Citrus Sinensis ID: 036440
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
ID ![]() | Alignment graph ![]() | Length ![]() |
Definition ![]() |
RBH(Q2H) ![]() |
RBH(H2Q) ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 181 | 2.2.26 [Sep-21-2011] | |||||||
| B6VJS4 | 357 | Trans-resveratrol di-O-me | no | no | 0.779 | 0.394 | 0.337 | 5e-22 | |
| Q84KK5 | 357 | Isoflavone 7-O-methyltran | N/A | no | 0.966 | 0.490 | 0.348 | 2e-21 | |
| Q84KK4 | 365 | Isoflavone 4'-O-methyltra | N/A | no | 0.773 | 0.383 | 0.320 | 7e-21 | |
| O22309 | 352 | Isoflavone-7-O-methyltran | N/A | no | 0.928 | 0.477 | 0.336 | 2e-20 | |
| O24529 | 352 | Isoflavone-7-O-methyltran | N/A | no | 0.928 | 0.477 | 0.336 | 3e-20 | |
| O22308 | 352 | Isoflavone-7-O-methyltran | N/A | no | 0.928 | 0.477 | 0.336 | 3e-20 | |
| Q84KK6 | 367 | Isoflavone 4'-O-methyltra | N/A | no | 0.773 | 0.381 | 0.316 | 8e-18 | |
| C6TAY1 | 358 | Flavonoid 4'-O-methyltran | no | no | 0.939 | 0.474 | 0.313 | 1e-17 | |
| O24305 | 360 | 6a-hydroxymaackiain methy | N/A | no | 0.773 | 0.388 | 0.298 | 1e-17 | |
| P0DH60 | 360 | 6a-hydroxymaackiain methy | N/A | no | 0.773 | 0.388 | 0.298 | 2e-17 |
| >sp|B6VJS4|ROMT_VITVI Trans-resveratrol di-O-methyltransferase OS=Vitis vinifera GN=ROMT PE=1 SV=2 | Back alignment and function desciption |
|---|
Score = 103 bits (258), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 78/231 (33%), Positives = 97/231 (41%), Gaps = 90/231 (38%)
Query: 1 FNQAVASDTQTVTASLALKYCKQIFERLGSLVDVG------------AFPCVKCTEFDQP 48
FN+A+ASD + +T+ L LK + +F L SLVDVG AFP + CT D
Sbjct: 167 FNEAMASDARLLTSVL-LKEGQGVFAGLNSLVDVGGGTGKVAKAIANAFPHLNCTVLDLS 225
Query: 49 HVVANLLDTNNLKYLADDFFQSIPPVCMIPLRLGYSHIKIMIAFFIRLVVGRGRLHIFSW 108
HVVA L + NL Y A D F++IPP I L+ W
Sbjct: 226 HVVAGLQGSKNLNYFAGDMFEAIPPADAILLK---------------------------W 258
Query: 109 LNFMKRVINMQIIIHVFGDEESVKILKICREAITSK------------------------ 144
I+H + +EE VKILK CREAI SK
Sbjct: 259 ------------ILHDWSNEECVKILKRCREAIPSKENGGKVIIIDMIMMKNQGDYKSTE 306
Query: 145 --------------AKLSTEKELESLFVEVHFHHYKITPLFGLPSLIEVYP 181
+ E E E LF++ F HYKITP+ GL SLIEVYP
Sbjct: 307 TQLFFDMTMMIFAPGRERDENEWEKLFLDAGFSHYKITPILGLRSLIEVYP 357
|
Catalyzes the biosynthesis of pterostilbene from resveratrol. Pterostilbene has both antifungal and pharmacological properties. Also has activity toward resveratrol monomethyl ether (RME). Vitis vinifera (taxid: 29760) EC: 2EC: .EC: 1EC: .EC: 1EC: .EC: 2EC: 4EC: 0 |
| >sp|Q84KK5|D7OMT_GLYEC Isoflavone 7-O-methyltransferase OS=Glycyrrhiza echinata GN=D7OMT PE=1 SV=1 | Back alignment and function description |
|---|
Score = 101 bits (252), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 68/195 (34%), Positives = 102/195 (52%), Gaps = 20/195 (10%)
Query: 1 FNQAVASDTQTVTASLALKYCKQIFERLGSLVDVGA------------FPCVKCTEFDQP 48
FN A+ASD+Q + +LAL+ C FE + S+VDVG FP +KC FD+P
Sbjct: 169 FNDAMASDSQMI--NLALRDCNSGFEGVESIVDVGGGIGTTAKIICDTFPNLKCIVFDRP 226
Query: 49 HVVANLLDTNNLKYLADDFFQSIPPVCMIPLRLGYSHIKIMIAFFIRLVVGRGRLHIFSW 108
VV NL TNNL Y+ D FQS+P + L+ + R ++ + + + S
Sbjct: 227 KVVENLSGTNNLSYVGGDMFQSVPKADAVLLKWILHN---WTDNDCRRILEKCKEAVSS- 282
Query: 109 LNFMKRVINMQIIIHVFGDEESVKILKICREAITS--KAKLSTEKELESLFVEVHFHHYK 166
+VI ++++I+ DE + K+ + + K +E+E + LF+E F YK
Sbjct: 283 DGEKGKVIIIEMVINENQDEHEITGTKLLMDVNMACLNGKERSEEEWKKLFIEAGFRDYK 342
Query: 167 ITPLFGLPSLIEVYP 181
I+PL G SLIEVYP
Sbjct: 343 ISPLTGFLSLIEVYP 357
|
7-O-methyltransferase involved in the biosynthesis of isoformononetin. Can use daidzein as substrate, but not medicarpin or 2,7,4'-trihydroxyisoflavanone. Glycyrrhiza echinata (taxid: 46348) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: 1 EC: 5 EC: 0 |
| >sp|Q84KK4|I4OMT_LOTJA Isoflavone 4'-O-methyltransferase OS=Lotus japonicus GN=HI4'OMT PE=1 SV=1 | Back alignment and function description |
|---|
Score = 100 bits (248), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 74/231 (32%), Positives = 97/231 (41%), Gaps = 91/231 (39%)
Query: 1 FNQAVASDTQTVTASLALKYCKQIFERLGSLVDVG------------AFPCVKCTEFDQP 48
F +A+A+D+ LALK CK +FE LGSLVDV AFP VKCT FDQP
Sbjct: 176 FQEAMAADSHMF--KLALKECKHVFEGLGSLVDVAGGRGGVTKLIREAFPHVKCTVFDQP 233
Query: 49 HVVANLLDTNNLKYLADDFFQSIPPVCMIPLRLGYSHIKIMIAFFIRLVVGRGRLHIFSW 108
VVANL NL ++ D F+S+PP + L+ W
Sbjct: 234 QVVANLTGDENLNFVGGDMFKSVPPADAVLLK---------------------------W 266
Query: 109 LNFMKRVINMQIIIHVFGDEESVKILKICREAITSKAK-------------LSTEKELES 155
++H + DE S+KILK C+EAI+ + K S ++EL
Sbjct: 267 ------------VLHDWNDELSLKILKNCKEAISGRGKEGKVIIIDISIDETSDDRELTE 314
Query: 156 -------------------------LFVEVHFHHYKITPLFGLPSLIEVYP 181
L + F YKITP+ G SLIEV+P
Sbjct: 315 LKLDYDLVMLTMFNGKEREKKEWEKLIYDAGFSSYKITPICGFKSLIEVFP 365
|
2-hydroxyisoflavanone 4'-O-methyltransferase involved in the biosynthesis of formononetin. Can use 2,7,4'-trihydroxyisoflavanone as substrate, but not daidzein. Lotus japonicus (taxid: 34305) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: 2 EC: 1 EC: 2 |
| >sp|O22309|7OMT9_MEDSA Isoflavone-7-O-methyltransferase 9 OS=Medicago sativa PE=2 SV=1 | Back alignment and function description |
|---|
Score = 98.6 bits (244), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 68/202 (33%), Positives = 102/202 (50%), Gaps = 34/202 (16%)
Query: 1 FNQAVASDTQTVTASLALKYCKQIFERLGSLVDVGA------------FPCVKCTEFDQP 48
FN A+ASD++ + +LAL+ C +F+ L S+VDVG FP +KC FD+P
Sbjct: 164 FNDAMASDSKLI--NLALRDCDFVFDGLESIVDVGGGTGTTAKIICETFPKLKCIVFDRP 221
Query: 49 HVVANLLDTNNLKYLADDFFQSIPPVCMIPLRLGYSHIKIMIAFFIRLVVGRGRLHIF-- 106
VV NL +NNL Y+ D F SIP + +++ + + + L I
Sbjct: 222 QVVENLSGSNNLTYVGGDMFTSIP-----------NADAVLLKYILHNWTDKDCLRILKK 270
Query: 107 ---SWLNFMKR--VINMQIIIHVFGDEESVKILKICREAITS--KAKLSTEKELESLFVE 159
+ N KR V + ++I+ DE V +K+ + + K E+E + LF+E
Sbjct: 271 CKEAVTNDGKRGKVTIIDMVINEKKDENQVTQIKLLMDVNMACLNGKERNEEEWKKLFIE 330
Query: 160 VHFHHYKITPLFGLPSLIEVYP 181
F HYKI+PL G SLIE+YP
Sbjct: 331 AGFQHYKISPLTGFLSLIEIYP 352
|
Transfers a methyl group to 7-hydroxyls of the isoflavones daidzein, genistein and 6,7,4'-trihydroxyisoflavone. Can also methylate (+)6a-hydroxymaackiain with lower efficiency. Medicago sativa (taxid: 3879) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: 1 EC: 5 EC: 0 |
| >sp|O24529|7OMT8_MEDSA Isoflavone-7-O-methyltransferase 8 OS=Medicago sativa PE=1 SV=1 | Back alignment and function description |
|---|
Score = 97.8 bits (242), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 68/202 (33%), Positives = 101/202 (50%), Gaps = 34/202 (16%)
Query: 1 FNQAVASDTQTVTASLALKYCKQIFERLGSLVDVGA------------FPCVKCTEFDQP 48
FN A+ASD++ + +LAL+ C +F+ L S+VDVG FP +KC FD+P
Sbjct: 164 FNDAMASDSKLI--NLALRDCDFVFDGLESIVDVGGGTGTTAKIICETFPKLKCIVFDRP 221
Query: 49 HVVANLLDTNNLKYLADDFFQSIPPVCMIPLRLGYSHIKIMIAFFIRLVVGRGRLHIF-- 106
VV NL +NNL Y+ D F SIP + +++ + + + L I
Sbjct: 222 QVVENLSGSNNLTYVGGDMFTSIP-----------NADAVLLKYILHNWTDKDCLRILKK 270
Query: 107 ---SWLNFMKR--VINMQIIIHVFGDEESVKILKICREAITS--KAKLSTEKELESLFVE 159
+ N KR V + ++I DE V +K+ + + K E+E + LF+E
Sbjct: 271 CKEAVTNDGKRGKVTIIDMVIDKKKDENQVTQIKLLMDVNMACLNGKERNEEEWKKLFIE 330
Query: 160 VHFHHYKITPLFGLPSLIEVYP 181
F HYKI+PL G SLIE+YP
Sbjct: 331 AGFQHYKISPLTGFLSLIEIYP 352
|
Transfers a methyl group to 7-hydroxyls of the isoflavones daidzein, genistein and 6,7,4'-trihydroxyisoflavone. Can also methylate (+)6a-hydroxymaackiain with lower efficiency. Medicago sativa (taxid: 3879) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: 1 EC: 5 EC: 0 |
| >sp|O22308|7OMT6_MEDSA Isoflavone-7-O-methyltransferase 6 OS=Medicago sativa PE=2 SV=1 | Back alignment and function description |
|---|
Score = 97.8 bits (242), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 68/202 (33%), Positives = 101/202 (50%), Gaps = 34/202 (16%)
Query: 1 FNQAVASDTQTVTASLALKYCKQIFERLGSLVDVGA------------FPCVKCTEFDQP 48
FN A+ASD++ + +LAL+ C +F+ L S+VDVG FP +KC FD+P
Sbjct: 164 FNDAMASDSKLI--NLALRDCDFVFDGLESIVDVGGGTGTTAKIICETFPKLKCIVFDRP 221
Query: 49 HVVANLLDTNNLKYLADDFFQSIPPVCMIPLRLGYSHIKIMIAFFIRLVVGRGRLHIF-- 106
VV NL +NNL Y+ D F SIP + +++ + + + L I
Sbjct: 222 QVVENLSGSNNLTYVGGDMFTSIP-----------NADAVLLKYILHNWTDKDCLRILKK 270
Query: 107 ---SWLNFMKR--VINMQIIIHVFGDEESVKILKICREAITS--KAKLSTEKELESLFVE 159
+ N KR V + ++I DE V +K+ + + K E+E + LF+E
Sbjct: 271 CKEAVTNDGKRGKVTIIDMVIDEKKDENQVTQIKLLMDVNMACLNGKERNEEEWKKLFIE 330
Query: 160 VHFHHYKITPLFGLPSLIEVYP 181
F HYKI+PL G SLIE+YP
Sbjct: 331 AGFQHYKISPLTGFLSLIEIYP 352
|
Transfers a methyl group to 7-hydroxyls of the isoflavones daidzein, genistein and 6,7,4'-trihydroxyisoflavone. Can also methylate (+)6a-hydroxymaackiain with lower efficiency. Medicago sativa (taxid: 3879) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: 1 EC: 5 EC: 0 |
| >sp|Q84KK6|I4OMT_GLYEC Isoflavone 4'-O-methyltransferase OS=Glycyrrhiza echinata GN=HI4'OMT PE=1 SV=1 | Back alignment and function description |
|---|
Score = 90.1 bits (222), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 73/231 (31%), Positives = 96/231 (41%), Gaps = 91/231 (39%)
Query: 1 FNQAVASDTQTVTASLALKYCKQIFERLGSLVDVGA------------FPCVKCTEFDQP 48
F +A+A+D+Q LALK C+ +FE L SLVDVG FP +KCT FDQP
Sbjct: 178 FQEAMAADSQMF--KLALKECRHVFEGLESLVDVGGGTGGVTKLIHEEFPHLKCTVFDQP 235
Query: 49 HVVANLLDTNNLKYLADDFFQSIPPVCMIPLRLGYSHIKIMIAFFIRLVVGRGRLHIFSW 108
VV NL NLK++ D F+SIPP + L+ W
Sbjct: 236 QVVGNLSGNENLKFVGGDMFKSIPPADAVLLK---------------------------W 268
Query: 109 LNFMKRVINMQIIIHVFGDEESVKILKICREAITSKAK-------------LSTEKELES 155
++H + DE S+KILK +EAI+ K K S ++EL
Sbjct: 269 ------------VLHDWNDELSLKILKNSKEAISGKGKEGKVIIIDISIDEASGDRELTE 316
Query: 156 -------------------------LFVEVHFHHYKITPLFGLPSLIEVYP 181
L + F YKITP+ G SLIEV+P
Sbjct: 317 LQLDYDLVMLTMFNGKEREKKEWEKLISDAGFSSYKITPICGFKSLIEVFP 367
|
2-hydroxyisoflavanone 4'-O-methyltransferase involved in the biosynthesis of formononetin. Can use 2,7,4'-trihydroxyisoflavanone, (+)-6a-hydroxymaackiain or medicarpin as substrate, but not daidzein or (-)-6a-hydroxymaackiain. Glycyrrhiza echinata (taxid: 46348) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: 2 EC: 1 EC: 2 |
| >sp|C6TAY1|SOMT2_SOYBN Flavonoid 4'-O-methyltransferase OS=Glycine max PE=1 SV=1 | Back alignment and function description |
|---|
Score = 89.7 bits (221), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 63/201 (31%), Positives = 99/201 (49%), Gaps = 31/201 (15%)
Query: 1 FNQAVASDTQTVTASLALKYCKQIFERLGSLVDVG------------AFPCVKCTEFDQP 48
FN+A+A D+Q + +LA + C +FE L S+VDVG AFP +KC ++P
Sbjct: 169 FNEAMACDSQML--NLAFRDCNWVFEGLESIVDVGGGTGITAKIICEAFPKLKCMVLERP 226
Query: 49 HVVANLLDTNNLKYLADDFFQSIPPVCMIPLRL---GYSHIKIM--IAFFIRLVVGRGRL 103
+VV NL +NNL ++ D F+ IP + L+L ++ M + + G +
Sbjct: 227 NVVENLSGSNNLTFVGGDMFKCIPKADAVLLKLVLHNWNDNDCMKILENCKEAISGESK- 285
Query: 104 HIFSWLNFMKRVINMQIIIHVFGDEESVKILKICRE---AITSKAKLSTEKELESLFVEV 160
+V+ + +I+ DE V LK+ + A K E++ + LF+E
Sbjct: 286 --------TGKVVVIDTVINENKDERQVTELKLLMDVHMACIINGKERKEEDWKKLFMEA 337
Query: 161 HFHHYKITPLFGLPSLIEVYP 181
F YKI+P G SLIE+YP
Sbjct: 338 GFQSYKISPFTGYLSLIEIYP 358
|
S-adenosyl-L-methionine-dependent methyltransferase that catalyzes the 4'-methylation of naringenin (4',5,7-trihydroxyflavanone) into ponciretin (4'-methoxy-5,7-dihydroxyflavanone). In vitro, also able to convert apigenin, daidzein, genistein and quercetin into the 4'-O-methylated compounds acacetin, formononetin, biochanine A and 4'-methylated quercetin, respectively. Glycine max (taxid: 3847) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: 2 EC: 3 EC: 1 |
| >sp|O24305|M3OM1_PEA 6a-hydroxymaackiain methyltransferase 1 OS=Pisum sativum GN=HMM1 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 89.0 bits (219), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 69/231 (29%), Positives = 92/231 (39%), Gaps = 91/231 (39%)
Query: 1 FNQAVASDTQTVTASLALKYCKQIFERLGSLVDVG------------AFPCVKCTEFDQP 48
F A+A+D++ LA++ K +FE L SLVDV AFP +KCT FDQP
Sbjct: 171 FQDAMAADSRLF--KLAIQENKHVFEGLESLVDVAGGTGGVAKLIHEAFPHIKCTVFDQP 228
Query: 49 HVVANLLDTNNLKYLADDFFQSIPPVCMIPLRLGYSHIKIMIAFFIRLVVGRGRLHIFSW 108
VV NL NL ++ D F+S+P + L+ W
Sbjct: 229 QVVGNLTGNENLNFVGGDMFKSVPSADAVLLK---------------------------W 261
Query: 109 LNFMKRVINMQIIIHVFGDEESVKILKICREAITSKAKLS-------------------- 148
++H + DE S+KILK +EAI+ K K
Sbjct: 262 ------------VLHDWNDELSLKILKNSKEAISHKGKDGKVIIIDISIDENSDDRGLTE 309
Query: 149 ------------------TEKELESLFVEVHFHHYKITPLFGLPSLIEVYP 181
T+KE E L + F YKITP+ G SLIEVYP
Sbjct: 310 LQLEYDVVMLTMFLGKERTKKEWEKLIYDAGFSRYKITPICGFKSLIEVYP 360
|
Methyltransferase involved in the phytoalexin pisatin biosynthesis. Has both 3- and 4'-O-methyltransferase activities. Can use (+)-6a-hydroxymaackiain, 2,7,4'-trihydroxyisoflavanone and with much less activity (+)-medicarpin as substrates, but not (-)-6a-hydroxymaackiain, daidzein, formononetin or isoliquiritigenin. May be involved in formononetin biosynthesis. Pisum sativum (taxid: 3888) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: 4 EC: 6 |
| >sp|P0DH60|M3OM2_PEA 6a-hydroxymaackiain methyltransferase 2 OS=Pisum sativum GN=HMM2 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 89.0 bits (219), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 69/231 (29%), Positives = 93/231 (40%), Gaps = 91/231 (39%)
Query: 1 FNQAVASDTQTVTASLALKYCKQIFERLGSLVDVG------------AFPCVKCTEFDQP 48
F A+A+D++ LA++ K +FE L SLVDV AFP +KCT FDQP
Sbjct: 171 FQDAMAADSRLF--KLAIQENKHVFEGLESLVDVAGGTGGVAKLIHEAFPHIKCTVFDQP 228
Query: 49 HVVANLLDTNNLKYLADDFFQSIPPVCMIPLRLGYSHIKIMIAFFIRLVVGRGRLHIFSW 108
VV NL NL +++ D F+S+P + L+ W
Sbjct: 229 QVVGNLTGNENLNFVSGDMFKSVPSADAVLLK---------------------------W 261
Query: 109 LNFMKRVINMQIIIHVFGDEESVKILKICREAITSKAKLS-------------------- 148
++H + DE S+KILK +EAI+ K K
Sbjct: 262 ------------VLHDWNDELSLKILKKSKEAISHKGKDGKVIIIDISIDDNSDDHGLTE 309
Query: 149 ------------------TEKELESLFVEVHFHHYKITPLFGLPSLIEVYP 181
T+KE E L + F YKITP+ G SLIEVYP
Sbjct: 310 LQLEYDVVMLTMFLGKERTKKEWEKLIYDAGFSRYKITPICGFKSLIEVYP 360
|
3-O-methyltransferase involved in the phytoalexin pisatin biosynthesis. Can use (+)-6a-hydroxymaackiain, (+)-maackiain and with a lower activity (+)-medicarpin and 2,7,4'-trihydroxyisoflavanone as substrates, but not (-)-6a-hydroxymaackiain, daidzein, formononetin or isoliquiritigenin. Pisum sativum (taxid: 3888) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: - |
Close Homologs in the Non-Redundant Database Detected by BLAST 
Original result of BLAST against Nonredundant Database
GI ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 181 | ||||||
| 225443568 | 361 | PREDICTED: isoflavone-7-O-methyltransfer | 0.773 | 0.387 | 0.363 | 7e-26 | |
| 359483947 | 355 | PREDICTED: isoflavone-7-O-methyltransfer | 0.740 | 0.377 | 0.359 | 2e-24 | |
| 147816431 | 357 | hypothetical protein VITISV_020020 [Viti | 0.779 | 0.394 | 0.359 | 1e-23 | |
| 225446491 | 357 | PREDICTED: 8-hydroxyquercetin 8-O-methyl | 0.779 | 0.394 | 0.359 | 2e-23 | |
| 359485259 | 357 | PREDICTED: tabersonine 16-O-methyltransf | 0.779 | 0.394 | 0.359 | 3e-23 | |
| 147776504 | 323 | hypothetical protein VITISV_027590 [Viti | 0.779 | 0.436 | 0.359 | 3e-23 | |
| 302143370 | 278 | unnamed protein product [Vitis vinifera] | 0.779 | 0.507 | 0.359 | 3e-23 | |
| 359485261 | 357 | PREDICTED: tabersonine 16-O-methyltransf | 0.779 | 0.394 | 0.359 | 4e-23 | |
| 147865742 | 357 | hypothetical protein VITISV_005827 [Viti | 0.779 | 0.394 | 0.354 | 5e-23 | |
| 225446494 | 357 | PREDICTED: tabersonine 16-O-methyltransf | 0.779 | 0.394 | 0.354 | 7e-23 |
| >gi|225443568|ref|XP_002278092.1| PREDICTED: isoflavone-7-O-methyltransferase 9 isoform 1 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 122 bits (305), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 84/231 (36%), Positives = 103/231 (44%), Gaps = 91/231 (39%)
Query: 1 FNQAVASDTQTVTASLALKYCKQIFERLGSLVDVG------------AFPCVKCTEFDQP 48
FN+A+ASD++ + SL +K C+ +FE LGSLVDVG AFP +KCT FD P
Sbjct: 172 FNEAMASDSRMM--SLVIKDCRPVFEGLGSLVDVGGGKGLIARIISEAFPQLKCTVFDLP 229
Query: 49 HVVANLLDTNNLKYLADDFFQSIPPVCMIPLRLGYSHIKIMIAFFIRLVVGRGRLHIFSW 108
HVV+N + NLKY+ D FQS+P I L+L
Sbjct: 230 HVVSNFPECGNLKYVGGDMFQSVPTADAILLKL--------------------------- 262
Query: 109 LNFMKRVINMQIIIHVFGDEESVKILKICREAITSKAKLS-------------------- 148
++H DEE VKILK CREAI SK K
Sbjct: 263 ------------VLHSLSDEECVKILKKCREAIPSKEKGGKVIVIDIVINEKKEEHDITE 310
Query: 149 ------------------TEKELESLFVEVHFHHYKITPLFGLPSLIEVYP 181
EKE E LF+E F HYKI P+FGL SLIEV+P
Sbjct: 311 AKLLFDLLMMTVVTGRERNEKEWEKLFLEAGFSHYKINPIFGLRSLIEVFP 361
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|359483947|ref|XP_003633042.1| PREDICTED: isoflavone-7-O-methyltransferase 9 isoform 2 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 117 bits (292), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 83/231 (35%), Positives = 100/231 (43%), Gaps = 97/231 (41%)
Query: 1 FNQAVASDTQTVTASLALKYCKQIFERLGSLVDVG------------AFPCVKCTEFDQP 48
FN+A+ASD++ + SL +K C+ +FE LGSLVDVG AFP +KCT FD P
Sbjct: 172 FNEAMASDSRMM--SLVIKDCRPVFEGLGSLVDVGGGKGLIARIISEAFPQLKCTVFDLP 229
Query: 49 HVVANLLDTNNLKYLADDFFQSIPPVCMIPLRLGYSHIKIMIAFFIRLVVGRGRLHIFSW 108
HVV+N + NLKY+ D FQS+P I L+
Sbjct: 230 HVVSNFPECGNLKYVGGDMFQSVPTADAILLK---------------------------- 261
Query: 109 LNFMKRVINMQIIIHVFGDEESVKILKICREAITSKAKLS-------------------- 148
GDEE VKILK CREAI SK K
Sbjct: 262 -----------------GDEECVKILKKCREAIPSKEKGGKVIVIDIVINEKKEEHDITE 304
Query: 149 ------------------TEKELESLFVEVHFHHYKITPLFGLPSLIEVYP 181
EKE E LF+E F HYKI P+FGL SLIEV+P
Sbjct: 305 AKLLFDLLMMTVVTGRERNEKEWEKLFLEAGFSHYKINPIFGLRSLIEVFP 355
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|147816431|emb|CAN61955.1| hypothetical protein VITISV_020020 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 114 bits (286), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 83/231 (35%), Positives = 100/231 (43%), Gaps = 90/231 (38%)
Query: 1 FNQAVASDTQTVTASLALKYCKQIFERLGSLVDVG------------AFPCVKCTEFDQP 48
FN+A+ASD + VT+ L +K CK +FE L SLVDVG AFP + CT FD P
Sbjct: 167 FNEAMASDARLVTSXL-IKDCKGVFEGLNSLVDVGGGTGTVAKAIANAFPHLNCTVFDLP 225
Query: 49 HVVANLLDTNNLKYLADDFFQSIPPVCMIPLRLGYSHIKIMIAFFIRLVVGRGRLHIFSW 108
HVVA L + NL YL D F+ IPP I L+ W
Sbjct: 226 HVVAGLEGSKNLNYLGGDMFKGIPPADAILLK---------------------------W 258
Query: 109 LNFMKRVINMQIIIHVFGDEESVKILKICREAITSKAKLS-------------------- 148
I+H + DEE VKIL+ CR+AI SK K
Sbjct: 259 ------------ILHDWNDEECVKILQQCRQAIPSKEKGGKVIIIDMMMENQKGDDESME 306
Query: 149 ------------------TEKELESLFVEVHFHHYKITPLFGLPSLIEVYP 181
EKE E LF++ F YKITP+ GL SLIEVYP
Sbjct: 307 TQLFFDMLMMILVTGQERNEKEWEKLFLDAGFSGYKITPILGLRSLIEVYP 357
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|225446491|ref|XP_002278211.1| PREDICTED: 8-hydroxyquercetin 8-O-methyltransferase [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 114 bits (285), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 83/231 (35%), Positives = 100/231 (43%), Gaps = 90/231 (38%)
Query: 1 FNQAVASDTQTVTASLALKYCKQIFERLGSLVDVG------------AFPCVKCTEFDQP 48
FN+A+ASD + VT+ L +K CK +FE L SLVDVG AFP + CT FD P
Sbjct: 167 FNEAMASDARLVTSVL-IKDCKGVFEGLNSLVDVGGGTGTVAKAIANAFPHLNCTVFDLP 225
Query: 49 HVVANLLDTNNLKYLADDFFQSIPPVCMIPLRLGYSHIKIMIAFFIRLVVGRGRLHIFSW 108
HVVA L + NL YL D F+ IPP I L+ W
Sbjct: 226 HVVAGLEGSKNLNYLGGDMFKGIPPADAILLK---------------------------W 258
Query: 109 LNFMKRVINMQIIIHVFGDEESVKILKICREAITSKAKLS-------------------- 148
I+H + DEE VKIL+ CR+AI SK K
Sbjct: 259 ------------ILHDWNDEECVKILQQCRQAIPSKEKGGKVIIIDMMMENQKGDDESME 306
Query: 149 ------------------TEKELESLFVEVHFHHYKITPLFGLPSLIEVYP 181
EKE E LF++ F YKITP+ GL SLIEVYP
Sbjct: 307 TQLFFDMLMMILVTGQERNEKEWEKLFLDAGFSGYKITPILGLRSLIEVYP 357
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|359485259|ref|XP_003633248.1| PREDICTED: tabersonine 16-O-methyltransferase-like [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 113 bits (282), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 83/231 (35%), Positives = 99/231 (42%), Gaps = 90/231 (38%)
Query: 1 FNQAVASDTQTVTASLALKYCKQIFERLGSLVDVG------------AFPCVKCTEFDQP 48
FN+A+ASD + VT+ L LK K +FE L SLVDVG AFP + CT D P
Sbjct: 167 FNEAMASDARLVTSVL-LKEGKGVFEGLNSLVDVGGGTGQVAKAIANAFPHLNCTVLDLP 225
Query: 49 HVVANLLDTNNLKYLADDFFQSIPPVCMIPLRLGYSHIKIMIAFFIRLVVGRGRLHIFSW 108
HVVA L + NL Y A D F++IPP I L+ W
Sbjct: 226 HVVAGLQGSKNLNYFAGDIFEAIPPADAILLK---------------------------W 258
Query: 109 LNFMKRVINMQIIIHVFGDEESVKILKICREAITSK------------------------ 144
I+H + DEE VKILK CREAI SK
Sbjct: 259 ------------ILHDWSDEECVKILKRCREAIPSKENGGKVIIIDMIMMKNQGDYKSIE 306
Query: 145 --------------AKLSTEKELESLFVEVHFHHYKITPLFGLPSLIEVYP 181
+ E E E LF++ F HYKITP+ GL SLIEVYP
Sbjct: 307 TQLFFDMTMMIFAAGRERDENEWEKLFLDAGFSHYKITPILGLRSLIEVYP 357
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|147776504|emb|CAN69556.1| hypothetical protein VITISV_027590 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 113 bits (282), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 83/231 (35%), Positives = 99/231 (42%), Gaps = 90/231 (38%)
Query: 1 FNQAVASDTQTVTASLALKYCKQIFERLGSLVDVG------------AFPCVKCTEFDQP 48
FN+A+ASD + VT+ L LK K +FE L SLVDVG AFP + CT D P
Sbjct: 133 FNEAMASDARLVTSVL-LKEGKGVFEGLNSLVDVGGGTGQVAKAIANAFPHLNCTVLDLP 191
Query: 49 HVVANLLDTNNLKYLADDFFQSIPPVCMIPLRLGYSHIKIMIAFFIRLVVGRGRLHIFSW 108
HVVA L + NL Y A D F++IPP I L+ W
Sbjct: 192 HVVAGLQGSKNLNYFAGDIFEAIPPADAILLK---------------------------W 224
Query: 109 LNFMKRVINMQIIIHVFGDEESVKILKICREAITSK------------------------ 144
I+H + DEE VKILK CREAI SK
Sbjct: 225 ------------ILHDWSDEECVKILKRCREAIPSKENGGKVIIIDMIMMKNQGDYKSIE 272
Query: 145 --------------AKLSTEKELESLFVEVHFHHYKITPLFGLPSLIEVYP 181
+ E E E LF++ F HYKITP+ GL SLIEVYP
Sbjct: 273 TQLFFDMTMMIFAAGRERDENEWEKLFLDAGFSHYKITPILGLRSLIEVYP 323
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|302143370|emb|CBI21931.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 113 bits (282), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 83/231 (35%), Positives = 99/231 (42%), Gaps = 90/231 (38%)
Query: 1 FNQAVASDTQTVTASLALKYCKQIFERLGSLVDVG------------AFPCVKCTEFDQP 48
FN+A+ASD + VT+ L LK K +FE L SLVDVG AFP + CT D P
Sbjct: 88 FNEAMASDARLVTSVL-LKEGKGVFEGLNSLVDVGGGTGQVAKAIANAFPHLNCTVLDLP 146
Query: 49 HVVANLLDTNNLKYLADDFFQSIPPVCMIPLRLGYSHIKIMIAFFIRLVVGRGRLHIFSW 108
HVVA L + NL Y A D F++IPP I L+ W
Sbjct: 147 HVVAGLQGSKNLNYFAGDIFEAIPPADAILLK---------------------------W 179
Query: 109 LNFMKRVINMQIIIHVFGDEESVKILKICREAITSK------------------------ 144
I+H + DEE VKILK CREAI SK
Sbjct: 180 ------------ILHDWSDEECVKILKRCREAIPSKENGGKVIIIDMIMMKNQGDYKSIE 227
Query: 145 --------------AKLSTEKELESLFVEVHFHHYKITPLFGLPSLIEVYP 181
+ E E E LF++ F HYKITP+ GL SLIEVYP
Sbjct: 228 TQLFFDMTMMIFAAGRERDENEWEKLFLDAGFSHYKITPILGLRSLIEVYP 278
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|359485261|ref|XP_003633249.1| PREDICTED: tabersonine 16-O-methyltransferase-like [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 113 bits (282), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 83/231 (35%), Positives = 99/231 (42%), Gaps = 90/231 (38%)
Query: 1 FNQAVASDTQTVTASLALKYCKQIFERLGSLVDVG------------AFPCVKCTEFDQP 48
FN+A+ASD + VT+ L LK K +FE L SLVDVG AFP + CT D P
Sbjct: 167 FNEAMASDARLVTSVL-LKEGKGVFEGLNSLVDVGGGTGQVAKAIANAFPHLNCTVLDLP 225
Query: 49 HVVANLLDTNNLKYLADDFFQSIPPVCMIPLRLGYSHIKIMIAFFIRLVVGRGRLHIFSW 108
HVVA L + NL Y A D F++IPP I L+ W
Sbjct: 226 HVVAGLQGSKNLNYFAGDIFEAIPPADAILLK---------------------------W 258
Query: 109 LNFMKRVINMQIIIHVFGDEESVKILKICREAITSK------------------------ 144
I+H + DEE VKILK CREAI SK
Sbjct: 259 ------------ILHDWSDEECVKILKRCREAIPSKENGGKVIIIDMIMMKNQGDYKSIE 306
Query: 145 --------------AKLSTEKELESLFVEVHFHHYKITPLFGLPSLIEVYP 181
+ E E E LF++ F HYKITP+ GL SLIEVYP
Sbjct: 307 TQLFFDMTMMIFAAGRERDENEWEKLFLDAGFSHYKITPILGLRSLIEVYP 357
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|147865742|emb|CAN78992.1| hypothetical protein VITISV_005827 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 112 bits (281), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 82/231 (35%), Positives = 100/231 (43%), Gaps = 90/231 (38%)
Query: 1 FNQAVASDTQTVTASLALKYCKQIFERLGSLVDVG------------AFPCVKCTEFDQP 48
FN+A+ASD++ V + L LK K +FE L SLVDVG AFP + CT D P
Sbjct: 167 FNEAMASDSRLVISVL-LKEGKGLFEGLNSLVDVGGGTGKVAKAIANAFPHLNCTVLDPP 225
Query: 49 HVVANLLDTNNLKYLADDFFQSIPPVCMIPLRLGYSHIKIMIAFFIRLVVGRGRLHIFSW 108
HVVA L ++ NL Y A D F++IPP I L+ W
Sbjct: 226 HVVAGLQESKNLNYFAGDMFEAIPPADAILLK---------------------------W 258
Query: 109 LNFMKRVINMQIIIHVFGDEESVKILKICREAITSK------------------------ 144
I+H + DEE VKILK CREAI SK
Sbjct: 259 ------------ILHDWSDEECVKILKRCREAIPSKENGGKVIIIDMIMMKNQGDYKSVE 306
Query: 145 --------------AKLSTEKELESLFVEVHFHHYKITPLFGLPSLIEVYP 181
+ E E E LF++ F HYKITP+ GL SLIEVYP
Sbjct: 307 TQLYFDMVMMILVTGRERDENEWEKLFLDAGFSHYKITPILGLRSLIEVYP 357
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|225446494|ref|XP_002278294.1| PREDICTED: tabersonine 16-O-methyltransferase [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 112 bits (279), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 82/231 (35%), Positives = 100/231 (43%), Gaps = 90/231 (38%)
Query: 1 FNQAVASDTQTVTASLALKYCKQIFERLGSLVDVG------------AFPCVKCTEFDQP 48
FN+A+ASD++ V + L LK K +FE L SLVDVG AFP + CT D P
Sbjct: 167 FNEAMASDSRLVISVL-LKEGKGLFEGLNSLVDVGGGTGKVAKAIANAFPHLNCTVLDLP 225
Query: 49 HVVANLLDTNNLKYLADDFFQSIPPVCMIPLRLGYSHIKIMIAFFIRLVVGRGRLHIFSW 108
HVVA L ++ NL Y A D F++IPP I L+ W
Sbjct: 226 HVVAGLQESKNLNYFAGDMFEAIPPADAILLK---------------------------W 258
Query: 109 LNFMKRVINMQIIIHVFGDEESVKILKICREAITSK------------------------ 144
I+H + DEE VKILK CREAI SK
Sbjct: 259 ------------ILHDWSDEECVKILKRCREAIPSKENGGKVIIIDMIMMKNQGDYKSVE 306
Query: 145 --------------AKLSTEKELESLFVEVHFHHYKITPLFGLPSLIEVYP 181
+ E E E LF++ F HYKITP+ GL SLIEVYP
Sbjct: 307 TQLYFDMVMMILVTGRERDENEWEKLFLDAGFSHYKITPILGLRSLIEVYP 357
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST 
Original result of BLAST against Gene Ontology (AMIGO)
ID ![]() |
Alignment graph ![]() |
Length ![]() |
Definition ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 181 | ||||||
| UNIPROTKB|B0EXJ8 | 355 | 16OMT "Tabersonine 16-O-methyl | 0.436 | 0.222 | 0.434 | 8.6e-23 | |
| UNIPROTKB|Q84KK5 | 357 | D7OMT "Isoflavone 7-O-methyltr | 0.430 | 0.218 | 0.434 | 4.7e-21 | |
| UNIPROTKB|A8QW53 | 374 | OMT3 "5-pentadecatrienyl resor | 0.436 | 0.211 | 0.372 | 6.5e-21 | |
| UNIPROTKB|Q84KK6 | 367 | HI4'OMT "Isoflavone 4'-O-methy | 0.430 | 0.212 | 0.456 | 4.6e-20 | |
| UNIPROTKB|Q84KK4 | 365 | HI4'OMT "Isoflavone 4'-O-methy | 0.966 | 0.479 | 0.357 | 9.8e-20 | |
| UNIPROTKB|Q8GSN1 | 348 | Q8GSN1 "Myricetin O-methyltran | 0.436 | 0.227 | 0.402 | 1.2e-15 | |
| UNIPROTKB|Q6VMW0 | 366 | OMT2 "8-hydroxyquercetin 8-O-m | 0.392 | 0.193 | 0.380 | 9.6e-13 | |
| TAIR|locus:2132801 | 325 | AT4G35150 [Arabidopsis thalian | 0.375 | 0.209 | 0.341 | 5.3e-07 | |
| TAIR|locus:2132806 | 382 | AT4G35160 [Arabidopsis thalian | 0.375 | 0.178 | 0.341 | 0.00014 | |
| UNIPROTKB|Q84N28 | 360 | OMT1 "Flavone O-methyltransfer | 0.386 | 0.194 | 0.297 | 0.0006 |
| UNIPROTKB|B0EXJ8 16OMT "Tabersonine 16-O-methyltransferase" [Catharanthus roseus (taxid:4058)] | Back alignment and assigned GO terms |
|---|
Score = 162 (62.1 bits), Expect = 8.6e-23, Sum P(3) = 8.6e-23
Identities = 40/92 (43%), Positives = 55/92 (59%)
Query: 1 FNQAVASDTQTVTASLALKYCKQIFERLGSLVDVGA------------FPCVKCTEFDQP 48
FN+A+ASD+Q ++ L +Y K +FE L SLVD+G FP +KCT FD P
Sbjct: 166 FNEAMASDSQLISKLLIGEY-KFLFEGLASLVDIGGGTGTIAKAIAKNFPQLKCTVFDLP 224
Query: 49 HVVANLLDTNNLKYLADDFFQSIPPVCMIPLR 80
HVVANL N++++A D F+ IP I L+
Sbjct: 225 HVVANLESKENVEFVAGDMFEKIPSANAIFLK 256
|
|
| UNIPROTKB|Q84KK5 D7OMT "Isoflavone 7-O-methyltransferase" [Glycyrrhiza echinata (taxid:46348)] | Back alignment and assigned GO terms |
|---|
Score = 163 (62.4 bits), Expect = 4.7e-21, Sum P(2) = 4.7e-21
Identities = 40/92 (43%), Positives = 53/92 (57%)
Query: 1 FNQAVASDTQTVTASLALKYCKQIFERLGSLVDVGA------------FPCVKCTEFDQP 48
FN A+ASD+Q + +LAL+ C FE + S+VDVG FP +KC FD+P
Sbjct: 169 FNDAMASDSQMI--NLALRDCNSGFEGVESIVDVGGGIGTTAKIICDTFPNLKCIVFDRP 226
Query: 49 HVVANLLDTNNLKYLADDFFQSIPPVCMIPLR 80
VV NL TNNL Y+ D FQS+P + L+
Sbjct: 227 KVVENLSGTNNLSYVGGDMFQSVPKADAVLLK 258
|
|
| UNIPROTKB|A8QW53 OMT3 "5-pentadecatrienyl resorcinol O-methyltransferase" [Sorghum bicolor (taxid:4558)] | Back alignment and assigned GO terms |
|---|
Score = 135 (52.6 bits), Expect = 6.5e-21, Sum P(3) = 6.5e-21
Identities = 35/94 (37%), Positives = 53/94 (56%)
Query: 1 FNQAVASDTQTVTASLALKYCKQIFERLGSLVDVG------------AFPCVKCTEFDQP 48
FN A+A+D+ + L LK ++F + SLVDV AFPC+KCT D P
Sbjct: 183 FNNAMAADSNFLMQIL-LKEFSEVFLGIDSLVDVAGGVGGATMAIAAAFPCLKCTVLDLP 241
Query: 49 HVVANLLDTN--NLKYLADDFFQSIPPVCMIPLR 80
HVVA ++ N++++ D F+SIPP ++ L+
Sbjct: 242 HVVAKAPSSSIGNVQFVGGDMFESIPPANVVLLK 275
|
|
| UNIPROTKB|Q84KK6 HI4'OMT "Isoflavone 4'-O-methyltransferase" [Glycyrrhiza echinata (taxid:46348)] | Back alignment and assigned GO terms |
|---|
Score = 176 (67.0 bits), Expect = 4.6e-20, Sum P(2) = 4.6e-20
Identities = 42/92 (45%), Positives = 54/92 (58%)
Query: 1 FNQAVASDTQTVTASLALKYCKQIFERLGSLVDVGA------------FPCVKCTEFDQP 48
F +A+A+D+Q LALK C+ +FE L SLVDVG FP +KCT FDQP
Sbjct: 178 FQEAMAADSQMF--KLALKECRHVFEGLESLVDVGGGTGGVTKLIHEEFPHLKCTVFDQP 235
Query: 49 HVVANLLDTNNLKYLADDFFQSIPPVCMIPLR 80
VV NL NLK++ D F+SIPP + L+
Sbjct: 236 QVVGNLSGNENLKFVGGDMFKSIPPADAVLLK 267
|
|
| UNIPROTKB|Q84KK4 HI4'OMT "Isoflavone 4'-O-methyltransferase" [Lotus japonicus (taxid:34305)] | Back alignment and assigned GO terms |
|---|
Score = 236 (88.1 bits), Expect = 9.8e-20, P = 9.8e-20
Identities = 70/196 (35%), Positives = 96/196 (48%)
Query: 1 FNQAVASDTQTVTASLALKYCKQIFERLGSLVDVG------------AFPCVKCTEFDQP 48
F +A+A+D+ LALK CK +FE LGSLVDV AFP VKCT FDQP
Sbjct: 176 FQEAMAADSHMF--KLALKECKHVFEGLGSLVDVAGGRGGVTKLIREAFPHVKCTVFDQP 233
Query: 49 HVVANLLDTNNLKYLADDFFQSIPPVCMIPLRLGYSHIKIMIAFFIRLVVGRGRLHIFSW 108
VVANL NL ++ D F+S+PP + L+ ++ L + + S
Sbjct: 234 QVVANLTGDENLNFVGGDMFKSVPPADAVLLKWVLHDWNDELS----LKILKNCKEAISG 289
Query: 109 LNFMKRVINMQIIIHVFGDEESVKILKICREAITS---KAKLSTEKELESLFVEVHFHHY 165
+VI + I I D+ + LK+ + + K +KE E L + F Y
Sbjct: 290 RGKEGKVIIIDISIDETSDDRELTELKLDYDLVMLTMFNGKEREKKEWEKLIYDAGFSSY 349
Query: 166 KITPLFGLPSLIEVYP 181
KITP+ G SLIEV+P
Sbjct: 350 KITPICGFKSLIEVFP 365
|
|
| UNIPROTKB|Q8GSN1 Q8GSN1 "Myricetin O-methyltransferase" [Catharanthus roseus (taxid:4058)] | Back alignment and assigned GO terms |
|---|
Score = 141 (54.7 bits), Expect = 1.2e-15, Sum P(2) = 1.2e-15
Identities = 37/92 (40%), Positives = 52/92 (56%)
Query: 1 FNQAVASDTQTVTASLALKYCKQIFERLGSLVDVG------------AFPCVKCTEFDQP 48
F+ +A+D+ V+ L ++ +FE L SLVDVG +FP +KCT FD P
Sbjct: 156 FDGVMAADSILVSKMLIPEF-NYLFEGLDSLVDVGGGTGTIAKAIAKSFPDLKCTVFDLP 214
Query: 49 HVVANLLDTNNLKYLADDFFQSIPPVCMIPLR 80
HVVANL T NL+++ D F+ IP I L+
Sbjct: 215 HVVANLESTENLEFVGGDMFEKIPSANAILLK 246
|
|
| UNIPROTKB|Q6VMW0 OMT2 "8-hydroxyquercetin 8-O-methyltransferase" [Mentha x piperita (taxid:34256)] | Back alignment and assigned GO terms |
|---|
Score = 127 (49.8 bits), Expect = 9.6e-13, Sum P(2) = 9.6e-13
Identities = 32/84 (38%), Positives = 47/84 (55%)
Query: 1 FNQAVASDTQTVTASLALKYCKQIFERLGSLVDVG------------AFPCVKCTEFDQP 48
FN+A+A D V + L + C++IF+ L S+VDVG AFP ++CT D P
Sbjct: 175 FNEAMACDAGFVNSILTTE-CREIFDGLESMVDVGGGTGATAKGIAAAFPGMECTVLDLP 233
Query: 49 HVVANLLDTNNLKYLADDFFQSIP 72
+VV L + NL +++ D F IP
Sbjct: 234 NVVGGLKGSENLSFVSGDMFDFIP 257
|
|
| TAIR|locus:2132801 AT4G35150 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 90 (36.7 bits), Expect = 5.3e-07, Sum P(3) = 5.3e-07
Identities = 29/85 (34%), Positives = 44/85 (51%)
Query: 2 NQAVASDTQTVTASLALKYCKQIFERLGSLVDVGA------------FPCVKCTEFDQPH 49
N+A+A D + V +A C+ +F+ + ++VDVG FP +K FD PH
Sbjct: 129 NEAMACDARRVVPRVA-GACQGLFDGVATVVDVGGGTGETMGILVKEFPWIKGFNFDLPH 187
Query: 50 V--VANLLDTNNLKYLADDFFQSIP 72
V VA +LD ++ + D F SIP
Sbjct: 188 VIEVAQVLD--GVENVEGDMFDSIP 210
|
|
| TAIR|locus:2132806 AT4G35160 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 87 (35.7 bits), Expect = 0.00014, Sum P(2) = 0.00014
Identities = 29/85 (34%), Positives = 43/85 (50%)
Query: 2 NQAVASDTQTVTASLALKYCKQIFERLGSLVDVGA------------FPCVKCTEFDQPH 49
N+A+A D + V +A C +F+ + ++VDVG FP +K FD PH
Sbjct: 186 NEAMACDARRVVPRVA-GACHGLFDGVTTMVDVGGGTGETMGMLVKEFPWIKGFNFDLPH 244
Query: 50 V--VANLLDTNNLKYLADDFFQSIP 72
V VA +LD ++ + D F SIP
Sbjct: 245 VIEVAEVLD--GVENVEGDMFDSIP 267
|
|
| UNIPROTKB|Q84N28 OMT1 "Flavone O-methyltransferase 1" [Triticum aestivum (taxid:4565)] | Back alignment and assigned GO terms |
|---|
Score = 92 (37.4 bits), Expect = 0.00060, Sum P(2) = 0.00060
Identities = 25/84 (29%), Positives = 41/84 (48%)
Query: 1 FNQAVASDTQTVTASLALKYCKQIFERLGSLVDVG------------AFPCVKCTEFDQP 48
FN+ + + + +T L Y + FE LG++VDVG A+P +K FD P
Sbjct: 173 FNEGMKNHSIIITKKLLEVY--KGFEGLGTIVDVGGGVGATVGAITAAYPAIKGINFDLP 230
Query: 49 HVVANLLDTNNLKYLADDFFQSIP 72
HV++ + ++ D FQ +P
Sbjct: 231 HVISEAQPFPGVTHVGGDMFQKVP 254
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries 
Original result of BLAST against SWISS-PROT
No confident hit for EC number transfering in SWISSPROT detected by BLAST
EC Number Prediction by Ezypred Server 
Original result from Ezypred Server
Fail to connect to Ezypred Server
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING 
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST 
Original result of RPS-BLAST against CDD database part I
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| Query | 181 | |||
| pfam00891 | 239 | pfam00891, Methyltransf_2, O-methyltransferase | 7e-20 |
| >gnl|CDD|216177 pfam00891, Methyltransf_2, O-methyltransferase | Back alignment and domain information |
|---|
Score = 83.1 bits (206), Expect = 7e-20
Identities = 40/159 (25%), Positives = 64/159 (40%), Gaps = 53/159 (33%)
Query: 1 FNQAVASDTQTVTASLALKYCKQIFERLGSLVDVG------------AFPCVKCTEFDQP 48
FN+A+A+ ++ V + F L SLVDVG A+P +K FD P
Sbjct: 77 FNRAMAAHSRLV--MKKILETAFDFSGLSSLVDVGGGTGALAAAIVRAYPHIKGIVFDLP 134
Query: 49 HVVANLLDTNNLKYLADDFFQSIPPVCMIPLRLGYSHIKIMIAFFIRLVVGRGRLHIFSW 108
HV+A+ + ++++ DFF+S+P + W
Sbjct: 135 HVIADAPSADRVEFVGGDFFESVP---------------------------EADAILLKW 167
Query: 109 LNFMKRVINMQIIIHVFGDEESVKILKICREAITSKAKL 147
++H + DE+ VKILK C EA+ K+
Sbjct: 168 ------------VLHDWSDEDCVKILKRCYEALPPGGKV 194
|
This family includes a range of O-methyltransferases. These enzymes utilise S-adenosyl methionine. Length = 239 |
Conserved Domains Detected by HHsearch 
Original result of HHsearch against CDD database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 181 | |||
| PF00891 | 241 | Methyltransf_2: O-methyltransferase; InterPro: IPR | 99.95 | |
| KOG3178 | 342 | consensus Hydroxyindole-O-methyltransferase and re | 99.94 | |
| TIGR02716 | 306 | C20_methyl_CrtF C-20 methyltransferase BchU. Membe | 99.78 | |
| TIGR00740 | 239 | methyltransferase, putative. A simple BLAST search | 98.76 | |
| PRK15451 | 247 | tRNA cmo(5)U34 methyltransferase; Provisional | 98.67 | |
| TIGR02752 | 231 | MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone me | 98.59 | |
| PTZ00098 | 263 | phosphoethanolamine N-methyltransferase; Provision | 98.56 | |
| PRK00216 | 239 | ubiE ubiquinone/menaquinone biosynthesis methyltra | 98.47 | |
| TIGR01934 | 223 | MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis | 98.45 | |
| PRK14103 | 255 | trans-aconitate 2-methyltransferase; Provisional | 98.33 | |
| PLN02490 | 340 | MPBQ/MSBQ methyltransferase | 98.3 | |
| PRK08287 | 187 | cobalt-precorrin-6Y C(15)-methyltransferase; Valid | 98.24 | |
| smart00828 | 224 | PKS_MT Methyltransferase in polyketide synthase (P | 98.22 | |
| PLN03075 | 296 | nicotianamine synthase; Provisional | 98.2 | |
| PLN02233 | 261 | ubiquinone biosynthesis methyltransferase | 98.18 | |
| PF01209 | 233 | Ubie_methyltran: ubiE/COQ5 methyltransferase famil | 98.14 | |
| PLN02336 | 475 | phosphoethanolamine N-methyltransferase | 98.12 | |
| TIGR03438 | 301 | probable methyltransferase. This model represents | 98.06 | |
| PLN02244 | 340 | tocopherol O-methyltransferase | 98.02 | |
| PRK08317 | 241 | hypothetical protein; Provisional | 97.99 | |
| PF05891 | 218 | Methyltransf_PK: AdoMet dependent proline di-methy | 97.94 | |
| PRK11207 | 197 | tellurite resistance protein TehB; Provisional | 97.92 | |
| PF12847 | 112 | Methyltransf_18: Methyltransferase domain; PDB: 3G | 97.91 | |
| PRK11036 | 255 | putative S-adenosyl-L-methionine-dependent methylt | 97.9 | |
| PRK11873 | 272 | arsM arsenite S-adenosylmethyltransferase; Reviewe | 97.89 | |
| TIGR00537 | 179 | hemK_rel_arch HemK-related putative methylase. The | 97.84 | |
| PRK07580 | 230 | Mg-protoporphyrin IX methyl transferase; Validated | 97.83 | |
| PRK01683 | 258 | trans-aconitate 2-methyltransferase; Provisional | 97.82 | |
| TIGR02021 | 219 | BchM-ChlM magnesium protoporphyrin O-methyltransfe | 97.82 | |
| PRK15068 | 322 | tRNA mo(5)U34 methyltransferase; Provisional | 97.79 | |
| PRK06202 | 232 | hypothetical protein; Provisional | 97.79 | |
| PF13847 | 152 | Methyltransf_31: Methyltransferase domain; PDB: 3T | 97.71 | |
| TIGR03534 | 251 | RF_mod_PrmC protein-(glutamine-N5) methyltransfera | 97.7 | |
| PF13489 | 161 | Methyltransf_23: Methyltransferase domain; PDB: 3J | 97.67 | |
| PLN02396 | 322 | hexaprenyldihydroxybenzoate methyltransferase | 97.64 | |
| PF12147 | 311 | Methyltransf_20: Putative methyltransferase; Inter | 97.58 | |
| PLN02336 | 475 | phosphoethanolamine N-methyltransferase | 97.5 | |
| PLN02585 | 315 | magnesium protoporphyrin IX methyltransferase | 97.48 | |
| COG2226 | 238 | UbiE Methylase involved in ubiquinone/menaquinone | 97.45 | |
| TIGR00452 | 314 | methyltransferase, putative. Known examples to dat | 97.44 | |
| PRK09328 | 275 | N5-glutamine S-adenosyl-L-methionine-dependent met | 97.32 | |
| PRK15001 | 378 | SAM-dependent 23S ribosomal RNA mG1835 methyltrans | 97.31 | |
| TIGR02072 | 240 | BioC biotin biosynthesis protein BioC. This enzyme | 97.27 | |
| PLN02232 | 160 | ubiquinone biosynthesis methyltransferase | 97.26 | |
| PRK06922 | 677 | hypothetical protein; Provisional | 97.24 | |
| PRK12335 | 287 | tellurite resistance protein TehB; Provisional | 97.16 | |
| TIGR00477 | 195 | tehB tellurite resistance protein TehB. Part of a | 97.16 | |
| TIGR00138 | 181 | gidB 16S rRNA methyltransferase GidB. GidB (glucos | 97.06 | |
| PRK14968 | 188 | putative methyltransferase; Provisional | 97.05 | |
| PRK05134 | 233 | bifunctional 3-demethylubiquinone-9 3-methyltransf | 97.01 | |
| PF08242 | 99 | Methyltransf_12: Methyltransferase domain; InterPr | 96.96 | |
| PRK04266 | 226 | fibrillarin; Provisional | 96.93 | |
| smart00138 | 264 | MeTrc Methyltransferase, chemotaxis proteins. Meth | 96.88 | |
| KOG1540 | 296 | consensus Ubiquinone biosynthesis methyltransferas | 96.87 | |
| PF02353 | 273 | CMAS: Mycolic acid cyclopropane synthetase; InterP | 96.86 | |
| PF11968 | 219 | DUF3321: Putative methyltransferase (DUF3321); Int | 96.85 | |
| TIGR02081 | 194 | metW methionine biosynthesis protein MetW. This pr | 96.82 | |
| PRK10258 | 251 | biotin biosynthesis protein BioC; Provisional | 96.77 | |
| PF08241 | 95 | Methyltransf_11: Methyltransferase domain; InterPr | 96.68 | |
| TIGR03840 | 213 | TMPT_Se_Te thiopurine S-methyltransferase, Se/Te d | 96.67 | |
| PRK03612 | 521 | spermidine synthase; Provisional | 96.64 | |
| PF06080 | 204 | DUF938: Protein of unknown function (DUF938); Inte | 96.6 | |
| PRK09489 | 342 | rsmC 16S ribosomal RNA m2G1207 methyltransferase; | 96.58 | |
| PRK04457 | 262 | spermidine synthase; Provisional | 96.5 | |
| PRK11805 | 307 | N5-glutamine S-adenosyl-L-methionine-dependent met | 96.5 | |
| PF13649 | 101 | Methyltransf_25: Methyltransferase domain; PDB: 3B | 96.47 | |
| COG4106 | 257 | Tam Trans-aconitate methyltransferase [General fun | 96.43 | |
| TIGR01983 | 224 | UbiG ubiquinone biosynthesis O-methyltransferase. | 96.37 | |
| TIGR03587 | 204 | Pse_Me-ase pseudaminic acid biosynthesis-associate | 96.35 | |
| TIGR00536 | 284 | hemK_fam HemK family putative methylases. The gene | 96.31 | |
| PRK00377 | 198 | cbiT cobalt-precorrin-6Y C(15)-methyltransferase; | 96.25 | |
| PRK01544 | 506 | bifunctional N5-glutamine S-adenosyl-L-methionine- | 96.22 | |
| PF04672 | 267 | Methyltransf_19: S-adenosyl methyltransferase; Int | 96.2 | |
| COG3315 | 297 | O-Methyltransferase involved in polyketide biosynt | 96.2 | |
| TIGR02469 | 124 | CbiT precorrin-6Y C5,15-methyltransferase (decarbo | 96.19 | |
| PRK14966 | 423 | unknown domain/N5-glutamine S-adenosyl-L-methionin | 96.17 | |
| PRK13255 | 218 | thiopurine S-methyltransferase; Reviewed | 96.14 | |
| TIGR03533 | 284 | L3_gln_methyl protein-(glutamine-N5) methyltransfe | 96.13 | |
| PRK05785 | 226 | hypothetical protein; Provisional | 96.05 | |
| PRK00517 | 250 | prmA ribosomal protein L11 methyltransferase; Revi | 95.99 | |
| PRK11705 | 383 | cyclopropane fatty acyl phospholipid synthase; Pro | 95.9 | |
| PRK11188 | 209 | rrmJ 23S rRNA methyltransferase J; Provisional | 95.85 | |
| PRK00121 | 202 | trmB tRNA (guanine-N(7)-)-methyltransferase; Revie | 95.71 | |
| PF05175 | 170 | MTS: Methyltransferase small domain; InterPro: IPR | 95.7 | |
| PTZ00146 | 293 | fibrillarin; Provisional | 95.7 | |
| PRK00107 | 187 | gidB 16S rRNA methyltransferase GidB; Reviewed | 95.62 | |
| TIGR00406 | 288 | prmA ribosomal protein L11 methyltransferase. Ribo | 95.61 | |
| PF05401 | 201 | NodS: Nodulation protein S (NodS); InterPro: IPR00 | 95.57 | |
| cd02440 | 107 | AdoMet_MTases S-adenosylmethionine-dependent methy | 95.55 | |
| TIGR00091 | 194 | tRNA (guanine-N(7)-)-methyltransferase. In E. coli | 95.51 | |
| TIGR00027 | 260 | mthyl_TIGR00027 methyltransferase, putative, TIGR0 | 95.42 | |
| PRK07402 | 196 | precorrin-6B methylase; Provisional | 95.27 | |
| COG2230 | 283 | Cfa Cyclopropane fatty acid synthase and related m | 95.14 | |
| TIGR03704 | 251 | PrmC_rel_meth putative protein-(glutamine-N5) meth | 94.64 | |
| PRK13256 | 226 | thiopurine S-methyltransferase; Reviewed | 94.48 | |
| COG4123 | 248 | Predicted O-methyltransferase [General function pr | 94.48 | |
| PHA03411 | 279 | putative methyltransferase; Provisional | 94.41 | |
| PRK01581 | 374 | speE spermidine synthase; Validated | 94.17 | |
| TIGR01177 | 329 | conserved hypothetical protein TIGR01177. This fam | 94.1 | |
| COG2813 | 300 | RsmC 16S RNA G1207 methylase RsmC [Translation, ri | 94.0 | |
| PF03848 | 192 | TehB: Tellurite resistance protein TehB; InterPro: | 93.83 | |
| COG2242 | 187 | CobL Precorrin-6B methylase 2 [Coenzyme metabolism | 93.78 | |
| PLN02672 | 1082 | methionine S-methyltransferase | 93.65 | |
| PLN02366 | 308 | spermidine synthase | 93.6 | |
| PRK00811 | 283 | spermidine synthase; Provisional | 93.54 | |
| COG2227 | 243 | UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4- | 93.04 | |
| PRK14967 | 223 | putative methyltransferase; Provisional | 92.88 | |
| PF06325 | 295 | PrmA: Ribosomal protein L11 methyltransferase (Prm | 92.87 | |
| PF01739 | 196 | CheR: CheR methyltransferase, SAM binding domain; | 92.72 | |
| KOG2361 | 264 | consensus Predicted methyltransferase [General fun | 92.34 | |
| COG2890 | 280 | HemK Methylase of polypeptide chain release factor | 92.28 | |
| PF08003 | 315 | Methyltransf_9: Protein of unknown function (DUF16 | 92.28 | |
| COG2264 | 300 | PrmA Ribosomal protein L11 methylase [Translation, | 92.25 | |
| TIGR03439 | 319 | methyl_EasF probable methyltransferase domain, Eas | 92.18 | |
| KOG2899 | 288 | consensus Predicted methyltransferase [General fun | 91.81 | |
| PRK10611 | 287 | chemotaxis methyltransferase CheR; Provisional | 91.61 | |
| KOG1270 | 282 | consensus Methyltransferases [Coenzyme transport a | 90.71 | |
| PRK13942 | 212 | protein-L-isoaspartate O-methyltransferase; Provis | 90.57 | |
| TIGR00438 | 188 | rrmJ cell division protein FtsJ. | 90.17 | |
| TIGR00417 | 270 | speE spermidine synthase. the SpeE subunit of sper | 89.08 | |
| PF07942 | 270 | N2227: N2227-like protein; InterPro: IPR012901 Thi | 89.06 | |
| COG4262 | 508 | Predicted spermidine synthase with an N-terminal m | 88.98 | |
| PRK14902 | 444 | 16S rRNA methyltransferase B; Provisional | 87.7 | |
| PRK14121 | 390 | tRNA (guanine-N(7)-)-methyltransferase; Provisiona | 87.39 | |
| PF05724 | 218 | TPMT: Thiopurine S-methyltransferase (TPMT); Inter | 87.04 | |
| PRK13944 | 205 | protein-L-isoaspartate O-methyltransferase; Provis | 86.55 | |
| COG4301 | 321 | Uncharacterized conserved protein [Function unknow | 86.09 | |
| PF04072 | 183 | LCM: Leucine carboxyl methyltransferase; InterPro: | 85.47 | |
| PRK10901 | 427 | 16S rRNA methyltransferase B; Provisional | 85.27 | |
| TIGR00080 | 215 | pimt protein-L-isoaspartate(D-aspartate) O-methylt | 84.09 | |
| PRK14904 | 445 | 16S rRNA methyltransferase B; Provisional | 84.07 | |
| PF07021 | 193 | MetW: Methionine biosynthesis protein MetW; InterP | 84.03 | |
| COG2521 | 287 | Predicted archaeal methyltransferase [General func | 83.62 | |
| PF03291 | 331 | Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 | 83.48 | |
| PF05219 | 265 | DREV: DREV methyltransferase; InterPro: IPR007884 | 82.04 | |
| PLN02781 | 234 | Probable caffeoyl-CoA O-methyltransferase | 81.21 | |
| COG1352 | 268 | CheR Methylase of chemotaxis methyl-accepting prot | 80.42 | |
| PRK11088 | 272 | rrmA 23S rRNA methyltransferase A; Provisional | 80.25 |
| >PF00891 Methyltransf_2: O-methyltransferase; InterPro: IPR001077 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=99.95 E-value=3.9e-28 Score=201.65 Aligned_cols=117 Identities=30% Similarity=0.533 Sum_probs=104.8
Q ss_pred ChHHHhhccccchhHHHHHHhhhhhcCCCeEEEec------------CCCCceEEEeechhhhhhhccCCCceEEecCCC
Q 036440 1 FNQAVASDTQTVTASLALKYCKQIFERLGSLVDVG------------AFPCVKCTEFDQPHVVANLLDTNNLKYLADDFF 68 (181)
Q Consensus 1 F~~aM~~~s~~~~~~~~l~~~~~d~~~~~~lvDvG------------~~P~l~~~~~DlP~Vv~~a~~~~ri~~~~gDff 68 (181)
|+++|+..++....+.+++.+ ||++.++||||| +||+++++++|+|+|++.+...+||++++||||
T Consensus 76 f~~~m~~~~~~~~~~~~~~~~--d~~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dlp~v~~~~~~~~rv~~~~gd~f 153 (241)
T PF00891_consen 76 FNAAMAEYSRLNAFDILLEAF--DFSGFKTVVDVGGGSGHFAIALARAYPNLRATVFDLPEVIEQAKEADRVEFVPGDFF 153 (241)
T ss_dssp HHHHHHHHHHHHHHHHHHHHS--TTTTSSEEEEET-TTSHHHHHHHHHSTTSEEEEEE-HHHHCCHHHTTTEEEEES-TT
T ss_pred HHHHHHhhhhcchhhhhhccc--cccCccEEEeccCcchHHHHHHHHHCCCCcceeeccHhhhhccccccccccccccHH
Confidence 678898777766546678888 899999999999 999999999999999999888999999999999
Q ss_pred CCCCCcceEeccccchhhhHHhhhhhhhhcCCCccchhhhhhcccccceeeeeeccCChHHHHHHHHHHHHHhccC--C-
Q 036440 69 QSIPPVCMIPLRLGYSHIKIMIAFFIRLVVGRGRLHIFSWLNFMKRVINMQIIIHVFGDEESVKILKICREAITSK--A- 145 (181)
Q Consensus 69 ~~~P~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~iLHdw~D~~~~~iL~~~~~a~~~~--g- 145 (181)
+++|.+|+| +|++|||+|+|++|++||++++.||+|| |
T Consensus 154 ~~~P~~D~~---------------------------------------~l~~vLh~~~d~~~~~iL~~~~~al~pg~~g~ 194 (241)
T PF00891_consen 154 DPLPVADVY---------------------------------------LLRHVLHDWSDEDCVKILRNAAAALKPGKDGR 194 (241)
T ss_dssp TCCSSESEE---------------------------------------EEESSGGGS-HHHHHHHHHHHHHHSEECTTEE
T ss_pred hhhccccce---------------------------------------eeehhhhhcchHHHHHHHHHHHHHhCCCCCCe
Confidence 999999999 9999999999999999999999999998 7
Q ss_pred ----------------------------------ccCCHHHHHHHHH
Q 036440 146 ----------------------------------KLSTEKELESLFV 158 (181)
Q Consensus 146 ----------------------------------~eRt~~E~~~Ll~ 158 (181)
++||.+||++||.
T Consensus 195 llI~e~~~~~~~~~~~~~~~~~~~dl~ml~~~~G~~rt~~e~~~ll~ 241 (241)
T PF00891_consen 195 LLIIEMVLPDDRTGPPSAEMDALFDLNMLVLTGGKERTEEEWEALLK 241 (241)
T ss_dssp EEEEEEEECSSSSSHHHHHHHHHHHHHHHHHHSSS-EEHHHHHHHHH
T ss_pred EEEEeeccCCCCCCchHHHHHHHHHHHHHHhcCCCCcCHHHHHHHhC
Confidence 9999999999984
|
The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This domain includes a range of O-methyltransferases some of which utilise S-adenosyl methionine as substrate []. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. In eukaryotes, DNA methylation has been implicated in the control of several cellular processes, including differentiation, gene regulation, and embryonic development. O-methyltransferases have a common catalytic domain structure, which might be universal among S-adenosyl-L-methionine (AdoMet)-dependent methyltransferases []. Comparative analysis of the predicted amino acid sequences of a number of plant O-methyltransferase cDNA clones show that they share some 32-71% sequence identity, and can be grouped according to the different compounds they utilise as substrates [].; GO: 0008171 O-methyltransferase activity; PDB: 1FPQ_A 1FP1_D 3P9K_B 3P9I_D 3P9C_A 3I53_A 3I5U_A 3I64_A 3I58_A 1ZG3_A .... |
| >KOG3178 consensus Hydroxyindole-O-methyltransferase and related SAM-dependent methyltransferases [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.9e-27 Score=212.41 Aligned_cols=140 Identities=31% Similarity=0.388 Sum_probs=133.2
Q ss_pred ChHHHhhccccchhHHHHHHhhhhhcCCCeEEEec------------CCCCceEEEeechhhhhhhccC-CCceEEecCC
Q 036440 1 FNQAVASDTQTVTASLALKYCKQIFERLGSLVDVG------------AFPCVKCTEFDQPHVVANLLDT-NNLKYLADDF 67 (181)
Q Consensus 1 F~~aM~~~s~~~~~~~~l~~~~~d~~~~~~lvDvG------------~~P~l~~~~~DlP~Vv~~a~~~-~ri~~~~gDf 67 (181)
||++|...+.... ..+++.|. .|+++.++|||| .||++++++||+|+|++.+..- +.|+++.|||
T Consensus 153 ~~~sm~~l~~~~~-~~il~~~~-Gf~~v~~avDvGgGiG~v~k~ll~~fp~ik~infdlp~v~~~a~~~~~gV~~v~gdm 230 (342)
T KOG3178|consen 153 FNGSMSFLSTLVM-KKILEVYT-GFKGVNVAVDVGGGIGRVLKNLLSKYPHIKGINFDLPFVLAAAPYLAPGVEHVAGDM 230 (342)
T ss_pred HHHHHHHHHHHHH-Hhhhhhhc-ccccCceEEEcCCcHhHHHHHHHHhCCCCceeecCHHHHHhhhhhhcCCcceecccc
Confidence 6889999998888 88999997 599999999999 9999999999999999999865 8899999999
Q ss_pred CCCCCCcceEeccccchhhhHHhhhhhhhhcCCCccchhhhhhcccccceeeeeeccCChHHHHHHHHHHHHHhccCC--
Q 036440 68 FQSIPPVCMIPLRLGYSHIKIMIAFFIRLVVGRGRLHIFSWLNFMKRVINMQIIIHVFGDEESVKILKICREAITSKA-- 145 (181)
Q Consensus 68 f~~~P~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~iLHdw~D~~~~~iL~~~~~a~~~~g-- 145 (181)
|+++|.+|+| +|++|||||+|++|++||+||.++++|+|
T Consensus 231 fq~~P~~daI---------------------------------------~mkWiLhdwtDedcvkiLknC~~sL~~~GkI 271 (342)
T KOG3178|consen 231 FQDTPKGDAI---------------------------------------WMKWILHDWTDEDCVKILKNCKKSLPPGGKI 271 (342)
T ss_pred cccCCCcCeE---------------------------------------EEEeecccCChHHHHHHHHHHHHhCCCCCEE
Confidence 9989999999 99999999999999999999999999999
Q ss_pred -----------------------------------ccCCHHHHHHHHHhCCCeEEEEEEcCCCCeEEEEEC
Q 036440 146 -----------------------------------KLSTEKELESLFVEVHFHHYKITPLFGLPSLIEVYP 181 (181)
Q Consensus 146 -----------------------------------~eRt~~E~~~Ll~~aGf~~~~i~~~~~~~~viE~~~ 181 (181)
+|||.+||+.++.++||...++.-.+...++||++|
T Consensus 272 iv~E~V~p~e~~~dd~~s~v~~~~d~lm~~~~~~Gkert~~e~q~l~~~~gF~~~~~~~~~~~~~~Ie~~k 342 (342)
T KOG3178|consen 272 IVVENVTPEEDKFDDIDSSVTRDMDLLMLTQTSGGKERTLKEFQALLPEEGFPVCMVALTAYSYSVIEFHK 342 (342)
T ss_pred EEEeccCCCCCCccccccceeehhHHHHHHHhccceeccHHHHHhcchhhcCceeEEEeccCccchheeCC
Confidence 999999999999999999999999988899999986
|
|
| >TIGR02716 C20_methyl_CrtF C-20 methyltransferase BchU | Back alignment and domain information |
|---|
Probab=99.78 E-value=2.2e-18 Score=148.42 Aligned_cols=125 Identities=14% Similarity=0.266 Sum_probs=104.3
Q ss_pred HHHhhccccchhHHHHHHhhhhhcCCCeEEEec------------CCCCceEEEeechhhhhhhc-------cCCCceEE
Q 036440 3 QAVASDTQTVTASLALKYCKQIFERLGSLVDVG------------AFPCVKCTEFDQPHVVANLL-------DTNNLKYL 63 (181)
Q Consensus 3 ~aM~~~s~~~~~~~~l~~~~~d~~~~~~lvDvG------------~~P~l~~~~~DlP~Vv~~a~-------~~~ri~~~ 63 (181)
.+|+..+....++.+++.. ++++..++|||| +||+++++++|+|++++.++ ..+||+++
T Consensus 127 ~~~~~~~~~~~~~~l~~~~--~~~~~~~vlDiG~G~G~~~~~~~~~~p~~~~~~~D~~~~~~~a~~~~~~~gl~~rv~~~ 204 (306)
T TIGR02716 127 EEIHRSNAKFAIQLLLEEA--KLDGVKKMIDVGGGIGDISAAMLKHFPELDSTILNLPGAIDLVNENAAEKGVADRMRGI 204 (306)
T ss_pred HHHHHhcchhHHHHHHHHc--CCCCCCEEEEeCCchhHHHHHHHHHCCCCEEEEEecHHHHHHHHHHHHhCCccceEEEE
Confidence 4444333222226677887 799999999999 89999999999999988664 36799999
Q ss_pred ecCCCC-CCCCcceEeccccchhhhHHhhhhhhhhcCCCccchhhhhhcccccceeeeeeccCChHHHHHHHHHHHHHhc
Q 036440 64 ADDFFQ-SIPPVCMIPLRLGYSHIKIMIAFFIRLVVGRGRLHIFSWLNFMKRVINMQIIIHVFGDEESVKILKICREAIT 142 (181)
Q Consensus 64 ~gDff~-~~P~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~iLHdw~D~~~~~iL~~~~~a~~ 142 (181)
++|+|+ ++|.+|+| +++++||+|+++.+.++|++++++|+
T Consensus 205 ~~d~~~~~~~~~D~v---------------------------------------~~~~~lh~~~~~~~~~il~~~~~~L~ 245 (306)
T TIGR02716 205 AVDIYKESYPEADAV---------------------------------------LFCRILYSANEQLSTIMCKKAFDAMR 245 (306)
T ss_pred ecCccCCCCCCCCEE---------------------------------------EeEhhhhcCChHHHHHHHHHHHHhcC
Confidence 999995 57778999 89999999999999999999999999
Q ss_pred cCC----------------------------------ccCCHHHHHHHHHhCCCeEEEEE
Q 036440 143 SKA----------------------------------KLSTEKELESLFVEVHFHHYKIT 168 (181)
Q Consensus 143 ~~g----------------------------------~eRt~~E~~~Ll~~aGf~~~~i~ 168 (181)
||| .-++.+||+++|++|||+.++++
T Consensus 246 pgG~l~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~ll~~aGf~~v~~~ 305 (306)
T TIGR02716 246 SGGRLLILDMVIDDPENPNFDYLSHYILGAGMPFSVLGFKEQARYKEILESLGYKDVTMV 305 (306)
T ss_pred CCCEEEEEEeccCCCCCchhhHHHHHHHHcccccccccCCCHHHHHHHHHHcCCCeeEec
Confidence 999 12346899999999999998764
|
Members of this protein family are the S-adenosylmethionine-depenedent C-20 methyltransferase BchU, part of the pathway of bacteriochlorophyll c production in photosynthetic green sulfur bacteria. The position modified by this enzyme represents the difference between bacteriochlorophylls c and d; strains lacking this protein can only produced bacteriochlorophyll d. |
| >TIGR00740 methyltransferase, putative | Back alignment and domain information |
|---|
Probab=98.76 E-value=6.5e-08 Score=80.52 Aligned_cols=104 Identities=16% Similarity=0.271 Sum_probs=82.4
Q ss_pred cCCCeEEEec--------------CCCCceEEEeec-hhhhhhhcc-------CCCceEEecCCCC-CCCCcceEecccc
Q 036440 26 ERLGSLVDVG--------------AFPCVKCTEFDQ-PHVVANLLD-------TNNLKYLADDFFQ-SIPPVCMIPLRLG 82 (181)
Q Consensus 26 ~~~~~lvDvG--------------~~P~l~~~~~Dl-P~Vv~~a~~-------~~ri~~~~gDff~-~~P~~d~~~~~~~ 82 (181)
..-.+|||+| .+|+.+.+.+|+ |..++.+.. ..+++++.+|+.+ +.|..|++
T Consensus 52 ~~~~~iLDlGcG~G~~~~~l~~~~~~p~~~v~gvD~s~~ml~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~d~v----- 126 (239)
T TIGR00740 52 TPDSNVYDLGCSRGAATLSARRNINQPNVKIIGIDNSQPMVERCRQHIAAYHSEIPVEILCNDIRHVEIKNASMV----- 126 (239)
T ss_pred CCCCEEEEecCCCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEECChhhCCCCCCCEE-----
Confidence 3556899999 258999999999 788776642 3589999999986 35557777
Q ss_pred chhhhHHhhhhhhhhcCCCccchhhhhhcccccceeeeeeccCChHHHHHHHHHHHHHhccCC-----------------
Q 036440 83 YSHIKIMIAFFIRLVVGRGRLHIFSWLNFMKRVINMQIIIHVFGDEESVKILKICREAITSKA----------------- 145 (181)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~iLHdw~D~~~~~iL~~~~~a~~~~g----------------- 145 (181)
+...++|.+++++..++|++++.+++|||
T Consensus 127 ----------------------------------~~~~~l~~~~~~~~~~~l~~i~~~LkpgG~l~i~d~~~~~~~~~~~ 172 (239)
T TIGR00740 127 ----------------------------------ILNFTLQFLPPEDRIALLTKIYEGLNPNGVLVLSEKFRFEDTKINH 172 (239)
T ss_pred ----------------------------------eeecchhhCCHHHHHHHHHHHHHhcCCCeEEEEeecccCCCHhHHH
Confidence 66777888888778888888888888888
Q ss_pred -------------------------------ccCCHHHHHHHHHhCCCeEEEEE
Q 036440 146 -------------------------------KLSTEKELESLFVEVHFHHYKIT 168 (181)
Q Consensus 146 -------------------------------~eRt~~E~~~Ll~~aGf~~~~i~ 168 (181)
+..|.+|++.++++|||+.+.+.
T Consensus 173 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~s~~~~~~~l~~aGF~~~~~~ 226 (239)
T TIGR00740 173 LLIDLHHQFKRANGYSELEISQKRTALENVMRTDSIETHKARLKNVGFSHVELW 226 (239)
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHhccCCCCCHHHHHHHHHHcCCchHHHH
Confidence 24688999999999999976543
|
A simple BLAST search finds all members of this family and weaker hits to a large number of known and predicted methyltransferases. A single iteration with PSI-BLAST, keeping only clear members of the family, leads to a large number of highly significant hits to a set of known and predicted methyltransferases with a large repertoire of different specifities. This model is restricted to a subfamily found so far only in the Proteobacteria, sharing consistent length, full-length homology, and on average better than 35 % identity. It is reasonable to predict equivalent function within this subfamily. |
| >PRK15451 tRNA cmo(5)U34 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.67 E-value=2.2e-07 Score=78.42 Aligned_cols=103 Identities=12% Similarity=0.219 Sum_probs=82.0
Q ss_pred cCCCeEEEec--------------CCCCceEEEeec-hhhhhhhcc-------CCCceEEecCCCC-CCCCcceEecccc
Q 036440 26 ERLGSLVDVG--------------AFPCVKCTEFDQ-PHVVANLLD-------TNNLKYLADDFFQ-SIPPVCMIPLRLG 82 (181)
Q Consensus 26 ~~~~~lvDvG--------------~~P~l~~~~~Dl-P~Vv~~a~~-------~~ri~~~~gDff~-~~P~~d~~~~~~~ 82 (181)
..-.+|+||| .+|..+.+.+|. |..++.+.. .++++++.+|+.+ +.|..|++
T Consensus 55 ~~~~~vLDlGcGtG~~~~~l~~~~~~~~~~v~gvD~S~~ml~~A~~~~~~~~~~~~v~~~~~d~~~~~~~~~D~v----- 129 (247)
T PRK15451 55 QPGTQVYDLGCSLGAATLSVRRNIHHDNCKIIAIDNSPAMIERCRRHIDAYKAPTPVDVIEGDIRDIAIENASMV----- 129 (247)
T ss_pred CCCCEEEEEcccCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEeCChhhCCCCCCCEE-----
Confidence 3457899999 268999999998 788776642 4589999999875 34457877
Q ss_pred chhhhHHhhhhhhhhcCCCccchhhhhhcccccceeeeeeccCChHHHHHHHHHHHHHhccCC-----------------
Q 036440 83 YSHIKIMIAFFIRLVVGRGRLHIFSWLNFMKRVINMQIIIHVFGDEESVKILKICREAITSKA----------------- 145 (181)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~iLHdw~D~~~~~iL~~~~~a~~~~g----------------- 145 (181)
++..++|-.++++..++|++++.+++|||
T Consensus 130 ----------------------------------v~~~~l~~l~~~~~~~~l~~i~~~LkpGG~l~l~e~~~~~~~~~~~ 175 (247)
T PRK15451 130 ----------------------------------VLNFTLQFLEPSERQALLDKIYQGLNPGGALVLSEKFSFEDAKVGE 175 (247)
T ss_pred ----------------------------------ehhhHHHhCCHHHHHHHHHHHHHhcCCCCEEEEEEecCCCcchhHH
Confidence 66677787777777888888888888888
Q ss_pred -------------------------------ccCCHHHHHHHHHhCCCeEEEE
Q 036440 146 -------------------------------KLSTEKELESLFVEVHFHHYKI 167 (181)
Q Consensus 146 -------------------------------~eRt~~E~~~Ll~~aGf~~~~i 167 (181)
+.-|.++..+||++|||+.+.+
T Consensus 176 ~~~~~~~~~~~~~g~s~~ei~~~~~~~~~~~~~~~~~~~~~~L~~aGF~~v~~ 228 (247)
T PRK15451 176 LLFNMHHDFKRANGYSELEISQKRSMLENVMLTDSVETHKARLHKAGFEHSEL 228 (247)
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHhhcccCCHHHHHHHHHHcCchhHHH
Confidence 4568999999999999987654
|
|
| >TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase | Back alignment and domain information |
|---|
Probab=98.59 E-value=1.9e-06 Score=70.71 Aligned_cols=122 Identities=13% Similarity=0.178 Sum_probs=81.3
Q ss_pred HHHHhhhhhcCCCeEEEec------------C-CCCceEEEeec-hhhhhhhcc------CCCceEEecCCCC-CCCC--
Q 036440 17 ALKYCKQIFERLGSLVDVG------------A-FPCVKCTEFDQ-PHVVANLLD------TNNLKYLADDFFQ-SIPP-- 73 (181)
Q Consensus 17 ~l~~~~~d~~~~~~lvDvG------------~-~P~l~~~~~Dl-P~Vv~~a~~------~~ri~~~~gDff~-~~P~-- 73 (181)
+++.. +...-.+|||+| . .|..+.+.+|+ |..++.+.. .++++++.+|..+ ++|.
T Consensus 37 ~l~~l--~~~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~ 114 (231)
T TIGR02752 37 TMKRM--NVQAGTSALDVCCGTADWSIALAEAVGPEGHVIGLDFSENMLSVGRQKVKDAGLHNVELVHGNAMELPFDDNS 114 (231)
T ss_pred HHHhc--CCCCCCEEEEeCCCcCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHhcCCCceEEEEechhcCCCCCCC
Confidence 44444 445557999999 3 47789999999 566654431 3589999999876 3443
Q ss_pred cceEeccccchhhhHHhhhhhhhhcCCCccchhhhhhcccccceeeeeeccCChHHHHHHHHHHHHHhccCC--------
Q 036440 74 VCMIPLRLGYSHIKIMIAFFIRLVVGRGRLHIFSWLNFMKRVINMQIIIHVFGDEESVKILKICREAITSKA-------- 145 (181)
Q Consensus 74 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~iLHdw~D~~~~~iL~~~~~a~~~~g-------- 145 (181)
.|++ ++...+|..++- .++|+++...++|||
T Consensus 115 fD~V---------------------------------------~~~~~l~~~~~~--~~~l~~~~~~Lk~gG~l~~~~~~ 153 (231)
T TIGR02752 115 FDYV---------------------------------------TIGFGLRNVPDY--MQVLREMYRVVKPGGKVVCLETS 153 (231)
T ss_pred ccEE---------------------------------------EEecccccCCCH--HHHHHHHHHHcCcCeEEEEEECC
Confidence 5777 444444444433 245555555555555
Q ss_pred -----------------------------------------ccCCHHHHHHHHHhCCCeEEEEEEcC-CCCeEEEEEC
Q 036440 146 -----------------------------------------KLSTEKELESLFVEVHFHHYKITPLF-GLPSLIEVYP 181 (181)
Q Consensus 146 -----------------------------------------~eRt~~E~~~Ll~~aGf~~~~i~~~~-~~~~viE~~~ 181 (181)
+-.|.+|++++|+++||+++++.+.. |..+++-+++
T Consensus 154 ~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~aGf~~~~~~~~~~g~~~~~~~~~ 231 (231)
T TIGR02752 154 QPTIPGFKQLYFFYFKYIMPLFGKLFAKSYKEYSWLQESTRDFPGMDELAEMFQEAGFKDVEVKSYTGGVAAMHMGFK 231 (231)
T ss_pred CCCChHHHHHHHHHHcChhHHhhHHhcCCHHHHHHHHHHHHHcCCHHHHHHHHHHcCCCeeEEEEcccceEEEEEEEC
Confidence 22466899999999999999998876 5556665554
|
MenG is a generic term for a methyltransferase that catalyzes the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species. |
| >PTZ00098 phosphoethanolamine N-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.56 E-value=1.3e-06 Score=74.75 Aligned_cols=116 Identities=16% Similarity=0.205 Sum_probs=88.0
Q ss_pred HHHHHHhhhhhcCCCeEEEec-----------CCCCceEEEeec-hhhhhhhcc----CCCceEEecCCCC-CCCC--cc
Q 036440 15 SLALKYCKQIFERLGSLVDVG-----------AFPCVKCTEFDQ-PHVVANLLD----TNNLKYLADDFFQ-SIPP--VC 75 (181)
Q Consensus 15 ~~~l~~~~~d~~~~~~lvDvG-----------~~P~l~~~~~Dl-P~Vv~~a~~----~~ri~~~~gDff~-~~P~--~d 75 (181)
..+++.. .+..-.+||||| +..+.+.+.+|+ |..++.+.. .++++++.+|+.+ ++|. .|
T Consensus 42 ~~~l~~l--~l~~~~~VLDiGcG~G~~a~~la~~~~~~v~giD~s~~~~~~a~~~~~~~~~i~~~~~D~~~~~~~~~~FD 119 (263)
T PTZ00098 42 TKILSDI--ELNENSKVLDIGSGLGGGCKYINEKYGAHVHGVDICEKMVNIAKLRNSDKNKIEFEANDILKKDFPENTFD 119 (263)
T ss_pred HHHHHhC--CCCCCCEEEEEcCCCChhhHHHHhhcCCEEEEEECCHHHHHHHHHHcCcCCceEEEECCcccCCCCCCCeE
Confidence 5566666 566778999999 223568999998 455555432 4689999999985 4554 58
Q ss_pred eEeccccchhhhHHhhhhhhhhcCCCccchhhhhhcccccceeeeeeccCChHHHHHHHHHHHHHhccCC----------
Q 036440 76 MIPLRLGYSHIKIMIAFFIRLVVGRGRLHIFSWLNFMKRVINMQIIIHVFGDEESVKILKICREAITSKA---------- 145 (181)
Q Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~iLHdw~D~~~~~iL~~~~~a~~~~g---------- 145 (181)
++ +....+|.+++++..++|++++..++|||
T Consensus 120 ~V---------------------------------------~s~~~l~h~~~~d~~~~l~~i~r~LkPGG~lvi~d~~~~ 160 (263)
T PTZ00098 120 MI---------------------------------------YSRDAILHLSYADKKKLFEKCYKWLKPNGILLITDYCAD 160 (263)
T ss_pred EE---------------------------------------EEhhhHHhCCHHHHHHHHHHHHHHcCCCcEEEEEEeccc
Confidence 88 66666666777778889999999999998
Q ss_pred ------------------ccCCHHHHHHHHHhCCCeEEEEEEcC
Q 036440 146 ------------------KLSTEKELESLFVEVHFHHYKITPLF 171 (181)
Q Consensus 146 ------------------~eRt~~E~~~Ll~~aGf~~~~i~~~~ 171 (181)
...+.++|.++|+++||+++....+.
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGF~~v~~~d~~ 204 (263)
T PTZ00098 161 KIENWDEEFKAYIKKRKYTLIPIQEYGDLIKSCNFQNVVAKDIS 204 (263)
T ss_pred cccCcHHHHHHHHHhcCCCCCCHHHHHHHHHHCCCCeeeEEeCc
Confidence 12477999999999999999887653
|
|
| >PRK00216 ubiE ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=98.47 E-value=6.5e-06 Score=66.66 Aligned_cols=114 Identities=16% Similarity=0.200 Sum_probs=79.8
Q ss_pred CCCeEEEec------------CCC-CceEEEeec-hhhhhhhcc-------CCCceEEecCCCCC-CC--CcceEecccc
Q 036440 27 RLGSLVDVG------------AFP-CVKCTEFDQ-PHVVANLLD-------TNNLKYLADDFFQS-IP--PVCMIPLRLG 82 (181)
Q Consensus 27 ~~~~lvDvG------------~~P-~l~~~~~Dl-P~Vv~~a~~-------~~ri~~~~gDff~~-~P--~~d~~~~~~~ 82 (181)
.-.+++|+| .+| ..+.+.+|+ |..++.+.. .+++++..+|+.+. .+ ..|++
T Consensus 51 ~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~I----- 125 (239)
T PRK00216 51 PGDKVLDLACGTGDLAIALAKAVGKTGEVVGLDFSEGMLAVGREKLRDLGLSGNVEFVQGDAEALPFPDNSFDAV----- 125 (239)
T ss_pred CCCeEEEeCCCCCHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHhhcccccccCeEEEecccccCCCCCCCccEE-----
Confidence 346899999 566 689999998 455554432 36799999999863 22 25777
Q ss_pred chhhhHHhhhhhhhhcCCCccchhhhhhcccccceeeeeeccCChHHHHHHHHHHHHHhccCC-----------------
Q 036440 83 YSHIKIMIAFFIRLVVGRGRLHIFSWLNFMKRVINMQIIIHVFGDEESVKILKICREAITSKA----------------- 145 (181)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~iLHdw~D~~~~~iL~~~~~a~~~~g----------------- 145 (181)
++..++|.+++. ..+|+++...++++|
T Consensus 126 ----------------------------------~~~~~l~~~~~~--~~~l~~~~~~L~~gG~li~~~~~~~~~~~~~~ 169 (239)
T PRK00216 126 ----------------------------------TIAFGLRNVPDI--DKALREMYRVLKPGGRLVILEFSKPTNPPLKK 169 (239)
T ss_pred ----------------------------------EEecccccCCCH--HHHHHHHHHhccCCcEEEEEEecCCCchHHHH
Confidence 455555555543 345666666666665
Q ss_pred --------------------------------ccCCHHHHHHHHHhCCCeEEEEEEc-CCCCeEEEEEC
Q 036440 146 --------------------------------KLSTEKELESLFVEVHFHHYKITPL-FGLPSLIEVYP 181 (181)
Q Consensus 146 --------------------------------~eRt~~E~~~Ll~~aGf~~~~i~~~-~~~~~viE~~~ 181 (181)
...|.++|..+|+++||+.+++... .+..+++.+++
T Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~~~~~~~~~~~~~~~~~~~ 238 (239)
T PRK00216 170 AYDFYLFKVLPLIGKLISKNAEAYSYLAESIRAFPDQEELAAMLEEAGFERVRYRNLTGGIVALHVGYK 238 (239)
T ss_pred HHHHHHHhhhHHHHHHHcCCcHHHHHHHHHHHhCCCHHHHHHHHHhCCCceeeeeeeecCcEEEEEEec
Confidence 1236788999999999999999875 46778888764
|
|
| >TIGR01934 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis methyltransferases | Back alignment and domain information |
|---|
Probab=98.45 E-value=6e-06 Score=66.19 Aligned_cols=115 Identities=14% Similarity=0.132 Sum_probs=81.5
Q ss_pred cCCCeEEEec------------CCCC-ceEEEeec-hhhhhhhc----cCCCceEEecCCCCC-CCC--cceEeccccch
Q 036440 26 ERLGSLVDVG------------AFPC-VKCTEFDQ-PHVVANLL----DTNNLKYLADDFFQS-IPP--VCMIPLRLGYS 84 (181)
Q Consensus 26 ~~~~~lvDvG------------~~P~-l~~~~~Dl-P~Vv~~a~----~~~ri~~~~gDff~~-~P~--~d~~~~~~~~~ 84 (181)
..-.+++|+| ++|. .+.+.+|. |..++.+. ..++++++.+|+.+. .+. .|++
T Consensus 38 ~~~~~vldiG~G~G~~~~~~~~~~~~~~~~~~iD~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~i------- 110 (223)
T TIGR01934 38 FKGQKVLDVACGTGDLAIELAKSAPDRGKVTGVDFSSEMLEVAKKKSELPLNIEFIQADAEALPFEDNSFDAV------- 110 (223)
T ss_pred CCCCeEEEeCCCCChhHHHHHHhcCCCceEEEEECCHHHHHHHHHHhccCCCceEEecchhcCCCCCCcEEEE-------
Confidence 3457999999 5676 78999998 55555543 246899999999863 332 5777
Q ss_pred hhhHHhhhhhhhhcCCCccchhhhhhcccccceeeeeeccCChHHHHHHHHHHHHHhccCC-------------------
Q 036440 85 HIKIMIAFFIRLVVGRGRLHIFSWLNFMKRVINMQIIIHVFGDEESVKILKICREAITSKA------------------- 145 (181)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~iLHdw~D~~~~~iL~~~~~a~~~~g------------------- 145 (181)
++...+|...+ ...+|+++...++|||
T Consensus 111 --------------------------------~~~~~~~~~~~--~~~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~~~~ 156 (223)
T TIGR01934 111 --------------------------------TIAFGLRNVTD--IQKALREMYRVLKPGGRLVILEFSKPANALLKKFY 156 (223)
T ss_pred --------------------------------EEeeeeCCccc--HHHHHHHHHHHcCCCcEEEEEEecCCCchhhHHHH
Confidence 55555555544 3356666666666666
Q ss_pred ------------------------------ccCCHHHHHHHHHhCCCeEEEEEEcCC-CCeEEEEEC
Q 036440 146 ------------------------------KLSTEKELESLFVEVHFHHYKITPLFG-LPSLIEVYP 181 (181)
Q Consensus 146 ------------------------------~eRt~~E~~~Ll~~aGf~~~~i~~~~~-~~~viE~~~ 181 (181)
...+.+||+.+|+++||+.+++.+..+ ...++++++
T Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~~~~~~~~~~~~~~~~~~~ 223 (223)
T TIGR01934 157 KFYLKNVLPSIGGLISKNAEAYTYLPESIRAFPSQEELAAMLKEAGFEEVRYRSLTFGVAAIHVGKK 223 (223)
T ss_pred HHHHHHhhhhhhhhhcCCchhhHHHHHHHHhCCCHHHHHHHHHHcCCccceeeeeecceeeEEEecC
Confidence 112678899999999999999988865 467888765
|
Note that a number of non-orthologous genes which are members of pfam03737 have been erroneously annotated as MenG methyltransferases. |
| >PRK14103 trans-aconitate 2-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.33 E-value=8.3e-06 Score=68.63 Aligned_cols=68 Identities=19% Similarity=0.194 Sum_probs=48.4
Q ss_pred HHHHHHhhhhhcCCCeEEEec------------CCCCceEEEeec-hhhhhhhccCCCceEEecCCCCCCC--CcceEec
Q 036440 15 SLALKYCKQIFERLGSLVDVG------------AFPCVKCTEFDQ-PHVVANLLDTNNLKYLADDFFQSIP--PVCMIPL 79 (181)
Q Consensus 15 ~~~l~~~~~d~~~~~~lvDvG------------~~P~l~~~~~Dl-P~Vv~~a~~~~ri~~~~gDff~~~P--~~d~~~~ 79 (181)
..+++.+ ....-.+|||+| ++|+.+.+.+|+ |..++.+.. .+++++.+|+.+-.| ..|++..
