Citrus Sinensis ID: 036434

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240----
Protein Sequence
QYQKIGTYTYPAMFFCIAICIPISVLWIFMDKVLILLGQDPDFFVEACNYAIWLILTLFGYAILRSLSHNLQAQSLILALFLSSCATLCLQILLCWVLVSKTDFGNTGAELTIGISYWFNEIFPSTKEFSFFAHLSVVMFCLEWCSYEILVLLSGILPNPKLETSVLTIWYLYRNPPLCSTRVANELGAGNPEPTRLSTCVVIFLAVAEAAIGSVALFCCRNVLAYLFNTDKDVVNYVSELVPA
Secondary Structure (PSIPRED)
cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHcccc
Secondary Structure Prediction (SSPRO)
cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHEHHHHEEEHcccHHHHHEEEEcHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHccc
Coil and Loop (DISEMBL)
qyqkigtytypAMFFCIAICIPISVLWIFMDKVLILLGQDPDFFVEACNYAIWLILTLFGYAILRSLSHNLQAQSLILALFLSSCATLCLQILLCWVLVSktdfgntgaeLTIGISYwfneifpstkefsFFAHLSVVMFCLEWCSYEILVLLSgilpnpkletSVLTIWYlyrnpplcstrvanelgagnpeptrlSTCVVIFLAVAEAAIGSVALFCCRNVLAYLFNTDKDVVNYVSELVPA
Flexible Loop (DISEMBL)
qyqkigtyTYPAMFFCIAICIPISVLWIFMDKVLILLGQDPDFFVEACNYAIWLILTLFGYAILRSLSHNLQAQSLILALFLSSCATLCLQILLCWVLVSKTDFGNTGAELTIGISYWFNEIFPSTKEFSFFAHLSVVMFCLEWCSYEILVLLSGILPNPKLETSVLTIWYLYRNPPLCSTRVANELGAGNPEPTRLSTCVVIFLAVAEAAIGSVALFCCRNVLAYLFNTDKDVVNYVSELVPA
Low Complexity Region (SEG)
QYQKIGTYTYPAMFFCIAICIPISVLWIFMDKVLILLGQDPDFFVEACNYAIWLILTLFGYAILRSLSHNLQAQSLILALFLSSCATLCLQILLCWVLVSKTDFGNTGAELTIGISYWFNEIFPSTKEFSFFAHLSVVMFCLEWCSYEILVLLSGILPNPKLETSVLTIWYLYRNPPLCSTRVANELGAGNPEPTRLSTCVVIFLAVAEAAIGSVALFCCRNVLAYLFNTDKDVVNYVSELVPA
Disordered region (IsUnstruct)
****IGTYTYPAMFFCIAICIPISVLWIFMDKVLILLGQDPDFFVEACNYAIWLILTLFGYAILRSLSHNLQAQSLILALFLSSCATLCLQILLCWVLVSKTDFGNTGAELTIGISYWFNEIFPSTKEFSFFAHLSVVMFCLEWCSYEILVLLSGILPNPKLETSVLTIWYLYRNPPLCSTRVANELGAGNPEPTRLSTCVVIFLAVAEAAIGSVALFCCRNVLAYLFNTDKDVVNYVSE****
Disordered Region (DISOPRED)
QYQKIGTYTYPAMFFCIAICIPISVLWIFMDKVLILLGQDPDFFVEACNYAIWLILTLFGYAILRSLSHNLQAQSLILALFLSSCATLCLQILLCWVLVSKTDFGNTGAELTIGISYWFNEIFPSTKEFSFFAHLSVVMFCLEWCSYEILVLLSGILPNPKLETSVLTIWYLYRNPPLCSTRVANELGAGNPEPTRLSTCVVIFLAVAEAAIGSVALFCCRNVLAYLFNTDKDVVNYVSELVPA
Disordered Region (DISEMBL)
QYQKIGTYTYPAMFFCIAICIPISVLWIFMDKVLILLGQDPDFFVEACNYAIWLILTLFGYAILRSLSHNLQAQSLILALFLSSCATLCLQILLCWVLVSKTDFGNTGAELTIGISYWFNEIFPSTKEFSFFAHLSVVMFCLEWCSYEILVLLSGILPNPKLETSVLTIWYLYRNPPLCSTRVANELGAGNPEPTRLSTCVVIFLAVAEAAIGSVALFCCRNVLAYLFNTDKDVVNYVSELVPA
Disordered Region (DISPRO)
QYQKIGTYTYPAMFFCIAICIPISVLWIFMDKVLILLGQDPDFFVEACNYAIWLILTLFGYAILRSLSHNLQAQSLILALFLSSCATLCLQILLCWVLVSKTDFGNTGAELTIGISYWFNEIFPSTKEFSFFAHLSVVMFCLEWCSYEILVLLSGILPNPKLETSVLTIWYLYRNPPLCSTRVANELGAGNPEPTRLSTCVVIFLAVAEAAIGSVALFCCRNVLAYLFNTDKDVVNYVSELVPA
Transmembrane Helix (TMHMM)
iiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (HMMTOP)
iiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
QYQKIGTYTYPAMFFCIAICIPISVLWIFMDKVLILLGQDPDFFVEACNYAIWLILTLFGYAILRSLSHNLQAQSLILALFLSSCATLCLQILLCWVLVSKTDFGNTGAELTIGISYWFNEIFPSTKEFSFFAHLSVVMFCLEWCSYEILVLLSGILPNPKLETSVLTIWYLYRNPPLCSTRVANELGAGNPEPTRLSTCVVIFLAVAEAAIGSVALFCCRNVLAYLFNTDKDVVNYVSELVPA
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	244	2.2.26 [Sep-21-2011]
Q8GXM8	476	MATE efflux family protei	no	no	0.995	0.510	0.414	1e-50
Q9SIA3	476	MATE efflux family protei	no	no	0.995	0.510	0.418	1e-48
Q9SIA5	476	MATE efflux family protei	no	no	0.995	0.510	0.4	3e-48
Q8RWF5	483	MATE efflux family protei	no	no	0.995	0.503	0.418	2e-47
Q9SIA1	477	MATE efflux family protei	no	no	0.987	0.505	0.417	3e-47
Q9SIA4	476	MATE efflux family protei	no	no	0.995	0.510	0.425	2e-46
Q9LYT3	507	Protein TRANSPARENT TESTA	no	no	0.995	0.479	0.294	1e-18
Q9LUH2	477	MATE efflux family protei	no	no	0.860	0.440	0.297	1e-18
Q9LUH3	469	MATE efflux family protei	no	no	0.950	0.494	0.280	6e-17
Q9UT92	533	Uncharacterized transport	yes	no	0.913	0.418	0.295	8e-17

>sp|Q8GXM8|MATE7_ARATH MATE efflux family protein 7 OS=Arabidopsis thaliana GN=DTXL3 PE=2 SV=1

 Score =  199 bits (507), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 114/275 (41%), Positives = 161/275 (58%), Gaps = 32/275 (11%)

Query: 1   QYQKIGTYTYPAMFFCIAICIPISVLWIFMDKVLILLGQDPDFFVEACNYAIWLILTLFG 60
           QY+KIGTYTY AM   I IC  IS+LWI+++K+LI LGQ+PD    A +Y++WL+  LF 
Sbjct: 101 QYEKIGTYTYSAMASNIPICFIISILWIYIEKLLITLGQEPDISRVAGSYSLWLVPALFA 160

Query: 61  YAILRSLSHNLQAQSLILALFLSSCATLCLQILLCWVLVSKTDFGNTGAELTIGISYWF- 119
           +AI   L+  L AQ L+++L  S+  TL   I +CW LV     G+ GA + I +S+WF 
Sbjct: 161 HAIFLPLTRFLLAQGLVISLLYSAMTTLLFHIAVCWTLVFALGLGSNGAAIAISLSFWFY 220

Query: 120 ----------------------NEIFPSTKEFSFFAHLSVVMFCLEWCSYEILVLLSGIL 157
                                 N+   S K++  +   S  + CLEW  +E+L+L SG+L
Sbjct: 221 AVILSCHVRFFSSCEKTRGFVSNDFMSSIKQYFQYGVPSAGLICLEWWLFELLILCSGLL 280

Query: 158 PNPKLETSV----LTIWYLYRNPP-----LCSTRVANELGAGNPEPTRLSTCVVIFLAVA 208
           PNPKLETSV    LTI  L+   P       STRV+N+LGAGNP+  R+S    + L + 
Sbjct: 281 PNPKLETSVLSICLTIGTLHYVIPSGVAAAVSTRVSNKLGAGNPQVARVSVLAGLCLWLV 340

Query: 209 EAAIGSVALFCCRNVLAYLFNTDKDVVNYVSELVP 243
           E+A  S  LF CRN++ Y F+  K+VV+YV+++ P
Sbjct: 341 ESAFFSTLLFTCRNIIGYTFSNSKEVVDYVADISP 375

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SIA3|MATE6_ARATH MATE efflux family protein 6 OS=Arabidopsis thaliana GN=DTXL2 PE=3 SV=2

 Score =  192 bits (489), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 115/275 (41%), Positives = 160/275 (58%), Gaps = 32/275 (11%)

Query: 1   QYQKIGTYTYPAMFFCIAICIPISVLWIFMDKVLILLGQDPDFFVEACNYAIWLILTLFG 60
           QY+K+GTYTY A+   I IC+ IS+LWI+M+K+LI LGQDPD    A +YA+ LI TLF 
Sbjct: 101 QYEKMGTYTYSAISSNIPICVLISILWIYMEKLLISLGQDPDISRVAGSYALRLIPTLFA 160

Query: 61  YAILRSLSHNLQAQSLILALFLSSCATLCLQILLCWVLVSKTDFGNTGAELTIGISYWF- 119
           +AI+  L+  L AQ L+L L   +  TL   I +CW LVS    G+ GA L I +S+WF 
Sbjct: 161 HAIVLPLTRFLLAQGLVLPLLYFALTTLLFHIAVCWTLVSALGLGSNGAALAISVSFWFF 220

Query: 120 ----------------------NEIFPSTKEFSFFAHLSVVMFCLEWCSYEILVLLSGIL 157
                                  +   S K+F  +   S  M CLEW  +E+L+L SG+L
Sbjct: 221 AMTLSCYVRFSSSCEKTRRFVSQDFLSSVKQFFRYGVPSAAMLCLEWWLFELLILCSGLL 280

Query: 158 PNPKLETSVLTI----WYLYRNPPL-----CSTRVANELGAGNPEPTRLSTCVVIFLAVA 208
            NPKLETSVL+I      L+   P+      STRV+N+LGAG P+  R+S    + L + 
Sbjct: 281 QNPKLETSVLSICLTTATLHYVIPVGVAAAVSTRVSNKLGAGIPQVARVSVLAGLCLWLV 340

Query: 209 EAAIGSVALFCCRNVLAYLFNTDKDVVNYVSELVP 243
           E++  S+ LF  RN++ Y F+  K+VV+YV++L P
Sbjct: 341 ESSFFSILLFAFRNIIGYAFSNSKEVVDYVADLSP 375

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SIA5|DTX1_ARATH MATE efflux family protein DTX1 OS=Arabidopsis thaliana GN=DTX1 PE=2 SV=1

 Score =  191 bits (486), Expect = 3e-48,   Method: Compositional matrix adjust.
 Identities = 110/275 (40%), Positives = 152/275 (55%), Gaps = 32/275 (11%)

Query: 1   QYQKIGTYTYPAMFFCIAICIPISVLWIFMDKVLILLGQDPDFFVEACNYAIWLILTLFG 60
           QY+KIGTY Y A+   I IC  IS+LW++++K+LI LGQDP+    A +YA WLI  LFG
Sbjct: 101 QYEKIGTYAYSAIASNIPICFLISILWLYIEKILISLGQDPEISRIAGSYAFWLIPALFG 160

Query: 61  YAILRSLSHNLQAQSLILALFLSSCATLCLQILLCWVLVSKTDFGNTGAELTIGISYWF- 119
            AI+  LS  L  Q L++ L  ++  TL   +L+CW LV     G  G  +   +S+WF 
Sbjct: 161 QAIVIPLSRFLLTQGLVIPLLFTAVTTLLFHVLVCWTLVFLFGLGCNGPAMATSVSFWFY 220

Query: 120 ----------------------NEIFPSTKEFSFFAHLSVVMFCLEWCSYEILVLLSGIL 157
                                  +   S K+F  +   S  M CLEW  +EIL+L SG+L
Sbjct: 221 AVILSCYVRFSSSCEKTRGFVSRDFVSSIKQFFQYGIPSAAMICLEWWLFEILILCSGLL 280

Query: 158 PNPKLETSVLTIWYLYRN---------PPLCSTRVANELGAGNPEPTRLSTCVVIFLAVA 208
           PNPKLETSVL+I                   STRV+N LGAGNP+  R+S    + L + 
Sbjct: 281 PNPKLETSVLSICLTIETLHYVISAGVAAAVSTRVSNNLGAGNPQVARVSVLAGLCLWIV 340

Query: 209 EAAIGSVALFCCRNVLAYLFNTDKDVVNYVSELVP 243
           E+A  S+ LF CRN++ Y F+  K+V++YV++L P
Sbjct: 341 ESAFFSILLFTCRNIIGYAFSNSKEVLDYVADLTP 375

Efflux carrier for plant-derived alkaloids, antibiotics, heavy metal and other toxic compounds. Involved in cadmium detoxification. Requires probably a proton-motive force for the efflux.

Arabidopsis thaliana (taxid: 3702)

>sp|Q8RWF5|MATE9_ARATH MATE efflux family protein 9 OS=Arabidopsis thaliana GN=DTXL5 PE=2 SV=1

 Score =  189 bits (480), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 115/275 (41%), Positives = 152/275 (55%), Gaps = 32/275 (11%)

Query: 1   QYQKIGTYTYPAMFFCIAICIPISVLWIFMDKVLILLGQDPDFFVEACNYAIWLILTLFG 60
           QY KIGTYT+ A+   + I + IS+LW +MDK+ + LGQDPD    A +YA+ LI  L  
Sbjct: 104 QYAKIGTYTFSAIVSNVPIVVLISILWFYMDKLFVSLGQDPDISKVAGSYAVCLIPALLA 163

Query: 61  YAILRSLSHNLQAQSLILALFLSSCATLCLQILLCWVLVSKTDFGNTGAELTIGISYWFN 120
            A+ + L+  LQ Q L+L L   +  TL   I +C +LV     G+ GA L IG+SYWFN
Sbjct: 164 QAVQQPLTRFLQTQGLVLPLLYCAITTLLFHIPVCLILVYAFGLGSNGAALAIGLSYWFN 223

Query: 121 -----------------------EIFPSTKEFSFFAHLSVVMFCLEWCSYEILVLLSGIL 157
                                  +   S K+F  +   S  M  +EW  +E L+L SG+L
Sbjct: 224 VLILALYVRFSSSCEKTRGFVSDDFVLSVKQFFQYGIPSAAMTTIEWSLFEFLILSSGLL 283

Query: 158 PNPKLETSVLTI----WYLYRNPPL-----CSTRVANELGAGNPEPTRLSTCVVIFLAVA 208
           PNPKLETSVL+I      L+   P+      S RV+NELGAGNPE  RL+    IFL   
Sbjct: 284 PNPKLETSVLSICLTTSSLHYVIPMGIGAAGSIRVSNELGAGNPEVARLAVFAGIFLWFL 343

Query: 209 EAAIGSVALFCCRNVLAYLFNTDKDVVNYVSELVP 243
           EA I S  LF CR++  Y F+  K+VV+YV+EL P
Sbjct: 344 EATICSTLLFICRDIFGYAFSNSKEVVDYVTELSP 378

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SIA1|MATE8_ARATH MATE efflux family protein 8 OS=Arabidopsis thaliana GN=DTXL4 PE=3 SV=2

 Score =  188 bits (478), Expect = 3e-47,   Method: Compositional matrix adjust.
 Identities = 114/273 (41%), Positives = 153/273 (56%), Gaps = 32/273 (11%)

Query: 1   QYQKIGTYTYPAMFFCIAICIPISVLWIFMDKVLILLGQDPDFFVEACNYAIWLILTLFG 60
           QY KIGTYT+ A+   + I + IS+LW +MDK+ + LGQDPD    A +YA+ LI  L  
Sbjct: 104 QYTKIGTYTFSAIVSNVPIVVLISILWFYMDKLFVSLGQDPDISKVAGSYAVCLIPALLA 163

Query: 61  YAILRSLSHNLQAQSLILALFLSSCATLCLQILLCWVLVSKTDFGNTGAELTIGISYWFN 120
            A+ + L+  LQ Q L+L L   +  TL   I +C +LV     G+ GA L IG+SYWFN
Sbjct: 164 QAVQQPLTRFLQTQGLVLPLLYCAITTLLFHIPVCLILVYAFGLGSNGAALAIGLSYWFN 223

Query: 121 -----------------------EIFPSTKEFSFFAHLSVVMFCLEWCSYEILVLLSGIL 157
                                  +   S K+F  +   S  M  +EW  +E+L+L SG+L
Sbjct: 224 VLILALYVRFSSACEKTRGFVSDDFVLSVKQFFQYGIPSAAMTTIEWSLFELLILSSGLL 283

Query: 158 PNPKLETSVLTI----WYLYRNPPL-----CSTRVANELGAGNPEPTRLSTCVVIFLAVA 208
           PNPKLETSVL+I      L+   P+      STR++NELGAGNPE  RL+    IFL   
Sbjct: 284 PNPKLETSVLSICLTTSSLHCVIPMGIGAAGSTRISNELGAGNPEVARLAVFAGIFLWFL 343

Query: 209 EAAIGSVALFCCRNVLAYLFNTDKDVVNYVSEL 241
           EA I S  LF C+N+  Y F+  K+VV+YV+EL
Sbjct: 344 EATICSTLLFTCKNIFGYAFSNSKEVVDYVTEL 376

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SIA4|MATE5_ARATH MATE efflux family protein 5 OS=Arabidopsis thaliana GN=DTXL1 PE=3 SV=1

 Score =  186 bits (471), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 117/275 (42%), Positives = 156/275 (56%), Gaps = 32/275 (11%)

Query: 1   QYQKIGTYTYPAMFFCIAICIPISVLWIFMDKVLILLGQDPDFFVEACNYAIWLILTLFG 60
           QY+KIGTYTY A    I IC+ ISVLWI+++K+LI LGQDPD    A +YA+WLI  LF 
Sbjct: 101 QYEKIGTYTYSATASNIPICVLISVLWIYIEKLLISLGQDPDISRVAGSYALWLIPALFA 160

Query: 61  YAILRSLSHNLQAQSLILALFLSSCATLCLQILLCWVLVSKTDFGNTGAELTIGISYWF- 119
           +A    L+  L AQ L+L L   +  TL   I +CW  V     G+ GA + I +S+WF 
Sbjct: 161 HAFFIPLTRFLLAQGLVLPLLYCTLTTLLFHIPVCWAFVYAFGLGSNGAAMAISVSFWFY 220

Query: 120 ----------------NEIFPST------KEFSFFAHLSVVMFCLEWCSYEILVLLSGIL 157
                             +F S+      K+F  F   S  M CLEW  +E+L+L SG+L
Sbjct: 221 VVILSCYVRYSSSCDKTRVFVSSDFVSCIKQFFHFGVPSAAMVCLEWWLFELLILCSGLL 280

Query: 158 PNPKLETSVLTI----WYLYRNPP-----LCSTRVANELGAGNPEPTRLSTCVVIFLAVA 208
           PNPKLETSVL+I      L+   P       STRV+N+LGAG P+  R+S    + L + 
Sbjct: 281 PNPKLETSVLSICLTTASLHYVIPGGVAAAVSTRVSNKLGAGIPQVARVSVLAGLCLWLV 340

Query: 209 EAAIGSVALFCCRNVLAYLFNTDKDVVNYVSELVP 243
           E+A  S  LF CRN++ Y F+  K+VV+YV+ L P
Sbjct: 341 ESAFFSTLLFTCRNIIGYAFSNSKEVVDYVANLTP 375

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LYT3|TT12_ARATH Protein TRANSPARENT TESTA 12 OS=Arabidopsis thaliana GN=TT12 PE=2 SV=1

 Score = 93.6 bits (231), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 81/275 (29%), Positives = 125/275 (45%), Gaps = 32/275 (11%)

Query: 1   QYQKIGTYTYPAMFFCIAICIPISVLWIFMDKVLILLGQDPDFFVEACNYAIWLILTLFG 60
           QY  +G     AM   +A  + ++ L+ +   +L  +GQ      E   +A  +I  ++ 
Sbjct: 125 QYSSMGIICQRAMVLHLAAAVFLTFLYWYSGPILKTMGQSVAIAHEGQIFARGMIPQIYA 184

Query: 61  YAILRSLSHNLQAQSLILALFLSSCATLCLQILLCWVLVSKTDFGNTGAELTIGISYWF- 119
           +A+   +   LQAQ+++  L   S     L  LL W++ +  DFG  GA L +  S+W  
Sbjct: 185 FALACPMQRFLQAQNIVNPLAYMSLGVFLLHTLLTWLVTNVLDFGLLGAALILSFSWWLL 244

Query: 120 ---NEIF----PSTKE----FSFFAH-----------LSVVMFCLEWCSYEILVLLSGIL 157
              N ++    P+ KE    FS  A             S VM CLE    + LV++SG+L
Sbjct: 245 VAVNGMYILMSPNCKETWTGFSTRAFRGIWPYFKLTVASAVMLCLEIWYNQGLVIISGLL 304

Query: 158 PNPKLETSVLTIWYLYRN---------PPLCSTRVANELGAGNPEPTRLSTCVVIFLAVA 208
            NP +    ++I   Y N             S RV+NELGAGNP    LS  VV    V 
Sbjct: 305 SNPTISLDAISICMYYLNWDMQFMLGLSAAISVRVSNELGAGNPRVAMLSVVVVNITTVL 364

Query: 209 EAAIGSVALFCCRNVLAYLFNTDKDVVNYVSELVP 243
            +++  V +   R  L+  F +D +V+  VS+L P
Sbjct: 365 ISSVLCVIVLVFRVGLSKAFTSDAEVIAAVSDLFP 399

May be involved in vacuolar transport of flavonoids.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LUH2|ALF5_ARATH MATE efflux family protein ALF5 OS=Arabidopsis thaliana GN=ALF5 PE=2 SV=1

 Score = 93.2 bits (230), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 72/242 (29%), Positives = 112/242 (46%), Gaps = 32/242 (13%)

Query: 1   QYQKIGTYTYPAMFFCIAICIPISVLWIFMDKVLILLGQDPDFFVEACNYAIWLILTLFG 60
           +Y+ +G +   +    +   I I++ W F + +  LL QDP    +A  Y  +    L  
Sbjct: 113 RYRMLGVHLQSSCIVSLVFSILITIFWFFTESIFGLLRQDPSISKQAALYMKYQAPGLLA 172

Query: 61  YAILRSLSHNLQAQSLILALFLSSCATLCLQILLCWVLVSKTDFGNTGAELTIGISYWF- 119
           Y  L+++    Q QS+I  L + S   L + I   +VLV     G  GA +   IS W  
Sbjct: 173 YGFLQNILRFCQTQSIIAPLVIFSFVPLVINIATAYVLVYVAGLGFIGAPIATSISLWIA 232

Query: 120 ----------NEIFPST-KEFSF--FAHL---------SVVMFCLEWCSYEILVLLSGIL 157
                     +E F  T   FS   F ++         S  M CLE+ ++EILV L+G++
Sbjct: 233 FLSLGTYVMCSEKFKETWTGFSLESFRYIVINLTLSLPSAAMVCLEYWAFEILVFLAGVM 292

Query: 158 PNPKLETSVLTI---------WYLYRNPPLCSTRVANELGAGNPEPTRLSTCVVIFLAVA 208
           PNP++ TS++ I            Y      STRV+NELGAGN +  + +T V + L++ 
Sbjct: 293 PNPEINTSLVAICVNTEAISYMLTYGLSAAASTRVSNELGAGNVKGAKKATSVSVKLSLV 352

Query: 209 EA 210
            A
Sbjct: 353 LA 354

Required for protection of the roots from inhibitory compounds. When expressed in an heterologous system, confers resistance to tetramethylammonium chloride.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LUH3|LAL5_ARATH MATE efflux family protein LAL5 OS=Arabidopsis thaliana GN=LAL5 PE=2 SV=1

 Score = 87.8 bits (216), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 74/264 (28%), Positives = 118/264 (44%), Gaps = 32/264 (12%)

Query: 1   QYQKIGTYTYPAMFFCIAICIPISVLWIFMDKVLILLGQDPDFFVEACNYAIWLILTLFG 60
            Y+ +G +   +    +   I I++LW F + V +LL QDP    +A  Y  +L   L  
Sbjct: 105 SYRMLGIHLQSSCIVSLVFTILITILWFFTESVFLLLRQDPSISKQAALYMKYLAPGLLA 164

Query: 61  YAILRSLSHNLQAQSLILALFLSSCATLCLQILLCWVLVSKTDFGNTGAELTIGISYWF- 119
           Y  L+++    Q Q ++  L L S   L + I   + LV     G  GA +   IS W  
Sbjct: 165 YGFLQNILRFCQTQCIVTPLVLFSFLPLVINIGTTYALVHLAGLGFIGAPIATSISLWIA 224

Query: 120 ----------NEIFPST-KEFSF--FAHL---------SVVMFCLEWCSYEILVLLSGIL 157
                     ++ F  T   FS   F H+         S  M CLE+ ++EILV L+G++
Sbjct: 225 FVSLGFYVICSDKFKETWTGFSMESFHHVVLNLTLSIPSAAMVCLEYWAFEILVFLAGLM 284

Query: 158 PNPKLETSVLTIWYLYRN---------PPLCSTRVANELGAGNPEPTRLSTCVVIFLAVA 208
            NP++ TS++ I     +             STRV+NELGAGN +  + +T V + L++ 
Sbjct: 285 RNPEITTSLVAICVNTESISYMLTCGLSAATSTRVSNELGAGNVKGAKKATSVSVKLSLV 344

Query: 209 EAAIGSVALFCCRNVLAYLFNTDK 232
            A    +A+    +    LF+   
Sbjct: 345 LALGVVIAILVGHDAWVGLFSNSH 368

Arabidopsis thaliana (taxid: 3702)

>sp|Q9UT92|YL47_SCHPO Uncharacterized transporter C323.07c OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPAC323.07c PE=1 SV=1

 Score = 87.4 bits (215), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 75/254 (29%), Positives = 114/254 (44%), Gaps = 31/254 (12%)

Query: 21  IPISVLWIFMDKVLILLGQDPDFFVEACNYAIWLILTLFGYAILRSLSHNLQAQSLILAL 80
           IP++++W+ ++ +LI L QDP        Y    IL   GYA+  +L   LQAQ +   +
Sbjct: 184 IPVALIWLNLEHILIFLHQDPMVAHLCGRYMRVFILAAPGYAVFEALKRYLQAQGIFTPI 243

