Citrus Sinensis ID: 036414

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250--
Protein Sequence
MPSSYIDHSSEDIWMMQKLMHLNFGSITLPAPPKNYSSSLKNLIFISALHPSSCTPDILSRLPTVQTLRISGDLSHYHSGVSKSLCELHKLECLKLANQGKMWQITRMILSEYKFPPSLTQLSLSNTELIEDPMPTLEKLPHLEVLKLKQNSYFERKLACVGCSSFPQLKILHLKSMLWLEEWTMGAGAMPKLESLILNPCAYLRKLPEELWRIKSLCKLELHWPQPELRQRLRAFEDMEWRYDIQLYPSGI
Secondary Structure (PSIPRED)
ccccccccccHHHHccccccEEEEccccccccccccccccccccEEEEEccccccHHHHcccccccEEEEEccccccHHHHHHHccccccccEEEEEEccccccHHHcccccccccccccEEEEEcccccccccccccccccccEEEEEccEEcccEEEEEcccccccccEEEEcccccccEEEEccccccccccEEEccccccccccccccccccccEEEEEcccHHHHHHHHHcccccccccEEEccccc
Secondary Structure Prediction (SSPRO)
ccccccEEccHHHHHHHHHHHEEcccccccccccccccccHHHHHHcccccccccHHHHHHcccccEEEEEEcccccHHHHHHHHHHHHHHcEEEEcccccccccccccccccccccccEEEEEEccccccccHHHHHHccccEEEEEEcccccccEEEEEccccccccEEEEEcccHHHcEEEEcccccccccEEEEccHHHHHHcccHHHHHHHHHEEEEccccHHHHHHHHHcccccccEEEEEccccc
Coil and Loop (DISEMBL)
mpssyidhssEDIWMMQKLMHlnfgsitlpappknysssLKNLIFIsalhpssctpdilsrlptvqtlrisgdlshyhsgvskslcelHKLECLKLANQGKMWQITRMILseykfppsltqlslsnteliedpmptleklphlevLKLKQnsyferklacvgcssfpqlkILHLKSMLWLEewtmgagampkleslilnpcayLRKLPEELWRIKSLCKlelhwpqpeLRQRLRAFEDMEWRydiqlypsgi
Flexible Loop (DISEMBL)
mpssyidhSSEDIWMMQKLMHLNFGSITLPAPPKNYSSSLKNLIFISALHPSSCTPDILSRLPTVQTLRISGDLSHYHSGVSKSLCELHKLECLKLANQGKMWQITRMILSEYKFPPSLTQLSLSNTELIEDPMPTLEKLPHLEVLKLKQNSYFERKLACVGCSSFPQLKILHLKSMLWLEEWTMGAGAMPKLESLILNPCAYLRKLPEELWRIKSLCKlelhwpqpeLRQRLRAFEDMEWRYDiqlypsgi
Low Complexity Region (SEG)
MPSSYIDHSSEDIWMMQKLMHLNFGSITLPAPPKNYSSSLKNLIFISALHPSSCTPDILSRLPTVQTLRISGDLSHYHSGVSKSlcelhkleclklANQGKMWQITRMILSEYKFPPSLTQLSLSNTELIEDPMPTLEKLPHLEVLKLKQNSYFERKLACVGCSSFPQLKILHLKSMLWLEEWTMGAGAMPKLESLILNPCAYLRKLPEELWRIKSLCKLELHWPQPELRQRLRAFEDMEWRYDIQLYPSGI
Disordered region (IsUnstruct)
***********DIWMMQKLMHLNFGSITLPAPPKNYSSSLKNLIFISALHPSSCTPDILSRLPTVQTLRISGDLSHYHSGVSKSLCELHKLECLKLANQGKMWQITRMILSEYKFPPSLTQLSLSNTELIEDPMPTLEKLPHLEVLKLKQNSYFERKLACVGCSSFPQLKILHLKSMLWLEEWTMGAGAMPKLESLILNPCAYLRKLPEELWRIKSLCKLELHWPQPELRQRLRAFEDMEWRYDIQLY****
Disordered Region (DISOPRED)
*PSSYIDHSSEDIWMMQKLMHLNFGSITL*********SLKNLIFISALHPSSCTPDILSRLPTVQTLRISGDLSHYHSGVSKSLCELHKLECLKLANQGKMWQITRMILSEYKFPPSLTQLSLSNTELIEDPMPTLEKLPHLEVLKLKQNSYFERKLACVGCSSFPQLKILHLKSMLWLEEWTMGAGAMPKLESLILNPCAYLRKLPEELWRIKSLCKLELHWPQPELRQRLRAFEDMEWRYDIQLYPSGI
Disordered Region (DISEMBL)
********SSEDIWMMQKLMHLNFGSITLPAPPKNYSSSLKNLIFISALHPSSCTPDILSRLPTVQTLRISGDLSHYHSGVSKSLCELHKLECLKLANQGKMWQITRMILSEYKFPPSLTQLSLSNTELIEDPMPTLEKLPHLEVLKLKQNSYFERKLACVGCSSFPQLKILHLKSMLWLEEWTMGAGAMPKLESLILNPCAYLRKLPEELWRIKSLCKLELHWPQPELRQRLRAFEDMEWRYDIQLYPSGI
Disordered Region (DISPRO)
*PSSYIDHSSEDIWMMQKLMHLNFGSITLPAPPKNYSSSLKNLIFISALHPSSCTPDILSRLPTVQTLRISGDLSHYHSGVSKSLCELHKLECLKLANQGKMWQITRMILSEYKFPPSLTQLSLSNTELIEDPMPTLEKLPHLEVLKLKQNSYFERKLACVGCSSFPQLKILHLKSMLWLEEWTMGAGAMPKLESLILNPCAYLRKLPEELWRIKSLCKLELHWPQPELRQRLRAFEDMEWRYDIQLYPS**
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MPSSYIDHSSEDIWMMQKLMHLNFGSITLPAPPKNYSSSLKNLIFISALHPSSCTPDILSRLPTVQTLRISGDLSHYHSGVSKSLCELHKLECLKLANQGKMWQITRMILSEYKFPPSLTQLSLSNTELIEDPMPTLEKLPHLEVLKLKQNSYFERKLACVGCSSFPQLKILHLKSMLWLEEWTMGAGAMPKLESLILNPCAYLRKLPEELWRIKSLCKLELHWPQPELRQRLRAFEDMEWRYDIQLYPSGI
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	252	2.2.26 [Sep-21-2011]
P59584	910	Disease resistance protei	yes	no	0.865	0.239	0.263	3e-15
Q9XIF0	906	Putative disease resistan	yes	no	0.809	0.225	0.339	3e-15
Q9FJB5	901	Disease resistance RPP8-l	no	no	0.535	0.149	0.328	5e-15
Q8W4J9	908	Disease resistance protei	no	no	0.484	0.134	0.349	1e-14
Q9FJK8	908	Probable disease resistan	no	no	0.484	0.134	0.357	1e-14
Q8W474	907	Probable disease resistan	no	no	0.690	0.191	0.345	3e-14
P0C8S1	906	Probable disease resistan	no	no	0.539	0.150	0.347	9e-14
P0DI18	1049	Probable disease resistan	no	no	0.369	0.088	0.468	7e-13
P0DI17	1049	Probable disease resistan	no	no	0.369	0.088	0.468	7e-13
Q8W3K3	910	Putative disease resistan	no	no	0.531	0.147	0.328	3e-11

>sp|P59584|RP8HA_ARATH Disease resistance protein RPH8A OS=Arabidopsis thaliana GN=RPH8A PE=3 SV=1

 Score = 82.4 bits (202), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 64/243 (26%), Positives = 114/243 (46%), Gaps = 25/243 (10%)

Query: 15  MMQKLMHLNFGSITLPAPPKNYS--SSLKNLIFISALHPSSCTPDILSRLPTVQTLRISG 72
           ++++++ L + SI +    K       L NL ++        +   L R+  ++ L +S 
Sbjct: 646 VLKEMIELRYLSIPVKMDDKTKLELGDLVNLEYLYGFSTQHTSVTDLLRMTKLRNLTVSL 705

Query: 73  DLSHYHSGVSKSLCELHKLECLKLANQGKMWQITRM----------------------IL 110
              +    +S SL EL  LE L +    K + +  M                      I 
Sbjct: 706 SERYNFKTLSSSLRELRNLETLYVLFSRKTYMVDHMGEFVLDHFIHLKELGLVVRMSKIP 765

Query: 111 SEYKFPPSLTQLSLSNTELIEDPMPTLEKLPHLEVLKLKQNSYFERKLACVGCSSFPQLK 170
            +++FPP L  + L    + EDPMP LEKL HL+ ++L+  ++  R++ C     F QL 
Sbjct: 766 DQHQFPPHLVHIFLFYCGMEEDPMPILEKLHHLKSVQLRYKAFVGRRMVC-SKDGFTQLC 824

Query: 171 ILHLKSMLWLEEWTMGAGAMPKLESLILNPCAYLRKLPEELWRIKSLCKLELHWPQPELR 230
            L +     LE+W +  G+MP L +L ++ C  L++LP+ L  I SL +L++   + E +
Sbjct: 825 ALDISKQSELEDWIVEEGSMPCLRTLTIHDCEKLKELPDGLKYITSLKELKIEGMKREWK 884

Query: 231 QRL 233
           ++L
Sbjct: 885 EKL 887

Disease resistance protein. Resistance proteins guard the plant against pathogens that contain an appropriate avirulence protein via an indirect interaction with this avirulence protein. That triggers a defense system including the hypersensitive response, which restricts the pathogen growth. In contrast to RPP8, it does not specifically recognize the Emco5 avirulence protein from Hyaloperonospora parasitica.
Arabidopsis thaliana (taxid: 3702)

>sp|Q9XIF0|DRL13_ARATH Putative disease resistance protein At1g59780 OS=Arabidopsis thaliana GN=At1g59780 PE=2 SV=1

 Score = 82.4 bits (202), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 74/218 (33%), Positives = 112/218 (51%), Gaps = 14/218 (6%)

Query: 40  LKNLIFISALHPSSCTPDILSRLPTVQTLRISGDLSHYHSGVSKSLCELHKLECLKLANQ 99
           L+ LI  S    S      +++L T+Q L ISG+  H  + +S +L  L  LE L +   
Sbjct: 671 LETLINFSTKDSSVTDLHRMTKLRTLQIL-ISGEGLHMET-LSSALSMLGHLEDLTVTPS 728

Query: 100 GKMWQ------ITRMILSEYK-FPPSLTQLSLSNTELIEDPMPTLEKLPHLEVLKLKQNS 152
               Q      I R +L + + FP  LT +SL    L EDPMPTLEKL  L+V+ L  N+
Sbjct: 729 ENSVQFKHPKLIYRPMLPDVQHFPSHLTTISLVYCFLEEDPMPTLEKLLQLKVVSLWYNA 788

Query: 153 YFERKLACVGCSSFPQLKILHLKSMLWLEEWTMGAGAMPKLESLILNPCAYLRKLPEELW 212
           Y  R++ C G   FP L  L +  +  LEEW +  G+MP L +L +  C  L+++P+ L 
Sbjct: 789 YVGRRMVCTG-GGFPPLHRLEIWGLDALEEWIVEEGSMPLLHTLHIVDCKKLKEIPDGLR 847

Query: 213 RIKSLCKLELHWPQPELRQRL-RAFEDMEWRYDIQLYP 249
            I SL +L +   +   ++++ +  ED    Y +Q  P
Sbjct: 848 FISSLKELAIRTNEKVFQKKVSKGGEDY---YKMQHVP 882

Potential disease resistance protein.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FJB5|RP8L3_ARATH Disease resistance RPP8-like protein 3 OS=Arabidopsis thaliana GN=RPP8L3 PE=2 SV=1

 Score = 81.6 bits (200), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 46/140 (32%), Positives = 78/140 (55%), Gaps = 5/140 (3%)

Query: 111 SEYKFPPSLTQLSLSNTELIEDPMPTLEKLPHLEVLKLKQNSYFERKLACVGCSSFPQLK 170
            +++ PP +  + L    + EDPMP LEKL HL+ ++L++ ++  R++ C     FPQL+
Sbjct: 755 DQHQLPPHIAHIYLLFCHMEEDPMPILEKLLHLKSVELRRKAFIGRRMVC-SKGGFPQLR 813

Query: 171 ILHLKSMLWLEEWTMGAGAMPKLESLILNPCAYLRKLPEELWRIKSLCKLELHWPQPELR 230
            L +     LEEW +  G+MP L  LI++ C  L +LP+ L  + SL +L++   + E +
Sbjct: 814 ALQISEQSELEEWIVEEGSMPCLRDLIIHSCEKLEELPDGLKYVTSLKELKIEGMKREWK 873

Query: 231 QRLRAFEDMEWRYDIQLYPS 250
           ++L      E  Y +Q  P 
Sbjct: 874 EKLVG----EDYYKVQHIPD 889

Disease resistance protein.

Arabidopsis thaliana (taxid: 3702)

>sp|Q8W4J9|RPP8_ARATH Disease resistance protein RPP8 OS=Arabidopsis thaliana GN=RPP8 PE=1 SV=2

 Score = 80.5 bits (197), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 43/123 (34%), Positives = 73/123 (59%), Gaps = 1/123 (0%)

Query: 111 SEYKFPPSLTQLSLSNTELIEDPMPTLEKLPHLEVLKLKQNSYFERKLACVGCSSFPQLK 170
            +++FPP L  L L    + EDPMP LEKL HL+ ++L + ++   ++ C     FPQL 
Sbjct: 764 DQHQFPPHLVHLFLIYCGMEEDPMPILEKLLHLKSVRLARKAFLGSRMVC-SKGGFPQLC 822

Query: 171 ILHLKSMLWLEEWTMGAGAMPKLESLILNPCAYLRKLPEELWRIKSLCKLELHWPQPELR 230
           ++ +     LEEW +  G+MP L +L ++ C  L++LP+ L  I SL +L++   + E +
Sbjct: 823 VIEISKESELEEWIVEEGSMPCLRTLTIDDCKKLKELPDGLKYITSLKELKIEGMKREWK 882

Query: 231 QRL 233
           ++L
Sbjct: 883 EKL 885

Disease resistance protein. Resistance proteins guard the plant against pathogens that contain an appropriate avirulence protein via an indirect interaction with this avirulence protein. That triggers a defense system including the hypersensitive response, which restricts the pathogen growth. The interaction with TIP (TCV-interacting protein) may be essential for the recognition of the avirulence proteins, and the triggering of the defense response.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FJK8|RP8L4_ARATH Probable disease resistance RPP8-like protein 4 OS=Arabidopsis thaliana GN=RPP8L4 PE=2 SV=1

 Score = 80.1 bits (196), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 44/123 (35%), Positives = 72/123 (58%), Gaps = 1/123 (0%)

Query: 111 SEYKFPPSLTQLSLSNTELIEDPMPTLEKLPHLEVLKLKQNSYFERKLACVGCSSFPQLK 170
            +++FPP L  + L +  + EDPMP LEKL HL+ + L   ++  R++ C     FPQL 
Sbjct: 764 DQHQFPPHLAHIHLVHCVMKEDPMPILEKLLHLKSVALSYGAFIGRRVVC-SKGGFPQLC 822

Query: 171 ILHLKSMLWLEEWTMGAGAMPKLESLILNPCAYLRKLPEELWRIKSLCKLELHWPQPELR 230
            L +     LEEW +  G+MP L +L ++ C  L++LP+ L  I SL +L++   + E +
Sbjct: 823 ALGISGESELEEWIVEEGSMPCLRTLTIHDCEKLKELPDGLKYITSLKELKIREMKREWK 882

Query: 231 QRL 233
           ++L
Sbjct: 883 EKL 885

Potential disease resistance protein.

Arabidopsis thaliana (taxid: 3702)

>sp|Q8W474|DRL7_ARATH Probable disease resistance protein At1g58390 OS=Arabidopsis thaliana GN=At1g58390 PE=2 SV=4

 Score = 79.0 bits (193), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 67/194 (34%), Positives = 99/194 (51%), Gaps = 20/194 (10%)

Query: 40  LKNLIFISALHPSSCTPDILSRLPTVQTLRISGDLSHYHSGVSKSLCELHKLECL----- 94
           L+ L++ S  H SS     ++RL T+  +R++   S     +S S+  L  LE L     
Sbjct: 681 LETLVYFSTWHSSSKDLCGMTRLMTL-AIRLTRVTST--ETLSASISGLRNLEYLYIVGT 737

Query: 95  ---KLANQG---KMWQITRMILSEY-----KFPPSLTQLSLSNTELIEDPMPTLEKLPHL 143
              K+  +G       +  ++L  Y      FP  LT + LS   L EDPMP LEKL HL
Sbjct: 738 HSKKMREEGIVLDFIHLKHLLLDLYMPRQQHFPSRLTFVKLSECGLEEDPMPILEKLLHL 797

Query: 144 EVLKLKQNSYFERKLACVGCSSFPQLKILHLKSMLWLEEWTMGAGAMPKLESLILNPCAY 203
           + + L + SY  R++ C G   FPQLK L +  +   EEW +  G+MP LE+L +  C  
Sbjct: 798 KGVILLKGSYCGRRMVCSG-GGFPQLKKLEIVGLNKWEEWLVEEGSMPLLETLSILDCEE 856

Query: 204 LRKLPEELWRIKSL 217
           L+++P+ L  I SL
Sbjct: 857 LKEIPDGLRFIYSL 870

Possible disease resistance protein.

Arabidopsis thaliana (taxid: 3702)

>sp|P0C8S1|RP8L2_ARATH Probable disease resistance RPP8-like protein 2 OS=Arabidopsis thaliana GN=RPP8L2 PE=1 SV=1

 Score = 77.4 bits (189), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 49/141 (34%), Positives = 75/141 (53%), Gaps = 5/141 (3%)

Query: 111 SEYKFPPSLTQLSLSNTELIEDPMPTLEKLPHLEVLKLKQNSYFERKLACVGCSSFPQLK 170
            +Y+FPP L  + L    + EDPMP LEKL HL+ + L   ++  R++ C     FPQL 
Sbjct: 762 DQYRFPPHLAHIWLIGCRMEEDPMPILEKLLHLKSVYLSSGAFLGRRMVC-SKGGFPQLL 820

Query: 171 ILHLKSMLWLEEWTMGAGAMPKLESLILNPCAYLRKLPEELWRIKSLCKLELHWPQPELR 230
            L +     L EW +  G+MP L +L ++ C  L++LP+ L  +  L +L++   + E  
Sbjct: 821 ALKMSYKKELVEWRVEEGSMPCLRTLTIDNCKKLKQLPDGLKYVTCLKELKIERMKREWT 880

Query: 231 QRLR-AFEDMEWRYDIQLYPS 250
           +RL    ED    Y +Q  PS
Sbjct: 881 ERLVIGGEDY---YKVQHIPS 898

Potential disease resistance protein.

Arabidopsis thaliana (taxid: 3702)

>sp|P0DI18|DRL45_ARATH Probable disease resistance protein RDL6 OS=Arabidopsis thaliana GN=RDL6 PE=2 SV=1

 Score = 74.3 bits (181), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 44/94 (46%), Positives = 57/94 (60%), Gaps = 1/94 (1%)

Query: 115 FPPSLTQLSLSNTELIEDPMPTLEKLPHLEVLKLKQNSYFERKLACVGCSSFPQLKILHL 174
            P  LT +SL    L EDPMPTLE+L HL+ L+L   S+  R + C G S FPQL  L L
Sbjct: 871 LPSHLTSISLFFCCLEEDPMPTLERLVHLKELQLLFRSFSGRIMVCAG-SGFPQLHKLKL 929

Query: 175 KSMLWLEEWTMGAGAMPKLESLILNPCAYLRKLP 208
             +  LEEW +  G+MP+L +L +  C  L+KLP
Sbjct: 930 SELDGLEEWIVEDGSMPQLHTLEIRRCPKLKKLP 963

Potential disease resistance protein.

Arabidopsis thaliana (taxid: 3702)

>sp|P0DI17|DRL11_ARATH Probable disease resistance protein RF9 OS=Arabidopsis thaliana GN=RF9 PE=2 SV=1

 Score = 74.3 bits (181), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 44/94 (46%), Positives = 57/94 (60%), Gaps = 1/94 (1%)

Query: 115 FPPSLTQLSLSNTELIEDPMPTLEKLPHLEVLKLKQNSYFERKLACVGCSSFPQLKILHL 174
            P  LT +SL    L EDPMPTLE+L HL+ L+L   S+  R + C G S FPQL  L L
Sbjct: 871 LPSHLTSISLFFCCLEEDPMPTLERLVHLKELQLLFRSFSGRIMVCAG-SGFPQLHKLKL 929

Query: 175 KSMLWLEEWTMGAGAMPKLESLILNPCAYLRKLP 208
             +  LEEW +  G+MP+L +L +  C  L+KLP
Sbjct: 930 SELDGLEEWIVEDGSMPQLHTLEIRRCPKLKKLP 963

Potential disease resistance protein.

Arabidopsis thaliana (taxid: 3702)

>sp|Q8W3K3|DRL8_ARATH Putative disease resistance protein At1g58400 OS=Arabidopsis thaliana GN=At1g58400 PE=3 SV=1

 Score = 68.9 bits (167), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 46/140 (32%), Positives = 73/140 (52%), Gaps = 6/140 (4%)

Query: 111 SEYKFPPSLTQLSLSNTELIEDPMPTLEKLPHLEVLKLKQNSYFERKLACVGCSSFPQLK 170
            E  FP  LT +SL    L+EDP+P LEKL  L+ ++L   ++  +++       FPQL 
Sbjct: 769 DEQHFPSHLTSISLDGCCLVEDPLPILEKLLELKEVRLDFRAFCGKRMVSSD-GGFPQLH 827

Query: 171 ILHLKSMLWLEEWTMGAGAMPKLESLILNPCAYLRKLPEELWRIKSLCKLELHWPQPELR 230
            L++  +   EEW +  G+MP+L +L +  C  L++LP+ L  I S+  L++     E+ 
Sbjct: 828 RLYIWGLAEWEEWIVEEGSMPRLHTLTIWNCQKLKQLPDGLRFIYSIKDLDMDKKWKEIL 887

Query: 231 QRLRAFEDMEWRYDIQLYPS 250
                 E  E  Y +Q  PS
Sbjct: 888 S-----EGGEEYYKVQHIPS 902

Potential disease resistance protein.

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	252
359491404	922	PREDICTED: probable disease resistance R	0.936	0.255	0.306	3e-18
359496848	856	PREDICTED: disease resistance RPP8-like	0.924	0.272	0.298	5e-18
359495931	1359	PREDICTED: probable disease resistance p	0.821	0.152	0.320	3e-17
296081343	1312	unnamed protein product [Vitis vinifera]	0.821	0.157	0.320	5e-17
147766035	902	hypothetical protein VITISV_038742 [Viti	0.924	0.258	0.290	7e-17
147795782	1450	hypothetical protein VITISV_023621 [Viti	0.781	0.135	0.318	1e-16
54261825	842	Putative disease resistance protein, ide	0.845	0.252	0.336	2e-16
356567194	750	PREDICTED: disease resistance protein RP	0.888	0.298	0.302	3e-16
255577203	1064	conserved hypothetical protein [Ricinus	0.880	0.208	0.307	1e-15
225454212	936	PREDICTED: putative disease resistance p	0.888	0.239	0.302	3e-15

>gi|359491404|ref|XP_002274414.2| PREDICTED: probable disease resistance RPP8-like protein 2-like [Vitis vinifera]

 Score = 98.2 bits (243), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 83/271 (30%), Positives = 129/271 (47%), Gaps = 35/271 (12%)

Query: 13  IWMMQKLMHLNFGSITLPAPPKNYSSSLKNLIFISAL--HPSSCTPDILSRLPTVQTLRI 70
           IW MQKL HL F  +   A      +SL NL  +  +  + +S   + LS+L  ++ L +
Sbjct: 644 IWKMQKLRHLYFNELEEMAVNPPTDASLANLQTLHGICINQTSYVENGLSKLTNLRELGL 703

Query: 71  SGDLSHYHSGVSKSLCELHKLECLKLANQGKMWQ-------------------------I 105
            GDL  +   + K +    +LECLKL  +  M                           +
Sbjct: 704 HGDLLLHEEAIGKWIFSSERLECLKLHTRDVMGDFAKNAIPKLNFSSHPHLIKLHLKGFM 763

Query: 106 TRMILSEYKFPPSLTQLSLSNTELIEDPMPTLEKLPHLEVLKLKQNSYFERKLACVGCSS 165
            ++  +EY FP +LT+LSL  + L+EDPM  LE L  L VLKLK ++Y  +++ C  C  
Sbjct: 764 AKLFDAEY-FPQNLTELSLKGSFLMEDPMVKLEMLQSLRVLKLKHSAYLGKEMIC-SCGG 821

Query: 166 FPQLKILHLKSMLWLEEWTMGAGAMPKLESLILNPCAYLRKLPEELWRIKSLCKLELHWP 225
           FPQL  L L  +  +E W +  GAM +L  L +  C  L+ +P  L  + ++ KL+L + 
Sbjct: 822 FPQLHFLKLSFLNTVERWRIEDGAMGRLRQLEIIECKRLKIVPRGLQPVTTIHKLKLGYM 881

Query: 226 QPELRQRLRAFEDMEWRYDIQ-----LYPSG 251
             E   +++  +   W Y I+     L P G
Sbjct: 882 PREFEMKVQERQGENW-YKIEHAVVALNPGG 911

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359496848|ref|XP_002269653.2| PREDICTED: disease resistance RPP8-like protein 3-like [Vitis vinifera]

 Score = 97.4 bits (241), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 77/258 (29%), Positives = 130/258 (50%), Gaps = 25/258 (9%)

Query: 13  IWMMQKLMHLNFGSITLPA-PPKNYSSSLKNLIFISALHPSSCTPDILSRLPTVQTLRIS 71
           +W M  L HL     ++   PP + S      +   +++ +   PD+L +L  ++ L I 
Sbjct: 600 LWNMPGLRHLYLEKTSIAGHPPVHVSVMHLQTLSTVSIYGNQWIPDLLGKLTNLRKLGIH 659

Query: 72  GDLSHYHSGVSKSLCELHKLECLKLANQGKMWQIT-RMILSE------------YKFP-- 116
           G  +     +S+ L +L  L+ L+L     + + T +++L++             K P  
Sbjct: 660 GYFASQTEALSRCLVKLSNLQNLQLRGTELILEPTIKLLLNQPNIHKLHLSGPIEKLPDP 719

Query: 117 ----PSLTQLSLSNTELIEDPMPTLEKLPHLEVLKLKQNSYFERKLACVGCSSFPQLKIL 172
               P+LT++ L N+ L++D    L KLP+L++LKL  NS+F +++ C   S FP+L  L
Sbjct: 720 QEIQPNLTKIILENSLLVQDIFVILGKLPNLQMLKLLINSFFGKEITC-SASGFPKLHGL 778

Query: 173 HLKSMLWLEEWTMGAGAMPKLESLILNPCAYLRKLPEELWRIKSLCKLELHWPQPELRQR 232
            L  ++ LEEW +  GAMP L  LI++ C  L+K+PE    + +L +L L     E   R
Sbjct: 779 ELSELVNLEEWRVDDGAMPSLRHLIIDHCDQLKKIPEGFQYLTALRELFLLNMPDEFEAR 838

Query: 233 LRAFEDMEWRYDIQLYPS 250
           ++     +W Y IQ  PS
Sbjct: 839 IKG---DDW-YKIQHIPS 852

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359495931|ref|XP_003635117.1| PREDICTED: probable disease resistance protein RDL6/RF9-like [Vitis vinifera]

 Score = 94.7 bits (234), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 76/237 (32%), Positives = 119/237 (50%), Gaps = 30/237 (12%)

Query: 13   IWMMQKLMHLNFG----SITLPAPPKNYSSSLKNLIFISALHPSSCTPDILSRLPTVQTL 68
            IW MQ+L  L       S  +P P    SS+L+ L+ +     +  T D L +   ++ L
Sbjct: 1112 IWNMQQLRQLYLNERCHSKVMPQPSVGSSSTLRVLVGLFVDEETPVT-DGLDQFINLRKL 1170

Query: 69   RISGDL-SHYHSGVSKSLCELHKLECLKLAN---QGKMWQITRMILSEY----------- 113
             ++  L S     V + + +L+ LE L+L +   + + W +    L+ +           
Sbjct: 1171 GLTCHLPSSQQEAVVEWVQKLNNLESLRLKSIDEENQFWDLDLKPLAHHVNLSCLYLLGR 1230

Query: 114  --------KFPPSLTQLSLSNTELIEDPMPTLEKLPHLEVLKLKQNSYFERKLACVGCSS 165
                    +FP SL +L+LS +EL EDPM TL+KLP+L+VL+   NSY  + + C     
Sbjct: 1231 LKNPSVGSEFPHSLIELTLSGSELEEDPMQTLDKLPNLKVLRFLANSYLGKNMGC-SSGG 1289

Query: 166  FPQLKILHLKSMLWLEEWTMGAGAMPKLESLILNPCAYLRKLPEELWRIKSLCKLEL 222
            FPQL++L L  +  LEEW +  GA+  L  L +  C  L+ LPE L R ++  KL+L
Sbjct: 1290 FPQLQVLKLWKLEQLEEWNVDEGALQALWDLDIRSCKRLKMLPEAL-RHRARLKLKL 1345

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|296081343|emb|CBI17689.3| unnamed protein product [Vitis vinifera]

 Score = 94.4 bits (233), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 76/237 (32%), Positives = 119/237 (50%), Gaps = 30/237 (12%)

Query: 13   IWMMQKLMHLNFG----SITLPAPPKNYSSSLKNLIFISALHPSSCTPDILSRLPTVQTL 68
            IW MQ+L  L       S  +P P    SS+L+ L+ +     +  T D L +   ++ L
Sbjct: 1065 IWNMQQLRQLYLNERCHSKVMPQPSVGSSSTLRVLVGLFVDEETPVT-DGLDQFINLRKL 1123

Query: 69   RISGDL-SHYHSGVSKSLCELHKLECLKLAN---QGKMWQITRMILSEY----------- 113
             ++  L S     V + + +L+ LE L+L +   + + W +    L+ +           
Sbjct: 1124 GLTCHLPSSQQEAVVEWVQKLNNLESLRLKSIDEENQFWDLDLKPLAHHVNLSCLYLLGR 1183

Query: 114  --------KFPPSLTQLSLSNTELIEDPMPTLEKLPHLEVLKLKQNSYFERKLACVGCSS 165
                    +FP SL +L+LS +EL EDPM TL+KLP+L+VL+   NSY  + + C     
Sbjct: 1184 LKNPSVGSEFPHSLIELTLSGSELEEDPMQTLDKLPNLKVLRFLANSYLGKNMGC-SSGG 1242

Query: 166  FPQLKILHLKSMLWLEEWTMGAGAMPKLESLILNPCAYLRKLPEELWRIKSLCKLEL 222
            FPQL++L L  +  LEEW +  GA+  L  L +  C  L+ LPE L R ++  KL+L
Sbjct: 1243 FPQLQVLKLWKLEQLEEWNVDEGALQALWDLDIRSCKRLKMLPEAL-RHRARLKLKL 1298

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147766035|emb|CAN70214.1| hypothetical protein VITISV_038742 [Vitis vinifera]

 Score = 93.6 bits (231), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 75/258 (29%), Positives = 129/258 (50%), Gaps = 25/258 (9%)

Query: 13  IWMMQKLMHLNFGSITLPA-PPKNYSSSLKNLIFISALHPSSCTPDILSRLPTVQTLRIS 71
           +W M  L HL     ++   PP + S      +   +++ +   PD+L +L  ++ L I 
Sbjct: 646 LWNMPGLRHLYLEKTSIAGHPPVHVSVMHLQTLSTVSIYGNQWIPDLLGKLTNLRKLGIH 705

Query: 72  GDLSHYHSGVSKSLCELHKLECLKLANQGKMWQIT-RMILSE------------YKFP-- 116
           G  +     +S+ L +L  L+ L+L     + + T +++L++             K P  
Sbjct: 706 GYFASQTEALSRCLVKLSNLQNLQLRGTELILEPTIKLLLNQPNIHKLHLSGPIEKLPDP 765

Query: 117 ----PSLTQLSLSNTELIEDPMPTLEKLPHLEVLKLKQNSYFERKLACVGCSSFPQLKIL 172
               P+LT++ L  + L++D    L KLP+L++LKL  NS+F +++ C   S FP+L  L
Sbjct: 766 QEIQPNLTKIILEKSLLVQDIFVILGKLPNLQMLKLLINSFFGKEITC-SASGFPKLHGL 824

Query: 173 HLKSMLWLEEWTMGAGAMPKLESLILNPCAYLRKLPEELWRIKSLCKLELHWPQPELRQR 232
            L  ++ LEEW +  GAMP L  L+++ C  L+K+PE    + +L +L L     E   R
Sbjct: 825 ELSELVNLEEWRVDDGAMPSLRHLVIDHCDQLKKIPEGFQYLTALRELFLLNMPDEFEIR 884

Query: 233 LRAFEDMEWRYDIQLYPS 250
           ++     +W Y IQ  PS
Sbjct: 885 IKG---DDW-YKIQHIPS 898

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147795782|emb|CAN61050.1| hypothetical protein VITISV_023621 [Vitis vinifera]

 Score = 92.4 bits (228), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 72/226 (31%), Positives = 111/226 (49%), Gaps = 29/226 (12%)

Query: 13   IWMMQKLMHLNFG----SITLPAPPKNYSSSLKNLIFISALHPSSCTPDILSRLPTVQTL 68
            IW MQ+L  L       S  +P P    SS+L+ L+ +     +  T D L +   ++ L
Sbjct: 1112 IWNMQQLRQLYLNERCHSKVMPQPSVGSSSTLRVLVGLFVDEETPVT-DGLDQFINLRKL 1170

Query: 69   RISGDL-SHYHSGVSKSLCELHKLECLKLAN---QGKMWQITRMILSEY----------- 113
             ++  L S     V + + +L+ LE L+L +   + + W +    L+ +           
Sbjct: 1171 GLTCHLPSSQQEAVVEWVQKLNNLESLRLKSIDEENQFWDLDLKPLAHHVNLSCLYLLGR 1230

Query: 114  --------KFPPSLTQLSLSNTELIEDPMPTLEKLPHLEVLKLKQNSYFERKLACVGCSS 165
                     FP SL +L+LS +EL EDPM TL+KLP+L+VL+   NSY  + + C     
Sbjct: 1231 LKNPSVGSXFPHSLIELTLSGSELEEDPMQTLDKLPNLKVLRFLANSYLGKNMGC-SSGG 1289

Query: 166  FPQLKILHLKSMLWLEEWTMGAGAMPKLESLILNPCAYLRKLPEEL 211
            FPQL++L L  +  LEEW +  GA+  L  L +  C  L+ LPE L
Sbjct: 1290 FPQLQVLKLWKLEQLEEWNVDEGALQALWDLDIRSCKRLKMLPEAL 1335

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|54261825|gb|AAV31175.1| Putative disease resistance protein, identical [Solanum tuberosum]

 Score = 92.0 bits (227), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 77/229 (33%), Positives = 116/229 (50%), Gaps = 16/229 (6%)

Query: 11  EDIWMMQKLMHLNFGSITLPAPPKNYSSSLKNLIFISALHPSSCTPDILSRLPTVQTLRI 70
           ++IW M +L HL    I+L +P       L NL  +S L PS CT +I   +  V+ L I
Sbjct: 544 KEIWQMSQLRHLCAIGISLSSPGDKV---LGNLQSVSGLSPSCCTKEIFEGIKKVKKLAI 600

Query: 71  SGDLSHYHSGVS--KSLCELHKLECLKLANQGKMWQI---TRM--ILSEYKFPPSLTQLS 123
           SG    Y + +    +L  L  LE L +A Q   W I   TR   + S   FP  L +L 
Sbjct: 601 SGRKEEYPTDLKWIDNLKYLQDLESLSIAIQ--YWYIINSTRFFSLTSPDSFPQKLKKLK 658

Query: 124 LSNTELIEDPMPTLEKLPHLEVLKLKQNSYFERKLACVGCSSFPQLKILHLKSMLWLEEW 183
           LS T L  + M  + KLP LEVL+LK+ ++   K        F +L+ L L++++ L++W
Sbjct: 659 LSRTCLPWEYMSIISKLPVLEVLQLKRYAFRGHKWKATDQIGFQKLRFLLLENLM-LDKW 717

Query: 184 TMGAGA---MPKLESLILNPCAYLRKLPEELWRIKSLCKLELHWPQPEL 229
           T+   +    P LE +++  C YL+++P+     K L  +ELH   P L
Sbjct: 718 TITTVSHDHFPSLERVLITDCIYLKEIPQGFADSKKLELIELHRCDPSL 766

Source: Solanum tuberosum

Species: Solanum tuberosum

Genus: Solanum

Family: Solanaceae

Order: Solanales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356567194|ref|XP_003551806.1| PREDICTED: disease resistance protein RPP13-like [Glycine max]

 Score = 91.3 bits (225), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 72/238 (30%), Positives = 120/238 (50%), Gaps = 14/238 (5%)

Query: 5   YIDHSSEDIWMMQKLMHLNF-GSITLPAPPKNYSSSLKNLIFISALHPSSCTPDILSRL- 62
           Y    S  IW +++L HL   G+  LP P  N   +L+ L+ +S  +P      + S + 
Sbjct: 509 YSGTVSSKIWTLKRLRHLYLMGNGKLPLPKANRMENLQTLV-LSGDYPQQIIFLLNSGIF 567

Query: 63  PTVQTLRISGDLSHYHSGVSKSLCELHKLECLKLANQGKMWQITRMILSEYKFPPSLTQL 122
           P ++ L +    S    G+  SL  L  L  LK+           ++L    FP +LT++
Sbjct: 568 PRLRKLALRCYNSVEGPGMLPSLQRLSNLHSLKVMRG------CELLLDTNAFPSNLTKI 621

Query: 123 SLSNTELIEDP---MPTLEKLPHLEVLKLKQNSYFERKLACVGCSSFPQLKILHLKSMLW 179
           +L +     DP   M TL +LP+L++LK+    + +  L  +G   FPQL++LH+ + + 
Sbjct: 622 TLKDLHAFRDPQSLMKTLGRLPNLQILKVSFCMHNDIHLD-IGRGEFPQLQVLHM-TQIN 679

Query: 180 LEEWTMGAGAMPKLESLILNPCAYLRKLPEELWRIKSLCKLELHWPQPELRQRLRAFE 237
           + +W +   AMP+L  L++  C  L +LPEELW + +L  + + WP  EL   L+  E
Sbjct: 680 VRQWRLEKDAMPRLRHLLIEECYGLSELPEELWSMTALRLVHVSWPSQELANSLKNVE 737

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255577203|ref|XP_002529484.1| conserved hypothetical protein [Ricinus communis] gi|223531042|gb|EEF32894.1| conserved hypothetical protein [Ricinus communis]

 Score = 89.7 bits (221), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 82/267 (30%), Positives = 133/267 (49%), Gaps = 45/267 (16%)

Query: 13   IWMMQKLMHL----NFGSITLPAPPKNYSSSLKNL--IFISALHPSSCTPDILSRLPTVQ 66
            IW MQKL HL    +F S+ +P    +    L+ L  +F+    P     D LS +  + 
Sbjct: 792  IWKMQKLRHLFLDESFRSMFIPRQEDSSLVELQTLWGLFLDEDSPVRNGLDTLSGITKLG 851

Query: 67   TL-RISG-----DLSHYHSGVSKSLCELHKLECLKL-----ANQ---------------- 99
             + ++SG      +S   + V+  +  L KL+ L+L     +NQ                
Sbjct: 852  LICKMSGPSRKTAMSSQLNAVANWVQNL-KLQSLRLKSFDDSNQPSELYLNSLSGHVDLT 910

Query: 100  -----GKMWQITRMILSEYKFPPSLTQLSLSNTELIEDPMPTLEKLPHLEVLKLKQNSYF 154
                 GK   + R +LSE   P +L +L+LS + L EDPM TL+KLP+L ++ L   S+ 
Sbjct: 911  SIYLVGKF--MNRNLLSE--LPNNLIELTLSASGLAEDPMQTLDKLPNLRIVILLLGSFT 966

Query: 155  ERKLACVGCSSFPQLKILHLKSMLWLEEWTMGAGAMPKLESLILNPCAYLRKLPEELWRI 214
            E+K  C     FP+L++L  K ++ LEEW +  GA+P L+ L +  C  L+ LP+ L  +
Sbjct: 967  EKKYLC-SFGGFPKLEVLKFKKLVQLEEWKVEEGALPSLKDLEIESCTNLKMLPDGLQHV 1025

Query: 215  KSLCKLELHWPQPELRQRLRAFEDMEW 241
            ++L KL+L    P +  R++  +  +W
Sbjct: 1026 RTLRKLKLT-NLPMISSRIKNNQGEDW 1051

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225454212|ref|XP_002274233.1| PREDICTED: putative disease resistance protein At1g50180-like [Vitis vinifera]

 Score = 88.2 bits (217), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 86/284 (30%), Positives = 125/284 (44%), Gaps = 60/284 (21%)

Query: 13  IWMMQKLMHLN--FGSIT----LPAPPKNY--SSSLKNLIFISALHPSSCTPDILSRLPT 64
           IW +Q+L HLN  +G ++    L      Y     L NL  ++    S    D L +L  
Sbjct: 647 IWKLQELRHLNCCYGEMSSQFKLNKCMNGYLGVEQLTNLQTLALPVGSWLEGDGLGKLTQ 706

Query: 65  VQTLRISGDLSHY-HSGVSKSLCELHKLECLKLANQGKMWQITRM--------------I 109
           ++ LR+ G L+ Y   G   S+ EL  L  L L N    WQ+ +               +
Sbjct: 707 LRKLRLVGPLAPYLKKGFFDSIAELTTLRTLFLGN----WQVDKKKTLLNRVGLKWQENV 762

Query: 110 LSE----------------YK----------------FPPSLTQLSLSNTELIEDPMPTL 137
           + E                YK                +PP+L +L+LS  EL +DPM  L
Sbjct: 763 VEEKTLLPGLMSFSRHTYLYKVHLYGKVDKLPEQTEFYPPNLLKLTLSKCELEDDPMLIL 822

Query: 138 EKLPHLEVLKLKQNSYFERKLACVGCSSFPQLKILHLKSMLWLEEWTMGAGAMPKLESLI 197
           EKLP L +L L + SY  +K+ C  C  F QL+ L L  +  LEE T+  GAM  L +L 
Sbjct: 823 EKLPTLRILGLLRGSYVGKKMVC-SCGGFLQLESLELNGLNELEELTVEEGAMCNLRTLQ 881

Query: 198 LNPCAYLRKLPEELWRIKSLCKLELHWPQPELRQRLRAFEDMEW 241
           +  C  ++K P  L ++K L KL L     +L + ++  E  EW
Sbjct: 882 ILSCDKMKKFPHGLLQMKKLEKLGLIRTSGKLIEEVQQTEGEEW 925

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	252
TAIR|locus:2169523	901	AT5G35450 [Arabidopsis thalian	0.539	0.150	0.340	4.6e-16
TAIR|locus:2176486	908	RPP8 "RECOGNITION OF PERONOSPO	0.492	0.136	0.352	2.6e-15
TAIR|locus:2152536	908	AT5G48620 [Arabidopsis thalian	0.492	0.136	0.36	4.3e-15
TAIR|locus:2025916	906	AT1G59780 "AT1G59780" [Arabido	0.813	0.226	0.313	7e-15
TAIR|locus:504956182	1049	AT1G58848 [Arabidopsis thalian	0.460	0.110	0.415	1.4e-14
TAIR|locus:2826978	1049	AT1G59218 [Arabidopsis thalian	0.460	0.110	0.415	1.4e-14
TAIR|locus:2037639	907	AT1G58390 "AT1G58390" [Arabido	0.404	0.112	0.446	2.4e-14
TAIR|locus:504956186	1138	AT1G58602 [Arabidopsis thalian	0.555	0.123	0.355	6.2e-13
TAIR|locus:504956184	1017	AT1G58807 "AT1G58807" [Arabido	0.559	0.138	0.348	2.4e-12
TAIR|locus:2827038	1017	AT1G59124 "AT1G59124" [Arabido	0.559	0.138	0.348	2.4e-12

TAIR|locus:2169523 AT5G35450 [Arabidopsis thaliana (taxid:3702)]

 Score = 212 (79.7 bits), Expect = 4.6e-16, P = 4.6e-16
 Identities = 48/141 (34%), Positives = 80/141 (56%)

Query:   109 ILSEYKFPPSLTQLSLSNTELIEDPMPTLEKLPHLEVLKLKQNSYFERKLACVGCSSFPQ 168
             I  +++ PP +  + L    + EDPMP LEKL HL+ ++L++ ++  R++ C     FPQ
Sbjct:   753 IPDQHQLPPHIAHIYLLFCHMEEDPMPILEKLLHLKSVELRRKAFIGRRMVC-SKGGFPQ 811

Query:   169 LKILHLKSMLWLEEWTMGAGAMPKLESLILNPCAYLRKLPEELWRIKSLCKLELHWPQPE 228
             L+ L +     LEEW +  G+MP L  LI++ C  L +LP+ L  + SL +L++   + E
Sbjct:   812 LRALQISEQSELEEWIVEEGSMPCLRDLIIHSCEKLEELPDGLKYVTSLKELKIEGMKRE 871

Query:   229 LRQRLRAFEDMEWRYDIQLYP 249
              +++L   ED    Y +Q  P
Sbjct:   872 WKEKLVG-EDY---YKVQHIP 888

GO:0006952 "defense response" evidence=IEA;ISS

GO:0043531 "ADP binding" evidence=IEA

GO:0005886 "plasma membrane" evidence=IDA

TAIR|locus:2176486 RPP8 "RECOGNITION OF PERONOSPORA PARASITICA 8" [Arabidopsis thaliana (taxid:3702)]

 Score = 205 (77.2 bits), Expect = 2.6e-15, P = 2.6e-15
 Identities = 44/125 (35%), Positives = 74/125 (59%)

Query:   109 ILSEYKFPPSLTQLSLSNTELIEDPMPTLEKLPHLEVLKLKQNSYFERKLACVGCSSFPQ 168
             I  +++FPP L  L L    + EDPMP LEKL HL+ ++L + ++   ++ C     FPQ
Sbjct:   762 IPDQHQFPPHLVHLFLIYCGMEEDPMPILEKLLHLKSVRLARKAFLGSRMVC-SKGGFPQ 820

Query:   169 LKILHLKSMLWLEEWTMGAGAMPKLESLILNPCAYLRKLPEELWRIKSLCKLELHWPQPE 228
             L ++ +     LEEW +  G+MP L +L ++ C  L++LP+ L  I SL +L++   + E
Sbjct:   821 LCVIEISKESELEEWIVEEGSMPCLRTLTIDDCKKLKELPDGLKYITSLKELKIEGMKRE 880

Query:   229 LRQRL 233
              +++L
Sbjct:   881 WKEKL 885

GO:0006952 "defense response" evidence=IEA;ISS;TAS

GO:0043531 "ADP binding" evidence=IEA

GO:0000166 "nucleotide binding" evidence=ISS

GO:0009416 "response to light stimulus" evidence=IMP

GO:0051607 "defense response to virus" evidence=IMP

GO:0005886 "plasma membrane" evidence=IDA

GO:0009626 "plant-type hypersensitive response" evidence=IMP

GO:0051707 "response to other organism" evidence=IMP

TAIR|locus:2152536 AT5G48620 [Arabidopsis thaliana (taxid:3702)]

 Score = 203 (76.5 bits), Expect = 4.3e-15, P = 4.3e-15
 Identities = 45/125 (36%), Positives = 73/125 (58%)

Query:   109 ILSEYKFPPSLTQLSLSNTELIEDPMPTLEKLPHLEVLKLKQNSYFERKLACVGCSSFPQ 168
             I  +++FPP L  + L +  + EDPMP LEKL HL+ + L   ++  R++ C     FPQ
Sbjct:   762 IPDQHQFPPHLAHIHLVHCVMKEDPMPILEKLLHLKSVALSYGAFIGRRVVC-SKGGFPQ 820

Query:   169 LKILHLKSMLWLEEWTMGAGAMPKLESLILNPCAYLRKLPEELWRIKSLCKLELHWPQPE 228
             L  L +     LEEW +  G+MP L +L ++ C  L++LP+ L  I SL +L++   + E
Sbjct:   821 LCALGISGESELEEWIVEEGSMPCLRTLTIHDCEKLKELPDGLKYITSLKELKIREMKRE 880

Query:   229 LRQRL 233
              +++L
Sbjct:   881 WKEKL 885

GO:0006952 "defense response" evidence=IEA;ISS

GO:0043531 "ADP binding" evidence=IEA

GO:0005886 "plasma membrane" evidence=IDA

TAIR|locus:2025916 AT1G59780 "AT1G59780" [Arabidopsis thaliana (taxid:3702)]

 Score = 201 (75.8 bits), Expect = 7.0e-15, P = 7.0e-15
 Identities = 68/217 (31%), Positives = 106/217 (48%)

Query:    40 LKNLIFISALHPSSCTPDILSRLPTVQTLRISGDLSHYHSGVSKSXXXXXXXXXXXXANQ 99
             L+ LI  S    S      +++L T+Q L ISG+  H  +  S               ++
Sbjct:   671 LETLINFSTKDSSVTDLHRMTKLRTLQIL-ISGEGLHMETLSSALSMLGHLEDLTVTPSE 729

Query:   100 GKMW-----QITRMILSEYK-FPPSLTQLSLSNTELIEDPMPTLEKLPHLEVLKLKQNSY 153
               +       I R +L + + FP  LT +SL    L EDPMPTLEKL  L+V+ L  N+Y
Sbjct:   730 NSVQFKHPKLIYRPMLPDVQHFPSHLTTISLVYCFLEEDPMPTLEKLLQLKVVSLWYNAY 789

Query:   154 FERKLACVGCSSFPQLKILHLKSMLWLEEWTMGAGAMPKLESLILNPCAYLRKLPEELWR 213
               R++ C G   FP L  L +  +  LEEW +  G+MP L +L +  C  L+++P+ L  
Sbjct:   790 VGRRMVCTG-GGFPPLHRLEIWGLDALEEWIVEEGSMPLLHTLHIVDCKKLKEIPDGLRF 848

Query:   214 IKSLCKLELHWPQPELRQRL-RAFEDMEWRYDIQLYP 249
             I SL +L +   +   ++++ +  ED    Y +Q  P
Sbjct:   849 ISSLKELAIRTNEKVFQKKVSKGGEDY---YKMQHVP 882

GO:0005575 "cellular_component" evidence=ND

GO:0006952 "defense response" evidence=IEA;ISS

GO:0043531 "ADP binding" evidence=IEA

TAIR|locus:504956182 AT1G58848 [Arabidopsis thaliana (taxid:3702)]

 Score = 199 (75.1 bits), Expect = 1.4e-14, P = 1.4e-14
 Identities = 49/118 (41%), Positives = 68/118 (57%)

Query:   110 LSEYKFPPSLTQLSLSNTELIEDPMPTLEKLPHLEVLKLKQNSYFERKLACVGCSSFPQL 169
             L +   P  LT +SL    L EDPMPTLE+L HL+ L+L   S+  R + C G S FPQL
Sbjct:   866 LPDEHLPSHLTSISLFFCCLEEDPMPTLERLVHLKELQLLFRSFSGRIMVCAG-SGFPQL 924

Query:   170 KILHLKSMLWLEEWTMGAGAMPKLESLILNPCAYLRKLPEELWRIKSLCKLELH-WPQ 226
               L L  +  LEEW +  G+MP+L +L +  C  L+KLP    ++++L   EL  W +
Sbjct:   925 HKLKLSELDGLEEWIVEDGSMPQLHTLEIRRCPKLKKLPNGFPQLQNLELNELEEWEE 982

GO:0006952 "defense response" evidence=IEA;ISS

GO:0043531 "ADP binding" evidence=IEA

TAIR|locus:2826978 AT1G59218 [Arabidopsis thaliana (taxid:3702)]

 Score = 199 (75.1 bits), Expect = 1.4e-14, P = 1.4e-14
 Identities = 49/118 (41%), Positives = 68/118 (57%)

Query:   110 LSEYKFPPSLTQLSLSNTELIEDPMPTLEKLPHLEVLKLKQNSYFERKLACVGCSSFPQL 169
             L +   P  LT +SL    L EDPMPTLE+L HL+ L+L   S+  R + C G S FPQL
Sbjct:   866 LPDEHLPSHLTSISLFFCCLEEDPMPTLERLVHLKELQLLFRSFSGRIMVCAG-SGFPQL 924

Query:   170 KILHLKSMLWLEEWTMGAGAMPKLESLILNPCAYLRKLPEELWRIKSLCKLELH-WPQ 226
               L L  +  LEEW +  G+MP+L +L +  C  L+KLP    ++++L   EL  W +
Sbjct:   925 HKLKLSELDGLEEWIVEDGSMPQLHTLEIRRCPKLKKLPNGFPQLQNLELNELEEWEE 982

GO:0006952 "defense response" evidence=IEA;ISS

GO:0043531 "ADP binding" evidence=IEA

TAIR|locus:2037639 AT1G58390 "AT1G58390" [Arabidopsis thaliana (taxid:3702)]

 Score = 196 (74.1 bits), Expect = 2.4e-14, P = 2.4e-14
 Identities = 46/103 (44%), Positives = 62/103 (60%)

Query:   115 FPPSLTQLSLSNTELIEDPMPTLEKLPHLEVLKLKQNSYFERKLACVGCSSFPQLKILHL 174
             FP  LT + LS   L EDPMP LEKL HL+ + L + SY  R++ C G   FPQLK L +
Sbjct:   769 FPSRLTFVKLSECGLEEDPMPILEKLLHLKGVILLKGSYCGRRMVCSG-GGFPQLKKLEI 827

Query:   175 KSMLWLEEWTMGAGAMPKLESLILNPCAYLRKLPEELWRIKSL 217
               +   EEW +  G+MP LE+L +  C  L+++P+ L  I SL
Sbjct:   828 VGLNKWEEWLVEEGSMPLLETLSILDCEELKEIPDGLRFIYSL 870

GO:0005575 "cellular_component" evidence=ND

GO:0006952 "defense response" evidence=IEA;ISS

GO:0043531 "ADP binding" evidence=IEA

TAIR|locus:504956186 AT1G58602 [Arabidopsis thaliana (taxid:3702)]

 Score = 184 (69.8 bits), Expect = 6.2e-13, P = 6.2e-13
 Identities = 53/149 (35%), Positives = 78/149 (52%)

Query:   102 MWQITRMILSEYKFPPSLTQLSLSNTELIEDPMPTLEKLPHLEVLKLKQNSYFERKLACV 161
             +W   ++   E  FP  LT + L    + EDPM  LEKL HL+ + L Q S+  +++ C 
Sbjct:   994 IWHCPKLP-GEQHFPSHLTTVFLLGMYVEEDPMRILEKLLHLKNVSLFQ-SFSGKRMVCS 1051

Query:   162 GCSSFPQLKILHLKSMLWLEEWTMGAGAMPKLESLILNPCAYLRKLPEELWRIKSLCKLE 221
             G   FPQL+ L ++ + W EEW +  G+MP L +L +  C  L++LP+ L  I SL  L 
Sbjct:  1052 G-GGFPQLQKLSIREIEW-EEWIVEQGSMPLLHTLYIGVCPNLKELPDGLRFIYSLKNLI 1109

Query:   222 LHWPQPELRQRLRAFEDMEWRYDIQLYPS 250
             +       R + R  E  E  Y +Q  PS
Sbjct:  1110 V-----SKRWKKRLSEGGEDYYKVQHIPS 1133

GO:0006952 "defense response" evidence=IEA;ISS

GO:0043531 "ADP binding" evidence=IEA

TAIR|locus:504956184 AT1G58807 "AT1G58807" [Arabidopsis thaliana (taxid:3702)]

 Score = 178 (67.7 bits), Expect = 2.4e-12, P = 2.4e-12
 Identities = 52/149 (34%), Positives = 80/149 (53%)

Query:   104 QITRMI--LSEYKFPPSLTQLSLSNTELIEDPMPTLEKLPHLEVLKLKQNSYFERKLACV 161
             Q+ R +  L +   P  LT +SL    L +DP+PTL +L +L+ L+L   ++  R + C 
Sbjct:   850 QVCRKLKQLPDEHLPSHLTSISLFFCCLEKDPLPTLGRLVYLKELQLGFRTFSGRIMVCS 909

Query:   162 GCSSFPQLKILHLKSMLWLEEWTMGAGAMPKLESLILNPCAYLRKLPEELWRIKSLCKLE 221
             G   FPQL+ L +  +   EEW +  G+MP L +L ++ C  L+KLP+ L  I SL  L+
Sbjct:   910 G-GGFPQLQKLSIYRLEEWEEWIVEQGSMPFLHTLYIDDCPKLKKLPDGLQFIYSLKNLK 968

Query:   222 LHWPQPELRQRLRAFEDMEWRYDIQLYPS 250
             +       ++RL   E  E  Y +Q  PS
Sbjct:   969 I---SERWKERLS--EGGEEYYKVQHIPS 992

GO:0005575 "cellular_component" evidence=ND

GO:0006952 "defense response" evidence=IEA;ISS

GO:0043531 "ADP binding" evidence=IEA

TAIR|locus:2827038 AT1G59124 "AT1G59124" [Arabidopsis thaliana (taxid:3702)]

 Score = 178 (67.7 bits), Expect = 2.4e-12, P = 2.4e-12
 Identities = 52/149 (34%), Positives = 80/149 (53%)

Query:   104 QITRMI--LSEYKFPPSLTQLSLSNTELIEDPMPTLEKLPHLEVLKLKQNSYFERKLACV 161
             Q+ R +  L +   P  LT +SL    L +DP+PTL +L +L+ L+L   ++  R + C 
Sbjct:   850 QVCRKLKQLPDEHLPSHLTSISLFFCCLEKDPLPTLGRLVYLKELQLGFRTFSGRIMVCS 909

Query:   162 GCSSFPQLKILHLKSMLWLEEWTMGAGAMPKLESLILNPCAYLRKLPEELWRIKSLCKLE 221
             G   FPQL+ L +  +   EEW +  G+MP L +L ++ C  L+KLP+ L  I SL  L+
Sbjct:   910 G-GGFPQLQKLSIYRLEEWEEWIVEQGSMPFLHTLYIDDCPKLKKLPDGLQFIYSLKNLK 968

Query:   222 LHWPQPELRQRLRAFEDMEWRYDIQLYPS 250
             +       ++RL   E  E  Y +Q  PS
Sbjct:   969 I---SERWKERLS--EGGEEYYKVQHIPS 992

GO:0005575 "cellular_component" evidence=ND

GO:0006952 "defense response" evidence=IEA;ISS

GO:0043531 "ADP binding" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	252
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	99.85
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	99.82
KOG0444	1255	consensus Cytoskeletal regulator Flightless-I (con	99.73
KOG0444	1255	consensus Cytoskeletal regulator Flightless-I (con	99.72
PLN03210	1153	Resistant to P. syringae 6; Provisional	99.72
PLN03210	1153	Resistant to P. syringae 6; Provisional	99.68
KOG4194	873	consensus Membrane glycoprotein LIG-1 [Signal tran	99.65
KOG0472	565	consensus Leucine-rich repeat protein [Function un	99.63
KOG4194	873	consensus Membrane glycoprotein LIG-1 [Signal tran	99.6
KOG0472	565	consensus Leucine-rich repeat protein [Function un	99.53
KOG0617	264	consensus Ras suppressor protein (contains leucine	99.49
KOG0618	1081	consensus Serine/threonine phosphatase 2C containi	99.47
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	99.46
KOG0617	264	consensus Ras suppressor protein (contains leucine	99.45
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	99.4
KOG4237	498	consensus Extracellular matrix protein slit, conta	99.39
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	99.36
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	99.35
KOG0618	1081	consensus Serine/threonine phosphatase 2C containi	99.32
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	99.31
KOG2120	419	consensus SCF ubiquitin ligase, Skp2 component [Po	99.12
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	99.05
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	99.02
KOG3207	505	consensus Beta-tubulin folding cofactor E [Posttra	98.99
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	98.99
KOG0532	722	consensus Leucine-rich repeat (LRR) protein, conta	98.96
KOG4237	498	consensus Extracellular matrix protein slit, conta	98.93
KOG3207	505	consensus Beta-tubulin folding cofactor E [Posttra	98.89
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	98.88
KOG0532	722	consensus Leucine-rich repeat (LRR) protein, conta	98.87
KOG1259	490	consensus Nischarin, modulator of integrin alpha5	98.82
KOG4658	889	consensus Apoptotic ATPase [Signal transduction me	98.79
KOG1909	382	consensus Ran GTPase-activating protein [RNA proce	98.78
KOG1909	382	consensus Ran GTPase-activating protein [RNA proce	98.76
KOG2120	419	consensus SCF ubiquitin ligase, Skp2 component [Po	98.75
KOG4658	889	consensus Apoptotic ATPase [Signal transduction me	98.73
KOG1259	490	consensus Nischarin, modulator of integrin alpha5	98.72
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	98.66
KOG4341	483	consensus F-box protein containing LRR [General fu	98.64
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	98.42
PLN03150	623	hypothetical protein; Provisional	98.4
PLN03150	623	hypothetical protein; Provisional	98.4
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	98.26
KOG2982	418	consensus Uncharacterized conserved protein [Funct	98.17
KOG0531	414	consensus Protein phosphatase 1, regulatory subuni	98.1
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	98.08
KOG1859	1096	consensus Leucine-rich repeat proteins [General fu	98.05
KOG0531	414	consensus Protein phosphatase 1, regulatory subuni	98.01
KOG1644	233	consensus U2-associated snRNP A' protein [RNA proc	97.94
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	97.9
COG5238	388	RNA1 Ran GTPase-activating protein (RanGAP) involv	97.82
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	97.8
PRK15386	426	type III secretion protein GogB; Provisional	97.77
KOG4341	483	consensus F-box protein containing LRR [General fu	97.76
KOG1859	1096	consensus Leucine-rich repeat proteins [General fu	97.75
KOG2982	418	consensus Uncharacterized conserved protein [Funct	97.69
KOG1644	233	consensus U2-associated snRNP A' protein [RNA proc	97.63
PRK15386	426	type III secretion protein GogB; Provisional	97.6
KOG4579	177	consensus Leucine-rich repeat (LRR) protein associ	97.46
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	97.42
KOG2123	388	consensus Uncharacterized conserved protein [Funct	97.39
COG5238	388	RNA1 Ran GTPase-activating protein (RanGAP) involv	97.33
KOG1947	482	consensus Leucine rich repeat proteins, some prote	97.27
KOG2739	260	consensus Leucine-rich acidic nuclear protein [Cel	97.13
KOG1947	482	consensus Leucine rich repeat proteins, some prote	97.09
KOG4579	177	consensus Leucine-rich repeat (LRR) protein associ	97.0
KOG2739	260	consensus Leucine-rich acidic nuclear protein [Cel	96.91
KOG2123	388	consensus Uncharacterized conserved protein [Funct	96.78
KOG3864	221	consensus Uncharacterized conserved protein [Funct	96.3
KOG3864	221	consensus Uncharacterized conserved protein [Funct	96.1
PF00560	22	LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le	94.73
PF13306	129	LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_	94.55
PF13504	17	LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OO	94.53
PF13306	129	LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_	92.73
smart00370	26	LRR Leucine-rich repeats, outliers.	84.67
smart00369	26	LRR_TYP Leucine-rich repeats, typical (most popula	84.67
PF13516	24	LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RI	83.35
smart00367	26	LRR_CC Leucine-rich repeat - CC (cysteine-containi	82.51

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=99.85  E-value=6.4e-21  Score=179.16  Aligned_cols=211  Identities=21%  Similarity=0.246  Sum_probs=148.5

Q ss_pred             CCcc-ccchHHHhhccccEEEecCCCCCCCCCcccCCCCCCcEecccCCCCC---chhhcCCCCCccEEEeeccCCcccc
Q 036414            4 SYID-HSSEDIWMMQKLMHLNFGSITLPAPPKNYSSSLKNLIFISALHPSSC---TPDILSRLPTVQTLRISGDLSHYHS   79 (252)
Q Consensus         4 ~~l~-~lp~~i~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~~l~~~~~---~~~~l~~l~~L~~L~l~~~~~~~~~   79 (252)
                      +.+. .+|.+++.+++|++|++++|.+....|..+.++++|++|+ ++.|..   .|..++++++|+.|++++|.  ...
T Consensus       150 n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~-L~~n~l~~~~p~~l~~l~~L~~L~L~~n~--l~~  226 (968)
T PLN00113        150 NMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLT-LASNQLVGQIPRELGQMKSLKWIYLGYNN--LSG  226 (968)
T ss_pred             CcccccCChHHhcCCCCCEEECccCcccccCChhhhhCcCCCeee-ccCCCCcCcCChHHcCcCCccEEECcCCc--cCC
Confidence            4443 6677888888888888887777777788888888888888 777765   57778888888888888876  556


Q ss_pred             chhHhhhccCCCCeEEeeeccchhHHHHhhc-cccCCCCCCceEEeeecccCCCCchhhhcCCCCceEEeccCCccCcee
Q 036414           80 GVSKSLCELHKLECLKLANQGKMWQITRMIL-SEYKFPPSLTQLSLSNTELIEDPMPTLEKLPHLEVLKLKQNSYFERKL  158 (252)
Q Consensus        80 ~~~~~l~~l~~L~~L~l~~~~~~~~~~~l~~-~~~~~~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~  158 (252)
                      .+|..+.++++|++|++.+|.-.+.    +| .+..+ ++|++|++++|.+.+..|..++.+++|++|++++|.+.+...
T Consensus       227 ~~p~~l~~l~~L~~L~L~~n~l~~~----~p~~l~~l-~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p  301 (968)
T PLN00113        227 EIPYEIGGLTSLNHLDLVYNNLTGP----IPSSLGNL-KNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIP  301 (968)
T ss_pred             cCChhHhcCCCCCEEECcCceeccc----cChhHhCC-CCCCEEECcCCeeeccCchhHhhccCcCEEECcCCeeccCCC
Confidence            7777788888888888887432234    55 66666 777777777777766667777777777777777666544322


Q ss_pred             eecCCCCCccccEEEecCCcccc-ceeccccccccccceeeccCCCCCCChHHHHhccccceeecccC
Q 036414          159 ACVGCSSFPQLKILHLKSMLWLE-EWTMGAGAMPKLESLILNPCAYLRKLPEELWRIKSLCKLELHWP  225 (252)
Q Consensus       159 ~~~~~~~~~~L~~L~l~~~~~l~-~~~~~~~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~l~~~  225 (252)
                       .. ..++++|+.|++++|. +. .++..++.+++|+.|++++|.....+|..+..+++|+.|+++++
T Consensus       302 -~~-~~~l~~L~~L~l~~n~-~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~Ls~n  366 (968)
T PLN00113        302 -EL-VIQLQNLEILHLFSNN-FTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTN  366 (968)
T ss_pred             -hh-HcCCCCCcEEECCCCc-cCCcCChhHhcCCCCCEEECcCCCCcCcCChHHhCCCCCcEEECCCC
Confidence             12 4566777777777776 43 34555566677777777777666566666666667777776654

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=99.82  E-value=4.5e-20  Score=173.46  Aligned_cols=208  Identities=23%  Similarity=0.247  Sum_probs=134.3

Q ss_pred             cccchHHHhhccccEEEecCCCCCCCCCcccCCCCCCcEecccCCCCC---chhhcCCCCCccEEEeeccCCccccchhH
Q 036414            7 DHSSEDIWMMQKLMHLNFGSITLPAPPKNYSSSLKNLIFISALHPSSC---TPDILSRLPTVQTLRISGDLSHYHSGVSK   83 (252)
Q Consensus         7 ~~lp~~i~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~~l~~~~~---~~~~l~~l~~L~~L~l~~~~~~~~~~~~~   83 (252)
                      +.+|.+++++++|++|++++|.+...+|..+.++++|++|+ ++.+..   .|..++.+++|++|++++|.  ....+|.
T Consensus       178 ~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~-L~~n~l~~~~p~~l~~l~~L~~L~L~~n~--l~~~~p~  254 (968)
T PLN00113        178 GKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIY-LGYNNLSGEIPYEIGGLTSLNHLDLVYNN--LTGPIPS  254 (968)
T ss_pred             ccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEE-CcCCccCCcCChhHhcCCCCCEEECcCce--eccccCh
Confidence            46788888888888888888877777888888888888888 777765   66778888888888888886  5556777


Q ss_pred             hhhccCCCCeEEeeeccchhHHHHhhc-cccCCCCCCceEEeeecccCCCCchhhhcCCCCceEEeccCCccCceeeecC
Q 036414           84 SLCELHKLECLKLANQGKMWQITRMIL-SEYKFPPSLTQLSLSNTELIEDPMPTLEKLPHLEVLKLKQNSYFERKLACVG  162 (252)
Q Consensus        84 ~l~~l~~L~~L~l~~~~~~~~~~~l~~-~~~~~~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~  162 (252)
                      .+.++++|+.|++.++.-.+.    +| .+..+ ++|++|++++|.+.+..|..+..+++|+.|++++|.+.+.... . 
T Consensus       255 ~l~~l~~L~~L~L~~n~l~~~----~p~~l~~l-~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~-~-  327 (968)
T PLN00113        255 SLGNLKNLQYLFLYQNKLSGP----IPPSIFSL-QKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIPV-A-  327 (968)
T ss_pred             hHhCCCCCCEEECcCCeeecc----CchhHhhc-cCcCEEECcCCeeccCCChhHcCCCCCcEEECCCCccCCcCCh-h-
Confidence            778888888888877322233    44 55555 6666666666666655566666666666666665554432211 2 


Q ss_pred             CCCCccccEEEecCCcccc-ceeccccccc------------------------cccceeeccCCCCCCChHHHHhcccc
Q 036414          163 CSSFPQLKILHLKSMLWLE-EWTMGAGAMP------------------------KLESLILNPCAYLRKLPEELWRIKSL  217 (252)
Q Consensus       163 ~~~~~~L~~L~l~~~~~l~-~~~~~~~~l~------------------------~L~~L~l~~~~~~~~~p~~l~~l~~L  217 (252)
                      ...+++|+.|++++|. +. .++...+.++                        +|+.|++++|.....+|..+..+++|
T Consensus       328 ~~~l~~L~~L~L~~n~-l~~~~p~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~L  406 (968)
T PLN00113        328 LTSLPRLQVLQLWSNK-FSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKSLGACRSL  406 (968)
T ss_pred             HhcCCCCCEEECcCCC-CcCcCChHHhCCCCCcEEECCCCeeEeeCChhHhCcCCCCEEECcCCEecccCCHHHhCCCCC
Confidence            3445555555555555 32 3333344444                        45555555554444555556666666


Q ss_pred             ceeecccC
Q 036414          218 CKLELHWP  225 (252)
Q Consensus       218 ~~L~l~~~  225 (252)
                      +.|++.++
T Consensus       407 ~~L~L~~n  414 (968)
T PLN00113        407 RRVRLQDN  414 (968)
T ss_pred             CEEECcCC
Confidence            66666655

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]

Probab=99.73  E-value=1.4e-19  Score=154.15  Aligned_cols=230  Identities=20%  Similarity=0.197  Sum_probs=150.9

Q ss_pred             ccchHHHhhccccEEEecCCCCCCCCCcccCCCCCCcEecccCCCCC--chhh-cCCCCCccEEEeeccCCccccchhHh
Q 036414            8 HSSEDIWMMQKLMHLNFGSITLPAPPKNYSSSLKNLIFISALHPSSC--TPDI-LSRLPTVQTLRISGDLSHYHSGVSKS   84 (252)
Q Consensus         8 ~lp~~i~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~~l~~~~~--~~~~-l~~l~~L~~L~l~~~~~~~~~~~~~~   84 (252)
                      -+|..|.++..|+.||++.|.+ .+.|..+...+++-+|. +++|++  +|.. +-+++.|-.|+|+.|   ....+|+.
T Consensus        94 GiP~diF~l~dLt~lDLShNqL-~EvP~~LE~AKn~iVLN-LS~N~IetIPn~lfinLtDLLfLDLS~N---rLe~LPPQ  168 (1255)
T KOG0444|consen   94 GIPTDIFRLKDLTILDLSHNQL-REVPTNLEYAKNSIVLN-LSYNNIETIPNSLFINLTDLLFLDLSNN---RLEMLPPQ  168 (1255)
T ss_pred             CCCchhcccccceeeecchhhh-hhcchhhhhhcCcEEEE-cccCccccCCchHHHhhHhHhhhccccc---hhhhcCHH
Confidence            3566666666666666664433 34555555555555665 555554  3333 223444445555555   24444444


Q ss_pred             hhccCCCCeEEeeec------------------------cc-hhHHHHhhc-cccCCCCCCceEEeeecccCCCCchhhh
Q 036414           85 LCELHKLECLKLANQ------------------------GK-MWQITRMIL-SEYKFPPSLTQLSLSNTELIEDPMPTLE  138 (252)
Q Consensus        85 l~~l~~L~~L~l~~~------------------------~~-~~~~~~l~~-~~~~~~~~L~~l~l~~~~~~~~~~~~l~  138 (252)
                      +..+.+|+.|.+++|                        .. +.+    +| .+-.+ .||..+|++.|.+. ..|..+.
T Consensus       169 ~RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N----~Ptsld~l-~NL~dvDlS~N~Lp-~vPecly  242 (1255)
T KOG0444|consen  169 IRRLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDN----IPTSLDDL-HNLRDVDLSENNLP-IVPECLY  242 (1255)
T ss_pred             HHHHhhhhhhhcCCChhhHHHHhcCccchhhhhhhcccccchhhc----CCCchhhh-hhhhhccccccCCC-cchHHHh
Confidence            444444555544442                        11 133    67 77777 88999999988887 6788888


Q ss_pred             cCCCCceEEeccCCccCceeeecCCCCCccccEEEecCCccccceeccccccccccceeeccCCC-CCCChHHHHhcccc
Q 036414          139 KLPHLEVLKLKQNSYFERKLACVGCSSFPQLKILHLKSMLWLEEWTMGAGAMPKLESLILNPCAY-LRKLPEELWRIKSL  217 (252)
Q Consensus       139 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~~~~-~~~~p~~l~~l~~L  217 (252)
                      .+++|+.|++++|.++.  .... .+.+.+|++|+++.|+ ++.+|.....+++|+.|.+.+|.. .+++|++|+.+.+|
T Consensus       243 ~l~~LrrLNLS~N~ite--L~~~-~~~W~~lEtLNlSrNQ-Lt~LP~avcKL~kL~kLy~n~NkL~FeGiPSGIGKL~~L  318 (1255)
T KOG0444|consen  243 KLRNLRRLNLSGNKITE--LNMT-EGEWENLETLNLSRNQ-LTVLPDAVCKLTKLTKLYANNNKLTFEGIPSGIGKLIQL  318 (1255)
T ss_pred             hhhhhheeccCcCceee--eecc-HHHHhhhhhhccccch-hccchHHHhhhHHHHHHHhccCcccccCCccchhhhhhh
Confidence            99999999999998876  3333 6678899999999999 888888888999999999988874 45789999988888


Q ss_pred             ceeecccCC-----HHHHHHHHhhccCcceeEeeeccCCC
Q 036414          218 CKLELHWPQ-----PELRQRLRAFEDMEWRYDIQLYPSGI  252 (252)
Q Consensus       218 ~~L~l~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~  252 (252)
                      +++..++..     +.+.+....+.-..+.+++-.+|..|
T Consensus       319 evf~aanN~LElVPEglcRC~kL~kL~L~~NrLiTLPeaI  358 (1255)
T KOG0444|consen  319 EVFHAANNKLELVPEGLCRCVKLQKLKLDHNRLITLPEAI  358 (1255)
T ss_pred             HHHHhhccccccCchhhhhhHHHHHhcccccceeechhhh
Confidence            888777653     22222222212455566666666544

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]

Probab=99.72  E-value=2e-19  Score=153.27  Aligned_cols=159  Identities=25%  Similarity=0.292  Sum_probs=121.8

Q ss_pred             chhhcCCCCCccEEEeeccCCccccchhHhhhccCCCCeEEeeeccchhHHHHhhc-cccCCCCCCceEEeeecccCCCC
Q 036414           55 TPDILSRLPTVQTLRISGDLSHYHSGVSKSLCELHKLECLKLANQGKMWQITRMIL-SEYKFPPSLTQLSLSNTELIEDP  133 (252)
Q Consensus        55 ~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~l~~-~~~~~~~~L~~l~l~~~~~~~~~  133 (252)
                      +|..+..++||+.++++.|   ....+|+.+.++++|+.|++++ +.+.+    +. ....+ .+|+.|+++.|+++ ..
T Consensus       214 ~Ptsld~l~NL~dvDlS~N---~Lp~vPecly~l~~LrrLNLS~-N~ite----L~~~~~~W-~~lEtLNlSrNQLt-~L  283 (1255)
T KOG0444|consen  214 IPTSLDDLHNLRDVDLSEN---NLPIVPECLYKLRNLRRLNLSG-NKITE----LNMTEGEW-ENLETLNLSRNQLT-VL  283 (1255)
T ss_pred             CCCchhhhhhhhhcccccc---CCCcchHHHhhhhhhheeccCc-Cceee----eeccHHHH-hhhhhhccccchhc-cc
Confidence            5555666677777777776   5666777777777777777777 55544    33 44444 67788888888877 67


Q ss_pred             chhhhcCCCCceEEeccCCccCceeeecCCCCCccccEEEecCCccccceeccccccccccceeeccCCCCCCChHHHHh
Q 036414          134 MPTLEKLPHLEVLKLKQNSYFERKLACVGCSSFPQLKILHLKSMLWLEEWTMGAGAMPKLESLILNPCAYLRKLPEELWR  213 (252)
Q Consensus       134 ~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~~~~~~~~p~~l~~  213 (252)
                      |.++..+++|+.|.+..|..+-+-++. |.+.+..|+.+...+|. ++-+|..++.|++|+.|.++.|... .+|++|.-
T Consensus       284 P~avcKL~kL~kLy~n~NkL~FeGiPS-GIGKL~~Levf~aanN~-LElVPEglcRC~kL~kL~L~~NrLi-TLPeaIHl  360 (1255)
T KOG0444|consen  284 PDAVCKLTKLTKLYANNNKLTFEGIPS-GIGKLIQLEVFHAANNK-LELVPEGLCRCVKLQKLKLDHNRLI-TLPEAIHL  360 (1255)
T ss_pred             hHHHhhhHHHHHHHhccCcccccCCcc-chhhhhhhHHHHhhccc-cccCchhhhhhHHHHHhccccccee-echhhhhh
Confidence            888888888888888777765444553 37888889988888888 8888888899999999999887764 78999988


Q ss_pred             ccccceeecccCC
Q 036414          214 IKSLCKLELHWPQ  226 (252)
Q Consensus       214 l~~L~~L~l~~~~  226 (252)
                      ++.|++|++...|
T Consensus       361 L~~l~vLDlreNp  373 (1255)
T KOG0444|consen  361 LPDLKVLDLRENP  373 (1255)
T ss_pred             cCCcceeeccCCc
Confidence            9999999998765

>PLN03210 Resistant to P

Probab=99.72  E-value=4.6e-17  Score=154.65  Aligned_cols=218  Identities=19%  Similarity=0.211  Sum_probs=134.5

Q ss_pred             CCCCCccccchHHHhhccccEEEecCCCCCCCCCcccCCCCCCcEecccCCCCC---chhhcCCCCCccEEEeeccCCcc
Q 036414            1 MPSSYIDHSSEDIWMMQKLMHLNFGSITLPAPPKNYSSSLKNLIFISALHPSSC---TPDILSRLPTVQTLRISGDLSHY   77 (252)
Q Consensus         1 ~~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~~l~~~~~---~~~~l~~l~~L~~L~l~~~~~~~   77 (252)
                      |+++.++.+|.++..+++|+.|+++++.....+|. +..+++|+.|+ +..|..   +|..++.+++|+.|++++|.  .
T Consensus       618 L~~s~l~~L~~~~~~l~~Lk~L~Ls~~~~l~~ip~-ls~l~~Le~L~-L~~c~~L~~lp~si~~L~~L~~L~L~~c~--~  693 (1153)
T PLN03210        618 MQGSKLEKLWDGVHSLTGLRNIDLRGSKNLKEIPD-LSMATNLETLK-LSDCSSLVELPSSIQYLNKLEDLDMSRCE--N  693 (1153)
T ss_pred             CcCccccccccccccCCCCCEEECCCCCCcCcCCc-cccCCcccEEE-ecCCCCccccchhhhccCCCCEEeCCCCC--C
Confidence            45667777777777888888888886665555654 67777888888 666543   66667777888888887775  4


Q ss_pred             ccchhHhhhccCCCCeEEeeeccchhHH----HHh------------hc-cc----------------------------
Q 036414           78 HSGVSKSLCELHKLECLKLANQGKMWQI----TRM------------IL-SE----------------------------  112 (252)
Q Consensus        78 ~~~~~~~l~~l~~L~~L~l~~~~~~~~~----~~l------------~~-~~----------------------------  112 (252)
                      ...+|..+ .+++|+.|++.+|..+..+    .++            +| .+                            
T Consensus       694 L~~Lp~~i-~l~sL~~L~Lsgc~~L~~~p~~~~nL~~L~L~~n~i~~lP~~~~l~~L~~L~l~~~~~~~l~~~~~~l~~~  772 (1153)
T PLN03210        694 LEILPTGI-NLKSLYRLNLSGCSRLKSFPDISTNISWLDLDETAIEEFPSNLRLENLDELILCEMKSEKLWERVQPLTPL  772 (1153)
T ss_pred             cCccCCcC-CCCCCCEEeCCCCCCccccccccCCcCeeecCCCccccccccccccccccccccccchhhccccccccchh
Confidence            55555443 4566666666554322110    000            11 00                            


Q ss_pred             -cCCCCCCceEEeeecccCCCCchhhhcCCCCceEEeccCCccCceeeecCCCCCccccEEEecCCcc------------
Q 036414          113 -YKFPPSLTQLSLSNTELIEDPMPTLEKLPHLEVLKLKQNSYFERKLACVGCSSFPQLKILHLKSMLW------------  179 (252)
Q Consensus       113 -~~~~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~------------  179 (252)
                       ...+++|+.|++++|......|..++.+++|+.|++++|......+.   ...+++|+.|++++|..            
T Consensus       773 ~~~~~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~---~~~L~sL~~L~Ls~c~~L~~~p~~~~nL~  849 (1153)
T PLN03210        773 MTMLSPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPT---GINLESLESLDLSGCSRLRTFPDISTNIS  849 (1153)
T ss_pred             hhhccccchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCC---CCCccccCEEECCCCCccccccccccccC
Confidence             01124666777777665556777788888888888877643221111   11344455555544433            


Q ss_pred             --------ccceeccccccccccceeeccCCCCCCChHHHHhccccceeecccCC
Q 036414          180 --------LEEWTMGAGAMPKLESLILNPCAYLRKLPEELWRIKSLCKLELHWPQ  226 (252)
Q Consensus       180 --------l~~~~~~~~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~l~~~~  226 (252)
                              ++++|..++.+++|+.|++.+|+.+..+|..+..+++|+.+++.+|.
T Consensus       850 ~L~Ls~n~i~~iP~si~~l~~L~~L~L~~C~~L~~l~~~~~~L~~L~~L~l~~C~  904 (1153)
T PLN03210        850 DLNLSRTGIEEVPWWIEKFSNLSFLDMNGCNNLQRVSLNISKLKHLETVDFSDCG  904 (1153)
T ss_pred             EeECCCCCCccChHHHhcCCCCCEEECCCCCCcCccCcccccccCCCeeecCCCc
Confidence                    44445555667777777777777777777666677777777777775

syringae 6; Provisional

>PLN03210 Resistant to P

Probab=99.68  E-value=2.1e-16  Score=150.18  Aligned_cols=208  Identities=22%  Similarity=0.196  Sum_probs=149.8

Q ss_pred             CCccccchHHHhhccccEEEecCCCCCCCCCcccCCCCCCcEecccCCCCC--chhhcCCCCCccEEEeeccCCccccch
Q 036414            4 SYIDHSSEDIWMMQKLMHLNFGSITLPAPPKNYSSSLKNLIFISALHPSSC--TPDILSRLPTVQTLRISGDLSHYHSGV   81 (252)
Q Consensus         4 ~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~~l~~~~~--~~~~l~~l~~L~~L~l~~~~~~~~~~~   81 (252)
                      +.++.+|..+ ...+|++|++.++.+ ..++.++..+++|+.|+ ++.+..  ..+.++.+++|++|++++|.  ....+
T Consensus       599 ~~l~~lP~~f-~~~~L~~L~L~~s~l-~~L~~~~~~l~~Lk~L~-Ls~~~~l~~ip~ls~l~~Le~L~L~~c~--~L~~l  673 (1153)
T PLN03210        599 YPLRCMPSNF-RPENLVKLQMQGSKL-EKLWDGVHSLTGLRNID-LRGSKNLKEIPDLSMATNLETLKLSDCS--SLVEL  673 (1153)
T ss_pred             CCCCCCCCcC-CccCCcEEECcCccc-cccccccccCCCCCEEE-CCCCCCcCcCCccccCCcccEEEecCCC--Ccccc
Confidence            4456666655 457888888886553 45777788899999999 876643  34457889999999999987  67888


Q ss_pred             hHhhhccCCCCeEEeeeccchhHHHHhhccccCCCCCCceEEeeecccCCCCchhhhcCCCCceEEeccCCccCcee---
Q 036414           82 SKSLCELHKLECLKLANQGKMWQITRMILSEYKFPPSLTQLSLSNTELIEDPMPTLEKLPHLEVLKLKQNSYFERKL---  158 (252)
Q Consensus        82 ~~~l~~l~~L~~L~l~~~~~~~~~~~l~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~---  158 (252)
                      |..+..+++|+.|++.+|+.+..    +|...++ ++|++|++++|......|..   ..+|+.|+++++.+.....   
T Consensus       674 p~si~~L~~L~~L~L~~c~~L~~----Lp~~i~l-~sL~~L~Lsgc~~L~~~p~~---~~nL~~L~L~~n~i~~lP~~~~  745 (1153)
T PLN03210        674 PSSIQYLNKLEDLDMSRCENLEI----LPTGINL-KSLYRLNLSGCSRLKSFPDI---STNISWLDLDETAIEEFPSNLR  745 (1153)
T ss_pred             chhhhccCCCCEEeCCCCCCcCc----cCCcCCC-CCCCEEeCCCCCCccccccc---cCCcCeeecCCCcccccccccc
Confidence            99999999999999999777776    7733366 88888888887554344422   3456666665554322110   


Q ss_pred             -------------------------eecCCCCCccccEEEecCCccccceeccccccccccceeeccCCCCCCChHHHHh
Q 036414          159 -------------------------ACVGCSSFPQLKILHLKSMLWLEEWTMGAGAMPKLESLILNPCAYLRKLPEELWR  213 (252)
Q Consensus       159 -------------------------~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~~~~~~~~p~~l~~  213 (252)
                                               ... ...+++|+.|++++|+.+.++|..++++++|+.|++++|..++.+|..+ .
T Consensus       746 l~~L~~L~l~~~~~~~l~~~~~~l~~~~-~~~~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~-~  823 (1153)
T PLN03210        746 LENLDELILCEMKSEKLWERVQPLTPLM-TMLSPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTGI-N  823 (1153)
T ss_pred             ccccccccccccchhhccccccccchhh-hhccccchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCCCC-C
Confidence                                     000 1124578888888887677788878888889999998888777787765 6


Q ss_pred             ccccceeecccCC
Q 036414          214 IKSLCKLELHWPQ  226 (252)
Q Consensus       214 l~~L~~L~l~~~~  226 (252)
                      +++|+.|++++|.
T Consensus       824 L~sL~~L~Ls~c~  836 (1153)
T PLN03210        824 LESLESLDLSGCS  836 (1153)
T ss_pred             ccccCEEECCCCC
Confidence            7888888888875

syringae 6; Provisional

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]

Probab=99.65  E-value=1.6e-17  Score=140.49  Aligned_cols=210  Identities=20%  Similarity=0.179  Sum_probs=129.9

Q ss_pred             CCCccccchH-HHhhccccEEEecCCCCCCCCCcccCCCCCCcEecccCCCCC--chhh-cCCCCCccEEEeeccCCccc
Q 036414            3 SSYIDHSSED-IWMMQKLMHLNFGSITLPAPPKNYSSSLKNLIFISALHPSSC--TPDI-LSRLPTVQTLRISGDLSHYH   78 (252)
Q Consensus         3 ~~~l~~lp~~-i~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~~l~~~~~--~~~~-l~~l~~L~~L~l~~~~~~~~   78 (252)
                      .|+|+.||.. +.++++|+.|++..|.+...---.|.++++|+.|. +..|++  +-++ +..|.++++|+|..|.  ..
T Consensus       206 rNrittLp~r~Fk~L~~L~~LdLnrN~irive~ltFqgL~Sl~nlk-lqrN~I~kL~DG~Fy~l~kme~l~L~~N~--l~  282 (873)
T KOG4194|consen  206 RNRITTLPQRSFKRLPKLESLDLNRNRIRIVEGLTFQGLPSLQNLK-LQRNDISKLDDGAFYGLEKMEHLNLETNR--LQ  282 (873)
T ss_pred             cCcccccCHHHhhhcchhhhhhccccceeeehhhhhcCchhhhhhh-hhhcCcccccCcceeeecccceeecccch--hh
Confidence            4788888875 45599999999987776544344577888888888 777766  2222 5568888899988885  33


Q ss_pred             cchhHhhhccCCCCeEEeeeccchhHHHHhhc--cccCCCCCCceEEeeecccCCCCchhhhcCCCCceEEeccCCccCc
Q 036414           79 SGVSKSLCELHKLECLKLANQGKMWQITRMIL--SEYKFPPSLTQLSLSNTELIEDPMPTLEKLPHLEVLKLKQNSYFER  156 (252)
Q Consensus        79 ~~~~~~l~~l~~L~~L~l~~~~~~~~~~~l~~--~~~~~~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~  156 (252)
                      ..--..+.++++|+.|++++ +.+..    +.  .|..- .+|+.|+++.|++++..+..+..+..|++|+++.|++...
T Consensus       283 ~vn~g~lfgLt~L~~L~lS~-NaI~r----ih~d~Wsft-qkL~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~Nsi~~l  356 (873)
T KOG4194|consen  283 AVNEGWLFGLTSLEQLDLSY-NAIQR----IHIDSWSFT-QKLKELDLSSNRITRLDEGSFRVLSQLEELNLSHNSIDHL  356 (873)
T ss_pred             hhhcccccccchhhhhccch-hhhhe----eecchhhhc-ccceeEeccccccccCChhHHHHHHHhhhhcccccchHHH
Confidence            33345567888888888888 55543    32  44444 8888888888888877777777777777777766665331


Q ss_pred             eeeecCCCCCccccEEEecCCccccc-ee---ccccccccccceeeccCCCCCCChH-HHHhccccceeecccC
Q 036414          157 KLACVGCSSFPQLKILHLKSMLWLEE-WT---MGAGAMPKLESLILNPCAYLRKLPE-ELWRIKSLCKLELHWP  225 (252)
Q Consensus       157 ~~~~~~~~~~~~L~~L~l~~~~~l~~-~~---~~~~~l~~L~~L~l~~~~~~~~~p~-~l~~l~~L~~L~l~~~  225 (252)
                      .-. . +.++.+|++|+|+.|. +.- +.   ..+..+++|++|++.||+. +.+|. .+..++.|++|++.+.
T Consensus       357 ~e~-a-f~~lssL~~LdLr~N~-ls~~IEDaa~~f~gl~~LrkL~l~gNql-k~I~krAfsgl~~LE~LdL~~N  426 (873)
T KOG4194|consen  357 AEG-A-FVGLSSLHKLDLRSNE-LSWCIEDAAVAFNGLPSLRKLRLTGNQL-KSIPKRAFSGLEALEHLDLGDN  426 (873)
T ss_pred             Hhh-H-HHHhhhhhhhcCcCCe-EEEEEecchhhhccchhhhheeecCcee-eecchhhhccCcccceecCCCC
Confidence            111 1 2345555555555555 331 11   1123355555555555443 33332 3344555555555443

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]

Probab=99.63  E-value=2.1e-18  Score=139.87  Aligned_cols=205  Identities=18%  Similarity=0.137  Sum_probs=142.3

Q ss_pred             CCccccchHHHhhccccEEEecCCCCCCCCCcccCCCCCCcEecccCCCCC--chhhcCCCCCccEEEeeccCCccccch
Q 036414            4 SYIDHSSEDIWMMQKLMHLNFGSITLPAPPKNYSSSLKNLIFISALHPSSC--TPDILSRLPTVQTLRISGDLSHYHSGV   81 (252)
Q Consensus         4 ~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~~l~~~~~--~~~~l~~l~~L~~L~l~~~~~~~~~~~   81 (252)
                      +.+.++|.+++.+..|++++.++|.+ .++++.++.+..++.++ ...+..  .|.+++++..+..+++.++   ...++
T Consensus       101 n~ls~lp~~i~s~~~l~~l~~s~n~~-~el~~~i~~~~~l~dl~-~~~N~i~slp~~~~~~~~l~~l~~~~n---~l~~l  175 (565)
T KOG0472|consen  101 NKLSELPEQIGSLISLVKLDCSSNEL-KELPDSIGRLLDLEDLD-ATNNQISSLPEDMVNLSKLSKLDLEGN---KLKAL  175 (565)
T ss_pred             chHhhccHHHhhhhhhhhhhccccce-eecCchHHHHhhhhhhh-ccccccccCchHHHHHHHHHHhhcccc---chhhC
Confidence            44455555555555555555554433 24455555555555555 444433  5556666666666666666   34555


Q ss_pred             hHhhhccCCCCeEEeeeccchhHHHHhhc-cccCCCCCCceEEeeecccCCCCchhhhcCCCCceEEeccCCccCceeee
Q 036414           82 SKSLCELHKLECLKLANQGKMWQITRMIL-SEYKFPPSLTQLSLSNTELIEDPMPTLEKLPHLEVLKLKQNSYFERKLAC  160 (252)
Q Consensus        82 ~~~l~~l~~L~~L~l~~~~~~~~~~~l~~-~~~~~~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~  160 (252)
                      |+....++.|++++... +.++.    +| .++.+ .+|..++++.|.+. ..| .|..|+.|+++.++.|.+.- ....
T Consensus       176 ~~~~i~m~~L~~ld~~~-N~L~t----lP~~lg~l-~~L~~LyL~~Nki~-~lP-ef~gcs~L~Elh~g~N~i~~-lpae  246 (565)
T KOG0472|consen  176 PENHIAMKRLKHLDCNS-NLLET----LPPELGGL-ESLELLYLRRNKIR-FLP-EFPGCSLLKELHVGENQIEM-LPAE  246 (565)
T ss_pred             CHHHHHHHHHHhcccch-hhhhc----CChhhcch-hhhHHHHhhhcccc-cCC-CCCccHHHHHHHhcccHHHh-hHHH
Confidence            55544566777776665 54555    77 88888 88888888888876 344 67788888888886665532 1222


Q ss_pred             cCCCCCccccEEEecCCccccceeccccccccccceeeccCCCCCCChHHHHhccccceeecccCC
Q 036414          161 VGCSSFPQLKILHLKSMLWLEEWTMGAGAMPKLESLILNPCAYLRKLPEELWRIKSLCKLELHWPQ  226 (252)
Q Consensus       161 ~~~~~~~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~l~~~~  226 (252)
                      . ...++++.+||+.+|+ ++++|.++.-+.+|++|++++|.++ .+|..++++ .|+.|-+.|.|
T Consensus       247 ~-~~~L~~l~vLDLRdNk-lke~Pde~clLrsL~rLDlSNN~is-~Lp~sLgnl-hL~~L~leGNP  308 (565)
T KOG0472|consen  247 H-LKHLNSLLVLDLRDNK-LKEVPDEICLLRSLERLDLSNNDIS-SLPYSLGNL-HLKFLALEGNP  308 (565)
T ss_pred             H-hcccccceeeeccccc-cccCchHHHHhhhhhhhcccCCccc-cCCcccccc-eeeehhhcCCc
Confidence            3 4589999999999999 9999999999999999999998764 789889998 89999999987

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]

Probab=99.60  E-value=3.3e-16  Score=132.66  Aligned_cols=209  Identities=22%  Similarity=0.208  Sum_probs=120.4

Q ss_pred             CCcccc-chHHHhhccccEEEecCCCCCCCCCcccCCCCCCcEecccCCCCC---chhhcCCCCCccEEEeeccCCcccc
Q 036414            4 SYIDHS-SEDIWMMQKLMHLNFGSITLPAPPKNYSSSLKNLIFISALHPSSC---TPDILSRLPTVQTLRISGDLSHYHS   79 (252)
Q Consensus         4 ~~l~~l-p~~i~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~~l~~~~~---~~~~l~~l~~L~~L~l~~~~~~~~~   79 (252)
                      |.+.++ +..|.++++|+.+++.+|. ...+|.+....-+++.|+ +..|.+   ..+++..++.|+.|+|+.|   ...
T Consensus        88 Nkl~~id~~~f~nl~nLq~v~l~~N~-Lt~IP~f~~~sghl~~L~-L~~N~I~sv~se~L~~l~alrslDLSrN---~is  162 (873)
T KOG4194|consen   88 NKLSHIDFEFFYNLPNLQEVNLNKNE-LTRIPRFGHESGHLEKLD-LRHNLISSVTSEELSALPALRSLDLSRN---LIS  162 (873)
T ss_pred             cccccCcHHHHhcCCcceeeeeccch-hhhcccccccccceeEEe-eeccccccccHHHHHhHhhhhhhhhhhc---hhh
Confidence            445555 3346677777777777443 345666555556677777 666655   4455666777777777777   333


Q ss_pred             chh-HhhhccCCCCeEEeeeccchhHHHHhhc--cccCCCCCCceEEeeecccCCCCchhhhcCCCCceEEeccCCccCc
Q 036414           80 GVS-KSLCELHKLECLKLANQGKMWQITRMIL--SEYKFPPSLTQLSLSNTELIEDPMPTLEKLPHLEVLKLKQNSYFER  156 (252)
Q Consensus        80 ~~~-~~l~~l~~L~~L~l~~~~~~~~~~~l~~--~~~~~~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~  156 (252)
                      .++ ..+..-.++++|++++ +.+..    +.  .+..+ .+|..+.++.|+++..++..|.++++|+.|++..|++...
T Consensus       163 ~i~~~sfp~~~ni~~L~La~-N~It~----l~~~~F~~l-nsL~tlkLsrNrittLp~r~Fk~L~~L~~LdLnrN~iriv  236 (873)
T KOG4194|consen  163 EIPKPSFPAKVNIKKLNLAS-NRITT----LETGHFDSL-NSLLTLKLSRNRITTLPQRSFKRLPKLESLDLNRNRIRIV  236 (873)
T ss_pred             cccCCCCCCCCCceEEeecc-ccccc----ccccccccc-chheeeecccCcccccCHHHhhhcchhhhhhccccceeee
Confidence            333 2233335677777777 55533    32  45555 5667777777777755666666677777777766655332


Q ss_pred             eeeecCCCCCccccEEEecCCcc-----------------------ccce-eccccccccccceeeccCCCCCCChHHHH
Q 036414          157 KLACVGCSSFPQLKILHLKSMLW-----------------------LEEW-TMGAGAMPKLESLILNPCAYLRKLPEELW  212 (252)
Q Consensus       157 ~~~~~~~~~~~~L~~L~l~~~~~-----------------------l~~~-~~~~~~l~~L~~L~l~~~~~~~~~p~~l~  212 (252)
                      ++. . +.++++|+.|.+..|.-                       +..+ ..+.-++.+|+.|++++|.+.+--+....
T Consensus       237 e~l-t-FqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI~rih~d~Ws  314 (873)
T KOG4194|consen  237 EGL-T-FQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYNAIQRIHIDSWS  314 (873)
T ss_pred             hhh-h-hcCchhhhhhhhhhcCcccccCcceeeecccceeecccchhhhhhcccccccchhhhhccchhhhheeecchhh
Confidence            221 2 34455555554444440                       3322 11223456677777777665544455566


Q ss_pred             hccccceeecccC
Q 036414          213 RIKSLCKLELHWP  225 (252)
Q Consensus       213 ~l~~L~~L~l~~~  225 (252)
                      .+++|++|+++..
T Consensus       315 ftqkL~~LdLs~N  327 (873)
T KOG4194|consen  315 FTQKLKELDLSSN  327 (873)
T ss_pred             hcccceeEecccc
Confidence            6777777777654

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]

Probab=99.53  E-value=3e-17  Score=133.27  Aligned_cols=206  Identities=22%  Similarity=0.252  Sum_probs=153.0

Q ss_pred             CCCccccchHHHhhccccEEEecCCCCCCCCCcccCCCCCCcEecccCCCCC--chhhcCCCCCccEEEeeccCCccccc
Q 036414            3 SSYIDHSSEDIWMMQKLMHLNFGSITLPAPPKNYSSSLKNLIFISALHPSSC--TPDILSRLPTVQTLRISGDLSHYHSG   80 (252)
Q Consensus         3 ~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~~l~~~~~--~~~~l~~l~~L~~L~l~~~~~~~~~~   80 (252)
                      ++.+.++|++++.+.+++.+++++|. ..++|..+..+..+..++ .+.+..  .+++++.+..+..++..+|   ....
T Consensus        77 ~n~l~~lp~aig~l~~l~~l~vs~n~-ls~lp~~i~s~~~l~~l~-~s~n~~~el~~~i~~~~~l~dl~~~~N---~i~s  151 (565)
T KOG0472|consen   77 DNKLSQLPAAIGELEALKSLNVSHNK-LSELPEQIGSLISLVKLD-CSSNELKELPDSIGRLLDLEDLDATNN---QISS  151 (565)
T ss_pred             cchhhhCCHHHHHHHHHHHhhcccch-HhhccHHHhhhhhhhhhh-ccccceeecCchHHHHhhhhhhhcccc---cccc
Confidence            35566667777777777777766433 335666666666677776 555554  6666667777777766666   4566


Q ss_pred             hhHhhhccCCCCeEEeeeccchhHHHHhhc-cccCCCCCCceEEeeecccCCCCchhhhcCCCCceEEeccCCccCceee
Q 036414           81 VSKSLCELHKLECLKLANQGKMWQITRMIL-SEYKFPPSLTQLSLSNTELIEDPMPTLEKLPHLEVLKLKQNSYFERKLA  159 (252)
Q Consensus        81 ~~~~l~~l~~L~~L~l~~~~~~~~~~~l~~-~~~~~~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~  159 (252)
                      +|+.+..+.++..+.+.+ +.+.+    +| ....| +.|+.+|...|.++ ..|..++.+.+|+.|++..|.+..  .+
T Consensus       152 lp~~~~~~~~l~~l~~~~-n~l~~----l~~~~i~m-~~L~~ld~~~N~L~-tlP~~lg~l~~L~~LyL~~Nki~~--lP  222 (565)
T KOG0472|consen  152 LPEDMVNLSKLSKLDLEG-NKLKA----LPENHIAM-KRLKHLDCNSNLLE-TLPPELGGLESLELLYLRRNKIRF--LP  222 (565)
T ss_pred             CchHHHHHHHHHHhhccc-cchhh----CCHHHHHH-HHHHhcccchhhhh-cCChhhcchhhhHHHHhhhccccc--CC
Confidence            677777777777777766 55544    55 45557 89999988777776 788889999999999998888744  33


Q ss_pred             ecCCCCCccccEEEecCCccccceecccc-ccccccceeeccCCCCCCChHHHHhccccceeecccCC
Q 036414          160 CVGCSSFPQLKILHLKSMLWLEEWTMGAG-AMPKLESLILNPCAYLRKLPEELWRIKSLCKLELHWPQ  226 (252)
Q Consensus       160 ~~~~~~~~~L~~L~l~~~~~l~~~~~~~~-~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~l~~~~  226 (252)
                       + ++++..|+++++..|. ++.+|.+.+ +++++..|++..|.. ++.|.++-.+.+|..|++++..
T Consensus       223 -e-f~gcs~L~Elh~g~N~-i~~lpae~~~~L~~l~vLDLRdNkl-ke~Pde~clLrsL~rLDlSNN~  286 (565)
T KOG0472|consen  223 -E-FPGCSLLKELHVGENQ-IEMLPAEHLKHLNSLLVLDLRDNKL-KEVPDEICLLRSLERLDLSNND  286 (565)
T ss_pred             -C-CCccHHHHHHHhcccH-HHhhHHHHhcccccceeeecccccc-ccCchHHHHhhhhhhhcccCCc
Confidence             4 7889999999999888 888877665 899999999999865 6899999889999999998764

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]

Probab=99.49  E-value=7e-16  Score=112.05  Aligned_cols=163  Identities=21%  Similarity=0.267  Sum_probs=130.9

Q ss_pred             cCCCCCCcEecccCCCCC--chhhcCCCCCccEEEeeccCCccccchhHhhhccCCCCeEEeeeccchhHHHHhhc-ccc
Q 036414           37 SSSLKNLIFISALHPSSC--TPDILSRLPTVQTLRISGDLSHYHSGVSKSLCELHKLECLKLANQGKMWQITRMIL-SEY  113 (252)
Q Consensus        37 l~~l~~L~~L~~l~~~~~--~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~l~~-~~~  113 (252)
                      +-++.+...|. ++.++.  .|+.+..+.+|+.|+++++   ....+|.++..+++|+.|++.- +.+..    +| .++
T Consensus        29 Lf~~s~ITrLt-LSHNKl~~vppnia~l~nlevln~~nn---qie~lp~~issl~klr~lnvgm-nrl~~----lprgfg   99 (264)
T KOG0617|consen   29 LFNMSNITRLT-LSHNKLTVVPPNIAELKNLEVLNLSNN---QIEELPTSISSLPKLRILNVGM-NRLNI----LPRGFG   99 (264)
T ss_pred             ccchhhhhhhh-cccCceeecCCcHHHhhhhhhhhcccc---hhhhcChhhhhchhhhheecch-hhhhc----CccccC
Confidence            45666677777 888887  7888889999999999888   6888899999999999999887 66655    78 889


Q ss_pred             CCCCCCceEEeeecccC-CCCchhhhcCCCCceEEeccCCccCceeeecCCCCCccccEEEecCCccccceecccccccc
Q 036414          114 KFPPSLTQLSLSNTELI-EDPMPTLEKLPHLEVLKLKQNSYFERKLACVGCSSFPQLKILHLKSMLWLEEWTMGAGAMPK  192 (252)
Q Consensus       114 ~~~~~L~~l~l~~~~~~-~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~l~~  192 (252)
                      ++ |-|+.||+.++++. ...|..|..+..|+.|.+++|.+.-  .+-. .+.+++|+.|.+.+|. +-++|.+.+.+..
T Consensus       100 s~-p~levldltynnl~e~~lpgnff~m~tlralyl~dndfe~--lp~d-vg~lt~lqil~lrdnd-ll~lpkeig~lt~  174 (264)
T KOG0617|consen  100 SF-PALEVLDLTYNNLNENSLPGNFFYMTTLRALYLGDNDFEI--LPPD-VGKLTNLQILSLRDND-LLSLPKEIGDLTR  174 (264)
T ss_pred             CC-chhhhhhccccccccccCCcchhHHHHHHHHHhcCCCccc--CChh-hhhhcceeEEeeccCc-hhhCcHHHHHHHH
Confidence            98 99999999988775 3466777778888889998887643  3334 7789999999999988 7788888899999


Q ss_pred             ccceeeccCCCCCCChHHHHhc
Q 036414          193 LESLILNPCAYLRKLPEELWRI  214 (252)
Q Consensus       193 L~~L~l~~~~~~~~~p~~l~~l  214 (252)
                      |+.|.+++|... .+|..+.++
T Consensus       175 lrelhiqgnrl~-vlppel~~l  195 (264)
T KOG0617|consen  175 LRELHIQGNRLT-VLPPELANL  195 (264)
T ss_pred             HHHHhcccceee-ecChhhhhh
Confidence            999999998754 577666554

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]

Probab=99.47  E-value=1.4e-15  Score=134.60  Aligned_cols=209  Identities=23%  Similarity=0.211  Sum_probs=152.6

Q ss_pred             CCCccccchHHHhhccccEEEecCCCCCCCCCcccCCCCCCcEecccCCCCC--chhhcCCCCCccEEEeeccCCccccc
Q 036414            3 SSYIDHSSEDIWMMQKLMHLNFGSITLPAPPKNYSSSLKNLIFISALHPSSC--TPDILSRLPTVQTLRISGDLSHYHSG   80 (252)
Q Consensus         3 ~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~~l~~~~~--~~~~l~~l~~L~~L~l~~~~~~~~~~   80 (252)
                      ++.+..+|+-++.|.+|+.+++.+|.+ ..+|..+..++.|+.|. ...++.  +|+.......|++|+|..|.   ...
T Consensus       250 ~n~l~~lp~wi~~~~nle~l~~n~N~l-~~lp~ri~~~~~L~~l~-~~~nel~yip~~le~~~sL~tLdL~~N~---L~~  324 (1081)
T KOG0618|consen  250 HNNLSNLPEWIGACANLEALNANHNRL-VALPLRISRITSLVSLS-AAYNELEYIPPFLEGLKSLRTLDLQSNN---LPS  324 (1081)
T ss_pred             hhhhhcchHHHHhcccceEecccchhH-HhhHHHHhhhhhHHHHH-hhhhhhhhCCCcccccceeeeeeehhcc---ccc
Confidence            356778887788999999999886666 67777788888888888 777766  77777778888888888774   333


Q ss_pred             hhHhhhc--------------------------cCCCCeEEeeeccchhHHHHhhccccCCCCCCceEEeeecccCCCCc
Q 036414           81 VSKSLCE--------------------------LHKLECLKLANQGKMWQITRMILSEYKFPPSLTQLSLSNTELIEDPM  134 (252)
Q Consensus        81 ~~~~l~~--------------------------l~~L~~L~l~~~~~~~~~~~l~~~~~~~~~~L~~l~l~~~~~~~~~~  134 (252)
                      +|..+-.                          +..|+.|++.+ +.+.  .+.+|.+..+ .+|+.|++++|++...+-
T Consensus       325 lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~Lylan-N~Lt--d~c~p~l~~~-~hLKVLhLsyNrL~~fpa  400 (1081)
T KOG0618|consen  325 LPDNFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLAN-NHLT--DSCFPVLVNF-KHLKVLHLSYNRLNSFPA  400 (1081)
T ss_pred             cchHHHhhhhHHHHHHhhhhccccccccccchhhHHHHHHHHhc-Cccc--ccchhhhccc-cceeeeeecccccccCCH
Confidence            4332111                          11233444444 2220  0116777777 999999999999986667


Q ss_pred             hhhhcCCCCceEEeccCCccCceeeecCCCCCccccEEEecCCccccceeccccccccccceeeccCCCCCC-ChHHHHh
Q 036414          135 PTLEKLPHLEVLKLKQNSYFERKLACVGCSSFPQLKILHLKSMLWLEEWTMGAGAMPKLESLILNPCAYLRK-LPEELWR  213 (252)
Q Consensus       135 ~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~~~~~~~-~p~~l~~  213 (252)
                      ..+.++..|++|++++|+.+...  .. ...++.|++|...+|+ +..+| ++..++.|+.++++.|+.... +|.... 
T Consensus       401 s~~~kle~LeeL~LSGNkL~~Lp--~t-va~~~~L~tL~ahsN~-l~~fP-e~~~l~qL~~lDlS~N~L~~~~l~~~~p-  474 (1081)
T KOG0618|consen  401 SKLRKLEELEELNLSGNKLTTLP--DT-VANLGRLHTLRAHSNQ-LLSFP-ELAQLPQLKVLDLSCNNLSEVTLPEALP-  474 (1081)
T ss_pred             HHHhchHHhHHHhcccchhhhhh--HH-HHhhhhhHHHhhcCCc-eeech-hhhhcCcceEEecccchhhhhhhhhhCC-
Confidence            78889999999999999987633  34 6788999999988888 88888 688899999999988876542 344332 


Q ss_pred             ccccceeecccCC
Q 036414          214 IKSLCKLELHWPQ  226 (252)
Q Consensus       214 l~~L~~L~l~~~~  226 (252)
                      -++|++|+++|.+
T Consensus       475 ~p~LkyLdlSGN~  487 (1081)
T KOG0618|consen  475 SPNLKYLDLSGNT  487 (1081)
T ss_pred             CcccceeeccCCc
Confidence            2799999999887

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=99.46  E-value=2.3e-14  Score=118.55  Aligned_cols=212  Identities=21%  Similarity=0.162  Sum_probs=144.2

Q ss_pred             cccchHHHhhccccEEEecCCCCCC------CCCcccCCCCCCcEecccCCCCC---chhhcCCC---CCccEEEeeccC
Q 036414            7 DHSSEDIWMMQKLMHLNFGSITLPA------PPKNYSSSLKNLIFISALHPSSC---TPDILSRL---PTVQTLRISGDL   74 (252)
Q Consensus         7 ~~lp~~i~~l~~L~~L~l~~~~~~~------~~~~~l~~l~~L~~L~~l~~~~~---~~~~l~~l---~~L~~L~l~~~~   74 (252)
                      ..++..+...+.+++++++++....      .++..+..+++|+.|+ ++.+..   .+..+..+   ++|++|++++|.
T Consensus        41 ~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~-l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~  119 (319)
T cd00116          41 KALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELD-LSDNALGPDGCGVLESLLRSSSLQELKLNNNG  119 (319)
T ss_pred             HHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcCceeEEE-ccCCCCChhHHHHHHHHhccCcccEEEeeCCc
Confidence            4567677788889999999776541      2334567788999999 877765   33334333   459999999986


Q ss_pred             Cccc----cchhHhhhcc-CCCCeEEeeeccchh--HHHHhhc-cccCCCCCCceEEeeecccCCCCc----hhhhcCCC
Q 036414           75 SHYH----SGVSKSLCEL-HKLECLKLANQGKMW--QITRMIL-SEYKFPPSLTQLSLSNTELIEDPM----PTLEKLPH  142 (252)
Q Consensus        75 ~~~~----~~~~~~l~~l-~~L~~L~l~~~~~~~--~~~~l~~-~~~~~~~~L~~l~l~~~~~~~~~~----~~l~~~~~  142 (252)
                        ..    ..+...+..+ ++|+++++.+|. +.  .... ++ .+... ++|++|++++|.+.+...    ..+...++
T Consensus       120 --~~~~~~~~l~~~l~~~~~~L~~L~L~~n~-l~~~~~~~-~~~~~~~~-~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~  194 (319)
T cd00116         120 --LGDRGLRLLAKGLKDLPPALEKLVLGRNR-LEGASCEA-LAKALRAN-RDLKELNLANNGIGDAGIRALAEGLKANCN  194 (319)
T ss_pred             --cchHHHHHHHHHHHhCCCCceEEEcCCCc-CCchHHHH-HHHHHHhC-CCcCEEECcCCCCchHHHHHHHHHHHhCCC
Confidence              32    2334556677 899999999843 31  1000 23 45555 789999999998874332    33455679


Q ss_pred             CceEEeccCCccCce---eeecCCCCCccccEEEecCCccccce--eccccc----cccccceeeccCCCCC----CChH
Q 036414          143 LEVLKLKQNSYFERK---LACVGCSSFPQLKILHLKSMLWLEEW--TMGAGA----MPKLESLILNPCAYLR----KLPE  209 (252)
Q Consensus       143 L~~L~l~~~~~~~~~---~~~~~~~~~~~L~~L~l~~~~~l~~~--~~~~~~----l~~L~~L~l~~~~~~~----~~p~  209 (252)
                      |++|++++|.+.+..   +... ...+++|++|++++|+ +++.  ......    .+.|+.|++++|...+    .+..
T Consensus       195 L~~L~L~~n~i~~~~~~~l~~~-~~~~~~L~~L~ls~n~-l~~~~~~~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~  272 (319)
T cd00116         195 LEVLDLNNNGLTDEGASALAET-LASLKSLEVLNLGDNN-LTDAGAAALASALLSPNISLLTLSLSCNDITDDGAKDLAE  272 (319)
T ss_pred             CCEEeccCCccChHHHHHHHHH-hcccCCCCEEecCCCc-CchHHHHHHHHHHhccCCCceEEEccCCCCCcHHHHHHHH
Confidence            999999988775432   2223 5578899999999988 6642  111122    3789999999998653    2344


Q ss_pred             HHHhccccceeecccCC
Q 036414          210 ELWRIKSLCKLELHWPQ  226 (252)
Q Consensus       210 ~l~~l~~L~~L~l~~~~  226 (252)
                      .+..+++|++++++++.
T Consensus       273 ~~~~~~~L~~l~l~~N~  289 (319)
T cd00116         273 VLAEKESLLELDLRGNK  289 (319)
T ss_pred             HHhcCCCccEEECCCCC
Confidence            56667889999998864

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]

Probab=99.45  E-value=1.7e-15  Score=110.07  Aligned_cols=164  Identities=20%  Similarity=0.286  Sum_probs=104.7

Q ss_pred             HHhhccccEEEecCCCCCCCCCcccCCCCCCcEecccCCCCC--chhhcCCCCCccEEEeeccCCccccchhHhhhccCC
Q 036414           13 IWMMQKLMHLNFGSITLPAPPKNYSSSLKNLIFISALHPSSC--TPDILSRLPTVQTLRISGDLSHYHSGVSKSLCELHK   90 (252)
Q Consensus        13 i~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~~l~~~~~--~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~   90 (252)
                      +.++.++++|.+++|.+ ..+|+.+..+.+|+.|. +..+.+  +|..++.++.|+.|++..+   ....+|..++.++.
T Consensus        29 Lf~~s~ITrLtLSHNKl-~~vppnia~l~nlevln-~~nnqie~lp~~issl~klr~lnvgmn---rl~~lprgfgs~p~  103 (264)
T KOG0617|consen   29 LFNMSNITRLTLSHNKL-TVVPPNIAELKNLEVLN-LSNNQIEELPTSISSLPKLRILNVGMN---RLNILPRGFGSFPA  103 (264)
T ss_pred             ccchhhhhhhhcccCce-eecCCcHHHhhhhhhhh-cccchhhhcChhhhhchhhhheecchh---hhhcCccccCCCch
Confidence            45566667777774443 34566677777777777 666655  6777777777777777766   35566777777777


Q ss_pred             CCeEEeeeccchhHHHHhhc-cccCCCCCCceEEeeecccCCCCchhhhcCCCCceEEeccCCccCceeeecCCCCCccc
Q 036414           91 LECLKLANQGKMWQITRMIL-SEYKFPPSLTQLSLSNTELIEDPMPTLEKLPHLEVLKLKQNSYFERKLACVGCSSFPQL  169 (252)
Q Consensus        91 L~~L~l~~~~~~~~~~~l~~-~~~~~~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L  169 (252)
                      |+.|++.+++--+..   +| .+..+ ..|+.|.++++.++ ..|..++.+.+|+.|.+..|....  .+.. .+.+..|
T Consensus       104 levldltynnl~e~~---lpgnff~m-~tlralyl~dndfe-~lp~dvg~lt~lqil~lrdndll~--lpke-ig~lt~l  175 (264)
T KOG0617|consen  104 LEVLDLTYNNLNENS---LPGNFFYM-TTLRALYLGDNDFE-ILPPDVGKLTNLQILSLRDNDLLS--LPKE-IGDLTRL  175 (264)
T ss_pred             hhhhhcccccccccc---CCcchhHH-HHHHHHHhcCCCcc-cCChhhhhhcceeEEeeccCchhh--CcHH-HHHHHHH
Confidence            777777763322221   45 45555 67777777777665 566667777777777776666543  3334 5666777


Q ss_pred             cEEEecCCccccceecccccc
Q 036414          170 KILHLKSMLWLEEWTMGAGAM  190 (252)
Q Consensus       170 ~~L~l~~~~~l~~~~~~~~~l  190 (252)
                      ++|++.+|+ +.-+|++.+.+
T Consensus       176 relhiqgnr-l~vlppel~~l  195 (264)
T KOG0617|consen  176 RELHIQGNR-LTVLPPELANL  195 (264)
T ss_pred             HHHhcccce-eeecChhhhhh
Confidence            777777777 66666655443

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=99.40  E-value=1.3e-13  Score=113.99  Aligned_cols=211  Identities=21%  Similarity=0.147  Sum_probs=122.4

Q ss_pred             chHHHhhccccEEEecCCCCCC----CCCcccCCCCCCcEecccCCCCC---------chhhcCCCCCccEEEeeccCCc
Q 036414           10 SEDIWMMQKLMHLNFGSITLPA----PPKNYSSSLKNLIFISALHPSSC---------TPDILSRLPTVQTLRISGDLSH   76 (252)
Q Consensus        10 p~~i~~l~~L~~L~l~~~~~~~----~~~~~l~~l~~L~~L~~l~~~~~---------~~~~l~~l~~L~~L~l~~~~~~   76 (252)
                      +..+..+.+|+.++++++.+..    .++..+...++++++. +..+..         .+..+..+++|++|++++|.  
T Consensus        16 ~~~~~~l~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~-l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~--   92 (319)
T cd00116          16 TELLPKLLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELC-LSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNA--   92 (319)
T ss_pred             HHHHHHHhhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEe-ccccccCCcchHHHHHHHHHHhcCceeEEEccCCC--
Confidence            3445666778888888666532    2444556666777777 554432         23445667788888888775  


Q ss_pred             cccchhHhhhccC---CCCeEEeeeccchh-HHHHhhc-cccCCCCCCceEEeeecccCCCC----chhhhcCCCCceEE
Q 036414           77 YHSGVSKSLCELH---KLECLKLANQGKMW-QITRMIL-SEYKFPPSLTQLSLSNTELIEDP----MPTLEKLPHLEVLK  147 (252)
Q Consensus        77 ~~~~~~~~l~~l~---~L~~L~l~~~~~~~-~~~~l~~-~~~~~~~~L~~l~l~~~~~~~~~----~~~l~~~~~L~~L~  147 (252)
                      .....+..+..+.   +|++|++.++. +. .....+. .+..++++|+.+++++|.++...    ...+..+++|++|+
T Consensus        93 ~~~~~~~~~~~l~~~~~L~~L~ls~~~-~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~  171 (319)
T cd00116          93 LGPDGCGVLESLLRSSSLQELKLNNNG-LGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKALRANRDLKELN  171 (319)
T ss_pred             CChhHHHHHHHHhccCcccEEEeeCCc-cchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEE
Confidence            3333444444443   38888887742 31 1000011 22332367888888888776322    23345566788888


Q ss_pred             eccCCccCceee---ecCCCCCccccEEEecCCccccc-----eeccccccccccceeeccCCCCCCChHHH-Hh----c
Q 036414          148 LKQNSYFERKLA---CVGCSSFPQLKILHLKSMLWLEE-----WTMGAGAMPKLESLILNPCAYLRKLPEEL-WR----I  214 (252)
Q Consensus       148 l~~~~~~~~~~~---~~~~~~~~~L~~L~l~~~~~l~~-----~~~~~~~l~~L~~L~l~~~~~~~~~p~~l-~~----l  214 (252)
                      +++|.+.+....   .. ...+++|+.|++++|. +.+     +......+++|++|++++|...+.-...+ ..    .
T Consensus       172 l~~n~l~~~~~~~l~~~-l~~~~~L~~L~L~~n~-i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~~~~~~~l~~~~~~~~  249 (319)
T cd00116         172 LANNGIGDAGIRALAEG-LKANCNLEVLDLNNNG-LTDEGASALAETLASLKSLEVLNLGDNNLTDAGAAALASALLSPN  249 (319)
T ss_pred             CcCCCCchHHHHHHHHH-HHhCCCCCEEeccCCc-cChHHHHHHHHHhcccCCCCEEecCCCcCchHHHHHHHHHHhccC
Confidence            877776542221   11 2345688888888876 542     22334567778888888877554111111 22    2


Q ss_pred             cccceeecccCC
Q 036414          215 KSLCKLELHWPQ  226 (252)
Q Consensus       215 ~~L~~L~l~~~~  226 (252)
                      +.|++|++.+|.
T Consensus       250 ~~L~~L~l~~n~  261 (319)
T cd00116         250 ISLLTLSLSCND  261 (319)
T ss_pred             CCceEEEccCCC
Confidence            678888887774

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]

Probab=99.39  E-value=6.2e-15  Score=119.62  Aligned_cols=93  Identities=16%  Similarity=0.200  Sum_probs=64.4

