ISTNNFSGKLPENLGIVFQKLIYLDVSKNSFEGNIPYSISEMKELITLDLSRNNFSGELP 294
+S+N+ L E +F L L+ L L N+ +
Sbjct: 95 LSSNHLH-TLDEF---LFSDLQALE---------------------VLLLYNNHIV-VVD 128
Query: 295 RSIFSSCLSLETLDLSNNN---FYGQLFPNFMNLTHLSSLRLNNNHFSGKMADGL--LSS 349
R+ F L+ L LS N F +L + L L L L++N L L +
Sbjct: 129 RNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLKKLPLTDLQKLPA 188
Query: 350 TLLDVLDVSNN 360
+ + L + NN
Sbjct: 189 WVKNGLYLHNN 199
|
| >2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361 | Back alignment and structure |
|---|
Score = 54.5 bits (131), Expect = 3e-08
Identities = 43/184 (23%), Positives = 79/184 (42%), Gaps = 15/184 (8%)
Query: 281 TLDLSRNNFSGELPRSIFSSCLSLETLDLSNNNFYGQLFPN--FMNLTHLSSLRLNNNHF 338
L S+ +P+S+ S LDLS+NN +L LT+L SL L++NH
Sbjct: 22 ILSCSKQQLP-NVPQSLPSY---TALLDLSHNNL-SRLRAEWTPTRLTNLHSLLLSHNHL 76
Query: 339 SGKMADGLLSSTLLDVLDVSNNKLSGDIPHWIGNFSVLWLLLMSENYLQGSIPV-QLGNL 397
+ ++ + L LD+S+N L + L +LL+ N++ + ++
Sbjct: 77 NFISSEAFVPVPNLRYLDLSSNHLHTLDEFLFSDLQALEVLLLYNNHIV-VVDRNAFEDM 135
Query: 398 ESLEFIDISENGLSV----SMVSLSNLSSVKHIYLHNNAINGLIPIAL--LRSSTLLTLD 451
L+ + +S+N +S + + L + + L +N + L L L + L
Sbjct: 136 AQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGLY 195
Query: 452 LRDN 455
L +N
Sbjct: 196 LHNN 199
|
| >2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361 | Back alignment and structure |
|---|
Score = 52.5 bits (126), Expect = 1e-07
Identities = 28/119 (23%), Positives = 49/119 (41%), Gaps = 10/119 (8%)
Query: 2 DSFGSLKQLKILNLGFNFFIDSILPY-LNTLTSLTTLNLRYNKIEGSRTKQGI-CNLKNL 59
++F + L+ L+L N + ++ + + L +L L L N I + ++ L
Sbjct: 82 EAFVPVPNLRYLDLSSN-HLHTLDEFLFSDLQALEVLLLYNNHI--VVVDRNAFEDMAQL 138
Query: 60 LELDLSSNNFEGHLP----QCLNNLTHLKVLDISYNQLSGNFPSVLTNLTSLEYLDLSF 114
+L LS N P + N L L +LD+S N+L + L L + L
Sbjct: 139 QKLYLSQNQIS-RFPVELIKDGNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGLYL 196
|
| >2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361 | Back alignment and structure |
|---|
Score = 47.9 bits (114), Expect = 4e-06
Identities = 39/141 (27%), Positives = 67/141 (47%), Gaps = 9/141 (6%)
Query: 349 STLLDVLDVSNNKLSGDIPHWI-GNFSVLWLLLMSENYLQGSIPVQ-LGNLESLEFIDIS 406
+ +LD+S+N LS W + L LL+S N+L I + + +L ++D+S
Sbjct: 38 PSYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLN-FISSEAFVPVPNLRYLDLS 96
Query: 407 ENGL-SVSMVSLSNLSSVKHIYLHNNAINGLIPIALLRSSTLLTLDLRDNKFFGRIPHQI 465
N L ++ S+L +++ + L+NN I + A + L L L N+ R P ++
Sbjct: 97 SNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQIS-RFPVEL 155
Query: 466 ----NELSNLHFLLLRGNSLQ 482
N+L L L L N L+
Sbjct: 156 IKDGNKLPKLMLLDLSSNKLK 176
|
| >1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198 | Back alignment and structure |
|---|
Score = 58.9 bits (143), Expect = 3e-10
Identities = 35/134 (26%), Positives = 56/134 (41%), Gaps = 7/134 (5%)
Query: 6 SLKQLKILNLGFNF-FIDSILPYLNTLTSLTTLNLRYNKIEGSRTKQGICNLKNLLELDL 64
+ + + L I+ + L+TL + L L N IE + ++NL L L
Sbjct: 21 VATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIE---KISSLSGMENLRILSL 77
Query: 65 SSNNFEGHLPQCLNNLTHLKVLDISYNQLSGNFPSVLTNLTSLEYLDLSFIDFQGTFLIN 124
N + + L+ L ISYNQ++ S + L +L L +S I+
Sbjct: 78 GRNLIK-KIENLDAVADTLEELWISYNQIA--SLSGIEKLVNLRVLYMSNNKITNWGEID 134
Query: 125 SLANHSKLEVLVLS 138
LA KLE L+L+
Sbjct: 135 KLAALDKLEDLLLA 148
|
| >1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198 | Back alignment and structure |
|---|
Score = 56.6 bits (137), Expect = 1e-09
Identities = 33/123 (26%), Positives = 52/123 (42%), Gaps = 15/123 (12%)
Query: 5 GSLKQLKILNLGFNFFIDSILPYLNTLTSLTTLNLRYNKIEGSRTKQGICNLKNLLELDL 64
++ L+IL+LG N I I +L L + YN+I + GI L NL L +
Sbjct: 67 SGMENLRILSLGRN-LIKKIENLDAVADTLEELWISYNQIA---SLSGIEKLVNLRVLYM 122
Query: 65 SSNNFEGHLP-QCLNNLTHLKVLDISYNQLSGNFPS----------VLTNLTSLEYLDLS 113
S+N L L L+ L ++ N L ++ V+ L +L+ LD
Sbjct: 123 SNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLDGM 182
Query: 114 FID 116
+D
Sbjct: 183 PVD 185
|
| >1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198 | Back alignment and structure |
|---|
Score = 51.2 bits (123), Expect = 9e-08
Identities = 33/113 (29%), Positives = 53/113 (46%), Gaps = 9/113 (7%)
Query: 3 SFGSLKQLKILNLGFNFFIDSILPYLNTLTSLTTLNLRYNKIEGSRTKQGICNLKNLLEL 62
+ +LK K L L N I+ I L+ + +L L+L N I + + L EL
Sbjct: 43 TLSTLKACKHLALSTN-NIEKISS-LSGMENLRILSLGRNLI--KKIENLDAVADTLEEL 98
Query: 63 DLSSNNFEGHLPQCLNNLTHLKVLDISYNQLSGNFPSV--LTNLTSLEYLDLS 113
+S N L + L +L+VL +S N+++ N+ + L L LE L L+
Sbjct: 99 WISYNQIA-SL-SGIEKLVNLRVLYMSNNKIT-NWGEIDKLAALDKLEDLLLA 148
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567 | Back alignment and structure |
|---|
Score = 59.0 bits (142), Expect = 2e-09
Identities = 55/330 (16%), Positives = 109/330 (33%), Gaps = 16/330 (4%)
Query: 155 YPLKVLQLSHCHLNVNSSFLLHQHHLKFLDLSHNQLVGNFPTWLLQNNTGLEVLILWNNS 214
Y +L + H + + + + S VG+ LL + + W
Sbjct: 231 YHRWLLGRAEPHDVLCCVHVSREEACLSVCFSRPLTVGSRMGTLLLMVDEAPLSVEWRTP 290
Query: 215 FSGILPRLPNAKYDKLRHLDISTNNFSGKLPENLGIVFQKLIYLDVSKNSFEGNIPYSIS 274
P L+ + ++ ++ + L + +
Sbjct: 291 DGRNRPSHVWLCDLPAASLNDQLPQHTFRVIWTGSDSQKECVLLKDRPECW----CRDSA 346
Query: 275 EMKELITLDLSRNNFSGELPRSIFSSCLSLETLDLSNNNFYGQLFPNFMNLTHLSSLRLN 334
++L +LS + +S SC L+ L+ N + L L +
Sbjct: 347 TDEQLFRCELSVEKS--TVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKET 404
Query: 335 NNHFSGKMADGLLSSTLLDVLDVSNNKLSGDIPHWIGNFSVLWLLLMSENYLQGSIPVQL 394
+FS A + LD +K + ++ + +L ++ L + L
Sbjct: 405 LQYFSTLKA---VDPMRAAYLDDLRSKFLLENSVLKMEYADVRVLHLAHKDLT-VLC-HL 459
Query: 395 GNLESLEFIDISENGLSVSMVSLSNLSSVKHIYLHNNAINGLIPIALLRSSTLLTLDLRD 454
L + +D+S N L +L+ L ++ + +NA+ + +A L L L L +
Sbjct: 460 EQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALENVDGVANLPR--LQELLLCN 517
Query: 455 NKF--FGRIPHQINELSNLHFLLLRGNSLQ 482
N+ I + L L L+GNSL
Sbjct: 518 NRLQQSAAIQP-LVSCPRLVLLNLQGNSLC 546
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567 | Back alignment and structure |
|---|
Score = 55.9 bits (134), Expect = 1e-08
Identities = 34/142 (23%), Positives = 52/142 (36%), Gaps = 11/142 (7%)
Query: 2 DSFGSLKQLKILNLGFNFFIDSIL-----PYLNTLTSLTTLNLRYNKIEGSRTKQGICNL 56
F +LK + + + + S + L+L + + + L
Sbjct: 406 QYFSTLKAVDPMRAAYLDDLRSKFLLENSVLKMEYADVRVLHLAHKDLT---VLCHLEQL 462
Query: 57 KNLLELDLSSNNFEGHLPQCLNNLTHLKVLDISYNQLSGNFPSVLTNLTSLEYLDLSFID 116
+ LDLS N LP L L L+VL S N L N + NL L+ L L
Sbjct: 463 LLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALE-NVDG-VANLPRLQELLLCNNR 519
Query: 117 FQGTFLINSLANHSKLEVLVLS 138
Q + I L + +L +L L
Sbjct: 520 LQQSAAIQPLVSCPRLVLLNLQ 541
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567 | Back alignment and structure |
|---|
Score = 47.8 bits (113), Expect = 6e-06
Identities = 18/89 (20%), Positives = 37/89 (41%), Gaps = 5/89 (5%)
Query: 2 DSFGSLKQLKILNLGFNFFIDSILPYLNTLTSLTTLNLRYNKIEGSRTKQGICNLKNLLE 61
+ +L+ L++L N + + + L L L L N+++ S Q + + L+
Sbjct: 480 PALAALRCLEVLQASDNALEN--VDGVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVL 537
Query: 62 LDLSSNNF---EGHLPQCLNNLTHLKVLD 87
L+L N+ EG + L + +
Sbjct: 538 LNLQGNSLCQEEGIQERLAEMLPSVSSIL 566
|
| >3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} Length = 362 | Back alignment and structure |
|---|
Score = 57.8 bits (140), Expect = 3e-09
Identities = 50/360 (13%), Positives = 102/360 (28%), Gaps = 76/360 (21%)
Query: 28 LNTLTSLTTLNLRYNKIEGSRTKQGIC-----NLKNLLELDLSSNNFEGHLPQCL----- 77
+ +T+L+L N + S + + ++ L+LS N+ L
Sbjct: 18 TSIPHGVTSLDLSLNNL-YSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILA 76
Query: 78 NNLTHLKVLDISYNQLSGNFPSVL-----TNLTSLEYLDLSFIDFQ---GTFLINSLANH 129
++ L++S N LS L ++ LDL + DF + + +N
Sbjct: 77 AIPANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNL 136
Query: 130 SKLEVLVLSSGNDMLQVKTENWLPTYPLKVLQLSHCHLNVNSSFLL------HQHHLKFL 183
+ L L L + SS L ++ L
Sbjct: 137 PA------------------------SITSLNLRGNDLGIKSSDELIQILAAIPANVNSL 172
Query: 184 DLSHNQL----VGNFPTWLLQNNTGLEVLILWNNSFS----GILPRLPNAKYDKLRHLDI 235
+L N L +L + L L N L + ++ + + L++
Sbjct: 173 NLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNL 232
Query: 236 STNNFSGKLPENLGIVFQK---LIYLDVSKNSFEG-------NIPYSISEMKELITLDLS 285
N G ENL ++ L + + + + + + ++++I +D +
Sbjct: 233 CLNCLHGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKN 292
Query: 286 RNNFSGE----LPRSIFSSCLSLETLDLSNNNFY-----GQLFPNFMNLTHLSSLRLNNN 336
+ I + L N + L
Sbjct: 293 GKEIHPSHSIPISNLIRELSGKADVPSLLNQCLIFAQKHQTNIEDLNIPDELRESIQTCK 352
|
| >3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} Length = 362 | Back alignment and structure |
|---|
Score = 56.3 bits (136), Expect = 8e-09
Identities = 49/296 (16%), Positives = 94/296 (31%), Gaps = 47/296 (15%)
Query: 171 SSFLLHQHHLKFLDLSHNQL----VGNFPTWLLQNNTGLEVLILWNNSFSGI----LPRL 222
F H + LDLS N L + L L NS L ++
Sbjct: 15 EEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQI 74
Query: 223 PNAKYDKLRHLDISTNNFSGK----LPENLGIVFQKLIYLDVSKNSFEGNIPYSISEM-- 276
A + L++S N S K L + L + + LD+ N F +
Sbjct: 75 LAAIPANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFS 134
Query: 277 ---KELITLDLSRNNFSGE----LPRSIFSSCLSLETLDLSNNNFY-------GQLFPNF 322
+ +L+L N+ + L + + + ++ +L+L NN + +
Sbjct: 135 NLPASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNLASKNCAELAKFLAS- 193
Query: 323 MNLTHLSSLRLNNNHFSGKMADGLLS-----STLLDVLDVSNNKLSGDIPHWIGNFSVLW 377
++SL L+ N K L + L++ N + S+
Sbjct: 194 -IPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNC--------LHGPSLEN 244
Query: 378 LLLMSENYLQGSIPVQLGNLESLEFIDISENGLSVSMVSLSNLSSVKHIYLHNNAI 433
L L+ +Q L+ ++S+ + N+ + + + I
Sbjct: 245 LKLL----KDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEI 296
|
| >3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} Length = 362 | Back alignment and structure |
|---|
Score = 54.3 bits (131), Expect = 3e-08
Identities = 48/305 (15%), Positives = 93/305 (30%), Gaps = 59/305 (19%)
Query: 99 SVLTNLTSLEYLDLSFIDFQGTFLINSLANHSKLEVLVLSSGNDMLQVKTENWLPTYPLK 158
+ + LDLS N+L + + L +
Sbjct: 16 EFTSIPHGVTSLDLSL---------NNL---YSISTVELIQ---AFAN------TPASVT 54
Query: 159 VLQLSHCHLNVN-----SSFLLHQH-HLKFLDLSHNQL----VGNFPTWLLQNNTGLEVL 208
L LS L L ++ L+LS N L L + VL
Sbjct: 55 SLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVL 114
Query: 209 ILWNNSFSG----ILPRLPNAKYDKLRHLDISTNNFSGK----LPENLGIVFQKLIYLDV 260
L N FS + + + L++ N+ K L + L + + L++
Sbjct: 115 DLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNL 174
Query: 261 SKNSFEGNIPYSISEM-----KELITLDLSRNNFSGE----LPRSIFSSCLSLETLDLSN 311
N+ +++ + +LDLS N + L S + +L+L
Sbjct: 175 RGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCL 234
Query: 312 NNFYGQ----LFPNFMNLTHLSSLRLNNNHFSGK-------MADGLLSSTLLDVLDVSNN 360
N +G L +L HL ++ L+ + + + + ++D +
Sbjct: 235 NCLHGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGK 294
Query: 361 KLSGD 365
++
Sbjct: 295 EIHPS 299
|
| >2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239 | Back alignment and structure |
|---|
Score = 56.2 bits (136), Expect = 3e-09
Identities = 39/211 (18%), Positives = 73/211 (34%), Gaps = 30/211 (14%)
Query: 278 ELITLDLSRNNFSGELPRSIFSSCLSLETLDLSNNNFYGQLFPN-FMNLTHLSSLRLNNN 336
TL L + +P FS+ ++ + +S + QL + F NL+ ++ + + N
Sbjct: 32 STQTLKLIETHLR-TIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNT 90
Query: 337 HFSGKMADGLLSS-TLLDVLDVSNNKLSGDIPH--WIGNFSVLWLLLMSENYLQGSIPVQ 393
+ L LL L + N L P + + + ++L +++N SIPV
Sbjct: 91 RNLTYIDPDALKELPLLKFLGIFNTGLK-MFPDLTKVYSTDIFFILEITDNPYMTSIPVN 149
Query: 394 LGNLESLEFIDISENGLSVSMVSLSNLSSVKHIYLHNNAINGLIPIALLRSSTLLTLDLR 453
+ L N + + L+NN + + L + L
Sbjct: 150 -------------------AFQGLCNET--LTLKLYNNGFTS-VQGYAFNGTKLDAVYLN 187
Query: 454 DNKFFGRIPHQI--NELSNLHFLLLRGNSLQ 482
NK+ I S L + S+
Sbjct: 188 KNKYLTVIDKDAFGGVYSGPSLLDVSQTSVT 218
|
| >2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239 | Back alignment and structure |
|---|
Score = 55.4 bits (134), Expect = 6e-09
Identities = 30/165 (18%), Positives = 59/165 (35%), Gaps = 12/165 (7%)
Query: 178 HHLKFLDLSHNQLVGNFPTWLLQNNTGLEVLILWNNSFSGILPRLPNAKYDKLRHLDIST 237
+ +++ + + + L+ L+ L ++N D L+I+
Sbjct: 80 SKVTHIEIRNTRNLTYIDPDALKELPLLKFLGIFNTGLKMFPDLTKVYSTDIFFILEITD 139
Query: 238 NNFSGKLPENLGIVFQKL----IYLDVSKNSFEGNIPYSISEMKELITLDLSRNNFSGEL 293
N + +P N FQ L + L + N F ++ +L + L++N + +
Sbjct: 140 NPYMTSIPVN---AFQGLCNETLTLKLYNNGFT-SVQGYAFNGTKLDAVYLNKNKYLTVI 195
Query: 294 PRSIFSSCLS-LETLDLSNNNFYGQLFPNFMNLTHLSSLRLNNNH 337
+ F S LD+S + P+ L HL L N
Sbjct: 196 DKDAFGGVYSGPSLLDVSQTSV--TALPSKG-LEHLKELIARNTW 237
|
| >2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239 | Back alignment and structure |
|---|
Score = 52.7 bits (127), Expect = 5e-08
Identities = 38/219 (17%), Positives = 75/219 (34%), Gaps = 18/219 (8%)
Query: 31 LTSLTTLNLRYNKIEGSRTKQGICNLKNLLELDLSSNNFEGHLP-QCLNNLTHLKVLDIS 89
S TL L + + NL N+ + +S + L NL+ + ++I
Sbjct: 30 PPSTQTLKLIETHLR-TIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIR 88
Query: 90 YNQ-LSGNFPSVLTNLTSLEYLDLS---FIDFQGTFLINSLANHSKLEVLVLSSGNDMLQ 145
+ L+ P L L L++L + F + S LE+ + N +
Sbjct: 89 NTRNLTYIDPDALKELPLLKFLGIFNTGLKMFPDLTKVYSTDIFFILEI----TDNPYMT 144
Query: 146 VKTENWLP--TYPLKVLQLSHCHLNVNSSFLLHQHHLKFLDLSHNQLVGNFPTWLLQN-N 202
N L+L + + + L + L+ N+ +
Sbjct: 145 SIPVNAFQGLCNETLTLKLYNNGFTSVQGYAFNGTKLDAVYLNKNKYLTVIDKDAFGGVY 204
Query: 203 TGLEVLILWNNSFSGILPRLPNAKYDKLRHLDISTNNFS 241
+G +L + S + LP+ + L+ L I+ N ++
Sbjct: 205 SGPSLLDVSQTSVT----ALPSKGLEHLKEL-IARNTWT 238
|
| >2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239 | Back alignment and structure |
|---|
Score = 50.0 bits (120), Expect = 4e-07
Identities = 34/229 (14%), Positives = 76/229 (33%), Gaps = 29/229 (12%)
Query: 255 LIYLDVSKNSFEGNIPYSISEMKELITLDLSRNNFSGELPRSIFSSCLSLETLDLSNNNF 314
L + + ++ S + + + +S + +L F + + +++ N
Sbjct: 33 TQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRN 92
Query: 315 YGQLFPN-FMNLTHLSSLRLNNNHFSGKMADGLLSS-TLLDVLDVSNNKLSGDIPHWI-- 370
+ P+ L L L + N + S + +L++++N IP
Sbjct: 93 LTYIDPDALKELPLLKFLGIFNTGLKMFPDLTKVYSTDIFFILEITDNPYMTSIPVNAFQ 152
Query: 371 GNFSVLWLLLMSENYLQGSIPVQLGNLESLEFIDISENGLSVSMVSLSNLSSVKHIYLHN 430
G + L + N S+ N L+ + +++N L+ +
Sbjct: 153 GLCNETLTLKLYNNGFT-SVQGYAFNGTKLDAVYLNKN---------KYLTV-----IDK 197
Query: 431 NAINGLIPIALLRSSTLLTLDLRDNKFFGRIPHQINELSNLHFLLLRGN 479
+A G+ S LD+ +P + L +L L+ R
Sbjct: 198 DAFGGV-------YSGPSLLDVSQTS-VTALPSKG--LEHLKELIARNT 236
|
| >2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239 | Back alignment and structure |
|---|
Score = 45.8 bits (109), Expect = 1e-05
Identities = 19/115 (16%), Positives = 41/115 (35%), Gaps = 4/115 (3%)
Query: 2 DSFGSLKQLKILNLGFNFFIDSILP-YLNTLTSLTTLNLRYNKIEGSRTKQGICNLKNLL 60
SF +L ++ + + + I P L L L L + ++ + +
Sbjct: 74 HSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLGIFNTGLKMFPDLTKVYSTDIFF 133
Query: 61 ELDLSSNNFEGHLP-QCLNNLT-HLKVLDISYNQLSGNFPSVLTNLTSLEYLDLS 113
L+++ N + +P L L + N + + N T L+ + L+
Sbjct: 134 ILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFT-SVQGYAFNGTKLDAVYLN 187
|
| >2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239 | Back alignment and structure |
|---|
Score = 43.8 bits (104), Expect = 5e-05
Identities = 31/220 (14%), Positives = 67/220 (30%), Gaps = 39/220 (17%)
Query: 2 DSFGSLKQLKILNLGFNFFIDSILPYL-NTLTSLTTLNLRYNKIEGSRTKQGICNLKNLL 60
+F +L + + + + + + + L+ +T + +R + + L L
Sbjct: 49 HAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLK 108
Query: 61 ELDLSSNNFEGHLPQC--LNNLTHLKVLDISYNQLSGNFPS-VLTNLTS-LEYLDLSFID 116
L + + + P + + +L+I+ N + P L + L L
Sbjct: 109 FLGIFNTGLK-MFPDLTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNG 167
Query: 117 FQ----GTFLINSLANHSKLEVLVLSSGNDMLQVKTENWLPTYPLKVLQLSHCHLNVNSS 172
F F N +KL+ + L+ L+ +
Sbjct: 168 FTSVQGYAF------NGTKLDAVYLNKNK-------------------YLTVIDKDA--- 199
Query: 173 FLLHQHHLKFLDLSHNQLVGNFPTWLLQNNTGLEVLILWN 212
F LD+S + P+ L++ L W
Sbjct: 200 FGGVYSGPSLLDVSQTSVT-ALPSKGLEHLKELIARNTWT 238
|
| >1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263 | Back alignment and structure |
|---|
Score = 56.2 bits (136), Expect = 4e-09
Identities = 45/188 (23%), Positives = 74/188 (39%), Gaps = 21/188 (11%)
Query: 6 SLKQLKILNLGFNFFIDSILPYLNTLTSLTTLNLRYNKIEGSRTKQGICNLKNLLELDLS 65
L NLG D L L+ + N + I ++ G+ NL EL LS
Sbjct: 17 GLANAVKQNLGKQSVTD--LVSQKELSGVQNFNGDNSNI---QSLAGMQFFTNLKELHLS 71
Query: 66 SNNFEGHLPQCLNNLTHLKVLDISYNQLSGNFPSVLTNLTSLEYLDLSFIDFQGTFL--I 123
N L +LT L+ L ++ N+ L NL + LS + L
Sbjct: 72 HNQISD--LSPLKDLTKLEELSVNRNR--------LKNLNGIPSACLSRLFLDNNELRDT 121
Query: 124 NSLANHSKLEVLVLSSGNDMLQVKTENWLPTYPLKVLQLSHCHLNVNSSFLLHQHHLKFL 183
+SL + LE+L + + N + + +L L+VL L + N+ L + ++
Sbjct: 122 DSLIHLKNLEILSIRN-NKLKSIVMLGFLSK--LEVLDLHGNEIT-NTGGLTRLKKVNWI 177
Query: 184 DLSHNQLV 191
DL+ + V
Sbjct: 178 DLTGQKCV 185
|
| >1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263 | Back alignment and structure |
|---|
Score = 54.3 bits (131), Expect = 2e-08
Identities = 41/184 (22%), Positives = 76/184 (41%), Gaps = 15/184 (8%)
Query: 273 ISEMKELITLDLSRNNFSGELPRSIFSSCLSLETLDLSNNNFYGQLFPNFMNLTHLSSLR 332
+ + +L + + + + ++ + N+N Q T+L L
Sbjct: 15 DPGLANAVKQNLGKQSVTDLVS---QKELSGVQNFNGDNSNI--QSLAGMQFFTNLKELH 69
Query: 333 LNNNHFSGKMADGLLSSTLLDVLDVSNNKLSGDIPHWIGNFSVLWLLLMSENYLQGSIPV 392
L++N S L T L+ L V+ N+L ++ + L L + N L+ +
Sbjct: 70 LSHNQIS--DLSPLKDLTKLEELSVNRNRLK-NLNG--IPSACLSRLFLDNNELRDTDS- 123
Query: 393 QLGNLESLEFIDISENGLSVSMVSLSNLSSVKHIYLHNNAINGLIPIALLRSSTLLTLDL 452
L +L++LE + I N L S+V L LS ++ + LH N I + L+ + +DL
Sbjct: 124 -LIHLKNLEILSIRNNKLK-SIVMLGFLSKLEVLDLHGNEITNTGGLTRLKK--VNWIDL 179
Query: 453 RDNK 456
K
Sbjct: 180 TGQK 183
|
| >1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263 | Back alignment and structure |
|---|
Score = 52.7 bits (127), Expect = 7e-08
Identities = 50/263 (19%), Positives = 91/263 (34%), Gaps = 50/263 (19%)
Query: 28 LNTLTSLTTLNLRYNKIEGSRTKQGICNLKNLLELDLSSNNFEGHLPQCLNNLTHLKVLD 87
L + NL + L + + ++N + + T+LK L
Sbjct: 15 DPGLANAVKQNLGKQSVT---DLVSQKELSGVQNFNGDNSNIQS--LAGMQFFTNLKELH 69
Query: 88 ISYNQLSGNFPSVLTNLTSLEYLDLSFIDFQGTFLINSLANHSKLEVLVLSSGNDMLQVK 147
+S+NQ+S S L +LT LE L ++ N L N + +
Sbjct: 70 LSHNQISD--LSPLKDLTKLEELSVNR---------NRLKNLNGIPSA------------ 106
Query: 148 TENWLPTYPLKVLQLSHCHLNVNSSFLLHQHHLKFLDLSHNQLVGNFPTWLLQNNTGLEV 207
L L L + L ++ L+H +L+ L + +N+L L + LEV
Sbjct: 107 --------CLSRLFLDNNELR-DTDSLIHLKNLEILSIRNNKLKSIVM---LGFLSKLEV 154
Query: 208 LILWNNSFSGILPRLPNAKYDKLRHLDISTNNFSGKLPENLGIVFQKLIYLDVSKNSFEG 267
L L N + + K+ +D++ N + +Q +Y+ + +G
Sbjct: 155 LDLHGNEITNTGGL---TRLKKVNWIDLTGQKCV-----NEPVKYQPELYITNTVKDPDG 206
Query: 268 NI--PYSISEMKELITLDLSRNN 288
PY IS + +
Sbjct: 207 RWISPYYISNGGSYVDGCVLWEL 229
|
| >1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263 | Back alignment and structure |
|---|
Score = 50.8 bits (122), Expect = 3e-07
Identities = 34/138 (24%), Positives = 50/138 (36%), Gaps = 13/138 (9%)
Query: 2 DSFGSLKQLKILNLGFNFFIDSILPYLNTLTSLTTLNLRYNKIEGSRTKQGICNLKNLLE 61
LK L+L N D L L LT L L++ N++ L
Sbjct: 57 AGMQFFTNLKELHLSHNQISD--LSPLKDLTKLEELSVNRNRL----KNLNGIPSACLSR 110
Query: 62 LDLSSNNFEGHLPQCLNNLTHLKVLDISYNQLSGNFPSVLTNLTSLEYLDLSFIDFQGTF 121
L L +N L +L +L++L I N+L +L L+ LE LDL
Sbjct: 111 LFLDNNELRD--TDSLIHLKNLEILSIRNNKLKS--IVMLGFLSKLEVLDLH---GNEIT 163
Query: 122 LINSLANHSKLEVLVLSS 139
L K+ + L+
Sbjct: 164 NTGGLTRLKKVNWIDLTG 181
|
| >1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263 | Back alignment and structure |
|---|
Score = 43.1 bits (102), Expect = 1e-04
Identities = 31/208 (14%), Positives = 60/208 (28%), Gaps = 22/208 (10%)
Query: 157 LKVLQLSHCHLNVNSSFLLHQHHLKFLDLSHNQLVGNFPTWLLQNNTGLEVLILWNNSFS 216
L + + ++ + ++ + +Q T L+ L L +N S
Sbjct: 21 AVKQNLGKQSVT-DLVSQKELSGVQNFNGDNSNIQSLAG---MQFFTNLKELHLSHNQIS 76
Query: 217 GI--LPRLPNAKYDKLRHLDISTNNFSGKLPENLGIVFQKLIYLDVSKNSFEGNIPYSIS 274
+ L L L L ++ N +L GI L L + N +
Sbjct: 77 DLSPLKDLTK-----LEELSVNRN----RLKNLNGIPSACLSRLFLDNNELRDTDS--LI 125
Query: 275 EMKELITLDLSRNNFSGELPRSIFSSCLSLETLDLSNNNFYGQLFPNFMNLTHLSSLRLN 334
+K L L + N + LE LDL N L ++ + L
Sbjct: 126 HLKNLEILSIRNNKLKSI---VMLGFLSKLEVLDLHGNEI--TNTGGLTRLKKVNWIDLT 180
Query: 335 NNHFSGKMADGLLSSTLLDVLDVSNNKL 362
+ + + + + +
Sbjct: 181 GQKCVNEPVKYQPELYITNTVKDPDGRW 208
|
| >1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263 | Back alignment and structure |
|---|
Score = 42.3 bits (100), Expect = 2e-04
Identities = 34/215 (15%), Positives = 73/215 (33%), Gaps = 21/215 (9%)
Query: 123 INSLANHSKLEVLVLSSGNDMLQVKTENWLPTYPLKVLQLSHCHLNVNSSFLLHQHHLKF 182
+ + L + + ++ L ++ + ++ + + + +LK
Sbjct: 12 VFPDPGLANAVKQNLG-KQSVTDLVSQKELSG--VQNFNGDNSNIQ-SLAGMQFFTNLKE 67
Query: 183 LDLSHNQLVGNFPTWLLQNNTGLEVLILWNNSFSGILPRLPNAKYDKLRHLDISTNNFSG 242
L LSHNQ+ P L++ T LE L + N L L L + N
Sbjct: 68 LHLSHNQISDLSP---LKDLTKLEELSVNRNRLK----NLNGIPSACLSRLFLDNNELRD 120
Query: 243 KLP-ENLGIVFQKLIYLDVSKNSFEGNIPYSISEMKELITLDLSRNNFSGELPRSIFSSC 301
+L + L L + N + +I + + +L LDL N + +
Sbjct: 121 TDSLIHL----KNLEILSIRNNKLK-SIV-MLGFLSKLEVLDLHGNEITNT---GGLTRL 171
Query: 302 LSLETLDLSNNNFYGQLFPNFMNLTHLSSLRLNNN 336
+ +DL+ + L ++++ +
Sbjct: 172 KKVNWIDLTGQKCVNEPVKYQPELYITNTVKDPDG 206
|
| >2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Length = 594 | Back alignment and structure |
|---|
Score = 57.6 bits (139), Expect = 5e-09
Identities = 60/353 (16%), Positives = 123/353 (34%), Gaps = 37/353 (10%)
Query: 2 DSFGSLKQLKILNLGFNFFIDSILPYLNTLTSLTTLNLRYNKIEGSRTKQGICNLKNLLE 61
D++ SL L I L ++ + +L +L L + + + L E
Sbjct: 181 DTYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRA-VPLEKLATLLQRAPQLEE 239
Query: 62 LDLSS------NNFEGHLPQCLNNLTHLKVLDISYNQLSGNFPSVLTNLTSLEYLDLSFI 115
L + L L+ L+ L ++ + P+V + + L L+LS+
Sbjct: 240 LGTGGYTAEVRPDVYSGLSVALSGCKELRCLSGFWDAVPAYLPAVYSVCSRLTTLNLSYA 299
Query: 116 DFQGTFLINSLANHSKLEVLVLSS--GNDMLQVKTENWLPTYPLKVLQLSHCHLNVNSSF 173
Q L+ L KL+ L + + L+V L+ L++
Sbjct: 300 TVQSYDLVKLLCQCPKLQRLWVLDYIEDAGLEVLASTCK---DLRELRVFPSE------P 350
Query: 174 LLHQHHLKFLDLSHNQLVGNFPTWLLQNNTGLEVLILW-----NNSFSGILPRLPNAKYD 228
+ + ++ + + P LE ++ + N + I PN
Sbjct: 351 FVMEPNVALTEQGLVSVSMGCPK--------LESVLYFCRQMTNAALITIARNRPNMTRF 402
Query: 229 KLRHLDISTNNFSGKLPENLGIV-----FQKLIYLDVSKNSFEGNIPYSISEMKELITLD 283
+L ++ ++ P ++G + L L +S + Y + K++ L
Sbjct: 403 RLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSGLLTDKVFEYIGTYAKKMEMLS 462
Query: 284 LSRNNFSGELPRSIFSSCLSLETLDLSNNNFYGQ-LFPNFMNLTHLSSLRLNN 335
++ S + S C SL L++ + F + L N L + SL +++
Sbjct: 463 VAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGDKALLANASKLETMRSLWMSS 515
|
| >2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Length = 594 | Back alignment and structure |
|---|
Score = 48.4 bits (115), Expect = 4e-06
Identities = 57/398 (14%), Positives = 114/398 (28%), Gaps = 42/398 (10%)
Query: 6 SLKQLKILNLGFNFFIDSILPYL-NTLTSLTTLNLRYNKIEGSRTKQGIC----NLKNLL 60
S L+ + L D L + + + L L + + G+ +NL
Sbjct: 103 SYTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCE---GFSTDGLAAIAATCRNLK 159
Query: 61 ELDLSSNNFEG----HLPQCLNNLTHLKVLDIS--YNQLSGN-FPSVLTNLTSLEYLDLS 113
ELDL ++ + L + T L L+IS +++S + ++T +L+ L L+
Sbjct: 160 ELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLN 219
Query: 114 FIDFQGTFLINSLANHSKLEVLVLSSGNDMLQVKTENWLPTYPLKVLQLSHCHLNVN--- 170
L L +LE L ++ + L +L +
Sbjct: 220 R-AVPLEKLATLLQRAPQLEELGTGGYTAEVRPDVYSGLSVALSGCKELRCLSGFWDAVP 278
Query: 171 ---SSFLLHQHHLKFLDLSHNQLVGNFPTWLLQNNTGLEVLILWNN----SFSGILPRLP 223
+ L L+LS+ + LL L+ L + + +
Sbjct: 279 AYLPAVYSVCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDYIEDAGLEVLASTCK 338
Query: 224 NAKYDKLRHLDISTNNFSGKL----PENLGIVFQKLIYLDVSKNSFEGNIPYSISE-MKE 278
+ + ++ + + L ++ + KL + +I+
Sbjct: 339 DLRELRVFPSEPFVMEPNVALTEQGLVSVSMGCPKLESVLYFCRQMTNAALITIARNRPN 398
Query: 279 LITLDLSRNNFSGELP----------RSIFSSCLSLETLDLSNNNFYGQLFPNFMNLTHL 328
+ L +I C L L LS +
Sbjct: 399 MTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSGLLTDKVFEYIGTYAKKM 458
Query: 329 SSLRLNNNHFSGKMADGLLSS-TLLDVLDVSNNKLSGD 365
L + S +LS L L++ +
Sbjct: 459 EMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGDK 496
|
| >2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347 | Back alignment and structure |
|---|
Score = 55.9 bits (134), Expect = 1e-08
Identities = 17/96 (17%), Positives = 31/96 (32%), Gaps = 3/96 (3%)
Query: 268 NIPYSISEMKELITLDLSRNNFSGELPRSIFSSCLSLETLDLSNNNFYGQLFPN-FMNLT 326
+ + + + L L + L L L + + + P+ F
Sbjct: 22 DSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGL-RFVAPDAFHFTP 80
Query: 327 HLSSLRLNNNHFSGKMADGLLSSTLLDVLDVSNNKL 362
LS L L+ N ++ + L L +S N L
Sbjct: 81 RLSRLNLSFNALE-SLSWKTVQGLSLQELVLSGNPL 115
|
| >2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347 | Back alignment and structure |
|---|
Score = 50.5 bits (120), Expect = 6e-07
Identities = 20/91 (21%), Positives = 34/91 (37%), Gaps = 1/91 (1%)
Query: 23 SILPYLNTLTSLTTLNLRYNKIEGSRTKQGICNLKNLLELDLSSNNFEGHLPQCLNNLTH 82
L +L +LT L + + + + L L L + + P +
Sbjct: 22 DSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPR 81
Query: 83 LKVLDISYNQLSGNFPSVLTNLTSLEYLDLS 113
L L++S+N L + L SL+ L LS
Sbjct: 82 LSRLNLSFNALESLSWKTVQGL-SLQELVLS 111
|
| >2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347 | Back alignment and structure |
|---|
Score = 43.6 bits (102), Expect = 8e-05
Identities = 18/96 (18%), Positives = 37/96 (38%), Gaps = 3/96 (3%)
Query: 389 SIPVQLGNLESLEFIDISENGL--SVSMVSLSNLSSVKHIYLHNNAINGLIPIALLRSST 446
L E+L + I + + L L ++++ + + + + P A +
Sbjct: 22 DSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPR 81
Query: 447 LLTLDLRDNKFFGRIPHQINELSNLHFLLLRGNSLQ 482
L L+L N + + + +L L+L GN L
Sbjct: 82 LSRLNLSFNA-LESLSWKTVQGLSLQELVLSGNPLH 116
|
| >2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347 | Back alignment and structure |
|---|
Score = 42.0 bits (98), Expect = 3e-04
Identities = 13/74 (17%), Positives = 24/74 (32%), Gaps = 10/74 (13%)
Query: 179 HLKFLDLSHNQLVGNFPTWLLQNNTGLEVLILWNNSFSGILP----RLPNAKYDKLRHLD 234
+L L + + Q + + L+ L L + + + P P L L+
Sbjct: 32 NLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPR-----LSRLN 86
Query: 235 ISTNNFSGKLPENL 248
+S N L
Sbjct: 87 LSFNALE-SLSWKT 99
|
| >2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347 | Back alignment and structure |
|---|
Score = 40.9 bits (95), Expect = 6e-04
Identities = 24/116 (20%), Positives = 33/116 (28%), Gaps = 27/116 (23%)
Query: 199 LQNNTGLEVLILWNNSFSGILPRLPNAKYDKLRHLDISTNNFSGKLPENLGIVFQKLIYL 258
L L L + N L +LR+L I +
Sbjct: 27 LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLR----------------- 69
Query: 259 DVSKNSFEGNIPYSISEMKELITLDLSRNNFSGELPRSIFSSCLSLETLDLSNNNF 314
V+ ++F L L+LS N L LSL+ L LS N
Sbjct: 70 FVAPDAFHF--------TPRLSRLNLSFNALE-SLSWKTVQG-LSLQELVLSGNPL 115
|
| >3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Length = 592 | Back alignment and structure |
|---|
Score = 55.7 bits (134), Expect = 2e-08
Identities = 55/322 (17%), Positives = 103/322 (31%), Gaps = 35/322 (10%)
Query: 6 SLKQLKILNLGFNFFIDSILPYL--NTLTSLTTLNLRY-NKIEGSRTKQGICNLKNLLEL 62
+L+QLK ++ D L L L TL L + + + + + L
Sbjct: 110 NLRQLKSVHFRRMIVSDLDLDRLAKARADDLETLKLDKCSGFTTDGLLSIVTHCRKIKTL 169
Query: 63 DLSSNNFEGHLPQCL----NNLTHLKVLDISYNQLSG----NFPSVLTNLTSLEYLDLSF 114
+ ++F + L + T L+VL+ + + + ++ N SL + +
Sbjct: 170 LMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGD 229
Query: 115 IDFQGTFLINSLANHSKLEVLVLSSGNDMLQVKTENWLPTYPLKVLQLSHCHLNVNSSFL 174
+ A + + + + + K N + L L LS+ N
Sbjct: 230 FEILELVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGPNEMPILF 289
Query: 175 LHQHHLKFLDLSHNQLVGNFPTWLLQNNTGLEVLILWN----NSFSGILPRLPNAKYDKL 230
++ LDL + L L+Q LEVL N + L
Sbjct: 290 PFAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETRNVIGDRGLEVLAQYCKQ-----L 344
Query: 231 RHLDIS-TNNFSGKLPENLGIVFQKLIYLDVSKNSFEGNIPYSISEMKELITLDLSRNNF 289
+ L I + G E + + LI L +EL + + ++
Sbjct: 345 KRLRIERGADEQGMEDEEGLVSQRGLIAL--------------AQGCQELEYMAVYVSDI 390
Query: 290 SGELPRSIFSSCLSLETLDLSN 311
+ E SI + +L L
Sbjct: 391 TNESLESIGTYLKNLCDFRLVL 412
|
| >3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens} Length = 372 | Back alignment and structure |
|---|
Score = 54.7 bits (132), Expect = 3e-08
Identities = 43/312 (13%), Positives = 85/312 (27%), Gaps = 44/312 (14%)
Query: 156 PLKVLQLSHCHLNVN--SSFLLHQHHLKFLDLSHNQL----VGNFPTWLLQNNTGLEVLI 209
P ++L H L+ L+L+ ++ L L+ +
Sbjct: 48 PSELLDHLFFHYEFQNQRFSAEVLSSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVN 107
Query: 210 LWNNSFSG-----ILPRLPNAKYDKLRHLDISTNNFSGKLPENLGIVFQ----KLIYLDV 260
L + +LP R L + N+ + ++L + ++ L +
Sbjct: 108 LASCQLDPAGLRTLLPVFLR-----ARKLGLQLNSLGPEACKDLRDLLLHDQCQITTLRL 162
Query: 261 SKNSFEGNIPYSISEM----KELITLDLSRNNFSGE----LPRSIFSSCLSLETLDLSNN 312
S N + E + L L E L + + L+ L+++ N
Sbjct: 163 SNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNR-QLQELNVAYN 221
Query: 313 NFYGQ----LFPNFMNLTHLSSLRLNNNHFS-------GKMADGLLSSTLLDVLDVSNNK 361
L L L L N S + + V
Sbjct: 222 GAGDTAALALARAAREHPSLELLHLYFNELSSEGRQVLRDLGGAAEGGARVVVSLTEGTA 281
Query: 362 LSGDIPHWIGNFSVLWLLLMSENYLQGSIPVQLGNLESLEFIDISENGLSVSMVSLSNLS 421
+S +W S + L S + + ++L + LE + L
Sbjct: 282 VS---EYWSVILSEVQRNLNSWDRARVQRHLELLLRD-LEDSRGATLNPWRKAQLLRVEG 337
Query: 422 SVKHIYLHNNAI 433
V+ + +
Sbjct: 338 EVRALLEQLGSS 349
|
| >3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens} Length = 372 | Back alignment and structure |
|---|
Score = 45.9 bits (109), Expect = 2e-05
Identities = 35/224 (15%), Positives = 63/224 (28%), Gaps = 43/224 (19%)
Query: 28 LNTLTSLTTLNLRYNKIEGSRTKQGIC-----NLKNLLELDLSSNNF-EGHLPQCLNNLT 81
L+SL LNL ++ + L E++L+S L L
Sbjct: 68 AEVLSSLRQLNLAGVRM-TPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFL 126
Query: 82 HLKVLDISYNQLSGN----FPSVLT-NLTSLEYLDLSFIDFQ---GTFLINSLANHSKLE 133
+ L + N L +L + + L LS L+ LA ++ +
Sbjct: 127 RARKLGLQLNSLGPEACKDLRDLLLHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVT 186
Query: 134 VLVLSSGN----------DMLQVKTENWLPTYPLKVLQLSHCHLNVN-----SSFLLHQH 178
L L L + L+ L +++ +
Sbjct: 187 HLSLLHTGLGDEGLELLAAQLDRNRQ-------LQELNVAYNGAGDTAALALARAAREHP 239
Query: 179 HLKFLDLSHNQLVGNFPTWL------LQNNTGLEVLILWNNSFS 216
L+ L L N+L L + + V + + S
Sbjct: 240 SLELLHLYFNELSSEGRQVLRDLGGAAEGGARVVVSLTEGTAVS 283
|
| >3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens} Length = 372 | Back alignment and structure |
|---|
Score = 44.7 bits (106), Expect = 4e-05
Identities = 41/258 (15%), Positives = 71/258 (27%), Gaps = 53/258 (20%)
Query: 6 SLKQLKILNLGFNFFIDSILPYL-NTLTSLTTLNLRYNKIEGSRTKQGIC-----NLKNL 59
L +NL + L L L L+ N + G + + + +
Sbjct: 99 GRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSL-GPEACKDLRDLLLHDQCQI 157
Query: 60 LELDLSSNNF--EG--HLPQCLNNLTHLKVLDISYNQLSGN----FPSVLTNLTSLEYLD 111
L LS+N G L + L T + L + + L + L L+ L+
Sbjct: 158 TTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELN 217
Query: 112 LS---FIDFQGTFLINSLANHSKLEVLVLSSGN----------DMLQVKTENWLPTYPLK 158
++ D L + H LE+L L D+ +
Sbjct: 218 VAYNGAGDTAALALARAAREHPSLELLHLYFNELSSEGRQVLRDLGGAAEGGAR----VV 273
Query: 159 VLQLSHCHLNVNSSFLL----------------HQHHLKFLDLSHNQLVGNFPTW----L 198
V ++ S +L L DL ++ W L
Sbjct: 274 VSLTEGTAVSEYWSVILSEVQRNLNSWDRARVQRHLELLLRDLEDSR-GATLNPWRKAQL 332
Query: 199 LQNNTGLEVLILWNNSFS 216
L+ + L+ S
Sbjct: 333 LRVEGEVRALLEQLGSSG 350
|
| >3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens} Length = 372 | Back alignment and structure |
|---|
Score = 41.2 bits (97), Expect = 6e-04
Identities = 23/194 (11%), Positives = 56/194 (28%), Gaps = 23/194 (11%)
Query: 186 SHNQLVGNFPTWLLQNNTGLEVLILWNNSFSGILPRLPNAKYDKLRHLDISTNNFSGKLP 245
+ ++ + + + LP ++ N
Sbjct: 10 HNRAVLAQLGCPIKNLDALENAQAIKKKLGKLGRQVLPPSELLDHLFFHYEFQNQRFSAE 69
Query: 246 ENLGIVFQKLIYLDVSKNSFEGNIPYSISEM-----KELITLDLSRNNFSGELPRSIFSS 300
L L+++ ++ + L ++L+ R++
Sbjct: 70 VL-----SSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPV 124
Query: 301 CLSLETLDLSNNNFY-------GQLFPNFMNLTHLSSLRLNNNHFSGK----MADGLLSS 349
L L L N+ L + + +++LRL+NN + + +GL +
Sbjct: 125 FLRARKLGLQLNSLGPEACKDLRDLLLH--DQCQITTLRLSNNPLTAAGVAVLMEGLAGN 182
Query: 350 TLLDVLDVSNNKLS 363
T + L + + L
Sbjct: 183 TSVTHLSLLHTGLG 196
|
| >2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220 | Back alignment and structure |
|---|
Score = 52.7 bits (127), Expect = 4e-08
Identities = 14/82 (17%), Positives = 27/82 (32%)
Query: 32 TSLTTLNLRYNKIEGSRTKQGICNLKNLLELDLSSNNFEGHLPQCLNNLTHLKVLDISYN 91
L L N+ L L +++ S+N + + + ++ N
Sbjct: 32 QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSN 91
Query: 92 QLSGNFPSVLTNLTSLEYLDLS 113
+L + L SL+ L L
Sbjct: 92 RLENVQHKMFKGLESLKTLMLR 113
|
| >2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220 | Back alignment and structure |
|---|
Score = 52.7 bits (127), Expect = 4e-08
Identities = 33/142 (23%), Positives = 54/142 (38%), Gaps = 14/142 (9%)
Query: 203 TGLEVLILWNNSFSGILPRLPNAKYDKLRHLDISTNNFSGKLPENLGIVFQKLI---YLD 259
L L NN F+ + K +LR ++ S N + + E F+ +
Sbjct: 32 QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKIT-DIEEG---AFEGASGVNEIL 87
Query: 260 VSKNSFEGNIPYSI-SEMKELITLDLSRNNFSGELPRSIFSSCLSLETLDLSNNNFYGQL 318
++ N E N+ + + ++ L TL L N + + F S+ L L +N
Sbjct: 88 LTSNRLE-NVQHKMFKGLESLKTLMLRSNRIT-CVGNDSFIGLSSVRLLSLYDNQI--TT 143
Query: 319 FPN--FMNLTHLSSLRLNNNHF 338
F L LS+L L N F
Sbjct: 144 VAPGAFDTLHSLSTLNLLANPF 165
|
| >2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220 | Back alignment and structure |
|---|
Score = 50.8 bits (122), Expect = 2e-07
Identities = 30/159 (18%), Positives = 58/159 (36%), Gaps = 33/159 (20%)
Query: 281 TLDLSRNNFSGELPRSIFSSCLSLETLDLSNNNFYGQLFPN-FMNLTHLSSLRLNNNH-- 337
L L+ N F+ IF L ++ SNN + F + ++ + L +N
Sbjct: 36 ELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKI-TDIEEGAFEGASGVNEILLTSNRLE 94
Query: 338 -FSGKMADGLLSSTLLDVLDVSNNKLSGDIPHWIGNFSVLWLLLMSENYLQGSIPVQLGN 396
KM GL L L + +N+++ + + +F
Sbjct: 95 NVQHKMFKGL---ESLKTLMLRSNRIT-CVGN--DSFI---------------------G 127
Query: 397 LESLEFIDISENGL-SVSMVSLSNLSSVKHIYLHNNAIN 434
L S+ + + +N + +V+ + L S+ + L N N
Sbjct: 128 LSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFN 166
|
| >2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220 | Back alignment and structure |
|---|
Score = 50.4 bits (121), Expect = 3e-07
Identities = 27/112 (24%), Positives = 46/112 (41%), Gaps = 3/112 (2%)
Query: 2 DSFGSLKQLKILNLGFNFFIDSILP-YLNTLTSLTTLNLRYNKIEGSRTKQGICNLKNLL 60
F L QL+ +N N I I + + + L N++E + + L++L
Sbjct: 51 GIFKKLPQLRKINFSNNK-ITDIEEGAFEGASGVNEILLTSNRLE-NVQHKMFKGLESLK 108
Query: 61 ELDLSSNNFEGHLPQCLNNLTHLKVLDISYNQLSGNFPSVLTNLTSLEYLDL 112
L L SN L+ +++L + NQ++ P L SL L+L
Sbjct: 109 TLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNL 160
|
| >3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251 | Back alignment and structure |
|---|
Score = 52.8 bits (127), Expect = 5e-08
Identities = 47/162 (29%), Positives = 67/162 (41%), Gaps = 24/162 (14%)
Query: 282 LDLSRNNFSGELPRSIFSSCLSLETLDLSNNNFYGQLFPN--FMNLTHLSSLRLNNNHFS 339
LDL + L + F L L+L N Q F +LT L +L L NN +
Sbjct: 40 LDLQSTGLA-TLSDATFRGLTKLTWLNLDYNQL--QTLSAGVFDDLTELGTLGLANNQLA 96
Query: 340 GKMADGLLSS-TLLDVLDVSNNKLSGDIPHWI----GNFSVLWLLLMSENYLQGSIPV-- 392
+ G+ T LD L + N+L +P + L L + N LQ SIP
Sbjct: 97 -SLPLGVFDHLTQLDKLYLGGNQLKS-LPSGVFDRLTKLKELRL---NTNQLQ-SIPAGA 150
Query: 393 --QLGNLESLEFIDISENGL-SVSMVSLSNLSSVKHIYLHNN 431
+L NL++L +S N L SV + L ++ I L N
Sbjct: 151 FDKLTNLQTL---SLSTNQLQSVPHGAFDRLGKLQTITLFGN 189
|
| >3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251 | Back alignment and structure |
|---|
Score = 45.5 bits (108), Expect = 1e-05
Identities = 30/104 (28%), Positives = 43/104 (41%), Gaps = 3/104 (2%)
Query: 11 KILNLGFNFFIDSILPYLNTLTSLTTLNLRYNKIEGSRTKQGICN-LKNLLELDLSSNNF 69
+ L+L LT LT LNL YN++ G+ + L L L L++N
Sbjct: 38 EKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQL--QTLSAGVFDDLTELGTLGLANNQL 95
Query: 70 EGHLPQCLNNLTHLKVLDISYNQLSGNFPSVLTNLTSLEYLDLS 113
++LT L L + NQL V LT L+ L L+
Sbjct: 96 ASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLN 139
|
| >3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251 | Back alignment and structure |
|---|
Score = 44.7 bits (106), Expect = 2e-05
Identities = 39/160 (24%), Positives = 58/160 (36%), Gaps = 12/160 (7%)
Query: 183 LDLSHNQLVGNFPTWLLQNNTGLEVLILWNNSFSGILPRLPNAKYDK---LRHLDISTNN 239
LDL L + T L L L N L L +D L L ++ N
Sbjct: 40 LDLQSTGLA-TLSDATFRGLTKLTWLNLDYNQ----LQTLSAGVFDDLTELGTLGLANNQ 94
Query: 240 FSGKLPENLGIVFQKLIYLDVSKNSFEGNIPYSI-SEMKELITLDLSRNNFSGELPRSIF 298
+ LP + +L L + N + +P + + +L L L+ N +P F
Sbjct: 95 LA-SLPLGVFDHLTQLDKLYLGGNQLKS-LPSGVFDRLTKLKELRLNTNQLQ-SIPAGAF 151
Query: 299 SSCLSLETLDLSNNNFYGQLFPNFMNLTHLSSLRLNNNHF 338
+L+TL LS N F L L ++ L N F
Sbjct: 152 DKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQF 191
|
| >3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251 | Back alignment and structure |
|---|
Score = 42.4 bits (100), Expect = 2e-04
Identities = 32/119 (26%), Positives = 49/119 (41%), Gaps = 21/119 (17%)
Query: 4 FGSLKQLKILNLGFNFFIDSILPYL-NTLTSLTTLNLRYNKI----EGSRTKQGICNLKN 58
F L +L L L N + S+ + + LT L L L N++ G + L
Sbjct: 79 FDDLTELGTLGLANNQ-LASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDR-----LTK 132
Query: 59 LLELDLSSNNFEGHLPQCL-----NNLTHLKVLDISYNQLSGNFPSVLTNLTSLEYLDL 112
L EL L++N Q + + LT+L+ L +S NQL L L+ + L
Sbjct: 133 LKELRLNTNQL-----QSIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITL 186
|
| >2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220 | Back alignment and structure |
|---|
Score = 51.6 bits (124), Expect = 9e-08
Identities = 28/112 (25%), Positives = 48/112 (42%), Gaps = 3/112 (2%)
Query: 2 DSFGSLKQLKILNLGFNFFIDSILP-YLNTLTSLTTLNLRYNKIEGSRTKQGICNLKNLL 60
+F K+L+ ++L N I + P L SL +L L NKI K L +L
Sbjct: 50 GAFSPYKKLRRIDLSNNQ-ISELAPDAFQGLRSLNSLVLYGNKIT-ELPKSLFEGLFSLQ 107
Query: 61 ELDLSSNNFEGHLPQCLNNLTHLKVLDISYNQLSGNFPSVLTNLTSLEYLDL 112
L L++N +L +L +L + N+L + L +++ + L
Sbjct: 108 LLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHL 159
|
| >2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220 | Back alignment and structure |
|---|
Score = 46.9 bits (112), Expect = 4e-06
Identities = 22/83 (26%), Positives = 34/83 (40%), Gaps = 3/83 (3%)
Query: 32 TSLTTLNLRYNKIEGSRTKQGI-CNLKNLLELDLSSNNFEGHLPQCLNNLTHLKVLDISY 90
++T + L N I G K L +DLS+N P L L L +
Sbjct: 32 ETITEIRLEQNTI--KVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYG 89
Query: 91 NQLSGNFPSVLTNLTSLEYLDLS 113
N+++ S+ L SL+ L L+
Sbjct: 90 NKITELPKSLFEGLFSLQLLLLN 112
|
| >2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220 | Back alignment and structure |
|---|
Score = 46.2 bits (110), Expect = 7e-06
Identities = 28/131 (21%), Positives = 52/131 (39%), Gaps = 8/131 (6%)
Query: 233 LDISTNNFSGKLPENLGIVFQKLIYLDVSKNSFEGNIPYSI-SEMKELITLDLSRNNFSG 291
+ + N +P ++KL +D+S N + ++ L +L L N +
Sbjct: 37 IRLEQNTIK-VIPPGAFSPYKKLRRIDLSNNQIS-ELAPDAFQGLRSLNSLVLYGNKIT- 93
Query: 292 ELPRSIFSSCLSLETLDLSNNNFYGQLFPN--FMNLTHLSSLRLNNNHFSGKMADGLLSS 349
ELP+S+F SL+ L L+ N F +L +L+ L L +N
Sbjct: 94 ELPKSLFEGLFSLQLLLLNANKI--NCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPL 151
Query: 350 TLLDVLDVSNN 360
+ + ++ N
Sbjct: 152 RAIQTMHLAQN 162
|
| >2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220 | Back alignment and structure |
|---|
Score = 42.7 bits (101), Expect = 9e-05
Identities = 28/139 (20%), Positives = 52/139 (37%), Gaps = 18/139 (12%)
Query: 183 LDLSHNQLVGNFPTWLLQNNTGLEVLILWNNSFSGILPRLPNAKYDKLRHL---DISTNN 239
+ L N + P L + L NN + L + LR L + N
Sbjct: 37 IRLEQNTIK-VIPPGAFSPYKKLRRIDLSNNQ----ISELAPDAFQGLRSLNSLVLYGNK 91
Query: 240 FSGKLPENLGIVFQKLI---YLDVSKNSFEGNIPYSI-SEMKELITLDLSRNNFSGELPR 295
+ +LP++ +F+ L L ++ N + ++ L L L N + +
Sbjct: 92 IT-ELPKS---LFEGLFSLQLLLLNANKIN-CLRVDAFQDLHNLNLLSLYDNKLQ-TIAK 145
Query: 296 SIFSSCLSLETLDLSNNNF 314
FS +++T+ L+ N F
Sbjct: 146 GTFSPLRAIQTMHLAQNPF 164
|
| >2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168 | Back alignment and structure |
|---|
Score = 50.5 bits (121), Expect = 1e-07
Identities = 33/117 (28%), Positives = 43/117 (36%), Gaps = 9/117 (7%)
Query: 5 GSLKQLKILNLGFNFFIDSILPYLNTLTSLTTLNLRYNKIEGSRTKQGICNLKNLLELDL 64
L+ L+L + L L L L L N+I G L NL L+L
Sbjct: 46 AEFVNLEFLSLINVGL--ISVSNLPKLPKLKKLELSENRIFGGLDMLA-EKLPNLTHLNL 102
Query: 65 SSNNFE--GHLPQCLNNLTHLKVLDISYN---QLSGNFPSVLTNLTSLEYLDLSFID 116
S N + L + L L LK LD+ L+ SV L L YLD +
Sbjct: 103 SGNKLKDISTL-EPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDRE 158
|
| >2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168 | Back alignment and structure |
|---|
Score = 49.7 bits (119), Expect = 2e-07
Identities = 27/113 (23%), Positives = 48/113 (42%), Gaps = 8/113 (7%)
Query: 3 SFGSLKQLKILNLGFNFFIDSILPYLNTLTSLTTLNLRYNKIEGSRTKQGICNLKNLLEL 62
+ ++++L + N N I +L L+L + + + L L +L
Sbjct: 22 TPAAVRELVLDNCKSN--DGKIEGLTAEFVNLEFLSLINVGL---ISVSNLPKLPKLKKL 76
Query: 63 DLSSNNFEGHLPQCLNNLTHLKVLDISYNQLSGNFPSV--LTNLTSLEYLDLS 113
+LS N G L L +L L++S N+L + ++ L L L+ LDL
Sbjct: 77 ELSENRIFGGLDMLAEKLPNLTHLNLSGNKLK-DISTLEPLKKLECLKSLDLF 128
|
| >2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168 | Back alignment and structure |
|---|
Score = 42.8 bits (101), Expect = 5e-05
Identities = 25/89 (28%), Positives = 36/89 (40%), Gaps = 3/89 (3%)
Query: 2 DSFGSLKQLKILNLGFNFFIDSILPYLNTLTSLTTLNLRYNKIEGSRTKQGICNLKNLLE 61
+ L +LK L L N + L +LT LNL NK++ T + + L+ L
Sbjct: 65 SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLNLSGNKLKDISTLEPLKKLECLKS 124
Query: 62 LDLSSN---NFEGHLPQCLNNLTHLKVLD 87
LDL + N + L L LD
Sbjct: 125 LDLFNCEVTNLNDYRESVFKLLPQLTYLD 153
|
| >2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168 | Back alignment and structure |
|---|
Score = 42.0 bits (99), Expect = 1e-04
Identities = 26/104 (25%), Positives = 42/104 (40%), Gaps = 4/104 (3%)
Query: 378 LLLMSENYLQGSIPVQLGNLESLEFIDISENGLSVSMVSLSNLSSVKHIYLHNNAINGLI 437
L+L + G I +LEF+ + GL S+ +L L +K + L N I G +
Sbjct: 29 LVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLI-SVSNLPKLPKLKKLELSENRIFGGL 87
Query: 438 PIALLRSSTLLTLDLRDNKF--FGRIPHQINELSNLHFLLLRGN 479
+ + L L+L NK + + +L L L L
Sbjct: 88 DMLAEKLPNLTHLNLSGNKLKDISTL-EPLKKLECLKSLDLFNC 130
|
| >2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168 | Back alignment and structure |
|---|
Score = 39.3 bits (92), Expect = 8e-04
Identities = 23/92 (25%), Positives = 37/92 (40%), Gaps = 5/92 (5%)
Query: 272 SISEMKELITLDLSRNNFSGELPRSIFSSCLSLETLDLSNNNFYGQLFPNFMNLTHLSSL 331
+ + ++EL LD ++N + + ++LE L L N N L L L
Sbjct: 22 TPAAVREL-VLDNCKSND--GKIEGLTAEFVNLEFLSLINVGL--ISVSNLPKLPKLKKL 76
Query: 332 RLNNNHFSGKMADGLLSSTLLDVLDVSNNKLS 363
L+ N G + L L++S NKL
Sbjct: 77 ELSENRIFGGLDMLAEKLPNLTHLNLSGNKLK 108
|
| >2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270 | Back alignment and structure |
|---|
Score = 51.9 bits (125), Expect = 1e-07
Identities = 35/112 (31%), Positives = 52/112 (46%), Gaps = 5/112 (4%)
Query: 4 FGSLKQLKILNLGFNFFIDSILPYL-NTLTSLTTLNLRYNKIEGSRTKQGIC-NLKNLLE 61
F L L L L N + S+ P + ++LT LT L+L YN++ +G+ L +L E
Sbjct: 105 FDQLVNLAELRLDRNQ-LKSLPPRVFDSLTKLTYLSLGYNEL--QSLPKGVFDKLTSLKE 161
Query: 62 LDLSSNNFEGHLPQCLNNLTHLKVLDISYNQLSGNFPSVLTNLTSLEYLDLS 113
L L +N + + LT LK L + NQL +L L+ L L
Sbjct: 162 LRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQ 213
|
| >2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270 | Back alignment and structure |
|---|
Score = 51.1 bits (123), Expect = 2e-07
Identities = 54/279 (19%), Positives = 78/279 (27%), Gaps = 101/279 (36%)
Query: 58 NLLELDLSSNNFEGHLPQCLNNLTHLKVLDISYNQLSGNFPSVLTNLTSLEYLDLSFIDF 117
+ +LDL SN + + LT L++L ++ N+L + L +LE L ++
Sbjct: 38 DTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVT---- 93
Query: 118 QGTFLINSLANHSKLEVLVLSSGNDMLQVKTENWLPTYPLKVLQLSHCHLNVNSSFLLHQ 177
+N L P+ V
Sbjct: 94 -------------------------------DNKLQALPIGVFD--------------QL 108
Query: 178 HHLKFLDLSHNQLVGNFPTWLLQNNTGLEVLILWNNSFSGILPRLPNAKYDKLRHLDIST 237
+L L L NQL L + L L +L +
Sbjct: 109 VNLAELRLDRNQL------------KSLP---------PRVFDSLTK-----LTYLSLGY 142
Query: 238 NNFSGKLPENLGIVFQKLIYLDVSKNSFEGNIPYSISEMKELITLDLSRNNFSGELPRSI 297
N LP+ VF KL L L L N +P
Sbjct: 143 NELQ-SLPKG---VFDKL---------------------TSLKELRLYNNQLK-RVPEGA 176
Query: 298 FSSCLSLETLDLSNNNFYGQLFPNFMNLTHLSSLRLNNN 336
F L+TL L NN F +L L L+L N
Sbjct: 177 FDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQEN 215
|
| >2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270 | Back alignment and structure |
|---|
Score = 49.2 bits (118), Expect = 1e-06
Identities = 49/202 (24%), Positives = 73/202 (36%), Gaps = 32/202 (15%)
Query: 282 LDLSRNNFSGELPRSIFSSCLSLETLDLSNNNFYGQLFPN--FMNLTHLSSLRLNNNHFS 339
LDL N S LP F L L L++N Q P F L +L +L + +N
Sbjct: 42 LDLQSNKLS-SLPSKAFHRLTKLRLLYLNDNKL--QTLPAGIFKELKNLETLWVTDNKLQ 98
Query: 340 GKMADGLLSSTLLDVLDVSNNKLSGDIPHWIGNFSVLWLLLMSENYLQGSIPVQLGNLES 399
L L + N+L L + L L
Sbjct: 99 ALPIGVFDQLVNLAELRLDRNQLK---------------------SLPPRVFDSLTKLTY 137
Query: 400 LEFIDISENGL-SVSMVSLSNLSSVKHIYLHNNAINGLIPIALLRSSTLLTLDLRDNKFF 458
L + N L S+ L+S+K + L+NN + + A + + L TL L +N+
Sbjct: 138 L---SLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQ-L 193
Query: 459 GRIPHQI-NELSNLHFLLLRGN 479
R+P + L L L L+ N
Sbjct: 194 KRVPEGAFDSLEKLKMLQLQEN 215
|
| >2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270 | Back alignment and structure |
|---|
Score = 47.7 bits (114), Expect = 3e-06
Identities = 31/113 (27%), Positives = 43/113 (38%), Gaps = 7/113 (6%)
Query: 4 FGSLKQLKILNLGFNFFIDSILP--YLNTLTSLTTLNLRYNKIEGSRTKQGIC-NLKNLL 60
F LK L+ L + N LP + L +L L L N++ + +L L
Sbjct: 81 FKELKNLETLWVTDNKL--QALPIGVFDQLVNLAELRLDRNQL--KSLPPRVFDSLTKLT 136
Query: 61 ELDLSSNNFEGHLPQCLNNLTHLKVLDISYNQLSGNFPSVLTNLTSLEYLDLS 113
L L N + + LT LK L + NQL LT L+ L L
Sbjct: 137 YLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLD 189
|
| >2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270 | Back alignment and structure |
|---|
Score = 46.1 bits (110), Expect = 9e-06
Identities = 47/196 (23%), Positives = 70/196 (35%), Gaps = 31/196 (15%)
Query: 32 TSLTTLNLRYNKIEGSRTKQGICNLKNLLELDLSSNNFEGHLPQCLNNLTHLKVLDISYN 91
L+L+ NK+ S + L L L L+ N + L +L+ L ++ N
Sbjct: 37 ADTKKLDLQSNKLS-SLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDN 95
Query: 92 QLSGNFPSVLTNLTSLEYLDLSFIDFQ----GTFLINSLANHSKLEVLVLSSGNDMLQVK 147
+L V L +L L L + F +SL +KL L L
Sbjct: 96 KLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVF--DSL---TKLTYLSLGY-------- 142
Query: 148 TENWLPTYP---------LKVLQLSHCHLNVNSSFLLHQ-HHLKFLDLSHNQLVGNFPTW 197
N L + P LK L+L + L + LK L L +NQL P
Sbjct: 143 --NELQSLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLK-RVPEG 199
Query: 198 LLQNNTGLEVLILWNN 213
+ L++L L N
Sbjct: 200 AFDSLEKLKMLQLQEN 215
|
| >2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270 | Back alignment and structure |
|---|
Score = 46.1 bits (110), Expect = 1e-05
Identities = 29/84 (34%), Positives = 37/84 (44%), Gaps = 3/84 (3%)
Query: 31 LTSLTTLNLRYNKIEGSRTKQGICN-LKNLLELDLSSNNFEGHLPQCLNNLTHLKVLDIS 89
LT L L L NK+ GI LKNL L ++ N + + L +L L +
Sbjct: 60 LTKLRLLYLNDNKL--QTLPAGIFKELKNLETLWVTDNKLQALPIGVFDQLVNLAELRLD 117
Query: 90 YNQLSGNFPSVLTNLTSLEYLDLS 113
NQL P V +LT L YL L
Sbjct: 118 RNQLKSLPPRVFDSLTKLTYLSLG 141
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 53.3 bits (127), Expect = 1e-07
Identities = 59/425 (13%), Positives = 103/425 (24%), Gaps = 129/425 (30%)
Query: 13 LNLGFNFFIDSILPYLNTLTSLTTLNLRYNKIEGSRTKQGICNLKNLLELDLSSNNFEGH 72
LNL +++L L L N S K I +++ L L S +
Sbjct: 187 LNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPY--- 243
Query: 73 LPQCL------NNLTHLKVLDISYNQLSGNFPSVLTNLTSLEYLDLSFIDFQGTFLINSL 126
CL N ++S L + T D FL +
Sbjct: 244 -ENCLLVLLNVQNAKAWNAFNLSCKIL------LTTR-------FKQVTD----FLSAAT 285
Query: 127 ANHSKLEVLVLSSGNDMLQVKTENWLPTYPLKVLQLSHCHLNVNSSFLLHQHHLKFLDLS 186
H L+ T + +V L +L + DL
Sbjct: 286 TTHISLD--------HHSMTLTPD-------EVKSLL-------LKYL----DCRPQDLP 319
Query: 187 HNQLVGNFPTWLLQNNTGLEV---LILWNNSFSGILPRLPNAKYDKLRH-LDISTNNFSG 242
+++ P + + L W+N + DKL ++ S N
Sbjct: 320 R-EVLTTNP--RRLSIIAESIRDGLATWDN--------WKHVNCDKLTTIIESSLNVLEP 368
Query: 243 ----KLPENLGIVFQKLIYLDVSKNSFEGNIPYSISEMKELITLDLSRNNFSGELPRSIF 298
K+ + L + F +IP L L + +
Sbjct: 369 AEYRKMFDRLSV-FPP----SA-------HIPTI--------LLSLIWFDVIKSDVMVVV 408
Query: 299 SSCLSLETLDLSNNNF----YGQLFPNFMNLTHLSSL------------RLNNNHFSGKM 342
+ ++ + L + +L +++
Sbjct: 409 NKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPY 468
Query: 343 ADG--------------------LLSSTLLDVLDVSNNKLSGDIPHWIGNFSVLWLLLMS 382
D L LD K+ D W + S+L L
Sbjct: 469 LDQYFYSHIGHHLKNIEHPERMTLFRMVFLD-FRFLEQKIRHDSTAWNASGSILNTLQQL 527
Query: 383 ENYLQ 387
+ Y
Sbjct: 528 KFYKP 532
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 44.1 bits (103), Expect = 9e-05
Identities = 55/324 (16%), Positives = 98/324 (30%), Gaps = 97/324 (29%)
Query: 176 HQHHLKF----LDLSHNQLVGNFPTWLLQNNTGLEVL-----ILWNNSFSGILPRLPNAK 226
H HH+ F + ++ F + N +V IL I+ +A
Sbjct: 3 HHHHMDFETGEHQYQYKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHII-MSKDAV 61
Query: 227 YDKLRHLDISTNNFSGKLPENLGIVFQKLIYLDVSKNSFEGNIPYSISEMKELITLDLSR 286
LR + E + QK + + N + +S +K
Sbjct: 62 SGTLRLFWTLLSK-----QEE---MVQKFV-----EEVLRINYKFLMSPIKT-------- 100
Query: 287 NNFSGELPRSIFSSCLSLETLDLSNNNFYGQLFPN--------FMNL-THLSSLRLNNNH 337
+ ++ L N+N Q+F ++ L L LR N
Sbjct: 101 EQRQPSMMTRMYIEQRD----RLYNDN---QVFAKYNVSRLQPYLKLRQALLELRPAKNV 153
Query: 338 F------SGKMADGLLSSTLLDVLDVSNN-----KLSGDIPHWI--GN-------FSVLW 377
SGK + + LDV + K+ I W+ N +L
Sbjct: 154 LIDGVLGSGK-------TWV--ALDVCLSYKVQCKMDFKI-FWLNLKNCNSPETVLEMLQ 203
Query: 378 LLL--MSENYLQG-----SIPVQLGNLESLEFIDISENGLSVSMVSLSNLSSVKHIYLHN 430
LL + N+ +I +++ ++++ + ++ L N+ + K
Sbjct: 204 KLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAW---- 259
Query: 431 NAINGLIPIALLRSSTLLTLDLRD 454
NA N L LLT R
Sbjct: 260 NAFN-------LSCKILLT--TRF 274
|
| >2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis} Length = 362 | Back alignment and structure |
|---|
Score = 52.3 bits (124), Expect = 2e-07
Identities = 31/248 (12%), Positives = 66/248 (26%), Gaps = 34/248 (13%)
Query: 128 NHSKLEVLVLSSGNDMLQVKTENWLPTYPLKVLQLSHCHLNVNSSFLLHQHHLKFLDLSH 187
+ + + + ++S S L L L +
Sbjct: 122 EDCSDIADGIVENKEKFAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKG 181
Query: 188 NQLVGNFPTWLLQNNTGLEVLILWNNSFSG-ILPRLPNAKYDKLRHLDI---STNNFSGK 243
+ + L+ L + + ++ + + L L + +
Sbjct: 182 TNNLS----IGKKPRPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDG 237
Query: 244 LPENLGIVFQKLIYLDVSKNSFEGNIPYSISEMKELITLDLSRNNFSGELPRSIFSSCL- 302
+F K L L + + S +
Sbjct: 238 DMNVFRPLFSK-------------------DRFPNLKWLGIVDAEEQNVVVEMFLESDIL 278
Query: 303 -SLETLDLSNNNFYG----QLFPNFMNLTHLSSLRLNNNHFSGKMADGLLSSTLLDVLDV 357
LET+D+S L + + HL + + N+ S +M L +L +DV
Sbjct: 279 PQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLSDEMKK-ELQKSLPMKIDV 337
Query: 358 SNNKLSGD 365
S+++ D
Sbjct: 338 SDSQEYDD 345
|
| >2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis} Length = 362 | Back alignment and structure |
|---|
Score = 48.0 bits (113), Expect = 4e-06
Identities = 17/89 (19%), Positives = 36/89 (40%), Gaps = 8/89 (8%)
Query: 14 NLGFNFFIDSILPYL--NTLTSLTTLNLRYNKIEGSRTKQ--GICNLKNLLELDLSSNNF 69
+ GF+ ++ P + +L L + + + + L L +D+S+
Sbjct: 232 DYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVL 291
Query: 70 EG----HLPQCLNNLTHLKVLDISYNQLS 94
L ++ + HLK +++ YN LS
Sbjct: 292 TDEGARLLLDHVDKIKHLKFINMKYNYLS 320
|
| >2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis} Length = 362 | Back alignment and structure |
|---|
Score = 44.2 bits (103), Expect = 6e-05
Identities = 36/245 (14%), Positives = 72/245 (29%), Gaps = 33/245 (13%)
Query: 185 LSHNQLVGNFPTWLLQNNTGLEVLILWNNSFSGILPRLPNAKYDKLRHLDISTNNFSGKL 244
L +L + E + + + + +D S
Sbjct: 101 LKDKKLPSLKQITIGXWGYEGEDCSDIADGIVENKEKFAHFEGLFWGDIDFEEQEISWIE 160
Query: 245 PENLGIVFQKLIYLDVSKNSFEGNIPYSISEMKELITLDLSRNNFSGELPRSIFSSCL-S 303
+L V + L+ K N+ L +L++ + I S L +
Sbjct: 161 QVDLSPVLDAMPLLNNLKIKGTNNLSIGKKPRPNLKSLEIISGGLPDSVVEDILGSDLPN 220
Query: 304 LETLDLS-NNNFYG--------QLFPNFMNLTHLSSLRLNNNHFSGKMADGLLSSTL--- 351
LE L L YG + + +L L + + + + L S +
Sbjct: 221 LEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQ 280
Query: 352 LDVLDVSNNKLSGDIPHWIGNFSVLWLLLMSENYLQGSIPVQLGNLESLEFIDISENGLS 411
L+ +D+S L+ + + + ++ L+FI++ N LS
Sbjct: 281 LETMDISAGVLTDEGA--------------------RLLLDHVDKIKHLKFINMKYNYLS 320
Query: 412 VSMVS 416
M
Sbjct: 321 DEMKK 325
|
| >2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis} Length = 362 | Back alignment and structure |
|---|
Score = 43.4 bits (101), Expect = 9e-05
Identities = 19/125 (15%), Positives = 39/125 (31%), Gaps = 17/125 (13%)
Query: 6 SLKQLKILNLGFNFFIDSILPYLNT--LTSLTTLNLRY--NKIEGSRTKQGIC------N 55
LK L + DS++ + L +L L L
Sbjct: 191 PRPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDR 250
Query: 56 LKNLLELDLSSNNFEGHLPQCL---NNLTHLKVLDISYNQLSGN----FPSVLTNLTSLE 108
NL L + + + + + L L+ +DIS L+ + + L+
Sbjct: 251 FPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLK 310
Query: 109 YLDLS 113
++++
Sbjct: 311 FINMK 315
|
| >1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176 | Back alignment and structure |
|---|
Score = 50.0 bits (120), Expect = 2e-07
Identities = 25/114 (21%), Positives = 42/114 (36%), Gaps = 7/114 (6%)
Query: 2 DSFGSLKQLKILNLGFNFFIDSILPYLNTLTSLTTLNLRYNKIEGSRTKQGICNLKNLLE 61
+ + + + L+L I I TL ++ N+I R G L+ L
Sbjct: 13 AQYTNAVRDRELDLRGYK-IPVIENLGATLDQFDAIDFSDNEI---RKLDGFPLLRRLKT 68
Query: 62 LDLSSNNFEGHLPQCLNNLTHLKVLDISYNQLSGNFPSV--LTNLTSLEYLDLS 113
L +++N L L L ++ N L + L +L SL YL +
Sbjct: 69 LLVNNNRICRIGEGLDQALPDLTELILTNNSLV-ELGDLDPLASLKSLTYLCIL 121
|
| >1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176 | Back alignment and structure |
|---|
Score = 47.7 bits (114), Expect = 1e-06
Identities = 27/116 (23%), Positives = 43/116 (37%), Gaps = 9/116 (7%)
Query: 6 SLKQLKILNLGFNFFIDSILPYLNTLTSLTTLNLRYNKIEGSRTKQGICNLKNLLELDLS 65
+L Q ++ N L L L TL + N+I L +L EL L+
Sbjct: 40 TLDQFDAIDFSDNEIRK--LDGFPLLRRLKTLLVNNNRICRIGEGLD-QALPDLTELILT 96
Query: 66 SNNFE--GHLPQCLNNLTHLKVLDISYNQLSGNF---PSVLTNLTSLEYLDLSFID 116
+N+ G L L +L L L I N ++ V+ + + LD +
Sbjct: 97 NNSLVELGDL-DPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLDFQKVK 151
|
| >1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176 | Back alignment and structure |
|---|
Score = 40.8 bits (96), Expect = 3e-04
Identities = 24/156 (15%), Positives = 53/156 (33%), Gaps = 16/156 (10%)
Query: 159 VLQLSHCHLNVNSSFLLHQHHLKFLDLSHNQLVGNFPTWLLQNNTGLEVLILWNNSFSGI 218
+++L+ + ++ + + LDL ++ L + + +N +
Sbjct: 1 MVKLTAELIE-QAAQYTNAVRDRELDLRGYKI--PVIENLGATLDQFDAIDFSDNEIRKL 57
Query: 219 --LPRLPNAKYDKLRHLDISTNNFSGKLPENLGIVFQKLIYLDVSKNSFEG-NIPYSISE 275
P L L+ L ++ N ++ E L L L ++ NS ++
Sbjct: 58 DGFPLLRR-----LKTLLVNNNRIC-RIGEGLDQALPDLTELILTNNSLVELGDLDPLAS 111
Query: 276 MKELITLDLSRNNFSGELP---RSIFSSCLSLETLD 308
+K L L + RN + + + LD
Sbjct: 112 LKSLTYLCILRNPVT-NKKHYRLYVIYKVPQVRVLD 146
|
| >2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149 | Back alignment and structure |
|---|
Score = 48.9 bits (117), Expect = 3e-07
Identities = 24/112 (21%), Positives = 44/112 (39%), Gaps = 6/112 (5%)
Query: 3 SFGSLKQLKILNLGFNFFIDSILPYLNTLTSLTTLNLRYNKIEGSRTKQGICNLKNLLEL 62
+ +K+L + N N + + L L+ + + + L L +L
Sbjct: 15 TPSDVKELVLDNSRSN--EGKLEGLTDEFEELEFLSTINVGLT---SIANLPKLNKLKKL 69
Query: 63 DLSSNNFEGHLPQCLNNLTHLKVLDISYNQLSG-NFPSVLTNLTSLEYLDLS 113
+LS N G L +L L++S N++ + L L +L+ LDL
Sbjct: 70 ELSDNRVSGGLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLF 121
|
| >2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149 | Back alignment and structure |
|---|
Score = 45.8 bits (109), Expect = 4e-06
Identities = 27/110 (24%), Positives = 43/110 (39%), Gaps = 7/110 (6%)
Query: 6 SLKQLKILNLGFNFFIDSILPYLNTLTSLTTLNLRYNKIEGSRTKQGICNLKNLLELDLS 65
++L+ L+ + L L L L L N++ G NL L+LS
Sbjct: 40 EFEELEFLSTINVGLTS--IANLPKLNKLKKLELSDNRVSGGLEVLA-EKCPNLTHLNLS 96
Query: 66 SNNFEG-HLPQCLNNLTHLKVLDISYNQLSGNF---PSVLTNLTSLEYLD 111
N + + L L +LK LD+ +++ +V L L YLD
Sbjct: 97 GNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLD 146
|
| >2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149 | Back alignment and structure |
|---|
Score = 39.7 bits (93), Expect = 5e-04
Identities = 26/103 (25%), Positives = 46/103 (44%), Gaps = 2/103 (1%)
Query: 378 LLLMSENYLQGSIPVQLGNLESLEFIDISENGLSVSMVSLSNLSSVKHIYLHNNAINGLI 437
L+L + +G + E LEF+ GL+ S+ +L L+ +K + L +N ++G +
Sbjct: 22 LVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLT-SIANLPKLNKLKKLELSDNRVSGGL 80
Query: 438 PIALLRSSTLLTLDLRDNKFFG-RIPHQINELSNLHFLLLRGN 479
+ + L L+L NK + +L NL L L
Sbjct: 81 EVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNC 123
|
| >2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A Length = 336 | Back alignment and structure |
|---|
Score = 48.7 bits (116), Expect = 2e-06
Identities = 52/243 (21%), Positives = 88/243 (36%), Gaps = 12/243 (4%)
Query: 7 LKQLKILNLGFNFFIDSILPYLNTLTSLTTLNLRYNKIEGSRTKQGICNLKNLLELDLSS 66
L Q I F+D L + + ++L + IE S + L L L
Sbjct: 68 LSQGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEG 127
Query: 67 NNFEGHLPQCLNNLTHLKVLDISY-NQLSGN-FPSVLTNLTSLEYLDLSFIDFQGTFLIN 124
+ L ++L L++S + S ++L++ + L+ L+LS+ +
Sbjct: 128 LRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQ 187
Query: 125 SLANHS--KLEVLVLSSGNDMLQVKTENWLPTY--PLKVLQLSHCHLNVNSSF--LLHQH 178
H + L LS LQ + L L L LS + N F +
Sbjct: 188 VAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLN 247
Query: 179 HLKFLDLSHNQLVGNFPTWLLQNNTGLEVLILWNNSFSGILPRLPNAKYDKLRHLDISTN 238
+L+ L LS + L L+ L ++ G L L A L HL I+ +
Sbjct: 248 YLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGIVPDGTLQLLKEA----LPHLQINCS 303
Query: 239 NFS 241
+F+
Sbjct: 304 HFT 306
|
| >3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} Length = 229 | Back alignment and structure |
|---|
Score = 47.8 bits (114), Expect = 2e-06
Identities = 36/154 (23%), Positives = 58/154 (37%), Gaps = 33/154 (21%)
Query: 282 LDLSRNNFSGELPRSIFSSCLSLETLDLSNNNFYGQLFPN--FMNLTHLSSLRLNNNHFS 339
L L N + +L +F S ++L+ L L +N P F +LT L+ L L N +
Sbjct: 45 LYLHDNQIT-KLEPGVFDSLINLKELYLGSNQL--GALPVGVFDSLTQLTVLDLGTNQLT 101
Query: 340 GKMADGLLSS-TLLDVLDVSNNKLSGDIPHWIGNFSVLWLLLMSENYLQGSIPVQLGNLE 398
+ + L L + NKL+ +P + L
Sbjct: 102 -VLPSAVFDRLVHLKELFMCCNKLT-------------------------ELPRGIERLT 135
Query: 399 SLEFIDISENGL-SVSMVSLSNLSSVKHIYLHNN 431
L + + +N L S+ + LSS+ H YL N
Sbjct: 136 HLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGN 169
|
| >3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} Length = 229 | Back alignment and structure |
|---|
Score = 45.8 bits (109), Expect = 9e-06
Identities = 37/112 (33%), Positives = 51/112 (45%), Gaps = 8/112 (7%)
Query: 4 FGSLKQLKILNLGFNFFIDSILPY--LNTLTSLTTLNLRYNKIEGSRTKQGICN-LKNLL 60
F SL LK L LG N LP ++LT LT L+L N++ + + L +L
Sbjct: 60 FDSLINLKELYLGSNQL--GALPVGVFDSLTQLTVLDLGTNQLT--VLPSAVFDRLVHLK 115
Query: 61 ELDLSSNNFEGHLPQCLNNLTHLKVLDISYNQLSGNFPSVLTNLTSLEYLDL 112
EL + N LP+ + LTHL L + NQL L+SL + L
Sbjct: 116 ELFMCCNKLTE-LPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYL 166
|
| >3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} Length = 229 | Back alignment and structure |
|---|
Score = 40.1 bits (94), Expect = 8e-04
Identities = 36/136 (26%), Positives = 51/136 (37%), Gaps = 17/136 (12%)
Query: 183 LDLSHNQLVGNFPTWLLQNNTGLEVLILWNNSFSGILPRLPNAKYDK---LRHLDISTNN 239
L L NQ+ + + L+ L L +N L LP +D L LD+ TN
Sbjct: 45 LYLHDNQIT-KLEPGVFDSLINLKELYLGSNQ----LGALPVGVFDSLTQLTVLDLGTNQ 99
Query: 240 FSGKLPENLGIVFQKLI---YLDVSKNSFEGNIPYSISEMKELITLDLSRNNFSGELPRS 296
+ LP VF +L+ L + N +P I + L L L +N +P
Sbjct: 100 LT-VLPSA---VFDRLVHLKELFMCCNKLT-ELPRGIERLTHLTHLALDQNQLKS-IPHG 153
Query: 297 IFSSCLSLETLDLSNN 312
F SL L N
Sbjct: 154 AFDRLSSLTHAYLFGN 169
|
| >1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7 Length = 192 | Back alignment and structure |
|---|
Score = 45.0 bits (107), Expect = 1e-05
Identities = 18/82 (21%), Positives = 34/82 (41%)
Query: 32 TSLTTLNLRYNKIEGSRTKQGICNLKNLLELDLSSNNFEGHLPQCLNNLTHLKVLDISYN 91
T L L N++ + L +L++L+L N G P +H++ L + N
Sbjct: 29 LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGEN 88
Query: 92 QLSGNFPSVLTNLTSLEYLDLS 113
++ + L L+ L+L
Sbjct: 89 KIKEISNKMFLGLHQLKTLNLY 110
|
| >1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7 Length = 192 | Back alignment and structure |
|---|
Score = 42.3 bits (100), Expect = 1e-04
Identities = 28/137 (20%), Positives = 46/137 (33%), Gaps = 34/137 (24%)
Query: 206 EVLILWNNSFSGILPRLPNAKYDKLRHLDISTNNFSGKLPENLGIVFQKLIYLDVSKNSF 265
L+L +N I + L L++ N + + N F+
Sbjct: 32 TELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLT-GIEPN---AFEGAS--------- 78
Query: 266 EGNIPYSISEMKELITLDLSRNNFSGELPRSIFSSCLSLETLDLSNNNFYGQL--FPN-- 321
+ L L N E+ +F L+TL+L +N Q+
Sbjct: 79 ------------HIQELQLGENKIK-EISNKMFLGLHQLKTLNLYDN----QISCVMPGS 121
Query: 322 FMNLTHLSSLRLNNNHF 338
F +L L+SL L +N F
Sbjct: 122 FEHLNSLTSLNLASNPF 138
|
| >1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7 Length = 192 | Back alignment and structure |
|---|
Score = 40.8 bits (96), Expect = 3e-04
Identities = 26/110 (23%), Positives = 41/110 (37%), Gaps = 16/110 (14%)
Query: 11 KILNLGFNFFIDSILP--YLNTLTSLTTLNLRYNKIEGSRTKQGIC-NLKNLLELDLSSN 67
L L N + I L L L L+ N++ + + ++ EL L N
Sbjct: 32 TELLLNDNE-LGRISSDGLFGRLPHLVKLELKRNQL--TGIEPNAFEGASHIQELQLGEN 88
Query: 68 NFEGHLPQCL-----NNLTHLKVLDISYNQLSGNFPSVLTNLTSLEYLDL 112
+ + L LK L++ NQ+S P +L SL L+L
Sbjct: 89 KI-----KEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNL 133
|
| >1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7 Length = 192 | Back alignment and structure |
|---|
Score = 40.8 bits (96), Expect = 3e-04
Identities = 27/112 (24%), Positives = 47/112 (41%), Gaps = 18/112 (16%)
Query: 330 SLRLNNNHFSGKMADGLLSS-TLLDVLDVSNNKLSGDIPHWI----GNFSVLWLLLMSEN 384
L LN+N +DGL L L++ N+L+ I + L L EN
Sbjct: 33 ELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLT-GIEPNAFEGASHIQELQL---GEN 88
Query: 385 YLQGSIPV----QLGNLESLEFIDISENGL-SVSMVSLSNLSSVKHIYLHNN 431
++ I L L++L ++ +N + V S +L+S+ + L +N
Sbjct: 89 KIK-EISNKMFLGLHQLKTL---NLYDNQISCVMPGSFEHLNSLTSLNLASN 136
|
| >1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7 Length = 192 | Back alignment and structure |
|---|
Score = 40.0 bits (94), Expect = 6e-04
Identities = 21/92 (22%), Positives = 33/92 (35%), Gaps = 11/92 (11%)
Query: 282 LDLSRNNFSGELPRSIFSSCLSLETLDLSNNNFYGQLFPN--FMNLTHLSSLRLNNNHFS 339
L L+ N +F L L+L N F +H+ L+L N
Sbjct: 34 LLLNDNELGRISSDGLFGRLPHLVKLELKRNQL--TGIEPNAFEGASHIQELQLGENKIK 91
Query: 340 ---GKMADGLLSSTLLDVLDVSNNKLSGDIPH 368
KM GL L L++ +N++S +
Sbjct: 92 EISNKMFLGL---HQLKTLNLYDNQISC-VMP 119
|
| >2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} Length = 193 | Back alignment and structure |
|---|
Score = 44.2 bits (105), Expect = 2e-05
Identities = 28/112 (25%), Positives = 46/112 (41%), Gaps = 22/112 (19%)
Query: 11 KILNLGFNFFIDSILPYLNTLTSLTTLNLRYNKIEGSRTKQGIC-NLKNLLELDLSSNNF 69
L L N + L+ LT ++L N+I S N+ LL L LS N
Sbjct: 34 TELYLDGNQ-FTLVPKELSNYKHLTLIDLSNNRI--STLSNQSFSNMTQLLTLILSYNRL 90
Query: 70 EGHLPQCL-----NNLTHLKVLDISYNQLS----GNFPSVLTNLTSLEYLDL 112
+C+ + L L++L + N +S G F +L++L +L +
Sbjct: 91 -----RCIPPRTFDGLKSLRLLSLHGNDISVVPEGAF----NDLSALSHLAI 133
|
| >2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} Length = 193 | Back alignment and structure |
|---|
Score = 44.2 bits (105), Expect = 2e-05
Identities = 26/82 (31%), Positives = 38/82 (46%), Gaps = 2/82 (2%)
Query: 32 TSLTTLNLRYNKIEGSRTKQGICNLKNLLELDLSSNNFEGHLPQCLNNLTHLKVLDISYN 91
+T L L N+ + + + N K+L +DLS+N Q +N+T L L +SYN
Sbjct: 31 RDVTELYLDGNQF--TLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYN 88
Query: 92 QLSGNFPSVLTNLTSLEYLDLS 113
+L P L SL L L
Sbjct: 89 RLRCIPPRTFDGLKSLRLLSLH 110
|
| >3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A Length = 272 | Back alignment and structure |
|---|
Score = 43.5 bits (103), Expect = 8e-05
Identities = 50/211 (23%), Positives = 84/211 (39%), Gaps = 31/211 (14%)
Query: 233 LDISTNNFSGKLPENLGIVFQKLIYLDVSKNSFEGNIPYSISEMKELITLDLSRNNFSGE 292
++ + + + I + S I + + L L N +
Sbjct: 24 ANLKKKSVT-DAVTQNELNSIDQIIANNSDIKSVQGIQ----YLPNVRYLALGGNKLH-D 77
Query: 293 LPRSIFSSCLSLETLDLSNNNFYGQLFPN--FMNLTHLSSLRLNNNHFSGKMADGLLSS- 349
+ +L L L+ N Q PN F LT+L L L N + DG+
Sbjct: 78 IS--ALKELTNLTYLILTGNQL--QSLPNGVFDKLTNLKELVLVENQLQ-SLPDGVFDKL 132
Query: 350 TLLDVLDVSNNKLSGDIPHWI----GNFSVLWLLLMSENYLQGSIPV----QLGNLESLE 401
T L L++++N+L +P + N + L L S N LQ S+P +L L+ L
Sbjct: 133 TNLTYLNLAHNQLQ-SLPKGVFDKLTNLTELDL---SYNQLQ-SLPEGVFDKLTQLKDL- 186
Query: 402 FIDISENGL-SVSMVSLSNLSSVKHIYLHNN 431
+ +N L SV L+S+++I+LH+N
Sbjct: 187 --RLYQNQLKSVPDGVFDRLTSLQYIWLHDN 215
|
| >3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A Length = 272 | Back alignment and structure |
|---|
Score = 41.2 bits (97), Expect = 4e-04
Identities = 28/103 (27%), Positives = 41/103 (39%), Gaps = 7/103 (6%)
Query: 11 KILNLGFNFFIDSILPYLNTLTSLTTLNLRYNKIEGSRTKQGICNLKNLLELDLSSNNFE 70
NL + N L S+ + + I+ + QGI L N+ L L N
Sbjct: 22 IKANLKKKSV--TDAVTQNELNSIDQIIANNSDIK---SVQGIQYLPNVRYLALGGNKLH 76
Query: 71 GHLPQCLNNLTHLKVLDISYNQLSGNFPSVLTNLTSLEYLDLS 113
+ L LT+L L ++ NQL V LT+L+ L L
Sbjct: 77 D-IS-ALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLV 117
|
| >2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri} Length = 208 | Back alignment and structure |
|---|
Score = 42.4 bits (100), Expect = 1e-04
Identities = 34/104 (32%), Positives = 46/104 (44%), Gaps = 3/104 (2%)
Query: 11 KILNLGFNFFIDSILPYLNTLTSLTTLNLRYNKIEGSRTKQGICN-LKNLLELDLSSNNF 69
L+L N + LTSLT L L NK+ G+ N L +L L+LS+N
Sbjct: 31 TYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKL--QSLPNGVFNKLTSLTYLNLSTNQL 88
Query: 70 EGHLPQCLNNLTHLKVLDISYNQLSGNFPSVLTNLTSLEYLDLS 113
+ + LT LK L ++ NQL V LT L+ L L
Sbjct: 89 QSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLY 132
|
| >2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri} Length = 208 | Back alignment and structure |
|---|
Score = 42.0 bits (99), Expect = 2e-04
Identities = 38/136 (27%), Positives = 58/136 (42%), Gaps = 17/136 (12%)
Query: 305 ETLDLSNNNFYGQLFPNFMNLTHLSSLRLNNNHFSGKMADGLLSSTLLDVLDVSNNKLSG 364
LDL N+ F LT L+ L L N T L L++S N+L
Sbjct: 31 TYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQ- 89
Query: 365 DIPHWI----GNFSVLWLLLMSENYLQGSIPV----QLGNLESLEFIDISENGL-SVSMV 415
+P+ + L L + N LQ S+P +L L+ L + +N L SV
Sbjct: 90 SLPNGVFDKLTQLKELAL---NTNQLQ-SLPDGVFDKLTQLKDL---RLYQNQLKSVPDG 142
Query: 416 SLSNLSSVKHIYLHNN 431
L+S+++I+LH+N
Sbjct: 143 VFDRLTSLQYIWLHDN 158
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 487 | |||
| 3rgz_A | 768 | Protein brassinosteroid insensitive 1; phytohormon | 100.0 | |
| 3rgz_A | 768 | Protein brassinosteroid insensitive 1; phytohormon | 100.0 | |
| 3t6q_A | 606 | CD180 antigen; protein-protein complex, leucine ri | 100.0 | |
| 3t6q_A | 606 | CD180 antigen; protein-protein complex, leucine ri | 100.0 | |
| 1ziw_A | 680 | TOLL-like receptor 3; innate immunity, immune syst | 100.0 | |
| 3vq2_A | 606 | TLR4, TOLL-like receptor 4; leucine rich repeat MD | 100.0 | |
| 1ziw_A | 680 | TOLL-like receptor 3; innate immunity, immune syst | 100.0 | |
| 3vq2_A | 606 | TLR4, TOLL-like receptor 4; leucine rich repeat MD | 100.0 | |
| 2z63_A | 570 | TOLL-like receptor 4, variable lymphocyte recepto; | 100.0 | |
| 3j0a_A | 844 | TOLL-like receptor 5; membrane protein, leucine-ri | 100.0 | |
| 2z81_A | 549 | CD282 antigen, TOLL-like receptor 2, variable lymp | 100.0 | |
| 3j0a_A | 844 | TOLL-like receptor 5; membrane protein, leucine-ri | 100.0 | |
| 2z63_A | 570 | TOLL-like receptor 4, variable lymphocyte recepto; | 100.0 | |
| 2z7x_B | 520 | TOLL-like receptor 1, variable lymphocyte recepto; | 100.0 | |
| 2z81_A | 549 | CD282 antigen, TOLL-like receptor 2, variable lymp | 100.0 | |
| 4eco_A | 636 | Uncharacterized protein; leucine-rich repeats, pro | 100.0 | |
| 2z7x_B | 520 | TOLL-like receptor 1, variable lymphocyte recepto; | 100.0 | |
| 4ecn_A | 876 | Leucine-rich repeat protein; leucine-rich repeats, | 100.0 | |
| 4g8a_A | 635 | TOLL-like receptor 4; leucine rich repeat MD-2 rel | 100.0 | |
| 4eco_A | 636 | Uncharacterized protein; leucine-rich repeats, pro | 100.0 | |
| 3a79_B | 562 | TLR6, VLRB.59, TOLL-like receptor 6, variable lymp | 100.0 | |
| 4ecn_A | 876 | Leucine-rich repeat protein; leucine-rich repeats, | 100.0 | |
| 3v47_A | 455 | TOLL-like receptor 5B and variable lymphocyte REC | 100.0 | |
| 3a79_B | 562 | TLR6, VLRB.59, TOLL-like receptor 6, variable lymp | 100.0 | |
| 4g8a_A | 635 | TOLL-like receptor 4; leucine rich repeat MD-2 rel | 100.0 | |
| 3v47_A | 455 | TOLL-like receptor 5B and variable lymphocyte REC | 100.0 | |
| 1jl5_A | 454 | Outer protein YOPM; leucine-rich repeat, molecular | 100.0 | |
| 1o6v_A | 466 | Internalin A; bacterial infection, extracellular r | 100.0 | |
| 1o6v_A | 466 | Internalin A; bacterial infection, extracellular r | 100.0 | |
| 1jl5_A | 454 | Outer protein YOPM; leucine-rich repeat, molecular | 100.0 | |
| 2id5_A | 477 | Lingo-1, leucine rich repeat neuronal 6A; CNS-spec | 100.0 | |
| 4fmz_A | 347 | Internalin; leucine rich repeat, structural genomi | 100.0 | |
| 3bz5_A | 457 | Internalin-J, INLJ; leucine rich repeat (LRR), cys | 100.0 | |
| 3bz5_A | 457 | Internalin-J, INLJ; leucine rich repeat (LRR), cys | 100.0 | |
| 4fmz_A | 347 | Internalin; leucine rich repeat, structural genomi | 99.98 | |
| 2id5_A | 477 | Lingo-1, leucine rich repeat neuronal 6A; CNS-spec | 99.98 | |
| 3o6n_A | 390 | APL1; leucine-rich repeat, protein binding; HET: N | 99.98 | |
| 3o6n_A | 390 | APL1; leucine-rich repeat, protein binding; HET: N | 99.97 | |
| 3oja_B | 597 | Anopheles plasmodium-responsive leucine-rich REPE | 99.97 | |
| 1z7x_W | 461 | Ribonuclease inhibitor; leucine-rich repeat, enzym | 99.97 | |
| 1z7x_W | 461 | Ribonuclease inhibitor; leucine-rich repeat, enzym | 99.96 | |
| 3oja_B | 597 | Anopheles plasmodium-responsive leucine-rich REPE | 99.96 | |
| 1ogq_A | 313 | PGIP-2, polygalacturonase inhibiting protein; inhi | 99.96 | |
| 1xku_A | 330 | Decorin; proteoglycan, leucine-rich repeat, struct | 99.96 | |
| 2ft3_A | 332 | Biglycan; proteoglycan, dimer interface, structura | 99.96 | |
| 1xku_A | 330 | Decorin; proteoglycan, leucine-rich repeat, struct | 99.96 | |
| 1ogq_A | 313 | PGIP-2, polygalacturonase inhibiting protein; inhi | 99.96 | |
| 2ft3_A | 332 | Biglycan; proteoglycan, dimer interface, structura | 99.95 | |
| 3ogk_B | 592 | Coronatine-insensitive protein 1; leucine rich rep | 99.95 | |
| 3ogk_B | 592 | Coronatine-insensitive protein 1; leucine rich rep | 99.95 | |
| 2z80_A | 353 | TOLL-like receptor 2, variable lymphocyte recepto; | 99.95 | |
| 2p1m_B | 594 | Transport inhibitor response 1 protein; F-BOX, leu | 99.95 | |
| 2z66_A | 306 | Variable lymphocyte receptor B, TOLL-like recepto; | 99.95 | |
| 3zyj_A | 440 | Leucine-rich repeat-containing protein 4C; cell ad | 99.94 | |
| 3zyi_A | 452 | Leucine-rich repeat-containing protein 4; cell adh | 99.94 | |
| 2p1m_B | 594 | Transport inhibitor response 1 protein; F-BOX, leu | 99.94 | |
| 1ozn_A | 285 | Reticulon 4 receptor; NOGO receptor, MAD, myelinat | 99.94 | |
| 2z66_A | 306 | Variable lymphocyte receptor B, TOLL-like recepto; | 99.94 | |
| 1ozn_A | 285 | Reticulon 4 receptor; NOGO receptor, MAD, myelinat | 99.94 | |
| 2z80_A | 353 | TOLL-like receptor 2, variable lymphocyte recepto; | 99.93 | |
| 4fcg_A | 328 | Uncharacterized protein; structural genomics, PSI- | 99.93 | |
| 4fcg_A | 328 | Uncharacterized protein; structural genomics, PSI- | 99.93 | |
| 3zyj_A | 440 | Leucine-rich repeat-containing protein 4C; cell ad | 99.92 | |
| 3zyi_A | 452 | Leucine-rich repeat-containing protein 4; cell adh | 99.92 | |
| 3o53_A | 317 | Protein LRIM1, AGAP006348-PA; leucine-rich repeat, | 99.92 | |
| 1wwl_A | 312 | Monocyte differentiation antigen CD14; LPS, immune | 99.92 | |
| 3g06_A | 622 | SSPH2 (leucine-rich repeat protein); E3 ubiquitin | 99.92 | |
| 3o53_A | 317 | Protein LRIM1, AGAP006348-PA; leucine-rich repeat, | 99.91 | |
| 2z62_A | 276 | TOLL-like receptor 4, variable lymphocyte recepto; | 99.91 | |
| 3oja_A | 487 | Leucine-rich immune molecule 1; coiled-coil, helix | 99.91 | |
| 2o6q_A | 270 | Variable lymphocyte receptor A; leucine-rich repea | 99.91 | |
| 2z62_A | 276 | TOLL-like receptor 4, variable lymphocyte recepto; | 99.91 | |
| 3g06_A | 622 | SSPH2 (leucine-rich repeat protein); E3 ubiquitin | 99.9 | |
| 3oja_A | 487 | Leucine-rich immune molecule 1; coiled-coil, helix | 99.9 | |
| 1wwl_A | 312 | Monocyte differentiation antigen CD14; LPS, immune | 99.89 | |
| 2o6q_A | 270 | Variable lymphocyte receptor A; leucine-rich repea | 99.89 | |
| 3rfs_A | 272 | Internalin B, repeat modules, variable lymphocyte | 99.89 | |
| 1p9a_G | 290 | Platelet glycoprotein IB alpha chain precursor; pl | 99.88 | |
| 2ca6_A | 386 | RAN GTPase-activating protein 1; GAP, GTPase activ | 99.87 | |
| 3rfs_A | 272 | Internalin B, repeat modules, variable lymphocyte | 99.87 | |
| 3goz_A | 362 | Leucine-rich repeat-containing protein; LEGL7, NES | 99.87 | |
| 1h6u_A | 308 | Internalin H; cell adhesion, leucine rich repeat, | 99.87 | |
| 2xwt_C | 239 | Thyrotropin receptor; signaling protein-immune sys | 99.86 | |
| 2ast_B | 336 | S-phase kinase-associated protein 2; SCF-substrate | 99.86 | |
| 1p9a_G | 290 | Platelet glycoprotein IB alpha chain precursor; pl | 99.86 | |
| 3m19_A | 251 | Variable lymphocyte receptor A diversity region; a | 99.85 | |
| 2ast_B | 336 | S-phase kinase-associated protein 2; SCF-substrate | 99.84 | |
| 4glp_A | 310 | Monocyte differentiation antigen CD14; alpha beta | 99.84 | |
| 1h6u_A | 308 | Internalin H; cell adhesion, leucine rich repeat, | 99.84 | |
| 4glp_A | 310 | Monocyte differentiation antigen CD14; alpha beta | 99.84 | |
| 3m19_A | 251 | Variable lymphocyte receptor A diversity region; a | 99.83 | |
| 2xwt_C | 239 | Thyrotropin receptor; signaling protein-immune sys | 99.83 | |
| 3goz_A | 362 | Leucine-rich repeat-containing protein; LEGL7, NES | 99.82 | |
| 2ca6_A | 386 | RAN GTPase-activating protein 1; GAP, GTPase activ | 99.82 | |
| 4ay9_X | 350 | Follicle-stimulating hormone receptor; hormone-rec | 99.79 | |
| 2o6s_A | 208 | Variable lymphocyte receptor B; leucine-rich repea | 99.78 | |
| 2o6s_A | 208 | Variable lymphocyte receptor B; leucine-rich repea | 99.77 | |
| 1h6t_A | 291 | Internalin B; cell adhesion, leucine rich repeat, | 99.76 | |
| 1h6t_A | 291 | Internalin B; cell adhesion, leucine rich repeat, | 99.76 | |
| 4ay9_X | 350 | Follicle-stimulating hormone receptor; hormone-rec | 99.76 | |
| 3cvr_A | 571 | Invasion plasmid antigen; leucine rich repeat and | 99.75 | |
| 1m9s_A | 605 | Internalin B; cell invasion, GW domains, SH3 domai | 99.74 | |
| 1m9s_A | 605 | Internalin B; cell invasion, GW domains, SH3 domai | 99.73 | |
| 2v9t_B | 220 | SLIT homolog 2 protein N-product; structural prote | 99.73 | |
| 2xot_A | 361 | Amphoterin-induced protein 1; cell adhesion, neuro | 99.72 | |
| 4fs7_A | 394 | Uncharacterized protein; leucine-rich repeats, pro | 99.72 | |
| 4fs7_A | 394 | Uncharacterized protein; leucine-rich repeats, pro | 99.72 | |
| 2v70_A | 220 | SLIT-2, SLIT homolog 2 protein N-product; neurogen | 99.72 | |
| 3cvr_A | 571 | Invasion plasmid antigen; leucine rich repeat and | 99.72 | |
| 2xot_A | 361 | Amphoterin-induced protein 1; cell adhesion, neuro | 99.71 | |
| 4ezg_A | 197 | Putative uncharacterized protein; internalin-A, le | 99.71 | |
| 3e6j_A | 229 | Variable lymphocyte receptor diversity region; var | 99.7 | |
| 3sb4_A | 329 | Hypothetical leucine rich repeat protein; LRR, rig | 99.7 | |
| 4ezg_A | 197 | Putative uncharacterized protein; internalin-A, le | 99.7 | |
| 2v9t_B | 220 | SLIT homolog 2 protein N-product; structural prote | 99.68 | |
| 1xeu_A | 263 | Internalin C; cellular invasion, leucine-rich repe | 99.68 | |
| 2v70_A | 220 | SLIT-2, SLIT homolog 2 protein N-product; neurogen | 99.68 | |
| 3e6j_A | 229 | Variable lymphocyte receptor diversity region; var | 99.68 | |
| 3sb4_A | 329 | Hypothetical leucine rich repeat protein; LRR, rig | 99.67 | |
| 1xeu_A | 263 | Internalin C; cellular invasion, leucine-rich repe | 99.67 | |
| 4fdw_A | 401 | Leucine rich hypothetical protein; putative cell s | 99.66 | |
| 2ell_A | 168 | Acidic leucine-rich nuclear phosphoprotein 32 FAM | 99.62 | |
| 4fdw_A | 401 | Leucine rich hypothetical protein; putative cell s | 99.61 | |
| 1dce_A | 567 | Protein (RAB geranylgeranyltransferase alpha subun | 99.61 | |
| 4gt6_A | 394 | Cell surface protein; leucine rich repeats, putati | 99.61 | |
| 1w8a_A | 192 | SLIT protein; signaling protein, secreted protein, | 99.58 | |
| 4gt6_A | 394 | Cell surface protein; leucine rich repeats, putati | 99.58 | |
| 2ell_A | 168 | Acidic leucine-rich nuclear phosphoprotein 32 FAM | 99.58 | |
| 2je0_A | 149 | Acidic leucine-rich nuclear phosphoprotein 32 FAM | 99.57 | |
| 2je0_A | 149 | Acidic leucine-rich nuclear phosphoprotein 32 FAM | 99.57 | |
| 1dce_A | 567 | Protein (RAB geranylgeranyltransferase alpha subun | 99.55 | |
| 2o6r_A | 177 | Variable lymphocyte receptor B; leucine-rich repea | 99.54 | |
| 2wfh_A | 193 | SLIT homolog 2 protein C-product; developmental pr | 99.52 | |
| 4b8c_D | 727 | Glucose-repressible alcohol dehydrogenase transcr | 99.51 | |
| 1w8a_A | 192 | SLIT protein; signaling protein, secreted protein, | 99.51 | |
| 1a9n_A | 176 | U2A', U2A'; complex (nuclear protein/RNA), RNA, sn | 99.5 | |
| 1ds9_A | 198 | Outer arm dynein; leucine-rich repeat, beta-BETA-a | 99.49 | |
| 1a9n_A | 176 | U2A', U2A'; complex (nuclear protein/RNA), RNA, sn | 99.46 | |
| 4b8c_D | 727 | Glucose-repressible alcohol dehydrogenase transcr | 99.46 | |
| 2wfh_A | 193 | SLIT homolog 2 protein C-product; developmental pr | 99.44 | |
| 2o6r_A | 177 | Variable lymphocyte receptor B; leucine-rich repea | 99.44 | |
| 4h09_A | 379 | Hypothetical leucine rich repeat protein; two LRR_ | 99.42 | |
| 3un9_A | 372 | NLR family member X1; leucine rich repeat (LRR), a | 99.37 | |
| 4h09_A | 379 | Hypothetical leucine rich repeat protein; two LRR_ | 99.37 | |
| 1ds9_A | 198 | Outer arm dynein; leucine-rich repeat, beta-BETA-a | 99.35 | |
| 3g39_A | 170 | Variable lymphocyte receptor VLRB.2D; antibody, X- | 99.35 | |
| 3un9_A | 372 | NLR family member X1; leucine rich repeat (LRR), a | 99.31 | |
| 2r9u_A | 174 | Variable lymphocyte receptor; adaptive immunity, V | 99.3 | |
| 3g39_A | 170 | Variable lymphocyte receptor VLRB.2D; antibody, X- | 99.18 | |
| 2r9u_A | 174 | Variable lymphocyte receptor; adaptive immunity, V | 99.15 | |
| 2ra8_A | 362 | Uncharacterized protein Q64V53_bacfr; WGR domain, | 99.04 | |
| 2ifg_A | 347 | High affinity nerve growth factor receptor; TRK, T | 98.97 | |
| 2ra8_A | 362 | Uncharacterized protein Q64V53_bacfr; WGR domain, | 98.89 | |
| 2ifg_A | 347 | High affinity nerve growth factor receptor; TRK, T | 98.85 | |
| 1io0_A | 185 | Tropomodulin; LRR protein, right-handed super-heli | 98.68 | |
| 1io0_A | 185 | Tropomodulin; LRR protein, right-handed super-heli | 98.54 | |
| 3e4g_A | 176 | ATP synthase subunit S, mitochondrial; leucine-ric | 98.47 | |
| 3e4g_A | 176 | ATP synthase subunit S, mitochondrial; leucine-ric | 98.35 | |
| 3rw6_A | 267 | Nuclear RNA export factor 1; retroviral constituti | 98.2 | |
| 3rw6_A | 267 | Nuclear RNA export factor 1; retroviral constituti | 98.13 | |
| 1pgv_A | 197 | TMD-1, tropomodulin TMD-1; structural genomics, PS | 97.59 | |
| 1pgv_A | 197 | TMD-1, tropomodulin TMD-1; structural genomics, PS | 97.36 | |
| 3rfe_A | 130 | Platelet glycoprotein IB beta chain; platelet surf | 96.93 | |
| 3rfe_A | 130 | Platelet glycoprotein IB beta chain; platelet surf | 96.36 | |
| 2lz0_A | 100 | Uncharacterized protein; hypothetical leucine rich | 86.22 | |
| 2lz0_A | 100 | Uncharacterized protein; hypothetical leucine rich | 83.34 |
| >3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.3e-53 Score=436.73 Aligned_cols=477 Identities=31% Similarity=0.406 Sum_probs=283.9
Q ss_pred cccccccccEEecCCccccccccccc-cCCCCCcEEEccCccccCCccccc---ccCCCCCcEEECCCCccCCCcchhcc
Q 036411 3 SFGSLKQLKILNLGFNFFIDSILPYL-NTLTSLTTLNLRYNKIEGSRTKQG---ICNLKNLLELDLSSNNFEGHLPQCLN 78 (487)
Q Consensus 3 ~~~~~~~L~~L~l~~~~~~~~~~~~~-~~~~~L~~L~l~~~~~~~~~~~~~---~~~~~~L~~L~l~~~~~~~~~~~~~~ 78 (487)
+|+++++|++|++++|.+.+..+..+ .++++|++|++++|.+.+... .. +.++++|++|++++|.+....+ +.
T Consensus 121 ~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~ 197 (768)
T 3rgz_A 121 SLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISGANV-VGWVLSDGCGELKHLAISGNKISGDVD--VS 197 (768)
T ss_dssp GGGGCTTCCEEECCSSEEECCSSCCSCCCCTTCSEEECCSSCCEEETH-HHHHHTTCCTTCCEEECCSSEEESCCB--CT
T ss_pred HHhCCCCCCEEECcCCccCCcCCHHHhccCCCCCEEECCCCccCCcCC-hhhhhhccCCCCCEEECCCCcccccCC--cc
Confidence 57778888888888877665555443 667777777777776653322 22 4555555555555555543322 24
Q ss_pred CCCCccEEeccCccccCCccccccCCCCCcEEeccccccCcchhHHHhhccccceEEEeccC------------------
Q 036411 79 NLTHLKVLDISYNQLSGNFPSVLTNLTSLEYLDLSFIDFQGTFLINSLANHSKLEVLVLSSG------------------ 140 (487)
Q Consensus 79 ~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~l~l~~~------------------ 140 (487)
.+++|++|++++|.++...|. +..+++|++|++++|.+.+. ....+..+++|++|+++.+
T Consensus 198 ~l~~L~~L~Ls~n~l~~~~~~-l~~l~~L~~L~Ls~n~l~~~-~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~l~~L~~L~ 275 (768)
T 3rgz_A 198 RCVNLEFLDVSSNNFSTGIPF-LGDCSALQHLDISGNKLSGD-FSRAISTCTELKLLNISSNQFVGPIPPLPLKSLQYLS 275 (768)
T ss_dssp TCTTCCEEECCSSCCCSCCCB-CTTCCSCCEEECCSSCCCSC-HHHHTTTCSSCCEEECCSSCCEESCCCCCCTTCCEEE
T ss_pred cCCcCCEEECcCCcCCCCCcc-cccCCCCCEEECcCCcCCCc-ccHHHhcCCCCCEEECCCCcccCccCccccCCCCEEE
Confidence 455555555555555443333 55555555555555554422 2234444555555544443
Q ss_pred ----CCccccccccccCCCCCceeecccccc-cccccccccCCcccEEeCCCCcccCCcchHhhhcCCCCcEEEcccCCC
Q 036411 141 ----NDMLQVKTENWLPTYPLKVLQLSHCHL-NVNSSFLLHQHHLKFLDLSHNQLVGNFPTWLLQNNTGLEVLILWNNSF 215 (487)
Q Consensus 141 ----~~~~~~~~~~~~~~~~L~~L~l~~~~~-~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 215 (487)
.....++......+++|++|++++|.+ ...+..+..+++|+.|++++|.+.+.++...+..+++|++|++++|.+
T Consensus 276 L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~ip~~~l~~l~~L~~L~Ls~n~l 355 (768)
T 3rgz_A 276 LAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEF 355 (768)
T ss_dssp CCSSEEEESCCCCSCTTCTTCSEEECCSSEEEECCCGGGGGCTTCCEEECCSSEEEEECCHHHHTTCTTCCEEECCSSEE
T ss_pred CcCCccCCccCHHHHhhcCcCCEEECcCCcCCCccchHHhcCCCccEEECCCCcccCcCCHHHHhcCCCCCEEeCcCCcc
Confidence 222222222222346777777777776 356666777778888888888776667766566777777777777765
Q ss_pred CCCCCCCCCcC---------------------------CCCCcEEEccCCcccccCCcccccccCceEEEEccCCCCCCC
Q 036411 216 SGILPRLPNAK---------------------------YDKLRHLDISTNNFSGKLPENLGIVFQKLIYLDVSKNSFEGN 268 (487)
Q Consensus 216 ~~~~~~~~~~~---------------------------~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~ 268 (487)
....+.. +.. +++|+.|++++|.+.+..+..+.. +++|++|++++|.+.+.
T Consensus 356 ~~~~p~~-l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~-l~~L~~L~Ls~N~l~~~ 433 (768)
T 3rgz_A 356 SGELPES-LTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSN-CSELVSLHLSFNYLSGT 433 (768)
T ss_dssp EECCCTT-HHHHTTTCSEEECCSSEEEEECCTTTTCSTTCCCCEEECCSSEEEEECCGGGGG-CTTCCEEECCSSEEESC
T ss_pred CccccHH-HHhhhcCCcEEEccCCCcCCCcChhhhhcccCCccEEECCCCccccccCHHHhc-CCCCCEEECcCCcccCc
Confidence 5332221 122 334444444444444333333322 34555566655555555
Q ss_pred cchhhhccccCcEEecccccCCCCCchhhhcCCCCCcEEECCCCccCCCCCcCCcCCCCccEEEcCCCcccccccccccC
Q 036411 269 IPYSISEMKELITLDLSRNNFSGELPRSIFSSCLSLETLDLSNNNFYGQLFPNFMNLTHLSSLRLNNNHFSGKMADGLLS 348 (487)
Q Consensus 269 ~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~ 348 (487)
.+..+..+++|+.|++++|.+.+.+|.. +..+++|++|++++|.+.+..+..+..+++|+.|++++|.+.+..+..+..
T Consensus 434 ~p~~l~~l~~L~~L~L~~n~l~~~~p~~-~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~ 512 (768)
T 3rgz_A 434 IPSSLGSLSKLRDLKLWLNMLEGEIPQE-LMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGR 512 (768)
T ss_dssp CCGGGGGCTTCCEEECCSSCCCSCCCGG-GGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGG
T ss_pred ccHHHhcCCCCCEEECCCCcccCcCCHH-HcCCCCceEEEecCCcccCcCCHHHhcCCCCCEEEccCCccCCcCChHHhc
Confidence 5555555566666666666655444443 345566666666666665555555666666666666666666555556666
Q ss_pred CCcccEEEccCCccCCCchhhhcccccccEEecCCccccCcchhhh----------------------------------
Q 036411 349 STLLDVLDVSNNKLSGDIPHWIGNFSVLWLLLMSENYLQGSIPVQL---------------------------------- 394 (487)
Q Consensus 349 ~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~---------------------------------- 394 (487)
+++|+.|++++|++.+.+|..++.+++|+.|++++|.+.+..|..+
T Consensus 513 l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 592 (768)
T 3rgz_A 513 LENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGN 592 (768)
T ss_dssp CTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEEESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEE
T ss_pred CCCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCCccCCcCChHHhcccchhhhhcccccccccccccccccccccccc
Confidence 6666666666666665666666666666666666665554333221
Q ss_pred ------------------------------------ccCcCCcEEeccCCccc-cccccccCCCcceEEEeeCcccCCcc
Q 036411 395 ------------------------------------GNLESLEFIDISENGLS-VSMVSLSNLSSVKHIYLHNNAINGLI 437 (487)
Q Consensus 395 ------------------------------------~~~~~L~~l~l~~~~~~-~~~~~~~~~~~L~~L~l~~~~~~~~~ 437 (487)
..+++|+.|++++|+++ ..+..+..+++|+.|++++|.+++.+
T Consensus 593 ~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~i 672 (768)
T 3rgz_A 593 LLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSI 672 (768)
T ss_dssp EEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCSCC
T ss_pred ccccccccchhhhccccccccccccceecccCchhhhccccccEEECcCCcccccCCHHHhccccCCEEeCcCCccCCCC
Confidence 22345666666666664 34455667777777777777777777
Q ss_pred hHhhhccCcceEEeCCCCcccccCcccccccCceeEEeccCCccCCCCCC
Q 036411 438 PIALLRSSTLLTLDLRDNKFFGRIPHQINELSNLHFLLLRGNSLQGRIPN 487 (487)
Q Consensus 438 ~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~p~ 487 (487)
|..+..+++|+.|+|++|++++.+|..++++++|++|++++|+++|.||+
T Consensus 673 p~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ls~N~l~g~iP~ 722 (768)
T 3rgz_A 673 PDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPE 722 (768)
T ss_dssp CGGGGGCTTCCEEECCSSCCEECCCGGGGGCCCCSEEECCSSEEEEECCS
T ss_pred ChHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECcCCcccccCCC
Confidence 77777777777777777777777777777777777777777777777774
|
| >3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-51 Score=424.31 Aligned_cols=479 Identities=32% Similarity=0.454 Sum_probs=370.0
Q ss_pred ccccccccccEEecCCccccccccc--cccCCCCCcEEEccCccccCCcccccccCCCCCcEEECCCCccCCCcchh---
Q 036411 2 DSFGSLKQLKILNLGFNFFIDSILP--YLNTLTSLTTLNLRYNKIEGSRTKQGICNLKNLLELDLSSNNFEGHLPQC--- 76 (487)
Q Consensus 2 ~~~~~~~~L~~L~l~~~~~~~~~~~--~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~--- 76 (487)
++|+++++|++|++++|.+.+.++. .++.+++|++|++++|.+.+..+...+.++++|++|++++|.+....+..
T Consensus 94 ~~~~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~ 173 (768)
T 3rgz_A 94 SGFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISGANVVGWVL 173 (768)
T ss_dssp CCCCCCTTCCEEECCSSEEEEEGGGGGGGGGCTTCCEEECCSSEEECCSSCCSCCCCTTCSEEECCSSCCEEETHHHHHH
T ss_pred hhhccCCCCCEEECCCCcCCCcCCChHHHhCCCCCCEEECcCCccCCcCCHHHhccCCCCCEEECCCCccCCcCChhhhh
Confidence 4688999999999999998887777 89999999999999999876555544589999999999999998666666
Q ss_pred ccCCCCccEEeccCccccCCccccccCCCCCcEEeccccccCcchhHHHhhccccceEEEeccCCCccccccccccCCCC
Q 036411 77 LNNLTHLKVLDISYNQLSGNFPSVLTNLTSLEYLDLSFIDFQGTFLINSLANHSKLEVLVLSSGNDMLQVKTENWLPTYP 156 (487)
Q Consensus 77 ~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~ 156 (487)
+.++++|++|++++|.++...+ +..+++|++|++++|.+.+.... ++.+++|++|+++++... ......+..+++
T Consensus 174 ~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~Ls~n~l~~~~~~--l~~l~~L~~L~Ls~n~l~-~~~~~~l~~l~~ 248 (768)
T 3rgz_A 174 SDGCGELKHLAISGNKISGDVD--VSRCVNLEFLDVSSNNFSTGIPF--LGDCSALQHLDISGNKLS-GDFSRAISTCTE 248 (768)
T ss_dssp TTCCTTCCEEECCSSEEESCCB--CTTCTTCCEEECCSSCCCSCCCB--CTTCCSCCEEECCSSCCC-SCHHHHTTTCSS
T ss_pred hccCCCCCEEECCCCcccccCC--cccCCcCCEEECcCCcCCCCCcc--cccCCCCCEEECcCCcCC-CcccHHHhcCCC
Confidence 7899999999999999886544 37899999999999998765443 899999999999876533 233334555666
Q ss_pred Cceeeccccccc-----------------------cccccccc-CCcccEEeCCCCcccCCcchHhhhcCCCCcEEEccc
Q 036411 157 LKVLQLSHCHLN-----------------------VNSSFLLH-QHHLKFLDLSHNQLVGNFPTWLLQNNTGLEVLILWN 212 (487)
Q Consensus 157 L~~L~l~~~~~~-----------------------~~~~~~~~-~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~ 212 (487)
|++|++++|.+. ..+..+.. +++|+.|++++|.+.+..+.. +..+++|++|++++
T Consensus 249 L~~L~Ls~n~l~~~~~~~~l~~L~~L~L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~l~~~~p~~-~~~l~~L~~L~L~~ 327 (768)
T 3rgz_A 249 LKLLNISSNQFVGPIPPLPLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPF-FGSCSLLESLALSS 327 (768)
T ss_dssp CCEEECCSSCCEESCCCCCCTTCCEEECCSSEEEESCCCCSCTTCTTCSEEECCSSEEEECCCGG-GGGCTTCCEEECCS
T ss_pred CCEEECCCCcccCccCccccCCCCEEECcCCccCCccCHHHHhhcCcCCEEECcCCcCCCccchH-HhcCCCccEEECCC
Confidence 666666666552 33333333 256666666666655444433 33566677777766
Q ss_pred CCCCCCCCCCCCcCCCCCcEEEccCCcccccCCcccccc--------------------------cCceEEEEccCCCCC
Q 036411 213 NSFSGILPRLPNAKYDKLRHLDISTNNFSGKLPENLGIV--------------------------FQKLIYLDVSKNSFE 266 (487)
Q Consensus 213 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~--------------------------~~~L~~L~l~~~~~~ 266 (487)
|.+....+...+..+++|+.|++++|.+.+.++..+... +++|++|++++|.++
T Consensus 328 n~l~~~ip~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~n~l~ 407 (768)
T 3rgz_A 328 NNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFT 407 (768)
T ss_dssp SEEEEECCHHHHTTCTTCCEEECCSSEEEECCCTTHHHHTTTCSEEECCSSEEEEECCTTTTCSTTCCCCEEECCSSEEE
T ss_pred CcccCcCCHHHHhcCCCCCEEeCcCCccCccccHHHHhhhcCCcEEEccCCCcCCCcChhhhhcccCCccEEECCCCccc
Confidence 665433332224566778888888777765555554432 234555555555554
Q ss_pred CCcchhhhccccCcEEecccccCCCCCchhhhcCCCCCcEEECCCCccCCCCCcCCcCCCCccEEEcCCCcccccccccc
Q 036411 267 GNIPYSISEMKELITLDLSRNNFSGELPRSIFSSCLSLETLDLSNNNFYGQLFPNFMNLTHLSSLRLNNNHFSGKMADGL 346 (487)
Q Consensus 267 ~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~ 346 (487)
+..+..+..+++|+.|++++|.+.+.+|.. |..+++|+.|++++|.+.+..+..+..+++|++|++++|.+.+..+..+
T Consensus 408 ~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~-l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l 486 (768)
T 3rgz_A 408 GKIPPTLSNCSELVSLHLSFNYLSGTIPSS-LGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGL 486 (768)
T ss_dssp EECCGGGGGCTTCCEEECCSSEEESCCCGG-GGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGG
T ss_pred cccCHHHhcCCCCCEEECcCCcccCcccHH-HhcCCCCCEEECCCCcccCcCCHHHcCCCCceEEEecCCcccCcCCHHH
Confidence 455566777788888888888877555544 5778888888888888887778888888889999999998887888888
Q ss_pred cCCCcccEEEccCCccCCCchhhhcccccccEEecCCccccCcchhhhccCcCCcEEeccCCcccc-ccc----------
Q 036411 347 LSSTLLDVLDVSNNKLSGDIPHWIGNFSVLWLLLMSENYLQGSIPVQLGNLESLEFIDISENGLSV-SMV---------- 415 (487)
Q Consensus 347 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~-~~~---------- 415 (487)
..+++|+.|++++|++++.+|..++.+++|++|++++|.+.+..|..+..+++|+.|++++|++.. .+.
