Citrus Sinensis ID: 036428

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------14
Protein Sequence
MVIIKIPICAVGTCLAQHSTDSDLFSTSVLESQLTTSTTFIHFINNNNNMEEANVVETKDGTISVASAFAAHQEAVQDRDHEFLSKAVEEAYKGVECGDGGPFGAVVVRSDEVVVSCHNMVLKHTDPTAHAEVTAVRE
Secondary Structure (PSIPRED)
cEEEEEcccccHHHHHcccccccccccccccccccccEEEEEccccccccccccEEEccccccccccccccccHHHcHHHHHHHHHHHHHHHHHHHccccccEEEEEEEccEEEEEEEccccccccccHHHHHHcccc
Secondary Structure Prediction (SSPRO)
cEEEEEEEEEHcHHHcccccccccccHHHHHHcccccHEEEEEEcccccHHHccEEEcccccEEEccHccccHHHHHHHHHHHHHHHHHHHHHccccccccccEEEEEEccEEEEEEccEEEcccccccHHEHHHHcc
Coil and Loop (DISEMBL)
mviikipicavgtclaqhstdsdlfstSVLESQLTTSTTFIHFINnnnnmeeanvvetkdgtISVASAFAAHQEAVQDRDHEFLSKAVEEAYkgvecgdggpfgavVVRSDEVVVSCHNMvlkhtdptahaEVTAVRE
Flexible Loop (DISEMBL)
MVIIKIPICAVGTCLAQHSTDSDLFSTSVLESQLTTSTTFIHFINNNNNMEEANVVETKDGTISVASAFAAHQEAVQDRDHEFLSKAVEEAYKGVECGDGGPFGAVVVRSDEVVVSCHNMvlkhtdptahaevtavre
Low Complexity Region (SEG)
MVIIKIPICAVGTCLAQHSTDSDLFSTSVLESQLTTSTTFIHFInnnnnMEEANVVETKDGTISVASAFAAHQEAVQDRDHEFLSKAVEEAYKGVECGDGGPFGAvvvrsdevvvSCHNMVLKHTDPTAHAEVTAVRE
Disordered region (IsUnstruct)
*VIIKIPICAVGTCLAQHSTDSDLFSTSVLESQLTTSTTFIHF*************************F***********HEFLSKAVEEAYKGVECGDGGPFGAVVVRSDEVVVSCHNMVLKH**************
Disordered Region (DISOPRED)
*VIIKIPICAVGTCLAQ*****************TTSTTFIHFINNNNNMEEA****************************EFLSKAVEEAYKGVECGDGGPFGAVVVRSDEVVVSCHNMVLKHTDPTAHAEVTAVRE
Disordered Region (DISEMBL)
MVIIKIPICAVGTCLAQHSTDSDLFSTSVLESQLTTSTTFIHFINNNNNMEEANVVETKDGTISVASAFAAHQEAVQDRDHEFLSKAVEEAYKGVECGDGGPFGAVVVRSDEVVVSCHNMVLKHTDPTAHAEVTAVRE
Disordered Region (DISPRO)
MVIIKIPICAVGTCLAQHSTDSDLFSTSVLESQLTTSTTFIHFINNNNNMEEANVVETKDGTISVASAFAAHQEAVQDRDHEFLSKAVEEAYKGVECGDGGPFGAVVVRSDEVVVSCHNMVLKHTDPTAHAEVTAVRE
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MVIIKIPICAVGTCLAQHSTDSDLFSTSVLESQLTTSTTFIHFINNNNNMEEANVVETKDGTISVASAFAAHQEAVQDRDHEFLSKAVEEAYKGVECGDGGPFGAVVVRSDEVVVSCHNMVLKHTDPTAHAEVTAVRE
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	138	2.2.26 [Sep-21-2011]
O34598	156	Guanine deaminase OS=Baci	yes	no	0.427	0.378	0.516	2e-09
O67050	151	tRNA-specific adenosine d	yes	no	0.398	0.364	0.428	7e-06
Q8K9R4	151	Uncharacterized protein B	yes	no	0.434	0.397	0.360	6e-05

>sp|O34598|GUAD_BACSU Guanine deaminase OS=Bacillus subtilis (strain 168) GN=guaD PE=1 SV=1

 Score = 61.2 bits (147), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 31/60 (51%), Positives = 40/60 (66%), Gaps = 1/60 (1%)

Query: 80  DHE-FLSKAVEEAYKGVECGDGGPFGAVVVRSDEVVVSCHNMVLKHTDPTAHAEVTAVRE 138
           +HE FL +AV  A +GV  G GGPFGAV+V+   ++    N V    DPTAHAEVTA+R+
Sbjct: 2   NHETFLKRAVTLACEGVNAGIGGPFGAVIVKDGAIIAEGQNNVTTSNDPTAHAEVTAIRK 61

Catalyzes the hydrolytic deamination of guanine, producing xanthine and ammonia.
Bacillus subtilis (strain 168) (taxid: 224308)
EC: 3EC: .EC: 5EC: .EC: 4EC: .EC: 3

>sp|O67050|TADA_AQUAE tRNA-specific adenosine deaminase OS=Aquifex aeolicus (strain VF5) GN=tadA PE=1 SV=1

 Score = 49.3 bits (116), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 24/56 (42%), Positives = 36/56 (64%), Gaps = 1/56 (1%)

Query: 83  FLSKAVEEAYKGVECGDGGPFGAVVVRSDEVVVSCHNMVLKHTDPTAHAEVTAVRE 138
           FL  A+ EA +  E G+  P GA++V+  E++   HN V +  DPTAHAE+ A++E
Sbjct: 6   FLKVALREAKRAFEKGEV-PVGAIIVKEGEIISKAHNSVEELKDPTAHAEMLAIKE 60

Deaminates adenosine-34 to inosine in tRNA-Arg2.

Aquifex aeolicus (strain VF5) (taxid: 224324)

EC: 3

EC: .

EC: 5

EC: .

EC: 4

EC: .

EC: -

>sp|Q8K9R4|Y246_BUCAP Uncharacterized protein BUsg_246 OS=Buchnera aphidicola subsp. Schizaphis graminum (strain Sg) GN=BUsg_246 PE=3 SV=1

 Score = 46.2 bits (108), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 22/61 (36%), Positives = 38/61 (62%), Gaps = 1/61 (1%)

Query: 78  DRDHEFLSKAVEEAYKGVECGDGGPFGAVVVRSDEVVVSCHNMVLKHTDPTAHAEVTAVR 137
           +RD  ++  A++ AY   E G+  P GA++V  ++++ +  N V+   D TAHAE+ A+R
Sbjct: 4   NRDSYWMKIALKYAYYAEENGEV-PIGAILVFQEKIIGTGWNSVISQNDSTAHAEIIALR 62

Query: 138 E 138
           E
Sbjct: 63  E 63

Buchnera aphidicola subsp. Schizaphis graminum (strain Sg) (taxid: 198804)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	138
414873751	216	TPA: putative cytidine/deoxycytidylate d	0.644	0.412	0.876	2e-39
226504812	186	uncharacterized protein LOC100272576 [Ze	0.644	0.478	0.876	3e-39
388498334	186	unknown [Lotus japonicus]	0.644	0.478	0.865	6e-39
115456425	186	Os03g0833900 [Oryza sativa Japonica Grou	0.644	0.478	0.865	2e-38
255542370	211	Guanine deaminase, putative [Ricinus com	0.746	0.488	0.761	2e-38
326492115	186	predicted protein [Hordeum vulgare subsp	0.644	0.478	0.853	9e-38
356548017	226	PREDICTED: tRNA-specific adenosine deami	0.760	0.464	0.709	2e-37
357111084	186	PREDICTED: guanine deaminase-like [Brach	0.644	0.478	0.853	2e-37
357479227	186	tRNA-specific adenosine deaminase [Medic	0.644	0.478	0.831	3e-37
217071124	186	unknown [Medicago truncatula]	0.644	0.478	0.831	3e-37

>gi|414873751|tpg|DAA52308.1| TPA: putative cytidine/deoxycytidylate deaminase family protein [Zea mays]

 Score =  166 bits (421), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 78/89 (87%), Positives = 86/89 (96%)

Query: 50  MEEANVVETKDGTISVASAFAAHQEAVQDRDHEFLSKAVEEAYKGVECGDGGPFGAVVVR 109
           MEEA VVE+KDGTISVASAFA HQEAVQDRDH+FLSKAVEEAY+GV+CGDGGPFGAVVV 
Sbjct: 1   MEEAKVVESKDGTISVASAFAGHQEAVQDRDHKFLSKAVEEAYRGVDCGDGGPFGAVVVH 60

Query: 110 SDEVVVSCHNMVLKHTDPTAHAEVTAVRE 138
           +DEV+VSCHNMVLK+TDPTAHAEVTA+RE
Sbjct: 61  NDEVIVSCHNMVLKNTDPTAHAEVTAIRE 89

Source: Zea mays

Species: Zea mays

Genus: Zea

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|226504812|ref|NP_001140513.1| uncharacterized protein LOC100272576 [Zea mays] gi|194699798|gb|ACF83983.1| unknown [Zea mays] gi|195610442|gb|ACG27051.1| cytidine/deoxycytidylate deaminase family protein [Zea mays] gi|414873752|tpg|DAA52309.1| TPA: putative cytidine/deoxycytidylate deaminase family protein [Zea mays]

 Score =  166 bits (420), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 78/89 (87%), Positives = 86/89 (96%)

Query: 50  MEEANVVETKDGTISVASAFAAHQEAVQDRDHEFLSKAVEEAYKGVECGDGGPFGAVVVR 109
           MEEA VVE+KDGTISVASAFA HQEAVQDRDH+FLSKAVEEAY+GV+CGDGGPFGAVVV 
Sbjct: 1   MEEAKVVESKDGTISVASAFAGHQEAVQDRDHKFLSKAVEEAYRGVDCGDGGPFGAVVVH 60

Query: 110 SDEVVVSCHNMVLKHTDPTAHAEVTAVRE 138
           +DEV+VSCHNMVLK+TDPTAHAEVTA+RE
Sbjct: 61  NDEVIVSCHNMVLKNTDPTAHAEVTAIRE 89

Source: Zea mays

Species: Zea mays

Genus: Zea

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388498334|gb|AFK37233.1| unknown [Lotus japonicus]

 Score =  165 bits (417), Expect = 6e-39,   Method: Compositional matrix adjust.
 Identities = 77/89 (86%), Positives = 84/89 (94%)

Query: 50  MEEANVVETKDGTISVASAFAAHQEAVQDRDHEFLSKAVEEAYKGVECGDGGPFGAVVVR 109
           MEE NVVETKDGT+SVA+AFA HQEAVQDRDH+FL KAVEEAYKGV+CG GGPFGAV+VR
Sbjct: 1   MEEVNVVETKDGTVSVATAFAGHQEAVQDRDHKFLGKAVEEAYKGVDCGHGGPFGAVIVR 60

Query: 110 SDEVVVSCHNMVLKHTDPTAHAEVTAVRE 138
           +DEVVVSCHNMVL HTDPTAHAEVTA+RE
Sbjct: 61  NDEVVVSCHNMVLNHTDPTAHAEVTAIRE 89

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|115456425|ref|NP_001051813.1| Os03g0833900 [Oryza sativa Japonica Group] gi|40714681|gb|AAR88587.1| putative deoxycytidine deaminase [Oryza sativa Japonica Group] gi|108711941|gb|ABF99736.1| Guanine deaminase, putative, expressed [Oryza sativa Japonica Group] gi|113550284|dbj|BAF13727.1| Os03g0833900 [Oryza sativa Japonica Group] gi|215707116|dbj|BAG93576.1| unnamed protein product [Oryza sativa Japonica Group] gi|218194042|gb|EEC76469.1| hypothetical protein OsI_14201 [Oryza sativa Indica Group] gi|222626116|gb|EEE60248.1| hypothetical protein OsJ_13255 [Oryza sativa Japonica Group]

 Score =  163 bits (413), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 77/89 (86%), Positives = 85/89 (95%)

Query: 50  MEEANVVETKDGTISVASAFAAHQEAVQDRDHEFLSKAVEEAYKGVECGDGGPFGAVVVR 109
           MEEA VVE+KDGTISVASAFA HQEAVQDRDH+FLSKAVEEAY+GV+CG GGPFGAVVVR
Sbjct: 1   MEEAQVVESKDGTISVASAFAGHQEAVQDRDHKFLSKAVEEAYQGVDCGHGGPFGAVVVR 60

Query: 110 SDEVVVSCHNMVLKHTDPTAHAEVTAVRE 138
           +DE+VVSCHNMVL +TDPTAHAEVTA+RE
Sbjct: 61  NDEIVVSCHNMVLDYTDPTAHAEVTAIRE 89

Source: Oryza sativa Japonica Group

Species: Oryza sativa

Genus: Oryza

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255542370|ref|XP_002512248.1| Guanine deaminase, putative [Ricinus communis] gi|223548209|gb|EEF49700.1| Guanine deaminase, putative [Ricinus communis]

 Score =  163 bits (412), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 80/105 (76%), Positives = 91/105 (86%), Gaps = 2/105 (1%)

Query: 34  LTTSTTFIHFINNNNNMEEANVVETKDGTISVASAFAAHQEAVQDRDHEFLSKAVEEAYK 93
           L +S T  +F+ +      + VVE KDGTISVASAFA HQEAVQ+RDH+FL++AVEEAYK
Sbjct: 12  LLSSLTLFNFLLHPAVF--SVVVEAKDGTISVASAFAGHQEAVQNRDHKFLTRAVEEAYK 69

Query: 94  GVECGDGGPFGAVVVRSDEVVVSCHNMVLKHTDPTAHAEVTAVRE 138
           GVECGDGGPFGAVVVR+DE+VVSCHNMVLKHTDPTAHAEVTAVRE
Sbjct: 70  GVECGDGGPFGAVVVRNDEIVVSCHNMVLKHTDPTAHAEVTAVRE 114

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|326492115|dbj|BAJ98282.1| predicted protein [Hordeum vulgare subsp. vulgare]

 Score =  161 bits (407), Expect = 9e-38,   Method: Compositional matrix adjust.
 Identities = 76/89 (85%), Positives = 83/89 (93%)

Query: 50  MEEANVVETKDGTISVASAFAAHQEAVQDRDHEFLSKAVEEAYKGVECGDGGPFGAVVVR 109
           MEEA VVET+DGTISVASAF  HQEAVQDRDH+FLSKAVEEAYKGV+CG GGPFGAVVVR
Sbjct: 1   MEEAKVVETRDGTISVASAFPGHQEAVQDRDHKFLSKAVEEAYKGVDCGHGGPFGAVVVR 60

Query: 110 SDEVVVSCHNMVLKHTDPTAHAEVTAVRE 138
           +DEV+V CHNMVL +TDPTAHAEVTA+RE
Sbjct: 61  NDEVIVGCHNMVLNNTDPTAHAEVTAIRE 89

Source: Hordeum vulgare subsp. vulgare

Species: Hordeum vulgare

Genus: Hordeum

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356548017|ref|XP_003542400.1| PREDICTED: tRNA-specific adenosine deaminase-like [Glycine max]

 Score =  160 bits (405), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 78/110 (70%), Positives = 92/110 (83%), Gaps = 5/110 (4%)

Query: 29  VLESQLTTSTTFIHFINNNNNMEEANVVETKDGTISVASAFAAHQEAVQDRDHEFLSKAV 88
           +L   ++ + TF     N + MEE NVVETKDGT+SVA+AFA HQEAVQDRDH+FLSKAV
Sbjct: 25  LLTQPVSPTITF-----NASVMEEVNVVETKDGTVSVAAAFAGHQEAVQDRDHKFLSKAV 79

Query: 89  EEAYKGVECGDGGPFGAVVVRSDEVVVSCHNMVLKHTDPTAHAEVTAVRE 138
           EEAYKGV+C DGGPFGAV+V +DE+V SCHNMVL +TDPTAHAEVTA+RE
Sbjct: 80  EEAYKGVDCKDGGPFGAVIVHNDEIVASCHNMVLCNTDPTAHAEVTAIRE 129

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357111084|ref|XP_003557345.1| PREDICTED: guanine deaminase-like [Brachypodium distachyon]

 Score =  160 bits (404), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 76/89 (85%), Positives = 84/89 (94%)

Query: 50  MEEANVVETKDGTISVASAFAAHQEAVQDRDHEFLSKAVEEAYKGVECGDGGPFGAVVVR 109
           MEEA VVE+KDGTISVASAFA H +AVQDRDH+FL+KAVEEAYKGV+CGDGGPFGAVVV 
Sbjct: 1   MEEAQVVESKDGTISVASAFAGHHQAVQDRDHKFLTKAVEEAYKGVDCGDGGPFGAVVVC 60

Query: 110 SDEVVVSCHNMVLKHTDPTAHAEVTAVRE 138
           +DE+VVSCHNMVLK TDPTAHAEVTA+RE
Sbjct: 61  NDEIVVSCHNMVLKKTDPTAHAEVTAIRE 89

Source: Brachypodium distachyon

Species: Brachypodium distachyon

Genus: Brachypodium

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357479227|ref|XP_003609899.1| tRNA-specific adenosine deaminase [Medicago truncatula] gi|355510954|gb|AES92096.1| tRNA-specific adenosine deaminase [Medicago truncatula] gi|388511761|gb|AFK43942.1| unknown [Medicago truncatula]

 Score =  159 bits (402), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 74/89 (83%), Positives = 82/89 (92%)

Query: 50  MEEANVVETKDGTISVASAFAAHQEAVQDRDHEFLSKAVEEAYKGVECGDGGPFGAVVVR 109
           MEE NVVETKDGT+SVA+AFA HQEAVQDRDH+FL +AVEEAYKGV+CGDGGPFGAV+V 
Sbjct: 1   MEEVNVVETKDGTVSVATAFAGHQEAVQDRDHKFLRRAVEEAYKGVDCGDGGPFGAVIVH 60

Query: 110 SDEVVVSCHNMVLKHTDPTAHAEVTAVRE 138
           +DEVV SCHNMVL  TDPTAHAEVTA+RE
Sbjct: 61  NDEVVASCHNMVLNFTDPTAHAEVTAIRE 89

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|217071124|gb|ACJ83922.1| unknown [Medicago truncatula]

 Score =  159 bits (402), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 74/89 (83%), Positives = 82/89 (92%)

Query: 50  MEEANVVETKDGTISVASAFAAHQEAVQDRDHEFLSKAVEEAYKGVECGDGGPFGAVVVR 109
           MEE NVVETKDGT+SVA+AFA HQEAVQDRDH+FL +AVEEAYKGV+CGDGGPFGAV+V 
Sbjct: 1   MEEVNVVETKDGTVSVATAFAGHQEAVQDRDHKFLRRAVEEAYKGVDCGDGGPFGAVIVH 60

Query: 110 SDEVVVSCHNMVLKHTDPTAHAEVTAVRE 138
           +DEVV SCHNMVL  TDPTAHAEVTA+RE
Sbjct: 61  NDEVVASCHNMVLNFTDPTAHAEVTAIRE 89

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	138
TAIR|locus:2143774	204	AT5G28050 [Arabidopsis thalian	0.601	0.406	0.722	3.4e-29
WB|WBGene00020052	153	R13A5.10 [Caenorhabditis elega	0.405	0.366	0.607	3.1e-12
WB|WBGene00012968	168	Y48A6B.7 [Caenorhabditis elega	0.405	0.333	0.526	2.5e-10
UNIPROTKB|Q608J2	164	MCA1498 "Zinc-binding domain p	0.442	0.371	0.338	1.1e-05
UNIPROTKB|Q83BW3	159	CBU_1374 "Cytidine/deoxycytidy	0.449	0.389	0.322	6.3e-05
TIGR_CMR|CBU_1374	159	CBU_1374 "cytidine/deoxycytidy	0.449	0.389	0.322	6.3e-05
TIGR_CMR|CHY_2682	153	CHY_2682 "cytidine/deoxycytidy	0.420	0.379	0.383	0.0001
UNIPROTKB|Q2GL20	147	APH_0321 "Cytidine and deoxycy	0.405	0.380	0.355	0.00043
TIGR_CMR|APH_0321	147	APH_0321 "cytidine and deoxycy	0.405	0.380	0.355	0.00043

TAIR|locus:2143774 AT5G28050 [Arabidopsis thaliana (taxid:3702)]

 Score = 324 (119.1 bits), Expect = 3.4e-29, P = 3.4e-29
 Identities = 60/83 (72%), Positives = 69/83 (83%)

Query:    56 VETKDGTISVASAFAAHQEAVQDRDHEFLSKAVEEAYKGVECGDGGPFGAXXXXXXXXXX 115
             +E KDGTISVASAF+ HQ+AV D DH+FL++AVEEAYKGV+CGDGGPFGA          
Sbjct:    25 LEAKDGTISVASAFSGHQQAVHDSDHKFLTQAVEEAYKGVDCGDGGPFGAVIVHNNEVVA 84

Query:   116 SCHNMVLKHTDPTAHAEVTAVRE 138
             SCHNMVLK+TDPTAHAEVTA+RE
Sbjct:    85 SCHNMVLKYTDPTAHAEVTAIRE 107

GO:0003824 "catalytic activity" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA;ISS

GO:0009507 "chloroplast" evidence=ISM

GO:0016787 "hydrolase activity" evidence=IEA;ISS

GO:0005829 "cytosol" evidence=IDA

WB|WBGene00020052 R13A5.10 [Caenorhabditis elegans (taxid:6239)]

 Score = 164 (62.8 bits), Expect = 3.1e-12, P = 3.1e-12
 Identities = 34/56 (60%), Positives = 38/56 (67%)

Query:    82 EFLSKAVEEAYKGVECGDGGPFGAXXXXXXXXXXSCHNMVLKHTDPTAHAEVTAVR 137
             EF+  A+EEA KG+E GDGGPFGA          S HNMVL   DPTAHAEVTA+R
Sbjct:     2 EFMKLAIEEAKKGMEKGDGGPFGAVIVKDGKVIGSGHNMVLVTKDPTAHAEVTAIR 57

GO:0008270 "zinc ion binding" evidence=IEA

GO:0016787 "hydrolase activity" evidence=IEA

WB|WBGene00012968 Y48A6B.7 [Caenorhabditis elegans (taxid:6239)]

 Score = 146 (56.5 bits), Expect = 2.5e-10, P = 2.5e-10
 Identities = 30/57 (52%), Positives = 38/57 (66%)

Query:    82 EFLSKAVEEAYKGVECGDGGPFGAXXXXXXXXXXSC-HNMVLKHTDPTAHAEVTAVR 137
             E +++AV EA +GVECGDGGPFGA          +  HNMVL   DPT HAE+TA++
Sbjct:    16 EHMAEAVAEACRGVECGDGGPFGAVVVDSNGKVVAKGHNMVLVTKDPTMHAEMTAIK 72

GO:0008270 "zinc ion binding" evidence=IEA

GO:0016787 "hydrolase activity" evidence=IEA

UNIPROTKB|Q608J2 MCA1498 "Zinc-binding domain protein" [Methylococcus capsulatus str. Bath (taxid:243233)]

 Score = 102 (41.0 bits), Expect = 1.1e-05, P = 1.1e-05
 Identities = 21/62 (33%), Positives = 33/62 (53%)

Query:    78 DRDHEFLSKAVEEAYK-GVECGDGGPFGAXXXXXXXXXXSCHNMVLKHTDPTAHAEVTAV 136
             ++D  ++  A++   + G+    GGPFGA             N V++  DPTAHAE+ A+
Sbjct:     9 EQDRAYMRLAIQTMRRAGIVDRTGGPFGAVIVRGGQVLAVAGNSVIRDNDPTAHAEINAI 68

Query:   137 RE 138
             RE
Sbjct:    69 RE 70

GO:0008150 "biological_process" evidence=ND

UNIPROTKB|Q83BW3 CBU_1374 "Cytidine/deoxycytidylate deaminase family protein" [Coxiella burnetii RSA 493 (taxid:227377)]

 Score = 95 (38.5 bits), Expect = 6.3e-05, P = 6.3e-05
 Identities = 20/62 (32%), Positives = 29/62 (46%)

Query:    77 QDRDHEFLSKAVEEAYKGVECGDGGPFGAXXXXXXXXXXSCHNMVLKHTDPTAHAEVTAV 136
             ++ D +FL +  +     +    GGPFGA             N V    DPTAH+E+ A+
Sbjct:     3 ENNDKQFLHEVFDLVKNSISHNLGGPFGALIVRDSKIIAKGVNRVTTSNDPTAHSEIVAI 62

Query:   137 RE 138
             RE
Sbjct:    63 RE 64

GO:0008150 "biological_process" evidence=ND

TIGR_CMR|CBU_1374 CBU_1374 "cytidine/deoxycytidylate deaminase family protein" [Coxiella burnetii RSA 493 (taxid:227377)]