Q ss_pred             CCCccccchH-HHhhccccEEEecCCCCCCCCCcccCCCCCCcEecccCC-CCC--chhh-cCCCCCccEEEeeccCCcc
Q 036414            3 SSYIDHSSED-IWMMQKLMHLNFGSITLPAPPKNYSSSLKNLIFISALHP-SSC--TPDI-LSRLPTVQTLRISGDLSHY   77 (252)
Q Consensus         3 ~~~l~~lp~~-i~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~~l~~-~~~--~~~~-l~~l~~L~~L~l~~~~~~~   77 (252)
                      -|.|++||+. |+.+++||+||++.|.+...-|+.|.++..+..|. +.. +++  ++.. ++++..++.|.+.-++  .
T Consensus        76 qN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lv-lyg~NkI~~l~k~~F~gL~slqrLllNan~--i  152 (498)
T KOG4237|consen   76 QNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLV-LYGNNKITDLPKGAFGGLSSLQRLLLNANH--I  152 (498)
T ss_pred             cCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHH-hhcCCchhhhhhhHhhhHHHHHHHhcChhh--h
Confidence            4789999884 89999999999998888888899999999888887 555 554  4444 5556666666555554  3


Q ss_pred             ccchhHhhhccCCCCeEEeee
Q 036414           78 HSGVSKSLCELHKLECLKLAN   98 (252)
Q Consensus        78 ~~~~~~~l~~l~~L~~L~l~~   98 (252)
                      .......+..++++..|++..
T Consensus       153 ~Cir~~al~dL~~l~lLslyD  173 (498)
T KOG4237|consen  153 NCIRQDALRDLPSLSLLSLYD  173 (498)
T ss_pred             cchhHHHHHHhhhcchhcccc
Confidence            333444445555555554444

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=99.36  E-value=3.4e-12  Score=115.38  Aligned_cols=127  Identities=17%  Similarity=0.181  Sum_probs=68.6

Q ss_pred             CCccccchHHHhhccccEEEecCCCCCCCCCcccCCCCCCcEecccCCCCC--chhhcCCCCCccEEEeeccCCccccch
Q 036414            4 SYIDHSSEDIWMMQKLMHLNFGSITLPAPPKNYSSSLKNLIFISALHPSSC--TPDILSRLPTVQTLRISGDLSHYHSGV   81 (252)
Q Consensus         4 ~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~~l~~~~~--~~~~l~~l~~L~~L~l~~~~~~~~~~~   81 (252)
                      ..++++|..+.  .+|+.|++++|.+. .+|..+.  .+|+.|+ ++.|.+  +|..+.  .+|+.|++++|.   ...+
T Consensus       188 ~~LtsLP~~Ip--~~L~~L~Ls~N~Lt-sLP~~l~--~nL~~L~-Ls~N~LtsLP~~l~--~~L~~L~Ls~N~---L~~L  256 (754)
T PRK15370        188 LGLTTIPACIP--EQITTLILDNNELK-SLPENLQ--GNIKTLY-ANSNQLTSIPATLP--DTIQEMELSINR---ITEL  256 (754)
T ss_pred             CCcCcCCcccc--cCCcEEEecCCCCC-cCChhhc--cCCCEEE-CCCCccccCChhhh--ccccEEECcCCc---cCcC
Confidence            45666666553  36777777755443 4555433  4677777 666655  343332  467777777763   3345


Q ss_pred             hHhhhccCCCCeEEeeeccchhHHHHhhccccCCCCCCceEEeeecccCCCCchhhhcCCCCceEEeccCCc
Q 036414           82 SKSLCELHKLECLKLANQGKMWQITRMILSEYKFPPSLTQLSLSNTELIEDPMPTLEKLPHLEVLKLKQNSY  153 (252)
Q Consensus        82 ~~~l~~l~~L~~L~l~~~~~~~~~~~l~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~  153 (252)
                      |..+.  .+|+.|++++ +.+..    +|.  .++++|++|++++|.++. .|..+  .++|+.|++++|.+
T Consensus       257 P~~l~--s~L~~L~Ls~-N~L~~----LP~--~l~~sL~~L~Ls~N~Lt~-LP~~l--p~sL~~L~Ls~N~L  316 (754)
T PRK15370        257 PERLP--SALQSLDLFH-NKISC----LPE--NLPEELRYLSVYDNSIRT-LPAHL--PSGITHLNVQSNSL  316 (754)
T ss_pred             ChhHh--CCCCEEECcC-CccCc----ccc--ccCCCCcEEECCCCcccc-Ccccc--hhhHHHHHhcCCcc
Confidence            55443  3677777765 44444    441  122566777777666653 22211  12445555544444

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=99.35  E-value=2.7e-12  Score=116.05  Aligned_cols=195  Identities=17%  Similarity=0.205  Sum_probs=125.9

Q ss_pred             CCCCccccchHHHhhccccEEEecCCCCCCCCCcccCCCCCCcEecccCCCCC--chhhcCCCCCccEEEeeccCCcccc
Q 036414            2 PSSYIDHSSEDIWMMQKLMHLNFGSITLPAPPKNYSSSLKNLIFISALHPSSC--TPDILSRLPTVQTLRISGDLSHYHS   79 (252)
Q Consensus         2 ~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~~l~~~~~--~~~~l~~l~~L~~L~l~~~~~~~~~   79 (252)
                      .+|.++++|..+.  .+|++|++++|.+. .+|..+.  .+|+.|+ ++.|.+  +|..+.  ++|+.|++++|.   ..
T Consensus       207 s~N~LtsLP~~l~--~nL~~L~Ls~N~Lt-sLP~~l~--~~L~~L~-Ls~N~L~~LP~~l~--s~L~~L~Ls~N~---L~  275 (754)
T PRK15370        207 DNNELKSLPENLQ--GNIKTLYANSNQLT-SIPATLP--DTIQEME-LSINRITELPERLP--SALQSLDLFHNK---IS  275 (754)
T ss_pred             cCCCCCcCChhhc--cCCCEEECCCCccc-cCChhhh--ccccEEE-CcCCccCcCChhHh--CCCCEEECcCCc---cC
Confidence            3578889998765  58999999977654 5665443  3688888 777776  554443  578888888774   34


Q ss_pred             chhHhhhccCCCCeEEeeeccchhHHHHhhc-cc------------------cCCCCCCceEEeeecccCCCCchhhhcC
Q 036414           80 GVSKSLCELHKLECLKLANQGKMWQITRMIL-SE------------------YKFPPSLTQLSLSNTELIEDPMPTLEKL  140 (252)
Q Consensus        80 ~~~~~l~~l~~L~~L~l~~~~~~~~~~~l~~-~~------------------~~~~~~L~~l~l~~~~~~~~~~~~l~~~  140 (252)
                      .+|..+.  ++|+.|++++ +.+..    +| .+                  ..++++|+.|++++|.++. .|..+  .
T Consensus       276 ~LP~~l~--~sL~~L~Ls~-N~Lt~----LP~~lp~sL~~L~Ls~N~Lt~LP~~l~~sL~~L~Ls~N~Lt~-LP~~l--~  345 (754)
T PRK15370        276 CLPENLP--EELRYLSVYD-NSIRT----LPAHLPSGITHLNVQSNSLTALPETLPPGLKTLEAGENALTS-LPASL--P  345 (754)
T ss_pred             ccccccC--CCCcEEECCC-Ccccc----CcccchhhHHHHHhcCCccccCCccccccceeccccCCcccc-CChhh--c
Confidence            5565443  4788888877 33322    22 10                  0123567777777777663 34333  3


Q ss_pred             CCCceEEeccCCccCceeeecCCCCCccccEEEecCCccccceeccccccccccceeeccCCCCCCChHHHH----hccc
Q 036414          141 PHLEVLKLKQNSYFERKLACVGCSSFPQLKILHLKSMLWLEEWTMGAGAMPKLESLILNPCAYLRKLPEELW----RIKS  216 (252)
Q Consensus       141 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~~~~~~~~p~~l~----~l~~  216 (252)
                      ++|+.|++++|.+..  ++..   -.++|+.|++++|. +..+|....  +.|+.|++++|... .+|..+.    .++.
T Consensus       346 ~sL~~L~Ls~N~L~~--LP~~---lp~~L~~LdLs~N~-Lt~LP~~l~--~sL~~LdLs~N~L~-~LP~sl~~~~~~~~~  416 (754)
T PRK15370        346 PELQVLDVSKNQITV--LPET---LPPTITTLDVSRNA-LTNLPENLP--AALQIMQASRNNLV-RLPESLPHFRGEGPQ  416 (754)
T ss_pred             CcccEEECCCCCCCc--CChh---hcCCcCEEECCCCc-CCCCCHhHH--HHHHHHhhccCCcc-cCchhHHHHhhcCCC
Confidence            678888888777653  2211   13578888888887 777765442  36888888887764 5665443    3477


Q ss_pred             cceeecccCC
Q 036414          217 LCKLELHWPQ  226 (252)
Q Consensus       217 L~~L~l~~~~  226 (252)
                      +..+++.+.+
T Consensus       417 l~~L~L~~Np  426 (754)
T PRK15370        417 PTRIIVEYNP  426 (754)
T ss_pred             ccEEEeeCCC
Confidence            8888888876

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]

Probab=99.32  E-value=9.1e-14  Score=123.38  Aligned_cols=185  Identities=22%  Similarity=0.259  Sum_probs=146.9

Q ss_pred             CCCccccchHHHhhccccEEEecCCCCCCCCCcccCCCCCCcEecccCCCCC--chhhc---------------------
Q 036414            3 SSYIDHSSEDIWMMQKLMHLNFGSITLPAPPKNYSSSLKNLIFISALHPSSC--TPDIL---------------------   59 (252)
Q Consensus         3 ~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~~l~~~~~--~~~~l---------------------   59 (252)
                      .|++..+|..+....+|+.|++.+|.. ..+|+...++++|++|+ +..+.+  .|+.+                     
T Consensus       273 ~N~l~~lp~ri~~~~~L~~l~~~~nel-~yip~~le~~~sL~tLd-L~~N~L~~lp~~~l~v~~~~l~~ln~s~n~l~~l  350 (1081)
T KOG0618|consen  273 HNRLVALPLRISRITSLVSLSAAYNEL-EYIPPFLEGLKSLRTLD-LQSNNLPSLPDNFLAVLNASLNTLNVSSNKLSTL  350 (1081)
T ss_pred             chhHHhhHHHHhhhhhHHHHHhhhhhh-hhCCCcccccceeeeee-ehhccccccchHHHhhhhHHHHHHhhhhcccccc
Confidence            367888999999999999999985554 46788888899999999 887765  33221                     


Q ss_pred             -----CCCCCccEEEeeccCCccccchhHhhhccCCCCeEEeeeccchhHHHHhhc--cccCCCCCCceEEeeecccCCC
Q 036414           60 -----SRLPTVQTLRISGDLSHYHSGVSKSLCELHKLECLKLANQGKMWQITRMIL--SEYKFPPSLTQLSLSNTELIED  132 (252)
Q Consensus        60 -----~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~l~~--~~~~~~~~L~~l~l~~~~~~~~  132 (252)
                           ..+..|+.|.+.+|.  ......+.+..+++|+.|++++ +.+..    +|  .+.++ +.|+.|++++|.++ .
T Consensus       351 p~~~e~~~~~Lq~LylanN~--Ltd~c~p~l~~~~hLKVLhLsy-NrL~~----fpas~~~kl-e~LeeL~LSGNkL~-~  421 (1081)
T KOG0618|consen  351 PSYEENNHAALQELYLANNH--LTDSCFPVLVNFKHLKVLHLSY-NRLNS----FPASKLRKL-EELEELNLSGNKLT-T  421 (1081)
T ss_pred             ccccchhhHHHHHHHHhcCc--ccccchhhhccccceeeeeecc-ccccc----CCHHHHhch-HHhHHHhcccchhh-h
Confidence                 013457778888887  7777778889999999999999 77766    77  77788 99999999999998 6


Q ss_pred             CchhhhcCCCCceEEeccCCccCceeeecCCCCCccccEEEecCCccccceecccccc-ccccceeeccCCC
Q 036414          133 PMPTLEKLPHLEVLKLKQNSYFERKLACVGCSSFPQLKILHLKSMLWLEEWTMGAGAM-PKLESLILNPCAY  203 (252)
Q Consensus       133 ~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~l-~~L~~L~l~~~~~  203 (252)
                      .|..+..++.|++|...+|.+..  ++ . ...++.|+.+|++.|. ++.+......- |+|++|+++||..
T Consensus       422 Lp~tva~~~~L~tL~ahsN~l~~--fP-e-~~~l~qL~~lDlS~N~-L~~~~l~~~~p~p~LkyLdlSGN~~  488 (1081)
T KOG0618|consen  422 LPDTVANLGRLHTLRAHSNQLLS--FP-E-LAQLPQLKVLDLSCNN-LSEVTLPEALPSPNLKYLDLSGNTR  488 (1081)
T ss_pred             hhHHHHhhhhhHHHhhcCCceee--ch-h-hhhcCcceEEecccch-hhhhhhhhhCCCcccceeeccCCcc
Confidence            77889999999999998777743  44 4 7789999999999998 88653322222 7999999999974

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=99.31  E-value=1.6e-11  Score=110.81  Aligned_cols=74  Identities=24%  Similarity=0.172  Sum_probs=52.6

Q ss_pred             CCceEEeccCCccCceeeecCCCCCccccEEEecCCccccceeccccccccccceeeccCCCCCCChHHHHhccccceee
Q 036414          142 HLEVLKLKQNSYFERKLACVGCSSFPQLKILHLKSMLWLEEWTMGAGAMPKLESLILNPCAYLRKLPEELWRIKSLCKLE  221 (252)
Q Consensus       142 ~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~  221 (252)
                      +|+.|++++|.+..  ++    ...++|+.|++++|. ++.+|..   ..+|+.|++++|... .+|..+..+++|+.++
T Consensus       383 ~L~~LdLs~N~Lt~--LP----~l~s~L~~LdLS~N~-LssIP~l---~~~L~~L~Ls~NqLt-~LP~sl~~L~~L~~Ld  451 (788)
T PRK15387        383 GLKELIVSGNRLTS--LP----VLPSELKELMVSGNR-LTSLPML---PSGLLSLSVYRNQLT-RLPESLIHLSSETTVN  451 (788)
T ss_pred             ccceEEecCCcccC--CC----CcccCCCEEEccCCc-CCCCCcc---hhhhhhhhhccCccc-ccChHHhhccCCCeEE
Confidence            56666666665543  11    123568888888887 7776642   346788888887764 7898888999999999


Q ss_pred             cccCC
Q 036414          222 LHWPQ  226 (252)
Q Consensus       222 l~~~~  226 (252)
                      +++++
T Consensus       452 Ls~N~  456 (788)
T PRK15387        452 LEGNP  456 (788)
T ss_pred             CCCCC
Confidence            99886

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]

Probab=99.12  E-value=1.8e-12  Score=102.01  Aligned_cols=174  Identities=21%  Similarity=0.207  Sum_probs=103.2

Q ss_pred             CCcEecccCCCCCchh----hcCCCCCccEEEeeccCCccccchhHhhhccCCCCeEEeeeccchhHHHHhhc---cccC
Q 036414           42 NLIFISALHPSSCTPD----ILSRLPTVQTLRISGDLSHYHSGVSKSLCELHKLECLKLANQGKMWQITRMIL---SEYK  114 (252)
Q Consensus        42 ~L~~L~~l~~~~~~~~----~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~l~~---~~~~  114 (252)
                      .||+++ ++...+...    .+..|.+|+.|.+.+..  ..+.+...+.+-.+|+.++++.++.+.+    ..   .+.+
T Consensus       186 Rlq~lD-LS~s~it~stl~~iLs~C~kLk~lSlEg~~--LdD~I~~~iAkN~~L~~lnlsm~sG~t~----n~~~ll~~s  258 (419)
T KOG2120|consen  186 RLQHLD-LSNSVITVSTLHGILSQCSKLKNLSLEGLR--LDDPIVNTIAKNSNLVRLNLSMCSGFTE----NALQLLLSS  258 (419)
T ss_pred             hhHHhh-cchhheeHHHHHHHHHHHHhhhhccccccc--cCcHHHHHHhccccceeeccccccccch----hHHHHHHHh
Confidence            467777 666655222    24556777777777776  6666777777777777777777665532    11   3344


Q ss_pred             CCCCCceEEeeecccCCCCch-hhhc-CCCCceEEeccCCcc--CceeeecCCCCCccccEEEecCCccccc-eeccccc
Q 036414          115 FPPSLTQLSLSNTELIEDPMP-TLEK-LPHLEVLKLKQNSYF--ERKLACVGCSSFPQLKILHLKSMLWLEE-WTMGAGA  189 (252)
Q Consensus       115 ~~~~L~~l~l~~~~~~~~~~~-~l~~-~~~L~~L~l~~~~~~--~~~~~~~~~~~~~~L~~L~l~~~~~l~~-~~~~~~~  189 (252)
                      . +.|..|++++|........ ++.+ -++|+.|+++++.-.  ......- ...+|+|..||+++|.+++. ....+-.
T Consensus       259 c-s~L~~LNlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL-~~rcp~l~~LDLSD~v~l~~~~~~~~~k  336 (419)
T KOG2120|consen  259 C-SRLDELNLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTL-VRRCPNLVHLDLSDSVMLKNDCFQEFFK  336 (419)
T ss_pred             h-hhHhhcCchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHH-HHhCCceeeeccccccccCchHHHHHHh
Confidence            4 7777777777766533322 2222 346777777765421  1122222 35677777777777776653 2333456


Q ss_pred             cccccceeeccCCCCCCChH---HHHhccccceeecccCC
Q 036414          190 MPKLESLILNPCAYLRKLPE---ELWRIKSLCKLELHWPQ  226 (252)
Q Consensus       190 l~~L~~L~l~~~~~~~~~p~---~l~~l~~L~~L~l~~~~  226 (252)
                      |+.|++|+++.|...  .|.   .+...|+|.+|++.+|-
T Consensus       337 f~~L~~lSlsRCY~i--~p~~~~~l~s~psl~yLdv~g~v  374 (419)
T KOG2120|consen  337 FNYLQHLSLSRCYDI--IPETLLELNSKPSLVYLDVFGCV  374 (419)
T ss_pred             cchheeeehhhhcCC--ChHHeeeeccCcceEEEEecccc
Confidence            777777777777533  233   24556777777777764

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=99.05  E-value=6.8e-10  Score=100.46  Aligned_cols=124  Identities=16%  Similarity=0.104  Sum_probs=83.8

Q ss_pred             CccEEEeeccCCccccchhHhhhccCCCCeEEeeeccchhHHHHhhccccCCCCCCceEEeeecccCCCCchhhhcCCCC
Q 036414           64 TVQTLRISGDLSHYHSGVSKSLCELHKLECLKLANQGKMWQITRMILSEYKFPPSLTQLSLSNTELIEDPMPTLEKLPHL  143 (252)
Q Consensus        64 ~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~l~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~~~~L  143 (252)
                      +|+.|++++|.   ...+|..   ..+|+.|++.+ +.+..    +|.   .+++|+.|++++|.++. .|..   .++|
T Consensus       343 ~Lq~LdLS~N~---Ls~LP~l---p~~L~~L~Ls~-N~L~~----LP~---l~~~L~~LdLs~N~Lt~-LP~l---~s~L  404 (788)
T PRK15387        343 GLQELSVSDNQ---LASLPTL---PSELYKLWAYN-NRLTS----LPA---LPSGLKELIVSGNRLTS-LPVL---PSEL  404 (788)
T ss_pred             ccceEecCCCc---cCCCCCC---Ccccceehhhc-ccccc----Ccc---cccccceEEecCCcccC-CCCc---ccCC
Confidence            45556665553   2233321   23455555554 33433    442   23688999999998874 3332   4689


Q ss_pred             ceEEeccCCccCceeeecCCCCCccccEEEecCCccccceeccccccccccceeeccCCCCCCChHHHH
Q 036414          144 EVLKLKQNSYFERKLACVGCSSFPQLKILHLKSMLWLEEWTMGAGAMPKLESLILNPCAYLRKLPEELW  212 (252)
Q Consensus       144 ~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~~~~~~~~p~~l~  212 (252)
                      +.|++++|.+..  ++.    ...+|+.|++++|+ ++.+|..++.+++|+.|++++|+..+..+..+.
T Consensus       405 ~~LdLS~N~Lss--IP~----l~~~L~~L~Ls~Nq-Lt~LP~sl~~L~~L~~LdLs~N~Ls~~~~~~L~  466 (788)
T PRK15387        405 KELMVSGNRLTS--LPM----LPSGLLSLSVYRNQ-LTRLPESLIHLSSETTVNLEGNPLSERTLQALR  466 (788)
T ss_pred             CEEEccCCcCCC--CCc----chhhhhhhhhccCc-ccccChHHhhccCCCeEECCCCCCCchHHHHHH
Confidence            999999998764  221    23478999999999 999998888999999999999998776665553

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=99.02  E-value=6.5e-11  Score=88.53  Aligned_cols=131  Identities=24%  Similarity=0.244  Sum_probs=50.5

Q ss_pred             ccCCCCeEEeeeccchhHHHHhhcccc-CCCCCCceEEeeecccCCCCchhhhcCCCCceEEeccCCccCceeeecCCCC
Q 036414           87 ELHKLECLKLANQGKMWQITRMILSEY-KFPPSLTQLSLSNTELIEDPMPTLEKLPHLEVLKLKQNSYFERKLACVGCSS  165 (252)
Q Consensus        87 ~l~~L~~L~l~~~~~~~~~~~l~~~~~-~~~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~  165 (252)
                      +..++++|++.+ +.+..    +..+. .+ .+|+.|++++|.+..  ...+..+++|++|++++|.+......+  ...
T Consensus        17 n~~~~~~L~L~~-n~I~~----Ie~L~~~l-~~L~~L~Ls~N~I~~--l~~l~~L~~L~~L~L~~N~I~~i~~~l--~~~   86 (175)
T PF14580_consen   17 NPVKLRELNLRG-NQIST----IENLGATL-DKLEVLDLSNNQITK--LEGLPGLPRLKTLDLSNNRISSISEGL--DKN   86 (175)
T ss_dssp             ------------------------S--TT--TT--EEE-TTS--S----TT----TT--EEE--SS---S-CHHH--HHH
T ss_pred             cccccccccccc-ccccc----ccchhhhh-cCCCEEECCCCCCcc--ccCccChhhhhhcccCCCCCCccccch--HHh
Confidence            334577777777 55544    34444 35 778888888888763  334666788888888888776532111  125


Q ss_pred             CccccEEEecCCcccccee--ccccccccccceeeccCCCCCC---ChHHHHhccccceeecccCCHH
Q 036414          166 FPQLKILHLKSMLWLEEWT--MGAGAMPKLESLILNPCAYLRK---LPEELWRIKSLCKLELHWPQPE  228 (252)
Q Consensus       166 ~~~L~~L~l~~~~~l~~~~--~~~~~l~~L~~L~l~~~~~~~~---~p~~l~~l~~L~~L~l~~~~~~  228 (252)
                      +|+|+.|.+++|+ +.++.  ...+.+|+|+.|++.+|+..+.   ....+..+|+|+.||-..+.++
T Consensus        87 lp~L~~L~L~~N~-I~~l~~l~~L~~l~~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD~~~V~~~  153 (175)
T PF14580_consen   87 LPNLQELYLSNNK-ISDLNELEPLSSLPKLRVLSLEGNPVCEKKNYRLFVIYKLPSLKVLDGQDVTEE  153 (175)
T ss_dssp             -TT--EEE-TTS----SCCCCGGGGG-TT--EEE-TT-GGGGSTTHHHHHHHH-TT-SEETTEETTS-
T ss_pred             CCcCCEEECcCCc-CCChHHhHHHHcCCCcceeeccCCcccchhhHHHHHHHHcChhheeCCEEccHH
Confidence            7888888888888 66552  2356788888888888886542   2345788999999998877643

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]

Probab=98.99  E-value=9.8e-11  Score=96.61  Aligned_cols=217  Identities=18%  Similarity=0.170  Sum_probs=134.0

Q ss_pred             CCCccccch--HHHhhccccEEEecCCCCCC--CCCcccCCCCCCcEecccCCCCC-chhh---cCCCCCccEEEeeccC
Q 036414            3 SSYIDHSSE--DIWMMQKLMHLNFGSITLPA--PPKNYSSSLKNLIFISALHPSSC-TPDI---LSRLPTVQTLRISGDL   74 (252)
Q Consensus         3 ~~~l~~lp~--~i~~l~~L~~L~l~~~~~~~--~~~~~l~~l~~L~~L~~l~~~~~-~~~~---l~~l~~L~~L~l~~~~   74 (252)
                      ++.++-.+.  ....|++++.||++.|-+..  .+......+++|+.|. ++.|.. .+.+   -..+++|++|.++.|.
T Consensus       130 n~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LN-ls~Nrl~~~~~s~~~~~l~~lK~L~l~~CG  208 (505)
T KOG3207|consen  130 NYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLN-LSSNRLSNFISSNTTLLLSHLKQLVLNSCG  208 (505)
T ss_pred             CccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcc-cccccccCCccccchhhhhhhheEEeccCC
Confidence            344444443  45677888888888554332  2334456778888888 777765 2211   2347788888888885


Q ss_pred             CccccchhHhhhccCCCCeEEeeeccchhHHHHhhc-cccCCCCCCceEEeeecccCCCC-chhhhcCCCCceEEeccCC
Q 036414           75 SHYHSGVSKSLCELHKLECLKLANQGKMWQITRMIL-SEYKFPPSLTQLSLSNTELIEDP-MPTLEKLPHLEVLKLKQNS  152 (252)
Q Consensus        75 ~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~l~~-~~~~~~~~L~~l~l~~~~~~~~~-~~~l~~~~~L~~L~l~~~~  152 (252)
                       .....+-..+..+|+|+.|++..|+.+..    .. ...-+ ..|+.|+|++|++.... ....+.++.|..|+++.++
T Consensus       209 -ls~k~V~~~~~~fPsl~~L~L~~N~~~~~----~~~~~~i~-~~L~~LdLs~N~li~~~~~~~~~~l~~L~~Lnls~tg  282 (505)
T KOG3207|consen  209 -LSWKDVQWILLTFPSLEVLYLEANEIILI----KATSTKIL-QTLQELDLSNNNLIDFDQGYKVGTLPGLNQLNLSSTG  282 (505)
T ss_pred             -CCHHHHHHHHHhCCcHHHhhhhcccccce----ecchhhhh-hHHhhccccCCcccccccccccccccchhhhhccccC
Confidence             12333444556778888888888543311    01 11223 67888999988765333 3566888999999998888


Q ss_pred             ccCceeeec----CCCCCccccEEEecCCccccceec--cccccccccceeeccCCCCCCCh----HHHHhccccceeec
Q 036414          153 YFERKLACV----GCSSFPQLKILHLKSMLWLEEWTM--GAGAMPKLESLILNPCAYLRKLP----EELWRIKSLCKLEL  222 (252)
Q Consensus       153 ~~~~~~~~~----~~~~~~~L~~L~l~~~~~l~~~~~--~~~~l~~L~~L~l~~~~~~~~~p----~~l~~l~~L~~L~l  222 (252)
                      +.....+..    ....+|+|++|++..|+ +.+|+.  ....+++|+.|.+..+...++-.    ..+...++|..|+=
T Consensus       283 i~si~~~d~~s~~kt~~f~kL~~L~i~~N~-I~~w~sl~~l~~l~nlk~l~~~~n~ln~e~~~a~~~VIAr~~~l~~LN~  361 (505)
T KOG3207|consen  283 IASIAEPDVESLDKTHTFPKLEYLNISENN-IRDWRSLNHLRTLENLKHLRITLNYLNKETDTAKLLVIARISQLVKLND  361 (505)
T ss_pred             cchhcCCCccchhhhcccccceeeecccCc-cccccccchhhccchhhhhhcccccccccccceeEEeeeehhhhhhhcc
Confidence            765332210    03568999999999998 766643  24556778888887776543111    12344556666655


Q ss_pred             ccCCH
Q 036414          223 HWPQP  227 (252)
Q Consensus       223 ~~~~~  227 (252)
                      .+|.+
T Consensus       362 ~di~p  366 (505)
T KOG3207|consen  362 VDISP  366 (505)
T ss_pred             cccCh
Confidence            55543

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=98.99  E-value=2.1e-10  Score=85.78  Aligned_cols=129  Identities=26%  Similarity=0.289  Sum_probs=46.1

Q ss_pred             CCCCccEEEeeccCCccccchhHhhh-ccCCCCeEEeeeccchhHHHHhhccccCCCCCCceEEeeecccCCCCchhhhc
Q 036414           61 RLPTVQTLRISGDLSHYHSGVSKSLC-ELHKLECLKLANQGKMWQITRMILSEYKFPPSLTQLSLSNTELIEDPMPTLEK  139 (252)
Q Consensus        61 ~l~~L~~L~l~~~~~~~~~~~~~~l~-~l~~L~~L~l~~~~~~~~~~~l~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~  139 (252)
                      +...+++|+|.++.   ...+ +.+. .+.+|+.|++++ +.+..    ++.+..+ +.|+.|++++|.++.........
T Consensus        17 n~~~~~~L~L~~n~---I~~I-e~L~~~l~~L~~L~Ls~-N~I~~----l~~l~~L-~~L~~L~L~~N~I~~i~~~l~~~   86 (175)
T PF14580_consen   17 NPVKLRELNLRGNQ---ISTI-ENLGATLDKLEVLDLSN-NQITK----LEGLPGL-PRLKTLDLSNNRISSISEGLDKN   86 (175)
T ss_dssp             -----------------------S--TT-TT--EEE-TT-S--S------TT-----TT--EEE--SS---S-CHHHHHH
T ss_pred             cccccccccccccc---cccc-cchhhhhcCCCEEECCC-CCCcc----ccCccCh-hhhhhcccCCCCCCccccchHHh
Confidence            34456777777773   2322 2333 456777777777 55544    5556666 88888888888887433322246


Q ss_pred             CCCCceEEeccCCccCceeeecCCCCCccccEEEecCCcccccee----ccccccccccceeeccC
Q 036414          140 LPHLEVLKLKQNSYFERKLACVGCSSFPQLKILHLKSMLWLEEWT----MGAGAMPKLESLILNPC  201 (252)
Q Consensus       140 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~----~~~~~l~~L~~L~l~~~  201 (252)
                      +++|++|.+++|.+....-... ...+|+|+.|++.+|+ +..-+    ..+..+|+|+.|+-...
T Consensus        87 lp~L~~L~L~~N~I~~l~~l~~-L~~l~~L~~L~L~~NP-v~~~~~YR~~vi~~lP~Lk~LD~~~V  150 (175)
T PF14580_consen   87 LPNLQELYLSNNKISDLNELEP-LSSLPKLRVLSLEGNP-VCEKKNYRLFVIYKLPSLKVLDGQDV  150 (175)
T ss_dssp             -TT--EEE-TTS---SCCCCGG-GGG-TT--EEE-TT-G-GGGSTTHHHHHHHH-TT-SEETTEET
T ss_pred             CCcCCEEECcCCcCCChHHhHH-HHcCCCcceeeccCCc-ccchhhHHHHHHHHcChhheeCCEEc
Confidence            7888888888887755333333 5678888888888888 55321    22456788888876543

>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]

Probab=98.96  E-value=1.4e-11  Score=104.57  Aligned_cols=167  Identities=20%  Similarity=0.258  Sum_probs=108.9

Q ss_pred             cEEEecCCCCCCCCCcccCCCCCCcEecccCCCCC--chhhcCCCCCccEEEeeccCCccccchhHhhhccCCCCeEEee
Q 036414           20 MHLNFGSITLPAPPKNYSSSLKNLIFISALHPSSC--TPDILSRLPTVQTLRISGDLSHYHSGVSKSLCELHKLECLKLA   97 (252)
Q Consensus        20 ~~L~l~~~~~~~~~~~~l~~l~~L~~L~~l~~~~~--~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~   97 (252)
                      ...|++.|.+ .++|..++.+..|+.+. ++.+.+  +|..++.+..|+.++++.|   ....+|..++.|+ |+.|-++
T Consensus        78 ~~aDlsrNR~-~elp~~~~~f~~Le~li-Ly~n~~r~ip~~i~~L~~lt~l~ls~N---qlS~lp~~lC~lp-Lkvli~s  151 (722)
T KOG0532|consen   78 VFADLSRNRF-SELPEEACAFVSLESLI-LYHNCIRTIPEAICNLEALTFLDLSSN---QLSHLPDGLCDLP-LKVLIVS  151 (722)
T ss_pred             hhhhcccccc-ccCchHHHHHHHHHHHH-HHhccceecchhhhhhhHHHHhhhccc---hhhcCChhhhcCc-ceeEEEe
Confidence            3455553333 35666666666666666 555554  6767777777777777777   5666777777776 7777666


Q ss_pred             eccchhHHHHhhc-cccCCCCCCceEEeeecccCCCCchhhhcCCCCceEEeccCCccCceeeecCCCCCccccEEEecC
Q 036414           98 NQGKMWQITRMIL-SEYKFPPSLTQLSLSNTELIEDPMPTLEKLPHLEVLKLKQNSYFERKLACVGCSSFPQLKILHLKS  176 (252)
Q Consensus        98 ~~~~~~~~~~l~~-~~~~~~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~  176 (252)
                      + +++..    +| .++.. ..|..+|.+.|.+. ..|.-++.+.+|+.|++..|++..  ++.+ .+.+| |..||+++
T Consensus       152 N-Nkl~~----lp~~ig~~-~tl~~ld~s~nei~-slpsql~~l~slr~l~vrRn~l~~--lp~E-l~~Lp-Li~lDfSc  220 (722)
T KOG0532|consen  152 N-NKLTS----LPEEIGLL-PTLAHLDVSKNEIQ-SLPSQLGYLTSLRDLNVRRNHLED--LPEE-LCSLP-LIRLDFSC  220 (722)
T ss_pred             c-Ccccc----CCcccccc-hhHHHhhhhhhhhh-hchHHhhhHHHHHHHHHhhhhhhh--CCHH-HhCCc-eeeeeccc
Confidence            6 55544    56 66655 77777777777665 566666777777777777666643  3323 34333 77777777


Q ss_pred             CccccceeccccccccccceeeccCCCC
Q 036414          177 MLWLEEWTMGAGAMPKLESLILNPCAYL  204 (252)
Q Consensus       177 ~~~l~~~~~~~~~l~~L~~L~l~~~~~~  204 (252)
                      |+ +..+|..+..+..|++|-+.+|+..
T Consensus       221 Nk-is~iPv~fr~m~~Lq~l~LenNPLq  247 (722)
T KOG0532|consen  221 NK-ISYLPVDFRKMRHLQVLQLENNPLQ  247 (722)
T ss_pred             Cc-eeecchhhhhhhhheeeeeccCCCC
Confidence            77 7777777777777777777777654

>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]

Probab=98.93  E-value=4e-11  Score=97.78  Aligned_cols=93  Identities=17%  Similarity=0.196  Sum_probs=69.5

Q ss_pred             CCCcccc-chHHHhhccccEEEecCCCCCCCCCc-ccCCCCCCcEecccCCCCC---chhhcCCCCCccEEEeeccCCcc
Q 036414            3 SSYIDHS-SEDIWMMQKLMHLNFGSITLPAPPKN-YSSSLKNLIFISALHPSSC---TPDILSRLPTVQTLRISGDLSHY   77 (252)
Q Consensus         3 ~~~l~~l-p~~i~~l~~L~~L~l~~~~~~~~~~~-~l~~l~~L~~L~~l~~~~~---~~~~l~~l~~L~~L~l~~~~~~~   77 (252)
                      .|.|+.| |+++..+..|..|-+.+++....+|. .|++|..++.|. ++-+++   ..+.+..++++..|.+.++   .
T Consensus       100 ~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqrLl-lNan~i~Cir~~al~dL~~l~lLslyDn---~  175 (498)
T KOG4237|consen  100 KNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQRLL-LNANHINCIRQDALRDLPSLSLLSLYDN---K  175 (498)
T ss_pred             ccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHHHHh-cChhhhcchhHHHHHHhhhcchhcccch---h
Confidence            5778888 77899999999988877555555554 578899999998 776665   4444788999999999988   4


Q ss_pred             ccchhH-hhhccCCCCeEEeeec
Q 036414           78 HSGVSK-SLCELHKLECLKLANQ   99 (252)
Q Consensus        78 ~~~~~~-~l~~l~~L~~L~l~~~   99 (252)
                      ...++. .+..+.+++.+.+..+
T Consensus       176 ~q~i~~~tf~~l~~i~tlhlA~n  198 (498)
T KOG4237|consen  176 IQSICKGTFQGLAAIKTLHLAQN  198 (498)
T ss_pred             hhhhccccccchhccchHhhhcC
Confidence            555554 5667777777777663

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]

Probab=98.89  E-value=3e-10  Score=93.78  Aligned_cols=81  Identities=21%  Similarity=0.256  Sum_probs=37.7

Q ss_pred             CCCceEEeccCCccCceeeecCCCCCccccEEEecCCccccce--ecc-----ccccccccceeeccCCCCCCChH--HH
Q 036414          141 PHLEVLKLKQNSYFERKLACVGCSSFPQLKILHLKSMLWLEEW--TMG-----AGAMPKLESLILNPCAYLRKLPE--EL  211 (252)
Q Consensus       141 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~--~~~-----~~~l~~L~~L~l~~~~~~~~~p~--~l  211 (252)
                      ..|++|++++|.+........ .+.+|.|..|.++.+. +.++  +..     ...+++|+.|.+..|+.. .|+.  .+
T Consensus       246 ~~L~~LdLs~N~li~~~~~~~-~~~l~~L~~Lnls~tg-i~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~-~w~sl~~l  322 (505)
T KOG3207|consen  246 QTLQELDLSNNNLIDFDQGYK-VGTLPGLNQLNLSSTG-IASIAEPDVESLDKTHTFPKLEYLNISENNIR-DWRSLNHL  322 (505)
T ss_pred             hHHhhccccCCcccccccccc-cccccchhhhhccccC-cchhcCCCccchhhhcccccceeeecccCccc-cccccchh
Confidence            345555555555433222222 4555555555555555 4433  111     123556666666665542 2332  34


Q ss_pred             Hhccccceeeccc
Q 036414          212 WRIKSLCKLELHW  224 (252)
Q Consensus       212 ~~l~~L~~L~l~~  224 (252)
                      ..+++|+.|.+..
T Consensus       323 ~~l~nlk~l~~~~  335 (505)
T KOG3207|consen  323 RTLENLKHLRITL  335 (505)
T ss_pred             hccchhhhhhccc
Confidence            4455555555443

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=98.88  E-value=3.1e-09  Score=90.68  Aligned_cols=180  Identities=23%  Similarity=0.299  Sum_probs=119.5

Q ss_pred             chHHHhhccccEEEecCCCCCCCCCcccCCCC-CCcEecccCCCCC--chhhcCCCCCccEEEeeccCCccccchhHhhh
Q 036414           10 SEDIWMMQKLMHLNFGSITLPAPPKNYSSSLK-NLIFISALHPSSC--TPDILSRLPTVQTLRISGDLSHYHSGVSKSLC   86 (252)
Q Consensus        10 p~~i~~l~~L~~L~l~~~~~~~~~~~~l~~l~-~L~~L~~l~~~~~--~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~   86 (252)
                      +..+..++.++.|++.++. ...+++....+. +|+.|+ ++.+..  ++..++.+++|+.|+++.|   ....++....
T Consensus       109 ~~~~~~~~~l~~L~l~~n~-i~~i~~~~~~~~~nL~~L~-l~~N~i~~l~~~~~~l~~L~~L~l~~N---~l~~l~~~~~  183 (394)
T COG4886         109 ISELLELTNLTSLDLDNNN-ITDIPPLIGLLKSNLKELD-LSDNKIESLPSPLRNLPNLKNLDLSFN---DLSDLPKLLS  183 (394)
T ss_pred             chhhhcccceeEEecCCcc-cccCccccccchhhccccc-ccccchhhhhhhhhccccccccccCCc---hhhhhhhhhh
Confidence            4445556677778777444 345666566664 788888 777776  4456777888888888887   4566666655


Q ss_pred             ccCCCCeEEeeeccchhHHHHhhccc-cCCCCCCceEEeeecccCCCCchhhhcCCCCceEEeccCCccCceeeecCCCC
Q 036414           87 ELHKLECLKLANQGKMWQITRMILSE-YKFPPSLTQLSLSNTELIEDPMPTLEKLPHLEVLKLKQNSYFERKLACVGCSS  165 (252)
Q Consensus        87 ~l~~L~~L~l~~~~~~~~~~~l~~~~-~~~~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~  165 (252)
                      ..++|+.+++++ +.+..    +|.. ... ..|+.+.+.++... ..+..+..+.++..+.+..+.....  ... .+.
T Consensus       184 ~~~~L~~L~ls~-N~i~~----l~~~~~~~-~~L~~l~~~~N~~~-~~~~~~~~~~~l~~l~l~~n~~~~~--~~~-~~~  253 (394)
T COG4886         184 NLSNLNNLDLSG-NKISD----LPPEIELL-SALEELDLSNNSII-ELLSSLSNLKNLSGLELSNNKLEDL--PES-IGN  253 (394)
T ss_pred             hhhhhhheeccC-Ccccc----Cchhhhhh-hhhhhhhhcCCcce-ecchhhhhcccccccccCCceeeec--cch-hcc
Confidence            777788888877 55555    5532 333 55788877777433 3555566677777777665555331  222 556


Q ss_pred             CccccEEEecCCccccceeccccccccccceeeccCCCCCC
Q 036414          166 FPQLKILHLKSMLWLEEWTMGAGAMPKLESLILNPCAYLRK  206 (252)
Q Consensus       166 ~~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~~~~~~~  206 (252)
                      ++++++|++++|. ++.++. .+.+.+++.|+++++.....
T Consensus       254 l~~l~~L~~s~n~-i~~i~~-~~~~~~l~~L~~s~n~~~~~  292 (394)
T COG4886         254 LSNLETLDLSNNQ-ISSISS-LGSLTNLRELDLSGNSLSNA  292 (394)
T ss_pred             ccccceecccccc-cccccc-ccccCccCEEeccCcccccc
Confidence            7778888888888 777766 67777888888888765543

>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]

Probab=98.87  E-value=2.9e-10  Score=96.82  Aligned_cols=159  Identities=20%  Similarity=0.252  Sum_probs=111.8

Q ss_pred             CCccccchHHHhhccccEEEecCCCCCCCCCcccCCCCCCcEecccCCCCC--chhhcCCCCCccEEEeeccCCccccch
Q 036414            4 SYIDHSSEDIWMMQKLMHLNFGSITLPAPPKNYSSSLKNLIFISALHPSSC--TPDILSRLPTVQTLRISGDLSHYHSGV   81 (252)
Q Consensus         4 ~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~~l~~~~~--~~~~l~~l~~L~~L~l~~~~~~~~~~~   81 (252)
                      |.+..+|.+++++..|+++|++.|.+ ..+|..++.|+ |+.|- +..++.  +|++++...+|..|+.+.|   ....+
T Consensus       108 n~~r~ip~~i~~L~~lt~l~ls~Nql-S~lp~~lC~lp-Lkvli-~sNNkl~~lp~~ig~~~tl~~ld~s~n---ei~sl  181 (722)
T KOG0532|consen  108 NCIRTIPEAICNLEALTFLDLSSNQL-SHLPDGLCDLP-LKVLI-VSNNKLTSLPEEIGLLPTLAHLDVSKN---EIQSL  181 (722)
T ss_pred             ccceecchhhhhhhHHHHhhhccchh-hcCChhhhcCc-ceeEE-EecCccccCCcccccchhHHHhhhhhh---hhhhc
Confidence            56677788888888888888885544 35777777777 77777 666665  7777887778888888887   56677


Q ss_pred             hHhhhccCCCCeEEeeeccchhHHHHhhc-cccCCCCCCceEEeeecccCCCCchhhhcCCCCceEEeccCCccCceee-
Q 036414           82 SKSLCELHKLECLKLANQGKMWQITRMIL-SEYKFPPSLTQLSLSNTELIEDPMPTLEKLPHLEVLKLKQNSYFERKLA-  159 (252)
Q Consensus        82 ~~~l~~l~~L~~L~l~~~~~~~~~~~l~~-~~~~~~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~-  159 (252)
                      |..++.+.+|+.+.+.. +.+..    +| .+..+  .|..||++.|++. ..|..|..+..|++|-|..|.+...... 
T Consensus       182 psql~~l~slr~l~vrR-n~l~~----lp~El~~L--pLi~lDfScNkis-~iPv~fr~m~~Lq~l~LenNPLqSPPAqI  253 (722)
T KOG0532|consen  182 PSQLGYLTSLRDLNVRR-NHLED----LPEELCSL--PLIRLDFSCNKIS-YLPVDFRKMRHLQVLQLENNPLQSPPAQI  253 (722)
T ss_pred             hHHhhhHHHHHHHHHhh-hhhhh----CCHHHhCC--ceeeeecccCcee-ecchhhhhhhhheeeeeccCCCCCChHHH
Confidence            77888888888888877 55655    66 56554  6778888888777 6777788888888888876665442221 


Q ss_pred             ecCCCCCccccEEEecCC
Q 036414          160 CVGCSSFPQLKILHLKSM  177 (252)
Q Consensus       160 ~~~~~~~~~L~~L~l~~~  177 (252)
                      +. -+...-.++|+..-|
T Consensus       254 C~-kGkVHIFKyL~~qA~  270 (722)
T KOG0532|consen  254 CE-KGKVHIFKYLSTQAC  270 (722)
T ss_pred             Hh-ccceeeeeeecchhc
Confidence            11 334445566666555

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]

Probab=98.82  E-value=7.3e-10  Score=87.81  Aligned_cols=128  Identities=27%  Similarity=0.288  Sum_probs=91.1

Q ss_pred             CCCccEEEeeccCCccccchhHhhhccCCCCeEEeeeccchhHHHHhhccccCCCCCCceEEeeecccCCCCchhhhcCC
Q 036414           62 LPTVQTLRISGDLSHYHSGVSKSLCELHKLECLKLANQGKMWQITRMILSEYKFPPSLTQLSLSNTELIEDPMPTLEKLP  141 (252)
Q Consensus        62 l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~l~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~~~  141 (252)
                      ++.|++++++.|   ....+-++..-.|.++.|+++. +.+..    +..++.+ ++|+.||+++|.++ ....+-..+.
T Consensus       283 Wq~LtelDLS~N---~I~~iDESvKL~Pkir~L~lS~-N~i~~----v~nLa~L-~~L~~LDLS~N~Ls-~~~Gwh~KLG  352 (490)
T KOG1259|consen  283 WQELTELDLSGN---LITQIDESVKLAPKLRRLILSQ-NRIRT----VQNLAEL-PQLQLLDLSGNLLA-ECVGWHLKLG  352 (490)
T ss_pred             Hhhhhhcccccc---chhhhhhhhhhccceeEEeccc-cceee----ehhhhhc-ccceEeecccchhH-hhhhhHhhhc
Confidence            456788888888   5566666666678888888887 55433    2355666 88888888888665 3333334567


Q ss_pred             CCceEEeccCCccCceeeecCCCCCccccEEEecCCccccce--eccccccccccceeeccCCCC
Q 036414          142 HLEVLKLKQNSYFERKLACVGCSSFPQLKILHLKSMLWLEEW--TMGAGAMPKLESLILNPCAYL  204 (252)
Q Consensus       142 ~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~--~~~~~~l~~L~~L~l~~~~~~  204 (252)
                      |.++|.+++|.+..    .+|...+-+|..||+++|+ +..+  ...+|.+|.|+.+.+.+|+..
T Consensus       353 NIKtL~La~N~iE~----LSGL~KLYSLvnLDl~~N~-Ie~ldeV~~IG~LPCLE~l~L~~NPl~  412 (490)
T KOG1259|consen  353 NIKTLKLAQNKIET----LSGLRKLYSLVNLDLSSNQ-IEELDEVNHIGNLPCLETLRLTGNPLA  412 (490)
T ss_pred             CEeeeehhhhhHhh----hhhhHhhhhheeccccccc-hhhHHHhcccccccHHHHHhhcCCCcc
Confidence            78888888777632    2346677789999999998 7654  345788999999999998864

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]

Probab=98.79  E-value=4e-09  Score=97.26  Aligned_cols=91  Identities=18%  Similarity=0.183  Sum_probs=70.6

Q ss_pred             ccccchH-HHhhccccEEEecCCCCCCCCCcccCCCCCCcEecccCCCCC--chhhcCCCCCccEEEeeccCCccccchh
Q 036414            6 IDHSSED-IWMMQKLMHLNFGSITLPAPPKNYSSSLKNLIFISALHPSSC--TPDILSRLPTVQTLRISGDLSHYHSGVS   82 (252)
Q Consensus         6 l~~lp~~-i~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~~l~~~~~--~~~~l~~l~~L~~L~l~~~~~~~~~~~~   82 (252)
                      +..++.. +..++.|++||+++|....++|..+++|-+||.|+ ++.+..  +|.+++++..|.+|++..+.  ....++
T Consensus       559 l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~-L~~t~I~~LP~~l~~Lk~L~~Lnl~~~~--~l~~~~  635 (889)
T KOG4658|consen  559 LLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLD-LSDTGISHLPSGLGNLKKLIYLNLEVTG--RLESIP  635 (889)
T ss_pred             hhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhccc-ccCCCccccchHHHHHHhhheecccccc--cccccc
Confidence            5556554 56788888888888877788888888888888888 887777  78888888888888888775  444456


Q ss_pred             HhhhccCCCCeEEeeec
Q 036414           83 KSLCELHKLECLKLANQ   99 (252)
Q Consensus        83 ~~l~~l~~L~~L~l~~~   99 (252)
                      .....+++||+|.+...
T Consensus       636 ~i~~~L~~Lr~L~l~~s  652 (889)
T KOG4658|consen  636 GILLELQSLRVLRLPRS  652 (889)
T ss_pred             chhhhcccccEEEeecc
Confidence            66677888888888763

>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]

Probab=98.78  E-value=1.3e-09  Score=87.73  Aligned_cols=85  Identities=25%  Similarity=0.259  Sum_probs=42.1

Q ss_pred             HHhhccccEEEecCCCCCCC----CCcccCCCCCCcEecccCC---CCC---ch-------hhcCCCCCccEEEeeccC-
Q 036414           13 IWMMQKLMHLNFGSITLPAP----PKNYSSSLKNLIFISALHP---SSC---TP-------DILSRLPTVQTLRISGDL-   74 (252)
Q Consensus        13 i~~l~~L~~L~l~~~~~~~~----~~~~l~~l~~L~~L~~l~~---~~~---~~-------~~l~~l~~L~~L~l~~~~-   74 (252)
                      +.....++++++++|++...    +...+...++|+... ++.   ...   .|       +.+-.+++|++++||+|- 
T Consensus        26 ~~~~~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~-~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA~  104 (382)
T KOG1909|consen   26 LEPMDSLTKLDLSGNTFGTEAARAIAKVLASKKELREVN-LSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNAF  104 (382)
T ss_pred             hcccCceEEEeccCCchhHHHHHHHHHHHhhcccceeee-hHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeecccccc
Confidence            34556677777777776543    223344444555444 211   000   12       223345667777777665 


Q ss_pred             -CccccchhHhhhccCCCCeEEeee
Q 036414           75 -SHYHSGVSKSLCELHKLECLKLAN   98 (252)
Q Consensus        75 -~~~~~~~~~~l~~l~~L~~L~l~~   98 (252)
                       ......+-..+.++.+|++|++.+
T Consensus       105 G~~g~~~l~~ll~s~~~L~eL~L~N  129 (382)
T KOG1909|consen  105 GPKGIRGLEELLSSCTDLEELYLNN  129 (382)
T ss_pred             CccchHHHHHHHHhccCHHHHhhhc
Confidence             111122223345566677777766

>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]

Probab=98.76  E-value=3.3e-09  Score=85.39  Aligned_cols=137  Identities=17%  Similarity=0.194  Sum_probs=60.6

Q ss_pred             HHhhccccEEEecCCCCCCCCCcc----cCCCCCCcEecccCCCCCchhh----------------cCCCCCccEEEeec
Q 036414           13 IWMMQKLMHLNFGSITLPAPPKNY----SSSLKNLIFISALHPSSCTPDI----------------LSRLPTVQTLRISG   72 (252)
Q Consensus        13 i~~l~~L~~L~l~~~~~~~~~~~~----l~~l~~L~~L~~l~~~~~~~~~----------------l~~l~~L~~L~l~~   72 (252)
                      +-.+++|++++++.|.+....+..    +..+..|++|. +.+|...|..                +++-+.||.+...+
T Consensus        88 L~~~~~L~~ldLSDNA~G~~g~~~l~~ll~s~~~L~eL~-L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~r  166 (382)
T KOG1909|consen   88 LLGCPKLQKLDLSDNAFGPKGIRGLEELLSSCTDLEELY-LNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGR  166 (382)
T ss_pred             HhcCCceeEeeccccccCccchHHHHHHHHhccCHHHHh-hhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeec
Confidence            344456666666666555433332    34455566666 5555542222                12234555555555


Q ss_pred             cC--CccccchhHhhhccCCCCeEEeeeccch--hHHHHhhc-cccCCCCCCceEEeeecccCCCCc----hhhhcCCCC
Q 036414           73 DL--SHYHSGVSKSLCELHKLECLKLANQGKM--WQITRMIL-SEYKFPPSLTQLSLSNTELIEDPM----PTLEKLPHL  143 (252)
Q Consensus        73 ~~--~~~~~~~~~~l~~l~~L~~L~l~~~~~~--~~~~~l~~-~~~~~~~~L~~l~l~~~~~~~~~~----~~l~~~~~L  143 (252)
                      |+  ......+...+...+.|+.+.+.. +.+  .... ++. .+... ++|+.||+++|-++...-    .++..|++|
T Consensus       167 Nrlen~ga~~~A~~~~~~~~leevr~~q-N~I~~eG~~-al~eal~~~-~~LevLdl~DNtft~egs~~LakaL~s~~~L  243 (382)
T KOG1909|consen  167 NRLENGGATALAEAFQSHPTLEEVRLSQ-NGIRPEGVT-ALAEALEHC-PHLEVLDLRDNTFTLEGSVALAKALSSWPHL  243 (382)
T ss_pred             cccccccHHHHHHHHHhccccceEEEec-ccccCchhH-HHHHHHHhC-CcceeeecccchhhhHHHHHHHHHhcccchh
Confidence            54  112222333444455555555555 322  0000 011 22332 555555555554442221    223345555


Q ss_pred             ceEEeccCCc
Q 036414          144 EVLKLKQNSY  153 (252)
Q Consensus       144 ~~L~l~~~~~  153 (252)
                      +++++++|.+
T Consensus       244 ~El~l~dcll  253 (382)
T KOG1909|consen  244 RELNLGDCLL  253 (382)
T ss_pred             eeeccccccc
Confidence            5555555443

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]

Probab=98.75  E-value=9.2e-10  Score=87.04  Aligned_cols=197  Identities=18%  Similarity=0.145  Sum_probs=138.2

Q ss_pred             cccEEEecCCCCCC-CCCcccCCCCCCcEecccCCCCC---chhhcCCCCCccEEEeeccCCccccchhHhhhccCCCCe
Q 036414           18 KLMHLNFGSITLPA-PPKNYSSSLKNLIFISALHPSSC---TPDILSRLPTVQTLRISGDLSHYHSGVSKSLCELHKLEC   93 (252)
Q Consensus        18 ~L~~L~l~~~~~~~-~~~~~l~~l~~L~~L~~l~~~~~---~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~   93 (252)
                      .|++||++...+.. .+-.-+..+.+|+.|. +.+...   +...+.+-.+|+.++++++.+.....+--.+..++.|..
T Consensus       186 Rlq~lDLS~s~it~stl~~iLs~C~kLk~lS-lEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~  264 (419)
T KOG2120|consen  186 RLQHLDLSNSVITVSTLHGILSQCSKLKNLS-LEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDE  264 (419)
T ss_pred             hhHHhhcchhheeHHHHHHHHHHHHhhhhcc-ccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhh
Confidence            58999999433332 3444467888899888 666655   666688899999999999975454555556788999999


Q ss_pred             EEeeeccchhHHHHhhc-cccCCCCCCceEEeeecc--cCCCCchhh-hcCCCCceEEeccCCccCceeeecCCCCCccc
Q 036414           94 LKLANQGKMWQITRMIL-SEYKFPPSLTQLSLSNTE--LIEDPMPTL-EKLPHLEVLKLKQNSYFERKLACVGCSSFPQL  169 (252)
Q Consensus        94 L~l~~~~~~~~~~~l~~-~~~~~~~~L~~l~l~~~~--~~~~~~~~l-~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L  169 (252)
                      |++++|....+.   +. .+.+..++|+.|+++|+.  +.......+ ..+|+|.+|+++++.......... +-.|+.|
T Consensus       265 LNlsWc~l~~~~---Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~-~~kf~~L  340 (419)
T KOG2120|consen  265 LNLSWCFLFTEK---VTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQE-FFKFNYL  340 (419)
T ss_pred             cCchHhhccchh---hhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHH-HHhcchh
Confidence            999996554321   23 444445799999999973  333455554 679999999999876544333333 6689999


Q ss_pred             cEEEecCCcccc-ceeccccccccccceeeccCCCCCCChHHHHhccccce
Q 036414          170 KILHLKSMLWLE-EWTMGAGAMPKLESLILNPCAYLRKLPEELWRIKSLCK  219 (252)
Q Consensus       170 ~~L~l~~~~~l~-~~~~~~~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~  219 (252)
                      ++|.++.|..+. +.-..+...|+|.+|++.||-.........+.+++++.
T Consensus       341 ~~lSlsRCY~i~p~~~~~l~s~psl~yLdv~g~vsdt~mel~~e~~~~lki  391 (419)
T KOG2120|consen  341 QHLSLSRCYDIIPETLLELNSKPSLVYLDVFGCVSDTTMELLKEMLSHLKI  391 (419)
T ss_pred             eeeehhhhcCCChHHeeeeccCcceEEEEeccccCchHHHHHHHhCccccc
Confidence            999999999554 23345678899999999998643333223345565543

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]

Probab=98.73  E-value=1.4e-08  Score=93.65  Aligned_cols=95  Identities=23%  Similarity=0.246  Sum_probs=75.0

Q ss_pred             CCccccchHHHhhccccEEEecCCCCCCCCCcccCCCCCCcEecccCCCCC---chhhcCCCCCccEEEeeccCCccccc
Q 036414            4 SYIDHSSEDIWMMQKLMHLNFGSITLPAPPKNYSSSLKNLIFISALHPSSC---TPDILSRLPTVQTLRISGDLSHYHSG   80 (252)
Q Consensus         4 ~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~~l~~~~~---~~~~l~~l~~L~~L~l~~~~~~~~~~   80 (252)
                      ..+.+||.+|+.+-+||+|+++ .+....+|.++.++..|.+|+ +..+..   .+.....+++||+|.+..........
T Consensus       582 ~~l~~LP~~I~~Li~LryL~L~-~t~I~~LP~~l~~Lk~L~~Ln-l~~~~~l~~~~~i~~~L~~Lr~L~l~~s~~~~~~~  659 (889)
T KOG4658|consen  582 SSLSKLPSSIGELVHLRYLDLS-DTGISHLPSGLGNLKKLIYLN-LEVTGRLESIPGILLELQSLRVLRLPRSALSNDKL  659 (889)
T ss_pred             CccCcCChHHhhhhhhhccccc-CCCccccchHHHHHHhhheec-cccccccccccchhhhcccccEEEeeccccccchh
Confidence            4678999999999999999999 555558999999999999999 777664   33335559999999997764335555


Q ss_pred             hhHhhhccCCCCeEEeeecc
Q 036414           81 VSKSLCELHKLECLKLANQG  100 (252)
Q Consensus        81 ~~~~l~~l~~L~~L~l~~~~  100 (252)
                      ....+..+.+|+.+.+....
T Consensus       660 ~l~el~~Le~L~~ls~~~~s  679 (889)
T KOG4658|consen  660 LLKELENLEHLENLSITISS  679 (889)
T ss_pred             hHHhhhcccchhhheeecch
Confidence            66677888888888886633

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]

Probab=98.72  E-value=1.6e-09  Score=85.92  Aligned_cols=128  Identities=21%  Similarity=0.238  Sum_probs=78.8

Q ss_pred             CCCcEecccCCCCC--chhhcCCCCCccEEEeeccCCccccchhHhhhccCCCCeEEeeeccchhHHHHhhc-cccCCCC
Q 036414           41 KNLIFISALHPSSC--TPDILSRLPTVQTLRISGDLSHYHSGVSKSLCELHKLECLKLANQGKMWQITRMIL-SEYKFPP  117 (252)
Q Consensus        41 ~~L~~L~~l~~~~~--~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~l~~-~~~~~~~  117 (252)
                      +.|++++ ++.|.+  +.+.+.-.+.++.|+++.|.   ... ...+..+++|+.|++++ +.+.+    +. |...+ -
T Consensus       284 q~LtelD-LS~N~I~~iDESvKL~Pkir~L~lS~N~---i~~-v~nLa~L~~L~~LDLS~-N~Ls~----~~Gwh~KL-G  352 (490)
T KOG1259|consen  284 QELTELD-LSGNLITQIDESVKLAPKLRRLILSQNR---IRT-VQNLAELPQLQLLDLSG-NLLAE----CVGWHLKL-G  352 (490)
T ss_pred             hhhhhcc-ccccchhhhhhhhhhccceeEEeccccc---eee-ehhhhhcccceEeeccc-chhHh----hhhhHhhh-c
Confidence            4466666 666655  44445556677777777664   222 22356667777777776 44443    33 44445 6


Q ss_pred             CCceEEeeecccCCCCchhhhcCCCCceEEeccCCccCceeeecCCCCCccccEEEecCCccccce
Q 036414          118 SLTQLSLSNTELIEDPMPTLEKLPHLEVLKLKQNSYFERKLACVGCSSFPQLKILHLKSMLWLEEW  183 (252)
Q Consensus       118 ~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~  183 (252)
                      |++.|.+..|.+.  ....++.+-+|..|++++|++....-.-. .+++|.|+.+.+.+|+ +..+
T Consensus       353 NIKtL~La~N~iE--~LSGL~KLYSLvnLDl~~N~Ie~ldeV~~-IG~LPCLE~l~L~~NP-l~~~  414 (490)
T KOG1259|consen  353 NIKTLKLAQNKIE--TLSGLRKLYSLVNLDLSSNQIEELDEVNH-IGNLPCLETLRLTGNP-LAGS  414 (490)
T ss_pred             CEeeeehhhhhHh--hhhhhHhhhhheeccccccchhhHHHhcc-cccccHHHHHhhcCCC-cccc
Confidence            6777777777664  45556666677777777777654333323 7788888888888888 6544

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=98.66  E-value=2.4e-08  Score=85.24  Aligned_cols=173  Identities=25%  Similarity=0.324  Sum_probs=132.6

Q ss_pred             ccCCCCCCcEecccCCCCC--chhhcCCCC-CccEEEeeccCCccccchhHhhhccCCCCeEEeeeccchhHHHHhhccc
Q 036414           36 YSSSLKNLIFISALHPSSC--TPDILSRLP-TVQTLRISGDLSHYHSGVSKSLCELHKLECLKLANQGKMWQITRMILSE  112 (252)
Q Consensus        36 ~l~~l~~L~~L~~l~~~~~--~~~~l~~l~-~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~l~~~~  112 (252)
                      .+..++.++.|+ +..+..  ++...+... +|+.|+++++   ....++..+..+++|+.|++.. +.+.+    +|..
T Consensus       111 ~~~~~~~l~~L~-l~~n~i~~i~~~~~~~~~nL~~L~l~~N---~i~~l~~~~~~l~~L~~L~l~~-N~l~~----l~~~  181 (394)
T COG4886         111 ELLELTNLTSLD-LDNNNITDIPPLIGLLKSNLKELDLSDN---KIESLPSPLRNLPNLKNLDLSF-NDLSD----LPKL  181 (394)
T ss_pred             hhhcccceeEEe-cCCcccccCccccccchhhccccccccc---chhhhhhhhhccccccccccCC-chhhh----hhhh
Confidence            355567788888 777666  666666664 9999999999   5677777889999999999999 77766    6743


Q ss_pred             c-CCCCCCceEEeeecccCCCCchhhhcCCCCceEEeccCCccCceeeecCCCCCccccEEEecCCccccceeccccccc
Q 036414          113 Y-KFPPSLTQLSLSNTELIEDPMPTLEKLPHLEVLKLKQNSYFERKLACVGCSSFPQLKILHLKSMLWLEEWTMGAGAMP  191 (252)
Q Consensus       113 ~-~~~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~l~  191 (252)
                      . .. ++|+.++++++++. ..+...+....|+++.++.|....  .... ...+.++..+.+.+++ +..++...+.++
T Consensus       182 ~~~~-~~L~~L~ls~N~i~-~l~~~~~~~~~L~~l~~~~N~~~~--~~~~-~~~~~~l~~l~l~~n~-~~~~~~~~~~l~  255 (394)
T COG4886         182 LSNL-SNLNNLDLSGNKIS-DLPPEIELLSALEELDLSNNSIIE--LLSS-LSNLKNLSGLELSNNK-LEDLPESIGNLS  255 (394)
T ss_pred             hhhh-hhhhheeccCCccc-cCchhhhhhhhhhhhhhcCCccee--cchh-hhhcccccccccCCce-eeeccchhcccc
Confidence            3 66 99999999999988 455544567779999998885433  2223 5678888888888888 666566678888


Q ss_pred             cccceeeccCCCCCCChHHHHhccccceeecccC
Q 036414          192 KLESLILNPCAYLRKLPEELWRIKSLCKLELHWP  225 (252)
Q Consensus       192 ~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~l~~~  225 (252)
                      +++.|++++|... .++. +..+.+++.+++++.
T Consensus       256 ~l~~L~~s~n~i~-~i~~-~~~~~~l~~L~~s~n  287 (394)
T COG4886         256 NLETLDLSNNQIS-SISS-LGSLTNLRELDLSGN  287 (394)
T ss_pred             ccceecccccccc-cccc-ccccCccCEEeccCc
Confidence            9999999998865 4544 777889999999874

>KOG4341 consensus F-box protein containing LRR [General function prediction only]

Probab=98.64  E-value=5.2e-09  Score=86.20  Aligned_cols=215  Identities=19%  Similarity=0.186  Sum_probs=138.6

Q ss_pred             hhccccEEEecCCCCCC--CCCcccCCCCCCcEecccCCCCC-----chhhcCCCCCccEEEeeccCCccccchhHhhhc
Q 036414           15 MMQKLMHLNFGSITLPA--PPKNYSSSLKNLIFISALHPSSC-----TPDILSRLPTVQTLRISGDLSHYHSGVSKSLCE   87 (252)
Q Consensus        15 ~l~~L~~L~l~~~~~~~--~~~~~l~~l~~L~~L~~l~~~~~-----~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~   87 (252)
                      .|++|++|+++++.-..  .+.....++..++.+. ...+..     +...-+.+.-+.++++..|....+..+...-+.
T Consensus       214 gC~kL~~lNlSwc~qi~~~gv~~~~rG~~~l~~~~-~kGC~e~~le~l~~~~~~~~~i~~lnl~~c~~lTD~~~~~i~~~  292 (483)
T KOG4341|consen  214 GCRKLKYLNLSWCPQISGNGVQALQRGCKELEKLS-LKGCLELELEALLKAAAYCLEILKLNLQHCNQLTDEDLWLIACG  292 (483)
T ss_pred             hhhhHHHhhhccCchhhcCcchHHhccchhhhhhh-hcccccccHHHHHHHhccChHhhccchhhhccccchHHHHHhhh
Confidence            46677777777655322  1223344555555554 333332     111223456677777766654455555666677


Q ss_pred             cCCCCeEEeeeccchhHHHHhhc--cccCCCCCCceEEeeecc-cCCCCchhh-hcCCCCceEEeccCCccCce-eeecC
Q 036414           88 LHKLECLKLANQGKMWQITRMIL--SEYKFPPSLTQLSLSNTE-LIEDPMPTL-EKLPHLEVLKLKQNSYFERK-LACVG  162 (252)
Q Consensus        88 l~~L~~L~l~~~~~~~~~~~l~~--~~~~~~~~L~~l~l~~~~-~~~~~~~~l-~~~~~L~~L~l~~~~~~~~~-~~~~~  162 (252)
                      +..|+.+..+++..+.+    .+  .++.-+++|+.+-+.+|+ +++.....+ .+++.|+.+++..+....+. +... 
T Consensus       293 c~~lq~l~~s~~t~~~d----~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sl-  367 (483)
T KOG4341|consen  293 CHALQVLCYSSCTDITD----EVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLASL-  367 (483)
T ss_pred             hhHhhhhcccCCCCCch----HHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhhHhhh-
Confidence            88899999988776644    33  445445899999999985 554445445 46889999999877654332 3333 


Q ss_pred             CCCCccccEEEecCCccccce-----eccccccccccceeeccCCCCC-CChHHHHhccccceeecccCCHHHHHHHHh
Q 036414          163 CSSFPQLKILHLKSMLWLEEW-----TMGAGAMPKLESLILNPCAYLR-KLPEELWRIKSLCKLELHWPQPELRQRLRA  235 (252)
Q Consensus       163 ~~~~~~L~~L~l~~~~~l~~~-----~~~~~~l~~L~~L~l~~~~~~~-~~p~~l~~l~~L~~L~l~~~~~~~~~~~~~  235 (252)
                      ..++|.|+.+.++.|..+++-     .....+...++.+.+++|+.+. ..-..+..+++|+.+++.+|..-..+.++.
T Consensus       368 s~~C~~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~~~q~vtk~~i~~  446 (483)
T KOG4341|consen  368 SRNCPRLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDATLEHLSICRNLERIELIDCQDVTKEAISR  446 (483)
T ss_pred             ccCCchhccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHHHHHHHhhCcccceeeeechhhhhhhhhHH
Confidence            678999999999988755532     2333566789999999998653 334467788999999999887544444444

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=98.42  E-value=2.5e-07  Score=56.98  Aligned_cols=59  Identities=34%  Similarity=0.454  Sum_probs=28.8

Q ss_pred             CCceEEeeecccCCCCchhhhcCCCCceEEeccCCccCceeeecCCCCCccccEEEecCCc
Q 036414          118 SLTQLSLSNTELIEDPMPTLEKLPHLEVLKLKQNSYFERKLACVGCSSFPQLKILHLKSML  178 (252)
Q Consensus       118 ~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~  178 (252)
                      +|++|++++|.+....+.++..+++|++|++++|.+..... .. +.++++|++|++++|+
T Consensus         2 ~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~-~~-f~~l~~L~~L~l~~N~   60 (61)
T PF13855_consen    2 NLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPP-DA-FSNLPNLRYLDLSNNN   60 (61)
T ss_dssp             TESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEET-TT-TTTSTTESEEEETSSS
T ss_pred             cCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCH-HH-HcCCCCCCEEeCcCCc
Confidence            45555555555554444455555555555555554433211 12 4455555555555544

...

>PLN03150 hypothetical protein; Provisional

Probab=98.40  E-value=5.3e-07  Score=81.22  Aligned_cols=105  Identities=19%  Similarity=0.218  Sum_probs=60.4

Q ss_pred             ccEEEeeccCCccccchhHhhhccCCCCeEEeeeccch-hHHHHhhc-cccCCCCCCceEEeeecccCCCCchhhhcCCC
Q 036414           65 VQTLRISGDLSHYHSGVSKSLCELHKLECLKLANQGKM-WQITRMIL-SEYKFPPSLTQLSLSNTELIEDPMPTLEKLPH  142 (252)
Q Consensus        65 L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~-~~~~~l~~-~~~~~~~~L~~l~l~~~~~~~~~~~~l~~~~~  142 (252)
                      ++.|+|+++.  ....+|..+..+++|+.|++++ +.+ +.    +| .+..+ ++|+.|++++|.+....|..++.+++
T Consensus       420 v~~L~L~~n~--L~g~ip~~i~~L~~L~~L~Ls~-N~l~g~----iP~~~~~l-~~L~~LdLs~N~lsg~iP~~l~~L~~  491 (623)
T PLN03150        420 IDGLGLDNQG--LRGFIPNDISKLRHLQSINLSG-NSIRGN----IPPSLGSI-TSLEVLDLSYNSFNGSIPESLGQLTS  491 (623)
T ss_pred             EEEEECCCCC--ccccCCHHHhCCCCCCEEECCC-CcccCc----CChHHhCC-CCCCEEECCCCCCCCCCchHHhcCCC
Confidence            5556666654  4455666666666666666666 333 34    55 55665 66666666666666666666666666


Q ss_pred             CceEEeccCCccCceeeecCCCCCccccEEEecCCc
Q 036414          143 LEVLKLKQNSYFERKLACVGCSSFPQLKILHLKSML  178 (252)
Q Consensus       143 L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~  178 (252)
                      |+.|++++|.+.+..+... .....++..+++.+|+
T Consensus       492 L~~L~Ls~N~l~g~iP~~l-~~~~~~~~~l~~~~N~  526 (623)
T PLN03150        492 LRILNLNGNSLSGRVPAAL-GGRLLHRASFNFTDNA  526 (623)
T ss_pred             CCEEECcCCcccccCChHH-hhccccCceEEecCCc
Confidence            6666666666554332211 1112345556666555

>PLN03150 hypothetical protein; Provisional

Probab=98.40  E-value=7.1e-07  Score=80.40  Aligned_cols=102  Identities=23%  Similarity=0.260  Sum_probs=82.3

Q ss_pred             CcEecccCCCCC---chhhcCCCCCccEEEeeccCCccccchhHhhhccCCCCeEEeeeccchhHHHHhhc-cccCCCCC
Q 036414           43 LIFISALHPSSC---TPDILSRLPTVQTLRISGDLSHYHSGVSKSLCELHKLECLKLANQGKMWQITRMIL-SEYKFPPS  118 (252)
Q Consensus        43 L~~L~~l~~~~~---~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~l~~-~~~~~~~~  118 (252)
                      ++.|+ ++.+..   .|..++.+++|+.|+|++|.  ....+|..+..+++|+.|++++|.-.+.    +| .+..+ ++
T Consensus       420 v~~L~-L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~--l~g~iP~~~~~l~~L~~LdLs~N~lsg~----iP~~l~~L-~~  491 (623)
T PLN03150        420 IDGLG-LDNQGLRGFIPNDISKLRHLQSINLSGNS--IRGNIPPSLGSITSLEVLDLSYNSFNGS----IPESLGQL-TS  491 (623)
T ss_pred             EEEEE-CCCCCccccCCHHHhCCCCCCEEECCCCc--ccCcCChHHhCCCCCCEEECCCCCCCCC----CchHHhcC-CC
Confidence            66777 777665   77789999999999999997  6678888899999999999998433355    77 78888 99


Q ss_pred             CceEEeeecccCCCCchhhhcC-CCCceEEeccCC
Q 036414          119 LTQLSLSNTELIEDPMPTLEKL-PHLEVLKLKQNS  152 (252)
Q Consensus       119 L~~l~l~~~~~~~~~~~~l~~~-~~L~~L~l~~~~  152 (252)
                      |+.|++++|.+....|..++.. .++..+++.+|.
T Consensus       492 L~~L~Ls~N~l~g~iP~~l~~~~~~~~~l~~~~N~  526 (623)
T PLN03150        492 LRILNLNGNSLSGRVPAALGGRLLHRASFNFTDNA  526 (623)
T ss_pred             CCEEECcCCcccccCChHHhhccccCceEEecCCc
Confidence            9999999999988888877653 467788887664

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=98.26  E-value=4.6e-07  Score=55.77  Aligned_cols=57  Identities=39%  Similarity=0.549  Sum_probs=35.6

Q ss_pred             CCCeEEeeeccchhHHHHhhc--cccCCCCCCceEEeeecccCCCCchhhhcCCCCceEEeccCC
Q 036414           90 KLECLKLANQGKMWQITRMIL--SEYKFPPSLTQLSLSNTELIEDPMPTLEKLPHLEVLKLKQNS  152 (252)
Q Consensus        90 ~L~~L~l~~~~~~~~~~~l~~--~~~~~~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~  152 (252)
                      +|++|++.+ +.+..    +|  .+..+ ++|++|++++|.+....+.++..+++|++|++++|.
T Consensus         2 ~L~~L~l~~-n~l~~----i~~~~f~~l-~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~   60 (61)
T PF13855_consen    2 NLESLDLSN-NKLTE----IPPDSFSNL-PNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNN   60 (61)
T ss_dssp             TESEEEETS-STESE----ECTTTTTTG-TTESEEEETSSSESEEETTTTTTSTTESEEEETSSS
T ss_pred             cCcEEECCC-CCCCc----cCHHHHcCC-CCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCc
Confidence            456666665 34444    44  44555 677777777776665555666777777777776654

...

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.17  E-value=3.4e-07  Score=72.80  Aligned_cols=85  Identities=15%  Similarity=0.200  Sum_probs=58.5

Q ss_pred             cCCCCceEEeccCCccCceeeecCCCCCccccEEEecCCcccccee--ccccccccccceeeccCCCCCCChH------H
Q 036414          139 KLPHLEVLKLKQNSYFERKLACVGCSSFPQLKILHLKSMLWLEEWT--MGAGAMPKLESLILNPCAYLRKLPE------E  210 (252)
Q Consensus       139 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~--~~~~~l~~L~~L~l~~~~~~~~~p~------~  210 (252)
                      .+|++..+.+..|.+....--.. +..+|.+..|.+..++ +.+|.  .....|++|..|++.+++..+.+-.      -
T Consensus       197 ~Fpnv~sv~v~e~PlK~~s~ek~-se~~p~~~~LnL~~~~-idswasvD~Ln~f~~l~dlRv~~~Pl~d~l~~~err~ll  274 (418)
T KOG2982|consen  197 IFPNVNSVFVCEGPLKTESSEKG-SEPFPSLSCLNLGANN-IDSWASVDALNGFPQLVDLRVSENPLSDPLRGGERRFLL  274 (418)
T ss_pred             hcccchheeeecCcccchhhccc-CCCCCcchhhhhcccc-cccHHHHHHHcCCchhheeeccCCcccccccCCcceEEE
Confidence            46788888887776654333322 5678888888888888 77762  3467789999999999887664432      2


Q ss_pred             HHhccccceeecccC
Q 036414          211 LWRIKSLCKLELHWP  225 (252)
Q Consensus       211 l~~l~~L~~L~l~~~  225 (252)
                      +..+++++.|+=+..
T Consensus       275 IaRL~~v~vLNGskI  289 (418)
T KOG2982|consen  275 IARLTKVQVLNGSKI  289 (418)
T ss_pred             EeeccceEEecCccc
Confidence            456777777765543

>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]

Probab=98.10  E-value=3e-07  Score=79.02  Aligned_cols=128  Identities=27%  Similarity=0.239  Sum_probs=84.1

Q ss_pred             hhccccEEEecCCCCCCCCCcccCCCCCCcEecccCCCCC-chhh-cCCCCCccEEEeeccCCccccchhHhhhccCCCC
Q 036414           15 MMQKLMHLNFGSITLPAPPKNYSSSLKNLIFISALHPSSC-TPDI-LSRLPTVQTLRISGDLSHYHSGVSKSLCELHKLE   92 (252)
Q Consensus        15 ~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~~l~~~~~-~~~~-l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~   92 (252)
                      .+..++.+++++|.+.. .-..+..+++|..|+ +..+.+ -... +..+++|++|++++|.   ...+. .+..++.|+
T Consensus        70 ~l~~l~~l~l~~n~i~~-~~~~l~~~~~l~~l~-l~~n~i~~i~~~l~~~~~L~~L~ls~N~---I~~i~-~l~~l~~L~  143 (414)
T KOG0531|consen   70 SLTSLKELNLRQNLIAK-ILNHLSKLKSLEALD-LYDNKIEKIENLLSSLVNLQVLDLSFNK---ITKLE-GLSTLTLLK  143 (414)
T ss_pred             HhHhHHhhccchhhhhh-hhcccccccceeeee-ccccchhhcccchhhhhcchheeccccc---ccccc-chhhccchh
Confidence            34555556666444332 333467777888888 777776 4444 6778888888888884   33332 345566688


Q ss_pred             eEEeeeccchhHHHHhhccccCCCCCCceEEeeecccCCCCc-hhhhcCCCCceEEeccCCccC
Q 036414           93 CLKLANQGKMWQITRMILSEYKFPPSLTQLSLSNTELIEDPM-PTLEKLPHLEVLKLKQNSYFE  155 (252)
Q Consensus        93 ~L~l~~~~~~~~~~~l~~~~~~~~~~L~~l~l~~~~~~~~~~-~~l~~~~~L~~L~l~~~~~~~  155 (252)
                      .|++.+ +.+..    +..+..+ .+|+.+++++|.+..... . +..+.+++.+.+.+|.+..
T Consensus       144 ~L~l~~-N~i~~----~~~~~~l-~~L~~l~l~~n~i~~ie~~~-~~~~~~l~~l~l~~n~i~~  200 (414)
T KOG0531|consen  144 ELNLSG-NLISD----ISGLESL-KSLKLLDLSYNRIVDIENDE-LSELISLEELDLGGNSIRE  200 (414)
T ss_pred             hheecc-Ccchh----ccCCccc-hhhhcccCCcchhhhhhhhh-hhhccchHHHhccCCchhc
Confidence            888888 66655    5555556 888888888887764333 2 4667778888887666543

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=98.08  E-value=1.2e-06  Score=79.12  Aligned_cols=133  Identities=19%  Similarity=0.242  Sum_probs=72.3

Q ss_pred             CCccEEEeeccCCccccchhHhhhc-cCCCCeEEeeeccch--hHHHHhhc-cccCCCCCCceEEeeecccCCCCchhhh
Q 036414           63 PTVQTLRISGDLSHYHSGVSKSLCE-LHKLECLKLANQGKM--WQITRMIL-SEYKFPPSLTQLSLSNTELIEDPMPTLE  138 (252)
Q Consensus        63 ~~L~~L~l~~~~~~~~~~~~~~l~~-l~~L~~L~l~~~~~~--~~~~~l~~-~~~~~~~~L~~l~l~~~~~~~~~~~~l~  138 (252)
                      .+|+.|++++.. ......+..++. +|+|+.|.+.+ ..+  .+    +. ...++ |+|..||+++++++.  ....+
T Consensus       122 ~nL~~LdI~G~~-~~s~~W~~kig~~LPsL~sL~i~~-~~~~~~d----F~~lc~sF-pNL~sLDIS~TnI~n--l~GIS  192 (699)
T KOG3665|consen  122 QNLQHLDISGSE-LFSNGWPKKIGTMLPSLRSLVISG-RQFDNDD----FSQLCASF-PNLRSLDISGTNISN--LSGIS  192 (699)
T ss_pred             HhhhhcCccccc-hhhccHHHHHhhhCcccceEEecC-ceecchh----HHHHhhcc-CccceeecCCCCccC--cHHHh
Confidence            567777776653 223334444433 47777777766 222  22    22 34455 777777777777662  35566


Q ss_pred             cCCCCceEEeccCCccCceeeecCCCCCccccEEEecCCccccce------eccccccccccceeeccCCCCC
Q 036414          139 KLPHLEVLKLKQNSYFERKLACVGCSSFPQLKILHLKSMLWLEEW------TMGAGAMPKLESLILNPCAYLR  205 (252)
Q Consensus       139 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~------~~~~~~l~~L~~L~l~~~~~~~  205 (252)
                      ++.+|+.|.+.+-.+..-..... .-++++|+.||+|.......-      -.-...+|.|+.|+.++....+
T Consensus       193 ~LknLq~L~mrnLe~e~~~~l~~-LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~  264 (699)
T KOG3665|consen  193 RLKNLQVLSMRNLEFESYQDLID-LFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDINE  264 (699)
T ss_pred             ccccHHHHhccCCCCCchhhHHH-HhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchhH
Confidence            77777777775444432111112 445777777777765532211      0112346677777777655443

>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]

Probab=98.05  E-value=1.9e-07  Score=82.27  Aligned_cols=108  Identities=25%  Similarity=0.261  Sum_probs=75.1

Q ss_pred             cccCCCCCCceEEeeecccCCCCchhhhcCCCCceEEeccCCccCceeeecCCCCCccccEEEecCCccccceecccccc
Q 036414          111 SEYKFPPSLTQLSLSNTELIEDPMPTLEKLPHLEVLKLKQNSYFERKLACVGCSSFPQLKILHLKSMLWLEEWTMGAGAM  190 (252)
Q Consensus       111 ~~~~~~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~l  190 (252)
                      .+.-+ +.++.|+++.|++...  ..+..+++|++|+++.|+.....- +. ..++. |+.|.+++|. ++++.. +.++
T Consensus       182 SLqll-~ale~LnLshNk~~~v--~~Lr~l~~LkhLDlsyN~L~~vp~-l~-~~gc~-L~~L~lrnN~-l~tL~g-ie~L  253 (1096)
T KOG1859|consen  182 SLQLL-PALESLNLSHNKFTKV--DNLRRLPKLKHLDLSYNCLRHVPQ-LS-MVGCK-LQLLNLRNNA-LTTLRG-IENL  253 (1096)
T ss_pred             HHHHH-HHhhhhccchhhhhhh--HHHHhcccccccccccchhccccc-cc-hhhhh-heeeeecccH-HHhhhh-HHhh
Confidence            33334 7788889988888743  377888999999998887654211 12 33444 8888888888 777654 5678


Q ss_pred             ccccceeeccCCCCCCC-hHHHHhccccceeecccCC
Q 036414          191 PKLESLILNPCAYLRKL-PEELWRIKSLCKLELHWPQ  226 (252)
Q Consensus       191 ~~L~~L~l~~~~~~~~~-p~~l~~l~~L~~L~l~~~~  226 (252)
                      .+|+.|+++.|-+.+.- -.-++.+..|++|.+.|+|
T Consensus       254 ksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNP  290 (1096)
T KOG1859|consen  254 KSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNP  290 (1096)
T ss_pred             hhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCc
Confidence            88999999887544311 1235667888888888876

>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]

Probab=98.01  E-value=5.9e-07  Score=77.21  Aligned_cols=113  Identities=26%  Similarity=0.294  Sum_probs=66.5

Q ss_pred             ccccchHHHhhccccEEEecCCCCCCCCCcccCCCCCCcEecccCCCCC-chhhcCCCCCccEEEeeccCCccccchhHh
Q 036414            6 IDHSSEDIWMMQKLMHLNFGSITLPAPPKNYSSSLKNLIFISALHPSSC-TPDILSRLPTVQTLRISGDLSHYHSGVSKS   84 (252)
Q Consensus         6 l~~lp~~i~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~~l~~~~~-~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~   84 (252)
                      |+.+-..+..+.+|+.|++..|.+. .+...+..+++|++|+ ++.+.+ ....+..++.|+.|++++|.   ...+. .
T Consensus        84 i~~~~~~l~~~~~l~~l~l~~n~i~-~i~~~l~~~~~L~~L~-ls~N~I~~i~~l~~l~~L~~L~l~~N~---i~~~~-~  157 (414)
T KOG0531|consen   84 IAKILNHLSKLKSLEALDLYDNKIE-KIENLLSSLVNLQVLD-LSFNKITKLEGLSTLTLLKELNLSGNL---ISDIS-G  157 (414)
T ss_pred             hhhhhcccccccceeeeeccccchh-hcccchhhhhcchhee-ccccccccccchhhccchhhheeccCc---chhcc-C
Confidence            3333333566677777777744433 3333366777777777 777776 55566667777777777774   22222 2


Q ss_pred             hhccCCCCeEEeeeccchhHHHHhhcc--ccCCCCCCceEEeeecccC
Q 036414           85 LCELHKLECLKLANQGKMWQITRMILS--EYKFPPSLTQLSLSNTELI  130 (252)
Q Consensus        85 l~~l~~L~~L~l~~~~~~~~~~~l~~~--~~~~~~~L~~l~l~~~~~~  130 (252)
                      +..+++|+.+++.+ +.+..    +..  ...+ .+++.+.+.++.+.
T Consensus       158 ~~~l~~L~~l~l~~-n~i~~----ie~~~~~~~-~~l~~l~l~~n~i~  199 (414)
T KOG0531|consen  158 LESLKSLKLLDLSY-NRIVD----IENDELSEL-ISLEELDLGGNSIR  199 (414)
T ss_pred             CccchhhhcccCCc-chhhh----hhhhhhhhc-cchHHHhccCCchh
Confidence            33366777777776 44433    332  3444 66666666666554

>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]

Probab=97.94  E-value=1.8e-05  Score=59.60  Aligned_cols=61  Identities=30%  Similarity=0.234  Sum_probs=25.4

Q ss_pred             CCCceEEeeecccCCCCchhhhcCCCCceEEeccCCccCceeeecCCCCCccccEEEecCCc
Q 036414          117 PSLTQLSLSNTELIEDPMPTLEKLPHLEVLKLKQNSYFERKLACVGCSSFPQLKILHLKSML  178 (252)
Q Consensus       117 ~~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~  178 (252)
                      +.|..|.+.+|+++...|..-..+++|..|.+.+|++........ ...+|.|++|.+-+|+
T Consensus        64 ~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~p-La~~p~L~~Ltll~Np  124 (233)
T KOG1644|consen   64 PRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDP-LASCPKLEYLTLLGNP  124 (233)
T ss_pred             cccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcch-hccCCccceeeecCCc
Confidence            444444444444444444333334444444444444322111111 3344444444444444

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=97.90  E-value=5.2e-06  Score=75.19  Aligned_cols=138  Identities=17%  Similarity=0.181  Sum_probs=90.9

Q ss_pred             CCCCeEEeeeccch-hHHHHhhc-cccCCCCCCceEEeeecccCCC-CchhhhcCCCCceEEeccCCccCceeeecCCCC
Q 036414           89 HKLECLKLANQGKM-WQITRMIL-SEYKFPPSLTQLSLSNTELIED-PMPTLEKLPHLEVLKLKQNSYFERKLACVGCSS  165 (252)
Q Consensus        89 ~~L~~L~l~~~~~~-~~~~~l~~-~~~~~~~~L~~l~l~~~~~~~~-~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~  165 (252)
                      .+|++|++.+...+ .+    -| .++.+.|+|+.|.+.+-.+... ......++|+|..|++++.++...    .|.+.
T Consensus       122 ~nL~~LdI~G~~~~s~~----W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl----~GIS~  193 (699)
T KOG3665|consen  122 QNLQHLDISGSELFSNG----WPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL----SGISR  193 (699)
T ss_pred             HhhhhcCccccchhhcc----HHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc----HHHhc
Confidence            68899999884433 11    23 4555569999999888665433 334457889999999988877542    34778


Q ss_pred             CccccEEEecCCccccce--eccccccccccceeeccCCCCCC--ChH----HHHhccccceeecccC--CHHHHHHHHh
Q 036414          166 FPQLKILHLKSMLWLEEW--TMGAGAMPKLESLILNPCAYLRK--LPE----ELWRIKSLCKLELHWP--QPELRQRLRA  235 (252)
Q Consensus       166 ~~~L~~L~l~~~~~l~~~--~~~~~~l~~L~~L~l~~~~~~~~--~p~----~l~~l~~L~~L~l~~~--~~~~~~~~~~  235 (252)
                      +++|+.|.+.+-. +...  -..+-.+++|+.||++.-.....  +..    .-..+|+|+.||.++-  .+++.+.+..
T Consensus       194 LknLq~L~mrnLe-~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~~~le~ll~  272 (699)
T KOG3665|consen  194 LKNLQVLSMRNLE-FESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDINEEILEELLN  272 (699)
T ss_pred             cccHHHHhccCCC-CCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchhHHHHHHHHH
Confidence            8889988887766 4432  12345688999999988654332  121    1234788888888853  4566655544

>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]

Probab=97.82  E-value=1.2e-05  Score=63.45  Aligned_cols=162  Identities=21%  Similarity=0.280  Sum_probs=87.4

Q ss_pred             HHHhhccccEEEecCCCCCCCC----CcccCCCCCCcEecccCCC---CC----------chhhcCCCCCccEEEeeccC
Q 036414           12 DIWMMQKLMHLNFGSITLPAPP----KNYSSSLKNLIFISALHPS---SC----------TPDILSRLPTVQTLRISGDL   74 (252)
Q Consensus        12 ~i~~l~~L~~L~l~~~~~~~~~----~~~l~~l~~L~~L~~l~~~---~~----------~~~~l~~l~~L~~L~l~~~~   74 (252)
                      .+..+..++.+++++|++....    ...+.+-.+|+... ++.-   ..          +.+.+-+|+.|++.+|+.|.
T Consensus        25 el~~~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvn-fsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNA  103 (388)
T COG5238          25 ELEMMDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVN-FSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNA  103 (388)
T ss_pred             HHHhhcceeEEeccCCcccHHHHHHHHHHHhhhcceeEee-hhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccc
Confidence            3456778899999999987643    33344445566554 2210   00          33446678999999999887


Q ss_pred             CccccchhHh----hhccCCCCeEEeeeccchhHH--HH----h--h---ccccCCCCCCceEEeeecccCCCCchh---
Q 036414           75 SHYHSGVSKS----LCELHKLECLKLANQGKMWQI--TR----M--I---LSEYKFPPSLTQLSLSNTELIEDPMPT---  136 (252)
Q Consensus        75 ~~~~~~~~~~----l~~l~~L~~L~l~~~~~~~~~--~~----l--~---~~~~~~~~~L~~l~l~~~~~~~~~~~~---  136 (252)
                        +....|+.    +.+-+.|.+|.+.+ +.++.+  .+    |  +   ...++. |.|+.+....|++.......   
T Consensus       104 --fg~~~~e~L~d~is~~t~l~HL~l~N-nGlGp~aG~rigkal~~la~nKKaa~k-p~Le~vicgrNRlengs~~~~a~  179 (388)
T COG5238         104 --FGSEFPEELGDLISSSTDLVHLKLNN-NGLGPIAGGRIGKALFHLAYNKKAADK-PKLEVVICGRNRLENGSKELSAA  179 (388)
T ss_pred             --cCcccchHHHHHHhcCCCceeEEeec-CCCCccchhHHHHHHHHHHHHhhhccC-CCceEEEeccchhccCcHHHHHH
Confidence              55555543    45567899999988 433110  00    0  0   022334 66666666666554322211   


Q ss_pred             -hhcCCCCceEEeccCCccCc---eeeecCCCCCccccEEEecCCc
Q 036414          137 -LEKLPHLEVLKLKQNSYFER---KLACVGCSSFPQLKILHLKSML  178 (252)
Q Consensus       137 -l~~~~~L~~L~l~~~~~~~~---~~~~~~~~~~~~L~~L~l~~~~  178 (252)
                       +..-.+|+++.+.+|.+...   ...+.|...+.+|+.|++.+|-
T Consensus       180 ~l~sh~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNt  225 (388)
T COG5238         180 LLESHENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNT  225 (388)
T ss_pred             HHHhhcCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccc
Confidence             12224566666655554322   1112223345556666655554

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=97.80  E-value=2.2e-05  Score=44.64  Aligned_cols=37  Identities=22%  Similarity=0.271  Sum_probs=23.5

Q ss_pred             ccccEEEecCCccccceeccccccccccceeeccCCCC
Q 036414          167 PQLKILHLKSMLWLEEWTMGAGAMPKLESLILNPCAYL  204 (252)
Q Consensus       167 ~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~~~~~  204 (252)
                      ++|++|++++|+ +++++..++.+++|+.|++++|+..
T Consensus         1 ~~L~~L~l~~N~-i~~l~~~l~~l~~L~~L~l~~N~i~   37 (44)
T PF12799_consen    1 KNLEELDLSNNQ-ITDLPPELSNLPNLETLNLSNNPIS   37 (44)
T ss_dssp             TT-SEEEETSSS--SSHGGHGTTCTTSSEEEETSSCCS
T ss_pred             CcceEEEccCCC-CcccCchHhCCCCCCEEEecCCCCC
Confidence            456777777776 6666665667777777777776543

...

>PRK15386 type III secretion protein GogB; Provisional

Probab=97.77  E-value=0.00022  Score=60.36  Aligned_cols=135  Identities=18%  Similarity=0.130  Sum_probs=70.4

Q ss_pred             HHhhccccEEEecCCCCCCCCCcccCCCC-CCcEecccCCCCC---chhhcCCCCCccEEEeeccCCccccchhHhhhcc
Q 036414           13 IWMMQKLMHLNFGSITLPAPPKNYSSSLK-NLIFISALHPSSC---TPDILSRLPTVQTLRISGDLSHYHSGVSKSLCEL   88 (252)
Q Consensus        13 i~~l~~L~~L~l~~~~~~~~~~~~l~~l~-~L~~L~~l~~~~~---~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l   88 (252)
                      +..+.++++|++++|. ...+|    .++ +|++|. +..+..   .|..+  .++|++|++++|.  ....+|.     
T Consensus        48 ~~~~~~l~~L~Is~c~-L~sLP----~LP~sLtsL~-Lsnc~nLtsLP~~L--P~nLe~L~Ls~Cs--~L~sLP~-----  112 (426)
T PRK15386         48 IEEARASGRLYIKDCD-IESLP----VLPNELTEIT-IENCNNLTTLPGSI--PEGLEKLTVCHCP--EISGLPE-----  112 (426)
T ss_pred             HHHhcCCCEEEeCCCC-CcccC----CCCCCCcEEE-ccCCCCcccCCchh--hhhhhheEccCcc--ccccccc-----
Confidence            4557888899998663 33445    233 588888 665443   34333  2578888888874  3334443     


Q ss_pred             CCCCeEEeeeccchhHHHHhhccccCCCCCCceEEeeecccC-CCCchhhhcCCCCceEEeccCCccCceeeecCCCCCc
Q 036414           89 HKLECLKLANQGKMWQITRMILSEYKFPPSLTQLSLSNTELI-EDPMPTLEKLPHLEVLKLKQNSYFERKLACVGCSSFP  167 (252)
Q Consensus        89 ~~L~~L~l~~~~~~~~~~~l~~~~~~~~~~L~~l~l~~~~~~-~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~  167 (252)
                       +|+.|++.. +..       ..+..+|++|+.|.+.+++.. ...... .--++|+.|.+++|....  .+   ..-..
T Consensus       113 -sLe~L~L~~-n~~-------~~L~~LPssLk~L~I~~~n~~~~~~lp~-~LPsSLk~L~Is~c~~i~--LP---~~LP~  177 (426)
T PRK15386        113 -SVRSLEIKG-SAT-------DSIKNVPNGLTSLSINSYNPENQARIDN-LISPSLKTLSLTGCSNII--LP---EKLPE  177 (426)
T ss_pred             -ccceEEeCC-CCC-------cccccCcchHhheecccccccccccccc-ccCCcccEEEecCCCccc--Cc---ccccc
Confidence             466666654 221       133445566676666432211 000000 012467777776655322  11   11123


Q ss_pred             cccEEEecCC
Q 036414          168 QLKILHLKSM  177 (252)
Q Consensus       168 ~L~~L~l~~~  177 (252)
                      +|+.|.++.+
T Consensus       178 SLk~L~ls~n  187 (426)
T PRK15386        178 SLQSITLHIE  187 (426)
T ss_pred             cCcEEEeccc
Confidence            6777776654

>KOG4341 consensus F-box protein containing LRR [General function prediction only]

Probab=97.76  E-value=1.9e-06  Score=71.42  Aligned_cols=106  Identities=20%  Similarity=0.118  Sum_probs=55.6

Q ss_pred             CCcEecccCCCCC-----chhhcCCCCCccEEEeeccCCccccchhHhhhccCCCCeEEeeeccchhHHHHhhccccCCC
Q 036414           42 NLIFISALHPSSC-----TPDILSRLPTVQTLRISGDLSHYHSGVSKSLCELHKLECLKLANQGKMWQITRMILSEYKFP  116 (252)
Q Consensus        42 ~L~~L~~l~~~~~-----~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~l~~~~~~~~  116 (252)
                      .|+.|. ++.+.-     .-.....++++++|.+.+|.......+...-..+++|+++++..|..+...  .+..++.-+
T Consensus       139 ~lk~LS-lrG~r~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~--~Lk~la~gC  215 (483)
T KOG4341|consen  139 FLKELS-LRGCRAVGDSSLRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDV--SLKYLAEGC  215 (483)
T ss_pred             cccccc-ccccccCCcchhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHH--HHHHHHHhh
Confidence            456666 555443     112234577788887777753333444444456777888887775554320  011233334


Q ss_pred             CCCceEEeeec-ccCCCCchh-hhcCCCCceEEecc
Q 036414          117 PSLTQLSLSNT-ELIEDPMPT-LEKLPHLEVLKLKQ  150 (252)
Q Consensus       117 ~~L~~l~l~~~-~~~~~~~~~-l~~~~~L~~L~l~~  150 (252)
                      ++|+++++++| ++.+..... ...+.+++++...+
T Consensus       216 ~kL~~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kG  251 (483)
T KOG4341|consen  216 RKLKYLNLSWCPQISGNGVQALQRGCKELEKLSLKG  251 (483)
T ss_pred             hhHHHhhhccCchhhcCcchHHhccchhhhhhhhcc
Confidence            77788877776 333322222 23344455554443

>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]

Probab=97.75  E-value=7.1e-07  Score=78.80  Aligned_cols=125  Identities=25%  Similarity=0.232  Sum_probs=74.4

Q ss_pred             ccEEEeeccCCccccchhHhhhccCCCCeEEeeeccchhHHHHhhccccCCCCCCceEEeeecccCCCCchhhhcCCCCc
Q 036414           65 VQTLRISGDLSHYHSGVSKSLCELHKLECLKLANQGKMWQITRMILSEYKFPPSLTQLSLSNTELIEDPMPTLEKLPHLE  144 (252)
Q Consensus        65 L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~l~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~~~~L~  144 (252)
                      |...+.++|   ....+-.++.-++.+++|++++ |.+..    ...+..+ +.|+.|||+.|.+...+--....| +|.
T Consensus       166 L~~a~fsyN---~L~~mD~SLqll~ale~LnLsh-Nk~~~----v~~Lr~l-~~LkhLDlsyN~L~~vp~l~~~gc-~L~  235 (1096)
T KOG1859|consen  166 LATASFSYN---RLVLMDESLQLLPALESLNLSH-NKFTK----VDNLRRL-PKLKHLDLSYNCLRHVPQLSMVGC-KLQ  235 (1096)
T ss_pred             Hhhhhcchh---hHHhHHHHHHHHHHhhhhccch-hhhhh----hHHHHhc-ccccccccccchhccccccchhhh-hhe
Confidence            444444444   2333344555567788888887 55543    3345555 788888888887762221112222 388


Q ss_pred             eEEeccCCccCceeeecCCCCCccccEEEecCCcccccee--ccccccccccceeeccCCCC
Q 036414          145 VLKLKQNSYFERKLACVGCSSFPQLKILHLKSMLWLEEWT--MGAGAMPKLESLILNPCAYL  204 (252)
Q Consensus       145 ~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~--~~~~~l~~L~~L~l~~~~~~  204 (252)
                      .|++++|..+.-    -|..++.+|+.||+++|- +.+..  .....+..|..|.+.||+..
T Consensus       236 ~L~lrnN~l~tL----~gie~LksL~~LDlsyNl-l~~hseL~pLwsLs~L~~L~LeGNPl~  292 (1096)
T KOG1859|consen  236 LLNLRNNALTTL----RGIENLKSLYGLDLSYNL-LSEHSELEPLWSLSSLIVLWLEGNPLC  292 (1096)
T ss_pred             eeeecccHHHhh----hhHHhhhhhhccchhHhh-hhcchhhhHHHHHHHHHHHhhcCCccc
Confidence            888877665431    124577888888888877 55331  11456677888888888753

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.69  E-value=2.6e-05  Score=62.29  Aligned_cols=82  Identities=20%  Similarity=0.155  Sum_probs=53.0

Q ss_pred             CCCCceEEeeecccC-CCCchhhhcCCCCceEEeccCCccCceeeecCCCCCccccEEEecCCccccceec------ccc
Q 036414          116 PPSLTQLSLSNTELI-EDPMPTLEKLPHLEVLKLKQNSYFERKLACVGCSSFPQLKILHLKSMLWLEEWTM------GAG  188 (252)
Q Consensus       116 ~~~L~~l~l~~~~~~-~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~------~~~  188 (252)
                      .+++..+.+..|.+. ...-..+...|.+-.|+++.+.+....-... ..+||.|..|.+..++-++.+..      .++
T Consensus       198 Fpnv~sv~v~e~PlK~~s~ek~se~~p~~~~LnL~~~~idswasvD~-Ln~f~~l~dlRv~~~Pl~d~l~~~err~llIa  276 (418)
T KOG2982|consen  198 FPNVNSVFVCEGPLKTESSEKGSEPFPSLSCLNLGANNIDSWASVDA-LNGFPQLVDLRVSENPLSDPLRGGERRFLLIA  276 (418)
T ss_pred             cccchheeeecCcccchhhcccCCCCCcchhhhhcccccccHHHHHH-HcCCchhheeeccCCcccccccCCcceEEEEe
Confidence            388888888777654 2333445567777788888777654222234 67899999999998884333322      235


Q ss_pred             ccccccceee
Q 036414          189 AMPKLESLIL  198 (252)
Q Consensus       189 ~l~~L~~L~l  198 (252)
                      .+++++.|.=
T Consensus       277 RL~~v~vLNG  286 (418)
T KOG2982|consen  277 RLTKVQVLNG  286 (418)
T ss_pred             eccceEEecC
Confidence            5667776653

>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]

Probab=97.63  E-value=5.8e-05  Score=57.00  Aligned_cols=107  Identities=24%  Similarity=0.279  Sum_probs=80.9

Q ss_pred             CCCceEEeeecccCCCCchhhhcCCCCceEEeccCCccCceeeecCCCCCccccEEEecCCcccccee--cccccccccc
Q 036414          117 PSLTQLSLSNTELIEDPMPTLEKLPHLEVLKLKQNSYFERKLACVGCSSFPQLKILHLKSMLWLEEWT--MGAGAMPKLE  194 (252)
Q Consensus       117 ~~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~--~~~~~l~~L~  194 (252)
                      .+...+|+++|.+.  ....+..++.|.+|.+..|+++......  ..-+|+|+.|.+.+|. +.++.  .....||+|+
T Consensus        42 d~~d~iDLtdNdl~--~l~~lp~l~rL~tLll~nNrIt~I~p~L--~~~~p~l~~L~LtnNs-i~~l~dl~pLa~~p~L~  116 (233)
T KOG1644|consen   42 DQFDAIDLTDNDLR--KLDNLPHLPRLHTLLLNNNRITRIDPDL--DTFLPNLKTLILTNNS-IQELGDLDPLASCPKLE  116 (233)
T ss_pred             cccceecccccchh--hcccCCCccccceEEecCCcceeeccch--hhhccccceEEecCcc-hhhhhhcchhccCCccc
Confidence            46678888888765  3344567889999999989887755443  4568899999999988 66552  2367899999


Q ss_pred             ceeeccCCCCCC---ChHHHHhccccceeecccCCHH
Q 036414          195 SLILNPCAYLRK---LPEELWRIKSLCKLELHWPQPE  228 (252)
Q Consensus       195 ~L~l~~~~~~~~---~p~~l~~l~~L~~L~l~~~~~~  228 (252)
                      .|.+-+|+....   --..+..+|+|+.||+.++..+
T Consensus       117 ~Ltll~Npv~~k~~YR~yvl~klp~l~~LDF~kVt~~  153 (233)
T KOG1644|consen  117 YLTLLGNPVEHKKNYRLYVLYKLPSLRTLDFQKVTRK  153 (233)
T ss_pred             eeeecCCchhcccCceeEEEEecCcceEeehhhhhHH
Confidence            999999986542   2224678899999999988743

>PRK15386 type III secretion protein GogB; Provisional

Probab=97.60  E-value=0.00019  Score=60.69  Aligned_cols=137  Identities=15%  Similarity=0.127  Sum_probs=75.3

Q ss_pred             cCCCCCCcEecccCCCCC--chhhcCCCCCccEEEeeccCCccccchhHhhhccCCCCeEEeeeccchhHHHHhhccccC
Q 036414           37 SSSLKNLIFISALHPSSC--TPDILSRLPTVQTLRISGDLSHYHSGVSKSLCELHKLECLKLANQGKMWQITRMILSEYK  114 (252)
Q Consensus        37 l~~l~~L~~L~~l~~~~~--~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~l~~~~~~  114 (252)
                      +..+.++++|+ ++.+.+  +| .+  -++|++|.+++|.  ....+|..+  ..+|+.|++.+|..+.          .
T Consensus        48 ~~~~~~l~~L~-Is~c~L~sLP-~L--P~sLtsL~Lsnc~--nLtsLP~~L--P~nLe~L~Ls~Cs~L~----------s  109 (426)
T PRK15386         48 IEEARASGRLY-IKDCDIESLP-VL--PNELTEITIENCN--NLTTLPGSI--PEGLEKLTVCHCPEIS----------G  109 (426)
T ss_pred             HHHhcCCCEEE-eCCCCCcccC-CC--CCCCcEEEccCCC--CcccCCchh--hhhhhheEccCccccc----------c
Confidence            34557777777 776654  33 21  2358888887775  445555443  2467788887743332          2


Q ss_pred             CCCCCceEEeeecccCCCCchhhhcC-CCCceEEeccCCccCceeeecCCCCC-ccccEEEecCCccccceecccccccc
Q 036414          115 FPPSLTQLSLSNTELIEDPMPTLEKL-PHLEVLKLKQNSYFERKLACVGCSSF-PQLKILHLKSMLWLEEWTMGAGAMPK  192 (252)
Q Consensus       115 ~~~~L~~l~l~~~~~~~~~~~~l~~~-~~L~~L~l~~~~~~~~~~~~~~~~~~-~~L~~L~l~~~~~l~~~~~~~~~l~~  192 (252)
                      +|++|+.|++..+....     +..+ ++|+.|.+..+..... .. . ...+ ++|++|.+++|.. ...|..+  -.+
T Consensus       110 LP~sLe~L~L~~n~~~~-----L~~LPssLk~L~I~~~n~~~~-~~-l-p~~LPsSLk~L~Is~c~~-i~LP~~L--P~S  178 (426)
T PRK15386        110 LPESVRSLEIKGSATDS-----IKNVPNGLTSLSINSYNPENQ-AR-I-DNLISPSLKTLSLTGCSN-IILPEKL--PES  178 (426)
T ss_pred             cccccceEEeCCCCCcc-----cccCcchHhheeccccccccc-cc-c-ccccCCcccEEEecCCCc-ccCcccc--ccc
Confidence            34677777776543321     1222 3567777743321110 11 0 1123 4799999988883 3333222  247


Q ss_pred             ccceeeccCC
Q 036414          193 LESLILNPCA  202 (252)
Q Consensus       193 L~~L~l~~~~  202 (252)
                      |+.|.++.+.
T Consensus       179 Lk~L~ls~n~  188 (426)
T PRK15386        179 LQSITLHIEQ  188 (426)
T ss_pred             CcEEEecccc
Confidence            8888887654

>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]

Probab=97.46  E-value=8.6e-06  Score=57.71  Aligned_cols=85  Identities=21%  Similarity=0.214  Sum_probs=42.9

Q ss_pred             hhccCCCCeEEeeeccchhHHHHhhc-cccCCCCCCceEEeeecccCCCCchhhhcCCCCceEEeccCCccCceeeecCC
Q 036414           85 LCELHKLECLKLANQGKMWQITRMIL-SEYKFPPSLTQLSLSNTELIEDPMPTLEKLPHLEVLKLKQNSYFERKLACVGC  163 (252)
Q Consensus        85 l~~l~~L~~L~l~~~~~~~~~~~l~~-~~~~~~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~  163 (252)
                      +.+...|...++++ +.+..    +| .+...++..+.+++..|.+. ..|..+..++.|+.++++.|.+....-.+   
T Consensus        49 l~~~~el~~i~ls~-N~fk~----fp~kft~kf~t~t~lNl~~neis-dvPeE~Aam~aLr~lNl~~N~l~~~p~vi---  119 (177)
T KOG4579|consen   49 LSKGYELTKISLSD-NGFKK----FPKKFTIKFPTATTLNLANNEIS-DVPEELAAMPALRSLNLRFNPLNAEPRVI---  119 (177)
T ss_pred             HhCCceEEEEeccc-chhhh----CCHHHhhccchhhhhhcchhhhh-hchHHHhhhHHhhhcccccCccccchHHH---
Confidence            33444455555655 44444    44 33222256666666666665 34444666666666666666554322221   


Q ss_pred             CCCccccEEEecCCc
Q 036414          164 SSFPQLKILHLKSML  178 (252)
Q Consensus       164 ~~~~~L~~L~l~~~~  178 (252)
                      ..+.++-.|+..++.
T Consensus       120 ~~L~~l~~Lds~~na  134 (177)
T KOG4579|consen  120 APLIKLDMLDSPENA  134 (177)
T ss_pred             HHHHhHHHhcCCCCc
Confidence            124444455544444

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=97.42  E-value=0.00023  Score=40.41  Aligned_cols=35  Identities=43%  Similarity=0.680  Sum_probs=15.8

Q ss_pred             CCceEEeeecccCCCCchhhhcCCCCceEEeccCCc
Q 036414          118 SLTQLSLSNTELIEDPMPTLEKLPHLEVLKLKQNSY  153 (252)
Q Consensus       118 ~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~  153 (252)
                      +|++|++++|+++ ..+..++.+++|+.|++++|.+
T Consensus         2 ~L~~L~l~~N~i~-~l~~~l~~l~~L~~L~l~~N~i   36 (44)
T PF12799_consen    2 NLEELDLSNNQIT-DLPPELSNLPNLETLNLSNNPI   36 (44)
T ss_dssp             T-SEEEETSSS-S-SHGGHGTTCTTSSEEEETSSCC
T ss_pred             cceEEEccCCCCc-ccCchHhCCCCCCEEEecCCCC
Confidence            4455555555554 2233344555555555554444

...

>KOG2123 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.39  E-value=1.7e-05  Score=62.81  Aligned_cols=112  Identities=25%  Similarity=0.229  Sum_probs=80.0

Q ss_pred             CCCceEEeeecccCCCCchhhhcCCCCceEEeccCCccCceeeecCCCCCccccEEEecCCcccccee--cccccccccc
Q 036414          117 PSLTQLSLSNTELIEDPMPTLEKLPHLEVLKLKQNSYFERKLACVGCSSFPQLKILHLKSMLWLEEWT--MGAGAMPKLE  194 (252)
Q Consensus       117 ~~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~--~~~~~l~~L~  194 (252)
                      .+.++|+.-+|.++  .......++.|+.|.|+-|.++...   . +..|++|++|.|..|. +.++.  .-+.++|+|+
T Consensus        19 ~~vkKLNcwg~~L~--DIsic~kMp~lEVLsLSvNkIssL~---p-l~rCtrLkElYLRkN~-I~sldEL~YLknlpsLr   91 (388)
T KOG2123|consen   19 ENVKKLNCWGCGLD--DISICEKMPLLEVLSLSVNKISSLA---P-LQRCTRLKELYLRKNC-IESLDELEYLKNLPSLR   91 (388)
T ss_pred             HHhhhhcccCCCcc--HHHHHHhcccceeEEeeccccccch---h-HHHHHHHHHHHHHhcc-cccHHHHHHHhcCchhh
Confidence            56677777777775  4455567888888888888775522   2 4578888888888877 66542  2357789999


Q ss_pred             ceeeccCCCCCCChH-----HHHhccccceeecccCCH-HHHHHHHh
Q 036414          195 SLILNPCAYLRKLPE-----ELWRIKSLCKLELHWPQP-ELRQRLRA  235 (252)
Q Consensus       195 ~L~l~~~~~~~~~p~-----~l~~l~~L~~L~l~~~~~-~~~~~~~~  235 (252)
                      .|.+..|++.+.-+.     .++.+|+|+.|+=....+ +..+.++.
T Consensus        92 ~LWL~ENPCc~~ag~nYR~~VLR~LPnLkKLDnv~VteeEle~ALr~  138 (388)
T KOG2123|consen   92 TLWLDENPCCGEAGQNYRRKVLRVLPNLKKLDNVPVTEEELEEALRD  138 (388)
T ss_pred             hHhhccCCcccccchhHHHHHHHHcccchhccCccccHHHHHHHHhc
Confidence            999999887664432     578899999998776664 55555666

>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]

Probab=97.33  E-value=0.00013  Score=57.77  Aligned_cols=41  Identities=12%  Similarity=0.182  Sum_probs=18.3

Q ss_pred             HHhhccccEEEecCCCCCCCCCcc----cCCCCCCcEecccCCCCC
Q 036414           13 IWMMQKLMHLNFGSITLPAPPKNY----SSSLKNLIFISALHPSSC   54 (252)
Q Consensus        13 i~~l~~L~~L~l~~~~~~~~~~~~----l~~l~~L~~L~~l~~~~~   54 (252)
                      +-+|++|+..+++.|.+....|..    +.+-+.|.+|. +++|..
T Consensus        88 Llkcp~l~~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~-l~NnGl  132 (388)
T COG5238          88 LLKCPRLQKVDLSDNAFGSEFPEELGDLISSSTDLVHLK-LNNNGL  132 (388)
T ss_pred             HhcCCcceeeeccccccCcccchHHHHHHhcCCCceeEE-eecCCC
Confidence            344555555555555444433322    23334455554 444443

>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]

Probab=97.27  E-value=5.4e-05  Score=66.13  Aligned_cols=134  Identities=22%  Similarity=0.242  Sum_probs=77.0

Q ss_pred             CCCCccEEEeeccCCccccchhHhhhccCCCCeEEeeec-cch---hHHHHhhccccCCCCCCceEEeeecc-cCCCCch
Q 036414           61 RLPTVQTLRISGDLSHYHSGVSKSLCELHKLECLKLANQ-GKM---WQITRMILSEYKFPPSLTQLSLSNTE-LIEDPMP  135 (252)
Q Consensus        61 ~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~-~~~---~~~~~l~~~~~~~~~~L~~l~l~~~~-~~~~~~~  135 (252)
                      .+++|+.+.+..+.......+......+++|+.|++.++ ...   ...   ...+...+++|+.+++..+. +++....
T Consensus       186 ~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~---~~~~~~~~~~L~~l~l~~~~~isd~~l~  262 (482)
T KOG1947|consen  186 SCPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLL---LLLLLSICRKLKSLDLSGCGLVTDIGLS  262 (482)
T ss_pred             hCchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhH---hhhhhhhcCCcCccchhhhhccCchhHH
Confidence            367777777777753232335556667788888887752 111   110   11222233777888887776 6655555


Q ss_pred             hhhc-CCCCceEEeccCC-ccCceeeecCCCCCccccEEEecCCccccc--eeccccccccccceee
Q 036414          136 TLEK-LPHLEVLKLKQNS-YFERKLACVGCSSFPQLKILHLKSMLWLEE--WTMGAGAMPKLESLIL  198 (252)
Q Consensus       136 ~l~~-~~~L~~L~l~~~~-~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~--~~~~~~~l~~L~~L~l  198 (252)
                      .++. +++|++|.+..|. +++..+... ...++.|++|++++|..+.+  +......+++++.+.+
T Consensus       263 ~l~~~c~~L~~L~l~~c~~lt~~gl~~i-~~~~~~L~~L~l~~c~~~~d~~l~~~~~~c~~l~~l~~  328 (482)
T KOG1947|consen  263 ALASRCPNLETLSLSNCSNLTDEGLVSI-AERCPSLRELDLSGCHGLTDSGLEALLKNCPNLRELKL  328 (482)
T ss_pred             HHHhhCCCcceEccCCCCccchhHHHHH-HHhcCcccEEeeecCccchHHHHHHHHHhCcchhhhhh
Confidence            5543 7788888865555 344444433 55677788888887775532  2222334555444443

>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=97.13  E-value=8.7e-05  Score=58.14  Aligned_cols=36  Identities=28%  Similarity=0.435  Sum_probs=15.3

Q ss_pred             CccccEEEecCCcccccee--ccccccccccceeeccCC
Q 036414          166 FPQLKILHLKSMLWLEEWT--MGAGAMPKLESLILNPCA  202 (252)
Q Consensus       166 ~~~L~~L~l~~~~~l~~~~--~~~~~l~~L~~L~l~~~~  202 (252)
                      +|+|+++.+++|+ ++.+.  .....+++|..|++.+|.
T Consensus        90 ~P~l~~l~ls~Nk-i~~lstl~pl~~l~nL~~Ldl~n~~  127 (260)
T KOG2739|consen   90 APNLKVLNLSGNK-IKDLSTLRPLKELENLKSLDLFNCS  127 (260)
T ss_pred             CCceeEEeecCCc-cccccccchhhhhcchhhhhcccCC
Confidence            3555555555554 33211  112334444555555554

>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]

Probab=97.09  E-value=6e-05  Score=65.82  Aligned_cols=34  Identities=26%  Similarity=0.215  Sum_probs=15.9

Q ss_pred             ccceeeccCCCCC-CChHHHHh-ccccceeecccCC
Q 036414          193 LESLILNPCAYLR-KLPEELWR-IKSLCKLELHWPQ  226 (252)
Q Consensus       193 L~~L~l~~~~~~~-~~p~~l~~-l~~L~~L~l~~~~  226 (252)
                      ++.|.+..|.... ..-..... +.+++.+++.+++
T Consensus       403 l~~L~l~~~~~~t~~~l~~~~~~~~~~~~l~~~~~~  438 (482)
T KOG1947|consen  403 LRVLNLSDCRLVTDKGLRCLADSCSNLKDLDLSGCR  438 (482)
T ss_pred             cceEecccCccccccchHHHhhhhhccccCCccCcc
Confidence            4666666665322 11111111 5556666666654

>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]

Probab=97.00  E-value=6.1e-05  Score=53.48  Aligned_cols=73  Identities=19%  Similarity=0.206  Sum_probs=39.3

Q ss_pred             cCCCCC--chhhc-CCCCCccEEEeeccCCccccchhHhhhccCCCCeEEeeeccchhHHHHhhc-cccCCCCCCceEEe
Q 036414           49 LHPSSC--TPDIL-SRLPTVQTLRISGDLSHYHSGVSKSLCELHKLECLKLANQGKMWQITRMIL-SEYKFPPSLTQLSL  124 (252)
Q Consensus        49 l~~~~~--~~~~l-~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~l~~-~~~~~~~~L~~l~l  124 (252)
                      ++.|.+  +|+.+ .+.+.++.|+++.|   ....+|..+..++.|+.+++.. +.+..    .| .+..+ .++.+|+.
T Consensus        60 ls~N~fk~fp~kft~kf~t~t~lNl~~n---eisdvPeE~Aam~aLr~lNl~~-N~l~~----~p~vi~~L-~~l~~Lds  130 (177)
T KOG4579|consen   60 LSDNGFKKFPKKFTIKFPTATTLNLANN---EISDVPEELAAMPALRSLNLRF-NPLNA----EPRVIAPL-IKLDMLDS  130 (177)
T ss_pred             cccchhhhCCHHHhhccchhhhhhcchh---hhhhchHHHhhhHHhhhccccc-Ccccc----chHHHHHH-HhHHHhcC
Confidence            444444  34443 23446666666666   4555666666666666666666 43322    33 33444 55566666


Q ss_pred             eecccC
Q 036414          125 SNTELI  130 (252)
Q Consensus       125 ~~~~~~  130 (252)
                      .++...
T Consensus       131 ~~na~~  136 (177)
T KOG4579|consen  131 PENARA  136 (177)
T ss_pred             CCCccc
Confidence            665554

>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=96.91  E-value=0.0004  Score=54.51  Aligned_cols=114  Identities=18%  Similarity=0.228  Sum_probs=69.5

Q ss_pred             CCcccCCCCCCcEecccCCCCC-chhhcCCCCCccEEEeeccCCccccchhHhhhccCCCCeEEeeeccchhHHHHhhcc
Q 036414           33 PKNYSSSLKNLIFISALHPSSC-TPDILSRLPTVQTLRISGDLSHYHSGVSKSLCELHKLECLKLANQGKMWQITRMILS  111 (252)
Q Consensus        33 ~~~~l~~l~~L~~L~~l~~~~~-~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~l~~~  111 (252)
                      +......+..|+.|+ +..... ....+..+++|++|.++.|.......+...+..+++|+++++++ +.+..+.. ++.
T Consensus        35 ~~gl~d~~~~le~ls-~~n~gltt~~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~-Nki~~lst-l~p  111 (260)
T KOG2739|consen   35 LGGLTDEFVELELLS-VINVGLTTLTNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSG-NKIKDLST-LRP  111 (260)
T ss_pred             cccccccccchhhhh-hhccceeecccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecC-Cccccccc-cch
Confidence            444445555666666 444433 45556678888899888884225555555556668888888888 54421000 335


Q ss_pred             ccCCCCCCceEEeeecccCC---CCchhhhcCCCCceEEecc
Q 036414          112 EYKFPPSLTQLSLSNTELIE---DPMPTLEKLPHLEVLKLKQ  150 (252)
Q Consensus       112 ~~~~~~~L~~l~l~~~~~~~---~~~~~l~~~~~L~~L~l~~  150 (252)
                      +..+ .+|..|++.+|..+.   .--..+..+++|+.|+-..
T Consensus       112 l~~l-~nL~~Ldl~n~~~~~l~dyre~vf~ll~~L~~LD~~d  152 (260)
T KOG2739|consen  112 LKEL-ENLKSLDLFNCSVTNLDDYREKVFLLLPSLKYLDGCD  152 (260)
T ss_pred             hhhh-cchhhhhcccCCccccccHHHHHHHHhhhhccccccc
Confidence            5566 778888888876553   2223455677777776643

>KOG2123 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.78  E-value=4.4e-05  Score=60.52  Aligned_cols=59  Identities=25%  Similarity=0.306  Sum_probs=24.1

Q ss_pred             CCCceEEeeecccCCCCchhhhcCCCCceEEeccCCccCceeeecCCCCCccccEEEecCCc
Q 036414          117 PSLTQLSLSNTELIEDPMPTLEKLPHLEVLKLKQNSYFERKLACVGCSSFPQLKILHLKSML  178 (252)
Q Consensus       117 ~~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~  178 (252)
                      +.|+.|.|+-|.++  ....+..|.+|++|.|..|.+.+..-.+- ..++|+|+.|.|..|+
T Consensus        41 p~lEVLsLSvNkIs--sL~pl~rCtrLkElYLRkN~I~sldEL~Y-LknlpsLr~LWL~ENP   99 (388)
T KOG2123|consen   41 PLLEVLSLSVNKIS--SLAPLQRCTRLKELYLRKNCIESLDELEY-LKNLPSLRTLWLDENP   99 (388)
T ss_pred             ccceeEEeeccccc--cchhHHHHHHHHHHHHHhcccccHHHHHH-HhcCchhhhHhhccCC
Confidence            44444444444443  22333444444444444444332111111 3344444444444444

>KOG3864 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.30  E-value=0.0013  Score=49.81  Aligned_cols=81  Identities=25%  Similarity=0.322  Sum_probs=52.6

Q ss_pred             CccEEEeeccCCccccchhHhhhccCCCCeEEeeeccch--hHHHHhhccccCCCCCCceEEeeec-ccCCCCchhhhcC
Q 036414           64 TVQTLRISGDLSHYHSGVSKSLCELHKLECLKLANQGKM--WQITRMILSEYKFPPSLTQLSLSNT-ELIEDPMPTLEKL  140 (252)
Q Consensus        64 ~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~--~~~~~l~~~~~~~~~~L~~l~l~~~-~~~~~~~~~l~~~  140 (252)
                      .++.++-+++.  ....-.+.+..++.++.+++.+|..+  +.    +..+++..++|+.|++++| +|++.....+..+
T Consensus       102 ~IeaVDAsds~--I~~eGle~L~~l~~i~~l~l~~ck~~dD~~----L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~l  175 (221)
T KOG3864|consen  102 KIEAVDASDSS--IMYEGLEHLRDLRSIKSLSLANCKYFDDWC----LERLGGLAPSLQDLDLSGCPRITDGGLACLLKL  175 (221)
T ss_pred             eEEEEecCCch--HHHHHHHHHhccchhhhheeccccchhhHH----HHHhcccccchheeeccCCCeechhHHHHHHHh
Confidence            35666666665  55555667777777888888776655  33    2333334477788888776 6676667777777


Q ss_pred             CCCceEEecc
Q 036414          141 PHLEVLKLKQ  150 (252)
Q Consensus       141 ~~L~~L~l~~  150 (252)
                      ++|+.|.+.+
T Consensus       176 knLr~L~l~~  185 (221)
T KOG3864|consen  176 KNLRRLHLYD  185 (221)
T ss_pred             hhhHHHHhcC
Confidence            7777777643

>KOG3864 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.10  E-value=0.00062  Score=51.54  Aligned_cols=34  Identities=15%  Similarity=0.324  Sum_probs=15.9

Q ss_pred             CCceEEeeecccCCCCchhhhcCCCCceEEeccC
Q 036414          118 SLTQLSLSNTELIEDPMPTLEKLPHLEVLKLKQN  151 (252)
Q Consensus       118 ~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~  151 (252)
                      .++.++.+++.+..+....+..++.++.|.+..|
T Consensus       102 ~IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~c  135 (221)
T KOG3864|consen  102 KIEAVDASDSSIMYEGLEHLRDLRSIKSLSLANC  135 (221)
T ss_pred             eEEEEecCCchHHHHHHHHHhccchhhhheeccc
Confidence            3344444444444444444444555555555433

>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=94.73  E-value=0.025  Score=26.64  Aligned_cols=19  Identities=21%  Similarity=0.142  Sum_probs=11.1

Q ss_pred             cccEEEecCCccccceeccc
Q 036414          168 QLKILHLKSMLWLEEWTMGA  187 (252)
Q Consensus       168 ~L~~L~l~~~~~l~~~~~~~  187 (252)
                      +|++|++++|+ ++.+|..+
T Consensus         1 ~L~~Ldls~n~-l~~ip~~~   19 (22)
T PF00560_consen    1 NLEYLDLSGNN-LTSIPSSF   19 (22)
T ss_dssp             TESEEEETSSE-ESEEGTTT
T ss_pred             CccEEECCCCc-CEeCChhh
Confidence            35666666664 66555543

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....