T Consensus 487 ~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~ 566 (768)
T 3rgz_A 487 SNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIA 566 (768)
T ss_dssp GGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEEESBCCGGGGTTTTCBC
T ss_pred hcCCCCCEEEccCCccCCcCChHHhcCCCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCCccCCcCChHHhcccchhh
Confidence 888999999999999988889999999999999999999888888889999999999999987641 111
Q ss_pred ------------------------------------------------------------cccCCCcceEEEeeCcccCC
Q 036411 416 ------------------------------------------------------------SLSNLSSVKHIYLHNNAING 435 (487)
Q Consensus 416 ------------------------------------------------------------~~~~~~~L~~L~l~~~~~~~ 435 (487)
.+..+++|+.|++++|++++
T Consensus 567 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~g 646 (768)
T 3rgz_A 567 ANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSG 646 (768)
T ss_dssp CSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEECCSSCCBS
T ss_pred hhccccccccccccccccccccccccccccccccchhhhccccccccccccceecccCchhhhccccccEEECcCCcccc
Confidence 22345789999999999999
Q ss_pred cchHhhhccCcceEEeCCCCcccccCcccccccCceeEEeccCCccCCCCCC
Q 036411 436 LIPIALLRSSTLLTLDLRDNKFFGRIPHQINELSNLHFLLLRGNSLQGRIPN 487 (487)
Q Consensus 436 ~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~p~ 487 (487)
.+|..+..+++|+.|+|++|.+++.+|..++++++|+.|++++|+++|.+|+
T Consensus 647 ~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~ 698 (768)
T 3rgz_A 647 YIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQ 698 (768)
T ss_dssp CCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCCG
T ss_pred cCCHHHhccccCCEEeCcCCccCCCCChHHhCCCCCCEEECCCCcccCcCCh
Confidence 9999999999999999999999999999999999999999999999999984
|
| >3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1e-48 Score=393.95 Aligned_cols=468 Identities=21% Similarity=0.172 Sum_probs=308.4
Q ss_pred cccEEecCCccccccccccccCCCCCcEEEccCccccCCcccccccCCCCCcEEECCCCccCCCcchhccCCCCccEEec
Q 036411 9 QLKILNLGFNFFIDSILPYLNTLTSLTTLNLRYNKIEGSRTKQGICNLKNLLELDLSSNNFEGHLPQCLNNLTHLKVLDI 88 (487)
Q Consensus 9 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l 88 (487)
++++|++++|.+.+..+.+|+.+++|++|++++|.+.+ ..+.+|.++++|++|++++|.+....|..++++++|++|++
T Consensus 34 ~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~-~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L 112 (606)
T 3t6q_A 34 STECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYW-IHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLFF 112 (606)
T ss_dssp TCCEEECTTCCCSEECTTTSTTCTTCSEEECTTCCCCE-ECTTTTTTCTTCCEEECTTCCCSEECTTTTSSCTTCCEEEC
T ss_pred cCcEEEccCCccCcCChhHhccCccceEEECCCCccce-eChhhccCccccCeeeCCCCcccccChhhhcccccccEeec
Confidence 45666666666655555566666666666666666542 33445666666666666666665555556666666666666
Q ss_pred cCccccCCccccccCCCCCcEEeccccccCcchhHHHhhccccceEEEeccCCCccccccccccCCCCCc--eeeccccc
Q 036411 89 SYNQLSGNFPSVLTNLTSLEYLDLSFIDFQGTFLINSLANHSKLEVLVLSSGNDMLQVKTENWLPTYPLK--VLQLSHCH 166 (487)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~L~--~L~l~~~~ 166 (487)
++|.++...+..+..+++|++|++++|.+.+...... ..+++|++++++++ .+.......+..+++|+ .+++++|.
T Consensus 113 ~~n~i~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~-~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~l~L~l~~n~ 190 (606)
T 3t6q_A 113 IQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKG-FPTEKLKVLDFQNN-AIHYLSKEDMSSLQQATNLSLNLNGND 190 (606)
T ss_dssp TTSCCSCGGGSCCTTCTTCCEEECCSSCCCCCCCCTT-CCCTTCCEEECCSS-CCCEECHHHHHTTTTCCSEEEECTTCC
T ss_pred cccCcccCCcchhccCCcccEEECCCCcccccCcccc-cCCcccCEEEcccC-cccccChhhhhhhcccceeEEecCCCc
Confidence 6666654445556666666666666665543222222 22566666666443 22333333344445555 55555555
Q ss_pred ccccccccccCC----------------------------------------------------cccEEeCCCCcccCCc
Q 036411 167 LNVNSSFLLHQH----------------------------------------------------HLKFLDLSHNQLVGNF 194 (487)
Q Consensus 167 ~~~~~~~~~~~~----------------------------------------------------~L~~L~l~~~~~~~~~ 194 (487)
+...+....... +++.++++++.+. .+
T Consensus 191 l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~l~~l~~~~~~~~~~~~i~~~~~~~l~~~~L~~L~l~~n~l~-~~ 269 (606)
T 3t6q_A 191 IAGIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFF-NI 269 (606)
T ss_dssp CCEECTTTTTTCEEEEEECTTCSCHHHHHHHTTTCEEEEEECCCCTTSCCCCCCGGGGGGGGGSEEEEEECTTCCCS-SC
T ss_pred cCccChhHhhhccccccccCCchhHHHHhhhccccchhheechhhccccccccChhHhchhhcCceeEEEeecCccC-cc
Confidence 432222211122 5667777777665 44
Q ss_pred chHhhhcCCCCcEEEcccCCCCCCCCCCCCcCCCCCcEEEccCCcccccCCcccccccCceEEEEccCCCCCCCc-chhh
Q 036411 195 PTWLLQNNTGLEVLILWNNSFSGILPRLPNAKYDKLRHLDISTNNFSGKLPENLGIVFQKLIYLDVSKNSFEGNI-PYSI 273 (487)
Q Consensus 195 ~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~-~~~~ 273 (487)
+...+..+++|++|++++|.+..... .+..+++|+.|++++|.+.+..+..+ ..+++|++|++++|.+.+.. ...+
T Consensus 270 ~~~~~~~l~~L~~L~l~~n~l~~lp~--~l~~l~~L~~L~l~~n~l~~~~~~~~-~~l~~L~~L~l~~n~~~~~~~~~~~ 346 (606)
T 3t6q_A 270 SSNTFHCFSGLQELDLTATHLSELPS--GLVGLSTLKKLVLSANKFENLCQISA-SNFPSLTHLSIKGNTKRLELGTGCL 346 (606)
T ss_dssp CTTTTTTCTTCSEEECTTSCCSCCCS--SCCSCTTCCEEECTTCCCSBGGGGCG-GGCTTCSEEECCSCSSCCBCCSSTT
T ss_pred CHHHhccccCCCEEeccCCccCCCCh--hhcccccCCEEECccCCcCcCchhhh-hccCcCCEEECCCCCcccccchhhh
Confidence 55555677788888888777764333 23667778888888877764333333 34577888888887766433 3346
Q ss_pred hccccCcEEecccccCCCCCc--hhhhcCCCCCcEEECCCCccCCCCCcCCcCCCCccEEEcCCCcccccccc-cccCCC
Q 036411 274 SEMKELITLDLSRNNFSGELP--RSIFSSCLSLETLDLSNNNFYGQLFPNFMNLTHLSSLRLNNNHFSGKMAD-GLLSST 350 (487)
Q Consensus 274 ~~~~~L~~L~l~~~~~~~~~~--~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~-~~~~~~ 350 (487)
..+++|+.|++++|.+. ..+ ...+..+++|++|++++|.+.+..+..+..+++|++|++++|.+.+..+. .+..++
T Consensus 347 ~~l~~L~~L~l~~n~l~-~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~ 425 (606)
T 3t6q_A 347 ENLENLRELDLSHDDIE-TSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLH 425 (606)
T ss_dssp TTCTTCCEEECCSSCCC-EEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEECCTTCCTTTTCT
T ss_pred hccCcCCEEECCCCccc-cccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCCCcccchhhhCcc
Confidence 77788888888888776 443 33457778888888888877666667777788888888888877654433 367778
Q ss_pred cccEEEccCCccCCCchhhhcccccccEEecCCccccCc---chhhhccCcCCcEEeccCCccccc-cccccCCCcceEE
Q 036411 351 LLDVLDVSNNKLSGDIPHWIGNFSVLWLLLMSENYLQGS---IPVQLGNLESLEFIDISENGLSVS-MVSLSNLSSVKHI 426 (487)
Q Consensus 351 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~---~~~~~~~~~~L~~l~l~~~~~~~~-~~~~~~~~~L~~L 426 (487)
+|+.|++++|.+.+..+..+..+++|++|++++|.+.+. .+..+..+++|+.|++++|+++.. +..+..+++|++|
T Consensus 426 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L 505 (606)
T 3t6q_A 426 LLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHV 505 (606)
T ss_dssp TCCEEECTTCCCBTTCTTTTTTCTTCCEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTSCCCEECTTTTTTCTTCCEE
T ss_pred cCCEEECCCCccCCcCHHHHhCCCCCCEEECCCCCCCccccccchhhccCCCccEEECCCCccCccChhhhccccCCCEE
Confidence 888888888888777777788888888888888877642 224577788888888888887644 4566678888888
Q ss_pred EeeCcccCCcchHhhhccCcceEEeCCCCcccccCcccccccCceeEEeccCCccCCCC
Q 036411 427 YLHNNAINGLIPIALLRSSTLLTLDLRDNKFFGRIPHQINELSNLHFLLLRGNSLQGRI 485 (487)
Q Consensus 427 ~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~ 485 (487)
++++|++++..+.++..+++| .|++++|++++..|..+..+++|+.|++++||+.+..
T Consensus 506 ~Ls~N~l~~~~~~~l~~l~~L-~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c 563 (606)
T 3t6q_A 506 DLSHNRLTSSSIEALSHLKGI-YLNLASNHISIILPSLLPILSQQRTINLRQNPLDCTC 563 (606)
T ss_dssp ECCSSCCCGGGGGGGTTCCSC-EEECCSSCCCCCCGGGHHHHHTSSEEECTTCCEECSG
T ss_pred ECCCCccCcCChhHhCccccc-EEECcCCcccccCHhhcccCCCCCEEeCCCCCccccC
Confidence 888888888778888888888 8888888888777778888888888888888877654
|
| >3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-47 Score=385.66 Aligned_cols=451 Identities=21% Similarity=0.193 Sum_probs=376.7
Q ss_pred ccccccccccEEecCCccccccccccccCCCCCcEEEccCccccCCcccccccCCCCCcEEECCCCccCCCcchhccCCC
Q 036411 2 DSFGSLKQLKILNLGFNFFIDSILPYLNTLTSLTTLNLRYNKIEGSRTKQGICNLKNLLELDLSSNNFEGHLPQCLNNLT 81 (487)
Q Consensus 2 ~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~ 81 (487)
++|.++++|++|++++|.+.+..+.+|+.+++|++|++++|.+.+ ..+..|.++++|++|++++|.+....+..+.+++
T Consensus 51 ~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~-~~~~~~~~l~~L~~L~L~~n~i~~l~~~~~~~l~ 129 (606)
T 3t6q_A 51 TTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIF-MAETALSGPKALKHLFFIQTGISSIDFIPLHNQK 129 (606)
T ss_dssp TTSTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCSE-ECTTTTSSCTTCCEEECTTSCCSCGGGSCCTTCT
T ss_pred hHhccCccceEEECCCCccceeChhhccCccccCeeeCCCCcccc-cChhhhcccccccEeeccccCcccCCcchhccCC
Confidence 478999999999999999888888999999999999999999873 3456799999999999999999876678899999
Q ss_pred CccEEeccCccccCCccccccCCCCCcEEeccccccCcchhHHHhhccccce--EEEeccCCCcccccccccc-------
Q 036411 82 HLKVLDISYNQLSGNFPSVLTNLTSLEYLDLSFIDFQGTFLINSLANHSKLE--VLVLSSGNDMLQVKTENWL------- 152 (487)
Q Consensus 82 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~--~l~l~~~~~~~~~~~~~~~------- 152 (487)
+|++|++++|.++......+..+++|++|++++|.+.+ .....++.+++|+ .++++++... ......+.
T Consensus 130 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~-~~~~~~~~l~~L~~l~L~l~~n~l~-~~~~~~~~~~~L~~L 207 (606)
T 3t6q_A 130 TLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHY-LSKEDMSSLQQATNLSLNLNGNDIA-GIEPGAFDSAVFQSL 207 (606)
T ss_dssp TCCEEECCSSCCCCCCCCTTCCCTTCCEEECCSSCCCE-ECHHHHHTTTTCCSEEEECTTCCCC-EECTTTTTTCEEEEE
T ss_pred cccEEECCCCcccccCcccccCCcccCEEEcccCcccc-cChhhhhhhcccceeEEecCCCccC-ccChhHhhhcccccc
Confidence 99999999999886443445569999999999998873 3456788888888 7777654322 22211111
Q ss_pred ------------------------------------------CC--CCCceeecccccccccc-cccccCCcccEEeCCC
Q 036411 153 ------------------------------------------PT--YPLKVLQLSHCHLNVNS-SFLLHQHHLKFLDLSH 187 (487)
Q Consensus 153 ------------------------------------------~~--~~L~~L~l~~~~~~~~~-~~~~~~~~L~~L~l~~ 187 (487)
.. .+++.+++.++.+...+ ..+..+++|+.|++++
T Consensus 208 ~l~~~~~~~~~~~~l~~~~l~~l~~~~~~~~~~~~i~~~~~~~l~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~ 287 (606)
T 3t6q_A 208 NFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFNISSNTFHCFSGLQELDLTA 287 (606)
T ss_dssp ECTTCSCHHHHHHHTTTCEEEEEECCCCTTSCCCCCCGGGGGGGGGSEEEEEECTTCCCSSCCTTTTTTCTTCSEEECTT
T ss_pred ccCCchhHHHHhhhccccchhheechhhccccccccChhHhchhhcCceeEEEeecCccCccCHHHhccccCCCEEeccC
Confidence 11 15778888888885444 4588899999999999
Q ss_pred CcccCCcchHhhhcCCCCcEEEcccCCCCCCCCCCCCcCCCCCcEEEccCCcccccCCcccccccCceEEEEccCCCCCC
Q 036411 188 NQLVGNFPTWLLQNNTGLEVLILWNNSFSGILPRLPNAKYDKLRHLDISTNNFSGKLPENLGIVFQKLIYLDVSKNSFEG 267 (487)
Q Consensus 188 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~ 267 (487)
|.+. .++..+ ..+++|++|++++|.+....+. .+..+++|+.|++++|.+...++......+++|++|++++|.+.+
T Consensus 288 n~l~-~lp~~l-~~l~~L~~L~l~~n~l~~~~~~-~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~ 364 (606)
T 3t6q_A 288 THLS-ELPSGL-VGLSTLKKLVLSANKFENLCQI-SASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIET 364 (606)
T ss_dssp SCCS-CCCSSC-CSCTTCCEEECTTCCCSBGGGG-CGGGCTTCSEEECCSCSSCCBCCSSTTTTCTTCCEEECCSSCCCE
T ss_pred CccC-CCChhh-cccccCCEEECccCCcCcCchh-hhhccCcCCEEECCCCCcccccchhhhhccCcCCEEECCCCcccc
Confidence 9987 666654 5789999999999998765443 457889999999999988766766655667999999999999875
Q ss_pred Cc--chhhhccccCcEEecccccCCCCCchhhhcCCCCCcEEECCCCccCCCCCc-CCcCCCCccEEEcCCCcccccccc
Q 036411 268 NI--PYSISEMKELITLDLSRNNFSGELPRSIFSSCLSLETLDLSNNNFYGQLFP-NFMNLTHLSSLRLNNNHFSGKMAD 344 (487)
Q Consensus 268 ~~--~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~-~~~~~~~L~~L~l~~~~~~~~~~~ 344 (487)
.. +..+..+++|+.|++++|.+. .++...|..+++|+.|++++|.+.+..+. .+..+++|+.|++++|.+.+..+.
T Consensus 365 ~~~~~~~~~~l~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~ 443 (606)
T 3t6q_A 365 SDCCNLQLRNLSHLQSLNLSYNEPL-SLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQ 443 (606)
T ss_dssp EEESTTTTTTCTTCCEEECCSCSCE-EECTTTTTTCTTCSEEECTTCCEECCTTCCTTTTCTTCCEEECTTCCCBTTCTT
T ss_pred ccCcchhcccCCCCCEEECCCCcCC-cCCHHHhcCCccCCeEECCCCcCCCcccchhhhCcccCCEEECCCCccCCcCHH
Confidence 54 567889999999999999987 56666678999999999999998766544 478899999999999999888888
Q ss_pred cccCCCcccEEEccCCccCCC---chhhhcccccccEEecCCccccCcchhhhccCcCCcEEeccCCcccc-ccccccCC
Q 036411 345 GLLSSTLLDVLDVSNNKLSGD---IPHWIGNFSVLWLLLMSENYLQGSIPVQLGNLESLEFIDISENGLSV-SMVSLSNL 420 (487)
Q Consensus 345 ~~~~~~~L~~L~l~~~~~~~~---~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~-~~~~~~~~ 420 (487)
.+..+++|++|++++|++.+. .+..+..+++|++|++++|.+.+..+..+..+++|+.|++++|+++. .+..+..+
T Consensus 444 ~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l 523 (606)
T 3t6q_A 444 LFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHL 523 (606)
T ss_dssp TTTTCTTCCEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCGGGGGGGTTC
T ss_pred HHhCCCCCCEEECCCCCCCccccccchhhccCCCccEEECCCCccCccChhhhccccCCCEEECCCCccCcCChhHhCcc
Confidence 899999999999999998752 23578999999999999999998778899999999999999999864 45677789
Q ss_pred CcceEEEeeCcccCCcchHhhhccCcceEEeCCCCccccc
Q 036411 421 SSVKHIYLHNNAINGLIPIALLRSSTLLTLDLRDNKFFGR 460 (487)
Q Consensus 421 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~ 460 (487)
+.| +|++++|.+++..+..+..+++|+.|++++|++.+.
T Consensus 524 ~~L-~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~ 562 (606)
T 3t6q_A 524 KGI-YLNLASNHISIILPSLLPILSQQRTINLRQNPLDCT 562 (606)
T ss_dssp CSC-EEECCSSCCCCCCGGGHHHHHTSSEEECTTCCEECS
T ss_pred ccc-EEECcCCcccccCHhhcccCCCCCEEeCCCCCcccc
Confidence 999 999999999999999999999999999999999653
|
| >1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.7e-47 Score=387.65 Aligned_cols=475 Identities=24% Similarity=0.232 Sum_probs=250.1
Q ss_pred cccccccccEEecCCccccccccccccCCCCCcEEEccCccccCCcccccccCCCCCcEEECCCCccCCCcchhccCCCC
Q 036411 3 SFGSLKQLKILNLGFNFFIDSILPYLNTLTSLTTLNLRYNKIEGSRTKQGICNLKNLLELDLSSNNFEGHLPQCLNNLTH 82 (487)
Q Consensus 3 ~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~ 82 (487)
+|.++++|++|++++|.+.+..+.+++.+++|++|++++|.+.+ .++..|.++++|++|++++|.+....+..++++++
T Consensus 44 ~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~-l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~ 122 (680)
T 1ziw_A 44 NFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQ-LSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKN 122 (680)
T ss_dssp GGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSCCCC-CCTTTTTTCTTCSEEECCSSCCCCCCSCTTTTCTT
T ss_pred HHhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECCCCccCc-cChhhhccCCCCCEEECCCCccCccChhHccccCC
Confidence 57888899999999888888778888889999999999888863 34456888999999999999888666678888999
Q ss_pred ccEEeccCccccCCccccccCCCCCcEEeccccccCcchhHHHh--hccccceEEEeccCCCccccccccccC-------
Q 036411 83 LKVLDISYNQLSGNFPSVLTNLTSLEYLDLSFIDFQGTFLINSL--ANHSKLEVLVLSSGNDMLQVKTENWLP------- 153 (487)
Q Consensus 83 L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~--~~~~~L~~l~l~~~~~~~~~~~~~~~~------- 153 (487)
|++|++++|.++...+..+..+++|++|++++|.+.+... ..+ ..+++|+.++++++. +.......+..
T Consensus 123 L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~-~~~~~~~~~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L 200 (680)
T 1ziw_A 123 LITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKS-EELDIFANSSLKKLELSSNQ-IKEFSPGCFHAIGRLFGL 200 (680)
T ss_dssp CCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSCCCCBCH-HHHGGGTTCEESEEECTTCC-CCCBCTTGGGGSSEECEE
T ss_pred CCEEECCCCcccccCchhhcccccCCEEEccCCcccccCH-HHhhccccccccEEECCCCc-ccccChhhhhhhhhhhhh
Confidence 9999999998887777788888999999999888765433 233 345788888887653 22222221111
Q ss_pred --------------------CCCCceeeccccccc-ccccccccCC--cccEEeCCCCcccCCcchHhhhcCCCCcEEEc
Q 036411 154 --------------------TYPLKVLQLSHCHLN-VNSSFLLHQH--HLKFLDLSHNQLVGNFPTWLLQNNTGLEVLIL 210 (487)
Q Consensus 154 --------------------~~~L~~L~l~~~~~~-~~~~~~~~~~--~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l 210 (487)
.++|+.|+++++.+. ..+..+..++ +|+.|++++|.+. ..+...+..+++|++|++
T Consensus 201 ~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~l~~~~L~~L~Ls~n~l~-~~~~~~~~~l~~L~~L~L 279 (680)
T 1ziw_A 201 FLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLN-VVGNDSFAWLPQLEYFFL 279 (680)
T ss_dssp ECTTCCCHHHHHHHHHHHHTTSCCCEEECTTSCCCEECTTTTGGGGGSCCCEEECTTSCCC-EECTTTTTTCTTCCEEEC
T ss_pred hccccccChhhHHHHHHHhhhccccEEEccCCcccccChhHhhccCcCCCCEEECCCCCcC-ccCcccccCcccccEeeC
Confidence 133444444444442 2222333332 2555555555544 222222334555555555
Q ss_pred ccCCCCCCCCC--------------------------------CCCcCCCCCcEEEccCCcccccCCcccccccCceEEE
Q 036411 211 WNNSFSGILPR--------------------------------LPNAKYDKLRHLDISTNNFSGKLPENLGIVFQKLIYL 258 (487)
Q Consensus 211 ~~~~~~~~~~~--------------------------------~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L 258 (487)
++|.+....+. ..+..+++|+.|++++|.+.+..+. .+..+++|++|
T Consensus 280 ~~n~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~lp~i~~~~~~~l~~L~~L~l~~n~l~~~~~~-~~~~l~~L~~L 358 (680)
T 1ziw_A 280 EYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSN-MFTGLINLKYL 358 (680)
T ss_dssp CSCCBSEECTTTTTTCTTCCEEECTTCBCCC------CCEECTTTTTTCTTCCEEECCSCCBCCCCTT-TTTTCTTCCEE
T ss_pred CCCccCccChhhhcCCCCccEEeccchhhhcccccccccccChhhcccCCCCCEEECCCCccCCCChh-HhccccCCcEE
Confidence 55544332221 1234455566666666655532222 22223445555
Q ss_pred EccCCCCCCC--cchhhhc--cccCcEEecccccCCCCCchhhhcCCCCCcEEECCCCccCCCC-CcCCcCCCCccEEEc
Q 036411 259 DVSKNSFEGN--IPYSISE--MKELITLDLSRNNFSGELPRSIFSSCLSLETLDLSNNNFYGQL-FPNFMNLTHLSSLRL 333 (487)
Q Consensus 259 ~l~~~~~~~~--~~~~~~~--~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~-~~~~~~~~~L~~L~l 333 (487)
++++|.+... ....+.. .++|+.|++++|.+. .++...|..+++|+.|++++|.+.+.. ...+..+++|+.|++
T Consensus 359 ~Ls~n~~~~~~l~~~~f~~~~~~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L 437 (680)
T 1ziw_A 359 SLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKIS-KIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYL 437 (680)
T ss_dssp ECTTCBSCCCEECTTTTGGGTTSCCCEEECTTSCCC-EECTTTTTTCTTCCEEECCSSCCEEECCSGGGTTCTTCCEEEC
T ss_pred ECCCCchhhhhcchhhhcccccCcCceEECCCCCCC-eEChhhhhCCCCCCEEeCCCCcCccccCcccccCcccccEEec
Confidence 5544432110 0000110 123333333333333 222233444445555555555443222 133444444555555
Q ss_pred CCCcccccccccccCCCcccEEEccCCccC--CCchhhhcccccccEEecCCccccCcchhhhccCcCCcEEeccCCccc
Q 036411 334 NNNHFSGKMADGLLSSTLLDVLDVSNNKLS--GDIPHWIGNFSVLWLLLMSENYLQGSIPVQLGNLESLEFIDISENGLS 411 (487)
Q Consensus 334 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~--~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~ 411 (487)
++|.+.+..+..+..+++|+.|++++|.+. +..|..+..+++|+.|++++|.+++..+..+..+++|+.|++++|+++
T Consensus 438 s~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~p~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~ 517 (680)
T 1ziw_A 438 SYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLA 517 (680)
T ss_dssp CSCSEEECCTTTTTTCTTCCEEECTTSCCBCTTCSSCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCG
T ss_pred CCCCcceeChhhhhcCcccccchhccccccccccCCcccccCCCCCEEECCCCCCCcCChhhhccccccCEEeCCCCCcc
Confidence 444444333334444444444444444332 233444444555555555555544433444444455555555555443
Q ss_pred ccc---------ccccCCCcceEEEeeCcccCCcchHhhhccCcceEEeCCCCcccccCcccccccCceeEEeccCCccC
Q 036411 412 VSM---------VSLSNLSSVKHIYLHNNAINGLIPIALLRSSTLLTLDLRDNKFFGRIPHQINELSNLHFLLLRGNSLQ 482 (487)
Q Consensus 412 ~~~---------~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~ 482 (487)
... ..+..+++|++|++++|.++...+.+|..+++|+.|++++|.++...+..+..+++|+.|++++|+++
T Consensus 518 ~~~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L~~N~l~ 597 (680)
T 1ziw_A 518 RLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLIT 597 (680)
T ss_dssp GGGSTTSTTSCCCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCCC
T ss_pred ccchhhccCCcchhhcCCCCCCEEECCCCCCCCCCHHHcccccCcceeECCCCCCCcCCHhHhCCCCCCCEEECCCCcCC
Confidence 211 11334444444444444444433334444444444444444444333334444444444444444444
Q ss_pred C
Q 036411 483 G 483 (487)
Q Consensus 483 ~ 483 (487)
+
T Consensus 598 ~ 598 (680)
T 1ziw_A 598 S 598 (680)
T ss_dssp B
T ss_pred c
Confidence 3
|
| >3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-47 Score=386.20 Aligned_cols=463 Identities=21% Similarity=0.160 Sum_probs=361.7
Q ss_pred ccccEEecCCccccccccccccCCCCCcEEEccCccccCCcccccccCCCCCcEEECCCCccCCCcchhccCCCCccEEe
Q 036411 8 KQLKILNLGFNFFIDSILPYLNTLTSLTTLNLRYNKIEGSRTKQGICNLKNLLELDLSSNNFEGHLPQCLNNLTHLKVLD 87 (487)
Q Consensus 8 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~ 87 (487)
+++++|++++|.+.+..+..|+.+++|++|++++|.+.+ ..+.+|.++++|++|++++|.+....|..++++++|++|+
T Consensus 32 ~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~-i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~ 110 (606)
T 3vq2_A 32 SSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIET-IEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLV 110 (606)
T ss_dssp TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCE-ECTTTTTTCTTCCEEECTTCCCCCCCTTSSTTCTTCCEEE
T ss_pred CCcCEEECCCCCcCEeChhhccCCccCcEEeCCCCcccc-cCHHHhhchhhcCEeECCCCcccccChhhcCCcccCCEEE
Confidence 568888888888777777678888888888888887763 3455678888888888888888766677788888888888
Q ss_pred ccCccccCCccccccCCCCCcEEeccccccCcchhHHHhhccccceEEEeccCCCccccccccccCCCC----Cceeecc
Q 036411 88 ISYNQLSGNFPSVLTNLTSLEYLDLSFIDFQGTFLINSLANHSKLEVLVLSSGNDMLQVKTENWLPTYP----LKVLQLS 163 (487)
Q Consensus 88 l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~----L~~L~l~ 163 (487)
+++|.++...+..+.++++|++|++++|.+.+...+..++.+++|++|+++++. +.......+..+.+ +..++++
T Consensus 111 L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~~l~~L~l~ 189 (606)
T 3vq2_A 111 AVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNY-IQTITVNDLQFLRENPQVNLSLDMS 189 (606)
T ss_dssp CTTSCCCCSSSSCCTTCTTCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSSC-CCEECTTTTHHHHHCTTCCCEEECT
T ss_pred ccCCccccccccccCCCCCCCEEeCCCCcccceechHhHhhcCCCCEEEccCCc-ceecChhhhhhhhccccccceeecc
Confidence 888887766656788888888888888877654455677888888888887653 33343333433333 3367777
Q ss_pred cccccccccccccCCcccEEeCCCCccc----------------------------------------------------
Q 036411 164 HCHLNVNSSFLLHQHHLKFLDLSHNQLV---------------------------------------------------- 191 (487)
Q Consensus 164 ~~~~~~~~~~~~~~~~L~~L~l~~~~~~---------------------------------------------------- 191 (487)
++.++..+.......+|+.+++++|.+.
T Consensus 190 ~n~l~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~ 269 (606)
T 3vq2_A 190 LNPIDFIQDQAFQGIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLT 269 (606)
T ss_dssp TCCCCEECTTTTTTCEEEEEEEESCCSCHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCGGGGTTGGGSEEEEEEEC
T ss_pred CCCcceeCcccccCceeeeeeccCCccchhHHHHHhccccccccccccccccccCCcccccChHHhhhhhhccHhheecc
Confidence 7776555544444446777777666442
Q ss_pred ------CCcchHhhhcCCCCcEEEcccCCCCCCCCCCCCcCCCCCcEEEccCCcccccCCcccccccCceEEEEccCCCC
Q 036411 192 ------GNFPTWLLQNNTGLEVLILWNNSFSGILPRLPNAKYDKLRHLDISTNNFSGKLPENLGIVFQKLIYLDVSKNSF 265 (487)
Q Consensus 192 ------~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 265 (487)
+..+. +..+++|+.+++.++.+.... .+..+++|+.|++++|.+. .++.. .+++|++|++++|..
T Consensus 270 ~~~~~~~~~~~--~~~l~~L~~L~l~~~~~~~l~---~l~~~~~L~~L~l~~n~l~-~lp~~---~l~~L~~L~l~~n~~ 340 (606)
T 3vq2_A 270 YTNDFSDDIVK--FHCLANVSAMSLAGVSIKYLE---DVPKHFKWQSLSIIRCQLK-QFPTL---DLPFLKSLTLTMNKG 340 (606)
T ss_dssp CCTTCCGGGGS--CGGGTTCSEEEEESCCCCCCC---CCCTTCCCSEEEEESCCCS-SCCCC---CCSSCCEEEEESCSS
T ss_pred ccccccccccc--cccCCCCCEEEecCccchhhh---hccccccCCEEEcccccCc-ccccC---CCCccceeeccCCcC
Confidence 11111 345678888888888776543 3467788999999999884 66643 568999999999965
Q ss_pred CCCcchhhhccccCcEEecccccCCCCCc--hhhhcCCCCCcEEECCCCccCCCCCcCCcCCCCccEEEcCCCccccccc
Q 036411 266 EGNIPYSISEMKELITLDLSRNNFSGELP--RSIFSSCLSLETLDLSNNNFYGQLFPNFMNLTHLSSLRLNNNHFSGKMA 343 (487)
Q Consensus 266 ~~~~~~~~~~~~~L~~L~l~~~~~~~~~~--~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~ 343 (487)
.+. ..+..+++|+.|++++|.+. ..+ ...+..+++|++|++++|.+.+ .+..+..+++|+.|++++|.+.+..+
T Consensus 341 ~~~--~~~~~l~~L~~L~ls~n~l~-~~~~~~~~~~~~~~L~~L~L~~n~l~~-~~~~~~~l~~L~~L~l~~n~l~~~~~ 416 (606)
T 3vq2_A 341 SIS--FKKVALPSLSYLDLSRNALS-FSGCCSYSDLGTNSLRHLDLSFNGAII-MSANFMGLEELQHLDFQHSTLKRVTE 416 (606)
T ss_dssp CEE--CCCCCCTTCCEEECCSSCEE-EEEECCHHHHCCSCCCEEECCSCSEEE-ECCCCTTCTTCCEEECTTSEEESTTT
T ss_pred ccc--hhhccCCCCCEEECcCCccC-CCcchhhhhccCCcccEeECCCCcccc-chhhccCCCCCCeeECCCCccCCccC
Confidence 432 25678899999999999987 442 3446889999999999999865 34778899999999999999987666
Q ss_pred -ccccCCCcccEEEccCCccCCCchhhhcccccccEEecCCccccC-cchhhhccCcCCcEEeccCCccccc-cccccCC
Q 036411 344 -DGLLSSTLLDVLDVSNNKLSGDIPHWIGNFSVLWLLLMSENYLQG-SIPVQLGNLESLEFIDISENGLSVS-MVSLSNL 420 (487)
Q Consensus 344 -~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~-~~~~~~~~~~~L~~l~l~~~~~~~~-~~~~~~~ 420 (487)
..+..+++|+.|++++|.+.+..+..+..+++|++|++++|.+.+ ..+..+..+++|+.|++++|+++.. +..+..+
T Consensus 417 ~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l 496 (606)
T 3vq2_A 417 FSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTL 496 (606)
T ss_dssp TTTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTC
T ss_pred hhhhhccccCCEEECcCCCCCccchhhhcCCCCCCEEECCCCcCCCcchHHhhccCCCCCEEECCCCcCCccChhhhccc
Confidence 678889999999999999988889999999999999999999886 3678889999999999999998654 4557789
Q ss_pred CcceEEEeeCcccCCcchHhhhccCcceEEeCCCCcccccCcccccccC-ceeEEeccCCccCCCCC
Q 036411 421 SSVKHIYLHNNAINGLIPIALLRSSTLLTLDLRDNKFFGRIPHQINELS-NLHFLLLRGNSLQGRIP 486 (487)
Q Consensus 421 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~-~L~~L~l~~~~~~~~~p 486 (487)
++|++|++++|++++..+..+..+++|+.|++++|+++ .+|..+..++ +|+.|++++||+.+..|
T Consensus 497 ~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~-~~p~~~~~l~~~L~~l~l~~N~~~c~c~ 562 (606)
T 3vq2_A 497 HRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIE-TSKGILQHFPKSLAFFNLTNNSVACICE 562 (606)
T ss_dssp TTCCEEECCSSCCSCEEGGGTTTCTTCCEEECTTSCCC-CEESCGGGSCTTCCEEECCSCCCCCSST
T ss_pred ccCCEEECCCCcCCCcCHHHccCCCcCCEEECCCCcCc-ccCHhHhhhcccCcEEEccCCCcccCCc
Confidence 99999999999999988999999999999999999997 6777789997 69999999999987654
|
| >1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.3e-46 Score=380.59 Aligned_cols=479 Identities=23% Similarity=0.201 Sum_probs=362.3
Q ss_pred cccccccccEEecCCccccccccccccCCCCCcEEEccCccccCCcccccccCCCCCcEEECCCCccCCCcchhccCCCC
Q 036411 3 SFGSLKQLKILNLGFNFFIDSILPYLNTLTSLTTLNLRYNKIEGSRTKQGICNLKNLLELDLSSNNFEGHLPQCLNNLTH 82 (487)
Q Consensus 3 ~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~ 82 (487)
+|+++++|++|++++|.+....+.+|+.+++|++|++++|.+.+ ..+..|.++++|++|++++|.+....+..+.++++
T Consensus 68 ~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~-~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~ 146 (680)
T 1ziw_A 68 LCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQK-IKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLEN 146 (680)
T ss_dssp HHHHCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCC-CCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTT
T ss_pred HHhcccCcCEEECCCCccCccChhhhccCCCCCEEECCCCccCc-cChhHccccCCCCEEECCCCcccccCchhhccccc
Confidence 56788899999999888777666678889999999999988863 34466888899999999998888777777888888
Q ss_pred ccEEeccCccccCCcccccc--CCCCCcEEeccccccCcchhHHHhhcc---------------------------cc--
Q 036411 83 LKVLDISYNQLSGNFPSVLT--NLTSLEYLDLSFIDFQGTFLINSLANH---------------------------SK-- 131 (487)
Q Consensus 83 L~~L~l~~~~~~~~~~~~~~--~~~~L~~L~l~~~~~~~~~~~~~~~~~---------------------------~~-- 131 (487)
|++|++++|.++...+..+. .+++|++|++++|.+.+.. ...+..+ ++
T Consensus 147 L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~-~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~ 225 (680)
T 1ziw_A 147 LQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKEFS-PGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIR 225 (680)
T ss_dssp CCEEECCSSCCCCBCHHHHGGGTTCEESEEECTTCCCCCBC-TTGGGGSSEECEEECTTCCCHHHHHHHHHHHHTTSCCC
T ss_pred CCEEEccCCcccccCHHHhhccccccccEEECCCCcccccC-hhhhhhhhhhhhhhccccccChhhHHHHHHHhhhcccc
Confidence 88888888887765555443 4577888888877665322 1222222 23
Q ss_pred ------------------------ceEEEeccCCCccccccccccCCCCCceeeccccccc-ccccccccCCcccEEeCC
Q 036411 132 ------------------------LEVLVLSSGNDMLQVKTENWLPTYPLKVLQLSHCHLN-VNSSFLLHQHHLKFLDLS 186 (487)
Q Consensus 132 ------------------------L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~-~~~~~~~~~~~L~~L~l~ 186 (487)
|+.|+++.+. +..+....+..+++|+.|++++|.+. ..+..+..+++|+.++++
T Consensus 226 ~L~L~~n~l~~~~~~~~~~l~~~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 304 (680)
T 1ziw_A 226 NLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNN-LNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLK 304 (680)
T ss_dssp EEECTTSCCCEECTTTTGGGGGSCCCEEECTTSC-CCEECTTTTTTCTTCCEEECCSCCBSEECTTTTTTCTTCCEEECT
T ss_pred EEEccCCcccccChhHhhccCcCCCCEEECCCCC-cCccCcccccCcccccEeeCCCCccCccChhhhcCCCCccEEecc
Confidence 4444443321 22222333444444555555554442 223344445555555554
Q ss_pred CCcccC--------CcchHhhhcCCCCcEEEcccCCCCCCCCCCCCcCCCCCcEEEccCCcccc-cCCccccc--ccCce
Q 036411 187 HNQLVG--------NFPTWLLQNNTGLEVLILWNNSFSGILPRLPNAKYDKLRHLDISTNNFSG-KLPENLGI--VFQKL 255 (487)
Q Consensus 187 ~~~~~~--------~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~-~~~~~~~~--~~~~L 255 (487)
++...+ .+....+..+++|++|++++|.+....+. .+..+++|+.|++++|.+.. .++...+. ..++|
T Consensus 305 ~~~~~~~~~~~~lp~i~~~~~~~l~~L~~L~l~~n~l~~~~~~-~~~~l~~L~~L~Ls~n~~~~~~l~~~~f~~~~~~~L 383 (680)
T 1ziw_A 305 RSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSN-MFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPL 383 (680)
T ss_dssp TCBCCC------CCEECTTTTTTCTTCCEEECCSCCBCCCCTT-TTTTCTTCCEEECTTCBSCCCEECTTTTGGGTTSCC
T ss_pred chhhhcccccccccccChhhcccCCCCCEEECCCCccCCCChh-HhccccCCcEEECCCCchhhhhcchhhhcccccCcC
Confidence 432211 11112345678889999988888765544 45788999999999986432 22222211 12589
Q ss_pred EEEEccCCCCCCCcchhhhccccCcEEecccccCCCCCchhhhcCCCCCcEEECCCCccCCCCCcCCcCCCCccEEEcCC
Q 036411 256 IYLDVSKNSFEGNIPYSISEMKELITLDLSRNNFSGELPRSIFSSCLSLETLDLSNNNFYGQLFPNFMNLTHLSSLRLNN 335 (487)
Q Consensus 256 ~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~ 335 (487)
+.|++++|.+.+..+..+..+++|+.|++++|.+.+.++...|.++++|++|++++|.+.+..+..+..+++|+.|++.+
T Consensus 384 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~ 463 (680)
T 1ziw_A 384 HILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRR 463 (680)
T ss_dssp CEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCEEECCSGGGTTCTTCCEEECCSCSEEECCTTTTTTCTTCCEEECTT
T ss_pred ceEECCCCCCCeEChhhhhCCCCCCEEeCCCCcCccccCcccccCcccccEEecCCCCcceeChhhhhcCcccccchhcc
Confidence 99999999998777888999999999999999998678877789999999999999998877788899999999999999
Q ss_pred Cccc--ccccccccCCCcccEEEccCCccCCCchhhhcccccccEEecCCccccCcch--------hhhccCcCCcEEec
Q 036411 336 NHFS--GKMADGLLSSTLLDVLDVSNNKLSGDIPHWIGNFSVLWLLLMSENYLQGSIP--------VQLGNLESLEFIDI 405 (487)
Q Consensus 336 ~~~~--~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~--------~~~~~~~~L~~l~l 405 (487)
|.+. +..+..+..+++|+.|++++|++++..+..+..+++|++|++++|.++.... ..+..+++|+.|++
T Consensus 464 n~l~~~~~~p~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~L 543 (680)
T 1ziw_A 464 VALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNL 543 (680)
T ss_dssp SCCBCTTCSSCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCGGGGSTTSTTSCCCTTTTCTTCCEEEC
T ss_pred ccccccccCCcccccCCCCCEEECCCCCCCcCChhhhccccccCEEeCCCCCccccchhhccCCcchhhcCCCCCCEEEC
Confidence 9876 4567788899999999999999998888889999999999999999875322 23678899999999
Q ss_pred cCCccccccc-cccCCCcceEEEeeCcccCCcchHhhhccCcceEEeCCCCcccccCccccc-ccCceeEEeccCCccCC
Q 036411 406 SENGLSVSMV-SLSNLSSVKHIYLHNNAINGLIPIALLRSSTLLTLDLRDNKFFGRIPHQIN-ELSNLHFLLLRGNSLQG 483 (487)
Q Consensus 406 ~~~~~~~~~~-~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~-~l~~L~~L~l~~~~~~~ 483 (487)
++|++...+. .+..+++|+.|++++|+++...+..+..+++|+.|++++|+++...+..+. .+++|+.|++++||+.+
T Consensus 544 ~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~l~l~~N~~~c 623 (680)
T 1ziw_A 544 ESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTELDMRFNPFDC 623 (680)
T ss_dssp CSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCCCBCCHHHHHHHHTTCSEEECTTCCCCB
T ss_pred CCCCCCCCCHHHcccccCcceeECCCCCCCcCCHhHhCCCCCCCEEECCCCcCCccChhHhcccccccCEEEccCCCccc
Confidence 9999976554 477999999999999999998888899999999999999999888888887 89999999999999877
Q ss_pred CC
Q 036411 484 RI 485 (487)
Q Consensus 484 ~~ 485 (487)
.-
T Consensus 624 ~c 625 (680)
T 1ziw_A 624 TC 625 (680)
T ss_dssp CC
T ss_pred CC
Confidence 54
|
| >3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=5.3e-47 Score=381.48 Aligned_cols=441 Identities=20% Similarity=0.186 Sum_probs=362.1
Q ss_pred ccccccccccEEecCCccccccccccccCCCCCcEEEccCccccCCcccccccCCCCCcEEECCCCccCCCcchhccCCC
Q 036411 2 DSFGSLKQLKILNLGFNFFIDSILPYLNTLTSLTTLNLRYNKIEGSRTKQGICNLKNLLELDLSSNNFEGHLPQCLNNLT 81 (487)
Q Consensus 2 ~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~ 81 (487)
++|.++++|++|++++|.+.+..+.+|+.+++|++|++++|.+.+ ..+..|.++++|++|++++|.+....+..+++++
T Consensus 50 ~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n~l~~-~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~ 128 (606)
T 3vq2_A 50 YSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQS-FSPGSFSGLTSLENLVAVETKLASLESFPIGQLI 128 (606)
T ss_dssp TTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCC-CCTTSSTTCTTCCEEECTTSCCCCSSSSCCTTCT
T ss_pred hhccCCccCcEEeCCCCcccccCHHHhhchhhcCEeECCCCcccc-cChhhcCCcccCCEEEccCCccccccccccCCCC
Confidence 368899999999999999888888899999999999999999874 3467799999999999999999877668899999
Q ss_pred CccEEeccCccccC-CccccccCCCCCcEEeccccccCcchhHHHhhccccc----eEEEeccCCCccccccccccCCCC
Q 036411 82 HLKVLDISYNQLSG-NFPSVLTNLTSLEYLDLSFIDFQGTFLINSLANHSKL----EVLVLSSGNDMLQVKTENWLPTYP 156 (487)
Q Consensus 82 ~L~~L~l~~~~~~~-~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L----~~l~l~~~~~~~~~~~~~~~~~~~ 156 (487)
+|++|++++|.++. .+|..+.++++|++|++++|.+.+. ....++.+++| .+++++.+. +..++...+... +
T Consensus 129 ~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~l~~~-~~~~~~~l~~L~~~l~~L~l~~n~-l~~~~~~~~~~~-~ 205 (606)
T 3vq2_A 129 TLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTI-TVNDLQFLRENPQVNLSLDMSLNP-IDFIQDQAFQGI-K 205 (606)
T ss_dssp TCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSSCCCEE-CTTTTHHHHHCTTCCCEEECTTCC-CCEECTTTTTTC-E
T ss_pred CCCEEeCCCCcccceechHhHhhcCCCCEEEccCCcceec-ChhhhhhhhccccccceeeccCCC-cceeCcccccCc-e
Confidence 99999999999875 4688999999999999999988753 23344444444 367776543 344444444333 6
Q ss_pred Cceeeccccccc----------------------------------------------------------ccccccccCC
Q 036411 157 LKVLQLSHCHLN----------------------------------------------------------VNSSFLLHQH 178 (487)
Q Consensus 157 L~~L~l~~~~~~----------------------------------------------------------~~~~~~~~~~ 178 (487)
|+.++++++.+. .....+..++
T Consensus 206 L~~L~L~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~~~~l~ 285 (606)
T 3vq2_A 206 LHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVKFHCLA 285 (606)
T ss_dssp EEEEEEESCCSCHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCGGGGTTGGGSEEEEEEECCCTTCCGGGGSCGGGT
T ss_pred eeeeeccCCccchhHHHHHhccccccccccccccccccCCcccccChHHhhhhhhccHhheeccccccccccccccccCC
Confidence 777776665431 1111255678
Q ss_pred cccEEeCCCCcccCCcchHhhhcCCCCcEEEcccCCCCCCCCCCCCcCCCCCcEEEccCCcccccCCcccccccCceEEE
Q 036411 179 HLKFLDLSHNQLVGNFPTWLLQNNTGLEVLILWNNSFSGILPRLPNAKYDKLRHLDISTNNFSGKLPENLGIVFQKLIYL 258 (487)
Q Consensus 179 ~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L 258 (487)
+|+.++++++.+. .++ .+..+++|++|++.+|.+... +. . .+++|+.|++++|...... ....+++|++|
T Consensus 286 ~L~~L~l~~~~~~-~l~--~l~~~~~L~~L~l~~n~l~~l-p~--~-~l~~L~~L~l~~n~~~~~~---~~~~l~~L~~L 355 (606)
T 3vq2_A 286 NVSAMSLAGVSIK-YLE--DVPKHFKWQSLSIIRCQLKQF-PT--L-DLPFLKSLTLTMNKGSISF---KKVALPSLSYL 355 (606)
T ss_dssp TCSEEEEESCCCC-CCC--CCCTTCCCSEEEEESCCCSSC-CC--C-CCSSCCEEEEESCSSCEEC---CCCCCTTCCEE
T ss_pred CCCEEEecCccch-hhh--hccccccCCEEEcccccCccc-cc--C-CCCccceeeccCCcCccch---hhccCCCCCEE
Confidence 9999999999886 555 355789999999999998433 33 2 8899999999999554333 22246899999
Q ss_pred EccCCCCCCC--cchhhhccccCcEEecccccCCCCCchhhhcCCCCCcEEECCCCccCCCCC-cCCcCCCCccEEEcCC
Q 036411 259 DVSKNSFEGN--IPYSISEMKELITLDLSRNNFSGELPRSIFSSCLSLETLDLSNNNFYGQLF-PNFMNLTHLSSLRLNN 335 (487)
Q Consensus 259 ~l~~~~~~~~--~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~-~~~~~~~~L~~L~l~~ 335 (487)
++++|.+.+. .+..+..+++|+.|++++|.+. .++ ..|..+++|+.|++++|.+.+..+ ..+..+++|+.|++++
T Consensus 356 ~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~-~~~-~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~ 433 (606)
T 3vq2_A 356 DLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAI-IMS-ANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISY 433 (606)
T ss_dssp ECCSSCEEEEEECCHHHHCCSCCCEEECCSCSEE-EEC-CCCTTCTTCCEEECTTSEEESTTTTTTTTTCTTCCEEECTT
T ss_pred ECcCCccCCCcchhhhhccCCcccEeECCCCccc-cch-hhccCCCCCCeeECCCCccCCccChhhhhccccCCEEECcC
Confidence 9999998754 2678889999999999999987 666 446889999999999999887666 5788999999999999
Q ss_pred CcccccccccccCCCcccEEEccCCccCC-CchhhhcccccccEEecCCccccCcchhhhccCcCCcEEeccCCccccc-
Q 036411 336 NHFSGKMADGLLSSTLLDVLDVSNNKLSG-DIPHWIGNFSVLWLLLMSENYLQGSIPVQLGNLESLEFIDISENGLSVS- 413 (487)
Q Consensus 336 ~~~~~~~~~~~~~~~~L~~L~l~~~~~~~-~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~- 413 (487)
|.+.+..+..+..+++|++|++++|++.+ ..|..++.+++|++|++++|.+.+..+..+..+++|+.|++++|++...
T Consensus 434 n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~ 513 (606)
T 3vq2_A 434 TNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLD 513 (606)
T ss_dssp SCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCEE
T ss_pred CCCCccchhhhcCCCCCCEEECCCCcCCCcchHHhhccCCCCCEEECCCCcCCccChhhhcccccCCEEECCCCcCCCcC
Confidence 99998888889999999999999999986 4788899999999999999999988888899999999999999999755
Q ss_pred cccccCCCcceEEEeeCcccCCcchHhhhccC-cceEEeCCCCcccc
Q 036411 414 MVSLSNLSSVKHIYLHNNAINGLIPIALLRSS-TLLTLDLRDNKFFG 459 (487)
Q Consensus 414 ~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~-~L~~L~l~~~~~~~ 459 (487)
+..+..+++|++|++++|+++.. |..+..++ +|+.|++++|++.+
T Consensus 514 ~~~~~~l~~L~~L~l~~N~l~~~-p~~~~~l~~~L~~l~l~~N~~~c 559 (606)
T 3vq2_A 514 SSHYNQLYSLSTLDCSFNRIETS-KGILQHFPKSLAFFNLTNNSVAC 559 (606)
T ss_dssp GGGTTTCTTCCEEECTTSCCCCE-ESCGGGSCTTCCEEECCSCCCCC
T ss_pred HHHccCCCcCCEEECCCCcCccc-CHhHhhhcccCcEEEccCCCccc
Confidence 66777999999999999999965 44577776 69999999999864
|
| >2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.8e-45 Score=368.06 Aligned_cols=467 Identities=19% Similarity=0.153 Sum_probs=375.2
Q ss_pred ccccEEecCCccccccccccccCCCCCcEEEccCccccCCcccccccCCCCCcEEECCCCccCCCcchhccCCCCccEEe
Q 036411 8 KQLKILNLGFNFFIDSILPYLNTLTSLTTLNLRYNKIEGSRTKQGICNLKNLLELDLSSNNFEGHLPQCLNNLTHLKVLD 87 (487)
Q Consensus 8 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~ 87 (487)
++++.|++++|.+.+..+.+|+.+++|++|++++|.+.+ ..+.+|.++++|++|++++|.+....+..+.++++|++|+
T Consensus 28 ~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~-i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 106 (570)
T 2z63_A 28 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQT-IEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLV 106 (570)
T ss_dssp SSCCEEECCSCCCCEECTTTTTTCSSCCEEECTTCCCCE-ECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEE
T ss_pred ccccEEEccCCccCccChhHhhCCCCceEEECCCCcCCc-cCcccccCchhCCEEeCcCCcCCccCHhhhcCcccccccc
Confidence 478999999999888778889999999999999998874 4456799999999999999999877778899999999999
Q ss_pred ccCccccCCccccccCCCCCcEEeccccccCcchhHHHhhccccceEEEeccCCCccccccccccCCCCC----ceeecc
Q 036411 88 ISYNQLSGNFPSVLTNLTSLEYLDLSFIDFQGTFLINSLANHSKLEVLVLSSGNDMLQVKTENWLPTYPL----KVLQLS 163 (487)
Q Consensus 88 l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~L----~~L~l~ 163 (487)
+++|.++...+..+..+++|++|++++|.+.....+..++.+++|++|+++++. +.......+..+.+| +.++++
T Consensus 107 L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~~~~~L~l~ 185 (570)
T 2z63_A 107 AVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNK-IQSIYCTDLRVLHQMPLLNLSLDLS 185 (570)
T ss_dssp CTTSCCCCSTTCSCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSC-CCEECGGGGHHHHTCTTCCCEEECT
T ss_pred ccccccccCCCccccccccccEEecCCCccceecChhhhcccCCCCEEeCcCCc-cceecHHHccchhccchhhhhcccC
Confidence 999998866555788999999999999988765556778999999999997654 344444555555566 789999
Q ss_pred cccccccccccccCCcccEEeCCCCcccCCcchHhhhcCCCCc--------------------------------EEEcc
Q 036411 164 HCHLNVNSSFLLHQHHLKFLDLSHNQLVGNFPTWLLQNNTGLE--------------------------------VLILW 211 (487)
Q Consensus 164 ~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~--------------------------------~L~l~ 211 (487)
++.+...+.......+|+.++++++..........+..++.++ .+.+.
T Consensus 186 ~n~l~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~ 265 (570)
T 2z63_A 186 LNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLA 265 (570)
T ss_dssp TCCCCEECTTTTTTCEEEEEEEESCCSCTTHHHHHHHTTTTCEEEEEEEEECCCCSSCEECCTTTTGGGGGSEEEEEEEE
T ss_pred CCCceecCHHHhccCcceeEecccccccccchhhhhcCccccceeeeccccccCchhhhhcchhhhccccccchhhhhhh
Confidence 9888555444344448999988877433222222223333333 33333
Q ss_pred cC-CCCCCCCCCCCcCCCCCcEEEccCCcccccCCcccccccCceEEEEccCCCCCCCcchhhhccccCcEEecccccCC
Q 036411 212 NN-SFSGILPRLPNAKYDKLRHLDISTNNFSGKLPENLGIVFQKLIYLDVSKNSFEGNIPYSISEMKELITLDLSRNNFS 290 (487)
Q Consensus 212 ~~-~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 290 (487)
++ .+....+. .+..+++|+.++++++.+. .++..+... +|++|++++|.+. ..+. ..+++|+.|++++|.+.
T Consensus 266 ~~~~~~~~~~~-~~~~l~~L~~L~l~~~~l~-~l~~~~~~~--~L~~L~l~~n~~~-~l~~--~~l~~L~~L~l~~n~~~ 338 (570)
T 2z63_A 266 YLDYYLDDIID-LFNCLTNVSSFSLVSVTIE-RVKDFSYNF--GWQHLELVNCKFG-QFPT--LKLKSLKRLTFTSNKGG 338 (570)
T ss_dssp ETTEEESCSTT-TTGGGTTCSEEEEESCEEC-SCCBCCSCC--CCSEEEEESCBCS-SCCB--CBCSSCCEEEEESCBSC
T ss_pred cchhhhhhchh-hhcCcCcccEEEecCccch-hhhhhhccC--CccEEeeccCccc-ccCc--ccccccCEEeCcCCccc
Confidence 33 22222222 3467889999999999887 566665543 8999999999987 4433 47889999999999987
Q ss_pred CCCchhhhcCCCCCcEEECCCCccCCCC--CcCCcCCCCccEEEcCCCcccccccccccCCCcccEEEccCCccCCCch-
Q 036411 291 GELPRSIFSSCLSLETLDLSNNNFYGQL--FPNFMNLTHLSSLRLNNNHFSGKMADGLLSSTLLDVLDVSNNKLSGDIP- 367 (487)
Q Consensus 291 ~~~~~~~~~~~~~L~~L~l~~~~~~~~~--~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~- 367 (487)
+..+. ..+++|++|++++|.+.+.. +..+..+++|+.|++++|.+.+.... +..+++|++|++++|.+.+..+
T Consensus 339 ~~~~~---~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~-~~~l~~L~~L~l~~n~l~~~~~~ 414 (570)
T 2z63_A 339 NAFSE---VDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSN-FLGLEQLEHLDFQHSNLKQMSEF 414 (570)
T ss_dssp CBCCC---CBCTTCCEEECCSSCCBEEEEEEHHHHTCSCCCEEECCSCSEEEEEEE-EETCTTCCEEECTTSEEESCTTS
T ss_pred ccccc---ccCCCCCEEeCcCCccCccccccccccccCccCEEECCCCcccccccc-ccccCCCCEEEccCCccccccch
Confidence 55444 56899999999999886543 45677899999999999998855544 8899999999999999886655
Q ss_pred hhhcccccccEEecCCccccCcchhhhccCcCCcEEeccCCccc--cccccccCCCcceEEEeeCcccCCcchHhhhccC
Q 036411 368 HWIGNFSVLWLLLMSENYLQGSIPVQLGNLESLEFIDISENGLS--VSMVSLSNLSSVKHIYLHNNAINGLIPIALLRSS 445 (487)
Q Consensus 368 ~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~--~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~ 445 (487)
..+..+++|++|++++|.+.+..+..+..+++|+.|++++|.+. ..+..+..+++|++|++++|.+++..+.++..++
T Consensus 415 ~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~ 494 (570)
T 2z63_A 415 SVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLS 494 (570)
T ss_dssp CTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCT
T ss_pred hhhhcCCCCCEEeCcCCcccccchhhhhcCCcCcEEECcCCcCccccchhhhhcccCCCEEECCCCccccCChhhhhccc
Confidence 57889999999999999998888888999999999999999986 4667788999999999999999988888999999
Q ss_pred cceEEeCCCCcccccCcccccccCceeEEeccCCccCCCCCC
Q 036411 446 TLLTLDLRDNKFFGRIPHQINELSNLHFLLLRGNSLQGRIPN 487 (487)
Q Consensus 446 ~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~p~ 487 (487)
+|+.|++++|++++..+..+..+++|+.|++++|++.+..|.
T Consensus 495 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~~ 536 (570)
T 2z63_A 495 SLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPR 536 (570)
T ss_dssp TCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTTT
T ss_pred CCCEEeCCCCcCCCCCHHHhhcccCCcEEEecCCcccCCCcc
Confidence 999999999999988888999999999999999999998874
|
| >3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-44 Score=375.68 Aligned_cols=465 Identities=22% Similarity=0.243 Sum_probs=295.1
Q ss_pred cccccEEecCCccccccccccccCCCCCcEEEccCccccCCcccccccCCCCCcEEECCCCccCCCcchhccCCCCccEE
Q 036411 7 LKQLKILNLGFNFFIDSILPYLNTLTSLTTLNLRYNKIEGSRTKQGICNLKNLLELDLSSNNFEGHLPQCLNNLTHLKVL 86 (487)
Q Consensus 7 ~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L 86 (487)
.+++++|++++|.+.+..+..|+.+++|++|++++|...+.+.+.+|.++++|++|++++|.+....|..+.++++|++|
T Consensus 23 p~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L 102 (844)
T 3j0a_A 23 LNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFEL 102 (844)
T ss_dssp CTTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECTTSSCSCSSCCCE
T ss_pred CCCcCEEECCCCcCCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCHhHccCCcccCEe
Confidence 36899999999998888888999999999999999966555667789999999999999999987778999999999999
Q ss_pred eccCccccCCcccc--ccCCCCCcEEeccccccCcchhHHHhhccccceEEEeccCCCccccccccccCC--CCCceeec
Q 036411 87 DISYNQLSGNFPSV--LTNLTSLEYLDLSFIDFQGTFLINSLANHSKLEVLVLSSGNDMLQVKTENWLPT--YPLKVLQL 162 (487)
Q Consensus 87 ~l~~~~~~~~~~~~--~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~--~~L~~L~l 162 (487)
++++|.++...+.. +.++++|++|++++|.+.+......++.+++|++|+++++. +.......+... ++|+.|++
T Consensus 103 ~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~-i~~~~~~~l~~l~~~~L~~L~L 181 (844)
T 3j0a_A 103 RLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQ-IFLVCEHELEPLQGKTLSFFSL 181 (844)
T ss_dssp ECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSC-CCCCCSGGGHHHHHCSSCCCEE
T ss_pred eCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCc-CCeeCHHHcccccCCccceEEC
Confidence 99999988655544 88999999999999998876666788999999999998754 333333344433 68999999
Q ss_pred ccccc-cccccccccCCc------ccEEeCCCCcccCCcchHhhhc----------------------------------
Q 036411 163 SHCHL-NVNSSFLLHQHH------LKFLDLSHNQLVGNFPTWLLQN---------------------------------- 201 (487)
Q Consensus 163 ~~~~~-~~~~~~~~~~~~------L~~L~l~~~~~~~~~~~~~~~~---------------------------------- 201 (487)
+.|.+ ...+..+..+++ |+.|++++|.+.+..+..+...
T Consensus 182 ~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~~~~~l~~~~~~~f~ 261 (844)
T 3j0a_A 182 AANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFA 261 (844)
T ss_dssp CCSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBCSSSCSSSTTGGGTTTT
T ss_pred CCCccccccccchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCcccccceecccccccccccccccCCCChhhhh
Confidence 98887 334444444444 8999999987765554443322
Q ss_pred ---CCCCcEEEcccCCCCCCCCCCCCcCCCCCcEEEccCCcccccCCcccccccCceEEEEccCCCCCCCcchhhhcccc
Q 036411 202 ---NTGLEVLILWNNSFSGILPRLPNAKYDKLRHLDISTNNFSGKLPENLGIVFQKLIYLDVSKNSFEGNIPYSISEMKE 278 (487)
Q Consensus 202 ---~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~ 278 (487)
.++|+.|++++|.+....+. .+..+++|+.|++++|.+.+..+..+ ..+++|++|++++|.+.+..+..+..+++
T Consensus 262 ~l~~~~L~~L~Ls~n~l~~~~~~-~~~~l~~L~~L~L~~n~i~~~~~~~~-~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~ 339 (844)
T 3j0a_A 262 GLARSSVRHLDLSHGFVFSLNSR-VFETLKDLKVLNLAYNKINKIADEAF-YGLDNLQVLNLSYNLLGELYSSNFYGLPK 339 (844)
T ss_dssp TTTTSCCCEEECTTCCCCEECSC-CSSSCCCCCEEEEESCCCCEECTTTT-TTCSSCCEEEEESCCCSCCCSCSCSSCTT
T ss_pred ccccCCccEEECCCCcccccChh-hhhcCCCCCEEECCCCcCCCCChHHh-cCCCCCCEEECCCCCCCccCHHHhcCCCC
Confidence 13455555555544433222 23445555555555555543322222 22345555555555555444445555555
Q ss_pred CcEEecccccCCCCCchhhhcCCCCCcEEECCCCccCCCCCcCCcCCCCccEEEcCCCcccccccccccCCCcccEEEcc
Q 036411 279 LITLDLSRNNFSGELPRSIFSSCLSLETLDLSNNNFYGQLFPNFMNLTHLSSLRLNNNHFSGKMADGLLSSTLLDVLDVS 358 (487)
Q Consensus 279 L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~ 358 (487)
|+.|++++|.+. .++...|..+++|+.|++++|.+.+. ..+++|+.|.+.+|.+.. .+. ....++.++++
T Consensus 340 L~~L~L~~N~i~-~~~~~~~~~l~~L~~L~Ls~N~l~~i-----~~~~~L~~L~l~~N~l~~-l~~---~~~~l~~L~ls 409 (844)
T 3j0a_A 340 VAYIDLQKNHIA-IIQDQTFKFLEKLQTLDLRDNALTTI-----HFIPSIPDIFLSGNKLVT-LPK---INLTANLIHLS 409 (844)
T ss_dssp CCEEECCSCCCC-CCCSSCSCSCCCCCEEEEETCCSCCC-----SSCCSCSEEEEESCCCCC-CCC---CCTTCCEEECC
T ss_pred CCEEECCCCCCC-ccChhhhcCCCCCCEEECCCCCCCcc-----cCCCCcchhccCCCCccc-ccc---cccccceeecc
Confidence 555555555554 44444445555555555555554321 114445555555554431 111 12344555555
Q ss_pred CCccCCC-chhhhcccccccEEecCCccccCcchh-hhccCcCCcEEeccCCccccc------cccccCCCcceEEEeeC
Q 036411 359 NNKLSGD-IPHWIGNFSVLWLLLMSENYLQGSIPV-QLGNLESLEFIDISENGLSVS------MVSLSNLSSVKHIYLHN 430 (487)
Q Consensus 359 ~~~~~~~-~~~~~~~~~~L~~L~l~~~~~~~~~~~-~~~~~~~L~~l~l~~~~~~~~------~~~~~~~~~L~~L~l~~ 430 (487)
+|++.+. .+..+..+++|++|++++|.+++..+. .+..+++|+.|++++|.+... ...+..+++|+.|++++
T Consensus 410 ~N~l~~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~l~~L~~L~Ls~ 489 (844)
T 3j0a_A 410 ENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNH 489 (844)
T ss_dssp SCCCCSSTTHHHHTTCTTCCEEEEESCCCCCCCSSSSSCSCTTCCBCEEESCCCSSSCCSCCCSSCSSCBCCEECCCCCH
T ss_pred cCccccCchhhhhhcCCccceeeCCCCcccccccccccccCCccccccCCCCccccccccccchhhhcCcccccEEECCC
Confidence 5554432 122344666777777777766533222 234456666666666665311 12344566677777777
Q ss_pred cccCCcchHhhhccCcceEEeCCCCcccccCcccccccCceeEEeccCCccCCCCC
Q 036411 431 NAINGLIPIALLRSSTLLTLDLRDNKFFGRIPHQINELSNLHFLLLRGNSLQGRIP 486 (487)
Q Consensus 431 ~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~p 486 (487)
|.+++..+..+..+++|+.|+|++|.+++..+..+. ++|+.|++++|++.+.+|
T Consensus 490 N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~--~~L~~L~Ls~N~l~~~~~ 543 (844)
T 3j0a_A 490 NYLNSLPPGVFSHLTALRGLSLNSNRLTVLSHNDLP--ANLEILDISRNQLLAPNP 543 (844)
T ss_dssp HHHTTCCTTSSSSCCSCSEEEEESCCCSSCCCCCCC--SCCCEEEEEEECCCCCCS
T ss_pred CcccccChhHccchhhhheeECCCCCCCccChhhhh--ccccEEECCCCcCCCCCh
Confidence 777666666666667777777777776655444444 666666666666666655
|
| >2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.6e-44 Score=356.71 Aligned_cols=467 Identities=18% Similarity=0.198 Sum_probs=300.1
Q ss_pred ccccEEecCCccccccccccccCCCCCcEEEccCccccCCcccccccCCCCCcEEECCCCccCCCcchhccCCCCccEEe
Q 036411 8 KQLKILNLGFNFFIDSILPYLNTLTSLTTLNLRYNKIEGSRTKQGICNLKNLLELDLSSNNFEGHLPQCLNNLTHLKVLD 87 (487)
Q Consensus 8 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~ 87 (487)
++|++|++++|.+.+..+..+..+++|++|++++|.+.+ ..+++|.++++|++|++++|.+....+..++++++|++|+
T Consensus 26 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~-~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ 104 (549)
T 2z81_A 26 AAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINT-IEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLN 104 (549)
T ss_dssp TTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCE-ECTTTTTTCTTCCEEECTTSCCCSCCHHHHTTCTTCCEEE
T ss_pred CCccEEECcCCccCccChhhhhcCCcccEEECCCCCcCc-cChhhccccccCCEEECCCCccCccCHHHhccCCCCcEEE
Confidence 356666666665555555555666666666666665542 2234455666666666666666544444456666666666
Q ss_pred ccCccccC-CccccccCCCCCcEEeccccccCcchhHHHhhccccceEEEeccCCCccccccccccCCCCCceeeccccc
Q 036411 88 ISYNQLSG-NFPSVLTNLTSLEYLDLSFIDFQGTFLINSLANHSKLEVLVLSSGNDMLQVKTENWLPTYPLKVLQLSHCH 166 (487)
Q Consensus 88 l~~~~~~~-~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 166 (487)
+++|.++. ..+..+.++++|++|++++|...+......++.+++|++|+++++. +.......+..+++|++|++..+.
T Consensus 105 Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~l~~l~~L~~L~l~~n~ 183 (549)
T 2z81_A 105 LMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALS-LRNYQSQSLKSIRDIHHLTLHLSE 183 (549)
T ss_dssp CTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETT-CCEECTTTTTTCSEEEEEEEECSB
T ss_pred CCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCc-ccccChhhhhccccCceEecccCc
Confidence 66665543 1334555566666666665553333333445555555655555433 222233344444555555555555
Q ss_pred cccccccc-ccCCcccEEeCCCCcccCCc--chHhhhcCCCCcEEEcccCCCCCCCCC---CCCcCCCCCcEEEccCCcc
Q 036411 167 LNVNSSFL-LHQHHLKFLDLSHNQLVGNF--PTWLLQNNTGLEVLILWNNSFSGILPR---LPNAKYDKLRHLDISTNNF 240 (487)
Q Consensus 167 ~~~~~~~~-~~~~~L~~L~l~~~~~~~~~--~~~~~~~~~~L~~L~l~~~~~~~~~~~---~~~~~~~~L~~L~l~~~~~ 240 (487)
....+..+ ..+++|+.|++++|.+.+.. +......++.|+.|.+.++.+...... .....+++++.+++.+|.+
T Consensus 184 ~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~L~~l~l~~~~~ 263 (549)
T 2z81_A 184 SAFLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDCTL 263 (549)
T ss_dssp STTHHHHHHHSTTTBSEEEEESCBCTTCCCCCCSSCCCCCCCCEEEEESCEEEHHHHHHHHGGGGGCTTCCEEEEESCEE
T ss_pred ccccchhhHhhcccccEEEccCCccccccccccchhhhhhcccceeccccccchhHHHHHHHHhhhhccccccccccccc
Confidence 43333322 23455555555555544211 111222345555555555443221000 0112345556666666554
Q ss_pred cccCC-----cccccccCceEEEEccCCCCCCC-----cchhhhccccCcEEecccccCCCCCchhhhcCCCCCcEEECC
Q 036411 241 SGKLP-----ENLGIVFQKLIYLDVSKNSFEGN-----IPYSISEMKELITLDLSRNNFSGELPRSIFSSCLSLETLDLS 310 (487)
Q Consensus 241 ~~~~~-----~~~~~~~~~L~~L~l~~~~~~~~-----~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~ 310 (487)
.+... .......++++.+++.++.+... ........++|+.|++++|.+. .+|..+++.+++|++|+++
T Consensus 264 ~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~l~~~~~~~~~L~~L~l~~n~l~-~ip~~~~~~l~~L~~L~Ls 342 (549)
T 2z81_A 264 NGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVF-LVPCSFSQHLKSLEFLDLS 342 (549)
T ss_dssp ECCSCCCCCTTTCCCCCTTCCEEEEESCBCSCGGGSCCCCHHHHHSTTCCEEEEESSCCC-CCCHHHHHHCTTCCEEECC
T ss_pred cccccccccchhhhhhhcccccccccccccchhhhcccchhhhhhcccceEEEeccCccc-cCCHHHHhcCccccEEEcc
Confidence 32100 01112345677777766655421 1122344578999999999987 8998887889999999999
Q ss_pred CCccCCCCC---cCCcCCCCccEEEcCCCccccccc--ccccCCCcccEEEccCCccCCCchhhhcccccccEEecCCcc
Q 036411 311 NNNFYGQLF---PNFMNLTHLSSLRLNNNHFSGKMA--DGLLSSTLLDVLDVSNNKLSGDIPHWIGNFSVLWLLLMSENY 385 (487)
Q Consensus 311 ~~~~~~~~~---~~~~~~~~L~~L~l~~~~~~~~~~--~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 385 (487)
+|.+.+..+ ..+..+++|+.|++++|.+++... ..+..+++|++|++++|+++ .+|..+..+++|++|++++|.
T Consensus 343 ~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~~~~L~~L~Ls~N~ 421 (549)
T 2z81_A 343 ENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFH-PMPDSCQWPEKMRFLNLSSTG 421 (549)
T ss_dssp SSCCCHHHHHHHTCTTSSTTCCEEECTTSCCCCHHHHHHHGGGCTTCCEEECTTCCCC-CCCSCCCCCTTCCEEECTTSC
T ss_pred CCccccccccchhhhhccccCcEEEccCCcccccccchhhhhcCCCCCEEECCCCCCc-cCChhhcccccccEEECCCCC
Confidence 999876442 336788999999999999975432 45788999999999999998 678888899999999999999
Q ss_pred ccCcchhhhccCcCCcEEeccCCccccccccccCCCcceEEEeeCcccCCcchHhhhccCcceEEeCCCCcccccCcccc
Q 036411 386 LQGSIPVQLGNLESLEFIDISENGLSVSMVSLSNLSSVKHIYLHNNAINGLIPIALLRSSTLLTLDLRDNKFFGRIPHQI 465 (487)
Q Consensus 386 ~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l 465 (487)
+. ..+..+. ++|+.|++++|+++... ..+++|++|++++|+++.+.. ...+++|+.|++++|++++..+..+
T Consensus 422 l~-~l~~~~~--~~L~~L~Ls~N~l~~~~---~~l~~L~~L~Ls~N~l~~ip~--~~~l~~L~~L~Ls~N~l~~~~~~~~ 493 (549)
T 2z81_A 422 IR-VVKTCIP--QTLEVLDVSNNNLDSFS---LFLPRLQELYISRNKLKTLPD--ASLFPVLLVMKISRNQLKSVPDGIF 493 (549)
T ss_dssp CS-CCCTTSC--TTCSEEECCSSCCSCCC---CCCTTCCEEECCSSCCSSCCC--GGGCTTCCEEECCSSCCCCCCTTGG
T ss_pred cc-cccchhc--CCceEEECCCCChhhhc---ccCChhcEEECCCCccCcCCC--cccCccCCEEecCCCccCCcCHHHH
Confidence 87 3444432 68999999999987543 478999999999999996543 3568999999999999998888899
Q ss_pred cccCceeEEeccCCccCCCCC
Q 036411 466 NELSNLHFLLLRGNSLQGRIP 486 (487)
Q Consensus 466 ~~l~~L~~L~l~~~~~~~~~p 486 (487)
..+++|+.|++++||+.+..|
T Consensus 494 ~~l~~L~~L~l~~N~~~~~~~ 514 (549)
T 2z81_A 494 DRLTSLQKIWLHTNPWDCSCP 514 (549)
T ss_dssp GGCTTCCEEECCSSCBCCCHH
T ss_pred hcCcccCEEEecCCCccCCCc
Confidence 999999999999999988765
|
| >3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=7.4e-42 Score=354.89 Aligned_cols=463 Identities=23% Similarity=0.233 Sum_probs=363.4
Q ss_pred ccccccccccEEecCCccccccc-cccccCCCCCcEEEccCccccCCcccccccCCCCCcEEECCCCccCCCcchh--cc
Q 036411 2 DSFGSLKQLKILNLGFNFFIDSI-LPYLNTLTSLTTLNLRYNKIEGSRTKQGICNLKNLLELDLSSNNFEGHLPQC--LN 78 (487)
Q Consensus 2 ~~~~~~~~L~~L~l~~~~~~~~~-~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~--~~ 78 (487)
++|.++++|++|++++|.....+ +++|+.+++|++|++++|.+.+ ..+..|.++++|++|++++|.+....+.. +.
T Consensus 42 ~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~-~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~ 120 (844)
T 3j0a_A 42 SSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYF-LHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFR 120 (844)
T ss_dssp SSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCE-ECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCS
T ss_pred hHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcc-cCHhHccCCcccCEeeCcCCCCCcccccCcccc
Confidence 46889999999999999655444 7789999999999999999874 34678999999999999999998655554 89
Q ss_pred CCCCccEEeccCccccCCcc-ccccCCCCCcEEeccccccCcchhHHHhhcc--ccceEEEeccCCCccccccccccCCC
Q 036411 79 NLTHLKVLDISYNQLSGNFP-SVLTNLTSLEYLDLSFIDFQGTFLINSLANH--SKLEVLVLSSGNDMLQVKTENWLPTY 155 (487)
Q Consensus 79 ~l~~L~~L~l~~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~--~~L~~l~l~~~~~~~~~~~~~~~~~~ 155 (487)
++++|++|++++|.++...+ ..|.++++|++|++++|.+.+.. ...+..+ ++|+.++++.+...... ...+..++
T Consensus 121 ~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~-~~~l~~l~~~~L~~L~L~~n~l~~~~-~~~~~~~~ 198 (844)
T 3j0a_A 121 NLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVC-EHELEPLQGKTLSFFSLAANSLYSRV-SVDWGKCM 198 (844)
T ss_dssp SCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCC-SGGGHHHHHCSSCCCEECCSBSCCCC-CCCCCSSS
T ss_pred ccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCeeC-HHHcccccCCccceEECCCCcccccc-ccchhhcC
Confidence 99999999999999876544 57899999999999999886432 2344444 88999999776433322 22222222
Q ss_pred ------CCceeeccccccc-ccccc------------------------------------ccc--CCcccEEeCCCCcc
Q 036411 156 ------PLKVLQLSHCHLN-VNSSF------------------------------------LLH--QHHLKFLDLSHNQL 190 (487)
Q Consensus 156 ------~L~~L~l~~~~~~-~~~~~------------------------------------~~~--~~~L~~L~l~~~~~ 190 (487)
.|+.|++++|.+. ..+.. +.. .++|+.|++++|.+
T Consensus 199 ~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~~~~~l~~~~~~~f~~l~~~~L~~L~Ls~n~l 278 (844)
T 3j0a_A 199 NPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFV 278 (844)
T ss_dssp CTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBCSSSCSSSTTGGGTTTTTTTTSCCCEEECTTCCC
T ss_pred CccccCceeEEecCCCcCchhHHHHHHhhcCcccccceecccccccccccccccCCCChhhhhccccCCccEEECCCCcc
Confidence 4888888887542 11111 111 26899999999988
Q ss_pred cCCcchHhhhcCCCCcEEEcccCCCCCCCCCCCCcCCCCCcEEEccCCcccccCCcccccccCceEEEEccCCCCCCCcc
Q 036411 191 VGNFPTWLLQNNTGLEVLILWNNSFSGILPRLPNAKYDKLRHLDISTNNFSGKLPENLGIVFQKLIYLDVSKNSFEGNIP 270 (487)
Q Consensus 191 ~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~ 270 (487)
. ......+..+++|+.|++++|.+....+. .+..+++|+.|++++|.+.+..+..+ ..+++|++|++++|.+....+
T Consensus 279 ~-~~~~~~~~~l~~L~~L~L~~n~i~~~~~~-~~~~l~~L~~L~Ls~N~l~~~~~~~~-~~l~~L~~L~L~~N~i~~~~~ 355 (844)
T 3j0a_A 279 F-SLNSRVFETLKDLKVLNLAYNKINKIADE-AFYGLDNLQVLNLSYNLLGELYSSNF-YGLPKVAYIDLQKNHIAIIQD 355 (844)
T ss_dssp C-EECSCCSSSCCCCCEEEEESCCCCEECTT-TTTTCSSCCEEEEESCCCSCCCSCSC-SSCTTCCEEECCSCCCCCCCS
T ss_pred c-ccChhhhhcCCCCCEEECCCCcCCCCChH-HhcCCCCCCEEECCCCCCCccCHHHh-cCCCCCCEEECCCCCCCccCh
Confidence 7 44455567899999999999998766554 45788999999999999874444444 456899999999999987777
Q ss_pred hhhhccccCcEEecccccCCCCCchhhhcCCCCCcEEECCCCccCCCCCcCCcCCCCccEEEcCCCccccccc-ccccCC
Q 036411 271 YSISEMKELITLDLSRNNFSGELPRSIFSSCLSLETLDLSNNNFYGQLFPNFMNLTHLSSLRLNNNHFSGKMA-DGLLSS 349 (487)
Q Consensus 271 ~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~-~~~~~~ 349 (487)
..+..+++|+.|++++|.+. .++. +++|+.+++++|.+... +. ...+++.|++++|.+.+... ..+..+
T Consensus 356 ~~~~~l~~L~~L~Ls~N~l~-~i~~-----~~~L~~L~l~~N~l~~l-~~---~~~~l~~L~ls~N~l~~l~~~~~~~~l 425 (844)
T 3j0a_A 356 QTFKFLEKLQTLDLRDNALT-TIHF-----IPSIPDIFLSGNKLVTL-PK---INLTANLIHLSENRLENLDILYFLLRV 425 (844)
T ss_dssp SCSCSCCCCCEEEEETCCSC-CCSS-----CCSCSEEEEESCCCCCC-CC---CCTTCCEEECCSCCCCSSTTHHHHTTC
T ss_pred hhhcCCCCCCEEECCCCCCC-cccC-----CCCcchhccCCCCcccc-cc---cccccceeecccCccccCchhhhhhcC
Confidence 77889999999999999987 4443 78999999999998743 22 24679999999999874322 234578
Q ss_pred CcccEEEccCCccCCCchh-hhcccccccEEecCCccccC-----cchhhhccCcCCcEEeccCCcccccccc-ccCCCc
Q 036411 350 TLLDVLDVSNNKLSGDIPH-WIGNFSVLWLLLMSENYLQG-----SIPVQLGNLESLEFIDISENGLSVSMVS-LSNLSS 422 (487)
Q Consensus 350 ~~L~~L~l~~~~~~~~~~~-~~~~~~~L~~L~l~~~~~~~-----~~~~~~~~~~~L~~l~l~~~~~~~~~~~-~~~~~~ 422 (487)
++|+.|++++|++++..+. .+..+++|++|++++|.+.. ..+..+..+++|+.|++++|.++..... +..+++
T Consensus 426 ~~L~~L~Ls~N~l~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~ 505 (844)
T 3j0a_A 426 PHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTA 505 (844)
T ss_dssp TTCCEEEEESCCCCCCCSSSSSCSCTTCCBCEEESCCCSSSCCSCCCSSCSSCBCCEECCCCCHHHHTTCCTTSSSSCCS
T ss_pred CccceeeCCCCcccccccccccccCCccccccCCCCccccccccccchhhhcCcccccEEECCCCcccccChhHccchhh
Confidence 9999999999998754332 45668999999999998863 3345678889999999999999755544 668999
Q ss_pred ceEEEeeCcccCCcchHhhhccCcceEEeCCCCcccccCcccccccCceeEEeccCCccCCCC
Q 036411 423 VKHIYLHNNAINGLIPIALLRSSTLLTLDLRDNKFFGRIPHQINELSNLHFLLLRGNSLQGRI 485 (487)
Q Consensus 423 L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~ 485 (487)
|+.|++++|++++..+..+. ++|+.|++++|++++..|..+ ++|+.|++++||+.+..
T Consensus 506 L~~L~Ls~N~l~~l~~~~~~--~~L~~L~Ls~N~l~~~~~~~~---~~L~~l~l~~Np~~C~c 563 (844)
T 3j0a_A 506 LRGLSLNSNRLTVLSHNDLP--ANLEILDISRNQLLAPNPDVF---VSLSVLDITHNKFICEC 563 (844)
T ss_dssp CSEEEEESCCCSSCCCCCCC--SCCCEEEEEEECCCCCCSCCC---SSCCEEEEEEECCCCSS
T ss_pred hheeECCCCCCCccChhhhh--ccccEEECCCCcCCCCChhHh---CCcCEEEecCCCccccc
Confidence 99999999999988777666 899999999999988888665 58899999999987643
|
| >2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.4e-41 Score=338.08 Aligned_cols=445 Identities=23% Similarity=0.228 Sum_probs=355.4
Q ss_pred ccccccccccEEecCCccccccccccccCCCCCcEEEccCccccCCcccccccCCCCCcEEECCCCccCCCcchhccCCC
Q 036411 2 DSFGSLKQLKILNLGFNFFIDSILPYLNTLTSLTTLNLRYNKIEGSRTKQGICNLKNLLELDLSSNNFEGHLPQCLNNLT 81 (487)
Q Consensus 2 ~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~ 81 (487)
.+|.++++|++|++++|.+.+..+.+|+.+++|++|++++|.+.+ ..+..|.++++|++|+++++.+....+..+++++
T Consensus 46 ~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~-~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~ 124 (570)
T 2z63_A 46 YSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQS-LALGAFSGLSSLQKLVAVETNLASLENFPIGHLK 124 (570)
T ss_dssp TTTTTCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCE-ECTTTTTTCTTCCEEECTTSCCCCSTTCSCTTCT
T ss_pred hHhhCCCCceEEECCCCcCCccCcccccCchhCCEEeCcCCcCCc-cCHhhhcCccccccccccccccccCCCccccccc
Confidence 368899999999999999888878889999999999999999863 4456799999999999999999865555799999
Q ss_pred CccEEeccCccccC-CccccccCCCCCcEEeccccccCcchhHHHhhccccc----eEEEeccCCCccccccccccCCCC
Q 036411 82 HLKVLDISYNQLSG-NFPSVLTNLTSLEYLDLSFIDFQGTFLINSLANHSKL----EVLVLSSGNDMLQVKTENWLPTYP 156 (487)
Q Consensus 82 ~L~~L~l~~~~~~~-~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L----~~l~l~~~~~~~~~~~~~~~~~~~ 156 (487)
+|++|++++|.++. .+|..+.++++|++|++++|.+.+ .....++.+++| +.++++.+. +..+....+... +
T Consensus 125 ~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~l~~-~~~~~~~~l~~L~~~~~~L~l~~n~-l~~~~~~~~~~~-~ 201 (570)
T 2z63_A 125 TLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQS-IYCTDLRVLHQMPLLNLSLDLSLNP-MNFIQPGAFKEI-R 201 (570)
T ss_dssp TCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSCCCE-ECGGGGHHHHTCTTCCCEEECTTCC-CCEECTTTTTTC-E
T ss_pred cccEEecCCCccceecChhhhcccCCCCEEeCcCCccce-ecHHHccchhccchhhhhcccCCCC-ceecCHHHhccC-c
Confidence 99999999999886 368899999999999999998874 334566777777 788887653 444444444444 7
Q ss_pred Cceeecccccc--cccccccccCC--------------------------------cccEEeCCCC-cccCCcchHhhhc
Q 036411 157 LKVLQLSHCHL--NVNSSFLLHQH--------------------------------HLKFLDLSHN-QLVGNFPTWLLQN 201 (487)
Q Consensus 157 L~~L~l~~~~~--~~~~~~~~~~~--------------------------------~L~~L~l~~~-~~~~~~~~~~~~~ 201 (487)
|+.+++.++.. ...+..+..++ .++.+++.++ .+.+..+ ..+..
T Consensus 202 L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~-~~~~~ 280 (570)
T 2z63_A 202 LHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDII-DLFNC 280 (570)
T ss_dssp EEEEEEESCCSCTTHHHHHHHTTTTCEEEEEEEEECCCCSSCEECCTTTTGGGGGSEEEEEEEEETTEEESCST-TTTGG
T ss_pred ceeEecccccccccchhhhhcCccccceeeeccccccCchhhhhcchhhhccccccchhhhhhhcchhhhhhch-hhhcC
Confidence 88888877632 11111111222 2344555544 3333333 33457
Q ss_pred CCCCcEEEcccCCCCCCCCCCCCcCCCCCcEEEccCCcccccCCcccccccCceEEEEccCCCCCCCcchhhhccccCcE
Q 036411 202 NTGLEVLILWNNSFSGILPRLPNAKYDKLRHLDISTNNFSGKLPENLGIVFQKLIYLDVSKNSFEGNIPYSISEMKELIT 281 (487)
Q Consensus 202 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~ 281 (487)
+++|+.+++.++.+...... ...+ +|+.|++.+|.+. .++.. .+++|++|++++|.+....+. ..+++|+.
T Consensus 281 l~~L~~L~l~~~~l~~l~~~--~~~~-~L~~L~l~~n~~~-~l~~~---~l~~L~~L~l~~n~~~~~~~~--~~~~~L~~ 351 (570)
T 2z63_A 281 LTNVSSFSLVSVTIERVKDF--SYNF-GWQHLELVNCKFG-QFPTL---KLKSLKRLTFTSNKGGNAFSE--VDLPSLEF 351 (570)
T ss_dssp GTTCSEEEEESCEECSCCBC--CSCC-CCSEEEEESCBCS-SCCBC---BCSSCCEEEEESCBSCCBCCC--CBCTTCCE
T ss_pred cCcccEEEecCccchhhhhh--hccC-CccEEeeccCccc-ccCcc---cccccCEEeCcCCcccccccc--ccCCCCCE
Confidence 89999999999987754333 2445 8999999999887 55553 468999999999988755443 67899999
Q ss_pred EecccccCCCCCc--hhhhcCCCCCcEEECCCCccCCCCCcCCcCCCCccEEEcCCCccccccc-ccccCCCcccEEEcc
Q 036411 282 LDLSRNNFSGELP--RSIFSSCLSLETLDLSNNNFYGQLFPNFMNLTHLSSLRLNNNHFSGKMA-DGLLSSTLLDVLDVS 358 (487)
Q Consensus 282 L~l~~~~~~~~~~--~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~-~~~~~~~~L~~L~l~ 358 (487)
|++++|.+. ..+ ...+..+++|+.|++++|.+.+..+. +..+++|++|++++|.+.+..+ ..+..+++|++|+++
T Consensus 352 L~l~~n~l~-~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~-~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~ 429 (570)
T 2z63_A 352 LDLSRNGLS-FKGCCSQSDFGTTSLKYLDLSFNGVITMSSN-FLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDIS 429 (570)
T ss_dssp EECCSSCCB-EEEEEEHHHHTCSCCCEEECCSCSEEEEEEE-EETCTTCCEEECTTSEEESCTTSCTTTTCTTCCEEECT
T ss_pred EeCcCCccC-ccccccccccccCccCEEECCCCcccccccc-ccccCCCCEEEccCCccccccchhhhhcCCCCCEEeCc
Confidence 999999987 442 34467899999999999998754443 8889999999999999876544 567889999999999
Q ss_pred CCccCCCchhhhcccccccEEecCCcccc-CcchhhhccCcCCcEEeccCCccccc-cccccCCCcceEEEeeCcccCCc
Q 036411 359 NNKLSGDIPHWIGNFSVLWLLLMSENYLQ-GSIPVQLGNLESLEFIDISENGLSVS-MVSLSNLSSVKHIYLHNNAINGL 436 (487)
Q Consensus 359 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~~-~~~~~~~~~~~~L~~l~l~~~~~~~~-~~~~~~~~~L~~L~l~~~~~~~~ 436 (487)
+|.+.+..+..+..+++|++|++++|.+. +..|..+..+++|+.|++++|+++.. +..+..+++|++|++++|++++.
T Consensus 430 ~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~ 509 (570)
T 2z63_A 430 HTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSV 509 (570)
T ss_dssp TSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCC
T ss_pred CCcccccchhhhhcCCcCcEEECcCCcCccccchhhhhcccCCCEEECCCCccccCChhhhhcccCCCEEeCCCCcCCCC
Confidence 99998888899999999999999999987 46788899999999999999999765 56777999999999999999998
Q ss_pred chHhhhccCcceEEeCCCCcccccCc
Q 036411 437 IPIALLRSSTLLTLDLRDNKFFGRIP 462 (487)
Q Consensus 437 ~~~~~~~~~~L~~L~l~~~~~~~~~~ 462 (487)
.+..+..+++|+.|++++|++++..+
T Consensus 510 ~~~~~~~l~~L~~L~l~~N~~~~~~~ 535 (570)
T 2z63_A 510 PDGIFDRLTSLQKIWLHTNPWDCSCP 535 (570)
T ss_dssp CTTTTTTCTTCCEEECCSSCBCCCTT
T ss_pred CHHHhhcccCCcEEEecCCcccCCCc
Confidence 88889999999999999999976554
|
| >2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.9e-42 Score=338.76 Aligned_cols=455 Identities=20% Similarity=0.192 Sum_probs=341.6
Q ss_pred cEEecCCccccccccccccCCCCCcEEEccCccccCCcccccccCCCCCcEEECCCCccCCCcchhccCCCCccEEeccC
Q 036411 11 KILNLGFNFFIDSILPYLNTLTSLTTLNLRYNKIEGSRTKQGICNLKNLLELDLSSNNFEGHLPQCLNNLTHLKVLDISY 90 (487)
Q Consensus 11 ~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~ 90 (487)
++|+++++.+.. +|..+. ++|++|++++|.+.+. .+..|.++++|++|++++|.+....|..+.++++|++|++++
T Consensus 3 ~~l~ls~n~l~~-ip~~~~--~~L~~L~Ls~n~i~~~-~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~ 78 (520)
T 2z7x_B 3 FLVDRSKNGLIH-VPKDLS--QKTTILNISQNYISEL-WTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSH 78 (520)
T ss_dssp CEEECTTSCCSS-CCCSCC--TTCSEEECCSSCCCCC-CHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCS
T ss_pred ceEecCCCCccc-cccccc--ccccEEECCCCccccc-ChhhccccccccEEecCCCccCCcChHHhhcccCCCEEecCC
Confidence 578888887764 444443 7888888888888643 345688888888888888888866678888888888888888
Q ss_pred ccccCCccccccCCCCCcEEeccccccCcchhHHHhhccccceEEEeccCCCccccccccccCCCCC--ceeecccccc-
Q 036411 91 NQLSGNFPSVLTNLTSLEYLDLSFIDFQGTFLINSLANHSKLEVLVLSSGNDMLQVKTENWLPTYPL--KVLQLSHCHL- 167 (487)
Q Consensus 91 ~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~L--~~L~l~~~~~- 167 (487)
|.++ .+|.. .+++|++|++++|.+.+...+..++.+++|++|+++++.-.. ..+..+++| +.+++.+|.+
T Consensus 79 N~l~-~lp~~--~l~~L~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~----~~~~~l~~L~L~~L~l~~n~l~ 151 (520)
T 2z7x_B 79 NKLV-KISCH--PTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEK----SSVLPIAHLNISKVLLVLGETY 151 (520)
T ss_dssp SCCC-EEECC--CCCCCSEEECCSSCCSSCCCCGGGGGCTTCCEEEEEESSCCG----GGGGGGTTSCEEEEEEEECTTT
T ss_pred Ccee-ecCcc--ccCCccEEeccCCccccccchhhhccCCcceEEEecCcccch----hhccccccceeeEEEeeccccc
Confidence 8887 45544 788888888888888764455678888888888887754322 334555666 8888888876
Q ss_pred --cccccccccCC-cccEEeCCCCcccCCcchHhhhcCCCCcEEEcccCC-------CCCCCCCCCCcCCCCCcEEEccC
Q 036411 168 --NVNSSFLLHQH-HLKFLDLSHNQLVGNFPTWLLQNNTGLEVLILWNNS-------FSGILPRLPNAKYDKLRHLDIST 237 (487)
Q Consensus 168 --~~~~~~~~~~~-~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~-------~~~~~~~~~~~~~~~L~~L~l~~ 237 (487)
...+..+..+. +...++++++.+.+..+...+..++.|+.+++++|. +....+ .+..+++|+.+++.+
T Consensus 152 ~~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~--~l~~l~~L~~L~l~~ 229 (520)
T 2z7x_B 152 GEKEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILA--KLQTNPKLSNLTLNN 229 (520)
T ss_dssp TSSCCTTTTTTCCEEEEEEECCSSSCCCCCCCCCCTTCSEEEECCEEECCSTTTTHHHHHHHH--GGGGCTTCCEEEEEE
T ss_pred ccccccccccccccceEEEEeccCcchhhhhhhhhhcccceeeccccccccccccceeecchh--hhccccchhhccccc
Confidence 23334444433 344667788877767776666778888998888875 221111 346678899999988
Q ss_pred CcccccCCccccc--ccCceEEEEccCCCCCCCcchhh-----hccccCcEEecccccCCCCCchhhhcCC---CCCcEE
Q 036411 238 NNFSGKLPENLGI--VFQKLIYLDVSKNSFEGNIPYSI-----SEMKELITLDLSRNNFSGELPRSIFSSC---LSLETL 307 (487)
Q Consensus 238 ~~~~~~~~~~~~~--~~~~L~~L~l~~~~~~~~~~~~~-----~~~~~L~~L~l~~~~~~~~~~~~~~~~~---~~L~~L 307 (487)
+.+.+.....+.. ..++|++|++++|.+.+..+..+ ..+++|+.+++++|.+ .+|...+..+ .+|+.|
T Consensus 230 ~~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~~l~~L~~l~l~~n~~--~~p~~~~~~~~~~~~L~~L 307 (520)
T 2z7x_B 230 IETTWNSFIRILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVF--GFPQSYIYEIFSNMNIKNF 307 (520)
T ss_dssp EEEEHHHHHHHHHHHHTSSCSEEEEEEEEEESCCCCCCCCCCSCCCCEEEEEEEEECCC--CSCTHHHHHHHHTCCCSEE
T ss_pred cccCHHHHHHHHHHhhhCcccEEEeecccccCccccchhhcccccCceeEeccccccce--ecchhhhhcccccCceeEE
Confidence 8766433222211 13589999999998887677666 7889999999999888 5663322323 579999
Q ss_pred ECCCCccCCCCCcCCcCCCCccEEEcCCCcccccccccccCCCcccEEEccCCccCC--CchhhhcccccccEEecCCcc
Q 036411 308 DLSNNNFYGQLFPNFMNLTHLSSLRLNNNHFSGKMADGLLSSTLLDVLDVSNNKLSG--DIPHWIGNFSVLWLLLMSENY 385 (487)
Q Consensus 308 ~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~--~~~~~~~~~~~L~~L~l~~~~ 385 (487)
++++|.+.... .+..+++|++|++++|.+.+..+..+..+++|++|++++|++++ .+|..+..+++|++|++++|.
T Consensus 308 ~l~~n~l~~~~--~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~ 385 (520)
T 2z7x_B 308 TVSGTRMVHML--CPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNS 385 (520)
T ss_dssp EEESSCCCCCC--CCSSCCCCCEEECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSC
T ss_pred EcCCCcccccc--chhhCCcccEEEeECCccChhhhhhhccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCc
Confidence 99999876432 22578999999999999987778888899999999999999886 456778999999999999999
Q ss_pred ccCcchh-hhccCcCCcEEeccCCccccc-cccccCCCcceEEEeeCcccCCcchHhhhccCcceEEeCCCCcccccCcc
Q 036411 386 LQGSIPV-QLGNLESLEFIDISENGLSVS-MVSLSNLSSVKHIYLHNNAINGLIPIALLRSSTLLTLDLRDNKFFGRIPH 463 (487)
Q Consensus 386 ~~~~~~~-~~~~~~~L~~l~l~~~~~~~~-~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~ 463 (487)
+.+..|. .+..+++|+.|++++|+++.. +..+. ++|+.|++++|+++. +|..+..+++|+.|++++|+++...+.
T Consensus 386 l~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~--~~L~~L~Ls~N~l~~-ip~~~~~l~~L~~L~L~~N~l~~l~~~ 462 (520)
T 2z7x_B 386 VSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCLP--PRIKVLDLHSNKIKS-IPKQVVKLEALQELNVASNQLKSVPDG 462 (520)
T ss_dssp CBCCGGGCSCCCCTTCCEEECCSSCCCGGGGGSCC--TTCCEEECCSSCCCC-CCGGGGGCTTCCEEECCSSCCCCCCTT
T ss_pred CCcccccchhccCccCCEEECcCCCCCcchhhhhc--ccCCEEECCCCcccc-cchhhhcCCCCCEEECCCCcCCccCHH
Confidence 9864555 477889999999999998532 22221 799999999999995 455556899999999999999743334
Q ss_pred cccccCceeEEeccCCccCCCC
Q 036411 464 QINELSNLHFLLLRGNSLQGRI 485 (487)
Q Consensus 464 ~l~~l~~L~~L~l~~~~~~~~~ 485 (487)
.+..+++|++|++++||+.+..
T Consensus 463 ~~~~l~~L~~L~l~~N~~~c~c 484 (520)
T 2z7x_B 463 IFDRLTSLQKIWLHTNPWDCSC 484 (520)
T ss_dssp TTTTCTTCCEEECCSSCBCCCH
T ss_pred HhccCCcccEEECcCCCCcccC
Confidence 5899999999999999998753
|
| >2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=4.7e-40 Score=327.07 Aligned_cols=448 Identities=20% Similarity=0.157 Sum_probs=354.5
Q ss_pred ccccccccccEEecCCccccccccccccCCCCCcEEEccCccccCCcccccccCCCCCcEEECCCCccCCC-cchhccCC
Q 036411 2 DSFGSLKQLKILNLGFNFFIDSILPYLNTLTSLTTLNLRYNKIEGSRTKQGICNLKNLLELDLSSNNFEGH-LPQCLNNL 80 (487)
Q Consensus 2 ~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~-~~~~~~~l 80 (487)
++|.++++|++|++++|.+.+..+.+|+.+++|++|++++|.+.+ ..+..|.++++|++|++++|.+... .+..+.++
T Consensus 44 ~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~-~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l 122 (549)
T 2z81_A 44 GDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSS-LSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNL 122 (549)
T ss_dssp STTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCS-CCHHHHTTCTTCCEEECTTCCCSSSCSSCSCTTC
T ss_pred hhhhcCCcccEEECCCCCcCccChhhccccccCCEEECCCCccCc-cCHHHhccCCCCcEEECCCCcccccchhhhhhcc
Confidence 468999999999999999988888899999999999999999974 3455699999999999999999753 46678999
Q ss_pred CCccEEeccCcc-ccCCccccccCCCCCcEEeccccccCcchhHHHhhccccceEEEeccCCCccccccccccCCCCCce
Q 036411 81 THLKVLDISYNQ-LSGNFPSVLTNLTSLEYLDLSFIDFQGTFLINSLANHSKLEVLVLSSGNDMLQVKTENWLPTYPLKV 159 (487)
Q Consensus 81 ~~L~~L~l~~~~-~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~ 159 (487)
++|++|++++|. +....+..+..+++|++|++++|.+.+. ....++.+++|++++++.+.. ...+...+..+++|+.
T Consensus 123 ~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~-~~~~l~~l~~L~~L~l~~n~~-~~~~~~~~~~l~~L~~ 200 (549)
T 2z81_A 123 TNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNY-QSQSLKSIRDIHHLTLHLSES-AFLLEIFADILSSVRY 200 (549)
T ss_dssp TTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEE-CTTTTTTCSEEEEEEEECSBS-TTHHHHHHHSTTTBSE
T ss_pred CCccEEECCCCccccccCHhhhhcccccCeeeccCCccccc-ChhhhhccccCceEecccCcc-cccchhhHhhcccccE
Confidence 999999999998 4444446889999999999999998743 456788899999999977643 3333333445789999
Q ss_pred eecccccccccc----cccccCCcccEEeCCCCcccCCcchHh---hhcCCCCcEEEcccCCCCCCCCC-----CCCcCC
Q 036411 160 LQLSHCHLNVNS----SFLLHQHHLKFLDLSHNQLVGNFPTWL---LQNNTGLEVLILWNNSFSGILPR-----LPNAKY 227 (487)
Q Consensus 160 L~l~~~~~~~~~----~~~~~~~~L~~L~l~~~~~~~~~~~~~---~~~~~~L~~L~l~~~~~~~~~~~-----~~~~~~ 227 (487)
|++++|.+...+ .....+++|+.++++++.+.+..+..+ ...++.++.+.+.+|.+...... .....+
T Consensus 201 L~L~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l 280 (549)
T 2z81_A 201 LELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSEL 280 (549)
T ss_dssp EEEESCBCTTCCCCCCSSCCCCCCCCEEEEESCEEEHHHHHHHHGGGGGCTTCCEEEEESCEEECCSCCCCCTTTCCCCC
T ss_pred EEccCCccccccccccchhhhhhcccceeccccccchhHHHHHHHHhhhhccccccccccccccccccccccchhhhhhh
Confidence 999999885532 233457899999999998865444433 24578999999999876543211 123567
Q ss_pred CCCcEEEccCCcccccC----CcccccccCceEEEEccCCCCCCCcchhh-hccccCcEEecccccCCCCCch--hhhcC
Q 036411 228 DKLRHLDISTNNFSGKL----PENLGIVFQKLIYLDVSKNSFEGNIPYSI-SEMKELITLDLSRNNFSGELPR--SIFSS 300 (487)
Q Consensus 228 ~~L~~L~l~~~~~~~~~----~~~~~~~~~~L~~L~l~~~~~~~~~~~~~-~~~~~L~~L~l~~~~~~~~~~~--~~~~~ 300 (487)
++++.+.+.++.+.... ...+....++|++|++++|.+. ..+..+ ..+++|+.|++++|.+.+.++. ..++.
T Consensus 281 ~~L~~L~l~~~~i~~~~~~~~l~~~~~~~~~L~~L~l~~n~l~-~ip~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~ 359 (549)
T 2z81_A 281 GKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVF-LVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGA 359 (549)
T ss_dssp TTCCEEEEESCBCSCGGGSCCCCHHHHHSTTCCEEEEESSCCC-CCCHHHHHHCTTCCEEECCSSCCCHHHHHHHTCTTS
T ss_pred cccccccccccccchhhhcccchhhhhhcccceEEEeccCccc-cCCHHHHhcCccccEEEccCCccccccccchhhhhc
Confidence 88999999888654221 1112234578999999999987 455444 6799999999999999854543 23577
Q ss_pred CCCCcEEECCCCccCCCCC--cCCcCCCCccEEEcCCCcccccccccccCCCcccEEEccCCccCCCchhhhcccccccE
Q 036411 301 CLSLETLDLSNNNFYGQLF--PNFMNLTHLSSLRLNNNHFSGKMADGLLSSTLLDVLDVSNNKLSGDIPHWIGNFSVLWL 378 (487)
Q Consensus 301 ~~~L~~L~l~~~~~~~~~~--~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~ 378 (487)
+++|+.|++++|.+.+... ..+..+++|++|++++|.+. ..+..+..+++|++|++++|++.. ++..+ .++|++
T Consensus 360 l~~L~~L~Ls~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~~~~L~~L~Ls~N~l~~-l~~~~--~~~L~~ 435 (549)
T 2z81_A 360 WPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFH-PMPDSCQWPEKMRFLNLSSTGIRV-VKTCI--PQTLEV 435 (549)
T ss_dssp STTCCEEECTTSCCCCHHHHHHHGGGCTTCCEEECTTCCCC-CCCSCCCCCTTCCEEECTTSCCSC-CCTTS--CTTCSE
T ss_pred cccCcEEEccCCcccccccchhhhhcCCCCCEEECCCCCCc-cCChhhcccccccEEECCCCCccc-ccchh--cCCceE
Confidence 8999999999999875432 44788999999999999998 667778888999999999999873 33332 268999
Q ss_pred EecCCccccCcchhhhccCcCCcEEeccCCccccccccccCCCcceEEEeeCcccCCcchHhhhccCcceEEeCCCCccc
Q 036411 379 LLMSENYLQGSIPVQLGNLESLEFIDISENGLSVSMVSLSNLSSVKHIYLHNNAINGLIPIALLRSSTLLTLDLRDNKFF 458 (487)
Q Consensus 379 L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 458 (487)
|++++|++++. ...+++|+.|++++|+++..+. ...+++|++|++++|++++..+.++..+++|+.|++++|++.
T Consensus 436 L~Ls~N~l~~~----~~~l~~L~~L~Ls~N~l~~ip~-~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~~~ 510 (549)
T 2z81_A 436 LDVSNNNLDSF----SLFLPRLQELYISRNKLKTLPD-ASLFPVLLVMKISRNQLKSVPDGIFDRLTSLQKIWLHTNPWD 510 (549)
T ss_dssp EECCSSCCSCC----CCCCTTCCEEECCSSCCSSCCC-GGGCTTCCEEECCSSCCCCCCTTGGGGCTTCCEEECCSSCBC
T ss_pred EECCCCChhhh----cccCChhcEEECCCCccCcCCC-cccCccCCEEecCCCccCCcCHHHHhcCcccCEEEecCCCcc
Confidence 99999998853 2578999999999999985544 567899999999999999998888999999999999999987
Q ss_pred ccCc
Q 036411 459 GRIP 462 (487)
Q Consensus 459 ~~~~ 462 (487)
+..+
T Consensus 511 ~~~~ 514 (549)
T 2z81_A 511 CSCP 514 (549)
T ss_dssp CCHH
T ss_pred CCCc
Confidence 6554
|
| >4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} | Back alignment and structure |
|---|
Probab=100.00 E-value=8.1e-40 Score=328.60 Aligned_cols=415 Identities=18% Similarity=0.203 Sum_probs=266.0
Q ss_pred ccccEEecCCccccccccccccCCCCCcEEEccCccccCCc---c-----------------------------cccc--
Q 036411 8 KQLKILNLGFNFFIDSILPYLNTLTSLTTLNLRYNKIEGSR---T-----------------------------KQGI-- 53 (487)
Q Consensus 8 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~---~-----------------------------~~~~-- 53 (487)
.+++.|+|+++.+.+.+|..++.+++|++|++++|.+.... . +..+
T Consensus 81 ~~V~~L~L~~~~l~g~lp~~l~~L~~L~~L~Ls~N~~~~~~~~~~~~~~~~~~~~~~~~~l~l~l~~~~l~~~~~~~~~~ 160 (636)
T 4eco_A 81 GRVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQKQKMRMHYQKTFVDYDPREDFSD 160 (636)
T ss_dssp CCEEEEECTTSCCEEEECGGGGGCTTCCEEESCCGGGGGTCCSBSTTSBCTTCCHHHHHHHHTHHHHHHTCCCGGGGSCH
T ss_pred CCEEEEEecCcccCCcCChHHhcCccceEEECcCCccccCCccccccccccCchHHHHHHHHhhHHHhhhccCchhhHHH
Confidence 47999999999999999999999999999999999651000 0 0000
Q ss_pred -----------------cCCCCCcEEECC--CCccCCCcchhccCCCCccEEeccCccccCC-----------------c
Q 036411 54 -----------------CNLKNLLELDLS--SNNFEGHLPQCLNNLTHLKVLDISYNQLSGN-----------------F 97 (487)
Q Consensus 54 -----------------~~~~~L~~L~l~--~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~-----------------~ 97 (487)
.....++.+.+. .+.++. +|..++++++|++|++++|.++.. +
T Consensus 161 ~~~~l~~~~l~~~~~~~~~~~~l~~l~l~~~~n~l~~-ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~i 239 (636)
T 4eco_A 161 LIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNITF-VSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYK 239 (636)
T ss_dssp HHHHHHHHCTTSCCCCCCCCCCCCTTTTTCCSCEEEE-ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHT
T ss_pred HHHHHhhcCccccccccccccchhhhhhccccCCCcc-CCHHHhcccCCCEEECcCCccccccccccccccccchhcccC
Confidence 001122222222 344553 666677777777777777776643 6
Q ss_pred ccccc--CCCCCcEEeccccccCcchhHHHhhccccceEEEeccCCCccc-ccccccc------CCCCCceeeccccccc
Q 036411 98 PSVLT--NLTSLEYLDLSFIDFQGTFLINSLANHSKLEVLVLSSGNDMLQ-VKTENWL------PTYPLKVLQLSHCHLN 168 (487)
Q Consensus 98 ~~~~~--~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~-~~~~~~~------~~~~L~~L~l~~~~~~ 168 (487)
|..+. ++++|++|++++|.+.+.. +..+..+++|++|+++.+..+.. ..+..+. .+++|++|++++|.++
T Consensus 240 p~~l~~~~l~~L~~L~L~~n~l~~~~-p~~l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~ 318 (636)
T 4eco_A 240 TEDLKWDNLKDLTDVEVYNCPNLTKL-PTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLK 318 (636)
T ss_dssp TSCCCGGGCTTCCEEEEECCTTCSSC-CTTTTTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCS
T ss_pred chhhhhcccCCCCEEEecCCcCCccC-hHHHhcCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCC
Confidence 66666 7777777777777665433 25566667777777766542322 1111122 2367777777777777
Q ss_pred cccc--ccccCCcccEEeCCCCcccCCcchHhhhcCCCCcEEEcccCCCCCCCCCCCCcCCCC-CcEEEccCCcccccCC
Q 036411 169 VNSS--FLLHQHHLKFLDLSHNQLVGNFPTWLLQNNTGLEVLILWNNSFSGILPRLPNAKYDK-LRHLDISTNNFSGKLP 245 (487)
Q Consensus 169 ~~~~--~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~-L~~L~l~~~~~~~~~~ 245 (487)
.++. .+..+++|+.|++++|.+.+.++ .+..+++|+.|++++|.+... +. .+..+++ |+.|++++|.+. .+|
T Consensus 319 ~ip~~~~l~~l~~L~~L~L~~N~l~g~ip--~~~~l~~L~~L~L~~N~l~~l-p~-~l~~l~~~L~~L~Ls~N~l~-~lp 393 (636)
T 4eco_A 319 TFPVETSLQKMKKLGMLECLYNQLEGKLP--AFGSEIKLASLNLAYNQITEI-PA-NFCGFTEQVENLSFAHNKLK-YIP 393 (636)
T ss_dssp SCCCHHHHTTCTTCCEEECCSCCCEEECC--CCEEEEEESEEECCSSEEEEC-CT-TSEEECTTCCEEECCSSCCS-SCC
T ss_pred ccCchhhhccCCCCCEEeCcCCcCccchh--hhCCCCCCCEEECCCCccccc-cH-hhhhhcccCcEEEccCCcCc-ccc
Confidence 6666 67777788888888877765666 345677777888777776633 22 2466677 888888888777 566
Q ss_pred cccccc-cCceEEEEccCCCCCCCcchhhh-------ccccCcEEecccccCCCCCchhhhcCCCCCcEEECCCCccCCC
Q 036411 246 ENLGIV-FQKLIYLDVSKNSFEGNIPYSIS-------EMKELITLDLSRNNFSGELPRSIFSSCLSLETLDLSNNNFYGQ 317 (487)
Q Consensus 246 ~~~~~~-~~~L~~L~l~~~~~~~~~~~~~~-------~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~ 317 (487)
..+... +++|++|++++|.+.+..+..+. .+++|+.|++++|.+. .+|...|..+++|+.|++++|.+...
T Consensus 394 ~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~-~lp~~~~~~l~~L~~L~Ls~N~l~~i 472 (636)
T 4eco_A 394 NIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQIS-KFPKELFSTGSPLSSINLMGNMLTEI 472 (636)
T ss_dssp SCCCTTCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECCSSCCC-SCCTHHHHTTCCCSEEECCSSCCSBC
T ss_pred hhhhhcccCccCEEECcCCcCCCcchhhhcccccccccCCCCCEEECcCCccC-cCCHHHHccCCCCCEEECCCCCCCCc
Confidence 554322 24788888888888766666665 6678888888888887 78877777788888888888887633
Q ss_pred CCcCCcCC-------CCccEEEcCCCccccccccccc--CCCcccEEEccCCccCCCchhhhcccccccEEecC------
Q 036411 318 LFPNFMNL-------THLSSLRLNNNHFSGKMADGLL--SSTLLDVLDVSNNKLSGDIPHWIGNFSVLWLLLMS------ 382 (487)
Q Consensus 318 ~~~~~~~~-------~~L~~L~l~~~~~~~~~~~~~~--~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~------ 382 (487)
....+... ++|+.|++++|.++ ..+..+. .+++|+.|++++|++++ +|..+..+++|++|+++
T Consensus 473 ~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~-ip~~~~~l~~L~~L~Ls~N~~ls 550 (636)
T 4eco_A 473 PKNSLKDENENFKNTYLLTSIDLRFNKLT-KLSDDFRATTLPYLVGIDLSYNSFSK-FPTQPLNSSTLKGFGIRNQRDAQ 550 (636)
T ss_dssp CSSSSEETTEECTTGGGCCEEECCSSCCC-BCCGGGSTTTCTTCCEEECCSSCCSS-CCCGGGGCSSCCEEECCSCBCTT
T ss_pred CHHHhccccccccccCCccEEECcCCcCC-ccChhhhhccCCCcCEEECCCCCCCC-cChhhhcCCCCCEEECCCCcccc
Confidence 33233222 26777777777766 4444444 66677777777777664 56666667777777763
Q ss_pred CccccCcchhhhccCcCCcEEeccCCccccccccccCCCcceEEEeeCcccC
Q 036411 383 ENYLQGSIPVQLGNLESLEFIDISENGLSVSMVSLSNLSSVKHIYLHNNAIN 434 (487)
Q Consensus 383 ~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 434 (487)
+|.+.+..|..+..+++|+.|++++|++...+..+. ++|+.|++++|++.
T Consensus 551 ~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~ip~~~~--~~L~~L~Ls~N~l~ 600 (636)
T 4eco_A 551 GNRTLREWPEGITLCPSLTQLQIGSNDIRKVNEKIT--PNISVLDIKDNPNI 600 (636)
T ss_dssp CCBCCCCCCTTGGGCSSCCEEECCSSCCCBCCSCCC--TTCCEEECCSCTTC
T ss_pred cCcccccChHHHhcCCCCCEEECCCCcCCccCHhHh--CcCCEEECcCCCCc
Confidence 344455555556666666666666666543333332 55555555555544
|
| >2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.8e-39 Score=320.34 Aligned_cols=437 Identities=20% Similarity=0.171 Sum_probs=345.9
Q ss_pred ccccEEecCCccccccccccccCCCCCcEEEccCccccCCcccccccCCCCCcEEECCCCccCCCcchhccCCCCccEEe
Q 036411 8 KQLKILNLGFNFFIDSILPYLNTLTSLTTLNLRYNKIEGSRTKQGICNLKNLLELDLSSNNFEGHLPQCLNNLTHLKVLD 87 (487)
Q Consensus 8 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~ 87 (487)
++|++|++++|.+.+..+.+++.+++|++|++++|.+.+ ..+..|.++++|++|++++|.+. .+|.. .+++|++|+
T Consensus 21 ~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~-~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~--~l~~L~~L~ 96 (520)
T 2z7x_B 21 QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQY-LDISVFKFNQELEYLDLSHNKLV-KISCH--PTVNLKHLD 96 (520)
T ss_dssp TTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCCE-EEGGGGTTCTTCCEEECCSSCCC-EEECC--CCCCCSEEE
T ss_pred ccccEEECCCCcccccChhhccccccccEEecCCCccCC-cChHHhhcccCCCEEecCCCcee-ecCcc--ccCCccEEe
Confidence 789999999999988888899999999999999999874 34578999999999999999998 56665 899999999
Q ss_pred ccCccccC-CccccccCCCCCcEEeccccccCcchhHHHhhccccc--eEEEeccCCCc-cccccccccCCC-CCceeec
Q 036411 88 ISYNQLSG-NFPSVLTNLTSLEYLDLSFIDFQGTFLINSLANHSKL--EVLVLSSGNDM-LQVKTENWLPTY-PLKVLQL 162 (487)
Q Consensus 88 l~~~~~~~-~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L--~~l~l~~~~~~-~~~~~~~~~~~~-~L~~L~l 162 (487)
+++|.++. ..|..+..+++|++|++++|.+.+ ..+..+++| +.++++++... .......+..+. ....+++
T Consensus 97 L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~----~~~~~l~~L~L~~L~l~~n~l~~~~~~~~~l~~l~~~~l~l~l 172 (520)
T 2z7x_B 97 LSFNAFDALPICKEFGNMSQLKFLGLSTTHLEK----SSVLPIAHLNISKVLLVLGETYGEKEDPEGLQDFNTESLHIVF 172 (520)
T ss_dssp CCSSCCSSCCCCGGGGGCTTCCEEEEEESSCCG----GGGGGGTTSCEEEEEEEECTTTTSSCCTTTTTTCCEEEEEEEC
T ss_pred ccCCccccccchhhhccCCcceEEEecCcccch----hhccccccceeeEEEeecccccccccccccccccccceEEEEe
Confidence 99999986 467899999999999999999875 356778888 99999876541 122222233322 2335666
Q ss_pred ccccc--cccccccccCCcccEEeCCCCc-------ccCCcchHhhhcCCCCcEEEcccCCCCCCCCCC--CCcCCCCCc
Q 036411 163 SHCHL--NVNSSFLLHQHHLKFLDLSHNQ-------LVGNFPTWLLQNNTGLEVLILWNNSFSGILPRL--PNAKYDKLR 231 (487)
Q Consensus 163 ~~~~~--~~~~~~~~~~~~L~~L~l~~~~-------~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~--~~~~~~~L~ 231 (487)
.++.+ ......+..+++|+.+++++|. +.+.++ .+..++.|+.+.+.++.+....... .....++|+
T Consensus 173 ~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~--~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~L~ 250 (520)
T 2z7x_B 173 PTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILA--KLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVW 250 (520)
T ss_dssp CSSSCCCCCCCCCCTTCSEEEECCEEECCSTTTTHHHHHHHH--GGGGCTTCCEEEEEEEEEEHHHHHHHHHHHHTSSCS
T ss_pred ccCcchhhhhhhhhhcccceeeccccccccccccceeecchh--hhccccchhhccccccccCHHHHHHHHHHhhhCccc
Confidence 66665 2334456678999999998886 333332 3457899999999887654211000 001235899
Q ss_pred EEEccCCcccccCCcccc----cccCceEEEEccCCCCCCCcchhhhcc---ccCcEEecccccCCCCCchhhhcCCCCC
Q 036411 232 HLDISTNNFSGKLPENLG----IVFQKLIYLDVSKNSFEGNIPYSISEM---KELITLDLSRNNFSGELPRSIFSSCLSL 304 (487)
Q Consensus 232 ~L~l~~~~~~~~~~~~~~----~~~~~L~~L~l~~~~~~~~~~~~~~~~---~~L~~L~l~~~~~~~~~~~~~~~~~~~L 304 (487)
.|++++|.+.+.+|..++ ..+++|+.++++++.+. .....+..+ ++|+.|++++|.+. ..+. +..+++|
T Consensus 251 ~L~l~~n~l~~~~p~~~~~~~~~~l~~L~~l~l~~n~~~-~p~~~~~~~~~~~~L~~L~l~~n~l~-~~~~--~~~l~~L 326 (520)
T 2z7x_B 251 YFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVFG-FPQSYIYEIFSNMNIKNFTVSGTRMV-HMLC--PSKISPF 326 (520)
T ss_dssp EEEEEEEEEESCCCCCCCCCCSCCCCEEEEEEEEECCCC-SCTHHHHHHHHTCCCSEEEEESSCCC-CCCC--CSSCCCC
T ss_pred EEEeecccccCccccchhhcccccCceeEecccccccee-cchhhhhcccccCceeEEEcCCCccc-cccc--hhhCCcc
Confidence 999999998877777663 45689999999999882 222344433 67999999999986 4432 2678999
Q ss_pred cEEECCCCccCCCCCcCCcCCCCccEEEcCCCcccc--cccccccCCCcccEEEccCCccCCCchh-hhcccccccEEec
Q 036411 305 ETLDLSNNNFYGQLFPNFMNLTHLSSLRLNNNHFSG--KMADGLLSSTLLDVLDVSNNKLSGDIPH-WIGNFSVLWLLLM 381 (487)
Q Consensus 305 ~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~--~~~~~~~~~~~L~~L~l~~~~~~~~~~~-~~~~~~~L~~L~l 381 (487)
++|++++|.+.+..+..+..+++|+.|++++|.+.+ ..+..+..+++|++|++++|++.+.+|. .+..+++|++|++
T Consensus 327 ~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~~l~~L~~L~L 406 (520)
T 2z7x_B 327 LHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNM 406 (520)
T ss_dssp CEEECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGCSCCCCTTCCEEEC
T ss_pred cEEEeECCccChhhhhhhccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCcccccchhccCccCCEEEC
Confidence 999999999988788889999999999999999985 4456788899999999999999875665 4888999999999
Q ss_pred CCccccCcchhhhccCcCCcEEeccCCccccccccccCCCcceEEEeeCcccCCcchHhhhccCcceEEeCCCCccccc
Q 036411 382 SENYLQGSIPVQLGNLESLEFIDISENGLSVSMVSLSNLSSVKHIYLHNNAINGLIPIALLRSSTLLTLDLRDNKFFGR 460 (487)
Q Consensus 382 ~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~ 460 (487)
++|.+++..+..+. ++|+.|++++|+++..+..+..+++|++|++++|+++...+..+..+++|+.|++++|++.+.
T Consensus 407 s~N~l~~~~~~~l~--~~L~~L~Ls~N~l~~ip~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~l~~N~~~c~ 483 (520)
T 2z7x_B 407 SSNILTDTIFRCLP--PRIKVLDLHSNKIKSIPKQVVKLEALQELNVASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCS 483 (520)
T ss_dssp CSSCCCGGGGGSCC--TTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCBCCC
T ss_pred cCCCCCcchhhhhc--ccCCEEECCCCcccccchhhhcCCCCCEEECCCCcCCccCHHHhccCCcccEEECcCCCCccc
Confidence 99999866666554 799999999999987777778999999999999999977666688999999999999998653
|
| >4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=100.00 E-value=7.9e-39 Score=326.29 Aligned_cols=437 Identities=18% Similarity=0.164 Sum_probs=330.0
Q ss_pred ccccEEecCCccccccccccccCCCCCcEEEc-cCccccCCcccccc---------------------------------
Q 036411 8 KQLKILNLGFNFFIDSILPYLNTLTSLTTLNL-RYNKIEGSRTKQGI--------------------------------- 53 (487)
Q Consensus 8 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l-~~~~~~~~~~~~~~--------------------------------- 53 (487)
.+++.|+|+++.+.+.+|+.++.+++|++|++ +++.+.+.......
T Consensus 323 ~~V~~L~Ls~~~L~G~ip~~l~~L~~L~~LdLss~N~lsG~~~~~~~~~~~~l~~~~l~~lr~~~~~~~l~~~~~~~~s~ 402 (876)
T 4ecn_A 323 GRVTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSD 402 (876)
T ss_dssp SCEEEEECTTTCCEEEECGGGGGCTTCCEEESCCTTHHHHTTCBTTBCCCSSCCHHHHHHHHTHHHHHHTCCCGGGGSCH
T ss_pred CCEEEEECccCCCCCcCchHHhccccceEeeecccccccccccccccccccccchhHHHHHHHhhhhhhhccCcchhhhH
Confidence 57999999999999999999999999999999 77765433111100
Q ss_pred -----------------cCCCCCcEEECCC--CccCCCcchhccCCCCccEEeccCccccC-----------------Cc
Q 036411 54 -----------------CNLKNLLELDLSS--NNFEGHLPQCLNNLTHLKVLDISYNQLSG-----------------NF 97 (487)
Q Consensus 54 -----------------~~~~~L~~L~l~~--~~~~~~~~~~~~~l~~L~~L~l~~~~~~~-----------------~~ 97 (487)
.....++.+.+.. |.+.. +|..+.++++|++|++++|.++. .+
T Consensus 403 l~~~~l~~~~~~~~i~~~~~l~l~~l~l~~~~N~L~~-IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~i 481 (876)
T 4ecn_A 403 LLQDAINRNPEMKPIKKDSRISLKDTQIGNLTNRITF-ISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYE 481 (876)
T ss_dssp HHHHHHHTCTTSCCCCCCCCCCCCTTTTTCCSCEEEE-ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHT
T ss_pred HHHHHhhhCccccccccccccchhhceeccccCcccc-hhHHHhcCCCCCEEECcCCcCCCCcccccccccccccccccC
Confidence 1112233333333 45553 77788888888888888888875 26
Q ss_pred ccccc--CCCCCcEEeccccccCcchhHHHhhccccceEEEeccCCCccc--ccc------ccccCCCCCceeecccccc
Q 036411 98 PSVLT--NLTSLEYLDLSFIDFQGTFLINSLANHSKLEVLVLSSGNDMLQ--VKT------ENWLPTYPLKVLQLSHCHL 167 (487)
Q Consensus 98 ~~~~~--~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~--~~~------~~~~~~~~L~~L~l~~~~~ 167 (487)
|..+. ++++|++|++++|.+.+..+ ..+..+++|+.|+++++..+.. ++. ..+...++|+.|++++|.+
T Consensus 482 P~~l~f~~L~~L~~L~Ls~N~l~~~iP-~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L 560 (876)
T 4ecn_A 482 NEELSWSNLKDLTDVELYNCPNMTQLP-DFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNL 560 (876)
T ss_dssp TSCCCGGGCTTCCEEEEESCTTCCSCC-GGGGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCC
T ss_pred ChhhhhccCCCCCEEECcCCCCCccCh-HHHhCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcC
Confidence 77766 88888888888888765543 6788888888888887753332 222 1344566899999999999
Q ss_pred ccccc--ccccCCcccEEeCCCCcccCCcchHhhhcCCCCcEEEcccCCCCCCCCCCCCcCCCC-CcEEEccCCcccccC
Q 036411 168 NVNSS--FLLHQHHLKFLDLSHNQLVGNFPTWLLQNNTGLEVLILWNNSFSGILPRLPNAKYDK-LRHLDISTNNFSGKL 244 (487)
Q Consensus 168 ~~~~~--~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~-L~~L~l~~~~~~~~~ 244 (487)
..++. .+..+++|+.|++++|.+. .++ .+..+++|+.|++++|.+.. .+. .+..+++ |+.|++++|.+. .+
T Consensus 561 ~~ip~~~~l~~L~~L~~L~Ls~N~l~-~lp--~~~~L~~L~~L~Ls~N~l~~-lp~-~l~~l~~~L~~L~Ls~N~L~-~l 634 (876)
T 4ecn_A 561 EEFPASASLQKMVKLGLLDCVHNKVR-HLE--AFGTNVKLTDLKLDYNQIEE-IPE-DFCAFTDQVEGLGFSHNKLK-YI 634 (876)
T ss_dssp CBCCCHHHHTTCTTCCEEECTTSCCC-BCC--CCCTTSEESEEECCSSCCSC-CCT-TSCEECTTCCEEECCSSCCC-SC
T ss_pred CccCChhhhhcCCCCCEEECCCCCcc-cch--hhcCCCcceEEECcCCcccc-chH-HHhhccccCCEEECcCCCCC-cC
Confidence 88887 8889999999999999987 677 46688999999999999883 333 3477788 999999999988 67
Q ss_pred Ccccccc-cCceEEEEccCCCCCCCcch---hhh--ccccCcEEecccccCCCCCchhhhcCCCCCcEEECCCCccCCCC
Q 036411 245 PENLGIV-FQKLIYLDVSKNSFEGNIPY---SIS--EMKELITLDLSRNNFSGELPRSIFSSCLSLETLDLSNNNFYGQL 318 (487)
Q Consensus 245 ~~~~~~~-~~~L~~L~l~~~~~~~~~~~---~~~--~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~ 318 (487)
|..+... .++|+.|++++|.+.+..+. .+. ..++|+.|++++|.+. .+|...+..+++|+.|++++|.+....
T Consensus 635 p~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L~-~lp~~~~~~l~~L~~L~Ls~N~L~~ip 713 (876)
T 4ecn_A 635 PNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQ-KFPTELFATGSPISTIILSNNLMTSIP 713 (876)
T ss_dssp CSCCCTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSSCCC-SCCHHHHHTTCCCSEEECCSCCCSCCC
T ss_pred chhhhccccCCCCEEECcCCcCCCccccchhhhccccCCCcCEEEccCCcCC-ccCHHHHccCCCCCEEECCCCcCCccC
Confidence 7655432 23599999999998764432 122 3458999999999998 899988888999999999999987433
Q ss_pred CcCCc-------CCCCccEEEcCCCccccccccccc--CCCcccEEEccCCccCCCchhhhcccccccEEecCC------
Q 036411 319 FPNFM-------NLTHLSSLRLNNNHFSGKMADGLL--SSTLLDVLDVSNNKLSGDIPHWIGNFSVLWLLLMSE------ 383 (487)
Q Consensus 319 ~~~~~-------~~~~L~~L~l~~~~~~~~~~~~~~--~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~------ 383 (487)
...+. ++++|+.|++++|.+. ..+..+. .+++|+.|++++|++++ +|..+..+++|+.|++++
T Consensus 714 ~~~~~~~~~~l~nl~~L~~L~Ls~N~L~-~lp~~l~~~~l~~L~~L~Ls~N~L~~-lp~~l~~L~~L~~L~Ls~N~~ls~ 791 (876)
T 4ecn_A 714 ENSLKPKDGNYKNTYLLTTIDLRFNKLT-SLSDDFRATTLPYLSNMDVSYNCFSS-FPTQPLNSSQLKAFGIRHQRDAEG 791 (876)
T ss_dssp TTSSSCTTSCCTTGGGCCEEECCSSCCC-CCCGGGSTTTCTTCCEEECCSSCCSS-CCCGGGGCTTCCEEECCCCBCTTC
T ss_pred hHHhccccccccccCCccEEECCCCCCc-cchHHhhhccCCCcCEEEeCCCCCCc-cchhhhcCCCCCEEECCCCCCccc
Confidence 33332 2338999999999998 6666666 89999999999999986 788899999999999976
Q ss_pred ccccCcchhhhccCcCCcEEeccCCccccccccccCCCcceEEEeeCcccCCcchHhhhccCcceEEeCCCCcc
Q 036411 384 NYLQGSIPVQLGNLESLEFIDISENGLSVSMVSLSNLSSVKHIYLHNNAINGLIPIALLRSSTLLTLDLRDNKF 457 (487)
Q Consensus 384 ~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 457 (487)
|.+.+..|..+..+++|+.|++++|++...+..+. ++|+.|++++|++....+..+.....+..+.|.+++.
T Consensus 792 N~l~~~ip~~l~~L~~L~~L~Ls~N~L~~Ip~~l~--~~L~~LdLs~N~l~~i~~~~~~~~~~~~~~~L~~n~~ 863 (876)
T 4ecn_A 792 NRILRQWPTGITTCPSLIQLQIGSNDIRKVDEKLT--PQLYILDIADNPNISIDVTSVCPYIEAGMYVLLYDKT 863 (876)
T ss_dssp CBCCCCCCTTGGGCSSCCEEECCSSCCCBCCSCCC--SSSCEEECCSCTTCEEECGGGHHHHHTTCCEEECCTT
T ss_pred ccccccChHHHhcCCCCCEEECCCCCCCccCHhhc--CCCCEEECCCCCCCccChHHccccccchheeecCCCc
Confidence 66666778888888888888888888865555543 6888888888887766555554444455555555554
|
| >4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=7.4e-38 Score=317.30 Aligned_cols=470 Identities=22% Similarity=0.183 Sum_probs=334.4
Q ss_pred cccEEecCCccccccccccccCCCCCcEEEccCccccCCcccccccCCCCCcEEECCCCccCCCcchhccCCCCccEEec
Q 036411 9 QLKILNLGFNFFIDSILPYLNTLTSLTTLNLRYNKIEGSRTKQGICNLKNLLELDLSSNNFEGHLPQCLNNLTHLKVLDI 88 (487)
Q Consensus 9 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l 88 (487)
++++|+|++|.+.+..+.+|+.+++|++|++++|.+.+ +.+++|+++++|++|++++|++....+..|.++++|++|++
T Consensus 53 ~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~-i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~~L~~L~~L~L 131 (635)
T 4g8a_A 53 STKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQT-IEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVA 131 (635)
T ss_dssp TCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCE-ECTTTTTTCTTCCEEECTTCCCCEECGGGGTTCTTCCEEEC
T ss_pred CCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCCC-cChhHhcCCCCCCEEEccCCcCCCCCHHHhcCCCCCCEEEC
Confidence 78999999999988888899999999999999999873 45678999999999999999998666678999999999999
Q ss_pred cCccccCCccccccCCCCCcEEeccccccCcchhHHHhhccccceEEEeccCCCccccccccccCCC----CCceeeccc
Q 036411 89 SYNQLSGNFPSVLTNLTSLEYLDLSFIDFQGTFLINSLANHSKLEVLVLSSGNDMLQVKTENWLPTY----PLKVLQLSH 164 (487)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~----~L~~L~l~~ 164 (487)
++|.++...+..|.++++|++|++++|.+........++.+++|++|+++++. +..+....+.... ....++++.