 Score = 95 (38.5 bits), Expect = 6.3e-05, P = 6.3e-05
 Identities = 20/62 (32%), Positives = 29/62 (46%)

Query:    77 QDRDHEFLSKAVEEAYKGVECGDGGPFGAXXXXXXXXXXSCHNMVLKHTDPTAHAEVTAV 136
             ++ D +FL +  +     +    GGPFGA             N V    DPTAH+E+ A+
Sbjct:     3 ENNDKQFLHEVFDLVKNSISHNLGGPFGALIVRDSKIIAKGVNRVTTSNDPTAHSEIVAI 62

Query:   137 RE 138
             RE
Sbjct:    63 RE 64

GO:0008150 "biological_process" evidence=ND

GO:0008270 "zinc ion binding" evidence=ISS

TIGR_CMR|CHY_2682 CHY_2682 "cytidine/deoxycytidylate deaminase family protein" [Carboxydothermus hydrogenoformans Z-2901 (taxid:246194)]

 Score = 93 (37.8 bits), Expect = 0.00010, P = 0.00010
 Identities = 23/60 (38%), Positives = 34/60 (56%)

Query:    80 DHE-FLSKAVEEAYKGVECGDGGPFGAXXXXXXXXXXSCHNMVLKHTDPTAHAEVTAVRE 138
             DHE F+++A++EA K    G+  P GA            HN+    +DPTAHAE+ A++E
Sbjct:     2 DHEKFMAEALKEAEKAALQGEV-PVGAVVVYNGEIIGRGHNLRETFSDPTAHAEIVALKE 60

GO:0003824 "catalytic activity" evidence=ISS

GO:0008152 "metabolic process" evidence=ISS

UNIPROTKB|Q2GL20 APH_0321 "Cytidine and deoxycytidylate deaminase family protein" [Anaplasma phagocytophilum HZ (taxid:212042)]

 Score = 89 (36.4 bits), Expect = 0.00043, P = 0.00043
 Identities = 21/59 (35%), Positives = 31/59 (52%)

Query:    79 RDHEFLSKAVEEAYKGVECGDGGPFGAXXXXXXXXXXSCHNMVLKHTDPTAHAEVTAVR 137
             R   ++  A+EEA      G+  P GA            HN+ +++TDPTAHAE+ A+R
Sbjct:     2 RASAYMKIAMEEANSS--SGEI-PVGALVVRNGVIIAKAHNLTIQNTDPTAHAEIVAIR 57

GO:0008150 "biological_process" evidence=ND

TIGR_CMR|APH_0321 APH_0321 "cytidine and deoxycytidylate deaminase family protein" [Anaplasma phagocytophilum HZ (taxid:212042)]

 Score = 89 (36.4 bits), Expect = 0.00043, P = 0.00043
 Identities = 21/59 (35%), Positives = 31/59 (52%)

Query:    79 RDHEFLSKAVEEAYKGVECGDGGPFGAXXXXXXXXXXSCHNMVLKHTDPTAHAEVTAVR 137
             R   ++  A+EEA      G+  P GA            HN+ +++TDPTAHAE+ A+R
Sbjct:     2 RASAYMKIAMEEANSS--SGEI-PVGALVVRNGVIIAKAHNLTIQNTDPTAHAEIVAIR 57


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.317   0.128   0.368    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      138       123   0.00091  102 3  11 22  0.37    31
                                                     29  0.50    32


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  9
  No. of states in DFA:  541 (58 KB)
  Total size of DFA:  119 KB (2079 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  10.54u 0.10s 10.64t   Elapsed:  00:00:00
  Total cpu time:  10.54u 0.10s 10.64t   Elapsed:  00:00:00
  Start:  Sat May 11 15:56:37 2013   End:  Sat May 11 15:56:37 2013

GO:0003824 "catalytic activity" evidence=ISS

GO:0008150 "biological_process" evidence=ND

GO:0008270 "zinc ion binding" evidence=ISS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	138
cd01285	109	cd01285, nucleoside_deaminase, Nucleoside deaminas	3e-14
COG0590	152	COG0590, CumB, Cytosine/adenosine deaminases [Nucl	5e-12
pfam00383	104	pfam00383, dCMP_cyt_deam_1, Cytidine and deoxycyti	6e-12
PRK10860	172	PRK10860, PRK10860, tRNA-specific adenosine deamin	9e-05

>gnl|CDD|238612 cd01285, nucleoside_deaminase, Nucleoside deaminases include adenosine, guanine and cytosine deaminases

 Score = 63.8 bits (156), Expect = 3e-14
 Identities = 24/56 (42%), Positives = 33/56 (58%), Gaps = 2/56 (3%)

Query: 84  LSKAVEEAYKGVECGDGGPFGAVVVRSD-EVVVSCHNMVLKHTDPTAHAEVTAVRE 138
           +  A+E A K +      PFGAV+V  D +V+   HN V +  DPTAHAE+ A+R 
Sbjct: 1   MRLAIELARKALA-EGEVPFGAVIVDDDGKVIARGHNRVEQDGDPTAHAEIVAIRN 55

These enzymes are Zn dependent and catalyze the deamination of nucleosides. The zinc ion in the active site plays a central role in the proposed catalytic mechanism, activating a water molecule to form a hydroxide ion that performs a nucleophilic attack on the substrate. The functional enzyme is a homodimer. Cytosine deaminase catalyzes the deamination of cytosine to uracil and ammonia and is a member of the pyrimidine salvage pathway. Cytosine deaminase is found in bacteria and fungi but is not present in mammals; for this reason, the enzyme is currently of interest for antimicrobial drug design and gene therapy applications against tumors. Some members of this family are tRNA-specific adenosine deaminases that generate inosine at the first position of their anticodon (position 34) of specific tRNAs; this modification is thought to enlarge the codon recognition capacity during protein synthesis. Other members of the family are guanine deaminases which deaminate guanine to xanthine as part of the utilization of guanine as a nitrogen source. Length = 109

>gnl|CDD|223663 COG0590, CumB, Cytosine/adenosine deaminases [Nucleotide transport and metabolism / Translation, ribosomal structure and biogenesis]

 Score = 59.2 bits (144), Expect = 5e-12
 Identities = 24/64 (37%), Positives = 40/64 (62%), Gaps = 2/64 (3%)

Query: 76  VQDRDHEFLSKAVEEAYKGVECGDGGPFGAVVVRSD-EVVVSCHNMVLKHTDPTAHAEVT 134
           + ++D +F+ +A++EA K  +     P GAV+V +D E++   HN   +  DPTAHAE+ 
Sbjct: 4   LSEKDEDFMREALKEAKKAGD-EGEVPVGAVIVDADGEIIARGHNRREEDNDPTAHAEIL 62

Query: 135 AVRE 138
           A+R 
Sbjct: 63  AIRA 66

Length = 152

>gnl|CDD|215887 pfam00383, dCMP_cyt_deam_1, Cytidine and deoxycytidylate deaminase zinc-binding region

 Score = 57.7 bits (140), Expect = 6e-12
 Identities = 20/60 (33%), Positives = 31/60 (51%), Gaps = 1/60 (1%)

Query: 80  DHEFLSKAVEEAYKGVECGDGGPFGAVVVRSD-EVVVSCHNMVLKHTDPTAHAEVTAVRE 138
           D  F+  A+E A +        P GAV+V++D  ++ + +N      DPT HAE  A+R 
Sbjct: 4   DEYFMRLALEAAKRAYTPYSNFPVGAVIVKNDGGIIATGYNGENAGYDPTIHAERNAIRN 63

Length = 104

>gnl|CDD|182786 PRK10860, PRK10860, tRNA-specific adenosine deaminase; Provisional

 Score = 39.8 bits (93), Expect = 9e-05
 Identities = 16/37 (43%), Positives = 24/37 (64%)

Query: 102 PFGAVVVRSDEVVVSCHNMVLKHTDPTAHAEVTAVRE 138
           P GAV+V ++ V+    N  +   DPTAHAE+ A+R+
Sbjct: 34  PVGAVLVHNNRVIGEGWNRPIGRHDPTAHAEIMALRQ 70

Length = 172

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	138
PRK10860	172	tRNA-specific adenosine deaminase; Provisional	99.67
COG0590	152	CumB Cytosine/adenosine deaminases [Nucleotide tra	99.61
TIGR02571	151	ComEB ComE operon protein 2. This protein is found	99.52
cd01286	131	deoxycytidylate_deaminase Deoxycytidylate deaminas	99.46
COG0117	146	RibD Pyrimidine deaminase [Coenzyme metabolism]	99.45
KOG1018	169	consensus Cytosine deaminase FCY1 and related enzy	99.45
PF00383	102	dCMP_cyt_deam_1: Cytidine and deoxycytidylate deam	99.45
cd01285	109	nucleoside_deaminase Nucleoside deaminases include	99.44
PHA02588	168	cd deoxycytidylate deaminase; Provisional	99.43
PLN02807	380	diaminohydroxyphosphoribosylaminopyrimidine deamin	99.36
cd01284	115	Riboflavin_deaminase-reductase Riboflavin-specific	99.35
cd00786	96	cytidine_deaminase-like Cytidine and deoxycytidyla	99.35
PRK10786	367	ribD bifunctional diaminohydroxyphosphoribosylamin	99.31
TIGR00326	344	eubact_ribD riboflavin biosynthesis protein RibD.	99.26
COG2131	164	ComEB Deoxycytidylate deaminase [Nucleotide transp	98.8
cd01283	112	cytidine_deaminase Cytidine deaminase zinc-binding	98.59
TIGR01354	127	cyt_deam_tetra cytidine deaminase, homotetrameric.	98.41
KOG3127	230	consensus Deoxycytidylate deaminase [Nucleotide tr	98.38
PRK06848	139	hypothetical protein; Validated	97.25
PRK05578	131	cytidine deaminase; Validated	96.67
PRK12411	132	cytidine deaminase; Provisional	96.16
COG0295	134	Cdd Cytidine deaminase [Nucleotide transport and m	95.82
PRK08298	136	cytidine deaminase; Validated	95.06
PLN02402	303	cytidine deaminase	94.67
TIGR01355	283	cyt_deam_dimer cytidine deaminase, homodimeric. Th	94.5
TIGR01355	283	cyt_deam_dimer cytidine deaminase, homodimeric. Th	94.28
PRK09027	295	cytidine deaminase; Provisional	94.05
KOG0833	173	consensus Cytidine deaminase [Nucleotide transport	91.26
PLN02402	303	cytidine deaminase	90.26
PLN02182	339	cytidine deaminase	88.08
PF08211	124	dCMP_cyt_deam_2: Cytidine and deoxycytidylate deam	87.79
KOG2771	344	consensus Subunit of tRNA-specific adenosine-34 de	85.0
PRK09027	295	cytidine deaminase; Provisional	84.77

>PRK10860 tRNA-specific adenosine deaminase; Provisional

Probab=99.67  E-value=1.1e-16  Score=125.52  Aligned_cols=59  Identities=31%  Similarity=0.451  Sum_probs=55.2

Q ss_pred             hHHHHHHHHHHHHHhcccCCCCCcEEEEEEeCCeEEEEEecCcccCCCCcchHHHHHhcC
Q 036428           79 RDHEFLSKAVEEAYKGVECGDGGPFGAVVVRSDEVVVSCHNMVLKHTDPTAHAEVTAVRE  138 (138)
Q Consensus        79 ~D~~~Mr~AIelA~ka~~~g~~~PVGAVIV~dGeIIa~G~N~~~~~~DpTaHAE~~AIr~  138 (138)
                      +|++||++|+++|+++...++ .|||||||++|+||++|||+....+||+.|||++|||+
T Consensus        12 ~~~~~m~~A~~~A~~a~~~g~-~pvGAVIV~~g~IIa~g~N~~~~~~d~~~HAEi~Ai~~   70 (172)
T PRK10860         12 SHEYWMRHALTLAKRAWDERE-VPVGAVLVHNNRVIGEGWNRPIGRHDPTAHAEIMALRQ   70 (172)
T ss_pred             cHHHHHHHHHHHHHHhhccCC-CCEEEEEEeCCEEEEEeeCCCCCCCCCccCHHHHHHHH
Confidence            478899999999999998876 99999999999999999999999999999999999973

>COG0590 CumB Cytosine/adenosine deaminases [Nucleotide transport and metabolism / Translation, ribosomal structure and biogenesis]

Probab=99.61  E-value=8.4e-16  Score=118.12  Aligned_cols=62  Identities=39%  Similarity=0.660  Sum_probs=57.2

Q ss_pred             CchhHHHHHHHHHHHHHhcccCCCCCcEEEEEEe-CCeEEEEEecCcccCCCCcchHHHHHhcC
Q 036428           76 VQDRDHEFLSKAVEEAYKGVECGDGGPFGAVVVR-SDEVVVSCHNMVLKHTDPTAHAEVTAVRE  138 (138)
Q Consensus        76 ~~~~D~~~Mr~AIelA~ka~~~g~~~PVGAVIV~-dGeIIa~G~N~~~~~~DpTaHAE~~AIr~  138 (138)
                      ..++|..||++|+++|+++...|+ .|||||||+ +|+||+.|+|+..+.+||++|||+.|||+
T Consensus         4 ~~~~~~~~m~~al~~A~~a~~~ge-~PvGaviV~~~~~ii~~~~N~~~~~~dptaHAEi~air~   66 (152)
T COG0590           4 LSEKDEDFMREALKEAKKAGDEGE-VPVGAVIVDADGEIIARGHNRREEDNDPTAHAEILAIRA   66 (152)
T ss_pred             hhhhhHHHHHHHHHHHHHHHhcCC-CCEEEEEEcCCCCEEEEecCccccCCCccccHHHHHHHH
Confidence            346789999999999999997665 999999999 99999999999999999999999999984

>TIGR02571 ComEB ComE operon protein 2

Probab=99.52  E-value=3.1e-14  Score=109.63  Aligned_cols=59  Identities=22%  Similarity=0.222  Sum_probs=51.5

Q ss_pred             chhHHHHHHHHHHHHHhcccCCCCCcEEEEEEeCCeEEEEEecCcccCC---------------CCcchHHHHHhc
Q 036428           77 QDRDHEFLSKAVEEAYKGVECGDGGPFGAVVVRSDEVVVSCHNMVLKHT---------------DPTAHAEVTAVR  137 (138)
Q Consensus        77 ~~~D~~~Mr~AIelA~ka~~~g~~~PVGAVIV~dGeIIa~G~N~~~~~~---------------DpTaHAE~~AIr  137 (138)
                      +.+|++||++|+++|+++.+ . +.|||||||+||+||++|||+..+..               +++.|||++||+
T Consensus         3 ~~~d~~fM~~A~~~A~rs~~-~-~~~VGAVIV~d~~IIs~GyN~~~~g~~~~~~~~~~~~~~~~~~~~HAE~nAI~   76 (151)
T TIGR02571         3 IKWDQYFMAQSHLLALRSTC-T-RLSVGATIVRDKRIIAGGYNGSVAGGVHCIDEGCYVVDGHCVRTIHAEMNALL   76 (151)
T ss_pred             CcHHHHHHHHHHHHHHhcCC-C-CCCEEEEEEECCEEEEEEECCCCCCCCccccccccccccccCCccCHHHHHHH
Confidence            46789999999999999854 3 48999999999999999999986543               588999999996

This protein is found in the ComE operon for "late competence" as characterized in B. subtilis. Proteins in this family contain homology to a cytidine/deoxycytidine deaminase domain family (pfam00383), and may carry out this activity.

>cd01286 deoxycytidylate_deaminase Deoxycytidylate deaminase domain

Probab=99.46  E-value=1.2e-13  Score=103.36  Aligned_cols=56  Identities=25%  Similarity=0.258  Sum_probs=49.3

Q ss_pred             HHHHHHHHHHHHHhcccCCCCCcEEEEEEeCCeEEEEEecCcc---------------------cCCCCcchHHHHHhc
Q 036428           80 DHEFLSKAVEEAYKGVECGDGGPFGAVVVRSDEVVVSCHNMVL---------------------KHTDPTAHAEVTAVR  137 (138)
Q Consensus        80 D~~~Mr~AIelA~ka~~~g~~~PVGAVIV~dGeIIa~G~N~~~---------------------~~~DpTaHAE~~AIr  137 (138)
                      |+.||++|+++|+++...  +.|||||||++|+||++|||+..                     ...+++.|||++||+
T Consensus         1 d~~~m~~A~~~A~~s~~~--~~~VGAViv~~~~iI~~G~N~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~HAE~~Ai~   77 (131)
T cd01286           1 DEYFMAIARLAALRSTCP--RRQVGAVIVKDKRIISTGYNGSPSGLPHCAEVGCERDDLPSGEDQKCCRTVHAEQNAIL   77 (131)
T ss_pred             CHHHHHHHHHHHHHcCCC--CCCEEEEEEECCEEEEEeeCCCCCCCCCcccccccccccccccccccCCCCCHHHHHHH
Confidence            467999999999998763  49999999999999999999975                     356799999999996

Deoxycytidylate deaminase catalyzes the deamination of dCMP to dUMP, providing the nucleotide substrate for thymidylate synthase. The enzyme binds Zn++, which is required for catalytic activity. The activity of the enzyme is allosterically regulated by the ratio of dCTP to dTTP not only in eukaryotic cells but also in T-even phage-infected Escherichia coli, with dCTP acting as an activator and dTTP as an inhibitor.

>COG0117 RibD Pyrimidine deaminase [Coenzyme metabolism]

Probab=99.45  E-value=2e-13  Score=105.69  Aligned_cols=58  Identities=29%  Similarity=0.375  Sum_probs=50.9

Q ss_pred             chhHHHHHHHHHHHHHhcccCC-CCCcEEEEEEeCCeEEEEEecCcccCCCCcchHHHHHhcC
Q 036428           77 QDRDHEFLSKAVEEAYKGVECG-DGGPFGAVVVRSDEVVVSCHNMVLKHTDPTAHAEVTAVRE  138 (138)
Q Consensus        77 ~~~D~~~Mr~AIelA~ka~~~g-~~~PVGAVIV~dGeIIa~G~N~~~~~~DpTaHAE~~AIr~  138 (138)
                      .+.|+.||++|+++|+++.... +|++||||||+||+||++|++...    +.+|||+.||++
T Consensus         3 ~~~~~~~M~~Al~lA~k~~g~T~pNP~VG~VIV~~~~Ivg~G~h~~a----G~pHAEv~Al~~   61 (146)
T COG0117           3 SELDERYMERALELAEKGQGTTSPNPSVGCVIVKDGEIVGEGYHEKA----GGPHAEVCALRM   61 (146)
T ss_pred             chHHHHHHHHHHHHHHhcCCcCCCCCceeEEEEECCEEEeeeecCCC----CCCcHHHHHHHH
Confidence            3568999999999999977654 689999999999999999999874    568999999974

>KOG1018 consensus Cytosine deaminase FCY1 and related enzymes [Nucleotide transport and metabolism]

Probab=99.45  E-value=1.4e-13  Score=108.36  Aligned_cols=62  Identities=52%  Similarity=0.708  Sum_probs=58.0

Q ss_pred             chhHHHHHHHHHHHHHhcccCCCCCcEEEEEEe-CCeEEEEEecCcccCCCCcchHHHHHhcC
Q 036428           77 QDRDHEFLSKAVEEAYKGVECGDGGPFGAVVVR-SDEVVVSCHNMVLKHTDPTAHAEVTAVRE  138 (138)
Q Consensus        77 ~~~D~~~Mr~AIelA~ka~~~g~~~PVGAVIV~-dGeIIa~G~N~~~~~~DpTaHAE~~AIr~  138 (138)
                      .+.|.+||+.|+++|+++.+.+.++|||||+|+ ||+|+++|+|++.+.+|+|+|||+.+|++
T Consensus         8 ~~~~~~~m~~a~eea~ka~d~~~~~pvg~vlV~~~g~v~a~g~n~~~~~~d~t~HaE~~~I~~   70 (169)
T KOG1018|consen    8 SDHDIAFMVEAVEEAKKALDEGDEVPVGAVLVHMDGKVLASGGNMVNEKKDPTAHAEVIAIRE   70 (169)
T ss_pred             ccccHHHHHHHHHHHHhhccCCCCCceEEEEEeCCCeEEecccceecccCCcchhhHHHHHhh
Confidence            456899999999999999999956999999999 99999999999999999999999999974

>PF00383 dCMP_cyt_deam_1: Cytidine and deoxycytidylate deaminase zinc-binding region; InterPro: IPR002125 Cytidine deaminase (3

Probab=99.45  E-value=2.1e-13  Score=95.30  Aligned_cols=59  Identities=36%  Similarity=0.563  Sum_probs=53.3

Q ss_pred             hhHHHHHHHHHHHHHhcccCCCCCcEEEEEEe-CCeEEEEEecCcccCCCCcchHHHHHhc
Q 036428           78 DRDHEFLSKAVEEAYKGVECGDGGPFGAVVVR-SDEVVVSCHNMVLKHTDPTAHAEVTAVR  137 (138)
Q Consensus        78 ~~D~~~Mr~AIelA~ka~~~g~~~PVGAVIV~-dGeIIa~G~N~~~~~~DpTaHAE~~AIr  137 (138)
                      ++|++||++|+++|+++...+ +.|||||||+ +|++|+.|+|......+++.|||++||.
T Consensus         2 ~~~~~~m~~a~~~a~~s~~~~-~~~vgaviv~~~~~~i~~g~n~~~~~~~~~~HAE~~Ai~   61 (102)
T PF00383_consen    2 EWDEEFMRIAIELAKRSRPCG-NFPVGAVIVDPDGKIIATGYNGEPPGKNPTIHAEMNAIR   61 (102)
T ss_dssp             CHHHHHHHHHHHHHHTHBTTT-SSSEEEEEEETTTEEEEEEESBHHSTTGGTB-HHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhccccC-CCCEEEEEEeccCccEEEEeeeeeeeccccccchhhhhh
Confidence            579999999999999998555 4999999999 8999999999999889999999999986

5.4.5 from EC) (cytidine aminohydrolase) catalyzes the hydrolysis of cytidine into uridine and ammonia while deoxycytidylate deaminase (3.5.4.12 from EC) (dCMP deaminase) hydrolyzes dCMP into dUMP. Both enzymes are known to bind zinc and to require it for their catalytic activity [, ]. These two enzymes do not share any sequence similarity with the exception of a region that contains three conserved histidine and cysteine residues which are thought to be involved in the binding of the catalytic zinc ion. Such a region is also found in other proteins [, ]: Yeast cytosine deaminase (3.5.4.1 from EC) (gene FCY1) which transforms cytosine into uracil. Mammalian apolipoprotein B mRNA editing protein, responsible for the postranscriptional editing of a CAA codon into a UAA (stop) codon in the APOB mRNA. Riboflavin biosynthesis protein ribG, which converts 2,5-diamino-6-(ribosylamino)-4(3H)-pyrimidinone 5'-phosphate into 5-amino-6-(ribosylamino)-2,4(1H,3H)-pyrimidinedione 5'-phosphate. Bacillus cereus blasticidin-S deaminase (3.5.4.23 from EC), which catalyzes the deamination of the cytosine moiety of the antibiotics blasticidin S, cytomycin and acetylblasticidin S. Bacillus subtilis protein comEB. This protein is required for the binding and uptake of transforming DNA. B. subtilis hypothetical protein yaaJ. Escherichia coli hypothetical protein yfhC. Yeast hypothetical protein YJL035c. ; GO: 0008270 zinc ion binding, 0016787 hydrolase activity; PDB: 3MPZ_C 3R2N_C 1WKQ_A 1TIY_B 2B3J_C 2O7P_B 2OBC_A 2G6V_B 2D30_B 2D5N_B ....