>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A

Probab=94.55  E-value=0.095  Score=36.85  Aligned_cols=30  Identities=10%  Similarity=0.302  Sum_probs=10.7

Q ss_pred             CCCceEEeeecccCCCCchhhhcCCCCceEEe
Q 036414          117 PSLTQLSLSNTELIEDPMPTLEKLPHLEVLKL  148 (252)
Q Consensus       117 ~~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l  148 (252)
                      ++++.+.+..+ +.......+..+ +++.+.+
T Consensus        81 ~~l~~i~~~~~-~~~i~~~~f~~~-~l~~i~~  110 (129)
T PF13306_consen   81 TNLKNIDIPSN-ITEIGSSSFSNC-NLKEINI  110 (129)
T ss_dssp             TTECEEEETTT--BEEHTTTTTT--T--EEE-
T ss_pred             ccccccccCcc-ccEEchhhhcCC-CceEEEE
Confidence            55555555332 222223334444 5555555

>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D

Probab=94.53  E-value=0.032  Score=24.45  Aligned_cols=15  Identities=27%  Similarity=0.339  Sum_probs=6.2

Q ss_pred             cccEEEecCCccccce
Q 036414          168 QLKILHLKSMLWLEEW  183 (252)
Q Consensus       168 ~L~~L~l~~~~~l~~~  183 (252)
                      +|+.|++++|+ ++++
T Consensus         2 ~L~~L~l~~n~-L~~l   16 (17)
T PF13504_consen    2 NLRTLDLSNNR-LTSL   16 (17)
T ss_dssp             T-SEEEETSS---SSE
T ss_pred             ccCEEECCCCC-CCCC
Confidence            45555555555 4443

...

>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A

Probab=92.73  E-value=0.32  Score=34.09  Aligned_cols=80  Identities=10%  Similarity=0.147  Sum_probs=33.1

Q ss_pred             CCCCCccEEEeeccCCccccchhHhhhccCCCCeEEeeeccchhHHHHhhc--cccCCCCCCceEEeeecccCCCCchhh
Q 036414           60 SRLPTVQTLRISGDLSHYHSGVSKSLCELHKLECLKLANQGKMWQITRMIL--SEYKFPPSLTQLSLSNTELIEDPMPTL  137 (252)
Q Consensus        60 ~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~l~~--~~~~~~~~L~~l~l~~~~~~~~~~~~l  137 (252)
                      ..+++|+.+.+...   ....-...+..+++|+.+.+...  +..    ++  .+... ++++.+.+.. .+.......+
T Consensus         9 ~~~~~l~~i~~~~~---~~~I~~~~F~~~~~l~~i~~~~~--~~~----i~~~~F~~~-~~l~~i~~~~-~~~~i~~~~F   77 (129)
T PF13306_consen    9 YNCSNLESITFPNT---IKKIGENAFSNCTSLKSINFPNN--LTS----IGDNAFSNC-KSLESITFPN-NLKSIGDNAF   77 (129)
T ss_dssp             TT-TT--EEEETST-----EE-TTTTTT-TT-SEEEESST--TSC----E-TTTTTT--TT-EEEEETS-TT-EE-TTTT
T ss_pred             hCCCCCCEEEECCC---eeEeChhhccccccccccccccc--ccc----cceeeeecc-cccccccccc-cccccccccc
Confidence            34555666555432   22222233455556666666542  222    22  33333 5667776654 2222233455


Q ss_pred             hcCCCCceEEecc
Q 036414          138 EKLPHLEVLKLKQ  150 (252)
Q Consensus       138 ~~~~~L~~L~l~~  150 (252)
                      ..+++++.+.+..
T Consensus        78 ~~~~~l~~i~~~~   90 (129)
T PF13306_consen   78 SNCTNLKNIDIPS   90 (129)
T ss_dssp             TT-TTECEEEETT
T ss_pred             cccccccccccCc
Confidence            5677777777743

>smart00370 LRR Leucine-rich repeats, outliers

Probab=84.67  E-value=0.64  Score=22.54  Aligned_cols=17  Identities=29%  Similarity=0.427  Sum_probs=8.3

Q ss_pred             ccccEEEecCCcccccee
Q 036414          167 PQLKILHLKSMLWLEEWT  184 (252)
Q Consensus       167 ~~L~~L~l~~~~~l~~~~  184 (252)
                      ++|+.|++++|+ ++.+|
T Consensus         2 ~~L~~L~L~~N~-l~~lp   18 (26)
T smart00370        2 PNLRELDLSNNQ-LSSLP   18 (26)
T ss_pred             CCCCEEECCCCc-CCcCC
Confidence            345555555554 44443

>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily

Probab=84.67  E-value=0.64  Score=22.54  Aligned_cols=17  Identities=29%  Similarity=0.427  Sum_probs=8.3

Q ss_pred             ccccEEEecCCcccccee
Q 036414          167 PQLKILHLKSMLWLEEWT  184 (252)
Q Consensus       167 ~~L~~L~l~~~~~l~~~~  184 (252)
                      ++|+.|++++|+ ++.+|
T Consensus         2 ~~L~~L~L~~N~-l~~lp   18 (26)
T smart00369        2 PNLRELDLSNNQ-LSSLP   18 (26)
T ss_pred             CCCCEEECCCCc-CCcCC
Confidence            345555555554 44443

>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A

Probab=83.35  E-value=0.7  Score=21.93  Aligned_cols=12  Identities=33%  Similarity=0.661  Sum_probs=6.4

Q ss_pred             CCccEEEeeccC
Q 036414           63 PTVQTLRISGDL   74 (252)
Q Consensus        63 ~~L~~L~l~~~~   74 (252)
                      ++|++|++++|.
T Consensus         2 ~~L~~L~l~~n~   13 (24)
T PF13516_consen    2 PNLETLDLSNNQ   13 (24)
T ss_dssp             TT-SEEE-TSSB
T ss_pred             CCCCEEEccCCc
Confidence            566666666664

...

>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily

Probab=82.51  E-value=0.84  Score=22.21  Aligned_cols=12  Identities=42%  Similarity=0.794  Sum_probs=6.6

Q ss_pred             ccccceeeccCC
Q 036414          191 PKLESLILNPCA  202 (252)
Q Consensus       191 ~~L~~L~l~~~~  202 (252)
                      ++|+.|++++|.
T Consensus         2 ~~L~~L~l~~C~   13 (26)
T smart00367        2 PNLRELDLSGCT   13 (26)
T ss_pred             CCCCEeCCCCCC
Confidence            455555555554

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	252
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	2e-07
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	4e-05
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	8e-04
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	2e-06
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	4e-06
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	3e-06
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	2e-05
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	5e-06
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	1e-04
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	6e-06
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	3e-05
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	3e-05
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	5e-05
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	5e-05
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	8e-05
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	9e-05
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	8e-05
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	1e-04
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	4e-04
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	2e-04
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	2e-04
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	2e-04
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	2e-04
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	6e-04
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	6e-04
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	6e-04
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	8e-04
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	8e-04

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 50.4 bits (121), Expect = 2e-07
 Identities = 39/216 (18%), Positives = 76/216 (35%), Gaps = 34/216 (15%)

Query: 19  LMHLNFGSITLPAPPKNYSSSLKNLI----FISALHPSSCTPDILSRLPTVQTLRISG-D 73
             HL    +     P +  +++  L      +  L  ++      +R   + +L +    
Sbjct: 11  CSHLKLTQV-----PDDLPTNITVLNLTHNQLRRLPAAN-----FTRYSQLTSLDVGFNT 60

Query: 74  LSHYHSGVSKSLCELHKLECLKLA-NQGKMWQITRMILSEYKFPPSLTQLSLSNTELIED 132
           +S           +L  L+ L L  N+     ++++    + F  +LT+L L +  + + 
Sbjct: 61  ISKLEPE---LCQKLPMLKVLNLQHNE-----LSQLSDKTFAFCTNLTELHLMSNSIQKI 112

Query: 133 PMPTLEKLPHLEVLKLKQNSYFERKLACVGCSSFPQLKILHLKS--MLWLEEWTMGAGAM 190
                 K  +L  L L  N     KL          L+ L L +  +  L+   +   A 
Sbjct: 113 KNNPFVKQKNLITLDLSHNGLSSTKLG--TQVQLENLQELLLSNNKIQALKSEELDIFAN 170

Query: 191 PKLESLIL--NPCAYLRKL-PEELWRIKSLCKLELH 223
             L+ L L  N    +++  P     I  L  L L+
Sbjct: 171 SSLKKLELSSNQ---IKEFSPGCFHAIGRLFGLFLN 203

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 43.5 bits (103), Expect = 4e-05
 Identities = 32/168 (19%), Positives = 64/168 (38%), Gaps = 17/168 (10%)

Query: 16  MQKLMHLNFGSITLPAPPKNYSSSLKNLIFIS----ALHPSSCTPDILSRLPTV--QTLR 69
           ++ L HLN     +P    N  + L NL ++S         + T +    L       L 
Sbjct: 328 LKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILN 387

Query: 70  ISG-DLSHYHSGVSKSLCELHKLECLKLANQGKMWQITRMI-LSEYKFPPSLTQLSLSNT 127
           ++   +S   S    +   L  LE L L       +I + +   E++   ++ ++ LS  
Sbjct: 388 LTKNKISKIESD---AFSWLGHLEVLDLGLN----EIGQELTGQEWRGLENIFEIYLSYN 440

Query: 128 ELIEDPMPTLEKLPHLEVLKLKQNSYFERKLACVGC-SSFPQLKILHL 174
           + ++    +   +P L+ L L++ +  +   +          L IL L
Sbjct: 441 KYLQLTRNSFALVPSLQRLMLRRVA-LKNVDSSPSPFQPLRNLTILDL 487

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 39.6 bits (93), Expect = 8e-04
 Identities = 26/147 (17%), Positives = 44/147 (29%), Gaps = 20/147 (13%)

Query: 52  SSCTPDILSRLPTVQTLRISG------DLSHYHSGVSKSLCELHKLECLKLANQGKMWQI 105
           ++   D+L  L  ++ L +               G    L  L  L  L L +       
Sbjct: 493 ANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESN----GF 548

Query: 106 TRMILSEYKFPPSLTQLSLSNTELIEDPMPTLEKLPHLEVLKLKQNSYFERKLACVGCSS 165
             + +  +K    L  + L    L   P         L+ L L++N         V   +
Sbjct: 549 DEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKN-LITSVEKKVFGPA 607

Query: 166 FPQLKILHL---------KSMLWLEEW 183
           F  L  L +         +S+ W   W
Sbjct: 608 FRNLTELDMRFNPFDCTCESIAWFVNW 634

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 47.7 bits (114), Expect = 2e-06
 Identities = 39/164 (23%), Positives = 54/164 (32%), Gaps = 25/164 (15%)

Query: 19  LMHLNFGSITLPAPPKNYSSSLKNLIF----ISALHPSSCTPDILSRLPTVQTLRISG-D 73
            M LNF  I     P N   S KNL      +  L   S         P +Q L +S  +
Sbjct: 14  CMELNFYKI-----PDNLPFSTKNLDLSFNPLRHLGSYS-----FFSFPELQVLDLSRCE 63

Query: 74  LSHYHSGVSKSLCELHKLECLKLA-NQGKMWQITRMILSEYKFPPSLTQLSLSNTELIED 132
           +     G   +   L  L  L L  N      I  + L  +    SL +L    T L   
Sbjct: 64  IQTIEDG---AYQSLSHLSTLILTGNP-----IQSLALGAFSGLSSLQKLVAVETNLASL 115

Query: 133 PMPTLEKLPHLEVLKLKQNSYFERKLACVGCSSFPQLKILHLKS 176
               +  L  L+ L +  N   +        S+   L+ L L S
Sbjct: 116 ENFPIGHLKTLKELNVAHN-LIQSFKLPEYFSNLTNLEHLDLSS 158

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 46.6 bits (111), Expect = 4e-06
 Identities = 37/177 (20%), Positives = 58/177 (32%), Gaps = 17/177 (9%)

Query: 4   SYIDHSSEDIWMMQKLMHLNFGSITLPAPPKNYSSSLKNLIFIS----ALHPSSCTPDIL 59
                       ++ L  L F S             L +L F+      L    C     
Sbjct: 312 VNCKFGQFPTLKLKSLKRLTFTSNKGGNAFSE--VDLPSLEFLDLSRNGLSFKGCCSQSD 369

Query: 60  SRLPTVQTLRISGDLSH-YHSGVSKSLCELHKLECLKLANQGKMWQITRMI-LSEYKFPP 117
               +++ L    DLS      +S +   L +LE L   +      + +M   S +    
Sbjct: 370 FGTTSLKYL----DLSFNGVITMSSNFLGLEQLEHLDFQH----SNLKQMSEFSVFLSLR 421

Query: 118 SLTQLSLSNTELIEDPMPTLEKLPHLEVLKLKQNSYFERKLACVGCSSFPQLKILHL 174
           +L  L +S+T            L  LEVLK+  NS+ E  L  +  +    L  L L
Sbjct: 422 NLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIF-TELRNLTFLDL 477

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 47.0 bits (112), Expect = 3e-06
 Identities = 35/178 (19%), Positives = 69/178 (38%), Gaps = 20/178 (11%)

Query: 52  SSCTPDILSRLPTVQTLRISG-DLSHYHSGVSKSLCELHKLECLKLANQGKMWQITRMIL 110
           +S   + LS L  +  LR+   +++        S   L++L+ L++++    W     + 
Sbjct: 165 TSIPTEALSHLHGLIVLRLRHLNINAIRDY---SFKRLYRLKVLEISH----WPYLDTMT 217

Query: 111 SEYKFPPSLTQLSLSNTELIEDPMPTLEKLPHLEVLKLKQNSYFERKLACVGCSSF---P 167
               +  +LT LS+++  L   P   +  L +L  L L  N      ++ +  S      
Sbjct: 218 PNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYN-----PISTIEGSMLHELL 272

Query: 168 QLKILHLKSMLWLEEWTMGA-GAMPKLESLILNPCAYLRKLPEEL-WRIKSLCKLELH 223
           +L+ + L     L      A   +  L  L ++    L  L E +   + +L  L L 
Sbjct: 273 RLQEIQLVGGQ-LAVVEPYAFRGLNYLRVLNVSGNQ-LTTLEESVFHSVGNLETLILD 328

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 43.9 bits (104), Expect = 2e-05
 Identities = 34/227 (14%), Positives = 75/227 (33%), Gaps = 49/227 (21%)

Query: 29  LPAPPKNYSSSLKNLI----FISALHPSSCTPDILSRLPTVQTLRISG-DLSHYHSGVSK 83
             A P+   +  + L      I  L+         +  P ++ L ++   +S    G   
Sbjct: 23  FVAVPEGIPTETRLLDLGKNRIKTLNQDE-----FASFPHLEELELNENIVSAVEPG--- 74

Query: 84  SLCELHKLECLKLANQGKMWQITRMILSEYKFPPSLTQLSLSNTELIEDPMPTLEKLPHL 143
           +   L  L  L L +     ++  + L  +    +LT+L +S  +++       + L +L
Sbjct: 75  AFNNLFNLRTLGLRSN----RLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNL 130

Query: 144 EVLKLKQNSYFERKLACVGCSSF---PQLKILHL-------------KSMLWLEE----- 182
           + L++  N      L  +   +F     L+ L L               +  L       
Sbjct: 131 KSLEVGDN-----DLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRH 185

Query: 183 ---WTMGAGA---MPKLESLILNPCAYLRKLPEELWRIKSLCKLELH 223
                +   +   + +L+ L ++   YL  +        +L  L + 
Sbjct: 186 LNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSIT 232

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 46.2 bits (110), Expect = 5e-06
 Identities = 33/164 (20%), Positives = 50/164 (30%), Gaps = 25/164 (15%)

Query: 19  LMHLNFGSITLPAPPKNYSSSLKNLIF----ISALHPSSCTPDILSRLPTVQTLRISG-D 73
            M      +     P +  SS KN+      +  L   S      S    +Q L +S  +
Sbjct: 18  CMDQKLSKV-----PDDIPSSTKNIDLSFNPLKILKSYS-----FSNFSELQWLDLSRCE 67

Query: 74  LSHYHSGVSKSLCELHKLECLKLA-NQGKMWQITRMILSEYKFPPSLTQLSLSNTELIED 132
           +         +   LH L  L L  N      I       +    SL  L    T+L   
Sbjct: 68  IETIEDK---AWHGLHHLSNLILTGNP-----IQSFSPGSFSGLTSLENLVAVETKLASL 119

Query: 133 PMPTLEKLPHLEVLKLKQNSYFERKLACVGCSSFPQLKILHLKS 176
               + +L  L+ L +  N     KL     S+   L  + L  
Sbjct: 120 ESFPIGQLITLKKLNVAHNFIHSCKLPAY-FSNLTNLVHVDLSY 162

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 41.9 bits (99), Expect = 1e-04
 Identities = 35/165 (21%), Positives = 58/165 (35%), Gaps = 17/165 (10%)

Query: 16  MQKLMHLNFGSITLPAPPKNYSSSLKNLIFIS----ALHPSSCTPDILSRLPTVQTLRIS 71
           +  L  L           K    +L +L ++     AL  S C         +++ L   
Sbjct: 327 LPFLKSLTLTMNKGSISFKK--VALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHL--- 381

Query: 72  GDLSH-YHSGVSKSLCELHKLECLKLANQGKMWQITRMI-LSEYKFPPSLTQLSLSNTEL 129
            DLS      +S +   L +L+ L   +      + R+   S +     L  L +S T  
Sbjct: 382 -DLSFNGAIIMSANFMGLEELQHLDFQHS----TLKRVTEFSAFLSLEKLLYLDISYTNT 436

Query: 130 IEDPMPTLEKLPHLEVLKLKQNSYFERKLACVGCSSFPQLKILHL 174
             D       L  L  LK+  NS+ +  L+ V  ++   L  L L
Sbjct: 437 KIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNV-FANTTNLTFLDL 480

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 45.3 bits (108), Expect = 6e-06
 Identities = 40/177 (22%), Positives = 80/177 (45%), Gaps = 18/177 (10%)

Query: 56  PDILSRLPTVQTLRISG-DLSHYHSGVSKSLCELHKLECLKLANQGKMWQI-----TRMI 109
           PD + +   ++TL ++   L      +  S+  L++L  L +    ++ ++     +   
Sbjct: 120 PDTMQQFAGLETLTLARNPLRA----LPASIASLNRLRELSIRACPELTELPEPLASTDA 175

Query: 110 LSEYKFPPSLTQLSLSNTELIEDPMPTLEKLPHLEVLKLKQNSYFERKLACVGCS--SFP 167
             E++   +L  L L  T +   P  ++  L +L+ LK++ +      L+ +G +    P
Sbjct: 176 SGEHQGLVNLQSLRLEWTGIRSLP-ASIANLQNLKSLKIRNS-----PLSALGPAIHHLP 229

Query: 168 QLKILHLKSMLWLEEWTMGAGAMPKLESLILNPCAYLRKLPEELWRIKSLCKLELHW 224
           +L+ L L+    L  +    G    L+ LIL  C+ L  LP ++ R+  L KL+L  
Sbjct: 230 KLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRG 286

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 43.5 bits (103), Expect = 3e-05
 Identities = 40/163 (24%), Positives = 53/163 (32%), Gaps = 23/163 (14%)

Query: 19  LMHLNFGSITLPAPPKNYSSSLKNLIF----ISALHPSSCTPDILSRLPTVQTLRISG-D 73
            M LNF  I     P N   S KNL      +  L   S         P +Q L +S  +
Sbjct: 14  CMELNFYKI-----PDNLPFSTKNLDLSFNPLRHLGSYS-----FFSFPELQVLDLSRCE 63

Query: 74  LSHYHSGVSKSLCELHKLECLKLANQGKMWQITRMILSEYKFPPSLTQLSLSNTELIEDP 133
           +     G       L  L  L L        I  + L  +    SL +L    T L    
Sbjct: 64  IQTIEDGA---YQSLSHLSTLILTGN----PIQSLALGAFSGLSSLQKLVAVETNLASLE 116

Query: 134 MPTLEKLPHLEVLKLKQNSYFERKLACVGCSSFPQLKILHLKS 176
              +  L  L+ L +  N     KL     S+   L+ L L S
Sbjct: 117 NFPIGHLKTLKELNVAHNLIQSFKLPEY-FSNLTNLEHLDLSS 158

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 43.5 bits (103), Expect = 3e-05
 Identities = 27/128 (21%), Positives = 45/128 (35%), Gaps = 11/128 (8%)

Query: 49  LHPSSCTPDILSRLPTVQTLRISG-DLSHYHSGVSKSLCELHKLECLKLANQGKMWQITR 107
           L    C         +++ L +S   +      +S +   L +LE L   +      + +
Sbjct: 359 LSFKGCCSQSDFGTTSLKYLDLSFNGVIT----MSSNFLGLEQLEHLDFQHS----NLKQ 410

Query: 108 MI-LSEYKFPPSLTQLSLSNTELIEDPMPTLEKLPHLEVLKLKQNSYFERKLACVGCSSF 166
           M   S +    +L  L +S+T            L  LEVLK+  NS F+        +  
Sbjct: 411 MSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNS-FQENFLPDIFTEL 469

Query: 167 PQLKILHL 174
             L  L L
Sbjct: 470 RNLTFLDL 477

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A Length = 336

 Score = 42.9 bits (101), Expect = 5e-05
 Identities = 30/156 (19%), Positives = 48/156 (30%), Gaps = 7/156 (4%)

Query: 49  LHPSSCTPDILSRLPTVQTLRISGDLSHYHSGVSKSLCELHKLECLKLANQGKMWQITRM 108
           L   +  PD+  RL +   +          S + + L E      ++  +          
Sbjct: 54  LTGKNLHPDVTGRLLSQGVI----AFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVST 109

Query: 109 ILSEYKFPPSLTQLSLSNTELIEDPMPTLEKLPHLEVLKLKQNSYFERKLACVGCSSFPQ 168
           +         L  LSL    L +  + TL K  +L  L L   S F         SS  +
Sbjct: 110 LHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSR 169

Query: 169 LKILHLKSMLWLEEWTMG---AGAMPKLESLILNPC 201
           L  L+L       E  +    A     +  L L+  
Sbjct: 170 LDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGY 205

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 43.3 bits (102), Expect = 5e-05
 Identities = 24/118 (20%), Positives = 43/118 (36%), Gaps = 7/118 (5%)

Query: 58  ILSRLPTVQTLRISG-DLSHYHSGVSKSLCELHKLECLKLANQGKMWQITRMILSEYKFP 116
           +   L T + L +S   +    +    S   L +L+ L+L +Q     I +         
Sbjct: 19  VPQVLNTTERLLLSFNYIRTVTAS---SFPFLEQLQLLELGSQYTPLTIDKEAFRNL--- 72

Query: 117 PSLTQLSLSNTELIEDPMPTLEKLPHLEVLKLKQNSYFERKLACVGCSSFPQLKILHL 174
           P+L  L L ++++        + L HL  L+L      +  L      +   L  L L
Sbjct: 73  PNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDL 130

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 42.7 bits (101), Expect = 8e-05
 Identities = 35/170 (20%), Positives = 67/170 (39%), Gaps = 16/170 (9%)

Query: 38  SSLKNLIFIS----ALHPSSCTPDILSRLPTVQTLRISG-DLSHYHSGVSKSLCELHKLE 92
            +L+NL  +      +  S C    L  L  +Q+L +S  +     +    +  E  +LE
Sbjct: 347 ENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTE---AFKECPQLE 403

Query: 93  CLKLANQGKMWQITRMI-LSEYKFPPSLTQLSLSNTELIEDPMPTLEKLPHLEVLKLKQN 151
            L LA      ++      S ++    L  L+LS++ L        + LP L+ L L+ N
Sbjct: 404 LLDLAFT----RLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGN 459

Query: 152 SYFERKLACVGC-SSFPQLKILHLKSMLWLEEWTMGA-GAMPKLESLILN 199
            + +  +       +  +L+IL L     L      A  ++  +  + L+
Sbjct: 460 HFPKGNIQKTNSLQTLGRLEILVLSFCD-LSSIDQHAFTSLKMMNHVDLS 508

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 42.3 bits (100), Expect = 9e-05
 Identities = 37/241 (15%), Positives = 67/241 (27%), Gaps = 59/241 (24%)

Query: 19  LMHLNFGSITLPAPPKNYSSSLKNLIF----ISALHPSSCTPDILSRLPTVQTLRISG-D 73
             +L    I     P    +S + L F    +  +  ++      SRL  +  L ++   
Sbjct: 19  CENLGLNEI-----PGTLPNSTECLEFSFNVLPTIQNTT-----FSRLINLTFLDLTRCQ 68

Query: 74  LSHYHSGVSKSLCELHKLECLKLA-NQGKMWQITRMILSEYKFPPSLTQLSLSN---TEL 129
           +   H     +    H+L+ L L  N      +  M  +    P +L  L       + +
Sbjct: 69  IYWIHED---TFQSQHRLDTLVLTANP-----LIFMAETALSGPKALKHLFFIQTGISSI 120

Query: 130 IED---------------------PMPTLEKLPHLEVLKLKQNSYFERKLACVGCSSF-- 166
                                    +P       L+VL  + N      +  +       
Sbjct: 121 DFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNN-----AIHYLSKEDMSS 175

Query: 167 -PQLKILHLK-SMLWLEEWTMGAGAMPKLESLILNPCAYLRKLPEELW--RIKSLCKLEL 222
             Q   L L  +   +     GA      +SL       L  + + L    I+SL     
Sbjct: 176 LQQATNLSLNLNGNDIAGIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTF 235

Query: 223 H 223
            
Sbjct: 236 E 236

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 42.4 bits (100), Expect = 8e-05
 Identities = 35/224 (15%), Positives = 75/224 (33%), Gaps = 25/224 (11%)

Query: 18  KLMHLNFGSITLPAPPKNYSSSLKNLIFISALHPSSCTPDILSRLP---------TVQTL 68
           +L   N         P +  SS    +       +  + + L +L               
Sbjct: 202 ELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDC 261

Query: 69  RISGDLSHYHSGVSKSLCELHKLECLKLA----NQGKMWQITRMILSEYKFPPSLTQLSL 124
            ++G L  ++   S  + EL K+E + +      Q  ++     + S       + ++++
Sbjct: 262 TLNG-LGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLL---EKVKRITV 317

Query: 125 SNTELIEDPMPTLEKLPHLEVLKLKQNS-YFERKLACVGCSSFPQLKILHLK----SMLW 179
            N+++   P    + L  LE L L +N    E         ++P L+ L L       + 
Sbjct: 318 ENSKVFLVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQ 377

Query: 180 LEEWTMGAGAMPKLESLILNPCAYLRKLPEELWRIKSLCKLELH 223
                +    +  L SL ++       +P+     + +  L L 
Sbjct: 378 KTGEIL--LTLKNLTSLDISRN-TFHPMPDSCQWPEKMRFLNLS 418

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 42.2 bits (99), Expect = 1e-04
 Identities = 27/230 (11%), Positives = 68/230 (29%), Gaps = 33/230 (14%)

Query: 16  MQKLMHLNFGS---ITLPAPPKNYSSSLKNLIF----ISALHPSSCTPDILSRLPTVQTL 68
             KL  L         +P     ++  ++ L F    +  +            +  + ++
Sbjct: 594 NVKLTDLKLDYNQIEEIPEDFCAFTDQVEGLGFSHNKLKYIPNIFN----AKSVYVMGSV 649

Query: 69  RISG-DLSHYHSGVSKSL--CELHKLECLKLANQGKMWQITRMILSEYKFPPSLTQLSLS 125
             S   +      +S S+   +      + L+      +I +     +     ++ + LS
Sbjct: 650 DFSYNKIGSEGRNISCSMDDYKGINASTVTLSYN----EIQKFPTELFATGSPISTIILS 705

Query: 126 N-------TELIEDPMPTLEKLPHLEVLKLKQNSYFERKLACVGCSSFPQLKILHLKSML 178
           N          ++      +    L  + L+ N            ++ P L  + + S  
Sbjct: 706 NNLMTSIPENSLKPKDGNYKNTYLLTTIDLRFNK-LTSLSDDFRATTLPYLSNMDV-SYN 763

Query: 179 WLEEWTMGAGAMPKLESL------ILNPCAYLRKLPEELWRIKSLCKLEL 222
               +        +L++              LR+ P  +    SL +L++
Sbjct: 764 CFSSFPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQI 813

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 40.6 bits (95), Expect = 4e-04
 Identities = 30/224 (13%), Positives = 61/224 (27%), Gaps = 39/224 (17%)

Query: 17  QKLMHLNFGSITLPAPPKNYSSSLKNLIFISALHPSSCTPDILSRLPTVQTLRISGDLSH 76
           +  + +++  + L    +   S L                D    L   Q   ++  ++ 
Sbjct: 380 KHRIRMHYKKMFLDYDQRLNLSDLLQDAINRNPEMKPIKKDSRISLKDTQIGNLTNRIT- 438

Query: 77  YHSGVSKSLCELHKLECLKLAN---------------QGKMWQITRMILSEYKFPPSLTQ 121
               +SK++  L KL+ +  AN                    +        +     LT 
Sbjct: 439 ---FISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTD 495

Query: 122 LSLSNTELIEDPMPTLEKLPHLEVLKLKQNSYFERKLACVGCSSFPQLKILHLKSMLWLE 181
           + L N   +      L  LP L+ L +  N            +     +           
Sbjct: 496 VELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDE----------- 544

Query: 182 EWTMGAGAMPKLESLILNPCAYLRKLPEE--LWRIKSLCKLELH 223
                    PK++   +     L + P    L ++  L  L+  
Sbjct: 545 ------DTGPKIQIFYMGYNN-LEEFPASASLQKMVKLGLLDCV 581

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 41.4 bits (97), Expect = 2e-04
 Identities = 35/205 (17%), Positives = 72/205 (35%), Gaps = 27/205 (13%)

Query: 33  PKNYSSSLKNLIF----ISALHPSSCTPDILSRLPTVQTLRISGD--LSHYHSGVSKSLC 86
           P +   +   L F    +  +   +      S    ++ + IS +  L    + V  +L 
Sbjct: 25  PSDLPRNAIELRFVLTKLRVIQKGA-----FSGFGDLEKIEISQNDVLEVIEADVFSNLP 79

Query: 87  ELHKLECLKLANQGKMWQITRMILSEYKFPPSLTQLSLSNTELIEDPMPTLEKLPHLEVL 146
           +LH++    +     +  I           P+L  L +SNT +   P           +L
Sbjct: 80  KLHEIR---IEKANNLLYINPEAFQNL---PNLQYLLISNTGIKHLPDVHKIHSLQKVLL 133

Query: 147 KLKQNSYFERKLACVGCSSF----PQLKILHLKSMLWLEEWTMGAGAMPKLESLILNPCA 202
            ++ N      +  +  +SF     +  IL L +   ++E    A    +L+ L L+   
Sbjct: 134 DIQDNI----NIHTIERNSFVGLSFESVILWL-NKNGIQEIHNSAFNGTQLDELNLSDNN 188

Query: 203 YLRKLPEE-LWRIKSLCKLELHWPQ 226
            L +LP +          L++   +
Sbjct: 189 NLEELPNDVFHGASGPVILDISRTR 213

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 41.2 bits (97), Expect = 2e-04
 Identities = 32/164 (19%), Positives = 56/164 (34%), Gaps = 19/164 (11%)

Query: 16  MQKLMHLNFGSITLPAPPKNYSSSLKNL--IFISALHPSSCTPDILSRLPTVQTLRISG- 72
           +     + F + T+   P     S + +  + ++ L          +   T+Q L +   
Sbjct: 44  LNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFN 103

Query: 73  DLSHYHSGVSKSLCELHKLECLKLANQGKMWQITRMILSEYKFP--PSLTQLSLSNTELI 130
            + +    V      +  L  L L        ++   L    F   P LT LS+SN  L 
Sbjct: 104 AIRYLPPHV---FQNVPLLTVLVLERN----DLSS--LPRGIFHNTPKLTTLSMSNNNLE 154

Query: 131 EDPMPTLEKLPHLEVLKLKQNSYFERKLACVGCSSFPQLKILHL 174
                T +    L+ L+L  N     +L  V  S  P L   ++
Sbjct: 155 RIEDDTFQATTSLQNLQLSSN-----RLTHVDLSLIPSLFHANV 193

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 41.2 bits (97), Expect = 2e-04
 Identities = 14/167 (8%), Positives = 42/167 (25%), Gaps = 11/167 (6%)

Query: 58  ILSRLPTVQTLRISGDLSHYHSGVSKSLCELHKLECLKLA-NQGKMWQITRMILSEYKFP 116
               +    +      +  ++      +    + +   L  +        + I    +  
Sbjct: 125 GPKGISANMSDEQKQKMRMHYQK--TFVDYDPREDFSDLIKDCINSDPQQKSIKKSSRIT 182

Query: 117 PSLTQLSLSNTELIEDPMPTLEKLPHLEVLKLKQNSYFERKLACVGCSSFPQLKILHLKS 176
              TQ+   +  +       + +L  L    +  +                + +      
Sbjct: 183 LKDTQIGQLSNNITFVS-KAVMRLTKLRQFYMGNS-----PFVAENICEAWENENSEYAQ 236

Query: 177 MLWLEEWTMGAGAMPKLESLILNPCAYLRKLPEELWRIKSLCKLELH 223
               E+       +  L  + +  C  L KLP  L  +  +  + + 
Sbjct: 237 QYKTEDLKWDN--LKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVA 281

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 41.1 bits (96), Expect = 2e-04
 Identities = 32/164 (19%), Positives = 56/164 (34%), Gaps = 19/164 (11%)

Query: 16  MQKLMHLNFGSITLPAPPKNYSSSLKNL--IFISALHPSSCTPDILSRLPTVQTLRISG- 72
           +     + F + T+   P     S + +  + ++ L          +   T+Q L +   
Sbjct: 50  LNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFN 109

Query: 73  DLSHYHSGVSKSLCELHKLECLKLANQGKMWQITRMILSEYKFP--PSLTQLSLSNTELI 130
            + +    V      +  L  L L        ++   L    F   P LT LS+SN  L 
Sbjct: 110 AIRYLPPHV---FQNVPLLTVLVLERN----DLSS--LPRGIFHNTPKLTTLSMSNNNLE 160

Query: 131 EDPMPTLEKLPHLEVLKLKQNSYFERKLACVGCSSFPQLKILHL 174
                T +    L+ L+L  N     +L  V  S  P L   ++
Sbjct: 161 RIEDDTFQATTSLQNLQLSSN-----RLTHVDLSLIPSLFHANV 199

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 39.2 bits (92), Expect = 6e-04
 Identities = 21/85 (24%), Positives = 30/85 (35%), Gaps = 1/85 (1%)

Query: 115 FPPSLTQLSLSNTELIEDPMPTLEKLPHLEVLKLKQNSYFERKLACVGCSSFPQLKILHL 174
            P S T+L L + +L   P    +KL  L  L L  N    +            LK L L
Sbjct: 26  IPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDL 85

Query: 175 KSMLWLEEWTMGAGAMPKLESLILN 199
            S   +   +     + +LE L   
Sbjct: 86  -SFNGVITMSSNFLGLEQLEHLDFQ 109

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 39.7 bits (92), Expect = 6e-04
 Identities = 23/140 (16%), Positives = 51/140 (36%), Gaps = 22/140 (15%)

Query: 38  SSLKNLIFISALHPSSCTPDILSRLPTVQTLRISGDLSHYHSGVSK--SLCELHKLECLK 95
            +    I  +    S       + L ++  +  +      +S +     +  L  +  L 
Sbjct: 18  DAFAETIKDNLKKKSVTDAVTQNELNSIDQIIAN------NSDIKSVQGIQYLPNVTKLF 71

Query: 96  LANQGKMWQITRMILSEYKFPPSLTQLSLSNTELIEDPMPTLEKLPHLEVLKLKQNSYFE 155
           L       ++T +         +L  L L   ++ +  + +L+ L  L+ L L+ N    
Sbjct: 72  LNGN----KLTDI--KPLTNLKNLGWLFLDENKIKD--LSSLKDLKKLKSLSLEHN---- 119

Query: 156 RKLACV-GCSSFPQLKILHL 174
             ++ + G    PQL+ L+L
Sbjct: 120 -GISDINGLVHLPQLESLYL 138

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 39.3 bits (92), Expect = 6e-04
 Identities = 34/155 (21%), Positives = 58/155 (37%), Gaps = 20/155 (12%)

Query: 25  GSITLPAPPKNYS--SSLKNLIFISALHPSSCTPDILSRLPTVQTLRISG-DLSHYHSGV 81
           GSIT P          +L N I I+A   +       + L  + TL   G  ++      
Sbjct: 1   GSITQPTAINVIFPDPALANAIKIAAGKSNVTDTVTQADLDGITTLSAFGTGVTTI---- 56

Query: 82  SKSLCELHKLECLKLANQGKMWQITRMILSEYKFPPSLTQLSLSNTELIEDPMPTLEKLP 141
            + +  L+ L  L+L +     QIT   L+  K    +T+L LS   L    +  +  L 
Sbjct: 57  -EGVQYLNNLIGLELKDN----QITD--LAPLKNLTKITELELSGNPLKN--VSAIAGLQ 107

Query: 142 HLEVLKLKQNSYFERKLACVGCSSFPQLKILHLKS 176
            ++ L L         +     +    L++L+L  
Sbjct: 108 SIKTLDLTSTQI--TDVT--PLAGLSNLQVLYLDL 138

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 39.2 bits (92), Expect = 8e-04
 Identities = 28/115 (24%), Positives = 50/115 (43%), Gaps = 16/115 (13%)

Query: 88  LHKLECLKLANQGKMWQITRMILSEYKFPPSLTQLSLSNTELIEDPMPTLEKLPHLEVLK 147
           + KL  +++A+      IT +       PPSLT+L L   ++ +    +L+ L +L  L 
Sbjct: 170 MKKLSYIRIADT----NITTI---PQGLPPSLTELHLDGNKITKVDAASLKGLNNLAKLG 222

Query: 148 LKQNSYFERKLACVGCSSF---PQLKILHLKSMLWLEEWTMGAGAMPKLESLILN 199
           L  N      ++ V   S    P L+ LHL +   L +   G      ++ + L+
Sbjct: 223 LSFN-----SISAVDNGSLANTPHLRELHLNNNK-LVKVPGGLADHKYIQVVYLH 271

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 39.2 bits (91), Expect = 8e-04
 Identities = 22/111 (19%), Positives = 38/111 (34%), Gaps = 14/111 (12%)

Query: 116 PPSLTQLSLSNTELIEDPMPTLEKLPHLEVLKLKQNSYFERKLACVGCSSFPQLKILHLK 175
           P  L  ++  N +L   P    E    LEVL ++ N     +L  +       L+ L + 
Sbjct: 139 PALLEYINADNNQLTMLP----ELPTSLEVLSVRNN-----QLTFLP-ELPESLEALDVS 188

Query: 176 SMLWLEEWTMGAGAMPKLESLILNPCAY---LRKLPEELWRIKSLCKLELH 223
           + L LE            E   +        +  +PE +  +   C + L 
Sbjct: 189 TNL-LESLPAVPVRNHHSEETEIFFRCRENRITHIPENILSLDPTCTIILE 238

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	252
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	99.94
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	99.91
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	99.91
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	99.89
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	99.88
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	99.88
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	99.87
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	99.86
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	99.86
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	99.86
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	99.86
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	99.86
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	99.86
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	99.86
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	99.85
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	99.85
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	99.85
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	99.85
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	99.84
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	99.84
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	99.84
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	99.84
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	99.84
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	99.84
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	99.84
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	99.84
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	99.83
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	99.83
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	99.83
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	99.83
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	99.83
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	99.82
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	99.82
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	99.82
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	99.82
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	99.82
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	99.81
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	99.81
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	99.81
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	99.81
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	99.81
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	99.8
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	99.8
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	99.8
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	99.8
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	99.8
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	99.8
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	99.8
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	99.8
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	99.8
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	99.8
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	99.79
1o6v_A	466	Internalin A; bacterial infection, extracellular r	99.79
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	99.79
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	99.79
1o6v_A	466	Internalin A; bacterial infection, extracellular r	99.79
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	99.79
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	99.78
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	99.78
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	99.77
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	99.77
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	99.76
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	99.76
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	99.76
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	99.76
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	99.76
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	99.76
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	99.76
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	99.75
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	99.75
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	99.75
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	99.75
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	99.75
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	99.74
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	99.74
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	99.73
3m19_A	251	Variable lymphocyte receptor A diversity region; a	99.73
3m19_A	251	Variable lymphocyte receptor A diversity region; a	99.72
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	99.72
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	99.71
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	99.7
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	99.69
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	99.69
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	99.68
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	99.67
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	99.67
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	99.66
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	99.66
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	99.66
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	99.65
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	99.64
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	99.64
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	99.64
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	99.64
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	99.63
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	99.63
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	99.62
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	99.62
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	99.62
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	99.61
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	99.6
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	99.6
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	99.59
3e6j_A	229	Variable lymphocyte receptor diversity region; var	99.59
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.57
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	99.57
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	99.57
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	99.57
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.53
3e6j_A	229	Variable lymphocyte receptor diversity region; var	99.53
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	99.53
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	99.53
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	99.52
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	99.51
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.48
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	99.48
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.46
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.44
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	99.44
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.41
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	99.41
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	99.38
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	99.38
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	99.38
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	99.32
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	99.31
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	99.31
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	99.27
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	99.27
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	99.26
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	99.24
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	99.24
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	99.22
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	99.18
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	99.08
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	98.95
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	98.95
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	98.94
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	98.93
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	98.9
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	98.88
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	98.88
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	98.88
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	98.81
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	98.79
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	98.7
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	98.62
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	98.57
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	98.56
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	98.29
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	98.16
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	98.12
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	97.83
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	97.82
4fs7_A	394	Uncharacterized protein; leucine-rich repeats, pro	97.71
4fs7_A	394	Uncharacterized protein; leucine-rich repeats, pro	97.66
4gt6_A	394	Cell surface protein; leucine rich repeats, putati	97.39
4h09_A	379	Hypothetical leucine rich repeat protein; two LRR_	96.38
4h09_A	379	Hypothetical leucine rich repeat protein; two LRR_	96.31
4gt6_A	394	Cell surface protein; leucine rich repeats, putati	96.12
1pgv_A	197	TMD-1, tropomodulin TMD-1; structural genomics, PS	95.51
1pgv_A	197	TMD-1, tropomodulin TMD-1; structural genomics, PS	95.32
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	93.89
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	92.96

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=99.94  E-value=3.4e-26  Score=188.91  Aligned_cols=210  Identities=20%  Similarity=0.262  Sum_probs=179.2

Q ss_pred             CCCCccccchHHHhhccccEEEecCCCCCCCCCcccCCCCCCcEecccCCCCC--chhhcCCCCCccEEEeeccCCcccc
Q 036414            2 PSSYIDHSSEDIWMMQKLMHLNFGSITLPAPPKNYSSSLKNLIFISALHPSSC--TPDILSRLPTVQTLRISGDLSHYHS   79 (252)
Q Consensus         2 ~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~~l~~~~~--~~~~l~~l~~L~~L~l~~~~~~~~~   79 (252)
                      .++.++.+|..++++++|++|++++|.+. .+|..+.++++|++|+ ++.+.+  +|..++.+++|++|++++|.  ...
T Consensus        89 ~~n~l~~lp~~l~~l~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~-Ls~n~l~~lp~~l~~l~~L~~L~L~~n~--~~~  164 (328)
T 4fcg_A           89 RSVPLPQFPDQAFRLSHLQHMTIDAAGLM-ELPDTMQQFAGLETLT-LARNPLRALPASIASLNRLRELSIRACP--ELT  164 (328)
T ss_dssp             ESSCCSSCCSCGGGGTTCSEEEEESSCCC-CCCSCGGGGTTCSEEE-EESCCCCCCCGGGGGCTTCCEEEEEEET--TCC
T ss_pred             cCCCchhcChhhhhCCCCCEEECCCCCcc-chhHHHhccCCCCEEE-CCCCccccCcHHHhcCcCCCEEECCCCC--Ccc
Confidence            35778899999999999999999987776 8888899999999999 888877  77789999999999999986  666


Q ss_pred             chhHhhhc---------cCCCCeEEeeeccchhHHHHhhc-cccCCCCCCceEEeeecccCCCCchhhhcCCCCceEEec
Q 036414           80 GVSKSLCE---------LHKLECLKLANQGKMWQITRMIL-SEYKFPPSLTQLSLSNTELIEDPMPTLEKLPHLEVLKLK  149 (252)
Q Consensus        80 ~~~~~l~~---------l~~L~~L~l~~~~~~~~~~~l~~-~~~~~~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~  149 (252)
                      .+|..+..         +++|++|++.+ +.+..    +| .+..+ ++|++|++++|.+. ..+..++.+++|++|+++
T Consensus       165 ~~p~~~~~~~~~~~~~~l~~L~~L~L~~-n~l~~----lp~~l~~l-~~L~~L~L~~N~l~-~l~~~l~~l~~L~~L~Ls  237 (328)
T 4fcg_A          165 ELPEPLASTDASGEHQGLVNLQSLRLEW-TGIRS----LPASIANL-QNLKSLKIRNSPLS-ALGPAIHHLPKLEELDLR  237 (328)
T ss_dssp             CCCSCSEEEC-CCCEEESTTCCEEEEEE-ECCCC----CCGGGGGC-TTCCEEEEESSCCC-CCCGGGGGCTTCCEEECT
T ss_pred             ccChhHhhccchhhhccCCCCCEEECcC-CCcCc----chHhhcCC-CCCCEEEccCCCCC-cCchhhccCCCCCEEECc
Confidence            66666544         89999999999 56656    77 78888 99999999999998 456678899999999999


Q ss_pred             cCCccCceeeecCCCCCccccEEEecCCccccceeccccccccccceeeccCCCCCCChHHHHhccccceeeccc
Q 036414          150 QNSYFERKLACVGCSSFPQLKILHLKSMLWLEEWTMGAGAMPKLESLILNPCAYLRKLPEELWRIKSLCKLELHW  224 (252)
Q Consensus       150 ~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~l~~  224 (252)
                      +|...+.... . ++++++|++|++++|+....++..++.+++|+.|++++|...+.+|..+.++++|+.+.+..
T Consensus       238 ~n~~~~~~p~-~-~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~~L~~L~~l~l~~  310 (328)
T 4fcg_A          238 GCTALRNYPP-I-FGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPP  310 (328)
T ss_dssp             TCTTCCBCCC-C-TTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGGGGGSCTTCEEECCG
T ss_pred             CCcchhhhHH-H-hcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccHHHhhccCceEEeCCH
Confidence            8887664333 4 77899999999999986677888889999999999999999999999999999999988764

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=99.91  E-value=1.4e-23  Score=173.34  Aligned_cols=197  Identities=21%  Similarity=0.307  Sum_probs=171.9

Q ss_pred             hccccEEEecCCCCCCCCCcccCCCCCCcEecccCCCCC--chhhcCCCCCccEEEeeccCCccccchhHhhhccCCCCe
Q 036414           16 MQKLMHLNFGSITLPAPPKNYSSSLKNLIFISALHPSSC--TPDILSRLPTVQTLRISGDLSHYHSGVSKSLCELHKLEC   93 (252)
Q Consensus        16 l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~~l~~~~~--~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~   93 (252)
                      ..+++.|++++|.+. .+|..+..+++|++|+ ++.+.+  +|..++.+++|++|++++|.   ...+|..+..+++|++
T Consensus        80 ~~~l~~L~L~~n~l~-~lp~~l~~l~~L~~L~-L~~n~l~~lp~~~~~l~~L~~L~Ls~n~---l~~lp~~l~~l~~L~~  154 (328)
T 4fcg_A           80 QPGRVALELRSVPLP-QFPDQAFRLSHLQHMT-IDAAGLMELPDTMQQFAGLETLTLARNP---LRALPASIASLNRLRE  154 (328)
T ss_dssp             STTCCEEEEESSCCS-SCCSCGGGGTTCSEEE-EESSCCCCCCSCGGGGTTCSEEEEESCC---CCCCCGGGGGCTTCCE
T ss_pred             ccceeEEEccCCCch-hcChhhhhCCCCCEEE-CCCCCccchhHHHhccCCCCEEECCCCc---cccCcHHHhcCcCCCE
Confidence            378999999977766 7888899999999999 888877  77778999999999999995   4478989999999999


Q ss_pred             EEeeeccchhHHHHhhc-ccc---------CCCCCCceEEeeecccCCCCchhhhcCCCCceEEeccCCccCceeeecCC
Q 036414           94 LKLANQGKMWQITRMIL-SEY---------KFPPSLTQLSLSNTELIEDPMPTLEKLPHLEVLKLKQNSYFERKLACVGC  163 (252)
Q Consensus        94 L~l~~~~~~~~~~~l~~-~~~---------~~~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~  163 (252)
                      |++.+|+..+.    +| .+.         .+ ++|++|++++|.++ ..|..++.+++|++|++++|.+.+..  .. .
T Consensus       155 L~L~~n~~~~~----~p~~~~~~~~~~~~~~l-~~L~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~N~l~~l~--~~-l  225 (328)
T 4fcg_A          155 LSIRACPELTE----LPEPLASTDASGEHQGL-VNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLSALG--PA-I  225 (328)
T ss_dssp             EEEEEETTCCC----CCSCSEEEC-CCCEEES-TTCCEEEEEEECCC-CCCGGGGGCTTCCEEEEESSCCCCCC--GG-G
T ss_pred             EECCCCCCccc----cChhHhhccchhhhccC-CCCCEEECcCCCcC-cchHhhcCCCCCCEEEccCCCCCcCc--hh-h
Confidence            99999665555    66 443         37 99999999999998 67888999999999999999887532  23 6


Q ss_pred             CCCccccEEEecCCccccceeccccccccccceeeccCCCCCCChHHHHhccccceeecccCC
Q 036414          164 SSFPQLKILHLKSMLWLEEWTMGAGAMPKLESLILNPCAYLRKLPEELWRIKSLCKLELHWPQ  226 (252)
Q Consensus       164 ~~~~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~l~~~~  226 (252)
                      +.+++|++|++++|.....++..++.+++|+.|++++|...+.+|..+..+++|++|++++|+
T Consensus       226 ~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~  288 (328)
T 4fcg_A          226 HHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCV  288 (328)
T ss_dssp             GGCTTCCEEECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCT
T ss_pred             ccCCCCCEEECcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCC
Confidence            689999999999999666778888999999999999999988999999999999999999975

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=99.91  E-value=2.4e-24  Score=176.78  Aligned_cols=212  Identities=21%  Similarity=0.234  Sum_probs=170.1

Q ss_pred             CCCcc---ccchHHHhhccccEEEecC-CCCCCCCCcccCCCCCCcEecccCCCCC---chhhcCCCCCccEEEeeccCC
Q 036414            3 SSYID---HSSEDIWMMQKLMHLNFGS-ITLPAPPKNYSSSLKNLIFISALHPSSC---TPDILSRLPTVQTLRISGDLS   75 (252)
Q Consensus         3 ~~~l~---~lp~~i~~l~~L~~L~l~~-~~~~~~~~~~l~~l~~L~~L~~l~~~~~---~~~~l~~l~~L~~L~l~~~~~   75 (252)
                      ++.++   .+|.++.++++|++|++++ |.+...+|..+.++++|++|+ ++.+..   .|..++.+++|++|++++|. 
T Consensus        59 ~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~-Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~-  136 (313)
T 1ogq_A           59 GLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLY-ITHTNVSGAIPDFLSQIKTLVTLDFSYNA-  136 (313)
T ss_dssp             CCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEE-EEEECCEEECCGGGGGCTTCCEEECCSSE-
T ss_pred             CCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEE-CcCCeeCCcCCHHHhCCCCCCEEeCCCCc-
Confidence            34555   6899999999999999994 777778898999999999999 888776   67778899999999999996 


Q ss_pred             ccccchhHhhhccCCCCeEEeeeccch-hHHHHhhc-cccCCCCCCceEEeeecccCCCCchhhhcCCCCceEEeccCCc
Q 036414           76 HYHSGVSKSLCELHKLECLKLANQGKM-WQITRMIL-SEYKFPPSLTQLSLSNTELIEDPMPTLEKLPHLEVLKLKQNSY  153 (252)
Q Consensus        76 ~~~~~~~~~l~~l~~L~~L~l~~~~~~-~~~~~l~~-~~~~~~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~  153 (252)
                       ....+|..+..+++|++|++.+ +.+ +.    +| .+..+.++|++|++++|.+....|..++.+. |+.|++++|.+
T Consensus       137 -l~~~~p~~~~~l~~L~~L~L~~-N~l~~~----~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L~~L~Ls~N~l  209 (313)
T 1ogq_A          137 -LSGTLPPSISSLPNLVGITFDG-NRISGA----IPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRNML  209 (313)
T ss_dssp             -EESCCCGGGGGCTTCCEEECCS-SCCEEE----CCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCC-CSEEECCSSEE
T ss_pred             -cCCcCChHHhcCCCCCeEECcC-CcccCc----CCHHHhhhhhcCcEEECcCCeeeccCChHHhCCc-ccEEECcCCcc
Confidence             5557888889999999999998 444 34    66 7777723899999999988877788887776 99999988877


Q ss_pred             cCceeeecCCCCCccccEEEecCCccccceeccccccccccceeeccCCCCCCChHHHHhccccceeecccCC
Q 036414          154 FERKLACVGCSSFPQLKILHLKSMLWLEEWTMGAGAMPKLESLILNPCAYLRKLPEELWRIKSLCKLELHWPQ  226 (252)
Q Consensus       154 ~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~l~~~~  226 (252)
                      .+.. +.. +..+++|+.|++++|. +.........+++|+.|++++|...+.+|..+..+++|++|+++++.
T Consensus       210 ~~~~-~~~-~~~l~~L~~L~L~~N~-l~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~  279 (313)
T 1ogq_A          210 EGDA-SVL-FGSDKNTQKIHLAKNS-LAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNN  279 (313)
T ss_dssp             EECC-GGG-CCTTSCCSEEECCSSE-ECCBGGGCCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSE
T ss_pred             cCcC-CHH-HhcCCCCCEEECCCCc-eeeecCcccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCc
Confidence            6432 223 6678889999988888 66554446778888889998888776788888888888888888763

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=99.89  E-value=8e-24  Score=173.64  Aligned_cols=205  Identities=14%  Similarity=0.147  Sum_probs=178.7

Q ss_pred             cccchHHHhhccccEEEecCCCCCCCCCcccCCCCCCcEecccCCCCC---chhhcCCCCCccEEEeeccCCccccchhH
Q 036414            7 DHSSEDIWMMQKLMHLNFGSITLPAPPKNYSSSLKNLIFISALHPSSC---TPDILSRLPTVQTLRISGDLSHYHSGVSK   83 (252)
Q Consensus         7 ~~lp~~i~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~~l~~~~~---~~~~l~~l~~L~~L~l~~~~~~~~~~~~~   83 (252)
                      +.+|.+++++++|++|++++|.+....|..+..+++|++|+ ++.+.+   .|..++.+++|++|++++|.  ....+|.
T Consensus        91 ~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~-Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~--l~~~~p~  167 (313)
T 1ogq_A           91 GPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLD-FSYNALSGTLPPSISSLPNLVGITFDGNR--ISGAIPD  167 (313)
T ss_dssp             SCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEE-CCSSEEESCCCGGGGGCTTCCEEECCSSC--CEEECCG
T ss_pred             ccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCEEe-CCCCccCCcCChHHhcCCCCCeEECcCCc--ccCcCCH
Confidence            37899999999999999998888778899999999999999 988875   67789999999999999997  6668899


Q ss_pred             hhhccC-CCCeEEeeeccch-hHHHHhhc-cccCCCCCCceEEeeecccCCCCchhhhcCCCCceEEeccCCccCceeee
Q 036414           84 SLCELH-KLECLKLANQGKM-WQITRMIL-SEYKFPPSLTQLSLSNTELIEDPMPTLEKLPHLEVLKLKQNSYFERKLAC  160 (252)
Q Consensus        84 ~l~~l~-~L~~L~l~~~~~~-~~~~~l~~-~~~~~~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~  160 (252)
                      .+..++ +|++|++.+ +.+ +.    +| .+..+ + |++|++++|.++...+..++.+++|+.|++++|.+...... 
T Consensus       168 ~l~~l~~~L~~L~L~~-N~l~~~----~~~~~~~l-~-L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~-  239 (313)
T 1ogq_A          168 SYGSFSKLFTSMTISR-NRLTGK----IPPTFANL-N-LAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGK-  239 (313)
T ss_dssp             GGGCCCTTCCEEECCS-SEEEEE----CCGGGGGC-C-CSEEECCSSEEEECCGGGCCTTSCCSEEECCSSEECCBGGG-
T ss_pred             HHhhhhhcCcEEECcC-Ceeecc----CChHHhCC-c-ccEEECcCCcccCcCCHHHhcCCCCCEEECCCCceeeecCc-
Confidence            999998 999999999 554 34    56 77776 5 99999999999888889999999999999999988653332 


Q ss_pred             cCCCCCccccEEEecCCcccc-ceeccccccccccceeeccCCCCCCChHHHHhccccceeecccCC
Q 036414          161 VGCSSFPQLKILHLKSMLWLE-EWTMGAGAMPKLESLILNPCAYLRKLPEELWRIKSLCKLELHWPQ  226 (252)
Q Consensus       161 ~~~~~~~~L~~L~l~~~~~l~-~~~~~~~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~l~~~~  226 (252)
                        ...+++|++|++++|. +. .++..++.+++|+.|++++|...+.+|.. ..+++|+.+++.+++
T Consensus       240 --~~~l~~L~~L~Ls~N~-l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~-~~l~~L~~l~l~~N~  302 (313)
T 1ogq_A          240 --VGLSKNLNGLDLRNNR-IYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQG-GNLQRFDVSAYANNK  302 (313)
T ss_dssp             --CCCCTTCCEEECCSSC-CEECCCGGGGGCTTCCEEECCSSEEEEECCCS-TTGGGSCGGGTCSSS
T ss_pred             --ccccCCCCEEECcCCc-ccCcCChHHhcCcCCCEEECcCCcccccCCCC-ccccccChHHhcCCC
Confidence              5578999999999999 76 67888899999999999999987778875 789999999998876

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=99.88  E-value=5.9e-22  Score=160.29  Aligned_cols=210  Identities=17%  Similarity=0.133  Sum_probs=173.0

Q ss_pred             CCCccccchHHHhhccccEEEecCCCCCCCCCcccCCCCCCcEecccCCCCC---chhhcCCCCCccEEEeeccCCcccc
Q 036414            3 SSYIDHSSEDIWMMQKLMHLNFGSITLPAPPKNYSSSLKNLIFISALHPSSC---TPDILSRLPTVQTLRISGDLSHYHS   79 (252)
Q Consensus         3 ~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~~l~~~~~---~~~~l~~l~~L~~L~l~~~~~~~~~   79 (252)
                      ++.++.+|.++  .++|++|++++|.+....+..+..+++|++|+ ++.+..   .+..++.+++|++|++++|.  ...
T Consensus        20 ~~~l~~ip~~~--~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~-l~~n~l~~~~~~~~~~l~~L~~L~l~~n~--~l~   94 (285)
T 1ozn_A           20 QQGLQAVPVGI--PAASQRIFLHGNRISHVPAASFRACRNLTILW-LHSNVLARIDAAAFTGLALLEQLDLSDNA--QLR   94 (285)
T ss_dssp             SSCCSSCCTTC--CTTCSEEECTTSCCCEECTTTTTTCTTCCEEE-CCSSCCCEECTTTTTTCTTCCEEECCSCT--TCC
T ss_pred             cCCcccCCcCC--CCCceEEEeeCCcCCccCHHHcccCCCCCEEE-CCCCccceeCHhhcCCccCCCEEeCCCCC--Ccc
Confidence            46788888754  46899999998887766667789999999999 888876   46678999999999999984  244


Q ss_pred             ch-hHhhhccCCCCeEEeeeccchhHHHHhh-c-cccCCCCCCceEEeeecccCCCCchhhhcCCCCceEEeccCCccCc
Q 036414           80 GV-SKSLCELHKLECLKLANQGKMWQITRMI-L-SEYKFPPSLTQLSLSNTELIEDPMPTLEKLPHLEVLKLKQNSYFER  156 (252)
Q Consensus        80 ~~-~~~l~~l~~L~~L~l~~~~~~~~~~~l~-~-~~~~~~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~  156 (252)
                      .+ +..+..+++|++|++.+ +.+..    + + .+..+ ++|++|++++|.++...+..++.+++|++|++++|.+...
T Consensus        95 ~~~~~~~~~l~~L~~L~l~~-n~l~~----~~~~~~~~l-~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~  168 (285)
T 1ozn_A           95 SVDPATFHGLGRLHTLHLDR-CGLQE----LGPGLFRGL-AALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSV  168 (285)
T ss_dssp             CCCTTTTTTCTTCCEEECTT-SCCCC----CCTTTTTTC-TTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEE
T ss_pred             ccCHHHhcCCcCCCEEECCC-CcCCE----ECHhHhhCC-cCCCEEECCCCcccccCHhHhccCCCccEEECCCCccccc
Confidence            44 67788999999999998 55544    4 3 56777 9999999999999977777789999999999999987643


Q ss_pred             eeeecCCCCCccccEEEecCCccccce-eccccccccccceeeccCCCCCCChHHHHhccccceeecccCC
Q 036414          157 KLACVGCSSFPQLKILHLKSMLWLEEW-TMGAGAMPKLESLILNPCAYLRKLPEELWRIKSLCKLELHWPQ  226 (252)
Q Consensus       157 ~~~~~~~~~~~~L~~L~l~~~~~l~~~-~~~~~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~l~~~~  226 (252)
                      .. .. +..+++|++|++++|. +.++ +..++.+++|+.|++++|...+..+..+..+++|++|++++++
T Consensus       169 ~~-~~-~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~  236 (285)
T 1ozn_A          169 PE-RA-FRGLHSLDRLLLHQNR-VAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNP  236 (285)
T ss_dssp             CT-TT-TTTCTTCCEEECCSSC-CCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSC
T ss_pred             CH-HH-hcCccccCEEECCCCc-ccccCHhHccCcccccEeeCCCCcCCcCCHHHcccCcccCEEeccCCC
Confidence            22 23 6689999999999999 7776 6678889999999999998765445568899999999999865

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=99.88  E-value=3.3e-22  Score=182.37  Aligned_cols=138  Identities=20%  Similarity=0.160  Sum_probs=87.2

Q ss_pred             ccchHHHhhccccEEEecCCCCCCCCCcccCCCCCCcEecccCCCCC---chhhcCCCCCccEEEeeccCCccccchhHh
Q 036414            8 HSSEDIWMMQKLMHLNFGSITLPAPPKNYSSSLKNLIFISALHPSSC---TPDILSRLPTVQTLRISGDLSHYHSGVSKS   84 (252)
Q Consensus         8 ~lp~~i~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~~l~~~~~---~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~   84 (252)
                      .+|..++++++|++|++++|.+....|..+..+++|+.|+ ++.+..   .|..++.+++|++|++++|.  ....+|..
T Consensus       409 ~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~-L~~n~l~~~~p~~~~~l~~L~~L~L~~N~--l~~~~p~~  485 (768)
T 3rgz_A          409 KIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLK-LWLNMLEGEIPQELMYVKTLETLILDFND--LTGEIPSG  485 (768)
T ss_dssp             ECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEE-CCSSCCCSCCCGGGGGCTTCCEEECCSSC--CCSCCCGG
T ss_pred             ccCHHHhcCCCCCEEECcCCcccCcccHHHhcCCCCCEEE-CCCCcccCcCCHHHcCCCCceEEEecCCc--ccCcCCHH
Confidence            5666777777777777776666666676777777777777 666654   55556666777777777665  44456666


Q ss_pred             hhccCCCCeEEeeeccchhHHHHhhc-cccCCCCCCceEEeeecccCCCCchhhhcCCCCceEEeccCCc
Q 036414           85 LCELHKLECLKLANQGKMWQITRMIL-SEYKFPPSLTQLSLSNTELIEDPMPTLEKLPHLEVLKLKQNSY  153 (252)
Q Consensus        85 l~~l~~L~~L~l~~~~~~~~~~~l~~-~~~~~~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~  153 (252)
                      +..+++|++|++.+|.-.+.    +| ++..+ ++|++|++++|.+.+..|..++.+++|+.|++++|.+
T Consensus       486 l~~l~~L~~L~L~~N~l~~~----~p~~~~~l-~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l  550 (768)
T 3rgz_A          486 LSNCTNLNWISLSNNRLTGE----IPKWIGRL-ENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLF  550 (768)
T ss_dssp             GGGCTTCCEEECCSSCCCSC----CCGGGGGC-TTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEE
T ss_pred             HhcCCCCCEEEccCCccCCc----CChHHhcC-CCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCCcc
Confidence            66666777777766322123    45 55555 6666666666666555555666666666666655543

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=99.87  E-value=5.9e-22  Score=180.71  Aligned_cols=207  Identities=18%  Similarity=0.134  Sum_probs=117.1

Q ss_pred             ccchHHHhhccccEEEecCCCCCCCCCcccCCCCCCcEecccCCCCC---chhhcCCCCCccEEEeeccCCccccchhHh
Q 036414            8 HSSEDIWMMQKLMHLNFGSITLPAPPKNYSSSLKNLIFISALHPSSC---TPDILSRLPTVQTLRISGDLSHYHSGVSKS   84 (252)
Q Consensus         8 ~lp~~i~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~~l~~~~~---~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~   84 (252)
                      .+|..++.+++|++|++++|.+...+|..+..+++|++|+ ++.|..   .|..++.+++|++|++++|.  ....+|..
T Consensus       433 ~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~-L~~N~l~~~~p~~l~~l~~L~~L~L~~N~--l~~~~p~~  509 (768)
T 3rgz_A          433 TIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLI-LDFNDLTGEIPSGLSNCTNLNWISLSNNR--LTGEIPKW  509 (768)
T ss_dssp             CCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEE-CCSSCCCSCCCGGGGGCTTCCEEECCSSC--CCSCCCGG
T ss_pred             cccHHHhcCCCCCEEECCCCcccCcCCHHHcCCCCceEEE-ecCCcccCcCCHHHhcCCCCCEEEccCCc--cCCcCChH
Confidence            4566666666777777766666656666666666666666 666554   45556666666666666665  44455666


Q ss_pred             hhccCCCCeEEeeeccchhHHHHhhc-cccCCCCCCceEEeeecccCCCCchhh--------------------------
Q 036414           85 LCELHKLECLKLANQGKMWQITRMIL-SEYKFPPSLTQLSLSNTELIEDPMPTL--------------------------  137 (252)
Q Consensus        85 l~~l~~L~~L~l~~~~~~~~~~~l~~-~~~~~~~~L~~l~l~~~~~~~~~~~~l--------------------------  137 (252)
                      +..+++|++|++.+|.-.+.    +| .+..+ ++|+++++++|.+.+..|..+                          
T Consensus       510 ~~~l~~L~~L~L~~N~l~~~----~p~~l~~l-~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  584 (768)
T 3rgz_A          510 IGRLENLAILKLSNNSFSGN----IPAELGDC-RSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMK  584 (768)
T ss_dssp             GGGCTTCCEEECCSSCCEEE----CCGGGGGC-TTCCEEECCSSEEESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCC
T ss_pred             HhcCCCCCEEECCCCcccCc----CCHHHcCC-CCCCEEECCCCccCCcCChHHhcccchhhhhcccccccccccccccc
Confidence            66666666666666322233    44 45555 566666665555443333221                          


Q ss_pred             --------------------------------------------hcCCCCceEEeccCCccCceeeecCCCCCccccEEE
Q 036414          138 --------------------------------------------EKLPHLEVLKLKQNSYFERKLACVGCSSFPQLKILH  173 (252)
Q Consensus       138 --------------------------------------------~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~  173 (252)
                                                                  +.+++|+.|++++|.+.+..+. . ++.++.|+.|+
T Consensus       585 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~g~ip~-~-l~~l~~L~~L~  662 (768)
T 3rgz_A          585 KECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPK-E-IGSMPYLFILN  662 (768)
T ss_dssp             TTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEECCSSCCBSCCCG-G-GGGCTTCCEEE
T ss_pred             ccccccccccccccccchhhhccccccccccccceecccCchhhhccccccEEECcCCcccccCCH-H-HhccccCCEEe
Confidence                                                        1234455556655555443222 2 44555666666


Q ss_pred             ecCCcccc-ceeccccccccccceeeccCCCCCCChHHHHhccccceeecccC
Q 036414          174 LKSMLWLE-EWTMGAGAMPKLESLILNPCAYLRKLPEELWRIKSLCKLELHWP  225 (252)
Q Consensus       174 l~~~~~l~-~~~~~~~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~l~~~  225 (252)
                      +++|. ++ .+|..++.+++|+.|++++|...+.+|..+..+++|++|+++++
T Consensus       663 Ls~N~-l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ls~N  714 (768)
T 3rgz_A          663 LGHND-ISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNN  714 (768)
T ss_dssp             CCSSC-CCSCCCGGGGGCTTCCEEECCSSCCEECCCGGGGGCCCCSEEECCSS
T ss_pred             CcCCc-cCCCCChHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECcCC
Confidence            66665 43 44555555666666666666555555555555666666665543

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=99.86  E-value=1.1e-21  Score=160.14  Aligned_cols=209  Identities=17%  Similarity=0.122  Sum_probs=111.8

Q ss_pred             CCccccchHHHhhccccEEEecCCCCCCCCCcccCCCCCCcEecccCCCCCc-----hhhcCCCCCccEEEeeccCCccc
Q 036414            4 SYIDHSSEDIWMMQKLMHLNFGSITLPAPPKNYSSSLKNLIFISALHPSSCT-----PDILSRLPTVQTLRISGDLSHYH   78 (252)
Q Consensus         4 ~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~~l~~~~~~-----~~~l~~l~~L~~L~l~~~~~~~~   78 (252)
                      +.++++|..+.  ++|++|++++|.+....+..+.++++|++|+ ++.+...     +..+..+++|++|++++|.   .
T Consensus        17 ~~l~~ip~~~~--~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~-L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~---i   90 (306)
T 2z66_A           17 KGLTSVPTGIP--SSATRLELESNKLQSLPHGVFDKLTQLTKLS-LSSNGLSFKGCCSQSDFGTTSLKYLDLSFNG---V   90 (306)
T ss_dssp             SCCSSCCSCCC--TTCCEEECCSSCCCCCCTTTTTTCTTCSEEE-CCSSCCCEEEEEEHHHHSCSCCCEEECCSCS---E
T ss_pred             CCcccCCCCCC--CCCCEEECCCCccCccCHhHhhccccCCEEE-CCCCccCcccCcccccccccccCEEECCCCc---c
Confidence            34455554332  3555555554444322222245555555555 5544431     2333344555555555542   2


Q ss_pred             cchhHhh-------------------------hccCCCCeEEeeeccchhHHHHhhc-cccCCCCCCceEEeeecccCC-
Q 036414           79 SGVSKSL-------------------------CELHKLECLKLANQGKMWQITRMIL-SEYKFPPSLTQLSLSNTELIE-  131 (252)
Q Consensus        79 ~~~~~~l-------------------------~~l~~L~~L~l~~~~~~~~~~~l~~-~~~~~~~~L~~l~l~~~~~~~-  131 (252)
                      ..++..+                         ..+++|++|++++ +.+...   .+ .+..+ ++|++|++++|.+.+ 
T Consensus        91 ~~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~-n~l~~~---~~~~~~~l-~~L~~L~l~~n~l~~~  165 (306)
T 2z66_A           91 ITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISH-THTRVA---FNGIFNGL-SSLEVLKMAGNSFQEN  165 (306)
T ss_dssp             EEEEEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTT-SCCEEC---STTTTTTC-TTCCEEECTTCEEGGG
T ss_pred             ccChhhcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCC-CcCCcc---chhhcccC-cCCCEEECCCCccccc
Confidence            2333334                         4445555555544 222110   22 34445 666666666665553 


Q ss_pred             CCchhhhcCCCCceEEeccCCccCceeeecCCCCCccccEEEecCCccccceec-cccccccccceeeccCCCCCCChHH
Q 036414          132 DPMPTLEKLPHLEVLKLKQNSYFERKLACVGCSSFPQLKILHLKSMLWLEEWTM-GAGAMPKLESLILNPCAYLRKLPEE  210 (252)
Q Consensus       132 ~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~-~~~~l~~L~~L~l~~~~~~~~~p~~  210 (252)
                      ..+..++.+++|++|++++|.+.... +.. +..+++|++|++++|. +++++. .++.+++|+.|++++|......|..
T Consensus       166 ~~~~~~~~l~~L~~L~Ls~n~l~~~~-~~~-~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~  242 (306)
T 2z66_A          166 FLPDIFTELRNLTFLDLSQCQLEQLS-PTA-FNSLSSLQVLNMSHNN-FFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQE  242 (306)
T ss_dssp             EECSCCTTCTTCCEEECTTSCCCEEC-TTT-TTTCTTCCEEECTTSC-CSBCCSGGGTTCTTCCEEECTTSCCCBCSSSS
T ss_pred             cchhHHhhCcCCCEEECCCCCcCCcC-HHH-hcCCCCCCEEECCCCc-cCccChhhccCcccCCEeECCCCCCcccCHHH
Confidence            34555566666666666666554421 112 4566777777777777 665532 4566777888888877766555656


Q ss_pred             HHhcc-ccceeecccCC
Q 036414          211 LWRIK-SLCKLELHWPQ  226 (252)
Q Consensus       211 l~~l~-~L~~L~l~~~~  226 (252)
                      +..++ +|++|++++++
T Consensus       243 ~~~~~~~L~~L~L~~N~  259 (306)
T 2z66_A          243 LQHFPSSLAFLNLTQND  259 (306)
T ss_dssp             CCCCCTTCCEEECTTCC
T ss_pred             HHhhhccCCEEEccCCC
Confidence            66664 78888887654

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=99.86  E-value=2.6e-22  Score=167.18  Aligned_cols=211  Identities=18%  Similarity=0.175  Sum_probs=136.0

Q ss_pred             CCCccccch-HHHhhccccEEEecCCCCCCCCCcccCCCCCCcEecccCCCCC--chhh-cCCCCCccEEEeeccCCccc
Q 036414            3 SSYIDHSSE-DIWMMQKLMHLNFGSITLPAPPKNYSSSLKNLIFISALHPSSC--TPDI-LSRLPTVQTLRISGDLSHYH   78 (252)
Q Consensus         3 ~~~l~~lp~-~i~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~~l~~~~~--~~~~-l~~l~~L~~L~l~~~~~~~~   78 (252)
                      ++.++.+|. .+.++++|++|++++|.+....+..+.++++|++|+ ++.+..  .+.. ++.+++|++|++++|.   .
T Consensus        61 ~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~-Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~---l  136 (353)
T 2z80_A           61 NNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLD-LSYNYLSNLSSSWFKPLSSLTFLNLLGNP---Y  136 (353)
T ss_dssp             TSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEE-CCSSCCSSCCHHHHTTCTTCSEEECTTCC---C
T ss_pred             CCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEE-CCCCcCCcCCHhHhCCCccCCEEECCCCC---C
Confidence            455566655 466677777777776655544455566777777777 666655  3333 6667777777777663   3


Q ss_pred             cchhH--hhhccCCCCeEEeeeccchhHHHHhhc--cccCCCCCCceEEeeecccCCCCchhhhcCCCCceEEeccCCcc
Q 036414           79 SGVSK--SLCELHKLECLKLANQGKMWQITRMIL--SEYKFPPSLTQLSLSNTELIEDPMPTLEKLPHLEVLKLKQNSYF  154 (252)
Q Consensus        79 ~~~~~--~l~~l~~L~~L~l~~~~~~~~~~~l~~--~~~~~~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~  154 (252)
                      ..++.  .+..+++|++|++.+++.+..    ++  .+..+ ++|++|++++|.+....+..++.+++|++|++++|.+.
T Consensus       137 ~~l~~~~~~~~l~~L~~L~l~~n~~~~~----~~~~~~~~l-~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~  211 (353)
T 2z80_A          137 KTLGETSLFSHLTKLQILRVGNMDTFTK----IQRKDFAGL-TFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHI  211 (353)
T ss_dssp             SSSCSSCSCTTCTTCCEEEEEESSSCCE----ECTTTTTTC-CEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSCST
T ss_pred             cccCchhhhccCCCCcEEECCCCccccc----cCHHHccCC-CCCCEEECCCCCcCccCHHHHhccccCCeecCCCCccc
Confidence            33443  456677777777776433433    32  45555 77777777777766555666677777777777666654


Q ss_pred             CceeeecCCCCCccccEEEecCCccccce--------------------------------eccccccccccceeeccCC
Q 036414          155 ERKLACVGCSSFPQLKILHLKSMLWLEEW--------------------------------TMGAGAMPKLESLILNPCA  202 (252)
Q Consensus       155 ~~~~~~~~~~~~~~L~~L~l~~~~~l~~~--------------------------------~~~~~~l~~L~~L~l~~~~  202 (252)
                      ..... . ...+++|++|++++|. ++.+                                +..++.+++|+.|++++|.
T Consensus       212 ~~~~~-~-~~~~~~L~~L~L~~n~-l~~~~~~~l~~~~~~~~l~~l~L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N~  288 (353)
T 2z80_A          212 LLLEI-F-VDVTSSVECLELRDTD-LDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRNQ  288 (353)
T ss_dssp             THHHH-H-HHHTTTEEEEEEESCB-CTTCCCC------CCCCCCEEEEESCBCCHHHHHHHHHHHHTCTTCCEEECCSSC
T ss_pred             cchhh-h-hhhcccccEEECCCCc-cccccccccccccccchhhccccccccccCcchhhhHHHHhcccCCCEEECCCCC
Confidence            32211 1 2246777777777776 5432                                2224567899999999987


Q ss_pred             CCCCChHHH-HhccccceeecccCC
Q 036414          203 YLRKLPEEL-WRIKSLCKLELHWPQ  226 (252)
Q Consensus       203 ~~~~~p~~l-~~l~~L~~L~l~~~~  226 (252)
                      .. .+|..+ ..+++|++|++++++
T Consensus       289 l~-~i~~~~~~~l~~L~~L~L~~N~  312 (353)
T 2z80_A          289 LK-SVPDGIFDRLTSLQKIWLHTNP  312 (353)
T ss_dssp             CC-CCCTTTTTTCTTCCEEECCSSC
T ss_pred             CC-ccCHHHHhcCCCCCEEEeeCCC
Confidence            65 788764 789999999999875

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=99.86  E-value=2.5e-21  Score=166.48  Aligned_cols=210  Identities=19%  Similarity=0.186  Sum_probs=153.4

Q ss_pred             CCCcccc-chHHHhhccccEEEecCCCCCCCCCcccCCCCCCcEecccCCCCC--chh-hcCCCCCccEEEeeccCCccc
Q 036414            3 SSYIDHS-SEDIWMMQKLMHLNFGSITLPAPPKNYSSSLKNLIFISALHPSSC--TPD-ILSRLPTVQTLRISGDLSHYH   78 (252)
Q Consensus         3 ~~~l~~l-p~~i~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~~l~~~~~--~~~-~l~~l~~L~~L~l~~~~~~~~   78 (252)
                      ++.|+.+ |.++..+++|++|++++|.+....+..+.++++|++|+ ++.+.+  .+. .+..+++|++|++++|.  ..
T Consensus        84 ~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~-L~~n~l~~~~~~~~~~l~~L~~L~L~~N~--l~  160 (452)
T 3zyi_A           84 ENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLE-LFDNWLTVIPSGAFEYLSKLRELWLRNNP--IE  160 (452)
T ss_dssp             SSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEE-CCSSCCSBCCTTTSSSCTTCCEEECCSCC--CC
T ss_pred             CCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEE-CCCCcCCccChhhhcccCCCCEEECCCCC--cc
Confidence            4566666 34577777888888877766655566777778888888 777765  333 36677888888888775  33


Q ss_pred             cchhHhhhccCCCCeEEeeeccchhHHHHhhc--cccCCCCCCceEEeeecccCCCCchhhhcCCCCceEEeccCCccCc
Q 036414           79 SGVSKSLCELHKLECLKLANQGKMWQITRMIL--SEYKFPPSLTQLSLSNTELIEDPMPTLEKLPHLEVLKLKQNSYFER  156 (252)
Q Consensus        79 ~~~~~~l~~l~~L~~L~l~~~~~~~~~~~l~~--~~~~~~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~  156 (252)
                      ...+..+..+++|+.|++.+++.+..    ++  .+..+ ++|++|++++|.+...  ..+..+++|+.|++++|.+...
T Consensus       161 ~~~~~~~~~l~~L~~L~l~~~~~l~~----i~~~~~~~l-~~L~~L~L~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~  233 (452)
T 3zyi_A          161 SIPSYAFNRVPSLMRLDLGELKKLEY----ISEGAFEGL-FNLKYLNLGMCNIKDM--PNLTPLVGLEELEMSGNHFPEI  233 (452)
T ss_dssp             EECTTTTTTCTTCCEEECCCCTTCCE----ECTTTTTTC-TTCCEEECTTSCCSSC--CCCTTCTTCCEEECTTSCCSEE
T ss_pred             eeCHhHHhcCCcccEEeCCCCCCccc----cChhhccCC-CCCCEEECCCCccccc--ccccccccccEEECcCCcCccc
Confidence            33334667778888888877555544    44  46677 8899999998888743  3467788999999988887653


Q ss_pred             eeeecCCCCCccccEEEecCCccccce-eccccccccccceeeccCCCCCCCh-HHHHhccccceeecccCC
Q 036414          157 KLACVGCSSFPQLKILHLKSMLWLEEW-TMGAGAMPKLESLILNPCAYLRKLP-EELWRIKSLCKLELHWPQ  226 (252)
Q Consensus       157 ~~~~~~~~~~~~L~~L~l~~~~~l~~~-~~~~~~l~~L~~L~l~~~~~~~~~p-~~l~~l~~L~~L~l~~~~  226 (252)
                      .. .. +.++++|+.|++++|. ++.+ +..+..+++|+.|++++|... .+| ..+..+++|++|++.+++
T Consensus       234 ~~-~~-~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~N~l~-~~~~~~~~~l~~L~~L~L~~Np  301 (452)
T 3zyi_A          234 RP-GS-FHGLSSLKKLWVMNSQ-VSLIERNAFDGLASLVELNLAHNNLS-SLPHDLFTPLRYLVELHLHHNP  301 (452)
T ss_dssp             CG-GG-GTTCTTCCEEECTTSC-CCEECTTTTTTCTTCCEEECCSSCCS-CCCTTSSTTCTTCCEEECCSSC
T ss_pred             Cc-cc-ccCccCCCEEEeCCCc-CceECHHHhcCCCCCCEEECCCCcCC-ccChHHhccccCCCEEEccCCC
Confidence            32 23 6788999999999998 7766 455788999999999999775 444 445788999999998765

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=99.86  E-value=3.6e-21  Score=162.37  Aligned_cols=85  Identities=19%  Similarity=0.142  Sum_probs=42.4

Q ss_pred             hhhcCCCCceEEeccCCccCceeeecCCCCCccccEEEecCCccccceeccccccccccceeeccCCCCCCChHHHHhcc
Q 036414          136 TLEKLPHLEVLKLKQNSYFERKLACVGCSSFPQLKILHLKSMLWLEEWTMGAGAMPKLESLILNPCAYLRKLPEELWRIK  215 (252)
Q Consensus       136 ~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~~~~~~~~p~~l~~l~  215 (252)
                      .++.+++|++|++++|.+.+... .. +..+++|++|++++|+ ++.++.....+++|+.|++++|... .+|..+..++
T Consensus       243 ~l~~l~~L~~L~Ls~n~l~~~~~-~~-~~~l~~L~~L~L~~n~-l~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~l~  318 (390)
T 3o6n_A          243 WLLNYPGLVEVDLSYNELEKIMY-HP-FVKMQRLERLYISNNR-LVALNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFD  318 (390)
T ss_dssp             GGGGCTTCSEEECCSSCCCEEES-GG-GTTCSSCCEEECCSSC-CCEEECSSSCCTTCCEEECCSSCCC-CCGGGHHHHT
T ss_pred             HHcCCCCccEEECCCCcCCCcCh-hH-ccccccCCEEECCCCc-CcccCcccCCCCCCCEEECCCCcce-ecCccccccC
Confidence            34555566666666555543211 12 3455555555555555 5555444445555555555555432 4444444444


Q ss_pred             ccceeeccc
Q 036414          216 SLCKLELHW  224 (252)
Q Consensus       216 ~L~~L~l~~  224 (252)
                      +|++|++++
T Consensus       319 ~L~~L~L~~  327 (390)
T 3o6n_A          319 RLENLYLDH  327 (390)
T ss_dssp             TCSEEECCS
T ss_pred             cCCEEECCC
Confidence            444444443

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=99.86  E-value=3.1e-21  Score=165.33  Aligned_cols=211  Identities=16%  Similarity=0.125  Sum_probs=151.3

Q ss_pred             CCCccccc-hHHHhhccccEEEecCCCCCCCCCcccCCCCCCcEecccCCCCC--chh-hcCCCCCccEEEeeccCCccc
Q 036414            3 SSYIDHSS-EDIWMMQKLMHLNFGSITLPAPPKNYSSSLKNLIFISALHPSSC--TPD-ILSRLPTVQTLRISGDLSHYH   78 (252)
Q Consensus         3 ~~~l~~lp-~~i~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~~l~~~~~--~~~-~l~~l~~L~~L~l~~~~~~~~   78 (252)
                      ++.++.++ .++..+++|++|++++|.+....+..+.++++|++|+ ++.|.+  ++. .+..+++|++|++++|.  ..
T Consensus        73 ~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~-L~~n~l~~~~~~~~~~l~~L~~L~L~~N~--i~  149 (440)
T 3zyj_A           73 ENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLE-LFDNRLTTIPNGAFVYLSKLKELWLRNNP--IE  149 (440)
T ss_dssp             SCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEE-CCSSCCSSCCTTTSCSCSSCCEEECCSCC--CC
T ss_pred             CCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEE-CCCCcCCeeCHhHhhccccCceeeCCCCc--cc
Confidence            45566664 3567777777777776666555556677777777777 777665  333 46677778888887775  33


Q ss_pred             cchhHhhhccCCCCeEEeeeccchhHHHHhhc--cccCCCCCCceEEeeecccCCCCchhhhcCCCCceEEeccCCccCc
Q 036414           79 SGVSKSLCELHKLECLKLANQGKMWQITRMIL--SEYKFPPSLTQLSLSNTELIEDPMPTLEKLPHLEVLKLKQNSYFER  156 (252)
Q Consensus        79 ~~~~~~l~~l~~L~~L~l~~~~~~~~~~~l~~--~~~~~~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~  156 (252)
                      ...+..+..+++|++|++.+++.+..    ++  .+..+ ++|++|++++|.++.. + .+..+++|+.|++++|.+...
T Consensus       150 ~~~~~~~~~l~~L~~L~l~~~~~l~~----i~~~~~~~l-~~L~~L~L~~n~l~~~-~-~~~~l~~L~~L~Ls~N~l~~~  222 (440)
T 3zyj_A          150 SIPSYAFNRIPSLRRLDLGELKRLSY----ISEGAFEGL-SNLRYLNLAMCNLREI-P-NLTPLIKLDELDLSGNHLSAI  222 (440)
T ss_dssp             EECTTTTTTCTTCCEEECCCCTTCCE----ECTTTTTTC-SSCCEEECTTSCCSSC-C-CCTTCSSCCEEECTTSCCCEE
T ss_pred             ccCHHHhhhCcccCEeCCCCCCCcce----eCcchhhcc-cccCeecCCCCcCccc-c-ccCCCcccCEEECCCCccCcc
Confidence            33334567778888888877555544    44  46667 8889999888888733 3 467788899999988877653


Q ss_pred             eeeecCCCCCccccEEEecCCccccce-eccccccccccceeeccCCCCCCChHHHHhccccceeecccCC
Q 036414          157 KLACVGCSSFPQLKILHLKSMLWLEEW-TMGAGAMPKLESLILNPCAYLRKLPEELWRIKSLCKLELHWPQ  226 (252)
Q Consensus       157 ~~~~~~~~~~~~L~~L~l~~~~~l~~~-~~~~~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~l~~~~  226 (252)
                      .. .. +.++++|+.|++++|. ++.+ +..+..+++|+.|++++|....--+..+..+++|+.|++.+++
T Consensus       223 ~~-~~-~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np  290 (440)
T 3zyj_A          223 RP-GS-FQGLMHLQKLWMIQSQ-IQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHNP  290 (440)
T ss_dssp             CT-TT-TTTCTTCCEEECTTCC-CCEECTTSSTTCTTCCEEECTTSCCCCCCTTTTSSCTTCCEEECCSSC
T ss_pred             Ch-hh-hccCccCCEEECCCCc-eeEEChhhhcCCCCCCEEECCCCCCCccChhHhccccCCCEEEcCCCC
Confidence            22 23 6788999999999998 7776 4457789999999999998764333446788999999998765

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=99.86  E-value=7e-21  Score=160.58  Aligned_cols=213  Identities=20%  Similarity=0.228  Sum_probs=140.7

Q ss_pred             CCCccccch-HHHhhccccEEEecCCCCCCCCCcccCCCCCCcEecccCCCCC--chhh-cCCCCCccEEEeeccCCccc
Q 036414            3 SSYIDHSSE-DIWMMQKLMHLNFGSITLPAPPKNYSSSLKNLIFISALHPSSC--TPDI-LSRLPTVQTLRISGDLSHYH   78 (252)
Q Consensus         3 ~~~l~~lp~-~i~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~~l~~~~~--~~~~-l~~l~~L~~L~l~~~~~~~~   78 (252)
                      ++.++.+|. ++..+++|++|++++|.+....|..+.++++|++|+ ++.+..  ++.. ++.+++|++|++++|.  ..
T Consensus        78 ~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~-L~~n~l~~l~~~~~~~l~~L~~L~L~~n~--l~  154 (390)
T 3o6n_A           78 DLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLV-LERNDLSSLPRGIFHNTPKLTTLSMSNNN--LE  154 (390)
T ss_dssp             TSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE-CCSSCCCCCCTTTTTTCTTCCEEECCSSC--CC
T ss_pred             CCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEEE-CCCCccCcCCHHHhcCCCCCcEEECCCCc--cC
Confidence            344555543 455555666666665555444455566666666666 665554  3333 3566677777776664  33


Q ss_pred             cchhHhhhccCCCCeEEeeeccch-----hHHHHh---------------------------------------------
Q 036414           79 SGVSKSLCELHKLECLKLANQGKM-----WQITRM---------------------------------------------  108 (252)
Q Consensus        79 ~~~~~~l~~l~~L~~L~l~~~~~~-----~~~~~l---------------------------------------------  108 (252)
                      ...+..+..+++|++|++.++ .+     ..+.++                                             
T Consensus       155 ~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~l~~L~~L~l~~n~l~~~~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~l  233 (390)
T 3o6n_A          155 RIEDDTFQATTSLQNLQLSSN-RLTHVDLSLIPSLFHANVSYNLLSTLAIPIAVEELDASHNSINVVRGPVNVELTILKL  233 (390)
T ss_dssp             BCCTTTTSSCTTCCEEECCSS-CCSBCCGGGCTTCSEEECCSSCCSEEECCSSCSEEECCSSCCCEEECCCCSSCCEEEC
T ss_pred             ccChhhccCCCCCCEEECCCC-cCCccccccccccceeecccccccccCCCCcceEEECCCCeeeeccccccccccEEEC
Confidence            333445667777777777763 22     110000                                             


Q ss_pred             -------hccccCCCCCCceEEeeecccCCCCchhhhcCCCCceEEeccCCccCceeeecCCCCCccccEEEecCCcccc
Q 036414          109 -------ILSEYKFPPSLTQLSLSNTELIEDPMPTLEKLPHLEVLKLKQNSYFERKLACVGCSSFPQLKILHLKSMLWLE  181 (252)
Q Consensus       109 -------~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~  181 (252)
                             .+++..+ ++|++|++++|.+....+..++.+++|+.|++++|.+..  ++.. ...+++|++|++++|+ ++
T Consensus       234 ~~n~l~~~~~l~~l-~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~--~~~~-~~~l~~L~~L~L~~n~-l~  308 (390)
T 3o6n_A          234 QHNNLTDTAWLLNY-PGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVA--LNLY-GQPIPTLKVLDLSHNH-LL  308 (390)
T ss_dssp             CSSCCCCCGGGGGC-TTCSEEECCSSCCCEEESGGGTTCSSCCEEECCSSCCCE--EECS-SSCCTTCCEEECCSSC-CC
T ss_pred             CCCCCcccHHHcCC-CCccEEECCCCcCCCcChhHccccccCCEEECCCCcCcc--cCcc-cCCCCCCCEEECCCCc-ce
Confidence                   0123444 678888888887776667888889999999998888765  3333 5678899999999998 88


Q ss_pred             ceeccccccccccceeeccCCCCCCChHHHHhccccceeecccCCH
Q 036414          182 EWTMGAGAMPKLESLILNPCAYLRKLPEELWRIKSLCKLELHWPQP  227 (252)
Q Consensus       182 ~~~~~~~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~l~~~~~  227 (252)
                      .++...+.+++|+.|++++|... .++  +..+++|++|++++++.
T Consensus       309 ~~~~~~~~l~~L~~L~L~~N~i~-~~~--~~~~~~L~~L~l~~N~~  351 (390)
T 3o6n_A          309 HVERNQPQFDRLENLYLDHNSIV-TLK--LSTHHTLKNLTLSHNDW  351 (390)
T ss_dssp             CCGGGHHHHTTCSEEECCSSCCC-CCC--CCTTCCCSEEECCSSCE
T ss_pred             ecCccccccCcCCEEECCCCccc-eeC--chhhccCCEEEcCCCCc
Confidence            88777788899999999998764 444  56788999999988874

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=99.86  E-value=9.8e-21  Score=163.70  Aligned_cols=213  Identities=20%  Similarity=0.222  Sum_probs=152.1

Q ss_pred             CCCCccccc-hHHHhhccccEEEecCCCCCCCCCcccCCCCCCcEecccCCCCC--chh-hcCCCCCccEEEeeccCCcc
Q 036414            2 PSSYIDHSS-EDIWMMQKLMHLNFGSITLPAPPKNYSSSLKNLIFISALHPSSC--TPD-ILSRLPTVQTLRISGDLSHY   77 (252)
Q Consensus         2 ~~~~l~~lp-~~i~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~~l~~~~~--~~~-~l~~l~~L~~L~l~~~~~~~   77 (252)
                      .++.++.++ ..+.++++|++|++++|.+....|..+.++++|++|+ ++.+..  ++. .++.+++|++|++++|.  .
T Consensus        40 ~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~-L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~--i  116 (477)
T 2id5_A           40 GKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLG-LRSNRLKLIPLGVFTGLSNLTKLDISENK--I  116 (477)
T ss_dssp             CSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEE-CCSSCCCSCCTTSSTTCTTCCEEECTTSC--C
T ss_pred             CCCccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEE-CCCCcCCccCcccccCCCCCCEEECCCCc--c
Confidence            356777774 4688888899999987777666677888888999998 887766  443 36788899999998886  5


Q ss_pred             ccchhHhhhccCCCCeEEeeeccchhHHHHhhc-cccCCCCCCceEEeeecccCCCCchhhhcCCCCceEEeccCCccCc
Q 036414           78 HSGVSKSLCELHKLECLKLANQGKMWQITRMIL-SEYKFPPSLTQLSLSNTELIEDPMPTLEKLPHLEVLKLKQNSYFER  156 (252)
Q Consensus        78 ~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~l~~-~~~~~~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~  156 (252)
                      ....+..+..+++|++|++.+ +.+..+   .+ .+..+ ++|+.|++++|.++...+..+..+++|+.|++++|.+...
T Consensus       117 ~~~~~~~~~~l~~L~~L~l~~-n~l~~~---~~~~~~~l-~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~  191 (477)
T 2id5_A          117 VILLDYMFQDLYNLKSLEVGD-NDLVYI---SHRAFSGL-NSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAI  191 (477)
T ss_dssp             CEECTTTTTTCTTCCEEEECC-TTCCEE---CTTSSTTC-TTCCEEEEESCCCSSCCHHHHTTCTTCCEEEEESCCCCEE
T ss_pred             ccCChhHccccccCCEEECCC-Ccccee---ChhhccCC-CCCCEEECCCCcCcccChhHhcccCCCcEEeCCCCcCcEe
Confidence            555567788889999999988 444330   23 66777 8999999999988877777788899999999988877543


Q ss_pred             eeeecCCCCCccccEEEecCCccccceeccccccccccceeeccCCCCCCCh-HHHHhccccceeecccC
Q 036414          157 KLACVGCSSFPQLKILHLKSMLWLEEWTMGAGAMPKLESLILNPCAYLRKLP-EELWRIKSLCKLELHWP  225 (252)
Q Consensus       157 ~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~~~~~~~~p-~~l~~l~~L~~L~l~~~  225 (252)
                      .. .. +..+++|+.|++++|+.+..++.......+|+.|++++|... .+| ..+..+++|++|+++++
T Consensus       192 ~~-~~-~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~Ls~n  258 (477)
T 2id5_A          192 RD-YS-FKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLT-AVPYLAVRHLVYLRFLNLSYN  258 (477)
T ss_dssp             CT-TC-SCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESSCCC-SCCHHHHTTCTTCCEEECCSS
T ss_pred             Ch-hh-cccCcccceeeCCCCccccccCcccccCccccEEECcCCccc-ccCHHHhcCccccCeeECCCC
Confidence            22 23 567778888888877755555554444456666666666543 344 34555666666666654

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=99.85  E-value=7.4e-22  Score=161.23  Aligned_cols=183  Identities=18%  Similarity=0.182  Sum_probs=135.6

Q ss_pred             hHHHhhccccEEEecCCCCCCCCCcccCCCCCCcEecccCCCCC--ch--hhcCCCCCccEEEeeccCCccccchhHhhh
Q 036414           11 EDIWMMQKLMHLNFGSITLPAPPKNYSSSLKNLIFISALHPSSC--TP--DILSRLPTVQTLRISGDLSHYHSGVSKSLC   86 (252)
Q Consensus        11 ~~i~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~~l~~~~~--~~--~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~   86 (252)
                      ..+..+++|++|++++|.+. .+|..+..+++|++|+ ++.+..  .+  ..+..+++|++|++++|.  .....+..+.
T Consensus        72 ~~~~~~~~L~~L~Ls~n~i~-~l~~~~~~l~~L~~L~-l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~--l~~~~~~~~~  147 (306)
T 2z66_A           72 QSDFGTTSLKYLDLSFNGVI-TMSSNFLGLEQLEHLD-FQHSNLKQMSEFSVFLSLRNLIYLDISHTH--TRVAFNGIFN  147 (306)
T ss_dssp             HHHHSCSCCCEEECCSCSEE-EEEEEEETCTTCCEEE-CTTSEEESSTTTTTTTTCTTCCEEECTTSC--CEECSTTTTT
T ss_pred             cccccccccCEEECCCCccc-cChhhcCCCCCCCEEE-CCCCcccccccchhhhhccCCCEEECCCCc--CCccchhhcc
Confidence            33334444444444433322 3445567777788887 777655  22  357788899999998886  5556677788


Q ss_pred             ccCCCCeEEeeeccch-hHHHHhhc-cccCCCCCCceEEeeecccCCCCchhhhcCCCCceEEeccCCccCceeeecCCC
Q 036414           87 ELHKLECLKLANQGKM-WQITRMIL-SEYKFPPSLTQLSLSNTELIEDPMPTLEKLPHLEVLKLKQNSYFERKLACVGCS  164 (252)
Q Consensus        87 ~l~~L~~L~l~~~~~~-~~~~~l~~-~~~~~~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~  164 (252)
                      .+++|++|++.+ +.+ ...   +| .+..+ ++|++|++++|.++...+..++.+++|++|++++|.+...... . ..
T Consensus       148 ~l~~L~~L~l~~-n~l~~~~---~~~~~~~l-~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~-~-~~  220 (306)
T 2z66_A          148 GLSSLEVLKMAG-NSFQENF---LPDIFTEL-RNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTF-P-YK  220 (306)
T ss_dssp             TCTTCCEEECTT-CEEGGGE---ECSCCTTC-TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBCCSG-G-GT
T ss_pred             cCcCCCEEECCC-Ccccccc---chhHHhhC-cCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCccChh-h-cc
Confidence            999999999998 444 311   46 67787 9999999999999877788899999999999999988663322 3 56


Q ss_pred             CCccccEEEecCCccccce-eccccccc-cccceeeccCCCCC
Q 036414          165 SFPQLKILHLKSMLWLEEW-TMGAGAMP-KLESLILNPCAYLR  205 (252)
Q Consensus       165 ~~~~L~~L~l~~~~~l~~~-~~~~~~l~-~L~~L~l~~~~~~~  205 (252)
                      .+++|++|++++|+ +.+. +..+..++ +|+.|++++|+...
T Consensus       221 ~l~~L~~L~L~~N~-l~~~~~~~~~~~~~~L~~L~L~~N~~~~  262 (306)
T 2z66_A          221 CLNSLQVLDYSLNH-IMTSKKQELQHFPSSLAFLNLTQNDFAC  262 (306)
T ss_dssp             TCTTCCEEECTTSC-CCBCSSSSCCCCCTTCCEEECTTCCEEC
T ss_pred             CcccCCEeECCCCC-CcccCHHHHHhhhccCCEEEccCCCeec
Confidence            89999999999999 7654 55667774 89999999998654

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.85  E-value=1.4e-20  Score=167.04  Aligned_cols=86  Identities=19%  Similarity=0.141  Sum_probs=44.2

Q ss_pred             hhhhcCCCCceEEeccCCccCceeeecCCCCCccccEEEecCCccccceeccccccccccceeeccCCCCCCChHHHHhc
Q 036414          135 PTLEKLPHLEVLKLKQNSYFERKLACVGCSSFPQLKILHLKSMLWLEEWTMGAGAMPKLESLILNPCAYLRKLPEELWRI  214 (252)
Q Consensus       135 ~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~~~~~~~~p~~l~~l  214 (252)
                      ..++.+++|+.|++++|.+.+... .. ++.+++|+.|++++|. ++.++...+.+++|+.|++++|... .+|..+..+
T Consensus       248 ~~l~~l~~L~~L~Ls~N~l~~~~~-~~-~~~l~~L~~L~Ls~N~-l~~l~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~l  323 (597)
T 3oja_B          248 AWLLNYPGLVEVDLSYNELEKIMY-HP-FVKMQRLERLYISNNR-LVALNLYGQPIPTLKVLDLSHNHLL-HVERNQPQF  323 (597)
T ss_dssp             GGGGGCTTCSEEECCSSCCCEEES-GG-GTTCSSCCEEECTTSC-CCEEECSSSCCTTCCEEECCSSCCC-CCGGGHHHH
T ss_pred             hhhccCCCCCEEECCCCccCCCCH-HH-hcCccCCCEEECCCCC-CCCCCcccccCCCCcEEECCCCCCC-ccCcccccC
Confidence            334555566666665555543221 12 4455556666666555 5555554555555666666555543 455444444


Q ss_pred             cccceeeccc
Q 036414          215 KSLCKLELHW  224 (252)
Q Consensus       215 ~~L~~L~l~~  224 (252)
                      ++|+.|++++
T Consensus       324 ~~L~~L~L~~  333 (597)
T 3oja_B          324 DRLENLYLDH  333 (597)
T ss_dssp             TTCSEEECCS
T ss_pred             CCCCEEECCC
Confidence            4444444443

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=99.85  E-value=7.3e-22  Score=176.52  Aligned_cols=207  Identities=17%  Similarity=0.158  Sum_probs=132.1

Q ss_pred             CCccccchHHHhhccccEEEecCCCCCCC-----------------CCcccC--CCCCCcEecccCCCCC---chhhcCC
Q 036414            4 SYIDHSSEDIWMMQKLMHLNFGSITLPAP-----------------PKNYSS--SLKNLIFISALHPSSC---TPDILSR   61 (252)
Q Consensus         4 ~~l~~lp~~i~~l~~L~~L~l~~~~~~~~-----------------~~~~l~--~l~~L~~L~~l~~~~~---~~~~l~~   61 (252)
                      +.++.+|.+++++++|++|++++|.+...                 +|..+.  ++++|++|+ ++.+..   .|..+++
T Consensus       193 n~l~~ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~-L~~n~l~~~~p~~l~~  271 (636)
T 4eco_A          193 NNITFVSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVE-VYNCPNLTKLPTFLKA  271 (636)
T ss_dssp             CEEEEECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEE-EECCTTCSSCCTTTTT
T ss_pred             CCCccCCHHHhcccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEE-ecCCcCCccChHHHhc
Confidence            46667899999999999999998876654                 888888  999999999 887765   7778889


Q ss_pred             CCCccEEEeeccCCcccc--chhHhhhcc------CCCCeEEeeeccchhHHHHhhcc---ccCCCCCCceEEeeecccC
Q 036414           62 LPTVQTLRISGDLSHYHS--GVSKSLCEL------HKLECLKLANQGKMWQITRMILS---EYKFPPSLTQLSLSNTELI  130 (252)
Q Consensus        62 l~~L~~L~l~~~~~~~~~--~~~~~l~~l------~~L~~L~l~~~~~~~~~~~l~~~---~~~~~~~L~~l~l~~~~~~  130 (252)
                      +++|++|++++|.  ...  .+|..+..+      ++|++|++.+ +.+..    +|.   +..+ ++|++|++++|.+.
T Consensus       272 l~~L~~L~Ls~n~--~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~-n~l~~----ip~~~~l~~l-~~L~~L~L~~N~l~  343 (636)
T 4eco_A          272 LPEMQLINVACNR--GISGEQLKDDWQALADAPVGEKIQIIYIGY-NNLKT----FPVETSLQKM-KKLGMLECLYNQLE  343 (636)
T ss_dssp             CSSCCEEECTTCT--TSCHHHHHHHHHHHHHSGGGGTCCEEECCS-SCCSS----CCCHHHHTTC-TTCCEEECCSCCCE
T ss_pred             CCCCCEEECcCCC--CCccccchHHHHhhhccccCCCCCEEECCC-CcCCc----cCchhhhccC-CCCCEEeCcCCcCc
Confidence            9999999998883  133  577777665      7888888887 44434    453   5555 67777777666665


Q ss_pred             CCCchhhhcCCCCceEEeccCCccCceeeecCCCCCcc-ccEEEecCCccccceecc-----------------------
Q 036414          131 EDPMPTLEKLPHLEVLKLKQNSYFERKLACVGCSSFPQ-LKILHLKSMLWLEEWTMG-----------------------  186 (252)
Q Consensus       131 ~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~-L~~L~l~~~~~l~~~~~~-----------------------  186 (252)
                      +..| .++.+++|+.|++++|.+.  .++.. ...+++ |++|++++|. ++.+|..                       
T Consensus       344 g~ip-~~~~l~~L~~L~L~~N~l~--~lp~~-l~~l~~~L~~L~Ls~N~-l~~lp~~~~~~~l~~L~~L~Ls~N~l~~~~  418 (636)
T 4eco_A          344 GKLP-AFGSEIKLASLNLAYNQIT--EIPAN-FCGFTEQVENLSFAHNK-LKYIPNIFDAKSVSVMSAIDFSYNEIGSVD  418 (636)
T ss_dssp             EECC-CCEEEEEESEEECCSSEEE--ECCTT-SEEECTTCCEEECCSSC-CSSCCSCCCTTCSSCEEEEECCSSCTTTTT
T ss_pred             cchh-hhCCCCCCCEEECCCCccc--cccHh-hhhhcccCcEEEccCCc-CcccchhhhhcccCccCEEECcCCcCCCcc
Confidence            3344 4455555555555554443  12212 333444 4444444444 3333332                       


Q ss_pred             ---cc-------ccccccceeeccCCCCCCChHHH-HhccccceeecccC
Q 036414          187 ---AG-------AMPKLESLILNPCAYLRKLPEEL-WRIKSLCKLELHWP  225 (252)
Q Consensus       187 ---~~-------~l~~L~~L~l~~~~~~~~~p~~l-~~l~~L~~L~l~~~  225 (252)
                         ++       .+++|+.|++++|... .+|..+ ..+++|++|+++++
T Consensus       419 p~~l~~~~~~~~~~~~L~~L~Ls~N~l~-~lp~~~~~~l~~L~~L~Ls~N  467 (636)
T 4eco_A          419 GKNFDPLDPTPFKGINVSSINLSNNQIS-KFPKELFSTGSPLSSINLMGN  467 (636)
T ss_dssp             TCSSCTTCSSCCCCCCEEEEECCSSCCC-SCCTHHHHTTCCCSEEECCSS
T ss_pred             hhhhcccccccccCCCCCEEECcCCccC-cCCHHHHccCCCCCEEECCCC
Confidence               22       3445666666665544 455443 34666666666655

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=99.85  E-value=1.9e-20  Score=154.46  Aligned_cols=206  Identities=18%  Similarity=0.165  Sum_probs=106.9

Q ss_pred             CCCccccch-HHHhhccccEEEecCCCCCCCCCcccCCCCCCcEecccCCCCC--chhhcCCCCCccEEEeeccCCcccc
Q 036414            3 SSYIDHSSE-DIWMMQKLMHLNFGSITLPAPPKNYSSSLKNLIFISALHPSSC--TPDILSRLPTVQTLRISGDLSHYHS   79 (252)
Q Consensus         3 ~~~l~~lp~-~i~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~~l~~~~~--~~~~l~~l~~L~~L~l~~~~~~~~~   79 (252)
                      ++.++.+|. .+.++++|++|++++|.+....|..+..+++|++|+ ++.+..  ++..+.  ++|++|++++|.  ...
T Consensus        61 ~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~-Ls~n~l~~l~~~~~--~~L~~L~l~~n~--l~~  135 (330)
T 1xku_A           61 NNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLY-LSKNQLKELPEKMP--KTLQELRVHENE--ITK  135 (330)
T ss_dssp             SSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEE-CCSSCCSBCCSSCC--TTCCEEECCSSC--CCB
T ss_pred             CCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEE-CCCCcCCccChhhc--ccccEEECCCCc--ccc
Confidence            456666665 567777777777776666655567777777777777 766655  333332  566666666664  333


Q ss_pred             chhHhhhccCCCCeEEeeeccchh--HHHHhhc-cccCCCCCCceEEeeecccCCCCchhhhcCCCCceEEeccCCccCc
Q 036414           80 GVSKSLCELHKLECLKLANQGKMW--QITRMIL-SEYKFPPSLTQLSLSNTELIEDPMPTLEKLPHLEVLKLKQNSYFER  156 (252)
Q Consensus        80 ~~~~~l~~l~~L~~L~l~~~~~~~--~~~~l~~-~~~~~~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~  156 (252)
                      ..+..+..+++|+.|++.++ .+.  ..   .+ .+..+ ++|++|++++|.++. .+..+  .++|++|++++|.+...
T Consensus       136 ~~~~~~~~l~~L~~L~l~~n-~l~~~~~---~~~~~~~l-~~L~~L~l~~n~l~~-l~~~~--~~~L~~L~l~~n~l~~~  207 (330)
T 1xku_A          136 VRKSVFNGLNQMIVVELGTN-PLKSSGI---ENGAFQGM-KKLSYIRIADTNITT-IPQGL--PPSLTELHLDGNKITKV  207 (330)
T ss_dssp             BCHHHHTTCTTCCEEECCSS-CCCGGGB---CTTGGGGC-TTCCEEECCSSCCCS-CCSSC--CTTCSEEECTTSCCCEE
T ss_pred             cCHhHhcCCccccEEECCCC-cCCccCc---ChhhccCC-CCcCEEECCCCcccc-CCccc--cccCCEEECCCCcCCcc
Confidence            33445666777777777663 221  10   12 34444 555555555555442 22111  14445555544443322


Q ss_pred             eeeecCCCCCccccEEEecCCccccceec-cccccccccceeeccCCCCCCChHHHHhccccceeecccC
Q 036414          157 KLACVGCSSFPQLKILHLKSMLWLEEWTM-GAGAMPKLESLILNPCAYLRKLPEELWRIKSLCKLELHWP  225 (252)
Q Consensus       157 ~~~~~~~~~~~~L~~L~l~~~~~l~~~~~-~~~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~l~~~  225 (252)
                      .. .. +..+++|++|++++|. ++.++. .++.+++|+.|++++|... .+|.++..+++|++|+++++
T Consensus       208 ~~-~~-~~~l~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N  273 (330)
T 1xku_A          208 DA-AS-LKGLNNLAKLGLSFNS-ISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNN  273 (330)
T ss_dssp             CT-GG-GTTCTTCCEEECCSSC-CCEECTTTGGGSTTCCEEECCSSCCS-SCCTTTTTCSSCCEEECCSS
T ss_pred             CH-HH-hcCCCCCCEEECCCCc-CceeChhhccCCCCCCEEECCCCcCc-cCChhhccCCCcCEEECCCC
Confidence            11 11 3344555555555554 444322 3344455555555554432 44444444555555555443

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=99.84  E-value=2.7e-20  Score=160.92  Aligned_cols=217  Identities=17%  Similarity=0.115  Sum_probs=158.9

Q ss_pred             CCCCccccchH-HHhhccccEEEecCCCCCCCCCcccCCCCCCcEecccCCCCC---chhhcCCCCCccEEEeeccCCcc
Q 036414            2 PSSYIDHSSED-IWMMQKLMHLNFGSITLPAPPKNYSSSLKNLIFISALHPSSC---TPDILSRLPTVQTLRISGDLSHY   77 (252)
Q Consensus         2 ~~~~l~~lp~~-i~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~~l~~~~~---~~~~l~~l~~L~~L~l~~~~~~~   77 (252)
                      .++.++.+|.. +..+++|++|++++|.+....+..+.++++|++|+ ++.+..   .+..+..+++|++|++++|.  .
T Consensus        88 ~~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~-l~~n~l~~~~~~~~~~l~~L~~L~l~~n~--l  164 (477)
T 2id5_A           88 RSNRLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLE-VGDNDLVYISHRAFSGLNSLEQLTLEKCN--L  164 (477)
T ss_dssp             CSSCCCSCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEE-ECCTTCCEECTTSSTTCTTCCEEEEESCC--C
T ss_pred             CCCcCCccCcccccCCCCCCEEECCCCccccCChhHccccccCCEEE-CCCCccceeChhhccCCCCCCEEECCCCc--C
Confidence            45778888875 68899999999998887777777888899999999 887766   45567788888888888885  3


Q ss_pred             ccchhHhhhccCCCCeEEeeeccchhHH--------HHh-------------hc-cccCCCCCCceEEeeecccCCCCch
Q 036414           78 HSGVSKSLCELHKLECLKLANQGKMWQI--------TRM-------------IL-SEYKFPPSLTQLSLSNTELIEDPMP  135 (252)
Q Consensus        78 ~~~~~~~l~~l~~L~~L~l~~~~~~~~~--------~~l-------------~~-~~~~~~~~L~~l~l~~~~~~~~~~~  135 (252)
                      ....+..+..+++|+.|++.+ +.+..+        .+|             ++ ..... .+|++|++++|.++...+.
T Consensus       165 ~~~~~~~l~~l~~L~~L~l~~-n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~-~~L~~L~l~~n~l~~~~~~  242 (477)
T 2id5_A          165 TSIPTEALSHLHGLIVLRLRH-LNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYG-LNLTSLSITHCNLTAVPYL  242 (477)
T ss_dssp             SSCCHHHHTTCTTCCEEEEES-CCCCEECTTCSCSCTTCCEEEEECCTTCCEECTTTTTT-CCCSEEEEESSCCCSCCHH
T ss_pred             cccChhHhcccCCCcEEeCCC-CcCcEeChhhcccCcccceeeCCCCccccccCcccccC-ccccEEECcCCcccccCHH
Confidence            333344566777777777766 222110        000             22 22223 4777777777877765667


Q ss_pred             hhhcCCCCceEEeccCCccCceeeecCCCCCccccEEEecCCccccce-eccccccccccceeeccCCCCCCChHHHHhc
Q 036414          136 TLEKLPHLEVLKLKQNSYFERKLACVGCSSFPQLKILHLKSMLWLEEW-TMGAGAMPKLESLILNPCAYLRKLPEELWRI  214 (252)
Q Consensus       136 ~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~-~~~~~~l~~L~~L~l~~~~~~~~~p~~l~~l  214 (252)
                      .+..+++|+.|++++|.+..... .. +.++++|+.|++++|. +..+ +..+..+++|+.|++++|....--+..+..+
T Consensus       243 ~~~~l~~L~~L~Ls~n~l~~~~~-~~-~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l  319 (477)
T 2id5_A          243 AVRHLVYLRFLNLSYNPISTIEG-SM-LHELLRLQEIQLVGGQ-LAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSV  319 (477)
T ss_dssp             HHTTCTTCCEEECCSSCCCEECT-TS-CTTCTTCCEEECCSSC-CSEECTTTBTTCTTCCEEECCSSCCSCCCGGGBSCG
T ss_pred             HhcCccccCeeECCCCcCCccCh-hh-ccccccCCEEECCCCc-cceECHHHhcCcccCCEEECCCCcCceeCHhHcCCC
Confidence            78889999999999888764322 23 6788999999999998 7776 5567889999999999998754333445788


Q ss_pred             cccceeecccCC
Q 036414          215 KSLCKLELHWPQ  226 (252)
Q Consensus       215 ~~L~~L~l~~~~  226 (252)
                      ++|++|++.+++
T Consensus       320 ~~L~~L~l~~N~  331 (477)
T 2id5_A          320 GNLETLILDSNP  331 (477)
T ss_dssp             GGCCEEECCSSC
T ss_pred             cccCEEEccCCC
Confidence            999999998775

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=99.84  E-value=1.1e-20  Score=152.16  Aligned_cols=208  Identities=17%  Similarity=0.119  Sum_probs=163.7

Q ss_pred             CCCccccchHHHhhccccEEEecCCCCCCCCCcccCCCCCCcEecccCCCCC---chhhcCCCCCccEEEeeccCCcccc
Q 036414            3 SSYIDHSSEDIWMMQKLMHLNFGSITLPAPPKNYSSSLKNLIFISALHPSSC---TPDILSRLPTVQTLRISGDLSHYHS   79 (252)
Q Consensus         3 ~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~~l~~~~~---~~~~l~~l~~L~~L~l~~~~~~~~~   79 (252)
                      +..+.++|..+.  ++|++|++++|.+....+..+.++++|++|+ ++.+..   .+..+..+++|++|++++|.  ...
T Consensus        16 ~~~l~~ip~~l~--~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~-l~~n~l~~~~~~~~~~l~~L~~L~L~~n~--l~~   90 (276)
T 2z62_A           16 ELNFYKIPDNLP--FSTKNLDLSFNPLRHLGSYSFFSFPELQVLD-LSRCEIQTIEDGAYQSLSHLSTLILTGNP--IQS   90 (276)
T ss_dssp             TSCCSSCCSSSC--TTCCEEECTTCCCCEECTTTTTTCTTCSEEE-CTTCCCCEECTTTTTTCTTCCEEECTTCC--CCE
T ss_pred             CCCccccCCCCC--CCccEEECCCCcccccCHhHhccccCCcEEE-CCCCcCCccCHHHccCCcCCCEEECCCCc--cCc
Confidence            355677887654  5799999998887766666889999999999 988876   34458889999999999996  555


Q ss_pred             chhHhhhccCCCCeEEeeeccchhHHHHhhc--cccCCCCCCceEEeeecccCCC-CchhhhcCCCCceEEeccCCccCc
Q 036414           80 GVSKSLCELHKLECLKLANQGKMWQITRMIL--SEYKFPPSLTQLSLSNTELIED-PMPTLEKLPHLEVLKLKQNSYFER  156 (252)
Q Consensus        80 ~~~~~l~~l~~L~~L~l~~~~~~~~~~~l~~--~~~~~~~~L~~l~l~~~~~~~~-~~~~l~~~~~L~~L~l~~~~~~~~  156 (252)
                      ..+..+.++++|++|++.+ +.+..    ++  .+..+ ++|++|++++|.+... .+..++.+++|++|++++|.+...
T Consensus        91 ~~~~~~~~l~~L~~L~l~~-n~l~~----~~~~~~~~l-~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~  164 (276)
T 2z62_A           91 LALGAFSGLSSLQKLVAVE-TNLAS----LENFPIGHL-KTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSI  164 (276)
T ss_dssp             ECTTTTTTCTTCCEEECTT-SCCCC----STTCCCTTC-TTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEE
T ss_pred             cChhhhcCCccccEEECCC-CCccc----cCchhcccC-CCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcC
Confidence            5557788999999999998 55533    33  57777 9999999999999864 488899999999999999987653