T Consensus 132 s~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~l~~L~~l~~~~~~~~ls~ 210 (635)
T 4g8a_A 132 VETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNK-IQSIYCTDLRVLHQMPLLNLSLDLSL 210 (635)
T ss_dssp TTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSC-CCEECGGGGHHHHTCTTCCCEEECTT
T ss_pred CCCcCCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCcc-ccccccccccchhhhhhhhhhhhccc
Confidence 99999877777899999999999999998766667788999999999997753 3333333333222 233566666
Q ss_pred ccccccccccccCCcccEEeCCCCcccCCcchHhhhcCCCCcEEEcccCCCC----------------------------
Q 036411 165 CHLNVNSSFLLHQHHLKFLDLSHNQLVGNFPTWLLQNNTGLEVLILWNNSFS---------------------------- 216 (487)
Q Consensus 165 ~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~---------------------------- 216 (487)
+.+...+........+..+++.++..........+..+..++...+......
T Consensus 211 n~l~~i~~~~~~~~~~~~l~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~~~~l~~~~l~~~~ 290 (635)
T 4g8a_A 211 NPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAY 290 (635)
T ss_dssp CCCCEECTTTTTTCEEEEEEEESCCSSHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCTTTTGGGGGSEEEEEEEEC
T ss_pred CcccccCcccccchhhhhhhhhcccccccccchhhcCCcccccccccccccccccccccccccccccccchhhhhhhhhh
Confidence 6665544444444455566665554322222333333444433322111000
Q ss_pred --CC--CCCCCCcCCCCCcEEEccCCcccccCCccc------------------ccccCceEEEEccCCCCCCCcchhhh
Q 036411 217 --GI--LPRLPNAKYDKLRHLDISTNNFSGKLPENL------------------GIVFQKLIYLDVSKNSFEGNIPYSIS 274 (487)
Q Consensus 217 --~~--~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~------------------~~~~~~L~~L~l~~~~~~~~~~~~~~ 274 (487)
.. .....+....+++.+.+..+.+........ ...++.++.+.+.++..... ....
T Consensus 291 ~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~L~~l~l~~n~~~~~--~~~~ 368 (635)
T 4g8a_A 291 LDYYLDGIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNA--FSEV 368 (635)
T ss_dssp CCSCEEECTTTTGGGTTCSEEEEESCEEEECGGGGSCCCCSEEEEESCEESSCCCCBCTTCCEEEEESCCSCCB--CCCC
T ss_pred hcccccchhhhhhhhcccccccccccccccccccccchhhhhhhcccccccCcCcccchhhhhcccccccCCCC--cccc
Confidence 00 000011222334444443333221100000 00123444455544443321 1233
Q ss_pred ccccCcEEecccccCCCC--CchhhhcCCCCCcEEECCCCccCCCCCcCCcCCCCccEEEcCCCccccc-ccccccCCCc
Q 036411 275 EMKELITLDLSRNNFSGE--LPRSIFSSCLSLETLDLSNNNFYGQLFPNFMNLTHLSSLRLNNNHFSGK-MADGLLSSTL 351 (487)
Q Consensus 275 ~~~~L~~L~l~~~~~~~~--~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~-~~~~~~~~~~ 351 (487)
.+++|+.+++++|.+... .+. .+..+.+|+.+++..+.... ....+..+++|+.+++.++..... ....+..+.+
T Consensus 369 ~l~~L~~L~ls~n~l~~~~~~~~-~~~~~~~L~~L~~~~~~~~~-~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~l~~ 446 (635)
T 4g8a_A 369 DLPSLEFLDLSRNGLSFKGCCSQ-SDFGTISLKYLDLSFNGVIT-MSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRN 446 (635)
T ss_dssp BCTTCCEEECCSSCCBEEEECCH-HHHSCSCCCEEECCSCSEEE-ECSCCTTCTTCCEEECTTSEEESTTSSCTTTTCTT
T ss_pred cccccccchhhcccccccccccc-chhhhhhhhhhhcccccccc-ccccccccccccchhhhhccccccccccccccccc
Confidence 567888888888776411 222 23457788888888776543 344567889999999988876533 3355678889
Q ss_pred ccEEEccCCccCCCchhhhcccccccEEecCCcccc-CcchhhhccCcCCcEEeccCCccccc-cccccCCCcceEEEee
Q 036411 352 LDVLDVSNNKLSGDIPHWIGNFSVLWLLLMSENYLQ-GSIPVQLGNLESLEFIDISENGLSVS-MVSLSNLSSVKHIYLH 429 (487)
Q Consensus 352 L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~-~~~~~~~~~~~~L~~l~l~~~~~~~~-~~~~~~~~~L~~L~l~ 429 (487)
++.++++.|.+....+..+..++.++.|++++|... ...|..+..+++|+.|++++|+++.. +..+..+++|++|+++
T Consensus 447 l~~l~ls~n~l~~~~~~~~~~~~~L~~L~Ls~N~~~~~~~~~~~~~l~~L~~L~Ls~N~L~~l~~~~f~~l~~L~~L~Ls 526 (635)
T 4g8a_A 447 LIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMS 526 (635)
T ss_dssp CCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECT
T ss_pred cccccccccccccccccccccchhhhhhhhhhcccccccCchhhhhccccCEEECCCCccCCcChHHHcCCCCCCEEECC
Confidence 999999999998888888999999999999999754 35677889999999999999999755 5567799999999999
Q ss_pred CcccCCcchHhhhccCcceEEeCCCCcccccCccccccc-CceeEEeccCCccCCC
Q 036411 430 NNAINGLIPIALLRSSTLLTLDLRDNKFFGRIPHQINEL-SNLHFLLLRGNSLQGR 484 (487)
Q Consensus 430 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l-~~L~~L~l~~~~~~~~ 484 (487)
+|++++..+.++..+++|+.|++++|++++..|..+.++ ++|+.|++++||+.+.
T Consensus 527 ~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~~L~~L~L~~Np~~C~ 582 (635)
T 4g8a_A 527 HNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACT 582 (635)
T ss_dssp TSCCCBCCCGGGTTCTTCCEEECTTSCCCBCCSSCTTCCCTTCCEEECTTCCBCCS
T ss_pred CCcCCCCChhHHhCCCCCCEEECCCCcCCCCCHHHHHhhhCcCCEEEeeCCCCccc
Confidence 999999989999999999999999999999999999998 5899999999998763
|
| >4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-38 Score=319.40 Aligned_cols=430 Identities=20% Similarity=0.232 Sum_probs=266.6
Q ss_pred CCCcEEEccCccccCCcccccccCCCCCcEEECCCCccC------C---------------------------Ccchhcc
Q 036411 32 TSLTTLNLRYNKIEGSRTKQGICNLKNLLELDLSSNNFE------G---------------------------HLPQCLN 78 (487)
Q Consensus 32 ~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~------~---------------------------~~~~~~~ 78 (487)
.+++.|+++++.+.+..+ ..++++++|++|++++|.+. . ..+..+.
T Consensus 81 ~~V~~L~L~~~~l~g~lp-~~l~~L~~L~~L~Ls~N~~~~~~~~~~~~~~~~~~~~~~~~~l~l~l~~~~l~~~~~~~~~ 159 (636)
T 4eco_A 81 GRVTGLSLEGFGASGRVP-DAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQKQKMRMHYQKTFVDYDPREDFS 159 (636)
T ss_dssp CCEEEEECTTSCCEEEEC-GGGGGCTTCCEEESCCGGGGGTCCSBSTTSBCTTCCHHHHHHHHTHHHHHHTCCCGGGGSC
T ss_pred CCEEEEEecCcccCCcCC-hHHhcCccceEEECcCCccccCCccccccccccCchHHHHHHHHhhHHHhhhccCchhhHH
Confidence 489999999999876554 67999999999999999651 0 0000000
Q ss_pred -------------------CCCCccEEecc--CccccCCccccccCCCCCcEEeccccccCcchhHHHhhccccceEEEe
Q 036411 79 -------------------NLTHLKVLDIS--YNQLSGNFPSVLTNLTSLEYLDLSFIDFQGTFLINSLANHSKLEVLVL 137 (487)
Q Consensus 79 -------------------~l~~L~~L~l~--~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~l~l 137 (487)
....++.+.+. .|.++. +|..+.++++|++|++++|.+.+...... ..+.
T Consensus 160 ~~~~~l~~~~l~~~~~~~~~~~~l~~l~l~~~~n~l~~-ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~--~~~~------ 230 (636)
T 4eco_A 160 DLIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNITF-VSKAVMRLTKLRQFYMGNSPFVAENICEA--WENE------ 230 (636)
T ss_dssp HHHHHHHHHCTTSCCCCCCCCCCCCTTTTTCCSCEEEE-ECGGGGGCTTCCEEEEESCCCCGGGBSSS--CSCT------
T ss_pred HHHHHHhhcCccccccccccccchhhhhhccccCCCcc-CCHHHhcccCCCEEECcCCcccccccccc--cccc------
Confidence 01122222222 456665 88899999999999999999876310000 0000
Q ss_pred ccCCCcccccccccc--CCCCCceeecccccc-cccccccccCCcccEEeCCCCc-ccC-CcchHhhh-----cCCCCcE
Q 036411 138 SSGNDMLQVKTENWL--PTYPLKVLQLSHCHL-NVNSSFLLHQHHLKFLDLSHNQ-LVG-NFPTWLLQ-----NNTGLEV 207 (487)
Q Consensus 138 ~~~~~~~~~~~~~~~--~~~~L~~L~l~~~~~-~~~~~~~~~~~~L~~L~l~~~~-~~~-~~~~~~~~-----~~~~L~~ 207 (487)
.........+..+. .+++|++|++++|.+ ..++..+..+++|+.|++++|. +++ .+|..+.. .+++|++
T Consensus 231 -~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~ 309 (636)
T 4eco_A 231 -NSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQI 309 (636)
T ss_dssp -TSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCE
T ss_pred -ccchhcccCchhhhhcccCCCCEEEecCCcCCccChHHHhcCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCE
Confidence 00000000112222 445556666655554 4455566666677777777776 554 45544321 2366777
Q ss_pred EEcccCCCCCCCCCCCCcCCCCCcEEEccCCcccccCCcccccccCceEEEEccCCCCCCCcchhhhcccc-CcEEeccc
Q 036411 208 LILWNNSFSGILPRLPNAKYDKLRHLDISTNNFSGKLPENLGIVFQKLIYLDVSKNSFEGNIPYSISEMKE-LITLDLSR 286 (487)
Q Consensus 208 L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~-L~~L~l~~ 286 (487)
|++++|.+........+..+++|+.|++++|.+.+.++ .+ ..+++|++|++++|.+. .++..+..+++ |+.|++++
T Consensus 310 L~L~~n~l~~ip~~~~l~~l~~L~~L~L~~N~l~g~ip-~~-~~l~~L~~L~L~~N~l~-~lp~~l~~l~~~L~~L~Ls~ 386 (636)
T 4eco_A 310 IYIGYNNLKTFPVETSLQKMKKLGMLECLYNQLEGKLP-AF-GSEIKLASLNLAYNQIT-EIPANFCGFTEQVENLSFAH 386 (636)
T ss_dssp EECCSSCCSSCCCHHHHTTCTTCCEEECCSCCCEEECC-CC-EEEEEESEEECCSSEEE-ECCTTSEEECTTCCEEECCS
T ss_pred EECCCCcCCccCchhhhccCCCCCEEeCcCCcCccchh-hh-CCCCCCCEEECCCCccc-cccHhhhhhcccCcEEEccC
Confidence 77777766622210123566677777777777665556 33 23467777777777766 55556666777 77777777
Q ss_pred ccCCCCCchhhhcCC--CCCcEEECCCCccCCCCCcCCc-------CCCCccEEEcCCCcccccccccccCCCcccEEEc
Q 036411 287 NNFSGELPRSIFSSC--LSLETLDLSNNNFYGQLFPNFM-------NLTHLSSLRLNNNHFSGKMADGLLSSTLLDVLDV 357 (487)
Q Consensus 287 ~~~~~~~~~~~~~~~--~~L~~L~l~~~~~~~~~~~~~~-------~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l 357 (487)
|.+. .+|.. +... ++|+.|++++|.+.+..+..+. .+++|+.|++++|.+.......+..+++|+.|++
T Consensus 387 N~l~-~lp~~-~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~~~l~~L~~L~L 464 (636)
T 4eco_A 387 NKLK-YIPNI-FDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINL 464 (636)
T ss_dssp SCCS-SCCSC-CCTTCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECCSSCCCSCCTHHHHTTCCCSEEEC
T ss_pred CcCc-ccchh-hhhcccCccCEEECcCCcCCCcchhhhcccccccccCCCCCEEECcCCccCcCCHHHHccCCCCCEEEC
Confidence 7776 66653 2333 3677777777777666555555 5667777777777776433344445677777777
Q ss_pred cCCccCCCchh-hhcc-------cccccEEecCCccccCcchhhhc--cCcCCcEEeccCCccccccccccCCCcceEEE
Q 036411 358 SNNKLSGDIPH-WIGN-------FSVLWLLLMSENYLQGSIPVQLG--NLESLEFIDISENGLSVSMVSLSNLSSVKHIY 427 (487)
Q Consensus 358 ~~~~~~~~~~~-~~~~-------~~~L~~L~l~~~~~~~~~~~~~~--~~~~L~~l~l~~~~~~~~~~~~~~~~~L~~L~ 427 (487)
++|+++ .+|. .+.. +++|++|++++|.++ ..|..+. .+++|+.|++++|+++..+..+..+++|+.|+
T Consensus 465 s~N~l~-~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~ip~~~~~l~~L~~L~ 542 (636)
T 4eco_A 465 MGNMLT-EIPKNSLKDENENFKNTYLLTSIDLRFNKLT-KLSDDFRATTLPYLVGIDLSYNSFSKFPTQPLNSSTLKGFG 542 (636)
T ss_dssp CSSCCS-BCCSSSSEETTEECTTGGGCCEEECCSSCCC-BCCGGGSTTTCTTCCEEECCSSCCSSCCCGGGGCSSCCEEE
T ss_pred CCCCCC-CcCHHHhccccccccccCCccEEECcCCcCC-ccChhhhhccCCCcCEEECCCCCCCCcChhhhcCCCCCEEE
Confidence 777776 3333 2222 227777777777776 5555554 77777777777777766666666777777777
Q ss_pred e------eCcccCCcchHhhhccCcceEEeCCCCcccccCcccccccCceeEEeccCCccC
Q 036411 428 L------HNNAINGLIPIALLRSSTLLTLDLRDNKFFGRIPHQINELSNLHFLLLRGNSLQ 482 (487)
Q Consensus 428 l------~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~ 482 (487)
+ ++|.+.+..|..+..+++|+.|++++|++ +.+|..+. ++|+.|++++|++.
T Consensus 543 Ls~N~~ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l-~~ip~~~~--~~L~~L~Ls~N~l~ 600 (636)
T 4eco_A 543 IRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDI-RKVNEKIT--PNISVLDIKDNPNI 600 (636)
T ss_dssp CCSCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCC-CBCCSCCC--TTCCEEECCSCTTC
T ss_pred CCCCcccccCcccccChHHHhcCCCCCEEECCCCcC-CccCHhHh--CcCCEEECcCCCCc
Confidence 7 34566666777777777777777777777 45665544 67777777777665
|
| >3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} | Back alignment and structure |
|---|
Probab=100.00 E-value=6.4e-39 Score=318.93 Aligned_cols=458 Identities=21% Similarity=0.216 Sum_probs=338.4
Q ss_pred cccccEEecCCccccccccccccCCCCCcEEEccCccccCCcccccccCCCCCcEEECCCCccCCCcchhccCCCCccEE
Q 036411 7 LKQLKILNLGFNFFIDSILPYLNTLTSLTTLNLRYNKIEGSRTKQGICNLKNLLELDLSSNNFEGHLPQCLNNLTHLKVL 86 (487)
Q Consensus 7 ~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L 86 (487)
+...++++++++.+.+ +|..+. ++|++|++++|.+.+ ..+..|.++++|++|++++|.+....+..+.++++|++|
T Consensus 30 ~~~~~~l~ls~~~L~~-ip~~~~--~~L~~L~Ls~N~i~~-~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L 105 (562)
T 3a79_B 30 NELESMVDYSNRNLTH-VPKDLP--PRTKALSLSQNSISE-LRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYL 105 (562)
T ss_dssp ---CCEEECTTSCCCS-CCTTSC--TTCCEEECCSSCCCC-CCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEE
T ss_pred cCCCcEEEcCCCCCcc-CCCCCC--CCcCEEECCCCCccc-cChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEE
Confidence 4455889999998775 454443 799999999999874 345679999999999999999987778889999999999
Q ss_pred eccCccccCCccccccCCCCCcEEeccccccCcchhHHHhhccccceEEEeccCCCccccccccccCCCCC--ceeeccc
Q 036411 87 DISYNQLSGNFPSVLTNLTSLEYLDLSFIDFQGTFLINSLANHSKLEVLVLSSGNDMLQVKTENWLPTYPL--KVLQLSH 164 (487)
Q Consensus 87 ~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~L--~~L~l~~ 164 (487)
++++|.++ .+|.. .+++|++|++++|.+.+...+..++.+++|++|+++++.- .. ..+...+.| +.+++.+
T Consensus 106 ~Ls~N~l~-~lp~~--~l~~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~l-~~---~~~~~l~~L~L~~L~L~~ 178 (562)
T 3a79_B 106 DVSHNRLQ-NISCC--PMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKF-RQ---LDLLPVAHLHLSCILLDL 178 (562)
T ss_dssp ECTTSCCC-EECSC--CCTTCSEEECCSSCCSBCCCCGGGGGCTTCCEEEEECSBC-CT---TTTGGGTTSCEEEEEEEE
T ss_pred ECCCCcCC-ccCcc--ccccCCEEECCCCCccccCchHhhcccCcccEEecCCCcc-cc---CchhhhhhceeeEEEeec
Confidence 99999988 45555 7899999999999987655557889999999999987542 22 234444555 9999988
Q ss_pred ccc--c-ccccccccCC-cccEEeCCCCcccCCcchHhhhcCCCCcEEEcccCCCC-----CCCCCCCCcCCCCCcEEEc
Q 036411 165 CHL--N-VNSSFLLHQH-HLKFLDLSHNQLVGNFPTWLLQNNTGLEVLILWNNSFS-----GILPRLPNAKYDKLRHLDI 235 (487)
Q Consensus 165 ~~~--~-~~~~~~~~~~-~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~-----~~~~~~~~~~~~~L~~L~l 235 (487)
|.+ . ..+..+..+. ..-.+++++|.+.+..+...+..+++|+.++++++... ...+ .+..+++++.+++
T Consensus 179 n~l~~~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~~~~~--~l~~l~~L~~L~L 256 (562)
T 3a79_B 179 VSYHIKGGETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLS--ELTRGPTLLNVTL 256 (562)
T ss_dssp SSCCCCSSSCCEEEECCEEEEEEEECSSSCCCCCCEEEESSEEEEEEEEEECCSTTHHHHHHHHH--HHHSCSSCEEEEE
T ss_pred ccccccccCcccccccCcceEEEEecCccchhhhhhhcccccceEEEecccccccccchHHHHHH--HHhccCcceEEEe
Confidence 876 2 2333444432 12255777777766666666667788889988876411 0000 1245677888888
Q ss_pred cCCcccccCCcccc--cccCceEEEEccCCCCCCCcchhh-----hccccCcEEecccccCCCCCchhhhcC---CCCCc
Q 036411 236 STNNFSGKLPENLG--IVFQKLIYLDVSKNSFEGNIPYSI-----SEMKELITLDLSRNNFSGELPRSIFSS---CLSLE 305 (487)
Q Consensus 236 ~~~~~~~~~~~~~~--~~~~~L~~L~l~~~~~~~~~~~~~-----~~~~~L~~L~l~~~~~~~~~~~~~~~~---~~~L~ 305 (487)
..+.+.+.....+. ...++|++|++++|.+.+..+..+ ..++.|+.+++..+.+ .+|...+.. ..+|+
T Consensus 257 ~~~~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~--~~p~~~~~~~~~~~~L~ 334 (562)
T 3a79_B 257 QHIETTWKCSVKLFQFFWPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVF--LFSKEALYSVFAEMNIK 334 (562)
T ss_dssp EEEEECHHHHHHHHHHHTTSSEEEEEEEEEEECSCCCCCCCCCCSCSCCEEEEEEEEECCC--SSCHHHHHHHHHTCCCS
T ss_pred cCCcCcHHHHHHHHHhhhcccccEEEEeccEeeccccchhhhcccccchheehhhccccee--ecChhhhhhhhccCcce
Confidence 77665432211111 113489999999998886666555 5666667777776665 455332221 25799
Q ss_pred EEECCCCccCCCCCcCCcCCCCccEEEcCCCcccccccccccCCCcccEEEccCCccCC--CchhhhcccccccEEecCC
Q 036411 306 TLDLSNNNFYGQLFPNFMNLTHLSSLRLNNNHFSGKMADGLLSSTLLDVLDVSNNKLSG--DIPHWIGNFSVLWLLLMSE 383 (487)
Q Consensus 306 ~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~--~~~~~~~~~~~L~~L~l~~ 383 (487)
.|++++|.+.... ....+++|++|++++|.+.+..+..+..+++|+.|++++|++++ ..|..+..+++|++|++++
T Consensus 335 ~L~l~~n~~~~~~--~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~ 412 (562)
T 3a79_B 335 MLSISDTPFIHMV--CPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSL 412 (562)
T ss_dssp EEEEESSCCCCCC--CCSSCCCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTT
T ss_pred EEEccCCCccccc--CccCCCCceEEECCCCccccchhhhhcccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCC
Confidence 9999999875432 22578999999999999987788888999999999999999875 3456789999999999999
Q ss_pred ccccCcch-hhhccCcCCcEEeccCCccccccccccCC-CcceEEEeeCcccCCcchHhhhccCcceEEeCCCCcccccC
Q 036411 384 NYLQGSIP-VQLGNLESLEFIDISENGLSVSMVSLSNL-SSVKHIYLHNNAINGLIPIALLRSSTLLTLDLRDNKFFGRI 461 (487)
Q Consensus 384 ~~~~~~~~-~~~~~~~~L~~l~l~~~~~~~~~~~~~~~-~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~ 461 (487)
|.+.+..+ ..+..+++|+.|++++|+++... +..+ ++|++|++++|.++.+ |..+..+++|+.|++++|+++. +
T Consensus 413 N~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~--~~~l~~~L~~L~L~~N~l~~i-p~~~~~l~~L~~L~L~~N~l~~-l 488 (562)
T 3a79_B 413 NSLNSHAYDRTCAWAESILVLNLSSNMLTGSV--FRCLPPKVKVLDLHNNRIMSI-PKDVTHLQALQELNVASNQLKS-V 488 (562)
T ss_dssp SCCBSCCSSCCCCCCTTCCEEECCSSCCCGGG--GSSCCTTCSEEECCSSCCCCC-CTTTTSSCCCSEEECCSSCCCC-C
T ss_pred CcCCCccChhhhcCcccCCEEECCCCCCCcch--hhhhcCcCCEEECCCCcCccc-ChhhcCCCCCCEEECCCCCCCC-C
Confidence 99986344 45788899999999999985322 2233 7999999999999865 4444489999999999999984 5
Q ss_pred cc-cccccCceeEEeccCCccCCCC
Q 036411 462 PH-QINELSNLHFLLLRGNSLQGRI 485 (487)
Q Consensus 462 ~~-~l~~l~~L~~L~l~~~~~~~~~ 485 (487)
|. .+..+++|+.|++++||+.+..
T Consensus 489 ~~~~~~~l~~L~~L~l~~N~~~c~c 513 (562)
T 3a79_B 489 PDGVFDRLTSLQYIWLHDNPWDCTC 513 (562)
T ss_dssp CTTSTTTCTTCCCEECCSCCBCCCH
T ss_pred CHHHHhcCCCCCEEEecCCCcCCCc
Confidence 54 4899999999999999998764
|
| >4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.4e-37 Score=314.31 Aligned_cols=421 Identities=19% Similarity=0.197 Sum_probs=318.9
Q ss_pred CCCcEEEccCccccCCcccccccCCCCCcEEEC-CCCccCCCcchh----------------------------------
Q 036411 32 TSLTTLNLRYNKIEGSRTKQGICNLKNLLELDL-SSNNFEGHLPQC---------------------------------- 76 (487)
Q Consensus 32 ~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l-~~~~~~~~~~~~---------------------------------- 76 (487)
.+++.|+++++.+.+.++ ..++++++|+.|++ +++.+....+..
T Consensus 323 ~~V~~L~Ls~~~L~G~ip-~~l~~L~~L~~LdLss~N~lsG~~~~~~~~~~~~l~~~~l~~lr~~~~~~~l~~~~~~~~s 401 (876)
T 4ecn_A 323 GRVTGLSLAGFGAKGRVP-DAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLS 401 (876)
T ss_dssp SCEEEEECTTTCCEEEEC-GGGGGCTTCCEEESCCTTHHHHTTCBTTBCCCSSCCHHHHHHHHTHHHHHHTCCCGGGGSC
T ss_pred CCEEEEECccCCCCCcCc-hHHhccccceEeeecccccccccccccccccccccchhHHHHHHHhhhhhhhccCcchhhh
Confidence 579999999999976554 67999999999999 777543221110
Q ss_pred ------c-----------cCCCCccEEeccC--ccccCCccccccCCCCCcEEeccccccCcc----------------h
Q 036411 77 ------L-----------NNLTHLKVLDISY--NQLSGNFPSVLTNLTSLEYLDLSFIDFQGT----------------F 121 (487)
Q Consensus 77 ------~-----------~~l~~L~~L~l~~--~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~----------------~ 121 (487)
+ .....++.+.+.. |.++. +|..+.++++|+.|++++|.+.+. .
T Consensus 402 ~l~~~~l~~~~~~~~i~~~~~l~l~~l~l~~~~N~L~~-IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~ 480 (876)
T 4ecn_A 402 DLLQDAINRNPEMKPIKKDSRISLKDTQIGNLTNRITF-ISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQY 480 (876)
T ss_dssp HHHHHHHHTCTTSCCCCCCCCCCCCTTTTTCCSCEEEE-ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHH
T ss_pred HHHHHHhhhCccccccccccccchhhceeccccCcccc-hhHHHhcCCCCCEEECcCCcCCCCccccccccccccccccc
Confidence 0 1112233333333 55665 788999999999999999998872 2
Q ss_pred hHHHhh--ccccceEEEeccCCCccccccccccCCCCCceeeccccc-cc--ccccccccC-------CcccEEeCCCCc
Q 036411 122 LINSLA--NHSKLEVLVLSSGNDMLQVKTENWLPTYPLKVLQLSHCH-LN--VNSSFLLHQ-------HHLKFLDLSHNQ 189 (487)
Q Consensus 122 ~~~~~~--~~~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~-~~--~~~~~~~~~-------~~L~~L~l~~~~ 189 (487)
.+..++ .+++|+.|+++.+.....++ ..+..+++|+.|++++|. ++ .+|..+..+ ++|+.|++++|.
T Consensus 481 iP~~l~f~~L~~L~~L~Ls~N~l~~~iP-~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~ 559 (876)
T 4ecn_A 481 ENEELSWSNLKDLTDVELYNCPNMTQLP-DFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNN 559 (876)
T ss_dssp TTSCCCGGGCTTCCEEEEESCTTCCSCC-GGGGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSC
T ss_pred CChhhhhccCCCCCEEECcCCCCCccCh-HHHhCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCc
Confidence 444545 99999999998876555554 567888999999999997 65 366655544 499999999999
Q ss_pred ccCCcch-HhhhcCCCCcEEEcccCCCCCCCCCCCCcCCCCCcEEEccCCcccccCCcccccccCc-eEEEEccCCCCCC
Q 036411 190 LVGNFPT-WLLQNNTGLEVLILWNNSFSGILPRLPNAKYDKLRHLDISTNNFSGKLPENLGIVFQK-LIYLDVSKNSFEG 267 (487)
Q Consensus 190 ~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~-L~~L~l~~~~~~~ 267 (487)
+. .++. ..+..+++|+.|++++|.+. ..+ .+..+++|+.|++++|.+. .++..+... ++ |++|++++|.+.
T Consensus 560 L~-~ip~~~~l~~L~~L~~L~Ls~N~l~-~lp--~~~~L~~L~~L~Ls~N~l~-~lp~~l~~l-~~~L~~L~Ls~N~L~- 632 (876)
T 4ecn_A 560 LE-EFPASASLQKMVKLGLLDCVHNKVR-HLE--AFGTNVKLTDLKLDYNQIE-EIPEDFCAF-TDQVEGLGFSHNKLK- 632 (876)
T ss_dssp CC-BCCCHHHHTTCTTCCEEECTTSCCC-BCC--CCCTTSEESEEECCSSCCS-CCCTTSCEE-CTTCCEEECCSSCCC-
T ss_pred CC-ccCChhhhhcCCCCCEEECCCCCcc-cch--hhcCCCcceEEECcCCccc-cchHHHhhc-cccCCEEECcCCCCC-
Confidence 98 7776 34568999999999999988 333 5588899999999999998 777776554 56 999999999988
Q ss_pred Ccchhhhccc--cCcEEecccccCCCCCchhh--hc--CCCCCcEEECCCCccCCCCCcCCcCCCCccEEEcCCCccccc
Q 036411 268 NIPYSISEMK--ELITLDLSRNNFSGELPRSI--FS--SCLSLETLDLSNNNFYGQLFPNFMNLTHLSSLRLNNNHFSGK 341 (487)
Q Consensus 268 ~~~~~~~~~~--~L~~L~l~~~~~~~~~~~~~--~~--~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~ 341 (487)
.++..+...+ +|+.|++++|.+.+.+|... +. .+++|+.|++++|.+.......+..+++|+.|++++|.+...
T Consensus 633 ~lp~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L~~lp~~~~~~l~~L~~L~Ls~N~L~~i 712 (876)
T 4ecn_A 633 YIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMTSI 712 (876)
T ss_dssp SCCSCCCTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSSCCCSCCHHHHHTTCCCSEEECCSCCCSCC
T ss_pred cCchhhhccccCCCCEEECcCCcCCCccccchhhhccccCCCcCEEEccCCcCCccCHHHHccCCCCCEEECCCCcCCcc
Confidence 6666666554 49999999999986554311 11 345899999999999854433445789999999999999833
Q ss_pred ccccccC-------CCcccEEEccCCccCCCchhhhc--ccccccEEecCCccccCcchhhhccCcCCcEEeccCC----
Q 036411 342 MADGLLS-------STLLDVLDVSNNKLSGDIPHWIG--NFSVLWLLLMSENYLQGSIPVQLGNLESLEFIDISEN---- 408 (487)
Q Consensus 342 ~~~~~~~-------~~~L~~L~l~~~~~~~~~~~~~~--~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~---- 408 (487)
....+.. +++|+.|++++|+++ .+|..+. .+++|+.|++++|.+.+ .|..+..+++|+.|++++|
T Consensus 713 p~~~~~~~~~~l~nl~~L~~L~Ls~N~L~-~lp~~l~~~~l~~L~~L~Ls~N~L~~-lp~~l~~L~~L~~L~Ls~N~~ls 790 (876)
T 4ecn_A 713 PENSLKPKDGNYKNTYLLTTIDLRFNKLT-SLSDDFRATTLPYLSNMDVSYNCFSS-FPTQPLNSSQLKAFGIRHQRDAE 790 (876)
T ss_dssp CTTSSSCTTSCCTTGGGCCEEECCSSCCC-CCCGGGSTTTCTTCCEEECCSSCCSS-CCCGGGGCTTCCEEECCCCBCTT
T ss_pred ChHHhccccccccccCCccEEECCCCCCc-cchHHhhhccCCCcCEEEeCCCCCCc-cchhhhcCCCCCEEECCCCCCcc
Confidence 3333322 239999999999998 6777776 99999999999999985 7888889999999999874
Q ss_pred --cc-ccccccccCCCcceEEEeeCcccCCcchHhhhccCcceEEeCCCCcccccCcccccc
Q 036411 409 --GL-SVSMVSLSNLSSVKHIYLHNNAINGLIPIALLRSSTLLTLDLRDNKFFGRIPHQINE 467 (487)
Q Consensus 409 --~~-~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~ 467 (487)
.+ ...+..+..+++|+.|++++|.+. .+|..+. ++|+.|+|++|++....+..+..
T Consensus 791 ~N~l~~~ip~~l~~L~~L~~L~Ls~N~L~-~Ip~~l~--~~L~~LdLs~N~l~~i~~~~~~~ 849 (876)
T 4ecn_A 791 GNRILRQWPTGITTCPSLIQLQIGSNDIR-KVDEKLT--PQLYILDIADNPNISIDVTSVCP 849 (876)
T ss_dssp CCBCCCCCCTTGGGCSSCCEEECCSSCCC-BCCSCCC--SSSCEEECCSCTTCEEECGGGHH
T ss_pred cccccccChHHHhcCCCCCEEECCCCCCC-ccCHhhc--CCCCEEECCCCCCCccChHHccc
Confidence 44 345556677888888888888884 4454443 68888888888876554444433
|
| >3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=7.4e-36 Score=289.73 Aligned_cols=367 Identities=21% Similarity=0.228 Sum_probs=226.1
Q ss_pred CCCcEEECCCCccCCCcchhccCCCCccEEeccCccccC-CccccccCCCCCcEEeccccccCcchhHHHhhccccceEE
Q 036411 57 KNLLELDLSSNNFEGHLPQCLNNLTHLKVLDISYNQLSG-NFPSVLTNLTSLEYLDLSFIDFQGTFLINSLANHSKLEVL 135 (487)
Q Consensus 57 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~-~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~l 135 (487)
++|++|+++++.+....+..+.++++|++|++++|.+.. ..+..|..+++|++|++++|.+.
T Consensus 30 ~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~l~----------------- 92 (455)
T 3v47_A 30 AHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFL----------------- 92 (455)
T ss_dssp TTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCTTC-----------------
T ss_pred CccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCCCccC-----------------
Confidence 455555555555554445555555555555555554432 22334455555555555544432
Q ss_pred EeccCCCccccccccccCCCCCceeecccccccccccccccCCcccEEeCCCCcccCCcch-HhhhcCCCCcEEEcccCC
Q 036411 136 VLSSGNDMLQVKTENWLPTYPLKVLQLSHCHLNVNSSFLLHQHHLKFLDLSHNQLVGNFPT-WLLQNNTGLEVLILWNNS 214 (487)
Q Consensus 136 ~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~-~~~~~~~~L~~L~l~~~~ 214 (487)
...+..+..+++|++|++++|.+.+..+. ..+..+++|++|++++|.
T Consensus 93 --------------------------------~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~ 140 (455)
T 3v47_A 93 --------------------------------QLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNN 140 (455)
T ss_dssp --------------------------------EECTTTTTTCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSB
T ss_pred --------------------------------ccChhhccCcccCCEEeCCCCCCCccccCcccccCcccCCEEECCCCc
Confidence 11233455566777777777766532222 224467777777777777
Q ss_pred CCCCCCCCCCcCCCCCcEEEccCCcccccCCcccccc-cCceEEEEccCCCCCCCcchh--------hhccccCcEEecc
Q 036411 215 FSGILPRLPNAKYDKLRHLDISTNNFSGKLPENLGIV-FQKLIYLDVSKNSFEGNIPYS--------ISEMKELITLDLS 285 (487)
Q Consensus 215 ~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~-~~~L~~L~l~~~~~~~~~~~~--------~~~~~~L~~L~l~ 285 (487)
+....+...+..+++|+.|++++|.+.+..+..+... ..+++.|+++++.+.+..+.. +..+++|+.|+++
T Consensus 141 l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls 220 (455)
T 3v47_A 141 IKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLS 220 (455)
T ss_dssp CCSCCCCGGGGGCTTCCEEECTTCCBSCCCTTTSGGGTTCEEEEEECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECT
T ss_pred cCccCcccccCCCCcccEEeCCCCcccccChhhhhccccccccccccccCcccccchhhccccccccccccceeeeEecC
Confidence 7655444335778899999999998886555554432 268999999999887543322 2245789999999
Q ss_pred cccCCCCCchhhhc--CCCCCcEEECCCCccCCCCCcCCcCCCCccEEEcCCCccccccccccc--CCCcccEEEccCCc
Q 036411 286 RNNFSGELPRSIFS--SCLSLETLDLSNNNFYGQLFPNFMNLTHLSSLRLNNNHFSGKMADGLL--SSTLLDVLDVSNNK 361 (487)
Q Consensus 286 ~~~~~~~~~~~~~~--~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~--~~~~L~~L~l~~~~ 361 (487)
+|.+.+..+..++. ..++|+.+++++|...+.... ...++. .....+. ..++|+.|++++|.
T Consensus 221 ~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~-~~~~~~-------------~~~~~~~~~~~~~L~~L~l~~n~ 286 (455)
T 3v47_A 221 GNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFG-HTNFKD-------------PDNFTFKGLEASGVKTCDLSKSK 286 (455)
T ss_dssp TSCCCHHHHHHHHHHTTTCCEEEEECTTCTTTSCCTT-CCSSCC-------------CCTTTTGGGTTSCCCEEECCSSC
T ss_pred CCcccccchhhhhccccccceeeEeeccccccccccc-hhhhcc-------------CcccccccccccCceEEEecCcc
Confidence 99887555544332 237889999988865432111 000000 0011111 23566777777776
Q ss_pred cCCCchhhhcccccccEEecCCccccCcchhhhccCcCCcEEeccCCccccc-cccccCCCcceEEEeeCcccCCcchHh
Q 036411 362 LSGDIPHWIGNFSVLWLLLMSENYLQGSIPVQLGNLESLEFIDISENGLSVS-MVSLSNLSSVKHIYLHNNAINGLIPIA 440 (487)
Q Consensus 362 ~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~-~~~~~~~~~L~~L~l~~~~~~~~~~~~ 440 (487)
+.+..+..++.+++|++|++++|.+.+..+..+..+++|+.|++++|.+... +..+..+++|++|++++|.+++..+.+
T Consensus 287 l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~ 366 (455)
T 3v47_A 287 IFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQS 366 (455)
T ss_dssp CCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGGTTCTTCCEEECCSSCCCEECTTT
T ss_pred ccccchhhcccCCCCCEEECCCCcccccChhHhcCcccCCEEECCCCccCCcChhHhcCcccCCEEECCCCcccccChhh
Confidence 6666666666777777777777776655566666677777777777766433 344556677777777777777666666
Q ss_pred hhccCcceEEeCCCCcccccCcccccccCceeEEeccCCccCCCCC
Q 036411 441 LLRSSTLLTLDLRDNKFFGRIPHQINELSNLHFLLLRGNSLQGRIP 486 (487)
Q Consensus 441 ~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~p 486 (487)
+..+++|+.|++++|++++..+..+..+++|+.|++++|++.+..|
T Consensus 367 ~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~ 412 (455)
T 3v47_A 367 FLGLPNLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 412 (455)
T ss_dssp TTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTT
T ss_pred ccccccccEEECCCCccccCCHhHhccCCcccEEEccCCCcccCCC
Confidence 7777777777777777766555566777777777777777777666
|
| >3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} | Back alignment and structure |
|---|
Probab=100.00 E-value=5e-36 Score=298.12 Aligned_cols=439 Identities=20% Similarity=0.184 Sum_probs=327.9
Q ss_pred ccccEEecCCccccccccccccCCCCCcEEEccCccccCCcccccccCCCCCcEEECCCCccCCCcchhccCCCCccEEe
Q 036411 8 KQLKILNLGFNFFIDSILPYLNTLTSLTTLNLRYNKIEGSRTKQGICNLKNLLELDLSSNNFEGHLPQCLNNLTHLKVLD 87 (487)
Q Consensus 8 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~ 87 (487)
++|++|++++|.+.+..+..|+.+++|++|++++|.+++ ..+++|.++++|++|++++|.+. .+|.. .+++|++|+
T Consensus 52 ~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~-~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~--~l~~L~~L~ 127 (562)
T 3a79_B 52 PRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRS-LDFHVFLFNQDLEYLDVSHNRLQ-NISCC--PMASLRHLD 127 (562)
T ss_dssp TTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCE-ECTTTTTTCTTCCEEECTTSCCC-EECSC--CCTTCSEEE
T ss_pred CCcCEEECCCCCccccChhhhccCCCccEEECCCCCCCc-CCHHHhCCCCCCCEEECCCCcCC-ccCcc--ccccCCEEE
Confidence 789999999999988888899999999999999999874 34577999999999999999998 56655 899999999
Q ss_pred ccCccccCC-ccccccCCCCCcEEeccccccCcchhHHHhhccccc--eEEEeccCCCc-cccccccccCCC-CCceeec
Q 036411 88 ISYNQLSGN-FPSVLTNLTSLEYLDLSFIDFQGTFLINSLANHSKL--EVLVLSSGNDM-LQVKTENWLPTY-PLKVLQL 162 (487)
Q Consensus 88 l~~~~~~~~-~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L--~~l~l~~~~~~-~~~~~~~~~~~~-~L~~L~l 162 (487)
+++|.++.. .|..|.++++|++|++++|.+... .+..+++| ++++++.+... .......+.... ..-++++
T Consensus 128 Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~~----~~~~l~~L~L~~L~L~~n~l~~~~~~~~~l~~l~~~~l~l~l 203 (562)
T 3a79_B 128 LSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQL----DLLPVAHLHLSCILLDLVSYHIKGGETESLQIPNTTVLHLVF 203 (562)
T ss_dssp CCSSCCSBCCCCGGGGGCTTCCEEEEECSBCCTT----TTGGGTTSCEEEEEEEESSCCCCSSSCCEEEECCEEEEEEEE
T ss_pred CCCCCccccCchHhhcccCcccEEecCCCccccC----chhhhhhceeeEEEeecccccccccCcccccccCcceEEEEe
Confidence 999999853 457899999999999999998752 34555666 99999876531 222222333222 1224566
Q ss_pred cccccc--ccccccccCCcccEEeCCCCcccC-Ccc--hHhhhcCCCCcEEEcccCCCCCCCCC--CCCcCCCCCcEEEc
Q 036411 163 SHCHLN--VNSSFLLHQHHLKFLDLSHNQLVG-NFP--TWLLQNNTGLEVLILWNNSFSGILPR--LPNAKYDKLRHLDI 235 (487)
Q Consensus 163 ~~~~~~--~~~~~~~~~~~L~~L~l~~~~~~~-~~~--~~~~~~~~~L~~L~l~~~~~~~~~~~--~~~~~~~~L~~L~l 235 (487)
.++.+. .....+..+++|+.+++++|...- .+. ...+..++.++.+.+.++.+...... ......++|+.|++
T Consensus 204 ~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~~~~~~l~~l~~L~~L~L~~~~l~~~~~~~~~~~~~~~~L~~L~l 283 (562)
T 3a79_B 204 HPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQFFWPRPVEYLNI 283 (562)
T ss_dssp CSSSCCCCCCEEEESSEEEEEEEEEECCSTTHHHHHHHHHHHHSCSSCEEEEEEEEEECHHHHHHHHHHHTTSSEEEEEE
T ss_pred cCccchhhhhhhcccccceEEEecccccccccchHHHHHHHHhccCcceEEEecCCcCcHHHHHHHHHhhhcccccEEEE
Confidence 666652 233345568899999998874110 011 11245778888888877654321000 00012348999999
Q ss_pred cCCcccccCCcccc----cccCceEEEEccCCCCCCCcchhhh---ccccCcEEecccccCCCCCchhhhcCCCCCcEEE
Q 036411 236 STNNFSGKLPENLG----IVFQKLIYLDVSKNSFEGNIPYSIS---EMKELITLDLSRNNFSGELPRSIFSSCLSLETLD 308 (487)
Q Consensus 236 ~~~~~~~~~~~~~~----~~~~~L~~L~l~~~~~~~~~~~~~~---~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~ 308 (487)
++|.+.+.+|..++ ..++.|+.+++..+.+. .....+. ...+|+.|++++|.+. ..+. ...+++|++|+
T Consensus 284 ~~n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~~-~p~~~~~~~~~~~~L~~L~l~~n~~~-~~~~--~~~l~~L~~L~ 359 (562)
T 3a79_B 284 YNLTITERIDREEFTYSETALKSLMIEHVKNQVFL-FSKEALYSVFAEMNIKMLSISDTPFI-HMVC--PPSPSSFTFLN 359 (562)
T ss_dssp EEEEECSCCCCCCCCCCSCSCCEEEEEEEEECCCS-SCHHHHHHHHHTCCCSEEEEESSCCC-CCCC--CSSCCCCCEEE
T ss_pred eccEeeccccchhhhcccccchheehhhcccceee-cChhhhhhhhccCcceEEEccCCCcc-cccC--ccCCCCceEEE
Confidence 99988877777653 23456666666666551 1112222 2357999999999886 3332 25788999999
Q ss_pred CCCCccCCCCCcCCcCCCCccEEEcCCCcccc--cccccccCCCcccEEEccCCccCCCch-hhhcccccccEEecCCcc
Q 036411 309 LSNNNFYGQLFPNFMNLTHLSSLRLNNNHFSG--KMADGLLSSTLLDVLDVSNNKLSGDIP-HWIGNFSVLWLLLMSENY 385 (487)
Q Consensus 309 l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~--~~~~~~~~~~~L~~L~l~~~~~~~~~~-~~~~~~~~L~~L~l~~~~ 385 (487)
+++|.+.+..+..+..+++|+.|++++|.+.+ ..+..+..+++|+.|++++|++++.+| ..+..+++|++|++++|.
T Consensus 360 l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~l~~L~~L~l~~n~ 439 (562)
T 3a79_B 360 FTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNM 439 (562)
T ss_dssp CCSSCCCTTTTTTCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSCCBSCCSSCCCCCCTTCCEEECCSSC
T ss_pred CCCCccccchhhhhcccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCcCCCccChhhhcCcccCCEEECCCCC
Confidence 99999988788888999999999999999885 334567889999999999999987444 457889999999999999
Q ss_pred ccCcchhhhccCcCCcEEeccCCccccccccccCCCcceEEEeeCcccCCcchHhhhccCcceEEeCCCCccccc
Q 036411 386 LQGSIPVQLGNLESLEFIDISENGLSVSMVSLSNLSSVKHIYLHNNAINGLIPIALLRSSTLLTLDLRDNKFFGR 460 (487)
Q Consensus 386 ~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~ 460 (487)
+++..+..+. ++|+.|++++|+++..+..+..+++|++|++++|+++...+.++..+++|+.|++++|++.+.
T Consensus 440 l~~~~~~~l~--~~L~~L~L~~N~l~~ip~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~l~~N~~~c~ 512 (562)
T 3a79_B 440 LTGSVFRCLP--PKVKVLDLHNNRIMSIPKDVTHLQALQELNVASNQLKSVPDGVFDRLTSLQYIWLHDNPWDCT 512 (562)
T ss_dssp CCGGGGSSCC--TTCSEEECCSSCCCCCCTTTTSSCCCSEEECCSSCCCCCCTTSTTTCTTCCCEECCSCCBCCC
T ss_pred CCcchhhhhc--CcCCEEECCCCcCcccChhhcCCCCCCEEECCCCCCCCCCHHHHhcCCCCCEEEecCCCcCCC
Confidence 8765555543 799999999999987777777999999999999999976665688899999999999998643
|
| >4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=4.7e-34 Score=289.35 Aligned_cols=443 Identities=23% Similarity=0.240 Sum_probs=290.1
Q ss_pred ccccccccccEEecCCccccccccccccCCCCCcEEEccCccccCCcccccccCCCCCcEEECCCCccCCCcchhccCCC
Q 036411 2 DSFGSLKQLKILNLGFNFFIDSILPYLNTLTSLTTLNLRYNKIEGSRTKQGICNLKNLLELDLSSNNFEGHLPQCLNNLT 81 (487)
Q Consensus 2 ~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~ 81 (487)
++|.++++|++|+|++|.+....+.+|+.+++|++|++++|.+.+ ..++.|.++++|++|++++|.+....+..+++++
T Consensus 70 ~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~-l~~~~f~~L~~L~~L~Ls~N~l~~l~~~~~~~L~ 148 (635)
T 4g8a_A 70 YSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQS-LALGAFSGLSSLQKLVAVETNLASLENFPIGHLK 148 (635)
T ss_dssp TTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCE-ECGGGGTTCTTCCEEECTTSCCCCSTTCCCTTCT
T ss_pred HHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCCC-CCHHHhcCCCCCCEEECCCCcCCCCChhhhhcCc
Confidence 478999999999999999988888899999999999999999873 4556799999999999999999876667799999
Q ss_pred CccEEeccCccccC-CccccccCCCCCcEEeccccccCcchhHHHhhccccce----EEEec------------------
Q 036411 82 HLKVLDISYNQLSG-NFPSVLTNLTSLEYLDLSFIDFQGTFLINSLANHSKLE----VLVLS------------------ 138 (487)
Q Consensus 82 ~L~~L~l~~~~~~~-~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~----~l~l~------------------ 138 (487)
+|++|++++|.++. ..|..+..+++|++|++++|.+.+.. ...+..+++++ .++++
T Consensus 149 ~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~-~~~l~~L~~l~~~~~~~~ls~n~l~~i~~~~~~~~~~~ 227 (635)
T 4g8a_A 149 TLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIY-CTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLH 227 (635)
T ss_dssp TCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEEC-GGGGHHHHTCTTCCCEEECTTCCCCEECTTTTTTCEEE
T ss_pred ccCeeccccCccccCCCchhhccchhhhhhcccCccccccc-cccccchhhhhhhhhhhhcccCcccccCcccccchhhh
Confidence 99999999999864 35778889999999999999876432 22222222211 22221
Q ss_pred -----cCCCccccccccccCCCCCceee------------------------------cccccc----cccccccccCCc
Q 036411 139 -----SGNDMLQVKTENWLPTYPLKVLQ------------------------------LSHCHL----NVNSSFLLHQHH 179 (487)
Q Consensus 139 -----~~~~~~~~~~~~~~~~~~L~~L~------------------------------l~~~~~----~~~~~~~~~~~~ 179 (487)
............+.....++... +..... ......+....+
T Consensus 228 ~l~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~ 307 (635)
T 4g8a_A 228 KLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDGIIDLFNCLTN 307 (635)
T ss_dssp EEEEESCCSSHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCTTTTGGGGGSEEEEEEEECCCSCEEECTTTTGGGTT
T ss_pred hhhhhcccccccccchhhcCCcccccccccccccccccccccccccccccccchhhhhhhhhhhcccccchhhhhhhhcc
Confidence 11100001111111112222111 111111 111122333455
Q ss_pred ccEEeCCCCcccCCcchHhhhcCCCCcEEEcccCCCCCCCCCCCCcCCCCCcEEEccCCcccccCCcccccccCceEEEE
Q 036411 180 LKFLDLSHNQLVGNFPTWLLQNNTGLEVLILWNNSFSGILPRLPNAKYDKLRHLDISTNNFSGKLPENLGIVFQKLIYLD 259 (487)
Q Consensus 180 L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~ 259 (487)
++.+.+.++.+.. ... +.....++.+++.++.+.... ...++.++.+.+..+..... ... ..+++|+.++
T Consensus 308 l~~l~~~~~~~~~-~~~--~~~~~~L~~L~l~~~~~~~~~----~~~l~~L~~l~l~~n~~~~~-~~~--~~l~~L~~L~ 377 (635)
T 4g8a_A 308 VSSFSLVSVTIER-VKD--FSYNFGWQHLELVNCKFGQFP----TLKLKSLKRLTFTSNKGGNA-FSE--VDLPSLEFLD 377 (635)
T ss_dssp CSEEEEESCEEEE-CGG--GGSCCCCSEEEEESCEESSCC----CCBCTTCCEEEEESCCSCCB-CCC--CBCTTCCEEE
T ss_pred ccccccccccccc-ccc--cccchhhhhhhcccccccCcC----cccchhhhhcccccccCCCC-ccc--ccccccccch
Confidence 6666666665432 222 234567777777777654332 23456677777776654422 111 1246788888
Q ss_pred ccCCCCCC--CcchhhhccccCcEEecccccCCCCCchhhhcCCCCCcEEECCCCccCCC-CCcCCcCCCCccEEEcCCC
Q 036411 260 VSKNSFEG--NIPYSISEMKELITLDLSRNNFSGELPRSIFSSCLSLETLDLSNNNFYGQ-LFPNFMNLTHLSSLRLNNN 336 (487)
Q Consensus 260 l~~~~~~~--~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~-~~~~~~~~~~L~~L~l~~~ 336 (487)
+++|.+.. ..+.......+++.+++..+... ..+.. |..+++|+.+++.++..... ....+..+++++.+++++|
T Consensus 378 ls~n~l~~~~~~~~~~~~~~~L~~L~~~~~~~~-~~~~~-~~~l~~L~~l~l~~~~~~~~~~~~~~~~l~~l~~l~ls~n 455 (635)
T 4g8a_A 378 LSRNGLSFKGCCSQSDFGTISLKYLDLSFNGVI-TMSSN-FLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHT 455 (635)
T ss_dssp CCSSCCBEEEECCHHHHSCSCCCEEECCSCSEE-EECSC-CTTCTTCCEEECTTSEEESTTSSCTTTTCTTCCEEECTTS
T ss_pred hhccccccccccccchhhhhhhhhhhccccccc-ccccc-ccccccccchhhhhcccccccccccccccccccccccccc
Confidence 88777642 23344556677777777777654 33332 45677777777777654332 2344566777777777777
Q ss_pred cccccccccccCCCcccEEEccCCccC-CCchhhhcccccccEEecCCccccCcchhhhccCcCCcEEeccCCcccccc-
Q 036411 337 HFSGKMADGLLSSTLLDVLDVSNNKLS-GDIPHWIGNFSVLWLLLMSENYLQGSIPVQLGNLESLEFIDISENGLSVSM- 414 (487)
Q Consensus 337 ~~~~~~~~~~~~~~~L~~L~l~~~~~~-~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~- 414 (487)
.+....+..+..+++++.|++++|... ...|..+..+++|++|++++|++++..|..|..+++|+.|++++|+++...
T Consensus 456 ~l~~~~~~~~~~~~~L~~L~Ls~N~~~~~~~~~~~~~l~~L~~L~Ls~N~L~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~ 535 (635)
T 4g8a_A 456 HTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDT 535 (635)
T ss_dssp CCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCBCCC
T ss_pred ccccccccccccchhhhhhhhhhcccccccCchhhhhccccCEEECCCCccCCcChHHHcCCCCCCEEECCCCcCCCCCh
Confidence 777666666777777777777777643 345666777777777888777777666777777777777888777775443
Q ss_pred ccccCCCcceEEEeeCcccCCcchHhhhcc-CcceEEeCCCCccc
Q 036411 415 VSLSNLSSVKHIYLHNNAINGLIPIALLRS-STLLTLDLRDNKFF 458 (487)
Q Consensus 415 ~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~-~~L~~L~l~~~~~~ 458 (487)
..+..+++|+.|++++|++++..+.++..+ ++|+.|++++|++.
T Consensus 536 ~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~~L~~L~L~~Np~~ 580 (635)
T 4g8a_A 536 FPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFA 580 (635)
T ss_dssp GGGTTCTTCCEEECTTSCCCBCCSSCTTCCCTTCCEEECTTCCBC
T ss_pred hHHhCCCCCCEEECCCCcCCCCCHHHHHhhhCcCCEEEeeCCCCc
Confidence 345677777788887777777777777665 57777887777764
|
| >3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=7.2e-35 Score=282.78 Aligned_cols=362 Identities=23% Similarity=0.234 Sum_probs=197.2
Q ss_pred ccccEEecCCccccccccccccCCCCCcEEEccCccccCCcccccccCCCCCcEEECCCCccCCCcchhccCCCCccEEe
Q 036411 8 KQLKILNLGFNFFIDSILPYLNTLTSLTTLNLRYNKIEGSRTKQGICNLKNLLELDLSSNNFEGHLPQCLNNLTHLKVLD 87 (487)
Q Consensus 8 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~ 87 (487)
++|++|++++|.+.+..+..++.+++|++|+++++.+.+...+..|.++++|++|++++|.+....|..+.++++|++|+
T Consensus 30 ~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ 109 (455)
T 3v47_A 30 AHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLETGAFNGLANLEVLT 109 (455)
T ss_dssp TTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCTTCEECTTTTTTCTTCCEEE
T ss_pred CccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCCCccCccChhhccCcccCCEEe
Confidence 56777777777776666667777777777777777765445556677777777777777777655667777777777777
Q ss_pred ccCccccCCcccc--ccCCCCCcEEeccccccCcchhHHHhhccccceEEEeccCCCccccccccccCC--CCCceeecc
Q 036411 88 ISYNQLSGNFPSV--LTNLTSLEYLDLSFIDFQGTFLINSLANHSKLEVLVLSSGNDMLQVKTENWLPT--YPLKVLQLS 163 (487)
Q Consensus 88 l~~~~~~~~~~~~--~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~--~~L~~L~l~ 163 (487)
+++|.++...+.. +..+++|++|++++|.+.+..+...+..+++|++++++++.. .......+... ..++.+++.
T Consensus 110 L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l-~~~~~~~l~~l~~~~L~~L~l~ 188 (455)
T 3v47_A 110 LTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKV-KSICEEDLLNFQGKHFTLLRLS 188 (455)
T ss_dssp CTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCB-SCCCTTTSGGGTTCEEEEEECT
T ss_pred CCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCcc-cccChhhhhccccccccccccc
Confidence 7777776533333 667777777777777776544444466777777777765432 22222222222 456666666
Q ss_pred cccccccccc---------cccCCcccEEeCCCCcccCCcchHhhhc--CCCCcEEEcccCCCCCCCCCCCCcCCCCCcE
Q 036411 164 HCHLNVNSSF---------LLHQHHLKFLDLSHNQLVGNFPTWLLQN--NTGLEVLILWNNSFSGILPRLPNAKYDKLRH 232 (487)
Q Consensus 164 ~~~~~~~~~~---------~~~~~~L~~L~l~~~~~~~~~~~~~~~~--~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~ 232 (487)
++.+...+.. +..+++|+.|++++|.+.+..+..+... .+.++.+.++++........
T Consensus 189 ~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~----------- 257 (455)
T 3v47_A 189 SITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFG----------- 257 (455)
T ss_dssp TCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECTTCTTTSCCTT-----------
T ss_pred cCcccccchhhccccccccccccceeeeEecCCCcccccchhhhhccccccceeeEeeccccccccccc-----------
Confidence 6665333221 2234566666666666654444433321 24555555555432211000
Q ss_pred EEccCCcccccCCcccccccCceEEEEccCCCCCCCcchhhh--ccccCcEEecccccCCCCCchhhhcCCCCCcEEECC
Q 036411 233 LDISTNNFSGKLPENLGIVFQKLIYLDVSKNSFEGNIPYSIS--EMKELITLDLSRNNFSGELPRSIFSSCLSLETLDLS 310 (487)
Q Consensus 233 L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~--~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~ 310 (487)
.+.+.......+. ..++|+.|++++|.+. ..+...|..+++|++|+++
T Consensus 258 -----------------------------~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~Ls 307 (455)
T 3v47_A 258 -----------------------------HTNFKDPDNFTFKGLEASGVKTCDLSKSKIF-ALLKSVFSHFTDLEQLTLA 307 (455)
T ss_dssp -----------------------------CCSSCCCCTTTTGGGTTSCCCEEECCSSCCC-EECTTTTTTCTTCCEEECT
T ss_pred -----------------------------hhhhccCcccccccccccCceEEEecCcccc-ccchhhcccCCCCCEEECC
Confidence 0000000000111 1234444445444444 2223333444555555555
Q ss_pred CCccCCCCCcCCcCCCCccEEEcCCCcccccccccccCCCcccEEEccCCccCCCchhhhcccccccEEecCCccccCcc
Q 036411 311 NNNFYGQLFPNFMNLTHLSSLRLNNNHFSGKMADGLLSSTLLDVLDVSNNKLSGDIPHWIGNFSVLWLLLMSENYLQGSI 390 (487)
Q Consensus 311 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~ 390 (487)
+|.+.+..+..+..+++|+.|++++|.+.+..+..+..+++|++|++++|++++..|..+..+++|++|++++|.+++..
T Consensus 308 ~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~ 387 (455)
T 3v47_A 308 QNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKSVP 387 (455)
T ss_dssp TSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGGTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCC
T ss_pred CCcccccChhHhcCcccCCEEECCCCccCCcChhHhcCcccCCEEECCCCcccccChhhccccccccEEECCCCccccCC
Confidence 55544444444445555555555555554444444555555555555555555444555555555555555555555433
Q ss_pred hhhhccCcCCcEEeccCCccc
Q 036411 391 PVQLGNLESLEFIDISENGLS 411 (487)
Q Consensus 391 ~~~~~~~~~L~~l~l~~~~~~ 411 (487)
+..+..+++|+.|++++|++.
T Consensus 388 ~~~~~~l~~L~~L~l~~N~l~ 408 (455)
T 3v47_A 388 DGIFDRLTSLQKIWLHTNPWD 408 (455)
T ss_dssp TTTTTTCTTCCEEECCSSCBC
T ss_pred HhHhccCCcccEEEccCCCcc
Confidence 444455555555555555554
|
| >1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-33 Score=271.47 Aligned_cols=394 Identities=22% Similarity=0.218 Sum_probs=196.6
Q ss_pred ccccccEEecCCccccccccccccCCCCCcEEEccCccccCCcccccccCCCCC-------------cEEECCCCccCCC
Q 036411 6 SLKQLKILNLGFNFFIDSILPYLNTLTSLTTLNLRYNKIEGSRTKQGICNLKNL-------------LELDLSSNNFEGH 72 (487)
Q Consensus 6 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L-------------~~L~l~~~~~~~~ 72 (487)
+.++|++|+++++.+ +.+|..++++++|++|++++|.+.+.. +..++++++| ++|+++++.++.
T Consensus 9 ~~~~L~~L~l~~n~l-~~iP~~i~~L~~L~~L~l~~n~~~~~~-p~~~~~l~~L~~l~l~~c~~~~l~~L~l~~~~l~~- 85 (454)
T 1jl5_A 9 SNTFLQEPLRHSSNL-TEMPVEAENVKSKTEYYNAWSEWERNA-PPGNGEQREMAVSRLRDCLDRQAHELELNNLGLSS- 85 (454)
T ss_dssp --------------------------CCHHHHHHHHHHHHHTS-CTTSCCCHHHHHHHHHHHHHHTCSEEECTTSCCSC-
T ss_pred ccccchhhhcccCch-hhCChhHhcccchhhhhccCCcccccC-CcccccchhcchhhhhhhhccCCCEEEecCCcccc-
Confidence 457899999999887 678888999999999999999876443 4557777765 888888887763
Q ss_pred cchhccCCCCccEEeccCccccCCccccccCCCCCcEEeccccccCcchhHHHhhccccceEEEeccCCCcccccccccc
Q 036411 73 LPQCLNNLTHLKVLDISYNQLSGNFPSVLTNLTSLEYLDLSFIDFQGTFLINSLANHSKLEVLVLSSGNDMLQVKTENWL 152 (487)
Q Consensus 73 ~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~ 152 (487)
+|. -.++|++|++++|.++. +|.. .++|++|++++|.+.+.. ..
T Consensus 86 lp~---~~~~L~~L~l~~n~l~~-lp~~---~~~L~~L~l~~n~l~~l~------~~----------------------- 129 (454)
T 1jl5_A 86 LPE---LPPHLESLVASCNSLTE-LPEL---PQSLKSLLVDNNNLKALS------DL----------------------- 129 (454)
T ss_dssp CCS---CCTTCSEEECCSSCCSS-CCCC---CTTCCEEECCSSCCSCCC------SC-----------------------
T ss_pred CCC---CcCCCCEEEccCCcCCc-cccc---cCCCcEEECCCCccCccc------CC-----------------------
Confidence 343 13678888888887774 4432 367888888777665310 00
Q ss_pred CCCCCceeecccccccccccccccCCcccEEeCCCCcccCCcchHhhhcCCCCcEEEcccCCCCCCCCCCCCcCCCCCcE
Q 036411 153 PTYPLKVLQLSHCHLNVNSSFLLHQHHLKFLDLSHNQLVGNFPTWLLQNNTGLEVLILWNNSFSGILPRLPNAKYDKLRH 232 (487)
Q Consensus 153 ~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~ 232 (487)
.++|++|++++|.++.++ .+..+++|++|++++|.+. .++. ..++|++|++++|.+.... .+..+++|+.
T Consensus 130 -~~~L~~L~L~~n~l~~lp-~~~~l~~L~~L~l~~N~l~-~lp~----~~~~L~~L~L~~n~l~~l~---~~~~l~~L~~ 199 (454)
T 1jl5_A 130 -PPLLEYLGVSNNQLEKLP-ELQNSSFLKIIDVDNNSLK-KLPD----LPPSLEFIAAGNNQLEELP---ELQNLPFLTA 199 (454)
T ss_dssp -CTTCCEEECCSSCCSSCC-CCTTCTTCCEEECCSSCCS-CCCC----CCTTCCEEECCSSCCSSCC---CCTTCTTCCE
T ss_pred -CCCCCEEECcCCCCCCCc-ccCCCCCCCEEECCCCcCc-ccCC----CcccccEEECcCCcCCcCc---cccCCCCCCE
Confidence 035666666666665444 3556666666666666655 2332 2346666666666655432 2356666666
Q ss_pred EEccCCcccccCCcccccccCceEEEEccCCCCCCCcchhhhccccCcEEecccccCCCCCchhhhcCCCCCcEEECCCC
Q 036411 233 LDISTNNFSGKLPENLGIVFQKLIYLDVSKNSFEGNIPYSISEMKELITLDLSRNNFSGELPRSIFSSCLSLETLDLSNN 312 (487)
Q Consensus 233 L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~ 312 (487)
|++++|.+.+ ++.. +++|++|++++|.+. ..+ .+..+++|+.|++++|.+. .+|. .+++|+.|++++|
T Consensus 200 L~l~~N~l~~-l~~~----~~~L~~L~l~~n~l~-~lp-~~~~l~~L~~L~l~~N~l~-~l~~----~~~~L~~L~l~~N 267 (454)
T 1jl5_A 200 IYADNNSLKK-LPDL----PLSLESIVAGNNILE-ELP-ELQNLPFLTTIYADNNLLK-TLPD----LPPSLEALNVRDN 267 (454)
T ss_dssp EECCSSCCSS-CCCC----CTTCCEEECCSSCCS-SCC-CCTTCTTCCEEECCSSCCS-SCCS----CCTTCCEEECCSS
T ss_pred EECCCCcCCc-CCCC----cCcccEEECcCCcCC-ccc-ccCCCCCCCEEECCCCcCC-cccc----cccccCEEECCCC
Confidence 6666666552 2321 246667777776665 333 3566666777777766665 4443 1356677777766
Q ss_pred ccCCCCCcCCcCCCCccEEEcCCCcccccccccccCCCcccEEEccCCccCCCchhhhccc-ccccEEecCCccccCcch
Q 036411 313 NFYGQLFPNFMNLTHLSSLRLNNNHFSGKMADGLLSSTLLDVLDVSNNKLSGDIPHWIGNF-SVLWLLLMSENYLQGSIP 391 (487)
Q Consensus 313 ~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~-~~L~~L~l~~~~~~~~~~ 391 (487)
.+.+. +. .+++|+.|++++|.+.+. +. ..++|+.|++++|++++ ++ .. ++|++|++++|.+++ .|
T Consensus 268 ~l~~l-~~---~~~~L~~L~ls~N~l~~l-~~---~~~~L~~L~l~~N~l~~-i~----~~~~~L~~L~Ls~N~l~~-lp 333 (454)
T 1jl5_A 268 YLTDL-PE---LPQSLTFLDVSENIFSGL-SE---LPPNLYYLNASSNEIRS-LC----DLPPSLEELNVSNNKLIE-LP 333 (454)
T ss_dssp CCSCC-CC---CCTTCCEEECCSSCCSEE-SC---CCTTCCEEECCSSCCSE-EC----CCCTTCCEEECCSSCCSC-CC
T ss_pred ccccc-Cc---ccCcCCEEECcCCccCcc-cC---cCCcCCEEECcCCcCCc-cc----CCcCcCCEEECCCCcccc-cc
Confidence 66542 21 135666777776666531 11 12466667776666653 11 12 366666776666653 33
Q ss_pred hhhccCcCCcEEeccCCccccccccccCCCcceEEEeeCcccCC--cchHhhhcc-------------CcceEEeCCCCc
Q 036411 392 VQLGNLESLEFIDISENGLSVSMVSLSNLSSVKHIYLHNNAING--LIPIALLRS-------------STLLTLDLRDNK 456 (487)
Q Consensus 392 ~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~--~~~~~~~~~-------------~~L~~L~l~~~~ 456 (487)
.. +++|+.|++++|.++..+. .+++|++|++++|.+++ ..|..+..+ ++|+.|++++|+
T Consensus 334 ~~---~~~L~~L~L~~N~l~~lp~---~l~~L~~L~L~~N~l~~l~~ip~~l~~L~~n~~~~~i~~~~~~L~~L~ls~N~ 407 (454)
T 1jl5_A 334 AL---PPRLERLIASFNHLAEVPE---LPQNLKQLHVEYNPLREFPDIPESVEDLRMNSHLAEVPELPQNLKQLHVETNP 407 (454)
T ss_dssp CC---CTTCCEEECCSSCCSCCCC---CCTTCCEEECCSSCCSSCCCCCTTCCEEECCC---------------------
T ss_pred cc---CCcCCEEECCCCccccccc---hhhhccEEECCCCCCCcCCCChHHHHhhhhcccccccccccCcCCEEECCCCc
Confidence 22 3566667776666654333 35666677776666665 344444444 678888888888
Q ss_pred ccc--cCcccccccCceeEEeccCCccCCCCC
Q 036411 457 FFG--RIPHQINELSNLHFLLLRGNSLQGRIP 486 (487)
Q Consensus 457 ~~~--~~~~~l~~l~~L~~L~l~~~~~~~~~p 486 (487)
+++ .+| ++++.|.+.+|.+.+.+|
T Consensus 408 l~~~~~iP------~sl~~L~~~~~~~~~~~~ 433 (454)
T 1jl5_A 408 LREFPDIP------ESVEDLRMNSERVVDPYE 433 (454)
T ss_dssp --------------------------------
T ss_pred CCccccch------hhHhheeCcCcccCCccc
Confidence 764 333 256667777777766654
|
| >1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.7e-32 Score=266.14 Aligned_cols=346 Identities=27% Similarity=0.301 Sum_probs=231.3
Q ss_pred CCCCcEEEccCccccCCcccccccCCCCCcEEECCCCccCCCcchhccCCCCccEEeccCccccCCccccccCCCCCcEE
Q 036411 31 LTSLTTLNLRYNKIEGSRTKQGICNLKNLLELDLSSNNFEGHLPQCLNNLTHLKVLDISYNQLSGNFPSVLTNLTSLEYL 110 (487)
Q Consensus 31 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L 110 (487)
+++++.|+++++.+... ..+..+++|++|++++|.+.+. +. +.++++|++|++++|.++...+ +.++++|++|
T Consensus 45 l~~l~~L~l~~~~i~~l---~~~~~l~~L~~L~Ls~n~l~~~-~~-~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L 117 (466)
T 1o6v_A 45 LDQVTTLQADRLGIKSI---DGVEYLNNLTQINFSNNQLTDI-TP-LKNLTKLVDILMNNNQIADITP--LANLTNLTGL 117 (466)
T ss_dssp HHTCCEEECCSSCCCCC---TTGGGCTTCCEEECCSSCCCCC-GG-GTTCTTCCEEECCSSCCCCCGG--GTTCTTCCEE
T ss_pred hccccEEecCCCCCccC---cchhhhcCCCEEECCCCccCCc-hh-hhccccCCEEECCCCccccChh--hcCCCCCCEE
Confidence 45677777776666522 1366667777777777766633 22 6667777777777776664433 6666777777
Q ss_pred eccccccCcchhHHHhhccccceEEEeccCCCccccccccccCCCCCceeecccccccccccccccCCcccEEeCCCCcc
Q 036411 111 DLSFIDFQGTFLINSLANHSKLEVLVLSSGNDMLQVKTENWLPTYPLKVLQLSHCHLNVNSSFLLHQHHLKFLDLSHNQL 190 (487)
Q Consensus 111 ~l~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 190 (487)
++++|.+.+. +. +..+++|++|++++|.+...+ .+..+++|+.|+++ +.+
T Consensus 118 ~L~~n~l~~~--------------------------~~--~~~l~~L~~L~l~~n~l~~~~-~~~~l~~L~~L~l~-~~~ 167 (466)
T 1o6v_A 118 TLFNNQITDI--------------------------DP--LKNLTNLNRLELSSNTISDIS-ALSGLTSLQQLSFG-NQV 167 (466)
T ss_dssp ECCSSCCCCC--------------------------GG--GTTCTTCSEEEEEEEEECCCG-GGTTCTTCSEEEEE-ESC
T ss_pred ECCCCCCCCC--------------------------hH--HcCCCCCCEEECCCCccCCCh-hhccCCcccEeecC-Ccc
Confidence 7766655421 11 455567777777777775554 36778888888885 333
Q ss_pred cCCcchHhhhcCCCCcEEEcccCCCCCCCCCCCCcCCCCCcEEEccCCcccccCCcccccccCceEEEEccCCCCCCCcc
Q 036411 191 VGNFPTWLLQNNTGLEVLILWNNSFSGILPRLPNAKYDKLRHLDISTNNFSGKLPENLGIVFQKLIYLDVSKNSFEGNIP 270 (487)
Q Consensus 191 ~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~ 270 (487)
. .... +..+++|+.|++++|.+.... .+..+++|+.|++++|.+.+..+ ...+++|++|++++|.+.+.
T Consensus 168 ~-~~~~--~~~l~~L~~L~l~~n~l~~~~---~l~~l~~L~~L~l~~n~l~~~~~---~~~l~~L~~L~l~~n~l~~~-- 236 (466)
T 1o6v_A 168 T-DLKP--LANLTTLERLDISSNKVSDIS---VLAKLTNLESLIATNNQISDITP---LGILTNLDELSLNGNQLKDI-- 236 (466)
T ss_dssp C-CCGG--GTTCTTCCEEECCSSCCCCCG---GGGGCTTCSEEECCSSCCCCCGG---GGGCTTCCEEECCSSCCCCC--
T ss_pred c-Cchh--hccCCCCCEEECcCCcCCCCh---hhccCCCCCEEEecCCccccccc---ccccCCCCEEECCCCCcccc--
Confidence 3 2222 557788888888888765442 24667788888888887764332 22357788888888877643
Q ss_pred hhhhccccCcEEecccccCCCCCchhhhcCCCCCcEEECCCCccCCCCCcCCcCCCCccEEEcCCCcccccccccccCCC
Q 036411 271 YSISEMKELITLDLSRNNFSGELPRSIFSSCLSLETLDLSNNNFYGQLFPNFMNLTHLSSLRLNNNHFSGKMADGLLSST 350 (487)
Q Consensus 271 ~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~ 350 (487)
..+..+++|+.|++++|.+. .++. +..+++|+.|++++|.+.+..+ +..+++|+.|++++|.+.+..+ +..++
T Consensus 237 ~~l~~l~~L~~L~l~~n~l~-~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~--~~~l~ 309 (466)
T 1o6v_A 237 GTLASLTNLTDLDLANNQIS-NLAP--LSGLTKLTELKLGANQISNISP--LAGLTALTNLELNENQLEDISP--ISNLK 309 (466)
T ss_dssp GGGGGCTTCSEEECCSSCCC-CCGG--GTTCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCSCCGG--GGGCT
T ss_pred hhhhcCCCCCEEECCCCccc-cchh--hhcCCCCCEEECCCCccCcccc--ccCCCccCeEEcCCCcccCchh--hcCCC
Confidence 34667778888888888776 4443 5677788888888887765332 6677788888888877764333 56677
Q ss_pred cccEEEccCCccCCCchhhhcccccccEEecCCccccCcchhhhccCcCCcEEeccCCccccccccccCCCcceEEEeeC
Q 036411 351 LLDVLDVSNNKLSGDIPHWIGNFSVLWLLLMSENYLQGSIPVQLGNLESLEFIDISENGLSVSMVSLSNLSSVKHIYLHN 430 (487)
Q Consensus 351 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~ 430 (487)
+|+.|++++|++++..+ +..+++|++|++++|.+.+. ..+..+++|+.|++++|++....+ +..+++|+.|++++
T Consensus 310 ~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~l~~ 384 (466)
T 1o6v_A 310 NLTYLTLYFNNISDISP--VSSLTKLQRLFFYNNKVSDV--SSLANLTNINWLSAGHNQISDLTP-LANLTRITQLGLND 384 (466)
T ss_dssp TCSEEECCSSCCSCCGG--GGGCTTCCEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCCBCGG-GTTCTTCCEEECCC
T ss_pred CCCEEECcCCcCCCchh--hccCccCCEeECCCCccCCc--hhhccCCCCCEEeCCCCccCccch-hhcCCCCCEEeccC
Confidence 78888888887776554 66777788888887777643 356677778888888777764444 66777777888777
Q ss_pred cccCCc
Q 036411 431 NAINGL 436 (487)
Q Consensus 431 ~~~~~~ 436 (487)
|.+++.
T Consensus 385 n~~~~~ 390 (466)
T 1o6v_A 385 QAWTNA 390 (466)
T ss_dssp EEEECC
T ss_pred CcccCC
Confidence 777753
|
| >1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A | Back alignment and structure |
|---|
Probab=100.00 E-value=4.2e-32 Score=263.37 Aligned_cols=347 Identities=26% Similarity=0.310 Sum_probs=235.3
Q ss_pred ccccccEEecCCccccccccccccCCCCCcEEEccCccccCCcccccccCCCCCcEEECCCCccCCCcchhccCCCCccE
Q 036411 6 SLKQLKILNLGFNFFIDSILPYLNTLTSLTTLNLRYNKIEGSRTKQGICNLKNLLELDLSSNNFEGHLPQCLNNLTHLKV 85 (487)
Q Consensus 6 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~ 85 (487)
.+++++.|++.++.+... + .+..+++|++|++++|.+.+.. . +.++++|++|++++|.+....+ +.++++|++
T Consensus 44 ~l~~l~~L~l~~~~i~~l-~-~~~~l~~L~~L~Ls~n~l~~~~--~-~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~ 116 (466)
T 1o6v_A 44 DLDQVTTLQADRLGIKSI-D-GVEYLNNLTQINFSNNQLTDIT--P-LKNLTKLVDILMNNNQIADITP--LANLTNLTG 116 (466)
T ss_dssp HHHTCCEEECCSSCCCCC-T-TGGGCTTCCEEECCSSCCCCCG--G-GTTCTTCCEEECCSSCCCCCGG--GTTCTTCCE
T ss_pred HhccccEEecCCCCCccC-c-chhhhcCCCEEECCCCccCCch--h-hhccccCCEEECCCCccccChh--hcCCCCCCE
Confidence 468999999999976553 3 4888999999999999987443 2 9999999999999999985544 899999999
Q ss_pred EeccCccccCCccccccCCCCCcEEeccccccCcchhHHHhhccccceEEEeccCCCccccccccccCCCCCceeecccc
Q 036411 86 LDISYNQLSGNFPSVLTNLTSLEYLDLSFIDFQGTFLINSLANHSKLEVLVLSSGNDMLQVKTENWLPTYPLKVLQLSHC 165 (487)
Q Consensus 86 L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~ 165 (487)
|++++|.++...+ +..+++|++|++++|.+... ..+..+++|+++.+.. ...... .+..+++|+.|++++|
T Consensus 117 L~L~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~---~~~~~l~~L~~L~l~~--~~~~~~--~~~~l~~L~~L~l~~n 187 (466)
T 1o6v_A 117 LTLFNNQITDIDP--LKNLTNLNRLELSSNTISDI---SALSGLTSLQQLSFGN--QVTDLK--PLANLTTLERLDISSN 187 (466)
T ss_dssp EECCSSCCCCCGG--GTTCTTCSEEEEEEEEECCC---GGGTTCTTCSEEEEEE--SCCCCG--GGTTCTTCCEEECCSS
T ss_pred EECCCCCCCCChH--HcCCCCCCEEECCCCccCCC---hhhccCCcccEeecCC--cccCch--hhccCCCCCEEECcCC
Confidence 9999999886533 88999999999999987753 2467777788777742 111111 1344445555555554
Q ss_pred cccccccccccCCcccEEeCCCCcccCCcchHhhhcCCCCcEEEcccCCCCCCCCCCCCcCCCCCcEEEccCCcccccCC
Q 036411 166 HLNVNSSFLLHQHHLKFLDLSHNQLVGNFPTWLLQNNTGLEVLILWNNSFSGILPRLPNAKYDKLRHLDISTNNFSGKLP 245 (487)
Q Consensus 166 ~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~ 245 (487)
.+...+ .+. .+++|++|++++|.+....+ ...+++|+.|++++|.+.+ ++
T Consensus 188 ~l~~~~-~l~-------------------------~l~~L~~L~l~~n~l~~~~~---~~~l~~L~~L~l~~n~l~~-~~ 237 (466)
T 1o6v_A 188 KVSDIS-VLA-------------------------KLTNLESLIATNNQISDITP---LGILTNLDELSLNGNQLKD-IG 237 (466)
T ss_dssp CCCCCG-GGG-------------------------GCTTCSEEECCSSCCCCCGG---GGGCTTCCEEECCSSCCCC-CG
T ss_pred cCCCCh-hhc-------------------------cCCCCCEEEecCCccccccc---ccccCCCCEEECCCCCccc-ch
Confidence 443322 233 44455555555444433222 2345556666666555542 11
Q ss_pred cccccccCceEEEEccCCCCCCCcchhhhccccCcEEecccccCCCCCchhhhcCCCCCcEEECCCCccCCCCCcCCcCC
Q 036411 246 ENLGIVFQKLIYLDVSKNSFEGNIPYSISEMKELITLDLSRNNFSGELPRSIFSSCLSLETLDLSNNNFYGQLFPNFMNL 325 (487)
Q Consensus 246 ~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~ 325 (487)
. ...+++|++|++++|.+.+..+ +..+++|+.|++++|.+. .++. +..+++|+.|++++|.+.+.. .+..+
T Consensus 238 -~-l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~-~~~~--~~~l~~L~~L~L~~n~l~~~~--~~~~l 308 (466)
T 1o6v_A 238 -T-LASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQIS-NISP--LAGLTALTNLELNENQLEDIS--PISNL 308 (466)
T ss_dssp -G-GGGCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCC-CCGG--GTTCTTCSEEECCSSCCSCCG--GGGGC
T ss_pred -h-hhcCCCCCEEECCCCccccchh--hhcCCCCCEEECCCCccC-cccc--ccCCCccCeEEcCCCcccCch--hhcCC
Confidence 1 2234667777777777664433 666777777777777776 4444 566777777777777775433 25667
Q ss_pred CCccEEEcCCCcccccccccccCCCcccEEEccCCccCCCchhhhcccccccEEecCCccccCcchhhhccCcCCcEEec
Q 036411 326 THLSSLRLNNNHFSGKMADGLLSSTLLDVLDVSNNKLSGDIPHWIGNFSVLWLLLMSENYLQGSIPVQLGNLESLEFIDI 405 (487)
Q Consensus 326 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l 405 (487)
++|+.|++++|.+.+..+ +..+++|+.|++++|++++. ..+..+++|+.|++++|.+.+..| +..+++|+.|++
T Consensus 309 ~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l 382 (466)
T 1o6v_A 309 KNLTYLTLYFNNISDISP--VSSLTKLQRLFFYNNKVSDV--SSLANLTNINWLSAGHNQISDLTP--LANLTRITQLGL 382 (466)
T ss_dssp TTCSEEECCSSCCSCCGG--GGGCTTCCEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCCBCGG--GTTCTTCCEEEC
T ss_pred CCCCEEECcCCcCCCchh--hccCccCCEeECCCCccCCc--hhhccCCCCCEEeCCCCccCccch--hhcCCCCCEEec
Confidence 777777777777764443 56677788888888877654 456777888888888887775554 677788888888
Q ss_pred cCCccccc
Q 036411 406 SENGLSVS 413 (487)
Q Consensus 406 ~~~~~~~~ 413 (487)
++|+++..
T Consensus 383 ~~n~~~~~ 390 (466)
T 1o6v_A 383 NDQAWTNA 390 (466)
T ss_dssp CCEEEECC
T ss_pred cCCcccCC
Confidence 88877643
|
| >1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A | Back alignment and structure |
|---|
Probab=100.00 E-value=9.3e-33 Score=265.31 Aligned_cols=376 Identities=23% Similarity=0.256 Sum_probs=248.0
Q ss_pred CCCCcEEEccCccccCCcccccccCCCCCcEEECCCCccCCCcchhccCCCCc-------------cEEeccCccccCCc
Q 036411 31 LTSLTTLNLRYNKIEGSRTKQGICNLKNLLELDLSSNNFEGHLPQCLNNLTHL-------------KVLDISYNQLSGNF 97 (487)
Q Consensus 31 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L-------------~~L~l~~~~~~~~~ 97 (487)
.+.|+.|+++++.++ ..|..++++++|++|++++|.+....|..++++.+| ++|++++|.++. +
T Consensus 10 ~~~L~~L~l~~n~l~--~iP~~i~~L~~L~~L~l~~n~~~~~~p~~~~~l~~L~~l~l~~c~~~~l~~L~l~~~~l~~-l 86 (454)
T 1jl5_A 10 NTFLQEPLRHSSNLT--EMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLDRQAHELELNNLGLSS-L 86 (454)
T ss_dssp --------------------------CCHHHHHHHHHHHHHTSCTTSCCCHHHHHHHHHHHHHHTCSEEECTTSCCSC-C
T ss_pred cccchhhhcccCchh--hCChhHhcccchhhhhccCCcccccCCcccccchhcchhhhhhhhccCCCEEEecCCcccc-C
Confidence 467788888888774 344567888888888888877766677777777665 555555554442 2
Q ss_pred cccccCCCCCcEEeccccccCcchhHHHhhccccceEEEeccCCCccccccccccCCCCCceeecccccccccccccccC
Q 036411 98 PSVLTNLTSLEYLDLSFIDFQGTFLINSLANHSKLEVLVLSSGNDMLQVKTENWLPTYPLKVLQLSHCHLNVNSSFLLHQ 177 (487)
Q Consensus 98 ~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~ 177 (487)
|.. .++|++|++++|.+.+ ++. ..++|+.|++++|.+..++.. .
T Consensus 87 p~~---~~~L~~L~l~~n~l~~--------------------------lp~----~~~~L~~L~l~~n~l~~l~~~---~ 130 (454)
T 1jl5_A 87 PEL---PPHLESLVASCNSLTE--------------------------LPE----LPQSLKSLLVDNNNLKALSDL---P 130 (454)
T ss_dssp CSC---CTTCSEEECCSSCCSS--------------------------CCC----CCTTCCEEECCSSCCSCCCSC---C
T ss_pred CCC---cCCCCEEEccCCcCCc--------------------------ccc----ccCCCcEEECCCCccCcccCC---C
Confidence 221 2445555555444331 221 125789999998887665543 2
Q ss_pred CcccEEeCCCCcccCCcchHhhhcCCCCcEEEcccCCCCCCCCCCCCcCCCCCcEEEccCCcccccCCcccccccCceEE
Q 036411 178 HHLKFLDLSHNQLVGNFPTWLLQNNTGLEVLILWNNSFSGILPRLPNAKYDKLRHLDISTNNFSGKLPENLGIVFQKLIY 257 (487)
Q Consensus 178 ~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~ 257 (487)
++|++|++++|.+.+ ++. +..+++|++|++++|.+..... ..++|+.|++++|.+.+ ++ .+ ..+++|++
T Consensus 131 ~~L~~L~L~~n~l~~-lp~--~~~l~~L~~L~l~~N~l~~lp~-----~~~~L~~L~L~~n~l~~-l~-~~-~~l~~L~~ 199 (454)
T 1jl5_A 131 PLLEYLGVSNNQLEK-LPE--LQNSSFLKIIDVDNNSLKKLPD-----LPPSLEFIAAGNNQLEE-LP-EL-QNLPFLTA 199 (454)
T ss_dssp TTCCEEECCSSCCSS-CCC--CTTCTTCCEEECCSSCCSCCCC-----CCTTCCEEECCSSCCSS-CC-CC-TTCTTCCE
T ss_pred CCCCEEECcCCCCCC-Ccc--cCCCCCCCEEECCCCcCcccCC-----CcccccEEECcCCcCCc-Cc-cc-cCCCCCCE
Confidence 799999999999884 663 6789999999999998875322 23589999999999884 55 33 45689999
Q ss_pred EEccCCCCCCCcchhhhccccCcEEecccccCCCCCchhhhcCCCCCcEEECCCCccCCCCCcCCcCCCCccEEEcCCCc
Q 036411 258 LDVSKNSFEGNIPYSISEMKELITLDLSRNNFSGELPRSIFSSCLSLETLDLSNNNFYGQLFPNFMNLTHLSSLRLNNNH 337 (487)
Q Consensus 258 L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 337 (487)
|++++|.+.+ .+. ..++|+.|++++|.+. .+|. +..+++|++|++++|.+.+. +. .+++|+.|++++|.
T Consensus 200 L~l~~N~l~~-l~~---~~~~L~~L~l~~n~l~-~lp~--~~~l~~L~~L~l~~N~l~~l-~~---~~~~L~~L~l~~N~ 268 (454)
T 1jl5_A 200 IYADNNSLKK-LPD---LPLSLESIVAGNNILE-ELPE--LQNLPFLTTIYADNNLLKTL-PD---LPPSLEALNVRDNY 268 (454)
T ss_dssp EECCSSCCSS-CCC---CCTTCCEEECCSSCCS-SCCC--CTTCTTCCEEECCSSCCSSC-CS---CCTTCCEEECCSSC
T ss_pred EECCCCcCCc-CCC---CcCcccEEECcCCcCC-cccc--cCCCCCCCEEECCCCcCCcc-cc---cccccCEEECCCCc
Confidence 9999999874 332 2368999999999998 8884 68899999999999998753 22 24899999999999
Q ss_pred ccccccccccCCCcccEEEccCCccCCCchhhhcccccccEEecCCccccCcchhhhccC-cCCcEEeccCCcccccccc
Q 036411 338 FSGKMADGLLSSTLLDVLDVSNNKLSGDIPHWIGNFSVLWLLLMSENYLQGSIPVQLGNL-ESLEFIDISENGLSVSMVS 416 (487)
Q Consensus 338 ~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~-~~L~~l~l~~~~~~~~~~~ 416 (487)
+.+ .+.. .++|+.|++++|++++ ++. ..++|++|++++|.+.+ .+ .. ++|+.|++++|+++..+.
T Consensus 269 l~~-l~~~---~~~L~~L~ls~N~l~~-l~~---~~~~L~~L~l~~N~l~~-i~----~~~~~L~~L~Ls~N~l~~lp~- 334 (454)
T 1jl5_A 269 LTD-LPEL---PQSLTFLDVSENIFSG-LSE---LPPNLYYLNASSNEIRS-LC----DLPPSLEELNVSNNKLIELPA- 334 (454)
T ss_dssp CSC-CCCC---CTTCCEEECCSSCCSE-ESC---CCTTCCEEECCSSCCSE-EC----CCCTTCCEEECCSSCCSCCCC-
T ss_pred ccc-cCcc---cCcCCEEECcCCccCc-ccC---cCCcCCEEECcCCcCCc-cc----CCcCcCCEEECCCCccccccc-
Confidence 874 3332 4789999999999874 221 12689999999998874 22 33 589999999999875443
Q ss_pred ccCCCcceEEEeeCcccCCcchHhhhccCcceEEeCCCCcccc--cCccccccc-------------CceeEEeccCCcc
Q 036411 417 LSNLSSVKHIYLHNNAINGLIPIALLRSSTLLTLDLRDNKFFG--RIPHQINEL-------------SNLHFLLLRGNSL 481 (487)
Q Consensus 417 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~--~~~~~l~~l-------------~~L~~L~l~~~~~ 481 (487)
.+++|++|++++|.++.... .+++|+.|++++|++++ .+|..++++ ++|+.|++++|++
T Consensus 335 --~~~~L~~L~L~~N~l~~lp~----~l~~L~~L~L~~N~l~~l~~ip~~l~~L~~n~~~~~i~~~~~~L~~L~ls~N~l 408 (454)
T 1jl5_A 335 --LPPRLERLIASFNHLAEVPE----LPQNLKQLHVEYNPLREFPDIPESVEDLRMNSHLAEVPELPQNLKQLHVETNPL 408 (454)
T ss_dssp --CCTTCCEEECCSSCCSCCCC----CCTTCCEEECCSSCCSSCCCCCTTCCEEECCC----------------------
T ss_pred --cCCcCCEEECCCCccccccc----hhhhccEEECCCCCCCcCCCChHHHHhhhhcccccccccccCcCCEEECCCCcC
Confidence 35899999999999996543 46899999999999987 788888888 8999999999999
Q ss_pred CC--CCCC
Q 036411 482 QG--RIPN 487 (487)
Q Consensus 482 ~~--~~p~ 487 (487)
++ .+|.
T Consensus 409 ~~~~~iP~ 416 (454)
T 1jl5_A 409 REFPDIPE 416 (454)
T ss_dssp --------
T ss_pred Cccccchh
Confidence 97 7773
|
| >2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-32 Score=268.60 Aligned_cols=300 Identities=21% Similarity=0.171 Sum_probs=209.1
Q ss_pred CCCceeeccccccccc-ccccccCCcccEEeCCCCcccCCcchHhhhcCCCCcEEEcccCCCCCCCCCCCCcCCCCCcEE
Q 036411 155 YPLKVLQLSHCHLNVN-SSFLLHQHHLKFLDLSHNQLVGNFPTWLLQNNTGLEVLILWNNSFSGILPRLPNAKYDKLRHL 233 (487)
Q Consensus 155 ~~L~~L~l~~~~~~~~-~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L 233 (487)
+.++.|+++++.+... +..+..+++|+.|++++|.+. .+....+..+++|++|++++|.+...... .+..+++|+.|
T Consensus 32 ~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~-~~~~l~~L~~L 109 (477)
T 2id5_A 32 TETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVS-AVEPGAFNNLFNLRTLGLRSNRLKLIPLG-VFTGLSNLTKL 109 (477)
T ss_dssp TTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCC-EECTTTTTTCTTCCEEECCSSCCCSCCTT-SSTTCTTCCEE
T ss_pred CCCcEEECCCCccceECHhHccCCCCCCEEECCCCccC-EeChhhhhCCccCCEEECCCCcCCccCcc-cccCCCCCCEE
Confidence 3677888888777444 456777788888888888776 34334455777888888877776654433 34667778888
Q ss_pred EccCCcccccCCcccccccCceEEEEccCCCCCCCcchhhhccccCcEEecccccCCCCCchhhhcCCCCCcEEECCCCc
Q 036411 234 DISTNNFSGKLPENLGIVFQKLIYLDVSKNSFEGNIPYSISEMKELITLDLSRNNFSGELPRSIFSSCLSLETLDLSNNN 313 (487)
Q Consensus 234 ~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 313 (487)
++++|.+....+..+ ..+++|++|++++|.+.+..+..+..+++|+.|++++|.+. .++...|..+++|+.|++.+|.
T Consensus 110 ~Ls~n~i~~~~~~~~-~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~~~~~~l~~l~~L~~L~l~~n~ 187 (477)
T 2id5_A 110 DISENKIVILLDYMF-QDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLT-SIPTEALSHLHGLIVLRLRHLN 187 (477)
T ss_dssp ECTTSCCCEECTTTT-TTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCS-SCCHHHHTTCTTCCEEEEESCC
T ss_pred ECCCCccccCChhHc-cccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCc-ccChhHhcccCCCcEEeCCCCc
Confidence 888777764433333 34567888888877776555666777777888888777776 6666667777778888887777
Q ss_pred cCCCCCcCCcCCCCccEEEcCCCcccccccccccCCCcccEEEccCCccCCCchhhhcccccccEEecCCccccCcchhh
Q 036411 314 FYGQLFPNFMNLTHLSSLRLNNNHFSGKMADGLLSSTLLDVLDVSNNKLSGDIPHWIGNFSVLWLLLMSENYLQGSIPVQ 393 (487)
Q Consensus 314 ~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~ 393 (487)
+.+.....+..+++|+.|++++|...+..+.......+|++|++++|+++...+..+..+++|++|++++|.+....+..
T Consensus 188 i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~ 267 (477)
T 2id5_A 188 INAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTIEGSM 267 (477)
T ss_dssp CCEECTTCSCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESSCCCSCCHHHHTTCTTCCEEECCSSCCCEECTTS
T ss_pred CcEeChhhcccCcccceeeCCCCccccccCcccccCccccEEECcCCcccccCHHHhcCccccCeeECCCCcCCccChhh
Confidence 76666666777777777777777665555555555557777777777777555566777777777777777777555566
Q ss_pred hccCcCCcEEeccCCccccc-cccccCCCcceEEEeeCcccCCcchHhhhccCcceEEeCCCCccc
Q 036411 394 LGNLESLEFIDISENGLSVS-MVSLSNLSSVKHIYLHNNAINGLIPIALLRSSTLLTLDLRDNKFF 458 (487)
Q Consensus 394 ~~~~~~L~~l~l~~~~~~~~-~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 458 (487)
+..+++|+.|++++|++... +..+..+++|++|++++|.++...+..+..+++|+.|++++|++.
T Consensus 268 ~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~ 333 (477)
T 2id5_A 268 LHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLETLILDSNPLA 333 (477)
T ss_dssp CTTCTTCCEEECCSSCCSEECTTTBTTCTTCCEEECCSSCCSCCCGGGBSCGGGCCEEECCSSCEE
T ss_pred ccccccCCEEECCCCccceECHHHhcCcccCCEEECCCCcCceeCHhHcCCCcccCEEEccCCCcc
Confidence 77777777777777777533 445557777777777777777766666777777777777777764
|
| >4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.4e-31 Score=248.38 Aligned_cols=305 Identities=21% Similarity=0.266 Sum_probs=243.3
Q ss_pred CCCCCceeecccccccccccccccCCcccEEeCCCCcccCCcchHhhhcCCCCcEEEcccCCCCCCCCCCCCcCCCCCcE
Q 036411 153 PTYPLKVLQLSHCHLNVNSSFLLHQHHLKFLDLSHNQLVGNFPTWLLQNNTGLEVLILWNNSFSGILPRLPNAKYDKLRH 232 (487)
Q Consensus 153 ~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~ 232 (487)
.++++++|++.++.+..++. +..+++|++|++++|.+. .++. +..+++|++|++++|.+.... .+..+++|+.
T Consensus 42 ~l~~L~~L~l~~~~i~~~~~-~~~~~~L~~L~l~~n~i~-~~~~--~~~l~~L~~L~L~~n~i~~~~---~~~~l~~L~~ 114 (347)
T 4fmz_A 42 ELESITKLVVAGEKVASIQG-IEYLTNLEYLNLNGNQIT-DISP--LSNLVKLTNLYIGTNKITDIS---ALQNLTNLRE 114 (347)
T ss_dssp HHTTCSEEECCSSCCCCCTT-GGGCTTCCEEECCSSCCC-CCGG--GTTCTTCCEEECCSSCCCCCG---GGTTCTTCSE
T ss_pred hcccccEEEEeCCccccchh-hhhcCCccEEEccCCccc-cchh--hhcCCcCCEEEccCCcccCch---HHcCCCcCCE
Confidence 44567777777777655543 666788888888888776 3443 567888888888888776542 3467888999
Q ss_pred EEccCCcccccCCcccccccCceEEEEccCCCCCCCcchhhhccccCcEEecccccCCCCCchhhhcCCCCCcEEECCCC
Q 036411 233 LDISTNNFSGKLPENLGIVFQKLIYLDVSKNSFEGNIPYSISEMKELITLDLSRNNFSGELPRSIFSSCLSLETLDLSNN 312 (487)
Q Consensus 233 L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~ 312 (487)
|++++|.+.+ .+. ...+++|++|++++|...... ..+..+++|+.|++++|.+. .++. +..+++|+.|++++|
T Consensus 115 L~l~~n~i~~-~~~--~~~l~~L~~L~l~~n~~~~~~-~~~~~l~~L~~L~l~~~~~~-~~~~--~~~l~~L~~L~l~~n 187 (347)
T 4fmz_A 115 LYLNEDNISD-ISP--LANLTKMYSLNLGANHNLSDL-SPLSNMTGLNYLTVTESKVK-DVTP--IANLTDLYSLSLNYN 187 (347)
T ss_dssp EECTTSCCCC-CGG--GTTCTTCCEEECTTCTTCCCC-GGGTTCTTCCEEECCSSCCC-CCGG--GGGCTTCSEEECTTS
T ss_pred EECcCCcccC-chh--hccCCceeEEECCCCCCcccc-cchhhCCCCcEEEecCCCcC-Cchh--hccCCCCCEEEccCC
Confidence 9998888763 333 334688999999999655333 34788999999999999887 5554 678899999999999
Q ss_pred ccCCCCCcCCcCCCCccEEEcCCCcccccccccccCCCcccEEEccCCccCCCchhhhcccccccEEecCCccccCcchh
Q 036411 313 NFYGQLFPNFMNLTHLSSLRLNNNHFSGKMADGLLSSTLLDVLDVSNNKLSGDIPHWIGNFSVLWLLLMSENYLQGSIPV 392 (487)
Q Consensus 313 ~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~ 392 (487)
.+.+.. .+..+++|+.+++.+|.+.+... +..+++|++|++++|++++..+ +..+++|++|++++|.+... .
T Consensus 188 ~l~~~~--~~~~l~~L~~L~l~~n~l~~~~~--~~~~~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~ 259 (347)
T 4fmz_A 188 QIEDIS--PLASLTSLHYFTAYVNQITDITP--VANMTRLNSLKIGNNKITDLSP--LANLSQLTWLEIGTNQISDI--N 259 (347)
T ss_dssp CCCCCG--GGGGCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCC--G
T ss_pred cccccc--cccCCCccceeecccCCCCCCch--hhcCCcCCEEEccCCccCCCcc--hhcCCCCCEEECCCCccCCC--h
Confidence 886533 37788999999999998874443 7788999999999999885544 88999999999999988753 4
Q ss_pred hhccCcCCcEEeccCCccccccccccCCCcceEEEeeCcccCCcchHhhhccCcceEEeCCCCcccccCcccccccCcee
Q 036411 393 QLGNLESLEFIDISENGLSVSMVSLSNLSSVKHIYLHNNAINGLIPIALLRSSTLLTLDLRDNKFFGRIPHQINELSNLH 472 (487)
Q Consensus 393 ~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~ 472 (487)
.+..+++|+.|++++|++... ..+..+++|++|++++|.+++..+..+..+++|+.|++++|++++..| +..+++|+
T Consensus 260 ~~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~ 336 (347)
T 4fmz_A 260 AVKDLTKLKMLNVGSNQISDI-SVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRP--LASLSKMD 336 (347)
T ss_dssp GGTTCTTCCEEECCSSCCCCC-GGGGGCTTCSEEECCSSCCCGGGHHHHHTCTTCSEEECCSSSCCCCGG--GGGCTTCS
T ss_pred hHhcCCCcCEEEccCCccCCC-hhhcCCCCCCEEECcCCcCCCcChhHhhccccCCEEEccCCccccccC--hhhhhccc
Confidence 678899999999999998754 567789999999999999998888999999999999999999986655 89999999
Q ss_pred EEeccCCccC
Q 036411 473 FLLLRGNSLQ 482 (487)
Q Consensus 473 ~L~l~~~~~~ 482 (487)
+|++++|+|.
T Consensus 337 ~L~l~~N~i~ 346 (347)
T 4fmz_A 337 SADFANQVIK 346 (347)
T ss_dssp EESSSCC---
T ss_pred eeehhhhccc
Confidence 9999999986
|
| >3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=100.00 E-value=7.6e-32 Score=259.20 Aligned_cols=357 Identities=22% Similarity=0.207 Sum_probs=187.8
Q ss_pred cccccCCCCCcEEEccCccccCCcccccccCCCCCcEEECCCCccCCCcchhccCCCCccEEeccCccccCCccccccCC
Q 036411 25 LPYLNTLTSLTTLNLRYNKIEGSRTKQGICNLKNLLELDLSSNNFEGHLPQCLNNLTHLKVLDISYNQLSGNFPSVLTNL 104 (487)
Q Consensus 25 ~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~ 104 (487)
+..++.+++|++|+++++.+.+. + .+..+++|++|++++|.+... + +..+++|++|++++|.++.. + +..+
T Consensus 35 ~~~~~~l~~L~~L~Ls~n~l~~~--~-~l~~l~~L~~L~Ls~n~l~~~-~--~~~l~~L~~L~Ls~N~l~~~-~--~~~l 105 (457)
T 3bz5_A 35 TISEEQLATLTSLDCHNSSITDM--T-GIEKLTGLTKLICTSNNITTL-D--LSQNTNLTYLACDSNKLTNL-D--VTPL 105 (457)
T ss_dssp EEEHHHHTTCCEEECCSSCCCCC--T-TGGGCTTCSEEECCSSCCSCC-C--CTTCTTCSEEECCSSCCSCC-C--CTTC
T ss_pred ccChhHcCCCCEEEccCCCcccC--h-hhcccCCCCEEEccCCcCCeE-c--cccCCCCCEEECcCCCCcee-e--cCCC
Confidence 33456667777777777776643 2 466777777777777776642 2 66677777777777766643 2 5666
Q ss_pred CCCcEEeccccccCcchhHHHhhccccceEEEeccCCCccccccccccCCCCCceeecccccccccccccccCCcccEEe
Q 036411 105 TSLEYLDLSFIDFQGTFLINSLANHSKLEVLVLSSGNDMLQVKTENWLPTYPLKVLQLSHCHLNVNSSFLLHQHHLKFLD 184 (487)
Q Consensus 105 ~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~ 184 (487)
++|++|++++|.+.+. .+..+++|++|++++|.++.++ +..+++|+.|+
T Consensus 106 ~~L~~L~L~~N~l~~l-----------------------------~~~~l~~L~~L~l~~N~l~~l~--l~~l~~L~~L~ 154 (457)
T 3bz5_A 106 TKLTYLNCDTNKLTKL-----------------------------DVSQNPLLTYLNCARNTLTEID--VSHNTQLTELD 154 (457)
T ss_dssp TTCCEEECCSSCCSCC-----------------------------CCTTCTTCCEEECTTSCCSCCC--CTTCTTCCEEE
T ss_pred CcCCEEECCCCcCCee-----------------------------cCCCCCcCCEEECCCCccceec--cccCCcCCEEE
Confidence 7777777766655421 0334455666666666654442 55667777777
Q ss_pred CCCCcccCCcchHhhhcCCCCcEEEcccCCCCCCCCCCCCcCCCCCcEEEccCCcccccCCcccccccCceEEEEccCCC
Q 036411 185 LSHNQLVGNFPTWLLQNNTGLEVLILWNNSFSGILPRLPNAKYDKLRHLDISTNNFSGKLPENLGIVFQKLIYLDVSKNS 264 (487)
Q Consensus 185 l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 264 (487)
+++|...+.++ +..+++|+.|++++|.+... ....+++|+.|++++|.+.+. + ...+++|++|++++|.
T Consensus 155 l~~n~~~~~~~---~~~l~~L~~L~ls~n~l~~l----~l~~l~~L~~L~l~~N~l~~~-~---l~~l~~L~~L~Ls~N~ 223 (457)
T 3bz5_A 155 CHLNKKITKLD---VTPQTQLTTLDCSFNKITEL----DVSQNKLLNRLNCDTNNITKL-D---LNQNIQLTFLDCSSNK 223 (457)
T ss_dssp CTTCSCCCCCC---CTTCTTCCEEECCSSCCCCC----CCTTCTTCCEEECCSSCCSCC-C---CTTCTTCSEEECCSSC
T ss_pred CCCCCcccccc---cccCCcCCEEECCCCcccee----ccccCCCCCEEECcCCcCCee-c---cccCCCCCEEECcCCc
Confidence 77775443332 33556666666666665543 134555666666666655532 1 1223556666666665
Q ss_pred CCCCcchhhhccccCcEEecccccCCCCCchhhhcCCCCCcEEECCCCccCCCCCcCCcCCCCccEEEcCCCcccccccc
Q 036411 265 FEGNIPYSISEMKELITLDLSRNNFSGELPRSIFSSCLSLETLDLSNNNFYGQLFPNFMNLTHLSSLRLNNNHFSGKMAD 344 (487)
Q Consensus 265 ~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~ 344 (487)
+++ .+ +..+++|+.|++++|.+. .++. +.+++|+.+++.++ +|+.|++++|...+..+
T Consensus 224 l~~-ip--~~~l~~L~~L~l~~N~l~-~~~~---~~l~~L~~L~l~~n--------------~L~~L~l~~n~~~~~~~- 281 (457)
T 3bz5_A 224 LTE-ID--VTPLTQLTYFDCSVNPLT-ELDV---STLSKLTTLHCIQT--------------DLLEIDLTHNTQLIYFQ- 281 (457)
T ss_dssp CSC-CC--CTTCTTCSEEECCSSCCS-CCCC---TTCTTCCEEECTTC--------------CCSCCCCTTCTTCCEEE-
T ss_pred ccc-cC--ccccCCCCEEEeeCCcCC-CcCH---HHCCCCCEEeccCC--------------CCCEEECCCCccCCccc-
Confidence 553 22 445555666666666555 3332 33445555544433 23334444444333332
Q ss_pred cccCCCcccEEEccCCccCCCchhhhcccccccEEecCCccccCcchhhhccCcCCcEEeccCCccccccccccCCCcce
Q 036411 345 GLLSSTLLDVLDVSNNKLSGDIPHWIGNFSVLWLLLMSENYLQGSIPVQLGNLESLEFIDISENGLSVSMVSLSNLSSVK 424 (487)
Q Consensus 345 ~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~L~ 424 (487)
+..+++|+.|++++|...+.+|. ..++|+.++++ .+++|+.|++++|+++.. .+..+++|+
T Consensus 282 -~~~l~~L~~L~Ls~n~~l~~l~~---~~~~L~~L~l~-------------~~~~L~~L~L~~N~l~~l--~l~~l~~L~ 342 (457)
T 3bz5_A 282 -AEGCRKIKELDVTHNTQLYLLDC---QAAGITELDLS-------------QNPKLVYLYLNNTELTEL--DVSHNTKLK 342 (457)
T ss_dssp -CTTCTTCCCCCCTTCTTCCEEEC---TTCCCSCCCCT-------------TCTTCCEEECTTCCCSCC--CCTTCTTCS
T ss_pred -ccccccCCEEECCCCcccceecc---CCCcceEechh-------------hcccCCEEECCCCccccc--ccccCCcCc
Confidence 23455566666666654433332 11222222222 224555555555555432 244555555
Q ss_pred EEEeeCcccCCcchHhhhccCcceEEeCCCCcccccCcccccccCceeEEeccCCccCCCCC
Q 036411 425 HIYLHNNAINGLIPIALLRSSTLLTLDLRDNKFFGRIPHQINELSNLHFLLLRGNSLQGRIP 486 (487)
Q Consensus 425 ~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~p 486 (487)
.|++++|++++. +.|..|++++|.+.+. ..+..|+.+++++|.++|.+|
T Consensus 343 ~L~l~~N~l~~l--------~~L~~L~l~~n~l~g~-----~~~~~l~~l~l~~N~l~g~ip 391 (457)
T 3bz5_A 343 SLSCVNAHIQDF--------SSVGKIPALNNNFEAE-----GQTITMPKETLTNNSLTIAVS 391 (457)
T ss_dssp EEECCSSCCCBC--------TTGGGSSGGGTSEEEE-----EEEEECCCBCCBTTBEEEECC
T ss_pred EEECCCCCCCCc--------cccccccccCCcEEec-----ceeeecCccccccCcEEEEcC
Confidence 555555555531 2333344444444322 233444555555555555555
|
| >3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.8e-31 Score=256.55 Aligned_cols=356 Identities=20% Similarity=0.199 Sum_probs=250.6
Q ss_pred cccccccccEEecCCccccccccccccCCCCCcEEEccCccccCCcccccccCCCCCcEEECCCCccCCCcchhccCCCC
Q 036411 3 SFGSLKQLKILNLGFNFFIDSILPYLNTLTSLTTLNLRYNKIEGSRTKQGICNLKNLLELDLSSNNFEGHLPQCLNNLTH 82 (487)
Q Consensus 3 ~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~ 82 (487)
+++++++|++|++++|.+.+. + .+..+++|++|++++|.+++. + +..+++|++|++++|.+... + ++++++
T Consensus 37 ~~~~l~~L~~L~Ls~n~l~~~-~-~l~~l~~L~~L~Ls~n~l~~~--~--~~~l~~L~~L~Ls~N~l~~~-~--~~~l~~ 107 (457)
T 3bz5_A 37 SEEQLATLTSLDCHNSSITDM-T-GIEKLTGLTKLICTSNNITTL--D--LSQNTNLTYLACDSNKLTNL-D--VTPLTK 107 (457)
T ss_dssp EHHHHTTCCEEECCSSCCCCC-T-TGGGCTTCSEEECCSSCCSCC--C--CTTCTTCSEEECCSSCCSCC-C--CTTCTT
T ss_pred ChhHcCCCCEEEccCCCcccC-h-hhcccCCCCEEEccCCcCCeE--c--cccCCCCCEEECcCCCCcee-e--cCCCCc
Confidence 466789999999999988765 4 689999999999999999853 2 88999999999999999853 3 889999
Q ss_pred ccEEeccCccccCCccccccCCCCCcEEeccccccCcchhHHHhhccccceEEEeccCCCccccccccccCCCCCceeec
Q 036411 83 LKVLDISYNQLSGNFPSVLTNLTSLEYLDLSFIDFQGTFLINSLANHSKLEVLVLSSGNDMLQVKTENWLPTYPLKVLQL 162 (487)
Q Consensus 83 L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l 162 (487)
|++|++++|.++.. + +..+++|++|++++|.+.+. .++.+++|++++++.+..+..+ .+..+++|+.|++
T Consensus 108 L~~L~L~~N~l~~l-~--~~~l~~L~~L~l~~N~l~~l----~l~~l~~L~~L~l~~n~~~~~~---~~~~l~~L~~L~l 177 (457)
T 3bz5_A 108 LTYLNCDTNKLTKL-D--VSQNPLLTYLNCARNTLTEI----DVSHNTQLTELDCHLNKKITKL---DVTPQTQLTTLDC 177 (457)
T ss_dssp CCEEECCSSCCSCC-C--CTTCTTCCEEECTTSCCSCC----CCTTCTTCCEEECTTCSCCCCC---CCTTCTTCCEEEC
T ss_pred CCEEECCCCcCCee-c--CCCCCcCCEEECCCCcccee----ccccCCcCCEEECCCCCccccc---ccccCCcCCEEEC
Confidence 99999999999864 3 88999999999999998863 3778889999999877655544 3556678888888
Q ss_pred ccccccccccccccCCcccEEeCCCCcccCCcchHhhhcCCCCcEEEcccCCCCCCCCCCCCcCCCCCcEEEccCCcccc
Q 036411 163 SHCHLNVNSSFLLHQHHLKFLDLSHNQLVGNFPTWLLQNNTGLEVLILWNNSFSGILPRLPNAKYDKLRHLDISTNNFSG 242 (487)
Q Consensus 163 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~ 242 (487)
++|.++.++ +..+++|+.|++++|.+.+. + +..+++|+.|++++|.+... +...+++|+.|++++|.+.+
T Consensus 178 s~n~l~~l~--l~~l~~L~~L~l~~N~l~~~-~---l~~l~~L~~L~Ls~N~l~~i----p~~~l~~L~~L~l~~N~l~~ 247 (457)
T 3bz5_A 178 SFNKITELD--VSQNKLLNRLNCDTNNITKL-D---LNQNIQLTFLDCSSNKLTEI----DVTPLTQLTYFDCSVNPLTE 247 (457)
T ss_dssp CSSCCCCCC--CTTCTTCCEEECCSSCCSCC-C---CTTCTTCSEEECCSSCCSCC----CCTTCTTCSEEECCSSCCSC
T ss_pred CCCccceec--cccCCCCCEEECcCCcCCee-c---cccCCCCCEEECcCCccccc----CccccCCCCEEEeeCCcCCC
Confidence 888876655 66778888888888877643 2 44677888888888777653 24567778888888777763
Q ss_pred cCCcccccccCceEEEEccCCCCCCCcchhhhccccCcEEecccccCCCCCchhhhcCCCCCcEEECCCCccCCCCCcCC
Q 036411 243 KLPENLGIVFQKLIYLDVSKNSFEGNIPYSISEMKELITLDLSRNNFSGELPRSIFSSCLSLETLDLSNNNFYGQLFPNF 322 (487)
Q Consensus 243 ~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~ 322 (487)
. +. ..+++|+.|+++++ +|+.+++++|...+.+| ++.+++|+.|++++|...+..+.
T Consensus 248 ~-~~---~~l~~L~~L~l~~n--------------~L~~L~l~~n~~~~~~~---~~~l~~L~~L~Ls~n~~l~~l~~-- 304 (457)
T 3bz5_A 248 L-DV---STLSKLTTLHCIQT--------------DLLEIDLTHNTQLIYFQ---AEGCRKIKELDVTHNTQLYLLDC-- 304 (457)
T ss_dssp C-CC---TTCTTCCEEECTTC--------------CCSCCCCTTCTTCCEEE---CTTCTTCCCCCCTTCTTCCEEEC--
T ss_pred c-CH---HHCCCCCEEeccCC--------------CCCEEECCCCccCCccc---ccccccCCEEECCCCcccceecc--
Confidence 2 21 22466777776654 34556677776655555 35577888888888775443332
Q ss_pred cCCCCccEEEcCCCcccccccccccCCCcccEEEccCCccCCCchhhhcccccccEEecCCccccCcchhhhccCcCCcE
Q 036411 323 MNLTHLSSLRLNNNHFSGKMADGLLSSTLLDVLDVSNNKLSGDIPHWIGNFSVLWLLLMSENYLQGSIPVQLGNLESLEF 402 (487)
Q Consensus 323 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~ 402 (487)
..++|+.|++++ +++|++|++++|++++. .++.+++|+.|++++|++++ ++.|..
T Consensus 305 -~~~~L~~L~l~~-------------~~~L~~L~L~~N~l~~l---~l~~l~~L~~L~l~~N~l~~--------l~~L~~ 359 (457)
T 3bz5_A 305 -QAAGITELDLSQ-------------NPKLVYLYLNNTELTEL---DVSHNTKLKSLSCVNAHIQD--------FSSVGK 359 (457)
T ss_dssp -TTCCCSCCCCTT-------------CTTCCEEECTTCCCSCC---CCTTCTTCSEEECCSSCCCB--------CTTGGG
T ss_pred -CCCcceEechhh-------------cccCCEEECCCCccccc---ccccCCcCcEEECCCCCCCC--------cccccc
Confidence 233444443333 35667777777776653 26667777777777776653 234444
Q ss_pred EeccCCccccccccccCCCcceEEEeeCcccCCcchH
Q 036411 403 IDISENGLSVSMVSLSNLSSVKHIYLHNNAINGLIPI 439 (487)
Q Consensus 403 l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~ 439 (487)
+++.+|.+... ..+..|+.+++++|++++.+|.
T Consensus 360 L~l~~n~l~g~----~~~~~l~~l~l~~N~l~g~ip~ 392 (457)
T 3bz5_A 360 IPALNNNFEAE----GQTITMPKETLTNNSLTIAVSP 392 (457)
T ss_dssp SSGGGTSEEEE----EEEEECCCBCCBTTBEEEECCT
T ss_pred ccccCCcEEec----ceeeecCccccccCcEEEEcCh
Confidence 55555555422 2334455566666666654443
|
| >4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} | Back alignment and structure |
|---|
Probab=99.98 E-value=7.6e-30 Score=238.19 Aligned_cols=148 Identities=23% Similarity=0.348 Sum_probs=71.0
Q ss_pred cCceEEEEccCCCCCCCcchhhhccccCcEEecccccCCCCCchhhhcCCCCCcEEECCCCccCCCCCcCCcCCCCccEE
Q 036411 252 FQKLIYLDVSKNSFEGNIPYSISEMKELITLDLSRNNFSGELPRSIFSSCLSLETLDLSNNNFYGQLFPNFMNLTHLSSL 331 (487)
Q Consensus 252 ~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L 331 (487)
+++|+.+++++|.+.+..+ +..+++|+.|++++|.+. .++. +..+++|++|++++|.+.+. +.+..+++|+.|
T Consensus 198 l~~L~~L~l~~n~l~~~~~--~~~~~~L~~L~l~~n~l~-~~~~--~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L 270 (347)
T 4fmz_A 198 LTSLHYFTAYVNQITDITP--VANMTRLNSLKIGNNKIT-DLSP--LANLSQLTWLEIGTNQISDI--NAVKDLTKLKML 270 (347)
T ss_dssp CTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCC-CCGG--GTTCTTCCEEECCSSCCCCC--GGGTTCTTCCEE
T ss_pred CCccceeecccCCCCCCch--hhcCCcCCEEEccCCccC-CCcc--hhcCCCCCEEECCCCccCCC--hhHhcCCCcCEE
Confidence 3455555555555543222 445555555555555554 3333 34555555555555554432 334445555555
Q ss_pred EcCCCcccccccccccCCCcccEEEccCCccCCCchhhhcccccccEEecCCccccCcchhhhccCcCCcEEeccCCcc
Q 036411 332 RLNNNHFSGKMADGLLSSTLLDVLDVSNNKLSGDIPHWIGNFSVLWLLLMSENYLQGSIPVQLGNLESLEFIDISENGL 410 (487)
Q Consensus 332 ~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~ 410 (487)
++++|.+.+. ..+..+++|+.|++++|++++..+..+..+++|++|++++|.+++..+ +..+++|+.|++++|++
T Consensus 271 ~l~~n~l~~~--~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~N~i 345 (347)
T 4fmz_A 271 NVGSNQISDI--SVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRP--LASLSKMDSADFANQVI 345 (347)
T ss_dssp ECCSSCCCCC--GGGGGCTTCSEEECCSSCCCGGGHHHHHTCTTCSEEECCSSSCCCCGG--GGGCTTCSEESSSCC--
T ss_pred EccCCccCCC--hhhcCCCCCCEEECcCCcCCCcChhHhhccccCCEEEccCCccccccC--hhhhhccceeehhhhcc
Confidence 5555544422 233444555555555555544444444555555555555555443222 44444555555554443
|
| >2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.98 E-value=4.1e-31 Score=257.70 Aligned_cols=299 Identities=17% Similarity=0.204 Sum_probs=137.1
Q ss_pred cceEEEeccCCCccccccccccCCCCCceeeccccccccc-ccccccCCcccEEeCCCCcccCCcchHhhhcCCCCcEEE
Q 036411 131 KLEVLVLSSGNDMLQVKTENWLPTYPLKVLQLSHCHLNVN-SSFLLHQHHLKFLDLSHNQLVGNFPTWLLQNNTGLEVLI 209 (487)
Q Consensus 131 ~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~-~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~ 209 (487)
+++.|+++++ .+..+....+..+++|++|++++|.+... +..+..+++|+.|++++|.+. .++...+..+++|++|+
T Consensus 33 ~l~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~ 110 (477)
T 2id5_A 33 ETRLLDLGKN-RIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLK-LIPLGVFTGLSNLTKLD 110 (477)
T ss_dssp TCSEEECCSS-CCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCC-SCCTTSSTTCTTCCEEE
T ss_pred CCcEEECCCC-ccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCcCC-ccCcccccCCCCCCEEE
Confidence 4445555432 23333334444445555555555544222 334444555555555555444 33333334445555555
Q ss_pred cccCCCCCCCCCCCCcCCCCCcEEEccCCcccccCCcccccccCceEEEEccCCCCCCCcchhhhccccCcEEecccccC
Q 036411 210 LWNNSFSGILPRLPNAKYDKLRHLDISTNNFSGKLPENLGIVFQKLIYLDVSKNSFEGNIPYSISEMKELITLDLSRNNF 289 (487)
Q Consensus 210 l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 289 (487)
+++|.+....+. .+..+++|+.|++++|.+....+..+. .+++|++|++++|.+++..+..+..+++|+.|++++|.+
T Consensus 111 Ls~n~i~~~~~~-~~~~l~~L~~L~l~~n~l~~~~~~~~~-~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i 188 (477)
T 2id5_A 111 ISENKIVILLDY-MFQDLYNLKSLEVGDNDLVYISHRAFS-GLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNI 188 (477)
T ss_dssp CTTSCCCEECTT-TTTTCTTCCEEEECCTTCCEECTTSST-TCTTCCEEEEESCCCSSCCHHHHTTCTTCCEEEEESCCC
T ss_pred CCCCccccCChh-HccccccCCEEECCCCccceeChhhcc-CCCCCCEEECCCCcCcccChhHhcccCCCcEEeCCCCcC
Confidence 555544433222 224444555555555544422222222 234555555555554443333444455555555555554
Q ss_pred CCCCchhhhcCCCCCcEEECCCCccCCCCCcCCcCCCCccEEEcCCCcccccccccccCCCcccEEEccCCccCCCchhh
Q 036411 290 SGELPRSIFSSCLSLETLDLSNNNFYGQLFPNFMNLTHLSSLRLNNNHFSGKMADGLLSSTLLDVLDVSNNKLSGDIPHW 369 (487)
Q Consensus 290 ~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~ 369 (487)
. .++...|..+++|+.|++++|...+..+.......+|+.|++++|.+.......+..+++|+.|++++|++++..+..
T Consensus 189 ~-~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~ 267 (477)
T 2id5_A 189 N-AIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTIEGSM 267 (477)
T ss_dssp C-EECTTCSCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESSCCCSCCHHHHTTCTTCCEEECCSSCCCEECTTS
T ss_pred c-EeChhhcccCcccceeeCCCCccccccCcccccCccccEEECcCCcccccCHHHhcCccccCeeECCCCcCCccChhh
Confidence 4 333334444555555555554443333333333344555555555544333334444455555555555544444444
Q ss_pred hcccccccEEecCCccccCcchhhhccCcCCcEEeccCCccccccc-cccCCCcceEEEeeCcccC
Q 036411 370 IGNFSVLWLLLMSENYLQGSIPVQLGNLESLEFIDISENGLSVSMV-SLSNLSSVKHIYLHNNAIN 434 (487)
Q Consensus 370 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~-~~~~~~~L~~L~l~~~~~~ 434 (487)
+..+++|++|++++|.+.+..+..|..+++|+.|++++|.++.... .+..+++|+.|++.+|.+.
T Consensus 268 ~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~ 333 (477)
T 2id5_A 268 LHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLETLILDSNPLA 333 (477)
T ss_dssp CTTCTTCCEEECCSSCCSEECTTTBTTCTTCCEEECCSSCCSCCCGGGBSCGGGCCEEECCSSCEE
T ss_pred ccccccCCEEECCCCccceECHHHhcCcccCCEEECCCCcCceeCHhHcCCCcccCEEEccCCCcc
Confidence 4455555555555555544444444555555555555555433222 2234455555555555444
|
| >3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} | Back alignment and structure |
|---|
Probab=99.98 E-value=2.5e-30 Score=245.25 Aligned_cols=310 Identities=19% Similarity=0.181 Sum_probs=254.8
Q ss_pred CCCCCceeecccccccccccc-cccCCcccEEeCCCCcccCCcchHhhhcCCCCcEEEcccCCCCCCCCCCCCcCCCCCc
Q 036411 153 PTYPLKVLQLSHCHLNVNSSF-LLHQHHLKFLDLSHNQLVGNFPTWLLQNNTGLEVLILWNNSFSGILPRLPNAKYDKLR 231 (487)
Q Consensus 153 ~~~~L~~L~l~~~~~~~~~~~-~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~ 231 (487)
..++++.+++.++.+..++.. +..+++|+.|+++++.+. .++...+..+++|++|++++|.+....+. .+..+++|+
T Consensus 43 ~l~~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n~i~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~-~~~~l~~L~ 120 (390)
T 3o6n_A 43 TLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIE-EIDTYAFAYAHTIQKLYMGFNAIRYLPPH-VFQNVPLLT 120 (390)
T ss_dssp GGCCCSEEEEESCEESEECTHHHHHCCCCSEEECTTSCCC-EECTTTTTTCTTCCEEECCSSCCCCCCTT-TTTTCTTCC
T ss_pred ccCCceEEEecCCchhhCChhHhcccccCcEEECCCCccc-ccChhhccCCCCcCEEECCCCCCCcCCHH-HhcCCCCCC
Confidence 346788888888888666654 577899999999999886 45555566889999999999988766544 457889999
Q ss_pred EEEccCCcccccCCcccccccCceEEEEccCCCCCCCcchhhhccccCcEEecccccCCCCCchhhhcCCCCCcEEECCC
Q 036411 232 HLDISTNNFSGKLPENLGIVFQKLIYLDVSKNSFEGNIPYSISEMKELITLDLSRNNFSGELPRSIFSSCLSLETLDLSN 311 (487)
Q Consensus 232 ~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~ 311 (487)
.|++++|.+. .++..++..+++|++|++++|.+.+..+..+..+++|+.|++++|.+. .++ +..+++|+.+++++
T Consensus 121 ~L~L~~n~l~-~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~~~---~~~l~~L~~L~l~~ 195 (390)
T 3o6n_A 121 VLVLERNDLS-SLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLT-HVD---LSLIPSLFHANVSY 195 (390)
T ss_dssp EEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCS-BCC---GGGCTTCSEEECCS
T ss_pred EEECCCCccC-cCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCC-ccc---cccccccceeeccc
Confidence 9999999888 666665556789999999999998777777889999999999999987 554 35578999999999
Q ss_pred CccCCCCCcCCcCCCCccEEEcCCCcccccccccccCCCcccEEEccCCccCCCchhhhcccccccEEecCCccccCcch
Q 036411 312 NNFYGQLFPNFMNLTHLSSLRLNNNHFSGKMADGLLSSTLLDVLDVSNNKLSGDIPHWIGNFSVLWLLLMSENYLQGSIP 391 (487)
Q Consensus 312 ~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~ 391 (487)
|.+... ...++|++|++++|.+... +.. ..++|+.|++++|.+++. ..+..+++|++|++++|.+.+..+
T Consensus 196 n~l~~~-----~~~~~L~~L~l~~n~l~~~-~~~--~~~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~Ls~n~l~~~~~ 265 (390)
T 3o6n_A 196 NLLSTL-----AIPIAVEELDASHNSINVV-RGP--VNVELTILKLQHNNLTDT--AWLLNYPGLVEVDLSYNELEKIMY 265 (390)
T ss_dssp SCCSEE-----ECCSSCSEEECCSSCCCEE-ECC--CCSSCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCEEES
T ss_pred cccccc-----CCCCcceEEECCCCeeeec-ccc--ccccccEEECCCCCCccc--HHHcCCCCccEEECCCCcCCCcCh
Confidence 977532 3446899999999998744 322 357899999999998754 578899999999999999987778
Q ss_pred hhhccCcCCcEEeccCCccccccccccCCCcceEEEeeCcccCCcchHhhhccCcceEEeCCCCcccccCcccccccCce
Q 036411 392 VQLGNLESLEFIDISENGLSVSMVSLSNLSSVKHIYLHNNAINGLIPIALLRSSTLLTLDLRDNKFFGRIPHQINELSNL 471 (487)
Q Consensus 392 ~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L 471 (487)
..+..+++|+.|++++|+++.....+..+++|++|++++|.+... +..+..+++|+.|++++|+++.. + +..+++|
T Consensus 266 ~~~~~l~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~L~~n~l~~~-~~~~~~l~~L~~L~L~~N~i~~~-~--~~~~~~L 341 (390)
T 3o6n_A 266 HPFVKMQRLERLYISNNRLVALNLYGQPIPTLKVLDLSHNHLLHV-ERNQPQFDRLENLYLDHNSIVTL-K--LSTHHTL 341 (390)
T ss_dssp GGGTTCSSCCEEECCSSCCCEEECSSSCCTTCCEEECCSSCCCCC-GGGHHHHTTCSEEECCSSCCCCC-C--CCTTCCC
T ss_pred hHccccccCCEEECCCCcCcccCcccCCCCCCCEEECCCCcceec-CccccccCcCCEEECCCCcccee-C--chhhccC
Confidence 899999999999999999987777777899999999999999865 55677889999999999998644 2 7889999
Q ss_pred eEEeccCCccCC
Q 036411 472 HFLLLRGNSLQG 483 (487)
Q Consensus 472 ~~L~l~~~~~~~ 483 (487)
+.|++++|++.+
T Consensus 342 ~~L~l~~N~~~~ 353 (390)
T 3o6n_A 342 KNLTLSHNDWDC 353 (390)
T ss_dssp SEEECCSSCEEH
T ss_pred CEEEcCCCCccc
Confidence 999999998754
|
| >3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} | Back alignment and structure |
|---|
Probab=99.97 E-value=6.2e-30 Score=242.56 Aligned_cols=308 Identities=19% Similarity=0.218 Sum_probs=146.3
Q ss_pred CCCcEEECCCCccCCCcchhccCCCCccEEeccCccccCCccccccCCCCCcEEeccccccCcchhHHHhhccccceEEE
Q 036411 57 KNLLELDLSSNNFEGHLPQCLNNLTHLKVLDISYNQLSGNFPSVLTNLTSLEYLDLSFIDFQGTFLINSLANHSKLEVLV 136 (487)
Q Consensus 57 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~l~ 136 (487)
++++.++++++.+....+..+..+++|++|++++|.++...+..|..+++|++|++++|.+.+
T Consensus 45 ~~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~----------------- 107 (390)
T 3o6n_A 45 NNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRY----------------- 107 (390)
T ss_dssp CCCSEEEEESCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCC-----------------
T ss_pred CCceEEEecCCchhhCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCc-----------------
Confidence 445555555554443222334445555555555554443333344445555555554444321
Q ss_pred eccCCCccccccccccCCCCCceeeccccccccccc-ccccCCcccEEeCCCCcccCCcchHhhhcCCCCcEEEcccCCC
Q 036411 137 LSSGNDMLQVKTENWLPTYPLKVLQLSHCHLNVNSS-FLLHQHHLKFLDLSHNQLVGNFPTWLLQNNTGLEVLILWNNSF 215 (487)
Q Consensus 137 l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~-~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 215 (487)
++...+..+++|++|++++|.+..++. .+..+++|++|++++|.+.+ .+...+..+++|+.|++++|.+
T Consensus 108 ---------~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~-~~~~~~~~l~~L~~L~l~~n~l 177 (390)
T 3o6n_A 108 ---------LPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLER-IEDDTFQATTSLQNLQLSSNRL 177 (390)
T ss_dssp ---------CCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCB-CCTTTTSSCTTCCEEECCSSCC
T ss_pred ---------CCHHHhcCCCCCCEEECCCCccCcCCHHHhcCCCCCcEEECCCCccCc-cChhhccCCCCCCEEECCCCcC
Confidence 111112222233333333333322222 23456666666666666552 3222233445555555555444
Q ss_pred CCCCCCCCCcCCCCCcEEEccCCcccccCCcccccccCceEEEEccCCCCCCCcchhhhccccCcEEecccccCCCCCch
Q 036411 216 SGILPRLPNAKYDKLRHLDISTNNFSGKLPENLGIVFQKLIYLDVSKNSFEGNIPYSISEMKELITLDLSRNNFSGELPR 295 (487)
Q Consensus 216 ~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~ 295 (487)
... ....+ ++|++|++++|.+.+ +...++|+.|++++|.+. .++.