Query: 81  FLSSCATLCLQILLCWVLV--SKTDFGNTGAELTIGISYWFNEI-------FPST----- 126
               C    L ILL ++LV      FG  GA + +  ++WF  I       F ST     
Sbjct: 244 TYVLCFAAPLNILLNYLLVWHPTIGFGFLGAPVAVATTFWFQSICLILYICFSSTPIPWP 303

Query: 127 -------KEFSFFAHLS---VVMFCLEWCSYEILVLLSGILPNPKL--ETSVLTIWYLYR 174
                  K  S   H S   ++M   EW +YE+  L +G L    L  ++ +LT   L  
Sbjct: 304 GFSRQALKNLSPMLHFSFHGMLMIVTEWAAYEMTSLGAGYLGTAPLASQSILLTSTSLLF 363

Query: 175 NPPLC-----STRVANELGAGNPEPTRLSTCVVIFLAVAEAAIGSVALFCCRNVLAYLFN 229
             P       STRV + +G+G     RL + V   LA+  +      +FC R+V   LF 
Sbjct: 364 QIPFAFAVASSTRVGHLIGSGRANLARLCSRVAYSLALCISIFDGSLIFCFRDVWGSLFT 423

Query: 230 TDKDVVNYVSELVP 243
           +D +V+  V ++ P
Sbjct: 424 SDPEVLAVVKDIFP 437

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	244
255574300	472	TRANSPARENT TESTA 12 protein, putative [	0.995	0.514	0.465	3e-61
224108371	482	predicted protein [Populus trichocarpa]	0.995	0.504	0.465	3e-59
297737740	443	unnamed protein product [Vitis vinifera]	0.995	0.548	0.472	2e-56
225424132	481	PREDICTED: MATE efflux family protein 5	0.995	0.505	0.472	3e-56
147787625	481	hypothetical protein VITISV_022104 [Viti	0.995	0.505	0.469	1e-55
357444623	495	Protein TRANSPARENT TESTA [Medicago trun	0.995	0.490	0.450	3e-55
224065228	479	predicted protein [Populus trichocarpa]	0.995	0.507	0.44	6e-55
297838939	481	predicted protein [Arabidopsis lyrata su	0.995	0.505	0.436	8e-55
255582915	476	TRANSPARENT TESTA 12 protein, putative [	0.995	0.510	0.472	2e-54
356573950	498	PREDICTED: MATE efflux family protein 8-	0.995	0.487	0.429	3e-54

>gi|255574300|ref|XP_002528064.1| TRANSPARENT TESTA 12 protein, putative [Ricinus communis] gi|223532525|gb|EEF34314.1| TRANSPARENT TESTA 12 protein, putative [Ricinus communis]

 Score =  240 bits (613), Expect = 3e-61,   Method: Compositional matrix adjust.
 Identities = 128/275 (46%), Positives = 169/275 (61%), Gaps = 32/275 (11%)

Query: 1   QYQKIGTYTYPAMFFCIAICIPISVLWIFMDKVLILLGQDPDFFVEACNYAIWLILTLFG 60
           QY+K G+Y Y A+   + IC+P S+LWIFMD++LI +G DP   +EAC Y+I LI  LFG
Sbjct: 91  QYKKFGSYLYCAIISLLPICLPASILWIFMDRILISIGLDPKISMEACRYSIGLIPALFG 150

Query: 61  YAILRSLSHNLQAQSLILALFLSSCATLCLQILLCWVLVSKTDFGNTGAELTIGISYWFN 120
           +AIL+SL    Q QSLIL + +SSCATL   I LCW LV K +FG  G  ++IG+SYW N
Sbjct: 151 FAILQSLVRYFQTQSLILPMLISSCATLSAHIPLCWALVFKWEFGAIGGAMSIGLSYWLN 210

Query: 121 -----------------------EIFPSTKEFSFFAHLSVVMFCLEWCSYEILVLLSGIL 157
                                  ++F S  EF  FA  S VM CLEW ++E+L LL+G L
Sbjct: 211 VIFLACYMRWSSSCEKTRVLCWKDVFSSISEFWRFALPSAVMVCLEWWTFELLTLLAGFL 270

Query: 158 PNPKLETSVLTI---------WYLYRNPPLCSTRVANELGAGNPEPTRLSTCVVIFLAVA 208
           PN KLETSVL+I         +  Y      STRV+NELG+GNP+  R    V++ +++ 
Sbjct: 271 PNSKLETSVLSICITTTTVNYYVQYGLGAAASTRVSNELGSGNPQKARSVVRVILAVSIT 330

Query: 209 EAAIGSVALFCCRNVLAYLFNTDKDVVNYVSELVP 243
           EA I S ALFCCR +  Y ++ DK+VVNYV+E+ P
Sbjct: 331 EAVIVSTALFCCRRIFGYAYSNDKEVVNYVTEIAP 365

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224108371|ref|XP_002314825.1| predicted protein [Populus trichocarpa] gi|222863865|gb|EEF00996.1| predicted protein [Populus trichocarpa]

 Score =  234 bits (596), Expect = 3e-59,   Method: Compositional matrix adjust.
 Identities = 128/275 (46%), Positives = 163/275 (59%), Gaps = 32/275 (11%)

Query: 1   QYQKIGTYTYPAMFFCIAICIPISVLWIFMDKVLILLGQDPDFFVEACNYAIWLILTLFG 60
           QY+K+GT TY A+F    +CIP+SV+WI+M K+L   GQDP    EA  + +WL+  LF 
Sbjct: 106 QYKKLGTQTYTAIFCLNLVCIPLSVIWIYMGKILHFTGQDPAISHEAGKFIVWLVPALFA 165

Query: 61  YAILRSLSHNLQAQSLILALFLSSCATLCLQILLCWVLVSKTDFGNTGAELTIGISYWFN 120
           YA L+ L    Q QS I+ + +SSCATLC  I LCW LV K+   N G+ + +GISYW N
Sbjct: 166 YATLQPLVRYFQTQSFIMPMLISSCATLCFHIPLCWALVYKSGLKNVGSAVAMGISYWLN 225

Query: 121 -----------------------EIFPSTKEFSFFAHLSVVMFCLEWCSYEILVLLSGIL 157
                                  E+F    EF  FA  S VM CLEW S+E+L+LLSG L
Sbjct: 226 VIFLGLYIKYSSACAKTRVPIYKELFYGVGEFFRFAIPSAVMICLEWWSFELLILLSGFL 285

Query: 158 PNPKLETSVL-----TIWYLYRNP----PLCSTRVANELGAGNPEPTRLSTCVVIFLAVA 208
           PNP+LETSVL     TI  LY  P       STRVANELGAGNP   RL+    +FLAV+
Sbjct: 286 PNPQLETSVLSVCLMTISTLYGIPFGLGAAASTRVANELGAGNPRAARLAVYAAMFLAVS 345

Query: 209 EAAIGSVALFCCRNVLAYLFNTDKDVVNYVSELVP 243
           E  I + ALF  R V  YLF+ +K+V++YV+ + P
Sbjct: 346 ETIIVTSALFASRRVFGYLFSNEKEVIDYVTTMAP 380

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297737740|emb|CBI26941.3| unnamed protein product [Vitis vinifera]

 Score =  224 bits (572), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 130/275 (47%), Positives = 165/275 (60%), Gaps = 32/275 (11%)

Query: 1   QYQKIGTYTYPAMFFCIAICIPISVLWIFMDKVLILLGQDPDFFVEACNYAIWLILTLFG 60
           QY K+GT TY A+F    +C+P+SV+WI+M K+L  +GQDP    EA  + +WL+  LF 
Sbjct: 64  QYSKLGTQTYTAIFSLFLVCLPLSVIWIYMGKLLTFMGQDPLISYEAGKFTMWLVPALFA 123

Query: 61  YAILRSLSHNLQAQSLILALFLSSCATLCLQILLCWVLVSKTDFGNTGAELTIGISYWFN 120
           YA L+ L    Q QSL + + LSSCA LC  + LCWVLV K+  GN GA L I ISYW N
Sbjct: 124 YATLQPLVRYFQTQSLTMPMLLSSCAALCFHMPLCWVLVFKSGLGNLGAALAISISYWLN 183

Query: 121 -----------------------EIFPSTKEFSFFAHLSVVMFCLEWCSYEILVLLSGIL 157
                                  E+F    EF  FA  S VM CLEW S+E+L+LLSG+L
Sbjct: 184 AIFLVLYMKYSSACEKTRVPVSMEVFQGMGEFFRFAIPSAVMICLEWWSFELLILLSGLL 243

Query: 158 PNPKLETSVL-----TIWYLYRNP----PLCSTRVANELGAGNPEPTRLSTCVVIFLAVA 208
           PNP+LETSVL     TI  LY  P       STRV+NELGAGNP+  RL+   ++FLAV 
Sbjct: 244 PNPELETSVLSVCLNTISTLYTIPYGLGAAGSTRVSNELGAGNPQKARLAVYALMFLAVT 303

Query: 209 EAAIGSVALFCCRNVLAYLFNTDKDVVNYVSELVP 243
           E A+ S  LF  R V  YLF+ +K+VV+YV+ + P
Sbjct: 304 ETALVSTTLFASRRVFGYLFSNEKEVVDYVTNMSP 338

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225424132|ref|XP_002280212.1| PREDICTED: MATE efflux family protein 5 [Vitis vinifera]

 Score =  224 bits (570), Expect = 3e-56,   Method: Compositional matrix adjust.
 Identities = 130/275 (47%), Positives = 165/275 (60%), Gaps = 32/275 (11%)

Query: 1   QYQKIGTYTYPAMFFCIAICIPISVLWIFMDKVLILLGQDPDFFVEACNYAIWLILTLFG 60
           QY K+GT TY A+F    +C+P+SV+WI+M K+L  +GQDP    EA  + +WL+  LF 
Sbjct: 102 QYSKLGTQTYTAIFSLFLVCLPLSVIWIYMGKLLTFMGQDPLISYEAGKFTMWLVPALFA 161

Query: 61  YAILRSLSHNLQAQSLILALFLSSCATLCLQILLCWVLVSKTDFGNTGAELTIGISYWFN 120
           YA L+ L    Q QSL + + LSSCA LC  + LCWVLV K+  GN GA L I ISYW N
Sbjct: 162 YATLQPLVRYFQTQSLTMPMLLSSCAALCFHMPLCWVLVFKSGLGNLGAALAISISYWLN 221

Query: 121 -----------------------EIFPSTKEFSFFAHLSVVMFCLEWCSYEILVLLSGIL 157
                                  E+F    EF  FA  S VM CLEW S+E+L+LLSG+L
Sbjct: 222 AIFLVLYMKYSSACEKTRVPVSMEVFQGMGEFFRFAIPSAVMICLEWWSFELLILLSGLL 281

Query: 158 PNPKLETSVL-----TIWYLYRNP----PLCSTRVANELGAGNPEPTRLSTCVVIFLAVA 208
           PNP+LETSVL     TI  LY  P       STRV+NELGAGNP+  RL+   ++FLAV 
Sbjct: 282 PNPELETSVLSVCLNTISTLYTIPYGLGAAGSTRVSNELGAGNPQKARLAVYALMFLAVT 341

Query: 209 EAAIGSVALFCCRNVLAYLFNTDKDVVNYVSELVP 243
           E A+ S  LF  R V  YLF+ +K+VV+YV+ + P
Sbjct: 342 ETALVSTTLFASRRVFGYLFSNEKEVVDYVTNMSP 376

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147787625|emb|CAN78227.1| hypothetical protein VITISV_022104 [Vitis vinifera]

 Score =  222 bits (565), Expect = 1e-55,   Method: Compositional matrix adjust.
 Identities = 129/275 (46%), Positives = 164/275 (59%), Gaps = 32/275 (11%)

Query: 1   QYQKIGTYTYPAMFFCIAICIPISVLWIFMDKVLILLGQDPDFFVEACNYAIWLILTLFG 60
           QY K+GT TY A+F    +C+P+SV+WI+M K+L  +GQDP    EA  + +WL+  LF 
Sbjct: 102 QYSKLGTQTYTAIFSLFLVCLPLSVIWIYMGKLLTFMGQDPLISYEAGKFTMWLVPALFA 161

Query: 61  YAILRSLSHNLQAQSLILALFLSSCATLCLQILLCWVLVSKTDFGNTGAELTIGISYWFN 120
           YA L+ L    Q QSL + + LSSCA LC  + LCWVLV K+  GN GA L I ISYW N
Sbjct: 162 YATLQPLVRYFQTQSLTMPMLLSSCAALCFHMPLCWVLVFKSGLGNLGAALAISISYWLN 221

Query: 121 -----------------------EIFPSTKEFSFFAHLSVVMFCLEWCSYEILVLLSGIL 157
                                  E+F    EF  FA  S VM CLEW S+E+L+LLSG+L
Sbjct: 222 AIFLVLYMKYSSACEKTRVPVSMEVFQGMGEFFRFAIPSAVMICLEWWSFELLILLSGLL 281

Query: 158 PNPKLETSVL-----TIWYLYRNP----PLCSTRVANELGAGNPEPTRLSTCVVIFLAVA 208
           PNP+LETSVL     TI  LY  P       STRV+NELGAGNP+  RL+   ++FLAV 
Sbjct: 282 PNPELETSVLSVCLNTISTLYTIPYGLGAAGSTRVSNELGAGNPQKARLAVYALMFLAVT 341

Query: 209 EAAIGSVALFCCRNVLAYLFNTDKDVVNYVSELVP 243
           E A+ S   F  R V  YLF+ +K+VV+YV+ + P
Sbjct: 342 ETALVSTTXFASRRVFGYLFSNEKEVVDYVTNMSP 376

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357444623|ref|XP_003592589.1| Protein TRANSPARENT TESTA [Medicago truncatula] gi|355481637|gb|AES62840.1| Protein TRANSPARENT TESTA [Medicago truncatula] gi|388490870|gb|AFK33501.1| unknown [Medicago truncatula]

 Score =  220 bits (561), Expect = 3e-55,   Method: Compositional matrix adjust.
 Identities = 124/275 (45%), Positives = 161/275 (58%), Gaps = 32/275 (11%)

Query: 1   QYQKIGTYTYPAMFFCIAICIPISVLWIFMDKVLILLGQDPDFFVEACNYAIWLILTLFG 60
           QYQ+IG  TY ++F  I +C+P+S +WI ++ +L+  GQDP    EA  + IWL+  LF 
Sbjct: 116 QYQRIGIQTYTSIFSLILVCLPLSFIWINIESILVFTGQDPLIAHEAGRFTIWLLPALFA 175

Query: 61  YAILRSLSHNLQAQSLILALFLSSCATLCLQILLCWVLVSKTDFGNTGAELTIGISYWFN 120
           YAIL+ L    Q QSL++ + LSSC TLC+ I LCW LV KT   N G  + + IS W N
Sbjct: 176 YAILQPLVRYFQIQSLLIPMLLSSCVTLCIHIPLCWALVFKTGLNNIGGAIAMSISIWLN 235

Query: 121 -----------------------EIFPSTKEFSFFAHLSVVMFCLEWCSYEILVLLSGIL 157
                                  E+F    EF  FA  S VM CLEW SYE++VLLSG+L
Sbjct: 236 VIFLGLYMRYSSSCAKTRAPISMELFQGIWEFFRFAIPSAVMVCLEWWSYELIVLLSGLL 295

Query: 158 PNPKLETSVL-----TIWYLYRNP----PLCSTRVANELGAGNPEPTRLSTCVVIFLAVA 208
           PNP+LETSVL     TI  LY  P       STRV+NELGAGNP   R++    + L + 
Sbjct: 296 PNPQLETSVLSVCLNTIATLYTIPFGIGAAASTRVSNELGAGNPFEARVAVLAAMSLGLT 355

Query: 209 EAAIGSVALFCCRNVLAYLFNTDKDVVNYVSELVP 243
           EA+I S  LF CR+V  Y+F++D +VV YV+ L P
Sbjct: 356 EASIVSATLFACRHVYGYIFSSDTEVVKYVTVLAP 390

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224065228|ref|XP_002301727.1| predicted protein [Populus trichocarpa] gi|222843453|gb|EEE81000.1| predicted protein [Populus trichocarpa]

 Score =  219 bits (559), Expect = 6e-55,   Method: Compositional matrix adjust.
 Identities = 121/275 (44%), Positives = 167/275 (60%), Gaps = 32/275 (11%)

Query: 1   QYQKIGTYTYPAMFFCIAICIPISVLWIFMDKVLILLGQDPDFFVEACNYAIWLILTLFG 60
           QY+K G+YTY A+   I + IP+SVLW F D++LI +G D +    AC YAIWLI  LF 
Sbjct: 100 QYKKFGSYTYCAIISLIVVSIPVSVLWTFTDRLLIAVGIDSEISTVACKYAIWLIPALFA 159

Query: 61  YAILRSLSHNLQAQSLILALFLSSCATLCLQILLCWVLVSKTDFGNTGAELTIGISYWFN 120
           +AIL+ L    Q+QSLI  + +S+CA LC  I LCW LV K + GN G  L IG+SYW N
Sbjct: 160 FAILQPLLRYFQSQSLIYPILVSTCAALCFHIPLCWALVYKWELGNIGGALAIGVSYWLN 219

Query: 121 -----------------------EIFPSTKEFSFFAHLSVVMFCLEWCSYEILVLLSGIL 157
                                  +IF S  +F  FA  S VM CLEW +YE+++LL+G+L
Sbjct: 220 VILLVLYMVFSSSCEKTRRLYWDDIFSSINKFFRFAFPSAVMICLEWWTYELVILLAGLL 279

Query: 158 PNPKLETSVLTI---------WYLYRNPPLCSTRVANELGAGNPEPTRLSTCVVIFLAVA 208
           P+PKL+TSVL+I         +  Y      STRV+NELGAGNP+  +++  VV+ +++ 
Sbjct: 280 PDPKLQTSVLSICLATATLHYYVQYGIGAAGSTRVSNELGAGNPQAAQVAVQVVLIMSLV 339

Query: 209 EAAIGSVALFCCRNVLAYLFNTDKDVVNYVSELVP 243
           E    S+ LF CR++  Y F+++K VV+YV+EL P
Sbjct: 340 EVVTVSLILFFCRHIFGYAFSSEKRVVDYVAELAP 374

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297838939|ref|XP_002887351.1| predicted protein [Arabidopsis lyrata subsp. lyrata] gi|297333192|gb|EFH63610.1| predicted protein [Arabidopsis lyrata subsp. lyrata]

 Score =  219 bits (558), Expect = 8e-55,   Method: Compositional matrix adjust.
 Identities = 120/275 (43%), Positives = 159/275 (57%), Gaps = 32/275 (11%)

Query: 1   QYQKIGTYTYPAMFFCIAICIPISVLWIFMDKVLILLGQDPDFFVEACNYAIWLILTLFG 60
           Q++K+G +TY  +     +CIP+SVLW +M  +L L+GQDP    +A  +A WLI  LFG
Sbjct: 100 QFEKLGVHTYTGIVSLFLVCIPLSVLWSYMGDILSLIGQDPMVAQQAGKFATWLIPALFG 159

Query: 61  YAILRSLSHNLQAQSLILALFLSSCATLCLQILLCWVLVSKTDFGNTGAELTIGISYWFN 120
           YAIL+ L    QAQSLIL L +SS ++LC+ ++LCW LV K   G+ GA + IG+SYW N
Sbjct: 160 YAILQPLVRFFQAQSLILPLIMSSVSSLCVHVVLCWSLVFKFGLGSVGAAIAIGVSYWLN 219

Query: 121 EI-----------------------FPSTKEFSFFAHLSVVMFCLEWCSYEILVLLSGIL 157
            I                       F    EF  F   S  M CLEW S+E LVLLSGIL
Sbjct: 220 VIVLGLYMTFSSSCSKSRATISMSLFEGMGEFFRFGIPSASMICLEWWSFEFLVLLSGIL 279

Query: 158 PNPKLETSVLTI-----WYLYRNP----PLCSTRVANELGAGNPEPTRLSTCVVIFLAVA 208
           PNPKLE SVL++       LY+ P       STRVANELGAGNP+  R +   V+ +   
Sbjct: 280 PNPKLEASVLSVCLSTQASLYQIPESLGAAASTRVANELGAGNPKQARKAVYTVMVITSV 339

Query: 209 EAAIGSVALFCCRNVLAYLFNTDKDVVNYVSELVP 243
           E+ +    +F  RNV  YLF+++ +VV+YV  + P
Sbjct: 340 ESIMVGAIVFGARNVFGYLFSSETEVVDYVKTMAP 374

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255582915|ref|XP_002532229.1| TRANSPARENT TESTA 12 protein, putative [Ricinus communis] gi|223528086|gb|EEF30160.1| TRANSPARENT TESTA 12 protein, putative [Ricinus communis]

 Score =  218 bits (555), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 130/275 (47%), Positives = 165/275 (60%), Gaps = 32/275 (11%)

Query: 1   QYQKIGTYTYPAMFFCIAICIPISVLWIFMDKVLILLGQDPDFFVEACNYAIWLILTLFG 60
           QY+K+G  T  A+F  I +CIP+S++W FM K+L+ +GQDP    EA  Y +WL+ +LF 
Sbjct: 105 QYKKLGIQTQTAIFCLILVCIPLSIIWTFMGKLLVSIGQDPAISHEAGKYMMWLVPSLFA 164

Query: 61  YAILRSLSHNLQAQSLILALFLSSCATLCLQILLCWVLVSKTDFGNTGAELTIGISYWFN 120
           YA L+ L    Q QSLI  + LSSCATLC  + LCWVL   +   N GA L + IS W N
Sbjct: 165 YAALQPLVRYFQMQSLITPMLLSSCATLCFHMPLCWVLTFHSGLENLGAALAMDISIWLN 224

Query: 121 -----------------------EIFPSTKEFSFFAHLSVVMFCLEWCSYEILVLLSGIL 157
                                  E+F    EF  FA  S VM CLEW S+E+LVLLSG+L
Sbjct: 225 VIFLGLYMSYSSACAKTRAPISVELFHGIGEFFRFAIFSAVMICLEWWSFELLVLLSGLL 284

Query: 158 PNPKLETSVL-----TIWYLYRNP----PLCSTRVANELGAGNPEPTRLSTCVVIFLAVA 208
           PNP+LETSVL     TI  LY  P       STRV+NELGAG P+  R++   V+FLAV 
Sbjct: 285 PNPQLETSVLSVCLQTISTLYSIPYGFGAAVSTRVSNELGAGKPQAARIAVFAVLFLAVV 344

Query: 209 EAAIGSVALFCCRNVLAYLFNTDKDVVNYVSELVP 243
           E AI S ALF CR+V  YLF+ +K+VV+YV+ + P
Sbjct: 345 ETAIVSSALFACRHVFGYLFSNEKEVVDYVTTMSP 379

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356573950|ref|XP_003555117.1| PREDICTED: MATE efflux family protein 8-like [Glycine max]

 Score =  217 bits (553), Expect = 3e-54,   Method: Compositional matrix adjust.
 Identities = 118/275 (42%), Positives = 164/275 (59%), Gaps = 32/275 (11%)

Query: 1   QYQKIGTYTYPAMFFCIAICIPISVLWIFMDKVLILLGQDPDFFVEACNYAIWLILTLFG 60
           +Y+K G YT+ A+     +C+PIS++WIF DK+L+L  QDP+    A  Y I+LI  LFG
Sbjct: 122 EYRKFGNYTWCAIVTLTLVCLPISLVWIFTDKILLLFSQDPEISHAAREYCIYLIPALFG 181

Query: 61  YAILRSLSHNLQAQSLILALFLSSCATLCLQILLCWVLVSKTDFGNTGAELTIGISYWFN 120
           +A+L++L+   Q QS+I  +  SS   LCL + +CW LV K   G+ GA L IG+SYW N
Sbjct: 182 HAVLQALTRYFQTQSMIFPMVFSSITALCLHVPICWGLVFKLGLGHVGAALAIGVSYWLN 241

Query: 121 EIF-----------PSTK------------EFSFFAHLSVVMFCLEWCSYEILVLLSGIL 157
            ++             TK            EF   A  S +MFC EW S+E+L LL+GIL
Sbjct: 242 VVWLAIYMIYSPACQKTKIVFSSNALLSIPEFLKLAIPSGLMFCFEWWSFEVLTLLAGIL 301

Query: 158 PNPKLETSVLTI---------WYLYRNPPLCSTRVANELGAGNPEPTRLSTCVVIFLAVA 208
           PNP+LET+VL+I         +  Y      STRV+NELGAGNP+  + +  VV+ L VA
Sbjct: 302 PNPQLETAVLSICLNTTTLHYFIPYAVGASASTRVSNELGAGNPKTAKGAVRVVVILGVA 361

Query: 209 EAAIGSVALFCCRNVLAYLFNTDKDVVNYVSELVP 243
           EAAI S     CR+VL Y ++ DK+V++YV+E+ P
Sbjct: 362 EAAIVSTVFISCRHVLGYAYSNDKEVIDYVAEMAP 396

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	244
TAIR|locus:2033334	482	AT1G66760 "AT1G66760" [Arabido	0.504	0.255	0.487	1.9e-54
TAIR|locus:2033309	485	AT1G66780 "AT1G66780" [Arabido	0.491	0.247	0.491	2.4e-53
TAIR|locus:2026311	485	AT1G71140 "AT1G71140" [Arabido	0.491	0.247	0.483	6.2e-53
TAIR|locus:2037858	481	AT1G15170 "AT1G15170" [Arabido	0.495	0.251	0.463	3.4e-52
TAIR|locus:2037848	487	AT1G15160 "AT1G15160" [Arabido	0.532	0.266	0.424	2e-51
TAIR|locus:2037723	487	AT1G15150 "AT1G15150" [Arabido	0.5	0.250	0.434	1.6e-50
TAIR|locus:2027834	476	AT1G73700 "AT1G73700" [Arabido	0.508	0.260	0.395	1.1e-44
TAIR|locus:2156737	486	AT5G52450 "AT5G52450" [Arabido	0.438	0.220	0.474	3.1e-39
TAIR|locus:2010926	502	AT1G64820 [Arabidopsis thalian	0.491	0.239	0.475	1.1e-29
TAIR|locus:2089955	506	AT3G21690 "AT3G21690" [Arabido	0.471	0.227	0.380	5.8e-28

TAIR|locus:2033334 AT1G66760 "AT1G66760" [Arabidopsis thaliana (taxid:3702)]

 Score = 330 (121.2 bits), Expect = 1.9e-54, Sum P(2) = 1.9e-54
 Identities = 60/123 (48%), Positives = 84/123 (68%)