Q ss_pred             eeeecCCCCCcccc----EEEecCCccccceeccccccccccceeeccCCCCCCChH-HHHhccccceeecccC
Q 036414          157 KLACVGCSSFPQLK----ILHLKSMLWLEEWTMGAGAMPKLESLILNPCAYLRKLPE-ELWRIKSLCKLELHWP  225 (252)
Q Consensus       157 ~~~~~~~~~~~~L~----~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~~~~~~~~p~-~l~~l~~L~~L~l~~~  225 (252)
                      ... . +..+++|+    .|++++|. ++.++.......+|+.|++++|... .+|. .+..+++|++|+++++
T Consensus       165 ~~~-~-~~~l~~L~~l~l~L~ls~n~-l~~~~~~~~~~~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~l~~N  234 (276)
T 2z62_A          165 YCT-D-LRVLHQMPLLNLSLDLSLNP-MNFIQPGAFKEIRLKELALDTNQLK-SVPDGIFDRLTSLQKIWLHTN  234 (276)
T ss_dssp             CGG-G-GHHHHTCTTCCEEEECCSSC-CCEECTTSSCSCCEEEEECCSSCCS-CCCTTTTTTCCSCCEEECCSS
T ss_pred             CHH-H-hhhhhhccccceeeecCCCc-ccccCccccCCCcccEEECCCCcee-ecCHhHhcccccccEEEccCC
Confidence            221 2 33455555    89999999 8888766656668999999999865 5554 4578999999999843

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=99.84  E-value=1.2e-20  Score=167.71  Aligned_cols=213  Identities=16%  Similarity=0.115  Sum_probs=148.1

Q ss_pred             CCCCcccc-chHHHhhccccEEEecCCCCCCCCCcccCCCCCCcEecccCCCCC---chhhcCCCCCccEEEeeccCCcc
Q 036414            2 PSSYIDHS-SEDIWMMQKLMHLNFGSITLPAPPKNYSSSLKNLIFISALHPSSC---TPDILSRLPTVQTLRISGDLSHY   77 (252)
Q Consensus         2 ~~~~l~~l-p~~i~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~~l~~~~~---~~~~l~~l~~L~~L~l~~~~~~~   77 (252)
                      .++.|+.+ |.++.++++|++|++++|.+....|..+.++++|++|+ ++.+..   .+..++.+++|++|++++|.  .
T Consensus        41 s~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~-Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~--i  117 (606)
T 3t6q_A           41 SFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLV-LTANPLIFMAETALSGPKALKHLFFIQTG--I  117 (606)
T ss_dssp             TTCCCSEECTTTSTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEE-CTTCCCSEECTTTTSSCTTCCEEECTTSC--C
T ss_pred             cCCccCcCChhHhccCccceEEECCCCccceeChhhccCccccCeee-CCCCcccccChhhhcccccccEeeccccC--c
Confidence            35677777 45688888888888887777766777888888888888 888766   46668888888888888885  3


Q ss_pred             ccchhHhhhccCCCCeEEeeeccchhHHHHhh--ccccCCCCCCceEEeeecccCCCCchhhhcCCCCc--eEEeccCCc
Q 036414           78 HSGVSKSLCELHKLECLKLANQGKMWQITRMI--LSEYKFPPSLTQLSLSNTELIEDPMPTLEKLPHLE--VLKLKQNSY  153 (252)
Q Consensus        78 ~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~l~--~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~~~~L~--~L~l~~~~~  153 (252)
                      ....+..+..+++|++|++.+ +.+..    +  |.+..+ ++|+.|++++|.+....+..++.+++|+  .|++++|.+
T Consensus       118 ~~l~~~~~~~l~~L~~L~L~~-n~l~~----~~~~~~~~l-~~L~~L~L~~n~l~~~~~~~~~~l~~L~~l~L~l~~n~l  191 (606)
T 3t6q_A          118 SSIDFIPLHNQKTLESLYLGS-NHISS----IKLPKGFPT-EKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDI  191 (606)
T ss_dssp             SCGGGSCCTTCTTCCEEECCS-SCCCC----CCCCTTCCC-TTCCEEECCSSCCCEECHHHHHTTTTCCSEEEECTTCCC
T ss_pred             ccCCcchhccCCcccEEECCC-Ccccc----cCcccccCC-cccCEEEcccCcccccChhhhhhhcccceeEEecCCCcc
Confidence            333356677888888888888 44433    3  444456 8888888888888766677777777777  666666554


Q ss_pred             cCcee--------------------------------------------------------------------------e
Q 036414          154 FERKL--------------------------------------------------------------------------A  159 (252)
Q Consensus       154 ~~~~~--------------------------------------------------------------------------~  159 (252)
                      .....                                                                          .
T Consensus       192 ~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~l~~l~~~~~~~~~~~~i~~~~~~~l~~~~L~~L~l~~n~l~~~~~  271 (606)
T 3t6q_A          192 AGIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFNISS  271 (606)
T ss_dssp             CEECTTTTTTCEEEEEECTTCSCHHHHHHHTTTCEEEEEECCCCTTSCCCCCCGGGGGGGGGSEEEEEECTTCCCSSCCT
T ss_pred             CccChhHhhhccccccccCCchhHHHHhhhccccchhheechhhccccccccChhHhchhhcCceeEEEeecCccCccCH
Confidence            32110                                                                          0


Q ss_pred             ecCCCCCccccEEEecCCccccceeccccccccccceeeccCCCCCCChHHHHhccccceeecccC
Q 036414          160 CVGCSSFPQLKILHLKSMLWLEEWTMGAGAMPKLESLILNPCAYLRKLPEELWRIKSLCKLELHWP  225 (252)
Q Consensus       160 ~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~l~~~  225 (252)
                      .. +..+++|++|++++|. ++++|..++.+++|++|++++|...+..|..+..+++|++|+++++
T Consensus       272 ~~-~~~l~~L~~L~l~~n~-l~~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n  335 (606)
T 3t6q_A          272 NT-FHCFSGLQELDLTATH-LSELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGN  335 (606)
T ss_dssp             TT-TTTCTTCSEEECTTSC-CSCCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECCSC
T ss_pred             HH-hccccCCCEEeccCCc-cCCCChhhcccccCCEEECccCCcCcCchhhhhccCcCCEEECCCC
Confidence            01 3346677777777776 6677666677777777777777655433445566666666666655

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=99.84  E-value=6.4e-20  Score=152.22  Aligned_cols=207  Identities=18%  Similarity=0.224  Sum_probs=132.5

Q ss_pred             CCCCccccchHHHhhccccEEEecCCCCCCCCCcccCCCCCCcEecccCCCCC--chhhcCCCCCccEEEeeccCCcccc
Q 036414            2 PSSYIDHSSEDIWMMQKLMHLNFGSITLPAPPKNYSSSLKNLIFISALHPSSC--TPDILSRLPTVQTLRISGDLSHYHS   79 (252)
Q Consensus         2 ~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~~l~~~~~--~~~~l~~l~~L~~L~l~~~~~~~~~   79 (252)
                      .++.++.+| ++..+++|++|++++|.+.. ++. +..+++|++|+ ++.+..  .+..+..+++|++|++++|.   ..
T Consensus        96 ~~n~i~~~~-~~~~l~~L~~L~l~~n~i~~-~~~-~~~l~~L~~L~-l~~n~~~~~~~~~~~l~~L~~L~l~~~~---~~  168 (347)
T 4fmz_A           96 GTNKITDIS-ALQNLTNLRELYLNEDNISD-ISP-LANLTKMYSLN-LGANHNLSDLSPLSNMTGLNYLTVTESK---VK  168 (347)
T ss_dssp             CSSCCCCCG-GGTTCTTCSEEECTTSCCCC-CGG-GTTCTTCCEEE-CTTCTTCCCCGGGTTCTTCCEEECCSSC---CC
T ss_pred             cCCcccCch-HHcCCCcCCEEECcCCcccC-chh-hccCCceeEEE-CCCCCCcccccchhhCCCCcEEEecCCC---cC
Confidence            356677765 47788888888888666543 333 67777777777 666643  44446667777777777664   22


Q ss_pred             chhHhhhccCCCCeEEeeeccchhH---H---HHh------------hccccCCCCCCceEEeeecccCCCCchhhhcCC
Q 036414           80 GVSKSLCELHKLECLKLANQGKMWQ---I---TRM------------ILSEYKFPPSLTQLSLSNTELIEDPMPTLEKLP  141 (252)
Q Consensus        80 ~~~~~l~~l~~L~~L~l~~~~~~~~---~---~~l------------~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~~~  141 (252)
                      .++. +..+++|++|++.+ +.+..   +   .++            ++.+..+ ++|++|++++|.++...+  +..++
T Consensus       169 ~~~~-~~~l~~L~~L~l~~-n~l~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~-~~L~~L~l~~n~l~~~~~--~~~l~  243 (347)
T 4fmz_A          169 DVTP-IANLTDLYSLSLNY-NQIEDISPLASLTSLHYFTAYVNQITDITPVANM-TRLNSLKIGNNKITDLSP--LANLS  243 (347)
T ss_dssp             CCGG-GGGCTTCSEEECTT-SCCCCCGGGGGCTTCCEEECCSSCCCCCGGGGGC-TTCCEEECCSSCCCCCGG--GTTCT
T ss_pred             Cchh-hccCCCCCEEEccC-CcccccccccCCCccceeecccCCCCCCchhhcC-CcCCEEEccCCccCCCcc--hhcCC
Confidence            2222 55566666666665 22211   0   000            1224455 777777777777764333  66777


Q ss_pred             CCceEEeccCCccCceeeecCCCCCccccEEEecCCccccceeccccccccccceeeccCCCCCCChHHHHhccccceee
Q 036414          142 HLEVLKLKQNSYFERKLACVGCSSFPQLKILHLKSMLWLEEWTMGAGAMPKLESLILNPCAYLRKLPEELWRIKSLCKLE  221 (252)
Q Consensus       142 ~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~  221 (252)
                      +|++|++++|.+...  . . ...+++|++|++++|. +++++. +..+++|+.|++++|...+..+..+..+++|++|+
T Consensus       244 ~L~~L~l~~n~l~~~--~-~-~~~l~~L~~L~l~~n~-l~~~~~-~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~  317 (347)
T 4fmz_A          244 QLTWLEIGTNQISDI--N-A-VKDLTKLKMLNVGSNQ-ISDISV-LNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLF  317 (347)
T ss_dssp             TCCEEECCSSCCCCC--G-G-GTTCTTCCEEECCSSC-CCCCGG-GGGCTTCSEEECCSSCCCGGGHHHHHTCTTCSEEE
T ss_pred             CCCEEECCCCccCCC--h-h-HhcCCCcCEEEccCCc-cCCChh-hcCCCCCCEEECcCCcCCCcChhHhhccccCCEEE
Confidence            778888777766542  1 2 5577788888888887 776643 66778888888888876655566677788888888


Q ss_pred             cccCC
Q 036414          222 LHWPQ  226 (252)
Q Consensus       222 l~~~~  226 (252)
                      +++++
T Consensus       318 L~~n~  322 (347)
T 4fmz_A          318 LSQNH  322 (347)
T ss_dssp             CCSSS
T ss_pred             ccCCc
Confidence            88775

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=99.84  E-value=7.6e-21  Score=155.79  Aligned_cols=207  Identities=20%  Similarity=0.179  Sum_probs=161.1

Q ss_pred             cchHHH-------hhccccEEEecCCCCCCCCCccc--CCCCCCcEecccCCCCC--chhhcCCC-----CCccEEEeec
Q 036414            9 SSEDIW-------MMQKLMHLNFGSITLPAPPKNYS--SSLKNLIFISALHPSSC--TPDILSRL-----PTVQTLRISG   72 (252)
Q Consensus         9 lp~~i~-------~l~~L~~L~l~~~~~~~~~~~~l--~~l~~L~~L~~l~~~~~--~~~~l~~l-----~~L~~L~l~~   72 (252)
                      +|..+.       .+++|++|++++|.+....|..+  ..+++|++|+ ++.+..  .|..++.+     ++|++|++++
T Consensus        80 ~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~-Ls~N~l~~~~~~~~~l~~~~~~~L~~L~L~~  158 (312)
T 1wwl_A           80 IPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLEATGPDLNILN-LRNVSWATRDAWLAELQQWLKPGLKVLSIAQ  158 (312)
T ss_dssp             CBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCCSSSCCSCCCSEEE-EESCBCSSSSSHHHHHHTTCCTTCCEEEEES
T ss_pred             cCHHHHHHHHHhcCcCCccEEEccCCcccchhHHHHHHhcCCCccEEE-ccCCCCcchhHHHHHHHHhhcCCCcEEEeeC
Confidence            566555       78999999999888887788876  8999999999 888876  44445554     9999999999


Q ss_pred             cCCccccchhHhhhccCCCCeEEeeeccchhHHHHhhccc--cCCCCCCceEEeeecccCCC---CchhhhcCCCCceEE
Q 036414           73 DLSHYHSGVSKSLCELHKLECLKLANQGKMWQITRMILSE--YKFPPSLTQLSLSNTELIED---PMPTLEKLPHLEVLK  147 (252)
Q Consensus        73 ~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~l~~~~--~~~~~~L~~l~l~~~~~~~~---~~~~l~~~~~L~~L~  147 (252)
                      |.  .....+..+..+++|++|++++|.-.+.. .+.+.+  ..+ ++|++|++++|.++..   ....+..+++|++|+
T Consensus       159 N~--l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~-~~~~~~~~~~l-~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~  234 (312)
T 1wwl_A          159 AH--SLNFSCEQVRVFPALSTLDLSDNPELGER-GLISALCPLKF-PTLQVLALRNAGMETPSGVCSALAAARVQLQGLD  234 (312)
T ss_dssp             CS--CCCCCTTTCCCCSSCCEEECCSCTTCHHH-HHHHHSCTTSC-TTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEE
T ss_pred             CC--CccchHHHhccCCCCCEEECCCCCcCcch-HHHHHHHhccC-CCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEE
Confidence            96  55555578899999999999994322210 002233  777 9999999999998732   123346789999999


Q ss_pred             eccCCccCceeeecCCCCCccccEEEecCCccccceeccccccccccceeeccCCCCCCChHHHHhccccceeecccCC
Q 036414          148 LKQNSYFERKLACVGCSSFPQLKILHLKSMLWLEEWTMGAGAMPKLESLILNPCAYLRKLPEELWRIKSLCKLELHWPQ  226 (252)
Q Consensus       148 l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~l~~~~  226 (252)
                      +++|.+.+...... ...+++|++|++++|. ++.++....  ++|+.|++++|... .+|. +..+++|++|++++.+
T Consensus       235 Ls~N~l~~~~~~~~-~~~l~~L~~L~Ls~N~-l~~ip~~~~--~~L~~L~Ls~N~l~-~~p~-~~~l~~L~~L~L~~N~  307 (312)
T 1wwl_A          235 LSHNSLRDAAGAPS-CDWPSQLNSLNLSFTG-LKQVPKGLP--AKLSVLDLSYNRLD-RNPS-PDELPQVGNLSLKGNP  307 (312)
T ss_dssp             CTTSCCCSSCCCSC-CCCCTTCCEEECTTSC-CSSCCSSCC--SEEEEEECCSSCCC-SCCC-TTTSCEEEEEECTTCT
T ss_pred             CCCCcCCcccchhh-hhhcCCCCEEECCCCc-cChhhhhcc--CCceEEECCCCCCC-CChh-HhhCCCCCEEeccCCC
Confidence            99999877542223 5568999999999999 888877665  89999999999875 4576 7889999999999875

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=99.84  E-value=1.5e-20  Score=161.53  Aligned_cols=208  Identities=18%  Similarity=0.119  Sum_probs=170.5

Q ss_pred             CCCccccchHHHhhccccEEEecCCCCCCCCCcccCCCCCCcEecccCCCCC---chhhcCCCCCccEEEeeccCCcccc
Q 036414            3 SSYIDHSSEDIWMMQKLMHLNFGSITLPAPPKNYSSSLKNLIFISALHPSSC---TPDILSRLPTVQTLRISGDLSHYHS   79 (252)
Q Consensus         3 ~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~~l~~~~~---~~~~l~~l~~L~~L~l~~~~~~~~~   79 (252)
                      +..++++|..+.  +++++|++++|.+....+..+.++++|++|+ ++.+.+   .+..+..+++|++|++++|.  ...
T Consensus        63 ~~~l~~iP~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~-Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~--l~~  137 (452)
T 3zyi_A           63 RRGLSEVPQGIP--SNTRYLNLMENNIQMIQADTFRHLHHLEVLQ-LGRNSIRQIEVGAFNGLASLNTLELFDNW--LTV  137 (452)
T ss_dssp             SSCCSSCCSCCC--TTCSEEECCSSCCCEECTTTTTTCTTCCEEE-CCSSCCCEECTTTTTTCTTCCEEECCSSC--CSB
T ss_pred             CCCcCccCCCCC--CCccEEECcCCcCceECHHHcCCCCCCCEEE-CCCCccCCcChhhccCcccCCEEECCCCc--CCc
Confidence            356788887654  6899999998888777788899999999999 998877   45668899999999999995  443


Q ss_pred             chhHhhhccCCCCeEEeeeccchhHHHHhhc--cccCCCCCCceEEeeec-ccCCCCchhhhcCCCCceEEeccCCccCc
Q 036414           80 GVSKSLCELHKLECLKLANQGKMWQITRMIL--SEYKFPPSLTQLSLSNT-ELIEDPMPTLEKLPHLEVLKLKQNSYFER  156 (252)
Q Consensus        80 ~~~~~l~~l~~L~~L~l~~~~~~~~~~~l~~--~~~~~~~~L~~l~l~~~-~~~~~~~~~l~~~~~L~~L~l~~~~~~~~  156 (252)
                      ..+..+..+++|++|++++ +.+..    ++  .+..+ ++|++|++++| .+....+..+..+++|+.|++++|.+...
T Consensus       138 ~~~~~~~~l~~L~~L~L~~-N~l~~----~~~~~~~~l-~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~  211 (452)
T 3zyi_A          138 IPSGAFEYLSKLRELWLRN-NPIES----IPSYAFNRV-PSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDM  211 (452)
T ss_dssp             CCTTTSSSCTTCCEEECCS-CCCCE----ECTTTTTTC-TTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSSC
T ss_pred             cChhhhcccCCCCEEECCC-CCcce----eCHhHHhcC-CcccEEeCCCCCCccccChhhccCCCCCCEEECCCCccccc
Confidence            3345578899999999999 55655    55  56777 99999999985 44444455788999999999999988763


Q ss_pred             eeeecCCCCCccccEEEecCCccccce-eccccccccccceeeccCCCCCCChHHHHhccccceeecccCC
Q 036414          157 KLACVGCSSFPQLKILHLKSMLWLEEW-TMGAGAMPKLESLILNPCAYLRKLPEELWRIKSLCKLELHWPQ  226 (252)
Q Consensus       157 ~~~~~~~~~~~~L~~L~l~~~~~l~~~-~~~~~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~l~~~~  226 (252)
                        + . ...+++|+.|++++|. ++++ +..+..+++|+.|++++|......+..+..+++|++|+++++.
T Consensus       212 --~-~-~~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~  277 (452)
T 3zyi_A          212 --P-N-LTPLVGLEELEMSGNH-FPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNN  277 (452)
T ss_dssp             --C-C-CTTCTTCCEEECTTSC-CSEECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSC
T ss_pred             --c-c-ccccccccEEECcCCc-CcccCcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCc
Confidence              2 3 6789999999999999 8776 5668899999999999998766556677889999999999874

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=99.84  E-value=1e-20  Score=162.48  Aligned_cols=110  Identities=25%  Similarity=0.263  Sum_probs=78.9

Q ss_pred             ccCCCCCCceEEeeecccCCCCchhhhcCCCCceEEeccCCccCceeeecCCCCCccccEEEecCCccccce-ecccccc
Q 036414          112 EYKFPPSLTQLSLSNTELIEDPMPTLEKLPHLEVLKLKQNSYFERKLACVGCSSFPQLKILHLKSMLWLEEW-TMGAGAM  190 (252)
Q Consensus       112 ~~~~~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~-~~~~~~l  190 (252)
                      +..+ ++|++|++++|.+....+..++.+++|++|++++|.+.+.. ... +.++++|++|++++|. ++.+ +..++.+
T Consensus       295 ~~~l-~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~-~~~-~~~l~~L~~L~Ls~N~-l~~~~~~~~~~l  370 (455)
T 3v47_A          295 FSHF-TDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSID-SRM-FENLDKLEVLDLSYNH-IRALGDQSFLGL  370 (455)
T ss_dssp             TTTC-TTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEEC-GGG-GTTCTTCCEEECCSSC-CCEECTTTTTTC
T ss_pred             cccC-CCCCEEECCCCcccccChhHhcCcccCCEEECCCCccCCcC-hhH-hcCcccCCEEECCCCc-ccccChhhcccc
Confidence            4445 67777777777776666667777777788888777664422 223 5678888888888888 7766 5567788


Q ss_pred             ccccceeeccCCCCCCChH-HHHhccccceeecccCC
Q 036414          191 PKLESLILNPCAYLRKLPE-ELWRIKSLCKLELHWPQ  226 (252)
Q Consensus       191 ~~L~~L~l~~~~~~~~~p~-~l~~l~~L~~L~l~~~~  226 (252)
                      ++|+.|++++|.... +|. .+..+++|++|++++++
T Consensus       371 ~~L~~L~L~~N~l~~-~~~~~~~~l~~L~~L~l~~N~  406 (455)
T 3v47_A          371 PNLKELALDTNQLKS-VPDGIFDRLTSLQKIWLHTNP  406 (455)
T ss_dssp             TTCCEEECCSSCCSC-CCTTTTTTCTTCCEEECCSSC
T ss_pred             ccccEEECCCCcccc-CCHhHhccCCcccEEEccCCC
Confidence            899999999887654 544 45788999999998653

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=99.84  E-value=2e-20  Score=160.32  Aligned_cols=208  Identities=18%  Similarity=0.152  Sum_probs=170.2

Q ss_pred             CCCccccchHHHhhccccEEEecCCCCCCCCCcccCCCCCCcEecccCCCCC---chhhcCCCCCccEEEeeccCCcccc
Q 036414            3 SSYIDHSSEDIWMMQKLMHLNFGSITLPAPPKNYSSSLKNLIFISALHPSSC---TPDILSRLPTVQTLRISGDLSHYHS   79 (252)
Q Consensus         3 ~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~~l~~~~~---~~~~l~~l~~L~~L~l~~~~~~~~~   79 (252)
                      +..++++|..+.  +++++|++++|.+....+..+.++++|++|+ ++.+.+   .+..+..+++|++|++++|.  ...
T Consensus        52 ~~~l~~iP~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~-Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~--l~~  126 (440)
T 3zyj_A           52 RKNLREVPDGIS--TNTRLLNLHENQIQIIKVNSFKHLRHLEILQ-LSRNHIRTIEIGAFNGLANLNTLELFDNR--LTT  126 (440)
T ss_dssp             SCCCSSCCSCCC--TTCSEEECCSCCCCEECTTTTSSCSSCCEEE-CCSSCCCEECGGGGTTCSSCCEEECCSSC--CSS
T ss_pred             CCCcCcCCCCCC--CCCcEEEccCCcCCeeCHHHhhCCCCCCEEE-CCCCcCCccChhhccCCccCCEEECCCCc--CCe
Confidence            356788888765  6899999998888777778899999999999 998877   45668899999999999995  333


Q ss_pred             chhHhhhccCCCCeEEeeeccchhHHHHhhc--cccCCCCCCceEEeeec-ccCCCCchhhhcCCCCceEEeccCCccCc
Q 036414           80 GVSKSLCELHKLECLKLANQGKMWQITRMIL--SEYKFPPSLTQLSLSNT-ELIEDPMPTLEKLPHLEVLKLKQNSYFER  156 (252)
Q Consensus        80 ~~~~~l~~l~~L~~L~l~~~~~~~~~~~l~~--~~~~~~~~L~~l~l~~~-~~~~~~~~~l~~~~~L~~L~l~~~~~~~~  156 (252)
                      ..+..+..+++|++|++.+ +.+..    ++  .+..+ ++|++|++++| .+....+..+..+++|+.|++++|.+...
T Consensus       127 ~~~~~~~~l~~L~~L~L~~-N~i~~----~~~~~~~~l-~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~  200 (440)
T 3zyj_A          127 IPNGAFVYLSKLKELWLRN-NPIES----IPSYAFNRI-PSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLREI  200 (440)
T ss_dssp             CCTTTSCSCSSCCEEECCS-CCCCE----ECTTTTTTC-TTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCSSC
T ss_pred             eCHhHhhccccCceeeCCC-Ccccc----cCHHHhhhC-cccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCccc
Confidence            3344688999999999999 65655    55  57777 99999999985 44444456788999999999999988753


Q ss_pred             eeeecCCCCCccccEEEecCCccccce-eccccccccccceeeccCCCCCCChHHHHhccccceeecccCC
Q 036414          157 KLACVGCSSFPQLKILHLKSMLWLEEW-TMGAGAMPKLESLILNPCAYLRKLPEELWRIKSLCKLELHWPQ  226 (252)
Q Consensus       157 ~~~~~~~~~~~~L~~L~l~~~~~l~~~-~~~~~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~l~~~~  226 (252)
                        + . ...+++|++|++++|. ++.+ +..+..+++|+.|++++|......+..+..+++|++|+++++.
T Consensus       201 --~-~-~~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~  266 (440)
T 3zyj_A          201 --P-N-LTPLIKLDELDLSGNH-LSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNN  266 (440)
T ss_dssp             --C-C-CTTCSSCCEEECTTSC-CCEECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSC
T ss_pred             --c-c-cCCCcccCEEECCCCc-cCccChhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCC
Confidence              2 3 6789999999999998 8877 5678889999999999998765556667889999999999874

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=99.83  E-value=3.5e-20  Score=159.18  Aligned_cols=93  Identities=19%  Similarity=0.177  Sum_probs=52.6

Q ss_pred             CCCcccc-chHHHhhccccEEEecCCCCCCCC-CcccCCCCCCcEecccCCCCC---chhhcCCCCCccEEEeeccCCcc
Q 036414            3 SSYIDHS-SEDIWMMQKLMHLNFGSITLPAPP-KNYSSSLKNLIFISALHPSSC---TPDILSRLPTVQTLRISGDLSHY   77 (252)
Q Consensus         3 ~~~l~~l-p~~i~~l~~L~~L~l~~~~~~~~~-~~~l~~l~~L~~L~~l~~~~~---~~~~l~~l~~L~~L~l~~~~~~~   77 (252)
                      ++.++.+ |.++.++++|++|++++|.....+ +..+.++++|++|+ ++.+..   .+..++.+++|++|++++|.  .
T Consensus        39 ~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~-Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~--l  115 (455)
T 3v47_A           39 LNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILK-LDYNQFLQLETGAFNGLANLEVLTLTQCN--L  115 (455)
T ss_dssp             SSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEE-CTTCTTCEECTTTTTTCTTCCEEECTTSC--C
T ss_pred             CCccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEe-CCCCccCccChhhccCcccCCEEeCCCCC--C
Confidence            3555555 445666666666666655544333 34466666666666 666554   34456666666666666664  3


Q ss_pred             ccchhHh--hhccCCCCeEEeee
Q 036414           78 HSGVSKS--LCELHKLECLKLAN   98 (252)
Q Consensus        78 ~~~~~~~--l~~l~~L~~L~l~~   98 (252)
                      ....+..  +..+++|++|++++
T Consensus       116 ~~~~~~~~~~~~l~~L~~L~L~~  138 (455)
T 3v47_A          116 DGAVLSGNFFKPLTSLEMLVLRD  138 (455)
T ss_dssp             BTHHHHSSTTTTCTTCCEEECCS
T ss_pred             CccccCcccccCcccCCEEECCC
Confidence            3333333  55566666666655

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=99.83  E-value=1.5e-20  Score=156.47  Aligned_cols=209  Identities=17%  Similarity=0.117  Sum_probs=165.5

Q ss_pred             CCCccccchHHHhhccccEEEecCCCCCCCCCcccCCCCCCcEecccCCCCC---chhhcCCCCCccEEEeeccCCcccc
Q 036414            3 SSYIDHSSEDIWMMQKLMHLNFGSITLPAPPKNYSSSLKNLIFISALHPSSC---TPDILSRLPTVQTLRISGDLSHYHS   79 (252)
Q Consensus         3 ~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~~l~~~~~---~~~~l~~l~~L~~L~l~~~~~~~~~   79 (252)
                      ++.++++|.++.  ++|++|++++|.+....+..+.++++|++|+ ++.+..   .+..++.+++|++|++++|.  . .
T Consensus        40 ~~~l~~iP~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~-L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~--l-~  113 (353)
T 2z80_A           40 SGSLNSIPSGLT--EAVKSLDLSNNRITYISNSDLQRCVNLQALV-LTSNGINTIEEDSFSSLGSLEHLDLSYNY--L-S  113 (353)
T ss_dssp             STTCSSCCTTCC--TTCCEEECTTSCCCEECTTTTTTCTTCCEEE-CTTSCCCEECTTTTTTCTTCCEEECCSSC--C-S
T ss_pred             CCCccccccccc--ccCcEEECCCCcCcccCHHHhccCCCCCEEE-CCCCccCccCHhhcCCCCCCCEEECCCCc--C-C
Confidence            567889998765  4899999998887665555799999999999 988877   45568899999999999995  3 3


Q ss_pred             chhH-hhhccCCCCeEEeeeccchhHHHHhhcc---ccCCCCCCceEEeeec-ccCCCCchhhhcCCCCceEEeccCCcc
Q 036414           80 GVSK-SLCELHKLECLKLANQGKMWQITRMILS---EYKFPPSLTQLSLSNT-ELIEDPMPTLEKLPHLEVLKLKQNSYF  154 (252)
Q Consensus        80 ~~~~-~l~~l~~L~~L~l~~~~~~~~~~~l~~~---~~~~~~~L~~l~l~~~-~~~~~~~~~l~~~~~L~~L~l~~~~~~  154 (252)
                      .++. .+..+++|++|++.+ +.+..    +|.   +..+ ++|++|++++| .+....+..++.+++|++|++++|.+.
T Consensus       114 ~~~~~~~~~l~~L~~L~L~~-n~l~~----l~~~~~~~~l-~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~  187 (353)
T 2z80_A          114 NLSSSWFKPLSSLTFLNLLG-NPYKT----LGETSLFSHL-TKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQ  187 (353)
T ss_dssp             SCCHHHHTTCTTCSEEECTT-CCCSS----SCSSCSCTTC-TTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCC
T ss_pred             cCCHhHhCCCccCCEEECCC-CCCcc----cCchhhhccC-CCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCcC
Confidence            4544 488999999999998 55555    553   6677 99999999998 466556678899999999999999876


Q ss_pred             CceeeecCCCCCccccEEEecCCccccceecc-ccccccccceeeccCCCCCC---------------------------
Q 036414          155 ERKLACVGCSSFPQLKILHLKSMLWLEEWTMG-AGAMPKLESLILNPCAYLRK---------------------------  206 (252)
Q Consensus       155 ~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~-~~~l~~L~~L~l~~~~~~~~---------------------------  206 (252)
                      ... +.. ...+++|++|++++|. +..++.. .+.+++|+.|++++|.....                           
T Consensus       188 ~~~-~~~-l~~l~~L~~L~l~~n~-l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~~~~l~~l~L~~~~l~~~  264 (353)
T 2z80_A          188 SYE-PKS-LKSIQNVSHLILHMKQ-HILLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDE  264 (353)
T ss_dssp             EEC-TTT-TTTCSEEEEEEEECSC-STTHHHHHHHHTTTEEEEEEESCBCTTCCCC------CCCCCCEEEEESCBCCHH
T ss_pred             ccC-HHH-HhccccCCeecCCCCc-cccchhhhhhhcccccEEECCCCccccccccccccccccchhhccccccccccCc
Confidence            532 223 6789999999999999 7766543 34588999999999876541                           


Q ss_pred             ----ChHHHHhccccceeecccCC
Q 036414          207 ----LPEELWRIKSLCKLELHWPQ  226 (252)
Q Consensus       207 ----~p~~l~~l~~L~~L~l~~~~  226 (252)
                          +|..+..+++|++|+++++.
T Consensus       265 ~l~~l~~~l~~l~~L~~L~Ls~N~  288 (353)
T 2z80_A          265 SLFQVMKLLNQISGLLELEFSRNQ  288 (353)
T ss_dssp             HHHHHHHHHHTCTTCCEEECCSSC
T ss_pred             chhhhHHHHhcccCCCEEECCCCC
Confidence                34556778889999988774

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=99.83  E-value=5.9e-20  Score=163.20  Aligned_cols=213  Identities=19%  Similarity=0.136  Sum_probs=110.8

Q ss_pred             CCCccccchHHHhhccccEEEecCCCCCCCCCcccC-------------------------CCCCCcEecccCCCCC--c
Q 036414            3 SSYIDHSSEDIWMMQKLMHLNFGSITLPAPPKNYSS-------------------------SLKNLIFISALHPSSC--T   55 (252)
Q Consensus         3 ~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~~~~l~-------------------------~l~~L~~L~~l~~~~~--~   55 (252)
                      ++.++++|..+..+++|++|++++|.+....|..+.                         .+++|++|+ ++.+..  .
T Consensus       287 ~n~l~~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~-l~~n~l~~~  365 (606)
T 3t6q_A          287 ATHLSELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELD-LSHDDIETS  365 (606)
T ss_dssp             TSCCSCCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECCSCSSCCBCCSSTTTTCTTCCEEE-CCSSCCCEE
T ss_pred             CCccCCCChhhcccccCCEEECccCCcCcCchhhhhccCcCCEEECCCCCcccccchhhhhccCcCCEEE-CCCCccccc
Confidence            455566666666666666666665554433333444                         444455554 444443  1


Q ss_pred             ---hhhcCCCCCccEEEeeccCCccccchhHhhhccCCCCeEEeeeccchhHHHHhhc--cccCCCCCCceEEeeecccC
Q 036414           56 ---PDILSRLPTVQTLRISGDLSHYHSGVSKSLCELHKLECLKLANQGKMWQITRMIL--SEYKFPPSLTQLSLSNTELI  130 (252)
Q Consensus        56 ---~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~l~~--~~~~~~~~L~~l~l~~~~~~  130 (252)
                         +..++.+++|++|++++|.  .....+..+..+++|++|++.+ +.+...   .+  .+..+ ++|++|++++|.+.
T Consensus       366 ~~~~~~~~~l~~L~~L~l~~n~--l~~~~~~~~~~l~~L~~L~l~~-n~l~~~---~~~~~~~~l-~~L~~L~l~~n~l~  438 (606)
T 3t6q_A          366 DCCNLQLRNLSHLQSLNLSYNE--PLSLKTEAFKECPQLELLDLAF-TRLKVK---DAQSPFQNL-HLLKVLNLSHSLLD  438 (606)
T ss_dssp             EESTTTTTTCTTCCEEECCSCS--CEEECTTTTTTCTTCSEEECTT-CCEECC---TTCCTTTTC-TTCCEEECTTCCCB
T ss_pred             cCcchhcccCCCCCEEECCCCc--CCcCCHHHhcCCccCCeEECCC-CcCCCc---ccchhhhCc-ccCCEEECCCCccC
Confidence               3334555555555555554  3333344555556666666655 222110   12  24555 66777777766666


Q ss_pred             CCCchhhhcCCCCceEEeccCCccCceee--ecCCCCCccccEEEecCCccccce-------------------------
Q 036414          131 EDPMPTLEKLPHLEVLKLKQNSYFERKLA--CVGCSSFPQLKILHLKSMLWLEEW-------------------------  183 (252)
Q Consensus       131 ~~~~~~l~~~~~L~~L~l~~~~~~~~~~~--~~~~~~~~~L~~L~l~~~~~l~~~-------------------------  183 (252)
                      ...+..++.+++|++|++++|.+.+..+.  .. ...+++|++|++++|. ++++                         
T Consensus       439 ~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~-~~~l~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~  516 (606)
T 3t6q_A          439 ISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNS-LQTLGRLEILVLSFCD-LSSIDQHAFTSLKMMNHVDLSHNRLTSSS  516 (606)
T ss_dssp             TTCTTTTTTCTTCCEEECTTCBCGGGEECSSCG-GGGCTTCCEEECTTSC-CCEECTTTTTTCTTCCEEECCSSCCCGGG
T ss_pred             CcCHHHHhCCCCCCEEECCCCCCCccccccchh-hccCCCccEEECCCCc-cCccChhhhccccCCCEEECCCCccCcCC
Confidence            55566666666666666666655432211  11 2344444444444444 3333                         


Q ss_pred             eccccccccccceeeccCCCCCCChHHHHhccccceeecccCC
Q 036414          184 TMGAGAMPKLESLILNPCAYLRKLPEELWRIKSLCKLELHWPQ  226 (252)
Q Consensus       184 ~~~~~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~l~~~~  226 (252)
                      +..++.+++| .|++++|......|..+..+++|+++++++++
T Consensus       517 ~~~l~~l~~L-~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~  558 (606)
T 3t6q_A          517 IEALSHLKGI-YLNLASNHISIILPSLLPILSQQRTINLRQNP  558 (606)
T ss_dssp             GGGGTTCCSC-EEECCSSCCCCCCGGGHHHHHTSSEEECTTCC
T ss_pred             hhHhCccccc-EEECcCCcccccCHhhcccCCCCCEEeCCCCC
Confidence            2333444445 55555555444445556667777777777654

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=99.83  E-value=3.2e-20  Score=150.08  Aligned_cols=192  Identities=19%  Similarity=0.148  Sum_probs=159.7

Q ss_pred             CCCCccccch-HHHhhccccEEEecCCCCCCCCCcccCCCCCCcEecccCCCC-C---chhhcCCCCCccEEEeeccCCc
Q 036414            2 PSSYIDHSSE-DIWMMQKLMHLNFGSITLPAPPKNYSSSLKNLIFISALHPSS-C---TPDILSRLPTVQTLRISGDLSH   76 (252)
Q Consensus         2 ~~~~l~~lp~-~i~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~~l~~~~-~---~~~~l~~l~~L~~L~l~~~~~~   76 (252)
                      .++.++.+|. .+..+++|++|++++|.+....+..+..+++|++|+ ++.+. .   .+..+..+++|++|++++|.  
T Consensus        40 ~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~-l~~n~~l~~~~~~~~~~l~~L~~L~l~~n~--  116 (285)
T 1ozn_A           40 HGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLD-LSDNAQLRSVDPATFHGLGRLHTLHLDRCG--  116 (285)
T ss_dssp             TTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEE-CCSCTTCCCCCTTTTTTCTTCCEEECTTSC--
T ss_pred             eCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEe-CCCCCCccccCHHHhcCCcCCCEEECCCCc--
Confidence            3577888875 589999999999998877766688899999999999 88886 4   36678899999999999996  


Q ss_pred             cccchhHhhhccCCCCeEEeeeccchhHHHHhhc--cccCCCCCCceEEeeecccCCCCchhhhcCCCCceEEeccCCcc
Q 036414           77 YHSGVSKSLCELHKLECLKLANQGKMWQITRMIL--SEYKFPPSLTQLSLSNTELIEDPMPTLEKLPHLEVLKLKQNSYF  154 (252)
Q Consensus        77 ~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~l~~--~~~~~~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~  154 (252)
                      .....+..+..+++|++|++.+ +.+..    ++  .+..+ ++|++|++++|.++...+..+..+++|+.|++++|.+.
T Consensus       117 l~~~~~~~~~~l~~L~~L~l~~-n~l~~----~~~~~~~~l-~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~  190 (285)
T 1ozn_A          117 LQELGPGLFRGLAALQYLYLQD-NALQA----LPDDTFRDL-GNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVA  190 (285)
T ss_dssp             CCCCCTTTTTTCTTCCEEECCS-SCCCC----CCTTTTTTC-TTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCC
T ss_pred             CCEECHhHhhCCcCCCEEECCC-Ccccc----cCHhHhccC-CCccEEECCCCcccccCHHHhcCccccCEEECCCCccc
Confidence            5555567788999999999999 55645    45  46777 99999999999998666677889999999999999876


Q ss_pred             CceeeecCCCCCccccEEEecCCccccceec-cccccccccceeeccCCCCC
Q 036414          155 ERKLACVGCSSFPQLKILHLKSMLWLEEWTM-GAGAMPKLESLILNPCAYLR  205 (252)
Q Consensus       155 ~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~-~~~~l~~L~~L~l~~~~~~~  205 (252)
                      .... .. +..+++|+.|++++|. +++++. .++.+++|+.|++++|+...
T Consensus       191 ~~~~-~~-~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~N~~~c  239 (285)
T 1ozn_A          191 HVHP-HA-FRDLGRLMTLYLFANN-LSALPTEALAPLRALQYLRLNDNPWVC  239 (285)
T ss_dssp             EECT-TT-TTTCTTCCEEECCSSC-CSCCCHHHHTTCTTCCEEECCSSCEEC
T ss_pred             ccCH-hH-ccCcccccEeeCCCCc-CCcCCHHHcccCcccCEEeccCCCccC
Confidence            5322 23 6789999999999998 887754 37889999999999998654

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.83  E-value=5.3e-20  Score=163.42  Aligned_cols=215  Identities=20%  Similarity=0.228  Sum_probs=162.6

Q ss_pred             CCCCccccch-HHHhhccccEEEecCCCCCCCCCcccCCCCCCcEecccCCCCC--chhh-cCCCCCccEEEeeccCCcc
Q 036414            2 PSSYIDHSSE-DIWMMQKLMHLNFGSITLPAPPKNYSSSLKNLIFISALHPSSC--TPDI-LSRLPTVQTLRISGDLSHY   77 (252)
Q Consensus         2 ~~~~l~~lp~-~i~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~~l~~~~~--~~~~-l~~l~~L~~L~l~~~~~~~   77 (252)
                      .++.++.+|. +++.+++|++|++++|.+....|..++++++|++|+ ++.+.+  ++.. ++.+++|++|++++|.  .
T Consensus        83 ~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~-L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~--l  159 (597)
T 3oja_B           83 NDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLV-LERNDLSSLPRGIFHNTPKLTTLSMSNNN--L  159 (597)
T ss_dssp             TTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE-CCSSCCCCCCTTTTTTCTTCCEEECCSSC--C
T ss_pred             CCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEE-eeCCCCCCCCHHHhccCCCCCEEEeeCCc--C
Confidence            3566777765 678888888888887777666666678888888888 777766  4444 4778888888888775  4


Q ss_pred             ccchhHhhhccCCCCeEEeeeccchh-----HHHHh--------------------------------------------
Q 036414           78 HSGVSKSLCELHKLECLKLANQGKMW-----QITRM--------------------------------------------  108 (252)
Q Consensus        78 ~~~~~~~l~~l~~L~~L~l~~~~~~~-----~~~~l--------------------------------------------  108 (252)
                      ....+..+..+++|+.|++++| .+.     .+.+|                                            
T Consensus       160 ~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~l~~L~~L~l~~n~l~~l~~~~~L~~L~ls~n~l~~~~~~~~~~L~~L~  238 (597)
T 3oja_B          160 ERIEDDTFQATTSLQNLQLSSN-RLTHVDLSLIPSLFHANVSYNLLSTLAIPIAVEELDASHNSINVVRGPVNVELTILK  238 (597)
T ss_dssp             CBCCTTTTTTCTTCCEEECTTS-CCSBCCGGGCTTCSEEECCSSCCSEEECCTTCSEEECCSSCCCEEECSCCSCCCEEE
T ss_pred             CCCChhhhhcCCcCcEEECcCC-CCCCcChhhhhhhhhhhcccCccccccCCchhheeeccCCcccccccccCCCCCEEE
Confidence            4444556677777777777663 221     10000                                            


Q ss_pred             --------hccccCCCCCCceEEeeecccCCCCchhhhcCCCCceEEeccCCccCceeeecCCCCCccccEEEecCCccc
Q 036414          109 --------ILSEYKFPPSLTQLSLSNTELIEDPMPTLEKLPHLEVLKLKQNSYFERKLACVGCSSFPQLKILHLKSMLWL  180 (252)
Q Consensus       109 --------~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l  180 (252)
                              .+++..+ ++|+.|++++|.+....|..++.+++|+.|++++|.+..  ++.. ...+++|+.|++++|. +
T Consensus       239 L~~n~l~~~~~l~~l-~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~--l~~~-~~~l~~L~~L~Ls~N~-l  313 (597)
T 3oja_B          239 LQHNNLTDTAWLLNY-PGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVA--LNLY-GQPIPTLKVLDLSHNH-L  313 (597)
T ss_dssp             CCSSCCCCCGGGGGC-TTCSEEECCSSCCCEEESGGGTTCSSCCEEECTTSCCCE--EECS-SSCCTTCCEEECCSSC-C
T ss_pred             CCCCCCCCChhhccC-CCCCEEECCCCccCCCCHHHhcCccCCCEEECCCCCCCC--CCcc-cccCCCCcEEECCCCC-C
Confidence                    1235566 899999999999987788899999999999999998876  3434 6679999999999999 8


Q ss_pred             cceeccccccccccceeeccCCCCCCChHHHHhccccceeecccCCHH
Q 036414          181 EEWTMGAGAMPKLESLILNPCAYLRKLPEELWRIKSLCKLELHWPQPE  228 (252)
Q Consensus       181 ~~~~~~~~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~l~~~~~~  228 (252)
                      ..++..++.+++|+.|++++|... .++  +..+++|+.|++++++..
T Consensus       314 ~~i~~~~~~l~~L~~L~L~~N~l~-~~~--~~~~~~L~~L~l~~N~~~  358 (597)
T 3oja_B          314 LHVERNQPQFDRLENLYLDHNSIV-TLK--LSTHHTLKNLTLSHNDWD  358 (597)
T ss_dssp             CCCGGGHHHHTTCSEEECCSSCCC-CCC--CCTTCCCSEEECCSSCEE
T ss_pred             CccCcccccCCCCCEEECCCCCCC-CcC--hhhcCCCCEEEeeCCCCC
Confidence            889888889999999999999875 444  567899999999998843

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=99.82  E-value=1.2e-20  Score=168.70  Aligned_cols=140  Identities=14%  Similarity=0.062  Sum_probs=73.9

Q ss_pred             CCCccccch--HHHhhccccEEEecCCCCCCCCCcccCCCCCCcEecccCCCCC--chhhcCCCCC-ccEEEeeccCCcc
Q 036414            3 SSYIDHSSE--DIWMMQKLMHLNFGSITLPAPPKNYSSSLKNLIFISALHPSSC--TPDILSRLPT-VQTLRISGDLSHY   77 (252)
Q Consensus         3 ~~~l~~lp~--~i~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~~l~~~~~--~~~~l~~l~~-L~~L~l~~~~~~~   77 (252)
                      ++.++.+|.  .++++++|++|++++|.+...+| .+..+++|++|+ ++.+..  +|..++.+++ |++|++++|.   
T Consensus       314 ~n~l~~ip~~~~l~~l~~L~~L~L~~N~l~g~ip-~~~~l~~L~~L~-L~~N~l~~lp~~l~~l~~~L~~L~Ls~N~---  388 (636)
T 4eco_A          314 YNNLKTFPVETSLQKMKKLGMLECLYNQLEGKLP-AFGSEIKLASLN-LAYNQITEIPANFCGFTEQVENLSFAHNK---  388 (636)
T ss_dssp             SSCCSSCCCHHHHTTCTTCCEEECCSCCCEEECC-CCEEEEEESEEE-CCSSEEEECCTTSEEECTTCCEEECCSSC---
T ss_pred             CCcCCccCchhhhccCCCCCEEeCcCCcCccchh-hhCCCCCCCEEE-CCCCccccccHhhhhhcccCcEEEccCCc---
Confidence            456666666  66777777777777666554555 566666666666 665554  4555555666 6666666663   


Q ss_pred             ccchhHhhhccC--CCCeEEeeeccch-hHHHHhhc-ccc-------CCCCCCceEEeeecccCCCCchhhhcCCCCceE
Q 036414           78 HSGVSKSLCELH--KLECLKLANQGKM-WQITRMIL-SEY-------KFPPSLTQLSLSNTELIEDPMPTLEKLPHLEVL  146 (252)
Q Consensus        78 ~~~~~~~l~~l~--~L~~L~l~~~~~~-~~~~~l~~-~~~-------~~~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~L  146 (252)
                      ...+|..+..+.  +|+.|++++ +.+ +.    .| .+.       .+ ++|++|++++|.++..+...+..+++|+.|
T Consensus       389 l~~lp~~~~~~~l~~L~~L~Ls~-N~l~~~----~p~~l~~~~~~~~~~-~~L~~L~Ls~N~l~~lp~~~~~~l~~L~~L  462 (636)
T 4eco_A          389 LKYIPNIFDAKSVSVMSAIDFSY-NEIGSV----DGKNFDPLDPTPFKG-INVSSINLSNNQISKFPKELFSTGSPLSSI  462 (636)
T ss_dssp             CSSCCSCCCTTCSSCEEEEECCS-SCTTTT----TTCSSCTTCSSCCCC-CCEEEEECCSSCCCSCCTHHHHTTCCCSEE
T ss_pred             CcccchhhhhcccCccCEEECcC-CcCCCc----chhhhcccccccccC-CCCCEEECcCCccCcCCHHHHccCCCCCEE
Confidence            224444443332  555555555 222 21    22 233       33 455555555555543333333344455555


Q ss_pred             EeccCCc
Q 036414          147 KLKQNSY  153 (252)
Q Consensus       147 ~l~~~~~  153 (252)
                      ++++|.+
T Consensus       463 ~Ls~N~l  469 (636)
T 4eco_A          463 NLMGNML  469 (636)
T ss_dssp             ECCSSCC
T ss_pred             ECCCCCC
Confidence            5544443

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=99.82  E-value=3.5e-19  Score=147.78  Aligned_cols=205  Identities=16%  Similarity=0.173  Sum_probs=127.5

Q ss_pred             CCCCccccchHHHhhccccEEEecCCCCCCCCCcccCCCCCCcEecccCCCCC-chhhcCCCCCccEEEeeccCCccccc
Q 036414            2 PSSYIDHSSEDIWMMQKLMHLNFGSITLPAPPKNYSSSLKNLIFISALHPSSC-TPDILSRLPTVQTLRISGDLSHYHSG   80 (252)
Q Consensus         2 ~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~~l~~~~~-~~~~l~~l~~L~~L~l~~~~~~~~~~   80 (252)
                      .++.+..+|. +..+++|++|++++|.+. .++. +..+++|++|+ ++.+.. .++.++.+++|++|++++|.   ...
T Consensus        52 ~~~~i~~~~~-~~~~~~L~~L~l~~n~i~-~~~~-~~~l~~L~~L~-L~~n~i~~~~~~~~l~~L~~L~l~~n~---i~~  124 (347)
T 4fmz_A           52 AGEKVASIQG-IEYLTNLEYLNLNGNQIT-DISP-LSNLVKLTNLY-IGTNKITDISALQNLTNLRELYLNEDN---ISD  124 (347)
T ss_dssp             CSSCCCCCTT-GGGCTTCCEEECCSSCCC-CCGG-GTTCTTCCEEE-CCSSCCCCCGGGTTCTTCSEEECTTSC---CCC
T ss_pred             eCCccccchh-hhhcCCccEEEccCCccc-cchh-hhcCCcCCEEE-ccCCcccCchHHcCCCcCCEEECcCCc---ccC
Confidence            3566677764 777888888888866554 3444 77888888888 777766 44567778888888888774   333


Q ss_pred             hhHhhhccCCCCeEEeeeccchhHHHHhhccccCCCCCCceEEeeecccCCCCchhhhcCCCCceEEeccCCccCceee-
Q 036414           81 VSKSLCELHKLECLKLANQGKMWQITRMILSEYKFPPSLTQLSLSNTELIEDPMPTLEKLPHLEVLKLKQNSYFERKLA-  159 (252)
Q Consensus        81 ~~~~l~~l~~L~~L~l~~~~~~~~~~~l~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~-  159 (252)
                      ++. +..+++|+.|++.++.....    ++.+..+ ++|+++++++|.+....+  ++.+++|++|++++|.+...... 
T Consensus       125 ~~~-~~~l~~L~~L~l~~n~~~~~----~~~~~~l-~~L~~L~l~~~~~~~~~~--~~~l~~L~~L~l~~n~l~~~~~~~  196 (347)
T 4fmz_A          125 ISP-LANLTKMYSLNLGANHNLSD----LSPLSNM-TGLNYLTVTESKVKDVTP--IANLTDLYSLSLNYNQIEDISPLA  196 (347)
T ss_dssp             CGG-GTTCTTCCEEECTTCTTCCC----CGGGTTC-TTCCEEECCSSCCCCCGG--GGGCTTCSEEECTTSCCCCCGGGG
T ss_pred             chh-hccCCceeEEECCCCCCccc----ccchhhC-CCCcEEEecCCCcCCchh--hccCCCCCEEEccCCccccccccc
Confidence            333 66777777777777433333    3345555 666666666665553222  45556666666655544331110 


Q ss_pred             ------------------ecCCCCCccccEEEecCCccccceeccccccccccceeeccCCCCCCChHHHHhccccceee
Q 036414          160 ------------------CVGCSSFPQLKILHLKSMLWLEEWTMGAGAMPKLESLILNPCAYLRKLPEELWRIKSLCKLE  221 (252)
Q Consensus       160 ------------------~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~  221 (252)
                                        .. ...+++|++|++++|. ++.++. ...+++|+.|++++|... .++ .+..+++|++|+
T Consensus       197 ~l~~L~~L~l~~n~l~~~~~-~~~~~~L~~L~l~~n~-l~~~~~-~~~l~~L~~L~l~~n~l~-~~~-~~~~l~~L~~L~  271 (347)
T 4fmz_A          197 SLTSLHYFTAYVNQITDITP-VANMTRLNSLKIGNNK-ITDLSP-LANLSQLTWLEIGTNQIS-DIN-AVKDLTKLKMLN  271 (347)
T ss_dssp             GCTTCCEEECCSSCCCCCGG-GGGCTTCCEEECCSSC-CCCCGG-GTTCTTCCEEECCSSCCC-CCG-GGTTCTTCCEEE
T ss_pred             CCCccceeecccCCCCCCch-hhcCCcCCEEEccCCc-cCCCcc-hhcCCCCCEEECCCCccC-CCh-hHhcCCCcCEEE
Confidence                              01 2345667777777776 665554 666777777777777654 333 456677777777


Q ss_pred             cccCC
Q 036414          222 LHWPQ  226 (252)
Q Consensus       222 l~~~~  226 (252)
                      ++++.
T Consensus       272 l~~n~  276 (347)
T 4fmz_A          272 VGSNQ  276 (347)
T ss_dssp             CCSSC
T ss_pred             ccCCc
Confidence            77664

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=99.82  E-value=1.6e-19  Score=148.86  Aligned_cols=209  Identities=17%  Similarity=0.170  Sum_probs=165.2

Q ss_pred             CCCCcccc-chHHHhhccccEEEecCCCCCCCCCcccCCCCCCcEecccCCCCC---chhhcCCCCCccEEEeeccCCcc
Q 036414            2 PSSYIDHS-SEDIWMMQKLMHLNFGSITLPAPPKNYSSSLKNLIFISALHPSSC---TPDILSRLPTVQTLRISGDLSHY   77 (252)
Q Consensus         2 ~~~~l~~l-p~~i~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~~l~~~~~---~~~~l~~l~~L~~L~l~~~~~~~   77 (252)
                      .++.++.+ |.++..+++|++|++++|.+. .+|..+.  ++|++|+ ++.+..   .+..+..+++|+.|++++|.-..
T Consensus        84 ~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~--~~L~~L~-l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~  159 (330)
T 1xku_A           84 INNKISKISPGAFAPLVKLERLYLSKNQLK-ELPEKMP--KTLQELR-VHENEITKVRKSVFNGLNQMIVVELGTNPLKS  159 (330)
T ss_dssp             CSSCCCCBCTTTTTTCTTCCEEECCSSCCS-BCCSSCC--TTCCEEE-CCSSCCCBBCHHHHTTCTTCCEEECCSSCCCG
T ss_pred             CCCcCCeeCHHHhcCCCCCCEEECCCCcCC-ccChhhc--ccccEEE-CCCCcccccCHhHhcCCccccEEECCCCcCCc
Confidence            45778888 778999999999999977765 5665544  7899999 888876   44558899999999999996222


Q ss_pred             ccchhHhhhccCCCCeEEeeeccchhHHHHhhc-cccCCCCCCceEEeeecccCCCCchhhhcCCCCceEEeccCCccCc
Q 036414           78 HSGVSKSLCELHKLECLKLANQGKMWQITRMIL-SEYKFPPSLTQLSLSNTELIEDPMPTLEKLPHLEVLKLKQNSYFER  156 (252)
Q Consensus        78 ~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~l~~-~~~~~~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~  156 (252)
                      ....+..+..+++|++|++.+ +.+..    +| .+  . ++|++|++++|.++...+..+..+++|+.|++++|.+...
T Consensus       160 ~~~~~~~~~~l~~L~~L~l~~-n~l~~----l~~~~--~-~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~  231 (330)
T 1xku_A          160 SGIENGAFQGMKKLSYIRIAD-TNITT----IPQGL--P-PSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAV  231 (330)
T ss_dssp             GGBCTTGGGGCTTCCEEECCS-SCCCS----CCSSC--C-TTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEE
T ss_pred             cCcChhhccCCCCcCEEECCC-Ccccc----CCccc--c-ccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCcee
Confidence            235567788999999999998 55555    55 22  2 8999999999999877788899999999999999887653


Q ss_pred             eeeecCCCCCccccEEEecCCccccceeccccccccccceeeccCCCCCCChH-HH------HhccccceeecccCC
Q 036414          157 KLACVGCSSFPQLKILHLKSMLWLEEWTMGAGAMPKLESLILNPCAYLRKLPE-EL------WRIKSLCKLELHWPQ  226 (252)
Q Consensus       157 ~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~~~~~~~~p~-~l------~~l~~L~~L~l~~~~  226 (252)
                      ... . +..+++|++|++++|+ ++.++..+..+++|+.|++++|.... ++. .+      ...++++.+++.+.+
T Consensus       232 ~~~-~-~~~l~~L~~L~L~~N~-l~~lp~~l~~l~~L~~L~l~~N~i~~-~~~~~f~~~~~~~~~~~l~~l~l~~N~  304 (330)
T 1xku_A          232 DNG-S-LANTPHLRELHLNNNK-LVKVPGGLADHKYIQVVYLHNNNISA-IGSNDFCPPGYNTKKASYSGVSLFSNP  304 (330)
T ss_dssp             CTT-T-GGGSTTCCEEECCSSC-CSSCCTTTTTCSSCCEEECCSSCCCC-CCTTSSSCSSCCTTSCCCSEEECCSSS
T ss_pred             Chh-h-ccCCCCCCEEECCCCc-CccCChhhccCCCcCEEECCCCcCCc-cChhhcCCcccccccccccceEeecCc
Confidence            221 2 5678999999999998 88888888899999999999998653 332 11      124788899998876

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=99.82  E-value=5.6e-20  Score=151.83  Aligned_cols=83  Identities=22%  Similarity=0.236  Sum_probs=40.6

Q ss_pred             CCceEEeeecccCCCCchhhhcCCCCceEEeccCCccCceeeecCCCCCccccEEEecCCccccceecccccccccccee
Q 036414          118 SLTQLSLSNTELIEDPMPTLEKLPHLEVLKLKQNSYFERKLACVGCSSFPQLKILHLKSMLWLEEWTMGAGAMPKLESLI  197 (252)
Q Consensus       118 ~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~  197 (252)
                      +|++|++++|.++...+..+..+++|+.|++++|.+...... . +..+++|++|++++|+ ++.++..++.+++|+.|+
T Consensus       194 ~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~-~-~~~l~~L~~L~L~~N~-l~~lp~~l~~l~~L~~L~  270 (332)
T 2ft3_A          194 TLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENG-S-LSFLPTLRELHLDNNK-LSRVPAGLPDLKLLQVVY  270 (332)
T ss_dssp             SCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCCTT-G-GGGCTTCCEEECCSSC-CCBCCTTGGGCTTCCEEE
T ss_pred             CCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCChh-H-hhCCCCCCEEECCCCc-CeecChhhhcCccCCEEE
Confidence            444444444444444444445555555555555544332111 1 3345555555555555 555555455555555555


Q ss_pred             eccCCC
Q 036414          198 LNPCAY  203 (252)
Q Consensus       198 l~~~~~  203 (252)
                      +++|..
T Consensus       271 l~~N~l  276 (332)
T 2ft3_A          271 LHTNNI  276 (332)
T ss_dssp             CCSSCC
T ss_pred             CCCCCC
Confidence            555543

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=99.82  E-value=3.4e-20  Score=164.76  Aligned_cols=106  Identities=15%  Similarity=0.098  Sum_probs=52.1

Q ss_pred             CCCceEEeeecccCC-CCchhhhcCCCCceEEeccCCccCceeeecCCCCCccccEEEecCCccccce-ecccccccccc
Q 036414          117 PSLTQLSLSNTELIE-DPMPTLEKLPHLEVLKLKQNSYFERKLACVGCSSFPQLKILHLKSMLWLEEW-TMGAGAMPKLE  194 (252)
Q Consensus       117 ~~L~~l~l~~~~~~~-~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~-~~~~~~l~~L~  194 (252)
                      ++|++|++++|.+.+ ..+..++.+++|+.|++++|.+.+... .. +.++++|++|++++|+ +.++ +..++.+++|+
T Consensus       448 ~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~~-~~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~  524 (606)
T 3vq2_A          448 TSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISW-GV-FDTLHRLQLLNMSHNN-LLFLDSSHYNQLYSLS  524 (606)
T ss_dssp             TTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECT-TT-TTTCTTCCEEECCSSC-CSCEEGGGTTTCTTCC
T ss_pred             CCCCEEECCCCcCCCcchHHhhccCCCCCEEECCCCcCCccCh-hh-hcccccCCEEECCCCc-CCCcCHHHccCCCcCC
Confidence            444444444444432 133334444445555554444432111 12 3455555555555555 4443 44455566666


Q ss_pred             ceeeccCCCCCCChHHHHhcc-ccceeecccCC
Q 036414          195 SLILNPCAYLRKLPEELWRIK-SLCKLELHWPQ  226 (252)
Q Consensus       195 ~L~l~~~~~~~~~p~~l~~l~-~L~~L~l~~~~  226 (252)
                      .|++++|... .+|..+..++ +|+++++.+++
T Consensus       525 ~L~l~~N~l~-~~p~~~~~l~~~L~~l~l~~N~  556 (606)
T 3vq2_A          525 TLDCSFNRIE-TSKGILQHFPKSLAFFNLTNNS  556 (606)
T ss_dssp             EEECTTSCCC-CEESCGGGSCTTCCEEECCSCC
T ss_pred             EEECCCCcCc-ccCHhHhhhcccCcEEEccCCC
Confidence            6666666543 4555555554 46666666543

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=99.81  E-value=2.7e-19  Score=143.54  Aligned_cols=185  Identities=22%  Similarity=0.233  Sum_probs=87.7

Q ss_pred             CCccccchHHHhhccccEEEecCCCCCCCCCcccCCCCCCcEecccCCCCC--chhh-cCCCCCccEEEeeccCCccccc
Q 036414            4 SYIDHSSEDIWMMQKLMHLNFGSITLPAPPKNYSSSLKNLIFISALHPSSC--TPDI-LSRLPTVQTLRISGDLSHYHSG   80 (252)
Q Consensus         4 ~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~~l~~~~~--~~~~-l~~l~~L~~L~l~~~~~~~~~~   80 (252)
                      +.++.+|..+.  .++++|++++|.+....+..+..+++|++|+ ++.+..  ++.. +..+++|++|++++|.  ....
T Consensus        26 ~~l~~ip~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~-l~~n~l~~i~~~~~~~l~~L~~L~l~~n~--l~~~  100 (270)
T 2o6q_A           26 KKLTAIPSNIP--ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLY-LNDNKLQTLPAGIFKELKNLETLWVTDNK--LQAL  100 (270)
T ss_dssp             SCCSSCCSCCC--TTCSEEECCSSCCSCCCTTSSSSCTTCCEEE-CCSSCCSCCCTTTTSSCTTCCEEECCSSC--CCCC
T ss_pred             CCCCccCCCCC--CCCCEEECcCCCCCeeCHHHhcCCCCCCEEE-CCCCccCeeChhhhcCCCCCCEEECCCCc--CCcC
Confidence            34445554332  3455555554444433333455555555555 554443  2222 3445555555555553  2222


Q ss_pred             hhHhhhccCCCCeEEeeeccchhHHHHhhc--cccCCCCCCceEEeeecccCCCCchhhhcCCCCceEEeccCCccCcee
Q 036414           81 VSKSLCELHKLECLKLANQGKMWQITRMIL--SEYKFPPSLTQLSLSNTELIEDPMPTLEKLPHLEVLKLKQNSYFERKL  158 (252)
Q Consensus        81 ~~~~l~~l~~L~~L~l~~~~~~~~~~~l~~--~~~~~~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~  158 (252)
                      .+..+..+++|++|++.+ +.+..    ++  .+..+ ++|++|++++|.+....+..++.+++|+.|++++|.+.....
T Consensus       101 ~~~~~~~l~~L~~L~l~~-n~l~~----~~~~~~~~l-~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~  174 (270)
T 2o6q_A          101 PIGVFDQLVNLAELRLDR-NQLKS----LPPRVFDSL-TKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVPE  174 (270)
T ss_dssp             CTTTTTTCSSCCEEECCS-SCCCC----CCTTTTTTC-TTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCT
T ss_pred             CHhHcccccCCCEEECCC-CccCe----eCHHHhCcC-cCCCEEECCCCcCCccCHhHccCCcccceeEecCCcCcEeCh
Confidence            223344555555555555 33322    22  23444 555555555555554444445555555555555554433211


Q ss_pred             eecCCCCCccccEEEecCCccccceecc-ccccccccceeeccCC
Q 036414          159 ACVGCSSFPQLKILHLKSMLWLEEWTMG-AGAMPKLESLILNPCA  202 (252)
Q Consensus       159 ~~~~~~~~~~L~~L~l~~~~~l~~~~~~-~~~l~~L~~L~l~~~~  202 (252)
                      . . +..+++|++|++++|+ ++.++.. ++.+++|+.|++++|+
T Consensus       175 ~-~-~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~l~~N~  216 (270)
T 2o6q_A          175 G-A-FDKLTELKTLKLDNNQ-LKRVPEGAFDSLEKLKMLQLQENP  216 (270)
T ss_dssp             T-T-TTTCTTCCEEECCSSC-CSCCCTTTTTTCTTCCEEECCSSC
T ss_pred             h-H-hccCCCcCEEECCCCc-CCcCCHHHhccccCCCEEEecCCC
Confidence            1 1 3345555555555554 4444332 3445555555555554

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=99.81  E-value=5.9e-20  Score=168.24  Aligned_cols=203  Identities=13%  Similarity=0.073  Sum_probs=144.8

Q ss_pred             cchHHH--hhccccEEEecCCCCCCCCCcccCCCCCCcEecccCCCC-C----chhhcCC-------CCCccEEEeeccC
Q 036414            9 SSEDIW--MMQKLMHLNFGSITLPAPPKNYSSSLKNLIFISALHPSS-C----TPDILSR-------LPTVQTLRISGDL   74 (252)
Q Consensus         9 lp~~i~--~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~~l~~~~-~----~~~~l~~-------l~~L~~L~l~~~~   74 (252)
                      +|.+++  ++++|++|++++|.+...+|..+.++++|++|+ ++.+. +    +|..++.       +++|+.|++++|.
T Consensus       481 iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~-Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~  559 (876)
T 4ecn_A          481 ENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLN-IACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNN  559 (876)
T ss_dssp             TTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCEEE-CTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSC
T ss_pred             CChhhhhccCCCCCEEECcCCCCCccChHHHhCCCCCCEEE-CcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCc
Confidence            899877  999999999998988889999999999999999 98887 3    4554544       4599999999995


Q ss_pred             CccccchhH--hhhccCCCCeEEeeeccchhHHHHhhccccCCCCCCceEEeeecccCCCCchhhhcCCC-CceEEeccC
Q 036414           75 SHYHSGVSK--SLCELHKLECLKLANQGKMWQITRMILSEYKFPPSLTQLSLSNTELIEDPMPTLEKLPH-LEVLKLKQN  151 (252)
Q Consensus        75 ~~~~~~~~~--~l~~l~~L~~L~l~~~~~~~~~~~l~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~~~~-L~~L~l~~~  151 (252)
                        . ..+|.  .+..+++|+.|++++ +.+..    +|.+..+ ++|+.|++++|.+. ..|..+..+++ |+.|++++|
T Consensus       560 --L-~~ip~~~~l~~L~~L~~L~Ls~-N~l~~----lp~~~~L-~~L~~L~Ls~N~l~-~lp~~l~~l~~~L~~L~Ls~N  629 (876)
T 4ecn_A          560 --L-EEFPASASLQKMVKLGLLDCVH-NKVRH----LEAFGTN-VKLTDLKLDYNQIE-EIPEDFCAFTDQVEGLGFSHN  629 (876)
T ss_dssp             --C-CBCCCHHHHTTCTTCCEEECTT-SCCCB----CCCCCTT-SEESEEECCSSCCS-CCCTTSCEECTTCCEEECCSS
T ss_pred             --C-CccCChhhhhcCCCCCEEECCC-CCccc----chhhcCC-CcceEEECcCCccc-cchHHHhhccccCCEEECcCC
Confidence              3 37888  899999999999998 55556    7777777 89999999999888 67777888888 999999888


Q ss_pred             CccCceeeecCCCCCccccEEEecCCccccce-e---cccc--ccccccceeeccCCCCCCChHHH-Hhccccceeeccc
Q 036414          152 SYFERKLACVGCSSFPQLKILHLKSMLWLEEW-T---MGAG--AMPKLESLILNPCAYLRKLPEEL-WRIKSLCKLELHW  224 (252)
Q Consensus       152 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~-~---~~~~--~l~~L~~L~l~~~~~~~~~p~~l-~~l~~L~~L~l~~  224 (252)
                      .+......+. ....++|+.|++++|. +... +   ...+  .+++|+.|++++|... .+|..+ ..+++|+.|++++
T Consensus       630 ~L~~lp~~~~-~~~~~~L~~L~Ls~N~-l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L~-~lp~~~~~~l~~L~~L~Ls~  706 (876)
T 4ecn_A          630 KLKYIPNIFN-AKSVYVMGSVDFSYNK-IGSEGRNISCSMDDYKGINASTVTLSYNEIQ-KFPTELFATGSPISTIILSN  706 (876)
T ss_dssp             CCCSCCSCCC-TTCSSCEEEEECCSSC-TTTTSSSCSSCTTTCCCCCEEEEECCSSCCC-SCCHHHHHTTCCCSEEECCS
T ss_pred             CCCcCchhhh-ccccCCCCEEECcCCc-CCCccccchhhhccccCCCcCEEEccCCcCC-ccCHHHHccCCCCCEEECCC
Confidence            7763221111 1222347777777666 4321 1   1111  2235566666665543 455443 2455555555554


Q ss_pred             C
Q 036414          225 P  225 (252)
Q Consensus       225 ~  225 (252)
                      +
T Consensus       707 N  707 (876)
T 4ecn_A          707 N  707 (876)
T ss_dssp             C
T ss_pred             C
Confidence            4

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=99.81  E-value=2e-19  Score=164.77  Aligned_cols=206  Identities=12%  Similarity=0.107  Sum_probs=104.1

Q ss_pred             cchHHHhhc-------cccEEEecCCCCCCCCCc--ccCCCCCCcEecccCCCCC--chhhcCCCCCccEEEeeccCCcc
Q 036414            9 SSEDIWMMQ-------KLMHLNFGSITLPAPPKN--YSSSLKNLIFISALHPSSC--TPDILSRLPTVQTLRISGDLSHY   77 (252)
Q Consensus         9 lp~~i~~l~-------~L~~L~l~~~~~~~~~~~--~l~~l~~L~~L~~l~~~~~--~~~~l~~l~~L~~L~l~~~~~~~   77 (252)
                      +|..++++.       +|++|++++|.+. .+|.  .+.++++|+.|+ ++.|.+  +| .++.+++|+.|++++|.   
T Consensus       533 iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~l~~L~~L~~L~-Ls~N~l~~lp-~~~~L~~L~~L~Ls~N~---  606 (876)
T 4ecn_A          533 LKADWTRLADDEDTGPKIQIFYMGYNNLE-EFPASASLQKMVKLGLLD-CVHNKVRHLE-AFGTNVKLTDLKLDYNQ---  606 (876)
T ss_dssp             HHHHHHHHHHCTTTTTTCCEEECCSSCCC-BCCCHHHHTTCTTCCEEE-CTTSCCCBCC-CCCTTSEESEEECCSSC---
T ss_pred             chHHHHhhhhcccccCCccEEEeeCCcCC-ccCChhhhhcCCCCCEEE-CCCCCcccch-hhcCCCcceEEECcCCc---
Confidence            555555554       5666666655544 4555  555556666665 555544  33 45555555555555553   


Q ss_pred             ccchhHhhhccCC-CCeEEeeeccchhHH------------HHh----------hccc----c--CCCCCCceEEeeecc
Q 036414           78 HSGVSKSLCELHK-LECLKLANQGKMWQI------------TRM----------ILSE----Y--KFPPSLTQLSLSNTE  128 (252)
Q Consensus        78 ~~~~~~~l~~l~~-L~~L~l~~~~~~~~~------------~~l----------~~~~----~--~~~~~L~~l~l~~~~  128 (252)
                      ...+|..+..+++ |+.|++++ +.+..+            +.|          +|.+    .  .. ++|+.|++++|.
T Consensus       607 l~~lp~~l~~l~~~L~~L~Ls~-N~L~~lp~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~-~~L~~L~Ls~N~  684 (876)
T 4ecn_A          607 IEEIPEDFCAFTDQVEGLGFSH-NKLKYIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKG-INASTVTLSYNE  684 (876)
T ss_dssp             CSCCCTTSCEECTTCCEEECCS-SCCCSCCSCCCTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCC-CCEEEEECCSSC
T ss_pred             cccchHHHhhccccCCEEECcC-CCCCcCchhhhccccCCCCEEECcCCcCCCccccchhhhccccC-CCcCEEEccCCc
Confidence            2245555555555 55555555 222120            000          1211    1  11 356666666666


Q ss_pred             cCCCCchhhhcCCCCceEEeccCCccCceeeec-C----CCCCccccEEEecCCccccceecccc--ccccccceeeccC
Q 036414          129 LIEDPMPTLEKLPHLEVLKLKQNSYFERKLACV-G----CSSFPQLKILHLKSMLWLEEWTMGAG--AMPKLESLILNPC  201 (252)
Q Consensus       129 ~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~-~----~~~~~~L~~L~l~~~~~l~~~~~~~~--~l~~L~~L~l~~~  201 (252)
                      +...+...+..+++|+.|++++|.+........ +    ..++++|+.|++++|+ ++.++....  .+++|+.|++++|
T Consensus       685 L~~lp~~~~~~l~~L~~L~Ls~N~L~~ip~~~~~~~~~~l~nl~~L~~L~Ls~N~-L~~lp~~l~~~~l~~L~~L~Ls~N  763 (876)
T 4ecn_A          685 IQKFPTELFATGSPISTIILSNNLMTSIPENSLKPKDGNYKNTYLLTTIDLRFNK-LTSLSDDFRATTLPYLSNMDVSYN  763 (876)
T ss_dssp             CCSCCHHHHHTTCCCSEEECCSCCCSCCCTTSSSCTTSCCTTGGGCCEEECCSSC-CCCCCGGGSTTTCTTCCEEECCSS
T ss_pred             CCccCHHHHccCCCCCEEECCCCcCCccChHHhccccccccccCCccEEECCCCC-CccchHHhhhccCCCcCEEEeCCC
Confidence            663333333466777777776666542111100 0    0122366666666665 555555444  5666666666666


Q ss_pred             CCCCCChHHHHhccccceeeccc
Q 036414          202 AYLRKLPEELWRIKSLCKLELHW  224 (252)
Q Consensus       202 ~~~~~~p~~l~~l~~L~~L~l~~  224 (252)
                      .... +|..+..+++|+.|++++
T Consensus       764 ~L~~-lp~~l~~L~~L~~L~Ls~  785 (876)
T 4ecn_A          764 CFSS-FPTQPLNSSQLKAFGIRH  785 (876)
T ss_dssp             CCSS-CCCGGGGCTTCCEEECCC
T ss_pred             CCCc-cchhhhcCCCCCEEECCC
Confidence            5443 555555566666666543

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=99.81  E-value=1.6e-19  Score=146.40  Aligned_cols=195  Identities=19%  Similarity=0.214  Sum_probs=122.5

Q ss_pred             HhhccccEEEecCCCCCCCCCcccCCCCCCcEecccCCCCC---chhhcCCCCCccEEEeeccCCccccchhHhhhccCC
Q 036414           14 WMMQKLMHLNFGSITLPAPPKNYSSSLKNLIFISALHPSSC---TPDILSRLPTVQTLRISGDLSHYHSGVSKSLCELHK   90 (252)
Q Consensus        14 ~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~~l~~~~~---~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~   90 (252)
                      .+++++++++++++.+. .+|..+.  ++++.|+ ++.+.+   .+..+..+++|++|++++|.   ...++.. ..+++
T Consensus         7 ~~l~~l~~l~~~~~~l~-~ip~~~~--~~l~~L~-L~~N~l~~~~~~~~~~l~~L~~L~L~~n~---l~~~~~~-~~l~~   78 (290)
T 1p9a_G            7 SKVASHLEVNCDKRNLT-ALPPDLP--KDTTILH-LSENLLYTFSLATLMPYTRLTQLNLDRAE---LTKLQVD-GTLPV   78 (290)
T ss_dssp             ECSTTCCEEECTTSCCS-SCCSCCC--TTCCEEE-CTTSCCSEEEGGGGTTCTTCCEEECTTSC---CCEEECC-SCCTT
T ss_pred             cccCCccEEECCCCCCC-cCCCCCC--CCCCEEE-cCCCcCCccCHHHhhcCCCCCEEECCCCc---cCcccCC-CCCCc
Confidence            44556777777754443 4554443  5677777 666665   34456677777777777774   2333322 56677


Q ss_pred             CCeEEeeeccchhHHHHhhc-cccCCCCCCceEEeeecccCCCCchhhhcCCCCceEEeccCCccCceeeecCCCCCccc
Q 036414           91 LECLKLANQGKMWQITRMIL-SEYKFPPSLTQLSLSNTELIEDPMPTLEKLPHLEVLKLKQNSYFERKLACVGCSSFPQL  169 (252)
Q Consensus        91 L~~L~l~~~~~~~~~~~l~~-~~~~~~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L  169 (252)
                      |++|++++ +.+..    +| .+..+ ++|++|++++|+++...+..++.+++|+.|++++|.+...... . +..+++|
T Consensus        79 L~~L~Ls~-N~l~~----l~~~~~~l-~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~-~-~~~l~~L  150 (290)
T 1p9a_G           79 LGTLDLSH-NQLQS----LPLLGQTL-PALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPG-L-LTPTPKL  150 (290)
T ss_dssp             CCEEECCS-SCCSS----CCCCTTTC-TTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTT-T-TTTCTTC
T ss_pred             CCEEECCC-CcCCc----CchhhccC-CCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChh-h-cccccCC
Confidence            77777776 55555    56 55566 7777777777777765556677777777777777766542221 2 4566777


Q ss_pred             cEEEecCCccccceecc-ccccccccceeeccCCCCCCChHHHHhccccceeecccCC
Q 036414          170 KILHLKSMLWLEEWTMG-AGAMPKLESLILNPCAYLRKLPEELWRIKSLCKLELHWPQ  226 (252)
Q Consensus       170 ~~L~l~~~~~l~~~~~~-~~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~l~~~~  226 (252)
                      +.|++++|+ ++.++.. +..+++|+.|++++|... .+|.++...++|+.+++.+++
T Consensus       151 ~~L~L~~N~-l~~l~~~~~~~l~~L~~L~L~~N~l~-~ip~~~~~~~~L~~l~L~~Np  206 (290)
T 1p9a_G          151 EKLSLANNN-LTELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNP  206 (290)
T ss_dssp             CEEECTTSC-CSCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCCCSEEECCSCC
T ss_pred             CEEECCCCc-CCccCHHHhcCcCCCCEEECCCCcCC-ccChhhcccccCCeEEeCCCC
Confidence            777777777 6666543 355677777777776653 566666666677777776544

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=99.81  E-value=1.6e-19  Score=149.05  Aligned_cols=205  Identities=17%  Similarity=0.149  Sum_probs=122.2

Q ss_pred             CCccccchHHHhhccccEEEecCCCCCCCCCcccCCCCCCcEecccCCCCC---chhhcCCCCCccEEEeeccCCccccc
Q 036414            4 SYIDHSSEDIWMMQKLMHLNFGSITLPAPPKNYSSSLKNLIFISALHPSSC---TPDILSRLPTVQTLRISGDLSHYHSG   80 (252)
Q Consensus         4 ~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~~l~~~~~---~~~~l~~l~~L~~L~l~~~~~~~~~~   80 (252)
                      +.++++|..+.  ++|++|++++|.+....+..+.++++|++|+ ++.+..   .+..++.+++|++|++++|.   ...
T Consensus        43 ~~l~~ip~~~~--~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~-L~~n~l~~~~~~~~~~l~~L~~L~L~~n~---l~~  116 (332)
T 2ft3_A           43 LGLKAVPKEIS--PDTTLLDLQNNDISELRKDDFKGLQHLYALV-LVNNKISKIHEKAFSPLRKLQKLYISKNH---LVE  116 (332)
T ss_dssp             SCCSSCCSCCC--TTCCEEECCSSCCCEECTTTTTTCTTCCEEE-CCSSCCCEECGGGSTTCTTCCEEECCSSC---CCS
T ss_pred             CCccccCCCCC--CCCeEEECCCCcCCccCHhHhhCCCCCcEEE-CCCCccCccCHhHhhCcCCCCEEECCCCc---CCc
Confidence            45555665442  4566666665555444444566666666666 655554   34456666666666666663   223


Q ss_pred             hhHhhhccCCCCeEEeeeccchhHHHHhhc--cccCCCCCCceEEeeecccCC--CCchhhhc-----------------
Q 036414           81 VSKSLCELHKLECLKLANQGKMWQITRMIL--SEYKFPPSLTQLSLSNTELIE--DPMPTLEK-----------------  139 (252)
Q Consensus        81 ~~~~l~~l~~L~~L~l~~~~~~~~~~~l~~--~~~~~~~~L~~l~l~~~~~~~--~~~~~l~~-----------------  139 (252)
                      +|..+.  ++|++|++.+ +.+..    ++  .+..+ ++|+.|++++|.++.  ..+..+..                 
T Consensus       117 l~~~~~--~~L~~L~l~~-n~i~~----~~~~~~~~l-~~L~~L~l~~n~l~~~~~~~~~~~~l~L~~L~l~~n~l~~l~  188 (332)
T 2ft3_A          117 IPPNLP--SSLVELRIHD-NRIRK----VPKGVFSGL-RNMNCIEMGGNPLENSGFEPGAFDGLKLNYLRISEAKLTGIP  188 (332)
T ss_dssp             CCSSCC--TTCCEEECCS-SCCCC----CCSGGGSSC-SSCCEEECCSCCCBGGGSCTTSSCSCCCSCCBCCSSBCSSCC
T ss_pred             cCcccc--ccCCEEECCC-CccCc----cCHhHhCCC-ccCCEEECCCCccccCCCCcccccCCccCEEECcCCCCCccC
Confidence            333322  4555555555 33322    23  23444 555555555554421  12222221                 


Q ss_pred             ---CCCCceEEeccCCccCceeeecCCCCCccccEEEecCCccccceec-cccccccccceeeccCCCCCCChHHHHhcc
Q 036414          140 ---LPHLEVLKLKQNSYFERKLACVGCSSFPQLKILHLKSMLWLEEWTM-GAGAMPKLESLILNPCAYLRKLPEELWRIK  215 (252)
Q Consensus       140 ---~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~-~~~~l~~L~~L~l~~~~~~~~~p~~l~~l~  215 (252)
                         .++|++|++++|.+..... .. +..+++|++|++++|. ++.++. .++.+++|+.|++++|... .+|..+..++
T Consensus       189 ~~~~~~L~~L~l~~n~i~~~~~-~~-l~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~  264 (332)
T 2ft3_A          189 KDLPETLNELHLDHNKIQAIEL-ED-LLRYSKLYRLGLGHNQ-IRMIENGSLSFLPTLRELHLDNNKLS-RVPAGLPDLK  264 (332)
T ss_dssp             SSSCSSCSCCBCCSSCCCCCCT-TS-STTCTTCSCCBCCSSC-CCCCCTTGGGGCTTCCEEECCSSCCC-BCCTTGGGCT
T ss_pred             ccccCCCCEEECCCCcCCccCH-HH-hcCCCCCCEEECCCCc-CCcCChhHhhCCCCCCEEECCCCcCe-ecChhhhcCc
Confidence               1467777777666654322 23 5678889999999888 776643 5678888999999888765 7888788888


Q ss_pred             ccceeecccCC
Q 036414          216 SLCKLELHWPQ  226 (252)
Q Consensus       216 ~L~~L~l~~~~  226 (252)
                      +|++|+++++.
T Consensus       265 ~L~~L~l~~N~  275 (332)
T 2ft3_A          265 LLQVVYLHTNN  275 (332)
T ss_dssp             TCCEEECCSSC
T ss_pred             cCCEEECCCCC
Confidence            99999888764

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=99.80  E-value=1.1e-19  Score=161.52  Aligned_cols=210  Identities=20%  Similarity=0.121  Sum_probs=128.3

Q ss_pred             CCccccchHHHhhccccEEEecCCCCCCCCCcccCCCCCCcEecccCCCCC-chhhcCCCCCccEEEeeccCCccccc--
Q 036414            4 SYIDHSSEDIWMMQKLMHLNFGSITLPAPPKNYSSSLKNLIFISALHPSSC-TPDILSRLPTVQTLRISGDLSHYHSG--   80 (252)
Q Consensus         4 ~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~~l~~~~~-~~~~l~~l~~L~~L~l~~~~~~~~~~--   80 (252)
                      +.++.+| .+..+++|++|++++|.+ ..+|. + .+++|++|+ ++.+.. ....++.+++|++|++++|.  ....  
T Consensus       295 ~~~~~l~-~l~~~~~L~~L~l~~n~l-~~lp~-~-~l~~L~~L~-l~~n~~~~~~~~~~l~~L~~L~ls~n~--l~~~~~  367 (606)
T 3vq2_A          295 VSIKYLE-DVPKHFKWQSLSIIRCQL-KQFPT-L-DLPFLKSLT-LTMNKGSISFKKVALPSLSYLDLSRNA--LSFSGC  367 (606)
T ss_dssp             CCCCCCC-CCCTTCCCSEEEEESCCC-SSCCC-C-CCSSCCEEE-EESCSSCEECCCCCCTTCCEEECCSSC--EEEEEE
T ss_pred             ccchhhh-hccccccCCEEEcccccC-ccccc-C-CCCccceee-ccCCcCccchhhccCCCCCEEECcCCc--cCCCcc
Confidence            3445555 555666666666665555 44552 3 555566655 554422 22234445555555555553  1111  


Q ss_pred             hhHhhhccCCCCeEEeeec----------------------cchhHHHHhhc--cccCCCCCCceEEeeecccCCCCchh
Q 036414           81 VSKSLCELHKLECLKLANQ----------------------GKMWQITRMIL--SEYKFPPSLTQLSLSNTELIEDPMPT  136 (252)
Q Consensus        81 ~~~~l~~l~~L~~L~l~~~----------------------~~~~~~~~l~~--~~~~~~~~L~~l~l~~~~~~~~~~~~  136 (252)
                      .+..+..+++|++|++++|                      +.+...   .+  .+..+ ++|++|++++|.+....+..
T Consensus       368 ~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~---~~~~~~~~l-~~L~~L~l~~n~l~~~~~~~  443 (606)
T 3vq2_A          368 CSYSDLGTNSLRHLDLSFNGAIIMSANFMGLEELQHLDFQHSTLKRV---TEFSAFLSL-EKLLYLDISYTNTKIDFDGI  443 (606)
T ss_dssp             CCHHHHCCSCCCEEECCSCSEEEECCCCTTCTTCCEEECTTSEEEST---TTTTTTTTC-TTCCEEECTTSCCEECCTTT
T ss_pred             hhhhhccCCcccEeECCCCccccchhhccCCCCCCeeECCCCccCCc---cChhhhhcc-ccCCEEECcCCCCCccchhh
Confidence            1344444444555544442                      222110   12  34555 77777777777776666677


Q ss_pred             hhcCCCCceEEeccCCccCceeeecCCCCCccccEEEecCCccccce-eccccccccccceeeccCCCCCCChHHHHhcc
Q 036414          137 LEKLPHLEVLKLKQNSYFERKLACVGCSSFPQLKILHLKSMLWLEEW-TMGAGAMPKLESLILNPCAYLRKLPEELWRIK  215 (252)
Q Consensus       137 l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~-~~~~~~l~~L~~L~l~~~~~~~~~p~~l~~l~  215 (252)
                      ++.+++|++|++++|.+.+...+.. ++.+++|++|++++|. ++++ +..++.+++|+.|++++|...+..|..+..++
T Consensus       444 ~~~l~~L~~L~l~~n~l~~~~~~~~-~~~l~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~  521 (606)
T 3vq2_A          444 FLGLTSLNTLKMAGNSFKDNTLSNV-FANTTNLTFLDLSKCQ-LEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLY  521 (606)
T ss_dssp             TTTCTTCCEEECTTCEEGGGEECSC-CTTCTTCCEEECTTSC-CCEECTTTTTTCTTCCEEECCSSCCSCEEGGGTTTCT
T ss_pred             hcCCCCCCEEECCCCcCCCcchHHh-hccCCCCCEEECCCCc-CCccChhhhcccccCCEEECCCCcCCCcCHHHccCCC
Confidence            7777788888887777665434434 6778888888888887 6665 45567888888888888877665577788888


Q ss_pred             ccceeecccCC
Q 036414          216 SLCKLELHWPQ  226 (252)
Q Consensus       216 ~L~~L~l~~~~  226 (252)
                      +|++|+++++.
T Consensus       522 ~L~~L~l~~N~  532 (606)
T 3vq2_A          522 SLSTLDCSFNR  532 (606)
T ss_dssp             TCCEEECTTSC
T ss_pred             cCCEEECCCCc
Confidence            88888888774

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=99.80  E-value=3.1e-19  Score=140.62  Aligned_cols=204  Identities=17%  Similarity=0.115  Sum_probs=159.5

Q ss_pred             CccccchHHHhhccccEEEecCCCCCCCCCcccCCCCCCcEecccCCCC-C--ch-hhcCCCCCccEEEeec-cCCcccc
Q 036414            5 YIDHSSEDIWMMQKLMHLNFGSITLPAPPKNYSSSLKNLIFISALHPSS-C--TP-DILSRLPTVQTLRISG-DLSHYHS   79 (252)
Q Consensus         5 ~l~~lp~~i~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~~l~~~~-~--~~-~~l~~l~~L~~L~l~~-~~~~~~~   79 (252)
                      .++++|. +.  .+|++|++++|.+....+..+.++++|++|+ ++.+. .  ++ ..+..+++|++|++++ +.  ...
T Consensus        22 ~l~~ip~-~~--~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~-l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~--l~~   95 (239)
T 2xwt_C           22 DIQRIPS-LP--PSTQTLKLIETHLRTIPSHAFSNLPNISRIY-VSIDVTLQQLESHSFYNLSKVTHIEIRNTRN--LTY   95 (239)
T ss_dssp             SCSSCCC-CC--TTCCEEEEESCCCSEECTTTTTTCTTCCEEE-EECCSSCCEECTTTEESCTTCCEEEEEEETT--CCE
T ss_pred             CccccCC-CC--CcccEEEEeCCcceEECHHHccCCCCCcEEe-CCCCCCcceeCHhHcCCCcCCcEEECCCCCC--eeE
Confidence            4777887 43  3899999998887665566789999999999 88886 5  33 3588899999999998 64  333


Q ss_pred             chhHhhhccCCCCeEEeeeccchhHHHHhhccccCCCCCCc---eEEeeec-ccCCCCchhhhcCCCCc-eEEeccCCcc
Q 036414           80 GVSKSLCELHKLECLKLANQGKMWQITRMILSEYKFPPSLT---QLSLSNT-ELIEDPMPTLEKLPHLE-VLKLKQNSYF  154 (252)
Q Consensus        80 ~~~~~l~~l~~L~~L~l~~~~~~~~~~~l~~~~~~~~~~L~---~l~l~~~-~~~~~~~~~l~~~~~L~-~L~l~~~~~~  154 (252)
                      ..+..+..+++|++|++.+ +.+..    +|.+..+ ++|+   ++++++| .++...+..+..+++|+ .|++++|.+.
T Consensus        96 i~~~~f~~l~~L~~L~l~~-n~l~~----lp~~~~l-~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~  169 (239)
T 2xwt_C           96 IDPDALKELPLLKFLGIFN-TGLKM----FPDLTKV-YSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFT  169 (239)
T ss_dssp             ECTTSEECCTTCCEEEEEE-ECCCS----CCCCTTC-CBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCC
T ss_pred             cCHHHhCCCCCCCEEeCCC-CCCcc----ccccccc-cccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCc
Confidence            3345678899999999999 56656    6766666 7887   9999999 88866777789999999 9999998876


Q ss_pred             CceeeecCCCCCccccEEEecCCccccceec-ccccc-ccccceeeccCCCCCCChHHHHhccccceeecccCC
Q 036414          155 ERKLACVGCSSFPQLKILHLKSMLWLEEWTM-GAGAM-PKLESLILNPCAYLRKLPEELWRIKSLCKLELHWPQ  226 (252)
Q Consensus       155 ~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~-~~~~l-~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~l~~~~  226 (252)
                      .  ++.. ....++|+.|++++|+.++.++. .++.+ ++|+.|++++|... .+|..  .+++|+.|++.++.
T Consensus       170 ~--i~~~-~~~~~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~-~l~~~--~~~~L~~L~l~~~~  237 (239)
T 2xwt_C          170 S--VQGY-AFNGTKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVT-ALPSK--GLEHLKELIARNTW  237 (239)
T ss_dssp             E--ECTT-TTTTCEEEEEECTTCTTCCEECTTTTTTCSBCCSEEECTTCCCC-CCCCT--TCTTCSEEECTTC-
T ss_pred             c--cCHh-hcCCCCCCEEEcCCCCCcccCCHHHhhccccCCcEEECCCCccc-cCChh--HhccCceeeccCcc
Confidence            3  2212 22338999999999955888754 46778 99999999998764 67654  68899999998764

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.80  E-value=9.8e-20  Score=157.87  Aligned_cols=205  Identities=17%  Similarity=0.118  Sum_probs=150.9

Q ss_pred             cccchHHHhhc----cccEEEecCCCCCCCCCcccCCCCCCcEecccCCCCC-chhhcCCCCCccEEEeeccCCccccch
Q 036414            7 DHSSEDIWMMQ----KLMHLNFGSITLPAPPKNYSSSLKNLIFISALHPSSC-TPDILSRLPTVQTLRISGDLSHYHSGV   81 (252)
Q Consensus         7 ~~lp~~i~~l~----~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~~l~~~~~-~~~~l~~l~~L~~L~l~~~~~~~~~~~   81 (252)
                      ..+|..+..+.    +|++|++++|.+....|..+..+++|++|+ ++.|.+ ....++.+++|++|++++|.   ...+
T Consensus        20 ~~l~~~l~~l~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~-Ls~N~l~~~~~l~~l~~L~~L~Ls~N~---l~~l   95 (487)
T 3oja_A           20 SSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLN-LSSNVLYETLDLESLSTLRTLDLNNNY---VQEL   95 (487)
T ss_dssp             TTHHHHHHTTSTTGGGCCEEECCSSCCCCCCGGGGTTCTTCCEEE-CTTSCCEEEEECTTCTTCCEEECCSSE---EEEE
T ss_pred             hhhHHHHHHhcccCCCccEEEeeCCcCCCCCHHHHhCCCCCCEEE-eeCCCCCCCcccccCCCCCEEEecCCc---CCCC
Confidence            45677666555    789999998877776677888888999998 888877 22237888888888888874   2222


Q ss_pred             hHh-----------------hhccCCCCeEEeeeccchhHHHHhhc-cccCCCCCCceEEeeecccCCCCchhhh-cCCC
Q 036414           82 SKS-----------------LCELHKLECLKLANQGKMWQITRMIL-SEYKFPPSLTQLSLSNTELIEDPMPTLE-KLPH  142 (252)
Q Consensus        82 ~~~-----------------l~~l~~L~~L~l~~~~~~~~~~~l~~-~~~~~~~~L~~l~l~~~~~~~~~~~~l~-~~~~  142 (252)
                      +..                 ...+++|+.|++++ +.+..+   .| .+..+ ++|++|++++|.++...+..+. .+++
T Consensus        96 ~~~~~L~~L~L~~N~l~~~~~~~l~~L~~L~L~~-N~l~~~---~~~~~~~l-~~L~~L~Ls~N~l~~~~~~~l~~~l~~  170 (487)
T 3oja_A           96 LVGPSIETLHAANNNISRVSCSRGQGKKNIYLAN-NKITML---RDLDEGCR-SRVQYLDLKLNEIDTVNFAELAASSDT  170 (487)
T ss_dssp             EECTTCCEEECCSSCCCCEEECCCSSCEEEECCS-SCCCSG---GGBCGGGG-SSEEEEECTTSCCCEEEGGGGGGGTTT
T ss_pred             CCCCCcCEEECcCCcCCCCCccccCCCCEEECCC-CCCCCC---CchhhcCC-CCCCEEECCCCCCCCcChHHHhhhCCc
Confidence            210                 01245566666666 334220   34 56666 8888888888888866666664 7888


Q ss_pred             CceEEeccCCccCceeeecCCCCCccccEEEecCCccccceeccccccccccceeeccCCCCCCChHHHHhccccceeec
Q 036414          143 LEVLKLKQNSYFERKLACVGCSSFPQLKILHLKSMLWLEEWTMGAGAMPKLESLILNPCAYLRKLPEELWRIKSLCKLEL  222 (252)
Q Consensus       143 L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~l  222 (252)
                      |+.|++++|.+...  . . ...+++|+.|++++|. ++.++..++.+++|+.|++++|... .+|..+..+++|+.|++
T Consensus       171 L~~L~Ls~N~l~~~--~-~-~~~l~~L~~L~Ls~N~-l~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~l~~l~~L~~L~l  244 (487)
T 3oja_A          171 LEHLNLQYNFIYDV--K-G-QVVFAKLKTLDLSSNK-LAFMGPEFQSAAGVTWISLRNNKLV-LIEKALRFSQNLEHFDL  244 (487)
T ss_dssp             CCEEECTTSCCCEE--E-C-CCCCTTCCEEECCSSC-CCEECGGGGGGTTCSEEECTTSCCC-EECTTCCCCTTCCEEEC
T ss_pred             ccEEecCCCccccc--c-c-cccCCCCCEEECCCCC-CCCCCHhHcCCCCccEEEecCCcCc-ccchhhccCCCCCEEEc
Confidence            99999988887653  2 2 4468899999999998 8888777888999999999998865 57877788899999999


Q ss_pred             ccCC
Q 036414          223 HWPQ  226 (252)
Q Consensus       223 ~~~~  226 (252)
                      ++++
T Consensus       245 ~~N~  248 (487)
T 3oja_A          245 RGNG  248 (487)
T ss_dssp             TTCC
T ss_pred             CCCC
Confidence            9876

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=99.80  E-value=6.7e-20  Score=150.49  Aligned_cols=207  Identities=16%  Similarity=0.102  Sum_probs=145.3

Q ss_pred             CccccchH-HHhhccccEEEecCCCCCCCCCcccCCCCCCcEecccCCCCC-chhhcCCCCCccEEEeeccCCccccchh
Q 036414            5 YIDHSSED-IWMMQKLMHLNFGSITLPAPPKNYSSSLKNLIFISALHPSSC-TPDILSRLPTVQTLRISGDLSHYHSGVS   82 (252)
Q Consensus         5 ~l~~lp~~-i~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~~l~~~~~-~~~~l~~l~~L~~L~l~~~~~~~~~~~~   82 (252)
                      .+.+.+.. +..+++|++|++++|.+....|..+..+++|++|+ ++.+.. ....++.+++|++|++++|.   ...++
T Consensus        21 ~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~-Ls~n~l~~~~~~~~l~~L~~L~Ls~n~---l~~l~   96 (317)
T 3o53_A           21 SLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLN-LSSNVLYETLDLESLSTLRTLDLNNNY---VQELL   96 (317)
T ss_dssp             THHHHHHHHHTTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEE-CTTSCCEEEEEETTCTTCCEEECCSSE---EEEEE
T ss_pred             chhhhHHHHhccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEE-CCCCcCCcchhhhhcCCCCEEECcCCc---ccccc
Confidence            33333333 34556788888887776666666778888888888 777776 22237777888888887774   22221


Q ss_pred             Hh-----------------hhccCCCCeEEeeeccchhHHHHhhc-cccCCCCCCceEEeeecccCCCCchhh-hcCCCC
Q 036414           83 KS-----------------LCELHKLECLKLANQGKMWQITRMIL-SEYKFPPSLTQLSLSNTELIEDPMPTL-EKLPHL  143 (252)
Q Consensus        83 ~~-----------------l~~l~~L~~L~l~~~~~~~~~~~l~~-~~~~~~~~L~~l~l~~~~~~~~~~~~l-~~~~~L  143 (252)
                      ..                 ...+++|++|++++ +.+..+   .+ .+..+ ++|++|++++|.+....+..+ ..+++|
T Consensus        97 ~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~-N~l~~~---~~~~~~~l-~~L~~L~Ls~N~l~~~~~~~~~~~l~~L  171 (317)
T 3o53_A           97 VGPSIETLHAANNNISRVSCSRGQGKKNIYLAN-NKITML---RDLDEGCR-SRVQYLDLKLNEIDTVNFAELAASSDTL  171 (317)
T ss_dssp             ECTTCCEEECCSSCCSEEEECCCSSCEEEECCS-SCCCSG---GGBCTGGG-SSEEEEECTTSCCCEEEGGGGGGGTTTC
T ss_pred             CCCCcCEEECCCCccCCcCccccCCCCEEECCC-CCCCCc---cchhhhcc-CCCCEEECCCCCCCcccHHHHhhccCcC
Confidence            00                 11244566666665 444330   23 55666 888888888888876556555 468889


Q ss_pred             ceEEeccCCccCceeeecCCCCCccccEEEecCCccccceeccccccccccceeeccCCCCCCChHHHHhccccceeecc
Q 036414          144 EVLKLKQNSYFERKLACVGCSSFPQLKILHLKSMLWLEEWTMGAGAMPKLESLILNPCAYLRKLPEELWRIKSLCKLELH  223 (252)
Q Consensus       144 ~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~l~  223 (252)
                      ++|++++|.+...  . . ...+++|++|++++|. ++.++..+..+++|+.|++++|... .+|..+..+++|+.|+++
T Consensus       172 ~~L~L~~N~l~~~--~-~-~~~l~~L~~L~Ls~N~-l~~l~~~~~~l~~L~~L~L~~N~l~-~l~~~~~~l~~L~~L~l~  245 (317)
T 3o53_A          172 EHLNLQYNFIYDV--K-G-QVVFAKLKTLDLSSNK-LAFMGPEFQSAAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLR  245 (317)
T ss_dssp             CEEECTTSCCCEE--E-C-CCCCTTCCEEECCSSC-CCEECGGGGGGTTCSEEECTTSCCC-EECTTCCCCTTCCEEECT
T ss_pred             CEEECCCCcCccc--c-c-ccccccCCEEECCCCc-CCcchhhhcccCcccEEECcCCccc-chhhHhhcCCCCCEEEcc
Confidence            9999988887653  2 2 4458899999999998 8888777888999999999998765 677777888999999999


Q ss_pred             cCC
Q 036414          224 WPQ  226 (252)
Q Consensus       224 ~~~  226 (252)
                      +++
T Consensus       246 ~N~  248 (317)
T 3o53_A          246 GNG  248 (317)
T ss_dssp             TCC
T ss_pred             CCC
Confidence            876

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=99.80  E-value=5.3e-19  Score=143.36  Aligned_cols=189  Identities=19%  Similarity=0.134  Sum_probs=158.7

Q ss_pred             CCCCccccchHHHhhccccEEEecCCCCCCCCCcccCCCCCCcEecccCCCCC-chhhcCCCCCccEEEeeccCCccccc
Q 036414            2 PSSYIDHSSEDIWMMQKLMHLNFGSITLPAPPKNYSSSLKNLIFISALHPSSC-TPDILSRLPTVQTLRISGDLSHYHSG   80 (252)
Q Consensus         2 ~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~~l~~~~~-~~~~l~~l~~L~~L~l~~~~~~~~~~   80 (252)
                      .++.++++|..+.  +++++|++++|.+....+..+..+++|++|+ ++.+.+ .....+.+++|++|++++|.   ...
T Consensus        18 ~~~~l~~ip~~~~--~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~-L~~n~l~~~~~~~~l~~L~~L~Ls~N~---l~~   91 (290)
T 1p9a_G           18 DKRNLTALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLN-LDRAELTKLQVDGTLPVLGTLDLSHNQ---LQS   91 (290)
T ss_dssp             TTSCCSSCCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEE-CTTSCCCEEECCSCCTTCCEEECCSSC---CSS
T ss_pred             CCCCCCcCCCCCC--CCCCEEEcCCCcCCccCHHHhhcCCCCCEEE-CCCCccCcccCCCCCCcCCEEECCCCc---CCc
Confidence            3577888988765  6899999998888777778899999999999 998887 23334789999999999994   557


Q ss_pred             hhHhhhccCCCCeEEeeeccchhHHHHhhc--cccCCCCCCceEEeeecccCCCCchhhhcCCCCceEEeccCCccCcee
Q 036414           81 VSKSLCELHKLECLKLANQGKMWQITRMIL--SEYKFPPSLTQLSLSNTELIEDPMPTLEKLPHLEVLKLKQNSYFERKL  158 (252)
Q Consensus        81 ~~~~l~~l~~L~~L~l~~~~~~~~~~~l~~--~~~~~~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~  158 (252)
                      +|..+..+++|++|++++ +.+..    ++  .+..+ ++|++|++++|++....+..+..+++|+.|++++|.+.....
T Consensus        92 l~~~~~~l~~L~~L~l~~-N~l~~----l~~~~~~~l-~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~  165 (290)
T 1p9a_G           92 LPLLGQTLPALTVLDVSF-NRLTS----LPLGALRGL-GELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPA  165 (290)
T ss_dssp             CCCCTTTCTTCCEEECCS-SCCCC----CCSSTTTTC-TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSCCCT
T ss_pred             CchhhccCCCCCEEECCC-CcCcc----cCHHHHcCC-CCCCEEECCCCCCCccChhhcccccCCCEEECCCCcCCccCH
Confidence            788888999999999999 66655    55  57788 999999999999997777788899999999999998875322


Q ss_pred             eecCCCCCccccEEEecCCccccceeccccccccccceeeccCCCCC
Q 036414          159 ACVGCSSFPQLKILHLKSMLWLEEWTMGAGAMPKLESLILNPCAYLR  205 (252)
Q Consensus       159 ~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~~~~~~  205 (252)
                       .. +..+++|+.|++++|+ ++.++.....+++|+.+++++|+...
T Consensus       166 -~~-~~~l~~L~~L~L~~N~-l~~ip~~~~~~~~L~~l~L~~Np~~C  209 (290)
T 1p9a_G          166 -GL-LNGLENLDTLLLQENS-LYTIPKGFFGSHLLPFAFLHGNPWLC  209 (290)
T ss_dssp             -TT-TTTCTTCCEEECCSSC-CCCCCTTTTTTCCCSEEECCSCCBCC
T ss_pred             -HH-hcCcCCCCEEECCCCc-CCccChhhcccccCCeEEeCCCCccC
Confidence             22 5679999999999999 99998888888999999999988543

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=99.80  E-value=1.6e-19  Score=159.16  Aligned_cols=210  Identities=20%  Similarity=0.183  Sum_probs=149.0

Q ss_pred             CCccccchHHHhhccccEEEecCCCCCCCCCcc--------------------cCCCCCCcEecccCCCCC--c---hhh
Q 036414            4 SYIDHSSEDIWMMQKLMHLNFGSITLPAPPKNY--------------------SSSLKNLIFISALHPSSC--T---PDI   58 (252)
Q Consensus         4 ~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~~~~--------------------l~~l~~L~~L~~l~~~~~--~---~~~   58 (252)
                      +.++.+|..+..+ +|++|++++|.+. .+|..                    ...+++|++|+ ++.+..  .   +..
T Consensus       292 ~~l~~l~~~~~~~-~L~~L~l~~n~~~-~l~~~~l~~L~~L~l~~n~~~~~~~~~~~~~L~~L~-l~~n~l~~~~~~~~~  368 (570)
T 2z63_A          292 VTIERVKDFSYNF-GWQHLELVNCKFG-QFPTLKLKSLKRLTFTSNKGGNAFSEVDLPSLEFLD-LSRNGLSFKGCCSQS  368 (570)
T ss_dssp             CEECSCCBCCSCC-CCSEEEEESCBCS-SCCBCBCSSCCEEEEESCBSCCBCCCCBCTTCCEEE-CCSSCCBEEEEEEHH
T ss_pred             ccchhhhhhhccC-CccEEeeccCccc-ccCcccccccCEEeCcCCccccccccccCCCCCEEe-CcCCccCcccccccc
Confidence            4455566555555 6666666644443 23321                    14566667776 666654  1   455


Q ss_pred             cCCCCCccEEEeeccCCccccchhHhhhccCCCCeEEeeeccchhHHHHhhc--cccCCCCCCceEEeeecccCCCCchh
Q 036414           59 LSRLPTVQTLRISGDLSHYHSGVSKSLCELHKLECLKLANQGKMWQITRMIL--SEYKFPPSLTQLSLSNTELIEDPMPT  136 (252)
Q Consensus        59 l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~l~~--~~~~~~~~L~~l~l~~~~~~~~~~~~  136 (252)
                      +..+++|++|++++|.   ...++..+..+++|+.|++.+ +.+...   .+  .+..+ ++|++|++++|.+....+..
T Consensus       369 ~~~~~~L~~L~l~~n~---l~~~~~~~~~l~~L~~L~l~~-n~l~~~---~~~~~~~~l-~~L~~L~l~~n~l~~~~~~~  440 (570)
T 2z63_A          369 DFGTTSLKYLDLSFNG---VITMSSNFLGLEQLEHLDFQH-SNLKQM---SEFSVFLSL-RNLIYLDISHTHTRVAFNGI  440 (570)
T ss_dssp             HHTCSCCCEEECCSCS---EEEEEEEEETCTTCCEEECTT-SEEESC---TTSCTTTTC-TTCCEEECTTSCCEECCTTT
T ss_pred             ccccCccCEEECCCCc---cccccccccccCCCCEEEccC-Cccccc---cchhhhhcC-CCCCEEeCcCCcccccchhh
Confidence            6667777777777773   333444466777788887777 433220   22  45666 89999999999888778888


Q ss_pred             hhcCCCCceEEeccCCccCceeeecCCCCCccccEEEecCCccccce-eccccccccccceeeccCCCCCCChHHHHhcc
Q 036414          137 LEKLPHLEVLKLKQNSYFERKLACVGCSSFPQLKILHLKSMLWLEEW-TMGAGAMPKLESLILNPCAYLRKLPEELWRIK  215 (252)
Q Consensus       137 l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~-~~~~~~l~~L~~L~l~~~~~~~~~p~~l~~l~  215 (252)
                      ++.+++|++|++++|.+.+...+.. +..+++|++|++++|+ ++++ +..++.+++|+.|++++|...+..+..+..++
T Consensus       441 ~~~l~~L~~L~l~~n~l~~~~~p~~-~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~  518 (570)
T 2z63_A          441 FNGLSSLEVLKMAGNSFQENFLPDI-FTELRNLTFLDLSQCQ-LEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLT  518 (570)
T ss_dssp             TTTCTTCCEEECTTCEEGGGEECSC-CTTCTTCCEEECTTSC-CCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCT
T ss_pred             hhcCCcCcEEECcCCcCccccchhh-hhcccCCCEEECCCCc-cccCChhhhhcccCCCEEeCCCCcCCCCCHHHhhccc
Confidence            8899999999999888764444445 7889999999999999 7776 66778999999999999987655556678899


Q ss_pred             ccceeecccCC
Q 036414          216 SLCKLELHWPQ  226 (252)
Q Consensus       216 ~L~~L~l~~~~  226 (252)
                      +|++|++++++
T Consensus       519 ~L~~L~l~~N~  529 (570)
T 2z63_A          519 SLQKIWLHTNP  529 (570)
T ss_dssp             TCCEEECCSSC
T ss_pred             CCcEEEecCCc
Confidence            99999999754

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=99.80  E-value=1.5e-19  Score=148.47  Aligned_cols=197  Identities=16%  Similarity=0.108  Sum_probs=142.9

Q ss_pred             ccEEEecCCCCCCCCCcccCCCCCCcEecccCCCCC---chhhcCCCCCccEEEeeccCCccccchhHhhhccCCCCeEE
Q 036414           19 LMHLNFGSITLPAPPKNYSSSLKNLIFISALHPSSC---TPDILSRLPTVQTLRISGDLSHYHSGVSKSLCELHKLECLK   95 (252)
Q Consensus        19 L~~L~l~~~~~~~~~~~~l~~l~~L~~L~~l~~~~~---~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~   95 (252)
                      ++..+++.+.+.......+..+++|++|+ ++.+..   .+..++.+++|++|++++|.  ... .+. +..+++|++|+
T Consensus        12 l~i~~ls~~~l~~~~~~~~~~~~~L~~L~-L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~--l~~-~~~-~~~l~~L~~L~   86 (317)
T 3o53_A           12 YKIEKVTDSSLKQALASLRQSAWNVKELD-LSGNPLSQISAADLAPFTKLELLNLSSNV--LYE-TLD-LESLSTLRTLD   86 (317)
T ss_dssp             EEEESCCTTTHHHHHHHHHTTGGGCSEEE-CTTSCCCCCCHHHHTTCTTCCEEECTTSC--CEE-EEE-ETTCTTCCEEE
T ss_pred             eeEeeccccchhhhHHHHhccCCCCCEEE-CcCCccCcCCHHHhhCCCcCCEEECCCCc--CCc-chh-hhhcCCCCEEE
Confidence            44455554443323333456677999999 988877   45679999999999999996  333 332 78899999999


Q ss_pred             eeeccchhHH---HHh---------hc--cccCCCCCCceEEeeecccCCCCchhhhcCCCCceEEeccCCccCceeeec
Q 036414           96 LANQGKMWQI---TRM---------IL--SEYKFPPSLTQLSLSNTELIEDPMPTLEKLPHLEVLKLKQNSYFERKLACV  161 (252)
Q Consensus        96 l~~~~~~~~~---~~l---------~~--~~~~~~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~  161 (252)
                      +++ +.+..+   .++         +.  ....+ ++|++|++++|.++...+..++.+++|++|++++|.+........
T Consensus        87 Ls~-n~l~~l~~~~~L~~L~l~~n~l~~~~~~~~-~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~  164 (317)
T 3o53_A           87 LNN-NYVQELLVGPSIETLHAANNNISRVSCSRG-QGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAEL  164 (317)
T ss_dssp             CCS-SEEEEEEECTTCCEEECCSSCCSEEEECCC-SSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEGGGG
T ss_pred             CcC-CccccccCCCCcCEEECCCCccCCcCcccc-CCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcccHHHH
Confidence            988 433220   000         00  11234 778888888888886667778889999999999888876443322


Q ss_pred             CCCCCccccEEEecCCccccceeccccccccccceeeccCCCCCCChHHHHhccccceeecccCC
Q 036414          162 GCSSFPQLKILHLKSMLWLEEWTMGAGAMPKLESLILNPCAYLRKLPEELWRIKSLCKLELHWPQ  226 (252)
Q Consensus       162 ~~~~~~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~l~~~~  226 (252)
                       ...+++|++|++++|. +++++. ...+++|+.|++++|... .+|..+..+++|++|+++++.
T Consensus       165 -~~~l~~L~~L~L~~N~-l~~~~~-~~~l~~L~~L~Ls~N~l~-~l~~~~~~l~~L~~L~L~~N~  225 (317)
T 3o53_A          165 -AASSDTLEHLNLQYNF-IYDVKG-QVVFAKLKTLDLSSNKLA-FMGPEFQSAAGVTWISLRNNK  225 (317)
T ss_dssp             -GGGTTTCCEEECTTSC-CCEEEC-CCCCTTCCEEECCSSCCC-EECGGGGGGTTCSEEECTTSC
T ss_pred             -hhccCcCCEEECCCCc-Cccccc-ccccccCCEEECCCCcCC-cchhhhcccCcccEEECcCCc
Confidence             3468899999999999 888755 335899999999999865 566668889999999999874

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=99.80  E-value=9.2e-19  Score=152.85  Aligned_cols=91  Identities=16%  Similarity=0.184  Sum_probs=65.0

Q ss_pred             CCCccccc-hHHHhhccccEEEecCCCCCCCCCcccCCCCCCcEecccCCCCC--chhhcCCCCCccEEEeeccCCcccc
Q 036414            3 SSYIDHSS-EDIWMMQKLMHLNFGSITLPAPPKNYSSSLKNLIFISALHPSSC--TPDILSRLPTVQTLRISGDLSHYHS   79 (252)
Q Consensus         3 ~~~l~~lp-~~i~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~~l~~~~~--~~~~l~~l~~L~~L~l~~~~~~~~~   79 (252)
                      ++.++.++ .++..+++|++|++++|.+....|..+.++++|++|+ ++.+..  +|..  .+++|++|++++|.  ...
T Consensus        30 ~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~-Ls~N~l~~lp~~--~l~~L~~L~L~~N~--l~~  104 (520)
T 2z7x_B           30 QNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLD-LSHNKLVKISCH--PTVNLKHLDLSFNA--FDA  104 (520)
T ss_dssp             SSCCCCCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEE-CCSSCCCEEECC--CCCCCSEEECCSSC--CSS
T ss_pred             CCcccccChhhccccccccEEecCCCccCCcChHHhhcccCCCEEe-cCCCceeecCcc--ccCCccEEeccCCc--ccc
Confidence            46666665 4677888888888887776665677778888888888 777766  4433  67788888887774  333


Q ss_pred             -chhHhhhccCCCCeEEeee
Q 036414           80 -GVSKSLCELHKLECLKLAN   98 (252)
Q Consensus        80 -~~~~~l~~l~~L~~L~l~~   98 (252)
                       .+|..+..+++|++|++++
T Consensus       105 ~~~p~~~~~l~~L~~L~L~~  124 (520)
T 2z7x_B          105 LPICKEFGNMSQLKFLGLST  124 (520)
T ss_dssp             CCCCGGGGGCTTCCEEEEEE
T ss_pred             ccchhhhccCCcceEEEecC
Confidence             3566777778888887777

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=99.80  E-value=1.8e-18  Score=138.81  Aligned_cols=192  Identities=19%  Similarity=0.209  Sum_probs=153.6

Q ss_pred             cccEEEecCCCCCCCCCcccCCCCCCcEecccCCCCC--c-hhhcCCCCCccEEEeeccCCccccchhH-hhhccCCCCe
Q 036414           18 KLMHLNFGSITLPAPPKNYSSSLKNLIFISALHPSSC--T-PDILSRLPTVQTLRISGDLSHYHSGVSK-SLCELHKLEC   93 (252)
Q Consensus        18 ~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~~l~~~~~--~-~~~l~~l~~L~~L~l~~~~~~~~~~~~~-~l~~l~~L~~   93 (252)
                      +.++++++++.+. .+|..+.  +++++|+ ++.+..  . +..++.+++|++|++++|.   ...++. .+..+++|++
T Consensus        17 ~~~~l~~~~~~l~-~ip~~~~--~~l~~L~-l~~n~l~~~~~~~~~~l~~L~~L~l~~n~---l~~i~~~~~~~l~~L~~   89 (270)
T 2o6q_A           17 NKNSVDCSSKKLT-AIPSNIP--ADTKKLD-LQSNKLSSLPSKAFHRLTKLRLLYLNDNK---LQTLPAGIFKELKNLET   89 (270)
T ss_dssp             TTTEEECTTSCCS-SCCSCCC--TTCSEEE-CCSSCCSCCCTTSSSSCTTCCEEECCSSC---CSCCCTTTTSSCTTCCE
T ss_pred             CCCEEEccCCCCC-ccCCCCC--CCCCEEE-CcCCCCCeeCHHHhcCCCCCCEEECCCCc---cCeeChhhhcCCCCCCE
Confidence            4788999966654 5676554  6799999 888876  3 3468899999999999995   334444 4578999999


Q ss_pred             EEeeeccchhHHHHhhc--cccCCCCCCceEEeeecccCCCCchhhhcCCCCceEEeccCCccCceeeecCCCCCccccE
Q 036414           94 LKLANQGKMWQITRMIL--SEYKFPPSLTQLSLSNTELIEDPMPTLEKLPHLEVLKLKQNSYFERKLACVGCSSFPQLKI  171 (252)
Q Consensus        94 L~l~~~~~~~~~~~l~~--~~~~~~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~  171 (252)
                      |++.+ +.+..    ++  .+..+ ++|++|++++|.++...+..++.+++|++|++++|.+...... . +..+++|++
T Consensus        90 L~l~~-n~l~~----~~~~~~~~l-~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~-~-~~~l~~L~~  161 (270)
T 2o6q_A           90 LWVTD-NKLQA----LPIGVFDQL-VNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKG-V-FDKLTSLKE  161 (270)
T ss_dssp             EECCS-SCCCC----CCTTTTTTC-SSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTT-T-TTTCTTCCE
T ss_pred             EECCC-CcCCc----CCHhHcccc-cCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCccCHh-H-ccCCcccce
Confidence            99998 55655    55  55677 9999999999999988888889999999999999987653322 2 568999999


Q ss_pred             EEecCCccccceec-cccccccccceeeccCCCCCCChH-HHHhccccceeecccCC
Q 036414          172 LHLKSMLWLEEWTM-GAGAMPKLESLILNPCAYLRKLPE-ELWRIKSLCKLELHWPQ  226 (252)
Q Consensus       172 L~l~~~~~l~~~~~-~~~~l~~L~~L~l~~~~~~~~~p~-~l~~l~~L~~L~l~~~~  226 (252)
                      |++++|. ++.++. .+..+++|+.|++++|... .+|. .+..+++|+.|++.+++
T Consensus       162 L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~N~l~-~~~~~~~~~l~~L~~L~l~~N~  216 (270)
T 2o6q_A          162 LRLYNNQ-LKRVPEGAFDKLTELKTLKLDNNQLK-RVPEGAFDSLEKLKMLQLQENP  216 (270)
T ss_dssp             EECCSSC-CSCCCTTTTTTCTTCCEEECCSSCCS-CCCTTTTTTCTTCCEEECCSSC
T ss_pred             eEecCCc-CcEeChhHhccCCCcCEEECCCCcCC-cCCHHHhccccCCCEEEecCCC
Confidence            9999998 888765 3678999999999999775 4554 46789999999998765

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=99.80  E-value=1.1e-18  Score=142.57  Aligned_cols=190  Identities=16%  Similarity=0.185  Sum_probs=139.6

Q ss_pred             HHhhccccEEEecCCCCCCCCCcccCCCCCCcEecccCCCCC--chhhcCCCCCccEEEeeccCCccccchhHhhhccCC
Q 036414           13 IWMMQKLMHLNFGSITLPAPPKNYSSSLKNLIFISALHPSSC--TPDILSRLPTVQTLRISGDLSHYHSGVSKSLCELHK   90 (252)
Q Consensus        13 i~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~~l~~~~~--~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~   90 (252)
                      ...+++|++|+++++.+. .++ .+..+++|++|+ ++.+..  .+. ++.+++|++|++++|.   ...++ .+..+++
T Consensus        37 ~~~l~~L~~L~l~~~~i~-~l~-~~~~l~~L~~L~-L~~n~i~~~~~-~~~l~~L~~L~L~~n~---l~~~~-~~~~l~~  108 (308)
T 1h6u_A           37 QADLDGITTLSAFGTGVT-TIE-GVQYLNNLIGLE-LKDNQITDLAP-LKNLTKITELELSGNP---LKNVS-AIAGLQS  108 (308)
T ss_dssp             HHHHHTCCEEECTTSCCC-CCT-TGGGCTTCCEEE-CCSSCCCCCGG-GTTCCSCCEEECCSCC---CSCCG-GGTTCTT
T ss_pred             HHHcCCcCEEEeeCCCcc-Cch-hhhccCCCCEEE-ccCCcCCCChh-HccCCCCCEEEccCCc---CCCch-hhcCCCC
Confidence            456788888888866554 344 577888888888 877776  333 8888888888888885   33333 5778888