T Consensus 19 ~~ll~~l--~~~~~~~vLDlGcG~G~~~~~l~~~~p~~~v~gvD~s~~~~~~a~~-~~~~~~~~d~~~~~~~~~fD~v~~ 95 (255)
T PRK14103 19 YDLLARV--GAERARRVVDLGCGPGNLTRYLARRWPGAVIEALDSSPEMVAAARE-RGVDARTGDVRDWKPKPDTDVVVS 95 (255)
T ss_pred HHHHHhC--CCCCCCEEEEEcCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHh-cCCcEEEcChhhCCCCCCceEEEE
Confidence 4566666 456668999999 679999999999 677777654 478999999864322 3688844
Q ss_pred cccchh
Q 036440 80 RLGYSH 85 (181)
Q Consensus 80 ~~~~~~ 85 (181)
+..+.+
T Consensus 96 ~~~l~~ 101 (255)
T PRK14103 96 NAALQW 101 (255)
T ss_pred ehhhhh
Confidence 444333
|
|
| >PLN02490 MPBQ/MSBQ methyltransferase | Back alignment and domain information |
|---|
Probab=98.30 E-value=7e-06 Score=73.90 Aligned_cols=104 Identities=21% Similarity=0.227 Sum_probs=83.4
Q ss_pred CCeEEEec------------CCCCceEEEeec-hhhhhhhcc---CCCceEEecCCCC-CCCC--cceEeccccchhhhH
Q 036440 28 LGSLVDVG------------AFPCVKCTEFDQ-PHVVANLLD---TNNLKYLADDFFQ-SIPP--VCMIPLRLGYSHIKI 88 (181)
Q Consensus 28 ~~~lvDvG------------~~P~l~~~~~Dl-P~Vv~~a~~---~~ri~~~~gDff~-~~P~--~d~~~~~~~~~~~~~ 88 (181)
-.+|||+| .+|..+.+.+|+ |+.++.+.. ..+++++.+|+.+ ++|. .|++
T Consensus 114 ~~~VLDLGcGtG~~~l~La~~~~~~~VtgVD~S~~mL~~A~~k~~~~~i~~i~gD~e~lp~~~~sFDvV----------- 182 (340)
T PLN02490 114 NLKVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECKIIEGDAEDLPFPTDYADRY----------- 182 (340)
T ss_pred CCEEEEEecCCcHHHHHHHHHCCCCEEEEEECCHHHHHHHHHhhhccCCeEEeccHHhCCCCCCceeEE-----------
Confidence 46899999 567788999998 566665543 4589999999875 3443 5888
Q ss_pred HhhhhhhhhcCCCccchhhhhhcccccceeeeeeccCChHHHHHHHHHHHHHhccCCc----------------------
Q 036440 89 MIAFFIRLVVGRGRLHIFSWLNFMKRVINMQIIIHVFGDEESVKILKICREAITSKAK---------------------- 146 (181)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~iLHdw~D~~~~~iL~~~~~a~~~~g~---------------------- 146 (181)
+....+|.|+|.+ ++|+++++.++|||+
T Consensus 183 ----------------------------Is~~~L~~~~d~~--~~L~e~~rvLkPGG~LvIi~~~~p~~~~~r~~~~~~~ 232 (340)
T PLN02490 183 ----------------------------VSAGSIEYWPDPQ--RGIKEAYRVLKIGGKACLIGPVHPTFWLSRFFADVWM 232 (340)
T ss_pred ----------------------------EEcChhhhCCCHH--HHHHHHHHhcCCCcEEEEEEecCcchhHHHHhhhhhc
Confidence 7888899999875 589999999999991
Q ss_pred -cCCHHHHHHHHHhCCCeEEEEEEcCC
Q 036440 147 -LSTEKELESLFVEVHFHHYKITPLFG 172 (181)
Q Consensus 147 -eRt~~E~~~Ll~~aGf~~~~i~~~~~ 172 (181)
-.+.+|+.++|+++||+.+++..+..
T Consensus 233 ~~~t~eEl~~lL~~aGF~~V~i~~i~~ 259 (340)
T PLN02490 233 LFPKEEEYIEWFTKAGFKDVKLKRIGP 259 (340)
T ss_pred cCCCHHHHHHHHHHCCCeEEEEEEcCh
Confidence 24789999999999999999887654
|
|
| >PRK08287 cobalt-precorrin-6Y C(15)-methyltransferase; Validated | Back alignment and domain information |
|---|
Probab=98.24 E-value=1.1e-05 Score=64.72 Aligned_cols=118 Identities=15% Similarity=0.169 Sum_probs=81.6
Q ss_pred HhhccccchhHHHHHHhhhhhcCCCeEEEec------------CCCCceEEEeec-hhhhhhhcc------CCCceEEec
Q 036440 5 VASDTQTVTASLALKYCKQIFERLGSLVDVG------------AFPCVKCTEFDQ-PHVVANLLD------TNNLKYLAD 65 (181)
Q Consensus 5 M~~~s~~~~~~~~l~~~~~d~~~~~~lvDvG------------~~P~l~~~~~Dl-P~Vv~~a~~------~~ri~~~~g 65 (181)
|...+.......+++.. +...-.++||+| ++|+.+.+.+|. |..++.+.. .++++++.+
T Consensus 11 ~~~~~~~~~r~~~~~~l--~~~~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~n~~~~~~~~i~~~~~ 88 (187)
T PRK08287 11 KVPMTKEEVRALALSKL--ELHRAKHLIDVGAGTGSVSIEAALQFPSLQVTAIERNPDALRLIKENRQRFGCGNIDIIPG 88 (187)
T ss_pred CCCCchHHHHHHHHHhc--CCCCCCEEEEECCcCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhCCCCeEEEec
Confidence 44444444312234455 456678999999 689999999999 666665532 257899999
Q ss_pred CCCCCCCC-cceEeccccchhhhHHhhhhhhhhcCCCccchhhhhhcccccceeeeeeccCChHHHHHHHHHHHHHhccC
Q 036440 66 DFFQSIPP-VCMIPLRLGYSHIKIMIAFFIRLVVGRGRLHIFSWLNFMKRVINMQIIIHVFGDEESVKILKICREAITSK 144 (181)
Q Consensus 66 Dff~~~P~-~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~iLHdw~D~~~~~iL~~~~~a~~~~ 144 (181)
|....++. .|++ ++....+. -..+++.+...++|+
T Consensus 89 d~~~~~~~~~D~v---------------------------------------~~~~~~~~-----~~~~l~~~~~~Lk~g 124 (187)
T PRK08287 89 EAPIELPGKADAI---------------------------------------FIGGSGGN-----LTAIIDWSLAHLHPG 124 (187)
T ss_pred CchhhcCcCCCEE---------------------------------------EECCCccC-----HHHHHHHHHHhcCCC
Confidence 87655544 5776 33332222 245889999999999
Q ss_pred C-------ccCCHHHHHHHHHhCCCeEEEEE
Q 036440 145 A-------KLSTEKELESLFVEVHFHHYKIT 168 (181)
Q Consensus 145 g-------~eRt~~E~~~Ll~~aGf~~~~i~ 168 (181)
| ..-+.++...++++.||+.+++.
T Consensus 125 G~lv~~~~~~~~~~~~~~~l~~~g~~~~~~~ 155 (187)
T PRK08287 125 GRLVLTFILLENLHSALAHLEKCGVSELDCV 155 (187)
T ss_pred eEEEEEEecHhhHHHHHHHHHHCCCCcceEE
Confidence 9 34577889999999999877654
|
|
| >smart00828 PKS_MT Methyltransferase in polyketide synthase (PKS) enzymes | Back alignment and domain information |
|---|
Probab=98.22 E-value=1.5e-05 Score=65.01 Aligned_cols=101 Identities=12% Similarity=0.156 Sum_probs=77.0
Q ss_pred CeEEEec------------CCCCceEEEeech-hhhhhhc-------cCCCceEEecCCCCC-CCC-cceEeccccchhh
Q 036440 29 GSLVDVG------------AFPCVKCTEFDQP-HVVANLL-------DTNNLKYLADDFFQS-IPP-VCMIPLRLGYSHI 86 (181)
Q Consensus 29 ~~lvDvG------------~~P~l~~~~~DlP-~Vv~~a~-------~~~ri~~~~gDff~~-~P~-~d~~~~~~~~~~~ 86 (181)
++||||| .+|+.+.+.+|+- ..++.+. ..++++++.+|+.+. .|. .|.+
T Consensus 1 ~~vLDiGcG~G~~~~~la~~~~~~~v~gid~s~~~~~~a~~~~~~~gl~~~i~~~~~d~~~~~~~~~fD~I--------- 71 (224)
T smart00828 1 KRVLDFGCGYGSDLIDLAERHPHLQLHGYTISPEQAEVGRERIRALGLQGRIRIFYRDSAKDPFPDTYDLV--------- 71 (224)
T ss_pred CeEEEECCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhcCCCcceEEEecccccCCCCCCCCEe---------
Confidence 3689999 6788899999984 3434332 367899999999754 333 6777
Q ss_pred hHHhhhhhhhhcCCCccchhhhhhcccccceeeeeeccCChHHHHHHHHHHHHHhccCCc--------------------
Q 036440 87 KIMIAFFIRLVVGRGRLHIFSWLNFMKRVINMQIIIHVFGDEESVKILKICREAITSKAK-------------------- 146 (181)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~iLHdw~D~~~~~iL~~~~~a~~~~g~-------------------- 146 (181)
+...++|..+|. ..+|++++..++|||+
T Consensus 72 ------------------------------~~~~~l~~~~~~--~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~ 119 (224)
T smart00828 72 ------------------------------FGFEVIHHIKDK--MDLFSNISRHLKDGGHLVLADFIANLLSAIEHEETT 119 (224)
T ss_pred ------------------------------ehHHHHHhCCCH--HHHHHHHHHHcCCCCEEEEEEcccccCccccccccc
Confidence 666777777663 5799999999999981
Q ss_pred --cCCHHHHHHHHHhCCCeEEEEEEc
Q 036440 147 --LSTEKELESLFVEVHFHHYKITPL 170 (181)
Q Consensus 147 --eRt~~E~~~Ll~~aGf~~~~i~~~ 170 (181)
..|.++|.++++++||+.++....
T Consensus 120 ~~~~s~~~~~~~l~~~Gf~~~~~~~~ 145 (224)
T smart00828 120 SYLVTREEWAELLARNNLRVVEGVDA 145 (224)
T ss_pred cccCCHHHHHHHHHHCCCeEEEeEEC
Confidence 236789999999999999987765
|
|
| >PLN03075 nicotianamine synthase; Provisional | Back alignment and domain information |
|---|
Probab=98.20 E-value=2.1e-05 Score=69.92 Aligned_cols=114 Identities=15% Similarity=0.168 Sum_probs=82.0
Q ss_pred CCCeEEEec--------------CCCCceEEEeec-hhhhhhhc--------cCCCceEEecCCCCCCC---CcceEecc
Q 036440 27 RLGSLVDVG--------------AFPCVKCTEFDQ-PHVVANLL--------DTNNLKYLADDFFQSIP---PVCMIPLR 80 (181)
Q Consensus 27 ~~~~lvDvG--------------~~P~l~~~~~Dl-P~Vv~~a~--------~~~ri~~~~gDff~~~P---~~d~~~~~ 80 (181)
..++|+||| .+|..+++.+|. |..++.|+ .++|++|..+|..+..+ .-|++
T Consensus 123 ~p~~VldIGcGpgpltaiilaa~~~p~~~~~giD~d~~ai~~Ar~~~~~~~gL~~rV~F~~~Da~~~~~~l~~FDlV--- 199 (296)
T PLN03075 123 VPTKVAFVGSGPLPLTSIVLAKHHLPTTSFHNFDIDPSANDVARRLVSSDPDLSKRMFFHTADVMDVTESLKEYDVV--- 199 (296)
T ss_pred CCCEEEEECCCCcHHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHhhhccCccCCcEEEECchhhcccccCCcCEE---
Confidence 568999999 579999999998 44554432 36899999999987543 25888
Q ss_pred ccchhhhHHhhhhhhhhcCCCccchhhhhhcccccceeeeeeccCChHHHHHHHHHHHHHhccCC--ccCCHHHHHHHH-
Q 036440 81 LGYSHIKIMIAFFIRLVVGRGRLHIFSWLNFMKRVINMQIIIHVFGDEESVKILKICREAITSKA--KLSTEKELESLF- 157 (181)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~iLHdw~D~~~~~iL~~~~~a~~~~g--~eRt~~E~~~Ll- 157 (181)
++. +||+|+.++-.++|++++..|+||| -.|+..-.+.+|
T Consensus 200 ------------------------------------F~~-ALi~~dk~~k~~vL~~l~~~LkPGG~Lvlr~~~G~r~~LY 242 (296)
T PLN03075 200 ------------------------------------FLA-ALVGMDKEEKVKVIEHLGKHMAPGALLMLRSAHGARAFLY 242 (296)
T ss_pred ------------------------------------EEe-cccccccccHHHHHHHHHHhcCCCcEEEEecccchHhhcC
Confidence 777 9999999999999999999999999 111111111111
Q ss_pred ------HhCCCeEEEEE-EcCCC-CeEEEEE
Q 036440 158 ------VEVHFHHYKIT-PLFGL-PSLIEVY 180 (181)
Q Consensus 158 ------~~aGf~~~~i~-~~~~~-~~viE~~ 180 (181)
.-.||+...+. |.+.. .|||-++
T Consensus 243 p~v~~~~~~gf~~~~~~~P~~~v~Nsvi~~r 273 (296)
T PLN03075 243 PVVDPCDLRGFEVLSVFHPTDEVINSVIIAR 273 (296)
T ss_pred CCCChhhCCCeEEEEEECCCCCceeeEEEEE
Confidence 11299987665 65543 5777665
|
|
| >PLN02233 ubiquinone biosynthesis methyltransferase | Back alignment and domain information |
|---|
Probab=98.18 E-value=5.9e-05 Score=64.55 Aligned_cols=107 Identities=18% Similarity=0.146 Sum_probs=78.5
Q ss_pred cCCCeEEEec------------C-CCCceEEEeec-hhhhhhhcc---------CCCceEEecCCCC-CCCC--cceEec
Q 036440 26 ERLGSLVDVG------------A-FPCVKCTEFDQ-PHVVANLLD---------TNNLKYLADDFFQ-SIPP--VCMIPL 79 (181)
Q Consensus 26 ~~~~~lvDvG------------~-~P~l~~~~~Dl-P~Vv~~a~~---------~~ri~~~~gDff~-~~P~--~d~~~~ 79 (181)
..-.+++|+| . .|..+.+.+|. |..++.+.. .++++++.+|..+ ++|. .|.+
T Consensus 72 ~~~~~VLDlGcGtG~~~~~la~~~~~~~~V~gvD~S~~ml~~A~~r~~~~~~~~~~~i~~~~~d~~~lp~~~~sfD~V-- 149 (261)
T PLN02233 72 KMGDRVLDLCCGSGDLAFLLSEKVGSDGKVMGLDFSSEQLAVAASRQELKAKSCYKNIEWIEGDATDLPFDDCYFDAI-- 149 (261)
T ss_pred CCCCEEEEECCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhhhhccCCCeEEEEcccccCCCCCCCEeEE--
Confidence 3456899999 3 35678999998 456655531 3589999999865 3443 5888
Q ss_pred cccchhhhHHhhhhhhhhcCCCccchhhhhhcccccceeeeeeccCChHHHHHHHHHHHHHhccCCc-------------
Q 036440 80 RLGYSHIKIMIAFFIRLVVGRGRLHIFSWLNFMKRVINMQIIIHVFGDEESVKILKICREAITSKAK------------- 146 (181)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~iLHdw~D~~~~~iL~~~~~a~~~~g~------------- 146 (181)
++...||.++|. .+.|++++..++|||+
T Consensus 150 -------------------------------------~~~~~l~~~~d~--~~~l~ei~rvLkpGG~l~i~d~~~~~~~~ 190 (261)
T PLN02233 150 -------------------------------------TMGYGLRNVVDR--LKAMQEMYRVLKPGSRVSILDFNKSTQPF 190 (261)
T ss_pred -------------------------------------EEecccccCCCH--HHHHHHHHHHcCcCcEEEEEECCCCCcHH
Confidence 667777777653 4578888888888871
Q ss_pred -----------------------------------cCCHHHHHHHHHhCCCeEEEEEEcCCC
Q 036440 147 -----------------------------------LSTEKELESLFVEVHFHHYKITPLFGL 173 (181)
Q Consensus 147 -----------------------------------eRt~~E~~~Ll~~aGf~~~~i~~~~~~ 173 (181)
-.|.+|+.++|+++||+.++.....+.
T Consensus 191 ~~~~~~~~~~~~~~~~~~~~~~~~~y~~l~~s~~~f~s~~el~~ll~~aGF~~~~~~~~~~g 252 (261)
T PLN02233 191 TTSMQEWMIDNVVVPVATGYGLAKEYEYLKSSINEYLTGEELEKLALEAGFSSAKHYEISGG 252 (261)
T ss_pred HHHHHHHHHhhhhhHHHHHhCChHHHHHHHHHHHhcCCHHHHHHHHHHCCCCEEEEEEcCCC
Confidence 248899999999999999988876543
|
|
| >PF01209 Ubie_methyltran: ubiE/COQ5 methyltransferase family; InterPro: IPR004033 A number of methyltransferases have been shown to share regions of similarities [] | Back alignment and domain information |
|---|
Probab=98.14 E-value=7.3e-06 Score=69.68 Aligned_cols=110 Identities=19% Similarity=0.321 Sum_probs=52.6
Q ss_pred cCCCeEEEec-------------CCCCceEEEeec-hhhhhhhcc------CCCceEEecCCCC-CCCC--cceEecccc
Q 036440 26 ERLGSLVDVG-------------AFPCVKCTEFDQ-PHVVANLLD------TNNLKYLADDFFQ-SIPP--VCMIPLRLG 82 (181)
Q Consensus 26 ~~~~~lvDvG-------------~~P~l~~~~~Dl-P~Vv~~a~~------~~ri~~~~gDff~-~~P~--~d~~~~~~~ 82 (181)
..-.+|||+| ..|..+.+..|+ |..++.+.. ..+|+++.+|.-+ ++|. .|++
T Consensus 46 ~~g~~vLDv~~GtG~~~~~l~~~~~~~~~v~~vD~s~~ML~~a~~k~~~~~~~~i~~v~~da~~lp~~d~sfD~v----- 120 (233)
T PF01209_consen 46 RPGDRVLDVACGTGDVTRELARRVGPNGKVVGVDISPGMLEVARKKLKREGLQNIEFVQGDAEDLPFPDNSFDAV----- 120 (233)
T ss_dssp -S--EEEEET-TTSHHHHHHGGGSS---EEEEEES-HHHHHHHHHHHHHTT--SEEEEE-BTTB--S-TT-EEEE-----
T ss_pred CCCCEEEEeCCChHHHHHHHHHHCCCccEEEEecCCHHHHHHHHHHHHhhCCCCeeEEEcCHHHhcCCCCceeEE-----
Confidence 3446999999 357789999998 556665542 3599999999986 4554 5888
Q ss_pred chhhhHHhhhhhhhhcCCCccchhhhhhcccccceeeeeeccCChHHHHHHHHHHHHHhccCC-----------------
Q 036440 83 YSHIKIMIAFFIRLVVGRGRLHIFSWLNFMKRVINMQIIIHVFGDEESVKILKICREAITSKA----------------- 145 (181)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~iLHdw~D~~~~~iL~~~~~a~~~~g----------------- 145 (181)
.+...||+.+|-+ +.|+.++..++|||
T Consensus 121 ----------------------------------~~~fglrn~~d~~--~~l~E~~RVLkPGG~l~ile~~~p~~~~~~~ 164 (233)
T PF01209_consen 121 ----------------------------------TCSFGLRNFPDRE--RALREMYRVLKPGGRLVILEFSKPRNPLLRA 164 (233)
T ss_dssp ----------------------------------EEES-GGG-SSHH--HHHHHHHHHEEEEEEEEEEEEEB-SSHHHHH
T ss_pred ----------------------------------EHHhhHHhhCCHH--HHHHHHHHHcCCCeEEEEeeccCCCCchhhc
Confidence 7788888888744 47899999999998
Q ss_pred --------------------------------ccCCHHHHHHHHHhCCCeEEEEEEcC-CCCeE
Q 036440 146 --------------------------------KLSTEKELESLFVEVHFHHYKITPLF-GLPSL 176 (181)
Q Consensus 146 --------------------------------~eRt~~E~~~Ll~~aGf~~~~i~~~~-~~~~v 176 (181)
+-.+.+|+.++|+++||+.++..++. |...+
T Consensus 165 ~~~~y~~~ilP~~g~l~~~~~~~Y~yL~~Si~~f~~~~~~~~~l~~~Gf~~v~~~~~~~G~~~i 228 (233)
T PF01209_consen 165 LYKFYFKYILPLIGRLLSGDREAYRYLPESIRRFPSPEELKELLEEAGFKNVEYRPLTFGIVTI 228 (233)
T ss_dssp HHHH------------------------------------------------------------
T ss_pred eeeeeecccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 56688999999999999999987664 43443
|
Apart from the ubiquinone/menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the ubiE gene of Escherichia coli), the ubiquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the COQ5 gene of Saccharomyces cerevisiae) and the menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the MENH gene of Bacillus subtilis), this family also includes methyltransferases involved in biotin and sterol biosynthesis and in phosphatidylethanolamine methylation.; GO: 0008168 methyltransferase activity; PDB: 1VL5_C. |
| >PLN02336 phosphoethanolamine N-methyltransferase | Back alignment and domain information |
|---|
Probab=98.12 E-value=3.8e-05 Score=70.11 Aligned_cols=112 Identities=12% Similarity=0.110 Sum_probs=79.5
Q ss_pred HHHHHHhhhhhcCCCeEEEec-----------CCCCceEEEeech-hhhhhhc-----cCCCceEEecCCCCC-CCC--c
Q 036440 15 SLALKYCKQIFERLGSLVDVG-----------AFPCVKCTEFDQP-HVVANLL-----DTNNLKYLADDFFQS-IPP--V 74 (181)
Q Consensus 15 ~~~l~~~~~d~~~~~~lvDvG-----------~~P~l~~~~~DlP-~Vv~~a~-----~~~ri~~~~gDff~~-~P~--~ 74 (181)
..+++.. .++.-.+||||| ..++.+.+.+|+- ..++.+. ...++++..+|+++. +|. .
T Consensus 256 e~l~~~~--~~~~~~~vLDiGcG~G~~~~~la~~~~~~v~gvDiS~~~l~~A~~~~~~~~~~v~~~~~d~~~~~~~~~~f 333 (475)
T PLN02336 256 KEFVDKL--DLKPGQKVLDVGCGIGGGDFYMAENFDVHVVGIDLSVNMISFALERAIGRKCSVEFEVADCTKKTYPDNSF 333 (475)
T ss_pred HHHHHhc--CCCCCCEEEEEeccCCHHHHHHHHhcCCEEEEEECCHHHHHHHHHHhhcCCCceEEEEcCcccCCCCCCCE
Confidence 4566666 456667999999 3347789999994 5555442 246899999999864 554 5
Q ss_pred ceEeccccchhhhHHhhhhhhhhcCCCccchhhhhhcccccceeeeeeccCChHHHHHHHHHHHHHhccCC---------
Q 036440 75 CMIPLRLGYSHIKIMIAFFIRLVVGRGRLHIFSWLNFMKRVINMQIIIHVFGDEESVKILKICREAITSKA--------- 145 (181)
Q Consensus 75 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~iLHdw~D~~~~~iL~~~~~a~~~~g--------- 145 (181)
|++ +...++|.+.|. .++|+.++..++|||
T Consensus 334 D~I---------------------------------------~s~~~l~h~~d~--~~~l~~~~r~LkpgG~l~i~~~~~ 372 (475)
T PLN02336 334 DVI---------------------------------------YSRDTILHIQDK--PALFRSFFKWLKPGGKVLISDYCR 372 (475)
T ss_pred EEE---------------------------------------EECCcccccCCH--HHHHHHHHHHcCCCeEEEEEEecc
Confidence 887 444455555443 356666677777666
Q ss_pred ------------------ccCCHHHHHHHHHhCCCeEEEEEE
Q 036440 146 ------------------KLSTEKELESLFVEVHFHHYKITP 169 (181)
Q Consensus 146 ------------------~eRt~~E~~~Ll~~aGf~~~~i~~ 169 (181)
...+.+++.++++++||.++.+..
T Consensus 373 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~l~~aGF~~i~~~d 414 (475)
T PLN02336 373 SPGTPSPEFAEYIKQRGYDLHDVQAYGQMLKDAGFDDVIAED 414 (475)
T ss_pred CCCCCcHHHHHHHHhcCCCCCCHHHHHHHHHHCCCeeeeeec
Confidence 467899999999999999987654
|
|
| >TIGR03438 probable methyltransferase | Back alignment and domain information |
|---|
Probab=98.06 E-value=6.4e-05 Score=65.57 Aligned_cols=82 Identities=21% Similarity=0.244 Sum_probs=59.9
Q ss_pred CCCeEEEec------------CCC-CceEEEeechh-hhhhhcc-------CCCceEEecCCCCC--CCC-c---ceEec
Q 036440 27 RLGSLVDVG------------AFP-CVKCTEFDQPH-VVANLLD-------TNNLKYLADDFFQS--IPP-V---CMIPL 79 (181)
Q Consensus 27 ~~~~lvDvG------------~~P-~l~~~~~DlP~-Vv~~a~~-------~~ri~~~~gDff~~--~P~-~---d~~~~ 79 (181)
...+|||+| +.+ ..+.+.+|+.. .++.+.. .-+|..+.+||.+. +|. . +.+
T Consensus 63 ~~~~iLELGcGtG~~t~~Ll~~l~~~~~~~~iDiS~~mL~~a~~~l~~~~p~~~v~~i~gD~~~~~~~~~~~~~~~~~-- 140 (301)
T TIGR03438 63 AGCELVELGSGSSRKTRLLLDALRQPARYVPIDISADALKESAAALAADYPQLEVHGICADFTQPLALPPEPAAGRRL-- 140 (301)
T ss_pred CCCeEEecCCCcchhHHHHHHhhccCCeEEEEECCHHHHHHHHHHHHhhCCCceEEEEEEcccchhhhhcccccCCeE--
Confidence 446899999 555 68899999964 4444421 23466789999864 332 1 111
Q ss_pred cccchhhhHHhhhhhhhhcCCCccchhhhhhcccccceeeeeeccCChHHHHHHHHHHHHHhccCC
Q 036440 80 RLGYSHIKIMIAFFIRLVVGRGRLHIFSWLNFMKRVINMQIIIHVFGDEESVKILKICREAITSKA 145 (181)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~iLHdw~D~~~~~iL~~~~~a~~~~g 145 (181)
++++...+|+++++++.++|++++++|+|||
T Consensus 141 -----------------------------------~~~~gs~~~~~~~~e~~~~L~~i~~~L~pgG 171 (301)
T TIGR03438 141 -----------------------------------GFFPGSTIGNFTPEEAVAFLRRIRQLLGPGG 171 (301)
T ss_pred -----------------------------------EEEecccccCCCHHHHHHHHHHHHHhcCCCC
Confidence 2277788999999999999999999999999
|
This model represents a distinct set of uncharacterized proteins found in the bacteria. Analysis by PSI-BLAST shows remote sequence homology to methyltransferases |
| >PLN02244 tocopherol O-methyltransferase | Back alignment and domain information |
|---|
Probab=98.02 E-value=0.0001 Score=65.49 Aligned_cols=51 Identities=14% Similarity=0.229 Sum_probs=35.6
Q ss_pred cCCCeEEEec------------CCCCceEEEeech-hhhhhhc-------cCCCceEEecCCCC-CCCC--cceE
Q 036440 26 ERLGSLVDVG------------AFPCVKCTEFDQP-HVVANLL-------DTNNLKYLADDFFQ-SIPP--VCMI 77 (181)
Q Consensus 26 ~~~~~lvDvG------------~~P~l~~~~~DlP-~Vv~~a~-------~~~ri~~~~gDff~-~~P~--~d~~ 77 (181)
+.-.+||||| ++ +.+.+.+|+- ..++.+. ..++++++.+|+.+ ++|. .|++
T Consensus 117 ~~~~~VLDiGCG~G~~~~~La~~~-g~~v~gvD~s~~~i~~a~~~~~~~g~~~~v~~~~~D~~~~~~~~~~FD~V 190 (340)
T PLN02244 117 KRPKRIVDVGCGIGGSSRYLARKY-GANVKGITLSPVQAARANALAAAQGLSDKVSFQVADALNQPFEDGQFDLV 190 (340)
T ss_pred CCCCeEEEecCCCCHHHHHHHHhc-CCEEEEEECCHHHHHHHHHHHHhcCCCCceEEEEcCcccCCCCCCCccEE
Confidence 3457899999 35 6788999984 4444332 24689999999876 3443 5777
|
|
| >PRK08317 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=97.99 E-value=0.00013 Score=58.49 Aligned_cols=109 Identities=14% Similarity=0.202 Sum_probs=71.7
Q ss_pred HHHHhhhhhcCCCeEEEec------------CC-CCceEEEeech-hhhhhhc-----cCCCceEEecCCCC-CCCC--c
Q 036440 17 ALKYCKQIFERLGSLVDVG------------AF-PCVKCTEFDQP-HVVANLL-----DTNNLKYLADDFFQ-SIPP--V 74 (181)
Q Consensus 17 ~l~~~~~d~~~~~~lvDvG------------~~-P~l~~~~~DlP-~Vv~~a~-----~~~ri~~~~gDff~-~~P~--~ 74 (181)
+++.. ++..-.+|||+| .+ |..+.+.+|+- ..++.+. ..+++++..+|+.+ +++. .
T Consensus 11 ~~~~~--~~~~~~~vLdiG~G~G~~~~~~a~~~~~~~~v~~~d~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~ 88 (241)
T PRK08317 11 TFELL--AVQPGDRVLDVGCGPGNDARELARRVGPEGRVVGIDRSEAMLALAKERAAGLGPNVEFVRGDADGLPFPDGSF 88 (241)
T ss_pred HHHHc--CCCCCCEEEEeCCCCCHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHhhCCCCceEEEecccccCCCCCCCc
Confidence 44555 466667999999 44 78899999984 4444332 25689999999875 3433 5
Q ss_pred ceEeccccchhhhHHhhhhhhhhcCCCccchhhhhhcccccceeeeeeccCChHHHHHHHHHHHHHhccCC---------
Q 036440 75 CMIPLRLGYSHIKIMIAFFIRLVVGRGRLHIFSWLNFMKRVINMQIIIHVFGDEESVKILKICREAITSKA--------- 145 (181)
Q Consensus 75 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~iLHdw~D~~~~~iL~~~~~a~~~~g--------- 145 (181)
|.+ ++..++|.+.|. ..+|++++..++|||
T Consensus 89 D~v---------------------------------------~~~~~~~~~~~~--~~~l~~~~~~L~~gG~l~~~~~~~ 127 (241)
T PRK08317 89 DAV---------------------------------------RSDRVLQHLEDP--ARALAEIARVLRPGGRVVVLDTDW 127 (241)
T ss_pred eEE---------------------------------------EEechhhccCCH--HHHHHHHHHHhcCCcEEEEEecCC
Confidence 877 455555555443 234555555555555
Q ss_pred -------------------------ccCCHHHHHHHHHhCCCeEEEEE
Q 036440 146 -------------------------KLSTEKELESLFVEVHFHHYKIT 168 (181)
Q Consensus 146 -------------------------~eRt~~E~~~Ll~~aGf~~~~i~ 168 (181)
...+..++.++|+++||.++++.
T Consensus 128 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~~~~~ 175 (241)
T PRK08317 128 DTLVWHSGDRALMRKILNFWSDHFADPWLGRRLPGLFREAGLTDIEVE 175 (241)
T ss_pred CceeecCCChHHHHHHHHHHHhcCCCCcHHHHHHHHHHHcCCCceeEE
Confidence 22345689999999999987664
|
|
| >PF05891 Methyltransf_PK: AdoMet dependent proline di-methyltransferase; InterPro: IPR008576 This family consists of several eukaryotic proteins of unknown function that are S-adenosyl-L-methionine-dependent methyltransferase-like | Back alignment and domain information |
|---|
Probab=97.94 E-value=2.4e-05 Score=67.00 Aligned_cols=58 Identities=22% Similarity=0.376 Sum_probs=49.2
Q ss_pred eeeeeeccCChHHHHHHHHHHHHHhccCC----------------------ccCCHHHHHHHHHhCCCeEEEEEEcCCCC
Q 036440 117 NMQIIIHVFGDEESVKILKICREAITSKA----------------------KLSTEKELESLFVEVHFHHYKITPLFGLP 174 (181)
Q Consensus 117 ~l~~iLHdw~D~~~~~iL~~~~~a~~~~g----------------------~eRt~~E~~~Ll~~aGf~~~~i~~~~~~~ 174 (181)
++++++-..+|++.++.|++|.++++|+| -+||.+.|++||++||+++++...-.+.|
T Consensus 127 W~QW~lghLTD~dlv~fL~RCk~~L~~~G~IvvKEN~~~~~~~~~D~~DsSvTRs~~~~~~lF~~AGl~~v~~~~Q~~fP 206 (218)
T PF05891_consen 127 WIQWCLGHLTDEDLVAFLKRCKQALKPNGVIVVKENVSSSGFDEFDEEDSSVTRSDEHFRELFKQAGLRLVKEEKQKGFP 206 (218)
T ss_dssp EEES-GGGS-HHHHHHHHHHHHHHEEEEEEEEEEEEEESSSEEEEETTTTEEEEEHHHHHHHHHHCT-EEEEEEE-TT--
T ss_pred EehHhhccCCHHHHHHHHHHHHHhCcCCcEEEEEecCCCCCCcccCCccCeeecCHHHHHHHHHHcCCEEEEeccccCCC
Confidence 99999999999999999999999999999 78999999999999999999877655543
|
; GO: 0008168 methyltransferase activity; PDB: 1XTP_A 2EX4_B. |
| >PRK11207 tellurite resistance protein TehB; Provisional | Back alignment and domain information |
|---|
Probab=97.92 E-value=0.00017 Score=58.96 Aligned_cols=110 Identities=18% Similarity=0.198 Sum_probs=83.5
Q ss_pred HHHHHHhhhhhcCCCeEEEec----------CCCCceEEEeec-hhhhhhhcc------CCCceEEecCCCCC-CCC-cc
Q 036440 15 SLALKYCKQIFERLGSLVDVG----------AFPCVKCTEFDQ-PHVVANLLD------TNNLKYLADDFFQS-IPP-VC 75 (181)
Q Consensus 15 ~~~l~~~~~d~~~~~~lvDvG----------~~P~l~~~~~Dl-P~Vv~~a~~------~~ri~~~~gDff~~-~P~-~d 75 (181)
+.+++.+ ....-.++||+| +-.+.+++.+|+ |..++.+.. ..++++...|+.+. ++. .|
T Consensus 20 ~~l~~~l--~~~~~~~vLDiGcG~G~~a~~La~~g~~V~gvD~S~~~i~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~fD 97 (197)
T PRK11207 20 SEVLEAV--KVVKPGKTLDLGCGNGRNSLYLAANGFDVTAWDKNPMSIANLERIKAAENLDNLHTAVVDLNNLTFDGEYD 97 (197)
T ss_pred HHHHHhc--ccCCCCcEEEECCCCCHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHcCCCcceEEecChhhCCcCCCcC
Confidence 6777777 455558999999 333568899999 555554431 24588888998753 333 68
Q ss_pred eEeccccchhhhHHhhhhhhhhcCCCccchhhhhhcccccceeeeeeccCChHHHHHHHHHHHHHhccCCc---------
Q 036440 76 MIPLRLGYSHIKIMIAFFIRLVVGRGRLHIFSWLNFMKRVINMQIIIHVFGDEESVKILKICREAITSKAK--------- 146 (181)
Q Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~iLHdw~D~~~~~iL~~~~~a~~~~g~--------- 146 (181)
++ +...++|.+++++..+++++++++++|||+
T Consensus 98 ~I---------------------------------------~~~~~~~~~~~~~~~~~l~~i~~~LkpgG~~~~~~~~~~ 138 (197)
T PRK11207 98 FI---------------------------------------LSTVVLMFLEAKTIPGLIANMQRCTKPGGYNLIVAAMDT 138 (197)
T ss_pred EE---------------------------------------EEecchhhCCHHHHHHHHHHHHHHcCCCcEEEEEEEecC
Confidence 88 777888988999999999999999999992
Q ss_pred -----------cCCHHHHHHHHHhCCCeEEEE
Q 036440 147 -----------LSTEKELESLFVEVHFHHYKI 167 (181)
Q Consensus 147 -----------eRt~~E~~~Ll~~aGf~~~~i 167 (181)
..+.+|+.++++ ||+.+..
T Consensus 139 ~~~~~~~~~~~~~~~~el~~~~~--~~~~~~~ 168 (197)
T PRK11207 139 ADYPCTVGFPFAFKEGELRRYYE--GWEMVKY 168 (197)
T ss_pred CCCCCCCCCCCccCHHHHHHHhC--CCeEEEe
Confidence 236788999887 9988776
|
|
| >PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A | Back alignment and domain information |
|---|
Probab=97.91 E-value=4.1e-05 Score=55.42 Aligned_cols=79 Identities=18% Similarity=0.392 Sum_probs=61.2
Q ss_pred CeEEEec------------CCCCceEEEeec-hhhhhhhc-------cCCCceEEecCC-CC--CCCCcceEeccccchh
Q 036440 29 GSLVDVG------------AFPCVKCTEFDQ-PHVVANLL-------DTNNLKYLADDF-FQ--SIPPVCMIPLRLGYSH 85 (181)
Q Consensus 29 ~~lvDvG------------~~P~l~~~~~Dl-P~Vv~~a~-------~~~ri~~~~gDf-f~--~~P~~d~~~~~~~~~~ 85 (181)
.+|+|+| .+|+.+.+.+|. |..++.+. ..+||+++.+|+ +. ..+..|++
T Consensus 3 ~~vLDlGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~v-------- 74 (112)
T PF12847_consen 3 GRVLDLGCGTGRLSIALARLFPGARVVGVDISPEMLEIARERAAEEGLSDRITFVQGDAEFDPDFLEPFDLV-------- 74 (112)
T ss_dssp CEEEEETTTTSHHHHHHHHHHTTSEEEEEESSHHHHHHHHHHHHHTTTTTTEEEEESCCHGGTTTSSCEEEE--------
T ss_pred CEEEEEcCcCCHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEECccccCcccCCCCCEE--------
Confidence 5799999 479999999999 77776553 378999999999 32 23347888
Q ss_pred hhHHhhhhhhhhcCCCccchhhhhhcccccceeee-eeccCCh-HHHHHHHHHHHHHhccCCc
Q 036440 86 IKIMIAFFIRLVVGRGRLHIFSWLNFMKRVINMQI-IIHVFGD-EESVKILKICREAITSKAK 146 (181)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-iLHdw~D-~~~~~iL~~~~~a~~~~g~ 146 (181)
++.. .+|.+.+ ++..++|+++++.++|||+
T Consensus 75 -------------------------------~~~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~ 106 (112)
T PF12847_consen 75 -------------------------------ICSGFTLHFLLPLDERRRVLERIRRLLKPGGR 106 (112)
T ss_dssp -------------------------------EECSGSGGGCCHHHHHHHHHHHHHHHEEEEEE
T ss_pred -------------------------------EECCCccccccchhHHHHHHHHHHHhcCCCcE
Confidence 5666 4554333 7888999999999999984
|
... |
| >PRK11036 putative S-adenosyl-L-methionine-dependent methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=97.90 E-value=8.6e-05 Score=62.62 Aligned_cols=103 Identities=12% Similarity=0.123 Sum_probs=69.6
Q ss_pred CCCeEEEec----------CCCCceEEEeec-hhhhhhhcc-------CCCceEEecCCCC--CCCC--cceEeccccch
Q 036440 27 RLGSLVDVG----------AFPCVKCTEFDQ-PHVVANLLD-------TNNLKYLADDFFQ--SIPP--VCMIPLRLGYS 84 (181)
Q Consensus 27 ~~~~lvDvG----------~~P~l~~~~~Dl-P~Vv~~a~~-------~~ri~~~~gDff~--~~P~--~d~~~~~~~~~ 84 (181)
.-.+|+|+| +-.+.+.+.+|+ |..++.+.. .++++++.+|+.+ +.+. .|++
T Consensus 44 ~~~~vLDiGcG~G~~a~~la~~g~~v~~vD~s~~~l~~a~~~~~~~g~~~~v~~~~~d~~~l~~~~~~~fD~V------- 116 (255)
T PRK11036 44 RPLRVLDAGGGEGQTAIKLAELGHQVILCDLSAEMIQRAKQAAEAKGVSDNMQFIHCAAQDIAQHLETPVDLI------- 116 (255)
T ss_pred CCCEEEEeCCCchHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHhcCCccceEEEEcCHHHHhhhcCCCCCEE-------
Confidence 446899999 223567899998 677766542 4689999999864 2332 5888
Q ss_pred hhhHHhhhhhhhhcCCCccchhhhhhcccccceeeeeeccCChHHHHHHHHHHHHHhccCC-------------------
Q 036440 85 HIKIMIAFFIRLVVGRGRLHIFSWLNFMKRVINMQIIIHVFGDEESVKILKICREAITSKA------------------- 145 (181)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~iLHdw~D~~~~~iL~~~~~a~~~~g------------------- 145 (181)
++..+||...|.. ++|+++...++|||
T Consensus 117 --------------------------------~~~~vl~~~~~~~--~~l~~~~~~LkpgG~l~i~~~n~~~~~~~~~~~ 162 (255)
T PRK11036 117 --------------------------------LFHAVLEWVADPK--SVLQTLWSVLRPGGALSLMFYNANGLLMHNMVA 162 (255)
T ss_pred --------------------------------EehhHHHhhCCHH--HHHHHHHHHcCCCeEEEEEEECccHHHHHHHHc
Confidence 4555555444332 45555566666655
Q ss_pred ---------------------ccCCHHHHHHHHHhCCCeEEEEEEc
Q 036440 146 ---------------------KLSTEKELESLFVEVHFHHYKITPL 170 (181)
Q Consensus 146 ---------------------~eRt~~E~~~Ll~~aGf~~~~i~~~ 170 (181)
...+.+++.++|+++||+++.+.-+
T Consensus 163 ~~~~~~~~~~~~~~~~~~~p~~~~~~~~l~~~l~~aGf~~~~~~gi 208 (255)
T PRK11036 163 GNFDYVQAGMPKRKKRTLSPDYPLDPEQVYQWLEEAGWQIMGKTGV 208 (255)
T ss_pred cChHHHHhcCccccccCCCCCCCCCHHHHHHHHHHCCCeEeeeeeE
Confidence 1246799999999999999876543
|
|
| >PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=97.89 E-value=0.00018 Score=60.94 Aligned_cols=104 Identities=18% Similarity=0.277 Sum_probs=75.2
Q ss_pred hcCCCeEEEec-------------CCCCceEEEeec-hhhhhhhcc------CCCceEEecCCCC-CCCC--cceEeccc
Q 036440 25 FERLGSLVDVG-------------AFPCVKCTEFDQ-PHVVANLLD------TNNLKYLADDFFQ-SIPP--VCMIPLRL 81 (181)
Q Consensus 25 ~~~~~~lvDvG-------------~~P~l~~~~~Dl-P~Vv~~a~~------~~ri~~~~gDff~-~~P~--~d~~~~~~ 81 (181)
...-.+|||+| ..|..+.+.+|. |..++.++. .+++++..+|+.+ ++|. .|++
T Consensus 75 ~~~g~~VLDiG~G~G~~~~~~a~~~g~~~~v~gvD~s~~~l~~A~~~~~~~g~~~v~~~~~d~~~l~~~~~~fD~V---- 150 (272)
T PRK11873 75 LKPGETVLDLGSGGGFDCFLAARRVGPTGKVIGVDMTPEMLAKARANARKAGYTNVEFRLGEIEALPVADNSVDVI---- 150 (272)
T ss_pred CCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEECCCHHHHHHHHHHHHHcCCCCEEEEEcchhhCCCCCCceeEE----
Confidence 33446999999 246668899998 666666542 3588999999865 3443 4777
Q ss_pred cchhhhHHhhhhhhhhcCCCccchhhhhhcccccceeeeeeccCChHHHHHHHHHHHHHhccCC----------------
Q 036440 82 GYSHIKIMIAFFIRLVVGRGRLHIFSWLNFMKRVINMQIIIHVFGDEESVKILKICREAITSKA---------------- 145 (181)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~iLHdw~D~~~~~iL~~~~~a~~~~g---------------- 145 (181)
+...++|.++|. .++|+.+...++|||
T Consensus 151 -----------------------------------i~~~v~~~~~d~--~~~l~~~~r~LkpGG~l~i~~~~~~~~~~~~ 193 (272)
T PRK11873 151 -----------------------------------ISNCVINLSPDK--ERVFKEAFRVLKPGGRFAISDVVLRGELPEE 193 (272)
T ss_pred -----------------------------------EEcCcccCCCCH--HHHHHHHHHHcCCCcEEEEEEeeccCCCCHH
Confidence 556666666554 357788888888887
Q ss_pred -------------ccCCHHHHHHHHHhCCCeEEEEEE
Q 036440 146 -------------KLSTEKELESLFVEVHFHHYKITP 169 (181)
Q Consensus 146 -------------~eRt~~E~~~Ll~~aGf~~~~i~~ 169 (181)
...+.+|+.++|+++||..+++..
T Consensus 194 ~~~~~~~~~~~~~~~~~~~e~~~~l~~aGf~~v~i~~ 230 (272)
T PRK11873 194 IRNDAELYAGCVAGALQEEEYLAMLAEAGFVDITIQP 230 (272)
T ss_pred HHHhHHHHhccccCCCCHHHHHHHHHHCCCCceEEEe
Confidence 235788999999999999987753
|
|
| >TIGR00537 hemK_rel_arch HemK-related putative methylase | Back alignment and domain information |
|---|
Probab=97.84 E-value=0.00086 Score=53.48 Aligned_cols=131 Identities=16% Similarity=0.136 Sum_probs=81.1
Q ss_pred CCCeEEEec------------CCCCceEEEeec-hhhhhhhcc-----CCCceEEecCCCCCCCC-cceEeccccchhhh
Q 036440 27 RLGSLVDVG------------AFPCVKCTEFDQ-PHVVANLLD-----TNNLKYLADDFFQSIPP-VCMIPLRLGYSHIK 87 (181)
Q Consensus 27 ~~~~lvDvG------------~~P~l~~~~~Dl-P~Vv~~a~~-----~~ri~~~~gDff~~~P~-~d~~~~~~~~~~~~ 87 (181)
...+++|+| ..+ +.+.+|+ |..++.+.. ..+++++.+|+++..+. .|.+..+.-|.+..
T Consensus 19 ~~~~vLdlG~G~G~~~~~l~~~~~--~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~fD~Vi~n~p~~~~~ 96 (179)
T TIGR00537 19 KPDDVLEIGAGTGLVAIRLKGKGK--CILTTDINPFAVKELRENAKLNNVGLDVVMTDLFKGVRGKFDVILFNPPYLPLE 96 (179)
T ss_pred CCCeEEEeCCChhHHHHHHHhcCC--EEEEEECCHHHHHHHHHHHHHcCCceEEEEcccccccCCcccEEEECCCCCCCc
Confidence 346899999 444 7888897 666655432 34688899999875443 68884443321110
Q ss_pred HHhhhhhhhhcCCCccchhhhhhcccccceeeeeeccC--ChHHHHHHHHHHHHHhccCC-------ccCCHHHHHHHHH
Q 036440 88 IMIAFFIRLVVGRGRLHIFSWLNFMKRVINMQIIIHVF--GDEESVKILKICREAITSKA-------KLSTEKELESLFV 158 (181)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~iLHdw--~D~~~~~iL~~~~~a~~~~g-------~eRt~~E~~~Ll~ 158 (181)
.. ... -+|. ...+|.= +-+-..++|+.+...++|+| ..+...++..+|+
T Consensus 97 ~~----------~~~---~~~~---------~~~~~~~~~~~~~~~~~l~~~~~~Lk~gG~~~~~~~~~~~~~~~~~~l~ 154 (179)
T TIGR00537 97 DD----------LRR---GDWL---------DVAIDGGKDGRKVIDRFLDELPEILKEGGRVQLIQSSLNGEPDTFDKLD 154 (179)
T ss_pred ch----------hcc---cchh---------hhhhhcCCchHHHHHHHHHhHHHhhCCCCEEEEEEeccCChHHHHHHHH
Confidence 00 000 0000 0111110 11124578999999999999 4445889999999
Q ss_pred hCCCeEEEEEEcCCCCeEEEEEC
Q 036440 159 EVHFHHYKITPLFGLPSLIEVYP 181 (181)
Q Consensus 159 ~aGf~~~~i~~~~~~~~viE~~~ 181 (181)
++||....+..-.-+.--+++|+
T Consensus 155 ~~gf~~~~~~~~~~~~~~~~~~~ 177 (179)
T TIGR00537 155 ERGFRYEIVAERGLFFEELFAIK 177 (179)
T ss_pred hCCCeEEEEEEeecCceEEEEEE
Confidence 99999888877666666666653
|
The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. This model represents an archaeal and eukaryotic protein family that lacks an N-terminal domain found in HemK and its eubacterial homologs. It is found in a single copy in the first six completed archaeal and eukaryotic genomes. |
| >PRK07580 Mg-protoporphyrin IX methyl transferase; Validated | Back alignment and domain information |
|---|
Probab=97.83 E-value=0.00031 Score=57.19 Aligned_cols=107 Identities=14% Similarity=0.171 Sum_probs=69.6
Q ss_pred cCCCeEEEec----------CCCCceEEEeec-hhhhhhhcc-------CCCceEEecCCCCCCC-CcceEeccccchhh
Q 036440 26 ERLGSLVDVG----------AFPCVKCTEFDQ-PHVVANLLD-------TNNLKYLADDFFQSIP-PVCMIPLRLGYSHI 86 (181)
Q Consensus 26 ~~~~~lvDvG----------~~P~l~~~~~Dl-P~Vv~~a~~-------~~ri~~~~gDff~~~P-~~d~~~~~~~~~~~ 86 (181)
..-.+||||| +--+.+.+..|+ |..++.+.. .+++++..+| ++..+ ..|++
T Consensus 62 ~~~~~vLDvGcG~G~~~~~l~~~~~~v~~~D~s~~~i~~a~~~~~~~~~~~~i~~~~~d-~~~~~~~fD~v--------- 131 (230)
T PRK07580 62 LTGLRILDAGCGVGSLSIPLARRGAKVVASDISPQMVEEARERAPEAGLAGNITFEVGD-LESLLGRFDTV--------- 131 (230)
T ss_pred CCCCEEEEEeCCCCHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHhcCCccCcEEEEcC-chhccCCcCEE---------
Confidence 3456899999 111345889998 555555532 3589999999 44332 36777
Q ss_pred hHHhhhhhhhhcCCCccchhhhhhcccccceeeeeeccCChHHHHHHHHHHHHHhccCC---------------------
Q 036440 87 KIMIAFFIRLVVGRGRLHIFSWLNFMKRVINMQIIIHVFGDEESVKILKICREAITSKA--------------------- 145 (181)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~iLHdw~D~~~~~iL~~~~~a~~~~g--------------------- 145 (181)
+...++|.|+++...++++++....+.++
T Consensus 132 ------------------------------~~~~~l~~~~~~~~~~~l~~l~~~~~~~~~i~~~~~~~~~~~~~~l~~~~ 181 (230)
T PRK07580 132 ------------------------------VCLDVLIHYPQEDAARMLAHLASLTRGSLIFTFAPYTPLLALLHWIGGLF 181 (230)
T ss_pred ------------------------------EEcchhhcCCHHHHHHHHHHHHhhcCCeEEEEECCccHHHHHHHHhcccc
Confidence 45555555666665566655544332211
Q ss_pred ---------ccCCHHHHHHHHHhCCCeEEEEEEcCC
Q 036440 146 ---------KLSTEKELESLFVEVHFHHYKITPLFG 172 (181)
Q Consensus 146 ---------~eRt~~E~~~Ll~~aGf~~~~i~~~~~ 172 (181)
...+.+++..+++++||++.++.+...
T Consensus 182 ~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~~~~~ 217 (230)
T PRK07580 182 PGPSRTTRIYPHREKGIRRALAAAGFKVVRTERISS 217 (230)
T ss_pred CCccCCCCccccCHHHHHHHHHHCCCceEeeeeccc
Confidence 344788999999999999999887653
|
|
| >PRK01683 trans-aconitate 2-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=97.82 E-value=0.0004 Score=58.10 Aligned_cols=61 Identities=21% Similarity=0.341 Sum_probs=45.4
Q ss_pred HHHHHHhhhhhcCCCeEEEec------------CCCCceEEEeec-hhhhhhhcc-CCCceEEecCCCCCCC--CcceE
Q 036440 15 SLALKYCKQIFERLGSLVDVG------------AFPCVKCTEFDQ-PHVVANLLD-TNNLKYLADDFFQSIP--PVCMI 77 (181)
Q Consensus 15 ~~~l~~~~~d~~~~~~lvDvG------------~~P~l~~~~~Dl-P~Vv~~a~~-~~ri~~~~gDff~~~P--~~d~~ 77 (181)
..+++.. ..+...+++|+| .+|+.+.+.+|. |..++.+.. .+++++..+|+.+-.| ..|++
T Consensus 21 ~~ll~~~--~~~~~~~vLDiGcG~G~~~~~la~~~~~~~v~gvD~s~~~i~~a~~~~~~~~~~~~d~~~~~~~~~fD~v 97 (258)
T PRK01683 21 RDLLARV--PLENPRYVVDLGCGPGNSTELLVERWPAARITGIDSSPAMLAEARSRLPDCQFVEADIASWQPPQALDLI 97 (258)
T ss_pred HHHHhhC--CCcCCCEEEEEcccCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHhCCCCeEEECchhccCCCCCccEE
Confidence 5666666 566778999999 778999999999 566666643 4678999999865333 36877
|
|
| >TIGR02021 BchM-ChlM magnesium protoporphyrin O-methyltransferase | Back alignment and domain information |
|---|
Probab=97.82 E-value=0.00028 Score=57.87 Aligned_cols=52 Identities=13% Similarity=0.175 Sum_probs=35.3
Q ss_pred cCCCeEEEec----------CCCCceEEEeec-hhhhhhhcc-------CCCceEEecCCCCCCCCcceE
Q 036440 26 ERLGSLVDVG----------AFPCVKCTEFDQ-PHVVANLLD-------TNNLKYLADDFFQSIPPVCMI 77 (181)
Q Consensus 26 ~~~~~lvDvG----------~~P~l~~~~~Dl-P~Vv~~a~~-------~~ri~~~~gDff~~~P~~d~~ 77 (181)
..-.+++|+| +-.+.+.+.+|. |..++.+.. .+++++..+|+.+.....|++
T Consensus 54 ~~~~~vLDiGcG~G~~~~~la~~~~~v~gvD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~~~fD~i 123 (219)
T TIGR02021 54 LKGKRVLDAGCGTGLLSIELAKRGAIVKAVDISEQMVQMARNRAQGRDVAGNVEFEVNDLLSLCGEFDIV 123 (219)
T ss_pred CCCCEEEEEeCCCCHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCCCceEEEECChhhCCCCcCEE
Confidence 3467899999 223457889997 556655532 258999999987643446776
|
This model represents the S-adenosylmethionine-dependent O-methyltransferase responsible for methylation of magnesium protoporphyrin IX. This step is essentiasl for the biosynthesis of both chlorophyll and bacteriochlorophyll. This model encompasses two closely related clades, from cyanobacteria (and plants) where it is called ChlM and other photosynthetic bacteria where it is known as BchM. |
| >PRK15068 tRNA mo(5)U34 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=97.79 E-value=0.00038 Score=61.69 Aligned_cols=100 Identities=12% Similarity=0.113 Sum_probs=71.2
Q ss_pred CeEEEec------------CCCCceEEEeechhh-hhh--h-----ccCCCceEEecCCCC-CCCC-cceEeccccchhh
Q 036440 29 GSLVDVG------------AFPCVKCTEFDQPHV-VAN--L-----LDTNNLKYLADDFFQ-SIPP-VCMIPLRLGYSHI 86 (181)
Q Consensus 29 ~~lvDvG------------~~P~l~~~~~DlP~V-v~~--a-----~~~~ri~~~~gDff~-~~P~-~d~~~~~~~~~~~ 86 (181)
++|+||| ..|. +++.+|.-.. +.. + ....+|.++.+|+-+ +.+. .|++
T Consensus 124 ~~VLDIGCG~G~~~~~la~~g~~-~V~GiD~S~~~l~q~~a~~~~~~~~~~i~~~~~d~e~lp~~~~FD~V--------- 193 (322)
T PRK15068 124 RTVLDVGCGNGYHMWRMLGAGAK-LVVGIDPSQLFLCQFEAVRKLLGNDQRAHLLPLGIEQLPALKAFDTV--------- 193 (322)
T ss_pred CEEEEeccCCcHHHHHHHHcCCC-EEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEeCCHHHCCCcCCcCEE---------
Confidence 7999999 4444 4899995432 221 1 124589999998864 2223 5887
Q ss_pred hHHhhhhhhhhcCCCccchhhhhhcccccceeeeeeccCChHHHHHHHHHHHHHhccCC---------------------
Q 036440 87 KIMIAFFIRLVVGRGRLHIFSWLNFMKRVINMQIIIHVFGDEESVKILKICREAITSKA--------------------- 145 (181)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~iLHdw~D~~~~~iL~~~~~a~~~~g--------------------- 145 (181)
+...+||...|- ..+|++++..++|||
T Consensus 194 ------------------------------~s~~vl~H~~dp--~~~L~~l~~~LkpGG~lvl~~~~i~~~~~~~l~p~~ 241 (322)
T PRK15068 194 ------------------------------FSMGVLYHRRSP--LDHLKQLKDQLVPGGELVLETLVIDGDENTVLVPGD 241 (322)
T ss_pred ------------------------------EECChhhccCCH--HHHHHHHHHhcCCCcEEEEEEEEecCCCccccCchh
Confidence 566677666554 357899999999988
Q ss_pred ---------ccCCHHHHHHHHHhCCCeEEEEEEc
Q 036440 146 ---------KLSTEKELESLFVEVHFHHYKITPL 170 (181)
Q Consensus 146 ---------~eRt~~E~~~Ll~~aGf~~~~i~~~ 170 (181)
-.+|.+++..+|+++||+++++...
T Consensus 242 ~y~~~~~~~~lps~~~l~~~L~~aGF~~i~~~~~ 275 (322)
T PRK15068 242 RYAKMRNVYFIPSVPALKNWLERAGFKDVRIVDV 275 (322)
T ss_pred HHhcCccceeCCCHHHHHHHHHHcCCceEEEEeC
Confidence 1348899999999999999988754
|
|
| >PRK06202 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=97.79 E-value=0.00043 Score=57.37 Aligned_cols=105 Identities=18% Similarity=0.200 Sum_probs=74.1
Q ss_pred cCCCeEEEec----------------CCCCceEEEeec-hhhhhhhcc---CCCceEEecC--CCCCCC-CcceEecccc
Q 036440 26 ERLGSLVDVG----------------AFPCVKCTEFDQ-PHVVANLLD---TNNLKYLADD--FFQSIP-PVCMIPLRLG 82 (181)
Q Consensus 26 ~~~~~lvDvG----------------~~P~l~~~~~Dl-P~Vv~~a~~---~~ri~~~~gD--ff~~~P-~~d~~~~~~~ 82 (181)
++..+|+|+| ..|..+.+.+|+ |+.++.+.. .+++++...| -+...+ ..|++
T Consensus 59 ~~~~~iLDlGcG~G~~~~~L~~~~~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~l~~~~~~fD~V----- 133 (232)
T PRK06202 59 DRPLTLLDIGCGGGDLAIDLARWARRDGLRLEVTAIDPDPRAVAFARANPRRPGVTFRQAVSDELVAEGERFDVV----- 133 (232)
T ss_pred CCCcEEEEeccCCCHHHHHHHHHHHhCCCCcEEEEEcCCHHHHHHHHhccccCCCeEEEEecccccccCCCccEE-----
Confidence 3456899999 146679999998 677776653 2445554443 332222 26888
Q ss_pred chhhhHHhhhhhhhhcCCCccchhhhhhcccccceeeeeeccCChHHHHHHHHHHHHHhcc-------------------
Q 036440 83 YSHIKIMIAFFIRLVVGRGRLHIFSWLNFMKRVINMQIIIHVFGDEESVKILKICREAITS------------------- 143 (181)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~iLHdw~D~~~~~iL~~~~~a~~~------------------- 143 (181)
+...+||..+|++..++|+.++...+.
T Consensus 134 ----------------------------------~~~~~lhh~~d~~~~~~l~~~~r~~~~~~~i~dl~~~~~~~~~~~~ 179 (232)
T PRK06202 134 ----------------------------------TSNHFLHHLDDAEVVRLLADSAALARRLVLHNDLIRSRLAYALFWA 179 (232)
T ss_pred ----------------------------------EECCeeecCChHHHHHHHHHHHHhcCeeEEEeccccCHHHHHHHHH
Confidence 777888888888777888887665532
Q ss_pred -------C------C-----ccCCHHHHHHHHHhCCCeEEEEEEc
Q 036440 144 -------K------A-----KLSTEKELESLFVEVHFHHYKITPL 170 (181)
Q Consensus 144 -------~------g-----~eRt~~E~~~Ll~~aGf~~~~i~~~ 170 (181)
+ + +-.|.+|+.+++++ ||++..+++.
T Consensus 180 ~~~~~~~~~~~~~d~~~s~~~~~~~~el~~ll~~-Gf~~~~~~~~ 223 (232)
T PRK06202 180 GTRLLSRSSFVHTDGLLSVRRSYTPAELAALAPQ-GWRVERQWPF 223 (232)
T ss_pred HHHHhccCceeeccchHHHHhhcCHHHHHHHhhC-CCeEEeccce
Confidence 0 1 56689999999999 9999888765
|
|
| >PF13847 Methyltransf_31: Methyltransferase domain; PDB: 3T0I_B 3SVZ_B 3SXJ_A 3F4K_A 3GU3_B 2GH1_A 1R8Y_E 1R8X_B 2B3T_A 1T43_A | Back alignment and domain information |
|---|
Probab=97.71 E-value=0.00017 Score=55.84 Aligned_cols=77 Identities=21% Similarity=0.328 Sum_probs=57.3
Q ss_pred CCCeEEEec-------------CCCCceEEEeec-hhhhhhhcc------CCCceEEecCCCCCCC-----CcceEeccc
Q 036440 27 RLGSLVDVG-------------AFPCVKCTEFDQ-PHVVANLLD------TNNLKYLADDFFQSIP-----PVCMIPLRL 81 (181)
Q Consensus 27 ~~~~lvDvG-------------~~P~l~~~~~Dl-P~Vv~~a~~------~~ri~~~~gDff~~~P-----~~d~~~~~~ 81 (181)
+-.+|+|+| .+|..+.+.+|+ |..++.+.. .+++++..+|+++ +| ..|++
T Consensus 3 ~~~~iLDlGcG~G~~~~~l~~~~~~~~~i~gvD~s~~~i~~a~~~~~~~~~~ni~~~~~d~~~-l~~~~~~~~D~I---- 77 (152)
T PF13847_consen 3 SNKKILDLGCGTGRLLIQLAKELNPGAKIIGVDISEEMIEYAKKRAKELGLDNIEFIQGDIED-LPQELEEKFDII---- 77 (152)
T ss_dssp TTSEEEEET-TTSHHHHHHHHHSTTTSEEEEEESSHHHHHHHHHHHHHTTSTTEEEEESBTTC-GCGCSSTTEEEE----
T ss_pred CCCEEEEecCcCcHHHHHHHHhcCCCCEEEEEECcHHHHHHhhcccccccccccceEEeehhc-cccccCCCeeEE----
Confidence 446899999 488999999998 566665542 4589999999998 54 37888
Q ss_pred cchhhhHHhhhhhhhhcCCCccchhhhhhcccccceeeeeeccCChHHHHHHHHHHHHHhccCC
Q 036440 82 GYSHIKIMIAFFIRLVVGRGRLHIFSWLNFMKRVINMQIIIHVFGDEESVKILKICREAITSKA 145 (181)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~iLHdw~D~~~~~iL~~~~~a~~~~g 145 (181)
+...++|.+.+.. .+|++++..++++|
T Consensus 78 -----------------------------------~~~~~l~~~~~~~--~~l~~~~~~lk~~G 104 (152)
T PF13847_consen 78 -----------------------------------ISNGVLHHFPDPE--KVLKNIIRLLKPGG 104 (152)
T ss_dssp -----------------------------------EEESTGGGTSHHH--HHHHHHHHHEEEEE
T ss_pred -----------------------------------EEcCchhhccCHH--HHHHHHHHHcCCCc
Confidence 5666666666654 46777777777776
|
... |
| >TIGR03534 RF_mod_PrmC protein-(glutamine-N5) methyltransferase, release factor-specific | Back alignment and domain information |
|---|
Probab=97.70 E-value=0.00041 Score=57.06 Aligned_cols=127 Identities=15% Similarity=0.172 Sum_probs=77.8
Q ss_pred CCeEEEec------------CCCCceEEEeec-hhhhhhhcc------CCCceEEecCCCCCCCC--cceEeccccchhh
Q 036440 28 LGSLVDVG------------AFPCVKCTEFDQ-PHVVANLLD------TNNLKYLADDFFQSIPP--VCMIPLRLGYSHI 86 (181)
Q Consensus 28 ~~~lvDvG------------~~P~l~~~~~Dl-P~Vv~~a~~------~~ri~~~~gDff~~~P~--~d~~~~~~~~~~~ 86 (181)
..+++|+| .+|+.+.+.+|. |..++.+.. .++++++.+|+++.+|. .|.+..+.-|...
T Consensus 88 ~~~ilDig~G~G~~~~~l~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~fD~Vi~npPy~~~ 167 (251)
T TIGR03534 88 PLRVLDLGTGSGAIALALAKERPDARVTAVDISPEALAVARKNAARLGLDNVTFLQSDWFEPLPGGKFDLIVSNPPYIPE 167 (251)
T ss_pred CCeEEEEeCcHhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCeEEEEECchhccCcCCceeEEEECCCCCch
Confidence 35899999 679999999997 666655532 34799999999987654 5877444333111
Q ss_pred hHHhhhhhhhhcCCCccchhhhhhcccccceeeeeecc--CChHHHHHHHHHHHHHhccCC------ccCCHHHHHHHHH
Q 036440 87 KIMIAFFIRLVVGRGRLHIFSWLNFMKRVINMQIIIHV--FGDEESVKILKICREAITSKA------KLSTEKELESLFV 158 (181)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~iLHd--w~D~~~~~iL~~~~~a~~~~g------~eRt~~E~~~Ll~ 158 (181)
...-.. .-....+-. ...+.. -.-+....+++++...++||| .....++++++|+
T Consensus 168 ~~~~~~------------~~~~~~~e~-----~~~~~~~~~~~~~~~~~i~~~~~~L~~gG~~~~~~~~~~~~~~~~~l~ 230 (251)
T TIGR03534 168 ADIHLL------------DPEVRFHEP-----RLALFGGEDGLDFYRRIIAQAPRLLKPGGWLLLEIGYDQGEAVRALFE 230 (251)
T ss_pred hhhhhc------------ChhhhhcCC-----HHHHcCCCcHHHHHHHHHHHHHHhcccCCEEEEEECccHHHHHHHHHH
Confidence 000000 000000000 000000 011223478999999999999 4456788999999
Q ss_pred hCCCeEEEEEEcC
Q 036440 159 EVHFHHYKITPLF 171 (181)
Q Consensus 159 ~aGf~~~~i~~~~ 171 (181)
++||+.+++....
T Consensus 231 ~~gf~~v~~~~d~ 243 (251)
T TIGR03534 231 AAGFADVETRKDL 243 (251)
T ss_pred hCCCCceEEEeCC
Confidence 9999998887543
|
Members of this protein family are HemK (PrmC), a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. SIMBAL analysis (manuscript in prep.) shows the motif [LIV]PRx[DE]TE (in Escherichia coli, IPRPDTE) confers specificity for the release factors rather than for ribosomal protein L3. |
| >PF13489 Methyltransf_23: Methyltransferase domain; PDB: 3JWJ_A 3JWH_B 2AOV_B 2AOT_A 1JQD_B 2AOX_A 1JQE_A 2AOU_B 2AOW_A 3DLI_C | Back alignment and domain information |
|---|
Probab=97.67 E-value=0.00027 Score=53.52 Aligned_cols=48 Identities=15% Similarity=0.191 Sum_probs=41.0
Q ss_pred eeeeeeccCChHHHHHHHHHHHHHhccCC------------------------------ccCCHHHHHHHHHhCCCeEEE
Q 036440 117 NMQIIIHVFGDEESVKILKICREAITSKA------------------------------KLSTEKELESLFVEVHFHHYK 166 (181)
Q Consensus 117 ~l~~iLHdw~D~~~~~iL~~~~~a~~~~g------------------------------~eRt~~E~~~Ll~~aGf~~~~ 166 (181)
+...+||..+| ..++|+.+++.++|+| ...|.++|+.+++++||++++
T Consensus 83 ~~~~~l~~~~d--~~~~l~~l~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~G~~iv~ 160 (161)
T PF13489_consen 83 ICNDVLEHLPD--PEEFLKELSRLLKPGGYLVISDPNRDDPSPRSFLKWRYDRPYGGHVHFFSPDELRQLLEQAGFEIVE 160 (161)
T ss_dssp EEESSGGGSSH--HHHHHHHHHHCEEEEEEEEEEEEBTTSHHHHHHHHCCGTCHHTTTTEEBBHHHHHHHHHHTTEEEEE
T ss_pred hhHHHHhhccc--HHHHHHHHHHhcCCCCEEEEEEcCCcchhhhHHHhcCCcCccCceeccCCHHHHHHHHHHCCCEEEE
Confidence 77888888885 5678888888888888 567899999999999999875
|
... |
| >PLN02396 hexaprenyldihydroxybenzoate methyltransferase | Back alignment and domain information |
|---|
Probab=97.64 E-value=0.00027 Score=63.14 Aligned_cols=99 Identities=14% Similarity=0.125 Sum_probs=72.4
Q ss_pred CeEEEec----------CCCCceEEEeec-hhhhhhhcc-------CCCceEEecCCCCCCC----CcceEeccccchhh
Q 036440 29 GSLVDVG----------AFPCVKCTEFDQ-PHVVANLLD-------TNNLKYLADDFFQSIP----PVCMIPLRLGYSHI 86 (181)
Q Consensus 29 ~~lvDvG----------~~P~l~~~~~Dl-P~Vv~~a~~-------~~ri~~~~gDff~~~P----~~d~~~~~~~~~~~ 86 (181)
.++|||| +.++.+.+.+|. |..++.+.. ..+|+++.+|+-+ +| ..|++
T Consensus 133 ~~ILDIGCG~G~~s~~La~~g~~V~GID~s~~~i~~Ar~~~~~~~~~~~i~~~~~dae~-l~~~~~~FD~V--------- 202 (322)
T PLN02396 133 LKFIDIGCGGGLLSEPLARMGATVTGVDAVDKNVKIARLHADMDPVTSTIEYLCTTAEK-LADEGRKFDAV--------- 202 (322)
T ss_pred CEEEEeeCCCCHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhcCcccceeEEecCHHH-hhhccCCCCEE---------
Confidence 4899999 556778999998 455555431 2489999998743 33 25877
Q ss_pred hHHhhhhhhhhcCCCccchhhhhhcccccceeeeeeccCChHHHHHHHHHHHHHhccCC---------------------
Q 036440 87 KIMIAFFIRLVVGRGRLHIFSWLNFMKRVINMQIIIHVFGDEESVKILKICREAITSKA--------------------- 145 (181)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~iLHdw~D~~~~~iL~~~~~a~~~~g--------------------- 145 (181)
+...+||.+.|.+ ..|+.++..++|||
T Consensus 203 ------------------------------i~~~vLeHv~d~~--~~L~~l~r~LkPGG~liist~nr~~~~~~~~i~~~ 250 (322)
T PLN02396 203 ------------------------------LSLEVIEHVANPA--EFCKSLSALTIPNGATVLSTINRTMRAYASTIVGA 250 (322)
T ss_pred ------------------------------EEhhHHHhcCCHH--HHHHHHHHHcCCCcEEEEEECCcCHHHHHHhhhhH
Confidence 6666777776654 47777777777777
Q ss_pred ---------------ccCCHHHHHHHHHhCCCeEEEEEE
Q 036440 146 ---------------KLSTEKELESLFVEVHFHHYKITP 169 (181)
Q Consensus 146 ---------------~eRt~~E~~~Ll~~aGf~~~~i~~ 169 (181)
+-.|.+|+..+|+++||+++.+..
T Consensus 251 eyi~~~lp~gth~~~~f~tp~eL~~lL~~aGf~i~~~~G 289 (322)
T PLN02396 251 EYILRWLPKGTHQWSSFVTPEELSMILQRASVDVKEMAG 289 (322)
T ss_pred HHHHhcCCCCCcCccCCCCHHHHHHHHHHcCCeEEEEee
Confidence 246899999999999999988753
|
|
| >PF12147 Methyltransf_20: Putative methyltransferase; InterPro: IPR022744 This C-terminal region is found in bacteria and eukaryotes and is approximately 110 amino acids in length | Back alignment and domain information |
|---|
Probab=97.58 E-value=0.00091 Score=60.02 Aligned_cols=114 Identities=15% Similarity=0.156 Sum_probs=84.2
Q ss_pred CCCeEEEec------------CCCC--ceEEEeech-hhhhhh-------ccCCCceEEecCCCCC------CCCcceEe
Q 036440 27 RLGSLVDVG------------AFPC--VKCTEFDQP-HVVANL-------LDTNNLKYLADDFFQS------IPPVCMIP 78 (181)
Q Consensus 27 ~~~~lvDvG------------~~P~--l~~~~~DlP-~Vv~~a-------~~~~ri~~~~gDff~~------~P~~d~~~ 78 (181)
+.-+||||. .+|. .+..+-|.- .-|+.. .+.+-+++..+|.|+. .|..++.
T Consensus 135 ~pvrIlDIAaG~GRYvlDal~~~~~~~~~i~LrDys~~Nv~~g~~li~~~gL~~i~~f~~~dAfd~~~l~~l~p~P~l~- 213 (311)
T PF12147_consen 135 RPVRILDIAAGHGRYVLDALEKHPERPDSILLRDYSPINVEKGRALIAERGLEDIARFEQGDAFDRDSLAALDPAPTLA- 213 (311)
T ss_pred CceEEEEeccCCcHHHHHHHHhCCCCCceEEEEeCCHHHHHHHHHHHHHcCCccceEEEecCCCCHhHhhccCCCCCEE-
Confidence 556899998 7887 678888874 333332 2356669999999963 2444565
Q ss_pred ccccchhhhHHhhhhhhhhcCCCccchhhhhhcccccceeeeeeccCChHHHHH-HHHHHHHHhccCC------------
Q 036440 79 LRLGYSHIKIMIAFFIRLVVGRGRLHIFSWLNFMKRVINMQIIIHVFGDEESVK-ILKICREAITSKA------------ 145 (181)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~iLHdw~D~~~~~-iL~~~~~a~~~~g------------ 145 (181)
+++-+.--|+|.+.++ -|+.++.++.|+|
T Consensus 214 --------------------------------------iVsGL~ElF~Dn~lv~~sl~gl~~al~pgG~lIyTgQPwHPQ 255 (311)
T PF12147_consen 214 --------------------------------------IVSGLYELFPDNDLVRRSLAGLARALEPGGYLIYTGQPWHPQ 255 (311)
T ss_pred --------------------------------------EEecchhhCCcHHHHHHHHHHHHHHhCCCcEEEEcCCCCCcc
Confidence 6777777799988665 6999999999999
Q ss_pred -------------------ccCCHHHHHHHHHhCCCeEEEEE-EcCCCCeEEEE
Q 036440 146 -------------------KLSTEKELESLFVEVHFHHYKIT-PLFGLPSLIEV 179 (181)
Q Consensus 146 -------------------~eRt~~E~~~Ll~~aGf~~~~i~-~~~~~~~viE~ 179 (181)
|-||.+|..+|.++|||+-.+.. .-.|..+|.-+
T Consensus 256 le~IAr~LtsHr~g~~WvMRrRsq~EmD~Lv~~aGF~K~~q~ID~~GIFTVSlA 309 (311)
T PF12147_consen 256 LEMIARVLTSHRDGKAWVMRRRSQAEMDQLVEAAGFEKIDQRIDEWGIFTVSLA 309 (311)
T ss_pred hHHHHHHHhcccCCCceEEEecCHHHHHHHHHHcCCchhhheeccCCceEEEee
Confidence 88999999999999999865433 34455555443
|
It is found in association with PF00561 from PFAM. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins. This domain belongs to the S-adenosyl-L-methionine-dependent methyltransferases superfamily. |
| >PLN02336 phosphoethanolamine N-methyltransferase | Back alignment and domain information |
|---|
Probab=97.50 E-value=0.00063 Score=62.14 Aligned_cols=109 Identities=15% Similarity=0.145 Sum_probs=81.0
Q ss_pred HHHHHHhhhhhcCCCeEEEec-----------CCCCceEEEeec-hhhhhhhc----cCCCceEEecCCCC---CCCC--
Q 036440 15 SLALKYCKQIFERLGSLVDVG-----------AFPCVKCTEFDQ-PHVVANLL----DTNNLKYLADDFFQ---SIPP-- 73 (181)
Q Consensus 15 ~~~l~~~~~d~~~~~~lvDvG-----------~~P~l~~~~~Dl-P~Vv~~a~----~~~ri~~~~gDff~---~~P~-- 73 (181)
..+++.. +...-.+++|+| +. .-+.+.+|. |..++.+. ..++++++.+|+.+ ++|.
T Consensus 27 ~~il~~l--~~~~~~~vLDlGcG~G~~~~~la~~-~~~v~giD~s~~~l~~a~~~~~~~~~i~~~~~d~~~~~~~~~~~~ 103 (475)
T PLN02336 27 PEILSLL--PPYEGKSVLELGAGIGRFTGELAKK-AGQVIALDFIESVIKKNESINGHYKNVKFMCADVTSPDLNISDGS 103 (475)
T ss_pred hHHHhhc--CccCCCEEEEeCCCcCHHHHHHHhh-CCEEEEEeCCHHHHHHHHHHhccCCceEEEEecccccccCCCCCC
Confidence 4455555 334456899999 21 236688886 44454332 24689999999963 2343
Q ss_pred cceEeccccchhhhHHhhhhhhhhcCCCccchhhhhhcccccceeeeeeccCChHHHHHHHHHHHHHhccCC--------
Q 036440 74 VCMIPLRLGYSHIKIMIAFFIRLVVGRGRLHIFSWLNFMKRVINMQIIIHVFGDEESVKILKICREAITSKA-------- 145 (181)
Q Consensus 74 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~iLHdw~D~~~~~iL~~~~~a~~~~g-------- 145 (181)
.|++ +...++|.++|++..++|++++..++|+|
T Consensus 104 fD~I---------------------------------------~~~~~l~~l~~~~~~~~l~~~~r~Lk~gG~l~~~d~~ 144 (475)
T PLN02336 104 VDLI---------------------------------------FSNWLLMYLSDKEVENLAERMVKWLKVGGYIFFRESC 144 (475)
T ss_pred EEEE---------------------------------------ehhhhHHhCCHHHHHHHHHHHHHhcCCCeEEEEEecc
Confidence 5888 78888999999999999999999999999
Q ss_pred --------------ccCCHHHHHHHHHhCCCeEE
Q 036440 146 --------------KLSTEKELESLFVEVHFHHY 165 (181)
Q Consensus 146 --------------~eRt~~E~~~Ll~~aGf~~~ 165 (181)
..|+.++|.+++.++||...
T Consensus 145 ~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~ 178 (475)
T PLN02336 145 FHQSGDSKRKNNPTHYREPRFYTKVFKECHTRDE 178 (475)
T ss_pred CCCCCcccccCCCCeecChHHHHHHHHHheeccC
Confidence 25678999999999998765
|
|
| >PLN02585 magnesium protoporphyrin IX methyltransferase | Back alignment and domain information |
|---|
Probab=97.48 E-value=0.00084 Score=59.80 Aligned_cols=34 Identities=15% Similarity=0.190 Sum_probs=23.9
Q ss_pred CCHHHHHHHHHhCCCeEEEEEEcCCC---CeEEEEEC
Q 036440 148 STEKELESLFVEVHFHHYKITPLFGL---PSLIEVYP 181 (181)
Q Consensus 148 Rt~~E~~~Ll~~aGf~~~~i~~~~~~---~~viE~~~ 181 (181)
.+.+|++++|+++||++....-.... -.+.|+.|
T Consensus 278 ~s~eel~~lL~~AGf~v~~~~~~~~~~y~~~l~~~~~ 314 (315)
T PLN02585 278 HAEADVERALKKAGWKVARREMTATQFYFSRLLEAVP 314 (315)
T ss_pred CCHHHHHHHHHHCCCEEEEEEEeecceeHHhhhhhcc
Confidence 37999999999999998765533332 25556544
|
|
| >COG2226 UbiE Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=97.45 E-value=0.0017 Score=56.13 Aligned_cols=102 Identities=14% Similarity=0.231 Sum_probs=79.9
Q ss_pred CeEEEec------------CCCCceEEEeech-hhhhhhcc------CCCceEEecCCCC-CCCC--cceEeccccchhh
Q 036440 29 GSLVDVG------------AFPCVKCTEFDQP-HVVANLLD------TNNLKYLADDFFQ-SIPP--VCMIPLRLGYSHI 86 (181)
Q Consensus 29 ~~lvDvG------------~~P~l~~~~~DlP-~Vv~~a~~------~~ri~~~~gDff~-~~P~--~d~~~~~~~~~~~ 86 (181)
.++|||| ..+..+++..|.- ..++.+.. ...|+++.+|..+ ++|. -|++
T Consensus 53 ~~vLDva~GTGd~a~~~~k~~g~g~v~~~D~s~~ML~~a~~k~~~~~~~~i~fv~~dAe~LPf~D~sFD~v--------- 123 (238)
T COG2226 53 DKVLDVACGTGDMALLLAKSVGTGEVVGLDISESMLEVAREKLKKKGVQNVEFVVGDAENLPFPDNSFDAV--------- 123 (238)
T ss_pred CEEEEecCCccHHHHHHHHhcCCceEEEEECCHHHHHHHHHHhhccCccceEEEEechhhCCCCCCccCEE---------
Confidence 6899999 7778899999984 56666642 1229999999987 5665 5888
Q ss_pred hHHhhhhhhhhcCCCccchhhhhhcccccceeeeeeccCChHHHHHHHHHHHHHhccCC---------------------
Q 036440 87 KIMIAFFIRLVVGRGRLHIFSWLNFMKRVINMQIIIHVFGDEESVKILKICREAITSKA--------------------- 145 (181)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~iLHdw~D~~~~~iL~~~~~a~~~~g--------------------- 145 (181)
.+..-||+.+|- .+.|+.+...++|||
T Consensus 124 ------------------------------t~~fglrnv~d~--~~aL~E~~RVlKpgG~~~vle~~~p~~~~~~~~~~~ 171 (238)
T COG2226 124 ------------------------------TISFGLRNVTDI--DKALKEMYRVLKPGGRLLVLEFSKPDNPVLRKAYIL 171 (238)
T ss_pred ------------------------------EeeehhhcCCCH--HHHHHHHHHhhcCCeEEEEEEcCCCCchhhHHHHHH
Confidence 777777777754 457888888888888
Q ss_pred -----------------------------ccCCHHHHHHHHHhCCCeEEEEEEcC
Q 036440 146 -----------------------------KLSTEKELESLFVEVHFHHYKITPLF 171 (181)
Q Consensus 146 -----------------------------~eRt~~E~~~Ll~~aGf~~~~i~~~~ 171 (181)
+..+.+++.+.++++||+.+.-.+..
T Consensus 172 ~~~~~v~P~~g~~~~~~~~~y~yL~eSi~~~p~~~~l~~~~~~~gf~~i~~~~~~ 226 (238)
T COG2226 172 YYFKYVLPLIGKLVAKDAEAYEYLAESIRRFPDQEELKQMIEKAGFEEVRYENLT 226 (238)
T ss_pred HHHHhHhhhhceeeecChHHHHHHHHHHHhCCCHHHHHHHHHhcCceEEeeEeee
Confidence 77889999999999999998855543
|
|
| >TIGR00452 methyltransferase, putative | Back alignment and domain information |
|---|
Probab=97.44 E-value=0.0027 Score=56.65 Aligned_cols=99 Identities=12% Similarity=0.126 Sum_probs=69.7
Q ss_pred CeEEEec------------CCCCceEEEeechh-hhhhh-------ccCCCceEEecCCCCCCC---CcceEeccccchh
Q 036440 29 GSLVDVG------------AFPCVKCTEFDQPH-VVANL-------LDTNNLKYLADDFFQSIP---PVCMIPLRLGYSH 85 (181)
Q Consensus 29 ~~lvDvG------------~~P~l~~~~~DlP~-Vv~~a-------~~~~ri~~~~gDff~~~P---~~d~~~~~~~~~~ 85 (181)
++|+||| ..++ +++.+|.-. .+..+ ....++.+..+|+-+ +| ..|++
T Consensus 123 ~~VLDvGCG~G~~~~~~~~~g~~-~v~GiDpS~~ml~q~~~~~~~~~~~~~v~~~~~~ie~-lp~~~~FD~V-------- 192 (314)
T TIGR00452 123 RTILDVGCGSGYHMWRMLGHGAK-SLVGIDPTVLFLCQFEAVRKLLDNDKRAILEPLGIEQ-LHELYAFDTV-------- 192 (314)
T ss_pred CEEEEeccCCcHHHHHHHHcCCC-EEEEEcCCHHHHHHHHHHHHHhccCCCeEEEECCHHH-CCCCCCcCEE--------
Confidence 7999999 3443 678899633 22221 124678888877532 33 35777
Q ss_pred hhHHhhhhhhhhcCCCccchhhhhhcccccceeeeeeccCChHHHHHHHHHHHHHhccCC--------------------
Q 036440 86 IKIMIAFFIRLVVGRGRLHIFSWLNFMKRVINMQIIIHVFGDEESVKILKICREAITSKA-------------------- 145 (181)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~iLHdw~D~~~~~iL~~~~~a~~~~g-------------------- 145 (181)
+...+||.+.|- ...|+.++.+++|||
T Consensus 193 -------------------------------~s~gvL~H~~dp--~~~L~el~r~LkpGG~Lvletl~i~g~~~~~l~p~ 239 (314)
T TIGR00452 193 -------------------------------FSMGVLYHRKSP--LEHLKQLKHQLVIKGELVLETLVIDGDLNTVLVPK 239 (314)
T ss_pred -------------------------------EEcchhhccCCH--HHHHHHHHHhcCCCCEEEEEEEEecCccccccCch
Confidence 666667666554 458899999999999
Q ss_pred ----------ccCCHHHHHHHHHhCCCeEEEEEEc
Q 036440 146 ----------KLSTEKELESLFVEVHFHHYKITPL 170 (181)
Q Consensus 146 ----------~eRt~~E~~~Ll~~aGf~~~~i~~~ 170 (181)
-..|.++++.+|+++||+.+++...
T Consensus 240 ~ry~k~~nv~flpS~~~L~~~L~~aGF~~V~i~~~ 274 (314)
T TIGR00452 240 DRYAKMKNVYFIPSVSALKNWLEKVGFENFRILDV 274 (314)
T ss_pred HHHHhccccccCCCHHHHHHHHHHCCCeEEEEEec
Confidence 1227889999999999999998754
|
Known examples to date are restricted to the proteobacteria. |
| >PRK09328 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=97.32 E-value=0.0085 Score=50.25 Aligned_cols=129 Identities=14% Similarity=0.146 Sum_probs=82.2
Q ss_pred cCCCeEEEec------------CCCCceEEEeech-hhhhhhc------cCCCceEEecCCCCCCC--CcceEeccccch
Q 036440 26 ERLGSLVDVG------------AFPCVKCTEFDQP-HVVANLL------DTNNLKYLADDFFQSIP--PVCMIPLRLGYS 84 (181)
Q Consensus 26 ~~~~~lvDvG------------~~P~l~~~~~DlP-~Vv~~a~------~~~ri~~~~gDff~~~P--~~d~~~~~~~~~ 84 (181)
....+++|+| .+|..+.+..|.- ..++.+. ...+++++.+|+++..+ ..|++..+--|.
T Consensus 107 ~~~~~vLDiG~GsG~~~~~la~~~~~~~v~~iDis~~~l~~a~~n~~~~~~~~i~~~~~d~~~~~~~~~fD~Iv~npPy~ 186 (275)
T PRK09328 107 KEPLRVLDLGTGSGAIALALAKERPDAEVTAVDISPEALAVARRNAKHGLGARVEFLQGDWFEPLPGGRFDLIVSNPPYI 186 (275)
T ss_pred cCCCEEEEEcCcHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhCCCCcEEEEEccccCcCCCCceeEEEECCCcC
Confidence 3456899999 6788999999984 4444433 24689999999998765 368774443321
Q ss_pred hhhHHhhhhhhhhcCCCccchhhhhhcccccceeeeee----------ccCChHHHHHHHHHHHHHhccCC------ccC
Q 036440 85 HIKIMIAFFIRLVVGRGRLHIFSWLNFMKRVINMQIII----------HVFGDEESVKILKICREAITSKA------KLS 148 (181)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~iL----------Hdw~D~~~~~iL~~~~~a~~~~g------~eR 148 (181)
.....-. +...+. ..-.-+.-.++++++...++||| ...
T Consensus 187 ~~~~~~~-------------------------~~~~v~~~ep~~al~~g~~g~~~~~~~~~~~~~~Lk~gG~l~~e~g~~ 241 (275)
T PRK09328 187 PEADIHL-------------------------LQPEVRDHEPHLALFGGEDGLDFYRRIIEQAPRYLKPGGWLLLEIGYD 241 (275)
T ss_pred Ccchhhh-------------------------CCchhhhcCCchhhcCCCCHHHHHHHHHHHHHHhcccCCEEEEEECch
Confidence 1000000 001110 01122334578999999999999 345
Q ss_pred CHHHHHHHHHhCCCeEEEEE-EcCCCCeEEEE
Q 036440 149 TEKELESLFVEVHFHHYKIT-PLFGLPSLIEV 179 (181)
Q Consensus 149 t~~E~~~Ll~~aGf~~~~i~-~~~~~~~viE~ 179 (181)
..++++.++++.||..+++. ...|..-++-+
T Consensus 242 ~~~~~~~~l~~~gf~~v~~~~d~~~~~r~~~~ 273 (275)
T PRK09328 242 QGEAVRALLAAAGFADVETRKDLAGRDRVVLG 273 (275)
T ss_pred HHHHHHHHHHhCCCceeEEecCCCCCceEEEE
Confidence 56789999999999987775 44555555433
|
|
| >PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=97.31 E-value=0.0024 Score=58.37 Aligned_cols=127 Identities=12% Similarity=0.165 Sum_probs=85.2
Q ss_pred HHHHHHhhhhhcCCCeEEEec------------CCCCceEEEeech-hhhhhhcc---------CCCceEEecCCCCCCC
Q 036440 15 SLALKYCKQIFERLGSLVDVG------------AFPCVKCTEFDQP-HVVANLLD---------TNNLKYLADDFFQSIP 72 (181)
Q Consensus 15 ~~~l~~~~~d~~~~~~lvDvG------------~~P~l~~~~~DlP-~Vv~~a~~---------~~ri~~~~gDff~~~P 72 (181)
..+++..+. ...++++|+| ++|..+.+.+|.. ..++.++. .+++++..+|.++.++
T Consensus 218 rllL~~lp~--~~~~~VLDLGCGtGvi~i~la~~~P~~~V~~vD~S~~Av~~A~~N~~~n~~~~~~~v~~~~~D~l~~~~ 295 (378)
T PRK15001 218 RFFMQHLPE--NLEGEIVDLGCGNGVIGLTLLDKNPQAKVVFVDESPMAVASSRLNVETNMPEALDRCEFMINNALSGVE 295 (378)
T ss_pred HHHHHhCCc--ccCCeEEEEeccccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCcccCceEEEEEccccccCC
Confidence 556677742 2236999999 8999999999996 45544431 1378999999998764
Q ss_pred C--cceEeccccchhhhHHhhhhhhhhcCCCccchhhhhhcccccceeeeeeccCChHHHHHHHHHHHHHhccCCccC--
Q 036440 73 P--VCMIPLRLGYSHIKIMIAFFIRLVVGRGRLHIFSWLNFMKRVINMQIIIHVFGDEESVKILKICREAITSKAKLS-- 148 (181)
Q Consensus 73 ~--~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~iLHdw~D~~~~~iL~~~~~a~~~~g~eR-- 148 (181)
. .|++..+--| +..|..+++...++++.++..++|||+.+
T Consensus 296 ~~~fDlIlsNPPf------------------------------------h~~~~~~~~ia~~l~~~a~~~LkpGG~L~iV 339 (378)
T PRK15001 296 PFRFNAVLCNPPF------------------------------------HQQHALTDNVAWEMFHHARRCLKINGELYIV 339 (378)
T ss_pred CCCEEEEEECcCc------------------------------------ccCccCCHHHHHHHHHHHHHhcccCCEEEEE
Confidence 3 6887222211 23345677888899999999999999211
Q ss_pred --CHHHHHHHHHhCCCeEEEEEEcCCCCeEEEEE
Q 036440 149 --TEKELESLFVEVHFHHYKITPLFGLPSLIEVY 180 (181)
Q Consensus 149 --t~~E~~~Ll~~aGf~~~~i~~~~~~~~viE~~ 180 (181)
..-+|...|++ .|..+++.--....-|+++.
T Consensus 340 ~nr~l~y~~~L~~-~fg~~~~va~~~kf~vl~a~ 372 (378)
T PRK15001 340 ANRHLDYFHKLKK-IFGNCTTIATNNKFVVLKAV 372 (378)
T ss_pred EecCcCHHHHHHH-HcCCceEEccCCCEEEEEEE
Confidence 22356666766 46666665555556666664
|
|
| >TIGR02072 BioC biotin biosynthesis protein BioC | Back alignment and domain information |
|---|
Probab=97.27 E-value=0.0052 Score=49.44 Aligned_cols=98 Identities=16% Similarity=0.282 Sum_probs=70.1
Q ss_pred CeEEEec------------CCCCceEEEeech-hhhhhhc--cCCCceEEecCCCCC-CCC--cceEeccccchhhhHHh
Q 036440 29 GSLVDVG------------AFPCVKCTEFDQP-HVVANLL--DTNNLKYLADDFFQS-IPP--VCMIPLRLGYSHIKIMI 90 (181)
Q Consensus 29 ~~lvDvG------------~~P~l~~~~~DlP-~Vv~~a~--~~~ri~~~~gDff~~-~P~--~d~~~~~~~~~~~~~~~ 90 (181)
.+|||+| .+|..+.+..|.. ..+..+. ..++++++.+|+.+. .|. .|++
T Consensus 36 ~~vLDlG~G~G~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v------------- 102 (240)
T TIGR02072 36 ASVLDIGCGTGYLTRALLKRFPQAEFIALDISAGMLAQAKTKLSENVQFICGDAEKLPLEDSSFDLI------------- 102 (240)
T ss_pred CeEEEECCCccHHHHHHHHhCCCCcEEEEeChHHHHHHHHHhcCCCCeEEecchhhCCCCCCceeEE-------------
Confidence 6899999 6788889999985 4444333 245899999998753 333 5888
Q ss_pred hhhhhhhcCCCccchhhhhhcccccceeeeeeccCChHHHHHHHHHHHHHhccCC------------------------c
Q 036440 91 AFFIRLVVGRGRLHIFSWLNFMKRVINMQIIIHVFGDEESVKILKICREAITSKA------------------------K 146 (181)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~iLHdw~D~~~~~iL~~~~~a~~~~g------------------------~ 146 (181)
+...++|...|. .++|++++..++|+| .
T Consensus 103 --------------------------i~~~~l~~~~~~--~~~l~~~~~~L~~~G~l~~~~~~~~~~~~~~~~~~~~~~~ 154 (240)
T TIGR02072 103 --------------------------VSNLALQWCDDL--SQALSELARVLKPGGLLAFSTFGPGTLHELRQSFGQHGLR 154 (240)
T ss_pred --------------------------EEhhhhhhccCH--HHHHHHHHHHcCCCcEEEEEeCCccCHHHHHHHHHHhccC
Confidence 666667655443 457888888888877 2
Q ss_pred cCCHHHHHHHHHhCCCeEEEEE
Q 036440 147 LSTEKELESLFVEVHFHHYKIT 168 (181)
Q Consensus 147 eRt~~E~~~Ll~~aGf~~~~i~ 168 (181)
-.+.+++.+++.++ |..+.+.
T Consensus 155 ~~~~~~~~~~l~~~-f~~~~~~ 175 (240)
T TIGR02072 155 YLSLDELKALLKNS-FELLTLE 175 (240)
T ss_pred CCCHHHHHHHHHHh-cCCcEEE
Confidence 35778899999988 8766543
|
This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology. |
| >PLN02232 ubiquinone biosynthesis methyltransferase | Back alignment and domain information |
|---|
Probab=97.26 E-value=0.0012 Score=52.44 Aligned_cols=27 Identities=30% Similarity=0.271 Sum_probs=22.3
Q ss_pred ccCCHHHHHHHHHhCCCeEEEEEEcCC
Q 036440 146 KLSTEKELESLFVEVHFHHYKITPLFG 172 (181)
Q Consensus 146 ~eRt~~E~~~Ll~~aGf~~~~i~~~~~ 172 (181)
.-.+.+|+.++|+++||+.++......
T Consensus 124 ~f~~~~el~~ll~~aGF~~~~~~~~~~ 150 (160)
T PLN02232 124 GYLTGEELETLALEAGFSSACHYEISG 150 (160)
T ss_pred HCcCHHHHHHHHHHcCCCcceEEECcc
Confidence 345889999999999999998876643
|
|
| >PRK06922 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=97.24 E-value=0.0013 Score=64.41 Aligned_cols=83 Identities=18% Similarity=0.168 Sum_probs=64.7
Q ss_pred hhcCCCeEEEec------------CCCCceEEEeechhh-hhhhcc-----CCCceEEecCCCCC---CCC--cceEecc
Q 036440 24 IFERLGSLVDVG------------AFPCVKCTEFDQPHV-VANLLD-----TNNLKYLADDFFQS---IPP--VCMIPLR 80 (181)
Q Consensus 24 d~~~~~~lvDvG------------~~P~l~~~~~DlP~V-v~~a~~-----~~ri~~~~gDff~~---~P~--~d~~~~~ 80 (181)
++..-.+++|+| ++|+.+.+.+|+... ++.+.. ..++.++.+|..+- +|. .|++
T Consensus 415 d~~~g~rVLDIGCGTG~ls~~LA~~~P~~kVtGIDIS~~MLe~Ararl~~~g~~ie~I~gDa~dLp~~fedeSFDvV--- 491 (677)
T PRK06922 415 DYIKGDTIVDVGAGGGVMLDMIEEETEDKRIYGIDISENVIDTLKKKKQNEGRSWNVIKGDAINLSSSFEKESVDTI--- 491 (677)
T ss_pred hhcCCCEEEEeCCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhcCCCeEEEEcchHhCccccCCCCEEEE---
Confidence 566678999999 689999999999764 555432 34678888998651 332 6888
Q ss_pred ccchhhhHHhhhhhhhhcCCCccchhhhhhcccccceeeeeeccC-----------ChHHHHHHHHHHHHHhccCC
Q 036440 81 LGYSHIKIMIAFFIRLVVGRGRLHIFSWLNFMKRVINMQIIIHVF-----------GDEESVKILKICREAITSKA 145 (181)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~iLHdw-----------~D~~~~~iL~~~~~a~~~~g 145 (181)
+.+.++|+| ++++..++|++++.+++|||
T Consensus 492 ------------------------------------Vsn~vLH~L~syIp~~g~~f~~edl~kiLreI~RVLKPGG 531 (677)
T PRK06922 492 ------------------------------------VYSSILHELFSYIEYEGKKFNHEVIKKGLQSAYEVLKPGG 531 (677)
T ss_pred ------------------------------------EEchHHHhhhhhcccccccccHHHHHHHHHHHHHHcCCCc
Confidence 777788865 56788999999999999999
|
|
| >PRK12335 tellurite resistance protein TehB; Provisional | Back alignment and domain information |
|---|
Probab=97.16 E-value=0.0057 Score=52.79 Aligned_cols=113 Identities=19% Similarity=0.196 Sum_probs=82.2
Q ss_pred HHHHHHhhhhhcCCCeEEEec----------CCCCceEEEeec-hhhhhhhcc-----CCCceEEecCCCCC-CCC-cce
Q 036440 15 SLALKYCKQIFERLGSLVDVG----------AFPCVKCTEFDQ-PHVVANLLD-----TNNLKYLADDFFQS-IPP-VCM 76 (181)
Q Consensus 15 ~~~l~~~~~d~~~~~~lvDvG----------~~P~l~~~~~Dl-P~Vv~~a~~-----~~ri~~~~gDff~~-~P~-~d~ 76 (181)
+.+++.. .....+++||+| +-.+.+.+.+|. |..++.+.. .-++++...|+.+. ++. .|+
T Consensus 110 ~~~~~~~--~~~~~~~vLDlGcG~G~~~~~la~~g~~V~avD~s~~ai~~~~~~~~~~~l~v~~~~~D~~~~~~~~~fD~ 187 (287)
T PRK12335 110 SEVLEAV--QTVKPGKALDLGCGQGRNSLYLALLGFDVTAVDINQQSLENLQEIAEKENLNIRTGLYDINSASIQEEYDF 187 (287)
T ss_pred HHHHHHh--hccCCCCEEEeCCCCCHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHcCCceEEEEechhcccccCCccE
Confidence 3455555 233456999999 335678999999 455554421 23688888887653 333 688
Q ss_pred EeccccchhhhHHhhhhhhhhcCCCccchhhhhhcccccceeeeeeccCChHHHHHHHHHHHHHhccCC-----------
Q 036440 77 IPLRLGYSHIKIMIAFFIRLVVGRGRLHIFSWLNFMKRVINMQIIIHVFGDEESVKILKICREAITSKA----------- 145 (181)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~iLHdw~D~~~~~iL~~~~~a~~~~g----------- 145 (181)
+ +...++|..++++...+|+++.+.++|||
T Consensus 188 I---------------------------------------~~~~vl~~l~~~~~~~~l~~~~~~LkpgG~~l~v~~~~~~ 228 (287)
T PRK12335 188 I---------------------------------------LSTVVLMFLNRERIPAIIKNMQEHTNPGGYNLIVCAMDTE 228 (287)
T ss_pred E---------------------------------------EEcchhhhCCHHHHHHHHHHHHHhcCCCcEEEEEEecccc
Confidence 7 77888998888899999999999999999
Q ss_pred ---------ccCCHHHHHHHHHhCCCeEEEEEEc
Q 036440 146 ---------KLSTEKELESLFVEVHFHHYKITPL 170 (181)
Q Consensus 146 ---------~eRt~~E~~~Ll~~aGf~~~~i~~~ 170 (181)
...+.+|+++++.. |++++....