Query:     1 QYQKIGTYTYPAMFFCIAICIPISVLWIFMDKVLILLGQDPDFFVEACNYAIWLILTLFG 60
             QY K+G+YT+ ++ F + I +PIS+LW+FM+++L+LL QDP     A  Y +WL+  LFG
Sbjct:   102 QYHKLGSYTFTSIVFLLIISVPISILWMFMNQILLLLHQDPQIAELAGVYCLWLVPALFG 161

Query:    61 YAILRSLSHNLQAQSLILALFLSSCATLCLQILLCWVLVSKTDFGNTGAELTIGISYWFN 120
             Y++L SL    Q+QSLI  + LSS A L   + LCW++V K DFG  GA  +IGISYW N
Sbjct:   162 YSVLESLVRYFQSQSLIYPMVLSSLAALSFHVPLCWLMVHKFDFGAKGAAASIGISYWLN 221

Query:   121 EIF 123
              +F
Sbjct:   222 AVF 224

GO:0005215 "transporter activity" evidence=ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0006855 "drug transmembrane transport" evidence=IEA

GO:0015238 "drug transmembrane transporter activity" evidence=IEA

GO:0015297 "antiporter activity" evidence=IEA;ISS

GO:0016020 "membrane" evidence=IEA;ISS

GO:0055085 "transmembrane transport" evidence=IEA

GO:0009611 "response to wounding" evidence=IEP;RCA

GO:0009620 "response to fungus" evidence=RCA

GO:0009695 "jasmonic acid biosynthetic process" evidence=RCA

GO:0009753 "response to jasmonic acid stimulus" evidence=RCA

TAIR|locus:2033309 AT1G66780 "AT1G66780" [Arabidopsis thaliana (taxid:3702)]

 Score = 314 (115.6 bits), Expect = 2.4e-53, Sum P(2) = 2.4e-53
 Identities = 59/120 (49%), Positives = 78/120 (65%)

Query:     1 QYQKIGTYTYPAMFFCIAICIPISVLWIFMDKVLILLGQDPDFFVEACNYAIWLILTLFG 60
             Q++ I  YTY +M   + +C PIS+LW+FMDK+L L  QDP     AC Y+IWLI  LFG
Sbjct:   109 QFRNISAYTYGSMLCLLLVCFPISLLWVFMDKLLELFHQDPLISQLACRYSIWLIPALFG 168

Query:    61 YAILRSLSHNLQAQSLILALFLSSCATLCLQILLCWVLVSKTDFGNTGAELTIGISYWFN 120
             Y++L+S++   Q+Q L+L LFLSS   L   +   W+LV K  FG  GA L+IG SYW N
Sbjct:   169 YSVLQSMTRFFQSQGLVLPLFLSSLGALFFHVPFSWLLVYKLRFGIVGAALSIGFSYWLN 228

GO:0005215 "transporter activity" evidence=ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0006855 "drug transmembrane transport" evidence=IEA

GO:0015238 "drug transmembrane transporter activity" evidence=IEA

GO:0015297 "antiporter activity" evidence=IEA;ISS

GO:0016020 "membrane" evidence=IEA;ISS

GO:0055085 "transmembrane transport" evidence=IEA

GO:0006857 "oligopeptide transport" evidence=RCA

TAIR|locus:2026311 AT1G71140 "AT1G71140" [Arabidopsis thaliana (taxid:3702)]

 Score = 309 (113.8 bits), Expect = 6.2e-53, Sum P(2) = 6.2e-53
 Identities = 58/120 (48%), Positives = 79/120 (65%)

Query:     1 QYQKIGTYTYPAMFFCIAICIPISVLWIFMDKVLILLGQDPDFFVEACNYAIWLILTLFG 60
             QY+K+G +TY  +     +CIP+S+LW ++  +L L+GQD     EA  +A WLI  LFG
Sbjct:   100 QYEKLGVHTYTGIVSLFLVCIPLSLLWTYIGDILSLIGQDAMVAQEAGKFATWLIPALFG 159

Query:    61 YAILRSLSHNLQAQSLILALFLSSCATLCLQILLCWVLVSKTDFGNTGAELTIGISYWFN 120
             YA L+ L    QAQSLIL L +SS ++LC+ I+LCW LV K   G+ GA + IG+SYW N
Sbjct:   160 YATLQPLVRFFQAQSLILPLVMSSVSSLCIHIVLCWSLVFKFGLGSLGAAIAIGVSYWLN 219

GO:0005215 "transporter activity" evidence=ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0006855 "drug transmembrane transport" evidence=IEA

GO:0015238 "drug transmembrane transporter activity" evidence=IEA

GO:0015297 "antiporter activity" evidence=IEA;ISS

GO:0016020 "membrane" evidence=IEA;ISS

GO:0055085 "transmembrane transport" evidence=IEA

GO:0005774 "vacuolar membrane" evidence=IDA

TAIR|locus:2037858 AT1G15170 "AT1G15170" [Arabidopsis thaliana (taxid:3702)]

 Score = 299 (110.3 bits), Expect = 3.4e-52, Sum P(2) = 3.4e-52
 Identities = 57/123 (46%), Positives = 78/123 (63%)

Query:     2 YQKIGTYTYPAMFFCIA-ICIPISVLWIFMDKVLILLGQDPDFFVEACNYAIWLILTLFG 60
             Y+K+G  TY AMF C+A +C+P+S++W  M+K+L++LGQDP    EA  YA WLI  LF 
Sbjct:   109 YRKLGVQTYTAMF-CLALVCLPLSLIWFNMEKLLLILGQDPSIAHEAGKYATWLIPGLFA 167

Query:    61 YAILRSLSHNLQAQSLILALFLSSCATLCLQILLCWVLVSKTDFGNTGAELTIGISYWFN 120
             YA+L+ L+   Q QSLI  L ++S    C+ + LCW LV  +  GN G  L I +S W  
Sbjct:   168 YAVLQPLTRYFQNQSLITPLLITSYVVFCIHVPLCWFLVYNSGLGNLGGALAISLSNWLY 227

Query:   121 EIF 123
              IF
Sbjct:   228 AIF 230

GO:0005215 "transporter activity" evidence=ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0006855 "drug transmembrane transport" evidence=IEA

GO:0015238 "drug transmembrane transporter activity" evidence=IEA

GO:0015297 "antiporter activity" evidence=IEA;ISS

GO:0016020 "membrane" evidence=IEA;ISS

GO:0055085 "transmembrane transport" evidence=IEA

GO:0009507 "chloroplast" evidence=IDA

TAIR|locus:2037848 AT1G15160 "AT1G15160" [Arabidopsis thaliana (taxid:3702)]

 Score = 301 (111.0 bits), Expect = 2.0e-51, Sum P(2) = 2.0e-51
 Identities = 56/132 (42%), Positives = 81/132 (61%)

Query:     2 YQKIGTYTYPAMFFCIAICIPISVLWIFMDKVLILLGQDPDFFVEACNYAIWLILTLFGY 61
             Y+K+G   Y AMF    +C+P+S+LW  M K+L++LGQDP    EA  +A WLI  LF Y
Sbjct:   106 YRKLGVQAYTAMFCLTLVCLPLSLLWFNMGKLLVILGQDPSIAHEAGRFAAWLIPGLFAY 165

Query:    62 AILRSLSHNLQAQSLILALFLSSCATLCLQILLCWVLVSKTDFGNTGAELTIGISYWFNE 121
             A+L+ L+   + QSLI  L ++SC   CL + LCW+LV K+   + G  L + +SYW   
Sbjct:   166 AVLQPLTRYFKNQSLITPLLITSCVVFCLHVPLCWLLVYKSGLDHIGGALALSLSYWLYA 225

Query:   122 IFPSTKEFSFFA 133
             IF  +  F +F+
Sbjct:   226 IFLGS--FMYFS 235

GO:0005215 "transporter activity" evidence=ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0006855 "drug transmembrane transport" evidence=IEA

GO:0015238 "drug transmembrane transporter activity" evidence=IEA

GO:0015297 "antiporter activity" evidence=IEA;ISS

GO:0016020 "membrane" evidence=IEA;ISS

GO:0055085 "transmembrane transport" evidence=IEA

TAIR|locus:2037723 AT1G15150 "AT1G15150" [Arabidopsis thaliana (taxid:3702)]

 Score = 290 (107.1 bits), Expect = 1.6e-50, Sum P(2) = 1.6e-50
 Identities = 53/122 (43%), Positives = 75/122 (61%)

Query:     2 YQKIGTYTYPAMFFCIAICIPISVLWIFMDKVLILLGQDPDFFVEACNYAIWLILTLFGY 61
             Y+K+G   Y AMF    +C+P+S+LW  M K++++LGQDP    EA  YA WLI  LF Y
Sbjct:   106 YRKLGVQAYTAMFCLTLVCLPLSLLWFNMGKLIVILGQDPAIAHEAGRYAAWLIPGLFAY 165

Query:    62 AILRSLSHNLQAQSLILALFLSSCATLCLQILLCWVLVSKTDFGNTGAELTIGISYWFNE 121
             A+L+ L    + QSLI  L ++S    C+ + LCW+LV K+  G+ G  L + +SYW   
Sbjct:   166 AVLQPLIRYFKNQSLITPLLVTSSVVFCIHVPLCWLLVYKSGLGHIGGALALSLSYWLYA 225

Query:   122 IF 123
             IF
Sbjct:   226 IF 227

GO:0005215 "transporter activity" evidence=ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0006855 "drug transmembrane transport" evidence=IEA

GO:0015238 "drug transmembrane transporter activity" evidence=IEA

GO:0015297 "antiporter activity" evidence=IEA;ISS

GO:0016020 "membrane" evidence=IEA;ISS

GO:0055085 "transmembrane transport" evidence=IEA

TAIR|locus:2027834 AT1G73700 "AT1G73700" [Arabidopsis thaliana (taxid:3702)]

 Score = 257 (95.5 bits), Expect = 1.1e-44, Sum P(2) = 1.1e-44
 Identities = 49/124 (39%), Positives = 76/124 (61%)

Query:     2 YQKIGTYTYPAMFFCIAICIPISVLWIFMDKVLILLGQDPDFFVEACNYAIWLILTLFGY 61
             Y K+G     AMF  + + +P+S++W   +++L+L+ QD      A +YA ++I +LF Y
Sbjct:    99 YGKLGIQMQRAMFVLLILSVPLSIIWANTEQILVLVHQDKSIASVAGSYAKYMIPSLFAY 158

Query:    62 AILRSLSHNLQAQSLILALFLSSCATLCLQILLCWVLVSKTDFGNTGAELTIGISYWFNE 121
              +L+ ++  LQAQ+ +  +F+ S  T CL +LLCW+ V KT  G  GA L I +SYWFN 
Sbjct:   159 GLLQCINRFLQAQNNVFPVFVCSGITTCLHLLLCWLFVLKTGLGYRGAALAISVSYWFNV 218

Query:   122 IFPS 125
             I  S
Sbjct:   219 ILLS 222

GO:0005215 "transporter activity" evidence=ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0006855 "drug transmembrane transport" evidence=IEA

GO:0015238 "drug transmembrane transporter activity" evidence=IEA

GO:0015297 "antiporter activity" evidence=IEA;ISS

GO:0016020 "membrane" evidence=IEA;ISS

GO:0055085 "transmembrane transport" evidence=IEA

TAIR|locus:2156737 AT5G52450 "AT5G52450" [Arabidopsis thaliana (taxid:3702)]

 Score = 239 (89.2 bits), Expect = 3.1e-39, Sum P(2) = 3.1e-39
 Identities = 56/118 (47%), Positives = 80/118 (67%)

Query:   136 SVVMFCLEWCSYEILVLLSGILPNPKLETSVL--------TIWYL-YRNPPLCSTRVANE 186
             S +M CLE  S+E+LVLLSG+LPNP LETSVL        T+W + +      STR++NE
Sbjct:   258 SALMVCLEMWSFELLVLLSGLLPNPVLETSVLSICLNTSGTMWMIPFGLSGAASTRISNE 317

Query:   187 LGAGNPEPTRLSTCVVIFLAVAEA-AIGSVALFCCRNVLAYLFNTDKDVVNYVSELVP 243
             LGAGNP+  +L+  VVI +AVAE+  IGSV L   RN+    ++++ +VV+YV+ ++P
Sbjct:   318 LGAGNPKVAKLAVRVVICIAVAESIVIGSV-LILIRNIWGLAYSSELEVVSYVASMMP 374

GO:0005215 "transporter activity" evidence=ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0006855 "drug transmembrane transport" evidence=IEA

GO:0015238 "drug transmembrane transporter activity" evidence=IEA

GO:0015297 "antiporter activity" evidence=IEA

GO:0016020 "membrane" evidence=IEA;ISS

GO:0055085 "transmembrane transport" evidence=IEA

GO:0009624 "response to nematode" evidence=IEP

GO:0005774 "vacuolar membrane" evidence=IDA

TAIR|locus:2010926 AT1G64820 [Arabidopsis thaliana (taxid:3702)]

 Score = 311 (114.5 bits), Expect = 1.1e-29, Sum P(2) = 1.1e-29
 Identities = 57/120 (47%), Positives = 75/120 (62%)

Query:     1 QYQKIGTYTYPAMFFCIAICIPISVLWIFMDKVLILLGQDPDFFVEACNYAIWLILTLFG 60
             Q+ KIG YTY +M   +  C  IS++W FMDK+L +  QDP     AC Y+IWLI  LFG
Sbjct:   103 QFGKIGAYTYSSMLCLLVFCFSISIVWFFMDKLLEIFHQDPLISQLACRYSIWLIPALFG 162

Query:    61 YAILRSLSHNLQAQSLILALFLSSCATLCLQILLCWVLVSKTDFGNTGAELTIGISYWFN 120
             + +L+ ++   Q+Q + L LF+SS   LC  I  CW+LV K  FG  GA L+IG SYW N
Sbjct:   163 FTLLQPMTRYFQSQGITLPLFVSSLGALCFHIPFCWLLVYKLKFGIVGAALSIGFSYWLN 222

GO:0005886 "plasma membrane" evidence=ISM

GO:0006855 "drug transmembrane transport" evidence=IEA;ISS

GO:0015238 "drug transmembrane transporter activity" evidence=IEA

GO:0015297 "antiporter activity" evidence=IEA;ISS

GO:0016020 "membrane" evidence=IEA;ISS

GO:0055085 "transmembrane transport" evidence=IEA

TAIR|locus:2089955 AT3G21690 "AT3G21690" [Arabidopsis thaliana (taxid:3702)]

 Score = 190 (71.9 bits), Expect = 5.8e-28, Sum P(2) = 5.8e-28
 Identities = 48/126 (38%), Positives = 70/126 (55%)

Query:   129 FSFF--AHLSVVMFCLEWCSYEILVLLSGILPNPKLETSVLTI------WYLYRNPPL-- 178
             +SFF  +  S VM CLE   ++ILVLL+G+L NP+L    L+I      W    +     
Sbjct:   275 WSFFKLSAASAVMLCLETWYFQILVLLAGLLENPELALDSLSICMTISGWVFMISVGFNA 334

Query:   179 -CSTRVANELGAGNPEPTRLSTCVVIFLAVAEAAIGSVALFCCRNVLAYLFNTDKDVVNY 237
               S RV+NELGAGNP+    S  +V   ++    I ++ +  CR+VL+Y F   K+V + 
Sbjct:   335 AISVRVSNELGAGNPKSAAFSVIIVNIYSLITCVILAIVILACRDVLSYAFTEGKEVSDA 394

Query:   238 VSELVP 243
             VS+L P
Sbjct:   395 VSDLCP 400

GO:0005215 "transporter activity" evidence=ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0006855 "drug transmembrane transport" evidence=IEA

GO:0015238 "drug transmembrane transporter activity" evidence=IEA

GO:0015297 "antiporter activity" evidence=IEA;ISS

GO:0016020 "membrane" evidence=IEA;ISS

GO:0055085 "transmembrane transport" evidence=IEA

GO:0005774 "vacuolar membrane" evidence=IDA

GO:0009610 "response to symbiotic fungus" evidence=RCA

GO:0015824 "proline transport" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	244
cd13132	436	cd13132, MATE_eukaryotic, Eukaryotic members of th	2e-57
TIGR00797	342	TIGR00797, matE, putative efflux protein, MATE fam	5e-15
COG0534	455	COG0534, NorM, Na+-driven multidrug efflux pump [D	3e-08
cd13131	435	cd13131, MATE_NorM_like, Subfamily of the multidru	4e-05
pfam01554	161	pfam01554, MatE, MatE	1e-04
pfam01554	161	pfam01554, MatE, MatE	0.001
cd13138	431	cd13138, MATE_yoeA_like, Subfamily of the multidru	0.004

>gnl|CDD|240537 cd13132, MATE_eukaryotic, Eukaryotic members of the multidrug and toxic compound extrusion (MATE) family

 Score =  188 bits (479), Expect = 2e-57
 Identities = 98/275 (35%), Positives = 139/275 (50%), Gaps = 33/275 (12%)

Query: 1   QYQKIGTYTYPAMFFCIAICIPISVLWIFMDKVLILLGQDPDFFVEACNYAIWLILTLFG 60
            Y+ +G Y   A+   +  C+PIS+LW+  + +L+LLGQDP+    A  Y  WLI  LF 
Sbjct: 75  NYKLVGVYLQRALVILLLCCVPISLLWLNTEPILLLLGQDPEIARLAGEYLRWLIPGLFA 134

Query: 61  YAILRSLSHNLQAQSLILALFLSSCATLCLQILLCWVLVSKTDFGNTGAELTIGISYWFN 120
           YA+   L   LQAQ ++L L   S   L L ILL ++LV     G  GA L   ISYW  
Sbjct: 135 YALFEPLKRYLQAQGIVLPLVYISLVALLLNILLNYLLVFVLGLGFIGAALATSISYWLI 194

Query: 121 -----------------------EIFPSTKEFSFFAHLSVVMFCLEWCSYEILVLLSGIL 157
                                  E F     F   A  S +M CLEW ++EILVLL+G+L
Sbjct: 195 VVLLLLYIFFSKGHKATWGGFSREAFRGWGPFLKLAIPSALMLCLEWWAFEILVLLAGLL 254

Query: 158 PNPKLETSVLTIWY----LYRNPPL-----CSTRVANELGAGNPEPTRLSTCVVIFLAVA 208
           P   +  +  +I      L    PL      S RV NELGAGNP+  +L+  V + L++ 
Sbjct: 255 P-GTVALAAQSICLTTTSLLYMIPLGISIAASVRVGNELGAGNPKRAKLAAIVALILSLV 313

Query: 209 EAAIGSVALFCCRNVLAYLFNTDKDVVNYVSELVP 243
              + ++ L   R+V AYLF +D++V+  V++L+P
Sbjct: 314 IGVVVAILLLVLRDVWAYLFTSDEEVIALVADLLP 348

The integral membrane proteins from the MATE family are involved in exporting metabolites across the cell membrane and are responsible for multidrug resistance (MDR) in many bacteria and animals. MATE has also been identified as a large multigene family in plants, where the proteins are linked to disease resistance. A number of family members are involved in the synthesis of peptidoglycan components in bacteria. This subfamily, which is restricted to eukaryotes, contains vertebrate solute transporters responsible for secretion of cationic drugs across the brush border membranes, yeast proteins located in the vacuole membrane, and plant proteins involved in disease resistance and iron homeostatis under osmotic stress. Length = 436

>gnl|CDD|233130 TIGR00797, matE, putative efflux protein, MATE family

 Score = 72.7 bits (179), Expect = 5e-15
 Identities = 55/280 (19%), Positives = 102/280 (36%), Gaps = 41/280 (14%)

Query: 1   QYQKIGTYTYPAMFFCIAICIPISVLWIFMDK-VLILLGQDPDFFVEACNYAIWLILTLF 59
            YQ++G     ++   + + +P+ ++  F    +L L+G D +    A +Y   LIL + 
Sbjct: 64  NYQRLGRQAQQSLLLALLLGLPVLLVGYFFIDPLLSLMGADGEVAELAQDYLRILILGIP 123

Query: 60  GYAILRSLSHNLQAQSLILALFLSSCATLCLQILLCWVLVSKTDFGN---TGAELTIGIS 116
            Y +   L   L+ Q         +     + I+L ++L+    FG     GA L   IS
Sbjct: 124 AYLLNFVLRGFLRGQGDTKTPMYITLIGNVINIILNYILIF-GKFGFLGIVGAALATVIS 182

Query: 117 YWFNEIF--------PSTKEFSFFAH---------------LSVVMFCLEWCSYEILVLL 153
           YW   +                                          LE  S+ +L LL
Sbjct: 183 YWLMFLLLLYYIKKAKKIGLKWEGLLKPDWEVLKRLLKLGLPIAFRVILESLSFALLALL 242

Query: 154 SG-----ILPNPKLETSVLTIWYLYRNPPL-----CSTRVANELGAGNPEPTRLSTCVVI 203
                   L   ++  +V ++ ++   P        S  V   LGAG+P+  +    V +
Sbjct: 243 VARLGSIALAAHQIALNVESLLFM---PAFGFGIAVSILVGQALGAGDPKRAKEVARVAL 299

Query: 204 FLAVAEAAIGSVALFCCRNVLAYLFNTDKDVVNYVSELVP 243
            L++    + ++ L   R  +A LF  D +V+   +  + 
Sbjct: 300 KLSLLLGLVLAIILILFREFIARLFTNDPEVLELAAIYLI 339

The Multi Antimicrobial Extrusion (MATE) Family (TC 2.A.66) The MATE family consists of probable efflux proteins including a functionally characterized multi drug efflux system from Vibrio parahaemolyticus, a putative ethionine resistance protein of Saccharomyces cerevisiae, and the functionally uncharacterized DNA damage-inducible protein F (DinF) of E. coli. These proteins have 12 probable TMS [Transport and binding proteins, Other]. Length = 342

>gnl|CDD|223608 COG0534, NorM, Na+-driven multidrug efflux pump [Defense mechanisms]

 Score = 53.0 bits (128), Expect = 3e-08
 Identities = 48/266 (18%), Positives = 86/266 (32%), Gaps = 34/266 (12%)

Query: 12  AMFFCIAICIPISVL-WIFMDKVLILLGQDPDFFVEACNYAIWLILTLFGYAILRSLSHN 70
            +   + + + +++L   F + +L LLG   +    A  Y   ++L      +   LS  
Sbjct: 99  GLLLALLLGLLLAILLLFFAEPLLRLLGAPAEVLELAAEYLRIILLGAPFALLSFVLSGI 158

Query: 71  LQAQSLILALFLSSCATLCLQILLCWVLV--SKTDFGNTGAELTIGISYWFNEIF----- 123
           L+                 L I+L ++L+       G  GA L   I+ W   +      
Sbjct: 159 LRGLGDTKTPMYILLLGNLLNIVLNYLLIFGLFGGLGVAGAALATVIARWIGALLLLIYL 218

Query: 124 -----PSTKEFSFFAHL--------------SVVMFCLEWCSYEILVLLSGILPNPKL-- 162
                  +                         +    E   + +L L    L    L  
Sbjct: 219 LRKKRLLSLFKKKLLKPDRKLLKEILRLGLPIFLESLSESLGFLLLTLFVARLGTVALAA 278

Query: 163 ETSVLTIWYLYRNPPL-----CSTRVANELGAGNPEPTRLSTCVVIFLAVAEAAIGSVAL 217
               L I      PP       +  V   LGAGN +  R +  + + L++  A + ++ L
Sbjct: 279 YGIALRIASFIFMPPFGIAQAVTILVGQNLGAGNYKRARRAARLALKLSLLIALLIALLL 338

Query: 218 FCCRNVLAYLFNTDKDVVNYVSELVP 243
              R  +  LF TD +V+     L+ 
Sbjct: 339 LLFREPIISLFTTDPEVIALAVILLL 364

Length = 455

>gnl|CDD|240536 cd13131, MATE_NorM_like, Subfamily of the multidrug and toxic compound extrusion (MATE)-like proteins similar to Vibrio cholerae NorM

 Score = 44.0 bits (105), Expect = 4e-05
 Identities = 31/130 (23%), Positives = 51/130 (39%), Gaps = 18/130 (13%)

Query: 1   QYQKIGTYTYPAMFFCIAICIPISVLWIFMDKVLILLGQDPDFFVEACNYAIWL---ILT 57
             ++I       ++  + + +P+ +L      +L L+GQ+P+    A  Y + L   I  
Sbjct: 74  DRRRIRRAVRQGLWLALLLSLPLMLLLWLAPPILPLMGQEPEVAAIARGYLLALAWGIPP 133

Query: 58  LFGYAILRSLSHNLQAQSLILALFLSSCATLCLQILLCWVLVSKTDFGN--------TGA 109
              + +LRS    L A        + +   L L I L +VL+    FG          GA
Sbjct: 134 ALLFQVLRSF---LDALGRTRPAMVITLLALVLNIPLNYVLI----FGKFGLPALGGAGA 186

Query: 110 ELTIGISYWF 119
            L   I YW 
Sbjct: 187 GLATAIVYWL 196

The integral membrane proteins from the MATE family are involved in exporting metabolites across the cell membrane and are responsible for multidrug resistance (MDR) in many bacteria and animals. This subfamily includes Vibrio cholerae NorM and functions most likely as a multidrug efflux pump, removing xenobiotics from the interior of the cell. The pump utilizes a cation gradient across the membrane to facilitate the export process. NorM appears to bind monovalent cations in an outward-facing conformation and may subsequently cycle through an inward-facing and outward-facing conformation to capture and release its substrate. Length = 435

>gnl|CDD|190033 pfam01554, MatE, MatE

 Score = 41.0 bits (97), Expect = 1e-04
 Identities = 23/115 (20%), Positives = 45/115 (39%), Gaps = 7/115 (6%)

Query: 136 SVVMFCLEWCSYEILVLLSGILPNPKLE--TSVLTIWYLYRNPPL-----CSTRVANELG 188
            ++   L+     I  L  G L    L   +   +I  L     L      +T V   LG
Sbjct: 2   IILENLLQSLYSLIDTLFVGHLGAVALAAVSIANSIASLIFMFLLGLSTALTTLVGQALG 61

Query: 189 AGNPEPTRLSTCVVIFLAVAEAAIGSVALFCCRNVLAYLFNTDKDVVNYVSELVP 243
           AGN +   ++    + L++  +   ++ +   R  +  LF  D++V+   S+ + 
Sbjct: 62  AGNFKRAGVALRQGLILSLLISLPIALLIILFREPILSLFTQDEEVLELASKYLR 116

The MatE domain. Length = 161

>gnl|CDD|190033 pfam01554, MatE, MatE

 Score = 38.3 bits (90), Expect = 0.001
 Identities = 21/98 (21%), Positives = 41/98 (41%), Gaps = 1/98 (1%)