Q ss_pred             CCeEEeeeccchhHHHHhhccccCCCCCCceEEeeecccCCCCchhhhcCCCCceEEeccCCccCceeeecCCCCCcccc
Q 036414           91 LECLKLANQGKMWQITRMILSEYKFPPSLTQLSLSNTELIEDPMPTLEKLPHLEVLKLKQNSYFERKLACVGCSSFPQLK  170 (252)
Q Consensus        91 L~~L~l~~~~~~~~~~~l~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~  170 (252)
                      |++|++++ +.+..    ++.+..+ ++|++|++++|.++...+  ++.+++|+.|++++|.+.....    ...+++|+
T Consensus       109 L~~L~l~~-n~l~~----~~~l~~l-~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~~~----l~~l~~L~  176 (308)
T 1h6u_A          109 IKTLDLTS-TQITD----VTPLAGL-SNLQVLYLDLNQITNISP--LAGLTNLQYLSIGNAQVSDLTP----LANLSKLT  176 (308)
T ss_dssp             CCEEECTT-SCCCC----CGGGTTC-TTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG----GTTCTTCC
T ss_pred             CCEEECCC-CCCCC----chhhcCC-CCCCEEECCCCccCcCcc--ccCCCCccEEEccCCcCCCChh----hcCCCCCC
Confidence            88888888 55555    5566777 888888888888874433  7788888888888887765221    45788888


Q ss_pred             EEEecCCccccceeccccccccccceeeccCCCCCCChHHHHhccccceeecccCC
Q 036414          171 ILHLKSMLWLEEWTMGAGAMPKLESLILNPCAYLRKLPEELWRIKSLCKLELHWPQ  226 (252)
Q Consensus       171 ~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~l~~~~  226 (252)
                      .|++++|. +++++. ...+++|+.|++++|... .++ .+..+++|++|++++++
T Consensus       177 ~L~l~~n~-l~~~~~-l~~l~~L~~L~L~~N~l~-~~~-~l~~l~~L~~L~l~~N~  228 (308)
T 1h6u_A          177 TLKADDNK-ISDISP-LASLPNLIEVHLKNNQIS-DVS-PLANTSNLFIVTLTNQT  228 (308)
T ss_dssp             EEECCSSC-CCCCGG-GGGCTTCCEEECTTSCCC-BCG-GGTTCTTCCEEEEEEEE
T ss_pred             EEECCCCc-cCcChh-hcCCCCCCEEEccCCccC-ccc-cccCCCCCCEEEccCCe
Confidence            88888888 777765 677888888888888764 444 36778888888887664

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=99.79  E-value=1.1e-18  Score=142.70  Aligned_cols=181  Identities=18%  Similarity=0.213  Sum_probs=150.2

Q ss_pred             CCCCccccchHHHhhccccEEEecCCCCCCCCCcccCCCCCCcEecccCCCCC-chhhcCCCCCccEEEeeccCCccccc
Q 036414            2 PSSYIDHSSEDIWMMQKLMHLNFGSITLPAPPKNYSSSLKNLIFISALHPSSC-TPDILSRLPTVQTLRISGDLSHYHSG   80 (252)
Q Consensus         2 ~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~~l~~~~~-~~~~l~~l~~L~~L~l~~~~~~~~~~   80 (252)
                      .++.++.+| ++..+++|++|++++|.+.. ++. +..+++|++|+ ++.+.. .++.++.+++|++|++++|.   ...
T Consensus        49 ~~~~i~~l~-~~~~l~~L~~L~L~~n~i~~-~~~-~~~l~~L~~L~-L~~n~l~~~~~~~~l~~L~~L~l~~n~---l~~  121 (308)
T 1h6u_A           49 FGTGVTTIE-GVQYLNNLIGLELKDNQITD-LAP-LKNLTKITELE-LSGNPLKNVSAIAGLQSIKTLDLTSTQ---ITD  121 (308)
T ss_dssp             TTSCCCCCT-TGGGCTTCCEEECCSSCCCC-CGG-GTTCCSCCEEE-CCSCCCSCCGGGTTCTTCCEEECTTSC---CCC
T ss_pred             eCCCccCch-hhhccCCCCEEEccCCcCCC-Chh-HccCCCCCEEE-ccCCcCCCchhhcCCCCCCEEECCCCC---CCC
Confidence            457788888 68999999999999776654 444 89999999999 998887 45578999999999999995   334


Q ss_pred             hhHhhhccCCCCeEEeeeccchhHHHHhhccccCCCCCCceEEeeecccCCCCchhhhcCCCCceEEeccCCccCceeee
Q 036414           81 VSKSLCELHKLECLKLANQGKMWQITRMILSEYKFPPSLTQLSLSNTELIEDPMPTLEKLPHLEVLKLKQNSYFERKLAC  160 (252)
Q Consensus        81 ~~~~l~~l~~L~~L~l~~~~~~~~~~~l~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~  160 (252)
                      ++. +..+++|++|++++ +.+..    ++.+..+ ++|++|++++|.++...+  +..+++|+.|++++|.+.+...  
T Consensus       122 ~~~-l~~l~~L~~L~l~~-n~l~~----~~~l~~l-~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~~~--  190 (308)
T 1h6u_A          122 VTP-LAGLSNLQVLYLDL-NQITN----ISPLAGL-TNLQYLSIGNAQVSDLTP--LANLSKLTTLKADDNKISDISP--  190 (308)
T ss_dssp             CGG-GTTCTTCCEEECCS-SCCCC----CGGGGGC-TTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCCGG--
T ss_pred             chh-hcCCCCCCEEECCC-CccCc----CccccCC-CCccEEEccCCcCCCChh--hcCCCCCCEEECCCCccCcChh--
Confidence            443 88999999999999 56655    5567788 999999999999985433  8899999999999998865332  


Q ss_pred             cCCCCCccccEEEecCCccccceeccccccccccceeeccCCCC
Q 036414          161 VGCSSFPQLKILHLKSMLWLEEWTMGAGAMPKLESLILNPCAYL  204 (252)
Q Consensus       161 ~~~~~~~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~~~~~  204 (252)
                        ...+++|++|++++|+ +++++. +..+++|+.|++++|...
T Consensus       191 --l~~l~~L~~L~L~~N~-l~~~~~-l~~l~~L~~L~l~~N~i~  230 (308)
T 1h6u_A          191 --LASLPNLIEVHLKNNQ-ISDVSP-LANTSNLFIVTLTNQTIT  230 (308)
T ss_dssp             --GGGCTTCCEEECTTSC-CCBCGG-GTTCTTCCEEEEEEEEEE
T ss_pred             --hcCCCCCCEEEccCCc-cCcccc-ccCCCCCCEEEccCCeee
Confidence              4578999999999999 888775 788999999999999864

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=99.79  E-value=2.1e-18  Score=148.78  Aligned_cols=193  Identities=20%  Similarity=0.199  Sum_probs=98.0

Q ss_pred             HHhhccccEEEecCCCCCCCCCcccCCCCCCcEecccCCCCC-chhhcCCCCCccEEEeeccCCc---------------
Q 036414           13 IWMMQKLMHLNFGSITLPAPPKNYSSSLKNLIFISALHPSSC-TPDILSRLPTVQTLRISGDLSH---------------   76 (252)
Q Consensus        13 i~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~~l~~~~~-~~~~l~~l~~L~~L~l~~~~~~---------------   76 (252)
                      +.++++|++|++++|.+.. + ..+..+++|++|+ ++.+.. ....++.+++|++|++++|.-.               
T Consensus       173 ~~~l~~L~~L~l~~n~l~~-~-~~l~~l~~L~~L~-l~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~  249 (466)
T 1o6v_A          173 LANLTTLERLDISSNKVSD-I-SVLAKLTNLESLI-ATNNQISDITPLGILTNLDELSLNGNQLKDIGTLASLTNLTDLD  249 (466)
T ss_dssp             GTTCTTCCEEECCSSCCCC-C-GGGGGCTTCSEEE-CCSSCCCCCGGGGGCTTCCEEECCSSCCCCCGGGGGCTTCSEEE
T ss_pred             hccCCCCCEEECcCCcCCC-C-hhhccCCCCCEEE-ecCCcccccccccccCCCCEEECCCCCcccchhhhcCCCCCEEE
Confidence            5555566666665444322 2 2245555555555 544443 1112444455555555544300               


Q ss_pred             ----cccchhHhhhccCCCCeEEeeeccchhHHHHhhccccCCCCCCceEEeeecccCCCCchhhhcCCCCceEEeccCC
Q 036414           77 ----YHSGVSKSLCELHKLECLKLANQGKMWQITRMILSEYKFPPSLTQLSLSNTELIEDPMPTLEKLPHLEVLKLKQNS  152 (252)
Q Consensus        77 ----~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~l~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~  152 (252)
                          .....+. +..+++|++|++.+ +.+..    ++.+..+ ++|++|++++|.+.+..+  ++.+++|+.|++++|.
T Consensus       250 l~~n~l~~~~~-~~~l~~L~~L~l~~-n~l~~----~~~~~~l-~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~L~~n~  320 (466)
T 1o6v_A          250 LANNQISNLAP-LSGLTKLTELKLGA-NQISN----ISPLAGL-TALTNLELNENQLEDISP--ISNLKNLTYLTLYFNN  320 (466)
T ss_dssp             CCSSCCCCCGG-GTTCTTCSEEECCS-SCCCC----CGGGTTC-TTCSEEECCSSCCSCCGG--GGGCTTCSEEECCSSC
T ss_pred             CCCCccccchh-hhcCCCCCEEECCC-CccCc----cccccCC-CccCeEEcCCCcccCchh--hcCCCCCCEEECcCCc
Confidence                1111111 34444555555544 23322    2334444 566666666665553222  4556666666666665


Q ss_pred             ccCceeeecCCCCCccccEEEecCCccccceeccccccccccceeeccCCCCCCChHHHHhccccceeecccC
Q 036414          153 YFERKLACVGCSSFPQLKILHLKSMLWLEEWTMGAGAMPKLESLILNPCAYLRKLPEELWRIKSLCKLELHWP  225 (252)
Q Consensus       153 ~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~l~~~  225 (252)
                      +.+...    ...+++|+.|++++|+ +++++ ..+.+++|+.|++++|...+..|  +..+++|++|++.++
T Consensus       321 l~~~~~----~~~l~~L~~L~l~~n~-l~~~~-~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n  385 (466)
T 1o6v_A          321 ISDISP----VSSLTKLQRLFFYNNK-VSDVS-SLANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQ  385 (466)
T ss_dssp             CSCCGG----GGGCTTCCEEECCSSC-CCCCG-GGTTCTTCCEEECCSSCCCBCGG--GTTCTTCCEEECCCE
T ss_pred             CCCchh----hccCccCCEeECCCCc-cCCch-hhccCCCCCEEeCCCCccCccch--hhcCCCCCEEeccCC
Confidence            544221    2356666666666665 55553 35566677777777766544333  566777777777665

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=99.79  E-value=3.8e-19  Score=142.86  Aligned_cols=182  Identities=20%  Similarity=0.199  Sum_probs=140.3

Q ss_pred             HHhhccccEEEecCCCCCCCCCcccCCCCCCcEecccCCCCC-chhhcCCCCCccEEEeeccCCccccchhHhhhccCCC
Q 036414           13 IWMMQKLMHLNFGSITLPAPPKNYSSSLKNLIFISALHPSSC-TPDILSRLPTVQTLRISGDLSHYHSGVSKSLCELHKL   91 (252)
Q Consensus        13 i~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~~l~~~~~-~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L   91 (252)
                      ...+++|+.|+++++... .+ ..+..+++|++|+ ++.+.. .++.++.+++|++|++++|.  .....+..+..+++|
T Consensus        37 ~~~l~~L~~L~l~~~~i~-~~-~~l~~l~~L~~L~-l~~n~l~~~~~l~~l~~L~~L~L~~n~--l~~~~~~~~~~l~~L  111 (272)
T 3rfs_A           37 QNELNSIDQIIANNSDIK-SV-QGIQYLPNVRYLA-LGGNKLHDISALKELTNLTYLILTGNQ--LQSLPNGVFDKLTNL  111 (272)
T ss_dssp             HHHHTTCCEEECTTSCCC-CC-TTGGGCTTCCEEE-CTTSCCCCCGGGTTCTTCCEEECTTSC--CCCCCTTTTTTCTTC
T ss_pred             cccccceeeeeeCCCCcc-cc-cccccCCCCcEEE-CCCCCCCCchhhcCCCCCCEEECCCCc--cCccChhHhcCCcCC
Confidence            567889999999966543 33 3478899999999 888877 45578889999999999985  444444556888999


Q ss_pred             CeEEeeeccchhHHHHhhc--cccCCCCCCceEEeeecccCCCCchhhhcCCCCceEEeccCCccCceeeecCCCCCccc
Q 036414           92 ECLKLANQGKMWQITRMIL--SEYKFPPSLTQLSLSNTELIEDPMPTLEKLPHLEVLKLKQNSYFERKLACVGCSSFPQL  169 (252)
Q Consensus        92 ~~L~l~~~~~~~~~~~l~~--~~~~~~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L  169 (252)
                      ++|++.+ +.+..    ++  .+..+ ++|++|++++|.++...+..++.+++|+.|++++|.+...... . ++.+++|
T Consensus       112 ~~L~L~~-n~l~~----~~~~~~~~l-~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~-~-~~~l~~L  183 (272)
T 3rfs_A          112 KELVLVE-NQLQS----LPDGVFDKL-TNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEG-V-FDKLTQL  183 (272)
T ss_dssp             CEEECTT-SCCCC----CCTTTTTTC-TTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTT-T-TTTCTTC
T ss_pred             CEEECCC-CcCCc----cCHHHhccC-CCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCccCHH-H-hcCCccC
Confidence            9999988 55544    44  46777 8999999999998877777788899999999998887653222 2 5678999


Q ss_pred             cEEEecCCccccceecc-ccccccccceeeccCCCCCCCh
Q 036414          170 KILHLKSMLWLEEWTMG-AGAMPKLESLILNPCAYLRKLP  208 (252)
Q Consensus       170 ~~L~l~~~~~l~~~~~~-~~~l~~L~~L~l~~~~~~~~~p  208 (252)
                      ++|++++|+ +++++.. ++.+++|+.|++++|+.....|
T Consensus       184 ~~L~L~~N~-l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~  222 (272)
T 3rfs_A          184 KDLRLYQNQ-LKSVPDGVFDRLTSLQYIWLHDNPWDCTCP  222 (272)
T ss_dssp             CEEECCSSC-CSCCCTTTTTTCTTCCEEECCSSCBCCCTT
T ss_pred             CEEECCCCc-CCccCHHHHhCCcCCCEEEccCCCccccCc
Confidence            999999998 7777543 5788999999999987655433

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=99.79  E-value=1e-18  Score=157.22  Aligned_cols=212  Identities=21%  Similarity=0.215  Sum_probs=132.3

Q ss_pred             Ccccc-chHHHhhccccEEEecCCCCCCCCC-cccCCCCCCcEecccCCCCC---chhhcCCCCCccEEEeeccCCcccc
Q 036414            5 YIDHS-SEDIWMMQKLMHLNFGSITLPAPPK-NYSSSLKNLIFISALHPSSC---TPDILSRLPTVQTLRISGDLSHYHS   79 (252)
Q Consensus         5 ~l~~l-p~~i~~l~~L~~L~l~~~~~~~~~~-~~l~~l~~L~~L~~l~~~~~---~~~~l~~l~~L~~L~l~~~~~~~~~   79 (252)
                      .+..+ |.++..+++|++|++++|.+...+| ..+.++++|++|+ ++.+..   .+..+..+++|++|+++++.-....
T Consensus       392 ~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~-Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~  470 (680)
T 1ziw_A          392 KISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIY-LSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVD  470 (680)
T ss_dssp             CCCEECTTTTTTCTTCCEEECCSSCCEEECCSGGGTTCTTCCEEE-CCSCSEEECCTTTTTTCTTCCEEECTTSCCBCTT
T ss_pred             CCCeEChhhhhCCCCCCEEeCCCCcCccccCcccccCcccccEEe-cCCCCcceeChhhhhcCcccccchhccccccccc
Confidence            34343 3345566666666666555543333 4456666666666 655554   3344555666666666666421224


Q ss_pred             chhHhhhccCCCCeEEeeeccchhHHHHhhc--cccCCCCCCceEEeeecccCCC--------CchhhhcCCCCceEEec
Q 036414           80 GVSKSLCELHKLECLKLANQGKMWQITRMIL--SEYKFPPSLTQLSLSNTELIED--------PMPTLEKLPHLEVLKLK  149 (252)
Q Consensus        80 ~~~~~l~~l~~L~~L~l~~~~~~~~~~~l~~--~~~~~~~~L~~l~l~~~~~~~~--------~~~~l~~~~~L~~L~l~  149 (252)
                      ..|..+..+++|+.|++++ +.+..    ++  .+..+ ++|++|++++|.++..        ....++.+++|+.|+++
T Consensus       471 ~~p~~~~~l~~L~~L~Ls~-N~l~~----i~~~~~~~l-~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~  544 (680)
T 1ziw_A          471 SSPSPFQPLRNLTILDLSN-NNIAN----INDDMLEGL-EKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLE  544 (680)
T ss_dssp             CSSCTTTTCTTCCEEECCS-SCCCC----CCTTTTTTC-TTCCEEECCSSCCGGGGSTTSTTSCCCTTTTCTTCCEEECC
T ss_pred             cCCcccccCCCCCEEECCC-CCCCc----CChhhhccc-cccCEEeCCCCCccccchhhccCCcchhhcCCCCCCEEECC
Confidence            4566667777777777777 44444    44  45666 7778888777766532        11235677778888887


Q ss_pred             cCCccCceeeecCCCCCccccEEEecCCccccceecc-ccccccccceeeccCCCCCCChHHHH-hccccceeecccCC
Q 036414          150 QNSYFERKLACVGCSSFPQLKILHLKSMLWLEEWTMG-AGAMPKLESLILNPCAYLRKLPEELW-RIKSLCKLELHWPQ  226 (252)
Q Consensus       150 ~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~-~~~l~~L~~L~l~~~~~~~~~p~~l~-~l~~L~~L~l~~~~  226 (252)
                      +|.+.... ... +.++++|+.|++++|. ++.++.. +..+++|+.|++++|....-.+..+. .+++|+.+++++++
T Consensus       545 ~N~l~~i~-~~~-~~~l~~L~~L~Ls~N~-l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~l~l~~N~  620 (680)
T 1ziw_A          545 SNGFDEIP-VEV-FKDLFELKIIDLGLNN-LNTLPASVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTELDMRFNP  620 (680)
T ss_dssp             SSCCCCCC-TTT-TTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECTTSCCCBCCHHHHHHHHTTCSEEECTTCC
T ss_pred             CCCCCCCC-HHH-cccccCcceeECCCCC-CCcCCHhHhCCCCCCCEEECCCCcCCccChhHhcccccccCEEEccCCC
Confidence            77765321 112 5677888888888887 7777554 46778888888888876544444455 67888888888765

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=99.79  E-value=3.9e-18  Score=147.11  Aligned_cols=66  Identities=17%  Similarity=0.201  Sum_probs=32.4

Q ss_pred             CCccccchHHHhhccccEEEecCCCCCCCCCcccCCCCCCcEecccCCCCC-chhhcCCCCCccEEEeecc
Q 036414            4 SYIDHSSEDIWMMQKLMHLNFGSITLPAPPKNYSSSLKNLIFISALHPSSC-TPDILSRLPTVQTLRISGD   73 (252)
Q Consensus         4 ~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~~l~~~~~-~~~~l~~l~~L~~L~l~~~   73 (252)
                      +.++.+|. +..+++|++|++++|.+.. +++ +..+++|++|+ ++.+.. ....++.+++|++|++++|
T Consensus        56 ~~i~~l~~-~~~l~~L~~L~Ls~n~l~~-~~~-~~~l~~L~~L~-l~~n~l~~~~~~~~l~~L~~L~L~~n  122 (466)
T 1o6v_A           56 LGIKSIDG-VEYLNNLTQINFSNNQLTD-ITP-LKNLTKLVDIL-MNNNQIADITPLANLTNLTGLTLFNN  122 (466)
T ss_dssp             SCCCCCTT-GGGCTTCCEEECCSSCCCC-CGG-GTTCTTCCEEE-CCSSCCCCCGGGTTCTTCCEEECCSS
T ss_pred             CCCccCcc-hhhhcCCCEEECCCCccCC-chh-hhccccCCEEE-CCCCccccChhhcCCCCCCEEECCCC
Confidence            44555553 5556666666666544332 222 55555555555 544444 1111445555555555554

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=99.79  E-value=2.1e-19  Score=148.46  Aligned_cols=206  Identities=18%  Similarity=0.164  Sum_probs=142.2

Q ss_pred             chHHHhh--ccccEEEecCCCCCCCCCcccCCCCCCcEecccCCCCC----chhhcCCCCCccEEEeeccCCccccchhH
Q 036414           10 SEDIWMM--QKLMHLNFGSITLPAPPKNYSSSLKNLIFISALHPSSC----TPDILSRLPTVQTLRISGDLSHYHSGVSK   83 (252)
Q Consensus        10 p~~i~~l--~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~~l~~~~~----~~~~l~~l~~L~~L~l~~~~~~~~~~~~~   83 (252)
                      |..+..+  ++++.|+++++.+....+. +..+++|++|+ ++.+..    .+..+..+++|++|++++|.  .....+.
T Consensus        61 ~~~~~~~~~~~l~~L~l~~n~l~~~~~~-~~~~~~L~~L~-L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~--l~~~~~~  136 (336)
T 2ast_B           61 PDVTGRLLSQGVIAFRCPRSFMDQPLAE-HFSPFRVQHMD-LSNSVIEVSTLHGILSQCSKLQNLSLEGLR--LSDPIVN  136 (336)
T ss_dssp             HHHHHHHHHTTCSEEECTTCEECSCCCS-CCCCBCCCEEE-CTTCEECHHHHHHHHTTBCCCSEEECTTCB--CCHHHHH
T ss_pred             HHHHHhhhhccceEEEcCCccccccchh-hccCCCCCEEE-ccCCCcCHHHHHHHHhhCCCCCEEeCcCcc--cCHHHHH
Confidence            4556666  7888888886666554444 56788888888 777765    34457778888888888886  5566777


Q ss_pred             hhhccCCCCeEEeeeccchh--HHHHhhc-cccCCCCCCceEEeeec-ccCCC-CchhhhcCC-CCceEEeccCC--ccC
Q 036414           84 SLCELHKLECLKLANQGKMW--QITRMIL-SEYKFPPSLTQLSLSNT-ELIED-PMPTLEKLP-HLEVLKLKQNS--YFE  155 (252)
Q Consensus        84 ~l~~l~~L~~L~l~~~~~~~--~~~~l~~-~~~~~~~~L~~l~l~~~-~~~~~-~~~~l~~~~-~L~~L~l~~~~--~~~  155 (252)
                      .+..+++|++|++.+|..+.  .    ++ .+..+ ++|++|++++| .+++. .+..++.++ +|++|++++|.  +.+
T Consensus       137 ~l~~~~~L~~L~L~~~~~l~~~~----l~~~~~~~-~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~  211 (336)
T 2ast_B          137 TLAKNSNLVRLNLSGCSGFSEFA----LQTLLSSC-SRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQK  211 (336)
T ss_dssp             HHTTCTTCSEEECTTCBSCCHHH----HHHHHHHC-TTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCH
T ss_pred             HHhcCCCCCEEECCCCCCCCHHH----HHHHHhcC-CCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCCCcccCCH
Confidence            78888888888888853442  3    44 45666 88888888888 77643 355667788 88888888773  332


Q ss_pred             ceeeecCCCCCccccEEEecCCcccc-ceeccccccccccceeeccCCCCC-CChHHHHhccccceeecccC
Q 036414          156 RKLACVGCSSFPQLKILHLKSMLWLE-EWTMGAGAMPKLESLILNPCAYLR-KLPEELWRIKSLCKLELHWP  225 (252)
Q Consensus       156 ~~~~~~~~~~~~~L~~L~l~~~~~l~-~~~~~~~~l~~L~~L~l~~~~~~~-~~p~~l~~l~~L~~L~l~~~  225 (252)
                      ..+... ...+++|++|++++|..++ ..+..++.+++|+.|++++|.... .....+..+++|++|++++|
T Consensus       212 ~~l~~~-~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~  282 (336)
T 2ast_B          212 SDLSTL-VRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI  282 (336)
T ss_dssp             HHHHHH-HHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS
T ss_pred             HHHHHH-HhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCCCCCHHHHHHHhcCCCCCEEeccCc
Confidence            223323 4567888888888887444 344456777888888888885221 11124667888888888877

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=99.78  E-value=6.9e-19  Score=141.54  Aligned_cols=193  Identities=17%  Similarity=0.130  Sum_probs=153.6

Q ss_pred             CCCCccccch-HHHhhccccEEEecCCCCCCCCCcccCCCCCCcEecccCCCCC---chhhcCCCCCccEEEeeccCCcc
Q 036414            2 PSSYIDHSSE-DIWMMQKLMHLNFGSITLPAPPKNYSSSLKNLIFISALHPSSC---TPDILSRLPTVQTLRISGDLSHY   77 (252)
Q Consensus         2 ~~~~l~~lp~-~i~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~~l~~~~~---~~~~l~~l~~L~~L~l~~~~~~~   77 (252)
                      -++.++.++. .+..+++|++|++++|.+....+..+..+++|++|+ ++.+..   .+..+..+++|++|++++|.  .
T Consensus        36 s~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~-L~~n~l~~~~~~~~~~l~~L~~L~l~~n~--l  112 (276)
T 2z62_A           36 SFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLI-LTGNPIQSLALGAFSGLSSLQKLVAVETN--L  112 (276)
T ss_dssp             TTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEE-CTTCCCCEECTTTTTTCTTCCEEECTTSC--C
T ss_pred             CCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEE-CCCCccCccChhhhcCCccccEEECCCCC--c
Confidence            3577888876 689999999999998877666666789999999999 998877   44568899999999999996  3


Q ss_pred             ccchhHhhhccCCCCeEEeeeccchh--HHHHhhc-cccCCCCCCceEEeeecccCCCCchhhhcCCCCc----eEEecc
Q 036414           78 HSGVSKSLCELHKLECLKLANQGKMW--QITRMIL-SEYKFPPSLTQLSLSNTELIEDPMPTLEKLPHLE----VLKLKQ  150 (252)
Q Consensus        78 ~~~~~~~l~~l~~L~~L~l~~~~~~~--~~~~l~~-~~~~~~~~L~~l~l~~~~~~~~~~~~l~~~~~L~----~L~l~~  150 (252)
                      ....+..+..+++|++|++++ +.+.  .    +| .+..+ ++|++|++++|.++...+..+..+++|+    .+++++
T Consensus       113 ~~~~~~~~~~l~~L~~L~l~~-n~l~~~~----l~~~~~~l-~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~l~l~L~ls~  186 (276)
T 2z62_A          113 ASLENFPIGHLKTLKELNVAH-NLIQSFK----LPEYFSNL-TNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSL  186 (276)
T ss_dssp             CCSTTCCCTTCTTCCEEECCS-SCCCCCC----CCGGGGGC-TTCCEEECCSSCCCEECGGGGHHHHTCTTCCEEEECCS
T ss_pred             cccCchhcccCCCCCEEECcC-Cccceec----CchhhccC-CCCCEEECCCCCCCcCCHHHhhhhhhccccceeeecCC
Confidence            333333688899999999998 4442  3    45 77888 9999999999999876677777666666    899988


Q ss_pred             CCccCceeeecCCCCCccccEEEecCCccccceecc-ccccccccceeeccCCCCCCC
Q 036414          151 NSYFERKLACVGCSSFPQLKILHLKSMLWLEEWTMG-AGAMPKLESLILNPCAYLRKL  207 (252)
Q Consensus       151 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~-~~~l~~L~~L~l~~~~~~~~~  207 (252)
                      |.+.....  . .....+|+.|++++|. ++.++.. ++.+++|+.|++++|+.....
T Consensus       187 n~l~~~~~--~-~~~~~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~l~~N~~~c~c  240 (276)
T 2z62_A          187 NPMNFIQP--G-AFKEIRLKELALDTNQ-LKSVPDGIFDRLTSLQKIWLHTNPWDCSC  240 (276)
T ss_dssp             SCCCEECT--T-SSCSCCEEEEECCSSC-CSCCCTTTTTTCCSCCEEECCSSCBCCCT
T ss_pred             CcccccCc--c-ccCCCcccEEECCCCc-eeecCHhHhcccccccEEEccCCcccccC
Confidence            88765322  2 3345589999999999 8888654 478999999999999876543

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=99.78  E-value=1.8e-19  Score=158.19  Aligned_cols=128  Identities=20%  Similarity=0.231  Sum_probs=76.8

Q ss_pred             CCCcccc-chHHHhhccccEEEecCCCCCCCCCcccCCCCCCcEecccCCCCC---chhhcCCCCCccEEEeeccCCccc
Q 036414            3 SSYIDHS-SEDIWMMQKLMHLNFGSITLPAPPKNYSSSLKNLIFISALHPSSC---TPDILSRLPTVQTLRISGDLSHYH   78 (252)
Q Consensus         3 ~~~l~~l-p~~i~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~~l~~~~~---~~~~l~~l~~L~~L~l~~~~~~~~   78 (252)
                      ++.++.+ |.++..+++|++|++++|.+....|..+.++++|++|+ ++.+..   .+..++.+++|++|++++|.  ..
T Consensus        35 ~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~-Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~--l~  111 (549)
T 2z81_A           35 FNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLD-LSDNHLSSLSSSWFGPLSSLKYLNLMGNP--YQ  111 (549)
T ss_dssp             SSCCCEECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEE-CTTSCCCSCCHHHHTTCTTCCEEECTTCC--CS
T ss_pred             CCccCccChhhhhcCCcccEEECCCCCcCccChhhccccccCCEEE-CCCCccCccCHHHhccCCCCcEEECCCCc--cc
Confidence            3455555 34566677777777776666555556667777777777 666655   23336677777777777764  22


Q ss_pred             c-chhHhhhccCCCCeEEeeeccchhHHHHhhc--cccCCCCCCceEEeeecccCCCCchhhh
Q 036414           79 S-GVSKSLCELHKLECLKLANQGKMWQITRMIL--SEYKFPPSLTQLSLSNTELIEDPMPTLE  138 (252)
Q Consensus        79 ~-~~~~~l~~l~~L~~L~l~~~~~~~~~~~l~~--~~~~~~~~L~~l~l~~~~~~~~~~~~l~  138 (252)
                      . ..+..+..+++|++|++.++..++.    +|  .+..+ ++|++|++++|.+....+..++
T Consensus       112 ~~~~~~~~~~l~~L~~L~L~~n~~~~~----~~~~~~~~l-~~L~~L~L~~n~l~~~~~~~l~  169 (549)
T 2z81_A          112 TLGVTSLFPNLTNLQTLRIGNVETFSE----IRRIDFAGL-TSLNELEIKALSLRNYQSQSLK  169 (549)
T ss_dssp             SSCSSCSCTTCTTCCEEEEEESSSCCE----ECTTTTTTC-CEEEEEEEEETTCCEECTTTTT
T ss_pred             ccchhhhhhccCCccEEECCCCccccc----cCHhhhhcc-cccCeeeccCCcccccChhhhh
Confidence            2 2344566677777777776432333    33  45555 6777777776666544444443

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=99.77  E-value=5.3e-18  Score=136.20  Aligned_cols=175  Identities=23%  Similarity=0.235  Sum_probs=85.8

Q ss_pred             cCCCCCCcEecccCCCCC-chhhcCCCCCccEEEeeccCCccccchhHhhhccCCCCeEEeeeccchhHHHHhhc--ccc
Q 036414           37 SSSLKNLIFISALHPSSC-TPDILSRLPTVQTLRISGDLSHYHSGVSKSLCELHKLECLKLANQGKMWQITRMIL--SEY  113 (252)
Q Consensus        37 l~~l~~L~~L~~l~~~~~-~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~l~~--~~~  113 (252)
                      ...+++|+.|. +..+.. .+..+..+++|++|++++|.   ...+ ..+..+++|++|++.+ +.+..    ++  .+.
T Consensus        37 ~~~l~~L~~L~-l~~~~i~~~~~l~~l~~L~~L~l~~n~---l~~~-~~l~~l~~L~~L~L~~-n~l~~----~~~~~~~  106 (272)
T 3rfs_A           37 QNELNSIDQII-ANNSDIKSVQGIQYLPNVRYLALGGNK---LHDI-SALKELTNLTYLILTG-NQLQS----LPNGVFD  106 (272)
T ss_dssp             HHHHTTCCEEE-CTTSCCCCCTTGGGCTTCCEEECTTSC---CCCC-GGGTTCTTCCEEECTT-SCCCC----CCTTTTT
T ss_pred             cccccceeeee-eCCCCcccccccccCCCCcEEECCCCC---CCCc-hhhcCCCCCCEEECCC-CccCc----cChhHhc
Confidence            34455555555 544444 33345555555555555553   1112 2445555555555555 33333    23  234


Q ss_pred             CCCCCCceEEeeecccCCCCchhhhcCCCCceEEeccCCccCceeeecCCCCCccccEEEecCCccccceecc-cccccc
Q 036414          114 KFPPSLTQLSLSNTELIEDPMPTLEKLPHLEVLKLKQNSYFERKLACVGCSSFPQLKILHLKSMLWLEEWTMG-AGAMPK  192 (252)
Q Consensus       114 ~~~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~-~~~l~~  192 (252)
                      .+ ++|++|++++|.++...+..++.+++|++|++++|.+...... . +..+++|++|++++|. ++.++.. ++.+++
T Consensus       107 ~l-~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~-~-~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~  182 (272)
T 3rfs_A          107 KL-TNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKG-V-FDKLTNLTELDLSYNQ-LQSLPEGVFDKLTQ  182 (272)
T ss_dssp             TC-TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTT-T-TTTCTTCCEEECCSSC-CCCCCTTTTTTCTT
T ss_pred             CC-cCCCEEECCCCcCCccCHHHhccCCCCCEEECCCCccCccCHH-H-hccCccCCEEECCCCC-cCccCHHHhcCCcc
Confidence            44 5555555555555544444455555555555555554432111 1 3445555555555555 4444332 345555


Q ss_pred             ccceeeccCCCCCCChHHHHhccccceeecccC
Q 036414          193 LESLILNPCAYLRKLPEELWRIKSLCKLELHWP  225 (252)
Q Consensus       193 L~~L~l~~~~~~~~~p~~l~~l~~L~~L~l~~~  225 (252)
                      |+.|++++|...+..+..+..+++|++|++.++
T Consensus       183 L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N  215 (272)
T 3rfs_A          183 LKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDN  215 (272)
T ss_dssp             CCEEECCSSCCSCCCTTTTTTCTTCCEEECCSS
T ss_pred             CCEEECCCCcCCccCHHHHhCCcCCCEEEccCC
Confidence            555555555544323333445555555555543

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=99.77  E-value=3.6e-19  Score=146.98  Aligned_cols=213  Identities=17%  Similarity=0.185  Sum_probs=157.6

Q ss_pred             CCCCccccchHHHhhccccEEEecCCCCCCC-CCcccCCCCCCcEecccCCCCC---chhhcCCCCCccEEEeeccCCcc
Q 036414            2 PSSYIDHSSEDIWMMQKLMHLNFGSITLPAP-PKNYSSSLKNLIFISALHPSSC---TPDILSRLPTVQTLRISGDLSHY   77 (252)
Q Consensus         2 ~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~-~~~~l~~l~~L~~L~~l~~~~~---~~~~l~~l~~L~~L~l~~~~~~~   77 (252)
                      .++.++..+..+.++++|++|++++|.+... ++..+..+++|++|+ ++.+..   .+..++.+++|++|++++|....
T Consensus        78 ~~n~l~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~-L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~  156 (336)
T 2ast_B           78 PRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLS-LEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFS  156 (336)
T ss_dssp             TTCEECSCCCSCCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEE-CTTCBCCHHHHHHHTTCTTCSEEECTTCBSCC
T ss_pred             CCccccccchhhccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEe-CcCcccCHHHHHHHhcCCCCCEEECCCCCCCC
Confidence            3456666666677899999999998876544 777789999999999 988876   56678899999999999994222


Q ss_pred             ccchhHhhhccCCCCeEEeeeccchh--HHHHhhc-cccCCCC-CCceEEeeec--ccC-CCCchhhhcCCCCceEEecc
Q 036414           78 HSGVSKSLCELHKLECLKLANQGKMW--QITRMIL-SEYKFPP-SLTQLSLSNT--ELI-EDPMPTLEKLPHLEVLKLKQ  150 (252)
Q Consensus        78 ~~~~~~~l~~l~~L~~L~l~~~~~~~--~~~~l~~-~~~~~~~-~L~~l~l~~~--~~~-~~~~~~l~~~~~L~~L~l~~  150 (252)
                      ...++..+..+++|++|++.+|..+.  .    ++ .+..+ + +|++|++++|  .++ ...+..++.+++|++|++++
T Consensus       157 ~~~l~~~~~~~~~L~~L~l~~~~~l~~~~----~~~~~~~l-~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~  231 (336)
T 2ast_B          157 EFALQTLLSSCSRLDELNLSWCFDFTEKH----VQVAVAHV-SETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSD  231 (336)
T ss_dssp             HHHHHHHHHHCTTCCEEECCCCTTCCHHH----HHHHHHHS-CTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTT
T ss_pred             HHHHHHHHhcCCCCCEEcCCCCCCcChHH----HHHHHHhc-ccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeCCC
Confidence            23577778999999999999953552  2    34 56777 7 9999999999  444 34456778899999999999


Q ss_pred             CC-ccCceeeecCCCCCccccEEEecCCccccce-eccccccccccceeeccCCCCCCChHHHHhccccceeecccC
Q 036414          151 NS-YFERKLACVGCSSFPQLKILHLKSMLWLEEW-TMGAGAMPKLESLILNPCAYLRKLPEELWRIKSLCKLELHWP  225 (252)
Q Consensus       151 ~~-~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~-~~~~~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~l~~~  225 (252)
                      |. +++..+. . ...+++|++|++++|..+... ...++.+++|+.|++++| ........+.  .+++.|++.++
T Consensus       232 ~~~l~~~~~~-~-l~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~-i~~~~~~~l~--~~l~~L~l~~n  303 (336)
T 2ast_B          232 SVMLKNDCFQ-E-FFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI-VPDGTLQLLK--EALPHLQINCS  303 (336)
T ss_dssp             CTTCCGGGGG-G-GGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS-SCTTCHHHHH--HHSTTSEESCC
T ss_pred             CCcCCHHHHH-H-HhCCCCCCEeeCCCCCCCCHHHHHHHhcCCCCCEEeccCc-cCHHHHHHHH--hhCcceEEecc
Confidence            88 4443333 3 668899999999999744422 224677999999999999 4333323332  23555566544

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=99.76  E-value=3.6e-18  Score=139.67  Aligned_cols=198  Identities=19%  Similarity=0.162  Sum_probs=153.8

Q ss_pred             hhccccEEEecCCCCCCCCCccc--CCCCCCcEecccCCCCCc---h----hhcCCCCCccEEEeeccCCccccchhHhh
Q 036414           15 MMQKLMHLNFGSITLPAPPKNYS--SSLKNLIFISALHPSSCT---P----DILSRLPTVQTLRISGDLSHYHSGVSKSL   85 (252)
Q Consensus        15 ~l~~L~~L~l~~~~~~~~~~~~l--~~l~~L~~L~~l~~~~~~---~----~~l~~l~~L~~L~l~~~~~~~~~~~~~~l   85 (252)
                      .+++|++|++++|.+....|..+  ..+++|++|+ ++.+.+.   +    ..+..+++|++|++++|.  .....+..+
T Consensus        89 ~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~-Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~--l~~~~~~~~  165 (310)
T 4glp_A           89 AYSRLKELTLEDLKITGTMPPLPLEATGLALSSLR-LRNVSWATGRSWLAELQQWLKPGLKVLSIAQAH--SPAFSCEQV  165 (310)
T ss_dssp             HHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCE-EESCCCSSTTSSHHHHHTTBCSCCCEEEEECCS--SCCCCTTSC
T ss_pred             ccCceeEEEeeCCEeccchhhhhhhccCCCCCEEE-eecccccchhhhhHHHHhhhccCCCEEEeeCCC--cchhhHHHh
Confidence            45679999999998888888877  8999999999 8888762   1    335679999999999997  555556788


Q ss_pred             hccCCCCeEEeeeccchh--HHHHhhc---cccCCCCCCceEEeeecccCCCCch----hhhcCCCCceEEeccCCccCc
Q 036414           86 CELHKLECLKLANQGKMW--QITRMIL---SEYKFPPSLTQLSLSNTELIEDPMP----TLEKLPHLEVLKLKQNSYFER  156 (252)
Q Consensus        86 ~~l~~L~~L~l~~~~~~~--~~~~l~~---~~~~~~~~L~~l~l~~~~~~~~~~~----~l~~~~~L~~L~l~~~~~~~~  156 (252)
                      ..+++|++|++++|.-.+  .    ++   .+..+ ++|++|++++|.++. .+.    .++.+++|++|++++|.+...
T Consensus       166 ~~l~~L~~L~Ls~N~l~~~~~----~~~~~~~~~l-~~L~~L~Ls~N~l~~-l~~~~~~l~~~l~~L~~L~Ls~N~l~~~  239 (310)
T 4glp_A          166 RAFPALTSLDLSDNPGLGERG----LMAALCPHKF-PAIQNLALRNTGMET-PTGVCAALAAAGVQPHSLDLSHNSLRAT  239 (310)
T ss_dssp             CCCTTCCEEECCSCTTCHHHH----HHTTSCTTSS-CCCCSCBCCSSCCCC-HHHHHHHHHHHTCCCSSEECTTSCCCCC
T ss_pred             ccCCCCCEEECCCCCCccchh----hhHHHhhhcC-CCCCEEECCCCCCCc-hHHHHHHHHhcCCCCCEEECCCCCCCcc
Confidence            899999999999943221  2    22   34677 999999999999862 232    357889999999999998764


Q ss_pred             eee-ecCCCCCccccEEEecCCccccceeccccccccccceeeccCCCCCCChHHHHhccccceeecccCC
Q 036414          157 KLA-CVGCSSFPQLKILHLKSMLWLEEWTMGAGAMPKLESLILNPCAYLRKLPEELWRIKSLCKLELHWPQ  226 (252)
Q Consensus       157 ~~~-~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~l~~~~  226 (252)
                      .+. +.....+++|++|++++|+ ++.++...  +++|+.|++++|... .+|. ...+++|++|++++++
T Consensus       240 ~p~~~~~~~~~~~L~~L~Ls~N~-l~~lp~~~--~~~L~~L~Ls~N~l~-~~~~-~~~l~~L~~L~L~~N~  305 (310)
T 4glp_A          240 VNPSAPRCMWSSALNSLNLSFAG-LEQVPKGL--PAKLRVLDLSSNRLN-RAPQ-PDELPEVDNLTLDGNP  305 (310)
T ss_dssp             CCSCCSSCCCCTTCCCEECCSSC-CCSCCSCC--CSCCSCEECCSCCCC-SCCC-TTSCCCCSCEECSSTT
T ss_pred             chhhHHhccCcCcCCEEECCCCC-CCchhhhh--cCCCCEEECCCCcCC-CCch-hhhCCCccEEECcCCC
Confidence            322 1102334899999999999 88887655  389999999999875 4444 5678999999998875

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=99.76  E-value=5.9e-19  Score=154.06  Aligned_cols=196  Identities=20%  Similarity=0.219  Sum_probs=151.0

Q ss_pred             hccccEEEecCCCCCCCCCccc-----CCCCCCcEecccCCCCC-ch-------------------------hh-cCCCC
Q 036414           16 MQKLMHLNFGSITLPAPPKNYS-----SSLKNLIFISALHPSSC-TP-------------------------DI-LSRLP   63 (252)
Q Consensus        16 l~~L~~L~l~~~~~~~~~~~~l-----~~l~~L~~L~~l~~~~~-~~-------------------------~~-l~~l~   63 (252)
                      +++|++|++++|.+...+|..+     ..+++|+.++ +..+.. +|                         .. ...++
T Consensus       246 ~~~L~~L~l~~n~l~~~~p~~~~~~~~~~l~~L~~l~-l~~n~~~~p~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~l~  324 (520)
T 2z7x_B          246 HTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQ-VVSDVFGFPQSYIYEIFSNMNIKNFTVSGTRMVHMLCPSKIS  324 (520)
T ss_dssp             TSSCSEEEEEEEEEESCCCCCCCCCCSCCCCEEEEEE-EEECCCCSCTHHHHHHHHTCCCSEEEEESSCCCCCCCCSSCC
T ss_pred             hCcccEEEeecccccCccccchhhcccccCceeEecc-ccccceecchhhhhcccccCceeEEEcCCCccccccchhhCC
Confidence            3577778877666665666666     6666666665 444432 11                         11 16789


Q ss_pred             CccEEEeeccCCccccchhHhhhccCCCCeEEeeeccchh---HHHHhhc-cccCCCCCCceEEeeecccCCCCch-hhh
Q 036414           64 TVQTLRISGDLSHYHSGVSKSLCELHKLECLKLANQGKMW---QITRMIL-SEYKFPPSLTQLSLSNTELIEDPMP-TLE  138 (252)
Q Consensus        64 ~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~---~~~~l~~-~~~~~~~~L~~l~l~~~~~~~~~~~-~l~  138 (252)
                      +|++|++++|.  .....|..+..+++|++|++++ +.+.   .    +| .+..+ ++|++|++++|.+....+. .+.
T Consensus       325 ~L~~L~Ls~n~--l~~~~~~~~~~l~~L~~L~L~~-N~l~~l~~----~~~~~~~l-~~L~~L~Ls~N~l~~~l~~~~~~  396 (520)
T 2z7x_B          325 PFLHLDFSNNL--LTDTVFENCGHLTELETLILQM-NQLKELSK----IAEMTTQM-KSLQQLDISQNSVSYDEKKGDCS  396 (520)
T ss_dssp             CCCEEECCSSC--CCTTTTTTCCCCSSCCEEECCS-SCCCBHHH----HHHHHTTC-TTCCEEECCSSCCBCCGGGCSCC
T ss_pred             cccEEEeECCc--cChhhhhhhccCCCCCEEEccC-CccCcccc----chHHHhhC-CCCCEEECCCCcCCcccccchhc
Confidence            99999999997  6666788889999999999998 4442   4    55 67888 9999999999999864554 477


Q ss_pred             cCCCCceEEeccCCccCceeeecCCCCCccccEEEecCCccccceeccccccccccceeeccCCCCCCChHH-HHhcccc
Q 036414          139 KLPHLEVLKLKQNSYFERKLACVGCSSFPQLKILHLKSMLWLEEWTMGAGAMPKLESLILNPCAYLRKLPEE-LWRIKSL  217 (252)
Q Consensus       139 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~~~~~~~~p~~-l~~l~~L  217 (252)
                      .+++|++|++++|.+.+..+. . .  .++|+.|++++|+ ++.++.....+++|+.|++++|... .+|.. +..+++|
T Consensus       397 ~l~~L~~L~Ls~N~l~~~~~~-~-l--~~~L~~L~Ls~N~-l~~ip~~~~~l~~L~~L~L~~N~l~-~l~~~~~~~l~~L  470 (520)
T 2z7x_B          397 WTKSLLSLNMSSNILTDTIFR-C-L--PPRIKVLDLHSNK-IKSIPKQVVKLEALQELNVASNQLK-SVPDGIFDRLTSL  470 (520)
T ss_dssp             CCTTCCEEECCSSCCCGGGGG-S-C--CTTCCEEECCSSC-CCCCCGGGGGCTTCCEEECCSSCCC-CCCTTTTTTCTTC
T ss_pred             cCccCCEEECcCCCCCcchhh-h-h--cccCCEEECCCCc-ccccchhhhcCCCCCEEECCCCcCC-ccCHHHhccCCcc
Confidence            889999999999988653332 1 2  1799999999998 8899888889999999999999875 68775 7889999


Q ss_pred             ceeecccCC
Q 036414          218 CKLELHWPQ  226 (252)
Q Consensus       218 ~~L~l~~~~  226 (252)
                      ++|++++++
T Consensus       471 ~~L~l~~N~  479 (520)
T 2z7x_B          471 QKIWLHTNP  479 (520)
T ss_dssp             CEEECCSSC
T ss_pred             cEEECcCCC
Confidence            999999875

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=99.76  E-value=1.3e-18  Score=152.87  Aligned_cols=189  Identities=17%  Similarity=0.102  Sum_probs=147.4

Q ss_pred             CCCccccchHHHhhccccEEEecCCCCCCCCCcccCCCCCCcEecccCCCCC---chhhcCCCCCccEEEeeccCCcccc
Q 036414            3 SSYIDHSSEDIWMMQKLMHLNFGSITLPAPPKNYSSSLKNLIFISALHPSSC---TPDILSRLPTVQTLRISGDLSHYHS   79 (252)
Q Consensus         3 ~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~~l~~~~~---~~~~l~~l~~L~~L~l~~~~~~~~~   79 (252)
                      ++.++++|..+.  ++|++|++++|.+....|..+.++++|++|+ ++.+..   .+..++.+++|++|++++|.  ...
T Consensus        14 ~~~l~~ip~~~~--~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~-Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~--l~~   88 (549)
T 2z81_A           14 SRSFTSIPSGLT--AAMKSLDLSFNKITYIGHGDLRACANLQVLI-LKSSRINTIEGDAFYSLGSLEHLDLSDNH--LSS   88 (549)
T ss_dssp             TSCCSSCCSCCC--TTCCEEECCSSCCCEECSSTTSSCTTCCEEE-CTTSCCCEECTTTTTTCTTCCEEECTTSC--CCS
T ss_pred             CCccccccccCC--CCccEEECcCCccCccChhhhhcCCcccEEE-CCCCCcCccChhhccccccCCEEECCCCc--cCc
Confidence            467889998765  7899999998887776778899999999999 998887   45668999999999999996  555


Q ss_pred             chhHhhhccCCCCeEEeeeccchh--HHHHhhc-cccCCCCCCceEEeeecc-cCCCCchhhhcCCCCceEEeccCCccC
Q 036414           80 GVSKSLCELHKLECLKLANQGKMW--QITRMIL-SEYKFPPSLTQLSLSNTE-LIEDPMPTLEKLPHLEVLKLKQNSYFE  155 (252)
Q Consensus        80 ~~~~~l~~l~~L~~L~l~~~~~~~--~~~~l~~-~~~~~~~~L~~l~l~~~~-~~~~~~~~l~~~~~L~~L~l~~~~~~~  155 (252)
                      ..+..+..+++|++|++++ +.+.  .    .| .+..+ ++|++|++++|. +....+..++.+++|++|++++|.+.+
T Consensus        89 ~~~~~~~~l~~L~~L~Ls~-n~l~~~~----~~~~~~~l-~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~  162 (549)
T 2z81_A           89 LSSSWFGPLSSLKYLNLMG-NPYQTLG----VTSLFPNL-TNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRN  162 (549)
T ss_dssp             CCHHHHTTCTTCCEEECTT-CCCSSSC----SSCSCTTC-TTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCE
T ss_pred             cCHHHhccCCCCcEEECCC-Ccccccc----hhhhhhcc-CCccEEECCCCccccccCHhhhhcccccCeeeccCCcccc
Confidence            5566699999999999998 5553  2    34 67888 999999999998 443444678999999999999988765


Q ss_pred             ceeeecCCCCCccccEEEecCCccccceecc-ccccccccceeeccCCCCC
Q 036414          156 RKLACVGCSSFPQLKILHLKSMLWLEEWTMG-AGAMPKLESLILNPCAYLR  205 (252)
Q Consensus       156 ~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~-~~~l~~L~~L~l~~~~~~~  205 (252)
                      ... .. .+.+++|++|++++|. ...++.. .+.+++|+.|++++|...+
T Consensus       163 ~~~-~~-l~~l~~L~~L~l~~n~-~~~~~~~~~~~l~~L~~L~L~~n~l~~  210 (549)
T 2z81_A          163 YQS-QS-LKSIRDIHHLTLHLSE-SAFLLEIFADILSSVRYLELRDTNLAR  210 (549)
T ss_dssp             ECT-TT-TTTCSEEEEEEEECSB-STTHHHHHHHSTTTBSEEEEESCBCTT
T ss_pred             cCh-hh-hhccccCceEecccCc-ccccchhhHhhcccccEEEccCCcccc
Confidence            332 23 6677888888888777 5544332 2457778888887776543

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=99.76  E-value=4.5e-18  Score=149.94  Aligned_cols=91  Identities=16%  Similarity=0.177  Sum_probs=59.4

Q ss_pred             CCCccccc-hHHHhhccccEEEecCCCCCCCCCcccCCCCCCcEecccCCCCC--chhhcCCCCCccEEEeeccCCcccc
Q 036414            3 SSYIDHSS-EDIWMMQKLMHLNFGSITLPAPPKNYSSSLKNLIFISALHPSSC--TPDILSRLPTVQTLRISGDLSHYHS   79 (252)
Q Consensus         3 ~~~l~~lp-~~i~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~~l~~~~~--~~~~l~~l~~L~~L~l~~~~~~~~~   79 (252)
                      ++.++.+| .++..+++|++|++++|.+....|..+.++++|++|+ ++.|.+  +|..  .+++|++|++++|.  ...
T Consensus        61 ~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~-Ls~N~l~~lp~~--~l~~L~~L~Ls~N~--l~~  135 (562)
T 3a79_B           61 QNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLD-VSHNRLQNISCC--PMASLRHLDLSFND--FDV  135 (562)
T ss_dssp             SSCCCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEE-CTTSCCCEECSC--CCTTCSEEECCSSC--CSB
T ss_pred             CCCccccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEE-CCCCcCCccCcc--ccccCCEEECCCCC--ccc
Confidence            45666665 3577777777777776666655566677777777777 776665  3333  57777777777774  222


Q ss_pred             -chhHhhhccCCCCeEEeee
Q 036414           80 -GVSKSLCELHKLECLKLAN   98 (252)
Q Consensus        80 -~~~~~l~~l~~L~~L~l~~   98 (252)
                       ..|..+.++++|++|++++
T Consensus       136 l~~p~~~~~l~~L~~L~L~~  155 (562)
T 3a79_B          136 LPVCKEFGNLTKLTFLGLSA  155 (562)
T ss_dssp             CCCCGGGGGCTTCCEEEEEC
T ss_pred             cCchHhhcccCcccEEecCC
Confidence             2345667777777777776

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=99.76  E-value=1e-18  Score=153.96  Aligned_cols=208  Identities=16%  Similarity=0.171  Sum_probs=156.9

Q ss_pred             cccchHHHhhccccEEEecCCCCCCCCCcccCCCCCCcEecccCCCCC--chhh--------------------cCCCCC
Q 036414            7 DHSSEDIWMMQKLMHLNFGSITLPAPPKNYSSSLKNLIFISALHPSSC--TPDI--------------------LSRLPT   64 (252)
Q Consensus         7 ~~lp~~i~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~~l~~~~~--~~~~--------------------l~~l~~   64 (252)
                      +.+|..+..+++|++|+++++... .+|..+..+ +|++|+ +..+..  ++..                    ...+++
T Consensus       272 ~~~~~~~~~l~~L~~L~l~~~~l~-~l~~~~~~~-~L~~L~-l~~n~~~~l~~~~l~~L~~L~l~~n~~~~~~~~~~~~~  348 (570)
T 2z63_A          272 DDIIDLFNCLTNVSSFSLVSVTIE-RVKDFSYNF-GWQHLE-LVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFSEVDLPS  348 (570)
T ss_dssp             SCSTTTTGGGTTCSEEEEESCEEC-SCCBCCSCC-CCSEEE-EESCBCSSCCBCBCSSCCEEEEESCBSCCBCCCCBCTT
T ss_pred             hhchhhhcCcCcccEEEecCccch-hhhhhhccC-CccEEe-eccCcccccCcccccccCEEeCcCCccccccccccCCC
Confidence            445777899999999999977655 688888888 899998 777665  2221                    134566


Q ss_pred             ccEEEeeccCCccccchhHhhhccCCCCeEEeeeccchhHHHHhhc-cccCCCCCCceEEeeecccCCCCc-hhhhcCCC
Q 036414           65 VQTLRISGDLSHYHSGVSKSLCELHKLECLKLANQGKMWQITRMIL-SEYKFPPSLTQLSLSNTELIEDPM-PTLEKLPH  142 (252)
Q Consensus        65 L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~l~~-~~~~~~~~L~~l~l~~~~~~~~~~-~~l~~~~~  142 (252)
                      |++|++++|.-......+..+..+++|++|++.+ +.+..    ++ .+..+ ++|++|++++|.+....+ ..+..+++
T Consensus       349 L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~-n~l~~----~~~~~~~l-~~L~~L~l~~n~l~~~~~~~~~~~l~~  422 (570)
T 2z63_A          349 LEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSF-NGVIT----MSSNFLGL-EQLEHLDFQHSNLKQMSEFSVFLSLRN  422 (570)
T ss_dssp             CCEEECCSSCCBEEEEEEHHHHTCSCCCEEECCS-CSEEE----EEEEEETC-TTCCEEECTTSEEESCTTSCTTTTCTT
T ss_pred             CCEEeCcCCccCccccccccccccCccCEEECCC-Ccccc----cccccccc-CCCCEEEccCCccccccchhhhhcCCC
Confidence            7777776664111112256677888888888887 44434    44 56777 999999999998876555 56788999


Q ss_pred             CceEEeccCCccCceeeecCCCCCccccEEEecCCcccc--ceeccccccccccceeeccCCCCCCChHHHHhcccccee
Q 036414          143 LEVLKLKQNSYFERKLACVGCSSFPQLKILHLKSMLWLE--EWTMGAGAMPKLESLILNPCAYLRKLPEELWRIKSLCKL  220 (252)
Q Consensus       143 L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~--~~~~~~~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L  220 (252)
                      |+.|++++|.+..... .. +.++++|++|++++|. +.  .++..++.+++|+.|++++|...+..|..+..+++|++|
T Consensus       423 L~~L~l~~n~l~~~~~-~~-~~~l~~L~~L~l~~n~-l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L  499 (570)
T 2z63_A          423 LIYLDISHTHTRVAFN-GI-FNGLSSLEVLKMAGNS-FQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVL  499 (570)
T ss_dssp             CCEEECTTSCCEECCT-TT-TTTCTTCCEEECTTCE-EGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEE
T ss_pred             CCEEeCcCCcccccch-hh-hhcCCcCcEEECcCCc-CccccchhhhhcccCCCEEECCCCccccCChhhhhcccCCCEE
Confidence            9999999887755322 23 6789999999999999 65  477788899999999999998876567788899999999


Q ss_pred             ecccCC
Q 036414          221 ELHWPQ  226 (252)
Q Consensus       221 ~l~~~~  226 (252)
                      +++++.
T Consensus       500 ~l~~n~  505 (570)
T 2z63_A          500 NMASNQ  505 (570)
T ss_dssp             ECCSSC
T ss_pred             eCCCCc
Confidence            999874

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=99.76  E-value=1.3e-17  Score=143.47  Aligned_cols=174  Identities=18%  Similarity=0.096  Sum_probs=82.1

Q ss_pred             CCCccccchHHHhhccccEEEecCCCCCCCCCcccCCCCCCcEecccCCCCCchhhcCCCCCccEEEeeccCCccccchh
Q 036414            3 SSYIDHSSEDIWMMQKLMHLNFGSITLPAPPKNYSSSLKNLIFISALHPSSCTPDILSRLPTVQTLRISGDLSHYHSGVS   82 (252)
Q Consensus         3 ~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~~l~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~   82 (252)
                      ++.++.+| ++..+++|++|++++|.+.. +|  +..+++|++|+ ++.+.+.-..++.+++|++|++++|.   ...++
T Consensus        51 ~n~l~~~~-~l~~l~~L~~L~Ls~n~l~~-~~--~~~l~~L~~L~-Ls~N~l~~~~~~~l~~L~~L~L~~N~---l~~l~  122 (457)
T 3bz5_A           51 NSSITDMT-GIEKLTGLTKLICTSNNITT-LD--LSQNTNLTYLA-CDSNKLTNLDVTPLTKLTYLNCDTNK---LTKLD  122 (457)
T ss_dssp             SSCCCCCT-TGGGCTTCSEEECCSSCCSC-CC--CTTCTTCSEEE-CCSSCCSCCCCTTCTTCCEEECCSSC---CSCCC
T ss_pred             CCCcccCh-hhcccCCCCEEEccCCcCCe-Ec--cccCCCCCEEE-CcCCCCceeecCCCCcCCEEECCCCc---CCeec
Confidence            34555555 45666666666666554433 22  55566666666 55555411125556666666666553   12222


Q ss_pred             HhhhccCCCCeEEeeeccchhHHHHhhc---------------------cccCCCCCCceEEeeecccCCCCchhhhcCC
Q 036414           83 KSLCELHKLECLKLANQGKMWQITRMIL---------------------SEYKFPPSLTQLSLSNTELIEDPMPTLEKLP  141 (252)
Q Consensus        83 ~~l~~l~~L~~L~l~~~~~~~~~~~l~~---------------------~~~~~~~~L~~l~l~~~~~~~~~~~~l~~~~  141 (252)
                        +..+++|++|++++ +.+..    ++                     .+..+ ++|++|++++|.++.. +  ++.++
T Consensus       123 --~~~l~~L~~L~l~~-N~l~~----l~l~~l~~L~~L~l~~n~~~~~~~~~~l-~~L~~L~ls~n~l~~l-~--l~~l~  191 (457)
T 3bz5_A          123 --VSQNPLLTYLNCAR-NTLTE----IDVSHNTQLTELDCHLNKKITKLDVTPQ-TQLTTLDCSFNKITEL-D--VSQNK  191 (457)
T ss_dssp             --CTTCTTCCEEECTT-SCCSC----CCCTTCTTCCEEECTTCSCCCCCCCTTC-TTCCEEECCSSCCCCC-C--CTTCT
T ss_pred             --CCCCCcCCEEECCC-Cccce----eccccCCcCCEEECCCCCcccccccccC-CcCCEEECCCCcccee-c--cccCC
Confidence              44555555555555 22211    11                     12222 3444444444444321 1  33444


Q ss_pred             CCceEEeccCCccCceeeecCCCCCccccEEEecCCccccceeccccccccccceeeccCCC
Q 036414          142 HLEVLKLKQNSYFERKLACVGCSSFPQLKILHLKSMLWLEEWTMGAGAMPKLESLILNPCAY  203 (252)
Q Consensus       142 ~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~~~~  203 (252)
                      +|+.|++++|.+...    . .+.+++|++|++++|+ +++++  .+.+++|+.|++++|..
T Consensus       192 ~L~~L~l~~N~l~~~----~-l~~l~~L~~L~Ls~N~-l~~ip--~~~l~~L~~L~l~~N~l  245 (457)
T 3bz5_A          192 LLNRLNCDTNNITKL----D-LNQNIQLTFLDCSSNK-LTEID--VTPLTQLTYFDCSVNPL  245 (457)
T ss_dssp             TCCEEECCSSCCSCC----C-CTTCTTCSEEECCSSC-CSCCC--CTTCTTCSEEECCSSCC
T ss_pred             CCCEEECcCCcCCee----c-cccCCCCCEEECcCCc-ccccC--ccccCCCCEEEeeCCcC
Confidence            444444444444331    1 3345555555555555 44443  44455555555555544

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=99.76  E-value=3.9e-18  Score=153.46  Aligned_cols=213  Identities=16%  Similarity=0.171  Sum_probs=129.3

Q ss_pred             CCCccccch-HHHhhccccEEEecCCCCCCCCCcccCCCCCCcEecccCCCCC--chh-hcCCCCCccEEEeeccCCccc
Q 036414            3 SSYIDHSSE-DIWMMQKLMHLNFGSITLPAPPKNYSSSLKNLIFISALHPSSC--TPD-ILSRLPTVQTLRISGDLSHYH   78 (252)
Q Consensus         3 ~~~l~~lp~-~i~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~~l~~~~~--~~~-~l~~l~~L~~L~l~~~~~~~~   78 (252)
                      ++.++.+|. ++.++++|++|++++|.+....|..+.++++|++|+ ++.+..  ++. .++++++|++|++++|.  ..
T Consensus        34 ~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~-L~~n~l~~l~~~~~~~l~~L~~L~L~~n~--l~  110 (680)
T 1ziw_A           34 HNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLN-LQHNELSQLSDKTFAFCTNLTELHLMSNS--IQ  110 (680)
T ss_dssp             SSCCCCCCGGGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEE-CCSSCCCCCCTTTTTTCTTCSEEECCSSC--CC
T ss_pred             CCCCCCcCHHHHhCCCcCcEEECCCCccCccCHHHHhcccCcCEEE-CCCCccCccChhhhccCCCCCEEECCCCc--cC
Confidence            456666665 477777788888877766666666677777777777 776665  343 36777777777777774  33


Q ss_pred             cchhHhhhccCCCCeEEeeeccchhHHHHhhc-cccCCCCCCceEEeeecccCCCCchhhh--cCCCCceEEeccCCccC
Q 036414           79 SGVSKSLCELHKLECLKLANQGKMWQITRMIL-SEYKFPPSLTQLSLSNTELIEDPMPTLE--KLPHLEVLKLKQNSYFE  155 (252)
Q Consensus        79 ~~~~~~l~~l~~L~~L~l~~~~~~~~~~~l~~-~~~~~~~~L~~l~l~~~~~~~~~~~~l~--~~~~L~~L~l~~~~~~~  155 (252)
                      ...+..+.++++|++|++++ +.+...   .+ .+..+ ++|++|++++|.++...+..++  .+++|+.|++++|.+.+
T Consensus       111 ~~~~~~~~~l~~L~~L~Ls~-n~l~~~---~~~~~~~l-~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~  185 (680)
T 1ziw_A          111 KIKNNPFVKQKNLITLDLSH-NGLSST---KLGTQVQL-ENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKE  185 (680)
T ss_dssp             CCCSCTTTTCTTCCEEECCS-SCCSCC---CCCSSSCC-TTCCEEECCSSCCCCBCHHHHGGGTTCEESEEECTTCCCCC
T ss_pred             ccChhHccccCCCCEEECCC-Cccccc---Cchhhccc-ccCCEEEccCCcccccCHHHhhccccccccEEECCCCcccc
Confidence            33335667777777777777 333220   23 45555 7777777777766654444443  34566666666554432


Q ss_pred             ceee--------------------------------------------------ecCCCCC--ccccEEEecCCccccce
Q 036414          156 RKLA--------------------------------------------------CVGCSSF--PQLKILHLKSMLWLEEW  183 (252)
Q Consensus       156 ~~~~--------------------------------------------------~~~~~~~--~~L~~L~l~~~~~l~~~  183 (252)
                      ....                                                  .. +.++  ++|++|++++|. ++.+
T Consensus       186 ~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~-~~~l~~~~L~~L~Ls~n~-l~~~  263 (680)
T 1ziw_A          186 FSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTT-FLGLKWTNLTMLDLSYNN-LNVV  263 (680)
T ss_dssp             BCTTGGGGSSEECEEECTTCCCHHHHHHHHHHHHTTSCCCEEECTTSCCCEECTTT-TGGGGGSCCCEEECTTSC-CCEE
T ss_pred             cChhhhhhhhhhhhhhccccccChhhHHHHHHHhhhccccEEEccCCcccccChhH-hhccCcCCCCEEECCCCC-cCcc
Confidence            1110                                                  00 1122  236666666666 5544


Q ss_pred             e-ccccccccccceeeccCCCCCCChHHHHhccccceeecccC
Q 036414          184 T-MGAGAMPKLESLILNPCAYLRKLPEELWRIKSLCKLELHWP  225 (252)
Q Consensus       184 ~-~~~~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~l~~~  225 (252)
                      + ..++.+++|+.|++++|...+..|..+..+++|++|++.++
T Consensus       264 ~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~~  306 (680)
T 1ziw_A          264 GNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRS  306 (680)
T ss_dssp             CTTTTTTCTTCCEEECCSCCBSEECTTTTTTCTTCCEEECTTC
T ss_pred             CcccccCcccccEeeCCCCccCccChhhhcCCCCccEEeccch
Confidence            2 34566677777777777665545555666777777777653

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=99.75  E-value=5.8e-18  Score=155.90  Aligned_cols=92  Identities=16%  Similarity=0.113  Sum_probs=69.0

Q ss_pred             Ccccc-chHHHhhccccEEEecCCCCCCCCCcccCCCCCCcEecccCCCCC---chhh--cCCCCCccEEEeeccCCccc
Q 036414            5 YIDHS-SEDIWMMQKLMHLNFGSITLPAPPKNYSSSLKNLIFISALHPSSC---TPDI--LSRLPTVQTLRISGDLSHYH   78 (252)
Q Consensus         5 ~l~~l-p~~i~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~~l~~~~~---~~~~--l~~l~~L~~L~l~~~~~~~~   78 (252)
                      .+..+ |.++.++++|++|++++|.+....|..+.++++|++|+ ++.|..   .+..  ++.+++|++|++++|.  ..
T Consensus        60 ~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~-Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~--l~  136 (844)
T 3j0a_A           60 TPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELR-LYFCGLSDAVLKDGYFRNLKALTRLDLSKNQ--IR  136 (844)
T ss_dssp             CCCEECTTTTSSCTTCCEEECTTCCCCEECTTSSCSCSSCCCEE-CTTCCCSSCCSTTCCCSSCSSCCEEEEESCC--CC
T ss_pred             CccccCHHHhcCCCCCCEEECCCCcCcccCHhHccCCcccCEee-CcCCCCCcccccCccccccCCCCEEECCCCc--cc
Confidence            34566 66788888899999988877777788888888888888 887766   2444  7788888888888885  33


Q ss_pred             cch-hHhhhccCCCCeEEeeec
Q 036414           79 SGV-SKSLCELHKLECLKLANQ   99 (252)
Q Consensus        79 ~~~-~~~l~~l~~L~~L~l~~~   99 (252)
                      ... +..+.++++|++|++.++
T Consensus       137 ~~~~~~~~~~L~~L~~L~Ls~N  158 (844)
T 3j0a_A          137 SLYLHPSFGKLNSLKSIDFSSN  158 (844)
T ss_dssp             CCCCCGGGGTCSSCCEEEEESS
T ss_pred             ccccchhHhhCCCCCEEECCCC
Confidence            322 346778888888888873

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=99.75  E-value=1.6e-18  Score=142.01  Aligned_cols=185  Identities=18%  Similarity=0.220  Sum_probs=147.5

Q ss_pred             CCcc-ccchHH--HhhccccEEEecCCCCCCCCCcccCCC-----CCCcEecccCCCCC---chhhcCCCCCccEEEeec
Q 036414            4 SYID-HSSEDI--WMMQKLMHLNFGSITLPAPPKNYSSSL-----KNLIFISALHPSSC---TPDILSRLPTVQTLRISG   72 (252)
Q Consensus         4 ~~l~-~lp~~i--~~l~~L~~L~l~~~~~~~~~~~~l~~l-----~~L~~L~~l~~~~~---~~~~l~~l~~L~~L~l~~   72 (252)
                      +.++ .+|..+  ..+++|++|++++|.+... |..+..+     ++|++|+ ++.+..   .+..++.+++|++|++++
T Consensus       105 n~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~-L~~N~l~~~~~~~~~~l~~L~~L~Ls~  182 (312)
T 1wwl_A          105 LEVTGTAPPPLLEATGPDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLS-IAQAHSLNFSCEQVRVFPALSTLDLSD  182 (312)
T ss_dssp             EBCBSCCCCCSSSCCSCCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEE-EESCSCCCCCTTTCCCCSSCCEEECCS
T ss_pred             CcccchhHHHHHHhcCCCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEE-eeCCCCccchHHHhccCCCCCEEECCC
Confidence            4555 678776  8999999999998877665 7777777     8999999 988877   446789999999999999


Q ss_pred             cCCccccc--hhHhh--hccCCCCeEEeeeccchh---HHHHhhc--cccCCCCCCceEEeeecccCCCCc-hhhhcCCC
Q 036414           73 DLSHYHSG--VSKSL--CELHKLECLKLANQGKMW---QITRMIL--SEYKFPPSLTQLSLSNTELIEDPM-PTLEKLPH  142 (252)
Q Consensus        73 ~~~~~~~~--~~~~l--~~l~~L~~L~l~~~~~~~---~~~~l~~--~~~~~~~~L~~l~l~~~~~~~~~~-~~l~~~~~  142 (252)
                      |.  ....  ++..+  ..+++|++|++++ +.+.   .    ++  .+..+ ++|++|++++|.+....+ ..+..+++
T Consensus       183 N~--l~~~~~~~~~~~~~~l~~L~~L~L~~-N~l~~~~~----~~~~~~~~l-~~L~~L~Ls~N~l~~~~~~~~~~~l~~  254 (312)
T 1wwl_A          183 NP--ELGERGLISALCPLKFPTLQVLALRN-AGMETPSG----VCSALAAAR-VQLQGLDLSHNSLRDAAGAPSCDWPSQ  254 (312)
T ss_dssp             CT--TCHHHHHHHHSCTTSCTTCCEEECTT-SCCCCHHH----HHHHHHHTT-CCCSEEECTTSCCCSSCCCSCCCCCTT
T ss_pred             CC--cCcchHHHHHHHhccCCCCCEEECCC-CcCcchHH----HHHHHHhcC-CCCCEEECCCCcCCcccchhhhhhcCC
Confidence            96  3333  44555  7899999999999 5553   3    33  33566 999999999999986654 45567899


Q ss_pred             CceEEeccCCccCceeeecCCCCCccccEEEecCCccccceeccccccccccceeeccCCCCC
Q 036414          143 LEVLKLKQNSYFERKLACVGCSSFPQLKILHLKSMLWLEEWTMGAGAMPKLESLILNPCAYLR  205 (252)
Q Consensus       143 L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~~~~~~  205 (252)
                      |+.|++++|.+..  ++.. ..  ++|++|++++|+ +++++. +..+++|+.|++++|+..+
T Consensus       255 L~~L~Ls~N~l~~--ip~~-~~--~~L~~L~Ls~N~-l~~~p~-~~~l~~L~~L~L~~N~l~~  310 (312)
T 1wwl_A          255 LNSLNLSFTGLKQ--VPKG-LP--AKLSVLDLSYNR-LDRNPS-PDELPQVGNLSLKGNPFLD  310 (312)
T ss_dssp             CCEEECTTSCCSS--CCSS-CC--SEEEEEECCSSC-CCSCCC-TTTSCEEEEEECTTCTTTC
T ss_pred             CCEEECCCCccCh--hhhh-cc--CCceEEECCCCC-CCCChh-HhhCCCCCEEeccCCCCCC
Confidence            9999999999873  3322 33  899999999999 888866 8899999999999998653

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=99.75  E-value=5.1e-19  Score=149.02  Aligned_cols=94  Identities=17%  Similarity=0.177  Sum_probs=64.4

Q ss_pred             CCCccccchHHHhhccccEEEecCCCCCCC----CCcccCCCCCCcEecccCCCCC------chhhc-------CCCCCc
Q 036414            3 SSYIDHSSEDIWMMQKLMHLNFGSITLPAP----PKNYSSSLKNLIFISALHPSSC------TPDIL-------SRLPTV   65 (252)
Q Consensus         3 ~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~----~~~~l~~l~~L~~L~~l~~~~~------~~~~l-------~~l~~L   65 (252)
                      ...+..++..+..+++|++|++++|.+...    ++..+..+++|++|+ ++.+..      .|..+       ..+++|
T Consensus        18 ~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~-Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L   96 (386)
T 2ca6_A           18 TEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAE-FSDIFTGRVKDEIPEALRLLLQALLKCPKL   96 (386)
T ss_dssp             SHHHHTTSHHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEE-CCSCCTTSCGGGSHHHHHHHHHHHTTCTTC
T ss_pred             HHHHHHHHHHHhcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEe-CcccccCccccchhHHHHHHHHHHhhCCcc
Confidence            345567777888888888888887766543    333466788888888 666422      23333       677888


Q ss_pred             cEEEeeccCCcccc----chhHhhhccCCCCeEEeeec
Q 036414           66 QTLRISGDLSHYHS----GVSKSLCELHKLECLKLANQ   99 (252)
Q Consensus        66 ~~L~l~~~~~~~~~----~~~~~l~~l~~L~~L~l~~~   99 (252)
                      ++|++++|.  ...    .++..+..+++|++|++++|
T Consensus        97 ~~L~Ls~n~--l~~~~~~~l~~~l~~~~~L~~L~L~~n  132 (386)
T 2ca6_A           97 HTVRLSDNA--FGPTAQEPLIDFLSKHTPLEHLYLHNN  132 (386)
T ss_dssp             CEEECCSCC--CCTTTHHHHHHHHHHCTTCCEEECCSS
T ss_pred             cEEECCCCc--CCHHHHHHHHHHHHhCCCCCEEECcCC
Confidence            888888875  333    46667777788888888773

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=99.75  E-value=6.8e-18  Score=155.42  Aligned_cols=125  Identities=24%  Similarity=0.257  Sum_probs=67.8

Q ss_pred             CCcccc-chHHHhhccccEEEecCCCCCCCC-CcccCCCCCCcEecccCCCCC---chhhcCCCCCccEEEeeccCCccc
Q 036414            4 SYIDHS-SEDIWMMQKLMHLNFGSITLPAPP-KNYSSSLKNLIFISALHPSSC---TPDILSRLPTVQTLRISGDLSHYH   78 (252)
Q Consensus         4 ~~l~~l-p~~i~~l~~L~~L~l~~~~~~~~~-~~~l~~l~~L~~L~~l~~~~~---~~~~l~~l~~L~~L~l~~~~~~~~   78 (252)
                      +.|+.+ |.++.++++|++|++++|.....+ |..+.++++|++|+ ++.+..   .|..++++++|++|++++|.  ..
T Consensus        34 N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~-Ls~N~l~~~~p~~~~~l~~L~~L~Ls~n~--l~  110 (844)
T 3j0a_A           34 NYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILD-LGSSKIYFLHPDAFQGLFHLFELRLYFCG--LS  110 (844)
T ss_dssp             CCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEE-CTTCCCCEECTTSSCSCSSCCCEECTTCC--CS
T ss_pred             CcCCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEE-CCCCcCcccCHhHccCCcccCEeeCcCCC--CC
Confidence            444444 344566666666666655443333 45566666666666 665554   34556666666666666664  33


Q ss_pred             cchhHh--hhccCCCCeEEeeeccchhHHHHhh--c-cccCCCCCCceEEeeecccCCCCchhh
Q 036414           79 SGVSKS--LCELHKLECLKLANQGKMWQITRMI--L-SEYKFPPSLTQLSLSNTELIEDPMPTL  137 (252)
Q Consensus        79 ~~~~~~--l~~l~~L~~L~l~~~~~~~~~~~l~--~-~~~~~~~~L~~l~l~~~~~~~~~~~~l  137 (252)
                      ...+..  +.++++|++|++++ +.+..    +  + .+.++ ++|++|++++|.+....+..+
T Consensus       111 ~~~~~~~~~~~L~~L~~L~Ls~-N~l~~----~~~~~~~~~L-~~L~~L~Ls~N~i~~~~~~~l  168 (844)
T 3j0a_A          111 DAVLKDGYFRNLKALTRLDLSK-NQIRS----LYLHPSFGKL-NSLKSIDFSSNQIFLVCEHEL  168 (844)
T ss_dssp             SCCSTTCCCSSCSSCCEEEEES-CCCCC----CCCCGGGGTC-SSCCEEEEESSCCCCCCSGGG
T ss_pred             cccccCccccccCCCCEEECCC-Ccccc----cccchhHhhC-CCCCEEECCCCcCCeeCHHHc
Confidence            333333  55666666666666 33311    1  1 35555 666666666666554444333

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=99.75  E-value=8.3e-18  Score=148.25  Aligned_cols=139  Identities=17%  Similarity=0.176  Sum_probs=104.2

Q ss_pred             CCCCccccchHHHhhccccEEEecCCCCCCCCCcccCCCCCCcEecccCCCCC---chhhcCCCCCccEEEeeccCCccc
Q 036414            2 PSSYIDHSSEDIWMMQKLMHLNFGSITLPAPPKNYSSSLKNLIFISALHPSSC---TPDILSRLPTVQTLRISGDLSHYH   78 (252)
Q Consensus         2 ~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~~l~~~~~---~~~~l~~l~~L~~L~l~~~~~~~~   78 (252)
                      .++.++.+|..+.  ++|++|++++|.+....+..+.++++|++|+ ++.+.+   .+..++.+++|++|++++|.   .
T Consensus        39 s~~~L~~ip~~~~--~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~-Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~---l  112 (562)
T 3a79_B           39 SNRNLTHVPKDLP--PRTKALSLSQNSISELRMPDISFLSELRVLR-LSHNRIRSLDFHVFLFNQDLEYLDVSHNR---L  112 (562)
T ss_dssp             TTSCCCSCCTTSC--TTCCEEECCSSCCCCCCGGGTTTCTTCCEEE-CCSCCCCEECTTTTTTCTTCCEEECTTSC---C
T ss_pred             CCCCCccCCCCCC--CCcCEEECCCCCccccChhhhccCCCccEEE-CCCCCCCcCCHHHhCCCCCCCEEECCCCc---C
Confidence            3578888998765  7999999998888776778899999999999 999887   46668999999999999995   4


Q ss_pred             cchhHhhhccCCCCeEEeeeccchhHHHHhhc-cccCCCCCCceEEeeecccCCCCchhhhcCCCCceEEeccCCc
Q 036414           79 SGVSKSLCELHKLECLKLANQGKMWQITRMIL-SEYKFPPSLTQLSLSNTELIEDPMPTLEKLPHLEVLKLKQNSY  153 (252)
Q Consensus        79 ~~~~~~l~~l~~L~~L~l~~~~~~~~~~~l~~-~~~~~~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~  153 (252)
                      ..+|..  .+++|++|++++ +.+..+.  +| .+..+ ++|++|++++|.+.......+..+ +|++|++++|.+
T Consensus       113 ~~lp~~--~l~~L~~L~Ls~-N~l~~l~--~p~~~~~l-~~L~~L~L~~n~l~~~~~~~l~~L-~L~~L~L~~n~l  181 (562)
T 3a79_B          113 QNISCC--PMASLRHLDLSF-NDFDVLP--VCKEFGNL-TKLTFLGLSAAKFRQLDLLPVAHL-HLSCILLDLVSY  181 (562)
T ss_dssp             CEECSC--CCTTCSEEECCS-SCCSBCC--CCGGGGGC-TTCCEEEEECSBCCTTTTGGGTTS-CEEEEEEEESSC
T ss_pred             CccCcc--ccccCCEEECCC-CCccccC--chHhhccc-CcccEEecCCCccccCchhhhhhc-eeeEEEeecccc
Confidence            467765  899999999999 5553300  23 67777 899999999888764333222222 226666655543

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=99.74  E-value=3.3e-17  Score=140.89  Aligned_cols=196  Identities=16%  Similarity=0.124  Sum_probs=128.6

Q ss_pred             CCCccccchHHHhhccccEEEecCCCCCCCCCcccCCCCCCcEecccCCCCCchhhcCCCCCccEEEeeccCCc------
Q 036414            3 SSYIDHSSEDIWMMQKLMHLNFGSITLPAPPKNYSSSLKNLIFISALHPSSCTPDILSRLPTVQTLRISGDLSH------   76 (252)
Q Consensus         3 ~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~~l~~~~~~~~~l~~l~~L~~L~l~~~~~~------   76 (252)
                      ++.++.+|  ++.+++|++|++++|.+.. ++  +..+++|++|+ ++.+...--.++.+++|++|++++|.-.      
T Consensus        73 ~n~l~~~~--~~~l~~L~~L~Ls~N~l~~-~~--~~~l~~L~~L~-L~~N~l~~l~~~~l~~L~~L~l~~N~l~~l~l~~  146 (457)
T 3bz5_A           73 SNNITTLD--LSQNTNLTYLACDSNKLTN-LD--VTPLTKLTYLN-CDTNKLTKLDVSQNPLLTYLNCARNTLTEIDVSH  146 (457)
T ss_dssp             SSCCSCCC--CTTCTTCSEEECCSSCCSC-CC--CTTCTTCCEEE-CCSSCCSCCCCTTCTTCCEEECTTSCCSCCCCTT
T ss_pred             CCcCCeEc--cccCCCCCEEECcCCCCce-ee--cCCCCcCCEEE-CCCCcCCeecCCCCCcCCEEECCCCccceecccc
Confidence            34555554  5666666666666555443 22  55666666666 5555541112555555555555555300      


Q ss_pred             -------------cccchhHhhhccCCCCeEEeeeccchhHHHHhhccccCCCCCCceEEeeecccCCCCchhhhcCCCC
Q 036414           77 -------------YHSGVSKSLCELHKLECLKLANQGKMWQITRMILSEYKFPPSLTQLSLSNTELIEDPMPTLEKLPHL  143 (252)
Q Consensus        77 -------------~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~l~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~~~~L  143 (252)
                                   ....+  .+..+++|+.|++++ +.+..    +| +..+ ++|+.|++++|.++..   .++.+++|
T Consensus       147 l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ls~-n~l~~----l~-l~~l-~~L~~L~l~~N~l~~~---~l~~l~~L  214 (457)
T 3bz5_A          147 NTQLTELDCHLNKKITKL--DVTPQTQLTTLDCSF-NKITE----LD-VSQN-KLLNRLNCDTNNITKL---DLNQNIQL  214 (457)
T ss_dssp             CTTCCEEECTTCSCCCCC--CCTTCTTCCEEECCS-SCCCC----CC-CTTC-TTCCEEECCSSCCSCC---CCTTCTTC
T ss_pred             CCcCCEEECCCCCccccc--ccccCCcCCEEECCC-Cccce----ec-cccC-CCCCEEECcCCcCCee---ccccCCCC
Confidence                         11111  244556666666666 44433    44 6677 9999999999999854   37789999


Q ss_pred             ceEEeccCCccCceeeecCCCCCccccEEEecCCccccceecccccccc----------ccceeeccCCCCCCChHHHHh
Q 036414          144 EVLKLKQNSYFERKLACVGCSSFPQLKILHLKSMLWLEEWTMGAGAMPK----------LESLILNPCAYLRKLPEELWR  213 (252)
Q Consensus       144 ~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~l~~----------L~~L~l~~~~~~~~~p~~l~~  213 (252)
                      +.|++++|.+.+.    . .+.+++|+.|++++|+ +++++  .+.+++          |+.|++++|...+.+|  ...
T Consensus       215 ~~L~Ls~N~l~~i----p-~~~l~~L~~L~l~~N~-l~~~~--~~~l~~L~~L~l~~n~L~~L~l~~n~~~~~~~--~~~  284 (457)
T 3bz5_A          215 TFLDCSSNKLTEI----D-VTPLTQLTYFDCSVNP-LTELD--VSTLSKLTTLHCIQTDLLEIDLTHNTQLIYFQ--AEG  284 (457)
T ss_dssp             SEEECCSSCCSCC----C-CTTCTTCSEEECCSSC-CSCCC--CTTCTTCCEEECTTCCCSCCCCTTCTTCCEEE--CTT
T ss_pred             CEEECcCCccccc----C-ccccCCCCEEEeeCCc-CCCcC--HHHCCCCCEEeccCCCCCEEECCCCccCCccc--ccc
Confidence            9999999998772    2 5688999999999999 88765  334444          4566666666665566  357


Q ss_pred             ccccceeecccCC
Q 036414          214 IKSLCKLELHWPQ  226 (252)
Q Consensus       214 l~~L~~L~l~~~~  226 (252)
                      +++|+.|+++++.
T Consensus       285 l~~L~~L~Ls~n~  297 (457)
T 3bz5_A          285 CRKIKELDVTHNT  297 (457)
T ss_dssp             CTTCCCCCCTTCT
T ss_pred             cccCCEEECCCCc
Confidence            8999999999885

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=99.74  E-value=4e-18  Score=134.24  Aligned_cols=184  Identities=14%  Similarity=0.108  Sum_probs=144.3

Q ss_pred             CCCccccch-HHHhhccccEEEecCCC-CCCCCCcccCCCCCCcEecccCC-CCC--c-hhhcCCCCCccEEEeeccCCc
Q 036414            3 SSYIDHSSE-DIWMMQKLMHLNFGSIT-LPAPPKNYSSSLKNLIFISALHP-SSC--T-PDILSRLPTVQTLRISGDLSH   76 (252)
Q Consensus         3 ~~~l~~lp~-~i~~l~~L~~L~l~~~~-~~~~~~~~l~~l~~L~~L~~l~~-~~~--~-~~~l~~l~~L~~L~l~~~~~~   76 (252)
                      ++.++.+|. .+..+++|++|++++|. +....+..+.++++|++|+ ++. +..  + +..+..+++|++|++++|.  
T Consensus        40 ~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~-l~~~n~l~~i~~~~f~~l~~L~~L~l~~n~--  116 (239)
T 2xwt_C           40 ETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIE-IRNTRNLTYIDPDALKELPLLKFLGIFNTG--  116 (239)
T ss_dssp             SCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEE-EEEETTCCEECTTSEECCTTCCEEEEEEEC--
T ss_pred             CCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEE-CCCCCCeeEcCHHHhCCCCCCCEEeCCCCC--
Confidence            578888887 68899999999999886 5444445789999999999 887 666  3 3457889999999999995  


Q ss_pred             cccchhHhhhccCCCC---eEEeeeccchhHHHHhhc--cccCCCCCCc-eEEeeecccCCCCchhhhcCCCCceEEecc
Q 036414           77 YHSGVSKSLCELHKLE---CLKLANQGKMWQITRMIL--SEYKFPPSLT-QLSLSNTELIEDPMPTLEKLPHLEVLKLKQ  150 (252)
Q Consensus        77 ~~~~~~~~l~~l~~L~---~L~l~~~~~~~~~~~l~~--~~~~~~~~L~-~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~  150 (252)
                       ...+|. +..+++|+   +|++.++..+..    ++  .+..+ ++|+ ++++++|.++......+.. ++|+.|++++
T Consensus       117 -l~~lp~-~~~l~~L~~L~~L~l~~N~~l~~----i~~~~~~~l-~~L~~~L~l~~n~l~~i~~~~~~~-~~L~~L~L~~  188 (239)
T 2xwt_C          117 -LKMFPD-LTKVYSTDIFFILEITDNPYMTS----IPVNAFQGL-CNETLTLKLYNNGFTSVQGYAFNG-TKLDAVYLNK  188 (239)
T ss_dssp             -CCSCCC-CTTCCBCCSEEEEEEESCTTCCE----ECTTTTTTT-BSSEEEEECCSCCCCEECTTTTTT-CEEEEEECTT
T ss_pred             -Cccccc-cccccccccccEEECCCCcchhh----cCcccccch-hcceeEEEcCCCCCcccCHhhcCC-CCCCEEEcCC
Confidence             344665 77788888   999999436655    55  47777 9999 9999999988444444544 8999999999


Q ss_pred             CC-ccCceeeecCCCCC-ccccEEEecCCccccceeccccccccccceeeccCC
Q 036414          151 NS-YFERKLACVGCSSF-PQLKILHLKSMLWLEEWTMGAGAMPKLESLILNPCA  202 (252)
Q Consensus       151 ~~-~~~~~~~~~~~~~~-~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~~~  202 (252)
                      |. +... .... +.++ ++|+.|++++|+ ++.++..  .+++|+.|+++++.
T Consensus       189 n~~l~~i-~~~~-~~~l~~~L~~L~l~~N~-l~~l~~~--~~~~L~~L~l~~~~  237 (239)
T 2xwt_C          189 NKYLTVI-DKDA-FGGVYSGPSLLDVSQTS-VTALPSK--GLEHLKELIARNTW  237 (239)
T ss_dssp             CTTCCEE-CTTT-TTTCSBCCSEEECTTCC-CCCCCCT--TCTTCSEEECTTC-
T ss_pred             CCCcccC-CHHH-hhccccCCcEEECCCCc-cccCChh--HhccCceeeccCcc
Confidence            85 6532 2223 5678 999999999999 8888764  78999999998875

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.73  E-value=1.3e-18  Score=150.87  Aligned_cols=207  Identities=14%  Similarity=0.057  Sum_probs=158.0

Q ss_pred             CCCCCccccc-hHHHhhccccEEEecCCCCCCCCCcccCCCCCCcEecccCCCCC--chh-----------------hcC
Q 036414            1 MPSSYIDHSS-EDIWMMQKLMHLNFGSITLPAPPKNYSSSLKNLIFISALHPSSC--TPD-----------------ILS   60 (252)
Q Consensus         1 ~~~~~l~~lp-~~i~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~~l~~~~~--~~~-----------------~l~   60 (252)
                      +.++.++.++ ..+..+++|++|++++|.+....|  +..+++|++|+ ++.|.+  ++.                 ...
T Consensus        41 Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~-Ls~N~l~~l~~~~~L~~L~L~~N~l~~~~~~  117 (487)
T 3oja_A           41 LSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLD-LNNNYVQELLVGPSIETLHAANNNISRVSCS  117 (487)
T ss_dssp             CCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE--CTTCTTCCEEE-CCSSEEEEEEECTTCCEEECCSSCCCCEEEC
T ss_pred             eeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc--cccCCCCCEEE-ecCCcCCCCCCCCCcCEEECcCCcCCCCCcc
Confidence            3567888885 579999999999999887654443  78888999888 777654  111                 112


Q ss_pred             CCCCccEEEeeccCCccccchhHhhhccCCCCeEEeeeccchhHHHHhhc-ccc-CCCCCCceEEeeecccCCCCchhhh
Q 036414           61 RLPTVQTLRISGDLSHYHSGVSKSLCELHKLECLKLANQGKMWQITRMIL-SEY-KFPPSLTQLSLSNTELIEDPMPTLE  138 (252)
Q Consensus        61 ~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~l~~-~~~-~~~~~L~~l~l~~~~~~~~~~~~l~  138 (252)
                      .+++|+.|++++|.  .....+..+..+++|+.|++++ +.+...   .| .+. .+ ++|++|++++|.++..  ....
T Consensus       118 ~l~~L~~L~L~~N~--l~~~~~~~~~~l~~L~~L~Ls~-N~l~~~---~~~~l~~~l-~~L~~L~Ls~N~l~~~--~~~~  188 (487)
T 3oja_A          118 RGQGKKNIYLANNK--ITMLRDLDEGCRSRVQYLDLKL-NEIDTV---NFAELAASS-DTLEHLNLQYNFIYDV--KGQV  188 (487)
T ss_dssp             CCSSCEEEECCSSC--CCSGGGBCGGGGSSEEEEECTT-SCCCEE---EGGGGGGGT-TTCCEEECTTSCCCEE--ECCC
T ss_pred             ccCCCCEEECCCCC--CCCCCchhhcCCCCCCEEECCC-CCCCCc---ChHHHhhhC-CcccEEecCCCccccc--cccc
Confidence            35778888888886  5555566788899999999999 555320   33 454 67 9999999999998744  2234


Q ss_pred             cCCCCceEEeccCCccCceeeecCCCCCccccEEEecCCccccceeccccccccccceeeccCCCC-CCChHHHHhcccc
Q 036414          139 KLPHLEVLKLKQNSYFERKLACVGCSSFPQLKILHLKSMLWLEEWTMGAGAMPKLESLILNPCAYL-RKLPEELWRIKSL  217 (252)
Q Consensus       139 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~~~~~-~~~p~~l~~l~~L  217 (252)
                      .+++|+.|++++|.+.+...  . +..+++|+.|++++|. ++.+|..++.+++|+.|++++|+.. ..+|..+..++.|
T Consensus       189 ~l~~L~~L~Ls~N~l~~~~~--~-~~~l~~L~~L~Ls~N~-l~~lp~~l~~l~~L~~L~l~~N~l~c~~~~~~~~~l~~L  264 (487)
T 3oja_A          189 VFAKLKTLDLSSNKLAFMGP--E-FQSAAGVTWISLRNNK-LVLIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRV  264 (487)
T ss_dssp             CCTTCCEEECCSSCCCEECG--G-GGGGTTCSEEECTTSC-CCEECTTCCCCTTCCEEECTTCCBCHHHHHHHHTTCHHH
T ss_pred             cCCCCCEEECCCCCCCCCCH--h-HcCCCCccEEEecCCc-CcccchhhccCCCCCEEEcCCCCCcCcchHHHHHhCCCC
Confidence            58999999999999876333  3 5688999999999999 8999888889999999999999876 3556667777777


Q ss_pred             ceeecc
Q 036414          218 CKLELH  223 (252)
Q Consensus       218 ~~L~l~  223 (252)
                      +.+++.
T Consensus       265 ~~l~~~  270 (487)
T 3oja_A          265 QTVAKQ  270 (487)
T ss_dssp             HHHHHH
T ss_pred             cEEecc
Confidence            777663

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=99.73  E-value=2.8e-17  Score=130.40  Aligned_cols=175  Identities=15%  Similarity=0.166  Sum_probs=123.2

Q ss_pred             ccccEEEecCCCCCCCCCcccCCCCCCcEecccCCCCC---chhhcCCCCCccEEEeeccCCccccchhHhhhccCCCCe
Q 036414           17 QKLMHLNFGSITLPAPPKNYSSSLKNLIFISALHPSSC---TPDILSRLPTVQTLRISGDLSHYHSGVSKSLCELHKLEC   93 (252)
Q Consensus        17 ~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~~l~~~~~---~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~   93 (252)
                      ...++++++++.+ ..+|..+.  ++++.|+ ++.+..   .+..++.+++|++|++++|.  .....+..+..+++|++
T Consensus        14 ~~~~~l~~~~~~l-~~~p~~~~--~~l~~L~-L~~n~l~~~~~~~~~~l~~L~~L~L~~n~--l~~~~~~~~~~l~~L~~   87 (251)
T 3m19_A           14 EGKKEVDCQGKSL-DSVPSGIP--ADTEKLD-LQSTGLATLSDATFRGLTKLTWLNLDYNQ--LQTLSAGVFDDLTELGT   87 (251)
T ss_dssp             GGGTEEECTTCCC-SSCCSCCC--TTCCEEE-CTTSCCCCCCTTTTTTCTTCCEEECTTSC--CCCCCTTTTTTCTTCCE
T ss_pred             CCCeEEecCCCCc-cccCCCCC--CCCCEEE-ccCCCcCccCHhHhcCcccCCEEECCCCc--CCccCHhHhccCCcCCE
Confidence            3567788875444 35665444  5788888 777765   44457778888888888885  44444555777888888


Q ss_pred             EEeeeccchhHHHHhhc--cccCCCCCCceEEeeecccCCCCchhhhcCCCCceEEeccCCccCceeeecCCCCCccccE
Q 036414           94 LKLANQGKMWQITRMIL--SEYKFPPSLTQLSLSNTELIEDPMPTLEKLPHLEVLKLKQNSYFERKLACVGCSSFPQLKI  171 (252)
Q Consensus        94 L~l~~~~~~~~~~~l~~--~~~~~~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~  171 (252)
                      |++++ +.+..    ++  .+..+ ++|++|++++|.++...+..++.+++|++|++++|.+..... .. +..+++|++
T Consensus        88 L~L~~-n~l~~----~~~~~~~~l-~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~-~~-~~~l~~L~~  159 (251)
T 3m19_A           88 LGLAN-NQLAS----LPLGVFDHL-TQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPA-GA-FDKLTNLQT  159 (251)
T ss_dssp             EECTT-SCCCC----CCTTTTTTC-TTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCT-TT-TTTCTTCCE
T ss_pred             EECCC-Ccccc----cChhHhccc-CCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccCH-HH-cCcCcCCCE
Confidence            88887 55544    44  45666 888888888888886666667788888888888887765322 12 567788888


Q ss_pred             EEecCCccccceec-cccccccccceeeccCCCCCC
Q 036414          172 LHLKSMLWLEEWTM-GAGAMPKLESLILNPCAYLRK  206 (252)
Q Consensus       172 L~l~~~~~l~~~~~-~~~~l~~L~~L~l~~~~~~~~  206 (252)
                      |++++|+ ++.++. .+..+++|+.|++++|+....
T Consensus       160 L~L~~N~-l~~~~~~~~~~l~~L~~L~l~~N~~~c~  194 (251)
T 3m19_A          160 LSLSTNQ-LQSVPHGAFDRLGKLQTITLFGNQFDCS  194 (251)
T ss_dssp             EECCSSC-CSCCCTTTTTTCTTCCEEECCSCCBCTT
T ss_pred             EECCCCc-CCccCHHHHhCCCCCCEEEeeCCceeCC
Confidence            8888888 776654 467788888888888876543

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=99.72  E-value=1.2e-16  Score=126.63  Aligned_cols=165  Identities=18%  Similarity=0.224  Sum_probs=129.4

Q ss_pred             CCCccccchHHHhhccccEEEecCCCCCCCCCcccCCCCCCcEecccCCCCC---chhhcCCCCCccEEEeeccCCcccc
Q 036414            3 SSYIDHSSEDIWMMQKLMHLNFGSITLPAPPKNYSSSLKNLIFISALHPSSC---TPDILSRLPTVQTLRISGDLSHYHS   79 (252)
Q Consensus         3 ~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~~l~~~~~---~~~~l~~l~~L~~L~l~~~~~~~~~   79 (252)
                      ++.++.+|..+.  +++++|++++|.+....+..+.++++|++|+ ++.+.+   .+..+..+++|++|++++|.  ...
T Consensus        23 ~~~l~~~p~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~-L~~n~l~~~~~~~~~~l~~L~~L~L~~n~--l~~   97 (251)
T 3m19_A           23 GKSLDSVPSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLN-LDYNQLQTLSAGVFDDLTELGTLGLANNQ--LAS   97 (251)
T ss_dssp             TCCCSSCCSCCC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEE-CTTSCCCCCCTTTTTTCTTCCEEECTTSC--CCC
T ss_pred             CCCccccCCCCC--CCCCEEEccCCCcCccCHhHhcCcccCCEEE-CCCCcCCccCHhHhccCCcCCEEECCCCc--ccc
Confidence            467788887665  5889999998888777777788999999999 888876   34447889999999999986  444


Q ss_pred             chhHhhhccCCCCeEEeeeccchhHHHHhhc--cccCCCCCCceEEeeecccCCCCchhhhcCCCCceEEeccCCccCce
Q 036414           80 GVSKSLCELHKLECLKLANQGKMWQITRMIL--SEYKFPPSLTQLSLSNTELIEDPMPTLEKLPHLEVLKLKQNSYFERK  157 (252)
Q Consensus        80 ~~~~~l~~l~~L~~L~l~~~~~~~~~~~l~~--~~~~~~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~  157 (252)
                      ..+..+..+++|++|++++ +.+..    ++  .+..+ ++|++|++++|.+....+..++.+++|++|++++|.+....
T Consensus        98 ~~~~~~~~l~~L~~L~L~~-N~l~~----~~~~~~~~l-~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~  171 (251)
T 3m19_A           98 LPLGVFDHLTQLDKLYLGG-NQLKS----LPSGVFDRL-TKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVP  171 (251)
T ss_dssp             CCTTTTTTCTTCCEEECCS-SCCCC----CCTTTTTTC-TTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCC
T ss_pred             cChhHhcccCCCCEEEcCC-CcCCC----cChhHhccC-CcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCCccC
Confidence            4445677889999999988 56655    55  35677 89999999999998777777888999999999988876533


Q ss_pred             eeecCCCCCccccEEEecCCcccc
Q 036414          158 LACVGCSSFPQLKILHLKSMLWLE  181 (252)
Q Consensus       158 ~~~~~~~~~~~L~~L~l~~~~~l~  181 (252)
                      .. . +..+++|+.|++++|+ +.
T Consensus       172 ~~-~-~~~l~~L~~L~l~~N~-~~  192 (251)
T 3m19_A          172 HG-A-FDRLGKLQTITLFGNQ-FD  192 (251)
T ss_dssp             TT-T-TTTCTTCCEEECCSCC-BC
T ss_pred             HH-H-HhCCCCCCEEEeeCCc-ee
Confidence            22 3 5678899999999988 54

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=99.72  E-value=8.4e-17  Score=130.45  Aligned_cols=172  Identities=19%  Similarity=0.211  Sum_probs=138.0

Q ss_pred             HHhhccccEEEecCCCCCCCCCcccCCCCCCcEecccCCCCC-chhhcCCCCCccEEEeeccCCccccchhHhhhccCCC
Q 036414           13 IWMMQKLMHLNFGSITLPAPPKNYSSSLKNLIFISALHPSSC-TPDILSRLPTVQTLRISGDLSHYHSGVSKSLCELHKL   91 (252)
Q Consensus        13 i~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~~l~~~~~-~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L   91 (252)
                      ...+++|++|++++|.+. .++ .+..+++|++|+ ++.+.. ....+..+++|++|++++|.   ...++ .+..+++|
T Consensus        42 ~~~l~~L~~L~l~~~~i~-~~~-~~~~l~~L~~L~-L~~n~l~~~~~l~~l~~L~~L~l~~n~---l~~~~-~l~~l~~L  114 (291)
T 1h6t_A           42 QNELNSIDQIIANNSDIK-SVQ-GIQYLPNVTKLF-LNGNKLTDIKPLANLKNLGWLFLDENK---VKDLS-SLKDLKKL  114 (291)
T ss_dssp             HHHHHTCCEEECTTSCCC-CCT-TGGGCTTCCEEE-CCSSCCCCCGGGTTCTTCCEEECCSSC---CCCGG-GGTTCTTC
T ss_pred             hhhcCcccEEEccCCCcc-cCh-hHhcCCCCCEEE-ccCCccCCCcccccCCCCCEEECCCCc---CCCCh-hhccCCCC
Confidence            467889999999976654 343 478899999999 888877 22238899999999999995   33444 48889999


Q ss_pred             CeEEeeeccchhHHHHhhccccCCCCCCceEEeeecccCCCCchhhhcCCCCceEEeccCCccCceeeecCCCCCccccE
Q 036414           92 ECLKLANQGKMWQITRMILSEYKFPPSLTQLSLSNTELIEDPMPTLEKLPHLEVLKLKQNSYFERKLACVGCSSFPQLKI  171 (252)
Q Consensus        92 ~~L~l~~~~~~~~~~~l~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~  171 (252)
                      ++|++++ +.+..    ++.+..+ ++|++|++++|.++..  ..++.+++|++|++++|.+.....    ...+++|+.
T Consensus       115 ~~L~L~~-n~i~~----~~~l~~l-~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~N~l~~~~~----l~~l~~L~~  182 (291)
T 1h6t_A          115 KSLSLEH-NGISD----INGLVHL-PQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP----LAGLTKLQN  182 (291)
T ss_dssp             CEEECTT-SCCCC----CGGGGGC-TTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG----GTTCTTCCE
T ss_pred             CEEECCC-CcCCC----ChhhcCC-CCCCEEEccCCcCCcc--hhhccCCCCCEEEccCCccccchh----hcCCCccCE
Confidence            9999998 56655    5677777 9999999999998854  678889999999999988766332    457899999


Q ss_pred             EEecCCccccceeccccccccccceeeccCCCCC
Q 036414          172 LHLKSMLWLEEWTMGAGAMPKLESLILNPCAYLR  205 (252)
Q Consensus       172 L~l~~~~~l~~~~~~~~~l~~L~~L~l~~~~~~~  205 (252)
                      |++++|. +++++. +..+++|+.|++++|....
T Consensus       183 L~L~~N~-i~~l~~-l~~l~~L~~L~l~~n~i~~  214 (291)
T 1h6t_A          183 LYLSKNH-ISDLRA-LAGLKNLDVLELFSQECLN  214 (291)
T ss_dssp             EECCSSC-CCBCGG-GTTCTTCSEEEEEEEEEEC
T ss_pred             EECCCCc-CCCChh-hccCCCCCEEECcCCcccC
Confidence            9999998 888765 7889999999999987643

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=99.71  E-value=1.4e-16  Score=141.75  Aligned_cols=84  Identities=19%  Similarity=0.178  Sum_probs=46.6

Q ss_pred             CCCCceEEeccCCccCceeeecCCCCCccccEEEecCCcccccee-ccccccccccceeeccCCCCCCChHHHHhc-ccc
Q 036414          140 LPHLEVLKLKQNSYFERKLACVGCSSFPQLKILHLKSMLWLEEWT-MGAGAMPKLESLILNPCAYLRKLPEELWRI-KSL  217 (252)
Q Consensus       140 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~-~~~~~l~~L~~L~l~~~~~~~~~p~~l~~l-~~L  217 (252)
                      +++|+.|++++|.+.+.. +.. +.++++|++|++++|+ ++.++ ..++.+++|+.|++++|......|..+..+ ++|
T Consensus       493 l~~L~~L~Ls~N~L~~l~-~~~-f~~l~~L~~L~Ls~N~-l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~~L  569 (635)
T 4g8a_A          493 LRNLTFLDLSQCQLEQLS-PTA-FNSLSSLQVLNMSHNN-FFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSL  569 (635)
T ss_dssp             CTTCCEEECTTSCCCEEC-TTT-TTTCTTCCEEECTTSC-CCBCCCGGGTTCTTCCEEECTTSCCCBCCSSCTTCCCTTC
T ss_pred             ccccCEEECCCCccCCcC-hHH-HcCCCCCCEEECCCCc-CCCCChhHHhCCCCCCEEECCCCcCCCCCHHHHHhhhCcC
Confidence            344444444444443321 112 4456666666666665 55553 334566677777777776654445555555 467


Q ss_pred             ceeecccCC
Q 036414          218 CKLELHWPQ  226 (252)
Q Consensus       218 ~~L~l~~~~  226 (252)
                      ++|+++++|
T Consensus       570 ~~L~L~~Np  578 (635)
T 4g8a_A          570 AFLNLTQND  578 (635)
T ss_dssp             CEEECTTCC
T ss_pred             CEEEeeCCC
Confidence            778776543

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=99.70  E-value=3.7e-18  Score=143.73  Aligned_cols=208  Identities=19%  Similarity=0.181  Sum_probs=122.2

Q ss_pred             hHHHhhccccEEEecCCCC---CCCCCccc-------CCCCCCcEecccCCCCC-------chhhcCCCCCccEEEeecc
Q 036414           11 EDIWMMQKLMHLNFGSITL---PAPPKNYS-------SSLKNLIFISALHPSSC-------TPDILSRLPTVQTLRISGD   73 (252)
Q Consensus        11 ~~i~~l~~L~~L~l~~~~~---~~~~~~~l-------~~l~~L~~L~~l~~~~~-------~~~~l~~l~~L~~L~l~~~   73 (252)
                      ..+..+++|++|++++|..   ...+|..+       ..+++|++|+ ++.+.+       ++..+..+++|++|++++|
T Consensus        54 ~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~-Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n  132 (386)
T 2ca6_A           54 ENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVR-LSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNN  132 (386)
T ss_dssp             HTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEE-CCSCCCCTTTHHHHHHHHHHCTTCCEEECCSS
T ss_pred             HHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEE-CCCCcCCHHHHHHHHHHHHhCCCCCEEECcCC
Confidence            3355677788888876432   22334443       5777788887 777665       2344666778888888777


Q ss_pred             CCcccc----chhHhhhcc---------CCCCeEEeeeccch--hHHHHhhc-cccCCCCCCceEEeeecccCCC-----
Q 036414           74 LSHYHS----GVSKSLCEL---------HKLECLKLANQGKM--WQITRMIL-SEYKFPPSLTQLSLSNTELIED-----  132 (252)
Q Consensus        74 ~~~~~~----~~~~~l~~l---------~~L~~L~l~~~~~~--~~~~~l~~-~~~~~~~~L~~l~l~~~~~~~~-----  132 (252)
                      .  ...    .++..+..+         ++|++|++++ +.+  ..+.. +. .+..+ ++|++|++++|.++..     
T Consensus       133 ~--l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~-n~l~~~~~~~-l~~~l~~~-~~L~~L~L~~n~l~~~g~~~l  207 (386)
T 2ca6_A          133 G--LGPQAGAKIARALQELAVNKKAKNAPPLRSIICGR-NRLENGSMKE-WAKTFQSH-RLLHTVKMVQNGIRPEGIEHL  207 (386)
T ss_dssp             C--CHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCS-SCCTGGGHHH-HHHHHHHC-TTCCEEECCSSCCCHHHHHHH
T ss_pred             C--CCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCC-CCCCcHHHHH-HHHHHHhC-CCcCEEECcCCCCCHhHHHHH
Confidence            5  322    233334444         7778887777 333  12000 11 34455 6777777777766522     


Q ss_pred             CchhhhcCCCCceEEeccCCccC---ceeeecCCCCCccccEEEecCCccccce-----eccc--cccccccceeeccCC
Q 036414          133 PMPTLEKLPHLEVLKLKQNSYFE---RKLACVGCSSFPQLKILHLKSMLWLEEW-----TMGA--GAMPKLESLILNPCA  202 (252)
Q Consensus       133 ~~~~l~~~~~L~~L~l~~~~~~~---~~~~~~~~~~~~~L~~L~l~~~~~l~~~-----~~~~--~~l~~L~~L~l~~~~  202 (252)
                      .+..+..+++|+.|++++|.+..   ..++.. +..+++|++|++++|. ++..     +..+  +.+++|+.|++++|.
T Consensus       208 ~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~-l~~~~~L~~L~L~~n~-i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~  285 (386)
T 2ca6_A          208 LLEGLAYCQELKVLDLQDNTFTHLGSSALAIA-LKSWPNLRELGLNDCL-LSARGAAAVVDAFSKLENIGLQTLRLQYNE  285 (386)
T ss_dssp             HHTTGGGCTTCCEEECCSSCCHHHHHHHHHHH-GGGCTTCCEEECTTCC-CCHHHHHHHHHHHHTCSSCCCCEEECCSSC
T ss_pred             HHHHhhcCCCccEEECcCCCCCcHHHHHHHHH-HccCCCcCEEECCCCC-CchhhHHHHHHHHhhccCCCeEEEECcCCc
Confidence            12255667777777777776642   112222 4566777777777777 5532     2222  336777777777776


Q ss_pred             CCC----CChHHH-HhccccceeecccCC
Q 036414          203 YLR----KLPEEL-WRIKSLCKLELHWPQ  226 (252)
Q Consensus       203 ~~~----~~p~~l-~~l~~L~~L~l~~~~  226 (252)
                      ...    .+|..+ .++++|++|++++++
T Consensus       286 i~~~g~~~l~~~l~~~l~~L~~L~l~~N~  314 (386)
T 2ca6_A          286 IELDAVRTLKTVIDEKMPDLLFLELNGNR  314 (386)
T ss_dssp             CBHHHHHHHHHHHHHHCTTCCEEECTTSB
T ss_pred             CCHHHHHHHHHHHHhcCCCceEEEccCCc
Confidence            654    366655 456777777777653

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=99.69  E-value=2.8e-17  Score=134.38  Aligned_cols=189  Identities=16%  Similarity=0.145  Sum_probs=143.5

Q ss_pred             CCcc-ccchHH--HhhccccEEEecCCCCCCCCC----cccCCCCCCcEecccCCCCC---chhhcCCCCCccEEEeecc
Q 036414            4 SYID-HSSEDI--WMMQKLMHLNFGSITLPAPPK----NYSSSLKNLIFISALHPSSC---TPDILSRLPTVQTLRISGD   73 (252)
Q Consensus         4 ~~l~-~lp~~i--~~l~~L~~L~l~~~~~~~~~~----~~l~~l~~L~~L~~l~~~~~---~~~~l~~l~~L~~L~l~~~   73 (252)
                      +.+. ..|..+  ..+++|++|++++|.+....+    ..+..+++|++|+ ++.+..   .+..++.+++|++|++++|
T Consensus       101 n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~-Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N  179 (310)
T 4glp_A          101 LKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLS-IAQAHSPAFSCEQVRAFPALTSLDLSDN  179 (310)
T ss_dssp             CCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEE-EECCSSCCCCTTSCCCCTTCCEEECCSC
T ss_pred             CEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEE-eeCCCcchhhHHHhccCCCCCEEECCCC
Confidence            4444 446666  889999999999888776444    3345789999999 888877   4556889999999999999


Q ss_pred             CCcccc--chhHh--hhccCCCCeEEeeeccchhHHHHhhc-c-ccCCCCCCceEEeeecccCCCCchhhhcC---CCCc
Q 036414           74 LSHYHS--GVSKS--LCELHKLECLKLANQGKMWQITRMIL-S-EYKFPPSLTQLSLSNTELIEDPMPTLEKL---PHLE  144 (252)
Q Consensus        74 ~~~~~~--~~~~~--l~~l~~L~~L~l~~~~~~~~~~~l~~-~-~~~~~~~L~~l~l~~~~~~~~~~~~l~~~---~~L~  144 (252)
                      .  ...  .++..  +..+++|++|++++ +.+..+.. .+ . +..+ ++|++|++++|.+....|..++.+   ++|+
T Consensus       180 ~--l~~~~~~~~~~~~~~l~~L~~L~Ls~-N~l~~l~~-~~~~l~~~l-~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~  254 (310)
T 4glp_A          180 P--GLGERGLMAALCPHKFPAIQNLALRN-TGMETPTG-VCAALAAAG-VQPHSLDLSHNSLRATVNPSAPRCMWSSALN  254 (310)
T ss_dssp             T--TCHHHHHHTTSCTTSSCCCCSCBCCS-SCCCCHHH-HHHHHHHHT-CCCSSEECTTSCCCCCCCSCCSSCCCCTTCC
T ss_pred             C--CccchhhhHHHhhhcCCCCCEEECCC-CCCCchHH-HHHHHHhcC-CCCCEEECCCCCCCccchhhHHhccCcCcCC
Confidence            5  222  13322  36789999999999 55522000 22 2 3567 999999999999997767666665   7999


Q ss_pred             eEEeccCCccCceeeecCCCCCccccEEEecCCccccceeccccccccccceeeccCCCCC
Q 036414          145 VLKLKQNSYFERKLACVGCSSFPQLKILHLKSMLWLEEWTMGAGAMPKLESLILNPCAYLR  205 (252)
Q Consensus       145 ~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~~~~~~  205 (252)
                      +|++++|.+..  ++.. .  +++|++|++++|+ +++++. ...+++|+.|++++|+..+
T Consensus       255 ~L~Ls~N~l~~--lp~~-~--~~~L~~L~Ls~N~-l~~~~~-~~~l~~L~~L~L~~N~l~~  308 (310)
T 4glp_A          255 SLNLSFAGLEQ--VPKG-L--PAKLRVLDLSSNR-LNRAPQ-PDELPEVDNLTLDGNPFLV  308 (310)
T ss_dssp             CEECCSSCCCS--CCSC-C--CSCCSCEECCSCC-CCSCCC-TTSCCCCSCEECSSTTTSC
T ss_pred             EEECCCCCCCc--hhhh-h--cCCCCEEECCCCc-CCCCch-hhhCCCccEEECcCCCCCC
Confidence            99999999874  2322 2  4899999999999 888866 6789999999999998754

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=99.69  E-value=7.6e-17  Score=134.03  Aligned_cols=209  Identities=19%  Similarity=0.191  Sum_probs=118.4

Q ss_pred             CCccccchHHHhhccccEEEecCCCCCCCCCcccCCCCCCcEecccCCCCC---chh-hcCCCCCccEEE-eeccCCccc
Q 036414            4 SYIDHSSEDIWMMQKLMHLNFGSITLPAPPKNYSSSLKNLIFISALHPSSC---TPD-ILSRLPTVQTLR-ISGDLSHYH   78 (252)
Q Consensus         4 ~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~~l~~~~~---~~~-~l~~l~~L~~L~-l~~~~~~~~   78 (252)
                      ++++++|..+  .+++++|++++|.+....+..+.++++|++|+ ++.|..   ++. .+.++++++++. +..+.  ..
T Consensus        19 ~~Lt~iP~~l--~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~-Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~--l~   93 (350)
T 4ay9_X           19 SKVTEIPSDL--PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIE-ISQNDVLEVIEADVFSNLPKLHEIRIEKANN--LL   93 (350)
T ss_dssp             TTCCSCCTTC--CTTCSEEEEESCCCSEECTTSSTTCTTCCEEE-EECCTTCCEECTTSBCSCTTCCEEEEEEETT--CC
T ss_pred             CCCCccCcCc--CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEE-CcCCCCCCccChhHhhcchhhhhhhcccCCc--cc
Confidence            4566676655  24677777776555433334567777777777 666654   222 245566665543 33342  22


Q ss_pred             cchhHhhhccCCCCeEEeeeccchhHH-------------------HHh--hc--cccCCCCCCceEEeeecccCCCCch
Q 036414           79 SGVSKSLCELHKLECLKLANQGKMWQI-------------------TRM--IL--SEYKFPPSLTQLSLSNTELIEDPMP  135 (252)
Q Consensus        79 ~~~~~~l~~l~~L~~L~l~~~~~~~~~-------------------~~l--~~--~~~~~~~~L~~l~l~~~~~~~~~~~  135 (252)
                      ...+..+..+++|++|++.+ +.+..+                   .++  ++  .+..+...++.|++++|+++.. +.
T Consensus        94 ~l~~~~f~~l~~L~~L~l~~-n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~~i-~~  171 (350)
T 4ay9_X           94 YINPEAFQNLPNLQYLLISN-TGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEI-HN  171 (350)
T ss_dssp             EECTTSBCCCTTCCEEEEEE-ECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCCEE-CT
T ss_pred             ccCchhhhhccccccccccc-cccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhccccccccCC-Ch
Confidence            22244556667777777766 333210                   000  22  2222223566666666666532 22


Q ss_pred             hhhcCCCCceEEeccCCccCceeeecCCCCCccccEEEecCCccccceeccccccccccceeeccCCCCCCChHHHHhcc
Q 036414          136 TLEKLPHLEVLKLKQNSYFERKLACVGCSSFPQLKILHLKSMLWLEEWTMGAGAMPKLESLILNPCAYLRKLPEELWRIK  215 (252)
Q Consensus       136 ~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~~~~~~~~p~~l~~l~  215 (252)
                      ......+|+++.+.++.......... +.++++|++|++++|+ ++.+|..  .+.+|+.|.+.++...+.+|. +..++
T Consensus       172 ~~f~~~~L~~l~l~~~n~l~~i~~~~-f~~l~~L~~LdLs~N~-l~~lp~~--~~~~L~~L~~l~~~~l~~lP~-l~~l~  246 (350)
T 4ay9_X          172 SAFNGTQLDELNLSDNNNLEELPNDV-FHGASGPVILDISRTR-IHSLPSY--GLENLKKLRARSTYNLKKLPT-LEKLV  246 (350)
T ss_dssp             TSSTTEEEEEEECTTCTTCCCCCTTT-TTTEECCSEEECTTSC-CCCCCSS--SCTTCCEEECTTCTTCCCCCC-TTTCC
T ss_pred             hhccccchhHHhhccCCcccCCCHHH-hccCcccchhhcCCCC-cCccChh--hhccchHhhhccCCCcCcCCC-chhCc
Confidence            23334567777776433322222222 4677888888888887 7777652  366777777777777777774 66788


Q ss_pred             ccceeeccc
Q 036414          216 SLCKLELHW  224 (252)
Q Consensus       216 ~L~~L~l~~  224 (252)
                      +|+.+++..
T Consensus       247 ~L~~l~l~~  255 (350)
T 4ay9_X          247 ALMEASLTY  255 (350)
T ss_dssp             SCCEEECSC
T ss_pred             ChhhCcCCC
Confidence            888888753

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=99.68  E-value=1.7e-16  Score=128.58  Aligned_cols=169  Identities=25%  Similarity=0.295  Sum_probs=141.5

Q ss_pred             cCCCCCCcEecccCCCCC-chhhcCCCCCccEEEeeccCCccccchhHhhhccCCCCeEEeeeccchhHHHHhhccccCC
Q 036414           37 SSSLKNLIFISALHPSSC-TPDILSRLPTVQTLRISGDLSHYHSGVSKSLCELHKLECLKLANQGKMWQITRMILSEYKF  115 (252)
Q Consensus        37 l~~l~~L~~L~~l~~~~~-~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~l~~~~~~~  115 (252)
                      ...+++|+.|+ ++.+.. ..+.+..+++|++|++++|.   ...++. +..+++|++|++.+ +.+..    ++.+..+
T Consensus        42 ~~~l~~L~~L~-l~~~~i~~~~~~~~l~~L~~L~L~~n~---l~~~~~-l~~l~~L~~L~l~~-n~l~~----~~~l~~l  111 (291)
T 1h6t_A           42 QNELNSIDQII-ANNSDIKSVQGIQYLPNVTKLFLNGNK---LTDIKP-LANLKNLGWLFLDE-NKVKD----LSSLKDL  111 (291)
T ss_dssp             HHHHHTCCEEE-CTTSCCCCCTTGGGCTTCCEEECCSSC---CCCCGG-GTTCTTCCEEECCS-SCCCC----GGGGTTC
T ss_pred             hhhcCcccEEE-ccCCCcccChhHhcCCCCCEEEccCCc---cCCCcc-cccCCCCCEEECCC-CcCCC----ChhhccC
Confidence            46788999999 888876 44568889999999999995   344444 88999999999999 66666    6678888