T Consensus 229 ~~~~~~p~~~~~~~~el~~~~~~--~~i~~~~e~ 260 (287)
T PRK12335 229 DYPCPMPFSFTFKEGELKDYYQD--WEIVKYNEN 260 (287)
T ss_pred cCCCCCCCCcccCHHHHHHHhCC--CEEEEEecc
Confidence 23678899999865 988877533
|
|
| >TIGR00477 tehB tellurite resistance protein TehB | Back alignment and domain information |
|---|
Probab=97.16 E-value=0.0069 Score=49.47 Aligned_cols=111 Identities=15% Similarity=0.167 Sum_probs=79.7
Q ss_pred HHHHHHhhhhhcCCCeEEEec----------CCCCceEEEeec-hhhhhhhcc-----CCCceEEecCCCC-CCCC-cce
Q 036440 15 SLALKYCKQIFERLGSLVDVG----------AFPCVKCTEFDQ-PHVVANLLD-----TNNLKYLADDFFQ-SIPP-VCM 76 (181)
Q Consensus 15 ~~~l~~~~~d~~~~~~lvDvG----------~~P~l~~~~~Dl-P~Vv~~a~~-----~~ri~~~~gDff~-~~P~-~d~ 76 (181)
..+++.. ......+++|+| +-.+.+.+.+|+ |..++.+.. .-+++....|... +++. .|.
T Consensus 20 ~~l~~~~--~~~~~~~vLDiGcG~G~~a~~la~~g~~V~~iD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~~~fD~ 97 (195)
T TIGR00477 20 SAVREAV--KTVAPCKTLDLGCGQGRNSLYLSLAGYDVRAWDHNPASIASVLDMKARENLPLRTDAYDINAAALNEDYDF 97 (195)
T ss_pred HHHHHHh--ccCCCCcEEEeCCCCCHHHHHHHHCCCeEEEEECCHHHHHHHHHHHHHhCCCceeEeccchhccccCCCCE
Confidence 5666766 344457999999 224568899999 455554321 1136677777643 2332 687
Q ss_pred EeccccchhhhHHhhhhhhhhcCCCccchhhhhhcccccceeeeeeccCChHHHHHHHHHHHHHhccCC-----------
Q 036440 77 IPLRLGYSHIKIMIAFFIRLVVGRGRLHIFSWLNFMKRVINMQIIIHVFGDEESVKILKICREAITSKA----------- 145 (181)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~iLHdw~D~~~~~iL~~~~~a~~~~g----------- 145 (181)
+ +...++|.++++....++++++++++|||
T Consensus 98 I---------------------------------------~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lli~~~~~~~ 138 (195)
T TIGR00477 98 I---------------------------------------FSTVVFMFLQAGRVPEIIANMQAHTRPGGYNLIVAAMDTA 138 (195)
T ss_pred E---------------------------------------EEecccccCCHHHHHHHHHHHHHHhCCCcEEEEEEecccC
Confidence 7 77888999998899999999999999999
Q ss_pred ---------ccCCHHHHHHHHHhCCCeEEEEE
Q 036440 146 ---------KLSTEKELESLFVEVHFHHYKIT 168 (181)
Q Consensus 146 ---------~eRt~~E~~~Ll~~aGf~~~~i~ 168 (181)
...+.+|+++++. +|++....
T Consensus 139 ~~~~~~~~~~~~~~~el~~~f~--~~~~~~~~ 168 (195)
T TIGR00477 139 DYPCHMPFSFTFKEDELRQYYA--DWELLKYN 168 (195)
T ss_pred CCCCCCCcCccCCHHHHHHHhC--CCeEEEee
Confidence 1367889999886 58887766
|
Part of a tellurite-reducing operon tehA and tehB |
| >TIGR00138 gidB 16S rRNA methyltransferase GidB | Back alignment and domain information |
|---|
Probab=97.06 E-value=0.0079 Score=49.06 Aligned_cols=102 Identities=19% Similarity=0.192 Sum_probs=74.3
Q ss_pred CCeEEEec------------CCCCceEEEeechh-hhhhhc------cCCCceEEecCCCCCC--CCcceEeccccchhh
Q 036440 28 LGSLVDVG------------AFPCVKCTEFDQPH-VVANLL------DTNNLKYLADDFFQSI--PPVCMIPLRLGYSHI 86 (181)
Q Consensus 28 ~~~lvDvG------------~~P~l~~~~~DlP~-Vv~~a~------~~~ri~~~~gDff~~~--P~~d~~~~~~~~~~~ 86 (181)
-.+++|+| .+|..+.+.+|.-. .++.+. ..++++++.+|+.+-. ...|++
T Consensus 43 ~~~vLDiGcGtG~~s~~la~~~~~~~V~~iD~s~~~~~~a~~~~~~~~~~~i~~i~~d~~~~~~~~~fD~I--------- 113 (181)
T TIGR00138 43 GKKVIDIGSGAGFPGIPLAIARPELKLTLLESNHKKVAFLREVKAELGLNNVEIVNGRAEDFQHEEQFDVI--------- 113 (181)
T ss_pred CCeEEEecCCCCccHHHHHHHCCCCeEEEEeCcHHHHHHHHHHHHHhCCCCeEEEecchhhccccCCccEE---------
Confidence 47999999 57888999999854 333322 1347999999987621 236777
Q ss_pred hHHhhhhhhhhcCCCccchhhhhhcccccceeeeeeccCChHHHHHHHHHHHHHhccCC------ccCCHHHHHHHHHh-
Q 036440 87 KIMIAFFIRLVVGRGRLHIFSWLNFMKRVINMQIIIHVFGDEESVKILKICREAITSKA------KLSTEKELESLFVE- 159 (181)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~iLHdw~D~~~~~iL~~~~~a~~~~g------~eRt~~E~~~Ll~~- 159 (181)
+... +|+. ..+++.+...++||| ......++..+.+.
T Consensus 114 ------------------------------~s~~-~~~~-----~~~~~~~~~~LkpgG~lvi~~~~~~~~~~~~~~e~~ 157 (181)
T TIGR00138 114 ------------------------------TSRA-LASL-----NVLLELTLNLLKVGGYFLAYKGKKYLDEIEEAKRKC 157 (181)
T ss_pred ------------------------------Eehh-hhCH-----HHHHHHHHHhcCCCCEEEEEcCCCcHHHHHHHHHhh
Confidence 3332 4433 247888899999999 77788888888887
Q ss_pred --CCCeEEEEEEcCCCC
Q 036440 160 --VHFHHYKITPLFGLP 174 (181)
Q Consensus 160 --aGf~~~~i~~~~~~~ 174 (181)
.||..+++.+..+++
T Consensus 158 ~~~~~~~~~~~~~~~~~ 174 (181)
T TIGR00138 158 QVLGVEPLEVPPLTGPD 174 (181)
T ss_pred hhcCceEeeccccCCCc
Confidence 799999998887753
|
GidB (glucose-inhibited division protein B) appears to be present and in a single copy in nearly all complete eubacterial genomes. It is missing only from some obligate intracellular species of various lineages (Chlamydiae, Ehrlichia, Wolbachia, Anaplasma, Buchnera, etc.). GidB shows a methytransferase fold in its the crystal structure, and acts as a 7-methylguanosine (m(7)G) methyltransferase, apparently specific to 16S rRNA. |
| >PRK14968 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=97.05 E-value=0.039 Score=43.15 Aligned_cols=122 Identities=16% Similarity=0.166 Sum_probs=75.2
Q ss_pred cCCCeEEEec-----------CCCCceEEEeec-hhhhhhhcc-------CCC-ceEEecCCCCCCCC--cceEeccccc
Q 036440 26 ERLGSLVDVG-----------AFPCVKCTEFDQ-PHVVANLLD-------TNN-LKYLADDFFQSIPP--VCMIPLRLGY 83 (181)
Q Consensus 26 ~~~~~lvDvG-----------~~P~l~~~~~Dl-P~Vv~~a~~-------~~r-i~~~~gDff~~~P~--~d~~~~~~~~ 83 (181)
.+-.+++|+| +. ..+.+.+|. |.+++.+.. .++ +.++.+|+++.++. .|++..+..|
T Consensus 22 ~~~~~vLd~G~G~G~~~~~l~~~-~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~d~vi~n~p~ 100 (188)
T PRK14968 22 KKGDRVLEVGTGSGIVAIVAAKN-GKKVVGVDINPYAVECAKCNAKLNNIRNNGVEVIRSDLFEPFRGDKFDVILFNPPY 100 (188)
T ss_pred cCCCEEEEEccccCHHHHHHHhh-cceEEEEECCHHHHHHHHHHHHHcCCCCcceEEEeccccccccccCceEEEECCCc
Confidence 4557899999 33 567899998 566665521 233 89999999987665 5777444332
Q ss_pred hhhhHHhhhhhhhhcCCCccchhhhhhcccccceeeeeeccCC--hHHHHHHHHHHHHHhccCC-------ccCCHHHHH
Q 036440 84 SHIKIMIAFFIRLVVGRGRLHIFSWLNFMKRVINMQIIIHVFG--DEESVKILKICREAITSKA-------KLSTEKELE 154 (181)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~iLHdw~--D~~~~~iL~~~~~a~~~~g-------~eRt~~E~~ 154 (181)
.... +...+-. .....+|... ......+++.+...|+|+| -....+++.
T Consensus 101 ~~~~----------------~~~~~~~------~~~~~~~~~~~~~~~~~~~i~~~~~~Lk~gG~~~~~~~~~~~~~~l~ 158 (188)
T PRK14968 101 LPTE----------------EEEEWDD------WLNYALSGGKDGREVIDRFLDEVGRYLKPGGRILLLQSSLTGEDEVL 158 (188)
T ss_pred CCCC----------------chhhhhh------hhhhhhccCcChHHHHHHHHHHHHHhcCCCeEEEEEEcccCCHHHHH
Confidence 1000 0000000 0011222222 2334578999999999999 233568899
Q ss_pred HHHHhCCCeEEEEEEc
Q 036440 155 SLFVEVHFHHYKITPL 170 (181)
Q Consensus 155 ~Ll~~aGf~~~~i~~~ 170 (181)
.++.++||+...+...
T Consensus 159 ~~~~~~g~~~~~~~~~ 174 (188)
T PRK14968 159 EYLEKLGFEAEVVAEE 174 (188)
T ss_pred HHHHHCCCeeeeeeec
Confidence 9999999998877643
|
|
| >PRK05134 bifunctional 3-demethylubiquinone-9 3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol methylase; Provisional | Back alignment and domain information |
|---|
Probab=97.01 E-value=0.011 Score=48.70 Aligned_cols=23 Identities=22% Similarity=0.251 Sum_probs=19.5
Q ss_pred ccCCHHHHHHHHHhCCCeEEEEE
Q 036440 146 KLSTEKELESLFVEVHFHHYKIT 168 (181)
Q Consensus 146 ~eRt~~E~~~Ll~~aGf~~~~i~ 168 (181)
+..+.++|..+++++||..+.+.
T Consensus 182 ~~~~~~~~~~~l~~~Gf~~v~~~ 204 (233)
T PRK05134 182 KFIKPSELAAWLRQAGLEVQDIT 204 (233)
T ss_pred hcCCHHHHHHHHHHCCCeEeeee
Confidence 34578899999999999998775
|
|
| >PF08242 Methyltransf_12: Methyltransferase domain; InterPro: IPR013217 Methyl transfer from the ubiquitous donor S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=96.96 E-value=0.00055 Score=48.98 Aligned_cols=70 Identities=16% Similarity=0.282 Sum_probs=42.2
Q ss_pred CCCCceEEEeec-hhhhhhhcc---------CCCceEEecCCCCCCC--CcceEeccccchhhhHHhhhhhhhhcCCCcc
Q 036440 36 AFPCVKCTEFDQ-PHVVANLLD---------TNNLKYLADDFFQSIP--PVCMIPLRLGYSHIKIMIAFFIRLVVGRGRL 103 (181)
Q Consensus 36 ~~P~l~~~~~Dl-P~Vv~~a~~---------~~ri~~~~gDff~~~P--~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 103 (181)
++|..+.+..|. |..++.++. ..++++...|.++..+ ..|++
T Consensus 17 ~~~~~~~~~~D~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~V-------------------------- 70 (99)
T PF08242_consen 17 ELPDARYTGVDISPSMLERARERLAELGNDNFERLRFDVLDLFDYDPPESFDLV-------------------------- 70 (99)
T ss_dssp HC-EEEEEEEESSSSTTSTTCCCHHHCT---EEEEE--SSS---CCC----SEE--------------------------
T ss_pred hCCCCEEEEEECCHHHHHHHHHHhhhcCCcceeEEEeecCChhhccccccccee--------------------------
Confidence 679999999998 566655542 1255666666665544 47888
Q ss_pred chhhhhhcccccceeeeeeccCChHHHHHHHHHHHHHhccCCc
Q 036440 104 HIFSWLNFMKRVINMQIIIHVFGDEESVKILKICREAITSKAK 146 (181)
Q Consensus 104 ~~~~~~~~~~~~~~l~~iLHdw~D~~~~~iL~~~~~a~~~~g~ 146 (181)
++..+||.+ ++-..+|++++..++|||+
T Consensus 71 -------------~~~~vl~~l--~~~~~~l~~~~~~L~pgG~ 98 (99)
T PF08242_consen 71 -------------VASNVLHHL--EDIEAVLRNIYRLLKPGGI 98 (99)
T ss_dssp -------------EEE-TTS----S-HHHHHHHHTTT-TSS-E
T ss_pred -------------hhhhhHhhh--hhHHHHHHHHHHHcCCCCC
Confidence 899999999 4455899999999999984
|
The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] Fatty acid synthase (2.3.1.85 from EC), a biosynthetic enzyme catalysing the formation of long-chain fatty acids Glycine N-methyltransferase (2.1.1.20 from EC) which catalyses the SAM-dependent methylation of glycine to form sarcosine and may play a role in regulating the methylation potential of the cell [] Enniatin synthetase, involved in non-ribosomal biosynthesis of cyclohexadepsipeptidase, enniatin [] Histamine N-methyltransferase (2.1.1.8 from EC), a SAM-dependent histamine-inactivating enzyme [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ].; PDB: 2VZ8_A 2VZ9_A. |
| >PRK04266 fibrillarin; Provisional | Back alignment and domain information |
|---|
Probab=96.93 E-value=0.028 Score=47.72 Aligned_cols=120 Identities=11% Similarity=0.009 Sum_probs=73.9
Q ss_pred HHHHHHhh-hhhcCCCeEEEec------------CCCCceEEEeec-hhhhh----hhccCCCceEEecCCCCCCCCcce
Q 036440 15 SLALKYCK-QIFERLGSLVDVG------------AFPCVKCTEFDQ-PHVVA----NLLDTNNLKYLADDFFQSIPPVCM 76 (181)
Q Consensus 15 ~~~l~~~~-~d~~~~~~lvDvG------------~~P~l~~~~~Dl-P~Vv~----~a~~~~ri~~~~gDff~~~P~~d~ 76 (181)
..++..++ =+.+.-.+|+|+| ..+.-+.+.+|. |+.++ .+...+++.++.+|..++.+..+.
T Consensus 59 ~~ll~~~~~l~i~~g~~VlD~G~G~G~~~~~la~~v~~g~V~avD~~~~ml~~l~~~a~~~~nv~~i~~D~~~~~~~~~l 138 (226)
T PRK04266 59 AAILKGLKNFPIKKGSKVLYLGAASGTTVSHVSDIVEEGVVYAVEFAPRPMRELLEVAEERKNIIPILADARKPERYAHV 138 (226)
T ss_pred HHHHhhHhhCCCCCCCEEEEEccCCCHHHHHHHHhcCCCeEEEEECCHHHHHHHHHHhhhcCCcEEEECCCCCcchhhhc
Confidence 44555331 0455667999999 445457788898 54333 333346789998997642100000
Q ss_pred EeccccchhhhHHhhhhhhhhcCCCccchhhhhhcccccceeeeeeccCChH-HHHHHHHHHHHHhccCCc---------
Q 036440 77 IPLRLGYSHIKIMIAFFIRLVVGRGRLHIFSWLNFMKRVINMQIIIHVFGDE-ESVKILKICREAITSKAK--------- 146 (181)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~iLHdw~D~-~~~~iL~~~~~a~~~~g~--------- 146 (181)
. . -+..|+|+..+. ....+|++++..++|||+
T Consensus 139 ~-~-------------------------------------~~D~i~~d~~~p~~~~~~L~~~~r~LKpGG~lvI~v~~~~ 180 (226)
T PRK04266 139 V-E-------------------------------------KVDVIYQDVAQPNQAEIAIDNAEFFLKDGGYLLLAIKARS 180 (226)
T ss_pred c-c-------------------------------------cCCEEEECCCChhHHHHHHHHHHHhcCCCcEEEEEEeccc
Confidence 0 0 113344665543 334568999999999992
Q ss_pred -------cCCHHHHHHHHHhCCCeEEEEEEcCC
Q 036440 147 -------LSTEKELESLFVEVHFHHYKITPLFG 172 (181)
Q Consensus 147 -------eRt~~E~~~Ll~~aGf~~~~i~~~~~ 172 (181)
.|..++...+++++||+.++...+..
T Consensus 181 ~d~~~~~~~~~~~~~~~l~~aGF~~i~~~~l~p 213 (226)
T PRK04266 181 IDVTKDPKEIFKEEIRKLEEGGFEILEVVDLEP 213 (226)
T ss_pred ccCcCCHHHHHHHHHHHHHHcCCeEEEEEcCCC
Confidence 23334567999999999998876643
|
|
| >smart00138 MeTrc Methyltransferase, chemotaxis proteins | Back alignment and domain information |
|---|
Probab=96.88 E-value=0.0055 Score=52.76 Aligned_cols=68 Identities=15% Similarity=0.210 Sum_probs=56.2
Q ss_pred CceEEEeec-hhhhhhhcc---------------------------------CCCceEEecCCCCCCC-C--cceEeccc
Q 036440 39 CVKCTEFDQ-PHVVANLLD---------------------------------TNNLKYLADDFFQSIP-P--VCMIPLRL 81 (181)
Q Consensus 39 ~l~~~~~Dl-P~Vv~~a~~---------------------------------~~ri~~~~gDff~~~P-~--~d~~~~~~ 81 (181)
..+.+..|+ |..++.|.. .++|++..+|+.+..| . .|++
T Consensus 132 ~~~I~g~Dis~~~L~~Ar~~~y~~~~~~~~~~~~~~~yf~~~~~~~~v~~~ir~~V~F~~~dl~~~~~~~~~fD~I---- 207 (264)
T smart00138 132 DVKILATDIDLKALEKARAGIYPERELEDLPKALLARYFSRVEDKYRVKPELKERVRFAKHNLLAESPPLGDFDLI---- 207 (264)
T ss_pred CeEEEEEECCHHHHHHHHcCCCCHHHHhcCCHHHHhhhEEeCCCeEEEChHHhCcCEEeeccCCCCCCccCCCCEE----
Confidence 578899998 556665542 1478999999997543 2 5888
Q ss_pred cchhhhHHhhhhhhhhcCCCccchhhhhhcccccceeeeeeccCChHHHHHHHHHHHHHhccCC
Q 036440 82 GYSHIKIMIAFFIRLVVGRGRLHIFSWLNFMKRVINMQIIIHVFGDEESVKILKICREAITSKA 145 (181)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~iLHdw~D~~~~~iL~~~~~a~~~~g 145 (181)
+.+++||.|+++...++|++++.+++|||
T Consensus 208 -----------------------------------~crnvl~yf~~~~~~~~l~~l~~~L~pGG 236 (264)
T smart00138 208 -----------------------------------FCRNVLIYFDEPTQRKLLNRFAEALKPGG 236 (264)
T ss_pred -----------------------------------EechhHHhCCHHHHHHHHHHHHHHhCCCe
Confidence 88999999999999999999999999999
|
Methylates methyl-accepting chemotaxis proteins to form gamma-glutamyl methyl ester residues. |
| >KOG1540 consensus Ubiquinone biosynthesis methyltransferase COQ5 [Coenzyme transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.87 E-value=0.0092 Score=53.14 Aligned_cols=38 Identities=18% Similarity=0.228 Sum_probs=28.2
Q ss_pred ceEEEeec-hhhhhhhcc---------CCCceEEecCCCC-CCCC--cceE
Q 036440 40 VKCTEFDQ-PHVVANLLD---------TNNLKYLADDFFQ-SIPP--VCMI 77 (181)
Q Consensus 40 l~~~~~Dl-P~Vv~~a~~---------~~ri~~~~gDff~-~~P~--~d~~ 77 (181)
-+.++.|+ |+.++.+.. ..|+.++.+|.=+ ++|. .|.|
T Consensus 131 ~~V~v~Dinp~mL~vgkqRa~~~~l~~~~~~~w~~~dAE~LpFdd~s~D~y 181 (296)
T KOG1540|consen 131 SKVTVLDINPHMLAVGKQRAKKRPLKASSRVEWVEGDAEDLPFDDDSFDAY 181 (296)
T ss_pred ceEEEEeCCHHHHHHHHHHHhhcCCCcCCceEEEeCCcccCCCCCCcceeE
Confidence 57899998 676665531 4569999999875 5665 6888
|
|
| >PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4) | Back alignment and domain information |
|---|
Probab=96.86 E-value=0.013 Score=51.15 Aligned_cols=135 Identities=14% Similarity=0.114 Sum_probs=63.3
Q ss_pred hhcCCCeEEEec------------CCCCceEEEeechh-hhh-------hhccCCCceEEecCCCCCCCCcceEecccc-
Q 036440 24 IFERLGSLVDVG------------AFPCVKCTEFDQPH-VVA-------NLLDTNNLKYLADDFFQSIPPVCMIPLRLG- 82 (181)
Q Consensus 24 d~~~~~~lvDvG------------~~P~l~~~~~DlP~-Vv~-------~a~~~~ri~~~~gDff~~~P~~d~~~~~~~- 82 (181)
+.+.-.+||||| +| +++++.+.+-. -.+ .+.+.+++++.-.|+.+--+.-|.+ .+.+
T Consensus 59 ~l~~G~~vLDiGcGwG~~~~~~a~~~-g~~v~gitlS~~Q~~~a~~~~~~~gl~~~v~v~~~D~~~~~~~fD~I-vSi~~ 136 (273)
T PF02353_consen 59 GLKPGDRVLDIGCGWGGLAIYAAERY-GCHVTGITLSEEQAEYARERIREAGLEDRVEVRLQDYRDLPGKFDRI-VSIEM 136 (273)
T ss_dssp T--TT-EEEEES-TTSHHHHHHHHHH---EEEEEES-HHHHHHHHHHHHCSTSSSTEEEEES-GGG---S-SEE-EEESE
T ss_pred CCCCCCEEEEeCCCccHHHHHHHHHc-CcEEEEEECCHHHHHHHHHHHHhcCCCCceEEEEeeccccCCCCCEE-EEEec
Confidence 456667999999 66 78888888743 222 2235789999999987633346665 0000
Q ss_pred chhh--hHHhhhhhhhhcCCCccchhhhhhcccccceeeeeeccCChHHHHHH--HHHHHHHhccCCccCCHHHHHHHHH
Q 036440 83 YSHI--KIMIAFFIRLVVGRGRLHIFSWLNFMKRVINMQIIIHVFGDEESVKI--LKICREAITSKAKLSTEKELESLFV 158 (181)
Q Consensus 83 ~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~iLHdw~D~~~~~i--L~~~~~a~~~~g~eRt~~E~~~Ll~ 158 (181)
+-|+ +-.-+||-++ ..|++-+ +.+++..|.+.-.....-.- ..-+..-+=|||...|.+++...++
T Consensus 137 ~Ehvg~~~~~~~f~~~---------~~~Lkpg-G~~~lq~i~~~~~~~~~~~~~~~~~i~kyiFPgg~lps~~~~~~~~~ 206 (273)
T PF02353_consen 137 FEHVGRKNYPAFFRKI---------SRLLKPG-GRLVLQTITHRDPPYHAERRSSSDFIRKYIFPGGYLPSLSEILRAAE 206 (273)
T ss_dssp GGGTCGGGHHHHHHHH---------HHHSETT-EEEEEEEEEE--HHHHHCTTCCCHHHHHHTSTTS---BHHHHHHHHH
T ss_pred hhhcChhHHHHHHHHH---------HHhcCCC-cEEEEEecccccccchhhcCCCceEEEEeeCCCCCCCCHHHHHHHHh
Confidence 0011 1111222211 1111111 13344444443222221000 0223455557778899999999999
Q ss_pred hCCCeEEEEEEc
Q 036440 159 EVHFHHYKITPL 170 (181)
Q Consensus 159 ~aGf~~~~i~~~ 170 (181)
++||.+..+...
T Consensus 207 ~~~l~v~~~~~~ 218 (273)
T PF02353_consen 207 DAGLEVEDVENL 218 (273)
T ss_dssp HTT-EEEEEEE-
T ss_pred cCCEEEEEEEEc
Confidence 999999887754
|
All are thought to be S-adenosyl-L-methionine (SAM) utilising methyltransferases []. Mycolic acid cyclopropane synthase or cyclopropane-fatty-acyl-phospholipid synthase (CFA synthase) 2.1.1.79 from EC catalyses the reaction: |
| >PF11968 DUF3321: Putative methyltransferase (DUF3321); InterPro: IPR021867 This family is conserved in fungi and is annotated as being a nucleolar protein | Back alignment and domain information |
|---|
Probab=96.85 E-value=0.014 Score=50.35 Aligned_cols=96 Identities=18% Similarity=0.318 Sum_probs=72.1
Q ss_pred CeEEEec---------CCCCceEEEeechhhhhhhccCCCceEEecCCCC-CCCC-----cceEeccccchhhhHHhhhh
Q 036440 29 GSLVDVG---------AFPCVKCTEFDQPHVVANLLDTNNLKYLADDFFQ-SIPP-----VCMIPLRLGYSHIKIMIAFF 93 (181)
Q Consensus 29 ~~lvDvG---------~~P~l~~~~~DlP~Vv~~a~~~~ri~~~~gDff~-~~P~-----~d~~~~~~~~~~~~~~~~~~ 93 (181)
-++|||| .++.+..+-+||-+ ..=.+...||++ ++|. .|++
T Consensus 53 lrlLEVGals~~N~~s~~~~fdvt~IDLns--------~~~~I~qqDFm~rplp~~~~e~FdvI---------------- 108 (219)
T PF11968_consen 53 LRLLEVGALSTDNACSTSGWFDVTRIDLNS--------QHPGILQQDFMERPLPKNESEKFDVI---------------- 108 (219)
T ss_pred ceEEeecccCCCCcccccCceeeEEeecCC--------CCCCceeeccccCCCCCCcccceeEE----------------
Confidence 3899999 34445556666543 222456789997 5885 3666
Q ss_pred hhhhcCCCccchhhhhhcccccceeeeeeccCChH-HHHHHHHHHHHHhccCC-------------------ccCCHHHH
Q 036440 94 IRLVVGRGRLHIFSWLNFMKRVINMQIIIHVFGDE-ESVKILKICREAITSKA-------------------KLSTEKEL 153 (181)
Q Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~~l~~iLHdw~D~-~~~~iL~~~~~a~~~~g-------------------~eRt~~E~ 153 (181)
.++-||.--++. +.-+.|+++++-+.++| |--|.+.|
T Consensus 109 -----------------------s~SLVLNfVP~p~~RG~Ml~r~~~fL~~~g~~~~~~LFlVlP~~Cv~NSRy~~~~~l 165 (219)
T PF11968_consen 109 -----------------------SLSLVLNFVPDPKQRGEMLRRAHKFLKPPGLSLFPSLFLVLPLPCVTNSRYMTEERL 165 (219)
T ss_pred -----------------------EEEEEEeeCCCHHHHHHHHHHHHHHhCCCCccCcceEEEEeCchHhhcccccCHHHH
Confidence 788888777754 45599999999999998 67788999
Q ss_pred HHHHHhCCCeEEEEEEcC
Q 036440 154 ESLFVEVHFHHYKITPLF 171 (181)
Q Consensus 154 ~~Ll~~aGf~~~~i~~~~ 171 (181)
+.+++.-||..++-....
T Consensus 166 ~~im~~LGf~~~~~~~~~ 183 (219)
T PF11968_consen 166 REIMESLGFTRVKYKKSK 183 (219)
T ss_pred HHHHHhCCcEEEEEEecC
Confidence 999999999998876554
|
|
| >TIGR02081 metW methionine biosynthesis protein MetW | Back alignment and domain information |
|---|
Probab=96.82 E-value=0.014 Score=47.20 Aligned_cols=25 Identities=16% Similarity=0.252 Sum_probs=21.6
Q ss_pred ccCCHHHHHHHHHhCCCeEEEEEEc
Q 036440 146 KLSTEKELESLFVEVHFHHYKITPL 170 (181)
Q Consensus 146 ~eRt~~E~~~Ll~~aGf~~~~i~~~ 170 (181)
+..|.+++.++++++||+++...-.
T Consensus 144 ~~~s~~~~~~ll~~~Gf~v~~~~~~ 168 (194)
T TIGR02081 144 HFCTIADFEDLCGELNLRILDRAAF 168 (194)
T ss_pred ccCcHHHHHHHHHHCCCEEEEEEEe
Confidence 5679999999999999999877644
|
This protein is found alongside MetX, of the enzyme that acylates homoserine as a first step toward methionine biosynthesis, in many species. It appears to act in methionine biosynthesis but is not fully characterized. |
| >PRK10258 biotin biosynthesis protein BioC; Provisional | Back alignment and domain information |
|---|
Probab=96.77 E-value=0.023 Score=47.43 Aligned_cols=61 Identities=18% Similarity=0.229 Sum_probs=39.4
Q ss_pred HHHHHHhhhhhcCCCeEEEec----------CCCCceEEEeec-hhhhhhhcc-CCCceEEecCCCC-CCCC--cceE
Q 036440 15 SLALKYCKQIFERLGSLVDVG----------AFPCVKCTEFDQ-PHVVANLLD-TNNLKYLADDFFQ-SIPP--VCMI 77 (181)
Q Consensus 15 ~~~l~~~~~d~~~~~~lvDvG----------~~P~l~~~~~Dl-P~Vv~~a~~-~~ri~~~~gDff~-~~P~--~d~~ 77 (181)
..+++..+ -....+|+|+| +-++.+.+.+|+ |..++.+.. ...+.++.+|+-+ ++|. .|++
T Consensus 32 ~~l~~~l~--~~~~~~vLDiGcG~G~~~~~l~~~~~~v~~~D~s~~~l~~a~~~~~~~~~~~~d~~~~~~~~~~fD~V 107 (251)
T PRK10258 32 DALLAMLP--QRKFTHVLDAGCGPGWMSRYWRERGSQVTALDLSPPMLAQARQKDAADHYLAGDIESLPLATATFDLA 107 (251)
T ss_pred HHHHHhcC--ccCCCeEEEeeCCCCHHHHHHHHcCCeEEEEECCHHHHHHHHhhCCCCCEEEcCcccCcCCCCcEEEE
Confidence 44555552 23467899999 334567899999 777776654 2346788888854 2333 4777
|
|
| >PF08241 Methyltransf_11: Methyltransferase domain; InterPro: IPR013216 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=96.68 E-value=0.006 Score=41.83 Aligned_cols=70 Identities=10% Similarity=0.160 Sum_probs=52.8
Q ss_pred CCCCceEEEeechh-hhhhhcc---CCCceEEecCCCC-CCCC--cceEeccccchhhhHHhhhhhhhhcCCCccchhhh
Q 036440 36 AFPCVKCTEFDQPH-VVANLLD---TNNLKYLADDFFQ-SIPP--VCMIPLRLGYSHIKIMIAFFIRLVVGRGRLHIFSW 108 (181)
Q Consensus 36 ~~P~l~~~~~DlP~-Vv~~a~~---~~ri~~~~gDff~-~~P~--~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 108 (181)
++|..+.+.+|.-. .++.+.. ..++.+..+|+.+ ++|. .|++
T Consensus 16 ~~~~~~v~~~D~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~sfD~v------------------------------- 64 (95)
T PF08241_consen 16 KRGGASVTGIDISEEMLEQARKRLKNEGVSFRQGDAEDLPFPDNSFDVV------------------------------- 64 (95)
T ss_dssp HTTTCEEEEEES-HHHHHHHHHHTTTSTEEEEESBTTSSSS-TT-EEEE-------------------------------
T ss_pred hccCCEEEEEeCCHHHHHHHHhcccccCchheeehHHhCcccccccccc-------------------------------
Confidence 45888899999854 4555442 5667799999876 3443 5888
Q ss_pred hhcccccceeeeeeccCChHHHHHHHHHHHHHhccCCc
Q 036440 109 LNFMKRVINMQIIIHVFGDEESVKILKICREAITSKAK 146 (181)
Q Consensus 109 ~~~~~~~~~l~~iLHdw~D~~~~~iL~~~~~a~~~~g~ 146 (181)
+...++|.+ ++..++++.+...++|+|+
T Consensus 65 --------~~~~~~~~~--~~~~~~l~e~~rvLk~gG~ 92 (95)
T PF08241_consen 65 --------FSNSVLHHL--EDPEAALREIYRVLKPGGR 92 (95)
T ss_dssp --------EEESHGGGS--SHHHHHHHHHHHHEEEEEE
T ss_pred --------ccccceeec--cCHHHHHHHHHHHcCcCeE
Confidence 888899888 7778899999999999984
|
The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Arsenite methyltransferase (2.1.1.137 from EC) which converts arsenical compounds to their methylated forms [] Biotin synthesis protein bioC, which is involved in the early stages of biotin biosyntheis [] Arginine N-methyltransferase 1, an arginine-methylating enzyme which acts on residues present in a glycine and argine-rich domain and can methylate histones [] Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Sterol 24-C-methyltransferase (2.1.1.41 from EC), shown to participate in ergosterol biosynthesis [] 3-demethylubiquinone-9 3-methyltransferase (2.1.1.64 from EC) involved in ubiquinone biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ]. ; GO: 0008168 methyltransferase activity, 0008152 metabolic process; PDB: 3CGG_B 3CCF_B 3BKW_B 2PXX_A 3I9F_A 2YQZ_B 2YR0_A 3BUS_A 3EGE_A 3G5L_B .... |
| >TIGR03840 TMPT_Se_Te thiopurine S-methyltransferase, Se/Te detoxification family | Back alignment and domain information |
|---|
Probab=96.67 E-value=0.053 Score=45.47 Aligned_cols=102 Identities=14% Similarity=0.144 Sum_probs=76.1
Q ss_pred CCCeEEEec----------CCCCceEEEeechh-hhhhhc------------------cCCCceEEecCCCCCCC----C
Q 036440 27 RLGSLVDVG----------AFPCVKCTEFDQPH-VVANLL------------------DTNNLKYLADDFFQSIP----P 73 (181)
Q Consensus 27 ~~~~lvDvG----------~~P~l~~~~~DlP~-Vv~~a~------------------~~~ri~~~~gDff~~~P----~ 73 (181)
.-++++|+| +--+...+.+|+-+ .++.+. ...+|++..+|+|+-.+ .
T Consensus 34 ~~~rvLd~GCG~G~da~~LA~~G~~V~gvD~S~~Ai~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~~~ 113 (213)
T TIGR03840 34 AGARVFVPLCGKSLDLAWLAEQGHRVLGVELSEIAVEQFFAENGLTPTVTQQGEFTRYRAGNIEIFCGDFFALTAADLGP 113 (213)
T ss_pred CCCeEEEeCCCchhHHHHHHhCCCeEEEEeCCHHHHHHHHHHcCCCcceeccccceeeecCceEEEEccCCCCCcccCCC
Confidence 447999999 44577899999854 444321 13579999999997432 2
Q ss_pred cceEeccccchhhhHHhhhhhhhhcCCCccchhhhhhcccccceeeeeeccCChHHHHHHHHHHHHHhccCC--------
Q 036440 74 VCMIPLRLGYSHIKIMIAFFIRLVVGRGRLHIFSWLNFMKRVINMQIIIHVFGDEESVKILKICREAITSKA-------- 145 (181)
Q Consensus 74 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~iLHdw~D~~~~~iL~~~~~a~~~~g-------- 145 (181)
-|.+ +-+.++|..+.+...+.++++.++++|||
T Consensus 114 fD~i---------------------------------------~D~~~~~~l~~~~R~~~~~~l~~lLkpgG~~ll~~~~ 154 (213)
T TIGR03840 114 VDAV---------------------------------------YDRAALIALPEEMRQRYAAHLLALLPPGARQLLITLD 154 (213)
T ss_pred cCEE---------------------------------------EechhhccCCHHHHHHHHHHHHHHcCCCCeEEEEEEE
Confidence 4776 56666778899999999999999999999
Q ss_pred ----------ccCCHHHHHHHHHhCCCeEEEEE
Q 036440 146 ----------KLSTEKELESLFVEVHFHHYKIT 168 (181)
Q Consensus 146 ----------~eRt~~E~~~Ll~~aGf~~~~i~ 168 (181)
...|.+|++++|.. +|.+..+.
T Consensus 155 ~~~~~~~gpp~~~~~~eL~~~f~~-~~~i~~~~ 186 (213)
T TIGR03840 155 YDQSEMAGPPFSVSPAEVEALYGG-HYEIELLE 186 (213)
T ss_pred cCCCCCCCcCCCCCHHHHHHHhcC-CceEEEEe
Confidence 35788999999964 56655544
|
Members of this family are thiopurine S-methyltransferase from a branch in which at least some member proteins can perform selenium methylation as a means to detoxify selenium, or perform a related detoxification of tellurium. Note that the EC number definition does not specify a particular thiopurine, but rather represents a class of activity. |
| >PRK03612 spermidine synthase; Provisional | Back alignment and domain information |
|---|
Probab=96.64 E-value=0.006 Score=57.51 Aligned_cols=93 Identities=16% Similarity=0.228 Sum_probs=67.5
Q ss_pred cCCCeEEEec-----------CCCC-ceEEEeec-hhhhhhhcc-------------CCCceEEecCCCCC---CCC-cc
Q 036440 26 ERLGSLVDVG-----------AFPC-VKCTEFDQ-PHVVANLLD-------------TNNLKYLADDFFQS---IPP-VC 75 (181)
Q Consensus 26 ~~~~~lvDvG-----------~~P~-l~~~~~Dl-P~Vv~~a~~-------------~~ri~~~~gDff~~---~P~-~d 75 (181)
.+.++|+|+| ++|. .+.+.+|+ |.+++.++. .+|++++.+|.++- .+. .|
T Consensus 296 ~~~~rVL~IG~G~G~~~~~ll~~~~v~~v~~VEid~~vi~~ar~~~~l~~~~~~~~~dprv~vi~~Da~~~l~~~~~~fD 375 (521)
T PRK03612 296 ARPRRVLVLGGGDGLALREVLKYPDVEQVTLVDLDPAMTELARTSPALRALNGGALDDPRVTVVNDDAFNWLRKLAEKFD 375 (521)
T ss_pred CCCCeEEEEcCCccHHHHHHHhCCCcCeEEEEECCHHHHHHHHhCCcchhhhccccCCCceEEEEChHHHHHHhCCCCCC
Confidence 3567999999 8887 68999999 788887653 36888888887752 222 46
Q ss_pred eEeccccchhhhHHhhhhhhhhcCCCccchhhhhhcccccceeeeeeccCChHH--------HHHHHHHHHHHhccCC--
Q 036440 76 MIPLRLGYSHIKIMIAFFIRLVVGRGRLHIFSWLNFMKRVINMQIIIHVFGDEE--------SVKILKICREAITSKA-- 145 (181)
Q Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~iLHdw~D~~--------~~~iL~~~~~a~~~~g-- 145 (181)
++ ++|++|.. ..+.++.+++.++|+|
T Consensus 376 vI--------------------------------------------i~D~~~~~~~~~~~L~t~ef~~~~~~~L~pgG~l 411 (521)
T PRK03612 376 VI--------------------------------------------IVDLPDPSNPALGKLYSVEFYRLLKRRLAPDGLL 411 (521)
T ss_pred EE--------------------------------------------EEeCCCCCCcchhccchHHHHHHHHHhcCCCeEE
Confidence 66 22333321 2468899999999999
Q ss_pred ---------ccCCHHHHHHHHHhCCC
Q 036440 146 ---------KLSTEKELESLFVEVHF 162 (181)
Q Consensus 146 ---------~eRt~~E~~~Ll~~aGf 162 (181)
..+...++.+.++++||
T Consensus 412 v~~~~~~~~~~~~~~~i~~~l~~~gf 437 (521)
T PRK03612 412 VVQSTSPYFAPKAFWSIEATLEAAGL 437 (521)
T ss_pred EEecCCcccchHHHHHHHHHHHHcCC
Confidence 34445678889999999
|
|
| >PF06080 DUF938: Protein of unknown function (DUF938); InterPro: IPR010342 This family consists of several hypothetical proteins from both prokaryotes and eukaryotes | Back alignment and domain information |
|---|
Probab=96.60 E-value=0.029 Score=47.75 Aligned_cols=59 Identities=5% Similarity=-0.059 Sum_probs=54.0
Q ss_pred eeeeeeccCChHHHHHHHHHHHHHhccCC---------------------------------ccCCHHHHHHHHHhCCCe
Q 036440 117 NMQIIIHVFGDEESVKILKICREAITSKA---------------------------------KLSTEKELESLFVEVHFH 163 (181)
Q Consensus 117 ~l~~iLHdw~D~~~~~iL~~~~~a~~~~g---------------------------------~eRt~~E~~~Ll~~aGf~ 163 (181)
+.-+++|--+-+.+..+++.....++++| -.|..+++..+.+++||+
T Consensus 107 ~~~N~lHI~p~~~~~~lf~~a~~~L~~gG~L~~YGPF~~~G~~ts~SN~~FD~sLr~rdp~~GiRD~e~v~~lA~~~GL~ 186 (204)
T PF06080_consen 107 FCINMLHISPWSAVEGLFAGAARLLKPGGLLFLYGPFNRDGKFTSESNAAFDASLRSRDPEWGIRDIEDVEALAAAHGLE 186 (204)
T ss_pred eehhHHHhcCHHHHHHHHHHHHHhCCCCCEEEEeCCcccCCEeCCcHHHHHHHHHhcCCCCcCccCHHHHHHHHHHCCCc
Confidence 78899999999999999999999999999 678899999999999999
Q ss_pred EEEEEEcCCCCe
Q 036440 164 HYKITPLFGLPS 175 (181)
Q Consensus 164 ~~~i~~~~~~~~ 175 (181)
..+++.+|..--
T Consensus 187 l~~~~~MPANN~ 198 (204)
T PF06080_consen 187 LEEDIDMPANNL 198 (204)
T ss_pred cCcccccCCCCe
Confidence 999999986543
|
The function of this family is unknown. |
| >PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=96.58 E-value=0.038 Score=49.67 Aligned_cols=124 Identities=17% Similarity=0.131 Sum_probs=77.5
Q ss_pred HHHHHHhhhhhcCCCeEEEec------------CCCCceEEEeech-hhhhhhcc-----CCCceEEecCCCCCCCC-cc
Q 036440 15 SLALKYCKQIFERLGSLVDVG------------AFPCVKCTEFDQP-HVVANLLD-----TNNLKYLADDFFQSIPP-VC 75 (181)
Q Consensus 15 ~~~l~~~~~d~~~~~~lvDvG------------~~P~l~~~~~DlP-~Vv~~a~~-----~~ri~~~~gDff~~~P~-~d 75 (181)
..+++.++ -...++++|+| .+|+.+.+..|.- ..++.+.. .-..+++..|.++.++. .|
T Consensus 186 ~lLl~~l~--~~~~g~VLDlGCG~G~ls~~la~~~p~~~v~~vDis~~Al~~A~~nl~~n~l~~~~~~~D~~~~~~~~fD 263 (342)
T PRK09489 186 QLLLSTLT--PHTKGKVLDVGCGAGVLSAVLARHSPKIRLTLSDVSAAALESSRATLAANGLEGEVFASNVFSDIKGRFD 263 (342)
T ss_pred HHHHHhcc--ccCCCeEEEeccCcCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCEEEEcccccccCCCcc
Confidence 44556563 22235899999 7899999999985 45544431 12356788898876554 68
Q ss_pred eEeccccchhhhHHhhhhhhhhcCCCccchhhhhhcccccceeeeeeccC---ChHHHHHHHHHHHHHhccCCcc----C
Q 036440 76 MIPLRLGYSHIKIMIAFFIRLVVGRGRLHIFSWLNFMKRVINMQIIIHVF---GDEESVKILKICREAITSKAKL----S 148 (181)
Q Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~iLHdw---~D~~~~~iL~~~~~a~~~~g~e----R 148 (181)
.+ +..--+|+. +.+...++++.+...++|||+. -
T Consensus 264 lI---------------------------------------vsNPPFH~g~~~~~~~~~~~i~~a~~~LkpgG~L~iVan 304 (342)
T PRK09489 264 MI---------------------------------------ISNPPFHDGIQTSLDAAQTLIRGAVRHLNSGGELRIVAN 304 (342)
T ss_pred EE---------------------------------------EECCCccCCccccHHHHHHHHHHHHHhcCcCCEEEEEEe
Confidence 87 555556653 4556789999999999999922 1
Q ss_pred CHHHHHHHHHhCCCeEEEEEEcCCCCeEEEEE
Q 036440 149 TEKELESLFVEVHFHHYKITPLFGLPSLIEVY 180 (181)
Q Consensus 149 t~~E~~~Ll~~aGf~~~~i~~~~~~~~viE~~ 180 (181)
+.--|..++++. |..+++.--.+...|.++.
T Consensus 305 ~~l~y~~~l~~~-Fg~~~~la~~~~f~v~~a~ 335 (342)
T PRK09489 305 AFLPYPDLLDET-FGSHEVLAQTGRFKVYRAI 335 (342)
T ss_pred CCCChHHHHHHH-cCCeEEEEeCCCEEEEEEE
Confidence 112344555543 5555554444444555543
|
|
| >PRK04457 spermidine synthase; Provisional | Back alignment and domain information |
|---|
Probab=96.50 E-value=0.029 Score=48.37 Aligned_cols=52 Identities=17% Similarity=0.251 Sum_probs=41.7
Q ss_pred cCCCeEEEec------------CCCCceEEEeec-hhhhhhhcc-------CCCceEEecCCCC---CCCC-cceE
Q 036440 26 ERLGSLVDVG------------AFPCVKCTEFDQ-PHVVANLLD-------TNNLKYLADDFFQ---SIPP-VCMI 77 (181)
Q Consensus 26 ~~~~~lvDvG------------~~P~l~~~~~Dl-P~Vv~~a~~-------~~ri~~~~gDff~---~~P~-~d~~ 77 (181)
+..++++|+| .+|+.+.+++|+ |.+++.+.. .+|++++.+|..+ ..|. .|++
T Consensus 65 ~~~~~vL~IG~G~G~l~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~rv~v~~~Da~~~l~~~~~~yD~I 140 (262)
T PRK04457 65 PRPQHILQIGLGGGSLAKFIYTYLPDTRQTAVEINPQVIAVARNHFELPENGERFEVIEADGAEYIAVHRHSTDVI 140 (262)
T ss_pred CCCCEEEEECCCHhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHcCCCCCCCceEEEECCHHHHHHhCCCCCCEE
Confidence 3567899999 789999999999 999987652 4799999999864 3443 6888
|
|
| >PRK11805 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=96.50 E-value=0.035 Score=49.00 Aligned_cols=117 Identities=19% Similarity=0.218 Sum_probs=76.0
Q ss_pred CeEEEec------------CCCCceEEEeec-hhhhhhhcc-------CCCceEEecCCCCCCCC--cceEeccccchhh
Q 036440 29 GSLVDVG------------AFPCVKCTEFDQ-PHVVANLLD-------TNNLKYLADDFFQSIPP--VCMIPLRLGYSHI 86 (181)
Q Consensus 29 ~~lvDvG------------~~P~l~~~~~Dl-P~Vv~~a~~-------~~ri~~~~gDff~~~P~--~d~~~~~~~~~~~ 86 (181)
.+++|+| .+|+.+.+.+|+ |..++.+.. .+||+++.+|+++.+|. .|++..+-=|...
T Consensus 135 ~~VLDlG~GsG~iai~la~~~p~~~V~avDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~l~~~~fDlIvsNPPyi~~ 214 (307)
T PRK11805 135 TRILDLCTGSGCIAIACAYAFPDAEVDAVDISPDALAVAEINIERHGLEDRVTLIESDLFAALPGRRYDLIVSNPPYVDA 214 (307)
T ss_pred CEEEEEechhhHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCCcEEEEECchhhhCCCCCccEEEECCCCCCc
Confidence 5899999 689999999999 777765532 46899999999987764 5877333211000
Q ss_pred hHHhhhhhhhhcCCCccchhhhhhcccccceeeeeecc---------CChHHHHHHHHHHHHHhccCC-----ccCCHHH
Q 036440 87 KIMIAFFIRLVVGRGRLHIFSWLNFMKRVINMQIIIHV---------FGDEESVKILKICREAITSKA-----KLSTEKE 152 (181)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~iLHd---------w~D~~~~~iL~~~~~a~~~~g-----~eRt~~E 152 (181)
.-+-. +...+.|. -+-+-..+|++.+...++||| --.+.++
T Consensus 215 ~~~~~-------------------------l~~~~~~eP~~AL~gg~dGl~~~~~i~~~a~~~L~pgG~l~~E~g~~~~~ 269 (307)
T PRK11805 215 EDMAD-------------------------LPAEYRHEPELALAAGDDGLDLVRRILAEAPDYLTEDGVLVVEVGNSRVH 269 (307)
T ss_pred cchhh-------------------------cCHhhccCccceeeCCCchHHHHHHHHHHHHHhcCCCCEEEEEECcCHHH
Confidence 00000 00111110 012334689999999999999 2224667
Q ss_pred HHHHHHhCCCeEEEEEEc
Q 036440 153 LESLFVEVHFHHYKITPL 170 (181)
Q Consensus 153 ~~~Ll~~aGf~~~~i~~~ 170 (181)
..+++.+.||....+.+.
T Consensus 270 ~~~~~~~~~~~~~~~~~~ 287 (307)
T PRK11805 270 LEEAYPDVPFTWLEFENG 287 (307)
T ss_pred HHHHHhhCCCEEEEecCC
Confidence 999999999877666554
|
|
| >PF13649 Methyltransf_25: Methyltransferase domain; PDB: 3BXO_B 3GGD_A 3PX2_A 3PX3_A 3PFH_D 3PFG_A 1Y8C_A | Back alignment and domain information |
|---|
Probab=96.47 E-value=0.0083 Score=43.29 Aligned_cols=68 Identities=13% Similarity=0.267 Sum_probs=51.4
Q ss_pred CCceEEEeec-hhhhhhhcc-----CCCceEEecCCCCCCC----CcceEeccccchhhhHHhhhhhhhhcCCCccchhh
Q 036440 38 PCVKCTEFDQ-PHVVANLLD-----TNNLKYLADDFFQSIP----PVCMIPLRLGYSHIKIMIAFFIRLVVGRGRLHIFS 107 (181)
Q Consensus 38 P~l~~~~~Dl-P~Vv~~a~~-----~~ri~~~~gDff~~~P----~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 107 (181)
|..+.+.+|+ |..++.+.. ..+++++..|+-+ +| ..|++
T Consensus 23 ~~~~~~gvD~s~~~l~~~~~~~~~~~~~~~~~~~D~~~-l~~~~~~~D~v------------------------------ 71 (101)
T PF13649_consen 23 PSSRVIGVDISPEMLELAKKRFSEDGPKVRFVQADARD-LPFSDGKFDLV------------------------------ 71 (101)
T ss_dssp --SEEEEEES-HHHHHHHHHHSHHTTTTSEEEESCTTC-HHHHSSSEEEE------------------------------
T ss_pred ccceEEEEECCHHHHHHHHHhchhcCCceEEEECCHhH-CcccCCCeeEE------------------------------
Confidence 6689999997 556665542 3589999999965 33 35777
Q ss_pred hhhccccccee-eeeeccCChHHHHHHHHHHHHHhccCC
Q 036440 108 WLNFMKRVINM-QIIIHVFGDEESVKILKICREAITSKA 145 (181)
Q Consensus 108 ~~~~~~~~~~l-~~iLHdw~D~~~~~iL~~~~~a~~~~g 145 (181)
+. ...+|.+++++..++|+++.+.++|||
T Consensus 72 ---------~~~~~~~~~~~~~~~~~ll~~~~~~l~pgG 101 (101)
T PF13649_consen 72 ---------VCSGLSLHHLSPEELEALLRRIARLLRPGG 101 (101)
T ss_dssp ---------EE-TTGGGGSSHHHHHHHHHHHHHTEEEEE
T ss_pred ---------EEcCCccCCCCHHHHHHHHHHHHHHhCCCC
Confidence 55 344788999999999999999999986
|
|
| >COG4106 Tam Trans-aconitate methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.43 E-value=0.011 Score=51.60 Aligned_cols=149 Identities=16% Similarity=0.199 Sum_probs=102.9
Q ss_pred hHHHHHHhhhhhcCCCeEEEec------------CCCCceEEEeec-hhhhhhhc-cCCCceEEecCCCCCCCC--cceE
Q 036440 14 ASLALKYCKQIFERLGSLVDVG------------AFPCVKCTEFDQ-PHVVANLL-DTNNLKYLADDFFQSIPP--VCMI 77 (181)
Q Consensus 14 ~~~~l~~~~~d~~~~~~lvDvG------------~~P~l~~~~~Dl-P~Vv~~a~-~~~ri~~~~gDff~~~P~--~d~~ 77 (181)
|..++... .......++|+| +||....+.+|- |..++.|. .-+++++..+|.-+-.|. .|++
T Consensus 19 a~dLla~V--p~~~~~~v~DLGCGpGnsTelL~~RwP~A~i~GiDsS~~Mla~Aa~rlp~~~f~~aDl~~w~p~~~~dll 96 (257)
T COG4106 19 ARDLLARV--PLERPRRVVDLGCGPGNSTELLARRWPDAVITGIDSSPAMLAKAAQRLPDATFEEADLRTWKPEQPTDLL 96 (257)
T ss_pred HHHHHhhC--CccccceeeecCCCCCHHHHHHHHhCCCCeEeeccCCHHHHHHHHHhCCCCceecccHhhcCCCCccchh
Confidence 46777887 588889999999 999999999996 67777775 478999999999876664 5665
Q ss_pred eccccch----hhhHHhhhhhhhhcCCCccchhhhhhcccccceeeeeeccCChHHHHHHHHHHHHH------hccCC--
Q 036440 78 PLRLGYS----HIKIMIAFFIRLVVGRGRLHIFSWLNFMKRVINMQIIIHVFGDEESVKILKICREA------ITSKA-- 145 (181)
Q Consensus 78 ~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~iLHdw~D~~~~~iL~~~~~a------~~~~g-- 145 (181)
-.+.-+- |..+---+...+.+|+ .|..-+=|+-|+-.-.+++...+. +...|
T Consensus 97 faNAvlqWlpdH~~ll~rL~~~L~Pgg----------------~LAVQmPdN~depsH~~mr~~A~~~p~~~~l~~~~~~ 160 (257)
T COG4106 97 FANAVLQWLPDHPELLPRLVSQLAPGG----------------VLAVQMPDNLDEPSHRLMRETADEAPFAQELGGRGLT 160 (257)
T ss_pred hhhhhhhhccccHHHHHHHHHhhCCCc----------------eEEEECCCccCchhHHHHHHHHhcCchhhhhCccccc
Confidence 2222221 3333333355567777 777777788888888887777642 22212
Q ss_pred --ccCCHHHHHHHHHhCCCeE-----EEEEEcCCCCeEEEEE
Q 036440 146 --KLSTEKELESLFVEVHFHH-----YKITPLFGLPSLIEVY 180 (181)
Q Consensus 146 --~eRt~~E~~~Ll~~aGf~~-----~~i~~~~~~~~viE~~ 180 (181)
..-|...|-++|...+=++ +--++++|...+||-.
T Consensus 161 r~~v~s~a~Yy~lLa~~~~rvDiW~T~Y~h~l~~a~aIvdWv 202 (257)
T COG4106 161 RAPLPSPAAYYELLAPLACRVDIWHTTYYHQLPGADAIVDWV 202 (257)
T ss_pred cCCCCCHHHHHHHhCcccceeeeeeeeccccCCCccchhhhe
Confidence 5567889999998887543 1123667777888754
|
|
| >TIGR01983 UbiG ubiquinone biosynthesis O-methyltransferase | Back alignment and domain information |
|---|
Probab=96.37 E-value=0.029 Score=45.54 Aligned_cols=21 Identities=14% Similarity=0.131 Sum_probs=18.4
Q ss_pred CCHHHHHHHHHhCCCeEEEEE
Q 036440 148 STEKELESLFVEVHFHHYKIT 168 (181)
Q Consensus 148 Rt~~E~~~Ll~~aGf~~~~i~ 168 (181)
.|.+++.++++++||.++.+.
T Consensus 182 ~~~~~l~~~l~~~G~~i~~~~ 202 (224)
T TIGR01983 182 IKPSELTSWLESAGLRVKDVK 202 (224)
T ss_pred CCHHHHHHHHHHcCCeeeeee
Confidence 477899999999999998775
|
This model represents an O-methyltransferase believed to act at two points in the ubiquinone biosynthetic pathway in bacteria (UbiG) and fungi (COQ3). A separate methylase (MenG/UbiE) catalyzes the single C-methylation step. The most commonly used names for genes in this family do not indicate whether this gene is an O-methyl, or C-methyl transferase. |
| >TIGR03587 Pse_Me-ase pseudaminic acid biosynthesis-associated methylase | Back alignment and domain information |
|---|
Probab=96.35 E-value=0.029 Score=46.60 Aligned_cols=78 Identities=8% Similarity=0.158 Sum_probs=62.4
Q ss_pred cCCCeEEEec------------CCCCceEEEeec-hhhhhhhcc-CCCceEEecCCCCCCCC--cceEeccccchhhhHH
Q 036440 26 ERLGSLVDVG------------AFPCVKCTEFDQ-PHVVANLLD-TNNLKYLADDFFQSIPP--VCMIPLRLGYSHIKIM 89 (181)
Q Consensus 26 ~~~~~lvDvG------------~~P~l~~~~~Dl-P~Vv~~a~~-~~ri~~~~gDff~~~P~--~d~~~~~~~~~~~~~~ 89 (181)
....+|+|+| .+|..+.+.+|+ |..++.+.. .+++++..+|++++.|. .|++
T Consensus 42 ~~~~~VLDiGCG~G~~~~~L~~~~~~~~v~giDiS~~~l~~A~~~~~~~~~~~~d~~~~~~~~sfD~V------------ 109 (204)
T TIGR03587 42 PKIASILELGANIGMNLAALKRLLPFKHIYGVEINEYAVEKAKAYLPNINIIQGSLFDPFKDNFFDLV------------ 109 (204)
T ss_pred CCCCcEEEEecCCCHHHHHHHHhCCCCeEEEEECCHHHHHHHHhhCCCCcEEEeeccCCCCCCCEEEE------------
Confidence 4557899999 458899999997 567777754 46788999999886554 5888
Q ss_pred hhhhhhhhcCCCccchhhhhhcccccceeeeeeccCChHHHHHHHHHHHHHhc
Q 036440 90 IAFFIRLVVGRGRLHIFSWLNFMKRVINMQIIIHVFGDEESVKILKICREAIT 142 (181)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~iLHdw~D~~~~~iL~~~~~a~~ 142 (181)
+...+||.+++++..+.++++.....
T Consensus 110 ---------------------------~~~~vL~hl~p~~~~~~l~el~r~~~ 135 (204)
T TIGR03587 110 ---------------------------LTKGVLIHINPDNLPTAYRELYRCSN 135 (204)
T ss_pred ---------------------------EECChhhhCCHHHHHHHHHHHHhhcC
Confidence 88888888888888899999988763
|
Members of this small clade are methyltransferases of the pfam08241 family and are observed within operons for the biosynthesis of pseudaminic acid, a component of exopolysaccharide and flagellin glycosyl modifications. Notable among these genomes is Pseudomonas fluorescens PfO-1. Possibly one of the two hydroxyl groups of pseudaminic acid, at positions 4 and 8 is converted to a methoxy group by this enzyme |
| >TIGR00536 hemK_fam HemK family putative methylases | Back alignment and domain information |
|---|
Probab=96.31 E-value=0.11 Score=44.84 Aligned_cols=125 Identities=13% Similarity=0.216 Sum_probs=79.3
Q ss_pred CeEEEec------------CCCCceEEEeec-hhhhhhhc-------cCCCceEEecCCCCCCCC--cceEeccccchhh
Q 036440 29 GSLVDVG------------AFPCVKCTEFDQ-PHVVANLL-------DTNNLKYLADDFFQSIPP--VCMIPLRLGYSHI 86 (181)
Q Consensus 29 ~~lvDvG------------~~P~l~~~~~Dl-P~Vv~~a~-------~~~ri~~~~gDff~~~P~--~d~~~~~~~~~~~ 86 (181)
.+++|+| .+|+.+++.+|. |..++.+. ..+|++++.+|+++.+|. .|++..+-=|--.
T Consensus 116 ~~vLDlG~GsG~i~l~la~~~~~~~v~avDis~~al~~a~~n~~~~~~~~~v~~~~~d~~~~~~~~~fDlIvsNPPyi~~ 195 (284)
T TIGR00536 116 LHILDLGTGSGCIALALAYEFPNAEVIAVDISPDALAVAEENAEKNQLEHRVEFIQSNLFEPLAGQKIDIIVSNPPYIDE 195 (284)
T ss_pred CEEEEEeccHhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECchhccCcCCCccEEEECCCCCCc
Confidence 5899999 679999999998 55665443 245799999999988764 5777333221000
Q ss_pred hHHhhhhhhhhcCCCccchhhhhhcccccceeeeeeccCC----------hHHHHHHHHHHHHHhccCC------ccCCH
Q 036440 87 KIMIAFFIRLVVGRGRLHIFSWLNFMKRVINMQIIIHVFG----------DEESVKILKICREAITSKA------KLSTE 150 (181)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~iLHdw~----------D~~~~~iL~~~~~a~~~~g------~eRt~ 150 (181)
.-+. .+..+++.-+ -+.-.+|++.+...++||| -..-.
T Consensus 196 ~~~~--------------------------~~~~~~~~eP~~AL~gg~dgl~~~~~ii~~a~~~L~~gG~l~~e~g~~q~ 249 (284)
T TIGR00536 196 EDLA--------------------------DLPNVVRFEPLLALVGGDDGLNILRQIIELAPDYLKPNGFLVCEIGNWQQ 249 (284)
T ss_pred chhh--------------------------cCCcccccCcHHHhcCCCcHHHHHHHHHHHHHHhccCCCEEEEEECccHH
Confidence 0000 1122222111 1245688999999999999 33445
Q ss_pred HHHHHHHH-hCCCeEEEEEE-cCCCCeEEEE
Q 036440 151 KELESLFV-EVHFHHYKITP-LFGLPSLIEV 179 (181)
Q Consensus 151 ~E~~~Ll~-~aGf~~~~i~~-~~~~~~viE~ 179 (181)
++..+++. +.||..+++.. ..|..-++-+
T Consensus 250 ~~~~~~~~~~~~~~~~~~~~D~~g~~R~~~~ 280 (284)
T TIGR00536 250 KSLKELLRIKFTWYDVENGRDLNGKERVVLG 280 (284)
T ss_pred HHHHHHHHhcCCCceeEEecCCCCCceEEEE
Confidence 67888888 57998877764 4555544433
|
The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. Both E. coli and H. influenzae have two members rather than one. The members from the Mycoplasmas have an additional C-terminal domain. |
| >PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=96.25 E-value=0.043 Score=44.63 Aligned_cols=100 Identities=18% Similarity=0.169 Sum_probs=68.8
Q ss_pred hhcCCCeEEEec-------------CCCCceEEEeec-hhhhhhhc-------cCCCceEEecCCCCCCC----CcceEe
Q 036440 24 IFERLGSLVDVG-------------AFPCVKCTEFDQ-PHVVANLL-------DTNNLKYLADDFFQSIP----PVCMIP 78 (181)
Q Consensus 24 d~~~~~~lvDvG-------------~~P~l~~~~~Dl-P~Vv~~a~-------~~~ri~~~~gDff~~~P----~~d~~~ 78 (181)
+...-..++|+| ..|..+.+.+|. |..++.+. ..++++++.+|+.+.+| ..|.+
T Consensus 37 ~~~~~~~vlDlG~GtG~~s~~~a~~~~~~~~v~avD~~~~~~~~a~~n~~~~g~~~~v~~~~~d~~~~l~~~~~~~D~V- 115 (198)
T PRK00377 37 RLRKGDMILDIGCGTGSVTVEASLLVGETGKVYAVDKDEKAINLTRRNAEKFGVLNNIVLIKGEAPEILFTINEKFDRI- 115 (198)
T ss_pred CCCCcCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHhCCCCCeEEEEechhhhHhhcCCCCCEE-
Confidence 455567999999 246678999998 66666442 14688999999865322 25666
Q ss_pred ccccchhhhHHhhhhhhhhcCCCccchhhhhhcccccceeeeeeccCChHHHHHHHHHHHHHhccCCc-------cCCHH
Q 036440 79 LRLGYSHIKIMIAFFIRLVVGRGRLHIFSWLNFMKRVINMQIIIHVFGDEESVKILKICREAITSKAK-------LSTEK 151 (181)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~iLHdw~D~~~~~iL~~~~~a~~~~g~-------eRt~~ 151 (181)
++. .+.++...+|+.+...++|+|+ .-+.+
T Consensus 116 --------------------------------------~~~-----~~~~~~~~~l~~~~~~LkpgG~lv~~~~~~~~~~ 152 (198)
T PRK00377 116 --------------------------------------FIG-----GGSEKLKEIISASWEIIKKGGRIVIDAILLETVN 152 (198)
T ss_pred --------------------------------------EEC-----CCcccHHHHHHHHHHHcCCCcEEEEEeecHHHHH
Confidence 321 2334556789999999999993 33447
Q ss_pred HHHHHHHhCCCeEEEEE
Q 036440 152 ELESLFVEVHFHHYKIT 168 (181)
Q Consensus 152 E~~~Ll~~aGf~~~~i~ 168 (181)
+...+|++.||. +++.
T Consensus 153 ~~~~~l~~~g~~-~~~~ 168 (198)
T PRK00377 153 NALSALENIGFN-LEIT 168 (198)
T ss_pred HHHHHHHHcCCC-eEEE
Confidence 788888999994 4443
|
|
| >PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=96.22 E-value=0.072 Score=50.23 Aligned_cols=126 Identities=13% Similarity=0.178 Sum_probs=81.1
Q ss_pred CeEEEec------------CCCCceEEEeec-hhhhhhhc-------cCCCceEEecCCCCCCCC--cceEeccccchhh
Q 036440 29 GSLVDVG------------AFPCVKCTEFDQ-PHVVANLL-------DTNNLKYLADDFFQSIPP--VCMIPLRLGYSHI 86 (181)
Q Consensus 29 ~~lvDvG------------~~P~l~~~~~Dl-P~Vv~~a~-------~~~ri~~~~gDff~~~P~--~d~~~~~~~~~~~ 86 (181)
.+++|+| .+|+.+.+.+|. |..++.+. ..++++++.+|+++.++. .|++..+-=|...
T Consensus 140 ~~VLDlG~GsG~iai~la~~~p~~~v~avDis~~al~~A~~N~~~~~l~~~v~~~~~D~~~~~~~~~fDlIvsNPPYi~~ 219 (506)
T PRK01544 140 LNILELGTGSGCIAISLLCELPNANVIATDISLDAIEVAKSNAIKYEVTDRIQIIHSNWFENIEKQKFDFIVSNPPYISH 219 (506)
T ss_pred CEEEEccCchhHHHHHHHHHCCCCeEEEEECCHHHHHHHHHHHHHcCCccceeeeecchhhhCcCCCccEEEECCCCCCc
Confidence 5899999 679999999998 56666553 246899999999987754 5777333221100
Q ss_pred hHHhhhhhhhhcCCCccchhhhhhcccccceeeeee-c-------cCCh--HHHHHHHHHHHHHhccCC------ccCCH
Q 036440 87 KIMIAFFIRLVVGRGRLHIFSWLNFMKRVINMQIII-H-------VFGD--EESVKILKICREAITSKA------KLSTE 150 (181)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~iL-H-------dw~D--~~~~~iL~~~~~a~~~~g------~eRt~ 150 (181)
.-.- -+...++ | .-.| +--.+|++.+...++|+| -....
T Consensus 220 ~~~~-------------------------~l~~~v~~~EP~~AL~gg~dGl~~~~~il~~a~~~L~~gG~l~lEig~~q~ 274 (506)
T PRK01544 220 SEKS-------------------------EMAIETINYEPSIALFAEEDGLQAYFIIAENAKQFLKPNGKIILEIGFKQE 274 (506)
T ss_pred hhhh-------------------------hcCchhhccCcHHHhcCCccHHHHHHHHHHHHHHhccCCCEEEEEECCchH
Confidence 0000 0011111 0 1111 123468888899999999 44567
Q ss_pred HHHHHHHHhCCCeEEEEEE-cCCCCeEEEE
Q 036440 151 KELESLFVEVHFHHYKITP-LFGLPSLIEV 179 (181)
Q Consensus 151 ~E~~~Ll~~aGf~~~~i~~-~~~~~~viE~ 179 (181)
++...++.+.||..+++.. ..|..-++-+
T Consensus 275 ~~v~~~~~~~g~~~~~~~~D~~g~~R~v~~ 304 (506)
T PRK01544 275 EAVTQIFLDHGYNIESVYKDLQGHSRVILI 304 (506)
T ss_pred HHHHHHHHhcCCCceEEEecCCCCceEEEe
Confidence 7889999999999887765 5565555543
|
|
| >PF04672 Methyltransf_19: S-adenosyl methyltransferase; InterPro: IPR006764 This is a family of uncharacterised proteins | Back alignment and domain information |
|---|
Probab=96.20 E-value=0.0095 Score=52.56 Aligned_cols=106 Identities=19% Similarity=0.385 Sum_probs=62.0
Q ss_pred CCCeEEEec---------------CCCCceEEEeec-hhhhhhhc----cCCC--ceEEecCCCCC---C--CCc-ceEe
Q 036440 27 RLGSLVDVG---------------AFPCVKCTEFDQ-PHVVANLL----DTNN--LKYLADDFFQS---I--PPV-CMIP 78 (181)
Q Consensus 27 ~~~~lvDvG---------------~~P~l~~~~~Dl-P~Vv~~a~----~~~r--i~~~~gDff~~---~--P~~-d~~~ 78 (181)
+++..||+| ..|+.+.+=.|. |-|++.+. .+++ ..++.+|+.++ + |.. ..+
T Consensus 68 GIrQFLDlGsGlPT~~nvHevAq~~~P~aRVVYVD~DPvv~ah~ralL~~~~~g~t~~v~aD~r~p~~iL~~p~~~~~l- 146 (267)
T PF04672_consen 68 GIRQFLDLGSGLPTAGNVHEVAQRVAPDARVVYVDNDPVVLAHARALLADNPRGRTAYVQADLRDPEAILAHPEVRGLL- 146 (267)
T ss_dssp ---EEEEET--S--SS-HHHHHHHH-TT-EEEEEESSHHHHHCCHHHHTT-TTSEEEEEE--TT-HHHHHCSHHHHCC--
T ss_pred CcceEEEcccCCCCCCCHhHHHHhhCCCceEEEECCCchHHHHHHhhhcCCCCccEEEEeCCCCCHHHHhcCHHHHhcC-
Confidence 778999999 689999999998 55555443 2444 89999999974 1 111 111
Q ss_pred ccccchhhhHHhhhhhhhhcCCCccchhhhhhcccccceeeeeeccCCh-HHHHHHHHHHHHHhccCC------------
Q 036440 79 LRLGYSHIKIMIAFFIRLVVGRGRLHIFSWLNFMKRVINMQIIIHVFGD-EESVKILKICREAITSKA------------ 145 (181)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~iLHdw~D-~~~~~iL~~~~~a~~~~g------------ 145 (181)
++ ..+. .++|--|||-.+| ++...|++..+.+++||+
T Consensus 147 -D~-------------~rPV----------------avll~~vLh~v~D~~dp~~iv~~l~d~lapGS~L~ish~t~d~~ 196 (267)
T PF04672_consen 147 -DF-------------DRPV----------------AVLLVAVLHFVPDDDDPAGIVARLRDALAPGSYLAISHATDDGA 196 (267)
T ss_dssp --T-------------TS------------------EEEECT-GGGS-CGCTHHHHHHHHHCCS-TT-EEEEEEEB-TTS
T ss_pred -CC-------------CCCe----------------eeeeeeeeccCCCccCHHHHHHHHHHhCCCCceEEEEecCCCCC
Confidence 10 0111 2377888888877 677789999999999988
Q ss_pred ------------------ccCCHHHHHHHHHhCCCeEE
Q 036440 146 ------------------KLSTEKELESLFVEVHFHHY 165 (181)
Q Consensus 146 ------------------~eRt~~E~~~Ll~~aGf~~~ 165 (181)
..||.+|..++|. ||.++
T Consensus 197 p~~~~~~~~~~~~~~~~~~~Rs~~ei~~~f~--g~elv 232 (267)
T PF04672_consen 197 PERAEALEAVYAQAGSPGRPRSREEIAAFFD--GLELV 232 (267)
T ss_dssp HHHHHHHHHHHHHCCS----B-HHHHHHCCT--TSEE-
T ss_pred HHHHHHHHHHHHcCCCCceecCHHHHHHHcC--CCccC
Confidence 7889999999987 77765
|
; PDB: 3GIW_A 3GO4_A 2QE6_A. |
| >COG3315 O-Methyltransferase involved in polyketide biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Probab=96.20 E-value=0.047 Score=48.39 Aligned_cols=113 Identities=14% Similarity=0.150 Sum_probs=80.8
Q ss_pred CCCeEEEec----------CCCC-ceEEEeechhhhhhhc---------cCCCceEEecCCC-CCCCCcceEeccccchh
Q 036440 27 RLGSLVDVG----------AFPC-VKCTEFDQPHVVANLL---------DTNNLKYLADDFF-QSIPPVCMIPLRLGYSH 85 (181)
Q Consensus 27 ~~~~lvDvG----------~~P~-l~~~~~DlP~Vv~~a~---------~~~ri~~~~gDff-~~~P~~d~~~~~~~~~~ 85 (181)
..+.||=+| ..|. ++.-.+|+|+|++.-. ...+.++++.|++ +++|.+-. ..||
T Consensus 92 g~~qvViLgaGLDTRayRl~~~~~~~vfEvD~Pevi~~K~~~l~e~~~~~~~~~~~Va~Dl~~~dw~~~L~---~~G~-- 166 (297)
T COG3315 92 GIRQVVILGAGLDTRAYRLDWPKGTRVFEVDLPEVIEFKKKLLAERGATPPAHRRLVAVDLREDDWPQALA---AAGF-- 166 (297)
T ss_pred cccEEEEeccccccceeecCCCCCCeEEECCCcHHHHHHHHHhhhcCCCCCceEEEEeccccccchHHHHH---hcCC--
Confidence 368899998 5553 7788899999998432 2449999999999 55665210 0111
Q ss_pred hhHHhhhhhhhhcCCCccchhhhhhcccccceeeeeeccCChHHHHHHHHHHHHHhccCC--------------------
Q 036440 86 IKIMIAFFIRLVVGRGRLHIFSWLNFMKRVINMQIIIHVFGDEESVKILKICREAITSKA-------------------- 145 (181)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~iLHdw~D~~~~~iL~~~~~a~~~~g-------------------- 145 (181)
.+.-+..+++..+|-.++.++..++|.++....++|.
T Consensus 167 -----------------------d~~~pt~~iaEGLl~YL~~~~v~~ll~~I~~~~~~gS~~~~~~~~~~~~~~~~~~~~ 223 (297)
T COG3315 167 -----------------------DRSRPTLWIAEGLLMYLPEEAVDRLLSRIAALSAPGSRVAFDYSLPGSLRDRLRRPA 223 (297)
T ss_pred -----------------------CcCCCeEEEeccccccCCHHHHHHHHHHHHHhCCCCceEEEeccccHHHHhcccchh
Confidence 0112234477888888899999999999988888777
Q ss_pred -----------------ccCCHHHHHHHHHhCCCeEEEE
Q 036440 146 -----------------KLSTEKELESLFVEVHFHHYKI 167 (181)
Q Consensus 146 -----------------~eRt~~E~~~Ll~~aGf~~~~i 167 (181)
-.....|++.++.+.||..+..
T Consensus 224 ~~~~~~~~~~~~~e~~~~~~~~~e~~~~l~~~g~~~~~~ 262 (297)
T COG3315 224 ARKTMRGEDLDRGELVYFGDDPAEIETWLAERGWRSTLN 262 (297)
T ss_pred hhhhccccccccccceeccCCHHHHHHHHHhcCEEEEec
Confidence 2245789999999999987665
|
|
| >TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit | Back alignment and domain information |
|---|
Probab=96.19 E-value=0.048 Score=39.46 Aligned_cols=85 Identities=13% Similarity=0.125 Sum_probs=57.3
Q ss_pred HHHHHhhhhhcCCCeEEEec------------CCCCceEEEeec-hhhhhhhcc------CCCceEEecCCCCCC---C-
Q 036440 16 LALKYCKQIFERLGSLVDVG------------AFPCVKCTEFDQ-PHVVANLLD------TNNLKYLADDFFQSI---P- 72 (181)
Q Consensus 16 ~~l~~~~~d~~~~~~lvDvG------------~~P~l~~~~~Dl-P~Vv~~a~~------~~ri~~~~gDff~~~---P- 72 (181)
.+++.+ +...-.+++|+| ++|+.+.+.+|. |..++.+.. .++++++.+|..+.. +
T Consensus 10 ~~~~~~--~~~~~~~vldlG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (124)
T TIGR02469 10 LTLSKL--RLRPGDVLWDIGAGSGSITIEAARLVPNGRVYAIERNPEALRLIERNARRFGVSNIVIVEGDAPEALEDSLP 87 (124)
T ss_pred HHHHHc--CCCCCCEEEEeCCCCCHHHHHHHHHCCCceEEEEcCCHHHHHHHHHHHHHhCCCceEEEeccccccChhhcC
Confidence 455555 455567999999 678889999998 455544321 357888888865322 2
Q ss_pred CcceEeccccchhhhHHhhhhhhhhcCCCccchhhhhhcccccceeeeeeccCChHHHHHHHHHHHHHhccCCc
Q 036440 73 PVCMIPLRLGYSHIKIMIAFFIRLVVGRGRLHIFSWLNFMKRVINMQIIIHVFGDEESVKILKICREAITSKAK 146 (181)
Q Consensus 73 ~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~iLHdw~D~~~~~iL~~~~~a~~~~g~ 146 (181)
..|.+ ++. ...+...++++.+.+.++|+|.
T Consensus 88 ~~D~v---------------------------------------~~~-----~~~~~~~~~l~~~~~~Lk~gG~ 117 (124)
T TIGR02469 88 EPDRV---------------------------------------FIG-----GSGGLLQEILEAIWRRLRPGGR 117 (124)
T ss_pred CCCEE---------------------------------------EEC-----CcchhHHHHHHHHHHHcCCCCE
Confidence 25666 332 2333445899999999999984
|
This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL. |
| >PRK14966 unknown domain/N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase fusion protein; Provisional | Back alignment and domain information |
|---|
Probab=96.17 E-value=0.19 Score=47.10 Aligned_cols=147 Identities=14% Similarity=0.166 Sum_probs=85.1
Q ss_pred HHHHHHhhhhhcCCCeEEEec------------CCCCceEEEeec-hhhhhhhcc-----CCCceEEecCCCCC-CCC--
Q 036440 15 SLALKYCKQIFERLGSLVDVG------------AFPCVKCTEFDQ-PHVVANLLD-----TNNLKYLADDFFQS-IPP-- 73 (181)
Q Consensus 15 ~~~l~~~~~d~~~~~~lvDvG------------~~P~l~~~~~Dl-P~Vv~~a~~-----~~ri~~~~gDff~~-~P~-- 73 (181)
..+++..-..++.-.+++|+| .+|..+.+.+|. |..++.+.. ..+++++.+|+++. .|.
T Consensus 239 E~LVe~aL~~l~~~~rVLDLGcGSG~IaiaLA~~~p~a~VtAVDiS~~ALe~AreNa~~~g~rV~fi~gDl~e~~l~~~~ 318 (423)
T PRK14966 239 EHLVEAVLARLPENGRVWDLGTGSGAVAVTVALERPDAFVRASDISPPALETARKNAADLGARVEFAHGSWFDTDMPSEG 318 (423)
T ss_pred HHHHHHhhhccCCCCEEEEEeChhhHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCcEEEEEcchhccccccCC
Confidence 344443321233446899999 589999999999 777765542 45899999999875 332
Q ss_pred -cceEeccccchhhhHHhhhhhhhhcCCCccchhhhhhcccccceeeeeeccCCh--HHHHHHHHHHHHHhccCC-----
Q 036440 74 -VCMIPLRLGYSHIKIMIAFFIRLVVGRGRLHIFSWLNFMKRVINMQIIIHVFGD--EESVKILKICREAITSKA----- 145 (181)
Q Consensus 74 -~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~iLHdw~D--~~~~~iL~~~~~a~~~~g----- 145 (181)
.|++..+-=|....- .. -.....+|-.. .-|-...| +--.+|++.....++|+|
T Consensus 319 ~FDLIVSNPPYI~~~e-~~------------l~~~~v~~EP~-----~AL~gG~dGL~~yr~Ii~~a~~~LkpgG~lilE 380 (423)
T PRK14966 319 KWDIIVSNPPYIENGD-KH------------LLQGDLRFEPQ-----IALTDFSDGLSCIRTLAQGAPDRLAEGGFLLLE 380 (423)
T ss_pred CccEEEECCCCCCcch-hh------------hcchhhhcCHH-----HHhhCCCchHHHHHHHHHHHHHhcCCCcEEEEE
Confidence 477733332210000 00 00000000000 00101111 223478888888999999
Q ss_pred -ccCCHHHHHHHHHhCCCeEEEEEE-cCCCCeEEEE
Q 036440 146 -KLSTEKELESLFVEVHFHHYKITP-LFGLPSLIEV 179 (181)
Q Consensus 146 -~eRt~~E~~~Ll~~aGf~~~~i~~-~~~~~~viE~ 179 (181)
...-.++.++++++.||..+++.+ ..|.+-++-+
T Consensus 381 iG~~Q~e~V~~ll~~~Gf~~v~v~kDl~G~dR~v~~ 416 (423)
T PRK14966 381 HGFDQGAAVRGVLAENGFSGVETLPDLAGLDRVTLG 416 (423)
T ss_pred ECccHHHHHHHHHHHCCCcEEEEEEcCCCCcEEEEE
Confidence 344467899999999999888765 4565655543
|
|
| >PRK13255 thiopurine S-methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=96.14 E-value=0.078 Score=44.64 Aligned_cols=114 Identities=12% Similarity=0.153 Sum_probs=81.0
Q ss_pred HHHHHHhhh-hhcCCCeEEEec----------CCCCceEEEeechhh-hhhhc------------------cCCCceEEe
Q 036440 15 SLALKYCKQ-IFERLGSLVDVG----------AFPCVKCTEFDQPHV-VANLL------------------DTNNLKYLA 64 (181)
Q Consensus 15 ~~~l~~~~~-d~~~~~~lvDvG----------~~P~l~~~~~DlP~V-v~~a~------------------~~~ri~~~~ 64 (181)
+.+.+.+.. .+..-.+++|+| +--+.+.+.+|+-.+ ++.+. ...+|++..
T Consensus 24 ~~L~~~~~~~~~~~~~rvL~~gCG~G~da~~LA~~G~~V~avD~s~~Ai~~~~~~~~l~~~~~~~~~~~~~~~~~v~~~~ 103 (218)
T PRK13255 24 PLLQKYWPALALPAGSRVLVPLCGKSLDMLWLAEQGHEVLGVELSELAVEQFFAENGLTPQTRQSGEFEHYQAGEITIYC 103 (218)
T ss_pred HHHHHHHHhhCCCCCCeEEEeCCCChHhHHHHHhCCCeEEEEccCHHHHHHHHHHcCCCccccccccccccccCceEEEE
Confidence 444554421 122346999999 445778999998654 33221 146899999
Q ss_pred cCCCCCCC----CcceEeccccchhhhHHhhhhhhhhcCCCccchhhhhhcccccceeeeeeccCChHHHHHHHHHHHHH
Q 036440 65 DDFFQSIP----PVCMIPLRLGYSHIKIMIAFFIRLVVGRGRLHIFSWLNFMKRVINMQIIIHVFGDEESVKILKICREA 140 (181)
Q Consensus 65 gDff~~~P----~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~iLHdw~D~~~~~iL~~~~~a 140 (181)
+|+|+..| ..|.+ +=+.++|-.+.+...+.++++.++
T Consensus 104 ~D~~~l~~~~~~~fd~v---------------------------------------~D~~~~~~l~~~~R~~~~~~l~~l 144 (218)
T PRK13255 104 GDFFALTAADLADVDAV---------------------------------------YDRAALIALPEEMRERYVQQLAAL 144 (218)
T ss_pred CcccCCCcccCCCeeEE---------------------------------------EehHhHhhCCHHHHHHHHHHHHHH
Confidence 99997533 23666 666777888999999999999999
Q ss_pred hccCC------------------ccCCHHHHHHHHHhCCCeEEEEE
Q 036440 141 ITSKA------------------KLSTEKELESLFVEVHFHHYKIT 168 (181)
Q Consensus 141 ~~~~g------------------~eRt~~E~~~Ll~~aGf~~~~i~ 168 (181)
++||| ...|.+|+++++.. +|.+..+.
T Consensus 145 L~pgG~~~l~~~~~~~~~~~gPp~~~~~~el~~~~~~-~~~i~~~~ 189 (218)
T PRK13255 145 LPAGCRGLLVTLDYPQEELAGPPFSVSDEEVEALYAG-CFEIELLE 189 (218)
T ss_pred cCCCCeEEEEEEEeCCccCCCCCCCCCHHHHHHHhcC-CceEEEee
Confidence 99997 35789999999963 36665554
|
|
| >TIGR03533 L3_gln_methyl protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific | Back alignment and domain information |
|---|
Probab=96.13 E-value=0.081 Score=46.04 Aligned_cols=116 Identities=18% Similarity=0.237 Sum_probs=75.0
Q ss_pred CCCeEEEec------------CCCCceEEEeec-hhhhhhhcc-------CCCceEEecCCCCCCCC--cceEeccccch
Q 036440 27 RLGSLVDVG------------AFPCVKCTEFDQ-PHVVANLLD-------TNNLKYLADDFFQSIPP--VCMIPLRLGYS 84 (181)
Q Consensus 27 ~~~~lvDvG------------~~P~l~~~~~Dl-P~Vv~~a~~-------~~ri~~~~gDff~~~P~--~d~~~~~~~~~ 84 (181)
...+++|+| .+|..+.+.+|. |..++.+.. .++|+++.+|+++.+|. .|++..+-=|.
T Consensus 121 ~~~~vLDlG~GsG~i~~~la~~~~~~~v~avDis~~al~~A~~n~~~~~~~~~i~~~~~D~~~~~~~~~fD~Iv~NPPy~ 200 (284)
T TIGR03533 121 PVKRILDLCTGSGCIAIACAYAFPEAEVDAVDISPDALAVAEINIERHGLEDRVTLIQSDLFAALPGRKYDLIVSNPPYV 200 (284)
T ss_pred CCCEEEEEeCchhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECchhhccCCCCccEEEECCCCC
Confidence 346899999 689999999999 566665532 46899999999987764 58773332110
Q ss_pred hhhHHhhhhhhhhcCCCccchhhhhhcccccceeeeeeccC----------ChHHHHHHHHHHHHHhccCC-----ccCC
Q 036440 85 HIKIMIAFFIRLVVGRGRLHIFSWLNFMKRVINMQIIIHVF----------GDEESVKILKICREAITSKA-----KLST 149 (181)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~iLHdw----------~D~~~~~iL~~~~~a~~~~g-----~eRt 149 (181)
-..-.- -+...+ +.. +-+...+|++.+...++||| --.+
T Consensus 201 ~~~~~~-------------------------~l~~~~-~~ep~~al~gg~dGl~~~~~il~~a~~~L~~gG~l~~e~g~~ 254 (284)
T TIGR03533 201 DAEDMA-------------------------DLPAEY-HHEPELALASGEDGLDLVRRILAEAADHLNENGVLVVEVGNS 254 (284)
T ss_pred Cccchh-------------------------hCCHhh-hcCHHHHhcCCCcHHHHHHHHHHHHHHhcCCCCEEEEEECcC
Confidence 000000 001111 111 11234688999999999999 2236
Q ss_pred HHHHHHHHHhCCCeEEEEE
Q 036440 150 EKELESLFVEVHFHHYKIT 168 (181)
Q Consensus 150 ~~E~~~Ll~~aGf~~~~i~ 168 (181)
.++.+.++.++||.-..+.
T Consensus 255 ~~~v~~~~~~~~~~~~~~~ 273 (284)
T TIGR03533 255 MEALEEAYPDVPFTWLEFE 273 (284)
T ss_pred HHHHHHHHHhCCCceeeec
Confidence 6799999999999765443
|
Members of this protein family methylate ribosomal protein L3 on a glutamine side chain. This family is related to HemK, a protein-glutamine methyltranferase for peptide chain release factors. |
| >PRK05785 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=96.05 E-value=0.14 Score=42.97 Aligned_cols=33 Identities=15% Similarity=0.054 Sum_probs=23.4
Q ss_pred ccCCHHHHHHHHHhCCCeEEEEEEcC-CCCeEEEE
Q 036440 146 KLSTEKELESLFVEVHFHHYKITPLF-GLPSLIEV 179 (181)
Q Consensus 146 ~eRt~~E~~~Ll~~aGf~~~~i~~~~-~~~~viE~ 179 (181)
+-.+.+|++++|+++| +.++..++. |.-.+.-+
T Consensus 189 ~f~~~~~~~~~~~~~~-~~~~~~~~~~G~~~~~~~ 222 (226)
T PRK05785 189 RLPTNSFHREIFEKYA-DIKVYEERGLGLVYFVVG 222 (226)
T ss_pred HCCCHHHHHHHHHHHh-CceEEEEccccEEEEEEE
Confidence 6678899999999984 667777654 44444443
|
|
| >PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=95.99 E-value=0.16 Score=43.03 Aligned_cols=50 Identities=8% Similarity=0.024 Sum_probs=40.0
Q ss_pred HHHHHHHHHHHHHhccCC-------ccCCHHHHHHHHHhCCCeEEEEEEcCCCCeEE
Q 036440 128 EESVKILKICREAITSKA-------KLSTEKELESLFVEVHFHHYKITPLFGLPSLI 177 (181)
Q Consensus 128 ~~~~~iL~~~~~a~~~~g-------~eRt~~E~~~Ll~~aGf~~~~i~~~~~~~~vi 177 (181)
+....+++.+...++||| ..-..+++...+++.||+..++....+..+++
T Consensus 190 ~~~~~l~~~~~~~LkpgG~lilsgi~~~~~~~v~~~l~~~Gf~~~~~~~~~~W~~~~ 246 (250)
T PRK00517 190 NPLLELAPDLARLLKPGGRLILSGILEEQADEVLEAYEEAGFTLDEVLERGEWVALV 246 (250)
T ss_pred HHHHHHHHHHHHhcCCCcEEEEEECcHhhHHHHHHHHHHCCCEEEEEEEeCCEEEEE
Confidence 344578899999999999 44567789999999999999988877766554
|
|
| >PRK11705 cyclopropane fatty acyl phospholipid synthase; Provisional | Back alignment and domain information |
|---|
Probab=95.90 E-value=0.14 Score=46.70 Aligned_cols=106 Identities=8% Similarity=0.012 Sum_probs=69.6
Q ss_pred hhcCCCeEEEec-----------CCCCceEEEeec-hhhhhhhcc---CCCceEEecCCCCCCCCcceEeccccchhhhH
Q 036440 24 IFERLGSLVDVG-----------AFPCVKCTEFDQ-PHVVANLLD---TNNLKYLADDFFQSIPPVCMIPLRLGYSHIKI 88 (181)
Q Consensus 24 d~~~~~~lvDvG-----------~~P~l~~~~~Dl-P~Vv~~a~~---~~ri~~~~gDff~~~P~~d~~~~~~~~~~~~~ 88 (181)
+...-.+||||| +..+.+.+.+|+ |..++.+.. ...+++...|+.+.-...|.+
T Consensus 164 ~l~~g~rVLDIGcG~G~~a~~la~~~g~~V~giDlS~~~l~~A~~~~~~l~v~~~~~D~~~l~~~fD~I----------- 232 (383)
T PRK11705 164 QLKPGMRVLDIGCGWGGLARYAAEHYGVSVVGVTISAEQQKLAQERCAGLPVEIRLQDYRDLNGQFDRI----------- 232 (383)
T ss_pred CCCCCCEEEEeCCCccHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhccCeEEEEECchhhcCCCCCEE-----------
Confidence 455567999999 344678999998 555555542 224777777765421235776
Q ss_pred HhhhhhhhhcCCCccchhhhhhcccccceeeeeeccCChHHHHHHHHHHHHHhccCC-----------------------
Q 036440 89 MIAFFIRLVVGRGRLHIFSWLNFMKRVINMQIIIHVFGDEESVKILKICREAITSKA----------------------- 145 (181)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~iLHdw~D~~~~~iL~~~~~a~~~~g----------------------- 145 (181)
+...++|..++..-..+++.++..++|||
T Consensus 233 ----------------------------vs~~~~ehvg~~~~~~~l~~i~r~LkpGG~lvl~~i~~~~~~~~~~~~i~~y 284 (383)
T PRK11705 233 ----------------------------VSVGMFEHVGPKNYRTYFEVVRRCLKPDGLFLLHTIGSNKTDTNVDPWINKY 284 (383)
T ss_pred ----------------------------EEeCchhhCChHHHHHHHHHHHHHcCCCcEEEEEEccCCCCCCCCCCCceee
Confidence 44445555566655677777777887777
Q ss_pred -----ccCCHHHHHHHHHhCCCeEEEEEE
Q 036440 146 -----KLSTEKELESLFVEVHFHHYKITP 169 (181)
Q Consensus 146 -----~eRt~~E~~~Ll~~aGf~~~~i~~ 169 (181)
...+.+++...++ .||.+..+..
T Consensus 285 ifp~g~lps~~~i~~~~~-~~~~v~d~~~ 312 (383)
T PRK11705 285 IFPNGCLPSVRQIAQASE-GLFVMEDWHN 312 (383)
T ss_pred ecCCCcCCCHHHHHHHHH-CCcEEEEEec
Confidence 3457788888766 5888777654
|
|
| >PRK11188 rrmJ 23S rRNA methyltransferase J; Provisional | Back alignment and domain information |
|---|
Probab=95.85 E-value=0.14 Score=42.54 Aligned_cols=50 Identities=22% Similarity=0.385 Sum_probs=34.8
Q ss_pred HHHHHHHHHHhccCC----ccCCHHHHHHHHHhC--CCeEEEEE-EcCCCCeEEEEE
Q 036440 131 VKILKICREAITSKA----KLSTEKELESLFVEV--HFHHYKIT-PLFGLPSLIEVY 180 (181)
Q Consensus 131 ~~iL~~~~~a~~~~g----~eRt~~E~~~Ll~~a--Gf~~~~i~-~~~~~~~viE~~ 180 (181)
..+|+.+...++||| +....+++.+++++. +|..+++. |..+...=-|.|
T Consensus 145 ~~~L~~~~~~LkpGG~~vi~~~~~~~~~~~l~~l~~~f~~v~~~Kp~ssr~~s~e~~ 201 (209)
T PRK11188 145 ELALDMCRDVLAPGGSFVVKVFQGEGFDEYLREIRSLFTKVKVRKPDSSRARSREVY 201 (209)
T ss_pred HHHHHHHHHHcCCCCEEEEEEecCcCHHHHHHHHHhCceEEEEECCccccccCceeE
Confidence 468999999999999 444455666667775 89888876 555544434443
|
|
| >PRK00121 trmB tRNA (guanine-N(7)-)-methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=95.71 E-value=0.024 Score=46.57 Aligned_cols=100 Identities=13% Similarity=0.091 Sum_probs=67.4
Q ss_pred CCCeEEEec------------CCCCceEEEeec-hhhhhhhcc------CCCceEEecCCCCC----CCC--cceEeccc
Q 036440 27 RLGSLVDVG------------AFPCVKCTEFDQ-PHVVANLLD------TNNLKYLADDFFQS----IPP--VCMIPLRL 81 (181)
Q Consensus 27 ~~~~lvDvG------------~~P~l~~~~~Dl-P~Vv~~a~~------~~ri~~~~gDff~~----~P~--~d~~~~~~ 81 (181)
...+++|+| .+|+.+.+.+|. |+.++.+.. .++++++.+|+.+. ++. .|.+
T Consensus 40 ~~~~VLDiGcGtG~~~~~la~~~p~~~v~gVD~s~~~i~~a~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~D~V---- 115 (202)
T PRK00121 40 DAPIHLEIGFGKGEFLVEMAKANPDINFIGIEVHEPGVGKALKKIEEEGLTNLRLLCGDAVEVLLDMFPDGSLDRI---- 115 (202)
T ss_pred CCCeEEEEccCCCHHHHHHHHHCCCccEEEEEechHHHHHHHHHHHHcCCCCEEEEecCHHHHHHHHcCccccceE----
Confidence 457899999 679989999998 555654431 26799999998432 322 3555
Q ss_pred cchhhhHHhhhhhhhhcCCCccchhhhhhcccccceeeeee------ccCChHHHHHHHHHHHHHhccCC-------ccC
Q 036440 82 GYSHIKIMIAFFIRLVVGRGRLHIFSWLNFMKRVINMQIII------HVFGDEESVKILKICREAITSKA-------KLS 148 (181)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~iL------Hdw~D~~~~~iL~~~~~a~~~~g-------~eR 148 (181)
++.... |+-.......+|++++..++|+| ...
T Consensus 116 -----------------------------------~~~~~~p~~~~~~~~~~~~~~~~l~~i~~~LkpgG~l~i~~~~~~ 160 (202)
T PRK00121 116 -----------------------------------YLNFPDPWPKKRHHKRRLVQPEFLALYARKLKPGGEIHFATDWEG 160 (202)
T ss_pred -----------------------------------EEECCCCCCCccccccccCCHHHHHHHHHHcCCCCEEEEEcCCHH
Confidence 211111 11111234679999999999999 344
Q ss_pred CHHHHHHHHHhCCCeEE
Q 036440 149 TEKELESLFVEVHFHHY 165 (181)
Q Consensus 149 t~~E~~~Ll~~aGf~~~ 165 (181)
-.+++.+.+++.||...