>cd01285 nucleoside_deaminase Nucleoside deaminases include adenosine, guanine and cytosine deaminases

Probab=99.44  E-value=1.3e-13  Score=99.33  Aligned_cols=54  Identities=44%  Similarity=0.668  Sum_probs=49.9

Q ss_pred             HHHHHHHHHhcccCCCCCcEEEEEEeC-CeEEEEEecCcccCCCCcchHHHHHhcC
Q 036428           84 LSKAVEEAYKGVECGDGGPFGAVVVRS-DEVVVSCHNMVLKHTDPTAHAEVTAVRE  138 (138)
Q Consensus        84 Mr~AIelA~ka~~~g~~~PVGAVIV~d-GeIIa~G~N~~~~~~DpTaHAE~~AIr~  138 (138)
                      |++|+++|+++...++ .||||+||++ |+||++|+|+..+.+|++.|||++||++
T Consensus         1 m~~al~~a~~~~~~~~-~~vgaviv~~~~~ii~~g~n~~~~~~~~~~HAE~~ai~~   55 (109)
T cd01285           1 MRLAIELARKALAEGE-VPFGAVIVDDDGKVIARGHNRVEQDGDPTAHAEIVAIRN   55 (109)
T ss_pred             CHHHHHHHHHHHHcCC-CcEEEEEEeCCCEEEEEEeCCCCCCCCCcccHHHHHHHH
Confidence            6899999999988775 9999999985 9999999999999999999999999974

These enzymes are Zn dependent and catalyze the deamination of nucleosides. The zinc ion in the active site plays a central role in the proposed catalytic mechanism, activating a water molecule to form a hydroxide ion that performs a nucleophilic attack on the substrate. The functional enzyme is a homodimer. Cytosine deaminase catalyzes the deamination of cytosine to uracil and ammonia and is a member of the pyrimidine salvage pathway. Cytosine deaminase is found in bacteria and fungi but is not present in mammals; for this reason, the enzyme is currently of interest for antimicrobial drug design and gene therapy applications against tumors. Some members of this family are tRNA-specific adenosine deaminases that generate inosine at the first position of their anticodon (position 34) of specific tRNAs; this modification is thought to enlarge the codon recognition capacity during protei

>PHA02588 cd deoxycytidylate deaminase; Provisional

Probab=99.43  E-value=3.3e-13  Score=105.42  Aligned_cols=57  Identities=19%  Similarity=0.201  Sum_probs=49.5

Q ss_pred             hHHHHHHHHHHHHHhcccCCCCCcEEEEEEeCCeEEEEEecCcccC--------------------------------CC
Q 036428           79 RDHEFLSKAVEEAYKGVECGDGGPFGAVVVRSDEVVVSCHNMVLKH--------------------------------TD  126 (138)
Q Consensus        79 ~D~~~Mr~AIelA~ka~~~g~~~PVGAVIV~dGeIIa~G~N~~~~~--------------------------------~D  126 (138)
                      .|++||++|+++|+++.. . +.|||||||+||+||++|||.....                                .+
T Consensus         2 ~d~~fM~~A~~~A~~s~~-~-~~~VGAVIV~~~~Iis~GyNg~p~g~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   79 (168)
T PHA02588          2 KDSTYLQIAYLVSQESKC-V-SWKVGAVIEKNGRIISTGYNGTPAGGVNCCDHANEQGWLDDEGKLKKEHRPEHSAWSSK   79 (168)
T ss_pred             CHHHHHHHHHHHHHhcCC-C-CCCEEEEEEECCEEEEEEeCCCCcCCcccccccccccccccccccccccccccccccCC
Confidence            478899999999999965 3 4899999999999999999987543                                36


Q ss_pred             CcchHHHHHhc
Q 036428          127 PTAHAEVTAVR  137 (138)
Q Consensus       127 pTaHAE~~AIr  137 (138)
                      ++.|||++||+
T Consensus        80 ~~~HAE~nAi~   90 (168)
T PHA02588         80 NEIHAELNAIL   90 (168)
T ss_pred             CCccHHHHHHH
Confidence            78999999996

>PLN02807 diaminohydroxyphosphoribosylaminopyrimidine deaminase

Probab=99.36  E-value=1.7e-12  Score=112.46  Aligned_cols=58  Identities=29%  Similarity=0.429  Sum_probs=50.3

Q ss_pred             chhHHHHHHHHHHHHHhcccCCC-CCcEEEEEEeCCeEEEEEecCcccCCCCcchHHHHHhcC
Q 036428           77 QDRDHEFLSKAVEEAYKGVECGD-GGPFGAVVVRSDEVVVSCHNMVLKHTDPTAHAEVTAVRE  138 (138)
Q Consensus        77 ~~~D~~~Mr~AIelA~ka~~~g~-~~PVGAVIV~dGeIIa~G~N~~~~~~DpTaHAE~~AIr~  138 (138)
                      +.+|++||++|+++|+++...+. ++|||||||+||+||++|||+..    ++.|||++||++
T Consensus        29 ~~~d~~~M~~Al~lA~~~~~~~~~np~VGaViV~~g~Ii~~g~n~~~----g~~HAEi~Ai~~   87 (380)
T PLN02807         29 GDDDSFYMRRCVELARKAIGCTSPNPMVGCVIVKDGRIVGEGFHPKA----GQPHAEVFALRD   87 (380)
T ss_pred             CchHHHHHHHHHHHHHhhcccCCCCCCEEEEEEECCEEEEEEeCCCC----CCcCHHHHHHHH
Confidence            35688999999999999987663 57899999999999999999873    568999999974

>cd01284 Riboflavin_deaminase-reductase Riboflavin-specific deaminase

Probab=99.35  E-value=1.2e-12  Score=96.64  Aligned_cols=50  Identities=32%  Similarity=0.416  Sum_probs=44.3

Q ss_pred             HHHHHHHHHhc--ccCCCCCcEEEEEEeC-CeEEEEEecCcccCCCCcchHHHHHhcC
Q 036428           84 LSKAVEEAYKG--VECGDGGPFGAVVVRS-DEVVVSCHNMVLKHTDPTAHAEVTAVRE  138 (138)
Q Consensus        84 Mr~AIelA~ka--~~~g~~~PVGAVIV~d-GeIIa~G~N~~~~~~DpTaHAE~~AIr~  138 (138)
                      |++|+++|+++  ...++ .|||||||++ |+||++|+|+..    ++.|||++||++
T Consensus         1 m~~al~~A~~~~~~~~~~-~pvGaviv~~~g~iv~~g~n~~~----~~~HAE~~ai~~   53 (115)
T cd01284           1 MRRALELAEKGRGLTSPN-PPVGCVIVDDDGEIVGEGYHRKA----GGPHAEVNALAS   53 (115)
T ss_pred             CHHHHHHHHhcccccCCC-CCEEEEEEeCCCeEEEEecCCCC----CcccHHHHHHHH
Confidence            78999999999  55554 9999999985 999999999974    899999999974

Riboflavin biosynthesis protein RibD (Diaminohydroxyphosphoribosylaminopyrimidine deaminase) catalyzes the deamination of 2,5-diamino-6-ribosylamino-4(3H)-pyrimidinone 5'-phosphate, which is an intermediate step in the biosynthesis of riboflavin.The ribG gene of Bacillus subtilis and the ribD gene of E. coli are bifunctional and contain this deaminase domain and a reductase domain which catalyzes the subsequent reduction of the ribosyl side chain.

>cd00786 cytidine_deaminase-like Cytidine and deoxycytidylate deaminase zinc-binding region

Probab=99.35  E-value=1.2e-12  Score=92.63  Aligned_cols=54  Identities=24%  Similarity=0.165  Sum_probs=48.5

Q ss_pred             HHHHHHHHHhcc-cCCCCCcEEEEEEeC--CeEEEEEecCcccCCCCcchHHHHHhcC
Q 036428           84 LSKAVEEAYKGV-ECGDGGPFGAVVVRS--DEVVVSCHNMVLKHTDPTAHAEVTAVRE  138 (138)
Q Consensus        84 Mr~AIelA~ka~-~~g~~~PVGAVIV~d--GeIIa~G~N~~~~~~DpTaHAE~~AIr~  138 (138)
                      |++|+++|+++. ..+ +.||||+||++  |+++++|+|...+.+|++.|||++||++
T Consensus         1 m~~a~~~a~~a~~~~~-~~pVGaviv~~~~g~ii~~g~n~~~~~~~~~~HAE~~ai~~   57 (96)
T cd00786           1 MTEALKAADLGYAKES-NFQVGACLVNKKDGGKVGRGCNIENAAYSMCNHAERTALFN   57 (96)
T ss_pred             CHHHHHHHHhccCCCC-CCCEEEEEEEeCCCCeEeeeEeccCCCCCCeeCHHHHHHHH
Confidence            789999999994 445 59999999975  9999999999999999999999999973

The family contains cytidine deaminases, nucleoside deaminases, deoxycytidylate deaminases and riboflavin deaminases. Also included are the apoBec family of mRNA editing enzymes. All members are Zn dependent. The zinc ion in the active site plays a central role in the proposed catalytic mechanism, activating a water molecule to form a hydroxide ion that performs a nucleophilic attack on the substrate.

>PRK10786 ribD bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase; Provisional

Probab=99.31  E-value=3.7e-12  Score=109.34  Aligned_cols=56  Identities=27%  Similarity=0.344  Sum_probs=48.2

Q ss_pred             hHHHHHHHHHHHHHhcccCC-CCCcEEEEEEeCCeEEEEEecCcccCCCCcchHHHHHhcC
Q 036428           79 RDHEFLSKAVEEAYKGVECG-DGGPFGAVVVRSDEVVVSCHNMVLKHTDPTAHAEVTAVRE  138 (138)
Q Consensus        79 ~D~~~Mr~AIelA~ka~~~g-~~~PVGAVIV~dGeIIa~G~N~~~~~~DpTaHAE~~AIr~  138 (138)
                      .|++||++|+++|+++...+ +++|||||||+||+||++|||+..    ++.|||++||++
T Consensus         2 ~d~~~m~~A~~~A~~~~~~~~~~~~vGaviv~~g~ii~~g~n~~~----g~~HAE~~ai~~   58 (367)
T PRK10786          2 QDEFYMARALKLAQRGRFTTHPNPNVGCVIVKDGEIVGEGYHQRA----GEPHAEVHALRM   58 (367)
T ss_pred             CHHHHHHHHHHHHHhcCcCCCCCCCEEEEEEeCCEEEEEEeCCCC----CCCCHHHHHHHH
Confidence            36889999999999997543 459999999999999999999863    468999999974

>TIGR00326 eubact_ribD riboflavin biosynthesis protein RibD

Probab=99.26  E-value=7.5e-12  Score=105.77  Aligned_cols=51  Identities=29%  Similarity=0.393  Sum_probs=45.8

Q ss_pred             HHHHHHHHHhcccCC-CCCcEEEEEEeCCeEEEEEecCcccCCCCcchHHHHHhcC
Q 036428           84 LSKAVEEAYKGVECG-DGGPFGAVVVRSDEVVVSCHNMVLKHTDPTAHAEVTAVRE  138 (138)
Q Consensus        84 Mr~AIelA~ka~~~g-~~~PVGAVIV~dGeIIa~G~N~~~~~~DpTaHAE~~AIr~  138 (138)
                      |++|+++|+++...+ +++|||||||+||+||++|||+.    .++.|||++||++
T Consensus         1 m~~a~~~a~~~~~~~~~~~~vGaviv~~~~ii~~g~n~~----~~~~HAE~~ai~~   52 (344)
T TIGR00326         1 MNRALDLAKKGQGTTHPNPLVGCVIVKNGEIVGEGAHQK----AGEPHAEVHALRQ   52 (344)
T ss_pred             CHHHHHHHHhcCCCCCCCCCEEEEEEeCCEEEEEeeCCC----CCCCCHHHHHHHH
Confidence            889999999998765 35899999999999999999986    4789999999974

This model describes the ribD protein as found in Escherichia coli. The N-terminal domain includes the conserved zinc-binding site region captured in the model dCMP_cyt_deam and shared by proteins such as cytosine deaminase, mammalian apolipoprotein B mRNA editing protein, blasticidin-S deaminase, and Bacillus subtilis competence protein comEB. The C-terminal domain is homologous to the full length of yeast HTP reductase, a protein required for riboflavin biosynthesis. A number of archaeal proteins believed related to riboflavin biosynthesis contain only this C-terminal domain and are not found as full-length matches to this model.

>COG2131 ComEB Deoxycytidylate deaminase [Nucleotide transport and metabolism]

Probab=98.80  E-value=1.4e-08  Score=80.08  Aligned_cols=57  Identities=26%  Similarity=0.260  Sum_probs=48.6

Q ss_pred             hhHHHHHHHHHHHHHhcccCCCCCcEEEEEEeCCeEEEEEecCcccCCC----------------------CcchHHHHH
Q 036428           78 DRDHEFLSKAVEEAYKGVECGDGGPFGAVVVRSDEVVVSCHNMVLKHTD----------------------PTAHAEVTA  135 (138)
Q Consensus        78 ~~D~~~Mr~AIelA~ka~~~g~~~PVGAVIV~dGeIIa~G~N~~~~~~D----------------------pTaHAE~~A  135 (138)
                      .+|++||+.|...|.++.+..  .-||||||+|++||+.|||......+                      -+-|||++|
T Consensus         7 ~wdeyfm~~A~l~a~Rstc~r--~~VGAvIvkd~rIiatGYNG~p~g~~~c~~~g~~~~~~~~~~~~~~~~r~vHAE~NA   84 (164)
T COG2131           7 MWDEYFMAIAELVALRSTCPR--RQVGAVIVKDGRIIATGYNGAPSGEDHCIDRGCLRDKVVFVTTCGHCCRTLHAEQNA   84 (164)
T ss_pred             HHHHHHHHHHHHHHHHccCcc--cceeEEEEeCCeEEEeecCCCCcccCCcCccCceecccccccchhHHHHHHHHHHHH
Confidence            589999999999999988753  77999999999999999998866432                      156999999


Q ss_pred             h
Q 036428          136 V  136 (138)
Q Consensus       136 I  136 (138)
                      |
T Consensus        85 i   85 (164)
T COG2131          85 I   85 (164)
T ss_pred             H
Confidence            7

>cd01283 cytidine_deaminase Cytidine deaminase zinc-binding domain

Probab=98.59  E-value=9.8e-08  Score=68.66  Aligned_cols=52  Identities=19%  Similarity=0.064  Sum_probs=44.1

Q ss_pred             HHHHHHHHhcccCCCCCcEEEEEEe-CCeEEEEEecCcccCCCCcchHHHHHhc
Q 036428           85 SKAVEEAYKGVECGDGGPFGAVVVR-SDEVVVSCHNMVLKHTDPTAHAEVTAVR  137 (138)
Q Consensus        85 r~AIelA~ka~~~g~~~PVGAVIV~-dGeIIa~G~N~~~~~~DpTaHAE~~AIr  137 (138)
                      ++|++.++++.....+.||||+++. +|+|+ .|+|......+++.|||+.||+
T Consensus         2 ~~a~~~~~~a~~~~~~~~vga~i~~~~g~i~-~G~n~e~~~~~~~~hAE~~ai~   54 (112)
T cd01283           2 EAALAAAEFAYAPYSNFTVGAALLTKDGRIF-TGVNVENASYGLTLCAERTAIG   54 (112)
T ss_pred             HHHHHHHHhCcCCCCCCeEEEEEEECCCCEE-EeEEeecCCCCCCcCHHHHHHH
Confidence            4678888888555446999999996 68887 8999998889999999999986

These enzymes are Zn dependent. The zinc ion in the active site plays a central role in the proposed catalytic mechanism, activating a water molecule to form a hydroxide ion that performs a nucleophilic attack on the substrate. Cytidine deaminases catalyze the deamination of cytidine to uridine and are important in the pyrimadine salvage pathway in many cell types, from bacteria to humans. This family also includes the apoBec proteins, which are a mammal specific expansion of RNA editing enzymes, and the closely related phorbolins, and the AID (activation-induced) enzymes.

>TIGR01354 cyt_deam_tetra cytidine deaminase, homotetrameric

Probab=98.41  E-value=6.8e-07  Score=66.72  Aligned_cols=54  Identities=17%  Similarity=0.076  Sum_probs=47.2

Q ss_pred             HHHHHHHHHHhcccCCCCCcEEEEEEe-CCeEEEEEecCcccCCCCcchHHHHHhc
Q 036428           83 FLSKAVEEAYKGVECGDGGPFGAVVVR-SDEVVVSCHNMVLKHTDPTAHAEVTAVR  137 (138)
Q Consensus        83 ~Mr~AIelA~ka~~~g~~~PVGAVIV~-dGeIIa~G~N~~~~~~DpTaHAE~~AIr  137 (138)
                      ..+.|.+.+++++....+.||||+++. ||+|+. |.|......+++.|||+.||+
T Consensus         3 l~~~a~~a~~~ay~PyS~~~vgAa~~~~~G~i~~-G~n~e~~~~~~s~~AE~~Ai~   57 (127)
T TIGR01354         3 LFKAAQEARKNAYAPYSNFKVGAALLTKDGRIFT-GVNVENASYPLTICAERSAIG   57 (127)
T ss_pred             HHHHHHHHHHhcCCCcCCCeEEEEEEeCCCCEEE-EEeecccCCCCCcCHHHHHHH
Confidence            567888899999876556999999996 789888 999998889999999999986

This small, homotetrameric zinc metalloprotein is found in humans and most bacteria. A related, homodimeric form with a much larger subunit is found in E. coli and in Arabidopsis. Both types may act on deoxycytidine as well as cytidine.

>KOG3127 consensus Deoxycytidylate deaminase [Nucleotide transport and metabolism]

Probab=98.38  E-value=8.9e-07  Score=73.01  Aligned_cols=64  Identities=20%  Similarity=0.211  Sum_probs=51.6

Q ss_pred             ccccCchhHHHHHHHHHHHHHhcccCCCCCcEEEEEEe-CCeEEEEEecCcccCCC--------------------Ccch
Q 036428           72 HQEAVQDRDHEFLSKAVEEAYKGVECGDGGPFGAVVVR-SDEVVVSCHNMVLKHTD--------------------PTAH  130 (138)
Q Consensus        72 ~~~~~~~~D~~~Mr~AIelA~ka~~~g~~~PVGAVIV~-dGeIIa~G~N~~~~~~D--------------------pTaH  130 (138)
                      .+....+||.+||+.|...|+++.+.  +..|||+||. ++.||+.|||......+                    -+-|
T Consensus        59 k~~~~lswd~yFM~iA~LsA~RSkDp--ntqVGaCiv~~~n~iVg~GYNgfP~gc~~~vfp~~~~~~~~~~~~k~~yv~H  136 (230)
T KOG3127|consen   59 KRNGYLSWDDYFMAIAFLSAKRSKDP--NTQVGACIVDRENRIVGTGYNGFPRGCSDDVFPWCKAALSTNLDLKYCYVVH  136 (230)
T ss_pred             ccccCccHHHHHHHHHHHHHHhccCc--ccceeeEEEcCCCEEEEeccCCCcCCCCCCCCcccccccccCCCcceEEEee
Confidence            34556889999999999999998764  4889977775 89999999998765421                    2579


Q ss_pred             HHHHHhc
Q 036428          131 AEVTAVR  137 (138)
Q Consensus       131 AE~~AIr  137 (138)
                      ||.+||-
T Consensus       137 AE~NAi~  143 (230)
T KOG3127|consen  137 AEENAIL  143 (230)
T ss_pred             hHHHHHH
Confidence            9999984

>PRK06848 hypothetical protein; Validated

Probab=97.25  E-value=0.0013  Score=50.21  Aligned_cols=58  Identities=19%  Similarity=0.139  Sum_probs=47.9

Q ss_pred             chhHHHHHHHHHHHHHhcccCCCCCcEEEEEEe-CCeEEEEEecCcccCCCCcchHHHHHh
Q 036428           77 QDRDHEFLSKAVEEAYKGVECGDGGPFGAVVVR-SDEVVVSCHNMVLKHTDPTAHAEVTAV  136 (138)
Q Consensus        77 ~~~D~~~Mr~AIelA~ka~~~g~~~PVGAVIV~-dGeIIa~G~N~~~~~~DpTaHAE~~AI  136 (138)
                      ++.++++++.|.+..++++.. .+.+|||++.. ||+|. .|.|-.......+-|||..||
T Consensus         4 ~~~~~~L~~~A~~a~~~ay~p-s~f~VgAa~l~~~G~i~-~G~NvEnas~~~tiCAEr~Ai   62 (139)
T PRK06848          4 NSEDYELIKAAEKVIEKRYRN-DWHHVGAALRTKTGRIY-AAVHLEAYVGRITVCAEAIAI   62 (139)
T ss_pred             CHHHHHHHHHHHHHHHhccCC-CCCcEEEEEEeCCCCEE-EEEEeecCCCCcccCHHHHHH
Confidence            345678999999999999876 56999999996 77754 899987767778999999987

>PRK05578 cytidine deaminase; Validated

Probab=96.67  E-value=0.0077  Score=45.57  Aligned_cols=56  Identities=23%  Similarity=0.191  Sum_probs=45.1

Q ss_pred             HHHHHHHHHHHHHhcccCCCCCcEEEEEEe-CCeEEEEEecCcccCCCCcchHHHHHh
Q 036428           80 DHEFLSKAVEEAYKGVECGDGGPFGAVVVR-SDEVVVSCHNMVLKHTDPTAHAEVTAV  136 (138)
Q Consensus        80 D~~~Mr~AIelA~ka~~~g~~~PVGAVIV~-dGeIIa~G~N~~~~~~DpTaHAE~~AI  136 (138)
                      .++++++|.+..++++....+.+|||++.. +|+ +-.|.|-......++-|||..||
T Consensus         3 ~~~L~~~a~~~~~~ay~PyS~f~Vgaa~~~~~G~-i~~G~nvEna~~~~~~CAE~~Ai   59 (131)
T PRK05578          3 WKELIEAAIEASEKAYAPYSKFPVGAALLTDDGR-IYTGCNIENASYGLTNCAERTAI   59 (131)
T ss_pred             HHHHHHHHHHHHHhcCCCcCCCceEEEEEeCCCC-EEEEEEeeCccccCCcCHHHHHH
Confidence            346788899998888876556899999996 666 66799977666678999999987

>PRK12411 cytidine deaminase; Provisional

Probab=96.16  E-value=0.025  Score=42.87  Aligned_cols=55  Identities=18%  Similarity=0.114  Sum_probs=44.5

Q ss_pred             HHHHHHHHHHHHhcccCCCCCcEEEEEEe-CCeEEEEEecCcccCCCCcchHHHHHh
Q 036428           81 HEFLSKAVEEAYKGVECGDGGPFGAVVVR-SDEVVVSCHNMVLKHTDPTAHAEVTAV  136 (138)
Q Consensus        81 ~~~Mr~AIelA~ka~~~g~~~PVGAVIV~-dGeIIa~G~N~~~~~~DpTaHAE~~AI  136 (138)
                      +.+.++|.+.+++++..-.+.+|||++.. ||+|+ .|.|-......++-|||..||
T Consensus         4 ~~L~~~a~~~~~~ay~pyS~~~VgAa~~t~~G~i~-~G~nvEn~s~~~s~CAE~~Ai   59 (132)
T PRK12411          4 KQLIQEAIEARKQAYVPYSKFQVGAALLTQDGKVY-RGCNVENASYGLCNCAERTAL   59 (132)
T ss_pred             HHHHHHHHHHHHhcCCCccCCceEEEEEeCCCCEE-EEEEeecCCCCcCcCHHHHHH
Confidence            46788899999988876445899999985 77755 899977666778999999987

>COG0295 Cdd Cytidine deaminase [Nucleotide transport and metabolism]

Probab=95.82  E-value=0.037  Score=42.53  Aligned_cols=56  Identities=21%  Similarity=0.086  Sum_probs=43.4

Q ss_pred             HHHHHHHHHHHhcccCCCCCcEEEEEEeCCeEEEEEecCcccCCCCcchHHHHHhc
Q 036428           82 EFLSKAVEEAYKGVECGDGGPFGAVVVRSDEVVVSCHNMVLKHTDPTAHAEVTAVR  137 (138)
Q Consensus        82 ~~Mr~AIelA~ka~~~g~~~PVGAVIV~dGeIIa~G~N~~~~~~DpTaHAE~~AIr  137 (138)
                      ..+..+.+.+..++..-.+.||||++..++.-+-.|.|-....-.-|.|||..||-
T Consensus         7 ~l~~~a~~a~~~ay~PYS~F~VGAa~~t~~G~i~tG~NiEnasy~~t~CAErsAI~   62 (134)
T COG0295           7 ELFALAPEAAANAYAPYSKFKVGAALRTKDGRIYTGANVENASYGLTVCAERSAIF   62 (134)
T ss_pred             HHHHHHHHHHHhccCcccCCcEEEEEEeCCCCEEEEEeeecccccchhhHHHHHHH
Confidence            45666777777777655569999999964434678999888888889999999983

>PRK08298 cytidine deaminase; Validated

Probab=95.06  E-value=0.1  Score=39.89  Aligned_cols=55  Identities=9%  Similarity=-0.003  Sum_probs=43.7