Q ss_pred             CCCCceEEeeecccCCCCchhhhcCCCCceEEeccCCccCceeeecCCCCCccccEEEecCCccccceeccccccccccc
Q 036414          116 PPSLTQLSLSNTELIEDPMPTLEKLPHLEVLKLKQNSYFERKLACVGCSSFPQLKILHLKSMLWLEEWTMGAGAMPKLES  195 (252)
Q Consensus       116 ~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~l~~L~~  195 (252)
                       ++|++|++++|.+...  ..+..+++|+.|++++|.+...  . . ...+++|+.|++++|. +++++. ++.+++|+.
T Consensus       112 -~~L~~L~L~~n~i~~~--~~l~~l~~L~~L~l~~n~l~~~--~-~-l~~l~~L~~L~L~~N~-l~~~~~-l~~l~~L~~  182 (291)
T 1h6t_A          112 -KKLKSLSLEHNGISDI--NGLVHLPQLESLYLGNNKITDI--T-V-LSRLTKLDTLSLEDNQ-ISDIVP-LAGLTKLQN  182 (291)
T ss_dssp             -TTCCEEECTTSCCCCC--GGGGGCTTCCEEECCSSCCCCC--G-G-GGGCTTCSEEECCSSC-CCCCGG-GTTCTTCCE
T ss_pred             -CCCCEEECCCCcCCCC--hhhcCCCCCCEEEccCCcCCcc--h-h-hccCCCCCEEEccCCc-cccchh-hcCCCccCE
Confidence             9999999999999853  5688999999999999988764  2 3 6689999999999998 888766 888999999


Q ss_pred             eeeccCCCCCCChHHHHhccccceeecccCC
Q 036414          196 LILNPCAYLRKLPEELWRIKSLCKLELHWPQ  226 (252)
Q Consensus       196 L~l~~~~~~~~~p~~l~~l~~L~~L~l~~~~  226 (252)
                      |++++|... .++. +..+++|+.|++++++
T Consensus       183 L~L~~N~i~-~l~~-l~~l~~L~~L~l~~n~  211 (291)
T 1h6t_A          183 LYLSKNHIS-DLRA-LAGLKNLDVLELFSQE  211 (291)
T ss_dssp             EECCSSCCC-BCGG-GTTCTTCSEEEEEEEE
T ss_pred             EECCCCcCC-CChh-hccCCCCCEEECcCCc
Confidence            999999764 5664 7889999999998763

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=99.67  E-value=3.6e-17  Score=140.52  Aligned_cols=41  Identities=5%  Similarity=-0.088  Sum_probs=22.0

Q ss_pred             CCCccccchHHHhhccccEEEecCCCCCCCCCcccCCCCCC
Q 036414            3 SSYIDHSSEDIWMMQKLMHLNFGSITLPAPPKNYSSSLKNL   43 (252)
Q Consensus         3 ~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L   43 (252)
                      ++.++++|.+++++++|++|++++|.+...+|..++.+.+|
T Consensus        20 ~n~l~~iP~~i~~L~~L~~L~l~~n~~~~~~p~~~~~l~~L   60 (454)
T 1jl5_A           20 SSNLTEMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREM   60 (454)
T ss_dssp             --------------CCHHHHHHHHHHHHHTSCTTSCCCHHH
T ss_pred             cCchhhCChhHhcccchhhhhccCCcccccCCcccccchhc
Confidence            46778899999999999999999887777788888777654

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=99.67  E-value=2.5e-16  Score=139.56  Aligned_cols=172  Identities=19%  Similarity=0.211  Sum_probs=126.5

Q ss_pred             HHhhccccEEEecCCCCCCCCCcccCCCCCCcEecccCCCCC-chhhcCCCCCccEEEeeccCCccccchhHhhhccCCC
Q 036414           13 IWMMQKLMHLNFGSITLPAPPKNYSSSLKNLIFISALHPSSC-TPDILSRLPTVQTLRISGDLSHYHSGVSKSLCELHKL   91 (252)
Q Consensus        13 i~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~~l~~~~~-~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L   91 (252)
                      +..+.+|+.|++++|.+. .++ .+..+++|+.|+ ++.+.+ ....+..+++|+.|+|++|.   ...++ .+..+++|
T Consensus        39 ~~~L~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~-Ls~N~l~~~~~l~~l~~L~~L~Ls~N~---l~~l~-~l~~l~~L  111 (605)
T 1m9s_A           39 QNELNSIDQIIANNSDIK-SVQ-GIQYLPNVTKLF-LNGNKLTDIKPLTNLKNLGWLFLDENK---IKDLS-SLKDLKKL  111 (605)
T ss_dssp             HHHHTTCCCCBCTTCCCC-CCT-TGGGCTTCCEEE-CTTSCCCCCGGGGGCTTCCEEECCSSC---CCCCT-TSTTCTTC
T ss_pred             hhcCCCCCEEECcCCCCC-CCh-HHccCCCCCEEE-eeCCCCCCChhhccCCCCCEEECcCCC---CCCCh-hhccCCCC
Confidence            467888888888865543 333 478888888888 877776 22237788888888888884   33333 67788888


Q ss_pred             CeEEeeeccchhHHHHhhccccCCCCCCceEEeeecccCCCCchhhhcCCCCceEEeccCCccCceeeecCCCCCccccE
Q 036414           92 ECLKLANQGKMWQITRMILSEYKFPPSLTQLSLSNTELIEDPMPTLEKLPHLEVLKLKQNSYFERKLACVGCSSFPQLKI  171 (252)
Q Consensus        92 ~~L~l~~~~~~~~~~~l~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~  171 (252)
                      +.|++++ +.+..    ++.+..+ ++|+.|++++|.+...  ..++.+++|+.|++++|.+.....    +..+++|+.
T Consensus       112 ~~L~Ls~-N~l~~----l~~l~~l-~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~~~~----l~~l~~L~~  179 (605)
T 1m9s_A          112 KSLSLEH-NGISD----INGLVHL-PQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP----LAGLTKLQN  179 (605)
T ss_dssp             CEEECTT-SCCCC----CGGGGGC-TTCSEEECCSSCCCCC--GGGGSCTTCSEEECCSSCCCCCGG----GTTCTTCCE
T ss_pred             CEEEecC-CCCCC----CccccCC-CccCEEECCCCccCCc--hhhcccCCCCEEECcCCcCCCchh----hccCCCCCE
Confidence            8888887 55555    5567777 8888888888888743  567788888888888887765322    457888888


Q ss_pred             EEecCCccccceeccccccccccceeeccCCCCC
Q 036414          172 LHLKSMLWLEEWTMGAGAMPKLESLILNPCAYLR  205 (252)
Q Consensus       172 L~l~~~~~l~~~~~~~~~l~~L~~L~l~~~~~~~  205 (252)
                      |+|++|. +++++. +..+++|+.|++++|....
T Consensus       180 L~Ls~N~-i~~l~~-l~~l~~L~~L~L~~N~l~~  211 (605)
T 1m9s_A          180 LYLSKNH-ISDLRA-LAGLKNLDVLELFSQECLN  211 (605)
T ss_dssp             EECCSSC-CCBCGG-GTTCTTCSEEECCSEEEEC
T ss_pred             EECcCCC-CCCChH-HccCCCCCEEEccCCcCcC
Confidence            8888887 777753 6778888888888887543

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=99.66  E-value=9.2e-16  Score=117.18  Aligned_cols=149  Identities=18%  Similarity=0.280  Sum_probs=99.2

Q ss_pred             CCCCCCcEecccCCCCC-chhhcCCCCCccEEEeeccCCccccchhHhhhccCCCCeEEeeeccch-hHHHHhhc-cccC
Q 036414           38 SSLKNLIFISALHPSSC-TPDILSRLPTVQTLRISGDLSHYHSGVSKSLCELHKLECLKLANQGKM-WQITRMIL-SEYK  114 (252)
Q Consensus        38 ~~l~~L~~L~~l~~~~~-~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~-~~~~~l~~-~~~~  114 (252)
                      ..+++|++|+ ++.+.. ..+.+..+++|++|++++|.   ...+ ..+..+++|++|++.+ +.+ ..    .+ .+..
T Consensus        41 ~~l~~L~~L~-l~~n~i~~l~~l~~l~~L~~L~l~~n~---~~~~-~~l~~l~~L~~L~l~~-n~l~~~----~~~~l~~  110 (197)
T 4ezg_A           41 AQMNSLTYIT-LANINVTDLTGIEYAHNIKDLTINNIH---ATNY-NPISGLSNLERLRIMG-KDVTSD----KIPNLSG  110 (197)
T ss_dssp             HHHHTCCEEE-EESSCCSCCTTGGGCTTCSEEEEESCC---CSCC-GGGTTCTTCCEEEEEC-TTCBGG----GSCCCTT
T ss_pred             hhcCCccEEe-ccCCCccChHHHhcCCCCCEEEccCCC---CCcc-hhhhcCCCCCEEEeEC-CccCcc----cChhhcC
Confidence            4556666666 665555 22256667777777777773   2222 3566677777777777 444 22    23 6666


Q ss_pred             CCCCCceEEeeecccCCCCchhhhcCCCCceEEeccCC-ccCceeeecCCCCCccccEEEecCCccccceeccccccccc
Q 036414          115 FPPSLTQLSLSNTELIEDPMPTLEKLPHLEVLKLKQNS-YFERKLACVGCSSFPQLKILHLKSMLWLEEWTMGAGAMPKL  193 (252)
Q Consensus       115 ~~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~-~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~l~~L  193 (252)
                      + ++|++|++++|.++...+..++.+++|++|++++|. +...  . . ...+++|+.|++++|+ +++++ .+..+++|
T Consensus       111 l-~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~--~-~-l~~l~~L~~L~l~~n~-i~~~~-~l~~l~~L  183 (197)
T 4ezg_A          111 L-TSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDI--M-P-LKTLPELKSLNIQFDG-VHDYR-GIEDFPKL  183 (197)
T ss_dssp             C-TTCCEEECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCCCC--G-G-GGGCSSCCEEECTTBC-CCCCT-TGGGCSSC
T ss_pred             C-CCCCEEEecCCccCcHhHHHHhhCCCCCEEEccCCCCcccc--H-h-hcCCCCCCEEECCCCC-CcChH-HhccCCCC
Confidence            6 788888888887776667777788888888887776 4432  1 2 5577888888888887 77666 46778888


Q ss_pred             cceeeccCCC
Q 036414          194 ESLILNPCAY  203 (252)
Q Consensus       194 ~~L~l~~~~~  203 (252)
                      +.|++++|..
T Consensus       184 ~~L~l~~N~i  193 (197)
T 4ezg_A          184 NQLYAFSQTI  193 (197)
T ss_dssp             CEEEECBC--
T ss_pred             CEEEeeCccc
Confidence            8888888764

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=99.66  E-value=2.3e-16  Score=131.73  Aligned_cols=216  Identities=18%  Similarity=0.176  Sum_probs=110.9

Q ss_pred             CCCccccchH-HHhhccccEEEecCCCCCCCCC----cccCCCC-CCcEecccCCCCC---chhhcCCC-----CCccEE
Q 036414            3 SSYIDHSSED-IWMMQKLMHLNFGSITLPAPPK----NYSSSLK-NLIFISALHPSSC---TPDILSRL-----PTVQTL   68 (252)
Q Consensus         3 ~~~l~~lp~~-i~~l~~L~~L~l~~~~~~~~~~----~~l~~l~-~L~~L~~l~~~~~---~~~~l~~l-----~~L~~L   68 (252)
                      .+.++..... +...++|++|++++|.+....+    ..+..++ +|++|+ ++.|.+   .+..+..+     ++|++|
T Consensus         7 ~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~-Ls~N~l~~~~~~~l~~~l~~~~~~L~~L   85 (362)
T 3goz_A            7 LHPGSNPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLN-LSGNSLGFKNSDELVQILAAIPANVTSL   85 (362)
T ss_dssp             CCTTCCHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEE-CCSSCGGGSCHHHHHHHHHTSCTTCCEE
T ss_pred             cccchHHHHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEE-CcCCCCCHHHHHHHHHHHhccCCCccEE
Confidence            4555544333 3444447888887766655444    5566676 777777 777665   23333332     777777


Q ss_pred             EeeccCCccccchhH----hhhcc-CCCCeEEeeeccchhHH--HHhhc-cccCCCCCCceEEeeecccCCCCchhh---
Q 036414           69 RISGDLSHYHSGVSK----SLCEL-HKLECLKLANQGKMWQI--TRMIL-SEYKFPPSLTQLSLSNTELIEDPMPTL---  137 (252)
Q Consensus        69 ~l~~~~~~~~~~~~~----~l~~l-~~L~~L~l~~~~~~~~~--~~l~~-~~~~~~~~L~~l~l~~~~~~~~~~~~l---  137 (252)
                      ++++|.  .....+.    .+..+ ++|++|++++ +.+...  .. +. .+..++++|++|++++|.+++.....+   
T Consensus        86 ~Ls~n~--l~~~~~~~l~~~l~~~~~~L~~L~Ls~-N~l~~~~~~~-l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~  161 (362)
T 3goz_A           86 NLSGNF--LSYKSSDELVKTLAAIPFTITVLDLGW-NDFSSKSSSE-FKQAFSNLPASITSLNLRGNDLGIKSSDELIQI  161 (362)
T ss_dssp             ECCSSC--GGGSCHHHHHHHHHTSCTTCCEEECCS-SCGGGSCHHH-HHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHH
T ss_pred             ECcCCc--CChHHHHHHHHHHHhCCCCccEEECcC-CcCCcHHHHH-HHHHHHhCCCceeEEEccCCcCCHHHHHHHHHH
Confidence            777775  3323332    34444 6777777777 334220  00 11 223323566777777666664433332   


Q ss_pred             -hcCC-CCceEEeccCCccCceee---ecCCCCC-ccccEEEecCCccccc-----eeccccc-cccccceeeccCCCCC
Q 036414          138 -EKLP-HLEVLKLKQNSYFERKLA---CVGCSSF-PQLKILHLKSMLWLEE-----WTMGAGA-MPKLESLILNPCAYLR  205 (252)
Q Consensus       138 -~~~~-~L~~L~l~~~~~~~~~~~---~~~~~~~-~~L~~L~l~~~~~l~~-----~~~~~~~-l~~L~~L~l~~~~~~~  205 (252)
                       ...+ +|++|++++|.+......   .. ...+ ++|++|++++|. +++     ++..+.. .++|+.|++++|...+
T Consensus       162 l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~-l~~~~~~L~~L~Ls~N~-i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~  239 (362)
T 3goz_A          162 LAAIPANVNSLNLRGNNLASKNCAELAKF-LASIPASVTSLDLSANL-LGLKSYAELAYIFSSIPNHVVSLNLCLNCLHG  239 (362)
T ss_dssp             HHTSCTTCCEEECTTSCGGGSCHHHHHHH-HHTSCTTCCEEECTTSC-GGGSCHHHHHHHHHHSCTTCCEEECCSSCCCC
T ss_pred             HhcCCccccEeeecCCCCchhhHHHHHHH-HHhCCCCCCEEECCCCC-CChhHHHHHHHHHhcCCCCceEEECcCCCCCc
Confidence             3333 666666666665432211   01 1233 366666666666 544     2222222 2356666666665443


Q ss_pred             CChH----HHHhccccceeecccC
Q 036414          206 KLPE----ELWRIKSLCKLELHWP  225 (252)
Q Consensus       206 ~~p~----~l~~l~~L~~L~l~~~  225 (252)
                      .-+.    .+..+++|++|+++++
T Consensus       240 ~~~~~l~~~~~~l~~L~~L~L~~n  263 (362)
T 3goz_A          240 PSLENLKLLKDSLKHLQTVYLDYD  263 (362)
T ss_dssp             CCHHHHHHTTTTTTTCSEEEEEHH
T ss_pred             HHHHHHHHHHhcCCCccEEEeccC
Confidence            2221    1233455555555544

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=99.66  E-value=3.1e-16  Score=120.76  Aligned_cols=157  Identities=18%  Similarity=0.219  Sum_probs=94.5

Q ss_pred             CCCcEecccCCCCC--ch-hhcCCCCCccEEEeeccCCccccchhHhhhccCCCCeEEeeeccchhHHHHhhc--cccCC
Q 036414           41 KNLIFISALHPSSC--TP-DILSRLPTVQTLRISGDLSHYHSGVSKSLCELHKLECLKLANQGKMWQITRMIL--SEYKF  115 (252)
Q Consensus        41 ~~L~~L~~l~~~~~--~~-~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~l~~--~~~~~  115 (252)
                      ++|++|+ ++.+..  .+ ..++.+++|++|++++|.  .....+..+..+++|++|++++ +.+..    ++  .+..+
T Consensus        28 ~~l~~L~-l~~n~l~~~~~~~~~~l~~L~~L~l~~n~--l~~~~~~~~~~l~~L~~L~Ls~-n~l~~----~~~~~~~~l   99 (208)
T 2o6s_A           28 AQTTYLD-LETNSLKSLPNGVFDELTSLTQLYLGGNK--LQSLPNGVFNKLTSLTYLNLST-NQLQS----LPNGVFDKL   99 (208)
T ss_dssp             TTCSEEE-CCSSCCCCCCTTTTTTCTTCSEEECCSSC--CCCCCTTTTTTCTTCCEEECCS-SCCCC----CCTTTTTTC
T ss_pred             CCCcEEE-cCCCccCcCChhhhcccccCcEEECCCCc--cCccChhhcCCCCCcCEEECCC-CcCCc----cCHhHhcCc
Confidence            3566666 555544  22 224566666666666664  2222223345666777777766 44433    34  34556


Q ss_pred             CCCCceEEeeecccCCCCchhhhcCCCCceEEeccCCccCceeeecCCCCCccccEEEecCCccccceeccccccccccc
Q 036414          116 PPSLTQLSLSNTELIEDPMPTLEKLPHLEVLKLKQNSYFERKLACVGCSSFPQLKILHLKSMLWLEEWTMGAGAMPKLES  195 (252)
Q Consensus       116 ~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~l~~L~~  195 (252)
                       ++|++|++++|.+....+..+..+++|+.|++++|.+...... . +..+++|++|++++|+ +      .+.+++|+.
T Consensus       100 -~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~-~-~~~l~~L~~L~l~~N~-~------~~~~~~l~~  169 (208)
T 2o6s_A          100 -TQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDG-V-FDRLTSLQYIWLHDNP-W------DCTCPGIRY  169 (208)
T ss_dssp             -TTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTT-T-TTTCTTCCEEECCSCC-B------CCCTTTTHH
T ss_pred             -cCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCccceeCHH-H-hccCCCccEEEecCCC-e------ecCCCCHHH
Confidence             7777777777777755555667777777777777766542221 2 4567777777777776 2      245667777


Q ss_pred             eeeccCCCCCCChHHHHhcc
Q 036414          196 LILNPCAYLRKLPEELWRIK  215 (252)
Q Consensus       196 L~l~~~~~~~~~p~~l~~l~  215 (252)
                      |+++.|...+.+|..++.++
T Consensus       170 L~~~~n~~~g~ip~~~~~l~  189 (208)
T 2o6s_A          170 LSEWINKHSGVVRNSAGSVA  189 (208)
T ss_dssp             HHHHHHHCTTTBBCTTSSBC
T ss_pred             HHHHHHhCCceeeccCcccc
Confidence            77777776666776555444

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=99.65  E-value=3.6e-16  Score=119.50  Aligned_cols=152  Identities=13%  Similarity=0.183  Sum_probs=126.5

Q ss_pred             CCCCCccEEEeeccCCccccchhHhhhccCCCCeEEeeeccchhHHHHhhccccCCCCCCceEEeeecccCCCCchhhhc
Q 036414           60 SRLPTVQTLRISGDLSHYHSGVSKSLCELHKLECLKLANQGKMWQITRMILSEYKFPPSLTQLSLSNTELIEDPMPTLEK  139 (252)
Q Consensus        60 ~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~l~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~  139 (252)
                      +.+++|+.|+++++.   ...++ .+..+++|++|++.+| .+..    ++.+..+ ++|++|++++|.++...+..++.
T Consensus        41 ~~l~~L~~L~l~~n~---i~~l~-~l~~l~~L~~L~l~~n-~~~~----~~~l~~l-~~L~~L~l~~n~l~~~~~~~l~~  110 (197)
T 4ezg_A           41 AQMNSLTYITLANIN---VTDLT-GIEYAHNIKDLTINNI-HATN----YNPISGL-SNLERLRIMGKDVTSDKIPNLSG  110 (197)
T ss_dssp             HHHHTCCEEEEESSC---CSCCT-TGGGCTTCSEEEEESC-CCSC----CGGGTTC-TTCCEEEEECTTCBGGGSCCCTT
T ss_pred             hhcCCccEEeccCCC---ccChH-HHhcCCCCCEEEccCC-CCCc----chhhhcC-CCCCEEEeECCccCcccChhhcC
Confidence            557899999999995   44556 6889999999999995 5554    5577888 99999999999998767888899


Q ss_pred             CCCCceEEeccCCccCceeeecCCCCCccccEEEecCCccccceeccccccccccceeeccCCCCCCChHHHHhccccce
Q 036414          140 LPHLEVLKLKQNSYFERKLACVGCSSFPQLKILHLKSMLWLEEWTMGAGAMPKLESLILNPCAYLRKLPEELWRIKSLCK  219 (252)
Q Consensus       140 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~  219 (252)
                      +++|++|++++|.+....+. . ...+++|++|++++|..+++++ .++.+++|+.|++++|... .++ .+..+++|++
T Consensus       111 l~~L~~L~Ls~n~i~~~~~~-~-l~~l~~L~~L~L~~n~~i~~~~-~l~~l~~L~~L~l~~n~i~-~~~-~l~~l~~L~~  185 (197)
T 4ezg_A          111 LTSLTLLDISHSAHDDSILT-K-INTLPKVNSIDLSYNGAITDIM-PLKTLPELKSLNIQFDGVH-DYR-GIEDFPKLNQ  185 (197)
T ss_dssp             CTTCCEEECCSSBCBGGGHH-H-HTTCSSCCEEECCSCTBCCCCG-GGGGCSSCCEEECTTBCCC-CCT-TGGGCSSCCE
T ss_pred             CCCCCEEEecCCccCcHhHH-H-HhhCCCCCEEEccCCCCccccH-hhcCCCCCCEEECCCCCCc-ChH-HhccCCCCCE
Confidence            99999999999988763333 3 5689999999999998677776 4888999999999999875 455 6788999999


Q ss_pred             eecccCC
Q 036414          220 LELHWPQ  226 (252)
Q Consensus       220 L~l~~~~  226 (252)
                      |++.+.+
T Consensus       186 L~l~~N~  192 (197)
T 4ezg_A          186 LYAFSQT  192 (197)
T ss_dssp             EEECBC-
T ss_pred             EEeeCcc
Confidence            9998875

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=99.64  E-value=4.1e-17  Score=140.20  Aligned_cols=83  Identities=16%  Similarity=0.151  Sum_probs=38.5

Q ss_pred             HHhhccccEEEecCCCCCC----CCCcccCCCCCCcEecccCCCCC---chhhc-CCCC----CccEEEeeccCCccc--
Q 036414           13 IWMMQKLMHLNFGSITLPA----PPKNYSSSLKNLIFISALHPSSC---TPDIL-SRLP----TVQTLRISGDLSHYH--   78 (252)
Q Consensus        13 i~~l~~L~~L~l~~~~~~~----~~~~~l~~l~~L~~L~~l~~~~~---~~~~l-~~l~----~L~~L~l~~~~~~~~--   78 (252)
                      +..+++|++|++++|.+..    .++..+..+++|++|+ ++.+..   .+..+ ..+.    +|++|++++|.  ..  
T Consensus        24 ~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~-Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~L~~n~--i~~~  100 (461)
T 1z7x_W           24 LPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELN-LRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCC--LTGA  100 (461)
T ss_dssp             HHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEE-CTTCCCHHHHHHHHHHTTCSTTCCCCEEECTTSC--CBGG
T ss_pred             HhhcCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEe-CCCCcCChHHHHHHHHHHhhCCCceeEEEccCCC--CCHH
Confidence            4455555555555544332    2233444555555555 555444   11111 1122    45555555553  22  


Q ss_pred             --cchhHhhhccCCCCeEEeee
Q 036414           79 --SGVSKSLCELHKLECLKLAN   98 (252)
Q Consensus        79 --~~~~~~l~~l~~L~~L~l~~   98 (252)
                        ..++..+..+++|++|++++
T Consensus       101 ~~~~l~~~l~~~~~L~~L~Ls~  122 (461)
T 1z7x_W          101 GCGVLSSTLRTLPTLQELHLSD  122 (461)
T ss_dssp             GHHHHHHHTTSCTTCCEEECCS
T ss_pred             HHHHHHHHHccCCceeEEECCC
Confidence              23444555555555555555

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=99.64  E-value=7.5e-16  Score=135.30  Aligned_cols=173  Identities=15%  Similarity=0.186  Sum_probs=125.4

Q ss_pred             cccEEEecCCCCCCCCCcccCCCCCCcEecccCCCCC--chhhcCCCCCccEEEeeccCCccccchhHhhhccCCCCeEE
Q 036414           18 KLMHLNFGSITLPAPPKNYSSSLKNLIFISALHPSSC--TPDILSRLPTVQTLRISGDLSHYHSGVSKSLCELHKLECLK   95 (252)
Q Consensus        18 ~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~~l~~~~~--~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~   95 (252)
                      ++++|++++|.+.. +|..+.  ++|+.|+ ++.|.+  +|   +.+++|+.|++++|.   ...+|. +.+  +|++|+
T Consensus        60 ~L~~L~Ls~n~L~~-lp~~l~--~~L~~L~-Ls~N~l~~ip---~~l~~L~~L~Ls~N~---l~~ip~-l~~--~L~~L~  126 (571)
T 3cvr_A           60 QFSELQLNRLNLSS-LPDNLP--PQITVLE-ITQNALISLP---ELPASLEYLDACDNR---LSTLPE-LPA--SLKHLD  126 (571)
T ss_dssp             TCSEEECCSSCCSC-CCSCCC--TTCSEEE-CCSSCCSCCC---CCCTTCCEEECCSSC---CSCCCC-CCT--TCCEEE
T ss_pred             CccEEEeCCCCCCc-cCHhHc--CCCCEEE-CcCCCCcccc---cccCCCCEEEccCCC---CCCcch-hhc--CCCEEE
Confidence            88899998776654 666553  7888888 888877  44   567889999998885   333565 444  888888


Q ss_pred             eeeccchhHHHHhhccccCCCCCCceEEeeecccCCCCchhhhcCCCCceEEeccCCccCceeeecCCCCCccccEEEec
Q 036414           96 LANQGKMWQITRMILSEYKFPPSLTQLSLSNTELIEDPMPTLEKLPHLEVLKLKQNSYFERKLACVGCSSFPQLKILHLK  175 (252)
Q Consensus        96 l~~~~~~~~~~~l~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~  175 (252)
                      +++ +.+..    +|.  .+ ++|+.|++++|.++. .|.   .+++|+.|++++|.+.....  .  .  ++|+.|+++
T Consensus       127 Ls~-N~l~~----lp~--~l-~~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~L~~lp~--l--~--~~L~~L~Ls  188 (571)
T 3cvr_A          127 VDN-NQLTM----LPE--LP-ALLEYINADNNQLTM-LPE---LPTSLEVLSVRNNQLTFLPE--L--P--ESLEALDVS  188 (571)
T ss_dssp             CCS-SCCSC----CCC--CC-TTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSCCCC--C--C--TTCCEEECC
T ss_pred             CCC-CcCCC----CCC--cC-ccccEEeCCCCccCc-CCC---cCCCcCEEECCCCCCCCcch--h--h--CCCCEEECc
Confidence            888 55555    565  44 888888888888875 333   46788888888887765221  2  1  788888888


Q ss_pred             CCccccceeccccccccc-------cceeeccCCCCCCChHHHHhccccceeecccCC
Q 036414          176 SMLWLEEWTMGAGAMPKL-------ESLILNPCAYLRKLPEELWRIKSLCKLELHWPQ  226 (252)
Q Consensus       176 ~~~~l~~~~~~~~~l~~L-------~~L~l~~~~~~~~~p~~l~~l~~L~~L~l~~~~  226 (252)
                      +|. ++.++. +..  +|       +.|++++|... .+|..+..+++|+.|++++++
T Consensus       189 ~N~-L~~lp~-~~~--~L~~~~~~L~~L~Ls~N~l~-~lp~~l~~l~~L~~L~L~~N~  241 (571)
T 3cvr_A          189 TNL-LESLPA-VPV--RNHHSEETEIFFRCRENRIT-HIPENILSLDPTCTIILEDNP  241 (571)
T ss_dssp             SSC-CSSCCC-CC----------CCEEEECCSSCCC-CCCGGGGGSCTTEEEECCSSS
T ss_pred             CCC-CCchhh-HHH--hhhcccccceEEecCCCcce-ecCHHHhcCCCCCEEEeeCCc
Confidence            887 777766 433  66       88888888764 688877778888888888875

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=99.64  E-value=5e-15  Score=131.45  Aligned_cols=193  Identities=19%  Similarity=0.193  Sum_probs=113.9

Q ss_pred             CCCCccccchHHHhhccccEEEecCCCCCCCCCcccCCCCCCcEecccCCCCC--chhhcCCCCCccEEEeeccCCcccc
Q 036414            2 PSSYIDHSSEDIWMMQKLMHLNFGSITLPAPPKNYSSSLKNLIFISALHPSSC--TPDILSRLPTVQTLRISGDLSHYHS   79 (252)
Q Consensus         2 ~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~~l~~~~~--~~~~l~~l~~L~~L~l~~~~~~~~~   79 (252)
                      .++.++.+|.   .+++|++|++++|.+. .+|.   .+++|++|+ ++.|.+  ++.   .+++|+.|++++|.   ..
T Consensus        69 ~~N~l~~lp~---~l~~L~~L~Ls~N~l~-~lp~---~l~~L~~L~-Ls~N~l~~l~~---~l~~L~~L~L~~N~---l~  134 (622)
T 3g06_A           69 PDNNLTSLPA---LPPELRTLEVSGNQLT-SLPV---LPPGLLELS-IFSNPLTHLPA---LPSGLCKLWIFGNQ---LT  134 (622)
T ss_dssp             CSCCCSCCCC---CCTTCCEEEECSCCCS-CCCC---CCTTCCEEE-ECSCCCCCCCC---CCTTCCEEECCSSC---CS
T ss_pred             cCCCCCCCCC---cCCCCCEEEcCCCcCC-cCCC---CCCCCCEEE-CcCCcCCCCCC---CCCCcCEEECCCCC---CC
Confidence            3567777776   5678888888866644 4554   566777777 666654  222   33444555544442   22


Q ss_pred             chhHhhhccCCCCeEEeeeccchhHH-------HHh---------hccccCCCCCCceEEeeecccCCCCc--hhh----
Q 036414           80 GVSKSLCELHKLECLKLANQGKMWQI-------TRM---------ILSEYKFPPSLTQLSLSNTELIEDPM--PTL----  137 (252)
Q Consensus        80 ~~~~~l~~l~~L~~L~l~~~~~~~~~-------~~l---------~~~~~~~~~~L~~l~l~~~~~~~~~~--~~l----  137 (252)
                      .+|.   .+++|++|++++ +.+..+       +.|         +|  .. +++|+.|++++|.++....  ..+    
T Consensus       135 ~lp~---~l~~L~~L~Ls~-N~l~~l~~~~~~L~~L~L~~N~l~~l~--~~-~~~L~~L~Ls~N~l~~l~~~~~~L~~L~  207 (622)
T 3g06_A          135 SLPV---LPPGLQELSVSD-NQLASLPALPSELCKLWAYNNQLTSLP--ML-PSGLQELSVSDNQLASLPTLPSELYKLW  207 (622)
T ss_dssp             CCCC---CCTTCCEEECCS-SCCSCCCCCCTTCCEEECCSSCCSCCC--CC-CTTCCEEECCSSCCSCCCCCCTTCCEEE
T ss_pred             cCCC---CCCCCCEEECcC-CcCCCcCCccCCCCEEECCCCCCCCCc--cc-CCCCcEEECCCCCCCCCCCccchhhEEE
Confidence            2222   123344444433 111110       000         11  11 1445555555554442110  000    


Q ss_pred             ----------hcCCCCceEEeccCCccCceeeecCCCCCccccEEEecCCccccceeccccccccccceeeccCCCCCCC
Q 036414          138 ----------EKLPHLEVLKLKQNSYFERKLACVGCSSFPQLKILHLKSMLWLEEWTMGAGAMPKLESLILNPCAYLRKL  207 (252)
Q Consensus       138 ----------~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~~~~~~~~  207 (252)
                                ..+++|+.|++++|.+...      ...+++|+.|++++|. ++.++.   .+++|+.|++++|... .+
T Consensus       208 L~~N~l~~l~~~~~~L~~L~Ls~N~L~~l------p~~l~~L~~L~Ls~N~-L~~lp~---~~~~L~~L~Ls~N~L~-~l  276 (622)
T 3g06_A          208 AYNNRLTSLPALPSGLKELIVSGNRLTSL------PVLPSELKELMVSGNR-LTSLPM---LPSGLLSLSVYRNQLT-RL  276 (622)
T ss_dssp             CCSSCCSSCCCCCTTCCEEECCSSCCSCC------CCCCTTCCEEECCSSC-CSCCCC---CCTTCCEEECCSSCCC-SC
T ss_pred             CcCCcccccCCCCCCCCEEEccCCccCcC------CCCCCcCcEEECCCCC-CCcCCc---ccccCcEEeCCCCCCC-cC
Confidence                      1236677777777766541      1356889999999988 887766   6788999999999765 78


Q ss_pred             hHHHHhccccceeecccCC
Q 036414          208 PEELWRIKSLCKLELHWPQ  226 (252)
Q Consensus       208 p~~l~~l~~L~~L~l~~~~  226 (252)
                      |..+..+++|+.|++++++
T Consensus       277 p~~l~~l~~L~~L~L~~N~  295 (622)
T 3g06_A          277 PESLIHLSSETTVNLEGNP  295 (622)
T ss_dssp             CGGGGGSCTTCEEECCSCC
T ss_pred             CHHHhhccccCEEEecCCC
Confidence            9889999999999999886

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=99.64  E-value=8.4e-16  Score=136.16  Aligned_cols=188  Identities=23%  Similarity=0.278  Sum_probs=149.7

Q ss_pred             hccccEEEecCCCCCCCCCcccCCCCCCcEecccCCCCC-chhhcCCCCCccEEEeeccCCccccchhHhhhccCCCCeE
Q 036414           16 MQKLMHLNFGSITLPAPPKNYSSSLKNLIFISALHPSSC-TPDILSRLPTVQTLRISGDLSHYHSGVSKSLCELHKLECL   94 (252)
Q Consensus        16 l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~~l~~~~~-~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L   94 (252)
                      +.++..+.+..+.... + ..+..+.+|+.|+ ++.+.+ .++.+..+++|+.|+|++|.   ...++. +..+++|+.|
T Consensus        20 l~~l~~l~l~~~~i~~-~-~~~~~L~~L~~L~-l~~n~i~~l~~l~~l~~L~~L~Ls~N~---l~~~~~-l~~l~~L~~L   92 (605)
T 1m9s_A           20 FAETIKDNLKKKSVTD-A-VTQNELNSIDQII-ANNSDIKSVQGIQYLPNVTKLFLNGNK---LTDIKP-LTNLKNLGWL   92 (605)
T ss_dssp             HHHHHHHHTTCSCTTS-E-ECHHHHTTCCCCB-CTTCCCCCCTTGGGCTTCCEEECTTSC---CCCCGG-GGGCTTCCEE
T ss_pred             HHHHHHHhccCCCccc-c-cchhcCCCCCEEE-CcCCCCCCChHHccCCCCCEEEeeCCC---CCCChh-hccCCCCCEE
Confidence            3445555565333322 2 2256788999999 888877 45578899999999999995   344444 8899999999


Q ss_pred             EeeeccchhHHHHhhccccCCCCCCceEEeeecccCCCCchhhhcCCCCceEEeccCCccCceeeecCCCCCccccEEEe
Q 036414           95 KLANQGKMWQITRMILSEYKFPPSLTQLSLSNTELIEDPMPTLEKLPHLEVLKLKQNSYFERKLACVGCSSFPQLKILHL  174 (252)
Q Consensus        95 ~l~~~~~~~~~~~l~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l  174 (252)
                      ++++ +.+..    ++.+..+ ++|+.|++++|.+..  +..+..+++|+.|++++|.+...   .. +..+++|+.|+|
T Consensus        93 ~Ls~-N~l~~----l~~l~~l-~~L~~L~Ls~N~l~~--l~~l~~l~~L~~L~Ls~N~l~~l---~~-l~~l~~L~~L~L  160 (605)
T 1m9s_A           93 FLDE-NKIKD----LSSLKDL-KKLKSLSLEHNGISD--INGLVHLPQLESLYLGNNKITDI---TV-LSRLTKLDTLSL  160 (605)
T ss_dssp             ECCS-SCCCC----CTTSTTC-TTCCEEECTTSCCCC--CGGGGGCTTCSEEECCSSCCCCC---GG-GGSCTTCSEEEC
T ss_pred             ECcC-CCCCC----ChhhccC-CCCCEEEecCCCCCC--CccccCCCccCEEECCCCccCCc---hh-hcccCCCCEEEC
Confidence            9999 56655    6678888 999999999999984  35688999999999999988764   23 678999999999


Q ss_pred             cCCccccceeccccccccccceeeccCCCCCCChHHHHhccccceeecccCC
Q 036414          175 KSMLWLEEWTMGAGAMPKLESLILNPCAYLRKLPEELWRIKSLCKLELHWPQ  226 (252)
Q Consensus       175 ~~~~~l~~~~~~~~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~l~~~~  226 (252)
                      ++|. +..++. +..+++|+.|++++|... .++ .+..+++|+.|++++++
T Consensus       161 s~N~-l~~~~~-l~~l~~L~~L~Ls~N~i~-~l~-~l~~l~~L~~L~L~~N~  208 (605)
T 1m9s_A          161 EDNQ-ISDIVP-LAGLTKLQNLYLSKNHIS-DLR-ALAGLKNLDVLELFSQE  208 (605)
T ss_dssp             CSSC-CCCCGG-GTTCTTCCEEECCSSCCC-BCG-GGTTCTTCSEEECCSEE
T ss_pred             cCCc-CCCchh-hccCCCCCEEECcCCCCC-CCh-HHccCCCCCEEEccCCc
Confidence            9999 887766 889999999999999875 455 57889999999999764

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=99.63  E-value=1.7e-17  Score=138.54  Aligned_cols=214  Identities=15%  Similarity=0.148  Sum_probs=151.5

Q ss_pred             CCCccccc-----hHHHhhc-cccEEEecCCCCCCCCCcccCCC-----CCCcEecccCCCCC---chhh----cCCC-C
Q 036414            3 SSYIDHSS-----EDIWMMQ-KLMHLNFGSITLPAPPKNYSSSL-----KNLIFISALHPSSC---TPDI----LSRL-P   63 (252)
Q Consensus         3 ~~~l~~lp-----~~i~~l~-~L~~L~l~~~~~~~~~~~~l~~l-----~~L~~L~~l~~~~~---~~~~----l~~l-~   63 (252)
                      ++.++..+     ..+..++ +|++|++++|.+....+..+..+     ++|++|+ ++.|..   .+..    +..+ +
T Consensus        31 ~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~-Ls~n~l~~~~~~~l~~~l~~~~~  109 (362)
T 3goz_A           31 LNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLN-LSGNFLSYKSSDELVKTLAAIPF  109 (362)
T ss_dssp             TSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEE-CCSSCGGGSCHHHHHHHHHTSCT
T ss_pred             CCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEE-CcCCcCChHHHHHHHHHHHhCCC
Confidence            46677776     5677888 89999999888877666666665     8999999 998876   2332    4445 8


Q ss_pred             CccEEEeeccCCccccchh----Hhhhcc-CCCCeEEeeeccchh-----HHHHhhc-cccCCCCCCceEEeeecccCCC
Q 036414           64 TVQTLRISGDLSHYHSGVS----KSLCEL-HKLECLKLANQGKMW-----QITRMIL-SEYKFPPSLTQLSLSNTELIED  132 (252)
Q Consensus        64 ~L~~L~l~~~~~~~~~~~~----~~l~~l-~~L~~L~l~~~~~~~-----~~~~l~~-~~~~~~~~L~~l~l~~~~~~~~  132 (252)
                      +|++|++++|.  .....+    ..+..+ ++|++|++++ +.+.     .    ++ .+...+++|++|++++|.++..
T Consensus       110 ~L~~L~Ls~N~--l~~~~~~~l~~~l~~~~~~L~~L~Ls~-N~l~~~~~~~----l~~~l~~~~~~L~~L~Ls~n~l~~~  182 (362)
T 3goz_A          110 TITVLDLGWND--FSSKSSSEFKQAFSNLPASITSLNLRG-NDLGIKSSDE----LIQILAAIPANVNSLNLRGNNLASK  182 (362)
T ss_dssp             TCCEEECCSSC--GGGSCHHHHHHHHTTSCTTCCEEECTT-SCGGGSCHHH----HHHHHHTSCTTCCEEECTTSCGGGS
T ss_pred             CccEEECcCCc--CCcHHHHHHHHHHHhCCCceeEEEccC-CcCCHHHHHH----HHHHHhcCCccccEeeecCCCCchh
Confidence            99999999997  333333    334443 6999999998 4442     3    44 5556634999999999999877


Q ss_pred             Cchhhh----cC-CCCceEEeccCCccCceee---ecCCCC-CccccEEEecCCcccccee-----ccccccccccceee
Q 036414          133 PMPTLE----KL-PHLEVLKLKQNSYFERKLA---CVGCSS-FPQLKILHLKSMLWLEEWT-----MGAGAMPKLESLIL  198 (252)
Q Consensus       133 ~~~~l~----~~-~~L~~L~l~~~~~~~~~~~---~~~~~~-~~~L~~L~l~~~~~l~~~~-----~~~~~l~~L~~L~l  198 (252)
                      .+..+.    .+ ++|++|++++|.+......   .. ... .++|++|++++|. +++..     .....+++|+.|++
T Consensus       183 ~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~-l~~~~~~L~~L~Ls~N~-l~~~~~~~l~~~~~~l~~L~~L~L  260 (362)
T 3goz_A          183 NCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYI-FSSIPNHVVSLNLCLNC-LHGPSLENLKLLKDSLKHLQTVYL  260 (362)
T ss_dssp             CHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHH-HHHSCTTCCEEECCSSC-CCCCCHHHHHHTTTTTTTCSEEEE
T ss_pred             hHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHH-HhcCCCCceEEECcCCC-CCcHHHHHHHHHHhcCCCccEEEe
Confidence            765443    45 5999999999987652211   11 222 4589999999998 76542     33467889999999


Q ss_pred             ccCCCCCCC-------hHHHHhccccceeecccCC
Q 036414          199 NPCAYLRKL-------PEELWRIKSLCKLELHWPQ  226 (252)
Q Consensus       199 ~~~~~~~~~-------p~~l~~l~~L~~L~l~~~~  226 (252)
                      ++|.....-       +..+..+++|+.|+++++.
T Consensus       261 ~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~  295 (362)
T 3goz_A          261 DYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKE  295 (362)
T ss_dssp             EHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSCB
T ss_pred             ccCCccccCHHHHHHHHHHhccCCceEEEecCCCc
Confidence            999733221       2234566788889998764

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=99.63  E-value=4.6e-15  Score=130.29  Aligned_cols=180  Identities=13%  Similarity=0.110  Sum_probs=142.6

Q ss_pred             CCCCccccchHHHhhccccEEEecCCCCCCCCCcccCCCCCCcEecccCCCCC--chhhcCCCCCccEEEeeccCCcccc
Q 036414            2 PSSYIDHSSEDIWMMQKLMHLNFGSITLPAPPKNYSSSLKNLIFISALHPSSC--TPDILSRLPTVQTLRISGDLSHYHS   79 (252)
Q Consensus         2 ~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~~l~~~~~--~~~~l~~l~~L~~L~l~~~~~~~~~   79 (252)
                      .++.++.+|..+.  ++|++|++++|.+. .+|   ..+++|++|+ ++.|.+  +|. ++.  +|+.|++++|.   ..
T Consensus        67 s~n~L~~lp~~l~--~~L~~L~Ls~N~l~-~ip---~~l~~L~~L~-Ls~N~l~~ip~-l~~--~L~~L~Ls~N~---l~  133 (571)
T 3cvr_A           67 NRLNLSSLPDNLP--PQITVLEITQNALI-SLP---ELPASLEYLD-ACDNRLSTLPE-LPA--SLKHLDVDNNQ---LT  133 (571)
T ss_dssp             CSSCCSCCCSCCC--TTCSEEECCSSCCS-CCC---CCCTTCCEEE-CCSSCCSCCCC-CCT--TCCEEECCSSC---CS
T ss_pred             CCCCCCccCHhHc--CCCCEEECcCCCCc-ccc---cccCCCCEEE-ccCCCCCCcch-hhc--CCCEEECCCCc---CC
Confidence            4678888998764  78999999987766 677   5678999999 998877  555 554  99999999995   34


Q ss_pred             chhHhhhccCCCCeEEeeeccchhHHHHhhccccCCCCCCceEEeeecccCCCCchhhhcCCCCceEEeccCCccCceee
Q 036414           80 GVSKSLCELHKLECLKLANQGKMWQITRMILSEYKFPPSLTQLSLSNTELIEDPMPTLEKLPHLEVLKLKQNSYFERKLA  159 (252)
Q Consensus        80 ~~~~~l~~l~~L~~L~l~~~~~~~~~~~l~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~  159 (252)
                      .+|.   .+++|+.|++++ +.+..    +|.  .+ ++|++|++++|.++. .|. +.  ++|+.|++++|.+..... 
T Consensus       134 ~lp~---~l~~L~~L~Ls~-N~l~~----lp~--~l-~~L~~L~Ls~N~L~~-lp~-l~--~~L~~L~Ls~N~L~~lp~-  197 (571)
T 3cvr_A          134 MLPE---LPALLEYINADN-NQLTM----LPE--LP-TSLEVLSVRNNQLTF-LPE-LP--ESLEALDVSTNLLESLPA-  197 (571)
T ss_dssp             CCCC---CCTTCCEEECCS-SCCSC----CCC--CC-TTCCEEECCSSCCSC-CCC-CC--TTCCEEECCSSCCSSCCC-
T ss_pred             CCCC---cCccccEEeCCC-CccCc----CCC--cC-CCcCEEECCCCCCCC-cch-hh--CCCCEEECcCCCCCchhh-
Confidence            4665   689999999999 65655    564  34 899999999999986 444 54  899999999998874322 


Q ss_pred             ecCCCCCccc-------cEEEecCCccccceeccccccccccceeeccCCCCCCChHHHHhccc
Q 036414          160 CVGCSSFPQL-------KILHLKSMLWLEEWTMGAGAMPKLESLILNPCAYLRKLPEELWRIKS  216 (252)
Q Consensus       160 ~~~~~~~~~L-------~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~~~~~~~~p~~l~~l~~  216 (252)
                      +.     .+|       +.|++++|. ++.+|..+..+++|+.|++++|+..+..|..+..+..
T Consensus       198 ~~-----~~L~~~~~~L~~L~Ls~N~-l~~lp~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~  255 (571)
T 3cvr_A          198 VP-----VRNHHSEETEIFFRCRENR-ITHIPENILSLDPTCTIILEDNPLSSRIRESLSQQTA  255 (571)
T ss_dssp             CC-------------CCEEEECCSSC-CCCCCGGGGGSCTTEEEECCSSSCCHHHHHHHHHHHH
T ss_pred             HH-----HhhhcccccceEEecCCCc-ceecCHHHhcCCCCCEEEeeCCcCCCcCHHHHHHhhc
Confidence            22     156       999999999 9999988888999999999999988777877766543

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=99.62  E-value=1.5e-15  Score=116.92  Aligned_cols=170  Identities=18%  Similarity=0.210  Sum_probs=128.0

Q ss_pred             CCCccccchHHHhhccccEEEecCCCCCCCCCcccCCCCCCcEecccCCCCC--chh-hcCCCCCccEEEeeccCCcccc
Q 036414            3 SSYIDHSSEDIWMMQKLMHLNFGSITLPAPPKNYSSSLKNLIFISALHPSSC--TPD-ILSRLPTVQTLRISGDLSHYHS   79 (252)
Q Consensus         3 ~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~~l~~~~~--~~~-~l~~l~~L~~L~l~~~~~~~~~   79 (252)
                      ++.++++|..+  .++|++|++++|.+....+..+..+++|++|+ ++.+.+  .+. .+..+++|++|++++|.  ...
T Consensus        16 ~~~l~~~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~-l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~--l~~   90 (208)
T 2o6s_A           16 SQGRTSVPTGI--PAQTTYLDLETNSLKSLPNGVFDELTSLTQLY-LGGNKLQSLPNGVFNKLTSLTYLNLSTNQ--LQS   90 (208)
T ss_dssp             SSCCSSCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEE-CCSSCCCCCCTTTTTTCTTCCEEECCSSC--CCC
T ss_pred             CCCccCCCCCC--CCCCcEEEcCCCccCcCChhhhcccccCcEEE-CCCCccCccChhhcCCCCCcCEEECCCCc--CCc
Confidence            45677777655  35899999998877755555678899999999 888776  333 36789999999999985  333


Q ss_pred             chhHhhhccCCCCeEEeeeccchhHHHHhhc--cccCCCCCCceEEeeecccCCCCchhhhcCCCCceEEeccCCccCce
Q 036414           80 GVSKSLCELHKLECLKLANQGKMWQITRMIL--SEYKFPPSLTQLSLSNTELIEDPMPTLEKLPHLEVLKLKQNSYFERK  157 (252)
Q Consensus        80 ~~~~~l~~l~~L~~L~l~~~~~~~~~~~l~~--~~~~~~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~  157 (252)
                      ..+..+..+++|++|++++ +.+..    ++  .+..+ ++|++|++++|.++...+..+..+++|+.|++++|.+    
T Consensus        91 ~~~~~~~~l~~L~~L~L~~-N~l~~----~~~~~~~~l-~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~----  160 (208)
T 2o6s_A           91 LPNGVFDKLTQLKELALNT-NQLQS----LPDGVFDKL-TQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPW----  160 (208)
T ss_dssp             CCTTTTTTCTTCCEEECCS-SCCCC----CCTTTTTTC-TTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCB----
T ss_pred             cCHhHhcCccCCCEEEcCC-CcCcc----cCHhHhccC-CcCCEEECCCCccceeCHHHhccCCCccEEEecCCCe----
Confidence            3334568899999999988 55655    45  46777 8999999999998876667788899999999988754    


Q ss_pred             eeecCCCCCccccEEEecCCccccceecccccccc
Q 036414          158 LACVGCSSFPQLKILHLKSMLWLEEWTMGAGAMPK  192 (252)
Q Consensus       158 ~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~l~~  192 (252)
                           .+.++.|+.|+++.|..-..+|..++.++.
T Consensus       161 -----~~~~~~l~~L~~~~n~~~g~ip~~~~~l~~  190 (208)
T 2o6s_A          161 -----DCTCPGIRYLSEWINKHSGVVRNSAGSVAP  190 (208)
T ss_dssp             -----CCCTTTTHHHHHHHHHCTTTBBCTTSSBCT
T ss_pred             -----ecCCCCHHHHHHHHHhCCceeeccCccccC
Confidence                 345788999988888833356776666553

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=99.62  E-value=3e-15  Score=128.59  Aligned_cols=75  Identities=23%  Similarity=0.218  Sum_probs=41.5

Q ss_pred             CCceEEeccCCccCceeeecCCCCCccccEEEecCCccccceeccccccccccceeeccCCCCC--CChHHHHhc-----
Q 036414          142 HLEVLKLKQNSYFERKLACVGCSSFPQLKILHLKSMLWLEEWTMGAGAMPKLESLILNPCAYLR--KLPEELWRI-----  214 (252)
Q Consensus       142 ~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~~~~~~--~~p~~l~~l-----  214 (252)
                      +|+.|++++|.+.+  +    ...+++|++|++++|. +++++.   .+++|+.|++++|...+  .+|..+..+     
T Consensus       318 ~L~~L~Ls~N~l~~--l----p~~~~~L~~L~L~~N~-l~~lp~---~l~~L~~L~L~~N~l~~l~~ip~~l~~L~~n~~  387 (454)
T 1jl5_A          318 SLEELNVSNNKLIE--L----PALPPRLERLIASFNH-LAEVPE---LPQNLKQLHVEYNPLREFPDIPESVEDLRMNSH  387 (454)
T ss_dssp             TCCEEECCSSCCSC--C----CCCCTTCCEEECCSSC-CSCCCC---CCTTCCEEECCSSCCSSCCCCCTTCCEEECCC-
T ss_pred             cCCEEECCCCcccc--c----cccCCcCCEEECCCCc-cccccc---hhhhccEEECCCCCCCcCCCChHHHHhhhhccc
Confidence            55666665555443  1    1235678888887777 676665   46788888888888766  567666666     


Q ss_pred             --------cccceeecccCC
Q 036414          215 --------KSLCKLELHWPQ  226 (252)
Q Consensus       215 --------~~L~~L~l~~~~  226 (252)
                              ++|++|++++++
T Consensus       388 ~~~i~~~~~~L~~L~ls~N~  407 (454)
T 1jl5_A          388 LAEVPELPQNLKQLHVETNP  407 (454)
T ss_dssp             --------------------
T ss_pred             ccccccccCcCCEEECCCCc
Confidence                    778888887764

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=99.62  E-value=4.8e-15  Score=131.56  Aligned_cols=193  Identities=17%  Similarity=0.083  Sum_probs=119.4

Q ss_pred             CCCCccccchHHHhhccccEEEecCCCCCCCCCcccCCCCCCcEecccCCCCC--chhhcCCCCCccEEEeeccCCcccc
Q 036414            2 PSSYIDHSSEDIWMMQKLMHLNFGSITLPAPPKNYSSSLKNLIFISALHPSSC--TPDILSRLPTVQTLRISGDLSHYHS   79 (252)
Q Consensus         2 ~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~~l~~~~~--~~~~l~~l~~L~~L~l~~~~~~~~~   79 (252)
                      .++.++.+|..+.  ++|++|++++|.+. .+|.   .+++|++|+ ++.|.+  ++.   .+++|++|++++|.   ..
T Consensus        48 s~n~L~~lp~~l~--~~L~~L~L~~N~l~-~lp~---~l~~L~~L~-Ls~N~l~~lp~---~l~~L~~L~Ls~N~---l~  114 (622)
T 3g06_A           48 GESGLTTLPDCLP--AHITTLVIPDNNLT-SLPA---LPPELRTLE-VSGNQLTSLPV---LPPGLLELSIFSNP---LT  114 (622)
T ss_dssp             CSSCCSCCCSCCC--TTCSEEEECSCCCS-CCCC---CCTTCCEEE-ECSCCCSCCCC---CCTTCCEEEECSCC---CC
T ss_pred             cCCCcCccChhhC--CCCcEEEecCCCCC-CCCC---cCCCCCEEE-cCCCcCCcCCC---CCCCCCEEECcCCc---CC
Confidence            3567778887665  68888888866654 5555   567888888 887776  343   67888888888884   44


Q ss_pred             chhHhhhccCCCCeEEeeeccchhHHHHhhccccCCCCCCceEEeeecccCCCC--chhhhc--------------CCCC
Q 036414           80 GVSKSLCELHKLECLKLANQGKMWQITRMILSEYKFPPSLTQLSLSNTELIEDP--MPTLEK--------------LPHL  143 (252)
Q Consensus        80 ~~~~~l~~l~~L~~L~l~~~~~~~~~~~l~~~~~~~~~~L~~l~l~~~~~~~~~--~~~l~~--------------~~~L  143 (252)
                      .++.   .+++|+.|++.+ +.+..    +|.  .+ ++|++|++++|.++...  +..+..              +++|
T Consensus       115 ~l~~---~l~~L~~L~L~~-N~l~~----lp~--~l-~~L~~L~Ls~N~l~~l~~~~~~L~~L~L~~N~l~~l~~~~~~L  183 (622)
T 3g06_A          115 HLPA---LPSGLCKLWIFG-NQLTS----LPV--LP-PGLQELSVSDNQLASLPALPSELCKLWAYNNQLTSLPMLPSGL  183 (622)
T ss_dssp             CCCC---CCTTCCEEECCS-SCCSC----CCC--CC-TTCCEEECCSSCCSCCCCCCTTCCEEECCSSCCSCCCCCCTTC
T ss_pred             CCCC---CCCCcCEEECCC-CCCCc----CCC--CC-CCCCEEECcCCcCCCcCCccCCCCEEECCCCCCCCCcccCCCC
Confidence            4444   567888888887 44544    442  13 77788888777766321  111211              2667


Q ss_pred             ceEEeccCCccCceeeecC--------------CCCCccccEEEecCCccccceeccccccccccceeeccCCCCCCChH
Q 036414          144 EVLKLKQNSYFERKLACVG--------------CSSFPQLKILHLKSMLWLEEWTMGAGAMPKLESLILNPCAYLRKLPE  209 (252)
Q Consensus       144 ~~L~l~~~~~~~~~~~~~~--------------~~~~~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~~~~~~~~p~  209 (252)
                      +.|++++|.+.........              ...+++|+.|++++|. ++.++   ..+++|+.|++++|... .+|.
T Consensus       184 ~~L~Ls~N~l~~l~~~~~~L~~L~L~~N~l~~l~~~~~~L~~L~Ls~N~-L~~lp---~~l~~L~~L~Ls~N~L~-~lp~  258 (622)
T 3g06_A          184 QELSVSDNQLASLPTLPSELYKLWAYNNRLTSLPALPSGLKELIVSGNR-LTSLP---VLPSELKELMVSGNRLT-SLPM  258 (622)
T ss_dssp             CEEECCSSCCSCCCCCCTTCCEEECCSSCCSSCCCCCTTCCEEECCSSC-CSCCC---CCCTTCCEEECCSSCCS-CCCC
T ss_pred             cEEECCCCCCCCCCCccchhhEEECcCCcccccCCCCCCCCEEEccCCc-cCcCC---CCCCcCcEEECCCCCCC-cCCc
Confidence            7777777665431100000              0112456666666665 55554   34566777777776543 5555


Q ss_pred             HHHhccccceeecccCC
Q 036414          210 ELWRIKSLCKLELHWPQ  226 (252)
Q Consensus       210 ~l~~l~~L~~L~l~~~~  226 (252)
                         .+++|+.|+++++.
T Consensus       259 ---~~~~L~~L~Ls~N~  272 (622)
T 3g06_A          259 ---LPSGLLSLSVYRNQ  272 (622)
T ss_dssp             ---CCTTCCEEECCSSC
T ss_pred             ---ccccCcEEeCCCCC
Confidence               46677777777663

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=99.61  E-value=2e-17  Score=142.18  Aligned_cols=60  Identities=23%  Similarity=0.127  Sum_probs=34.8

Q ss_pred             CccccEEEecCCcccccee-cccc-----ccccccceeeccCCCCC----CChHHHHhccccceeecccCC
Q 036414          166 FPQLKILHLKSMLWLEEWT-MGAG-----AMPKLESLILNPCAYLR----KLPEELWRIKSLCKLELHWPQ  226 (252)
Q Consensus       166 ~~~L~~L~l~~~~~l~~~~-~~~~-----~l~~L~~L~l~~~~~~~----~~p~~l~~l~~L~~L~l~~~~  226 (252)
                      +++|++|++++|. +++.. ..+.     ..++|+.|++++|...+    .+|..+..+++|++|++++++
T Consensus       340 ~~~L~~L~Ls~n~-i~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~N~  409 (461)
T 1z7x_W          340 NRFLLELQISNNR-LEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNC  409 (461)
T ss_dssp             CSSCCEEECCSSB-CHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCCCCCEEECCSSS
T ss_pred             CCCccEEEccCCc-cccccHHHHHHHHcCCCCceEEEECCCCCCChhhHHHHHHHHHhCCCccEEECCCCC
Confidence            4566666666665 44321 1111     14567777777776543    456666667777777777664

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=99.60  E-value=4.1e-15  Score=118.71  Aligned_cols=158  Identities=16%  Similarity=0.110  Sum_probs=106.2

Q ss_pred             CCCccccchHHHhhccccEEEecCCCCCCCCCcccCCCCCCcEecccCCCCC--chhhcCCCCCccEEEeeccCCccccc
Q 036414            3 SSYIDHSSEDIWMMQKLMHLNFGSITLPAPPKNYSSSLKNLIFISALHPSSC--TPDILSRLPTVQTLRISGDLSHYHSG   80 (252)
Q Consensus         3 ~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~~l~~~~~--~~~~l~~l~~L~~L~l~~~~~~~~~~   80 (252)
                      .+.++.++ .+..+++|++|++++|.+. .++ .+..+++|++|+ ++.+.+  .+. ++.+++|++|++++|.   ...
T Consensus        28 ~~~i~~~~-~~~~l~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~-L~~N~i~~~~~-l~~l~~L~~L~L~~N~---l~~   99 (263)
T 1xeu_A           28 KQSVTDLV-SQKELSGVQNFNGDNSNIQ-SLA-GMQFFTNLKELH-LSHNQISDLSP-LKDLTKLEELSVNRNR---LKN   99 (263)
T ss_dssp             CSCTTSEE-CHHHHTTCSEEECTTSCCC-CCT-TGGGCTTCCEEE-CCSSCCCCCGG-GTTCSSCCEEECCSSC---CSC
T ss_pred             CCCccccc-chhhcCcCcEEECcCCCcc-cch-HHhhCCCCCEEE-CCCCccCCChh-hccCCCCCEEECCCCc---cCC
Confidence            35566666 5677788888888866543 344 577778888888 777766  333 7778888888888774   333


Q ss_pred             hhHhhhccCCCCeEEeeeccchhHHHHhhccccCCCCCCceEEeeecccCCCCchhhhcCCCCceEEeccCCccCceeee
Q 036414           81 VSKSLCELHKLECLKLANQGKMWQITRMILSEYKFPPSLTQLSLSNTELIEDPMPTLEKLPHLEVLKLKQNSYFERKLAC  160 (252)
Q Consensus        81 ~~~~l~~l~~L~~L~l~~~~~~~~~~~l~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~  160 (252)
                      ++.. .. ++|+.|++++ +.+..    ++.+..+ ++|+.|++++|.++..  ..++.+++|+.|++++|.+.+.   .
T Consensus       100 l~~~-~~-~~L~~L~L~~-N~l~~----~~~l~~l-~~L~~L~Ls~N~i~~~--~~l~~l~~L~~L~L~~N~i~~~---~  166 (263)
T 1xeu_A          100 LNGI-PS-ACLSRLFLDN-NELRD----TDSLIHL-KNLEILSIRNNKLKSI--VMLGFLSKLEVLDLHGNEITNT---G  166 (263)
T ss_dssp             CTTC-CC-SSCCEEECCS-SCCSB----SGGGTTC-TTCCEEECTTSCCCBC--GGGGGCTTCCEEECTTSCCCBC---T
T ss_pred             cCcc-cc-CcccEEEccC-CccCC----ChhhcCc-ccccEEECCCCcCCCC--hHHccCCCCCEEECCCCcCcch---H
Confidence            3332 22 7788888877 55544    5566666 7888888888777643  3567777888888877776654   2


Q ss_pred             cCCCCCccccEEEecCCccccce
Q 036414          161 VGCSSFPQLKILHLKSMLWLEEW  183 (252)
Q Consensus       161 ~~~~~~~~L~~L~l~~~~~l~~~  183 (252)
                      . ...+++|+.|++++|+ +...
T Consensus       167 ~-l~~l~~L~~L~l~~N~-~~~~  187 (263)
T 1xeu_A          167 G-LTRLKKVNWIDLTGQK-CVNE  187 (263)
T ss_dssp             T-STTCCCCCEEEEEEEE-EECC
T ss_pred             H-hccCCCCCEEeCCCCc-ccCC
Confidence            3 5677778888887777 5433

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=99.60  E-value=2.8e-15  Score=133.38  Aligned_cols=183  Identities=15%  Similarity=0.074  Sum_probs=119.8

Q ss_pred             CccccchHHHhhccccEEEecCCCCCCCCCcccCCCCCCcEecccCCCCC--c-hhhcCCCCCccEEEeeccCCccccch
Q 036414            5 YIDHSSEDIWMMQKLMHLNFGSITLPAPPKNYSSSLKNLIFISALHPSSC--T-PDILSRLPTVQTLRISGDLSHYHSGV   81 (252)
Q Consensus         5 ~l~~lp~~i~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~~l~~~~~--~-~~~l~~l~~L~~L~l~~~~~~~~~~~   81 (252)
                      +++++|..+.  ..+++|++++|.+....+..|.++++|++|+ ++.|.+  + +..+.++++|++|+|++|.   ...+
T Consensus        42 ~l~~vP~~lp--~~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~-Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~---l~~l  115 (635)
T 4g8a_A           42 NFYKIPDNLP--FSTKNLDLSFNPLRHLGSYSFFSFPELQVLD-LSRCEIQTIEDGAYQSLSHLSTLILTGNP---IQSL  115 (635)
T ss_dssp             CCSSCCSSSC--TTCCEEECTTSCCCEECTTTTTTCTTCCEEE-CTTCCCCEECTTTTTTCTTCCEEECTTCC---CCEE
T ss_pred             CcCccCCCCC--cCCCEEEeeCCCCCCCCHHHHhCCCCCCEEE-CCCCcCCCcChhHhcCCCCCCEEEccCCc---CCCC
Confidence            5667776543  3678888887776655556788888888888 888776  3 3347788888888888884   3344


Q ss_pred             h-HhhhccCCCCeEEeeeccchhHHHHhhc--cccCCCCCCceEEeeecccCCC-CchhhhcCCCCceEEeccCCccCce
Q 036414           82 S-KSLCELHKLECLKLANQGKMWQITRMIL--SEYKFPPSLTQLSLSNTELIED-PMPTLEKLPHLEVLKLKQNSYFERK  157 (252)
Q Consensus        82 ~-~~l~~l~~L~~L~l~~~~~~~~~~~l~~--~~~~~~~~L~~l~l~~~~~~~~-~~~~l~~~~~L~~L~l~~~~~~~~~  157 (252)
                      + ..+.++++|++|++.+ +.+..    ++  .++.+ ++|++|++++|.+... .+..++.+++|++|++++|.+....
T Consensus       116 ~~~~f~~L~~L~~L~Ls~-N~l~~----l~~~~~~~L-~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~  189 (635)
T 4g8a_A          116 ALGAFSGLSSLQKLVAVE-TNLAS----LENFPIGHL-KTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIY  189 (635)
T ss_dssp             CGGGGTTCTTCCEEECTT-SCCCC----STTCCCTTC-TTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEEC
T ss_pred             CHHHhcCCCCCCEEECCC-CcCCC----CChhhhhcC-cccCeeccccCccccCCCchhhccchhhhhhcccCccccccc
Confidence            4 4577888888888887 45544    44  46777 8888888888877643 4566778888888888877765422


Q ss_pred             eeecCCCCCc----cccEEEecCCccccceeccccccccccceeeccCC
Q 036414          158 LACVGCSSFP----QLKILHLKSMLWLEEWTMGAGAMPKLESLILNPCA  202 (252)
Q Consensus       158 ~~~~~~~~~~----~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~~~  202 (252)
                      .. . +..++    ....++++.+. ++.++........++.+++.++.
T Consensus       190 ~~-~-l~~L~~l~~~~~~~~ls~n~-l~~i~~~~~~~~~~~~l~l~~n~  235 (635)
T 4g8a_A          190 CT-D-LRVLHQMPLLNLSLDLSLNP-MNFIQPGAFKEIRLHKLTLRNNF  235 (635)
T ss_dssp             GG-G-GHHHHTCTTCCCEEECTTCC-CCEECTTTTTTCEEEEEEEESCC
T ss_pred             cc-c-ccchhhhhhhhhhhhcccCc-ccccCcccccchhhhhhhhhccc
Confidence            11 1 11222    23356666666 55554444333445555555543

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=99.59  E-value=7e-15  Score=122.15  Aligned_cols=199  Identities=16%  Similarity=0.119  Sum_probs=120.4

Q ss_pred             HHhhccccEEEecCCCCCCCCCcccCCCCCCcEecccCCCCC--chh-hcCCCCCccEEEeeccCCccccchhH-hhhcc
Q 036414           13 IWMMQKLMHLNFGSITLPAPPKNYSSSLKNLIFISALHPSSC--TPD-ILSRLPTVQTLRISGDLSHYHSGVSK-SLCEL   88 (252)
Q Consensus        13 i~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~~l~~~~~--~~~-~l~~l~~L~~L~l~~~~~~~~~~~~~-~l~~l   88 (252)
                      ++.|.. ++++-+++.+ ..+|..+  .+++++|+ ++.+.+  ++. .+.++++|++|++++|.  ....++. .+.++
T Consensus         6 ~C~C~~-~~v~C~~~~L-t~iP~~l--~~~l~~L~-Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~--i~~~i~~~~f~~L   78 (350)
T 4ay9_X            6 ICHCSN-RVFLCQESKV-TEIPSDL--PRNAIELR-FVLTKLRVIQKGAFSGFGDLEKIEISQND--VLEVIEADVFSNL   78 (350)
T ss_dssp             SSEEET-TEEEEESTTC-CSCCTTC--CTTCSEEE-EESCCCSEECTTSSTTCTTCCEEEEECCT--TCCEECTTSBCSC
T ss_pred             ccEeeC-CEEEecCCCC-CccCcCc--CCCCCEEE-ccCCcCCCcCHHHHcCCCCCCEEECcCCC--CCCccChhHhhcc
Confidence            344443 5566664443 4677655  36899999 999887  554 47899999999999996  4455553 56788


Q ss_pred             CCCCeEEeeeccchhHHHHhhc--cccCCCCCCceEEeeecccCCCCchhhhcCCCCceEEeccCCccCceeeecCCCCC
Q 036414           89 HKLECLKLANQGKMWQITRMIL--SEYKFPPSLTQLSLSNTELIEDPMPTLEKLPHLEVLKLKQNSYFERKLACVGCSSF  166 (252)
Q Consensus        89 ~~L~~L~l~~~~~~~~~~~l~~--~~~~~~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~  166 (252)
                      ++++++....++.+..    ++  .+..+ ++|+++++++|.+....+..+....++..+++.++.......... +.+.
T Consensus        79 ~~l~~~l~~~~N~l~~----l~~~~f~~l-~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~-f~~~  152 (350)
T 4ay9_X           79 PKLHEIRIEKANNLLY----INPEAFQNL-PNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNS-FVGL  152 (350)
T ss_dssp             TTCCEEEEEEETTCCE----ECTTSBCCC-TTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTS-STTS
T ss_pred             hhhhhhhcccCCcccc----cCchhhhhc-cccccccccccccccCCchhhcccchhhhhhhccccccccccccc-hhhc
Confidence            9988866665576655    54  66778 999999999999886555555455556666664432211111111 2222


Q ss_pred             -ccccEEEecCCccccceeccccccccccceeeccCCCCCCChHH-HHhccccceeecccC
Q 036414          167 -PQLKILHLKSMLWLEEWTMGAGAMPKLESLILNPCAYLRKLPEE-LWRIKSLCKLELHWP  225 (252)
Q Consensus       167 -~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~~~~~~~~p~~-l~~l~~L~~L~l~~~  225 (252)
                       ..++.|++++|. +++++.......+|+.+.+.+++..+.+|.. +..+++|++|+++++
T Consensus       153 ~~~l~~L~L~~N~-i~~i~~~~f~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N  212 (350)
T 4ay9_X          153 SFESVILWLNKNG-IQEIHNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRT  212 (350)
T ss_dssp             BSSCEEEECCSSC-CCEECTTSSTTEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTS
T ss_pred             chhhhhhcccccc-ccCCChhhccccchhHHhhccCCcccCCCHHHhccCcccchhhcCCC
Confidence             235555565555 5555444434445555555544444445432 344555555555543

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=99.59  E-value=7.3e-15  Score=114.87  Aligned_cols=143  Identities=17%  Similarity=0.183  Sum_probs=79.9

Q ss_pred             cEEEecCCCCCCCCCcccCCCCCCcEecccCCCCC---chhhcCCCCCccEEEeeccCCccccchh-HhhhccCCCCeEE
Q 036414           20 MHLNFGSITLPAPPKNYSSSLKNLIFISALHPSSC---TPDILSRLPTVQTLRISGDLSHYHSGVS-KSLCELHKLECLK   95 (252)
Q Consensus        20 ~~L~l~~~~~~~~~~~~l~~l~~L~~L~~l~~~~~---~~~~l~~l~~L~~L~l~~~~~~~~~~~~-~~l~~l~~L~~L~   95 (252)
                      +.++.+++. ...+|..+.  ++|++|+ ++.+.+   .+..+..+++|++|++++|.  . ..++ ..+..+++|+.|+
T Consensus        22 ~~v~c~~~~-l~~ip~~~~--~~L~~L~-Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~--l-~~i~~~~~~~l~~L~~L~   94 (229)
T 3e6j_A           22 TTVDCRSKR-HASVPAGIP--TNAQILY-LHDNQITKLEPGVFDSLINLKELYLGSNQ--L-GALPVGVFDSLTQLTVLD   94 (229)
T ss_dssp             TEEECTTSC-CSSCCSCCC--TTCSEEE-CCSSCCCCCCTTTTTTCTTCCEEECCSSC--C-CCCCTTTTTTCTTCCEEE
T ss_pred             CEeEccCCC-cCccCCCCC--CCCCEEE-cCCCccCccCHHHhhCccCCcEEECCCCC--C-CCcChhhcccCCCcCEEE
Confidence            345554222 233444332  5566666 555554   24445566666666666663  2 3333 3345666666666


Q ss_pred             eeeccchhHHHHhhc--cccCCCCCCceEEeeecccCCCCchhhhcCCCCceEEeccCCccCceeeecCCCCCccccEEE
Q 036414           96 LANQGKMWQITRMIL--SEYKFPPSLTQLSLSNTELIEDPMPTLEKLPHLEVLKLKQNSYFERKLACVGCSSFPQLKILH  173 (252)
Q Consensus        96 l~~~~~~~~~~~l~~--~~~~~~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~  173 (252)
                      +++ +.+..    ++  .+..+ ++|++|++++|.+. ..|..+..+++|+.|++++|.+..... .. +..+++|+.|+
T Consensus        95 Ls~-N~l~~----l~~~~~~~l-~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~~-~~-~~~l~~L~~L~  165 (229)
T 3e6j_A           95 LGT-NQLTV----LPSAVFDRL-VHLKELFMCCNKLT-ELPRGIERLTHLTHLALDQNQLKSIPH-GA-FDRLSSLTHAY  165 (229)
T ss_dssp             CCS-SCCCC----CCTTTTTTC-TTCCEEECCSSCCC-SCCTTGGGCTTCSEEECCSSCCCCCCT-TT-TTTCTTCCEEE
T ss_pred             CCC-CcCCc----cChhHhCcc-hhhCeEeccCCccc-ccCcccccCCCCCEEECCCCcCCccCH-HH-HhCCCCCCEEE
Confidence            666 44433    33  34555 67777777777666 455556667777777776666654222 12 45667777777


Q ss_pred             ecCCc
Q 036414          174 LKSML  178 (252)
Q Consensus       174 l~~~~  178 (252)
                      +++|+
T Consensus       166 l~~N~  170 (229)
T 3e6j_A          166 LFGNP  170 (229)
T ss_dssp             CTTSC
T ss_pred             eeCCC
Confidence            77766

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.57  E-value=2.1e-17  Score=145.47  Aligned_cols=121  Identities=21%  Similarity=0.185  Sum_probs=96.8

Q ss_pred             CCCeEEeeeccchhHHHHhhccccCCCCCCceEEeeecccCCCCchhhhcCCCCceEEeccCCccCceeeecCCCCCccc
Q 036414           90 KLECLKLANQGKMWQITRMILSEYKFPPSLTQLSLSNTELIEDPMPTLEKLPHLEVLKLKQNSYFERKLACVGCSSFPQL  169 (252)
Q Consensus        90 ~L~~L~l~~~~~~~~~~~l~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L  169 (252)
                      .|+.|++++ +.+..    +|.+..+ ++|+.|++++|.++ ..|..++.+++|+.|++++|.++..  + . ++.+++|
T Consensus       442 ~L~~L~Ls~-n~l~~----lp~~~~l-~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~~l--p-~-l~~l~~L  510 (567)
T 1dce_A          442 DVRVLHLAH-KDLTV----LCHLEQL-LLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALENV--D-G-VANLPRL  510 (567)
T ss_dssp             TCSEEECTT-SCCSS----CCCGGGG-TTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCCC--G-G-GTTCSSC
T ss_pred             CceEEEecC-CCCCC----CcCcccc-ccCcEeecCccccc-ccchhhhcCCCCCEEECCCCCCCCC--c-c-cCCCCCC
Confidence            588899988 56666    7777777 89999999999888 6777889999999999998888763  3 4 7789999


Q ss_pred             cEEEecCCccccce--eccccccccccceeeccCCCCCCCh---HHHHhccccceeec
Q 036414          170 KILHLKSMLWLEEW--TMGAGAMPKLESLILNPCAYLRKLP---EELWRIKSLCKLEL  222 (252)
Q Consensus       170 ~~L~l~~~~~l~~~--~~~~~~l~~L~~L~l~~~~~~~~~p---~~l~~l~~L~~L~l  222 (252)
                      +.|++++|. ++++  |..++.+++|+.|++++|...+..|   .....+++|+.|++
T Consensus       511 ~~L~Ls~N~-l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~l~~~lp~L~~L~l  567 (567)
T 1dce_A          511 QELLLCNNR-LQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSILT  567 (567)
T ss_dssp             CEEECCSSC-CCSSSTTGGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCSEEEC
T ss_pred             cEEECCCCC-CCCCCCcHHHhcCCCCCEEEecCCcCCCCccHHHHHHHHCcccCccCC
Confidence            999999998 8877  7778889999999999988654322   23456888888863

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=99.57  E-value=1.9e-15  Score=120.68  Aligned_cols=169  Identities=19%  Similarity=0.217  Sum_probs=136.3

Q ss_pred             hhccccEEEecCCCCCCCCCcccCCCCCCcEecccCCCCC-chhhcCCCCCccEEEeeccCCccccchhHhhhccCCCCe
Q 036414           15 MMQKLMHLNFGSITLPAPPKNYSSSLKNLIFISALHPSSC-TPDILSRLPTVQTLRISGDLSHYHSGVSKSLCELHKLEC   93 (252)
Q Consensus        15 ~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~~l~~~~~-~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~   93 (252)
                      .+.++..++++.+... .++ .+..+++|+.|+ ++.+.. ..+.+..+++|++|++++|.   ...++. +..+++|++
T Consensus        17 ~l~~l~~l~l~~~~i~-~~~-~~~~l~~L~~L~-l~~n~i~~l~~l~~l~~L~~L~L~~N~---i~~~~~-l~~l~~L~~   89 (263)
T 1xeu_A           17 GLANAVKQNLGKQSVT-DLV-SQKELSGVQNFN-GDNSNIQSLAGMQFFTNLKELHLSHNQ---ISDLSP-LKDLTKLEE   89 (263)
T ss_dssp             HHHHHHHHHHTCSCTT-SEE-CHHHHTTCSEEE-CTTSCCCCCTTGGGCTTCCEEECCSSC---CCCCGG-GTTCSSCCE
T ss_pred             HHHHHHHHHhcCCCcc-ccc-chhhcCcCcEEE-CcCCCcccchHHhhCCCCCEEECCCCc---cCCChh-hccCCCCCE
Confidence            5777888888865544 344 578899999999 888877 44478889999999999995   444555 889999999


Q ss_pred             EEeeeccchhHHHHhhccccCCCCCCceEEeeecccCCCCchhhhcCCCCceEEeccCCccCceeeecCCCCCccccEEE
Q 036414           94 LKLANQGKMWQITRMILSEYKFPPSLTQLSLSNTELIEDPMPTLEKLPHLEVLKLKQNSYFERKLACVGCSSFPQLKILH  173 (252)
Q Consensus        94 L~l~~~~~~~~~~~l~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~  173 (252)
                      |++++ +.+..    ++.+..  ++|+.|++++|.++..  ..++.+++|+.|++++|.+.+..   . ...+++|+.|+
T Consensus        90 L~L~~-N~l~~----l~~~~~--~~L~~L~L~~N~l~~~--~~l~~l~~L~~L~Ls~N~i~~~~---~-l~~l~~L~~L~  156 (263)
T 1xeu_A           90 LSVNR-NRLKN----LNGIPS--ACLSRLFLDNNELRDT--DSLIHLKNLEILSIRNNKLKSIV---M-LGFLSKLEVLD  156 (263)
T ss_dssp             EECCS-SCCSC----CTTCCC--SSCCEEECCSSCCSBS--GGGTTCTTCCEEECTTSCCCBCG---G-GGGCTTCCEEE
T ss_pred             EECCC-CccCC----cCcccc--CcccEEEccCCccCCC--hhhcCcccccEEECCCCcCCCCh---H-HccCCCCCEEE
Confidence            99999 66655    554433  8999999999999843  46889999999999999887642   3 66899999999


Q ss_pred             ecCCccccceeccccccccccceeeccCCCCC
Q 036414          174 LKSMLWLEEWTMGAGAMPKLESLILNPCAYLR  205 (252)
Q Consensus       174 l~~~~~l~~~~~~~~~l~~L~~L~l~~~~~~~  205 (252)
                      +++|+ ++++ ..+..+++|+.|++++|....
T Consensus       157 L~~N~-i~~~-~~l~~l~~L~~L~l~~N~~~~  186 (263)
T 1xeu_A          157 LHGNE-ITNT-GGLTRLKKVNWIDLTGQKCVN  186 (263)
T ss_dssp             CTTSC-CCBC-TTSTTCCCCCEEEEEEEEEEC
T ss_pred             CCCCc-Ccch-HHhccCCCCCEEeCCCCcccC
Confidence            99999 8877 557889999999999988653

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=99.57  E-value=9.7e-15  Score=113.48  Aligned_cols=147  Identities=16%  Similarity=0.150  Sum_probs=108.9

Q ss_pred             cEEEecCCCCCCCCCcccCCCCCCcEecccCCCCC--c-hhhcCCCCCccEEEeeccCCccccchhHhhhccCCCCeEEe
Q 036414           20 MHLNFGSITLPAPPKNYSSSLKNLIFISALHPSSC--T-PDILSRLPTVQTLRISGDLSHYHSGVSKSLCELHKLECLKL   96 (252)
Q Consensus        20 ~~L~l~~~~~~~~~~~~l~~l~~L~~L~~l~~~~~--~-~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l   96 (252)
                      +.++.+++.+ ..+|..+.  ++++.|+ ++.+.+  + +..+..+++|+.|++++|.  .....+..+..+++|++|++
T Consensus        14 ~~v~c~~~~l-~~iP~~l~--~~l~~L~-l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~--i~~~~~~~~~~l~~L~~L~L   87 (220)
T 2v9t_B           14 NIVDCRGKGL-TEIPTNLP--ETITEIR-LEQNTIKVIPPGAFSPYKKLRRIDLSNNQ--ISELAPDAFQGLRSLNSLVL   87 (220)
T ss_dssp             TEEECTTSCC-SSCCSSCC--TTCCEEE-CCSSCCCEECTTSSTTCTTCCEEECCSSC--CCEECTTTTTTCSSCCEEEC
T ss_pred             CEEEcCCCCc-CcCCCccC--cCCCEEE-CCCCcCCCcCHhHhhCCCCCCEEECCCCc--CCCcCHHHhhCCcCCCEEEC
Confidence            5566664443 34565443  5788888 777776  3 3357778888888888886  54555777888888999988


Q ss_pred             eeccchhHHHHhhc--cccCCCCCCceEEeeecccCCCCchhhhcCCCCceEEeccCCccCceeeecCCCCCccccEEEe
Q 036414           97 ANQGKMWQITRMIL--SEYKFPPSLTQLSLSNTELIEDPMPTLEKLPHLEVLKLKQNSYFERKLACVGCSSFPQLKILHL  174 (252)
Q Consensus        97 ~~~~~~~~~~~l~~--~~~~~~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l  174 (252)
                      ++ +.+..    +|  .+..+ ++|++|++++|.+....+..+..+++|+.|++++|.+...... . +..+++|++|++
T Consensus        88 s~-N~l~~----l~~~~f~~l-~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~-~-~~~l~~L~~L~L  159 (220)
T 2v9t_B           88 YG-NKITE----LPKSLFEGL-FSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKG-T-FSPLRAIQTMHL  159 (220)
T ss_dssp             CS-SCCCC----CCTTTTTTC-TTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTT-T-TTTCTTCCEEEC
T ss_pred             CC-CcCCc----cCHhHccCC-CCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHH-H-HhCCCCCCEEEe
Confidence            88 55655    56  35667 8999999999999877788888899999999988887664332 2 567889999999


Q ss_pred             cCCcccc
Q 036414          175 KSMLWLE  181 (252)
Q Consensus       175 ~~~~~l~  181 (252)
                      ++|+ +.
T Consensus       160 ~~N~-~~  165 (220)
T 2v9t_B          160 AQNP-FI  165 (220)
T ss_dssp             CSSC-EE
T ss_pred             CCCC-cC
Confidence            9888 43

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=99.57  E-value=3.3e-15  Score=132.22  Aligned_cols=61  Identities=15%  Similarity=0.205  Sum_probs=39.0

Q ss_pred             CCccccEEEecCCccccc--eeccccccccccceeeccCCCCCC-ChHHHHhccccceeecccCC
Q 036414          165 SFPQLKILHLKSMLWLEE--WTMGAGAMPKLESLILNPCAYLRK-LPEELWRIKSLCKLELHWPQ  226 (252)
Q Consensus       165 ~~~~L~~L~l~~~~~l~~--~~~~~~~l~~L~~L~l~~~~~~~~-~p~~l~~l~~L~~L~l~~~~  226 (252)
                      .+++|++|++++|+ +++  ++.....+++|++|++++|...+. ++.....+++|++|++++|.
T Consensus       461 ~~~~L~~L~L~~n~-l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~ls~n~  524 (592)
T 3ogk_B          461 YSPNVRWMLLGYVG-ESDEGLMEFSRGCPNLQKLEMRGCCFSERAIAAAVTKLPSLRYLWVQGYR  524 (592)
T ss_dssp             SCTTCCEEEECSCC-SSHHHHHHHHTCCTTCCEEEEESCCCBHHHHHHHHHHCSSCCEEEEESCB
T ss_pred             hCccceEeeccCCC-CCHHHHHHHHhcCcccCeeeccCCCCcHHHHHHHHHhcCccCeeECcCCc
Confidence            35667777777666 543  333345677788888888774332 34445667788888887775

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=99.53  E-value=1.8e-14  Score=107.08  Aligned_cols=133  Identities=22%  Similarity=0.160  Sum_probs=88.3

Q ss_pred             CCCCccEEEeeccCCccc-cchhHhhhccCCCCeEEeeeccchhHHHHhhccccCCCCCCceEEeeecccCCCCchhhhc
Q 036414           61 RLPTVQTLRISGDLSHYH-SGVSKSLCELHKLECLKLANQGKMWQITRMILSEYKFPPSLTQLSLSNTELIEDPMPTLEK  139 (252)
Q Consensus        61 ~l~~L~~L~l~~~~~~~~-~~~~~~l~~l~~L~~L~l~~~~~~~~~~~l~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~  139 (252)
                      ..++|++|++++|.  .. ..+|..+..+++|++|++.+ +.+..    ++.+..+ ++|++|++++|.+....+..++.
T Consensus        22 ~~~~L~~L~l~~n~--l~~~~i~~~~~~l~~L~~L~l~~-n~l~~----~~~~~~l-~~L~~L~Ls~N~l~~~~~~~~~~   93 (168)
T 2ell_A           22 TPAAVRELVLDNCK--SNDGKIEGLTAEFVNLEFLSLIN-VGLIS----VSNLPKL-PKLKKLELSENRIFGGLDMLAEK   93 (168)
T ss_dssp             CTTSCSEEECCSCB--CBTTBCSSCCGGGGGCCEEEEES-SCCCC----CSSCCCC-SSCCEEEEESCCCCSCCCHHHHH
T ss_pred             CcccCCEEECCCCC--CChhhHHHHHHhCCCCCEEeCcC-CCCCC----hhhhccC-CCCCEEECcCCcCchHHHHHHhh
Confidence            34677788887774  32 35666667777777777777 44444    3455666 77778888777777556666666


Q ss_pred             CCCCceEEeccCCccCceeeecCCCCCccccEEEecCCccccceec----cccccccccceeeccCCC
Q 036414          140 LPHLEVLKLKQNSYFERKLACVGCSSFPQLKILHLKSMLWLEEWTM----GAGAMPKLESLILNPCAY  203 (252)
Q Consensus       140 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~----~~~~l~~L~~L~l~~~~~  203 (252)
                      +++|+.|++++|.+........ ...+++|++|++++|+ +..++.    .+..+++|+.|++++|..
T Consensus        94 l~~L~~L~Ls~N~l~~~~~~~~-l~~l~~L~~L~l~~N~-l~~~~~~~~~~~~~l~~L~~L~l~~n~~  159 (168)
T 2ell_A           94 LPNLTHLNLSGNKLKDISTLEP-LKKLECLKSLDLFNCE-VTNLNDYRESVFKLLPQLTYLDGYDRED  159 (168)
T ss_dssp             CTTCCEEECBSSSCCSSGGGGG-GSSCSCCCEEECCSSG-GGTSTTHHHHHHTTCSSCCEETTEETTS
T ss_pred             CCCCCEEeccCCccCcchhHHH-HhcCCCCCEEEeeCCc-CcchHHHHHHHHHhCccCcEecCCCCCh
Confidence            7777777777777655322123 5567777777777777 666554    456677777777777654

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=99.53  E-value=3.1e-14  Score=111.26  Aligned_cols=149  Identities=17%  Similarity=0.128  Sum_probs=107.3

Q ss_pred             CcEecccCCCCC--chhhcCCCCCccEEEeeccCCccccchhHhhhccCCCCeEEeeeccchhHHHHhhc--cccCCCCC
Q 036414           43 LIFISALHPSSC--TPDILSRLPTVQTLRISGDLSHYHSGVSKSLCELHKLECLKLANQGKMWQITRMIL--SEYKFPPS  118 (252)
Q Consensus        43 L~~L~~l~~~~~--~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~l~~--~~~~~~~~  118 (252)
                      -+.++ .+.+..  +|..+  .++|+.|++++|.  .....+..+..+++|++|++.+ +.+..    ++  .+..+ ++
T Consensus        21 ~~~v~-c~~~~l~~ip~~~--~~~L~~L~Ls~n~--i~~~~~~~~~~l~~L~~L~L~~-N~l~~----i~~~~~~~l-~~   89 (229)
T 3e6j_A           21 GTTVD-CRSKRHASVPAGI--PTNAQILYLHDNQ--ITKLEPGVFDSLINLKELYLGS-NQLGA----LPVGVFDSL-TQ   89 (229)
T ss_dssp             TTEEE-CTTSCCSSCCSCC--CTTCSEEECCSSC--CCCCCTTTTTTCTTCCEEECCS-SCCCC----CCTTTTTTC-TT
T ss_pred             CCEeE-ccCCCcCccCCCC--CCCCCEEEcCCCc--cCccCHHHhhCccCCcEEECCC-CCCCC----cChhhcccC-CC
Confidence            34455 444444  44444  3788899998886  4454566778888888888888 55655    55  45667 88


Q ss_pred             CceEEeeecccCCCCchhhhcCCCCceEEeccCCccCceeeecCCCCCccccEEEecCCccccceec-ccccccccccee
Q 036414          119 LTQLSLSNTELIEDPMPTLEKLPHLEVLKLKQNSYFERKLACVGCSSFPQLKILHLKSMLWLEEWTM-GAGAMPKLESLI  197 (252)
Q Consensus       119 L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~-~~~~l~~L~~L~  197 (252)
                      |++|++++|.++...+..+..+++|+.|++++|.+..  ++.. ...+++|++|++++|. ++.++. .+..+++|+.|+
T Consensus        90 L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~--lp~~-~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~  165 (229)
T 3e6j_A           90 LTVLDLGTNQLTVLPSAVFDRLVHLKELFMCCNKLTE--LPRG-IERLTHLTHLALDQNQ-LKSIPHGAFDRLSSLTHAY  165 (229)
T ss_dssp             CCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCS--CCTT-GGGCTTCSEEECCSSC-CCCCCTTTTTTCTTCCEEE
T ss_pred             cCEEECCCCcCCccChhHhCcchhhCeEeccCCcccc--cCcc-cccCCCCCEEECCCCc-CCccCHHHHhCCCCCCEEE
Confidence            8888888888886666677888888888888887764  3323 5678888888888887 777753 467788888888


Q ss_pred             eccCCCCCC
Q 036414          198 LNPCAYLRK  206 (252)
Q Consensus       198 l~~~~~~~~  206 (252)
                      +++|+....
T Consensus       166 l~~N~~~c~  174 (229)
T 3e6j_A          166 LFGNPWDCE  174 (229)
T ss_dssp             CTTSCBCTT
T ss_pred             eeCCCccCC
Confidence            888876543

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=99.53  E-value=1.4e-14  Score=120.94  Aligned_cols=114  Identities=21%  Similarity=0.258  Sum_probs=47.8

Q ss_pred             CCCCccEEEeeccCCccccchhHhhhccCCCCeEEeeeccchhHHHHhhc--cccCCCCCCceEEeeecccCCCCchhhh
Q 036414           61 RLPTVQTLRISGDLSHYHSGVSKSLCELHKLECLKLANQGKMWQITRMIL--SEYKFPPSLTQLSLSNTELIEDPMPTLE  138 (252)
Q Consensus        61 ~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~l~~--~~~~~~~~L~~l~l~~~~~~~~~~~~l~  138 (252)
                      .+++|++|++++|.  .....+..+..+++|++|++++ +.+..    ++  .+..+ ++|++|++++|.+....+..+.
T Consensus        62 ~l~~L~~L~L~~N~--i~~i~~~~~~~l~~L~~L~Ls~-N~l~~----~~~~~~~~l-~~L~~L~L~~N~i~~~~~~~~~  133 (361)
T 2xot_A           62 RLTNLHSLLLSHNH--LNFISSEAFVPVPNLRYLDLSS-NHLHT----LDEFLFSDL-QALEVLLLYNNHIVVVDRNAFE  133 (361)
T ss_dssp             CCTTCCEEECCSSC--CCEECTTTTTTCTTCCEEECCS-SCCCE----ECTTTTTTC-TTCCEEECCSSCCCEECTTTTT
T ss_pred             cccccCEEECCCCc--CCccChhhccCCCCCCEEECCC-CcCCc----CCHHHhCCC-cCCCEEECCCCcccEECHHHhC
Confidence            44455555554443  2222223344445555555544 33322    22  23344 4555555555544444444444


Q ss_pred             cCCCCceEEeccCCccCceeee-cCCCCCccccEEEecCCccccce
Q 036414          139 KLPHLEVLKLKQNSYFERKLAC-VGCSSFPQLKILHLKSMLWLEEW  183 (252)
Q Consensus       139 ~~~~L~~L~l~~~~~~~~~~~~-~~~~~~~~L~~L~l~~~~~l~~~  183 (252)
                      .+++|+.|++++|.+....... .+...+++|+.|++++|+ ++.+
T Consensus       134 ~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~-l~~l  178 (361)
T 2xot_A          134 DMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNK-LKKL  178 (361)
T ss_dssp             TCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSC-CCCC
T ss_pred             CcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCC-CCcc
Confidence            4555555555444443321110 000234455555555554 4443

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=99.53  E-value=4.7e-14  Score=117.64  Aligned_cols=168  Identities=23%  Similarity=0.206  Sum_probs=127.8

Q ss_pred             cEecccCCCCC--chhhcCCCCCccEEEeeccCCccccchhHhhh-ccCCCCeEEeeeccchhHHHHhhc--cccCCCCC
Q 036414           44 IFISALHPSSC--TPDILSRLPTVQTLRISGDLSHYHSGVSKSLC-ELHKLECLKLANQGKMWQITRMIL--SEYKFPPS  118 (252)
Q Consensus        44 ~~L~~l~~~~~--~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~-~l~~L~~L~l~~~~~~~~~~~l~~--~~~~~~~~  118 (252)
                      +.++ ...+..  +|..+.  ..++.|++++|.  .....+..+. .+++|+.|++++ +.+..    ++  .+..+ ++
T Consensus        21 ~~l~-c~~~~l~~iP~~~~--~~l~~L~Ls~N~--l~~l~~~~~~~~l~~L~~L~L~~-N~i~~----i~~~~~~~l-~~   89 (361)
T 2xot_A           21 NILS-CSKQQLPNVPQSLP--SYTALLDLSHNN--LSRLRAEWTPTRLTNLHSLLLSH-NHLNF----ISSEAFVPV-PN   89 (361)
T ss_dssp             TEEE-CCSSCCSSCCSSCC--TTCSEEECCSSC--CCEECTTSSSSCCTTCCEEECCS-SCCCE----ECTTTTTTC-TT
T ss_pred             CEEE-eCCCCcCccCccCC--CCCCEEECCCCC--CCccChhhhhhcccccCEEECCC-CcCCc----cChhhccCC-CC
Confidence            4555 555544  444443  468899999995  4333344455 899999999998 66655    44  57888 99


Q ss_pred             CceEEeeecccCCCCchhhhcCCCCceEEeccCCccCceeeecCCCCCccccEEEecCCccccceeccc----ccccccc
Q 036414          119 LTQLSLSNTELIEDPMPTLEKLPHLEVLKLKQNSYFERKLACVGCSSFPQLKILHLKSMLWLEEWTMGA----GAMPKLE  194 (252)
Q Consensus       119 L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~----~~l~~L~  194 (252)
                      |++|++++|.++...+..+..+++|+.|++++|.+..... .. +.++++|+.|++++|. ++.++...    ..+++|+
T Consensus        90 L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~-~~-~~~l~~L~~L~L~~N~-l~~l~~~~~~~~~~l~~L~  166 (361)
T 2xot_A           90 LRYLDLSSNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDR-NA-FEDMAQLQKLYLSQNQ-ISRFPVELIKDGNKLPKLM  166 (361)
T ss_dssp             CCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECT-TT-TTTCTTCCEEECCSSC-CCSCCGGGTC----CTTCC
T ss_pred             CCEEECCCCcCCcCCHHHhCCCcCCCEEECCCCcccEECH-HH-hCCcccCCEEECCCCc-CCeeCHHHhcCcccCCcCC
Confidence            9999999999987777788999999999999998865322 23 6789999999999999 88887654    5789999


Q ss_pred             ceeeccCCCCCCCh-HHHHhccc--cceeecccCC
Q 036414          195 SLILNPCAYLRKLP-EELWRIKS--LCKLELHWPQ  226 (252)
Q Consensus       195 ~L~l~~~~~~~~~p-~~l~~l~~--L~~L~l~~~~  226 (252)
                      .|++++|... .+| ..+..++.  ++.|++.+++
T Consensus       167 ~L~L~~N~l~-~l~~~~~~~l~~~~l~~l~l~~N~  200 (361)
T 2xot_A          167 LLDLSSNKLK-KLPLTDLQKLPAWVKNGLYLHNNP  200 (361)
T ss_dssp             EEECCSSCCC-CCCHHHHHHSCHHHHTTEECCSSC
T ss_pred             EEECCCCCCC-ccCHHHhhhccHhhcceEEecCCC
Confidence            9999999875 555 45677776  4889998865

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=99.52  E-value=1.2e-13  Score=107.26  Aligned_cols=129  Identities=18%  Similarity=0.227  Sum_probs=54.5

Q ss_pred             CCccEEEeeccCCccccchhHhhhccCCCCeEEeeeccchhHHHHhh-c-cccCCCCCCceEEeeecccCCCCchhhhcC
Q 036414           63 PTVQTLRISGDLSHYHSGVSKSLCELHKLECLKLANQGKMWQITRMI-L-SEYKFPPSLTQLSLSNTELIEDPMPTLEKL  140 (252)
Q Consensus        63 ~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~l~-~-~~~~~~~~L~~l~l~~~~~~~~~~~~l~~~  140 (252)
                      +++++|++++|.  .....+..+..+++|++|++++ +.+..    + | .+..+ ++|++|++++|.++...+..+..+
T Consensus        32 ~~l~~L~l~~n~--i~~i~~~~~~~l~~L~~L~Ls~-N~i~~----~~~~~~~~l-~~L~~L~Ls~N~l~~l~~~~f~~l  103 (220)
T 2v9t_B           32 ETITEIRLEQNT--IKVIPPGAFSPYKKLRRIDLSN-NQISE----LAPDAFQGL-RSLNSLVLYGNKITELPKSLFEGL  103 (220)
T ss_dssp             TTCCEEECCSSC--CCEECTTSSTTCTTCCEEECCS-SCCCE----ECTTTTTTC-SSCCEEECCSSCCCCCCTTTTTTC
T ss_pred             cCCCEEECCCCc--CCCcCHhHhhCCCCCCEEECCC-CcCCC----cCHHHhhCC-cCCCEEECCCCcCCccCHhHccCC
Confidence            344445544443  2222222344444455555444 33322    2 2 34444 444555555444443333334444


Q ss_pred             CCCceEEeccCCccCceeeecCCCCCccccEEEecCCccccceec-cccccccccceeeccCC
Q 036414          141 PHLEVLKLKQNSYFERKLACVGCSSFPQLKILHLKSMLWLEEWTM-GAGAMPKLESLILNPCA  202 (252)
Q Consensus       141 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~-~~~~l~~L~~L~l~~~~  202 (252)
                      ++|+.|++++|.+...... . +..+++|+.|++++|. ++.++. .+..+++|+.|++++|+
T Consensus       104 ~~L~~L~L~~N~l~~~~~~-~-~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~L~~N~  163 (220)
T 2v9t_B          104 FSLQLLLLNANKINCLRVD-A-FQDLHNLNLLSLYDNK-LQTIAKGTFSPLRAIQTMHLAQNP  163 (220)
T ss_dssp             TTCCEEECCSSCCCCCCTT-T-TTTCTTCCEEECCSSC-CSCCCTTTTTTCTTCCEEECCSSC
T ss_pred             CCCCEEECCCCCCCEeCHH-H-cCCCCCCCEEECCCCc-CCEECHHHHhCCCCCCEEEeCCCC
Confidence            4455555544444332111 1 3344445555554444 444322 23344444445554444

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=99.51  E-value=5.6e-14  Score=109.13  Aligned_cols=147  Identities=12%  Similarity=0.119  Sum_probs=111.6

Q ss_pred             cEEEecCCCCCCCCCcccCCCCCCcEecccCCCCC--c-hh-hcCCCCCccEEEeeccCCccccchhHhhhccCCCCeEE
Q 036414           20 MHLNFGSITLPAPPKNYSSSLKNLIFISALHPSSC--T-PD-ILSRLPTVQTLRISGDLSHYHSGVSKSLCELHKLECLK   95 (252)
Q Consensus        20 ~~L~l~~~~~~~~~~~~l~~l~~L~~L~~l~~~~~--~-~~-~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~   95 (252)
                      ++++++++.+. .+|..+.  ..+++|+ ++.+.+  . +. .++.+++|++|++++|.  .....+..+..+++|++|+
T Consensus        14 ~~l~~s~n~l~-~iP~~~~--~~~~~L~-L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~--i~~i~~~~~~~l~~L~~L~   87 (220)
T 2v70_A           14 TTVDCSNQKLN-KIPEHIP--QYTAELR-LNNNEFTVLEATGIFKKLPQLRKINFSNNK--ITDIEEGAFEGASGVNEIL   87 (220)
T ss_dssp             TEEECCSSCCS-SCCSCCC--TTCSEEE-CCSSCCCEECCCCCGGGCTTCCEEECCSSC--CCEECTTTTTTCTTCCEEE
T ss_pred             CEeEeCCCCcc-cCccCCC--CCCCEEE-cCCCcCCccCchhhhccCCCCCEEECCCCc--CCEECHHHhCCCCCCCEEE
Confidence            57888855543 4666543  3467888 888877  3 22 26788999999999985  4444445788899999999


Q ss_pred             eeeccchhHHHHhhc--cccCCCCCCceEEeeecccCCCCchhhhcCCCCceEEeccCCccCceeeecCCCCCccccEEE
Q 036414           96 LANQGKMWQITRMIL--SEYKFPPSLTQLSLSNTELIEDPMPTLEKLPHLEVLKLKQNSYFERKLACVGCSSFPQLKILH  173 (252)
Q Consensus        96 l~~~~~~~~~~~l~~--~~~~~~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~  173 (252)
                      +++ +.+..    ++  .+..+ ++|++|++++|.+....+..+..+++|+.|++++|.+...... . +..+++|++|+
T Consensus        88 Ls~-N~l~~----~~~~~~~~l-~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~-~-~~~l~~L~~L~  159 (220)
T 2v70_A           88 LTS-NRLEN----VQHKMFKGL-ESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPG-A-FDTLHSLSTLN  159 (220)
T ss_dssp             CCS-SCCCC----CCGGGGTTC-SSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTT-T-TTTCTTCCEEE
T ss_pred             CCC-CccCc----cCHhHhcCC-cCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHH-H-hcCCCCCCEEE
Confidence            998 55544    44  47777 9999999999999877788888999999999998888764332 3 67889999999


Q ss_pred             ecCCcccc
Q 036414          174 LKSMLWLE  181 (252)
Q Consensus       174 l~~~~~l~  181 (252)
                      +++|+ +.
T Consensus       160 L~~N~-l~  166 (220)
T 2v70_A          160 LLANP-FN  166 (220)
T ss_dssp             CCSCC-EE
T ss_pred             ecCcC-Cc
Confidence            99998 54

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=99.48  E-value=1.9e-14  Score=104.82  Aligned_cols=124  Identities=22%  Similarity=0.190  Sum_probs=66.0

Q ss_pred             CCCCeEEeeeccchh--HHHHhhc-cccCCCCCCceEEeeecccCCCCchhhhcCCCCceEEeccCCccCceeeecCCCC
Q 036414           89 HKLECLKLANQGKMW--QITRMIL-SEYKFPPSLTQLSLSNTELIEDPMPTLEKLPHLEVLKLKQNSYFERKLACVGCSS  165 (252)
Q Consensus        89 ~~L~~L~l~~~~~~~--~~~~l~~-~~~~~~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~  165 (252)
                      ++|+.|++.+ +.+.  .    +| .+..+ ++|++|++++|.++..  ..++.+++|+.|++++|.+...... . ...
T Consensus        17 ~~l~~L~l~~-n~l~~~~----~~~~~~~l-~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~-~-~~~   86 (149)
T 2je0_A           17 SDVKELVLDN-SRSNEGK----LEGLTDEF-EELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEV-L-AEK   86 (149)
T ss_dssp             GGCSEEECTT-CBCBTTB----CCSCCTTC-TTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHH-H-HHH
T ss_pred             ccCeEEEccC-CcCChhH----HHHHHhhc-CCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHH-H-hhh
Confidence            4455555555 2232  3    44 34444 5666666666655533  4455566666666665555442111 1 234


Q ss_pred             CccccEEEecCCcccccee--ccccccccccceeeccCCCCCCCh---HHHHhccccceeecc
Q 036414          166 FPQLKILHLKSMLWLEEWT--MGAGAMPKLESLILNPCAYLRKLP---EELWRIKSLCKLELH  223 (252)
Q Consensus       166 ~~~L~~L~l~~~~~l~~~~--~~~~~l~~L~~L~l~~~~~~~~~p---~~l~~l~~L~~L~l~  223 (252)
                      +++|++|++++|. +++++  ..++.+++|+.|++++|...+.-+   ..+..+++|++|+++
T Consensus        87 l~~L~~L~ls~N~-i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~  148 (149)
T 2je0_A           87 CPNLTHLNLSGNK-IKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGY  148 (149)
T ss_dssp             CTTCCEEECTTSC-CCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTB
T ss_pred             CCCCCEEECCCCc-CCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCC
Confidence            5666666666666 55542  445666666666666665443222   245666777776664

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=99.48  E-value=8.1e-14  Score=108.25  Aligned_cols=149  Identities=13%  Similarity=0.131  Sum_probs=112.6

Q ss_pred             cEecccCCCCC--chhhcCCCCCccEEEeeccCCccccchh-HhhhccCCCCeEEeeeccchhHHHHhhc--cccCCCCC
Q 036414           44 IFISALHPSSC--TPDILSRLPTVQTLRISGDLSHYHSGVS-KSLCELHKLECLKLANQGKMWQITRMIL--SEYKFPPS  118 (252)
Q Consensus        44 ~~L~~l~~~~~--~~~~l~~l~~L~~L~l~~~~~~~~~~~~-~~l~~l~~L~~L~l~~~~~~~~~~~l~~--~~~~~~~~  118 (252)
                      ++++ ++.+..  +|..+  ...+++|++++|.  .....+ ..+..+++|++|++.+ +.+..    ++  .+..+ ++
T Consensus        14 ~~l~-~s~n~l~~iP~~~--~~~~~~L~L~~N~--l~~~~~~~~~~~l~~L~~L~L~~-N~i~~----i~~~~~~~l-~~   82 (220)
T 2v70_A           14 TTVD-CSNQKLNKIPEHI--PQYTAELRLNNNE--FTVLEATGIFKKLPQLRKINFSN-NKITD----IEEGAFEGA-SG   82 (220)
T ss_dssp             TEEE-CCSSCCSSCCSCC--CTTCSEEECCSSC--CCEECCCCCGGGCTTCCEEECCS-SCCCE----ECTTTTTTC-TT
T ss_pred             CEeE-eCCCCcccCccCC--CCCCCEEEcCCCc--CCccCchhhhccCCCCCEEECCC-CcCCE----ECHHHhCCC-CC
Confidence            4666 666655  55544  3467899999985  333223 3477899999999988 55644    44  57777 99


Q ss_pred             CceEEeeecccCCCCchhhhcCCCCceEEeccCCccCceeeecCCCCCccccEEEecCCccccce-ecccccccccccee
Q 036414          119 LTQLSLSNTELIEDPMPTLEKLPHLEVLKLKQNSYFERKLACVGCSSFPQLKILHLKSMLWLEEW-TMGAGAMPKLESLI  197 (252)
Q Consensus       119 L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~-~~~~~~l~~L~~L~  197 (252)
                      |++|++++|.++...+..++.+++|++|++++|.+...... . +.++++|++|++++|. ++.+ +..++.+++|+.|+
T Consensus        83 L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~-~-~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~  159 (220)
T 2v70_A           83 VNEILLTSNRLENVQHKMFKGLESLKTLMLRSNRITCVGND-S-FIGLSSVRLLSLYDNQ-ITTVAPGAFDTLHSLSTLN  159 (220)
T ss_dssp             CCEEECCSSCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTT-S-STTCTTCSEEECTTSC-CCCBCTTTTTTCTTCCEEE
T ss_pred             CCEEECCCCccCccCHhHhcCCcCCCEEECCCCcCCeECHh-H-cCCCccCCEEECCCCc-CCEECHHHhcCCCCCCEEE
Confidence            99999999999877778888999999999998888764322 3 6688999999999998 7777 56678889999999


Q ss_pred             eccCCCCCC
Q 036414          198 LNPCAYLRK  206 (252)
Q Consensus       198 l~~~~~~~~  206 (252)
                      +++|+....
T Consensus       160 L~~N~l~c~  168 (220)
T 2v70_A          160 LLANPFNCN  168 (220)
T ss_dssp             CCSCCEECS
T ss_pred             ecCcCCcCC
Confidence            999886543

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=99.46  E-value=1.9e-13  Score=101.55  Aligned_cols=131  Identities=21%  Similarity=0.230  Sum_probs=86.4

Q ss_pred             hhccccEEEecCCCCC-CCCCcccCCCCCCcEecccCCCCC-chhhcCCCCCccEEEeeccCCccccchhHhhhccCCCC
Q 036414           15 MMQKLMHLNFGSITLP-APPKNYSSSLKNLIFISALHPSSC-TPDILSRLPTVQTLRISGDLSHYHSGVSKSLCELHKLE   92 (252)
Q Consensus        15 ~l~~L~~L~l~~~~~~-~~~~~~l~~l~~L~~L~~l~~~~~-~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~   92 (252)
                      ..++|++|++++|.+. ..+|..+..+++|++|+ ++.+.+ ....++.+++|++|++++|.  ....++..+..+++|+
T Consensus        22 ~~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~-l~~n~l~~~~~~~~l~~L~~L~Ls~N~--l~~~~~~~~~~l~~L~   98 (168)
T 2ell_A           22 TPAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLS-LINVGLISVSNLPKLPKLKKLELSENR--IFGGLDMLAEKLPNLT   98 (168)
T ss_dssp             CTTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEE-EESSCCCCCSSCCCCSSCCEEEEESCC--CCSCCCHHHHHCTTCC
T ss_pred             CcccCCEEECCCCCCChhhHHHHHHhCCCCCEEe-CcCCCCCChhhhccCCCCCEEECcCCc--CchHHHHHHhhCCCCC
Confidence            3467899999977765 46777778888888888 777766 23567778888888888885  3333566666677777


Q ss_pred             eEEeeeccchhHHHHhh---ccccCCCCCCceEEeeecccCCCCc---hhhhcCCCCceEEeccCCcc
Q 036414           93 CLKLANQGKMWQITRMI---LSEYKFPPSLTQLSLSNTELIEDPM---PTLEKLPHLEVLKLKQNSYF  154 (252)
Q Consensus        93 ~L~l~~~~~~~~~~~l~---~~~~~~~~~L~~l~l~~~~~~~~~~---~~l~~~~~L~~L~l~~~~~~  154 (252)
                      +|++++ +.+..    +   +.+..+ ++|++|++++|.++...+   ..+..+++|+.|++++|...
T Consensus        99 ~L~Ls~-N~l~~----~~~~~~l~~l-~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~  160 (168)
T 2ell_A           99 HLNLSG-NKLKD----ISTLEPLKKL-ECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQ  160 (168)
T ss_dssp             EEECBS-SSCCS----SGGGGGGSSC-SCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTSC
T ss_pred             EEeccC-CccCc----chhHHHHhcC-CCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCChh
Confidence            777777 34422    2   244555 667777777766664443   35566666666666655543

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=99.44  E-value=2.4e-13  Score=98.90  Aligned_cols=128  Identities=18%  Similarity=0.189  Sum_probs=101.4

Q ss_pred             hhccccEEEecCCCCC-CCCCcccCCCCCCcEecccCCCCC-chhhcCCCCCccEEEeeccCCccccchhHhhhccCCCC
Q 036414           15 MMQKLMHLNFGSITLP-APPKNYSSSLKNLIFISALHPSSC-TPDILSRLPTVQTLRISGDLSHYHSGVSKSLCELHKLE   92 (252)
Q Consensus        15 ~l~~L~~L~l~~~~~~-~~~~~~l~~l~~L~~L~~l~~~~~-~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~   92 (252)
                      ..++|++|++++|.+. ..+|..+..+++|+.|+ ++.+.. ....++.+++|++|++++|.  ....+|..+..+++|+
T Consensus        15 ~~~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~-l~~n~l~~~~~~~~l~~L~~L~Ls~n~--i~~~~~~~~~~l~~L~   91 (149)
T 2je0_A           15 TPSDVKELVLDNSRSNEGKLEGLTDEFEELEFLS-TINVGLTSIANLPKLNKLKKLELSDNR--VSGGLEVLAEKCPNLT   91 (149)
T ss_dssp             CGGGCSEEECTTCBCBTTBCCSCCTTCTTCCEEE-CTTSCCCCCTTCCCCTTCCEEECCSSC--CCSCTHHHHHHCTTCC
T ss_pred             CCccCeEEEccCCcCChhHHHHHHhhcCCCcEEE-CcCCCCCCchhhhcCCCCCEEECCCCc--ccchHHHHhhhCCCCC
Confidence            4578999999988876 57888889999999999 888877 33678889999999999996  4444787788899999


Q ss_pred             eEEeeeccchhHHHHhh-ccccCCCCCCceEEeeecccCCCCc---hhhhcCCCCceEEec
Q 036414           93 CLKLANQGKMWQITRMI-LSEYKFPPSLTQLSLSNTELIEDPM---PTLEKLPHLEVLKLK  149 (252)
Q Consensus        93 ~L~l~~~~~~~~~~~l~-~~~~~~~~~L~~l~l~~~~~~~~~~---~~l~~~~~L~~L~l~  149 (252)
                      +|++++ +.+..+.  . ..+..+ ++|++|++++|.++...+   ..++.+++|+.|+++
T Consensus        92 ~L~ls~-N~i~~~~--~~~~~~~l-~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~  148 (149)
T 2je0_A           92 HLNLSG-NKIKDLS--TIEPLKKL-ENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGY  148 (149)
T ss_dssp             EEECTT-SCCCSHH--HHGGGGGC-TTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTB
T ss_pred             EEECCC-CcCCChH--HHHHHhhC-CCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCC
Confidence            999998 4453300  1 367777 899999999998886555   467888899888874

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=99.44  E-value=1.1e-13  Score=122.41  Aligned_cols=80  Identities=8%  Similarity=0.001  Sum_probs=40.3

Q ss_pred             HhhccccEEEecCCCCCCC----CCcccCCCCCCcEecccCCCCCc-------hhhcCCCCCccEEEeeccCCccccchh
Q 036414           14 WMMQKLMHLNFGSITLPAP----PKNYSSSLKNLIFISALHPSSCT-------PDILSRLPTVQTLRISGDLSHYHSGVS   82 (252)
Q Consensus        14 ~~l~~L~~L~l~~~~~~~~----~~~~l~~l~~L~~L~~l~~~~~~-------~~~l~~l~~L~~L~l~~~~~~~~~~~~   82 (252)
                      ..+++|++|++++|.+...    ++.....+++|++|+ ++.+...       +..+..+++|++|++++|.   ...++
T Consensus       161 ~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~-L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~---~~~l~  236 (592)
T 3ogk_B          161 THCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLN-FYMTEFAKISPKDLETIARNCRSLVSVKVGDFE---ILELV  236 (592)
T ss_dssp             HHCTTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEE-CTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCB---GGGGH
T ss_pred             hhCCCCCEEECccccccCcchhHHHHHHhcCCCccEEE-eeccCCCccCHHHHHHHHhhCCCCcEEeccCcc---HHHHH
Confidence            3555566666655543222    222234455566665 5444431       1123445666666666652   33455


Q ss_pred             HhhhccCCCCeEEee
Q 036414           83 KSLCELHKLECLKLA   97 (252)
Q Consensus        83 ~~l~~l~~L~~L~l~   97 (252)
                      ..+..+++|+++++.
T Consensus       237 ~~~~~~~~L~~L~l~  251 (592)
T 3ogk_B          237 GFFKAAANLEEFCGG  251 (592)
T ss_dssp             HHHHHCTTCCEEEEC
T ss_pred             HHHhhhhHHHhhccc
Confidence            555666666666665

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.41  E-value=5.5e-15  Score=130.09  Aligned_cols=178  Identities=17%  Similarity=0.179  Sum_probs=131.4

Q ss_pred             CCCCCCcEecccCCCCC--chhhcCCCCCccEEEeeccC-----------CccccchhHhhhccCCCCeEE-eeeccchh
Q 036414           38 SSLKNLIFISALHPSSC--TPDILSRLPTVQTLRISGDL-----------SHYHSGVSKSLCELHKLECLK-LANQGKMW  103 (252)
Q Consensus        38 ~~l~~L~~L~~l~~~~~--~~~~l~~l~~L~~L~l~~~~-----------~~~~~~~~~~l~~l~~L~~L~-l~~~~~~~  103 (252)
                      ..+++|+.|+ ++.+..  +|..++.+++|++|+++++.           .......|..+..+++|+.|+ +.. +.+.
T Consensus       346 ~~~~~L~~L~-Ls~n~L~~Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l~~L~~L~~l~~-n~~~  423 (567)
T 1dce_A          346 ATDEQLFRCE-LSVEKSTVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRA-AYLD  423 (567)
T ss_dssp             STTTTSSSCC-CCHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGH-HHHH
T ss_pred             ccCccceecc-CChhhHHhhHHHHHHHHHHHHhccccchhhhhHHHHHHhcccccCCHHHHHHHHhcccCcchhh-cccc
Confidence            4566777777 777665  77778888888888775542           002344556677777777777 333 3332


Q ss_pred             HHHHh------hccccCCCCCCceEEeeecccCCCCchhhhcCCCCceEEeccCCccCceeeecCCCCCccccEEEecCC
Q 036414          104 QITRM------ILSEYKFPPSLTQLSLSNTELIEDPMPTLEKLPHLEVLKLKQNSYFERKLACVGCSSFPQLKILHLKSM  177 (252)
Q Consensus       104 ~~~~l------~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~  177 (252)
                      .+..+      +..+. . ..|+.|++++|.++. .|. ++.+++|+.|++++|.+..  ++.. ++.+++|+.|++++|
T Consensus       424 ~L~~l~l~~n~i~~l~-~-~~L~~L~Ls~n~l~~-lp~-~~~l~~L~~L~Ls~N~l~~--lp~~-~~~l~~L~~L~Ls~N  496 (567)
T 1dce_A          424 DLRSKFLLENSVLKME-Y-ADVRVLHLAHKDLTV-LCH-LEQLLLVTHLDLSHNRLRA--LPPA-LAALRCLEVLQASDN  496 (567)
T ss_dssp             HHHHHHHHHHHHHHHH-H-TTCSEEECTTSCCSS-CCC-GGGGTTCCEEECCSSCCCC--CCGG-GGGCTTCCEEECCSS
T ss_pred             hhhhhhhhcccccccC-c-cCceEEEecCCCCCC-CcC-ccccccCcEeecCcccccc--cchh-hhcCCCCCEEECCCC
Confidence            21100      11111 1 478999999999985 454 8999999999999998874  3334 779999999999999


Q ss_pred             ccccceeccccccccccceeeccCCCCCCC-hHHHHhccccceeecccCC
Q 036414          178 LWLEEWTMGAGAMPKLESLILNPCAYLRKL-PEELWRIKSLCKLELHWPQ  226 (252)
Q Consensus       178 ~~l~~~~~~~~~l~~L~~L~l~~~~~~~~~-p~~l~~l~~L~~L~l~~~~  226 (252)
                      . ++++| .++.+++|+.|++++|...... |..+..+++|+.|++++++
T Consensus       497 ~-l~~lp-~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~  544 (567)
T 1dce_A          497 A-LENVD-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNS  544 (567)
T ss_dssp             C-CCCCG-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSG
T ss_pred             C-CCCCc-ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCc
Confidence            9 88888 6889999999999999876544 8889999999999999875

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=99.41  E-value=3.8e-14  Score=125.38  Aligned_cols=87  Identities=11%  Similarity=0.120  Sum_probs=54.9

Q ss_pred             hhcCCCCceEEeccCCccCceeeecCCCCCccccEEEecCCccccce--eccccccccccceeeccCCCCCCCh-HHHHh
Q 036414          137 LEKLPHLEVLKLKQNSYFERKLACVGCSSFPQLKILHLKSMLWLEEW--TMGAGAMPKLESLILNPCAYLRKLP-EELWR  213 (252)
Q Consensus       137 l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~--~~~~~~l~~L~~L~l~~~~~~~~~p-~~l~~  213 (252)
                      +..+++|+.|++++ .+.+..+... ...+++|+.|++++|. +++.  ......+++|+.|++++|...+... .....
T Consensus       428 ~~~~~~L~~L~L~~-~l~~~~~~~l-~~~~~~L~~L~L~~~~-i~~~~~~~l~~~~~~L~~L~L~~n~~~~~~~~~~~~~  504 (594)
T 2p1m_B          428 VEHCKDLRRLSLSG-LLTDKVFEYI-GTYAKKMEMLSVAFAG-DSDLGMHHVLSGCDSLRKLEIRDCPFGDKALLANASK  504 (594)
T ss_dssp             HHHCTTCCEEECCS-SCCHHHHHHH-HHHCTTCCEEEEESCC-SSHHHHHHHHHHCTTCCEEEEESCSCCHHHHHHTGGG
T ss_pred             HhhCCCccEEeecC-cccHHHHHHH-HHhchhccEeeccCCC-CcHHHHHHHHhcCCCcCEEECcCCCCcHHHHHHHHHh
Confidence            34556666666643 3222212111 1137788888888888 5432  2223568999999999998743222 23456


Q ss_pred             ccccceeecccCC
Q 036414          214 IKSLCKLELHWPQ  226 (252)
Q Consensus       214 l~~L~~L~l~~~~  226 (252)
                      +++|++|++++|+
T Consensus       505 l~~L~~L~l~~~~  517 (594)
T 2p1m_B          505 LETMRSLWMSSCS  517 (594)
T ss_dssp             GGGSSEEEEESSC
T ss_pred             CCCCCEEeeeCCC
Confidence            8999999999997

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=99.38  E-value=3e-13  Score=101.29  Aligned_cols=133  Identities=15%  Similarity=0.097  Sum_probs=87.0