T Consensus 178 ~~~----~~~~l-------------------------~~L~~L~l~~n~l~~-----~~~~~~L~~L~l~~n~l~-~~~~ 222 (390)
T 3o6n_A 178 THV----DLSLI-------------------------PSLFHANVSYNLLST-----LAIPIAVEELDASHNSIN-VVRG 222 (390)
T ss_dssp SBC----CGGGC-------------------------TTCSEEECCSSCCSE-----EECCSSCSEEECCSSCCC-EEEC
T ss_pred Ccc----ccccc-------------------------cccceeecccccccc-----cCCCCcceEEECCCCeee-eccc
Confidence 322 12333 444455554444331 122334555555555554 3333
Q ss_pred hhhcCCCCCcEEECCCCccCCCCCcCCcCCCCccEEEcCCCcccccccccccCCCcccEEEccCCccCCCchhhhccccc
Q 036411 296 SIFSSCLSLETLDLSNNNFYGQLFPNFMNLTHLSSLRLNNNHFSGKMADGLLSSTLLDVLDVSNNKLSGDIPHWIGNFSV 375 (487)
Q Consensus 296 ~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~ 375 (487)
.. .++|+.|++++|.+.+. ..+..+++|++|++++|.+.+..+..+..+++|++|++++|+++ .++..+..+++
T Consensus 223 ~~---~~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~l~~ 296 (390)
T 3o6n_A 223 PV---NVELTILKLQHNNLTDT--AWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLV-ALNLYGQPIPT 296 (390)
T ss_dssp CC---CSSCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECCSSCCC-EEECSSSCCTT
T ss_pred cc---cccccEEECCCCCCccc--HHHcCCCCccEEECCCCcCCCcChhHccccccCCEEECCCCcCc-ccCcccCCCCC
Confidence 21 34555555555555432 34445555555555555555444555555555555555555554 23333445555
Q ss_pred ccEEecCCccccCcchhhhccCcCCcEEeccCCccccccccccCCCcceEEEeeCcccCC
Q 036411 376 LWLLLMSENYLQGSIPVQLGNLESLEFIDISENGLSVSMVSLSNLSSVKHIYLHNNAING 435 (487)
Q Consensus 376 L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~ 435 (487)
|++|++++|.+. ..+..+..+++|+.|++++|+++.. .+..+++|++|++++|++..
T Consensus 297 L~~L~L~~n~l~-~~~~~~~~l~~L~~L~L~~N~i~~~--~~~~~~~L~~L~l~~N~~~~ 353 (390)
T 3o6n_A 297 LKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIVTL--KLSTHHTLKNLTLSHNDWDC 353 (390)
T ss_dssp CCEEECCSSCCC-CCGGGHHHHTTCSEEECCSSCCCCC--CCCTTCCCSEEECCSSCEEH
T ss_pred CCEEECCCCcce-ecCccccccCcCCEEECCCCcccee--CchhhccCCEEEcCCCCccc
Confidence 666666666555 3444455556666666666665432 14455666666666666553
|
| >3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} | Back alignment and structure |
|---|
Probab=99.97 E-value=2.1e-29 Score=251.68 Aligned_cols=310 Identities=19% Similarity=0.191 Sum_probs=255.2
Q ss_pred CCCCCceeeccccccccccc-ccccCCcccEEeCCCCcccCCcchHhhhcCCCCcEEEcccCCCCCCCCCCCCcCCCCCc
Q 036411 153 PTYPLKVLQLSHCHLNVNSS-FLLHQHHLKFLDLSHNQLVGNFPTWLLQNNTGLEVLILWNNSFSGILPRLPNAKYDKLR 231 (487)
Q Consensus 153 ~~~~L~~L~l~~~~~~~~~~-~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~ 231 (487)
...+++.+++.++.+..++. .+..+++|+.|++++|.+. .++...+..+++|++|++++|.+....+. .+..+++|+
T Consensus 49 ~l~~l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~-~~~~l~~L~ 126 (597)
T 3oja_B 49 TLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIE-EIDTYAFAYAHTIQKLYMGFNAIRYLPPH-VFQNVPLLT 126 (597)
T ss_dssp GGCCCSEEEESSCEESEECTHHHHHCCCCSEEECTTSCCC-EECTTTTTTCTTCCEEECCSSCCCCCCTT-TTTTCTTCC
T ss_pred cCCCceEEEeeCCCCCCcCHHHHccCCCCcEEECCCCCCC-CCChHHhcCCCCCCEEECCCCcCCCCCHH-HHcCCCCCC
Confidence 34578888888888866655 4667889999999999887 45544566889999999999988765554 457889999
Q ss_pred EEEccCCcccccCCcccccccCceEEEEccCCCCCCCcchhhhccccCcEEecccccCCCCCchhhhcCCCCCcEEECCC
Q 036411 232 HLDISTNNFSGKLPENLGIVFQKLIYLDVSKNSFEGNIPYSISEMKELITLDLSRNNFSGELPRSIFSSCLSLETLDLSN 311 (487)
Q Consensus 232 ~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~ 311 (487)
.|++++|.+. .++..++..+++|++|++++|.+.+..+..+..+++|+.|++++|.+. .++ +..+++|+.+++++
T Consensus 127 ~L~L~~n~l~-~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~-~~~---~~~l~~L~~L~l~~ 201 (597)
T 3oja_B 127 VLVLERNDLS-SLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLT-HVD---LSLIPSLFHANVSY 201 (597)
T ss_dssp EEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCS-BCC---GGGCTTCSEEECCS
T ss_pred EEEeeCCCCC-CCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCC-CcC---hhhhhhhhhhhccc
Confidence 9999999888 666665556789999999999998777778889999999999999987 555 35578999999999
Q ss_pred CccCCCCCcCCcCCCCccEEEcCCCcccccccccccCCCcccEEEccCCccCCCchhhhcccccccEEecCCccccCcch
Q 036411 312 NNFYGQLFPNFMNLTHLSSLRLNNNHFSGKMADGLLSSTLLDVLDVSNNKLSGDIPHWIGNFSVLWLLLMSENYLQGSIP 391 (487)
Q Consensus 312 ~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~ 391 (487)
|.+.+ +...++|+.|++++|.+....... .++|+.|++++|.+++ +..+..+++|++|++++|.+.+..|
T Consensus 202 n~l~~-----l~~~~~L~~L~ls~n~l~~~~~~~---~~~L~~L~L~~n~l~~--~~~l~~l~~L~~L~Ls~N~l~~~~~ 271 (597)
T 3oja_B 202 NLLST-----LAIPIAVEELDASHNSINVVRGPV---NVELTILKLQHNNLTD--TAWLLNYPGLVEVDLSYNELEKIMY 271 (597)
T ss_dssp SCCSE-----EECCTTCSEEECCSSCCCEEECSC---CSCCCEEECCSSCCCC--CGGGGGCTTCSEEECCSSCCCEEES
T ss_pred Ccccc-----ccCCchhheeeccCCccccccccc---CCCCCEEECCCCCCCC--ChhhccCCCCCEEECCCCccCCCCH
Confidence 97754 234568999999999987443322 3689999999999975 4678899999999999999998888
Q ss_pred hhhccCcCCcEEeccCCccccccccccCCCcceEEEeeCcccCCcchHhhhccCcceEEeCCCCcccccCcccccccCce
Q 036411 392 VQLGNLESLEFIDISENGLSVSMVSLSNLSSVKHIYLHNNAINGLIPIALLRSSTLLTLDLRDNKFFGRIPHQINELSNL 471 (487)
Q Consensus 392 ~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L 471 (487)
..+..+++|+.|++++|.+...+..+..+++|+.|++++|.++. +|..+..+++|+.|++++|.++.. .+..+++|
T Consensus 272 ~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~L~~L~Ls~N~l~~-i~~~~~~l~~L~~L~L~~N~l~~~---~~~~~~~L 347 (597)
T 3oja_B 272 HPFVKMQRLERLYISNNRLVALNLYGQPIPTLKVLDLSHNHLLH-VERNQPQFDRLENLYLDHNSIVTL---KLSTHHTL 347 (597)
T ss_dssp GGGTTCSSCCEEECTTSCCCEEECSSSCCTTCCEEECCSSCCCC-CGGGHHHHTTCSEEECCSSCCCCC---CCCTTCCC
T ss_pred HHhcCccCCCEEECCCCCCCCCCcccccCCCCcEEECCCCCCCc-cCcccccCCCCCEEECCCCCCCCc---ChhhcCCC
Confidence 89999999999999999998777777789999999999999985 466678899999999999998644 27788999
Q ss_pred eEEeccCCccCC
Q 036411 472 HFLLLRGNSLQG 483 (487)
Q Consensus 472 ~~L~l~~~~~~~ 483 (487)
+.|++++||+.+
T Consensus 348 ~~L~l~~N~~~~ 359 (597)
T 3oja_B 348 KNLTLSHNDWDC 359 (597)
T ss_dssp SEEECCSSCEEH
T ss_pred CEEEeeCCCCCC
Confidence 999999999764
|
| >1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I | Back alignment and structure |
|---|
Probab=99.97 E-value=2.7e-32 Score=265.23 Aligned_cols=381 Identities=20% Similarity=0.144 Sum_probs=228.2
Q ss_pred CCCcEEECCCCccCCCcch-hccCCCCccEEeccCccccC----CccccccCCCCCcEEeccccccCcchhHHHhhcccc
Q 036411 57 KNLLELDLSSNNFEGHLPQ-CLNNLTHLKVLDISYNQLSG----NFPSVLTNLTSLEYLDLSFIDFQGTFLINSLANHSK 131 (487)
Q Consensus 57 ~~L~~L~l~~~~~~~~~~~-~~~~l~~L~~L~l~~~~~~~----~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~ 131 (487)
++|++|+++++.+.+.... .+..+++|++|++++|.++. .++..+..+++|++|++++|.+...........++.
T Consensus 3 ~~l~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~ 82 (461)
T 1z7x_W 3 LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQT 82 (461)
T ss_dssp EEEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCS
T ss_pred ccceehhhhhcccCchhHHHHHhhcCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHHHhh
Confidence 5788888888887644333 36778888888888888763 345667778888888888887764333333333330
Q ss_pred ceEEEeccCCCccccccccccCCCCCceeeccccccc-----ccccccccCCcccEEeCCCCcccCCcchHhhh----cC
Q 036411 132 LEVLVLSSGNDMLQVKTENWLPTYPLKVLQLSHCHLN-----VNSSFLLHQHHLKFLDLSHNQLVGNFPTWLLQ----NN 202 (487)
Q Consensus 132 L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~-----~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~----~~ 202 (487)
..++|++|++++|.++ .++..+..+++|+.|++++|.+.+.....+.. ..
T Consensus 83 ---------------------~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~ 141 (461)
T 1z7x_W 83 ---------------------PSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQ 141 (461)
T ss_dssp ---------------------TTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTT
T ss_pred ---------------------CCCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCC
Confidence 0113555555555543 23445566677777777777665333332222 23
Q ss_pred CCCcEEEcccCCCCCCCCC---CCCcCCCCCcEEEccCCcccccCCccccc----ccCceEEEEccCCCCCCC----cch
Q 036411 203 TGLEVLILWNNSFSGILPR---LPNAKYDKLRHLDISTNNFSGKLPENLGI----VFQKLIYLDVSKNSFEGN----IPY 271 (487)
Q Consensus 203 ~~L~~L~l~~~~~~~~~~~---~~~~~~~~L~~L~l~~~~~~~~~~~~~~~----~~~~L~~L~l~~~~~~~~----~~~ 271 (487)
++|++|++++|.+...... ..+..+++|+.|++++|.+.+.....+.. ..++|++|++++|.+++. ++.
T Consensus 142 ~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~ 221 (461)
T 1z7x_W 142 CRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCG 221 (461)
T ss_dssp CCCCEEECTTSCCBGGGHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHH
T ss_pred CcceEEECCCCCCCHHHHHHHHHHHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHH
Confidence 4577777766655432110 01234567777777777665433333322 234788888888877653 345
Q ss_pred hhhccccCcEEecccccCCCCC----chhhhcCCCCCcEEECCCCccCCC----CCcCCcCCCCccEEEcCCCccccccc
Q 036411 272 SISEMKELITLDLSRNNFSGEL----PRSIFSSCLSLETLDLSNNNFYGQ----LFPNFMNLTHLSSLRLNNNHFSGKMA 343 (487)
Q Consensus 272 ~~~~~~~L~~L~l~~~~~~~~~----~~~~~~~~~~L~~L~l~~~~~~~~----~~~~~~~~~~L~~L~l~~~~~~~~~~ 343 (487)
.+..+++|+.|++++|.+.+.. ....+..+++|++|++++|.+.+. .+..+..+++|++|++++|.+.....
T Consensus 222 ~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~ 301 (461)
T 1z7x_W 222 IVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGA 301 (461)
T ss_dssp HHHHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHH
T ss_pred HHHhCCCccEEeccCCcCChHHHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCchHHH
Confidence 5666788888888887765221 123334567888888888876543 23445557778888888777754333
Q ss_pred cccc-----CCCcccEEEccCCccCCC----chhhhcccccccEEecCCccccCcchhhhcc-----CcCCcEEeccCCc
Q 036411 344 DGLL-----SSTLLDVLDVSNNKLSGD----IPHWIGNFSVLWLLLMSENYLQGSIPVQLGN-----LESLEFIDISENG 409 (487)
Q Consensus 344 ~~~~-----~~~~L~~L~l~~~~~~~~----~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~-----~~~L~~l~l~~~~ 409 (487)
..+. ..++|++|++++|.+++. ++..+..+++|++|++++|.+.+..+..+.. .++|+.|++++|.
T Consensus 302 ~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~ 381 (461)
T 1z7x_W 302 RLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCD 381 (461)
T ss_dssp HHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSC
T ss_pred HHHHHHhccCCccceeeEcCCCCCchHHHHHHHHHHhhCCCccEEEccCCccccccHHHHHHHHcCCCCceEEEECCCCC
Confidence 3222 225777777777777644 3455566677777777777766444433332 5677777777777
Q ss_pred cc-----cccccccCCCcceEEEeeCcccCCcchHhhh-----ccCcceEEeCCCCccc
Q 036411 410 LS-----VSMVSLSNLSSVKHIYLHNNAINGLIPIALL-----RSSTLLTLDLRDNKFF 458 (487)
Q Consensus 410 ~~-----~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~-----~~~~L~~L~l~~~~~~ 458 (487)
++ ..+..+..+++|++|++++|+++......+. ...+|+.|.+.++...
T Consensus 382 i~~~~~~~l~~~l~~~~~L~~L~l~~N~i~~~~~~~l~~~l~~~~~~L~~L~~~~~~~~ 440 (461)
T 1z7x_W 382 VSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGCLLEQLVLYDIYWS 440 (461)
T ss_dssp CCHHHHHHHHHHHHHCCCCCEEECCSSSCCHHHHHHHHHHHTSTTCCCCEEECTTCCCC
T ss_pred CChhhHHHHHHHHHhCCCccEEECCCCCCCHHHHHHHHHHhccCCcchhheeecccccC
Confidence 65 3444455667777777777776643222221 1235666666666654
|
| >1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I | Back alignment and structure |
|---|
Probab=99.96 E-value=2.1e-31 Score=258.97 Aligned_cols=378 Identities=18% Similarity=0.108 Sum_probs=252.9
Q ss_pred CCCcEEeccccccCcchhHHHhhccccceEEEeccCCCccc---cccccccCCCCCceeecccccccc--cccccccCC-
Q 036411 105 TSLEYLDLSFIDFQGTFLINSLANHSKLEVLVLSSGNDMLQ---VKTENWLPTYPLKVLQLSHCHLNV--NSSFLLHQH- 178 (487)
Q Consensus 105 ~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~---~~~~~~~~~~~L~~L~l~~~~~~~--~~~~~~~~~- 178 (487)
++|++|+++++.+........+..+++|++++++++.-... .....+..+++|++|+++++.+.. .......++
T Consensus 3 ~~l~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~ 82 (461)
T 1z7x_W 3 LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQT 82 (461)
T ss_dssp EEEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCS
T ss_pred ccceehhhhhcccCchhHHHHHhhcCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHHHhh
Confidence 56889999999988766666789999999999988763221 112345566889999999888732 222223344
Q ss_pred ---cccEEeCCCCcccCCc---chHhhhcCCCCcEEEcccCCCCCCCCC----CCCcCCCCCcEEEccCCcccccCCccc
Q 036411 179 ---HLKFLDLSHNQLVGNF---PTWLLQNNTGLEVLILWNNSFSGILPR----LPNAKYDKLRHLDISTNNFSGKLPENL 248 (487)
Q Consensus 179 ---~L~~L~l~~~~~~~~~---~~~~~~~~~~L~~L~l~~~~~~~~~~~----~~~~~~~~L~~L~l~~~~~~~~~~~~~ 248 (487)
+|++|++++|.+.+.. ....+..+++|++|++++|.+...... ......++|+.|++++|.+.+.....+
T Consensus 83 ~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l 162 (461)
T 1z7x_W 83 PSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPL 162 (461)
T ss_dssp TTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHH
T ss_pred CCCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHH
Confidence 6999999999876422 133345788899999988876532111 011234578899998887775432222
Q ss_pred ---ccccCceEEEEccCCCCCCCcchhhh-----ccccCcEEecccccCCCCC---chhhhcCCCCCcEEECCCCccCCC
Q 036411 249 ---GIVFQKLIYLDVSKNSFEGNIPYSIS-----EMKELITLDLSRNNFSGEL---PRSIFSSCLSLETLDLSNNNFYGQ 317 (487)
Q Consensus 249 ---~~~~~~L~~L~l~~~~~~~~~~~~~~-----~~~~L~~L~l~~~~~~~~~---~~~~~~~~~~L~~L~l~~~~~~~~ 317 (487)
...+++|++|++++|.+.+.....+. ..++|+.|++++|.+.+.. -...+..+++|++|++++|.+.+.
T Consensus 163 ~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~ 242 (461)
T 1z7x_W 163 ASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDV 242 (461)
T ss_dssp HHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHH
T ss_pred HHHHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCChH
Confidence 22357888999988887643333332 2458889999888887321 122346678899999988876543
Q ss_pred CC----c-CCcCCCCccEEEcCCCccccc----ccccccCCCcccEEEccCCccCCCchhhhcc-----cccccEEecCC
Q 036411 318 LF----P-NFMNLTHLSSLRLNNNHFSGK----MADGLLSSTLLDVLDVSNNKLSGDIPHWIGN-----FSVLWLLLMSE 383 (487)
Q Consensus 318 ~~----~-~~~~~~~L~~L~l~~~~~~~~----~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~-----~~~L~~L~l~~ 383 (487)
.. + .+..+++|++|++++|.++.. .+..+..+++|++|++++|.+.+..+..+.. .++|++|++++
T Consensus 243 ~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~ 322 (461)
T 1z7x_W 243 GMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKS 322 (461)
T ss_dssp HHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTT
T ss_pred HHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCchHHHHHHHHHhccCCccceeeEcCC
Confidence 21 1 123578889999988888753 3455666888899999988876544444433 26888999998
Q ss_pred ccccCc----chhhhccCcCCcEEeccCCccccc-ccccc-----CCCcceEEEeeCcccCC----cchHhhhccCcceE
Q 036411 384 NYLQGS----IPVQLGNLESLEFIDISENGLSVS-MVSLS-----NLSSVKHIYLHNNAING----LIPIALLRSSTLLT 449 (487)
Q Consensus 384 ~~~~~~----~~~~~~~~~~L~~l~l~~~~~~~~-~~~~~-----~~~~L~~L~l~~~~~~~----~~~~~~~~~~~L~~ 449 (487)
|.++.. .+..+..+++|+.|++++|.+... ...+. ..++|++|++++|.+++ ..+.++..+++|+.
T Consensus 323 n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~ 402 (461)
T 1z7x_W 323 CSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRE 402 (461)
T ss_dssp SCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCCCCCE
T ss_pred CCCchHHHHHHHHHHhhCCCccEEEccCCccccccHHHHHHHHcCCCCceEEEECCCCCCChhhHHHHHHHHHhCCCccE
Confidence 887754 345566778899999988887532 22221 26788999998888875 55667777888999
Q ss_pred EeCCCCcccccCccccc-----ccCceeEEeccCCccC
Q 036411 450 LDLRDNKFFGRIPHQIN-----ELSNLHFLLLRGNSLQ 482 (487)
Q Consensus 450 L~l~~~~~~~~~~~~l~-----~l~~L~~L~l~~~~~~ 482 (487)
|++++|++++.....+. ..++|+.|++.++.+.
T Consensus 403 L~l~~N~i~~~~~~~l~~~l~~~~~~L~~L~~~~~~~~ 440 (461)
T 1z7x_W 403 LDLSNNCLGDAGILQLVESVRQPGCLLEQLVLYDIYWS 440 (461)
T ss_dssp EECCSSSCCHHHHHHHHHHHTSTTCCCCEEECTTCCCC
T ss_pred EECCCCCCCHHHHHHHHHHhccCCcchhheeecccccC
Confidence 99998888644333222 2335777777776554
|
| >3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} | Back alignment and structure |
|---|
Probab=99.96 E-value=1.4e-28 Score=245.66 Aligned_cols=308 Identities=19% Similarity=0.177 Sum_probs=173.1
Q ss_pred CCCCcEEEccCccccCCcccccccCCCCCcEEECCCCccCCCcchhccCCCCccEEeccCccccCCccccccCCCCCcEE
Q 036411 31 LTSLTTLNLRYNKIEGSRTKQGICNLKNLLELDLSSNNFEGHLPQCLNNLTHLKVLDISYNQLSGNFPSVLTNLTSLEYL 110 (487)
Q Consensus 31 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L 110 (487)
+++++.++++++.+.. .++..+.++++|++|++++|.+....+..+..+++|++|++++|.++...+..|..+++|++|
T Consensus 50 l~~l~~l~l~~~~l~~-lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 128 (597)
T 3oja_B 50 LNNQKIVTFKNSTMRK-LPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVL 128 (597)
T ss_dssp GCCCSEEEESSCEESE-ECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred CCCceEEEeeCCCCCC-cCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEE
Confidence 5678888888887763 344557788888888888888876666678888888888888888887777777888888888
Q ss_pred eccccccCcchhHHHhhccccceEEEeccCCCccccccccccCCCCCceeecccccccc-cccccccCCcccEEeCCCCc
Q 036411 111 DLSFIDFQGTFLINSLANHSKLEVLVLSSGNDMLQVKTENWLPTYPLKVLQLSHCHLNV-NSSFLLHQHHLKFLDLSHNQ 189 (487)
Q Consensus 111 ~l~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~-~~~~~~~~~~L~~L~l~~~~ 189 (487)
++++|.+.. . +...+..+++|++|++++|.+.. .+..+..+++|+.|++++|.
T Consensus 129 ~L~~n~l~~-l-------------------------~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~ 182 (597)
T 3oja_B 129 VLERNDLSS-L-------------------------PRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNR 182 (597)
T ss_dssp ECCSSCCCC-C-------------------------CTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSC
T ss_pred EeeCCCCCC-C-------------------------CHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCC
Confidence 888876652 1 12223334444555555554422 22345556666666666666
Q ss_pred ccCCcchHhhhcCCCCcEEEcccCCCCCCCCCCCCcCCCCCcEEEccCCcccccCCcccccccCceEEEEccCCCCCCCc
Q 036411 190 LVGNFPTWLLQNNTGLEVLILWNNSFSGILPRLPNAKYDKLRHLDISTNNFSGKLPENLGIVFQKLIYLDVSKNSFEGNI 269 (487)
Q Consensus 190 ~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~ 269 (487)
+.+. + ...++.|+.+++++|.+... ...++|+.|++++|.+. .++... +++|+.|++++|.+++.
T Consensus 183 l~~~-~---~~~l~~L~~L~l~~n~l~~l------~~~~~L~~L~ls~n~l~-~~~~~~---~~~L~~L~L~~n~l~~~- 247 (597)
T 3oja_B 183 LTHV-D---LSLIPSLFHANVSYNLLSTL------AIPIAVEELDASHNSIN-VVRGPV---NVELTILKLQHNNLTDT- 247 (597)
T ss_dssp CSBC-C---GGGCTTCSEEECCSSCCSEE------ECCTTCSEEECCSSCCC-EEECSC---CSCCCEEECCSSCCCCC-
T ss_pred CCCc-C---hhhhhhhhhhhcccCccccc------cCCchhheeeccCCccc-cccccc---CCCCCEEECCCCCCCCC-
Confidence 5532 2 22455666666665544321 22345566666665554 222211 24566666666655532
Q ss_pred chhhhccccCcEEecccccCCCCCchhhhcCCCCCcEEECCCCccCCCCCcCCcCCCCccEEEcCCCcccccccccccCC
Q 036411 270 PYSISEMKELITLDLSRNNFSGELPRSIFSSCLSLETLDLSNNNFYGQLFPNFMNLTHLSSLRLNNNHFSGKMADGLLSS 349 (487)
Q Consensus 270 ~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~ 349 (487)
..+..+++|+.|++++|.+. .++...|..+++|+.|++++|.+.+. +..+..+++|+.|++++|.+. ..+..+..+
T Consensus 248 -~~l~~l~~L~~L~Ls~N~l~-~~~~~~~~~l~~L~~L~Ls~N~l~~l-~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~l 323 (597)
T 3oja_B 248 -AWLLNYPGLVEVDLSYNELE-KIMYHPFVKMQRLERLYISNNRLVAL-NLYGQPIPTLKVLDLSHNHLL-HVERNQPQF 323 (597)
T ss_dssp -GGGGGCTTCSEEECCSSCCC-EEESGGGTTCSSCCEEECTTSCCCEE-ECSSSCCTTCCEEECCSSCCC-CCGGGHHHH
T ss_pred -hhhccCCCCCEEECCCCccC-CCCHHHhcCccCCCEEECCCCCCCCC-CcccccCCCCcEEECCCCCCC-ccCcccccC
Confidence 34455555555666555555 33333345555555555555555432 223334455555555555544 233333444
Q ss_pred CcccEEEccCCccCCCchhhhcccccccEEecCCcccc
Q 036411 350 TLLDVLDVSNNKLSGDIPHWIGNFSVLWLLLMSENYLQ 387 (487)
Q Consensus 350 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 387 (487)
++|+.|++++|.+++.. +..+++|+.|++++|.+.
T Consensus 324 ~~L~~L~L~~N~l~~~~---~~~~~~L~~L~l~~N~~~ 358 (597)
T 3oja_B 324 DRLENLYLDHNSIVTLK---LSTHHTLKNLTLSHNDWD 358 (597)
T ss_dssp TTCSEEECCSSCCCCCC---CCTTCCCSEEECCSSCEE
T ss_pred CCCCEEECCCCCCCCcC---hhhcCCCCEEEeeCCCCC
Confidence 55555555555544221 334445555555555443
|
| >1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 | Back alignment and structure |
|---|
Probab=99.96 E-value=6.1e-30 Score=234.24 Aligned_cols=252 Identities=28% Similarity=0.452 Sum_probs=224.8
Q ss_pred CCCcEEEccCCcccc--cCCcccccccCceEEEEccC-CCCCCCcchhhhccccCcEEecccccCCCCCchhhhcCCCCC
Q 036411 228 DKLRHLDISTNNFSG--KLPENLGIVFQKLIYLDVSK-NSFEGNIPYSISEMKELITLDLSRNNFSGELPRSIFSSCLSL 304 (487)
Q Consensus 228 ~~L~~L~l~~~~~~~--~~~~~~~~~~~~L~~L~l~~-~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L 304 (487)
.+++.|+++++.+.+ .++..+.. +++|++|++++ +.+.+..+..+..+++|++|++++|.+.+.+|.. |..+++|
T Consensus 50 ~~l~~L~L~~~~l~~~~~~~~~l~~-l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~-~~~l~~L 127 (313)
T 1ogq_A 50 YRVNNLDLSGLNLPKPYPIPSSLAN-LPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDF-LSQIKTL 127 (313)
T ss_dssp CCEEEEEEECCCCSSCEECCGGGGG-CTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGG-GGGCTTC
T ss_pred ceEEEEECCCCCccCCcccChhHhC-CCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHH-HhCCCCC
Confidence 468888888888876 56666554 68999999995 8888788888999999999999999998566654 5889999
Q ss_pred cEEECCCCccCCCCCcCCcCCCCccEEEcCCCcccccccccccCCC-cccEEEccCCccCCCchhhhcccccccEEecCC
Q 036411 305 ETLDLSNNNFYGQLFPNFMNLTHLSSLRLNNNHFSGKMADGLLSST-LLDVLDVSNNKLSGDIPHWIGNFSVLWLLLMSE 383 (487)
Q Consensus 305 ~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~-~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~ 383 (487)
++|++++|.+.+..+..+..+++|++|++++|.+.+..+..+..++ +|+.|++++|++++..|..+..++ |++|++++
T Consensus 128 ~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L~~L~Ls~ 206 (313)
T 1ogq_A 128 VTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSR 206 (313)
T ss_dssp CEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCC-CSEEECCS
T ss_pred CEEeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCc-ccEEECcC
Confidence 9999999999888888899999999999999999888888888887 999999999999888899999887 99999999
Q ss_pred ccccCcchhhhccCcCCcEEeccCCccccccccccCCCcceEEEeeCcccCCcchHhhhccCcceEEeCCCCcccccCcc
Q 036411 384 NYLQGSIPVQLGNLESLEFIDISENGLSVSMVSLSNLSSVKHIYLHNNAINGLIPIALLRSSTLLTLDLRDNKFFGRIPH 463 (487)
Q Consensus 384 ~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~ 463 (487)
|.+.+..+..+..+++|+.|++++|.+......+..+++|++|++++|.+++..|.++..+++|+.|++++|++++.+|.
T Consensus 207 N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~ 286 (313)
T 1ogq_A 207 NMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQ 286 (313)
T ss_dssp SEEEECCGGGCCTTSCCSEEECCSSEECCBGGGCCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCC
T ss_pred CcccCcCCHHHhcCCCCCEEECCCCceeeecCcccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCcccccCCC
Confidence 99988888899999999999999999987777788899999999999999988899999999999999999999988888
Q ss_pred cccccCceeEEeccCCc-cCC
Q 036411 464 QINELSNLHFLLLRGNS-LQG 483 (487)
Q Consensus 464 ~l~~l~~L~~L~l~~~~-~~~ 483 (487)
. ..+++|+.+++++|+ +.+
T Consensus 287 ~-~~l~~L~~l~l~~N~~lc~ 306 (313)
T 1ogq_A 287 G-GNLQRFDVSAYANNKCLCG 306 (313)
T ss_dssp S-TTGGGSCGGGTCSSSEEES
T ss_pred C-ccccccChHHhcCCCCccC
Confidence 7 899999999999999 554
|
| >1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=1.9e-28 Score=226.76 Aligned_cols=289 Identities=21% Similarity=0.238 Sum_probs=188.8
Q ss_pred cccEEeCCCCcccCCcchHhhhcCCCCcEEEcccCCCCCCCCCCCCcCCCCCcEEEccCCcccccCCcccccccCceEEE
Q 036411 179 HLKFLDLSHNQLVGNFPTWLLQNNTGLEVLILWNNSFSGILPRLPNAKYDKLRHLDISTNNFSGKLPENLGIVFQKLIYL 258 (487)
Q Consensus 179 ~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L 258 (487)
+++.++++++.+. .++..+ .+.++.|+++++.+....+. .+..+++|+.|++++|.+.+..+..+. .+++|++|
T Consensus 32 ~l~~l~~~~~~l~-~lp~~~---~~~l~~L~L~~n~i~~~~~~-~~~~l~~L~~L~L~~n~l~~~~~~~~~-~l~~L~~L 105 (330)
T 1xku_A 32 HLRVVQCSDLGLE-KVPKDL---PPDTALLDLQNNKITEIKDG-DFKNLKNLHTLILINNKISKISPGAFA-PLVKLERL 105 (330)
T ss_dssp ETTEEECTTSCCC-SCCCSC---CTTCCEEECCSSCCCCBCTT-TTTTCTTCCEEECCSSCCCCBCTTTTT-TCTTCCEE
T ss_pred CCeEEEecCCCcc-ccCccC---CCCCeEEECCCCcCCEeChh-hhccCCCCCEEECCCCcCCeeCHHHhc-CCCCCCEE
Confidence 3444444444443 233221 24455555555554433322 234555666666666655533333332 24566666
Q ss_pred EccCCCCCCCcchhhhccccCcEEecccccCCCCCchhhhcCCCCCcEEECCCCccCC--CCCcCCcCCCCccEEEcCCC
Q 036411 259 DVSKNSFEGNIPYSISEMKELITLDLSRNNFSGELPRSIFSSCLSLETLDLSNNNFYG--QLFPNFMNLTHLSSLRLNNN 336 (487)
Q Consensus 259 ~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~--~~~~~~~~~~~L~~L~l~~~ 336 (487)
++++|.++ ..+..+ .++|+.|++++|.+. .++...|..+++|+.|++++|.+.. ..+..+..+++|+.|++++|
T Consensus 106 ~Ls~n~l~-~l~~~~--~~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n 181 (330)
T 1xku_A 106 YLSKNQLK-ELPEKM--PKTLQELRVHENEIT-KVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADT 181 (330)
T ss_dssp ECCSSCCS-BCCSSC--CTTCCEEECCSSCCC-BBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSS
T ss_pred ECCCCcCC-ccChhh--cccccEEECCCCccc-ccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCC
Confidence 66666655 222222 256777777777766 5665556677777777777776642 34455666777777777777
Q ss_pred cccccccccccCCCcccEEEccCCccCCCchhhhcccccccEEecCCccccCcchhhhccCcCCcEEeccCCcccccccc
Q 036411 337 HFSGKMADGLLSSTLLDVLDVSNNKLSGDIPHWIGNFSVLWLLLMSENYLQGSIPVQLGNLESLEFIDISENGLSVSMVS 416 (487)
Q Consensus 337 ~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~ 416 (487)
.+.. .+..+ .++|++|++++|++++..+..+..+++|++|++++|.+.+..+..+..+++|+.|++++|++...+..
T Consensus 182 ~l~~-l~~~~--~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~lp~~ 258 (330)
T 1xku_A 182 NITT-IPQGL--PPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVKVPGG 258 (330)
T ss_dssp CCCS-CCSSC--CTTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCSSCCTT
T ss_pred cccc-CCccc--cccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCceeChhhccCCCCCCEEECCCCcCccCChh
Confidence 7663 33322 26788888888888766677888888888888888888766666788888888888888888877777
Q ss_pred ccCCCcceEEEeeCcccCCcchHhhhc------cCcceEEeCCCCccc--ccCcccccccCceeEEeccCCc
Q 036411 417 LSNLSSVKHIYLHNNAINGLIPIALLR------SSTLLTLDLRDNKFF--GRIPHQINELSNLHFLLLRGNS 480 (487)
Q Consensus 417 ~~~~~~L~~L~l~~~~~~~~~~~~~~~------~~~L~~L~l~~~~~~--~~~~~~l~~l~~L~~L~l~~~~ 480 (487)
+..+++|++|++++|.+++..+..+.. ..+++.|++++|++. ...|..+..+++++.+++++|+
T Consensus 259 l~~l~~L~~L~l~~N~i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~~~~~~i~~~~f~~~~~l~~l~L~~N~ 330 (330)
T 1xku_A 259 LADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQLGNYK 330 (330)
T ss_dssp TTTCSSCCEEECCSSCCCCCCTTSSSCSSCCTTSCCCSEEECCSSSSCGGGSCGGGGTTCCCGGGEEC----
T ss_pred hccCCCcCEEECCCCcCCccChhhcCCcccccccccccceEeecCcccccccCccccccccceeEEEecccC
Confidence 778888999999999888776666542 378899999999985 3566788899999999999885
|
| >2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} | Back alignment and structure |
|---|
Probab=99.96 E-value=1.3e-28 Score=228.09 Aligned_cols=288 Identities=21% Similarity=0.264 Sum_probs=217.7
Q ss_pred cccEEeCCCCcccCCcchHhhhcCCCCcEEEcccCCCCCCCCCCCCcCCCCCcEEEccCCcccccCCcccccccCceEEE
Q 036411 179 HLKFLDLSHNQLVGNFPTWLLQNNTGLEVLILWNNSFSGILPRLPNAKYDKLRHLDISTNNFSGKLPENLGIVFQKLIYL 258 (487)
Q Consensus 179 ~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L 258 (487)
+++.++++++.+. .+|..+ .+.++.|++++|.+....+. .+..+++|+.|++++|.+.+..+..+. .+++|++|
T Consensus 34 ~l~~l~~~~~~l~-~ip~~~---~~~l~~L~l~~n~i~~~~~~-~~~~l~~L~~L~L~~n~l~~~~~~~~~-~l~~L~~L 107 (332)
T 2ft3_A 34 HLRVVQCSDLGLK-AVPKEI---SPDTTLLDLQNNDISELRKD-DFKGLQHLYALVLVNNKISKIHEKAFS-PLRKLQKL 107 (332)
T ss_dssp ETTEEECCSSCCS-SCCSCC---CTTCCEEECCSSCCCEECTT-TTTTCTTCCEEECCSSCCCEECGGGST-TCTTCCEE
T ss_pred cCCEEECCCCCcc-ccCCCC---CCCCeEEECCCCcCCccCHh-HhhCCCCCcEEECCCCccCccCHhHhh-CcCCCCEE
Confidence 4666666666654 444432 25677777777766544333 346677788888888877744344433 45788888
Q ss_pred EccCCCCCCCcchhhhccccCcEEecccccCCCCCchhhhcCCCCCcEEECCCCccCC--CCCcCCcCCCCccEEEcCCC
Q 036411 259 DVSKNSFEGNIPYSISEMKELITLDLSRNNFSGELPRSIFSSCLSLETLDLSNNNFYG--QLFPNFMNLTHLSSLRLNNN 336 (487)
Q Consensus 259 ~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~--~~~~~~~~~~~L~~L~l~~~ 336 (487)
++++|.+. ..+..+. ++|+.|++++|.+. .++...|..+++|+.|++++|.+.. ..+..+..+ +|+.|++++|
T Consensus 108 ~L~~n~l~-~l~~~~~--~~L~~L~l~~n~i~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~n 182 (332)
T 2ft3_A 108 YISKNHLV-EIPPNLP--SSLVELRIHDNRIR-KVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEA 182 (332)
T ss_dssp ECCSSCCC-SCCSSCC--TTCCEEECCSSCCC-CCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCCSS
T ss_pred ECCCCcCC-ccCcccc--ccCCEEECCCCccC-ccCHhHhCCCccCCEEECCCCccccCCCCcccccCC-ccCEEECcCC
Confidence 88888877 3333332 78888889888887 7777777888899999998888753 445566666 8899999998
Q ss_pred cccccccccccCCCcccEEEccCCccCCCchhhhcccccccEEecCCccccCcchhhhccCcCCcEEeccCCcccccccc
Q 036411 337 HFSGKMADGLLSSTLLDVLDVSNNKLSGDIPHWIGNFSVLWLLLMSENYLQGSIPVQLGNLESLEFIDISENGLSVSMVS 416 (487)
Q Consensus 337 ~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~ 416 (487)
.+.+ .+..+ .++|++|++++|++.+..+..+..+++|++|++++|.+.+..+..+..+++|+.|++++|++...+..
T Consensus 183 ~l~~-l~~~~--~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~lp~~ 259 (332)
T 2ft3_A 183 KLTG-IPKDL--PETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLSRVPAG 259 (332)
T ss_dssp BCSS-CCSSS--CSSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSCCCBCCTT
T ss_pred CCCc-cCccc--cCCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCCcCeecChh
Confidence 8874 33333 26899999999999887778899999999999999999877777888999999999999999877777
Q ss_pred ccCCCcceEEEeeCcccCCcchHhhhc------cCcceEEeCCCCccc--ccCcccccccCceeEEeccCCc
Q 036411 417 LSNLSSVKHIYLHNNAINGLIPIALLR------SSTLLTLDLRDNKFF--GRIPHQINELSNLHFLLLRGNS 480 (487)
Q Consensus 417 ~~~~~~L~~L~l~~~~~~~~~~~~~~~------~~~L~~L~l~~~~~~--~~~~~~l~~l~~L~~L~l~~~~ 480 (487)
+..+++|++|++++|.+++..+..+.. ..+|+.|++++|++. ...+..+..+++|+.+++++|+
T Consensus 260 l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~~~~~~~~~~~~~~l~~L~~l~l~~n~ 331 (332)
T 2ft3_A 260 LPDLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQFGNYK 331 (332)
T ss_dssp GGGCTTCCEEECCSSCCCBCCTTSSSCSSCCSSSCCBSEEECCSSSSCGGGSCGGGGTTBCCSTTEEC----
T ss_pred hhcCccCCEEECCCCCCCccChhHccccccccccccccceEeecCcccccccCcccccccchhhhhhccccc
Confidence 889999999999999999877666654 367999999999986 6777889999999999999986
|
| >1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=2.5e-27 Score=219.30 Aligned_cols=289 Identities=22% Similarity=0.262 Sum_probs=229.3
Q ss_pred CCceeecccccccccccccccCCcccEEeCCCCcccCCcchHhhhcCCCCcEEEcccCCCCCCCCCCCCcCCCCCcEEEc
Q 036411 156 PLKVLQLSHCHLNVNSSFLLHQHHLKFLDLSHNQLVGNFPTWLLQNNTGLEVLILWNNSFSGILPRLPNAKYDKLRHLDI 235 (487)
Q Consensus 156 ~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l 235 (487)
+++.++++++.+..++..+ .++++.|++++|.+. .++...+..+++|++|++++|.+....+. .+..+++|+.|++
T Consensus 32 ~l~~l~~~~~~l~~lp~~~--~~~l~~L~L~~n~i~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~-~~~~l~~L~~L~L 107 (330)
T 1xku_A 32 HLRVVQCSDLGLEKVPKDL--PPDTALLDLQNNKIT-EIKDGDFKNLKNLHTLILINNKISKISPG-AFAPLVKLERLYL 107 (330)
T ss_dssp ETTEEECTTSCCCSCCCSC--CTTCCEEECCSSCCC-CBCTTTTTTCTTCCEEECCSSCCCCBCTT-TTTTCTTCCEEEC
T ss_pred CCeEEEecCCCccccCccC--CCCCeEEECCCCcCC-EeChhhhccCCCCCEEECCCCcCCeeCHH-HhcCCCCCCEEEC
Confidence 5777888777776666544 367888999988887 45555566888999999998888765444 4577889999999
Q ss_pred cCCcccccCCcccccccCceEEEEccCCCCCCCcchhhhccccCcEEecccccCCC-CCchhhhcCCCCCcEEECCCCcc
Q 036411 236 STNNFSGKLPENLGIVFQKLIYLDVSKNSFEGNIPYSISEMKELITLDLSRNNFSG-ELPRSIFSSCLSLETLDLSNNNF 314 (487)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~-~~~~~~~~~~~~L~~L~l~~~~~ 314 (487)
++|.+. .++..+. ++|++|++++|.+.+..+..+..+++|+.|++++|.+.. ......|..+++|+.|++++|.+
T Consensus 108 s~n~l~-~l~~~~~---~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l 183 (330)
T 1xku_A 108 SKNQLK-ELPEKMP---KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNI 183 (330)
T ss_dssp CSSCCS-BCCSSCC---TTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCC
T ss_pred CCCcCC-ccChhhc---ccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCcc
Confidence 999887 5565543 689999999999987777778899999999999998852 14445578899999999999988
Q ss_pred CCCCCcCCcCCCCccEEEcCCCcccccccccccCCCcccEEEccCCccCCCchhhhcccccccEEecCCccccCcchhhh
Q 036411 315 YGQLFPNFMNLTHLSSLRLNNNHFSGKMADGLLSSTLLDVLDVSNNKLSGDIPHWIGNFSVLWLLLMSENYLQGSIPVQL 394 (487)
Q Consensus 315 ~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~ 394 (487)
.+. +..+ .++|++|++++|.+.+..+..+..+++|+.|++++|.+++..+..+..+++|++|++++|.+. ..|..+
T Consensus 184 ~~l-~~~~--~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l 259 (330)
T 1xku_A 184 TTI-PQGL--PPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGL 259 (330)
T ss_dssp CSC-CSSC--CTTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCS-SCCTTT
T ss_pred ccC-Cccc--cccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCceeChhhccCCCCCCEEECCCCcCc-cCChhh
Confidence 753 3333 288999999999998777788889999999999999998777778999999999999999988 677788
Q ss_pred ccCcCCcEEeccCCcccccccc-cc------CCCcceEEEeeCcccCC--cchHhhhccCcceEEeCCCCc
Q 036411 395 GNLESLEFIDISENGLSVSMVS-LS------NLSSVKHIYLHNNAING--LIPIALLRSSTLLTLDLRDNK 456 (487)
Q Consensus 395 ~~~~~L~~l~l~~~~~~~~~~~-~~------~~~~L~~L~l~~~~~~~--~~~~~~~~~~~L~~L~l~~~~ 456 (487)
..+++|+.|++++|+++..... +. ..+.++.+++.+|.+.. ..+.++..+.+++.+++++|+
T Consensus 260 ~~l~~L~~L~l~~N~i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~~~~~~i~~~~f~~~~~l~~l~L~~N~ 330 (330)
T 1xku_A 260 ADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQLGNYK 330 (330)
T ss_dssp TTCSSCCEEECCSSCCCCCCTTSSSCSSCCTTSCCCSEEECCSSSSCGGGSCGGGGTTCCCGGGEEC----
T ss_pred ccCCCcCEEECCCCcCCccChhhcCCcccccccccccceEeecCcccccccCccccccccceeEEEecccC
Confidence 8999999999999998644332 22 24789999999999864 567788889999999999884
|
| >1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 | Back alignment and structure |
|---|
Probab=99.96 E-value=3.2e-28 Score=222.84 Aligned_cols=232 Identities=29% Similarity=0.419 Sum_probs=211.6
Q ss_pred CceEEEEccCCCCCC--CcchhhhccccCcEEeccc-ccCCCCCchhhhcCCCCCcEEECCCCccCCCCCcCCcCCCCcc
Q 036411 253 QKLIYLDVSKNSFEG--NIPYSISEMKELITLDLSR-NNFSGELPRSIFSSCLSLETLDLSNNNFYGQLFPNFMNLTHLS 329 (487)
Q Consensus 253 ~~L~~L~l~~~~~~~--~~~~~~~~~~~L~~L~l~~-~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~ 329 (487)
.++++|+++++.+.+ ..+..+..+++|+.|++++ |.+.+.+|.. |..+++|++|++++|.+.+..+..+..+++|+
T Consensus 50 ~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~-l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~ 128 (313)
T 1ogq_A 50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPA-IAKLTQLHYLYITHTNVSGAIPDFLSQIKTLV 128 (313)
T ss_dssp CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGG-GGGCTTCSEEEEEEECCEEECCGGGGGCTTCC
T ss_pred ceEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChh-HhcCCCCCEEECcCCeeCCcCCHHHhCCCCCC
Confidence 579999999999987 7788999999999999995 8887677765 58899999999999999878888899999999
Q ss_pred EEEcCCCcccccccccccCCCcccEEEccCCccCCCchhhhcccc-cccEEecCCccccCcchhhhccCcCCcEEeccCC
Q 036411 330 SLRLNNNHFSGKMADGLLSSTLLDVLDVSNNKLSGDIPHWIGNFS-VLWLLLMSENYLQGSIPVQLGNLESLEFIDISEN 408 (487)
Q Consensus 330 ~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~-~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~ 408 (487)
+|++++|.+.+..+..+..+++|++|++++|++++.+|..+..++ +|++|++++|.+.+..|..+..++ |+.|++++|
T Consensus 129 ~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L~~L~Ls~N 207 (313)
T 1ogq_A 129 TLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRN 207 (313)
T ss_dssp EEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCC-CSEEECCSS
T ss_pred EEeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCc-ccEEECcCC
Confidence 999999999988888999999999999999999888899999998 999999999999888888888887 999999999
Q ss_pred ccc-cccccccCCCcceEEEeeCcccCCcchHhhhccCcceEEeCCCCcccccCcccccccCceeEEeccCCccCCCCCC
Q 036411 409 GLS-VSMVSLSNLSSVKHIYLHNNAINGLIPIALLRSSTLLTLDLRDNKFFGRIPHQINELSNLHFLLLRGNSLQGRIPN 487 (487)
Q Consensus 409 ~~~-~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~p~ 487 (487)
.+. ..+..+..+++|+.|++++|.++...+. +..+++|+.|++++|.+++.+|..+..+++|+.|++++|++.+.+|+
T Consensus 208 ~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~-~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~ 286 (313)
T 1ogq_A 208 MLEGDASVLFGSDKNTQKIHLAKNSLAFDLGK-VGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQ 286 (313)
T ss_dssp EEEECCGGGCCTTSCCSEEECCSSEECCBGGG-CCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCC
T ss_pred cccCcCCHHHhcCCCCCEEECCCCceeeecCc-ccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCcccccCCC
Confidence 986 4555677899999999999999876655 77789999999999999989999999999999999999999999985
|
| >2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} | Back alignment and structure |
|---|
Probab=99.95 E-value=2.3e-27 Score=219.59 Aligned_cols=288 Identities=21% Similarity=0.275 Sum_probs=223.6
Q ss_pred CCceeecccccccccccccccCCcccEEeCCCCcccCCcchHhhhcCCCCcEEEcccCCCCCCCCCCCCcCCCCCcEEEc
Q 036411 156 PLKVLQLSHCHLNVNSSFLLHQHHLKFLDLSHNQLVGNFPTWLLQNNTGLEVLILWNNSFSGILPRLPNAKYDKLRHLDI 235 (487)
Q Consensus 156 ~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l 235 (487)
.++.++++++.+..++..+ .++++.|++++|.+. .++...+..+++|++|++++|.+....+. .+..+++|+.|++
T Consensus 34 ~l~~l~~~~~~l~~ip~~~--~~~l~~L~l~~n~i~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~-~~~~l~~L~~L~L 109 (332)
T 2ft3_A 34 HLRVVQCSDLGLKAVPKEI--SPDTTLLDLQNNDIS-ELRKDDFKGLQHLYALVLVNNKISKIHEK-AFSPLRKLQKLYI 109 (332)
T ss_dssp ETTEEECCSSCCSSCCSCC--CTTCCEEECCSSCCC-EECTTTTTTCTTCCEEECCSSCCCEECGG-GSTTCTTCCEEEC
T ss_pred cCCEEECCCCCccccCCCC--CCCCeEEECCCCcCC-ccCHhHhhCCCCCcEEECCCCccCccCHh-HhhCcCCCCEEEC
Confidence 5777888877776666554 367888888888876 44444456788888888888877655443 4467888999999
Q ss_pred cCCcccccCCcccccccCceEEEEccCCCCCCCcchhhhccccCcEEecccccCCC-CCchhhhcCCCCCcEEECCCCcc
Q 036411 236 STNNFSGKLPENLGIVFQKLIYLDVSKNSFEGNIPYSISEMKELITLDLSRNNFSG-ELPRSIFSSCLSLETLDLSNNNF 314 (487)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~-~~~~~~~~~~~~L~~L~l~~~~~ 314 (487)
++|.+. .++..+. ++|++|++++|.+.+..+..+..+++|+.|++++|.+.. ......|..+ +|+.|++++|.+
T Consensus 110 ~~n~l~-~l~~~~~---~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~n~l 184 (332)
T 2ft3_A 110 SKNHLV-EIPPNLP---SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEAKL 184 (332)
T ss_dssp CSSCCC-SCCSSCC---TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCCSSBC
T ss_pred CCCcCC-ccCcccc---ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCC-ccCEEECcCCCC
Confidence 888877 5565543 689999999999886666678889999999999998852 1344456666 899999999988
Q ss_pred CCCCCcCCcCCCCccEEEcCCCcccccccccccCCCcccEEEccCCccCCCchhhhcccccccEEecCCccccCcchhhh
Q 036411 315 YGQLFPNFMNLTHLSSLRLNNNHFSGKMADGLLSSTLLDVLDVSNNKLSGDIPHWIGNFSVLWLLLMSENYLQGSIPVQL 394 (487)
Q Consensus 315 ~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~ 394 (487)
.+. +..+. ++|++|++++|.+.+..+..+..+++|+.|++++|++.+..+..+..+++|++|++++|.+. ..|..+
T Consensus 185 ~~l-~~~~~--~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l 260 (332)
T 2ft3_A 185 TGI-PKDLP--ETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLS-RVPAGL 260 (332)
T ss_dssp SSC-CSSSC--SSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSCCC-BCCTTG
T ss_pred Ccc-Ccccc--CCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCCcCe-ecChhh
Confidence 753 33332 78999999999998777778888999999999999998877778999999999999999988 677778
Q ss_pred ccCcCCcEEeccCCccccccc-cccC------CCcceEEEeeCcccC--CcchHhhhccCcceEEeCCCCc
Q 036411 395 GNLESLEFIDISENGLSVSMV-SLSN------LSSVKHIYLHNNAIN--GLIPIALLRSSTLLTLDLRDNK 456 (487)
Q Consensus 395 ~~~~~L~~l~l~~~~~~~~~~-~~~~------~~~L~~L~l~~~~~~--~~~~~~~~~~~~L~~L~l~~~~ 456 (487)
..+++|+.|++++|+++.... .+.. .+.|+.|++.+|.+. ...+.++..+++|+.+++++|+
T Consensus 261 ~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~~~~~~~~~~~~~~l~~L~~l~l~~n~ 331 (332)
T 2ft3_A 261 PDLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQFGNYK 331 (332)
T ss_dssp GGCTTCCEEECCSSCCCBCCTTSSSCSSCCSSSCCBSEEECCSSSSCGGGSCGGGGTTBCCSTTEEC----
T ss_pred hcCccCCEEECCCCCCCccChhHccccccccccccccceEeecCcccccccCcccccccchhhhhhccccc
Confidence 899999999999999864432 2222 477999999999987 5677889999999999999885
|
| >3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* | Back alignment and structure |
|---|
Probab=99.95 E-value=6.6e-29 Score=249.19 Aligned_cols=322 Identities=11% Similarity=0.024 Sum_probs=221.4
Q ss_pred CCCCCceeeccccccc-----ccccccccCCcccEEeCCCCcccCCcchHhhhcCCCCcEEEcccCCCCC--CCCCCCCc
Q 036411 153 PTYPLKVLQLSHCHLN-----VNSSFLLHQHHLKFLDLSHNQLVGNFPTWLLQNNTGLEVLILWNNSFSG--ILPRLPNA 225 (487)
Q Consensus 153 ~~~~L~~L~l~~~~~~-----~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~--~~~~~~~~ 225 (487)
.+++|++|+++.+.++ .++..+..+++|+.|++++|.+.+ ++ ..+..+++|+.+.+....... ........
T Consensus 190 ~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~-l~-~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~ 267 (592)
T 3ogk_B 190 HNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILE-LV-GFFKAAANLEEFCGGSLNEDIGMPEKYMNLV 267 (592)
T ss_dssp HCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBGGG-GH-HHHHHCTTCCEEEECBCCCCTTCTTSSSCCC
T ss_pred cCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccHHH-HH-HHHhhhhHHHhhcccccccccchHHHHHHhh
Confidence 4456666666665553 333445678889999998887763 44 455678999999887532211 11112346
Q ss_pred CCCCCcEEEccCCcccccCCcccccccCceEEEEccCCCCCCCcc-hhhhccccCcEEecccccCCCCCchhhhcCCCCC
Q 036411 226 KYDKLRHLDISTNNFSGKLPENLGIVFQKLIYLDVSKNSFEGNIP-YSISEMKELITLDLSRNNFSGELPRSIFSSCLSL 304 (487)
Q Consensus 226 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L 304 (487)
.+++|+.+.+..+... .++. +...+++|++|++++|.+++... ..+..+++|+.|++. +.+.+......+..+++|
T Consensus 268 ~~~~L~~L~l~~~~~~-~l~~-~~~~~~~L~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~-~~~~~~~l~~~~~~~~~L 344 (592)
T 3ogk_B 268 FPRKLCRLGLSYMGPN-EMPI-LFPFAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETR-NVIGDRGLEVLAQYCKQL 344 (592)
T ss_dssp CCTTCCEEEETTCCTT-TGGG-GGGGGGGCCEEEETTCCCCHHHHHHHHTTCTTCCEEEEE-GGGHHHHHHHHHHHCTTC
T ss_pred ccccccccCccccchh-HHHH-HHhhcCCCcEEecCCCcCCHHHHHHHHHhCcCCCEEecc-CccCHHHHHHHHHhCCCC
Confidence 6788999998875322 3333 34456899999999998654322 346789999999998 444323344455778999
Q ss_pred cEEECCC----------C-ccCCCCCcC-CcCCCCccEEEcCCCcccccccccccC-CCcccEEEcc----CCccCCC--
Q 036411 305 ETLDLSN----------N-NFYGQLFPN-FMNLTHLSSLRLNNNHFSGKMADGLLS-STLLDVLDVS----NNKLSGD-- 365 (487)
Q Consensus 305 ~~L~l~~----------~-~~~~~~~~~-~~~~~~L~~L~l~~~~~~~~~~~~~~~-~~~L~~L~l~----~~~~~~~-- 365 (487)
++|++.+ | .+++..... ...+++|++|++..+.+++.....+.. +++|+.|+++ .+.+++.
T Consensus 345 ~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~ 424 (592)
T 3ogk_B 345 KRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPL 424 (592)
T ss_dssp CEEEEECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEEEESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCCC
T ss_pred CEEEeecCccccccccccCccCHHHHHHHHhhCccCeEEEeecCCccHHHHHHHHhhCCCCcEEEEeecCCCccccCchH
Confidence 9999994 3 343221122 345899999999888887666655554 8899999997 4566643
Q ss_pred ---chhhhcccccccEEecCCcc--ccCcchhhhc-cCcCCcEEeccCCcccc--ccccccCCCcceEEEeeCcccCCc-
Q 036411 366 ---IPHWIGNFSVLWLLLMSENY--LQGSIPVQLG-NLESLEFIDISENGLSV--SMVSLSNLSSVKHIYLHNNAINGL- 436 (487)
Q Consensus 366 ---~~~~~~~~~~L~~L~l~~~~--~~~~~~~~~~-~~~~L~~l~l~~~~~~~--~~~~~~~~~~L~~L~l~~~~~~~~- 436 (487)
++..+..+++|++|+++.|. +++.....+. .+++|+.|++++|+++. ....+..+++|++|++++|.++..
T Consensus 425 ~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~ 504 (592)
T 3ogk_B 425 DNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCFSERA 504 (592)
T ss_dssp HHHHHHHHHHCTTCCEEEEECCGGGCCHHHHHHHHHSCTTCCEEEECSCCSSHHHHHHHHTCCTTCCEEEEESCCCBHHH
T ss_pred HHHHHHHHHhCCCCCEEEEecCCCCccHHHHHHHHHhCccceEeeccCCCCCHHHHHHHHhcCcccCeeeccCCCCcHHH
Confidence 45557789999999997654 5544444443 48999999999999853 233445789999999999998654
Q ss_pred chHhhhccCcceEEeCCCCcccccCcccc-cccCceeEEeccCC
Q 036411 437 IPIALLRSSTLLTLDLRDNKFFGRIPHQI-NELSNLHFLLLRGN 479 (487)
Q Consensus 437 ~~~~~~~~~~L~~L~l~~~~~~~~~~~~l-~~l~~L~~L~l~~~ 479 (487)
.+.....+++|+.|++++|++++.....+ ..+|.+....+..+
T Consensus 505 ~~~~~~~l~~L~~L~ls~n~it~~~~~~l~~~~p~l~~~~~~~~ 548 (592)
T 3ogk_B 505 IAAAVTKLPSLRYLWVQGYRASMTGQDLMQMARPYWNIELIPSR 548 (592)
T ss_dssp HHHHHHHCSSCCEEEEESCBCCTTCTTGGGGCCTTEEEEEECCC
T ss_pred HHHHHHhcCccCeeECcCCcCCHHHHHHHHHhCCCcEEEEecCc
Confidence 33445678999999999999986655544 47888877766654
|
| >3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* | Back alignment and structure |
|---|
Probab=99.95 E-value=5.3e-30 Score=257.13 Aligned_cols=422 Identities=14% Similarity=0.048 Sum_probs=286.5
Q ss_pred ccccccccEEecCCccccc---cc------------cccccCCCCCcEEEccCccccCCcccccccC-CCC-CcEEECCC
Q 036411 4 FGSLKQLKILNLGFNFFID---SI------------LPYLNTLTSLTTLNLRYNKIEGSRTKQGICN-LKN-LLELDLSS 66 (487)
Q Consensus 4 ~~~~~~L~~L~l~~~~~~~---~~------------~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~-~~~-L~~L~l~~ 66 (487)
+..+++|+.|++++|.... .. ......+++|++|+++++.+++.. ...+.. +++ |++|++++
T Consensus 69 ~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~i~~~~-~~~l~~~~~~~L~~L~L~~ 147 (592)
T 3ogk_B 69 SRRFPNLRSLKLKGKPRAAMFNLIPENWGGYVTPWVTEISNNLRQLKSVHFRRMIVSDLD-LDRLAKARADDLETLKLDK 147 (592)
T ss_dssp HHHCTTCSEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCBCCHHH-HHHHHHHHGGGCCEEEEES
T ss_pred HHhCCCCeEEEecCCcchhhcccccccccccchHHHHHHHhhCCCCCeEEeeccEecHHH-HHHHHHhccccCcEEECcC
Confidence 5678889999997753211 11 112237899999999999775332 223433 444 99999998
Q ss_pred Ccc-CC-CcchhccCCCCccEEeccCccccCC----ccccccCCCCCcEEeccccccC---cchhHHHhhccccceEEEe
Q 036411 67 NNF-EG-HLPQCLNNLTHLKVLDISYNQLSGN----FPSVLTNLTSLEYLDLSFIDFQ---GTFLINSLANHSKLEVLVL 137 (487)
Q Consensus 67 ~~~-~~-~~~~~~~~l~~L~~L~l~~~~~~~~----~~~~~~~~~~L~~L~l~~~~~~---~~~~~~~~~~~~~L~~l~l 137 (487)
|.. .. .++....++++|++|++++|.+++. ++..+..+++|++|+++++.+. .......+..+++|+.|++
T Consensus 148 ~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L 227 (592)
T 3ogk_B 148 CSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKV 227 (592)
T ss_dssp CEEEEHHHHHHHHHHCTTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEEC
T ss_pred CCCcCHHHHHHHHhhCCCCCEEECccccccCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEec
Confidence 863 21 1223345789999999999987654 4445567899999999988875 2344566788999999999
Q ss_pred ccCCCccccccccccCCCCCceeecccccc----cccccccccCCcccEEeCCCCcccCCcchHhhhcCCCCcEEEcccC
Q 036411 138 SSGNDMLQVKTENWLPTYPLKVLQLSHCHL----NVNSSFLLHQHHLKFLDLSHNQLVGNFPTWLLQNNTGLEVLILWNN 213 (487)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~----~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~ 213 (487)
.++... .++ ..+..+++|+++++..... ......+..+++|+.++++++.. ......+..+++|++|++++|
T Consensus 228 ~~~~~~-~l~-~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~--~~l~~~~~~~~~L~~L~Ls~~ 303 (592)
T 3ogk_B 228 GDFEIL-ELV-GFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGP--NEMPILFPFAAQIRKLDLLYA 303 (592)
T ss_dssp SSCBGG-GGH-HHHHHCTTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTCCT--TTGGGGGGGGGGCCEEEETTC
T ss_pred cCccHH-HHH-HHHhhhhHHHhhcccccccccchHHHHHHhhccccccccCccccch--hHHHHHHhhcCCCcEEecCCC
Confidence 875432 222 4466778899999875332 22334566778999999887533 233344557899999999998
Q ss_pred CCCCCCCCCCCcCCCCCcEEEccCCcccccCCcccccccCceEEEEccC-----------CCCCCC-cchhhhccccCcE
Q 036411 214 SFSGILPRLPNAKYDKLRHLDISTNNFSGKLPENLGIVFQKLIYLDVSK-----------NSFEGN-IPYSISEMKELIT 281 (487)
Q Consensus 214 ~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~-----------~~~~~~-~~~~~~~~~~L~~ 281 (487)
.+...........+++|+.|++. +.+.+.....+...+++|++|++++ +.+++. .......+++|+.
T Consensus 304 ~l~~~~~~~~~~~~~~L~~L~L~-~~~~~~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~ 382 (592)
T 3ogk_B 304 LLETEDHCTLIQKCPNLEVLETR-NVIGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEY 382 (592)
T ss_dssp CCCHHHHHHHHTTCTTCCEEEEE-GGGHHHHHHHHHHHCTTCCEEEEECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSE
T ss_pred cCCHHHHHHHHHhCcCCCEEecc-CccCHHHHHHHHHhCCCCCEEEeecCccccccccccCccCHHHHHHHHhhCccCeE
Confidence 75432211123678899999998 4444444444555678999999994 344422 2223456899999
Q ss_pred EecccccCCCCCchhhhcCCCCCcEEECC----CCccCCCC-----CcCCcCCCCccEEEcCCCc--ccccccccc-cCC
Q 036411 282 LDLSRNNFSGELPRSIFSSCLSLETLDLS----NNNFYGQL-----FPNFMNLTHLSSLRLNNNH--FSGKMADGL-LSS 349 (487)
Q Consensus 282 L~l~~~~~~~~~~~~~~~~~~~L~~L~l~----~~~~~~~~-----~~~~~~~~~L~~L~l~~~~--~~~~~~~~~-~~~ 349 (487)
|++..+.+++.....+...+++|+.|++. .+.+++.. ...+..+++|++|++++|. ++......+ ..+
T Consensus 383 L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~~~~~~ 462 (592)
T 3ogk_B 383 MAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYS 462 (592)
T ss_dssp EEEEESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCCCHHHHHHHHHHCTTCCEEEEECCGGGCCHHHHHHHHHSC
T ss_pred EEeecCCccHHHHHHHHhhCCCCcEEEEeecCCCccccCchHHHHHHHHHHhCCCCCEEEEecCCCCccHHHHHHHHHhC
Confidence 99988888755544544458999999996 34454421 1224568999999997654 444433333 347
Q ss_pred CcccEEEccCCccCC-CchhhhcccccccEEecCCccccCc-chhhhccCcCCcEEeccCCccccc-cccc-cCCCcceE
Q 036411 350 TLLDVLDVSNNKLSG-DIPHWIGNFSVLWLLLMSENYLQGS-IPVQLGNLESLEFIDISENGLSVS-MVSL-SNLSSVKH 425 (487)
Q Consensus 350 ~~L~~L~l~~~~~~~-~~~~~~~~~~~L~~L~l~~~~~~~~-~~~~~~~~~~L~~l~l~~~~~~~~-~~~~-~~~~~L~~ 425 (487)
++|+.|++++|++++ ..+..+..+++|++|++++|.+++. .+..+..+++|+.|++++|+++.. ...+ ..+|.++.
T Consensus 463 ~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~ls~n~it~~~~~~l~~~~p~l~~ 542 (592)
T 3ogk_B 463 PNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCFSERAIAAAVTKLPSLRYLWVQGYRASMTGQDLMQMARPYWNI 542 (592)
T ss_dssp TTCCEEEECSCCSSHHHHHHHHTCCTTCCEEEEESCCCBHHHHHHHHHHCSSCCEEEEESCBCCTTCTTGGGGCCTTEEE
T ss_pred ccceEeeccCCCCCHHHHHHHHhcCcccCeeeccCCCCcHHHHHHHHHhcCccCeeECcCCcCCHHHHHHHHHhCCCcEE
Confidence 899999999999875 3455668899999999999997644 334456789999999999997532 2222 26788877
Q ss_pred EEeeCc
Q 036411 426 IYLHNN 431 (487)
Q Consensus 426 L~l~~~ 431 (487)
..+..+
T Consensus 543 ~~~~~~ 548 (592)
T 3ogk_B 543 ELIPSR 548 (592)
T ss_dssp EEECCC
T ss_pred EEecCc
Confidence 766654
|
| >2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.95 E-value=2.3e-27 Score=221.57 Aligned_cols=257 Identities=22% Similarity=0.227 Sum_probs=191.9
Q ss_pred CCCcEEEccCCcccccCCcccccccCceEEEEccCCCCCCCcchhhhccccCcEEecccccCCCCCchhhhcCCCCCcEE
Q 036411 228 DKLRHLDISTNNFSGKLPENLGIVFQKLIYLDVSKNSFEGNIPYSISEMKELITLDLSRNNFSGELPRSIFSSCLSLETL 307 (487)
Q Consensus 228 ~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L 307 (487)
++++.|+++++.+.+ ++......+++|++|++++|.+.+..+..+..+++|+.|++++|.+. .++...|.++++|++|
T Consensus 52 ~~L~~L~l~~n~i~~-~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~-~~~~~~~~~l~~L~~L 129 (353)
T 2z80_A 52 EAVKSLDLSNNRITY-ISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLS-NLSSSWFKPLSSLTFL 129 (353)
T ss_dssp TTCCEEECTTSCCCE-ECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCS-SCCHHHHTTCTTCSEE
T ss_pred ccCcEEECCCCcCcc-cCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCcCC-cCCHhHhCCCccCCEE
Confidence 467777777777663 33323334577888888888777655666778888888888888887 6777767888888888
Q ss_pred ECCCCccCCCCC-cCCcCCCCccEEEcCCC-cccccccccccCCCcccEEEccCCccCCCchhhhcccccccEEecCCcc
Q 036411 308 DLSNNNFYGQLF-PNFMNLTHLSSLRLNNN-HFSGKMADGLLSSTLLDVLDVSNNKLSGDIPHWIGNFSVLWLLLMSENY 385 (487)
Q Consensus 308 ~l~~~~~~~~~~-~~~~~~~~L~~L~l~~~-~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 385 (487)
++++|.+.+... ..+..+++|++|++++| .+....+..+..+++|++|++++|++.+..+..+..+++|++|++++|.
T Consensus 130 ~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~ 209 (353)
T 2z80_A 130 NLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQ 209 (353)
T ss_dssp ECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSC
T ss_pred ECCCCCCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCcCccCHHHHhccccCCeecCCCCc
Confidence 888888775444 46777888888888887 4555556677788888888888888877778888888888888888888
Q ss_pred ccCcchhhhccCcCCcEEeccCCccccccc----cccCCCcceEEEeeCcccCC----cchHhhhccCcceEEeCCCCcc
Q 036411 386 LQGSIPVQLGNLESLEFIDISENGLSVSMV----SLSNLSSVKHIYLHNNAING----LIPIALLRSSTLLTLDLRDNKF 457 (487)
Q Consensus 386 ~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~----~~~~~~~L~~L~l~~~~~~~----~~~~~~~~~~~L~~L~l~~~~~ 457 (487)
+.......+..+++|+.|++++|.+..... .....+.++.++++++.+.+ ..+.++..+++|+.|++++|++
T Consensus 210 l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~~~~l~~l~L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N~l 289 (353)
T 2z80_A 210 HILLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRNQL 289 (353)
T ss_dssp STTHHHHHHHHTTTEEEEEEESCBCTTCCCC------CCCCCCEEEEESCBCCHHHHHHHHHHHHTCTTCCEEECCSSCC
T ss_pred cccchhhhhhhcccccEEECCCCccccccccccccccccchhhccccccccccCcchhhhHHHHhcccCCCEEECCCCCC
Confidence 764333345567888888888888753221 12245678888888887765 2466778889999999999999
Q ss_pred cccCcccccccCceeEEeccCCccCCCCC
Q 036411 458 FGRIPHQINELSNLHFLLLRGNSLQGRIP 486 (487)
Q Consensus 458 ~~~~~~~l~~l~~L~~L~l~~~~~~~~~p 486 (487)
+...+..++.+++|++|++++|++.+..|
T Consensus 290 ~~i~~~~~~~l~~L~~L~L~~N~~~~~~~ 318 (353)
T 2z80_A 290 KSVPDGIFDRLTSLQKIWLHTNPWDCSCP 318 (353)
T ss_dssp CCCCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred CccCHHHHhcCCCCCEEEeeCCCccCcCC
Confidence 74444456899999999999999988754
|
| >2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* | Back alignment and structure |
|---|
Probab=99.95 E-value=2.4e-29 Score=252.58 Aligned_cols=109 Identities=13% Similarity=0.116 Sum_probs=59.5
Q ss_pred ccCCCcccEEEccCCccCCCchhhhcc-cccccEEecCCccccCcchhhh-ccCcCCcEEeccCCccccc--cccccCCC
Q 036411 346 LLSSTLLDVLDVSNNKLSGDIPHWIGN-FSVLWLLLMSENYLQGSIPVQL-GNLESLEFIDISENGLSVS--MVSLSNLS 421 (487)
Q Consensus 346 ~~~~~~L~~L~l~~~~~~~~~~~~~~~-~~~L~~L~l~~~~~~~~~~~~~-~~~~~L~~l~l~~~~~~~~--~~~~~~~~ 421 (487)
+..+++|+.|++++ .+++..+..+.. +++|++|++++|.+++.....+ ..+++|+.|++++|+++.. ......++
T Consensus 428 ~~~~~~L~~L~L~~-~l~~~~~~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~ 506 (594)
T 2p1m_B 428 VEHCKDLRRLSLSG-LLTDKVFEYIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGDKALLANASKLE 506 (594)
T ss_dssp HHHCTTCCEEECCS-SCCHHHHHHHHHHCTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCSCCHHHHHHTGGGGG
T ss_pred HhhCCCccEEeecC-cccHHHHHHHHHhchhccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCCCcHHHHHHHHHhCC
Confidence 34556666666655 444333344433 6667777777666654333333 4566777777777766321 11223466
Q ss_pred cceEEEeeCcccCCcchHhh-hccCcceEEeCCCC
Q 036411 422 SVKHIYLHNNAINGLIPIAL-LRSSTLLTLDLRDN 455 (487)
Q Consensus 422 ~L~~L~l~~~~~~~~~~~~~-~~~~~L~~L~l~~~ 455 (487)
+|++|++++|+++......+ ..+++|+...+..+
T Consensus 507 ~L~~L~l~~~~~~~~~~~~l~~~lp~l~i~~~~~~ 541 (594)
T 2p1m_B 507 TMRSLWMSSCSVSFGACKLLGQKMPKLNVEVIDER 541 (594)
T ss_dssp GSSEEEEESSCCBHHHHHHHHHHCTTEEEEEECSS
T ss_pred CCCEEeeeCCCCCHHHHHHHHHhCCCCEEEEecCC
Confidence 77777777776643333333 44566665555544
|
| >2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} | Back alignment and structure |
|---|
Probab=99.95 E-value=1.1e-26 Score=212.61 Aligned_cols=246 Identities=21% Similarity=0.227 Sum_probs=131.8
Q ss_pred cEEEcccCCCCCCCCCCCCcCCCCCcEEEccCCcccccCCcccccccCceEEEEccCCCCCCC--cchhhhccccCcEEe
Q 036411 206 EVLILWNNSFSGILPRLPNAKYDKLRHLDISTNNFSGKLPENLGIVFQKLIYLDVSKNSFEGN--IPYSISEMKELITLD 283 (487)
Q Consensus 206 ~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~--~~~~~~~~~~L~~L~ 283 (487)
+.+++.++.+...+. ...++++.|+++++.+. .++...+..+++|++|++++|.+... .+..+..+++|+.|+
T Consensus 10 ~~l~c~~~~l~~ip~----~~~~~l~~L~L~~n~l~-~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~ 84 (306)
T 2z66_A 10 TEIRCNSKGLTSVPT----GIPSSATRLELESNKLQ-SLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLD 84 (306)
T ss_dssp TEEECCSSCCSSCCS----CCCTTCCEEECCSSCCC-CCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEE
T ss_pred CEEEcCCCCcccCCC----CCCCCCCEEECCCCccC-ccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEE
Confidence 345555554443322 12245666666666665 44444444456666666666665422 134444556666666
Q ss_pred cccccCCCCCchhhhcCCCCCcEEECCCCccCCCCC-cCCcCCCCccEEEcCCCcccccccccccCCCcccEEEccCCcc
Q 036411 284 LSRNNFSGELPRSIFSSCLSLETLDLSNNNFYGQLF-PNFMNLTHLSSLRLNNNHFSGKMADGLLSSTLLDVLDVSNNKL 362 (487)
Q Consensus 284 l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 362 (487)
+++|.+. .++.. +..+++|++|++++|.+.+... ..+..+++|+.|++++|.+.+..+..+..+++|++|++++|.+
T Consensus 85 Ls~n~i~-~l~~~-~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l 162 (306)
T 2z66_A 85 LSFNGVI-TMSSN-FLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSF 162 (306)
T ss_dssp CCSCSEE-EEEEE-EETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEE
T ss_pred CCCCccc-cChhh-cCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCcc
Confidence 6666655 44443 4556666666666666554332 3455556666666666665544555555556666666666655
Q ss_pred CC-CchhhhcccccccEEecCCccccCcchhhhccCcCCcEEeccCCccccccc-cccCCCcceEEEeeCcccCCcchHh
Q 036411 363 SG-DIPHWIGNFSVLWLLLMSENYLQGSIPVQLGNLESLEFIDISENGLSVSMV-SLSNLSSVKHIYLHNNAINGLIPIA 440 (487)
Q Consensus 363 ~~-~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~-~~~~~~~L~~L~l~~~~~~~~~~~~ 440 (487)
.+ ..|..+..+++|++|++++|.+.+..+..+..+++|+.|++++|+++.... .+..+++|++|++++|.+++..+..
T Consensus 163 ~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~ 242 (306)
T 2z66_A 163 QENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQE 242 (306)
T ss_dssp GGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBCSSSS
T ss_pred ccccchhHHhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCccChhhccCcccCCEeECCCCCCcccCHHH
Confidence 43 345555555556666666555554444555555555555555555543222 3344555555555555555544444
Q ss_pred hhcc-CcceEEeCCCCccc
Q 036411 441 LLRS-STLLTLDLRDNKFF 458 (487)
Q Consensus 441 ~~~~-~~L~~L~l~~~~~~ 458 (487)
+..+ ++|+.|++++|+++
T Consensus 243 ~~~~~~~L~~L~L~~N~~~ 261 (306)
T 2z66_A 243 LQHFPSSLAFLNLTQNDFA 261 (306)
T ss_dssp CCCCCTTCCEEECTTCCEE
T ss_pred HHhhhccCCEEEccCCCee
Confidence 4444 25555555555553
|
| >3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.94 E-value=5.2e-26 Score=218.88 Aligned_cols=227 Identities=23% Similarity=0.226 Sum_probs=123.4
Q ss_pred CceEEEEccCCCCCCCcchhhhccccCcEEecccccCCCCCchhhhcCCCCCcEEECCCCccCCCCCcCCcCCCCccEEE
Q 036411 253 QKLIYLDVSKNSFEGNIPYSISEMKELITLDLSRNNFSGELPRSIFSSCLSLETLDLSNNNFYGQLFPNFMNLTHLSSLR 332 (487)
Q Consensus 253 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~ 332 (487)
++++.|++++|.+....+..+..+++|+.|++++|.+. .++...|.++++|++|++++|.+.+.....+..+++|++|+
T Consensus 64 ~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~-~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 142 (440)
T 3zyj_A 64 TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIR-TIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELW 142 (440)
T ss_dssp TTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCC-EECGGGGTTCSSCCEEECCSSCCSSCCTTTSCSCSSCCEEE
T ss_pred CCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCC-ccChhhccCCccCCEEECCCCcCCeeCHhHhhccccCceee
Confidence 44555555555555444444555555555555555554 44444455555555555555555544444455555555555
Q ss_pred cCCCcccccccccccCCCcccEEEccCCcc-CCCchhhhcccccccEEecCCccccCcchhhhccCcCCcEEeccCCccc
Q 036411 333 LNNNHFSGKMADGLLSSTLLDVLDVSNNKL-SGDIPHWIGNFSVLWLLLMSENYLQGSIPVQLGNLESLEFIDISENGLS 411 (487)
Q Consensus 333 l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~-~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~ 411 (487)
+++|.+.......+..+++|+.|++++|.. ....+..+..+++|++|++++|.+. ..| .+..+++|+.|++++|+++
T Consensus 143 L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~-~~~-~~~~l~~L~~L~Ls~N~l~ 220 (440)
T 3zyj_A 143 LRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLR-EIP-NLTPLIKLDELDLSGNHLS 220 (440)
T ss_dssp CCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCS-SCC-CCTTCSSCCEEECTTSCCC
T ss_pred CCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCc-ccc-ccCCCcccCEEECCCCccC
Confidence 555555544444555555555555555332 2222234555555666666655554 222 2445556666666666554
Q ss_pred cc-cccccCCCcceEEEeeCcccCCcchHhhhccCcceEEeCCCCcccccCcccccccCceeEEeccCCccC
Q 036411 412 VS-MVSLSNLSSVKHIYLHNNAINGLIPIALLRSSTLLTLDLRDNKFFGRIPHQINELSNLHFLLLRGNSLQ 482 (487)
Q Consensus 412 ~~-~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~ 482 (487)
.. +..+..+++|++|++++|.++...+.++..+++|+.|+|++|+++...+..+..+++|+.|++++||+.
T Consensus 221 ~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~ 292 (440)
T 3zyj_A 221 AIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHNPWN 292 (440)
T ss_dssp EECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCCCCCTTTTSSCTTCCEEECCSSCEE
T ss_pred ccChhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCCccChhHhccccCCCEEEcCCCCcc
Confidence 33 344445566666666666666555555556666666666666665555555566666666666666543
|
| >3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A | Back alignment and structure |
|---|
Probab=99.94 E-value=7.7e-26 Score=218.44 Aligned_cols=227 Identities=23% Similarity=0.216 Sum_probs=112.7
Q ss_pred CceEEEEccCCCCCCCcchhhhccccCcEEecccccCCCCCchhhhcCCCCCcEEECCCCccCCCCCcCCcCCCCccEEE
Q 036411 253 QKLIYLDVSKNSFEGNIPYSISEMKELITLDLSRNNFSGELPRSIFSSCLSLETLDLSNNNFYGQLFPNFMNLTHLSSLR 332 (487)
Q Consensus 253 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~ 332 (487)
+++++|++++|.+.+..+..+..+++|+.|++++|.+. .++...|.++++|++|++++|.+....+..+..+++|++|+
T Consensus 75 ~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 153 (452)
T 3zyi_A 75 SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIR-QIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELW 153 (452)
T ss_dssp TTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCC-EECTTTTTTCTTCCEEECCSSCCSBCCTTTSSSCTTCCEEE
T ss_pred CCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccC-CcChhhccCcccCCEEECCCCcCCccChhhhcccCCCCEEE
Confidence 34455555555544433444445555555555555544 34433444555555555555554444444444455555555
Q ss_pred cCCCcccccccccccCCCcccEEEccCCc-cCCCchhhhcccccccEEecCCccccCcchhhhccCcCCcEEeccCCccc
Q 036411 333 LNNNHFSGKMADGLLSSTLLDVLDVSNNK-LSGDIPHWIGNFSVLWLLLMSENYLQGSIPVQLGNLESLEFIDISENGLS 411 (487)
Q Consensus 333 l~~~~~~~~~~~~~~~~~~L~~L~l~~~~-~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~ 411 (487)
+++|.+.......+..+++|+.|++++|. +....+..+..+++|++|++++|.+.. .+ .+..+++|+.|++++|.+.
T Consensus 154 L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~-~~-~~~~l~~L~~L~Ls~N~l~ 231 (452)
T 3zyi_A 154 LRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKD-MP-NLTPLVGLEELEMSGNHFP 231 (452)
T ss_dssp CCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSS-CC-CCTTCTTCCEEECTTSCCS
T ss_pred CCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCcccc-cc-cccccccccEEECcCCcCc
Confidence 55555544444444455555555555532 221222234455555555555555542 22 2444555555555555553
Q ss_pred cc-cccccCCCcceEEEeeCcccCCcchHhhhccCcceEEeCCCCcccccCcccccccCceeEEeccCCccC
Q 036411 412 VS-MVSLSNLSSVKHIYLHNNAINGLIPIALLRSSTLLTLDLRDNKFFGRIPHQINELSNLHFLLLRGNSLQ 482 (487)
Q Consensus 412 ~~-~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~ 482 (487)
.. +..+..+++|+.|++++|.++...+.++..+++|+.|+|++|+++...+..+..+++|+.|++++||+.
T Consensus 232 ~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~ 303 (452)
T 3zyi_A 232 EIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHNPWN 303 (452)
T ss_dssp EECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTSSTTCTTCCEEECCSSCEE
T ss_pred ccCcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCCccChHHhccccCCCEEEccCCCcC
Confidence 32 333445555555555555555555555555555555555555555444445555555555555555543
|
| >2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* | Back alignment and structure |
|---|
Probab=99.94 E-value=9.3e-29 Score=248.24 Aligned_cols=425 Identities=14% Similarity=0.067 Sum_probs=289.3
Q ss_pred cccccccccEEecCCccccccc---------------cccccCCCCCcEEEccCccccCCcccccccCCCCCcEEECCCC
Q 036411 3 SFGSLKQLKILNLGFNFFIDSI---------------LPYLNTLTSLTTLNLRYNKIEGSRTKQGICNLKNLLELDLSSN 67 (487)
Q Consensus 3 ~~~~~~~L~~L~l~~~~~~~~~---------------~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~ 67 (487)
.+.++++|+.|+++++...... ......+++|++|+++++.+++.........+++|++|++++|
T Consensus 61 ~~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~ 140 (594)
T 2p1m_B 61 VIRRFPKVRSVELKGKPHFADFNLVPDGWGGYVYPWIEAMSSSYTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSC 140 (594)
T ss_dssp HHHHCTTCCEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESC
T ss_pred HHhhCCCceEEeccCCCchhhcccccccccchhhHHHHHHHHhCCCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCc
Confidence 3578899999999987532111 1223578999999999998764333222236899999999999
Q ss_pred -ccCCC-cchhccCCCCccEEeccCccccCCccc----cccCCCCCcEEeccccc--cCcchhHHHhhccccceEEEecc
Q 036411 68 -NFEGH-LPQCLNNLTHLKVLDISYNQLSGNFPS----VLTNLTSLEYLDLSFID--FQGTFLINSLANHSKLEVLVLSS 139 (487)
Q Consensus 68 -~~~~~-~~~~~~~l~~L~~L~l~~~~~~~~~~~----~~~~~~~L~~L~l~~~~--~~~~~~~~~~~~~~~L~~l~l~~ 139 (487)
.+.+. ++....++++|++|++++|.++...+. ....+++|++|+++++. +...........+++|+.|++.+
T Consensus 141 ~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~ 220 (594)
T 2p1m_B 141 EGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNR 220 (594)
T ss_dssp EEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTTCCCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCT
T ss_pred CCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhcCCcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCC
Confidence 44432 344456899999999999987654433 33477899999999886 44344445557789999999988
Q ss_pred CCCccccccccccCCCCCceeeccccc-------ccccccccccCCcccEE-eCCCCcccCCcchHhhhcCCCCcEEEcc
Q 036411 140 GNDMLQVKTENWLPTYPLKVLQLSHCH-------LNVNSSFLLHQHHLKFL-DLSHNQLVGNFPTWLLQNNTGLEVLILW 211 (487)
Q Consensus 140 ~~~~~~~~~~~~~~~~~L~~L~l~~~~-------~~~~~~~~~~~~~L~~L-~l~~~~~~~~~~~~~~~~~~~L~~L~l~ 211 (487)
+..... ....+..+++|+++++..+. +..++..+.++++|+.+ .+..... .....+...+++|++|+++
T Consensus 221 ~~~~~~-l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~l~~~~~L~~Ls~~~~~~~--~~l~~~~~~~~~L~~L~L~ 297 (594)
T 2p1m_B 221 AVPLEK-LATLLQRAPQLEELGTGGYTAEVRPDVYSGLSVALSGCKELRCLSGFWDAVP--AYLPAVYSVCSRLTTLNLS 297 (594)
T ss_dssp TSCHHH-HHHHHHHCTTCSEEECSBCCCCCCHHHHHHHHHHHHTCTTCCEEECCBTCCG--GGGGGGHHHHTTCCEEECT
T ss_pred CCcHHH-HHHHHhcCCcceEcccccccCccchhhHHHHHHHHhcCCCcccccCCcccch--hhHHHHHHhhCCCCEEEcc
Confidence 865555 33345667889999876553 23344466788999998 4443322 2222333467999999999
Q ss_pred cCCCCCCCCCCCCcCCCCCcEEEccCCcccccCCcccccccCceEEEEccC---------CCCCCCcchhh-hccccCcE
Q 036411 212 NNSFSGILPRLPNAKYDKLRHLDISTNNFSGKLPENLGIVFQKLIYLDVSK---------NSFEGNIPYSI-SEMKELIT 281 (487)
Q Consensus 212 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~---------~~~~~~~~~~~-~~~~~L~~ 281 (487)
+|.+...........+++|+.|++.+| +.+.....+...+++|++|++.+ +.+++.....+ ..+++|+.
T Consensus 298 ~~~l~~~~l~~~~~~~~~L~~L~l~~~-~~~~~l~~l~~~~~~L~~L~L~~~~~~g~~~~~~l~~~~l~~l~~~~~~L~~ 376 (594)
T 2p1m_B 298 YATVQSYDLVKLLCQCPKLQRLWVLDY-IEDAGLEVLASTCKDLRELRVFPSEPFVMEPNVALTEQGLVSVSMGCPKLES 376 (594)
T ss_dssp TCCCCHHHHHHHHTTCTTCCEEEEEGG-GHHHHHHHHHHHCTTCCEEEEECSCTTCSSCSSCCCHHHHHHHHHHCTTCCE
T ss_pred CCCCCHHHHHHHHhcCCCcCEEeCcCc-cCHHHHHHHHHhCCCCCEEEEecCcccccccCCCCCHHHHHHHHHhchhHHH
Confidence 988543221112347789999999988 44333344444578999999944 23332222222 35899999
Q ss_pred EecccccCCCCCchhhhcCCCCCcEEECC--C----CccCCCCCc-----CCcCCCCccEEEcCCCcccccccccccC-C
Q 036411 282 LDLSRNNFSGELPRSIFSSCLSLETLDLS--N----NNFYGQLFP-----NFMNLTHLSSLRLNNNHFSGKMADGLLS-S 349 (487)
Q Consensus 282 L~l~~~~~~~~~~~~~~~~~~~L~~L~l~--~----~~~~~~~~~-----~~~~~~~L~~L~l~~~~~~~~~~~~~~~-~ 349 (487)
|.+..+.+++.....+...+++|+.|++. + +.+++.... .+..+++|++|++++ .++......+.. +
T Consensus 377 L~~~~~~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~l~~~~~~L~~L~L~~-~l~~~~~~~l~~~~ 455 (594)
T 2p1m_B 377 VLYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSG-LLTDKVFEYIGTYA 455 (594)
T ss_dssp EEEEESCCCHHHHHHHHHHCTTCCEEEEEESSTTCCCTTTCCCTHHHHHHHHHHCTTCCEEECCS-SCCHHHHHHHHHHC
T ss_pred HHHhcCCcCHHHHHHHHhhCCCcceeEeecccCCCcccccCCchhhHHHHHHhhCCCccEEeecC-cccHHHHHHHHHhc
Confidence 98888888744444444568999999998 3 334321111 145688999999987 555444444444 7
Q ss_pred CcccEEEccCCccCCCchhhh-cccccccEEecCCccccCcchh-hhccCcCCcEEeccCCccccc-cccc-cCCCcceE
Q 036411 350 TLLDVLDVSNNKLSGDIPHWI-GNFSVLWLLLMSENYLQGSIPV-QLGNLESLEFIDISENGLSVS-MVSL-SNLSSVKH 425 (487)
Q Consensus 350 ~~L~~L~l~~~~~~~~~~~~~-~~~~~L~~L~l~~~~~~~~~~~-~~~~~~~L~~l~l~~~~~~~~-~~~~-~~~~~L~~ 425 (487)
++|+.|++++|.+++..+..+ ..+++|++|++++|.+++.... .+..+++|+.|++++|+++.. ...+ ..+|+|+.
T Consensus 456 ~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~lp~l~i 535 (594)
T 2p1m_B 456 KKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGDKALLANASKLETMRSLWMSSCSVSFGACKLLGQKMPKLNV 535 (594)
T ss_dssp TTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCSCCHHHHHHTGGGGGGSSEEEEESSCCBHHHHHHHHHHCTTEEE
T ss_pred hhccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCCCcHHHHHHHHHhCCCCCEEeeeCCCCCHHHHHHHHHhCCCCEE
Confidence 899999999999876555555 6799999999999998644443 345689999999999998421 1222 35788877
Q ss_pred EEeeCcc
Q 036411 426 IYLHNNA 432 (487)
Q Consensus 426 L~l~~~~ 432 (487)
..+.++.
T Consensus 536 ~~~~~~~ 542 (594)
T 2p1m_B 536 EVIDERG 542 (594)
T ss_dssp EEECSSS
T ss_pred EEecCCC
Confidence 7766554
|
| >1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* | Back alignment and structure |
|---|
Probab=99.94 E-value=1.1e-25 Score=203.55 Aligned_cols=250 Identities=18% Similarity=0.168 Sum_probs=188.8
Q ss_pred cEEEccCCcccccCCcccccccCceEEEEccCCCCCCCcchhhhccccCcEEecccccCCCCCchhhhcCCCCCcEEECC
Q 036411 231 RHLDISTNNFSGKLPENLGIVFQKLIYLDVSKNSFEGNIPYSISEMKELITLDLSRNNFSGELPRSIFSSCLSLETLDLS 310 (487)
Q Consensus 231 ~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~ 310 (487)
+.++.++..+. .+|..+ ++++++|+++++.+.+..+..+..+++|+.|++++|.+. .++...|..+++|++|+++
T Consensus 14 ~~~~c~~~~l~-~ip~~~---~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~l~ 88 (285)
T 1ozn_A 14 VTTSCPQQGLQ-AVPVGI---PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLA-RIDAAAFTGLALLEQLDLS 88 (285)
T ss_dssp CEEECCSSCCS-SCCTTC---CTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCC-EECTTTTTTCTTCCEEECC
T ss_pred eEEEcCcCCcc-cCCcCC---CCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccc-eeCHhhcCCccCCCEEeCC
Confidence 56777777666 455543 468899999998887666667888888999999988887 5655567888889999998
Q ss_pred CCc-cCCCCCcCCcCCCCccEEEcCCCcccccccccccCCCcccEEEccCCccCCCchhhhcccccccEEecCCccccCc
Q 036411 311 NNN-FYGQLFPNFMNLTHLSSLRLNNNHFSGKMADGLLSSTLLDVLDVSNNKLSGDIPHWIGNFSVLWLLLMSENYLQGS 389 (487)
Q Consensus 311 ~~~-~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~ 389 (487)
+|. +....+..+..+++|++|++++|.+.+..+..+..+++|++|++++|++.+..+..++.+++|++|++++|.++..
T Consensus 89 ~n~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~ 168 (285)
T 1ozn_A 89 DNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSV 168 (285)
T ss_dssp SCTTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEE
T ss_pred CCCCccccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCccccc
Confidence 887 6666567788888899999988888866677778888888888888888876677788888888888888888755
Q ss_pred chhhhccCcCCcEEeccCCccccc-cccccCCCcceEEEeeCcccCCcchHhhhccCcceEEeCCCCcccccCccccccc
Q 036411 390 IPVQLGNLESLEFIDISENGLSVS-MVSLSNLSSVKHIYLHNNAINGLIPIALLRSSTLLTLDLRDNKFFGRIPHQINEL 468 (487)
Q Consensus 390 ~~~~~~~~~~L~~l~l~~~~~~~~-~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l 468 (487)
.+..+..+++|+.|++++|.+... +..+..+++|+.|++++|.+++..+..+..+++|+.|++++|++.+.-+ ...-.
T Consensus 169 ~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~~~-~~~~~ 247 (285)
T 1ozn_A 169 PERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCR-ARPLW 247 (285)
T ss_dssp CTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEECSGG-GHHHH
T ss_pred CHHHhcCccccCEEECCCCcccccCHhHccCcccccEeeCCCCcCCcCCHHHcccCcccCEEeccCCCccCCCC-cHHHH
Confidence 555678888888888888888644 5566678888888888888888777778888888888888888753222 11222
Q ss_pred CceeEEeccCCccCCCCC
Q 036411 469 SNLHFLLLRGNSLQGRIP 486 (487)
Q Consensus 469 ~~L~~L~l~~~~~~~~~p 486 (487)
..++.+..+.+.+.+..|
T Consensus 248 ~~l~~~~~~~~~~~c~~p 265 (285)
T 1ozn_A 248 AWLQKFRGSSSEVPCSLP 265 (285)
T ss_dssp HHHHHCCSEECCCBEEES
T ss_pred HHHHhcccccCccccCCc
Confidence 334444555565555554
|
| >2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} | Back alignment and structure |
|---|
Probab=99.94 E-value=2e-26 Score=210.92 Aligned_cols=281 Identities=23% Similarity=0.221 Sum_probs=206.5
Q ss_pred cEEeCCCCcccCCcchHhhhcCCCCcEEEcccCCCCCCCCCCCCcCCCCCcEEEccCCcccccC--CcccccccCceEEE
Q 036411 181 KFLDLSHNQLVGNFPTWLLQNNTGLEVLILWNNSFSGILPRLPNAKYDKLRHLDISTNNFSGKL--PENLGIVFQKLIYL 258 (487)
Q Consensus 181 ~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~--~~~~~~~~~~L~~L 258 (487)
+.++.+++.++ .+|..+ .+++++|+++++.+...... .+..+++|+.|++++|.+.... +..+. .+++|++|
T Consensus 10 ~~l~c~~~~l~-~ip~~~---~~~l~~L~L~~n~l~~i~~~-~~~~l~~L~~L~L~~n~l~~~~~~~~~~~-~~~~L~~L 83 (306)
T 2z66_A 10 TEIRCNSKGLT-SVPTGI---PSSATRLELESNKLQSLPHG-VFDKLTQLTKLSLSSNGLSFKGCCSQSDF-GTTSLKYL 83 (306)
T ss_dssp TEEECCSSCCS-SCCSCC---CTTCCEEECCSSCCCCCCTT-TTTTCTTCSEEECCSSCCCEEEEEEHHHH-SCSCCCEE
T ss_pred CEEEcCCCCcc-cCCCCC---CCCCCEEECCCCccCccCHh-HhhccccCCEEECCCCccCcccCcccccc-cccccCEE
Confidence 56777777766 555533 36888999988887754433 4577888999999888776321 22222 35789999
Q ss_pred EccCCCCCCCcchhhhccccCcEEecccccCCCCCch-hhhcCCCCCcEEECCCCccCCCCCcCCcCCCCccEEEcCCCc
Q 036411 259 DVSKNSFEGNIPYSISEMKELITLDLSRNNFSGELPR-SIFSSCLSLETLDLSNNNFYGQLFPNFMNLTHLSSLRLNNNH 337 (487)
Q Consensus 259 ~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 337 (487)
++++|.+. ..+..+..+++|+.|++++|.+. .++. ..|..+++|++|++++|.+.+..+..+..+++|++|++++|.
T Consensus 84 ~Ls~n~i~-~l~~~~~~l~~L~~L~l~~n~l~-~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~ 161 (306)
T 2z66_A 84 DLSFNGVI-TMSSNFLGLEQLEHLDFQHSNLK-QMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNS 161 (306)
T ss_dssp ECCSCSEE-EEEEEEETCTTCCEEECTTSEEE-SSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCE
T ss_pred ECCCCccc-cChhhcCCCCCCCEEECCCCccc-ccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCc
Confidence 99998887 45556778889999999998887 4543 557888899999999988877777778888899999999988
Q ss_pred ccc-cccccccCCCcccEEEccCCccCCCchhhhcccccccEEecCCccccCcchhhhccCcCCcEEeccCCccccc-cc
Q 036411 338 FSG-KMADGLLSSTLLDVLDVSNNKLSGDIPHWIGNFSVLWLLLMSENYLQGSIPVQLGNLESLEFIDISENGLSVS-MV 415 (487)
Q Consensus 338 ~~~-~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~-~~ 415 (487)
+.+ ..+..+..+++|++|++++|++++..+..+..+++|++|++++|.+.+..+..+..+++|+.|++++|++... +.
T Consensus 162 l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~ 241 (306)
T 2z66_A 162 FQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQ 241 (306)
T ss_dssp EGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBCSSS
T ss_pred cccccchhHHhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCccChhhccCcccCCEeECCCCCCcccCHH
Confidence 875 4677788888999999999988877788888889999999999988866666788888999999999988543 34
Q ss_pred cccCC-CcceEEEeeCcccCCcch-Hh-hhccCcceEEeCCCCcccccCcccccccC
Q 036411 416 SLSNL-SSVKHIYLHNNAINGLIP-IA-LLRSSTLLTLDLRDNKFFGRIPHQINELS 469 (487)
Q Consensus 416 ~~~~~-~~L~~L~l~~~~~~~~~~-~~-~~~~~~L~~L~l~~~~~~~~~~~~l~~l~ 469 (487)
.+..+ ++|++|++++|.+..... .+ ..-+...+.+....+.+.+..|..+++.+
T Consensus 242 ~~~~~~~~L~~L~L~~N~~~~~c~~~~~~~~l~~~~~~~~~~~~~~C~~p~~~~g~~ 298 (306)
T 2z66_A 242 ELQHFPSSLAFLNLTQNDFACTCEHQSFLQWIKDQRQLLVEVERMECATPSDKQGMP 298 (306)
T ss_dssp SCCCCCTTCCEEECTTCCEECSGGGHHHHHHHHHTGGGBSCGGGCBEEESGGGTTCB
T ss_pred HHHhhhccCCEEEccCCCeecccChHHHHHHHHhhhhhhccccccccCCchhhCCce
Confidence 45566 489999999988875422 11 11123344455566667677777766554
|
| >1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* | Back alignment and structure |
|---|
Probab=99.94 E-value=7.1e-26 Score=204.91 Aligned_cols=268 Identities=18% Similarity=0.115 Sum_probs=217.0
Q ss_pred cEEEcccCCCCCCCCCCCCcCCCCCcEEEccCCcccccCCcccccccCceEEEEccCCCCCCCcchhhhccccCcEEecc
Q 036411 206 EVLILWNNSFSGILPRLPNAKYDKLRHLDISTNNFSGKLPENLGIVFQKLIYLDVSKNSFEGNIPYSISEMKELITLDLS 285 (487)
Q Consensus 206 ~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~ 285 (487)
+.+++.+..+..... ...++++.|+++++.+.+ ++...+..+++|++|++++|.+.+..+..+..+++|+.|+++
T Consensus 14 ~~~~c~~~~l~~ip~----~~~~~l~~L~l~~n~i~~-~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~ 88 (285)
T 1ozn_A 14 VTTSCPQQGLQAVPV----GIPAASQRIFLHGNRISH-VPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLS 88 (285)
T ss_dssp CEEECCSSCCSSCCT----TCCTTCSEEECTTSCCCE-ECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECC
T ss_pred eEEEcCcCCcccCCc----CCCCCceEEEeeCCcCCc-cCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCC
Confidence 567777776665432 335789999999999884 443333456899999999999987667788999999999999
Q ss_pred ccc-CCCCCchhhhcCCCCCcEEECCCCccCCCCCcCCcCCCCccEEEcCCCcccccccccccCCCcccEEEccCCccCC
Q 036411 286 RNN-FSGELPRSIFSSCLSLETLDLSNNNFYGQLFPNFMNLTHLSSLRLNNNHFSGKMADGLLSSTLLDVLDVSNNKLSG 364 (487)
Q Consensus 286 ~~~-~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~ 364 (487)
+|. +. .++...|..+++|++|++++|.+.+..+..+..+++|++|++++|.+.+.....+..+++|++|++++|++++
T Consensus 89 ~n~~l~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~ 167 (285)
T 1ozn_A 89 DNAQLR-SVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISS 167 (285)
T ss_dssp SCTTCC-CCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCE
T ss_pred CCCCcc-ccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCcccc
Confidence 997 65 7766678899999999999999988777888899999999999999987777778889999999999999986
Q ss_pred CchhhhcccccccEEecCCccccCcchhhhccCcCCcEEeccCCccccccc-cccCCCcceEEEeeCcccCCcchHhhhc
Q 036411 365 DIPHWIGNFSVLWLLLMSENYLQGSIPVQLGNLESLEFIDISENGLSVSMV-SLSNLSSVKHIYLHNNAINGLIPIALLR 443 (487)
Q Consensus 365 ~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~-~~~~~~~L~~L~l~~~~~~~~~~~~~~~ 443 (487)
..+..+..+++|++|++++|.+.+..+..+..+++|+.|++++|.+..... .+..+++|++|++++|.+....+.. ..
T Consensus 168 ~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~~~~~-~~ 246 (285)
T 1ozn_A 168 VPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCRAR-PL 246 (285)
T ss_dssp ECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEECSGGGH-HH
T ss_pred cCHHHhcCccccCEEECCCCcccccCHhHccCcccccEeeCCCCcCCcCCHHHcccCcccCEEeccCCCccCCCCcH-HH
Confidence 666679999999999999999987778899999999999999999975554 4678999999999999988543321 11
Q ss_pred cCcceEEeCCCCcccccCcccccc--cCceeEEeccCCc
Q 036411 444 SSTLLTLDLRDNKFFGRIPHQINE--LSNLHFLLLRGNS 480 (487)
Q Consensus 444 ~~~L~~L~l~~~~~~~~~~~~l~~--l~~L~~L~l~~~~ 480 (487)
...++.+..+.+.+.+..|+.+.. +..++..++.+|+
T Consensus 247 ~~~l~~~~~~~~~~~c~~p~~l~g~~l~~l~~~~l~~C~ 285 (285)
T 1ozn_A 247 WAWLQKFRGSSSEVPCSLPQRLAGRDLKRLAANDLQGCA 285 (285)
T ss_dssp HHHHHHCCSEECCCBEEESGGGTTCBGGGSCGGGSCCC-
T ss_pred HHHHHhcccccCccccCCchHhCCcChhhcCHHHhccCC
Confidence 234556667778888888887754 5677777777774
|
| >2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.93 E-value=1.7e-25 Score=208.97 Aligned_cols=273 Identities=18% Similarity=0.152 Sum_probs=187.8
Q ss_pred cEEeCCCCcccCCcchHhhhcCCCCcEEEcccCCCCCCCCCCCCcCCCCCcEEEccCCcccccCCcccccccCceEEEEc
Q 036411 181 KFLDLSHNQLVGNFPTWLLQNNTGLEVLILWNNSFSGILPRLPNAKYDKLRHLDISTNNFSGKLPENLGIVFQKLIYLDV 260 (487)
Q Consensus 181 ~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l 260 (487)
...+.+++.++ .+|..+. ++|++|+++++.+...... .+..+++|+.|++++|.+.+..+..+ ..+++|++|++
T Consensus 34 ~~c~~~~~~l~-~iP~~~~---~~L~~L~l~~n~i~~~~~~-~~~~l~~L~~L~L~~n~l~~~~~~~~-~~l~~L~~L~L 107 (353)
T 2z80_A 34 GICKGSSGSLN-SIPSGLT---EAVKSLDLSNNRITYISNS-DLQRCVNLQALVLTSNGINTIEEDSF-SSLGSLEHLDL 107 (353)
T ss_dssp SEEECCSTTCS-SCCTTCC---TTCCEEECTTSCCCEECTT-TTTTCTTCCEEECTTSCCCEECTTTT-TTCTTCCEEEC
T ss_pred eEeeCCCCCcc-ccccccc---ccCcEEECCCCcCcccCHH-HhccCCCCCEEECCCCccCccCHhhc-CCCCCCCEEEC
Confidence 33455555554 4444322 4666666666666544332 34667777777777777764333333 33577888888
Q ss_pred cCCCCCCCcchhhhccccCcEEecccccCCCCCch-hhhcCCCCCcEEECCCCc-cCCCCCcCCcCCCCccEEEcCCCcc
Q 036411 261 SKNSFEGNIPYSISEMKELITLDLSRNNFSGELPR-SIFSSCLSLETLDLSNNN-FYGQLFPNFMNLTHLSSLRLNNNHF 338 (487)
Q Consensus 261 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~-~~~~~~~~L~~L~l~~~~-~~~~~~~~~~~~~~L~~L~l~~~~~ 338 (487)
++|.+++..+..+..+++|+.|++++|.+. .++. ..|..+++|++|++++|. +.+..+..+..+++|++|++++|.+
T Consensus 108 s~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l 186 (353)
T 2z80_A 108 SYNYLSNLSSSWFKPLSSLTFLNLLGNPYK-TLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDL 186 (353)
T ss_dssp CSSCCSSCCHHHHTTCTTCSEEECTTCCCS-SSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTC
T ss_pred CCCcCCcCCHhHhCCCccCCEEECCCCCCc-ccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCc
Confidence 888877555555777888888888888877 6666 567778888888888874 5555556677788888888888888
Q ss_pred cccccccccCCCcccEEEccCCccCCCchhhhcccccccEEecCCccccCcchhhh---ccCcCCcEEeccCCccc----
Q 036411 339 SGKMADGLLSSTLLDVLDVSNNKLSGDIPHWIGNFSVLWLLLMSENYLQGSIPVQL---GNLESLEFIDISENGLS---- 411 (487)
Q Consensus 339 ~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~---~~~~~L~~l~l~~~~~~---- 411 (487)
.+..+..+..+++|++|++++|++.......+..+++|++|++++|.+.+..+..+ ...+.++.++++++.+.
T Consensus 187 ~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~~~~l~~l~L~~~~l~~~~l 266 (353)
T 2z80_A 187 QSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESL 266 (353)
T ss_dssp CEECTTTTTTCSEEEEEEEECSCSTTHHHHHHHHTTTEEEEEEESCBCTTCCCC------CCCCCCEEEEESCBCCHHHH
T ss_pred CccCHHHHhccccCCeecCCCCccccchhhhhhhcccccEEECCCCccccccccccccccccchhhccccccccccCcch
Confidence 76667777888888888888888764444445567888888888888775433332 23566777777777653
Q ss_pred -cccccccCCCcceEEEeeCcccCCcchHhhhccCcceEEeCCCCccccc
Q 036411 412 -VSMVSLSNLSSVKHIYLHNNAINGLIPIALLRSSTLLTLDLRDNKFFGR 460 (487)
Q Consensus 412 -~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~ 460 (487)
..+..+..+++|++|++++|+++...+..+..+++|+.|++++|++.+.
T Consensus 267 ~~l~~~l~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~~~~~ 316 (353)
T 2z80_A 267 FQVMKLLNQISGLLELEFSRNQLKSVPDGIFDRLTSLQKIWLHTNPWDCS 316 (353)
T ss_dssp HHHHHHHHTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCBCCC
T ss_pred hhhHHHHhcccCCCEEECCCCCCCccCHHHHhcCCCCCEEEeeCCCccCc
Confidence 2344566788888888888888876555567888888888888887644
|
| >4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} | Back alignment and structure |
|---|
Probab=99.93 E-value=2.2e-25 Score=205.16 Aligned_cols=233 Identities=18% Similarity=0.225 Sum_probs=157.6
Q ss_pred CCCcEEEccCCcccccCCcccccccCceEEEEccCCCCCCCcchhhhccccCcEEecccccCCCCCchhhhcCCCCCcEE
Q 036411 228 DKLRHLDISTNNFSGKLPENLGIVFQKLIYLDVSKNSFEGNIPYSISEMKELITLDLSRNNFSGELPRSIFSSCLSLETL 307 (487)
Q Consensus 228 ~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L 307 (487)
++++.|+++++.+. .++..++. +++|++|++++|.+. .++..+..+++|+.|++++|.+. .+|.. +..+++|++|
T Consensus 81 ~~l~~L~L~~n~l~-~lp~~l~~-l~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~l~-~lp~~-l~~l~~L~~L 155 (328)
T 4fcg_A 81 PGRVALELRSVPLP-QFPDQAFR-LSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLR-ALPAS-IASLNRLREL 155 (328)
T ss_dssp TTCCEEEEESSCCS-SCCSCGGG-GTTCSEEEEESSCCC-CCCSCGGGGTTCSEEEEESCCCC-CCCGG-GGGCTTCCEE
T ss_pred cceeEEEccCCCch-hcChhhhh-CCCCCEEECCCCCcc-chhHHHhccCCCCEEECCCCccc-cCcHH-HhcCcCCCEE
Confidence 44555566555555 44444443 455555555555555 44445555555555555555555 45443 3455555555
Q ss_pred ECCCCccCCCCCcCCcCCCCccEEEcCCCcccccccccccCCCcccEEEccCCccCCCchhhhcccccccEEecCCcccc
Q 036411 308 DLSNNNFYGQLFPNFMNLTHLSSLRLNNNHFSGKMADGLLSSTLLDVLDVSNNKLSGDIPHWIGNFSVLWLLLMSENYLQ 387 (487)
Q Consensus 308 ~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 387 (487)
++++|...+..+..+.. . .....+..+++|+.|++++|+++ .+|..++.+++|++|++++|.+.
T Consensus 156 ~L~~n~~~~~~p~~~~~------~---------~~~~~~~~l~~L~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~N~l~ 219 (328)
T 4fcg_A 156 SIRACPELTELPEPLAS------T---------DASGEHQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLS 219 (328)
T ss_dssp EEEEETTCCCCCSCSEE------E---------C-CCCEEESTTCCEEEEEEECCC-CCCGGGGGCTTCCEEEEESSCCC
T ss_pred ECCCCCCccccChhHhh------c---------cchhhhccCCCCCEEECcCCCcC-cchHhhcCCCCCCEEEccCCCCC
Confidence 55555444333332221 0 01112345778888888888877 66777888888888888888887
Q ss_pred CcchhhhccCcCCcEEeccCCccc-cccccccCCCcceEEEeeCcccCCcchHhhhccCcceEEeCCCCcccccCccccc
Q 036411 388 GSIPVQLGNLESLEFIDISENGLS-VSMVSLSNLSSVKHIYLHNNAINGLIPIALLRSSTLLTLDLRDNKFFGRIPHQIN 466 (487)
Q Consensus 388 ~~~~~~~~~~~~L~~l~l~~~~~~-~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~ 466 (487)
..+..+..+++|+.|++++|.+. ..+..+..+++|++|++++|++.+..|..+..+++|+.|++++|++.+.+|..+.
T Consensus 220 -~l~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~ 298 (328)
T 4fcg_A 220 -ALGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIA 298 (328)
T ss_dssp -CCCGGGGGCTTCCEEECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGGGG
T ss_pred -cCchhhccCCCCCEEECcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccHHHh
Confidence 45556788888888888887764 3445566888899999999888888888888899999999999998889999999
Q ss_pred ccCceeEEeccCCccC
Q 036411 467 ELSNLHFLLLRGNSLQ 482 (487)
Q Consensus 467 ~l~~L~~L~l~~~~~~ 482 (487)
++++|+.+++..+.+.
T Consensus 299 ~L~~L~~l~l~~~~~~ 314 (328)
T 4fcg_A 299 QLPANCIILVPPHLQA 314 (328)
T ss_dssp GSCTTCEEECCGGGSC
T ss_pred hccCceEEeCCHHHHH
Confidence 9999999988876543
|
| >4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} | Back alignment and structure |
|---|
Probab=99.93 E-value=1.4e-25 Score=206.46 Aligned_cols=206 Identities=19% Similarity=0.252 Sum_probs=153.4
Q ss_pred ccCcEEecccccCCCCCchhhhcCCCCCcEEECCCCccCCCCCcCCcCCCCccEEEcCCCcccccccccccCCCcccEEE
Q 036411 277 KELITLDLSRNNFSGELPRSIFSSCLSLETLDLSNNNFYGQLFPNFMNLTHLSSLRLNNNHFSGKMADGLLSSTLLDVLD 356 (487)
Q Consensus 277 ~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~ 356 (487)
++++.|+++++.+. .+|..+ ..+++|++|++++|.+. .++..+..+++|++|++++|.+. ..+..+..+++|+.|+
T Consensus 81 ~~l~~L~L~~n~l~-~lp~~l-~~l~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L~ 156 (328)
T 4fcg_A 81 PGRVALELRSVPLP-QFPDQA-FRLSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLRELS 156 (328)
T ss_dssp TTCCEEEEESSCCS-SCCSCG-GGGTTCSEEEEESSCCC-CCCSCGGGGTTCSEEEEESCCCC-CCCGGGGGCTTCCEEE
T ss_pred cceeEEEccCCCch-hcChhh-hhCCCCCEEECCCCCcc-chhHHHhccCCCCEEECCCCccc-cCcHHHhcCcCCCEEE
Confidence 34445555554444 444433 22445555555555444 33344444555555555555554 3344455555555555
Q ss_pred ccCCccCCCchhh---------hcccccccEEecCCccccCcchhhhccCcCCcEEeccCCccccccccccCCCcceEEE
Q 036411 357 VSNNKLSGDIPHW---------IGNFSVLWLLLMSENYLQGSIPVQLGNLESLEFIDISENGLSVSMVSLSNLSSVKHIY 427 (487)
Q Consensus 357 l~~~~~~~~~~~~---------~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~L~~L~ 427 (487)
+++|...+.+|.. +..+++|++|++++|.++ ..|..+..+++|+.|++++|++...+..+..+++|++|+
T Consensus 157 L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~N~l~~l~~~l~~l~~L~~L~ 235 (328)
T 4fcg_A 157 IRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLSALGPAIHHLPKLEELD 235 (328)
T ss_dssp EEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCC-CCCGGGGGCTTCCEEEEESSCCCCCCGGGGGCTTCCEEE
T ss_pred CCCCCCccccChhHhhccchhhhccCCCCCEEECcCCCcC-cchHhhcCCCCCCEEEccCCCCCcCchhhccCCCCCEEE
Confidence 5555544444444 445999999999999998 788889999999999999999988888888999999999
Q ss_pred eeCcccCCcchHhhhccCcceEEeCCCCcccccCcccccccCceeEEeccCCccCCCCCC
Q 036411 428 LHNNAINGLIPIALLRSSTLLTLDLRDNKFFGRIPHQINELSNLHFLLLRGNSLQGRIPN 487 (487)
Q Consensus 428 l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~p~ 487 (487)
+++|++.+..+..+..+++|+.|++++|.+.+.+|..+..+++|+.|++++|++.+.+|+
T Consensus 236 Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~ 295 (328)
T 4fcg_A 236 LRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPS 295 (328)
T ss_dssp CTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCG
T ss_pred CcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccH
Confidence 999999999999999999999999999999999999999999999999999999999995
|
| >3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.92 E-value=5.4e-24 Score=204.79 Aligned_cols=246 Identities=23% Similarity=0.211 Sum_probs=114.6
Q ss_pred ccEEeCCCCcccCCcchHhhhcCCCCcEEEcccCCCCCCCCCCCCcCCCCCcEEEccCCcccccCCcccccccCceEEEE
Q 036411 180 LKFLDLSHNQLVGNFPTWLLQNNTGLEVLILWNNSFSGILPRLPNAKYDKLRHLDISTNNFSGKLPENLGIVFQKLIYLD 259 (487)
Q Consensus 180 L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~ 259 (487)
...++..+..+. .+|..+ .+.++.|++++|.+....+. .+..+++|+.|++++|.+.. ++...+..+++|++|+
T Consensus 45 ~~~v~c~~~~l~-~iP~~~---~~~l~~L~L~~n~i~~~~~~-~~~~l~~L~~L~Ls~n~i~~-i~~~~~~~l~~L~~L~ 118 (440)
T 3zyj_A 45 FSKVICVRKNLR-EVPDGI---STNTRLLNLHENQIQIIKVN-SFKHLRHLEILQLSRNHIRT-IEIGAFNGLANLNTLE 118 (440)
T ss_dssp SCEEECCSCCCS-SCCSCC---CTTCSEEECCSCCCCEECTT-TTSSCSSCCEEECCSSCCCE-ECGGGGTTCSSCCEEE
T ss_pred CCEEEeCCCCcC-cCCCCC---CCCCcEEEccCCcCCeeCHH-HhhCCCCCCEEECCCCcCCc-cChhhccCCccCCEEE
Confidence 344555555444 444322 14455555555554433322 23445555555555555442 2222222334555555
Q ss_pred ccCCCCCCCcchhhhccccCcEEecccccCCCCCchhhhcCCCCCcEEECCCCc-cCCCCCcCCcCCCCccEEEcCCCcc
Q 036411 260 VSKNSFEGNIPYSISEMKELITLDLSRNNFSGELPRSIFSSCLSLETLDLSNNN-FYGQLFPNFMNLTHLSSLRLNNNHF 338 (487)
Q Consensus 260 l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~-~~~~~~~~~~~~~~L~~L~l~~~~~ 338 (487)
+++|.++...+..+..+++|+.|++++|.+. .++...|..+++|+.|++++|. +.......+..+++|+.|++++|.+
T Consensus 119 L~~n~l~~~~~~~~~~l~~L~~L~L~~N~i~-~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l 197 (440)
T 3zyj_A 119 LFDNRLTTIPNGAFVYLSKLKELWLRNNPIE-SIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNL 197 (440)
T ss_dssp CCSSCCSSCCTTTSCSCSSCCEEECCSCCCC-EECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCC
T ss_pred CCCCcCCeeCHhHhhccccCceeeCCCCccc-ccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcC
Confidence 5555554333334455555555555555554 4444444555555555555532 2222222344455555555555554
Q ss_pred cccccccccCCCcccEEEccCCccCCCchhhhcccccccEEecCCccccCcchhhhccCcCCcEEeccCCcccccccc-c
Q 036411 339 SGKMADGLLSSTLLDVLDVSNNKLSGDIPHWIGNFSVLWLLLMSENYLQGSIPVQLGNLESLEFIDISENGLSVSMVS-L 417 (487)
Q Consensus 339 ~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~-~ 417 (487)
.. .+ .+..+++|++|++++|++++..+..+..+++|++|++++|.+....+..|..+++|+.|++++|+++..... +
T Consensus 198 ~~-~~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~ 275 (440)
T 3zyj_A 198 RE-IP-NLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLF 275 (440)
T ss_dssp SS-CC-CCTTCSSCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCCCCCTTTT
T ss_pred cc-cc-ccCCCcccCEEECCCCccCccChhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCCccChhHh
Confidence 42 11 234444555555555555444444455555555555555555444444444455555555555544322222 2
Q ss_pred cCCCcceEEEeeCcccC
Q 036411 418 SNLSSVKHIYLHNNAIN 434 (487)
Q Consensus 418 ~~~~~L~~L~l~~~~~~ 434 (487)
..+++|+.|++++|.+.
T Consensus 276 ~~l~~L~~L~L~~Np~~ 292 (440)
T 3zyj_A 276 TPLHHLERIHLHHNPWN 292 (440)
T ss_dssp SSCTTCCEEECCSSCEE
T ss_pred ccccCCCEEEcCCCCcc
Confidence 34445555555554443
|
| >3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A | Back alignment and structure |
|---|
Probab=99.92 E-value=5.7e-24 Score=205.38 Aligned_cols=245 Identities=20% Similarity=0.136 Sum_probs=115.0
Q ss_pred cEEeCCCCcccCCcchHhhhcCCCCcEEEcccCCCCCCCCCCCCcCCCCCcEEEccCCcccccCCcccccccCceEEEEc
Q 036411 181 KFLDLSHNQLVGNFPTWLLQNNTGLEVLILWNNSFSGILPRLPNAKYDKLRHLDISTNNFSGKLPENLGIVFQKLIYLDV 260 (487)
Q Consensus 181 ~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l 260 (487)
..++.++..+. .+|..+ .++++.|++++|.+....+. .+..+++|+.|++++|.+.+..+.. +..+++|++|++
T Consensus 57 ~~v~c~~~~l~-~iP~~~---~~~l~~L~L~~n~i~~~~~~-~~~~l~~L~~L~Ls~n~i~~~~~~~-~~~l~~L~~L~L 130 (452)
T 3zyi_A 57 SKVVCTRRGLS-EVPQGI---PSNTRYLNLMENNIQMIQAD-TFRHLHHLEVLQLGRNSIRQIEVGA-FNGLASLNTLEL 130 (452)
T ss_dssp CEEECCSSCCS-SCCSCC---CTTCSEEECCSSCCCEECTT-TTTTCTTCCEEECCSSCCCEECTTT-TTTCTTCCEEEC
T ss_pred cEEEECCCCcC-ccCCCC---CCCccEEECcCCcCceECHH-HcCCCCCCCEEECCCCccCCcChhh-ccCcccCCEEEC
Confidence 44555555444 344322 14555555555555433322 2344555555555555554222222 222345555555
Q ss_pred cCCCCCCCcchhhhccccCcEEecccccCCCCCchhhhcCCCCCcEEECCCCc-cCCCCCcCCcCCCCccEEEcCCCccc
Q 036411 261 SKNSFEGNIPYSISEMKELITLDLSRNNFSGELPRSIFSSCLSLETLDLSNNN-FYGQLFPNFMNLTHLSSLRLNNNHFS 339 (487)
Q Consensus 261 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~-~~~~~~~~~~~~~~L~~L~l~~~~~~ 339 (487)
++|.++...+..+..+++|+.|++++|.+. .++...|..+++|+.|++++|. +.......+..+++|+.|++++|.+.
T Consensus 131 ~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~-~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~ 209 (452)
T 3zyi_A 131 FDNWLTVIPSGAFEYLSKLRELWLRNNPIE-SIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIK 209 (452)
T ss_dssp CSSCCSBCCTTTSSSCTTCCEEECCSCCCC-EECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCS
T ss_pred CCCcCCccChhhhcccCCCCEEECCCCCcc-eeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCccc
Confidence 555554333344445555555555555554 4444445555555555555532 22222223444555555555555544
Q ss_pred ccccccccCCCcccEEEccCCccCCCchhhhcccccccEEecCCccccCcchhhhccCcCCcEEeccCCccccccc-ccc
Q 036411 340 GKMADGLLSSTLLDVLDVSNNKLSGDIPHWIGNFSVLWLLLMSENYLQGSIPVQLGNLESLEFIDISENGLSVSMV-SLS 418 (487)
Q Consensus 340 ~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~-~~~ 418 (487)
+. ..+..+++|++|++++|++++..+..+..+++|++|++++|.+....+..|..+++|+.|++++|+++.... .+.
T Consensus 210 ~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~ 287 (452)
T 3zyi_A 210 DM--PNLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFT 287 (452)
T ss_dssp SC--CCCTTCTTCCEEECTTSCCSEECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTSST
T ss_pred cc--ccccccccccEEECcCCcCcccCcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCCccChHHhc
Confidence 22 123444455555555555544444455555555555555555544444444455555555555555432222 223
Q ss_pred CCCcceEEEeeCcccC
Q 036411 419 NLSSVKHIYLHNNAIN 434 (487)
Q Consensus 419 ~~~~L~~L~l~~~~~~ 434 (487)
.+++|+.|++.+|.+.
T Consensus 288 ~l~~L~~L~L~~Np~~ 303 (452)
T 3zyi_A 288 PLRYLVELHLHHNPWN 303 (452)
T ss_dssp TCTTCCEEECCSSCEE
T ss_pred cccCCCEEEccCCCcC
Confidence 4455555555555443
|
| >3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} | Back alignment and structure |
|---|
Probab=99.92 E-value=6.6e-25 Score=201.43 Aligned_cols=218 Identities=22% Similarity=0.197 Sum_probs=131.5
Q ss_pred ccCceEEEEccCCCCCCCcchhhhccccCcEEecccccCCCCCchhhhcCCCCCcEEECCCCccCCCCCcCCcCCCCccE
Q 036411 251 VFQKLIYLDVSKNSFEGNIPYSISEMKELITLDLSRNNFSGELPRSIFSSCLSLETLDLSNNNFYGQLFPNFMNLTHLSS 330 (487)
Q Consensus 251 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~ 330 (487)
.+++|++|++++|.+.+..+..+..+++|+.|++++|.+. ..+. |..+++|++|++++|.+.+.. ..++|+.
T Consensus 32 ~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~-~~~~--~~~l~~L~~L~Ls~n~l~~l~-----~~~~L~~ 103 (317)
T 3o53_A 32 SAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLY-ETLD--LESLSTLRTLDLNNNYVQELL-----VGPSIET 103 (317)
T ss_dssp TGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCE-EEEE--ETTCTTCCEEECCSSEEEEEE-----ECTTCCE
T ss_pred cCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCC-cchh--hhhcCCCCEEECcCCcccccc-----CCCCcCE
Confidence 3456666666666666555556666666666666666665 2332 456666666666666654321 2366666
Q ss_pred EEcCCCcccccccccccCCCcccEEEccCCccCCCchhhhcccccccEEecCCccccCcchhhh-ccCcCCcEEeccCCc
Q 036411 331 LRLNNNHFSGKMADGLLSSTLLDVLDVSNNKLSGDIPHWIGNFSVLWLLLMSENYLQGSIPVQL-GNLESLEFIDISENG 409 (487)
Q Consensus 331 L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~-~~~~~L~~l~l~~~~ 409 (487)
|++++|.+.+..... +++|++|++++|++++..+..+..+++|++|++++|.+.+..+..+ ..+++|+.|++++|.
T Consensus 104 L~l~~n~l~~~~~~~---~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~ 180 (317)
T 3o53_A 104 LHAANNNISRVSCSR---GQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNF 180 (317)
T ss_dssp EECCSSCCSEEEECC---CSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSC
T ss_pred EECCCCccCCcCccc---cCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCCc
Confidence 666666665433322 4556666666666665555566666666666666666665444444 356666666666666
Q ss_pred cccccccccCCCcceEEEeeCcccCCcchHhhhccCcceEEeCCCCcccccCcccccccCceeEEeccCCccC
Q 036411 410 LSVSMVSLSNLSSVKHIYLHNNAINGLIPIALLRSSTLLTLDLRDNKFFGRIPHQINELSNLHFLLLRGNSLQ 482 (487)
Q Consensus 410 ~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~ 482 (487)
++.. .....+++|++|++++|.+++..+ .+..+++|+.|++++|.++ .+|..+..+++|+.|++++|++.
T Consensus 181 l~~~-~~~~~l~~L~~L~Ls~N~l~~l~~-~~~~l~~L~~L~L~~N~l~-~l~~~~~~l~~L~~L~l~~N~~~ 250 (317)
T 3o53_A 181 IYDV-KGQVVFAKLKTLDLSSNKLAFMGP-EFQSAAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFH 250 (317)
T ss_dssp CCEE-ECCCCCTTCCEEECCSSCCCEECG-GGGGGTTCSEEECTTSCCC-EECTTCCCCTTCCEEECTTCCCB
T ss_pred Cccc-ccccccccCCEEECCCCcCCcchh-hhcccCcccEEECcCCccc-chhhHhhcCCCCCEEEccCCCcc
Confidence 6543 222346666666666666665433 3556666666666666665 34555666666666666666665
|
| >1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.92 E-value=3.9e-26 Score=209.13 Aligned_cols=245 Identities=20% Similarity=0.233 Sum_probs=174.1
Q ss_pred CCCcEEEccCCcccccCCcccccccCceEEEEccCCCCCC-Ccchhhh-------ccccCcEEecccccCCCCCchhhh-
Q 036411 228 DKLRHLDISTNNFSGKLPENLGIVFQKLIYLDVSKNSFEG-NIPYSIS-------EMKELITLDLSRNNFSGELPRSIF- 298 (487)
Q Consensus 228 ~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~-~~~~~~~-------~~~~L~~L~l~~~~~~~~~~~~~~- 298 (487)
++|+.+++.++.+ .+|..+. ..++.|+++++.+.. ..+.... .+++|+.|++++|.+.+.+|..+|
T Consensus 43 ~~L~~l~l~~n~l--~~p~~~~---~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~ 117 (312)
T 1wwl_A 43 RSLEYLLKRVDTE--ADLGQFT---DIIKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLE 117 (312)
T ss_dssp EECTTHHHHCCTT--CCCHHHH---HHHHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCCSSS
T ss_pred CCceeEeeccccc--ccHHHHH---HHHhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHHHHH
Confidence 4455555665555 3444333 236666666666532 2222222 577788888888887766666544
Q ss_pred cCCCCCcEEECCCCccCCCCCcCCcCC-----CCccEEEcCCCcccccccccccCCCcccEEEccCCccCCC--chhhh-
Q 036411 299 SSCLSLETLDLSNNNFYGQLFPNFMNL-----THLSSLRLNNNHFSGKMADGLLSSTLLDVLDVSNNKLSGD--IPHWI- 370 (487)
Q Consensus 299 ~~~~~L~~L~l~~~~~~~~~~~~~~~~-----~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~--~~~~~- 370 (487)
..+++|++|++++|.+.+. +..+..+ ++|++|++++|.+.+..+..+..+++|++|++++|++.+. .+..+
T Consensus 118 ~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~ 196 (312)
T 1wwl_A 118 ATGPDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALC 196 (312)
T ss_dssp CCSCCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHHHSC
T ss_pred hcCCCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHHHHHHH
Confidence 6777888888888877665 4545444 7888888888888766667777888888888888876543 23333
Q ss_pred -cccccccEEecCCccccCc---chhhhccCcCCcEEeccCCcccccc--ccccCCCcceEEEeeCcccCCcchHhhhcc
Q 036411 371 -GNFSVLWLLLMSENYLQGS---IPVQLGNLESLEFIDISENGLSVSM--VSLSNLSSVKHIYLHNNAINGLIPIALLRS 444 (487)
Q Consensus 371 -~~~~~L~~L~l~~~~~~~~---~~~~~~~~~~L~~l~l~~~~~~~~~--~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~ 444 (487)
..+++|++|++++|.+... ....+..+++|+.|++++|.+.... ..+..+++|++|++++|.++.. |..+.