Q ss_pred             hHHHHHHHHHHHHHhcccCCCCCcEEEEEEe-CCeEEEEEecCcccCCCCcchHHHHHh
Q 036428           79 RDHEFLSKAVEEAYKGVECGDGGPFGAVVVR-SDEVVVSCHNMVLKHTDPTAHAEVTAV  136 (138)
Q Consensus        79 ~D~~~Mr~AIelA~ka~~~g~~~PVGAVIV~-dGeIIa~G~N~~~~~~DpTaHAE~~AI  136 (138)
                      .++++++.|.+..++++... . +|||.|.. ||+|+ .|.|-...+...+.-||..||
T Consensus         3 ~~~~L~~~A~~a~~~aY~PY-S-~VgAAllt~dG~i~-tG~NvEnas~~~t~CAEr~Ai   58 (136)
T PRK08298          3 IEQALYDVAKQLIEQRYPNG-W-GGAAAMRVEDGTIL-TSVAPEVINASTELCMETGAI   58 (136)
T ss_pred             HHHHHHHHHHHHHHhccCCC-C-ceeEEEEeCCCCEE-EEEeecCCCCCcchhHHHHHH
Confidence            35678899999888887644 3 99999985 77755 899977666668899999987

>PLN02402 cytidine deaminase

Probab=94.67  E-value=0.11  Score=44.68  Aligned_cols=57  Identities=18%  Similarity=0.169  Sum_probs=48.7

Q ss_pred             HHHHHHHHHHHHHhcccCCCCCcEEEEEEe-CCeEEEEEecCcccCCCCcchHHHHHhc
Q 036428           80 DHEFLSKAVEEAYKGVECGDGGPFGAVVVR-SDEVVVSCHNMVLKHTDPTAHAEVTAVR  137 (138)
Q Consensus        80 D~~~Mr~AIelA~ka~~~g~~~PVGAVIV~-dGeIIa~G~N~~~~~~DpTaHAE~~AIr  137 (138)
                      ++.+++.|++.+++++..-.+.||||.|+. ||+| -.|.|-....-+++.+||..||-
T Consensus       192 ~~~L~~~A~~a~~~sYaPYS~f~VGaal~~~dG~i-~~G~nvENAay~~slcAer~Ai~  249 (303)
T PLN02402        192 SDDLKNEALEAANKSHAPYSNCPSGVALMDCEGKV-YRGSYMESAAYNPSMGPVQAALV  249 (303)
T ss_pred             HHHHHHHHHHHHHcccCCccCCceeEEEEeCCCCE-EEEEEEEcCCCCCcccHHHHHHH
Confidence            467899999999999987667999999996 7785 47999888888999999999973

>TIGR01355 cyt_deam_dimer cytidine deaminase, homodimeric

Probab=94.50  E-value=0.14  Score=43.72  Aligned_cols=57  Identities=12%  Similarity=0.101  Sum_probs=48.4

Q ss_pred             HHHHHHHHHHHHHhcccCCCCCcEEEEEEe-CCeEEEEEecCcccCCCCcchHHHHHhc
Q 036428           80 DHEFLSKAVEEAYKGVECGDGGPFGAVVVR-SDEVVVSCHNMVLKHTDPTAHAEVTAVR  137 (138)
Q Consensus        80 D~~~Mr~AIelA~ka~~~g~~~PVGAVIV~-dGeIIa~G~N~~~~~~DpTaHAE~~AIr  137 (138)
                      .+.+++.|++.+++++..-.+.||||.|.. ||+| -.|.|-....-+++-.||..||-
T Consensus       174 ~~~l~~~A~~a~~~sYaPYS~f~vgaal~~~~g~i-~~G~nvENAay~~slcaer~Ai~  231 (283)
T TIGR01355       174 ISHLKQQALKAANRSYAPYSKSPSGVALLDKEGKV-YRGWYIESAAFNPSLGPVQAALV  231 (283)
T ss_pred             HHHHHHHHHHHHHhccCCCcCCceeEEEEeCCCCE-EEEEEeecCCCCCcccHHHHHHH
Confidence            345899999999999987667999999997 6664 58999998889999999999983

This homodimeric zinc metalloprotein is found in Arabidopis and some Proteobacteria. A related, homotetrameric form with a much smaller subunit is found most bacteria and in animals. Both types may act on deoxycytidine as well as cytidine.

>TIGR01355 cyt_deam_dimer cytidine deaminase, homodimeric

Probab=94.28  E-value=0.15  Score=43.41  Aligned_cols=58  Identities=16%  Similarity=-0.100  Sum_probs=44.0

Q ss_pred             hHHHHHHHHHHHHHhcccCCCCCcEEEEEEe-CCeEEEEEecCc--ccCCCCcchHHHHHhc
Q 036428           79 RDHEFLSKAVEEAYKGVECGDGGPFGAVVVR-SDEVVVSCHNMV--LKHTDPTAHAEVTAVR  137 (138)
Q Consensus        79 ~D~~~Mr~AIelA~ka~~~g~~~PVGAVIV~-dGeIIa~G~N~~--~~~~DpTaHAE~~AIr  137 (138)
                      .++.++++|.+.+++|+..-.+.+|||++.. +|+ |-.|.|-.  ...-..+-|||..||-
T Consensus        21 ~~~~L~~~a~~a~~~AyaPYS~F~VGAall~~~G~-iy~GvNvE~~nas~~~tiCAEr~Ai~   81 (283)
T TIGR01355        21 DPKLLPKLIPKAASYARAPISKFNVGAVGRGSSGR-FYLGVNVEFPGLPLHHSIHAEQFLIS   81 (283)
T ss_pred             hHHHHHHHHHHHHhcCcCCccCCeeeEEEEeCCCC-EEEEEEeccCCCCCCccccHHHHHHH
Confidence            4557888888888888876667999999986 677 55789965  2223457899999873

This homodimeric zinc metalloprotein is found in Arabidopis and some Proteobacteria. A related, homotetrameric form with a much smaller subunit is found most bacteria and in animals. Both types may act on deoxycytidine as well as cytidine.

>PRK09027 cytidine deaminase; Provisional

Probab=94.05  E-value=0.18  Score=43.17  Aligned_cols=58  Identities=9%  Similarity=0.048  Sum_probs=49.1

Q ss_pred             hHHHHHHHHHHHHHhcccCCCCCcEEEEEEe-CCeEEEEEecCcccCCCCcchHHHHHhc
Q 036428           79 RDHEFLSKAVEEAYKGVECGDGGPFGAVVVR-SDEVVVSCHNMVLKHTDPTAHAEVTAVR  137 (138)
Q Consensus        79 ~D~~~Mr~AIelA~ka~~~g~~~PVGAVIV~-dGeIIa~G~N~~~~~~DpTaHAE~~AIr  137 (138)
                      .++.+.++|++.+.+++..-.+.|+|+.|.. ||+|. .|.|-....-+|+-.||..||-
T Consensus       188 ~~~~L~~~A~~aa~~SYaPYS~f~vGaAl~~~dG~i~-~G~nvENAAynpslcaer~Al~  246 (295)
T PRK09027        188 TGDPLIQAALDAANRSHAPYSQSYSGVALETKDGRIY-TGRYAENAAFNPSLPPLQGALN  246 (295)
T ss_pred             CHHHHHHHHHHHHHhccCCccCCceeEEEEeCCCCEE-EEEEEEcCCCCCcccHHHHHHH
Confidence            4456889999999999987667999999986 77754 7999888888999999999873

>KOG0833 consensus Cytidine deaminase [Nucleotide transport and metabolism]

Probab=91.26  E-value=0.97  Score=36.31  Aligned_cols=56  Identities=18%  Similarity=-0.010  Sum_probs=37.1

Q ss_pred             HHHHHHHHHHHHhcccCCCCCcEEEEEEe-CCeEEEEEecCcccCCCCcchHHHHHhc
Q 036428           81 HEFLSKAVEEAYKGVECGDGGPFGAVVVR-SDEVVVSCHNMVLKHTDPTAHAEVTAVR  137 (138)
Q Consensus        81 ~~~Mr~AIelA~ka~~~g~~~PVGAVIV~-dGeIIa~G~N~~~~~~DpTaHAE~~AIr  137 (138)
                      ++..+.+.+.-+.|+..-.+.||||++.. +|+ |-.|.|-....-.++-|||..||-
T Consensus        22 ~~L~~l~~~A~~~AyaPyS~fkVGA~~r~ssGr-if~G~NVEn~~~~~sIcAEr~ai~   78 (173)
T KOG0833|consen   22 QELLKLARKAMKLAYAPYSKFKVGAAGRASSGR-IFLGVNVENASYHHSICAERFAIA   78 (173)
T ss_pred             HHHHHHHHHHHHhccCCccCCceEEEEEecCCc-EEEeeeecccCCCCcccHHHHHHH
Confidence            33333333333333433335899999996 666 567999777767789999998874

>PLN02402 cytidine deaminase

Probab=90.26  E-value=1.1  Score=38.65  Aligned_cols=57  Identities=16%  Similarity=-0.026  Sum_probs=37.4

Q ss_pred             HHHHHHHHHHHHHhcccCCCCCcEEEEEEe-CCeEEEEEecCcccCCCC--cchHHHHHhc
Q 036428           80 DHEFLSKAVEEAYKGVECGDGGPFGAVVVR-SDEVVVSCHNMVLKHTDP--TAHAEVTAVR  137 (138)
Q Consensus        80 D~~~Mr~AIelA~ka~~~g~~~PVGAVIV~-dGeIIa~G~N~~~~~~Dp--TaHAE~~AIr  137 (138)
                      ++-.+.++-+..+.++..-.+.+|||++.. +|+ |-.|.|-....-..  +-|||..||-
T Consensus        25 ~~ll~~l~~~A~~~AyaPYS~F~VGAa~l~~~G~-i~~GvNVEnasy~l~~tiCAEr~Ai~   84 (303)
T PLN02402         25 LQLLPSLVKSAQSLARPPISKYHVGAVGLGSSGR-IFLGVNLEFPGLPLHHSVHAEQFLIT   84 (303)
T ss_pred             HHHHHHHHHHHHHhcCCCCCCCeeeEEEEeCCCC-EEEEEeeecCCCCCCCcccHHHHHHH
Confidence            344444444444555544346899999986 676 56789966544333  7899999873

>PLN02182 cytidine deaminase

Probab=88.08  E-value=1.8  Score=38.03  Aligned_cols=46  Identities=22%  Similarity=-0.018  Sum_probs=32.4

Q ss_pred             HHhcccCCCCCcEEEEEEe-CCeEEEEEecCcccCCCC--cchHHHHHhc
Q 036428           91 AYKGVECGDGGPFGAVVVR-SDEVVVSCHNMVLKHTDP--TAHAEVTAVR  137 (138)
Q Consensus        91 A~ka~~~g~~~PVGAVIV~-dGeIIa~G~N~~~~~~Dp--TaHAE~~AIr  137 (138)
                      ++.|+..-.+.+|||++.. +|+ |-.|.|.....-..  +-|||..||-
T Consensus        56 ~~~AyaPyS~F~VGAa~l~~sG~-iy~GvNVEnas~pl~~tICAEr~AI~  104 (339)
T PLN02182         56 MCLARAPISKYKVGAVGRASSGR-VYLGVNVDFPGLPLHHSIHAEQFLVT  104 (339)
T ss_pred             HhcCcCCccCCeeeEEEEeCCCC-EEEEEEeecCCCccCCccCHHHHHHH
Confidence            4444444346899999986 777 56799977554333  8899999873

>PF08211 dCMP_cyt_deam_2: Cytidine and deoxycytidylate deaminase zinc-binding region ; InterPro: IPR013171 This region contains the zinc-binding domain of cytidine and deoxycytidylate deaminase

Probab=87.79  E-value=1.6  Score=33.26  Aligned_cols=55  Identities=13%  Similarity=0.122  Sum_probs=35.2

Q ss_pred             HHHHHHHHHHHhcccCCCCCcEEEEEEe-CCeEEEEEecCcccCCCCcchHHHHHhc
Q 036428           82 EFLSKAVEEAYKGVECGDGGPFGAVVVR-SDEVVVSCHNMVLKHTDPTAHAEVTAVR  137 (138)
Q Consensus        82 ~~Mr~AIelA~ka~~~g~~~PVGAVIV~-dGeIIa~G~N~~~~~~DpTaHAE~~AIr  137 (138)
                      ...++|++.|+++...-...|.|++|.. +|+ |-.|.+-...--+|+-.+.-.||-
T Consensus        35 ~l~~~A~~Aa~~syaPYS~~~sGvAL~~~~G~-i~~G~y~EnAAfNPSl~PlQ~AL~   90 (124)
T PF08211_consen   35 PLVQAALEAANRSYAPYSKCPSGVALLTSDGR-IYTGRYAENAAFNPSLPPLQAALV   90 (124)
T ss_dssp             HHHHHHHHHHCT-B-TTT---EEEEEEETTS--EEEEE-B--TTSTT-B-HHHHHHH
T ss_pred             HHHHHHHHHHHhccCCccCCceeEEEEeCCCC-EEEEEEEeecccCCChHHHHHHHH
Confidence            3788899999999886556899999995 666 456777777778899999888863

Cytidine deaminase (3.5.4.5 from EC) (cytidine aminohydrolase) catalyzes the hydrolysis of cytidine into uridine and ammonia while deoxycytidylate deaminase (3.5.4.12 from EC) (dCMP deaminase) hydrolyzes dCMP into dUMP. Both enzymes are known to bind zinc and to require it for their catalytic activity [, ]. These two enzymes do not share any sequence similarity with the exception of a region that contains three conserved histidine and cysteine residues which are thought to be involved in the binding of the catalytic zinc ion.; GO: 0004126 cytidine deaminase activity, 0008270 zinc ion binding; PDB: 1CTU_A 1AF2_A 1ALN_A 1CTT_A 4EG2_C.

>KOG2771 consensus Subunit of tRNA-specific adenosine-34 deaminase [RNA processing and modification]

Probab=85.00  E-value=1.4  Score=38.75  Aligned_cols=56  Identities=20%  Similarity=0.224  Sum_probs=44.7

Q ss_pred             hhHHHHHHHHHHHHHhcccCCCCCcEEEEEEe--CCeEEEEEecCcccCCCCcchHHHHHhc
Q 036428           78 DRDHEFLSKAVEEAYKGVECGDGGPFGAVVVR--SDEVVVSCHNMVLKHTDPTAHAEVTAVR  137 (138)
Q Consensus        78 ~~D~~~Mr~AIelA~ka~~~g~~~PVGAVIV~--dGeIIa~G~N~~~~~~DpTaHAE~~AIr  137 (138)
                      .....+|+.+|++|..+...   .|+|++|++  -..|++.|..++... +|..|.=|++++
T Consensus       165 ~~~~ri~e~~I~~a~~~~~~---~~~~a~I~~p~~~~Via~~~~~~~~~-~P~eh~~mv~v~  222 (344)
T KOG2771|consen  165 GEIARIGELLIAMATDGHAS---RPVSAAIVDPVMDRVIAAGTGEVCAY-NPIEHCVMVLVH  222 (344)
T ss_pred             HHHHHHHHHHHHHHhhhccc---cCccceecCCccceEEecCCCccccc-CcHHHHHHHHHH
Confidence            34567899999999988764   889999997  567888887777654 799999998874

>PRK09027 cytidine deaminase; Provisional

Probab=84.77  E-value=4.2  Score=34.95  Aligned_cols=57  Identities=23%  Similarity=0.116  Sum_probs=35.6

Q ss_pred             HHHHHHHHHHHH-HhcccCCCCCcEEEEEEe-CCeEEEEEecCccc--CCCCcchHHHHHhc
Q 036428           80 DHEFLSKAVEEA-YKGVECGDGGPFGAVVVR-SDEVVVSCHNMVLK--HTDPTAHAEVTAVR  137 (138)
Q Consensus        80 D~~~Mr~AIelA-~ka~~~g~~~PVGAVIV~-dGeIIa~G~N~~~~--~~DpTaHAE~~AIr  137 (138)
                      +.+.+-..+..| ..|+..-.+.+|||++.. +|+ +-.|.|....  .-..+-|||..||-
T Consensus        49 ~~~l~~~ll~~a~~~AyaPyS~F~VGAa~~~~sG~-iy~GvNvE~~~~s~~~tiCAEr~Ai~  109 (295)
T PRK09027         49 DDALALALLPLAAACAVTPISHFNVGAIARGVSGN-FYFGANMEFAGAALQQTVHAEQSAIS  109 (295)
T ss_pred             HHHHHHHHHHHHHHhccCCCCCCcEEEEEEeCCCC-EEEEEeeccCCCCCCCCcCHHHHHHH
Confidence            334443333333 334443346999999986 677 4589996643  22458899999873

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	138
1wkq_A	164	Crystal Structure Of Bacillus Subtilis Guanine Deam		2e-07
1tiy_A	164	X-Ray Structure Of Guanine Deaminase From Bacillus		2e-07

>pdb|1WKQ|A Chain A, Crystal Structure Of Bacillus Subtilis Guanine Deaminase. The First Domain-Swapped Structure In The Cytidine Deaminase Superfamily Length = 164

Iteration: 1
 Score = 51.2 bits (121), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 29/60 (48%), Positives = 34/60 (56%), Gaps = 1/60 (1%)
Query: 80  DHE-FLSKAVEEAYKGVECGDGGPFGAXXXXXXXXXXSCHNMVLKHTDPTAHAEVTAVRE 138
           +HE FL +AV  A +GV  G GGPFGA             N V    DPTAHAEVTA+R+
Sbjct: 10  NHETFLKRAVTLACEGVNAGIGGPFGAVIVKDGAIIAEGQNNVTTSNDPTAHAEVTAIRK 69

>pdb|1TIY|A Chain A, X-Ray Structure Of Guanine Deaminase From Bacillus Subtilis Northeast Structural Genomics Consortium Target Sr160 Length = 164

Iteration: 1
 Score = 51.2 bits (121), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 29/60 (48%), Positives = 34/60 (56%), Gaps = 1/60 (1%)
Query: 80  DHE-FLSKAVEEAYKGVECGDGGPFGAXXXXXXXXXXSCHNMVLKHTDPTAHAEVTAVRE 138
           +HE FL +AV  A +GV  G GGPFGA             N V    DPTAHAEVTA+R+
Sbjct: 2   NHETFLKRAVTLACEGVNAGIGGPFGAVIVKDGAIIAEGQNNVTTSNDPTAHAEVTAIRK 61

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	138
1wkq_A	164	Guanine deaminase; domain SWAP, the cytidine deami	1e-25
2g84_A	197	Cytidine and deoxycytidylate deaminase zinc-bindi;	1e-17
2nx8_A	179	TRNA-specific adenosine deaminase; TAD, hydrolase;	3e-13
2b3j_A	159	TRNA adenosine deaminase; mixed alpha-beta, protei	4e-13
1z3a_A	168	TRNA-specific adenosine deaminase; tRNA adenosine	5e-13
1wwr_A	171	TRNA adenosine deaminase TADA; homodimer, riken st	7e-13
2a8n_A	144	Cytidine and deoxycytidylate deaminase; RNA editin	2e-12
1p6o_A	161	Cytosine deaminase; hydrolase, dimer, inhibitor bo	3e-12
3dh1_A	189	TRNA-specific adenosine deaminase 2; zinc-binding	6e-12

>1wkq_A Guanine deaminase; domain SWAP, the cytidine deaminase superfamily, substrate specificity, structural plasticity, hydrolase; 1.17A {Bacillus subtilis} SCOP: c.97.1.2 PDB: 1tiy_A Length = 164

 Score = 94.0 bits (234), Expect = 1e-25
 Identities = 32/68 (47%), Positives = 41/68 (60%), Gaps = 1/68 (1%)

Query: 72  HQEAVQDRDHE-FLSKAVEEAYKGVECGDGGPFGAVVVRSDEVVVSCHNMVLKHTDPTAH 130
           H       +HE FL +AV  A +GV  G GGPFGAV+V+   ++    N V    DPTAH
Sbjct: 2   HHHHHHAMNHETFLKRAVTLACEGVNAGIGGPFGAVIVKDGAIIAEGQNNVTTSNDPTAH 61

Query: 131 AEVTAVRE 138
           AEVTA+R+
Sbjct: 62  AEVTAIRK 69

>2g84_A Cytidine and deoxycytidylate deaminase zinc-bindi; zinc-binding region, structural genomics, PSI, protein structure initiative; 1.40A {Nitrosomonas europaea} SCOP: c.97.1.2 Length = 197

 Score = 74.1 bits (182), Expect = 1e-17
 Identities = 17/71 (23%), Positives = 28/71 (39%), Gaps = 3/71 (4%)

Query: 70  AAHQEAVQDRDHEFLSKAVEEAYKGVECGDGGPFGAVVVRSD--EVVVSCHNMVLKHTDP 127
           A ++  V       +   +E     +    GGPF A V   D   ++ +  N V+     
Sbjct: 18  ANNEPRVLAAPEARMGYVLELVRANIAAD-GGPFAAAVFERDSGLLIAAGTNRVVPGRCS 76

Query: 128 TAHAEVTAVRE 138
            AHAE+ A+  
Sbjct: 77  AAHAEILALSL 87

>2nx8_A TRNA-specific adenosine deaminase; TAD, hydrolase; 2.00A {Streptococcus pyogenes serotype M6} Length = 179

 Score = 62.2 bits (152), Expect = 3e-13
 Identities = 16/62 (25%), Positives = 32/62 (51%), Gaps = 1/62 (1%)

Query: 77  QDRDHEFLSKAVEEAYKGVECGDGGPFGAVVVRSDEVVVSCHNMVLKHTDPTAHAEVTAV 136
            +    F+ +A++E+ K ++  +  P G V+V+  E++   HN   +      HAE+ A+
Sbjct: 13  LEEQTYFMQEALKESEKSLQKAEI-PIGCVIVKDGEIIGRGHNAREESNQAIMHAEMMAI 71

Query: 137 RE 138
            E
Sbjct: 72  NE 73

>2b3j_A TRNA adenosine deaminase; mixed alpha-beta, protein-RNA complex, RNA stem-loop, hydrol complex; HET: P5P; 2.00A {Staphylococcus aureus subsp} SCOP: c.97.1.2 Length = 159

 Score = 61.7 bits (151), Expect = 4e-13
 Identities = 23/62 (37%), Positives = 34/62 (54%), Gaps = 1/62 (1%)

Query: 77  QDRDHEFLSKAVEEAYKGVECGDGGPFGAVVVRSDEVVVSCHNMVLKHTDPTAHAEVTAV 136
              D  F++ A+EEA K  + G+  P GA++ + DEV+   HN+      PTAHAE  A+
Sbjct: 4   MTNDIYFMTLAIEEAKKAAQLGEV-PIGAIITKDDEVIARAHNLRETLQQPTAHAEHIAI 62

Query: 137 RE 138
             
Sbjct: 63  ER 64

>1z3a_A TRNA-specific adenosine deaminase; tRNA adenosine deaminase, dimer, zinc, metalloenzyme, structural genomics, PSI, protein structure initiative; 2.03A {Escherichia coli} SCOP: c.97.1.2 PDB: 3ocq_A Length = 168

 Score = 61.4 bits (150), Expect = 5e-13
 Identities = 19/65 (29%), Positives = 34/65 (52%), Gaps = 1/65 (1%)

Query: 74  EAVQDRDHEFLSKAVEEAYKGVECGDGGPFGAVVVRSDEVVVSCHNMVLKHTDPTAHAEV 133
             V+     ++  A+  A +  +  +  P GAV+V ++ V+    N  +   DPTAHAE+
Sbjct: 3   SEVEFSHEYWMRHALTLAKRAWDEREV-PVGAVLVHNNRVIGEGWNRPIGRHDPTAHAEI 61

Query: 134 TAVRE 138
            A+R+
Sbjct: 62  MALRQ 66

>1wwr_A TRNA adenosine deaminase TADA; homodimer, riken structural genomics/proteomics initiative, RSGI, structural genomics, hydrolase; 1.80A {Aquifex aeolicus} SCOP: c.97.1.2 Length = 171

 Score = 61.0 bits (149), Expect = 7e-13
 Identities = 24/65 (36%), Positives = 36/65 (55%), Gaps = 1/65 (1%)

Query: 74  EAVQDRDHEFLSKAVEEAYKGVECGDGGPFGAVVVRSDEVVVSCHNMVLKHTDPTAHAEV 133
                    FL  A+ EA +  E G+  P GA++V+  E++   HN V +  DPTAHAE+
Sbjct: 17  RGSHMGKEYFLKVALREAKRAFEKGEV-PVGAIIVKEGEIISKAHNSVEELKDPTAHAEM 75

Query: 134 TAVRE 138
            A++E
Sbjct: 76  LAIKE 80

>2a8n_A Cytidine and deoxycytidylate deaminase; RNA editing, RNA binding protein; 1.60A {Agrobacterium tumefaciens} SCOP: c.97.1.2 Length = 144

 Score = 59.8 bits (146), Expect = 2e-12
 Identities = 19/60 (31%), Positives = 27/60 (45%), Gaps = 1/60 (1%)