T Consensus 161 ~~~~~~~~~~~~g~~~~ 177 (202)
T PRK00121 161 YAEYMLEVLSAEGGFLV 177 (202)
T ss_pred HHHHHHHHHHhCccccc
Confidence 56678888899998765
|
|
| >PF05175 MTS: Methyltransferase small domain; InterPro: IPR007848 This domain is found in ribosomal RNA small subunit methyltransferase C and in other methyltransferases | Back alignment and domain information |
|---|
Probab=95.70 E-value=0.1 Score=41.64 Aligned_cols=90 Identities=21% Similarity=0.293 Sum_probs=63.3
Q ss_pred HHHHHHhhhhhcCCCeEEEec------------CCCCceEEEeec-hhhhhhhcc------CCCceEEecCCCCCCCC--
Q 036440 15 SLALKYCKQIFERLGSLVDVG------------AFPCVKCTEFDQ-PHVVANLLD------TNNLKYLADDFFQSIPP-- 73 (181)
Q Consensus 15 ~~~l~~~~~d~~~~~~lvDvG------------~~P~l~~~~~Dl-P~Vv~~a~~------~~ri~~~~gDff~~~P~-- 73 (181)
..+++.. .....++++|+| .+|+.+.+..|. |..++.+.. .+.++++..|+++.++.
T Consensus 21 ~lL~~~l--~~~~~~~vLDlG~G~G~i~~~la~~~~~~~v~~vDi~~~a~~~a~~n~~~n~~~~v~~~~~d~~~~~~~~~ 98 (170)
T PF05175_consen 21 RLLLDNL--PKHKGGRVLDLGCGSGVISLALAKRGPDAKVTAVDINPDALELAKRNAERNGLENVEVVQSDLFEALPDGK 98 (170)
T ss_dssp HHHHHHH--HHHTTCEEEEETSTTSHHHHHHHHTSTCEEEEEEESBHHHHHHHHHHHHHTTCTTEEEEESSTTTTCCTTC
T ss_pred HHHHHHH--hhccCCeEEEecCChHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHHhcCccccccccccccccccccc
Confidence 3455555 334778999999 899999999998 455554432 22399999999998873
Q ss_pred cceEeccccchhhhHHhhhhhhhhcCCCccchhhhhhcccccceeeeeeccCCh---HHHHHHHHHHHHHhccCC
Q 036440 74 VCMIPLRLGYSHIKIMIAFFIRLVVGRGRLHIFSWLNFMKRVINMQIIIHVFGD---EESVKILKICREAITSKA 145 (181)
Q Consensus 74 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~iLHdw~D---~~~~~iL~~~~~a~~~~g 145 (181)
.|++ +..-=+|.-.+ +-..++++.+...++|+|
T Consensus 99 fD~I---------------------------------------v~NPP~~~~~~~~~~~~~~~i~~a~~~Lk~~G 134 (170)
T PF05175_consen 99 FDLI---------------------------------------VSNPPFHAGGDDGLDLLRDFIEQARRYLKPGG 134 (170)
T ss_dssp EEEE---------------------------------------EE---SBTTSHCHHHHHHHHHHHHHHHEEEEE
T ss_pred eeEE---------------------------------------EEccchhcccccchhhHHHHHHHHHHhccCCC
Confidence 6887 33222444443 345688999999999999
|
; GO: 0008168 methyltransferase activity; PDB: 1WY7_A 1DUS_A 2OZV_A 2PJD_A 1VQ1_A 1NV9_A 1SG9_C 1NV8_A 3Q87_B 3DMF_A .... |
| >PTZ00146 fibrillarin; Provisional | Back alignment and domain information |
|---|
Probab=95.70 E-value=0.23 Score=44.37 Aligned_cols=105 Identities=10% Similarity=0.025 Sum_probs=65.1
Q ss_pred hcCCCeEEEecCC-------------CCceEEEeechh-----hhhhhccCCCceEEecCCCCCC------CCcceEecc
Q 036440 25 FERLGSLVDVGAF-------------PCVKCTEFDQPH-----VVANLLDTNNLKYLADDFFQSI------PPVCMIPLR 80 (181)
Q Consensus 25 ~~~~~~lvDvG~~-------------P~l~~~~~DlP~-----Vv~~a~~~~ri~~~~gDff~~~------P~~d~~~~~ 80 (181)
++.-.+|||+|+- |.=+.+.+|+-+ .++.+....+|..+-+|...+. +..|++
T Consensus 130 IkpG~~VLDLGaG~G~~t~~lAdiVG~~G~VyAVD~s~r~~~dLl~~ak~r~NI~~I~~Da~~p~~y~~~~~~vDvV--- 206 (293)
T PTZ00146 130 IKPGSKVLYLGAASGTTVSHVSDLVGPEGVVYAVEFSHRSGRDLTNMAKKRPNIVPIIEDARYPQKYRMLVPMVDVI--- 206 (293)
T ss_pred cCCCCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECcHHHHHHHHHHhhhcCCCEEEECCccChhhhhcccCCCCEE---
Confidence 3444689999922 233567778653 3444444578999999976431 224665
Q ss_pred ccchhhhHHhhhhhhhhcCCCccchhhhhhcccccceeeeeeccCChHHHHHHHHHHHHHhccCC------------ccC
Q 036440 81 LGYSHIKIMIAFFIRLVVGRGRLHIFSWLNFMKRVINMQIIIHVFGDEESVKILKICREAITSKA------------KLS 148 (181)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~iLHdw~D~~~~~iL~~~~~a~~~~g------------~eR 148 (181)
++... ..++...++.+++..|+|+| ...
T Consensus 207 ------------------------------------~~Dva----~pdq~~il~~na~r~LKpGG~~vI~ika~~id~g~ 246 (293)
T PTZ00146 207 ------------------------------------FADVA----QPDQARIVALNAQYFLKNGGHFIISIKANCIDSTA 246 (293)
T ss_pred ------------------------------------EEeCC----CcchHHHHHHHHHHhccCCCEEEEEEeccccccCC
Confidence 33321 12244456678889999999 122
Q ss_pred CHHHH----HHHHHhCCCeEEEEEEcCC
Q 036440 149 TEKEL----ESLFVEVHFHHYKITPLFG 172 (181)
Q Consensus 149 t~~E~----~~Ll~~aGf~~~~i~~~~~ 172 (181)
+.++. .++|+++||+.++...+..
T Consensus 247 ~pe~~f~~ev~~L~~~GF~~~e~v~L~P 274 (293)
T PTZ00146 247 KPEVVFASEVQKLKKEGLKPKEQLTLEP 274 (293)
T ss_pred CHHHHHHHHHHHHHHcCCceEEEEecCC
Confidence 23333 4889999999888876653
|
|
| >PRK00107 gidB 16S rRNA methyltransferase GidB; Reviewed | Back alignment and domain information |
|---|
Probab=95.62 E-value=0.27 Score=40.53 Aligned_cols=103 Identities=17% Similarity=0.181 Sum_probs=73.5
Q ss_pred cCCCeEEEec------------CCCCceEEEeec-hhhhhhhcc------CCCceEEecCCCCCCC--CcceEeccccch
Q 036440 26 ERLGSLVDVG------------AFPCVKCTEFDQ-PHVVANLLD------TNNLKYLADDFFQSIP--PVCMIPLRLGYS 84 (181)
Q Consensus 26 ~~~~~lvDvG------------~~P~l~~~~~Dl-P~Vv~~a~~------~~ri~~~~gDff~~~P--~~d~~~~~~~~~ 84 (181)
..-.+++|+| ++|..+.+.+|. |..++.+.. -++++++.+|..+-.+ ..|++
T Consensus 44 ~~g~~VLDiGcGtG~~al~la~~~~~~~V~giD~s~~~l~~A~~~~~~~~l~~i~~~~~d~~~~~~~~~fDlV------- 116 (187)
T PRK00107 44 PGGERVLDVGSGAGFPGIPLAIARPELKVTLVDSLGKKIAFLREVAAELGLKNVTVVHGRAEEFGQEEKFDVV------- 116 (187)
T ss_pred CCCCeEEEEcCCCCHHHHHHHHHCCCCeEEEEeCcHHHHHHHHHHHHHcCCCCEEEEeccHhhCCCCCCccEE-------
Confidence 3457899999 579999999998 555554431 2349999999865322 36777
Q ss_pred hhhHHhhhhhhhhcCCCccchhhhhhcccccceeeeeeccCChHHHHHHHHHHHHHhccCC------ccCCHHHHHHHHH
Q 036440 85 HIKIMIAFFIRLVVGRGRLHIFSWLNFMKRVINMQIIIHVFGDEESVKILKICREAITSKA------KLSTEKELESLFV 158 (181)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~iLHdw~D~~~~~iL~~~~~a~~~~g------~eRt~~E~~~Ll~ 158 (181)
+... . .....+++.++..++||| ......++.++.+
T Consensus 117 --------------------------------~~~~-~-----~~~~~~l~~~~~~LkpGG~lv~~~~~~~~~~l~~~~~ 158 (187)
T PRK00107 117 --------------------------------TSRA-V-----ASLSDLVELCLPLLKPGGRFLALKGRDPEEEIAELPK 158 (187)
T ss_pred --------------------------------EEcc-c-----cCHHHHHHHHHHhcCCCeEEEEEeCCChHHHHHHHHH
Confidence 3322 1 223568899999999999 5667788899999
Q ss_pred hCCCeEEEEE--EcCCC
Q 036440 159 EVHFHHYKIT--PLFGL 173 (181)
Q Consensus 159 ~aGf~~~~i~--~~~~~ 173 (181)
.-|+.+.++. .++|.
T Consensus 159 ~~~~~~~~~~~~~~~~~ 175 (187)
T PRK00107 159 ALGGKVEEVIELTLPGL 175 (187)
T ss_pred hcCceEeeeEEEecCCC
Confidence 9999987665 45553
|
|
| >TIGR00406 prmA ribosomal protein L11 methyltransferase | Back alignment and domain information |
|---|
Probab=95.61 E-value=0.086 Score=45.74 Aligned_cols=100 Identities=14% Similarity=0.082 Sum_probs=64.7
Q ss_pred CCeEEEec-----------CCCCceEEEeech-hhhhhhc-------cCCCceEEecCCCCCCC-CcceEeccccchhhh
Q 036440 28 LGSLVDVG-----------AFPCVKCTEFDQP-HVVANLL-------DTNNLKYLADDFFQSIP-PVCMIPLRLGYSHIK 87 (181)
Q Consensus 28 ~~~lvDvG-----------~~P~l~~~~~DlP-~Vv~~a~-------~~~ri~~~~gDff~~~P-~~d~~~~~~~~~~~~ 87 (181)
-.+++|+| +.+.-+.+.+|.- ..++.+. ..+++....+|.....+ ..|++
T Consensus 160 g~~VLDvGcGsG~lai~aa~~g~~~V~avDid~~al~~a~~n~~~n~~~~~~~~~~~~~~~~~~~~fDlV---------- 229 (288)
T TIGR00406 160 DKNVIDVGCGSGILSIAALKLGAAKVVGIDIDPLAVESARKNAELNQVSDRLQVKLIYLEQPIEGKADVI---------- 229 (288)
T ss_pred CCEEEEeCCChhHHHHHHHHcCCCeEEEEECCHHHHHHHHHHHHHcCCCcceEEEecccccccCCCceEE----------
Confidence 37999999 4444578999984 4444443 24566666665332222 25776
Q ss_pred HHhhhhhhhhcCCCccchhhhhhcccccceeeeeeccCChHHHHHHHHHHHHHhccCC-------ccCCHHHHHHHHHhC
Q 036440 88 IMIAFFIRLVVGRGRLHIFSWLNFMKRVINMQIIIHVFGDEESVKILKICREAITSKA-------KLSTEKELESLFVEV 160 (181)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~iLHdw~D~~~~~iL~~~~~a~~~~g-------~eRt~~E~~~Ll~~a 160 (181)
+. +++ -+.-.++++.+...++||| .....+++.+.+++.
T Consensus 230 -----------------------------va-n~~----~~~l~~ll~~~~~~LkpgG~li~sgi~~~~~~~v~~~~~~~ 275 (288)
T TIGR00406 230 -----------------------------VA-NIL----AEVIKELYPQFSRLVKPGGWLILSGILETQAQSVCDAYEQG 275 (288)
T ss_pred -----------------------------EE-ecC----HHHHHHHHHHHHHHcCCCcEEEEEeCcHhHHHHHHHHHHcc
Confidence 22 222 2234578999999999999 445567888888776
Q ss_pred CCeEEEEEEcCC
Q 036440 161 HFHHYKITPLFG 172 (181)
Q Consensus 161 Gf~~~~i~~~~~ 172 (181)
|+.+++....+
T Consensus 276 -f~~~~~~~~~~ 286 (288)
T TIGR00406 276 -FTVVEIRQREE 286 (288)
T ss_pred -CceeeEeccCC
Confidence 99888765443
|
Ribosomal protein L11 methyltransferase is an S-adenosyl-L-methionine-dependent methyltransferase required for the modification of ribosomal protein L11. This protein is found in bacteria and (with a probable transit peptide) in Arabidopsis. |
| >PF05401 NodS: Nodulation protein S (NodS); InterPro: IPR008715 This entry consists of nodulation S (NodS) proteins | Back alignment and domain information |
|---|
Probab=95.57 E-value=0.025 Score=48.20 Aligned_cols=82 Identities=18% Similarity=0.267 Sum_probs=62.5
Q ss_pred hcCCCeEEEec----------CCCCceEEEeec-hhhhhhhcc----CCCceEEecCCCCCCCC--cceEeccccchhhh
Q 036440 25 FERLGSLVDVG----------AFPCVKCTEFDQ-PHVVANLLD----TNNLKYLADDFFQSIPP--VCMIPLRLGYSHIK 87 (181)
Q Consensus 25 ~~~~~~lvDvG----------~~P~l~~~~~Dl-P~Vv~~a~~----~~ri~~~~gDff~~~P~--~d~~~~~~~~~~~~ 87 (181)
-.++++++++| +--+-+.+..|. |..++.+.. .++|+++..|+=+.+|. .|++
T Consensus 41 ~~ry~~alEvGCs~G~lT~~LA~rCd~LlavDis~~Al~~Ar~Rl~~~~~V~~~~~dvp~~~P~~~FDLI---------- 110 (201)
T PF05401_consen 41 RRRYRRALEVGCSIGVLTERLAPRCDRLLAVDISPRALARARERLAGLPHVEWIQADVPEFWPEGRFDLI---------- 110 (201)
T ss_dssp TSSEEEEEEE--TTSHHHHHHGGGEEEEEEEES-HHHHHHHHHHTTT-SSEEEEES-TTT---SS-EEEE----------
T ss_pred ccccceeEecCCCccHHHHHHHHhhCceEEEeCCHHHHHHHHHhcCCCCCeEEEECcCCCCCCCCCeeEE----------
Confidence 45678999999 333557899999 777777752 57999999999887776 5898
Q ss_pred HHhhhhhhhhcCCCccchhhhhhcccccceeeeeeccCCh-HHHHHHHHHHHHHhccCC
Q 036440 88 IMIAFFIRLVVGRGRLHIFSWLNFMKRVINMQIIIHVFGD-EESVKILKICREAITSKA 145 (181)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~iLHdw~D-~~~~~iL~~~~~a~~~~g 145 (181)
+++-|+|.++| ++-...++++..+++|||
T Consensus 111 -----------------------------V~SEVlYYL~~~~~L~~~l~~l~~~L~pgG 140 (201)
T PF05401_consen 111 -----------------------------VLSEVLYYLDDAEDLRAALDRLVAALAPGG 140 (201)
T ss_dssp -----------------------------EEES-GGGSSSHHHHHHHHHHHHHTEEEEE
T ss_pred -----------------------------EEehHhHcCCCHHHHHHHHHHHHHHhCCCC
Confidence 99999999987 677889999999999999
|
The products of the rhizobial nodulation genes are involved in the biosynthesis of lipochitin oligosaccharides (LCOs), which are host-specific signal molecules required for nodule formation. NodS is an S-adenosyl-L-methionine (SAM)-dependent methyltransferase involved in N methylation of LCOs. NodS uses N-deacetylated chitooligosaccharides, the products of the NodBC proteins, as its methyl acceptors [].; GO: 0008757 S-adenosylmethionine-dependent methyltransferase activity, 0009312 oligosaccharide biosynthetic process, 0009877 nodulation; PDB: 3OFK_D 3OFJ_A. |
| >cd02440 AdoMet_MTases S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy) | Back alignment and domain information |
|---|
Probab=95.55 E-value=0.11 Score=34.52 Aligned_cols=76 Identities=18% Similarity=0.218 Sum_probs=55.9
Q ss_pred eEEEec-----------CCCCceEEEeechh-hhhhhc------cCCCceEEecCCCCCCC----CcceEeccccchhhh
Q 036440 30 SLVDVG-----------AFPCVKCTEFDQPH-VVANLL------DTNNLKYLADDFFQSIP----PVCMIPLRLGYSHIK 87 (181)
Q Consensus 30 ~lvDvG-----------~~P~l~~~~~DlP~-Vv~~a~------~~~ri~~~~gDff~~~P----~~d~~~~~~~~~~~~ 87 (181)
+++|+| ..+..+.+.+|+.. .+..+. ...++++..+|+.+..+ ..|++
T Consensus 1 ~ildig~G~G~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~i---------- 70 (107)
T cd02440 1 RVLDLGCGTGALALALASGPGARVTGVDISPVALELARKAAAALLADNVEVLKGDAEELPPEADESFDVI---------- 70 (107)
T ss_pred CeEEEcCCccHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHhcccccceEEEEcChhhhccccCCceEEE----------
Confidence 467888 35778899999854 333222 35689999999997542 26887
Q ss_pred HHhhhhhhhhcCCCccchhhhhhcccccceeeeeeccCChHHHHHHHHHHHHHhccCC
Q 036440 88 IMIAFFIRLVVGRGRLHIFSWLNFMKRVINMQIIIHVFGDEESVKILKICREAITSKA 145 (181)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~iLHdw~D~~~~~iL~~~~~a~~~~g 145 (181)
++...+|.+ .+...++++.+...++++|
T Consensus 71 -----------------------------~~~~~~~~~-~~~~~~~l~~~~~~l~~~g 98 (107)
T cd02440 71 -----------------------------ISDPPLHHL-VEDLARFLEEARRLLKPGG 98 (107)
T ss_pred -----------------------------EEccceeeh-hhHHHHHHHHHHHHcCCCC
Confidence 666677665 6788889999999999987
|
There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.). |
| >TIGR00091 tRNA (guanine-N(7)-)-methyltransferase | Back alignment and domain information |
|---|
Probab=95.51 E-value=0.03 Score=45.61 Aligned_cols=43 Identities=16% Similarity=0.185 Sum_probs=33.6
Q ss_pred CCCeEEEec------------CCCCceEEEeec-hhhhhhhcc------CCCceEEecCCCC
Q 036440 27 RLGSLVDVG------------AFPCVKCTEFDQ-PHVVANLLD------TNNLKYLADDFFQ 69 (181)
Q Consensus 27 ~~~~lvDvG------------~~P~l~~~~~Dl-P~Vv~~a~~------~~ri~~~~gDff~ 69 (181)
.-..+||+| ++|+...+.+|. +..++.+.. -.+++++.+|+.+
T Consensus 16 ~~~~ilDiGcG~G~~~~~la~~~p~~~v~gvD~~~~~l~~a~~~~~~~~l~ni~~i~~d~~~ 77 (194)
T TIGR00091 16 KAPLHLEIGCGKGRFLIDMAKQNPDKNFLGIEIHTPIVLAANNKANKLGLKNLHVLCGDANE 77 (194)
T ss_pred CCceEEEeCCCccHHHHHHHHhCCCCCEEEEEeeHHHHHHHHHHHHHhCCCCEEEEccCHHH
Confidence 457899999 799999999998 555555431 2589999999875
|
In E. coli, this protein flanks the DNA repair protein MutY, also called micA. |
| >TIGR00027 mthyl_TIGR00027 methyltransferase, putative, TIGR00027 family | Back alignment and domain information |
|---|
Probab=95.42 E-value=0.19 Score=43.42 Aligned_cols=44 Identities=25% Similarity=0.326 Sum_probs=33.8
Q ss_pred CCCeEEEec----------CCC-CceEEEeechhhhhhhc---------cCCCceEEecCCCCC
Q 036440 27 RLGSLVDVG----------AFP-CVKCTEFDQPHVVANLL---------DTNNLKYLADDFFQS 70 (181)
Q Consensus 27 ~~~~lvDvG----------~~P-~l~~~~~DlP~Vv~~a~---------~~~ri~~~~gDff~~ 70 (181)
+...||.+| ..| +++...+|+|+|++.-. ..++.++++.|+.++
T Consensus 81 g~~qvV~LGaGlDTr~~Rl~~~~~~~~~EvD~P~v~~~K~~~l~~~~~~~~~~~~~v~~Dl~~~ 144 (260)
T TIGR00027 81 GIRQVVILGAGLDTRAYRLPWPDGTRVFEVDQPAVLAFKEKVLAELGAEPPAHRRAVPVDLRQD 144 (260)
T ss_pred CCcEEEEeCCccccHHHhcCCCCCCeEEECCChHHHHHHHHHHHHcCCCCCCceEEeccCchhh
Confidence 467899999 334 58899999999987332 367899999998743
|
This model represents a set of probable methyltransferases, about 300 amino acids long, with essentially full length homology. Members share an N-terminal region described by Pfam model pfam02409. Included are a paralogous family of 12 proteins in Mycobacterium tuberculosis, plus close homologs in related species, a family of 8 in the archaeon Methanosarcina acetivorans, and small numbers of members in other species, including plants. |
| >PRK07402 precorrin-6B methylase; Provisional | Back alignment and domain information |
|---|
Probab=95.27 E-value=0.19 Score=40.63 Aligned_cols=104 Identities=11% Similarity=0.103 Sum_probs=66.2
Q ss_pred HHHHhhhhhcCCCeEEEec------------CCCCceEEEeec-hhhhhhhcc------CCCceEEecCCCCCCC----C
Q 036440 17 ALKYCKQIFERLGSLVDVG------------AFPCVKCTEFDQ-PHVVANLLD------TNNLKYLADDFFQSIP----P 73 (181)
Q Consensus 17 ~l~~~~~d~~~~~~lvDvG------------~~P~l~~~~~Dl-P~Vv~~a~~------~~ri~~~~gDff~~~P----~ 73 (181)
+++.. +...-.+++|+| ..|..+.+.+|. |..++.+.. .++++++.+|..+.++ .
T Consensus 32 l~~~l--~~~~~~~VLDiG~G~G~~~~~la~~~~~~~V~~vD~s~~~~~~a~~n~~~~~~~~v~~~~~d~~~~~~~~~~~ 109 (196)
T PRK07402 32 LISQL--RLEPDSVLWDIGAGTGTIPVEAGLLCPKGRVIAIERDEEVVNLIRRNCDRFGVKNVEVIEGSAPECLAQLAPA 109 (196)
T ss_pred HHHhc--CCCCCCEEEEeCCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCCeEEEECchHHHHhhCCCC
Confidence 34444 445567899999 468889999998 777765532 2578999988764221 1
Q ss_pred cceEeccccchhhhHHhhhhhhhhcCCCccchhhhhhcccccceeeeeeccCChHHHHHHHHHHHHHhccCC-------c
Q 036440 74 VCMIPLRLGYSHIKIMIAFFIRLVVGRGRLHIFSWLNFMKRVINMQIIIHVFGDEESVKILKICREAITSKA-------K 146 (181)
Q Consensus 74 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~iLHdw~D~~~~~iL~~~~~a~~~~g-------~ 146 (181)
.|.+ .+ +. .....++|+.+...++||| .
T Consensus 110 ~d~v---------------------------------------~~-----~~-~~~~~~~l~~~~~~LkpgG~li~~~~~ 144 (196)
T PRK07402 110 PDRV---------------------------------------CI-----EG-GRPIKEILQAVWQYLKPGGRLVATASS 144 (196)
T ss_pred CCEE---------------------------------------EE-----EC-CcCHHHHHHHHHHhcCCCeEEEEEeec
Confidence 2333 11 22 2345689999999999999 2
Q ss_pred cCCHHHHHHHHHhC---CCeEEEE
Q 036440 147 LSTEKELESLFVEV---HFHHYKI 167 (181)
Q Consensus 147 eRt~~E~~~Ll~~a---Gf~~~~i 167 (181)
..+..+..+.+++. |+..+++
T Consensus 145 ~~~~~~~~~~~~~~~~~~~~~~~~ 168 (196)
T PRK07402 145 LEGLYAISEGLAQLQARNIEVVQA 168 (196)
T ss_pred HHHHHHHHHHHHhcCCCCceEEEE
Confidence 22334455566553 5666655
|
|
| >COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=95.14 E-value=0.19 Score=44.69 Aligned_cols=136 Identities=18% Similarity=0.200 Sum_probs=80.6
Q ss_pred HHHHHHhhhhhcCCCeEEEec------------CCCCceEEEeechh-hhh-------hhccCCCceEEecCCCCCCCCc
Q 036440 15 SLALKYCKQIFERLGSLVDVG------------AFPCVKCTEFDQPH-VVA-------NLLDTNNLKYLADDFFQSIPPV 74 (181)
Q Consensus 15 ~~~l~~~~~d~~~~~~lvDvG------------~~P~l~~~~~DlP~-Vv~-------~a~~~~ri~~~~gDff~~~P~~ 74 (181)
+.+++.. .++.-.+||||| .| +++++.+++-. -.+ .....++|++.-.|+-+-...-
T Consensus 62 ~~~~~kl--~L~~G~~lLDiGCGWG~l~~~aA~~y-~v~V~GvTlS~~Q~~~~~~r~~~~gl~~~v~v~l~d~rd~~e~f 138 (283)
T COG2230 62 DLILEKL--GLKPGMTLLDIGCGWGGLAIYAAEEY-GVTVVGVTLSEEQLAYAEKRIAARGLEDNVEVRLQDYRDFEEPF 138 (283)
T ss_pred HHHHHhc--CCCCCCEEEEeCCChhHHHHHHHHHc-CCEEEEeeCCHHHHHHHHHHHHHcCCCcccEEEecccccccccc
Confidence 4455556 677778999999 67 89999999842 222 2234678999888876543335
Q ss_pred ceEecccc-chhhhH--Hhhhhhhh----hcCCCccchhhhhhcccccceeeeeeccCChHHHHHHHHHHHHHhccCCcc
Q 036440 75 CMIPLRLG-YSHIKI--MIAFFIRL----VVGRGRLHIFSWLNFMKRVINMQIIIHVFGDEESVKILKICREAITSKAKL 147 (181)
Q Consensus 75 d~~~~~~~-~~~~~~--~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~l~~iLHdw~D~~~~~iL~~~~~a~~~~g~e 147 (181)
|.+ .+.+ |-|+.. --+||-+. .+|+ .++|..|++.-.... .--.=+.+-+-|||..
T Consensus 139 DrI-vSvgmfEhvg~~~~~~ff~~~~~~L~~~G--------------~~llh~I~~~~~~~~--~~~~~i~~yiFPgG~l 201 (283)
T COG2230 139 DRI-VSVGMFEHVGKENYDDFFKKVYALLKPGG--------------RMLLHSITGPDQEFR--RFPDFIDKYIFPGGEL 201 (283)
T ss_pred cee-eehhhHHHhCcccHHHHHHHHHhhcCCCc--------------eEEEEEecCCCcccc--cchHHHHHhCCCCCcC
Confidence 544 1111 111111 12222221 3333 334444444433321 2233345566789999
Q ss_pred CCHHHHHHHHHhCCCeEEEEEEc
Q 036440 148 STEKELESLFVEVHFHHYKITPL 170 (181)
Q Consensus 148 Rt~~E~~~Ll~~aGf~~~~i~~~ 170 (181)
+|..+......++||.+..+...
T Consensus 202 Ps~~~i~~~~~~~~~~v~~~~~~ 224 (283)
T COG2230 202 PSISEILELASEAGFVVLDVESL 224 (283)
T ss_pred CCHHHHHHHHHhcCcEEehHhhh
Confidence 99999999999999998766443
|
|
| >TIGR03704 PrmC_rel_meth putative protein-(glutamine-N5) methyltransferase, unknown substrate-specific | Back alignment and domain information |
|---|
Probab=94.64 E-value=0.9 Score=38.83 Aligned_cols=124 Identities=10% Similarity=0.059 Sum_probs=72.0
Q ss_pred CCeEEEec------------CCCCceEEEeec-hhhhhhhcc---CCCceEEecCCCCCCC-----CcceEeccccchhh
Q 036440 28 LGSLVDVG------------AFPCVKCTEFDQ-PHVVANLLD---TNNLKYLADDFFQSIP-----PVCMIPLRLGYSHI 86 (181)
Q Consensus 28 ~~~lvDvG------------~~P~l~~~~~Dl-P~Vv~~a~~---~~ri~~~~gDff~~~P-----~~d~~~~~~~~~~~ 86 (181)
..+++|+| .+|..+.+.+|. |..++.+.. ..+++++.+|+++.++ ..|++..+-=|...
T Consensus 87 ~~~vLDlg~GsG~i~l~la~~~~~~~v~~vDis~~al~~A~~N~~~~~~~~~~~D~~~~l~~~~~~~fDlVv~NPPy~~~ 166 (251)
T TIGR03704 87 TLVVVDLCCGSGAVGAALAAALDGIELHAADIDPAAVRCARRNLADAGGTVHEGDLYDALPTALRGRVDILAANAPYVPT 166 (251)
T ss_pred CCEEEEecCchHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCEEEEeechhhcchhcCCCEeEEEECCCCCCc
Confidence 34899999 678889999998 777766543 2346889999987654 25777444433100
Q ss_pred hHHhhhhhhhhcCCCccchhhhhhcccccceeeeeec--cCChHHHHHHHHHHHHHhccCC------ccCCHHHHHHHHH
Q 036440 87 KIMIAFFIRLVVGRGRLHIFSWLNFMKRVINMQIIIH--VFGDEESVKILKICREAITSKA------KLSTEKELESLFV 158 (181)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~iLH--dw~D~~~~~iL~~~~~a~~~~g------~eRt~~E~~~Ll~ 158 (181)
.- .+.++... .++ --+.-|- .=.-+--.+|++++...++|+| .....++..++++
T Consensus 167 ~~-----------~~~~~~e~-~~~-----ep~~al~gg~dgl~~~~~i~~~a~~~L~~gG~l~l~~~~~~~~~v~~~l~ 229 (251)
T TIGR03704 167 DA-----------IALMPPEA-RDH-----EPRVALDGGADGLDVLRRVAAGAPDWLAPGGHLLVETSERQAPLAVEAFA 229 (251)
T ss_pred hh-----------hhcCCHHH-HhC-----CCHHHhcCCCcHHHHHHHHHHHHHHhcCCCCEEEEEECcchHHHHHHHHH
Confidence 00 00000000 000 0000000 0001123478888889999999 4455778899999
Q ss_pred hCCCeEEEEE
Q 036440 159 EVHFHHYKIT 168 (181)
Q Consensus 159 ~aGf~~~~i~ 168 (181)
+.||...-+.
T Consensus 230 ~~g~~~~~~~ 239 (251)
T TIGR03704 230 RAGLIARVAS 239 (251)
T ss_pred HCCCCceeeE
Confidence 9999765443
|
This protein family is closely related to two different families of protein-(glutamine-N5) methyltransferase. The first is PrmB, which modifies ribosomal protein L3 in some bacteria. The second is PrmC (HemK), which modifies peptide chain release factors 1 and 2 in most bacteria and also in eukaryotes. The glutamine side chain-binding motif NPPY shared by PrmB and PrmC is N[VAT]PY in this family. The protein substrate is unknown. |
| >PRK13256 thiopurine S-methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=94.48 E-value=0.98 Score=38.76 Aligned_cols=114 Identities=11% Similarity=0.067 Sum_probs=81.1
Q ss_pred HHHHHHhhhh-hcCCCeEEEec----------CCCCceEEEeechh-hhhhh------------------ccCCCceEEe
Q 036440 15 SLALKYCKQI-FERLGSLVDVG----------AFPCVKCTEFDQPH-VVANL------------------LDTNNLKYLA 64 (181)
Q Consensus 15 ~~~l~~~~~d-~~~~~~lvDvG----------~~P~l~~~~~DlP~-Vv~~a------------------~~~~ri~~~~ 64 (181)
+.+.+.++.. ...-.+|++.| +--+.+.+.+|+-+ -++.+ ....+|++..
T Consensus 30 p~L~~~~~~l~~~~~~rvLvPgCGkg~D~~~LA~~G~~V~GvDlS~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~ 109 (226)
T PRK13256 30 EFLVKHFSKLNINDSSVCLIPMCGCSIDMLFFLSKGVKVIGIELSEKAVLSFFSQNTINYEVIHGNDYKLYKGDDIEIYV 109 (226)
T ss_pred HHHHHHHHhcCCCCCCeEEEeCCCChHHHHHHHhCCCcEEEEecCHHHHHHHHHHcCCCcceecccccceeccCceEEEE
Confidence 4555666421 12236899998 44566799999954 34332 0146899999
Q ss_pred cCCCCCCC------CcceEeccccchhhhHHhhhhhhhhcCCCccchhhhhhcccccceeeeeeccCChHHHHHHHHHHH
Q 036440 65 DDFFQSIP------PVCMIPLRLGYSHIKIMIAFFIRLVVGRGRLHIFSWLNFMKRVINMQIIIHVFGDEESVKILKICR 138 (181)
Q Consensus 65 gDff~~~P------~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~iLHdw~D~~~~~iL~~~~ 138 (181)
+|||+--| ..|.+ +=+.++|-.+.+...+..+.++
T Consensus 110 gD~f~l~~~~~~~~~fD~V---------------------------------------yDra~~~Alpp~~R~~Y~~~l~ 150 (226)
T PRK13256 110 ADIFNLPKIANNLPVFDIW---------------------------------------YDRGAYIALPNDLRTNYAKMML 150 (226)
T ss_pred ccCcCCCccccccCCcCee---------------------------------------eeehhHhcCCHHHHHHHHHHHH
Confidence 99997422 24776 6778888999999999999999
Q ss_pred HHhccCC-----------------ccCCHHHHHHHHHhCCCeEEEEE
Q 036440 139 EAITSKA-----------------KLSTEKELESLFVEVHFHHYKIT 168 (181)
Q Consensus 139 ~a~~~~g-----------------~eRt~~E~~~Ll~~aGf~~~~i~ 168 (181)
..++|+| ...|.+|+++++.. +|.+..+.
T Consensus 151 ~lL~pgg~llll~~~~~~~~~GPPf~v~~~e~~~lf~~-~~~i~~l~ 196 (226)
T PRK13256 151 EVCSNNTQILLLVMEHDKKSQTPPYSVTQAELIKNFSA-KIKFELID 196 (226)
T ss_pred HHhCCCcEEEEEEEecCCCCCCCCCcCCHHHHHHhccC-CceEEEee
Confidence 9999998 44688999999964 44444443
|
|
| >COG4123 Predicted O-methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.48 E-value=0.4 Score=41.94 Aligned_cols=141 Identities=11% Similarity=0.093 Sum_probs=84.5
Q ss_pred HHHHHhhhhhcCCCeEEEec------------CCCCceEEEeechhhh-hhh-------ccCCCceEEecCCCCC---CC
Q 036440 16 LALKYCKQIFERLGSLVDVG------------AFPCVKCTEFDQPHVV-ANL-------LDTNNLKYLADDFFQS---IP 72 (181)
Q Consensus 16 ~~l~~~~~d~~~~~~lvDvG------------~~P~l~~~~~DlP~Vv-~~a-------~~~~ri~~~~gDff~~---~P 72 (181)
.++..|. .....++++|+| ++|.++.+.+++-+.. +.| ...+||+++.+|+-+- .+
T Consensus 34 iLL~~~~-~~~~~~~IlDlGaG~G~l~L~la~r~~~a~I~~VEiq~~~a~~A~~nv~ln~l~~ri~v~~~Di~~~~~~~~ 112 (248)
T COG4123 34 ILLAAFA-PVPKKGRILDLGAGNGALGLLLAQRTEKAKIVGVEIQEEAAEMAQRNVALNPLEERIQVIEADIKEFLKALV 112 (248)
T ss_pred HHHHhhc-ccccCCeEEEecCCcCHHHHHHhccCCCCcEEEEEeCHHHHHHHHHHHHhCcchhceeEehhhHHHhhhccc
Confidence 3556554 445589999999 8888999999986543 333 2478999999998653 22
Q ss_pred C--cceEeccccchhhhHHhhhhhhhhcCCCccchhhhhhcccccceeeeeeccCChHHHHHHHHHHHHHhccCC-----
Q 036440 73 P--VCMIPLRLGYSHIKIMIAFFIRLVVGRGRLHIFSWLNFMKRVINMQIIIHVFGDEESVKILKICREAITSKA----- 145 (181)
Q Consensus 73 ~--~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~iLHdw~D~~~~~iL~~~~~a~~~~g----- 145 (181)
. .|++-.+==|+-.-... +.+. .+-+=|.-..-.--.+++.++..++++|
T Consensus 113 ~~~fD~Ii~NPPyf~~~~~~-----------~~~~------------~~~~Ar~e~~~~le~~i~~a~~~lk~~G~l~~V 169 (248)
T COG4123 113 FASFDLIICNPPYFKQGSRL-----------NENP------------LRAIARHEITLDLEDLIRAAAKLLKPGGRLAFV 169 (248)
T ss_pred ccccCEEEeCCCCCCCcccc-----------CcCh------------hhhhhhhhhcCCHHHHHHHHHHHccCCCEEEEE
Confidence 2 36663332221000000 0000 0000000011112368899999999999
Q ss_pred -ccCCHHHHHHHHHhCCCeEEEEEEcC---CC---CeEEEEE
Q 036440 146 -KLSTEKELESLFVEVHFHHYKITPLF---GL---PSLIEVY 180 (181)
Q Consensus 146 -~eRt~~E~~~Ll~~aGf~~~~i~~~~---~~---~~viE~~ 180 (181)
+.=...|+-+++.+.+|..-++..+. +. .-+||+.
T Consensus 170 ~r~erl~ei~~~l~~~~~~~k~i~~V~p~~~k~A~~vLv~~~ 211 (248)
T COG4123 170 HRPERLAEIIELLKSYNLEPKRIQFVYPKIGKAANRVLVEAI 211 (248)
T ss_pred ecHHHHHHHHHHHHhcCCCceEEEEecCCCCCcceEEEEEEe
Confidence 66667789999999999887776543 33 2456654
|
|
| >PHA03411 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=94.41 E-value=0.47 Score=42.23 Aligned_cols=116 Identities=7% Similarity=0.035 Sum_probs=69.7
Q ss_pred CCeEEEec------------CCCCceEEEeec-hhhhhhhcc-CCCceEEecCCCCCCCC--cceEeccccchhhhHHhh
Q 036440 28 LGSLVDVG------------AFPCVKCTEFDQ-PHVVANLLD-TNNLKYLADDFFQSIPP--VCMIPLRLGYSHIKIMIA 91 (181)
Q Consensus 28 ~~~lvDvG------------~~P~l~~~~~Dl-P~Vv~~a~~-~~ri~~~~gDff~~~P~--~d~~~~~~~~~~~~~~~~ 91 (181)
-++|+|+| +.+..+.+.+|+ |..++.++. .++++++.+|+++..+. .|++..+--|.+..
T Consensus 65 ~grVLDLGcGsGilsl~la~r~~~~~V~gVDisp~al~~Ar~n~~~v~~v~~D~~e~~~~~kFDlIIsNPPF~~l~---- 140 (279)
T PHA03411 65 TGKVLDLCAGIGRLSFCMLHRCKPEKIVCVELNPEFARIGKRLLPEAEWITSDVFEFESNEKFDVVISNPPFGKIN---- 140 (279)
T ss_pred CCeEEEcCCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhCcCCEEEECchhhhcccCCCcEEEEcCCccccC----
Confidence 46899999 456678899998 556655543 46899999999975432 58885544432210
Q ss_pred hhhhhhcCCCccchhhhhhcccccceeeeeeccCChHHHHHHHHHHHHHhccCC-------------ccCCHHHHHHHHH
Q 036440 92 FFIRLVVGRGRLHIFSWLNFMKRVINMQIIIHVFGDEESVKILKICREAITSKA-------------KLSTEKELESLFV 158 (181)
Q Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~iLHdw~D~~~~~iL~~~~~a~~~~g-------------~eRt~~E~~~Ll~ 158 (181)
..+...|++|--+-.-.+.+ .-.+.++....-|.|+| ..-+.+||+.+|+
T Consensus 141 ----------~~d~~~~~~~~GG~~g~~~l-------~~~~~l~~v~~~L~p~G~~~~~yss~~~y~~sl~~~~y~~~l~ 203 (279)
T PHA03411 141 ----------TTDTKDVFEYTGGEFEFKVM-------TLGQKFADVGYFIVPTGSAGFAYSGRPYYDGTMKSNKYLKWSK 203 (279)
T ss_pred ----------chhhhhhhhhccCccccccc-------cHHHHHhhhHheecCCceEEEEEeccccccccCCHHHHHHHHH
Confidence 00011111110000000000 01356677777788888 6678899999999
Q ss_pred hCCCeE
Q 036440 159 EVHFHH 164 (181)
Q Consensus 159 ~aGf~~ 164 (181)
++||..
T Consensus 204 ~~g~~~ 209 (279)
T PHA03411 204 QTGLVT 209 (279)
T ss_pred hcCcEe
Confidence 999974
|
|
| >PRK01581 speE spermidine synthase; Validated | Back alignment and domain information |
|---|
Probab=94.17 E-value=0.22 Score=45.97 Aligned_cols=107 Identities=6% Similarity=0.011 Sum_probs=67.4
Q ss_pred cCCCeEEEec-----------CCCC-ceEEEeec-hhhhhhhcc-------------CCCceEEecCCCCCCCC----cc
Q 036440 26 ERLGSLVDVG-----------AFPC-VKCTEFDQ-PHVVANLLD-------------TNNLKYLADDFFQSIPP----VC 75 (181)
Q Consensus 26 ~~~~~lvDvG-----------~~P~-l~~~~~Dl-P~Vv~~a~~-------------~~ri~~~~gDff~~~P~----~d 75 (181)
.+.++||++| ++|. .+.+++|+ |.+++.++. .+|++++-+|.++-++. .|
T Consensus 149 ~~PkrVLIIGgGdG~tlrelLk~~~v~~It~VEIDpeVIelAr~~~~L~~~~~~~~~DpRV~vvi~Da~~fL~~~~~~YD 228 (374)
T PRK01581 149 IDPKRVLILGGGDGLALREVLKYETVLHVDLVDLDGSMINMARNVPELVSLNKSAFFDNRVNVHVCDAKEFLSSPSSLYD 228 (374)
T ss_pred CCCCEEEEECCCHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhccccchhccccCCCCceEEEECcHHHHHHhcCCCcc
Confidence 4568999999 7775 57888888 667776652 57999999988764322 47
Q ss_pred eEeccccchhhhHHhhhhhhhhcCCCccchhhhhhcccccceeeeeeccCChHHHHHHHHHHHHHhccCCcc-------C
Q 036440 76 MIPLRLGYSHIKIMIAFFIRLVVGRGRLHIFSWLNFMKRVINMQIIIHVFGDEESVKILKICREAITSKAKL-------S 148 (181)
Q Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~iLHdw~D~~~~~iL~~~~~a~~~~g~e-------R 148 (181)
++.+++-- -.-+.-+.-.....++.|+..++|||.- .
T Consensus 229 VIIvDl~D------------------------------------P~~~~~~~LyT~EFy~~~~~~LkPgGV~V~Qs~sp~ 272 (374)
T PRK01581 229 VIIIDFPD------------------------------------PATELLSTLYTSELFARIATFLTEDGAFVCQSNSPA 272 (374)
T ss_pred EEEEcCCC------------------------------------ccccchhhhhHHHHHHHHHHhcCCCcEEEEecCChh
Confidence 76222100 0000011123457899999999999921 0
Q ss_pred ----CHHHHHHHHHhCCCeEEEEE
Q 036440 149 ----TEKELESLFVEVHFHHYKIT 168 (181)
Q Consensus 149 ----t~~E~~~Ll~~aGf~~~~i~ 168 (181)
-.......|+++||......
T Consensus 273 ~~~~~~~~i~~tL~~af~~v~~y~ 296 (374)
T PRK01581 273 DAPLVYWSIGNTIEHAGLTVKSYH 296 (374)
T ss_pred hhHHHHHHHHHHHHHhCCceEEEE
Confidence 11235677899999876543
|
|
| >TIGR01177 conserved hypothetical protein TIGR01177 | Back alignment and domain information |
|---|
Probab=94.10 E-value=0.35 Score=42.63 Aligned_cols=113 Identities=16% Similarity=0.027 Sum_probs=72.7
Q ss_pred hhcCCCeEEEec----------CCCCceEEEeec-hhhhhhhcc------CCCceEEecCCCCC-CCC--cceEeccccc
Q 036440 24 IFERLGSLVDVG----------AFPCVKCTEFDQ-PHVVANLLD------TNNLKYLADDFFQS-IPP--VCMIPLRLGY 83 (181)
Q Consensus 24 d~~~~~~lvDvG----------~~P~l~~~~~Dl-P~Vv~~a~~------~~ri~~~~gDff~~-~P~--~d~~~~~~~~ 83 (181)
++..-..++|.| +..+.+.+..|. |..+..+.. ...+.+..+|+.+. .+. .|.+..+.-|
T Consensus 179 ~~~~g~~vLDp~cGtG~~lieaa~~~~~v~g~Di~~~~~~~a~~nl~~~g~~~i~~~~~D~~~l~~~~~~~D~Iv~dPPy 258 (329)
T TIGR01177 179 RVTEGDRVLDPFCGTGGFLIEAGLMGAKVIGCDIDWKMVAGARINLEHYGIEDFFVKRGDATKLPLSSESVDAIATDPPY 258 (329)
T ss_pred CCCCcCEEEECCCCCCHHHHHHHHhCCeEEEEcCCHHHHHHHHHHHHHhCCCCCeEEecchhcCCcccCCCCEEEECCCC
Confidence 455567899988 555678889998 556654431 23388999999862 322 5777443221
Q ss_pred hhhhHHhhhhhhhhcCCCccchhhhhhcccccceeeeee-ccCChHHHHHHHHHHHHHhccCC----ccCCHHHHHHHHH
Q 036440 84 SHIKIMIAFFIRLVVGRGRLHIFSWLNFMKRVINMQIII-HVFGDEESVKILKICREAITSKA----KLSTEKELESLFV 158 (181)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~iL-Hdw~D~~~~~iL~~~~~a~~~~g----~eRt~~E~~~Ll~ 158 (181)
. . +.-. ++...+--.++|+.+++.++||| -..+..+++.+++
T Consensus 259 g----------------------------~-----~~~~~~~~~~~l~~~~l~~~~r~Lk~gG~lv~~~~~~~~~~~~~~ 305 (329)
T TIGR01177 259 G----------------------------R-----STTAAGDGLESLYERSLEEFHEVLKSEGWIVYAVPTRIDLESLAE 305 (329)
T ss_pred c----------------------------C-----cccccCCchHHHHHHHHHHHHHHccCCcEEEEEEcCCCCHHHHHh
Confidence 0 0 0000 11223345689999999999999 3445568899999
Q ss_pred hCCCeEEEEEEc
Q 036440 159 EVHFHHYKITPL 170 (181)
Q Consensus 159 ~aGf~~~~i~~~ 170 (181)
++|| +....+.
T Consensus 306 ~~g~-i~~~~~~ 316 (329)
T TIGR01177 306 DAFR-VVKRFEV 316 (329)
T ss_pred hcCc-chheeee
Confidence 9999 7766554
|
This family is found exclusively in the Archaea. |
| >COG2813 RsmC 16S RNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=94.00 E-value=0.11 Score=46.77 Aligned_cols=124 Identities=16% Similarity=0.179 Sum_probs=77.0
Q ss_pred HHHHHHhhhhhcCCCeEEEec------------CCCCceEEEeechh-hhhhhcc------CCCceEEecCCCCCCCC-c
Q 036440 15 SLALKYCKQIFERLGSLVDVG------------AFPCVKCTEFDQPH-VVANLLD------TNNLKYLADDFFQSIPP-V 74 (181)
Q Consensus 15 ~~~l~~~~~d~~~~~~lvDvG------------~~P~l~~~~~DlP~-Vv~~a~~------~~ri~~~~gDff~~~P~-~ 74 (181)
+.+++.++ ...-.+++|+| .+|+.+.+.+|.-. .++.++. -++..+...|.|+++.. -
T Consensus 148 ~lLl~~l~--~~~~~~vlDlGCG~Gvlg~~la~~~p~~~vtmvDvn~~Av~~ar~Nl~~N~~~~~~v~~s~~~~~v~~kf 225 (300)
T COG2813 148 RLLLETLP--PDLGGKVLDLGCGYGVLGLVLAKKSPQAKLTLVDVNARAVESARKNLAANGVENTEVWASNLYEPVEGKF 225 (300)
T ss_pred HHHHHhCC--ccCCCcEEEeCCCccHHHHHHHHhCCCCeEEEEecCHHHHHHHHHhHHHcCCCccEEEEecccccccccc
Confidence 56778884 33344999999 89999999999864 4444432 12336788899988765 6
Q ss_pred ceEeccccchhhhHHhhhhhhhhcCCCccchhhhhhcccccceeeeeecc---CChHHHHHHHHHHHHHhccCCcc----
Q 036440 75 CMIPLRLGYSHIKIMIAFFIRLVVGRGRLHIFSWLNFMKRVINMQIIIHV---FGDEESVKILKICREAITSKAKL---- 147 (181)
Q Consensus 75 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~iLHd---w~D~~~~~iL~~~~~a~~~~g~e---- 147 (181)
|+| +..==+|. -.+.-+.+|++...+.+.+||+.
T Consensus 226 d~I---------------------------------------isNPPfh~G~~v~~~~~~~~i~~A~~~L~~gGeL~iVa 266 (300)
T COG2813 226 DLI---------------------------------------ISNPPFHAGKAVVHSLAQEIIAAAARHLKPGGELWIVA 266 (300)
T ss_pred cEE---------------------------------------EeCCCccCCcchhHHHHHHHHHHHHHhhccCCEEEEEE
Confidence 777 33333332 34555669999999999999911
Q ss_pred CCHHHHHHHHHhCCCeEEEEEEcCCCCeEEEEE
Q 036440 148 STEKELESLFVEVHFHHYKITPLFGLPSLIEVY 180 (181)
Q Consensus 148 Rt~~E~~~Ll~~aGf~~~~i~~~~~~~~viE~~ 180 (181)
....-|+.+|++. |+.+.+.--.+..-|+.++
T Consensus 267 n~~l~y~~~L~~~-Fg~v~~la~~~gf~Vl~a~ 298 (300)
T COG2813 267 NRHLPYEKKLKEL-FGNVEVLAKNGGFKVLRAK 298 (300)
T ss_pred cCCCChHHHHHHh-cCCEEEEEeCCCEEEEEEe
Confidence 1223344444443 4444444444444455443
|
|
| >PF03848 TehB: Tellurite resistance protein TehB; InterPro: IPR015985 Tellurite resistance protein TehB is part of a tellurite-reducing operon tehA and tehB | Back alignment and domain information |
|---|
Probab=93.83 E-value=0.4 Score=40.27 Aligned_cols=111 Identities=18% Similarity=0.218 Sum_probs=74.8
Q ss_pred HHHHHHhhhhhcCCCeEEEec----------CCCCceEEEeechhh-hhhhc-----cCCCceEEecCCCCC-CCC-cce
Q 036440 15 SLALKYCKQIFERLGSLVDVG----------AFPCVKCTEFDQPHV-VANLL-----DTNNLKYLADDFFQS-IPP-VCM 76 (181)
Q Consensus 15 ~~~l~~~~~d~~~~~~lvDvG----------~~P~l~~~~~DlP~V-v~~a~-----~~~ri~~~~gDff~~-~P~-~d~ 76 (181)
+.++++. +.-..+++||+| +--+...+.+|.-.+ ++.+. ..-.|+....|+-+. +|. .|.
T Consensus 20 s~v~~a~--~~~~~g~~LDlgcG~GRNalyLA~~G~~VtAvD~s~~al~~l~~~a~~~~l~i~~~~~Dl~~~~~~~~yD~ 97 (192)
T PF03848_consen 20 SEVLEAV--PLLKPGKALDLGCGEGRNALYLASQGFDVTAVDISPVALEKLQRLAEEEGLDIRTRVADLNDFDFPEEYDF 97 (192)
T ss_dssp HHHHHHC--TTS-SSEEEEES-TTSHHHHHHHHTT-EEEEEESSHHHHHHHHHHHHHTT-TEEEEE-BGCCBS-TTTEEE
T ss_pred HHHHHHH--hhcCCCcEEEcCCCCcHHHHHHHHCCCeEEEEECCHHHHHHHHHHHhhcCceeEEEEecchhccccCCcCE
Confidence 5677777 455678999999 556778999998653 33221 133488889998753 444 577
Q ss_pred EeccccchhhhHHhhhhhhhhcCCCccchhhhhhcccccceeeeeeccCChHHHHHHHHHHHHHhccCC-----------
Q 036440 77 IPLRLGYSHIKIMIAFFIRLVVGRGRLHIFSWLNFMKRVINMQIIIHVFGDEESVKILKICREAITSKA----------- 145 (181)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~iLHdw~D~~~~~iL~~~~~a~~~~g----------- 145 (181)
+ +...++|-.+.+...+|+++..+++.|||
T Consensus 98 I---------------------------------------~st~v~~fL~~~~~~~i~~~m~~~~~pGG~~li~~~~~~~ 138 (192)
T PF03848_consen 98 I---------------------------------------VSTVVFMFLQRELRPQIIENMKAATKPGGYNLIVTFMETP 138 (192)
T ss_dssp E---------------------------------------EEESSGGGS-GGGHHHHHHHHHHTEEEEEEEEEEEEB--S
T ss_pred E---------------------------------------EEEEEeccCCHHHHHHHHHHHHhhcCCcEEEEEEEecccC
Confidence 7 66677888888999999999999999999
Q ss_pred ---------ccCCHHHHHHHHHhCCCeEEEEE
Q 036440 146 ---------KLSTEKELESLFVEVHFHHYKIT 168 (181)
Q Consensus 146 ---------~eRt~~E~~~Ll~~aGf~~~~i~ 168 (181)
-.....|+...++ ||++.+..
T Consensus 139 d~p~~~~~~f~~~~~EL~~~y~--dW~il~y~ 168 (192)
T PF03848_consen 139 DYPCPSPFPFLLKPGELREYYA--DWEILKYN 168 (192)
T ss_dssp SS--SS--S--B-TTHHHHHTT--TSEEEEEE
T ss_pred CCCCCCCCCcccCHHHHHHHhC--CCeEEEEE
Confidence 3344567777665 68776643
|
When present in high copy number, TehB is responsible for potassium tellurite resistance, probably by increasing the reduction rate of tellurite to metallic tellurium within the bacterium. TehB is a cytoplasmic protein which possesses three conserved motifs (I, II, and III) found in S-adenosyl-L-methionine (SAM)-dependent non-nucleic acid methyltransferases []. Conformational changes in TehB are observed upon binding of both tellurite and SAM, suggesting that TehB utilises a methyltransferase activity in the detoxification of tellurite. This entry represents the methyltransferase domain found in all TehB proteins.; PDB: 2KW5_A 3MER_B 3M70_A 2I6G_A 4DQ0_D 2XVA_B 2XVM_A. |
| >COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=93.78 E-value=0.92 Score=38.30 Aligned_cols=98 Identities=16% Similarity=0.177 Sum_probs=71.0
Q ss_pred hcCCCeEEEec------------CCCCceEEEeec-hhhhhhhc------cCCCceEEecCCCCC---CCCcceEecccc
Q 036440 25 FERLGSLVDVG------------AFPCVKCTEFDQ-PHVVANLL------DTNNLKYLADDFFQS---IPPVCMIPLRLG 82 (181)
Q Consensus 25 ~~~~~~lvDvG------------~~P~l~~~~~Dl-P~Vv~~a~------~~~ri~~~~gDff~~---~P~~d~~~~~~~ 82 (181)
...-..++||| ..|..|.+.+|. |..++... .-++++.++||.-+. +|..|.+
T Consensus 32 ~~~g~~l~DIGaGtGsi~iE~a~~~p~~~v~AIe~~~~a~~~~~~N~~~fg~~n~~vv~g~Ap~~L~~~~~~dai----- 106 (187)
T COG2242 32 PRPGDRLWDIGAGTGSITIEWALAGPSGRVIAIERDEEALELIERNAARFGVDNLEVVEGDAPEALPDLPSPDAI----- 106 (187)
T ss_pred CCCCCEEEEeCCCccHHHHHHHHhCCCceEEEEecCHHHHHHHHHHHHHhCCCcEEEEeccchHhhcCCCCCCEE-----
Confidence 34457999999 599999999997 34443322 178999999998754 4557887
Q ss_pred chhhhHHhhhhhhhhcCCCccchhhhhhcccccceeeeeeccCChHHHHHHHHHHHHHhccCC-------ccCCHHHHHH
Q 036440 83 YSHIKIMIAFFIRLVVGRGRLHIFSWLNFMKRVINMQIIIHVFGDEESVKILKICREAITSKA-------KLSTEKELES 155 (181)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~iLHdw~D~~~~~iL~~~~~a~~~~g-------~eRt~~E~~~ 155 (181)
++. .-..--.||+.|-+.++|+| ..=|....-+
T Consensus 107 ----------------------------------FIG------Gg~~i~~ile~~~~~l~~ggrlV~naitlE~~~~a~~ 146 (187)
T COG2242 107 ----------------------------------FIG------GGGNIEEILEAAWERLKPGGRLVANAITLETLAKALE 146 (187)
T ss_pred ----------------------------------EEC------CCCCHHHHHHHHHHHcCcCCeEEEEeecHHHHHHHHH
Confidence 333 12445579999999999999 4455666677
Q ss_pred HHHhCCC-eEEEE
Q 036440 156 LFVEVHF-HHYKI 167 (181)
Q Consensus 156 Ll~~aGf-~~~~i 167 (181)
.+++.|+ .++++
T Consensus 147 ~~~~~g~~ei~~v 159 (187)
T COG2242 147 ALEQLGGREIVQV 159 (187)
T ss_pred HHHHcCCceEEEE
Confidence 7889999 55555
|
|
| >PLN02672 methionine S-methyltransferase | Back alignment and domain information |
|---|
Probab=93.65 E-value=0.62 Score=48.27 Aligned_cols=40 Identities=13% Similarity=0.053 Sum_probs=33.1
Q ss_pred HHHHHHHHHHhccCC------ccCCHHHHH-HHHHhCCCeEEEEEEc
Q 036440 131 VKILKICREAITSKA------KLSTEKELE-SLFVEVHFHHYKITPL 170 (181)
Q Consensus 131 ~~iL~~~~~a~~~~g------~eRt~~E~~-~Ll~~aGf~~~~i~~~ 170 (181)
++|++.+...++|+| -.+--+... +++++.||+.+++|..
T Consensus 258 r~i~~~a~~~L~pgG~l~lEiG~~q~~~v~~~l~~~~gf~~~~~~~~ 304 (1082)
T PLN02672 258 ARAVEEGISVIKPMGIMIFNMGGRPGQAVCERLFERRGFRITKLWQT 304 (1082)
T ss_pred HHHHHHHHHhccCCCEEEEEECccHHHHHHHHHHHHCCCCeeEEeee
Confidence 578888888999999 555566788 6999999999988854
|
|
| >PLN02366 spermidine synthase | Back alignment and domain information |
|---|
Probab=93.60 E-value=0.67 Score=41.28 Aligned_cols=52 Identities=13% Similarity=0.098 Sum_probs=38.1
Q ss_pred cCCCeEEEec-----------CCCCc-eEEEeechh-hhhhhcc----------CCCceEEecCCC---CCCCC--cceE
Q 036440 26 ERLGSLVDVG-----------AFPCV-KCTEFDQPH-VVANLLD----------TNNLKYLADDFF---QSIPP--VCMI 77 (181)
Q Consensus 26 ~~~~~lvDvG-----------~~P~l-~~~~~DlP~-Vv~~a~~----------~~ri~~~~gDff---~~~P~--~d~~ 77 (181)
.+.++||||| +||.+ +.+++|+.. |++.++. .+|++++.+|.+ +..|. .|++
T Consensus 90 ~~pkrVLiIGgG~G~~~rellk~~~v~~V~~VEiD~~Vi~~ar~~f~~~~~~~~dpRv~vi~~Da~~~l~~~~~~~yDvI 169 (308)
T PLN02366 90 PNPKKVLVVGGGDGGVLREIARHSSVEQIDICEIDKMVIDVSKKFFPDLAVGFDDPRVNLHIGDGVEFLKNAPEGTYDAI 169 (308)
T ss_pred CCCCeEEEEcCCccHHHHHHHhCCCCCeEEEEECCHHHHHHHHHhhhhhccccCCCceEEEEChHHHHHhhccCCCCCEE
Confidence 4678999999 88875 688899854 6665532 579999999975 34442 5777
|
|
| >PRK00811 spermidine synthase; Provisional | Back alignment and domain information |
|---|
Probab=93.54 E-value=0.38 Score=41.83 Aligned_cols=51 Identities=18% Similarity=0.191 Sum_probs=37.0
Q ss_pred CCCeEEEec-----------CCCC-ceEEEeec-hhhhhhhc-----------cCCCceEEecCCCCCCC----CcceE
Q 036440 27 RLGSLVDVG-----------AFPC-VKCTEFDQ-PHVVANLL-----------DTNNLKYLADDFFQSIP----PVCMI 77 (181)
Q Consensus 27 ~~~~lvDvG-----------~~P~-l~~~~~Dl-P~Vv~~a~-----------~~~ri~~~~gDff~~~P----~~d~~ 77 (181)
..++|||+| ++|. .+.+.+|+ |.+++.++ ..+|++++.+|..+-++ ..|++
T Consensus 76 ~p~~VL~iG~G~G~~~~~~l~~~~~~~V~~VEid~~vv~~a~~~~~~~~~~~~~d~rv~v~~~Da~~~l~~~~~~yDvI 154 (283)
T PRK00811 76 NPKRVLIIGGGDGGTLREVLKHPSVEKITLVEIDERVVEVCRKYLPEIAGGAYDDPRVELVIGDGIKFVAETENSFDVI 154 (283)
T ss_pred CCCEEEEEecCchHHHHHHHcCCCCCEEEEEeCCHHHHHHHHHHhHHhccccccCCceEEEECchHHHHhhCCCcccEE
Confidence 567999999 7765 47899998 56766553 25799999999875332 25777
|
|
| >COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=93.04 E-value=0.19 Score=44.04 Aligned_cols=101 Identities=17% Similarity=0.191 Sum_probs=71.4
Q ss_pred CeEEEec----------CCCCceEEEeech-hhhhhhcc---CC--CceEEecCCCCC-CC--CcceEeccccchhhhHH
Q 036440 29 GSLVDVG----------AFPCVKCTEFDQP-HVVANLLD---TN--NLKYLADDFFQS-IP--PVCMIPLRLGYSHIKIM 89 (181)
Q Consensus 29 ~~lvDvG----------~~P~l~~~~~DlP-~Vv~~a~~---~~--ri~~~~gDff~~-~P--~~d~~~~~~~~~~~~~~ 89 (181)
.+||||| |--+.+.+..|.- .-++.++. .. .|.|....-.+- .. ..|++
T Consensus 61 ~~vLDvGCGgG~Lse~mAr~Ga~VtgiD~se~~I~~Ak~ha~e~gv~i~y~~~~~edl~~~~~~FDvV------------ 128 (243)
T COG2227 61 LRVLDVGCGGGILSEPLARLGASVTGIDASEKPIEVAKLHALESGVNIDYRQATVEDLASAGGQFDVV------------ 128 (243)
T ss_pred CeEEEecCCccHhhHHHHHCCCeeEEecCChHHHHHHHHhhhhccccccchhhhHHHHHhcCCCccEE------------
Confidence 4799999 5556888999984 45665553 22 233444433321 11 25666
Q ss_pred hhhhhhhhcCCCccchhhhhhcccccceeeeeeccCChHHHHHHHHHHHHHhccCC------------------------
Q 036440 90 IAFFIRLVVGRGRLHIFSWLNFMKRVINMQIIIHVFGDEESVKILKICREAITSKA------------------------ 145 (181)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~iLHdw~D~~~~~iL~~~~~a~~~~g------------------------ 145 (181)
.--.+|+.-+|.+. ++++|.+.++|+|
T Consensus 129 ---------------------------~cmEVlEHv~dp~~--~~~~c~~lvkP~G~lf~STinrt~ka~~~~i~~ae~v 179 (243)
T COG2227 129 ---------------------------TCMEVLEHVPDPES--FLRACAKLVKPGGILFLSTINRTLKAYLLAIIGAEYV 179 (243)
T ss_pred ---------------------------EEhhHHHccCCHHH--HHHHHHHHcCCCcEEEEeccccCHHHHHHHHHHHHHH
Confidence 55666677777776 9999999999999
Q ss_pred ------------ccCCHHHHHHHHHhCCCeEEEEEEc
Q 036440 146 ------------KLSTEKELESLFVEVHFHHYKITPL 170 (181)
Q Consensus 146 ------------~eRt~~E~~~Ll~~aGf~~~~i~~~ 170 (181)
|-...+|...++.++|++......+
T Consensus 180 l~~vP~gTH~~~k~irp~El~~~~~~~~~~~~~~~g~ 216 (243)
T COG2227 180 LRIVPKGTHDYRKFIKPAELIRWLLGANLKIIDRKGL 216 (243)
T ss_pred HHhcCCcchhHHHhcCHHHHHHhcccCCceEEeecce
Confidence 8888999999999999988777654
|
|
| >PRK14967 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=92.88 E-value=2.4 Score=35.00 Aligned_cols=118 Identities=7% Similarity=-0.040 Sum_probs=66.5
Q ss_pred hcCCCeEEEec-----------CCCCceEEEeech-hhhhhhcc-----CCCceEEecCCCCCCCC--cceEeccccchh
Q 036440 25 FERLGSLVDVG-----------AFPCVKCTEFDQP-HVVANLLD-----TNNLKYLADDFFQSIPP--VCMIPLRLGYSH 85 (181)
Q Consensus 25 ~~~~~~lvDvG-----------~~P~l~~~~~DlP-~Vv~~a~~-----~~ri~~~~gDff~~~P~--~d~~~~~~~~~~ 85 (181)
...-.+++|+| +.+..+.+.+|.. ..++.+.. .-+++++.+|+.+.+|. .|++..+..|..
T Consensus 34 ~~~~~~vLDlGcG~G~~~~~la~~~~~~v~~vD~s~~~l~~a~~n~~~~~~~~~~~~~d~~~~~~~~~fD~Vi~npPy~~ 113 (223)
T PRK14967 34 LGPGRRVLDLCTGSGALAVAAAAAGAGSVTAVDISRRAVRSARLNALLAGVDVDVRRGDWARAVEFRPFDVVVSNPPYVP 113 (223)
T ss_pred cCCCCeEEEecCCHHHHHHHHHHcCCCeEEEEECCHHHHHHHHHHHHHhCCeeEEEECchhhhccCCCeeEEEECCCCCC
Confidence 44457999999 3344478999985 44543321 23688999999876653 588854443211
Q ss_pred hhHHhhhhhhhhcCCCccchhhhhhcccccceeeeeeccCC-----hHHHHHHHHHHHHHhccCC------ccC-CHHHH
Q 036440 86 IKIMIAFFIRLVVGRGRLHIFSWLNFMKRVINMQIIIHVFG-----DEESVKILKICREAITSKA------KLS-TEKEL 153 (181)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~iLHdw~-----D~~~~~iL~~~~~a~~~~g------~eR-t~~E~ 153 (181)
..-+ +. .-+...+.|+ .+...++++.+...++++| .+. +.+++
T Consensus 114 ~~~~---------~~----------------~~~~~~~~~~~~~~~~~~~~~~l~~a~~~Lk~gG~l~~~~~~~~~~~~~ 168 (223)
T PRK14967 114 APPD---------AP----------------PSRGPARAWDAGPDGRAVLDRLCDAAPALLAPGGSLLLVQSELSGVERT 168 (223)
T ss_pred CCcc---------cc----------------cccChhHhhhCCCcHHHHHHHHHHHHHHhcCCCcEEEEEEecccCHHHH
Confidence 0000 00 0000000111 1123457777888888888 222 55678
Q ss_pred HHHHHhCCCeEEEE
Q 036440 154 ESLFVEVHFHHYKI 167 (181)
Q Consensus 154 ~~Ll~~aGf~~~~i 167 (181)
.+++++.||....+
T Consensus 169 ~~~l~~~g~~~~~~ 182 (223)
T PRK14967 169 LTRLSEAGLDAEVV 182 (223)
T ss_pred HHHHHHCCCCeEEE
Confidence 88888888865444
|
|
| >PF06325 PrmA: Ribosomal protein L11 methyltransferase (PrmA); InterPro: IPR010456 This family consists of several Ribosomal protein L11 methyltransferase sequences | Back alignment and domain information |
|---|
Probab=92.87 E-value=0.79 Score=40.76 Aligned_cols=50 Identities=8% Similarity=0.019 Sum_probs=36.5
Q ss_pred hHHHHHHHHHHHHHhccCC-------ccCCHHHHHHHHHhCCCeEEEEEEcCCCCeEE
Q 036440 127 DEESVKILKICREAITSKA-------KLSTEKELESLFVEVHFHHYKITPLFGLPSLI 177 (181)
Q Consensus 127 D~~~~~iL~~~~~a~~~~g-------~eRt~~E~~~Ll~~aGf~~~~i~~~~~~~~vi 177 (181)
.+--..+...+...++|+| ..-..++..+.+++ ||+..+.....+..+++
T Consensus 235 ~~vL~~l~~~~~~~l~~~G~lIlSGIl~~~~~~v~~a~~~-g~~~~~~~~~~~W~~l~ 291 (295)
T PF06325_consen 235 ADVLLELAPDIASLLKPGGYLILSGILEEQEDEVIEAYKQ-GFELVEEREEGEWVALV 291 (295)
T ss_dssp HHHHHHHHHHCHHHEEEEEEEEEEEEEGGGHHHHHHHHHT-TEEEEEEEEETTEEEEE
T ss_pred HHHHHHHHHHHHHhhCCCCEEEEccccHHHHHHHHHHHHC-CCEEEEEEEECCEEEEE
Confidence 4455667777788888888 44455788888877 99999888777665544
|
Its genetic determinant is prmA, which forms a bifunctional operon with the downstream panF gene []. The role of L11 methylation in ribosome function is, as yet, unknown. Deletion of the prmA gene in Escherichia coli showed no obvious effect [] except for the production of undermethylated forms of L11 []. Methylation is the most common post-transcriptional modification to ribosomal proteins in all organisms. PrmA is the only bacterial enzyme that catalyses the methylation of a ribosomal protein [].; GO: 0008276 protein methyltransferase activity, 0006479 protein methylation, 0005737 cytoplasm; PDB: 3GRZ_B 1F3L_A 2NXJ_B 3CJT_I 3CJQ_G 2NXE_A 2NXC_A 2ZBP_A 3EGV_A 3CJS_A .... |
| >PF01739 CheR: CheR methyltransferase, SAM binding domain; InterPro: IPR022642 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=92.72 E-value=0.1 Score=43.63 Aligned_cols=50 Identities=12% Similarity=0.318 Sum_probs=38.6
Q ss_pred CCCceEEecCCCCCCCC---cceEeccccchhhhHHhhhhhhhhcCCCccchhhhhhcccccceeeeeeccCChHHHHHH
Q 036440 57 TNNLKYLADDFFQSIPP---VCMIPLRLGYSHIKIMIAFFIRLVVGRGRLHIFSWLNFMKRVINMQIIIHVFGDEESVKI 133 (181)
Q Consensus 57 ~~ri~~~~gDff~~~P~---~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~iLHdw~D~~~~~i 133 (181)
..+|+|..+|.++..|. -|++ +.++||-.++++...+|
T Consensus 117 r~~V~F~~~NL~~~~~~~~~fD~I---------------------------------------~CRNVlIYF~~~~~~~v 157 (196)
T PF01739_consen 117 RKMVRFRRHNLLDPDPPFGRFDLI---------------------------------------FCRNVLIYFDPETQQRV 157 (196)
T ss_dssp HTTEEEEE--TT-S------EEEE---------------------------------------EE-SSGGGS-HHHHHHH
T ss_pred cCceEEEecccCCCCcccCCccEE---------------------------------------EecCEEEEeCHHHHHHH
Confidence 46899999999983332 5888 99999999999999999
Q ss_pred HHHHHHHhccCC
Q 036440 134 LKICREAITSKA 145 (181)
Q Consensus 134 L~~~~~a~~~~g 145 (181)
+++++.+|+|||
T Consensus 158 l~~l~~~L~pgG 169 (196)
T PF01739_consen 158 LRRLHRSLKPGG 169 (196)
T ss_dssp HHHHGGGEEEEE
T ss_pred HHHHHHHcCCCC
Confidence 999999999999
|
The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Flagellated bacteria swim towards favourable chemicals and away from deleterious ones. Sensing of chemoeffector gradients involves chemotaxis receptors, transmembrane (TM) proteins that detect stimuli through their periplasmic domains and transduce the signals via their cytoplasmic domains []. Signalling outputs from these receptors are influenced both by the binding of the chemoeffector ligand to their periplasmic domains and by methylation of specific glutamate residues on their cytoplasmic domains. Methylation is catalysed by CheR, an S-adenosylmethionine-dependent methyltransferase [], which reversibly methylates specific glutamate residues within a coiled coil region, to form gamma-glutamyl methyl ester residues [, ]. The structure of the Salmonella typhimurium chemotaxis receptor methyltransferase CheR, bound to S-adenosylhomocysteine, has been determined to a resolution of 2.0 A []. The structure reveals CheR to be a two-domain protein, with a smaller N-terminal helical domain linked via a single polypeptide connection to a larger C-terminal alpha/beta domain. The C-terminal domain has the characteristics of a nucleotide-binding fold, with an insertion of a small anti-parallel beta-sheet subdomain. The S-adenosylhomocysteine-binding site is formed mainly by the large domain, with contributions from residues within the N-terminal domain and the linker region []. CheR proteins are part of the chemotaxis signaling mechanism which methylates the chemotaxis receptor at specific glutamate residues. This entry refers to the C-terminal SAM-binding domain of the CherR-type MCP methyltransferases, which are found in bacteria, archaea and green plants. This entry is found in association with PF03705 from PFAM. ; PDB: 1AF7_A 1BC5_A. |
| >KOG2361 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=92.34 E-value=0.7 Score=40.91 Aligned_cols=51 Identities=20% Similarity=0.373 Sum_probs=43.7
Q ss_pred eeeeeeccCChHHHHHHHHHHHHHhccCC------------------------------------ccCCHHHHHHHHHhC
Q 036440 117 NMQIIIHVFGDEESVKILKICREAITSKA------------------------------------KLSTEKELESLFVEV 160 (181)
Q Consensus 117 ~l~~iLHdw~D~~~~~iL~~~~~a~~~~g------------------------------------~eRt~~E~~~Ll~~a 160 (181)
.|-.+|---..+.-.+.++|+++.++||| .--|.+|+++|+.+|
T Consensus 149 t~IFvLSAi~pek~~~a~~nl~~llKPGG~llfrDYg~~DlaqlRF~~~~~i~~nfYVRgDGT~~YfF~~eeL~~~f~~a 228 (264)
T KOG2361|consen 149 TLIFVLSAIHPEKMQSVIKNLRTLLKPGGSLLFRDYGRYDLAQLRFKKGQCISENFYVRGDGTRAYFFTEEELDELFTKA 228 (264)
T ss_pred EEEEEEeccChHHHHHHHHHHHHHhCCCcEEEEeecccchHHHHhccCCceeecceEEccCCceeeeccHHHHHHHHHhc
Confidence 56666666778999999999999999999 345899999999999
Q ss_pred CCeEEEE
Q 036440 161 HFHHYKI 167 (181)
Q Consensus 161 Gf~~~~i 167 (181)
||..++.
T Consensus 229 gf~~~~~ 235 (264)
T KOG2361|consen 229 GFEEVQL 235 (264)
T ss_pred ccchhcc
Confidence 9988765
|
|
| >COG2890 HemK Methylase of polypeptide chain release factors [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=92.28 E-value=3.3 Score=36.24 Aligned_cols=129 Identities=18% Similarity=0.223 Sum_probs=75.9
Q ss_pred eEEEec------------CCCCceEEEeec-hhhhhhhcc-----C-CCceEEecCCCCCCCC-cceEeccccchhhhHH
Q 036440 30 SLVDVG------------AFPCVKCTEFDQ-PHVVANLLD-----T-NNLKYLADDFFQSIPP-VCMIPLRLGYSHIKIM 89 (181)
Q Consensus 30 ~lvDvG------------~~P~l~~~~~Dl-P~Vv~~a~~-----~-~ri~~~~gDff~~~P~-~d~~~~~~~~~~~~~~ 89 (181)
+++|+| +.|+.+.+..|+ |..++.|.. . .|+..+.+|+|+.++. .|++.-+==| +.-.
T Consensus 113 ~ilDlGTGSG~iai~la~~~~~~~V~a~Dis~~Al~~A~~Na~~~~l~~~~~~~~dlf~~~~~~fDlIVsNPPY--ip~~ 190 (280)
T COG2890 113 RILDLGTGSGAIAIALAKEGPDAEVIAVDISPDALALARENAERNGLVRVLVVQSDLFEPLRGKFDLIVSNPPY--IPAE 190 (280)
T ss_pred cEEEecCChHHHHHHHHhhCcCCeEEEEECCHHHHHHHHHHHHHcCCccEEEEeeecccccCCceeEEEeCCCC--CCCc
Confidence 799999 899999999998 566654431 2 5667777799998875 6877222211 1110
Q ss_pred hhhhhhhhcC--CCccchhhhhhcccccceeeeeeccC-ChHHHHHHHHHHHHHhccCC------ccCCHHHHHHHHHhC
Q 036440 90 IAFFIRLVVG--RGRLHIFSWLNFMKRVINMQIIIHVF-GDEESVKILKICREAITSKA------KLSTEKELESLFVEV 160 (181)
Q Consensus 90 ~~~~~~~~~~--~~~~~~~~~~~~~~~~~~l~~iLHdw-~D~~~~~iL~~~~~a~~~~g------~eRt~~E~~~Ll~~a 160 (181)
.. ...++ ++.-+.- .+..- +-+--.+|+......+.++| ..-..++.++++.+.
T Consensus 191 ~~---~~~~~~~~~EP~~A--------------l~~g~dGl~~~~~i~~~a~~~l~~~g~l~le~g~~q~~~v~~~~~~~ 253 (280)
T COG2890 191 DP---ELLPEVVRYEPLLA--------------LVGGGDGLEVYRRILGEAPDILKPGGVLILEIGLTQGEAVKALFEDT 253 (280)
T ss_pred cc---ccChhhhccCHHHH--------------HccCccHHHHHHHHHHhhHHHcCCCcEEEEEECCCcHHHHHHHHHhc
Confidence 00 00000 0000000 00011 11234478888888999988 445678899999999
Q ss_pred C-CeEEEEEEc-CCCCeEE
Q 036440 161 H-FHHYKITPL-FGLPSLI 177 (181)
Q Consensus 161 G-f~~~~i~~~-~~~~~vi 177 (181)
| |..+.+.+- .+..-++
T Consensus 254 ~~~~~v~~~~d~~g~~rv~ 272 (280)
T COG2890 254 GFFEIVETLKDLFGRDRVV 272 (280)
T ss_pred CCceEEEEEecCCCceEEE
Confidence 9 776666654 4444444
|
|
| >PF08003 Methyltransf_9: Protein of unknown function (DUF1698); InterPro: IPR010017 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=92.28 E-value=1.9 Score=39.19 Aligned_cols=52 Identities=12% Similarity=0.224 Sum_probs=40.5
Q ss_pred ceeeeeeccCChHHHHHHHHHHHHHhccCC------------------------------ccCCHHHHHHHHHhCCCeEE
Q 036440 116 INMQIIIHVFGDEESVKILKICREAITSKA------------------------------KLSTEKELESLFVEVHFHHY 165 (181)
Q Consensus 116 ~~l~~iLHdw~D~~~~~iL~~~~~a~~~~g------------------------------~eRt~~E~~~Ll~~aGf~~~ 165 (181)
+.|..+-|.=+.-+ .|+.++.++.+|| -..|..-++.+|+++||+.+
T Consensus 187 F~MGVLYHrr~Pl~---~L~~Lk~~L~~gGeLvLETlvi~g~~~~~L~P~~rYa~m~nv~FiPs~~~L~~wl~r~gF~~v 263 (315)
T PF08003_consen 187 FSMGVLYHRRSPLD---HLKQLKDSLRPGGELVLETLVIDGDENTVLVPEDRYAKMRNVWFIPSVAALKNWLERAGFKDV 263 (315)
T ss_pred EEeeehhccCCHHH---HHHHHHHhhCCCCEEEEEEeeecCCCceEEccCCcccCCCceEEeCCHHHHHHHHHHcCCceE
Confidence 46666667666655 4566678888888 45689999999999999999
Q ss_pred EEEEc
Q 036440 166 KITPL 170 (181)
Q Consensus 166 ~i~~~ 170 (181)
++...
T Consensus 264 ~~v~~ 268 (315)
T PF08003_consen 264 RCVDV 268 (315)
T ss_pred EEecC
Confidence 99754
|
The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This entry represents a set of bacterial AdoMet-dependent tRNA (mo5U34)-methyltransferases. These enzymes catalyse the conversion of 5-hydroxyuridine (ho5U) to 5-methoxyuridine (mo5U) at the wobble position (34) of tRNA []. The 5-methoxyuridine is subsequently converted to uridine-5-oxyacetic acid, a modified nucleoside that is apparently necessary for the efficient decoding of G-ending Pro, Ala, and Val codons in these organisms [].; GO: 0016300 tRNA (uracil) methyltransferase activity, 0002098 tRNA wobble uridine modification |
| >COG2264 PrmA Ribosomal protein L11 methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=92.25 E-value=1.3 Score=39.81 Aligned_cols=50 Identities=6% Similarity=0.051 Sum_probs=37.7
Q ss_pred hHHHHHHHHHHHHHhccCC-------ccCCHHHHHHHHHhCCCeEEEEEEcCCCCeE
Q 036440 127 DEESVKILKICREAITSKA-------KLSTEKELESLFVEVHFHHYKITPLFGLPSL 176 (181)
Q Consensus 127 D~~~~~iL~~~~~a~~~~g-------~eRt~~E~~~Ll~~aGf~~~~i~~~~~~~~v 176 (181)
-+--+++...+...++|+| -..-.+...+-++++||.++++....+...+
T Consensus 239 A~vl~~La~~~~~~lkpgg~lIlSGIl~~q~~~V~~a~~~~gf~v~~~~~~~eW~~i 295 (300)
T COG2264 239 AEVLVELAPDIKRLLKPGGRLILSGILEDQAESVAEAYEQAGFEVVEVLEREEWVAI 295 (300)
T ss_pred HHHHHHHHHHHHHHcCCCceEEEEeehHhHHHHHHHHHHhCCCeEeEEEecCCEEEE
Confidence 4455677888888999998 2333778888899999999998876665443
|
|
| >TIGR03439 methyl_EasF probable methyltransferase domain, EasF family | Back alignment and domain information |
|---|
Probab=92.18 E-value=0.45 Score=42.73 Aligned_cols=31 Identities=16% Similarity=0.173 Sum_probs=28.5
Q ss_pred cceeeeeeccCChHHHHHHHHHHHH-HhccCC
Q 036440 115 VINMQIIIHVFGDEESVKILKICRE-AITSKA 145 (181)
Q Consensus 115 ~~~l~~iLHdw~D~~~~~iL~~~~~-a~~~~g 145 (181)
++++...+.++.++++...|++++. .|.|++
T Consensus 160 ~~flGSsiGNf~~~ea~~fL~~~~~~~l~~~d 191 (319)
T TIGR03439 160 ILWLGSSIGNFSRPEAAAFLAGFLATALSPSD 191 (319)
T ss_pred EEEeCccccCCCHHHHHHHHHHHHHhhCCCCC
Confidence 4488999999999999999999999 999987
|
This model represents an uncharacterized domain of about 300 amino acids with homology to S-adenosylmethionine-dependent methyltransferases. Proteins with this domain are exclusively fungal. A few, such as EasF from Neotyphodium lolii, are associated with the biosynthesis of ergot alkaloids, a class of fungal secondary metabolites. EasF may, in fact, be the AdoMet:dimethylallyltryptophan N-methyltransferase, the enzyme that follows tryptophan dimethylallyltransferase (DMATS) in ergot alkaloid biosynthesis. Several other members of this family, including mug158 (meiotically up-regulated gene 158 protein) from Schizosaccharomyces pombe, contain an additional uncharacterized domain DUF323 (pfam03781). |
| >KOG2899 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=91.81 E-value=1.3 Score=39.51 Aligned_cols=27 Identities=11% Similarity=0.204 Sum_probs=23.6
Q ss_pred eeeeccCChHHHHHHHHHHHHHhccCC
Q 036440 119 QIIIHVFGDEESVKILKICREAITSKA 145 (181)
Q Consensus 119 ~~iLHdw~D~~~~~iL~~~~~a~~~~g 145 (181)
++|=-+|.|+.-++.++++..-+.|||
T Consensus 177 kWIHLNwgD~GL~~ff~kis~ll~pgG 203 (288)
T KOG2899|consen 177 KWIHLNWGDDGLRRFFRKISSLLHPGG 203 (288)
T ss_pred eeEecccccHHHHHHHHHHHHhhCcCc
Confidence 344448999999999999999999999
|
|
| >PRK10611 chemotaxis methyltransferase CheR; Provisional | Back alignment and domain information |
|---|
Probab=91.61 E-value=0.25 Score=43.78 Aligned_cols=50 Identities=10% Similarity=0.143 Sum_probs=44.0
Q ss_pred CCCceEEecCCCC-CCCC---cceEeccccchhhhHHhhhhhhhhcCCCccchhhhhhcccccceeeeeeccCChHHHHH
Q 036440 57 TNNLKYLADDFFQ-SIPP---VCMIPLRLGYSHIKIMIAFFIRLVVGRGRLHIFSWLNFMKRVINMQIIIHVFGDEESVK 132 (181)
Q Consensus 57 ~~ri~~~~gDff~-~~P~---~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~iLHdw~D~~~~~ 132 (181)
..+|+|..+|.++ +.|. -|++ +.+++|..++++...+
T Consensus 203 r~~V~F~~~NL~~~~~~~~~~fD~I---------------------------------------~cRNvliyF~~~~~~~ 243 (287)
T PRK10611 203 ANYVDFQQLNLLAKQWAVPGPFDAI---------------------------------------FCRNVMIYFDKTTQER 243 (287)
T ss_pred HccCEEEcccCCCCCCccCCCccee---------------------------------------eHhhHHhcCCHHHHHH
Confidence 4788999999997 3442 5888 8999999999999999
Q ss_pred HHHHHHHHhccCC
Q 036440 133 ILKICREAITSKA 145 (181)
Q Consensus 133 iL~~~~~a~~~~g 145 (181)
++++++.+++|||
T Consensus 244 vl~~l~~~L~pgG 256 (287)
T PRK10611 244 ILRRFVPLLKPDG 256 (287)
T ss_pred HHHHHHHHhCCCc
Confidence 9999999999999
|
|
| >KOG1270 consensus Methyltransferases [Coenzyme transport and metabolism] | Back alignment and domain information |
|---|
Probab=90.71 E-value=0.5 Score=42.23 Aligned_cols=99 Identities=16% Similarity=0.156 Sum_probs=67.5
Q ss_pred CeEEEec----------CCCCceEEEeec-hhhhhhhcc--------CC----CceEEecCCCCCCCCcceEeccccchh
Q 036440 29 GSLVDVG----------AFPCVKCTEFDQ-PHVVANLLD--------TN----NLKYLADDFFQSIPPVCMIPLRLGYSH 85 (181)
Q Consensus 29 ~~lvDvG----------~~P~l~~~~~Dl-P~Vv~~a~~--------~~----ri~~~~gDff~~~P~~d~~~~~~~~~~ 85 (181)
.++|||| +-=+...+..|. +..|+.|+. .. |+++...|.=...+..|++
T Consensus 91 ~~ilDvGCGgGLLSepLArlga~V~GID~s~~~V~vA~~h~~~dP~~~~~~~y~l~~~~~~~E~~~~~fDaV-------- 162 (282)
T KOG1270|consen 91 MKILDVGCGGGLLSEPLARLGAQVTGIDASDDMVEVANEHKKMDPVLEGAIAYRLEYEDTDVEGLTGKFDAV-------- 162 (282)
T ss_pred ceEEEeccCccccchhhHhhCCeeEeecccHHHHHHHHHhhhcCchhccccceeeehhhcchhhccccccee--------
Confidence 5699999 333567889998 456666642 22 5777666665555667877
Q ss_pred hhHHhhhhhhhhcCCCccchhhhhhcccccceeeeeeccCChHHHHHHHHHHHHHhccCC--------------------
Q 036440 86 IKIMIAFFIRLVVGRGRLHIFSWLNFMKRVINMQIIIHVFGDEESVKILKICREAITSKA-------------------- 145 (181)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~iLHdw~D~~~~~iL~~~~~a~~~~g-------------------- 145 (181)
...-+||.-.|- ..+|+.+.+.++|+|
T Consensus 163 -------------------------------vcsevleHV~dp--~~~l~~l~~~lkP~G~lfittinrt~lS~~~~i~~ 209 (282)
T KOG1270|consen 163 -------------------------------VCSEVLEHVKDP--QEFLNCLSALLKPNGRLFITTINRTILSFAGTIFL 209 (282)
T ss_pred -------------------------------eeHHHHHHHhCH--HHHHHHHHHHhCCCCceEeeehhhhHHHhhccccH
Confidence 444455443332 346666666667766
Q ss_pred ----------------ccCCHHHHHHHHHhCCCeEEEEE
Q 036440 146 ----------------KLSTEKELESLFVEVHFHHYKIT 168 (181)
Q Consensus 146 ----------------~eRt~~E~~~Ll~~aGf~~~~i~ 168 (181)
+-.+.+|..+++.++|+.+..+.
T Consensus 210 ~E~vl~ivp~Gth~~ekfi~p~e~~~~l~~~~~~v~~v~ 248 (282)
T KOG1270|consen 210 AEIVLRIVPKGTHTWEKFINPEELTSILNANGAQVNDVV 248 (282)
T ss_pred HHHHHHhcCCCCcCHHHcCCHHHHHHHHHhcCcchhhhh
Confidence 78899999999999999877664
|
|
| >PRK13942 protein-L-isoaspartate O-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=90.57 E-value=2 Score=35.56 Aligned_cols=60 Identities=10% Similarity=0.097 Sum_probs=40.8
Q ss_pred HHHHHhhhhhcCCCeEEEec-------------CCCCceEEEeec-hhhhhhhcc------CCCceEEecCCCCCCCC--
Q 036440 16 LALKYCKQIFERLGSLVDVG-------------AFPCVKCTEFDQ-PHVVANLLD------TNNLKYLADDFFQSIPP-- 73 (181)
Q Consensus 16 ~~l~~~~~d~~~~~~lvDvG-------------~~P~l~~~~~Dl-P~Vv~~a~~------~~ri~~~~gDff~~~P~-- 73 (181)
.+++.. +.+.-.+++||| .-+..+.+.+|. |+.++.+.. -++++++.+|.++.+|.
T Consensus 67 ~~~~~l--~~~~g~~VLdIG~GsG~~t~~la~~~~~~~~V~~vE~~~~~~~~a~~~l~~~g~~~v~~~~gd~~~~~~~~~ 144 (212)
T PRK13942 67 IMCELL--DLKEGMKVLEIGTGSGYHAAVVAEIVGKSGKVVTIERIPELAEKAKKTLKKLGYDNVEVIVGDGTLGYEENA 144 (212)
T ss_pred HHHHHc--CCCCcCEEEEECCcccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCeEEEECCcccCCCcCC
Confidence 344555 566778999999 124457788887 566654432 35899999999876543
Q ss_pred -cceE
Q 036440 74 -VCMI 77 (181)
Q Consensus 74 -~d~~ 77 (181)
.|.+
T Consensus 145 ~fD~I 149 (212)
T PRK13942 145 PYDRI 149 (212)
T ss_pred CcCEE
Confidence 5877
|
|
| >TIGR00438 rrmJ cell division protein FtsJ | Back alignment and domain information |
|---|
Probab=90.17 E-value=7.1 Score=31.21 Aligned_cols=40 Identities=20% Similarity=0.190 Sum_probs=28.6
Q ss_pred HHHHHHHHHHHhccCC-------ccCCHHHHHHHHHhCCCeEEEEEEc
Q 036440 130 SVKILKICREAITSKA-------KLSTEKELESLFVEVHFHHYKITPL 170 (181)
Q Consensus 130 ~~~iL~~~~~a~~~~g-------~eRt~~E~~~Ll~~aGf~~~~i~~~ 170 (181)
..++|++++..++||| ......++-..+++ +|..+++.+.
T Consensus 125 ~~~~l~~~~~~LkpgG~lvi~~~~~~~~~~~l~~l~~-~~~~~~~~~~ 171 (188)
T TIGR00438 125 VELALDIAKEVLKPKGNFVVKVFQGEEIDEYLNELRK-LFEKVKVTKP 171 (188)
T ss_pred HHHHHHHHHHHccCCCEEEEEEccCccHHHHHHHHHh-hhceEEEeCC
Confidence 4578999999999999 34445566666655 4877777644
|
|
| >TIGR00417 speE spermidine synthase | Back alignment and domain information |
|---|
Probab=89.08 E-value=3 Score=35.73 Aligned_cols=52 Identities=17% Similarity=0.147 Sum_probs=34.5
Q ss_pred cCCCeEEEec-----------CCC-CceEEEeech-hhhhhhcc----------CCCceEEecCCCCCC---CC-cceE
Q 036440 26 ERLGSLVDVG-----------AFP-CVKCTEFDQP-HVVANLLD----------TNNLKYLADDFFQSI---PP-VCMI 77 (181)
Q Consensus 26 ~~~~~lvDvG-----------~~P-~l~~~~~DlP-~Vv~~a~~----------~~ri~~~~gDff~~~---P~-~d~~ 77 (181)
++.++|+++| +++ ..+.++.|+- .+++.+.. .+|++++.+|.++-+ +. .|++
T Consensus 71 ~~p~~VL~iG~G~G~~~~~ll~~~~~~~v~~veid~~vi~~a~~~~~~~~~~~~~~~v~i~~~D~~~~l~~~~~~yDvI 149 (270)
T TIGR00417 71 PNPKHVLVIGGGDGGVLREVLKHKSVEKATLVDIDEKVIELSKKFLPSLAGSYDDPRVDLQIDDGFKFLADTENTFDVI 149 (270)
T ss_pred CCCCEEEEEcCCchHHHHHHHhCCCcceEEEEeCCHHHHHHHHHHhHhhcccccCCceEEEECchHHHHHhCCCCccEE
Confidence 3557999999 454 4568888874 56554431 468888888887522 22 5777
|
the SpeE subunit of spermidine synthase catalysesthe reaction (putrescine + S-adenosylmethioninamine = spermidine + 5'-methylthioadenosine) and is involved in polyamine biosynthesis and in the biosynthesis of spermidine from arganine. The region between residues 77 and 120 of the seed alignment is thought to be involved in binding to decarboxylated SAM. |
| >PF07942 N2227: N2227-like protein; InterPro: IPR012901 This family features sequences that are similar to a region of hypothetical yeast gene product N2227 (P53934 from SWISSPROT) | Back alignment and domain information |
|---|
Probab=89.06 E-value=2.1 Score=37.81 Aligned_cols=41 Identities=12% Similarity=0.161 Sum_probs=33.8
Q ss_pred HHHHHHHHHHHHHhccCC----------------------ccCCHHHHHHHHHhCCCeEEEEE
Q 036440 128 EESVKILKICREAITSKA----------------------KLSTEKELESLFVEVHFHHYKIT 168 (181)
Q Consensus 128 ~~~~~iL~~~~~a~~~~g----------------------~eRt~~E~~~Ll~~aGf~~~~i~ 168 (181)
+..+.-|..+...++||| -|-|.+|+..++++.||++.+-.
T Consensus 179 ~Ni~~Yi~tI~~lLkpgG~WIN~GPLlyh~~~~~~~~~~sveLs~eEi~~l~~~~GF~~~~~~ 241 (270)
T PF07942_consen 179 ENIIEYIETIEHLLKPGGYWINFGPLLYHFEPMSIPNEMSVELSLEEIKELIEKLGFEIEKEE 241 (270)
T ss_pred HHHHHHHHHHHHHhccCCEEEecCCccccCCCCCCCCCcccCCCHHHHHHHHHHCCCEEEEEE
Confidence 445677888899999998 36789999999999999987643
|
This is thought to be expressed during meiosis and may be involved in the defence response to stressful conditions []. |
| >COG4262 Predicted spermidine synthase with an N-terminal membrane domain [General function prediction only] | Back alignment and domain information |
|---|
Probab=88.98 E-value=1.4 Score=41.58 Aligned_cols=113 Identities=18% Similarity=0.267 Sum_probs=72.0
Q ss_pred cCCCeEEEec-----------CCCCc-eEEEeec-hhhhhhhcc-------------CCCceEEecCCCCCCCCcceEec
Q 036440 26 ERLGSLVDVG-----------AFPCV-KCTEFDQ-PHVVANLLD-------------TNNLKYLADDFFQSIPPVCMIPL 79 (181)
Q Consensus 26 ~~~~~lvDvG-----------~~P~l-~~~~~Dl-P~Vv~~a~~-------------~~ri~~~~gDff~~~P~~d~~~~ 79 (181)
.+.++++=+| +||+. +.+..|+ |.+++.++. .+|++.+..|.|+-
T Consensus 288 ~~a~~vLvlGGGDGLAlRellkyP~~~qI~lVdLDP~miela~~~~vlr~~N~~sf~dpRv~Vv~dDAf~w--------- 358 (508)
T COG4262 288 RGARSVLVLGGGDGLALRELLKYPQVEQITLVDLDPRMIELASHATVLRALNQGSFSDPRVTVVNDDAFQW--------- 358 (508)
T ss_pred cccceEEEEcCCchHHHHHHHhCCCcceEEEEecCHHHHHHhhhhhHhhhhccCCccCCeeEEEeccHHHH---------
Confidence 3557777777 99965 6789998 788887652 45666666666653
Q ss_pred cccchhhhHHhhhhhhhhcCCCccchhhhhhcccccceeeeeeccCChHH--------HHHHHHHHHHHhccCC------
Q 036440 80 RLGYSHIKIMIAFFIRLVVGRGRLHIFSWLNFMKRVINMQIIIHVFGDEE--------SVKILKICREAITSKA------ 145 (181)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~iLHdw~D~~--------~~~iL~~~~~a~~~~g------ 145 (181)
++-.+. +...++-|..|.. +.+.-+..+..++++|
T Consensus 359 -----------------------------lr~a~~--~fD~vIVDl~DP~tps~~rlYS~eFY~ll~~~l~e~Gl~VvQa 407 (508)
T COG4262 359 -----------------------------LRTAAD--MFDVVIVDLPDPSTPSIGRLYSVEFYRLLSRHLAETGLMVVQA 407 (508)
T ss_pred -----------------------------HHhhcc--cccEEEEeCCCCCCcchhhhhhHHHHHHHHHhcCcCceEEEec
Confidence 332222 3366667777765 3456677788899888
Q ss_pred -----ccCCHHHHHHHHHhCCCeEEEE---EEcCCCCeEEE
Q 036440 146 -----KLSTEKELESLFVEVHFHHYKI---TPLFGLPSLIE 178 (181)
Q Consensus 146 -----~eRt~~E~~~Ll~~aGf~~~~i---~~~~~~~~viE 178 (181)
+.+..=-.-.-+++|||...-. +|.+|--+.+-
T Consensus 408 gs~y~tp~vfw~i~aTik~AG~~~~Pyhv~VPTFGeWGf~l 448 (508)
T COG4262 408 GSPYFTPRVFWRIDATIKSAGYRVWPYHVHVPTFGEWGFIL 448 (508)
T ss_pred CCCccCCceeeeehhHHHhCcceeeeeEEecCcccccceee
Confidence 3333334456688999886433 26666444443
|
|
| >PRK14902 16S rRNA methyltransferase B; Provisional | Back alignment and domain information |
|---|
Probab=87.70 E-value=4.8 Score=37.01 Aligned_cols=121 Identities=16% Similarity=0.100 Sum_probs=71.1
Q ss_pred HHHHhhhhhcCCCeEEEec------------C-CCCceEEEeec-hhhhhhhcc------CCCceEEecCCCCC---CCC
Q 036440 17 ALKYCKQIFERLGSLVDVG------------A-FPCVKCTEFDQ-PHVVANLLD------TNNLKYLADDFFQS---IPP 73 (181)
Q Consensus 17 ~l~~~~~d~~~~~~lvDvG------------~-~P~l~~~~~Dl-P~Vv~~a~~------~~ri~~~~gDff~~---~P~ 73 (181)
++... +...-.+++|+| . .|..+.+.+|+ |..++.+.. -++++++.+|+.+. ++.