T Consensus 197 ~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~~i-p~~~~-- 273 (312)
T 1wwl_A 197 PLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLKQV-PKGLP-- 273 (312)
T ss_dssp TTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSCCSSC-CSSCC--
T ss_pred hccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhcCCCCEEECCCCccChh-hhhcc--
Confidence 7788888888888887731 1233457789999999999886544 4455678999999999999854 54444
Q ss_pred CcceEEeCCCCcccccCcccccccCceeEEeccCCccCC
Q 036411 445 STLLTLDLRDNKFFGRIPHQINELSNLHFLLLRGNSLQG 483 (487)
Q Consensus 445 ~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~ 483 (487)
++|+.|++++|++++. |. +..+++|++|++++|++++
T Consensus 274 ~~L~~L~Ls~N~l~~~-p~-~~~l~~L~~L~L~~N~l~~ 310 (312)
T 1wwl_A 274 AKLSVLDLSYNRLDRN-PS-PDELPQVGNLSLKGNPFLD 310 (312)
T ss_dssp SEEEEEECCSSCCCSC-CC-TTTSCEEEEEECTTCTTTC
T ss_pred CCceEEECCCCCCCCC-hh-HhhCCCCCEEeccCCCCCC
Confidence 8999999999999765 65 8999999999999999885
|
| >3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} | Back alignment and structure |
|---|
Probab=99.92 E-value=1.6e-23 Score=207.11 Aligned_cols=265 Identities=23% Similarity=0.242 Sum_probs=134.3
Q ss_pred CCceeecccccccccccccccCCcccEEeCCCCcccCCcchHhhhcCCCCcEEEcccCCCCCCCCCCCCcCCCCCcEEEc
Q 036411 156 PLKVLQLSHCHLNVNSSFLLHQHHLKFLDLSHNQLVGNFPTWLLQNNTGLEVLILWNNSFSGILPRLPNAKYDKLRHLDI 235 (487)
Q Consensus 156 ~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l 235 (487)
.++.++++++.++.++..+. ++|+.|++++|.++ .++. .+++|++|++++|.+..... .+++|+.|++
T Consensus 41 ~l~~L~ls~n~L~~lp~~l~--~~L~~L~L~~N~l~-~lp~----~l~~L~~L~Ls~N~l~~lp~-----~l~~L~~L~L 108 (622)
T 3g06_A 41 GNAVLNVGESGLTTLPDCLP--AHITTLVIPDNNLT-SLPA----LPPELRTLEVSGNQLTSLPV-----LPPGLLELSI 108 (622)
T ss_dssp CCCEEECCSSCCSCCCSCCC--TTCSEEEECSCCCS-CCCC----CCTTCCEEEECSCCCSCCCC-----CCTTCCEEEE
T ss_pred CCcEEEecCCCcCccChhhC--CCCcEEEecCCCCC-CCCC----cCCCCCEEEcCCCcCCcCCC-----CCCCCCEEEC
Confidence 35666666666655555433 56666666666655 3433 34566666666665543221 3455666666
Q ss_pred cCCcccccCCcccccccCceEEEEccCCCCCCCcchhhhccccCcEEecccccCCCCCchhhhcCCCCCcEEECCCCccC
Q 036411 236 STNNFSGKLPENLGIVFQKLIYLDVSKNSFEGNIPYSISEMKELITLDLSRNNFSGELPRSIFSSCLSLETLDLSNNNFY 315 (487)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 315 (487)
++|.+. .++. .+++|+.|++++|.++. ++. .+++|+.|++++|.+. .++. .+.+|+.|++++|.+.
T Consensus 109 s~N~l~-~l~~----~l~~L~~L~L~~N~l~~-lp~---~l~~L~~L~Ls~N~l~-~l~~----~~~~L~~L~L~~N~l~ 174 (622)
T 3g06_A 109 FSNPLT-HLPA----LPSGLCKLWIFGNQLTS-LPV---LPPGLQELSVSDNQLA-SLPA----LPSELCKLWAYNNQLT 174 (622)
T ss_dssp CSCCCC-CCCC----CCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCS-CCCC----CCTTCCEEECCSSCCS
T ss_pred cCCcCC-CCCC----CCCCcCEEECCCCCCCc-CCC---CCCCCCEEECcCCcCC-CcCC----ccCCCCEEECCCCCCC
Confidence 666554 2232 23556666666665553 221 1355666666666555 3432 2345566666665554
Q ss_pred CCCCcCCcCCCCccEEEcCCCcccccccccccCCCcccEEEccCCccCCCchhhhcccccccEEecCCccccCcchhhhc
Q 036411 316 GQLFPNFMNLTHLSSLRLNNNHFSGKMADGLLSSTLLDVLDVSNNKLSGDIPHWIGNFSVLWLLLMSENYLQGSIPVQLG 395 (487)
Q Consensus 316 ~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~ 395 (487)
... ..+++|+.|++++|.+.+ .+. ..++|+.|++++|.++. +|. .+++|++|++++|.+++ .| .
T Consensus 175 ~l~----~~~~~L~~L~Ls~N~l~~-l~~---~~~~L~~L~L~~N~l~~-l~~---~~~~L~~L~Ls~N~L~~-lp---~ 238 (622)
T 3g06_A 175 SLP----MLPSGLQELSVSDNQLAS-LPT---LPSELYKLWAYNNRLTS-LPA---LPSGLKELIVSGNRLTS-LP---V 238 (622)
T ss_dssp CCC----CCCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSS-CCC---CCTTCCEEECCSSCCSC-CC---C
T ss_pred CCc----ccCCCCcEEECCCCCCCC-CCC---ccchhhEEECcCCcccc-cCC---CCCCCCEEEccCCccCc-CC---C
Confidence 322 234555666666555542 111 12455555555555542 221 23455555555555542 22 2
Q ss_pred cCcCCcEEeccCCccccccccccCCCcceEEEeeCcccCCcchHhhhccCcceEEeCCCCcccccCccccc
Q 036411 396 NLESLEFIDISENGLSVSMVSLSNLSSVKHIYLHNNAINGLIPIALLRSSTLLTLDLRDNKFFGRIPHQIN 466 (487)
Q Consensus 396 ~~~~L~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~ 466 (487)
.+++|+.|++++|.++..+. .+++|+.|++++|.++. +|..+..+++|+.|++++|++++..+..+.
T Consensus 239 ~l~~L~~L~Ls~N~L~~lp~---~~~~L~~L~Ls~N~L~~-lp~~l~~l~~L~~L~L~~N~l~~~~~~~l~ 305 (622)
T 3g06_A 239 LPSELKELMVSGNRLTSLPM---LPSGLLSLSVYRNQLTR-LPESLIHLSSETTVNLEGNPLSERTLQALR 305 (622)
T ss_dssp CCTTCCEEECCSSCCSCCCC---CCTTCCEEECCSSCCCS-CCGGGGGSCTTCEEECCSCCCCHHHHHHHH
T ss_pred CCCcCcEEECCCCCCCcCCc---ccccCcEEeCCCCCCCc-CCHHHhhccccCEEEecCCCCCCcCHHHHH
Confidence 33455555555555543322 34555555555555553 244455555555555555555544444443
|
| >3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} | Back alignment and structure |
|---|
Probab=99.91 E-value=2.3e-25 Score=204.46 Aligned_cols=261 Identities=21% Similarity=0.146 Sum_probs=163.7
Q ss_pred cccEEeCCCCcccCCcchHhhhcCCCCcEEEcccCCCCCCCCCCCCcCCCCCcEEEccCCcccccCCcccccccCceEEE
Q 036411 179 HLKFLDLSHNQLVGNFPTWLLQNNTGLEVLILWNNSFSGILPRLPNAKYDKLRHLDISTNNFSGKLPENLGIVFQKLIYL 258 (487)
Q Consensus 179 ~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L 258 (487)
.++..+++.+.+. ..+..++..+++|++|++++|.+....+. .+..+++|+.|++++|.+.+..+ ...+++|++|
T Consensus 11 ~l~i~~ls~~~l~-~~~~~~~~~~~~L~~L~L~~n~l~~~~~~-~~~~l~~L~~L~Ls~n~l~~~~~---~~~l~~L~~L 85 (317)
T 3o53_A 11 RYKIEKVTDSSLK-QALASLRQSAWNVKELDLSGNPLSQISAA-DLAPFTKLELLNLSSNVLYETLD---LESLSTLRTL 85 (317)
T ss_dssp EEEEESCCTTTHH-HHHHHHHTTGGGCSEEECTTSCCCCCCHH-HHTTCTTCCEEECTTSCCEEEEE---ETTCTTCCEE
T ss_pred ceeEeeccccchh-hhHHHHhccCCCCCEEECcCCccCcCCHH-HhhCCCcCCEEECCCCcCCcchh---hhhcCCCCEE
Confidence 4555666666654 44455566677888888888877654332 34567778888888877763322 3345677777
Q ss_pred EccCCCCCCCcchhhhccccCcEEecccccCCCCCchhhhcCCCCCcEEECCCCccCCCCCcCCcCCCCccEEEcCCCcc
Q 036411 259 DVSKNSFEGNIPYSISEMKELITLDLSRNNFSGELPRSIFSSCLSLETLDLSNNNFYGQLFPNFMNLTHLSSLRLNNNHF 338 (487)
Q Consensus 259 ~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 338 (487)
++++|.+++. ...++|+.|++++|.+. .++.. .+++|++|++++|.+.+..+..+..+++|+.|++++|.+
T Consensus 86 ~Ls~n~l~~l-----~~~~~L~~L~l~~n~l~-~~~~~---~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l 156 (317)
T 3o53_A 86 DLNNNYVQEL-----LVGPSIETLHAANNNIS-RVSCS---RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEI 156 (317)
T ss_dssp ECCSSEEEEE-----EECTTCCEEECCSSCCS-EEEEC---CCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCC
T ss_pred ECcCCccccc-----cCCCCcCEEECCCCccC-CcCcc---ccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCC
Confidence 7777776522 23467777777777776 44432 356677777777777665555666667777777777776
Q ss_pred cccccccc-cCCCcccEEEccCCccCCCchhhhcccccccEEecCCccccCcchhhhccCcCCcEEeccCCccccccccc
Q 036411 339 SGKMADGL-LSSTLLDVLDVSNNKLSGDIPHWIGNFSVLWLLLMSENYLQGSIPVQLGNLESLEFIDISENGLSVSMVSL 417 (487)
Q Consensus 339 ~~~~~~~~-~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~ 417 (487)
.+..+..+ ..+++|+.|++++|.+++. + ....+++|++|++++|.+.+ .+..+..+++|+.|++++|+++..+..+
T Consensus 157 ~~~~~~~~~~~l~~L~~L~L~~N~l~~~-~-~~~~l~~L~~L~Ls~N~l~~-l~~~~~~l~~L~~L~L~~N~l~~l~~~~ 233 (317)
T 3o53_A 157 DTVNFAELAASSDTLEHLNLQYNFIYDV-K-GQVVFAKLKTLDLSSNKLAF-MGPEFQSAAGVTWISLRNNKLVLIEKAL 233 (317)
T ss_dssp CEEEGGGGGGGTTTCCEEECTTSCCCEE-E-CCCCCTTCCEEECCSSCCCE-ECGGGGGGTTCSEEECTTSCCCEECTTC
T ss_pred CcccHHHHhhccCcCCEEECCCCcCccc-c-cccccccCCEEECCCCcCCc-chhhhcccCcccEEECcCCcccchhhHh
Confidence 65544444 2556777777777766533 2 22236667777777766663 3334666666777777776666555555
Q ss_pred cCCCcceEEEeeCcccC-CcchHhhhccCcceEEeCCCCc
Q 036411 418 SNLSSVKHIYLHNNAIN-GLIPIALLRSSTLLTLDLRDNK 456 (487)
Q Consensus 418 ~~~~~L~~L~l~~~~~~-~~~~~~~~~~~~L~~L~l~~~~ 456 (487)
..+++|+.|++++|.+. +..+.++..+++|+.++++++.
T Consensus 234 ~~l~~L~~L~l~~N~~~~~~~~~~~~~~~~L~~l~l~~~~ 273 (317)
T 3o53_A 234 RFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVK 273 (317)
T ss_dssp CCCTTCCEEECTTCCCBHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred hcCCCCCEEEccCCCccCcCHHHHHhccccceEEECCCch
Confidence 56666666666666666 4455566666666666666443
|
| >2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* | Back alignment and structure |
|---|
Probab=99.91 E-value=3.3e-23 Score=186.45 Aligned_cols=207 Identities=22% Similarity=0.209 Sum_probs=158.9
Q ss_pred CceEEEEccCCCCCCCcchhhhccccCcEEecccccCCCCCchhhhcCCCCCcEEECCCCccCCCCCcCCcCCCCccEEE
Q 036411 253 QKLIYLDVSKNSFEGNIPYSISEMKELITLDLSRNNFSGELPRSIFSSCLSLETLDLSNNNFYGQLFPNFMNLTHLSSLR 332 (487)
Q Consensus 253 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~ 332 (487)
+++++|++++|.+++..+..+..+++|+.|++++|.+. .++...|..+++|++|++++|.+.+..+..+..+++|++|+
T Consensus 28 ~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 106 (276)
T 2z62_A 28 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQ-TIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLV 106 (276)
T ss_dssp TTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCC-EECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEE
T ss_pred CCccEEECCCCcccccCHhHhccccCCcEEECCCCcCC-ccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEE
Confidence 56788888888777555556777888888888888877 66666677788888888888887766667777888888888
Q ss_pred cCCCcccccccccccCCCcccEEEccCCccCCC-chhhhcccccccEEecCCccccCcchhhhccCcCCc----EEeccC
Q 036411 333 LNNNHFSGKMADGLLSSTLLDVLDVSNNKLSGD-IPHWIGNFSVLWLLLMSENYLQGSIPVQLGNLESLE----FIDISE 407 (487)
Q Consensus 333 l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~-~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~----~l~l~~ 407 (487)
+.+|.+.+.....+..+++|++|++++|.+.+. +|..+..+++|++|++++|.+.+..+..+..+++|+ .+++++
T Consensus 107 l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~l~l~L~ls~ 186 (276)
T 2z62_A 107 AVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSL 186 (276)
T ss_dssp CTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCEEEECCS
T ss_pred CCCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcCCHHHhhhhhhccccceeeecCC
Confidence 888887766565677788888888888888753 577888888888888888888766566666666666 788888
Q ss_pred CccccccccccCCCcceEEEeeCcccCCcchHhhhccCcceEEeCCCCccccc
Q 036411 408 NGLSVSMVSLSNLSSVKHIYLHNNAINGLIPIALLRSSTLLTLDLRDNKFFGR 460 (487)
Q Consensus 408 ~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~ 460 (487)
|++...........+|++|++++|.+++..+..+..+++|+.|++++|++.+.
T Consensus 187 n~l~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~ 239 (276)
T 2z62_A 187 NPMNFIQPGAFKEIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCS 239 (276)
T ss_dssp SCCCEECTTSSCSCCEEEEECCSSCCSCCCTTTTTTCCSCCEEECCSSCBCCC
T ss_pred CcccccCccccCCCcccEEECCCCceeecCHhHhcccccccEEEccCCccccc
Confidence 88876655555556788888888888877666677788888888888887643
|
| >3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} | Back alignment and structure |
|---|
Probab=99.91 E-value=8.9e-24 Score=204.94 Aligned_cols=235 Identities=24% Similarity=0.226 Sum_probs=110.3
Q ss_pred CCCcEEEccCCcccccCCcccccccCceEEEEccCCCCCCCcchhhhccccCcEEecccccCCCCCchhhhcCCCCCcEE
Q 036411 228 DKLRHLDISTNNFSGKLPENLGIVFQKLIYLDVSKNSFEGNIPYSISEMKELITLDLSRNNFSGELPRSIFSSCLSLETL 307 (487)
Q Consensus 228 ~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L 307 (487)
++|+.|++++|.+.+..+..+ ..+++|++|++++|.+++..+ +..+++|+.|++++|.+. .++. .++|+.|
T Consensus 34 ~~L~~L~Ls~n~l~~~~~~~~-~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~-~l~~-----~~~L~~L 104 (487)
T 3oja_A 34 WNVKELDLSGNPLSQISAADL-APFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQ-ELLV-----GPSIETL 104 (487)
T ss_dssp GGCCEEECCSSCCCCCCGGGG-TTCTTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSEEE-EEEE-----CTTCCEE
T ss_pred CCccEEEeeCCcCCCCCHHHH-hCCCCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCcCC-CCCC-----CCCcCEE
Confidence 345555555555542222222 233455555555555543222 444555555555555544 2221 2455555
Q ss_pred ECCCCccCCCCCcCCcCCCCccEEEcCCCcccccccccccCCCcccEEEccCCccCCCchhhhc-ccccccEEecCCccc
Q 036411 308 DLSNNNFYGQLFPNFMNLTHLSSLRLNNNHFSGKMADGLLSSTLLDVLDVSNNKLSGDIPHWIG-NFSVLWLLLMSENYL 386 (487)
Q Consensus 308 ~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~-~~~~L~~L~l~~~~~ 386 (487)
++++|.+.+..+. .+++|+.|++++|.+++..+..+..+++|+.|++++|.+++..|..+. .+++|++|++++|.+
T Consensus 105 ~L~~N~l~~~~~~---~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l 181 (487)
T 3oja_A 105 HAANNNISRVSCS---RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFI 181 (487)
T ss_dssp ECCSSCCCCEEEC---CCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCC
T ss_pred ECcCCcCCCCCcc---ccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCcc
Confidence 5555554433221 234455555555555544444444455555555555555444444443 445555555555554
Q ss_pred cCcchhhhccCcCCcEEeccCCccccccccccCCCcceEEEeeCcccCCcchHhhhccCcceEEeCCCCccc-ccCcccc
Q 036411 387 QGSIPVQLGNLESLEFIDISENGLSVSMVSLSNLSSVKHIYLHNNAINGLIPIALLRSSTLLTLDLRDNKFF-GRIPHQI 465 (487)
Q Consensus 387 ~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~-~~~~~~l 465 (487)
++. + ....+++|+.|++++|.++..++.+..+++|+.|++++|.+++ +|..+..+++|+.|++++|++. +.+|..+
T Consensus 182 ~~~-~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~L~~L~Ls~N~l~~-lp~~l~~l~~L~~L~l~~N~l~c~~~~~~~ 258 (487)
T 3oja_A 182 YDV-K-GQVVFAKLKTLDLSSNKLAFMGPEFQSAAGVTWISLRNNKLVL-IEKALRFSQNLEHFDLRGNGFHCGTLRDFF 258 (487)
T ss_dssp CEE-E-CCCCCTTCCEEECCSSCCCEECGGGGGGTTCSEEECTTSCCCE-ECTTCCCCTTCCEEECTTCCBCHHHHHHHH
T ss_pred ccc-c-ccccCCCCCEEECCCCCCCCCCHhHcCCCCccEEEecCCcCcc-cchhhccCCCCCEEEcCCCCCcCcchHHHH
Confidence 422 1 1123455555555555554444444445555555555555543 2333444455555555555543 3344444
Q ss_pred cccCceeEEecc
Q 036411 466 NELSNLHFLLLR 477 (487)
Q Consensus 466 ~~l~~L~~L~l~ 477 (487)
..++.|+.+++.
T Consensus 259 ~~l~~L~~l~~~ 270 (487)
T 3oja_A 259 SKNQRVQTVAKQ 270 (487)
T ss_dssp TTCHHHHHHHHH
T ss_pred HhCCCCcEEecc
Confidence 455555544443
|
| >2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} | Back alignment and structure |
|---|
Probab=99.91 E-value=6.7e-23 Score=183.53 Aligned_cols=202 Identities=23% Similarity=0.248 Sum_probs=137.7
Q ss_pred CceEEEEccCCCCCCCcchhhhccccCcEEecccccCCCCCchhhhcCCCCCcEEECCCCccCCCCCcCCcCCCCccEEE
Q 036411 253 QKLIYLDVSKNSFEGNIPYSISEMKELITLDLSRNNFSGELPRSIFSSCLSLETLDLSNNNFYGQLFPNFMNLTHLSSLR 332 (487)
Q Consensus 253 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~ 332 (487)
...+.++++++.++ .++..+ .++++.|++++|.+. .++...|..+++|++|++++|.+.+.....+..+++|++|+
T Consensus 16 ~~~~~l~~~~~~l~-~ip~~~--~~~l~~L~l~~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~ 91 (270)
T 2o6q_A 16 NNKNSVDCSSKKLT-AIPSNI--PADTKKLDLQSNKLS-SLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLW 91 (270)
T ss_dssp TTTTEEECTTSCCS-SCCSCC--CTTCSEEECCSSCCS-CCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEE
T ss_pred CCCCEEEccCCCCC-ccCCCC--CCCCCEEECcCCCCC-eeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEE
Confidence 35667777777776 334333 256777888877776 66665667777788888877777655555566777777777
Q ss_pred cCCCcccccccccccCCCcccEEEccCCccCCCchhhhcccccccEEecCCccccCcchhhhccCcCCcEEeccCCcccc
Q 036411 333 LNNNHFSGKMADGLLSSTLLDVLDVSNNKLSGDIPHWIGNFSVLWLLLMSENYLQGSIPVQLGNLESLEFIDISENGLSV 412 (487)
Q Consensus 333 l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~ 412 (487)
+++|.+.......+..+++|++|++++|+++...+..+..+++|++|++++|.+....+..+..+++|+.|++++|.+..
T Consensus 92 l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~ 171 (270)
T 2o6q_A 92 VTDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKR 171 (270)
T ss_dssp CCSSCCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSC
T ss_pred CCCCcCCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCccCHhHccCCcccceeEecCCcCcE
Confidence 77777765555566677777777777777776666667777777777777777765545556667777777777776654
Q ss_pred ccc-cccCCCcceEEEeeCcccCCcchHhhhccCcceEEeCCCCccc
Q 036411 413 SMV-SLSNLSSVKHIYLHNNAINGLIPIALLRSSTLLTLDLRDNKFF 458 (487)
Q Consensus 413 ~~~-~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 458 (487)
... .+..+++|++|++++|.+++..+..+..+++|+.|++++|++.
T Consensus 172 ~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~ 218 (270)
T 2o6q_A 172 VPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQENPWD 218 (270)
T ss_dssp CCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred eChhHhccCCCcCEEECCCCcCCcCCHHHhccccCCCEEEecCCCee
Confidence 433 3456677777777777776665556666677777777777664
|
| >2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* | Back alignment and structure |
|---|
Probab=99.91 E-value=3.4e-23 Score=186.39 Aligned_cols=208 Identities=25% Similarity=0.257 Sum_probs=181.2
Q ss_pred ccCcEEecccccCCCCCchhhhcCCCCCcEEECCCCccCCCCCcCCcCCCCccEEEcCCCcccccccccccCCCcccEEE
Q 036411 277 KELITLDLSRNNFSGELPRSIFSSCLSLETLDLSNNNFYGQLFPNFMNLTHLSSLRLNNNHFSGKMADGLLSSTLLDVLD 356 (487)
Q Consensus 277 ~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~ 356 (487)
++++.|++++|.+. .++...|..+++|++|++++|.+.+..+..+..+++|+.|++++|.+.+..+..+..+++|++|+
T Consensus 28 ~~l~~L~ls~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 106 (276)
T 2z62_A 28 FSTKNLDLSFNPLR-HLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLV 106 (276)
T ss_dssp TTCCEEECTTCCCC-EECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEE
T ss_pred CCccEEECCCCccc-ccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEE
Confidence 57999999999998 77776788999999999999999877777889999999999999999877778899999999999
Q ss_pred ccCCccCCCchhhhcccccccEEecCCccccCc-chhhhccCcCCcEEeccCCcccccc-ccccCCCcce----EEEeeC
Q 036411 357 VSNNKLSGDIPHWIGNFSVLWLLLMSENYLQGS-IPVQLGNLESLEFIDISENGLSVSM-VSLSNLSSVK----HIYLHN 430 (487)
Q Consensus 357 l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~-~~~~~~~~~~L~~l~l~~~~~~~~~-~~~~~~~~L~----~L~l~~ 430 (487)
+++|.+.+..+..++.+++|++|++++|.+... .|..+..+++|+.|++++|++.... ..+..+++|+ .|++++
T Consensus 107 l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~l~l~L~ls~ 186 (276)
T 2z62_A 107 AVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSL 186 (276)
T ss_dssp CTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCEEEECCS
T ss_pred CCCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcCCHHHhhhhhhccccceeeecCC
Confidence 999999877777799999999999999999863 5888999999999999999986443 3455555565 899999
Q ss_pred cccCCcchHhhhccCcceEEeCCCCcccccCcccccccCceeEEeccCCccCCCCC
Q 036411 431 NAINGLIPIALLRSSTLLTLDLRDNKFFGRIPHQINELSNLHFLLLRGNSLQGRIP 486 (487)
Q Consensus 431 ~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~p 486 (487)
|.++...+..+.. .+|+.|++++|.++...+..+..+++|+.|++++||+.+..|
T Consensus 187 n~l~~~~~~~~~~-~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~ 241 (276)
T 2z62_A 187 NPMNFIQPGAFKE-IRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 241 (276)
T ss_dssp SCCCEECTTSSCS-CCEEEEECCSSCCSCCCTTTTTTCCSCCEEECCSSCBCCCTT
T ss_pred CcccccCccccCC-CcccEEECCCCceeecCHhHhcccccccEEEccCCcccccCC
Confidence 9999776655543 589999999999987777788999999999999999998765
|
| >3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} | Back alignment and structure |
|---|
Probab=99.90 E-value=1.4e-22 Score=200.38 Aligned_cols=266 Identities=26% Similarity=0.232 Sum_probs=159.2
Q ss_pred cceEEEeccCCCccccccccccCCCCCceeecccccccccccccccCCcccEEeCCCCcccCCcchHhhhcCCCCcEEEc
Q 036411 131 KLEVLVLSSGNDMLQVKTENWLPTYPLKVLQLSHCHLNVNSSFLLHQHHLKFLDLSHNQLVGNFPTWLLQNNTGLEVLIL 210 (487)
Q Consensus 131 ~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l 210 (487)
+++.++++++. +..++.... ++|+.|++++|.++.++. .+++|+.|++++|.++ .++. .+++|++|++
T Consensus 41 ~l~~L~ls~n~-L~~lp~~l~---~~L~~L~L~~N~l~~lp~---~l~~L~~L~Ls~N~l~-~lp~----~l~~L~~L~L 108 (622)
T 3g06_A 41 GNAVLNVGESG-LTTLPDCLP---AHITTLVIPDNNLTSLPA---LPPELRTLEVSGNQLT-SLPV----LPPGLLELSI 108 (622)
T ss_dssp CCCEEECCSSC-CSCCCSCCC---TTCSEEEECSCCCSCCCC---CCTTCCEEEECSCCCS-CCCC----CCTTCCEEEE
T ss_pred CCcEEEecCCC-cCccChhhC---CCCcEEEecCCCCCCCCC---cCCCCCEEEcCCCcCC-cCCC----CCCCCCEEEC
Confidence 46666665433 333333221 467777777776655554 3566777777777665 3443 4567777777
Q ss_pred ccCCCCCCCCCCCCcCCCCCcEEEccCCcccccCCcccccccCceEEEEccCCCCCCCcchhhhccccCcEEecccccCC
Q 036411 211 WNNSFSGILPRLPNAKYDKLRHLDISTNNFSGKLPENLGIVFQKLIYLDVSKNSFEGNIPYSISEMKELITLDLSRNNFS 290 (487)
Q Consensus 211 ~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 290 (487)
++|.+..... .+++|+.|++++|.+. .++.. +++|++|++++|.+++. +. .+++|+.|++++|.+.
T Consensus 109 s~N~l~~l~~-----~l~~L~~L~L~~N~l~-~lp~~----l~~L~~L~Ls~N~l~~l-~~---~~~~L~~L~L~~N~l~ 174 (622)
T 3g06_A 109 FSNPLTHLPA-----LPSGLCKLWIFGNQLT-SLPVL----PPGLQELSVSDNQLASL-PA---LPSELCKLWAYNNQLT 174 (622)
T ss_dssp CSCCCCCCCC-----CCTTCCEEECCSSCCS-CCCCC----CTTCCEEECCSSCCSCC-CC---CCTTCCEEECCSSCCS
T ss_pred cCCcCCCCCC-----CCCCcCEEECCCCCCC-cCCCC----CCCCCEEECcCCcCCCc-CC---ccCCCCEEECCCCCCC
Confidence 7766654322 3466777777777665 33332 35677777777766532 21 3456677777777766
Q ss_pred CCCchhhhcCCCCCcEEECCCCccCCCCCcCCcCCCCccEEEcCCCcccccccccccCCCcccEEEccCCccCCCchhhh
Q 036411 291 GELPRSIFSSCLSLETLDLSNNNFYGQLFPNFMNLTHLSSLRLNNNHFSGKMADGLLSSTLLDVLDVSNNKLSGDIPHWI 370 (487)
Q Consensus 291 ~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~ 370 (487)
.++ ..+++|+.|++++|.+.+.. . .+++|+.|++.+|.+.. .+. .+++|+.|++++|++++ +|
T Consensus 175 -~l~----~~~~~L~~L~Ls~N~l~~l~-~---~~~~L~~L~L~~N~l~~-l~~---~~~~L~~L~Ls~N~L~~-lp--- 237 (622)
T 3g06_A 175 -SLP----MLPSGLQELSVSDNQLASLP-T---LPSELYKLWAYNNRLTS-LPA---LPSGLKELIVSGNRLTS-LP--- 237 (622)
T ss_dssp -CCC----CCCTTCCEEECCSSCCSCCC-C---CCTTCCEEECCSSCCSS-CCC---CCTTCCEEECCSSCCSC-CC---
T ss_pred -CCc----ccCCCCcEEECCCCCCCCCC-C---ccchhhEEECcCCcccc-cCC---CCCCCCEEEccCCccCc-CC---
Confidence 555 23566777777777665422 1 23567777777776652 222 23567777777776653 33
Q ss_pred cccccccEEecCCccccCcchhhhccCcCCcEEeccCCccccccccccCCCcceEEEeeCcccCCcchHhhhc
Q 036411 371 GNFSVLWLLLMSENYLQGSIPVQLGNLESLEFIDISENGLSVSMVSLSNLSSVKHIYLHNNAINGLIPIALLR 443 (487)
Q Consensus 371 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~ 443 (487)
..+++|++|++++|.++ ..|. .+++|+.|++++|.++..+..+..+++|+.|++++|.+++..+..+..
T Consensus 238 ~~l~~L~~L~Ls~N~L~-~lp~---~~~~L~~L~Ls~N~L~~lp~~l~~l~~L~~L~L~~N~l~~~~~~~l~~ 306 (622)
T 3g06_A 238 VLPSELKELMVSGNRLT-SLPM---LPSGLLSLSVYRNQLTRLPESLIHLSSETTVNLEGNPLSERTLQALRE 306 (622)
T ss_dssp CCCTTCCEEECCSSCCS-CCCC---CCTTCCEEECCSSCCCSCCGGGGGSCTTCEEECCSCCCCHHHHHHHHH
T ss_pred CCCCcCcEEECCCCCCC-cCCc---ccccCcEEeCCCCCCCcCCHHHhhccccCEEEecCCCCCCcCHHHHHh
Confidence 44566777777777666 3333 446677777777777656666666777777777777776655555443
|
| >3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} | Back alignment and structure |
|---|
Probab=99.90 E-value=3.2e-24 Score=208.07 Aligned_cols=215 Identities=22% Similarity=0.196 Sum_probs=95.2
Q ss_pred ceEEEEccCCCCCCCcchhhhccccCcEEecccccCCCCCchhhhcCCCCCcEEECCCCccCCCCCcCCcCCCCccEEEc
Q 036411 254 KLIYLDVSKNSFEGNIPYSISEMKELITLDLSRNNFSGELPRSIFSSCLSLETLDLSNNNFYGQLFPNFMNLTHLSSLRL 333 (487)
Q Consensus 254 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l 333 (487)
+|++|++++|.+.+..+..+..+++|+.|++++|.+.+ .+. |..+++|++|++++|.+.+.. ..++|+.|++
T Consensus 35 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~-~~~--l~~l~~L~~L~Ls~N~l~~l~-----~~~~L~~L~L 106 (487)
T 3oja_A 35 NVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYE-TLD--LESLSTLRTLDLNNNYVQELL-----VGPSIETLHA 106 (487)
T ss_dssp GCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEE-EEE--CTTCTTCCEEECCSSEEEEEE-----ECTTCCEEEC
T ss_pred CccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCC-Ccc--cccCCCCCEEEecCCcCCCCC-----CCCCcCEEEC
Confidence 44455555544444334444444445555554444442 111 344444555555444443211 1144445555
Q ss_pred CCCcccccccccccCCCcccEEEccCCccCCCchhhhcccccccEEecCCccccCcchhhhc-cCcCCcEEeccCCcccc
Q 036411 334 NNNHFSGKMADGLLSSTLLDVLDVSNNKLSGDIPHWIGNFSVLWLLLMSENYLQGSIPVQLG-NLESLEFIDISENGLSV 412 (487)
Q Consensus 334 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~-~~~~L~~l~l~~~~~~~ 412 (487)
++|.+.+..+. .+++|+.|++++|.+++..|..++.+++|++|++++|.+++..+..+. .+++|+.|++++|.++.
T Consensus 107 ~~N~l~~~~~~---~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~~ 183 (487)
T 3oja_A 107 ANNNISRVSCS---RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYD 183 (487)
T ss_dssp CSSCCCCEEEC---CCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCE
T ss_pred cCCcCCCCCcc---ccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCcccc
Confidence 54444432222 124444555555544444444444444555555555444443343332 34445555555544432
Q ss_pred ccccccCCCcceEEEeeCcccCCcchHhhhccCcceEEeCCCCcccccCcccccccCceeEEeccCCccC
Q 036411 413 SMVSLSNLSSVKHIYLHNNAINGLIPIALLRSSTLLTLDLRDNKFFGRIPHQINELSNLHFLLLRGNSLQ 482 (487)
Q Consensus 413 ~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~ 482 (487)
. .....+++|+.|++++|.+++.++. +..+++|+.|++++|.+++ +|..+..+++|+.|++++|++.
T Consensus 184 ~-~~~~~l~~L~~L~Ls~N~l~~~~~~-~~~l~~L~~L~Ls~N~l~~-lp~~l~~l~~L~~L~l~~N~l~ 250 (487)
T 3oja_A 184 V-KGQVVFAKLKTLDLSSNKLAFMGPE-FQSAAGVTWISLRNNKLVL-IEKALRFSQNLEHFDLRGNGFH 250 (487)
T ss_dssp E-ECCCCCTTCCEEECCSSCCCEECGG-GGGGTTCSEEECTTSCCCE-ECTTCCCCTTCCEEECTTCCBC
T ss_pred c-cccccCCCCCEEECCCCCCCCCCHh-HcCCCCccEEEecCCcCcc-cchhhccCCCCCEEEcCCCCCc
Confidence 2 2222344455555555444433222 4444445555555544432 3334444445555555554443
|
| >1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.89 E-value=2.2e-24 Score=197.44 Aligned_cols=202 Identities=18% Similarity=0.181 Sum_probs=139.1
Q ss_pred cCceEEEEccCCCCCCCcchhh--hccccCcEEecccccCCCCCchhhhcCC-----CCCcEEECCCCccCCCCCcCCcC
Q 036411 252 FQKLIYLDVSKNSFEGNIPYSI--SEMKELITLDLSRNNFSGELPRSIFSSC-----LSLETLDLSNNNFYGQLFPNFMN 324 (487)
Q Consensus 252 ~~~L~~L~l~~~~~~~~~~~~~--~~~~~L~~L~l~~~~~~~~~~~~~~~~~-----~~L~~L~l~~~~~~~~~~~~~~~ 324 (487)
+++|++|++++|.+.+..+..+ ..+++|+.|++++|.+. ..|. .+..+ ++|++|++++|.+.+..+..+..
T Consensus 94 l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~~~~-~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~ 171 (312)
T 1wwl_A 94 ISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWA-TRDA-WLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRV 171 (312)
T ss_dssp TSCCCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESCBCS-SSSS-HHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCC
T ss_pred cCCccEEEccCCcccchhHHHHHHhcCCCccEEEccCCCCc-chhH-HHHHHHHhhcCCCcEEEeeCCCCccchHHHhcc
Confidence 3566666666666655444443 56666777777776666 3332 23333 67777777777776666666777
Q ss_pred CCCccEEEcCCCccccc--cccc--ccCCCcccEEEccCCccCCC---chhhhcccccccEEecCCccccCcch-hhhcc
Q 036411 325 LTHLSSLRLNNNHFSGK--MADG--LLSSTLLDVLDVSNNKLSGD---IPHWIGNFSVLWLLLMSENYLQGSIP-VQLGN 396 (487)
Q Consensus 325 ~~~L~~L~l~~~~~~~~--~~~~--~~~~~~L~~L~l~~~~~~~~---~~~~~~~~~~L~~L~l~~~~~~~~~~-~~~~~ 396 (487)
+++|++|++++|.+.+. .+.. +..+++|++|++++|++++. ....+..+++|++|++++|.+.+..+ ..+..
T Consensus 172 l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~ 251 (312)
T 1wwl_A 172 FPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDW 251 (312)
T ss_dssp CSSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCC
T ss_pred CCCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhh
Confidence 77777777777775432 1222 26677888888888887631 12344567888888888888876553 34556
Q ss_pred CcCCcEEeccCCccccccccccCCCcceEEEeeCcccCCcchHhhhccCcceEEeCCCCcccc
Q 036411 397 LESLEFIDISENGLSVSMVSLSNLSSVKHIYLHNNAINGLIPIALLRSSTLLTLDLRDNKFFG 459 (487)
Q Consensus 397 ~~~L~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~ 459 (487)
+++|+.|++++|.++..+..+. ++|++|++++|++++. |. +..+++|+.|++++|++++
T Consensus 252 l~~L~~L~Ls~N~l~~ip~~~~--~~L~~L~Ls~N~l~~~-p~-~~~l~~L~~L~L~~N~l~~ 310 (312)
T 1wwl_A 252 PSQLNSLNLSFTGLKQVPKGLP--AKLSVLDLSYNRLDRN-PS-PDELPQVGNLSLKGNPFLD 310 (312)
T ss_dssp CTTCCEEECTTSCCSSCCSSCC--SEEEEEECCSSCCCSC-CC-TTTSCEEEEEECTTCTTTC
T ss_pred cCCCCEEECCCCccChhhhhcc--CCceEEECCCCCCCCC-hh-HhhCCCCCEEeccCCCCCC
Confidence 7889999999998875555554 8899999999999876 44 7788999999999998864
|
| >2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} | Back alignment and structure |
|---|
Probab=99.89 E-value=8.1e-22 Score=176.51 Aligned_cols=203 Identities=22% Similarity=0.265 Sum_probs=171.8
Q ss_pred CCcEEEccCCcccccCCcccccccCceEEEEccCCCCCCCcchhhhccccCcEEecccccCCCCCchhhhcCCCCCcEEE
Q 036411 229 KLRHLDISTNNFSGKLPENLGIVFQKLIYLDVSKNSFEGNIPYSISEMKELITLDLSRNNFSGELPRSIFSSCLSLETLD 308 (487)
Q Consensus 229 ~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~ 308 (487)
..+.++++++.++ .+|..+ ++++++|++++|.+.+..+..+..+++|+.|++++|.+. .++...|..+++|++|+
T Consensus 17 ~~~~l~~~~~~l~-~ip~~~---~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~i~~~~~~~l~~L~~L~ 91 (270)
T 2o6q_A 17 NKNSVDCSSKKLT-AIPSNI---PADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQ-TLPAGIFKELKNLETLW 91 (270)
T ss_dssp TTTEEECTTSCCS-SCCSCC---CTTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCS-CCCTTTTSSCTTCCEEE
T ss_pred CCCEEEccCCCCC-ccCCCC---CCCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccC-eeChhhhcCCCCCCEEE
Confidence 5778999988887 566654 368999999999988766667888999999999999988 88888888899999999
Q ss_pred CCCCccCCCCCcCCcCCCCccEEEcCCCcccccccccccCCCcccEEEccCCccCCCchhhhcccccccEEecCCccccC
Q 036411 309 LSNNNFYGQLFPNFMNLTHLSSLRLNNNHFSGKMADGLLSSTLLDVLDVSNNKLSGDIPHWIGNFSVLWLLLMSENYLQG 388 (487)
Q Consensus 309 l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~ 388 (487)
+++|.+.+..+..+..+++|++|++++|.+....+..+..+++|++|++++|.+.+..+..+..+++|++|++++|.+..
T Consensus 92 l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~ 171 (270)
T 2o6q_A 92 VTDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKR 171 (270)
T ss_dssp CCSSCCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSC
T ss_pred CCCCcCCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCccCHhHccCCcccceeEecCCcCcE
Confidence 99999887776778889999999999999987777778889999999999999887777778899999999999999887
Q ss_pred cchhhhccCcCCcEEeccCCcccccccc-ccCCCcceEEEeeCcccCCc
Q 036411 389 SIPVQLGNLESLEFIDISENGLSVSMVS-LSNLSSVKHIYLHNNAINGL 436 (487)
Q Consensus 389 ~~~~~~~~~~~L~~l~l~~~~~~~~~~~-~~~~~~L~~L~l~~~~~~~~ 436 (487)
..+..|..+++|+.|++++|+++..... +..+++|+.|++++|.+...
T Consensus 172 ~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~ 220 (270)
T 2o6q_A 172 VPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQENPWDCT 220 (270)
T ss_dssp CCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCS
T ss_pred eChhHhccCCCcCEEECCCCcCCcCCHHHhccccCCCEEEecCCCeeCC
Confidence 6667788899999999999988755543 56789999999999987643
|
| >3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A | Back alignment and structure |
|---|
Probab=99.89 E-value=1.3e-22 Score=181.76 Aligned_cols=207 Identities=19% Similarity=0.180 Sum_probs=133.6
Q ss_pred cCceEEEEccCCCCCCCcchhhhccccCcEEecccccCCCCCchhhhcCCCCCcEEECCCCccCCCCCcCCcCCCCccEE
Q 036411 252 FQKLIYLDVSKNSFEGNIPYSISEMKELITLDLSRNNFSGELPRSIFSSCLSLETLDLSNNNFYGQLFPNFMNLTHLSSL 331 (487)
Q Consensus 252 ~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L 331 (487)
+++|+.|+++++.+... ..+..+++|+.|++++|.+. .++ .+..+++|++|++++|.+.+..+..+..+++|++|
T Consensus 40 l~~L~~L~l~~~~i~~~--~~l~~l~~L~~L~l~~n~l~-~~~--~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 114 (272)
T 3rfs_A 40 LNSIDQIIANNSDIKSV--QGIQYLPNVRYLALGGNKLH-DIS--ALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKEL 114 (272)
T ss_dssp HTTCCEEECTTSCCCCC--TTGGGCTTCCEEECTTSCCC-CCG--GGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEE
T ss_pred ccceeeeeeCCCCcccc--cccccCCCCcEEECCCCCCC-Cch--hhcCCCCCCEEECCCCccCccChhHhcCCcCCCEE
Confidence 45677777777766532 24566777777777777766 343 35667777777777777665555556667777777
Q ss_pred EcCCCcccccccccccCCCcccEEEccCCccCCCchhhhcccccccEEecCCccccCcchhhhccCcCCcEEeccCCccc
Q 036411 332 RLNNNHFSGKMADGLLSSTLLDVLDVSNNKLSGDIPHWIGNFSVLWLLLMSENYLQGSIPVQLGNLESLEFIDISENGLS 411 (487)
Q Consensus 332 ~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~ 411 (487)
++++|.+.+..+..+..+++|++|++++|++++..+..+..+++|++|++++|.+++..+..+..+++|+.|++++|++.
T Consensus 115 ~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~ 194 (272)
T 3rfs_A 115 VLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLK 194 (272)
T ss_dssp ECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCS
T ss_pred ECCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCccCHHHhcCCccCCEEECCCCcCC
Confidence 77777776555555666677777777777766555556666777777777777666555555666677777777777665
Q ss_pred ccccc-ccCCCcceEEEeeCcccCCcchHhhhccCcceEEeCCCCcccccCcccccccCc
Q 036411 412 VSMVS-LSNLSSVKHIYLHNNAINGLIPIALLRSSTLLTLDLRDNKFFGRIPHQINELSN 470 (487)
Q Consensus 412 ~~~~~-~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~ 470 (487)
..... +..+++|+.|++++|.+... +++|+.++++.|.+++.+|..++.++.
T Consensus 195 ~~~~~~~~~l~~L~~L~l~~N~~~~~-------~~~l~~l~~~~n~~~g~ip~~~~~~~~ 247 (272)
T 3rfs_A 195 SVPDGVFDRLTSLQYIWLHDNPWDCT-------CPGIRYLSEWINKHSGVVRNSAGSVAP 247 (272)
T ss_dssp CCCTTTTTTCTTCCEEECCSSCBCCC-------TTTTHHHHHHHHHTGGGBBCTTSCBCG
T ss_pred ccCHHHHhCCcCCCEEEccCCCcccc-------CcHHHHHHHHHHhCCCcccCcccccCC
Confidence 43333 44666777777776665532 345666666666666666666665554
|
| >1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A | Back alignment and structure |
|---|
Probab=99.88 E-value=1.1e-21 Score=177.11 Aligned_cols=199 Identities=21% Similarity=0.234 Sum_probs=124.8
Q ss_pred cCceEEEEccCCCCCCCcchhhhccccCcEEecccccCCCCCchhhhcCCCCCcEEECCCCccCCCCCcCCcCCCCccEE
Q 036411 252 FQKLIYLDVSKNSFEGNIPYSISEMKELITLDLSRNNFSGELPRSIFSSCLSLETLDLSNNNFYGQLFPNFMNLTHLSSL 331 (487)
Q Consensus 252 ~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L 331 (487)
++++++++++++.++ .++..+ .++++.|++++|.+. .++...|..+++|+.|++++|.+.+... ...+++|+.|
T Consensus 9 l~~l~~l~~~~~~l~-~ip~~~--~~~l~~L~L~~N~l~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L 82 (290)
T 1p9a_G 9 VASHLEVNCDKRNLT-ALPPDL--PKDTTILHLSENLLY-TFSLATLMPYTRLTQLNLDRAELTKLQV--DGTLPVLGTL 82 (290)
T ss_dssp STTCCEEECTTSCCS-SCCSCC--CTTCCEEECTTSCCS-EEEGGGGTTCTTCCEEECTTSCCCEEEC--CSCCTTCCEE
T ss_pred cCCccEEECCCCCCC-cCCCCC--CCCCCEEEcCCCcCC-ccCHHHhhcCCCCCEEECCCCccCcccC--CCCCCcCCEE
Confidence 456777777777766 333333 256777777777776 5555556677777777777777654322 2556677777
Q ss_pred EcCCCcccccccccccCCCcccEEEccCCccCCCchhhhcccccccEEecCCccccCcchhhhccCcCCcEEeccCCccc
Q 036411 332 RLNNNHFSGKMADGLLSSTLLDVLDVSNNKLSGDIPHWIGNFSVLWLLLMSENYLQGSIPVQLGNLESLEFIDISENGLS 411 (487)
Q Consensus 332 ~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~ 411 (487)
++++|.+. ..+..+..+++|+.|++++|++++..+..+..+++|++|++++|.+....+..|..+++|+.|++++|+++
T Consensus 83 ~Ls~N~l~-~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~ 161 (290)
T 1p9a_G 83 DLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLT 161 (290)
T ss_dssp ECCSSCCS-SCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCS
T ss_pred ECCCCcCC-cCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECCCCcCC
Confidence 77777665 44455566667777777777766555566666777777777777666555555666666677777666665
Q ss_pred ccccc-ccCCCcceEEEeeCcccCCcchHhhhccCcceEEeCCCCccc
Q 036411 412 VSMVS-LSNLSSVKHIYLHNNAINGLIPIALLRSSTLLTLDLRDNKFF 458 (487)
Q Consensus 412 ~~~~~-~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 458 (487)
..+.. +..+++|+.|++++|.++.. |..+....+|+.|++++|++.
T Consensus 162 ~l~~~~~~~l~~L~~L~L~~N~l~~i-p~~~~~~~~L~~l~L~~Np~~ 208 (290)
T 1p9a_G 162 ELPAGLLNGLENLDTLLLQENSLYTI-PKGFFGSHLLPFAFLHGNPWL 208 (290)
T ss_dssp CCCTTTTTTCTTCCEEECCSSCCCCC-CTTTTTTCCCSEEECCSCCBC
T ss_pred ccCHHHhcCcCCCCEEECCCCcCCcc-ChhhcccccCCeEEeCCCCcc
Confidence 44433 34566666666666666643 333444456666666666653
|
| >2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A | Back alignment and structure |
|---|
Probab=99.87 E-value=4.2e-23 Score=195.18 Aligned_cols=233 Identities=21% Similarity=0.276 Sum_probs=134.1
Q ss_pred CceEEEEccCCCCCCCcc----hhhhccccCcEEecccccCC---CCCchhh------hcCCCCCcEEECCCCccCCC--
Q 036411 253 QKLIYLDVSKNSFEGNIP----YSISEMKELITLDLSRNNFS---GELPRSI------FSSCLSLETLDLSNNNFYGQ-- 317 (487)
Q Consensus 253 ~~L~~L~l~~~~~~~~~~----~~~~~~~~L~~L~l~~~~~~---~~~~~~~------~~~~~~L~~L~l~~~~~~~~-- 317 (487)
++|++|++++|.+....+ ..+..+++|+.|++++|.+. +.+|..+ +..+++|++|++++|.+...
T Consensus 32 ~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~ 111 (386)
T 2ca6_A 32 DSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQ 111 (386)
T ss_dssp SCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCCCTTTH
T ss_pred CCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCCcCCHHHH
Confidence 455555555555543222 22445566666666654322 2222222 34566666666666666542
Q ss_pred --CCcCCcCCCCccEEEcCCCccccccccccc----CC---------CcccEEEccCCccCC-Cch---hhhcccccccE
Q 036411 318 --LFPNFMNLTHLSSLRLNNNHFSGKMADGLL----SS---------TLLDVLDVSNNKLSG-DIP---HWIGNFSVLWL 378 (487)
Q Consensus 318 --~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~----~~---------~~L~~L~l~~~~~~~-~~~---~~~~~~~~L~~ 378 (487)
.+..+..+++|++|++++|.++......+. .+ ++|++|++++|+++. ..+ ..+..+++|++
T Consensus 112 ~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~ 191 (386)
T 2ca6_A 112 EPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLHT 191 (386)
T ss_dssp HHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHHCTTCCE
T ss_pred HHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHHHHhCCCcCE
Confidence 333445566666666666666433222222 22 667777777776652 233 34556677777
Q ss_pred EecCCccccCc-----chhhhccCcCCcEEeccCCcc-----ccccccccCCCcceEEEeeCcccCCc----chHhhhc-
Q 036411 379 LLMSENYLQGS-----IPVQLGNLESLEFIDISENGL-----SVSMVSLSNLSSVKHIYLHNNAINGL----IPIALLR- 443 (487)
Q Consensus 379 L~l~~~~~~~~-----~~~~~~~~~~L~~l~l~~~~~-----~~~~~~~~~~~~L~~L~l~~~~~~~~----~~~~~~~- 443 (487)
|++++|.+... .+..+..+++|+.|++++|.+ ...+..+..+++|++|++++|.++.. ++.++..
T Consensus 192 L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~ 271 (386)
T 2ca6_A 192 VKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKL 271 (386)
T ss_dssp EECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTC
T ss_pred EECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCchhhHHHHHHHHhhc
Confidence 77777766521 222556677777777777776 33444555667777777777776654 2334433
Q ss_pred -cCcceEEeCCCCcccc----cCcccc-cccCceeEEeccCCccCCCC
Q 036411 444 -SSTLLTLDLRDNKFFG----RIPHQI-NELSNLHFLLLRGNSLQGRI 485 (487)
Q Consensus 444 -~~~L~~L~l~~~~~~~----~~~~~l-~~l~~L~~L~l~~~~~~~~~ 485 (487)
+++|+.|+|++|.++. .++..+ .++++|+.|++++|++.+..
T Consensus 272 ~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~~~~ 319 (386)
T 2ca6_A 272 ENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEED 319 (386)
T ss_dssp SSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCTTS
T ss_pred cCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCCcch
Confidence 6777777777777765 355555 55677777777777776543
|
| >3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A | Back alignment and structure |
|---|
Probab=99.87 E-value=7.3e-22 Score=176.90 Aligned_cols=221 Identities=19% Similarity=0.182 Sum_probs=185.7
Q ss_pred CceEEEEccCCCCCCCcchhhhccccCcEEecccccCCCCCchhhhcCCCCCcEEECCCCccCCCCCcCCcCCCCccEEE
Q 036411 253 QKLIYLDVSKNSFEGNIPYSISEMKELITLDLSRNNFSGELPRSIFSSCLSLETLDLSNNNFYGQLFPNFMNLTHLSSLR 332 (487)
Q Consensus 253 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~ 332 (487)
..+..+++.++.+.+. .....+++|+.|+++++.+. .++. +..+++|++|++++|.+.+ ...+..+++|++|+
T Consensus 19 ~~l~~l~l~~~~~~~~--~~~~~l~~L~~L~l~~~~i~-~~~~--l~~l~~L~~L~l~~n~l~~--~~~l~~l~~L~~L~ 91 (272)
T 3rfs_A 19 AETIKANLKKKSVTDA--VTQNELNSIDQIIANNSDIK-SVQG--IQYLPNVRYLALGGNKLHD--ISALKELTNLTYLI 91 (272)
T ss_dssp HHHHHHHHTCSCTTSE--ECHHHHTTCCEEECTTSCCC-CCTT--GGGCTTCCEEECTTSCCCC--CGGGTTCTTCCEEE
T ss_pred HHHHHHHhcCcccccc--cccccccceeeeeeCCCCcc-cccc--cccCCCCcEEECCCCCCCC--chhhcCCCCCCEEE
Confidence 3556667777766533 34567899999999999987 5554 5779999999999999875 35788899999999
Q ss_pred cCCCcccccccccccCCCcccEEEccCCccCCCchhhhcccccccEEecCCccccCcchhhhccCcCCcEEeccCCcccc
Q 036411 333 LNNNHFSGKMADGLLSSTLLDVLDVSNNKLSGDIPHWIGNFSVLWLLLMSENYLQGSIPVQLGNLESLEFIDISENGLSV 412 (487)
Q Consensus 333 l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~ 412 (487)
+++|.+.+..+..+..+++|++|++++|++++..+..+..+++|++|++++|.+.+..+..+..+++|+.|++++|+++.
T Consensus 92 L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~ 171 (272)
T 3rfs_A 92 LTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQS 171 (272)
T ss_dssp CTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCC
T ss_pred CCCCccCccChhHhcCCcCCCEEECCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCc
Confidence 99999987777778889999999999999987777788999999999999999987667778899999999999999875
Q ss_pred cccc-ccCCCcceEEEeeCcccCCcchHhhhccCcceEEeCCCCcccccCcccccccCceeEEeccCCccCCCCCC
Q 036411 413 SMVS-LSNLSSVKHIYLHNNAINGLIPIALLRSSTLLTLDLRDNKFFGRIPHQINELSNLHFLLLRGNSLQGRIPN 487 (487)
Q Consensus 413 ~~~~-~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~p~ 487 (487)
.... +..+++|+.|++++|.+++..+..+..+++|+.|++++|++. +.+|+|+.+++++|.+.|.+|.
T Consensus 172 ~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~-------~~~~~l~~l~~~~n~~~g~ip~ 240 (272)
T 3rfs_A 172 LPEGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWD-------CTCPGIRYLSEWINKHSGVVRN 240 (272)
T ss_dssp CCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBC-------CCTTTTHHHHHHHHHTGGGBBC
T ss_pred cCHHHhcCCccCCEEECCCCcCCccCHHHHhCCcCCCEEEccCCCcc-------ccCcHHHHHHHHHHhCCCcccC
Confidence 5444 468899999999999999888888888999999999999875 3467899999999999988874
|
| >3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} | Back alignment and structure |
|---|
Probab=99.87 E-value=1e-22 Score=190.48 Aligned_cols=234 Identities=18% Similarity=0.200 Sum_probs=132.8
Q ss_pred CCCCcEEEccCCcccccCCcc---cccccC-ceEEEEccCCCCCCCcchhhhcc-----ccCcEEecccccCCCCCchh-
Q 036411 227 YDKLRHLDISTNNFSGKLPEN---LGIVFQ-KLIYLDVSKNSFEGNIPYSISEM-----KELITLDLSRNNFSGELPRS- 296 (487)
Q Consensus 227 ~~~L~~L~l~~~~~~~~~~~~---~~~~~~-~L~~L~l~~~~~~~~~~~~~~~~-----~~L~~L~l~~~~~~~~~~~~- 296 (487)
.++|+.|++++|.+.+..+.. ....++ +|++|++++|.+.+..+..+..+ ++|+.|++++|.+.+..+..
T Consensus 21 ~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l 100 (362)
T 3goz_A 21 PHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNFLSYKSSDEL 100 (362)
T ss_dssp CTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHH
T ss_pred CCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCCcCChHHHHHH
Confidence 344777777777766433311 112234 67777777777765555555443 67777777777766333322
Q ss_pred --hhcCC-CCCcEEECCCCccCCCCCcCC----cC-CCCccEEEcCCCccccccc----ccccCCC-cccEEEccCCccC
Q 036411 297 --IFSSC-LSLETLDLSNNNFYGQLFPNF----MN-LTHLSSLRLNNNHFSGKMA----DGLLSST-LLDVLDVSNNKLS 363 (487)
Q Consensus 297 --~~~~~-~~L~~L~l~~~~~~~~~~~~~----~~-~~~L~~L~l~~~~~~~~~~----~~~~~~~-~L~~L~l~~~~~~ 363 (487)
.+..+ ++|++|++++|.+.+.....+ .. .++|++|++++|.++.... ..+...+ +|++|++++|+++
T Consensus 101 ~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~ 180 (362)
T 3goz_A 101 VKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNLA 180 (362)
T ss_dssp HHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGG
T ss_pred HHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHHHhcCCccccEeeecCCCCc
Confidence 12333 677777777777655443332 22 2467777777777663322 2223333 6777777777766
Q ss_pred CCchhhhc----cc-ccccEEecCCccccCc----chhhhcc-CcCCcEEeccCCccccc-----cccccCCCcceEEEe
Q 036411 364 GDIPHWIG----NF-SVLWLLLMSENYLQGS----IPVQLGN-LESLEFIDISENGLSVS-----MVSLSNLSSVKHIYL 428 (487)
Q Consensus 364 ~~~~~~~~----~~-~~L~~L~l~~~~~~~~----~~~~~~~-~~~L~~l~l~~~~~~~~-----~~~~~~~~~L~~L~l 428 (487)
+..+..+. .+ ++|++|++++|.+.+. .+..+.. .++|+.|++++|.+... ...+..+++|+.|++
T Consensus 181 ~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~~~~l~~L~~L~L 260 (362)
T 3goz_A 181 SKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQTVYL 260 (362)
T ss_dssp GSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSCCCCCCHHHHHHTTTTTTTCSEEEE
T ss_pred hhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCCCCCcHHHHHHHHHHhcCCCccEEEe
Confidence 55544333 33 4777777777766642 2333333 34677777777766421 122345666777777
Q ss_pred eCcccCCcchH-------hhhccCcceEEeCCCCccccc
Q 036411 429 HNNAINGLIPI-------ALLRSSTLLTLDLRDNKFFGR 460 (487)
Q Consensus 429 ~~~~~~~~~~~-------~~~~~~~L~~L~l~~~~~~~~ 460 (487)
++|.+....+. .+..+++|+.|++++|++.+.
T Consensus 261 ~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~l~~~ 299 (362)
T 3goz_A 261 DYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIHPS 299 (362)
T ss_dssp EHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSCBCCGG
T ss_pred ccCCccccCHHHHHHHHHHhccCCceEEEecCCCcCCCc
Confidence 77765443322 334556677777777766443
|
| >1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 | Back alignment and structure |
|---|
Probab=99.87 E-value=4.6e-21 Score=174.73 Aligned_cols=192 Identities=20% Similarity=0.312 Sum_probs=130.1
Q ss_pred cCceEEEEccCCCCCCCcchhhhccccCcEEecccccCCCCCchhhhcCCCCCcEEECCCCccCCCCCcCCcCCCCccEE
Q 036411 252 FQKLIYLDVSKNSFEGNIPYSISEMKELITLDLSRNNFSGELPRSIFSSCLSLETLDLSNNNFYGQLFPNFMNLTHLSSL 331 (487)
Q Consensus 252 ~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L 331 (487)
+++|++|+++++.+... + .+..+++|+.|++++|.+. .++. +..+++|++|++++|.+.+. +.+..+++|++|
T Consensus 40 l~~L~~L~l~~~~i~~l-~-~~~~l~~L~~L~L~~n~i~-~~~~--~~~l~~L~~L~L~~n~l~~~--~~~~~l~~L~~L 112 (308)
T 1h6u_A 40 LDGITTLSAFGTGVTTI-E-GVQYLNNLIGLELKDNQIT-DLAP--LKNLTKITELELSGNPLKNV--SAIAGLQSIKTL 112 (308)
T ss_dssp HHTCCEEECTTSCCCCC-T-TGGGCTTCCEEECCSSCCC-CCGG--GTTCCSCCEEECCSCCCSCC--GGGTTCTTCCEE
T ss_pred cCCcCEEEeeCCCccCc-h-hhhccCCCCEEEccCCcCC-CChh--HccCCCCCEEEccCCcCCCc--hhhcCCCCCCEE
Confidence 46777888887777632 2 4667777888888877776 5554 56777888888887777542 356677777777
Q ss_pred EcCCCcccccccccccCCCcccEEEccCCccCCCchhhhcccccccEEecCCccccCcchhhhccCcCCcEEeccCCccc
Q 036411 332 RLNNNHFSGKMADGLLSSTLLDVLDVSNNKLSGDIPHWIGNFSVLWLLLMSENYLQGSIPVQLGNLESLEFIDISENGLS 411 (487)
Q Consensus 332 ~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~ 411 (487)
++++|.+.+.. .+..+++|++|++++|++++..+ +..+++|++|++++|.+.+..+ +..+++|+.|++++|.+.
T Consensus 113 ~l~~n~l~~~~--~l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~ 186 (308)
T 1h6u_A 113 DLTSTQITDVT--PLAGLSNLQVLYLDLNQITNISP--LAGLTNLQYLSIGNAQVSDLTP--LANLSKLTTLKADDNKIS 186 (308)
T ss_dssp ECTTSCCCCCG--GGTTCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCC
T ss_pred ECCCCCCCCch--hhcCCCCCCEEECCCCccCcCcc--ccCCCCccEEEccCCcCCCChh--hcCCCCCCEEECCCCccC
Confidence 77777776432 26667777777777777764433 6677777777777777664322 666777777777777765
Q ss_pred cccccccCCCcceEEEeeCcccCCcchHhhhccCcceEEeCCCCcccc
Q 036411 412 VSMVSLSNLSSVKHIYLHNNAINGLIPIALLRSSTLLTLDLRDNKFFG 459 (487)
Q Consensus 412 ~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~ 459 (487)
.... +..+++|++|++++|.+++.. .+..+++|+.|++++|++++
T Consensus 187 ~~~~-l~~l~~L~~L~L~~N~l~~~~--~l~~l~~L~~L~l~~N~i~~ 231 (308)
T 1h6u_A 187 DISP-LASLPNLIEVHLKNNQISDVS--PLANTSNLFIVTLTNQTITN 231 (308)
T ss_dssp CCGG-GGGCTTCCEEECTTSCCCBCG--GGTTCTTCCEEEEEEEEEEC
T ss_pred cChh-hcCCCCCCEEEccCCccCccc--cccCCCCCCEEEccCCeeec
Confidence 4332 556677777777777776554 25666777777777777643
|
| >2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* | Back alignment and structure |
|---|
Probab=99.86 E-value=1.5e-21 Score=171.45 Aligned_cols=197 Identities=19% Similarity=0.239 Sum_probs=114.6
Q ss_pred cCcEEecccccCCCCCchhhhcCCCCCcEEECCCCc-cCCCCCcCCcCCCCccEEEcCC-CcccccccccccCCCcccEE
Q 036411 278 ELITLDLSRNNFSGELPRSIFSSCLSLETLDLSNNN-FYGQLFPNFMNLTHLSSLRLNN-NHFSGKMADGLLSSTLLDVL 355 (487)
Q Consensus 278 ~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~-~~~~~~~~~~~~~~L~~L~l~~-~~~~~~~~~~~~~~~~L~~L 355 (487)
+++.|++++|.+. .++...|.++++|++|++++|. +....+..|..+++|++|++++ |.+....+..+..+++|++|
T Consensus 32 ~l~~L~l~~n~l~-~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L 110 (239)
T 2xwt_C 32 STQTLKLIETHLR-TIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFL 110 (239)
T ss_dssp TCCEEEEESCCCS-EECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEE
T ss_pred cccEEEEeCCcce-EECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEE
Confidence 3444444444443 3333334444444444444443 3333333344444444444444 44443333444455555555
Q ss_pred EccCCccCCCchhhhccccccc---EEecCCc-cccCcchhhhccCcCCc-EEeccCCccccccccccCCCcceEEEeeC
Q 036411 356 DVSNNKLSGDIPHWIGNFSVLW---LLLMSEN-YLQGSIPVQLGNLESLE-FIDISENGLSVSMVSLSNLSSVKHIYLHN 430 (487)
Q Consensus 356 ~l~~~~~~~~~~~~~~~~~~L~---~L~l~~~-~~~~~~~~~~~~~~~L~-~l~l~~~~~~~~~~~~~~~~~L~~L~l~~ 430 (487)
++++|++++ +|. +..+++|+ +|++++| .+....+..|..+++|+ .|++++|+++..+......++|++|++++
T Consensus 111 ~l~~n~l~~-lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~~i~~~~~~~~~L~~L~L~~ 188 (239)
T 2xwt_C 111 GIFNTGLKM-FPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTSVQGYAFNGTKLDAVYLNK 188 (239)
T ss_dssp EEEEECCCS-CCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCCEECTTTTTTCEEEEEECTT
T ss_pred eCCCCCCcc-ccc-cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCcccCHhhcCCCCCCEEEcCC
Confidence 555555543 333 55555555 6667666 66544445567777777 77777777764444433347888888888
Q ss_pred cc-cCCcchHhhhcc-CcceEEeCCCCcccccCcccccccCceeEEeccCCc
Q 036411 431 NA-INGLIPIALLRS-STLLTLDLRDNKFFGRIPHQINELSNLHFLLLRGNS 480 (487)
Q Consensus 431 ~~-~~~~~~~~~~~~-~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~ 480 (487)
|. ++...+.++..+ ++|+.|++++|+++. +|.. .+++|+.|++++++
T Consensus 189 n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~~-l~~~--~~~~L~~L~l~~~~ 237 (239)
T 2xwt_C 189 NKYLTVIDKDAFGGVYSGPSLLDVSQTSVTA-LPSK--GLEHLKELIARNTW 237 (239)
T ss_dssp CTTCCEECTTTTTTCSBCCSEEECTTCCCCC-CCCT--TCTTCSEEECTTC-
T ss_pred CCCcccCCHHHhhccccCCcEEECCCCcccc-CChh--HhccCceeeccCcc
Confidence 84 777667778888 888888888888864 3333 67788888888775
|
| >2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A | Back alignment and structure |
|---|
Probab=99.86 E-value=3.7e-22 Score=185.21 Aligned_cols=201 Identities=17% Similarity=0.197 Sum_probs=89.7
Q ss_pred CCCcEEEccCCcccccCCcccccccCceEEEEccCCCCCCC-cchhhhccccCcEEecccccCCCCCchhhhcCCCCCcE
Q 036411 228 DKLRHLDISTNNFSGKLPENLGIVFQKLIYLDVSKNSFEGN-IPYSISEMKELITLDLSRNNFSGELPRSIFSSCLSLET 306 (487)
Q Consensus 228 ~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~-~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~ 306 (487)
++++.+++.++.+.+..+. .+ .+++|++|++++|.+.+. .+..+..+++|+.|++++|.+.+..+. .+..+++|++
T Consensus 70 ~~l~~L~l~~n~l~~~~~~-~~-~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~-~l~~~~~L~~ 146 (336)
T 2ast_B 70 QGVIAFRCPRSFMDQPLAE-HF-SPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVN-TLAKNSNLVR 146 (336)
T ss_dssp TTCSEEECTTCEECSCCCS-CC-CCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHH-HHTTCTTCSE
T ss_pred ccceEEEcCCccccccchh-hc-cCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcccCHHHHH-HHhcCCCCCE
Confidence 4555555555555433222 11 234555555555554432 334445555555555555554422222 2344555555
Q ss_pred EECCCC-ccCCC-CCcCCcCCCCccEEEcCCC-ccccc-ccccccCCC-cccEEEccCCc--cC-CCchhhhcccccccE
Q 036411 307 LDLSNN-NFYGQ-LFPNFMNLTHLSSLRLNNN-HFSGK-MADGLLSST-LLDVLDVSNNK--LS-GDIPHWIGNFSVLWL 378 (487)
Q Consensus 307 L~l~~~-~~~~~-~~~~~~~~~~L~~L~l~~~-~~~~~-~~~~~~~~~-~L~~L~l~~~~--~~-~~~~~~~~~~~~L~~ 378 (487)
|++++| .+.+. .+..+..+++|++|++++| .+++. .+..+..++ +|++|++++|. ++ ..++..+..+++|++
T Consensus 147 L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~ 226 (336)
T 2ast_B 147 LNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVH 226 (336)
T ss_dssp EECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSE
T ss_pred EECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCE
Confidence 555555 23221 2222334455555555555 44322 233334444 55555555552 22 223344444555555
Q ss_pred EecCCcc-ccCcchhhhccCcCCcEEeccCCc-cc-cccccccCCCcceEEEeeCc
Q 036411 379 LLMSENY-LQGSIPVQLGNLESLEFIDISENG-LS-VSMVSLSNLSSVKHIYLHNN 431 (487)
Q Consensus 379 L~l~~~~-~~~~~~~~~~~~~~L~~l~l~~~~-~~-~~~~~~~~~~~L~~L~l~~~ 431 (487)
|++++|. +++..+..+..+++|+.|++++|. +. .....+..+++|++|++++|
T Consensus 227 L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~ 282 (336)
T 2ast_B 227 LDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI 282 (336)
T ss_dssp EECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS
T ss_pred EeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCCCCCHHHHHHHhcCCCCCEEeccCc
Confidence 5555554 333334444444555555555553 11 01112334455555555544
|
| >1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A | Back alignment and structure |
|---|
Probab=99.86 E-value=1.8e-20 Score=169.05 Aligned_cols=203 Identities=22% Similarity=0.198 Sum_probs=146.3
Q ss_pred cCCCCCcEEEccCCcccccCCcccccccCceEEEEccCCCCCCCcchhhhccccCcEEecccccCCCCCchhhhcCCCCC
Q 036411 225 AKYDKLRHLDISTNNFSGKLPENLGIVFQKLIYLDVSKNSFEGNIPYSISEMKELITLDLSRNNFSGELPRSIFSSCLSL 304 (487)
Q Consensus 225 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L 304 (487)
..+++++.+++.++.+. .+|..+ ++.++.|++++|.+.+..+..+..+++|+.|++++|.+. .++.. ..+++|
T Consensus 7 ~~l~~l~~l~~~~~~l~-~ip~~~---~~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~--~~l~~L 79 (290)
T 1p9a_G 7 SKVASHLEVNCDKRNLT-ALPPDL---PKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELT-KLQVD--GTLPVL 79 (290)
T ss_dssp ECSTTCCEEECTTSCCS-SCCSCC---CTTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCC-EEECC--SCCTTC
T ss_pred cccCCccEEECCCCCCC-cCCCCC---CCCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccC-cccCC--CCCCcC
Confidence 44566677777766665 455444 356777777777776555666777777788888777776 45442 567778
Q ss_pred cEEECCCCccCCCCCcCCcCCCCccEEEcCCCcccccccccccCCCcccEEEccCCccCCCchhhhcccccccEEecCCc
Q 036411 305 ETLDLSNNNFYGQLFPNFMNLTHLSSLRLNNNHFSGKMADGLLSSTLLDVLDVSNNKLSGDIPHWIGNFSVLWLLLMSEN 384 (487)
Q Consensus 305 ~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~ 384 (487)
++|++++|.+. ..+..+..+++|+.|++++|.+++..+..+..+++|++|++++|++++..+..+..+++|+.|++++|
T Consensus 80 ~~L~Ls~N~l~-~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N 158 (290)
T 1p9a_G 80 GTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANN 158 (290)
T ss_dssp CEEECCSSCCS-SCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTS
T ss_pred CEEECCCCcCC-cCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECCCC
Confidence 88888877776 34455667778888888888777666666777788888888888877666666777888888888888
Q ss_pred cccCcchhhhccCcCCcEEeccCCccccccccccCCCcceEEEeeCcccCC
Q 036411 385 YLQGSIPVQLGNLESLEFIDISENGLSVSMVSLSNLSSVKHIYLHNNAING 435 (487)
Q Consensus 385 ~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~ 435 (487)
+++...+..+..+++|+.|++++|+++..+..+...++|+.+++.+|.+..
T Consensus 159 ~l~~l~~~~~~~l~~L~~L~L~~N~l~~ip~~~~~~~~L~~l~L~~Np~~C 209 (290)
T 1p9a_G 159 NLTELPAGLLNGLENLDTLLLQENSLYTIPKGFFGSHLLPFAFLHGNPWLC 209 (290)
T ss_dssp CCSCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCCCSEEECCSCCBCC
T ss_pred cCCccCHHHhcCcCCCCEEECCCCcCCccChhhcccccCCeEEeCCCCccC
Confidence 877555556677788888888888887777777777788888888887764
|
| >3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A | Back alignment and structure |
|---|
Probab=99.85 E-value=3.9e-20 Score=163.60 Aligned_cols=180 Identities=22% Similarity=0.219 Sum_probs=140.1
Q ss_pred ccCcEEecccccCCCCCchhhhcCCCCCcEEECCCCccCCCCCcCCcCCCCccEEEcCCCcccccccccccCCCcccEEE
Q 036411 277 KELITLDLSRNNFSGELPRSIFSSCLSLETLDLSNNNFYGQLFPNFMNLTHLSSLRLNNNHFSGKMADGLLSSTLLDVLD 356 (487)
Q Consensus 277 ~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~ 356 (487)
...+.++++++.+. .+|..+ .++++.|++++|.+.+..+..+..+++|++|++++|.+.+..+..+..+++|+.|+
T Consensus 14 ~~~~~l~~~~~~l~-~~p~~~---~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 89 (251)
T 3m19_A 14 EGKKEVDCQGKSLD-SVPSGI---PADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLG 89 (251)
T ss_dssp GGGTEEECTTCCCS-SCCSCC---CTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEE
T ss_pred CCCeEEecCCCCcc-ccCCCC---CCCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEE
Confidence 45678888888887 777654 36888999998888877777788888888888888888877777777888888888
Q ss_pred ccCCccCCCchhhhcccccccEEecCCccccCcchhhhccCcCCcEEeccCCccccccc-cccCCCcceEEEeeCcccCC
Q 036411 357 VSNNKLSGDIPHWIGNFSVLWLLLMSENYLQGSIPVQLGNLESLEFIDISENGLSVSMV-SLSNLSSVKHIYLHNNAING 435 (487)
Q Consensus 357 l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~-~~~~~~~L~~L~l~~~~~~~ 435 (487)
+++|++++..+..+..+++|++|++++|.+....+..+..+++|+.|++++|+++.... .+..+++|++|++++|.+++
T Consensus 90 L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~ 169 (251)
T 3m19_A 90 LANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQS 169 (251)
T ss_dssp CTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSC
T ss_pred CCCCcccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCCc
Confidence 88888887777777888888888888888876555567777888888888887765554 46677788888888888777
Q ss_pred cchHhhhccCcceEEeCCCCccccc
Q 036411 436 LIPIALLRSSTLLTLDLRDNKFFGR 460 (487)
Q Consensus 436 ~~~~~~~~~~~L~~L~l~~~~~~~~ 460 (487)
..+..+..+++|+.|++++|++.+.
T Consensus 170 ~~~~~~~~l~~L~~L~l~~N~~~c~ 194 (251)
T 3m19_A 170 VPHGAFDRLGKLQTITLFGNQFDCS 194 (251)
T ss_dssp CCTTTTTTCTTCCEEECCSCCBCTT
T ss_pred cCHHHHhCCCCCCEEEeeCCceeCC
Confidence 7666777777888888888877543
|
| >2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A | Back alignment and structure |
|---|
Probab=99.84 E-value=2.8e-21 Score=179.33 Aligned_cols=251 Identities=19% Similarity=0.189 Sum_probs=194.1
Q ss_pred CCcEEEccCCcccccCCcccccc-cCceEEEEccCCCCCCCcchhhhccccCcEEecccccCCCCCchhhhcCCCCCcEE
Q 036411 229 KLRHLDISTNNFSGKLPENLGIV-FQKLIYLDVSKNSFEGNIPYSISEMKELITLDLSRNNFSGELPRSIFSSCLSLETL 307 (487)
Q Consensus 229 ~L~~L~l~~~~~~~~~~~~~~~~-~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L 307 (487)
.++.++++++.+.+ ..+... .+.++.++++++.+.+..+. +..+++|+.|++++|.+.+......+..+++|++|
T Consensus 48 ~~~~l~l~~~~~~~---~~~~~~~~~~l~~L~l~~n~l~~~~~~-~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L 123 (336)
T 2ast_B 48 LWQTLDLTGKNLHP---DVTGRLLSQGVIAFRCPRSFMDQPLAE-HFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNL 123 (336)
T ss_dssp TSSEEECTTCBCCH---HHHHHHHHTTCSEEECTTCEECSCCCS-CCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEE
T ss_pred hheeeccccccCCH---HHHHhhhhccceEEEcCCccccccchh-hccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEE
Confidence 47899999887652 222211 27899999999998865544 55789999999999998744234456889999999
Q ss_pred ECCCCccCCCCCcCCcCCCCccEEEcCCC-ccccc-ccccccCCCcccEEEccCC-ccCCC-chhhhcccc-cccEEecC
Q 036411 308 DLSNNNFYGQLFPNFMNLTHLSSLRLNNN-HFSGK-MADGLLSSTLLDVLDVSNN-KLSGD-IPHWIGNFS-VLWLLLMS 382 (487)
Q Consensus 308 ~l~~~~~~~~~~~~~~~~~~L~~L~l~~~-~~~~~-~~~~~~~~~~L~~L~l~~~-~~~~~-~~~~~~~~~-~L~~L~l~ 382 (487)
++++|.+.+..+..+..+++|++|++++| .+++. .+..+..+++|++|++++| .+++. .+..+..++ +|++|+++
T Consensus 124 ~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~ 203 (336)
T 2ast_B 124 SLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLS 203 (336)
T ss_dssp ECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECC
T ss_pred eCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeC
Confidence 99999887666677888999999999999 56642 4555778999999999999 88754 577788999 99999999
Q ss_pred Ccc--cc-CcchhhhccCcCCcEEeccCCc-cc-cccccccCCCcceEEEeeCcc-cCCcchHhhhccCcceEEeCCCCc
Q 036411 383 ENY--LQ-GSIPVQLGNLESLEFIDISENG-LS-VSMVSLSNLSSVKHIYLHNNA-INGLIPIALLRSSTLLTLDLRDNK 456 (487)
Q Consensus 383 ~~~--~~-~~~~~~~~~~~~L~~l~l~~~~-~~-~~~~~~~~~~~L~~L~l~~~~-~~~~~~~~~~~~~~L~~L~l~~~~ 456 (487)
+|. ++ ...+..+..+++|+.|++++|. ++ .....+..+++|++|++++|. +.......+..+++|+.|++++|
T Consensus 204 ~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~- 282 (336)
T 2ast_B 204 GYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI- 282 (336)
T ss_dssp SCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS-
T ss_pred CCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCCCCCHHHHHHHhcCCCCCEEeccCc-
Confidence 994 44 3456677889999999999999 43 456677788999999999995 33222236788999999999999
Q ss_pred ccccCcccccccC-ceeEEeccCCccCCCCCC
Q 036411 457 FFGRIPHQINELS-NLHFLLLRGNSLQGRIPN 487 (487)
Q Consensus 457 ~~~~~~~~l~~l~-~L~~L~l~~~~~~~~~p~ 487 (487)
++.. .+..+. +++.|++++|.+++..|.
T Consensus 283 i~~~---~~~~l~~~l~~L~l~~n~l~~~~~~ 311 (336)
T 2ast_B 283 VPDG---TLQLLKEALPHLQINCSHFTTIARP 311 (336)
T ss_dssp SCTT---CHHHHHHHSTTSEESCCCSCCTTCS
T ss_pred cCHH---HHHHHHhhCcceEEecccCccccCC
Confidence 5433 344432 356666899999998874
|
| >4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.84 E-value=2.6e-21 Score=176.95 Aligned_cols=201 Identities=21% Similarity=0.231 Sum_probs=111.6
Q ss_pred ccCcEEecccccCCCCCchhhh-cCCCCCcEEECCCCccCCCCC----cCCcCCCCccEEEcCCCcccccccccccCCCc
Q 036411 277 KELITLDLSRNNFSGELPRSIF-SSCLSLETLDLSNNNFYGQLF----PNFMNLTHLSSLRLNNNHFSGKMADGLLSSTL 351 (487)
Q Consensus 277 ~~L~~L~l~~~~~~~~~~~~~~-~~~~~L~~L~l~~~~~~~~~~----~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~ 351 (487)
++|++|++++|.+.+..+...+ ..+++|++|++++|.+.+..+ ..+..+++|++|++++|.+.+..+..+..+++
T Consensus 91 ~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~ 170 (310)
T 4glp_A 91 SRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRAFPA 170 (310)
T ss_dssp SCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCCCCTT
T ss_pred CceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhccCCC
Confidence 3344455544444433333322 344445555555554443221 11223455555555555554444444555555
Q ss_pred ccEEEccCCccCCC--c--hhhhcccccccEEecCCccccCcchh----hhccCcCCcEEeccCCccccc-cccccCC--
Q 036411 352 LDVLDVSNNKLSGD--I--PHWIGNFSVLWLLLMSENYLQGSIPV----QLGNLESLEFIDISENGLSVS-MVSLSNL-- 420 (487)
Q Consensus 352 L~~L~l~~~~~~~~--~--~~~~~~~~~L~~L~l~~~~~~~~~~~----~~~~~~~L~~l~l~~~~~~~~-~~~~~~~-- 420 (487)
|++|++++|++.+. . +..+..+++|++|++++|.++. .+. .+..+++|+.|++++|.+... +..+..+
T Consensus 171 L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~-l~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~ 249 (310)
T 4glp_A 171 LTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMET-PTGVCAALAAAGVQPHSLDLSHNSLRATVNPSAPRCMW 249 (310)
T ss_dssp CCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCC-HHHHHHHHHHHTCCCSSEECTTSCCCCCCCSCCSSCCC
T ss_pred CCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCc-hHHHHHHHHhcCCCCCEEECCCCCCCccchhhHHhccC
Confidence 55555555554321 1 1122455666666666666542 222 235566777777777766543 3333333
Q ss_pred -CcceEEEeeCcccCCcchHhhhccCcceEEeCCCCcccccCcccccccCceeEEeccCCccCC
Q 036411 421 -SSVKHIYLHNNAINGLIPIALLRSSTLLTLDLRDNKFFGRIPHQINELSNLHFLLLRGNSLQG 483 (487)
Q Consensus 421 -~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~ 483 (487)
++|++|++++|.++.. |..+. ++|+.|++++|++++. |. +..+++|+.|++++|++..
T Consensus 250 ~~~L~~L~Ls~N~l~~l-p~~~~--~~L~~L~Ls~N~l~~~-~~-~~~l~~L~~L~L~~N~l~~ 308 (310)
T 4glp_A 250 SSALNSLNLSFAGLEQV-PKGLP--AKLRVLDLSSNRLNRA-PQ-PDELPEVDNLTLDGNPFLV 308 (310)
T ss_dssp CTTCCCEECCSSCCCSC-CSCCC--SCCSCEECCSCCCCSC-CC-TTSCCCCSCEECSSTTTSC
T ss_pred cCcCCEEECCCCCCCch-hhhhc--CCCCEEECCCCcCCCC-ch-hhhCCCccEEECcCCCCCC
Confidence 6788888888888754 44443 7888888888888643 33 6788889999999998864
|
| >1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 | Back alignment and structure |
|---|
Probab=99.84 E-value=5.1e-20 Score=167.85 Aligned_cols=195 Identities=24% Similarity=0.334 Sum_probs=162.4
Q ss_pred cCCCCCcEEEccCCcccccCCcccccccCceEEEEccCCCCCCCcchhhhccccCcEEecccccCCCCCchhhhcCCCCC
Q 036411 225 AKYDKLRHLDISTNNFSGKLPENLGIVFQKLIYLDVSKNSFEGNIPYSISEMKELITLDLSRNNFSGELPRSIFSSCLSL 304 (487)
Q Consensus 225 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L 304 (487)
..+++|+.|++.++.+. .++ .+ ..+++|++|++++|.+.+..+ +..+++|+.|++++|.+. .++. +..+++|
T Consensus 38 ~~l~~L~~L~l~~~~i~-~l~-~~-~~l~~L~~L~L~~n~i~~~~~--~~~l~~L~~L~L~~n~l~-~~~~--~~~l~~L 109 (308)
T 1h6u_A 38 ADLDGITTLSAFGTGVT-TIE-GV-QYLNNLIGLELKDNQITDLAP--LKNLTKITELELSGNPLK-NVSA--IAGLQSI 109 (308)
T ss_dssp HHHHTCCEEECTTSCCC-CCT-TG-GGCTTCCEEECCSSCCCCCGG--GTTCCSCCEEECCSCCCS-CCGG--GTTCTTC
T ss_pred HHcCCcCEEEeeCCCcc-Cch-hh-hccCCCCEEEccCCcCCCChh--HccCCCCCEEEccCCcCC-Cchh--hcCCCCC
Confidence 56788999999999887 344 23 346899999999999885544 888999999999999987 5653 6889999
Q ss_pred cEEECCCCccCCCCCcCCcCCCCccEEEcCCCcccccccccccCCCcccEEEccCCccCCCchhhhcccccccEEecCCc
Q 036411 305 ETLDLSNNNFYGQLFPNFMNLTHLSSLRLNNNHFSGKMADGLLSSTLLDVLDVSNNKLSGDIPHWIGNFSVLWLLLMSEN 384 (487)
Q Consensus 305 ~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~ 384 (487)
++|++++|.+.+. ..+..+++|+.|++++|.+.+... +..+++|+.|++++|++++..+ +..+++|++|++++|
T Consensus 110 ~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n 183 (308)
T 1h6u_A 110 KTLDLTSTQITDV--TPLAGLSNLQVLYLDLNQITNISP--LAGLTNLQYLSIGNAQVSDLTP--LANLSKLTTLKADDN 183 (308)
T ss_dssp CEEECTTSCCCCC--GGGTTCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSS
T ss_pred CEEECCCCCCCCc--hhhcCCCCCCEEECCCCccCcCcc--ccCCCCccEEEccCCcCCCChh--hcCCCCCCEEECCCC
Confidence 9999999998763 348889999999999999875433 7788999999999999986544 889999999999999
Q ss_pred cccCcchhhhccCcCCcEEeccCCccccccccccCCCcceEEEeeCcccCCc
Q 036411 385 YLQGSIPVQLGNLESLEFIDISENGLSVSMVSLSNLSSVKHIYLHNNAINGL 436 (487)
Q Consensus 385 ~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~ 436 (487)
.+.+..+ +..+++|+.|++++|++.... .+..+++|+.|++++|.++..
T Consensus 184 ~l~~~~~--l~~l~~L~~L~L~~N~l~~~~-~l~~l~~L~~L~l~~N~i~~~ 232 (308)
T 1h6u_A 184 KISDISP--LASLPNLIEVHLKNNQISDVS-PLANTSNLFIVTLTNQTITNQ 232 (308)
T ss_dssp CCCCCGG--GGGCTTCCEEECTTSCCCBCG-GGTTCTTCCEEEEEEEEEECC
T ss_pred ccCcChh--hcCCCCCCEEEccCCccCccc-cccCCCCCCEEEccCCeeecC
Confidence 9885433 788999999999999997555 477899999999999998864
|
| >4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.84 E-value=2e-20 Score=171.09 Aligned_cols=227 Identities=17% Similarity=0.141 Sum_probs=178.7
Q ss_pred CCCcEEEccCCcccccCCcccc--cccCceEEEEccCCCCCCCcchhh--hccccCcEEecccccCCCCCc---hhhhcC
Q 036411 228 DKLRHLDISTNNFSGKLPENLG--IVFQKLIYLDVSKNSFEGNIPYSI--SEMKELITLDLSRNNFSGELP---RSIFSS 300 (487)
Q Consensus 228 ~~L~~L~l~~~~~~~~~~~~~~--~~~~~L~~L~l~~~~~~~~~~~~~--~~~~~L~~L~l~~~~~~~~~~---~~~~~~ 300 (487)
..++.+.+..+.+.+.....+. ...++|++|++++|.+.+..+..+ ..+++|+.|++++|.+.+..+ ...+..
T Consensus 64 ~~l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~ 143 (310)
T 4glp_A 64 LRVRRLTVGAAQVPAQLLVGALRVLAYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWL 143 (310)
T ss_dssp CCCCEEEECSCCCBHHHHHHHHHHHHHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTB
T ss_pred cceeEEEEeCCcCCHHHHHHHHHhcccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhh
Confidence 3477888887765432211111 123579999999999987777776 889999999999999985443 233457
Q ss_pred CCCCcEEECCCCccCCCCCcCCcCCCCccEEEcCCCccccc--c--cccccCCCcccEEEccCCccCCCchh----hhcc
Q 036411 301 CLSLETLDLSNNNFYGQLFPNFMNLTHLSSLRLNNNHFSGK--M--ADGLLSSTLLDVLDVSNNKLSGDIPH----WIGN 372 (487)
Q Consensus 301 ~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~--~--~~~~~~~~~L~~L~l~~~~~~~~~~~----~~~~ 372 (487)
+++|++|++++|.+.+..+..+..+++|++|++++|.+.+. . ...+..+++|++|++++|+++. .+. .++.
T Consensus 144 ~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~-l~~~~~~l~~~ 222 (310)
T 4glp_A 144 KPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMET-PTGVCAALAAA 222 (310)
T ss_dssp CSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCC-HHHHHHHHHHH
T ss_pred ccCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCc-hHHHHHHHHhc
Confidence 89999999999999888888899999999999999987542 1 2334678899999999999863 333 3578
Q ss_pred cccccEEecCCccccCcchhhhccC---cCCcEEeccCCccccccccccCCCcceEEEeeCcccCCcchHhhhccCcceE
Q 036411 373 FSVLWLLLMSENYLQGSIPVQLGNL---ESLEFIDISENGLSVSMVSLSNLSSVKHIYLHNNAINGLIPIALLRSSTLLT 449 (487)
Q Consensus 373 ~~~L~~L~l~~~~~~~~~~~~~~~~---~~L~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~ 449 (487)
+++|++|++++|.+.+..|..+..+ ++|+.|++++|+++..+..+. ++|++|++++|++++. +. +..+++|+.
T Consensus 223 l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~--~~L~~L~Ls~N~l~~~-~~-~~~l~~L~~ 298 (310)
T 4glp_A 223 GVQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLEQVPKGLP--AKLRVLDLSSNRLNRA-PQ-PDELPEVDN 298 (310)
T ss_dssp TCCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCCSCCSCCC--SCCSCEECCSCCCCSC-CC-TTSCCCCSC
T ss_pred CCCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCCchhhhhc--CCCCEEECCCCcCCCC-ch-hhhCCCccE
Confidence 8999999999999987767666665 799999999999986666553 8999999999999975 32 577899999
Q ss_pred EeCCCCcccc
Q 036411 450 LDLRDNKFFG 459 (487)
Q Consensus 450 L~l~~~~~~~ 459 (487)
|++++|++++
T Consensus 299 L~L~~N~l~~ 308 (310)
T 4glp_A 299 LTLDGNPFLV 308 (310)
T ss_dssp EECSSTTTSC
T ss_pred EECcCCCCCC
Confidence 9999999864
|
| >3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A | Back alignment and structure |
|---|
Probab=99.83 E-value=1.6e-19 Score=159.59 Aligned_cols=180 Identities=23% Similarity=0.249 Sum_probs=156.8
Q ss_pred CceEEEEccCCCCCCCcchhhhccccCcEEecccccCCCCCchhhhcCCCCCcEEECCCCccCCCCCcCCcCCCCccEEE
Q 036411 253 QKLIYLDVSKNSFEGNIPYSISEMKELITLDLSRNNFSGELPRSIFSSCLSLETLDLSNNNFYGQLFPNFMNLTHLSSLR 332 (487)
Q Consensus 253 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~ 332 (487)
...++++++++.+. .++..+. ++++.|++++|.+. .++...|.++++|++|++++|.+.+..+..+..+++|+.|+
T Consensus 14 ~~~~~l~~~~~~l~-~~p~~~~--~~l~~L~L~~n~l~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 89 (251)
T 3m19_A 14 EGKKEVDCQGKSLD-SVPSGIP--ADTEKLDLQSTGLA-TLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLG 89 (251)
T ss_dssp GGGTEEECTTCCCS-SCCSCCC--TTCCEEECTTSCCC-CCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEE
T ss_pred CCCeEEecCCCCcc-ccCCCCC--CCCCEEEccCCCcC-ccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEE
Confidence 46778999999887 4554443 68999999999998 66666688999999999999999887777889999999999
Q ss_pred cCCCcccccccccccCCCcccEEEccCCccCCCchhhhcccccccEEecCCccccCcchhhhccCcCCcEEeccCCcccc
Q 036411 333 LNNNHFSGKMADGLLSSTLLDVLDVSNNKLSGDIPHWIGNFSVLWLLLMSENYLQGSIPVQLGNLESLEFIDISENGLSV 412 (487)
Q Consensus 333 l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~ 412 (487)
+++|.+.+..+..+..+++|++|++++|++++..+..+..+++|++|++++|.+....+..+..+++|+.|++++|++..
T Consensus 90 L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~ 169 (251)
T 3m19_A 90 LANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQS 169 (251)
T ss_dssp CTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSC
T ss_pred CCCCcccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCCc
Confidence 99999997777788899999999999999997777788999999999999999997666688999999999999999975
Q ss_pred ccc-cccCCCcceEEEeeCcccCCc
Q 036411 413 SMV-SLSNLSSVKHIYLHNNAINGL 436 (487)
Q Consensus 413 ~~~-~~~~~~~L~~L~l~~~~~~~~ 436 (487)
... .+..+++|+.|++.+|.+...
T Consensus 170 ~~~~~~~~l~~L~~L~l~~N~~~c~ 194 (251)
T 3m19_A 170 VPHGAFDRLGKLQTITLFGNQFDCS 194 (251)
T ss_dssp CCTTTTTTCTTCCEEECCSCCBCTT
T ss_pred cCHHHHhCCCCCCEEEeeCCceeCC
Confidence 554 566899999999999999865
|
| >2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* | Back alignment and structure |
|---|
Probab=99.83 E-value=2.4e-20 Score=163.76 Aligned_cols=197 Identities=14% Similarity=0.121 Sum_probs=135.2
Q ss_pred CceEEEEccCCCCCCCcchhhhccccCcEEeccccc-CCCCCchhhhcCCCCCcEEECCC-CccCCCCCcCCcCCCCccE
Q 036411 253 QKLIYLDVSKNSFEGNIPYSISEMKELITLDLSRNN-FSGELPRSIFSSCLSLETLDLSN-NNFYGQLFPNFMNLTHLSS 330 (487)
Q Consensus 253 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~-~~~~~~~~~~~~~~~L~~L~l~~-~~~~~~~~~~~~~~~~L~~ 330 (487)
+++++|++++|.+++..+..+..+++|+.|++++|. +. .++...|.++++|++|++++ |.+.+..+..|..+++|+.
T Consensus 31 ~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~-~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~ 109 (239)
T 2xwt_C 31 PSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQ-QLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKF 109 (239)
T ss_dssp TTCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCC-EECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCE
T ss_pred CcccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcc-eeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCE
Confidence 467777777777765545566677777777777775 55 66666667777777777776 6666555556667777777
Q ss_pred EEcCCCcccccccccccCCCccc---EEEccCC-ccCCCchhhhccccccc-EEecCCccccCcchhhhccCcCCcEEec
Q 036411 331 LRLNNNHFSGKMADGLLSSTLLD---VLDVSNN-KLSGDIPHWIGNFSVLW-LLLMSENYLQGSIPVQLGNLESLEFIDI 405 (487)
Q Consensus 331 L~l~~~~~~~~~~~~~~~~~~L~---~L~l~~~-~~~~~~~~~~~~~~~L~-~L~l~~~~~~~~~~~~~~~~~~L~~l~l 405 (487)
|++++|.+.+ .+. +..+++|+ .|++++| .+.+..+..+..+++|+ +|++++|.+....+..+.. ++|+.|++
T Consensus 110 L~l~~n~l~~-lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~~i~~~~~~~-~~L~~L~L 186 (239)
T 2xwt_C 110 LGIFNTGLKM-FPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTSVQGYAFNG-TKLDAVYL 186 (239)
T ss_dssp EEEEEECCCS-CCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCCEECTTTTTT-CEEEEEEC
T ss_pred EeCCCCCCcc-ccc-cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCcccCHhhcCC-CCCCEEEc
Confidence 7777777664 333 56666666 8888887 77655556677788888 8888888777333333444 77888888
Q ss_pred cCCc-cccc-cccccCC-CcceEEEeeCcccCCcchHhhhccCcceEEeCCCCc
Q 036411 406 SENG-LSVS-MVSLSNL-SSVKHIYLHNNAINGLIPIALLRSSTLLTLDLRDNK 456 (487)
Q Consensus 406 ~~~~-~~~~-~~~~~~~-~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 456 (487)
++|+ ++.. ...+..+ ++|++|++++|+++...+. .+++|+.|+++++.
T Consensus 187 ~~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~~l~~~---~~~~L~~L~l~~~~ 237 (239)
T 2xwt_C 187 NKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVTALPSK---GLEHLKELIARNTW 237 (239)
T ss_dssp TTCTTCCEECTTTTTTCSBCCSEEECTTCCCCCCCCT---TCTTCSEEECTTC-
T ss_pred CCCCCcccCCHHHhhccccCCcEEECCCCccccCChh---HhccCceeeccCcc
Confidence 8884 6544 3445677 8888888888888765544 45678888887764
|
| >3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} | Back alignment and structure |
|---|
Probab=99.82 E-value=1.1e-20 Score=176.69 Aligned_cols=251 Identities=16% Similarity=0.145 Sum_probs=189.7
Q ss_pred EEccCCcccccCCcccccccCceEEEEccCCCCCCCcc----hhhhccc-cCcEEecccccCCCCCchhhhcCC-----C
Q 036411 233 LDISTNNFSGKLPENLGIVFQKLIYLDVSKNSFEGNIP----YSISEMK-ELITLDLSRNNFSGELPRSIFSSC-----L 302 (487)
Q Consensus 233 L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~----~~~~~~~-~L~~L~l~~~~~~~~~~~~~~~~~-----~ 302 (487)
+.++.+.+++.++... ..+++|++|++++|.+.+... ..+..++ +|+.|++++|.+.+..+. .+..+ +
T Consensus 3 ~~ls~n~~~~~~~~~~-~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~-~l~~~l~~~~~ 80 (362)
T 3goz_A 3 YKLTLHPGSNPVEEFT-SIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSD-ELVQILAAIPA 80 (362)
T ss_dssp EECCCCTTCCHHHHHH-TSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHH-HHHHHHHTSCT
T ss_pred cccccccchHHHHHHH-hCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHH-HHHHHHhccCC
Confidence 4667777765444433 345679999999999986665 6777888 899999999999844333 33333 8
Q ss_pred CCcEEECCCCccCCCCCcC----CcCC-CCccEEEcCCCcccccccccc----cC-CCcccEEEccCCccCCCchh----
Q 036411 303 SLETLDLSNNNFYGQLFPN----FMNL-THLSSLRLNNNHFSGKMADGL----LS-STLLDVLDVSNNKLSGDIPH---- 368 (487)
Q Consensus 303 ~L~~L~l~~~~~~~~~~~~----~~~~-~~L~~L~l~~~~~~~~~~~~~----~~-~~~L~~L~l~~~~~~~~~~~---- 368 (487)
+|++|++++|.+.+..+.. +..+ ++|++|++++|.+++.....+ .. +++|++|++++|++++..+.
T Consensus 81 ~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~ 160 (362)
T 3goz_A 81 NVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQ 160 (362)
T ss_dssp TCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHH
T ss_pred CccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHH
Confidence 9999999999987655553 3344 899999999999986555443 33 46999999999998864443
Q ss_pred hhcccc-cccEEecCCccccCcchhhh----ccC-cCCcEEeccCCcccc-----ccccccC-CCcceEEEeeCcccCCc
Q 036411 369 WIGNFS-VLWLLLMSENYLQGSIPVQL----GNL-ESLEFIDISENGLSV-----SMVSLSN-LSSVKHIYLHNNAINGL 436 (487)
Q Consensus 369 ~~~~~~-~L~~L~l~~~~~~~~~~~~~----~~~-~~L~~l~l~~~~~~~-----~~~~~~~-~~~L~~L~l~~~~~~~~ 436 (487)
.+...+ +|++|++++|.+.+..+..+ ..+ ++|+.|++++|.+.. ....+.. .++|++|++++|.+++.
T Consensus 161 ~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~ 240 (362)
T 3goz_A 161 ILAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGP 240 (362)
T ss_dssp HHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSCCCCC
T ss_pred HHhcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCCCCCcH
Confidence 445555 99999999999987666544 445 599999999999865 3444444 46999999999999986
Q ss_pred chHh----hhccCcceEEeCCCCccccc-------CcccccccCceeEEeccCCccCCCC
Q 036411 437 IPIA----LLRSSTLLTLDLRDNKFFGR-------IPHQINELSNLHFLLLRGNSLQGRI 485 (487)
Q Consensus 437 ~~~~----~~~~~~L~~L~l~~~~~~~~-------~~~~l~~l~~L~~L~l~~~~~~~~~ 485 (487)
.... +..+++|+.|++++|.+... ++..+..+++|+.|++++|++....
T Consensus 241 ~~~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~l~~~~ 300 (362)
T 3goz_A 241 SLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIHPSH 300 (362)
T ss_dssp CHHHHHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSCBCCGGG
T ss_pred HHHHHHHHHhcCCCccEEEeccCCccccCHHHHHHHHHHhccCCceEEEecCCCcCCCcc
Confidence 5533 45679999999999984332 3346678899999999999987653
|
| >2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A | Back alignment and structure |
|---|
Probab=99.82 E-value=4.3e-21 Score=181.38 Aligned_cols=102 Identities=23% Similarity=0.250 Sum_probs=50.2
Q ss_pred ccccccccccCCcccEEeCCCCcccCCcchHh---hhcCCCCcEEEcccCCCCCCCCCCCCcCCCCCcEEEccCCccccc
Q 036411 167 LNVNSSFLLHQHHLKFLDLSHNQLVGNFPTWL---LQNNTGLEVLILWNNSFSGILPRLPNAKYDKLRHLDISTNNFSGK 243 (487)
Q Consensus 167 ~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~---~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~ 243 (487)
...+...+..+++|+.|++++|.+.+..+..+ +..+++|++|++++|.+.. +.+.
T Consensus 21 ~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~----------------------l~~~ 78 (386)
T 2ca6_A 21 EKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGR----------------------VKDE 78 (386)
T ss_dssp HHTTSHHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTS----------------------CGGG
T ss_pred HHHHHHHHhcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCc----------------------cccc
Confidence 34455556667777777777777654333322 1234444444444432221 1111
Q ss_pred CCccc------ccccCceEEEEccCCCCCC----CcchhhhccccCcEEecccccCC
Q 036411 244 LPENL------GIVFQKLIYLDVSKNSFEG----NIPYSISEMKELITLDLSRNNFS 290 (487)
Q Consensus 244 ~~~~~------~~~~~~L~~L~l~~~~~~~----~~~~~~~~~~~L~~L~l~~~~~~ 290 (487)
+|..+ ...+++|++|++++|.+.. .++..+..+++|+.|++++|.+.
T Consensus 79 ~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~ 135 (386)
T 2ca6_A 79 IPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLG 135 (386)
T ss_dssp SHHHHHHHHHHHTTCTTCCEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCH
T ss_pred hhHHHHHHHHHHhhCCcccEEECCCCcCCHHHHHHHHHHHHhCCCCCEEECcCCCCC
Confidence 22221 1123556666666666554 23344555666666666666654
|
| >4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* | Back alignment and structure |
|---|
Probab=99.79 E-value=7.3e-19 Score=163.44 Aligned_cols=240 Identities=15% Similarity=0.083 Sum_probs=120.1
Q ss_pred cEEEcccCCCCCCCCCCCCcCCCCCcEEEccCCcccccCCcccccccCceEEEEccCCCCCCCcc-hhhhccccCcE-Ee
Q 036411 206 EVLILWNNSFSGILPRLPNAKYDKLRHLDISTNNFSGKLPENLGIVFQKLIYLDVSKNSFEGNIP-YSISEMKELIT-LD 283 (487)
Q Consensus 206 ~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~-~~~~~~~~L~~-L~ 283 (487)
+.++++++.++.++.. -.++++.|++++|.++ .++...+..+++|++|+|++|.+.+..+ .++.++++++. +.
T Consensus 12 ~~v~C~~~~Lt~iP~~----l~~~l~~L~Ls~N~i~-~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~ 86 (350)
T 4ay9_X 12 RVFLCQESKVTEIPSD----LPRNAIELRFVLTKLR-VIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRI 86 (350)
T ss_dssp TEEEEESTTCCSCCTT----CCTTCSEEEEESCCCS-EECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEE
T ss_pred CEEEecCCCCCccCcC----cCCCCCEEEccCCcCC-CcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhc
Confidence 3455555555433222 1245666666666665 4444444445666666666666543322 24455555544 33
Q ss_pred cccccCCCCCchhhhcCCCCCcEEECCCCccCCCCCcCCcCCCCccEEEcCCC-cccccccccccCCC-cccEEEccCCc
Q 036411 284 LSRNNFSGELPRSIFSSCLSLETLDLSNNNFYGQLFPNFMNLTHLSSLRLNNN-HFSGKMADGLLSST-LLDVLDVSNNK 361 (487)
Q Consensus 284 l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~-~~~~~~~~~~~~~~-~L~~L~l~~~~ 361 (487)
+.+|++. .++...|..+++|++|++++|.+.......+.....+..+++.++ .+.......+.... .++.|++++|+
T Consensus 87 ~~~N~l~-~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~ 165 (350)
T 4ay9_X 87 EKANNLL-YINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNG 165 (350)
T ss_dssp EEETTCC-EECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSC
T ss_pred ccCCccc-ccCchhhhhccccccccccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhcccccc
Confidence 3445555 555555666666666666666665444444444455555555442 34333333333332 45566666666
Q ss_pred cCCCchhhhcccccccEEecCC-ccccCcchhhhccCcCCcEEeccCCccccccccccCCCcceEEEeeCcccCCcchHh
Q 036411 362 LSGDIPHWIGNFSVLWLLLMSE-NYLQGSIPVQLGNLESLEFIDISENGLSVSMVSLSNLSSVKHIYLHNNAINGLIPIA 440 (487)
Q Consensus 362 ~~~~~~~~~~~~~~L~~L~l~~-~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~ 440 (487)
++. ++......++++++++.+ |.+....+..|..+++|+.|++++|+++..+.. .+.+|+.|...++.-.+..| .
T Consensus 166 i~~-i~~~~f~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~~lp~~--~~~~L~~L~~l~~~~l~~lP-~ 241 (350)
T 4ay9_X 166 IQE-IHNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSY--GLENLKKLRARSTYNLKKLP-T 241 (350)
T ss_dssp CCE-ECTTSSTTEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSCCCCCCSS--SCTTCCEEECTTCTTCCCCC-C
T ss_pred ccC-CChhhccccchhHHhhccCCcccCCCHHHhccCcccchhhcCCCCcCccChh--hhccchHhhhccCCCcCcCC-C
Confidence 652 333333345566666654 334322333455666666666666665433321 23445555544443222333 2
Q ss_pred hhccCcceEEeCCCC
Q 036411 441 LLRSSTLLTLDLRDN 455 (487)
Q Consensus 441 ~~~~~~L~~L~l~~~ 455 (487)
+..+++|+.+++.++
T Consensus 242 l~~l~~L~~l~l~~~ 256 (350)
T 4ay9_X 242 LEKLVALMEASLTYP 256 (350)
T ss_dssp TTTCCSCCEEECSCH
T ss_pred chhCcChhhCcCCCC
Confidence 445556666665543
|
| >2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri} | Back alignment and structure |
|---|
Probab=99.78 E-value=1.3e-18 Score=149.26 Aligned_cols=177 Identities=21% Similarity=0.220 Sum_probs=95.5
Q ss_pred EEEEccCCCCCCCcchhhhccccCcEEecccccCCCCCchhhhcCCCCCcEEECCCCccCCCCCcCCcCCCCccEEEcCC
Q 036411 256 IYLDVSKNSFEGNIPYSISEMKELITLDLSRNNFSGELPRSIFSSCLSLETLDLSNNNFYGQLFPNFMNLTHLSSLRLNN 335 (487)
Q Consensus 256 ~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~ 335 (487)
+.++.+++.++ ..+..+ .++++.|++++|.+. .++...|..+++|++|++++|.+.+..+..+..+++|++|++++
T Consensus 10 ~~v~c~~~~l~-~~p~~~--~~~l~~L~l~~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~ 85 (208)
T 2o6s_A 10 TTVECYSQGRT-SVPTGI--PAQTTYLDLETNSLK-SLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLST 85 (208)
T ss_dssp TEEECCSSCCS-SCCSCC--CTTCSEEECCSSCCC-CCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CEEEecCCCcc-CCCCCC--CCCCcEEEcCCCccC-cCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCC
Confidence 34555555544 222222 345666666666665 55555556666666666666666544444455566666666666
Q ss_pred CcccccccccccCCCcccEEEccCCccCCCchhhhcccccccEEecCCccccCcchhhhccCcCCcEEeccCCccccccc
Q 036411 336 NHFSGKMADGLLSSTLLDVLDVSNNKLSGDIPHWIGNFSVLWLLLMSENYLQGSIPVQLGNLESLEFIDISENGLSVSMV 415 (487)
Q Consensus 336 ~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~ 415 (487)
|.+.+.....+..+++|++|++++|++++..+..+..+++|++|++++|.+++..+..+..+++|+.|++++|++.
T Consensus 86 n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~---- 161 (208)
T 2o6s_A 86 NQLQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWD---- 161 (208)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBC----
T ss_pred CcCCccCHhHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCCCee----
Confidence 6665444444555566666666666655444444555556666666655555433334555555555555555432
Q ss_pred cccCCCcceEEEeeCcccCCcchHhhh
Q 036411 416 SLSNLSSVKHIYLHNNAINGLIPIALL 442 (487)
Q Consensus 416 ~~~~~~~L~~L~l~~~~~~~~~~~~~~ 442 (487)
..+++|+.|++..|.+++.+|..+.
T Consensus 162 --~~~~~l~~L~~~~n~~~g~ip~~~~ 186 (208)
T 2o6s_A 162 --CTCPGIRYLSEWINKHSGVVRNSAG 186 (208)
T ss_dssp --CCTTTTHHHHHHHHHCTTTBBCTTS
T ss_pred --cCCCCHHHHHHHHHhCCceeeccCc
Confidence 1334444444444544444444333
|
| >2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri} | Back alignment and structure |
|---|
Probab=99.77 E-value=3.6e-18 Score=146.39 Aligned_cols=180 Identities=22% Similarity=0.207 Sum_probs=123.1
Q ss_pred cEEecccccCCCCCchhhhcCCCCCcEEECCCCccCCCCCcCCcCCCCccEEEcCCCcccccccccccCCCcccEEEccC
Q 036411 280 ITLDLSRNNFSGELPRSIFSSCLSLETLDLSNNNFYGQLFPNFMNLTHLSSLRLNNNHFSGKMADGLLSSTLLDVLDVSN 359 (487)
Q Consensus 280 ~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~ 359 (487)
+.++.+++.+. .+|... .++|++|++++|.+.+.....+..+++|++|++++|.+.+.....+..+++|++|++++
T Consensus 10 ~~v~c~~~~l~-~~p~~~---~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~ 85 (208)
T 2o6s_A 10 TTVECYSQGRT-SVPTGI---PAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLST 85 (208)
T ss_dssp TEEECCSSCCS-SCCSCC---CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CEEEecCCCcc-CCCCCC---CCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCC
Confidence 45666666665 566543 45777777777777655555566777777777777777655555566777777777777
Q ss_pred CccCCCchhhhcccccccEEecCCccccCcchhhhccCcCCcEEeccCCcccccccc-ccCCCcceEEEeeCcccCCcch
Q 036411 360 NKLSGDIPHWIGNFSVLWLLLMSENYLQGSIPVQLGNLESLEFIDISENGLSVSMVS-LSNLSSVKHIYLHNNAINGLIP 438 (487)
Q Consensus 360 ~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~-~~~~~~L~~L~l~~~~~~~~~~ 438 (487)
|++++..+..+..+++|++|++++|.+....+..+..+++|+.|++++|.++..... +..+++|++|++++|.+..
T Consensus 86 n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~--- 162 (208)
T 2o6s_A 86 NQLQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDC--- 162 (208)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCC---
T ss_pred CcCCccCHhHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCCCeec---
Confidence 777766556667777777777777777755555567777777777777777544443 4567777777777776653
Q ss_pred HhhhccCcceEEeCCCCcccccCcccccccCc
Q 036411 439 IALLRSSTLLTLDLRDNKFFGRIPHQINELSN 470 (487)
Q Consensus 439 ~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~ 470 (487)
.+++|+.|+++.|++++.+|..++.++.
T Consensus 163 ----~~~~l~~L~~~~n~~~g~ip~~~~~l~~ 190 (208)
T 2o6s_A 163 ----TCPGIRYLSEWINKHSGVVRNSAGSVAP 190 (208)
T ss_dssp ----CTTTTHHHHHHHHHCTTTBBCTTSSBCT
T ss_pred ----CCCCHHHHHHHHHhCCceeeccCccccC
Confidence 2456777777777777777777776654
|
| >1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A | Back alignment and structure |
|---|
Probab=99.76 E-value=4.8e-18 Score=153.32 Aligned_cols=190 Identities=20% Similarity=0.252 Sum_probs=146.4
Q ss_pred eEEEEccCCCCCCCcchhhhccccCcEEecccccCCCCCchhhhcCCCCCcEEECCCCccCCCCCcCCcCCCCccEEEcC
Q 036411 255 LIYLDVSKNSFEGNIPYSISEMKELITLDLSRNNFSGELPRSIFSSCLSLETLDLSNNNFYGQLFPNFMNLTHLSSLRLN 334 (487)
Q Consensus 255 L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~ 334 (487)
+..+.+.+..+.+. .....+++|+.|++++|.+. .++. +..+++|+.|++++|.+.+..+ +..+++|+.|+++
T Consensus 26 ~~~~~l~~~~~~~~--~~~~~l~~L~~L~l~~~~i~-~~~~--~~~l~~L~~L~L~~n~l~~~~~--l~~l~~L~~L~l~ 98 (291)
T 1h6t_A 26 TIKDNLKKKSVTDA--VTQNELNSIDQIIANNSDIK-SVQG--IQYLPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLD 98 (291)
T ss_dssp HHHHHTTCSCTTSE--ECHHHHHTCCEEECTTSCCC-CCTT--GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECC
T ss_pred HHHHHhcCCCcccc--cchhhcCcccEEEccCCCcc-cChh--HhcCCCCCEEEccCCccCCCcc--cccCCCCCEEECC
Confidence 44445555555432 23457888999999999887 6654 5778999999999998876443 7888999999999
Q ss_pred CCcccccccccccCCCcccEEEccCCccCCCchhhhcccccccEEecCCccccCcchhhhccCcCCcEEeccCCcccccc
Q 036411 335 NNHFSGKMADGLLSSTLLDVLDVSNNKLSGDIPHWIGNFSVLWLLLMSENYLQGSIPVQLGNLESLEFIDISENGLSVSM 414 (487)
Q Consensus 335 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~ 414 (487)
+|.+.+. ..+..+++|+.|++++|++.+. ..+..+++|++|++++|.+.+. ..+..+++|+.|++++|++....
T Consensus 99 ~n~l~~~--~~l~~l~~L~~L~L~~n~i~~~--~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~N~l~~~~ 172 (291)
T 1h6t_A 99 ENKVKDL--SSLKDLKKLKSLSLEHNGISDI--NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIV 172 (291)
T ss_dssp SSCCCCG--GGGTTCTTCCEEECTTSCCCCC--GGGGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCG
T ss_pred CCcCCCC--hhhccCCCCCEEECCCCcCCCC--hhhcCCCCCCEEEccCCcCCcc--hhhccCCCCCEEEccCCccccch
Confidence 9988742 3477888999999999988754 4577888899999999888754 56778888888999888887554
Q ss_pred ccccCCCcceEEEeeCcccCCcchHhhhccCcceEEeCCCCccccc
Q 036411 415 VSLSNLSSVKHIYLHNNAINGLIPIALLRSSTLLTLDLRDNKFFGR 460 (487)
Q Consensus 415 ~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~ 460 (487)
. +..+++|+.|++++|.+++. + .+..+++|+.|++++|+++..
T Consensus 173 ~-l~~l~~L~~L~L~~N~i~~l-~-~l~~l~~L~~L~l~~n~i~~~ 215 (291)
T 1h6t_A 173 P-LAGLTKLQNLYLSKNHISDL-R-ALAGLKNLDVLELFSQECLNK 215 (291)
T ss_dssp G-GTTCTTCCEEECCSSCCCBC-G-GGTTCTTCSEEEEEEEEEECC
T ss_pred h-hcCCCccCEEECCCCcCCCC-h-hhccCCCCCEEECcCCcccCC
Confidence 4 77888888888888888865 3 377788888888888887643
|
| >1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A | Back alignment and structure |
|---|
Probab=99.76 E-value=9.7e-18 Score=151.33 Aligned_cols=174 Identities=20% Similarity=0.265 Sum_probs=149.1
Q ss_pred ccCceEEEEccCCCCCCCcchhhhccccCcEEecccccCCCCCchhhhcCCCCCcEEECCCCccCCCCCcCCcCCCCccE
Q 036411 251 VFQKLIYLDVSKNSFEGNIPYSISEMKELITLDLSRNNFSGELPRSIFSSCLSLETLDLSNNNFYGQLFPNFMNLTHLSS 330 (487)
Q Consensus 251 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~ 330 (487)
.+++|++|++++|.+... ..+..+++|+.|++++|.+. .++. +..+++|+.|++++|.+.+ .+.+..+++|+.
T Consensus 44 ~l~~L~~L~l~~~~i~~~--~~~~~l~~L~~L~L~~n~l~-~~~~--l~~l~~L~~L~l~~n~l~~--~~~l~~l~~L~~ 116 (291)
T 1h6t_A 44 ELNSIDQIIANNSDIKSV--QGIQYLPNVTKLFLNGNKLT-DIKP--LANLKNLGWLFLDENKVKD--LSSLKDLKKLKS 116 (291)
T ss_dssp HHHTCCEEECTTSCCCCC--TTGGGCTTCCEEECCSSCCC-CCGG--GTTCTTCCEEECCSSCCCC--GGGGTTCTTCCE
T ss_pred hcCcccEEEccCCCcccC--hhHhcCCCCCEEEccCCccC-CCcc--cccCCCCCEEECCCCcCCC--ChhhccCCCCCE
Confidence 357899999999998744 35788999999999999998 5665 7889999999999999875 345889999999
Q ss_pred EEcCCCcccccccccccCCCcccEEEccCCccCCCchhhhcccccccEEecCCccccCcchhhhccCcCCcEEeccCCcc
Q 036411 331 LRLNNNHFSGKMADGLLSSTLLDVLDVSNNKLSGDIPHWIGNFSVLWLLLMSENYLQGSIPVQLGNLESLEFIDISENGL 410 (487)
Q Consensus 331 L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~ 410 (487)
|++++|.+.+. ..+..+++|+.|++++|++++. ..+..+++|++|++++|.+.+..+ +..+++|+.|++++|.+
T Consensus 117 L~L~~n~i~~~--~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~L~~N~i 190 (291)
T 1h6t_A 117 LSLEHNGISDI--NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHI 190 (291)
T ss_dssp EECTTSCCCCC--GGGGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCC
T ss_pred EECCCCcCCCC--hhhcCCCCCCEEEccCCcCCcc--hhhccCCCCCEEEccCCccccchh--hcCCCccCEEECCCCcC
Confidence 99999998753 4677899999999999999865 678999999999999999986544 88999999999999999
Q ss_pred ccccccccCCCcceEEEeeCcccCCcch
Q 036411 411 SVSMVSLSNLSSVKHIYLHNNAINGLIP 438 (487)
Q Consensus 411 ~~~~~~~~~~~~L~~L~l~~~~~~~~~~ 438 (487)
+.. ..+..+++|+.|++++|++.....
T Consensus 191 ~~l-~~l~~l~~L~~L~l~~n~i~~~~~ 217 (291)
T 1h6t_A 191 SDL-RALAGLKNLDVLELFSQECLNKPI 217 (291)
T ss_dssp CBC-GGGTTCTTCSEEEEEEEEEECCCE
T ss_pred CCC-hhhccCCCCCEEECcCCcccCCcc
Confidence 754 457899999999999999886543
|
| >4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* | Back alignment and structure |
|---|
Probab=99.76 E-value=1e-17 Score=155.73 Aligned_cols=240 Identities=19% Similarity=0.154 Sum_probs=186.2
Q ss_pred cEEEccCCcccccCCcccccccCceEEEEccCCCCCCCcchhhhccccCcEEecccccCCCCCchhhhcCCCCCcE-EEC
Q 036411 231 RHLDISTNNFSGKLPENLGIVFQKLIYLDVSKNSFEGNIPYSISEMKELITLDLSRNNFSGELPRSIFSSCLSLET-LDL 309 (487)
Q Consensus 231 ~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~-L~l 309 (487)
+.++.+++.++ .+|..+ ++++++|++++|.++...+.+|.++++|+.|++++|.+.+.++...|.+++++++ +.+
T Consensus 12 ~~v~C~~~~Lt-~iP~~l---~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~ 87 (350)
T 4ay9_X 12 RVFLCQESKVT-EIPSDL---PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIE 87 (350)
T ss_dssp TEEEEESTTCC-SCCTTC---CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEE
T ss_pred CEEEecCCCCC-ccCcCc---CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcc
Confidence 56777777777 677665 4689999999999985555678999999999999999876788888999998876 555
Q ss_pred CCCccCCCCCcCCcCCCCccEEEcCCCcccccccccccCCCcccEEEccCC-ccCCCchhhhcccc-cccEEecCCcccc
Q 036411 310 SNNNFYGQLFPNFMNLTHLSSLRLNNNHFSGKMADGLLSSTLLDVLDVSNN-KLSGDIPHWIGNFS-VLWLLLMSENYLQ 387 (487)
Q Consensus 310 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~-~~~~~~~~~~~~~~-~L~~L~l~~~~~~ 387 (487)
.+|.+....+..|..+++|+.|++++|.+.......+....++..+++.++ .+....+..+..+. .++.|++++|.++
T Consensus 88 ~~N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~ 167 (350)
T 4ay9_X 88 KANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQ 167 (350)
T ss_dssp EETTCCEECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCC
T ss_pred cCCcccccCchhhhhccccccccccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhcccccccc
Confidence 567887777788999999999999999998666666667778889999764 55544445566654 6889999999998
Q ss_pred CcchhhhccCcCCcEEeccC-Cccccccc-cccCCCcceEEEeeCcccCCcchHhhhccCcceEEeCCCCcccccCcccc
Q 036411 388 GSIPVQLGNLESLEFIDISE-NGLSVSMV-SLSNLSSVKHIYLHNNAINGLIPIALLRSSTLLTLDLRDNKFFGRIPHQI 465 (487)
Q Consensus 388 ~~~~~~~~~~~~L~~l~l~~-~~~~~~~~-~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l 465 (487)
. .+.......+|+.+++.+ |.+...+. .|..+++|++|++++|+++...+..+. +|+.|.+.++.-...+| .+
T Consensus 168 ~-i~~~~f~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~~lp~~~~~---~L~~L~~l~~~~l~~lP-~l 242 (350)
T 4ay9_X 168 E-IHNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYGLE---NLKKLRARSTYNLKKLP-TL 242 (350)
T ss_dssp E-ECTTSSTTEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSCCCCCCSSSCT---TCCEEECTTCTTCCCCC-CT
T ss_pred C-CChhhccccchhHHhhccCCcccCCCHHHhccCcccchhhcCCCCcCccChhhhc---cchHhhhccCCCcCcCC-Cc
Confidence 4 444444567899999975 55655543 567899999999999999987665544 56666665555445666 47
Q ss_pred cccCceeEEeccCC
Q 036411 466 NELSNLHFLLLRGN 479 (487)
Q Consensus 466 ~~l~~L~~L~l~~~ 479 (487)
..+++|+.+++.++
T Consensus 243 ~~l~~L~~l~l~~~ 256 (350)
T 4ay9_X 243 EKLVALMEASLTYP 256 (350)
T ss_dssp TTCCSCCEEECSCH
T ss_pred hhCcChhhCcCCCC
Confidence 89999999999764
|
| >3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} | Back alignment and structure |
|---|
Probab=99.75 E-value=9.9e-18 Score=163.71 Aligned_cols=188 Identities=25% Similarity=0.350 Sum_probs=134.6
Q ss_pred ceEEEEccCCCCCCCcchhhhccccCcEEecccccCCCCCchhhhcCCCCCcEEECCCCccCCCCCcCCcCCCCccEEEc
Q 036411 254 KLIYLDVSKNSFEGNIPYSISEMKELITLDLSRNNFSGELPRSIFSSCLSLETLDLSNNNFYGQLFPNFMNLTHLSSLRL 333 (487)
Q Consensus 254 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l 333 (487)
+++.|++++|.+++ ++..+ .++|+.|++++|.+. .+| ..+++|+.|++++|.+.+ ++. +.. +|+.|++
T Consensus 60 ~L~~L~Ls~n~L~~-lp~~l--~~~L~~L~Ls~N~l~-~ip----~~l~~L~~L~Ls~N~l~~-ip~-l~~--~L~~L~L 127 (571)
T 3cvr_A 60 QFSELQLNRLNLSS-LPDNL--PPQITVLEITQNALI-SLP----ELPASLEYLDACDNRLST-LPE-LPA--SLKHLDV 127 (571)
T ss_dssp TCSEEECCSSCCSC-CCSCC--CTTCSEEECCSSCCS-CCC----CCCTTCCEEECCSSCCSC-CCC-CCT--TCCEEEC
T ss_pred CccEEEeCCCCCCc-cCHhH--cCCCCEEECcCCCCc-ccc----cccCCCCEEEccCCCCCC-cch-hhc--CCCEEEC
Confidence 78888888888875 44433 367888888888887 777 236788888888888776 333 443 8888888
Q ss_pred CCCcccccccccccCCCcccEEEccCCccCCCchhhhcccccccEEecCCccccCcchhhhccCcCCcEEeccCCccccc
Q 036411 334 NNNHFSGKMADGLLSSTLLDVLDVSNNKLSGDIPHWIGNFSVLWLLLMSENYLQGSIPVQLGNLESLEFIDISENGLSVS 413 (487)
Q Consensus 334 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~ 413 (487)
++|.+++ .+. .+++|+.|++++|.+++ +|. .+++|++|++++|.+++ .|. +. ++|+.|++++|.++..
T Consensus 128 s~N~l~~-lp~---~l~~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~L~~-lp~-l~--~~L~~L~Ls~N~L~~l 195 (571)
T 3cvr_A 128 DNNQLTM-LPE---LPALLEYINADNNQLTM-LPE---LPTSLEVLSVRNNQLTF-LPE-LP--ESLEALDVSTNLLESL 195 (571)
T ss_dssp CSSCCSC-CCC---CCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSC-CCC-CC--TTCCEEECCSSCCSSC
T ss_pred CCCcCCC-CCC---cCccccEEeCCCCccCc-CCC---cCCCcCEEECCCCCCCC-cch-hh--CCCCEEECcCCCCCch
Confidence 8888875 333 56788888888888875 444 56788888888888774 444 54 7888888888888755
Q ss_pred cccccCCCcc-------eEEEeeCcccCCcchHhhhccCcceEEeCCCCcccccCcccccccC
Q 036411 414 MVSLSNLSSV-------KHIYLHNNAINGLIPIALLRSSTLLTLDLRDNKFFGRIPHQINELS 469 (487)
Q Consensus 414 ~~~~~~~~~L-------~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~ 469 (487)
+. +.. +| +.|++++|.++.+ |..+..+++|+.|++++|++++.+|..+..++
T Consensus 196 p~-~~~--~L~~~~~~L~~L~Ls~N~l~~l-p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~ 254 (571)
T 3cvr_A 196 PA-VPV--RNHHSEETEIFFRCRENRITHI-PENILSLDPTCTIILEDNPLSSRIRESLSQQT 254 (571)
T ss_dssp CC-CC----------CCEEEECCSSCCCCC-CGGGGGSCTTEEEECCSSSCCHHHHHHHHHHH
T ss_pred hh-HHH--hhhcccccceEEecCCCcceec-CHHHhcCCCCCEEEeeCCcCCCcCHHHHHHhh
Confidence 54 432 66 8888888888754 44555578888888888888777777766654
|
| >1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A | Back alignment and structure |
|---|
Probab=99.74 E-value=7e-18 Score=166.68 Aligned_cols=203 Identities=19% Similarity=0.240 Sum_probs=159.9
Q ss_pred ceEEEEccCCCCCCCcchhhhccccCcEEecccccCCCCCchhhhcCCCCCcEEECCCCccCCCCCcCCcCCCCccEEEc
Q 036411 254 KLIYLDVSKNSFEGNIPYSISEMKELITLDLSRNNFSGELPRSIFSSCLSLETLDLSNNNFYGQLFPNFMNLTHLSSLRL 333 (487)
Q Consensus 254 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l 333 (487)
.+..+.+..+.+.+.. .+..+++|+.|++++|.+. .++. +..+++|+.|++++|.+.+..+ +..+++|+.|++
T Consensus 22 ~l~~l~l~~~~i~~~~--~~~~L~~L~~L~l~~n~i~-~l~~--l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~L 94 (605)
T 1m9s_A 22 ETIKDNLKKKSVTDAV--TQNELNSIDQIIANNSDIK-SVQG--IQYLPNVTKLFLNGNKLTDIKP--LTNLKNLGWLFL 94 (605)
T ss_dssp HHHHHHTTCSCTTSEE--CHHHHTTCCCCBCTTCCCC-CCTT--GGGCTTCCEEECTTSCCCCCGG--GGGCTTCCEEEC
T ss_pred HHHHHhccCCCccccc--chhcCCCCCEEECcCCCCC-CChH--HccCCCCCEEEeeCCCCCCChh--hccCCCCCEEEC
Confidence 4555667777665433 3567889999999999987 6664 6789999999999999876443 788999999999
Q ss_pred CCCcccccccccccCCCcccEEEccCCccCCCchhhhcccccccEEecCCccccCcchhhhccCcCCcEEeccCCccccc
Q 036411 334 NNNHFSGKMADGLLSSTLLDVLDVSNNKLSGDIPHWIGNFSVLWLLLMSENYLQGSIPVQLGNLESLEFIDISENGLSVS 413 (487)
Q Consensus 334 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~ 413 (487)
++|.+.. ...+..+++|+.|++++|++.+. ..+..+++|+.|++++|.+... ..+..+++|+.|+|++|.+...
T Consensus 95 s~N~l~~--l~~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~~ 168 (605)
T 1m9s_A 95 DENKIKD--LSSLKDLKKLKSLSLEHNGISDI--NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDI 168 (605)
T ss_dssp CSSCCCC--CTTSTTCTTCCEEECTTSCCCCC--GGGGGCTTCSEEECCSSCCCCC--GGGGSCTTCSEEECCSSCCCCC
T ss_pred cCCCCCC--ChhhccCCCCCEEEecCCCCCCC--ccccCCCccCEEECCCCccCCc--hhhcccCCCCEEECcCCcCCCc
Confidence 9999874 23678889999999999998753 4588899999999999988754 5678889999999999998755
Q ss_pred cccccCCCcceEEEeeCcccCCcchHhhhccCcceEEeCCCCcccccCcccccccCcee
Q 036411 414 MVSLSNLSSVKHIYLHNNAINGLIPIALLRSSTLLTLDLRDNKFFGRIPHQINELSNLH 472 (487)
Q Consensus 414 ~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~ 472 (487)
.+ +..+++|+.|++++|.+.+. ..+..+++|+.|+|++|+++......+..+..+.