Query: 79  RDHEFLSKAVEEAYKGVECGDGGPFGAVVVRSDEVVVSCHNMVLKHTDPTAHAEVTAVRE 138
               F+  A+ EA    E  +  P GAV+V    V+    N   +  D TAHAE+  +R 
Sbjct: 3   ERTHFMELALVEARSAGERDEV-PIGAVLVLDGRVIARSGNRTRELNDVTAHAEIAVIRM 61

>1p6o_A Cytosine deaminase; hydrolase, dimer, inhibitor bound; 1.14A {Saccharomyces cerevisiae} SCOP: c.97.1.2 PDB: 1ox7_A 1rb7_A 1ysd_A 1ysb_A 2o3k_A 1uaq_A Length = 161

 Score = 59.2 bits (144), Expect = 3e-12
 Identities = 17/64 (26%), Positives = 28/64 (43%), Gaps = 3/64 (4%)

Query: 77  QDRDHEFLSKAVEEAYKGVECGDGGPFGAVVVRSD--EVVVSCHNMVLKHTDPTAHAEVT 134
              D + +  A EEA  G + G G P G  ++ +    V+   HNM  +    T H E++
Sbjct: 11  SKWDQKGMDIAYEEAALGYKEG-GVPIGGCLINNKDGSVLGRGHNMRFQKGSATLHGEIS 69

Query: 135 AVRE 138
            +  
Sbjct: 70  TLEN 73

>3dh1_A TRNA-specific adenosine deaminase 2; zinc-binding protein, TRA tRNA processing, hydrolase, structural genomics, structural consortium, SGC; 2.80A {Homo sapiens} Length = 189

 Score = 59.2 bits (144), Expect = 6e-12
 Identities = 16/62 (25%), Positives = 34/62 (54%), Gaps = 1/62 (1%)

Query: 77  QDRDHEFLSKAVEEAYKGVECGDGGPFGAVVVRSDEVVVSCHNMVLKHTDPTAHAEVTAV 136
            +   +++ +A+  A + +E  +  P G ++V ++EVV    N V +  + T HAE+ A+
Sbjct: 23  MEETEKWMEEAMHMAKEALENTEV-PVGCLMVYNNEVVGKGRNEVNQTKNATRHAEMVAI 81

Query: 137 RE 138
            +
Sbjct: 82  DQ 83

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	138
3dh1_A	189	TRNA-specific adenosine deaminase 2; zinc-binding	99.67
1wkq_A	164	Guanine deaminase; domain SWAP, the cytidine deami	99.66
2nx8_A	179	TRNA-specific adenosine deaminase; TAD, hydrolase;	99.65
2a8n_A	144	Cytidine and deoxycytidylate deaminase; RNA editin	99.64
1z3a_A	168	TRNA-specific adenosine deaminase; tRNA adenosine	99.63
2b3j_A	159	TRNA adenosine deaminase; mixed alpha-beta, protei	99.62
2g84_A	197	Cytidine and deoxycytidylate deaminase zinc-bindi;	99.62
1p6o_A	161	Cytosine deaminase; hydrolase, dimer, inhibitor bo	99.61
1wwr_A	171	TRNA adenosine deaminase TADA; homodimer, riken st	99.6
2w4l_A	178	DCMP deaminse, deoxycytidylate deaminase; pyrimidi	99.53
2hvw_A	184	Deoxycytidylate deaminase; 3-layer (alpha-beta)-sa	99.51
1vq2_A	193	DCMP deaminase, deoxycytidylate deaminase; hydrola	99.43
2g6v_A	402	Riboflavin biosynthesis protein RIBD; RIBD APO str	99.39
2b3z_A	373	Riboflavin biosynthesis protein RIBD; alpha/beta/a	99.39
2hxv_A	360	Diaminohydroxyphosphoribosylaminopyrimidine deami	99.37
1uwz_A	136	Cytidine deaminase; CDD, tetramer, zinc binding, p	98.91
2fr5_A	146	Cytidine deaminase; tetrahydrouridine, protein-inh	98.78
2z3g_A	130	Blasticidin-S deaminase; hydrolase, cytidine deami	98.67
3g8q_A	278	Predicted RNA-binding protein, contains thump doma	98.39
3b8f_A	142	Putative blasticidin S deaminase; cytidine deamina	98.28
1r5t_A	142	Cytidine deaminase; zinc dependent deaminase, RNA	98.15
3r2n_A	138	Cytidine deaminase; structural genomics, seattle s	98.07
2d30_A	141	Cytidine deaminase; purines, pyrimidines, nucleosi	98.03
3mpz_A	150	Cytidine deaminase; ssgcid, structu genomics, seat	97.71
1ctt_A	294	Cytidine deaminase; hydrolase; HET: DHZ; 2.20A {Es	97.28
3oj6_A	158	Blasticidin-S deaminase; ssgcid, seattle structura	96.83
1ctt_A	294	Cytidine deaminase; hydrolase; HET: DHZ; 2.20A {Es	96.79
3dmo_A	138	Cytidine deaminase; structural genomics, seattle s	96.31
2nyt_A	190	Probable C->U-editing enzyme apobec-2; cytidine de	96.25
4eg2_A	298	Cytidine deaminase; UMP synthesis, Zn binding, hyd	94.22
4eg2_A	298	Cytidine deaminase; UMP synthesis, Zn binding, hyd	88.93

>3dh1_A TRNA-specific adenosine deaminase 2; zinc-binding protein, TRA tRNA processing, hydrolase, structural genomics, structural consortium, SGC; 2.80A {Homo sapiens}

Probab=99.67  E-value=3.2e-17  Score=128.84  Aligned_cols=61  Identities=26%  Similarity=0.411  Sum_probs=56.3

Q ss_pred             chhHHHHHHHHHHHHHhcccCCCCCcEEEEEEeCCeEEEEEecCcccCCCCcchHHHHHhcC
Q 036428           77 QDRDHEFLSKAVEEAYKGVECGDGGPFGAVVVRSDEVVVSCHNMVLKHTDPTAHAEVTAVRE  138 (138)
Q Consensus        77 ~~~D~~~Mr~AIelA~ka~~~g~~~PVGAVIV~dGeIIa~G~N~~~~~~DpTaHAE~~AIr~  138 (138)
                      ..+|++||++|+++|+++...++ +|||||||+||+||++|+|++.+.+||+.|||++||++
T Consensus        23 ~~~d~~~M~~Al~lA~~a~~~~~-~pVGAVIV~~g~IIa~G~N~~~~~~~~t~HAEi~AI~~   83 (189)
T 3dh1_A           23 MEETEKWMEEAMHMAKEALENTE-VPVGCLMVYNNEVVGKGRNEVNQTKNATRHAEMVAIDQ   83 (189)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHTTS-CCCEEEEEETTEEEEEEECCHHHHTCTTCCHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHhhhCCC-CCEEEEEEECCEEEEEEeCCCCccCCCcCcHHHHHHHH
Confidence            45689999999999999988775 99999999999999999999888899999999999973

>1wkq_A Guanine deaminase; domain SWAP, the cytidine deaminase superfamily, substrate specificity, structural plasticity, hydrolase; 1.17A {Bacillus subtilis} SCOP: c.97.1.2 PDB: 1tiy_A

Probab=99.66  E-value=4.4e-17  Score=125.47  Aligned_cols=61  Identities=48%  Similarity=0.756  Sum_probs=56.4

Q ss_pred             hhHHHHHHHHHHHHHhcccCCCCCcEEEEEEeCCeEEEEEecCcccCCCCcchHHHHHhcC
Q 036428           78 DRDHEFLSKAVEEAYKGVECGDGGPFGAVVVRSDEVVVSCHNMVLKHTDPTAHAEVTAVRE  138 (138)
Q Consensus        78 ~~D~~~Mr~AIelA~ka~~~g~~~PVGAVIV~dGeIIa~G~N~~~~~~DpTaHAE~~AIr~  138 (138)
                      ..|+.||++|+++|+++...+++.|||||||+||+||++|+|+.....||+.|||++||++
T Consensus         9 ~~~~~~M~~Al~~A~~a~~~g~~~pVGAVIV~~g~Ii~~G~N~~~~~~d~~~HAE~~AI~~   69 (164)
T 1wkq_A            9 MNHETFLKRAVTLACEGVNAGIGGPFGAVIVKDGAIIAEGQNNVTTSNDPTAHAEVTAIRK   69 (164)
T ss_dssp             CCHHHHHHHHHHHHHHHHHTTSSSSCEEEEEETTEEEEEEECCHHHHTCTTCCHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHHHhcCCCCCEEEEEEECCEEEEEEecCCcCCCCcccCHHHHHHHH
Confidence            4588999999999999998884599999999999999999999988899999999999973

>2nx8_A TRNA-specific adenosine deaminase; TAD, hydrolase; 2.00A {Streptococcus pyogenes serotype M6}

Probab=99.65  E-value=7.9e-17  Score=125.44  Aligned_cols=61  Identities=26%  Similarity=0.451  Sum_probs=56.3

Q ss_pred             chhHHHHHHHHHHHHHhcccCCCCCcEEEEEEeCCeEEEEEecCcccCCCCcchHHHHHhcC
Q 036428           77 QDRDHEFLSKAVEEAYKGVECGDGGPFGAVVVRSDEVVVSCHNMVLKHTDPTAHAEVTAVRE  138 (138)
Q Consensus        77 ~~~D~~~Mr~AIelA~ka~~~g~~~PVGAVIV~dGeIIa~G~N~~~~~~DpTaHAE~~AIr~  138 (138)
                      +++|++||++|+++|+++...++ +|||||||+||+||++|+|+....+||+.|||++||++
T Consensus        13 ~~~d~~~M~~Al~~A~~a~~~g~-~pVGAVIV~~g~Ii~~G~N~~~~~~d~t~HAE~~AI~~   73 (179)
T 2nx8_A           13 LEEQTYFMQEALKESEKSLQKAE-IPIGCVIVKDGEIIGRGHNAREESNQAIMHAEMMAINE   73 (179)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHTTS-CCCEEEEEETTEEEEEEECCHHHHTCTTCCHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHHHhccccCC-CCEEEEEEECCEEEEEEECCCCCcCCCccCHHHHHHHH
Confidence            35789999999999999998764 99999999999999999999998899999999999973

>2a8n_A Cytidine and deoxycytidylate deaminase; RNA editing, RNA binding protein; 1.60A {Agrobacterium tumefaciens} SCOP: c.97.1.2

Probab=99.64  E-value=8.7e-17  Score=120.21  Aligned_cols=60  Identities=32%  Similarity=0.380  Sum_probs=55.3

Q ss_pred             hhHHHHHHHHHHHHHhcccCCCCCcEEEEEEeCCeEEEEEecCcccCCCCcchHHHHHhcC
Q 036428           78 DRDHEFLSKAVEEAYKGVECGDGGPFGAVVVRSDEVVVSCHNMVLKHTDPTAHAEVTAVRE  138 (138)
Q Consensus        78 ~~D~~~Mr~AIelA~ka~~~g~~~PVGAVIV~dGeIIa~G~N~~~~~~DpTaHAE~~AIr~  138 (138)
                      .+|++||++|+++|+++...+ +.|||||||+||+||++|+|+.....||+.|||++||++
T Consensus         2 ~~d~~~m~~A~~~A~~a~~~~-~~~VGAviv~~g~Ii~~G~N~~~~~~~~~~HAE~~Ai~~   61 (144)
T 2a8n_A            2 AERTHFMELALVEARSAGERD-EVPIGAVLVLDGRVIARSGNRTRELNDVTAHAEIAVIRM   61 (144)
T ss_dssp             CCHHHHHHHHHHHHHHHHHTT-SCCCEEEEEETTEEEEEEECCHHHHTCTTCCHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHHHhhcCC-CCCEEEEEEECCEEEEEEECCCCCCCCCcCCHHHHHHHH
Confidence            358899999999999999876 499999999999999999999988899999999999973

>1z3a_A TRNA-specific adenosine deaminase; tRNA adenosine deaminase, dimer, zinc, metalloenzyme, structural genomics, PSI, protein structure initiative; 2.03A {Escherichia coli} SCOP: c.97.1.2 PDB: 3ocq_A

Probab=99.63  E-value=1.8e-16  Score=122.05  Aligned_cols=60  Identities=30%  Similarity=0.418  Sum_probs=55.3

Q ss_pred             hhHHHHHHHHHHHHHhcccCCCCCcEEEEEEeCCeEEEEEecCcccCCCCcchHHHHHhcC
Q 036428           78 DRDHEFLSKAVEEAYKGVECGDGGPFGAVVVRSDEVVVSCHNMVLKHTDPTAHAEVTAVRE  138 (138)
Q Consensus        78 ~~D~~~Mr~AIelA~ka~~~g~~~PVGAVIV~dGeIIa~G~N~~~~~~DpTaHAE~~AIr~  138 (138)
                      .+|++||++|+++|+++...++ .|||||||+||+||++|+|+.....||+.|||++||++
T Consensus         7 ~~d~~~M~~A~~~A~~a~~~~~-~pVGAviV~~g~Ii~~G~N~~~~~~d~t~HAE~~Ai~~   66 (168)
T 1z3a_A            7 FSHEYWMRHALTLAKRAWDERE-VPVGAVLVHNNRVIGEGWNRPIGRHDPTAHAEIMALRQ   66 (168)
T ss_dssp             TSHHHHHHHHHHHHHHHHHTTS-CCCEEEEEETTEEEEEEECCHHHHTCTTCCHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHhhhcCC-CcEEEEEEECCEEEEEEEcccccCCCcchhHHHHHHHH
Confidence            4588999999999999988764 99999999999999999999988899999999999973

>2b3j_A TRNA adenosine deaminase; mixed alpha-beta, protein-RNA complex, RNA stem-loop, hydrol complex; HET: P5P; 2.00A {Staphylococcus aureus subsp} SCOP: c.97.1.2

Probab=99.62  E-value=2.5e-16  Score=119.93  Aligned_cols=60  Identities=38%  Similarity=0.590  Sum_probs=55.4

Q ss_pred             hhHHHHHHHHHHHHHhcccCCCCCcEEEEEEeCCeEEEEEecCcccCCCCcchHHHHHhcC
Q 036428           78 DRDHEFLSKAVEEAYKGVECGDGGPFGAVVVRSDEVVVSCHNMVLKHTDPTAHAEVTAVRE  138 (138)
Q Consensus        78 ~~D~~~Mr~AIelA~ka~~~g~~~PVGAVIV~dGeIIa~G~N~~~~~~DpTaHAE~~AIr~  138 (138)
                      ++|++||++|+++|+++...+ +.|||||||+||+||++|+|......||+.|||++||++
T Consensus         5 ~~d~~~m~~A~~~A~~a~~~~-~~pVGAviv~~g~Ii~~G~N~~~~~~~~~~HAE~~Ai~~   64 (159)
T 2b3j_A            5 TNDIYFMTLAIEEAKKAAQLG-EVPIGAIITKDDEVIARAHNLRETLQQPTAHAEHIAIER   64 (159)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTT-SCCCEEEEEETTEEEEEEECCHHHHTCTTCCHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHhhcCC-CCCEEEEEEECCEEEEEEECCCCCCCCCccCHHHHHHHH
Confidence            468999999999999998876 499999999999999999999988899999999999973

>2g84_A Cytidine and deoxycytidylate deaminase zinc-bindi; zinc-binding region, structural genomics, PSI, protein structure initiative; 1.40A {Nitrosomonas europaea} SCOP: c.97.1.2

Probab=99.62  E-value=4.5e-16  Score=122.49  Aligned_cols=62  Identities=23%  Similarity=0.288  Sum_probs=55.7

Q ss_pred             CchhHHHHHHHHHHHHHhcccCCCCCcEEEEEEe-C-CeEEEEEecCcccCCCCcchHHHHHhcC
Q 036428           76 VQDRDHEFLSKAVEEAYKGVECGDGGPFGAVVVR-S-DEVVVSCHNMVLKHTDPTAHAEVTAVRE  138 (138)
Q Consensus        76 ~~~~D~~~Mr~AIelA~ka~~~g~~~PVGAVIV~-d-GeIIa~G~N~~~~~~DpTaHAE~~AIr~  138 (138)
                      ....|++||++|+++|+++...++ .|||||||+ | |+||++|+|++...+||+.|||++||++
T Consensus        24 ~~~~d~~~M~~Al~~A~~a~~~~~-~PvGAVIV~~~~g~Iia~G~N~~~~~~~~~~HAE~~Ai~~   87 (197)
T 2g84_A           24 VLAAPEARMGYVLELVRANIAADG-GPFAAAVFERDSGLLIAAGTNRVVPGRCSAAHAEILALSL   87 (197)
T ss_dssp             BCCSHHHHHHHHHHHHHHHHHTTC-CSCEEEEEETTTCBEEEEEECCTTTTTCTTCCHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHHhhhhcCC-CCEEEEEEEcCCCEEEEEEECCCCccCCCccCHHHHHHHH
Confidence            455799999999999999995445 999999997 8 9999999999988999999999999973

>1p6o_A Cytosine deaminase; hydrolase, dimer, inhibitor bound; 1.14A {Saccharomyces cerevisiae} SCOP: c.97.1.2 PDB: 1ox7_A 1rb7_A 1ysd_A 1ysb_A 2o3k_A 1uaq_A

Probab=99.61  E-value=3.2e-16  Score=119.80  Aligned_cols=61  Identities=28%  Similarity=0.448  Sum_probs=55.6

Q ss_pred             chhHHHHHHHHHHHHHhcccCCCCCcEEEEEE--eCCeEEEEEecCcccCCCCcchHHHHHhcC
Q 036428           77 QDRDHEFLSKAVEEAYKGVECGDGGPFGAVVV--RSDEVVVSCHNMVLKHTDPTAHAEVTAVRE  138 (138)
Q Consensus        77 ~~~D~~~Mr~AIelA~ka~~~g~~~PVGAVIV--~dGeIIa~G~N~~~~~~DpTaHAE~~AIr~  138 (138)
                      +++|++||++|+++|+++...+ +.|||||||  +||+||++|+|.....+||+.|||++||++
T Consensus        11 ~~~d~~~M~~A~~~A~~a~~~~-~~pVGAviVd~~~g~Ii~~G~N~~~~~~~~t~HAE~~Ai~~   73 (161)
T 1p6o_A           11 SKWDQKGMDIAYEEAALGYKEG-GVPIGGCLINNKDGSVLGRGHNMRFQKGSATLHGEISTLEN   73 (161)
T ss_dssp             CTTHHHHHHHHHHHHHHHHHTT-SCCCEEEEEETTTCCEEEEEECCHHHHTCSSCCHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHhhhccC-CCCEEEEEEEecCCEEEEEEECCCCCCCCcccCHHHHHHHH
Confidence            4568999999999999999876 499999999  799999999999988899999999999973

>1wwr_A TRNA adenosine deaminase TADA; homodimer, riken structural genomics/proteomics initiative, RSGI, structural genomics, hydrolase; 1.80A {Aquifex aeolicus} SCOP: c.97.1.2

Probab=99.60  E-value=5.8e-16  Score=119.91  Aligned_cols=59  Identities=41%  Similarity=0.623  Sum_probs=54.8

Q ss_pred             hHHHHHHHHHHHHHhcccCCCCCcEEEEEEeCCeEEEEEecCcccCCCCcchHHHHHhcC
Q 036428           79 RDHEFLSKAVEEAYKGVECGDGGPFGAVVVRSDEVVVSCHNMVLKHTDPTAHAEVTAVRE  138 (138)
Q Consensus        79 ~D~~~Mr~AIelA~ka~~~g~~~PVGAVIV~dGeIIa~G~N~~~~~~DpTaHAE~~AIr~  138 (138)
                      +|++||++|+++|+++...+ +.|||||||+||+||++|+|+.....||+.|||++||++
T Consensus        22 ~~~~~M~~A~~~A~~a~~~~-~~pVGAvIV~dg~Ii~~G~N~~~~~~d~t~HAE~~AI~~   80 (171)
T 1wwr_A           22 GKEYFLKVALREAKRAFEKG-EVPVGAIIVKEGEIISKAHNSVEELKDPTAHAEMLAIKE   80 (171)
T ss_dssp             SHHHHHHHHHHHHHHHHHTT-SCCCEEEEEETTEEEEEEECCHHHHTCTTCCHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHhcccCC-CCCEEEEEEECCEEEEEEECCCCccCCcccCHHHHHHHH
Confidence            47899999999999999876 499999999999999999999998899999999999973

>2w4l_A DCMP deaminse, deoxycytidylate deaminase; pyrimidine metabolism, nucleotide biosynthesis, zinc, hexamer, hydrolase, metal-binding, phosphoprotein; 2.10A {Homo sapiens}

Probab=99.53  E-value=1.3e-14  Score=112.78  Aligned_cols=66  Identities=18%  Similarity=0.240  Sum_probs=55.4

Q ss_pred             cccccCchhHHHHHHHHHHHHHhcccCCCCCcEEEEEE-eCCeEEEEEecCcccC------------CCC-------cch
Q 036428           71 AHQEAVQDRDHEFLSKAVEEAYKGVECGDGGPFGAVVV-RSDEVVVSCHNMVLKH------------TDP-------TAH  130 (138)
Q Consensus        71 ~~~~~~~~~D~~~Mr~AIelA~ka~~~g~~~PVGAVIV-~dGeIIa~G~N~~~~~------------~Dp-------TaH  130 (138)
                      ..+....++|++||++|+++|+++...  +.||||||| +||+||++|||.....            +||       +.|
T Consensus         4 ~~~~~~~~~d~~~M~~A~~~A~~s~~p--~~~VGAvIV~~dg~Iia~G~N~~~~~~~d~~~~~~~~~g~p~~~~~~~t~H   81 (178)
T 2w4l_A            4 KKRDDYLEWPEYFMAVAFLSAQRSKDP--NSQVGACIVNSENKIVGIGYNGMPNGCSDDVLPWRRTAENKLDTKYPYVCH   81 (178)
T ss_dssp             CCCSSCCCHHHHHHHHHHHHHTTCCCS--SCCCEEEEECTTSCEEEEEESBCCTTCCTTTSCCCSCCSSGGGSSTTTCBC
T ss_pred             cccccccHHHHHHHHHHHHHHHhcCCC--CCCEEEEEEecCCEEEEEEECCCCcCccccccccccccCCccccccCCcCC
Confidence            345566788999999999999999864  599999999 6999999999987542            454       799


Q ss_pred             HHHHHhcC
Q 036428          131 AEVTAVRE  138 (138)
Q Consensus       131 AE~~AIr~  138 (138)
                      ||++||++
T Consensus        82 AE~~AI~~   89 (178)
T 2w4l_A           82 AELNAIMN   89 (178)
T ss_dssp             HHHHHHHC
T ss_pred             HHHHHHHH
Confidence            99999974

>2hvw_A Deoxycytidylate deaminase; 3-layer (alpha-beta)-sandwich, protein-liand complex, hydrolase; HET: DCP DDN; 1.67A {Streptococcus mutans} PDB: 2hvv_A*

Probab=99.51  E-value=1.8e-14  Score=112.80  Aligned_cols=60  Identities=20%  Similarity=0.223  Sum_probs=52.2

Q ss_pred             chhHHHHHHHHHHHHHhcccCCCCCcEEEEEEeCCeEEEEEecCcccC---------------CCCcchHHHHHhcC
Q 036428           77 QDRDHEFLSKAVEEAYKGVECGDGGPFGAVVVRSDEVVVSCHNMVLKH---------------TDPTAHAEVTAVRE  138 (138)
Q Consensus        77 ~~~D~~~Mr~AIelA~ka~~~g~~~PVGAVIV~dGeIIa~G~N~~~~~---------------~DpTaHAE~~AIr~  138 (138)
                      +++|++||++|+++|+++.. + +.|||||||+||+||++|||.....               .|++.|||++||++
T Consensus        39 ~~~de~~M~~A~~~A~~s~~-~-~~~VGAVIV~dg~Iia~G~N~~~~~~~~c~d~g~~~~~~~~~~t~HAE~~AI~~  113 (184)
T 2hvw_A           39 LSWQDYFMANAELISKRSTC-N-RAYVGAVLVKNNRIIATGYNGGVADTDNCDDVGHEMEDGHCIRTVHAEMNALIQ  113 (184)
T ss_dssp             CCHHHHHHHHHHHHGGGCCC-T-TCCCEEEEEETTEEEEEEECEESTTSCCHHHHCCCEETTEECSEECHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHHHhcCC-C-CCCEEEEEEECCEEEEEEECCCcccccccccccccccccccCCccCHHHHHHHH
Confidence            46899999999999999974 4 5999999999999999999987643               27899999999963

>1vq2_A DCMP deaminase, deoxycytidylate deaminase; hydrolase; HET: DDN; 2.20A {Enterobacteria phage T4} SCOP: c.97.1.2