T Consensus 242 v~~~l--~~~~g~~VLDlgaG~G~~t~~la~~~~~~~~v~avDi~~~~l~~~~~n~~~~g~~~v~~~~~D~~~~~~~~~~ 319 (444)
T PRK14902 242 VAPAL--DPKGGDTVLDACAAPGGKTTHIAELLKNTGKVVALDIHEHKLKLIEENAKRLGLTNIETKALDARKVHEKFAE 319 (444)
T ss_pred HHHHh--CCCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeCCcccccchhcc
Confidence 33444 445557899999 2 25668899998 555554421 23599999998753 333
Q ss_pred -cceEeccccchhhhHHhhhhhhhhcCCCccchhhhhhcccccceeee---eeccCChHH-------HHHHHHHHHHHhc
Q 036440 74 -VCMIPLRLGYSHIKIMIAFFIRLVVGRGRLHIFSWLNFMKRVINMQI---IIHVFGDEE-------SVKILKICREAIT 142 (181)
Q Consensus 74 -~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~---iLHdw~D~~-------~~~iL~~~~~a~~ 142 (181)
.|.+.++.-+|+. | .+++ +.-.++.++ ..+||+++...++
T Consensus 320 ~fD~Vl~D~Pcsg~--------------G---------------~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~Lk 370 (444)
T PRK14902 320 KFDKILVDAPCSGL--------------G---------------VIRRKPDIKYNKTKEDIESLQEIQLEILESVAQYLK 370 (444)
T ss_pred cCCEEEEcCCCCCC--------------e---------------eeccCcchhhcCCHHHHHHHHHHHHHHHHHHHHHcC
Confidence 6888555432211 0 0000 000122222 3478999999999
Q ss_pred cCC----------ccCCHHHHHHHHHhC-CCeEEEEE
Q 036440 143 SKA----------KLSTEKELESLFVEV-HFHHYKIT 168 (181)
Q Consensus 143 ~~g----------~eRt~~E~~~Ll~~a-Gf~~~~i~ 168 (181)
||| .+-.+...+.++++. +|+.+.+.
T Consensus 371 pGG~lvystcs~~~~Ene~vv~~~l~~~~~~~~~~~~ 407 (444)
T PRK14902 371 KGGILVYSTCTIEKEENEEVIEAFLEEHPEFELVPLQ 407 (444)
T ss_pred CCCEEEEEcCCCChhhhHHHHHHHHHhCCCcEEeccc
Confidence 999 222445566677765 48776553
|
|
| >PRK14121 tRNA (guanine-N(7)-)-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=87.39 E-value=7.2 Score=36.25 Aligned_cols=50 Identities=20% Similarity=0.259 Sum_probs=34.8
Q ss_pred CCeEEEec------------CCCCceEEEeec-hhhhhhhc------cCCCceEEecCCC---CCCCC--cceE
Q 036440 28 LGSLVDVG------------AFPCVKCTEFDQ-PHVVANLL------DTNNLKYLADDFF---QSIPP--VCMI 77 (181)
Q Consensus 28 ~~~lvDvG------------~~P~l~~~~~Dl-P~Vv~~a~------~~~ri~~~~gDff---~~~P~--~d~~ 77 (181)
-..+|||| ++|+...+.+|+ +..++.+. .-++|.++.+|.- +.+|. .|.+
T Consensus 123 ~p~vLEIGcGsG~~ll~lA~~~P~~~~iGIEI~~~~i~~a~~ka~~~gL~NV~~i~~DA~~ll~~~~~~s~D~I 196 (390)
T PRK14121 123 EKILIEIGFGSGRHLLYQAKNNPNKLFIGIEIHTPSIEQVLKQIELLNLKNLLIINYDARLLLELLPSNSVEKI 196 (390)
T ss_pred CCeEEEEcCcccHHHHHHHHhCCCCCEEEEECCHHHHHHHHHHHHHcCCCcEEEEECCHHHhhhhCCCCceeEE
Confidence 35899999 899999999997 44444332 1357999999973 44554 3554
|
|
| >PF05724 TPMT: Thiopurine S-methyltransferase (TPMT); InterPro: IPR008854 This family consists of thiopurine S-methyltransferase proteins from both eukaryotes and prokaryotes | Back alignment and domain information |
|---|
Probab=87.04 E-value=1.4 Score=37.24 Aligned_cols=115 Identities=15% Similarity=0.177 Sum_probs=76.3
Q ss_pred HHHHHHhhh-hhcCCCeEEEec----------CCCCceEEEeechh-hhhhh----c--------------cCCCceEEe
Q 036440 15 SLALKYCKQ-IFERLGSLVDVG----------AFPCVKCTEFDQPH-VVANL----L--------------DTNNLKYLA 64 (181)
Q Consensus 15 ~~~l~~~~~-d~~~~~~lvDvG----------~~P~l~~~~~DlP~-Vv~~a----~--------------~~~ri~~~~ 64 (181)
+.+.+.++. ....-.++++.| +--+...+.+|+-+ .++.+ . ..++|++..
T Consensus 24 p~L~~~~~~l~~~~~~rvLvPgCG~g~D~~~La~~G~~VvGvDls~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~ 103 (218)
T PF05724_consen 24 PALVEYLDSLALKPGGRVLVPGCGKGYDMLWLAEQGHDVVGVDLSPTAIEQAFEENNLEPTVTSVGGFKRYQAGRITIYC 103 (218)
T ss_dssp HHHHHHHHHHTTSTSEEEEETTTTTSCHHHHHHHTTEEEEEEES-HHHHHHHHHHCTTEEECTTCTTEEEETTSSEEEEE
T ss_pred HHHHHHHHhcCCCCCCeEEEeCCCChHHHHHHHHCCCeEEEEecCHHHHHHHHHHhccCCCcccccceeeecCCceEEEE
Confidence 556666542 133446899998 33466899999954 44433 0 146899999
Q ss_pred cCCCCCCCC----cceEeccccchhhhHHhhhhhhhhcCCCccchhhhhhcccccceeeeeeccCChHHHHHHHHHHHHH
Q 036440 65 DDFFQSIPP----VCMIPLRLGYSHIKIMIAFFIRLVVGRGRLHIFSWLNFMKRVINMQIIIHVFGDEESVKILKICREA 140 (181)
Q Consensus 65 gDff~~~P~----~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~iLHdw~D~~~~~iL~~~~~a 140 (181)
||||+--|. .|++ +=+..+|-.+.+...+--+.++..
T Consensus 104 gDfF~l~~~~~g~fD~i---------------------------------------yDr~~l~Alpp~~R~~Ya~~l~~l 144 (218)
T PF05724_consen 104 GDFFELPPEDVGKFDLI---------------------------------------YDRTFLCALPPEMRERYAQQLASL 144 (218)
T ss_dssp S-TTTGGGSCHHSEEEE---------------------------------------EECSSTTTS-GGGHHHHHHHHHHC
T ss_pred cccccCChhhcCCceEE---------------------------------------EEecccccCCHHHHHHHHHHHHHH
Confidence 999983332 3777 445566777788888888888888
Q ss_pred hccCC------------------ccCCHHHHHHHHHhCCCeEEEEEE
Q 036440 141 ITSKA------------------KLSTEKELESLFVEVHFHHYKITP 169 (181)
Q Consensus 141 ~~~~g------------------~eRt~~E~~~Ll~~aGf~~~~i~~ 169 (181)
++|+| -..+.+|+++++. .+|++..+..
T Consensus 145 l~p~g~~lLi~l~~~~~~~~GPPf~v~~~ev~~l~~-~~f~i~~l~~ 190 (218)
T PF05724_consen 145 LKPGGRGLLITLEYPQGEMEGPPFSVTEEEVRELFG-PGFEIEELEE 190 (218)
T ss_dssp EEEEEEEEEEEEES-CSCSSSSS----HHHHHHHHT-TTEEEEEEEE
T ss_pred hCCCCcEEEEEEEcCCcCCCCcCCCCCHHHHHHHhc-CCcEEEEEec
Confidence 88887 4678999999999 9998877754
|
Thiopurine S-methyltransferase (TPMT) is a cytosolic enzyme that catalyses S-methylation of aromatic and heterocyclic sulphydryl compounds, including anticancer and immunosuppressive thiopurines [].; GO: 0008119 thiopurine S-methyltransferase activity, 0008152 metabolic process, 0005737 cytoplasm; PDB: 1PJZ_A 2H11_A 2BZG_A 3LCC_A 3BGD_A 2GB4_A 3BGI_B. |
| >PRK13944 protein-L-isoaspartate O-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=86.55 E-value=5.6 Score=32.60 Aligned_cols=53 Identities=11% Similarity=-0.032 Sum_probs=35.7
Q ss_pred hcCCCeEEEec------------CC-CCceEEEeec-hhhhhhhc-------cCCCceEEecCCCCCCCC---cceE
Q 036440 25 FERLGSLVDVG------------AF-PCVKCTEFDQ-PHVVANLL-------DTNNLKYLADDFFQSIPP---VCMI 77 (181)
Q Consensus 25 ~~~~~~lvDvG------------~~-P~l~~~~~Dl-P~Vv~~a~-------~~~ri~~~~gDff~~~P~---~d~~ 77 (181)
...-.+++|+| .. +.-+.+.+|. |..++.+. ..+++++..+|+.+.+|. .|.+
T Consensus 70 ~~~~~~VLDiG~GsG~~~~~la~~~~~~g~V~~iD~~~~~~~~a~~~l~~~~~~~~v~~~~~d~~~~~~~~~~fD~I 146 (205)
T PRK13944 70 PRPGMKILEVGTGSGYQAAVCAEAIERRGKVYTVEIVKELAIYAAQNIERLGYWGVVEVYHGDGKRGLEKHAPFDAI 146 (205)
T ss_pred CCCCCEEEEECcCccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEECCcccCCccCCCccEE
Confidence 34456999999 22 2457788887 55555443 135799999999876653 5777
|
|
| >COG4301 Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=86.09 E-value=6.2 Score=35.60 Aligned_cols=29 Identities=14% Similarity=0.078 Sum_probs=27.2
Q ss_pred eeeeeeccCChHHHHHHHHHHHHHhccCC
Q 036440 117 NMQIIIHVFGDEESVKILKICREAITSKA 145 (181)
Q Consensus 117 ~l~~iLHdw~D~~~~~iL~~~~~a~~~~g 145 (181)
++...|-+++.++|...|..++.++.||-
T Consensus 159 flGStlGN~tp~e~~~Fl~~l~~a~~pGd 187 (321)
T COG4301 159 FLGSTLGNLTPGECAVFLTQLRGALRPGD 187 (321)
T ss_pred EecccccCCChHHHHHHHHHHHhcCCCcc
Confidence 78888999999999999999999999987
|
|
| >PF04072 LCM: Leucine carboxyl methyltransferase; InterPro: IPR007213 This entry represents a group of leucine carboxymethyltransferases which methylate the carboxyl group of leucine residues to form alpha-leucine ester residues | Back alignment and domain information |
|---|
Probab=85.47 E-value=1.3 Score=35.87 Aligned_cols=87 Identities=15% Similarity=0.157 Sum_probs=55.2
Q ss_pred hcCCCeEEEec------------CCCCceEEEeechhhhhhhcc---------CCCceEEecCCCCCCCCcceEeccccc
Q 036440 25 FERLGSLVDVG------------AFPCVKCTEFDQPHVVANLLD---------TNNLKYLADDFFQSIPPVCMIPLRLGY 83 (181)
Q Consensus 25 ~~~~~~lvDvG------------~~P~l~~~~~DlP~Vv~~a~~---------~~ri~~~~gDff~~~P~~d~~~~~~~~ 83 (181)
..+...+|-+| .+|+++...+|+|+|++.-.. ..+.++++.|+.+.- ..+.+
T Consensus 76 ~~~~~qvV~LGaGlDTr~~Rl~~~~~~~~~~evD~p~v~~~K~~~l~~~~~~~~~~~~~v~~Dl~~~~-~~~~L------ 148 (183)
T PF04072_consen 76 HPGARQVVNLGAGLDTRAYRLDNPAGGVRWFEVDLPEVIALKRRLLPESGARPPANYRYVPADLRDDS-WIDAL------ 148 (183)
T ss_dssp HTTESEEEEET-TT--HHHHHHHTTTTEEEEEEE-HHHHHHHHHHHHHTHHHHHEESSEEES-TTSHH-HHHHH------
T ss_pred CCCCcEEEEcCCCCCchHHHhhccccceEEEEeCCHHHHHHHHHHHHhCcccCCcceeEEeccccchh-hHHHH------
Confidence 35667999999 557899999999999874431 234678999998621 11111
Q ss_pred hhhhHHhhhhhhhhcCCCccchhhhhhcccccceeeeeeccCChHHHHHHHHHHH
Q 036440 84 SHIKIMIAFFIRLVVGRGRLHIFSWLNFMKRVINMQIIIHVFGDEESVKILKICR 138 (181)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~iLHdw~D~~~~~iL~~~~ 138 (181)
..- .+-.--..++++..++...+.+++..+|+.++
T Consensus 149 -------------~~~-------g~~~~~ptl~i~Egvl~Yl~~~~~~~ll~~ia 183 (183)
T PF04072_consen 149 -------------PKA-------GFDPDRPTLFIAEGVLMYLSPEQVDALLRAIA 183 (183)
T ss_dssp -------------HHC-------TT-TTSEEEEEEESSGGGS-HHHHHHHHHHH-
T ss_pred -------------HHh-------CCCCCCCeEEEEcchhhcCCHHHHHHHHHHhC
Confidence 000 00111134668889999999999999998763
|
It includes LCTM1 which regulates the activity of serine/threonine phosphatase 2A (PP2A) through methylation of the C-terminal leucine residue of the catalytic subunit of PP2A [, , ]. This affects the heteromultimeric composition of PP2A which in turn affects protein recognition and substrate specificity. Like many other methyltransferases LCTM1 uses S-adenosylmethionine (SAM) as the methyl donor. LCTM1 contains the common SAM-dependent methyltransferase core fold, with various insertions and additions creating a specific PP2A binding site []. This entry also contains LCTM2, a homologue of LCTM1 which is not necessary for PP2A methylation and whose function is not clear.; GO: 0008168 methyltransferase activity; PDB: 2UYQ_A 2CKD_B 2UYO_A 2ZZK_B 2ZWA_B 2ZW9_B 1RJE_C 2OB2_B 1RJF_A 1RJD_A .... |
| >PRK10901 16S rRNA methyltransferase B; Provisional | Back alignment and domain information |
|---|
Probab=85.27 E-value=10 Score=34.72 Aligned_cols=117 Identities=12% Similarity=0.077 Sum_probs=69.3
Q ss_pred hhcCCCeEEEec------------CCCCceEEEeec-hhhhhhhcc-----CCCceEEecCCCCCC---C--CcceEecc
Q 036440 24 IFERLGSLVDVG------------AFPCVKCTEFDQ-PHVVANLLD-----TNNLKYLADDFFQSI---P--PVCMIPLR 80 (181)
Q Consensus 24 d~~~~~~lvDvG------------~~P~l~~~~~Dl-P~Vv~~a~~-----~~ri~~~~gDff~~~---P--~~d~~~~~ 80 (181)
+...-.+|+|+| ..|+.+.+.+|. |+-++.+.. .-+++++.+|..+.. + ..|.+.++
T Consensus 241 ~~~~g~~VLDlgaG~G~~t~~la~~~~~~~v~a~D~s~~~l~~~~~n~~~~g~~~~~~~~D~~~~~~~~~~~~fD~Vl~D 320 (427)
T PRK10901 241 APQNGERVLDACAAPGGKTAHILELAPQAQVVALDIDAQRLERVRENLQRLGLKATVIVGDARDPAQWWDGQPFDRILLD 320 (427)
T ss_pred CCCCCCEEEEeCCCCChHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEcCcccchhhcccCCCCEEEEC
Confidence 344557899999 455567888997 555554431 234788999987531 2 25887555
Q ss_pred ccchhhhHHhhhhhhhhcCCCccchhhhhhcccccceeeeeeccCChH-------HHHHHHHHHHHHhccCC--------
Q 036440 81 LGYSHIKIMIAFFIRLVVGRGRLHIFSWLNFMKRVINMQIIIHVFGDE-------ESVKILKICREAITSKA-------- 145 (181)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~iLHdw~D~-------~~~~iL~~~~~a~~~~g-------- 145 (181)
.-+|+.-..- +--. +.+.+..+ .-.++|+.+...++|||
T Consensus 321 ~Pcs~~G~~~-----------~~p~---------------~~~~~~~~~l~~l~~~q~~iL~~a~~~LkpGG~lvystcs 374 (427)
T PRK10901 321 APCSATGVIR-----------RHPD---------------IKWLRRPEDIAALAALQSEILDALWPLLKPGGTLLYATCS 374 (427)
T ss_pred CCCCcccccc-----------cCcc---------------ccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCC
Confidence 4332110000 0000 01112222 23479999999999999
Q ss_pred --ccCCHHHHHHHHHhC-CCeEEE
Q 036440 146 --KLSTEKELESLFVEV-HFHHYK 166 (181)
Q Consensus 146 --~eRt~~E~~~Ll~~a-Gf~~~~ 166 (181)
.+-++++.+..+++. +|+.+.
T Consensus 375 ~~~~Ene~~v~~~l~~~~~~~~~~ 398 (427)
T PRK10901 375 ILPEENEQQIKAFLARHPDAELLD 398 (427)
T ss_pred CChhhCHHHHHHHHHhCCCCEEec
Confidence 566677888888875 676543
|
|
| >TIGR00080 pimt protein-L-isoaspartate(D-aspartate) O-methyltransferase | Back alignment and domain information |
|---|
Probab=84.09 E-value=7.6 Score=31.85 Aligned_cols=60 Identities=12% Similarity=0.083 Sum_probs=40.3
Q ss_pred HHHHHhhhhhcCCCeEEEec------------C-CCCceEEEeec-hhhhhhhcc------CCCceEEecCCCCCCCC--
Q 036440 16 LALKYCKQIFERLGSLVDVG------------A-FPCVKCTEFDQ-PHVVANLLD------TNNLKYLADDFFQSIPP-- 73 (181)
Q Consensus 16 ~~l~~~~~d~~~~~~lvDvG------------~-~P~l~~~~~Dl-P~Vv~~a~~------~~ri~~~~gDff~~~P~-- 73 (181)
.+++.. +.+.-.+++|+| . .+..+.+.+|. |+.++.+.. -++++++.+|..+..+.
T Consensus 68 ~~~~~l--~~~~~~~VLDiG~GsG~~a~~la~~~~~~g~V~~vD~~~~~~~~A~~~~~~~g~~~v~~~~~d~~~~~~~~~ 145 (215)
T TIGR00080 68 MMTELL--ELKPGMKVLEIGTGSGYQAAVLAEIVGRDGLVVSIERIPELAEKAERRLRKLGLDNVIVIVGDGTQGWEPLA 145 (215)
T ss_pred HHHHHh--CCCCcCEEEEECCCccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHCCCCCeEEEECCcccCCcccC
Confidence 445555 456668999999 2 23456778885 666665532 35799999999875443
Q ss_pred -cceE
Q 036440 74 -VCMI 77 (181)
Q Consensus 74 -~d~~ 77 (181)
.|.+
T Consensus 146 ~fD~I 150 (215)
T TIGR00080 146 PYDRI 150 (215)
T ss_pred CCCEE
Confidence 5776
|
Among the prokaryotes, the gene name is pcm. Among eukaryotes, pimt. |
| >PRK14904 16S rRNA methyltransferase B; Provisional | Back alignment and domain information |
|---|
Probab=84.07 E-value=11 Score=34.77 Aligned_cols=113 Identities=13% Similarity=0.121 Sum_probs=66.2
Q ss_pred CCCeEEEecCCCC-------------ceEEEeech-hhhhhhcc------CCCceEEecCCCCCCCC--cceEeccccch
Q 036440 27 RLGSLVDVGAFPC-------------VKCTEFDQP-HVVANLLD------TNNLKYLADDFFQSIPP--VCMIPLRLGYS 84 (181)
Q Consensus 27 ~~~~lvDvG~~P~-------------l~~~~~DlP-~Vv~~a~~------~~ri~~~~gDff~~~P~--~d~~~~~~~~~ 84 (181)
.-.+|+|+|+-|+ .+.+.+|.- +-++.+.. -++|+++.+|..+..|. .|.++++.-+|
T Consensus 250 ~g~~VLDlgaG~G~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~~~v~~~~~Da~~~~~~~~fD~Vl~D~Pcs 329 (445)
T PRK14904 250 PGSTVLDLCAAPGGKSTFMAELMQNRGQITAVDRYPQKLEKIRSHASALGITIIETIEGDARSFSPEEQPDAILLDAPCT 329 (445)
T ss_pred CCCEEEEECCCCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHhCCCeEEEEeCcccccccCCCCCEEEEcCCCC
Confidence 4468999994333 367888874 44443321 24689999998764343 68886665433
Q ss_pred hhhHHhhhhhhhhcCCCccchhhhhhcccccceeeeeeccCChHH-------HHHHHHHHHHHhccCC----------cc
Q 036440 85 HIKIMIAFFIRLVVGRGRLHIFSWLNFMKRVINMQIIIHVFGDEE-------SVKILKICREAITSKA----------KL 147 (181)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~iLHdw~D~~-------~~~iL~~~~~a~~~~g----------~e 147 (181)
+....- |.+ -+...|+.++ -.+||+++...++||| ++
T Consensus 330 g~g~~~----r~p----------------------~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpgG~lvystcs~~~~ 383 (445)
T PRK14904 330 GTGVLG----RRA----------------------ELRWKLTPEKLAELVGLQAELLDHAASLLKPGGVLVYATCSIEPE 383 (445)
T ss_pred Ccchhh----cCc----------------------chhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCCChh
Confidence 321100 000 0111233332 2368999999999999 33
Q ss_pred CCHHHHHHHHHhC-CCeEE
Q 036440 148 STEKELESLFVEV-HFHHY 165 (181)
Q Consensus 148 Rt~~E~~~Ll~~a-Gf~~~ 165 (181)
=+++..+.+|++. +|...
T Consensus 384 Ene~~v~~~l~~~~~~~~~ 402 (445)
T PRK14904 384 ENELQIEAFLQRHPEFSAE 402 (445)
T ss_pred hHHHHHHHHHHhCCCCEEe
Confidence 3455667888876 57653
|
|
| >PF07021 MetW: Methionine biosynthesis protein MetW; InterPro: IPR010743 This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins | Back alignment and domain information |
|---|
Probab=84.03 E-value=5.6 Score=33.78 Aligned_cols=27 Identities=30% Similarity=0.242 Sum_probs=24.3
Q ss_pred ccCCHHHHHHHHHhCCCeEEEEEEcCC
Q 036440 146 KLSTEKELESLFVEVHFHHYKITPLFG 172 (181)
Q Consensus 146 ~eRt~~E~~~Ll~~aGf~~~~i~~~~~ 172 (181)
+.-|.+++++|.++.|+++.+-..+.+
T Consensus 144 h~~Ti~DFe~lc~~~~i~I~~~~~~~~ 170 (193)
T PF07021_consen 144 HLCTIKDFEDLCRELGIRIEERVFLDG 170 (193)
T ss_pred ccccHHHHHHHHHHCCCEEEEEEEEcC
Confidence 888999999999999999998887654
|
Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, Gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In P. putida, as in Gram-positive bacteria and certain fungi, the second and third steps are a direct sulphydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells []. |
| >COG2521 Predicted archaeal methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=83.62 E-value=2.1 Score=38.13 Aligned_cols=84 Identities=14% Similarity=0.085 Sum_probs=59.7
Q ss_pred chhhhhhhcc--------CCCceEEecCCCCCCCC-cceEeccccchhhhHHhhhhhhhhcCCCccchhhhhhcccccce
Q 036440 47 QPHVVANLLD--------TNNLKYLADDFFQSIPP-VCMIPLRLGYSHIKIMIAFFIRLVVGRGRLHIFSWLNFMKRVIN 117 (181)
Q Consensus 47 lP~Vv~~a~~--------~~ri~~~~gDff~~~P~-~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 117 (181)
=|+|++.+.. ..+|+.+-||.++-++. .|..
T Consensus 166 dp~VLeLa~lNPwSr~l~~~~i~iilGD~~e~V~~~~D~s---------------------------------------- 205 (287)
T COG2521 166 DPNVLELAKLNPWSRELFEIAIKIILGDAYEVVKDFDDES---------------------------------------- 205 (287)
T ss_pred CCCeEEeeccCCCCccccccccEEecccHHHHHhcCCccc----------------------------------------
Confidence 3888887764 45899999999976655 3442
Q ss_pred eeeeeccCCh---H---HHHHHHHHHHHHhccCC-----------ccC---CHHHHHHHHHhCCCeEEEEEEc
Q 036440 118 MQIIIHVFGD---E---ESVKILKICREAITSKA-----------KLS---TEKELESLFVEVHFHHYKITPL 170 (181)
Q Consensus 118 l~~iLHdw~D---~---~~~~iL~~~~~a~~~~g-----------~eR---t~~E~~~Ll~~aGf~~~~i~~~ 170 (181)
+..|+||-+- . .+.+.-+..+.-+.+|| |-| -.++..+.|.++||..++....
T Consensus 206 fDaIiHDPPRfS~AgeLYseefY~El~RiLkrgGrlFHYvG~Pg~ryrG~d~~~gVa~RLr~vGF~~v~~~~~ 278 (287)
T COG2521 206 FDAIIHDPPRFSLAGELYSEEFYRELYRILKRGGRLFHYVGNPGKRYRGLDLPKGVAERLRRVGFEVVKKVRE 278 (287)
T ss_pred cceEeeCCCccchhhhHhHHHHHHHHHHHcCcCCcEEEEeCCCCcccccCChhHHHHHHHHhcCceeeeeehh
Confidence 3666787432 2 34567788888999998 222 2568899999999998776543
|
|
| >PF03291 Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 This is a family of viral mRNA capping enzymes | Back alignment and domain information |
|---|
Probab=83.48 E-value=18 Score=32.57 Aligned_cols=29 Identities=21% Similarity=0.342 Sum_probs=22.9
Q ss_pred eeeeeecc-CChH-HHHHHHHHHHHHhccCC
Q 036440 117 NMQIIIHV-FGDE-ESVKILKICREAITSKA 145 (181)
Q Consensus 117 ~l~~iLHd-w~D~-~~~~iL~~~~~a~~~~g 145 (181)
-++-.||. |..+ .+..+|+|++..|.|||
T Consensus 150 ScQFalHY~Fese~~ar~~l~Nvs~~Lk~GG 180 (331)
T PF03291_consen 150 SCQFALHYAFESEEKARQFLKNVSSLLKPGG 180 (331)
T ss_dssp EEES-GGGGGSSHHHHHHHHHHHHHTEEEEE
T ss_pred ehHHHHHHhcCCHHHHHHHHHHHHHhcCCCC
Confidence 77888898 5544 45569999999999999
|
The enzyme catalyses the first two reactions in the mRNA cap formation pathway. It is a heterodimer consisting of a large and small subunit. This entry is the large subunit. ; GO: 0006370 mRNA capping; PDB: 3EPP_A 3BGV_C 2VDW_C 1RI5_A 1RI3_A 1RI1_A 1Z3C_A 1RI2_A 2HV9_A 1RI4_A. |
| >PF05219 DREV: DREV methyltransferase; InterPro: IPR007884 This family contains DREV protein homologues from several eukaryotes | Back alignment and domain information |
|---|
Probab=82.04 E-value=8 Score=34.39 Aligned_cols=42 Identities=24% Similarity=0.207 Sum_probs=32.7
Q ss_pred HHHHHHHHHHhccCC------------------------------ccCCHHHH----HHHHHhCCCeEEEEEEcCC
Q 036440 131 VKILKICREAITSKA------------------------------KLSTEKEL----ESLFVEVHFHHYKITPLFG 172 (181)
Q Consensus 131 ~~iL~~~~~a~~~~g------------------------------~eRt~~E~----~~Ll~~aGf~~~~i~~~~~ 172 (181)
..+|+.++.++.|+| .-.|.||. -.+|+.+||++.+.+.+|-
T Consensus 168 ~~LL~~i~~~l~p~G~lilAvVlP~~pyVE~~~g~~~~P~e~l~~~g~~~E~~v~~l~~v~~p~GF~v~~~tr~PY 243 (265)
T PF05219_consen 168 LTLLRDIRRALKPNGRLILAVVLPFRPYVEFGGGKSNRPSELLPVKGATFEEQVSSLVNVFEPAGFEVERWTRLPY 243 (265)
T ss_pred HHHHHHHHHHhCCCCEEEEEEEecccccEEcCCCCCCCchhhcCCCCCcHHHHHHHHHHHHHhcCCEEEEEeccCc
Confidence 479999999999999 33455543 2678889999999988774
|
The function of this protein is unknown []. However, these proteins appear to be related to other methyltransferases. |
| >PLN02781 Probable caffeoyl-CoA O-methyltransferase | Back alignment and domain information |
|---|
Probab=81.21 E-value=18 Score=30.51 Aligned_cols=47 Identities=13% Similarity=0.191 Sum_probs=34.3
Q ss_pred hhcCCCeEEEec------------CC-CCceEEEeech-hhhhhhc-------cCCCceEEecCCCCC
Q 036440 24 IFERLGSLVDVG------------AF-PCVKCTEFDQP-HVVANLL-------DTNNLKYLADDFFQS 70 (181)
Q Consensus 24 d~~~~~~lvDvG------------~~-P~l~~~~~DlP-~Vv~~a~-------~~~ri~~~~gDff~~ 70 (181)
...+.++++|+| +. |..+.+.+|.. +.++.+. ..++|+++.||..+.
T Consensus 65 ~~~~~~~vLEiGt~~G~s~l~la~~~~~~g~v~tiD~d~~~~~~A~~n~~~~gl~~~i~~~~gda~~~ 132 (234)
T PLN02781 65 KIMNAKNTLEIGVFTGYSLLTTALALPEDGRITAIDIDKEAYEVGLEFIKKAGVDHKINFIQSDALSA 132 (234)
T ss_pred HHhCCCEEEEecCcccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEccHHHH
Confidence 345778999999 33 46788999984 4444442 367999999999864
|
|
| >COG1352 CheR Methylase of chemotaxis methyl-accepting proteins [Cell motility and secretion / Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=80.42 E-value=3.8 Score=36.08 Aligned_cols=29 Identities=14% Similarity=0.289 Sum_probs=28.4
Q ss_pred eeeeeeccCChHHHHHHHHHHHHHhccCC
Q 036440 117 NMQIIIHVFGDEESVKILKICREAITSKA 145 (181)
Q Consensus 117 ~l~~iLHdw~D~~~~~iL~~~~~a~~~~g 145 (181)
+.++||=.++.+.-.+||+..+.+|+|||
T Consensus 207 fCRNVLIYFd~~~q~~il~~f~~~L~~gG 235 (268)
T COG1352 207 FCRNVLIYFDEETQERILRRFADSLKPGG 235 (268)
T ss_pred EEcceEEeeCHHHHHHHHHHHHHHhCCCC
Confidence 99999999999999999999999999999
|
|
| >PRK11088 rrmA 23S rRNA methyltransferase A; Provisional | Back alignment and domain information |
|---|
Probab=80.25 E-value=14 Score=31.48 Aligned_cols=51 Identities=14% Similarity=0.238 Sum_probs=34.7
Q ss_pred CCCeEEEec------------CCCC---ceEEEeec-hhhhhhhcc-CCCceEEecCCCC-CCCC--cceE
Q 036440 27 RLGSLVDVG------------AFPC---VKCTEFDQ-PHVVANLLD-TNNLKYLADDFFQ-SIPP--VCMI 77 (181)
Q Consensus 27 ~~~~lvDvG------------~~P~---l~~~~~Dl-P~Vv~~a~~-~~ri~~~~gDff~-~~P~--~d~~ 77 (181)
...+++|+| .+|. ...+.+|+ |..++.+.. .+++++..+|..+ +++. .|++
T Consensus 85 ~~~~vLDiGcG~G~~~~~l~~~~~~~~~~~v~giD~s~~~l~~A~~~~~~~~~~~~d~~~lp~~~~sfD~I 155 (272)
T PRK11088 85 KATALLDIGCGEGYYTHALADALPEITTMQLFGLDISKVAIKYAAKRYPQVTFCVASSHRLPFADQSLDAI 155 (272)
T ss_pred CCCeEEEECCcCCHHHHHHHHhcccccCCeEEEECCCHHHHHHHHHhCCCCeEEEeecccCCCcCCceeEE
Confidence 346799999 4554 35789998 556665543 4678999999875 3333 4666
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST 
Original result of BLAST against Protein Data Bank
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() | |
| Query | 181 | ||||
| 1fp2_A | 352 | Crystal Structure Analysis Of Isoflavone O-Methyltr | 3e-21 | ||
| 1fpx_A | 352 | Crystal Structure Analysis Of Selenomethionine Subs | 8e-21 | ||
| 2qyo_A | 357 | Crystal Structure Of Isoflavone O-Methyltransferase | 2e-20 | ||
| 1zga_A | 357 | Crystal Structure Of Isoflavanone 4'-o-methyltransf | 1e-17 | ||
| 1zg3_A | 358 | Crystal Structure Of The Isoflavanone 4'-O-Methyltr | 1e-17 | ||
| 1zgj_A | 354 | Crystal Structure Of Isoflavanone 4'-O-Methyltransf | 1e-17 | ||
| 1kyw_A | 365 | Crystal Structure Analysis Of Caffeic Acid5-Hydroxy | 2e-04 | ||
| 3p9c_A | 364 | Crystal Structure Of Perennial Ryegrass Lpomt1 Boun | 4e-04 |
| >pdb|1FP2|A Chain A, Crystal Structure Analysis Of Isoflavone O-Methyltransferase Length = 352 | Back alignment and structure |
|
| >pdb|1FPX|A Chain A, Crystal Structure Analysis Of Selenomethionine Substituted Isoflavone O-Methyltransferase Length = 352 | Back alignment and structure |
|
| >pdb|2QYO|A Chain A, Crystal Structure Of Isoflavone O-Methyltransferase Homolog In Complex With Biochanin A And Sah Length = 357 | Back alignment and structure |
|
| >pdb|1ZGA|A Chain A, Crystal Structure Of Isoflavanone 4'-o-methyltransferase Complexed With (+)-6a-hydroxymaackiain Length = 357 | Back alignment and structure |
|
| >pdb|1ZG3|A Chain A, Crystal Structure Of The Isoflavanone 4'-O-Methyltransferase Complexed With Sah And 2,7,4'-Trihydroxyisoflavanone Length = 358 | Back alignment and structure |
|
| >pdb|1ZGJ|A Chain A, Crystal Structure Of Isoflavanone 4'-O-Methyltransferase Complexed With (+)-Pisatin Length = 354 | Back alignment and structure |
|
| >pdb|1KYW|A Chain A, Crystal Structure Analysis Of Caffeic Acid5-Hydroxyferulic Acid 35-O-Methyltransferase In Complex With 5- Hydroxyconiferaldehyde Length = 365 | Back alignment and structure |
|
| >pdb|3P9C|A Chain A, Crystal Structure Of Perennial Ryegrass Lpomt1 Bound To Sah Length = 364 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST 
Original result of RPS-BLAST against PDB70 database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| Query | 181 | |||
| 1fp2_A | 352 | Isoflavone O-methyltransferase; protein-product co | 5e-30 | |
| 3lst_A | 348 | CALO1 methyltransferase; calicheamicin, enediyne, | 9e-29 | |
| 3reo_A | 368 | (ISO)eugenol O-methyltransferase; directed evoluti | 1e-27 | |
| 3p9c_A | 364 | Caffeic acid O-methyltransferase; S-adenosylmethio | 3e-27 | |
| 1zg3_A | 358 | Isoflavanone 4'-O-methyltransferase; rossman fold, | 4e-27 | |
| 1fp1_D | 372 | Isoliquiritigenin 2'-O-methyltransferase; protein- | 2e-26 | |
| 3gwz_A | 369 | MMCR; methyltransferase, mitomycin, S-adenosyl met | 4e-26 | |
| 1tw3_A | 360 | COMT, carminomycin 4-O-methyltransferase; anthracy | 2e-25 | |
| 3i53_A | 332 | O-methyltransferase; CO-complex, rossmann-like fol | 1e-24 | |
| 1qzz_A | 374 | RDMB, aclacinomycin-10-hydroxylase; anthracycline, | 9e-23 | |
| 2ip2_A | 334 | Probable phenazine-specific methyltransferase; pyo | 9e-23 | |
| 1x19_A | 359 | CRTF-related protein; methyltransferase, bacterioc | 3e-22 | |
| 2r3s_A | 335 | Uncharacterized protein; methyltransferase domain, | 8e-14 | |
| 3mcz_A | 352 | O-methyltransferase; adomet_mtases, S-adenosylmeth | 2e-13 | |
| 3dp7_A | 363 | SAM-dependent methyltransferase; structural genomi | 2e-11 |
| >1fp2_A Isoflavone O-methyltransferase; protein-product complex; HET: SAH HMO; 1.40A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpx_A* 2qyo_A* Length = 352 | Back alignment and structure |
|---|
Score = 111 bits (279), Expect = 5e-30
Identities = 66/230 (28%), Positives = 94/230 (40%), Gaps = 90/230 (39%)
Query: 1 FNQAVASDTQTVTASLALKYCKQIFERLGSLVDVG------------AFPCVKCTEFDQP 48
FN A+ASD++ + AL+ C +F+ L S+VDVG FP +KC FD+P
Sbjct: 164 FNDAMASDSKLINL--ALRDCDFVFDGLESIVDVGGGTGTTAKIICETFPKLKCIVFDRP 221
Query: 49 HVVANLLDTNNLKYLADDFFQSIPPVCMIPLRLGYSHIKIMIAFFIRLVVGRGRLHIFSW 108
VV NL +NNL Y+ D F SIP + +
Sbjct: 222 QVVENLSGSNNLTYVGGDMFTSIPN---------------------------ADAVLLKY 254
Query: 109 LNFMKRVINMQIIIHVFGDEESVKILKICREAITSKAKLS-------------------- 148
I+H + D++ ++ILK C+EA+T+ K
Sbjct: 255 ------------ILHNWTDKDCLRILKKCKEAVTNDGKRGKVTIIDMVIDKKKDENQVTQ 302
Query: 149 -----------------TEKELESLFVEVHFHHYKITPLFGLPSLIEVYP 181
E+E + LF+E F HYKI+PL G SLIE+YP
Sbjct: 303 IKLLMDVNMACLNGKERNEEEWKKLFIEAGFQHYKISPLTGFLSLIEIYP 352
|
| >3lst_A CALO1 methyltransferase; calicheamicin, enediyne, SAH, STRU genomics, PSI-2, protein structure initiative; HET: SAH; 2.40A {Micromonospora echinospora} Length = 348 | Back alignment and structure |
|---|
Score = 108 bits (271), Expect = 9e-29
Identities = 37/229 (16%), Positives = 64/229 (27%), Gaps = 90/229 (39%)
Query: 1 FNQAVASDTQTVTASLALKYCKQIFERLGSLVDVG------------AFPCVKCTEFDQP 48
+ + + + + LA F G++ DVG P ++ D+
Sbjct: 161 YYEGMETVSAAEHLILARAG---DFPATGTVADVGGGRGGFLLTVLREHPGLQGVLLDRA 217
Query: 49 HVVANLLD-----TNNLKYLADDFFQSIPPVCMIPLRLGYSHIKIMIAFFIRLVVGRGRL 103
VVA K + DF + +P +
Sbjct: 218 EVVARHRLDAPDVAGRWKVVEGDFLREVPHADVH-------------------------- 251
Query: 104 HIFSWLNFMKRVINMQIIIHVFGDEESVKILKICREAITSKAKLS--------------- 148
+KR I+H +GDE+SV+IL CR + + ++
Sbjct: 252 -------VLKR------ILHNWGDEDSVRILTNCRRVMPAHGRVLVIDAVVPEGNDAHQS 298
Query: 149 ----------------TEKELESLFVEVHFHHYKITPLFGLPSLIEVYP 181
T ELE LF ++ + S+ P
Sbjct: 299 KEMDFMMLAARTGQERTAAELEPLFTAAGLRLDRVVGTSSVMSIAVGVP 347
|
| >3reo_A (ISO)eugenol O-methyltransferase; directed evolution, saturation mutagenesis, regioselectivity transferase; HET: SAH EUG; 1.90A {Clarkia breweri} PDB: 1kyz_A* 1kyw_A* Length = 368 | Back alignment and structure |
|---|
Score = 105 bits (264), Expect = 1e-27
Identities = 41/228 (17%), Positives = 70/228 (30%), Gaps = 89/228 (39%)
Query: 1 FNQAVASDTQTVTASLALKYCKQIFERLGSLVDVG------------AFPCVKCTEFDQP 48
FN+ ++S++ + Y FE L ++VDVG +P + FD P
Sbjct: 179 FNKGMSSNSTITMKKILEMY--NGFEGLTTIVDVGGGTGAVASMIVAKYPSINAINFDLP 236
Query: 49 HVVANLLDTNNLKYLADDFFQSIPPVCMIPLRLGYSHIKIMIAFFIRLVVGRGRLHIFSW 108
HV+ + + +++L D F +P G W
Sbjct: 237 HVIQDAPAFSGVEHLGGDMFDGVPK---------------------------GDAIFIKW 269
Query: 109 LNFMKRVINMQIIIHVFGDEESVKILKICREAITSKAKL--------------------- 147
I H + DE +K+LK C A+ K+
Sbjct: 270 ------------ICHDWSDEHCLKLLKNCYAALPDHGKVIVAEYILPPSPDPSIATKVVI 317
Query: 148 ---------------STEKELESLFVEVHFHHYKITPLFGLPSLIEVY 180
TEKE ++L + F +K+ ++E
Sbjct: 318 HTDALMLAYNPGGKERTEKEFQALAMASGFRGFKVASCAFNTYVMEFL 365
|
| >3p9c_A Caffeic acid O-methyltransferase; S-adenosylmethionine dependent O-methyltransferase; HET: SAH; 1.80A {Lolium perenne} PDB: 3p9i_A* 3p9k_A* Length = 364 | Back alignment and structure |
|---|
Score = 104 bits (260), Expect = 3e-27
Identities = 42/228 (18%), Positives = 71/228 (31%), Gaps = 89/228 (39%)
Query: 1 FNQAVASDTQTVTASLALKYCKQIFERLGSLVDVG------------AFPCVKCTEFDQP 48
FN+ + + + +T L Y FE LG+LVDVG +P +K FD P
Sbjct: 177 FNEGMKNHSIIITKKLLELY--HGFEGLGTLVDVGGGVGATVAAIAAHYPTIKGVNFDLP 234
Query: 49 HVVANLLDTNNLKYLADDFFQSIPPVCMIPLRLGYSHIKIMIAFFIRLVVGRGRLHIFSW 108
HV++ + ++ D F+ +P G + W
Sbjct: 235 HVISEAPQFPGVTHVGGDMFKEVPS---------------------------GDTILMKW 267
Query: 109 LNFMKRVINMQIIIHVFGDEESVKILKICREAITSKAKL--------------------- 147
I+H + D+ +LK C +A+ + K+
Sbjct: 268 ------------ILHDWSDQHCATLLKNCYDALPAHGKVVLVQCILPVNPEANPSSQGVF 315
Query: 148 ---------------STEKELESLFVEVHFHHYKITPLFGLPSLIEVY 180
E+E ++L F K T ++ IE
Sbjct: 316 HVDMIMLAHNPGGRERYEREFQALARGAGFTGVKSTYIYANAWAIEFT 363
|
| >1zg3_A Isoflavanone 4'-O-methyltransferase; rossman fold, plant Pro transferase; HET: 2HI SAH; 2.35A {Medicago truncatula} PDB: 1zga_A* 1zhf_A* 1zgj_A* Length = 358 | Back alignment and structure |
|---|
Score = 104 bits (260), Expect = 4e-27
Identities = 67/231 (29%), Positives = 91/231 (39%), Gaps = 91/231 (39%)
Query: 1 FNQAVASDTQTVTASLALKYCKQIFERLGSLVDVG------------AFPCVKCTEFDQP 48
F A+ASD++ L+ K++FE L SLVDVG FP +KCT FDQP
Sbjct: 169 FQDAMASDSRMFKL--VLQENKRVFEGLESLVDVGGGTGGVTKLIHEIFPHLKCTVFDQP 226
Query: 49 HVVANLLDTNNLKYLADDFFQSIPPVCMIPLRLGYSHIKIMIAFFIRLVVGRGRLHIFSW 108
VV NL NL ++ D F+SIP
Sbjct: 227 QVVGNLTGNENLNFVGGDMFKSIPSAD--------------------------------- 253
Query: 109 LNFMKRVINMQIIIHVFGDEESVKILKICREAITSKAKLS-------------------- 148
+ ++ ++H + DE+S+KILK +EAI+ K K
Sbjct: 254 ------AVLLKWVLHDWNDEQSLKILKNSKEAISHKGKDGKVIIIDISIDETSDDRGLTE 307
Query: 149 ------------------TEKELESLFVEVHFHHYKITPLFGLPSLIEVYP 181
T++E E L + F YKITP+ G SLIEVYP
Sbjct: 308 LQLDYDLVMLTMFLGKERTKQEWEKLIYDAGFSSYKITPISGFKSLIEVYP 358
|
| >1fp1_D Isoliquiritigenin 2'-O-methyltransferase; protein-substrate, protein-product complex; HET: SAH HCC; 1.82A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpq_A* Length = 372 | Back alignment and structure |
|---|
Score = 101 bits (254), Expect = 2e-26
Identities = 40/228 (17%), Positives = 70/228 (30%), Gaps = 89/228 (39%)
Query: 1 FNQAVASDTQTVTASLALKYCKQIFERLGSLVDVG------------AFPCVKCTEFDQP 48
FN+++ T + Y FE + +LVDVG +P +K FD P
Sbjct: 185 FNKSMVDVCATEMKRMLEIY--TGFEGISTLVDVGGGSGRNLELIISKYPLIKGINFDLP 242
Query: 49 HVVANLLDTNNLKYLADDFFQSIPPVCMIPLRLGYSHIKIMIAFFIRLVVGRGRLHIFSW 108
V+ N + ++++ D F S+P G I
Sbjct: 243 QVIENAPPLSGIEHVGGDMFASVPQ---------------------------GDAMILKA 275
Query: 109 LNFMKRVINMQIIIHVFGDEESVKILKICREAITSKAKLS-------------------- 148
+ H + DE+ ++ L C +A++ K+
Sbjct: 276 ------------VCHNWSDEKCIEFLSNCHKALSPNGKVIIVEFILPEEPNTSEESKLVS 323
Query: 149 ---------------TEKELESLFVEVHFHHYKIT-PLFGLPSLIEVY 180
TEK+ E L F +++ F ++E Y
Sbjct: 324 TLDNLMFITVGGRERTEKQYEKLSKLSGFSKFQVACRAFNSLGVMEFY 371
|
| >3gwz_A MMCR; methyltransferase, mitomycin, S-adenosyl methionine, transferase; HET: MSE SAH; 1.91A {Streptomyces lavendulae} PDB: 3gxo_A* Length = 369 | Back alignment and structure |
|---|
Score = 101 bits (253), Expect = 4e-26
Identities = 38/231 (16%), Positives = 70/231 (30%), Gaps = 91/231 (39%)
Query: 1 FNQAVASDTQTVTASLALKYCKQIFERLGSLVDVG------------AFPCVKCTEFDQP 48
FN+A+ S + T +A Y F + VD+G AFP ++ T ++P
Sbjct: 179 FNRAMGSVSLTEAGQVAAAY---DFSGAATAVDIGGGRGSLMAAVLDAFPGLRGTLLERP 235
Query: 49 HVVAN-------LLDTNNLKYLADDFFQSIPPVCMIPLRLGYSHIKIMIAFFIRLVVGRG 101
V + + L DFF++IP G
Sbjct: 236 PVAEEARELLTGRGLADRCEILPGDFFETIPD--------GADVY--------------- 272
Query: 102 RLHIFSWLNFMKRVINMQIIIHVFGDEESVKILKICREAITSKAKLS------------- 148
+K ++H + D++ V+IL+ A+ ++L
Sbjct: 273 ---------LIKH------VLHDWDDDDVVRILRRIATAMKPDSRLLVIDNLIDERPAAS 317
Query: 149 -----------------TEKELESLFVEVHFHHYKITPL-FGLPSLIEVYP 181
+E E +L + + P G ++E+
Sbjct: 318 TLFVDLLLLVLVGGAERSESEFAALLEKSGLRVERSLPCGAGPVRIVEIRR 368
|
| >1tw3_A COMT, carminomycin 4-O-methyltransferase; anthracycline, methylate, tailoring enzyme, polyketide, S-adenosyl-L-homocystein; HET: SAH ERT; 2.35A {Streptomyces peucetius} SCOP: a.4.5.29 c.66.1.12 PDB: 1tw2_A* Length = 360 | Back alignment and structure |
|---|
Score = 99.7 bits (249), Expect = 2e-25
Identities = 30/237 (12%), Positives = 61/237 (25%), Gaps = 97/237 (40%)
Query: 1 FNQAVASDTQTVTASLALKYCKQIFERLGSLVDVG------------AFPCVKCTEFDQP 48
F+ +A D + A Y + + ++DVG P V T +
Sbjct: 160 FDSLLACDQDVAFDAPAAAY---DWTNVRHVLDVGGGKGGFAAAIARRAPHVSATVLEMA 216
Query: 49 HVVANLLD-------TNNLKYLADDFFQSIPPVCMIPLRLGYSHIKIMIAFFIRLVVGRG 101
V ++ + + DFF+ +P I
Sbjct: 217 GTVDTARSYLKDEGLSDRVDVVEGDFFEPLPR--------KADAI--------------- 253
Query: 102 RLHIFSWLNFMKRVINMQIIIHVFGDEESVKILKICREAITSKAKL-------------- 147
+ ++ + D ++V+IL C EA+ ++
Sbjct: 254 ---------ILSF------VLLNWPDHDAVRILTRCAEALEPGGRILIHERDDLHENSFN 298
Query: 148 ------------------STEKELESLFVEVHFHHYKITPLFG-----LPSLIEVYP 181
T ++ + L ++ L SL+ + P
Sbjct: 299 EQFTELDLRMLVFLGGALRTREKWDGLAASAGLVVEEVRQLPSPTIPYDLSLLVLAP 355
|
| >3i53_A O-methyltransferase; CO-complex, rossmann-like fold; HET: SAH; 2.08A {Streptomyces carzinostaticus subsp} PDB: 3i58_A* 3i5u_A* 3i64_A* Length = 332 | Back alignment and structure |
|---|
Score = 96.9 bits (242), Expect = 1e-24
Identities = 32/228 (14%), Positives = 58/228 (25%), Gaps = 89/228 (39%)
Query: 1 FNQAVASDTQTVTASLALKYCKQIFERLGSLVDVG------------AFPCVKCTEFDQP 48
F+ ++ + +A KY + LG +VDVG A + T D
Sbjct: 146 FDTLMSHHLELDYTGIAAKY---DWAALGHVVDVGGGSGGLLSALLTAHEDLSGTVLDLQ 202
Query: 49 HVVANLLD-------TNNLKYLADDFFQSIPPVCMIPLRLGYSHIKIMIAFFIRLVVGRG 101
+ + + + FF +P G
Sbjct: 203 GPASAAHRRFLDTGLSGRAQVVVGSFFDPLPA--------GAGGY--------------- 239
Query: 102 RLHIFSWLNFMKRVINMQIIIHVFGDEESVKILKICREAITSKAKLS------------- 148
+ ++H + D +V IL+ C EA S +
Sbjct: 240 ---------VLSA------VLHDWDDLSAVAILRRCAEAAGSGGVVLVIEAVAGDEHAGT 284
Query: 149 ---------------TEKELESLFVEVHFHHYKITPLFGLPSLIEVYP 181
+ EL L + P+ S++E+
Sbjct: 285 GMDLRMLTYFGGKERSLAELGELAAQAGLAVRAAHPI-SYVSIVEMTA 331
|
| >1qzz_A RDMB, aclacinomycin-10-hydroxylase; anthracycline, methyltransferase, polyketide, tailoring enzymes, structural proteomics in E spine; HET: SAM; 2.10A {Streptomyces purpurascens} SCOP: a.4.5.29 c.66.1.12 PDB: 1r00_A* 1xds_A* 1xdu_A* Length = 374 | Back alignment and structure |
|---|
Score = 92.1 bits (229), Expect = 9e-23
Identities = 25/238 (10%), Positives = 54/238 (22%), Gaps = 98/238 (41%)
Query: 1 FNQAVASDTQTVTASLALKYCKQIFERLGSLVDVG------------AFPCVKCTEFDQP 48
F+ ++ D + A Y + + ++DVG P ++ T +
Sbjct: 159 FDALMSCDEDLAYEAPADAY---DWSAVRHVLDVGGGNGGMLAAIALRAPHLRGTLVELA 215
Query: 49 HVVAN-------LLDTNNLKYLADDFFQSIPPVCMIPLRLGYSHIKIMIAFFIRLVVGRG 101
+ + DFF+ +P +
Sbjct: 216 GPAERARRRFADAGLADRVTVAEGDFFKPLPV--------TADVV--------------- 252
Query: 102 RLHIFSWLNFMKRVINMQIIIHVFGDEESVKILKICREAITSKAKL-------------- 147
+ ++ + DE+++ IL+ C A+ +L
Sbjct: 253 ---------LLSF------VLLNWSDEDALTILRGCVRALEPGGRLLVLDRADVEGDGAD 297
Query: 148 -------------------STEKELESLFVEVHFHHYKITPLFGLP-----SLIEVYP 181
T E+ L S++E
Sbjct: 298 RFFSTLLDLRMLTFMGGRVRTRDEVVDLAGSAGLALASERTSGSTTLPFDFSILEFTA 355
|
| >2ip2_A Probable phenazine-specific methyltransferase; pyocyanin, phenazine-1-carboxy PHZM; 1.80A {Pseudomonas aeruginosa} Length = 334 | Back alignment and structure |
|---|
Score = 91.5 bits (228), Expect = 9e-23
Identities = 34/232 (14%), Positives = 58/232 (25%), Gaps = 95/232 (40%)
Query: 1 FNQAVASDTQTVTASLALKYCKQIFE-RLGSLVDVG------------AFPCVKCTEFDQ 47
F A+ + +LA ++ + R S VDVG A P + D+
Sbjct: 146 FLLAMKAS------NLAFHEIPRLLDFRGRSFVDVGGGSGELTKAILQAEPSARGVMLDR 199
Query: 48 PHVVAN-------LLDTNNLKYLADDFFQSIPPVCMIPLRLGYSHIKIMIAFFIRLVVGR 100
+ LL + + D Q +P
Sbjct: 200 EGSLGVARDNLSSLLAGERVSLVGGDMLQEVPS--------NGDIY-------------- 237
Query: 101 GRLHIFSWLNFMKRVINMQIIIHVFGDEESVKILKICREAITSKAKL------------- 147
+ R II + S+++L CREA+ ++
Sbjct: 238 ----------LLSR------IIGDLDEAASLRLLGNCREAMAGDGRVVVIERTISASEPS 281
Query: 148 ------------------STEKELESLFVEVHFHHYKITPLFGLPSLIEVYP 181
T +E+ L F +I L +I
Sbjct: 282 PMSVLWDVHLFMACAGRHRTTEEVVDLLGRGGFAVERIVDLPMETRMIVAAR 333
|
| >1x19_A CRTF-related protein; methyltransferase, bacteriochllochlorophyll, BCHU, SAM, SAH, adenosylmethyonine, S-adenosylhomocysteine, ADO-Met; 2.27A {Chlorobium tepidum} PDB: 1x1a_A* 1x1b_A* 1x1c_A* 1x1d_A* Length = 359 | Back alignment and structure |
|---|
Score = 90.5 bits (225), Expect = 3e-22
Identities = 22/234 (9%), Positives = 58/234 (24%), Gaps = 94/234 (40%)
Query: 1 FNQAVASDTQTVTASLALKYCKQIFERLGSLVDVG------------AFPCVKCTEFDQP 48
F + S+ + L + + + ++DVG FP + T + P
Sbjct: 167 FEEIHRSNAKFAIQLLLEEAK---LDGVKKMIDVGGGIGDISAAMLKHFPELDSTILNLP 223
Query: 49 HVVANLLD-------TNNLKYLADDFFQSIPPVCMIPLRLGYSHIKIMIAFFIRLVVGRG 101
+ + + + ++ +A D ++ P
Sbjct: 224 GAIDLVNENAAEKGVADRMRGIAVDIYKESYP--------------------------EA 257
Query: 102 RLHIFSWLNFMKRVINMQIIIHVFGDEESVKILKICREAITSKAKL-------------- 147
+F I++ ++ S + K +A+ S +L
Sbjct: 258 DAVLFCR------------ILYSANEQLSTIMCKKAFDAMRSGGRLLILDMVIDDPENPN 305
Query: 148 --------------------STEKELESLFVEVHFHHYKITPLFGLPSLIEVYP 181
+ + + + + + + + V P
Sbjct: 306 FDYLSHYILGAGMPFSVLGFKEQARYKEILESLGYKDVTMVRKYDHLLVQAVKP 359
|
| >2r3s_A Uncharacterized protein; methyltransferase domain, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE; 2.15A {Nostoc punctiforme} Length = 335 | Back alignment and structure |
|---|
Score = 67.0 bits (164), Expect = 8e-14
Identities = 25/229 (10%), Positives = 52/229 (22%), Gaps = 90/229 (39%)
Query: 1 FNQAVASDTQTVTASLALKYCKQIFERLGSLVDVG------------AFPCVKCTEFDQP 48
F +A++ +A + E L ++D+ P + D
Sbjct: 140 FAKAMSPMMANPAQLIAQLVNENKIEPL-KVLDISASHGLFGIAVAQHNPNAEIFGVDWA 198
Query: 49 HVVANLLD-------TNNLKYLADDFFQSIPPVCMIPLRLGYSHIKIMIAFFIRLVVGRG 101
V+ + + +A F+
Sbjct: 199 SVLEVAKENARIQGVASRYHTIAGSAFEVDYG-------------------------NDY 233
Query: 102 RLHIFSWLNFMKRVINMQIIIHVFGDEESVKILKICREAITSKAKL-------------- 147
L + +H F ++L+ + A+ + K+
Sbjct: 234 DLVLLPN------------FLHHFDVATCEQLLRKIKTALAVEGKVIVFDFIPNSDRITP 281
Query: 148 -------------------STEKELESLFVEVHFHHYKITPLFGLPSLI 177
T E ES+F F H ++ L +
Sbjct: 282 PDAAAFSLVMLATTPNGDAYTFAEYESMFSNAGFSHSQLHSLPTTQQQV 330
|
| >3mcz_A O-methyltransferase; adomet_mtases, S-adenosylmethionine-dependent methyltransfer structural genomics, PSI-2; HET: MSE; 1.90A {Burkholderia thailandensis} Length = 352 | Back alignment and structure |
|---|
Score = 66.3 bits (162), Expect = 2e-13
Identities = 16/166 (9%), Positives = 42/166 (25%), Gaps = 57/166 (34%)
Query: 1 FNQAVASDTQTVTASLALKYCKQIFERLGSLVDVG------------AFPCVKCTEFDQP 48
FN A+ +Q + ++ +F R +++D+ P + +D P
Sbjct: 156 FNDAMVRLSQPMVDVVSELG---VFARARTVIDLAGGHGTYLAQVLRRHPQLTGQIWDLP 212
Query: 49 HVVANLLDT-------NNLKYLADDFFQSIPPVCMIPLRLGYSHIKIMIAFFIRLVVGRG 101
T +++ + + G
Sbjct: 213 TTRDAARKTIHAHDLGGRVEFFEKNLLDARNFEG-----------------------GAA 249
Query: 102 RLHIFSWLNFMKRVINMQIIIHVFGDEESVKILKICREAITSKAKL 147
+ + + +H F E+ +++ + L
Sbjct: 250 DVVMLND------------CLHYFDAREAREVIGHAAGLVKPGGAL 283
|
| >3dp7_A SAM-dependent methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research; 2.33A {Bacteroides vulgatus} Length = 363 | Back alignment and structure |
|---|
Score = 60.5 bits (147), Expect = 2e-11
Identities = 24/235 (10%), Positives = 50/235 (21%), Gaps = 93/235 (39%)
Query: 1 FNQAVASDTQTVTASLALKYCKQIFERLGSLVDVG------------AFPCVKCTEFDQP 48
+ AL+ L+D+G V+ T D P
Sbjct: 155 SWFGFDHFYSDQSFGKALEIVF--SHHPKRLLDIGGNTGKWATQCVQYNKEVEVTIVDLP 212
Query: 49 HVVANLLDTNNLKYLAD-------DFFQSIPPVCMIPLRLGYSHIKIMIAFFIRLVVGRG 101
+ + ++ + P G+ +
Sbjct: 213 QQLEMMRKQTAGLSGSERIHGHGANLLDRDVPFPT-----GFDAV--------------- 252
Query: 102 RLHIFSWLNFMKRVINMQIIIHVFGDEESVKILKICREAITSKAKL-------------- 147
+M + + F +EE + IL ++I +K+
Sbjct: 253 ---------WMSQ------FLDCFSEEEVISILTRVAQSIGKDSKVYIMETLWDRQRYET 297
Query: 148 ----------------------STEKELESLFVEVHFHHYKITPLFGLP-SLIEV 179
+L +I GL S+++
Sbjct: 298 ASYCLTQISLYFTAMANGNSKMFHSDDLIRCIENAGLEVEEIQDNIGLGHSILQC 352
|
Structure Templates Detected by HHsearch 
Original result of HHsearch against PDB70 database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 181 | |||
| 4a6d_A | 353 | Hydroxyindole O-methyltransferase; melatonin, circ | 99.97 | |
| 3p9c_A | 364 | Caffeic acid O-methyltransferase; S-adenosylmethio | 99.94 | |
| 3reo_A | 368 | (ISO)eugenol O-methyltransferase; directed evoluti | 99.93 | |
| 3lst_A | 348 | CALO1 methyltransferase; calicheamicin, enediyne, | 99.9 | |
| 3gwz_A | 369 | MMCR; methyltransferase, mitomycin, S-adenosyl met | 99.9 | |
| 1zg3_A | 358 | Isoflavanone 4'-O-methyltransferase; rossman fold, | 99.9 | |
| 3i53_A | 332 | O-methyltransferase; CO-complex, rossmann-like fol | 99.89 | |
| 1fp2_A | 352 | Isoflavone O-methyltransferase; protein-product co | 99.88 | |
| 2ip2_A | 334 | Probable phenazine-specific methyltransferase; pyo | 99.87 | |
| 1fp1_D | 372 | Isoliquiritigenin 2'-O-methyltransferase; protein- | 99.86 | |
| 3dp7_A | 363 | SAM-dependent methyltransferase; structural genomi | 99.84 | |
| 1x19_A | 359 | CRTF-related protein; methyltransferase, bacterioc | 99.8 | |
| 3mcz_A | 352 | O-methyltransferase; adomet_mtases, S-adenosylmeth | 99.79 | |
| 1tw3_A | 360 | COMT, carminomycin 4-O-methyltransferase; anthracy | 99.79 | |
| 1qzz_A | 374 | RDMB, aclacinomycin-10-hydroxylase; anthracycline, | 99.78 | |
| 2r3s_A | 335 | Uncharacterized protein; methyltransferase domain, | 99.76 | |
| 3dtn_A | 234 | Putative methyltransferase MM_2633; structural gen | 99.12 | |
| 4gek_A | 261 | TRNA (CMO5U34)-methyltransferase; structural genom | 99.08 | |
| 1ve3_A | 227 | Hypothetical protein PH0226; dimer, riken structur | 99.05 | |
| 3dh0_A | 219 | SAM dependent methyltransferase; cystal structure, | 98.89 | |
| 3ou2_A | 218 | SAM-dependent methyltransferase; O-methyltransfera | 98.81 | |
| 1xtp_A | 254 | LMAJ004091AAA; SGPP, structural genomics, PSI, pro | 98.79 | |
| 3pfg_A | 263 | N-methyltransferase; N,N-dimethyltransferase, SAM | 98.79 | |
| 3hnr_A | 220 | Probable methyltransferase BT9727_4108; structural | 98.78 | |
| 3ujc_A | 266 | Phosphoethanolamine N-methyltransferase; parasite; | 98.78 | |
| 3lcc_A | 235 | Putative methyl chloride transferase; halide methy | 98.77 | |
| 3dlc_A | 219 | Putative S-adenosyl-L-methionine-dependent methylt | 98.76 | |
| 2qe6_A | 274 | Uncharacterized protein TFU_2867; putative methylt | 98.75 | |
| 3g2m_A | 299 | PCZA361.24; SAM-dependent methyltransferase, glyco | 98.72 | |
| 3ocj_A | 305 | Putative exported protein; structural genomics, PS | 98.69 | |
| 1vl5_A | 260 | Unknown conserved protein BH2331; putative methylt | 98.67 | |
| 3h2b_A | 203 | SAM-dependent methyltransferase; alpha-beta protei | 98.66 | |
| 1xxl_A | 239 | YCGJ protein; structural genomics, protein structu | 98.66 | |
| 3g5l_A | 253 | Putative S-adenosylmethionine dependent methyltran | 98.65 | |
| 3e23_A | 211 | Uncharacterized protein RPA2492; alpha-beta protei | 98.62 | |
| 2o57_A | 297 | Putative sarcosine dimethylglycine methyltransfera | 98.62 | |
| 3dli_A | 240 | Methyltransferase; PSI-II, NYSGXRC, structural gen | 98.61 | |
| 3mgg_A | 276 | Methyltransferase; NYSGXRC, PSI-II, protein struct | 98.6 | |
| 1kpg_A | 287 | CFA synthase;, cyclopropane-fatty-acyl-phospholipi | 98.59 | |
| 2ex4_A | 241 | Adrenal gland protein AD-003; methyltransferase, s | 98.57 | |
| 3vc1_A | 312 | Geranyl diphosphate 2-C-methyltransferase; rossman | 98.56 | |
| 3g07_A | 292 | 7SK snRNA methylphosphate capping enzyme; structur | 98.55 | |
| 3bxo_A | 239 | N,N-dimethyltransferase; desosamine, sugar, carboh | 98.54 | |
| 3sm3_A | 235 | SAM-dependent methyltransferases; NESG, structural | 98.54 | |
| 3jwg_A | 219 | HEN1, methyltransferase type 12; 1.90A {Clostridiu | 98.52 | |
| 3bus_A | 273 | REBM, methyltransferase; rebeccamycin synthesis; H | 98.52 | |
| 2p7i_A | 250 | Hypothetical protein; putative methyltransferase, | 98.51 | |
| 3f4k_A | 257 | Putative methyltransferase; structural genomics, P | 98.51 | |
| 3jwh_A | 217 | HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena | 98.5 | |
| 3l8d_A | 242 | Methyltransferase; structural genomics, PSI, nysgr | 98.49 | |
| 3i9f_A | 170 | Putative type 11 methyltransferase; structural gen | 98.49 | |
| 3cgg_A | 195 | SAM-dependent methyltransferase; NP_600671.1, meth | 98.48 | |
| 3kkz_A | 267 | Uncharacterized protein Q5LES9; putative methyltra | 98.47 | |
| 1nkv_A | 256 | Hypothetical protein YJHP; structural genomics, PS | 98.47 | |
| 3ege_A | 261 | Putative methyltransferase from antibiotic biosyn | 98.46 | |
| 4fsd_A | 383 | Arsenic methyltransferase; rossmann fold; 1.75A {C | 98.45 | |
| 3e8s_A | 227 | Putative SAM dependent methyltransferase; NP_74470 | 98.45 | |
| 3bkw_A | 243 | MLL3908 protein, S-adenosylmethionine dependent me | 98.43 | |
| 3grz_A | 205 | L11 mtase, ribosomal protein L11 methyltransferase | 98.41 | |
| 3hem_A | 302 | Cyclopropane-fatty-acyl-phospholipid synthase 2; p | 98.4 | |
| 1y8c_A | 246 | S-adenosylmethionine-dependent methyltransferase; | 98.37 | |
| 4htf_A | 285 | S-adenosylmethionine-dependent methyltransferase; | 98.36 | |
| 2fk8_A | 318 | Methoxy mycolic acid synthase 4; S-adenosylmethion | 98.35 | |
| 3cc8_A | 230 | Putative methyltransferase; structural genomics, j | 98.31 | |
| 2zfu_A | 215 | Nucleomethylin, cerebral protein 1; nucleolar prot | 98.3 | |
| 3gu3_A | 284 | Methyltransferase; alpha-beta protein, structural | 98.29 | |
| 3ccf_A | 279 | Cyclopropane-fatty-acyl-phospholipid synthase; YP_ | 98.26 | |
| 1ri5_A | 298 | MRNA capping enzyme; methyltransferase, M7G, messe | 98.25 | |
| 3d2l_A | 243 | SAM-dependent methyltransferase; ZP_00538691.1, st | 98.24 | |
| 2p35_A | 259 | Trans-aconitate 2-methyltransferase; SAM dependent | 98.18 | |
| 3bkx_A | 275 | SAM-dependent methyltransferase; YP_807781.1, cycl | 98.17 | |
| 3e05_A | 204 | Precorrin-6Y C5,15-methyltransferase (decarboxyla; | 98.17 | |
| 3ggd_A | 245 | SAM-dependent methyltransferase; YP_325210.1, stru | 98.12 | |
| 2p8j_A | 209 | S-adenosylmethionine-dependent methyltransferase; | 98.09 | |
| 2b3t_A | 276 | Protein methyltransferase HEMK; translation termin | 98.08 | |
| 3q87_B | 170 | N6 adenine specific DNA methylase; SAM-methyltrans | 98.06 | |
| 1vlm_A | 219 | SAM-dependent methyltransferase; possible histamin | 98.02 | |
| 2xvm_A | 199 | Tellurite resistance protein TEHB; antibiotic resi | 98.01 | |
| 1dus_A | 194 | MJ0882; hypothetical protein, methanococcus jannas | 97.95 | |
| 1pjz_A | 203 | Thiopurine S-methyltransferase; polymorphism, S-ad | 97.94 | |
| 2i62_A | 265 | Nicotinamide N-methyltransferase; structural genom | 97.91 | |
| 1wzn_A | 252 | SAM-dependent methyltransferase; structural genomi | 97.85 | |
| 3giw_A | 277 | Protein of unknown function DUF574; rossmann-fold | 97.84 | |
| 2g72_A | 289 | Phenylethanolamine N-methyltransferase; HET: SAM F | 97.79 | |
| 2a14_A | 263 | Indolethylamine N-methyltransferase; SGC,INMT, str | 97.78 | |
| 2yqz_A | 263 | Hypothetical protein TTHA0223; RNA methyltransfera | 97.77 | |
| 3thr_A | 293 | Glycine N-methyltransferase; GNMT, folate, methylt | 97.76 | |
| 3mq2_A | 218 | 16S rRNA methyltransferase; methyltranferase, ribo | 97.75 | |
| 1yb2_A | 275 | Hypothetical protein TA0852; structural genomics, | 97.71 | |
| 3hm2_A | 178 | Precorrin-6Y C5,15-methyltransferase; alpha-beta-s | 97.7 | |
| 3mb5_A | 255 | SAM-dependent methyltransferase; RNA methyltransfe | 97.69 | |
| 4dzr_A | 215 | Protein-(glutamine-N5) methyltransferase, release | 97.68 | |
| 2qm3_A | 373 | Predicted methyltransferase; putative methyltransf | 97.66 | |
| 2kw5_A | 202 | SLR1183 protein; structural genomics, northeast st | 97.66 | |
| 4e2x_A | 416 | TCAB9; kijanose, tetronitrose, tetradeoxy sugar, s | 97.65 | |
| 1fbn_A | 230 | MJ fibrillarin homologue; MJ proteins, ribosomal R | 97.65 | |
| 2pwy_A | 258 | TRNA (adenine-N(1)-)-methyltransferase; mtase, ado | 97.59 | |
| 3m70_A | 286 | Tellurite resistance protein TEHB homolog; structu | 97.57 | |
| 2h00_A | 254 | Methyltransferase 10 domain containing protein; st | 97.54 | |
| 2nxc_A | 254 | L11 mtase, ribosomal protein L11 methyltransferase | 97.54 | |
| 3bgv_A | 313 | MRNA CAP guanine-N7 methyltransferase; alternative | 97.52 | |
| 1l3i_A | 192 | Precorrin-6Y methyltransferase/putative decarboxyl | 97.46 | |
| 3bwc_A | 304 | Spermidine synthase; SAM, SGPP, structura genomics | 97.45 | |
| 2yxd_A | 183 | Probable cobalt-precorrin-6Y C(15)-methyltransfer | 97.41 | |
| 1o54_A | 277 | SAM-dependent O-methyltransferase; TM0748, structu | 97.4 | |
| 3m33_A | 226 | Uncharacterized protein; structural genomics, PSI- | 97.38 | |
| 3lpm_A | 259 | Putative methyltransferase; structural genomics, p | 97.38 | |
| 3g5t_A | 299 | Trans-aconitate 3-methyltransferase; structural ge | 97.37 | |
| 2ipx_A | 233 | RRNA 2'-O-methyltransferase fibrillarin; FBL, stru | 97.36 | |
| 3njr_A | 204 | Precorrin-6Y methylase; methyltransferase, decarbo | 97.31 | |
| 2gb4_A | 252 | Thiopurine S-methyltransferase; 18204406, thiopuri | 97.27 | |
| 3kr9_A | 225 | SAM-dependent methyltransferase; class I rossmann- | 97.21 | |
| 3lec_A | 230 | NADB-rossmann superfamily protein; PSI, MCSG, stru | 97.18 | |
| 2aot_A | 292 | HMT, histamine N-methyltransferase; classic methyl | 97.18 | |
| 3ofk_A | 216 | Nodulation protein S; NODS, N-methyltransferase, S | 97.16 | |
| 2pjd_A | 343 | Ribosomal RNA small subunit methyltransferase C; g | 97.15 | |
| 1jsx_A | 207 | Glucose-inhibited division protein B; methyltransf | 97.09 | |
| 1zx0_A | 236 | Guanidinoacetate N-methyltransferase; structural g | 97.08 | |
| 2ld4_A | 176 | Anamorsin; methyltransferase-like fold, alpha/beta | 96.97 | |
| 2gs9_A | 211 | Hypothetical protein TT1324; methyl transferase, s | 96.95 | |
| 3b3j_A | 480 | Histone-arginine methyltransferase CARM1; protein | 96.94 | |
| 1yzh_A | 214 | TRNA (guanine-N(7)-)-methyltransferase; alpha-beta | 96.9 | |
| 3evz_A | 230 | Methyltransferase; NYSGXRC, NEW YORK SGX research | 96.87 | |
| 3orh_A | 236 | Guanidinoacetate N-methyltransferase; structura ge | 96.84 | |
| 2ozv_A | 260 | Hypothetical protein ATU0636; structural genomics, | 96.83 | |
| 2vdw_A | 302 | Vaccinia virus capping enzyme D1 subunit; nucleoti | 96.78 | |
| 3gnl_A | 244 | Uncharacterized protein, DUF633, LMOF2365_1472; st | 96.78 | |
| 4hg2_A | 257 | Methyltransferase type 11; structural genomics, PS | 96.7 | |
| 1ej0_A | 180 | FTSJ; methyltransferase, adoMet, adenosyl methioni | 96.64 | |
| 3bzb_A | 281 | Uncharacterized protein; RED ALGA, protein structu | 96.61 | |
| 3p2e_A | 225 | 16S rRNA methylase; methyltransferase, transferase | 96.6 | |
| 4dcm_A | 375 | Ribosomal RNA large subunit methyltransferase G; 2 | 96.59 | |
| 1xdz_A | 240 | Methyltransferase GIDB; MCSG, protein structure in | 96.59 | |
| 2plw_A | 201 | Ribosomal RNA methyltransferase, putative; malaria | 96.55 | |
| 1af7_A | 274 | Chemotaxis receptor methyltransferase CHER; chemot | 96.53 | |
| 1g8a_A | 227 | Fibrillarin-like PRE-rRNA processing protein; rRNA | 96.5 | |
| 3duw_A | 223 | OMT, O-methyltransferase, putative; alternating of | 96.49 | |
| 3iei_A | 334 | Leucine carboxyl methyltransferase 1; LCMT-1, S-ad | 96.44 | |
| 3ntv_A | 232 | MW1564 protein; rossmann fold, putative methyltran | 96.42 | |
| 3hp7_A | 291 | Hemolysin, putative; structural genomics, APC64019 | 96.39 | |
| 2pxx_A | 215 | Uncharacterized protein MGC2408; structural genomi | 96.3 | |
| 3htx_A | 950 | HEN1; HEN1, small RNA methyltransferase, protein-R | 96.25 | |
| 3tfw_A | 248 | Putative O-methyltransferase; PSI-biology, nysgrc, | 96.22 | |
| 2avn_A | 260 | Ubiquinone/menaquinone biosynthesis methyltransfe | 96.22 | |
| 1ne2_A | 200 | Hypothetical protein TA1320; structural genomics, | 96.16 | |
| 2y1w_A | 348 | Histone-arginine methyltransferase CARM1; histone | 96.15 | |
| 2fca_A | 213 | TRNA (guanine-N(7)-)-methyltransferase; 2.10A {Bac | 96.12 | |
| 3eey_A | 197 | Putative rRNA methylase; rRNA methylation, S-adeno | 96.1 | |
| 3opn_A | 232 | Putative hemolysin; structural genomics, PSI-2, pr | 96.04 | |
| 3mti_A | 185 | RRNA methylase; SAM-dependent, PSI, MCSG, structur | 96.01 | |
| 1nv8_A | 284 | HEMK protein; class I adoMet-dependent methyltrans | 95.97 | |
| 3tr6_A | 225 | O-methyltransferase; cellular processes; HET: SAH; | 95.97 | |
| 1i9g_A | 280 | Hypothetical protein RV2118C; mtase, adoMet, cryst | 95.87 | |
| 1wy7_A | 207 | Hypothetical protein PH1948; seven-stranded beta s | 95.84 | |
| 3adn_A | 294 | Spermidine synthase; aminopropyltransferase, polya | 95.82 | |
| 2frn_A | 278 | Hypothetical protein PH0793; structural genomics, | 95.77 | |
| 3lcv_B | 281 | Sisomicin-gentamicin resistance methylase SGM; ant | 95.74 | |
| 4df3_A | 233 | Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; | 95.72 | |
| 2b25_A | 336 | Hypothetical protein; structural genomics, methyl | 95.7 | |
| 1ixk_A | 315 | Methyltransferase; open beta sheet; 1.90A {Pyrococ | 95.69 | |
| 3dou_A | 191 | Ribosomal RNA large subunit methyltransferase J; c | 95.65 | |
| 3u81_A | 221 | Catechol O-methyltransferase; neurotransmitter deg | 95.65 | |
| 2hnk_A | 239 | SAM-dependent O-methyltransferase; modified rossma | 95.52 | |
| 3iv6_A | 261 | Putative Zn-dependent alcohol dehydrogenase; alpha | 95.5 | |
| 2bm8_A | 236 | Cephalosporin hydroxylase CMCI; cephamycin biosynt | 95.5 | |
| 1rjd_A | 334 | PPM1P, carboxy methyl transferase for protein phos | 95.45 | |
| 3id6_C | 232 | Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; | 95.44 | |
| 3gdh_A | 241 | Trimethylguanosine synthase homolog; M7G, CAP, dim | 95.44 | |
| 1nt2_A | 210 | Fibrillarin-like PRE-rRNA processing protein; adeM | 95.41 | |
| 3r3h_A | 242 | O-methyltransferase, SAM-dependent; structural gen | 95.37 | |
| 3uwp_A | 438 | Histone-lysine N-methyltransferase, H3 lysine-79; | 95.33 | |
| 3c3p_A | 210 | Methyltransferase; NP_951602.1, structural genomic | 95.25 | |
| 1iy9_A | 275 | Spermidine synthase; rossmann fold, structural gen | 95.24 | |
| 3dmg_A | 381 | Probable ribosomal RNA small subunit methyltransf; | 95.19 | |
| 2yvl_A | 248 | TRMI protein, hypothetical protein; tRNA, methyltr | 95.17 | |
| 3g89_A | 249 | Ribosomal RNA small subunit methyltransferase G; 1 | 95.11 | |
| 2gpy_A | 233 | O-methyltransferase; structural genomics, PSI, pro | 95.07 | |
| 2uyo_A | 310 | Hypothetical protein ML2640; putative methyltransf | 95.07 | |
| 2i7c_A | 283 | Spermidine synthase; transferase, structural genom | 95.04 | |
| 1inl_A | 296 | Spermidine synthase; beta-barrel, rossman fold, st | 94.98 | |
| 2avd_A | 229 | Catechol-O-methyltransferase; structural genomics, | 94.98 | |
| 2vdv_E | 246 | TRNA (guanine-N(7)-)-methyltransferase; S-adenosyl | 94.88 | |
| 1mjf_A | 281 | Spermidine synthase; spermidine synthetase, struct | 94.61 | |
| 1g6q_1 | 328 | HnRNP arginine N-methyltransferase; SAM-binding do | 94.38 | |
| 3ckk_A | 235 | TRNA (guanine-N(7)-)-methyltransferase; mettl1, S- | 94.34 | |
| 3dr5_A | 221 | Putative O-methyltransferase; Q8NRD3, CGL1119, PF0 | 94.31 | |
| 2pt6_A | 321 | Spermidine synthase; transferase, structural genom | 94.23 | |
| 1jg1_A | 235 | PIMT;, protein-L-isoaspartate O-methyltransferase; | 94.13 | |
| 2yxe_A | 215 | Protein-L-isoaspartate O-methyltransferase; rossma | 94.03 | |
| 3fpf_A | 298 | Mtnas, putative uncharacterized protein; thermonic | 93.92 | |
| 3fzg_A | 200 | 16S rRNA methylase; methyltransferase, plasmid, tr | 93.85 | |
| 2fyt_A | 340 | Protein arginine N-methyltransferase 3; structural | 93.84 | |
| 3q7e_A | 349 | Protein arginine N-methyltransferase 1; HET: SAH; | 93.79 | |
| 3tma_A | 354 | Methyltransferase; thump domain; 2.05A {Thermus th | 93.78 | |
| 3lbf_A | 210 | Protein-L-isoaspartate O-methyltransferase; modifi | 93.66 | |
| 2nyu_A | 196 | Putative ribosomal RNA methyltransferase 2; SAM, s | 93.65 | |
| 3c3y_A | 237 | Pfomt, O-methyltransferase; plant secondary metabo | 93.63 | |
| 3gjy_A | 317 | Spermidine synthase; APC62791, structural genomics | 93.6 | |
| 2xyq_A | 290 | Putative 2'-O-methyl transferase; transferase-vira | 93.54 | |
| 1p91_A | 269 | Ribosomal RNA large subunit methyltransferase A; R | 93.17 | |
| 2b2c_A | 314 | Spermidine synthase; beta-alpha, transferase; 2.50 | 92.98 | |
| 1o9g_A | 250 | RRNA methyltransferase; antibiotic resistance, Se- | 92.96 | |
| 1zq9_A | 285 | Probable dimethyladenosine transferase; SGC, struc | 92.87 | |
| 3r0q_C | 376 | Probable protein arginine N-methyltransferase 4.2; | 92.86 | |
| 1sui_A | 247 | Caffeoyl-COA O-methyltransferase; rossmann fold, p | 92.6 | |
| 3k6r_A | 278 | Putative transferase PH0793; structural genomics, | 92.35 | |
| 3p9n_A | 189 | Possible methyltransferase (methylase); RV2966C, a | 92.21 | |
| 1uir_A | 314 | Polyamine aminopropyltransferase; spermidien synth | 92.1 | |
| 2fhp_A | 187 | Methylase, putative; alpha-beta-alpha sandwich, st | 92.04 | |
| 2ih2_A | 421 | Modification methylase TAQI; DNA, DNA methyltransf | 91.9 | |
| 1ws6_A | 171 | Methyltransferase; structural genomics, riken stru | 91.4 | |
| 3cbg_A | 232 | O-methyltransferase; cyanobacterium; HET: SAH FER | 91.3 | |
| 2esr_A | 177 | Methyltransferase; structural genomics, hypothetic | 91.26 | |
| 3frh_A | 253 | 16S rRNA methylase; methyltransferase domain, heli | 91.2 | |
| 3dxy_A | 218 | TRNA (guanine-N(7)-)-methyltransferase; rossmann f | 91.15 | |
| 2yxl_A | 450 | PH0851 protein, 450AA long hypothetical FMU protei | 91.14 | |
| 1vbf_A | 231 | 231AA long hypothetical protein-L-isoaspartate O- | 91.07 | |
| 1u2z_A | 433 | Histone-lysine N-methyltransferase, H3 lysine-79 s | 90.8 | |
| 1dl5_A | 317 | Protein-L-isoaspartate O-methyltransferase; isoasp | 90.47 | |
| 2o07_A | 304 | Spermidine synthase; structural genomics, structur | 90.3 | |
| 1sqg_A | 429 | SUN protein, FMU protein; rossmann-fold, mixed bet | 89.91 | |
| 3tm4_A | 373 | TRNA (guanine N2-)-methyltransferase TRM14; rossma | 89.84 | |
| 1uwv_A | 433 | 23S rRNA (uracil-5-)-methyltransferase RUMA; RNA m | 89.82 | |
| 2zwa_A | 695 | Leucine carboxyl methyltransferase 2; HET: SAH CIT | 89.7 | |
| 3ajd_A | 274 | Putative methyltransferase MJ0026; tRNA, M5C, ross | 89.41 | |
| 1xj5_A | 334 | Spermidine synthase 1; structural genomics, protei | 89.38 | |
| 3a27_A | 272 | TYW2, uncharacterized protein MJ1557; wybutosine m | 88.97 | |
| 3b5i_A | 374 | S-adenosyl-L-methionine:salicylic acid carboxyl me | 88.87 | |
| 2igt_A | 332 | SAM dependent methyltransferase; alpha-beta sandwi | 88.32 | |
| 2cmg_A | 262 | Spermidine synthase; transferase, putrescine amino | 87.72 | |
| 2pbf_A | 227 | Protein-L-isoaspartate O-methyltransferase beta-A | 87.47 | |
| 2p41_A | 305 | Type II methyltransferase; vizier, viral enzymes i | 85.41 | |
| 2qy6_A | 257 | UPF0209 protein YFCK; structural genomics, unknown | 85.15 | |
| 1m6y_A | 301 | S-adenosyl-methyltransferase MRAW; SAM-dependent m | 84.31 | |
| 3o4f_A | 294 | Spermidine synthase; aminopropyltransferase, polya | 83.9 | |
| 1r18_A | 227 | Protein-L-isoaspartate(D-aspartate)-O-methyltrans; | 83.52 | |
| 2h1r_A | 299 | Dimethyladenosine transferase, putative; SGC toron | 83.46 | |
| 2yx1_A | 336 | Hypothetical protein MJ0883; methyl transferase, t | 83.23 | |
| 3m4x_A | 456 | NOL1/NOP2/SUN family protein; mtase domain, PUA do | 82.88 | |
| 2frx_A | 479 | Hypothetical protein YEBU; rossmann-type S-adenosy | 82.56 | |
| 2ift_A | 201 | Putative methylase HI0767; NESG, Y767_haein, struc | 82.08 | |
| 2f8l_A | 344 | Hypothetical protein LMO1582; structural genomics, | 81.74 | |
| 2as0_A | 396 | Hypothetical protein PH1915; RNA methyltransferase | 81.74 | |
| 1i1n_A | 226 | Protein-L-isoaspartate O-methyltransferase; S-aden | 81.33 | |
| 3m6w_A | 464 | RRNA methylase; rRNA methyltransferase, 5-methylcy | 81.17 | |
| 2oxt_A | 265 | Nucleoside-2'-O-methyltransferase; flavivirus, vir | 80.73 |
| >4a6d_A Hydroxyindole O-methyltransferase; melatonin, circadian clock; HET: SAM; 2.40A {Homo sapiens} PDB: 4a6e_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=2.3e-31 Score=231.01 Aligned_cols=139 Identities=18% Similarity=0.265 Sum_probs=130.1
Q ss_pred ChHHHhhccccchhHHHHHHhhhhhcCCCeEEEec------------CCCCceEEEeechhhhhhhcc------CCCceE
Q 036440 1 FNQAVASDTQTVTASLALKYCKQIFERLGSLVDVG------------AFPCVKCTEFDQPHVVANLLD------TNNLKY 62 (181)
Q Consensus 1 F~~aM~~~s~~~~~~~~l~~~~~d~~~~~~lvDvG------------~~P~l~~~~~DlP~Vv~~a~~------~~ri~~ 62 (181)
|+++|.+.+.... +.+++.| ||++.++||||| +||+++++++|+|+|++.++. .+||++
T Consensus 156 f~~aM~~~~~~~~-~~~~~~~--~~~~~~~v~DvGgG~G~~~~~l~~~~p~~~~~~~dlp~v~~~a~~~~~~~~~~rv~~ 232 (353)
T 4a6d_A 156 FMQALQEVWSVNG-RSVLTAF--DLSVFPLMCDLGGGAGALAKECMSLYPGCKITVFDIPEVVWTAKQHFSFQEEEQIDF 232 (353)
T ss_dssp HHHHHHTTHHHHH-HHHHHSS--CGGGCSEEEEETCTTSHHHHHHHHHCSSCEEEEEECHHHHHHHHHHSCC--CCSEEE
T ss_pred HHHHHHHHHHHHH-HHHHHhc--CcccCCeEEeeCCCCCHHHHHHHHhCCCceeEeccCHHHHHHHHHhhhhcccCceee
Confidence 6889998888877 8899999 899999999999 999999999999999987752 689999
Q ss_pred EecCCCCC-CCCcceEeccccchhhhHHhhhhhhhhcCCCccchhhhhhcccccceeeeeeccCChHHHHHHHHHHHHHh
Q 036440 63 LADDFFQS-IPPVCMIPLRLGYSHIKIMIAFFIRLVVGRGRLHIFSWLNFMKRVINMQIIIHVFGDEESVKILKICREAI 141 (181)
Q Consensus 63 ~~gDff~~-~P~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~iLHdw~D~~~~~iL~~~~~a~ 141 (181)
++||||++ .|.+|+| ++++|||||+|++|++||++|+++|
T Consensus 233 ~~gD~~~~~~~~~D~~---------------------------------------~~~~vlh~~~d~~~~~iL~~~~~al 273 (353)
T 4a6d_A 233 QEGDFFKDPLPEADLY---------------------------------------ILARVLHDWADGKCSHLLERIYHTC 273 (353)
T ss_dssp EESCTTTSCCCCCSEE---------------------------------------EEESSGGGSCHHHHHHHHHHHHHHC
T ss_pred ecCccccCCCCCceEE---------------------------------------EeeeecccCCHHHHHHHHHHHHhhC
Confidence 99999975 5669999 9999999999999999999999999
Q ss_pred ccCC--------------------------------ccCCHHHHHHHHHhCCCeEEEEEEcCCCCeEEEEEC
Q 036440 142 TSKA--------------------------------KLSTEKELESLFVEVHFHHYKITPLFGLPSLIEVYP 181 (181)
Q Consensus 142 ~~~g--------------------------------~eRt~~E~~~Ll~~aGf~~~~i~~~~~~~~viE~~~ 181 (181)
+||| +|||.+||++||++|||++++++++++..++||++|
T Consensus 274 ~pgg~lli~e~~~~~~~~~~~~~~~~dl~ml~~~~g~ert~~e~~~ll~~AGf~~v~v~~~~~~~~~i~ArK 345 (353)
T 4a6d_A 274 KPGGGILVIESLLDEDRRGPLLTQLYSLNMLVQTEGQERTPTHYHMLLSSAGFRDFQFKKTGAIYDAILARK 345 (353)
T ss_dssp CTTCEEEEEECCCCTTSCCCHHHHHHHHHHHHSSSCCCCCHHHHHHHHHHHTCEEEEEECCSSSCEEEEEEC
T ss_pred CCCCEEEEEEeeeCCCCCCCHHHHHHHHHHHHhCCCcCCCHHHHHHHHHHCCCceEEEEEcCCceEEEEEEe
Confidence 9999 899999999999999999999999999999999986
|
| >3p9c_A Caffeic acid O-methyltransferase; S-adenosylmethionine dependent O-methyltransferase; HET: SAH; 1.80A {Lolium perenne} PDB: 3p9i_A* 3p9k_A* | Back alignment and structure |
|---|
Probab=99.94 E-value=2.8e-26 Score=199.82 Aligned_cols=140 Identities=29% Similarity=0.479 Sum_probs=131.0
Q ss_pred ChHHHhhccccchhHHHHHHhhhhhcCCCeEEEec------------CCCCceEEEeechhhhhhhccCCCceEEecCCC
Q 036440 1 FNQAVASDTQTVTASLALKYCKQIFERLGSLVDVG------------AFPCVKCTEFDQPHVVANLLDTNNLKYLADDFF 68 (181)
Q Consensus 1 F~~aM~~~s~~~~~~~~l~~~~~d~~~~~~lvDvG------------~~P~l~~~~~DlP~Vv~~a~~~~ri~~~~gDff 68 (181)
|+++|+..+.... +.+++.|+ +|+...+||||| +||+++++++|+|++++.+...+||+++.+|||
T Consensus 177 f~~~m~~~~~~~~-~~~~~~~~-~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~~v~~~~~D~~ 254 (364)
T 3p9c_A 177 FNEGMKNHSIIIT-KKLLELYH-GFEGLGTLVDVGGGVGATVAAIAAHYPTIKGVNFDLPHVISEAPQFPGVTHVGGDMF 254 (364)
T ss_dssp HHHHHHHHHHHHH-HHHHHHCC-TTTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEECHHHHTTCCCCTTEEEEECCTT
T ss_pred HHHHHHHhhHHHH-HHHHHhcc-cccCCCEEEEeCCCCCHHHHHHHHHCCCCeEEEecCHHHHHhhhhcCCeEEEeCCcC
Confidence 6788988877766 78899994 399999999999 899999999999999999988899999999999
Q ss_pred CCCCCcceEeccccchhhhHHhhhhhhhhcCCCccchhhhhhcccccceeeeeeccCChHHHHHHHHHHHHHhccCC---
Q 036440 69 QSIPPVCMIPLRLGYSHIKIMIAFFIRLVVGRGRLHIFSWLNFMKRVINMQIIIHVFGDEESVKILKICREAITSKA--- 145 (181)
Q Consensus 69 ~~~P~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~iLHdw~D~~~~~iL~~~~~a~~~~g--- 145 (181)
+++|.+|+| +++++||+|+|+++.++|++++++|+|||
T Consensus 255 ~~~p~~D~v---------------------------------------~~~~vlh~~~d~~~~~~L~~~~~~L~pgG~l~ 295 (364)
T 3p9c_A 255 KEVPSGDTI---------------------------------------LMKWILHDWSDQHCATLLKNCYDALPAHGKVV 295 (364)
T ss_dssp TCCCCCSEE---------------------------------------EEESCGGGSCHHHHHHHHHHHHHHSCTTCEEE
T ss_pred CCCCCCCEE---------------------------------------EehHHhccCCHHHHHHHHHHHHHHcCCCCEEE
Confidence 988888999 99999999999999999999999999999
Q ss_pred ---------------------------------ccCCHHHHHHHHHhCCCeEEEEEEcCCCCeEEEEEC
Q 036440 146 ---------------------------------KLSTEKELESLFVEVHFHHYKITPLFGLPSLIEVYP 181 (181)
Q Consensus 146 ---------------------------------~eRt~~E~~~Ll~~aGf~~~~i~~~~~~~~viE~~~ 181 (181)
++||.+||+++|++|||+.+++.++++..++||+||
T Consensus 296 i~e~~~~~~~~~~~~~~~~~~~d~~m~~~~~~g~~rt~~e~~~ll~~AGF~~v~~~~~~~~~~vie~~k 364 (364)
T 3p9c_A 296 LVQCILPVNPEANPSSQGVFHVDMIMLAHNPGGRERYEREFQALARGAGFTGVKSTYIYANAWAIEFTK 364 (364)
T ss_dssp EEECCBCSSCCSSHHHHHHHHHHHHHHHHCSSCCCCBHHHHHHHHHHTTCCEEEEEEEETTEEEEEEEC
T ss_pred EEEeccCCCCCcchhhhhHHHhHHHHHhcccCCccCCHHHHHHHHHHCCCceEEEEEcCCceEEEEEeC
Confidence 689999999999999999999999999999999997
|
| >3reo_A (ISO)eugenol O-methyltransferase; directed evolution, saturation mutagenesis, regioselectivity transferase; HET: SAH EUG; 1.90A {Clarkia breweri} PDB: 3tky_A* 1kyz_A* 1kyw_A* | Back alignment and structure |
|---|
Probab=99.93 E-value=1.5e-25 Score=195.21 Aligned_cols=140 Identities=29% Similarity=0.482 Sum_probs=130.7
Q ss_pred ChHHHhhccccchhHHHHHHhhhhhcCCCeEEEec------------CCCCceEEEeechhhhhhhccCCCceEEecCCC
Q 036440 1 FNQAVASDTQTVTASLALKYCKQIFERLGSLVDVG------------AFPCVKCTEFDQPHVVANLLDTNNLKYLADDFF 68 (181)
Q Consensus 1 F~~aM~~~s~~~~~~~~l~~~~~d~~~~~~lvDvG------------~~P~l~~~~~DlP~Vv~~a~~~~ri~~~~gDff 68 (181)
|+++|++.+.... +.+++.|+ +|++..+||||| +||+++++++|+|++++.+...+||+++.+|||
T Consensus 179 f~~~m~~~~~~~~-~~~~~~~~-~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~~v~~~~~d~~ 256 (368)
T 3reo_A 179 FNKGMSSNSTITM-KKILEMYN-GFEGLTTIVDVGGGTGAVASMIVAKYPSINAINFDLPHVIQDAPAFSGVEHLGGDMF 256 (368)
T ss_dssp HHHHHHHHHHHHH-HHHHTTCC-TTTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEECHHHHTTCCCCTTEEEEECCTT