Query: 1   QYQKIGTYTYPAMFFCIAICIPISVL-WIFMDKVLILLGQDPDFFVEACNYAIWLILTLF 59
            +++ G      +   + I +PI++L  +F + +L L  QD +    A  Y   L L + 
Sbjct: 64  NFKRAGVALRQGLILSLLISLPIALLIILFREPILSLFTQDEEVLELASKYLRILALGIP 123

Query: 60  GYAILRSLSHNLQAQSLILALFLSSCATLCLQILLCWV 97
             ++   LS  L+           +  +L L I L ++
Sbjct: 124 FLSLQFVLSGFLRGAGDTKPPLYINLISLLLNIPLNYL 161

The MatE domain. Length = 161

>gnl|CDD|240543 cd13138, MATE_yoeA_like, Subfamily of the multidrug and toxic compound extrusion (MATE)-like proteins similar to Bacillus subtilis yoeA

 Score = 37.4 bits (88), Expect = 0.004
 Identities = 19/122 (15%), Positives = 42/122 (34%), Gaps = 8/122 (6%)

Query: 1   QYQKIGTYTYPAMFFCIAICIPISVLWIFMDKVLI-LLGQDPDFFVEACNYAIWLILTLF 59
           + ++        +   + I + I +L  F    L+ L   DP+       Y     +   
Sbjct: 296 KIERAKKGLRTGIIISLIIGLIIILLVFFFAPQLLGLFTSDPEVIEIGAEYLRIYSIDYI 355

Query: 60  GYAILRSLSHNLQA--QSLILALFLSSCATLCLQILLCWVLVSKTDFGNTGAELTIGISY 117
            + IL   +   +   ++    + +S      ++I L ++L   T  G  G    I ++ 
Sbjct: 356 LFGILFVFNGLFRGLGKTKF-PMIISILRLWLVRIPLAYLLSRLTGLGLFG----IWLAM 410

Query: 118 WF 119
             
Sbjct: 411 PI 412

The integral membrane proteins from the MATE family are involved in exporting metabolites across the cell membrane and are responsible for multidrug resistance (MDR) in many bacteria and animals. A number of family members are involved in the synthesis of peptidoglycan components in bacteria. Length = 431

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	244
COG0534	455	NorM Na+-driven multidrug efflux pump [Defense mec	100.0
PRK10367	441	DNA-damage-inducible SOS response protein; Provisi	100.0
PRK00187	464	multidrug efflux protein NorA; Provisional	100.0
PRK10189	478	MATE family multidrug exporter; Provisional	100.0
PRK09575	453	vmrA multidrug efflux pump VmrA; Reviewed	100.0
PRK01766	456	multidrug efflux protein; Reviewed	100.0
KOG1347	473	consensus Uncharacterized membrane protein, predic	99.97
TIGR00797	342	matE putative efflux protein, MATE family. The MAT	99.97
TIGR01695	502	mviN integral membrane protein MviN. This model re	99.89
PRK15099	416	O-antigen translocase; Provisional	99.84
TIGR02900	488	spore_V_B stage V sporulation protein B. SpoVB is	99.81
PF03023	451	MVIN: MviN-like protein; InterPro: IPR004268 This	99.69
PRK01766	456	multidrug efflux protein; Reviewed	99.52
PRK00187	464	multidrug efflux protein NorA; Provisional	99.52
PRK10189	478	MATE family multidrug exporter; Provisional	99.5
COG0534	455	NorM Na+-driven multidrug efflux pump [Defense mec	99.48
PRK10367	441	DNA-damage-inducible SOS response protein; Provisi	99.48
PRK09575	453	vmrA multidrug efflux pump VmrA; Reviewed	99.43
PF01554	162	MatE: MatE; InterPro: IPR002528 Characterised memb	99.42
TIGR01695	502	mviN integral membrane protein MviN. This model re	99.36
COG0728	518	MviN Uncharacterized membrane protein, putative vi	99.33
PF01554	162	MatE: MatE; InterPro: IPR002528 Characterised memb	99.26
PRK10459	492	colanic acid exporter; Provisional	99.24
PF03023	451	MVIN: MviN-like protein; InterPro: IPR004268 This	99.23
COG0728	518	MviN Uncharacterized membrane protein, putative vi	99.19
TIGR02900	488	spore_V_B stage V sporulation protein B. SpoVB is	99.17
TIGR00797	342	matE putative efflux protein, MATE family. The MAT	98.9
PRK10459	492	colanic acid exporter; Provisional	98.79
PF14667	146	Polysacc_synt_C: Polysaccharide biosynthesis C-ter	98.67
COG2244	480	RfbX Membrane protein involved in the export of O-	98.52
PRK15099	416	O-antigen translocase; Provisional	98.4
PF01943	273	Polysacc_synt: Polysaccharide biosynthesis protein	98.32
PF13440	251	Polysacc_synt_3: Polysaccharide biosynthesis prote	98.29
COG2244	480	RfbX Membrane protein involved in the export of O-	98.27
KOG1347	473	consensus Uncharacterized membrane protein, predic	98.08
PF07260	345	ANKH: Progressive ankylosis protein (ANKH); InterP	97.38
PF04506	549	Rft-1: Rft protein; InterPro: IPR007594 Asymmetric	95.75
KOG2864	530	consensus Nuclear division RFT1 protein [Cell cycl	94.81
PF07260	345	ANKH: Progressive ankylosis protein (ANKH); InterP	88.31

>COG0534 NorM Na+-driven multidrug efflux pump [Defense mechanisms]

Probab=100.00  E-value=8.3e-40  Score=290.91  Aligned_cols=243  Identities=20%  Similarity=0.221  Sum_probs=227.4

Q ss_pred             CchhhHHHHHHHHHHHHHHHHHHHH-HHHhHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhhH
Q 036434            1 QYQKIGTYTYPAMFFCIAICIPISV-LWIFMDKVLILLGQDPDFFVEACNYAIWLILTLFGYAILRSLSHNLQAQSLILA   79 (244)
Q Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~il~~l~~~~~v~~~a~~yl~~~~~~~~~~~~~~~~~~~l~~~g~~~~   79 (244)
                      |+|++++..+++++++++.+++... .+++.++++++++.++|+.+.+.+|+++..++.|+..++.++++++|++||+|.
T Consensus        88 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ll~~l~~~~~v~~~a~~Yl~i~~~~~~~~~~~~~~~~~lr~~G~~~~  167 (455)
T COG0534          88 DRKKAKRVLGQGLLLALLLGLLLAILLLFFAEPLLRLLGAPAEVLELAAEYLRIILLGAPFALLSFVLSGILRGLGDTKT  167 (455)
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCch
Confidence            7899999999999999999977655 678899999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhh-cC-CCcchHHHHHHHHHHHH------------------------HhhhhHHHHHHHH
Q 036434           80 LFLSSCATLCLQILLCWVLVSK-TD-FGNTGAELTIGISYWFN------------------------EIFPSTKEFSFFA  133 (244)
Q Consensus        80 ~~~~~~~~~~~n~~l~~~~i~~-~~-~G~~G~a~at~i~~~~~------------------------~~~~~~~~~~~~~  133 (244)
                      ||+.++++++.|+++||+|+++ +| ||+.|+|+||.+++++.                        ++++.+|+++|+|
T Consensus       168 ~m~~~~~~~~lNivln~llI~g~~g~lGv~GAA~AT~ia~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~lG  247 (455)
T COG0534         168 PMYILLLGNLLNIVLNYLLIFGLFGGLGVAGAALATVIARWIGALLLLIYLLRKKRLLSLFKKKLLKPDRKLLKEILRLG  247 (455)
T ss_pred             hHHHHHHHHHHHHHhhHHHHHhccccccchhHHHHHHHHHHHHHHHHHHHHHhcchhhhhhhhhccCCCHHHHHHHHHhc
Confidence            9999999999999999999999 78 99999999999999998                        2446789999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHH---HHhhhH-H---HHHHHHhhhcCCCchhHHHHHHHHHHHH
Q 036434          134 HLSVVMFCLEWCSYEILVLLSGILPNPKLETSVLTIWY---LYRNPP-L---CSTRVANELGAGNPEPTRLSTCVVIFLA  206 (244)
Q Consensus       134 ~p~~~~~~~~~~~~~~~~~~~~~~g~~~la~~~~~i~~---~~~~~~-~---~~~~v~~~~G~~~~~~a~~~~~~~~~~~  206 (244)
                      .|.++++..+...+...+.+++++|++.+|++......   .++++. +   .++++||++|+||+|++|+..+.++.++
T Consensus       248 ~p~~~~~~~~~~~~~~~~~~~~~~G~~~lAa~~i~~~i~~~~~~~~~gi~~a~~~lvG~~~Ga~~~~~a~~~~~~~~~~~  327 (455)
T COG0534         248 LPIFLESLSESLGFLLLTLFVARLGTVALAAYGIALRIASFIFMPPFGIAQAVTILVGQNLGAGNYKRARRAARLALKLS  327 (455)
T ss_pred             ccHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999876544433   777777 6   9999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhcccchhccccCchhHHHHhhcccC
Q 036434          207 VAEAAIGSVALFCCRNVLAYLFNTDKDVVNYVSELVP  243 (244)
Q Consensus       207 ~~~~~~~~~~~~~~~~~i~~lft~~~~v~~~~~~~l~  243 (244)
                      +.++.+++.+++++++++.++|++|+|+.+.+.++++
T Consensus       328 ~~~~~~~~~i~~~f~~~i~~lF~~~~~v~~~~~~~l~  364 (455)
T COG0534         328 LLIALLIALLLLLFREPIISLFTTDPEVIALAVILLL  364 (455)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence            9999999999999999999999999999999998875

>PRK10367 DNA-damage-inducible SOS response protein; Provisional

Probab=100.00  E-value=2.5e-37  Score=274.47  Aligned_cols=243  Identities=12%  Similarity=0.022  Sum_probs=221.7

Q ss_pred             CchhhHHHHHHHHHHHHHHHHHHHHH-HHhHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhhH
Q 036434            1 QYQKIGTYTYPAMFFCIAICIPISVL-WIFMDKVLILLGQDPDFFVEACNYAIWLILTLFGYAILRSLSHNLQAQSLILA   79 (244)
Q Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~il~~l~~~~~v~~~a~~yl~~~~~~~~~~~~~~~~~~~l~~~g~~~~   79 (244)
                      |+||+++..+++++++.+++++...+ ..+.++++++++.|||+.+.+.+|+++..++.|+..+..++++++|++||+|.
T Consensus        81 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ll~~~g~~~~v~~~a~~Yl~i~~~~~~~~~~~~~~~~~lr~~G~~~~  160 (441)
T PRK10367         81 NPQALARALVQPLLLALGAGALIALLRTPLIDLALHIVGGSEAVLEQARRFLEIRWLSAPASLANLVLLGWLLGVQYARA  160 (441)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccchH
Confidence            68999999999999999999987765 55789999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHH-----------H--h------h-----hhHHHHHHHHHH
Q 036434           80 LFLSSCATLCLQILLCWVLVSKTDFGNTGAELTIGISYWFN-----------E--I------F-----PSTKEFSFFAHL  135 (244)
Q Consensus        80 ~~~~~~~~~~~n~~l~~~~i~~~~~G~~G~a~at~i~~~~~-----------~--~------~-----~~~~~~~~~~~p  135 (244)
                      ||+.+++++++|+++||+|++++++|+.|+|+||.+++++.           +  +      +     +.+|+++|+|.|
T Consensus       161 ~~~~~ii~~~vni~l~~~lI~~~~lGv~Gaa~At~is~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~ig~P  240 (441)
T PRK10367        161 PVILLVVGNILNIVLDLWLVMGLHMNVQGAALATVIAEYATLLIGLLMVRKVLKLRGISLEMLKTAWRGNFRRLLALNRD  240 (441)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccHHHhhhhhHHHHHHHHHhCch
Confidence            99999999999999999999999999999999999999876           0  0      1     235788999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHH---HHhhhH-H---HHHHHHhhhcCCCchhHHHHHHHHHHHHHH
Q 036434          136 SVVMFCLEWCSYEILVLLSGILPNPKLETSVLTIWY---LYRNPP-L---CSTRVANELGAGNPEPTRLSTCVVIFLAVA  208 (244)
Q Consensus       136 ~~~~~~~~~~~~~~~~~~~~~~g~~~la~~~~~i~~---~~~~~~-~---~~~~v~~~~G~~~~~~a~~~~~~~~~~~~~  208 (244)
                      .++++..+...+.+.+.+++++|++++|++......   .++++. +   .++++||++|+||+||+|+..+.+..++.+
T Consensus       241 ~~~~~~~~~~~~~~~~~~~~~~G~~alAa~~I~~~i~~~~~~~~~gl~~a~~~lvg~~~Ga~~~~~a~~~~~~~~~~~~~  320 (441)
T PRK10367        241 IMLRSLLLQLCFGAITVLGARLGSDIIAVNAVLMTLLTFTAYALDGFAYAVEAHSGQAYGARDGSQLLDVWRAACRQSGI  320 (441)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999988875443333   666666 6   999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhcccchhccccCchhHHHHhhcccC
Q 036434          209 EAAIGSVALFCCRNVLAYLFNTDKDVVNYVSELVP  243 (244)
Q Consensus       209 ~~~~~~~~~~~~~~~i~~lft~~~~v~~~~~~~l~  243 (244)
                      ++.+.+++++.+++++.++|++|+|+++.+.++++
T Consensus       321 ~~~~~~~~~~~~~~~i~~lFt~d~~v~~~~~~~l~  355 (441)
T PRK10367        321 VALLFSLVYALAGEHIIALLTSLPQIQQLADRYLI  355 (441)
T ss_pred             HHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHH
Confidence            99999999999999999999999999999988764

>PRK00187 multidrug efflux protein NorA; Provisional

Probab=100.00  E-value=4.9e-36  Score=267.99  Aligned_cols=243  Identities=17%  Similarity=0.192  Sum_probs=216.7

Q ss_pred             CchhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhhHH
Q 036434            1 QYQKIGTYTYPAMFFCIAICIPISVLWIFMDKVLILLGQDPDFFVEACNYAIWLILTLFGYAILRSLSHNLQAQSLILAL   80 (244)
Q Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~l~~~~~v~~~a~~yl~~~~~~~~~~~~~~~~~~~l~~~g~~~~~   80 (244)
                      |+||+++..++++.++.+++++..++.++.++++++++.|||+.+.+.+|+++..++.|+..+...+++++|++||++++
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~l~~~~~ev~~~~~~Yl~i~~~~~~~~~l~~~~~~~l~~~g~~~~~  160 (464)
T PRK00187         81 DIEGATRLAQAGLWLAWLLALVAALLLWNLKPLLLLFGQAPQNVDAAMQFLHLLPFALPGYLSFMALRGFTSALGRAGPV  160 (464)
T ss_pred             ChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHH
Confidence            68999999999999999999987766667899999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHhh-c---CCCcchHHHHHHHHHHHH-----------H--------------hhhhHHHHHH
Q 036434           81 FLSSCATLCLQILLCWVLVSK-T---DFGNTGAELTIGISYWFN-----------E--------------IFPSTKEFSF  131 (244)
Q Consensus        81 ~~~~~~~~~~n~~l~~~~i~~-~---~~G~~G~a~at~i~~~~~-----------~--------------~~~~~~~~~~  131 (244)
                      |+.++++.++|+++||+|+++ +   +||+.|+|+||.++++..           +              +++.+|+++|
T Consensus       161 ~~~~~~~~~~ni~~~~~lIfg~~g~p~~Gv~Gaalat~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~il~  240 (464)
T PRK00187        161 MVISLAGAVANLLLNYALIEGWFGLPKLGLMGIGLVTALVSNGMALALALYIRRHPAYAAYPLRKGLSRPSRAALRELWR  240 (464)
T ss_pred             HHHHHHHHHHHHHHHHHHHcCCCCCccccccchHHHHHHHHHHHHHHHHHHHHhcchhhhhhhhccccCCCHHHHHHHHH
Confidence            999999999999999999987 3   499999999999987765           0              1134689999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHH---HHhhhH-H---HHHHHHhhhcCCCchhHHHHHHHHHH
Q 036434          132 FAHLSVVMFCLEWCSYEILVLLSGILPNPKLETSVLTIWY---LYRNPP-L---CSTRVANELGAGNPEPTRLSTCVVIF  204 (244)
Q Consensus       132 ~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~la~~~~~i~~---~~~~~~-~---~~~~v~~~~G~~~~~~a~~~~~~~~~  204 (244)
                      +++|.++++..+...+.+++.+++++|++++|++......   .+.++. +   .++++||++|+||+|++|+..|.++.
T Consensus       241 lg~P~~~~~~~~~~~~~i~~~~i~~~G~~alAa~~i~~~i~~l~~~~~~gi~~a~~~lvgq~~Ga~~~~~~~~~~~~~l~  320 (464)
T PRK00187        241 LGLPIGGTYAVEVGLFTFAALCMGALGSTQLAAHQIALQIVSVAFMVPVGLSYAVTMRVGQHYGAGRLLEARRAGRVGIG  320 (464)
T ss_pred             hhhhHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence            9999999999999999999999999999988865333222   455555 5   99999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHhcccchhccccC--ch---hHHHHhhcccC
Q 036434          205 LAVAEAAIGSVALFCCRNVLAYLFNT--DK---DVVNYVSELVP  243 (244)
Q Consensus       205 ~~~~~~~~~~~~~~~~~~~i~~lft~--~~---~v~~~~~~~l~  243 (244)
                      ++++.+++.+++.+.+++++.++|++  |+   |+++.+.++++
T Consensus       321 ~~~~~~~~~~~~~~~f~~~i~~~ft~~~~~~~~~v~~~~~~~l~  364 (464)
T PRK00187        321 FGAVVMLLFAGLFWLLPEAIIGLFLDRNDPAFAEIVQLAVSLLA  364 (464)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHH
Confidence            99999999999999999999999974  44   67888777764

>PRK10189 MATE family multidrug exporter; Provisional

Probab=100.00  E-value=3.1e-35  Score=263.42  Aligned_cols=243  Identities=15%  Similarity=0.121  Sum_probs=219.1

Q ss_pred             CchhhHHHHHHHHHHHHHHHHHHHHH-HHhHHHHHHHcC--CChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChh
Q 036434            1 QYQKIGTYTYPAMFFCIAICIPISVL-WIFMDKVLILLG--QDPDFFVEACNYAIWLILTLFGYAILRSLSHNLQAQSLI   77 (244)
Q Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~il~~l~--~~~~v~~~a~~yl~~~~~~~~~~~~~~~~~~~l~~~g~~   77 (244)
                      |+||+++..+++++++..++++.+++ +++.++++.+++  .|||+.+.+.+|+++..++.|+..+..++++++||.||+
T Consensus       100 ~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~ll~l~~~~~~~~v~~~a~~Yl~i~~~~~~~~~~~~~~~~~lr~~G~~  179 (478)
T PRK10189        100 DRRRARAAARQSLVIMTLFAVLLAVLIHFFGEQIIDLVAGDATPEVKALALTYLELTVWSYPAAAITLIGSGALRGAGNT  179 (478)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCch
Confidence            68999999999999999999987764 567899999984  799999999999999999999999999999999999999


Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHhhc----CCCcchHHHHHHHHHHHH---------H-----------------hhhhHH
Q 036434           78 LALFLSSCATLCLQILLCWVLVSKT----DFGNTGAELTIGISYWFN---------E-----------------IFPSTK  127 (244)
Q Consensus        78 ~~~~~~~~~~~~~n~~l~~~~i~~~----~~G~~G~a~at~i~~~~~---------~-----------------~~~~~~  127 (244)
                      +.||+.++++.++|+++||.|+++.    +||+.|+|+||.+++++.         .                 +++.+|
T Consensus       180 ~~~~~i~~~~~~~ni~l~~~li~g~~~~~~lGv~Gaa~At~is~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  259 (478)
T PRK10189        180 KIPLLINGGMNILNIIISSILIYGLFSWQGLGFVGAGLGLTISRYIGAVAIIWVLMIGFNPALRISLKSYFKPLNFAIIW  259 (478)
T ss_pred             HHhHHHHHHHHHHHHHHhHHHHhcCCCCCccchHHHHHHHHHHHHHHHHHHHHHHHhccCccceeeeccccccCCHHHHH
Confidence            9999999999999999999999873    799999999999998876         0                 124578


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHH---HHhhhH-H---HHHHHHhhhcCCCchhHHHHHH
Q 036434          128 EFSFFAHLSVVMFCLEWCSYEILVLLSGILPNPKLETSVLTIWY---LYRNPP-L---CSTRVANELGAGNPEPTRLSTC  200 (244)
Q Consensus       128 ~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~la~~~~~i~~---~~~~~~-~---~~~~v~~~~G~~~~~~a~~~~~  200 (244)
                      +++|+|+|.+++...+...+.+.+.+++++|++++|++......   .++++. +   +++++||++|+||+|++|+..+
T Consensus       260 ~il~iG~P~~~~~~~~~~~~~~~~~~~~~~G~~~~Aa~~I~~~i~~~~~~~~~gi~~A~~~lvg~~~Ga~~~~~a~~~~~  339 (478)
T PRK10189        260 EVMGIGIPASIESVLFNGGKLLTQMFVAGMGTSVIAGNFIAFSIAALINLPGNALGSASTIITGTRLGKGQIAQAERQLR  339 (478)
T ss_pred             HHHHHhccHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence            99999999999999999999999999999999988875443322   555665 6   8999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHhcccchhccccCchhHHHHhhcccC
Q 036434          201 VVIFLAVAEAAIGSVALFCCRNVLAYLFNTDKDVVNYVSELVP  243 (244)
Q Consensus       201 ~~~~~~~~~~~~~~~~~~~~~~~i~~lft~~~~v~~~~~~~l~  243 (244)
                      .+..++++++.+.+++.+++++++.++||+|+|+++.+.++++
T Consensus       340 ~~~~~~~~~~~~~~~l~~~~~~~i~~lFt~d~~v~~~~~~~l~  382 (478)
T PRK10189        340 HVFWLSTLGLTAIAWLSAPFAGLLASFYTQDPDVKHVVKILIW  382 (478)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999888764

>PRK09575 vmrA multidrug efflux pump VmrA; Reviewed

Probab=100.00  E-value=2.7e-34  Score=256.15  Aligned_cols=243  Identities=14%  Similarity=0.105  Sum_probs=218.9

Q ss_pred             CchhhHHHHHHHHHHHHHHHHHHHH-HHHhHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhhH
Q 036434            1 QYQKIGTYTYPAMFFCIAICIPISV-LWIFMDKVLILLGQDPDFFVEACNYAIWLILTLFGYAILRSLSHNLQAQSLILA   79 (244)
Q Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~il~~l~~~~~v~~~a~~yl~~~~~~~~~~~~~~~~~~~l~~~g~~~~   79 (244)
                      |+||+++..+++++++.+++++..+ .+.+.++++++++.|+|+.+.+.+|+++..++.|+..+....++++|+.|+++.
T Consensus        84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~l~~~~~~~~~~~~~yl~i~~~~~~~~~l~~~~~~~l~~~g~~~~  163 (453)
T PRK09575         84 DLEKAKRILTTGLLLLLLLGPIVSVILFLFADDFLRAQGAEGRTLELALQYIQVLIWGCLFTLGAIALPFLLRNDESPNL  163 (453)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHH
Confidence            6899999999999999999998776 466789999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHH-----------------------HhhhhHHHHHHHHHHH
Q 036434           80 LFLSSCATLCLQILLCWVLVSKTDFGNTGAELTIGISYWFN-----------------------EIFPSTKEFSFFAHLS  136 (244)
Q Consensus        80 ~~~~~~~~~~~n~~l~~~~i~~~~~G~~G~a~at~i~~~~~-----------------------~~~~~~~~~~~~~~p~  136 (244)
                      ++..++.+.++|+++||+|++++++|+.|+++||.+++++.                       ++++.+|+++|+|.|.
T Consensus       164 ~~~~~~~~~~~ni~l~~~li~~~~~Gi~Gaa~At~is~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~ig~P~  243 (453)
T PRK09575        164 ATGLMVIGALINIVLDYLFIGWLDWGLTGAAIATALAQLVVTVLGLGYFFSSRANIRLTLKELRFNWSLAPKIVLLGSSS  243 (453)
T ss_pred             HHHHHHHHHHHHHHhhHHHHHhCCchhHHHHHHHHHHHHHHHHHHHHHHHCCCceeEEeeccCCcCHHHHHHHHHhChhH
Confidence            99999999999999999999988999999999999999987                       1335578999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHhcCCc-hHHHHHHHHHHH---HHhhhH-H---HHHHHHhhhcCCCchhHHHHHHHHHHHHHH
Q 036434          137 VVMFCLEWCSYEILVLLSGILPN-PKLETSVLTIWY---LYRNPP-L---CSTRVANELGAGNPEPTRLSTCVVIFLAVA  208 (244)
Q Consensus       137 ~~~~~~~~~~~~~~~~~~~~~g~-~~la~~~~~i~~---~~~~~~-~---~~~~v~~~~G~~~~~~a~~~~~~~~~~~~~  208 (244)
                      ++++..+...+.+.+.+++++|+ +++|++......   .++++. +   .++++||++|+||+||+|+..+.++.+++.
T Consensus       244 ~~~~~~~~~~~~~~~~~~~~~g~~~~lAa~~i~~~i~~~~~~~~~gi~~a~~~lvg~~~Ga~~~~~~~~~~~~~l~l~~~  323 (453)
T PRK09575        244 FFMYLYGSFVVALHNRLFMEYGSALTVGAYAIVGYLMVLYYLVAEGIAEGMQPPVSYYFGARQYDNIKKLLKLAMKVTVL  323 (453)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhcCCChHHHHHHHHHHHHHHHH
Confidence            99999999999999999999996 456654332221   444555 5   999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhcccchhccccC-chhHHHHhhcccC
Q 036434          209 EAAIGSVALFCCRNVLAYLFNT-DKDVVNYVSELVP  243 (244)
Q Consensus       209 ~~~~~~~~~~~~~~~i~~lft~-~~~v~~~~~~~l~  243 (244)
                      .+++.+++++.+++++.++|++ |||+++.+.++++
T Consensus       324 ~~~~~~~~~~~~~~~i~~lf~~~~~~v~~~~~~~l~  359 (453)
T PRK09575        324 AGIAWVLLLNLFPETMIALFNSGDSELIAETIVGIR  359 (453)
T ss_pred             HHHHHHHHHHHhHHHHHHhHcCCChHHHHHHHHHHH
Confidence            9999999999999999999995 7999999988875

>PRK01766 multidrug efflux protein; Reviewed

Probab=100.00  E-value=2.5e-33  Score=250.14  Aligned_cols=243  Identities=18%  Similarity=0.306  Sum_probs=218.8