Probab=99.43  E-value=8.5e-14  Score=108.34  Aligned_cols=43  Identities=14%  Similarity=0.064  Sum_probs=38.9

Q ss_pred             hHHHHHHHHHHHHHhcccCCCCCcEEEEEEeCCeEEEEEecCccc
Q 036428           79 RDHEFLSKAVEEAYKGVECGDGGPFGAVVVRSDEVVVSCHNMVLK  123 (138)
Q Consensus        79 ~D~~~Mr~AIelA~ka~~~g~~~PVGAVIV~dGeIIa~G~N~~~~  123 (138)
                      +|++||++|+++|+++.. . +.|||||||+||+||++|||....
T Consensus         2 ~d~~fM~~A~~~A~rs~~-~-~~~VGAVIV~dg~Iia~G~N~~~~   44 (193)
T 1vq2_A            2 KASTVLQIAYLVSQESKC-C-SWKVGAVIEKNGRIISTGYNGSPA   44 (193)
T ss_dssp             CHHHHHHHHHHHHTTCCC-S-SBCCEEEEEETTEEEEEEECBCCT
T ss_pred             CHHHHHHHHHHHHHhcCC-C-CCCEEEEEEECCEEEEEEeCCCCC
Confidence            478999999999999975 3 499999999999999999999875

>2g6v_A Riboflavin biosynthesis protein RIBD; RIBD APO structure, structural genomics, structural proteomi europe, spine, hydrolase, oxidoreductase; 2.60A {Escherichia coli} PDB: 2obc_A* 2o7p_A*

Probab=99.39  E-value=4.1e-13  Score=114.79  Aligned_cols=58  Identities=28%  Similarity=0.360  Sum_probs=51.1

Q ss_pred             chhHHHHHHHHHHHHHhcccCC-CCCcEEEEEEeCCeEEEEEecCcccCCCCcchHHHHHhcC
Q 036428           77 QDRDHEFLSKAVEEAYKGVECG-DGGPFGAVVVRSDEVVVSCHNMVLKHTDPTAHAEVTAVRE  138 (138)
Q Consensus        77 ~~~D~~~Mr~AIelA~ka~~~g-~~~PVGAVIV~dGeIIa~G~N~~~~~~DpTaHAE~~AIr~  138 (138)
                      .++|++||++|+++|+++.... +++|||||||+||+||++|||+.    +++.|||++||++
T Consensus        27 ~~~d~~~m~~A~~~A~~~~~~~~~~~~vGaviv~~g~ii~~g~n~~----~g~~HAE~~Ai~~   85 (402)
T 2g6v_A           27 QGQDEYYMARALKLAQRGRFTTHPNPNVGCVIVKDGEIVGEGYHQR----AGEPHAEVHALRM   85 (402)
T ss_dssp             HHHHHHHHHHHHHHHHTTTTTCTTSCCCEEEEEETTEEEEEEECCC----TTSCCHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHhhCccCCCCCCEEEEEEECCEEEEEEeCCC----CCccHHHHHHHHH
Confidence            4579999999999999998642 46999999999999999999987    4799999999973

>2b3z_A Riboflavin biosynthesis protein RIBD; alpha/beta/alpha, deaminase domain and reductase domain, hydrolase, oxidoreductase; 2.41A {Bacillus subtilis} SCOP: c.71.1.2 c.97.1.2 PDB: 2d5n_A* 3ex8_A*

Probab=99.39  E-value=3.1e-13  Score=114.29  Aligned_cols=58  Identities=26%  Similarity=0.291  Sum_probs=49.8

Q ss_pred             chhHHHHHHHHHHHHHhcccC-CCCCcEEEEEEeCCeEEEEEecCcccCCCCcchHHHHHhcC
Q 036428           77 QDRDHEFLSKAVEEAYKGVEC-GDGGPFGAVVVRSDEVVVSCHNMVLKHTDPTAHAEVTAVRE  138 (138)
Q Consensus        77 ~~~D~~~Mr~AIelA~ka~~~-g~~~PVGAVIV~dGeIIa~G~N~~~~~~DpTaHAE~~AIr~  138 (138)
                      -+.|++||++|+++|+++... .+++|||||||+||+||++|||+.    +++.|||++||++
T Consensus        11 ~~~~~~~m~~A~~~A~~~~~~~~~~~~vGaviv~~g~ii~~g~n~~----~~~~HAE~~Ai~~   69 (373)
T 2b3z_A           11 GSMEEYYMKLALDLAKQGEGQTESNPLVGAVVVKDGQIVGMGAHLK----YGEAHAEVHAIHM   69 (373)
T ss_dssp             --CHHHHHHHHHHHHGGGTTSSTTSCCCEEEEESSSSEEEEEECCS----TTSCCHHHHHHHH
T ss_pred             cchHHHHHHHHHHHHHhhCcccCCCCcEEEEEEECCEEEEEEeCCC----CCCcCHHHHHHHH
Confidence            346889999999999999864 246999999999999999999987    4799999999973

>2hxv_A Diaminohydroxyphosphoribosylaminopyrimidine deami amino-6-(5-phosphoribosylamino)uracil...; oxidoreductase, structural genomics; HET: NDP; 1.80A {Thermotoga maritima} SCOP: c.71.1.2 c.97.1.2

Probab=99.37  E-value=6.5e-13  Score=111.90  Aligned_cols=55  Identities=29%  Similarity=0.373  Sum_probs=48.5

Q ss_pred             HHHHHHHHHHHHHhcccCC-CCCcEEEEEEeCCeEEEEEecCcccCCCCcchHHHHHhcC
Q 036428           80 DHEFLSKAVEEAYKGVECG-DGGPFGAVVVRSDEVVVSCHNMVLKHTDPTAHAEVTAVRE  138 (138)
Q Consensus        80 D~~~Mr~AIelA~ka~~~g-~~~PVGAVIV~dGeIIa~G~N~~~~~~DpTaHAE~~AIr~  138 (138)
                      .+.||++|+++|+++.... +++|||||||+||+||++|||+.    +++.|||++||++
T Consensus        14 ~~~~m~~al~lA~~~~~~~~~~~~vGaviv~~g~ii~~g~n~~----~~~~HAE~~Ai~~   69 (360)
T 2hxv_A           14 YETFMKRAIELAKKGLGRVNPNPPVGAVVVKDGRIIAEGFHPY----FGGPHAERMAIES   69 (360)
T ss_dssp             HHHHHHHHHHHHHTTTTTSTTSCCCEEEEEETTEEEEEEECCS----TTSCCHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhccccCCCCCEEEEEEECCEEEEEEeCCC----CCCcCHHHHHHHH
Confidence            4569999999999998653 46999999999999999999987    5799999999973

>1uwz_A Cytidine deaminase; CDD, tetramer, zinc binding, pyrimidine metabolism, salvage, hydrolase; HET: THU; 1.99A {Bacillus subtilis} SCOP: c.97.1.1 PDB: 1ux0_A* 1jtk_A* 1ux1_A*

Probab=98.91  E-value=1.6e-09  Score=80.91  Aligned_cols=57  Identities=18%  Similarity=0.096  Sum_probs=50.8

Q ss_pred             HHHHHHHHHHHHHhcccCCCCCcEEEEEEe-CCeEEEEEecCcccCCCCcchHHHHHhc
Q 036428           80 DHEFLSKAVEEAYKGVECGDGGPFGAVVVR-SDEVVVSCHNMVLKHTDPTAHAEVTAVR  137 (138)
Q Consensus        80 D~~~Mr~AIelA~ka~~~g~~~PVGAVIV~-dGeIIa~G~N~~~~~~DpTaHAE~~AIr  137 (138)
                      |+++|++|++.++++...-.+.||||+|+. ||+|+ .|+|......+++.|||..||+
T Consensus         3 ~~~l~~~A~~aa~~ayapYs~~~VGAal~~~dG~i~-~G~Nvena~~~~t~cAE~~Ai~   60 (136)
T 1uwz_A            3 RQELITEALKARDMAYAPYSKFQVGAALLTKDGKVY-RGCNIENAAYSMCNCAEATALF   60 (136)
T ss_dssp             HHHHHHHHHHHHTTCBCTTTCCCEEEEEEETTSCEE-EEECBCCSSGGGCBCHHHHHHH
T ss_pred             HHHHHHHHHHHHHhccCccCCCCEEEEEEeCCCeEE-EEeCcccCCCCCccCHHHHHHH
Confidence            678999999999999886234999999996 89998 7999998888999999999986

>2fr5_A Cytidine deaminase; tetrahydrouridine, protein-inhibitor COM alternate conformation of Arg68, hydrolase; HET: TYU; 1.48A {Mus musculus} SCOP: c.97.1.1 PDB: 1zab_A* 2fr6_A* 1mq0_A*

Probab=98.78  E-value=7.8e-09  Score=78.32  Aligned_cols=59  Identities=19%  Similarity=0.106  Sum_probs=51.6

Q ss_pred             hhHHHHHHHHHHHHHhcccCCCCCcEEEEEE-eCCeEEEEEecCcccCCCCcchHHHHHhc
Q 036428           78 DRDHEFLSKAVEEAYKGVECGDGGPFGAVVV-RSDEVVVSCHNMVLKHTDPTAHAEVTAVR  137 (138)
Q Consensus        78 ~~D~~~Mr~AIelA~ka~~~g~~~PVGAVIV-~dGeIIa~G~N~~~~~~DpTaHAE~~AIr  137 (138)
                      +.++++|++|++.+++++....+.||||+|+ +||+|+ .|.|......+++.|||..||+
T Consensus        13 ~~~~~L~~~A~~a~~~ayapys~f~VGAal~~~dG~i~-~G~NvEnas~~~t~cAE~~Ai~   72 (146)
T 2fr5_A           13 EHVQRLLLSSREAKKSAYCPYSRFPVGAALLTGDGRIF-SGCNIENACYPLGVCAERTAIQ   72 (146)
T ss_dssp             HHHHHHHHHHHHHHTTCBCTTTCCCEEEEEEETTSCEE-EEECBCCSSGGGCBCHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhcCCCcCCCCEEEEEEeCCCcEE-EEEeccccCCCCCcCHHHHHHH
Confidence            4568899999999999987644699999999 589988 6999988888899999999986

>2z3g_A Blasticidin-S deaminase; hydrolase, cytidine deaminase family, zinc, tetramer; HET: TRE; 1.50A {Aspergillus terreus} SCOP: c.97.1.1 PDB: 1wn6_A* 1wn5_A* 2z3h_A* 2z3j_A 2z3i_A*

Probab=98.67  E-value=5.5e-08  Score=71.96  Aligned_cols=57  Identities=9%  Similarity=0.101  Sum_probs=49.0

Q ss_pred             chhHHHHHHHHHHHHHhcccCCCCCcEEEEEE-eCCeEEEEEecCcccCCCCcchHHHHHhc
Q 036428           77 QDRDHEFLSKAVEEAYKGVECGDGGPFGAVVV-RSDEVVVSCHNMVLKHTDPTAHAEVTAVR  137 (138)
Q Consensus        77 ~~~D~~~Mr~AIelA~ka~~~g~~~PVGAVIV-~dGeIIa~G~N~~~~~~DpTaHAE~~AIr  137 (138)
                      .+.|+++|++|++.++++...+ +.||||+|+ +||+|+ .|.|..  ..+++.|||..||.
T Consensus         4 ~~~~~~L~~~A~~a~~~ay~~s-~f~VGAal~~~dG~i~-~G~NvE--~~~~t~cAE~~Ai~   61 (130)
T 2z3g_A            4 SQEESTLIERATATINSIPISE-DYSVASAALSSDGRIF-TGVNVY--HFTGGPCAELVVLG   61 (130)
T ss_dssp             CHHHHHHHHHHHHHHHHSCCCS-SSCEEEEEEETTSCEE-EEECCC--CTTTCCCHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHhhCCCC-CCCEEEEEEecCCeEE-EEeccc--cCCcccCHHHHHHH
Confidence            4568889999999999998764 599999999 489988 599987  46789999999985

>3g8q_A Predicted RNA-binding protein, contains thump domain; cytidine deaminase, ferredoxin-like domain; 2.40A {Methanopyrus kandleri}

Probab=98.39  E-value=7.1e-08  Score=79.77  Aligned_cols=32  Identities=25%  Similarity=0.271  Sum_probs=28.5

Q ss_pred             CCCcEEEEEEeCCeEEEEEecCcccCCCCcchHHHHHhc
Q 036428           99 DGGPFGAVVVRSDEVVVSCHNMVLKHTDPTAHAEVTAVR  137 (138)
Q Consensus        99 ~~~PVGAVIV~dGeIIa~G~N~~~~~~DpTaHAE~~AIr  137 (138)
                      +|+|||||||+||+||++|.+       ++.|||++||+
T Consensus        20 PNPpVGAVIVkDGeIIA~Ge~-------gTaHAEInAIr   51 (278)
T 3g8q_A           20 PKRTVTAALLEGGEIVAVEEA-------DDEHAERKLVR   51 (278)
T ss_dssp             CCSSCEEEEEETTEEEEEEEC-------SSSCHHHHHHH
T ss_pred             CCCCEEEEEEECCEEEEecCC-------CCCCHHHHHhC
Confidence            469999999999999999922       89999999986

>3b8f_A Putative blasticidin S deaminase; cytidine deaminase, structural genomics, MCSG, protein structure initiative; 1.90A {Bacillus anthracis}

Probab=98.28  E-value=1.1e-06  Score=65.86  Aligned_cols=56  Identities=5%  Similarity=-0.079  Sum_probs=49.0

Q ss_pred             hHHHHHHHHHHHHHhcccCCCCCcEEEEEEe-CCeEEEEEecCcccCCCCcchHHHHHhc
Q 036428           79 RDHEFLSKAVEEAYKGVECGDGGPFGAVVVR-SDEVVVSCHNMVLKHTDPTAHAEVTAVR  137 (138)
Q Consensus        79 ~D~~~Mr~AIelA~ka~~~g~~~PVGAVIV~-dGeIIa~G~N~~~~~~DpTaHAE~~AIr  137 (138)
                      .|+++|+.|++.+++++....  ||||+|+. ||+|+ .|.|......+++.|||..||.
T Consensus         3 ~~~~L~~~A~~a~~~ayaPyS--~VGAAl~~~dG~i~-~G~NvEnas~~~~lcAEr~Ai~   59 (142)
T 3b8f_A            3 IEQQLYDVVKQLIEQRYPNDW--GGAAAIRVEDGTIY-TSVAPDVINASTELCMETGAIL   59 (142)
T ss_dssp             HHHHHHHHHHHHHHHHCSSSC--EEEEEEEETTSCEE-EECCCCCSSGGGCCCTTHHHHH
T ss_pred             HHHHHHHHHHHHHHhcCCCCC--CEEEEEEeCCCcEE-EEECcccccCCcccCHHHHHHH
Confidence            578899999999999987653  99999984 89888 7999988888899999999984

>1r5t_A Cytidine deaminase; zinc dependent deaminase, RNA editing, apobec-1 related protein, hydrolase; 2.00A {Saccharomyces cerevisiae} SCOP: c.97.1.1

Probab=98.15  E-value=4.7e-06  Score=62.42  Aligned_cols=59  Identities=12%  Similarity=0.014  Sum_probs=49.7

Q ss_pred             hhHHHHHHHHHHHHHhcccCCCCCcEEEEEEe-CCeEEEEEecCcccCCCCcchHHHHHhc
Q 036428           78 DRDHEFLSKAVEEAYKGVECGDGGPFGAVVVR-SDEVVVSCHNMVLKHTDPTAHAEVTAVR  137 (138)
Q Consensus        78 ~~D~~~Mr~AIelA~ka~~~g~~~PVGAVIV~-dGeIIa~G~N~~~~~~DpTaHAE~~AIr  137 (138)
                      ..+++++++|++.+++++..-.+.||||+|+. ||+|+ .|.|-....-+++.|||..||.
T Consensus         9 ~~~~~L~~~A~~a~~~ayaPYS~f~VGAAl~~~dG~i~-~G~NvEnasy~~t~cAEr~Ai~   68 (142)
T 1r5t_A            9 RQLEALKRAALKACELSYSPYSHFRVGCSILTNNDVIF-TGANVENASYSNCICAERSAMI   68 (142)
T ss_dssp             HHHHHHHHHHHHHGGGCBCTTTCCCEEEEEECTTSCEE-EEECBCCSSGGGCBCHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHhcCCCcCCCCEEEEEEeCCCCEE-EEEeecccCCCCCcCHHHHHHH
Confidence            45678999999999998875345899999995 88877 6999887777899999999984

>3r2n_A Cytidine deaminase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, tuberculosis; 2.30A {Mycobacterium leprae} SCOP: c.97.1.0

Probab=98.07  E-value=6.2e-06  Score=61.99  Aligned_cols=58  Identities=12%  Similarity=0.023  Sum_probs=49.1

Q ss_pred             hHHHHHHHHHHHHHhcccCCCCCcEEEEEEe-CCeEEEEEecCcccCCCCcchHHHHHhc
Q 036428           79 RDHEFLSKAVEEAYKGVECGDGGPFGAVVVR-SDEVVVSCHNMVLKHTDPTAHAEVTAVR  137 (138)
Q Consensus        79 ~D~~~Mr~AIelA~ka~~~g~~~PVGAVIV~-dGeIIa~G~N~~~~~~DpTaHAE~~AIr  137 (138)
                      .+++++++|++.+++++..-.+.||||+|.. ||+|+ .|.|-......++.|||..||.
T Consensus         9 ~~~~L~~~A~~a~~~ayaPyS~f~VGAAll~~dG~i~-~G~NvEnasy~~t~CAEr~Ai~   67 (138)
T 3r2n_A            9 NWDTLQKAAVAARANSYAPYSNFPVGVAGFVNDGRLI-TGVNVENASYGLALCAECSMIS   67 (138)
T ss_dssp             CHHHHHHHHHHHHTTCBCTTTCCCCEEEEEETTSCEE-EEECBCCSSGGGCBCHHHHHHH
T ss_pred             hHHHHHHHHHHHHHhccCCCCCCcEEEEEEeCCCcEE-EEEcccccCCCCCcCHHHHHHH
Confidence            4677999999999998875445899999986 88876 9999887777789999999984

>2d30_A Cytidine deaminase; purines, pyrimidines, nucleosides, nucleotides, salvage of nucleosides and nucleotides, structural genomics; 2.40A {Bacillus anthracis} SCOP: c.97.1.1

Probab=98.03  E-value=9.9e-06  Score=60.94  Aligned_cols=60  Identities=17%  Similarity=0.081  Sum_probs=49.8

Q ss_pred             chhHHHHHHHHHHHHHhcccCCCCCcEEEEEEe-CCeEEEEEecCcccCCCCcchHHHHHhc
Q 036428           77 QDRDHEFLSKAVEEAYKGVECGDGGPFGAVVVR-SDEVVVSCHNMVLKHTDPTAHAEVTAVR  137 (138)
Q Consensus        77 ~~~D~~~Mr~AIelA~ka~~~g~~~PVGAVIV~-dGeIIa~G~N~~~~~~DpTaHAE~~AIr  137 (138)
                      ...|+++|++|++.+++++..-.+.||||+|+. ||+|+ .|.|-....-+.+.|||..||.
T Consensus         9 ~~~~~~L~~~A~~a~~~AyaPYS~f~VGAAll~~dG~i~-~G~NvEnasy~~t~CAEr~Ai~   69 (141)
T 2d30_A            9 HMNSKQLIQEAIEARKQAYVPYSKFQVGAALLTQDGKVY-RGCNVENASYGLCNCAERTALF   69 (141)
T ss_dssp             -CCHHHHHHHHHHHHTTCBCTTTCCCEEEEEEETTCCEE-EEECBCCSSGGGCBCHHHHHHH
T ss_pred             ccCHHHHHHHHHHHHHhcCCCcCCCcEEEEEEeCCCCEE-EeeccccCCCCcccCHHHHHHH
Confidence            456889999999999999875445899999995 88766 8999887777789999999984

>3mpz_A Cytidine deaminase; ssgcid, structu genomics, seattle structural genomics center for infectious hydrolase; 1.70A {Mycobacterium smegmatis} PDB: 3ijf_X 4f3w_A

Probab=97.71  E-value=6.9e-05  Score=57.19  Aligned_cols=60  Identities=22%  Similarity=0.097  Sum_probs=49.7

Q ss_pred             chhHHHHHHHHHHHHHhcccCCCCCcEEEEEEe-CCeEEEEEecCcccCCCCcchHHHHHhc
Q 036428           77 QDRDHEFLSKAVEEAYKGVECGDGGPFGAVVVR-SDEVVVSCHNMVLKHTDPTAHAEVTAVR  137 (138)
Q Consensus        77 ~~~D~~~Mr~AIelA~ka~~~g~~~PVGAVIV~-dGeIIa~G~N~~~~~~DpTaHAE~~AIr  137 (138)
                      ...+++.+++|++..++++..-.+.+|||+|.. ||+|+ .|.|-....-..+.|||..||.
T Consensus        22 ~~~~~~L~~~A~~a~~~AYaPYS~F~VGAAll~~dG~i~-tG~NvEnasy~~t~CAEr~Ai~   82 (150)
T 3mpz_A           22 MVNWNALRSKAIEVSRHAYAPYSGFPVGAAALVDDGRTV-TGCNVENVSYGLGLCAECAVVC   82 (150)
T ss_dssp             SCCHHHHHHHHHHHHTTCBCTTTCCCCEEEEEETTSCEE-EEECBCCSSGGGCBCHHHHHHH
T ss_pred             cHHHHHHHHHHHHHHHhccCCCCCCCEEEEEEeCCCCEE-EEEecccccCCccccHHHHHHH
Confidence            345678999999999998865445899999985 88877 9999887777789999999984

>1ctt_A Cytidine deaminase; hydrolase; HET: DHZ; 2.20A {Escherichia coli} SCOP: c.97.1.1 c.97.1.1 PDB: 1aln_A* 1af2_A* 1ctu_A*

Probab=97.28  E-value=0.00038  Score=57.90  Aligned_cols=58  Identities=14%  Similarity=0.049  Sum_probs=49.7

Q ss_pred             hHHHHHHHHHHHHHhcccCCCCCcEEEEEEe-CCeEEEEEecCcccCCCCcchHHHHHhc
Q 036428           79 RDHEFLSKAVEEAYKGVECGDGGPFGAVVVR-SDEVVVSCHNMVLKHTDPTAHAEVTAVR  137 (138)
Q Consensus        79 ~D~~~Mr~AIelA~ka~~~g~~~PVGAVIV~-dGeIIa~G~N~~~~~~DpTaHAE~~AIr  137 (138)
                      .|+++++.|++.+++++....+.||||+|+. ||+ |..|.|-.....+++.|||..||.
T Consensus       187 ~~~~L~~~A~~a~~~ayaPYS~f~VGAAl~~~dG~-i~tG~NvEnasy~~tlCAEr~Ai~  245 (294)
T 1ctt_A          187 TGDALSQAAIAAANRSHMPYSKSPSGVALECKDGR-IFSGSYAENAAFNPTLPPLQGALI  245 (294)
T ss_dssp             CSSHHHHHHHHHHHTCBCTTTCCCEEEEEEETTSC-EEEEECBCCTTSTTCBCHHHHHHH
T ss_pred             ChHHHHHHHHHHHHhcCCCcCCCceEEEEEeCCCC-EEEEEeeecCCCCCccCHHHHHHH
Confidence            3468999999999999877656999999995 775 667999998888999999999974

>3oj6_A Blasticidin-S deaminase; ssgcid, seattle structural genomics for infectious disease, hydrolase; 1.70A {Coccidioides immitis}

Probab=96.83  E-value=0.0053  Score=47.03  Aligned_cols=58  Identities=10%  Similarity=0.027  Sum_probs=43.9

Q ss_pred             CchhHHHHHHHHHHHHHhcccCCCCCcEEEEEEe-CCeEEEEEecCcccCCCCcchHHHHHhc
Q 036428           76 VQDRDHEFLSKAVEEAYKGVECGDGGPFGAVVVR-SDEVVVSCHNMVLKHTDPTAHAEVTAVR  137 (138)
Q Consensus        76 ~~~~D~~~Mr~AIelA~ka~~~g~~~PVGAVIV~-dGeIIa~G~N~~~~~~DpTaHAE~~AIr  137 (138)
                      ..+.|++.++.|.+..+++..++ +.+|||++.. ||+|+ .|.|-..  -..+.+||..||-
T Consensus        27 L~~ed~~Li~~A~~a~~~~PyS~-~f~VGAAll~~dG~i~-tG~NVEn--~~~~lCAEr~Ai~   85 (158)
T 3oj6_A           27 LSAAGQNLIDTATSVINGIPVSD-FYSVASAAISDDGRVF-SGVNVYH--FNGGPCAELVVLG   85 (158)
T ss_dssp             CCHHHHHHHHHHHHHHHTSCCCS-SSCEEEEEEETTSCEE-EEECCCC--TTTCCCHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHHhCCCCC-CCcEEEEEEeCCCCEE-EEEcccc--CCccccHHHHHHH
Confidence            45678889999999877643332 2799999986 88876 8999753  4568899999873