T ss_pred HHHHHHhhhhhHH-HHHHHhcc-cccCCCEEEEeCCCcCHHHHHHHHhCCCCEEEEEehHHHHHhhhhcCCCEEEecCCC
Confidence 6788988887766 78889884 389999999999 899999999999999999988899999999999
Q ss_pred CCCCCcceEeccccchhhhHHhhhhhhhhcCCCccchhhhhhcccccceeeeeeccCChHHHHHHHHHHHHHhccCC---
Q 036440 69 QSIPPVCMIPLRLGYSHIKIMIAFFIRLVVGRGRLHIFSWLNFMKRVINMQIIIHVFGDEESVKILKICREAITSKA--- 145 (181)
Q Consensus 69 ~~~P~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~iLHdw~D~~~~~iL~~~~~a~~~~g--- 145 (181)
+++|.+|+| +++++||+|+|+++.++|++++++|+|||
T Consensus 257 ~~~p~~D~v---------------------------------------~~~~vlh~~~~~~~~~~l~~~~~~L~pgG~l~ 297 (368)
T 3reo_A 257 DGVPKGDAI---------------------------------------FIKWICHDWSDEHCLKLLKNCYAALPDHGKVI 297 (368)
T ss_dssp TCCCCCSEE---------------------------------------EEESCGGGBCHHHHHHHHHHHHHHSCTTCEEE
T ss_pred CCCCCCCEE---------------------------------------EEechhhcCCHHHHHHHHHHHHHHcCCCCEEE
Confidence 989988999 99999999999999999999999999999
Q ss_pred ---------------------------------ccCCHHHHHHHHHhCCCeEEEEEEcCCCCeEEEEEC
Q 036440 146 ---------------------------------KLSTEKELESLFVEVHFHHYKITPLFGLPSLIEVYP 181 (181)
Q Consensus 146 ---------------------------------~eRt~~E~~~Ll~~aGf~~~~i~~~~~~~~viE~~~ 181 (181)
++||.+||+++|++|||+.+++.+..+..++||+||
T Consensus 298 i~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~g~~rt~~e~~~ll~~AGF~~v~~~~~~~~~~vie~~k 366 (368)
T 3reo_A 298 VAEYILPPSPDPSIATKVVIHTDALMLAYNPGGKERTEKEFQALAMASGFRGFKVASCAFNTYVMEFLK 366 (368)
T ss_dssp EEECCCCSSCCCCHHHHHHHHHHHHHHHHSSBCCCCCHHHHHHHHHHTTCCEEEEEEEETTEEEEEEEC
T ss_pred EEEeccCCCCCCchhhhHHHhhhHHHHhhcCCCccCCHHHHHHHHHHCCCeeeEEEEeCCCcEEEEEEe
Confidence 689999999999999999999999999999999997
|
| >3lst_A CALO1 methyltransferase; calicheamicin, enediyne, SAH, STRU genomics, PSI-2, protein structure initiative; HET: SAH; 2.40A {Micromonospora echinospora} | Back alignment and structure |
|---|
Probab=99.90 E-value=2.8e-23 Score=178.32 Aligned_cols=139 Identities=24% Similarity=0.388 Sum_probs=127.2
Q ss_pred ChHHHhhccccchhHHHHHHhhhhhcCCCeEEEec------------CCCCceEEEeechhhhhhhc-----cCCCceEE
Q 036440 1 FNQAVASDTQTVTASLALKYCKQIFERLGSLVDVG------------AFPCVKCTEFDQPHVVANLL-----DTNNLKYL 63 (181)
Q Consensus 1 F~~aM~~~s~~~~~~~~l~~~~~d~~~~~~lvDvG------------~~P~l~~~~~DlP~Vv~~a~-----~~~ri~~~ 63 (181)
|+++|++.+.... +.+++.+ +|+...+||||| ++|+++++++|+|+++..+. ..+||+++
T Consensus 161 f~~~m~~~~~~~~-~~~~~~~--~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~~~~~~~~~~~~v~~~ 237 (348)
T 3lst_A 161 YYEGMETVSAAEH-LILARAG--DFPATGTVADVGGGRGGFLLTVLREHPGLQGVLLDRAEVVARHRLDAPDVAGRWKVV 237 (348)
T ss_dssp HHHHHHHHHHTTH-HHHHHHS--CCCSSEEEEEETCTTSHHHHHHHHHCTTEEEEEEECHHHHTTCCCCCGGGTTSEEEE
T ss_pred HHHHHHHhhhhhH-HHHHHhC--CccCCceEEEECCccCHHHHHHHHHCCCCEEEEecCHHHhhcccccccCCCCCeEEE
Confidence 5788988888777 8899999 899999999999 89999999999999887332 36799999
Q ss_pred ecCCCCCCCCcceEeccccchhhhHHhhhhhhhhcCCCccchhhhhhcccccceeeeeeccCChHHHHHHHHHHHHHhcc
Q 036440 64 ADDFFQSIPPVCMIPLRLGYSHIKIMIAFFIRLVVGRGRLHIFSWLNFMKRVINMQIIIHVFGDEESVKILKICREAITS 143 (181)
Q Consensus 64 ~gDff~~~P~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~iLHdw~D~~~~~iL~~~~~a~~~ 143 (181)
.+|+|+++|..|+| +++++||+|+|+++.++|++++.+++|
T Consensus 238 ~~d~~~~~p~~D~v---------------------------------------~~~~vlh~~~d~~~~~~L~~~~~~Lkp 278 (348)
T 3lst_A 238 EGDFLREVPHADVH---------------------------------------VLKRILHNWGDEDSVRILTNCRRVMPA 278 (348)
T ss_dssp ECCTTTCCCCCSEE---------------------------------------EEESCGGGSCHHHHHHHHHHHHHTCCT
T ss_pred ecCCCCCCCCCcEE---------------------------------------EEehhccCCCHHHHHHHHHHHHHhcCC
Confidence 99999889988999 999999999999999999999999999
Q ss_pred CC-------------------------------ccCCHHHHHHHHHhCCCeEEEEEEcCCCCeEEEEEC
Q 036440 144 KA-------------------------------KLSTEKELESLFVEVHFHHYKITPLFGLPSLIEVYP 181 (181)
Q Consensus 144 ~g-------------------------------~eRt~~E~~~Ll~~aGf~~~~i~~~~~~~~viE~~~ 181 (181)
|| ++||.+||+++|++|||+++++++..+..++||++|
T Consensus 279 gG~l~i~e~~~~~~~~~~~~~~~d~~~~~~~~~~~~t~~e~~~ll~~aGf~~~~~~~~~~~~~vie~~p 347 (348)
T 3lst_A 279 HGRVLVIDAVVPEGNDAHQSKEMDFMMLAARTGQERTAAELEPLFTAAGLRLDRVVGTSSVMSIAVGVP 347 (348)
T ss_dssp TCEEEEEECCBCSSSSCCHHHHHHHHHHHTTSCCCCBHHHHHHHHHHTTEEEEEEEECSSSCEEEEEEE
T ss_pred CCEEEEEEeccCCCCCcchhhhcChhhhhcCCCcCCCHHHHHHHHHHCCCceEEEEECCCCcEEEEEEe
Confidence 99 579999999999999999999999878899999987
|
| >3gwz_A MMCR; methyltransferase, mitomycin, S-adenosyl methionine, transferase; HET: MSE SAH; 1.91A {Streptomyces lavendulae} PDB: 3gxo_A* | Back alignment and structure |
|---|
Probab=99.90 E-value=3.8e-23 Score=179.44 Aligned_cols=139 Identities=24% Similarity=0.394 Sum_probs=126.7
Q ss_pred ChHHHhhccccchhHHHHHHhhhhhcCCCeEEEec------------CCCCceEEEeechhhhhhhcc-------CCCce
Q 036440 1 FNQAVASDTQTVTASLALKYCKQIFERLGSLVDVG------------AFPCVKCTEFDQPHVVANLLD-------TNNLK 61 (181)
Q Consensus 1 F~~aM~~~s~~~~~~~~l~~~~~d~~~~~~lvDvG------------~~P~l~~~~~DlP~Vv~~a~~-------~~ri~ 61 (181)
|+++|...+.... +.+++.+ +|++..+||||| +||+++++++|+|.+++.+.. .+||+
T Consensus 179 f~~~m~~~~~~~~-~~l~~~~--~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~~~~~l~~~v~ 255 (369)
T 3gwz_A 179 FNRAMGSVSLTEA-GQVAAAY--DFSGAATAVDIGGGRGSLMAAVLDAFPGLRGTLLERPPVAEEARELLTGRGLADRCE 255 (369)
T ss_dssp HHHHHHHHHHHHH-HHHHHHS--CCTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEECHHHHHHHHHHHHHTTCTTTEE
T ss_pred HHHHHHHHHhhhH-HHHHHhC--CCccCcEEEEeCCCccHHHHHHHHHCCCCeEEEEcCHHHHHHHHHhhhhcCcCCceE
Confidence 5678888777766 8889999 799999999999 899999999999999887752 58999
Q ss_pred EEecCCCCCCC-CcceEeccccchhhhHHhhhhhhhhcCCCccchhhhhhcccccceeeeeeccCChHHHHHHHHHHHHH
Q 036440 62 YLADDFFQSIP-PVCMIPLRLGYSHIKIMIAFFIRLVVGRGRLHIFSWLNFMKRVINMQIIIHVFGDEESVKILKICREA 140 (181)
Q Consensus 62 ~~~gDff~~~P-~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~iLHdw~D~~~~~iL~~~~~a 140 (181)
++.+|+++++| ..|+| +++++||+|+|+++.++|++++.+
T Consensus 256 ~~~~d~~~~~p~~~D~v---------------------------------------~~~~vlh~~~d~~~~~~L~~~~~~ 296 (369)
T 3gwz_A 256 ILPGDFFETIPDGADVY---------------------------------------LIKHVLHDWDDDDVVRILRRIATA 296 (369)
T ss_dssp EEECCTTTCCCSSCSEE---------------------------------------EEESCGGGSCHHHHHHHHHHHHTT
T ss_pred EeccCCCCCCCCCceEE---------------------------------------EhhhhhccCCHHHHHHHHHHHHHH
Confidence 99999998888 48999 999999999999999999999999
Q ss_pred hccCC------------------------------ccCCHHHHHHHHHhCCCeEEEEEE-cCCCCeEEEEEC
Q 036440 141 ITSKA------------------------------KLSTEKELESLFVEVHFHHYKITP-LFGLPSLIEVYP 181 (181)
Q Consensus 141 ~~~~g------------------------------~eRt~~E~~~Ll~~aGf~~~~i~~-~~~~~~viE~~~ 181 (181)
|+||| ++||.+||+++|++|||+++++++ ..+..++||++|
T Consensus 297 L~pgG~l~i~e~~~~~~~~~~~~~~d~~~~~~~~g~~~t~~e~~~ll~~aGf~~~~~~~~~~~~~svie~~~ 368 (369)
T 3gwz_A 297 MKPDSRLLVIDNLIDERPAASTLFVDLLLLVLVGGAERSESEFAALLEKSGLRVERSLPCGAGPVRIVEIRR 368 (369)
T ss_dssp CCTTCEEEEEEEBCCSSCCHHHHHHHHHHHHHHSCCCBCHHHHHHHHHTTTEEEEEEEECSSSSEEEEEEEE
T ss_pred cCCCCEEEEEEeccCCCCCCchhHhhHHHHhhcCCccCCHHHHHHHHHHCCCeEEEEEECCCCCcEEEEEEe
Confidence 99999 569999999999999999999999 677889999987
|
| >1zg3_A Isoflavanone 4'-O-methyltransferase; rossman fold, plant Pro transferase; HET: 2HI SAH; 2.35A {Medicago truncatula} PDB: 1zga_A* 1zhf_A* 1zgj_A* | Back alignment and structure |
|---|
Probab=99.90 E-value=4.5e-23 Score=177.31 Aligned_cols=140 Identities=48% Similarity=0.785 Sum_probs=125.5
Q ss_pred ChHHHhhccccchhHHHHHHhhhhhcCCCeEEEec------------CCCCceEEEeechhhhhhhccCCCceEEecCCC
Q 036440 1 FNQAVASDTQTVTASLALKYCKQIFERLGSLVDVG------------AFPCVKCTEFDQPHVVANLLDTNNLKYLADDFF 68 (181)
Q Consensus 1 F~~aM~~~s~~~~~~~~l~~~~~d~~~~~~lvDvG------------~~P~l~~~~~DlP~Vv~~a~~~~ri~~~~gDff 68 (181)
|+++|.+.+.... .+++.|+++|++..+||||| ++|+++++++|+|++++.+...++++++.+|++
T Consensus 169 f~~~m~~~~~~~~--~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~~v~~~~~d~~ 246 (358)
T 1zg3_A 169 FQDAMASDSRMFK--LVLQENKRVFEGLESLVDVGGGTGGVTKLIHEIFPHLKCTVFDQPQVVGNLTGNENLNFVGGDMF 246 (358)
T ss_dssp HHHHHHHHHHTHH--HHHHHTHHHHHTCSEEEEETCTTSHHHHHHHHHCTTSEEEEEECHHHHSSCCCCSSEEEEECCTT
T ss_pred HHHHHhcccHHHH--HHHHhcchhccCCCEEEEECCCcCHHHHHHHHHCCCCeEEEeccHHHHhhcccCCCcEEEeCccC
Confidence 5677877665543 67888855788999999999 799999999999999988876677999999999
Q ss_pred CCCCCcceEeccccchhhhHHhhhhhhhhcCCCccchhhhhhcccccceeeeeeccCChHHHHHHHHHHHHHhcc---CC
Q 036440 69 QSIPPVCMIPLRLGYSHIKIMIAFFIRLVVGRGRLHIFSWLNFMKRVINMQIIIHVFGDEESVKILKICREAITS---KA 145 (181)
Q Consensus 69 ~~~P~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~iLHdw~D~~~~~iL~~~~~a~~~---~g 145 (181)
+++|.+|+| +++++||+|+|++|.++|++++++|+| ||
T Consensus 247 ~~~~~~D~v---------------------------------------~~~~vlh~~~d~~~~~~l~~~~~~L~p~~~gG 287 (358)
T 1zg3_A 247 KSIPSADAV---------------------------------------LLKWVLHDWNDEQSLKILKNSKEAISHKGKDG 287 (358)
T ss_dssp TCCCCCSEE---------------------------------------EEESCGGGSCHHHHHHHHHHHHHHTGGGGGGC
T ss_pred CCCCCceEE---------------------------------------EEcccccCCCHHHHHHHHHHHHHhCCCCCCCc
Confidence 988889999 999999999999999999999999999 88
Q ss_pred -----------------------------------ccCCHHHHHHHHHhCCCeEEEEEEcCCCCeEEEEEC
Q 036440 146 -----------------------------------KLSTEKELESLFVEVHFHHYKITPLFGLPSLIEVYP 181 (181)
Q Consensus 146 -----------------------------------~eRt~~E~~~Ll~~aGf~~~~i~~~~~~~~viE~~~ 181 (181)
++||.+||+++|+++||+.+++++.++..++||++|
T Consensus 288 ~l~i~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~g~~~t~~e~~~ll~~aGf~~~~~~~~~~~~~vie~~~ 358 (358)
T 1zg3_A 288 KVIIIDISIDETSDDRGLTELQLDYDLVMLTMFLGKERTKQEWEKLIYDAGFSSYKITPISGFKSLIEVYP 358 (358)
T ss_dssp EEEEEECEECTTCSCHHHHHHHHHHHHHHHHHHSCCCEEHHHHHHHHHHTTCCEEEEEEETTTEEEEEEEC
T ss_pred EEEEEEeccCCCCccchhhhHHHhhCHHHhccCCCCCCCHHHHHHHHHHcCCCeeEEEecCCCcEEEEEeC
Confidence 357999999999999999999999988889999997
|
| >3i53_A O-methyltransferase; CO-complex, rossmann-like fold; HET: SAH; 2.08A {Streptomyces carzinostaticus subsp} PDB: 3i58_A* 3i5u_A* 3i64_A* | Back alignment and structure |
|---|
Probab=99.89 E-value=4.3e-23 Score=175.12 Aligned_cols=138 Identities=21% Similarity=0.262 Sum_probs=124.0
Q ss_pred ChHHHhhccccchhHHHHHHhhhhhcCCCeEEEec------------CCCCceEEEeechhhhhhhcc-------CCCce
Q 036440 1 FNQAVASDTQTVTASLALKYCKQIFERLGSLVDVG------------AFPCVKCTEFDQPHVVANLLD-------TNNLK 61 (181)
Q Consensus 1 F~~aM~~~s~~~~~~~~l~~~~~d~~~~~~lvDvG------------~~P~l~~~~~DlP~Vv~~a~~-------~~ri~ 61 (181)
|+++|.+.+.... +.+++.+ +|++..+||||| ++|+++++++|+|++++.+.. .+||+
T Consensus 146 f~~~m~~~~~~~~-~~~~~~~--~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~~~~~~~~~v~ 222 (332)
T 3i53_A 146 FDTLMSHHLELDY-TGIAAKY--DWAALGHVVDVGGGSGGLLSALLTAHEDLSGTVLDLQGPASAAHRRFLDTGLSGRAQ 222 (332)
T ss_dssp HHHHHHHHHHHHH-TTGGGSS--CCGGGSEEEEETCTTSHHHHHHHHHCTTCEEEEEECHHHHHHHHHHHHHTTCTTTEE
T ss_pred HHHHHHHhHHhhH-HHHHHhC--CCCCCCEEEEeCCChhHHHHHHHHHCCCCeEEEecCHHHHHHHHHhhhhcCcCcCeE
Confidence 5677777666555 6777888 788889999999 899999999999999987752 58999
Q ss_pred EEecCCCCCCC-CcceEeccccchhhhHHhhhhhhhhcCCCccchhhhhhcccccceeeeeeccCChHHHHHHHHHHHHH
Q 036440 62 YLADDFFQSIP-PVCMIPLRLGYSHIKIMIAFFIRLVVGRGRLHIFSWLNFMKRVINMQIIIHVFGDEESVKILKICREA 140 (181)
Q Consensus 62 ~~~gDff~~~P-~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~iLHdw~D~~~~~iL~~~~~a 140 (181)
++.+|+++++| ..|+| +++++||+|+|+++.++|++++.+
T Consensus 223 ~~~~d~~~~~p~~~D~v---------------------------------------~~~~vlh~~~~~~~~~~l~~~~~~ 263 (332)
T 3i53_A 223 VVVGSFFDPLPAGAGGY---------------------------------------VLSAVLHDWDDLSAVAILRRCAEA 263 (332)
T ss_dssp EEECCTTSCCCCSCSEE---------------------------------------EEESCGGGSCHHHHHHHHHHHHHH
T ss_pred EecCCCCCCCCCCCcEE---------------------------------------EEehhhccCCHHHHHHHHHHHHHh
Confidence 99999998898 58999 999999999999999999999999
Q ss_pred hccCC----------------------------ccCCHHHHHHHHHhCCCeEEEEEEcCCCCeEEEEEC
Q 036440 141 ITSKA----------------------------KLSTEKELESLFVEVHFHHYKITPLFGLPSLIEVYP 181 (181)
Q Consensus 141 ~~~~g----------------------------~eRt~~E~~~Ll~~aGf~~~~i~~~~~~~~viE~~~ 181 (181)
|+||| ++||.+||+++|++|||+++++++.++ .++||+++
T Consensus 264 L~pgG~l~i~e~~~~~~~~~~~~d~~~~~~~~~~~~t~~e~~~ll~~aGf~~~~~~~~~~-~~vie~r~ 331 (332)
T 3i53_A 264 AGSGGVVLVIEAVAGDEHAGTGMDLRMLTYFGGKERSLAELGELAAQAGLAVRAAHPISY-VSIVEMTA 331 (332)
T ss_dssp HTTTCEEEEEECCCC---CCHHHHHHHHHHHSCCCCCHHHHHHHHHHTTEEEEEEEECSS-SEEEEEEE
T ss_pred cCCCCEEEEEeecCCCCCccHHHHHHHHhhCCCCCCCHHHHHHHHHHCCCEEEEEEECCC-cEEEEEee
Confidence 99999 579999999999999999999999998 99999975
|
| >1fp2_A Isoflavone O-methyltransferase; protein-product complex; HET: SAH HMO; 1.40A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpx_A* 2qyo_A* | Back alignment and structure |
|---|
Probab=99.88 E-value=2.6e-22 Score=172.28 Aligned_cols=140 Identities=46% Similarity=0.854 Sum_probs=125.5
Q ss_pred ChHHHhhccccchhHHHHHHhhhhhcCCCeEEEec------------CCCCceEEEeechhhhhhhccCCCceEEecCCC
Q 036440 1 FNQAVASDTQTVTASLALKYCKQIFERLGSLVDVG------------AFPCVKCTEFDQPHVVANLLDTNNLKYLADDFF 68 (181)
Q Consensus 1 F~~aM~~~s~~~~~~~~l~~~~~d~~~~~~lvDvG------------~~P~l~~~~~DlP~Vv~~a~~~~ri~~~~gDff 68 (181)
|+++|+..+.... +. ++.|+++|++..+||||| +||+++++++|+|++++.+...++++++.+|++
T Consensus 164 f~~~m~~~~~~~~-~~-~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~~v~~~~~d~~ 241 (352)
T 1fp2_A 164 FNDAMASDSKLIN-LA-LRDCDFVFDGLESIVDVGGGTGTTAKIICETFPKLKCIVFDRPQVVENLSGSNNLTYVGGDMF 241 (352)
T ss_dssp HHHHHHHTHHHHH-HH-HHTCHHHHTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEECHHHHTTCCCBTTEEEEECCTT
T ss_pred HHHHHHhcchhhh-hH-HHhcccccccCceEEEeCCCccHHHHHHHHHCCCCeEEEeeCHHHHhhcccCCCcEEEecccc
Confidence 5678887777665 55 777754788999999999 789999999999999998877677999999999
Q ss_pred CCCCCcceEeccccchhhhHHhhhhhhhhcCCCccchhhhhhcccccceeeeeeccCChHHHHHHHHHHHHHhcc---CC
Q 036440 69 QSIPPVCMIPLRLGYSHIKIMIAFFIRLVVGRGRLHIFSWLNFMKRVINMQIIIHVFGDEESVKILKICREAITS---KA 145 (181)
Q Consensus 69 ~~~P~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~iLHdw~D~~~~~iL~~~~~a~~~---~g 145 (181)
+++|..|+| +++++||+|+|+++.++|++++.+|+| ||
T Consensus 242 ~~~p~~D~v---------------------------------------~~~~~lh~~~d~~~~~~l~~~~~~L~p~~~gG 282 (352)
T 1fp2_A 242 TSIPNADAV---------------------------------------LLKYILHNWTDKDCLRILKKCKEAVTNDGKRG 282 (352)
T ss_dssp TCCCCCSEE---------------------------------------EEESCGGGSCHHHHHHHHHHHHHHHSGGGCCC
T ss_pred CCCCCccEE---------------------------------------EeehhhccCCHHHHHHHHHHHHHhCCCCCCCc
Confidence 988889999 999999999999999999999999999 88
Q ss_pred ----------------------------------ccCCHHHHHHHHHhCCCeEEEEEEcCCCCeEEEEEC
Q 036440 146 ----------------------------------KLSTEKELESLFVEVHFHHYKITPLFGLPSLIEVYP 181 (181)
Q Consensus 146 ----------------------------------~eRt~~E~~~Ll~~aGf~~~~i~~~~~~~~viE~~~ 181 (181)
++||.+||+++|+++||+.+++++.++..++||++|
T Consensus 283 ~l~i~e~~~~~~~~~~~~~~~~~~~d~~~~~~~g~~~t~~e~~~ll~~aGf~~~~~~~~~~~~~vie~~~ 352 (352)
T 1fp2_A 283 KVTIIDMVIDKKKDENQVTQIKLLMDVNMACLNGKERNEEEWKKLFIEAGFQHYKISPLTGFLSLIEIYP 352 (352)
T ss_dssp EEEEEECEECTTTSCHHHHHHHHHHHHHGGGGTCCCEEHHHHHHHHHHTTCCEEEEEEEETTEEEEEEEC
T ss_pred EEEEEEeecCCCCCccchhhhHhhccHHHHhccCCCCCHHHHHHHHHHCCCCeeEEEecCCCcEEEEEeC
Confidence 137889999999999999999999888889999997
|
| >2ip2_A Probable phenazine-specific methyltransferase; pyocyanin, phenazine-1-carboxy PHZM; 1.80A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=99.87 E-value=1.3e-21 Score=165.50 Aligned_cols=137 Identities=22% Similarity=0.269 Sum_probs=123.8
Q ss_pred ChHHHhhccccchhHHHHHHhhhhhcCCCeEEEec------------CCCCceEEEeechhhhhhhcc-------CCCce
Q 036440 1 FNQAVASDTQTVTASLALKYCKQIFERLGSLVDVG------------AFPCVKCTEFDQPHVVANLLD-------TNNLK 61 (181)
Q Consensus 1 F~~aM~~~s~~~~~~~~l~~~~~d~~~~~~lvDvG------------~~P~l~~~~~DlP~Vv~~a~~-------~~ri~ 61 (181)
|+++| +.+.... +.+++.+ +|++ .+|+||| ++|+.+++++|+|++++.+.. .+|++
T Consensus 146 f~~~m-~~~~~~~-~~~~~~~--~~~~-~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~~~~~~~~~v~ 220 (334)
T 2ip2_A 146 FLLAM-KASNLAF-HEIPRLL--DFRG-RSFVDVGGGSGELTKAILQAEPSARGVMLDREGSLGVARDNLSSLLAGERVS 220 (334)
T ss_dssp HHHHH-GGGHHHH-HHHHHHS--CCTT-CEEEEETCTTCHHHHHHHHHCTTCEEEEEECTTCTHHHHHHTHHHHHTTSEE
T ss_pred HHHHH-HHHHHHH-HHHHHhC--CCCC-CEEEEeCCCchHHHHHHHHHCCCCEEEEeCcHHHHHHHHHHHhhcCCCCcEE
Confidence 56788 7776666 7888999 7888 9999999 789999999999998887653 57999
Q ss_pred EEecCCCCCCCC-cceEeccccchhhhHHhhhhhhhhcCCCccchhhhhhcccccceeeeeeccCChHHHHHHHHHHHHH
Q 036440 62 YLADDFFQSIPP-VCMIPLRLGYSHIKIMIAFFIRLVVGRGRLHIFSWLNFMKRVINMQIIIHVFGDEESVKILKICREA 140 (181)
Q Consensus 62 ~~~gDff~~~P~-~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~iLHdw~D~~~~~iL~~~~~a 140 (181)
++.+|+++++|. .|+| +++++||+|+|+++.++|++++.+
T Consensus 221 ~~~~d~~~~~~~~~D~v---------------------------------------~~~~vl~~~~~~~~~~~l~~~~~~ 261 (334)
T 2ip2_A 221 LVGGDMLQEVPSNGDIY---------------------------------------LLSRIIGDLDEAASLRLLGNCREA 261 (334)
T ss_dssp EEESCTTTCCCSSCSEE---------------------------------------EEESCGGGCCHHHHHHHHHHHHHH
T ss_pred EecCCCCCCCCCCCCEE---------------------------------------EEchhccCCCHHHHHHHHHHHHHh
Confidence 999999998886 7999 999999999999999999999999
Q ss_pred hccCC-------------------------------ccCCHHHHHHHHHhCCCeEEEEEEcCCCCeEEEEEC
Q 036440 141 ITSKA-------------------------------KLSTEKELESLFVEVHFHHYKITPLFGLPSLIEVYP 181 (181)
Q Consensus 141 ~~~~g-------------------------------~eRt~~E~~~Ll~~aGf~~~~i~~~~~~~~viE~~~ 181 (181)
++||| ++||.+||+++|+++||+++++++.++..++||++|
T Consensus 262 L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~aGf~~~~~~~~~~~~~~i~~~~ 333 (334)
T 2ip2_A 262 MAGDGRVVVIERTISASEPSPMSVLWDVHLFMACAGRHRTTEEVVDLLGRGGFAVERIVDLPMETRMIVAAR 333 (334)
T ss_dssp SCTTCEEEEEECCBCSSSCCHHHHHHHHHHHHHHSCCCCBHHHHHHHHHHTTEEEEEEEEETTTEEEEEEEE
T ss_pred cCCCCEEEEEEeccCCCCCcchhHHhhhHhHhhCCCcCCCHHHHHHHHHHCCCceeEEEECCCCCEEEEEEe
Confidence 99999 578999999999999999999999988889999986
|
| >1fp1_D Isoliquiritigenin 2'-O-methyltransferase; protein-substrate, protein-product complex; HET: SAH HCC; 1.82A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpq_A* | Back alignment and structure |
|---|
Probab=99.86 E-value=1.2e-21 Score=169.62 Aligned_cols=140 Identities=26% Similarity=0.477 Sum_probs=124.8
Q ss_pred ChHHHhhccccchhHHHHHHhhhhhcCCCeEEEec------------CCCCceEEEeechhhhhhhccCCCceEEecCCC
Q 036440 1 FNQAVASDTQTVTASLALKYCKQIFERLGSLVDVG------------AFPCVKCTEFDQPHVVANLLDTNNLKYLADDFF 68 (181)
Q Consensus 1 F~~aM~~~s~~~~~~~~l~~~~~d~~~~~~lvDvG------------~~P~l~~~~~DlP~Vv~~a~~~~ri~~~~gDff 68 (181)
|+++|...+.... +.+++.|+ +|++..+||||| ++|+++++++|+|++++.+...++++++.+|++
T Consensus 185 f~~~m~~~~~~~~-~~l~~~~~-~~~~~~~vLDvG~G~G~~~~~l~~~~~~~~~~~~D~~~~~~~a~~~~~v~~~~~d~~ 262 (372)
T 1fp1_D 185 FNKSMVDVCATEM-KRMLEIYT-GFEGISTLVDVGGGSGRNLELIISKYPLIKGINFDLPQVIENAPPLSGIEHVGGDMF 262 (372)
T ss_dssp HHHHHHHHHHHHH-HHHHHHCC-TTTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEECHHHHTTCCCCTTEEEEECCTT
T ss_pred HHHHHHhhhHHHH-HHHHHHhh-ccCCCCEEEEeCCCCcHHHHHHHHHCCCCeEEEeChHHHHHhhhhcCCCEEEeCCcc
Confidence 5778887777666 78889983 488889999999 799999999999999998887778999999999
Q ss_pred CCCCCcceEeccccchhhhHHhhhhhhhhcCCCccchhhhhhcccccceeeeeeccCChHHHHHHHHHHHHHhccCC---
Q 036440 69 QSIPPVCMIPLRLGYSHIKIMIAFFIRLVVGRGRLHIFSWLNFMKRVINMQIIIHVFGDEESVKILKICREAITSKA--- 145 (181)
Q Consensus 69 ~~~P~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~iLHdw~D~~~~~iL~~~~~a~~~~g--- 145 (181)
+++|..|+| ++.++||+|+|+++.++|++++.+|+|||
T Consensus 263 ~~~~~~D~v---------------------------------------~~~~~lh~~~d~~~~~~l~~~~~~L~pgG~l~ 303 (372)
T 1fp1_D 263 ASVPQGDAM---------------------------------------ILKAVCHNWSDEKCIEFLSNCHKALSPNGKVI 303 (372)
T ss_dssp TCCCCEEEE---------------------------------------EEESSGGGSCHHHHHHHHHHHHHHEEEEEEEE
T ss_pred cCCCCCCEE---------------------------------------EEecccccCCHHHHHHHHHHHHHhcCCCCEEE
Confidence 988889999 99999999999999999999999999888
Q ss_pred --------------------------------ccCCHHHHHHHHHhCCCeEEEEEE-cCCCCeEEEEEC
Q 036440 146 --------------------------------KLSTEKELESLFVEVHFHHYKITP-LFGLPSLIEVYP 181 (181)
Q Consensus 146 --------------------------------~eRt~~E~~~Ll~~aGf~~~~i~~-~~~~~~viE~~~ 181 (181)
++||.+||+++|+++||+.+++++ .++..++||++|
T Consensus 304 i~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~t~~e~~~ll~~aGf~~~~~~~~~~~~~~vie~~~ 372 (372)
T 1fp1_D 304 IVEFILPEEPNTSEESKLVSTLDNLMFITVGGRERTEKQYEKLSKLSGFSKFQVACRAFNSLGVMEFYK 372 (372)
T ss_dssp EEEEEECSSCCSSHHHHHHHHHHHHHHHHHSCCCEEHHHHHHHHHHTTCSEEEEEEEETTTEEEEEEEC
T ss_pred EEEeccCCCCccchHHHHHHHhhHHHHhccCCccCCHHHHHHHHHHCCCceEEEEEcCCCCeEEEEEeC
Confidence 457899999999999999999998 455249999997
|
| >3dp7_A SAM-dependent methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research; 2.33A {Bacteroides vulgatus} | Back alignment and structure |
|---|
Probab=99.84 E-value=1.1e-20 Score=163.48 Aligned_cols=126 Identities=18% Similarity=0.261 Sum_probs=110.7
Q ss_pred HHHHHHhhhhhcCCCeEEEec------------CCCCceEEEeechhhhhhhcc-------CCCceEEecCCCCC---CC
Q 036440 15 SLALKYCKQIFERLGSLVDVG------------AFPCVKCTEFDQPHVVANLLD-------TNNLKYLADDFFQS---IP 72 (181)
Q Consensus 15 ~~~l~~~~~d~~~~~~lvDvG------------~~P~l~~~~~DlP~Vv~~a~~-------~~ri~~~~gDff~~---~P 72 (181)
..+++.+ ..++..+||||| +||+++++++|+|++++.+.. .+||+++.+|+++. +|
T Consensus 169 ~~~l~~~--~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~p 246 (363)
T 3dp7_A 169 GKALEIV--FSHHPKRLLDIGGNTGKWATQCVQYNKEVEVTIVDLPQQLEMMRKQTAGLSGSERIHGHGANLLDRDVPFP 246 (363)
T ss_dssp HHHHHHH--GGGCCSEEEEESCTTCHHHHHHHHHSTTCEEEEEECHHHHHHHHHHHTTCTTGGGEEEEECCCCSSSCCCC
T ss_pred HHHHHHh--cccCCCEEEEeCCCcCHHHHHHHHhCCCCEEEEEeCHHHHHHHHHHHHhcCcccceEEEEccccccCCCCC
Confidence 3556665 346789999999 889999999999999987753 36999999999984 67
Q ss_pred C-cceEeccccchhhhHHhhhhhhhhcCCCccchhhhhhcccccceeeeeeccCChHHHHHHHHHHHHHhccCC------
Q 036440 73 P-VCMIPLRLGYSHIKIMIAFFIRLVVGRGRLHIFSWLNFMKRVINMQIIIHVFGDEESVKILKICREAITSKA------ 145 (181)
Q Consensus 73 ~-~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~iLHdw~D~~~~~iL~~~~~a~~~~g------ 145 (181)
. .|+| +++++||+|+|+++.++|++++.+|+|||
T Consensus 247 ~~~D~v---------------------------------------~~~~vlh~~~~~~~~~~l~~~~~~L~pgG~l~i~e 287 (363)
T 3dp7_A 247 TGFDAV---------------------------------------WMSQFLDCFSEEEVISILTRVAQSIGKDSKVYIME 287 (363)
T ss_dssp CCCSEE---------------------------------------EEESCSTTSCHHHHHHHHHHHHHHCCTTCEEEEEE
T ss_pred CCcCEE---------------------------------------EEechhhhCCHHHHHHHHHHHHHhcCCCcEEEEEe
Confidence 4 7999 99999999999999999999999999999
Q ss_pred ------------------------------ccCCHHHHHHHHHhCCCeEEEEEEcCCC-CeEEEEEC
Q 036440 146 ------------------------------KLSTEKELESLFVEVHFHHYKITPLFGL-PSLIEVYP 181 (181)
Q Consensus 146 ------------------------------~eRt~~E~~~Ll~~aGf~~~~i~~~~~~-~~viE~~~ 181 (181)
++||.+||+++|++|||+++++++..+. .++||++|
T Consensus 288 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~AGf~~v~~~~~~g~~~svi~~~~ 354 (363)
T 3dp7_A 288 TLWDRQRYETASYCLTQISLYFTAMANGNSKMFHSDDLIRCIENAGLEVEEIQDNIGLGHSILQCRL 354 (363)
T ss_dssp CCTTSCSSHHHHHHHHHHHHHHHHSSCSSCCSCCHHHHHHHHHTTTEEESCCCCCBTTTBEEEEEEE
T ss_pred eccCCccccchhhHHHHhhhhHHhhhCCCCcccCHHHHHHHHHHcCCeEEEEEeCCCCCceEEEEee
Confidence 4789999999999999999999977654 89999975
|
| >1x19_A CRTF-related protein; methyltransferase, bacteriochllochlorophyll, BCHU, SAM, SAH, adenosylmethyonine, S-adenosylhomocysteine, ADO-Met; 2.27A {Chlorobium tepidum} PDB: 1x1a_A* 1x1b_A* 1x1c_A* 1x1d_A* | Back alignment and structure |
|---|
Probab=99.80 E-value=5.4e-19 Score=151.66 Aligned_cols=138 Identities=14% Similarity=0.229 Sum_probs=122.2
Q ss_pred ChHHHhhccc-cchhHHHHHHhhhhhcCCCeEEEec------------CCCCceEEEeechhhhhhhc-------cCCCc
Q 036440 1 FNQAVASDTQ-TVTASLALKYCKQIFERLGSLVDVG------------AFPCVKCTEFDQPHVVANLL-------DTNNL 60 (181)
Q Consensus 1 F~~aM~~~s~-~~~~~~~l~~~~~d~~~~~~lvDvG------------~~P~l~~~~~DlP~Vv~~a~-------~~~ri 60 (181)
|+++|+..+. ... +.+++.+ +++...+||||| ++|+++++++|+|.+++.+. ..+|+
T Consensus 166 f~~~m~~~~~~~~~-~~l~~~~--~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~~~~~~~~~v 242 (359)
T 1x19_A 166 YFEEIHRSNAKFAI-QLLLEEA--KLDGVKKMIDVGGGIGDISAAMLKHFPELDSTILNLPGAIDLVNENAAEKGVADRM 242 (359)
T ss_dssp HHHHHHHTTCHHHH-HHHHHHC--CCTTCCEEEEESCTTCHHHHHHHHHCTTCEEEEEECGGGHHHHHHHHHHTTCTTTE
T ss_pred HHHHHHHhccchhH-HHHHHhc--CCCCCCEEEEECCcccHHHHHHHHHCCCCeEEEEecHHHHHHHHHHHHhcCCCCCE
Confidence 5778888877 655 7889999 788899999999 79999999999999988775 35689
Q ss_pred eEEecCCCC-CCCCcceEeccccchhhhHHhhhhhhhhcCCCccchhhhhhcccccceeeeeeccCChHHHHHHHHHHHH
Q 036440 61 KYLADDFFQ-SIPPVCMIPLRLGYSHIKIMIAFFIRLVVGRGRLHIFSWLNFMKRVINMQIIIHVFGDEESVKILKICRE 139 (181)
Q Consensus 61 ~~~~gDff~-~~P~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~iLHdw~D~~~~~iL~~~~~ 139 (181)
+++.+|+++ ++|..|+| ++.++||+|+|+++.++|++++.
T Consensus 243 ~~~~~d~~~~~~~~~D~v---------------------------------------~~~~vlh~~~d~~~~~~l~~~~~ 283 (359)
T 1x19_A 243 RGIAVDIYKESYPEADAV---------------------------------------LFCRILYSANEQLSTIMCKKAFD 283 (359)
T ss_dssp EEEECCTTTSCCCCCSEE---------------------------------------EEESCGGGSCHHHHHHHHHHHHT
T ss_pred EEEeCccccCCCCCCCEE---------------------------------------EEechhccCCHHHHHHHHHHHHH
Confidence 999999997 46667999 99999999999999999999999
Q ss_pred HhccCC------------------------------cc----CCHHHHHHHHHhCCCeEEEEEEcCCCCeEEEEEC
Q 036440 140 AITSKA------------------------------KL----STEKELESLFVEVHFHHYKITPLFGLPSLIEVYP 181 (181)
Q Consensus 140 a~~~~g------------------------------~e----Rt~~E~~~Ll~~aGf~~~~i~~~~~~~~viE~~~ 181 (181)
+++||| ++ +|.+||+++|+++||+.+++.+.+ ..++||++|
T Consensus 284 ~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~t~~e~~~ll~~aGf~~v~~~~~~-~~~vi~a~k 358 (359)
T 1x19_A 284 AMRSGGRLLILDMVIDDPENPNFDYLSHYILGAGMPFSVLGFKEQARYKEILESLGYKDVTMVRKY-DHLLVQAVK 358 (359)
T ss_dssp TCCTTCEEEEEEECCCCTTSCCHHHHHHHGGGGGSSCCCCCCCCGGGHHHHHHHHTCEEEEEEEET-TEEEEEEEC
T ss_pred hcCCCCEEEEEecccCCCCCchHHHHHHHHHhcCCCCcccCCCCHHHHHHHHHHCCCceEEEEecC-CceEEEEeC
Confidence 999998 12 899999999999999999999887 679999986
|
| >3mcz_A O-methyltransferase; adomet_mtases, S-adenosylmethionine-dependent methyltransfer structural genomics, PSI-2; HET: MSE; 1.90A {Burkholderia thailandensis} | Back alignment and structure |
|---|
Probab=99.79 E-value=4.6e-19 Score=150.84 Aligned_cols=136 Identities=10% Similarity=0.138 Sum_probs=114.2
Q ss_pred ChHHHhhccccchhHHHHHHhhhhhcC-CCeEEEec------------CCCCceEEEeechhhhhhhcc-------CCCc
Q 036440 1 FNQAVASDTQTVTASLALKYCKQIFER-LGSLVDVG------------AFPCVKCTEFDQPHVVANLLD-------TNNL 60 (181)
Q Consensus 1 F~~aM~~~s~~~~~~~~l~~~~~d~~~-~~~lvDvG------------~~P~l~~~~~DlP~Vv~~a~~-------~~ri 60 (181)
|+++|.+.... . ..+++.+ ++++ ..+||||| ++|+++++++|+|++++.+.. .+|+
T Consensus 156 f~~~m~~~~~~-~-~~~l~~~--~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~~~~~~~~~v 231 (352)
T 3mcz_A 156 FNDAMVRLSQP-M-VDVVSEL--GVFARARTVIDLAGGHGTYLAQVLRRHPQLTGQIWDLPTTRDAARKTIHAHDLGGRV 231 (352)
T ss_dssp HHHHHHHHHHH-H-HHHHHTC--GGGTTCCEEEEETCTTCHHHHHHHHHCTTCEEEEEECGGGHHHHHHHHHHTTCGGGE
T ss_pred HHHHHHhhhhh-H-HHHHHhC--CCcCCCCEEEEeCCCcCHHHHHHHHhCCCCeEEEEECHHHHHHHHHHHHhcCCCCce
Confidence 56778763222 1 3688888 7887 89999999 899999999999998876642 4689
Q ss_pred eEEecCCCCC---CCC-cceEeccccchhhhHHhhhhhhhhcCCCccchhhhhhcccccceeeeeeccCChHHHHHHHHH
Q 036440 61 KYLADDFFQS---IPP-VCMIPLRLGYSHIKIMIAFFIRLVVGRGRLHIFSWLNFMKRVINMQIIIHVFGDEESVKILKI 136 (181)
Q Consensus 61 ~~~~gDff~~---~P~-~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~iLHdw~D~~~~~iL~~ 136 (181)
+++.+|+++. .|. .|+| +++++||+|+|+++.++|++
T Consensus 232 ~~~~~d~~~~~~~~~~~~D~v---------------------------------------~~~~vlh~~~~~~~~~~l~~ 272 (352)
T 3mcz_A 232 EFFEKNLLDARNFEGGAADVV---------------------------------------MLNDCLHYFDAREAREVIGH 272 (352)
T ss_dssp EEEECCTTCGGGGTTCCEEEE---------------------------------------EEESCGGGSCHHHHHHHHHH
T ss_pred EEEeCCcccCcccCCCCccEE---------------------------------------EEecccccCCHHHHHHHHHH
Confidence 9999999976 454 7999 99999999999999999999
Q ss_pred HHHHhccCC---------------------------------ccCCHHHHHHHHHhCCCeEEEEEEcCCCCeEEEEEC
Q 036440 137 CREAITSKA---------------------------------KLSTEKELESLFVEVHFHHYKITPLFGLPSLIEVYP 181 (181)
Q Consensus 137 ~~~a~~~~g---------------------------------~eRt~~E~~~Ll~~aGf~~~~i~~~~~~~~viE~~~ 181 (181)
++.+|+||| ++||.+||+++|++|||++++.. .+..+++.+++
T Consensus 273 ~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~aGf~~~~~~--~g~~~l~~a~k 348 (352)
T 3mcz_A 273 AAGLVKPGGALLILTMTMNDDRVTPALSADFSLHMMVNTNHGELHPTPWIAGVVRDAGLAVGERS--IGRYTLLIGQR 348 (352)
T ss_dssp HHHTEEEEEEEEEEEECCCTTSSSSHHHHHHHHHHHHHSTTCCCCCHHHHHHHHHHTTCEEEEEE--ETTEEEEEEEC
T ss_pred HHHHcCCCCEEEEEEeccCCCCCCCchHHHhhHHHHhhCCCCCcCCHHHHHHHHHHCCCceeeec--cCceEEEEEec
Confidence 999999988 68999999999999999999843 35577887764
|
| >1tw3_A COMT, carminomycin 4-O-methyltransferase; anthracycline, methylate, tailoring enzyme, polyketide, S-adenosyl-L-homocystein; HET: SAH ERT; 2.35A {Streptomyces peucetius} SCOP: a.4.5.29 c.66.1.12 PDB: 1tw2_A* | Back alignment and structure |
|---|
Probab=99.79 E-value=6.6e-19 Score=150.25 Aligned_cols=139 Identities=21% Similarity=0.350 Sum_probs=122.3
Q ss_pred ChHHHhhccccchhHHHHHHhhhhhcCCCeEEEec------------CCCCceEEEeechhhhhhhcc-------CCCce
Q 036440 1 FNQAVASDTQTVTASLALKYCKQIFERLGSLVDVG------------AFPCVKCTEFDQPHVVANLLD-------TNNLK 61 (181)
Q Consensus 1 F~~aM~~~s~~~~~~~~l~~~~~d~~~~~~lvDvG------------~~P~l~~~~~DlP~Vv~~a~~-------~~ri~ 61 (181)
|+++|...+.... +.+++.+ +++...+||||| ++|+++++.+|+|.+++.+.. .+|++
T Consensus 160 f~~~~~~~~~~~~-~~l~~~~--~~~~~~~vLDvG~G~G~~~~~l~~~~~~~~~~~~D~~~~~~~a~~~~~~~~~~~~v~ 236 (360)
T 1tw3_A 160 FDSLLACDQDVAF-DAPAAAY--DWTNVRHVLDVGGGKGGFAAAIARRAPHVSATVLEMAGTVDTARSYLKDEGLSDRVD 236 (360)
T ss_dssp HHHHHTTTTTTTT-HHHHHHS--CCTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEECTTHHHHHHHHHHHTTCTTTEE
T ss_pred HHHHHHHHHHHhH-HHHHHhC--CCccCcEEEEeCCcCcHHHHHHHHhCCCCEEEEecCHHHHHHHHHHHHhcCCCCceE
Confidence 5677887777666 7889999 788889999999 789999999999988886642 45999
Q ss_pred EEecCCCCCCCC-cceEeccccchhhhHHhhhhhhhhcCCCccchhhhhhcccccceeeeeeccCChHHHHHHHHHHHHH
Q 036440 62 YLADDFFQSIPP-VCMIPLRLGYSHIKIMIAFFIRLVVGRGRLHIFSWLNFMKRVINMQIIIHVFGDEESVKILKICREA 140 (181)
Q Consensus 62 ~~~gDff~~~P~-~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~iLHdw~D~~~~~iL~~~~~a 140 (181)
++.+|+++++|. .|+| ++.++||+|+|+++.++|++++.+
T Consensus 237 ~~~~d~~~~~~~~~D~v---------------------------------------~~~~vl~~~~~~~~~~~l~~~~~~ 277 (360)
T 1tw3_A 237 VVEGDFFEPLPRKADAI---------------------------------------ILSFVLLNWPDHDAVRILTRCAEA 277 (360)
T ss_dssp EEECCTTSCCSSCEEEE---------------------------------------EEESCGGGSCHHHHHHHHHHHHHT
T ss_pred EEeCCCCCCCCCCccEE---------------------------------------EEcccccCCCHHHHHHHHHHHHHh
Confidence 999999998887 7998 999999999999999999999999
Q ss_pred hccCC--------------------------------ccCCHHHHHHHHHhCCCeEEEEEEcCCC-----CeEEEEEC
Q 036440 141 ITSKA--------------------------------KLSTEKELESLFVEVHFHHYKITPLFGL-----PSLIEVYP 181 (181)
Q Consensus 141 ~~~~g--------------------------------~eRt~~E~~~Ll~~aGf~~~~i~~~~~~-----~~viE~~~ 181 (181)
++||| +++|.+||+++|+++||+++++.+.++. .++||++|
T Consensus 278 L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~aGf~~~~~~~~~~~~~~~~~~~i~~~~ 355 (360)
T 1tw3_A 278 LEPGGRILIHERDDLHENSFNEQFTELDLRMLVFLGGALRTREKWDGLAASAGLVVEEVRQLPSPTIPYDLSLLVLAP 355 (360)
T ss_dssp EEEEEEEEEEECCBCGGGCCSHHHHHHHHHHHHHHSCCCCBHHHHHHHHHHTTEEEEEEEEEECSSSSCEEEEEEEEE
T ss_pred cCCCcEEEEEEEeccCCCCCcchhhhccHHHhhhcCCcCCCHHHHHHHHHHCCCeEEEEEeCCCCcccCccEEEEEEe
Confidence 99888 3478999999999999999999988765 78999975
|
| >1qzz_A RDMB, aclacinomycin-10-hydroxylase; anthracycline, methyltransferase, polyketide, tailoring enzymes, structural proteomics in E spine; HET: SAM; 2.10A {Streptomyces purpurascens} SCOP: a.4.5.29 c.66.1.12 PDB: 1r00_A* 1xds_A* 1xdu_A* | Back alignment and structure |
|---|
Probab=99.78 E-value=1.5e-18 Score=148.42 Aligned_cols=139 Identities=16% Similarity=0.262 Sum_probs=121.6
Q ss_pred ChHHHhhccccchhHHHHHHhhhhhcCCCeEEEec------------CCCCceEEEeechhhhhhhcc-------CCCce
Q 036440 1 FNQAVASDTQTVTASLALKYCKQIFERLGSLVDVG------------AFPCVKCTEFDQPHVVANLLD-------TNNLK 61 (181)
Q Consensus 1 F~~aM~~~s~~~~~~~~l~~~~~d~~~~~~lvDvG------------~~P~l~~~~~DlP~Vv~~a~~-------~~ri~ 61 (181)
|+++|...+.... +.+++.+ +++...+||||| ++|+++++.+|+|.+++.+.. .+|++
T Consensus 159 f~~~~~~~~~~~~-~~~~~~~--~~~~~~~vlDvG~G~G~~~~~l~~~~~~~~~~~~D~~~~~~~a~~~~~~~~~~~~v~ 235 (374)
T 1qzz_A 159 FDALMSCDEDLAY-EAPADAY--DWSAVRHVLDVGGGNGGMLAAIALRAPHLRGTLVELAGPAERARRRFADAGLADRVT 235 (374)
T ss_dssp HHHTCGGGSTTTT-HHHHHTS--CCTTCCEEEEETCTTSHHHHHHHHHCTTCEEEEEECHHHHHHHHHHHHHTTCTTTEE
T ss_pred HHHHHHHhhHhHH-HHHHHhC--CCCCCCEEEEECCCcCHHHHHHHHHCCCCEEEEEeCHHHHHHHHHHHHhcCCCCceE
Confidence 4567777766666 7888888 788889999999 789999999999988887652 45999
Q ss_pred EEecCCCCCCCC-cceEeccccchhhhHHhhhhhhhhcCCCccchhhhhhcccccceeeeeeccCChHHHHHHHHHHHHH
Q 036440 62 YLADDFFQSIPP-VCMIPLRLGYSHIKIMIAFFIRLVVGRGRLHIFSWLNFMKRVINMQIIIHVFGDEESVKILKICREA 140 (181)
Q Consensus 62 ~~~gDff~~~P~-~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~iLHdw~D~~~~~iL~~~~~a 140 (181)
++.+|+++++|. .|+| ++++++|+|+|+++.++|++++.+
T Consensus 236 ~~~~d~~~~~~~~~D~v---------------------------------------~~~~vl~~~~~~~~~~~l~~~~~~ 276 (374)
T 1qzz_A 236 VAEGDFFKPLPVTADVV---------------------------------------LLSFVLLNWSDEDALTILRGCVRA 276 (374)
T ss_dssp EEECCTTSCCSCCEEEE---------------------------------------EEESCGGGSCHHHHHHHHHHHHHH
T ss_pred EEeCCCCCcCCCCCCEE---------------------------------------EEeccccCCCHHHHHHHHHHHHHh
Confidence 999999998887 7998 999999999999999999999999
Q ss_pred hccCC---------------------------------ccCCHHHHHHHHHhCCCeEEEEEEcCCCC-----eEEEEEC
Q 036440 141 ITSKA---------------------------------KLSTEKELESLFVEVHFHHYKITPLFGLP-----SLIEVYP 181 (181)
Q Consensus 141 ~~~~g---------------------------------~eRt~~E~~~Ll~~aGf~~~~i~~~~~~~-----~viE~~~ 181 (181)
++||| +++|.+||+++|+++||+++++.+.++.. ++||++|
T Consensus 277 L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~aGf~~~~~~~~~~~~~~~~~~~i~~~~ 355 (374)
T 1qzz_A 277 LEPGGRLLVLDRADVEGDGADRFFSTLLDLRMLTFMGGRVRTRDEVVDLAGSAGLALASERTSGSTTLPFDFSILEFTA 355 (374)
T ss_dssp EEEEEEEEEEECCH-------HHHHHHHHHHHHHHHSCCCCCHHHHHHHHHTTTEEEEEEEEECCSSCSSCEEEEEEEE
T ss_pred cCCCcEEEEEechhhcCCCCCcchhhhcchHHHHhCCCcCCCHHHHHHHHHHCCCceEEEEECCCCcccCCcEEEEEEE
Confidence 99888 23699999999999999999999988877 9999874
|
| >2r3s_A Uncharacterized protein; methyltransferase domain, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE; 2.15A {Nostoc punctiforme} | Back alignment and structure |
|---|
Probab=99.76 E-value=6.4e-18 Score=141.93 Aligned_cols=138 Identities=16% Similarity=0.182 Sum_probs=118.7
Q ss_pred ChHHHhhccccchhHHHHHHhhhhh--cCCCeEEEec------------CCCCceEEEeechhhhhhhcc-------CCC
Q 036440 1 FNQAVASDTQTVTASLALKYCKQIF--ERLGSLVDVG------------AFPCVKCTEFDQPHVVANLLD-------TNN 59 (181)
Q Consensus 1 F~~aM~~~s~~~~~~~~l~~~~~d~--~~~~~lvDvG------------~~P~l~~~~~DlP~Vv~~a~~-------~~r 59 (181)
|+++|...+.... ..+++.+ ++ +...+|+||| ++|+.+++.+|++.+++.+.. .+|
T Consensus 140 ~~~~~~~~~~~~~-~~~~~~~--~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~~~~~~~~~ 216 (335)
T 2r3s_A 140 FAKAMSPMMANPA-QLIAQLV--NENKIEPLKVLDISASHGLFGIAVAQHNPNAEIFGVDWASVLEVAKENARIQGVASR 216 (335)
T ss_dssp HHHHSGGGGHHHH-HHHHHHH--TC--CCCSEEEEETCTTCHHHHHHHHHCTTCEEEEEECHHHHHHHHHHHHHHTCGGG
T ss_pred HHHHHHHHHhhhH-HHHHHhc--ccccCCCCEEEEECCCcCHHHHHHHHHCCCCeEEEEecHHHHHHHHHHHHhcCCCcc
Confidence 4567776666555 7788888 67 8889999999 789999999999987776642 468
Q ss_pred ceEEecCCCC-CCCC-cceEeccccchhhhHHhhhhhhhhcCCCccchhhhhhcccccceeeeeeccCChHHHHHHHHHH
Q 036440 60 LKYLADDFFQ-SIPP-VCMIPLRLGYSHIKIMIAFFIRLVVGRGRLHIFSWLNFMKRVINMQIIIHVFGDEESVKILKIC 137 (181)
Q Consensus 60 i~~~~gDff~-~~P~-~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~iLHdw~D~~~~~iL~~~ 137 (181)
++++.+|+++ ++|. .|+| ++++++|+|+|+++.++|+++
T Consensus 217 v~~~~~d~~~~~~~~~~D~v---------------------------------------~~~~~l~~~~~~~~~~~l~~~ 257 (335)
T 2r3s_A 217 YHTIAGSAFEVDYGNDYDLV---------------------------------------LLPNFLHHFDVATCEQLLRKI 257 (335)
T ss_dssp EEEEESCTTTSCCCSCEEEE---------------------------------------EEESCGGGSCHHHHHHHHHHH
T ss_pred eEEEecccccCCCCCCCcEE---------------------------------------EEcchhccCCHHHHHHHHHHH
Confidence 9999999997 5665 7998 999999999999999999999
Q ss_pred HHHhccCC---------------------------------ccCCHHHHHHHHHhCCCeEEEEEEcCCCCeEEEEE
Q 036440 138 REAITSKA---------------------------------KLSTEKELESLFVEVHFHHYKITPLFGLPSLIEVY 180 (181)
Q Consensus 138 ~~a~~~~g---------------------------------~eRt~~E~~~Ll~~aGf~~~~i~~~~~~~~viE~~ 180 (181)
+.+++||| +++|.+||+++|+++||+.+++.+..+..++|+++
T Consensus 258 ~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~ll~~aGf~~~~~~~~~~~~~~i~~~ 333 (335)
T 2r3s_A 258 KTALAVEGKVIVFDFIPNSDRITPPDAAAFSLVMLATTPNGDAYTFAEYESMFSNAGFSHSQLHSLPTTQQQVIVA 333 (335)
T ss_dssp HHHEEEEEEEEEEECCCCTTSSCSHHHHHHHHHHHHHSSSCCCCCHHHHHHHHHHTTCSEEEEECCTTSSSEEEEE
T ss_pred HHhCCCCcEEEEEeecCCCCcCCchHHHHHHHHHHeeCCCCCcCCHHHHHHHHHHCCCCeeeEEECCCCceeEEEe
Confidence 99999888 56789999999999999999999998877877764
|
| >3dtn_A Putative methyltransferase MM_2633; structural genomics, unknown function, PSI-2, protein structure initiative; 2.09A {Methanosarcina mazei} | Back alignment and structure |
|---|
Probab=99.12 E-value=7.4e-10 Score=87.88 Aligned_cols=112 Identities=15% Similarity=0.206 Sum_probs=91.2
Q ss_pred CCCeEEEec------------CCCCceEEEeec-hhhhhhhcc----CCCceEEecCCCCC-CCC-cceEeccccchhhh
Q 036440 27 RLGSLVDVG------------AFPCVKCTEFDQ-PHVVANLLD----TNNLKYLADDFFQS-IPP-VCMIPLRLGYSHIK 87 (181)
Q Consensus 27 ~~~~lvDvG------------~~P~l~~~~~Dl-P~Vv~~a~~----~~ri~~~~gDff~~-~P~-~d~~~~~~~~~~~~ 87 (181)
.-.+|||+| ++|+.+.+.+|+ |..++.+.. .++++++.+|+.+. .+. .|++
T Consensus 44 ~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~~~~~fD~v---------- 113 (234)
T 3dtn_A 44 ENPDILDLGAGTGLLSAFLMEKYPEATFTLVDMSEKMLEIAKNRFRGNLKVKYIEADYSKYDFEEKYDMV---------- 113 (234)
T ss_dssp SSCEEEEETCTTSHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHTCSCTTEEEEESCTTTCCCCSCEEEE----------
T ss_pred CCCeEEEecCCCCHHHHHHHHhCCCCeEEEEECCHHHHHHHHHhhccCCCEEEEeCchhccCCCCCceEE----------
Confidence 447999999 789999999999 777766642 34899999999874 332 6888
Q ss_pred HHhhhhhhhhcCCCccchhhhhhcccccceeeeeeccCChHHHHHHHHHHHHHhccCC----------------------
Q 036440 88 IMIAFFIRLVVGRGRLHIFSWLNFMKRVINMQIIIHVFGDEESVKILKICREAITSKA---------------------- 145 (181)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~iLHdw~D~~~~~iL~~~~~a~~~~g---------------------- 145 (181)
++..++|.+++.+..++|++++..++|||
T Consensus 114 -----------------------------~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~ 164 (234)
T 3dtn_A 114 -----------------------------VSALSIHHLEDEDKKELYKRSYSILKESGIFINADLVHGETAFIENLNKTI 164 (234)
T ss_dssp -----------------------------EEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEECBCSSHHHHHHHHHH
T ss_pred -----------------------------EEeCccccCCHHHHHHHHHHHHHhcCCCcEEEEEEecCCCChhhhhHHHHH
Confidence 88999999999999999999999999999
Q ss_pred -------------------------ccCCHHHHHHHHHhCCCeEEEEEEcCCCCeEE
Q 036440 146 -------------------------KLSTEKELESLFVEVHFHHYKITPLFGLPSLI 177 (181)
Q Consensus 146 -------------------------~eRt~~E~~~Ll~~aGf~~~~i~~~~~~~~vi 177 (181)
+..|.+|+.++|++|||+.++++......+++
T Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~aGF~~v~~~~~~~~~~~~ 221 (234)
T 3dtn_A 165 WRQYVENSGLTEEEIAAGYERSKLDKDIEMNQQLNWLKEAGFRDVSCIYKYYQFAVM 221 (234)
T ss_dssp HHHHHHTSSCCHHHHHTTC----CCCCCBHHHHHHHHHHTTCEEEEEEEEETTEEEE
T ss_pred HHHHHHhcCCCHHHHHHHHHhcccccccCHHHHHHHHHHcCCCceeeeeeecceeEE
Confidence 22577899999999999999987554433333
|
| >4gek_A TRNA (CMO5U34)-methyltransferase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, rossmann fold; HET: GEK; 1.50A {Escherichia coli} PDB: 1im8_A* | Back alignment and structure |
|---|
Probab=99.08 E-value=1.6e-09 Score=90.65 Aligned_cols=114 Identities=13% Similarity=0.233 Sum_probs=90.9
Q ss_pred hcCCCeEEEec--------------CCCCceEEEeec-hhhhhhhc-------cCCCceEEecCCCC-CCCCcceEeccc
Q 036440 25 FERLGSLVDVG--------------AFPCVKCTEFDQ-PHVVANLL-------DTNNLKYLADDFFQ-SIPPVCMIPLRL 81 (181)
Q Consensus 25 ~~~~~~lvDvG--------------~~P~l~~~~~Dl-P~Vv~~a~-------~~~ri~~~~gDff~-~~P~~d~~~~~~ 81 (181)
.+.-.+|+|+| ..|+++.+.+|+ |..++.++ ...+|+++.+|+.+ +.+..|++
T Consensus 68 ~~~~~~vLDlGcGtG~~~~~la~~~~~~~~~v~gvD~s~~ml~~A~~~~~~~~~~~~v~~~~~D~~~~~~~~~d~v---- 143 (261)
T 4gek_A 68 VQPGTQVYDLGCSLGAATLSVRRNIHHDNCKIIAIDNSPAMIERCRRHIDAYKAPTPVDVIEGDIRDIAIENASMV---- 143 (261)
T ss_dssp CCTTCEEEEETCTTTHHHHHHHHTCCSSSCEEEEEESCHHHHHHHHHHHHTSCCSSCEEEEESCTTTCCCCSEEEE----
T ss_pred CCCCCEEEEEeCCCCHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHHHHHhhccCceEEEeecccccccccccccc----
Confidence 34557899999 458899999998 66777654 25689999999986 34557888
Q ss_pred cchhhhHHhhhhhhhhcCCCccchhhhhhcccccceeeeeeccCChHHHHHHHHHHHHHhccCC----------------
Q 036440 82 GYSHIKIMIAFFIRLVVGRGRLHIFSWLNFMKRVINMQIIIHVFGDEESVKILKICREAITSKA---------------- 145 (181)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~iLHdw~D~~~~~iL~~~~~a~~~~g---------------- 145 (181)
++..+||..++++..++|++++..++|||
T Consensus 144 -----------------------------------~~~~~l~~~~~~~~~~~l~~i~~~LkpGG~lii~e~~~~~~~~~~ 188 (261)
T 4gek_A 144 -----------------------------------VLNFTLQFLEPSERQALLDKIYQGLNPGGALVLSEKFSFEDAKVG 188 (261)
T ss_dssp -----------------------------------EEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEEBCCSSHHHH
T ss_pred -----------------------------------eeeeeeeecCchhHhHHHHHHHHHcCCCcEEEEEeccCCCCHHHH
Confidence 77889999999998999999999999999
Q ss_pred --------------------------------ccCCHHHHHHHHHhCCCeEEEEE-EcCCCCeEE
Q 036440 146 --------------------------------KLSTEKELESLFVEVHFHHYKIT-PLFGLPSLI 177 (181)
Q Consensus 146 --------------------------------~eRt~~E~~~Ll~~aGf~~~~i~-~~~~~~~vi 177 (181)
...|.+|+.++|++|||+.++++ ......++|
T Consensus 189 ~~~~~~~~~~~~~~g~s~~ei~~~~~~l~~~~~~~s~~~~~~~L~~AGF~~ve~~fq~~nF~~~i 253 (261)
T 4gek_A 189 ELLFNMHHDFKRANGYSELEISQKRSMLENVMLTDSVETHKARLHKAGFEHSELWFQCFNFGSLV 253 (261)
T ss_dssp HHHHHHHHHHHHHTTGGGSTTHHHHHHHHHHCCCBCHHHHHHHHHHHTCSEEEEEEEETTEEEEE
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHhhhcccccCCCHHHHHHHHHHcCCCeEEEEEEeccEEEEE
Confidence 23688999999999999999886 333334444
|
| >1ve3_A Hypothetical protein PH0226; dimer, riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function, NPPSFA; HET: SAM; 2.10A {Pyrococcus horikoshii} SCOP: c.66.1.43 | Back alignment and structure |
|---|
Probab=99.05 E-value=1.2e-09 Score=85.60 Aligned_cols=115 Identities=16% Similarity=0.163 Sum_probs=92.1
Q ss_pred cCCCeEEEec------------CCCCceEEEeec-hhhhhhhcc-----CCCceEEecCCCC-CCCC--cceEeccccch
Q 036440 26 ERLGSLVDVG------------AFPCVKCTEFDQ-PHVVANLLD-----TNNLKYLADDFFQ-SIPP--VCMIPLRLGYS 84 (181)
Q Consensus 26 ~~~~~lvDvG------------~~P~l~~~~~Dl-P~Vv~~a~~-----~~ri~~~~gDff~-~~P~--~d~~~~~~~~~ 84 (181)
....+|||+| .+| +.+.+|+ |..++.+.. ..+++++.+|+.+ ++|. .|++
T Consensus 37 ~~~~~vLDlG~G~G~~~~~l~~~~~--~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v------- 107 (227)
T 1ve3_A 37 KKRGKVLDLACGVGGFSFLLEDYGF--EVVGVDISEDMIRKAREYAKSRESNVEFIVGDARKLSFEDKTFDYV------- 107 (227)
T ss_dssp CSCCEEEEETCTTSHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHTTCCCEEEECCTTSCCSCTTCEEEE-------
T ss_pred CCCCeEEEEeccCCHHHHHHHHcCC--EEEEEECCHHHHHHHHHHHHhcCCCceEEECchhcCCCCCCcEEEE-------
Confidence 3467999999 555 7888888 777776643 3789999999987 3443 6888
Q ss_pred hhhHHhhhhhhhhcCCCccchhhhhhcccccceeeeeeccCChHHHHHHHHHHHHHhccCC--------------c----
Q 036440 85 HIKIMIAFFIRLVVGRGRLHIFSWLNFMKRVINMQIIIHVFGDEESVKILKICREAITSKA--------------K---- 146 (181)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~iLHdw~D~~~~~iL~~~~~a~~~~g--------------~---- 146 (181)
+...++|.+..++..++|++++..++||| .
T Consensus 108 --------------------------------~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~~~~ 155 (227)
T 1ve3_A 108 --------------------------------IFIDSIVHFEPLELNQVFKEVRRVLKPSGKFIMYFTDLRELLPRLKES 155 (227)
T ss_dssp --------------------------------EEESCGGGCCHHHHHHHHHHHHHHEEEEEEEEEEEECHHHHGGGCCC-
T ss_pred --------------------------------EEcCchHhCCHHHHHHHHHHHHHHcCCCcEEEEEecChHHHHHHHHhh
Confidence 77788888888888899999999999998 0
Q ss_pred -----------------cCC---H----------------HHHHHHHHhCCCeEEEEEEcCCCCeEEEEEC
Q 036440 147 -----------------LST---E----------------KELESLFVEVHFHHYKITPLFGLPSLIEVYP 181 (181)
Q Consensus 147 -----------------eRt---~----------------~E~~~Ll~~aGf~~~~i~~~~~~~~viE~~~ 181 (181)
+++ . +++.++|+++||+.+++.++.+...+||.+|
T Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~l~~~GF~~v~~~~~~~~~~~i~~~~ 226 (227)
T 1ve3_A 156 LVVGQKYWISKVIPDQEERTVVIEFKSEQDSFRVRFNVWGKTGVELLAKLYFTKEAEEKVGNYSYLTVYNP 226 (227)
T ss_dssp --------CCEEEEETTTTEEEEEC-----CCEEEEECCCHHHHHHHHTTTEEEEEEEEETTTEEEEEEEE
T ss_pred hhcccceeecccccCccccEEEEEeccchhhheeehhhhchHHHHHHHHHhhhHHHHHHhCCceeEEeeCC
Confidence 000 0 6899999999999999999987789999987
|
| >3dh0_A SAM dependent methyltransferase; cystal structure, PSI-2, NYSGXRC, structural genomics, protein structure initiative; HET: SAM; 2.72A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=98.89 E-value=2.2e-08 Score=78.35 Aligned_cols=122 Identities=16% Similarity=0.135 Sum_probs=96.6
Q ss_pred HHHHHHhhhhhcCCCeEEEec------------C-CCCceEEEeec-hhhhhhhcc------CCCceEEecCCCC-CCCC
Q 036440 15 SLALKYCKQIFERLGSLVDVG------------A-FPCVKCTEFDQ-PHVVANLLD------TNNLKYLADDFFQ-SIPP 73 (181)
Q Consensus 15 ~~~l~~~~~d~~~~~~lvDvG------------~-~P~l~~~~~Dl-P~Vv~~a~~------~~ri~~~~gDff~-~~P~ 73 (181)
..+++.+ +...-.+|||+| . .|..+.+.+|. |..++.+.. .+++++..+|+.+ ++|.
T Consensus 27 ~~~~~~~--~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~~ 104 (219)
T 3dh0_A 27 EKVLKEF--GLKEGMTVLDVGTGAGFYLPYLSKMVGEKGKVYAIDVQEEMVNYAWEKVNKLGLKNVEVLKSEENKIPLPD 104 (219)
T ss_dssp HHHHHHH--TCCTTCEEEESSCTTCTTHHHHHHHHTTTCEEEEEESCHHHHHHHHHHHHHHTCTTEEEEECBTTBCSSCS
T ss_pred HHHHHHh--CCCCCCEEEEEecCCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHcCCCcEEEEecccccCCCCC
Confidence 5677777 577778999999 3 37889999998 677766542 2489999999976 3443
Q ss_pred --cceEeccccchhhhHHhhhhhhhhcCCCccchhhhhhcccccceeeeeeccCChHHHHHHHHHHHHHhccCC------
Q 036440 74 --VCMIPLRLGYSHIKIMIAFFIRLVVGRGRLHIFSWLNFMKRVINMQIIIHVFGDEESVKILKICREAITSKA------ 145 (181)
Q Consensus 74 --~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~iLHdw~D~~~~~iL~~~~~a~~~~g------ 145 (181)
.|++ ++..++|.+.|. .++|++++..++|||
T Consensus 105 ~~fD~v---------------------------------------~~~~~l~~~~~~--~~~l~~~~~~LkpgG~l~i~~ 143 (219)
T 3dh0_A 105 NTVDFI---------------------------------------FMAFTFHELSEP--LKFLEELKRVAKPFAYLAIID 143 (219)
T ss_dssp SCEEEE---------------------------------------EEESCGGGCSSH--HHHHHHHHHHEEEEEEEEEEE
T ss_pred CCeeEE---------------------------------------EeehhhhhcCCH--HHHHHHHHHHhCCCeEEEEEE
Confidence 5888 888999999754 679999999999999
Q ss_pred -------------ccCCHHHHHHHHHhCCCeEEEEEEcCCCCeEEEE
Q 036440 146 -------------KLSTEKELESLFVEVHFHHYKITPLFGLPSLIEV 179 (181)
Q Consensus 146 -------------~eRt~~E~~~Ll~~aGf~~~~i~~~~~~~~viE~ 179 (181)
...|.+++..+++++||+++++....+....+.+
T Consensus 144 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~~~~~~~~~~~~ 190 (219)
T 3dh0_A 144 WKKEERDKGPPPEEVYSEWEVGLILEDAGIRVGRVVEVGKYCFGVYA 190 (219)
T ss_dssp ECSSCCSSSCCGGGSCCHHHHHHHHHHTTCEEEEEEEETTTEEEEEE
T ss_pred ecccccccCCchhcccCHHHHHHHHHHCCCEEEEEEeeCCceEEEEE
Confidence 4457899999999999999999887765444443
|
| >3ou2_A SAM-dependent methyltransferase; O-methyltransferase, SAH; HET: SAH; 1.50A {Streptomyces luridus} PDB: 3ou6_A* 3ou7_A* | Back alignment and structure |
|---|
Probab=98.81 E-value=9.7e-08 Score=74.03 Aligned_cols=113 Identities=13% Similarity=0.181 Sum_probs=88.4
Q ss_pred HHHHHHhhhhhcCCCeEEEec-----------CCCCceEEEeec-hhhhhhhcc--CCCceEEecCCCCCCCC--cceEe
Q 036440 15 SLALKYCKQIFERLGSLVDVG-----------AFPCVKCTEFDQ-PHVVANLLD--TNNLKYLADDFFQSIPP--VCMIP 78 (181)
Q Consensus 15 ~~~l~~~~~d~~~~~~lvDvG-----------~~P~l~~~~~Dl-P~Vv~~a~~--~~ri~~~~gDff~~~P~--~d~~~ 78 (181)
..+++... .+..-.+|||+| +. +.+.+.+|+ |..++.+.. .++++++.+|+.+..|. .|++
T Consensus 35 ~~~~~~l~-~~~~~~~vLdiG~G~G~~~~~l~~~-~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~d~~~~~~~~~~D~v- 111 (218)
T 3ou2_A 35 PAALERLR-AGNIRGDVLELASGTGYWTRHLSGL-ADRVTALDGSAEMIAEAGRHGLDNVEFRQQDLFDWTPDRQWDAV- 111 (218)
T ss_dssp HHHHHHHT-TTTSCSEEEEESCTTSHHHHHHHHH-SSEEEEEESCHHHHHHHGGGCCTTEEEEECCTTSCCCSSCEEEE-
T ss_pred HHHHHHHh-cCCCCCeEEEECCCCCHHHHHHHhc-CCeEEEEeCCHHHHHHHHhcCCCCeEEEecccccCCCCCceeEE-
Confidence 34555553 355557999999 22 568899998 666766653 36899999999876544 6888
Q ss_pred ccccchhhhHHhhhhhhhhcCCCccchhhhhhcccccceeeeeeccCChHHHHHHHHHHHHHhccCCc------------
Q 036440 79 LRLGYSHIKIMIAFFIRLVVGRGRLHIFSWLNFMKRVINMQIIIHVFGDEESVKILKICREAITSKAK------------ 146 (181)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~iLHdw~D~~~~~iL~~~~~a~~~~g~------------ 146 (181)
++..++|.+++++..++|++++..++|||+
T Consensus 112 --------------------------------------~~~~~l~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~ 153 (218)
T 3ou2_A 112 --------------------------------------FFAHWLAHVPDDRFEAFWESVRSAVAPGGVVEFVDVTDHERR 153 (218)
T ss_dssp --------------------------------------EEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEECCCC--
T ss_pred --------------------------------------EEechhhcCCHHHHHHHHHHHHHHcCCCeEEEEEeCCCCccc
Confidence 889999999999999999999999999980
Q ss_pred ----------------------------cCCHHHHHHHHHhCCCeEEEEE
Q 036440 147 ----------------------------LSTEKELESLFVEVHFHHYKIT 168 (181)
Q Consensus 147 ----------------------------eRt~~E~~~Ll~~aGf~~~~i~ 168 (181)
..|.+++.++|+++||++....
T Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~v~~~~ 203 (218)
T 3ou2_A 154 LEQQDDSEPEVAVRRTLQDGRSFRIVKVFRSPAELTERLTALGWSCSVDE 203 (218)
T ss_dssp ----------CEEEEECTTSCEEEEECCCCCHHHHHHHHHHTTEEEEEEE
T ss_pred cchhhhcccccceeeecCCcchhhHhhcCCCHHHHHHHHHHCCCEEEeee
Confidence 2389999999999999954433
|
| >1xtp_A LMAJ004091AAA; SGPP, structural genomics, PSI, protein structure initiative dependent methyltransferase; HET: SAI; 1.94A {Leishmania major} SCOP: c.66.1.42 | Back alignment and structure |
|---|
Probab=98.79 E-value=2.8e-08 Score=79.23 Aligned_cols=109 Identities=17% Similarity=0.214 Sum_probs=87.8
Q ss_pred hcCCCeEEEec------------CCCCceEEEeec-hhhhhhhcc----CCCceEEecCCCCC-CCC--cceEeccccch
Q 036440 25 FERLGSLVDVG------------AFPCVKCTEFDQ-PHVVANLLD----TNNLKYLADDFFQS-IPP--VCMIPLRLGYS 84 (181)
Q Consensus 25 ~~~~~~lvDvG------------~~P~l~~~~~Dl-P~Vv~~a~~----~~ri~~~~gDff~~-~P~--~d~~~~~~~~~ 84 (181)
...-.+||||| +. ..+.+.+|. |..++.+.. .++++++.+|+.+. +|. .|++
T Consensus 91 ~~~~~~vLDiG~G~G~~~~~l~~~~-~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v------- 162 (254)
T 1xtp_A 91 GHGTSRALDCGAGIGRITKNLLTKL-YATTDLLEPVKHMLEEAKRELAGMPVGKFILASMETATLPPNTYDLI------- 162 (254)
T ss_dssp TCCCSEEEEETCTTTHHHHHTHHHH-CSEEEEEESCHHHHHHHHHHTTTSSEEEEEESCGGGCCCCSSCEEEE-------
T ss_pred ccCCCEEEEECCCcCHHHHHHHHhh-cCEEEEEeCCHHHHHHHHHHhccCCceEEEEccHHHCCCCCCCeEEE-------
Confidence 34567999999 22 346889997 667766643 26899999998763 343 5888
Q ss_pred hhhHHhhhhhhhhcCCCccchhhhhhcccccceeeeeeccCChHHHHHHHHHHHHHhccCC-------------------
Q 036440 85 HIKIMIAFFIRLVVGRGRLHIFSWLNFMKRVINMQIIIHVFGDEESVKILKICREAITSKA------------------- 145 (181)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~iLHdw~D~~~~~iL~~~~~a~~~~g------------------- 145 (181)
+...+||.+++++..++|++++..++|||
T Consensus 163 --------------------------------~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~ 210 (254)
T 1xtp_A 163 --------------------------------VIQWTAIYLTDADFVKFFKHCQQALTPNGYIFFKENCSTGDRFLVDKE 210 (254)
T ss_dssp --------------------------------EEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEEBC--CCEEEETT
T ss_pred --------------------------------EEcchhhhCCHHHHHHHHHHHHHhcCCCeEEEEEecCCCcccceeccc
Confidence 88999999999999999999999999999
Q ss_pred ---ccCCHHHHHHHHHhCCCeEEEEEEcCCC
Q 036440 146 ---KLSTEKELESLFVEVHFHHYKITPLFGL 173 (181)
Q Consensus 146 ---~eRt~~E~~~Ll~~aGf~~~~i~~~~~~ 173 (181)
..+|.+++.++|+++||+++++....+.
T Consensus 211 ~~~~~~~~~~~~~~l~~aGf~~~~~~~~~~~ 241 (254)
T 1xtp_A 211 DSSLTRSDIHYKRLFNESGVRVVKEAFQEEW 241 (254)
T ss_dssp TTEEEBCHHHHHHHHHHHTCCEEEEEECTTC
T ss_pred CCcccCCHHHHHHHHHHCCCEEEEeeecCCC
Confidence 2468999999999999999998766543
|
| >3pfg_A N-methyltransferase; N,N-dimethyltransferase, SAM binding, DTDP-linked sugar BIND transferase; HET: SAM TLO; 1.35A {Streptomyces fradiae} PDB: 3pfh_A* 3px3_A* 3px2_A* | Back alignment and structure |
|---|
Probab=98.79 E-value=1e-07 Score=77.14 Aligned_cols=117 Identities=13% Similarity=0.035 Sum_probs=89.1
Q ss_pred hcCCCeEEEec----------CCCCceEEEeec-hhhhhhhcc-CCCceEEecCCCCC-CCC-cceEeccccchhhhHHh
Q 036440 25 FERLGSLVDVG----------AFPCVKCTEFDQ-PHVVANLLD-TNNLKYLADDFFQS-IPP-VCMIPLRLGYSHIKIMI 90 (181)
Q Consensus 25 ~~~~~~lvDvG----------~~P~l~~~~~Dl-P~Vv~~a~~-~~ri~~~~gDff~~-~P~-~d~~~~~~~~~~~~~~~ 90 (181)
.....+|||+| +--..+.+.+|+ |..++.+.. ..+++++.+|+.+. .+. .|++
T Consensus 48 ~~~~~~vLDiGcG~G~~~~~l~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~d~~~~~~~~~fD~v------------- 114 (263)
T 3pfg_A 48 SPKAASLLDVACGTGMHLRHLADSFGTVEGLELSADMLAIARRRNPDAVLHHGDMRDFSLGRRFSAV------------- 114 (263)
T ss_dssp CTTCCEEEEETCTTSHHHHHHTTTSSEEEEEESCHHHHHHHHHHCTTSEEEECCTTTCCCSCCEEEE-------------
T ss_pred CCCCCcEEEeCCcCCHHHHHHHHcCCeEEEEECCHHHHHHHHhhCCCCEEEECChHHCCccCCcCEE-------------
Confidence 34557999999 212447899998 777777654 45899999999873 333 6888
Q ss_pred hhhhhhhcCCCccchhhhhhcccccceeee-eeccCCh-HHHHHHHHHHHHHhccCCc----------------------
Q 036440 91 AFFIRLVVGRGRLHIFSWLNFMKRVINMQI-IIHVFGD-EESVKILKICREAITSKAK---------------------- 146 (181)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-iLHdw~D-~~~~~iL~~~~~a~~~~g~---------------------- 146 (181)
+... +||.+.+ ++..++|++++..++|||+
T Consensus 115 --------------------------~~~~~~l~~~~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~ 168 (263)
T 3pfg_A 115 --------------------------TCMFSSIGHLAGQAELDAALERFAAHVLPDGVVVVEPWWFPENFTPGYVAAGTV 168 (263)
T ss_dssp --------------------------EECTTGGGGSCHHHHHHHHHHHHHHTEEEEEEEEECCCCCTTTCCTTEEEEEEE
T ss_pred --------------------------EEcCchhhhcCCHHHHHHHHHHHHHhcCCCcEEEEEeccChhhcccccccccee
Confidence 6665 8888755 6777999999999999880
Q ss_pred ---------------------------------------------cCCHHHHHHHHHhCCCeEEEEEEcCCCCeEEEEE
Q 036440 147 ---------------------------------------------LSTEKELESLFVEVHFHHYKITPLFGLPSLIEVY 180 (181)
Q Consensus 147 ---------------------------------------------eRt~~E~~~Ll~~aGf~~~~i~~~~~~~~viE~~ 180 (181)
..|.+|++++|++|||+++++...++...++.++
T Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~el~~ll~~aGF~v~~~~~~~~~~~~~va~ 247 (263)
T 3pfg_A 169 EAGGTTVTRVSHSSREGEATRIEVHYLVAGPDRGITHHEESHRITLFTREQYERAFTAAGLSVEFMPGGPSGRGLFTGL 247 (263)
T ss_dssp EETTEEEEEEEEEEEETTEEEEEEEEEEEETTTEEEEEEEEEEEECCCHHHHHHHHHHTTEEEEEESSTTTSSCEEEEE
T ss_pred ccCCceeEEEEEEEecCcEEEEEEEEEEecCCCcEEEEEEEEEEEeecHHHHHHHHHHCCCEEEEeeCCCCCceeEEEe
Confidence 1278999999999999999998776666666554
|
| >3hnr_A Probable methyltransferase BT9727_4108; structural genomics, PSI-2, protein structure initiative; 2.80A {Bacillus thuringiensis serovarkonkukian} | Back alignment and structure |
|---|
Probab=98.78 E-value=1.3e-07 Score=73.89 Aligned_cols=123 Identities=11% Similarity=0.160 Sum_probs=93.3
Q ss_pred HHHHHhhhhhcCCCeEEEec----------CCCCceEEEeec-hhhhhhhcc--CCCceEEecCCCCC-CC-CcceEecc
Q 036440 16 LALKYCKQIFERLGSLVDVG----------AFPCVKCTEFDQ-PHVVANLLD--TNNLKYLADDFFQS-IP-PVCMIPLR 80 (181)
Q Consensus 16 ~~l~~~~~d~~~~~~lvDvG----------~~P~l~~~~~Dl-P~Vv~~a~~--~~ri~~~~gDff~~-~P-~~d~~~~~ 80 (181)
.+++.. ....-.+|||+| +--+.+.+.+|. |..++.+.. .++++++.+|+.+. .+ ..|++
T Consensus 36 ~~l~~~--~~~~~~~vLDiGcG~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~d~~~~~~~~~fD~v--- 110 (220)
T 3hnr_A 36 DILEDV--VNKSFGNVLEFGVGTGNLTNKLLLAGRTVYGIEPSREMRMIAKEKLPKEFSITEGDFLSFEVPTSIDTI--- 110 (220)
T ss_dssp HHHHHH--HHTCCSEEEEECCTTSHHHHHHHHTTCEEEEECSCHHHHHHHHHHSCTTCCEESCCSSSCCCCSCCSEE---
T ss_pred HHHHHh--hccCCCeEEEeCCCCCHHHHHHHhCCCeEEEEeCCHHHHHHHHHhCCCceEEEeCChhhcCCCCCeEEE---
Confidence 455655 345667999999 112668999998 566665543 25899999999873 33 36888
Q ss_pred ccchhhhHHhhhhhhhhcCCCccchhhhhhcccccceeeeeeccCChHHHHHHHHHHHHHhccCC---------------
Q 036440 81 LGYSHIKIMIAFFIRLVVGRGRLHIFSWLNFMKRVINMQIIIHVFGDEESVKILKICREAITSKA--------------- 145 (181)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~iLHdw~D~~~~~iL~~~~~a~~~~g--------------- 145 (181)
+...++|.+++.+..++|++++..++|||
T Consensus 111 ------------------------------------~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~ 154 (220)
T 3hnr_A 111 ------------------------------------VSTYAFHHLTDDEKNVAIAKYSQLLNKGGKIVFADTIFADQDAY 154 (220)
T ss_dssp ------------------------------------EEESCGGGSCHHHHHHHHHHHHHHSCTTCEEEEEEECBSSHHHH
T ss_pred ------------------------------------EECcchhcCChHHHHHHHHHHHHhcCCCCEEEEEeccccChHHH
Confidence 88999999999999999999999999999
Q ss_pred ----------------------ccCCHHHHHHHHHhCCCeEEEEEEcCCCCeEEEEE
Q 036440 146 ----------------------KLSTEKELESLFVEVHFHHYKITPLFGLPSLIEVY 180 (181)
Q Consensus 146 ----------------------~eRt~~E~~~Ll~~aGf~~~~i~~~~~~~~viE~~ 180 (181)
.-.|.++++++|+++||+++.+... +..-++++.
T Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~v~~~~~~-~~~w~~~~~ 210 (220)
T 3hnr_A 155 DKTVEAAKQRGFHQLANDLQTEYYTRIPVMQTIFENNGFHVTFTRLN-HFVWVMEAT 210 (220)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHSCCCBHHHHHHHHHHTTEEEEEEECS-SSEEEEEEE
T ss_pred HHHHHHHHhCCCccchhhcchhhcCCHHHHHHHHHHCCCEEEEeecc-ceEEEEeeh
Confidence 1227899999999999987765443 445555543
|
| >3ujc_A Phosphoethanolamine N-methyltransferase; parasite; HET: PC; 1.19A {Plasmodium falciparum} PDB: 3uj9_A* 3uj6_A* 3uj7_A* 3uj8_A* 3uja_A 3ujb_A* 4fgz_A* 3ujd_A* | Back alignment and structure |
|---|
Probab=98.78 E-value=5.3e-08 Score=77.72 Aligned_cols=106 Identities=17% Similarity=0.311 Sum_probs=87.6
Q ss_pred hcCCCeEEEec------------CCCCceEEEeec-hhhhhhhcc----CCCceEEecCCCC-CCCC--cceEeccccch
Q 036440 25 FERLGSLVDVG------------AFPCVKCTEFDQ-PHVVANLLD----TNNLKYLADDFFQ-SIPP--VCMIPLRLGYS 84 (181)
Q Consensus 25 ~~~~~~lvDvG------------~~P~l~~~~~Dl-P~Vv~~a~~----~~ri~~~~gDff~-~~P~--~d~~~~~~~~~ 84 (181)
...-.+|||+| ++ +.+.+.+|+ |..++.+.. .++++++.+|+.+ ++|. .|++
T Consensus 53 ~~~~~~vLdiG~G~G~~~~~l~~~~-~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v------- 124 (266)
T 3ujc_A 53 LNENSKVLDIGSGLGGGCMYINEKY-GAHTHGIDICSNIVNMANERVSGNNKIIFEANDILTKEFPENNFDLI------- 124 (266)
T ss_dssp CCTTCEEEEETCTTSHHHHHHHHHH-CCEEEEEESCHHHHHHHHHTCCSCTTEEEEECCTTTCCCCTTCEEEE-------
T ss_pred CCCCCEEEEECCCCCHHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHhhcCCCeEEEECccccCCCCCCcEEEE-------
Confidence 44557999999 34 678999998 566666543 2799999999986 3443 5888
Q ss_pred hhhHHhhhhhhhhcCCCccchhhhhhcccccceeeeeeccCChHHHHHHHHHHHHHhccCC-------------------
Q 036440 85 HIKIMIAFFIRLVVGRGRLHIFSWLNFMKRVINMQIIIHVFGDEESVKILKICREAITSKA------------------- 145 (181)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~iLHdw~D~~~~~iL~~~~~a~~~~g------------------- 145 (181)
+...++|.+++++..++|++++..++|||
T Consensus 125 --------------------------------~~~~~l~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~ 172 (266)
T 3ujc_A 125 --------------------------------YSRDAILALSLENKNKLFQKCYKWLKPTGTLLITDYCATEKENWDDEF 172 (266)
T ss_dssp --------------------------------EEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEEEESCGGGCCHHH
T ss_pred --------------------------------eHHHHHHhcChHHHHHHHHHHHHHcCCCCEEEEEEeccCCcccchHHH
Confidence 88999999999999999999999999999
Q ss_pred ---------ccCCHHHHHHHHHhCCCeEEEEEEc
Q 036440 146 ---------KLSTEKELESLFVEVHFHHYKITPL 170 (181)
Q Consensus 146 ---------~eRt~~E~~~Ll~~aGf~~~~i~~~ 170 (181)
...|.+++..+|+++||+++++...
T Consensus 173 ~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~~~ 206 (266)
T 3ujc_A 173 KEYVKQRKYTLITVEEYADILTACNFKNVVSKDL 206 (266)
T ss_dssp HHHHHHHTCCCCCHHHHHHHHHHTTCEEEEEEEC
T ss_pred HHHHhcCCCCCCCHHHHHHHHHHcCCeEEEEEeC
Confidence 2468999999999999999988754
|
| >3lcc_A Putative methyl chloride transferase; halide methyltransferase; HET: SAH; 1.80A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=98.77 E-value=3.3e-08 Score=78.69 Aligned_cols=105 Identities=15% Similarity=0.154 Sum_probs=88.3
Q ss_pred CeEEEec----------CCCCceEEEeec-hhhhhhhcc-------CCCceEEecCCCCCCCC--cceEeccccchhhhH
Q 036440 29 GSLVDVG----------AFPCVKCTEFDQ-PHVVANLLD-------TNNLKYLADDFFQSIPP--VCMIPLRLGYSHIKI 88 (181)
Q Consensus 29 ~~lvDvG----------~~P~l~~~~~Dl-P~Vv~~a~~-------~~ri~~~~gDff~~~P~--~d~~~~~~~~~~~~~ 88 (181)
.+|||+| +-++.+.+.+|+ |..++.+.. .++++++.+|+.+..|. .|++
T Consensus 68 ~~vLDiGcG~G~~~~~l~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~fD~v----------- 136 (235)
T 3lcc_A 68 GRALVPGCGGGHDVVAMASPERFVVGLDISESALAKANETYGSSPKAEYFSFVKEDVFTWRPTELFDLI----------- 136 (235)
T ss_dssp EEEEEETCTTCHHHHHHCBTTEEEEEECSCHHHHHHHHHHHTTSGGGGGEEEECCCTTTCCCSSCEEEE-----------
T ss_pred CCEEEeCCCCCHHHHHHHhCCCeEEEEECCHHHHHHHHHHhhccCCCcceEEEECchhcCCCCCCeeEE-----------
Confidence 5899999 668889999998 666665542 35799999999985444 6888
Q ss_pred HhhhhhhhhcCCCccchhhhhhcccccceeeeeeccCChHHHHHHHHHHHHHhccCC-----------------ccCCHH
Q 036440 89 MIAFFIRLVVGRGRLHIFSWLNFMKRVINMQIIIHVFGDEESVKILKICREAITSKA-----------------KLSTEK 151 (181)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~iLHdw~D~~~~~iL~~~~~a~~~~g-----------------~eRt~~ 151 (181)
+...++|.+++++..++|++++..++||| ...|.+
T Consensus 137 ----------------------------~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~ 188 (235)
T 3lcc_A 137 ----------------------------FDYVFFCAIEPEMRPAWAKSMYELLKPDGELITLMYPITDHVGGPPYKVDVS 188 (235)
T ss_dssp ----------------------------EEESSTTTSCGGGHHHHHHHHHHHEEEEEEEEEEECCCSCCCSCSSCCCCHH
T ss_pred ----------------------------EEChhhhcCCHHHHHHHHHHHHHHCCCCcEEEEEEecccccCCCCCccCCHH
Confidence 88999999999999999999999999999 225899
Q ss_pred HHHHHHHhCCCeEEEEEEcCC
Q 036440 152 ELESLFVEVHFHHYKITPLFG 172 (181)
Q Consensus 152 E~~~Ll~~aGf~~~~i~~~~~ 172 (181)
+++++|+++||+++.+...+.
T Consensus 189 ~~~~~l~~~Gf~~~~~~~~~~ 209 (235)
T 3lcc_A 189 TFEEVLVPIGFKAVSVEENPH 209 (235)
T ss_dssp HHHHHHGGGTEEEEEEEECTT
T ss_pred HHHHHHHHcCCeEEEEEecCC
Confidence 999999999999999886653
|
| >3dlc_A Putative S-adenosyl-L-methionine-dependent methyltransferase; structural genomics, joint center for structural genomics; HET: MSE SAM; 1.15A {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=98.76 E-value=1.4e-08 Score=78.38 Aligned_cols=103 Identities=13% Similarity=0.166 Sum_probs=80.7
Q ss_pred eEEEec-----------CCCCceEEEeec-hhhhhhhcc-------CCCceEEecCCCC-CCCC--cceEeccccchhhh
Q 036440 30 SLVDVG-----------AFPCVKCTEFDQ-PHVVANLLD-------TNNLKYLADDFFQ-SIPP--VCMIPLRLGYSHIK 87 (181)
Q Consensus 30 ~lvDvG-----------~~P~l~~~~~Dl-P~Vv~~a~~-------~~ri~~~~gDff~-~~P~--~d~~~~~~~~~~~~ 87 (181)
+|||+| +.|..+.+.+|. |..++.+.. .++++++.+|+.+ ++|. .|++
T Consensus 46 ~vLdiG~G~G~~~~~l~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v---------- 115 (219)
T 3dlc_A 46 TCIDIGSGPGALSIALAKQSDFSIRALDFSKHMNEIALKNIADANLNDRIQIVQGDVHNIPIEDNYADLI---------- 115 (219)
T ss_dssp EEEEETCTTSHHHHHHHHHSEEEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECBTTBCSSCTTCEEEE----------
T ss_pred EEEEECCCCCHHHHHHHHcCCCeEEEEECCHHHHHHHHHHHHhccccCceEEEEcCHHHCCCCcccccEE----------
Confidence 999999 338889999998 676665542 4689999999987 4553 5888
Q ss_pred HHhhhhhhhhcCCCccchhhhhhcccccceeeeeeccCChHHHHHHHHHHHHHhccCC----------------------
Q 036440 88 IMIAFFIRLVVGRGRLHIFSWLNFMKRVINMQIIIHVFGDEESVKILKICREAITSKA---------------------- 145 (181)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~iLHdw~D~~~~~iL~~~~~a~~~~g---------------------- 145 (181)
++..++|.+.| ..++|++++..++|||
T Consensus 116 -----------------------------~~~~~l~~~~~--~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~ 164 (219)
T 3dlc_A 116 -----------------------------VSRGSVFFWED--VATAFREIYRILKSGGKTYIGGGFGNKELRDSISAEMI 164 (219)
T ss_dssp -----------------------------EEESCGGGCSC--HHHHHHHHHHHEEEEEEEEEEECCSSHHHHHHHHHHHH
T ss_pred -----------------------------EECchHhhccC--HHHHHHHHHHhCCCCCEEEEEeccCcHHHHHHHHHHHH
Confidence 77788888854 3468888888888888
Q ss_pred --------------ccCCHHHHHHHHHhCCCeEEEEEEcCCC
Q 036440 146 --------------KLSTEKELESLFVEVHFHHYKITPLFGL 173 (181)
Q Consensus 146 --------------~eRt~~E~~~Ll~~aGf~~~~i~~~~~~ 173 (181)
...|.++++++|+++||+.+++.+....
T Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~v~~~~~~~~ 206 (219)
T 3dlc_A 165 RKNPDWKEFNRKNISQENVERFQNVLDEIGISSYEIILGDEG 206 (219)
T ss_dssp HHCTTHHHHHHHHSSHHHHHHHHHHHHHHTCSSEEEEEETTE
T ss_pred HhHHHHHhhhhhccccCCHHHHHHHHHHcCCCeEEEEecCCc
Confidence 2235699999999999999998876543
|
| >2qe6_A Uncharacterized protein TFU_2867; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: NEP SAM; 1.95A {Thermobifida fusca} | Back alignment and structure |
|---|
Probab=98.75 E-value=5.4e-08 Score=81.63 Aligned_cols=99 Identities=18% Similarity=0.265 Sum_probs=81.6
Q ss_pred CCCeEEEec---------------CCCCceEEEeec-hhhhhhhcc----CCCceEEecCCCCC------------CC--
Q 036440 27 RLGSLVDVG---------------AFPCVKCTEFDQ-PHVVANLLD----TNNLKYLADDFFQS------------IP-- 72 (181)
Q Consensus 27 ~~~~lvDvG---------------~~P~l~~~~~Dl-P~Vv~~a~~----~~ri~~~~gDff~~------------~P-- 72 (181)
...++|||| .+|+.+.+.+|+ |.+++.++. .++++++.+|+++. +|
T Consensus 77 ~~~~vLDlGcG~pt~G~~~~~~~~~~p~~~v~~vD~sp~~l~~Ar~~~~~~~~v~~~~~D~~~~~~~~~~~~~~~~~d~~ 156 (274)
T 2qe6_A 77 GISQFLDLGSGLPTVQNTHEVAQSVNPDARVVYVDIDPMVLTHGRALLAKDPNTAVFTADVRDPEYILNHPDVRRMIDFS 156 (274)
T ss_dssp CCCEEEEETCCSCCSSCHHHHHHHHCTTCEEEEEESSHHHHHHHHHHHTTCTTEEEEECCTTCHHHHHHSHHHHHHCCTT
T ss_pred CCCEEEEECCCCCCCChHHHHHHHhCCCCEEEEEECChHHHHHHHHhcCCCCCeEEEEeeCCCchhhhccchhhccCCCC
Confidence 457999999 358899999999 888887653 47999999999862 22
Q ss_pred CcceEeccccchhhhHHhhhhhhhhcCCCccchhhhhhcccccceeeeeeccCChHHHHHHHHHHHHHhccCC-------
Q 036440 73 PVCMIPLRLGYSHIKIMIAFFIRLVVGRGRLHIFSWLNFMKRVINMQIIIHVFGDEESVKILKICREAITSKA------- 145 (181)
Q Consensus 73 ~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~iLHdw~D~~~~~iL~~~~~a~~~~g------- 145 (181)
..|++ ++..+||.++|++..++|++++.+++|||
T Consensus 157 ~~d~v---------------------------------------~~~~vlh~~~d~~~~~~l~~~~~~L~pGG~l~i~~~ 197 (274)
T 2qe6_A 157 RPAAI---------------------------------------MLVGMLHYLSPDVVDRVVGAYRDALAPGSYLFMTSL 197 (274)
T ss_dssp SCCEE---------------------------------------EETTTGGGSCTTTHHHHHHHHHHHSCTTCEEEEEEE
T ss_pred CCEEE---------------------------------------EEechhhhCCcHHHHHHHHHHHHhCCCCcEEEEEEe
Confidence 35666 88889999999888999999999999998
Q ss_pred ----------------------ccCCHHHHHHHHHhCCCeEEE
Q 036440 146 ----------------------KLSTEKELESLFVEVHFHHYK 166 (181)
Q Consensus 146 ----------------------~eRt~~E~~~Ll~~aGf~~~~ 166 (181)
+.||.+|++++| +||+++.