Q ss_pred             CchhhHHHHHHHHHHHHHHHHHHHHH-HHhHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhhH
Q 036434            1 QYQKIGTYTYPAMFFCIAICIPISVL-WIFMDKVLILLGQDPDFFVEACNYAIWLILTLFGYAILRSLSHNLQAQSLILA   79 (244)
Q Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~il~~l~~~~~v~~~a~~yl~~~~~~~~~~~~~~~~~~~l~~~g~~~~   79 (244)
                      |+|++++.+++++.++++++++++++ ..+.++++++++.|||+.+.+.+|+++..++.|+..+..++++++|++||+++
T Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~yl~i~~~~~~~~~~~~~~~~~l~~~g~~~~  162 (456)
T PRK01766         83 RRERIAHQVRQGLWLALFLSVLIMLVLYNAVPPILNMMNLEPEVADIAVGYLHALLWGIPAYLLYQVLRSFIDGLGKTKP  162 (456)
T ss_pred             ChHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChH
Confidence            67899999999999999999987765 45678999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhc----CCCcchHHHHHHHHHHHH-----------H--------------hhhhHHHHH
Q 036434           80 LFLSSCATLCLQILLCWVLVSKT----DFGNTGAELTIGISYWFN-----------E--------------IFPSTKEFS  130 (244)
Q Consensus        80 ~~~~~~~~~~~n~~l~~~~i~~~----~~G~~G~a~at~i~~~~~-----------~--------------~~~~~~~~~  130 (244)
                      +++.++++.++|+++|++|+++.    ++|+.|+++||.+++++.           +              +++.+|+++
T Consensus       163 ~~~~~~i~~ivni~l~~~li~~~~~~~~~Gv~Gaa~at~is~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~il  242 (456)
T PRK01766        163 TMVIGFLGLLINIPLNYIFIYGKFGFPELGGVGCGVATAIVYWVMFLAMLIYIKRARRFRDFRLFKGLYKPDWAVIKRLL  242 (456)
T ss_pred             HHHHHHHHHHHHHHHHHHHHcCCCCCcccccccHHHHHHHHHHHHHHHHHHHHHhChhhhHHHhhccccCCCHHHHHHHH
Confidence            99999999999999999999762    489999999999999876           0              224578999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHH---HHhhhH-H---HHHHHHhhhcCCCchhHHHHHHHHH
Q 036434          131 FFAHLSVVMFCLEWCSYEILVLLSGILPNPKLETSVLTIWY---LYRNPP-L---CSTRVANELGAGNPEPTRLSTCVVI  203 (244)
Q Consensus       131 ~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~la~~~~~i~~---~~~~~~-~---~~~~v~~~~G~~~~~~a~~~~~~~~  203 (244)
                      |+++|.++++..+...+.+++.+++++|++++|+.......   .++++. +   .++++||++|+||+|++|+..+.++
T Consensus       243 ~l~~P~~~~~~~~~~~~~~~~~~~~~~G~~~lAa~~i~~~i~~~~~~~~~gl~~a~~~~v~~~~Ga~~~~~~~~~~~~~~  322 (456)
T PRK01766        243 KLGLPIGLAIFFEVSLFAVVTLLVSPLGTVTVAAHQIALNFSSLLFMLPLSLAMALTIRVGFELGAGRTLDARQYAYIGL  322 (456)
T ss_pred             HccchHHHHHHHHHHHHHHHHHHHHHcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHH
Confidence            99999999999999999999999999999888765433222   555555 5   8899999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHhcccchhccccCchhHHHHhhcccC
Q 036434          204 FLAVAEAAIGSVALFCCRNVLAYLFNTDKDVVNYVSELVP  243 (244)
Q Consensus       204 ~~~~~~~~~~~~~~~~~~~~i~~lft~~~~v~~~~~~~l~  243 (244)
                      .+++.++++..++++.+++++.++|++|||+.+.+.++++
T Consensus       323 ~~~~~~~~~~~~~~~~~~~~i~~lf~~d~~v~~~~~~~l~  362 (456)
T PRK01766        323 AVGLGMALLTAIFLVLFREQIALLYTDDPEVVALASHLLL  362 (456)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999988875

>KOG1347 consensus Uncharacterized membrane protein, predicted efflux pump [General function prediction only]

Probab=99.97  E-value=3.3e-29  Score=222.42  Aligned_cols=244  Identities=41%  Similarity=0.651  Sum_probs=229.5

Q ss_pred             CchhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhhHH
Q 036434            1 QYQKIGTYTYPAMFFCIAICIPISVLWIFMDKVLILLGQDPDFFVEACNYAIWLILTLFGYAILRSLSHNLQAQSLILAL   80 (244)
Q Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~l~~~~~v~~~a~~yl~~~~~~~~~~~~~~~~~~~l~~~g~~~~~   80 (244)
                      +++..+.+.+++..+....++|...++.+.++++..++|||++.+.+..|.++..|..+.......++.++|+|++..+.
T Consensus       100 ~~~~lg~~lqrs~~~l~~~~~~~~~l~~~~~~il~~lgq~~~i~~~a~~y~~~~ip~~~a~~~~~~l~~~lq~Q~~~~~~  179 (473)
T KOG1347|consen  100 KFTALGVYLQRSGIVLLVQGLPISLLILNSEPILLLLGQDPDISRDAGSYAFMLIPGLFSYAVSFPLAKFLQAQSITLPL  179 (473)
T ss_pred             ccchhhHHHHHHHHHHHHHHHHHHHHHHccHHHHHHhCCChhHHHHHhhhHhhhcchhhhhHHHHHHHHHHHhccCchHH
Confidence            47889999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHH---------------------HhhhhHHHHHHHHHHHHHH
Q 036434           81 FLSSCATLCLQILLCWVLVSKTDFGNTGAELTIGISYWFN---------------------EIFPSTKEFSFFAHLSVVM  139 (244)
Q Consensus        81 ~~~~~~~~~~n~~l~~~~i~~~~~G~~G~a~at~i~~~~~---------------------~~~~~~~~~~~~~~p~~~~  139 (244)
                      .+.......+|+.++|++++..++|..|++++..+++|..                     .+++++++++|.++|++++
T Consensus       180 ~~~~~~~~~lhi~~~~llv~~~~~g~~Gaala~~~s~w~~~~~l~~yi~~~~~~~~w~~~s~~~~~~~~~~~lai~s~~m  259 (473)
T KOG1347|consen  180 LVIGLVALVLHILLTWLLVSKLGLGIKGAALALVASYWLNVRILLLYAVLSGCLAAWSGFSGEFDSWGPFFALAIPSAVM  259 (473)
T ss_pred             HHHHHHHHHHHHHHHHHhhhcccCCCccchHHHHHHHHHHHHHHHHHheecCchhhhhhhhHhhhhHHHHHHHhhcchhe
Confidence            9999999999999999999999999999999999999998                     1268899999999999999


Q ss_pred             HHHHHHHHHHHHHHHhcCCchHHHHHHHHHHH-----HHhhhH-H---HHHHHHhhhcCCCchhHHHHHHHHHHHHHHHH
Q 036434          140 FCLEWCSYEILVLLSGILPNPKLETSVLTIWY-----LYRNPP-L---CSTRVANELGAGNPEPTRLSTCVVIFLAVAEA  210 (244)
Q Consensus       140 ~~~~~~~~~~~~~~~~~~g~~~la~~~~~i~~-----~~~~~~-~---~~~~v~~~~G~~~~~~a~~~~~~~~~~~~~~~  210 (244)
                      .++|++.+.+.....|.+++..++....++++     .|++|. +   ++++++|.+|+||+++||...+.+...++..+
T Consensus       260 iclE~w~~eil~l~~G~l~np~~~~~~~sI~~~~~~~~~~~~~~~~~a~strv~neLGag~p~~ar~~~~v~~~~~~~~g  339 (473)
T KOG1347|consen  260 ICLEWWAYEILVLLAGLLGNAKVSLASQSICLEIGGWHLMIPGAFSAAVSTRVSNELGAGKPKRARVSAKVALQTSVAIG  339 (473)
T ss_pred             eHHHHHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHcCCChhhhhhHHHHHHHHHHHHH
Confidence            99999999999999999998666655566655     677777 6   88999999999999999999999999999999


Q ss_pred             HHHHHHHHhcccchhccccCchhHHHHhhcccCC
Q 036434          211 AIGSVALFCCRNVLAYLFNTDKDVVNYVSELVPA  244 (244)
Q Consensus       211 ~~~~~~~~~~~~~i~~lft~~~~v~~~~~~~l~~  244 (244)
                      ...+...+.+++.+.++||+|+|+.+...+..|+
T Consensus       340 ~~~~~~~~~~r~~~~~ift~~~ev~~~va~~~pl  373 (473)
T KOG1347|consen  340 ASLGTTLLACREVLGQIFTNSKEVLDLVADLTPL  373 (473)
T ss_pred             HHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence            9999999999999999999999999999888763

>TIGR00797 matE putative efflux protein, MATE family

Probab=99.97  E-value=8.1e-28  Score=206.66  Aligned_cols=244  Identities=23%  Similarity=0.350  Sum_probs=216.9

Q ss_pred             CchhhHHHHHHHHHHHHHHHHHHHHH-HHhHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhhH
Q 036434            1 QYQKIGTYTYPAMFFCIAICIPISVL-WIFMDKVLILLGQDPDFFVEACNYAIWLILTLFGYAILRSLSHNLQAQSLILA   79 (244)
Q Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~il~~l~~~~~v~~~a~~yl~~~~~~~~~~~~~~~~~~~l~~~g~~~~   79 (244)
                      |+|++++..++++.+...++++.+++ ..+.+++.++++.|+|..+++.+|+++..++.|+..+..+.++.+|+.||++.
T Consensus        64 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~~~~~~  143 (342)
T TIGR00797        64 NYQRLGRQAQQSLLLALLLGLPVLLVGYFFIDPLLSLMGADGEVAELAQDYLRILILGIPAYLLNFVLRGFLRGQGDTKT  143 (342)
T ss_pred             ChHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchH
Confidence            56889999999999999999997764 56789999999889999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHh-hcC-CCcchHHHHHHHHHHHH--------H---------------hhhhHHHHHHHHH
Q 036434           80 LFLSSCATLCLQILLCWVLVS-KTD-FGNTGAELTIGISYWFN--------E---------------IFPSTKEFSFFAH  134 (244)
Q Consensus        80 ~~~~~~~~~~~n~~l~~~~i~-~~~-~G~~G~a~at~i~~~~~--------~---------------~~~~~~~~~~~~~  134 (244)
                      +++..+++.++|+.++++++. .+| +|+.|+++++.+++.+.        .               +++.+|+++|.+.
T Consensus       144 ~~~~~i~~~~~~i~~~~~li~~~~g~~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~  223 (342)
T TIGR00797       144 PMYITLIGNVINIILNYILIFGKFGFLGIVGAALATVISYWLMFLLLLYYIKKAKKIGLKWEGLLKPDWEVLKRLLKLGL  223 (342)
T ss_pred             HHHHHHHHHHHHHHHhHHHHhcCccccccHHHHHHHHHHHHHHHHHHHHHHHhCCCcccccccccCCCHHHHHHHHHhCc
Confidence            999999999999999999998 578 89999999999988876        1               1256799999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHH--HHHH-HHhhhH-H---HHHHHHhhhcCCCchhHHHHHHHHHHHHH
Q 036434          135 LSVVMFCLEWCSYEILVLLSGILPNPKLETSVL--TIWY-LYRNPP-L---CSTRVANELGAGNPEPTRLSTCVVIFLAV  207 (244)
Q Consensus       135 p~~~~~~~~~~~~~~~~~~~~~~g~~~la~~~~--~i~~-~~~~~~-~---~~~~v~~~~G~~~~~~a~~~~~~~~~~~~  207 (244)
                      |..+.+..+...+.+++.+++++|++++++...  .... ..+++. +   ..+.++++.|+||.|++|+..+.++...+
T Consensus       224 P~~~~~l~~~~~~~~~~~i~~~~g~~~v~~~~~a~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  303 (342)
T TIGR00797       224 PIAFRVILESLSFALLALLVARLGSIALAAHQIALNVESLLFMPAFGFGIAVSILVGQALGAGDPKRAKEVARVALKLSL  303 (342)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999877664322  1111 444444 4   88899999999999999999999999999


Q ss_pred             HHHHHHHHHHHhcccchhccccCchhHHHHhhcccCC
Q 036434          208 AEAAIGSVALFCCRNVLAYLFNTDKDVVNYVSELVPA  244 (244)
Q Consensus       208 ~~~~~~~~~~~~~~~~i~~lft~~~~v~~~~~~~l~~  244 (244)
                      .++.+..+.+.++++++.++|++||++.+.+.+++|+
T Consensus       304 ~~~~~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~  340 (342)
T TIGR00797       304 LLGLVLAIILILFREFIARLFTNDPEVLELAAIYLIF  340 (342)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999988874

The MATE family consists of probable efflux proteins including a functionally characterized multi drug efflux system from Vibrio parahaemolyticus, a putative ethionine resistance protein of Saccharomyces cerevisiae, and the functionally uncharacterized DNA damage-inducible protein F (DinF) of E. coli. These proteins have 12 probable TMS.

>TIGR01695 mviN integral membrane protein MviN

Probab=99.89  E-value=1.8e-20  Score=169.01  Aligned_cols=237  Identities=13%  Similarity=0.019  Sum_probs=190.2

Q ss_pred             hhhHHHHHHHHHHHHHHHHH-HHH-HHHhHHHHHHHc--CCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhh
Q 036434            3 QKIGTYTYPAMFFCIAICIP-ISV-LWIFMDKVLILL--GQDPDFFVEACNYAIWLILTLFGYAILRSLSHNLQAQSLIL   78 (244)
Q Consensus         3 ~~~~~~~~~~~~~~~~~~~~-~~~-~~~~~~~il~~l--~~~~~v~~~a~~yl~~~~~~~~~~~~~~~~~~~l~~~g~~~   78 (244)
                      |+.++...++++...+++.. ... .+.+++++..++  +.|+|..+.+.+|+++..++.|+..+....++++|+.||.+
T Consensus        75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~g~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~~~~~  154 (502)
T TIGR01695        75 KEARRAFANTVTTLLILSLLLVVLIGIFFAPFVISLLAPGFADETRSLAVSLTRIMFPYLLLISLAAVFGGILNARKRFF  154 (502)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCeeH
Confidence            46666777777766655544 344 455678888887  56888889999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhcCCCcchHH--HHHHHHHHHH--------------------HhhhhHHHHHHHHHHH
Q 036434           79 ALFLSSCATLCLQILLCWVLVSKTDFGNTGAE--LTIGISYWFN--------------------EIFPSTKEFSFFAHLS  136 (244)
Q Consensus        79 ~~~~~~~~~~~~n~~l~~~~i~~~~~G~~G~a--~at~i~~~~~--------------------~~~~~~~~~~~~~~p~  136 (244)
                      .+++.++..++.+++...++.  .++|..|++  +++.+++.+.                    .+++.+|+++|.+.|.
T Consensus       155 ~~~~~~i~~~i~~i~~~~~~~--~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~l~~~~p~  232 (502)
T TIGR01695       155 IPSFSPILFNIGVILSLLFFD--WNYGQYSLALAIGVLIGGVAQLLIQLPFLRKAGFLLKPRFNFRDPGLKRFLKLFLPT  232 (502)
T ss_pred             HHHHHHHHHHHHHHHHHHHHH--cccchHHHHHHHHHHHHHHHHHHHHHHHHHHCCCcccCcCCCCChhHHHHHHHHHHH
Confidence            999999999888877544443  468999988  9998888765                    1235689999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHhh-----hH-H---HHHHHHhhhcCCCchhHHHHHHHHHHHHH
Q 036434          137 VVMFCLEWCSYEILVLLSGILPNPKLETSVLTIWYLYRN-----PP-L---CSTRVANELGAGNPEPTRLSTCVVIFLAV  207 (244)
Q Consensus       137 ~~~~~~~~~~~~~~~~~~~~~g~~~la~~~~~i~~~~~~-----~~-~---~~~~v~~~~G~~~~~~a~~~~~~~~~~~~  207 (244)
                      .+++..+.....+++.+.+.+|+++++....... ....     .. +   ..|.+|++.|+||+|++|+..+++.....
T Consensus       233 ~~~~~~~~~~~~id~~~~~~~~~~~v~~~~~a~~-l~~~~~~~~~~~i~~~~~P~~s~~~~~~~~~~~~~~~~~~~~~~~  311 (502)
T TIGR01695       233 TLGSSASQITLLINTALASFLEIGSVSALYYANR-IYQLPLGIFGISLSTVLLPKLSRHASEGNWNELRDLLNQGIRLSL  311 (502)
T ss_pred             HHHHHHHHHHHHHHHHHHhcCCcchHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHH
Confidence            9999999999999999988888876654222111 2222     22 2   78999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhcccchhccccC----chhHHHHhhccc
Q 036434          208 AEAAIGSVALFCCRNVLAYLFNT----DKDVVNYVSELV  242 (244)
Q Consensus       208 ~~~~~~~~~~~~~~~~i~~lft~----~~~v~~~~~~~l  242 (244)
                      .++...+..+..+++++.++|..    |+|..+.+.+++
T Consensus       312 ~~~~~~~~~l~~~~~~ii~l~~~~~~f~~~~~~~~~~~l  350 (502)
T TIGR01695       312 LLTIPSSFGLLILSIPIVSLLFERGAFSEEDTVMTATIL  350 (502)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHH
Confidence            99999999999999999998865    556666665554

This model represents MviN, a family of integral membrane proteins predicted to have ten or more transmembrane regions. Although frequently listed as a virulence protein, it is not restricted to pathogens and it is an essential protein in Sinorhizobium meliloti. In a number of species its gene is adjacent to that of the uridylyltransferase GlnD, the signal-transducing enzyme that performs the key modification to the nitrogen regulatory protein PII.

>PRK15099 O-antigen translocase; Provisional

Probab=99.84  E-value=4.7e-18  Score=150.20  Aligned_cols=229  Identities=11%  Similarity=0.023  Sum_probs=181.8

Q ss_pred             CchhhHHHHHHHHHHHHHHHHHHHHH-HHhHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhhH
Q 036434            1 QYQKIGTYTYPAMFFCIAICIPISVL-WIFMDKVLILLGQDPDFFVEACNYAIWLILTLFGYAILRSLSHNLQAQSLILA   79 (244)
Q Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~il~~l~~~~~v~~~a~~yl~~~~~~~~~~~~~~~~~~~l~~~g~~~~   79 (244)
                      |+|+.++....++++....++..+.+ +.+.+++...++.||| .   ..+..+..+..+...+....++.+|+.||++.
T Consensus        72 ~~~~~~~~~~~~~~l~~~~~~i~~~~~~~~~~~i~~~~~~~~~-~---~~~~~~~~~~~~~~~~~~~~~~~lr~~~~~~~  147 (416)
T PRK15099         72 QPQQLRAVVGTSSAMVLGFSTLLALVFLLAAAPISQGLFGHTD-Y---QGVVRAVALIQMGIAWANLLLAILKGFRDAAG  147 (416)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChh-H---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            56788899999999999999987764 6678899988877774 2   35566666666677888899999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHH----------------------HhhhhHHHHHHHHHHHH
Q 036434           80 LFLSSCATLCLQILLCWVLVSKTDFGNTGAELTIGISYWFN----------------------EIFPSTKEFSFFAHLSV  137 (244)
Q Consensus        80 ~~~~~~~~~~~n~~l~~~~i~~~~~G~~G~a~at~i~~~~~----------------------~~~~~~~~~~~~~~p~~  137 (244)
                      ++...+++.++|+.+ ++++++. .|+.|+++||.+++.+.                      .+++.+|++++.|.|..
T Consensus       148 ~~~~~~~~~~~~i~l-~i~~~~~-~Gv~Ga~iat~i~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~ll~~g~p~~  225 (416)
T PRK15099        148 NALSLIVGSLIGVAA-YYLCYRL-GGYEGALLGLALVPALVVLPAGIMLIRRGTIPLSYLKPSWDNGLAGQLGKFTLMAL  225 (416)
T ss_pred             HHHHHHHHHHHHHHH-HHHHHHH-hcchHHHHHHHHHHHHHHHHHHHHHHHccceehHhhhccCCHHHHHHHHHHHHHHH
Confidence            999999999999887 5554442 39999999999998775                      12345799999999999


Q ss_pred             HHHHHHHHHHHHHHHHHh-cCCchHHHHHHH--HHHH-H-HhhhH-H---HHHHHHhhhcCCCchhHHHHHHHHHHHHHH
Q 036434          138 VMFCLEWCSYEILVLLSG-ILPNPKLETSVL--TIWY-L-YRNPP-L---CSTRVANELGAGNPEPTRLSTCVVIFLAVA  208 (244)
Q Consensus       138 ~~~~~~~~~~~~~~~~~~-~~g~~~la~~~~--~i~~-~-~~~~~-~---~~~~v~~~~G~~~~~~a~~~~~~~~~~~~~  208 (244)
                      +++.........++.+++ ++|+++++.-..  .+.. . ..++. +   ..|.++++   +|+||+|+..+........
T Consensus       226 ~~~~~~~i~~~~~~~~l~~~~g~~~vg~y~~a~~i~~~~~~~~~~~~~~a~~P~~s~~---~~~~~~~~~~~~~~~~~~~  302 (416)
T PRK15099        226 ITSVTLPVAYVMMRNLLAAHYSWDEVGIWQGVSSISDAYLQFITASFSVYLLPTLSRL---TEKRDITREIVKALKFVLP  302 (416)
T ss_pred             HHHHHHHHHHHHHHHHHHhcCCHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc---CChHHHHHHHHHHHHHHHH
Confidence            999999999999999996 889877653211  1111 2 23333 4   88888884   7889999999999999999


Q ss_pred             HHHHHHHHHHhcccchhccccCch--hHHHHh
Q 036434          209 EAAIGSVALFCCRNVLAYLFNTDK--DVVNYV  238 (244)
Q Consensus       209 ~~~~~~~~~~~~~~~i~~lft~~~--~v~~~~  238 (244)
                      ++.......+++++++.++|..|+  +..+..
T Consensus       303 ~~~~~~~~~~l~a~~ii~l~~g~~~~~~~~~~  334 (416)
T PRK15099        303 AVAAASFTVWLLRDFAIWLLFSNKFTAMRDLF  334 (416)
T ss_pred             HHHHHHHHHHHHHHHHHHHhccHHHHHHHHHH
Confidence            999999999999999999888765  344443

>TIGR02900 spore_V_B stage V sporulation protein B

Probab=99.81  E-value=2.6e-17  Score=147.96  Aligned_cols=230  Identities=13%  Similarity=0.080  Sum_probs=181.6

Q ss_pred             CchhhHHHHHHHHHHHHHHHHHHHHH-HHhHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhhH
Q 036434            1 QYQKIGTYTYPAMFFCIAICIPISVL-WIFMDKVLILLGQDPDFFVEACNYAIWLILTLFGYAILRSLSHNLQAQSLILA   79 (244)
Q Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~il~~l~~~~~v~~~a~~yl~~~~~~~~~~~~~~~~~~~l~~~g~~~~   79 (244)
                      |+|+.++.+++++++..+.+++.+++ ..+.+.+...++.|++.    ..|+++..+..|+..+....+.++|+++|.|.
T Consensus        72 ~~~~~~~~~~~~~~l~l~~~~~~~~l~~~~~~~i~~~~~~~~~~----~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~  147 (488)
T TIGR02900        72 DRKNIKKILKVSLIFTLIWSLIVTAIVFLLSPFIASTLLKDERS----LYSLLVICPAMPFIALSSVLKGYFQGISNMKP  147 (488)
T ss_pred             chhhHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHcCChhH----HHHHHHHHHHHHHHHHHHHHHHHHhhhccchH
Confidence            56889999999999999999987764 55677777777777754    35788999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhh-----cCCCcchHHHHHHHHHHHH------------H-------------hhhhHHHH
Q 036434           80 LFLSSCATLCLQILLCWVLVSK-----TDFGNTGAELTIGISYWFN------------E-------------IFPSTKEF  129 (244)
Q Consensus        80 ~~~~~~~~~~~n~~l~~~~i~~-----~~~G~~G~a~at~i~~~~~------------~-------------~~~~~~~~  129 (244)
                      ++....++.++|+.++..++..     .++|+.|+++++.++.++.            +             +++.+|++
T Consensus       148 ~~~~~~i~~i~~~~~~~~~~~~~~~~~~~~~v~g~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~l  227 (488)
T TIGR02900       148 PAYIQVIEQIVRISVVALLISAFLPYGLEYAVAGAYLSLVLGELVSLLYLYFFFKRKKSFSIRFPFFDYKSEGKALLFDL  227 (488)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccCcchHHHHHHH
Confidence            9999999999998887766543     2367888888887776554            0             12357899


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhcC----Cch-HHHHHHHH----HHH-HHhhhH-----H---HHHHHHhhhcCCC
Q 036434          130 SFFAHLSVVMFCLEWCSYEILVLLSGIL----PNP-KLETSVLT----IWY-LYRNPP-----L---CSTRVANELGAGN  191 (244)
Q Consensus       130 ~~~~~p~~~~~~~~~~~~~~~~~~~~~~----g~~-~la~~~~~----i~~-~~~~~~-----~---~~~~v~~~~G~~~  191 (244)
                      ++.+.|..+++........+|+.++++.    |.. ..+.+..+    ... ....|.     +   ..++++++.|+||
T Consensus       228 ~~~~~p~~l~~~~~~~~~~~d~~ii~~~l~~~g~~~~~a~~~~g~~~~~a~~i~~~~~~~~~~l~~~~~p~~s~~~~~~~  307 (488)
T TIGR02900       228 FSVSLPLTLSRFIGSLLYFLETLLVPQRLVIAGVTYREATSLYGKLSGMAMPLLTFPAVITSSLSTALVPDISEAMAKKN  307 (488)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHChHHHHHHhHHHHHHHHHHHHHHHHHHHHHcCC
Confidence            9999999999999999999999988764    211 11111111    111 111221     2   7899999999999


Q ss_pred             chhHHHHHHHHHHHHHHHHHHHHHHHHhcccchhccccCchhH
Q 036434          192 PEPTRLSTCVVIFLAVAEAAIGSVALFCCRNVLAYLFNTDKDV  234 (244)
Q Consensus       192 ~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~lft~~~~v  234 (244)
                      +|++|+..++.+..+..++...++.+..+++++.++|.++++.
T Consensus       308 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~~~~~~~~~  350 (488)
T TIGR02900       308 YSSIEKRINQAIKISLLLGLITTVILLVIPDELGALFYGRPDA  350 (488)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCch
Confidence            9999999999999999999999999999999999988766553

SpoVB is the stage V sporulation protein B of the bacterial endopore formation program in Bacillus subtilis and various other Firmcutes. It is nearly universal among endospore-formers. Paralogs with rather high sequence similarity to SpoVB exist, including YkvU in B. subtilis and a number of proteins in the genus Clostridium. Member sequences for the seed alignment were chosen to select those proteins, no more than one to a genome, closest to B. subtilis SpoVB in a neighbor joining tree.