T Consensus 169 ~~-l~~l~~L~~L~Ls~N~i~~l--~~l~~l~~L~~L~L~~N~l~~~p~~~~~~l~~~~ 224 (605)
T 1m9s_A 169 VP-LAGLTKLQNLYLSKNHISDL--RALAGLKNLDVLELFSQECLNKPINHQSNLVVPN 224 (605)
T ss_dssp GG-GTTCTTCCEEECCSSCCCBC--GGGTTCTTCSEEECCSEEEECCCCCCCSSCEEEC
T ss_pred hh-hccCCCCCEEECcCCCCCCC--hHHccCCCCCEEEccCCcCcCCcccccccEEecc
Confidence 55 77889999999999998865 3577889999999999988654444444444333
|
| >1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A | Back alignment and structure |
|---|
Probab=99.73 E-value=3.9e-17 Score=161.42 Aligned_cols=174 Identities=20% Similarity=0.271 Sum_probs=150.3
Q ss_pred ccCceEEEEccCCCCCCCcchhhhccccCcEEecccccCCCCCchhhhcCCCCCcEEECCCCccCCCCCcCCcCCCCccE
Q 036411 251 VFQKLIYLDVSKNSFEGNIPYSISEMKELITLDLSRNNFSGELPRSIFSSCLSLETLDLSNNNFYGQLFPNFMNLTHLSS 330 (487)
Q Consensus 251 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~ 330 (487)
.++.|+.|++++|.+... + .+..+++|+.|++++|.+. .++. +..+++|+.|++++|.+.+ .+.+..+++|+.
T Consensus 41 ~L~~L~~L~l~~n~i~~l-~-~l~~l~~L~~L~Ls~N~l~-~~~~--l~~l~~L~~L~Ls~N~l~~--l~~l~~l~~L~~ 113 (605)
T 1m9s_A 41 ELNSIDQIIANNSDIKSV-Q-GIQYLPNVTKLFLNGNKLT-DIKP--LTNLKNLGWLFLDENKIKD--LSSLKDLKKLKS 113 (605)
T ss_dssp HHTTCCCCBCTTCCCCCC-T-TGGGCTTCCEEECTTSCCC-CCGG--GGGCTTCCEEECCSSCCCC--CTTSTTCTTCCE
T ss_pred cCCCCCEEECcCCCCCCC-h-HHccCCCCCEEEeeCCCCC-CChh--hccCCCCCEEECcCCCCCC--ChhhccCCCCCE
Confidence 357899999999998743 2 5888999999999999998 5655 6889999999999999875 347889999999
Q ss_pred EEcCCCcccccccccccCCCcccEEEccCCccCCCchhhhcccccccEEecCCccccCcchhhhccCcCCcEEeccCCcc
Q 036411 331 LRLNNNHFSGKMADGLLSSTLLDVLDVSNNKLSGDIPHWIGNFSVLWLLLMSENYLQGSIPVQLGNLESLEFIDISENGL 410 (487)
Q Consensus 331 L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~ 410 (487)
|++++|.+... ..+..+++|+.|++++|.+.+. ..+..+++|+.|++++|.+.+..+ +..+++|+.|+|++|.+
T Consensus 114 L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~i 187 (605)
T 1m9s_A 114 LSLEHNGISDI--NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHI 187 (605)
T ss_dssp EECTTSCCCCC--GGGGGCTTCSEEECCSSCCCCC--GGGGSCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCC
T ss_pred EEecCCCCCCC--ccccCCCccCEEECCCCccCCc--hhhcccCCCCEEECcCCcCCCchh--hccCCCCCEEECcCCCC
Confidence 99999999743 4578899999999999999865 678999999999999999986555 88999999999999999
Q ss_pred ccccccccCCCcceEEEeeCcccCCcch
Q 036411 411 SVSMVSLSNLSSVKHIYLHNNAINGLIP 438 (487)
Q Consensus 411 ~~~~~~~~~~~~L~~L~l~~~~~~~~~~ 438 (487)
... ..+..+++|+.|++++|++.....
T Consensus 188 ~~l-~~l~~l~~L~~L~L~~N~l~~~p~ 214 (605)
T 1m9s_A 188 SDL-RALAGLKNLDVLELFSQECLNKPI 214 (605)
T ss_dssp CBC-GGGTTCTTCSEEECCSEEEECCCC
T ss_pred CCC-hHHccCCCCCEEEccCCcCcCCcc
Confidence 754 568899999999999999886543
|
| >2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A | Back alignment and structure |
|---|
Probab=99.73 E-value=2.5e-17 Score=142.03 Aligned_cols=151 Identities=17% Similarity=0.219 Sum_probs=100.1
Q ss_pred cEEECCCCccCCCCCcCCcCCCCccEEEcCCCcccccccccccCCCcccEEEccCCccCCCchhhhcccccccEEecCCc
Q 036411 305 ETLDLSNNNFYGQLFPNFMNLTHLSSLRLNNNHFSGKMADGLLSSTLLDVLDVSNNKLSGDIPHWIGNFSVLWLLLMSEN 384 (487)
Q Consensus 305 ~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~ 384 (487)
+.++.+++.+... +..+. +.++.|++++|.+....+..+..+++|+.|++++|++.+..+..|..+++|++|++++|
T Consensus 14 ~~v~c~~~~l~~i-P~~l~--~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N 90 (220)
T 2v9t_B 14 NIVDCRGKGLTEI-PTNLP--ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGN 90 (220)
T ss_dssp TEEECTTSCCSSC-CSSCC--TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSS
T ss_pred CEEEcCCCCcCcC-CCccC--cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCC
Confidence 5667777666532 33322 56777777777777555556677777777777777776666677777777777777777
Q ss_pred cccCcchhhhccCcCCcEEeccCCccccc-cccccCCCcceEEEeeCcccCCcchHhhhccCcceEEeCCCCccc
Q 036411 385 YLQGSIPVQLGNLESLEFIDISENGLSVS-MVSLSNLSSVKHIYLHNNAINGLIPIALLRSSTLLTLDLRDNKFF 458 (487)
Q Consensus 385 ~~~~~~~~~~~~~~~L~~l~l~~~~~~~~-~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 458 (487)
.++...+..|..+++|+.|++++|++... ...+..+++|+.|++++|.+++..+..+..+++|+.|++++|++.
T Consensus 91 ~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~ 165 (220)
T 2v9t_B 91 KITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFI 165 (220)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCEE
T ss_pred cCCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCcC
Confidence 77654445566677777777777766543 344556667777777777766666666666666777777777664
|
| >2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.72 E-value=3.6e-17 Score=152.59 Aligned_cols=175 Identities=27% Similarity=0.276 Sum_probs=106.0
Q ss_pred EEEEccCCCCCCCcchhhhccccCcEEecccccCCCCCchhhhc-CCCCCcEEECCCCccCCCCCcCCcCCCCccEEEcC
Q 036411 256 IYLDVSKNSFEGNIPYSISEMKELITLDLSRNNFSGELPRSIFS-SCLSLETLDLSNNNFYGQLFPNFMNLTHLSSLRLN 334 (487)
Q Consensus 256 ~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~-~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~ 334 (487)
+.++++++.++ .++..+ .+.++.|++++|.+. .++...|. .+++|+.|++++|.+.+..+..|..+++|+.|+++
T Consensus 21 ~~l~c~~~~l~-~iP~~~--~~~l~~L~Ls~N~l~-~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls 96 (361)
T 2xot_A 21 NILSCSKQQLP-NVPQSL--PSYTALLDLSHNNLS-RLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLS 96 (361)
T ss_dssp TEEECCSSCCS-SCCSSC--CTTCSEEECCSSCCC-EECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECC
T ss_pred CEEEeCCCCcC-ccCccC--CCCCCEEECCCCCCC-ccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECC
Confidence 45666666665 333333 234677777777776 55555555 66777777777777665555566667777777777
Q ss_pred CCcccccccccccCCCcccEEEccCCccCCCchhhhcccccccEEecCCccccCcchhhh---ccCcCCcEEeccCCccc
Q 036411 335 NNHFSGKMADGLLSSTLLDVLDVSNNKLSGDIPHWIGNFSVLWLLLMSENYLQGSIPVQL---GNLESLEFIDISENGLS 411 (487)
Q Consensus 335 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~---~~~~~L~~l~l~~~~~~ 411 (487)
+|.+.......+..+++|+.|++++|++....+..+..+++|++|++++|.+....+..+ ..+++|+.|++++|++.
T Consensus 97 ~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l~ 176 (361)
T 2xot_A 97 SNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLK 176 (361)
T ss_dssp SSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSCCC
T ss_pred CCcCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCCCC
Confidence 777665555556666777777777777665556666666777777777766664333333 34566666666666664
Q ss_pred ccc-ccccCCCc--ceEEEeeCcccC
Q 036411 412 VSM-VSLSNLSS--VKHIYLHNNAIN 434 (487)
Q Consensus 412 ~~~-~~~~~~~~--L~~L~l~~~~~~ 434 (487)
... ..+..++. ++.|++.+|.+.
T Consensus 177 ~l~~~~~~~l~~~~l~~l~l~~N~~~ 202 (361)
T 2xot_A 177 KLPLTDLQKLPAWVKNGLYLHNNPLE 202 (361)
T ss_dssp CCCHHHHHHSCHHHHTTEECCSSCEE
T ss_pred ccCHHHhhhccHhhcceEEecCCCcc
Confidence 322 22334444 355666666655
|
| >4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=99.72 E-value=2.9e-16 Score=148.37 Aligned_cols=334 Identities=12% Similarity=0.068 Sum_probs=205.6
Q ss_pred cccccccccCCCCCcEEEccCccccCCcccccccCCCCCcEEECCCCccCCCcchhccCCCCccEEeccCccccCCcccc
Q 036411 21 IDSILPYLNTLTSLTTLNLRYNKIEGSRTKQGICNLKNLLELDLSSNNFEGHLPQCLNNLTHLKVLDISYNQLSGNFPSV 100 (487)
Q Consensus 21 ~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~ 100 (487)
+.+...+|..+.+|+.+.+..+ +. .+...+|.+|++|+.+++.++ +.......|.+|++|+.+.+... +.......
T Consensus 60 tsIg~~AF~~c~~L~~i~lp~~-i~-~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~c~~L~~i~~p~~-l~~i~~~a 135 (394)
T 4fs7_A 60 VSIGYAAFQGCRKVTEIKIPST-VR-EIGEFAFENCSKLEIINIPDS-VKMIGRCTFSGCYALKSILLPLM-LKSIGVEA 135 (394)
T ss_dssp EEECTTTTTTCTTEEEEECCTT-CC-EECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCCCCCCTT-CCEECTTT
T ss_pred eEhHHHHhhCCCCceEEEeCCC-cc-CcchhHhhCCCCCcEEEeCCC-ceEccchhhcccccchhhcccCc-eeeeccee
Confidence 3445556777777777777644 32 244566777777777777654 33344456777777777666543 33233445
Q ss_pred ccCCCCCcEEeccccccCcchhHHHhhccccceEEEeccCCCccccccccccCCCCCceeecccccccccccccccCCcc
Q 036411 101 LTNLTSLEYLDLSFIDFQGTFLINSLANHSKLEVLVLSSGNDMLQVKTENWLPTYPLKVLQLSHCHLNVNSSFLLHQHHL 180 (487)
Q Consensus 101 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L 180 (487)
|..+..++........ ......|..+++|+.+.+. .....+....|..+.+|+.+.+..+.-......+..+..|
T Consensus 136 F~~~~~~~~~~~~~~~---~i~~~aF~~c~~L~~i~l~--~~~~~I~~~~F~~c~~L~~i~l~~~~~~I~~~~F~~~~~L 210 (394)
T 4fs7_A 136 FKGCDFKEITIPEGVT---VIGDEAFATCESLEYVSLP--DSMETLHNGLFSGCGKLKSIKLPRNLKIIRDYCFAECILL 210 (394)
T ss_dssp TTTCCCSEEECCTTCC---EECTTTTTTCTTCCEEECC--TTCCEECTTTTTTCTTCCBCCCCTTCCEECTTTTTTCTTC
T ss_pred eecccccccccCcccc---ccchhhhcccCCCcEEecC--CccceeccccccCCCCceEEEcCCCceEeCchhhcccccc
Confidence 5555443333322221 1223456777777777763 3345566667777777777777665334445566677777
Q ss_pred cEEeCCCCcccCCcchHhhhcCCCCcEEEcccCCCCCCCCCCCCcCCCCCcEEEccCCcccccCCcccccccCceEEEEc
Q 036411 181 KFLDLSHNQLVGNFPTWLLQNNTGLEVLILWNNSFSGILPRLPNAKYDKLRHLDISTNNFSGKLPENLGIVFQKLIYLDV 260 (487)
Q Consensus 181 ~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l 260 (487)
+.+.+..+... +... +..+..|+.+.+.... . ......+..+..++.+.+..+.. .+....+..+..++.+..
T Consensus 211 ~~i~~~~~~~~--i~~~-~~~~~~l~~i~ip~~~-~-~i~~~~f~~~~~l~~~~~~~~~~--~i~~~~F~~~~~l~~~~~ 283 (394)
T 4fs7_A 211 ENMEFPNSLYY--LGDF-ALSKTGVKNIIIPDSF-T-ELGKSVFYGCTDLESISIQNNKL--RIGGSLFYNCSGLKKVIY 283 (394)
T ss_dssp CBCCCCTTCCE--ECTT-TTTTCCCCEEEECTTC-C-EECSSTTTTCSSCCEEEECCTTC--EECSCTTTTCTTCCEEEE
T ss_pred ceeecCCCceE--eehh-hcccCCCceEEECCCc-e-ecccccccccccceeEEcCCCcc--eeeccccccccccceecc
Confidence 77766554321 1122 2245677777765432 1 11222446667777777765532 233333444566777766
Q ss_pred cCCCCCCCcchhhhccccCcEEecccccCCCCCchhhhcCCCCCcEEECCCCccCCCCCcCCcCCCCccEEEcCCCcccc
Q 036411 261 SKNSFEGNIPYSISEMKELITLDLSRNNFSGELPRSIFSSCLSLETLDLSNNNFYGQLFPNFMNLTHLSSLRLNNNHFSG 340 (487)
Q Consensus 261 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~ 340 (487)
....+ ....+..+.+|+.+.+.++ +. .++...|.+|.+|+.+++.++ +......+|..+.+|+.+++..+ +..
T Consensus 284 ~~~~i---~~~~F~~~~~L~~i~l~~~-i~-~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~c~~L~~i~lp~~-l~~ 356 (394)
T 4fs7_A 284 GSVIV---PEKTFYGCSSLTEVKLLDS-VK-FIGEEAFESCTSLVSIDLPYL-VEEIGKRSFRGCTSLSNINFPLS-LRK 356 (394)
T ss_dssp CSSEE---CTTTTTTCTTCCEEEECTT-CC-EECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCEECCCTT-CCE
T ss_pred Cceee---ccccccccccccccccccc-cc-eechhhhcCCCCCCEEEeCCc-ccEEhHHhccCCCCCCEEEECcc-ccE
Confidence 55433 2345677888888888654 44 677778888889998888654 44455667888888999888766 555
Q ss_pred cccccccCCCcccEEEccCCccCCCchhhhcccccccEE
Q 036411 341 KMADGLLSSTLLDVLDVSNNKLSGDIPHWIGNFSVLWLL 379 (487)
Q Consensus 341 ~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L 379 (487)
....+|.+|.+|+++++..+- . .+...|.+|++|+.+
T Consensus 357 I~~~aF~~C~~L~~i~lp~~~-~-~~~~~F~~c~~L~~I 393 (394)
T 4fs7_A 357 IGANAFQGCINLKKVELPKRL-E-QYRYDFEDTTKFKWI 393 (394)
T ss_dssp ECTTTBTTCTTCCEEEEEGGG-G-GGGGGBCTTCEEEEE
T ss_pred ehHHHhhCCCCCCEEEECCCC-E-EhhheecCCCCCcEE
Confidence 667788888999999887552 2 345678888888765
|
| >4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=99.72 E-value=3.1e-16 Score=148.23 Aligned_cols=65 Identities=11% Similarity=0.116 Sum_probs=46.3
Q ss_pred cccccccCCCCCcEEECCCCccCCCcchhccCCCCccEEeccCccccCCccccccCCCCCcEEeccc
Q 036411 48 RTKQGICNLKNLLELDLSSNNFEGHLPQCLNNLTHLKVLDISYNQLSGNFPSVLTNLTSLEYLDLSF 114 (487)
Q Consensus 48 ~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~ 114 (487)
+...+|.+|.+|+++.+..+ +......+|.+|++|+.+++..+ ++......|..|.+|+.+.+..
T Consensus 62 Ig~~AF~~c~~L~~i~lp~~-i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~c~~L~~i~~p~ 126 (394)
T 4fs7_A 62 IGYAAFQGCRKVTEIKIPST-VREIGEFAFENCSKLEIINIPDS-VKMIGRCTFSGCYALKSILLPL 126 (394)
T ss_dssp ECTTTTTTCTTEEEEECCTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCCCCCCT
T ss_pred hHHHHhhCCCCceEEEeCCC-ccCcchhHhhCCCCCcEEEeCCC-ceEccchhhcccccchhhcccC
Confidence 45567888888888888754 55455567888888888888654 4445556777888887766653
|
| >2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.72 E-value=3.1e-17 Score=141.48 Aligned_cols=152 Identities=28% Similarity=0.247 Sum_probs=106.8
Q ss_pred CcEEECCCCccCCCCCcCCcCCCCccEEEcCCCccccccc-ccccCCCcccEEEccCCccCCCchhhhcccccccEEecC
Q 036411 304 LETLDLSNNNFYGQLFPNFMNLTHLSSLRLNNNHFSGKMA-DGLLSSTLLDVLDVSNNKLSGDIPHWIGNFSVLWLLLMS 382 (487)
Q Consensus 304 L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~ 382 (487)
-+.++++++.+.+ ++..+ .+.+++|++++|.+.+..+ ..+..+++|+.|++++|++++..+..+..+++|++|+++
T Consensus 13 ~~~l~~s~n~l~~-iP~~~--~~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls 89 (220)
T 2v70_A 13 GTTVDCSNQKLNK-IPEHI--PQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLT 89 (220)
T ss_dssp TTEEECCSSCCSS-CCSCC--CTTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECC
T ss_pred CCEeEeCCCCccc-CccCC--CCCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECC
Confidence 3578888887764 33333 2456788888888775533 346677788888888887776666677777888888888
Q ss_pred CccccCcchhhhccCcCCcEEeccCCccccc-cccccCCCcceEEEeeCcccCCcchHhhhccCcceEEeCCCCccc
Q 036411 383 ENYLQGSIPVQLGNLESLEFIDISENGLSVS-MVSLSNLSSVKHIYLHNNAINGLIPIALLRSSTLLTLDLRDNKFF 458 (487)
Q Consensus 383 ~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~-~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 458 (487)
+|.+....+..|..+++|+.|++++|+++.. +..+..+++|++|++++|.+++..+..+..+++|+.|++++|++.
T Consensus 90 ~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~ 166 (220)
T 2v70_A 90 SNRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFN 166 (220)
T ss_dssp SSCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCEE
T ss_pred CCccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCCc
Confidence 8777766666677777777777777777544 445556777777777777777766667777777777777777764
|
| >3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} | Back alignment and structure |
|---|
Probab=99.72 E-value=6.2e-17 Score=158.08 Aligned_cols=188 Identities=28% Similarity=0.388 Sum_probs=150.3
Q ss_pred CCcEEEccCCcccccCCcccccccCceEEEEccCCCCCCCcchhhhccccCcEEecccccCCCCCchhhhcCCCCCcEEE
Q 036411 229 KLRHLDISTNNFSGKLPENLGIVFQKLIYLDVSKNSFEGNIPYSISEMKELITLDLSRNNFSGELPRSIFSSCLSLETLD 308 (487)
Q Consensus 229 ~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~ 308 (487)
+++.|+++++.+.+ +|..+ +++|++|++++|.++ .++ ..+++|+.|++++|.+. .+|. +.. +|+.|+
T Consensus 60 ~L~~L~Ls~n~L~~-lp~~l---~~~L~~L~Ls~N~l~-~ip---~~l~~L~~L~Ls~N~l~-~ip~--l~~--~L~~L~ 126 (571)
T 3cvr_A 60 QFSELQLNRLNLSS-LPDNL---PPQITVLEITQNALI-SLP---ELPASLEYLDACDNRLS-TLPE--LPA--SLKHLD 126 (571)
T ss_dssp TCSEEECCSSCCSC-CCSCC---CTTCSEEECCSSCCS-CCC---CCCTTCCEEECCSSCCS-CCCC--CCT--TCCEEE
T ss_pred CccEEEeCCCCCCc-cCHhH---cCCCCEEECcCCCCc-ccc---cccCCCCEEEccCCCCC-Ccch--hhc--CCCEEE
Confidence 78999999998874 66655 378999999999988 444 45789999999999998 5777 443 999999
Q ss_pred CCCCccCCCCCcCCcCCCCccEEEcCCCcccccccccccCCCcccEEEccCCccCCCchhhhcccccccEEecCCccccC
Q 036411 309 LSNNNFYGQLFPNFMNLTHLSSLRLNNNHFSGKMADGLLSSTLLDVLDVSNNKLSGDIPHWIGNFSVLWLLLMSENYLQG 388 (487)
Q Consensus 309 l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~ 388 (487)
+++|.+.+ ++. .+++|+.|++++|.+++ .+. .+++|+.|++++|++++ +|. +. ++|+.|++++|.++
T Consensus 127 Ls~N~l~~-lp~---~l~~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~L~~-lp~-l~--~~L~~L~Ls~N~L~- 193 (571)
T 3cvr_A 127 VDNNQLTM-LPE---LPALLEYINADNNQLTM-LPE---LPTSLEVLSVRNNQLTF-LPE-LP--ESLEALDVSTNLLE- 193 (571)
T ss_dssp CCSSCCSC-CCC---CCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSC-CCC-CC--TTCCEEECCSSCCS-
T ss_pred CCCCcCCC-CCC---cCccccEEeCCCCccCc-CCC---cCCCcCEEECCCCCCCC-cch-hh--CCCCEEECcCCCCC-
Confidence 99999876 333 57899999999999875 333 46889999999999885 555 55 89999999999988
Q ss_pred cchhhhccCcCC-------cEEeccCCccccccccccCCCcceEEEeeCcccCCcchHhhhccC
Q 036411 389 SIPVQLGNLESL-------EFIDISENGLSVSMVSLSNLSSVKHIYLHNNAINGLIPIALLRSS 445 (487)
Q Consensus 389 ~~~~~~~~~~~L-------~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~ 445 (487)
..|. +.. +| +.|++++|.++..+..+..+++|+.|++++|.+++..+..+..+.
T Consensus 194 ~lp~-~~~--~L~~~~~~L~~L~Ls~N~l~~lp~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~ 254 (571)
T 3cvr_A 194 SLPA-VPV--RNHHSEETEIFFRCRENRITHIPENILSLDPTCTIILEDNPLSSRIRESLSQQT 254 (571)
T ss_dssp SCCC-CC----------CCEEEECCSSCCCCCCGGGGGSCTTEEEECCSSSCCHHHHHHHHHHH
T ss_pred chhh-HHH--hhhcccccceEEecCCCcceecCHHHhcCCCCCEEEeeCCcCCCcCHHHHHHhh
Confidence 5555 543 67 999999999988888788899999999999999988887776543
|
| >2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.71 E-value=5.1e-17 Score=151.57 Aligned_cols=175 Identities=24% Similarity=0.232 Sum_probs=138.2
Q ss_pred cEEecccccCCCCCchhhhcCCCCCcEEECCCCccCCCCCcCCc-CCCCccEEEcCCCcccccccccccCCCcccEEEcc
Q 036411 280 ITLDLSRNNFSGELPRSIFSSCLSLETLDLSNNNFYGQLFPNFM-NLTHLSSLRLNNNHFSGKMADGLLSSTLLDVLDVS 358 (487)
Q Consensus 280 ~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~-~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~ 358 (487)
+.++++++.+. .+|..+ ...++.|++++|.+.+.....+. .+++|+.|++++|.+....+..+..+++|+.|+++
T Consensus 21 ~~l~c~~~~l~-~iP~~~---~~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls 96 (361)
T 2xot_A 21 NILSCSKQQLP-NVPQSL---PSYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLS 96 (361)
T ss_dssp TEEECCSSCCS-SCCSSC---CTTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECC
T ss_pred CEEEeCCCCcC-ccCccC---CCCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECC
Confidence 57888888887 788754 35688999999988876666676 88899999999998887777778888889999999
Q ss_pred CCccCCCchhhhcccccccEEecCCccccCcchhhhccCcCCcEEeccCCccccccccc----cCCCcceEEEeeCcccC
Q 036411 359 NNKLSGDIPHWIGNFSVLWLLLMSENYLQGSIPVQLGNLESLEFIDISENGLSVSMVSL----SNLSSVKHIYLHNNAIN 434 (487)
Q Consensus 359 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~----~~~~~L~~L~l~~~~~~ 434 (487)
+|++....+..|..+++|++|++++|.+....+..|..+++|+.|++++|.++..+... ..+++|+.|++++|.++
T Consensus 97 ~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l~ 176 (361)
T 2xot_A 97 SNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLK 176 (361)
T ss_dssp SSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSCCC
T ss_pred CCcCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCCCC
Confidence 99887666677888888888888888888666777888888888888888886555443 35788888888888888
Q ss_pred CcchHhhhccCc--ceEEeCCCCccc
Q 036411 435 GLIPIALLRSST--LLTLDLRDNKFF 458 (487)
Q Consensus 435 ~~~~~~~~~~~~--L~~L~l~~~~~~ 458 (487)
...+..+..++. ++.|++++|++.
T Consensus 177 ~l~~~~~~~l~~~~l~~l~l~~N~~~ 202 (361)
T 2xot_A 177 KLPLTDLQKLPAWVKNGLYLHNNPLE 202 (361)
T ss_dssp CCCHHHHHHSCHHHHTTEECCSSCEE
T ss_pred ccCHHHhhhccHhhcceEEecCCCcc
Confidence 777677777766 377888888875
|
| >4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=99.71 E-value=1e-16 Score=135.89 Aligned_cols=152 Identities=19% Similarity=0.292 Sum_probs=78.9
Q ss_pred hccccCcEEecccccCCCCCchhhhcCCCCCcEEECCCCccCCCCCcCCcCCCCccEEEcCCCcccccccccccCCCccc
Q 036411 274 SEMKELITLDLSRNNFSGELPRSIFSSCLSLETLDLSNNNFYGQLFPNFMNLTHLSSLRLNNNHFSGKMADGLLSSTLLD 353 (487)
Q Consensus 274 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~ 353 (487)
..+++|+.|++++|.+. .++. +..+++|++|++++|.+.. ...+..+++|++|++++|.+.+..+..+..+++|+
T Consensus 41 ~~l~~L~~L~l~~n~i~-~l~~--l~~l~~L~~L~l~~n~~~~--~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~ 115 (197)
T 4ezg_A 41 AQMNSLTYITLANINVT-DLTG--IEYAHNIKDLTINNIHATN--YNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLT 115 (197)
T ss_dssp HHHHTCCEEEEESSCCS-CCTT--GGGCTTCSEEEEESCCCSC--CGGGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCC
T ss_pred hhcCCccEEeccCCCcc-ChHH--HhcCCCCCEEEccCCCCCc--chhhhcCCCCCEEEeECCccCcccChhhcCCCCCC
Confidence 44566666666666665 5552 4556666666666664432 23455556666666666655544455555555566
Q ss_pred EEEccCCccCCCchhhhcccccccEEecCCcc-ccCcchhhhccCcCCcEEeccCCccccccccccCCCcceEEEeeCcc
Q 036411 354 VLDVSNNKLSGDIPHWIGNFSVLWLLLMSENY-LQGSIPVQLGNLESLEFIDISENGLSVSMVSLSNLSSVKHIYLHNNA 432 (487)
Q Consensus 354 ~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~-~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~ 432 (487)
.|++++|++++..+..+..+++|++|++++|. +. ..+ .+..+++|+.|++++|++.... .+..+++|+.|++++|+
T Consensus 116 ~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~-~~~-~l~~l~~L~~L~l~~n~i~~~~-~l~~l~~L~~L~l~~N~ 192 (197)
T 4ezg_A 116 LLDISHSAHDDSILTKINTLPKVNSIDLSYNGAIT-DIM-PLKTLPELKSLNIQFDGVHDYR-GIEDFPKLNQLYAFSQT 192 (197)
T ss_dssp EEECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCC-CCG-GGGGCSSCCEEECTTBCCCCCT-TGGGCSSCCEEEECBC-
T ss_pred EEEecCCccCcHhHHHHhhCCCCCEEEccCCCCcc-ccH-hhcCCCCCCEEECCCCCCcChH-HhccCCCCCEEEeeCcc
Confidence 66666655554445555555555555555554 33 222 3444445555555554443221 33344444444444444
Q ss_pred c
Q 036411 433 I 433 (487)
Q Consensus 433 ~ 433 (487)
+
T Consensus 193 i 193 (197)
T 4ezg_A 193 I 193 (197)
T ss_dssp -
T ss_pred c
Confidence 3
|
| >3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} | Back alignment and structure |
|---|
Probab=99.70 E-value=1.6e-16 Score=137.91 Aligned_cols=155 Identities=19% Similarity=0.109 Sum_probs=120.5
Q ss_pred CCcEEECCCCccCCCCCcCCcCCCCccEEEcCCCcccccccccccCCCcccEEEccCCccCCCchhhhcccccccEEecC
Q 036411 303 SLETLDLSNNNFYGQLFPNFMNLTHLSSLRLNNNHFSGKMADGLLSSTLLDVLDVSNNKLSGDIPHWIGNFSVLWLLLMS 382 (487)
Q Consensus 303 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~ 382 (487)
+.+.++.+++.+... +..+ .++|+.|++++|.+.+..+..+..+++|+.|++++|++....+..+..+++|++|+++
T Consensus 20 s~~~v~c~~~~l~~i-p~~~--~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls 96 (229)
T 3e6j_A 20 SGTTVDCRSKRHASV-PAGI--PTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLG 96 (229)
T ss_dssp ETTEEECTTSCCSSC-CSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred eCCEeEccCCCcCcc-CCCC--CCCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECC
Confidence 467788887776533 3333 2788888888888887777778888888888888888876666677888888888888
Q ss_pred CccccCcchhhhccCcCCcEEeccCCccccccccccCCCcceEEEeeCcccCCcchHhhhccCcceEEeCCCCccccc
Q 036411 383 ENYLQGSIPVQLGNLESLEFIDISENGLSVSMVSLSNLSSVKHIYLHNNAINGLIPIALLRSSTLLTLDLRDNKFFGR 460 (487)
Q Consensus 383 ~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~ 460 (487)
+|.++...+..|..+++|+.|++++|++...+..+..+++|+.|++++|.+....+..+..+++|+.|++++|++.+.
T Consensus 97 ~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~ 174 (229)
T 3e6j_A 97 TNQLTVLPSAVFDRLVHLKELFMCCNKLTELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPWDCE 174 (229)
T ss_dssp SSCCCCCCTTTTTTCTTCCEEECCSSCCCSCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCBCTT
T ss_pred CCcCCccChhHhCcchhhCeEeccCCcccccCcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCCccCC
Confidence 888886666667788888888888888877777777888888888888888877667777788888888888887543
|
| >3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=99.70 E-value=2.1e-17 Score=152.22 Aligned_cols=222 Identities=10% Similarity=0.044 Sum_probs=150.0
Q ss_pred cCceEEEEccCCCCCCCcchhhhccccCcEEecccccCCCCCchhhhcCCCCCcEEECCCCcc----CCCCCcCCcCCCC
Q 036411 252 FQKLIYLDVSKNSFEGNIPYSISEMKELITLDLSRNNFSGELPRSIFSSCLSLETLDLSNNNF----YGQLFPNFMNLTH 327 (487)
Q Consensus 252 ~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~----~~~~~~~~~~~~~ 327 (487)
+++|+++++.+ .++.....+|.++++|+.+++.++.+. .++...|.++.++..+....... ......+|..+..
T Consensus 100 ~~~L~~l~L~~-~i~~I~~~aF~~~~~L~~l~l~~n~i~-~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~~~~ 177 (329)
T 3sb4_A 100 KQTLEKVILSE-KIKNIEDAAFKGCDNLKICQIRKKTAP-NLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFIEGEP 177 (329)
T ss_dssp CTTCCC-CBCT-TCCEECTTTTTTCTTCCEEEBCCSSCC-EECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEEESCC
T ss_pred cCCCcEEECCc-cccchhHHHhhcCcccceEEcCCCCcc-ccchhhhcCCCceEEecCcchhhhhccccccccccccccc
Confidence 56777777776 565555666777777777777777776 67777777766666666554221 1122233445555
Q ss_pred cc-EEEcCCCc-ccccccccccCCCcccEEEccCCccCCCchhhhcccccccEEecCCccccCcchhhhccCcCCcEEec
Q 036411 328 LS-SLRLNNNH-FSGKMADGLLSSTLLDVLDVSNNKLSGDIPHWIGNFSVLWLLLMSENYLQGSIPVQLGNLESLEFIDI 405 (487)
Q Consensus 328 L~-~L~l~~~~-~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l 405 (487)
|+ .+.+.... +............++..+.+.+.-...........|++|+++++.+|.++......|..|++|+.+++
T Consensus 178 L~~~i~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~l~~~~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l 257 (329)
T 3sb4_A 178 LETTIQVGAMGKLEDEIMKAGLQPRDINFLTIEGKLDNADFKLIRDYMPNLVSLDISKTNATTIPDFTFAQKKYLLKIKL 257 (329)
T ss_dssp CEEEEEECTTCCHHHHHHHTTCCGGGCSEEEEEECCCHHHHHHHHHHCTTCCEEECTTBCCCEECTTTTTTCTTCCEEEC
T ss_pred cceeEEecCCCcHHHHHhhcccCccccceEEEeeeecHHHHHHHHHhcCCCeEEECCCCCcceecHhhhhCCCCCCEEEC
Confidence 55 34443321 11111111123445566666554221111112234899999999999888666778999999999999
Q ss_pred cCCccccccccccCCCcce-EEEeeCcccCCcchHhhhccCcceEEeCCCCcccccCcccccccCceeEEec
Q 036411 406 SENGLSVSMVSLSNLSSVK-HIYLHNNAINGLIPIALLRSSTLLTLDLRDNKFFGRIPHQINELSNLHFLLL 476 (487)
Q Consensus 406 ~~~~~~~~~~~~~~~~~L~-~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l 476 (487)
.++-.......|.+|++|+ .+++.+ +++.+.+.+|..|++|+.|+++++.++...+.+|.++++|+.++.
T Consensus 258 ~~ni~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l~l~~n~i~~I~~~aF~~~~~L~~ly~ 328 (329)
T 3sb4_A 258 PHNLKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRYVLATGDKITTLGDELFGNGVPSKLIYK 328 (329)
T ss_dssp CTTCCEECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEEEEECSSCCCEECTTTTCTTCCCCEEEC
T ss_pred CcccceehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCCEEEeCCCccCccchhhhcCCcchhhhcc
Confidence 9883345666778999999 999988 788788889999999999999999998888889999999999874
|
| >4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=99.70 E-value=7.7e-17 Score=136.63 Aligned_cols=132 Identities=20% Similarity=0.216 Sum_probs=72.9
Q ss_pred ccCCCcccEEEccCCccCCCchhhhcccccccEEecCCccccCcchhhhccCcCCcEEeccCCcccc-ccccccCCCcce
Q 036411 346 LLSSTLLDVLDVSNNKLSGDIPHWIGNFSVLWLLLMSENYLQGSIPVQLGNLESLEFIDISENGLSV-SMVSLSNLSSVK 424 (487)
Q Consensus 346 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~-~~~~~~~~~~L~ 424 (487)
+..+++|++|++++|.+. .+..+..+++|++|++++|.+.+..+..+..+++|+.|++++|++.. .+..+..+++|+
T Consensus 62 l~~l~~L~~L~l~~n~~~--~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~ 139 (197)
T 4ezg_A 62 IEYAHNIKDLTINNIHAT--NYNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVN 139 (197)
T ss_dssp GGGCTTCSEEEEESCCCS--CCGGGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEEECCSSBCBGGGHHHHTTCSSCC
T ss_pred HhcCCCCCEEEccCCCCC--cchhhhcCCCCCEEEeECCccCcccChhhcCCCCCCEEEecCCccCcHhHHHHhhCCCCC
Confidence 334444444444444332 11234445555555555555544344455555556666666655542 344445566666
Q ss_pred EEEeeCcc-cCCcchHhhhccCcceEEeCCCCcccccCcccccccCceeEEeccCCccCC
Q 036411 425 HIYLHNNA-INGLIPIALLRSSTLLTLDLRDNKFFGRIPHQINELSNLHFLLLRGNSLQG 483 (487)
Q Consensus 425 ~L~l~~~~-~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~ 483 (487)
+|++++|. ++.. + .+..+++|+.|++++|++++ ++ .+..+++|+.|++++|+|.+
T Consensus 140 ~L~L~~n~~i~~~-~-~l~~l~~L~~L~l~~n~i~~-~~-~l~~l~~L~~L~l~~N~i~~ 195 (197)
T 4ezg_A 140 SIDLSYNGAITDI-M-PLKTLPELKSLNIQFDGVHD-YR-GIEDFPKLNQLYAFSQTIGG 195 (197)
T ss_dssp EEECCSCTBCCCC-G-GGGGCSSCCEEECTTBCCCC-CT-TGGGCSSCCEEEECBC----
T ss_pred EEEccCCCCcccc-H-hhcCCCCCCEEECCCCCCcC-hH-HhccCCCCCEEEeeCcccCC
Confidence 66666665 4433 3 46667777777777777754 22 66777888888888877754
|
| >2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A | Back alignment and structure |
|---|
Probab=99.68 E-value=3.1e-16 Score=135.18 Aligned_cols=132 Identities=23% Similarity=0.255 Sum_probs=61.6
Q ss_pred cCcEEecccccCCCCCchhhhcCCCCCcEEECCCCccCCCCCcCCcCCCCccEEEcCCCcccccccccccCCCcccEEEc
Q 036411 278 ELITLDLSRNNFSGELPRSIFSSCLSLETLDLSNNNFYGQLFPNFMNLTHLSSLRLNNNHFSGKMADGLLSSTLLDVLDV 357 (487)
Q Consensus 278 ~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l 357 (487)
+++.|++++|.+. .++...|..+++|+.|++++|.+.+..+..|..+++|+.|++++|.+.......+..+++|+.|++
T Consensus 33 ~l~~L~l~~n~i~-~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L 111 (220)
T 2v9t_B 33 TITEIRLEQNTIK-VIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKITELPKSLFEGLFSLQLLLL 111 (220)
T ss_dssp TCCEEECCSSCCC-EECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCCEEECCCCcCC-CcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCcCCccCHhHccCCCCCCEEEC
Confidence 3444444444444 333333444444444444444444333444444444444444444444333333444445555555
Q ss_pred cCCccCCCchhhhcccccccEEecCCccccCcchhhhccCcCCcEEeccCCcc
Q 036411 358 SNNKLSGDIPHWIGNFSVLWLLLMSENYLQGSIPVQLGNLESLEFIDISENGL 410 (487)
Q Consensus 358 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~ 410 (487)
++|++.+..+..+..+++|++|++++|.+++..+..+..+++|+.|++++|++
T Consensus 112 ~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~ 164 (220)
T 2v9t_B 112 NANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPF 164 (220)
T ss_dssp CSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCE
T ss_pred CCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCc
Confidence 55555444444455555555555555555443334444455555555555544
|
| >1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=99.68 E-value=4.1e-17 Score=144.78 Aligned_cols=171 Identities=25% Similarity=0.304 Sum_probs=132.3
Q ss_pred ccccCcEEecccccCCCCCchhhhcCCCCCcEEECCCCccCCCCCcCCcCCCCccEEEcCCCcccccccccccCCCcccE
Q 036411 275 EMKELITLDLSRNNFSGELPRSIFSSCLSLETLDLSNNNFYGQLFPNFMNLTHLSSLRLNNNHFSGKMADGLLSSTLLDV 354 (487)
Q Consensus 275 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~ 354 (487)
.+.++..++++++.+. .++. +..+++|+.|++++|.+... +.+..+++|+.|++++|.+.+..+ +..+++|+.
T Consensus 17 ~l~~l~~l~l~~~~i~-~~~~--~~~l~~L~~L~l~~n~i~~l--~~l~~l~~L~~L~L~~N~i~~~~~--l~~l~~L~~ 89 (263)
T 1xeu_A 17 GLANAVKQNLGKQSVT-DLVS--QKELSGVQNFNGDNSNIQSL--AGMQFFTNLKELHLSHNQISDLSP--LKDLTKLEE 89 (263)
T ss_dssp HHHHHHHHHHTCSCTT-SEEC--HHHHTTCSEEECTTSCCCCC--TTGGGCTTCCEEECCSSCCCCCGG--GTTCSSCCE
T ss_pred HHHHHHHHHhcCCCcc-cccc--hhhcCcCcEEECcCCCcccc--hHHhhCCCCCEEECCCCccCCChh--hccCCCCCE
Confidence 4566777788888887 5552 56788999999999988653 267788999999999998875444 778899999
Q ss_pred EEccCCccCCCchhhhcccccccEEecCCccccCcchhhhccCcCCcEEeccCCccccccccccCCCcceEEEeeCcccC
Q 036411 355 LDVSNNKLSGDIPHWIGNFSVLWLLLMSENYLQGSIPVQLGNLESLEFIDISENGLSVSMVSLSNLSSVKHIYLHNNAIN 434 (487)
Q Consensus 355 L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 434 (487)
|++++|++++. +. +.. ++|++|++++|.+++. ..+..+++|+.|++++|+++.. ..+..+++|+.|++++|.++
T Consensus 90 L~L~~N~l~~l-~~-~~~-~~L~~L~L~~N~l~~~--~~l~~l~~L~~L~Ls~N~i~~~-~~l~~l~~L~~L~L~~N~i~ 163 (263)
T 1xeu_A 90 LSVNRNRLKNL-NG-IPS-ACLSRLFLDNNELRDT--DSLIHLKNLEILSIRNNKLKSI-VMLGFLSKLEVLDLHGNEIT 163 (263)
T ss_dssp EECCSSCCSCC-TT-CCC-SSCCEEECCSSCCSBS--GGGTTCTTCCEEECTTSCCCBC-GGGGGCTTCCEEECTTSCCC
T ss_pred EECCCCccCCc-Cc-ccc-CcccEEEccCCccCCC--hhhcCcccccEEECCCCcCCCC-hHHccCCCCCEEECCCCcCc
Confidence 99999988753 32 222 8888999998888743 3577888888888888888754 46777888888888888887
Q ss_pred CcchHhhhccCcceEEeCCCCccccc
Q 036411 435 GLIPIALLRSSTLLTLDLRDNKFFGR 460 (487)
Q Consensus 435 ~~~~~~~~~~~~L~~L~l~~~~~~~~ 460 (487)
+. ..+..+++|+.|++++|++++.
T Consensus 164 ~~--~~l~~l~~L~~L~l~~N~~~~~ 187 (263)
T 1xeu_A 164 NT--GGLTRLKKVNWIDLTGQKCVNE 187 (263)
T ss_dssp BC--TTSTTCCCCCEEEEEEEEEECC
T ss_pred ch--HHhccCCCCCEEeCCCCcccCC
Confidence 65 5677788888888888887644
|
| >2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.68 E-value=3.6e-16 Score=134.79 Aligned_cols=111 Identities=17% Similarity=0.175 Sum_probs=44.0
Q ss_pred cCCCCCcEEECCCCccCCCCCcCCcCCCCccEEEcCCCcccccccccccCCCcccEEEccCCccCCCchhhhcccccccE
Q 036411 299 SSCLSLETLDLSNNNFYGQLFPNFMNLTHLSSLRLNNNHFSGKMADGLLSSTLLDVLDVSNNKLSGDIPHWIGNFSVLWL 378 (487)
Q Consensus 299 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~ 378 (487)
..+++|+.|++++|.+.+..+..|..+++|++|++++|.+.+..+..+..+++|++|++++|++++..+..+..+++|++
T Consensus 54 ~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~ 133 (220)
T 2v70_A 54 KKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRL 133 (220)
T ss_dssp GGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSE
T ss_pred ccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCCccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCE
Confidence 33334444444443333332233333333444444443333333333333444444444444443333333444444444
Q ss_pred EecCCccccCcchhhhccCcCCcEEeccCCc
Q 036411 379 LLMSENYLQGSIPVQLGNLESLEFIDISENG 409 (487)
Q Consensus 379 L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~ 409 (487)
|++++|.+++..+..|..+++|+.|++++|+
T Consensus 134 L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~ 164 (220)
T 2v70_A 134 LSLYDNQITTVAPGAFDTLHSLSTLNLLANP 164 (220)
T ss_dssp EECTTSCCCCBCTTTTTTCTTCCEEECCSCC
T ss_pred EECCCCcCCEECHHHhcCCCCCCEEEecCcC
Confidence 4444444443333334444444444444443
|
| >3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} | Back alignment and structure |
|---|
Probab=99.68 E-value=7.7e-16 Score=133.67 Aligned_cols=155 Identities=25% Similarity=0.249 Sum_probs=136.1
Q ss_pred cCcEEecccccCCCCCchhhhcCCCCCcEEECCCCccCCCCCcCCcCCCCccEEEcCCCcccccccccccCCCcccEEEc
Q 036411 278 ELITLDLSRNNFSGELPRSIFSSCLSLETLDLSNNNFYGQLFPNFMNLTHLSSLRLNNNHFSGKMADGLLSSTLLDVLDV 357 (487)
Q Consensus 278 ~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l 357 (487)
.-+.++.+++.+. .+|..+ .++|++|++++|.+.+..+..+..+++|+.|++++|.+.......+..+++|+.|++
T Consensus 20 s~~~v~c~~~~l~-~ip~~~---~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~L 95 (229)
T 3e6j_A 20 SGTTVDCRSKRHA-SVPAGI---PTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDL 95 (229)
T ss_dssp ETTEEECTTSCCS-SCCSCC---CTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred eCCEeEccCCCcC-ccCCCC---CCCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEEC
Confidence 3567899988887 888754 489999999999999887888999999999999999998666677889999999999
Q ss_pred cCCccCCCchhhhcccccccEEecCCccccCcchhhhccCcCCcEEeccCCccccccc-cccCCCcceEEEeeCcccCCc
Q 036411 358 SNNKLSGDIPHWIGNFSVLWLLLMSENYLQGSIPVQLGNLESLEFIDISENGLSVSMV-SLSNLSSVKHIYLHNNAINGL 436 (487)
Q Consensus 358 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~-~~~~~~~L~~L~l~~~~~~~~ 436 (487)
++|++++..+..+..+++|++|++++|.+. ..|..+..+++|+.|++++|++..... .+..+++|+.|++.+|.+...
T Consensus 96 s~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~ 174 (229)
T 3e6j_A 96 GTNQLTVLPSAVFDRLVHLKELFMCCNKLT-ELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPWDCE 174 (229)
T ss_dssp CSSCCCCCCTTTTTTCTTCCEEECCSSCCC-SCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCBCTT
T ss_pred CCCcCCccChhHhCcchhhCeEeccCCccc-ccCcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCCccCC
Confidence 999999777788899999999999999998 678888999999999999999975553 466899999999999998865
Q ss_pred c
Q 036411 437 I 437 (487)
Q Consensus 437 ~ 437 (487)
.
T Consensus 175 c 175 (229)
T 3e6j_A 175 C 175 (229)
T ss_dssp B
T ss_pred c
Confidence 3
|
| >3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=99.67 E-value=8.4e-17 Score=148.21 Aligned_cols=288 Identities=15% Similarity=0.101 Sum_probs=141.0
Q ss_pred cccccEEecCCccccccccccccC-CCCCcEEEccCccccCCcccccccCCCCCcEEECCCCccCCCcchhccC------
Q 036411 7 LKQLKILNLGFNFFIDSILPYLNT-LTSLTTLNLRYNKIEGSRTKQGICNLKNLLELDLSSNNFEGHLPQCLNN------ 79 (487)
Q Consensus 7 ~~~L~~L~l~~~~~~~~~~~~~~~-~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~------ 79 (487)
+.+++.|.+.++ +.......+.. +++|++|+++++.+...... -...+.++.+.+..+.+. ...|.+
T Consensus 24 ~~~l~~L~l~g~-i~~~~~~~l~~~l~~L~~LdLs~n~i~~~~~~--~~~~~~~~~~~~~~~~I~---~~aF~~~~~~~~ 97 (329)
T 3sb4_A 24 ANSITHLTLTGK-LNAEDFRHLRDEFPSLKVLDISNAEIKMYSGK--AGTYPNGKFYIYMANFVP---AYAFSNVVNGVT 97 (329)
T ss_dssp HHHCSEEEEEEE-ECHHHHHHHHHSCTTCCEEEEEEEEECCEEES--SSSSGGGCCEEECTTEEC---TTTTEEEETTEE
T ss_pred hCceeEEEEecc-ccHHHHHHHHHhhccCeEEecCcceeEEecCc--cccccccccccccccccC---HHHhcccccccc
Confidence 567888888865 33233334444 78999999999987611111 112222444444444332 244555
Q ss_pred --CCCccEEeccCccccCCccccccCCCCCcEEeccccccCcchhHHHhhccccceEEEeccCC---CccccccccccCC
Q 036411 80 --LTHLKVLDISYNQLSGNFPSVLTNLTSLEYLDLSFIDFQGTFLINSLANHSKLEVLVLSSGN---DMLQVKTENWLPT 154 (487)
Q Consensus 80 --l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~l~l~~~~---~~~~~~~~~~~~~ 154 (487)
|++|+++++.+ .++.....+|..|++|+.++++++.+. ......|..+.++..+...... ....+...++..+
T Consensus 98 ~g~~~L~~l~L~~-~i~~I~~~aF~~~~~L~~l~l~~n~i~-~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~~ 175 (329)
T 3sb4_A 98 KGKQTLEKVILSE-KIKNIEDAAFKGCDNLKICQIRKKTAP-NLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFIEG 175 (329)
T ss_dssp EECTTCCC-CBCT-TCCEECTTTTTTCTTCCEEEBCCSSCC-EECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEEES
T ss_pred cccCCCcEEECCc-cccchhHHHhhcCcccceEEcCCCCcc-ccchhhhcCCCceEEecCcchhhhhccccccccccccc
Confidence 77777777777 666555667777777777777766554 2223344444444443332110 1111222233333
Q ss_pred CCCceeecccccccccccccccCCcccEEeCCCCcccCCcchHhhhc---CCCCcEEEcccCCCCCCCCCCCCcCCCCCc
Q 036411 155 YPLKVLQLSHCHLNVNSSFLLHQHHLKFLDLSHNQLVGNFPTWLLQN---NTGLEVLILWNNSFSGILPRLPNAKYDKLR 231 (487)
Q Consensus 155 ~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~---~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~ 231 (487)
..|+. .+.+.... .++..++.. ..+++.+.+.+.-..... ......+++|+
T Consensus 176 ~~L~~----------------------~i~~~~~~---~l~~~~~~~~~~~~~~~~l~~~~~l~~~~~-~~l~~~~~~L~ 229 (329)
T 3sb4_A 176 EPLET----------------------TIQVGAMG---KLEDEIMKAGLQPRDINFLTIEGKLDNADF-KLIRDYMPNLV 229 (329)
T ss_dssp CCCEE----------------------EEEECTTC---CHHHHHHHTTCCGGGCSEEEEEECCCHHHH-HHHHHHCTTCC
T ss_pred cccce----------------------eEEecCCC---cHHHHHhhcccCccccceEEEeeeecHHHH-HHHHHhcCCCe
Confidence 33331 22221111 112211111 122333333221100000 00001234555
Q ss_pred EEEccCCcccccCCcccccccCceEEEEccCCCCCCCcchhhhccccCc-EEecccccCCCCCchhhhcCCCCCcEEECC
Q 036411 232 HLDISTNNFSGKLPENLGIVFQKLIYLDVSKNSFEGNIPYSISEMKELI-TLDLSRNNFSGELPRSIFSSCLSLETLDLS 310 (487)
Q Consensus 232 ~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~-~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~ 310 (487)
.+++..+.+. .++...+..+.+|+++++.++ +......+|.++++|+ .+++.+ .+. .++...|.+|++|+.+++.
T Consensus 230 ~l~L~~n~i~-~I~~~aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~-~I~~~aF~~c~~L~~l~l~ 305 (329)
T 3sb4_A 230 SLDISKTNAT-TIPDFTFAQKKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA-SVT-AIEFGAFMGCDNLRYVLAT 305 (329)
T ss_dssp EEECTTBCCC-EECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEEECT-TCC-EECTTTTTTCTTEEEEEEC
T ss_pred EEECCCCCcc-eecHhhhhCCCCCCEEECCcc-cceehHHHhhCChhccEEEEEcc-cce-EEchhhhhCCccCCEEEeC
Confidence 5555555444 444444444555666666554 4434455566666666 666665 444 5666666666666666666
Q ss_pred CCccCCCCCcCCcCCCCccEEE
Q 036411 311 NNNFYGQLFPNFMNLTHLSSLR 332 (487)
Q Consensus 311 ~~~~~~~~~~~~~~~~~L~~L~ 332 (487)
++.+......+|..+++|+.++
T Consensus 306 ~n~i~~I~~~aF~~~~~L~~ly 327 (329)
T 3sb4_A 306 GDKITTLGDELFGNGVPSKLIY 327 (329)
T ss_dssp SSCCCEECTTTTCTTCCCCEEE
T ss_pred CCccCccchhhhcCCcchhhhc
Confidence 6666555555666666666654
|
| >1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=99.67 E-value=1.3e-16 Score=141.63 Aligned_cols=150 Identities=24% Similarity=0.279 Sum_probs=66.5
Q ss_pred hhccccCcEEecccccCCCCCchhhhcCCCCCcEEECCCCccCCCCCcCCcCCCCccEEEcCCCcccccccccccCCCcc
Q 036411 273 ISEMKELITLDLSRNNFSGELPRSIFSSCLSLETLDLSNNNFYGQLFPNFMNLTHLSSLRLNNNHFSGKMADGLLSSTLL 352 (487)
Q Consensus 273 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L 352 (487)
+..+++|+.|++++|.+. .++ .+..+++|+.|++++|.+.+..+ +..+++|+.|++++|.+.+. +. +.. ++|
T Consensus 37 ~~~l~~L~~L~l~~n~i~-~l~--~l~~l~~L~~L~L~~N~i~~~~~--l~~l~~L~~L~L~~N~l~~l-~~-~~~-~~L 108 (263)
T 1xeu_A 37 QKELSGVQNFNGDNSNIQ-SLA--GMQFFTNLKELHLSHNQISDLSP--LKDLTKLEELSVNRNRLKNL-NG-IPS-ACL 108 (263)
T ss_dssp HHHHTTCSEEECTTSCCC-CCT--TGGGCTTCCEEECCSSCCCCCGG--GTTCSSCCEEECCSSCCSCC-TT-CCC-SSC
T ss_pred hhhcCcCcEEECcCCCcc-cch--HHhhCCCCCEEECCCCccCCChh--hccCCCCCEEECCCCccCCc-Cc-ccc-Ccc
Confidence 334444444444444443 333 13344444444444444433221 44444444444444444321 11 111 445
Q ss_pred cEEEccCCccCCCchhhhcccccccEEecCCccccCcchhhhccCcCCcEEeccCCccccccccccCCCcceEEEeeCcc
Q 036411 353 DVLDVSNNKLSGDIPHWIGNFSVLWLLLMSENYLQGSIPVQLGNLESLEFIDISENGLSVSMVSLSNLSSVKHIYLHNNA 432 (487)
Q Consensus 353 ~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~ 432 (487)
+.|++++|++++. ..+..+++|++|++++|.+++. + .+..+++|+.|++++|++... ..+..+++|+.|++++|.
T Consensus 109 ~~L~L~~N~l~~~--~~l~~l~~L~~L~Ls~N~i~~~-~-~l~~l~~L~~L~L~~N~i~~~-~~l~~l~~L~~L~l~~N~ 183 (263)
T 1xeu_A 109 SRLFLDNNELRDT--DSLIHLKNLEILSIRNNKLKSI-V-MLGFLSKLEVLDLHGNEITNT-GGLTRLKKVNWIDLTGQK 183 (263)
T ss_dssp CEEECCSSCCSBS--GGGTTCTTCCEEECTTSCCCBC-G-GGGGCTTCCEEECTTSCCCBC-TTSTTCCCCCEEEEEEEE
T ss_pred cEEEccCCccCCC--hhhcCcccccEEECCCCcCCCC-h-HHccCCCCCEEECCCCcCcch-HHhccCCCCCEEeCCCCc
Confidence 5555555544422 1344455555555555554422 1 344455555555555555433 344445555555555555
Q ss_pred cCC
Q 036411 433 ING 435 (487)
Q Consensus 433 ~~~ 435 (487)
+..
T Consensus 184 ~~~ 186 (263)
T 1xeu_A 184 CVN 186 (263)
T ss_dssp EEC
T ss_pred ccC
Confidence 443
|
| >4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A | Back alignment and structure |
|---|
Probab=99.66 E-value=2.1e-15 Score=141.64 Aligned_cols=240 Identities=11% Similarity=0.083 Sum_probs=158.4
Q ss_pred CCcEEEccCCcccccCCcccccccCceEEEEccCCCCCCCcchhhhccccCcEEecccccCCCCCchhhhcCCCCCcEEE
Q 036411 229 KLRHLDISTNNFSGKLPENLGIVFQKLIYLDVSKNSFEGNIPYSISEMKELITLDLSRNNFSGELPRSIFSSCLSLETLD 308 (487)
Q Consensus 229 ~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~ 308 (487)
+|+.+.+..+ +. .+....+.. .+|+.+.+.. .+......+|.+|++|+.+++.++.+. .++...|. +.+|+.+.
T Consensus 136 ~L~~i~l~~~-i~-~I~~~aF~~-~~L~~i~lp~-~l~~I~~~aF~~c~~L~~l~l~~n~l~-~I~~~aF~-~~~L~~l~ 209 (401)
T 4fdw_A 136 QIAKVVLNEG-LK-SIGDMAFFN-STVQEIVFPS-TLEQLKEDIFYYCYNLKKADLSKTKIT-KLPASTFV-YAGIEEVL 209 (401)
T ss_dssp CCSEEECCTT-CC-EECTTTTTT-CCCCEEECCT-TCCEECSSTTTTCTTCCEEECTTSCCS-EECTTTTT-TCCCSEEE
T ss_pred CccEEEeCCC-cc-EECHHhcCC-CCceEEEeCC-CccEehHHHhhCcccCCeeecCCCcce-EechhhEe-ecccCEEE
Confidence 4555555443 22 222222222 3566666664 344345556777777777777777776 67777776 57777777
Q ss_pred CCCCccCCCCCcCCcCCCCccEEEcCCCcccccccccccCCCcccEEEccCCccCCCchhhhcccccccEEecCCcccc-
Q 036411 309 LSNNNFYGQLFPNFMNLTHLSSLRLNNNHFSGKMADGLLSSTLLDVLDVSNNKLSGDIPHWIGNFSVLWLLLMSENYLQ- 387 (487)
Q Consensus 309 l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~- 387 (487)
+.++ +......+|..+++|+.+++.++ +......+|.+ .+|+.+.+.. .+.......|.+|++|+.+.+.++.+.
T Consensus 210 lp~~-l~~I~~~aF~~~~~L~~l~l~~~-l~~I~~~aF~~-~~L~~i~lp~-~i~~I~~~aF~~c~~L~~l~l~~~~~~~ 285 (401)
T 4fdw_A 210 LPVT-LKEIGSQAFLKTSQLKTIEIPEN-VSTIGQEAFRE-SGITTVKLPN-GVTNIASRAFYYCPELAEVTTYGSTFND 285 (401)
T ss_dssp CCTT-CCEECTTTTTTCTTCCCEECCTT-CCEECTTTTTT-CCCSEEEEET-TCCEECTTTTTTCTTCCEEEEESSCCCC
T ss_pred eCCc-hheehhhHhhCCCCCCEEecCCC-ccCcccccccc-CCccEEEeCC-CccEEChhHhhCCCCCCEEEeCCccccC
Confidence 7644 44445566777777777777664 34344555555 6777777743 344455667778888888887776543
Q ss_pred ----CcchhhhccCcCCcEEeccCCccccccccccCCCcceEEEeeCcccCCcchHhhhccCcceEEeCCCCcccccCcc
Q 036411 388 ----GSIPVQLGNLESLEFIDISENGLSVSMVSLSNLSSVKHIYLHNNAINGLIPIALLRSSTLLTLDLRDNKFFGRIPH 463 (487)
Q Consensus 388 ----~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~ 463 (487)
......|..|++|+.+.+.++--......|.+|++|+.+++.++ ++.+...+|..| +|+.+++.+|........
T Consensus 286 ~~~~~I~~~aF~~c~~L~~l~l~~~i~~I~~~aF~~c~~L~~l~lp~~-l~~I~~~aF~~~-~L~~l~l~~n~~~~l~~~ 363 (401)
T 4fdw_A 286 DPEAMIHPYCLEGCPKLARFEIPESIRILGQGLLGGNRKVTQLTIPAN-VTQINFSAFNNT-GIKEVKVEGTTPPQVFEK 363 (401)
T ss_dssp CTTCEECTTTTTTCTTCCEECCCTTCCEECTTTTTTCCSCCEEEECTT-CCEECTTSSSSS-CCCEEEECCSSCCBCCCS
T ss_pred CcccEECHHHhhCCccCCeEEeCCceEEEhhhhhcCCCCccEEEECcc-ccEEcHHhCCCC-CCCEEEEcCCCCcccccc
Confidence 24556788888888888875422445566678888888888544 666667788888 899999888887766667
Q ss_pred cccccC-ceeEEeccCCc
Q 036411 464 QINELS-NLHFLLLRGNS 480 (487)
Q Consensus 464 ~l~~l~-~L~~L~l~~~~ 480 (487)
.|..++ +++.|++..+.
T Consensus 364 ~F~~~~~~l~~l~vp~~~ 381 (401)
T 4fdw_A 364 VWYGFPDDITVIRVPAES 381 (401)
T ss_dssp SCCCSCTTCCEEEECGGG
T ss_pred cccCCCCCccEEEeCHHH
Confidence 788775 78888877654
|
| >2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A | Back alignment and structure |
|---|
Probab=99.62 E-value=1.1e-15 Score=126.02 Aligned_cols=132 Identities=21% Similarity=0.189 Sum_probs=80.0
Q ss_pred CcccEEEccCCccC-CCchhhhcccccccEEecCCccccCcchhhhccCcCCcEEeccCCcccc-ccccccCCCcceEEE
Q 036411 350 TLLDVLDVSNNKLS-GDIPHWIGNFSVLWLLLMSENYLQGSIPVQLGNLESLEFIDISENGLSV-SMVSLSNLSSVKHIY 427 (487)
Q Consensus 350 ~~L~~L~l~~~~~~-~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~-~~~~~~~~~~L~~L~ 427 (487)
++|+.|++++|.++ +.+|..+..+++|++|++++|.+... ..+..+++|+.|++++|.+.. .+..+..+++|++|+
T Consensus 24 ~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ 101 (168)
T 2ell_A 24 AAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLN 101 (168)
T ss_dssp TSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEEE
T ss_pred ccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEEe
Confidence 45566666666554 34455555666666666666665533 455566666666666666654 233333466677777
Q ss_pred eeCcccCCcch-HhhhccCcceEEeCCCCcccccCc---ccccccCceeEEeccCCccCC
Q 036411 428 LHNNAINGLIP-IALLRSSTLLTLDLRDNKFFGRIP---HQINELSNLHFLLLRGNSLQG 483 (487)
Q Consensus 428 l~~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~~~---~~l~~l~~L~~L~l~~~~~~~ 483 (487)
+++|.+++... ..+..+++|+.|++++|++++..+ ..+..+++|++|++++|++.+
T Consensus 102 Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~~ 161 (168)
T 2ell_A 102 LSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQE 161 (168)
T ss_dssp CBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTSCB
T ss_pred ccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCChhh
Confidence 77776665432 456666777777777777654443 366677777777777776653
|
| >4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A | Back alignment and structure |
|---|
Probab=99.61 E-value=1.2e-14 Score=136.50 Aligned_cols=241 Identities=11% Similarity=0.109 Sum_probs=188.9
Q ss_pred CCCcEEEccCCcccccCCcccccccCceEEEEccCCCCCCCcchhhhccccCcEEecccccCCCCCchhhhcCCCCCcEE
Q 036411 228 DKLRHLDISTNNFSGKLPENLGIVFQKLIYLDVSKNSFEGNIPYSISEMKELITLDLSRNNFSGELPRSIFSSCLSLETL 307 (487)
Q Consensus 228 ~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L 307 (487)
..++.+.+... +. .+....+.. .+|+.+.+..+ +......+|.++ +|+.+.+.+ .+. .++...|.+|.+|+.+
T Consensus 113 ~~l~~i~ip~~-i~-~I~~~aF~~-~~L~~i~l~~~-i~~I~~~aF~~~-~L~~i~lp~-~l~-~I~~~aF~~c~~L~~l 185 (401)
T 4fdw_A 113 KGYNEIILPNS-VK-SIPKDAFRN-SQIAKVVLNEG-LKSIGDMAFFNS-TVQEIVFPS-TLE-QLKEDIFYYCYNLKKA 185 (401)
T ss_dssp SSCSEEECCTT-CC-EECTTTTTT-CCCSEEECCTT-CCEECTTTTTTC-CCCEEECCT-TCC-EECSSTTTTCTTCCEE
T ss_pred CCccEEEECCc-cC-EehHhhccc-CCccEEEeCCC-ccEECHHhcCCC-CceEEEeCC-Ccc-EehHHHhhCcccCCee
Confidence 44555555442 22 233333333 37999999776 554666677775 799999986 665 7888889999999999
Q ss_pred ECCCCccCCCCCcCCcCCCCccEEEcCCCcccccccccccCCCcccEEEccCCccCCCchhhhcccccccEEecCCcccc
Q 036411 308 DLSNNNFYGQLFPNFMNLTHLSSLRLNNNHFSGKMADGLLSSTLLDVLDVSNNKLSGDIPHWIGNFSVLWLLLMSENYLQ 387 (487)
Q Consensus 308 ~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 387 (487)
++.+|.+.......|. +.+|+.+.+.++ +......+|.+|++|+.+++..+ ++.....+|.+ .+|+.+.+. +.+.
T Consensus 186 ~l~~n~l~~I~~~aF~-~~~L~~l~lp~~-l~~I~~~aF~~~~~L~~l~l~~~-l~~I~~~aF~~-~~L~~i~lp-~~i~ 260 (401)
T 4fdw_A 186 DLSKTKITKLPASTFV-YAGIEEVLLPVT-LKEIGSQAFLKTSQLKTIEIPEN-VSTIGQEAFRE-SGITTVKLP-NGVT 260 (401)
T ss_dssp ECTTSCCSEECTTTTT-TCCCSEEECCTT-CCEECTTTTTTCTTCCCEECCTT-CCEECTTTTTT-CCCSEEEEE-TTCC
T ss_pred ecCCCcceEechhhEe-ecccCEEEeCCc-hheehhhHhhCCCCCCEEecCCC-ccCcccccccc-CCccEEEeC-CCcc
Confidence 9999888766566665 689999999855 66577888999999999999875 44455667777 789999995 4455
Q ss_pred CcchhhhccCcCCcEEeccCCccc------cccccccCCCcceEEEeeCcccCCcchHhhhccCcceEEeCCCCcccccC
Q 036411 388 GSIPVQLGNLESLEFIDISENGLS------VSMVSLSNLSSVKHIYLHNNAINGLIPIALLRSSTLLTLDLRDNKFFGRI 461 (487)
Q Consensus 388 ~~~~~~~~~~~~L~~l~l~~~~~~------~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~ 461 (487)
......|..|++|+.+++.++... .....|.+|++|+.+++. +.++.+...+|..|++|+.+.|.++ ++...
T Consensus 261 ~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~-~~i~~I~~~aF~~c~~L~~l~lp~~-l~~I~ 338 (401)
T 4fdw_A 261 NIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIP-ESIRILGQGLLGGNRKVTQLTIPAN-VTQIN 338 (401)
T ss_dssp EECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCC-TTCCEECTTTTTTCCSCCEEEECTT-CCEEC
T ss_pred EEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeC-CceEEEhhhhhcCCCCccEEEECcc-ccEEc
Confidence 466778999999999999988764 667788899999999998 4577788889999999999999765 66677
Q ss_pred cccccccCceeEEeccCCccCC
Q 036411 462 PHQINELSNLHFLLLRGNSLQG 483 (487)
Q Consensus 462 ~~~l~~l~~L~~L~l~~~~~~~ 483 (487)
..+|.++ +|+.+++.+|....
T Consensus 339 ~~aF~~~-~L~~l~l~~n~~~~ 359 (401)
T 4fdw_A 339 FSAFNNT-GIKEVKVEGTTPPQ 359 (401)
T ss_dssp TTSSSSS-CCCEEEECCSSCCB
T ss_pred HHhCCCC-CCCEEEEcCCCCcc
Confidence 7899999 99999999987553
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* | Back alignment and structure |
|---|
Probab=99.61 E-value=5.5e-18 Score=166.47 Aligned_cols=122 Identities=23% Similarity=0.322 Sum_probs=102.5
Q ss_pred cccEEEccCCccCCCchhhhcccccccEEecCCccccCcchhhhccCcCCcEEeccCCccccccccccCCCcceEEEeeC
Q 036411 351 LLDVLDVSNNKLSGDIPHWIGNFSVLWLLLMSENYLQGSIPVQLGNLESLEFIDISENGLSVSMVSLSNLSSVKHIYLHN 430 (487)
Q Consensus 351 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~ 430 (487)
.|+.|++++|.+++ +|. ++.+++|+.|++++|.++ .+|..+..+++|+.|++++|.++..+ .+..+++|+.|++++
T Consensus 442 ~L~~L~Ls~n~l~~-lp~-~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~~lp-~l~~l~~L~~L~Ls~ 517 (567)
T 1dce_A 442 DVRVLHLAHKDLTV-LCH-LEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALENVD-GVANLPRLQELLLCN 517 (567)
T ss_dssp TCSEEECTTSCCSS-CCC-GGGGTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCCCG-GGTTCSSCCEEECCS
T ss_pred CceEEEecCCCCCC-CcC-ccccccCcEeecCccccc-ccchhhhcCCCCCEEECCCCCCCCCc-ccCCCCCCcEEECCC
Confidence 48899999998875 565 888999999999999988 77888899999999999999988654 788899999999999
Q ss_pred cccCCcc-hHhhhccCcceEEeCCCCcccccCcc---cccccCceeEEec
Q 036411 431 NAINGLI-PIALLRSSTLLTLDLRDNKFFGRIPH---QINELSNLHFLLL 476 (487)
Q Consensus 431 ~~~~~~~-~~~~~~~~~L~~L~l~~~~~~~~~~~---~l~~l~~L~~L~l 476 (487)
|.+++.. |..+..+++|+.|++++|++++..+. .+..+|+|+.|++
T Consensus 518 N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~l~~~lp~L~~L~l 567 (567)
T 1dce_A 518 NRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSILT 567 (567)
T ss_dssp SCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCSEEEC
T ss_pred CCCCCCCCcHHHhcCCCCCEEEecCCcCCCCccHHHHHHHHCcccCccCC
Confidence 9998876 88888999999999999998765443 3455899998864
|
| >4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165} | Back alignment and structure |
|---|
Probab=99.61 E-value=7.4e-14 Score=131.88 Aligned_cols=334 Identities=10% Similarity=0.076 Sum_probs=174.6
Q ss_pred ccccccccCCC-CCcEEEccCccccCCcccccccCCCCCcEEECCCCc---cCCCcchhccCCCCccEEeccCccccCCc
Q 036411 22 DSILPYLNTLT-SLTTLNLRYNKIEGSRTKQGICNLKNLLELDLSSNN---FEGHLPQCLNNLTHLKVLDISYNQLSGNF 97 (487)
Q Consensus 22 ~~~~~~~~~~~-~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~---~~~~~~~~~~~l~~L~~L~l~~~~~~~~~ 97 (487)
.+...+|..+. .|+.+.+.+. ++ .+...+|.+|.+|+.+.+..+. +......+|.+|.+|+.+.+..+ ++...
T Consensus 53 ~Ig~~aF~~~~~~L~sI~iP~s-vt-~Ig~~AF~~C~~L~~i~~~~n~p~~l~~Ig~~aF~~c~~L~~i~~~~~-~~~I~ 129 (394)
T 4gt6_A 53 KIGDRVFCNYKYVLTSVQIPDT-VT-EIGSNAFYNCTSLKRVTIQDNKPSCVKKIGRQAFMFCSELTDIPILDS-VTEID 129 (394)
T ss_dssp EECTTTTTTCCSCCCEEEECTT-CC-EECTTTTTTCTTCCEEEEGGGCCCCCCEECTTTTTTCTTCCBCGGGTT-CSEEC
T ss_pred EcCHhhccCCCCcCEEEEECCC-ee-EEhHHHhhCCccCceEeecCCCCCeeeEechhhchhcccceeeccCCc-cceeh
Confidence 34455677764 5888888765 32 3556778888888888886542 44444567888888888777554 44445
Q ss_pred cccccCCCCCcEEeccccccCcchhHHHhhccccceEEEeccCCCccccccccccCCCCCceeecccccccccccccccC
Q 036411 98 PSVLTNLTSLEYLDLSFIDFQGTFLINSLANHSKLEVLVLSSGNDMLQVKTENWLPTYPLKVLQLSHCHLNVNSSFLLHQ 177 (487)
Q Consensus 98 ~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~ 177 (487)
...|..|.+|+.+.+.... .......+..+..|+.+.+. ..+..+...+|.. ..|+.+.+...........+..+
T Consensus 130 ~~aF~~c~~L~~i~lp~~~--~~I~~~~F~~c~~L~~i~~~--~~~~~I~~~aF~~-~~l~~i~ip~~~~~i~~~af~~c 204 (394)
T 4gt6_A 130 SEAFHHCEELDTVTIPEGV--TSVADGMFSYCYSLHTVTLP--DSVTAIEERAFTG-TALTQIHIPAKVTRIGTNAFSEC 204 (394)
T ss_dssp TTTTTTCTTCCEEECCTTC--CEECTTTTTTCTTCCEEECC--TTCCEECTTTTTT-CCCSEEEECTTCCEECTTTTTTC
T ss_pred hhhhhhhccccccccccee--eeecccceeccccccccccc--ceeeEeccccccc-cceeEEEECCcccccccchhhhc
Confidence 5677788888888886431 12223445556666665552 2334444444433 34555555443333333334444
Q ss_pred CcccEEeCCCCcccCCcchHhhhcCCCCcEEEcccCCCCCCCCCCCCcCCCCCcEEEccCCcccccCCcccccccCceEE
Q 036411 178 HHLKFLDLSHNQLVGNFPTWLLQNNTGLEVLILWNNSFSGILPRLPNAKYDKLRHLDISTNNFSGKLPENLGIVFQKLIY 257 (487)
Q Consensus 178 ~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~ 257 (487)
..++......... ...... ............... + ....+..
T Consensus 205 ~~l~~~~~~~~~~-------------------------~~~~~~-~~~~~~~~~~~~~~~-------~-----~~~~~~~ 246 (394)
T 4gt6_A 205 FALSTITSDSESY-------------------------PAIDNV-LYEKSANGDYALIRY-------P-----SQREDPA 246 (394)
T ss_dssp TTCCEEEECCSSS-------------------------CBSSSC-EEEECTTSCEEEEEC-------C-----TTCCCSE
T ss_pred cccceeccccccc-------------------------ccccce-eeccccccccccccc-------c-----cccccce
Confidence 4444443322211 110000 000000000000000 0 0011222
Q ss_pred EEccCCCCCCCcchhhhccccCcEEecccccCCCCCchhhhcCCCCCcEEECCCCccCCCCCcCCcCCCCccEEEcCCCc
Q 036411 258 LDVSKNSFEGNIPYSISEMKELITLDLSRNNFSGELPRSIFSSCLSLETLDLSNNNFYGQLFPNFMNLTHLSSLRLNNNH 337 (487)
Q Consensus 258 L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 337 (487)
+.+... +......+|..+..|+.+.+.+... .++...|.++.+|+.+.+.. .+......+|..+.+|+.+.+.++
T Consensus 247 ~~ip~~-v~~i~~~aF~~c~~L~~i~lp~~~~--~I~~~aF~~c~~L~~i~l~~-~i~~I~~~aF~~c~~L~~i~lp~~- 321 (394)
T 4gt6_A 247 FKIPNG-VARIETHAFDSCAYLASVKMPDSVV--SIGTGAFMNCPALQDIEFSS-RITELPESVFAGCISLKSIDIPEG- 321 (394)
T ss_dssp EECCTT-EEEECTTTTTTCSSCCEEECCTTCC--EECTTTTTTCTTCCEEECCT-TCCEECTTTTTTCTTCCEEECCTT-
T ss_pred EEcCCc-ceEcccceeeecccccEEecccccc--eecCcccccccccccccCCC-cccccCceeecCCCCcCEEEeCCc-
Confidence 222211 1112334566677777777754432 45566677777777777753 333344456677777777777654
Q ss_pred ccccccccccCCCcccEEEccCCccCCCchhhhcccccccEEecCCccccCcchhhhccCcCCcEEeccCCcc
Q 036411 338 FSGKMADGLLSSTLLDVLDVSNNKLSGDIPHWIGNFSVLWLLLMSENYLQGSIPVQLGNLESLEFIDISENGL 410 (487)
Q Consensus 338 ~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~ 410 (487)
+......+|.+|.+|+++.+..+ ++.....+|.+|++|+.+++.++... ...+..+.+|+.+.+..+.+
T Consensus 322 v~~I~~~aF~~C~~L~~i~ip~s-v~~I~~~aF~~C~~L~~i~~~~~~~~---~~~~~~~~~L~~i~i~~~~~ 390 (394)
T 4gt6_A 322 ITQILDDAFAGCEQLERIAIPSS-VTKIPESAFSNCTALNNIEYSGSRSQ---WNAISTDSGLQNLPVAPGSI 390 (394)
T ss_dssp CCEECTTTTTTCTTCCEEEECTT-CCBCCGGGGTTCTTCCEEEESSCHHH---HHTCBCCCCC----------
T ss_pred ccEehHhHhhCCCCCCEEEECcc-cCEEhHhHhhCCCCCCEEEECCceee---hhhhhccCCCCEEEeCCCCE
Confidence 44455667777778888887544 44456677888888888888776432 23456677777777765543
|
| >1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7 | Back alignment and structure |
|---|
Probab=99.58 E-value=5.3e-15 Score=124.55 Aligned_cols=127 Identities=18% Similarity=0.256 Sum_probs=73.5
Q ss_pred cEEEcCCCcccccccccccCCCcccEEEccCCccCCCchh-hhcccccccEEecCCccccCcchhhhccCcCCcEEeccC
Q 036411 329 SSLRLNNNHFSGKMADGLLSSTLLDVLDVSNNKLSGDIPH-WIGNFSVLWLLLMSENYLQGSIPVQLGNLESLEFIDISE 407 (487)
Q Consensus 329 ~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~-~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~ 407 (487)
+.++++++.+. ..+..+. ..+++|++++|++.+..+. .++.+++|++|++++|.+++..+..|..+++|+.|++++
T Consensus 11 ~~l~~s~~~l~-~ip~~~~--~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~ 87 (192)
T 1w8a_A 11 TTVDCTGRGLK-EIPRDIP--LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGE 87 (192)
T ss_dssp TEEECTTSCCS-SCCSCCC--TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCS
T ss_pred CEEEcCCCCcC-cCccCCC--CCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCC
Confidence 45666666664 3333332 2566666666666544432 356666666666666666655555666666666666666
Q ss_pred Ccccccccc-ccCCCcceEEEeeCcccCCcchHhhhccCcceEEeCCCCccc
Q 036411 408 NGLSVSMVS-LSNLSSVKHIYLHNNAINGLIPIALLRSSTLLTLDLRDNKFF 458 (487)
Q Consensus 408 ~~~~~~~~~-~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 458 (487)
|+++..... +..+++|++|++++|.+++..+..+..+++|+.|++++|++.
T Consensus 88 N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~ 139 (192)
T 1w8a_A 88 NKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFN 139 (192)
T ss_dssp CCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBC
T ss_pred CcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCcc
Confidence 666433332 445566666666666666555555555566666666666654
|
| >4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165} | Back alignment and structure |
|---|
Probab=99.58 E-value=2.2e-13 Score=128.70 Aligned_cols=333 Identities=12% Similarity=0.117 Sum_probs=199.2
Q ss_pred cccccccCCC-CCcEEECCCCccCCCcchhccCCCCccEEeccCcc---ccCCccccccCCCCCcEEeccccccCcchhH
Q 036411 48 RTKQGICNLK-NLLELDLSSNNFEGHLPQCLNNLTHLKVLDISYNQ---LSGNFPSVLTNLTSLEYLDLSFIDFQGTFLI 123 (487)
Q Consensus 48 ~~~~~~~~~~-~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~---~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~ 123 (487)
+...+|.++. .|+.+.+..+ ++.....+|.+|++|+.+.+..+. ++.....+|..|.+|+.+.+..+
T Consensus 54 Ig~~aF~~~~~~L~sI~iP~s-vt~Ig~~AF~~C~~L~~i~~~~n~p~~l~~Ig~~aF~~c~~L~~i~~~~~-------- 124 (394)
T 4gt6_A 54 IGDRVFCNYKYVLTSVQIPDT-VTEIGSNAFYNCTSLKRVTIQDNKPSCVKKIGRQAFMFCSELTDIPILDS-------- 124 (394)
T ss_dssp ECTTTTTTCCSCCCEEEECTT-CCEECTTTTTTCTTCCEEEEGGGCCCCCCEECTTTTTTCTTCCBCGGGTT--------
T ss_pred cCHhhccCCCCcCEEEEECCC-eeEEhHHHhhCCccCceEeecCCCCCeeeEechhhchhcccceeeccCCc--------
Confidence 3456788774 5888888764 544556778888888888886642 55455567777777777666432
Q ss_pred HHhhccccceEEEeccCCCccccccccccCCCCCceeecccccccccccccccCCcccEEeCCCCcccCCcchHhhhcCC
Q 036411 124 NSLANHSKLEVLVLSSGNDMLQVKTENWLPTYPLKVLQLSHCHLNVNSSFLLHQHHLKFLDLSHNQLVGNFPTWLLQNNT 203 (487)
Q Consensus 124 ~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~ 203 (487)
+..+...++..+..|+.+.+...........+..+..|+.+.+..+- . .+....+ ...
T Consensus 125 -------------------~~~I~~~aF~~c~~L~~i~lp~~~~~I~~~~F~~c~~L~~i~~~~~~-~-~I~~~aF-~~~ 182 (394)
T 4gt6_A 125 -------------------VTEIDSEAFHHCEELDTVTIPEGVTSVADGMFSYCYSLHTVTLPDSV-T-AIEERAF-TGT 182 (394)
T ss_dssp -------------------CSEECTTTTTTCTTCCEEECCTTCCEECTTTTTTCTTCCEEECCTTC-C-EECTTTT-TTC
T ss_pred -------------------cceehhhhhhhhcccccccccceeeeecccceeccccccccccccee-e-Eeccccc-ccc
Confidence 23334444555555555555443333334455556666666664431 1 2333333 234
Q ss_pred CCcEEEcccCCCCCCCCCCCCcCCCCCcEEEccCCcccccCCcccccccCceEEEEccCCCCCCCcchhhhccccCcEEe
Q 036411 204 GLEVLILWNNSFSGILPRLPNAKYDKLRHLDISTNNFSGKLPENLGIVFQKLIYLDVSKNSFEGNIPYSISEMKELITLD 283 (487)
Q Consensus 204 ~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~ 283 (487)
.|+.+.+...... . ....+..+..++.......... .....+........ ...........+..+.
T Consensus 183 ~l~~i~ip~~~~~-i-~~~af~~c~~l~~~~~~~~~~~-~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~ 248 (394)
T 4gt6_A 183 ALTQIHIPAKVTR-I-GTNAFSECFALSTITSDSESYP-AIDNVLYEKSANGD-----------YALIRYPSQREDPAFK 248 (394)
T ss_dssp CCSEEEECTTCCE-E-CTTTTTTCTTCCEEEECCSSSC-BSSSCEEEECTTSC-----------EEEEECCTTCCCSEEE
T ss_pred ceeEEEECCcccc-c-ccchhhhccccceecccccccc-cccceeeccccccc-----------ccccccccccccceEE
Confidence 5666666543211 1 1113455666666665544322 11121111111000 0011112233444555
Q ss_pred cccccCCCCCchhhhcCCCCCcEEECCCCccCCCCCcCCcCCCCccEEEcCCCcccccccccccCCCcccEEEccCCccC
Q 036411 284 LSRNNFSGELPRSIFSSCLSLETLDLSNNNFYGQLFPNFMNLTHLSSLRLNNNHFSGKMADGLLSSTLLDVLDVSNNKLS 363 (487)
Q Consensus 284 l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 363 (487)
+.+ .+. .+....|.+|.+|+.+.+.+... .....+|..+++|+.+.+.. .+......+|.+|.+|+++.+..+ ++
T Consensus 249 ip~-~v~-~i~~~aF~~c~~L~~i~lp~~~~-~I~~~aF~~c~~L~~i~l~~-~i~~I~~~aF~~c~~L~~i~lp~~-v~ 323 (394)
T 4gt6_A 249 IPN-GVA-RIETHAFDSCAYLASVKMPDSVV-SIGTGAFMNCPALQDIEFSS-RITELPESVFAGCISLKSIDIPEG-IT 323 (394)
T ss_dssp CCT-TEE-EECTTTTTTCSSCCEEECCTTCC-EECTTTTTTCTTCCEEECCT-TCCEECTTTTTTCTTCCEEECCTT-CC
T ss_pred cCC-cce-EcccceeeecccccEEecccccc-eecCcccccccccccccCCC-cccccCceeecCCCCcCEEEeCCc-cc
Confidence 543 233 56677899999999999976543 34556788999999999974 344466788999999999999865 55
Q ss_pred CCchhhhcccccccEEecCCccccCcchhhhccCcCCcEEeccCCccccccccccCCCcceEEEeeCccc
Q 036411 364 GDIPHWIGNFSVLWLLLMSENYLQGSIPVQLGNLESLEFIDISENGLSVSMVSLSNLSSVKHIYLHNNAI 433 (487)
Q Consensus 364 ~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 433 (487)
.....+|.+|.+|+.+.+..+ ++......|.+|.+|+.+++.++... ...+..+.+|+.+.+..+.+
T Consensus 324 ~I~~~aF~~C~~L~~i~ip~s-v~~I~~~aF~~C~~L~~i~~~~~~~~--~~~~~~~~~L~~i~i~~~~~ 390 (394)
T 4gt6_A 324 QILDDAFAGCEQLERIAIPSS-VTKIPESAFSNCTALNNIEYSGSRSQ--WNAISTDSGLQNLPVAPGSI 390 (394)
T ss_dssp EECTTTTTTCTTCCEEEECTT-CCBCCGGGGTTCTTCCEEEESSCHHH--HHTCBCCCCC----------
T ss_pred EehHhHhhCCCCCCEEEECcc-cCEEhHhHhhCCCCCCEEEECCceee--hhhhhccCCCCEEEeCCCCE
Confidence 466778999999999999754 55466778999999999999998653 24566788999998876544
|
| >2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A | Back alignment and structure |
|---|
Probab=99.58 E-value=1e-14 Score=120.11 Aligned_cols=130 Identities=23% Similarity=0.197 Sum_probs=68.8
Q ss_pred CccEEEcCCCccc-ccccccccCCCcccEEEccCCccCCCchhhhcccccccEEecCCccccCcchhhhccCcCCcEEec
Q 036411 327 HLSSLRLNNNHFS-GKMADGLLSSTLLDVLDVSNNKLSGDIPHWIGNFSVLWLLLMSENYLQGSIPVQLGNLESLEFIDI 405 (487)
Q Consensus 327 ~L~~L~l~~~~~~-~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l 405 (487)
+|++|++++|.+. +..+..+..+++|+.|++++|.+++. ..+..+++|++|++++|.+.+..+..+..+++|+.|++
T Consensus 25 ~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L 102 (168)
T 2ell_A 25 AVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLNL 102 (168)
T ss_dssp SCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEEEC
T ss_pred cCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEEec
Confidence 3344444444333 22233333444444444444444432 34444555555555555554334444445555666666
Q ss_pred cCCcccccc--ccccCCCcceEEEeeCcccCCcch---HhhhccCcceEEeCCCCccc
Q 036411 406 SENGLSVSM--VSLSNLSSVKHIYLHNNAINGLIP---IALLRSSTLLTLDLRDNKFF 458 (487)
Q Consensus 406 ~~~~~~~~~--~~~~~~~~L~~L~l~~~~~~~~~~---~~~~~~~~L~~L~l~~~~~~ 458 (487)
++|.++... ..+..+++|+.|++++|.+++..+ ..+..+++|+.|++++|.+.
T Consensus 103 s~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~ 160 (168)
T 2ell_A 103 SGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQ 160 (168)
T ss_dssp BSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTSC
T ss_pred cCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCChh
Confidence 665554332 455566667777777777666544 45666777777777777664
|
| >2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A | Back alignment and structure |
|---|
Probab=99.57 E-value=3.6e-15 Score=120.20 Aligned_cols=126 Identities=21% Similarity=0.214 Sum_probs=66.3
Q ss_pred CcccEEEccCCccC-CCchhhhcccccccEEecCCccccCcchhhhccCcCCcEEeccCCcccc-ccccccCCCcceEEE
Q 036411 350 TLLDVLDVSNNKLS-GDIPHWIGNFSVLWLLLMSENYLQGSIPVQLGNLESLEFIDISENGLSV-SMVSLSNLSSVKHIY 427 (487)
Q Consensus 350 ~~L~~L~l~~~~~~-~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~-~~~~~~~~~~L~~L~ 427 (487)
++|+.|++++|.++ +.+|..+..+++|++|++++|.+... ..+..+++|+.|++++|.+.. .+..+..+++|++|+
T Consensus 17 ~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ 94 (149)
T 2je0_A 17 SDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLN 94 (149)
T ss_dssp GGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEE
T ss_pred ccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEE
Confidence 34455555555444 34444444555555555555554432 444455555555555555543 222333455566666
Q ss_pred eeCcccCCc-chHhhhccCcceEEeCCCCcccccCc---ccccccCceeEEecc
Q 036411 428 LHNNAINGL-IPIALLRSSTLLTLDLRDNKFFGRIP---HQINELSNLHFLLLR 477 (487)
Q Consensus 428 l~~~~~~~~-~~~~~~~~~~L~~L~l~~~~~~~~~~---~~l~~l~~L~~L~l~ 477 (487)
+++|.+++. .+..+..+++|+.|++++|++++..+ ..++.+++|+.|+++
T Consensus 95 ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~ 148 (149)
T 2je0_A 95 LSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGY 148 (149)
T ss_dssp CTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTB
T ss_pred CCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCC
Confidence 666655543 12455566666666666666654443 356666666666654
|
| >2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A | Back alignment and structure |
|---|
Probab=99.57 E-value=1.1e-14 Score=117.35 Aligned_cols=128 Identities=22% Similarity=0.190 Sum_probs=67.5
Q ss_pred CCCcEEECCCCccC-CCCCcCCcCCCCccEEEcCCCcccccccccccCCCcccEEEccCCccCCCchhhhcccccccEEe
Q 036411 302 LSLETLDLSNNNFY-GQLFPNFMNLTHLSSLRLNNNHFSGKMADGLLSSTLLDVLDVSNNKLSGDIPHWIGNFSVLWLLL 380 (487)
Q Consensus 302 ~~L~~L~l~~~~~~-~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~ 380 (487)
++|+.|++++|.+. +..+..+..+++|+.|++++|.+.+. ..+..+++|+.|++++|.+++.+|..+..+++|++|+
T Consensus 17 ~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ 94 (149)
T 2je0_A 17 SDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLN 94 (149)
T ss_dssp GGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEE
T ss_pred ccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEE
Confidence 45666666666654 34444455555666666665555433 4444455555555555555443444444444444444
Q ss_pred cCCccccCcchhhhccCcCCcEEeccCCccccccccccCCCcceEEEeeCcccCCcch---HhhhccCcceEEeCC
Q 036411 381 MSENYLQGSIPVQLGNLESLEFIDISENGLSVSMVSLSNLSSVKHIYLHNNAINGLIP---IALLRSSTLLTLDLR 453 (487)
Q Consensus 381 l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~---~~~~~~~~L~~L~l~ 453 (487)
+++|.+++. + .+..+..+++|++|++++|.+++..+ ..+..+++|+.|+++
T Consensus 95 ls~N~i~~~-~---------------------~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~ 148 (149)
T 2je0_A 95 LSGNKIKDL-S---------------------TIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGY 148 (149)
T ss_dssp CTTSCCCSH-H---------------------HHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTB
T ss_pred CCCCcCCCh-H---------------------HHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCC
Confidence 444444421 1 11344455566666666666555444 456666667766665
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* | Back alignment and structure |
|---|
Probab=99.55 E-value=5.4e-17 Score=159.45 Aligned_cols=196 Identities=18% Similarity=0.176 Sum_probs=138.5
Q ss_pred hccccCcEEecccccCCCCCchhhhcCCCCCcEEECCCCccCCCCCcCCcCCCCccEEEcCCCcccccccccccCCCccc
Q 036411 274 SEMKELITLDLSRNNFSGELPRSIFSSCLSLETLDLSNNNFYGQLFPNFMNLTHLSSLRLNNNHFSGKMADGLLSSTLLD 353 (487)
Q Consensus 274 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~ 353 (487)
..++.|+.|++++|.+. .+|..+ +.+++|+.|++++|......+. .+ ..+...+..+..+..+++|+
T Consensus 346 ~~~~~L~~L~Ls~n~L~-~Lp~~i-~~l~~L~~L~l~~n~~l~~l~~------ll-----~~~~~~~~~~~~l~~l~~L~ 412 (567)
T 1dce_A 346 ATDEQLFRCELSVEKST-VLQSEL-ESCKELQELEPENKWCLLTIIL------LM-----RALDPLLYEKETLQYFSTLK 412 (567)
T ss_dssp STTTTSSSCCCCHHHHH-HHHHHH-HHHHHHHHHCTTCHHHHHHHHH------HH-----HHHCTGGGHHHHHHHHHHHH
T ss_pred ccCccceeccCChhhHH-hhHHHH-HHHHHHHHhccccchhhhhHHH------HH-----HhcccccCCHHHHHHHHhcc
Confidence 34566777777777776 666654 5667777777755431000000 00 00112223444555556666
Q ss_pred EEE-ccCCccCCCch-----hhhcc--cccccEEecCCccccCcchhhhccCcCCcEEeccCCccccccccccCCCcceE
Q 036411 354 VLD-VSNNKLSGDIP-----HWIGN--FSVLWLLLMSENYLQGSIPVQLGNLESLEFIDISENGLSVSMVSLSNLSSVKH 425 (487)
Q Consensus 354 ~L~-l~~~~~~~~~~-----~~~~~--~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~L~~ 425 (487)
.|+ ++.+.+..... ..+.. ...|+.|++++|.+++ .|. +..+++|+.|++++|.++..+..+..+++|+.
T Consensus 413 ~L~~l~~n~~~~L~~l~l~~n~i~~l~~~~L~~L~Ls~n~l~~-lp~-~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~ 490 (567)
T 1dce_A 413 AVDPMRAAYLDDLRSKFLLENSVLKMEYADVRVLHLAHKDLTV-LCH-LEQLLLVTHLDLSHNRLRALPPALAALRCLEV 490 (567)
T ss_dssp HHCGGGHHHHHHHHHHHHHHHHHHHHHHTTCSEEECTTSCCSS-CCC-GGGGTTCCEEECCSSCCCCCCGGGGGCTTCCE
T ss_pred cCcchhhcccchhhhhhhhcccccccCccCceEEEecCCCCCC-CcC-ccccccCcEeecCcccccccchhhhcCCCCCE
Confidence 666 44433221000 01111 2368999999999985 565 89999999999999999988888999999999
Q ss_pred EEeeCcccCCcchHhhhccCcceEEeCCCCcccccC-cccccccCceeEEeccCCccCCCCC
Q 036411 426 IYLHNNAINGLIPIALLRSSTLLTLDLRDNKFFGRI-PHQINELSNLHFLLLRGNSLQGRIP 486 (487)
Q Consensus 426 L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~-~~~l~~l~~L~~L~l~~~~~~~~~p 486 (487)
|++++|.+++. | .+..+++|+.|+|++|.+++.. |..+..+++|+.|++++|++.+.+|
T Consensus 491 L~Ls~N~l~~l-p-~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~ 550 (567)
T 1dce_A 491 LQASDNALENV-D-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEG 550 (567)
T ss_dssp EECCSSCCCCC-G-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSS
T ss_pred EECCCCCCCCC-c-ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCcc
Confidence 99999999974 5 7889999999999999998776 9999999999999999999998766
|
| >2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri} | Back alignment and structure |
|---|
Probab=99.54 E-value=2.7e-14 Score=118.71 Aligned_cols=108 Identities=20% Similarity=0.211 Sum_probs=50.2
Q ss_pred CcccEEEccCCccCCCchhhhcccccccEEecCCccccCcchhhhccCcCCcEEeccCCcccccccc-ccCCCcceEEEe
Q 036411 350 TLLDVLDVSNNKLSGDIPHWIGNFSVLWLLLMSENYLQGSIPVQLGNLESLEFIDISENGLSVSMVS-LSNLSSVKHIYL 428 (487)
Q Consensus 350 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~-~~~~~~L~~L~l 428 (487)
++|+.|++++|++.+..+..+..+++|++|++++|.++...+..+..+++|+.|++++|.++..... +..+++|++|++
T Consensus 28 ~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l 107 (177)
T 2o6r_A 28 SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQSLPNGVFDKLTQLKELAL 107 (177)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCCCccccCHHHhhCCcccCEEEC
Confidence 3455555555555444444445555555555555555433333344444555555555544332222 234444444444
Q ss_pred eCcccCCcchHhhhccCcceEEeCCCCcc
Q 036411 429 HNNAINGLIPIALLRSSTLLTLDLRDNKF 457 (487)
Q Consensus 429 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 457 (487)
++|.+++..+..+..+++|+.|++++|++
T Consensus 108 ~~N~l~~~~~~~~~~l~~L~~L~l~~N~~ 136 (177)
T 2o6r_A 108 DTNQLKSVPDGIFDRLTSLQKIWLHTNPW 136 (177)
T ss_dssp CSSCCSCCCTTTTTTCTTCCEEECCSSCB
T ss_pred cCCcceEeCHHHhcCCcccCEEEecCCCe
Confidence 44444444333344444444444444444
|
| >2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.52 E-value=5.5e-14 Score=118.20 Aligned_cols=126 Identities=21% Similarity=0.279 Sum_probs=73.5
Q ss_pred cEEEcCCCcccccccccccCCCcccEEEccCCccCCCchhhhcccccccEEecCCccccCcchhhhccCcCCcEEeccCC
Q 036411 329 SSLRLNNNHFSGKMADGLLSSTLLDVLDVSNNKLSGDIPHWIGNFSVLWLLLMSENYLQGSIPVQLGNLESLEFIDISEN 408 (487)
Q Consensus 329 ~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~ 408 (487)
+.++++++.+. ..+..+ .+.|++|++++|.++ .+|..+..+++|++|++++|.++...+..|..+++|+.|++++|
T Consensus 13 ~~l~~~~~~l~-~ip~~~--~~~l~~L~L~~n~i~-~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N 88 (193)
T 2wfh_A 13 TVVRCSNKGLK-VLPKGI--PRDVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYN 88 (193)
T ss_dssp TEEECTTSCCS-SCCSCC--CTTCCEEECCSSCCC-SCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CEEEcCCCCCC-cCCCCC--CCCCCEEECCCCcCc-hhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCC
Confidence 45566666655 333322 245666666666665 44556666666666666666666555555666666666666666
Q ss_pred ccccccc-cccCCCcceEEEeeCcccCCcchHhhhccCcceEEeCCCCccc
Q 036411 409 GLSVSMV-SLSNLSSVKHIYLHNNAINGLIPIALLRSSTLLTLDLRDNKFF 458 (487)
Q Consensus 409 ~~~~~~~-~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 458 (487)
.++.... .+..+++|+.|++++|.++...+..+..+++|+.|++++|++.
T Consensus 89 ~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~ 139 (193)
T 2wfh_A 89 RLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPLY 139 (193)
T ss_dssp CCCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCEE
T ss_pred ccCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCCee
Confidence 6643332 3445666666666666666555555555666666666666653
|
| >4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C} | Back alignment and structure |
|---|
Probab=99.51 E-value=5.4e-15 Score=149.93 Aligned_cols=216 Identities=22% Similarity=0.333 Sum_probs=91.9
Q ss_pred CceEEEEccCCCCCCCcchhhhccccCcEE-----ecccccCCCCCchhhhcCCCCCcEEECCCCccCCCCCcCCcCCCC
Q 036411 253 QKLIYLDVSKNSFEGNIPYSISEMKELITL-----DLSRNNFSGELPRSIFSSCLSLETLDLSNNNFYGQLFPNFMNLTH 327 (487)
Q Consensus 253 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L-----~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~ 327 (487)
+.++.|++.++.+... +..+.....|+.+ ++..+.+. ++...|..+++|+.|++++|.+. .++..+..+++
T Consensus 173 ~~~~~l~L~~n~~~~~-~~~~l~~l~Ls~~~i~~~~~~~n~~~--~~~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~~l~~ 248 (727)
T 4b8c_D 173 PLTPKIELFANGKDEA-NQALLQHKKLSQYSIDEDDDIENRMV--MPKDSKYDDQLWHALDLSNLQIF-NISANIFKYDF 248 (727)
T ss_dssp ----------------------------------------------------CCCCCCEEECTTSCCS-CCCGGGGGCCS
T ss_pred CccceEEeeCCCCCcc-hhhHhhcCccCcccccCcccccccee--cChhhhccCCCCcEEECCCCCCC-CCChhhcCCCC
Confidence 4577788877776532 2222122222222 22222222 34445667777888888877776 34445557777
Q ss_pred ccEEEcCCCcccccccccccCCCcccEEEccCCccCCCchhhhcccccccEEecCCccccCcchhhhccCcCCcEEeccC
Q 036411 328 LSSLRLNNNHFSGKMADGLLSSTLLDVLDVSNNKLSGDIPHWIGNFSVLWLLLMSENYLQGSIPVQLGNLESLEFIDISE 407 (487)
Q Consensus 328 L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~ 407 (487)
|+.|++++|.++ ..+..+..+++|+.|++++|.++ .+|..++.+++|++|++++|.+. .+|..|..+++|+.|+|++
T Consensus 249 L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~-~lp~~~~~l~~L~~L~L~~ 325 (727)
T 4b8c_D 249 LTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLT-SLPAELGSCFQLKYFYFFDNMVT-TLPWEFGNLCNLQFLGVEG 325 (727)
T ss_dssp CSCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSCCS-SCCSSGGGGTTCSEEECCSSCCC-CCCSSTTSCTTCCCEECTT
T ss_pred CCEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCcCC-ccChhhcCCCCCCEEECCCCCCC-ccChhhhcCCCccEEeCCC
Confidence 777777777776 55666777777777777777776 55777777777777777777776 5566677777777777777
Q ss_pred Ccccccccc-ccCC-CcceEEEeeCcccCCcchHhhhccCcceEEeCCCC--------cccccCcccccccCceeEEecc
Q 036411 408 NGLSVSMVS-LSNL-SSVKHIYLHNNAINGLIPIALLRSSTLLTLDLRDN--------KFFGRIPHQINELSNLHFLLLR 477 (487)
Q Consensus 408 ~~~~~~~~~-~~~~-~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~--------~~~~~~~~~l~~l~~L~~L~l~ 477 (487)
|.+...... +... ..+..+++++|.++...| ..|+.|+++.| .+....+..+.++..++...++
T Consensus 326 N~l~~~~p~~~~~~~~~~~~l~l~~N~l~~~~p------~~l~~l~l~~n~~~~~~~~~l~~~~~~~~~~l~~~~~~~ls 399 (727)
T 4b8c_D 326 NPLEKQFLKILTEKSVTGLIFYLRDNRPEIPLP------HERRFIEINTDGEPQREYDSLQQSTEHLATDLAKRTFTVLS 399 (727)
T ss_dssp SCCCSHHHHHHHHHHHHHHHHHHHHCCCCCCCC------CC---------------------------------------
T ss_pred CccCCCChHHHhhcchhhhHHhhccCcccCcCc------cccceeEeecccccccccCCccccccchhhcccccceeeee
Confidence 777533222 2211 112235666777665544 34566666666 2223333344455555666666
Q ss_pred CCcc
Q 036411 478 GNSL 481 (487)
Q Consensus 478 ~~~~ 481 (487)
+|-+
T Consensus 400 ~Nil 403 (727)
T 4b8c_D 400 YNTL 403 (727)
T ss_dssp --CC
T ss_pred cccc
Confidence 6654
|
| >1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7 | Back alignment and structure |
|---|
Probab=99.51 E-value=2.4e-14 Score=120.52 Aligned_cols=108 Identities=20% Similarity=0.259 Sum_probs=43.3
Q ss_pred CCcEEECCCCccCCCCCc-CCcCCCCccEEEcCCCcccccccccccCCCcccEEEccCCccCCCchhhhcccccccEEec
Q 036411 303 SLETLDLSNNNFYGQLFP-NFMNLTHLSSLRLNNNHFSGKMADGLLSSTLLDVLDVSNNKLSGDIPHWIGNFSVLWLLLM 381 (487)
Q Consensus 303 ~L~~L~l~~~~~~~~~~~-~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l 381 (487)
++++|++++|.+.+..+. .+..+++|+.|++++|.+++..+..+..+++|++|++++|++++..+..+..+++|++|++
T Consensus 30 ~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L 109 (192)
T 1w8a_A 30 HTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNL 109 (192)
T ss_dssp TCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCCCEECSSSSTTCTTCCEEEC
T ss_pred CCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCCcCCccCHHHhcCCCCCCEEEC
Confidence 444444444444332221 1333444444444444443333333334444444444444443333333344444444444
Q ss_pred CCccccCcchhhhccCcCCcEEeccCCcc
Q 036411 382 SENYLQGSIPVQLGNLESLEFIDISENGL 410 (487)
Q Consensus 382 ~~~~~~~~~~~~~~~~~~L~~l~l~~~~~ 410 (487)
++|.+++..+..+..+++|+.|++++|++
T Consensus 110 ~~N~l~~~~~~~~~~l~~L~~L~L~~N~l 138 (192)
T 1w8a_A 110 YDNQISCVMPGSFEHLNSLTSLNLASNPF 138 (192)
T ss_dssp CSSCCCEECTTSSTTCTTCCEEECTTCCB
T ss_pred CCCcCCeeCHHHhhcCCCCCEEEeCCCCc
Confidence 44444433333344444444444444433
|
| >1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 | Back alignment and structure |
|---|
Probab=99.50 E-value=4.1e-14 Score=117.38 Aligned_cols=128 Identities=17% Similarity=0.128 Sum_probs=60.1
Q ss_pred CCcccEEEccCCccCCCchhhhcccccccEEecCCccccCcchhhhccCcCCcEEeccCCccccccccc-cCCCcceEEE
Q 036411 349 STLLDVLDVSNNKLSGDIPHWIGNFSVLWLLLMSENYLQGSIPVQLGNLESLEFIDISENGLSVSMVSL-SNLSSVKHIY 427 (487)
Q Consensus 349 ~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~-~~~~~L~~L~ 427 (487)
+.+|+.|++++|++.. ++......++|++|++++|.+.+. ..+..+++|+.|++++|.++..+..+ ..+++|++|+
T Consensus 18 ~~~L~~L~l~~n~l~~-i~~~~~~~~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ 94 (176)
T 1a9n_A 18 AVRDRELDLRGYKIPV-IENLGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELI 94 (176)
T ss_dssp TTSCEEEECTTSCCCS-CCCGGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCEEE
T ss_pred cCCceEEEeeCCCCch-hHHhhhcCCCCCEEECCCCCCCcc--cccccCCCCCEEECCCCcccccCcchhhcCCCCCEEE
Confidence 3444444444444442 222222222455555555544422 34444555555555555554333222 4455555555
Q ss_pred eeCcccCCcch-HhhhccCcceEEeCCCCcccccCcc----cccccCceeEEeccCCc
Q 036411 428 LHNNAINGLIP-IALLRSSTLLTLDLRDNKFFGRIPH----QINELSNLHFLLLRGNS 480 (487)
Q Consensus 428 l~~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~~~~----~l~~l~~L~~L~l~~~~ 480 (487)
+++|.++...+ ..+..+++|+.|++++|+++ .++. .+..+|+|+.|++++|+
T Consensus 95 L~~N~i~~~~~~~~l~~l~~L~~L~l~~N~i~-~~~~~~~~~~~~l~~L~~Ld~~~n~ 151 (176)
T 1a9n_A 95 LTNNSLVELGDLDPLASLKSLTYLCILRNPVT-NKKHYRLYVIYKVPQVRVLDFQKVK 151 (176)
T ss_dssp CCSCCCCCGGGGGGGGGCTTCCEEECCSSGGG-GSTTHHHHHHHHCTTCSEETTEECC
T ss_pred CCCCcCCcchhhHhhhcCCCCCEEEecCCCCC-CcHhHHHHHHHHCCccceeCCCcCC
Confidence 55555543322 14455555555555555554 2233 25555555555555554
|
| >1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A | Back alignment and structure |
|---|
Probab=99.49 E-value=5.2e-16 Score=131.60 Aligned_cols=133 Identities=22% Similarity=0.241 Sum_probs=85.6
Q ss_pred cccCCCcccEEEccCCccCCCchhhhcccccccEEecCCccccCcchhhhccCcCCcEEeccCCccccccccccCCCcce
Q 036411 345 GLLSSTLLDVLDVSNNKLSGDIPHWIGNFSVLWLLLMSENYLQGSIPVQLGNLESLEFIDISENGLSVSMVSLSNLSSVK 424 (487)
Q Consensus 345 ~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~L~ 424 (487)
.+..+++|++|++++|.+.+ +| .+..+++|++|++++|.+. ..|..+..+++|+.|++++|++...+ .+..+++|+
T Consensus 43 ~~~~l~~L~~L~ls~n~l~~-l~-~~~~l~~L~~L~l~~n~l~-~l~~~~~~~~~L~~L~L~~N~l~~l~-~~~~l~~L~ 118 (198)
T 1ds9_A 43 TLSTLKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIK-KIENLDAVADTLEELWISYNQIASLS-GIEKLVNLR 118 (198)
T ss_dssp HHHHTTTCSEEECSEEEESC-CC-CHHHHTTCCEEEEEEEEEC-SCSSHHHHHHHCSEEEEEEEECCCHH-HHHHHHHSS
T ss_pred HHhcCCCCCEEECCCCCCcc-cc-ccccCCCCCEEECCCCCcc-cccchhhcCCcCCEEECcCCcCCcCC-ccccCCCCC
Confidence 45556666666666666654 34 5666666777777766666 44555555667777777777665433 455667777
Q ss_pred EEEeeCcccCCcch-HhhhccCcceEEeCCCCcccccCcc----------cccccCceeEEeccCCccCC
Q 036411 425 HIYLHNNAINGLIP-IALLRSSTLLTLDLRDNKFFGRIPH----------QINELSNLHFLLLRGNSLQG 483 (487)
Q Consensus 425 ~L~l~~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~~~~----------~l~~l~~L~~L~l~~~~~~~ 483 (487)
+|++++|.+++..+ ..+..+++|+.|++++|++.+..|. .+..+++|+.|+ ++++..
T Consensus 119 ~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~l~~L~~Ld--~~~i~~ 186 (198)
T 1ds9_A 119 VLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD--GMPVDV 186 (198)
T ss_dssp EEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHHHHHCSSCSEEC--CGGGTT
T ss_pred EEECCCCcCCchhHHHHHhcCCCCCEEEecCCccccccccccchHHHHHHHHHhCCCcEEEC--CcccCH
Confidence 77777777775433 4566777777777777777554433 367778888776 666653
|
| >1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 | Back alignment and structure |
|---|
Probab=99.46 E-value=1.2e-13 Score=114.56 Aligned_cols=109 Identities=20% Similarity=0.234 Sum_probs=58.6
Q ss_pred hcCCCCCcEEECCCCccCCCCCcCCcCC-CCccEEEcCCCcccccccccccCCCcccEEEccCCccCCCchhhhcccccc
Q 036411 298 FSSCLSLETLDLSNNNFYGQLFPNFMNL-THLSSLRLNNNHFSGKMADGLLSSTLLDVLDVSNNKLSGDIPHWIGNFSVL 376 (487)
Q Consensus 298 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~-~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L 376 (487)
|..+.+|+.|++++|.+... +.+..+ ++|+.|++++|.+.+. ..+..+++|+.|++++|++++..+..+..+++|
T Consensus 15 ~~~~~~L~~L~l~~n~l~~i--~~~~~~~~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L 90 (176)
T 1a9n_A 15 YTNAVRDRELDLRGYKIPVI--ENLGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDL 90 (176)
T ss_dssp EECTTSCEEEECTTSCCCSC--CCGGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTC
T ss_pred cCCcCCceEEEeeCCCCchh--HHhhhcCCCCCEEECCCCCCCcc--cccccCCCCCEEECCCCcccccCcchhhcCCCC
Confidence 34566777777777766532 223333 3666666666666532 455555666666666666553333334555555
Q ss_pred cEEecCCccccCcchh--hhccCcCCcEEeccCCccc
Q 036411 377 WLLLMSENYLQGSIPV--QLGNLESLEFIDISENGLS 411 (487)
Q Consensus 377 ~~L~l~~~~~~~~~~~--~~~~~~~L~~l~l~~~~~~ 411 (487)
++|++++|.+. ..+. .+..+++|+.|++++|++.
T Consensus 91 ~~L~L~~N~i~-~~~~~~~l~~l~~L~~L~l~~N~i~ 126 (176)
T 1a9n_A 91 TELILTNNSLV-ELGDLDPLASLKSLTYLCILRNPVT 126 (176)
T ss_dssp CEEECCSCCCC-CGGGGGGGGGCTTCCEEECCSSGGG
T ss_pred CEEECCCCcCC-cchhhHhhhcCCCCCEEEecCCCCC
Confidence 55555555554 2332 3444455555555555443
|
| >4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C} | Back alignment and structure |
|---|
Probab=99.46 E-value=1.8e-14 Score=146.18 Aligned_cols=192 Identities=21% Similarity=0.255 Sum_probs=117.3
Q ss_pred cccCcEEecccccCCCCCchhhhcCCCCCcEEE-----CCCCccCCCCCcCCcCCCCccEEEcCCCcccccccccccCCC
Q 036411 276 MKELITLDLSRNNFSGELPRSIFSSCLSLETLD-----LSNNNFYGQLFPNFMNLTHLSSLRLNNNHFSGKMADGLLSST 350 (487)
Q Consensus 276 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~-----l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~ 350 (487)
.+.++.|++.++.+. ..+...+. ...|..+. +..+.+. ..+..+..++.|+.|++++|.+. ..+..+..++
T Consensus 172 ~~~~~~l~L~~n~~~-~~~~~~l~-~l~Ls~~~i~~~~~~~n~~~-~~~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~~l~ 247 (727)
T 4b8c_D 172 TPLTPKIELFANGKD-EANQALLQ-HKKLSQYSIDEDDDIENRMV-MPKDSKYDDQLWHALDLSNLQIF-NISANIFKYD 247 (727)
T ss_dssp -----------------------------------------------------CCCCCCEEECTTSCCS-CCCGGGGGCC
T ss_pred CCccceEEeeCCCCC-cchhhHhh-cCccCcccccCcccccccee-cChhhhccCCCCcEEECCCCCCC-CCChhhcCCC
Confidence 356788888888776 44443322 12233222 2223332 34566788899999999999987 5555666889
Q ss_pred cccEEEccCCccCCCchhhhcccccccEEecCCccccCcchhhhccCcCCcEEeccCCccccccccccCCCcceEEEeeC
Q 036411 351 LLDVLDVSNNKLSGDIPHWIGNFSVLWLLLMSENYLQGSIPVQLGNLESLEFIDISENGLSVSMVSLSNLSSVKHIYLHN 430 (487)
Q Consensus 351 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~ 430 (487)
+|++|++++|.++ .+|..+..+++|++|++++|.++ .+|..+..+++|+.|+|++|.+...+..+..+++|+.|++++
T Consensus 248 ~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~lp~~~~~l~~L~~L~L~~ 325 (727)
T 4b8c_D 248 FLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLT-SLPAELGSCFQLKYFYFFDNMVTTLPWEFGNLCNLQFLGVEG 325 (727)
T ss_dssp SCSCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSCCS-SCCSSGGGGTTCSEEECCSSCCCCCCSSTTSCTTCCCEECTT
T ss_pred CCCEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCcCC-ccChhhcCCCCCCEEECCCCCCCccChhhhcCCCccEEeCCC
Confidence 9999999999998 78888999999999999999998 678889999999999999999987788888999999999999
Q ss_pred cccCCcchHhhhccC-cceEEeCCCCcccccCcccccccCceeEEeccCC
Q 036411 431 NAINGLIPIALLRSS-TLLTLDLRDNKFFGRIPHQINELSNLHFLLLRGN 479 (487)
Q Consensus 431 ~~~~~~~~~~~~~~~-~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~ 479 (487)
|.+++.++..+.... .+..+++++|.+++.+|. .|+.|++++|
T Consensus 326 N~l~~~~p~~~~~~~~~~~~l~l~~N~l~~~~p~------~l~~l~l~~n 369 (727)
T 4b8c_D 326 NPLEKQFLKILTEKSVTGLIFYLRDNRPEIPLPH------ERRFIEINTD 369 (727)
T ss_dssp SCCCSHHHHHHHHHHHHHHHHHHHHCCCCCCCCC------C---------
T ss_pred CccCCCChHHHhhcchhhhHHhhccCcccCcCcc------ccceeEeecc
Confidence 999988887775442 223478899988776665 4556666666
|
| >2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.44 E-value=8.2e-13 Score=111.02 Aligned_cols=107 Identities=25% Similarity=0.270 Sum_probs=47.4
Q ss_pred CCcEEECCCCccCCCCCcCCcCCCCccEEEcCCCcccccccccccCCCcccEEEccCCccCCCchhhhcccccccEEecC
Q 036411 303 SLETLDLSNNNFYGQLFPNFMNLTHLSSLRLNNNHFSGKMADGLLSSTLLDVLDVSNNKLSGDIPHWIGNFSVLWLLLMS 382 (487)
Q Consensus 303 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~ 382 (487)
+|++|++++|.+. .++..+..+++|+.|++++|.+++..+..|..+++|++|++++|++++..+..|..+++|++|+++
T Consensus 32 ~l~~L~L~~n~i~-~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L~ 110 (193)
T 2wfh_A 32 DVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLRLLSLH 110 (193)
T ss_dssp TCCEEECCSSCCC-SCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECC
T ss_pred CCCEEECCCCcCc-hhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCccCEeCHHHhCCCCCCCEEECC
Confidence 4444444444443 222334444444444444444443333344444444444444444444444444444444444444
Q ss_pred CccccCcchhhhccCcCCcEEeccCCcc
Q 036411 383 ENYLQGSIPVQLGNLESLEFIDISENGL 410 (487)
Q Consensus 383 ~~~~~~~~~~~~~~~~~L~~l~l~~~~~ 410 (487)
+|.++...+..|..+++|+.|++++|++
T Consensus 111 ~N~l~~~~~~~~~~l~~L~~L~L~~N~~ 138 (193)
T 2wfh_A 111 GNDISVVPEGAFNDLSALSHLAIGANPL 138 (193)
T ss_dssp SSCCCBCCTTTTTTCTTCCEEECCSSCE
T ss_pred CCCCCeeChhhhhcCccccEEEeCCCCe
Confidence 4444433333344444555555554443
|
| >2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri} | Back alignment and structure |
|---|
Probab=99.44 E-value=1.4e-12 Score=108.30 Aligned_cols=85 Identities=25% Similarity=0.232 Sum_probs=33.3
Q ss_pred CCcEEECCCCccCCCCCcCCcCCCCccEEEcCCCcccccccccccCCCcccEEEccCCccCCCchhhhcccccccEEecC
Q 036411 303 SLETLDLSNNNFYGQLFPNFMNLTHLSSLRLNNNHFSGKMADGLLSSTLLDVLDVSNNKLSGDIPHWIGNFSVLWLLLMS 382 (487)
Q Consensus 303 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~ 382 (487)
+|+.|++++|.+.+..+..+..+++|++|++++|.+.+.....+..+++|+.|++++|++++..+..+..+++|++|+++
T Consensus 29 ~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~ 108 (177)
T 2o6r_A 29 SATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQSLPNGVFDKLTQLKELALD 108 (177)
T ss_dssp TCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred CCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCCCccccCHHHhhCCcccCEEECc
Confidence 44444444444433333333334444444444444332222233334444444444444433333333334444444444
Q ss_pred Ccccc
Q 036411 383 ENYLQ 387 (487)
Q Consensus 383 ~~~~~ 387 (487)
+|.+.
T Consensus 109 ~N~l~ 113 (177)
T 2o6r_A 109 TNQLK 113 (177)
T ss_dssp SSCCS
T ss_pred CCcce
Confidence 44333
|
| >4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum} | Back alignment and structure |
|---|
Probab=99.42 E-value=1.6e-11 Score=115.41 Aligned_cols=108 Identities=13% Similarity=0.157 Sum_probs=52.9
Q ss_pred hhhhccccCcEEecccccCCCCCchhhhcCCCCCcEEECCCCccCCCCCcCCcCCCCccEEEcCCCcccccccccccCCC
Q 036411 271 YSISEMKELITLDLSRNNFSGELPRSIFSSCLSLETLDLSNNNFYGQLFPNFMNLTHLSSLRLNNNHFSGKMADGLLSST 350 (487)
Q Consensus 271 ~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~ 350 (487)
.++..+..|+.+.+..+ +. .++...|.++.+|+.+.+..+ +......+|..+++|+.+.+.++.+......+|.+|.
T Consensus 234 ~~f~~~~~L~~i~lp~~-v~-~I~~~aF~~~~~l~~i~l~~~-i~~i~~~aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~ 310 (379)
T 4h09_A 234 GAFYGMKALDEIAIPKN-VT-SIGSFLLQNCTALKTLNFYAK-VKTVPYLLCSGCSNLTKVVMDNSAIETLEPRVFMDCV 310 (379)
T ss_dssp TTTTTCSSCCEEEECTT-CC-EECTTTTTTCTTCCEEEECCC-CSEECTTTTTTCTTCCEEEECCTTCCEECTTTTTTCT
T ss_pred ccccCCccceEEEcCCC-cc-EeCccccceeehhcccccccc-ceeccccccccccccccccccccccceehhhhhcCCC
Confidence 34445555555555443 32 444555555555555555432 2222333445555555555555444444445555555
Q ss_pred cccEEEccCCccCCCchhhhcccccccEEecC
Q 036411 351 LLDVLDVSNNKLSGDIPHWIGNFSVLWLLLMS 382 (487)
Q Consensus 351 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~ 382 (487)
+|+++.+..+ ++.....+|.+|++|+.+.+.
T Consensus 311 ~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~ip 341 (379)
T 4h09_A 311 KLSSVTLPTA-LKTIQVYAFKNCKALSTISYP 341 (379)
T ss_dssp TCCEEECCTT-CCEECTTTTTTCTTCCCCCCC
T ss_pred CCCEEEcCcc-ccEEHHHHhhCCCCCCEEEEC
Confidence 5555555432 222334445555555555553
|
| >3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.37 E-value=1.6e-13 Score=127.60 Aligned_cols=181 Identities=15% Similarity=0.108 Sum_probs=127.9
Q ss_pred CCCCcEEECCCCccCCCCCcCCc-----CCCCccEEEcCCCcccccccccc-cCCCcccEEEccCCccCCCchhhh----
Q 036411 301 CLSLETLDLSNNNFYGQLFPNFM-----NLTHLSSLRLNNNHFSGKMADGL-LSSTLLDVLDVSNNKLSGDIPHWI---- 370 (487)
Q Consensus 301 ~~~L~~L~l~~~~~~~~~~~~~~-----~~~~L~~L~l~~~~~~~~~~~~~-~~~~~L~~L~l~~~~~~~~~~~~~---- 370 (487)
.++|+.|++++|.+.......+. ..++|++|++++|.++......+ ..+.+|++|++++|.++......+
T Consensus 71 ~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L 150 (372)
T 3un9_A 71 LSSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLL 150 (372)
T ss_dssp HTTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHH
T ss_pred HhhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHH
Confidence 46899999999988643333322 23789999999999875444333 345689999999999875544444
Q ss_pred -cccccccEEecCCccccCc----chhhhccCcCCcEEeccCCcccc-----ccccccCCCcceEEEeeCcccCCcc---
Q 036411 371 -GNFSVLWLLLMSENYLQGS----IPVQLGNLESLEFIDISENGLSV-----SMVSLSNLSSVKHIYLHNNAINGLI--- 437 (487)
Q Consensus 371 -~~~~~L~~L~l~~~~~~~~----~~~~~~~~~~L~~l~l~~~~~~~-----~~~~~~~~~~L~~L~l~~~~~~~~~--- 437 (487)
...++|++|++++|.++.. ....+..+++|+.|++++|.+.. ....+...++|++|++++|.++...
T Consensus 151 ~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~ 230 (372)
T 3un9_A 151 LHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALA 230 (372)
T ss_dssp HSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHH
T ss_pred HhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHH
Confidence 3468899999999988643 23344678999999999999852 2445567789999999999998643
Q ss_pred -hHhhhccCcceEEeCCCCcccccCcccccccC--c---eeEEe--ccCCcc
Q 036411 438 -PIALLRSSTLLTLDLRDNKFFGRIPHQINELS--N---LHFLL--LRGNSL 481 (487)
Q Consensus 438 -~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~--~---L~~L~--l~~~~~ 481 (487)
..++..+++|+.|+|++|.+++.....+..+. . |+.+. +.++.+
T Consensus 231 l~~~L~~~~~L~~L~Ls~N~i~~~g~~~L~~~~~~~~~~L~~l~~ll~~~~~ 282 (372)
T 3un9_A 231 LARAAREHPSLELLHLYFNELSSEGRQVLRDLGGAAEGGARVVVSLTEGTAV 282 (372)
T ss_dssp HHHHHHHCSSCCEEECTTSSCCHHHHHHHHHCC------CEEECCCC----C
T ss_pred HHHHHHhCCCCCEEeccCCCCCHHHHHHHHHHhcCCCccchhhHhhhcCCcc
Confidence 34455679999999999999766555554432 2 67776 666654
|
| >4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum} | Back alignment and structure |
|---|
Probab=99.37 E-value=5.8e-11 Score=111.54 Aligned_cols=304 Identities=11% Similarity=0.076 Sum_probs=176.9
Q ss_pred cccCCCCCcEEEccCccccCCcccccccCCCCCcEEECCCCccCCCcchhccCCCCccEEeccCccccCCccccccCCCC
Q 036411 27 YLNTLTSLTTLNLRYNKIEGSRTKQGICNLKNLLELDLSSNNFEGHLPQCLNNLTHLKVLDISYNQLSGNFPSVLTNLTS 106 (487)
Q Consensus 27 ~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~ 106 (487)
|+....+|+.+.+... ++ .+...+|.+|.+|+++++..+ +......+|.++ +|+.+.+..+ ++......|..+ +
T Consensus 41 ~~~~~~~i~~v~ip~~-vt-~Ig~~aF~~C~~L~~I~lp~~-v~~Ig~~aF~~c-~l~~i~~~~~-l~~I~~~aF~~~-~ 114 (379)
T 4h09_A 41 WYKDRDRISEVRVNSG-IT-SIGEANFNSCYNMTKVTVAST-VTSIGDGAFADT-KLQSYTGMER-VKKFGDYVFQGT-D 114 (379)
T ss_dssp TGGGGGGCSEEEECTT-EE-EECTTTTTTCTTCCEEEECTT-CCEECTTTTTTC-CCCEEEECTT-CCEECTTTTTTC-C
T ss_pred ccccccCCEEEEeCCC-cc-ChHHHHhhCCCCCCEEEeCCc-ceEechhhhcCC-CCceEECCce-eeEeccceeccC-C
Confidence 4555566777777654 22 244556777777777777654 433444556666 4666655432 332333445443 6
Q ss_pred CcEEeccccccCcchhHHHhhccccceEEEeccCCCccccccccccCCCCCceeecccccc-------------cccccc
Q 036411 107 LEYLDLSFIDFQGTFLINSLANHSKLEVLVLSSGNDMLQVKTENWLPTYPLKVLQLSHCHL-------------NVNSSF 173 (487)
Q Consensus 107 L~~L~l~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~-------------~~~~~~ 173 (487)
|+.+.+..+-. ......+..+ +++.+.+ ...+..+....+..+..++.+.+..... ......
T Consensus 115 L~~i~lp~~~~--~i~~~~F~~~-~l~~~~~--~~~v~~i~~~~f~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 189 (379)
T 4h09_A 115 LDDFEFPGATT--EIGNYIFYNS-SVKRIVI--PKSVTTIKDGIGYKAENLEKIEVSSNNKNYVAENYVLYNKNKTILES 189 (379)
T ss_dssp CSEEECCTTCC--EECTTTTTTC-CCCEEEE--CTTCCEECSCTTTTCTTCCEEEECTTCSSEEEETTEEEETTSSEEEE
T ss_pred cccccCCCccc--cccccccccc-eeeeeec--cceeeccccchhcccccccccccccccceeecccceecccccceecc
Confidence 77777654311 1112233333 3444443 2344555555666666666665543321 111122
Q ss_pred cccCCcccEEeCCCCcccCCcchHhhhcCCCCcEEEcccCCCCCCCCCCCCcCCCCCcEEEccCCcccccCCcccccccC
Q 036411 174 LLHQHHLKFLDLSHNQLVGNFPTWLLQNNTGLEVLILWNNSFSGILPRLPNAKYDKLRHLDISTNNFSGKLPENLGIVFQ 253 (487)
Q Consensus 174 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~ 253 (487)
+..+..+..+.+..... ......+..+..++.+.+...- . ......+..+..|+.+.+..+ +. .+....+..+.
T Consensus 190 ~~~~~~~~~~~~~~~~~--~i~~~~f~~~~~l~~i~~~~~~-~-~i~~~~f~~~~~L~~i~lp~~-v~-~I~~~aF~~~~ 263 (379)
T 4h09_A 190 YPAAKTGTEFTIPSTVK--TVTAYGFSYGKNLKKITITSGV-T-TLGDGAFYGMKALDEIAIPKN-VT-SIGSFLLQNCT 263 (379)
T ss_dssp CCTTCCCSEEECCTTCC--EECTTTTTTCSSCSEEECCTTC-C-EECTTTTTTCSSCCEEEECTT-CC-EECTTTTTTCT
T ss_pred cccccccccccccccee--EEeecccccccccceeeeccce-e-EEccccccCCccceEEEcCCC-cc-EeCccccceee
Confidence 33344555555543321 2333344567778887775442 1 122224466778888888654 32 34444455567
Q ss_pred ceEEEEccCCCCCCCcchhhhccccCcEEecccccCCCCCchhhhcCCCCCcEEECCCCccCCCCCcCCcCCCCccEEEc
Q 036411 254 KLIYLDVSKNSFEGNIPYSISEMKELITLDLSRNNFSGELPRSIFSSCLSLETLDLSNNNFYGQLFPNFMNLTHLSSLRL 333 (487)
Q Consensus 254 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l 333 (487)
.|+.+.+... +......++.++++|+.+.+.++.+. .++...|.+|.+|+.+.+..+ +......+|..+.+|+.+.+
T Consensus 264 ~l~~i~l~~~-i~~i~~~aF~~c~~L~~i~l~~~~i~-~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~i 340 (379)
T 4h09_A 264 ALKTLNFYAK-VKTVPYLLCSGCSNLTKVVMDNSAIE-TLEPRVFMDCVKLSSVTLPTA-LKTIQVYAFKNCKALSTISY 340 (379)
T ss_dssp TCCEEEECCC-CSEECTTTTTTCTTCCEEEECCTTCC-EECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCCCCC
T ss_pred hhcccccccc-ceeccccccccccccccccccccccc-eehhhhhcCCCCCCEEEcCcc-ccEEHHHHhhCCCCCCEEEE
Confidence 8888888654 43355567888999999999888787 788888999999999999754 44455667888999999988
Q ss_pred CCCcccccccccccCCCc
Q 036411 334 NNNHFSGKMADGLLSSTL 351 (487)
Q Consensus 334 ~~~~~~~~~~~~~~~~~~ 351 (487)
..+ +......+|.++..