>1ctt_A Cytidine deaminase; hydrolase; HET: DHZ; 2.20A {Escherichia coli} SCOP: c.97.1.1 c.97.1.1 PDB: 1aln_A* 1af2_A* 1ctu_A*

Probab=96.79  E-value=0.0025  Score=52.92  Aligned_cols=57  Identities=19%  Similarity=0.049  Sum_probs=39.8

Q ss_pred             HHHHHHHHHHHH-HhcccCCCCCcEEEEEEe-CCeEEEEEecCcccC--CCCcchHHHHHhc
Q 036428           80 DHEFLSKAVEEA-YKGVECGDGGPFGAVVVR-SDEVVVSCHNMVLKH--TDPTAHAEVTAVR  137 (138)
Q Consensus        80 D~~~Mr~AIelA-~ka~~~g~~~PVGAVIV~-dGeIIa~G~N~~~~~--~DpTaHAE~~AIr  137 (138)
                      ++++|..+...| ++++..-.+.+|||++.. ||+|+ .|.|-....  -+.+.|||..||.
T Consensus        49 ~~~ll~~~a~~a~~~AyaPyS~f~VGAall~~dG~i~-~G~NvEnas~~~~~t~CAEr~Ai~  109 (294)
T 1ctt_A           49 EDALAFALLPLAAACARTPLSNFNVGAIARGVSGTWY-FGANMEFIGATMQQTVHAEQSAIS  109 (294)
T ss_dssp             HHHHHHHHHHHHHHTCBCTTTCCCCEEEEEETTSCEE-EEECBCCTTSCGGGCBCHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhccCccCCCcEEEEEEeCCCCEE-EEEcCCccCccCCCccCHHHHHHH
Confidence            455555555444 556664345999999995 88866 899977543  2358999999974

>3dmo_A Cytidine deaminase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, hydrolase; 1.60A {Burkholderia pseudomallei}

Probab=96.31  E-value=0.0095  Score=44.63  Aligned_cols=60  Identities=20%  Similarity=0.081  Sum_probs=48.3

Q ss_pred             chhHHHHHHHHHHHHHhcccCCCCCcEEEEEEe-CCeEEEEEecCcccCCCCcchHHHHHhc
Q 036428           77 QDRDHEFLSKAVEEAYKGVECGDGGPFGAVVVR-SDEVVVSCHNMVLKHTDPTAHAEVTAVR  137 (138)
Q Consensus        77 ~~~D~~~Mr~AIelA~ka~~~g~~~PVGAVIV~-dGeIIa~G~N~~~~~~DpTaHAE~~AIr  137 (138)
                      ...+.+.+++|.+..++++..-.+.+|||++.. ||+ |-.|.|-....-..+.+||..||-
T Consensus         8 ~~~~~~L~~~A~~a~~~AyaPYS~F~VGAAll~~dG~-iytG~NVEnasy~~t~CAEr~Ai~   68 (138)
T 3dmo_A            8 HMTHHALIEAAKAAREKAYAPYSNFKVGAALVTNDGK-VFHGCNVENASYGLCNCAERTALF   68 (138)
T ss_dssp             TCCHHHHHHHHHHHHTTCBCTTTCCCEEEEEEETTSC-EEEEECBCCSSGGGCBCHHHHHHH
T ss_pred             cccHHHHHHHHHHHHHhccCCcCCCCEEEEEEeCCCC-EEEEEeecccccccccCHHHHHHH
Confidence            446788999999999998876556899999986 777 557999876655668999999873

>2nyt_A Probable C->U-editing enzyme apobec-2; cytidine deaminase, zinc-ION binding, hydrolase; 2.50A {Homo sapiens} PDB: 2rpz_A

Probab=96.25  E-value=0.0044  Score=48.47  Aligned_cols=38  Identities=21%  Similarity=0.107  Sum_probs=30.6

Q ss_pred             CCCCcEEEEEEe--C---CeEEEEEecCcccCCCCcchHHHHHhcC
Q 036428           98 GDGGPFGAVVVR--S---DEVVVSCHNMVLKHTDPTAHAEVTAVRE  138 (138)
Q Consensus        98 g~~~PVGAVIV~--d---GeIIa~G~N~~~~~~DpTaHAE~~AIr~  138 (138)
                      +.+..+.|..|+  +   +.+|++|+|+.   .+++.|||++||++
T Consensus        30 ~r~~tyLcy~v~~~~~~~~~ii~~G~~~~---~~~~~HAE~~Ai~~   72 (190)
T 2nyt_A           30 GRNKTFLCYVVEAQGKGGQVQASRGYLED---EHAAAHAEEAFFNT   72 (190)
T ss_pred             CCCceEEEEEEEecCCCCCCeEEEEECCC---CCCCcCHHHHHHHH
Confidence            444778999986  3   46999999987   47899999999963

>4eg2_A Cytidine deaminase; UMP synthesis, Zn binding, hydrolase; HET: URI; 2.20A {Vibrio cholerae}

Probab=94.22  E-value=0.074  Score=44.35  Aligned_cols=57  Identities=12%  Similarity=0.018  Sum_probs=47.5

Q ss_pred             HHHHHHHHHHHHHhcccCCCCCcEEEEEEe-CCeEEEEEecCcccCCCCcchHHHHHhc
Q 036428           80 DHEFLSKAVEEAYKGVECGDGGPFGAVVVR-SDEVVVSCHNMVLKHTDPTAHAEVTAVR  137 (138)
Q Consensus        80 D~~~Mr~AIelA~ka~~~g~~~PVGAVIV~-dGeIIa~G~N~~~~~~DpTaHAE~~AIr  137 (138)
                      +++.++.|++.+++++..-.+.||||.|.. ||+ |-.|.|-.....+++..||..||-
T Consensus       192 ~~~L~~~A~~a~~~ayaPYS~~~vGAAl~t~dG~-iytG~nvEnAay~~slcAEr~Al~  249 (298)
T 4eg2_A          192 DEELIQQALRAMNISHSPYTQNFSGVALKMRSGA-IYLGAYAENAAFNPSLPPLQVALA  249 (298)
T ss_dssp             CCHHHHHHHHHHTTCBCTTTCCCEEEEEEETTSC-EEEEECBCCTTSTTCBCHHHHHHH
T ss_pred             HHHHHHHHHHHHHhccCCccCCCeEEEEEeCCCC-EEEEEeeeccccCCCCCHHHHHHH
Confidence            357899999999998876556899999996 677 567999887788899999999873

>4eg2_A Cytidine deaminase; UMP synthesis, Zn binding, hydrolase; HET: URI; 2.20A {Vibrio cholerae}

Probab=88.93  E-value=0.68  Score=38.54  Aligned_cols=57  Identities=23%  Similarity=0.119  Sum_probs=37.3

Q ss_pred             HHHHHHHHHHHH-HhcccCCCCCcEEEEEEe-CCeEEEEEecCcccCC--CCcchHHHHHhc
Q 036428           80 DHEFLSKAVEEA-YKGVECGDGGPFGAVVVR-SDEVVVSCHNMVLKHT--DPTAHAEVTAVR  137 (138)
Q Consensus        80 D~~~Mr~AIelA-~ka~~~g~~~PVGAVIV~-dGeIIa~G~N~~~~~~--DpTaHAE~~AIr  137 (138)
                      +.+++...+..| ++++..-.+.+|||++.. ||+ |-.|.|-...+.  ..+-|||..||-
T Consensus        52 ~~el~~~l~~~A~~~AyaPyS~F~VGAAll~~dG~-i~~G~NvEna~as~~~t~CAEr~Ai~  112 (298)
T 4eg2_A           52 DADLRVALLPIAAAYSYAPISEFYVGAIVRGISGR-LYLGANMEFTGAQLGQTVHAEQCAIS  112 (298)
T ss_dssp             HHHHHHHHHHHHHTTCBCTTTCCCCEEEEEETTSC-EEEEECBCCTTSCGGGCBCHHHHHHH
T ss_pred             HHHHHHHHHHHHHhhCcCCcCCCcEEEEEEECCCc-EEEEEcccccccccCccccHHHHHHH
Confidence            444554444444 455554456899999986 777 567899764322  247899999873

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	138
d2g84a1	189	c.97.1.2 (A:1-189) Putative deaminase NE0047 {Nitr	1e-12
d1wkqa_	158	c.97.1.2 (A:) Guanine deaminase GuaD {Bacillus sub	3e-10
d1wwra1	151	c.97.1.2 (A:1-151) tRNA adenosine deaminase TadA {	4e-08
d1p6oa_	156	c.97.1.2 (A:) Cytosine deaminase {Baker's yeast (S	4e-07
d2a8na1	130	c.97.1.2 (A:2-131) Cytidine and deoxycytidylate de	1e-06
d1z3aa1	156	c.97.1.2 (A:13-168) tRNA adenosine deaminase TadA	1e-05
d2b3ja1	151	c.97.1.2 (A:1-151) tRNA adenosine deaminase TadA {	6e-05
d2hxva2	147	c.97.1.2 (A:1-147) Riboflavin biosynthesis protein	0.001

>d2g84a1 c.97.1.2 (A:1-189) Putative deaminase NE0047 {Nitrosomonas europaea [TaxId: 915]} Length = 189

class: Alpha and beta proteins (a/b)
fold: Cytidine deaminase-like
superfamily: Cytidine deaminase-like
family: Deoxycytidylate deaminase-like
domain: Putative deaminase NE0047
species: Nitrosomonas europaea [TaxId: 915]

 Score = 59.7 bits (144), Expect = 1e-12
 Identities = 17/71 (23%), Positives = 28/71 (39%), Gaps = 3/71 (4%)

Query: 70  AAHQEAVQDRDHEFLSKAVEEAYKGVECGDGGPFGAVVVRSD--EVVVSCHNMVLKHTDP 127
           A ++  V       +   +E     +    GGPF A V   D   ++ +  N V+     
Sbjct: 16  ANNEPRVLAAPEARMGYVLELVRANIAAD-GGPFAAAVFERDSGLLIAAGTNRVVPGRCS 74

Query: 128 TAHAEVTAVRE 138
            AHAE+ A+  
Sbjct: 75  AAHAEILALSL 85

>d1wkqa_ c.97.1.2 (A:) Guanine deaminase GuaD {Bacillus subtilis [TaxId: 1423]} Length = 158

class: Alpha and beta proteins (a/b)
fold: Cytidine deaminase-like
superfamily: Cytidine deaminase-like
family: Deoxycytidylate deaminase-like
domain: Guanine deaminase GuaD
species: Bacillus subtilis [TaxId: 1423]

 Score = 53.0 bits (126), Expect = 3e-10
 Identities = 29/59 (49%), Positives = 37/59 (62%)

Query: 80  DHEFLSKAVEEAYKGVECGDGGPFGAVVVRSDEVVVSCHNMVLKHTDPTAHAEVTAVRE 138
              FL +AV  A +GV  G GGPFGAV+V+   ++    N V    DPTAHAEVTA+R+
Sbjct: 5   HETFLKRAVTLACEGVNAGIGGPFGAVIVKDGAIIAEGQNNVTTSNDPTAHAEVTAIRK 63

>d1wwra1 c.97.1.2 (A:1-151) tRNA adenosine deaminase TadA {Aquifex aeolicus [TaxId: 63363]} Length = 151

class: Alpha and beta proteins (a/b)
fold: Cytidine deaminase-like
superfamily: Cytidine deaminase-like
family: Deoxycytidylate deaminase-like
domain: tRNA adenosine deaminase TadA
species: Aquifex aeolicus [TaxId: 63363]

 Score = 47.1 bits (111), Expect = 4e-08
 Identities = 25/60 (41%), Positives = 36/60 (60%), Gaps = 2/60 (3%)

Query: 80  DHE-FLSKAVEEAYKGVECGDGGPFGAVVVRSDEVVVSCHNMVLKHTDPTAHAEVTAVRE 138
             E FL  A+ EA +  E G   P GA++V+  E++   HN V +  DPTAHAE+ A++E
Sbjct: 2   GKEYFLKVALREAKRAFEKG-EVPVGAIIVKEGEIISKAHNSVEELKDPTAHAEMLAIKE 60

>d1p6oa_ c.97.1.2 (A:) Cytosine deaminase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 156

class: Alpha and beta proteins (a/b)
fold: Cytidine deaminase-like
superfamily: Cytidine deaminase-like
family: Deoxycytidylate deaminase-like
domain: Cytosine deaminase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 44.5 bits (104), Expect = 4e-07
 Identities = 17/60 (28%), Positives = 28/60 (46%), Gaps = 3/60 (5%)

Query: 80  DHEFLSKAVEEAYKGVECGDGGPFGAVVV--RSDEVVVSCHNMVLKHTDPTAHAEVTAVR 137
           D + +  A EEA  G + G G P G  ++  +   V+   HNM  +    T H E++ + 
Sbjct: 9   DQKGMDIAYEEAALGYKEG-GVPIGGCLINNKDGSVLGRGHNMRFQKGSATLHGEISTLE 67

>d2a8na1 c.97.1.2 (A:2-131) Cytidine and deoxycytidylate deaminase CodA {Agrobacterium tumefaciens [TaxId: 358]} Length = 130

class: Alpha and beta proteins (a/b)
fold: Cytidine deaminase-like
superfamily: Cytidine deaminase-like
family: Deoxycytidylate deaminase-like
domain: Cytidine and deoxycytidylate deaminase CodA
species: Agrobacterium tumefaciens [TaxId: 358]

 Score = 42.5 bits (99), Expect = 1e-06
 Identities = 19/59 (32%), Positives = 27/59 (45%), Gaps = 1/59 (1%)

Query: 80  DHEFLSKAVEEAYKGVECGDGGPFGAVVVRSDEVVVSCHNMVLKHTDPTAHAEVTAVRE 138
              F+  A+ EA    E  +  P GAV+V    V+    N   +  D TAHAE+  +R 
Sbjct: 3   RTHFMELALVEARSAGERDEV-PIGAVLVLDGRVIARSGNRTRELNDVTAHAEIAVIRM 60

>d1z3aa1 c.97.1.2 (A:13-168) tRNA adenosine deaminase TadA {Escherichia coli [TaxId: 562]} Length = 156

class: Alpha and beta proteins (a/b)
fold: Cytidine deaminase-like
superfamily: Cytidine deaminase-like
family: Deoxycytidylate deaminase-like
domain: tRNA adenosine deaminase TadA
species: Escherichia coli [TaxId: 562]

 Score = 40.6 bits (94), Expect = 1e-05
 Identities = 16/53 (30%), Positives = 27/53 (50%), Gaps = 1/53 (1%)

Query: 80  DHEFLSKAVEEAYKGVECGDGGPFGAVVVRSDEVVVSCHNMVLKHTDPTAHAE 132
              ++  A+  A +  +  +  P GAV+V ++ V+    N  +   DPTAHAE
Sbjct: 7   HEYWMRHALTLAKRAWDEREV-PVGAVLVHNNRVIGEGWNRPIGRHDPTAHAE 58

>d2b3ja1 c.97.1.2 (A:1-151) tRNA adenosine deaminase TadA {Staphylococcus aureus [TaxId: 1280]} Length = 151

class: Alpha and beta proteins (a/b)
fold: Cytidine deaminase-like
superfamily: Cytidine deaminase-like
family: Deoxycytidylate deaminase-like
domain: tRNA adenosine deaminase TadA
species: Staphylococcus aureus [TaxId: 1280]

 Score = 38.4 bits (88), Expect = 6e-05
 Identities = 21/52 (40%), Positives = 30/52 (57%), Gaps = 1/52 (1%)

Query: 80  DHEFLSKAVEEAYKGVECGDGGPFGAVVVRSDEVVVSCHNMVLKHTDPTAHA 131
           D  F++ A+EEA K  + G   P GA++ + DEV+   HN+      PTAHA
Sbjct: 4   DIYFMTLAIEEAKKAAQLG-EVPIGAIITKDDEVIARAHNLRETLQQPTAHA 54

>d2hxva2 c.97.1.2 (A:1-147) Riboflavin biosynthesis protein RibD {Thermotoga maritima [TaxId: 2336]} Length = 147

class: Alpha and beta proteins (a/b)
fold: Cytidine deaminase-like
superfamily: Cytidine deaminase-like
family: Deoxycytidylate deaminase-like
domain: Riboflavin biosynthesis protein RibD
species: Thermotoga maritima [TaxId: 2336]

 Score = 34.9 bits (79), Expect = 0.001
 Identities = 15/57 (26%), Positives = 25/57 (43%), Gaps = 2/57 (3%)

Query: 81  HE-FLSKAVEEAYKGV-ECGDGGPFGAVVVRSDEVVVSCHNMVLKHTDPTAHAEVTA 135
           +E F+ +A+E A KG+       P GAVVV+   ++    +           A  +A
Sbjct: 2   YETFMKRAIELAKKGLGRVNPNPPVGAVVVKDGRIIAEGFHPYFGGPHAERMAIESA 58

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	138
d1wkqa_	158	Guanine deaminase GuaD {Bacillus subtilis [TaxId:	99.71
d1z3aa1	156	tRNA adenosine deaminase TadA {Escherichia coli [T	99.71
d1wwra1	151	tRNA adenosine deaminase TadA {Aquifex aeolicus [T	99.69
d2a8na1	130	Cytidine and deoxycytidylate deaminase CodA {Agrob	99.67
d2b3ja1	151	tRNA adenosine deaminase TadA {Staphylococcus aure	99.65
d1p6oa_	156	Cytosine deaminase {Baker's yeast (Saccharomyces c	99.65
d2g84a1	189	Putative deaminase NE0047 {Nitrosomonas europaea [	99.64
d2hxva2	147	Riboflavin biosynthesis protein RibD {Thermotoga m	99.48
d2b3za2	145	Riboflavin biosynthesis protein RibD {Bacillus sub	99.44
d1vq2a_	193	Deoxycytidylate deaminase {Bacteriophage T4 [TaxId	99.09
d1alna2	144	Two-domain cytidine deaminase {Escherichia coli [T	97.65
d2fr5a1	136	mono-domain cytidine deaminase {Mouse (Mus musculu	97.05
d2d30a1	124	mono-domain cytidine deaminase {Bacillus anthracis	97.03
d1r5ta_	141	mono-domain cytidine deaminase {Baker's yeast (Sac	96.8
d1uwza_	130	mono-domain cytidine deaminase {Bacillus subtilis	96.38
d2z3ga1	123	Blasticidin-S deaminase {Aspergillus terreus [TaxI	95.42
d1alna1	150	Two-domain cytidine deaminase {Escherichia coli [T	93.58

>d1wkqa_ c.97.1.2 (A:) Guanine deaminase GuaD {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: Cytidine deaminase-like
superfamily: Cytidine deaminase-like
family: Deoxycytidylate deaminase-like
domain: Guanine deaminase GuaD
species: Bacillus subtilis [TaxId: 1423]

Probab=99.71  E-value=2.2e-18  Score=129.96  Aligned_cols=60  Identities=48%  Similarity=0.785  Sum_probs=56.3

Q ss_pred             hHHHHHHHHHHHHHhcccCCCCCcEEEEEEeCCeEEEEEecCcccCCCCcchHHHHHhcC
Q 036428           79 RDHEFLSKAVEEAYKGVECGDGGPFGAVVVRSDEVVVSCHNMVLKHTDPTAHAEVTAVRE  138 (138)
Q Consensus        79 ~D~~~Mr~AIelA~ka~~~g~~~PVGAVIV~dGeIIa~G~N~~~~~~DpTaHAE~~AIr~  138 (138)
                      +|++||++|+++|+++...|.+.|||||||+||+||++|+|++...+||+.|||++|||+
T Consensus         4 ~~~~~M~~Ai~~A~~~~~~g~~~PvGaviv~~~~ii~~g~n~~~~~~~~t~HAE~~ai~~   63 (158)
T d1wkqa_           4 NHETFLKRAVTLACEGVNAGIGGPFGAVIVKDGAIIAEGQNNVTTSNDPTAHAEVTAIRK   63 (158)
T ss_dssp             CHHHHHHHHHHHHHHHHHTTSSSSCEEEEEETTEEEEEEECCHHHHTCTTCCHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHhhhcCCCCCEEEEEEecccceeeccceeeccCCCcccHHHHHHHH
Confidence            589999999999999999885589999999999999999999999999999999999973

>d1z3aa1 c.97.1.2 (A:13-168) tRNA adenosine deaminase TadA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Cytidine deaminase-like
superfamily: Cytidine deaminase-like
family: Deoxycytidylate deaminase-like
domain: tRNA adenosine deaminase TadA
species: Escherichia coli [TaxId: 562]

Probab=99.71  E-value=3.4e-18  Score=127.34  Aligned_cols=60  Identities=30%  Similarity=0.418  Sum_probs=56.2

Q ss_pred             chhHHHHHHHHHHHHHhcccCCCCCcEEEEEEeCCeEEEEEecCcccCCCCcchHHHHHhc
Q 036428           77 QDRDHEFLSKAVEEAYKGVECGDGGPFGAVVVRSDEVVVSCHNMVLKHTDPTAHAEVTAVR  137 (138)
Q Consensus        77 ~~~D~~~Mr~AIelA~ka~~~g~~~PVGAVIV~dGeIIa~G~N~~~~~~DpTaHAE~~AIr  137 (138)
                      ..+|++||++|+++|+++...++ +|||||||+||+||++|+|+.....||+.|||++|++
T Consensus         4 ~~~~e~~M~~Ai~~A~~a~~~~~-~pvGaViv~~g~Iia~g~n~~~~~~~~~~HAE~~ai~   63 (156)
T d1z3aa1           4 EFSHEYWMRHALTLAKRAWDERE-VPVGAVLVHNNRVIGEGWNRPIGRHDPTAHAEIMALR   63 (156)
T ss_dssp             TTSHHHHHHHHHHHHHHHHHTTS-CCCEEEEEETTEEEEEEECCHHHHTCTTCCHHHHHHH
T ss_pred             ccCHHHHHHHHHHHHHHhccCCC-CCEEEEEEECCeEEEEeeccccccCcchhhHHHHhHH
Confidence            45689999999999999998876 9999999999999999999999999999999999986

>d1wwra1 c.97.1.2 (A:1-151) tRNA adenosine deaminase TadA {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: Cytidine deaminase-like
superfamily: Cytidine deaminase-like
family: Deoxycytidylate deaminase-like
domain: tRNA adenosine deaminase TadA
species: Aquifex aeolicus [TaxId: 63363]

Probab=99.69  E-value=5.5e-18  Score=126.32  Aligned_cols=59  Identities=41%  Similarity=0.642  Sum_probs=55.6

Q ss_pred             hHHHHHHHHHHHHHhcccCCCCCcEEEEEEeCCeEEEEEecCcccCCCCcchHHHHHhcC
Q 036428           79 RDHEFLSKAVEEAYKGVECGDGGPFGAVVVRSDEVVVSCHNMVLKHTDPTAHAEVTAVRE  138 (138)
Q Consensus        79 ~D~~~Mr~AIelA~ka~~~g~~~PVGAVIV~dGeIIa~G~N~~~~~~DpTaHAE~~AIr~  138 (138)
                      +|++||++|+++|+++...++ .|||||||++|+||++|+|+..+.+||+.|||++||++
T Consensus         2 ~~e~fM~~Ai~~A~~a~~~~~-~pVGaVIV~~~~ii~~g~n~~~~~~~~~~HAE~~ai~~   60 (151)
T d1wwra1           2 GKEYFLKVALREAKRAFEKGE-VPVGAIIVKEGEIISKAHNSVEELKDPTAHAEMLAIKE   60 (151)
T ss_dssp             SHHHHHHHHHHHHHHHHHTTS-CCCEEEEEETTEEEEEEECCHHHHTCTTCCHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHhhcCC-CCEEEEEEECCeeeeeecccccccCcchhhHHHHHHHH
Confidence            589999999999999998876 99999999999999999999999999999999999973

>d2a8na1 c.97.1.2 (A:2-131) Cytidine and deoxycytidylate deaminase CodA {Agrobacterium tumefaciens [TaxId: 358]}

class: Alpha and beta proteins (a/b)
fold: Cytidine deaminase-like
superfamily: Cytidine deaminase-like
family: Deoxycytidylate deaminase-like
domain: Cytidine and deoxycytidylate deaminase CodA
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=99.67  E-value=1.5e-17  Score=121.32  Aligned_cols=59  Identities=32%  Similarity=0.408  Sum_probs=55.4