>PF03023 MVIN: MviN-like protein; InterPro: IPR004268 This entry represents MviN, a family of integral membrane proteins predicted to have ten or more transmembrane regions

Probab=99.69  E-value=1.5e-13  Score=122.69  Aligned_cols=224  Identities=16%  Similarity=0.123  Sum_probs=184.2

Q ss_pred             chhhHHHHHHHHHHHHHHHHHHHHH-HHhHHHHHHHc--CCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhh
Q 036434            2 YQKIGTYTYPAMFFCIAICIPISVL-WIFMDKVLILL--GQDPDFFVEACNYAIWLILTLFGYAILRSLSHNLQAQSLIL   78 (244)
Q Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~il~~l--~~~~~v~~~a~~yl~~~~~~~~~~~~~~~~~~~l~~~g~~~   78 (244)
                      .|+.++..++.+.....+++.++.+ +++++++.+.+  |.|+|..+.+.+++++..|..++.++...+.+.+|+++|..
T Consensus        49 ~~~~~~f~~~~~~~~~~~~~~l~~l~~lfa~~iv~~la~g~~~~~~~la~~l~~i~~~~~~~~~l~~i~~a~L~~~~~F~  128 (451)
T PF03023_consen   49 EEEARRFISTLLTILLIISLLLTLLGILFAPPIVRLLAPGFSPETIELAVQLLRILAPSILFIGLSSIFSAILNAHRRFL  128 (451)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcch
Confidence            4667777777777777777776654 66889999887  66899999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhcCCC---cchHHHHHHHHHHHH------------------H--hhhhHHHHHHHHHH
Q 036434           79 ALFLSSCATLCLQILLCWVLVSKTDFG---NTGAELTIGISYWFN------------------E--IFPSTKEFSFFAHL  135 (244)
Q Consensus        79 ~~~~~~~~~~~~n~~l~~~~i~~~~~G---~~G~a~at~i~~~~~------------------~--~~~~~~~~~~~~~p  135 (244)
                      .|....+..++.-+..-.++...  .|   +.+.++|..++....                  .  +.++.|+++|...|
T Consensus       129 ~~~~~~l~~N~~~I~~~~~~~~~--~~~~~i~~la~g~~~g~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p  206 (451)
T PF03023_consen  129 IPALSPLLFNLSIILSLLLLSNS--WGQENIYALAWGVLIGAIIQFLIQLPYLRRFGFRFRPKFDWRDPNLKRFLKLAIP  206 (451)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHh--cCchHHHHHHHHHHHHHHHHHHHHHHHHHHCCCcccccCCCCChhHHHHHHHHHH
Confidence            99998888776655543333332  55   788899998888877                  1  22458999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHhhhH-H--------HHHHHHhhhcCCCchhHHHHHHHHHHHH
Q 036434          136 SVVMFCLEWCSYEILVLLSGILPNPKLETSVLTIWYLYRNPP-L--------CSTRVANELGAGNPEPTRLSTCVVIFLA  206 (244)
Q Consensus       136 ~~~~~~~~~~~~~~~~~~~~~~g~~~la~~~~~i~~~~~~~~-~--------~~~~v~~~~G~~~~~~a~~~~~~~~~~~  206 (244)
                      ..+..........+++.+.+.+++.++++-.++.. .+..|. +        .-|..+++..+||.++.|+..++++...
T Consensus       207 ~~l~~~~~qi~~lv~~~laS~l~~G~vs~l~YA~~-l~~lp~~i~~~~i~tv~~P~ls~~~~~~d~~~~~~~~~~~l~~~  285 (451)
T PF03023_consen  207 LLLSSSISQINILVDRALASFLGEGSVSALNYAQR-LYQLPLGIFAVSISTVVFPKLSRLAAEGDWEEFRKTLRKALRLI  285 (451)
T ss_pred             HHHHHHHHHHHHHHHHHHHhCCCccHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHH
Confidence            99999999999999999999999987764222222 455555 3        4577899999999999999999999999


Q ss_pred             HHHHHHHHHHHHhcccchhccc
Q 036434          207 VAEAAIGSVALFCCRNVLAYLF  228 (244)
Q Consensus       207 ~~~~~~~~~~~~~~~~~i~~lf  228 (244)
                      ..+.+..++.+..+++++.++.
T Consensus       286 ~~i~iP~~~~~~~~a~~iV~ll  307 (451)
T PF03023_consen  286 LLILIPASIGLIVLAEPIVRLL  307 (451)
T ss_pred             HHHHHHHHHHHHHhhHHHHHHH
Confidence            9999999999999999998854

Although frequently listed as a virulence protein, it is not restricted to pathogens and it is an essential protein in Sinorhizobium meliloti. In a number of species its gene is adjacent to that of the uridylyltransferase GlnD, the signal-transducing enzyme that performs the key modification to the nitrogen regulatory protein PII []. Disruption of the MviN open reading frame results in flagellar structures that contain only the basal body and hook complex that lack the flagellum; suggesting that MviN might be involved in flagellin export or assembly []. Genome comparison studies led to MviN being predicted to be a peptidoglycan lipid II flippase though currently there is no direct evidence to support this annotation [].

>PRK01766 multidrug efflux protein; Reviewed

Probab=99.52  E-value=1.1e-12  Score=117.32  Aligned_cols=120  Identities=18%  Similarity=0.249  Sum_probs=113.0

Q ss_pred             CchhhHHHHHHHHHHHHHHHHHHHH-HHHhHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhhH
Q 036434            1 QYQKIGTYTYPAMFFCIAICIPISV-LWIFMDKVLILLGQDPDFFVEACNYAIWLILTLFGYAILRSLSHNLQAQSLILA   79 (244)
Q Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~il~~l~~~~~v~~~a~~yl~~~~~~~~~~~~~~~~~~~l~~~g~~~~   79 (244)
                      |+|++++..++++.++..++++.+. .+.+.+++.+++++|||+.+.+..|+++..++.++..+..+.++.+||.||++.
T Consensus       310 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~lf~~d~~v~~~~~~~l~~~~~~~~~~~~~~~~~~~l~g~g~~~~  389 (456)
T PRK01766        310 RTLDARQYAYIGLAVGLGMALLTAIFLVLFREQIALLYTDDPEVVALASHLLLFAALFQFSDAIQVIGSGALRGYKDTRV  389 (456)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhccCccHH
Confidence            6899999999999999999999765 566899999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHH-HHHHHHHHHHHhhcCCCcchHHHHHHHHHHHH
Q 036434           80 LFLSSCATL-CLQILLCWVLVSKTDFGNTGAELTIGISYWFN  120 (244)
Q Consensus        80 ~~~~~~~~~-~~n~~l~~~~i~~~~~G~~G~a~at~i~~~~~  120 (244)
                      +++.++.+. +++++++|++.+..++|+.|+++++.+++++.
T Consensus       390 ~~~~~~~~~~~~~i~~~~~l~~~~~~G~~G~~~~~~~~~~~~  431 (456)
T PRK01766        390 IFFITFIAYWVLGLPLGYILALTDPMGPFGFWIGLIIGLTAA  431 (456)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhccCCCceehHHHHHHHHHHH
Confidence            999999988 78999999998877899999999999999987

>PRK00187 multidrug efflux protein NorA; Provisional

Probab=99.52  E-value=1.7e-13  Score=122.92  Aligned_cols=121  Identities=18%  Similarity=0.051  Sum_probs=104.1

Q ss_pred             hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHH---HHhhhH-H---HHHHHHhhhcCCCchh
Q 036434          122 IFPSTKEFSFFAHLSVVMFCLEWCSYEILVLLSGILPNPKLETSVLTIWY---LYRNPP-L---CSTRVANELGAGNPEP  194 (244)
Q Consensus       122 ~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~la~~~~~i~~---~~~~~~-~---~~~~v~~~~G~~~~~~  194 (244)
                      +++++|+++|+++|.+++++.+.....+|+.+++++|++++|+.......   .+.++. +   .++++||++|+||+|+
T Consensus         5 ~~~~~k~il~~a~P~~~~~~~~~~~~~~d~~~v~~lg~~alAa~~i~~~i~~~~~~~~~gl~~~~~~i~aq~~Ga~~~~~   84 (464)
T PRK00187          5 PTTELKAILRLAGPLIASQLAHMLMVFTDTLMMGRLGPEALAGGGLGAASYSFVSIFCVGVIAAVGTLVAIRHGAGDIEG   84 (464)
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhh
Confidence            56789999999999999999999999999999999999988753322221   333334 4   8899999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhcccchhccccCchhHHHHhhcccC
Q 036434          195 TRLSTCVVIFLAVAEAAIGSVALFCCRNVLAYLFNTDKDVVNYVSELVP  243 (244)
Q Consensus       195 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~lft~~~~v~~~~~~~l~  243 (244)
                      +|+..+.++.++++++++..++.+ +.+++.++|+.|||+.+.+.+|++
T Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~il~l~~~~~ev~~~~~~Yl~  132 (464)
T PRK00187         85 ATRLAQAGLWLAWLLALVAALLLW-NLKPLLLLFGQAPQNVDAAMQFLH  132 (464)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHcCCCHHHHHHHHHHHH
Confidence            999999999999999998887766 568999999999999999999875

>PRK10189 MATE family multidrug exporter; Provisional

Probab=99.50  E-value=4.8e-13  Score=120.33  Aligned_cols=120  Identities=12%  Similarity=0.019  Sum_probs=104.7

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHH---HHhhhH-H---HHHHHHhhhcCCCchhHH
Q 036434          124 PSTKEFSFFAHLSVVMFCLEWCSYEILVLLSGILPNPKLETSVLTIWY---LYRNPP-L---CSTRVANELGAGNPEPTR  196 (244)
Q Consensus       124 ~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~la~~~~~i~~---~~~~~~-~---~~~~v~~~~G~~~~~~a~  196 (244)
                      +.+|+++|+++|.+++++.+.....+|+.+++++|++++|+.......   .+.+.. +   .++++||++|+||+|+++
T Consensus        26 ~~~k~il~la~P~~~~~~~~~~~~~vd~~~vg~lG~~alAA~~i~~~i~~~~~~~~~gl~~g~~~lvsq~~Ga~~~~~~~  105 (478)
T PRK10189         26 LFWREITPLAVPIFIENLCVLLMGVLSTFLVSWLGKEAMAGVGLADSFNMVIMAFFAAIDLGTTVVVAFSLGKRDRRRAR  105 (478)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHH
Confidence            448999999999999999999999999999999999888764333222   333333 3   889999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhcccchhcccc--CchhHHHHhhcccC
Q 036434          197 LSTCVVIFLAVAEAAIGSVALFCCRNVLAYLFN--TDKDVVNYVSELVP  243 (244)
Q Consensus       197 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~lft--~~~~v~~~~~~~l~  243 (244)
                      +..+.++.+++.++++.+++.+.+++++.++|+  +|||+.+.+.+|++
T Consensus       106 ~~~~~~l~~~~~~~~~~~~l~~~~~~~ll~l~~~~~~~~v~~~a~~Yl~  154 (478)
T PRK10189        106 AAARQSLVIMTLFAVLLAVLIHFFGEQIIDLVAGDATPEVKALALTYLE  154 (478)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhCCCChHHHHHHHHHHH
Confidence            999999999999999999999999999999995  79999999998875

>COG0534 NorM Na+-driven multidrug efflux pump [Defense mechanisms]

Probab=99.48  E-value=5.2e-13  Score=119.30  Aligned_cols=121  Identities=17%  Similarity=0.084  Sum_probs=105.9

Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHH---HHhhhH-H---HHHHHHhhhcCCCchhH
Q 036434          123 FPSTKEFSFFAHLSVVMFCLEWCSYEILVLLSGILPNPKLETSVLTIWY---LYRNPP-L---CSTRVANELGAGNPEPT  195 (244)
Q Consensus       123 ~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~la~~~~~i~~---~~~~~~-~---~~~~v~~~~G~~~~~~a  195 (244)
                      .+..|+++|+++|..+.++.+.....+|+.++||++++++|+...+...   .+.+.. +   .+++++|++|+||++++
T Consensus        13 ~~~~k~l~~la~P~i~~~l~~~l~~~vD~~~vG~~~~~alaav~la~~i~~~~~~~~~gl~~g~~~liaq~~Ga~~~~~~   92 (455)
T COG0534          13 KKILKLLLKLAIPIILGNLLQTLYGLVDTFMVGHLGAEALAAVGLANPIFFLIIAIFIGLGTGTTVLVAQAIGAGDRKKA   92 (455)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHcCCchHHH
Confidence            3478999999999999999999999999999999998888754333222   222222 2   99999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhcccchhccccCchhHHHHhhcccC
Q 036434          196 RLSTCVVIFLAVAEAAIGSVALFCCRNVLAYLFNTDKDVVNYVSELVP  243 (244)
Q Consensus       196 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~lft~~~~v~~~~~~~l~  243 (244)
                      |+..+.+++++++.++.++++.+.+++++.+++++++|+.+.+.+|+.
T Consensus        93 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~ll~~l~~~~~v~~~a~~Yl~  140 (455)
T COG0534          93 KRVLGQGLLLALLLGLLLAILLLFFAEPLLRLLGAPAEVLELAAEYLR  140 (455)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHhHHHHHHHHHH
Confidence            999999999999999999999999999999999999999999999975

>PRK10367 DNA-damage-inducible SOS response protein; Provisional

Probab=99.48  E-value=5.5e-13  Score=118.80  Aligned_cols=121  Identities=14%  Similarity=0.031  Sum_probs=103.6

Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CchHHHHHHHHHHH---HHhhhH-H---HHHHHHhhhcCCCchh
Q 036434          123 FPSTKEFSFFAHLSVVMFCLEWCSYEILVLLSGIL-PNPKLETSVLTIWY---LYRNPP-L---CSTRVANELGAGNPEP  194 (244)
Q Consensus       123 ~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~-g~~~la~~~~~i~~---~~~~~~-~---~~~~v~~~~G~~~~~~  194 (244)
                      +++.|+++|+++|..+++..+.....+|+.++|++ |++++|+.......   .+.+.. +   .++++||++|+||+|+
T Consensus         5 ~~~~k~il~la~P~~~~~~~~~~~~~vd~~~vg~l~g~~alAa~~l~~~i~~~~~~~~~~~~~g~~~lvsq~~Ga~~~~~   84 (441)
T PRK10367          5 TSSDKALWRLALPMIFSNITVPLLGLVDTAVIGHLDSPVYLGGVAVGATATSFLFMLLLFLRMSTTGLTAQAFGAKNPQA   84 (441)
T ss_pred             cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHH
Confidence            57789999999999999999999999999999999 55567643222111   233333 3   8899999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhcccchhccccCchhHHHHhhcccC
Q 036434          195 TRLSTCVVIFLAVAEAAIGSVALFCCRNVLAYLFNTDKDVVNYVSELVP  243 (244)
Q Consensus       195 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~lft~~~~v~~~~~~~l~  243 (244)
                      +++..+.++.++++.++++..+...+.+++.++++.|||+.+.+.+|+.
T Consensus        85 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ll~~~g~~~~v~~~a~~Yl~  133 (441)
T PRK10367         85 LARALVQPLLLALGAGALIALLRTPLIDLALHIVGGSEAVLEQARRFLE  133 (441)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999999999875

>PRK09575 vmrA multidrug efflux pump VmrA; Reviewed

Probab=99.43  E-value=5.8e-12  Score=112.67  Aligned_cols=118  Identities=19%  Similarity=0.186  Sum_probs=108.9

Q ss_pred             CchhhHHHHHHHHHHHHHHHHHHHHH-HHhHHHHHHHcCC-ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhh
Q 036434            1 QYQKIGTYTYPAMFFCIAICIPISVL-WIFMDKVLILLGQ-DPDFFVEACNYAIWLILTLFGYAILRSLSHNLQAQSLIL   78 (244)
Q Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~il~~l~~-~~~v~~~a~~yl~~~~~~~~~~~~~~~~~~~l~~~g~~~   78 (244)
                      |+||+++..+++++++...+++.+++ +.+.+++.++++. |||+.+.+.+|+++..++.|+..+..+.++++||.||++
T Consensus       306 ~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~~i~~lf~~~~~~v~~~~~~~l~i~~~~~~~~~~~~~~~~~~~~~g~~~  385 (453)
T PRK09575        306 QYDNIKKLLKLAMKVTVLAGIAWVLLLNLFPETMIALFNSGDSELIAETIVGIRLHLFAMFLDGFLVLASAYFMAVNQGG  385 (453)
T ss_pred             ChHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhHcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcH
Confidence            68999999999999999999997765 5689999999995 799999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHH
Q 036434           79 ALFLSSCATLCLQILLCWVLVSKTDFGNTGAELTIGISYWFN  120 (244)
Q Consensus        79 ~~~~~~~~~~~~n~~l~~~~i~~~~~G~~G~a~at~i~~~~~  120 (244)
                      .+++.+.....+|+++.|++...  +|+.|+|+++.+++++.
T Consensus       386 ~~~~~~~~~~~v~ip~~~ll~~~--~G~~Gvw~a~~~~~~~~  425 (453)
T PRK09575        386 KALFISIGNMLIQLPFLFILPKW--LGVDGVWLAMPLSNIAL  425 (453)
T ss_pred             HHHHHHHHhHHHHHHHHHHHHHH--HCcchHhhHHHHHHHHH
Confidence            99999998888899999888654  79999999999998876

>PF01554 MatE: MatE; InterPro: IPR002528 Characterised members of the Multi Antimicrobial Extrusion (MATE) family function as drug/sodium antiporters

Probab=99.42  E-value=1.9e-13  Score=104.99  Aligned_cols=110  Identities=16%  Similarity=0.192  Sum_probs=96.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHH--H-HHhhhH-H---HHHHHHhhhcCCCchhHHHHHHHHHHHHH
Q 036434          135 LSVVMFCLEWCSYEILVLLSGILPNPKLETSVLTIW--Y-LYRNPP-L---CSTRVANELGAGNPEPTRLSTCVVIFLAV  207 (244)
Q Consensus       135 p~~~~~~~~~~~~~~~~~~~~~~g~~~la~~~~~i~--~-~~~~~~-~---~~~~v~~~~G~~~~~~a~~~~~~~~~~~~  207 (244)
                      |.+++++.+...+.+++.+++++|++++++......  . .+.+.. +   .++++|++.|+||+|++|+..+.++.++.
T Consensus         1 P~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~i~~~~~~~~~~~~~g~~~a~~~~~s~~~G~~~~~~~~~~~~~~~~~~~   80 (162)
T PF01554_consen    1 PIALMQLLQVLGFIIDTIFVGRLGPEALAAYGIASSIFSILFMLIFGLATALQILISQNIGAGDYKRAKKVVRQGLLLSL   80 (162)
T ss_dssp             HHHHHHHHHHHHHHHHHHCCHCCTTCCCCHCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCSSSTTTCCCHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhhhcccccccccceeecccccccccccccccccccccch
Confidence            889999999999999999999999988875322211  1 333444 4   89999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhcccchhccccCchhHHHHhhcccCC
Q 036434          208 AEAAIGSVALFCCRNVLAYLFNTDKDVVNYVSELVPA  244 (244)
Q Consensus       208 ~~~~~~~~~~~~~~~~i~~lft~~~~v~~~~~~~l~~  244 (244)
                      +++++..++.+.+++++.++|++|+|+.+.+.+++++
T Consensus        81 ~~~~~~~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~  117 (162)
T PF01554_consen   81 IIGLLLSLVLLLFSEFILSLFGNDPEVIEIARQYLRI  117 (162)
T ss_dssp             HHHHHHHHHHHHHHHCCHCTSSSTTCCHHHHHHHHCC
T ss_pred             hcccchhhhhhhHHHHHHHHhhhhHHHHHHhhccchh
Confidence            9999999999999999999999999999999988764

These proteins mediate resistance to a wide range of cationic dyes, fluroquinolones, aminoglycosides and other structurally diverse antibodies and drugs. MATE proteins are found in bacteria, archaea and eukaryotes. These proteins are predicted to have 12 alpha-helical transmembrane regions, some of the animal proteins may have an additional C-terminal helix. ; GO: 0015238 drug transmembrane transporter activity, 0015297 antiporter activity, 0006855 drug transmembrane transport, 0055085 transmembrane transport, 0016020 membrane; PDB: 3MKU_B 3MKT_B.

>TIGR01695 mviN integral membrane protein MviN

Probab=99.36  E-value=6.4e-11  Score=107.00  Aligned_cols=118  Identities=19%  Similarity=0.232  Sum_probs=107.8

Q ss_pred             CchhhHHHHHHHHHHHHHHHHHHHH-HHHhHHHHHHHcCC----ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 036434            1 QYQKIGTYTYPAMFFCIAICIPISV-LWIFMDKVLILLGQ----DPDFFVEACNYAIWLILTLFGYAILRSLSHNLQAQS   75 (244)
Q Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~il~~l~~----~~~v~~~a~~yl~~~~~~~~~~~~~~~~~~~l~~~g   75 (244)
                      |+||.++..++++.....+++|.+. +..+++++.+++..    |+|..+.+..++++.+++.++..+...+.+.+++.|
T Consensus       295 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ii~l~~~~~~f~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~a~g  374 (502)
T TIGR01695       295 NWNELRDLLNQGIRLSLLLTIPSSFGLLILSIPIVSLLFERGAFSEEDTVMTATILAAYGLGLIFYSLQKVLLRAFYARK  374 (502)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhcc
Confidence            5788999999999999999999776 46688999988754    678899999999999999999999999999999999


Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHH
Q 036434           76 LILALFLSSCATLCLQILLCWVLVSKTDFGNTGAELTIGISYWFN  120 (244)
Q Consensus        76 ~~~~~~~~~~~~~~~n~~l~~~~i~~~~~G~~G~a~at~i~~~~~  120 (244)
                      |+|.+++.++.+.++|++++++++..  +|..|+++|+.+++.+.
T Consensus       375 ~~~~~~~~~~~~~~i~i~l~~~l~~~--~G~~G~~~a~~i~~~~~  417 (502)
T TIGR01695       375 DTRTPFINSVISVVLNALLSLLLIFP--LGLVGIALATSAASMVS  417 (502)
T ss_pred             CCccCHHHHHHHHHHHHHHHHHHHHH--HhhhHHHHHHHHHHHHH
Confidence            99999999999999999999999865  78999999999998877

This model represents MviN, a family of integral membrane proteins predicted to have ten or more transmembrane regions. Although frequently listed as a virulence protein, it is not restricted to pathogens and it is an essential protein in Sinorhizobium meliloti. In a number of species its gene is adjacent to that of the uridylyltransferase GlnD, the signal-transducing enzyme that performs the key modification to the nitrogen regulatory protein PII.

>COG0728 MviN Uncharacterized membrane protein, putative virulence factor [General function prediction only]

Probab=99.33  E-value=2.6e-09  Score=95.65  Aligned_cols=221  Identities=13%  Similarity=0.027  Sum_probs=171.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHH-HHhHHHHHHHc-CC--ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhhHHHH
Q 036434            7 TYTYPAMFFCIAICIPISVL-WIFMDKVLILL-GQ--DPDFFVEACNYAIWLILTLFGYAILRSLSHNLQAQSLILALFL   82 (244)
Q Consensus         7 ~~~~~~~~~~~~~~~~~~~~-~~~~~~il~~l-~~--~~~v~~~a~~yl~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~   82 (244)
                      +..+........+.+..+++ ..+.+.+.+.+ +.  |++....+....++..|.+++.++.....+.+|..++...|-+
T Consensus        88 ~f~~~v~~~l~~~ll~vt~L~~l~~p~iv~~~~~~g~~~~~~~~a~~l~~i~~Pyl~~isL~al~~aiLNs~~~F~~~a~  167 (518)
T COG0728          88 FFSRLVTGLLTLVLLLVTLLGILFAPWLVRLLLAPGFDETDKFLAVLLTRILFPYLLFISLSALFGAILNSRNRFFIPAF  167 (518)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCeechhhh
Confidence            33333333444444455554 45677777444 33  3444447888999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHH------------------Hhh--hhHHHHHHHHHHHHHHHHH
Q 036434           83 SSCATLCLQILLCWVLVSKTDFGNTGAELTIGISYWFN------------------EIF--PSTKEFSFFAHLSVVMFCL  142 (244)
Q Consensus        83 ~~~~~~~~n~~l~~~~i~~~~~G~~G~a~at~i~~~~~------------------~~~--~~~~~~~~~~~p~~~~~~~  142 (244)
                      .-+.-++.-+.....+....+....+.+|++.++-..+                  +++  +++|++.+...|..+....
T Consensus       168 aPvl~Nv~~I~~~l~~~~~~~~~~~~La~gvl~Gg~~Q~l~~lp~l~~~g~~~~p~~~~~~~~lk~~~~~~~p~~l~~si  247 (518)
T COG0728         168 APVLLNVSVIGLALFLGPYFDPPLLALAWGVLIGGLLQLLVQLPALRKAGLLIKPRFGFKDPGLKRFLKLMLPALLGVSI  247 (518)
T ss_pred             hHHHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHcccccCCCCCCCchhHHHHHHHHHHHHHHHHH
Confidence            98888877665666555543235677888887777666                  122  5799999999999999999


Q ss_pred             HHHHHHHHHHHHhcCCchHHHHHHHHHHHHHhhhH-H--------HHHHHHhhhcCCCchhHHHHHHHHHHHHHHHHHHH
Q 036434          143 EWCSYEILVLLSGILPNPKLETSVLTIWYLYRNPP-L--------CSTRVANELGAGNPEPTRLSTCVVIFLAVAEAAIG  213 (244)
Q Consensus       143 ~~~~~~~~~~~~~~~g~~~la~~~~~i~~~~~~~~-~--------~~~~v~~~~G~~~~~~a~~~~~~~~~~~~~~~~~~  213 (244)
                      .+....+++.+.+.+.+.+.+.-.++-. ++++|. +        .-+..|++..++|.++.++..+.++..++...+..
T Consensus       248 sQi~lli~~~iAS~l~~Gsis~l~YA~r-l~qlPlGifgvai~tvllP~lSr~~~~~~~~~~~~~l~~~i~l~lll~lP~  326 (518)
T COG0728         248 SQINLLIDTAIASFLAEGSVSWLYYADR-LYQLPLGIFGVALSTVLLPSLSRHAANGDWPEFLKLLDWGLRLTLLLTLPA  326 (518)
T ss_pred             HHHHHHHHHHHHHhhccccHHHHHHHHH-HHHhhHHHHHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999998876653222222 788888 5        66889999999999999999999999999999999


Q ss_pred             HHHHHhcccchhccc
Q 036434          214 SVALFCCRNVLAYLF  228 (244)
Q Consensus       214 ~~~~~~~~~~i~~lf  228 (244)
                      +..+.++++++.++.
T Consensus       327 ~~~l~~la~piv~~L  341 (518)
T COG0728         327 SAGLLVLAEPIVSLL  341 (518)
T ss_pred             HHHHHHHHHHHHHHH
Confidence            999999999998753

>PF01554 MatE: MatE; InterPro: IPR002528 Characterised members of the Multi Antimicrobial Extrusion (MATE) family function as drug/sodium antiporters

Probab=99.26  E-value=2.7e-12  Score=98.50  Aligned_cols=97  Identities=19%  Similarity=0.322  Sum_probs=92.7

Q ss_pred             CchhhHHHHHHHHHHHHHHHHHHHHH-HHhHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhhH
Q 036434            1 QYQKIGTYTYPAMFFCIAICIPISVL-WIFMDKVLILLGQDPDFFVEACNYAIWLILTLFGYAILRSLSHNLQAQSLILA   79 (244)
Q Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~il~~l~~~~~v~~~a~~yl~~~~~~~~~~~~~~~~~~~l~~~g~~~~   79 (244)
                      |+||+++.++++++++.+++++..++ ..+.+++.++++.|+|+.+.+.+|+++..++.|+..+..+.++++||.||+|.
T Consensus        64 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~  143 (162)
T PF01554_consen   64 DYKRAKKVVRQGLLLSLIIGLLLSLVLLLFSEFILSLFGNDPEVIEIARQYLRIMAFSIPFFALFFVFSGILQGIGRTKI  143 (162)
T ss_dssp             STTTCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCHCTSSSTTCCHHHHHHHHCCHHHHHHHHHHHHHHCCCCGCCSTHCC
T ss_pred             cccccccccccccccchhcccchhhhhhhHHHHHHHHhhhhHHHHHHhhccchhhhhHHHHHHHHHHHHHHHHHCCcHHH
Confidence            68999999999999999999998875 67889999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHH-HHHHHHHHH
Q 036434           80 LFLSSCATL-CLQILLCWV   97 (244)
Q Consensus        80 ~~~~~~~~~-~~n~~l~~~   97 (244)
                      +++.++.+. ++|++++|+
T Consensus       144 ~~~~~~~~~~~~~i~l~yl  162 (162)
T PF01554_consen  144 AMYISIISFWIINIPLAYL  162 (162)
T ss_dssp             CHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhHHhC
Confidence            999999999 999999985

These proteins mediate resistance to a wide range of cationic dyes, fluroquinolones, aminoglycosides and other structurally diverse antibodies and drugs. MATE proteins are found in bacteria, archaea and eukaryotes. These proteins are predicted to have 12 alpha-helical transmembrane regions, some of the animal proteins may have an additional C-terminal helix. ; GO: 0015238 drug transmembrane transporter activity, 0015297 antiporter activity, 0006855 drug transmembrane transport, 0055085 transmembrane transport, 0016020 membrane; PDB: 3MKU_B 3MKT_B.