Q ss_pred             ccCCCCeEEeeeccchhHHHHhhccccCCCCCCceEEeeecccCCCCchhhhcCCCCceEEeccCCccCceeeecCCCCC
Q 036414           87 ELHKLECLKLANQGKMWQITRMILSEYKFPPSLTQLSLSNTELIEDPMPTLEKLPHLEVLKLKQNSYFERKLACVGCSSF  166 (252)
Q Consensus        87 ~l~~L~~L~l~~~~~~~~~~~l~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~  166 (252)
                      .+.+|+.|++.+ +.+..    ++.+..+.++|++|++++|.++..  ..++.+++|++|++++|.+...... . +..+
T Consensus        17 ~~~~L~~L~l~~-n~l~~----i~~~~~~~~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~-~-~~~l   87 (176)
T 1a9n_A           17 NAVRDRELDLRG-YKIPV----IENLGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEG-L-DQAL   87 (176)
T ss_dssp             CTTSCEEEECTT-SCCCS----CCCGGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSC-H-HHHC
T ss_pred             CcCCceEEEeeC-CCCch----hHHhhhcCCCCCEEECCCCCCCcc--cccccCCCCCEEECCCCcccccCcc-h-hhcC
Confidence            445566666665 33433    443444424777777777776632  4566777788888877776542211 1 2467


Q ss_pred             ccccEEEecCCccccceec--cccccccccceeeccCCCCCCChHH----HHhccccceeecccCCHHHH
Q 036414          167 PQLKILHLKSMLWLEEWTM--GAGAMPKLESLILNPCAYLRKLPEE----LWRIKSLCKLELHWPQPELR  230 (252)
Q Consensus       167 ~~L~~L~l~~~~~l~~~~~--~~~~l~~L~~L~l~~~~~~~~~p~~----l~~l~~L~~L~l~~~~~~~~  230 (252)
                      ++|++|++++|. +++++.  .++.+++|+.|++++|+.. .+|..    +..+++|+.|+++++..+..
T Consensus        88 ~~L~~L~L~~N~-i~~~~~~~~l~~l~~L~~L~l~~N~i~-~~~~~~~~~~~~l~~L~~Ld~~~n~~~~~  155 (176)
T 1a9n_A           88 PDLTELILTNNS-LVELGDLDPLASLKSLTYLCILRNPVT-NKKHYRLYVIYKVPQVRVLDFQKVKLKER  155 (176)
T ss_dssp             TTCCEEECCSCC-CCCGGGGGGGGGCTTCCEEECCSSGGG-GSTTHHHHHHHHCTTCSEETTEECCHHHH
T ss_pred             CCCCEEECCCCc-CCcchhhHhhhcCCCCCEEEecCCCCC-CcHhHHHHHHHHCCccceeCCCcCCHHHH
Confidence            788888888887 776665  5677888888888888764 45543    77888888888888875433

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=99.38  E-value=5.1e-13  Score=118.13  Aligned_cols=84  Identities=19%  Similarity=0.269  Sum_probs=43.3

Q ss_pred             CCCceEEeeecccCCCCchhhhc-CCCCceEEeccCCccCceeeecCCCCCccccEEEecCCccccce--eccccccccc
Q 036414          117 PSLTQLSLSNTELIEDPMPTLEK-LPHLEVLKLKQNSYFERKLACVGCSSFPQLKILHLKSMLWLEEW--TMGAGAMPKL  193 (252)
Q Consensus       117 ~~L~~l~l~~~~~~~~~~~~l~~-~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~--~~~~~~l~~L  193 (252)
                      ++|++|++++ .+++..+..++. +++|+.|++++|.+++...... ..++++|++|++++|+ +++.  ......+++|
T Consensus       432 ~~L~~L~L~~-~l~~~~~~~l~~~~~~L~~L~L~~~~i~~~~~~~l-~~~~~~L~~L~L~~n~-~~~~~~~~~~~~l~~L  508 (594)
T 2p1m_B          432 KDLRRLSLSG-LLTDKVFEYIGTYAKKMEMLSVAFAGDSDLGMHHV-LSGCDSLRKLEIRDCP-FGDKALLANASKLETM  508 (594)
T ss_dssp             TTCCEEECCS-SCCHHHHHHHHHHCTTCCEEEEESCCSSHHHHHHH-HHHCTTCCEEEEESCS-CCHHHHHHTGGGGGGS
T ss_pred             CCccEEeecC-cccHHHHHHHHHhchhccEeeccCCCCcHHHHHHH-HhcCCCcCEEECcCCC-CcHHHHHHHHHhCCCC
Confidence            4555555543 333233333333 6667777776666543322211 2346667777776666 4422  2233456666


Q ss_pred             cceeeccCCC
Q 036414          194 ESLILNPCAY  203 (252)
Q Consensus       194 ~~L~l~~~~~  203 (252)
                      +.|++++|+.
T Consensus       509 ~~L~l~~~~~  518 (594)
T 2p1m_B          509 RSLWMSSCSV  518 (594)
T ss_dssp             SEEEEESSCC
T ss_pred             CEEeeeCCCC
Confidence            7777766665

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=99.38  E-value=2.8e-13  Score=101.40  Aligned_cols=133  Identities=14%  Similarity=0.104  Sum_probs=97.6

Q ss_pred             cCCCCCccEEEeeccCCccccchhHhhhccC-CCCeEEeeeccchhHHHHhhccccCCCCCCceEEeeecccCCCCchhh
Q 036414           59 LSRLPTVQTLRISGDLSHYHSGVSKSLCELH-KLECLKLANQGKMWQITRMILSEYKFPPSLTQLSLSNTELIEDPMPTL  137 (252)
Q Consensus        59 l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~-~L~~L~l~~~~~~~~~~~l~~~~~~~~~~L~~l~l~~~~~~~~~~~~l  137 (252)
                      +..+++|++|++++|.   ...++. +..+. +|++|++++ +.+..    ++.+..+ ++|++|++++|.++...+..+
T Consensus        15 ~~~~~~L~~L~l~~n~---l~~i~~-~~~~~~~L~~L~Ls~-N~l~~----~~~l~~l-~~L~~L~Ls~N~l~~~~~~~~   84 (176)
T 1a9n_A           15 YTNAVRDRELDLRGYK---IPVIEN-LGATLDQFDAIDFSD-NEIRK----LDGFPLL-RRLKTLLVNNNRICRIGEGLD   84 (176)
T ss_dssp             EECTTSCEEEECTTSC---CCSCCC-GGGGTTCCSEEECCS-SCCCE----ECCCCCC-SSCCEEECCSSCCCEECSCHH
T ss_pred             cCCcCCceEEEeeCCC---CchhHH-hhhcCCCCCEEECCC-CCCCc----ccccccC-CCCCEEECCCCcccccCcchh
Confidence            3457778888888874   233433 44444 888888888 55544    5566777 899999999998885555566


Q ss_pred             hcCCCCceEEeccCCccCceeeecCCCCCccccEEEecCCccccceecc----ccccccccceeeccCCC
Q 036414          138 EKLPHLEVLKLKQNSYFERKLACVGCSSFPQLKILHLKSMLWLEEWTMG----AGAMPKLESLILNPCAY  203 (252)
Q Consensus       138 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~----~~~l~~L~~L~l~~~~~  203 (252)
                      +.+++|+.|++++|.+........ ...+++|+.|++++|+ +..++..    ++.+++|+.|++++|..
T Consensus        85 ~~l~~L~~L~L~~N~i~~~~~~~~-l~~l~~L~~L~l~~N~-i~~~~~~~~~~~~~l~~L~~Ld~~~n~~  152 (176)
T 1a9n_A           85 QALPDLTELILTNNSLVELGDLDP-LASLKSLTYLCILRNP-VTNKKHYRLYVIYKVPQVRVLDFQKVKL  152 (176)
T ss_dssp             HHCTTCCEEECCSCCCCCGGGGGG-GGGCTTCCEEECCSSG-GGGSTTHHHHHHHHCTTCSEETTEECCH
T ss_pred             hcCCCCCEEECCCCcCCcchhhHh-hhcCCCCCEEEecCCC-CCCcHhHHHHHHHHCCccceeCCCcCCH
Confidence            889999999998888755322113 5678999999999998 7777653    67889999999988864

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=99.32  E-value=6.9e-15  Score=112.40  Aligned_cols=135  Identities=21%  Similarity=0.183  Sum_probs=82.4

Q ss_pred             cchhHhhhccCCCCeEEeeeccchhHHHHhhccccCCCCCCceEEeeecccCCCCchhhhcCCCCceEEeccCCccCcee
Q 036414           79 SGVSKSLCELHKLECLKLANQGKMWQITRMILSEYKFPPSLTQLSLSNTELIEDPMPTLEKLPHLEVLKLKQNSYFERKL  158 (252)
Q Consensus        79 ~~~~~~l~~l~~L~~L~l~~~~~~~~~~~l~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~  158 (252)
                      ..++..+..+++|++|++++ +.+..    +|.+..+ ++|++|++++|.++ ..+..+..+++|+.|++++|.+.... 
T Consensus        38 ~~l~~~~~~l~~L~~L~ls~-n~l~~----l~~~~~l-~~L~~L~l~~n~l~-~l~~~~~~~~~L~~L~L~~N~l~~l~-  109 (198)
T 1ds9_A           38 EKMDATLSTLKACKHLALST-NNIEK----ISSLSGM-ENLRILSLGRNLIK-KIENLDAVADTLEELWISYNQIASLS-  109 (198)
T ss_dssp             CCCHHHHHHTTTCSEEECSE-EEESC----CCCHHHH-TTCCEEEEEEEEEC-SCSSHHHHHHHCSEEEEEEEECCCHH-
T ss_pred             hhhhHHHhcCCCCCEEECCC-CCCcc----ccccccC-CCCCEEECCCCCcc-cccchhhcCCcCCEEECcCCcCCcCC-
Confidence            33444666677777777766 44544    4555555 67777777777666 34555555667777777766665421 


Q ss_pred             eecCCCCCccccEEEecCCccccceec--cccccccccceeeccCCCCCCChH----------HHHhccccceeecccC
Q 036414          159 ACVGCSSFPQLKILHLKSMLWLEEWTM--GAGAMPKLESLILNPCAYLRKLPE----------ELWRIKSLCKLELHWP  225 (252)
Q Consensus       159 ~~~~~~~~~~L~~L~l~~~~~l~~~~~--~~~~l~~L~~L~l~~~~~~~~~p~----------~l~~l~~L~~L~l~~~  225 (252)
                        . ...+++|++|++++|. ++.++.  .+..+++|+.|++++|+..+..|.          .+..+++|++|+-..+
T Consensus       110 --~-~~~l~~L~~L~l~~N~-i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~l~~L~~Ld~~~i  184 (198)
T 1ds9_A          110 --G-IEKLVNLRVLYMSNNK-ITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLDGMPV  184 (198)
T ss_dssp             --H-HHHHHHSSEEEESEEE-CCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHHHHHCSSCSEECCGGG
T ss_pred             --c-cccCCCCCEEECCCCc-CCchhHHHHHhcCCCCCEEEecCCccccccccccchHHHHHHHHHhCCCcEEECCccc
Confidence              2 4456777777777776 665432  456677777777777765332221          2567778887774443

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=99.31  E-value=2.5e-13  Score=122.96  Aligned_cols=112  Identities=13%  Similarity=0.112  Sum_probs=69.6

Q ss_pred             CCcccCCCCCCcEecccCCCCC--chhhcCCCCCccEEEeeccCCccccchhHhhhccCCCCeEEeeeccchhHHHHhhc
Q 036414           33 PKNYSSSLKNLIFISALHPSSC--TPDILSRLPTVQTLRISGDLSHYHSGVSKSLCELHKLECLKLANQGKMWQITRMIL  110 (252)
Q Consensus        33 ~~~~l~~l~~L~~L~~l~~~~~--~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~l~~  110 (252)
                      .+..+..+..|+.|+ ++.+.+  ++..+..+++|++|+|++|.   ...+|..+..+++|++|++++ +.+..    +|
T Consensus       216 ~~~~~~~l~~L~~L~-Ls~n~l~~l~~~~~~l~~L~~L~Ls~N~---l~~lp~~~~~l~~L~~L~Ls~-N~l~~----lp  286 (727)
T 4b8c_D          216 PKDSKYDDQLWHALD-LSNLQIFNISANIFKYDFLTRLYLNGNS---LTELPAEIKNLSNLRVLDLSH-NRLTS----LP  286 (727)
T ss_dssp             ------CCCCCCEEE-CTTSCCSCCCGGGGGCCSCSCCBCTTSC---CSCCCGGGGGGTTCCEEECTT-SCCSS----CC
T ss_pred             ChhhhccCCCCcEEE-CCCCCCCCCChhhcCCCCCCEEEeeCCc---CcccChhhhCCCCCCEEeCcC-CcCCc----cC
Confidence            455566667777777 666665  55556667777777777763   336666667777777777776 44545    56


Q ss_pred             -cccCCCCCCceEEeeecccCCCCchhhhcCCCCceEEeccCCccC
Q 036414          111 -SEYKFPPSLTQLSLSNTELIEDPMPTLEKLPHLEVLKLKQNSYFE  155 (252)
Q Consensus       111 -~~~~~~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~  155 (252)
                       .+..+ ++|++|++++|.++ ..|..++.+++|+.|++++|.+.+
T Consensus       287 ~~~~~l-~~L~~L~L~~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~  330 (727)
T 4b8c_D          287 AELGSC-FQLKYFYFFDNMVT-TLPWEFGNLCNLQFLGVEGNPLEK  330 (727)
T ss_dssp             SSGGGG-TTCSEEECCSSCCC-CCCSSTTSCTTCCCEECTTSCCCS
T ss_pred             hhhcCC-CCCCEEECCCCCCC-ccChhhhcCCCccEEeCCCCccCC
Confidence             66666 77777777777665 445556677777777777666553

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=99.31  E-value=5e-12  Score=95.96  Aligned_cols=89  Identities=22%  Similarity=0.204  Sum_probs=43.6

Q ss_pred             ccCCCCCCceEEeeecccCCCCchhhhcCCCCceEEeccCCccCceeeecCCCCCccccEEEecCCccccce-ecccccc
Q 036414          112 EYKFPPSLTQLSLSNTELIEDPMPTLEKLPHLEVLKLKQNSYFERKLACVGCSSFPQLKILHLKSMLWLEEW-TMGAGAM  190 (252)
Q Consensus       112 ~~~~~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~-~~~~~~l  190 (252)
                      +..+ ++|++|++++|.++...+..++.+++|++|++++|.+...... . +.++++|++|++++|+ ++.+ +..++.+
T Consensus        50 ~~~l-~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~-~-~~~l~~L~~L~L~~N~-l~~~~~~~~~~l  125 (192)
T 1w8a_A           50 FGRL-PHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNK-M-FLGLHQLKTLNLYDNQ-ISCVMPGSFEHL  125 (192)
T ss_dssp             GGGC-TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCCCEECSS-S-STTCTTCCEEECCSSC-CCEECTTSSTTC
T ss_pred             cccC-CCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCCcCCccCHH-H-hcCCCCCCEEECCCCc-CCeeCHHHhhcC
Confidence            3444 5555555555555544445555555555555555554432211 1 3345555555555555 4433 3334455


Q ss_pred             ccccceeeccCCCC
Q 036414          191 PKLESLILNPCAYL  204 (252)
Q Consensus       191 ~~L~~L~l~~~~~~  204 (252)
                      ++|+.|++++|+..
T Consensus       126 ~~L~~L~L~~N~l~  139 (192)
T 1w8a_A          126 NSLTSLNLASNPFN  139 (192)
T ss_dssp             TTCCEEECTTCCBC
T ss_pred             CCCCEEEeCCCCcc
Confidence            55555555555443

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=99.27  E-value=1.1e-11  Score=94.26  Aligned_cols=121  Identities=21%  Similarity=0.214  Sum_probs=73.3

Q ss_pred             cEecccCCCCC--chhhcCCCCCccEEEeeccCCccccchhHhhhccCCCCeEEeeeccchhHHHHhhc--cccCCCCCC
Q 036414           44 IFISALHPSSC--TPDILSRLPTVQTLRISGDLSHYHSGVSKSLCELHKLECLKLANQGKMWQITRMIL--SEYKFPPSL  119 (252)
Q Consensus        44 ~~L~~l~~~~~--~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~l~~--~~~~~~~~L  119 (252)
                      +.++ .+.+..  +|..+  .++|++|++++|.   ...+|..+..+++|+.|++++ +.+..    ++  .+..+ ++|
T Consensus        13 ~~l~-~~~~~l~~ip~~~--~~~l~~L~L~~n~---i~~ip~~~~~l~~L~~L~Ls~-N~i~~----i~~~~f~~l-~~L   80 (193)
T 2wfh_A           13 TVVR-CSNKGLKVLPKGI--PRDVTELYLDGNQ---FTLVPKELSNYKHLTLIDLSN-NRIST----LSNQSFSNM-TQL   80 (193)
T ss_dssp             TEEE-CTTSCCSSCCSCC--CTTCCEEECCSSC---CCSCCGGGGGCTTCCEEECCS-SCCCC----CCTTTTTTC-TTC
T ss_pred             CEEE-cCCCCCCcCCCCC--CCCCCEEECCCCc---CchhHHHhhcccCCCEEECCC-CcCCE----eCHhHccCC-CCC
Confidence            3444 444443  44333  2567777777773   345566667777777777776 44433    33  45566 777


Q ss_pred             ceEEeeecccCCCCchhhhcCCCCceEEeccCCccCceeeecCCCCCccccEEEecCCc
Q 036414          120 TQLSLSNTELIEDPMPTLEKLPHLEVLKLKQNSYFERKLACVGCSSFPQLKILHLKSML  178 (252)
Q Consensus       120 ~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~  178 (252)
                      ++|++++|.++...+..+..+++|+.|++++|.+...... . +..+++|+.|++++|+
T Consensus        81 ~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~-~-~~~l~~L~~L~L~~N~  137 (193)
T 2wfh_A           81 LTLILSYNRLRCIPPRTFDGLKSLRLLSLHGNDISVVPEG-A-FNDLSALSHLAIGANP  137 (193)
T ss_dssp             CEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCCCBCCTT-T-TTTCTTCCEEECCSSC
T ss_pred             CEEECCCCccCEeCHHHhCCCCCCCEEECCCCCCCeeChh-h-hhcCccccEEEeCCCC
Confidence            7777777777666666666777777777776666542221 2 4456677777777666

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=99.27  E-value=1.3e-11  Score=93.66  Aligned_cols=122  Identities=16%  Similarity=0.157  Sum_probs=62.4

Q ss_pred             cEEEecCCCCCCCCCcccCCCCCCcEecccCCCCC--chhh--cCCCCCccEEEeeccCCccccchhHhhhccCCCCeEE
Q 036414           20 MHLNFGSITLPAPPKNYSSSLKNLIFISALHPSSC--TPDI--LSRLPTVQTLRISGDLSHYHSGVSKSLCELHKLECLK   95 (252)
Q Consensus        20 ~~L~l~~~~~~~~~~~~l~~l~~L~~L~~l~~~~~--~~~~--l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~   95 (252)
                      ++++++++.+ ..+|..+..  ++++|+ ++.+.+  .+..  ++.+++|++|++++|.  .....+..+..+++|++|+
T Consensus        11 ~~l~~s~~~l-~~ip~~~~~--~l~~L~-l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~--l~~~~~~~~~~l~~L~~L~   84 (192)
T 1w8a_A           11 TTVDCTGRGL-KEIPRDIPL--HTTELL-LNDNELGRISSDGLFGRLPHLVKLELKRNQ--LTGIEPNAFEGASHIQELQ   84 (192)
T ss_dssp             TEEECTTSCC-SSCCSCCCT--TCSEEE-CCSCCCCSBCCSCSGGGCTTCCEEECCSSC--CCCBCTTTTTTCTTCCEEE
T ss_pred             CEEEcCCCCc-CcCccCCCC--CCCEEE-CCCCcCCccCCccccccCCCCCEEECCCCC--CCCcCHhHcCCcccCCEEE
Confidence            5677775544 345554332  566666 665554  2221  5556666666666664  3333344555555555555


Q ss_pred             eeeccchhHHHHhhc--cccCCCCCCceEEeeecccCCCCchhhhcCCCCceEEeccCCc
Q 036414           96 LANQGKMWQITRMIL--SEYKFPPSLTQLSLSNTELIEDPMPTLEKLPHLEVLKLKQNSY  153 (252)
Q Consensus        96 l~~~~~~~~~~~l~~--~~~~~~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~  153 (252)
                      +++ +.+..    ++  .+..+ ++|++|++++|+++...+..++.+++|+.|++++|.+
T Consensus        85 Ls~-N~l~~----~~~~~~~~l-~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l  138 (192)
T 1w8a_A           85 LGE-NKIKE----ISNKMFLGL-HQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPF  138 (192)
T ss_dssp             CCS-CCCCE----ECSSSSTTC-TTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCB
T ss_pred             CCC-CcCCc----cCHHHhcCC-CCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCc
Confidence            555 33322    22  24444 5555555555555544444444555555555544443

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=99.26  E-value=3e-12  Score=115.94  Aligned_cols=179  Identities=15%  Similarity=0.018  Sum_probs=100.1

Q ss_pred             ccccEEEecCCCCCCCCCcccCCCCCCcEecc----cCCCCC--chhhcCCCCCccEEEeeccCCccccchhHhhhccCC
Q 036414           17 QKLMHLNFGSITLPAPPKNYSSSLKNLIFISA----LHPSSC--TPDILSRLPTVQTLRISGDLSHYHSGVSKSLCELHK   90 (252)
Q Consensus        17 ~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~~----l~~~~~--~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~   90 (252)
                      ++++.|++..+.... .+..+.....|..+..    +..+..  .+..+..+++|+.|+|++|.   ...++..+..+++
T Consensus       173 ~~~~~l~L~~n~~~~-~~~~~l~~l~Ls~~~i~~~~~~~n~~~~~~~~~~~l~~L~~L~Ls~n~---l~~l~~~~~~l~~  248 (727)
T 4b8c_D          173 PLTPKIELFANGKDE-ANQALLQHKKLSQYSIDEDDDIENRMVMPKDSKYDDQLWHALDLSNLQ---IFNISANIFKYDF  248 (727)
T ss_dssp             --------------------------------------------------CCCCCCEEECTTSC---CSCCCGGGGGCCS
T ss_pred             CccceEEeeCCCCCc-chhhHhhcCccCcccccCccccccceecChhhhccCCCCcEEECCCCC---CCCCChhhcCCCC
Confidence            456777776555433 3433333344444430    112222  34557778889999998884   4467777778888


Q ss_pred             CCeEEeeeccchhHHHHhhc-cccCCCCCCceEEeeecccCCCCchhhhcCCCCceEEeccCCccCceeeecCCCCCccc
Q 036414           91 LECLKLANQGKMWQITRMIL-SEYKFPPSLTQLSLSNTELIEDPMPTLEKLPHLEVLKLKQNSYFERKLACVGCSSFPQL  169 (252)
Q Consensus        91 L~~L~l~~~~~~~~~~~l~~-~~~~~~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L  169 (252)
                      |++|++++ +.+..    +| .+..+ ++|++|+|++|.++ ..|..++.+++|+.|++++|.+..  ++.. ++.+++|
T Consensus       249 L~~L~Ls~-N~l~~----lp~~~~~l-~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~--lp~~-~~~l~~L  318 (727)
T 4b8c_D          249 LTRLYLNG-NSLTE----LPAEIKNL-SNLRVLDLSHNRLT-SLPAELGSCFQLKYFYFFDNMVTT--LPWE-FGNLCNL  318 (727)
T ss_dssp             CSCCBCTT-SCCSC----CCGGGGGG-TTCCEEECTTSCCS-SCCSSGGGGTTCSEEECCSSCCCC--CCSS-TTSCTTC
T ss_pred             CCEEEeeC-CcCcc----cChhhhCC-CCCCEEeCcCCcCC-ccChhhcCCCCCCEEECCCCCCCc--cChh-hhcCCCc
Confidence            99999888 55556    77 77787 88999999988888 567778888889999998887753  3434 6788889


Q ss_pred             cEEEecCCccccce-eccccccc-cccceeeccCCCCCCChHH
Q 036414          170 KILHLKSMLWLEEW-TMGAGAMP-KLESLILNPCAYLRKLPEE  210 (252)
Q Consensus       170 ~~L~l~~~~~l~~~-~~~~~~l~-~L~~L~l~~~~~~~~~p~~  210 (252)
                      +.|+|++|+ ++.. +..+..+. ....+++.+|.....+|..
T Consensus       319 ~~L~L~~N~-l~~~~p~~~~~~~~~~~~l~l~~N~l~~~~p~~  360 (727)
T 4b8c_D          319 QFLGVEGNP-LEKQFLKILTEKSVTGLIFYLRDNRPEIPLPHE  360 (727)
T ss_dssp             CCEECTTSC-CCSHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC
T ss_pred             cEEeCCCCc-cCCCChHHHhhcchhhhHHhhccCcccCcCccc
Confidence            999998888 6643 43333322 1234677777766666653

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=99.24  E-value=5e-14  Score=107.59  Aligned_cols=127  Identities=23%  Similarity=0.202  Sum_probs=87.8

Q ss_pred             hhcCCCCCccEEEeeccCCccccchhHhhhccCCCCeEEeeeccchhHHHHhhc-cccCCCCCCceEEeeecccCCCCch
Q 036414           57 DILSRLPTVQTLRISGDLSHYHSGVSKSLCELHKLECLKLANQGKMWQITRMIL-SEYKFPPSLTQLSLSNTELIEDPMP  135 (252)
Q Consensus        57 ~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~l~~-~~~~~~~~L~~l~l~~~~~~~~~~~  135 (252)
                      ..++.+++|++|++++|.   ...++ .+..+++|++|++++ +.+..    +| .+..+ ++|++|++++|.++. . .
T Consensus        42 ~~~~~l~~L~~L~ls~n~---l~~l~-~~~~l~~L~~L~l~~-n~l~~----l~~~~~~~-~~L~~L~L~~N~l~~-l-~  109 (198)
T 1ds9_A           42 ATLSTLKACKHLALSTNN---IEKIS-SLSGMENLRILSLGR-NLIKK----IENLDAVA-DTLEELWISYNQIAS-L-S  109 (198)
T ss_dssp             HHHHHTTTCSEEECSEEE---ESCCC-CHHHHTTCCEEEEEE-EEECS----CSSHHHHH-HHCSEEEEEEEECCC-H-H
T ss_pred             HHHhcCCCCCEEECCCCC---Ccccc-ccccCCCCCEEECCC-CCccc----ccchhhcC-CcCCEEECcCCcCCc-C-C
Confidence            356667788888887774   33355 677788888888887 55555    56 44445 788888888888874 3 3


Q ss_pred             hhhcCCCCceEEeccCCccCceeeecCCCCCccccEEEecCCccccceec-----------ccccccccccee
Q 036414          136 TLEKLPHLEVLKLKQNSYFERKLACVGCSSFPQLKILHLKSMLWLEEWTM-----------GAGAMPKLESLI  197 (252)
Q Consensus       136 ~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~-----------~~~~l~~L~~L~  197 (252)
                      .++.+++|+.|++++|.+........ ...+++|++|++++|+ +.....           .+..+++|+.|+
T Consensus       110 ~~~~l~~L~~L~l~~N~i~~~~~~~~-l~~l~~L~~L~l~~N~-l~~~~~~~~~~~~~~~~~~~~l~~L~~Ld  180 (198)
T 1ds9_A          110 GIEKLVNLRVLYMSNNKITNWGEIDK-LAALDKLEDLLLAGNP-LYNDYKENNATSEYRIEVVKRLPNLKKLD  180 (198)
T ss_dssp             HHHHHHHSSEEEESEEECCCHHHHHH-HTTTTTCSEEEECSCH-HHHHHHTTTTHHHHHHHHHHHCSSCSEEC
T ss_pred             ccccCCCCCEEECCCCcCCchhHHHH-HhcCCCCCEEEecCCc-cccccccccchHHHHHHHHHhCCCcEEEC
Confidence            57778888888888887765322113 5578888888888887 654322           156788888876

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=99.24  E-value=2.6e-11  Score=90.66  Aligned_cols=109  Identities=25%  Similarity=0.275  Sum_probs=62.1

Q ss_pred             CCCCeEEeeeccchhHHHHhhc--cccCCCCCCceEEeeecccCCCCchhhhcCCCCceEEeccCCccCceeeecCCCCC
Q 036414           89 HKLECLKLANQGKMWQITRMIL--SEYKFPPSLTQLSLSNTELIEDPMPTLEKLPHLEVLKLKQNSYFERKLACVGCSSF  166 (252)
Q Consensus        89 ~~L~~L~l~~~~~~~~~~~l~~--~~~~~~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~  166 (252)
                      ++|+.|++.+ +.+..    ++  .+..+ ++|++|++++|.++...+..++.+++|+.|++++|.+...... . +..+
T Consensus        28 ~~l~~L~l~~-n~l~~----~~~~~~~~l-~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~-~-~~~l   99 (177)
T 2o6r_A           28 SSATRLELES-NKLQS----LPHGVFDKL-TQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQSLPNG-V-FDKL   99 (177)
T ss_dssp             TTCSEEECCS-SCCCC----CCTTTTTTC-TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTT-T-TTTC
T ss_pred             CCCcEEEeCC-CcccE----eCHHHhcCc-ccccEEECCCCcceEeChhHccCCCccCEEECCCCCccccCHH-H-hhCC
Confidence            4556666655 33333    33  34455 6666666666666654555556666666666666665532211 1 3456


Q ss_pred             ccccEEEecCCccccceecc-ccccccccceeeccCCCCCC
Q 036414          167 PQLKILHLKSMLWLEEWTMG-AGAMPKLESLILNPCAYLRK  206 (252)
Q Consensus       167 ~~L~~L~l~~~~~l~~~~~~-~~~l~~L~~L~l~~~~~~~~  206 (252)
                      ++|++|++++|. ++.++.. +..+++|+.|++++|+....
T Consensus       100 ~~L~~L~l~~N~-l~~~~~~~~~~l~~L~~L~l~~N~~~~~  139 (177)
T 2o6r_A          100 TQLKELALDTNQ-LKSVPDGIFDRLTSLQKIWLHTNPWDCS  139 (177)
T ss_dssp             TTCCEEECCSSC-CSCCCTTTTTTCTTCCEEECCSSCBCCC
T ss_pred             cccCEEECcCCc-ceEeCHHHhcCCcccCEEEecCCCeecc
Confidence            667777776666 6655443 35566677777766665443

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=99.22  E-value=5.2e-11  Score=90.38  Aligned_cols=122  Identities=17%  Similarity=0.181  Sum_probs=91.4

Q ss_pred             cEEEecCCCCCCCCCcccCCCCCCcEecccCCCCC--chhhcCCCCCccEEEeeccCCccccchhHhhhccCCCCeEEee
Q 036414           20 MHLNFGSITLPAPPKNYSSSLKNLIFISALHPSSC--TPDILSRLPTVQTLRISGDLSHYHSGVSKSLCELHKLECLKLA   97 (252)
Q Consensus        20 ~~L~l~~~~~~~~~~~~l~~l~~L~~L~~l~~~~~--~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~   97 (252)
                      ++++++++.+. .+|..+.  +++++|+ ++.+.+  ++..+..+++|+.|++++|.  .....+..+..+++|++|+++
T Consensus        13 ~~l~~~~~~l~-~ip~~~~--~~l~~L~-L~~n~i~~ip~~~~~l~~L~~L~Ls~N~--i~~i~~~~f~~l~~L~~L~Ls   86 (193)
T 2wfh_A           13 TVVRCSNKGLK-VLPKGIP--RDVTELY-LDGNQFTLVPKELSNYKHLTLIDLSNNR--ISTLSNQSFSNMTQLLTLILS   86 (193)
T ss_dssp             TEEECTTSCCS-SCCSCCC--TTCCEEE-CCSSCCCSCCGGGGGCTTCCEEECCSSC--CCCCCTTTTTTCTTCCEEECC
T ss_pred             CEEEcCCCCCC-cCCCCCC--CCCCEEE-CCCCcCchhHHHhhcccCCCEEECCCCc--CCEeCHhHccCCCCCCEEECC
Confidence            56777755443 5665443  5788888 877776  66678888888888888885  444445567888889999998


Q ss_pred             eccchhHHHHhhc--cccCCCCCCceEEeeecccCCCCchhhhcCCCCceEEeccCCc
Q 036414           98 NQGKMWQITRMIL--SEYKFPPSLTQLSLSNTELIEDPMPTLEKLPHLEVLKLKQNSY  153 (252)
Q Consensus        98 ~~~~~~~~~~l~~--~~~~~~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~  153 (252)
                      + +.+..    ++  .+..+ ++|++|++++|.++...+..+..+++|+.|++++|..
T Consensus        87 ~-N~l~~----i~~~~f~~l-~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~  138 (193)
T 2wfh_A           87 Y-NRLRC----IPPRTFDGL-KSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPL  138 (193)
T ss_dssp             S-SCCCB----CCTTTTTTC-TTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCE
T ss_pred             C-CccCE----eCHHHhCCC-CCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCCe
Confidence            8 55544    44  57777 8999999999988866666788899999999988764

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=99.18  E-value=6.8e-11  Score=88.35  Aligned_cols=125  Identities=19%  Similarity=0.206  Sum_probs=83.0

Q ss_pred             ccEEEecCCCCCCCCCcccCCCCCCcEecccCCCCC--ch-hhcCCCCCccEEEeeccCCccccchhHhhhccCCCCeEE
Q 036414           19 LMHLNFGSITLPAPPKNYSSSLKNLIFISALHPSSC--TP-DILSRLPTVQTLRISGDLSHYHSGVSKSLCELHKLECLK   95 (252)
Q Consensus        19 L~~L~l~~~~~~~~~~~~l~~l~~L~~L~~l~~~~~--~~-~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~   95 (252)
                      .+.++++++.+. .+|..+  .++|++|+ ++.+..  .+ ..++.+++|++|++++|.  .....+..+..+++|++|+
T Consensus         9 ~~~l~~~~~~l~-~~p~~~--~~~l~~L~-l~~n~l~~~~~~~~~~l~~L~~L~l~~n~--l~~~~~~~~~~l~~L~~L~   82 (177)
T 2o6r_A            9 GTEIRCNSKGLT-SVPTGI--PSSATRLE-LESNKLQSLPHGVFDKLTQLTKLSLSQNQ--IQSLPDGVFDKLTKLTILY   82 (177)
T ss_dssp             TTEEECCSSCCS-SCCTTC--CTTCSEEE-CCSSCCCCCCTTTTTTCTTCSEEECCSSC--CCCCCTTTTTTCTTCCEEE
T ss_pred             CCEEEecCCCCc-cCCCCC--CCCCcEEE-eCCCcccEeCHHHhcCcccccEEECCCCc--ceEeChhHccCCCccCEEE
Confidence            456666644433 344433  25777777 776665  33 335677888888888774  3332233457788888888


Q ss_pred             eeeccchhHHHHhhc--cccCCCCCCceEEeeecccCCCCchhhhcCCCCceEEeccCCccC
Q 036414           96 LANQGKMWQITRMIL--SEYKFPPSLTQLSLSNTELIEDPMPTLEKLPHLEVLKLKQNSYFE  155 (252)
Q Consensus        96 l~~~~~~~~~~~l~~--~~~~~~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~  155 (252)
                      +++ +.+..    ++  .+..+ ++|++|++++|.++...+..+..+++|++|++++|.+..
T Consensus        83 l~~-N~l~~----~~~~~~~~l-~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~  138 (177)
T 2o6r_A           83 LHE-NKLQS----LPNGVFDKL-TQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDC  138 (177)
T ss_dssp             CCS-SCCCC----CCTTTTTTC-TTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCC
T ss_pred             CCC-CCccc----cCHHHhhCC-cccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCeec
Confidence            887 55544    44  35666 888888888888886666666778888888888877543

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=99.08  E-value=5.1e-10  Score=91.96  Aligned_cols=195  Identities=13%  Similarity=0.058  Sum_probs=119.9

Q ss_pred             hccccEEEecCCCCCCCCCcccCCCCCCcEecccCCCCC---chhhcCCCCCccEEEeeccC-----C------------
Q 036414           16 MQKLMHLNFGSITLPAPPKNYSSSLKNLIFISALHPSSC---TPDILSRLPTVQTLRISGDL-----S------------   75 (252)
Q Consensus        16 l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~~l~~~~~---~~~~l~~l~~L~~L~l~~~~-----~------------   75 (252)
                      |++|+.+++.. ......+..|.++++|+.+. +..+..   ....+..+.++..+......     .            
T Consensus       100 ~~~L~~l~L~~-~i~~I~~~aF~~~~~L~~l~-l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~~~~  177 (329)
T 3sb4_A          100 KQTLEKVILSE-KIKNIEDAAFKGCDNLKICQ-IRKKTAPNLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFIEGEP  177 (329)
T ss_dssp             CTTCCC-CBCT-TCCEECTTTTTTCTTCCEEE-BCCSSCCEECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEEESCC
T ss_pred             cCCCcEEECCc-cccchhHHHhhcCcccceEE-cCCCCccccchhhhcCCCceEEecCcchhhhhccccccccccccccc
Confidence            78888888874 44433445577788888888 766654   23334445555555443310     0            


Q ss_pred             -------ccccchhHhh----hccCCCCeEEeeeccchhHHHHhhccccCCCCCCceEEeeecccCCCCchhhhcCCCCc
Q 036414           76 -------HYHSGVSKSL----CELHKLECLKLANQGKMWQITRMILSEYKFPPSLTQLSLSNTELIEDPMPTLEKLPHLE  144 (252)
Q Consensus        76 -------~~~~~~~~~l----~~l~~L~~L~l~~~~~~~~~~~l~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~~~~L~  144 (252)
                             .....++..+    ....+++.+.+.+.-....    +..+...+++|+.+++..|.++.....+|..|.+|+
T Consensus       178 L~~~i~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~l~~~~----~~~l~~~~~~L~~l~L~~n~i~~I~~~aF~~~~~L~  253 (329)
T 3sb4_A          178 LETTIQVGAMGKLEDEIMKAGLQPRDINFLTIEGKLDNAD----FKLIRDYMPNLVSLDISKTNATTIPDFTFAQKKYLL  253 (329)
T ss_dssp             CEEEEEECTTCCHHHHHHHTTCCGGGCSEEEEEECCCHHH----HHHHHHHCTTCCEEECTTBCCCEECTTTTTTCTTCC
T ss_pred             cceeEEecCCCcHHHHHhhcccCccccceEEEeeeecHHH----HHHHHHhcCCCeEEECCCCCcceecHhhhhCCCCCC
Confidence                   0001111111    1234555555555211111    112222138999999999888877778899999999


Q ss_pred             eEEeccCCccCceeeecCCCCCcccc-EEEecCCcccccee-ccccccccccceeeccCCCCCCChH-HHHhccccceee
Q 036414          145 VLKLKQNSYFERKLACVGCSSFPQLK-ILHLKSMLWLEEWT-MGAGAMPKLESLILNPCAYLRKLPE-ELWRIKSLCKLE  221 (252)
Q Consensus       145 ~L~l~~~~~~~~~~~~~~~~~~~~L~-~L~l~~~~~l~~~~-~~~~~l~~L~~L~l~~~~~~~~~p~-~l~~l~~L~~L~  221 (252)
                      ++.+..+ +.. ..... +.++++|+ .+.+.+ . ++.++ ..+..|++|+.+++.++... .++. .+..+++|+.+.
T Consensus       254 ~l~l~~n-i~~-I~~~a-F~~~~~L~~~l~l~~-~-l~~I~~~aF~~c~~L~~l~l~~n~i~-~I~~~aF~~~~~L~~ly  327 (329)
T 3sb4_A          254 KIKLPHN-LKT-IGQRV-FSNCGRLAGTLELPA-S-VTAIEFGAFMGCDNLRYVLATGDKIT-TLGDELFGNGVPSKLIY  327 (329)
T ss_dssp             EEECCTT-CCE-ECTTT-TTTCTTCCEEEEECT-T-CCEECTTTTTTCTTEEEEEECSSCCC-EECTTTTCTTCCCCEEE
T ss_pred             EEECCcc-cce-ehHHH-hhCChhccEEEEEcc-c-ceEEchhhhhCCccCCEEEeCCCccC-ccchhhhcCCcchhhhc
Confidence            9999776 332 22233 67899999 999987 4 77774 55788999999999887653 4443 567788888875


Q ss_pred             c
Q 036414          222 L  222 (252)
Q Consensus       222 l  222 (252)
                      .
T Consensus       328 ~  328 (329)
T 3sb4_A          328 K  328 (329)
T ss_dssp             C
T ss_pred             c
Confidence            3

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=98.95  E-value=1.8e-09  Score=80.07  Aligned_cols=85  Identities=18%  Similarity=0.175  Sum_probs=53.7

Q ss_pred             CCCceEEeeecccCCCCchhhhcCCCCceEEeccCCccCceeeecCCCCCccccEEEecCCccccceec-cccccccccc
Q 036414          117 PSLTQLSLSNTELIEDPMPTLEKLPHLEVLKLKQNSYFERKLACVGCSSFPQLKILHLKSMLWLEEWTM-GAGAMPKLES  195 (252)
Q Consensus       117 ~~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~-~~~~l~~L~~  195 (252)
                      +++++|++++|.++...+..++.+++|+.|++++|.+...... . +.++++|++|++++|+ ++.++. .++.+++|+.
T Consensus        30 ~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~-~-f~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~  106 (170)
T 3g39_A           30 TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAG-V-FDKLTQLTQLSLNDNQ-LKSIPRGAFDNLKSLTH  106 (170)
T ss_dssp             TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTT-T-TTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCE
T ss_pred             CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChh-h-ccCCCCCCEEECCCCc-cCEeCHHHhcCCCCCCE
Confidence            6667777777776665566666677777777766666542221 2 3566677777777776 666644 3566677777


Q ss_pred             eeeccCCCC
Q 036414          196 LILNPCAYL  204 (252)
Q Consensus       196 L~l~~~~~~  204 (252)
                      |++++|+..
T Consensus       107 L~L~~N~~~  115 (170)
T 3g39_A          107 IWLLNNPWD  115 (170)
T ss_dssp             EECCSSCBC
T ss_pred             EEeCCCCCC
Confidence            777776643

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=98.95  E-value=1.2e-09  Score=90.71  Aligned_cols=136  Identities=21%  Similarity=0.281  Sum_probs=61.9

Q ss_pred             hhHhhhccCCCCeEEeeeccchhHHHHhhccccCCCCCCceEEeeecccCCCCchhhh--cCCCCceEEeccC--CccCc
Q 036414           81 VSKSLCELHKLECLKLANQGKMWQITRMILSEYKFPPSLTQLSLSNTELIEDPMPTLE--KLPHLEVLKLKQN--SYFER  156 (252)
Q Consensus        81 ~~~~l~~l~~L~~L~l~~~~~~~~~~~l~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~--~~~~L~~L~l~~~--~~~~~  156 (252)
                      +...+..+++|+.|++.++..+ .    ++.+ .. ++|+.|++..|.+.......+.  .+|+|+.|+++.+  .....
T Consensus       164 L~~ll~~~P~L~~L~L~g~~~l-~----l~~~-~~-~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~  236 (362)
T 2ra8_A          164 LSPVLDAMPLLNNLKIKGTNNL-S----IGKK-PR-PNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFD  236 (362)
T ss_dssp             CHHHHHTCTTCCEEEEECCBTC-B----CCSC-BC-TTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCC
T ss_pred             HHHHHhcCCCCcEEEEeCCCCc-e----eccc-cC-CCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccc
Confidence            3344455566666666553111 1    2222 23 5666666665555433333333  4566666665321  11000


Q ss_pred             ------eeeecCCCCCccccEEEecCCccccc-e---eccccccccccceeeccCCCCCC----ChHHHHhccccceeec
Q 036414          157 ------KLACVGCSSFPQLKILHLKSMLWLEE-W---TMGAGAMPKLESLILNPCAYLRK----LPEELWRIKSLCKLEL  222 (252)
Q Consensus       157 ------~~~~~~~~~~~~L~~L~l~~~~~l~~-~---~~~~~~l~~L~~L~l~~~~~~~~----~p~~l~~l~~L~~L~l  222 (252)
                            ...+. ...+|+|+.|++.+|. +.. .   ......+++|++|+++.|...+.    ++.++.++++|++|++
T Consensus       237 ~~~~~l~~~l~-~~~~p~Lr~L~L~~~~-i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L  314 (362)
T 2ra8_A          237 GDMNVFRPLFS-KDRFPNLKWLGIVDAE-EQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINM  314 (362)
T ss_dssp             SCGGGTGGGSC-TTTCTTCCEEEEESCT-THHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEEC
T ss_pred             hhHHHHHHHHh-cCCCCCcCEEeCCCCC-CchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEEC
Confidence                  00111 2345666666666555 321 1   11113456666666665544321    2233445566666666


Q ss_pred             ccC
Q 036414          223 HWP  225 (252)
Q Consensus       223 ~~~  225 (252)
                      +.|
T Consensus       315 ~~n  317 (362)
T 2ra8_A          315 KYN  317 (362)
T ss_dssp             CSB
T ss_pred             CCC
Confidence            554

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=98.94  E-value=2.3e-09  Score=79.86  Aligned_cols=85  Identities=19%  Similarity=0.208  Sum_probs=56.0

Q ss_pred             CCCceEEeeecccCCCCchhhhcCCCCceEEeccCCccCceeeecCCCCCccccEEEecCCccccceecc-ccccccccc
Q 036414          117 PSLTQLSLSNTELIEDPMPTLEKLPHLEVLKLKQNSYFERKLACVGCSSFPQLKILHLKSMLWLEEWTMG-AGAMPKLES  195 (252)
Q Consensus       117 ~~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~-~~~l~~L~~  195 (252)
                      ++|++|++++|.+....+..++.+++|+.|++++|.+...... . +..+++|++|++++|. ++.++.. ++.+++|+.
T Consensus        33 ~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~-~-~~~l~~L~~L~L~~N~-l~~l~~~~~~~l~~L~~  109 (174)
T 2r9u_A           33 TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTG-V-FDKLTQLTQLDLNDNH-LKSIPRGAFDNLKSLTH  109 (174)
T ss_dssp             TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTT-T-TTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCSE
T ss_pred             CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChh-H-hCCcchhhEEECCCCc-cceeCHHHhccccCCCE
Confidence            6677777777777666666677777777777777766542221 2 3566777777777776 6666543 566777777


Q ss_pred             eeeccCCCC
Q 036414          196 LILNPCAYL  204 (252)
Q Consensus       196 L~l~~~~~~  204 (252)
                      |++++|+..
T Consensus       110 L~L~~N~~~  118 (174)
T 2r9u_A          110 IYLYNNPWD  118 (174)
T ss_dssp             EECCSSCBC
T ss_pred             EEeCCCCcc
Confidence            777777643

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=98.93  E-value=1e-10  Score=97.76  Aligned_cols=157  Identities=18%  Similarity=0.093  Sum_probs=93.7

Q ss_pred             CCCcEecccCCCCCch-------hhcC-CCCCccEEEeeccCCccccchhHhh-hccCCCCeEEeeeccchhHH--HHhh
Q 036414           41 KNLIFISALHPSSCTP-------DILS-RLPTVQTLRISGDLSHYHSGVSKSL-CELHKLECLKLANQGKMWQI--TRMI  109 (252)
Q Consensus        41 ~~L~~L~~l~~~~~~~-------~~l~-~l~~L~~L~l~~~~~~~~~~~~~~l-~~l~~L~~L~l~~~~~~~~~--~~l~  109 (252)
                      ++|+.|+ ++.+.+..       ..+. ..++|++|++++|.  ........+ ..+++|++|++++ +.++..  .. +
T Consensus        72 ~~L~~L~-Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~--l~~~~~~~l~~~L~~L~~L~Ls~-n~l~~~~~~~-L  146 (372)
T 3un9_A           72 SSLRQLN-LAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQ--LDPAGLRTLLPVFLRARKLGLQL-NSLGPEACKD-L  146 (372)
T ss_dssp             TTCCEEE-CTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCC--CCHHHHHHTHHHHHTEEEEECCS-SCCCHHHHHH-H
T ss_pred             hhCCEEE-ecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCC--CCHHHHHHHHHHHHhccHhhcCC-CCCCHHHHHH-H
Confidence            5677888 77777622       1122 23688888888885  333323222 3456788888887 444110  00 1


Q ss_pred             c-cc-cCCCCCCceEEeeecccCCCCc----hhhhcCCCCceEEeccCCccCce---eeecCCCCCccccEEEecCCccc
Q 036414          110 L-SE-YKFPPSLTQLSLSNTELIEDPM----PTLEKLPHLEVLKLKQNSYFERK---LACVGCSSFPQLKILHLKSMLWL  180 (252)
Q Consensus       110 ~-~~-~~~~~~L~~l~l~~~~~~~~~~----~~l~~~~~L~~L~l~~~~~~~~~---~~~~~~~~~~~L~~L~l~~~~~l  180 (252)
                      . .+ ... ++|+.|++++|.++....    ..+...++|++|++++|.+.+..   +... ....++|++|++++|. +
T Consensus       147 ~~~L~~~~-~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~-L~~~~~L~~L~Ls~N~-i  223 (372)
T 3un9_A          147 RDLLLHDQ-CQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQ-LDRNRQLQELNVAYNG-A  223 (372)
T ss_dssp             HHHHHSTT-CCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHH-GGGCSCCCEEECCSSC-C
T ss_pred             HHHHHhcC-CccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHH-HhcCCCcCeEECCCCC-C
Confidence            1 22 233 788888888887764332    33356788888888888765421   1112 3456678888888887 6


Q ss_pred             cce-----eccccccccccceeeccCCCCC
Q 036414          181 EEW-----TMGAGAMPKLESLILNPCAYLR  205 (252)
Q Consensus       181 ~~~-----~~~~~~l~~L~~L~l~~~~~~~  205 (252)
                      ++.     .......++|++|++++|....
T Consensus       224 ~~~g~~~l~~~L~~~~~L~~L~Ls~N~i~~  253 (372)
T 3un9_A          224 GDTAALALARAAREHPSLELLHLYFNELSS  253 (372)
T ss_dssp             CHHHHHHHHHHHHHCSSCCEEECTTSSCCH
T ss_pred             CHHHHHHHHHHHHhCCCCCEEeccCCCCCH
Confidence            532     2223456788888888887653

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=98.90  E-value=3.3e-09  Score=78.99  Aligned_cols=98  Identities=19%  Similarity=0.206  Sum_probs=66.3

Q ss_pred             cEEEecCCCCCCCCCcccCCCCCCcEecccCCCCC---chhhcCCCCCccEEEeeccCCccccchhH-hhhccCCCCeEE
Q 036414           20 MHLNFGSITLPAPPKNYSSSLKNLIFISALHPSSC---TPDILSRLPTVQTLRISGDLSHYHSGVSK-SLCELHKLECLK   95 (252)
Q Consensus        20 ~~L~l~~~~~~~~~~~~l~~l~~L~~L~~l~~~~~---~~~~l~~l~~L~~L~l~~~~~~~~~~~~~-~l~~l~~L~~L~   95 (252)
                      +.++++++.+ ..+|..+.  ++|++|+ ++.+.+   .+..++.+++|++|++++|.   ...++. .+..+++|++|+
T Consensus        15 ~~l~~~~n~l-~~iP~~~~--~~L~~L~-Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~---l~~i~~~~~~~l~~L~~L~   87 (174)
T 2r9u_A           15 TLVNCQNIRL-ASVPAGIP--TDKQRLW-LNNNQITKLEPGVFDHLVNLQQLYFNSNK---LTAIPTGVFDKLTQLTQLD   87 (174)
T ss_dssp             SEEECCSSCC-SSCCSCCC--TTCSEEE-CCSSCCCCCCTTTTTTCTTCCEEECCSSC---CCCCCTTTTTTCTTCCEEE
T ss_pred             cEEEeCCCCC-CccCCCcC--CCCcEEE-eCCCCccccCHHHhcCCcCCCEEECCCCC---CCccChhHhCCcchhhEEE
Confidence            5677774444 45665543  6777887 777766   34557778888888888874   334444 346778888888


Q ss_pred             eeeccchhHHHHhhc--cccCCCCCCceEEeeecccC
Q 036414           96 LANQGKMWQITRMIL--SEYKFPPSLTQLSLSNTELI  130 (252)
Q Consensus        96 l~~~~~~~~~~~l~~--~~~~~~~~L~~l~l~~~~~~  130 (252)
                      +++ +.+..    +|  .+..+ ++|++|++++|.+.
T Consensus        88 L~~-N~l~~----l~~~~~~~l-~~L~~L~L~~N~~~  118 (174)
T 2r9u_A           88 LND-NHLKS----IPRGAFDNL-KSLTHIYLYNNPWD  118 (174)
T ss_dssp             CCS-SCCCC----CCTTTTTTC-TTCSEEECCSSCBC
T ss_pred             CCC-Cccce----eCHHHhccc-cCCCEEEeCCCCcc
Confidence            877 55555    55  36667 88888888888776

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=98.88  E-value=3.9e-09  Score=78.26  Aligned_cols=101  Identities=16%  Similarity=0.141  Sum_probs=69.0

Q ss_pred             ccEEEecCCCCCCCCCcccCCCCCCcEecccCCCCC---chhhcCCCCCccEEEeeccCCccccchhHhhhccCCCCeEE
Q 036414           19 LMHLNFGSITLPAPPKNYSSSLKNLIFISALHPSSC---TPDILSRLPTVQTLRISGDLSHYHSGVSKSLCELHKLECLK   95 (252)
Q Consensus        19 L~~L~l~~~~~~~~~~~~l~~l~~L~~L~~l~~~~~---~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~   95 (252)
                      .++++++++.+. .+|..+.  ++|++|+ ++.+.+   .+..++.+++|++|++++|.  .....+..+..+++|++|+
T Consensus        11 ~~~l~~s~n~l~-~ip~~~~--~~l~~L~-L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~--l~~l~~~~f~~l~~L~~L~   84 (170)
T 3g39_A           11 GTTVDCSGKSLA-SVPTGIP--TTTQVLY-LYDNQITKLEPGVFDRLTQLTRLDLDNNQ--LTVLPAGVFDKLTQLTQLS   84 (170)
T ss_dssp             TTEEECTTSCCS-SCCSCCC--TTCSEEE-CCSSCCCCCCTTTTTTCTTCSEEECCSSC--CCCCCTTTTTTCTTCCEEE
T ss_pred             CCEEEeCCCCcC-ccCccCC--CCCcEEE-cCCCcCCccChhhhcCcccCCEEECCCCC--cCccChhhccCCCCCCEEE
Confidence            467788755543 4665443  6788888 777766   35557778888888888885  3333333457788888888


Q ss_pred             eeeccchhHHHHhhc--cccCCCCCCceEEeeecccCC
Q 036414           96 LANQGKMWQITRMIL--SEYKFPPSLTQLSLSNTELIE  131 (252)
Q Consensus        96 l~~~~~~~~~~~l~~--~~~~~~~~L~~l~l~~~~~~~  131 (252)
                      +++ +.+..    ++  .+..+ ++|++|++++|.+..
T Consensus        85 L~~-N~l~~----~~~~~~~~l-~~L~~L~L~~N~~~c  116 (170)
T 3g39_A           85 LND-NQLKS----IPRGAFDNL-KSLTHIWLLNNPWDC  116 (170)
T ss_dssp             CCS-SCCCC----CCTTTTTTC-TTCCEEECCSSCBCT
T ss_pred             CCC-CccCE----eCHHHhcCC-CCCCEEEeCCCCCCC
Confidence            887 55555    45  46677 888888888887763

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=98.88  E-value=9.6e-11  Score=97.92  Aligned_cols=159  Identities=19%  Similarity=0.224  Sum_probs=108.6

Q ss_pred             hccccEEEecCCCCCCCCCcc----cC-CCCCCcEecccCCCCCchhh----cCCCCCccEEEeeccCCccccchhHh--
Q 036414           16 MQKLMHLNFGSITLPAPPKNY----SS-SLKNLIFISALHPSSCTPDI----LSRLPTVQTLRISGDLSHYHSGVSKS--   84 (252)
Q Consensus        16 l~~L~~L~l~~~~~~~~~~~~----l~-~l~~L~~L~~l~~~~~~~~~----l~~l~~L~~L~l~~~~~~~~~~~~~~--   84 (252)
                      +++|++|++++|.+.......    +. ...+|++|+ ++.|.+....    ...+.+|++|++++|.  ........  
T Consensus        71 ~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~-Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~--l~~~~~~~L~  147 (372)
T 3un9_A           71 LSSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVN-LASCQLDPAGLRTLLPVFLRARKLGLQLNS--LGPEACKDLR  147 (372)
T ss_dssp             HTTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEE-CTTCCCCHHHHHHTHHHHHTEEEEECCSSC--CCHHHHHHHH
T ss_pred             HhhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEE-ecCCCCCHHHHHHHHHHHHhccHhhcCCCC--CCHHHHHHHH
Confidence            467999999988765432222    22 236899999 9988873322    2235689999999996  43333333  


Q ss_pred             --h-hccCCCCeEEeeeccchhH--HHHhhc-cccCCCCCCceEEeeecccCCCC----chhhhcCCCCceEEeccCCcc
Q 036414           85 --L-CELHKLECLKLANQGKMWQ--ITRMIL-SEYKFPPSLTQLSLSNTELIEDP----MPTLEKLPHLEVLKLKQNSYF  154 (252)
Q Consensus        85 --l-~~l~~L~~L~l~~~~~~~~--~~~l~~-~~~~~~~~L~~l~l~~~~~~~~~----~~~l~~~~~L~~L~l~~~~~~  154 (252)
                        + ...++|++|++++| .+..  ... ++ .+... ++|++|++++|.+++..    ...+...++|++|++++|.+.
T Consensus       148 ~~L~~~~~~L~~L~Ls~n-~l~~~~~~~-l~~~L~~~-~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~  224 (372)
T 3un9_A          148 DLLLHDQCQITTLRLSNN-PLTAAGVAV-LMEGLAGN-TSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAG  224 (372)
T ss_dssp             HHHHSTTCCCCEEECCSS-CCHHHHHHH-HHHHHHTC-SSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCC
T ss_pred             HHHHhcCCccceeeCCCC-CCChHHHHH-HHHHHhcC-CCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCC
Confidence              3 24688999999994 4421  000 33 44566 89999999999887543    345567789999999999886


Q ss_pred             Ccee---eecCCCCCccccEEEecCCccccc
Q 036414          155 ERKL---ACVGCSSFPQLKILHLKSMLWLEE  182 (252)
Q Consensus       155 ~~~~---~~~~~~~~~~L~~L~l~~~~~l~~  182 (252)
                      +...   ... ....++|++|++++|+ +++
T Consensus       225 ~~g~~~l~~~-L~~~~~L~~L~Ls~N~-i~~  253 (372)
T 3un9_A          225 DTAALALARA-AREHPSLELLHLYFNE-LSS  253 (372)
T ss_dssp             HHHHHHHHHH-HHHCSSCCEEECTTSS-CCH
T ss_pred             HHHHHHHHHH-HHhCCCCCEEeccCCC-CCH
Confidence            5321   111 3356889999999998 764

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=98.88  E-value=1.9e-09  Score=89.56  Aligned_cols=154  Identities=18%  Similarity=0.278  Sum_probs=90.6

Q ss_pred             hcCCCCCccEEEeeccCCccccchhHhhhccCCCCeEEeeeccch-hHHHHhhccc--cCCCCCCceEEeeec--ccCCC
Q 036414           58 ILSRLPTVQTLRISGDLSHYHSGVSKSLCELHKLECLKLANQGKM-WQITRMILSE--YKFPPSLTQLSLSNT--ELIED  132 (252)
Q Consensus        58 ~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~-~~~~~l~~~~--~~~~~~L~~l~l~~~--~~~~~  132 (252)
                      -+..+++|++|+++++.   ...++. + .+++|+.|.+.. +.+ .+.   +..+  ..+ ++|++|++..+  .....
T Consensus       167 ll~~~P~L~~L~L~g~~---~l~l~~-~-~~~~L~~L~L~~-~~l~~~~---l~~l~~~~l-p~L~~L~L~~~~~~~~~~  236 (362)
T 2ra8_A          167 VLDAMPLLNNLKIKGTN---NLSIGK-K-PRPNLKSLEIIS-GGLPDSV---VEDILGSDL-PNLEKLVLYVGVEDYGFD  236 (362)
T ss_dssp             HHHTCTTCCEEEEECCB---TCBCCS-C-BCTTCSEEEEEC-SBCCHHH---HHHHHHSBC-TTCCEEEEECBCGGGTCC
T ss_pred             HHhcCCCCcEEEEeCCC---Cceecc-c-cCCCCcEEEEec-CCCChHH---HHHHHHccC-CCCcEEEEeccccccccc
Confidence            34567788888887763   122332 2 377888888876 333 110   2222  356 88888887532  11111


Q ss_pred             -Cc----hhh--hcCCCCceEEeccCCccCc--eeeecCCCCCccccEEEecCCccccc-----eeccccccccccceee
Q 036414          133 -PM----PTL--EKLPHLEVLKLKQNSYFER--KLACVGCSSFPQLKILHLKSMLWLEE-----WTMGAGAMPKLESLIL  198 (252)
Q Consensus       133 -~~----~~l--~~~~~L~~L~l~~~~~~~~--~~~~~~~~~~~~L~~L~l~~~~~l~~-----~~~~~~~l~~L~~L~l  198 (252)
                       ..    ..+  ..+|+|+.|++.+|.+...  ..... .+.+|+|++|+++.|. +.+     +...+..+++|+.|++
T Consensus       237 ~~~~~l~~~l~~~~~p~Lr~L~L~~~~i~~~~~~~la~-a~~~~~L~~LdLs~n~-L~d~G~~~L~~~L~~l~~L~~L~L  314 (362)
T 2ra8_A          237 GDMNVFRPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLE-SDILPQLETMDISAGV-LTDEGARLLLDHVDKIKHLKFINM  314 (362)
T ss_dssp             SCGGGTGGGSCTTTCTTCCEEEEESCTTHHHHHHHHHH-CSSGGGCSEEECCSSC-CBHHHHHHHHTTHHHHTTCSEEEC
T ss_pred             hhHHHHHHHHhcCCCCCcCEEeCCCCCCchHHHHHHHh-CccCCCCCEEECCCCC-CChHHHHHHHhhcccCCcceEEEC
Confidence             11    112  3478999999987776532  11223 4568899999998887 664     3333457889999999


Q ss_pred             ccCCCCCCChHHHHhccc-c-ceeecccCC
Q 036414          199 NPCAYLRKLPEELWRIKS-L-CKLELHWPQ  226 (252)
Q Consensus       199 ~~~~~~~~~p~~l~~l~~-L-~~L~l~~~~  226 (252)
                      ++|...+   .+...+.. + .++++++..
T Consensus       315 ~~n~i~d---~~~~~l~~alg~~~~~~~~~  341 (362)
T 2ra8_A          315 KYNYLSD---EMKKELQKSLPMKIDVSDSQ  341 (362)
T ss_dssp             CSBBCCH---HHHHHHHHHCCSEEECCSBC
T ss_pred             CCCcCCH---HHHHHHHHHcCCEEEecCCc
Confidence            9887553   33333332 2 456666543

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=98.81  E-value=5.9e-08  Score=81.82  Aligned_cols=81  Identities=10%  Similarity=0.057  Sum_probs=38.4

Q ss_pred             CCCceEEeeecccC-----CCCchhhhcCCCCceEEeccCCccCceeeecCCCCCccccEEEecCCcccccee-cccccc
Q 036414          117 PSLTQLSLSNTELI-----EDPMPTLEKLPHLEVLKLKQNSYFERKLACVGCSSFPQLKILHLKSMLWLEEWT-MGAGAM  190 (252)
Q Consensus       117 ~~L~~l~l~~~~~~-----~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~-~~~~~l  190 (252)
                      ++|+.+.+.++...     .....+|..|++|+.+.+. +.+.. .-... +.++++|+.+.+..+  ++.+. ..+..+
T Consensus       271 ~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~-~~i~~-I~~~a-F~~c~~L~~l~lp~~--l~~I~~~aF~~~  345 (401)
T 4fdw_A          271 PELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIP-ESIRI-LGQGL-LGGNRKVTQLTIPAN--VTQINFSAFNNT  345 (401)
T ss_dssp             TTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCC-TTCCE-ECTTT-TTTCCSCCEEEECTT--CCEECTTSSSSS
T ss_pred             CCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeC-CceEE-Ehhhh-hcCCCCccEEEECcc--ccEEcHHhCCCC
Confidence            55555555554332     1233445555555555554 22211 11112 445566666666332  34442 234455


Q ss_pred             ccccceeeccCCC
Q 036414          191 PKLESLILNPCAY  203 (252)
Q Consensus       191 ~~L~~L~l~~~~~  203 (252)
                       +|+.+.+.++..
T Consensus       346 -~L~~l~l~~n~~  357 (401)
T 4fdw_A          346 -GIKEVKVEGTTP  357 (401)
T ss_dssp             -CCCEEEECCSSC
T ss_pred             -CCCEEEEcCCCC
Confidence             677777766543

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=98.79  E-value=6.1e-08  Score=81.72  Aligned_cols=200  Identities=10%  Similarity=0.110  Sum_probs=138.2

Q ss_pred             ccccch-HHHhhccccEEEecCCCCCCCCCcccCCCCCCcEecccCCCCC--chhhcCCCCCccEEEeeccCCccccchh
Q 036414            6 IDHSSE-DIWMMQKLMHLNFGSITLPAPPKNYSSSLKNLIFISALHPSSC--TPDILSRLPTVQTLRISGDLSHYHSGVS   82 (252)
Q Consensus         6 l~~lp~-~i~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~~l~~~~~--~~~~l~~l~~L~~L~l~~~~~~~~~~~~   82 (252)
                      ++.++. ++..+ +|+.+.+. +.........+.++.+|+.+. +..+..  ++.....+.+|+.+.+..+   ....-.
T Consensus       146 i~~I~~~aF~~~-~L~~i~lp-~~l~~I~~~aF~~c~~L~~l~-l~~n~l~~I~~~aF~~~~L~~l~lp~~---l~~I~~  219 (401)
T 4fdw_A          146 LKSIGDMAFFNS-TVQEIVFP-STLEQLKEDIFYYCYNLKKAD-LSKTKITKLPASTFVYAGIEEVLLPVT---LKEIGS  219 (401)
T ss_dssp             CCEECTTTTTTC-CCCEEECC-TTCCEECSSTTTTCTTCCEEE-CTTSCCSEECTTTTTTCCCSEEECCTT---CCEECT
T ss_pred             ccEECHHhcCCC-CceEEEeC-CCccEehHHHhhCcccCCeee-cCCCcceEechhhEeecccCEEEeCCc---hheehh
Confidence            777766 35554 79999998 555444556788999999999 877665  5555445789999999755   333344


Q ss_pred             HhhhccCCCCeEEeeeccchhHHHHhhc-cccCCCCCCceEEeeecccCCCCchhhhcCCCCceEEeccCCccC----ce
Q 036414           83 KSLCELHKLECLKLANQGKMWQITRMIL-SEYKFPPSLTQLSLSNTELIEDPMPTLEKLPHLEVLKLKQNSYFE----RK  157 (252)
Q Consensus        83 ~~l~~l~~L~~L~l~~~~~~~~~~~l~~-~~~~~~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~----~~  157 (252)
                      .++..+++|+.+.+..+  +..    ++ ....- .+|+.+.+.. .+......+|..|++|+.+.+.++....    ..
T Consensus       220 ~aF~~~~~L~~l~l~~~--l~~----I~~~aF~~-~~L~~i~lp~-~i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I  291 (401)
T 4fdw_A          220 QAFLKTSQLKTIEIPEN--VST----IGQEAFRE-SGITTVKLPN-GVTNIASRAFYYCPELAEVTTYGSTFNDDPEAMI  291 (401)
T ss_dssp             TTTTTCTTCCCEECCTT--CCE----ECTTTTTT-CCCSEEEEET-TCCEECTTTTTTCTTCCEEEEESSCCCCCTTCEE
T ss_pred             hHhhCCCCCCEEecCCC--ccC----cccccccc-CCccEEEeCC-CccEEChhHhhCCCCCCEEEeCCccccCCcccEE
Confidence            67788999999999763  222    33 22222 7899999954 4554567788999999999997765431    11


Q ss_pred             eeecCCCCCccccEEEecCCcccccee-ccccccccccceeeccCCCCCCCh-HHHHhccccceeecccC
Q 036414          158 LACVGCSSFPQLKILHLKSMLWLEEWT-MGAGAMPKLESLILNPCAYLRKLP-EELWRIKSLCKLELHWP  225 (252)
Q Consensus       158 ~~~~~~~~~~~L~~L~l~~~~~l~~~~-~~~~~l~~L~~L~l~~~~~~~~~p-~~l~~l~~L~~L~l~~~  225 (252)
                      .... +.++++|+.+.+.+ . ++.+. ..+..|++|+.+.+..+  ...+. ..+..+ +|+.+.+.+.
T Consensus       292 ~~~a-F~~c~~L~~l~l~~-~-i~~I~~~aF~~c~~L~~l~lp~~--l~~I~~~aF~~~-~L~~l~l~~n  355 (401)
T 4fdw_A          292 HPYC-LEGCPKLARFEIPE-S-IRILGQGLLGGNRKVTQLTIPAN--VTQINFSAFNNT-GIKEVKVEGT  355 (401)
T ss_dssp             CTTT-TTTCTTCCEECCCT-T-CCEECTTTTTTCCSCCEEEECTT--CCEECTTSSSSS-CCCEEEECCS
T ss_pred             CHHH-hhCCccCCeEEeCC-c-eEEEhhhhhcCCCCccEEEECcc--ccEEcHHhCCCC-CCCEEEEcCC
Confidence            2223 67899999999983 3 67663 44677899999999654  22333 235567 8888888653

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=98.70  E-value=1.4e-08  Score=83.22  Aligned_cols=81  Identities=12%  Similarity=0.039  Sum_probs=60.6

Q ss_pred             cCCCCceEEeccCCccCceeeecCCCCCccccEEEecCCcccccee-cccccccccc-ceeeccCCCCCCCh-HHHHhcc
Q 036414          139 KLPHLEVLKLKQNSYFERKLACVGCSSFPQLKILHLKSMLWLEEWT-MGAGAMPKLE-SLILNPCAYLRKLP-EELWRIK  215 (252)
Q Consensus       139 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~-~~~~~l~~L~-~L~l~~~~~~~~~p-~~l~~l~  215 (252)
                      .+++|+.++++.|.+... .... +.++++|+.+++.++  ++.++ ..+..|++|+ .+.+.+ .. ..++ ..+..|+
T Consensus       224 ~~~~L~~l~L~~n~i~~I-~~~a-F~~~~~L~~l~l~~n--i~~I~~~aF~~~~~L~~~l~l~~-~l-~~I~~~aF~~c~  297 (329)
T 3sb4_A          224 YMPNLVSLDISKTNATTI-PDFT-FAQKKYLLKIKLPHN--LKTIGQRVFSNCGRLAGTLELPA-SV-TAIEFGAFMGCD  297 (329)
T ss_dssp             HCTTCCEEECTTBCCCEE-CTTT-TTTCTTCCEEECCTT--CCEECTTTTTTCTTCCEEEEECT-TC-CEECTTTTTTCT
T ss_pred             hcCCCeEEECCCCCccee-cHhh-hhCCCCCCEEECCcc--cceehHHHhhCChhccEEEEEcc-cc-eEEchhhhhCCc
Confidence            489999999988776542 2223 678999999999886  67774 4467889999 999987 33 3443 4567899


Q ss_pred             ccceeecccC
Q 036414          216 SLCKLELHWP  225 (252)
Q Consensus       216 ~L~~L~l~~~  225 (252)
                      +|+.+++.+.
T Consensus       298 ~L~~l~l~~n  307 (329)
T 3sb4_A          298 NLRYVLATGD  307 (329)
T ss_dssp             TEEEEEECSS
T ss_pred             cCCEEEeCCC
Confidence            9999998543

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=98.62  E-value=3.7e-08  Score=81.26  Aligned_cols=89  Identities=18%  Similarity=0.129  Sum_probs=62.1

Q ss_pred             CccccchHHHhhccccEEEecC-CCCCCCCCcccCCCCCCcEecccCCCCC---chhhcCCCCCccEEEeeccCCccccc
Q 036414            5 YIDHSSEDIWMMQKLMHLNFGS-ITLPAPPKNYSSSLKNLIFISALHPSSC---TPDILSRLPTVQTLRISGDLSHYHSG   80 (252)
Q Consensus         5 ~l~~lp~~i~~l~~L~~L~l~~-~~~~~~~~~~l~~l~~L~~L~~l~~~~~---~~~~l~~l~~L~~L~l~~~~~~~~~~   80 (252)
                      +++.+|. +..+.+|++|++++ |.+....+..+.++++|+.|+ ++.|.+   .+..++.+++|+.|+|++|.   ...
T Consensus        20 ~l~~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~-l~~N~l~~~~~~~~~~l~~L~~L~l~~N~---l~~   94 (347)
T 2ifg_A           20 ALDSLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLT-IVKSGLRFVAPDAFHFTPRLSRLNLSFNA---LES   94 (347)
T ss_dssp             CCTTTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEE-CCSSCCCEECTTGGGSCSCCCEEECCSSC---CSC
T ss_pred             CCCccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEE-CCCCccceeCHHHhcCCcCCCEEeCCCCc---cce
Confidence            6777887 88888888888874 665555556678888888888 777776   34456778888888888884   344


Q ss_pred             hhHhhhccCCCCeEEeee
Q 036414           81 VSKSLCELHKLECLKLAN   98 (252)
Q Consensus        81 ~~~~l~~l~~L~~L~l~~   98 (252)
                      +|..+....+|+.|++.+
T Consensus        95 ~~~~~~~~~~L~~l~l~~  112 (347)
T 2ifg_A           95 LSWKTVQGLSLQELVLSG  112 (347)
T ss_dssp             CCSTTTCSCCCCEEECCS
T ss_pred             eCHHHcccCCceEEEeeC
Confidence            554433333388888877

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=98.57  E-value=1e-07  Score=78.64  Aligned_cols=103  Identities=19%  Similarity=0.149  Sum_probs=77.2

Q ss_pred             EEEeeccCCccccchhHhhhccCCCCeEEeeeccchhHHHHhhc--cccCCCCCCceEEeeecccCCCCchhhhcCCCCc
Q 036414           67 TLRISGDLSHYHSGVSKSLCELHKLECLKLANQGKMWQITRMIL--SEYKFPPSLTQLSLSNTELIEDPMPTLEKLPHLE  144 (252)
Q Consensus        67 ~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~l~~--~~~~~~~~L~~l~l~~~~~~~~~~~~l~~~~~L~  144 (252)
                      .++.+++.  ....+|. +..+++|+.|++++++.+..    ++  .+..+ ++|+.|+|++|++....+..++.+++|+
T Consensus        12 ~v~~~~~n--~l~~ip~-l~~~~~L~~L~l~~~n~l~~----~~~~~~~~l-~~L~~L~l~~N~l~~~~~~~~~~l~~L~   83 (347)
T 2ifg_A           12 GLRCTRDG--ALDSLHH-LPGAENLTELYIENQQHLQH----LELRDLRGL-GELRNLTIVKSGLRFVAPDAFHFTPRLS   83 (347)
T ss_dssp             CEECCSSC--CCTTTTT-SCSCSCCSEEECCSCSSCCE----ECGGGSCSC-CCCSEEECCSSCCCEECTTGGGSCSCCC
T ss_pred             EEEcCCCC--CCCccCC-CCCCCCeeEEEccCCCCCCC----cChhHhccc-cCCCEEECCCCccceeCHHHhcCCcCCC
Confidence            34555542  3556888 88899999999985456655    44  57788 9999999999999877788889999999


Q ss_pred             eEEeccCCccCceeeecCCCCCccccEEEecCCcccc
Q 036414          145 VLKLKQNSYFERKLACVGCSSFPQLKILHLKSMLWLE  181 (252)
Q Consensus       145 ~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~  181 (252)
                      .|+|++|.+...... . +..++ |+.|++.+|+ +.
T Consensus        84 ~L~l~~N~l~~~~~~-~-~~~~~-L~~l~l~~N~-~~  116 (347)
T 2ifg_A           84 RLNLSFNALESLSWK-T-VQGLS-LQELVLSGNP-LH  116 (347)
T ss_dssp             EEECCSSCCSCCCST-T-TCSCC-CCEEECCSSC-CC
T ss_pred             EEeCCCCccceeCHH-H-cccCC-ceEEEeeCCC-cc
Confidence            999999888753322 1 33344 9999999888 55

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=98.56  E-value=5.2e-08  Score=72.07  Aligned_cols=87  Identities=11%  Similarity=0.090  Sum_probs=60.1

Q ss_pred             CCCceEEeeecccCCCCchhhhcCCCCceEEeccCC-ccCceeeecCCCC----CccccEEEecCCccccc--eeccccc
Q 036414          117 PSLTQLSLSNTELIEDPMPTLEKLPHLEVLKLKQNS-YFERKLACVGCSS----FPQLKILHLKSMLWLEE--WTMGAGA  189 (252)
Q Consensus       117 ~~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~-~~~~~~~~~~~~~----~~~L~~L~l~~~~~l~~--~~~~~~~  189 (252)
                      ..|+.||+++|.++......+..+++|++|++++|. +++.-+..  ...    .++|++|++++|..+++  +.. +..
T Consensus        61 ~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~--L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~-L~~  137 (176)
T 3e4g_A           61 YKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLER--LSQLENLQKSMLEMEIISCGNVTDKGIIA-LHH  137 (176)
T ss_dssp             CCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHH--HHTCHHHHHHCCEEEEESCTTCCHHHHHH-GGG
T ss_pred             ceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHH--HHhcccccCCCCEEEcCCCCcCCHHHHHH-Hhc
Confidence            478888888888877777777888888888888875 44332221  222    35788888888876764  322 456


Q ss_pred             cccccceeeccCCCCCC
Q 036414          190 MPKLESLILNPCAYLRK  206 (252)
Q Consensus       190 l~~L~~L~l~~~~~~~~  206 (252)
                      +++|++|++++|+....
T Consensus       138 ~~~L~~L~L~~c~~Itd  154 (176)
T 3e4g_A          138 FRNLKYLFLSDLPGVKE  154 (176)
T ss_dssp             CTTCCEEEEESCTTCCC
T ss_pred             CCCCCEEECCCCCCCCc
Confidence            78888888888875443

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=98.29  E-value=7.7e-07  Score=65.78  Aligned_cols=85  Identities=12%  Similarity=0.118  Sum_probs=45.2

Q ss_pred             CCccEEEeeccCCccccchhHhhhccCCCCeEEeeeccchhH-HHHhhccccCC---CCCCceEEeeec-ccCCCCchhh
Q 036414           63 PTVQTLRISGDLSHYHSGVSKSLCELHKLECLKLANQGKMWQ-ITRMILSEYKF---PPSLTQLSLSNT-ELIEDPMPTL  137 (252)
Q Consensus        63 ~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~-~~~l~~~~~~~---~~~L~~l~l~~~-~~~~~~~~~l  137 (252)
                      .+|+.|++++|.  ....-...+..+++|++|++++|..+.+ .   +..+..+   +++|++|++++| ++++.....+
T Consensus        61 ~~L~~LDLs~~~--Itd~GL~~L~~~~~L~~L~L~~C~~ItD~g---L~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L  135 (176)
T 3e4g_A           61 YKIQAIDATDSC--IMSIGFDHMEGLQYVEKIRLCKCHYIEDGC---LERLSQLENLQKSMLEMEIISCGNVTDKGIIAL  135 (176)
T ss_dssp             CCEEEEEEESCC--CCGGGGGGGTTCSCCCEEEEESCTTCCHHH---HHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHG
T ss_pred             ceEeEEeCcCCC--ccHHHHHHhcCCCCCCEEEeCCCCccCHHH---HHHHHhcccccCCCCEEEcCCCCcCCHHHHHHH
Confidence            356677777665  4444444556666666666666544411 0   1122221   135666666665 3555555555


Q ss_pred             hcCCCCceEEeccCC
Q 036414          138 EKLPHLEVLKLKQNS  152 (252)
Q Consensus       138 ~~~~~L~~L~l~~~~  152 (252)
                      ..+++|++|++++|.
T Consensus       136 ~~~~~L~~L~L~~c~  150 (176)
T 3e4g_A          136 HHFRNLKYLFLSDLP  150 (176)
T ss_dssp             GGCTTCCEEEEESCT
T ss_pred             hcCCCCCEEECCCCC
Confidence            556666666665553

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=98.16  E-value=1.2e-06  Score=65.59  Aligned_cols=117  Identities=9%  Similarity=0.029  Sum_probs=60.5

Q ss_pred             hcCCCCCccEEEeecc-C--CccccchhHhhhccCCCCeEEeeeccchhH--HHHhhc-cccCCCCCCceEEeeecccCC
Q 036414           58 ILSRLPTVQTLRISGD-L--SHYHSGVSKSLCELHKLECLKLANQGKMWQ--ITRMIL-SEYKFPPSLTQLSLSNTELIE  131 (252)
Q Consensus        58 ~l~~l~~L~~L~l~~~-~--~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~--~~~l~~-~~~~~~~~L~~l~l~~~~~~~  131 (252)
                      .+...++|++|++++| .  ......+...+...++|++|++++ +.++.  ... +. .+... ++|++|++++|.+++
T Consensus        31 ~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~-n~i~~~g~~~-l~~~L~~n-~~L~~L~L~~N~i~~  107 (185)
T 1io0_A           31 IQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVG-TRSNDPVAFA-LAEMLKVN-NTLKSLNVESNFISG  107 (185)
T ss_dssp             HHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTT-SCCCHHHHHH-HHHHHHHC-SSCCEEECCSSCCCH
T ss_pred             HHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcC-CCCChHHHHH-HHHHHHhC-CCcCEEECcCCcCCH
Confidence            3455666666666666 4  111223344455556677777766 33310  000 12 33333 667777777776654


Q ss_pred             CC----chhhhcCCCCceEEe--ccCCccCce---eeecCCCCCccccEEEecCCc
Q 036414          132 DP----MPTLEKLPHLEVLKL--KQNSYFERK---LACVGCSSFPQLKILHLKSML  178 (252)
Q Consensus       132 ~~----~~~l~~~~~L~~L~l--~~~~~~~~~---~~~~~~~~~~~L~~L~l~~~~  178 (252)
                      ..    ...+...++|++|++  ++|.+....   +... ....+.|++|++++|.
T Consensus       108 ~g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~-L~~n~~L~~L~L~~n~  162 (185)
T 1io0_A          108 SGILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANM-LEKNTTLLKFGYHFTQ  162 (185)
T ss_dssp             HHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHH-HHHCSSCCEEECCCSS
T ss_pred             HHHHHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHH-HHhCCCcCEEeccCCC
Confidence            32    233445566777777  556554321   1111 2345667777777766

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=98.12  E-value=6.7e-07  Score=67.07  Aligned_cols=114  Identities=16%  Similarity=0.101  Sum_probs=70.6

Q ss_pred             cCCCCCCcEecccCCC-CC-------chhhcCCCCCccEEEeeccC--CccccchhHhhhccCCCCeEEeeeccchhH--
Q 036414           37 SSSLKNLIFISALHPS-SC-------TPDILSRLPTVQTLRISGDL--SHYHSGVSKSLCELHKLECLKLANQGKMWQ--  104 (252)
Q Consensus        37 l~~l~~L~~L~~l~~~-~~-------~~~~l~~l~~L~~L~l~~~~--~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~--  104 (252)
                      +...++|++|+ ++.+ .+       +...+...++|++|+|++|.  ......+...+...++|++|++++ +.++.  
T Consensus        32 l~~~~~L~~L~-L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~-N~i~~~g  109 (185)
T 1io0_A           32 QNNDPDLEEVN-LNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVES-NFISGSG  109 (185)
T ss_dssp             HTTCTTCCEEE-CTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCS-SCCCHHH
T ss_pred             HhcCCCCCEEE-ecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcC-CcCCHHH
Confidence            45666777777 6666 54       33345667788888888875  111223445566667888888887 44411  


Q ss_pred             HHHhhc-cccCCCCCCceEEe--eecccCCCCc----hhhhcCCCCceEEeccCCcc
Q 036414          105 ITRMIL-SEYKFPPSLTQLSL--SNTELIEDPM----PTLEKLPHLEVLKLKQNSYF  154 (252)
Q Consensus       105 ~~~l~~-~~~~~~~~L~~l~l--~~~~~~~~~~----~~l~~~~~L~~L~l~~~~~~  154 (252)
                      ... +. .+... ++|++|++  ++|.++....    ..+...++|++|++++|.+.
T Consensus       110 ~~~-l~~~L~~n-~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i~  164 (185)
T 1io0_A          110 ILA-LVEALQSN-TSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQG  164 (185)
T ss_dssp             HHH-HHHGGGGC-SSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSHH
T ss_pred             HHH-HHHHHHhC-CCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCCC
Confidence            000 22 45555 78888888  7777764433    33445678888888877653

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=97.83  E-value=1.1e-05  Score=63.97  Aligned_cols=86  Identities=26%  Similarity=0.312  Sum_probs=59.8

Q ss_pred             hcCCCCceEEeccCCccCce-eeecCCCCCccccEEEecCCccccceeccccccc--cccceeeccCCCCCCCh------
Q 036414          138 EKLPHLEVLKLKQNSYFERK-LACVGCSSFPQLKILHLKSMLWLEEWTMGAGAMP--KLESLILNPCAYLRKLP------  208 (252)
Q Consensus       138 ~~~~~L~~L~l~~~~~~~~~-~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~l~--~L~~L~l~~~~~~~~~p------  208 (252)
                      ..+++|+.|++++|.+.... +... ...+++|+.|+|++|. ++++.. +..++  +|+.|++++|+..+.+|      
T Consensus       167 ~~l~~L~~L~Ls~N~l~~l~~l~~~-~~~l~~L~~L~Ls~N~-i~~~~~-l~~l~~l~L~~L~L~~Npl~~~~~~~~~y~  243 (267)
T 3rw6_A          167 ENIPELLSLNLSNNRLYRLDDMSSI-VQKAPNLKILNLSGNE-LKSERE-LDKIKGLKLEELWLDGNSLCDTFRDQSTYI  243 (267)
T ss_dssp             HHCTTCCEEECTTSCCCCCGGGTTH-HHHSTTCCEEECTTSC-CCSGGG-GGGGTTSCCSEEECTTSTTGGGCSSHHHHH
T ss_pred             hhCCCCCEEECCCCCCCCCccchhH-HhhCCCCCEEECCCCc-cCCchh-hhhcccCCcceEEccCCcCccccCcchhHH
Confidence            45788999999888876522 1111 3468889999998888 776622 34444  88999999988765554      


Q ss_pred             -HHHHhccccceeecccCC
Q 036414          209 -EELWRIKSLCKLELHWPQ  226 (252)
Q Consensus       209 -~~l~~l~~L~~L~l~~~~  226 (252)
                       ..+..+|+|+.|+=...+
T Consensus       244 ~~il~~~P~L~~LDg~~v~  262 (267)
T 3rw6_A          244 SAIRERFPKLLRLDGHELP  262 (267)
T ss_dssp             HHHHHHCTTCCEESSCBCC
T ss_pred             HHHHHHCcccCeECCcCCC
Confidence             246788999888765543

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=97.82  E-value=1.3e-05  Score=63.41  Aligned_cols=60  Identities=17%  Similarity=0.236  Sum_probs=30.9

Q ss_pred             HhhccccEEEecCCCCCC--CCCcccCCCCCCcEecccCCCCC-chhhcCCCC--CccEEEeeccC
Q 036414           14 WMMQKLMHLNFGSITLPA--PPKNYSSSLKNLIFISALHPSSC-TPDILSRLP--TVQTLRISGDL   74 (252)
Q Consensus        14 ~~l~~L~~L~l~~~~~~~--~~~~~l~~l~~L~~L~~l~~~~~-~~~~l~~l~--~L~~L~l~~~~   74 (252)
                      .++++|+.|++++|.+..  .++..+..+++|+.|+ ++.|.+ ....+..+.  +|++|++++|.
T Consensus       167 ~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~-Ls~N~i~~~~~l~~l~~l~L~~L~L~~Np  231 (267)
T 3rw6_A          167 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILN-LSGNELKSERELDKIKGLKLEELWLDGNS  231 (267)
T ss_dssp             HHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEE-CTTSCCCSGGGGGGGTTSCCSEEECTTST
T ss_pred             hhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEE-CCCCccCCchhhhhcccCCcceEEccCCc
Confidence            345666666666555543  2334445566666666 555554 222222222  55666665554

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}

Probab=97.71  E-value=0.00036  Score=58.37  Aligned_cols=194  Identities=15%  Similarity=0.089  Sum_probs=96.9

Q ss_pred             HHHhhccccEEEecCCCCCCCCCcccCCCCCCcEecccCCCCC--chhhcCCCCCccEEEeeccCCc-------------
Q 036414           12 DIWMMQKLMHLNFGSITLPAPPKNYSSSLKNLIFISALHPSSC--TPDILSRLPTVQTLRISGDLSH-------------   76 (252)
Q Consensus        12 ~i~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~~l~~~~~--~~~~l~~l~~L~~L~l~~~~~~-------------   76 (252)
                      ++..|.+|+.+.+. +.........+.++.+|+.+. +..+-.  ....+.++..|+.+.+..+...             
T Consensus       157 aF~~c~~L~~i~l~-~~~~~I~~~~F~~c~~L~~i~-l~~~~~~I~~~~F~~~~~L~~i~~~~~~~~i~~~~~~~~~l~~  234 (394)
T 4fs7_A          157 AFATCESLEYVSLP-DSMETLHNGLFSGCGKLKSIK-LPRNLKIIRDYCFAECILLENMEFPNSLYYLGDFALSKTGVKN  234 (394)
T ss_dssp             TTTTCTTCCEEECC-TTCCEECTTTTTTCTTCCBCC-CCTTCCEECTTTTTTCTTCCBCCCCTTCCEECTTTTTTCCCCE
T ss_pred             hhcccCCCcEEecC-CccceeccccccCCCCceEEE-cCCCceEeCchhhccccccceeecCCCceEeehhhcccCCCce
Confidence            57788888888887 333323334466677777776 544322  1222344455554444332100             


Q ss_pred             ------cccchhHhhhccCCCCeEEeeeccchhHHHHhhc--cccCCCCCCceEEeeecccCCCCchhhhcCCCCceEEe
Q 036414           77 ------YHSGVSKSLCELHKLECLKLANQGKMWQITRMIL--SEYKFPPSLTQLSLSNTELIEDPMPTLEKLPHLEVLKL  148 (252)
Q Consensus        77 ------~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~l~~--~~~~~~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l  148 (252)
                            ....-...+..+.+++.+.+..+..  .    +.  .+... ..++.+......+   ...++..+.+|+.+.+
T Consensus       235 i~ip~~~~~i~~~~f~~~~~l~~~~~~~~~~--~----i~~~~F~~~-~~l~~~~~~~~~i---~~~~F~~~~~L~~i~l  304 (394)
T 4fs7_A          235 IIIPDSFTELGKSVFYGCTDLESISIQNNKL--R----IGGSLFYNC-SGLKKVIYGSVIV---PEKTFYGCSSLTEVKL  304 (394)
T ss_dssp             EEECTTCCEECSSTTTTCSSCCEEEECCTTC--E----ECSCTTTTC-TTCCEEEECSSEE---CTTTTTTCTTCCEEEE
T ss_pred             EEECCCceecccccccccccceeEEcCCCcc--e----eeccccccc-cccceeccCceee---cccccccccccccccc
Confidence                  1111112233444555555543111  0    11  22222 4555554443322   2234556777777777


Q ss_pred             ccCCccCceeeecCCCCCccccEEEecCCcccccee-ccccccccccceeeccCCCCCCChH-HHHhccccceeeccc
Q 036414          149 KQNSYFERKLACVGCSSFPQLKILHLKSMLWLEEWT-MGAGAMPKLESLILNPCAYLRKLPE-ELWRIKSLCKLELHW  224 (252)
Q Consensus       149 ~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~-~~~~~l~~L~~L~l~~~~~~~~~p~-~l~~l~~L~~L~l~~  224 (252)
                      ..+ ... .-... +.++.+|+.+.+..+  ++.+. ..+..|.+|+.+.+..+  ...+.. .+..|++|+.+.+..
T Consensus       305 ~~~-i~~-I~~~a-F~~c~~L~~i~lp~~--v~~I~~~aF~~c~~L~~i~lp~~--l~~I~~~aF~~C~~L~~i~lp~  375 (394)
T 4fs7_A          305 LDS-VKF-IGEEA-FESCTSLVSIDLPYL--VEEIGKRSFRGCTSLSNINFPLS--LRKIGANAFQGCINLKKVELPK  375 (394)
T ss_dssp             CTT-CCE-ECTTT-TTTCTTCCEECCCTT--CCEECTTTTTTCTTCCEECCCTT--CCEECTTTBTTCTTCCEEEEEG
T ss_pred             ccc-cce-echhh-hcCCCCCCEEEeCCc--ccEEhHHhccCCCCCCEEEECcc--ccEehHHHhhCCCCCCEEEECC
Confidence            432 211 11112 456777888877532  45553 34566778888877554  223332 456677888887753

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}

Probab=97.66  E-value=0.00027  Score=59.16  Aligned_cols=195  Identities=10%  Similarity=-0.021  Sum_probs=113.7

Q ss_pred             ccccch-HHHhhccccEEEecCCCCCCCCCcccCCCCCCcEecccCCCCC------------------------chhhcC
Q 036414            6 IDHSSE-DIWMMQKLMHLNFGSITLPAPPKNYSSSLKNLIFISALHPSSC------------------------TPDILS   60 (252)
Q Consensus         6 l~~lp~-~i~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~~l~~~~~------------------------~~~~l~   60 (252)
                      +..++. ++..+.+|+.+.+..+ ........+.++..|+.+. +..+..                        ....+.
T Consensus       173 ~~~I~~~~F~~c~~L~~i~l~~~-~~~I~~~~F~~~~~L~~i~-~~~~~~~i~~~~~~~~~l~~i~ip~~~~~i~~~~f~  250 (394)
T 4fs7_A          173 METLHNGLFSGCGKLKSIKLPRN-LKIIRDYCFAECILLENME-FPNSLYYLGDFALSKTGVKNIIIPDSFTELGKSVFY  250 (394)
T ss_dssp             CCEECTTTTTTCTTCCBCCCCTT-CCEECTTTTTTCTTCCBCC-CCTTCCEECTTTTTTCCCCEEEECTTCCEECSSTTT
T ss_pred             cceeccccccCCCCceEEEcCCC-ceEeCchhhccccccceee-cCCCceEeehhhcccCCCceEEECCCceeccccccc
Confidence            445544 4677888888888632 2222223344555555544 222111                        111234


Q ss_pred             CCCCccEEEeeccCCccccchhHhhhccCCCCeEEeeeccchhHHHHhhccccCCCCCCceEEeeecccCCCCchhhhcC
Q 036414           61 RLPTVQTLRISGDLSHYHSGVSKSLCELHKLECLKLANQGKMWQITRMILSEYKFPPSLTQLSLSNTELIEDPMPTLEKL  140 (252)
Q Consensus        61 ~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~l~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~~  140 (252)
                      .+..++.+.+..+   ........+..+..++.+.... ..+.+     ..+... .+|+.+.+..+ +......++..|
T Consensus       251 ~~~~l~~~~~~~~---~~~i~~~~F~~~~~l~~~~~~~-~~i~~-----~~F~~~-~~L~~i~l~~~-i~~I~~~aF~~c  319 (394)
T 4fs7_A          251 GCTDLESISIQNN---KLRIGGSLFYNCSGLKKVIYGS-VIVPE-----KTFYGC-SSLTEVKLLDS-VKFIGEEAFESC  319 (394)
T ss_dssp             TCSSCCEEEECCT---TCEECSCTTTTCTTCCEEEECS-SEECT-----TTTTTC-TTCCEEEECTT-CCEECTTTTTTC
T ss_pred             ccccceeEEcCCC---cceeeccccccccccceeccCc-eeecc-----cccccc-ccccccccccc-cceechhhhcCC
Confidence            4666777776555   2222334556777888777655 32211     034444 89999988754 443456778889


Q ss_pred             CCCceEEeccCCccCceeeecCCCCCccccEEEecCCcccccee-ccccccccccceeeccCCCCCCChHHHHhccccce
Q 036414          141 PHLEVLKLKQNSYFERKLACVGCSSFPQLKILHLKSMLWLEEWT-MGAGAMPKLESLILNPCAYLRKLPEELWRIKSLCK  219 (252)
Q Consensus       141 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~-~~~~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~  219 (252)
                      .+|+.+.+..+ +.. .-... +.++.+|+.+.+..+  ++.+. ..+..|++|+.+.+..+-  ..+.....++++|+.
T Consensus       320 ~~L~~i~lp~~-v~~-I~~~a-F~~c~~L~~i~lp~~--l~~I~~~aF~~C~~L~~i~lp~~~--~~~~~~F~~c~~L~~  392 (394)
T 4fs7_A          320 TSLVSIDLPYL-VEE-IGKRS-FRGCTSLSNINFPLS--LRKIGANAFQGCINLKKVELPKRL--EQYRYDFEDTTKFKW  392 (394)
T ss_dssp             TTCCEECCCTT-CCE-ECTTT-TTTCTTCCEECCCTT--CCEECTTTBTTCTTCCEEEEEGGG--GGGGGGBCTTCEEEE
T ss_pred             CCCCEEEeCCc-ccE-EhHHh-ccCCCCCCEEEECcc--ccEehHHHhhCCCCCCEEEECCCC--EEhhheecCCCCCcE
Confidence            99999999533 322 11223 568899999998654  56663 346788999999996642  223334556677665


Q ss_pred             e
Q 036414          220 L  220 (252)
Q Consensus       220 L  220 (252)
                      +
T Consensus       393 I  393 (394)
T 4fs7_A          393 I  393 (394)
T ss_dssp             E
T ss_pred             E
Confidence            4

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}

Probab=97.39  E-value=0.0042  Score=51.83  Aligned_cols=102  Identities=13%  Similarity=0.180  Sum_probs=61.2

Q ss_pred             CCCceEEeeecccCCCCchhhhcCCCCceEEeccCCccCceeeecCCCCCccccEEEecCCcccccee-ccccccccccc
Q 036414          117 PSLTQLSLSNTELIEDPMPTLEKLPHLEVLKLKQNSYFERKLACVGCSSFPQLKILHLKSMLWLEEWT-MGAGAMPKLES  195 (252)
Q Consensus       117 ~~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~-~~~~~l~~L~~  195 (252)
                      .+|+.+.+...... ....++..+++|+.+.+. +.... ..... +.++.+|+.+.+..+  ++.+. ..+..|.+|+.
T Consensus       265 ~~L~~i~lp~~~~~-I~~~aF~~c~~L~~i~l~-~~i~~-I~~~a-F~~c~~L~~i~lp~~--v~~I~~~aF~~C~~L~~  338 (394)
T 4gt6_A          265 AYLASVKMPDSVVS-IGTGAFMNCPALQDIEFS-SRITE-LPESV-FAGCISLKSIDIPEG--ITQILDDAFAGCEQLER  338 (394)
T ss_dssp             SSCCEEECCTTCCE-ECTTTTTTCTTCCEEECC-TTCCE-ECTTT-TTTCTTCCEEECCTT--CCEECTTTTTTCTTCCE
T ss_pred             ccccEEecccccce-ecCcccccccccccccCC-Ccccc-cCcee-ecCCCCcCEEEeCCc--ccEehHhHhhCCCCCCE
Confidence            45566655443221 234455667777777773 22221 11122 557788888888643  45553 34677888999


Q ss_pred             eeeccCCCCCCCh-HHHHhccccceeecccCC
Q 036414          196 LILNPCAYLRKLP-EELWRIKSLCKLELHWPQ  226 (252)
Q Consensus       196 L~l~~~~~~~~~p-~~l~~l~~L~~L~l~~~~  226 (252)
                      +.+..+  ...+. ..+..|.+|+.+.+.+..
T Consensus       339 i~ip~s--v~~I~~~aF~~C~~L~~i~~~~~~  368 (394)
T 4gt6_A          339 IAIPSS--VTKIPESAFSNCTALNNIEYSGSR  368 (394)
T ss_dssp             EEECTT--CCBCCGGGGTTCTTCCEEEESSCH
T ss_pred             EEECcc--cCEEhHhHhhCCCCCCEEEECCce
Confidence            998543  23444 356788999999987753

>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}

Probab=96.38  E-value=0.011  Score=48.78  Aligned_cols=147  Identities=12%  Similarity=0.031  Sum_probs=91.2

Q ss_pred             hhccccEEEecCCCCCCCCCcccCCCCCCcEecccCCCCC--chhhcCCCCCccEEEeeccCCccccchhHhhhccCCCC
Q 036414           15 MMQKLMHLNFGSITLPAPPKNYSSSLKNLIFISALHPSSC--TPDILSRLPTVQTLRISGDLSHYHSGVSKSLCELHKLE   92 (252)
Q Consensus        15 ~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~~l~~~~~--~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~   92 (252)
                      .+..+....+. ..........+....+|+.+. +..+-.  ....+..+.+|+.+.+..+   ....-...+..+.+|+
T Consensus       192 ~~~~~~~~~~~-~~~~~i~~~~f~~~~~l~~i~-~~~~~~~i~~~~f~~~~~L~~i~lp~~---v~~I~~~aF~~~~~l~  266 (379)
T 4h09_A          192 AAKTGTEFTIP-STVKTVTAYGFSYGKNLKKIT-ITSGVTTLGDGAFYGMKALDEIAIPKN---VTSIGSFLLQNCTALK  266 (379)
T ss_dssp             TTCCCSEEECC-TTCCEECTTTTTTCSSCSEEE-CCTTCCEECTTTTTTCSSCCEEEECTT---CCEECTTTTTTCTTCC
T ss_pred             ccccccccccc-cceeEEeecccccccccceee-eccceeEEccccccCCccceEEEcCCC---ccEeCccccceeehhc
Confidence            34445555444 222222333456667777777 544322  2333567888999988665   2333344567788899


Q ss_pred             eEEeeeccchhHHHHhhc--cccCCCCCCceEEeeecccCCCCchhhhcCCCCceEEeccCCccCceeeecCCCCCcccc
Q 036414           93 CLKLANQGKMWQITRMIL--SEYKFPPSLTQLSLSNTELIEDPMPTLEKLPHLEVLKLKQNSYFERKLACVGCSSFPQLK  170 (252)
Q Consensus        93 ~L~l~~~~~~~~~~~l~~--~~~~~~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~  170 (252)
                      .+.+...  +..    ++  .+... ++|+.+.+..+.++.....+|..|.+|+.+.+..+ +.. .-... +.++.+|+
T Consensus       267 ~i~l~~~--i~~----i~~~aF~~c-~~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~~-l~~-I~~~a-F~~C~~L~  336 (379)
T 4h09_A          267 TLNFYAK--VKT----VPYLLCSGC-SNLTKVVMDNSAIETLEPRVFMDCVKLSSVTLPTA-LKT-IQVYA-FKNCKALS  336 (379)
T ss_dssp             EEEECCC--CSE----ECTTTTTTC-TTCCEEEECCTTCCEECTTTTTTCTTCCEEECCTT-CCE-ECTTT-TTTCTTCC
T ss_pred             ccccccc--cee----ccccccccc-cccccccccccccceehhhhhcCCCCCCEEEcCcc-ccE-EHHHH-hhCCCCCC
Confidence            9888652  222    33  34444 89999999888777666778889999999999543 322 11123 56788888


Q ss_pred             EEEecC
Q 036414          171 ILHLKS  176 (252)
Q Consensus       171 ~L~l~~  176 (252)
                      .+.+..
T Consensus       337 ~i~ip~  342 (379)
T 4h09_A          337 TISYPK  342 (379)
T ss_dssp             CCCCCT
T ss_pred             EEEECC
Confidence            887743

>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}

Probab=96.31  E-value=0.021  Score=47.15  Aligned_cols=180  Identities=9%  Similarity=0.029  Sum_probs=110.1

Q ss_pred             Cccccch-HHHhhccccEEEecCCCCCC------------CCCcccCCCCCCcEecccCCCCC--chhhcCCCCCccEEE
Q 036414            5 YIDHSSE-DIWMMQKLMHLNFGSITLPA------------PPKNYSSSLKNLIFISALHPSSC--TPDILSRLPTVQTLR   69 (252)
Q Consensus         5 ~l~~lp~-~i~~l~~L~~L~l~~~~~~~------------~~~~~l~~l~~L~~L~~l~~~~~--~~~~l~~l~~L~~L~   69 (252)
                      .++.+.. ++..+.+++...+.......            .....+.....+..+. +.....  .......+.+|+.+.
T Consensus       145 ~v~~i~~~~f~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~~~~f~~~~~l~~i~  223 (379)
T 4h09_A          145 SVTTIKDGIGYKAENLEKIEVSSNNKNYVAENYVLYNKNKTILESYPAAKTGTEFT-IPSTVKTVTAYGFSYGKNLKKIT  223 (379)
T ss_dssp             TCCEECSCTTTTCTTCCEEEECTTCSSEEEETTEEEETTSSEEEECCTTCCCSEEE-CCTTCCEECTTTTTTCSSCSEEE
T ss_pred             eeeccccchhcccccccccccccccceeecccceecccccceeccccccccccccc-cccceeEEeecccccccccceee
Confidence            3445533 46778888888776433211            1111233344455544 332222  333355678899888


Q ss_pred             eeccCCccccchhHhhhccCCCCeEEeeeccchhHHHHhhc--cccCCCCCCceEEeeecccCCCCchhhhcCCCCceEE
Q 036414           70 ISGDLSHYHSGVSKSLCELHKLECLKLANQGKMWQITRMIL--SEYKFPPSLTQLSLSNTELIEDPMPTLEKLPHLEVLK  147 (252)
Q Consensus        70 l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~l~~--~~~~~~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~  147 (252)
                      +...   ....-...+..+.+|+.+.+..+  +..    +.  .+... .+|+.+.+..+ +......++..|.+|+.+.
T Consensus       224 ~~~~---~~~i~~~~f~~~~~L~~i~lp~~--v~~----I~~~aF~~~-~~l~~i~l~~~-i~~i~~~aF~~c~~L~~i~  292 (379)
T 4h09_A          224 ITSG---VTTLGDGAFYGMKALDEIAIPKN--VTS----IGSFLLQNC-TALKTLNFYAK-VKTVPYLLCSGCSNLTKVV  292 (379)
T ss_dssp             CCTT---CCEECTTTTTTCSSCCEEEECTT--CCE----ECTTTTTTC-TTCCEEEECCC-CSEECTTTTTTCTTCCEEE
T ss_pred             eccc---eeEEccccccCCccceEEEcCCC--ccE----eCcccccee-ehhcccccccc-ceecccccccccccccccc
Confidence            8665   33333456678889999988653  212    33  34444 88999988654 3434556788999999999


Q ss_pred             eccCCccCceeeecCCCCCccccEEEecCCcccccee-ccccccccccceeecc
Q 036414          148 LKQNSYFERKLACVGCSSFPQLKILHLKSMLWLEEWT-MGAGAMPKLESLILNP  200 (252)
Q Consensus       148 l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~-~~~~~l~~L~~L~l~~  200 (252)
                      +..+.+.... ... +.++.+|+.+.+..+  ++.+. ..+..|.+|+.+.+..
T Consensus       293 l~~~~i~~I~-~~a-F~~c~~L~~i~lp~~--l~~I~~~aF~~C~~L~~i~ip~  342 (379)
T 4h09_A          293 MDNSAIETLE-PRV-FMDCVKLSSVTLPTA--LKTIQVYAFKNCKALSTISYPK  342 (379)
T ss_dssp             ECCTTCCEEC-TTT-TTTCTTCCEEECCTT--CCEECTTTTTTCTTCCCCCCCT
T ss_pred             ccccccceeh-hhh-hcCCCCCCEEEcCcc--ccEEHHHHhhCCCCCCEEEECC
Confidence            9766554321 223 668899999998643  56663 3467788898888854

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}

Probab=96.12  E-value=0.028  Score=46.72  Aligned_cols=127  Identities=9%  Similarity=0.123  Sum_probs=78.1

Q ss_pred             hcCCCCCccEEEeeccCCccccchhHhhhccCCCCeEEeeeccchhHHHHhhc--cccCCCCCCceEEeeecccCCCCch
Q 036414           58 ILSRLPTVQTLRISGDLSHYHSGVSKSLCELHKLECLKLANQGKMWQITRMIL--SEYKFPPSLTQLSLSNTELIEDPMP  135 (252)
Q Consensus        58 ~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~l~~--~~~~~~~~L~~l~l~~~~~~~~~~~  135 (252)
                      .+..+.+|+.+.+...   ....-...+..+.+|+.+.+..  .+..    ++  .+... .+|+.+.+..+ ++.....
T Consensus       260 aF~~c~~L~~i~lp~~---~~~I~~~aF~~c~~L~~i~l~~--~i~~----I~~~aF~~c-~~L~~i~lp~~-v~~I~~~  328 (394)
T 4gt6_A          260 AFDSCAYLASVKMPDS---VVSIGTGAFMNCPALQDIEFSS--RITE----LPESVFAGC-ISLKSIDIPEG-ITQILDD  328 (394)
T ss_dssp             TTTTCSSCCEEECCTT---CCEECTTTTTTCTTCCEEECCT--TCCE----ECTTTTTTC-TTCCEEECCTT-CCEECTT
T ss_pred             eeeecccccEEecccc---cceecCcccccccccccccCCC--cccc----cCceeecCC-CCcCEEEeCCc-ccEehHh
Confidence            3567888999988665   2333345667889999998864  2222    44  44444 89999998754 4434567


Q ss_pred             hhhcCCCCceEEeccCCccCceeeecCCCCCccccEEEecCCccccceeccccccccccceeeccC
Q 036414          136 TLEKLPHLEVLKLKQNSYFERKLACVGCSSFPQLKILHLKSMLWLEEWTMGAGAMPKLESLILNPC  201 (252)
Q Consensus       136 ~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~~  201 (252)
                      +|..|.+|+.+.+..+ .... -... +.++++|+.+.+.++.  ..+ .....+.+|+.+.+..+
T Consensus       329 aF~~C~~L~~i~ip~s-v~~I-~~~a-F~~C~~L~~i~~~~~~--~~~-~~~~~~~~L~~i~i~~~  388 (394)
T 4gt6_A          329 AFAGCEQLERIAIPSS-VTKI-PESA-FSNCTALNNIEYSGSR--SQW-NAISTDSGLQNLPVAPG  388 (394)
T ss_dssp             TTTTCTTCCEEEECTT-CCBC-CGGG-GTTCTTCCEEEESSCH--HHH-HTCBCCCCC--------
T ss_pred             HhhCCCCCCEEEECcc-cCEE-hHhH-hhCCCCCCEEEECCce--eeh-hhhhccCCCCEEEeCCC
Confidence            7888999999999543 3221 1123 5689999999998765  222 23445677777777554

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1

Probab=95.51  E-value=0.02  Score=42.84  Aligned_cols=89  Identities=13%  Similarity=0.144  Sum_probs=43.4

Q ss_pred             cCCCCCccEEEeecc-C--CccccchhHhhhccCCCCeEEeeeccchhHH--HHhhc-cccCCCCCCceEEeeecccCCC
Q 036414           59 LSRLPTVQTLRISGD-L--SHYHSGVSKSLCELHKLECLKLANQGKMWQI--TRMIL-SEYKFPPSLTQLSLSNTELIED  132 (252)
Q Consensus        59 l~~l~~L~~L~l~~~-~--~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~--~~l~~-~~~~~~~~L~~l~l~~~~~~~~  132 (252)
                      +..-+.|++|+|+++ .  ......+.+.+..-+.|+.|++++ +.+++-  +- +. .+.. .+.|+.|+|+.|.++..
T Consensus        37 l~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~-n~igd~ga~a-lA~aL~~-N~tL~~L~L~~N~Ig~~  113 (197)
T 1pgv_A           37 REDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLAN-TAISDSEARG-LIELIET-SPSLRVLNVESNFLTPE  113 (197)
T ss_dssp             HTTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTT-SCCBHHHHTT-HHHHHHH-CSSCCEEECCSSBCCHH
T ss_pred             HhcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccC-CCCChHHHHH-HHHHHhc-CCccCeEecCCCcCCHH
Confidence            344556666666653 2  112233445555556666676666 333110  00 11 1112 25677777777766643


Q ss_pred             Cchh----hhcCCCCceEEecc
Q 036414          133 PMPT----LEKLPHLEVLKLKQ  150 (252)
Q Consensus       133 ~~~~----l~~~~~L~~L~l~~  150 (252)
                      ....    +..-..|++|++++
T Consensus       114 Ga~ala~aL~~N~tL~~L~L~n  135 (197)
T 1pgv_A          114 LLARLLRSTLVTQSIVEFKADN  135 (197)
T ss_dssp             HHHHHHHHTTTTCCCSEEECCC
T ss_pred             HHHHHHHHHhhCCceeEEECCC
Confidence            3332    22334577777754

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1

Probab=95.32  E-value=0.0062  Score=45.65  Aligned_cols=111  Identities=13%  Similarity=0.134  Sum_probs=60.5

Q ss_pred             CCCCCCcEecccCCC-CC-------chhhcCCCCCccEEEeeccC--CccccchhHhhhccCCCCeEEeeeccchhH--H
Q 036414           38 SSLKNLIFISALHPS-SC-------TPDILSRLPTVQTLRISGDL--SHYHSGVSKSLCELHKLECLKLANQGKMWQ--I  105 (252)
Q Consensus        38 ~~l~~L~~L~~l~~~-~~-------~~~~l~~l~~L~~L~l~~~~--~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~--~  105 (252)
                      .+-+.|++|+ ++.+ .+       +.+.+..-+.|++|+|++|.  ......+...+..-+.|++|++.+ +.++.  .
T Consensus        38 ~~n~~L~~L~-L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~-N~Ig~~Ga  115 (197)
T 1pgv_A           38 EDDTDLKEVN-INNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVES-NFLTPELL  115 (197)
T ss_dssp             TTCSSCCEEE-CTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCS-SBCCHHHH
T ss_pred             hcCCCccEEE-CCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCC-CcCCHHHH
Confidence            4455677777 6553 33       33445666777777777775  112233445555667788888877 44411  0


Q ss_pred             HHhhc-cccCCCCCCceEEeeec---ccCCC----CchhhhcCCCCceEEeccCC
Q 036414          106 TRMIL-SEYKFPPSLTQLSLSNT---ELIED----PMPTLEKLPHLEVLKLKQNS  152 (252)
Q Consensus       106 ~~l~~-~~~~~~~~L~~l~l~~~---~~~~~----~~~~l~~~~~L~~L~l~~~~  152 (252)
                      .. +. .+..- ..|+.|+++++   .+...    ....+..-+.|+.|+++.+.
T Consensus       116 ~a-la~aL~~N-~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~~  168 (197)
T 1pgv_A          116 AR-LLRSTLVT-QSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFAS  168 (197)
T ss_dssp             HH-HHHHTTTT-CCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCC
T ss_pred             HH-HHHHHhhC-CceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCCC
Confidence            00 11 33332 66888888754   22321    12334556678888775443

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*

Probab=93.89  E-value=0.055  Score=37.54  Aligned_cols=37  Identities=32%  Similarity=0.442  Sum_probs=21.9

Q ss_pred             CCCCceEEeeecccCCCCchhhhcCCCCceEEeccCC
Q 036414          116 PPSLTQLSLSNTELIEDPMPTLEKLPHLEVLKLKQNS  152 (252)
Q Consensus       116 ~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~  152 (252)
                      |+++++|+|++|+++......+..+++|+.|+|.+|.
T Consensus        30 p~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP   66 (130)
T 3rfe_A           30 PVDTTELVLTGNNLTALPPGLLDALPALRTAHLGANP   66 (130)
T ss_dssp             CTTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSC
T ss_pred             CcCCCEEECCCCcCCccChhhhhhccccCEEEecCCC
Confidence            3566666666666665555555556666666665544

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*

Probab=92.96  E-value=0.077  Score=36.77  Aligned_cols=32  Identities=19%  Similarity=0.279  Sum_probs=16.8

Q ss_pred             CCcEecccCCCCC--chhh-cCCCCCccEEEeeccC
Q 036414           42 NLIFISALHPSSC--TPDI-LSRLPTVQTLRISGDL   74 (252)
Q Consensus        42 ~L~~L~~l~~~~~--~~~~-l~~l~~L~~L~l~~~~   74 (252)
                      +|++|+ ++.|.+  ++.. +..+++|+.|+|++|.
T Consensus        32 ~l~~L~-Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP   66 (130)
T 3rfe_A           32 DTTELV-LTGNNLTALPPGLLDALPALRTAHLGANP   66 (130)
T ss_dssp             TCSEEE-CTTSCCSSCCTTTGGGCTTCCEEECCSSC
T ss_pred             CCCEEE-CCCCcCCccChhhhhhccccCEEEecCCC
Confidence            455555 555554  2222 4445566666666554

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	252
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	99.83
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	99.8
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	99.8
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	99.78
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	99.72
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	99.71
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	99.69
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	99.69
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	99.69
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	99.66
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	99.66
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	99.65
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.65
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.65
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.62
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	99.62
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.62
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	99.57
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	99.51
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	99.43
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	99.34
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	99.31
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	99.3
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	99.29
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	99.28
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	99.27
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	99.16
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	99.15
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	99.15
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	99.13
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	98.99
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	98.95
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	98.9
d2ifga3	156	High affinity nerve growth factor receptor, N-term	98.86
d2ifga3	156	High affinity nerve growth factor receptor, N-term	98.75
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	98.25
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	97.78
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	97.62
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	97.33
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	97.27
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	96.83
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	96.53

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=99.83  E-value=9.3e-21  Score=153.30  Aligned_cols=206  Identities=18%  Similarity=0.152  Sum_probs=133.1

Q ss_pred             ccchHHHhhccccEEEecC-CCCCCCCCcccCCCCCCcEecccCCCCC---chhhcCCCCCccEEEeeccCCccccchhH
Q 036414            8 HSSEDIWMMQKLMHLNFGS-ITLPAPPKNYSSSLKNLIFISALHPSSC---TPDILSRLPTVQTLRISGDLSHYHSGVSK   83 (252)
Q Consensus         8 ~lp~~i~~l~~L~~L~l~~-~~~~~~~~~~l~~l~~L~~L~~l~~~~~---~~~~l~~l~~L~~L~l~~~~~~~~~~~~~   83 (252)
                      .+|.+++++++|++|++++ |.+...+|..+.++++|++|+ ++.+.+   .+..+..+.+|+.++++.|.  ....+|.
T Consensus        67 ~lp~~l~~L~~L~~L~Ls~~N~l~g~iP~~i~~L~~L~~L~-Ls~N~l~~~~~~~~~~~~~L~~l~l~~N~--~~~~~p~  143 (313)
T d1ogqa_          67 PIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLY-ITHTNVSGAIPDFLSQIKTLVTLDFSYNA--LSGTLPP  143 (313)
T ss_dssp             ECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEE-EEEECCEEECCGGGGGCTTCCEEECCSSE--EESCCCG
T ss_pred             CCChHHhcCccccccccccccccccccccccccccccchhh-hccccccccccccccchhhhccccccccc--ccccCch
Confidence            6899999999999999985 567778999999999999999 888876   55557788999999999887  6777888


Q ss_pred             hhhccCCCCeEEeeeccchhHHHHhhc-cccCCCCCCceEEeeecccCCCCchhhh-----------------------c
Q 036414           84 SLCELHKLECLKLANQGKMWQITRMIL-SEYKFPPSLTQLSLSNTELIEDPMPTLE-----------------------K  139 (252)
Q Consensus        84 ~l~~l~~L~~L~l~~~~~~~~~~~l~~-~~~~~~~~L~~l~l~~~~~~~~~~~~l~-----------------------~  139 (252)
                      .+.++++++.+++.++...+.    +| .+..+...++.++++.+++....+..++                       .
T Consensus       144 ~l~~l~~L~~l~l~~n~l~~~----ip~~~~~l~~l~~~l~~~~n~l~~~~~~~~~~l~~~~l~l~~~~~~~~~~~~~~~  219 (313)
T d1ogqa_         144 SISSLPNLVGITFDGNRISGA----IPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSRNMLEGDASVLFGS  219 (313)
T ss_dssp             GGGGCTTCCEEECCSSCCEEE----CCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCCCSEEECCSSEEEECCGGGCCT
T ss_pred             hhccCcccceeeccccccccc----ccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            889999999999988432234    55 5555523346666666665544444443                       3


Q ss_pred             CCCCceEEeccCCccCceeeecCCCCCccccEEEecCCcccc-ceeccccccccccceeeccCCCCCCChHHHHhccccc
Q 036414          140 LPHLEVLKLKQNSYFERKLACVGCSSFPQLKILHLKSMLWLE-EWTMGAGAMPKLESLILNPCAYLRKLPEELWRIKSLC  218 (252)
Q Consensus       140 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~-~~~~~~~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~  218 (252)
                      +++++.++++.+.+.....  . .+.+++|+.|++++|+ ++ .+|..++.+++|++|++++|...+.+|. ..++.+|+
T Consensus       220 ~~~l~~l~~~~~~l~~~~~--~-~~~~~~L~~L~Ls~N~-l~g~iP~~l~~L~~L~~L~Ls~N~l~g~iP~-~~~L~~L~  294 (313)
T d1ogqa_         220 DKNTQKIHLAKNSLAFDLG--K-VGLSKNLNGLDLRNNR-IYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQ-GGNLQRFD  294 (313)
T ss_dssp             TSCCSEEECCSSEECCBGG--G-CCCCTTCCEEECCSSC-CEECCCGGGGGCTTCCEEECCSSEEEEECCC-STTGGGSC
T ss_pred             ccccccccccccccccccc--c-cccccccccccCccCe-ecccCChHHhCCCCCCEEECcCCcccccCCC-cccCCCCC
Confidence            4445555554444333211  2 3445555555555555 44 4455555555555555555554444443 23445555


Q ss_pred             eeecccC
Q 036414          219 KLELHWP  225 (252)
Q Consensus       219 ~L~l~~~  225 (252)
                      .+++.++
T Consensus       295 ~l~l~~N  301 (313)
T d1ogqa_         295 VSAYANN  301 (313)
T ss_dssp             GGGTCSS
T ss_pred             HHHhCCC
Confidence            5555443

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.80  E-value=7.7e-20  Score=144.58  Aligned_cols=186  Identities=18%  Similarity=0.139  Sum_probs=124.2

Q ss_pred             CCCccccchHHHhhccccEEEecCCCCCCCCCcccCCCCCCcEecccCCCCC-chhhcCCCCCccEEEeeccCCccccch
Q 036414            3 SSYIDHSSEDIWMMQKLMHLNFGSITLPAPPKNYSSSLKNLIFISALHPSSC-TPDILSRLPTVQTLRISGDLSHYHSGV   81 (252)
Q Consensus         3 ~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~~l~~~~~-~~~~l~~l~~L~~L~l~~~~~~~~~~~   81 (252)
                      +..++++|..+.  +++++|++++|.+....+..+.++++|++|+ ++.+.+ ..+..+.+++|++|++++|.   ....
T Consensus        19 ~~~L~~iP~~lp--~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~-L~~N~l~~l~~~~~l~~L~~L~Ls~N~---l~~~   92 (266)
T d1p9ag_          19 KRNLTALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLN-LDRAELTKLQVDGTLPVLGTLDLSHNQ---LQSL   92 (266)
T ss_dssp             TSCCSSCCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEE-CTTSCCCEEECCSCCTTCCEEECCSSC---CSSC
T ss_pred             CCCCCeeCcCcC--cCCCEEECcCCcCCCcCHHHhhccccccccc-ccccccccccccccccccccccccccc---cccc
Confidence            355677776553  4677888886666544445677778888887 777766 33345667778888887774   3444


Q ss_pred             hHhhhccCCCCeEEeeeccchhHHHHhhc--cccCCCCCCceEEeeecccCCCCchhhhcCCCCceEEeccCCccCceee
Q 036414           82 SKSLCELHKLECLKLANQGKMWQITRMIL--SEYKFPPSLTQLSLSNTELIEDPMPTLEKLPHLEVLKLKQNSYFERKLA  159 (252)
Q Consensus        82 ~~~l~~l~~L~~L~l~~~~~~~~~~~l~~--~~~~~~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~  159 (252)
                      +..+..+++|+.+++.+ +.+..    ++  .+..+ .+++.+++.+|.+....+..+..+++++.+++++|.+......
T Consensus        93 ~~~~~~l~~L~~L~l~~-~~~~~----~~~~~~~~l-~~l~~L~l~~n~l~~l~~~~~~~l~~l~~l~l~~N~l~~~~~~  166 (266)
T d1p9ag_          93 PLLGQTLPALTVLDVSF-NRLTS----LPLGALRGL-GELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAG  166 (266)
T ss_dssp             CCCTTTCTTCCEEECCS-SCCCC----CCSSTTTTC-TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSCCCTT
T ss_pred             ccccccccccccccccc-cccce----eeccccccc-cccccccccccccceeccccccccccchhcccccccccccCcc
Confidence            55666777777777776 33323    33  44455 7777777777777766666666777777777777776553222