Q ss_pred             hHHHHHHHHHHHHHhcccCCCCCcEEEEEEeCCeEEEEEecCcccCCCCcchHHHHHhcC
Q 036428           79 RDHEFLSKAVEEAYKGVECGDGGPFGAVVVRSDEVVVSCHNMVLKHTDPTAHAEVTAVRE  138 (138)
Q Consensus        79 ~D~~~Mr~AIelA~ka~~~g~~~PVGAVIV~dGeIIa~G~N~~~~~~DpTaHAE~~AIr~  138 (138)
                      +|++||++|+++|+++...++ .|||||||+||+||+.|+|++.+.+|++.|||+.|+++
T Consensus         2 ~~~~fM~~Al~~A~~a~~~~~-~PVGavIV~~~~ii~~g~n~~~~~~~~~~HaE~~ai~~   60 (130)
T d2a8na1           2 ERTHFMELALVEARSAGERDE-VPIGAVLVLDGRVIARSGNRTRELNDVTAHAEIAVIRM   60 (130)
T ss_dssp             CHHHHHHHHHHHHHHHHHTTS-CCCEEEEEETTEEEEEEECCHHHHTCTTCCHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHHhhccCC-CCEEEEEEECCeEEEeecccccccccccchhHHHHHHH
Confidence            478999999999999998886 99999999999999999999999999999999999863

>d2b3ja1 c.97.1.2 (A:1-151) tRNA adenosine deaminase TadA {Staphylococcus aureus [TaxId: 1280]}

class: Alpha and beta proteins (a/b)
fold: Cytidine deaminase-like
superfamily: Cytidine deaminase-like
family: Deoxycytidylate deaminase-like
domain: tRNA adenosine deaminase TadA
species: Staphylococcus aureus [TaxId: 1280]

Probab=99.65  E-value=4.2e-17  Score=120.64  Aligned_cols=59  Identities=39%  Similarity=0.617  Sum_probs=55.5

Q ss_pred             hhHHHHHHHHHHHHHhcccCCCCCcEEEEEEeCCeEEEEEecCcccCCCCcchHHHHHhc
Q 036428           78 DRDHEFLSKAVEEAYKGVECGDGGPFGAVVVRSDEVVVSCHNMVLKHTDPTAHAEVTAVR  137 (138)
Q Consensus        78 ~~D~~~Mr~AIelA~ka~~~g~~~PVGAVIV~dGeIIa~G~N~~~~~~DpTaHAE~~AIr  137 (138)
                      .+|++||++||++|+++...++ +|||||||+||++|+.|+|+....+||+.|||+.|++
T Consensus         2 ~~D~~fM~~Ai~~A~~a~~~g~-~PVGaViV~~~~ii~~g~~~~~~~~~~~~HAe~~a~~   60 (151)
T d2b3ja1           2 TNDIYFMTLAIEEAKKAAQLGE-VPIGAIITKDDEVIARAHNLRETLQQPTAHAEHIAIE   60 (151)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTTS-CCCEEEEEETTEEEEEEECCHHHHTCTTCCHHHHHHH
T ss_pred             ccHHHHHHHHHHHHHHhcccCC-CCEEEEEEecccchhhhhccccccCcchhhhhhhhhH
Confidence            4689999999999999988776 9999999999999999999999999999999999986

>d1p6oa_ c.97.1.2 (A:) Cytosine deaminase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: Cytidine deaminase-like
superfamily: Cytidine deaminase-like
family: Deoxycytidylate deaminase-like
domain: Cytosine deaminase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.65  E-value=3e-17  Score=123.64  Aligned_cols=60  Identities=27%  Similarity=0.401  Sum_probs=55.6

Q ss_pred             chhHHHHHHHHHHHHHhcccCCCCCcEEEEEEe--CCeEEEEEecCcccCCCCcchHHHHHhc
Q 036428           77 QDRDHEFLSKAVEEAYKGVECGDGGPFGAVVVR--SDEVVVSCHNMVLKHTDPTAHAEVTAVR  137 (138)
Q Consensus        77 ~~~D~~~Mr~AIelA~ka~~~g~~~PVGAVIV~--dGeIIa~G~N~~~~~~DpTaHAE~~AIr  137 (138)
                      ..+|++||++|+++|+++...++ .|||||||.  +|+||++|||++...+||+.|||++||+
T Consensus         6 ~~~D~~~M~~A~~~A~~a~~~g~-~PvGaviV~~~~g~Iia~g~N~~~~~~~~~~HAE~~Ai~   67 (156)
T d1p6oa_           6 SKWDQKGMDIAYEEAALGYKEGG-VPIGGCLINNKDGSVLGRGHNMRFQKGSATLHGEISTLE   67 (156)
T ss_dssp             CTTHHHHHHHHHHHHHHHHHTTS-CCCEEEEEETTTCCEEEEEECCHHHHTCSSCCHHHHHHH
T ss_pred             cHHHHHHHHHHHHHHHHHHHcCC-CCEEEEEEEeCCCEEEEEEccccccccccccchHHHHHH
Confidence            45799999999999999998886 899999994  7999999999999999999999999996

>d2g84a1 c.97.1.2 (A:1-189) Putative deaminase NE0047 {Nitrosomonas europaea [TaxId: 915]}

class: Alpha and beta proteins (a/b)
fold: Cytidine deaminase-like
superfamily: Cytidine deaminase-like
family: Deoxycytidylate deaminase-like
domain: Putative deaminase NE0047
species: Nitrosomonas europaea [TaxId: 915]

Probab=99.64  E-value=8.5e-17  Score=124.54  Aligned_cols=63  Identities=24%  Similarity=0.289  Sum_probs=57.0

Q ss_pred             cCchhHHHHHHHHHHHHHhcccCCCCCcEEEEEEe--CCeEEEEEecCcccCCCCcchHHHHHhcC
Q 036428           75 AVQDRDHEFLSKAVEEAYKGVECGDGGPFGAVVVR--SDEVVVSCHNMVLKHTDPTAHAEVTAVRE  138 (138)
Q Consensus        75 ~~~~~D~~~Mr~AIelA~ka~~~g~~~PVGAVIV~--dGeIIa~G~N~~~~~~DpTaHAE~~AIr~  138 (138)
                      .....++++|++|+++|+++...|+ .|||||||+  +|+||++|+|++.+.+|||.|||++|||+
T Consensus        21 ~~~~~~e~~M~~ai~lAr~a~~~g~-~P~GaviV~~~~g~Iia~g~N~~~~~~dpt~HAEi~AI~~   85 (189)
T d2g84a1          21 RVLAAPEARMGYVLELVRANIAADG-GPFAAAVFERDSGLLIAAGTNRVVPGRCSAAHAEILALSL   85 (189)
T ss_dssp             CBCCSHHHHHHHHHHHHHHHHHTTC-CSCEEEEEETTTCBEEEEEECCTTTTTCTTCCHHHHHHHH
T ss_pred             cCCCChHHHHHHHHHHHHHHHHcCC-CCEEEEEEECCCCEEEEEEcCCcCcCCCCcccHHHHHHHH
Confidence            3455789999999999999998886 999999998  58999999999999999999999999973

>d2hxva2 c.97.1.2 (A:1-147) Riboflavin biosynthesis protein RibD {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: Cytidine deaminase-like
superfamily: Cytidine deaminase-like
family: Deoxycytidylate deaminase-like
domain: Riboflavin biosynthesis protein RibD
species: Thermotoga maritima [TaxId: 2336]

Probab=99.48  E-value=3.2e-14  Score=105.31  Aligned_cols=54  Identities=30%  Similarity=0.402  Sum_probs=47.6

Q ss_pred             HHHHHHHHHHHHHhcccC-CCCCcEEEEEEeCCeEEEEEecCcccCCCCcchHHHHHhc
Q 036428           80 DHEFLSKAVEEAYKGVEC-GDGGPFGAVVVRSDEVVVSCHNMVLKHTDPTAHAEVTAVR  137 (138)
Q Consensus        80 D~~~Mr~AIelA~ka~~~-g~~~PVGAVIV~dGeIIa~G~N~~~~~~DpTaHAE~~AIr  137 (138)
                      ++.||++|+++|+++... .+++|||||||+||+||++|+|+.    .+++|||+.|++
T Consensus         2 he~~M~~Al~~A~~~~~~~~~~~pVGaViV~~g~IIa~g~n~~----~~~~hae~~ai~   56 (147)
T d2hxva2           2 YETFMKRAIELAKKGLGRVNPNPPVGAVVVKDGRIIAEGFHPY----FGGPHAERMAIE   56 (147)
T ss_dssp             HHHHHHHHHHHHHTTTTTSTTSCCCEEEEEETTEEEEEEECCS----TTSCCHHHHHHH
T ss_pred             hHHHHHHHHHHHHhccccCCCCCcEEEEEEECCeEEEeeceec----cCCchHHHHHHH
Confidence            679999999999999764 345999999999999999999976    467899999986

>d2b3za2 c.97.1.2 (A:1-145) Riboflavin biosynthesis protein RibD {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: Cytidine deaminase-like
superfamily: Cytidine deaminase-like
family: Deoxycytidylate deaminase-like
domain: Riboflavin biosynthesis protein RibD
species: Bacillus subtilis [TaxId: 1423]

Probab=99.44  E-value=5.2e-14  Score=102.93  Aligned_cols=54  Identities=28%  Similarity=0.367  Sum_probs=46.1

Q ss_pred             HHHHHHHHHHHHHhcccCCC-CCcEEEEEEeCCeEEEEEecCcccCCCCcchHHHHHhc
Q 036428           80 DHEFLSKAVEEAYKGVECGD-GGPFGAVVVRSDEVVVSCHNMVLKHTDPTAHAEVTAVR  137 (138)
Q Consensus        80 D~~~Mr~AIelA~ka~~~g~-~~PVGAVIV~dGeIIa~G~N~~~~~~DpTaHAE~~AIr  137 (138)
                      |++||++|+++|+++...++ ++|||||||+||+||+.|+|+..    ++.|||..|++
T Consensus         2 De~fM~~Al~~A~~a~~~~~~~p~VGaViV~~g~ii~~g~n~~~----~~~hae~~a~~   56 (145)
T d2b3za2           2 EEYYMKLALDLAKQGEGQTESNPLVGAVVVKDGQIVGMGAHLKY----GEAHAEVHAIH   56 (145)
T ss_dssp             HHHHHHHHHHHHGGGTTSSTTSCCCEEEEESSSSEEEEEECCST----TSCCHHHHHHH
T ss_pred             hHHHHHHHHHHHHhcccCCCCCCCEEEEEEecCceecccccccc----CCCchhhHHHH
Confidence            78999999999999987764 56899999999999999999875    55677766654

>d1vq2a_ c.97.1.2 (A:) Deoxycytidylate deaminase {Bacteriophage T4 [TaxId: 10665]}

class: Alpha and beta proteins (a/b)
fold: Cytidine deaminase-like
superfamily: Cytidine deaminase-like
family: Deoxycytidylate deaminase-like
domain: Deoxycytidylate deaminase
species: Bacteriophage T4 [TaxId: 10665]

Probab=99.09  E-value=6.6e-11  Score=90.10  Aligned_cols=43  Identities=16%  Similarity=0.168  Sum_probs=37.1

Q ss_pred             hHHHHHHHHHHHHHhcccCCCCCcEEEEEEeCCeEEEEEecCccc
Q 036428           79 RDHEFLSKAVEEAYKGVECGDGGPFGAVVVRSDEVVVSCHNMVLK  123 (138)
Q Consensus        79 ~D~~~Mr~AIelA~ka~~~g~~~PVGAVIV~dGeIIa~G~N~~~~  123 (138)
                      ..+.||+.|+..|+++.+.  ..+||||||+||+||+.|||....
T Consensus         2 ~~~~~M~~A~~~A~rS~c~--~~~VGAVIV~~~~IIs~G~Ng~p~   44 (193)
T d1vq2a_           2 KASTVLQIAYLVSQESKCC--SWKVGAVIEKNGRIISTGYNGSPA   44 (193)
T ss_dssp             CHHHHHHHHHHHHTTCCCS--SBCCEEEEEETTEEEEEEECBCCT
T ss_pred             CHHHHHHHHHHHHHhCCCC--CCCeEEEEEECCEEEEEeecCCcC
Confidence            3578999999999998654  488999999999999999996543

>d1alna2 c.97.1.1 (A:151-294) Two-domain cytidine deaminase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Cytidine deaminase-like
superfamily: Cytidine deaminase-like
family: Cytidine deaminase
domain: Two-domain cytidine deaminase
species: Escherichia coli [TaxId: 562]

Probab=97.65  E-value=5.5e-05  Score=55.54  Aligned_cols=58  Identities=14%  Similarity=0.049  Sum_probs=49.7

Q ss_pred             hHHHHHHHHHHHHHhcccCCCCCcEEEEEEe-CCeEEEEEecCcccCCCCcchHHHHHhc
Q 036428           79 RDHEFLSKAVEEAYKGVECGDGGPFGAVVVR-SDEVVVSCHNMVLKHTDPTAHAEVTAVR  137 (138)
Q Consensus        79 ~D~~~Mr~AIelA~ka~~~g~~~PVGAVIV~-dGeIIa~G~N~~~~~~DpTaHAE~~AIr  137 (138)
                      .|+..+++|++.+++++..-.+.||||+|.. ||+|. .|.|......+++-|||..||.
T Consensus        37 ~~d~L~~~A~~aa~~ayaPYS~~~vGaal~~~~G~i~-~G~nvEnaa~~~slcAE~~Ai~   95 (144)
T d1alna2          37 TGDALSQAAIAAANRSHMPYSKSPSGVALECKDGRIF-SGSYAENAAFNPTLPPLQGALI   95 (144)
T ss_dssp             CSSHHHHHHHHHHHTCBCTTTCCCEEEEEEETTSCEE-EEECBCCTTSTTCBCHHHHHHH
T ss_pred             CHHHHHHHHHHHHHhccCCCCCCcceEEEEeCCCCEE-EEeeeeccccCCCccHHHHHHH
Confidence            4567899999999999987666999999886 78865 8999888888999999999984

>d2fr5a1 c.97.1.1 (A:11-146) mono-domain cytidine deaminase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: Cytidine deaminase-like
superfamily: Cytidine deaminase-like
family: Cytidine deaminase
domain: mono-domain cytidine deaminase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.05  E-value=0.00071  Score=48.41  Aligned_cols=60  Identities=18%  Similarity=0.108  Sum_probs=47.5

Q ss_pred             chhHHHHHHHHHHHHHhcccCCCCCcEEEEEEe-CCeEEEEEecCcccCCCCcchHHHHHhc
Q 036428           77 QDRDHEFLSKAVEEAYKGVECGDGGPFGAVVVR-SDEVVVSCHNMVLKHTDPTAHAEVTAVR  137 (138)
Q Consensus        77 ~~~D~~~Mr~AIelA~ka~~~g~~~PVGAVIV~-dGeIIa~G~N~~~~~~DpTaHAE~~AIr  137 (138)
                      ++..++.++.|.+..++|+..-.+.+|||++.. ||+ |-.|.|........+-|||..||-
T Consensus         2 p~~~~~l~~~A~~a~~~AyaPYS~f~VGAa~~~~dG~-i~~G~NvEnasy~~~iCAEr~Ai~   62 (136)
T d2fr5a1           2 PEHVQRLLLSSREAKKSAYCPYSRFPVGAALLTGDGR-IFSGCNIENACYPLGVCAERTAIQ   62 (136)
T ss_dssp             CHHHHHHHHHHHHHHTTCBCTTTCCCEEEEEEETTSC-EEEEECBCCSSGGGCBCHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHhcCcCCccCCcEEEEEEeCCCC-EEEEEeecccccccccchhheeee
Confidence            345667788888888888876556999999997 677 557899877766778999999973

>d2d30a1 c.97.1.1 (A:1-124) mono-domain cytidine deaminase {Bacillus anthracis [TaxId: 1392]}

class: Alpha and beta proteins (a/b)
fold: Cytidine deaminase-like
superfamily: Cytidine deaminase-like
family: Cytidine deaminase
domain: mono-domain cytidine deaminase
species: Bacillus anthracis [TaxId: 1392]

Probab=97.03  E-value=0.00067  Score=47.87  Aligned_cols=57  Identities=18%  Similarity=0.094  Sum_probs=47.1

Q ss_pred             HHHHHHHHHHHHHhcccCCCCCcEEEEEEe-CCeEEEEEecCcccCCCCcchHHHHHhc
Q 036428           80 DHEFLSKAVEEAYKGVECGDGGPFGAVVVR-SDEVVVSCHNMVLKHTDPTAHAEVTAVR  137 (138)
Q Consensus        80 D~~~Mr~AIelA~ka~~~g~~~PVGAVIV~-dGeIIa~G~N~~~~~~DpTaHAE~~AIr  137 (138)
                      +++.++.|++..++++..-.+.+|||++.. ||+ |-.|.|-.......+.|||..||-
T Consensus         3 ~~~L~~~A~~a~~~ayaPyS~f~VGAal~~~~G~-i~~G~NvEn~s~~~~~CAEr~Ai~   60 (124)
T d2d30a1           3 SKQLIQEAIEARKQAYVPYSKFQVGAALLTQDGK-VYRGCNVENASYGLCNCAERTALF   60 (124)
T ss_dssp             HHHHHHHHHHHHTTCBCTTTCCCEEEEEEETTCC-EEEEECBCCSSGGGCBCHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCcCCccCCcEEEEEEeCCCC-EEEEEeeccccCCcccCHHHHHHH
Confidence            567899999999998875556999999996 777 667999887777778999999973

>d1r5ta_ c.97.1.1 (A:) mono-domain cytidine deaminase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: Cytidine deaminase-like
superfamily: Cytidine deaminase-like
family: Cytidine deaminase
domain: mono-domain cytidine deaminase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.80  E-value=0.0012  Score=47.45  Aligned_cols=57  Identities=12%  Similarity=0.030  Sum_probs=44.5

Q ss_pred             hHHHHHHHHHHHHHhcccCCCCCcEEEEEEe-CCeEEEEEecCcccCCCCcchHHHHHh
Q 036428           79 RDHEFLSKAVEEAYKGVECGDGGPFGAVVVR-SDEVVVSCHNMVLKHTDPTAHAEVTAV  136 (138)
Q Consensus        79 ~D~~~Mr~AIelA~ka~~~g~~~PVGAVIV~-dGeIIa~G~N~~~~~~DpTaHAE~~AI  136 (138)
                      ..+...++|++..++|+..-.+.+|||++.. ||+ |-.|.|-....-..+-|||..||
T Consensus         9 ~~~~L~~~a~~a~~~ayaPYS~f~VGAAl~t~~G~-I~~G~NvEnas~~~~lCAEr~Ai   66 (141)
T d1r5ta_           9 QLEALKRAALKACELSYSPYSHFRVGCSILTNNDV-IFTGANVENASYSNCICAERSAM   66 (141)
T ss_dssp             HHHHHHHHHHHHGGGCBCTTTCCCEEEEEECTTSC-EEEEECBCCSSGGGCBCHHHHHH
T ss_pred             HHHHHHHHHHHHHHhCcCCccCCcEEEEEEeCCCC-EEEEEeecccccccccCHHHHHH
Confidence            3456677788877877765456899999996 788 45599988777778999999997

>d1uwza_ c.97.1.1 (A:) mono-domain cytidine deaminase {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: Cytidine deaminase-like
superfamily: Cytidine deaminase-like
family: Cytidine deaminase
domain: mono-domain cytidine deaminase
species: Bacillus subtilis [TaxId: 1423]

Probab=96.38  E-value=0.0035  Score=44.28  Aligned_cols=56  Identities=18%  Similarity=0.116  Sum_probs=45.2

Q ss_pred             HHHHHHHHHHHHHhcccCCCCCcEEEEEEe-CCeEEEEEecCcccCCCCcchHHHHHh
Q 036428           80 DHEFLSKAVEEAYKGVECGDGGPFGAVVVR-SDEVVVSCHNMVLKHTDPTAHAEVTAV  136 (138)
Q Consensus        80 D~~~Mr~AIelA~ka~~~g~~~PVGAVIV~-dGeIIa~G~N~~~~~~DpTaHAE~~AI  136 (138)
                      .++.++.|++..++|+..-.+.+|||++.. +|+ |-.|.|........+.+||..||
T Consensus         3 ~~~L~~~A~~a~~~ayaPyS~f~VGAa~~~~~G~-i~~G~NvEnas~~~~~CAEr~Ai   59 (130)
T d1uwza_           3 RQELITEALKARDMAYAPYSKFQVGAALLTKDGK-VYRGCNIENAAYSMCNCAEATAL   59 (130)
T ss_dssp             HHHHHHHHHHHHTTCBCTTTCCCEEEEEEETTSC-EEEEECBCCSSGGGCBCHHHHHH
T ss_pred             HHHHHHHHHHHHHhCcCCccCCcEEEEEEeCCCC-EEEEeeeccccccccccceehhh
Confidence            456788899988888865556999999996 677 55789988777678889999987

>d2z3ga1 c.97.1.1 (A:2-124) Blasticidin-S deaminase {Aspergillus terreus [TaxId: 33178]}

class: Alpha and beta proteins (a/b)
fold: Cytidine deaminase-like
superfamily: Cytidine deaminase-like
family: Cytidine deaminase
domain: Blasticidin-S deaminase
species: Aspergillus terreus [TaxId: 33178]

Probab=95.42  E-value=0.031  Score=39.11  Aligned_cols=56  Identities=7%  Similarity=0.142  Sum_probs=40.3

Q ss_pred             chhHHHHHHHHHHHHHhcccCCCCCcEEEEEEe-CCeEEEEEecCcccCCCCcchHHHHHh
Q 036428           77 QDRDHEFLSKAVEEAYKGVECGDGGPFGAVVVR-SDEVVVSCHNMVLKHTDPTAHAEVTAV  136 (138)
Q Consensus        77 ~~~D~~~Mr~AIelA~ka~~~g~~~PVGAVIV~-dGeIIa~G~N~~~~~~DpTaHAE~~AI  136 (138)
                      .+.+...+++|.+... +...-.+.+|||++.. ||+|. .|.|....  ..+-+||..||
T Consensus         3 ~~~~~~Li~~A~~~~~-~~~~~s~f~VGAa~l~~~G~i~-~G~NvEN~--s~glCAEr~Ai   59 (123)
T d2z3ga1           3 SQEESTLIERATATIN-SIPISEDYSVASAALSSDGRIF-TGVNVYHF--TGGPCAELVVL   59 (123)
T ss_dssp             CHHHHHHHHHHHHHHH-HSCCCSSSCEEEEEEETTSCEE-EEECCCCT--TTCCCHHHHHH
T ss_pred             CHHHHHHHHHHHHHHh-cCCCCCCCCEEEEEEeCCCCEE-EEEcccCC--CCccchhhhHh
Confidence            4567888999887543 4443345999999886 77755 78897643  34679999997

>d1alna1 c.97.1.1 (A:1-150) Two-domain cytidine deaminase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Cytidine deaminase-like
superfamily: Cytidine deaminase-like
family: Cytidine deaminase
domain: Two-domain cytidine deaminase
species: Escherichia coli [TaxId: 562]

Probab=93.58  E-value=0.073  Score=38.69  Aligned_cols=57  Identities=21%  Similarity=0.032  Sum_probs=38.1

Q ss_pred             HHHHHHHHHHHHHhcccCCCCCcEEEEEEe-CCeEEEEEecCccc--CCCCcchHHHHHhc
Q 036428           80 DHEFLSKAVEEAYKGVECGDGGPFGAVVVR-SDEVVVSCHNMVLK--HTDPTAHAEVTAVR  137 (138)
Q Consensus        80 D~~~Mr~AIelA~ka~~~g~~~PVGAVIV~-dGeIIa~G~N~~~~--~~DpTaHAE~~AIr  137 (138)
                      ++-.+..+-..|..|+..-.+.+|||++.. +|+ |-.|.|....  .-..+-|||..||-
T Consensus        50 ~el~~~llp~Aa~~AyaPyS~F~VGAa~~~~~G~-iy~G~NvE~~nas~~~sicAEr~Ai~  109 (150)
T d1alna1          50 DALAFALLPLAAACARTPLSNFNVGAIARGVSGT-WYFGANMEFIGATMQQTVHAEQSAIS  109 (150)
T ss_dssp             HHHHHHHHHHHHTTCBCTTTCCCCEEEEEETTSC-EEEEECBCCTTSCGGGCBCHHHHHHH
T ss_pred             HHHHHHHHHHHHHhccCCCCCCceEEEEEeCCCC-EEEEEeecccCCccCCCCCHHHHHHH
Confidence            343444444445556655456999999996 676 6679997732  33467899999973