>PRK10459 colanic acid exporter; Provisional

Probab=99.24  E-value=9.3e-09  Score=92.87  Aligned_cols=217  Identities=14%  Similarity=0.042  Sum_probs=155.6

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHH-hHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhhHHHH
Q 036434            4 KIGTYTYPAMFFCIAICIPISVLWI-FMDKVLILLGQDPDFFVEACNYAIWLILTLFGYAILRSLSHNLQAQSLILALFL   82 (244)
Q Consensus         4 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~il~~l~~~~~v~~~a~~yl~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~   82 (244)
                      +-++.....+++....++....+.+ +.+.+...+ .+||.    ...+++..+..++..+....+..+|+..+.+....
T Consensus        72 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~-~~~~~----~~~~~~~~~~~~~~~~~~~~~~~l~r~~~f~~~a~  146 (492)
T PRK10459         72 ISHLQLSTLYWLNVGLGIVVFVLVFLLSPLIADFY-HNPEL----APLIKTLSLAFVIIPIGQQFRALLQKELEFNKLAK  146 (492)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-CChhh----HHHHHHHHHHHHHHHHhhHHHHHHHHHhhhHHHHH
Confidence            3356667777777777777655443 455555544 45543    35677778888888888889999999999998888


Q ss_pred             HHHHHHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHH-----------------HhhhhHHHHHHHHHHHHHHHHHHHH
Q 036434           83 SSCATLCLQILLCWVLVSKTDFGNTGAELTIGISYWFN-----------------EIFPSTKEFSFFAHLSVVMFCLEWC  145 (244)
Q Consensus        83 ~~~~~~~~n~~l~~~~i~~~~~G~~G~a~at~i~~~~~-----------------~~~~~~~~~~~~~~p~~~~~~~~~~  145 (244)
                      ......+........+.. .+.|+.+..+++.++..+.                 .+++.+|++++.+.|....+.....
T Consensus       147 ~~~~~~i~~~~~~i~~~~-~~~g~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~k~ll~~~~~~~~~~~~~~~  225 (492)
T PRK10459        147 IEISAVVAGFTFAVVSAF-FWPGALAAILGYLVNSSVRTLLFGYFGRKIYRPALHFSLASVKPNLSFGAWQTAERIINYL  225 (492)
T ss_pred             HHHHHHHHHHHHHHHHHH-HCCcHHHHHHHHHHHHHHHHHHHHHHhcccCCccceecHHHHHHHHhhhHHHHHHHHHHHH
Confidence            877777766666554443 4688888888887776543                 1245689999999999999999999


Q ss_pred             HHHHHHHHHhcC-CchHHHHHHHHHHH-HHhhhH-H--------HHHHHHhhhcCCCchhHHHHHHHHHHHHHHHHHHHH
Q 036434          146 SYEILVLLSGIL-PNPKLETSVLTIWY-LYRNPP-L--------CSTRVANELGAGNPEPTRLSTCVVIFLAVAEAAIGS  214 (244)
Q Consensus       146 ~~~~~~~~~~~~-g~~~la~~~~~i~~-~~~~~~-~--------~~~~v~~~~G~~~~~~a~~~~~~~~~~~~~~~~~~~  214 (244)
                      ....|+.+++++ |+++++  .++... ....|. .        .-|..++.  ++|+++.|+..++........++..+
T Consensus       226 ~~~~d~~~lg~~lg~~~vG--~Y~~A~~l~~~~~~~i~~~i~~v~~P~~s~~--~~~~~~~~~~~~~~~~~~~~~~~p~~  301 (492)
T PRK10459        226 NTNIDTILIGRILGAEVLG--GYNLAYNVATVPPMKINPIITRVAFPVFAKI--QDDTEKLRVGFLKLLSVLGIINFPLL  301 (492)
T ss_pred             HhcCchhhhhHhhchHhhh--hHHHHHHHHHHHHHHHHHHHHHHHhHHHHHh--cCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999998886 554443  333322 223333 2        33455553  67888999999999999999999999


Q ss_pred             HHHHhcccchhccc-cC
Q 036434          215 VALFCCRNVLAYLF-NT  230 (244)
Q Consensus       215 ~~~~~~~~~i~~lf-t~  230 (244)
                      ..+.++++++..++ ++
T Consensus       302 ~~l~~~a~~ii~ll~g~  318 (492)
T PRK10459        302 LGLMVVSNNFVPLVFGE  318 (492)
T ss_pred             HHHHHHhHHHHHHhcCh
Confidence            98899988887654 44

>PF03023 MVIN: MviN-like protein; InterPro: IPR004268 This entry represents MviN, a family of integral membrane proteins predicted to have ten or more transmembrane regions

Probab=99.23  E-value=1.6e-09  Score=96.93  Aligned_cols=118  Identities=22%  Similarity=0.203  Sum_probs=109.2

Q ss_pred             CchhhHHHHHHHHHHHHHHHHHHHH-HHHhHHHHHHHcC----CChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 036434            1 QYQKIGTYTYPAMFFCIAICIPISV-LWIFMDKVLILLG----QDPDFFVEACNYAIWLILTLFGYAILRSLSHNLQAQS   75 (244)
Q Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~il~~l~----~~~~v~~~a~~yl~~~~~~~~~~~~~~~~~~~l~~~g   75 (244)
                      |.++.++.+++++.....+.+|..+ +..+++++.+++.    -|+|-.+....+++++++++|+..+...+.+.+.++|
T Consensus       270 d~~~~~~~~~~~l~~~~~i~iP~~~~~~~~a~~iV~llf~rG~F~~~~~~~ta~~l~~y~~~l~~~~l~~ll~r~fya~~  349 (451)
T PF03023_consen  270 DWEEFRKTLRKALRLILLILIPASIGLIVLAEPIVRLLFERGAFTAEDTQLTASALRIYALGLPFYALNDLLSRVFYALG  349 (451)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHccCCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHcc
Confidence            5788999999999999999999876 5678999998874    4888899999999999999999999999999999999


Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHH
Q 036434           76 LILALFLSSCATLCLQILLCWVLVSKTDFGNTGAELTIGISYWFN  120 (244)
Q Consensus        76 ~~~~~~~~~~~~~~~n~~l~~~~i~~~~~G~~G~a~at~i~~~~~  120 (244)
                      |+|.|+++++.+.++|+++++.++..  +|..|.++|+.++.+++
T Consensus       350 ~~~~~~~~~~~~~~lni~l~~~l~~~--~g~~Glala~sl~~~i~  392 (451)
T PF03023_consen  350 DTKTPVRISVISVVLNIILSILLVPF--FGVAGLALATSLSAIIS  392 (451)
T ss_pred             CcHhHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHH
Confidence            99999999999999999999888776  89999999999999887

Although frequently listed as a virulence protein, it is not restricted to pathogens and it is an essential protein in Sinorhizobium meliloti. In a number of species its gene is adjacent to that of the uridylyltransferase GlnD, the signal-transducing enzyme that performs the key modification to the nitrogen regulatory protein PII []. Disruption of the MviN open reading frame results in flagellar structures that contain only the basal body and hook complex that lack the flagellum; suggesting that MviN might be involved in flagellin export or assembly []. Genome comparison studies led to MviN being predicted to be a peptidoglycan lipid II flippase though currently there is no direct evidence to support this annotation [].

>COG0728 MviN Uncharacterized membrane protein, putative virulence factor [General function prediction only]

Probab=99.19  E-value=1.4e-08  Score=91.11  Aligned_cols=118  Identities=18%  Similarity=0.276  Sum_probs=106.7

Q ss_pred             CchhhHHHHHHHHHHHHHHHHHHHH-HHHhHHHHHHHcC----CChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 036434            1 QYQKIGTYTYPAMFFCIAICIPISV-LWIFMDKVLILLG----QDPDFFVEACNYAIWLILTLFGYAILRSLSHNLQAQS   75 (244)
Q Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~il~~l~----~~~~v~~~a~~yl~~~~~~~~~~~~~~~~~~~l~~~g   75 (244)
                      |.++.++..++++.+..+..+|... +..+++|+.+.+.    -++|..+....-+..++.+++++.+...+...+.+++
T Consensus       304 ~~~~~~~~l~~~i~l~lll~lP~~~~l~~la~piv~~Lf~rG~F~~~d~~~ta~~L~~y~~gL~~~~L~~ll~~~FYAr~  383 (518)
T COG0728         304 DWPEFLKLLDWGLRLTLLLTLPASAGLLVLAEPIVSLLFERGAFTAEDVLMTAEALAAYSLGLIPFALVKLLSRVFYARE  383 (518)
T ss_pred             ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHcc
Confidence            5678899999999999999999876 5678999998873    3778888889999999999999999999999999999


Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHH
Q 036434           76 LILALFLSSCATLCLQILLCWVLVSKTDFGNTGAELTIGISYWFN  120 (244)
Q Consensus        76 ~~~~~~~~~~~~~~~n~~l~~~~i~~~~~G~~G~a~at~i~~~~~  120 (244)
                      |+|.|+.+++++.++|+.+|+.+...  +|..|.++++.++.|++
T Consensus       384 d~ktP~~i~ii~~~~n~~l~~~l~~~--~~~~giala~s~a~~~~  426 (518)
T COG0728         384 DTKTPMKIAIISLVVNILLNLLLIPP--LGHVGLALATSLAAWVN  426 (518)
T ss_pred             CCCcChHHHHHHHHHHHHHHHHHHhh--ccchHHHHHHHHHHHHH
Confidence            99999999999999999999777665  77788999999998887

>TIGR02900 spore_V_B stage V sporulation protein B

Probab=99.17  E-value=2.5e-09  Score=96.20  Aligned_cols=116  Identities=20%  Similarity=0.165  Sum_probs=103.0

Q ss_pred             CchhhHHHHHHHHHHHHHHHHHHHH-HHHhHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhhH
Q 036434            1 QYQKIGTYTYPAMFFCIAICIPISV-LWIFMDKVLILLGQDPDFFVEACNYAIWLILTLFGYAILRSLSHNLQAQSLILA   79 (244)
Q Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~il~~l~~~~~v~~~a~~yl~~~~~~~~~~~~~~~~~~~l~~~g~~~~   79 (244)
                      |+|+.++..++.+.....+++|.++ ...++++++..+..++    ++.+|+++.+++.++..+....++.+++.||+|.
T Consensus       307 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~~~~~~~----~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~  382 (488)
T TIGR02900       307 NYSSIEKRINQAIKISLLLGLITTVILLVIPDELGALFYGRP----DAGNFIRVLAPSFPFLYFSAPLQSILQGLGKQKV  382 (488)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC----chHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchH
Confidence            4678999999999999999999776 4667899998887554    3678999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHH
Q 036434           80 LFLSSCATLCLQILLCWVLVSKTDFGNTGAELTIGISYWFN  120 (244)
Q Consensus        80 ~~~~~~~~~~~n~~l~~~~i~~~~~G~~G~a~at~i~~~~~  120 (244)
                      +++.++.+.++|+++|+.++....+|+.|+++++.+++.+.
T Consensus       383 ~~~~~~~~~i~~i~l~~~l~~~~~~G~~Gaaia~~i~~~~~  423 (488)
T TIGR02900       383 ALRNSLIGAIVKIILLFVLTSIPSINIYGYAITFIITSVLV  423 (488)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHH
Confidence            99999999999999999987444589999999999998877

SpoVB is the stage V sporulation protein B of the bacterial endopore formation program in Bacillus subtilis and various other Firmcutes. It is nearly universal among endospore-formers. Paralogs with rather high sequence similarity to SpoVB exist, including YkvU in B. subtilis and a number of proteins in the genus Clostridium. Member sequences for the seed alignment were chosen to select those proteins, no more than one to a genome, closest to B. subtilis SpoVB in a neighbor joining tree.

>TIGR00797 matE putative efflux protein, MATE family

Probab=98.90  E-value=1.5e-08  Score=87.06  Aligned_cols=109  Identities=17%  Similarity=0.109  Sum_probs=90.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHH---HHhhhH-H---HHHHHHhhhcCCCchhHHHHHHHHHHHHH
Q 036434          135 LSVVMFCLEWCSYEILVLLSGILPNPKLETSVLTIWY---LYRNPP-L---CSTRVANELGAGNPEPTRLSTCVVIFLAV  207 (244)
Q Consensus       135 p~~~~~~~~~~~~~~~~~~~~~~g~~~la~~~~~i~~---~~~~~~-~---~~~~v~~~~G~~~~~~a~~~~~~~~~~~~  207 (244)
                      |..+.+........+++.+++++|++++++.......   ...++. +   ..+.++++.|+||+|++++..+.+..+..
T Consensus         1 p~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~a~~i~~~~~~~~~~i~~~~~~~~s~~~g~~~~~~~~~~~~~~~~~~~   80 (342)
T TIGR00797         1 PAILANILQPLLGLVDTAFVGHLGPVDLAAVSLGSSVFMFLFSILMGLGTATTALVAQAVGAGNYQRLGRQAQQSLLLAL   80 (342)
T ss_pred             ChHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHhHHHHHHHHHHHHHHHHhHHHHHHHHHCCCChHHHHHHHHHHHHHHH
Confidence            7788888999999999999999998776542221111   223333 3   88999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhcccchhccccCchhHHHHhhcccC
Q 036434          208 AEAAIGSVALFCCRNVLAYLFNTDKDVVNYVSELVP  243 (244)
Q Consensus       208 ~~~~~~~~~~~~~~~~i~~lft~~~~v~~~~~~~l~  243 (244)
                      ..+++.+++.+.+++++.++|+.|++..+.+.++++
T Consensus        81 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~l~  116 (342)
T TIGR00797        81 LLGLPVLLVGYFFIDPLLSLMGADGEVAELAQDYLR  116 (342)
T ss_pred             HHHHHHHHHHHHhHHHHHHHhCCCHHHHHHHHHHHH
Confidence            999999999999999999999988888887776654

The MATE family consists of probable efflux proteins including a functionally characterized multi drug efflux system from Vibrio parahaemolyticus, a putative ethionine resistance protein of Saccharomyces cerevisiae, and the functionally uncharacterized DNA damage-inducible protein F (DinF) of E. coli. These proteins have 12 probable TMS.

>PRK10459 colanic acid exporter; Provisional

Probab=98.79  E-value=1.4e-06  Score=78.80  Aligned_cols=116  Identities=14%  Similarity=0.015  Sum_probs=98.1

Q ss_pred             CchhhHHHHHHHHHHHHHHHHHHHH-HHHhHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhhH
Q 036434            1 QYQKIGTYTYPAMFFCIAICIPISV-LWIFMDKVLILLGQDPDFFVEACNYAIWLILTLFGYAILRSLSHNLQAQSLILA   79 (244)
Q Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~il~~l~~~~~v~~~a~~yl~~~~~~~~~~~~~~~~~~~l~~~g~~~~   79 (244)
                      |.|+.++.+++.+.....+++|... +...+++++..+..++  .+.+...+++..+...+..+.......+++.|++|.
T Consensus       278 ~~~~~~~~~~~~~~~~~~~~~p~~~~l~~~a~~ii~ll~g~~--~~~a~~~l~il~~~~~~~~~~~~~~~~l~a~g~~~~  355 (492)
T PRK10459        278 DTEKLRVGFLKLLSVLGIINFPLLLGLMVVSNNFVPLVFGEK--WNSAIPILQLLCIVGLLRSVGNPIGSLLLAKGRADL  355 (492)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhcChh--HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccch
Confidence            4678899999999999999999776 5667899887764433  456789999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHH
Q 036434           80 LFLSSCATLCLQILLCWVLVSKTDFGNTGAELTIGISYWFN  120 (244)
Q Consensus        80 ~~~~~~~~~~~n~~l~~~~i~~~~~G~~G~a~at~i~~~~~  120 (244)
                      ++..+++.++++++..+.+...  +|+.|+++++.+++.+.
T Consensus       356 ~~~~~~~~~~~~i~~~~~~~~~--~G~~g~a~a~~i~~~~~  394 (492)
T PRK10459        356 SFKWNVFKTFLFIPAIVIGGQL--AGLIGVALGFLLVQIIN  394 (492)
T ss_pred             hHHHHHHHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHHH
Confidence            9999999888888877766644  69999999999988766

>PF14667 Polysacc_synt_C: Polysaccharide biosynthesis C-terminal domain

Probab=98.67  E-value=2.5e-06  Score=64.15  Aligned_cols=68  Identities=24%  Similarity=0.297  Sum_probs=64.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhcChhhHHHHHHHHHHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHH
Q 036434           51 AIWLILTLFGYAILRSLSHNLQAQSLILALFLSSCATLCLQILLCWVLVSKTDFGNTGAELTIGISYWFN  120 (244)
Q Consensus        51 l~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~n~~l~~~~i~~~~~G~~G~a~at~i~~~~~  120 (244)
                      +++.+++.++..+....++.+++.||+|.++..++.+.++|+++|+.++..  +|..|+++|+.+++...
T Consensus         2 l~il~~~~~~~~l~~~~~~il~~~~k~~~~~~~~~~~~~v~i~~~~~li~~--~G~~Gaa~a~~i~~~~~   69 (146)
T PF14667_consen    2 LQILALAIIFMGLSQPLGSILQAMGKTKWPFIITLIGAIVNIILNYILIPR--FGIYGAAIATAISEIVS   69 (146)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHHHHH--HHHhHHHHHHHHHHHHH
Confidence            678899999999999999999999999999999999999999999999866  89999999999999987

>COG2244 RfbX Membrane protein involved in the export of O-antigen and teichoic acid [General function prediction only]

Probab=98.52  E-value=5.3e-05  Score=68.20  Aligned_cols=185  Identities=14%  Similarity=0.050  Sum_probs=129.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhhHHHHHHHHHHHHHHHHHHHHHh-hcCCCcchHHHHHHHHHHHH----
Q 036434           46 EACNYAIWLILTLFGYAILRSLSHNLQAQSLILALFLSSCATLCLQILLCWVLVS-KTDFGNTGAELTIGISYWFN----  120 (244)
Q Consensus        46 ~a~~yl~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~n~~l~~~~i~-~~~~G~~G~a~at~i~~~~~----  120 (244)
                      .....+++.....+........++.+|+.++.+......+.. ..-...-..+.. ..+.+..+...+...+....    
T Consensus       115 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  193 (480)
T COG2244         115 VLALLLRILSLALLLLPLSSVLRGLFQGFGRFGPLALSIVSS-IFLLAAVFALLFAALGLAVWALVLGAVVSLLVLLILL  193 (480)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccchhHHHHH-HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHH
Confidence            445567778888999999999999999999999998884444 111111111111 12234444444433322222    


Q ss_pred             -----------Hh--hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CchHHHH-H-HHHHHH-HHhhhH-H---H
Q 036434          121 -----------EI--FPSTKEFSFFAHLSVVMFCLEWCSYEILVLLSGIL-PNPKLET-S-VLTIWY-LYRNPP-L---C  179 (244)
Q Consensus       121 -----------~~--~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~-g~~~la~-~-~~~i~~-~~~~~~-~---~  179 (244)
                                 ++  ++.+++.++.+.|..............|+.++++. |+++.+. + ...+.. ...+.. +   .
T Consensus       194 ~~~~~~~~~~~~~~~~~~~~~~l~~~~p~~~~~~~~~l~~~~D~~~i~~~l~~~~vG~Y~~a~~i~~~~~~~~~~l~~~l  273 (480)
T COG2244         194 GKKKRGLKRPILRFSLALLKELLRFGLPLLLSSLLNFLFTNIDTLLLGLFLGPAQVGIYSAAQRLVSLLLIVASALNRVL  273 (480)
T ss_pred             HHhhhhccccccCchhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhhHheecccccHHHHHHHHHHHHHHHHH
Confidence                       12  57889999999999999999999999999999986 4444431 1 111111 222222 2   7


Q ss_pred             HHHHHhhhcCCCchhHHHHHHHHHHHHHHHHHHHHHHHHhcccchhccc-cCc
Q 036434          180 STRVANELGAGNPEPTRLSTCVVIFLAVAEAAIGSVALFCCRNVLAYLF-NTD  231 (244)
Q Consensus       180 ~~~v~~~~G~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~lf-t~~  231 (244)
                      -|..++...+||.++.++..+.........+......+..+++++..++ +++
T Consensus       274 ~P~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~l~~~~~~~i~~~fg~~  326 (480)
T COG2244         274 FPALSRAYAEGDRKALKKLLRQSLKLLLLISIPALLGLLLLAPPIITLLFGEK  326 (480)
T ss_pred             HHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhheeecCCc
Confidence            7999999999999999999999999999999999999999998887755 444

>PRK15099 O-antigen translocase; Provisional

Probab=98.40  E-value=1.4e-05  Score=70.72  Aligned_cols=116  Identities=16%  Similarity=0.169  Sum_probs=94.2

Q ss_pred             CchhhHHHHHHHHHHHHHHHHHHHHH-HHhHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhhH
Q 036434            1 QYQKIGTYTYPAMFFCIAICIPISVL-WIFMDKVLILLGQDPDFFVEACNYAIWLILTLFGYAILRSLSHNLQAQSLILA   79 (244)
Q Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~il~~l~~~~~v~~~a~~yl~~~~~~~~~~~~~~~~~~~l~~~g~~~~   79 (244)
                      |+||.++..++.......++++.+.. .++++++.+++..|+  .+++.+++++..++.++...........-..++++.
T Consensus       285 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~a~~ii~l~~g~~--~~~~~~~~~~l~~~~~l~~~~~~~g~~~~~~~~~~~  362 (416)
T PRK15099        285 EKRDITREIVKALKFVLPAVAAASFTVWLLRDFAIWLLFSNK--FTAMRDLFAWQLVGDVLKVGAYVFGYLVIAKASLRF  362 (416)
T ss_pred             ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            56889999999999999988887764 578899999886554  112566888877777777666666666668888888


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHH
Q 036434           80 LFLSSCATLCLQILLCWVLVSKTDFGNTGAELTIGISYWFN  120 (244)
Q Consensus        80 ~~~~~~~~~~~n~~l~~~~i~~~~~G~~G~a~at~i~~~~~  120 (244)
                      .+...+...+++++++++++..  +|..|+++++.+++.+.
T Consensus       363 ~~~~~~~~~~l~i~l~~~li~~--~G~~G~a~a~~is~~~~  401 (416)
T PRK15099        363 YILAEVSQFTLLTGFAHWLIPL--HGALGAAQAYMATYIVY  401 (416)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHH--hhhHHHHHHHHHHHHHH
Confidence            8888888889999999999887  79999999999999876

>PF01943 Polysacc_synt: Polysaccharide biosynthesis protein; InterPro: IPR002797 Members of this family are integral membrane proteins [], and many are implicated in the production of polysaccharide

Probab=98.32  E-value=0.00054  Score=56.28  Aligned_cols=104  Identities=19%  Similarity=0.075  Sum_probs=82.1

Q ss_pred             HHHHHHHHHHHHHHhcChhhHHHHHHHHHHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHH------------------
Q 036434           59 FGYAILRSLSHNLQAQSLILALFLSSCATLCLQILLCWVLVSKTDFGNTGAELTIGISYWFN------------------  120 (244)
Q Consensus        59 ~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~n~~l~~~~i~~~~~G~~G~a~at~i~~~~~------------------  120 (244)
                      +........+.++|+.++.+......+...+...+.-..++.. +.+..+..++..++..+.                  
T Consensus       120 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  198 (273)
T PF01943_consen  120 ILSSLSSVFSGLLQGLQRFKYIAISNIISSLLSLLLILLLLFL-GSSLWGFLLGLVISSLVSLIISLFYLRRKLRPRFSF  198 (273)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccc
Confidence            5778888999999999999999999999888887776666654 233666666666655554                  


Q ss_pred             HhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCc-hHHH
Q 036434          121 EIFPSTKEFSFFAHLSVVMFCLEWCSYEILVLLSGILPN-PKLE  163 (244)
Q Consensus       121 ~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~-~~la  163 (244)
                      ++++..|+++|.+.|..............|..+++++.. ++++
T Consensus       199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ii~~~~g~~~vg  242 (273)
T PF01943_consen  199 FSKKFFKEILRFGLPLFLSSLLSWLYSQIDRLIIGYFLGPEAVG  242 (273)
T ss_pred             cchHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCCHHHHH
Confidence            135678999999999999999999999999999999744 4443