T Consensus 341 p~~-v~~I~~~aF~~c~~ 357 (379)
T 4h09_A 341 PKS-ITLIESGAFEGSSI 357 (379)
T ss_dssp CTT-CCEECTTTTTTSSC
T ss_pred CCc-cCEEchhHhhCCCC
Confidence 655 44455666766643
|
| >1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A | Back alignment and structure |
|---|
Probab=99.35 E-value=8.1e-15 Score=124.23 Aligned_cols=118 Identities=19% Similarity=0.262 Sum_probs=100.4
Q ss_pred CchhhhcccccccEEecCCccccCcchhhhccCcCCcEEeccCCccccccccccCCCcceEEEeeCcccCCcchHhhhcc
Q 036411 365 DIPHWIGNFSVLWLLLMSENYLQGSIPVQLGNLESLEFIDISENGLSVSMVSLSNLSSVKHIYLHNNAINGLIPIALLRS 444 (487)
Q Consensus 365 ~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~ 444 (487)
.+|..+..+++|++|++++|.+.. .+ .+..+++|+.|++++|.+...+..+..+++|++|++++|.+++. + .+..+
T Consensus 39 ~l~~~~~~l~~L~~L~ls~n~l~~-l~-~~~~l~~L~~L~l~~n~l~~l~~~~~~~~~L~~L~L~~N~l~~l-~-~~~~l 114 (198)
T 1ds9_A 39 KMDATLSTLKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIKKIENLDAVADTLEELWISYNQIASL-S-GIEKL 114 (198)
T ss_dssp CCHHHHHHTTTCSEEECSEEEESC-CC-CHHHHTTCCEEEEEEEEECSCSSHHHHHHHCSEEEEEEEECCCH-H-HHHHH
T ss_pred hhhHHHhcCCCCCEEECCCCCCcc-cc-ccccCCCCCEEECCCCCcccccchhhcCCcCCEEECcCCcCCcC-C-ccccC
Confidence 344589999999999999999985 55 88899999999999999986666666789999999999999974 4 68888
Q ss_pred CcceEEeCCCCcccccCc-ccccccCceeEEeccCCccCCCCC
Q 036411 445 STLLTLDLRDNKFFGRIP-HQINELSNLHFLLLRGNSLQGRIP 486 (487)
Q Consensus 445 ~~L~~L~l~~~~~~~~~~-~~l~~l~~L~~L~l~~~~~~~~~p 486 (487)
++|+.|++++|.++...+ ..+..+++|++|++++|++.+.+|
T Consensus 115 ~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~ 157 (198)
T 1ds9_A 115 VNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYK 157 (198)
T ss_dssp HHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHH
T ss_pred CCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCccccccc
Confidence 999999999999964332 478899999999999999865543
|
| >3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D | Back alignment and structure |
|---|
Probab=99.35 E-value=2.5e-12 Score=105.63 Aligned_cols=106 Identities=20% Similarity=0.248 Sum_probs=76.6
Q ss_pred cccEEEccCCccCCCchhhhcccccccEEecCCccccCcchhhhccCcCCcEEeccCCcccccccc-ccCCCcceEEEee
Q 036411 351 LLDVLDVSNNKLSGDIPHWIGNFSVLWLLLMSENYLQGSIPVQLGNLESLEFIDISENGLSVSMVS-LSNLSSVKHIYLH 429 (487)
Q Consensus 351 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~-~~~~~~L~~L~l~ 429 (487)
+.+.++++++.++ .+|..+ .+++++|++++|.+++..+..|..+++|+.|++++|+++..... +..+++|++|+++
T Consensus 10 ~~~~l~~s~n~l~-~ip~~~--~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~ 86 (170)
T 3g39_A 10 SGTTVDCSGKSLA-SVPTGI--PTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLN 86 (170)
T ss_dssp ETTEEECTTSCCS-SCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred CCCEEEeCCCCcC-ccCccC--CCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECC
Confidence 4577888888776 345443 26778888888888766677777778888888888877655444 3577778888888
Q ss_pred CcccCCcchHhhhccCcceEEeCCCCcccc
Q 036411 430 NNAINGLIPIALLRSSTLLTLDLRDNKFFG 459 (487)
Q Consensus 430 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~ 459 (487)
+|.+++..+..+..+++|+.|+|++|++.+
T Consensus 87 ~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c 116 (170)
T 3g39_A 87 DNQLKSIPRGAFDNLKSLTHIWLLNNPWDC 116 (170)
T ss_dssp SSCCCCCCTTTTTTCTTCCEEECCSSCBCT
T ss_pred CCccCEeCHHHhcCCCCCCEEEeCCCCCCC
Confidence 777777766667777778888887777753
|
| >3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.31 E-value=2.5e-13 Score=126.25 Aligned_cols=182 Identities=14% Similarity=0.122 Sum_probs=127.8
Q ss_pred cccCcEEecccccCCCCCchhhh-----cCCCCCcEEECCCCccCCCCCcCCc-CCCCccEEEcCCCcccccccccc---
Q 036411 276 MKELITLDLSRNNFSGELPRSIF-----SSCLSLETLDLSNNNFYGQLFPNFM-NLTHLSSLRLNNNHFSGKMADGL--- 346 (487)
Q Consensus 276 ~~~L~~L~l~~~~~~~~~~~~~~-----~~~~~L~~L~l~~~~~~~~~~~~~~-~~~~L~~L~l~~~~~~~~~~~~~--- 346 (487)
.+.|+.|++++|.+. ......+ ..+++|++|++++|.+.+.....+. .+++|++|++++|.++......+
T Consensus 71 ~~~L~~L~Ls~n~l~-~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~ 149 (372)
T 3un9_A 71 LSSLRQLNLAGVRMT-PVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDL 149 (372)
T ss_dssp HTTCCEEECTTSCCC-HHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHH
T ss_pred HhhCCEEEecCCCCC-HHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHH
Confidence 578999999999987 3332222 2347999999999988643333332 35789999999999875544443
Q ss_pred --cCCCcccEEEccCCccCCC----chhhhcccccccEEecCCccccCcc----hhhhccCcCCcEEeccCCcccc----
Q 036411 347 --LSSTLLDVLDVSNNKLSGD----IPHWIGNFSVLWLLLMSENYLQGSI----PVQLGNLESLEFIDISENGLSV---- 412 (487)
Q Consensus 347 --~~~~~L~~L~l~~~~~~~~----~~~~~~~~~~L~~L~l~~~~~~~~~----~~~~~~~~~L~~l~l~~~~~~~---- 412 (487)
...+.|++|++++|.++.. ++..+..+++|++|++++|.+.+.. ...+...++|+.|++++|.+..
T Consensus 150 L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~ 229 (372)
T 3un9_A 150 LLHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAAL 229 (372)
T ss_dssp HHSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHH
T ss_pred HHhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHH
Confidence 3467899999999998643 3445577899999999999887533 4456778899999999999852
Q ss_pred -ccccccCCCcceEEEeeCcccCCcchHhhhcc---C--cceEEe--CCCCccc
Q 036411 413 -SMVSLSNLSSVKHIYLHNNAINGLIPIALLRS---S--TLLTLD--LRDNKFF 458 (487)
Q Consensus 413 -~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~---~--~L~~L~--l~~~~~~ 458 (487)
....+...++|++|++++|.++......+... . .|+.+. +..+.+.
T Consensus 230 ~l~~~L~~~~~L~~L~Ls~N~i~~~g~~~L~~~~~~~~~~L~~l~~ll~~~~~~ 283 (372)
T 3un9_A 230 ALARAAREHPSLELLHLYFNELSSEGRQVLRDLGGAAEGGARVVVSLTEGTAVS 283 (372)
T ss_dssp HHHHHHHHCSSCCEEECTTSSCCHHHHHHHHHCC------CEEECCCC----CH
T ss_pred HHHHHHHhCCCCCEEeccCCCCCHHHHHHHHHHhcCCCccchhhHhhhcCCccC
Confidence 23334467899999999999987655555433 2 167776 6666653
|
| >2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus} | Back alignment and structure |
|---|
Probab=99.30 E-value=6.4e-12 Score=103.53 Aligned_cols=104 Identities=17% Similarity=0.226 Sum_probs=78.9
Q ss_pred ccEEEccCCccCCCchhhhcccccccEEecCCccccCcchhhhccCcCCcEEeccCCcccccccc-ccCCCcceEEEeeC
Q 036411 352 LDVLDVSNNKLSGDIPHWIGNFSVLWLLLMSENYLQGSIPVQLGNLESLEFIDISENGLSVSMVS-LSNLSSVKHIYLHN 430 (487)
Q Consensus 352 L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~-~~~~~~L~~L~l~~ 430 (487)
-+.++++++++. .+|..+. ++|++|++++|.+.+..+..|..+++|+.|++++|+++..+.. +..+++|++|++++
T Consensus 14 ~~~l~~~~n~l~-~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~ 90 (174)
T 2r9u_A 14 QTLVNCQNIRLA-SVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLND 90 (174)
T ss_dssp SSEEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CcEEEeCCCCCC-ccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCC
Confidence 367888888875 4555443 7888888888888866677788888888888888888665554 45778888888888
Q ss_pred cccCCcchHhhhccCcceEEeCCCCccc
Q 036411 431 NAINGLIPIALLRSSTLLTLDLRDNKFF 458 (487)
Q Consensus 431 ~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 458 (487)
|.++...+..+..+++|+.|++++|++.
T Consensus 91 N~l~~l~~~~~~~l~~L~~L~L~~N~~~ 118 (174)
T 2r9u_A 91 NHLKSIPRGAFDNLKSLTHIYLYNNPWD 118 (174)
T ss_dssp SCCCCCCTTTTTTCTTCSEEECCSSCBC
T ss_pred CccceeCHHHhccccCCCEEEeCCCCcc
Confidence 8888776666777888888888888875
|
| >3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D | Back alignment and structure |
|---|
Probab=99.18 E-value=1.5e-10 Score=95.04 Aligned_cols=85 Identities=26% Similarity=0.261 Sum_probs=36.5
Q ss_pred ccCcEEecccccCCCCCchhhhcCCCCCcEEECCCCccCCCCCcCCcCCCCccEEEcCCCcccccccccccCCCcccEEE
Q 036411 277 KELITLDLSRNNFSGELPRSIFSSCLSLETLDLSNNNFYGQLFPNFMNLTHLSSLRLNNNHFSGKMADGLLSSTLLDVLD 356 (487)
Q Consensus 277 ~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~ 356 (487)
++++.|++++|.+. .++...|..+++|++|++++|.+.+..+..|..+++|+.|++++|.+.+..+..+..+++|+.|+
T Consensus 30 ~~l~~L~L~~N~i~-~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~ 108 (170)
T 3g39_A 30 TTTQVLYLYDNQIT-KLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQLKSIPRGAFDNLKSLTHIW 108 (170)
T ss_dssp TTCSEEECCSSCCC-CCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred CCCcEEEcCCCcCC-ccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCCccCEeCHHHhcCCCCCCEEE
Confidence 34444444444444 33333344444444444444444433333334444444444444444433333344444444444
Q ss_pred ccCCcc
Q 036411 357 VSNNKL 362 (487)
Q Consensus 357 l~~~~~ 362 (487)
+++|++
T Consensus 109 L~~N~~ 114 (170)
T 3g39_A 109 LLNNPW 114 (170)
T ss_dssp CCSSCB
T ss_pred eCCCCC
Confidence 444443
|
| >2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus} | Back alignment and structure |
|---|
Probab=99.15 E-value=2.4e-10 Score=94.03 Aligned_cols=104 Identities=20% Similarity=0.297 Sum_probs=64.7
Q ss_pred cEEEccCCcccccCCcccccccCceEEEEccCCCCCCCcchhhhccccCcEEecccccCCCCCchhhhcCCCCCcEEECC
Q 036411 231 RHLDISTNNFSGKLPENLGIVFQKLIYLDVSKNSFEGNIPYSISEMKELITLDLSRNNFSGELPRSIFSSCLSLETLDLS 310 (487)
Q Consensus 231 ~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~ 310 (487)
+.++++++.+. .+|..+ +++|++|++++|.+.+..+..+..+++|+.|++++|.+. .++...|..+++|+.|+++
T Consensus 15 ~~l~~~~n~l~-~iP~~~---~~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~~l~~L~~L~L~ 89 (174)
T 2r9u_A 15 TLVNCQNIRLA-SVPAGI---PTDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLT-AIPTGVFDKLTQLTQLDLN 89 (174)
T ss_dssp SEEECCSSCCS-SCCSCC---CTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECC
T ss_pred cEEEeCCCCCC-ccCCCc---CCCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCC-ccChhHhCCcchhhEEECC
Confidence 45666666554 445443 256667777777666555556666667777777777666 5666656666667777776
Q ss_pred CCccCCCCCcCCcCCCCccEEEcCCCccc
Q 036411 311 NNNFYGQLFPNFMNLTHLSSLRLNNNHFS 339 (487)
Q Consensus 311 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 339 (487)
+|.+.+..+..+..+++|+.|++.+|++.
T Consensus 90 ~N~l~~l~~~~~~~l~~L~~L~L~~N~~~ 118 (174)
T 2r9u_A 90 DNHLKSIPRGAFDNLKSLTHIYLYNNPWD 118 (174)
T ss_dssp SSCCCCCCTTTTTTCTTCSEEECCSSCBC
T ss_pred CCccceeCHHHhccccCCCEEEeCCCCcc
Confidence 66666544444556666666666666554
|
| >2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=99.04 E-value=2.6e-10 Score=104.99 Aligned_cols=200 Identities=11% Similarity=0.128 Sum_probs=99.9
Q ss_pred cccCcEEecccccCCC-CCc------hhhhcCCCCCcEEECCCCccCC---------CCCcCCcCCCCccEEEcCCCccc
Q 036411 276 MKELITLDLSRNNFSG-ELP------RSIFSSCLSLETLDLSNNNFYG---------QLFPNFMNLTHLSSLRLNNNHFS 339 (487)
Q Consensus 276 ~~~L~~L~l~~~~~~~-~~~------~~~~~~~~~L~~L~l~~~~~~~---------~~~~~~~~~~~L~~L~l~~~~~~ 339 (487)
.+.++.|.+..+...+ ... ......+++|+.|.+.+....+ .....+..+|+|++|.+.++.-.
T Consensus 106 ~~~v~~L~lg~~~~~~~~~~~~~~~L~~s~~~l~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~~P~L~~L~L~g~~~l 185 (362)
T 2ra8_A 106 LPSLKQITIGXWGYEGEDCSDIADGIVENKEKFAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNNL 185 (362)
T ss_dssp GGGCSEEEECCCCSSSCCSHHHHHHHHTTHHHHTTCSEEEECCCCTTTCCGGGCBCCBCHHHHHTCTTCCEEEEECCBTC
T ss_pred chhcceEEEcccccCCCcHHHHHHHHHHhhhhcchhhheeecCcchhhcccccccccCHHHHHhcCCCCcEEEEeCCCCc
Confidence 4567888887665431 210 0112346789999886542211 11122345677777777766211
Q ss_pred ccccccccCCCcccEEEccCCccCCCchhhhc--ccccccEEecCCc--cccCc-----chhhh--ccCcCCcEEeccCC
Q 036411 340 GKMADGLLSSTLLDVLDVSNNKLSGDIPHWIG--NFSVLWLLLMSEN--YLQGS-----IPVQL--GNLESLEFIDISEN 408 (487)
Q Consensus 340 ~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~--~~~~L~~L~l~~~--~~~~~-----~~~~~--~~~~~L~~l~l~~~ 408 (487)
..+. + ..++|+.|++..|.+.......+. .+|+|++|+++.+ ...+. +...+ ..+|+|+.|++.+|
T Consensus 186 -~l~~-~-~~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~~~~~p~Lr~L~L~~~ 262 (362)
T 2ra8_A 186 -SIGK-K-PRPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDA 262 (362)
T ss_dssp -BCCS-C-BCTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTGGGSCTTTCTTCCEEEEESC
T ss_pred -eecc-c-cCCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccchhHHHHHHHHhcCCCCCcCEEeCCCC
Confidence 1111 2 256777777777766533333333 5677777776421 11000 01111 23567777777666
Q ss_pred ccccc-cccc---cCCCcceEEEeeCcccCCcchH----hhhccCcceEEeCCCCcccccCcccccc-cCceeEEeccCC
Q 036411 409 GLSVS-MVSL---SNLSSVKHIYLHNNAINGLIPI----ALLRSSTLLTLDLRDNKFFGRIPHQINE-LSNLHFLLLRGN 479 (487)
Q Consensus 409 ~~~~~-~~~~---~~~~~L~~L~l~~~~~~~~~~~----~~~~~~~L~~L~l~~~~~~~~~~~~l~~-l~~L~~L~l~~~ 479 (487)
.+... ...+ ..+|+|+.|+++.|.+.+.... .+..+++|+.|++++|.+++.....+.. + ...++++++
T Consensus 263 ~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~d~~~~~l~~al--g~~~~~~~~ 340 (362)
T 2ra8_A 263 EEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLSDEMKKELQKSL--PMKIDVSDS 340 (362)
T ss_dssp TTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCCHHHHHHHHHHC--CSEEECCSB
T ss_pred CCchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCCHHHHHHHHHHc--CCEEEecCC
Confidence 65311 1111 2456677777766666543222 2234566777777766654333223332 2 234555554
Q ss_pred c
Q 036411 480 S 480 (487)
Q Consensus 480 ~ 480 (487)
+
T Consensus 341 ~ 341 (362)
T 2ra8_A 341 Q 341 (362)
T ss_dssp C
T ss_pred c
Confidence 3
|
| >2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 | Back alignment and structure |
|---|
Probab=98.97 E-value=1.4e-09 Score=100.77 Aligned_cols=103 Identities=21% Similarity=0.194 Sum_probs=80.7
Q ss_pred cEEEccCC-ccCCCchhhhcccccccEEecCC-ccccCcchhhhccCcCCcEEeccCCccccccc-cccCCCcceEEEee
Q 036411 353 DVLDVSNN-KLSGDIPHWIGNFSVLWLLLMSE-NYLQGSIPVQLGNLESLEFIDISENGLSVSMV-SLSNLSSVKHIYLH 429 (487)
Q Consensus 353 ~~L~l~~~-~~~~~~~~~~~~~~~L~~L~l~~-~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~-~~~~~~~L~~L~l~ 429 (487)
..++.+++ .++ .+|. +..+++|++|++++ |.+....+..|..+++|+.|+|++|.++.... .|..+++|++|+++
T Consensus 11 ~~v~~~~~n~l~-~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~ 88 (347)
T 2ifg_A 11 SGLRCTRDGALD-SLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLS 88 (347)
T ss_dssp SCEECCSSCCCT-TTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECC
T ss_pred CEEEcCCCCCCC-ccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCC
Confidence 45677777 776 4677 88888899999986 88886666778888888889888888865544 45688888888888
Q ss_pred CcccCCcchHhhhccCcceEEeCCCCccc
Q 036411 430 NNAINGLIPIALLRSSTLLTLDLRDNKFF 458 (487)
Q Consensus 430 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 458 (487)
+|+++...+..+..++ |+.|+|.+|++.
T Consensus 89 ~N~l~~~~~~~~~~~~-L~~l~l~~N~~~ 116 (347)
T 2ifg_A 89 FNALESLSWKTVQGLS-LQELVLSGNPLH 116 (347)
T ss_dssp SSCCSCCCSTTTCSCC-CCEEECCSSCCC
T ss_pred CCccceeCHHHcccCC-ceEEEeeCCCcc
Confidence 8888877666666555 888888888875
|
| >2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=98.89 E-value=5.3e-09 Score=96.26 Aligned_cols=156 Identities=17% Similarity=0.200 Sum_probs=97.5
Q ss_pred hhcCCCCCcEEECCCCccCCCCCcCCcCCCCccEEEcCCCccccccccccc--CCCcccEEEccCC--ccC-C----Cch
Q 036411 297 IFSSCLSLETLDLSNNNFYGQLFPNFMNLTHLSSLRLNNNHFSGKMADGLL--SSTLLDVLDVSNN--KLS-G----DIP 367 (487)
Q Consensus 297 ~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~--~~~~L~~L~l~~~--~~~-~----~~~ 367 (487)
++..+|+|+.|++.+|.-... ..+ .+++|++|.+..|.+.......+. .+++|+.|+++.+ ... . .+.
T Consensus 167 ll~~~P~L~~L~L~g~~~l~l--~~~-~~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~ 243 (362)
T 2ra8_A 167 VLDAMPLLNNLKIKGTNNLSI--GKK-PRPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFR 243 (362)
T ss_dssp HHHTCTTCCEEEEECCBTCBC--CSC-BCTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTG
T ss_pred HHhcCCCCcEEEEeCCCCcee--ccc-cCCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccchhHHHHH
Confidence 346677888888877631111 123 367888888887776544433333 5788888887531 111 1 111
Q ss_pred hhh--cccccccEEecCCccccCcchhhh---ccCcCCcEEeccCCcccc-----ccccccCCCcceEEEeeCcccCCcc
Q 036411 368 HWI--GNFSVLWLLLMSENYLQGSIPVQL---GNLESLEFIDISENGLSV-----SMVSLSNLSSVKHIYLHNNAINGLI 437 (487)
Q Consensus 368 ~~~--~~~~~L~~L~l~~~~~~~~~~~~~---~~~~~L~~l~l~~~~~~~-----~~~~~~~~~~L~~L~l~~~~~~~~~ 437 (487)
..+ ..+++|++|++.+|.+.+.....+ ..+++|+.|+++.|.+.. ....+..+++|+.|++++|.++...
T Consensus 244 ~~l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~d~~ 323 (362)
T 2ra8_A 244 PLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLSDEM 323 (362)
T ss_dssp GGSCTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCCHHH
T ss_pred HHHhcCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCCHHH
Confidence 122 247889999998887764333333 357889999999988753 2333356789999999999887655
Q ss_pred hHhhhccCcceEEeCCCCc
Q 036411 438 PIALLRSSTLLTLDLRDNK 456 (487)
Q Consensus 438 ~~~~~~~~~L~~L~l~~~~ 456 (487)
..++...- ...+++++++
T Consensus 324 ~~~l~~al-g~~~~~~~~~ 341 (362)
T 2ra8_A 324 KKELQKSL-PMKIDVSDSQ 341 (362)
T ss_dssp HHHHHHHC-CSEEECCSBC
T ss_pred HHHHHHHc-CCEEEecCCc
Confidence 55555311 3568888776
|
| >2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 | Back alignment and structure |
|---|
Probab=98.85 E-value=6.1e-09 Score=96.43 Aligned_cols=103 Identities=20% Similarity=0.118 Sum_probs=71.3
Q ss_pred EEECCCC-ccCCCCCcCCcCCCCccEEEcCC-CcccccccccccCCCcccEEEccCCccCCCchhhhcccccccEEecCC
Q 036411 306 TLDLSNN-NFYGQLFPNFMNLTHLSSLRLNN-NHFSGKMADGLLSSTLLDVLDVSNNKLSGDIPHWIGNFSVLWLLLMSE 383 (487)
Q Consensus 306 ~L~l~~~-~~~~~~~~~~~~~~~L~~L~l~~-~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~ 383 (487)
.++.+++ .+.+ ++. +..+++|+.|++++ |.+.+..+..|..+++|+.|++++|++++..+..|..+++|++|+|++
T Consensus 12 ~v~~~~~n~l~~-ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~ 89 (347)
T 2ifg_A 12 GLRCTRDGALDS-LHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSF 89 (347)
T ss_dssp CEECCSSCCCTT-TTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCS
T ss_pred EEEcCCCCCCCc-cCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCC
Confidence 4566666 5654 444 77777788888875 777766666777777788888888777766677777777777777777
Q ss_pred ccccCcchhhhccCcCCcEEeccCCccc
Q 036411 384 NYLQGSIPVQLGNLESLEFIDISENGLS 411 (487)
Q Consensus 384 ~~~~~~~~~~~~~~~~L~~l~l~~~~~~ 411 (487)
|.+....+..+..++ |+.|++.+|++.
T Consensus 90 N~l~~~~~~~~~~~~-L~~l~l~~N~~~ 116 (347)
T 2ifg_A 90 NALESLSWKTVQGLS-LQELVLSGNPLH 116 (347)
T ss_dssp SCCSCCCSTTTCSCC-CCEEECCSSCCC
T ss_pred CccceeCHHHcccCC-ceEEEeeCCCcc
Confidence 777754444454444 777777777664
|
| >1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1 | Back alignment and structure |
|---|
Probab=98.68 E-value=9.9e-09 Score=85.22 Aligned_cols=115 Identities=10% Similarity=0.085 Sum_probs=67.2
Q ss_pred cccccCCCcccEEEccCC-ccCCC----chhhhcccccccEEecCCccccCcc----hhhhccCcCCcEEeccCCcccc-
Q 036411 343 ADGLLSSTLLDVLDVSNN-KLSGD----IPHWIGNFSVLWLLLMSENYLQGSI----PVQLGNLESLEFIDISENGLSV- 412 (487)
Q Consensus 343 ~~~~~~~~~L~~L~l~~~-~~~~~----~~~~~~~~~~L~~L~l~~~~~~~~~----~~~~~~~~~L~~l~l~~~~~~~- 412 (487)
...+...+.|++|++++| .+... +...+...++|++|++++|.+.+.. ...+...++|+.|++++|.+..
T Consensus 29 ~~~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~ 108 (185)
T 1io0_A 29 KRIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGS 108 (185)
T ss_dssp HHHHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHH
T ss_pred HHHHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHH
Confidence 345556777888888887 66532 2334455677777777777765422 2234445667777777776632
Q ss_pred ----ccccccCCCcceEEEe--eCcccCCcc----hHhhhccCcceEEeCCCCcc
Q 036411 413 ----SMVSLSNLSSVKHIYL--HNNAINGLI----PIALLRSSTLLTLDLRDNKF 457 (487)
Q Consensus 413 ----~~~~~~~~~~L~~L~l--~~~~~~~~~----~~~~~~~~~L~~L~l~~~~~ 457 (487)
....+...+.|++|++ ++|.+.... ..++...++|+.|++++|.+
T Consensus 109 g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i 163 (185)
T 1io0_A 109 GILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQ 163 (185)
T ss_dssp HHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSH
T ss_pred HHHHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCC
Confidence 2344445556666666 556665432 23344456666666666665
|
| >1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1 | Back alignment and structure |
|---|
Probab=98.54 E-value=5.7e-08 Score=80.57 Aligned_cols=115 Identities=13% Similarity=0.042 Sum_probs=57.5
Q ss_pred hhhhcccccccEEecCCc-cccCc----chhhhccCcCCcEEeccCCccc-----cccccccCCCcceEEEeeCcccCCc
Q 036411 367 PHWIGNFSVLWLLLMSEN-YLQGS----IPVQLGNLESLEFIDISENGLS-----VSMVSLSNLSSVKHIYLHNNAINGL 436 (487)
Q Consensus 367 ~~~~~~~~~L~~L~l~~~-~~~~~----~~~~~~~~~~L~~l~l~~~~~~-----~~~~~~~~~~~L~~L~l~~~~~~~~ 436 (487)
...+..++.|++|++++| .+... +...+...++|++|++++|.+. .....+...+.|++|++++|.+...
T Consensus 29 ~~~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~ 108 (185)
T 1io0_A 29 KRIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGS 108 (185)
T ss_dssp HHHHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHH
T ss_pred HHHHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHH
Confidence 334445566666666665 55432 1222344556666666666552 1222233445566666666665542
Q ss_pred c----hHhhhccCcceEEeC--CCCccccc----CcccccccCceeEEeccCCcc
Q 036411 437 I----PIALLRSSTLLTLDL--RDNKFFGR----IPHQINELSNLHFLLLRGNSL 481 (487)
Q Consensus 437 ~----~~~~~~~~~L~~L~l--~~~~~~~~----~~~~l~~l~~L~~L~l~~~~~ 481 (487)
. ..++...++|+.|+| ++|.+++. +.+.+...++|++|++++|.+
T Consensus 109 g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i 163 (185)
T 1io0_A 109 GILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQ 163 (185)
T ss_dssp HHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSH
T ss_pred HHHHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCC
Confidence 2 233444455666666 55655432 223444445666666666654
|
| >3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A | Back alignment and structure |
|---|
Probab=98.47 E-value=8.8e-08 Score=77.15 Aligned_cols=34 Identities=6% Similarity=0.068 Sum_probs=15.6
Q ss_pred CCcEEECCCCccCCCcchhccCCCCccEEeccCc
Q 036411 58 NLLELDLSSNNFEGHLPQCLNNLTHLKVLDISYN 91 (487)
Q Consensus 58 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~ 91 (487)
+|++||+++|.+++.....+.+|++|++|++++|
T Consensus 62 ~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C 95 (176)
T 3e4g_A 62 KIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKC 95 (176)
T ss_dssp CEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESC
T ss_pred eEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCC
Confidence 3444444444444433333444444444444444
|
| >3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A | Back alignment and structure |
|---|
Probab=98.35 E-value=5.6e-07 Score=72.48 Aligned_cols=88 Identities=13% Similarity=0.054 Sum_probs=62.4
Q ss_pred CCCCccEEeccCccccCCccccccCCCCCcEEeccccccCcchhHHHhhc----cccceEEEeccCCCccccccccccCC
Q 036411 79 NLTHLKVLDISYNQLSGNFPSVLTNLTSLEYLDLSFIDFQGTFLINSLAN----HSKLEVLVLSSGNDMLQVKTENWLPT 154 (487)
Q Consensus 79 ~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~----~~~L~~l~l~~~~~~~~~~~~~~~~~ 154 (487)
.-.+|++|++++|.+++..-..+..|++|++|++++|......-...++. +++|++|++++|..+++.....+..+
T Consensus 59 ~~~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~ 138 (176)
T 3e4g_A 59 DKYKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHF 138 (176)
T ss_dssp TCCCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGC
T ss_pred CCceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcC
Confidence 34679999999999887777778899999999999996333334444554 35788888888877776655555555
Q ss_pred CCCceeeccccc
Q 036411 155 YPLKVLQLSHCH 166 (487)
Q Consensus 155 ~~L~~L~l~~~~ 166 (487)
++|++|++++|.
T Consensus 139 ~~L~~L~L~~c~ 150 (176)
T 3e4g_A 139 RNLKYLFLSDLP 150 (176)
T ss_dssp TTCCEEEEESCT
T ss_pred CCCCEEECCCCC
Confidence 555555555553
|
| >3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A | Back alignment and structure |
|---|
Probab=98.20 E-value=5.1e-07 Score=78.62 Aligned_cols=104 Identities=16% Similarity=0.088 Sum_probs=71.1
Q ss_pred hcccccccE--EecCCcccc---CcchhhhccCcCCcEEeccCCcccccc---ccccCCCcceEEEeeCcccCCcchHhh
Q 036411 370 IGNFSVLWL--LLMSENYLQ---GSIPVQLGNLESLEFIDISENGLSVSM---VSLSNLSSVKHIYLHNNAINGLIPIAL 441 (487)
Q Consensus 370 ~~~~~~L~~--L~l~~~~~~---~~~~~~~~~~~~L~~l~l~~~~~~~~~---~~~~~~~~L~~L~l~~~~~~~~~~~~~ 441 (487)
+...+.|+. ++++.|... ..+.....++++|+.|+|++|++.... ..+..+++|+.|++++|.+.+. ..+
T Consensus 137 l~~dp~L~~~~l~l~~N~~~~~~~~l~i~~~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~--~~l 214 (267)
T 3rw6_A 137 LRSDPDLVAQNIDVVLNRRSCMAATLRIIEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE--REL 214 (267)
T ss_dssp GGGCHHHHHTTCCCCTTSHHHHHHHHHHHHHHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG--GGG
T ss_pred cCCCcchhhcCccccCCHHHHHHHHHHHHHhhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc--hhh
Confidence 334455555 555666332 111222356889999999999986432 3344789999999999999875 223
Q ss_pred hccC--cceEEeCCCCcccccCc-------ccccccCceeEEe
Q 036411 442 LRSS--TLLTLDLRDNKFFGRIP-------HQINELSNLHFLL 475 (487)
Q Consensus 442 ~~~~--~L~~L~l~~~~~~~~~~-------~~l~~l~~L~~L~ 475 (487)
..++ +|+.|+|++|++.+..| ..+..+|+|+.||
T Consensus 215 ~~l~~l~L~~L~L~~Npl~~~~~~~~~y~~~il~~~P~L~~LD 257 (267)
T 3rw6_A 215 DKIKGLKLEELWLDGNSLCDTFRDQSTYISAIRERFPKLLRLD 257 (267)
T ss_dssp GGGTTSCCSEEECTTSTTGGGCSSHHHHHHHHHHHCTTCCEES
T ss_pred hhcccCCcceEEccCCcCccccCcchhHHHHHHHHCcccCeEC
Confidence 3334 89999999999876554 3577899999876
|
| >3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A | Back alignment and structure |
|---|
Probab=98.13 E-value=2.5e-06 Score=74.25 Aligned_cols=109 Identities=21% Similarity=0.226 Sum_probs=74.1
Q ss_pred cccccccccE--EecCCcccc---ccccccccCCCCCcEEEccCccccCCcc-cccccCCCCCcEEECCCCccCCCcchh
Q 036411 3 SFGSLKQLKI--LNLGFNFFI---DSILPYLNTLTSLTTLNLRYNKIEGSRT-KQGICNLKNLLELDLSSNNFEGHLPQC 76 (487)
Q Consensus 3 ~~~~~~~L~~--L~l~~~~~~---~~~~~~~~~~~~L~~L~l~~~~~~~~~~-~~~~~~~~~L~~L~l~~~~~~~~~~~~ 76 (487)
.|...+.|+. +++..|... .........+++|++|++++|.+.+... +..+..+++|+.|+|++|.+.+. ..
T Consensus 136 ~l~~dp~L~~~~l~l~~N~~~~~~~~l~i~~~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~--~~ 213 (267)
T 3rw6_A 136 GLRSDPDLVAQNIDVVLNRRSCMAATLRIIEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE--RE 213 (267)
T ss_dssp TGGGCHHHHHTTCCCCTTSHHHHHHHHHHHHHHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG--GG
T ss_pred HcCCCcchhhcCccccCCHHHHHHHHHHHHHhhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc--hh
Confidence 3455555655 566655321 1111222568999999999999975432 34567899999999999999754 23
Q ss_pred ccCCC--CccEEeccCccccCCcc-------ccccCCCCCcEEecc
Q 036411 77 LNNLT--HLKVLDISYNQLSGNFP-------SVLTNLTSLEYLDLS 113 (487)
Q Consensus 77 ~~~l~--~L~~L~l~~~~~~~~~~-------~~~~~~~~L~~L~l~ 113 (487)
+..+. +|++|++.+|.+....| ..+..+++|+.|+-.
T Consensus 214 l~~l~~l~L~~L~L~~Npl~~~~~~~~~y~~~il~~~P~L~~LDg~ 259 (267)
T 3rw6_A 214 LDKIKGLKLEELWLDGNSLCDTFRDQSTYISAIRERFPKLLRLDGH 259 (267)
T ss_dssp GGGGTTSCCSEEECTTSTTGGGCSSHHHHHHHHHHHCTTCCEESSC
T ss_pred hhhcccCCcceEEccCCcCccccCcchhHHHHHHHHCcccCeECCc
Confidence 44444 99999999998874333 346778999988764
|
| >1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1 | Back alignment and structure |
|---|
Probab=97.59 E-value=4.4e-05 Score=62.70 Aligned_cols=114 Identities=14% Similarity=0.103 Sum_probs=66.0
Q ss_pred ccccCCCcccEEEccCC-ccCC----CchhhhcccccccEEecCCccccCcc----hhhhccCcCCcEEeccCCccc---
Q 036411 344 DGLLSSTLLDVLDVSNN-KLSG----DIPHWIGNFSVLWLLLMSENYLQGSI----PVQLGNLESLEFIDISENGLS--- 411 (487)
Q Consensus 344 ~~~~~~~~L~~L~l~~~-~~~~----~~~~~~~~~~~L~~L~l~~~~~~~~~----~~~~~~~~~L~~l~l~~~~~~--- 411 (487)
......+.|++|+++++ ++.. .+...+...+.|+.|++++|.+.+.. .+.+...++|+.|+|+.|.+.
T Consensus 35 ~ll~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~G 114 (197)
T 1pgv_A 35 RLREDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPEL 114 (197)
T ss_dssp HHHTTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHH
T ss_pred HHHhcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHH
Confidence 34455677888888875 6543 23445556677788888777775422 233445567777777777663
Q ss_pred --cccccccCCCcceEEEeeCc---ccCCc----chHhhhccCcceEEeCCCCcc
Q 036411 412 --VSMVSLSNLSSVKHIYLHNN---AINGL----IPIALLRSSTLLTLDLRDNKF 457 (487)
Q Consensus 412 --~~~~~~~~~~~L~~L~l~~~---~~~~~----~~~~~~~~~~L~~L~l~~~~~ 457 (487)
.....+..-+.|++|+++++ .+... +..++..-++|+.|+++.+.+
T Consensus 115 a~ala~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~~~ 169 (197)
T 1pgv_A 115 LARLLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFASM 169 (197)
T ss_dssp HHHHHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCCH
T ss_pred HHHHHHHHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCCCc
Confidence 23333444455777777654 22321 233445556677777665554
|
| >1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1 | Back alignment and structure |
|---|
Probab=97.36 E-value=0.00025 Score=58.15 Aligned_cols=39 Identities=21% Similarity=0.335 Sum_probs=16.6
Q ss_pred CCcccEEEccCCccCC----CchhhhcccccccEEecCCcccc
Q 036411 349 STLLDVLDVSNNKLSG----DIPHWIGNFSVLWLLLMSENYLQ 387 (487)
Q Consensus 349 ~~~L~~L~l~~~~~~~----~~~~~~~~~~~L~~L~l~~~~~~ 387 (487)
.+.|+.|++++|++.+ .+...+...+.|++|+++.|.+.
T Consensus 69 N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig 111 (197)
T 1pgv_A 69 SKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLT 111 (197)
T ss_dssp CSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCC
T ss_pred CCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCC
Confidence 3444444444444432 22223333444444444444443
|
| >3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A* | Back alignment and structure |
|---|
Probab=96.93 E-value=0.0011 Score=50.81 Aligned_cols=55 Identities=22% Similarity=0.271 Sum_probs=38.9
Q ss_pred EEeccCCccc--cccccccCCCcceEEEeeCcccCCcchHhhhccCcceEEeCCCCccc
Q 036411 402 FIDISENGLS--VSMVSLSNLSSVKHIYLHNNAINGLIPIALLRSSTLLTLDLRDNKFF 458 (487)
Q Consensus 402 ~l~l~~~~~~--~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 458 (487)
.++.++.+++ ..+..+. ++|+.|++++|.++.+.+..|..+++|+.|+|++|++.
T Consensus 12 ~v~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~ 68 (130)
T 3rfe_A 12 LVDCGRRGLTWASLPTAFP--VDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWR 68 (130)
T ss_dssp EEECCSSCCCTTTSCSCCC--TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCB
T ss_pred EEEeCCCCCccccCCCCCC--cCCCEEECCCCcCCccChhhhhhccccCEEEecCCCee
Confidence 5667777765 4444332 46788888888888777777777788888888888764
|
| >3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A* | Back alignment and structure |
|---|
Probab=96.36 E-value=0.0056 Score=46.73 Aligned_cols=56 Identities=18% Similarity=0.164 Sum_probs=38.7
Q ss_pred EEecCCcccc-CcchhhhccCcCCcEEeccCCccccccc-cccCCCcceEEEeeCcccCC
Q 036411 378 LLLMSENYLQ-GSIPVQLGNLESLEFIDISENGLSVSMV-SLSNLSSVKHIYLHNNAING 435 (487)
Q Consensus 378 ~L~l~~~~~~-~~~~~~~~~~~~L~~l~l~~~~~~~~~~-~~~~~~~L~~L~l~~~~~~~ 435 (487)
.++.++..++ ..+|..+. ++|+.|+|++|.++.... .|..+++|+.|++.+|.+.-
T Consensus 12 ~v~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~C 69 (130)
T 3rfe_A 12 LVDCGRRGLTWASLPTAFP--VDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWRC 69 (130)
T ss_dssp EEECCSSCCCTTTSCSCCC--TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCBC
T ss_pred EEEeCCCCCccccCCCCCC--cCCCEEECCCCcCCccChhhhhhccccCEEEecCCCeec
Confidence 5677777664 23444433 468889999998865544 44578889999998887763
|
| >2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus} | Back alignment and structure |
|---|
Probab=86.22 E-value=0.65 Score=33.12 Aligned_cols=40 Identities=15% Similarity=0.067 Sum_probs=19.3
Q ss_pred cccccCCCCCcEEECCCCccCCCcchhccCCCCccEEeccC
Q 036411 50 KQGICNLKNLLELDLSSNNFEGHLPQCLNNLTHLKVLDISY 90 (487)
Q Consensus 50 ~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~ 90 (487)
..+|.+|.+|+++.|..+ ++.....+|.+|.+|+.+.+..
T Consensus 13 ~~aF~~c~~L~~i~iP~~-v~~Ig~~aF~~C~~L~~i~~~~ 52 (100)
T 2lz0_A 13 KSLFAGNTVIREITVQPN-IGLLYDGMFSGCTALEKLILTG 52 (100)
T ss_dssp SCTTTTCTTCCCEEECTT-SSCCCTTSSTTCTTCCCEEECC
T ss_pred HHHhcCCCCCcEEEcCCc-hheEcHHHHhccCCccEEEEcC
Confidence 344555555555555543 2223334455555555555543
|
| >2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus} | Back alignment and structure |
|---|
Probab=83.34 E-value=1.8 Score=30.75 Aligned_cols=48 Identities=10% Similarity=-0.033 Sum_probs=37.3
Q ss_pred ccccccccccccCCCCCcEEEccCccccCCcccccccCCCCCcEEECCCC
Q 036411 18 NFFIDSILPYLNTLTSLTTLNLRYNKIEGSRTKQGICNLKNLLELDLSSN 67 (487)
Q Consensus 18 ~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~ 67 (487)
..+..+...+|..|.+|+.+.|..+-- .+...+|.+|.+|+.+.+...
T Consensus 6 ~~vt~I~~~aF~~c~~L~~i~iP~~v~--~Ig~~aF~~C~~L~~i~~~~~ 53 (100)
T 2lz0_A 6 EPVVGMDKSLFAGNTVIREITVQPNIG--LLYDGMFSGCTALEKLILTGE 53 (100)
T ss_dssp CCCCSSCSCTTTTCTTCCCEEECTTSS--CCCTTSSTTCTTCCCEEECCS
T ss_pred CccCEecHHHhcCCCCCcEEEcCCchh--eEcHHHHhccCCccEEEEcCC
Confidence 345666677899999999999987632 356678999999999998764
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 487 | ||||
| d2omza2 | 384 | c.10.2.1 (A:33-416) Internalin A {Listeria monocyt | 1e-18 | |
| d2omza2 | 384 | c.10.2.1 (A:33-416) Internalin A {Listeria monocyt | 3e-10 | |
| d1ogqa_ | 313 | c.10.2.8 (A:) Polygalacturonase inhibiting protein | 4e-12 | |
| d1ogqa_ | 313 | c.10.2.8 (A:) Polygalacturonase inhibiting protein | 5e-12 | |
| d1ogqa_ | 313 | c.10.2.8 (A:) Polygalacturonase inhibiting protein | 2e-11 | |
| d1ogqa_ | 313 | c.10.2.8 (A:) Polygalacturonase inhibiting protein | 7e-11 | |
| d1ogqa_ | 313 | c.10.2.8 (A:) Polygalacturonase inhibiting protein | 2e-08 | |
| d1ogqa_ | 313 | c.10.2.8 (A:) Polygalacturonase inhibiting protein | 7e-06 | |
| d1ogqa_ | 313 | c.10.2.8 (A:) Polygalacturonase inhibiting protein | 5e-05 | |
| d1ogqa_ | 313 | c.10.2.8 (A:) Polygalacturonase inhibiting protein | 0.001 | |
| d1xkua_ | 305 | c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99 | 1e-11 | |
| d1xkua_ | 305 | c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99 | 2e-11 | |
| d1xkua_ | 305 | c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99 | 5e-10 | |
| d1xkua_ | 305 | c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99 | 6e-07 | |
| d1xkua_ | 305 | c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99 | 7e-06 | |
| d1z7xw1 | 460 | c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human ( | 7e-11 | |
| d1z7xw1 | 460 | c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human ( | 9e-09 | |
| d1z7xw1 | 460 | c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human ( | 8e-06 | |
| d1z7xw1 | 460 | c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human ( | 2e-05 | |
| d1z7xw1 | 460 | c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human ( | 4e-05 | |
| d1z7xw1 | 460 | c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human ( | 1e-04 | |
| d1z7xw1 | 460 | c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human ( | 4e-04 | |
| d1z7xw1 | 460 | c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human ( | 0.002 | |
| d1z7xw1 | 460 | c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human ( | 0.002 | |
| d1p9ag_ | 266 | c.10.2.7 (G:) von Willebrand factor binding domain | 4e-10 | |
| d1p9ag_ | 266 | c.10.2.7 (G:) von Willebrand factor binding domain | 3e-09 | |
| d1p9ag_ | 266 | c.10.2.7 (G:) von Willebrand factor binding domain | 2e-08 | |
| d1p9ag_ | 266 | c.10.2.7 (G:) von Willebrand factor binding domain | 8e-07 | |
| d1p9ag_ | 266 | c.10.2.7 (G:) von Willebrand factor binding domain | 0.003 | |
| d1ozna_ | 284 | c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept | 4e-10 | |
| d1ozna_ | 284 | c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept | 5e-09 | |
| d1ozna_ | 284 | c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept | 5e-08 | |
| d1ozna_ | 284 | c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept | 4e-07 | |
| d1ozna_ | 284 | c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept | 1e-06 | |
| d1ozna_ | 284 | c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept | 1e-04 | |
| d2astb2 | 284 | c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1 | 2e-09 | |
| d2astb2 | 284 | c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1 | 9e-08 | |
| d2astb2 | 284 | c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1 | 1e-07 | |
| d1jl5a_ | 353 | c.10.2.6 (A:) Leucine rich effector protein YopM { | 9e-08 | |
| d1jl5a_ | 353 | c.10.2.6 (A:) Leucine rich effector protein YopM { | 6e-05 | |
| d1jl5a_ | 353 | c.10.2.6 (A:) Leucine rich effector protein YopM { | 2e-04 | |
| d1jl5a_ | 353 | c.10.2.6 (A:) Leucine rich effector protein YopM { | 3e-04 | |
| d2ca6a1 | 344 | c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal dom | 1e-06 | |
| d2ca6a1 | 344 | c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal dom | 1e-06 | |
| d1xwdc1 | 242 | c.10.2.7 (C:18-259) Follicle-stimulating hormone r | 4e-06 | |
| d1w8aa_ | 192 | c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanoga | 2e-05 | |
| d1w8aa_ | 192 | c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanoga | 0.002 | |
| d1h6ua2 | 227 | c.10.2.1 (A:36-262) Internalin H {Listeria monocyt | 4e-05 | |
| d1h6ua2 | 227 | c.10.2.1 (A:36-262) Internalin H {Listeria monocyt | 2e-04 | |
| d1h6ua2 | 227 | c.10.2.1 (A:36-262) Internalin H {Listeria monocyt | 0.004 | |
| d2ifga3 | 156 | c.10.2.7 (A:36-191) High affinity nerve growth fac | 7e-04 | |
| d1dcea3 | 124 | c.10.2.2 (A:444-567) Rab geranylgeranyltransferase | 0.001 | |
| d1dcea3 | 124 | c.10.2.2 (A:444-567) Rab geranylgeranyltransferase | 0.002 | |
| d1h6ta2 | 210 | c.10.2.1 (A:31-240) Internalin B {Listeria monocyt | 0.001 |
| >d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin A species: Listeria monocytogenes [TaxId: 1639]
Score = 85.1 bits (209), Expect = 1e-18
Identities = 79/412 (19%), Positives = 139/412 (33%), Gaps = 39/412 (9%)
Query: 21 IDSILPYLNTLTSLTTLNLRYNKIEGSRTKQGICNLKNLLELDLSSNNFEGHLPQCLNNL 80
I+ I L L + + ++ +L + L + + L
Sbjct: 12 INQIFTDTA-LAEKMKTVLGKTNVTDTVSQT---DLDQVTTLQADRLGIKS--IDGVEYL 65
Query: 81 THLKVLDISYNQLSGNFPSVLTNLTSLEYLDLSFIDFQGTFLINSLANHSKLEVLVLSSG 140
+L ++ S NQL+ P L NLT L + ++ + +L N
Sbjct: 66 NNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADITPLANLTNL----------- 112
Query: 141 NDMLQVKTENWLPTYPLKVLQLSHCHLNVNSSFLLHQHHLKFLDLSHNQLVGNFPTWLLQ 200
+ + + L+ L+ N+ + + L
Sbjct: 113 TGLTLFNNQITDIDPLKNLTNLNRLELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLA 172
Query: 201 NNTGLEVLILWNNSFSGILPRLPNAKYDKLRHLDISTNNFSGKLPENLGIVFQKLIYLDV 260
N T LE L + +N S AK L L + N S P + L L +
Sbjct: 173 NLTTLERLDISSNKVS---DISVLAKLTNLESLIATNNQISDITPLGI---LTNLDELSL 226
Query: 261 SKNSFEGNIPYSISEMKELITLDLSRNNFSGELPRSIFSSCLSLETLDLSNNNFYGQLFP 320
+ N + +++ + L LDL+ N S P S L L L N
Sbjct: 227 NGNQLKD--IGTLASLTNLTDLDLANNQISNLAP---LSGLTKLTELKLGANQISN--IS 279
Query: 321 NFMNLTHLSSLRLNNNHFSGKMADGLLSSTLLDVLDVSNNKLSGDIPHWIGNFSVLWLLL 380
LT L++L LN N L + L L + N +S P + + + L L
Sbjct: 280 PLAGLTALTNLELNENQLEDISPISNLKN--LTYLTLYFNNISDISP--VSSLTKLQRLF 335
Query: 381 MSENYLQGSIPVQLGNLESLEFIDISENGLSVSMVSLSNLSSVKHIYLHNNA 432
+ N + L NL ++ ++ N +S + L+NL+ + + L++ A
Sbjct: 336 FANNKVSD--VSSLANLTNINWLSAGHNQIS-DLTPLANLTRITQLGLNDQA 384
|
| >d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin A species: Listeria monocytogenes [TaxId: 1639]
Score = 59.2 bits (142), Expect = 3e-10
Identities = 76/337 (22%), Positives = 134/337 (39%), Gaps = 21/337 (6%)
Query: 157 LKVLQLSHCHLNVNSSFLLHQHHLKFLDLSHNQLVGNFP-------TWLLQNNTGLEVLI 209
+ LQ + + + + ++L ++ S+NQL P +L NN + +
Sbjct: 46 VTTLQADRLGIK-SIDGVEYLNNLTQINFSNNQLTDITPLKNLTKLVDILMNNNQIADIT 104
Query: 210 LWNNSFSGILPRLPNAKYDKLRHLDISTNNFSGKLPENLGIVFQKLIYLDVSKNSFEGNI 269
N + L N + + L TN +L N L L + GN
Sbjct: 105 PLANLTNLTGLTLFNNQITDIDPLKNLTNLNRLELSSNTISDISALSGLTSLQQLSFGNQ 164
Query: 270 PYSISEMKELITLDLSRNNFSGELPRSIFSSCLSLETLDLSNNNFYGQLFPNFMNLTHLS 329
+ + L TL+ + + S+ + +LE+L +NN LT+L
Sbjct: 165 VTDLKPLANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISD--ITPLGILTNLD 222
Query: 330 SLRLNNNHFSGKMADGLLSSTLLDVLDVSNNKLSGDIPHWIGNFSVLWLLLMSENYLQGS 389
L LN N L S T L LD++NN++S P + + L L + N +
Sbjct: 223 ELSLNGNQLKD--IGTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNI 278
Query: 390 IPVQLGNLESLEFIDISENGLSVSMVSLSNLSSVKHIYLHNNAINGLIPIALLRSSTLLT 449
P L L +L ++++EN L SNL ++ ++ L+ N I+ + P++ L L
Sbjct: 279 SP--LAGLTALTNLELNENQLEDISPI-SNLKNLTYLTLYFNNISDISPVSSLTK--LQR 333
Query: 450 LDLRDNKFFGRIPHQINELSNLHFLLLRGNSLQGRIP 486
L +NK + L+N+++L N + P
Sbjct: 334 LFFANNKVSD--VSSLANLTNINWLSAGHNQISDLTP 368
|
| >d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Polygalacturonase inhibiting protein PGIP domain: Polygalacturonase inhibiting protein PGIP species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]
Score = 64.8 bits (156), Expect = 4e-12
Identities = 46/284 (16%), Positives = 84/284 (29%), Gaps = 28/284 (9%)
Query: 55 NLKNLLELDLSSNNFEGHLPQCLNNLTHLKVLDISYNQLSGNFPSVLTNLTSLEYLDLSF 114
+ LDLS N P PS L NL L +L +
Sbjct: 48 QTYRVNNLDLSGLNLPKPYP----------------------IPSSLANLPYLNFLYIGG 85
Query: 115 IDFQGTFLINSLANHSKLEVLVLSSGNDMLQVKTENWLPTYPLKVLQLSHCHLNVNSSFL 174
I+ + ++A ++L L ++ N + + + + +
Sbjct: 86 INNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSI 145
Query: 175 LHQHHLKFLDLSHNQLVGNFPTWLLQNNTGLEVLILWNNSFSGILPRLPNAKYDKLRHLD 234
+L + N++ G P + + + N L + L
Sbjct: 146 SSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNR----LTGKIPPTFANLNLAF 201
Query: 235 ISTNNFSGKLPENLGIVFQKLIYLDVSKNSFEGNIPYSISEMKELITLDLSRNNFSGELP 294
+ + + ++ K + + K L LDL N G LP
Sbjct: 202 VDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLP 261
Query: 295 RSIFSSCLSLETLDLSNNNFYGQLFPNFMNLTHLSSLRLNNNHF 338
+ + L +L++S NN G++ P NL NN
Sbjct: 262 QG-LTQLKFLHSLNVSFNNLCGEI-PQGGNLQRFDVSAYANNKC 303
|
| >d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Polygalacturonase inhibiting protein PGIP domain: Polygalacturonase inhibiting protein PGIP species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]
Score = 64.8 bits (156), Expect = 5e-12
Identities = 59/255 (23%), Positives = 91/255 (35%), Gaps = 4/255 (1%)
Query: 178 HHLKFLDLSHNQLVGNFPTWL-LQNNTGLEVLILWNNSFSGILPRLPNAKYDKLRHLDIS 236
+ + LDLS L +P L N L L + + AK +L +L I+
Sbjct: 50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYIT 109
Query: 237 TNNFSGKLPENLGIVFQKLIYLDVSKNSFEGNIPYSISEMKELITLDLSRNNFSGELPRS 296
N SG + + L+ LD S N+ G +P SIS + L+ + N SG +P S
Sbjct: 110 HTNVSGA-IPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDS 168
Query: 297 IFSSCLSLETLDLSNNNFYGQLFPNFMNLTHLSSLRLNNNHFSGKMADGLLSSTLLDVLD 356
S ++ +S N G++ P F NL N
Sbjct: 169 YGSFSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSRNMLEGDASVLFGSDKN--TQKI 226
Query: 357 VSNNKLSGDIPHWIGNFSVLWLLLMSENYLQGSIPVQLGNLESLEFIDISENGLSVSMVS 416
+G L L + N + G++P L L+ L +++S N L +
Sbjct: 227 HLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQ 286
Query: 417 LSNLSSVKHIYLHNN 431
NL NN
Sbjct: 287 GGNLQRFDVSAYANN 301
|
| >d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Polygalacturonase inhibiting protein PGIP domain: Polygalacturonase inhibiting protein PGIP species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]
Score = 62.8 bits (151), Expect = 2e-11
Identities = 54/236 (22%), Positives = 90/236 (38%), Gaps = 2/236 (0%)
Query: 254 KLIYLDVSKNSFEGN--IPYSISEMKELITLDLSRNNFSGELPRSIFSSCLSLETLDLSN 311
++ LD+S + IP S++ + L L + N + L L +++
Sbjct: 51 RVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITH 110
Query: 312 NNFYGQLFPNFMNLTHLSSLRLNNNHFSGKMADGLLSSTLLDVLDVSNNKLSGDIPHWIG 371
N G + + L +L + N SG + + S L + N++SG IP G
Sbjct: 111 TNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYG 170
Query: 372 NFSVLWLLLMSENYLQGSIPVQLGNLESLEFIDISENGLSVSMVSLSNLSSVKHIYLHNN 431
+FS L+ + +L F+D+S N L L
Sbjct: 171 SFSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAK 230
Query: 432 AINGLIPIALLRSSTLLTLDLRDNKFFGRIPHQINELSNLHFLLLRGNSLQGRIPN 487
+ S L LDLR+N+ +G +P + +L LH L + N+L G IP
Sbjct: 231 NSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQ 286
|
| >d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Polygalacturonase inhibiting protein PGIP domain: Polygalacturonase inhibiting protein PGIP species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]
Score = 60.9 bits (146), Expect = 7e-11
Identities = 62/268 (23%), Positives = 95/268 (35%), Gaps = 8/268 (2%)
Query: 102 TNLTSLEYLDLSFIDFQGTFLI-NSLANHSKLEVLVLSSGNDMLQVKTENWLPTYPLKVL 160
T + LDLS ++ + I +SLAN L L + N+++ L L
Sbjct: 47 TQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYL 106
Query: 161 QLSHCHLNVNSSFLLHQHH-LKFLDLSHNQLVGNFPTWLLQNNTGLEVLILWNNSFSGIL 219
++H +++ L Q L LD S+N L G P + + L + N SG +
Sbjct: 107 YITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSI-SSLPNLVGITFDGNRISGAI 165
Query: 220 PRLPNAKYDKLRHLDISTNNFSGKLPENLGIVFQKLIYLDVSKNSFEGNIPYSISEMKEL 279
P + L S +L + F L V + S+ +
Sbjct: 166 PDSYGSFS----KLFTSMTISRNRLTGKIPPTFANLNLAFVDLSRNMLEGDASVLFGSDK 221
Query: 280 ITLDLSRNNFSGELPRSIFSSCLSLETLDLSNNNFYGQLFPNFMNLTHLSSLRLNNNHFS 339
T + S +L LDL NN YG L L L SL ++ N+
Sbjct: 222 NTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLC 281
Query: 340 GKMADGLLSSTLLDVLDVSNNKLSGDIP 367
G++ G DV +NNK P
Sbjct: 282 GEIPQGGNLQR-FDVSAYANNKCLCGSP 308
|
| >d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Polygalacturonase inhibiting protein PGIP domain: Polygalacturonase inhibiting protein PGIP species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]
Score = 53.6 bits (127), Expect = 2e-08
Identities = 22/60 (36%), Positives = 28/60 (46%), Gaps = 1/60 (1%)
Query: 54 CNLKNLLELDLSSNNFEGHLPQCLNNLTHLKVLDISYNQLSGNFPSVLTNLTSLEYLDLS 113
KNL LDL +N G LPQ L L L L++S+N L G P NL + +
Sbjct: 241 GLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQ-GGNLQRFDVSAYA 299
|
| >d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Polygalacturonase inhibiting protein PGIP domain: Polygalacturonase inhibiting protein PGIP species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]
Score = 45.5 bits (106), Expect = 7e-06
Identities = 24/67 (35%), Positives = 34/67 (50%), Gaps = 2/67 (2%)
Query: 32 TSLTTLNLRYNKIEGSRTKQGICNLKNLLELDLSSNNFEGHLPQCLNNLTHLKVLDISYN 91
+L L+LR N+I G+ QG+ LK L L++S NN G +PQ NL V + N
Sbjct: 244 KNLNGLDLRNNRIYGT-LPQGLTQLKFLHSLNVSFNNLCGEIPQ-GGNLQRFDVSAYANN 301
Query: 92 QLSGNFP 98
+ P
Sbjct: 302 KCLCGSP 308
|
| >d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Polygalacturonase inhibiting protein PGIP domain: Polygalacturonase inhibiting protein PGIP species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]
Score = 42.8 bits (99), Expect = 5e-05
Identities = 19/73 (26%), Positives = 30/73 (41%), Gaps = 3/73 (4%)
Query: 72 HLPQCLNNLTHLKVLDISYNQLSGNFPSVLTNLTSLEYLDLSFIDFQGTFLINSLANHSK 131
+ +L LD+ N++ G P LT L L L++SF + G I N +
Sbjct: 235 FDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGE--IPQGGNLQR 292
Query: 132 LEVLVLSSGNDML 144
+V + N L
Sbjct: 293 FDVSAY-ANNKCL 304
|
| >d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Polygalacturonase inhibiting protein PGIP domain: Polygalacturonase inhibiting protein PGIP species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]
Score = 38.6 bits (88), Expect = 0.001
Identities = 15/65 (23%), Positives = 26/65 (40%), Gaps = 4/65 (6%)
Query: 14 NLGFNFFIDSILPYLNTLTSLTTLNLRYNKIEGSRTKQGICNLKNLLELDLSSNNF--EG 71
+L N ++ L L L +LN+ +N + G + NL+ ++N
Sbjct: 250 DLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQ--GGNLQRFDVSAYANNKCLCGS 307
Query: 72 HLPQC 76
LP C
Sbjct: 308 PLPAC 312
|
| >d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Decorin species: Cow (Bos taurus) [TaxId: 9913]
Score = 63.5 bits (153), Expect = 1e-11
Identities = 48/284 (16%), Positives = 95/284 (33%), Gaps = 16/284 (5%)
Query: 57 KNLLELDLSSNNFEGHLPQCLNNLTHLKVLDISYNQLSGNFPSVLTNLTSLEYLDLSFID 116
+ LDL +N NL +L L + N++S P L LE L LS
Sbjct: 31 PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLS--K 88
Query: 117 FQGTFLINSLANHSKLEVLVLSSGNDMLQVKTENWLPTYPLKVLQLSHCHLNVNSSFLLH 176
Q L + + + + + + +++ + +
Sbjct: 89 NQLKELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQG 148
Query: 177 QHHLKFLDLSHNQLVGNFPTWLLQNNTGLEVLILWNNSFSGILPRLPNAKYDKLRHLDIS 236
L ++ ++ + P L + L L L N + + + L L +S
Sbjct: 149 MKKLSYIRIADTNI-TTIPQGLPPS---LTELHLDGNKITKVDAASLK-GLNNLAKLGLS 203
Query: 237 TNNFSGKLPENLGIVFQKLIYLDVSKNSFEGNIPYSISEMKELITLDLSRNNFSG----- 291
N+ S L L ++ N +P +++ K + + L NN S
Sbjct: 204 FNSISAV-DNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNISAIGSND 261
Query: 292 ELPRSIFSSCLSLETLDLSNNNF-YGQLFPN-FMNLTHLSSLRL 333
P + S + L +N Y ++ P+ F + ++++L
Sbjct: 262 FCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQL 305
|
| >d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Decorin species: Cow (Bos taurus) [TaxId: 9913]
Score = 62.7 bits (151), Expect = 2e-11
Identities = 54/262 (20%), Positives = 97/262 (37%), Gaps = 17/262 (6%)
Query: 203 TGLEVLILWNNSFSGILPRLPNAKYDKLRHLDISTNNFSGKLPENLGIVFQKLIYLDVSK 262
+L L NN + I L L + N S P KL L +SK
Sbjct: 31 PDTALLDLQNNKITEIKDGDF-KNLKNLHTLILINNKISKISPGAFA-PLVKLERLYLSK 88
Query: 263 NSFEGNIPYSISEMKELITLDLSRNNFSGELPRSIFSSCLSLETLDLSNNNFY--GQLFP 320
N + ++EL N ++ +S+F+ + ++L N G
Sbjct: 89 NQLKELPEKMPKTLQELRVH----ENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENG 144
Query: 321 NFMNLTHLSSLRLNNNHFSGKMADGLLSSTLLDVLDVSNNKLSGDIPHWIGNFSVLWLLL 380
F + LS +R+ + + + + GL S L L + NK++ + + L L
Sbjct: 145 AFQGMKKLSYIRIADTNIT-TIPQGLPPS--LTELHLDGNKITKVDAASLKGLNNLAKLG 201
Query: 381 MSENYLQGSIPVQLGNLESLEFIDISENGLSVSMVSLSNLSSVKHIYLHNNAINGL---- 436
+S N + L N L + ++ N L L++ ++ +YLHNN I+ +
Sbjct: 202 LSFNSISAVDNGSLANTPHLRELHLNNNKLVKVPGGLADHKYIQVVYLHNNNISAIGSND 261
Query: 437 --IPIALLRSSTLLTLDLRDNK 456
P + ++ + L N
Sbjct: 262 FCPPGYNTKKASYSGVSLFSNP 283
|
| >d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Decorin species: Cow (Bos taurus) [TaxId: 9913]
Score = 58.1 bits (139), Expect = 5e-10
Identities = 39/207 (18%), Positives = 68/207 (32%), Gaps = 7/207 (3%)
Query: 281 TLDLSRNNFSGELPRSIFSSCLSLETLDLSNNNFYGQLFPNFMNLTHLSSLRLNNNHFSG 340
+ S ++P+ + LDL NN +F NL +L +L L NN S
Sbjct: 14 VVQCSDLGLE-KVPKDLPPD---TALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISK 69
Query: 341 KMADGLLSSTLLDVLDVSNNKLSGDIPHWIGNFSVLWLLLMSENYLQGSIPVQLGNLESL 400
L+ L +S N+L L + ++ S+ L + +
Sbjct: 70 ISPGAFAPLVKLERLYLSKNQLKELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVV 129
Query: 401 EFIDISENGLSVSMVSLSNLSSVKHIYLHNNAINGLIPIALLRSSTLLTLDLRDNKFFGR 460
E + + + + +I + + I + +L L L NK
Sbjct: 130 ELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQGLP---PSLTELHLDGNKITKV 186
Query: 461 IPHQINELSNLHFLLLRGNSLQGRIPN 487
+ L+NL L L NS+
Sbjct: 187 DAASLKGLNNLAKLGLSFNSISAVDNG 213
|
| >d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Decorin species: Cow (Bos taurus) [TaxId: 9913]
Score = 48.9 bits (115), Expect = 6e-07
Identities = 36/238 (15%), Positives = 65/238 (27%), Gaps = 27/238 (11%)
Query: 2 DSFGSLKQLKILNLGFNFFIDSILPYLNTLTSLTTLNLRYNKIEG--------------- 46
F +LK L L L N L L L L N+++
Sbjct: 49 GDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKELPEKMPKTLQELRVH 108
Query: 47 -------SRTKQGICNLKNLLELDLSSNNFEGHLPQCLNNLTHLKVLDISYNQLSGNFPS 99
++ N ++EL + G + L + I+ ++
Sbjct: 109 ENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQG 168
Query: 100 VLTNLTSLEYLDLSFIDFQGTFLINSLANHSKLEVLVLSSGNDMLQVKTENWLPTYPLKV 159
+ +LT L L SL + L L LS + + L+
Sbjct: 169 LPPSLT---ELHLDGNKITK-VDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPH-LRE 223
Query: 160 LQLSHCHLNVNSSFLLHQHHLKFLDLSHNQLVGNFPTWLLQNNTGLEVLILWNNSFSG 217
L L++ L L +++ + L +N + + S
Sbjct: 224 LHLNNNKLVKVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFS 281
|
| >d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Decorin species: Cow (Bos taurus) [TaxId: 9913]
Score = 45.4 bits (106), Expect = 7e-06
Identities = 49/307 (15%), Positives = 89/307 (28%), Gaps = 41/307 (13%)
Query: 10 LKILNLGFNFFIDSILPYLNTLTSLTTLNLRYNKIEGSRTKQGICNLKNLLELDLSSNNF 69
+L+L N + L +L TL L NKI + L L L LS N
Sbjct: 33 TALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKI-SPGAFAPLVKLERLYLSKNQL 91
Query: 70 EGHLPQCLNNLTHLKVLDISYNQLSGNFPSVLTNLTSLEYLDLSFIDFQGTFLINSLANH 129
+ + L L + N+++ SV L + ++L + + + N
Sbjct: 92 KELPEKMPKTLQE---LRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQG 148
Query: 130 SKLEVLVLSSGNDMLQVKTENWLPTYPLKVLQLSHCHLNVNSSFLLHQHHLKFLDLSHNQ 189
K L ++++ ++ L L L L N+
Sbjct: 149 MK------------------------KLSYIRIADTNITTIPQGLPPS--LTELHLDGNK 182
Query: 190 LVGNFPTWLLQNNTGLEVLILWNNSFSGILPRLPNAKYDKLRHLDISTNNFSGKLPENLG 249
+ L GL L SF+ I + + ++ NN
Sbjct: 183 ITKVDAASL----KGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVKVPGGL 238
Query: 250 IVFQKLIYLDVSKNSFEG------NIPYSISEMKELITLDLSRNNFS-GELPRSIFSSCL 302
+ + + + N+ P ++ + L N E+ S F
Sbjct: 239 ADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVY 298
Query: 303 SLETLDL 309
+ L
Sbjct: 299 VRAAVQL 305
|
| >d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: 28-residue LRR domain: Ribonuclease inhibitor species: Human (Homo sapiens) [TaxId: 9606]
Score = 61.9 bits (148), Expect = 7e-11
Identities = 55/455 (12%), Positives = 110/455 (24%), Gaps = 27/455 (5%)
Query: 33 SLTTLNLRYNKIEGSRTKQGICNLKNLLELDLSSNNFEG----HLPQCLNNLTHLKVLDI 88
+ +L+++ ++ +R + + L+ + L + L L L++
Sbjct: 3 DIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNL 62
Query: 89 SYNQLSGNFPSVL-----TNLTSLEYLDLSFIDFQGTFLINSLANHSKLEVLVLSSGNDM 143
N+L + T ++ L L G + L L +D
Sbjct: 63 RSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDN 122
Query: 144 LQVKTENWLPTYPLKVLQLSHCHLNVNSSFLLHQHHLKFLDLSHNQLVGNFPTWLLQNNT 203
L L L + + L L +
Sbjct: 123 LLGDAGLQLLCE----GLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSN 178
Query: 204 GLEVLILWNNSFSGILPRLPNAKYDKLRHLDISTNNFSGKLPENLGIVFQKLIYLDVSKN 263
G+ + KL ++++N + + L +K
Sbjct: 179 NDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKL 238
Query: 264 SFEGNIPYSISEMKELITLDLSRNNFSGELPRSIFSSCLSLETLDLSNNNFYGQLFPNFM 323
G + L G + C L +
Sbjct: 239 GDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDE 298
Query: 324 NLTHLSSLRLNNNHFSGKMADGLLSSTLLDVLDVSNNKLSGDIPHWIGNFSVLWLLLMSE 383
L L + S T S+ + +
Sbjct: 299 GARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVR 358
Query: 384 NYLQGSIPVQLGNLESLEFIDISENGLSVSMVS-----LSNLSSVKHIYLHNNAINGLIP 438
QG L + +++ +S S S L S++ + L NN +
Sbjct: 359 ELCQG----LGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGI 414
Query: 439 IALLRS-----STLLTLDLRDNKFFGRIPHQINEL 468
+ L+ S L L L D + + ++ L
Sbjct: 415 LQLVESVRQPGCLLEQLVLYDIYWSEEMEDRLQAL 449
|
| >d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: 28-residue LRR domain: Ribonuclease inhibitor species: Human (Homo sapiens) [TaxId: 9606]
Score = 55.0 bits (130), Expect = 9e-09
Identities = 53/448 (11%), Positives = 113/448 (25%), Gaps = 24/448 (5%)
Query: 58 NLLELDLSSNNF-EGHLPQCLNNLTHLKVLDISYNQLSG----NFPSVLTNLTSLEYLDL 112
++ LD+ + + L L +V+ + L+ + S L +L L+L
Sbjct: 3 DIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNL 62
Query: 113 SFIDFQGT---FLINSLA-NHSKLEVLVLSSGNDMLQVKTENWLPTYPLKVLQLSHCHLN 168
+ ++ L K++ L L + L LQ H N
Sbjct: 63 RSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDN 122
Query: 169 VNSSFLLHQHHLKFLDLSHNQLVGNFPTWLLQNNTGLEVLILWNNSFSGILPRLPNAKYD 228
+ L LD L + + +
Sbjct: 123 LLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPD------FKELTV 176
Query: 229 KLRHLDISTNNFSGKLPENLGIVFQKLIYLDVSKNSFEGNIPYSISEMKELITLDLSRNN 288
++ + + ++ + L S I K + +N
Sbjct: 177 SNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSN 236
Query: 289 FSGELPRSIFSSCLSLETLDLSNNNFYGQLFPNFMNLTHLSSLRLNNNHFSGKMADGLLS 348
G++ + L + L + LR + +A L
Sbjct: 237 KLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELG 296
Query: 349 STLLDVLDVSNNKLSGDIPHWIGNFSVLWLLLMSENYLQGSIPVQLGNLESLEFIDISEN 408
+L + + + S + L L+
Sbjct: 297 DEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAG 356
Query: 409 GLSVSMVSLSNLSSVKHIYLHNNAINGL----IPIALLRSSTLLTLDLRDNKFFGRIPHQ 464
+ S ++ ++L + ++ + LL + +L LDL +N Q
Sbjct: 357 VRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQ 416
Query: 465 I-----NELSNLHFLLLRGNSLQGRIPN 487
+ L L+L + +
Sbjct: 417 LVESVRQPGCLLEQLVLYDIYWSEEMED 444
|
| >d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: 28-residue LRR domain: Ribonuclease inhibitor species: Human (Homo sapiens) [TaxId: 9606]
Score = 45.7 bits (106), Expect = 8e-06
Identities = 50/446 (11%), Positives = 108/446 (24%), Gaps = 17/446 (3%)
Query: 10 LKILNLGFNFFIDSILPYL-NTLTSLTTLNLRYNKIEGSRTK---QGICNLKNLLELDLS 65
++ L++ D+ L L + L + +R K + L EL+L
Sbjct: 4 IQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLR 63
Query: 66 SNNFEGHLPQCLNNLTHLKVLDISYNQLSGNFPSVLTNLTSLEYLDLSFIDFQGTFLINS 125
SN C+ I L + L + N
Sbjct: 64 SNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNL 123
Query: 126 LANHSKLEVLVLSSGNDMLQVKTENWLPTYPLKVLQLSHCHLNVNSSFLLHQHHLKFLDL 185
L + + K + + + L F ++
Sbjct: 124 LGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDINE 183
Query: 186 SHNQLVGNFPTWLLQNNTGLEVLILWNNSFSGILPRLPNAKYDKLRHLDISTNNFSGKLP 245
+ +++ L++ S + A LR L + +N
Sbjct: 184 AGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGM 243
Query: 246 ENLGIVFQKLIYLDVSKNSFEGNIPYSISEMKELITLDLSRNNFSGELPRSIFSSCLSLE 305
L + +E I + + L
Sbjct: 244 AELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLL 303
Query: 306 TLDLSNNNFYGQLFPNFMNLTHLSSLRLNNNHFSGKMADGLLSSTLLDVLDVSNNKLSGD 365
L + + ++ + L + + D +
Sbjct: 304 CETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRE---L 360
Query: 366 IPHWIGNFSVLWLLLMSENYLQG----SIPVQLGNLESLEFIDISENGLSVSMVSL---- 417
SVL +L +++ + S+ L SL +D+S N L + +
Sbjct: 361 CQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVES 420
Query: 418 --SNLSSVKHIYLHNNAINGLIPIAL 441
++ + L++ + + L
Sbjct: 421 VRQPGCLLEQLVLYDIYWSEEMEDRL 446
|
| >d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: 28-residue LRR domain: Ribonuclease inhibitor species: Human (Homo sapiens) [TaxId: 9606]
Score = 45.0 bits (104), Expect = 2e-05
Identities = 17/86 (19%), Positives = 24/86 (27%), Gaps = 8/86 (9%)
Query: 27 YLNTLTSLTTLNLRYNKIEGSRTK---QGICNLKNLLELDLSSNNFEGHLPQCL-----N 78
+ L L L + S + +L ELDLS+N L
Sbjct: 364 LGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQ 423
Query: 79 NLTHLKVLDISYNQLSGNFPSVLTNL 104
L+ L + S L L
Sbjct: 424 PGCLLEQLVLYDIYWSEEMEDRLQAL 449
|
| >d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: 28-residue LRR domain: Ribonuclease inhibitor species: Human (Homo sapiens) [TaxId: 9606]
Score = 43.8 bits (101), Expect = 4e-05
Identities = 24/97 (24%), Positives = 42/97 (43%), Gaps = 9/97 (9%)
Query: 150 NWLPTYPLKVLQLSHCHLNVN-----SSFLLHQHHLKFLDLSHNQL----VGNFPTWLLQ 200
P L+VL L+ C ++ + ++ LL H L+ LDLS+N L + + Q
Sbjct: 364 LGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQ 423
Query: 201 NNTGLEVLILWNNSFSGILPRLPNAKYDKLRHLDIST 237
LE L+L++ +S + A L + +
Sbjct: 424 PGCLLEQLVLYDIYWSEEMEDRLQALEKDKPSLRVIS 460
|
| >d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: 28-residue LRR domain: Ribonuclease inhibitor species: Human (Homo sapiens) [TaxId: 9606]
Score = 42.3 bits (97), Expect = 1e-04
Identities = 12/76 (15%), Positives = 30/76 (39%), Gaps = 5/76 (6%)
Query: 302 LSLETLDLSNNNFYGQLFPNFM-NLTHLSSLRLNNNHFSGK----MADGLLSSTLLDVLD 356
L +++LD+ + + L +RL++ + ++ L + L L+
Sbjct: 2 LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELN 61
Query: 357 VSNNKLSGDIPHWIGN 372
+ +N+L H +
Sbjct: 62 LRSNELGDVGVHCVLQ 77
|
| >d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: 28-residue LRR domain: Ribonuclease inhibitor species: Human (Homo sapiens) [TaxId: 9606]
Score = 40.3 bits (92), Expect = 4e-04
Identities = 20/93 (21%), Positives = 27/93 (29%), Gaps = 12/93 (12%)
Query: 55 NLKNLLELDLSSNNFEG----HLPQCLNNLTHLKVLDISYNQLSGNFPSVL-----TNLT 105
L L L+ + L L L+ LD+S N L L
Sbjct: 367 PGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGC 426
Query: 106 SLEYLDLSFIDFQGTF---LINSLANHSKLEVL 135
LE L L I + L + L V+
Sbjct: 427 LLEQLVLYDIYWSEEMEDRLQALEKDKPSLRVI 459
|
| >d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: 28-residue LRR domain: Ribonuclease inhibitor species: Human (Homo sapiens) [TaxId: 9606]
Score = 38.4 bits (87), Expect = 0.002
Identities = 16/94 (17%), Positives = 29/94 (30%), Gaps = 14/94 (14%)
Query: 252 FQKLIYLDVSKNSFEGN----IPYSISEMKELITLDLSRNNFSGE----LPRSIFSSCLS 303
L L ++ + + ++ L LDLS N L S+
Sbjct: 368 GSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGCL 427
Query: 304 LETLDLSNNNFYGQLFPNFMNLTHLSSLRLNNNH 337
LE L L + + ++ L +L +
Sbjct: 428 LEQLVLYDIYWSEEM------EDRLQALEKDKPS 455
|
| >d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: 28-residue LRR domain: Ribonuclease inhibitor species: Human (Homo sapiens) [TaxId: 9606]
Score = 38.0 bits (86), Expect = 0.002
Identities = 18/102 (17%), Positives = 31/102 (30%), Gaps = 7/102 (6%)
Query: 166 HLNVNSSFLLHQHHLKFLDLSHNQLVGNFPTWL---LQNNTGLEVLILWNNSFSGI---- 218
+ L+ L L+ + + + L L N L L L NN
Sbjct: 357 VRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQ 416
Query: 219 LPRLPNAKYDKLRHLDISTNNFSGKLPENLGIVFQKLIYLDV 260
L L L + +S ++ + L + + L V
Sbjct: 417 LVESVRQPGCLLEQLVLYDIYWSEEMEDRLQALEKDKPSLRV 458
|
| >d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: von Willebrand factor binding domain of glycoprotein Ib alpha species: Human (Homo sapiens) [TaxId: 9606]
Score = 58.2 bits (139), Expect = 4e-10
Identities = 44/212 (20%), Positives = 70/212 (33%), Gaps = 9/212 (4%)
Query: 272 SISEMKELITLDLSRNNFSGELPRSIFSSCLSLETLDLSNNNFYGQLFPNFMNLTHLSSL 331
+S++ + ++ + N + LP + L LS N Y M T L+ L
Sbjct: 5 EVSKVASHLEVNCDKRNLT-ALPPDLPKD---TTILHLSENLLYTFSLATLMPYTRLTQL 60
Query: 332 RLNNNHFSGKMADGLLSSTLLDVLDVSNNKLSGDIPHWIGNFSVLWLLLMSENYLQGSIP 391
L+ + DG L L + + + + +VL +S N L
Sbjct: 61 NLDRAELTKLQVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLD---VSFNRLTSLPL 117
Query: 392 VQLGNLESLEFIDISENGLSVSMVSLSNLSSVKHIYLHN-NAINGLIPIALLRSSTLLTL 450
L L L+ + + N L L + N + L L L TL
Sbjct: 118 GALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTL 177
Query: 451 DLRDNKFFGRIPHQINELSNLHFLLLRGNSLQ 482
L++N + IP L F L GN
Sbjct: 178 LLQENSLY-TIPKGFFGSHLLPFAFLHGNPWL 208
|
| >d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: von Willebrand factor binding domain of glycoprotein Ib alpha species: Human (Homo sapiens) [TaxId: 9606]
Score = 55.5 bits (132), Expect = 3e-09
Identities = 38/202 (18%), Positives = 67/202 (33%), Gaps = 8/202 (3%)
Query: 230 LRHLDISTNNFSGKLPENLGIVFQKLIYLDVSKNSFEGNIPYSISEMKELITLDLSRNNF 289
++ N + LP +L + L +S+N ++ L L+L R
Sbjct: 12 HLEVNCDKRNLT-ALPPDLP---KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAEL 67
Query: 290 SGELPRSIFSSCLSLETLDLSNNNFYGQLFPNFMNLTHLSSLRLNNNHFSGKMADGLLSS 349
+ L + ++N L L L+ L ++ N + L
Sbjct: 68 ----TKLQVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGL 123
Query: 350 TLLDVLDVSNNKLSGDIPHWIGNFSVLWLLLMSENYLQGSIPVQLGNLESLEFIDISENG 409
L L + N+L P + L L ++ N L L LE+L+ + + EN
Sbjct: 124 GELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENS 183
Query: 410 LSVSMVSLSNLSSVKHIYLHNN 431
L + +LH N
Sbjct: 184 LYTIPKGFFGSHLLPFAFLHGN 205
|
| >d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: von Willebrand factor binding domain of glycoprotein Ib alpha species: Human (Homo sapiens) [TaxId: 9606]
Score = 53.2 bits (126), Expect = 2e-08
Identities = 36/208 (17%), Positives = 65/208 (31%), Gaps = 26/208 (12%)
Query: 53 ICNLKNLLELDLSSNNFEGHLPQCLNNLTHLKVLDISYNQLSGNFPSVLTNLTSLEYLDL 112
+ + + LE++ N LP L +L +S N L + L T L L+L
Sbjct: 6 VSKVASHLEVNCDKRNLT-ALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNL 62
Query: 113 SFIDFQGTFLINSLANHSKLEVLVLSSGNDMLQVKTENWLPTYPLKVLQLS--------- 163
+ + +L L++ + L +T L + +L+
Sbjct: 63 DRAELTKLQVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRG 122
Query: 164 -----------HCHLNVNSSFLLHQHHLKFLDLSHNQLVGNFPTWLLQNNTGLEVLILWN 212
+ + L L+ L L++N L L L+ L+L
Sbjct: 123 LGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGL-LNGLENLDTLLLQE 181
Query: 213 NSFSGILPRLPNAKYDKLRHLDISTNNF 240
NS I + L + N +
Sbjct: 182 NSLYTIPKGFFGSH--LLPFAFLHGNPW 207
|
| >d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: von Willebrand factor binding domain of glycoprotein Ib alpha species: Human (Homo sapiens) [TaxId: 9606]
Score = 48.2 bits (113), Expect = 8e-07
Identities = 34/183 (18%), Positives = 59/183 (32%), Gaps = 9/183 (4%)
Query: 157 LKVLQLSHCHL-NVNSSFLLHQHHLKFLDLSHNQLVGNFPTWLLQNNTGLEVLILWNNSF 215
+L LS L + + L+ L L+L +L L L + S
Sbjct: 33 TTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVDGTLPV------LGTLDLSH 86
Query: 216 SGILPRLPNAKYDKLRHLDISTNNFSGKLPENLGIVFQKLIYLDVSKNSFEGNIPYSISE 275
+ + + + + N LP +L L + N +P +
Sbjct: 87 NQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGN-ELKTLPPGLLT 145
Query: 276 MKELITLDLSRNNFSGELPRSIFSSCLSLETLDLSNNNFYGQLFPNFMNLTHLSSLRLNN 335
+ NN ELP + + +L+TL L N+ Y + F L L+
Sbjct: 146 PTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHG 204
Query: 336 NHF 338
N +
Sbjct: 205 NPW 207
|
| >d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: von Willebrand factor binding domain of glycoprotein Ib alpha species: Human (Homo sapiens) [TaxId: 9606]
Score = 37.0 bits (84), Expect = 0.003
Identities = 40/201 (19%), Positives = 56/201 (27%), Gaps = 11/201 (5%)
Query: 8 KQLKILNLGFNFFIDSILPYLNTLTSLTTLNLRYNKIEGSRTKQGICNLKNLLELDLSSN 67
K IL+L N L L T LT LNL ++ Q L L LDLS N
Sbjct: 31 KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAEL---TKLQVDGTLPVLGTLDLSHN 87
Query: 68 NFEGHLPQCLNNLTHLKVLDISYNQLSGNFPSVLTNLTSLEYLDLSFIDFQGTFLINSLA 127
+ + S ++ E + L L
Sbjct: 88 QLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQEL---YLKGNELKTLPPGLL 144
Query: 128 NHSKLEVLVLSSGNDMLQVKTENWLPTYPLKVLQLSHCHLNVNSSFLLHQHHLKFLDLSH 187
+ + + N++ ++ L L L L H L F L
Sbjct: 145 TPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYTIPKGFFGSHLLPFAFLHG 204
Query: 188 NQLVGN-----FPTWLLQNNT 203
N + N F WL N
Sbjct: 205 NPWLCNCEILYFRRWLQDNAE 225
|
| >d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr) species: Human (Homo sapiens) [TaxId: 9606]
Score = 58.3 bits (139), Expect = 4e-10
Identities = 46/288 (15%), Positives = 87/288 (30%), Gaps = 13/288 (4%)
Query: 54 CNLKNLLELDLSSNNFEGHLPQCLNNLTHLKVLDISYNQLSGNFPSVLTNLTSLEYLDLS 113
C + + + +P + + + + N++S + +L L L
Sbjct: 8 CYNEPKVTTSCPQQGLQ-AVPVGIP--AASQRIFLHGNRISHVPAASFRACRNLTILWLH 64
Query: 114 FIDFQGTFLINSLANHSKLEVLVLSSGNDMLQVKTENWLPTYPLKVLQLSHC-HLNVNSS 172
+ + LE L LS + V + L L L C +
Sbjct: 65 SNVLA-RIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPG 123
Query: 173 FLLHQHHLKFLDLSHNQLVGNFPTWLLQNNTGLEVLILWNNSFSGILPRLPNAKYDKLRH 232
L++L L N L ++ L L L N S + R L
Sbjct: 124 LFRGLAALQYLYLQDNALQALPDDT-FRDLGNLTHLFLHGNRISSVPERAFR-GLHSLDR 181
Query: 233 LDISTNNFSGKLPENLGIVFQKLIYLDVSKNSFEGNIPYSISEMKELITLDLSRNNFSGE 292
L + N + P + + + L + N+ +++ ++ L L L+ N + +
Sbjct: 182 LLLHQNRVAHVHPHAFRDLGRL-MTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCD 240
Query: 293 LPRSIFSSCLSLETLDLSNNNFYGQLFPNFMNLTHLSSLRLNNNHFSG 340
+ L+ S++ L L RL N G
Sbjct: 241 CRARPLWA--WLQKFRGSSSEVPCSLPQ---RLAGRDLKRLAANDLQG 283
|
| >d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr) species: Human (Homo sapiens) [TaxId: 9606]
Score = 55.2 bits (131), Expect = 5e-09
Identities = 39/233 (16%), Positives = 67/233 (28%), Gaps = 2/233 (0%)
Query: 255 LIYLDVSKNSFEGNIPYSISEMKELITLDLSRNNFSGELPRSIFSSCLSLETLDLSNNNF 314
+ + N S + L L L N + + L + N
Sbjct: 34 SQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQL 93
Query: 315 YGQLFPNFMNLTHLSSLRLNNNHFSGKMADGLLSSTLLDVLDVSNNKLSGDIPHWIGNFS 374
F L L +L L+ L L + +N L +
Sbjct: 94 RSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLG 153
Query: 375 VLWLLLMSENYLQGSIPVQLGNLESLEFIDISENG-LSVSMVSLSNLSSVKHIYLHNNAI 433
L L + N + L SL+ + + +N V + +L + +YL N +
Sbjct: 154 NLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNL 213
Query: 434 NGLIPIALLRSSTLLTLDLRDNKFFGRIPHQINELSNLHFLLLRGNSLQGRIP 486
+ L AL L L L DN + + L + + +P
Sbjct: 214 SALPTEALAPLRALQYLRLNDNPWVC-DCRARPLWAWLQKFRGSSSEVPCSLP 265
|
| >d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr) species: Human (Homo sapiens) [TaxId: 9606]
Score = 51.7 bits (122), Expect = 5e-08
Identities = 34/191 (17%), Positives = 62/191 (32%), Gaps = 7/191 (3%)
Query: 27 YLNTLTSLTTLNLRYNKIEGSRTKQGICNLKNLLELDLSSNNFEGHLPQCLNNLTHLKVL 86
+ L L TL+L ++ L L L N + +L +L L
Sbjct: 100 TFHGLGRLHTLHLDRCGLQELGPGLFRGL-AALQYLYLQDNALQALPDDTFRDLGNLTHL 158
Query: 87 DISYNQLSGNFPSVLTNLTSLEYLDLSFIDFQGTFLINSLANHSKLEVLVLSSGNDMLQV 146
+ N++S L SL+ L L + + + N++ +
Sbjct: 159 FLHGNRISSVPERAFRGLHSLDRLLLHQNRVAH--VHPHAFRDLGRLMTLYLFANNLSAL 216
Query: 147 KTENWLPTYPLKVLQLSHCHLNVNSSFLLHQHHLKFLDLSHNQLVGNFPTWLLQNNTGLE 206
TE P L+ L+L+ + L+ S +++ + P L G +
Sbjct: 217 PTEALAPLRALQYLRLNDNPWVCDCRARPLWAWLQKFRGSSSEVPCSLPQRL----AGRD 272
Query: 207 VLILWNNSFSG 217
+ L N G
Sbjct: 273 LKRLAANDLQG 283
|
| >d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr) species: Human (Homo sapiens) [TaxId: 9606]
Score = 49.0 bits (115), Expect = 4e-07
Identities = 42/242 (17%), Positives = 71/242 (29%), Gaps = 9/242 (3%)
Query: 2 DSFGSLKQLKILNLGFNFFIDSILPYLNTLTSLTTLNLRYNKIEGSRTKQGICNLKNLLE 61
SF + + L IL L N L L L+L N S L L
Sbjct: 50 ASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHT 109
Query: 62 LDLSSNNFEGHLPQCLNNLTHLKVLDISYNQLSGNFPSVLTNLTSLEYLDLSFIDFQGTF 121
L L + P L L+ L + N L +L +L +L L
Sbjct: 110 LHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISS-V 168
Query: 122 LINSLANHSKLEVLVLSSGNDMLQVKTENWLPTYPLKVLQLSHCHLNVNSSFLLHQHHLK 181
+ L+ L+L + + ++ + + L L+
Sbjct: 169 PERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQ 228
Query: 182 FLDLSHNQLVGNFP-TWLLQNNTGLEVLILWNNSFSGILPRLPNAKYDKLRHLDISTNNF 240
+L L+ N V + L L+ ++ LP + ++ N+
Sbjct: 229 YLRLNDNPWVCDCRARPLWAW---LQKFRGSSSEVPCSLP----QRLAGRDLKRLAANDL 281
Query: 241 SG 242
G
Sbjct: 282 QG 283
|
| >d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr) species: Human (Homo sapiens) [TaxId: 9606]
Score = 47.5 bits (111), Expect = 1e-06
Identities = 47/262 (17%), Positives = 80/262 (30%), Gaps = 12/262 (4%)
Query: 32 TSLTTLNLRYNKIEGSRTKQGICNLKNLLELDLSSNNFEGHLPQCLNNLTHLKVLDISYN 91
+ + L N+I +NL L L SN L L+ LD+S N
Sbjct: 32 AASQRIFLHGNRISHVP-AASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDN 90
Query: 92 QLSGN-FPSVLTNLTSLEYLDLSFIDFQGTFLINSLANHSKLEVLVLSSGNDMLQVKTEN 150
+ P+ L L L L L L + N + + +
Sbjct: 91 AQLRSVDPATFHGLGRLHTLHLD--RCGLQELGPGLFRGLAALQYLYLQDNALQALPDDT 148
Query: 151 WLPTYPLKVLQLSHCHLN-VNSSFLLHQHHLKFLDLSHNQLVGNFPTWLLQNNTGLEVLI 209
+ L L L ++ V H L L L N++ P + + +
Sbjct: 149 FRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYL 208
Query: 210 LWNNSFSGILPRLPNAKYDKLRHLDISTNNFSGKLPENLGIVFQKLIYLDVSKNSFEGNI 269
NN LP A L++L ++ N + ++ L S + ++
Sbjct: 209 FANNLS--ALPTEALAPLRALQYLRLNDNPWVCDC--RARPLWAWLQKFRGSSSEVPCSL 264
Query: 270 PYSISEMKELITLDLSRNNFSG 291
P + L+ N+ G
Sbjct: 265 P---QRLAGRDLKRLAANDLQG 283
|
| >d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr) species: Human (Homo sapiens) [TaxId: 9606]
Score = 41.3 bits (95), Expect = 1e-04
Identities = 35/164 (21%), Positives = 61/164 (37%), Gaps = 2/164 (1%)
Query: 326 THLSSLRLNNNHFSGKMADGLLSSTLLDVLDVSNNKLSGDIPHWIGNFSVLWLLLMSENY 385
+ L+ N S A + L +L + +N L+ ++L L +S+N
Sbjct: 32 AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNA 91
Query: 386 LQGSI-PVQLGNLESLEFIDISENGLSVSMVSLSNL-SSVKHIYLHNNAINGLIPIALLR 443
S+ P L L + + GL L ++++++YL +NA+ L
Sbjct: 92 QLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRD 151
Query: 444 SSTLLTLDLRDNKFFGRIPHQINELSNLHFLLLRGNSLQGRIPN 487
L L L N+ L +L LLL N + P+
Sbjct: 152 LGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPH 195
|
| >d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: Cyclin A/CDK2-associated p19, Skp2 domain: Cyclin A/CDK2-associated p19, Skp2 species: Human (Homo sapiens) [TaxId: 9606]
Score = 56.3 bits (134), Expect = 2e-09
Identities = 48/265 (18%), Positives = 89/265 (33%), Gaps = 13/265 (4%)
Query: 2 DSFGSLKQLKILNLGF-NFFIDSILPYLNTLTSLTTLNLRYNKIEGSRTKQGICNLKNLL 60
D G L ++ F+D L + + ++L + IE S + L
Sbjct: 15 DVTGRLLSQGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQ 74
Query: 61 ELDLSSNNFEGHLPQCLNNLTHLKVLDIS--YNQLSGNFPSVLTNLTSLEYLDLSFIDFQ 118
L L + L ++L L++S ++L++ + L+ L+LS+
Sbjct: 75 NLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDF 134
Query: 119 G----TFLINSLANHSKLEVLVLSSGNDMLQVKTENWLPTYPLKVLQLSHCHLNVNSSF- 173
+ ++ L N + L L LS + N F
Sbjct: 135 TEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQ 194
Query: 174 -LLHQHHLKFLDLSHNQLVGNFPTWLLQNNTGLEVLILWNNSFSGILPRLPNAKYDKLRH 232
++L+ L LS + L L+ L ++ G L L A L H
Sbjct: 195 EFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGIVPDGTLQLLKEA----LPH 250
Query: 233 LDISTNNFSGKLPENLGIVFQKLIY 257
L I+ ++F+ +G + I+
Sbjct: 251 LQINCSHFTTIARPTIGNKKNQEIW 275
|
| >d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: Cyclin A/CDK2-associated p19, Skp2 domain: Cyclin A/CDK2-associated p19, Skp2 species: Human (Homo sapiens) [TaxId: 9606]
Score = 51.3 bits (121), Expect = 9e-08
Identities = 42/280 (15%), Positives = 94/280 (33%), Gaps = 15/280 (5%)
Query: 183 LDLSHNQLVGNFPTWLLQNNTGLEVLILWNNSFSGILPRLPNAKYDKLRHLDISTNNFSG 242
LDL+ L + LL G+ + L + +++H+D+S +
Sbjct: 5 LDLTGKNLHPDVTGRLLSQ--GVIAFRCPRSFMDQPLAEHFSPF--RVQHMDLSNSVIEV 60
Query: 243 KLPENLGIVFQKLIYLDVSKNSFEGNIPYSISEMKELITLDLSRN-NFSGELPRSIFSSC 301
+ KL L + I ++++ L+ L+LS FS +++ SSC
Sbjct: 61 STLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSC 120
Query: 302 LSLETLDLSNNNFYGQ-------LFPNFMNLTHLSSLRLNNNHFSGKMADGLLSSTLLDV 354
L+ L+LS + + + S N S L+ +
Sbjct: 121 SRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHL 180
Query: 355 LDVSNNKLSGDIPHWIGNFSVLWLLLMSE-NYLQGSIPVQLGNLESLEFIDISENGLSVS 413
+ L D + L L +S + ++LG + +L+ + + +
Sbjct: 181 DLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGIVPDGT 240
Query: 414 MVSLSNLSSVKHIYLHNNAINGLIPIALLRSSTLLTLDLR 453
+ L ++ H+ ++ + + + ++
Sbjct: 241 LQLL--KEALPHLQINCSHFTTIARPTIGNKKNQEIWGIK 278
|
| >d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: Cyclin A/CDK2-associated p19, Skp2 domain: Cyclin A/CDK2-associated p19, Skp2 species: Human (Homo sapiens) [TaxId: 9606]
Score = 50.9 bits (120), Expect = 1e-07
Identities = 38/252 (15%), Positives = 79/252 (31%), Gaps = 14/252 (5%)
Query: 231 RHLDISTNNFSGKLPENLGIVFQKLIYLDVSKNSFEGNIPYSISEMKELITLDLSRNNFS 290
+ LD++ N + L + Q +I ++ + + S + + +DLS +
Sbjct: 3 QTLDLTGKNLHPDVTGRL--LSQGVIAFRCPRSFMDQPLAEHFSPFR-VQHMDLSNSVIE 59
Query: 291 GELPRSIFSSCLSLETLDLSNNNFYGQLFPNFMNLTHLSSLRLNNNHFSGKMADGLLSST 350
I S C L+ L L + ++L L L+ + A L S+
Sbjct: 60 VSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSS 119
Query: 351 LLDVLDVSNNKLSGDIPHWIGNFSVLWLLLMSENYLQGSIPVQLGNLESLEF-------- 402
+ +++ + + +++ L G + S
Sbjct: 120 CSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVH 179
Query: 403 --IDISENGLSVSMVSLSNLSSVKHIYLHN-NAINGLIPIALLRSSTLLTLDLRDNKFFG 459
+ S + L+ ++H+ L I + L TL TL + G
Sbjct: 180 LDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGIVPDG 239
Query: 460 RIPHQINELSNL 471
+ L +L
Sbjct: 240 TLQLLKEALPHL 251
|
| >d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Leucine rich effector protein YopM domain: Leucine rich effector protein YopM species: Yersinia pestis [TaxId: 632]
Score = 51.7 bits (122), Expect = 9e-08
Identities = 52/331 (15%), Positives = 99/331 (29%), Gaps = 20/331 (6%)
Query: 54 CNLKNLLELDLSSNNFEGHLPQCLNNLTHLKVLDISYNQLSGNFPSVLTNLTSLEYLDLS 113
C + EL+L++ LP+ HL+ L S N L+ P + +L SL + +
Sbjct: 35 CLDRQAHELELNNLGLS-SLPELP---PHLESLVASCNSLT-ELPELPQSLKSLLVDNNN 89
Query: 114 FIDFQGTFLINSLANHSKLEVLVLSSGNDMLQVKTENWLPTYPLKVLQLSHCHLNVNSSF 173
+ S ++ L + +K + K+ L + +
Sbjct: 90 LKALSDLPPLLEYLGVSNNQLEKLPELQNSSFLKIIDVDNNSLKKLPDLPPSLEFIAAGN 149
Query: 174 LLHQHHLKFLDLSHNQLVGNFPTWLLQNNTGLEVLILWNNSFSGILPRLPNAKYDKLRHL 233
+ + +L + L + L + + L +
Sbjct: 150 NQLEELPELQNLPFLTAIYADNNSLKKLPDLPLSLESIVAGNNILEELPELQNLPFLTTI 209
Query: 234 DISTNNFSGKLPENLGIVFQKLI------YLDVSKNSFEGNIPYSISEMKELITLDLSRN 287
N + + ++ ++ ++ +I + +L
Sbjct: 210 YADNNLLKTLPDLPPSLEALNVRDNYLTDLPELPQSLTFLDVSENIFSGLSELPPNLYYL 269
Query: 288 NFSGELPRSIFSSCLSLETLDLSNNNFYGQLFPNFMNLTHLSSLRLNNNHFSGKMADGLL 347
N S RS+ SLE L++SNN P L L + NH + L
Sbjct: 270 NASSNEIRSLCDLPPSLEELNVSNNKL--IELPA--LPPRLERLIASFNHLAE--VPELP 323
Query: 348 SSTLLDVLDVSNNKLSGDIPHWIGNFSVLWL 378
+ L L V N L P + L +
Sbjct: 324 QN--LKQLHVEYNPLRE-FPDIPESVEDLRM 351
|
| >d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Leucine rich effector protein YopM domain: Leucine rich effector protein YopM species: Yersinia pestis [TaxId: 632]
Score = 42.9 bits (99), Expect = 6e-05
Identities = 22/91 (24%), Positives = 34/91 (37%), Gaps = 10/91 (10%)
Query: 17 FNFFIDSILPYLNTLTSLTTLNLRYNKIEGSRTKQGICNLKNLLELDLSSNNFEGHLPQC 76
N + I + SL LN+ NK+ + L L S N+ +P+
Sbjct: 269 LNASSNEIRSLCDLPPSLEELNVSNNKLI-----ELPALPPRLERLIASFNHLA-EVPEL 322
Query: 77 LNNLTHLKVLDISYNQLSGNFPSVLTNLTSL 107
NL L + YN L FP + ++ L
Sbjct: 323 PQNLKQ---LHVEYNPLRE-FPDIPESVEDL 349
|
| >d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Leucine rich effector protein YopM domain: Leucine rich effector protein YopM species: Yersinia pestis [TaxId: 632]
Score = 41.3 bits (95), Expect = 2e-04
Identities = 50/316 (15%), Positives = 87/316 (27%), Gaps = 22/316 (6%)
Query: 32 TSLTTLNLRYNKIEGSRTKQGICNLKNLLELDLSSNNFEGHLPQCLNNLTHLKVLDISYN 91
L L + +L L S N+ LP+ +L L V + +
Sbjct: 38 RQAHELELNNLGLSSLPE-----LPPHLESLVASCNSLT-ELPELPQSLKSLLVDNNNLK 91
Query: 92 QLSGNFPSVLTNLTSLEYLDLSFIDFQGTFLINSLANHSKLEVLVLSSGNDMLQ-VKTEN 150
LS P + S L+ +FL +++ L+ L +
Sbjct: 92 ALSDLPPLLEYLGVSNNQLEKLPELQNSSFLKIIDVDNNSLKKLPDLPPSLEFIAAGNNQ 151
Query: 151 WLPTYPLKVLQLSHCHLNVNSSFLLHQHHLKFLDLSHNQLVGNFPTWLLQNNTGLEVLIL 210
L+ L N+S L+ LQN L +
Sbjct: 152 LEELPELQNLPFLTAIYADNNSLKKLPDLPLSLESIVAGNNILEELPELQNLPFLTTIYA 211
Query: 211 WNNSFSGILPRLPNAKYDKL------RHLDISTNNFSGKLPENLGIVFQKLIYLDVSKNS 264
NN + P+ + + ++ + + EN+ +L N+
Sbjct: 212 DNNLLKTLPDLPPSLEALNVRDNYLTDLPELPQSLTFLDVSENIFSGLSELPPNLYYLNA 271
Query: 265 FEGNIPYSISEMKELITLDLSRNNFSGELPRSIFSSCLSLETLDLSNNNFYGQLFPNFMN 324
I L L++S N + + LE L S N+ P
Sbjct: 272 SSNEIRSLCDLPPSLEELNVSNNKLI-----ELPALPPRLERLIASFNHL--AEVPEL-- 322
Query: 325 LTHLSSLRLNNNHFSG 340
+L L + N
Sbjct: 323 PQNLKQLHVEYNPLRE 338
|
| >d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Leucine rich effector protein YopM domain: Leucine rich effector protein YopM species: Yersinia pestis [TaxId: 632]
Score = 40.6 bits (93), Expect = 3e-04
Identities = 47/333 (14%), Positives = 90/333 (27%), Gaps = 22/333 (6%)
Query: 8 KQLKILNLGFNFFIDSILPYLNTLTSLTTLNLRYNKIEGSRTKQGICNLKNLLELDLSSN 67
+Q L L S LP L L +L N + + +L +
Sbjct: 38 RQAHELELNNLGL--SSLPEL--PPHLESLVASCNSLTELPELPQSLKSLLVDNNNLKAL 93
Query: 68 NFEGHLPQCLNNLTHLKVLDISYNQLSGNFPSVLTNLTSLEYLDLSFIDFQGTFLINSLA 127
+ L + L + S + N + + DL N L
Sbjct: 94 SDLPPLLEYLGVSNNQLEKLPELQNSSFLKIIDVDNNSLKKLPDLPPSLEFIAAGNNQLE 153
Query: 128 NHSKLEVLVLSSGNDMLQVKTENWLPTYPLKVLQLSHCHLNVNSSFLLHQHHLKFLDLSH 187
+L+ L + + ++ ++ L + L + +
Sbjct: 154 ELPELQNLPFLTAIYADNNSLKKLPDLPLSLESIVAGNNILEELPELQNLPFLTTIYADN 213
Query: 188 NQLVGNFPTWLLQNNTGLEVLILWNNS-----FSGILPRLPNAKYDKLRHLDISTNNFSG 242
N L + L + + + ++ N S
Sbjct: 214 NLLKTLPDLPPSLEALNVRDNYLTDLPELPQSLTFLDVSENIFSGLSELPPNLYYLNASS 273
Query: 243 KLPENLGIVFQKLIYLDVSKNSFEGNIPYSISEMKELITLDLSRNNFSGELPRSIFSSCL 302
+L + L L+VS N +P L L S N+ + +
Sbjct: 274 NEIRSLCDLPPSLEELNVSNNKLI-ELPALPP---RLERLIASFNHLA-----EVPELPQ 324
Query: 303 SLETLDLSNNNFYGQLFPNFMNLTHLSSLRLNN 335
+L+ L + N FP+ + LR+N+
Sbjct: 325 NLKQLHVEYNPLRE--FPDI--PESVEDLRMNS 353
|
| >d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Length = 344 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: Rna1p (RanGAP1), N-terminal domain domain: Rna1p (RanGAP1), N-terminal domain species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]
Score = 48.3 bits (113), Expect = 1e-06
Identities = 47/337 (13%), Positives = 84/337 (24%), Gaps = 17/337 (5%)
Query: 8 KQLKILNLGFNFFIDSILPYLNTLTSLTTLNLRYNKIEGSRTK---QGICNLKNLLELDL 64
K LK+ + S+ L S+ + L N I + + I + K+L +
Sbjct: 8 KSLKLDAITTED-EKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEF 66
Query: 65 SSNNFEGHLPQCLNNLTHLKVLDISYNQLSGNFPSVLTNLTSLEYLDLSFIDFQGTFLIN 124
S + L L + +L S + + + F+
Sbjct: 67 SDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHL 126
Query: 125 SLANHSKLEVLVLSSGNDMLQVKTENWLPTYPLK-VLQLSHCHLNVNSSFLLHQHHLKFL 183
L N+ + ++ P + L S +
Sbjct: 127 YLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHR 186
Query: 184 DLSHNQLVGNFPTWLLQNNTGLEVLILWNNSFSGILPRLPNAKYDKLRHLDISTNNFSGK 243
L ++V N + LE L L + + +
Sbjct: 187 LLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLR 246
Query: 244 LPENLGIVFQKLIYLDVSKNSFEGNIPYSISEMKELITLDLSRNNFSGE----LPRSIFS 299
+ V +S E L TL L N + L I
Sbjct: 247 ELGLNDCLLSARGAAAVVDA-------FSKLENIGLQTLRLQYNEIELDAVRTLKTVIDE 299
Query: 300 SCLSLETLDLSNNNFYGQLFPNFMNLTHLSSLRLNNN 336
L L+L+ N F + + + S R
Sbjct: 300 KMPDLLFLELNGNRF-SEEDDVVDEIREVFSTRGRGE 335
|
| >d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Length = 344 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: Rna1p (RanGAP1), N-terminal domain domain: Rna1p (RanGAP1), N-terminal domain species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]
Score = 48.0 bits (112), Expect = 1e-06
Identities = 45/306 (14%), Positives = 87/306 (28%), Gaps = 26/306 (8%)
Query: 60 LELDLSSNNFEGHLPQCLNNLTHLKVLDISYNQLSGN----FPSVLTNLTSLEYLDLSFI 115
L+LD + E + L +K + +S N + + + LE + S I
Sbjct: 10 LKLDAITTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDI 69
Query: 116 DFQGTFLINSLANHSKLEVLVLSSGNDMLQVKTENWLPTYPLKVLQLSHCHLNVNSSFLL 175
A L+ L+ +++ + PT ++ H + +L
Sbjct: 70 FTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLH 129
Query: 176 HQHHL-KFLDLSHNQLVGNFPTWLLQNNTGLEVLILWNNSFSGILPRLPNAKYDKLRHLD 234
+ + L +N L +I N + + R L
Sbjct: 130 NNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLH 189
Query: 235 ISTNNFSGKLPENLGIVFQKLI-----------YLDVSKNSFEGNIPYSISEMKELITLD 283
+G PE + + + + + + + ++ L L
Sbjct: 190 TVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELG 249
Query: 284 LSRNNFSGELPRSI-----FSSCLSLETLDLSNNNFYGQLFPN-----FMNLTHLSSLRL 333
L+ S ++ + L+TL L N + L L L
Sbjct: 250 LNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLEL 309
Query: 334 NNNHFS 339
N N FS
Sbjct: 310 NGNRFS 315
|
| >d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 242 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Follicle-stimulating hormone receptor species: Human (Homo sapiens) [TaxId: 9606]
Score = 45.7 bits (106), Expect = 4e-06
Identities = 37/228 (16%), Positives = 74/228 (32%), Gaps = 3/228 (1%)
Query: 58 NLLELDLSSNNFEGHLPQCLNNLTHLKVLDISYNQLSGNFPSVLTNLTSLEYLDLSFIDF 117
+ + +P L + L +L + LE +++S D
Sbjct: 9 SNRVFLCQESKVT-EIPSDL--PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDV 65
Query: 118 QGTFLINSLANHSKLEVLVLSSGNDMLQVKTENWLPTYPLKVLQLSHCHLNVNSSFLLHQ 177
+ +N KL + + N++L + E + L+ L +S+ +
Sbjct: 66 LEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIH 125
Query: 178 HHLKFLDLSHNQLVGNFPTWLLQNNTGLEVLILWNNSFSGILPRLPNAKYDKLRHLDIST 237
K L + + + E +ILW N +L L++S
Sbjct: 126 SLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNCAFNGTQLDELNLSD 185
Query: 238 NNFSGKLPENLGIVFQKLIYLDVSKNSFEGNIPYSISEMKELITLDLS 285
NN +LP ++ + LD+S+ Y + +K+L
Sbjct: 186 NNNLEELPNDVFHGASGPVILDISRTRIHSLPSYGLENLKKLRARSTY 233
|
| >d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 192 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Slit species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Score = 43.3 bits (100), Expect = 2e-05
Identities = 33/178 (18%), Positives = 63/178 (35%), Gaps = 8/178 (4%)
Query: 281 TLDLSRNNFSGELPRSIFSSCLSLETLDLSNNNFYGQLFPNFM-NLTHLSSLRLNNNHFS 339
T+D + E+PR I L L++N L HL L L N +
Sbjct: 12 TVDCTGRGLK-EIPRDIPLH---TTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLT 67
Query: 340 GKMADGLLSSTLLDVLDVSNNKLSGDIPHWIGNFSVLWLLLMSENYLQGSIPVQLGNLES 399
G + ++ + L + NK+ L L + +N + +P +L S
Sbjct: 68 GIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNS 127
Query: 400 LEFIDISENGLSVSMVSLSNLSSVKHIYLHNNAINGLIPIALLRSSTLLTLDLRDNKF 457
L ++++ N + + ++ L+ A P + + DL ++F
Sbjct: 128 LTSLNLASNPFNCNCHLAWFAEWLRKKSLNGGAARCGAPSKV---RDVQIKDLPHSEF 182
|
| >d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 192 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Slit species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Score = 37.1 bits (84), Expect = 0.002
Identities = 29/159 (18%), Positives = 54/159 (33%), Gaps = 5/159 (3%)
Query: 32 TSLTTLNLRYNKIEGSRTKQGICNLKNLLELDLSSNNFEGHLPQCLNNLTHLKVLDISYN 91
T L L N++ + L +L++L+L N G P +H++ L + N
Sbjct: 29 LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGEN 88
Query: 92 QLSGNFPSVLTNLTSLEYLDLSFIDFQGTFLINSLANHSKLEVLVLSSGNDMLQVKTENW 151
++ + L L+ L+L + S + + L L L+S +
Sbjct: 89 KIKEISNKMFLGLHQLKTLNLYDNQIS-CVMPGSFEHLNSLTSLNLASNPFNCNCHLAWF 147
Query: 152 LPTYPLKVLQLSHCHLNVNSSFLLHQHHLKFLDLSHNQL 190
K L S ++ DL H++
Sbjct: 148 AEWLRKKSLNGGAARCGAPSKV----RDVQIKDLPHSEF 182
|
| >d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin H species: Listeria monocytogenes [TaxId: 1639]
Score = 42.7 bits (99), Expect = 4e-05
Identities = 32/217 (14%), Positives = 69/217 (31%), Gaps = 22/217 (10%)
Query: 252 FQKLIYLDVSKNSFEGNIPYSISEMKELITLDLSRNNFSGELPRSIFSSCLSLETLDLSN 311
I + K++ + + +++ + TL + +L L+L +
Sbjct: 18 LANAIKIAAGKSNVTDTV--TQADLDGITTLSAFGTGVTTI---EGVQYLNNLIGLELKD 72
Query: 312 NNFYGQLFPNFMNLTHLSSLRLNNNHFSGKMADGLLSSTLLDVLDVSNNKLSGDIPHWIG 371
N + L N +A TL + +
Sbjct: 73 NQITDLAPLKNLTKITELELSGNPLKNVSAIAGLQSIKTLDLTSTQITDVTPLAGLSNLQ 132
Query: 372 NFSVLWLLLMSENYL--------------QGSIPVQLGNLESLEFIDISENGLSVSMVSL 417
+ + + + L Q S L NL L + +N +S + L
Sbjct: 133 VLYLDLNQITNISPLAGLTNLQYLSIGNAQVSDLTPLANLSKLTTLKADDNKIS-DISPL 191
Query: 418 SNLSSVKHIYLHNNAINGLIPIALLRSSTLLTLDLRD 454
++L ++ ++L NN I+ + P+A + L + L +
Sbjct: 192 ASLPNLIEVHLKNNQISDVSPLANTSN--LFIVTLTN 226
|
| >d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin H species: Listeria monocytogenes [TaxId: 1639]
Score = 40.4 bits (93), Expect = 2e-04
Identities = 36/231 (15%), Positives = 66/231 (28%), Gaps = 22/231 (9%)
Query: 6 SLKQLKILNLGFNFFIDSILPYLNTLTSLTTLNLRYNKIEGSRTKQGICNLKNLLELDLS 65
+L + G + D++ L +TTL+ + T +G+ L NL+ L+L
Sbjct: 17 ALANAIKIAAGKSNVTDTV--TQADLDGITTLSAFGTGVT---TIEGVQYLNNLIGLELK 71
Query: 66 SNNFEGHLPQCLNNLTHLKVLDISYNQLSGNFPSVLTNLTSLEYLDLSFIDFQGTFLINS 125
N P L + + S T +
Sbjct: 72 DNQITDLAPLKNLTKITELELSGNPLKNVSAI-----------AGLQSIKTLDLTSTQIT 120
Query: 126 LANHSKLEVLVLSSGNDMLQVKTENWLPTYPLKVLQLSHCHLNVNSSFLLHQHHLKFLDL 185
+ D+ Q+ + L + + L + L L
Sbjct: 121 DVTPLAGLSNLQVLYLDLNQITNISPLAGLTNLQYLSIGNAQVSDLTPLANLSKLTTLKA 180
Query: 186 SHNQLVGNFPTWLLQNNTGLEVLILWNNSFSGILPRLPNAKYDKLRHLDIS 236
N++ P L + L + L NN S + P A L + ++
Sbjct: 181 DDNKISDISP---LASLPNLIEVHLKNNQISDV---SPLANTSNLFIVTLT 225
|
| >d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin H species: Listeria monocytogenes [TaxId: 1639]
Score = 36.5 bits (83), Expect = 0.004
Identities = 34/222 (15%), Positives = 63/222 (28%), Gaps = 28/222 (12%)
Query: 55 NLKNLLELDLSSNNFEGHLPQCLNNLTHLKVLDISYNQLSGNFPSVLTNLTSLEYLDLSF 114
L N +++ +N + Q +L + L ++ + L +L L+L
Sbjct: 17 ALANAIKIAAGKSNVTDTVTQ--ADLDGITTLSAFGTGVTT--IEGVQYLNNLIGLELKD 72
Query: 115 IDFQGTFLINSLANHSKLEVLVLSSGNDMLQVKTENWLPTYPLKVLQLSHCHLNVNSSFL 174
+ +L ++LE+ N ++ L S+
Sbjct: 73 NQITDLAPLKNLTKITELELSGNPLKNVSAIAGLQSIKTLDLTSTQITDVTPLAGLSNLQ 132
Query: 175 LHQHHLKFL------------DLSHNQLVGNFPTWLLQNNTGLEVLILWNNSFSGILP-- 220
+ L + L N + L L +N S I P
Sbjct: 133 VLYLDLNQITNISPLAGLTNLQYLSIGNAQVSDLTPLANLSKLTTLKADDNKISDISPLA 192
Query: 221 RLPNAKYDKLRHLDISTNNFSGKLP-ENLGIVFQKLIYLDVS 261
LPN L + + N S P N L + ++
Sbjct: 193 SLPN-----LIEVHLKNNQISDVSPLANT----SNLFIVTLT 225
|
| >d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 156 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: High affinity nerve growth factor receptor, N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 37.8 bits (86), Expect = 7e-04
Identities = 20/140 (14%), Positives = 41/140 (29%), Gaps = 1/140 (0%)
Query: 258 LDVSKNSFEGNIPYSISEMKELITLDLSRNNFSGELPRSIFSSCLSLETLDLSNNNFYGQ 317
L +++ + + + + L L + L L L + +
Sbjct: 13 LRCTRDGAL-DSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFV 71
Query: 318 LFPNFMNLTHLSSLRLNNNHFSGKMADGLLSSTLLDVLDVSNNKLSGDIPHWIGNFSVLW 377
F LS L L+ N + +L +++ N W+ +
Sbjct: 72 APDAFHFTPRLSRLNLSFNALESLSWKTVQGLSLQELVLSGNPLHCSCALRWLQRWEEEG 131
Query: 378 LLLMSENYLQGSIPVQLGNL 397
L + E LQ L ++
Sbjct: 132 LGGVPEQKLQCHGQGPLAHM 151
|
| >d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 37.0 bits (85), Expect = 0.001
Identities = 24/113 (21%), Positives = 38/113 (33%), Gaps = 8/113 (7%)
Query: 2 DSFGSLKQLKILNLGFNFFIDSILPYLNTLTSLTTLNLRYNKIEGSRTKQGICNLKNLLE 61
L + L+L N L +L L + G+ NL L E
Sbjct: 14 CHLEQLLLVTHLDLSHNRLRA----LPPALAALRCLEVLQASDNALENVDGVANLPRLQE 69
Query: 62 LDLSSNNFEG-HLPQCLNNLTHLKVLDISYNQLS---GNFPSVLTNLTSLEYL 110
L L +N + Q L + L +L++ N L G + L S+ +
Sbjct: 70 LLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSI 122
|
| >d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 36.2 bits (83), Expect = 0.002
Identities = 15/106 (14%), Positives = 39/106 (36%), Gaps = 4/106 (3%)
Query: 306 TLDLSNNNFYGQLFPNFMNLTHLSSLRLNNNHFSGKMADGLLSSTLLDVLDVSNNKLSGD 365
L L++ + + + L ++ L L++N L++ + +++ +
Sbjct: 2 VLHLAHKDL--TVLCHLEQLLLVTHLDLSHNRLRALPPA--LAALRCLEVLQASDNALEN 57
Query: 366 IPHWIGNFSVLWLLLMSENYLQGSIPVQLGNLESLEFIDISENGLS 411
+ + LLL + Q + L + L +++ N L
Sbjct: 58 VDGVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLC 103
|
| >d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]} Length = 210 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin B species: Listeria monocytogenes [TaxId: 1639]
Score = 37.7 bits (86), Expect = 0.001
Identities = 30/192 (15%), Positives = 68/192 (35%), Gaps = 20/192 (10%)
Query: 274 SEMKELITLDLSRNNFSGELPRSIFSSCLSLETLDLSNNNFYGQLFPNFMNLTHLSSLRL 333
E I +L + + + + ++ +S ++ + +N++ L +++ L L
Sbjct: 21 DAFAETIKDNLKKKSVTDAVTQNELNS---IDQIIANNSDIKS--VQGIQYLPNVTKLFL 75
Query: 334 NNNHFSGKMADGLLSSTLLDVLDVSNNKLS---------------GDIPHWIGNFSVLWL 378
N N + L + LD + K + I L
Sbjct: 76 NGNKLTDIKPLANLKNLGWLFLDENKVKDLSSLKDLKKLKSLSLEHNGISDINGLVHLPQ 135
Query: 379 LLMSENYLQGSIPVQLGNLESLEFIDISENGLSVSMVSLSNLSSVKHIYLHNNAINGLIP 438
L + + + + E+ +V L+ L+ ++++YL N I+ L
Sbjct: 136 LESLYLGNNKITDITVLSRLTKLDTLSLEDNQISDIVPLAGLTKLQNLYLSKNHISDLRA 195
Query: 439 IALLRSSTLLTL 450
+A L++ +L L
Sbjct: 196 LAGLKNLDVLEL 207
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 487 | |||
| d2omza2 | 384 | Internalin A {Listeria monocytogenes [TaxId: 1639] | 99.94 | |
| d2omza2 | 384 | Internalin A {Listeria monocytogenes [TaxId: 1639] | 99.93 | |
| d1ogqa_ | 313 | Polygalacturonase inhibiting protein PGIP {Kidney | 99.93 | |
| d1ogqa_ | 313 | Polygalacturonase inhibiting protein PGIP {Kidney | 99.91 | |
| d1xkua_ | 305 | Decorin {Cow (Bos taurus) [TaxId: 9913]} | 99.9 | |
| d1xkua_ | 305 | Decorin {Cow (Bos taurus) [TaxId: 9913]} | 99.89 | |
| d1ozna_ | 284 | Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma | 99.89 | |
| d1ozna_ | 284 | Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma | 99.88 | |
| d1p9ag_ | 266 | von Willebrand factor binding domain of glycoprote | 99.86 | |
| d1p9ag_ | 266 | von Willebrand factor binding domain of glycoprote | 99.84 | |
| d1z7xw1 | 460 | Ribonuclease inhibitor {Human (Homo sapiens) [TaxI | 99.78 | |
| d1z7xw1 | 460 | Ribonuclease inhibitor {Human (Homo sapiens) [TaxI | 99.78 | |
| d1h6ua2 | 227 | Internalin H {Listeria monocytogenes [TaxId: 1639] | 99.76 | |
| d1h6ua2 | 227 | Internalin H {Listeria monocytogenes [TaxId: 1639] | 99.73 | |
| d1xwdc1 | 242 | Follicle-stimulating hormone receptor {Human (Homo | 99.71 | |
| d1jl5a_ | 353 | Leucine rich effector protein YopM {Yersinia pesti | 99.7 | |
| d1h6ta2 | 210 | Internalin B {Listeria monocytogenes [TaxId: 1639] | 99.69 | |
| d2omxa2 | 199 | Internalin B {Listeria monocytogenes [TaxId: 1639] | 99.69 | |
| d1jl5a_ | 353 | Leucine rich effector protein YopM {Yersinia pesti | 99.68 | |
| d1xwdc1 | 242 | Follicle-stimulating hormone receptor {Human (Homo | 99.67 | |
| d2astb2 | 284 | Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa | 99.67 | |
| d2astb2 | 284 | Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa | 99.67 | |
| d2omxa2 | 199 | Internalin B {Listeria monocytogenes [TaxId: 1639] | 99.65 | |
| d1h6ta2 | 210 | Internalin B {Listeria monocytogenes [TaxId: 1639] | 99.64 | |
| d1w8aa_ | 192 | Slit {Fruit fly (Drosophila melanogaster) [TaxId: | 99.6 | |
| d1w8aa_ | 192 | Slit {Fruit fly (Drosophila melanogaster) [TaxId: | 99.56 | |
| d2ca6a1 | 344 | Rna1p (RanGAP1), N-terminal domain {Fission yeast | 99.53 | |
| d1a9na_ | 162 | Splicesomal U2A' protein {Human (Homo sapiens) [Ta | 99.5 | |
| d1a9na_ | 162 | Splicesomal U2A' protein {Human (Homo sapiens) [Ta | 99.5 | |
| d1dcea3 | 124 | Rab geranylgeranyltransferase alpha-subunit, C-ter | 99.46 | |
| d1dcea3 | 124 | Rab geranylgeranyltransferase alpha-subunit, C-ter | 99.41 | |
| d2ca6a1 | 344 | Rna1p (RanGAP1), N-terminal domain {Fission yeast | 99.41 | |
| d1m9la_ | 198 | Outer arm dynein light chain 1 {Green algae (Chlam | 99.35 | |
| d1m9la_ | 198 | Outer arm dynein light chain 1 {Green algae (Chlam | 99.21 | |
| d2ifga3 | 156 | High affinity nerve growth factor receptor, N-term | 99.15 | |
| d2ifga3 | 156 | High affinity nerve growth factor receptor, N-term | 99.14 | |
| d1koha1 | 162 | mRNA export factor tap {Human (Homo sapiens) [TaxI | 98.29 | |
| d1koha1 | 162 | mRNA export factor tap {Human (Homo sapiens) [TaxI | 98.11 | |
| d1pgva_ | 167 | Tropomodulin C-terminal domain {nematode (Caenorha | 98.07 | |
| d1pgva_ | 167 | Tropomodulin C-terminal domain {nematode (Caenorha | 98.03 | |
| d1io0a_ | 166 | Tropomodulin C-terminal domain {Chicken (Gallus ga | 97.61 | |
| d1io0a_ | 166 | Tropomodulin C-terminal domain {Chicken (Gallus ga | 97.52 |
| >d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin A species: Listeria monocytogenes [TaxId: 1639]
Probab=99.94 E-value=1.8e-24 Score=202.71 Aligned_cols=189 Identities=23% Similarity=0.330 Sum_probs=106.9
Q ss_pred ccccCcEEecccccCCCCCchhhhcCCCCCcEEECCCCccCCCCCcCCcCCCCccEEEcCCCcccccccccccCCCcccE
Q 036411 275 EMKELITLDLSRNNFSGELPRSIFSSCLSLETLDLSNNNFYGQLFPNFMNLTHLSSLRLNNNHFSGKMADGLLSSTLLDV 354 (487)
Q Consensus 275 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~ 354 (487)
.+++++.++++++.+. .++. +..+++|+.+++.+|.+.+ ...+..+++|+.+++.+|.+.+.. .+..+++|+.
T Consensus 195 ~l~~~~~l~l~~n~i~-~~~~--~~~~~~L~~L~l~~n~l~~--~~~l~~l~~L~~L~l~~n~l~~~~--~~~~~~~L~~ 267 (384)
T d2omza2 195 KLTNLESLIATNNQIS-DITP--LGILTNLDELSLNGNQLKD--IGTLASLTNLTDLDLANNQISNLA--PLSGLTKLTE 267 (384)
T ss_dssp GCTTCSEEECCSSCCC-CCGG--GGGCTTCCEEECCSSCCCC--CGGGGGCTTCSEEECCSSCCCCCG--GGTTCTTCSE
T ss_pred cccccceeeccCCccC-CCCc--ccccCCCCEEECCCCCCCC--cchhhcccccchhccccCccCCCC--cccccccCCE
Confidence 3444444444444443 2221 1223444444444444432 123344444555555555443221 2344555566
Q ss_pred EEccCCccCCCchhhhcccccccEEecCCccccCcchhhhccCcCCcEEeccCCccccccccccCCCcceEEEeeCcccC
Q 036411 355 LDVSNNKLSGDIPHWIGNFSVLWLLLMSENYLQGSIPVQLGNLESLEFIDISENGLSVSMVSLSNLSSVKHIYLHNNAIN 434 (487)
Q Consensus 355 L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 434 (487)
++++++++.+.. .+..++.++.+.+.++.+.+ ...+..+++++.+++++|+++.. ..+..+++|++|++++|+++
T Consensus 268 L~l~~~~l~~~~--~~~~~~~l~~l~~~~n~l~~--~~~~~~~~~l~~L~ls~n~l~~l-~~l~~l~~L~~L~L~~n~l~ 342 (384)
T d2omza2 268 LKLGANQISNIS--PLAGLTALTNLELNENQLED--ISPISNLKNLTYLTLYFNNISDI-SPVSSLTKLQRLFFANNKVS 342 (384)
T ss_dssp EECCSSCCCCCG--GGTTCTTCSEEECCSSCCSC--CGGGGGCTTCSEEECCSSCCSCC-GGGGGCTTCCEEECCSSCCC
T ss_pred eeccCcccCCCC--cccccccccccccccccccc--ccccchhcccCeEECCCCCCCCC-cccccCCCCCEEECCCCCCC
Confidence 666555554322 24555666666666666542 22355666777777777776533 34567777888888888777
Q ss_pred CcchHhhhccCcceEEeCCCCcccccCcccccccCceeEEeccCC
Q 036411 435 GLIPIALLRSSTLLTLDLRDNKFFGRIPHQINELSNLHFLLLRGN 479 (487)
Q Consensus 435 ~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~ 479 (487)
+. + .+..+++|+.|++++|++++..| +.++++|++|+|++|
T Consensus 343 ~l-~-~l~~l~~L~~L~l~~N~l~~l~~--l~~l~~L~~L~L~~N 383 (384)
T d2omza2 343 DV-S-SLANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQ 383 (384)
T ss_dssp CC-G-GGGGCTTCCEEECCSSCCCBCGG--GTTCTTCSEEECCCE
T ss_pred CC-h-hHcCCCCCCEEECCCCcCCCChh--hccCCCCCEeeCCCC
Confidence 54 2 46777888888888888765433 778888888888876
|
| >d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin A species: Listeria monocytogenes [TaxId: 1639]
Probab=99.93 E-value=1.4e-23 Score=196.48 Aligned_cols=356 Identities=25% Similarity=0.278 Sum_probs=210.5
Q ss_pred ecCCccccccccccccCCCCCcEEEccCccccCCcccccccCCCCCcEEECCCCccCCCcchhccCCCCccEEeccCccc
Q 036411 14 NLGFNFFIDSILPYLNTLTSLTTLNLRYNKIEGSRTKQGICNLKNLLELDLSSNNFEGHLPQCLNNLTHLKVLDISYNQL 93 (487)
Q Consensus 14 ~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~ 93 (487)
.++...+.+.+. .+.+.+|++|+++++.|.+. +++..+++|++|++++|++++. + .++++++|++|++++|.+
T Consensus 28 ~l~~~~~~~~~~--~~~l~~l~~L~l~~~~I~~l---~gl~~L~nL~~L~Ls~N~l~~l-~-~l~~L~~L~~L~L~~n~i 100 (384)
T d2omza2 28 VLGKTNVTDTVS--QTDLDQVTTLQADRLGIKSI---DGVEYLNNLTQINFSNNQLTDI-T-PLKNLTKLVDILMNNNQI 100 (384)
T ss_dssp HTTCSSTTSEEC--HHHHTTCCEEECCSSCCCCC---TTGGGCTTCCEEECCSSCCCCC-G-GGTTCTTCCEEECCSSCC
T ss_pred HhCCCCCCCccC--HHHhCCCCEEECCCCCCCCc---cccccCCCCCEEeCcCCcCCCC-c-cccCCccccccccccccc
Confidence 444444433322 34567899999999988743 3578889999999999998854 3 388999999999999988
Q ss_pred cCCccccccCCCCCcEEeccccccCcchhHHHhhccccceEEEeccCCCccccccccccCCCCCceeecccccccccccc
Q 036411 94 SGNFPSVLTNLTSLEYLDLSFIDFQGTFLINSLANHSKLEVLVLSSGNDMLQVKTENWLPTYPLKVLQLSHCHLNVNSSF 173 (487)
Q Consensus 94 ~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~ 173 (487)
.... .+..+++|+.++++++.+.+.... .....+......... +...........