Q ss_pred             ecCCCCCccccEEEecCCccccceeccccccccccceeeccCCC
Q 036414          160 CVGCSSFPQLKILHLKSMLWLEEWTMGAGAMPKLESLILNPCAY  203 (252)
Q Consensus       160 ~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~~~~  203 (252)
                       . +..+++|++|++++|+ ++.+|..+..+++|+.|++++|+.
T Consensus       167 -~-~~~l~~L~~L~Ls~N~-L~~lp~~~~~~~~L~~L~L~~Np~  207 (266)
T d1p9ag_         167 -L-LNGLENLDTLLLQENS-LYTIPKGFFGSHLLPFAFLHGNPW  207 (266)
T ss_dssp             -T-TTTCTTCCEEECCSSC-CCCCCTTTTTTCCCSEEECCSCCB
T ss_pred             -c-cccccccceeecccCC-CcccChhHCCCCCCCEEEecCCCC
Confidence             2 4567777788877777 777776666777777777777763

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.80  E-value=5.1e-19  Score=141.08  Aligned_cols=210  Identities=17%  Similarity=0.125  Sum_probs=166.2

Q ss_pred             CCCccccchHHHhhccccEEEecCCCCCCCCCcccCCCCCCcEecccCCCCC---chhhcCCCCCccEEEeeccCCcccc
Q 036414            3 SSYIDHSSEDIWMMQKLMHLNFGSITLPAPPKNYSSSLKNLIFISALHPSSC---TPDILSRLPTVQTLRISGDLSHYHS   79 (252)
Q Consensus         3 ~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~~l~~~~~---~~~~l~~l~~L~~L~l~~~~~~~~~   79 (252)
                      +.+++++|..+.  +.+++|++++|.+....+..+.++++|++|+ ++.+..   .+.....++.++.+......  ...
T Consensus        20 ~~~L~~iP~~ip--~~~~~L~Ls~N~i~~i~~~~f~~l~~L~~L~-ls~n~l~~i~~~~~~~~~~~~~l~~~~~~--~~~   94 (284)
T d1ozna_          20 QQGLQAVPVGIP--AASQRIFLHGNRISHVPAASFRACRNLTILW-LHSNVLARIDAAAFTGLALLEQLDLSDNA--QLR   94 (284)
T ss_dssp             SSCCSSCCTTCC--TTCSEEECTTSCCCEECTTTTTTCTTCCEEE-CCSSCCCEECTTTTTTCTTCCEEECCSCT--TCC
T ss_pred             CCCCCccCCCCC--CCCCEEECcCCcCCCCCHHHhhccccccccc-ccccccccccccccccccccccccccccc--ccc
Confidence            456888888764  5689999998887655556799999999999 888876   34446678889998876553  333


Q ss_pred             ch-hHhhhccCCCCeEEeeeccchhHHHHhhc--cccCCCCCCceEEeeecccCCCCchhhhcCCCCceEEeccCCccCc
Q 036414           80 GV-SKSLCELHKLECLKLANQGKMWQITRMIL--SEYKFPPSLTQLSLSNTELIEDPMPTLEKLPHLEVLKLKQNSYFER  156 (252)
Q Consensus        80 ~~-~~~l~~l~~L~~L~l~~~~~~~~~~~l~~--~~~~~~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~  156 (252)
                      .+ +..+..+++|++|++.+ +.+..    ++  .+... .+|+.+++.++.++...+.++..+++|++|++++|.+...
T Consensus        95 ~l~~~~~~~l~~L~~L~l~~-n~~~~----~~~~~~~~~-~~L~~l~l~~N~l~~i~~~~f~~~~~L~~L~l~~N~l~~l  168 (284)
T d1ozna_          95 SVDPATFHGLGRLHTLHLDR-CGLQE----LGPGLFRGL-AALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSV  168 (284)
T ss_dssp             CCCTTTTTTCTTCCEEECTT-SCCCC----CCTTTTTTC-TTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEE
T ss_pred             cccchhhcccccCCEEecCC-ccccc----ccccccchh-cccchhhhccccccccChhHhccccchhhcccccCccccc
Confidence            33 56788999999999998 44433    33  44555 8999999999999977778889999999999999987653


Q ss_pred             eeeecCCCCCccccEEEecCCccccce-eccccccccccceeeccCCCCCCChHHHHhccccceeecccCC
Q 036414          157 KLACVGCSSFPQLKILHLKSMLWLEEW-TMGAGAMPKLESLILNPCAYLRKLPEELWRIKSLCKLELHWPQ  226 (252)
Q Consensus       157 ~~~~~~~~~~~~L~~L~l~~~~~l~~~-~~~~~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~l~~~~  226 (252)
                      .. .. +.++++|+.+++++|. +..+ +..++.+++|+.|++++|......+..+..+++|+++++++.+
T Consensus       169 ~~-~~-f~~l~~L~~l~l~~N~-l~~i~~~~f~~l~~L~~L~l~~N~i~~~~~~~~~~~~~L~~L~l~~N~  236 (284)
T d1ozna_         169 PE-RA-FRGLHSLDRLLLHQNR-VAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNP  236 (284)
T ss_dssp             CT-TT-TTTCTTCCEEECCSSC-CCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSC
T ss_pred             ch-hh-hccccccchhhhhhcc-ccccChhHhhhhhhcccccccccccccccccccccccccCEEEecCCC
Confidence            22 23 6789999999999999 7766 6677889999999999998876666778899999999998743

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=99.78  E-value=1.1e-19  Score=146.87  Aligned_cols=191  Identities=14%  Similarity=0.161  Sum_probs=151.2

Q ss_pred             cccchHHHhhccccEEEecCCCCCCCCCcccCCCCCCcEecccCCCCC---chhhcCCCCCccEEEeeccCCccccchhH
Q 036414            7 DHSSEDIWMMQKLMHLNFGSITLPAPPKNYSSSLKNLIFISALHPSSC---TPDILSRLPTVQTLRISGDLSHYHSGVSK   83 (252)
Q Consensus         7 ~~lp~~i~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~~l~~~~~---~~~~l~~l~~L~~L~l~~~~~~~~~~~~~   83 (252)
                      +.+|.+|+++++|++|++++|.+....+..+..+.+|+.++ +..+..   .|..++.+++++.++++++.  ....+|.
T Consensus        91 g~iP~~i~~L~~L~~L~Ls~N~l~~~~~~~~~~~~~L~~l~-l~~N~~~~~~p~~l~~l~~L~~l~l~~n~--l~~~ip~  167 (313)
T d1ogqa_          91 GPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLD-FSYNALSGTLPPSISSLPNLVGITFDGNR--ISGAIPD  167 (313)
T ss_dssp             SCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEE-CCSSEEESCCCGGGGGCTTCCEEECCSSC--CEEECCG
T ss_pred             cccccccccccccchhhhccccccccccccccchhhhcccc-cccccccccCchhhccCcccceeeccccc--ccccccc
Confidence            48999999999999999998888877888889999999999 777765   77889999999999999997  6667888


Q ss_pred             hhhccCCC-CeEEeeeccch-----hHHHHh---------------hc-cccCCCCCCceEEeeecccCCCCchhhhcCC
Q 036414           84 SLCELHKL-ECLKLANQGKM-----WQITRM---------------IL-SEYKFPPSLTQLSLSNTELIEDPMPTLEKLP  141 (252)
Q Consensus        84 ~l~~l~~L-~~L~l~~~~~~-----~~~~~l---------------~~-~~~~~~~~L~~l~l~~~~~~~~~~~~l~~~~  141 (252)
                      .+..+.++ +.+.+.+ +.+     ..+..+               +| .+..+ ++++.+++.++.+.. .+..++.++
T Consensus       168 ~~~~l~~l~~~l~~~~-n~l~~~~~~~~~~l~~~~l~l~~~~~~~~~~~~~~~~-~~l~~l~~~~~~l~~-~~~~~~~~~  244 (313)
T d1ogqa_         168 SYGSFSKLFTSMTISR-NRLTGKIPPTFANLNLAFVDLSRNMLEGDASVLFGSD-KNTQKIHLAKNSLAF-DLGKVGLSK  244 (313)
T ss_dssp             GGGCCCTTCCEEECCS-SEEEEECCGGGGGCCCSEEECCSSEEEECCGGGCCTT-SCCSEEECCSSEECC-BGGGCCCCT
T ss_pred             cccccccccccccccc-ccccccccccccccccccccccccccccccccccccc-ccccccccccccccc-ccccccccc
Confidence            88888776 5666655 222     110000               34 45566 899999999998874 455688899


Q ss_pred             CCceEEeccCCccCceeeecCCCCCccccEEEecCCcccc-ceeccccccccccceeeccCCCCCCC
Q 036414          142 HLEVLKLKQNSYFERKLACVGCSSFPQLKILHLKSMLWLE-EWTMGAGAMPKLESLILNPCAYLRKL  207 (252)
Q Consensus       142 ~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~-~~~~~~~~l~~L~~L~l~~~~~~~~~  207 (252)
                      +|+.|++++|.+++..+ .. ++++++|++|++++|+ ++ .+| ..+.+++|+.+++++|+.+...
T Consensus       245 ~L~~L~Ls~N~l~g~iP-~~-l~~L~~L~~L~Ls~N~-l~g~iP-~~~~L~~L~~l~l~~N~~l~g~  307 (313)
T d1ogqa_         245 NLNGLDLRNNRIYGTLP-QG-LTQLKFLHSLNVSFNN-LCGEIP-QGGNLQRFDVSAYANNKCLCGS  307 (313)
T ss_dssp             TCCEEECCSSCCEECCC-GG-GGGCTTCCEEECCSSE-EEEECC-CSTTGGGSCGGGTCSSSEEEST
T ss_pred             ccccccCccCeecccCC-hH-HhCCCCCCEEECcCCc-ccccCC-CcccCCCCCHHHhCCCccccCC
Confidence            99999999999875433 24 6789999999999999 77 566 4678999999999999865443

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.72  E-value=3.9e-17  Score=128.78  Aligned_cols=192  Identities=19%  Similarity=0.196  Sum_probs=153.6

Q ss_pred             ccccEEEecCCCCCCCCCcccCCCCCCcEecccCCCCC--ch-hhcCCCCCccEEEeeccCCccccchhHhhhccCCCCe
Q 036414           17 QKLMHLNFGSITLPAPPKNYSSSLKNLIFISALHPSSC--TP-DILSRLPTVQTLRISGDLSHYHSGVSKSLCELHKLEC   93 (252)
Q Consensus        17 ~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~~l~~~~~--~~-~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~   93 (252)
                      ..+.+.+-+++.+. .+|..+.  +++++|+ ++.+.+  ++ ..+..+++|++|++++|.   ...++ .+..+++|+.
T Consensus        10 ~~~~~v~C~~~~L~-~iP~~lp--~~l~~L~-Ls~N~i~~l~~~~f~~l~~L~~L~L~~N~---l~~l~-~~~~l~~L~~   81 (266)
T d1p9ag_          10 ASHLEVNCDKRNLT-ALPPDLP--KDTTILH-LSENLLYTFSLATLMPYTRLTQLNLDRAE---LTKLQ-VDGTLPVLGT   81 (266)
T ss_dssp             TTCCEEECTTSCCS-SCCSCCC--TTCCEEE-CTTSCCSEEEGGGGTTCTTCCEEECTTSC---CCEEE-CCSCCTTCCE
T ss_pred             CCCeEEEccCCCCC-eeCcCcC--cCCCEEE-CcCCcCCCcCHHHhhcccccccccccccc---ccccc-cccccccccc
Confidence            34455566644444 5776654  5799999 999987  34 558899999999999995   34444 3468999999


Q ss_pred             EEeeeccchhHHHHhhc-cccCCCCCCceEEeeecccCCCCchhhhcCCCCceEEeccCCccCceeeecCCCCCccccEE
Q 036414           94 LKLANQGKMWQITRMIL-SEYKFPPSLTQLSLSNTELIEDPMPTLEKLPHLEVLKLKQNSYFERKLACVGCSSFPQLKIL  172 (252)
Q Consensus        94 L~l~~~~~~~~~~~l~~-~~~~~~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L  172 (252)
                      |++++ +.+..    .+ .+..+ ++|++++++++.+.......+..+.+++.|.+++|.+...... . ...++.|+.+
T Consensus        82 L~Ls~-N~l~~----~~~~~~~l-~~L~~L~l~~~~~~~~~~~~~~~l~~l~~L~l~~n~l~~l~~~-~-~~~l~~l~~l  153 (266)
T d1p9ag_          82 LDLSH-NQLQS----LPLLGQTL-PALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPG-L-LTPTPKLEKL  153 (266)
T ss_dssp             EECCS-SCCSS----CCCCTTTC-TTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTT-T-TTTCTTCCEE
T ss_pred             ccccc-ccccc----cccccccc-cccccccccccccceeeccccccccccccccccccccceeccc-c-ccccccchhc
Confidence            99999 56654    55 67777 9999999999998877788888999999999998887653322 3 5678999999


Q ss_pred             EecCCccccceec-cccccccccceeeccCCCCCCChHHHHhccccceeecccCC
Q 036414          173 HLKSMLWLEEWTM-GAGAMPKLESLILNPCAYLRKLPEELWRIKSLCKLELHWPQ  226 (252)
Q Consensus       173 ~l~~~~~l~~~~~-~~~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~l~~~~  226 (252)
                      ++++|+ ++.++. .++.+++|++|++++|... .+|.++..+++|+.|++++.|
T Consensus       154 ~l~~N~-l~~~~~~~~~~l~~L~~L~Ls~N~L~-~lp~~~~~~~~L~~L~L~~Np  206 (266)
T d1p9ag_         154 SLANNN-LTELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNP  206 (266)
T ss_dssp             ECTTSC-CSCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCCCSEEECCSCC
T ss_pred             cccccc-ccccCccccccccccceeecccCCCc-ccChhHCCCCCCCEEEecCCC
Confidence            999999 888754 4678999999999999865 899888889999999999866

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.71  E-value=7.2e-17  Score=129.63  Aligned_cols=107  Identities=21%  Similarity=0.189  Sum_probs=79.9

Q ss_pred             CCCceEEeeecccCCCCchhhhcCCCCceEEeccCCccCceeeecCCCCCccccEEEecCCccccceeccccccccccce
Q 036414          117 PSLTQLSLSNTELIEDPMPTLEKLPHLEVLKLKQNSYFERKLACVGCSSFPQLKILHLKSMLWLEEWTMGAGAMPKLESL  196 (252)
Q Consensus       117 ~~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L  196 (252)
                      ++|+.+++.++......+..+..+++++.|++++|.+...... . ..++++|++|++++|+ +++++..+..+++|++|
T Consensus       171 ~~L~~L~l~~n~~~~~~~~~~~~~~~l~~L~~s~n~l~~~~~~-~-~~~l~~L~~L~L~~N~-L~~lp~~l~~l~~L~~L  247 (305)
T d1xkua_         171 PSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNG-S-LANTPHLRELHLNNNK-LVKVPGGLADHKYIQVV  247 (305)
T ss_dssp             TTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTT-T-GGGSTTCCEEECCSSC-CSSCCTTTTTCSSCCEE
T ss_pred             CccCEEECCCCcCCCCChhHhhccccccccccccccccccccc-c-ccccccceeeeccccc-ccccccccccccCCCEE
Confidence            7788888887777766677778888888888887777553222 2 4578889999999987 88888778888999999


Q ss_pred             eeccCCCCCCChH-------HHHhccccceeecccCCH
Q 036414          197 ILNPCAYLRKLPE-------ELWRIKSLCKLELHWPQP  227 (252)
Q Consensus       197 ~l~~~~~~~~~p~-------~l~~l~~L~~L~l~~~~~  227 (252)
                      ++++|.+. .++.       .....++|+.|++.+++.
T Consensus       248 ~Ls~N~i~-~i~~~~f~~~~~~~~~~~L~~L~L~~N~~  284 (305)
T d1xkua_         248 YLHNNNIS-AIGSNDFCPPGYNTKKASYSGVSLFSNPV  284 (305)
T ss_dssp             ECCSSCCC-CCCTTSSSCSSCCTTSCCCSEEECCSSSS
T ss_pred             ECCCCccC-ccChhhccCcchhcccCCCCEEECCCCcC
Confidence            99888643 4432       234567888898988873

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.69  E-value=8.8e-18  Score=133.82  Aligned_cols=179  Identities=17%  Similarity=0.178  Sum_probs=74.1

Q ss_pred             ccccEEEecCCCCCCC-CCcccCCCCCCcEecccCCCCC---chhhcCCCCCccEEEeeccCCccccchhHhhhccCCCC
Q 036414           17 QKLMHLNFGSITLPAP-PKNYSSSLKNLIFISALHPSSC---TPDILSRLPTVQTLRISGDLSHYHSGVSKSLCELHKLE   92 (252)
Q Consensus        17 ~~L~~L~l~~~~~~~~-~~~~l~~l~~L~~L~~l~~~~~---~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~   92 (252)
                      .+|++||++++..... +...+..+++|++|. +..+..   .+..++.+++|++|++++|.......+......+++|+
T Consensus        46 ~~L~~LdLs~~~i~~~~l~~l~~~c~~L~~L~-L~~~~l~~~~~~~l~~~~~L~~L~Ls~c~~itd~~l~~l~~~~~~L~  124 (284)
T d2astb2          46 FRVQHMDLSNSVIEVSTLHGILSQCSKLQNLS-LEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLD  124 (284)
T ss_dssp             BCCCEEECTTCEECHHHHHHHHTTBCCCSEEE-CTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCC
T ss_pred             CCCCEEECCCCccCHHHHHHHHHhCCCccccc-ccccCCCcHHHHHHhcCCCCcCccccccccccccccchhhHHHHhcc
Confidence            3455555554333221 222344455555555 444433   23334455555555555543222222333334455555


Q ss_pred             eEEeeeccch--hHHHHhhc-cccCCCCCCceEEeeecc--cCCCCch-hhhcCCCCceEEeccCCccCceeeecCCCCC
Q 036414           93 CLKLANQGKM--WQITRMIL-SEYKFPPSLTQLSLSNTE--LIEDPMP-TLEKLPHLEVLKLKQNSYFERKLACVGCSSF  166 (252)
Q Consensus        93 ~L~l~~~~~~--~~~~~l~~-~~~~~~~~L~~l~l~~~~--~~~~~~~-~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~  166 (252)
                      +|++++|..+  ..    +. .+...+++|+.++++++.  ++..... .+..+++|++|++++|.......... ...+
T Consensus       125 ~L~ls~c~~~~~~~----~~~~~~~~~~~L~~L~l~~~~~~i~~~~l~~l~~~~~~L~~L~L~~~~~itd~~~~~-l~~~  199 (284)
T d2astb2         125 ELNLSWCFDFTEKH----VQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQE-FFQL  199 (284)
T ss_dssp             EEECCCCTTCCHHH----HHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGG-GGGC
T ss_pred             cccccccccccccc----chhhhcccccccchhhhcccccccccccccccccccccccccccccccCCCchhhhh-hccc
Confidence            5555553332  11    11 222222455555555431  2211121 22345555555555443211111112 3345


Q ss_pred             ccccEEEecCCccccce-eccccccccccceeeccC
Q 036414          167 PQLKILHLKSMLWLEEW-TMGAGAMPKLESLILNPC  201 (252)
Q Consensus       167 ~~L~~L~l~~~~~l~~~-~~~~~~l~~L~~L~l~~~  201 (252)
                      ++|++|++++|..+++- ...++.+|+|+.|++.+|
T Consensus       200 ~~L~~L~L~~C~~i~~~~l~~L~~~~~L~~L~l~~~  235 (284)
T d2astb2         200 NYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI  235 (284)
T ss_dssp             TTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS
T ss_pred             CcCCEEECCCCCCCChHHHHHHhcCCCCCEEeeeCC
Confidence            55555555554434321 122344555555555555

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.69  E-value=6.2e-17  Score=128.80  Aligned_cols=192  Identities=18%  Similarity=0.140  Sum_probs=153.2

Q ss_pred             CCCCccccch-HHHhhccccEEEecCCCCCCCCCcccCCCCCCcEecccCCCCC---chhhcCCCCCccEEEeeccCCcc
Q 036414            2 PSSYIDHSSE-DIWMMQKLMHLNFGSITLPAPPKNYSSSLKNLIFISALHPSSC---TPDILSRLPTVQTLRISGDLSHY   77 (252)
Q Consensus         2 ~~~~l~~lp~-~i~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~~l~~~~~---~~~~l~~l~~L~~L~l~~~~~~~   77 (252)
                      -++.|+++|. ++..+++|++|+++++.+....+..+..+..++.+.....+..   .+..+..+++|++|+++.+.  .
T Consensus        40 s~N~i~~i~~~~f~~l~~L~~L~ls~n~l~~i~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~l~~L~~L~l~~n~--~  117 (284)
T d1ozna_          40 HGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCG--L  117 (284)
T ss_dssp             TTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEEECTTSC--C
T ss_pred             cCCcCCCCCHHHhhccccccccccccccccccccccccccccccccccccccccccccchhhcccccCCEEecCCcc--c
Confidence            3578999987 5899999999999988777666666778888888872333333   46668899999999999996  4


Q ss_pred             ccchhHhhhccCCCCeEEeeeccchhHHHHhhc--cccCCCCCCceEEeeecccCCCCchhhhcCCCCceEEeccCCccC
Q 036414           78 HSGVSKSLCELHKLECLKLANQGKMWQITRMIL--SEYKFPPSLTQLSLSNTELIEDPMPTLEKLPHLEVLKLKQNSYFE  155 (252)
Q Consensus        78 ~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~l~~--~~~~~~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~  155 (252)
                      ....+..+...++|+.+++.+ +.+..    ++  .+..+ ++|+.|++++|++....+.++..+++|+.+.+++|.+..
T Consensus       118 ~~~~~~~~~~~~~L~~l~l~~-N~l~~----i~~~~f~~~-~~L~~L~l~~N~l~~l~~~~f~~l~~L~~l~l~~N~l~~  191 (284)
T d1ozna_         118 QELGPGLFRGLAALQYLYLQD-NALQA----LPDDTFRDL-GNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAH  191 (284)
T ss_dssp             CCCCTTTTTTCTTCCEEECCS-SCCCC----CCTTTTTTC-TTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCE
T ss_pred             ccccccccchhcccchhhhcc-ccccc----cChhHhccc-cchhhcccccCcccccchhhhccccccchhhhhhccccc
Confidence            444455667789999999998 66655    55  56677 899999999999987777888999999999999888875


Q ss_pred             ceeeecCCCCCccccEEEecCCcccccee-ccccccccccceeeccCCCC
Q 036414          156 RKLACVGCSSFPQLKILHLKSMLWLEEWT-MGAGAMPKLESLILNPCAYL  204 (252)
Q Consensus       156 ~~~~~~~~~~~~~L~~L~l~~~~~l~~~~-~~~~~l~~L~~L~l~~~~~~  204 (252)
                      .. +.. +.++++|++|++++|. +.+++ ..++.+++|+.|++++|+..
T Consensus       192 i~-~~~-f~~l~~L~~L~l~~N~-i~~~~~~~~~~~~~L~~L~l~~N~l~  238 (284)
T d1ozna_         192 VH-PHA-FRDLGRLMTLYLFANN-LSALPTEALAPLRALQYLRLNDNPWV  238 (284)
T ss_dssp             EC-TTT-TTTCTTCCEEECCSSC-CSCCCHHHHTTCTTCCEEECCSSCEE
T ss_pred             cC-hhH-hhhhhhcccccccccc-cccccccccccccccCEEEecCCCCC
Confidence            33 334 7789999999999999 77664 45678999999999998754

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.69  E-value=3.5e-16  Score=120.34  Aligned_cols=189  Identities=16%  Similarity=0.198  Sum_probs=148.2

Q ss_pred             HHhhccccEEEecCCCCCCCCCcccCCCCCCcEecccCCCCC-chhhcCCCCCccEEEeeccCCccccchhHhhhccCCC
Q 036414           13 IWMMQKLMHLNFGSITLPAPPKNYSSSLKNLIFISALHPSSC-TPDILSRLPTVQTLRISGDLSHYHSGVSKSLCELHKL   91 (252)
Q Consensus        13 i~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~~l~~~~~-~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L   91 (252)
                      +..+.+|+.|++.+|.+. .+ .++..+++|++|+ ++.+.+ ....+..+++++.++++++.   ...++ .+..+++|
T Consensus        37 ~~~l~~L~~L~l~~~~i~-~l-~~l~~l~~L~~L~-ls~n~i~~~~~l~~l~~l~~l~~~~n~---~~~i~-~l~~l~~L  109 (227)
T d1h6ua2          37 QADLDGITTLSAFGTGVT-TI-EGVQYLNNLIGLE-LKDNQITDLAPLKNLTKITELELSGNP---LKNVS-AIAGLQSI  109 (227)
T ss_dssp             HHHHHTCCEEECTTSCCC-CC-TTGGGCTTCCEEE-CCSSCCCCCGGGTTCCSCCEEECCSCC---CSCCG-GGTTCTTC
T ss_pred             HHHcCCcCEEECCCCCCC-cc-hhHhcCCCCcEee-cCCceeecccccccccccccccccccc---ccccc-cccccccc
Confidence            467889999999977654 45 4589999999999 888877 45568999999999999885   33333 57789999


Q ss_pred             CeEEeeeccchhHHHHhhccccCCCCCCceEEeeecccCCCCchhhhcCCCCceEEeccCCccCceeeecCCCCCccccE
Q 036414           92 ECLKLANQGKMWQITRMILSEYKFPPSLTQLSLSNTELIEDPMPTLEKLPHLEVLKLKQNSYFERKLACVGCSSFPQLKI  171 (252)
Q Consensus        92 ~~L~l~~~~~~~~~~~l~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~  171 (252)
                      +.+++.++ ....    ++.+... +.+..+.+.++.+..  ...+..+++|++|.+++|......   . .+++++|++
T Consensus       110 ~~l~l~~~-~~~~----~~~~~~~-~~~~~l~~~~~~~~~--~~~~~~~~~L~~L~l~~n~~~~~~---~-l~~l~~L~~  177 (227)
T d1h6ua2         110 KTLDLTST-QITD----VTPLAGL-SNLQVLYLDLNQITN--ISPLAGLTNLQYLSIGNAQVSDLT---P-LANLSKLTT  177 (227)
T ss_dssp             CEEECTTS-CCCC----CGGGTTC-TTCCEEECCSSCCCC--CGGGGGCTTCCEEECCSSCCCCCG---G-GTTCTTCCE
T ss_pred             cccccccc-cccc----cchhccc-cchhhhhchhhhhch--hhhhccccccccccccccccccch---h-hccccccee
Confidence            99999874 3322    3344555 888999998887763  334678899999999888765421   2 568999999


Q ss_pred             EEecCCccccceeccccccccccceeeccCCCCCCChHHHHhccccceeeccc
Q 036414          172 LHLKSMLWLEEWTMGAGAMPKLESLILNPCAYLRKLPEELWRIKSLCKLELHW  224 (252)
Q Consensus       172 L~l~~~~~l~~~~~~~~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~l~~  224 (252)
                      |++++|+ +++++. ++.+++|+.|++++|..+ .++ .+.++++|+.|++++
T Consensus       178 L~Ls~n~-l~~l~~-l~~l~~L~~L~Ls~N~lt-~i~-~l~~l~~L~~L~lsn  226 (227)
T d1h6ua2         178 LKADDNK-ISDISP-LASLPNLIEVHLKNNQIS-DVS-PLANTSNLFIVTLTN  226 (227)
T ss_dssp             EECCSSC-CCCCGG-GGGCTTCCEEECTTSCCC-BCG-GGTTCTTCCEEEEEE
T ss_pred             cccCCCc-cCCChh-hcCCCCCCEEECcCCcCC-CCc-ccccCCCCCEEEeeC
Confidence            9999998 888865 788999999999999754 566 378899999999864

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.66  E-value=1.6e-15  Score=124.99  Aligned_cols=107  Identities=21%  Similarity=0.197  Sum_probs=62.6

Q ss_pred             ccCCCCCCceEEeeecccCCCCchhhhcCCCCceEEeccCCccCcee-------------------eecCCCCCccccEE
Q 036414          112 EYKFPPSLTQLSLSNTELIEDPMPTLEKLPHLEVLKLKQNSYFERKL-------------------ACVGCSSFPQLKIL  172 (252)
Q Consensus       112 ~~~~~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~-------------------~~~~~~~~~~L~~L  172 (252)
                      +..+ ++|+.+++.+|.+++..  .++.+++|++++++++.+.....                   ... ...+++++.|
T Consensus       237 l~~l-~~L~~L~l~~n~l~~~~--~~~~~~~L~~L~l~~~~l~~~~~~~~~~~l~~l~~~~n~l~~~~~-~~~~~~l~~L  312 (384)
T d2omza2         237 LASL-TNLTDLDLANNQISNLA--PLSGLTKLTELKLGANQISNISPLAGLTALTNLELNENQLEDISP-ISNLKNLTYL  312 (384)
T ss_dssp             GGGC-TTCSEEECCSSCCCCCG--GGTTCTTCSEEECCSSCCCCCGGGTTCTTCSEEECCSSCCSCCGG-GGGCTTCSEE
T ss_pred             hhcc-cccchhccccCccCCCC--cccccccCCEeeccCcccCCCCccccccccccccccccccccccc-cchhcccCeE
Confidence            3344 55555555555554222  24555666666665554332100                   001 2345567777


Q ss_pred             EecCCccccceeccccccccccceeeccCCCCCCChHHHHhccccceeecccCC
Q 036414          173 HLKSMLWLEEWTMGAGAMPKLESLILNPCAYLRKLPEELWRIKSLCKLELHWPQ  226 (252)
Q Consensus       173 ~l~~~~~l~~~~~~~~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~l~~~~  226 (252)
                      ++++|. +++++. +..+++|++|++++|... .++ .+..+++|++|+++++.
T Consensus       313 ~ls~n~-l~~l~~-l~~l~~L~~L~L~~n~l~-~l~-~l~~l~~L~~L~l~~N~  362 (384)
T d2omza2         313 TLYFNN-ISDISP-VSSLTKLQRLFFANNKVS-DVS-SLANLTNINWLSAGHNQ  362 (384)
T ss_dssp             ECCSSC-CSCCGG-GGGCTTCCEEECCSSCCC-CCG-GGGGCTTCCEEECCSSC
T ss_pred             ECCCCC-CCCCcc-cccCCCCCEEECCCCCCC-CCh-hHcCCCCCCEEECCCCc
Confidence            777766 666543 567788888888888654 455 46778888888887764

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.66  E-value=4.3e-16  Score=124.98  Aligned_cols=206  Identities=17%  Similarity=0.154  Sum_probs=142.1

Q ss_pred             CCccccchHHHhhccccEEEecCCCCCCCCCcccCCCCCCcEecccCCCCC---chhhcCCCCCccEEEeeccCCccccc
Q 036414            4 SYIDHSSEDIWMMQKLMHLNFGSITLPAPPKNYSSSLKNLIFISALHPSSC---TPDILSRLPTVQTLRISGDLSHYHSG   80 (252)
Q Consensus         4 ~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~~l~~~~~---~~~~l~~l~~L~~L~l~~~~~~~~~~   80 (252)
                      .+++++|..+.  +++++|++++|.+....+..+.++++|++|+ +..+..   .+..+..+++|++|++++|.   ...
T Consensus        20 ~~L~~lP~~l~--~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~-l~~n~~~~i~~~~f~~l~~L~~L~l~~n~---l~~   93 (305)
T d1xkua_          20 LGLEKVPKDLP--PDTALLDLQNNKITEIKDGDFKNLKNLHTLI-LINNKISKISPGAFAPLVKLERLYLSKNQ---LKE   93 (305)
T ss_dssp             SCCCSCCCSCC--TTCCEEECCSSCCCCBCTTTTTTCTTCCEEE-CCSSCCCCBCTTTTTTCTTCCEEECCSSC---CSB
T ss_pred             CCCCccCCCCC--CCCCEEECcCCcCCCcChhHhhccccccccc-cccccccccchhhhhCCCccCEecccCCc---cCc
Confidence            45788887664  5788888887665433334678888888888 777665   35557788888888888874   233


Q ss_pred             hhHhhhccCCCCeEEeeeccchhH-----H---HH---h------------hc-cccCCCCCCceEEeeecccCCCCchh
Q 036414           81 VSKSLCELHKLECLKLANQGKMWQ-----I---TR---M------------IL-SEYKFPPSLTQLSLSNTELIEDPMPT  136 (252)
Q Consensus        81 ~~~~l~~l~~L~~L~l~~~~~~~~-----~---~~---l------------~~-~~~~~~~~L~~l~l~~~~~~~~~~~~  136 (252)
                      +|..  ....++.+....+ .+..     +   ..   +            .+ .+..+ ++|+++++.+|.+... +..
T Consensus        94 l~~~--~~~~l~~L~~~~n-~l~~l~~~~~~~~~~~~~l~~~~n~~~~~~~~~~~~~~l-~~L~~l~l~~n~l~~l-~~~  168 (305)
T d1xkua_          94 LPEK--MPKTLQELRVHEN-EITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGM-KKLSYIRIADTNITTI-PQG  168 (305)
T ss_dssp             CCSS--CCTTCCEEECCSS-CCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGC-TTCCEEECCSSCCCSC-CSS
T ss_pred             Cccc--hhhhhhhhhcccc-chhhhhhhhhhccccccccccccccccccCCCccccccc-cccCccccccCCcccc-Ccc
Confidence            3322  1233444444331 1100     0   00   0            12 44556 8899999999887743 322


Q ss_pred             hhcCCCCceEEeccCCccCceeeecCCCCCccccEEEecCCccccce-eccccccccccceeeccCCCCCCChHHHHhcc
Q 036414          137 LEKLPHLEVLKLKQNSYFERKLACVGCSSFPQLKILHLKSMLWLEEW-TMGAGAMPKLESLILNPCAYLRKLPEELWRIK  215 (252)
Q Consensus       137 l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~-~~~~~~l~~L~~L~l~~~~~~~~~p~~l~~l~  215 (252)
                        ..++|++|+++++....... .. +.+++.++.|++++|. +.++ +..+..+++|++|++++|.. ..+|.++..++
T Consensus       169 --~~~~L~~L~l~~n~~~~~~~-~~-~~~~~~l~~L~~s~n~-l~~~~~~~~~~l~~L~~L~L~~N~L-~~lp~~l~~l~  242 (305)
T d1xkua_         169 --LPPSLTELHLDGNKITKVDA-AS-LKGLNNLAKLGLSFNS-ISAVDNGSLANTPHLRELHLNNNKL-VKVPGGLADHK  242 (305)
T ss_dssp             --CCTTCSEEECTTSCCCEECT-GG-GTTCTTCCEEECCSSC-CCEECTTTGGGSTTCCEEECCSSCC-SSCCTTTTTCS
T ss_pred             --cCCccCEEECCCCcCCCCCh-hH-hhcccccccccccccc-ccccccccccccccceeeecccccc-ccccccccccc
Confidence              36789999998877654322 23 6688999999999998 7877 44567899999999999975 47888899999


Q ss_pred             ccceeecccCC
Q 036414          216 SLCKLELHWPQ  226 (252)
Q Consensus       216 ~L~~L~l~~~~  226 (252)
                      +|++|+++++.
T Consensus       243 ~L~~L~Ls~N~  253 (305)
T d1xkua_         243 YIQVVYLHNNN  253 (305)
T ss_dssp             SCCEEECCSSC
T ss_pred             CCCEEECCCCc
Confidence            99999999864

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.65  E-value=1.1e-15  Score=117.59  Aligned_cols=177  Identities=18%  Similarity=0.220  Sum_probs=138.7

Q ss_pred             CCCCccccchHHHhhccccEEEecCCCCCCCCCcccCCCCCCcEecccCCCCC-chhhcCCCCCccEEEeeccCCccccc
Q 036414            2 PSSYIDHSSEDIWMMQKLMHLNFGSITLPAPPKNYSSSLKNLIFISALHPSSC-TPDILSRLPTVQTLRISGDLSHYHSG   80 (252)
Q Consensus         2 ~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~~l~~~~~-~~~~l~~l~~L~~L~l~~~~~~~~~~   80 (252)
                      -++.|+.++ ++..+++|++|++++|.+.. ++ .+.++++++.+. ++.+.. ....+..+++|+.++++++.  . ..
T Consensus        49 ~~~~i~~l~-~l~~l~~L~~L~ls~n~i~~-~~-~l~~l~~l~~l~-~~~n~~~~i~~l~~l~~L~~l~l~~~~--~-~~  121 (227)
T d1h6ua2          49 FGTGVTTIE-GVQYLNNLIGLELKDNQITD-LA-PLKNLTKITELE-LSGNPLKNVSAIAGLQSIKTLDLTSTQ--I-TD  121 (227)
T ss_dssp             TTSCCCCCT-TGGGCTTCCEEECCSSCCCC-CG-GGTTCCSCCEEE-CCSCCCSCCGGGTTCTTCCEEECTTSC--C-CC
T ss_pred             CCCCCCcch-hHhcCCCCcEeecCCceeec-cc-cccccccccccc-ccccccccccccccccccccccccccc--c-cc
Confidence            457888885 69999999999999776653 33 389999999999 887766 55678899999999999885  2 22


Q ss_pred             hhHhhhccCCCCeEEeeeccchhHHHHhhccccCCCCCCceEEeeecccCCCCchhhhcCCCCceEEeccCCccCceeee
Q 036414           81 VSKSLCELHKLECLKLANQGKMWQITRMILSEYKFPPSLTQLSLSNTELIEDPMPTLEKLPHLEVLKLKQNSYFERKLAC  160 (252)
Q Consensus        81 ~~~~l~~l~~L~~L~l~~~~~~~~~~~l~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~  160 (252)
                       ...+...+.++.+.+.+ ..+..    ...+... ++|+.+++.+|.+...  ..++.+++|+.|++++|.+.+..   
T Consensus       122 -~~~~~~~~~~~~l~~~~-~~~~~----~~~~~~~-~~L~~L~l~~n~~~~~--~~l~~l~~L~~L~Ls~n~l~~l~---  189 (227)
T d1h6ua2         122 -VTPLAGLSNLQVLYLDL-NQITN----ISPLAGL-TNLQYLSIGNAQVSDL--TPLANLSKLTTLKADDNKISDIS---  189 (227)
T ss_dssp             -CGGGTTCTTCCEEECCS-SCCCC----CGGGGGC-TTCCEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCCCCG---
T ss_pred             -cchhccccchhhhhchh-hhhch----hhhhccc-cccccccccccccccc--hhhcccccceecccCCCccCCCh---
Confidence             22356678899999877 44433    2355666 8999999999988633  34788999999999998876522   


Q ss_pred             cCCCCCccccEEEecCCccccceeccccccccccceeecc
Q 036414          161 VGCSSFPQLKILHLKSMLWLEEWTMGAGAMPKLESLILNP  200 (252)
Q Consensus       161 ~~~~~~~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~  200 (252)
                      . +.++++|++|++++|+ +++++. ++.+++|+.|++++
T Consensus       190 ~-l~~l~~L~~L~Ls~N~-lt~i~~-l~~l~~L~~L~lsn  226 (227)
T d1h6ua2         190 P-LASLPNLIEVHLKNNQ-ISDVSP-LANTSNLFIVTLTN  226 (227)
T ss_dssp             G-GGGCTTCCEEECTTSC-CCBCGG-GTTCTTCCEEEEEE
T ss_pred             h-hcCCCCCCEEECcCCc-CCCCcc-cccCCCCCEEEeeC
Confidence            2 5588999999999998 998875 78999999999874

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.65  E-value=1.3e-15  Score=115.81  Aligned_cols=165  Identities=26%  Similarity=0.303  Sum_probs=110.3

Q ss_pred             CCCCCcEecccCCCCC-chhhcCCCCCccEEEeeccCCccccchhHhhhccCCCCeEEeeeccchhHHHHhhccccCCCC
Q 036414           39 SLKNLIFISALHPSSC-TPDILSRLPTVQTLRISGDLSHYHSGVSKSLCELHKLECLKLANQGKMWQITRMILSEYKFPP  117 (252)
Q Consensus        39 ~l~~L~~L~~l~~~~~-~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~l~~~~~~~~~  117 (252)
                      ++.+|+.|+ ++.+.. ...++..+++|++|++++|.   ...++ .+..+++|++|++.+ +.+.+    ++.+..+ +
T Consensus        44 ~L~~L~~L~-l~~~~i~~l~~l~~l~~L~~L~L~~n~---i~~l~-~~~~l~~L~~L~l~~-n~i~~----l~~l~~l-~  112 (210)
T d1h6ta2          44 ELNSIDQII-ANNSDIKSVQGIQYLPNVTKLFLNGNK---LTDIK-PLANLKNLGWLFLDE-NKVKD----LSSLKDL-K  112 (210)
T ss_dssp             HHHTCCEEE-CTTSCCCCCTTGGGCTTCCEEECCSSC---CCCCG-GGTTCTTCCEEECCS-SCCCC----GGGGTTC-T
T ss_pred             HhcCccEEE-CcCCCCCCchhHhhCCCCCEEeCCCcc---ccCcc-ccccCcccccccccc-ccccc----ccccccc-c
Confidence            455677777 666655 44456677777777777774   23333 356677777777776 45555    5566666 7


Q ss_pred             CCceEEeeecccCCCCchhhhcCCCCceEEeccCCccCceeeecCCCCCccccEEEecCCccccceecccccccccccee
Q 036414          118 SLTQLSLSNTELIEDPMPTLEKLPHLEVLKLKQNSYFERKLACVGCSSFPQLKILHLKSMLWLEEWTMGAGAMPKLESLI  197 (252)
Q Consensus       118 ~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~  197 (252)
                      +|+.+++.+|.+.  ....+..+++++.++++++.+....   . ...+++|+++++++|+ +++++. ++.+++|+.|+
T Consensus       113 ~L~~L~l~~~~~~--~~~~l~~l~~l~~l~~~~n~l~~~~---~-~~~l~~L~~l~l~~n~-l~~i~~-l~~l~~L~~L~  184 (210)
T d1h6ta2         113 KLKSLSLEHNGIS--DINGLVHLPQLESLYLGNNKITDIT---V-LSRLTKLDTLSLEDNQ-ISDIVP-LAGLTKLQNLY  184 (210)
T ss_dssp             TCCEEECTTSCCC--CCGGGGGCTTCCEEECCSSCCCCCG---G-GGGCTTCSEEECCSSC-CCCCGG-GTTCTTCCEEE
T ss_pred             ccccccccccccc--ccccccccccccccccccccccccc---c-cccccccccccccccc-cccccc-ccCCCCCCEEE
Confidence            7888888777665  2345667778888888777665422   1 3467778888888877 666654 66778888888


Q ss_pred             eccCCCCCCChHHHHhccccceeeccc
Q 036414          198 LNPCAYLRKLPEELWRIKSLCKLELHW  224 (252)
Q Consensus       198 l~~~~~~~~~p~~l~~l~~L~~L~l~~  224 (252)
                      +++|... .++ .+..+++|++|++++
T Consensus       185 Ls~N~i~-~l~-~l~~l~~L~~L~Ls~  209 (210)
T d1h6ta2         185 LSKNHIS-DLR-ALAGLKNLDVLELFS  209 (210)
T ss_dssp             CCSSCCC-BCG-GGTTCTTCSEEEEEE
T ss_pred             CCCCCCC-CCh-hhcCCCCCCEEEccC
Confidence            8887653 565 467778888887753

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.65  E-value=1.8e-15  Score=113.95  Aligned_cols=162  Identities=19%  Similarity=0.263  Sum_probs=107.1

Q ss_pred             CCCCCCcEecccCCCCC-chhhcCCCCCccEEEeeccCCccccchhHhhhccCCCCeEEeeeccchhHHHHhhccccCCC
Q 036414           38 SSLKNLIFISALHPSSC-TPDILSRLPTVQTLRISGDLSHYHSGVSKSLCELHKLECLKLANQGKMWQITRMILSEYKFP  116 (252)
Q Consensus        38 ~~l~~L~~L~~l~~~~~-~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~l~~~~~~~~  116 (252)
                      .++.++++|+ +..+.. ..+++..+++|++|++++|.   ...++. +.++++|++|++.+ +.+..    ++.+..+ 
T Consensus        37 ~~l~~l~~L~-l~~~~i~~l~~l~~l~nL~~L~Ls~N~---l~~~~~-l~~l~~L~~L~l~~-n~~~~----~~~l~~l-  105 (199)
T d2omxa2          37 TDLDQVTTLQ-ADRLGIKSIDGVEYLNNLTQINFSNNQ---LTDITP-LKNLTKLVDILMNN-NQIAD----ITPLANL-  105 (199)
T ss_dssp             HHHTTCCEEE-CTTSCCCCCTTGGGCTTCCEEECCSSC---CCCCGG-GTTCTTCCEEECCS-SCCCC----CGGGTTC-
T ss_pred             HHhcCCCEEE-CCCCCCCCccccccCCCcCcCcccccc---ccCccc-ccCCcccccccccc-ccccc----ccccccc-
Confidence            4556677777 666655 44556677777777777774   233332 67777788887777 44434    4556666 


Q ss_pred             CCCceEEeeecccCCCCchhhhcCCCCceEEeccCCccCceeeecCCCCCccccEEEecCCccccceeccccccccccce
Q 036414          117 PSLTQLSLSNTELIEDPMPTLEKLPHLEVLKLKQNSYFERKLACVGCSSFPQLKILHLKSMLWLEEWTMGAGAMPKLESL  196 (252)
Q Consensus       117 ~~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L  196 (252)
                      ++|+.+++.++....  ...+..+++|+.+++++|.+...  . . ...+++|+.|++.+|. +++++. ++.+++|+.|
T Consensus       106 ~~L~~L~l~~~~~~~--~~~~~~l~~L~~L~l~~n~l~~~--~-~-l~~~~~L~~L~l~~n~-l~~l~~-l~~l~~L~~L  177 (199)
T d2omxa2         106 TNLTGLTLFNNQITD--IDPLKNLTNLNRLELSSNTISDI--S-A-LSGLTSLQQLNFSSNQ-VTDLKP-LANLTTLERL  177 (199)
T ss_dssp             TTCSEEECCSSCCCC--CGGGTTCTTCSEEECCSSCCCCC--G-G-GTTCTTCSEEECCSSC-CCCCGG-GTTCTTCCEE
T ss_pred             ccccccccccccccc--ccccchhhhhHHhhhhhhhhccc--c-c-cccccccccccccccc-ccCCcc-ccCCCCCCEE
Confidence            788888887776653  23466778888888877766432  1 2 4567788888888877 776654 6677888888


Q ss_pred             eeccCCCCCCChHHHHhcccccee
Q 036414          197 ILNPCAYLRKLPEELWRIKSLCKL  220 (252)
Q Consensus       197 ~l~~~~~~~~~p~~l~~l~~L~~L  220 (252)
                      ++++|... .++ .+..+++|++|
T Consensus       178 ~ls~N~i~-~i~-~l~~L~~L~~L  199 (199)
T d2omxa2         178 DISSNKVS-DIS-VLAKLTNLESL  199 (199)
T ss_dssp             ECCSSCCC-CCG-GGGGCTTCSEE
T ss_pred             ECCCCCCC-CCc-cccCCCCCCcC
Confidence            88887653 454 35667777664

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.62  E-value=1.4e-15  Score=115.60  Aligned_cols=166  Identities=19%  Similarity=0.237  Sum_probs=133.8

Q ss_pred             HhhccccEEEecCCCCCCCCCcccCCCCCCcEecccCCCCC-chhhcCCCCCccEEEeeccCCccccchhHhhhccCCCC
Q 036414           14 WMMQKLMHLNFGSITLPAPPKNYSSSLKNLIFISALHPSSC-TPDILSRLPTVQTLRISGDLSHYHSGVSKSLCELHKLE   92 (252)
Q Consensus        14 ~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~~l~~~~~-~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~   92 (252)
                      ..+..|++|+++++.+. .++ ++..+++|++|+ ++.+.+ ..+.++.+++|+.|++++|.   ...++ .+..+++|+
T Consensus        43 ~~L~~L~~L~l~~~~i~-~l~-~l~~l~~L~~L~-L~~n~i~~l~~~~~l~~L~~L~l~~n~---i~~l~-~l~~l~~L~  115 (210)
T d1h6ta2          43 NELNSIDQIIANNSDIK-SVQ-GIQYLPNVTKLF-LNGNKLTDIKPLANLKNLGWLFLDENK---VKDLS-SLKDLKKLK  115 (210)
T ss_dssp             HHHHTCCEEECTTSCCC-CCT-TGGGCTTCCEEE-CCSSCCCCCGGGTTCTTCCEEECCSSC---CCCGG-GGTTCTTCC
T ss_pred             HHhcCccEEECcCCCCC-Cch-hHhhCCCCCEEe-CCCccccCccccccCcccccccccccc---ccccc-ccccccccc
Confidence            45788999999966554 333 488999999999 999887 44467899999999999994   44555 578899999


Q ss_pred             eEEeeeccchhHHHHhhccccCCCCCCceEEeeecccCCCCchhhhcCCCCceEEeccCCccCceeeecCCCCCccccEE
Q 036414           93 CLKLANQGKMWQITRMILSEYKFPPSLTQLSLSNTELIEDPMPTLEKLPHLEVLKLKQNSYFERKLACVGCSSFPQLKIL  172 (252)
Q Consensus        93 ~L~l~~~~~~~~~~~l~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L  172 (252)
                      .+++.+ +.+..    ++.+..+ ++++.++++++.++.  +..+..+++|+.+++++|.+.+.  . . +.++++|++|
T Consensus       116 ~L~l~~-~~~~~----~~~l~~l-~~l~~l~~~~n~l~~--~~~~~~l~~L~~l~l~~n~l~~i--~-~-l~~l~~L~~L  183 (210)
T d1h6ta2         116 SLSLEH-NGISD----INGLVHL-PQLESLYLGNNKITD--ITVLSRLTKLDTLSLEDNQISDI--V-P-LAGLTKLQNL  183 (210)
T ss_dssp             EEECTT-SCCCC----CGGGGGC-TTCCEEECCSSCCCC--CGGGGGCTTCSEEECCSSCCCCC--G-G-GTTCTTCCEE
T ss_pred             cccccc-ccccc----ccccccc-ccccccccccccccc--ccccccccccccccccccccccc--c-c-ccCCCCCCEE
Confidence            999988 44444    5567777 999999999998873  44577899999999999887652  1 2 5689999999


Q ss_pred             EecCCccccceeccccccccccceeecc
Q 036414          173 HLKSMLWLEEWTMGAGAMPKLESLILNP  200 (252)
Q Consensus       173 ~l~~~~~l~~~~~~~~~l~~L~~L~l~~  200 (252)
                      ++++|+ +++++. +..+++|+.|++++
T Consensus       184 ~Ls~N~-i~~l~~-l~~l~~L~~L~Ls~  209 (210)
T d1h6ta2         184 YLSKNH-ISDLRA-LAGLKNLDVLELFS  209 (210)
T ss_dssp             ECCSSC-CCBCGG-GTTCTTCSEEEEEE
T ss_pred             ECCCCC-CCCChh-hcCCCCCCEEEccC
Confidence            999998 888874 78899999999975

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.62  E-value=5.2e-15  Score=121.87  Aligned_cols=194  Identities=20%  Similarity=0.203  Sum_probs=152.4

Q ss_pred             cchHHHhhccccEEEecCCCCCCCCCcccCCCCCCcEecccCCCCC-chhhcCCCCCccEEEeeccCCccccchhHhhhc
Q 036414            9 SSEDIWMMQKLMHLNFGSITLPAPPKNYSSSLKNLIFISALHPSSC-TPDILSRLPTVQTLRISGDLSHYHSGVSKSLCE   87 (252)
Q Consensus         9 lp~~i~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~~l~~~~~-~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~   87 (252)
                      .+.....+++++.++++++......|  ...+++|+.|+ ++.+.. .++.+..+++|+.++++++.   ...++ .+..
T Consensus       189 ~~~~~~~l~~~~~l~l~~n~i~~~~~--~~~~~~L~~L~-l~~n~l~~~~~l~~l~~L~~L~l~~n~---l~~~~-~~~~  261 (384)
T d2omza2         189 DISVLAKLTNLESLIATNNQISDITP--LGILTNLDELS-LNGNQLKDIGTLASLTNLTDLDLANNQ---ISNLA-PLSG  261 (384)
T ss_dssp             CCGGGGGCTTCSEEECCSSCCCCCGG--GGGCTTCCEEE-CCSSCCCCCGGGGGCTTCSEEECCSSC---CCCCG-GGTT
T ss_pred             cccccccccccceeeccCCccCCCCc--ccccCCCCEEE-CCCCCCCCcchhhcccccchhccccCc---cCCCC-cccc
Confidence            34557788899999999666544333  46778999999 888876 55567889999999999985   33333 3778


Q ss_pred             cCCCCeEEeeeccchhHHHHhhccccCCCCCCceEEeeecccCCCCchhhhcCCCCceEEeccCCccCceeeecCCCCCc
Q 036414           88 LHKLECLKLANQGKMWQITRMILSEYKFPPSLTQLSLSNTELIEDPMPTLEKLPHLEVLKLKQNSYFERKLACVGCSSFP  167 (252)
Q Consensus        88 l~~L~~L~l~~~~~~~~~~~l~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~  167 (252)
                      +++|+++++.+ +.+.+    ++.+..+ +.++.+.+..+.++.  +..+..+++++.+++++|.+.+..   . ...++
T Consensus       262 ~~~L~~L~l~~-~~l~~----~~~~~~~-~~l~~l~~~~n~l~~--~~~~~~~~~l~~L~ls~n~l~~l~---~-l~~l~  329 (384)
T d2omza2         262 LTKLTELKLGA-NQISN----ISPLAGL-TALTNLELNENQLED--ISPISNLKNLTYLTLYFNNISDIS---P-VSSLT  329 (384)
T ss_dssp             CTTCSEEECCS-SCCCC----CGGGTTC-TTCSEEECCSSCCSC--CGGGGGCTTCSEEECCSSCCSCCG---G-GGGCT
T ss_pred             cccCCEeeccC-cccCC----CCccccc-ccccccccccccccc--ccccchhcccCeEECCCCCCCCCc---c-cccCC
Confidence            89999999988 55544    5566677 889999999988873  455788999999999999886532   2 55899


Q ss_pred             cccEEEecCCccccceeccccccccccceeeccCCCCCCChHHHHhccccceeecccC
Q 036414          168 QLKILHLKSMLWLEEWTMGAGAMPKLESLILNPCAYLRKLPEELWRIKSLCKLELHWP  225 (252)
Q Consensus       168 ~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~l~~~  225 (252)
                      +|++|++++|+ +++++. ++.+++|+.|++++|... .++. +.++++|++|++++.
T Consensus       330 ~L~~L~L~~n~-l~~l~~-l~~l~~L~~L~l~~N~l~-~l~~-l~~l~~L~~L~L~~N  383 (384)
T d2omza2         330 KLQRLFFANNK-VSDVSS-LANLTNINWLSAGHNQIS-DLTP-LANLTRITQLGLNDQ  383 (384)
T ss_dssp             TCCEEECCSSC-CCCCGG-GGGCTTCCEEECCSSCCC-BCGG-GTTCTTCSEEECCCE
T ss_pred             CCCEEECCCCC-CCCChh-HcCCCCCCEEECCCCcCC-CChh-hccCCCCCEeeCCCC
Confidence            99999999998 888764 788999999999999865 4553 788999999999763

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.62  E-value=2.3e-15  Score=113.38  Aligned_cols=163  Identities=19%  Similarity=0.261  Sum_probs=128.4

Q ss_pred             HHhhccccEEEecCCCCCCCCCcccCCCCCCcEecccCCCCC-chhhcCCCCCccEEEeeccCCccccchhHhhhccCCC
Q 036414           13 IWMMQKLMHLNFGSITLPAPPKNYSSSLKNLIFISALHPSSC-TPDILSRLPTVQTLRISGDLSHYHSGVSKSLCELHKL   91 (252)
Q Consensus        13 i~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~~l~~~~~-~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L   91 (252)
                      ...+.++++|+++++.+.. + +++..+++|++|+ ++.+.+ ....++.+++|++|++++|.   ...++ .+..+++|
T Consensus        36 ~~~l~~l~~L~l~~~~i~~-l-~~l~~l~nL~~L~-Ls~N~l~~~~~l~~l~~L~~L~l~~n~---~~~~~-~l~~l~~L  108 (199)
T d2omxa2          36 QTDLDQVTTLQADRLGIKS-I-DGVEYLNNLTQIN-FSNNQLTDITPLKNLTKLVDILMNNNQ---IADIT-PLANLTNL  108 (199)
T ss_dssp             HHHHTTCCEEECTTSCCCC-C-TTGGGCTTCCEEE-CCSSCCCCCGGGTTCTTCCEEECCSSC---CCCCG-GGTTCTTC
T ss_pred             HHHhcCCCEEECCCCCCCC-c-cccccCCCcCcCc-cccccccCcccccCCcccccccccccc---ccccc-cccccccc
Confidence            3568899999999776543 3 4588899999999 988877 44458999999999999985   33344 47889999


Q ss_pred             CeEEeeeccchhHHHHhhccccCCCCCCceEEeeecccCCCCchhhhcCCCCceEEeccCCccCceeeecCCCCCccccE
Q 036414           92 ECLKLANQGKMWQITRMILSEYKFPPSLTQLSLSNTELIEDPMPTLEKLPHLEVLKLKQNSYFERKLACVGCSSFPQLKI  171 (252)
Q Consensus        92 ~~L~l~~~~~~~~~~~l~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~  171 (252)
                      +.+++.+ +....    ++.+..+ ++|+.+++++|.+..  ...+..+++|+.|++.+|.+.+..   . ++++++|++
T Consensus       109 ~~L~l~~-~~~~~----~~~~~~l-~~L~~L~l~~n~l~~--~~~l~~~~~L~~L~l~~n~l~~l~---~-l~~l~~L~~  176 (199)
T d2omxa2         109 TGLTLFN-NQITD----IDPLKNL-TNLNRLELSSNTISD--ISALSGLTSLQQLNFSSNQVTDLK---P-LANLTTLER  176 (199)
T ss_dssp             SEEECCS-SCCCC----CGGGTTC-TTCSEEECCSSCCCC--CGGGTTCTTCSEEECCSSCCCCCG---G-GTTCTTCCE
T ss_pred             ccccccc-ccccc----ccccchh-hhhHHhhhhhhhhcc--cccccccccccccccccccccCCc---c-ccCCCCCCE
Confidence            9999988 44333    3467777 999999999998863  346788999999999988876532   2 568999999


Q ss_pred             EEecCCccccceeccccccccccce
Q 036414          172 LHLKSMLWLEEWTMGAGAMPKLESL  196 (252)
Q Consensus       172 L~l~~~~~l~~~~~~~~~l~~L~~L  196 (252)
                      |++++|+ +++++. ++.+++|+.|
T Consensus       177 L~ls~N~-i~~i~~-l~~L~~L~~L  199 (199)
T d2omxa2         177 LDISSNK-VSDISV-LAKLTNLESL  199 (199)
T ss_dssp             EECCSSC-CCCCGG-GGGCTTCSEE
T ss_pred             EECCCCC-CCCCcc-ccCCCCCCcC
Confidence            9999998 888864 6778888765

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.57  E-value=1.7e-15  Score=120.33  Aligned_cols=181  Identities=19%  Similarity=0.166  Sum_probs=132.3

Q ss_pred             cCCCCCCcEecccCCCCC----chhhcCCCCCccEEEeeccCCccccchhHhhhccCCCCeEEeeeccchhH-HHHhhcc
Q 036414           37 SSSLKNLIFISALHPSSC----TPDILSRLPTVQTLRISGDLSHYHSGVSKSLCELHKLECLKLANQGKMWQ-ITRMILS  111 (252)
Q Consensus        37 l~~l~~L~~L~~l~~~~~----~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~-~~~l~~~  111 (252)
                      .....+|++|+ ++.+..    ....+..+++|++|++++|.  .....+..+.++++|++|++++|..+.+ .   +..
T Consensus        42 ~~~~~~L~~Ld-Ls~~~i~~~~l~~l~~~c~~L~~L~L~~~~--l~~~~~~~l~~~~~L~~L~Ls~c~~itd~~---l~~  115 (284)
T d2astb2          42 HFSPFRVQHMD-LSNSVIEVSTLHGILSQCSKLQNLSLEGLR--LSDPIVNTLAKNSNLVRLNLSGCSGFSEFA---LQT  115 (284)
T ss_dssp             CCCCBCCCEEE-CTTCEECHHHHHHHHTTBCCCSEEECTTCB--CCHHHHHHHTTCTTCSEEECTTCBSCCHHH---HHH
T ss_pred             hccCCCCCEEE-CCCCccCHHHHHHHHHhCCCcccccccccC--CCcHHHHHHhcCCCCcCccccccccccccc---cch
Confidence            44566899999 887765    23336789999999999996  6677788899999999999999766622 0   232


Q ss_pred             -ccCCCCCCceEEeeecc-cCCCCc-hhh-hcCCCCceEEeccCC--ccCceeeecCCCCCccccEEEecCCccccc-ee
Q 036414          112 -EYKFPPSLTQLSLSNTE-LIEDPM-PTL-EKLPHLEVLKLKQNS--YFERKLACVGCSSFPQLKILHLKSMLWLEE-WT  184 (252)
Q Consensus       112 -~~~~~~~L~~l~l~~~~-~~~~~~-~~l-~~~~~L~~L~l~~~~--~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~-~~  184 (252)
                       .... ++|++|++++|. +++... ..+ ..+++|+.|+++++.  +.+..+... ...+|+|++|++++|..+++ ..
T Consensus       116 l~~~~-~~L~~L~ls~c~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~i~~~~l~~l-~~~~~~L~~L~L~~~~~itd~~~  193 (284)
T d2astb2         116 LLSSC-SRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTL-VRRCPNLVHLDLSDSVMLKNDCF  193 (284)
T ss_dssp             HHHHC-TTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHH-HHHCTTCSEEECTTCTTCCGGGG
T ss_pred             hhHHH-Hhccccccccccccccccchhhhcccccccchhhhccccccccccccccc-ccccccccccccccccCCCchhh
Confidence             3445 999999999974 442222 233 346799999998753  333223222 35689999999999886764 34


Q ss_pred             ccccccccccceeeccCCCC-CCChHHHHhccccceeecccC
Q 036414          185 MGAGAMPKLESLILNPCAYL-RKLPEELWRIKSLCKLELHWP  225 (252)
Q Consensus       185 ~~~~~l~~L~~L~l~~~~~~-~~~p~~l~~l~~L~~L~l~~~  225 (252)
                      ..+..+++|++|++++|... +.-...+.++++|+.|++.+|
T Consensus       194 ~~l~~~~~L~~L~L~~C~~i~~~~l~~L~~~~~L~~L~l~~~  235 (284)
T d2astb2         194 QEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI  235 (284)
T ss_dssp             GGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS
T ss_pred             hhhcccCcCCEEECCCCCCCChHHHHHHhcCCCCCEEeeeCC
Confidence            45678999999999998643 333445778999999999988

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.51  E-value=3.4e-14  Score=109.92  Aligned_cols=209  Identities=19%  Similarity=0.110  Sum_probs=136.6

Q ss_pred             CCccccchHHHhhccccEEEecCCCCCCCCCcccCCCCCCcEecccCCCCC---c-hhhcCCCCCccEEEeeccCCcccc
Q 036414            4 SYIDHSSEDIWMMQKLMHLNFGSITLPAPPKNYSSSLKNLIFISALHPSSC---T-PDILSRLPTVQTLRISGDLSHYHS   79 (252)
Q Consensus         4 ~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~~l~~~~~---~-~~~l~~l~~L~~L~l~~~~~~~~~   79 (252)
                      +.++++|.++.  .++++|++++|.+....+..+.++++|++|+ ++.+..   . +..+..+++++++.+..+. ....
T Consensus        18 ~~l~~iP~~l~--~~l~~L~Ls~n~i~~l~~~~f~~l~~L~~L~-ls~n~~~~~i~~~~f~~l~~l~~l~~~~~n-~l~~   93 (242)
T d1xwdc1          18 SKVTEIPSDLP--RNAIELRFVLTKLRVIQKGAFSGFGDLEKIE-ISQNDVLEVIEADVFSNLPKLHEIRIEKAN-NLLY   93 (242)
T ss_dssp             CSCSSCCSCSC--SCCSEEEEESCCCCEECTTTTTTCTTCCEEE-EESCTTCCEECSSSEESCTTCCEEEEECCT-TCCE
T ss_pred             CCCCCcCCCCC--CCCCEEECcCCcCCccChhHhhccchhhhhh-hccccccceeeccccccccccccccccccc-cccc
Confidence            46788887654  4789999997766543344688999999999 888765   2 3336778999999887643 1334


Q ss_pred             chhHhhhccCCCCeEEeeeccchhHHHHhhccccCC--CCCCceEEeeecccCCCCchhhhcC-CCCceEEeccCCccCc
Q 036414           80 GVSKSLCELHKLECLKLANQGKMWQITRMILSEYKF--PPSLTQLSLSNTELIEDPMPTLEKL-PHLEVLKLKQNSYFER  156 (252)
Q Consensus        80 ~~~~~l~~l~~L~~L~l~~~~~~~~~~~l~~~~~~~--~~~L~~l~l~~~~~~~~~~~~l~~~-~~L~~L~l~~~~~~~~  156 (252)
                      ..+..+.++++|+++++.+ +.+..    .+....+  ...+..+...++.+.......+..+ ..++.+++.++.+...
T Consensus        94 ~~~~~~~~l~~L~~l~l~~-~~l~~----~~~~~~~~~l~~l~~~~~~n~~l~~i~~~~~~~~~~~l~~L~l~~n~l~~i  168 (242)
T d1xwdc1          94 INPEAFQNLPNLQYLLISN-TGIKH----LPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEI  168 (242)
T ss_dssp             ECTTSEECCTTCCEEEEES-CCCCS----CCCCTTTCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCCEE
T ss_pred             cccccccccccccccccch-hhhcc----cccccccccccccccccccccccccccccccccccccceeeeccccccccc
Confidence            4456678899999999988 44533    3433333  0344444444445554444444444 4788889887776542


Q ss_pred             eeeecCCCCCccccEEEecCCccccceecc-ccccccccceeeccCCCCCCChH-HHHhccccceeecccC
Q 036414          157 KLACVGCSSFPQLKILHLKSMLWLEEWTMG-AGAMPKLESLILNPCAYLRKLPE-ELWRIKSLCKLELHWP  225 (252)
Q Consensus       157 ~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~-~~~l~~L~~L~l~~~~~~~~~p~-~l~~l~~L~~L~l~~~  225 (252)
                        ... ....++++.+...++..+++++.. +..+++|+.|++++|... .+|. .+.++++|+.+++...
T Consensus       169 --~~~-~~~~~~l~~~~~l~~n~l~~l~~~~f~~l~~L~~L~Ls~N~l~-~l~~~~~~~l~~L~~l~~~~l  235 (242)
T d1xwdc1         169 --HNC-AFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIH-SLPSYGLENLKKLRARSTYNL  235 (242)
T ss_dssp             --CTT-TTTTCCEEEEECTTCTTCCCCCTTTTTTSCCCSEEECTTSCCC-CCCSSSCTTCCEEESSSEESS
T ss_pred             --ccc-cccchhhhccccccccccccccHHHhcCCCCCCEEECCCCcCC-ccCHHHHcCCcccccCcCCCC
Confidence              222 345566666655444448888654 578999999999998764 6665 3566777777766543

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.43  E-value=3.7e-14  Score=103.03  Aligned_cols=131  Identities=16%  Similarity=0.119  Sum_probs=72.0

Q ss_pred             CCCCeEEeeeccchhHHHHhhc-cccCCCCCCceEEeeecccCCCCchhhhcCCCCceEEeccCCccCceeeecCCCCCc
Q 036414           89 HKLECLKLANQGKMWQITRMIL-SEYKFPPSLTQLSLSNTELIEDPMPTLEKLPHLEVLKLKQNSYFERKLACVGCSSFP  167 (252)
Q Consensus        89 ~~L~~L~l~~~~~~~~~~~l~~-~~~~~~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~  167 (252)
                      .++++|++++ +.+..    ++ ....+ ++|+.|++++|.+...  ..+..+++|++|++++|.+...... . ...++
T Consensus        18 ~~lr~L~L~~-n~I~~----i~~~~~~l-~~L~~L~Ls~N~i~~l--~~~~~l~~L~~L~ls~N~i~~l~~~-~-~~~l~   87 (162)
T d1a9na_          18 VRDRELDLRG-YKIPV----IENLGATL-DQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEG-L-DQALP   87 (162)
T ss_dssp             TSCEEEECTT-SCCCS----CCCGGGGT-TCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSC-H-HHHCT
T ss_pred             CcCcEEECCC-CCCCc----cCcccccc-ccCCEEECCCCCCCcc--CCcccCcchhhhhcccccccCCCcc-c-ccccc
Confidence            3445555554 33333    33 22334 5556666666555421  2345556666666666655432111 1 23466


Q ss_pred             cccEEEecCCccccceec--cccccccccceeeccCCCCCCCh----HHHHhccccceeecccCCHHHHH
Q 036414          168 QLKILHLKSMLWLEEWTM--GAGAMPKLESLILNPCAYLRKLP----EELWRIKSLCKLELHWPQPELRQ  231 (252)
Q Consensus       168 ~L~~L~l~~~~~l~~~~~--~~~~l~~L~~L~l~~~~~~~~~p----~~l~~l~~L~~L~l~~~~~~~~~  231 (252)
                      +|+.|++++|+ +++++.  .+..+++|+.|++++|+..+ .|    ..+..+|+|+.|+-..+..+-.+
T Consensus        88 ~L~~L~L~~N~-i~~~~~l~~l~~l~~L~~L~l~~N~i~~-~~~~r~~~i~~lp~L~~LD~~~i~~~er~  155 (162)
T d1a9na_          88 DLTELILTNNS-LVELGDLDPLASLKSLTYLCILRNPVTN-KKHYRLYVIYKVPQVRVLDFQKVKLKERQ  155 (162)
T ss_dssp             TCCEEECCSCC-CCCGGGGGGGGGCTTCCEEECCSSGGGG-STTHHHHHHHHCTTCSEETTEECCHHHHH
T ss_pred             ccccceecccc-ccccccccccccccccchhhcCCCcccc-ccchHHHHHHHCCCcCeeCCCCCCHHHHH
Confidence            66677776666 555432  34566777777777776532 22    34677888988887777654433

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.34  E-value=7e-13  Score=96.11  Aligned_cols=129  Identities=15%  Similarity=0.108  Sum_probs=97.2

Q ss_pred             cCCCCCccEEEeeccCCccccchhHhhhccCCCCeEEeeeccchhHHHHhhccccCCCCCCceEEeeecccCCCCchhhh
Q 036414           59 LSRLPTVQTLRISGDLSHYHSGVSKSLCELHKLECLKLANQGKMWQITRMILSEYKFPPSLTQLSLSNTELIEDPMPTLE  138 (252)
Q Consensus        59 l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~l~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~  138 (252)
                      +.+..++++|++++|.   ...++.....+++|+.|++++ +.+..    ++.+..+ ++|++|++++|.++...+..+.
T Consensus        14 ~~n~~~lr~L~L~~n~---I~~i~~~~~~l~~L~~L~Ls~-N~i~~----l~~~~~l-~~L~~L~ls~N~i~~l~~~~~~   84 (162)
T d1a9na_          14 YTNAVRDRELDLRGYK---IPVIENLGATLDQFDAIDFSD-NEIRK----LDGFPLL-RRLKTLLVNNNRICRIGEGLDQ   84 (162)
T ss_dssp             EECTTSCEEEECTTSC---CCSCCCGGGGTTCCSEEECCS-SCCCE----ECCCCCC-SSCCEEECCSSCCCEECSCHHH
T ss_pred             ccCcCcCcEEECCCCC---CCccCccccccccCCEEECCC-CCCCc----cCCcccC-cchhhhhcccccccCCCccccc
Confidence            4567789999999984   455565567788999999998 66655    6667777 8999999999988865666667


Q ss_pred             cCCCCceEEeccCCccCceeeecCCCCCccccEEEecCCccccceec----cccccccccceee
Q 036414          139 KLPHLEVLKLKQNSYFERKLACVGCSSFPQLKILHLKSMLWLEEWTM----GAGAMPKLESLIL  198 (252)
Q Consensus       139 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~----~~~~l~~L~~L~l  198 (252)
                      .+++|++|++++|.+........ ...+++|++|++++|+ +...+.    .+..+|+|+.|+.
T Consensus        85 ~l~~L~~L~L~~N~i~~~~~l~~-l~~l~~L~~L~l~~N~-i~~~~~~r~~~i~~lp~L~~LD~  146 (162)
T d1a9na_          85 ALPDLTELILTNNSLVELGDLDP-LASLKSLTYLCILRNP-VTNKKHYRLYVIYKVPQVRVLDF  146 (162)
T ss_dssp             HCTTCCEEECCSCCCCCGGGGGG-GGGCTTCCEEECCSSG-GGGSTTHHHHHHHHCTTCSEETT
T ss_pred             cccccccceeccccccccccccc-cccccccchhhcCCCc-cccccchHHHHHHHCCCcCeeCC
Confidence            88999999998888765322223 5678999999999998 665542    3567888888773

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.31  E-value=4e-12  Score=87.77  Aligned_cols=117  Identities=23%  Similarity=0.223  Sum_probs=75.0

Q ss_pred             CeEEeeeccchhHHHHhhccccCCCCCCceEEeeecccCCCCchhhhcCCCCceEEeccCCccCceeeecCCCCCccccE
Q 036414           92 ECLKLANQGKMWQITRMILSEYKFPPSLTQLSLSNTELIEDPMPTLEKLPHLEVLKLKQNSYFERKLACVGCSSFPQLKI  171 (252)
Q Consensus        92 ~~L~l~~~~~~~~~~~l~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~  171 (252)
                      |.|++++ +.+..    ++.+..+ ++|++|++++|.+. ..|..++.+++|+.|++++|.+...  + . .+.+++|+.
T Consensus         1 R~L~Ls~-n~l~~----l~~l~~l-~~L~~L~ls~N~l~-~lp~~~~~l~~L~~L~l~~N~i~~l--~-~-~~~l~~L~~   69 (124)
T d1dcea3           1 RVLHLAH-KDLTV----LCHLEQL-LLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALENV--D-G-VANLPRLQE   69 (124)
T ss_dssp             SEEECTT-SCCSS----CCCGGGG-TTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCCC--G-G-GTTCSSCCE
T ss_pred             CEEEcCC-CCCCC----CcccccC-CCCCEEECCCCccC-cchhhhhhhhccccccccccccccc--C-c-cccccccCe
Confidence            3455655 44444    4555666 77777777777776 3455667777788888877776542  1 2 557778888


Q ss_pred             EEecCCccccceec--cccccccccceeeccCCCCC--CChH-HHHhcccccee
Q 036414          172 LHLKSMLWLEEWTM--GAGAMPKLESLILNPCAYLR--KLPE-ELWRIKSLCKL  220 (252)
Q Consensus       172 L~l~~~~~l~~~~~--~~~~l~~L~~L~l~~~~~~~--~~p~-~l~~l~~L~~L  220 (252)
                      |++++|+ +++++.  ..+.+++|+.|++++|+..+  ..+. ....+|+|+++
T Consensus        70 L~l~~N~-i~~~~~~~~l~~~~~L~~L~l~~N~i~~~~~~~~~l~~~lp~L~~L  122 (124)
T d1dcea3          70 LLLCNNR-LQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSI  122 (124)
T ss_dssp             EECCSSC-CCSSSTTGGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCSEE
T ss_pred             EECCCCc-cCCCCCchhhcCCCCCCEEECCCCcCCcCccHHHHHHHHCcCcceE
Confidence            8888777 666542  35667778888888776532  2333 33556777665

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.30  E-value=5.5e-13  Score=99.48  Aligned_cols=123  Identities=15%  Similarity=0.166  Sum_probs=84.8

Q ss_pred             cEEEecCCCCCCCCCcccCCCCCCcEecccCCCCC---c-hhhcCCCCCccEEEeeccCCccccchhHhhhccCCCCeEE
Q 036414           20 MHLNFGSITLPAPPKNYSSSLKNLIFISALHPSSC---T-PDILSRLPTVQTLRISGDLSHYHSGVSKSLCELHKLECLK   95 (252)
Q Consensus        20 ~~L~l~~~~~~~~~~~~l~~l~~L~~L~~l~~~~~---~-~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~   95 (252)
                      +.++.+++.+. .+|..+.  +++++|+ ++.+.+   . ...++.+++|++|+++++.  .....+..+..+++|++|+
T Consensus        11 ~~v~Cs~~~L~-~iP~~lp--~~l~~L~-Ls~N~i~~~~~~~~f~~l~~L~~L~L~~N~--i~~~~~~~~~~~~~L~~L~   84 (192)
T d1w8aa_          11 TTVDCTGRGLK-EIPRDIP--LHTTELL-LNDNELGRISSDGLFGRLPHLVKLELKRNQ--LTGIEPNAFEGASHIQELQ   84 (192)
T ss_dssp             TEEECTTSCCS-SCCSCCC--TTCSEEE-CCSCCCCSBCCSCSGGGCTTCCEEECCSSC--CCCBCTTTTTTCTTCCEEE
T ss_pred             CEEEEeCCCcC-ccCCCCC--CCCCEEE-eCCCCCcccccccccCCCceEeeeeccccc--cccccccccccccccceee
Confidence            45666644433 4555443  4677777 777765   1 2335667788888887775  4445556677778888888


Q ss_pred             eeeccchhHHHHhhc--cccCCCCCCceEEeeecccCCCCchhhhcCCCCceEEeccCCcc
Q 036414           96 LANQGKMWQITRMIL--SEYKFPPSLTQLSLSNTELIEDPMPTLEKLPHLEVLKLKQNSYF  154 (252)
Q Consensus        96 l~~~~~~~~~~~l~~--~~~~~~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~  154 (252)
                      +++ +.+..    ++  .+.++ ++|++|++++|++....+.+|..+++|+++++++|.+.
T Consensus        85 Ls~-N~l~~----l~~~~F~~l-~~L~~L~L~~N~l~~i~~~~f~~l~~L~~l~L~~N~~~  139 (192)
T d1w8aa_          85 LGE-NKIKE----ISNKMFLGL-HQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFN  139 (192)
T ss_dssp             CCS-CCCCE----ECSSSSTTC-TTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBC
T ss_pred             ecc-ccccc----cCHHHHhCC-CcccccccCCccccccCHHHhcCCcccccccccccccc
Confidence            887 56655    54  56777 88888888888888777777888888888888877654

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.29  E-value=1.6e-12  Score=89.84  Aligned_cols=13  Identities=31%  Similarity=0.519  Sum_probs=5.0

Q ss_pred             CccccEEEecCCc
Q 036414          166 FPQLKILHLKSML  178 (252)
Q Consensus       166 ~~~L~~L~l~~~~  178 (252)
                      +++|+.|++++|+
T Consensus        89 ~~~L~~L~l~~N~  101 (124)
T d1dcea3          89 CPRLVLLNLQGNS  101 (124)
T ss_dssp             CTTCCEEECTTSG
T ss_pred             CCCCCEEECCCCc
Confidence            3333333333333

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.28  E-value=4.1e-11  Score=92.16  Aligned_cols=193  Identities=15%  Similarity=0.127  Sum_probs=130.3

Q ss_pred             cEEEecCCCCCCCCCcccCCCCCCcEecccCCCCC--chh-hcCCCCCccEEEeeccCCccccch-hHhhhccCCCCeEE
Q 036414           20 MHLNFGSITLPAPPKNYSSSLKNLIFISALHPSSC--TPD-ILSRLPTVQTLRISGDLSHYHSGV-SKSLCELHKLECLK   95 (252)
Q Consensus        20 ~~L~l~~~~~~~~~~~~l~~l~~L~~L~~l~~~~~--~~~-~l~~l~~L~~L~l~~~~~~~~~~~-~~~l~~l~~L~~L~   95 (252)
                      +.++.++..+ ..+|..+.  ++++.|+ ++.+.+  ++. .+.++++|++|++++|.  ....+ +..+..+++++++.
T Consensus        11 ~~i~c~~~~l-~~iP~~l~--~~l~~L~-Ls~n~i~~l~~~~f~~l~~L~~L~ls~n~--~~~~i~~~~f~~l~~l~~l~   84 (242)
T d1xwdc1          11 RVFLCQESKV-TEIPSDLP--RNAIELR-FVLTKLRVIQKGAFSGFGDLEKIEISQND--VLEVIEADVFSNLPKLHEIR   84 (242)
T ss_dssp             SEEEEESCSC-SSCCSCSC--SCCSEEE-EESCCCCEECTTTTTTCTTCCEEEEESCT--TCCEECSSSEESCTTCCEEE
T ss_pred             CEEEEeCCCC-CCcCCCCC--CCCCEEE-CcCCcCCccChhHhhccchhhhhhhcccc--ccceeecccccccccccccc
Confidence            5666664443 36776543  5799999 888887  444 47889999999999995  43333 34567899999999


Q ss_pred             eeeccchhHHHHhhc--cccCCCCCCceEEeeecccCCCCch-hhhcCCCCceEEeccCCccCceeeecCCCCC-ccccE
Q 036414           96 LANQGKMWQITRMIL--SEYKFPPSLTQLSLSNTELIEDPMP-TLEKLPHLEVLKLKQNSYFERKLACVGCSSF-PQLKI  171 (252)
Q Consensus        96 l~~~~~~~~~~~l~~--~~~~~~~~L~~l~l~~~~~~~~~~~-~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~-~~L~~  171 (252)
                      +..++.+..    ++  .+..+ ++|+.+++.++.+....+. .+..+.++..+....+.+...... . +.++ ..++.
T Consensus        85 ~~~~n~l~~----~~~~~~~~l-~~L~~l~l~~~~l~~~~~~~~~~~l~~l~~~~~~n~~l~~i~~~-~-~~~~~~~l~~  157 (242)
T d1xwdc1          85 IEKANNLLY----INPEAFQNL-PNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERN-S-FVGLSFESVI  157 (242)
T ss_dssp             EECCTTCCE----ECTTSEECC-TTCCEEEEESCCCCSCCCCTTTCBSSCEEEEEESCTTCCEECTT-S-STTSBSSCEE
T ss_pred             ccccccccc----ccccccccc-ccccccccchhhhccccccccccccccccccccccccccccccc-c-ccccccccee
Confidence            887555533    33  56777 9999999999988744332 233444555555544444332111 1 3334 47889


Q ss_pred             EEecCCccccceeccccccccccceeeccCCCCCCChHH-HHhccccceeecccCC
Q 036414          172 LHLKSMLWLEEWTMGAGAMPKLESLILNPCAYLRKLPEE-LWRIKSLCKLELHWPQ  226 (252)
Q Consensus       172 L~l~~~~~l~~~~~~~~~l~~L~~L~l~~~~~~~~~p~~-l~~l~~L~~L~l~~~~  226 (252)
                      +++++++ ++.++......+++..+....+..++.+|.. +..+++|++|+++++.
T Consensus       158 L~l~~n~-l~~i~~~~~~~~~l~~~~~l~~n~l~~l~~~~f~~l~~L~~L~Ls~N~  212 (242)
T d1xwdc1         158 LWLNKNG-IQEIHNCAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTR  212 (242)
T ss_dssp             EECCSSC-CCEECTTTTTTCCEEEEECTTCTTCCCCCTTTTTTSCCCSEEECTTSC
T ss_pred             eeccccc-ccccccccccchhhhccccccccccccccHHHhcCCCCCCEEECCCCc
Confidence            9999988 8888766656667766655454555677764 5789999999998864

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=99.27  E-value=3.9e-14  Score=106.34  Aligned_cols=136  Identities=21%  Similarity=0.178  Sum_probs=78.4

Q ss_pred             cchhHhhhccCCCCeEEeeeccchhHHHHhhccccCCCCCCceEEeeecccCCCCchhhhcCCCCceEEeccCCccCcee
Q 036414           79 SGVSKSLCELHKLECLKLANQGKMWQITRMILSEYKFPPSLTQLSLSNTELIEDPMPTLEKLPHLEVLKLKQNSYFERKL  158 (252)
Q Consensus        79 ~~~~~~l~~l~~L~~L~l~~~~~~~~~~~l~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~  158 (252)
                      ..++..+..+++|++|++++ +.+..    ++.+..+ ++|++|++++|.++. .+.....+++|++|++++|.+.... 
T Consensus        38 ~~l~~sl~~L~~L~~L~Ls~-n~I~~----i~~l~~l-~~L~~L~Ls~N~i~~-i~~~~~~~~~L~~L~l~~N~i~~l~-  109 (198)
T d1m9la_          38 EKMDATLSTLKACKHLALST-NNIEK----ISSLSGM-ENLRILSLGRNLIKK-IENLDAVADTLEELWISYNQIASLS-  109 (198)
T ss_dssp             CCCHHHHHHTTTCCEEECSE-EEESC----CCCHHHH-TTCCEEECCEEEECS-CSSHHHHHHHCCEEECSEEECCCHH-
T ss_pred             hhhhhHHhcccccceeECcc-cCCCC----cccccCC-ccccChhhccccccc-ccccccccccccccccccccccccc-
Confidence            34455566666666666666 44444    4445555 666777776666652 3333344456677777666554421 


Q ss_pred             eecCCCCCccccEEEecCCcccccee--ccccccccccceeeccCCCCCCC----------hHHHHhccccceeecccCC
Q 036414          159 ACVGCSSFPQLKILHLKSMLWLEEWT--MGAGAMPKLESLILNPCAYLRKL----------PEELWRIKSLCKLELHWPQ  226 (252)
Q Consensus       159 ~~~~~~~~~~L~~L~l~~~~~l~~~~--~~~~~l~~L~~L~l~~~~~~~~~----------p~~l~~l~~L~~L~l~~~~  226 (252)
                        . ...+++|++|++++|+ +++++  ..++.+++|+.|++++|+.....          ...+..+|+|+.||-..+.
T Consensus       110 --~-~~~l~~L~~L~L~~N~-i~~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~~r~~vi~~lp~L~~LD~~~I~  185 (198)
T d1m9la_         110 --G-IEKLVNLRVLYMSNNK-ITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLDGMPVD  185 (198)
T ss_dssp             --H-HHHHHHSSEEEESEEE-CCCHHHHHHHTTTTTCSEEEECSSHHHHHHCTTTTHHHHHHHHHHHCSSCCEESSGGGT
T ss_pred             --c-ccccccccccccccch-hccccccccccCCCccceeecCCCccccCcccccchhhHHHHHHHHCCCcCEeCCccCC
Confidence              1 3356677777777766 55553  23456677777777776532210          1125678888888866554

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=99.16  E-value=1.1e-10  Score=94.15  Aligned_cols=54  Identities=26%  Similarity=0.310  Sum_probs=43.4

Q ss_pred             CCccccEEEecCCccccceeccccccccccceeeccCCCCCCChHHHHhccccceeecccCC
Q 036414          165 SFPQLKILHLKSMLWLEEWTMGAGAMPKLESLILNPCAYLRKLPEELWRIKSLCKLELHWPQ  226 (252)
Q Consensus       165 ~~~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~l~~~~  226 (252)
                      .+++|++|++++|+ +++++.   .+++|+.|++++|... .+|.   .+++|++|++++++
T Consensus       282 ~~~~L~~L~Ls~N~-l~~lp~---~~~~L~~L~L~~N~L~-~l~~---~~~~L~~L~L~~N~  335 (353)
T d1jl5a_         282 LPPSLEELNVSNNK-LIELPA---LPPRLERLIASFNHLA-EVPE---LPQNLKQLHVEYNP  335 (353)
T ss_dssp             CCTTCCEEECCSSC-CSCCCC---CCTTCCEEECCSSCCS-CCCC---CCTTCCEEECCSSC
T ss_pred             cCCCCCEEECCCCc-cCcccc---ccCCCCEEECCCCcCC-cccc---ccCCCCEEECcCCc
Confidence            35789999999998 888764   4688999999998764 6774   35689999999875

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.15  E-value=5.2e-11  Score=88.47  Aligned_cols=153  Identities=16%  Similarity=0.040  Sum_probs=98.2

Q ss_pred             cEecccCCCCC--chhhcCCCCCccEEEeeccCCccccch-hHhhhccCCCCeEEeeeccchhHHHHhhc--cccCCCCC
Q 036414           44 IFISALHPSSC--TPDILSRLPTVQTLRISGDLSHYHSGV-SKSLCELHKLECLKLANQGKMWQITRMIL--SEYKFPPS  118 (252)
Q Consensus        44 ~~L~~l~~~~~--~~~~l~~l~~L~~L~l~~~~~~~~~~~-~~~l~~l~~L~~L~l~~~~~~~~~~~l~~--~~~~~~~~  118 (252)
                      ++++ .+.++.  +|..+.  +++++|+|++|.  ..... ...+..+++|++|++.+ +.+..    ++  .+..+ ++
T Consensus        11 ~~v~-Cs~~~L~~iP~~lp--~~l~~L~Ls~N~--i~~~~~~~~f~~l~~L~~L~L~~-N~i~~----~~~~~~~~~-~~   79 (192)
T d1w8aa_          11 TTVD-CTGRGLKEIPRDIP--LHTTELLLNDNE--LGRISSDGLFGRLPHLVKLELKR-NQLTG----IEPNAFEGA-SH   79 (192)
T ss_dssp             TEEE-CTTSCCSSCCSCCC--TTCSEEECCSCC--CCSBCCSCSGGGCTTCCEEECCS-SCCCC----BCTTTTTTC-TT
T ss_pred             CEEE-EeCCCcCccCCCCC--CCCCEEEeCCCC--CcccccccccCCCceEeeeeccc-ccccc----ccccccccc-cc
Confidence            3455 444444  555553  688899998885  43333 34567888899999987 44433    33  55666 88


Q ss_pred             CceEEeeecccCCCCchhhhcCCCCceEEeccCCccCceeeecCCCCCccccEEEecCCccccceeccccccccccceee
Q 036414          119 LTQLSLSNTELIEDPMPTLEKLPHLEVLKLKQNSYFERKLACVGCSSFPQLKILHLKSMLWLEEWTMGAGAMPKLESLIL  198 (252)
Q Consensus       119 L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l  198 (252)
                      |++|++++|++....+.+|..+++|++|++++|.+...... . +..+++|++|++++|+ +........-...++.+.+
T Consensus        80 L~~L~Ls~N~l~~l~~~~F~~l~~L~~L~L~~N~l~~i~~~-~-f~~l~~L~~l~L~~N~-~~~~~~~~~~~~~l~~~~l  156 (192)
T d1w8aa_          80 IQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPG-S-FEHLNSLTSLNLASNP-FNCNCHLAWFAEWLRKKSL  156 (192)
T ss_dssp             CCEEECCSCCCCEECSSSSTTCTTCCEEECCSSCCCEECTT-S-STTCTTCCEEECTTCC-BCCSGGGHHHHHHHHHHCC
T ss_pred             cceeeeccccccccCHHHHhCCCcccccccCCccccccCHH-H-hcCCcccccccccccc-cccccchHHHhhhhhhhcc
Confidence            99999999988877777888889999999988887653322 2 5678889999998888 5422111111123444555


Q ss_pred             ccCCCCCCChHH
Q 036414          199 NPCAYLRKLPEE  210 (252)
Q Consensus       199 ~~~~~~~~~p~~  210 (252)
                      ..+......|..
T Consensus       157 ~~~~~~c~~p~~  168 (192)
T d1w8aa_         157 NGGAARCGAPSK  168 (192)
T ss_dssp             SGGGCBBCSSTT
T ss_pred             cCCCeEeCCChh
Confidence            554443344543

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=99.15  E-value=3.2e-11  Score=97.72  Aligned_cols=93  Identities=16%  Similarity=0.105  Sum_probs=66.1

Q ss_pred             ccccchHHHhhccccEEEecCCCCCC----CCCcccCCCCCCcEecccCCCCC-------------chhhcCCCCCccEE
Q 036414            6 IDHSSEDIWMMQKLMHLNFGSITLPA----PPKNYSSSLKNLIFISALHPSSC-------------TPDILSRLPTVQTL   68 (252)
Q Consensus         6 l~~lp~~i~~l~~L~~L~l~~~~~~~----~~~~~l~~l~~L~~L~~l~~~~~-------------~~~~l~~l~~L~~L   68 (252)
                      +..+..++.....|+.|++++|.+..    .+...+...++|+.+. +..+..             +...+..+++|++|
T Consensus        20 ~~~l~~~L~~~~~l~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~l~-l~~~~~~~~~~~~~~~~~~l~~~l~~~~~L~~L   98 (344)
T d2ca6a1          20 EKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAE-FSDIFTGRVKDEIPEALRLLLQALLKCPKLHTV   98 (344)
T ss_dssp             HHTTSHHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEE-CCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEE
T ss_pred             HHHHHHHHhhCCCCCEEECcCCcCCHHHHHHHHHHHHhCCCCCEEE-CCCCcccccccccchHHHHHHHHHhhCCCcccc
Confidence            45667778888999999999876643    2344567778888888 654432             23335678899999


Q ss_pred             EeeccC--CccccchhHhhhccCCCCeEEeeec
Q 036414           69 RISGDL--SHYHSGVSKSLCELHKLECLKLANQ   99 (252)
Q Consensus        69 ~l~~~~--~~~~~~~~~~l~~l~~L~~L~l~~~   99 (252)
                      ++++|.  ......+...+..+++|++|++.++
T Consensus        99 ~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~n  131 (344)
T d2ca6a1          99 RLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNN  131 (344)
T ss_dssp             ECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSS
T ss_pred             cccccccccccccchhhhhcccccchheecccc
Confidence            999886  2223345666777899999999874

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=99.13  E-value=5.5e-13  Score=99.94  Aligned_cols=111  Identities=21%  Similarity=0.193  Sum_probs=59.1

Q ss_pred             CCcccCCCCCCcEecccCCCCC-chhhcCCCCCccEEEeeccCCccccchhHhhhccCCCCeEEeeeccchhHHHHhhcc
Q 036414           33 PKNYSSSLKNLIFISALHPSSC-TPDILSRLPTVQTLRISGDLSHYHSGVSKSLCELHKLECLKLANQGKMWQITRMILS  111 (252)
Q Consensus        33 ~~~~l~~l~~L~~L~~l~~~~~-~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~l~~~  111 (252)
                      ++..+..+++|++|+ ++.+.+ ..+.+..+++|+.|++++|.   ...++.....+++|+.|++.+ +.+..    ++.
T Consensus        40 l~~sl~~L~~L~~L~-Ls~n~I~~i~~l~~l~~L~~L~Ls~N~---i~~i~~~~~~~~~L~~L~l~~-N~i~~----l~~  110 (198)
T d1m9la_          40 MDATLSTLKACKHLA-LSTNNIEKISSLSGMENLRILSLGRNL---IKKIENLDAVADTLEELWISY-NQIAS----LSG  110 (198)
T ss_dssp             CHHHHHHTTTCCEEE-CSEEEESCCCCHHHHTTCCEEECCEEE---ECSCSSHHHHHHHCCEEECSE-EECCC----HHH
T ss_pred             hhhHHhcccccceeE-CcccCCCCcccccCCccccChhhcccc---ccccccccccccccccccccc-ccccc----ccc
Confidence            334455555555555 544443 22334455666666666662   333343333445566666666 34433    333


Q ss_pred             ccCCCCCCceEEeeecccCCCC-chhhhcCCCCceEEeccCCc
Q 036414          112 EYKFPPSLTQLSLSNTELIEDP-MPTLEKLPHLEVLKLKQNSY  153 (252)
Q Consensus       112 ~~~~~~~L~~l~l~~~~~~~~~-~~~l~~~~~L~~L~l~~~~~  153 (252)
                      +..+ ++|+.|++++|.++... ...+..+++|+.|++++|.+
T Consensus       111 ~~~l-~~L~~L~L~~N~i~~~~~~~~l~~l~~L~~L~L~~N~l  152 (198)
T d1m9la_         111 IEKL-VNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPL  152 (198)
T ss_dssp             HHHH-HHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSSHH
T ss_pred             cccc-ccccccccccchhccccccccccCCCccceeecCCCcc
Confidence            4445 66677777766665322 13456667777777766654

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=98.99  E-value=8.1e-11  Score=95.31  Aligned_cols=210  Identities=18%  Similarity=0.147  Sum_probs=137.1

Q ss_pred             cchHHHhhccccEEEecCCCCCCC----------CCcccCCCCCCcEecccCCCCC-------chhhcCCCCCccEEEee
Q 036414            9 SSEDIWMMQKLMHLNFGSITLPAP----------PKNYSSSLKNLIFISALHPSSC-------TPDILSRLPTVQTLRIS   71 (252)
Q Consensus         9 lp~~i~~l~~L~~L~l~~~~~~~~----------~~~~l~~l~~L~~L~~l~~~~~-------~~~~l~~l~~L~~L~l~   71 (252)
                      +-..+...++|+.++++++.....          +...+..+++|++|+ ++.+..       +...+..+++|++|+++
T Consensus        51 l~~~l~~~~~L~~l~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~L~~L~-L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~  129 (344)
T d2ca6a1          51 LSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVR-LSDNAFGPTAQEPLIDFLSKHTPLEHLYLH  129 (344)
T ss_dssp             HHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEE-CCSCCCCTTTHHHHHHHHHHCTTCCEEECC
T ss_pred             HHHHHHhCCCCCEEECCCCcccccccccchHHHHHHHHHhhCCCccccc-ccccccccccccchhhhhcccccchheecc
Confidence            334456778999999986543221          222356778999999 887765       33335568999999999


Q ss_pred             ccCCccccc----hhHh---------hhccCCCCeEEeeeccchh--HHHHhhc-cccCCCCCCceEEeeecccCCCC--
Q 036414           72 GDLSHYHSG----VSKS---------LCELHKLECLKLANQGKMW--QITRMIL-SEYKFPPSLTQLSLSNTELIEDP--  133 (252)
Q Consensus        72 ~~~~~~~~~----~~~~---------l~~l~~L~~L~l~~~~~~~--~~~~l~~-~~~~~~~~L~~l~l~~~~~~~~~--  133 (252)
                      +|.  ....    +...         ....+.|+.+.+.+ +.+.  .... +. .+... ++++.++++.|.++...  
T Consensus       130 ~n~--l~~~~~~~l~~~l~~~~~~~~~~~~~~L~~l~l~~-n~i~~~~~~~-l~~~l~~~-~~L~~L~L~~n~i~~~g~~  204 (344)
T d2ca6a1         130 NNG--LGPQAGAKIARALQELAVNKKAKNAPPLRSIICGR-NRLENGSMKE-WAKTFQSH-RLLHTVKMVQNGIRPEGIE  204 (344)
T ss_dssp             SSC--CHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCS-SCCTGGGHHH-HHHHHHHC-TTCCEEECCSSCCCHHHHH
T ss_pred             ccc--ccccccccccccccccccccccccCcccceeeccc-cccccccccc-ccchhhhh-hhhcccccccccccccccc
Confidence            885  2211    1111         23467899999887 3331  1000 23 45555 89999999999886432  


Q ss_pred             ---chhhhcCCCCceEEeccCCccCce---eeecCCCCCccccEEEecCCccccce-----eccc--cccccccceeecc
Q 036414          134 ---MPTLEKLPHLEVLKLKQNSYFERK---LACVGCSSFPQLKILHLKSMLWLEEW-----TMGA--GAMPKLESLILNP  200 (252)
Q Consensus       134 ---~~~l~~~~~L~~L~l~~~~~~~~~---~~~~~~~~~~~L~~L~l~~~~~l~~~-----~~~~--~~l~~L~~L~l~~  200 (252)
                         ...+..+++|+.|++++|.+....   +... ...+++|++|++++|. +++.     -..+  ...+.|++|++++
T Consensus       205 ~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~~L~~~-l~~~~~L~~L~Ls~n~-i~~~g~~~l~~~l~~~~~~~L~~L~ls~  282 (344)
T d2ca6a1         205 HLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIA-LKSWPNLRELGLNDCL-LSARGAAAVVDAFSKLENIGLQTLRLQY  282 (344)
T ss_dssp             HHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHH-GGGCTTCCEEECTTCC-CCHHHHHHHHHHHHTCSSCCCCEEECCS
T ss_pred             cchhhhhcchhhhccccccccccccccccccccc-ccccccchhhhhhcCc-cCchhhHHHHHHhhhccCCCCCEEECCC
Confidence               233567899999999988865421   2222 4578999999999998 6632     1111  2346799999999


Q ss_pred             CCCCCC----ChHHHH-hccccceeecccCC
Q 036414          201 CAYLRK----LPEELW-RIKSLCKLELHWPQ  226 (252)
Q Consensus       201 ~~~~~~----~p~~l~-~l~~L~~L~l~~~~  226 (252)
                      |.....    +...+. ++++|++|+++++.
T Consensus       283 N~i~~~~~~~l~~~l~~~~~~L~~L~l~~N~  313 (344)
T d2ca6a1         283 NEIELDAVRTLKTVIDEKMPDLLFLELNGNR  313 (344)
T ss_dssp             SCCBHHHHHHHHHHHHHHCTTCCEEECTTSB
T ss_pred             CcCChHHHHHHHHHHHccCCCCCEEECCCCc
Confidence            976432    333453 67899999998753

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=98.95  E-value=9e-09  Score=82.59  Aligned_cols=32  Identities=25%  Similarity=0.310  Sum_probs=25.2

Q ss_pred             cccccceeeccCCCCCCChHHHHhccccceeecccC
Q 036414          190 MPKLESLILNPCAYLRKLPEELWRIKSLCKLELHWP  225 (252)
Q Consensus       190 l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~l~~~  225 (252)
                      +++|++|++++|... .+|..   +++|++|+++++
T Consensus       283 ~~~L~~L~Ls~N~l~-~lp~~---~~~L~~L~L~~N  314 (353)
T d1jl5a_         283 PPSLEELNVSNNKLI-ELPAL---PPRLERLIASFN  314 (353)
T ss_dssp             CTTCCEEECCSSCCS-CCCCC---CTTCCEEECCSS
T ss_pred             CCCCCEEECCCCccC-ccccc---cCCCCEEECCCC
Confidence            578999999998754 67753   678899998866

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.90  E-value=7.4e-10  Score=92.15  Aligned_cols=85  Identities=15%  Similarity=0.093  Sum_probs=46.4

Q ss_pred             HHhhccccEEEecCCCCCC----CCCcccCCCCCCcEecccCCCCCch-------hhcC-CCCCccEEEeeccC--Cccc
Q 036414           13 IWMMQKLMHLNFGSITLPA----PPKNYSSSLKNLIFISALHPSSCTP-------DILS-RLPTVQTLRISGDL--SHYH   78 (252)
Q Consensus        13 i~~l~~L~~L~l~~~~~~~----~~~~~l~~l~~L~~L~~l~~~~~~~-------~~l~-~l~~L~~L~l~~~~--~~~~   78 (252)
                      +..+++++.|++++|.+..    .+...+..+++|++|+ ++.+.+..       ..+. ...+|++|++++|.  ....
T Consensus        23 ~~~l~~l~~L~L~~~~i~~~~~~~l~~~L~~~~~L~~Ld-Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~it~~~~  101 (460)
T d1z7xw1          23 LPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELN-LRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGC  101 (460)
T ss_dssp             HHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEE-CTTCCCHHHHHHHHHHTTCSTTCCCCEEECTTSCCBGGGH
T ss_pred             HHhCCCCCEEEeCCCCCCHHHHHHHHHHHhcCCCCCEEE-CcCCcCChHHHHHHHHHHhcCCCCCCEEECCCCCcccccc
Confidence            4556677777777665432    2233355666777777 66665521       1121 12457777777664  1111


Q ss_pred             cchhHhhhccCCCCeEEeee
Q 036414           79 SGVSKSLCELHKLECLKLAN   98 (252)
Q Consensus        79 ~~~~~~l~~l~~L~~L~l~~   98 (252)
                      ..++..+..+++|++|++.+
T Consensus       102 ~~l~~~l~~~~~L~~L~L~~  121 (460)
T d1z7xw1         102 GVLSSTLRTLPTLQELHLSD  121 (460)
T ss_dssp             HHHHHHTTSCTTCCEEECCS
T ss_pred             ccccchhhcccccccccccc
Confidence            23445556667777777765

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.86  E-value=3.2e-09  Score=75.83  Aligned_cols=104  Identities=18%  Similarity=0.077  Sum_probs=64.8

Q ss_pred             CccEEEeeccCCccccchhHhhhccCCCCeEEeeeccchhHHHHhhc--cccCCCCCCceEEeeecccCCCCchhhhcCC
Q 036414           64 TVQTLRISGDLSHYHSGVSKSLCELHKLECLKLANQGKMWQITRMIL--SEYKFPPSLTQLSLSNTELIEDPMPTLEKLP  141 (252)
Q Consensus        64 ~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~l~~--~~~~~~~~L~~l~l~~~~~~~~~~~~l~~~~  141 (252)
                      ....++.++.   .....|..+..+++|++|++.+++.+..    ++  .+..+ ++|+.|++++|++....+.+|..++
T Consensus         9 ~~~~l~c~~~---~~~~~p~~l~~l~~l~~L~l~~n~~l~~----i~~~~f~~l-~~L~~L~Ls~N~l~~i~~~~f~~l~   80 (156)
T d2ifga3           9 GSSGLRCTRD---GALDSLHHLPGAENLTELYIENQQHLQH----LELRDLRGL-GELRNLTIVKSGLRFVAPDAFHFTP   80 (156)
T ss_dssp             SSSCEECCSS---CCCTTTTTSCSCSCCSEEECCSCSSCCE----ECGGGSCSC-CCCSEEECCSSCCCEECTTGGGSCS
T ss_pred             CCCeEEecCC---CCccCcccccCccccCeeecCCCccccc----cCchhhccc-cccCcceeeccccCCcccccccccc
Confidence            3444555444   3344555666677777777765444544    44  56666 7777777777777766667777777


Q ss_pred             CCceEEeccCCccCceeeecCCCCCccccEEEecCCc
Q 036414          142 HLEVLKLKQNSYFERKLACVGCSSFPQLKILHLKSML  178 (252)
Q Consensus       142 ~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~  178 (252)
                      +|++|++++|.+......   ......|+.|++++|+
T Consensus        81 ~L~~L~Ls~N~l~~l~~~---~~~~~~l~~L~L~~Np  114 (156)
T d2ifga3          81 RLSRLNLSFNALESLSWK---TVQGLSLQELVLSGNP  114 (156)
T ss_dssp             CCCEEECCSSCCSCCCST---TTCSCCCCEEECCSSC
T ss_pred             cccceeccCCCCcccChh---hhccccccccccCCCc
Confidence            777777777776542222   2233457777777776

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.75  E-value=8.8e-09  Score=73.49  Aligned_cols=108  Identities=19%  Similarity=0.112  Sum_probs=75.8

Q ss_pred             ccCCCCeEEeeeccchhHHHHhhc-cccCCCCCCceEEeeec-ccCCCCchhhhcCCCCceEEeccCCccCceeeecCCC
Q 036414           87 ELHKLECLKLANQGKMWQITRMIL-SEYKFPPSLTQLSLSNT-ELIEDPMPTLEKLPHLEVLKLKQNSYFERKLACVGCS  164 (252)
Q Consensus        87 ~l~~L~~L~l~~~~~~~~~~~l~~-~~~~~~~~L~~l~l~~~-~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~  164 (252)
                      .+.....++..+ ..+.+    .| .+..+ ++|++|++.++ .++...+.+|..+++|+.|++++|.+...... . +.
T Consensus         6 ~c~~~~~l~c~~-~~~~~----~p~~l~~l-~~l~~L~l~~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~-~-f~   77 (156)
T d2ifga3           6 CPHGSSGLRCTR-DGALD----SLHHLPGA-ENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPD-A-FH   77 (156)
T ss_dssp             CCSSSSCEECCS-SCCCT----TTTTSCSC-SCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTT-G-GG
T ss_pred             CcCCCCeEEecC-CCCcc----CcccccCc-cccCeeecCCCccccccCchhhccccccCcceeeccccCCcccc-c-cc
Confidence            334455566665 33333    45 66666 88888888765 47666667788888999999988887653222 2 55


Q ss_pred             CCccccEEEecCCccccceeccccccccccceeeccCCC
Q 036414          165 SFPQLKILHLKSMLWLEEWTMGAGAMPKLESLILNPCAY  203 (252)
Q Consensus       165 ~~~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~~~~  203 (252)
                      ++++|++|+|++|+ ++.++...-...+|+.|++++|+.
T Consensus        78 ~l~~L~~L~Ls~N~-l~~l~~~~~~~~~l~~L~L~~Np~  115 (156)
T d2ifga3          78 FTPRLSRLNLSFNA-LESLSWKTVQGLSLQELVLSGNPL  115 (156)
T ss_dssp             SCSCCCEEECCSSC-CSCCCSTTTCSCCCCEEECCSSCC
T ss_pred             ccccccceeccCCC-CcccChhhhccccccccccCCCcc
Confidence            78889999999888 888766554445688889888875

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.25  E-value=4.4e-08  Score=81.15  Aligned_cols=214  Identities=18%  Similarity=0.080  Sum_probs=132.8

Q ss_pred             cccEEEecCCCCCCC----CCcccCCCCCCcEecccCCCCC--------chhhcCCCCCccEEEeeccC--CccccchhH
Q 036414           18 KLMHLNFGSITLPAP----PKNYSSSLKNLIFISALHPSSC--------TPDILSRLPTVQTLRISGDL--SHYHSGVSK   83 (252)
Q Consensus        18 ~L~~L~l~~~~~~~~----~~~~l~~l~~L~~L~~l~~~~~--------~~~~l~~l~~L~~L~l~~~~--~~~~~~~~~   83 (252)
                      ....+++..+.....    ....+...+.++.+. +..+..        ..........++.+++++|.  .........
T Consensus       199 ~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~l~-~~~n~~~~~~~~~~~~~~~~~~~~l~~l~l~~n~i~~~~~~~~~~  277 (460)
T d1z7xw1         199 QLEALKLESCGVTSDNCRDLCGIVASKASLRELA-LGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCR  277 (460)
T ss_dssp             CCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEE-CCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHH
T ss_pred             cccccccccccccchhhhcccccccccccccccc-hhhccccccccchhhcccccccccccccccccccccccccccccc
Confidence            455677765543321    112245667788888 776654        12224557889999999885  111223445


Q ss_pred             hhhccCCCCeEEeeeccchhH--HHHhhc-cccCCCCCCceEEeeecccCCCCchhh----hcCCCCceEEeccCCccCc
Q 036414           84 SLCELHKLECLKLANQGKMWQ--ITRMIL-SEYKFPPSLTQLSLSNTELIEDPMPTL----EKLPHLEVLKLKQNSYFER  156 (252)
Q Consensus        84 ~l~~l~~L~~L~l~~~~~~~~--~~~l~~-~~~~~~~~L~~l~l~~~~~~~~~~~~l----~~~~~L~~L~l~~~~~~~~  156 (252)
                      .+...+.++.+++.+ +.+..  +.. +. .+......|+.++++++.++......+    ...++|++|++++|.+.+.
T Consensus       278 ~l~~~~~l~~l~l~~-n~i~~~~~~~-l~~~l~~~~~~L~~l~l~~~~l~~~~~~~l~~~~~~~~~L~~L~Ls~N~i~~~  355 (460)
T d1z7xw1         278 VLRAKESLKELSLAG-NELGDEGARL-LCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDA  355 (460)
T ss_dssp             HHHHCTTCCEEECTT-CCCHHHHHHH-HHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHH
T ss_pred             ccccccccccccccc-ccccccccch-hhccccccccccccccccccchhhhhhhhcccccccccchhhhheeeecccCc
Confidence            567788999999988 44411  001 22 222222689999999998875554443    4567899999998887542


Q ss_pred             e---eeecCCCCCccccEEEecCCccccc-----eeccccccccccceeeccCCCCCC----ChHHHH-hccccceeecc
Q 036414          157 K---LACVGCSSFPQLKILHLKSMLWLEE-----WTMGAGAMPKLESLILNPCAYLRK----LPEELW-RIKSLCKLELH  223 (252)
Q Consensus       157 ~---~~~~~~~~~~~L~~L~l~~~~~l~~-----~~~~~~~l~~L~~L~l~~~~~~~~----~p~~l~-~l~~L~~L~l~  223 (252)
                      .   +...-....+.|++|++++|. +++     +...+..+++|++|++++|.....    +...++ +...|+.|++.
T Consensus       356 g~~~l~~~l~~~~~~L~~L~Ls~n~-i~~~~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~~l~~~l~~~~~~L~~l~l~  434 (460)
T d1z7xw1         356 GVRELCQGLGQPGSVLRVLWLADCD-VSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGCLLEQLVLY  434 (460)
T ss_dssp             HHHHHHHHHTSTTCCCCEEECTTSC-CCHHHHHHHHHHHHHCCCCCEEECCSSSCCHHHHHHHHHHHTSTTCCCCEEECT
T ss_pred             ccchhhhhhhcccCCCCEEECCCCC-CChHHHHHHHHHHhcCCCCCEEECCCCcCCHHHHHHHHHHHHhCCCccCEEECC
Confidence            1   111101346779999999998 764     233345678999999999976532    122332 23479999998


Q ss_pred             cCC--HHHHHHHHh
Q 036414          224 WPQ--PELRQRLRA  235 (252)
Q Consensus       224 ~~~--~~~~~~~~~  235 (252)
                      ++.  ++..+.++.
T Consensus       435 ~~~~~~~~~~~l~~  448 (460)
T d1z7xw1         435 DIYWSEEMEDRLQA  448 (460)
T ss_dssp             TCCCCHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHH
Confidence            765  455555544

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.78  E-value=1.5e-06  Score=61.90  Aligned_cols=82  Identities=26%  Similarity=0.272  Sum_probs=41.0

Q ss_pred             hcCCCCceEEeccCCccCcee-eecCCCCCccccEEEecCCccccceec-cccccccccceeeccCCCCCCCh-------
Q 036414          138 EKLPHLEVLKLKQNSYFERKL-ACVGCSSFPQLKILHLKSMLWLEEWTM-GAGAMPKLESLILNPCAYLRKLP-------  208 (252)
Q Consensus       138 ~~~~~L~~L~l~~~~~~~~~~-~~~~~~~~~~L~~L~l~~~~~l~~~~~-~~~~l~~L~~L~l~~~~~~~~~p-------  208 (252)
                      ..+++|++|++++|.++.... ... ...+++|+.|++++|. +++++. .......|+.+++++|+......       
T Consensus        62 ~~~~~L~~L~Ls~N~i~~l~~~~~~-~~~l~~L~~L~Ls~N~-i~~l~~l~~l~~~~L~~L~L~~Npl~~~~~~~~~y~~  139 (162)
T d1koha1          62 ENIPELLSLNLSNNRLYRLDDMSSI-VQKAPNLKILNLSGNE-LKSERELDKIKGLKLEELWLDGNSLSDTFRDQSTYIS  139 (162)
T ss_dssp             HHCTTCCCCCCCSSCCCCCSGGGTH-HHHSTTCCCCCCTTSC-CCCGGGHHHHTTCCCSSCCCTTSTTSSSSSSHHHHHH
T ss_pred             HhCCCCCEeeCCCccccCCchhHHH-HhhCCcccccccccCc-cccchhhhhhhccccceeecCCCCcCcCcccchhHHH
Confidence            345556666666555543211 111 2345666666666666 555432 11223346666666666543221       


Q ss_pred             HHHHhccccceee
Q 036414          209 EELWRIKSLCKLE  221 (252)
Q Consensus       209 ~~l~~l~~L~~L~  221 (252)
                      ..++.+|+|+.||
T Consensus       140 ~i~~~~P~L~~LD  152 (162)
T d1koha1         140 AIRERFPKLLRLD  152 (162)
T ss_dssp             HHHTTSTTCCEET
T ss_pred             HHHHHCCCCCEEC
Confidence            1244566666665

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.62  E-value=8.9e-07  Score=63.15  Aligned_cols=84  Identities=27%  Similarity=0.304  Sum_probs=43.3

Q ss_pred             hccCCCCeEEeeeccchhHHHHhhc-cccCCCCCCceEEeeecccCCCCchhhhcCCCCceEEeccCCccCcee------
Q 036414           86 CELHKLECLKLANQGKMWQITRMIL-SEYKFPPSLTQLSLSNTELIEDPMPTLEKLPHLEVLKLKQNSYFERKL------  158 (252)
Q Consensus        86 ~~l~~L~~L~l~~~~~~~~~~~l~~-~~~~~~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~------  158 (252)
                      ..+++|++|++++ +.+..+.. ++ .+..+ ++|+.|++++|.++...........+|+.+++++|.+.....      
T Consensus        62 ~~~~~L~~L~Ls~-N~i~~l~~-~~~~~~~l-~~L~~L~Ls~N~i~~l~~l~~l~~~~L~~L~L~~Npl~~~~~~~~~y~  138 (162)
T d1koha1          62 ENIPELLSLNLSN-NRLYRLDD-MSSIVQKA-PNLKILNLSGNELKSERELDKIKGLKLEELWLDGNSLSDTFRDQSTYI  138 (162)
T ss_dssp             HHCTTCCCCCCCS-SCCCCCSG-GGTHHHHS-TTCCCCCCTTSCCCCGGGHHHHTTCCCSSCCCTTSTTSSSSSSHHHHH
T ss_pred             HhCCCCCEeeCCC-ccccCCch-hHHHHhhC-CcccccccccCccccchhhhhhhccccceeecCCCCcCcCcccchhHH
Confidence            4455666666665 33322000 12 23344 677777777777664333223334467777777776543211      


Q ss_pred             eecCCCCCccccEEE
Q 036414          159 ACVGCSSFPQLKILH  173 (252)
Q Consensus       159 ~~~~~~~~~~L~~L~  173 (252)
                      ... ...+|+|+.||
T Consensus       139 ~~i-~~~~P~L~~LD  152 (162)
T d1koha1         139 SAI-RERFPKLLRLD  152 (162)
T ss_dssp             HHH-HTTSTTCCEET
T ss_pred             HHH-HHHCCCCCEEC
Confidence            012 34677888775

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=97.33  E-value=0.00025  Score=50.17  Aligned_cols=35  Identities=17%  Similarity=0.209  Sum_probs=16.5

Q ss_pred             CCCceEEeeecccCCCCch----hhhcCCCCceEEeccC
Q 036414          117 PSLTQLSLSNTELIEDPMP----TLEKLPHLEVLKLKQN  151 (252)
Q Consensus       117 ~~L~~l~l~~~~~~~~~~~----~l~~~~~L~~L~l~~~  151 (252)
                      +.|+.|++++|.++.....    ++...+.|++|+++++
T Consensus        72 ~~L~~L~L~~n~i~~~g~~~l~~aL~~n~sL~~L~l~~n  110 (167)
T d1pgva_          72 PSLRVLNVESNFLTPELLARLLRSTLVTQSIVEFKADNQ  110 (167)
T ss_dssp             SSCCEEECCSSBCCHHHHHHHHHHTTTTCCCSEEECCCC
T ss_pred             ccccceeeehhhcchHHHHHHHHHHHhCCcCCEEECCCC
Confidence            4555555555555432222    2233445555555544

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=97.27  E-value=0.00011  Score=52.21  Aligned_cols=67  Identities=21%  Similarity=0.311  Sum_probs=29.7

Q ss_pred             ccCCCCeEEeeeccch--hHHHHhhccccCCCCCCceEEeeecccCCCCc----hhhhcCCCCceEEeccCCcc
Q 036414           87 ELHKLECLKLANQGKM--WQITRMILSEYKFPPSLTQLSLSNTELIEDPM----PTLEKLPHLEVLKLKQNSYF  154 (252)
Q Consensus        87 ~l~~L~~L~l~~~~~~--~~~~~l~~~~~~~~~~L~~l~l~~~~~~~~~~----~~l~~~~~L~~L~l~~~~~~  154 (252)
                      +.++|++|++.+++.+  ..+..+...+... ++|++|++++|.+++...    ..+...+.|++|++++|.+.
T Consensus        13 n~~~L~~L~L~~~~~i~~~~~~~l~~~L~~n-~~L~~L~Ls~n~l~~~~~~~la~~L~~n~~L~~L~L~~n~i~   85 (167)
T d1pgva_          13 DDTDLKEVNINNMKRVSKERIRSLIEAACNS-KHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLT   85 (167)
T ss_dssp             TCSSCCEEECTTCCSSCHHHHHHHHHHHTTC-SCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCC
T ss_pred             CCCCCcEEEeCCCCCCCHHHHHHHHHHHhhC-CccceeeccccccchhHHHHHhhhhhhcccccceeeehhhcc
Confidence            3466666666543323  1100101133333 556666666665542211    22233455555555555443

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=96.83  E-value=0.00026  Score=49.96  Aligned_cols=92  Identities=18%  Similarity=0.112  Sum_probs=41.0

Q ss_pred             cCCCCCccEEEeeccC--CccccchhHhhhccCCCCeEEeeeccch-hHHHHhhccccCCCCCCceEEeee--cccCCC-
Q 036414           59 LSRLPTVQTLRISGDL--SHYHSGVSKSLCELHKLECLKLANQGKM-WQITRMILSEYKFPPSLTQLSLSN--TELIED-  132 (252)
Q Consensus        59 l~~l~~L~~L~l~~~~--~~~~~~~~~~l~~l~~L~~L~l~~~~~~-~~~~~l~~~~~~~~~~L~~l~l~~--~~~~~~-  132 (252)
                      +...++|++|++++|.  ......+...+...++++.+++.++.-- .....+...+... ++|+.+++..  +.+++. 
T Consensus        42 l~~n~~L~~L~Ls~n~l~~~~~~~L~~~l~~~~~l~~l~l~~~~~~~~g~~~l~~~l~~~-~~L~~l~L~l~~n~i~~~~  120 (166)
T d1io0a_          42 LKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILALVEALQSN-TSLIELRIDNQSQPLGNNV  120 (166)
T ss_dssp             HTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHHHHHGGGGC-SSCCEEECCCCSSCCCHHH
T ss_pred             HhcCCccCeeeccCCcccHHHHHHHHHHHhhcccchhhhhccccccchhHHHHHHHHHhC-ccccEEeeccCCCcCcHHH
Confidence            4455556666666554  1112223344445566666666552211 1000001144444 5666555543  233321 


Q ss_pred             ---CchhhhcCCCCceEEeccC
Q 036414          133 ---PMPTLEKLPHLEVLKLKQN  151 (252)
Q Consensus       133 ---~~~~l~~~~~L~~L~l~~~  151 (252)
                         ....+...++|++|++..+
T Consensus       121 ~~~La~~L~~n~~L~~L~l~~~  142 (166)
T d1io0a_         121 EMEIANMLEKNTTLLKFGYHFT  142 (166)
T ss_dssp             HHHHHHHHHHCSSCCEEECCCS
T ss_pred             HHHHHHHHHhCCCcCEEeCcCC
Confidence               1223345666777766543

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=96.53  E-value=0.0017  Score=45.59  Aligned_cols=115  Identities=8%  Similarity=0.045  Sum_probs=55.7

Q ss_pred             CCCCCccEEEeeccC---CccccchhHhhhccCCCCeEEeeeccchh--HHHHhhc-cccCCCCCCceEEeeecccCCCC
Q 036414           60 SRLPTVQTLRISGDL---SHYHSGVSKSLCELHKLECLKLANQGKMW--QITRMIL-SEYKFPPSLTQLSLSNTELIEDP  133 (252)
Q Consensus        60 ~~l~~L~~L~l~~~~---~~~~~~~~~~l~~l~~L~~L~l~~~~~~~--~~~~l~~-~~~~~~~~L~~l~l~~~~~~~~~  133 (252)
                      .+.++|++|+++++.   ......+...+...++|++|+++++ .++  .... +. .+... ++++.+++++|.++...
T Consensus        14 ~~~~~L~~L~L~~~~~i~~~~~~~l~~al~~n~~L~~L~Ls~n-~l~~~~~~~-L~~~l~~~-~~l~~l~l~~~~~~~~g   90 (166)
T d1io0a_          14 NNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGT-RSNDPVAFA-LAEMLKVN-NTLKSLNVESNFISGSG   90 (166)
T ss_dssp             TTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTS-CCCHHHHHH-HHHHHHHC-SSCCEEECCSSCCCHHH
T ss_pred             hcCCCCcEEEcCCCCCCCHHHHHHHHHHHhcCCccCeeeccCC-cccHHHHHH-HHHHHhhc-ccchhhhhccccccchh
Confidence            345666666666532   1122334455556677777777763 330  0000 11 33333 66777777766655332


Q ss_pred             c----hhhhcCCCCceEEecc--CCccCc---eeeecCCCCCccccEEEecCCc
Q 036414          134 M----PTLEKLPHLEVLKLKQ--NSYFER---KLACVGCSSFPQLKILHLKSML  178 (252)
Q Consensus       134 ~----~~l~~~~~L~~L~l~~--~~~~~~---~~~~~~~~~~~~L~~L~l~~~~  178 (252)
                      .    ..+...++|+.+.+..  +.+...   .+... ....+.|+.|+++.+.
T Consensus        91 ~~~l~~~l~~~~~L~~l~L~l~~n~i~~~~~~~La~~-L~~n~~L~~L~l~~~~  143 (166)
T d1io0a_          91 ILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANM-LEKNTTLLKFGYHFTQ  143 (166)
T ss_dssp             HHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHH-HHHCSSCCEEECCCSS
T ss_pred             HHHHHHHHHhCccccEEeeccCCCcCcHHHHHHHHHH-HHhCCCcCEEeCcCCC
Confidence            2    3334556666655532  233221   11111 2345667777765544