T Consensus 198 ~~~~~~~~~~~~~~~~~~~~~~~~~s~~ei~~~l--~G~~l~~ 238 (274)
T 2qe6_A 198 VDTGLPAQQKLARITRENLGEGWARTPEEIERQF--GDFELVE 238 (274)
T ss_dssp BCSSCHHHHHHHHHHHHHHSCCCCBCHHHHHHTT--TTCEECT
T ss_pred cCcchHHHHHHHHHHHhcCCCCccCCHHHHHHHh--CCCeEcc
Confidence 357999999999 5998764
|
| >3g2m_A PCZA361.24; SAM-dependent methyltransferase, glycopeptide antibiotics biosynthesis, structural genomics; 2.00A {Amycolatopsis orientalis} PDB: 3g2o_A* 3g2p_A* 3g2q_A* | Back alignment and structure |
|---|
Probab=98.72 E-value=1.4e-07 Score=78.19 Aligned_cols=115 Identities=13% Similarity=0.133 Sum_probs=88.4
Q ss_pred CCeEEEec----------CCCCceEEEeec-hhhhhhhcc-----C----CCceEEecCCCCC-CCC-cceEeccccchh
Q 036440 28 LGSLVDVG----------AFPCVKCTEFDQ-PHVVANLLD-----T----NNLKYLADDFFQS-IPP-VCMIPLRLGYSH 85 (181)
Q Consensus 28 ~~~lvDvG----------~~P~l~~~~~Dl-P~Vv~~a~~-----~----~ri~~~~gDff~~-~P~-~d~~~~~~~~~~ 85 (181)
-.+||||| +--+.+.+.+|+ |..++.+.. . .+++++.+|+.+. .+. .|++
T Consensus 83 ~~~vLDlGcG~G~~~~~l~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~fD~v-------- 154 (299)
T 3g2m_A 83 SGPVLELAAGMGRLTFPFLDLGWEVTALELSTSVLAAFRKRLAEAPADVRDRCTLVQGDMSAFALDKRFGTV-------- 154 (299)
T ss_dssp CSCEEEETCTTTTTHHHHHTTTCCEEEEESCHHHHHHHHHHHHTSCHHHHTTEEEEECBTTBCCCSCCEEEE--------
T ss_pred CCcEEEEeccCCHHHHHHHHcCCeEEEEECCHHHHHHHHHHHhhcccccccceEEEeCchhcCCcCCCcCEE--------
Confidence 35999999 222568899998 667766642 1 7899999999873 333 5766
Q ss_pred hhHHhhhhhhhhcCCCccchhhhhhcccccce-eeeeeccCChHHHHHHHHHHHHHhccCC-----------c-------
Q 036440 86 IKIMIAFFIRLVVGRGRLHIFSWLNFMKRVIN-MQIIIHVFGDEESVKILKICREAITSKA-----------K------- 146 (181)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-l~~iLHdw~D~~~~~iL~~~~~a~~~~g-----------~------- 146 (181)
+ ...++|.+++++..++|++++..++||| .
T Consensus 155 -------------------------------~~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~ 203 (299)
T 3g2m_A 155 -------------------------------VISSGSINELDEADRRGLYASVREHLEPGGKFLLSLAMSEAAESEPLER 203 (299)
T ss_dssp -------------------------------EECHHHHTTSCHHHHHHHHHHHHHHEEEEEEEEEEEECCHHHHSCCCCC
T ss_pred -------------------------------EECCcccccCCHHHHHHHHHHHHHHcCCCcEEEEEeecCccccccchhc
Confidence 4 4477888888889999999999999998 0
Q ss_pred -----------------------------------------------cCCHHHHHHHHHhCCCeEEEEEEcCCC------
Q 036440 147 -----------------------------------------------LSTEKELESLFVEVHFHHYKITPLFGL------ 173 (181)
Q Consensus 147 -----------------------------------------------eRt~~E~~~Ll~~aGf~~~~i~~~~~~------ 173 (181)
..|.+|++++|++|||+++++.+....
T Consensus 204 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~el~~ll~~aGF~v~~~~~~~~~g~~~~~ 283 (299)
T 3g2m_A 204 KQELPGRSGRRYVLHVRHLPAEEIQEITIHPADETTDPFVVCTHRRRLLAPDQVVRELVRSGFDVIAQTPFASGGAGRKD 283 (299)
T ss_dssp -------------CCEEEEEEEEEEEEEEEESCC--CCCCEEEEEEEEECHHHHHHHHHHTTCEEEEEEEECTTSSSSCC
T ss_pred cceeecCCCcEEEEEEEEeccccEEEEEEEeccCCCCcEEEEEEEEEEeCHHHHHHHHHHCCCEEEEEEecCCCCCCccc
Confidence 139999999999999999999877632
Q ss_pred CeEEEEEC
Q 036440 174 PSLIEVYP 181 (181)
Q Consensus 174 ~~viE~~~ 181 (181)
..+||+.+
T Consensus 284 ~~lvea~~ 291 (299)
T 3g2m_A 284 MVLVEAVM 291 (299)
T ss_dssp EEEEEEEC
T ss_pred eeeeehhh
Confidence 25777753
|
| >3ocj_A Putative exported protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: PLM; 1.39A {Bordetella parapertussis} | Back alignment and structure |
|---|
Probab=98.69 E-value=1.7e-07 Score=78.17 Aligned_cols=107 Identities=12% Similarity=0.130 Sum_probs=85.3
Q ss_pred hcCCCeEEEec-------------CCCCceEEEeec-hhhhhhhcc-------CCCceEEecCCCCC-CCC-cceEeccc
Q 036440 25 FERLGSLVDVG-------------AFPCVKCTEFDQ-PHVVANLLD-------TNNLKYLADDFFQS-IPP-VCMIPLRL 81 (181)
Q Consensus 25 ~~~~~~lvDvG-------------~~P~l~~~~~Dl-P~Vv~~a~~-------~~ri~~~~gDff~~-~P~-~d~~~~~~ 81 (181)
+..-.+|+||| .+|+.+.+.+|+ |..++.+.. .+|++++.+|+.+. .|. .|++
T Consensus 116 l~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~fD~v---- 191 (305)
T 3ocj_A 116 LRPGCVVASVPCGWMSELLALDYSACPGVQLVGIDYDPEALDGATRLAAGHALAGQITLHRQDAWKLDTREGYDLL---- 191 (305)
T ss_dssp CCTTCEEEETTCTTCHHHHTSCCTTCTTCEEEEEESCHHHHHHHHHHHTTSTTGGGEEEEECCGGGCCCCSCEEEE----
T ss_pred CCCCCEEEEecCCCCHHHHHHHHhcCCCCeEEEEECCHHHHHHHHHHHHhcCCCCceEEEECchhcCCccCCeEEE----
Confidence 45667899999 478999999999 777766542 45799999999873 333 6888
Q ss_pred cchhhhHHhhhhhhhhcCCCccchhhhhhcccccceeeeeeccCC-hHHHHHHHHHHHHHhccCCc--------------
Q 036440 82 GYSHIKIMIAFFIRLVVGRGRLHIFSWLNFMKRVINMQIIIHVFG-DEESVKILKICREAITSKAK-------------- 146 (181)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~iLHdw~-D~~~~~iL~~~~~a~~~~g~-------------- 146 (181)
+...++|.++ ++...++|++++..++|||+
T Consensus 192 -----------------------------------~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~ 236 (305)
T 3ocj_A 192 -----------------------------------TSNGLNIYEPDDARVTELYRRFWQALKPGGALVTSFLTPPPALSP 236 (305)
T ss_dssp -----------------------------------ECCSSGGGCCCHHHHHHHHHHHHHHEEEEEEEEEECCCCCTTTCT
T ss_pred -----------------------------------EECChhhhcCCHHHHHHHHHHHHHhcCCCeEEEEEecCCCCcccc
Confidence 7777888874 55556899999999999880
Q ss_pred -------------------------------cCCHHHHHHHHHhCCCeEEEEEEc
Q 036440 147 -------------------------------LSTEKELESLFVEVHFHHYKITPL 170 (181)
Q Consensus 147 -------------------------------eRt~~E~~~Ll~~aGf~~~~i~~~ 170 (181)
.+|.+++.++|+++||+++++...
T Consensus 237 ~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGF~~v~~~~~ 291 (305)
T 3ocj_A 237 DSPWDMQAIDPHDLQLQQLVFTRLIQPRWNALRTHAQTRAQLEEAGFTDLRFEDD 291 (305)
T ss_dssp TCCCCGGGSCHHHHHHHHHHHHHTTCCSCCCCCCHHHHHHHHHHTTCEEEEEECC
T ss_pred cccceeeccccchhhhhhhHHHHHHhhhhhccCCHHHHHHHHHHCCCEEEEEEcc
Confidence 158999999999999999998854
|
| >1vl5_A Unknown conserved protein BH2331; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: MSE; 1.95A {Bacillus halodurans} SCOP: c.66.1.41 | Back alignment and structure |
|---|
Probab=98.67 E-value=1.7e-07 Score=75.63 Aligned_cols=111 Identities=12% Similarity=0.203 Sum_probs=82.3
Q ss_pred HHHHHHhhhhhcCCCeEEEec------------CCCCceEEEeec-hhhhhhhcc------CCCceEEecCCCC-CCCC-
Q 036440 15 SLALKYCKQIFERLGSLVDVG------------AFPCVKCTEFDQ-PHVVANLLD------TNNLKYLADDFFQ-SIPP- 73 (181)
Q Consensus 15 ~~~l~~~~~d~~~~~~lvDvG------------~~P~l~~~~~Dl-P~Vv~~a~~------~~ri~~~~gDff~-~~P~- 73 (181)
..+++.. ......+||||| .++ +.+.+|+ |..++.+.. .++++++.+|+.+ ++|.
T Consensus 27 ~~l~~~l--~~~~~~~vLDiGcG~G~~~~~l~~~~~--~v~gvD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~l~~~~~ 102 (260)
T 1vl5_A 27 AKLMQIA--ALKGNEEVLDVATGGGHVANAFAPFVK--KVVAFDLTEDILKVARAFIEGNGHQQVEYVQGDAEQMPFTDE 102 (260)
T ss_dssp HHHHHHH--TCCSCCEEEEETCTTCHHHHHHGGGSS--EEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCC-CCCSCTT
T ss_pred HHHHHHh--CCCCCCEEEEEeCCCCHHHHHHHHhCC--EEEEEeCCHHHHHHHHHHHHhcCCCceEEEEecHHhCCCCCC
Confidence 5666766 566778999999 333 8899998 666665542 2579999999976 3443
Q ss_pred -cceEeccccchhhhHHhhhhhhhhcCCCccchhhhhhcccccceeeeeeccCChHHHHHHHHHHHHHhccCC-------
Q 036440 74 -VCMIPLRLGYSHIKIMIAFFIRLVVGRGRLHIFSWLNFMKRVINMQIIIHVFGDEESVKILKICREAITSKA------- 145 (181)
Q Consensus 74 -~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~iLHdw~D~~~~~iL~~~~~a~~~~g------- 145 (181)
.|++ +...++|.++|.. ++|++++..++|||
T Consensus 103 ~fD~V---------------------------------------~~~~~l~~~~d~~--~~l~~~~r~LkpgG~l~~~~~ 141 (260)
T 1vl5_A 103 RFHIV---------------------------------------TCRIAAHHFPNPA--SFVSEAYRVLKKGGQLLLVDN 141 (260)
T ss_dssp CEEEE---------------------------------------EEESCGGGCSCHH--HHHHHHHHHEEEEEEEEEEEE
T ss_pred CEEEE---------------------------------------EEhhhhHhcCCHH--HHHHHHHHHcCCCCEEEEEEc
Confidence 5888 6677777777653 67788888888777
Q ss_pred ------------------------ccCCHHHHHHHHHhCCCeEEEEEEc
Q 036440 146 ------------------------KLSTEKELESLFVEVHFHHYKITPL 170 (181)
Q Consensus 146 ------------------------~eRt~~E~~~Ll~~aGf~~~~i~~~ 170 (181)
+..+.++|.++|+++||+++++...
T Consensus 142 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~~~~~~~ 190 (260)
T 1vl5_A 142 SAPENDAFDVFYNYVEKERDYSHHRAWKKSDWLKMLEEAGFELEELHCF 190 (260)
T ss_dssp EBCSSHHHHHHHHHHHHHHCTTCCCCCBHHHHHHHHHHHTCEEEEEEEE
T ss_pred CCCCCHHHHHHHHHHHHhcCccccCCCCHHHHHHHHHHCCCeEEEEEEe
Confidence 3467899999999999998877643
|
| >3h2b_A SAM-dependent methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.00A {Corynebacterium glutamicum atcc 13032} | Back alignment and structure |
|---|
Probab=98.66 E-value=9.4e-08 Score=74.10 Aligned_cols=107 Identities=15% Similarity=0.048 Sum_probs=87.8
Q ss_pred CCeEEEec----------CCCCceEEEeec-hhhhhhhcc-CCCceEEecCCCC-CCCC--cceEeccccchhhhHHhhh
Q 036440 28 LGSLVDVG----------AFPCVKCTEFDQ-PHVVANLLD-TNNLKYLADDFFQ-SIPP--VCMIPLRLGYSHIKIMIAF 92 (181)
Q Consensus 28 ~~~lvDvG----------~~P~l~~~~~Dl-P~Vv~~a~~-~~ri~~~~gDff~-~~P~--~d~~~~~~~~~~~~~~~~~ 92 (181)
-.+|||+| +--+.+.+.+|. |..++.+.. .++++++.+|+.+ +.|. .|++
T Consensus 42 ~~~vLDiGcG~G~~~~~l~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~d~~~~~~~~~~fD~v--------------- 106 (203)
T 3h2b_A 42 DGVILDVGSGTGRWTGHLASLGHQIEGLEPATRLVELARQTHPSVTFHHGTITDLSDSPKRWAGL--------------- 106 (203)
T ss_dssp CSCEEEETCTTCHHHHHHHHTTCCEEEECCCHHHHHHHHHHCTTSEEECCCGGGGGGSCCCEEEE---------------
T ss_pred CCeEEEecCCCCHHHHHHHhcCCeEEEEeCCHHHHHHHHHhCCCCeEEeCcccccccCCCCeEEE---------------
Confidence 67899999 111558899998 566666654 5689999999986 2333 5888
Q ss_pred hhhhhcCCCccchhhhhhcccccceeeeeeccCChHHHHHHHHHHHHHhccCC----------------------ccCCH
Q 036440 93 FIRLVVGRGRLHIFSWLNFMKRVINMQIIIHVFGDEESVKILKICREAITSKA----------------------KLSTE 150 (181)
Q Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~iLHdw~D~~~~~iL~~~~~a~~~~g----------------------~eRt~ 150 (181)
++..++|.+++++..++|++++..++||| ...|.
T Consensus 107 ------------------------~~~~~l~~~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~ 162 (203)
T 3h2b_A 107 ------------------------LAWYSLIHMGPGELPDALVALRMAVEDGGGLLMSFFSGPSLEPMYHPVATAYRWPL 162 (203)
T ss_dssp ------------------------EEESSSTTCCTTTHHHHHHHHHHTEEEEEEEEEEEECCSSCEEECCSSSCEEECCH
T ss_pred ------------------------EehhhHhcCCHHHHHHHHHHHHHHcCCCcEEEEEEccCCchhhhhchhhhhccCCH
Confidence 88899999998899999999999999999 24789
Q ss_pred HHHHHHHHhCCCeEEEEEEcCCC
Q 036440 151 KELESLFVEVHFHHYKITPLFGL 173 (181)
Q Consensus 151 ~E~~~Ll~~aGf~~~~i~~~~~~ 173 (181)
+++.++|+++||+++++...++.
T Consensus 163 ~~~~~~l~~~Gf~~~~~~~~~~~ 185 (203)
T 3h2b_A 163 PELAQALETAGFQVTSSHWDPRF 185 (203)
T ss_dssp HHHHHHHHHTTEEEEEEEECTTS
T ss_pred HHHHHHHHHCCCcEEEEEecCCC
Confidence 99999999999999999876654
|
| >1xxl_A YCGJ protein; structural genomics, protein structure initiative, PSI, NEW YORK SGX research center for structural genomics, nysgxrc; 2.10A {Bacillus subtilis} SCOP: c.66.1.41 PDB: 2glu_A* | Back alignment and structure |
|---|
Probab=98.66 E-value=2.1e-07 Score=74.75 Aligned_cols=118 Identities=15% Similarity=0.237 Sum_probs=82.6
Q ss_pred ccccchhHHHHHHhhhhhcCCCeEEEec------------CCCCceEEEeec-hhhhhhhcc------CCCceEEecCCC
Q 036440 8 DTQTVTASLALKYCKQIFERLGSLVDVG------------AFPCVKCTEFDQ-PHVVANLLD------TNNLKYLADDFF 68 (181)
Q Consensus 8 ~s~~~~~~~~l~~~~~d~~~~~~lvDvG------------~~P~l~~~~~Dl-P~Vv~~a~~------~~ri~~~~gDff 68 (181)
.++......+++.. +...-.+|||+| .++ +.+.+|+ |..++.+.. .++++++.+|+.
T Consensus 4 ~~~~~~~~~~~~~~--~~~~~~~vLDiGcG~G~~~~~l~~~~~--~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~ 79 (239)
T 1xxl_A 4 HHHHHSLGLMIKTA--ECRAEHRVLDIGAGAGHTALAFSPYVQ--ECIGVDATKEMVEVASSFAQEKGVENVRFQQGTAE 79 (239)
T ss_dssp --CHHHHHHHHHHH--TCCTTCEEEEESCTTSHHHHHHGGGSS--EEEEEESCHHHHHHHHHHHHHHTCCSEEEEECBTT
T ss_pred cccCCCcchHHHHh--CcCCCCEEEEEccCcCHHHHHHHHhCC--EEEEEECCHHHHHHHHHHHHHcCCCCeEEEecccc
Confidence 33333336677777 678888999999 333 7889998 566665542 258999999986
Q ss_pred C-CCCC--cceEeccccchhhhHHhhhhhhhhcCCCccchhhhhhcccccceeeeeeccCChHHHHHHHHHHHHHhccCC
Q 036440 69 Q-SIPP--VCMIPLRLGYSHIKIMIAFFIRLVVGRGRLHIFSWLNFMKRVINMQIIIHVFGDEESVKILKICREAITSKA 145 (181)
Q Consensus 69 ~-~~P~--~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~iLHdw~D~~~~~iL~~~~~a~~~~g 145 (181)
+ ++|. .|++ +...++|.|+|. .++|++++..++|||
T Consensus 80 ~~~~~~~~fD~v---------------------------------------~~~~~l~~~~~~--~~~l~~~~~~LkpgG 118 (239)
T 1xxl_A 80 SLPFPDDSFDII---------------------------------------TCRYAAHHFSDV--RKAVREVARVLKQDG 118 (239)
T ss_dssp BCCSCTTCEEEE---------------------------------------EEESCGGGCSCH--HHHHHHHHHHEEEEE
T ss_pred cCCCCCCcEEEE---------------------------------------EECCchhhccCH--HHHHHHHHHHcCCCc
Confidence 5 2332 5888 556666666553 356666666666666
Q ss_pred -------------------------------ccCCHHHHHHHHHhCCCeEEEEEEc
Q 036440 146 -------------------------------KLSTEKELESLFVEVHFHHYKITPL 170 (181)
Q Consensus 146 -------------------------------~eRt~~E~~~Ll~~aGf~~~~i~~~ 170 (181)
+..|.++|.++|+++||+++++...
T Consensus 119 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~aGf~~~~~~~~ 174 (239)
T 1xxl_A 119 RFLLVDHYAPEDPVLDEFVNHLNRLRDPSHVRESSLSEWQAMFSANQLAYQDIQKW 174 (239)
T ss_dssp EEEEEEECBCSSHHHHHHHHHHHHHHCTTCCCCCBHHHHHHHHHHTTEEEEEEEEE
T ss_pred EEEEEEcCCCCChhHHHHHHHHHHhccccccCCCCHHHHHHHHHHCCCcEEEEEee
Confidence 4578999999999999998887643
|
| >3g5l_A Putative S-adenosylmethionine dependent methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.35A {Listeria monocytogenes str} | Back alignment and structure |
|---|
Probab=98.65 E-value=7.8e-08 Score=77.17 Aligned_cols=102 Identities=13% Similarity=0.117 Sum_probs=81.2
Q ss_pred CCCeEEEec------------CCCCceEEEeec-hhhhhhhcc---CCCceEEecCCCC-CCCC--cceEeccccchhhh
Q 036440 27 RLGSLVDVG------------AFPCVKCTEFDQ-PHVVANLLD---TNNLKYLADDFFQ-SIPP--VCMIPLRLGYSHIK 87 (181)
Q Consensus 27 ~~~~lvDvG------------~~P~l~~~~~Dl-P~Vv~~a~~---~~ri~~~~gDff~-~~P~--~d~~~~~~~~~~~~ 87 (181)
.-.+|||+| ..+. +.+.+|+ |..++.+.. ..+++++.+|+.+ ++|. .|++
T Consensus 44 ~~~~vLD~GcG~G~~~~~l~~~~~~-~v~~vD~s~~~~~~a~~~~~~~~~~~~~~d~~~~~~~~~~fD~v---------- 112 (253)
T 3g5l_A 44 NQKTVLDLGCGFGWHCIYAAEHGAK-KVLGIDLSERMLTEAKRKTTSPVVCYEQKAIEDIAIEPDAYNVV---------- 112 (253)
T ss_dssp TTCEEEEETCTTCHHHHHHHHTTCS-EEEEEESCHHHHHHHHHHCCCTTEEEEECCGGGCCCCTTCEEEE----------
T ss_pred CCCEEEEECCCCCHHHHHHHHcCCC-EEEEEECCHHHHHHHHHhhccCCeEEEEcchhhCCCCCCCeEEE----------
Confidence 447899999 4443 8899998 667766643 4799999999975 3433 5888
Q ss_pred HHhhhhhhhhcCCCccchhhhhhcccccceeeeeeccCChHHHHHHHHHHHHHhccCC------------c---------
Q 036440 88 IMIAFFIRLVVGRGRLHIFSWLNFMKRVINMQIIIHVFGDEESVKILKICREAITSKA------------K--------- 146 (181)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~iLHdw~D~~~~~iL~~~~~a~~~~g------------~--------- 146 (181)
++..++|.+.| ..++|++++..++||| .
T Consensus 113 -----------------------------~~~~~l~~~~~--~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~ 161 (253)
T 3g5l_A 113 -----------------------------LSSLALHYIAS--FDDICKKVYINLKSSGSFIFSVEHPVFTADGRQDWYTD 161 (253)
T ss_dssp -----------------------------EEESCGGGCSC--HHHHHHHHHHHEEEEEEEEEEEECHHHHSSSSCSCEEC
T ss_pred -----------------------------EEchhhhhhhh--HHHHHHHHHHHcCCCcEEEEEeCCCccccCccccceec
Confidence 88889999855 5689999999999999 0
Q ss_pred -------------------------------cCCHHHHHHHHHhCCCeEEEEEEc
Q 036440 147 -------------------------------LSTEKELESLFVEVHFHHYKITPL 170 (181)
Q Consensus 147 -------------------------------eRt~~E~~~Ll~~aGf~~~~i~~~ 170 (181)
.+|.++|.++|++|||+++++...
T Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~l~~aGF~~~~~~e~ 216 (253)
T 3g5l_A 162 ETGNKLHWPVDRYFNESMRTSHFLGEDVQKYHRTVTTYIQTLLKNGFQINSVIEP 216 (253)
T ss_dssp SSCCEEEEEECCTTCCCEEEEEETTEEEEEECCCHHHHHHHHHHTTEEEEEEECC
T ss_pred cCCceEEEEeccccccceEEEeeccccCccEecCHHHHHHHHHHcCCeeeeeecC
Confidence 129999999999999999998844
|
| >3e23_A Uncharacterized protein RPA2492; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAM; 1.60A {Rhodopseudomonas palustris} | Back alignment and structure |
|---|
Probab=98.62 E-value=9.1e-08 Score=74.79 Aligned_cols=107 Identities=12% Similarity=0.104 Sum_probs=86.3
Q ss_pred hcCCCeEEEec----------CCCCceEEEeec-hhhhhhhccCCCceEEecCCCCCCCC--cceEeccccchhhhHHhh
Q 036440 25 FERLGSLVDVG----------AFPCVKCTEFDQ-PHVVANLLDTNNLKYLADDFFQSIPP--VCMIPLRLGYSHIKIMIA 91 (181)
Q Consensus 25 ~~~~~~lvDvG----------~~P~l~~~~~Dl-P~Vv~~a~~~~ri~~~~gDff~~~P~--~d~~~~~~~~~~~~~~~~ 91 (181)
+..-.+|||+| +-.+.+.+.+|+ |..++.+....++++..+|+.+.-+. .|++
T Consensus 41 ~~~~~~vLDiGcG~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~d~~~~~~~~~fD~v-------------- 106 (211)
T 3e23_A 41 LPAGAKILELGCGAGYQAEAMLAAGFDVDATDGSPELAAEASRRLGRPVRTMLFHQLDAIDAYDAV-------------- 106 (211)
T ss_dssp SCTTCEEEESSCTTSHHHHHHHHTTCEEEEEESCHHHHHHHHHHHTSCCEECCGGGCCCCSCEEEE--------------
T ss_pred cCCCCcEEEECCCCCHHHHHHHHcCCeEEEECCCHHHHHHHHHhcCCceEEeeeccCCCCCcEEEE--------------
Confidence 44557999999 222568899998 66777666544788889998753232 5888
Q ss_pred hhhhhhcCCCccchhhhhhcccccceeeeeeccCChHHHHHHHHHHHHHhccCC---------------------ccCCH
Q 036440 92 FFIRLVVGRGRLHIFSWLNFMKRVINMQIIIHVFGDEESVKILKICREAITSKA---------------------KLSTE 150 (181)
Q Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~iLHdw~D~~~~~iL~~~~~a~~~~g---------------------~eRt~ 150 (181)
+...+||.+++++..++|++++..++||| ...|.
T Consensus 107 -------------------------~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~ 161 (211)
T 3e23_A 107 -------------------------WAHACLLHVPRDELADVLKLIWRALKPGGLFYASYKSGEGEGRDKLARYYNYPSE 161 (211)
T ss_dssp -------------------------EECSCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEECCSSCEECTTSCEECCCCH
T ss_pred -------------------------EecCchhhcCHHHHHHHHHHHHHhcCCCcEEEEEEcCCCcccccccchhccCCCH
Confidence 88999999999999999999999999999 23699
Q ss_pred HHHHHHHHhCC-CeEEEEEEc
Q 036440 151 KELESLFVEVH-FHHYKITPL 170 (181)
Q Consensus 151 ~E~~~Ll~~aG-f~~~~i~~~ 170 (181)
+++..+|+++| |+++++...
T Consensus 162 ~~~~~~l~~aG~f~~~~~~~~ 182 (211)
T 3e23_A 162 EWLRARYAEAGTWASVAVESS 182 (211)
T ss_dssp HHHHHHHHHHCCCSEEEEEEE
T ss_pred HHHHHHHHhCCCcEEEEEEec
Confidence 99999999999 999988744
|
| >2o57_A Putative sarcosine dimethylglycine methyltransferase; structural genomics, protein structure initiative, PSI-2; 1.95A {Galdieria sulphuraria} SCOP: c.66.1.18 | Back alignment and structure |
|---|
Probab=98.62 E-value=2.2e-07 Score=76.42 Aligned_cols=104 Identities=15% Similarity=0.161 Sum_probs=82.8
Q ss_pred hcCCCeEEEec------------CCCCceEEEeec-hhhhhhhc-------cCCCceEEecCCCC-CCCC--cceEeccc
Q 036440 25 FERLGSLVDVG------------AFPCVKCTEFDQ-PHVVANLL-------DTNNLKYLADDFFQ-SIPP--VCMIPLRL 81 (181)
Q Consensus 25 ~~~~~~lvDvG------------~~P~l~~~~~Dl-P~Vv~~a~-------~~~ri~~~~gDff~-~~P~--~d~~~~~~ 81 (181)
+..-.+||||| ++ +.+.+.+|+ |..++.+. ..++++++.+|+.+ ++|. .|++
T Consensus 80 ~~~~~~vLDiGcG~G~~~~~l~~~~-~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v---- 154 (297)
T 2o57_A 80 LQRQAKGLDLGAGYGGAARFLVRKF-GVSIDCLNIAPVQNKRNEEYNNQAGLADNITVKYGSFLEIPCEDNSYDFI---- 154 (297)
T ss_dssp CCTTCEEEEETCTTSHHHHHHHHHH-CCEEEEEESCHHHHHHHHHHHHHHTCTTTEEEEECCTTSCSSCTTCEEEE----
T ss_pred CCCCCEEEEeCCCCCHHHHHHHHHh-CCEEEEEeCCHHHHHHHHHHHHhcCCCcceEEEEcCcccCCCCCCCEeEE----
Confidence 45667999999 33 458999998 55555443 24789999999986 3443 5888
Q ss_pred cchhhhHHhhhhhhhhcCCCccchhhhhhcccccceeeeeeccCChHHHHHHHHHHHHHhccCC----------------
Q 036440 82 GYSHIKIMIAFFIRLVVGRGRLHIFSWLNFMKRVINMQIIIHVFGDEESVKILKICREAITSKA---------------- 145 (181)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~iLHdw~D~~~~~iL~~~~~a~~~~g---------------- 145 (181)
+...++|.++| ..++|++++..++|||
T Consensus 155 -----------------------------------~~~~~l~~~~~--~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~ 197 (297)
T 2o57_A 155 -----------------------------------WSQDAFLHSPD--KLKVFQECARVLKPRGVMAITDPMKEDGIDKS 197 (297)
T ss_dssp -----------------------------------EEESCGGGCSC--HHHHHHHHHHHEEEEEEEEEEEEEECTTCCGG
T ss_pred -----------------------------------EecchhhhcCC--HHHHHHHHHHHcCCCeEEEEEEeccCCCCchH
Confidence 88889999887 5789999999999998
Q ss_pred ------------ccCCHHHHHHHHHhCCCeEEEEEEc
Q 036440 146 ------------KLSTEKELESLFVEVHFHHYKITPL 170 (181)
Q Consensus 146 ------------~eRt~~E~~~Ll~~aGf~~~~i~~~ 170 (181)
...|.+++.++|+++||+++++.+.
T Consensus 198 ~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~~~~~~~ 234 (297)
T 2o57_A 198 SIQPILDRIKLHDMGSLGLYRSLAKECGLVTLRTFSR 234 (297)
T ss_dssp GGHHHHHHHTCSSCCCHHHHHHHHHHTTEEEEEEEEC
T ss_pred HHHHHHHHhcCCCCCCHHHHHHHHHHCCCeEEEEEEC
Confidence 2358999999999999999988764
|
| >3dli_A Methyltransferase; PSI-II, NYSGXRC, structural genomics, protein structure initiative; 2.46A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=98.61 E-value=2.2e-07 Score=74.32 Aligned_cols=106 Identities=14% Similarity=0.239 Sum_probs=85.5
Q ss_pred hcCCCeEEEec----------CCCCceEEEeec-hhhhhhhccCCCceEEecCCCC---CCCC--cceEeccccchhhhH
Q 036440 25 FERLGSLVDVG----------AFPCVKCTEFDQ-PHVVANLLDTNNLKYLADDFFQ---SIPP--VCMIPLRLGYSHIKI 88 (181)
Q Consensus 25 ~~~~~~lvDvG----------~~P~l~~~~~Dl-P~Vv~~a~~~~ri~~~~gDff~---~~P~--~d~~~~~~~~~~~~~ 88 (181)
++.-.+||||| +-.+.+.+.+|+ |..++.+... ++++.+|..+ ++|. .|++
T Consensus 39 ~~~~~~vLDiGcG~G~~~~~l~~~~~~v~gvD~s~~~~~~a~~~--~~~~~~d~~~~~~~~~~~~fD~i----------- 105 (240)
T 3dli_A 39 FKGCRRVLDIGCGRGEFLELCKEEGIESIGVDINEDMIKFCEGK--FNVVKSDAIEYLKSLPDKYLDGV----------- 105 (240)
T ss_dssp TTTCSCEEEETCTTTHHHHHHHHHTCCEEEECSCHHHHHHHHTT--SEEECSCHHHHHHTSCTTCBSEE-----------
T ss_pred hcCCCeEEEEeCCCCHHHHHHHhCCCcEEEEECCHHHHHHHHhh--cceeeccHHHHhhhcCCCCeeEE-----------
Confidence 45567999999 112457899998 5666666533 9999999876 4554 6888
Q ss_pred HhhhhhhhhcCCCccchhhhhhcccccceeeeeeccCChHHHHHHHHHHHHHhccCC-----------------------
Q 036440 89 MIAFFIRLVVGRGRLHIFSWLNFMKRVINMQIIIHVFGDEESVKILKICREAITSKA----------------------- 145 (181)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~iLHdw~D~~~~~iL~~~~~a~~~~g----------------------- 145 (181)
+...++|.+++++..++|++++..++|||
T Consensus 106 ----------------------------~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~ 157 (240)
T 3dli_A 106 ----------------------------MISHFVEHLDPERLFELLSLCYSKMKYSSYIVIESPNPTSLYSLINFYIDPT 157 (240)
T ss_dssp ----------------------------EEESCGGGSCGGGHHHHHHHHHHHBCTTCCEEEEEECTTSHHHHHHHTTSTT
T ss_pred ----------------------------EECCchhhCCcHHHHHHHHHHHHHcCCCcEEEEEeCCcchhHHHHHHhcCcc
Confidence 88999999999999999999999999999
Q ss_pred --ccCCHHHHHHHHHhCCCeEEEEEEcC
Q 036440 146 --KLSTEKELESLFVEVHFHHYKITPLF 171 (181)
Q Consensus 146 --~eRt~~E~~~Ll~~aGf~~~~i~~~~ 171 (181)
...|.+++.++++++||+++++....
T Consensus 158 ~~~~~~~~~l~~~l~~aGf~~~~~~~~~ 185 (240)
T 3dli_A 158 HKKPVHPETLKFILEYLGFRDVKIEFFE 185 (240)
T ss_dssp CCSCCCHHHHHHHHHHHTCEEEEEEEEC
T ss_pred ccccCCHHHHHHHHHHCCCeEEEEEEec
Confidence 34688999999999999999887543
|
| >3mgg_A Methyltransferase; NYSGXRC, PSI-II, protein structure initiative, structural genomics, NEW YORK SGX research center for structural genomics; 1.86A {Methanosarcina mazei} | Back alignment and structure |
|---|
Probab=98.60 E-value=1.3e-07 Score=76.82 Aligned_cols=105 Identities=16% Similarity=0.308 Sum_probs=81.6
Q ss_pred hcCCCeEEEec------------CCCCceEEEeec-hhhhhhhcc------CCCceEEecCCCCC-CCC--cceEecccc
Q 036440 25 FERLGSLVDVG------------AFPCVKCTEFDQ-PHVVANLLD------TNNLKYLADDFFQS-IPP--VCMIPLRLG 82 (181)
Q Consensus 25 ~~~~~~lvDvG------------~~P~l~~~~~Dl-P~Vv~~a~~------~~ri~~~~gDff~~-~P~--~d~~~~~~~ 82 (181)
+..-.+|||+| .+|+.+.+.+|. |..++.+.. .+++++..+|+.+. .|. .|++
T Consensus 35 ~~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v----- 109 (276)
T 3mgg_A 35 YPPGAKVLEAGCGIGAQTVILAKNNPDAEITSIDISPESLEKARENTEKNGIKNVKFLQANIFSLPFEDSSFDHI----- 109 (276)
T ss_dssp CCTTCEEEETTCTTSHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCGGGCCSCTTCEEEE-----
T ss_pred CCCCCeEEEecCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEcccccCCCCCCCeeEE-----
Confidence 34567999999 688999999998 666665542 35899999999863 333 6888
Q ss_pred chhhhHHhhhhhhhhcCCCccchhhhhhcccccceeeeeeccCChHHHHHHHHHHHHHhccCC-----------------
Q 036440 83 YSHIKIMIAFFIRLVVGRGRLHIFSWLNFMKRVINMQIIIHVFGDEESVKILKICREAITSKA----------------- 145 (181)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~iLHdw~D~~~~~iL~~~~~a~~~~g----------------- 145 (181)
+...++|.++|.. .+|++++..++|||
T Consensus 110 ----------------------------------~~~~~l~~~~~~~--~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~ 153 (276)
T 3mgg_A 110 ----------------------------------FVCFVLEHLQSPE--EALKSLKKVLKPGGTITVIEGDHGSCYFHPE 153 (276)
T ss_dssp ----------------------------------EEESCGGGCSCHH--HHHHHHHHHEEEEEEEEEEEECGGGCEEESC
T ss_pred ----------------------------------EEechhhhcCCHH--HHHHHHHHHcCCCcEEEEEEcCCCCceECCC
Confidence 7778888887765 67888888888887
Q ss_pred --------------------ccCCHHHHHHHHHhCCCeEEEEEEc
Q 036440 146 --------------------KLSTEKELESLFVEVHFHHYKITPL 170 (181)
Q Consensus 146 --------------------~eRt~~E~~~Ll~~aGf~~~~i~~~ 170 (181)
...+.+++..+|+++||+++++.+.
T Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~aGf~~v~~~~~ 198 (276)
T 3mgg_A 154 GKKAIEAWNCLIRVQAYMKGNSLVGRQIYPLLQESGFEKIRVEPR 198 (276)
T ss_dssp CHHHHHHHHHHHHHHHHTTCCTTGGGGHHHHHHHTTCEEEEEEEE
T ss_pred cHHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHCCCCeEEEeeE
Confidence 2355688999999999999988643
|
| >1kpg_A CFA synthase;, cyclopropane-fatty-acyl-phospholipid synthase 1; mixed alpha beta fold, structural genomics, PSI; HET: SAH 16A; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kp9_A* 1kph_A* 1tpy_A* 1l1e_A* | Back alignment and structure |
|---|
Probab=98.59 E-value=4.6e-07 Score=74.09 Aligned_cols=106 Identities=14% Similarity=0.166 Sum_probs=81.3
Q ss_pred hhcCCCeEEEec------------CCCCceEEEeec-hhhhhhhcc-------CCCceEEecCCCCCCCC-cceEecccc
Q 036440 24 IFERLGSLVDVG------------AFPCVKCTEFDQ-PHVVANLLD-------TNNLKYLADDFFQSIPP-VCMIPLRLG 82 (181)
Q Consensus 24 d~~~~~~lvDvG------------~~P~l~~~~~Dl-P~Vv~~a~~-------~~ri~~~~gDff~~~P~-~d~~~~~~~ 82 (181)
+...-.+||||| +++ .+.+.+|+ |..++.+.. .+++++..+|+.+ +|. .|++
T Consensus 61 ~~~~~~~vLDiGcG~G~~~~~l~~~~~-~~v~gvd~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~-~~~~fD~v----- 133 (287)
T 1kpg_A 61 GLQPGMTLLDVGCGWGATMMRAVEKYD-VNVVGLTLSKNQANHVQQLVANSENLRSKRVLLAGWEQ-FDEPVDRI----- 133 (287)
T ss_dssp TCCTTCEEEEETCTTSHHHHHHHHHHC-CEEEEEESCHHHHHHHHHHHHTCCCCSCEEEEESCGGG-CCCCCSEE-----
T ss_pred CCCCcCEEEEECCcccHHHHHHHHHcC-CEEEEEECCHHHHHHHHHHHHhcCCCCCeEEEECChhh-CCCCeeEE-----
Confidence 345557999999 444 38999998 666665532 4689999999853 554 6888
Q ss_pred chhhhHHhhhhhhhhcCCCccchhhhhhcccccceeeeeeccCChHHHHHHHHHHHHHhccCC-----------------
Q 036440 83 YSHIKIMIAFFIRLVVGRGRLHIFSWLNFMKRVINMQIIIHVFGDEESVKILKICREAITSKA----------------- 145 (181)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~iLHdw~D~~~~~iL~~~~~a~~~~g----------------- 145 (181)
+...++|.+++++..++|++++..++|||
T Consensus 134 ----------------------------------~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~ 179 (287)
T 1kpg_A 134 ----------------------------------VSIGAFEHFGHERYDAFFSLAHRLLPADGVMLLHTITGLHPKEIHE 179 (287)
T ss_dssp ----------------------------------EEESCGGGTCTTTHHHHHHHHHHHSCTTCEEEEEEEEECCHHHHTT
T ss_pred ----------------------------------EEeCchhhcChHHHHHHHHHHHHhcCCCCEEEEEEecCCCcccccc
Confidence 77777888877777778888888888887
Q ss_pred ------------------------ccCCHHHHHHHHHhCCCeEEEEEEc
Q 036440 146 ------------------------KLSTEKELESLFVEVHFHHYKITPL 170 (181)
Q Consensus 146 ------------------------~eRt~~E~~~Ll~~aGf~~~~i~~~ 170 (181)
...|.+++.++++++||+++++...
T Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~l~~aGf~~~~~~~~ 228 (287)
T 1kpg_A 180 RGLPMSFTFARFLKFIVTEIFPGGRLPSIPMVQECASANGFTVTRVQSL 228 (287)
T ss_dssp TTCSCHHHHHHHHHHHHHHTSTTCCCCCHHHHHHHHHTTTCEEEEEEEC
T ss_pred ccccccccccchhhhHHheeCCCCCCCCHHHHHHHHHhCCcEEEEEEeC
Confidence 1248999999999999999988754
|
| >2ex4_A Adrenal gland protein AD-003; methyltransferase, structural genomics, SGC, structural genomics consortium; HET: SAH; 1.75A {Homo sapiens} SCOP: c.66.1.42 | Back alignment and structure |
|---|
Probab=98.57 E-value=4.3e-07 Score=72.63 Aligned_cols=106 Identities=11% Similarity=0.145 Sum_probs=85.1
Q ss_pred CCeEEEec------------CCCCceEEEeec-hhhhhhhcc------CCCceEEecCCCCC-CCC--cceEeccccchh
Q 036440 28 LGSLVDVG------------AFPCVKCTEFDQ-PHVVANLLD------TNNLKYLADDFFQS-IPP--VCMIPLRLGYSH 85 (181)
Q Consensus 28 ~~~lvDvG------------~~P~l~~~~~Dl-P~Vv~~a~~------~~ri~~~~gDff~~-~P~--~d~~~~~~~~~~ 85 (181)
-.+|||+| ++ ..+.+.+|+ |..++.+.. ..+++++.+|+.+. .+. .|++
T Consensus 80 ~~~vLDiGcG~G~~~~~l~~~~-~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v-------- 150 (241)
T 2ex4_A 80 TSCALDCGAGIGRITKRLLLPL-FREVDMVDITEDFLVQAKTYLGEEGKRVRNYFCCGLQDFTPEPDSYDVI-------- 150 (241)
T ss_dssp CSEEEEETCTTTHHHHHTTTTT-CSEEEEEESCHHHHHHHHHHTGGGGGGEEEEEECCGGGCCCCSSCEEEE--------
T ss_pred CCEEEEECCCCCHHHHHHHHhc-CCEEEEEeCCHHHHHHHHHHhhhcCCceEEEEEcChhhcCCCCCCEEEE--------
Confidence 57999999 22 458899998 666665542 34689999998653 332 5888
Q ss_pred hhHHhhhhhhhhcCCCccchhhhhhcccccceeeeeeccCChHHHHHHHHHHHHHhccCC--------------------
Q 036440 86 IKIMIAFFIRLVVGRGRLHIFSWLNFMKRVINMQIIIHVFGDEESVKILKICREAITSKA-------------------- 145 (181)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~iLHdw~D~~~~~iL~~~~~a~~~~g-------------------- 145 (181)
++..++|.+++++..++|+.++..++|||
T Consensus 151 -------------------------------~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~ 199 (241)
T 2ex4_A 151 -------------------------------WIQWVIGHLTDQHLAEFLRRCKGSLRPNGIIVIKDNMAQEGVILDDVDS 199 (241)
T ss_dssp -------------------------------EEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEEEBSSSEEEETTTT
T ss_pred -------------------------------EEcchhhhCCHHHHHHHHHHHHHhcCCCeEEEEEEccCCCcceecccCC
Confidence 88999999999999999999999999999
Q ss_pred -ccCCHHHHHHHHHhCCCeEEEEEEcCCC
Q 036440 146 -KLSTEKELESLFVEVHFHHYKITPLFGL 173 (181)
Q Consensus 146 -~eRt~~E~~~Ll~~aGf~~~~i~~~~~~ 173 (181)
..+|.+++.++|+++||+++++....+.
T Consensus 200 ~~~~~~~~~~~~l~~aGf~~~~~~~~~~~ 228 (241)
T 2ex4_A 200 SVCRDLDVVRRIICSAGLSLLAEERQENL 228 (241)
T ss_dssp EEEEBHHHHHHHHHHTTCCEEEEEECCSC
T ss_pred cccCCHHHHHHHHHHcCCeEEEeeecCCC
Confidence 1348999999999999999999876553
|
| >3vc1_A Geranyl diphosphate 2-C-methyltransferase; rossmann fold, methyltransferase fold, SAM-dependent methyltransferase; HET: SAH GST GOL; 1.82A {Streptomyces coelicolor} PDB: 3vc2_A* 4f84_A* 4f85_A 4f86_A* | Back alignment and structure |
|---|
Probab=98.56 E-value=2.8e-07 Score=77.12 Aligned_cols=104 Identities=8% Similarity=-0.023 Sum_probs=82.9
Q ss_pred hcCCCeEEEec-----------CCCCceEEEeec-hhhhhhhc-------cCCCceEEecCCCC-CCCC--cceEecccc
Q 036440 25 FERLGSLVDVG-----------AFPCVKCTEFDQ-PHVVANLL-------DTNNLKYLADDFFQ-SIPP--VCMIPLRLG 82 (181)
Q Consensus 25 ~~~~~~lvDvG-----------~~P~l~~~~~Dl-P~Vv~~a~-------~~~ri~~~~gDff~-~~P~--~d~~~~~~~ 82 (181)
+..-.+|||+| +..+.+.+.+|+ |..++.+. ..++++++.+|+.+ ++|. .|++
T Consensus 115 ~~~~~~vLDiGcG~G~~~~~la~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~V----- 189 (312)
T 3vc1_A 115 AGPDDTLVDAGCGRGGSMVMAHRRFGSRVEGVTLSAAQADFGNRRARELRIDDHVRSRVCNMLDTPFDKGAVTAS----- 189 (312)
T ss_dssp CCTTCEEEEESCTTSHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTSCCCCTTCEEEE-----
T ss_pred CCCCCEEEEecCCCCHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCceEEEECChhcCCCCCCCEeEE-----
Confidence 55567999999 222678999998 66666554 24689999999986 3443 6888
Q ss_pred chhhhHHhhhhhhhhcCCCccchhhhhhcccccceeeeeeccCChHHHHHHHHHHHHHhccCC-----------------
Q 036440 83 YSHIKIMIAFFIRLVVGRGRLHIFSWLNFMKRVINMQIIIHVFGDEESVKILKICREAITSKA----------------- 145 (181)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~iLHdw~D~~~~~iL~~~~~a~~~~g----------------- 145 (181)
+...++|.++ ..++|++++..++|||
T Consensus 190 ----------------------------------~~~~~l~~~~---~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~ 232 (312)
T 3vc1_A 190 ----------------------------------WNNESTMYVD---LHDLFSEHSRFLKVGGRYVTITGCWNPRYGQPS 232 (312)
T ss_dssp ----------------------------------EEESCGGGSC---HHHHHHHHHHHEEEEEEEEEEEEEECTTTCSCC
T ss_pred ----------------------------------EECCchhhCC---HHHHHHHHHHHcCCCcEEEEEEccccccccchh
Confidence 7888898884 7889999999999999
Q ss_pred ------------ccCCHHHHHHHHHhCCCeEEEEEEc
Q 036440 146 ------------KLSTEKELESLFVEVHFHHYKITPL 170 (181)
Q Consensus 146 ------------~eRt~~E~~~Ll~~aGf~~~~i~~~ 170 (181)
..+|.+++.++|+++||+++++...
T Consensus 233 ~~~~~~~~~~~~~~~s~~~~~~~l~~aGf~~~~~~~~ 269 (312)
T 3vc1_A 233 KWVSQINAHFECNIHSRREYLRAMADNRLVPHTIVDL 269 (312)
T ss_dssp HHHHHHHHHHTCCCCBHHHHHHHHHTTTEEEEEEEEC
T ss_pred HHHHHHHhhhcCCCCCHHHHHHHHHHCCCEEEEEEeC
Confidence 2358999999999999999988764
|
| >3g07_A 7SK snRNA methylphosphate capping enzyme; structural genomics consortium (SGC), methyltransferase, phosphoprotein, S-adenosyl-L-methionine; HET: SAM; 2.65A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.55 E-value=1e-07 Score=79.69 Aligned_cols=54 Identities=15% Similarity=0.260 Sum_probs=42.6
Q ss_pred eeeeee---c-cCChHHHHHHHHHHHHHhccCC----------------------------ccCCHHHHHHHHHh--CCC
Q 036440 117 NMQIII---H-VFGDEESVKILKICREAITSKA----------------------------KLSTEKELESLFVE--VHF 162 (181)
Q Consensus 117 ~l~~iL---H-dw~D~~~~~iL~~~~~a~~~~g----------------------------~eRt~~E~~~Ll~~--aGf 162 (181)
+...++ | +|+++...++|++++..++||| ...+.+++.++|.+ +||
T Consensus 182 ~~~~vl~~ihl~~~~~~~~~~l~~~~~~LkpGG~lil~~~~~~~y~~~~~~~~~~~~~~~~~~~~p~~~~~~L~~~~~GF 261 (292)
T 3g07_A 182 LCLSLTKWVHLNWGDEGLKRMFRRIYRHLRPGGILVLEPQPWSSYGKRKTLTETIYKNYYRIQLKPEQFSSYLTSPDVGF 261 (292)
T ss_dssp EEESCHHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEECCCHHHHHTTTTSCHHHHHHHHHCCCCGGGHHHHHTSTTTCC
T ss_pred EEChHHHHhhhcCCHHHHHHHHHHHHHHhCCCcEEEEecCCchhhhhhhcccHHHHhhhhcEEEcHHHHHHHHHhcCCCc
Confidence 666666 4 5699999999999999999999 22336788999999 999
Q ss_pred eEEEEEEc
Q 036440 163 HHYKITPL 170 (181)
Q Consensus 163 ~~~~i~~~ 170 (181)
+.+++...
T Consensus 262 ~~~~~~~~ 269 (292)
T 3g07_A 262 SSYELVAT 269 (292)
T ss_dssp CEEEEC--
T ss_pred eEEEEecc
Confidence 98887654
|
| >3bxo_A N,N-dimethyltransferase; desosamine, sugar, carbohydrate, antibiotic, SAM, adoMet; HET: SAM UPP; 2.00A {Streptomyces venezuelae} | Back alignment and structure |
|---|
Probab=98.54 E-value=7.7e-07 Score=70.02 Aligned_cols=115 Identities=14% Similarity=0.102 Sum_probs=85.0
Q ss_pred cCCCeEEEec------------CCCCceEEEeec-hhhhhhhcc-CCCceEEecCCCCC-CCC-cceEeccccchhhhHH
Q 036440 26 ERLGSLVDVG------------AFPCVKCTEFDQ-PHVVANLLD-TNNLKYLADDFFQS-IPP-VCMIPLRLGYSHIKIM 89 (181)
Q Consensus 26 ~~~~~lvDvG------------~~P~l~~~~~Dl-P~Vv~~a~~-~~ri~~~~gDff~~-~P~-~d~~~~~~~~~~~~~~ 89 (181)
....+|||+| .++ +.+.+|+ |..++.+.. .++++++.+|+.+. .+. .|++
T Consensus 39 ~~~~~vLdiG~G~G~~~~~l~~~~~--~v~~~D~s~~~~~~a~~~~~~~~~~~~d~~~~~~~~~~D~v------------ 104 (239)
T 3bxo_A 39 PEASSLLDVACGTGTHLEHFTKEFG--DTAGLELSEDMLTHARKRLPDATLHQGDMRDFRLGRKFSAV------------ 104 (239)
T ss_dssp TTCCEEEEETCTTSHHHHHHHHHHS--EEEEEESCHHHHHHHHHHCTTCEEEECCTTTCCCSSCEEEE------------
T ss_pred CCCCeEEEecccCCHHHHHHHHhCC--cEEEEeCCHHHHHHHHHhCCCCEEEECCHHHcccCCCCcEE------------
Confidence 4567999999 344 7888998 777776653 46799999999863 232 5777
Q ss_pred hhhhhhhhcCCCccchhhhhhcccccce-eeeeeccC-ChHHHHHHHHHHHHHhccCC----------------------
Q 036440 90 IAFFIRLVVGRGRLHIFSWLNFMKRVIN-MQIIIHVF-GDEESVKILKICREAITSKA---------------------- 145 (181)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-l~~iLHdw-~D~~~~~iL~~~~~a~~~~g---------------------- 145 (181)
+ ...++|.. +.++..++|++++..++|||
T Consensus 105 ---------------------------~~~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~ 157 (239)
T 3bxo_A 105 ---------------------------VSMFSSVGYLKTTEELGAAVASFAEHLEPGGVVVVEPWWFPETFADGWVSADV 157 (239)
T ss_dssp ---------------------------EECTTGGGGCCSHHHHHHHHHHHHHTEEEEEEEEECCCCCTTTCCTTCEEEEE
T ss_pred ---------------------------EEcCchHhhcCCHHHHHHHHHHHHHhcCCCeEEEEEeccCcccccccceEeeE
Confidence 4 34356655 44777888999999988887
Q ss_pred ---------------------------------------------ccCCHHHHHHHHHhCCCeEEEEEEcCCCCeEEEEE
Q 036440 146 ---------------------------------------------KLSTEKELESLFVEVHFHHYKITPLFGLPSLIEVY 180 (181)
Q Consensus 146 ---------------------------------------------~eRt~~E~~~Ll~~aGf~~~~i~~~~~~~~viE~~ 180 (181)
+..|.+||+.+|++|||+++.+....+...++.++
T Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~ll~~aGF~v~~~~~~~~~~~~~va~ 237 (239)
T 3bxo_A 158 VRRDGRTVARVSHSVREGNATRMEVHFTVADPGKGVRHFSDVHLITLFHQAEYEAAFTAAGLRVEYLEGGPSGRGLFVGV 237 (239)
T ss_dssp EEETTEEEEEEEEEEEETTEEEEEEEEEEEETTTEEEEEEEEEEEECCCHHHHHHHHHHTTEEEEEESSTTTSSCEEEEE
T ss_pred EecCCceEEEEEEEecCCCEEEEEEEEEEecCCCcceEEEEEEEeeecCHHHHHHHHHHCCCEEEEeEcCCCCceEEEEe
Confidence 01378999999999999888777666667777775
Q ss_pred C
Q 036440 181 P 181 (181)
Q Consensus 181 ~ 181 (181)
|
T Consensus 238 K 238 (239)
T 3bxo_A 238 P 238 (239)
T ss_dssp E
T ss_pred c
Confidence 4
|
| >3sm3_A SAM-dependent methyltransferases; NESG, structural genomics, PSI-biology, protein structure in northeast structural genomics; 2.20A {Methanosarcina mazei} | Back alignment and structure |
|---|
Probab=98.54 E-value=1.8e-06 Score=67.35 Aligned_cols=105 Identities=18% Similarity=0.189 Sum_probs=81.6
Q ss_pred hcCCCeEEEec----------CCCCceEEEeec-hhhhhhhcc-----------CCCceEEecCCCCC-CCC--cceEec
Q 036440 25 FERLGSLVDVG----------AFPCVKCTEFDQ-PHVVANLLD-----------TNNLKYLADDFFQS-IPP--VCMIPL 79 (181)
Q Consensus 25 ~~~~~~lvDvG----------~~P~l~~~~~Dl-P~Vv~~a~~-----------~~ri~~~~gDff~~-~P~--~d~~~~ 79 (181)
+..-.+|||+| +--+.+.+.+|+ |..++.+.. .+++++..+|+.+. +|. .|++
T Consensus 28 ~~~~~~vLdiG~G~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v-- 105 (235)
T 3sm3_A 28 LQEDDEILDIGCGSGKISLELASKGYSVTGIDINSEAIRLAETAARSPGLNQKTGGKAEFKVENASSLSFHDSSFDFA-- 105 (235)
T ss_dssp CCTTCEEEEETCTTSHHHHHHHHTTCEEEEEESCHHHHHHHHHHTTCCSCCSSSSCEEEEEECCTTSCCSCTTCEEEE--
T ss_pred CCCCCeEEEECCCCCHHHHHHHhCCCeEEEEECCHHHHHHHHHHHHhcCCccccCcceEEEEecccccCCCCCceeEE--
Confidence 34567999999 112668999998 666665542 23689999999863 333 5888
Q ss_pred cccchhhhHHhhhhhhhhcCCCccchhhhhhcccccceeeeeeccCCh-HHHHHHHHHHHHHhccCC-------------
Q 036440 80 RLGYSHIKIMIAFFIRLVVGRGRLHIFSWLNFMKRVINMQIIIHVFGD-EESVKILKICREAITSKA------------- 145 (181)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~iLHdw~D-~~~~~iL~~~~~a~~~~g------------- 145 (181)
++..++|.+.| +...++|++++..++|||
T Consensus 106 -------------------------------------~~~~~l~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~ 148 (235)
T 3sm3_A 106 -------------------------------------VMQAFLTSVPDPKERSRIIKEVFRVLKPGAYLYLVEFGQNWHL 148 (235)
T ss_dssp -------------------------------------EEESCGGGCCCHHHHHHHHHHHHHHEEEEEEEEEEEEBCCTTS
T ss_pred -------------------------------------EEcchhhcCCCHHHHHHHHHHHHHHcCCCeEEEEEECCcchhH
Confidence 88889999865 557789999999999998
Q ss_pred ----------------------------------ccCCHHHHHHHHHhCCCeEEEEE
Q 036440 146 ----------------------------------KLSTEKELESLFVEVHFHHYKIT 168 (181)
Q Consensus 146 ----------------------------------~eRt~~E~~~Ll~~aGf~~~~i~ 168 (181)
+.+|.+|++++|+++||+++++.
T Consensus 149 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~aGf~~~~~~ 205 (235)
T 3sm3_A 149 KLYRKRYLHDFPITKEEGSFLARDPETGETEFIAHHFTEKELVFLLTDCRFEIDYFR 205 (235)
T ss_dssp HHHHHHHHHHHHHHCSTTEEEEECTTTCCEEEEEECBCHHHHHHHHHTTTEEEEEEE
T ss_pred HHHHHHhhhhccchhhhcceEecccccCCcceeeEeCCHHHHHHHHHHcCCEEEEEE
Confidence 14689999999999999999886
|
| >3jwg_A HEN1, methyltransferase type 12; 1.90A {Clostridium thermocellum} PDB: 3jwi_A | Back alignment and structure |
|---|
Probab=98.52 E-value=8.9e-07 Score=69.48 Aligned_cols=110 Identities=11% Similarity=0.041 Sum_probs=85.3
Q ss_pred HHHHHhhhhhcCCCeEEEec------------CCCCceEEEeec-hhhhhhhcc-------C----CCceEEecCCCCC-
Q 036440 16 LALKYCKQIFERLGSLVDVG------------AFPCVKCTEFDQ-PHVVANLLD-------T----NNLKYLADDFFQS- 70 (181)
Q Consensus 16 ~~l~~~~~d~~~~~~lvDvG------------~~P~l~~~~~Dl-P~Vv~~a~~-------~----~ri~~~~gDff~~- 70 (181)
.+++.. ......+|||+| .+|..+.+.+|+ |..++.+.. . ++++++.+|+...
T Consensus 20 ~l~~~l--~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~ 97 (219)
T 3jwg_A 20 TVVAVL--KSVNAKKVIDLGCGEGNLLSLLLKDKSFEQITGVDVSYSVLERAKDRLKIDRLPEMQRKRISLFQSSLVYRD 97 (219)
T ss_dssp HHHHHH--HHTTCCEEEEETCTTCHHHHHHHTSTTCCEEEEEESCHHHHHHHHHHHTGGGSCHHHHTTEEEEECCSSSCC
T ss_pred HHHHHH--hhcCCCEEEEecCCCCHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHhhccccccCcceEEEeCcccccc
Confidence 344444 334567999999 578889999998 666665542 1 2899999998542
Q ss_pred CC--CcceEeccccchhhhHHhhhhhhhhcCCCccchhhhhhcccccceeeeeeccCChHHHHHHHHHHHHHhccCC---
Q 036440 71 IP--PVCMIPLRLGYSHIKIMIAFFIRLVVGRGRLHIFSWLNFMKRVINMQIIIHVFGDEESVKILKICREAITSKA--- 145 (181)
Q Consensus 71 ~P--~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~iLHdw~D~~~~~iL~~~~~a~~~~g--- 145 (181)
.+ ..|++ ++..++|.+++++..++|++++..++|||
T Consensus 98 ~~~~~fD~V---------------------------------------~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~~i 138 (219)
T 3jwg_A 98 KRFSGYDAA---------------------------------------TVIEVIEHLDENRLQAFEKVLFEFTRPQTVIV 138 (219)
T ss_dssp GGGTTCSEE---------------------------------------EEESCGGGCCHHHHHHHHHHHHTTTCCSEEEE
T ss_pred cccCCCCEE---------------------------------------EEHHHHHhCCHHHHHHHHHHHHHhhCCCEEEE
Confidence 22 26888 88999999999999999999999999998
Q ss_pred -------------------------ccCCHHHHH----HHHHhCCCeEEE
Q 036440 146 -------------------------KLSTEKELE----SLFVEVHFHHYK 166 (181)
Q Consensus 146 -------------------------~eRt~~E~~----~Ll~~aGf~~~~ 166 (181)
...|.+|++ ++++++||++.-
T Consensus 139 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~Gf~v~~ 188 (219)
T 3jwg_A 139 STPNKEYNFHYGNLFEGNLRHRDHRFEWTRKEFQTWAVKVAEKYGYSVRF 188 (219)
T ss_dssp EEEBGGGGGCCCCT-----GGGCCTTSBCHHHHHHHHHHHHHHHTEEEEE
T ss_pred EccchhhhhhhcccCcccccccCceeeecHHHHHHHHHHHHHHCCcEEEE
Confidence 124899999 889999997643
|
| >3bus_A REBM, methyltransferase; rebeccamycin synthesis; HET: SAH; 2.65A {Lechevalieria aerocolonigenes} | Back alignment and structure |
|---|
Probab=98.52 E-value=1e-06 Score=71.21 Aligned_cols=112 Identities=14% Similarity=0.078 Sum_probs=76.3
Q ss_pred HHHHHHhhhhhcCCCeEEEec------------CCCCceEEEeec-hhhhhhhc-------cCCCceEEecCCCC-CCCC
Q 036440 15 SLALKYCKQIFERLGSLVDVG------------AFPCVKCTEFDQ-PHVVANLL-------DTNNLKYLADDFFQ-SIPP 73 (181)
Q Consensus 15 ~~~l~~~~~d~~~~~~lvDvG------------~~P~l~~~~~Dl-P~Vv~~a~-------~~~ri~~~~gDff~-~~P~ 73 (181)
..+++.. +...-.+||||| ++ +.+.+.+|+ |..++.+. ..++++++.+|+.+ ++|.
T Consensus 51 ~~l~~~~--~~~~~~~vLDiGcG~G~~~~~l~~~~-~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~ 127 (273)
T 3bus_A 51 DEMIALL--DVRSGDRVLDVGCGIGKPAVRLATAR-DVRVTGISISRPQVNQANARATAAGLANRVTFSYADAMDLPFED 127 (273)
T ss_dssp HHHHHHS--CCCTTCEEEEESCTTSHHHHHHHHHS-CCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTSCCSCT
T ss_pred HHHHHhc--CCCCCCEEEEeCCCCCHHHHHHHHhc-CCEEEEEeCCHHHHHHHHHHHHhcCCCcceEEEECccccCCCCC
Confidence 3444555 455667999999 34 678999998 56655443 25689999999986 3443
Q ss_pred --cceEeccccchhhhHHhhhhhhhhcCCCccchhhhhhcccccceeeeeeccCChHHHHHHHHHHHHHhccCC------
Q 036440 74 --VCMIPLRLGYSHIKIMIAFFIRLVVGRGRLHIFSWLNFMKRVINMQIIIHVFGDEESVKILKICREAITSKA------ 145 (181)
Q Consensus 74 --~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~iLHdw~D~~~~~iL~~~~~a~~~~g------ 145 (181)
.|++ +...++|.++|. .++|++++..++|||
T Consensus 128 ~~fD~v---------------------------------------~~~~~l~~~~~~--~~~l~~~~~~L~pgG~l~i~~ 166 (273)
T 3bus_A 128 ASFDAV---------------------------------------WALESLHHMPDR--GRALREMARVLRPGGTVAIAD 166 (273)
T ss_dssp TCEEEE---------------------------------------EEESCTTTSSCH--HHHHHHHHTTEEEEEEEEEEE
T ss_pred CCccEE---------------------------------------EEechhhhCCCH--HHHHHHHHHHcCCCeEEEEEE
Confidence 5888 444444444333 344555555555444
Q ss_pred -------------------------ccCCHHHHHHHHHhCCCeEEEEEEc
Q 036440 146 -------------------------KLSTEKELESLFVEVHFHHYKITPL 170 (181)
Q Consensus 146 -------------------------~eRt~~E~~~Ll~~aGf~~~~i~~~ 170 (181)
...|.+++.++++++||+++++...
T Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~~~~~~~ 216 (273)
T 3bus_A 167 FVLLAPVEGAKKEAVDAFRAGGGVLSLGGIDEYESDVRQAELVVTSTVDI 216 (273)
T ss_dssp EEESSCCCHHHHHHHHHHHHHHTCCCCCCHHHHHHHHHHTTCEEEEEEEC
T ss_pred eeccCCCChhHHHHHHHHHhhcCccCCCCHHHHHHHHHHcCCeEEEEEEC
Confidence 5678899999999999999988764
|
| >2p7i_A Hypothetical protein; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; 1.74A {Pectobacterium atrosepticum SCRI1043} SCOP: c.66.1.41 PDB: 2p7h_A | Back alignment and structure |
|---|
Probab=98.51 E-value=1.1e-06 Score=68.91 Aligned_cols=102 Identities=16% Similarity=0.207 Sum_probs=78.4
Q ss_pred cCCCeEEEec------------CCCCceEEEeec-hhhhhhhcc--CCCceEEecCCCCCCCC--cceEeccccchhhhH
Q 036440 26 ERLGSLVDVG------------AFPCVKCTEFDQ-PHVVANLLD--TNNLKYLADDFFQSIPP--VCMIPLRLGYSHIKI 88 (181)
Q Consensus 26 ~~~~~lvDvG------------~~P~l~~~~~Dl-P~Vv~~a~~--~~ri~~~~gDff~~~P~--~d~~~~~~~~~~~~~ 88 (181)
..-.+||||| .+| +.+.+|+ |..++.+.. ..+++++.+|+.+..|. .|++
T Consensus 41 ~~~~~vLDiGcG~G~~~~~l~~~~~--~v~gvD~s~~~~~~a~~~~~~~v~~~~~d~~~~~~~~~fD~v----------- 107 (250)
T 2p7i_A 41 FRPGNLLELGSFKGDFTSRLQEHFN--DITCVEASEEAISHAQGRLKDGITYIHSRFEDAQLPRRYDNI----------- 107 (250)
T ss_dssp CCSSCEEEESCTTSHHHHHHTTTCS--CEEEEESCHHHHHHHHHHSCSCEEEEESCGGGCCCSSCEEEE-----------
T ss_pred cCCCcEEEECCCCCHHHHHHHHhCC--cEEEEeCCHHHHHHHHHhhhCCeEEEEccHHHcCcCCcccEE-----------
Confidence 3456899999 444 6778887 456665543 22899999999876443 5888
Q ss_pred HhhhhhhhhcCCCccchhhhhhcccccceeeeeeccCChHHHHHHHHHHH-HHhccCC----------------------
Q 036440 89 MIAFFIRLVVGRGRLHIFSWLNFMKRVINMQIIIHVFGDEESVKILKICR-EAITSKA---------------------- 145 (181)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~iLHdw~D~~~~~iL~~~~-~a~~~~g---------------------- 145 (181)
++..+||.++|. .++|++++ ..++|||
T Consensus 108 ----------------------------~~~~~l~~~~~~--~~~l~~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~ 157 (250)
T 2p7i_A 108 ----------------------------VLTHVLEHIDDP--VALLKRINDDWLAEGGRLFLVCPNANAVSRQIAVKMGI 157 (250)
T ss_dssp ----------------------------EEESCGGGCSSH--HHHHHHHHHTTEEEEEEEEEEEECTTCHHHHHHHHTTS
T ss_pred ----------------------------EEhhHHHhhcCH--HHHHHHHHHHhcCCCCEEEEEcCChHHHHHHHHHHcCc
Confidence 888889888765 47899999 8999888
Q ss_pred -----------------ccCCHHHHHHHHHhCCCeEEEEEEc
Q 036440 146 -----------------KLSTEKELESLFVEVHFHHYKITPL 170 (181)
Q Consensus 146 -----------------~eRt~~E~~~Ll~~aGf~~~~i~~~ 170 (181)
+..|.++++++|+++||+++++...
T Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~~~ 199 (250)
T 2p7i_A 158 ISHNSAVTEAEFAHGHRCTYALDTLERDASRAGLQVTYRSGI 199 (250)
T ss_dssp SSSTTCCCHHHHHTTCCCCCCHHHHHHHHHHTTCEEEEEEEE
T ss_pred cccchhcccccccccccccCCHHHHHHHHHHCCCeEEEEeee
Confidence 1258899999999999999988643
|
| >3f4k_A Putative methyltransferase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacteroides thetaiotaomicron} PDB: 3t0i_A* 3svz_A* 3sxj_A* | Back alignment and structure |
|---|
Probab=98.51 E-value=6.3e-07 Score=71.62 Aligned_cols=104 Identities=11% Similarity=0.055 Sum_probs=79.9
Q ss_pred hcCCCeEEEec------------CCCCceEEEeec-hhhhhhhc-------cCCCceEEecCCCC-CCCC--cceEeccc
Q 036440 25 FERLGSLVDVG------------AFPCVKCTEFDQ-PHVVANLL-------DTNNLKYLADDFFQ-SIPP--VCMIPLRL 81 (181)
Q Consensus 25 ~~~~~~lvDvG------------~~P~l~~~~~Dl-P~Vv~~a~-------~~~ri~~~~gDff~-~~P~--~d~~~~~~ 81 (181)
...-.+|||+| .+|+ +.+.+|+ |..++.+. ..+|++++.+|+.+ ++|. .|++
T Consensus 44 ~~~~~~vLDiG~G~G~~~~~l~~~~~~-~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v---- 118 (257)
T 3f4k_A 44 LTDDAKIADIGCGTGGQTLFLADYVKG-QITGIDLFPDFIEIFNENAVKANCADRVKGITGSMDNLPFQNEELDLI---- 118 (257)
T ss_dssp CCTTCEEEEETCTTSHHHHHHHHHCCS-EEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTSCSSCTTCEEEE----
T ss_pred CCCCCeEEEeCCCCCHHHHHHHHhCCC-eEEEEECCHHHHHHHHHHHHHcCCCCceEEEECChhhCCCCCCCEEEE----
Confidence 34456999999 5675 8999998 66666543 25689999999964 2332 5888
Q ss_pred cchhhhHHhhhhhhhhcCCCccchhhhhhcccccceeeeeeccCChHHHHHHHHHHHHHhccCC----------------
Q 036440 82 GYSHIKIMIAFFIRLVVGRGRLHIFSWLNFMKRVINMQIIIHVFGDEESVKILKICREAITSKA---------------- 145 (181)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~iLHdw~D~~~~~iL~~~~~a~~~~g---------------- 145 (181)
+...++|.++ -.++|++++..++|||
T Consensus 119 -----------------------------------~~~~~l~~~~---~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~ 160 (257)
T 3f4k_A 119 -----------------------------------WSEGAIYNIG---FERGMNEWSKYLKKGGFIAVSEASWFTSERPA 160 (257)
T ss_dssp -----------------------------------EEESCSCCCC---HHHHHHHHHTTEEEEEEEEEEEEEESSSCCCH
T ss_pred -----------------------------------EecChHhhcC---HHHHHHHHHHHcCCCcEEEEEEeeccCCCChH
Confidence 7778888773 3568888888899888
Q ss_pred -----------ccCCHHHHHHHHHhCCCeEEEEEEcC
Q 036440 146 -----------KLSTEKELESLFVEVHFHHYKITPLF 171 (181)
Q Consensus 146 -----------~eRt~~E~~~Ll~~aGf~~~~i~~~~ 171 (181)
...|.+++.++|+++||+++.+...+
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~v~~~~~~ 197 (257)
T 3f4k_A 161 EIEDFWMDAYPEISVIPTCIDKMERAGYTPTAHFILP 197 (257)
T ss_dssp HHHHHHHHHCTTCCBHHHHHHHHHHTTEEEEEEEECC
T ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHCCCeEEEEEECC
Confidence 24588999999999999999987654
|
| >3jwh_A HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena variabilis} PDB: 3jwj_A | Back alignment and structure |
|---|
Probab=98.50 E-value=2.1e-06 Score=67.43 Aligned_cols=111 Identities=8% Similarity=-0.049 Sum_probs=86.4
Q ss_pred HHHHHhhhhhcCCCeEEEec------------CCCCceEEEeec-hhhhhhhcc-----------CCCceEEecCCCCC-
Q 036440 16 LALKYCKQIFERLGSLVDVG------------AFPCVKCTEFDQ-PHVVANLLD-----------TNNLKYLADDFFQS- 70 (181)
Q Consensus 16 ~~l~~~~~d~~~~~~lvDvG------------~~P~l~~~~~Dl-P~Vv~~a~~-----------~~ri~~~~gDff~~- 70 (181)
.+++.. ....-.+|||+| .+|..+.+.+|+ |..++.+.. .++++++.+|+...
T Consensus 20 ~l~~~l--~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~ 97 (217)
T 3jwh_A 20 GVVAAL--KQSNARRVIDLGCGQGNLLKILLKDSFFEQITGVDVSYRSLEIAQERLDRLRLPRNQWERLQLIQGALTYQD 97 (217)
T ss_dssp HHHHHH--HHTTCCEEEEETCTTCHHHHHHHHCTTCSEEEEEESCHHHHHHHHHHHTTCCCCHHHHTTEEEEECCTTSCC
T ss_pred HHHHHH--HhcCCCEEEEeCCCCCHHHHHHHhhCCCCEEEEEECCHHHHHHHHHHHHHhcCCcccCcceEEEeCCccccc
Confidence 344444 344567999999 578889999998 666665542 12899999998532
Q ss_pred CC--CcceEeccccchhhhHHhhhhhhhhcCCCccchhhhhhcccccceeeeeeccCChHHHHHHHHHHHHHhccCC---
Q 036440 71 IP--PVCMIPLRLGYSHIKIMIAFFIRLVVGRGRLHIFSWLNFMKRVINMQIIIHVFGDEESVKILKICREAITSKA--- 145 (181)
Q Consensus 71 ~P--~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~iLHdw~D~~~~~iL~~~~~a~~~~g--- 145 (181)
.+ ..|++ ++..++|.+++++..++|++++..++|||
T Consensus 98 ~~~~~fD~v---------------------------------------~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~li 138 (217)
T 3jwh_A 98 KRFHGYDAA---------------------------------------TVIEVIEHLDLSRLGAFERVLFEFAQPKIVIV 138 (217)
T ss_dssp GGGCSCSEE---------------------------------------EEESCGGGCCHHHHHHHHHHHHTTTCCSEEEE
T ss_pred ccCCCcCEE---------------------------------------eeHHHHHcCCHHHHHHHHHHHHHHcCCCEEEE
Confidence 22 36888 88999999999999999999999999999
Q ss_pred -------------------------ccCCHHHHH----HHHHhCCCeEEEE
Q 036440 146 -------------------------KLSTEKELE----SLFVEVHFHHYKI 167 (181)
Q Consensus 146 -------------------------~eRt~~E~~----~Ll~~aGf~~~~i 167 (181)
.+.|.+|++ ++++++||++.-.
T Consensus 139 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~Gf~v~~~ 189 (217)
T 3jwh_A 139 TTPNIEYNVKFANLPAGKLRHKDHRFEWTRSQFQNWANKITERFAYNVQFQ 189 (217)
T ss_dssp EEEBHHHHHHTC-----------CCSCBCHHHHHHHHHHHHHHSSEEEEEC
T ss_pred EccCcccchhhcccccccccccccccccCHHHHHHHHHHHHHHcCceEEEE
Confidence 224899999 9999999986543
|
| >3l8d_A Methyltransferase; structural genomics, PSI, nysgrc, protein structure initiative, NEW YORK SGX research center for STRU genomics; 1.70A {Bacillus thuringiensis} | Back alignment and structure |
|---|
Probab=98.49 E-value=1.4e-06 Score=68.92 Aligned_cols=105 Identities=14% Similarity=0.128 Sum_probs=83.0
Q ss_pred hcCCCeEEEec----------CCCCceEEEeec-hhhhhhhcc---CCCceEEecCCCCC-CCC--cceEeccccchhhh
Q 036440 25 FERLGSLVDVG----------AFPCVKCTEFDQ-PHVVANLLD---TNNLKYLADDFFQS-IPP--VCMIPLRLGYSHIK 87 (181)
Q Consensus 25 ~~~~~~lvDvG----------~~P~l~~~~~Dl-P~Vv~~a~~---~~ri~~~~gDff~~-~P~--~d~~~~~~~~~~~~ 87 (181)
...-.+|||+| +--+.+.+.+|. |..++.+.. ..+++++.+|+.+. +|. .|++
T Consensus 51 ~~~~~~vLDiG~G~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~d~~~~~~~~~~fD~v---------- 120 (242)
T 3l8d_A 51 VKKEAEVLDVGCGDGYGTYKLSRTGYKAVGVDISEVMIQKGKERGEGPDLSFIKGDLSSLPFENEQFEAI---------- 120 (242)
T ss_dssp SCTTCEEEEETCTTSHHHHHHHHTTCEEEEEESCHHHHHHHHTTTCBTTEEEEECBTTBCSSCTTCEEEE----------
T ss_pred cCCCCeEEEEcCCCCHHHHHHHHcCCeEEEEECCHHHHHHHHhhcccCCceEEEcchhcCCCCCCCccEE----------
Confidence 44567999999 111568899998 566666653 57899999999863 443 5888
Q ss_pred HHhhhhhhhhcCCCccchhhhhhcccccceeeeeeccCChHHHHHHHHHHHHHhccCC----------------------
Q 036440 88 IMIAFFIRLVVGRGRLHIFSWLNFMKRVINMQIIIHVFGDEESVKILKICREAITSKA---------------------- 145 (181)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~iLHdw~D~~~~~iL~~~~~a~~~~g---------------------- 145 (181)
+...++|.++|.. ++|+.++..++|||
T Consensus 121 -----------------------------~~~~~l~~~~~~~--~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~ 169 (242)
T 3l8d_A 121 -----------------------------MAINSLEWTEEPL--RALNEIKRVLKSDGYACIAILGPTAKPRENSYPRLY 169 (242)
T ss_dssp -----------------------------EEESCTTSSSCHH--HHHHHHHHHEEEEEEEEEEEECTTCGGGGGGGGGGG
T ss_pred -----------------------------EEcChHhhccCHH--HHHHHHHHHhCCCeEEEEEEcCCcchhhhhhhhhhc
Confidence 8889999886654 78999999999999
Q ss_pred ------ccCCHHHHHHHHHhCCCeEEEEEEc
Q 036440 146 ------KLSTEKELESLFVEVHFHHYKITPL 170 (181)
Q Consensus 146 ------~eRt~~E~~~Ll~~aGf~~~~i~~~ 170 (181)
...|.++++.+++++||+++++.++
T Consensus 170 ~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~~~ 200 (242)
T 3l8d_A 170 GKDVVCNTMMPWEFEQLVKEQGFKVVDGIGV 200 (242)
T ss_dssp TCCCSSCCCCHHHHHHHHHHTTEEEEEEEEE
T ss_pred cccccccCCCHHHHHHHHHHcCCEEEEeecc
Confidence 3378899999999999999988754
|
| >3i9f_A Putative type 11 methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.50A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=98.49 E-value=3.7e-07 Score=68.80 Aligned_cols=116 Identities=17% Similarity=0.137 Sum_probs=90.0
Q ss_pred HHHHHHhhhhhcCCCeEEEec------------CCCCceEEEeec-hhhhhhhcc-CCCceEEecCCCCCCCC--cceEe
Q 036440 15 SLALKYCKQIFERLGSLVDVG------------AFPCVKCTEFDQ-PHVVANLLD-TNNLKYLADDFFQSIPP--VCMIP 78 (181)
Q Consensus 15 ~~~l~~~~~d~~~~~~lvDvG------------~~P~l~~~~~Dl-P~Vv~~a~~-~~ri~~~~gDff~~~P~--~d~~~ 78 (181)
..+++.+ +...-.+|||+| .+ . +.+.+|+ |..++.+.. .+++++..+| .++|. .|++
T Consensus 7 ~~~~~~~--~~~~~~~vLDiG~G~G~~~~~l~~~~-~-~v~~vD~s~~~~~~a~~~~~~v~~~~~d--~~~~~~~~D~v- 79 (170)
T 3i9f_A 7 EEYLPNI--FEGKKGVIVDYGCGNGFYCKYLLEFA-T-KLYCIDINVIALKEVKEKFDSVITLSDP--KEIPDNSVDFI- 79 (170)
T ss_dssp TTTHHHH--HSSCCEEEEEETCTTCTTHHHHHTTE-E-EEEEECSCHHHHHHHHHHCTTSEEESSG--GGSCTTCEEEE-
T ss_pred HHHHHhc--CcCCCCeEEEECCCCCHHHHHHHhhc-C-eEEEEeCCHHHHHHHHHhCCCcEEEeCC--CCCCCCceEEE-
Confidence 3456666 567778999999 33 2 7899998 666666654 6799999999 44443 6888
Q ss_pred ccccchhhhHHhhhhhhhhcCCCccchhhhhhcccccceeeeeeccCChHHHHHHHHHHHHHhccCC-------------
Q 036440 79 LRLGYSHIKIMIAFFIRLVVGRGRLHIFSWLNFMKRVINMQIIIHVFGDEESVKILKICREAITSKA------------- 145 (181)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~iLHdw~D~~~~~iL~~~~~a~~~~g------------- 145 (181)
++..++|.++|. .++|++++..++|+|
T Consensus 80 --------------------------------------~~~~~l~~~~~~--~~~l~~~~~~L~pgG~l~~~~~~~~~~~ 119 (170)
T 3i9f_A 80 --------------------------------------LFANSFHDMDDK--QHVISEVKRILKDDGRVIIIDWRKENTG 119 (170)
T ss_dssp --------------------------------------EEESCSTTCSCH--HHHHHHHHHHEEEEEEEEEEEECSSCCS
T ss_pred --------------------------------------EEccchhcccCH--HHHHHHHHHhcCCCCEEEEEEcCccccc
Confidence 889999998754 579999999999999
Q ss_pred ------ccCCHHHHHHHHHhCCCeEEEEEEcCCCCeEEEE
Q 036440 146 ------KLSTEKELESLFVEVHFHHYKITPLFGLPSLIEV 179 (181)
Q Consensus 146 ------~eRt~~E~~~Ll~~aGf~~~~i~~~~~~~~viE~ 179 (181)
...|.++++++|+ ||+++++.........+.+
T Consensus 120 ~~~~~~~~~~~~~~~~~l~--Gf~~~~~~~~~~~~~~l~~ 157 (170)
T 3i9f_A 120 IGPPLSIRMDEKDYMGWFS--NFVVEKRFNPTPYHFGLVL 157 (170)
T ss_dssp SSSCGGGCCCHHHHHHHTT--TEEEEEEECSSTTEEEEEE
T ss_pred cCchHhhhcCHHHHHHHHh--CcEEEEccCCCCceEEEEE
Confidence 3468999999999 9999999888765544443
|
| >3cgg_A SAM-dependent methyltransferase; NP_600671.1, methyltransferase domain, structural genomics; HET: NHE CIT; 2.00A {Corynebacterium glutamicum atcc 13032} | Back alignment and structure |
|---|
Probab=98.48 E-value=2.3e-06 Score=64.58 Aligned_cols=106 Identities=10% Similarity=0.070 Sum_probs=85.4
Q ss_pred hcCCCeEEEec-----------CCCCceEEEeec-hhhhhhhcc-CCCceEEecCCCC-CCCC--cceEeccccchhhhH
Q 036440 25 FERLGSLVDVG-----------AFPCVKCTEFDQ-PHVVANLLD-TNNLKYLADDFFQ-SIPP--VCMIPLRLGYSHIKI 88 (181)
Q Consensus 25 ~~~~~~lvDvG-----------~~P~l~~~~~Dl-P~Vv~~a~~-~~ri~~~~gDff~-~~P~--~d~~~~~~~~~~~~~ 88 (181)
...-.+|+|+| +. +.+.+.+|. |..++.+.. ..+++++.+|+.+ ++|. .|++
T Consensus 44 ~~~~~~vLdiG~G~G~~~~~l~~~-~~~v~~~D~~~~~~~~a~~~~~~~~~~~~d~~~~~~~~~~~D~i----------- 111 (195)
T 3cgg_A 44 APRGAKILDAGCGQGRIGGYLSKQ-GHDVLGTDLDPILIDYAKQDFPEARWVVGDLSVDQISETDFDLI----------- 111 (195)
T ss_dssp SCTTCEEEEETCTTTHHHHHHHHT-TCEEEEEESCHHHHHHHHHHCTTSEEEECCTTTSCCCCCCEEEE-----------
T ss_pred ccCCCeEEEECCCCCHHHHHHHHC-CCcEEEEcCCHHHHHHHHHhCCCCcEEEcccccCCCCCCceeEE-----------
Confidence 44667999999 22 568899998 666666653 4679999999986 3443 5887
Q ss_pred HhhhhhhhhcCCCccchhhhhhcccccceee-eeeccCChHHHHHHHHHHHHHhccCC---------ccCCHHHHHHHHH
Q 036440 89 MIAFFIRLVVGRGRLHIFSWLNFMKRVINMQ-IIIHVFGDEESVKILKICREAITSKA---------KLSTEKELESLFV 158 (181)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~iLHdw~D~~~~~iL~~~~~a~~~~g---------~eRt~~E~~~Ll~ 158 (181)
++. .++|..+++...++|+.++..++|+| +..+.+++..+++
T Consensus 112 ----------------------------~~~~~~~~~~~~~~~~~~l~~~~~~l~~~G~l~~~~~~~~~~~~~~~~~~l~ 163 (195)
T 3cgg_A 112 ----------------------------VSAGNVMGFLAEDGREPALANIHRALGADGRAVIGFGAGRGWVFGDFLEVAE 163 (195)
T ss_dssp ----------------------------EECCCCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEETTSSCCHHHHHHHHH
T ss_pred ----------------------------EECCcHHhhcChHHHHHHHHHHHHHhCCCCEEEEEeCCCCCcCHHHHHHHHH
Confidence 666 78888888889999999999999999 4578999999999
Q ss_pred hCCCeEEEEEEc
Q 036440 159 EVHFHHYKITPL 170 (181)
Q Consensus 159 ~aGf~~~~i~~~ 170 (181)
++||+++++...
T Consensus 164 ~~Gf~~~~~~~~ 175 (195)
T 3cgg_A 164 RVGLELENAFES 175 (195)
T ss_dssp HHTEEEEEEESS
T ss_pred HcCCEEeeeecc
Confidence 999999988644
|
| >3kkz_A Uncharacterized protein Q5LES9; putative methyltransferase, BFR250, NESG, structural genomics, PSI-2; HET: SAM; 1.68A {Bacteroides fragilis nctc 9343} PDB: 3e7p_A 3t7s_A* 3t7r_A* 3t7t_A* | Back alignment and structure |
|---|
Probab=98.47 E-value=8.3e-07 Score=72.02 Aligned_cols=105 Identities=11% Similarity=0.047 Sum_probs=79.6
Q ss_pred hcCCCeEEEec-----------CCCCceEEEeec-hhhhhhhc-------cCCCceEEecCCCC-CCCC--cceEecccc
Q 036440 25 FERLGSLVDVG-----------AFPCVKCTEFDQ-PHVVANLL-------DTNNLKYLADDFFQ-SIPP--VCMIPLRLG 82 (181)
Q Consensus 25 ~~~~~~lvDvG-----------~~P~l~~~~~Dl-P~Vv~~a~-------~~~ri~~~~gDff~-~~P~--~d~~~~~~~ 82 (181)
...-.+||||| +.|..+.+.+|+ |..++.+. ..++++++.+|+.+ ++|. .|++
T Consensus 44 ~~~~~~vLDiGcG~G~~~~~la~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~i----- 118 (267)
T 3kkz_A 44 LTEKSLIADIGCGTGGQTMVLAGHVTGQVTGLDFLSGFIDIFNRNARQSGLQNRVTGIVGSMDDLPFRNEELDLI----- 118 (267)
T ss_dssp CCTTCEEEEETCTTCHHHHHHHTTCSSEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTSCCCCTTCEEEE-----
T ss_pred CCCCCEEEEeCCCCCHHHHHHHhccCCEEEEEeCCHHHHHHHHHHHHHcCCCcCcEEEEcChhhCCCCCCCEEEE-----
Confidence 44567999999 558889999998 66666553 24789999999975 2333 5888
Q ss_pred chhhhHHhhhhhhhhcCCCccchhhhhhcccccceeeeeeccCChHHHHHHHHHHHHHhccCC-----------------
Q 036440 83 YSHIKIMIAFFIRLVVGRGRLHIFSWLNFMKRVINMQIIIHVFGDEESVKILKICREAITSKA----------------- 145 (181)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~iLHdw~D~~~~~iL~~~~~a~~~~g----------------- 145 (181)
+...++|.++ -.++|++++..++|||
T Consensus 119 ----------------------------------~~~~~~~~~~---~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~ 161 (267)
T 3kkz_A 119 ----------------------------------WSEGAIYNIG---FERGLNEWRKYLKKGGYLAVSECSWFTDERPAE 161 (267)
T ss_dssp ----------------------------------EESSCGGGTC---HHHHHHHHGGGEEEEEEEEEEEEEESSSCCCHH
T ss_pred ----------------------------------EEcCCceecC---HHHHHHHHHHHcCCCCEEEEEEeeecCCCChHH
Confidence 6666777662 3456777777777777
Q ss_pred ----------ccCCHHHHHHHHHhCCCeEEEEEEcC
Q 036440 146 ----------KLSTEKELESLFVEVHFHHYKITPLF 171 (181)
Q Consensus 146 ----------~eRt~~E~~~Ll~~aGf~~~~i~~~~ 171 (181)
...|.+++.++|+++||+++.+..++
T Consensus 162 ~~~~~~~~~~~~~~~~~~~~~l~~aGf~~v~~~~~~ 197 (267)
T 3kkz_A 162 INDFWMDAYPEIDTIPNQVAKIHKAGYLPVATFILP 197 (267)
T ss_dssp HHHHHHHHCTTCEEHHHHHHHHHHTTEEEEEEEECC
T ss_pred HHHHHHHhCCCCCCHHHHHHHHHHCCCEEEEEEECC
Confidence 23478999999999999999988765
|
| >1nkv_A Hypothetical protein YJHP; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.90A {Escherichia coli} SCOP: c.66.1.21 | Back alignment and structure |
|---|
Probab=98.47 E-value=7.9e-07 Score=71.02 Aligned_cols=111 Identities=9% Similarity=0.085 Sum_probs=83.5
Q ss_pred HHHHHHhhhhhcCCCeEEEec------------CCCCceEEEeec-hhhhhhhc-------cCCCceEEecCCCCCCC-C
Q 036440 15 SLALKYCKQIFERLGSLVDVG------------AFPCVKCTEFDQ-PHVVANLL-------DTNNLKYLADDFFQSIP-P 73 (181)
Q Consensus 15 ~~~l~~~~~d~~~~~~lvDvG------------~~P~l~~~~~Dl-P~Vv~~a~-------~~~ri~~~~gDff~~~P-~ 73 (181)
..+++.. ....-.+||||| .+ +.+++.+|+ |..++.+. ..++++++.+|+.+..+ .
T Consensus 26 ~~l~~~~--~~~~~~~VLDiGcG~G~~~~~la~~~-~~~v~gvD~s~~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~ 102 (256)
T 1nkv_A 26 ATLGRVL--RMKPGTRILDLGSGSGEMLCTWARDH-GITGTGIDMSSLFTAQAKRRAEELGVSERVHFIHNDAAGYVANE 102 (256)
T ss_dssp HHHHHHT--CCCTTCEEEEETCTTCHHHHHHHHHT-CCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCCTTCCCSS
T ss_pred HHHHHhc--CCCCCCEEEEECCCCCHHHHHHHHhc-CCeEEEEeCCHHHHHHHHHHHHhcCCCcceEEEECChHhCCcCC
Confidence 3445555 456667999999 34 568899998 66666553 24689999999986433 2
Q ss_pred -cceEeccccchhhhHHhhhhhhhhcCCCccchhhhhhcccccceeeeeeccCChHHHHHHHHHHHHHhccCC-------
Q 036440 74 -VCMIPLRLGYSHIKIMIAFFIRLVVGRGRLHIFSWLNFMKRVINMQIIIHVFGDEESVKILKICREAITSKA------- 145 (181)
Q Consensus 74 -~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~iLHdw~D~~~~~iL~~~~~a~~~~g------- 145 (181)
.|++ +...++|.++| ..++|++++..++|||
T Consensus 103 ~fD~V---------------------------------------~~~~~~~~~~~--~~~~l~~~~r~LkpgG~l~~~~~ 141 (256)
T 1nkv_A 103 KCDVA---------------------------------------ACVGATWIAGG--FAGAEELLAQSLKPGGIMLIGEP 141 (256)
T ss_dssp CEEEE---------------------------------------EEESCGGGTSS--SHHHHHHHTTSEEEEEEEEEEEE
T ss_pred CCCEE---------------------------------------EECCChHhcCC--HHHHHHHHHHHcCCCeEEEEecC
Confidence 5888 77788888875 4668889999999888
Q ss_pred ---------------------ccCCHHHHHHHHHhCCCeEEEEEE
Q 036440 146 ---------------------KLSTEKELESLFVEVHFHHYKITP 169 (181)
Q Consensus 146 ---------------------~eRt~~E~~~Ll~~aGf~~~~i~~ 169 (181)
...|.+++.++|+++||+.+++..
T Consensus 142 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~~~~~~ 186 (256)
T 1nkv_A 142 YWRQLPATEEIAQACGVSSTSDFLTLPGLVGAFDDLGYDVVEMVL 186 (256)
T ss_dssp EETTCCSSHHHHHTTTCSCGGGSCCHHHHHHHHHTTTBCCCEEEE
T ss_pred cccCCCChHHHHHHHhcccccccCCHHHHHHHHHHCCCeeEEEEe
Confidence 234779999999999999987754
|
| >3ege_A Putative methyltransferase from antibiotic biosyn pathway; YP_324569.1, putative methyltransferase from antibiotic BIOS pathway; 2.40A {Anabaena variabilis atcc 29413} | Back alignment and structure |
|---|
Probab=98.46 E-value=1.3e-06 Score=71.03 Aligned_cols=111 Identities=13% Similarity=0.155 Sum_probs=85.5
Q ss_pred HHHHHHhhhhhcCCCeEEEec----------CCCCceEEEeec-hhhhhhhccCCCceEEecCCCC-CCCC--cceEecc
Q 036440 15 SLALKYCKQIFERLGSLVDVG----------AFPCVKCTEFDQ-PHVVANLLDTNNLKYLADDFFQ-SIPP--VCMIPLR 80 (181)
Q Consensus 15 ~~~l~~~~~d~~~~~~lvDvG----------~~P~l~~~~~Dl-P~Vv~~a~~~~ri~~~~gDff~-~~P~--~d~~~~~ 80 (181)
..+++.. ....-.+||||| +-|+.+.+.+|+ |..++.+....+++++.+|+.+ ++|. .|++
T Consensus 24 ~~l~~~~--~~~~~~~vLDiGcG~G~~~~~l~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~d~~~~~~~~~~fD~v--- 98 (261)
T 3ege_A 24 NAIINLL--NLPKGSVIADIGAGTGGYSVALANQGLFVYAVEPSIVMRQQAVVHPQVEWFTGYAENLALPDKSVDGV--- 98 (261)
T ss_dssp HHHHHHH--CCCTTCEEEEETCTTSHHHHHHHTTTCEEEEECSCHHHHHSSCCCTTEEEECCCTTSCCSCTTCBSEE---
T ss_pred HHHHHHh--CCCCCCEEEEEcCcccHHHHHHHhCCCEEEEEeCCHHHHHHHHhccCCEEEECchhhCCCCCCCEeEE---
Confidence 3444555 346678999999 448899999998 5566666655699999999975 3343 5888
Q ss_pred ccchhhhHHhhhhhhhhcCCCccchhhhhhcccccceeeeeeccCChHHHHHHHHHHHHHhccCC---------------
Q 036440 81 LGYSHIKIMIAFFIRLVVGRGRLHIFSWLNFMKRVINMQIIIHVFGDEESVKILKICREAITSKA--------------- 145 (181)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~iLHdw~D~~~~~iL~~~~~a~~~~g--------------- 145 (181)
+...++|.+.|- .++|++++..++ ||
T Consensus 99 ------------------------------------~~~~~l~~~~~~--~~~l~~~~~~Lk-gG~~~~~~~~~~~~~~~ 139 (261)
T 3ege_A 99 ------------------------------------ISILAIHHFSHL--EKSFQEMQRIIR-DGTIVLLTFDIRLAQRI 139 (261)
T ss_dssp ------------------------------------EEESCGGGCSSH--HHHHHHHHHHBC-SSCEEEEEECGGGCCCC
T ss_pred ------------------------------------EEcchHhhccCH--HHHHHHHHHHhC-CcEEEEEEcCCchhHHH
Confidence 888889988554 578999999999 88
Q ss_pred ---------------ccCCHHHHHHHHHhCCCeEEEEEEc
Q 036440 146 ---------------KLSTEKELESLFVEVHFHHYKITPL 170 (181)
Q Consensus 146 ---------------~eRt~~E~~~Ll~~aGf~~~~i~~~ 170 (181)
...+.+++. +|++|||+++++.+.