T Consensus 101 ~~i~--~l~~l~~L~~L~~~~~~~~~~~~~---~~~~~~~~~~~~~~~-l~~~~~~~~~~~------------------- 155 (384)
T d2omza2 101 ADIT--PLANLTNLTGLTLFNNQITDIDPL---KNLTNLNRLELSSNT-ISDISALSGLTS------------------- 155 (384)
T ss_dssp CCCG--GGTTCTTCCEEECCSSCCCCCGGG---TTCTTCSEEEEEEEE-ECCCGGGTTCTT-------------------
T ss_pred cccc--cccccccccccccccccccccccc---ccccccccccccccc-cccccccccccc-------------------
Confidence 8543 478899999999988877643322 122222222221100 000000000000
Q ss_pred cccCCcccEEeCCCCcccCCcchHhhhcCCCCcEEEcccCCCCCCCCCCCCcCCCCCcEEEccCCcccccCCcccccccC
Q 036411 174 LLHQHHLKFLDLSHNQLVGNFPTWLLQNNTGLEVLILWNNSFSGILPRLPNAKYDKLRHLDISTNNFSGKLPENLGIVFQ 253 (487)
Q Consensus 174 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~ 253 (487)
............. . .+...+.........+.... ......+++++.+.++++.+.+..+. ..++
T Consensus 156 ----~~~~~~~~~~~~~-----~-~~~~~~~~~~~~~~~~~~~~---~~~~~~l~~~~~l~l~~n~i~~~~~~---~~~~ 219 (384)
T d2omza2 156 ----LQQLSFGNQVTDL-----K-PLANLTTLERLDISSNKVSD---ISVLAKLTNLESLIATNNQISDITPL---GILT 219 (384)
T ss_dssp ----CSEEEEEESCCCC-----G-GGTTCTTCCEEECCSSCCCC---CGGGGGCTTCSEEECCSSCCCCCGGG---GGCT
T ss_pred ----ccccccccccchh-----h-hhcccccccccccccccccc---ccccccccccceeeccCCccCCCCcc---cccC
Confidence 0000000000000 0 01111222222222221111 11224455666666666655532221 2245
Q ss_pred ceEEEEccCCCCCCCcchhhhccccCcEEecccccCCCCCchhhhcCCCCCcEEECCCCccCCCCCcCCcCCCCccEEEc
Q 036411 254 KLIYLDVSKNSFEGNIPYSISEMKELITLDLSRNNFSGELPRSIFSSCLSLETLDLSNNNFYGQLFPNFMNLTHLSSLRL 333 (487)
Q Consensus 254 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l 333 (487)
+|++|++++|.+++. ..+..+++|+.+++++|.+. .++. +..+++|++++++++.+.+. ..+..++.++.+.+
T Consensus 220 ~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~-~~~~--~~~~~~L~~L~l~~~~l~~~--~~~~~~~~l~~l~~ 292 (384)
T d2omza2 220 NLDELSLNGNQLKDI--GTLASLTNLTDLDLANNQIS-NLAP--LSGLTKLTELKLGANQISNI--SPLAGLTALTNLEL 292 (384)
T ss_dssp TCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCC-CCGG--GTTCTTCSEEECCSSCCCCC--GGGTTCTTCSEEEC
T ss_pred CCCEEECCCCCCCCc--chhhcccccchhccccCccC-CCCc--ccccccCCEeeccCcccCCC--Cccccccccccccc
Confidence 677777777776532 24566777777777777776 4443 46677778887777776542 34566777777777
Q ss_pred CCCcccccccccccCCCcccEEEccCCccCCCchhhhcccccccEEecCCccccCcchhhhccCcCCcEEeccCCccccc
Q 036411 334 NNNHFSGKMADGLLSSTLLDVLDVSNNKLSGDIPHWIGNFSVLWLLLMSENYLQGSIPVQLGNLESLEFIDISENGLSVS 413 (487)
Q Consensus 334 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~ 413 (487)
.++.+.+ ...+..+++++.+++++|++.+.. .+..+++|++|++++|++++ .+ .+..+++|+.|++++|+++..
T Consensus 293 ~~n~l~~--~~~~~~~~~l~~L~ls~n~l~~l~--~l~~l~~L~~L~L~~n~l~~-l~-~l~~l~~L~~L~l~~N~l~~l 366 (384)
T d2omza2 293 NENQLED--ISPISNLKNLTYLTLYFNNISDIS--PVSSLTKLQRLFFANNKVSD-VS-SLANLTNINWLSAGHNQISDL 366 (384)
T ss_dssp CSSCCSC--CGGGGGCTTCSEEECCSSCCSCCG--GGGGCTTCCEEECCSSCCCC-CG-GGGGCTTCCEEECCSSCCCBC
T ss_pred ccccccc--ccccchhcccCeEECCCCCCCCCc--ccccCCCCCEEECCCCCCCC-Ch-hHcCCCCCCEEECCCCcCCCC
Confidence 7777653 233566777888888888776543 26777888888888887763 33 467788888888888887644
Q ss_pred cccccCCCcceEEEeeCc
Q 036411 414 MVSLSNLSSVKHIYLHNN 431 (487)
Q Consensus 414 ~~~~~~~~~L~~L~l~~~ 431 (487)
. .+..+++|+.|++++|
T Consensus 367 ~-~l~~l~~L~~L~L~~N 383 (384)
T d2omza2 367 T-PLANLTRITQLGLNDQ 383 (384)
T ss_dssp G-GGTTCTTCSEEECCCE
T ss_pred h-hhccCCCCCEeeCCCC
Confidence 3 3667788888888776
|
| >d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Polygalacturonase inhibiting protein PGIP domain: Polygalacturonase inhibiting protein PGIP species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]
Probab=99.93 E-value=9.5e-26 Score=204.75 Aligned_cols=252 Identities=27% Similarity=0.422 Sum_probs=217.5
Q ss_pred CCcEEEccCCcccc--cCCcccccccCceEEEEccC-CCCCCCcchhhhccccCcEEecccccCCCCCchhhhcCCCCCc
Q 036411 229 KLRHLDISTNNFSG--KLPENLGIVFQKLIYLDVSK-NSFEGNIPYSISEMKELITLDLSRNNFSGELPRSIFSSCLSLE 305 (487)
Q Consensus 229 ~L~~L~l~~~~~~~--~~~~~~~~~~~~L~~L~l~~-~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~ 305 (487)
+++.|+++++.+.+ .+|..++. +++|++|++++ |.+.+.+|..+.++++|++|++++|.+. .++...+..+.+|+
T Consensus 51 ~v~~L~L~~~~l~g~~~lp~~l~~-L~~L~~L~Ls~~N~l~g~iP~~i~~L~~L~~L~Ls~N~l~-~~~~~~~~~~~~L~ 128 (313)
T d1ogqa_ 51 RVNNLDLSGLNLPKPYPIPSSLAN-LPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVS-GAIPDFLSQIKTLV 128 (313)
T ss_dssp CEEEEEEECCCCSSCEECCGGGGG-CTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCE-EECCGGGGGCTTCC
T ss_pred EEEEEECCCCCCCCCCCCChHHhc-Cccccccccccccccccccccccccccccchhhhcccccc-ccccccccchhhhc
Confidence 57788888877665 35666654 58999999987 6787788889999999999999999998 55555578899999
Q ss_pred EEECCCCccCCCCCcCCcCCCCccEEEcCCCcccccccccccCCCcc-cEEEccCCccCCCchhhhcccccccEEecCCc
Q 036411 306 TLDLSNNNFYGQLFPNFMNLTHLSSLRLNNNHFSGKMADGLLSSTLL-DVLDVSNNKLSGDIPHWIGNFSVLWLLLMSEN 384 (487)
Q Consensus 306 ~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L-~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~ 384 (487)
.+++.+|......+..+..++.++.+++++|.+.+..+..+..+..+ +.+++++|++++..+..+..+... .+++..+
T Consensus 129 ~l~l~~N~~~~~~p~~l~~l~~L~~l~l~~n~l~~~ip~~~~~l~~l~~~l~~~~n~l~~~~~~~~~~l~~~-~l~l~~~ 207 (313)
T d1ogqa_ 129 TLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLA-FVDLSRN 207 (313)
T ss_dssp EEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCCCS-EEECCSS
T ss_pred ccccccccccccCchhhccCcccceeeccccccccccccccccccccccccccccccccccccccccccccc-ccccccc
Confidence 99999999888888889999999999999999988888888777765 889999999988888888776555 6999998
Q ss_pred cccCcchhhhccCcCCcEEeccCCccccccccccCCCcceEEEeeCcccCCcchHhhhccCcceEEeCCCCcccccCccc
Q 036411 385 YLQGSIPVQLGNLESLEFIDISENGLSVSMVSLSNLSSVKHIYLHNNAINGLIPIALLRSSTLLTLDLRDNKFFGRIPHQ 464 (487)
Q Consensus 385 ~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~ 464 (487)
...+..+..+..+++++.+++.++.+...+..+..+++|+.|++++|++++.+|..+..+++|+.|+|++|++++.+|+
T Consensus 208 ~~~~~~~~~~~~~~~l~~l~~~~~~l~~~~~~~~~~~~L~~L~Ls~N~l~g~iP~~l~~L~~L~~L~Ls~N~l~g~iP~- 286 (313)
T d1ogqa_ 208 MLEGDASVLFGSDKNTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQ- 286 (313)
T ss_dssp EEEECCGGGCCTTSCCSEEECCSSEECCBGGGCCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCC-
T ss_pred cccccccccccccccccccccccccccccccccccccccccccCccCeecccCChHHhCCCCCCEEECcCCcccccCCC-
Confidence 8888888888899999999999999987777888899999999999999988899999999999999999999988885
Q ss_pred ccccCceeEEeccCCc-cCCC
Q 036411 465 INELSNLHFLLLRGNS-LQGR 484 (487)
Q Consensus 465 l~~l~~L~~L~l~~~~-~~~~ 484 (487)
++++++|+.+++++|+ +.|.
T Consensus 287 ~~~L~~L~~l~l~~N~~l~g~ 307 (313)
T d1ogqa_ 287 GGNLQRFDVSAYANNKCLCGS 307 (313)
T ss_dssp STTGGGSCGGGTCSSSEEEST
T ss_pred cccCCCCCHHHhCCCccccCC
Confidence 5889999999999998 5554
|
| >d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Polygalacturonase inhibiting protein PGIP domain: Polygalacturonase inhibiting protein PGIP species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]
Probab=99.91 E-value=2.9e-24 Score=194.89 Aligned_cols=232 Identities=29% Similarity=0.408 Sum_probs=203.8
Q ss_pred CceEEEEccCCCCCCC--cchhhhccccCcEEeccc-ccCCCCCchhhhcCCCCCcEEECCCCccCCCCCcCCcCCCCcc
Q 036411 253 QKLIYLDVSKNSFEGN--IPYSISEMKELITLDLSR-NNFSGELPRSIFSSCLSLETLDLSNNNFYGQLFPNFMNLTHLS 329 (487)
Q Consensus 253 ~~L~~L~l~~~~~~~~--~~~~~~~~~~L~~L~l~~-~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~ 329 (487)
.++++|+++++.+.+. .+..+.++++|++|++++ |.+.+.+|.. ++++++|++|++++|.+.+..+..+..++.|+
T Consensus 50 ~~v~~L~L~~~~l~g~~~lp~~l~~L~~L~~L~Ls~~N~l~g~iP~~-i~~L~~L~~L~Ls~N~l~~~~~~~~~~~~~L~ 128 (313)
T d1ogqa_ 50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPA-IAKLTQLHYLYITHTNVSGAIPDFLSQIKTLV 128 (313)
T ss_dssp CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGG-GGGCTTCSEEEEEEECCEEECCGGGGGCTTCC
T ss_pred EEEEEEECCCCCCCCCCCCChHHhcCccccccccccccccccccccc-cccccccchhhhccccccccccccccchhhhc
Confidence 3699999999998763 578899999999999987 6788789887 57899999999999999887788888999999
Q ss_pred EEEcCCCcccccccccccCCCcccEEEccCCccCCCchhhhcccccc-cEEecCCccccCcchhhhccCcCCcEEeccCC
Q 036411 330 SLRLNNNHFSGKMADGLLSSTLLDVLDVSNNKLSGDIPHWIGNFSVL-WLLLMSENYLQGSIPVQLGNLESLEFIDISEN 408 (487)
Q Consensus 330 ~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L-~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~ 408 (487)
.+++.+|.+....+..+..++.++.+++++|.+.+.+|..+..+..+ +.+++++|++++..+..+..+..+ .+++.++
T Consensus 129 ~l~l~~N~~~~~~p~~l~~l~~L~~l~l~~n~l~~~ip~~~~~l~~l~~~l~~~~n~l~~~~~~~~~~l~~~-~l~l~~~ 207 (313)
T d1ogqa_ 129 TLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLA-FVDLSRN 207 (313)
T ss_dssp EEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCCCS-EEECCSS
T ss_pred ccccccccccccCchhhccCcccceeeccccccccccccccccccccccccccccccccccccccccccccc-ccccccc
Confidence 99999999888888899999999999999999988889888888776 889999999988778777766554 6889888
Q ss_pred cccc-ccccccCCCcceEEEeeCcccCCcchHhhhccCcceEEeCCCCcccccCcccccccCceeEEeccCCccCCCCCC
Q 036411 409 GLSV-SMVSLSNLSSVKHIYLHNNAINGLIPIALLRSSTLLTLDLRDNKFFGRIPHQINELSNLHFLLLRGNSLQGRIPN 487 (487)
Q Consensus 409 ~~~~-~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~p~ 487 (487)
.... .+..+..+++++.+++.+|.+...++ .+..+++|+.|++++|++++.+|+.++++++|++|++++|.++|.+|+
T Consensus 208 ~~~~~~~~~~~~~~~l~~l~~~~~~l~~~~~-~~~~~~~L~~L~Ls~N~l~g~iP~~l~~L~~L~~L~Ls~N~l~g~iP~ 286 (313)
T d1ogqa_ 208 MLEGDASVLFGSDKNTQKIHLAKNSLAFDLG-KVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQ 286 (313)
T ss_dssp EEEECCGGGCCTTSCCSEEECCSSEECCBGG-GCCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCC
T ss_pred ccccccccccccccccccccccccccccccc-ccccccccccccCccCeecccCChHHhCCCCCCEEECcCCcccccCCC
Confidence 7753 34445588999999999999987655 577789999999999999999999999999999999999999999995
|
| >d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Decorin species: Cow (Bos taurus) [TaxId: 9913]
Probab=99.90 E-value=5e-22 Score=179.31 Aligned_cols=176 Identities=20% Similarity=0.265 Sum_probs=91.8
Q ss_pred cCcEEecccccCCCCCchhhhcCCCCCcEEECCCCccC--CCCCcCCcCCCCccEEEcCCCcccccccccccCCCcccEE
Q 036411 278 ELITLDLSRNNFSGELPRSIFSSCLSLETLDLSNNNFY--GQLFPNFMNLTHLSSLRLNNNHFSGKMADGLLSSTLLDVL 355 (487)
Q Consensus 278 ~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~--~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L 355 (487)
.++.|.+.++.+. .++...+.....+..++...+... ......+..+++|+.+.+.+|.+.. .+.. .+++|+.|
T Consensus 101 ~l~~L~~~~n~l~-~l~~~~~~~~~~~~~l~~~~n~~~~~~~~~~~~~~l~~L~~l~l~~n~l~~-l~~~--~~~~L~~L 176 (305)
T d1xkua_ 101 TLQELRVHENEIT-KVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITT-IPQG--LPPSLTEL 176 (305)
T ss_dssp TCCEEECCSSCCC-BBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCCS-CCSS--CCTTCSEE
T ss_pred hhhhhhccccchh-hhhhhhhhccccccccccccccccccCCCccccccccccCccccccCCccc-cCcc--cCCccCEE
Confidence 3444444444444 344444444444444444444321 1222234444555555555554442 1211 13455666
Q ss_pred EccCCccCCCchhhhcccccccEEecCCccccCcchhhhccCcCCcEEeccCCccccccccccCCCcceEEEeeCcccCC
Q 036411 356 DVSNNKLSGDIPHWIGNFSVLWLLLMSENYLQGSIPVQLGNLESLEFIDISENGLSVSMVSLSNLSSVKHIYLHNNAING 435 (487)
Q Consensus 356 ~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~ 435 (487)
++++|......+..+..++.++.|++++|.+....+..+..+++|++|++++|+++..+..+..+++|++|++++|+++.
T Consensus 177 ~l~~n~~~~~~~~~~~~~~~l~~L~~s~n~l~~~~~~~~~~l~~L~~L~L~~N~L~~lp~~l~~l~~L~~L~Ls~N~i~~ 256 (305)
T d1xkua_ 177 HLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVKVPGGLADHKYIQVVYLHNNNISA 256 (305)
T ss_dssp ECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCSSCCTTTTTCSSCCEEECCSSCCCC
T ss_pred ECCCCcCCCCChhHhhccccccccccccccccccccccccccccceeeecccccccccccccccccCCCEEECCCCccCc
Confidence 66666555555555566666666666666665544555566666666666666665555555566666666666666665
Q ss_pred cchHhh------hccCcceEEeCCCCcc
Q 036411 436 LIPIAL------LRSSTLLTLDLRDNKF 457 (487)
Q Consensus 436 ~~~~~~------~~~~~L~~L~l~~~~~ 457 (487)
+....| ....+|+.|+|++|++
T Consensus 257 i~~~~f~~~~~~~~~~~L~~L~L~~N~~ 284 (305)
T d1xkua_ 257 IGSNDFCPPGYNTKKASYSGVSLFSNPV 284 (305)
T ss_dssp CCTTSSSCSSCCTTSCCCSEEECCSSSS
T ss_pred cChhhccCcchhcccCCCCEEECCCCcC
Confidence 433222 2345666666666665
|
| >d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Decorin species: Cow (Bos taurus) [TaxId: 9913]
Probab=99.89 E-value=2.2e-21 Score=174.99 Aligned_cols=280 Identities=23% Similarity=0.245 Sum_probs=204.2
Q ss_pred CceeecccccccccccccccCCcccEEeCCCCcccCCcchHhhhcCCCCcEEEcccCCCCCCCCCCCCcCCCCCcEEEcc
Q 036411 157 LKVLQLSHCHLNVNSSFLLHQHHLKFLDLSHNQLVGNFPTWLLQNNTGLEVLILWNNSFSGILPRLPNAKYDKLRHLDIS 236 (487)
Q Consensus 157 L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~ 236 (487)
.+.++.++..++.+|..+. +++++|++++|+++ .++...+..+++|++|++.++.+....+. .+..+++|+.+++.
T Consensus 12 ~~~~~C~~~~L~~lP~~l~--~~l~~L~Ls~N~i~-~l~~~~f~~l~~L~~L~l~~n~~~~i~~~-~f~~l~~L~~L~l~ 87 (305)
T d1xkua_ 12 LRVVQCSDLGLEKVPKDLP--PDTALLDLQNNKIT-EIKDGDFKNLKNLHTLILINNKISKISPG-AFAPLVKLERLYLS 87 (305)
T ss_dssp TTEEECTTSCCCSCCCSCC--TTCCEEECCSSCCC-CBCTTTTTTCTTCCEEECCSSCCCCBCTT-TTTTCTTCCEEECC
T ss_pred CCEEEecCCCCCccCCCCC--CCCCEEECcCCcCC-CcChhHhhccccccccccccccccccchh-hhhCCCccCEeccc
Confidence 4556666655666665442 57888888888776 66665666788888888888877765444 45678888888888
Q ss_pred CCcccccCCcccccccCceEEEEccCCCCCCCcchhhhccccCcEEecccccCCC-CCchhhhcCCCCCcEEECCCCccC
Q 036411 237 TNNFSGKLPENLGIVFQKLIYLDVSKNSFEGNIPYSISEMKELITLDLSRNNFSG-ELPRSIFSSCLSLETLDLSNNNFY 315 (487)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~-~~~~~~~~~~~~L~~L~l~~~~~~ 315 (487)
+|.+. .++... .+.++.|++.++.+.......+......+.+....+.... ......|..+++|+.+++.+|.+.
T Consensus 88 ~n~l~-~l~~~~---~~~l~~L~~~~n~l~~l~~~~~~~~~~~~~l~~~~n~~~~~~~~~~~~~~l~~L~~l~l~~n~l~ 163 (305)
T d1xkua_ 88 KNQLK-ELPEKM---PKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNIT 163 (305)
T ss_dssp SSCCS-BCCSSC---CTTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCC
T ss_pred CCccC-cCccch---hhhhhhhhccccchhhhhhhhhhccccccccccccccccccCCCccccccccccCccccccCCcc
Confidence 88776 455443 3578888888888876555566677777888877765431 122345677888999999888876
Q ss_pred CCCCcCCcCCCCccEEEcCCCcccccccccccCCCcccEEEccCCccCCCchhhhcccccccEEecCCccccCcchhhhc
Q 036411 316 GQLFPNFMNLTHLSSLRLNNNHFSGKMADGLLSSTLLDVLDVSNNKLSGDIPHWIGNFSVLWLLLMSENYLQGSIPVQLG 395 (487)
Q Consensus 316 ~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~ 395 (487)
.. +.. .+++|++|++.+|......+..+..++.++.|++++|.+.+..+..+.++++|++|++++|.++ ..|..+.
T Consensus 164 ~l-~~~--~~~~L~~L~l~~n~~~~~~~~~~~~~~~l~~L~~s~n~l~~~~~~~~~~l~~L~~L~L~~N~L~-~lp~~l~ 239 (305)
T d1xkua_ 164 TI-PQG--LPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLA 239 (305)
T ss_dssp SC-CSS--CCTTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCS-SCCTTTT
T ss_pred cc-Ccc--cCCccCEEECCCCcCCCCChhHhhccccccccccccccccccccccccccccceeeeccccccc-ccccccc
Confidence 43 222 3578899999998888777778888889999999999888777888889999999999999887 5677888
Q ss_pred cCcCCcEEeccCCccccccc-------cccCCCcceEEEeeCcccC--CcchHhhhccCcce
Q 036411 396 NLESLEFIDISENGLSVSMV-------SLSNLSSVKHIYLHNNAIN--GLIPIALLRSSTLL 448 (487)
Q Consensus 396 ~~~~L~~l~l~~~~~~~~~~-------~~~~~~~L~~L~l~~~~~~--~~~~~~~~~~~~L~ 448 (487)
.+++|+.|++++|+++.... .....++|+.|++++|++. ...|.+|.......
T Consensus 240 ~l~~L~~L~Ls~N~i~~i~~~~f~~~~~~~~~~~L~~L~L~~N~~~~~~~~~~~f~~~~~~~ 301 (305)
T d1xkua_ 240 DHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRA 301 (305)
T ss_dssp TCSSCCEEECCSSCCCCCCTTSSSCSSCCTTSCCCSEEECCSSSSCGGGSCGGGGTTCCCGG
T ss_pred cccCCCEEECCCCccCccChhhccCcchhcccCCCCEEECCCCcCccCcCCHhHhcccccCc
Confidence 89999999999998864321 2235688999999999875 34556665444333
|
| >d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.89 E-value=3.5e-22 Score=178.15 Aligned_cols=223 Identities=19% Similarity=0.191 Sum_probs=184.0
Q ss_pred EEEccCCcccccCCcccccccCceEEEEccCCCCCCCcchhhhccccCcEEecccccCCCCCchhhhcCCCCCcEEECCC
Q 036411 232 HLDISTNNFSGKLPENLGIVFQKLIYLDVSKNSFEGNIPYSISEMKELITLDLSRNNFSGELPRSIFSSCLSLETLDLSN 311 (487)
Q Consensus 232 ~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~ 311 (487)
.+..++.+++ .+|..+ ++.+++|+|++|.+++..+..+.++++|+.|+++++.+. .++...+..+..++.+....
T Consensus 15 ~v~c~~~~L~-~iP~~i---p~~~~~L~Ls~N~i~~i~~~~f~~l~~L~~L~ls~n~l~-~i~~~~~~~~~~~~~l~~~~ 89 (284)
T d1ozna_ 15 TTSCPQQGLQ-AVPVGI---PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLA-RIDAAAFTGLALLEQLDLSD 89 (284)
T ss_dssp EEECCSSCCS-SCCTTC---CTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCC-EECTTTTTTCTTCCEEECCS
T ss_pred EEEcCCCCCC-ccCCCC---CCCCCEEECcCCcCCCCCHHHhhcccccccccccccccc-cccccccccccccccccccc
Confidence 4556666665 666655 467899999999998665667888999999999999987 77777788888899887764
Q ss_pred -CccCCCCCcCCcCCCCccEEEcCCCcccccccccccCCCcccEEEccCCccCCCchhhhcccccccEEecCCccccCcc
Q 036411 312 -NNFYGQLFPNFMNLTHLSSLRLNNNHFSGKMADGLLSSTLLDVLDVSNNKLSGDIPHWIGNFSVLWLLLMSENYLQGSI 390 (487)
Q Consensus 312 -~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~ 390 (487)
+.+....+..+..+++|+.|++.+|.+.......+.....|+.+++++|+++...+..+..+++|++|++++|.+....
T Consensus 90 ~~~~~~l~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~l~l~~N~l~~i~~~~f~~~~~L~~L~l~~N~l~~l~ 169 (284)
T d1ozna_ 90 NAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVP 169 (284)
T ss_dssp CTTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEEC
T ss_pred ccccccccchhhcccccCCEEecCCcccccccccccchhcccchhhhccccccccChhHhccccchhhcccccCcccccc
Confidence 4455566777888999999999999887666777777889999999999998777788888999999999999988777
Q ss_pred hhhhccCcCCcEEeccCCccccc-cccccCCCcceEEEeeCcccCCcchHhhhccCcceEEeCCCCcccc
Q 036411 391 PVQLGNLESLEFIDISENGLSVS-MVSLSNLSSVKHIYLHNNAINGLIPIALLRSSTLLTLDLRDNKFFG 459 (487)
Q Consensus 391 ~~~~~~~~~L~~l~l~~~~~~~~-~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~ 459 (487)
+..|..+++|+.+++++|+++.. +..+..+++|++|++++|.+.+..+.++..+++|+.|++++|++.+
T Consensus 170 ~~~f~~l~~L~~l~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~i~~~~~~~~~~~~~L~~L~l~~N~l~C 239 (284)
T d1ozna_ 170 ERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVC 239 (284)
T ss_dssp TTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEEC
T ss_pred hhhhccccccchhhhhhccccccChhHhhhhhhcccccccccccccccccccccccccCEEEecCCCCCC
Confidence 77888899999999999988543 5667788999999999999998888889899999999999998853
|
| >d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.88 E-value=2.4e-22 Score=179.23 Aligned_cols=254 Identities=18% Similarity=0.113 Sum_probs=201.4
Q ss_pred EEEcccCCCCCCCCCCCCcCCCCCcEEEccCCcccccCCcccccccCceEEEEccCCCCCCCcchhhhccccCcEEeccc
Q 036411 207 VLILWNNSFSGILPRLPNAKYDKLRHLDISTNNFSGKLPENLGIVFQKLIYLDVSKNSFEGNIPYSISEMKELITLDLSR 286 (487)
Q Consensus 207 ~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~ 286 (487)
.+.+++..++..+.. -.++++.|++++|.++ .++...+..+++|++|+++++.+.......+..++.++.+.+..
T Consensus 15 ~v~c~~~~L~~iP~~----ip~~~~~L~Ls~N~i~-~i~~~~f~~l~~L~~L~ls~n~l~~i~~~~~~~~~~~~~l~~~~ 89 (284)
T d1ozna_ 15 TTSCPQQGLQAVPVG----IPAASQRIFLHGNRIS-HVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSD 89 (284)
T ss_dssp EEECCSSCCSSCCTT----CCTTCSEEECTTSCCC-EECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred EEEcCCCCCCccCCC----CCCCCCEEECcCCcCC-CCCHHHhhcccccccccccccccccccccccccccccccccccc
Confidence 455566555543222 2357899999999997 56665555678999999999998877777788888999988765
Q ss_pred ccCCCCCchhhhcCCCCCcEEECCCCccCCCCCcCCcCCCCccEEEcCCCcccccccccccCCCcccEEEccCCccCCCc
Q 036411 287 NNFSGELPRSIFSSCLSLETLDLSNNNFYGQLFPNFMNLTHLSSLRLNNNHFSGKMADGLLSSTLLDVLDVSNNKLSGDI 366 (487)
Q Consensus 287 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~ 366 (487)
+.....++...|+++++|++|++++|.+.......+..+++|+.+++.+|.+++.....+..+++|+.|++++|++....
T Consensus 90 ~~~~~~l~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~l~l~~N~l~~i~~~~f~~~~~L~~L~l~~N~l~~l~ 169 (284)
T d1ozna_ 90 NAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVP 169 (284)
T ss_dssp CTTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEEC
T ss_pred ccccccccchhhcccccCCEEecCCcccccccccccchhcccchhhhccccccccChhHhccccchhhcccccCcccccc
Confidence 44333787778899999999999999987777777888899999999999998777778888899999999999998777
Q ss_pred hhhhcccccccEEecCCccccCcchhhhccCcCCcEEeccCCcccccc-ccccCCCcceEEEeeCcccCCcch-Hhhhcc
Q 036411 367 PHWIGNFSVLWLLLMSENYLQGSIPVQLGNLESLEFIDISENGLSVSM-VSLSNLSSVKHIYLHNNAINGLIP-IALLRS 444 (487)
Q Consensus 367 ~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~~~-~~~~~~ 444 (487)
+..+..+++|+++++.+|.+++..+..|..+++|+.|++++|.+.... ..+..+++|++|++++|.+...-+ .++.
T Consensus 170 ~~~f~~l~~L~~l~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~i~~~~~~~~~~~~~L~~L~l~~N~l~C~C~~~~l~-- 247 (284)
T d1ozna_ 170 ERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCRARPLW-- 247 (284)
T ss_dssp TTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEECSGGGHHHH--
T ss_pred hhhhccccccchhhhhhccccccChhHhhhhhhcccccccccccccccccccccccccCEEEecCCCCCCCccchHHH--
Confidence 888999999999999999999888899999999999999999986444 456689999999999998875422 2222
Q ss_pred CcceEEeCCCCcccccCcccccc
Q 036411 445 STLLTLDLRDNKFFGRIPHQINE 467 (487)
Q Consensus 445 ~~L~~L~l~~~~~~~~~~~~l~~ 467 (487)
..++.+....+++.+..|..+.+
T Consensus 248 ~~l~~~~~~~~~~~C~~p~~l~g 270 (284)
T d1ozna_ 248 AWLQKFRGSSSEVPCSLPQRLAG 270 (284)
T ss_dssp HHHHHCCSEECCCBEEESGGGTT
T ss_pred HHHHhCcCCCCceEeCCchHHcC
Confidence 34556666667777777766654
|
| >d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: von Willebrand factor binding domain of glycoprotein Ib alpha species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.86 E-value=5.9e-21 Score=168.10 Aligned_cols=197 Identities=21% Similarity=0.229 Sum_probs=125.9
Q ss_pred ceEEEEccCCCCCCCcchhhhccccCcEEecccccCCCCCchhhhcCCCCCcEEECCCCccCCCCCcCCcCCCCccEEEc
Q 036411 254 KLIYLDVSKNSFEGNIPYSISEMKELITLDLSRNNFSGELPRSIFSSCLSLETLDLSNNNFYGQLFPNFMNLTHLSSLRL 333 (487)
Q Consensus 254 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l 333 (487)
.+.+++.+++.++ .+|..+. ++++.|++++|.+. .++...|.++++|++|++++|.+... +.+..+++|++|++
T Consensus 11 ~~~~v~C~~~~L~-~iP~~lp--~~l~~L~Ls~N~i~-~l~~~~f~~l~~L~~L~L~~N~l~~l--~~~~~l~~L~~L~L 84 (266)
T d1p9ag_ 11 SHLEVNCDKRNLT-ALPPDLP--KDTTILHLSENLLY-TFSLATLMPYTRLTQLNLDRAELTKL--QVDGTLPVLGTLDL 84 (266)
T ss_dssp TCCEEECTTSCCS-SCCSCCC--TTCCEEECTTSCCS-EEEGGGGTTCTTCCEEECTTSCCCEE--ECCSCCTTCCEEEC
T ss_pred CCeEEEccCCCCC-eeCcCcC--cCCCEEECcCCcCC-CcCHHHhhcccccccccccccccccc--cccccccccccccc
Confidence 4455677777666 3444332 46777788877776 67766677777788888877776532 23456677777777
Q ss_pred CCCcccccccccccCCCcccEEEccCCccCCCchhhhcccccccEEecCCccccCcchhhhccCcCCcEEeccCCccccc
Q 036411 334 NNNHFSGKMADGLLSSTLLDVLDVSNNKLSGDIPHWIGNFSVLWLLLMSENYLQGSIPVQLGNLESLEFIDISENGLSVS 413 (487)
Q Consensus 334 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~ 413 (487)
++|.+. ..+..+..+++|+.|+++++.+....+..+..+.+++++++++|.+....+..+..+++++.+++++|+++..
T Consensus 85 s~N~l~-~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~l~~L~l~~n~l~~l~~~~~~~l~~l~~l~l~~N~l~~~ 163 (266)
T d1p9ag_ 85 SHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTEL 163 (266)
T ss_dssp CSSCCS-SCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSCC
T ss_pred cccccc-ccccccccccccccccccccccceeeccccccccccccccccccccceeccccccccccchhccccccccccc
Confidence 777766 3444566667777777777776655566666667777777777766655555556666666666666666543
Q ss_pred c-ccccCCCcceEEEeeCcccCCcchHhhhccCcceEEeCCCCccc
Q 036411 414 M-VSLSNLSSVKHIYLHNNAINGLIPIALLRSSTLLTLDLRDNKFF 458 (487)
Q Consensus 414 ~-~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 458 (487)
. ..+..+++|++|++++|+++.+ |..+..+++|+.|+|++|++.
T Consensus 164 ~~~~~~~l~~L~~L~Ls~N~L~~l-p~~~~~~~~L~~L~L~~Np~~ 208 (266)
T d1p9ag_ 164 PAGLLNGLENLDTLLLQENSLYTI-PKGFFGSHLLPFAFLHGNPWL 208 (266)
T ss_dssp CTTTTTTCTTCCEEECCSSCCCCC-CTTTTTTCCCSEEECCSCCBC
T ss_pred CccccccccccceeecccCCCccc-ChhHCCCCCCCEEEecCCCCC
Confidence 3 2344566666666666666643 334444566666666666653
|
| >d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: von Willebrand factor binding domain of glycoprotein Ib alpha species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.84 E-value=4.1e-20 Score=162.60 Aligned_cols=199 Identities=22% Similarity=0.189 Sum_probs=148.2
Q ss_pred CCcEEEccCCcccccCCcccccccCceEEEEccCCCCCCCcchhhhccccCcEEecccccCCCCCchhhhcCCCCCcEEE
Q 036411 229 KLRHLDISTNNFSGKLPENLGIVFQKLIYLDVSKNSFEGNIPYSISEMKELITLDLSRNNFSGELPRSIFSSCLSLETLD 308 (487)
Q Consensus 229 ~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~ 308 (487)
.+.+++.+++.++ .+|..+ ++++++|+|++|.+++..+..+.++++|++|++++|.++ .++. +..+++|++|+
T Consensus 11 ~~~~v~C~~~~L~-~iP~~l---p~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~L~~N~l~-~l~~--~~~l~~L~~L~ 83 (266)
T d1p9ag_ 11 SHLEVNCDKRNLT-ALPPDL---PKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELT-KLQV--DGTLPVLGTLD 83 (266)
T ss_dssp TCCEEECTTSCCS-SCCSCC---CTTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCC-EEEC--CSCCTTCCEEE
T ss_pred CCeEEEccCCCCC-eeCcCc---CcCCCEEECcCCcCCCcCHHHhhcccccccccccccccc-cccc--ccccccccccc
Confidence 3445566666665 456554 356788888888777555566777888888888888776 6654 45677888888
Q ss_pred CCCCccCCCCCcCCcCCCCccEEEcCCCcccccccccccCCCcccEEEccCCccCCCchhhhcccccccEEecCCccccC
Q 036411 309 LSNNNFYGQLFPNFMNLTHLSSLRLNNNHFSGKMADGLLSSTLLDVLDVSNNKLSGDIPHWIGNFSVLWLLLMSENYLQG 388 (487)
Q Consensus 309 l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~ 388 (487)
+++|.+.. .+..+..+++|+.|+++++.+.......+..+.+++.|++++|.+....+..+..+++++.+++++|+++.
T Consensus 84 Ls~N~l~~-~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~l~~L~l~~n~l~~l~~~~~~~l~~l~~l~l~~N~l~~ 162 (266)
T d1p9ag_ 84 LSHNQLQS-LPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTE 162 (266)
T ss_dssp CCSSCCSS-CCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSC
T ss_pred cccccccc-cccccccccccccccccccccceeeccccccccccccccccccccceeccccccccccchhcccccccccc
Confidence 88887764 34566777888888888887776666667777888888888888876667777778888888888888876
Q ss_pred cchhhhccCcCCcEEeccCCccccccccccCCCcceEEEeeCcccCC
Q 036411 389 SIPVQLGNLESLEFIDISENGLSVSMVSLSNLSSVKHIYLHNNAING 435 (487)
Q Consensus 389 ~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~ 435 (487)
..+..|..+++|+.|++++|+++..+..+..+++|+.|++.+|++.-
T Consensus 163 ~~~~~~~~l~~L~~L~Ls~N~L~~lp~~~~~~~~L~~L~L~~Np~~C 209 (266)
T d1p9ag_ 163 LPAGLLNGLENLDTLLLQENSLYTIPKGFFGSHLLPFAFLHGNPWLC 209 (266)
T ss_dssp CCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCCCSEEECCSCCBCC
T ss_pred cCccccccccccceeecccCCCcccChhHCCCCCCCEEEecCCCCCC
Confidence 66677778888888888888887777777778888888888887663
|
| >d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: 28-residue LRR domain: Ribonuclease inhibitor species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.78 E-value=7.5e-21 Score=182.21 Aligned_cols=113 Identities=21% Similarity=0.238 Sum_probs=83.3
Q ss_pred ccccEEecCCccccccc-cccccCCCCCcEEEccCccccCCc---ccccccCCCCCcEEECCCCccCCCcchh----cc-
Q 036411 8 KQLKILNLGFNFFIDSI-LPYLNTLTSLTTLNLRYNKIEGSR---TKQGICNLKNLLELDLSSNNFEGHLPQC----LN- 78 (487)
Q Consensus 8 ~~L~~L~l~~~~~~~~~-~~~~~~~~~L~~L~l~~~~~~~~~---~~~~~~~~~~L~~L~l~~~~~~~~~~~~----~~- 78 (487)
.+|++|+++.+++++.. .+.+..++++++|++++|.+++.. ...++..+++|++|++++|.+++..... +.
T Consensus 2 ~~l~~ld~~~~~i~~~~~~~l~~~l~~l~~L~L~~~~i~~~~~~~l~~~L~~~~~L~~LdLs~N~i~~~~~~~l~~~l~~ 81 (460)
T d1z7xw1 2 LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQT 81 (460)
T ss_dssp EEEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCS
T ss_pred CCCCEEEeeCCcCChHHHHHHHHhCCCCCEEEeCCCCCCHHHHHHHHHHHhcCCCCCEEECcCCcCChHHHHHHHHHHhc
Confidence 46899999998887653 445677899999999999876322 1234678999999999999886432222 22
Q ss_pred CCCCccEEeccCccccCC----ccccccCCCCCcEEeccccccCcc
Q 036411 79 NLTHLKVLDISYNQLSGN----FPSVLTNLTSLEYLDLSFIDFQGT 120 (487)
Q Consensus 79 ~l~~L~~L~l~~~~~~~~----~~~~~~~~~~L~~L~l~~~~~~~~ 120 (487)
...+|++|++++|.+++. ++..+..+++|++|++++|.+...
T Consensus 82 ~~~~L~~L~L~~n~it~~~~~~l~~~l~~~~~L~~L~L~~N~i~~~ 127 (460)
T d1z7xw1 82 PSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDA 127 (460)
T ss_dssp TTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHH
T ss_pred CCCCCCEEECCCCCccccccccccchhhccccccccccccccchhh
Confidence 235799999999988643 445677889999999999887643
|
| >d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: 28-residue LRR domain: Ribonuclease inhibitor species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.78 E-value=5.1e-21 Score=183.39 Aligned_cols=221 Identities=18% Similarity=0.135 Sum_probs=121.5
Q ss_pred ceEEEEccCCCCCCCc----chhhhccccCcEEecccccCCCC----CchhhhcCCCCCcEEECCCCccCCCC----CcC
Q 036411 254 KLIYLDVSKNSFEGNI----PYSISEMKELITLDLSRNNFSGE----LPRSIFSSCLSLETLDLSNNNFYGQL----FPN 321 (487)
Q Consensus 254 ~L~~L~l~~~~~~~~~----~~~~~~~~~L~~L~l~~~~~~~~----~~~~~~~~~~~L~~L~l~~~~~~~~~----~~~ 321 (487)
....+.+..+...... ...+...+.++.+.+.++.+.+. .....+.....++.+++++|.+.... ...
T Consensus 199 ~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~n~~~~~~~~~~~~~~~~~~~~l~~l~l~~n~i~~~~~~~~~~~ 278 (460)
T d1z7xw1 199 QLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRV 278 (460)
T ss_dssp CCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHH
T ss_pred cccccccccccccchhhhcccccccccccccccchhhccccccccchhhccccccccccccccccccccccccccccccc
Confidence 4556666666544221 12334556777777777665311 11222344567778888777654221 122
Q ss_pred CcCCCCccEEEcCCCcccccccccc-----cCCCcccEEEccCCccCCCchh----hhcccccccEEecCCccccCcch-
Q 036411 322 FMNLTHLSSLRLNNNHFSGKMADGL-----LSSTLLDVLDVSNNKLSGDIPH----WIGNFSVLWLLLMSENYLQGSIP- 391 (487)
Q Consensus 322 ~~~~~~L~~L~l~~~~~~~~~~~~~-----~~~~~L~~L~l~~~~~~~~~~~----~~~~~~~L~~L~l~~~~~~~~~~- 391 (487)
+...+.++.+++.+|.++......+ .....|+.+++++|.++..... .+..+++|++|++++|.+.+...
T Consensus 279 l~~~~~l~~l~l~~n~i~~~~~~~l~~~l~~~~~~L~~l~l~~~~l~~~~~~~l~~~~~~~~~L~~L~Ls~N~i~~~g~~ 358 (460)
T d1z7xw1 279 LRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVR 358 (460)
T ss_dssp HHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHH
T ss_pred ccccccccccccccccccccccchhhccccccccccccccccccchhhhhhhhcccccccccchhhhheeeecccCcccc
Confidence 3446677777777777653322211 2335677888877776544322 33445677777777777653222
Q ss_pred ---hhhc-cCcCCcEEeccCCcccc-----ccccccCCCcceEEEeeCcccCCcchHhh----h-ccCcceEEeCCCCcc
Q 036411 392 ---VQLG-NLESLEFIDISENGLSV-----SMVSLSNLSSVKHIYLHNNAINGLIPIAL----L-RSSTLLTLDLRDNKF 457 (487)
Q Consensus 392 ---~~~~-~~~~L~~l~l~~~~~~~-----~~~~~~~~~~L~~L~l~~~~~~~~~~~~~----~-~~~~L~~L~l~~~~~ 457 (487)
..+. ..+.|+.|++++|.++. ....+..+++|++|++++|+++......+ . +...|+.|++.++.+
T Consensus 359 ~l~~~l~~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~~l~~~l~~~~~~L~~l~l~~~~~ 438 (460)
T d1z7xw1 359 ELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGCLLEQLVLYDIYW 438 (460)
T ss_dssp HHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCCCCCEEECCSSSCCHHHHHHHHHHHTSTTCCCCEEECTTCCC
T ss_pred hhhhhhhcccCCCCEEECCCCCCChHHHHHHHHHHhcCCCCCEEECCCCcCCHHHHHHHHHHHHhCCCccCEEECCCCCC
Confidence 2222 34567777777777642 22334456777777777777764333222 1 224577777777776
Q ss_pred cccCcccc----cccCceeEE
Q 036411 458 FGRIPHQI----NELSNLHFL 474 (487)
Q Consensus 458 ~~~~~~~l----~~l~~L~~L 474 (487)
.....+.+ ...|+|+.|
T Consensus 439 ~~~~~~~l~~l~~~~~~l~~~ 459 (460)
T d1z7xw1 439 SEEMEDRLQALEKDKPSLRVI 459 (460)
T ss_dssp CHHHHHHHHHHHHHCTTSEEE
T ss_pred CHHHHHHHHHHHHhCCCCEEe
Confidence 43333322 345666554
|
| >d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin H species: Listeria monocytogenes [TaxId: 1639]
Probab=99.76 E-value=1.9e-17 Score=141.74 Aligned_cols=203 Identities=19% Similarity=0.320 Sum_probs=135.0
Q ss_pred EEccCCCCCCCcchhhhccccCcEEecccccCCCCCchhhhcCCCCCcEEECCCCccCCCCCcCCcCCCCccEEEcCCCc
Q 036411 258 LDVSKNSFEGNIPYSISEMKELITLDLSRNNFSGELPRSIFSSCLSLETLDLSNNNFYGQLFPNFMNLTHLSSLRLNNNH 337 (487)
Q Consensus 258 L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 337 (487)
++++.+.+++.. ....+.+|+.|++.+|.+. .++. ++.+++|++|++++|.+.+. ..+..+++++.+.+++|.
T Consensus 24 ~~l~~~~~~d~~--~~~~l~~L~~L~l~~~~i~-~l~~--l~~l~~L~~L~ls~n~i~~~--~~l~~l~~l~~l~~~~n~ 96 (227)
T d1h6ua2 24 IAAGKSNVTDTV--TQADLDGITTLSAFGTGVT-TIEG--VQYLNNLIGLELKDNQITDL--APLKNLTKITELELSGNP 96 (227)
T ss_dssp HHTTCSSTTSEE--CHHHHHTCCEEECTTSCCC-CCTT--GGGCTTCCEEECCSSCCCCC--GGGTTCCSCCEEECCSCC
T ss_pred HHhCCCCcCCcC--CHHHcCCcCEEECCCCCCC-cchh--HhcCCCCcEeecCCceeecc--cccccccccccccccccc
Confidence 344444444322 2345566677777777666 4532 46667777777777766542 235666777777777766
Q ss_pred ccccccccccCCCcccEEEccCCccCCCchhhhcccccccEEecCCccccCcchhhhccCcCCcEEeccCCccccccccc
Q 036411 338 FSGKMADGLLSSTLLDVLDVSNNKLSGDIPHWIGNFSVLWLLLMSENYLQGSIPVQLGNLESLEFIDISENGLSVSMVSL 417 (487)
Q Consensus 338 ~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~ 417 (487)
++. ...+..++.|+.++++++...+. ..+...+.++.+.++++.+... ..+..+++|+.|++++|.+.. ...+
T Consensus 97 ~~~--i~~l~~l~~L~~l~l~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~--~~~~~~~~L~~L~l~~n~~~~-~~~l 169 (227)
T d1h6ua2 97 LKN--VSAIAGLQSIKTLDLTSTQITDV--TPLAGLSNLQVLYLDLNQITNI--SPLAGLTNLQYLSIGNAQVSD-LTPL 169 (227)
T ss_dssp CSC--CGGGTTCTTCCEEECTTSCCCCC--GGGTTCTTCCEEECCSSCCCCC--GGGGGCTTCCEEECCSSCCCC-CGGG
T ss_pred ccc--ccccccccccccccccccccccc--chhccccchhhhhchhhhhchh--hhhcccccccccccccccccc-chhh
Confidence 642 22455677777777777766533 2355667777777777766532 235667788888888887753 3446
Q ss_pred cCCCcceEEEeeCcccCCcchHhhhccCcceEEeCCCCcccccCcccccccCceeEEeccC
Q 036411 418 SNLSSVKHIYLHNNAINGLIPIALLRSSTLLTLDLRDNKFFGRIPHQINELSNLHFLLLRG 478 (487)
Q Consensus 418 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~ 478 (487)
..+++|++|++++|++++.. .++.+++|+.|++++|++++. + .++++++|+.|++++
T Consensus 170 ~~l~~L~~L~Ls~n~l~~l~--~l~~l~~L~~L~Ls~N~lt~i-~-~l~~l~~L~~L~lsn 226 (227)
T d1h6ua2 170 ANLSKLTTLKADDNKISDIS--PLASLPNLIEVHLKNNQISDV-S-PLANTSNLFIVTLTN 226 (227)
T ss_dssp TTCTTCCEEECCSSCCCCCG--GGGGCTTCCEEECTTSCCCBC-G-GGTTCTTCCEEEEEE
T ss_pred cccccceecccCCCccCCCh--hhcCCCCCCEEECcCCcCCCC-c-ccccCCCCCEEEeeC
Confidence 77888999999888887653 377889999999999988753 3 378899999998863
|
| >d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin H species: Listeria monocytogenes [TaxId: 1639]
Probab=99.73 E-value=7.5e-17 Score=137.98 Aligned_cols=185 Identities=21% Similarity=0.312 Sum_probs=115.7
Q ss_pred CceEEEEccCCCCCCCcchhhhccccCcEEecccccCCCCCchhhhcCCCCCcEEECCCCccCCCCCcCCcCCCCccEEE
Q 036411 253 QKLIYLDVSKNSFEGNIPYSISEMKELITLDLSRNNFSGELPRSIFSSCLSLETLDLSNNNFYGQLFPNFMNLTHLSSLR 332 (487)
Q Consensus 253 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~ 332 (487)
.+|++|++.+|.++.. ..+..+++|+.|++++|.+. .+.. +..+++++.+++.+|.++. ...+..++.|+.+.
T Consensus 41 ~~L~~L~l~~~~i~~l--~~l~~l~~L~~L~ls~n~i~-~~~~--l~~l~~l~~l~~~~n~~~~--i~~l~~l~~L~~l~ 113 (227)
T d1h6ua2 41 DGITTLSAFGTGVTTI--EGVQYLNNLIGLELKDNQIT-DLAP--LKNLTKITELELSGNPLKN--VSAIAGLQSIKTLD 113 (227)
T ss_dssp HTCCEEECTTSCCCCC--TTGGGCTTCCEEECCSSCCC-CCGG--GTTCCSCCEEECCSCCCSC--CGGGTTCTTCCEEE
T ss_pred CCcCEEECCCCCCCcc--hhHhcCCCCcEeecCCceee-cccc--ccccccccccccccccccc--cccccccccccccc
Confidence 4566666666666532 24566667777777666665 3332 4566677777776666543 23455666677777
Q ss_pred cCCCcccccccccccCCCcccEEEccCCccCCCchhhhcccccccEEecCCccccCcchhhhccCcCCcEEeccCCcccc
Q 036411 333 LNNNHFSGKMADGLLSSTLLDVLDVSNNKLSGDIPHWIGNFSVLWLLLMSENYLQGSIPVQLGNLESLEFIDISENGLSV 412 (487)
Q Consensus 333 l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~ 412 (487)
+.++.... ...+...+.+..+.++++.+... ..+..+++|++|++++|.+... ..+.++++|+.|++++|+++.
T Consensus 114 l~~~~~~~--~~~~~~~~~~~~l~~~~~~~~~~--~~~~~~~~L~~L~l~~n~~~~~--~~l~~l~~L~~L~Ls~n~l~~ 187 (227)
T d1h6ua2 114 LTSTQITD--VTPLAGLSNLQVLYLDLNQITNI--SPLAGLTNLQYLSIGNAQVSDL--TPLANLSKLTTLKADDNKISD 187 (227)
T ss_dssp CTTSCCCC--CGGGTTCTTCCEEECCSSCCCCC--GGGGGCTTCCEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCCC
T ss_pred cccccccc--cchhccccchhhhhchhhhhchh--hhhccccccccccccccccccc--hhhcccccceecccCCCccCC
Confidence 76665532 22344556667777777665432 2355667777777777766532 235667777777777777653
Q ss_pred ccccccCCCcceEEEeeCcccCCcchHhhhccCcceEEeCC
Q 036411 413 SMVSLSNLSSVKHIYLHNNAINGLIPIALLRSSTLLTLDLR 453 (487)
Q Consensus 413 ~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~ 453 (487)
...+..+++|++|++++|++++..+ +.++++|+.|+++
T Consensus 188 -l~~l~~l~~L~~L~Ls~N~lt~i~~--l~~l~~L~~L~ls 225 (227)
T d1h6ua2 188 -ISPLASLPNLIEVHLKNNQISDVSP--LANTSNLFIVTLT 225 (227)
T ss_dssp -CGGGGGCTTCCEEECTTSCCCBCGG--GTTCTTCCEEEEE
T ss_pred -ChhhcCCCCCCEEECcCCcCCCCcc--cccCCCCCEEEee
Confidence 3446677778888887777776533 6677778877775
|
| >d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Follicle-stimulating hormone receptor species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.71 E-value=4.1e-17 Score=141.37 Aligned_cols=202 Identities=16% Similarity=0.155 Sum_probs=123.7
Q ss_pred cCcEEecccccCCCCCchhhhcCCCCCcEEECCCCccCCC-CCcCCcCCCCccEEEcCC-CcccccccccccCCCcccEE
Q 036411 278 ELITLDLSRNNFSGELPRSIFSSCLSLETLDLSNNNFYGQ-LFPNFMNLTHLSSLRLNN-NHFSGKMADGLLSSTLLDVL 355 (487)
Q Consensus 278 ~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~-~~~~~~~~~~L~~L~l~~-~~~~~~~~~~~~~~~~L~~L 355 (487)
++++|++++|.+. .++...|.++++|++|++++|.+.+. ....|..++.++++.+.. +.+....+..+..+++|+.+
T Consensus 30 ~l~~L~Ls~n~i~-~l~~~~f~~l~~L~~L~ls~n~~~~~i~~~~f~~l~~l~~l~~~~~n~l~~~~~~~~~~l~~L~~l 108 (242)
T d1xwdc1 30 NAIELRFVLTKLR-VIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYL 108 (242)
T ss_dssp CCSEEEEESCCCC-EECTTTTTTCTTCCEEEEESCTTCCEECSSSEESCTTCCEEEEECCTTCCEECTTSEECCTTCCEE
T ss_pred CCCEEECcCCcCC-ccChhHhhccchhhhhhhccccccceeecccccccccccccccccccccccccccccccccccccc
Confidence 4555555555554 55555555555666666655554332 223344555555555443 33444444555566666666
Q ss_pred EccCCccCCCch-hhhcccccccEEecCCccccCcchhhhccCc-CCcEEeccCCccccccccccCCCcceEEE-eeCcc
Q 036411 356 DVSNNKLSGDIP-HWIGNFSVLWLLLMSENYLQGSIPVQLGNLE-SLEFIDISENGLSVSMVSLSNLSSVKHIY-LHNNA 432 (487)
Q Consensus 356 ~l~~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~-~L~~l~l~~~~~~~~~~~~~~~~~L~~L~-l~~~~ 432 (487)
+++++.+....+ ..+..+..++.+...++.+....+..+..++ .++.+++++|++..........++++++. +.+|.
T Consensus 109 ~l~~~~l~~~~~~~~~~~l~~l~~~~~~n~~l~~i~~~~~~~~~~~l~~L~l~~n~l~~i~~~~~~~~~l~~~~~l~~n~ 188 (242)
T d1xwdc1 109 LISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNCAFNGTQLDELNLSDNNN 188 (242)
T ss_dssp EEESCCCCSCCCCTTTCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCCEECTTTTTTCCEEEEECTTCTT
T ss_pred ccchhhhcccccccccccccccccccccccccccccccccccccccceeeecccccccccccccccchhhhccccccccc
Confidence 666665543222 1223344444445555555544444555544 67888888888876655555666666665 46677
Q ss_pred cCCcchHhhhccCcceEEeCCCCcccccCcccccccCceeEEeccCCc
Q 036411 433 INGLIPIALLRSSTLLTLDLRDNKFFGRIPHQINELSNLHFLLLRGNS 480 (487)
Q Consensus 433 ~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~ 480 (487)
++...+..|..+++|+.|++++|+++...+..|.+++.|+.+++.+.+
T Consensus 189 l~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~l~~~~l~ 236 (242)
T d1xwdc1 189 LEELPNDVFHGASGPVILDISRTRIHSLPSYGLENLKKLRARSTYNLK 236 (242)
T ss_dssp CCCCCTTTTTTSCCCSEEECTTSCCCCCCSSSCTTCCEEESSSEESSS
T ss_pred cccccHHHhcCCCCCCEEECCCCcCCccCHHHHcCCcccccCcCCCCC
Confidence 887767778889999999999999876666678888888888776543
|
| >d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Leucine rich effector protein YopM domain: Leucine rich effector protein YopM species: Yersinia pestis [TaxId: 632]
Probab=99.70 E-value=3.3e-14 Score=130.27 Aligned_cols=70 Identities=19% Similarity=0.171 Sum_probs=47.1
Q ss_pred CcCCcEEeccCCccccccccccCCCcceEEEeeCcccCCcchHhhhccCcceEEeCCCCcccccCcccccccCceeEEec
Q 036411 397 LESLEFIDISENGLSVSMVSLSNLSSVKHIYLHNNAINGLIPIALLRSSTLLTLDLRDNKFFGRIPHQINELSNLHFLLL 476 (487)
Q Consensus 397 ~~~L~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l 476 (487)
+++|++|++++|+++..+. .+++|+.|++++|++++. +. .+++|+.|++++|+++ .+|+.. .+|+.|.+
T Consensus 283 ~~~L~~L~Ls~N~l~~lp~---~~~~L~~L~L~~N~L~~l-~~---~~~~L~~L~L~~N~L~-~lp~~~---~~L~~L~~ 351 (353)
T d1jl5a_ 283 PPSLEELNVSNNKLIELPA---LPPRLERLIASFNHLAEV-PE---LPQNLKQLHVEYNPLR-EFPDIP---ESVEDLRM 351 (353)
T ss_dssp CTTCCEEECCSSCCSCCCC---CCTTCCEEECCSSCCSCC-CC---CCTTCCEEECCSSCCS-SCCCCC---TTCCEEEC
T ss_pred CCCCCEEECCCCccCcccc---ccCCCCEEECCCCcCCcc-cc---ccCCCCEEECcCCcCC-CCCccc---cccCeeEC
Confidence 4677777777777764443 356788888888888754 32 2467889999999875 556532 35666665
Q ss_pred c
Q 036411 477 R 477 (487)
Q Consensus 477 ~ 477 (487)
.
T Consensus 352 ~ 352 (353)
T d1jl5a_ 352 N 352 (353)
T ss_dssp C
T ss_pred c
Confidence 4
|
| >d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin B species: Listeria monocytogenes [TaxId: 1639]
Probab=99.69 E-value=2.2e-16 Score=132.87 Aligned_cols=164 Identities=22% Similarity=0.276 Sum_probs=98.1
Q ss_pred CCCcEEECCCCccCCCCCcCCcCCCCccEEEcCCCcccccccccccCCCcccEEEccCCccCCCchhhhcccccccEEec
Q 036411 302 LSLETLDLSNNNFYGQLFPNFMNLTHLSSLRLNNNHFSGKMADGLLSSTLLDVLDVSNNKLSGDIPHWIGNFSVLWLLLM 381 (487)
Q Consensus 302 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l 381 (487)
.+|+.|++++|.+... ..+..+++|++|++++|.+++.. .+..+++|+.|++++|++++ ++ .+..+++|+.+++
T Consensus 46 ~~L~~L~l~~~~i~~l--~~l~~l~~L~~L~L~~n~i~~l~--~~~~l~~L~~L~l~~n~i~~-l~-~l~~l~~L~~L~l 119 (210)
T d1h6ta2 46 NSIDQIIANNSDIKSV--QGIQYLPNVTKLFLNGNKLTDIK--PLANLKNLGWLFLDENKVKD-LS-SLKDLKKLKSLSL 119 (210)
T ss_dssp HTCCEEECTTSCCCCC--TTGGGCTTCCEEECCSSCCCCCG--GGTTCTTCCEEECCSSCCCC-GG-GGTTCTTCCEEEC
T ss_pred cCccEEECcCCCCCCc--hhHhhCCCCCEEeCCCccccCcc--ccccCccccccccccccccc-cc-ccccccccccccc
Confidence 3445555555544321 22344555555555555544221 23445556666666665542 22 3555666666666
Q ss_pred CCccccCcchhhhccCcCCcEEeccCCccccccccccCCCcceEEEeeCcccCCcchHhhhccCcceEEeCCCCcccccC
Q 036411 382 SENYLQGSIPVQLGNLESLEFIDISENGLSVSMVSLSNLSSVKHIYLHNNAINGLIPIALLRSSTLLTLDLRDNKFFGRI 461 (487)
Q Consensus 382 ~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~ 461 (487)
++|.+.. ...+..+++++.+++++|.+. ....+..+++|+.+++++|.+++.. .+..+++|+.|++++|++++ +
T Consensus 120 ~~~~~~~--~~~l~~l~~l~~l~~~~n~l~-~~~~~~~l~~L~~l~l~~n~l~~i~--~l~~l~~L~~L~Ls~N~i~~-l 193 (210)
T d1h6ta2 120 EHNGISD--INGLVHLPQLESLYLGNNKIT-DITVLSRLTKLDTLSLEDNQISDIV--PLAGLTKLQNLYLSKNHISD-L 193 (210)
T ss_dssp TTSCCCC--CGGGGGCTTCCEEECCSSCCC-CCGGGGGCTTCSEEECCSSCCCCCG--GGTTCTTCCEEECCSSCCCB-C
T ss_pred ccccccc--ccccccccccccccccccccc-ccccccccccccccccccccccccc--cccCCCCCCEEECCCCCCCC-C
Confidence 6665542 234556677777777777765 2334556777888888888777643 36677888888888888753 3
Q ss_pred cccccccCceeEEeccC
Q 036411 462 PHQINELSNLHFLLLRG 478 (487)
Q Consensus 462 ~~~l~~l~~L~~L~l~~ 478 (487)
+ .+.++++|++|++++
T Consensus 194 ~-~l~~l~~L~~L~Ls~ 209 (210)
T d1h6ta2 194 R-ALAGLKNLDVLELFS 209 (210)
T ss_dssp G-GGTTCTTCSEEEEEE
T ss_pred h-hhcCCCCCCEEEccC
Confidence 3 578888888888764
|
| >d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin B species: Listeria monocytogenes [TaxId: 1639]
Probab=99.69 E-value=4.3e-16 Score=129.96 Aligned_cols=161 Identities=25% Similarity=0.292 Sum_probs=96.4
Q ss_pred CCCCcEEECCCCccCCCCCcCCcCCCCccEEEcCCCcccccccccccCCCcccEEEccCCccCCCchhhhcccccccEEe
Q 036411 301 CLSLETLDLSNNNFYGQLFPNFMNLTHLSSLRLNNNHFSGKMADGLLSSTLLDVLDVSNNKLSGDIPHWIGNFSVLWLLL 380 (487)
Q Consensus 301 ~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~ 380 (487)
+.++++|++++|.+... +.+..+++|++|++++|.+++.. .+..+++|+.|++++|.+... + .+..++.|++++
T Consensus 39 l~~l~~L~l~~~~i~~l--~~l~~l~nL~~L~Ls~N~l~~~~--~l~~l~~L~~L~l~~n~~~~~-~-~l~~l~~L~~L~ 112 (199)
T d2omxa2 39 LDQVTTLQADRLGIKSI--DGVEYLNNLTQINFSNNQLTDIT--PLKNLTKLVDILMNNNQIADI-T-PLANLTNLTGLT 112 (199)
T ss_dssp HTTCCEEECTTSCCCCC--TTGGGCTTCCEEECCSSCCCCCG--GGTTCTTCCEEECCSSCCCCC-G-GGTTCTTCSEEE
T ss_pred hcCCCEEECCCCCCCCc--cccccCCCcCcCccccccccCcc--cccCCcccccccccccccccc-c-cccccccccccc
Confidence 34455555555544321 23444555555555555554222 244555666666666655422 1 255666666666
Q ss_pred cCCccccCcchhhhccCcCCcEEeccCCccccccccccCCCcceEEEeeCcccCCcchHhhhccCcceEEeCCCCccccc
Q 036411 381 MSENYLQGSIPVQLGNLESLEFIDISENGLSVSMVSLSNLSSVKHIYLHNNAINGLIPIALLRSSTLLTLDLRDNKFFGR 460 (487)
Q Consensus 381 l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~ 460 (487)
++++..... ..+..+++|+.+++++|++.. .+.+..+++|++|++.+|++++.. .+..+++|+.|++++|++++
T Consensus 113 l~~~~~~~~--~~~~~l~~L~~L~l~~n~l~~-~~~l~~~~~L~~L~l~~n~l~~l~--~l~~l~~L~~L~ls~N~i~~- 186 (199)
T d2omxa2 113 LFNNQITDI--DPLKNLTNLNRLELSSNTISD-ISALSGLTSLQQLNFSSNQVTDLK--PLANLTTLERLDISSNKVSD- 186 (199)
T ss_dssp CCSSCCCCC--GGGTTCTTCSEEECCSSCCCC-CGGGTTCTTCSEEECCSSCCCCCG--GGTTCTTCCEEECCSSCCCC-
T ss_pred ccccccccc--cccchhhhhHHhhhhhhhhcc-cccccccccccccccccccccCCc--cccCCCCCCEEECCCCCCCC-
Confidence 666655422 235566777777777777653 345667778888888888777653 36677888888888888764
Q ss_pred CcccccccCceeEE
Q 036411 461 IPHQINELSNLHFL 474 (487)
Q Consensus 461 ~~~~l~~l~~L~~L 474 (487)
+ ..++.+++|++|
T Consensus 187 i-~~l~~L~~L~~L 199 (199)
T d2omxa2 187 I-SVLAKLTNLESL 199 (199)
T ss_dssp C-GGGGGCTTCSEE
T ss_pred C-ccccCCCCCCcC
Confidence 3 356778887765
|
| >d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Leucine rich effector protein YopM domain: Leucine rich effector protein YopM species: Yersinia pestis [TaxId: 632]
Probab=99.68 E-value=2.7e-14 Score=130.96 Aligned_cols=283 Identities=25% Similarity=0.301 Sum_probs=176.6
Q ss_pred CCCceeecccccccccccccccCCcccEEeCCCCcccCCcchHhhhcCCCCcEEEcccCCCCCCCCCCCCcCCCCCcEEE
Q 036411 155 YPLKVLQLSHCHLNVNSSFLLHQHHLKFLDLSHNQLVGNFPTWLLQNNTGLEVLILWNNSFSGILPRLPNAKYDKLRHLD 234 (487)
Q Consensus 155 ~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~ 234 (487)
++|++|+++++.++.++.. ..+|+.|++.++.++ .++. -.+.|++|++++|.+..... ...+++|+.++
T Consensus 58 ~~L~~L~Ls~N~l~~lp~~---~~~L~~L~l~~n~l~-~l~~----lp~~L~~L~L~~n~l~~lp~---~~~l~~L~~L~ 126 (353)
T d1jl5a_ 58 PHLESLVASCNSLTELPEL---PQSLKSLLVDNNNLK-ALSD----LPPLLEYLGVSNNQLEKLPE---LQNSSFLKIID 126 (353)
T ss_dssp TTCSEEECCSSCCSSCCCC---CTTCCEEECCSSCCS-CCCS----CCTTCCEEECCSSCCSSCCC---CTTCTTCCEEE
T ss_pred CCCCEEECCCCCCcccccc---hhhhhhhhhhhcccc-hhhh----hccccccccccccccccccc---hhhhccceeec
Confidence 4677777777777666654 356777788777765 3332 12467888888777665432 25567788888
Q ss_pred ccCCcccccCCcccccccCceEEEEccCCCCCCCcchhhhccccCcEEecccccCCCCCchhhhcCCCCCcEEECCCCcc
Q 036411 235 ISTNNFSGKLPENLGIVFQKLIYLDVSKNSFEGNIPYSISEMKELITLDLSRNNFSGELPRSIFSSCLSLETLDLSNNNF 314 (487)
Q Consensus 235 l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 314 (487)
+.++.+. ..+.. .+.+..+.+..+.... ...+..++.++.+.+.++... ..+.. ....+.+...++.+
T Consensus 127 l~~~~~~-~~~~~----~~~l~~l~~~~~~~~~--~~~l~~l~~l~~L~l~~n~~~-~~~~~----~~~~~~l~~~~~~~ 194 (353)
T d1jl5a_ 127 VDNNSLK-KLPDL----PPSLEFIAAGNNQLEE--LPELQNLPFLTAIYADNNSLK-KLPDL----PLSLESIVAGNNIL 194 (353)
T ss_dssp CCSSCCS-CCCCC----CTTCCEEECCSSCCSS--CCCCTTCTTCCEEECCSSCCS-SCCCC----CTTCCEEECCSSCC
T ss_pred ccccccc-ccccc----cccccchhhccccccc--cccccccccceeccccccccc-ccccc----cccccccccccccc
Confidence 8777655 22221 3456677776655432 234566777888888877765 33321 22345556555544
Q ss_pred CCCCCcCCcCCCCccEEEcCCCcccccccccccCCCcccEEEccCCccCCCchhhhcccccccEEecCCccccCcchhhh
Q 036411 315 YGQLFPNFMNLTHLSSLRLNNNHFSGKMADGLLSSTLLDVLDVSNNKLSGDIPHWIGNFSVLWLLLMSENYLQGSIPVQL 394 (487)
Q Consensus 315 ~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~ 394 (487)
.. ...+..++.++.+.++++.... .+ ....++..+.+..+.+... + .....+...++..+...+ +
T Consensus 195 ~~--~~~~~~l~~L~~l~l~~n~~~~-~~---~~~~~l~~~~~~~~~~~~~-~---~~~~~l~~~~~~~~~~~~-----l 259 (353)
T d1jl5a_ 195 EE--LPELQNLPFLTTIYADNNLLKT-LP---DLPPSLEALNVRDNYLTDL-P---ELPQSLTFLDVSENIFSG-----L 259 (353)
T ss_dssp SS--CCCCTTCTTCCEEECCSSCCSS-CC---SCCTTCCEEECCSSCCSCC-C---CCCTTCCEEECCSSCCSE-----E
T ss_pred cc--cccccccccccccccccccccc-cc---ccccccccccccccccccc-c---cccccccccccccccccc-----c
Confidence 32 2345667888888888876542 22 2345677777777766422 1 123445555555544331 1
Q ss_pred ccC-cCCcEEeccCCccccccccccCCCcceEEEeeCcccCCcchHhhhccCcceEEeCCCCcccccCcccccccCceeE
Q 036411 395 GNL-ESLEFIDISENGLSVSMVSLSNLSSVKHIYLHNNAINGLIPIALLRSSTLLTLDLRDNKFFGRIPHQINELSNLHF 473 (487)
Q Consensus 395 ~~~-~~L~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~ 473 (487)
..+ ......++..+.+.... ..+++|++|++++|+++.. |. .+++|+.|++++|+++ .+|+. +++|++
T Consensus 260 ~~l~~~~~~~~~~~~~~~~~~---~~~~~L~~L~Ls~N~l~~l-p~---~~~~L~~L~L~~N~L~-~l~~~---~~~L~~ 328 (353)
T d1jl5a_ 260 SELPPNLYYLNASSNEIRSLC---DLPPSLEELNVSNNKLIEL-PA---LPPRLERLIASFNHLA-EVPEL---PQNLKQ 328 (353)
T ss_dssp SCCCTTCCEEECCSSCCSEEC---CCCTTCCEEECCSSCCSCC-CC---CCTTCCEEECCSSCCS-CCCCC---CTTCCE
T ss_pred ccccchhcccccccCcccccc---ccCCCCCEEECCCCccCcc-cc---ccCCCCEEECCCCcCC-ccccc---cCCCCE
Confidence 111 23455666666654332 2468999999999999865 32 3578999999999986 46643 568999
Q ss_pred EeccCCccCCCCCC
Q 036411 474 LLLRGNSLQGRIPN 487 (487)
Q Consensus 474 L~l~~~~~~~~~p~ 487 (487)
|++++|++. ++|+
T Consensus 329 L~L~~N~L~-~lp~ 341 (353)
T d1jl5a_ 329 LHVEYNPLR-EFPD 341 (353)
T ss_dssp EECCSSCCS-SCCC
T ss_pred EECcCCcCC-CCCc
Confidence 999999976 6664
|
| >d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Follicle-stimulating hormone receptor species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.67 E-value=8.9e-17 Score=139.23 Aligned_cols=218 Identities=16% Similarity=0.094 Sum_probs=125.5
Q ss_pred EEEccCCcccccCCcccccccCceEEEEccCCCCCCCcchhhhccccCcEEecccccCCCCCchhhhcCCCCCcEEECCC
Q 036411 232 HLDISTNNFSGKLPENLGIVFQKLIYLDVSKNSFEGNIPYSISEMKELITLDLSRNNFSGELPRSIFSSCLSLETLDLSN 311 (487)
Q Consensus 232 ~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~ 311 (487)
.++..+..++ .+|..+ ++++++|++++|.++......|.++++|++|++++|.+.+.++...|.++++++++.+..
T Consensus 12 ~i~c~~~~l~-~iP~~l---~~~l~~L~Ls~n~i~~l~~~~f~~l~~L~~L~ls~n~~~~~i~~~~f~~l~~l~~l~~~~ 87 (242)
T d1xwdc1 12 VFLCQESKVT-EIPSDL---PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEK 87 (242)
T ss_dssp EEEEESCSCS-SCCSCS---CSCCSEEEEESCCCCEECTTTTTTCTTCCEEEEESCTTCCEECSSSEESCTTCCEEEEEC
T ss_pred EEEEeCCCCC-CcCCCC---CCCCCEEECcCCcCCccChhHhhccchhhhhhhccccccceeeccccccccccccccccc
Confidence 3444444443 444433 245666666666665433445666677777777776665445555566666777666554
Q ss_pred -CccCCCCCcCCcCCCCccEEEcCCCcccccccc-cccCCCcccEEEccCCccCCCchhhhcccc-cccEEecCCccccC
Q 036411 312 -NNFYGQLFPNFMNLTHLSSLRLNNNHFSGKMAD-GLLSSTLLDVLDVSNNKLSGDIPHWIGNFS-VLWLLLMSENYLQG 388 (487)
Q Consensus 312 -~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~-~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~-~L~~L~l~~~~~~~ 388 (487)
+.+....+..+..+++|+++.+.++.+...... .+.....+..+...++.+....+..+..++ .++.++++++++..
T Consensus 88 ~n~l~~~~~~~~~~l~~L~~l~l~~~~l~~~~~~~~~~~l~~l~~~~~~n~~l~~i~~~~~~~~~~~l~~L~l~~n~l~~ 167 (242)
T d1xwdc1 88 ANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQE 167 (242)
T ss_dssp CTTCCEECTTSEECCTTCCEEEEESCCCCSCCCCTTTCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCCE
T ss_pred cccccccccccccccccccccccchhhhcccccccccccccccccccccccccccccccccccccccceeeecccccccc
Confidence 334444445566667777777777665432221 122334444445555555444444555443 67777777777763
Q ss_pred cchhhhccCcCCcEE-eccCCcccccc-ccccCCCcceEEEeeCcccCCcchHhhhccCcceEEeCCC
Q 036411 389 SIPVQLGNLESLEFI-DISENGLSVSM-VSLSNLSSVKHIYLHNNAINGLIPIALLRSSTLLTLDLRD 454 (487)
Q Consensus 389 ~~~~~~~~~~~L~~l-~l~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~ 454 (487)
.....+ ..++++++ .+++|.++... ..+..+++|++|++++|+++...+..+.++++|+.+++.+
T Consensus 168 i~~~~~-~~~~l~~~~~l~~n~l~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~l~~~~ 234 (242)
T d1xwdc1 168 IHNCAF-NGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYGLENLKKLRARSTYN 234 (242)
T ss_dssp ECTTTT-TTCCEEEEECTTCTTCCCCCTTTTTTSCCCSEEECTTSCCCCCCSSSCTTCCEEESSSEES
T ss_pred cccccc-cchhhhccccccccccccccHHHhcCCCCCCEEECCCCcCCccCHHHHcCCcccccCcCCC
Confidence 333333 34454444 45666665443 3466788888888888888876666677777777666543
|
| >d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: Cyclin A/CDK2-associated p19, Skp2 domain: Cyclin A/CDK2-associated p19, Skp2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.67 E-value=9.3e-17 Score=141.99 Aligned_cols=244 Identities=19% Similarity=0.123 Sum_probs=135.5
Q ss_pred cEEecCCccccccccccccCCCCCcEEEccCccccCCcccccccCCCCCcEEECCCCccCCC-cchhccCCCCccEEecc
Q 036411 11 KILNLGFNFFIDSILPYLNTLTSLTTLNLRYNKIEGSRTKQGICNLKNLLELDLSSNNFEGH-LPQCLNNLTHLKVLDIS 89 (487)
Q Consensus 11 ~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~-~~~~~~~l~~L~~L~l~ 89 (487)
+.+|++++.+.......+.. .....+.+....... .........+|++|+++++.+... +...+.+|++|++|+++
T Consensus 3 ~~lDLs~~~l~~~~l~~l~~-~~~~~lrl~~~~~~~--~~~~~~~~~~L~~LdLs~~~i~~~~l~~l~~~c~~L~~L~L~ 79 (284)
T d2astb2 3 QTLDLTGKNLHPDVTGRLLS-QGVIAFRCPRSFMDQ--PLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLE 79 (284)
T ss_dssp SEEECTTCBCCHHHHHHHHH-TTCSEEECTTCEECS--CCCSCCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECT
T ss_pred CEEECCCCCCCchHHHHHHh-ccceEeecccccccc--chhhhccCCCCCEEECCCCccCHHHHHHHHHhCCCccccccc
Confidence 46888877654332222211 245566666655442 122234557899999999887643 34557789999999999
Q ss_pred CccccCCccccccCCCCCcEEeccccc-cCcchhHHHhhccccceEEEeccCCCccccccc--cccCCCCCceeeccccc
Q 036411 90 YNQLSGNFPSVLTNLTSLEYLDLSFID-FQGTFLINSLANHSKLEVLVLSSGNDMLQVKTE--NWLPTYPLKVLQLSHCH 166 (487)
Q Consensus 90 ~~~~~~~~~~~~~~~~~L~~L~l~~~~-~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~--~~~~~~~L~~L~l~~~~ 166 (487)
+|.+++..+..+..+++|++|++++|. ++..........+++|++|++++|..+...... ....++.|+++++.++.
T Consensus 80 ~~~l~~~~~~~l~~~~~L~~L~Ls~c~~itd~~l~~l~~~~~~L~~L~ls~c~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 159 (284)
T d2astb2 80 GLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYR 159 (284)
T ss_dssp TCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCG
T ss_pred ccCCCcHHHHHHhcCCCCcCccccccccccccccchhhHHHHhccccccccccccccccchhhhcccccccchhhhcccc
Confidence 998876677788889999999999864 554444455677888888888877655432211 11122345555555432
Q ss_pred ccccccccccCCcccEEeCCCCcccCCcchHhhhcCCCCcEEEcccCC-CCCCCCCCCCcCCCCCcEEEccCC-cccccC
Q 036411 167 LNVNSSFLLHQHHLKFLDLSHNQLVGNFPTWLLQNNTGLEVLILWNNS-FSGILPRLPNAKYDKLRHLDISTN-NFSGKL 244 (487)
Q Consensus 167 ~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~-~~~~~~~~~~~~~~~L~~L~l~~~-~~~~~~ 244 (487)
. .+++.....++..+++|++|++++|. +++.... ....+++|+.|++++| .+++..
T Consensus 160 ~---------------------~i~~~~l~~l~~~~~~L~~L~L~~~~~itd~~~~-~l~~~~~L~~L~L~~C~~i~~~~ 217 (284)
T d2astb2 160 K---------------------NLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQ-EFFQLNYLQHLSLSRCYDIIPET 217 (284)
T ss_dssp G---------------------GSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGG-GGGGCTTCCEEECTTCTTCCGGG
T ss_pred c---------------------ccccccccccccccccccccccccccCCCchhhh-hhcccCcCCEEECCCCCCCChHH
Confidence 1 11111122223344444444444432 2111111 2234556666666664 333333
Q ss_pred CcccccccCceEEEEccCCCCCCCcchhhhccccCc
Q 036411 245 PENLGIVFQKLIYLDVSKNSFEGNIPYSISEMKELI 280 (487)
Q Consensus 245 ~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~ 280 (487)
...+.. +++|++|+++++--.+........+|+|+
T Consensus 218 l~~L~~-~~~L~~L~l~~~~~d~~l~~l~~~lp~L~ 252 (284)
T d2astb2 218 LLELGE-IPTLKTLQVFGIVPDGTLQLLKEALPHLQ 252 (284)
T ss_dssp GGGGGG-CTTCCEEECTTSSCTTCHHHHHHHSTTSE
T ss_pred HHHHhc-CCCCCEEeeeCCCCHHHHHHHHHhCcccc
Confidence 333332 46777777777622222333334566654
|
| >d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: Cyclin A/CDK2-associated p19, Skp2 domain: Cyclin A/CDK2-associated p19, Skp2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.67 E-value=5.1e-17 Score=143.68 Aligned_cols=60 Identities=20% Similarity=0.182 Sum_probs=26.3
Q ss_pred cCcCCcEEeccCCcc-c-cccccccCCCcceEEEeeCc-ccCCcchHhhhccCcceEEeCCCC
Q 036411 396 NLESLEFIDISENGL-S-VSMVSLSNLSSVKHIYLHNN-AINGLIPIALLRSSTLLTLDLRDN 455 (487)
Q Consensus 396 ~~~~L~~l~l~~~~~-~-~~~~~~~~~~~L~~L~l~~~-~~~~~~~~~~~~~~~L~~L~l~~~ 455 (487)
.+|+|+.|++++|.. + .....+..+++|++|++++| .+++.....+..+++|+.|++++|
T Consensus 173 ~~~~L~~L~L~~~~~itd~~~~~l~~~~~L~~L~L~~C~~i~~~~l~~L~~~~~L~~L~l~~~ 235 (284)
T d2astb2 173 RCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI 235 (284)
T ss_dssp HCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS
T ss_pred ccccccccccccccCCCchhhhhhcccCcCCEEECCCCCCCChHHHHHHhcCCCCCEEeeeCC
Confidence 445555555554432 1 12233334455555555553 233333333444455555555554
|
| >d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin B species: Listeria monocytogenes [TaxId: 1639]
Probab=99.65 E-value=2.7e-15 Score=125.03 Aligned_cols=162 Identities=24% Similarity=0.342 Sum_probs=96.0
Q ss_pred ccccCcEEecccccCCCCCchhhhcCCCCCcEEECCCCccCCCCCcCCcCCCCccEEEcCCCcccccccccccCCCcccE
Q 036411 275 EMKELITLDLSRNNFSGELPRSIFSSCLSLETLDLSNNNFYGQLFPNFMNLTHLSSLRLNNNHFSGKMADGLLSSTLLDV 354 (487)
Q Consensus 275 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~ 354 (487)
.+++++.|+++++.+. .++. ++.+++|++|++++|.+.+. ..+..+++|+.|++.+|.+... ..+..++.|+.
T Consensus 38 ~l~~l~~L~l~~~~i~-~l~~--l~~l~nL~~L~Ls~N~l~~~--~~l~~l~~L~~L~l~~n~~~~~--~~l~~l~~L~~ 110 (199)
T d2omxa2 38 DLDQVTTLQADRLGIK-SIDG--VEYLNNLTQINFSNNQLTDI--TPLKNLTKLVDILMNNNQIADI--TPLANLTNLTG 110 (199)
T ss_dssp HHTTCCEEECTTSCCC-CCTT--GGGCTTCCEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCCCC--GGGTTCTTCSE
T ss_pred HhcCCCEEECCCCCCC-Cccc--cccCCCcCcCccccccccCc--ccccCCcccccccccccccccc--ccccccccccc
Confidence 3455666666666655 4432 34556666666666655432 2255566666666666655422 13455666666
Q ss_pred EEccCCccCCCchhhhcccccccEEecCCccccCcchhhhccCcCCcEEeccCCccccccccccCCCcceEEEeeCcccC
Q 036411 355 LDVSNNKLSGDIPHWIGNFSVLWLLLMSENYLQGSIPVQLGNLESLEFIDISENGLSVSMVSLSNLSSVKHIYLHNNAIN 434 (487)
Q Consensus 355 L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 434 (487)
++++++..... ..+..+++|+.+++++|.+.. . ..+..+++|+.|++.+|+++. ...+..+++|++|++++|+++
T Consensus 111 L~l~~~~~~~~--~~~~~l~~L~~L~l~~n~l~~-~-~~l~~~~~L~~L~l~~n~l~~-l~~l~~l~~L~~L~ls~N~i~ 185 (199)
T d2omxa2 111 LTLFNNQITDI--DPLKNLTNLNRLELSSNTISD-I-SALSGLTSLQQLNFSSNQVTD-LKPLANLTTLERLDISSNKVS 185 (199)
T ss_dssp EECCSSCCCCC--GGGTTCTTCSEEECCSSCCCC-C-GGGTTCTTCSEEECCSSCCCC-CGGGTTCTTCCEEECCSSCCC
T ss_pred ccccccccccc--cccchhhhhHHhhhhhhhhcc-c-ccccccccccccccccccccC-CccccCCCCCCEEECCCCCCC
Confidence 66666665432 235566777777777776642 2 245666777777777777653 334667777777777777776
Q ss_pred CcchHhhhccCcceEE
Q 036411 435 GLIPIALLRSSTLLTL 450 (487)
Q Consensus 435 ~~~~~~~~~~~~L~~L 450 (487)
+. + .++.+++|+.|
T Consensus 186 ~i-~-~l~~L~~L~~L 199 (199)
T d2omxa2 186 DI-S-VLAKLTNLESL 199 (199)
T ss_dssp CC-G-GGGGCTTCSEE
T ss_pred CC-c-cccCCCCCCcC
Confidence 54 2 35666777654
|
| >d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin B species: Listeria monocytogenes [TaxId: 1639]
Probab=99.64 E-value=4e-15 Score=125.07 Aligned_cols=164 Identities=21% Similarity=0.287 Sum_probs=82.8
Q ss_pred cccCcEEecccccCCCCCchhhhcCCCCCcEEECCCCccCCCCCcCCcCCCCccEEEcCCCcccccccccccCCCcccEE
Q 036411 276 MKELITLDLSRNNFSGELPRSIFSSCLSLETLDLSNNNFYGQLFPNFMNLTHLSSLRLNNNHFSGKMADGLLSSTLLDVL 355 (487)
Q Consensus 276 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L 355 (487)
+.+|+.|+++++.+. .++. ++.+++|++|++++|.+.+. ..+..+++|+.|++++|.++. .+ .+..+++|+.+
T Consensus 45 L~~L~~L~l~~~~i~-~l~~--l~~l~~L~~L~L~~n~i~~l--~~~~~l~~L~~L~l~~n~i~~-l~-~l~~l~~L~~L 117 (210)
T d1h6ta2 45 LNSIDQIIANNSDIK-SVQG--IQYLPNVTKLFLNGNKLTDI--KPLANLKNLGWLFLDENKVKD-LS-SLKDLKKLKSL 117 (210)
T ss_dssp HHTCCEEECTTSCCC-CCTT--GGGCTTCCEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCCC-GG-GGTTCTTCCEE
T ss_pred hcCccEEECcCCCCC-Cchh--HhhCCCCCEEeCCCccccCc--cccccCccccccccccccccc-cc-ccccccccccc
Confidence 344455555555444 3322 23445555555555544432 123444555555555555442 11 24445555555
Q ss_pred EccCCccCCCchhhhcccccccEEecCCccccCcchhhhccCcCCcEEeccCCccccccccccCCCcceEEEeeCcccCC
Q 036411 356 DVSNNKLSGDIPHWIGNFSVLWLLLMSENYLQGSIPVQLGNLESLEFIDISENGLSVSMVSLSNLSSVKHIYLHNNAING 435 (487)
Q Consensus 356 ~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~ 435 (487)
++++|.+.. ...+..++.++.++++++.+.+ +..+..+++|+.+++++|++... ..+..+++|++|++++|.+++
T Consensus 118 ~l~~~~~~~--~~~l~~l~~l~~l~~~~n~l~~--~~~~~~l~~L~~l~l~~n~l~~i-~~l~~l~~L~~L~Ls~N~i~~ 192 (210)
T d1h6ta2 118 SLEHNGISD--INGLVHLPQLESLYLGNNKITD--ITVLSRLTKLDTLSLEDNQISDI-VPLAGLTKLQNLYLSKNHISD 192 (210)
T ss_dssp ECTTSCCCC--CGGGGGCTTCCEEECCSSCCCC--CGGGGGCTTCSEEECCSSCCCCC-GGGTTCTTCCEEECCSSCCCB
T ss_pred ccccccccc--cccccccccccccccccccccc--ccccccccccccccccccccccc-ccccCCCCCCEEECCCCCCCC
Confidence 555555432 1234555555666665555542 22344556666666666665432 235566666666666666654
Q ss_pred cchHhhhccCcceEEeCC
Q 036411 436 LIPIALLRSSTLLTLDLR 453 (487)
Q Consensus 436 ~~~~~~~~~~~L~~L~l~ 453 (487)
. + .+..+++|+.|+|+
T Consensus 193 l-~-~l~~l~~L~~L~Ls 208 (210)
T d1h6ta2 193 L-R-ALAGLKNLDVLELF 208 (210)
T ss_dssp C-G-GGTTCTTCSEEEEE
T ss_pred C-h-hhcCCCCCCEEEcc
Confidence 3 2 35566666666665
|
| >d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Slit species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=99.60 E-value=5.2e-16 Score=128.65 Aligned_cols=126 Identities=23% Similarity=0.313 Sum_probs=59.1
Q ss_pred EEecccccCCCCCchhhhcCCCCCcEEECCCCccCC-CCCcCCcCCCCccEEEcCCCcccccccccccCCCcccEEEccC
Q 036411 281 TLDLSRNNFSGELPRSIFSSCLSLETLDLSNNNFYG-QLFPNFMNLTHLSSLRLNNNHFSGKMADGLLSSTLLDVLDVSN 359 (487)
Q Consensus 281 ~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~-~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~ 359 (487)
.++.+++.++ ++|..+ .+++++|++++|.++. .....|..+++|++|++++|.+.......+...++|++|++++
T Consensus 12 ~v~Cs~~~L~-~iP~~l---p~~l~~L~Ls~N~i~~~~~~~~f~~l~~L~~L~L~~N~i~~~~~~~~~~~~~L~~L~Ls~ 87 (192)
T d1w8aa_ 12 TVDCTGRGLK-EIPRDI---PLHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGE 87 (192)
T ss_dssp EEECTTSCCS-SCCSCC---CTTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCS
T ss_pred EEEEeCCCcC-ccCCCC---CCCCCEEEeCCCCCcccccccccCCCceEeeeeccccccccccccccccccccceeeecc
Confidence 4445555554 455433 2345555555555543 2223334444555555555444444444444444555555555
Q ss_pred CccCCCchhhhcccccccEEecCCccccCcchhhhccCcCCcEEeccCCcc
Q 036411 360 NKLSGDIPHWIGNFSVLWLLLMSENYLQGSIPVQLGNLESLEFIDISENGL 410 (487)
Q Consensus 360 ~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~ 410 (487)
|++....+..|.++++|++|++++|.++...+..|..+++|+++++++|++
T Consensus 88 N~l~~l~~~~F~~l~~L~~L~L~~N~l~~i~~~~f~~l~~L~~l~L~~N~~ 138 (192)
T d1w8aa_ 88 NKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPF 138 (192)
T ss_dssp CCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCB
T ss_pred ccccccCHHHHhCCCcccccccCCccccccCHHHhcCCccccccccccccc
Confidence 544433344444445555555555544433344444444444444444444
|
| >d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Slit species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=99.56 E-value=9.4e-15 Score=120.92 Aligned_cols=129 Identities=19% Similarity=0.302 Sum_probs=85.7
Q ss_pred cEEEccCCcccccCCcccccccCceEEEEccCCCCCC-CcchhhhccccCcEEecccccCCCCCchhhhcCCCCCcEEEC
Q 036411 231 RHLDISTNNFSGKLPENLGIVFQKLIYLDVSKNSFEG-NIPYSISEMKELITLDLSRNNFSGELPRSIFSSCLSLETLDL 309 (487)
Q Consensus 231 ~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~-~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l 309 (487)
+.++.+++.++ .+|..+ ++++++|++++|.+++ .....+..+++|+.|++++|.+. .++...|..+++|++|++
T Consensus 11 ~~v~Cs~~~L~-~iP~~l---p~~l~~L~Ls~N~i~~~~~~~~f~~l~~L~~L~L~~N~i~-~~~~~~~~~~~~L~~L~L 85 (192)
T d1w8aa_ 11 TTVDCTGRGLK-EIPRDI---PLHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLT-GIEPNAFEGASHIQELQL 85 (192)
T ss_dssp TEEECTTSCCS-SCCSCC---CTTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCC-CBCTTTTTTCTTCCEEEC
T ss_pred CEEEEeCCCcC-ccCCCC---CCCCCEEEeCCCCCcccccccccCCCceEeeeeccccccc-cccccccccccccceeee
Confidence 35555555555 455544 3567777777777754 33445666777777777777776 566666667777777777
Q ss_pred CCCccCCCCCcCCcCCCCccEEEcCCCcccccccccccCCCcccEEEccCCccCC
Q 036411 310 SNNNFYGQLFPNFMNLTHLSSLRLNNNHFSGKMADGLLSSTLLDVLDVSNNKLSG 364 (487)
Q Consensus 310 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~ 364 (487)
++|.+....+..|..+++|++|++++|.+++..+..|..+++|+++++++|.+..
T Consensus 86 s~N~l~~l~~~~F~~l~~L~~L~L~~N~l~~i~~~~f~~l~~L~~l~L~~N~~~~ 140 (192)
T d1w8aa_ 86 GENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNC 140 (192)
T ss_dssp CSCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCC
T ss_pred ccccccccCHHHHhCCCcccccccCCccccccCHHHhcCCccccccccccccccc
Confidence 7777766666667777777777777777776666666677777777777776653
|
| >d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: Rna1p (RanGAP1), N-terminal domain domain: Rna1p (RanGAP1), N-terminal domain species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]
Probab=99.53 E-value=5.9e-15 Score=134.64 Aligned_cols=185 Identities=21% Similarity=0.263 Sum_probs=106.1
Q ss_pred cCCCCCcEEECCCCccCCCCCc----CCcCCCCccEEEcCCCcccccccc-------------cccCCCcccEEEccCCc
Q 036411 299 SSCLSLETLDLSNNNFYGQLFP----NFMNLTHLSSLRLNNNHFSGKMAD-------------GLLSSTLLDVLDVSNNK 361 (487)
Q Consensus 299 ~~~~~L~~L~l~~~~~~~~~~~----~~~~~~~L~~L~l~~~~~~~~~~~-------------~~~~~~~L~~L~l~~~~ 361 (487)
..+++|+.|++++|.+...... .+...++|++|++++|.+...... .....+.|+.++++++.
T Consensus 90 ~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~~~~~~~~~~L~~l~l~~n~ 169 (344)
T d2ca6a1 90 LKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNR 169 (344)
T ss_dssp TTCTTCCEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSC
T ss_pred hhCCCcccccccccccccccccchhhhhcccccchheecccccccccccccccccccccccccccccCcccceeeccccc
Confidence 3455566666666655432211 223445666666666654321110 11234567777777776
Q ss_pred cCCC----chhhhcccccccEEecCCccccCc-----chhhhccCcCCcEEeccCCcccc-----ccccccCCCcceEEE
Q 036411 362 LSGD----IPHWIGNFSVLWLLLMSENYLQGS-----IPVQLGNLESLEFIDISENGLSV-----SMVSLSNLSSVKHIY 427 (487)
Q Consensus 362 ~~~~----~~~~~~~~~~L~~L~l~~~~~~~~-----~~~~~~~~~~L~~l~l~~~~~~~-----~~~~~~~~~~L~~L~ 427 (487)
+... +...+..++.+++|++++|.+... ....+..+++|+.|++++|.+.. ....+..+++|++|+
T Consensus 170 i~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~g~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~~L~~~l~~~~~L~~L~ 249 (344)
T d2ca6a1 170 LENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELG 249 (344)
T ss_dssp CTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEE
T ss_pred ccccccccccchhhhhhhhcccccccccccccccccchhhhhcchhhhcccccccccccccccccccccccccccchhhh
Confidence 6432 233345567777777777776532 12235567778888888777632 234445677788888
Q ss_pred eeCcccCCcchHh----hhc--cCcceEEeCCCCccccc----Cccccc-ccCceeEEeccCCccCC
Q 036411 428 LHNNAINGLIPIA----LLR--SSTLLTLDLRDNKFFGR----IPHQIN-ELSNLHFLLLRGNSLQG 483 (487)
Q Consensus 428 l~~~~~~~~~~~~----~~~--~~~L~~L~l~~~~~~~~----~~~~l~-~l~~L~~L~l~~~~~~~ 483 (487)
+++|.+++..... +.. .++|+.|++++|+++.. +...+. .+++|+.|++++|++..
T Consensus 250 Ls~n~i~~~g~~~l~~~l~~~~~~~L~~L~ls~N~i~~~~~~~l~~~l~~~~~~L~~L~l~~N~~~~ 316 (344)
T d2ca6a1 250 LNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSE 316 (344)
T ss_dssp CTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCT
T ss_pred hhcCccCchhhHHHHHHhhhccCCCCCEEECCCCcCChHHHHHHHHHHHccCCCCCEEECCCCcCCC
Confidence 8888776543222 222 35688888888877532 223332 56778888888887754
|
| >d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: U2A'-like domain: Splicesomal U2A' protein species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.50 E-value=2.1e-14 Score=114.48 Aligned_cols=127 Identities=17% Similarity=0.122 Sum_probs=84.5
Q ss_pred ccCCCcccEEEccCCccCCCchhhhcccccccEEecCCccccCcchhhhccCcCCcEEeccCCccccccccc-cCCCcce
Q 036411 346 LLSSTLLDVLDVSNNKLSGDIPHWIGNFSVLWLLLMSENYLQGSIPVQLGNLESLEFIDISENGLSVSMVSL-SNLSSVK 424 (487)
Q Consensus 346 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~-~~~~~L~ 424 (487)
+.++.++++|++++|+++. ++..+..+++|+.|++++|.+.. . +.+..+++|+.|++++|+++.....+ ..+++|+
T Consensus 14 ~~n~~~lr~L~L~~n~I~~-i~~~~~~l~~L~~L~Ls~N~i~~-l-~~~~~l~~L~~L~ls~N~i~~l~~~~~~~l~~L~ 90 (162)
T d1a9na_ 14 YTNAVRDRELDLRGYKIPV-IENLGATLDQFDAIDFSDNEIRK-L-DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLT 90 (162)
T ss_dssp EECTTSCEEEECTTSCCCS-CCCGGGGTTCCSEEECCSSCCCE-E-CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCC
T ss_pred ccCcCcCcEEECCCCCCCc-cCccccccccCCEEECCCCCCCc-c-CCcccCcchhhhhcccccccCCCccccccccccc
Confidence 3455667777777777663 34555666777777777777663 2 34667777777777777776554443 3677788
Q ss_pred EEEeeCcccCCcch-HhhhccCcceEEeCCCCcccccC---cccccccCceeEEe
Q 036411 425 HIYLHNNAINGLIP-IALLRSSTLLTLDLRDNKFFGRI---PHQINELSNLHFLL 475 (487)
Q Consensus 425 ~L~l~~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~~---~~~l~~l~~L~~L~ 475 (487)
.|++.+|++..... ..+..+++|+.|++++|+++... +..+..+|+|+.||
T Consensus 91 ~L~L~~N~i~~~~~l~~l~~l~~L~~L~l~~N~i~~~~~~r~~~i~~lp~L~~LD 145 (162)
T d1a9na_ 91 ELILTNNSLVELGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLD 145 (162)
T ss_dssp EEECCSCCCCCGGGGGGGGGCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEET
T ss_pred cceeccccccccccccccccccccchhhcCCCccccccchHHHHHHHCCCcCeeC
Confidence 88888887776533 45677788888888888775322 12567788888776
|
| >d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: U2A'-like domain: Splicesomal U2A' protein species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.50 E-value=3.7e-14 Score=113.03 Aligned_cols=131 Identities=18% Similarity=0.095 Sum_probs=102.2
Q ss_pred cccccccccEEecCCccccccccccccCCCCCcEEEccCccccCCcccccccCCCCCcEEECCCCccCCCcchhccCCCC
Q 036411 3 SFGSLKQLKILNLGFNFFIDSILPYLNTLTSLTTLNLRYNKIEGSRTKQGICNLKNLLELDLSSNNFEGHLPQCLNNLTH 82 (487)
Q Consensus 3 ~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~ 82 (487)
.|.+..++|+|++++|.+... +..+..+++|++|++++|.+... +.+..+++|++|++++|.+....+..+..+++
T Consensus 13 ~~~n~~~lr~L~L~~n~I~~i-~~~~~~l~~L~~L~Ls~N~i~~l---~~~~~l~~L~~L~ls~N~i~~l~~~~~~~l~~ 88 (162)
T d1a9na_ 13 QYTNAVRDRELDLRGYKIPVI-ENLGATLDQFDAIDFSDNEIRKL---DGFPLLRRLKTLLVNNNRICRIGEGLDQALPD 88 (162)
T ss_dssp EEECTTSCEEEECTTSCCCSC-CCGGGGTTCCSEEECCSSCCCEE---CCCCCCSSCCEEECCSSCCCEECSCHHHHCTT
T ss_pred hccCcCcCcEEECCCCCCCcc-CccccccccCCEEECCCCCCCcc---CCcccCcchhhhhcccccccCCCccccccccc
Confidence 466778899999999987655 55667889999999999988733 35888999999999999998555555678999
Q ss_pred ccEEeccCccccCCcc-ccccCCCCCcEEeccccccCcchh--HHHhhccccceEEEe
Q 036411 83 LKVLDISYNQLSGNFP-SVLTNLTSLEYLDLSFIDFQGTFL--INSLANHSKLEVLVL 137 (487)
Q Consensus 83 L~~L~l~~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~~~--~~~~~~~~~L~~l~l 137 (487)
|++|++++|.+..... ..+..+++|+++++++|.+..... ...++.+|+|+.|+.
T Consensus 89 L~~L~L~~N~i~~~~~l~~l~~l~~L~~L~l~~N~i~~~~~~r~~~i~~lp~L~~LD~ 146 (162)
T d1a9na_ 89 LTELILTNNSLVELGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLDF 146 (162)
T ss_dssp CCEEECCSCCCCCGGGGGGGGGCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEETT
T ss_pred cccceeccccccccccccccccccccchhhcCCCccccccchHHHHHHHCCCcCeeCC
Confidence 9999999998874322 467889999999999998754332 346778888888764
|
| >d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.46 E-value=2.5e-13 Score=102.71 Aligned_cols=118 Identities=22% Similarity=0.315 Sum_probs=84.4
Q ss_pred cEEEccCCccCCCchhhhcccccccEEecCCccccCcchhhhccCcCCcEEeccCCccccccccccCCCcceEEEeeCcc
Q 036411 353 DVLDVSNNKLSGDIPHWIGNFSVLWLLLMSENYLQGSIPVQLGNLESLEFIDISENGLSVSMVSLSNLSSVKHIYLHNNA 432 (487)
Q Consensus 353 ~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~ 432 (487)
+.|++++|+++.. + .+..+++|++|++++|.++ ..|..+..+++|+.|++++|.++.. +.+..+++|+.|++++|+
T Consensus 1 R~L~Ls~n~l~~l-~-~l~~l~~L~~L~ls~N~l~-~lp~~~~~l~~L~~L~l~~N~i~~l-~~~~~l~~L~~L~l~~N~ 76 (124)
T d1dcea3 1 RVLHLAHKDLTVL-C-HLEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALENV-DGVANLPRLQELLLCNNR 76 (124)
T ss_dssp SEEECTTSCCSSC-C-CGGGGTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCCC-GGGTTCSSCCEEECCSSC
T ss_pred CEEEcCCCCCCCC-c-ccccCCCCCEEECCCCccC-cchhhhhhhhccccccccccccccc-CccccccccCeEECCCCc
Confidence 4577777777633 3 3677778888888888776 4566677788888888888887644 456778888888888888
Q ss_pred cCCcch-HhhhccCcceEEeCCCCccccc---CcccccccCceeEE
Q 036411 433 INGLIP-IALLRSSTLLTLDLRDNKFFGR---IPHQINELSNLHFL 474 (487)
Q Consensus 433 ~~~~~~-~~~~~~~~L~~L~l~~~~~~~~---~~~~l~~l~~L~~L 474 (487)
+.+... ..+..+++|+.|++++|++++. .......+|+|+.|
T Consensus 77 i~~~~~~~~l~~~~~L~~L~l~~N~i~~~~~~~~~l~~~lp~L~~L 122 (124)
T d1dcea3 77 LQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSI 122 (124)
T ss_dssp CCSSSTTGGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCSEE
T ss_pred cCCCCCchhhcCCCCCCEEECCCCcCCcCccHHHHHHHHCcCcceE
Confidence 876543 4677788888888888887532 22344567887766
|
| >d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.41 E-value=4.9e-13 Score=101.05 Aligned_cols=103 Identities=22% Similarity=0.268 Sum_probs=89.6
Q ss_pred cEEecCCccccCcchhhhccCcCCcEEeccCCccccccccccCCCcceEEEeeCcccCCcchHhhhccCcceEEeCCCCc
Q 036411 377 WLLLMSENYLQGSIPVQLGNLESLEFIDISENGLSVSMVSLSNLSSVKHIYLHNNAINGLIPIALLRSSTLLTLDLRDNK 456 (487)
Q Consensus 377 ~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 456 (487)
+.|++++|+++ ..+ .+..+++|++|++++|+++..+..+..+++|+.|++++|.++.. + .+..+++|+.|++++|+
T Consensus 1 R~L~Ls~n~l~-~l~-~l~~l~~L~~L~ls~N~l~~lp~~~~~l~~L~~L~l~~N~i~~l-~-~~~~l~~L~~L~l~~N~ 76 (124)
T d1dcea3 1 RVLHLAHKDLT-VLC-HLEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALENV-D-GVANLPRLQELLLCNNR 76 (124)
T ss_dssp SEEECTTSCCS-SCC-CGGGGTTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSSCCCCC-G-GGTTCSSCCEEECCSSC
T ss_pred CEEEcCCCCCC-CCc-ccccCCCCCEEECCCCccCcchhhhhhhhccccccccccccccc-C-ccccccccCeEECCCCc
Confidence 57899999998 344 47889999999999999987777888999999999999999976 3 47889999999999999
Q ss_pred ccccC-cccccccCceeEEeccCCccCC
Q 036411 457 FFGRI-PHQINELSNLHFLLLRGNSLQG 483 (487)
Q Consensus 457 ~~~~~-~~~l~~l~~L~~L~l~~~~~~~ 483 (487)
+.... ...++.+++|++|++++|++.+
T Consensus 77 i~~~~~~~~l~~~~~L~~L~l~~N~i~~ 104 (124)
T d1dcea3 77 LQQSAAIQPLVSCPRLVLLNLQGNSLCQ 104 (124)
T ss_dssp CCSSSTTGGGGGCTTCCEEECTTSGGGG
T ss_pred cCCCCCchhhcCCCCCCEEECCCCcCCc
Confidence 97543 3578999999999999999874
|
| >d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: Rna1p (RanGAP1), N-terminal domain domain: Rna1p (RanGAP1), N-terminal domain species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]
Probab=99.41 E-value=1.9e-13 Score=124.52 Aligned_cols=189 Identities=19% Similarity=0.092 Sum_probs=95.1
Q ss_pred cccCCCCCcEEEccCccccCCc---ccccccCCCCCcEEECCCCccCCC----------cchhccCCCCccEEeccCccc
Q 036411 27 YLNTLTSLTTLNLRYNKIEGSR---TKQGICNLKNLLELDLSSNNFEGH----------LPQCLNNLTHLKVLDISYNQL 93 (487)
Q Consensus 27 ~~~~~~~L~~L~l~~~~~~~~~---~~~~~~~~~~L~~L~l~~~~~~~~----------~~~~~~~l~~L~~L~l~~~~~ 93 (487)
.+.....|+.|++++|.++... ....+...++|+.++++++..... +...+..+++|++|++++|.+
T Consensus 26 ~L~~~~~l~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~l~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~L~~L~L~~n~i 105 (344)
T d2ca6a1 26 VLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAF 105 (344)
T ss_dssp HHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCC
T ss_pred HHhhCCCCCEEECcCCcCCHHHHHHHHHHHHhCCCCCEEECCCCcccccccccchHHHHHHHHHhhCCCccccccccccc
Confidence 3455566666666666553211 112344556666666665533211 112234556666666666655
Q ss_pred cCC----ccccccCCCCCcEEeccccccCcchh------------HHHhhccccceEEEeccCCCcc---ccccccccCC
Q 036411 94 SGN----FPSVLTNLTSLEYLDLSFIDFQGTFL------------INSLANHSKLEVLVLSSGNDML---QVKTENWLPT 154 (487)
Q Consensus 94 ~~~----~~~~~~~~~~L~~L~l~~~~~~~~~~------------~~~~~~~~~L~~l~l~~~~~~~---~~~~~~~~~~ 154 (487)
... +...+..+++|++|++++|.+..... .......+.|+.+.++.+..-. ......+...
T Consensus 106 ~~~~~~~l~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~~~~~~~~~~L~~l~l~~n~i~~~~~~~l~~~l~~~ 185 (344)
T d2ca6a1 106 GPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSH 185 (344)
T ss_dssp CTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHHC
T ss_pred ccccccchhhhhcccccchheecccccccccccccccccccccccccccccCcccceeecccccccccccccccchhhhh
Confidence 432 22334455666666666665432110 0111344566666665432111 0111123345
Q ss_pred CCCceeecccccccc------cccccccCCcccEEeCCCCcccCCcchHh---hhcCCCCcEEEcccCCC
Q 036411 155 YPLKVLQLSHCHLNV------NSSFLLHQHHLKFLDLSHNQLVGNFPTWL---LQNNTGLEVLILWNNSF 215 (487)
Q Consensus 155 ~~L~~L~l~~~~~~~------~~~~~~~~~~L~~L~l~~~~~~~~~~~~~---~~~~~~L~~L~l~~~~~ 215 (487)
+.++.+++..|.++. +...+..+++|+.|++++|.+.+.....+ +..+++|++|.+++|.+
T Consensus 186 ~~L~~L~L~~n~i~~~g~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~~L~~~l~~~~~L~~L~Ls~n~i 255 (344)
T d2ca6a1 186 RLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLL 255 (344)
T ss_dssp TTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCC
T ss_pred hhhcccccccccccccccccchhhhhcchhhhcccccccccccccccccccccccccccchhhhhhcCcc
Confidence 577777777776632 23345667888888888887653322222 22445555555555443
|
| >d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: Outer arm dynein light chain 1 family: Outer arm dynein light chain 1 domain: Outer arm dynein light chain 1 species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]
Probab=99.35 E-value=3.5e-14 Score=117.45 Aligned_cols=133 Identities=21% Similarity=0.230 Sum_probs=82.7
Q ss_pred ccccCCCcccEEEccCCccCCCchhhhcccccccEEecCCccccCcchhhhccCcCCcEEeccCCccccccccccCCCcc
Q 036411 344 DGLLSSTLLDVLDVSNNKLSGDIPHWIGNFSVLWLLLMSENYLQGSIPVQLGNLESLEFIDISENGLSVSMVSLSNLSSV 423 (487)
Q Consensus 344 ~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~L 423 (487)
..+..+++|++|++++|+++.. + .+..+++|++|++++|.+. ..+..+..+++|+.|++++|+++.. ..+..+++|
T Consensus 42 ~sl~~L~~L~~L~Ls~n~I~~i-~-~l~~l~~L~~L~Ls~N~i~-~i~~~~~~~~~L~~L~l~~N~i~~l-~~~~~l~~L 117 (198)
T d1m9la_ 42 ATLSTLKACKHLALSTNNIEKI-S-SLSGMENLRILSLGRNLIK-KIENLDAVADTLEELWISYNQIASL-SGIEKLVNL 117 (198)
T ss_dssp HHHHHTTTCCEEECSEEEESCC-C-CHHHHTTCCEEECCEEEEC-SCSSHHHHHHHCCEEECSEEECCCH-HHHHHHHHS
T ss_pred hHHhcccccceeECcccCCCCc-c-cccCCccccChhhcccccc-ccccccccccccccccccccccccc-ccccccccc
Confidence 3445566666666666666532 2 3566667777777777665 3343344455677777777776532 345566777
Q ss_pred eEEEeeCcccCCcch-HhhhccCcceEEeCCCCcccccCcc----------cccccCceeEEeccCCccC
Q 036411 424 KHIYLHNNAINGLIP-IALLRSSTLLTLDLRDNKFFGRIPH----------QINELSNLHFLLLRGNSLQ 482 (487)
Q Consensus 424 ~~L~l~~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~~~~----------~l~~l~~L~~L~l~~~~~~ 482 (487)
+.|++++|+++.... ..+..+++|+.|++++|++....+. .+..+|+|+.|| +.+++
T Consensus 118 ~~L~L~~N~i~~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~~r~~vi~~lp~L~~LD--~~~I~ 185 (198)
T d1m9la_ 118 RVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD--GMPVD 185 (198)
T ss_dssp SEEEESEEECCCHHHHHHHTTTTTCSEEEECSSHHHHHHCTTTTHHHHHHHHHHHCSSCCEES--SGGGT
T ss_pred cccccccchhccccccccccCCCccceeecCCCccccCcccccchhhHHHHHHHHCCCcCEeC--CccCC
Confidence 777777777765432 4567777788888877776433222 256778888765 55554
|
| >d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: Outer arm dynein light chain 1 family: Outer arm dynein light chain 1 domain: Outer arm dynein light chain 1 species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]
Probab=99.21 E-value=4.1e-13 Score=110.88 Aligned_cols=130 Identities=18% Similarity=0.225 Sum_probs=102.9
Q ss_pred cccEEEccCC-ccCCCchhhhcccccccEEecCCccccCcchhhhccCcCCcEEeccCCccccccccccCCCcceEEEee
Q 036411 351 LLDVLDVSNN-KLSGDIPHWIGNFSVLWLLLMSENYLQGSIPVQLGNLESLEFIDISENGLSVSMVSLSNLSSVKHIYLH 429 (487)
Q Consensus 351 ~L~~L~l~~~-~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~L~~L~l~ 429 (487)
..+.+++.+. .-...++..+..+++|++|++++|.++. .+ .+..+++|+.|++++|.++........+++|+.|+++
T Consensus 24 ~~~~~~l~~~~~~i~~l~~sl~~L~~L~~L~Ls~n~I~~-i~-~l~~l~~L~~L~Ls~N~i~~i~~~~~~~~~L~~L~l~ 101 (198)
T d1m9la_ 24 EAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIKKIENLDAVADTLEELWIS 101 (198)
T ss_dssp TCSCEECCBCCTTCCCCHHHHHHTTTCCEEECSEEEESC-CC-CHHHHTTCCEEECCEEEECSCSSHHHHHHHCCEEECS
T ss_pred ccceeeeecccCchhhhhhHHhcccccceeECcccCCCC-cc-cccCCccccChhhcccccccccccccccccccccccc
Confidence 3455666543 1123567789999999999999999984 33 5788999999999999987655545566889999999
Q ss_pred CcccCCcchHhhhccCcceEEeCCCCcccccCc-ccccccCceeEEeccCCccCCC
Q 036411 430 NNAINGLIPIALLRSSTLLTLDLRDNKFFGRIP-HQINELSNLHFLLLRGNSLQGR 484 (487)
Q Consensus 430 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~-~~l~~l~~L~~L~l~~~~~~~~ 484 (487)
+|.++.. ..+..+++|+.|++++|.++.... ..+..+++|+.|++++||+...
T Consensus 102 ~N~i~~l--~~~~~l~~L~~L~L~~N~i~~~~~~~~l~~l~~L~~L~L~~N~l~~~ 155 (198)
T d1m9la_ 102 YNQIASL--SGIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYND 155 (198)
T ss_dssp EEECCCH--HHHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSSHHHHH
T ss_pred ccccccc--ccccccccccccccccchhccccccccccCCCccceeecCCCccccC
Confidence 9999865 357788999999999999864322 4689999999999999997543
|
| >d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: High affinity nerve growth factor receptor, N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.15 E-value=9e-11 Score=92.40 Aligned_cols=125 Identities=15% Similarity=0.021 Sum_probs=59.4
Q ss_pred cccCCCcccEEEccCCc-cCCCchhhhcccccccEEecCCccccCcchhhhccCcCCcEEeccCCccccccccccCCCcc
Q 036411 345 GLLSSTLLDVLDVSNNK-LSGDIPHWIGNFSVLWLLLMSENYLQGSIPVQLGNLESLEFIDISENGLSVSMVSLSNLSSV 423 (487)
Q Consensus 345 ~~~~~~~L~~L~l~~~~-~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~L 423 (487)
.+...++|++|++.+++ ++...+..|.++++|+.|++++|+++...+..|..+++|+.|+|++|+++...........|
T Consensus 26 ~l~~l~~l~~L~l~~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~~~l 105 (156)
T d2ifga3 26 HLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALESLSWKTVQGLSL 105 (156)
T ss_dssp TSCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSCCSCCCSTTTCSCCC
T ss_pred cccCccccCeeecCCCccccccCchhhccccccCcceeeccccCCcccccccccccccceeccCCCCcccChhhhccccc
Confidence 33444455555554432 43333444555555555555555555444455555555566666665555444443333456
Q ss_pred eEEEeeCcccCCc-chHhhhccCcceEEeCCCCcccccCcccccccC
Q 036411 424 KHIYLHNNAINGL-IPIALLRSSTLLTLDLRDNKFFGRIPHQINELS 469 (487)
Q Consensus 424 ~~L~l~~~~~~~~-~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~ 469 (487)
+.|++++|.+.-. .-.++..+.......+...++.+..|..+.++|
T Consensus 106 ~~L~L~~Np~~C~C~~~~l~~~~~~~~~~~~~~~~~C~~p~~l~~~p 152 (156)
T d2ifga3 106 QELVLSGNPLHCSCALRWLQRWEEEGLGGVPEQKLQCHGQGPLAHMP 152 (156)
T ss_dssp CEEECCSSCCCCCGGGHHHHHHHHTTCSSCGGGCCCCSSSSCSSCCC
T ss_pred cccccCCCcccCCchHHHHHHHHHhccCccCcCCcEECcChHHCcCC
Confidence 6666666655421 111222221122223334455555555555555
|
| >d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: High affinity nerve growth factor receptor, N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.14 E-value=9.3e-11 Score=92.32 Aligned_cols=108 Identities=19% Similarity=0.123 Sum_probs=75.5
Q ss_pred CCcccEEEccCCccCCCchhhhcccccccEEecCCcc-ccCcchhhhccCcCCcEEeccCCccccc-cccccCCCcceEE
Q 036411 349 STLLDVLDVSNNKLSGDIPHWIGNFSVLWLLLMSENY-LQGSIPVQLGNLESLEFIDISENGLSVS-MVSLSNLSSVKHI 426 (487)
Q Consensus 349 ~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~-~~~~~~~~~~~~~~L~~l~l~~~~~~~~-~~~~~~~~~L~~L 426 (487)
+...+.++.+++.+. ..|..+..+++|++|++++++ ++...+..|..+++|+.|++++|+++.. ...|..+++|++|
T Consensus 7 c~~~~~l~c~~~~~~-~~p~~l~~l~~l~~L~l~~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L 85 (156)
T d2ifga3 7 PHGSSGLRCTRDGAL-DSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRL 85 (156)
T ss_dssp CSSSSCEECCSSCCC-TTTTTSCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEE
T ss_pred cCCCCeEEecCCCCc-cCcccccCccccCeeecCCCccccccCchhhccccccCcceeeccccCCcccccccccccccce
Confidence 334556777777665 456667777888888886653 6655566677788888888888887654 3446677888888
Q ss_pred EeeCcccCCcchHhhhccCcceEEeCCCCccc
Q 036411 427 YLHNNAINGLIPIALLRSSTLLTLDLRDNKFF 458 (487)
Q Consensus 427 ~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 458 (487)
++++|+++...+.++.. .+|+.|+|++|++.
T Consensus 86 ~Ls~N~l~~l~~~~~~~-~~l~~L~L~~Np~~ 116 (156)
T d2ifga3 86 NLSFNALESLSWKTVQG-LSLQELVLSGNPLH 116 (156)
T ss_dssp ECCSSCCSCCCSTTTCS-CCCCEEECCSSCCC
T ss_pred eccCCCCcccChhhhcc-ccccccccCCCccc
Confidence 88888887766666654 36788888888774
|
| >d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: mRNA export factor tap domain: mRNA export factor tap species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.29 E-value=2.7e-08 Score=78.51 Aligned_cols=88 Identities=18% Similarity=0.175 Sum_probs=59.0
Q ss_pred hhhccCcCCcEEeccCCccccc---cccccCCCcceEEEeeCcccCCcchHhhhccCcceEEeCCCCcccccCcc-----
Q 036411 392 VQLGNLESLEFIDISENGLSVS---MVSLSNLSSVKHIYLHNNAINGLIPIALLRSSTLLTLDLRDNKFFGRIPH----- 463 (487)
Q Consensus 392 ~~~~~~~~L~~l~l~~~~~~~~---~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~----- 463 (487)
..+..+++|+.|++++|+++.. ...+..+++|+.|++++|.+++..+..+.....|+.|++++|++.....+
T Consensus 59 ~~~~~~~~L~~L~Ls~N~i~~l~~~~~~~~~l~~L~~L~Ls~N~i~~l~~l~~l~~~~L~~L~L~~Npl~~~~~~~~~y~ 138 (162)
T d1koha1 59 IIEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGNSLSDTFRDQSTYI 138 (162)
T ss_dssp HHHHHCTTCCCCCCCSSCCCCCSGGGTHHHHSTTCCCCCCTTSCCCCGGGHHHHTTCCCSSCCCTTSTTSSSSSSHHHHH
T ss_pred HHHHhCCCCCEeeCCCccccCCchhHHHHhhCCcccccccccCccccchhhhhhhccccceeecCCCCcCcCcccchhHH
Confidence 3345677788888888877533 22344678888888888888876554444456788888888888654332
Q ss_pred --cccccCceeEEeccCCcc
Q 036411 464 --QINELSNLHFLLLRGNSL 481 (487)
Q Consensus 464 --~l~~l~~L~~L~l~~~~~ 481 (487)
.+..+|+|+.|| |.++
T Consensus 139 ~~i~~~~P~L~~LD--g~~v 156 (162)
T d1koha1 139 SAIRERFPKLLRLD--GHEL 156 (162)
T ss_dssp HHHHTTSTTCCEET--TEEC
T ss_pred HHHHHHCCCCCEEC--cCCC
Confidence 356788888775 4443
|
| >d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: mRNA export factor tap domain: mRNA export factor tap species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.11 E-value=1.2e-07 Score=74.55 Aligned_cols=123 Identities=24% Similarity=0.099 Sum_probs=80.5
Q ss_pred cccEEecCCccccccccccccCCCCCcEEEccCccccCCcccccccCCCCCcEEECCCCccCCCc--chhccCCCCccEE
Q 036411 9 QLKILNLGFNFFIDSILPYLNTLTSLTTLNLRYNKIEGSRTKQGICNLKNLLELDLSSNNFEGHL--PQCLNNLTHLKVL 86 (487)
Q Consensus 9 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~--~~~~~~l~~L~~L 86 (487)
..+.|++++.... ..+.....+..++..++... .....+.++++|++|++++|++++.. +..+..+++|+.|
T Consensus 23 ~~~~Ldls~l~~~----~~l~~~~~~~~l~~~~~~~~--~l~~~~~~~~~L~~L~Ls~N~i~~l~~~~~~~~~l~~L~~L 96 (162)
T d1koha1 23 SQQALDLKGLRSD----PDLVAQNIDVVLNRRSSMAA--TLRIIEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKIL 96 (162)
T ss_dssp SSCCBCCCCCSSC----TTTTTTTCCCCTTSHHHHHH--HHHHHHHHCTTCCCCCCCSSCCCCCSGGGTHHHHSTTCCCC
T ss_pred hhCeeecccCCCC----chhhhccchhhcchhhhHhh--hhHHHHHhCCCCCEeeCCCccccCCchhHHHHhhCCccccc
Confidence 3455666554321 12333444444544444332 22334567899999999999997542 3456789999999
Q ss_pred eccCccccCCccccccCCCCCcEEeccccccCcch------hHHHhhccccceEEEe
Q 036411 87 DISYNQLSGNFPSVLTNLTSLEYLDLSFIDFQGTF------LINSLANHSKLEVLVL 137 (487)
Q Consensus 87 ~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~------~~~~~~~~~~L~~l~l 137 (487)
++++|.++...+-.+....+|+.+++++|.+.... ....+..+|+|+.|+-
T Consensus 97 ~Ls~N~i~~l~~l~~l~~~~L~~L~L~~Npl~~~~~~~~~y~~~i~~~~P~L~~LDg 153 (162)
T d1koha1 97 NLSGNELKSERELDKIKGLKLEELWLDGNSLSDTFRDQSTYISAIRERFPKLLRLDG 153 (162)
T ss_dssp CCTTSCCCCGGGHHHHTTCCCSSCCCTTSTTSSSSSSHHHHHHHHHTTSTTCCEETT
T ss_pred ccccCccccchhhhhhhccccceeecCCCCcCcCcccchhHHHHHHHHCCCCCEECc
Confidence 99999988544334445667999999999876432 2356788999998863
|
| >d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: 28-residue LRR domain: Tropomodulin C-terminal domain species: nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=98.07 E-value=1.8e-06 Score=68.12 Aligned_cols=108 Identities=17% Similarity=0.133 Sum_probs=53.5
Q ss_pred CCCcccEEEccCCc-cCCC----chhhhcccccccEEecCCccccCcc----hhhhccCcCCcEEeccCCccc-----cc
Q 036411 348 SSTLLDVLDVSNNK-LSGD----IPHWIGNFSVLWLLLMSENYLQGSI----PVQLGNLESLEFIDISENGLS-----VS 413 (487)
Q Consensus 348 ~~~~L~~L~l~~~~-~~~~----~~~~~~~~~~L~~L~l~~~~~~~~~----~~~~~~~~~L~~l~l~~~~~~-----~~ 413 (487)
+.+.|++|++++++ +... +...+...+.|++|++++|.+.... ...+...++|+.|++++|.+. ..
T Consensus 13 n~~~L~~L~L~~~~~i~~~~~~~l~~~L~~n~~L~~L~Ls~n~l~~~~~~~la~~L~~n~~L~~L~L~~n~i~~~g~~~l 92 (167)
T d1pgva_ 13 DDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARL 92 (167)
T ss_dssp TCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHH
T ss_pred CCCCCcEEEeCCCCCCCHHHHHHHHHHHhhCCccceeeccccccchhHHHHHhhhhhhcccccceeeehhhcchHHHHHH
Confidence 45667777776643 3321 2234445566666666666554321 123344556666666666553 12
Q ss_pred cccccCCCcceEEEeeCcccCCc-------chHhhhccCcceEEeCCCC
Q 036411 414 MVSLSNLSSVKHIYLHNNAINGL-------IPIALLRSSTLLTLDLRDN 455 (487)
Q Consensus 414 ~~~~~~~~~L~~L~l~~~~~~~~-------~~~~~~~~~~L~~L~l~~~ 455 (487)
...+...+.|++|++.+|.+... +..++...++|+.|+++.+
T Consensus 93 ~~aL~~n~sL~~L~l~~n~~~~~g~~~~~~l~~~L~~n~sL~~l~l~~~ 141 (167)
T d1pgva_ 93 LRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFA 141 (167)
T ss_dssp HHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCC
T ss_pred HHHHHhCCcCCEEECCCCcCCCccHHHHHHHHHHHHhCCCccEeeCcCC
Confidence 22333445566666655543322 1223334455555555544
|
| >d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: 28-residue LRR domain: Tropomodulin C-terminal domain species: nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=98.03 E-value=6.6e-06 Score=64.70 Aligned_cols=108 Identities=9% Similarity=0.044 Sum_probs=54.3
Q ss_pred ccccccEEecCCc-cccCc----chhhhccCcCCcEEeccCCccc-----cccccccCCCcceEEEeeCcccCCcc----
Q 036411 372 NFSVLWLLLMSEN-YLQGS----IPVQLGNLESLEFIDISENGLS-----VSMVSLSNLSSVKHIYLHNNAINGLI---- 437 (487)
Q Consensus 372 ~~~~L~~L~l~~~-~~~~~----~~~~~~~~~~L~~l~l~~~~~~-----~~~~~~~~~~~L~~L~l~~~~~~~~~---- 437 (487)
+.+.|++|+++++ .+... +...+...++|++|++++|.+. .....+...+.|++|++++|.++...
T Consensus 13 n~~~L~~L~L~~~~~i~~~~~~~l~~~L~~n~~L~~L~Ls~n~l~~~~~~~la~~L~~n~~L~~L~L~~n~i~~~g~~~l 92 (167)
T d1pgva_ 13 DDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARL 92 (167)
T ss_dssp TCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHH
T ss_pred CCCCCcEEEeCCCCCCCHHHHHHHHHHHhhCCccceeeccccccchhHHHHHhhhhhhcccccceeeehhhcchHHHHHH
Confidence 4466666666653 23321 1123444556666666666553 11222234456666666666655422
Q ss_pred hHhhhccCcceEEeCCCCccccc-------CcccccccCceeEEeccCC
Q 036411 438 PIALLRSSTLLTLDLRDNKFFGR-------IPHQINELSNLHFLLLRGN 479 (487)
Q Consensus 438 ~~~~~~~~~L~~L~l~~~~~~~~-------~~~~l~~l~~L~~L~l~~~ 479 (487)
..++...++|+.|++++|.+... +.+++...++|+.|+++.+
T Consensus 93 ~~aL~~n~sL~~L~l~~n~~~~~g~~~~~~l~~~L~~n~sL~~l~l~~~ 141 (167)
T d1pgva_ 93 LRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFA 141 (167)
T ss_dssp HHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCC
T ss_pred HHHHHhCCcCCEEECCCCcCCCccHHHHHHHHHHHHhCCCccEeeCcCC
Confidence 22344456666666666543211 2334445566666666554
|
| >d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: 28-residue LRR domain: Tropomodulin C-terminal domain species: Chicken (Gallus gallus) [TaxId: 9031]
Probab=97.61 E-value=1.7e-05 Score=62.29 Aligned_cols=111 Identities=12% Similarity=0.122 Sum_probs=56.8
Q ss_pred ccCCCcccEEEccCC-ccCCC----chhhhcccccccEEecCCccccCcch----hhhccCcCCcEEeccCCccc-----
Q 036411 346 LLSSTLLDVLDVSNN-KLSGD----IPHWIGNFSVLWLLLMSENYLQGSIP----VQLGNLESLEFIDISENGLS----- 411 (487)
Q Consensus 346 ~~~~~~L~~L~l~~~-~~~~~----~~~~~~~~~~L~~L~l~~~~~~~~~~----~~~~~~~~L~~l~l~~~~~~----- 411 (487)
....+.|++|+++++ .++.. +...+..++.|++|++++|.+..... ..+...++++.+++++|.+.
T Consensus 13 ~~~~~~L~~L~L~~~~~i~~~~~~~l~~al~~n~~L~~L~Ls~n~l~~~~~~~L~~~l~~~~~l~~l~l~~~~~~~~g~~ 92 (166)
T d1io0a_ 13 QNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGIL 92 (166)
T ss_dssp HTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHH
T ss_pred HhcCCCCcEEEcCCCCCCCHHHHHHHHHHHhcCCccCeeeccCCcccHHHHHHHHHHHhhcccchhhhhccccccchhHH
Confidence 345567777777763 34322 23344456667777777776543222 22344566666666666542
Q ss_pred cccccccCCCcceEEEee--CcccCCc----chHhhhccCcceEEeCCCCc
Q 036411 412 VSMVSLSNLSSVKHIYLH--NNAINGL----IPIALLRSSTLLTLDLRDNK 456 (487)
Q Consensus 412 ~~~~~~~~~~~L~~L~l~--~~~~~~~----~~~~~~~~~~L~~L~l~~~~ 456 (487)
.....+...++|+.+++. +|.+... +..++..+++|+.|+++.+.
T Consensus 93 ~l~~~l~~~~~L~~l~L~l~~n~i~~~~~~~La~~L~~n~~L~~L~l~~~~ 143 (166)
T d1io0a_ 93 ALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQ 143 (166)
T ss_dssp HHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSS
T ss_pred HHHHHHHhCccccEEeeccCCCcCcHHHHHHHHHHHHhCCCcCEEeCcCCC
Confidence 233333445556655443 3334321 22333455666666665544
|
| >d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: 28-residue LRR domain: Tropomodulin C-terminal domain species: Chicken (Gallus gallus) [TaxId: 9031]
Probab=97.52 E-value=4.6e-05 Score=59.71 Aligned_cols=109 Identities=14% Similarity=0.056 Sum_probs=51.5
Q ss_pred cccccccEEecCCc-cccCcc----hhhhccCcCCcEEeccCCccc-----cccccccCCCcceEEEeeCcccCCcc---
Q 036411 371 GNFSVLWLLLMSEN-YLQGSI----PVQLGNLESLEFIDISENGLS-----VSMVSLSNLSSVKHIYLHNNAINGLI--- 437 (487)
Q Consensus 371 ~~~~~L~~L~l~~~-~~~~~~----~~~~~~~~~L~~l~l~~~~~~-----~~~~~~~~~~~L~~L~l~~~~~~~~~--- 437 (487)
.+.+.|++|+++++ .++... ...+...++|+.|++++|.+. .....+...+.++.+++++|.+....
T Consensus 14 ~~~~~L~~L~L~~~~~i~~~~~~~l~~al~~n~~L~~L~Ls~n~l~~~~~~~L~~~l~~~~~l~~l~l~~~~~~~~g~~~ 93 (166)
T d1io0a_ 14 NNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILA 93 (166)
T ss_dssp TTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHH
T ss_pred hcCCCCcEEEcCCCCCCCHHHHHHHHHHHhcCCccCeeeccCCcccHHHHHHHHHHHhhcccchhhhhccccccchhHHH
Confidence 44556666666652 333211 122334556666666666542 12222234455666666666554321
Q ss_pred -hHhhhccCcceEEeCC--CCcccc----cCcccccccCceeEEeccCC
Q 036411 438 -PIALLRSSTLLTLDLR--DNKFFG----RIPHQINELSNLHFLLLRGN 479 (487)
Q Consensus 438 -~~~~~~~~~L~~L~l~--~~~~~~----~~~~~l~~l~~L~~L~l~~~ 479 (487)
..++...++|+.++|+ +|++.+ .+.+.+...++|+.|+++.+
T Consensus 94 l~~~l~~~~~L~~l~L~l~~n~i~~~~~~~La~~L~~n~~L~~L~l~~~ 142 (166)
T d1io0a_ 94 LVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFT 142 (166)
T ss_dssp HHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCS
T ss_pred HHHHHHhCccccEEeeccCCCcCcHHHHHHHHHHHHhCCCcCEEeCcCC
Confidence 1233445556554443 334432 22334445566666666554
|