The family includes RfbX part of the O antigen biosynthesis operon [], and SpoVB from Bacillus subtilis (Q00758 from SWISSPROT), which is involved in spore cortex biosynthesis [].; GO: 0000271 polysaccharide biosynthetic process, 0016020 membrane

>PF13440 Polysacc_synt_3: Polysaccharide biosynthesis protein

Probab=98.29  E-value=0.0008  Score=54.78  Aligned_cols=116  Identities=20%  Similarity=0.113  Sum_probs=87.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhcChhhHHHHHHHHHHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHH------
Q 036434           47 ACNYAIWLILTLFGYAILRSLSHNLQAQSLILALFLSSCATLCLQILLCWVLVSKTDFGNTGAELTIGISYWFN------  120 (244)
Q Consensus        47 a~~yl~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~n~~l~~~~i~~~~~G~~G~a~at~i~~~~~------  120 (244)
                      ...++....+..+.....+..++.++++++.+................-..+... +.+..+..++..++....      
T Consensus        90 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~  168 (251)
T PF13440_consen   90 LFWLLLLLALAIFFSALSQLFRSILRARGRFRAYALIDIVRSLLRLLLLVLLLYL-GLNLWSILLAFIISALLALLISFY  168 (251)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHHHH-HhhHHHHHHHHHHHHHHHHHHHHH
Confidence            4456777778888999999999999999999999999999888874444444332 336666666666665544      


Q ss_pred             --------HhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CCchHHH
Q 036434          121 --------EIFPSTKEFSFFAHLSVVMFCLEWCSYEILVLLSGI-LPNPKLE  163 (244)
Q Consensus       121 --------~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~-~g~~~la  163 (244)
                              +.....++.+|.+.|........+.....+..+++. +|.++++
T Consensus       169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~~~g  220 (251)
T PF13440_consen  169 LLRRKLRLSFKFSWRRLLKYGLPFSLSSLLSWLLSQIDRLLIGYFLGPEAVG  220 (251)
T ss_pred             HhccccCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHH
Confidence                    111223458999999999999999999999999999 7776665

>COG2244 RfbX Membrane protein involved in the export of O-antigen and teichoic acid [General function prediction only]

Probab=98.27  E-value=0.0001  Score=66.32  Aligned_cols=109  Identities=21%  Similarity=0.241  Sum_probs=91.9

Q ss_pred             CchhhHHHHHHHHHHHHHHHHHHHH-HHHhHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhhH
Q 036434            1 QYQKIGTYTYPAMFFCIAICIPISV-LWIFMDKVLILLGQDPDFFVEACNYAIWLILTLFGYAILRSLSHNLQAQSLILA   79 (244)
Q Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~il~~l~~~~~v~~~a~~yl~~~~~~~~~~~~~~~~~~~l~~~g~~~~   79 (244)
                      |+++.++..++.+.....+++|... +..+++++...+..++..  .+...+++..++.++..........+++.|+++.
T Consensus       285 ~~~~~~~~~~~~~~~~~~~~~p~~~~l~~~~~~~i~~~fg~~~~--~~~~~l~il~~~~~~~~~~~~~~~~l~~~g~~~~  362 (480)
T COG2244         285 DRKALKKLLRQSLKLLLLISIPALLGLLLLAPPIITLLFGEKYA--SAAPILQLLALAGLFLSLVSLTSSLLQALGKQRL  362 (480)
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhheeecCCccc--chhHHHHHHHHHHHHHHHHHHHHHHHHHcCcchh
Confidence            3566778999999999999999776 567788888765443321  2788889999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhcCCCcchHHHHH
Q 036434           80 LFLSSCATLCLQILLCWVLVSKTDFGNTGAELTI  113 (244)
Q Consensus        80 ~~~~~~~~~~~n~~l~~~~i~~~~~G~~G~a~at  113 (244)
                      .+..+..+.+.|.++|+.++..  .|..|++.++
T Consensus       363 ~~~~~~~~~i~~~~l~~~li~~--~g~~g~~~a~  394 (480)
T COG2244         363 LLLISLISALLNLILNLLLIPR--FGLIGAAIAT  394 (480)
T ss_pred             hHHHHHHHHHHHHHHHhHHHHh--hhhhhHHHHH
Confidence            9999999999999999999876  5677777777

>KOG1347 consensus Uncharacterized membrane protein, predicted efflux pump [General function prediction only]

Probab=98.08  E-value=4.2e-05  Score=68.80  Aligned_cols=119  Identities=14%  Similarity=0.098  Sum_probs=97.8

Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHH--H--HhhhH-H---HHHHHHhhhcCCCchh
Q 036434          123 FPSTKEFSFFAHLSVVMFCLEWCSYEILVLLSGILPNPKLETSVLTIWY--L--YRNPP-L---CSTRVANELGAGNPEP  194 (244)
Q Consensus       123 ~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~la~~~~~i~~--~--~~~~~-~---~~~~v~~~~G~~~~~~  194 (244)
                      +++.|+..+++.|.......+.....+.+.++||+|+.++|+...+...  .  +.+-. +   ..++.||..|+++++.
T Consensus        24 ~~e~k~l~~ia~P~i~~~~~~~~~~~is~~f~GhlG~leLaa~sla~s~~n~~~~s~~~gl~~aletlcgQa~ga~~~~~  103 (473)
T KOG1347|consen   24 VTESKELARLALPAILTFLAQPLLSLVSTAFAGHLGNLELASVSLANSFANITGVSILLGLQLALDTLCGQAFGAKKFTA  103 (473)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhhccccchHHHHHHHHHHhhcccchHHhhccchhhhcchHhhhcccccch
Confidence            4678999999999999999999999999999999999988865444422  2  22222 2   8899999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhcccchhccccCchhHHHHhhccc
Q 036434          195 TRLSTCVVIFLAVAEAAIGSVALFCCRNVLAYLFNTDKDVVNYVSELV  242 (244)
Q Consensus       195 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~lft~~~~v~~~~~~~l  242 (244)
                      ...+.+++..+-...+.....+. .+.+++...++.||++.+.+..|.
T Consensus       104 lg~~lqrs~~~l~~~~~~~~~l~-~~~~~il~~lgq~~~i~~~a~~y~  150 (473)
T KOG1347|consen  104 LGVYLQRSGIVLLVQGLPISLLI-LNSEPILLLLGQDPDISRDAGSYA  150 (473)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHH-HccHHHHHHhCCChhHHHHHhhhH
Confidence            99999999888887777776654 455999999999999988877654

>PF07260 ANKH: Progressive ankylosis protein (ANKH); InterPro: IPR009887 This family consists of several progressive ankylosis protein (ANK or ANKH) sequences

Probab=97.38  E-value=0.067  Score=45.24  Aligned_cols=126  Identities=16%  Similarity=0.085  Sum_probs=93.2

Q ss_pred             HHcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhhHHHHHHHHHHHHHHHHHHHHHhh-cC------CCcc
Q 036434           35 ILLGQDPDFFVEACNYAIWLILTLFGYAILRSLSHNLQAQSLILALFLSSCATLCLQILLCWVLVSK-TD------FGNT  107 (244)
Q Consensus        35 ~~l~~~~~v~~~a~~yl~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~n~~l~~~~i~~-~~------~G~~  107 (244)
                      ..++.||++.+.+++-+.++.+.=++..+...+++.+--+.++......++...+..+++...++.. ++      .|+.
T Consensus       116 ~lhgVs~~va~~tr~a~l~L~llPfl~alr~~~qGILik~r~s~iV~~aSI~~v~~qvV~v~~ll~~~l~~~~pllipil  195 (345)
T PF07260_consen  116 DLHGVSPSVAEKTRRAFLYLTLLPFLDALRWIHQGILIKHRHSWIVGSASIADVIAQVVLVAILLSMHLEPQDPLLIPIL  195 (345)
T ss_pred             HHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhhccceeEeehHHHHHHHHHHHHHHHHHccccCccccHHHHHH
Confidence            5779999999999999999998777889999999999888888887777777777777766666633 11      2222


Q ss_pred             hHHHHH-------HHHHHHH-------------HhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CCch
Q 036434          108 GAELTI-------GISYWFN-------------EIFPSTKEFSFFAHLSVVMFCLEWCSYEILVLLSGI-LPNP  160 (244)
Q Consensus       108 G~a~at-------~i~~~~~-------------~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~-~g~~  160 (244)
                      |.-.+.       .+++|..             .+...++++++..+|.+.....+..+--+.+.+++| +|..
T Consensus       196 ~~y~g~~vr~t~v~LGy~~~i~~~~p~~~~~~~~~~~tl~~~l~F~~PL~~~~~tq~~SrplVnl~vsR~l~gs  269 (345)
T PF07260_consen  196 ALYAGIAVRFTIVCLGYYQSIHDIIPQLSGLEKGDSATLQRMLKFWWPLALVLATQRISRPLVNLFVSRDLSGS  269 (345)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhccccCCcccCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCc
Confidence            221111       2233333             122458899999999999999999999999999999 5554

The ANK protein spans the outer cell membrane and shuttles inorganic pyrophosphate (PPi), a major inhibitor of physiologic and pathologic calcification, bone mineralisation and bone resorption []. Mutations in ANK are thought to give rise to Craniometaphyseal dysplasia (CMD) which is a rare skeletal disorder characterised by progressive thickening and increased mineral density of craniofacial bones and abnormally developed metaphyses in long bones [].; GO: 0015114 phosphate ion transmembrane transporter activity, 0035435 phosphate ion transmembrane transport, 0016021 integral to membrane

>PF04506 Rft-1: Rft protein; InterPro: IPR007594 Asymmetric lipid distribution is a fundamental characteristic of biological lipid bilayers, one such axample is the translocation of the Man5GlcNAc2-PP-Dol intermediate from the cytosolic side of the ER membrane to the lumen before the completion of the biosynthesis of Glc3Man9GlcNAc2-PP-Dol []

Probab=95.75  E-value=0.44  Score=43.97  Aligned_cols=117  Identities=13%  Similarity=-0.017  Sum_probs=83.8

Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHH-HhHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhhHHH
Q 036434            3 QKIGTYTYPAMFFCIAICIPISVLW-IFMDKVLILLGQDPDFFVEACNYAIWLILTLFGYAILRSLSHNLQAQSLILALF   81 (244)
Q Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~il~~l~~~~~v~~~a~~yl~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~   81 (244)
                      ++..+.+...+.+...+|+.+..+- ..++.++++++.+.=..+.+.+-++++..-+|+++++.++-++.++..+++-..
T Consensus       339 ~~~~~~l~~ll~~~~~~gl~~~~fG~~~s~~lL~~~~g~~w~~~~~~~~l~~yc~yi~~la~NGi~EaF~~s~a~~~~l~  418 (549)
T PF04506_consen  339 KQAANVLSNLLKFYLYLGLVIVAFGPPYSPLLLRLLGGSRWSSTSAPSLLRAYCYYIPFLAINGITEAFVFSVASESQLD  418 (549)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhChhhHHHHHHHHhhhcccCCCchHHHHHHHHHHHHHHHccHHHHHHHHhCCHHHHH
Confidence            4566777777788888887766653 457777877753222222346667777788889999999999999987766555


Q ss_pred             H---HHHHHHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHH
Q 036434           82 L---SSCATLCLQILLCWVLVSKTDFGNTGAELTIGISYWFN  120 (244)
Q Consensus        82 ~---~~~~~~~~n~~l~~~~i~~~~~G~~G~a~at~i~~~~~  120 (244)
                      .   .+.+..++.+..+|+|+.. ++|..|.-+|.++...+-
T Consensus       419 ~~~~~m~~~S~~f~~~~~~l~~~-~~G~~GlI~AN~iNM~lR  459 (549)
T PF04506_consen  419 RYNYWMVVFSAIFLAASYLLTRW-GLGAVGLILANCINMSLR  459 (549)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhc-cCCCchHHHHHHHHHHHH
Confidence            4   3344446667788999987 799999999888776665

RFT1 encodes an evolutionarily conserved protein required for this translocation.; GO: 0005319 lipid transporter activity, 0006869 lipid transport, 0016021 integral to membrane

>KOG2864 consensus Nuclear division RFT1 protein [Cell cycle control, cell division, chromosome partitioning]

Probab=94.81  E-value=0.69  Score=41.19  Aligned_cols=117  Identities=17%  Similarity=0.034  Sum_probs=85.4

Q ss_pred             chhhHHHHHHHHHHHHHHHHHHHHHHH-hHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhhHH
Q 036434            2 YQKIGTYTYPAMFFCIAICIPISVLWI-FMDKVLILLGQDPDFFVEACNYAIWLILTLFGYAILRSLSHNLQAQSLILAL   80 (244)
Q Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~il~~l~~~~~v~~~a~~yl~~~~~~~~~~~~~~~~~~~l~~~g~~~~~   80 (244)
                      .++..+++...+.....+|+.++.+-. .++..+.+.|.+.=....+..-+++++..+|+..+..+.-+++.+.++.+-.
T Consensus       318 ~k~a~~vL~~lLklv~~igli~~~FG~~YS~~vL~lygG~kwss~~~~~lL~~YclYI~~lAiNGitEaF~~A~~t~~qi  397 (530)
T KOG2864|consen  318 VKKAVDVLSNLLKLVIYIGLIFITFGPAYSYVVLLLYGGSKWSSGGGSLLLSWYCLYIPFLAINGITEAFAFAVATSRQI  397 (530)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhcCccccHHHHHHHcCccccCCCchHHHHHHHHHHHHHHhccHHHHHHHHhccHHHH
Confidence            455566666777777777766555533 4667777776544344456688899999999999999999999998776655


Q ss_pred             HH---HHHHHHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHH
Q 036434           81 FL---SSCATLCLQILLCWVLVSKTDFGNTGAELTIGISYWFN  120 (244)
Q Consensus        81 ~~---~~~~~~~~n~~l~~~~i~~~~~G~~G~a~at~i~~~~~  120 (244)
                      --   .+++..++..+++|+++..  +|..|--+|.++.....
T Consensus       398 ~~~n~~mlafSviflilsylL~~~--~~~~GlIlANiiNm~lR  438 (530)
T KOG2864|consen  398 DKHNKFMLAFSVIFLILSYLLIRW--FGLVGLILANIINMSLR  438 (530)
T ss_pred             HhcccchhHHHHHHHHHHHHHHHH--hchhHHHHHHHHHHHHH
Confidence            43   5566667889999999988  56688888887766654

>PF07260 ANKH: Progressive ankylosis protein (ANKH); InterPro: IPR009887 This family consists of several progressive ankylosis protein (ANK or ANKH) sequences

Probab=88.31  E-value=12  Score=32.08  Aligned_cols=115  Identities=12%  Similarity=-0.039  Sum_probs=64.1

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchHHH-HHHHHHHHHHhhhH-H-----HHHHHHhhhcCCCchhHH
Q 036434          124 PSTKEFSFFAHLSVVMFCLEWCSYEILVLLSGILPNPKLE-TSVLTIWYLYRNPP-L-----CSTRVANELGAGNPEPTR  196 (244)
Q Consensus       124 ~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~la-~~~~~i~~~~~~~~-~-----~~~~v~~~~G~~~~~~a~  196 (244)
                      .+.+++.+.-+|.+++...-..+=.+.+.-+++-.|++.. .+.+++.  +.+.. +     ..--+|-.+++++++  |
T Consensus         8 ~~y~~li~F~iPLa~ts~~~dl~~qiiNagLAr~~e~~vetLAsfglA--~sL~lf~~sp~~~~~~igl~~V~s~rs--r   83 (345)
T PF07260_consen    8 TSYWPLIRFFIPLAITSLAMDLGEQIINAGLARVQEDPVETLASFGLA--YSLMLFFASPLSMFHHIGLVFVNSKRS--R   83 (345)
T ss_pred             chHHHHHHHHHHHHHHHHHHhccHHHHHHHHhhccchHHHHHHHHHHH--HHHHHHHhChhhhhHHHHHHHhcchhh--h
Confidence            5678889999999998887777777888888876565432 2344442  22222 2     222233345555444  4


Q ss_pred             HHHHHHHHHHHHHHHHH-HHHH-Hhcccch-hccccCchhHHHHhhccc
Q 036434          197 LSTCVVIFLAVAEAAIG-SVAL-FCCRNVL-AYLFNTDKDVVNYVSELV  242 (244)
Q Consensus       197 ~~~~~~~~~~~~~~~~~-~~~~-~~~~~~i-~~lft~~~~v~~~~~~~l  242 (244)
                      +....++..+.++..++ .++. -.+.+.+ -.++..||++.+.++..+
T Consensus        84 r~~vl~~~vag~v~avi~~LIa~TpLG~~li~~lhgVs~~va~~tr~a~  132 (345)
T PF07260_consen   84 RKAVLCMAVAGAVAAVIHLLIAWTPLGNYLINDLHGVSPSVAEKTRRAF  132 (345)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHhCCCHHHHHHHHHHH
Confidence            44444444333333322 2222 2233333 357788999988877643

The ANK protein spans the outer cell membrane and shuttles inorganic pyrophosphate (PPi), a major inhibitor of physiologic and pathologic calcification, bone mineralisation and bone resorption []. Mutations in ANK are thought to give rise to Craniometaphyseal dysplasia (CMD) which is a rare skeletal disorder characterised by progressive thickening and increased mineral density of craniofacial bones and abnormally developed metaphyses in long bones [].; GO: 0015114 phosphate ion transmembrane transporter activity, 0035435 phosphate ion transmembrane transport, 0016021 integral to membrane

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	244
3mkt_A	460	Multi antimicrobial extrusion protein (Na(+)/drug	2e-28

>3mkt_A Multi antimicrobial extrusion protein (Na(+)/drug antiporter) MATE-like MDR efflux...; multidrug transporter, cation-bound, transport protein; 3.65A {Vibrio cholerae} PDB: 3mku_A Length = 460

 Score =  110 bits (278), Expect = 2e-28
 Identities = 44/279 (15%), Positives = 88/279 (31%), Gaps = 36/279 (12%)

Query: 1   QYQKIGTYTYPAMFFCIAICIPISVLWIFMDKVLILLGQDPDFFVEACNYAIWLILTLFG 60
           +  KI    +  +   + + +PI  +      ++  +  +     +   Y   +I  +  
Sbjct: 83  RQHKIPFEVHQGLILALLVSVPIIAVLFQTQFIIRFMDVEEAMATKTVGYMHAVIFAVPA 142

Query: 61  YAILRSLSHNLQAQSLILALFLSSCATLCLQILLCWVLV----SKTDFGNTGAELTIGIS 116
           Y + ++L       SL     +     L L I L W+ V       + G  G  +   I 
Sbjct: 143 YLLFQALRSFTDGMSLTKPAMVIGFIGLLLNIPLNWIFVYGKFGAPELGGVGCGVATAIV 202

Query: 117 YWFNEIF--------PSTKEFSFFAHLS-----------------VVMFCLEWCSYEILV 151
           YW   +                 F                           E   + ++ 
Sbjct: 203 YWIMLLLLLFYIVTSKRLAHVKVFETFHKPQPKELIRLFRLGFPVAAALFFEVTLFAVVA 262

Query: 152 LLSGILPNPKL--ETSVLTIWYLYRNPPL-----CSTRVANELGAGNPEPTRLSTCVVIF 204
           LL   L +  +      L    L    P+      S RV ++LG  + +   ++  V + 
Sbjct: 263 LLVAPLGSTVVAAHQVALNFSSLVFMFPMSIGAAVSIRVGHKLGEQDTKGAAIAANVGLM 322

Query: 205 LAVAEAAIGSVALFCCRNVLAYLFNTDKDVVNYVSELVP 243
             +A A I ++     R  +A L+  ++ VV    +L+ 
Sbjct: 323 TGLATACITALLTVLFREQIALLYTENQVVVALAMQLLL 361

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	244
3mkt_A	460	Multi antimicrobial extrusion protein (Na(+)/drug	99.96
3mkt_A	460	Multi antimicrobial extrusion protein (Na(+)/drug	99.37

>3mkt_A Multi antimicrobial extrusion protein (Na(+)/drug antiporter) MATE-like MDR efflux...; multidrug transporter, cation-bound, transport protein; 3.65A {Vibrio cholerae} PDB: 3mku_A

Probab=99.96  E-value=2.3e-29  Score=222.37  Aligned_cols=243  Identities=17%  Similarity=0.298  Sum_probs=217.6

Q ss_pred             CchhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhhHH
Q 036434            1 QYQKIGTYTYPAMFFCIAICIPISVLWIFMDKVLILLGQDPDFFVEACNYAIWLILTLFGYAILRSLSHNLQAQSLILAL   80 (244)
Q Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~l~~~~~v~~~a~~yl~~~~~~~~~~~~~~~~~~~l~~~g~~~~~   80 (244)
                      |+|+.++.+++++.+..+++++..++..+.++++.+++.|+|+.+.+..|+++..++.|+..+....++++|++||++.+
T Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~~~~~~~  162 (460)
T 3mkt_A           83 RQHKIPFEVHQGLILALLVSVPIIAVLFQTQFIIRFMDVEEAMATKTVGYMHAVIFAVPAYLLFQALRSFTDGMSLTKPA  162 (460)
T ss_dssp             STTTHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSCSSTTHHHHHHHHHHTTGGGHHHHHHHHHHHTTTTCTTSCCTTT
T ss_pred             ChhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHH
Confidence            57889999999999999999997777778899999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHhh-c---CCCcchHHHHHHHHHHHH-------------------------HhhhhHHHHHH
Q 036434           81 FLSSCATLCLQILLCWVLVSK-T---DFGNTGAELTIGISYWFN-------------------------EIFPSTKEFSF  131 (244)
Q Consensus        81 ~~~~~~~~~~n~~l~~~~i~~-~---~~G~~G~a~at~i~~~~~-------------------------~~~~~~~~~~~  131 (244)
                      ++..+++.++|+++|++++++ +   ++|+.|+++|+.+++++.                         ++++.+|+++|
T Consensus       163 ~~~~~~~~~~~i~l~~~li~~~~~~p~~g~~g~a~a~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  242 (460)
T 3mkt_A          163 MVIGFIGLLLNIPLNWIFVYGKFGAPELGGVGCGVATAIVYWIMLLLLLFYIVTSKRLAHVKVFETFHKPQPKELIRLFR  242 (460)
T ss_dssp             HHHHHHHHHHHHHHHHHHHSCCTTCCCCHHHHHHHHHHHHHHHHHHHHHHHHHTCSSCCCCCCSCCCCSSTTSSTTTSHH
T ss_pred             HHHHHHHHHHHHHHHHHHHcCCCCCcccchhhHHHHHHHHHHHHHHHHHHHHHhCcchhhhhhhhcccccCHHHHHHHHH
Confidence            999999999999999999986 4   699999999999998876                         02345789999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHH---HHhhhH-H---HHHHHHhhhcCCCchhHHHHHHHHHH
Q 036434          132 FAHLSVVMFCLEWCSYEILVLLSGILPNPKLETSVLTIWY---LYRNPP-L---CSTRVANELGAGNPEPTRLSTCVVIF  204 (244)
Q Consensus       132 ~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~la~~~~~i~~---~~~~~~-~---~~~~v~~~~G~~~~~~a~~~~~~~~~  204 (244)
                      .+.|..+++..+...+.+++.+++++|++++++.......   .++++. +   .++++++++|+||+|++|+..+.+..
T Consensus       243 ~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~va~~~i~~~i~~~~~~~~~~~~~a~~p~i~~~~g~~~~~~~~~~~~~~~~  322 (460)
T 3mkt_A          243 LGFPVAAALFFEVTLFAVVALLVAPLGSTVVAAHQVALNFSSLVFMFPMSIGAAVSIRVGHKLGEQDTKGAAIAANVGLM  322 (460)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHTCTTSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCCCTTTTHHHHHHH
T ss_pred             HhhHHHHHHHHHHHHHHHHHHHHHHcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence            9999999999999999999999999999887754322222   344444 4   89999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHhcccchhccccCchhHHHHhhcccC
Q 036434          205 LAVAEAAIGSVALFCCRNVLAYLFNTDKDVVNYVSELVP  243 (244)
Q Consensus       205 ~~~~~~~~~~~~~~~~~~~i~~lft~~~~v~~~~~~~l~  243 (244)
                      .+..+++..++.+.++++++.++|++|+++.+.+.++++
T Consensus       323 ~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~l~  361 (460)
T 3mkt_A          323 TGLATACITALLTVLFREQIALLYTENQVVVALAMQLLL  361 (460)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHTCSSCCSTTHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence            999999999999999999999999999998888777664

>3mkt_A Multi antimicrobial extrusion protein (Na(+)/drug antiporter) MATE-like MDR efflux...; multidrug transporter, cation-bound, transport protein; 3.65A {Vibrio cholerae} PDB: 3mku_A

Probab=99.37  E-value=8.2e-12  Score=109.78  Aligned_cols=120  Identities=12%  Similarity=0.106  Sum_probs=112.4

Q ss_pred             CchhhHHHHHHHHHHHHHHHHHHHH-HHHhHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhhH
Q 036434            1 QYQKIGTYTYPAMFFCIAICIPISV-LWIFMDKVLILLGQDPDFFVEACNYAIWLILTLFGYAILRSLSHNLQAQSLILA   79 (244)
Q Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~il~~l~~~~~v~~~a~~yl~~~~~~~~~~~~~~~~~~~l~~~g~~~~   79 (244)
                      |+||.++..++++.....++++.++ +..+.+++.+++..|+|+.+.+..++++.+++.++..+.....+.+++.||+|.
T Consensus       309 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~g~~~~  388 (460)
T 3mkt_A          309 DTKGAAIAANVGLMTGLATACITALLTVLFREQIALLYTENQVVVALAMQLLLFAAIYQCMDAVQVVAAGSLRGYKDMTA  388 (460)
T ss_dssp             CCCTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSSCCSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGSTHHH
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchHH
Confidence            6789999999999999999999776 567889999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHH-HHHHHHHHHHHhh----cC-CCcchHHHHHHHHHHHH
Q 036434           80 LFLSSCATL-CLQILLCWVLVSK----TD-FGNTGAELTIGISYWFN  120 (244)
Q Consensus        80 ~~~~~~~~~-~~n~~l~~~~i~~----~~-~G~~G~a~at~i~~~~~  120 (244)
                      +++.++.+. ++|++++++++..    ++ +|+.|+++|+.+++.+.
T Consensus       389 ~~~~~~~~~~~~~i~l~~~l~~~~~~~~~~~G~~G~~~a~~~~~~~~  435 (460)
T 3mkt_A          389 IFHRTFISYWVLGLPTGYILGMTNWLTEQPLGAKGFWLGFIIGLSAA  435 (460)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHTSSCCSSHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhhccccccCchhHHHHHHHHHHHH
Confidence            999999998 9999999999987    67 99999999999998876

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Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00