T Consensus 140 ~~~~~~~~~~~~~~~~~~~~~~~~-~l~~aGF~~v~~~~~ 178 (261)
T 3ege_A 140 WLYDYFPFLWEDALRFLPLDEQIN-LLQENTKRRVEAIPF 178 (261)
T ss_dssp GGGGTCHHHHHHHHTSCCHHHHHH-HHHHHHCSEEEEEEC
T ss_pred HHHHHHHHHhhhhhhhCCCHHHHH-HHHHcCCCceeEEEe
Confidence 245677888 999999999888654
|
| >4fsd_A Arsenic methyltransferase; rossmann fold; 1.75A {Cyanidioschyzon SP} PDB: 4fr0_A* 4fs8_A 3p7e_A 3qnh_A 3qhu_A | Back alignment and structure |
|---|
Probab=98.45 E-value=8.7e-07 Score=77.00 Aligned_cols=102 Identities=12% Similarity=0.201 Sum_probs=82.1
Q ss_pred CCCeEEEec------------CC-CCceEEEeec-hhhhhhhccC--------------CCceEEecCCCC-------CC
Q 036440 27 RLGSLVDVG------------AF-PCVKCTEFDQ-PHVVANLLDT--------------NNLKYLADDFFQ-------SI 71 (181)
Q Consensus 27 ~~~~lvDvG------------~~-P~l~~~~~Dl-P~Vv~~a~~~--------------~ri~~~~gDff~-------~~ 71 (181)
.-.+|||+| .+ |..+.+.+|+ |..++.+... ++++++.+|+.+ ++
T Consensus 83 ~~~~VLDlGcG~G~~~~~la~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~g~~~~~~v~~~~~d~~~l~~~~~~~~ 162 (383)
T 4fsd_A 83 EGATVLDLGCGTGRDVYLASKLVGEHGKVIGVDMLDNQLEVARKYVEYHAEKFFGSPSRSNVRFLKGFIENLATAEPEGV 162 (383)
T ss_dssp TTCEEEEESCTTSHHHHHHHHHHTTTCEEEEEECCHHHHHHHHHTHHHHHHHHHSSTTCCCEEEEESCTTCGGGCBSCCC
T ss_pred CCCEEEEecCccCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHhhhhcccccCCCceEEEEccHHHhhhcccCCC
Confidence 446899999 33 8889999999 6666655431 699999999986 45
Q ss_pred CC--cceEeccccchhhhHHhhhhhhhhcCCCccchhhhhhcccccceeeeeeccCChHHHHHHHHHHHHHhccCC----
Q 036440 72 PP--VCMIPLRLGYSHIKIMIAFFIRLVVGRGRLHIFSWLNFMKRVINMQIIIHVFGDEESVKILKICREAITSKA---- 145 (181)
Q Consensus 72 P~--~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~iLHdw~D~~~~~iL~~~~~a~~~~g---- 145 (181)
|. .|++ +...++|.++|. .++|++++..++|||
T Consensus 163 ~~~~fD~V---------------------------------------~~~~~l~~~~d~--~~~l~~~~r~LkpgG~l~i 201 (383)
T 4fsd_A 163 PDSSVDIV---------------------------------------ISNCVCNLSTNK--LALFKEIHRVLRDGGELYF 201 (383)
T ss_dssp CTTCEEEE---------------------------------------EEESCGGGCSCH--HHHHHHHHHHEEEEEEEEE
T ss_pred CCCCEEEE---------------------------------------EEccchhcCCCH--HHHHHHHHHHcCCCCEEEE
Confidence 54 5888 888899988774 589999999999999
Q ss_pred -------------------------ccCCHHHHHHHHHhCCCeEEEEEE
Q 036440 146 -------------------------KLSTEKELESLFVEVHFHHYKITP 169 (181)
Q Consensus 146 -------------------------~eRt~~E~~~Ll~~aGf~~~~i~~ 169 (181)
...+.++|.++|+++||+.+++..
T Consensus 202 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~aGF~~v~~~~ 250 (383)
T 4fsd_A 202 SDVYADRRLSEAAQQDPILYGECLGGALYLEDFRRLVAEAGFRDVRLVS 250 (383)
T ss_dssp EEEEESSCCCHHHHHCHHHHHTTCTTCCBHHHHHHHHHHTTCCCEEEEE
T ss_pred EEeccccccCHhHhhhHHHhhcccccCCCHHHHHHHHHHCCCceEEEEe
Confidence 226779999999999999887653
|
| >3e8s_A Putative SAM dependent methyltransferase; NP_744700.1, structural genomics, joint center for structural genom JCSG; HET: SAH; 2.10A {Pseudomonas putida KT2440} | Back alignment and structure |
|---|
Probab=98.45 E-value=1.2e-06 Score=67.94 Aligned_cols=109 Identities=9% Similarity=0.041 Sum_probs=82.9
Q ss_pred HHHHHhhhhhcCCCeEEEec-----------CCCCceEEEeec-hhhhhhhccCCCceEEecCCCCC-----CCC--cce
Q 036440 16 LALKYCKQIFERLGSLVDVG-----------AFPCVKCTEFDQ-PHVVANLLDTNNLKYLADDFFQS-----IPP--VCM 76 (181)
Q Consensus 16 ~~l~~~~~d~~~~~~lvDvG-----------~~P~l~~~~~Dl-P~Vv~~a~~~~ri~~~~gDff~~-----~P~--~d~ 76 (181)
.+++.. ....-.+|||+| .. +.+.+.+|+ |..++.+....++++..+|+.+. .+. .|+
T Consensus 43 ~~~~~~--~~~~~~~vLdiG~G~G~~~~~l~~~-~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~fD~ 119 (227)
T 3e8s_A 43 AILLAI--LGRQPERVLDLGCGEGWLLRALADR-GIEAVGVDGDRTLVDAARAAGAGEVHLASYAQLAEAKVPVGKDYDL 119 (227)
T ss_dssp HHHHHH--HHTCCSEEEEETCTTCHHHHHHHTT-TCEEEEEESCHHHHHHHHHTCSSCEEECCHHHHHTTCSCCCCCEEE
T ss_pred HHHHHh--hcCCCCEEEEeCCCCCHHHHHHHHC-CCEEEEEcCCHHHHHHHHHhcccccchhhHHhhcccccccCCCccE
Confidence 344555 233458999999 33 668999998 66777777678889999887642 122 577
Q ss_pred EeccccchhhhHHhhhhhhhhcCCCccchhhhhhcccccceeeeeeccCChHHHHHHHHHHHHHhccCC-----------
Q 036440 77 IPLRLGYSHIKIMIAFFIRLVVGRGRLHIFSWLNFMKRVINMQIIIHVFGDEESVKILKICREAITSKA----------- 145 (181)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~iLHdw~D~~~~~iL~~~~~a~~~~g----------- 145 (181)
+ +...++| +. +..++|++++..++|||
T Consensus 120 v---------------------------------------~~~~~l~-~~--~~~~~l~~~~~~L~pgG~l~~~~~~~~~ 157 (227)
T 3e8s_A 120 I---------------------------------------CANFALL-HQ--DIIELLSAMRTLLVPGGALVIQTLHPWS 157 (227)
T ss_dssp E---------------------------------------EEESCCC-SS--CCHHHHHHHHHTEEEEEEEEEEECCTTT
T ss_pred E---------------------------------------EECchhh-hh--hHHHHHHHHHHHhCCCeEEEEEecCccc
Confidence 7 8888888 44 34579999999999998
Q ss_pred ---------------------------ccCCHHHHHHHHHhCCCeEEEEEE
Q 036440 146 ---------------------------KLSTEKELESLFVEVHFHHYKITP 169 (181)
Q Consensus 146 ---------------------------~eRt~~E~~~Ll~~aGf~~~~i~~ 169 (181)
..+|.++|.++|+++||+++++..
T Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~~~~~~ 208 (227)
T 3e8s_A 158 VADGDYQDGWREESFAGFAGDWQPMPWYFRTLASWLNALDMAGLRLVSLQE 208 (227)
T ss_dssp TCTTCCSCEEEEECCTTSSSCCCCEEEEECCHHHHHHHHHHTTEEEEEEEC
T ss_pred cCccccccccchhhhhccccCcccceEEEecHHHHHHHHHHcCCeEEEEec
Confidence 124899999999999999999874
|
| >3bkw_A MLL3908 protein, S-adenosylmethionine dependent methyltransferase; NP_104914.1; HET: MSE; 1.60A {Mesorhizobium loti} | Back alignment and structure |
|---|
Probab=98.43 E-value=3.1e-06 Score=66.70 Aligned_cols=111 Identities=12% Similarity=0.149 Sum_probs=82.4
Q ss_pred HHHHhhhhhcCCCeEEEec-----------CCCCceEEEeec-hhhhhhhcc---CCCceEEecCCCCC-CCC--cceEe
Q 036440 17 ALKYCKQIFERLGSLVDVG-----------AFPCVKCTEFDQ-PHVVANLLD---TNNLKYLADDFFQS-IPP--VCMIP 78 (181)
Q Consensus 17 ~l~~~~~d~~~~~~lvDvG-----------~~P~l~~~~~Dl-P~Vv~~a~~---~~ri~~~~gDff~~-~P~--~d~~~ 78 (181)
+.+.. ....-.+|||+| +.+..+.+.+|. |..++.+.. ..+++++.+|+.+. +|. .|++
T Consensus 35 l~~~~--~~~~~~~vLdiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~d~~~~~~~~~~fD~v- 111 (243)
T 3bkw_A 35 LRAML--PEVGGLRIVDLGCGFGWFCRWAHEHGASYVLGLDLSEKMLARARAAGPDTGITYERADLDKLHLPQDSFDLA- 111 (243)
T ss_dssp HHHHS--CCCTTCEEEEETCTTCHHHHHHHHTTCSEEEEEESCHHHHHHHHHTSCSSSEEEEECCGGGCCCCTTCEEEE-
T ss_pred HHHhc--cccCCCEEEEEcCcCCHHHHHHHHCCCCeEEEEcCCHHHHHHHHHhcccCCceEEEcChhhccCCCCCceEE-
Confidence 44444 334557999999 233238899998 566666643 35799999999863 433 5888
Q ss_pred ccccchhhhHHhhhhhhhhcCCCccchhhhhhcccccceeeeeeccCChHHHHHHHHHHHHHhccCC-------------
Q 036440 79 LRLGYSHIKIMIAFFIRLVVGRGRLHIFSWLNFMKRVINMQIIIHVFGDEESVKILKICREAITSKA------------- 145 (181)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~iLHdw~D~~~~~iL~~~~~a~~~~g------------- 145 (181)
+...++|.++| ..++|++++..++|||
T Consensus 112 --------------------------------------~~~~~l~~~~~--~~~~l~~~~~~L~pgG~l~~~~~~~~~~~ 151 (243)
T 3bkw_A 112 --------------------------------------YSSLALHYVED--VARLFRTVHQALSPGGHFVFSTEHPIYMA 151 (243)
T ss_dssp --------------------------------------EEESCGGGCSC--HHHHHHHHHHHEEEEEEEEEEEECHHHHC
T ss_pred --------------------------------------EEeccccccch--HHHHHHHHHHhcCcCcEEEEEeCCccccc
Confidence 77888888865 4578999999999988
Q ss_pred --c------------------------------------cCCHHHHHHHHHhCCCeEEEEEEc
Q 036440 146 --K------------------------------------LSTEKELESLFVEVHFHHYKITPL 170 (181)
Q Consensus 146 --~------------------------------------eRt~~E~~~Ll~~aGf~~~~i~~~ 170 (181)
. .+|.++|.++|+++||+++++...
T Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~l~~aGF~~~~~~~~ 214 (243)
T 3bkw_A 152 PARPGWAIDAEGRRTWPIDRYLVEGPRKTDWLAKGVVKHHRTVGTTLNALIRSGFAIEHVEEF 214 (243)
T ss_dssp CSSCSCEECTTSCEEEEECCTTCCEEECTTHHHHSCCEEECCHHHHHHHHHHTTCEEEEEEEC
T ss_pred CcCcceeecCCCceEEeecccccccceeeeeccCceEEEeccHHHHHHHHHHcCCEeeeeccC
Confidence 0 048999999999999999998754
|
| >3grz_A L11 mtase, ribosomal protein L11 methyltransferase; methylase, SAM-binding domain, PSI-2, nysgxrc; 2.00A {Lactobacillus delbrueckii subsp} | Back alignment and structure |
|---|
Probab=98.41 E-value=1.1e-06 Score=68.49 Aligned_cols=123 Identities=10% Similarity=0.060 Sum_probs=91.7
Q ss_pred HHHHHHhhhhhcCCCeEEEec-----------CCCCceEEEeec-hhhhhhhcc------CCCceEEecCCCCCCCC-cc
Q 036440 15 SLALKYCKQIFERLGSLVDVG-----------AFPCVKCTEFDQ-PHVVANLLD------TNNLKYLADDFFQSIPP-VC 75 (181)
Q Consensus 15 ~~~l~~~~~d~~~~~~lvDvG-----------~~P~l~~~~~Dl-P~Vv~~a~~------~~ri~~~~gDff~~~P~-~d 75 (181)
..+++........-.++||+| ++|..+.+.+|. |..++.+.. ..++++..+|+.+..+. .|
T Consensus 48 ~~~~~~l~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~fD 127 (205)
T 3grz_A 48 QLAMLGIERAMVKPLTVADVGTGSGILAIAAHKLGAKSVLATDISDESMTAAEENAALNGIYDIALQKTSLLADVDGKFD 127 (205)
T ss_dssp HHHHHHHHHHCSSCCEEEEETCTTSHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTTCCCCEEEESSTTTTCCSCEE
T ss_pred HHHHHHHHHhccCCCEEEEECCCCCHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCceEEEeccccccCCCCce
Confidence 344444432245567999999 667789999998 666665542 22399999999876554 68
Q ss_pred eEeccccchhhhHHhhhhhhhhcCCCccchhhhhhcccccceeeeeeccCChHHHHHHHHHHHHHhccCC-------ccC
Q 036440 76 MIPLRLGYSHIKIMIAFFIRLVVGRGRLHIFSWLNFMKRVINMQIIIHVFGDEESVKILKICREAITSKA-------KLS 148 (181)
Q Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~iLHdw~D~~~~~iL~~~~~a~~~~g-------~eR 148 (181)
++ +....+| ...++|+++...++|+| ...
T Consensus 128 ~i---------------------------------------~~~~~~~-----~~~~~l~~~~~~L~~gG~l~~~~~~~~ 163 (205)
T 3grz_A 128 LI---------------------------------------VANILAE-----ILLDLIPQLDSHLNEDGQVIFSGIDYL 163 (205)
T ss_dssp EE---------------------------------------EEESCHH-----HHHHHGGGSGGGEEEEEEEEEEEEEGG
T ss_pred EE---------------------------------------EECCcHH-----HHHHHHHHHHHhcCCCCEEEEEecCcc
Confidence 77 4444443 34678999999999999 455
Q ss_pred CHHHHHHHHHhCCCeEEEEEEcCCCCeEEEEEC
Q 036440 149 TEKELESLFVEVHFHHYKITPLFGLPSLIEVYP 181 (181)
Q Consensus 149 t~~E~~~Ll~~aGf~~~~i~~~~~~~~viE~~~ 181 (181)
+.+++.++++++||+.+++....+..+++...|
T Consensus 164 ~~~~~~~~~~~~Gf~~~~~~~~~~w~~~~~~~~ 196 (205)
T 3grz_A 164 QLPKIEQALAENSFQIDLKMRAGRWIGLAISRK 196 (205)
T ss_dssp GHHHHHHHHHHTTEEEEEEEEETTEEEEEEEEC
T ss_pred cHHHHHHHHHHcCCceEEeeccCCEEEEEEecc
Confidence 789999999999999999998888888887654
|
| >3hem_A Cyclopropane-fatty-acyl-phospholipid synthase 2; protein-ligand complex, cytoplasm, lipid synthesis, methyltransferase; HET: D22; 2.39A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kpi_A* | Back alignment and structure |
|---|
Probab=98.40 E-value=2.5e-06 Score=70.73 Aligned_cols=107 Identities=12% Similarity=0.067 Sum_probs=80.5
Q ss_pred hhcCCCeEEEec------------CCCCceEEEeec-hhhhhhhc-------cCCCceEEecCCCCCCCC-cceEecccc
Q 036440 24 IFERLGSLVDVG------------AFPCVKCTEFDQ-PHVVANLL-------DTNNLKYLADDFFQSIPP-VCMIPLRLG 82 (181)
Q Consensus 24 d~~~~~~lvDvG------------~~P~l~~~~~Dl-P~Vv~~a~-------~~~ri~~~~gDff~~~P~-~d~~~~~~~ 82 (181)
+...-.+||||| ++| .+.+.+|+ |..++.+. ..++++++.+|+.+- +. .|++
T Consensus 69 ~~~~~~~vLDiGcG~G~~~~~la~~~~-~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~-~~~fD~v----- 141 (302)
T 3hem_A 69 NLEPGMTLLDIGCGWGSTMRHAVAEYD-VNVIGLTLSENQYAHDKAMFDEVDSPRRKEVRIQGWEEF-DEPVDRI----- 141 (302)
T ss_dssp CCCTTCEEEEETCTTSHHHHHHHHHHC-CEEEEEECCHHHHHHHHHHHHHSCCSSCEEEEECCGGGC-CCCCSEE-----
T ss_pred CCCCcCEEEEeeccCcHHHHHHHHhCC-CEEEEEECCHHHHHHHHHHHHhcCCCCceEEEECCHHHc-CCCccEE-----
Confidence 345567999999 456 78999998 66666553 245899999999764 44 6888
Q ss_pred chhhhHHhhhhhhhhcCCCccchhhhhhcccccceeeeeeccCCh-------HHHHHHHHHHHHHhccCC----------
Q 036440 83 YSHIKIMIAFFIRLVVGRGRLHIFSWLNFMKRVINMQIIIHVFGD-------EESVKILKICREAITSKA---------- 145 (181)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~iLHdw~D-------~~~~~iL~~~~~a~~~~g---------- 145 (181)
+...++|.++| +...++|++++..++|||
T Consensus 142 ----------------------------------~~~~~~~~~~d~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~ 187 (302)
T 3hem_A 142 ----------------------------------VSLGAFEHFADGAGDAGFERYDTFFKKFYNLTPDDGRMLLHTITIP 187 (302)
T ss_dssp ----------------------------------EEESCGGGTTCCSSCCCTTHHHHHHHHHHHSSCTTCEEEEEEEECC
T ss_pred ----------------------------------EEcchHHhcCccccccchhHHHHHHHHHHHhcCCCcEEEEEEEecc
Confidence 66667777733 556677777777777777
Q ss_pred -------------------------------ccCCHHHHHHHHHhCCCeEEEEEEcC
Q 036440 146 -------------------------------KLSTEKELESLFVEVHFHHYKITPLF 171 (181)
Q Consensus 146 -------------------------------~eRt~~E~~~Ll~~aGf~~~~i~~~~ 171 (181)
...|.+++.++++++||+++.+....
T Consensus 188 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~s~~~~~~~l~~aGf~~~~~~~~~ 244 (302)
T 3hem_A 188 DKEEAQELGLTSPMSLLRFIKFILTEIFPGGRLPRISQVDYYSSNAGWKVERYHRIG 244 (302)
T ss_dssp CHHHHHHHTCCCCHHHHHHHHHHHHHTCTTCCCCCHHHHHHHHHHHTCEEEEEEECG
T ss_pred CccchhhccccccccccchHHHHHHhcCCCCCCCCHHHHHHHHHhCCcEEEEEEeCc
Confidence 24678899999999999999887653
|
| >1y8c_A S-adenosylmethionine-dependent methyltransferase; structural genomics, protein structure initiative, PSI; 2.50A {Clostridium acetobutylicum} SCOP: c.66.1.43 | Back alignment and structure |
|---|
Probab=98.37 E-value=5e-06 Score=65.24 Aligned_cols=105 Identities=9% Similarity=0.087 Sum_probs=80.9
Q ss_pred CCCeEEEec----------CCCCceEEEeec-hhhhhhhcc-----CCCceEEecCCCCC-CCC-cceEeccccchhhhH
Q 036440 27 RLGSLVDVG----------AFPCVKCTEFDQ-PHVVANLLD-----TNNLKYLADDFFQS-IPP-VCMIPLRLGYSHIKI 88 (181)
Q Consensus 27 ~~~~lvDvG----------~~P~l~~~~~Dl-P~Vv~~a~~-----~~ri~~~~gDff~~-~P~-~d~~~~~~~~~~~~~ 88 (181)
.-.+|||+| +--+.+.+.+|. |..++.+.. ..+++++.+|+.+. .|. .|++
T Consensus 37 ~~~~vLdiG~G~G~~~~~l~~~~~~~~~~D~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~fD~v----------- 105 (246)
T 1y8c_A 37 VFDDYLDLACGTGNLTENLCPKFKNTWAVDLSQEMLSEAENKFRSQGLKPRLACQDISNLNINRKFDLI----------- 105 (246)
T ss_dssp CTTEEEEETCTTSTTHHHHGGGSSEEEEECSCHHHHHHHHHHHHHTTCCCEEECCCGGGCCCSCCEEEE-----------
T ss_pred CCCeEEEeCCCCCHHHHHHHHCCCcEEEEECCHHHHHHHHHHHhhcCCCeEEEecccccCCccCCceEE-----------
Confidence 447999999 112457899998 666665542 23899999999863 333 5888
Q ss_pred HhhhhhhhhcCCCccchhhhhhcccccceeee-eeccC-ChHHHHHHHHHHHHHhccCCc--------------------
Q 036440 89 MIAFFIRLVVGRGRLHIFSWLNFMKRVINMQI-IIHVF-GDEESVKILKICREAITSKAK-------------------- 146 (181)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-iLHdw-~D~~~~~iL~~~~~a~~~~g~-------------------- 146 (181)
++.. ++|.+ ++++..++|++++..++|||+
T Consensus 106 ----------------------------~~~~~~l~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~ 157 (246)
T 1y8c_A 106 ----------------------------TCCLDSTNYIIDSDDLKKYFKAVSNHLKEGGVFIFDINSYYKLSQVLGNNDF 157 (246)
T ss_dssp ----------------------------EECTTGGGGCCSHHHHHHHHHHHHTTEEEEEEEEEEEECHHHHHTTTTTCCE
T ss_pred ----------------------------EEcCccccccCCHHHHHHHHHHHHHhcCCCcEEEEEecCHHHHHhhcCcceE
Confidence 7777 88887 447788999999999999980
Q ss_pred --------------------------------------------cCCHHHHHHHHHhCCCeEEEEEEc
Q 036440 147 --------------------------------------------LSTEKELESLFVEVHFHHYKITPL 170 (181)
Q Consensus 147 --------------------------------------------eRt~~E~~~Ll~~aGf~~~~i~~~ 170 (181)
..|.+|++++|+++||+++++...
T Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~aGf~~~~~~~~ 225 (246)
T 1y8c_A 158 NYDDDEVFYYWENQFEDDLVSMYISFFVRDGEFYKRFDEEHEERAYKEEDIEKYLKHGQLNILDKVDC 225 (246)
T ss_dssp EEEETTEEEEEEEEEETTEEEEEEEEEEECSSSEEEEEEEEEEECCCHHHHHHHHHHTTEEEEEEEES
T ss_pred EecCCcEEEEEecccCCceEEEEEEEEEecCCcccccEEEEEEEcCCHHHHHHHHHHCCCeEEEEEcc
Confidence 129999999999999999999754
|
| >4htf_A S-adenosylmethionine-dependent methyltransferase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MSE SAM; 1.60A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.36 E-value=1.9e-06 Score=70.56 Aligned_cols=103 Identities=10% Similarity=0.077 Sum_probs=80.5
Q ss_pred CCeEEEec-----------CCCCceEEEeec-hhhhhhhcc-------CCCceEEecCCCCCC--CC--cceEeccccch
Q 036440 28 LGSLVDVG-----------AFPCVKCTEFDQ-PHVVANLLD-------TNNLKYLADDFFQSI--PP--VCMIPLRLGYS 84 (181)
Q Consensus 28 ~~~lvDvG-----------~~P~l~~~~~Dl-P~Vv~~a~~-------~~ri~~~~gDff~~~--P~--~d~~~~~~~~~ 84 (181)
-.+|||+| +. +.+.+.+|+ |..++.+.. .++++++.+|+.+.. +. .|++
T Consensus 69 ~~~vLDiGcG~G~~~~~l~~~-~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~fD~v------- 140 (285)
T 4htf_A 69 KLRVLDAGGGEGQTAIKMAER-GHQVILCDLSAQMIDRAKQAAEAKGVSDNMQFIHCAAQDVASHLETPVDLI------- 140 (285)
T ss_dssp CCEEEEETCTTCHHHHHHHHT-TCEEEEEESCHHHHHHHHHHHHC-CCGGGEEEEESCGGGTGGGCSSCEEEE-------
T ss_pred CCEEEEeCCcchHHHHHHHHC-CCEEEEEECCHHHHHHHHHHHHhcCCCcceEEEEcCHHHhhhhcCCCceEE-------
Confidence 35899999 22 668999998 667766542 378999999998642 33 6888
Q ss_pred hhhHHhhhhhhhhcCCCccchhhhhhcccccceeeeeeccCChHHHHHHHHHHHHHhccCC-------------------
Q 036440 85 HIKIMIAFFIRLVVGRGRLHIFSWLNFMKRVINMQIIIHVFGDEESVKILKICREAITSKA------------------- 145 (181)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~iLHdw~D~~~~~iL~~~~~a~~~~g------------------- 145 (181)
++..++|.++|. .++|+.++..++|||
T Consensus 141 --------------------------------~~~~~l~~~~~~--~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~ 186 (285)
T 4htf_A 141 --------------------------------LFHAVLEWVADP--RSVLQTLWSVLRPGGVLSLMFYNAHGLLMHNMVA 186 (285)
T ss_dssp --------------------------------EEESCGGGCSCH--HHHHHHHHHTEEEEEEEEEEEEBHHHHHHHHHHT
T ss_pred --------------------------------EECchhhcccCH--HHHHHHHHHHcCCCeEEEEEEeCCchHHHHHHHh
Confidence 778888888765 468888999998888
Q ss_pred ---------------------ccCCHHHHHHHHHhCCCeEEEEEEcCC
Q 036440 146 ---------------------KLSTEKELESLFVEVHFHHYKITPLFG 172 (181)
Q Consensus 146 ---------------------~eRt~~E~~~Ll~~aGf~~~~i~~~~~ 172 (181)
...|.+++.++|+++||+++++..+..
T Consensus 187 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~aGf~v~~~~~~~~ 234 (285)
T 4htf_A 187 GNFDYVQAGMPKKKKRTLSPDYPRDPTQVYLWLEEAGWQIMGKTGVRV 234 (285)
T ss_dssp TCHHHHHTTCCCC----CCCSCCBCHHHHHHHHHHTTCEEEEEEEESS
T ss_pred cCHHHHhhhccccccccCCCCCCCCHHHHHHHHHHCCCceeeeeeEEE
Confidence 235789999999999999998877643
|
| >2fk8_A Methoxy mycolic acid synthase 4; S-adenosylmethionine-dependent methyltransferase fold, trans; HET: SAM; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 2fk7_A* 3ha3_A* 3ha5_A* 3ha7_A* | Back alignment and structure |
|---|
Probab=98.35 E-value=2.3e-06 Score=71.30 Aligned_cols=105 Identities=16% Similarity=0.164 Sum_probs=79.2
Q ss_pred hcCCCeEEEec------------CCCCceEEEeec-hhhhhhhcc-------CCCceEEecCCCCCCCC-cceEeccccc
Q 036440 25 FERLGSLVDVG------------AFPCVKCTEFDQ-PHVVANLLD-------TNNLKYLADDFFQSIPP-VCMIPLRLGY 83 (181)
Q Consensus 25 ~~~~~~lvDvG------------~~P~l~~~~~Dl-P~Vv~~a~~-------~~ri~~~~gDff~~~P~-~d~~~~~~~~ 83 (181)
...-.+|||+| .+ +.+.+.+|+ |..++.+.. .++++++.+|+.+ +|. .|++
T Consensus 88 ~~~~~~vLDiGcG~G~~~~~la~~~-~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~-~~~~fD~v------ 159 (318)
T 2fk8_A 88 LKPGMTLLDIGCGWGTTMRRAVERF-DVNVIGLTLSKNQHARCEQVLASIDTNRSRQVLLQGWED-FAEPVDRI------ 159 (318)
T ss_dssp CCTTCEEEEESCTTSHHHHHHHHHH-CCEEEEEESCHHHHHHHHHHHHTSCCSSCEEEEESCGGG-CCCCCSEE------
T ss_pred CCCcCEEEEEcccchHHHHHHHHHC-CCEEEEEECCHHHHHHHHHHHHhcCCCCceEEEECChHH-CCCCcCEE------
Confidence 44557999999 33 558999998 666665532 4689999999854 454 6888
Q ss_pred hhhhHHhhhhhhhhcCCCccchhhhhhcccccceeeeeeccCChHHHHHHHHHHHHHhccCC------------------
Q 036440 84 SHIKIMIAFFIRLVVGRGRLHIFSWLNFMKRVINMQIIIHVFGDEESVKILKICREAITSKA------------------ 145 (181)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~iLHdw~D~~~~~iL~~~~~a~~~~g------------------ 145 (181)
+...++|.+++++..++|++++..++|||
T Consensus 160 ---------------------------------~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~ 206 (318)
T 2fk8_A 160 ---------------------------------VSIEAFEHFGHENYDDFFKRCFNIMPADGRMTVQSSVSYHPYEMAAR 206 (318)
T ss_dssp ---------------------------------EEESCGGGTCGGGHHHHHHHHHHHSCTTCEEEEEEEECCCHHHHHTT
T ss_pred ---------------------------------EEeChHHhcCHHHHHHHHHHHHHhcCCCcEEEEEEeccCCchhhhhc
Confidence 66777777777777777777777777777
Q ss_pred -----------------------ccCCHHHHHHHHHhCCCeEEEEEEc
Q 036440 146 -----------------------KLSTEKELESLFVEVHFHHYKITPL 170 (181)
Q Consensus 146 -----------------------~eRt~~E~~~Ll~~aGf~~~~i~~~ 170 (181)
...|.+++.++++++||+++++...
T Consensus 207 ~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~l~~aGf~~~~~~~~ 254 (318)
T 2fk8_A 207 GKKLSFETARFIKFIVTEIFPGGRLPSTEMMVEHGEKAGFTVPEPLSL 254 (318)
T ss_dssp CHHHHHHHHHHHHHHHHHTSTTCCCCCHHHHHHHHHHTTCBCCCCEEC
T ss_pred cccccccccchhhHHHHhcCCCCcCCCHHHHHHHHHhCCCEEEEEEec
Confidence 2247899999999999999887654
|
| >3cc8_A Putative methyltransferase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS transferase; 1.64A {Bacillus cereus} | Back alignment and structure |
|---|
Probab=98.31 E-value=4.6e-06 Score=64.65 Aligned_cols=111 Identities=11% Similarity=0.171 Sum_probs=77.7
Q ss_pred HHHHHHhhhhhcCCCeEEEec-----------CCCCceEEEeec-hhhhhhhccCCCceEEecCCCC---CCCC--cceE
Q 036440 15 SLALKYCKQIFERLGSLVDVG-----------AFPCVKCTEFDQ-PHVVANLLDTNNLKYLADDFFQ---SIPP--VCMI 77 (181)
Q Consensus 15 ~~~l~~~~~d~~~~~~lvDvG-----------~~P~l~~~~~Dl-P~Vv~~a~~~~ri~~~~gDff~---~~P~--~d~~ 77 (181)
..+++.. . ..-.+|+|+| +.+ .+.+.+|. |..++.+.. ...++..+|+.+ ++|. .|++
T Consensus 23 ~~l~~~~--~-~~~~~vLdiG~G~G~~~~~l~~~~-~~~~~~D~~~~~~~~~~~-~~~~~~~~d~~~~~~~~~~~~fD~v 97 (230)
T 3cc8_A 23 PNLLKHI--K-KEWKEVLDIGCSSGALGAAIKENG-TRVSGIEAFPEAAEQAKE-KLDHVVLGDIETMDMPYEEEQFDCV 97 (230)
T ss_dssp HHHHTTC--C-TTCSEEEEETCTTSHHHHHHHTTT-CEEEEEESSHHHHHHHHT-TSSEEEESCTTTCCCCSCTTCEEEE
T ss_pred HHHHHHh--c-cCCCcEEEeCCCCCHHHHHHHhcC-CeEEEEeCCHHHHHHHHH-hCCcEEEcchhhcCCCCCCCccCEE
Confidence 4455544 2 4567999999 444 78999998 556665543 224788899875 2332 5887
Q ss_pred eccccchhhhHHhhhhhhhhcCCCccchhhhhhcccccceeeeeeccCChHHHHHHHHHHHHHhccCC------------
Q 036440 78 PLRLGYSHIKIMIAFFIRLVVGRGRLHIFSWLNFMKRVINMQIIIHVFGDEESVKILKICREAITSKA------------ 145 (181)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~iLHdw~D~~~~~iL~~~~~a~~~~g------------ 145 (181)
++..++|.++|. .++|++++..++|||
T Consensus 98 ---------------------------------------~~~~~l~~~~~~--~~~l~~~~~~L~~gG~l~~~~~~~~~~ 136 (230)
T 3cc8_A 98 ---------------------------------------IFGDVLEHLFDP--WAVIEKVKPYIKQNGVILASIPNVSHI 136 (230)
T ss_dssp ---------------------------------------EEESCGGGSSCH--HHHHHHTGGGEEEEEEEEEEEECTTSH
T ss_pred ---------------------------------------EECChhhhcCCH--HHHHHHHHHHcCCCCEEEEEeCCcchH
Confidence 666777776655 367777777777766
Q ss_pred ------------------------ccCCHHHHHHHHHhCCCeEEEEEEcC
Q 036440 146 ------------------------KLSTEKELESLFVEVHFHHYKITPLF 171 (181)
Q Consensus 146 ------------------------~eRt~~E~~~Ll~~aGf~~~~i~~~~ 171 (181)
+..|.+++.++|+++||+++++....
T Consensus 137 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~~~~ 186 (230)
T 3cc8_A 137 SVLAPLLAGNWTYTEYGLLDKTHIRFFTFNEMLRMFLKAGYSISKVDRVY 186 (230)
T ss_dssp HHHHHHHTTCCCCBSSSTTBTTCCCCCCHHHHHHHHHHTTEEEEEEEEEE
T ss_pred HHHHHHhcCCceeccCCCCCcceEEEecHHHHHHHHHHcCCeEEEEEecc
Confidence 22589999999999999999887643
|
| >2zfu_A Nucleomethylin, cerebral protein 1; nucleolar protein, SAM-binding protein, protein structure, N phosphoprotein, nuclear protein; HET: SAH; 2.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.30 E-value=6e-06 Score=64.54 Aligned_cols=113 Identities=9% Similarity=0.008 Sum_probs=82.4
Q ss_pred HHHHhhhhhcCCCeEEEecCCC-------CceEEEeechhhhhhhccCCCceEEecCCCC-CCCC--cceEeccccchhh
Q 036440 17 ALKYCKQIFERLGSLVDVGAFP-------CVKCTEFDQPHVVANLLDTNNLKYLADDFFQ-SIPP--VCMIPLRLGYSHI 86 (181)
Q Consensus 17 ~l~~~~~d~~~~~~lvDvG~~P-------~l~~~~~DlP~Vv~~a~~~~ri~~~~gDff~-~~P~--~d~~~~~~~~~~~ 86 (181)
+++... ....-.+|||+|.-+ ..+.+.+|.... ++++..+|+.+ ++|. .|++
T Consensus 58 ~~~~l~-~~~~~~~vLDiG~G~G~~~~~l~~~v~~~D~s~~--------~~~~~~~d~~~~~~~~~~fD~v--------- 119 (215)
T 2zfu_A 58 IARDLR-QRPASLVVADFGCGDCRLASSIRNPVHCFDLASL--------DPRVTVCDMAQVPLEDESVDVA--------- 119 (215)
T ss_dssp HHHHHH-TSCTTSCEEEETCTTCHHHHHCCSCEEEEESSCS--------STTEEESCTTSCSCCTTCEEEE---------
T ss_pred HHHHHh-ccCCCCeEEEECCcCCHHHHHhhccEEEEeCCCC--------CceEEEeccccCCCCCCCEeEE---------
Confidence 444442 234557899999222 246777777544 78889999886 3443 5888
Q ss_pred hHHhhhhhhhhcCCCccchhhhhhcccccceeeeeeccCChHHHHHHHHHHHHHhccCC---------ccCCHHHHHHHH
Q 036440 87 KIMIAFFIRLVVGRGRLHIFSWLNFMKRVINMQIIIHVFGDEESVKILKICREAITSKA---------KLSTEKELESLF 157 (181)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~iLHdw~D~~~~~iL~~~~~a~~~~g---------~eRt~~E~~~Ll 157 (181)
+...++| + ++..++|+.++..++||| +..+.+++..+|
T Consensus 120 ------------------------------~~~~~l~-~--~~~~~~l~~~~~~L~~gG~l~i~~~~~~~~~~~~~~~~l 166 (215)
T 2zfu_A 120 ------------------------------VFCLSLM-G--TNIRDFLEEANRVLKPGGLLKVAEVSSRFEDVRTFLRAV 166 (215)
T ss_dssp ------------------------------EEESCCC-S--SCHHHHHHHHHHHEEEEEEEEEEECGGGCSCHHHHHHHH
T ss_pred ------------------------------EEehhcc-c--cCHHHHHHHHHHhCCCCeEEEEEEcCCCCCCHHHHHHHH
Confidence 7888888 4 445789999999999999 345899999999
Q ss_pred HhCCCeEEEEEEcCCCCeEEEEE
Q 036440 158 VEVHFHHYKITPLFGLPSLIEVY 180 (181)
Q Consensus 158 ~~aGf~~~~i~~~~~~~~viE~~ 180 (181)
+++||+++++....+...++.++
T Consensus 167 ~~~Gf~~~~~~~~~~~~~~~~~~ 189 (215)
T 2zfu_A 167 TKLGFKIVSKDLTNSHFFLFDFQ 189 (215)
T ss_dssp HHTTEEEEEEECCSTTCEEEEEE
T ss_pred HHCCCEEEEEecCCCeEEEEEEE
Confidence 99999998876665555666654
|
| >3gu3_A Methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; HET: SAH; 2.30A {Bacillus cereus} SCOP: c.66.1.49 PDB: 2gh1_A | Back alignment and structure |
|---|
Probab=98.29 E-value=5.1e-06 Score=68.54 Aligned_cols=104 Identities=13% Similarity=0.160 Sum_probs=73.9
Q ss_pred hhcCCCeEEEec------------CCCC-ceEEEeec-hhhhhhhcc-----CCCceEEecCCCCC-CCC-cceEecccc
Q 036440 24 IFERLGSLVDVG------------AFPC-VKCTEFDQ-PHVVANLLD-----TNNLKYLADDFFQS-IPP-VCMIPLRLG 82 (181)
Q Consensus 24 d~~~~~~lvDvG------------~~P~-l~~~~~Dl-P~Vv~~a~~-----~~ri~~~~gDff~~-~P~-~d~~~~~~~ 82 (181)
....-.+||||| .+|. .+.+.+|+ |..++.+.. ..+++++.+|+.+. .+. .|++
T Consensus 19 ~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~v~~~~~d~~~~~~~~~fD~v----- 93 (284)
T 3gu3_A 19 KITKPVHIVDYGCGYGYLGLVLMPLLPEGSKYTGIDSGETLLAEARELFRLLPYDSEFLEGDATEIELNDKYDIA----- 93 (284)
T ss_dssp CCCSCCEEEEETCTTTHHHHHHTTTSCTTCEEEEEESCHHHHHHHHHHHHSSSSEEEEEESCTTTCCCSSCEEEE-----
T ss_pred ccCCCCeEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHhcCCceEEEEcchhhcCcCCCeeEE-----
Confidence 345668999999 7784 89999998 556654432 34899999999862 233 6888
Q ss_pred chhhhHHhhhhhhhhcCCCccchhhhhhcccccceeeeeeccCChHHHHHHHHHHHHHhccCC-----------------
Q 036440 83 YSHIKIMIAFFIRLVVGRGRLHIFSWLNFMKRVINMQIIIHVFGDEESVKILKICREAITSKA----------------- 145 (181)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~iLHdw~D~~~~~iL~~~~~a~~~~g----------------- 145 (181)
+...++|.++|.. ++|++++..++|||
T Consensus 94 ----------------------------------~~~~~l~~~~~~~--~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~ 137 (284)
T 3gu3_A 94 ----------------------------------ICHAFLLHMTTPE--TMLQKMIHSVKKGGKIICFEPHWISNMASYL 137 (284)
T ss_dssp ----------------------------------EEESCGGGCSSHH--HHHHHHHHTEEEEEEEEEEECCHHHHHHSEE
T ss_pred ----------------------------------EECChhhcCCCHH--HHHHHHHHHcCCCCEEEEEecchhcccccce
Confidence 5566666665543 56666666666666
Q ss_pred ----------------------------ccCCHHHHHHHHHhCCCeEEEEE
Q 036440 146 ----------------------------KLSTEKELESLFVEVHFHHYKIT 168 (181)
Q Consensus 146 ----------------------------~eRt~~E~~~Ll~~aGf~~~~i~ 168 (181)
...+.+++.++|++|||+++++.
T Consensus 138 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~aGF~~v~~~ 188 (284)
T 3gu3_A 138 LDGEKQSEFIQLGVLQKLFESDTQRNGKDGNIGMKIPIYLSELGVKNIECR 188 (284)
T ss_dssp ETTSCHHHHCCHHHHHHHHHHHHHHTCCCTTGGGTHHHHHHHTTCEEEEEE
T ss_pred ecCcchhhccchHHHHHHHHHHhhhhcccccHHHHHHHHHHHcCCCeEEEE
Confidence 23345678999999999999774
|
| >3ccf_A Cyclopropane-fatty-acyl-phospholipid synthase; YP_321342.1, putative methyltransferase; 1.90A {Anabaena variabilis atcc 29413} | Back alignment and structure |
|---|
Probab=98.26 E-value=5.4e-06 Score=67.75 Aligned_cols=113 Identities=12% Similarity=0.089 Sum_probs=76.3
Q ss_pred HHHHHHhhhhhcCCCeEEEec----------CCCCceEEEeec-hhhhhhhcc-CCCceEEecCCCCC-CCC-cceEecc
Q 036440 15 SLALKYCKQIFERLGSLVDVG----------AFPCVKCTEFDQ-PHVVANLLD-TNNLKYLADDFFQS-IPP-VCMIPLR 80 (181)
Q Consensus 15 ~~~l~~~~~d~~~~~~lvDvG----------~~P~l~~~~~Dl-P~Vv~~a~~-~~ri~~~~gDff~~-~P~-~d~~~~~ 80 (181)
..+++.. ....-.+||||| +-|+.+.+.+|+ |..++.+.. .+++++..+|+.+- .+. .|++
T Consensus 47 ~~l~~~l--~~~~~~~vLDiGcG~G~~~~~l~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~d~~~~~~~~~fD~v--- 121 (279)
T 3ccf_A 47 EDLLQLL--NPQPGEFILDLGCGTGQLTEKIAQSGAEVLGTDNAATMIEKARQNYPHLHFDVADARNFRVDKPLDAV--- 121 (279)
T ss_dssp CHHHHHH--CCCTTCEEEEETCTTSHHHHHHHHTTCEEEEEESCHHHHHHHHHHCTTSCEEECCTTTCCCSSCEEEE---
T ss_pred HHHHHHh--CCCCCCEEEEecCCCCHHHHHHHhCCCeEEEEECCHHHHHHHHhhCCCCEEEECChhhCCcCCCcCEE---
Confidence 4556666 455667999999 237889999998 666666543 37899999999762 222 5887
Q ss_pred ccchhhhHHhhhhhhhhcCCCccchhhhhhcccccceeeeeeccCChHHHHHHHHHHHHHhccCC---------------
Q 036440 81 LGYSHIKIMIAFFIRLVVGRGRLHIFSWLNFMKRVINMQIIIHVFGDEESVKILKICREAITSKA--------------- 145 (181)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~iLHdw~D~~~~~iL~~~~~a~~~~g--------------- 145 (181)
+...++|.++|.. ++|++++..++|||
T Consensus 122 ------------------------------------~~~~~l~~~~d~~--~~l~~~~~~LkpgG~l~~~~~~~~~~~~~ 163 (279)
T 3ccf_A 122 ------------------------------------FSNAMLHWVKEPE--AAIASIHQALKSGGRFVAEFGGKGNIKYI 163 (279)
T ss_dssp ------------------------------------EEESCGGGCSCHH--HHHHHHHHHEEEEEEEEEEEECTTTTHHH
T ss_pred ------------------------------------EEcchhhhCcCHH--HHHHHHHHhcCCCcEEEEEecCCcchHHH
Confidence 4444444444322 34455555555544
Q ss_pred ----------------------ccCCHHHHHHHHHhCCCeEEEEEEc
Q 036440 146 ----------------------KLSTEKELESLFVEVHFHHYKITPL 170 (181)
Q Consensus 146 ----------------------~eRt~~E~~~Ll~~aGf~~~~i~~~ 170 (181)
...|.+++.++|+++||+++++...
T Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~~~~~~~ 210 (279)
T 3ccf_A 164 LEALYNALETLGIHNPQALNPWYFPSIGEYVNILEKQGFDVTYAALF 210 (279)
T ss_dssp HHHHHHHHHHHTCCCGGGGCCCCCCCHHHHHHHHHHHTEEEEEEEEE
T ss_pred HHHHHHHHHhcCCccccCcCceeCCCHHHHHHHHHHcCCEEEEEEEe
Confidence 2458999999999999999887643
|
| >1ri5_A MRNA capping enzyme; methyltransferase, M7G, messenger RNA CAP, structural genomics, PSI, protein structure initiative; 2.10A {Encephalitozoon cuniculi} SCOP: c.66.1.34 PDB: 1ri2_A* 1ri3_A* 1ri1_A* 1ri4_A 1z3c_A* 2hv9_A* | Back alignment and structure |
|---|
Probab=98.25 E-value=5.6e-06 Score=67.11 Aligned_cols=106 Identities=11% Similarity=0.040 Sum_probs=80.9
Q ss_pred cCCCeEEEec-----------CCCCceEEEeec-hhhhhhhcc-------CCCceEEecCCCC-CC-CC--cceEecccc
Q 036440 26 ERLGSLVDVG-----------AFPCVKCTEFDQ-PHVVANLLD-------TNNLKYLADDFFQ-SI-PP--VCMIPLRLG 82 (181)
Q Consensus 26 ~~~~~lvDvG-----------~~P~l~~~~~Dl-P~Vv~~a~~-------~~ri~~~~gDff~-~~-P~--~d~~~~~~~ 82 (181)
..-.+|||+| +.+..+.+.+|+ |..++.+.. ..+++++.+|+.+ ++ +. .|++
T Consensus 63 ~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~fD~v----- 137 (298)
T 1ri5_A 63 KRGDSVLDLGCGKGGDLLKYERAGIGEYYGVDIAEVSINDARVRARNMKRRFKVFFRAQDSYGRHMDLGKEFDVI----- 137 (298)
T ss_dssp CTTCEEEEETCTTTTTHHHHHHHTCSEEEEEESCHHHHHHHHHHHHTSCCSSEEEEEESCTTTSCCCCSSCEEEE-----
T ss_pred CCCCeEEEECCCCCHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhcCCCccEEEEECCccccccCCCCCcCEE-----
Confidence 4557999999 345568999998 566665532 2579999999986 34 22 5888
Q ss_pred chhhhHHhhhhhhhhcCCCccchhhhhhcccccceeeeeecc--CChHHHHHHHHHHHHHhccCCc--------------
Q 036440 83 YSHIKIMIAFFIRLVVGRGRLHIFSWLNFMKRVINMQIIIHV--FGDEESVKILKICREAITSKAK-------------- 146 (181)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~iLHd--w~D~~~~~iL~~~~~a~~~~g~-------------- 146 (181)
+...++|. .+.++..++|++++..++|||+
T Consensus 138 ----------------------------------~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~ 183 (298)
T 1ri5_A 138 ----------------------------------SSQFSFHYAFSTSESLDIAQRNIARHLRPGGYFIMTVPSRDVILER 183 (298)
T ss_dssp ----------------------------------EEESCGGGGGSSHHHHHHHHHHHHHTEEEEEEEEEEEECHHHHHHH
T ss_pred ----------------------------------EECchhhhhcCCHHHHHHHHHHHHHhcCCCCEEEEEECCHHHHHHH
Confidence 77777877 6677788889999988888881
Q ss_pred -------------------------------------------cCCHHHHHHHHHhCCCeEEEEEEc
Q 036440 147 -------------------------------------------LSTEKELESLFVEVHFHHYKITPL 170 (181)
Q Consensus 147 -------------------------------------------eRt~~E~~~Ll~~aGf~~~~i~~~ 170 (181)
..|.++++.+|+++||+++++.+.
T Consensus 184 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~l~~ll~~aGf~~v~~~~~ 250 (298)
T 1ri5_A 184 YKQGRMSNDFYKIELEKMEDVPMESVREYRFTLLDSVNNCIEYFVDFTRMVDGFKRLGLSLVERKGF 250 (298)
T ss_dssp HHHTCCBCSSEEEECCCCSSCCTTTCCEEEEEETTSCSSEEEECCCHHHHHHHHHTTTEEEEEEEEH
T ss_pred HccCccCCeeEEEEeCccccccccccceEEEEEchhhcCCcccccCHHHHHHHHHHcCCEEEEecCH
Confidence 126799999999999999988764
|
| >3d2l_A SAM-dependent methyltransferase; ZP_00538691.1, structural G joint center for structural genomics, JCSG; HET: MSE; 1.90A {Exiguobacterium sibiricum 255-15} | Back alignment and structure |
|---|
Probab=98.24 E-value=2.2e-05 Score=61.75 Aligned_cols=105 Identities=12% Similarity=0.202 Sum_probs=78.4
Q ss_pred hcCCCeEEEec-----------CCCCceEEEeec-hhhhhhhcc-----CCCceEEecCCCCC-CCC-cceEeccccchh
Q 036440 25 FERLGSLVDVG-----------AFPCVKCTEFDQ-PHVVANLLD-----TNNLKYLADDFFQS-IPP-VCMIPLRLGYSH 85 (181)
Q Consensus 25 ~~~~~~lvDvG-----------~~P~l~~~~~Dl-P~Vv~~a~~-----~~ri~~~~gDff~~-~P~-~d~~~~~~~~~~ 85 (181)
+..-.+|||+| +. .+.+.+|. |..++.+.. ..+++++.+|+.+. .|. .|++
T Consensus 31 ~~~~~~vLdiG~G~G~~~~~l~~~--~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~fD~v-------- 100 (243)
T 3d2l_A 31 VEPGKRIADIGCGTGTATLLLADH--YEVTGVDLSEEMLEIAQEKAMETNRHVDFWVQDMRELELPEPVDAI-------- 100 (243)
T ss_dssp SCTTCEEEEESCTTCHHHHHHTTT--SEEEEEESCHHHHHHHHHHHHHTTCCCEEEECCGGGCCCSSCEEEE--------
T ss_pred cCCCCeEEEecCCCCHHHHHHhhC--CeEEEEECCHHHHHHHHHhhhhcCCceEEEEcChhhcCCCCCcCEE--------
Confidence 33447999999 22 68999998 667666542 36899999998863 333 5777
Q ss_pred hhHHhhhhhhhhcCCCccchhhhhhcccccceeee-eeccC-ChHHHHHHHHHHHHHhccCC------------------
Q 036440 86 IKIMIAFFIRLVVGRGRLHIFSWLNFMKRVINMQI-IIHVF-GDEESVKILKICREAITSKA------------------ 145 (181)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-iLHdw-~D~~~~~iL~~~~~a~~~~g------------------ 145 (181)
++.. ++|.+ +.++..++|++++..++|||
T Consensus 101 -------------------------------~~~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~ 149 (243)
T 3d2l_A 101 -------------------------------TILCDSLNYLQTEADVKQTFDSAARLLTDGGKLLFDVHSPYKMETLFNG 149 (243)
T ss_dssp -------------------------------EECTTGGGGCCSHHHHHHHHHHHHHHEEEEEEEEEEEECHHHHHTTTSS
T ss_pred -------------------------------EEeCCchhhcCCHHHHHHHHHHHHHhcCCCeEEEEEcCCHHHHHHhcCC
Confidence 4443 66665 56677788888888888877
Q ss_pred -------------------------------------------------ccCCHHHHHHHHHhCCCeEEEEEEc
Q 036440 146 -------------------------------------------------KLSTEKELESLFVEVHFHHYKITPL 170 (181)
Q Consensus 146 -------------------------------------------------~eRt~~E~~~Ll~~aGf~~~~i~~~ 170 (181)
+..|.+|++++|++|||+++++...
T Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~aGf~~~~~~~~ 223 (243)
T 3d2l_A 150 KTYATHAEQSSYIWFADPGEEPLSVVHELTFFIEGEDGRYDRVDETHHQRTYPPEQYITWLREAGFRVCAVTGD 223 (243)
T ss_dssp EEEEEECSSEEEEEEEEECSSTTEEEEEEEEEEECTTSCEEEEEEEEEEECCCHHHHHHHHHHTTEEEEEEEET
T ss_pred cceeEECCCcEEEEEeecCccccEEEEEEEEEEEcCCCceEEEEEEEeEecCCHHHHHHHHHHCCCeEEEEecC
Confidence 0248999999999999999999754
|
| >2p35_A Trans-aconitate 2-methyltransferase; SAM dependent methyltrans agrobacterium tumefaciens, structural genomics, PSI-2; HET: SAH; 1.95A {Agrobacterium tumefaciens str} | Back alignment and structure |
|---|
Probab=98.18 E-value=5.6e-06 Score=65.99 Aligned_cols=66 Identities=17% Similarity=0.122 Sum_probs=45.9
Q ss_pred HHHHHHhhhhhcCCCeEEEec------------CCCCceEEEeec-hhhhhhhcc-CCCceEEecCCCCCCCC--cceEe
Q 036440 15 SLALKYCKQIFERLGSLVDVG------------AFPCVKCTEFDQ-PHVVANLLD-TNNLKYLADDFFQSIPP--VCMIP 78 (181)
Q Consensus 15 ~~~l~~~~~d~~~~~~lvDvG------------~~P~l~~~~~Dl-P~Vv~~a~~-~~ri~~~~gDff~~~P~--~d~~~ 78 (181)
..+++.. ....-.+|||+| .+|..+.+.+|+ |..++.+.. .++++++.+|+.+..|. .|++.
T Consensus 23 ~~l~~~~--~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~d~~~~~~~~~fD~v~ 100 (259)
T 2p35_A 23 RDLLAQV--PLERVLNGYDLGCGPGNSTELLTDRYGVNVITGIDSDDDMLEKAADRLPNTNFGKADLATWKPAQKADLLY 100 (259)
T ss_dssp HHHHTTC--CCSCCSSEEEETCTTTHHHHHHHHHHCTTSEEEEESCHHHHHHHHHHSTTSEEEECCTTTCCCSSCEEEEE
T ss_pred HHHHHhc--CCCCCCEEEEecCcCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhCCCcEEEECChhhcCccCCcCEEE
Confidence 3444444 345567999999 678999999998 566666643 57899999998763233 58874
Q ss_pred cccc
Q 036440 79 LRLG 82 (181)
Q Consensus 79 ~~~~ 82 (181)
.+..
T Consensus 101 ~~~~ 104 (259)
T 2p35_A 101 ANAV 104 (259)
T ss_dssp EESC
T ss_pred EeCc
Confidence 4333
|
| >3bkx_A SAM-dependent methyltransferase; YP_807781.1, cyclopropane-fatty-acyl-phospholipid synthase-L protein, methyltransferase domain; 1.85A {Lactobacillus casei} | Back alignment and structure |
|---|
Probab=98.17 E-value=1.4e-05 Score=64.51 Aligned_cols=140 Identities=9% Similarity=0.017 Sum_probs=75.3
Q ss_pred HHHHHhhhhhcCCCeEEEec------------CC-CCceEEEeechh-------hhhhhcc-------CCCceEEecC-C
Q 036440 16 LALKYCKQIFERLGSLVDVG------------AF-PCVKCTEFDQPH-------VVANLLD-------TNNLKYLADD-F 67 (181)
Q Consensus 16 ~~l~~~~~d~~~~~~lvDvG------------~~-P~l~~~~~DlP~-------Vv~~a~~-------~~ri~~~~gD-f 67 (181)
.+++.. +...-.+||||| ++ |..+.+.+|+-. .++.+.. .+++++..+| +
T Consensus 34 ~l~~~~--~~~~~~~vLDiGcG~G~~~~~l~~~~g~~~~v~gvD~s~~~~~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~ 111 (275)
T 3bkx_A 34 AIAEAW--QVKPGEKILEIGCGQGDLSAVLADQVGSSGHVTGIDIASPDYGAPLTLGQAWNHLLAGPLGDRLTVHFNTNL 111 (275)
T ss_dssp HHHHHH--TCCTTCEEEEESCTTSHHHHHHHHHHCTTCEEEEECSSCTTCCSSSCHHHHHHHHHTSTTGGGEEEECSCCT
T ss_pred HHHHHc--CCCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEECCccccccHHHHHHHHHHHHhcCCCCceEEEECChh
Confidence 444555 456668999999 44 778999999843 5554432 3689999998 6
Q ss_pred CC-CC--CC--cceEeccccchhhhH---Hhhhhhhhhc-CCCccchhhhhhcccccceeeeeeccCChHHHHH----HH
Q 036440 68 FQ-SI--PP--VCMIPLRLGYSHIKI---MIAFFIRLVV-GRGRLHIFSWLNFMKRVINMQIIIHVFGDEESVK----IL 134 (181)
Q Consensus 68 f~-~~--P~--~d~~~~~~~~~~~~~---~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~iLHdw~D~~~~~----iL 134 (181)
.. .+ |. .|++.....+.|+.- .+.-+-++.+ |+ . +++............... +.
T Consensus 112 ~~~~~~~~~~~fD~v~~~~~l~~~~~~~~~~~~~~~l~~~gG-~------------l~~~~~~~~~~~~~~~~~~~~~~~ 178 (275)
T 3bkx_A 112 SDDLGPIADQHFDRVVLAHSLWYFASANALALLFKNMAAVCD-H------------VDVAEWSMQPTALDQIGHLQAAMI 178 (275)
T ss_dssp TTCCGGGTTCCCSEEEEESCGGGSSCHHHHHHHHHHHTTTCS-E------------EEEEEECSSCSSGGGHHHHHHHHH
T ss_pred hhccCCCCCCCEEEEEEccchhhCCCHHHHHHHHHHHhCCCC-E------------EEEEEecCCCCchhhhhHHHHHHH
Confidence 53 23 32 588743333333211 1111112222 32 1 111111111111112122 22
Q ss_pred HHHHHHhccCC-----ccCCHHHHHHHHHhCCCeEEEEEEc
Q 036440 135 KICREAITSKA-----KLSTEKELESLFVEVHFHHYKITPL 170 (181)
Q Consensus 135 ~~~~~a~~~~g-----~eRt~~E~~~Ll~~aGf~~~~i~~~ 170 (181)
+.......+.+ ...|.+++.++++++||+++++.+.
T Consensus 179 ~~~~~~~~~~~~~~~~~~~s~~~l~~~l~~aGf~~~~~~~~ 219 (275)
T 3bkx_A 179 QGLLYAIAPSDVANIRTLITPDTLAQIAHDNTWTYTAGTIV 219 (275)
T ss_dssp HHHHHHHSCCTTCSCCCCCCHHHHHHHHHHHTCEEEECCCB
T ss_pred HHHHhhccccccccccccCCHHHHHHHHHHCCCeeEEEEEe
Confidence 22222222221 4679999999999999999988765
|
| >3e05_A Precorrin-6Y C5,15-methyltransferase (decarboxyla; porphyrin metabolism, S-adenosyl-methionine; 1.80A {Geobacter metallireducens} SCOP: c.66.1.0 | Back alignment and structure |
|---|
Probab=98.17 E-value=1.9e-05 Score=61.51 Aligned_cols=105 Identities=10% Similarity=0.105 Sum_probs=79.3
Q ss_pred HHHHHhhhhhcCCCeEEEec------------CCCCceEEEeec-hhhhhhhcc------CCCceEEecCCCCCCC---C
Q 036440 16 LALKYCKQIFERLGSLVDVG------------AFPCVKCTEFDQ-PHVVANLLD------TNNLKYLADDFFQSIP---P 73 (181)
Q Consensus 16 ~~l~~~~~d~~~~~~lvDvG------------~~P~l~~~~~Dl-P~Vv~~a~~------~~ri~~~~gDff~~~P---~ 73 (181)
.+++.. +...-.+|+|+| .+|..+.+.+|. |..++.+.. .++++++.+|+.+.++ .
T Consensus 31 ~~l~~l--~~~~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~ 108 (204)
T 3e05_A 31 VTLSKL--RLQDDLVMWDIGAGSASVSIEASNLMPNGRIFALERNPQYLGFIRDNLKKFVARNVTLVEAFAPEGLDDLPD 108 (204)
T ss_dssp HHHHHT--TCCTTCEEEEETCTTCHHHHHHHHHCTTSEEEEEECCHHHHHHHHHHHHHHTCTTEEEEECCTTTTCTTSCC
T ss_pred HHHHHc--CCCCCCEEEEECCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeCChhhhhhcCCC
Confidence 445555 456668999999 778899999998 677766542 2789999999987654 3
Q ss_pred cceEeccccchhhhHHhhhhhhhhcCCCccchhhhhhcccccceeeeeeccCChHHHHHHHHHHHHHhccCC-------c
Q 036440 74 VCMIPLRLGYSHIKIMIAFFIRLVVGRGRLHIFSWLNFMKRVINMQIIIHVFGDEESVKILKICREAITSKA-------K 146 (181)
Q Consensus 74 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~iLHdw~D~~~~~iL~~~~~a~~~~g-------~ 146 (181)
.|++ ++...++ ...++|+.+...++||| .
T Consensus 109 ~D~i---------------------------------------~~~~~~~-----~~~~~l~~~~~~LkpgG~l~~~~~~ 144 (204)
T 3e05_A 109 PDRV---------------------------------------FIGGSGG-----MLEEIIDAVDRRLKSEGVIVLNAVT 144 (204)
T ss_dssp CSEE---------------------------------------EESCCTT-----CHHHHHHHHHHHCCTTCEEEEEECB
T ss_pred CCEE---------------------------------------EECCCCc-----CHHHHHHHHHHhcCCCeEEEEEecc
Confidence 6777 4444443 55689999999999999 3
Q ss_pred cCCHHHHHHHHHhCCCeEEEE
Q 036440 147 LSTEKELESLFVEVHFHHYKI 167 (181)
Q Consensus 147 eRt~~E~~~Ll~~aGf~~~~i 167 (181)
..+.+++..+++++|| .+++
T Consensus 145 ~~~~~~~~~~l~~~g~-~~~~ 164 (204)
T 3e05_A 145 LDTLTKAVEFLEDHGY-MVEV 164 (204)
T ss_dssp HHHHHHHHHHHHHTTC-EEEE
T ss_pred cccHHHHHHHHHHCCC-ceeE
Confidence 4567889999999999 4443
|
| >3ggd_A SAM-dependent methyltransferase; YP_325210.1, structural GEN joint center for structural genomics, JCSG; HET: SAH; 2.11A {Anabaena variabilis atcc 29413} | Back alignment and structure |
|---|
Probab=98.12 E-value=1.4e-05 Score=63.61 Aligned_cols=102 Identities=18% Similarity=0.178 Sum_probs=79.5
Q ss_pred hcCCCeEEEec------------CCCCceEEEeec-hhhhhhhcc---CCCceEEecCCCCC-CCC-------cceEecc
Q 036440 25 FERLGSLVDVG------------AFPCVKCTEFDQ-PHVVANLLD---TNNLKYLADDFFQS-IPP-------VCMIPLR 80 (181)
Q Consensus 25 ~~~~~~lvDvG------------~~P~l~~~~~Dl-P~Vv~~a~~---~~ri~~~~gDff~~-~P~-------~d~~~~~ 80 (181)
...-.+|||+| .++ +.+.+|. |..++.+.. ..+++++.+|+.+. .+. .|++
T Consensus 54 ~~~~~~vLD~GcG~G~~~~~la~~~~--~v~gvD~s~~~~~~a~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~d~v--- 128 (245)
T 3ggd_A 54 FNPELPLIDFACGNGTQTKFLSQFFP--RVIGLDVSKSALEIAAKENTAANISYRLLDGLVPEQAAQIHSEIGDANI--- 128 (245)
T ss_dssp SCTTSCEEEETCTTSHHHHHHHHHSS--CEEEEESCHHHHHHHHHHSCCTTEEEEECCTTCHHHHHHHHHHHCSCEE---
T ss_pred cCCCCeEEEEcCCCCHHHHHHHHhCC--CEEEEECCHHHHHHHHHhCcccCceEEECcccccccccccccccCccEE---
Confidence 34457899999 455 6788887 566665542 45899999999873 111 4566
Q ss_pred ccchhhhHHhhhhhhhhcCCCccchhhhhhcccccceeeeeeccCChHHHHHHHHHHHHHhccCCc--------------
Q 036440 81 LGYSHIKIMIAFFIRLVVGRGRLHIFSWLNFMKRVINMQIIIHVFGDEESVKILKICREAITSKAK-------------- 146 (181)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~iLHdw~D~~~~~iL~~~~~a~~~~g~-------------- 146 (181)
+...++|..++++..++|++++..++|||+
T Consensus 129 ------------------------------------~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~ 172 (245)
T 3ggd_A 129 ------------------------------------YMRTGFHHIPVEKRELLGQSLRILLGKQGAMYLIELGTGCIDFF 172 (245)
T ss_dssp ------------------------------------EEESSSTTSCGGGHHHHHHHHHHHHTTTCEEEEEEECTTHHHHH
T ss_pred ------------------------------------EEcchhhcCCHHHHHHHHHHHHHHcCCCCEEEEEeCCccccHHH
Confidence 888999999999999999999999999991
Q ss_pred -------------------------cCCHHHHHHHHHhCCCeEEEEEE
Q 036440 147 -------------------------LSTEKELESLFVEVHFHHYKITP 169 (181)
Q Consensus 147 -------------------------eRt~~E~~~Ll~~aGf~~~~i~~ 169 (181)
..|.+|+.++| +||+++....
T Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--aGf~~~~~~~ 218 (245)
T 3ggd_A 173 NSLLEKYGQLPYELLLVMEHGIRPGIFTAEDIELYF--PDFEILSQGE 218 (245)
T ss_dssp HHHHHHHSSCCHHHHHHHTTTCCCCCCCHHHHHHHC--TTEEEEEEEC
T ss_pred HHHHhCCCCCchhhhhccccCCCCCccCHHHHHHHh--CCCEEEeccc
Confidence 24889999999 9999987653
|
| >2p8j_A S-adenosylmethionine-dependent methyltransferase; NP_349143.1; HET: PGE GOL; 2.00A {Clostridium acetobutylicum} | Back alignment and structure |
|---|
Probab=98.09 E-value=1.5e-05 Score=61.54 Aligned_cols=112 Identities=11% Similarity=0.110 Sum_probs=84.5
Q ss_pred HHHHHhhhhhcCCCeEEEec-----------CCCCceEEEeec-hhhhhhhcc-----CCCceEEecCCCC-CCCC--cc
Q 036440 16 LALKYCKQIFERLGSLVDVG-----------AFPCVKCTEFDQ-PHVVANLLD-----TNNLKYLADDFFQ-SIPP--VC 75 (181)
Q Consensus 16 ~~l~~~~~d~~~~~~lvDvG-----------~~P~l~~~~~Dl-P~Vv~~a~~-----~~ri~~~~gDff~-~~P~--~d 75 (181)
.+++... ....-.+|||+| +.++.+.+.+|. |..++.+.. ..+++++.+|+.+ ++|. .|
T Consensus 13 ~~~~~~~-~~~~~~~vLDiGcG~G~~~~~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~fD 91 (209)
T 2p8j_A 13 RFLKYCN-ESNLDKTVLDCGAGGDLPPLSIFVEDGYKTYGIEISDLQLKKAENFSRENNFKLNISKGDIRKLPFKDESMS 91 (209)
T ss_dssp HHHHHHH-HSSSCSEEEEESCCSSSCTHHHHHHTTCEEEEEECCHHHHHHHHHHHHHHTCCCCEEECCTTSCCSCTTCEE
T ss_pred HHHHHHh-ccCCCCEEEEECCCCCHHHHHHHHhCCCEEEEEECCHHHHHHHHHHHHhcCCceEEEECchhhCCCCCCcee
Confidence 3444432 344557999999 346678999998 566655542 4689999999986 3443 58
Q ss_pred eEeccccchhhhHHhhhhhhhhcCCCccchhhhhhcccccceeeeeeccCChHHHHHHHHHHHHHhccCC----------
Q 036440 76 MIPLRLGYSHIKIMIAFFIRLVVGRGRLHIFSWLNFMKRVINMQIIIHVFGDEESVKILKICREAITSKA---------- 145 (181)
Q Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~iLHdw~D~~~~~iL~~~~~a~~~~g---------- 145 (181)
++ +...++|.++.++..++|++++..++|||
T Consensus 92 ~v---------------------------------------~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~ 132 (209)
T 2p8j_A 92 FV---------------------------------------YSYGTIFHMRKNDVKEAIDEIKRVLKPGGLACINFLTTK 132 (209)
T ss_dssp EE---------------------------------------EECSCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEEETT
T ss_pred EE---------------------------------------EEcChHHhCCHHHHHHHHHHHHHHcCCCcEEEEEEeccc
Confidence 88 77788999988899999999999999999
Q ss_pred --------------------------ccCCHHHHHHHHHhCCCeEEEE
Q 036440 146 --------------------------KLSTEKELESLFVEVHFHHYKI 167 (181)
Q Consensus 146 --------------------------~eRt~~E~~~Ll~~aGf~~~~i 167 (181)
+..|.+|++++++++||.....
T Consensus 133 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~g~~~~~~ 180 (209)
T 2p8j_A 133 DERYNKGEKIGEGEFLQLERGEKVIHSYVSLEEADKYFKDMKVLFKED 180 (209)
T ss_dssp STTTTCSEEEETTEEEECC-CCCEEEEEECHHHHHHTTTTSEEEEEEE
T ss_pred chhccchhhhccccceeccCCCceeEEecCHHHHHHHHhhcCceeeee
Confidence 1237899999999999876543
|
| >2b3t_A Protein methyltransferase HEMK; translation termination, methylation, conformational changes; HET: SAH; 3.10A {Escherichia coli} SCOP: c.66.1.30 PDB: 1t43_A* | Back alignment and structure |
|---|
Probab=98.08 E-value=2e-05 Score=64.88 Aligned_cols=129 Identities=17% Similarity=0.176 Sum_probs=88.8
Q ss_pred cCCCeEEEec------------CCCCceEEEeec-hhhhhhhcc------CCCceEEecCCCCCCCC--cceEeccccch
Q 036440 26 ERLGSLVDVG------------AFPCVKCTEFDQ-PHVVANLLD------TNNLKYLADDFFQSIPP--VCMIPLRLGYS 84 (181)
Q Consensus 26 ~~~~~lvDvG------------~~P~l~~~~~Dl-P~Vv~~a~~------~~ri~~~~gDff~~~P~--~d~~~~~~~~~ 84 (181)
..-.+|+|+| .+|+.+.+.+|. |..++.+.. .++++++.+|+++.+|. .|++..+.-|.
T Consensus 108 ~~~~~vLDlG~GsG~~~~~la~~~~~~~v~~vD~s~~~l~~a~~n~~~~~~~~v~~~~~d~~~~~~~~~fD~Iv~npPy~ 187 (276)
T 2b3t_A 108 EQPCRILDLGTGTGAIALALASERPDCEIIAVDRMPDAVSLAQRNAQHLAIKNIHILQSDWFSALAGQQFAMIVSNPPYI 187 (276)
T ss_dssp SSCCEEEEETCTTSHHHHHHHHHCTTSEEEEECSSHHHHHHHHHHHHHHTCCSEEEECCSTTGGGTTCCEEEEEECCCCB
T ss_pred cCCCEEEEecCCccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCceEEEEcchhhhcccCCccEEEECCCCC
Confidence 3456899999 689999999998 666665542 24899999999987643 68884433221
Q ss_pred hhhHHhhhhhhhhcCCCccchhhhhhcccccceeeeeeccCCh----------HHHHHHHHHHHHHhccCC------ccC
Q 036440 85 HIKIMIAFFIRLVVGRGRLHIFSWLNFMKRVINMQIIIHVFGD----------EESVKILKICREAITSKA------KLS 148 (181)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~iLHdw~D----------~~~~~iL~~~~~a~~~~g------~eR 148 (181)
.... . -+...+++..++ +...++++.+...++||| ...
T Consensus 188 ~~~~-~-------------------------~l~~~v~~~~p~~al~~~~~g~~~~~~~l~~~~~~LkpgG~l~~~~~~~ 241 (276)
T 2b3t_A 188 DEQD-P-------------------------HLQQGDVRFEPLTALVAADSGMADIVHIIEQSRNALVSGGFLLLEHGWQ 241 (276)
T ss_dssp CTTC-H-------------------------HHHSSGGGSSCSTTTBCHHHHTHHHHHHHHHHGGGEEEEEEEEEECCSS
T ss_pred Cccc-c-------------------------ccChhhhhcCcHHHHcCCCcHHHHHHHHHHHHHHhcCCCCEEEEEECch
Confidence 1100 0 012233332221 345789999999999999 567
Q ss_pred CHHHHHHHHHhCCCeEEEEEE-cCCCCeEEEEE
Q 036440 149 TEKELESLFVEVHFHHYKITP-LFGLPSLIEVY 180 (181)
Q Consensus 149 t~~E~~~Ll~~aGf~~~~i~~-~~~~~~viE~~ 180 (181)
+.++++++++++||+.+++.+ ..|...++-++
T Consensus 242 ~~~~~~~~l~~~Gf~~v~~~~d~~g~~r~~~~~ 274 (276)
T 2b3t_A 242 QGEAVRQAFILAGYHDVETCRDYGDNERVTLGR 274 (276)
T ss_dssp CHHHHHHHHHHTTCTTCCEEECTTSSEEEEEEE
T ss_pred HHHHHHHHHHHCCCcEEEEEecCCCCCcEEEEE
Confidence 889999999999999887775 56666666554
|
| >3q87_B N6 adenine specific DNA methylase; SAM-methyltransferase, methyltransferase, methylation, trans activator-transferase complex; HET: SAM; 2.00A {Encephalitozoon cuniculi} | Back alignment and structure |
|---|
Probab=98.06 E-value=0.00012 Score=56.27 Aligned_cols=119 Identities=10% Similarity=0.030 Sum_probs=83.2
Q ss_pred HHHHHHhhhhh--cCCCeEEEec----------CCCCceEEEeec-hhhhhhhccCCCceEEecCCCCCCCC--cceEec
Q 036440 15 SLALKYCKQIF--ERLGSLVDVG----------AFPCVKCTEFDQ-PHVVANLLDTNNLKYLADDFFQSIPP--VCMIPL 79 (181)
Q Consensus 15 ~~~l~~~~~d~--~~~~~lvDvG----------~~P~l~~~~~Dl-P~Vv~~a~~~~ri~~~~gDff~~~P~--~d~~~~ 79 (181)
..+++.. +. ..-.+++|+| +--. +.+.+|+ |..++. .++++++.+|+++.++. .|++
T Consensus 11 ~~l~~~l--~~~~~~~~~vLD~GcG~G~~~~~l~~~~-~v~gvD~s~~~~~~---~~~~~~~~~d~~~~~~~~~fD~i-- 82 (170)
T 3q87_B 11 YTLMDAL--EREGLEMKIVLDLGTSTGVITEQLRKRN-TVVSTDLNIRALES---HRGGNLVRADLLCSINQESVDVV-- 82 (170)
T ss_dssp HHHHHHH--HHHTCCSCEEEEETCTTCHHHHHHTTTS-EEEEEESCHHHHHT---CSSSCEEECSTTTTBCGGGCSEE--
T ss_pred HHHHHHH--HhhcCCCCeEEEeccCccHHHHHHHhcC-cEEEEECCHHHHhc---ccCCeEEECChhhhcccCCCCEE--
Confidence 4445554 23 3456999999 2222 8899998 445554 67899999999987663 5887
Q ss_pred cccchhhhHHhhhhhhhhcCCCccchhhhhhcccccceeeeeeccCChH-------HHHHHHHHHHHHhccCC-------
Q 036440 80 RLGYSHIKIMIAFFIRLVVGRGRLHIFSWLNFMKRVINMQIIIHVFGDE-------ESVKILKICREAITSKA------- 145 (181)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~iLHdw~D~-------~~~~iL~~~~~a~~~~g------- 145 (181)
+..-..|..++. +..++++.+...+ |+|
T Consensus 83 -------------------------------------~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-pgG~l~~~~~ 124 (170)
T 3q87_B 83 -------------------------------------VFNPPYVPDTDDPIIGGGYLGREVIDRFVDAV-TVGMLYLLVI 124 (170)
T ss_dssp -------------------------------------EECCCCBTTCCCTTTBCCGGGCHHHHHHHHHC-CSSEEEEEEE
T ss_pred -------------------------------------EECCCCccCCccccccCCcchHHHHHHHHhhC-CCCEEEEEEe
Confidence 444444543332 4567888888888 888
Q ss_pred ccCCHHHHHHHHHhCCCeEEEEEEc-CCCCeEEEE
Q 036440 146 KLSTEKELESLFVEVHFHHYKITPL-FGLPSLIEV 179 (181)
Q Consensus 146 ~eRt~~E~~~Ll~~aGf~~~~i~~~-~~~~~viE~ 179 (181)
...+.+++.++++++||+.+.+... .+.+.++..
T Consensus 125 ~~~~~~~l~~~l~~~gf~~~~~~~~~~~~e~~~~~ 159 (170)
T 3q87_B 125 EANRPKEVLARLEERGYGTRILKVRKILGETVYII 159 (170)
T ss_dssp GGGCHHHHHHHHHHTTCEEEEEEEEECSSSEEEEE
T ss_pred cCCCHHHHHHHHHHCCCcEEEEEeeccCCceEEEE
Confidence 5578899999999999999888743 555655543
|
| >1vlm_A SAM-dependent methyltransferase; possible histamine methyltransferase, structural genomics, JCSG, protein struc initiative, PSI; 2.20A {Thermotoga maritima} SCOP: c.66.1.41 | Back alignment and structure |
|---|
Probab=98.02 E-value=5e-05 Score=59.82 Aligned_cols=102 Identities=14% Similarity=0.129 Sum_probs=74.1
Q ss_pred CCeEEEecCCCC------ceEEEeec-hhhhhhhccCCCceEEecCCCC-CCCC--cceEeccccchhhhHHhhhhhhhh
Q 036440 28 LGSLVDVGAFPC------VKCTEFDQ-PHVVANLLDTNNLKYLADDFFQ-SIPP--VCMIPLRLGYSHIKIMIAFFIRLV 97 (181)
Q Consensus 28 ~~~lvDvG~~P~------l~~~~~Dl-P~Vv~~a~~~~ri~~~~gDff~-~~P~--~d~~~~~~~~~~~~~~~~~~~~~~ 97 (181)
-.+|||+|.-.+ .+.+.+|. |..++.+... +++++.+|+.+ +.|. .|++
T Consensus 48 ~~~vLDiG~G~G~~~~~l~~~~~vD~s~~~~~~a~~~-~~~~~~~d~~~~~~~~~~fD~v-------------------- 106 (219)
T 1vlm_A 48 EGRGVEIGVGTGRFAVPLKIKIGVEPSERMAEIARKR-GVFVLKGTAENLPLKDESFDFA-------------------- 106 (219)
T ss_dssp SSCEEEETCTTSTTHHHHTCCEEEESCHHHHHHHHHT-TCEEEECBTTBCCSCTTCEEEE--------------------
T ss_pred CCcEEEeCCCCCHHHHHHHHHhccCCCHHHHHHHHhc-CCEEEEcccccCCCCCCCeeEE--------------------
Confidence 679999991111 01188888 5666666544 89999999865 2333 5888
Q ss_pred cCCCccchhhhhhcccccceeeeeeccCChHHHHHHHHHHHHHhccCC------------------------------cc
Q 036440 98 VGRGRLHIFSWLNFMKRVINMQIIIHVFGDEESVKILKICREAITSKA------------------------------KL 147 (181)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~~l~~iLHdw~D~~~~~iL~~~~~a~~~~g------------------------------~e 147 (181)
++..+||.++|. .++|++++..++||| +.
T Consensus 107 -------------------~~~~~l~~~~~~--~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (219)
T 1vlm_A 107 -------------------LMVTTICFVDDP--ERALKEAYRILKKGGYLIVGIVDRESFLGREYEKNKEKSVFYKNARF 165 (219)
T ss_dssp -------------------EEESCGGGSSCH--HHHHHHHHHHEEEEEEEEEEEECSSSHHHHHHHHTTTC-CCSTTCCC
T ss_pred -------------------EEcchHhhccCH--HHHHHHHHHHcCCCcEEEEEEeCCccHHHHHHHHHhcCcchhccccc
Confidence 777788877654 468888888888887 22
Q ss_pred CCHHHHHHHHHhCCCeEEEEEEcC
Q 036440 148 STEKELESLFVEVHFHHYKITPLF 171 (181)
Q Consensus 148 Rt~~E~~~Ll~~aGf~~~~i~~~~ 171 (181)
.|.+++.++|+++||+++++....
T Consensus 166 ~~~~~l~~~l~~~Gf~~~~~~~~~ 189 (219)
T 1vlm_A 166 FSTEELMDLMRKAGFEEFKVVQTL 189 (219)
T ss_dssp CCHHHHHHHHHHTTCEEEEEEEEC
T ss_pred CCHHHHHHHHHHCCCeEEEEeccc
Confidence 589999999999999999887543
|
| >2xvm_A Tellurite resistance protein TEHB; antibiotic resistance, transferase; HET: SAH; 1.48A {Escherichia coli} PDB: 2xva_A* 4dq0_A* 2i6g_A* | Back alignment and structure |
|---|
Probab=98.01 E-value=3.2e-05 Score=58.86 Aligned_cols=112 Identities=15% Similarity=0.146 Sum_probs=87.1
Q ss_pred HHHHHHhhhhhcCCCeEEEec-----------CCCCceEEEeec-hhhhhhhcc------CCCceEEecCCCCC-CCC-c
Q 036440 15 SLALKYCKQIFERLGSLVDVG-----------AFPCVKCTEFDQ-PHVVANLLD------TNNLKYLADDFFQS-IPP-V 74 (181)
Q Consensus 15 ~~~l~~~~~d~~~~~~lvDvG-----------~~P~l~~~~~Dl-P~Vv~~a~~------~~ri~~~~gDff~~-~P~-~ 74 (181)
+.+++.. +...-.+|+|+| +. +.+.+.+|. |..++.+.. .++++++.+|+.+. .+. .
T Consensus 22 ~~l~~~~--~~~~~~~vLdiG~G~G~~~~~l~~~-~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~~ 98 (199)
T 2xvm_A 22 SEVLEAV--KVVKPGKTLDLGCGNGRNSLYLAAN-GYDVDAWDKNAMSIANVERIKSIENLDNLHTRVVDLNNLTFDRQY 98 (199)
T ss_dssp HHHHHHT--TTSCSCEEEEETCTTSHHHHHHHHT-TCEEEEEESCHHHHHHHHHHHHHHTCTTEEEEECCGGGCCCCCCE
T ss_pred HHHHHHh--hccCCCeEEEEcCCCCHHHHHHHHC-CCeEEEEECCHHHHHHHHHHHHhCCCCCcEEEEcchhhCCCCCCc
Confidence 4566666 455567999999 22 568999998 666665542 24799999999863 222 5
Q ss_pred ceEeccccchhhhHHhhhhhhhhcCCCccchhhhhhcccccceeeeeeccCChHHHHHHHHHHHHHhccCC---------
Q 036440 75 CMIPLRLGYSHIKIMIAFFIRLVVGRGRLHIFSWLNFMKRVINMQIIIHVFGDEESVKILKICREAITSKA--------- 145 (181)
Q Consensus 75 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~iLHdw~D~~~~~iL~~~~~a~~~~g--------- 145 (181)
|++ +...++|.+++++..++|++++..++|||
T Consensus 99 D~v---------------------------------------~~~~~l~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~~ 139 (199)
T 2xvm_A 99 DFI---------------------------------------LSTVVLMFLEAKTIPGLIANMQRCTKPGGYNLIVAAMD 139 (199)
T ss_dssp EEE---------------------------------------EEESCGGGSCGGGHHHHHHHHHHTEEEEEEEEEEEEBC
T ss_pred eEE---------------------------------------EEcchhhhCCHHHHHHHHHHHHHhcCCCeEEEEEEeec
Confidence 888 88899999998899999999999999999
Q ss_pred -----------ccCCHHHHHHHHHhCCCeEEEEEEc
Q 036440 146 -----------KLSTEKELESLFVEVHFHHYKITPL 170 (181)
Q Consensus 146 -----------~eRt~~E~~~Ll~~aGf~~~~i~~~ 170 (181)
...|.+|++++|++ |++++....
T Consensus 140 ~~~~~~~~~~~~~~~~~~l~~~~~~--f~~~~~~~~ 173 (199)
T 2xvm_A 140 TADYPCTVGFPFAFKEGELRRYYEG--WERVKYNED 173 (199)
T ss_dssp CSSSCCCSCCSCCBCTTHHHHHTTT--SEEEEEECC
T ss_pred cCCcCCCCCCCCccCHHHHHHHhcC--CeEEEeccc
Confidence 13489999999987 999887643
|
| >1dus_A MJ0882; hypothetical protein, methanococcus jannaschii, structural genomics, BSGC structure funded by NIH; 1.80A {Methanocaldococcus jannaschii} SCOP: c.66.1.4 | Back alignment and structure |
|---|
Probab=97.95 E-value=7.3e-05 Score=56.15 Aligned_cols=122 Identities=14% Similarity=0.222 Sum_probs=87.0
Q ss_pred HHHHHHhhhhhcCCCeEEEec-----------CCCCceEEEeec-hhhhhhhcc-------CC-CceEEecCCCCCCCC-
Q 036440 15 SLALKYCKQIFERLGSLVDVG-----------AFPCVKCTEFDQ-PHVVANLLD-------TN-NLKYLADDFFQSIPP- 73 (181)
Q Consensus 15 ~~~l~~~~~d~~~~~~lvDvG-----------~~P~l~~~~~Dl-P~Vv~~a~~-------~~-ri~~~~gDff~~~P~- 73 (181)
..+++.. ....-.+|+|+| +. ..+.+.+|. |..++.+.. .+ |++++.+|+.+..+.
T Consensus 42 ~~l~~~~--~~~~~~~vLdiG~G~G~~~~~~~~~-~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~~~~ 118 (194)
T 1dus_A 42 KILVENV--VVDKDDDILDLGCGYGVIGIALADE-VKSTTMADINRRAIKLAKENIKLNNLDNYDIRVVHSDLYENVKDR 118 (194)
T ss_dssp HHHHHHC--CCCTTCEEEEETCTTSHHHHHHGGG-SSEEEEEESCHHHHHHHHHHHHHTTCTTSCEEEEECSTTTTCTTS
T ss_pred HHHHHHc--ccCCCCeEEEeCCCCCHHHHHHHHc-CCeEEEEECCHHHHHHHHHHHHHcCCCccceEEEECchhcccccC
Confidence 5566666 455667999999 33 678999998 666665532 22 599999999986654
Q ss_pred -cceEeccccchhhhHHhhhhhhhhcCCCccchhhhhhcccccceeeeeeccCChHHHHHHHHHHHHHhccCC-------
Q 036440 74 -VCMIPLRLGYSHIKIMIAFFIRLVVGRGRLHIFSWLNFMKRVINMQIIIHVFGDEESVKILKICREAITSKA------- 145 (181)
Q Consensus 74 -~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~iLHdw~D~~~~~iL~~~~~a~~~~g------- 145 (181)
.|++ ++...+| ++.+...++|+.+...++|+|
T Consensus 119 ~~D~v---------------------------------------~~~~~~~-~~~~~~~~~l~~~~~~L~~gG~l~~~~~ 158 (194)
T 1dus_A 119 KYNKI---------------------------------------ITNPPIR-AGKEVLHRIIEEGKELLKDNGEIWVVIQ 158 (194)
T ss_dssp CEEEE---------------------------------------EECCCST-TCHHHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred CceEE---------------------------------------EECCCcc-cchhHHHHHHHHHHHHcCCCCEEEEEEC
Confidence 5877 5555555 456777899999999999999
Q ss_pred ccCCHHHHHHHHHhCCCeEEEEEEcCCCCeEEEEE
Q 036440 146 KLSTEKELESLFVEVHFHHYKITPLFGLPSLIEVY 180 (181)
Q Consensus 146 ~eRt~~E~~~Ll~~aGf~~~~i~~~~~~~~viE~~ 180 (181)
.....+++.+.+++. |..+++........++.+.
T Consensus 159 ~~~~~~~~~~~l~~~-~~~~~~~~~~~~~~~~~~~ 192 (194)
T 1dus_A 159 TKQGAKSLAKYMKDV-FGNVETVTIKGGYRVLKSK 192 (194)
T ss_dssp STHHHHHHHHHHHHH-HSCCEEEEEETTEEEEEEE
T ss_pred CCCChHHHHHHHHHH-hcceEEEecCCcEEEEEEe
Confidence 333456688889888 7777776655544555543
|
| >1pjz_A Thiopurine S-methyltransferase; polymorphism, S-adenosylmethionine, drug metabolism; NMR {Pseudomonas syringae PV} SCOP: c.66.1.36 | Back alignment and structure |
|---|
Probab=97.94 E-value=2.1e-05 Score=62.13 Aligned_cols=107 Identities=6% Similarity=0.003 Sum_probs=82.1
Q ss_pred hcCCCeEEEec----------CCCCceEEEeec-hhhhhhhcc------------------CCCceEEecCCCCCCC---
Q 036440 25 FERLGSLVDVG----------AFPCVKCTEFDQ-PHVVANLLD------------------TNNLKYLADDFFQSIP--- 72 (181)
Q Consensus 25 ~~~~~~lvDvG----------~~P~l~~~~~Dl-P~Vv~~a~~------------------~~ri~~~~gDff~~~P--- 72 (181)
...-.+|+|+| +-.+.+.+.+|+ |..++.+.. ..+++++.+|+++--+
T Consensus 20 ~~~~~~vLD~GCG~G~~~~~la~~g~~V~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~l~~~~~ 99 (203)
T 1pjz_A 20 VVPGARVLVPLCGKSQDMSWLSGQGYHVVGAELSEAAVERYFTERGEQPHITSQGDFKVYAAPGIEIWCGDFFALTARDI 99 (203)
T ss_dssp CCTTCEEEETTTCCSHHHHHHHHHCCEEEEEEECHHHHHHHHHHHCSCSEEEEETTEEEEECSSSEEEEECCSSSTHHHH
T ss_pred cCCCCEEEEeCCCCcHhHHHHHHCCCeEEEEeCCHHHHHHHHHHccCCcccccccccccccCCccEEEECccccCCcccC
Confidence 34567999999 212558999998 456655531 3589999999987322
Q ss_pred -CcceEeccccchhhhHHhhhhhhhhcCCCccchhhhhhcccccceeeeeeccCChHHHHHHHHHHHHHhccCCc-----
Q 036440 73 -PVCMIPLRLGYSHIKIMIAFFIRLVVGRGRLHIFSWLNFMKRVINMQIIIHVFGDEESVKILKICREAITSKAK----- 146 (181)
Q Consensus 73 -~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~iLHdw~D~~~~~iL~~~~~a~~~~g~----- 146 (181)
..|++ +...++|..++++..+.++.++..++|||+
T Consensus 100 ~~fD~v---------------------------------------~~~~~l~~l~~~~~~~~l~~~~r~LkpgG~~~l~~ 140 (203)
T 1pjz_A 100 GHCAAF---------------------------------------YDRAAMIALPADMRERYVQHLEALMPQACSGLLIT 140 (203)
T ss_dssp HSEEEE---------------------------------------EEESCGGGSCHHHHHHHHHHHHHHSCSEEEEEEEE
T ss_pred CCEEEE---------------------------------------EECcchhhCCHHHHHHHHHHHHHHcCCCcEEEEEE
Confidence 25777 677788888888888999999999999993
Q ss_pred -------------cCCHHHHHHHHHhCCCeEEEEEEcC
Q 036440 147 -------------LSTEKELESLFVEVHFHHYKITPLF 171 (181)
Q Consensus 147 -------------eRt~~E~~~Ll~~aGf~~~~i~~~~ 171 (181)
..|.+|+++++++ ||++..+....
T Consensus 141 ~~~~~~~~~~~~~~~~~~el~~~~~~-gf~i~~~~~~~ 177 (203)
T 1pjz_A 141 LEYDQALLEGPPFSVPQTWLHRVMSG-NWEVTKVGGQD 177 (203)
T ss_dssp ESSCSSSSSSCCCCCCHHHHHHTSCS-SEEEEEEEESS
T ss_pred EecCccccCCCCCCCCHHHHHHHhcC-CcEEEEecccc
Confidence 2479999999999 99988776543
|
| >2i62_A Nicotinamide N-methyltransferase; structural genomics, structural genomics consortium, SGC; HET: SAH; 1.80A {Mus musculus} PDB: 2iip_A* 3rod_A* | Back alignment and structure |
|---|
Probab=97.91 E-value=4.3e-05 Score=60.82 Aligned_cols=55 Identities=4% Similarity=-0.106 Sum_probs=44.2
Q ss_pred eeeeeeccCC--hHHHHHHHHHHHHHhccCC----------------------ccCCHHHHHHHHHhCCCeEEEEEEcC
Q 036440 117 NMQIIIHVFG--DEESVKILKICREAITSKA----------------------KLSTEKELESLFVEVHFHHYKITPLF 171 (181)
Q Consensus 117 ~l~~iLHdw~--D~~~~~iL~~~~~a~~~~g----------------------~eRt~~E~~~Ll~~aGf~~~~i~~~~ 171 (181)
+...+||... .++-.++|++++..++||| ...+.+++.++|+++||+++++...+
T Consensus 162 ~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~~~~~~~~ 240 (265)
T 2i62_A 162 LSTLCLDAACPDLPAYRTALRNLGSLLKPGGFLVMVDALKSSYYMIGEQKFSSLPLGWETVRDAVEEAGYTIEQFEVIS 240 (265)
T ss_dssp EEESCHHHHCSSHHHHHHHHHHHHTTEEEEEEEEEEEESSCCEEEETTEEEECCCCCHHHHHHHHHHTTCEEEEEEEEC
T ss_pred EEhhhhhhhcCChHHHHHHHHHHHhhCCCCcEEEEEecCCCceEEcCCccccccccCHHHHHHHHHHCCCEEEEEEEec
Confidence 7788888432 3366789999999999998 12478899999999999999887554
|
| >1wzn_A SAM-dependent methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: SAH; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.43 | Back alignment and structure |
|---|
Probab=97.85 E-value=0.00016 Score=57.53 Aligned_cols=52 Identities=10% Similarity=0.164 Sum_probs=36.5
Q ss_pred CCCeEEEec----------CCCCceEEEeec-hhhhhhhcc-----CCCceEEecCCCCC-CCC-cceEe
Q 036440 27 RLGSLVDVG----------AFPCVKCTEFDQ-PHVVANLLD-----TNNLKYLADDFFQS-IPP-VCMIP 78 (181)
Q Consensus 27 ~~~~lvDvG----------~~P~l~~~~~Dl-P~Vv~~a~~-----~~ri~~~~gDff~~-~P~-~d~~~ 78 (181)
...+|||+| +-.+.+.+.+|+ |..++.+.. ..+++++.+|+.+. .+. .|++.
T Consensus 41 ~~~~vLDlGcG~G~~~~~l~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~~~fD~v~ 110 (252)
T 1wzn_A 41 EVRRVLDLACGTGIPTLELAERGYEVVGLDLHEEMLRVARRKAKERNLKIEFLQGDVLEIAFKNEFDAVT 110 (252)
T ss_dssp CCCEEEEETCTTCHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCCCEEEESCGGGCCCCSCEEEEE
T ss_pred CCCEEEEeCCCCCHHHHHHHHCCCeEEEEECCHHHHHHHHHHHHhcCCceEEEECChhhcccCCCccEEE
Confidence 447999999 222568999998 666665542 34799999999863 333 57773
|
| >3giw_A Protein of unknown function DUF574; rossmann-fold protein, structural genomics, joint center for structural genomics, JCSG; HET: MSE UNL; 1.45A {Streptomyces avermitilis} PDB: 3go4_A* | Back alignment and structure |
|---|
Probab=97.84 E-value=6.6e-05 Score=64.70 Aligned_cols=98 Identities=22% Similarity=0.387 Sum_probs=74.3
Q ss_pred CCCeEEEec---------------CCCCceEEEeec-hhhhhhhcc------CCCceEEecCCCCC---C--CC----cc
Q 036440 27 RLGSLVDVG---------------AFPCVKCTEFDQ-PHVVANLLD------TNNLKYLADDFFQS---I--PP----VC 75 (181)
Q Consensus 27 ~~~~lvDvG---------------~~P~l~~~~~Dl-P~Vv~~a~~------~~ri~~~~gDff~~---~--P~----~d 75 (181)
+.+.+||+| ..|+.+.+.+|. |.+++.++. ..+++++.+|+.+. + |. .|
T Consensus 78 g~~q~LDLGcG~pT~~~~~~la~~~~P~arVv~VD~sp~mLa~Ar~~l~~~~~~~~~~v~aD~~~~~~~l~~~~~~~~~D 157 (277)
T 3giw_A 78 GIRQFLDIGTGIPTSPNLHEIAQSVAPESRVVYVDNDPIVLTLSQGLLASTPEGRTAYVEADMLDPASILDAPELRDTLD 157 (277)
T ss_dssp CCCEEEEESCCSCCSSCHHHHHHHHCTTCEEEEEECCHHHHHTTHHHHCCCSSSEEEEEECCTTCHHHHHTCHHHHTTCC
T ss_pred CCCEEEEeCCCCCcccHHHHHHHHHCCCCEEEEEeCChHHHHHHHHHhccCCCCcEEEEEecccChhhhhcccccccccC
Confidence 668999999 359999999999 888887652 24799999999763 1 10 11
Q ss_pred -----eEeccccchhhhHHhhhhhhhhcCCCccchhhhhhcccccceeeeeeccCChHH-HHHHHHHHHHHhccCC----
Q 036440 76 -----MIPLRLGYSHIKIMIAFFIRLVVGRGRLHIFSWLNFMKRVINMQIIIHVFGDEE-SVKILKICREAITSKA---- 145 (181)
Q Consensus 76 -----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~iLHdw~D~~-~~~iL~~~~~a~~~~g---- 145 (181)
.+ ++..+||-.+|++ ...+|+.++.+++|||
T Consensus 158 ~~~p~av---------------------------------------~~~avLH~l~d~~~p~~~l~~l~~~L~PGG~Lvl 198 (277)
T 3giw_A 158 LTRPVAL---------------------------------------TVIAIVHFVLDEDDAVGIVRRLLEPLPSGSYLAM 198 (277)
T ss_dssp TTSCCEE---------------------------------------EEESCGGGSCGGGCHHHHHHHHHTTSCTTCEEEE
T ss_pred cCCcchH---------------------------------------HhhhhHhcCCchhhHHHHHHHHHHhCCCCcEEEE
Confidence 23 6677788777766 4678888888888888
Q ss_pred --------------------------ccCCHHHHHHHHHhCCCeEE
Q 036440 146 --------------------------KLSTEKELESLFVEVHFHHY 165 (181)
Q Consensus 146 --------------------------~eRt~~E~~~Ll~~aGf~~~ 165 (181)
+.||.+|++++|. ||.++
T Consensus 199 s~~~~d~~p~~~~~~~~~~~~~g~p~~~rs~~ei~~~f~--Glelv 242 (277)
T 3giw_A 199 SIGTAEFAPQEVGRVAREYAARNMPMRLRTHAEAEEFFE--GLELV 242 (277)
T ss_dssp EEECCTTSHHHHHHHHHHHHHTTCCCCCCCHHHHHHTTT--TSEEC
T ss_pred EeccCCCCHHHHHHHHHHHHhcCCCCccCCHHHHHHHhC--CCccc
Confidence 5689999999994 99864
|
| >2g72_A Phenylethanolamine N-methyltransferase; HET: SAM F21; 2.00A {Homo sapiens} SCOP: c.66.1.15 PDB: 1yz3_A* 2an4_A* 2an5_A* 2g70_A* 2g71_A* 2an3_A* 2g8n_A* 2ony_A* 3hcb_A* 3hcc_A* 3hcd_A* 3hcf_A* 3kpj_A* 3kpu_A* 3kpv_A* 3kpw_A* 3kpy_A* 3kqm_A* 3kqo_A* 3kqp_A* ... | Back alignment and structure |
|---|
Probab=97.79 E-value=6.2e-05 Score=61.83 Aligned_cols=54 Identities=7% Similarity=0.103 Sum_probs=44.0
Q ss_pred eeeeeeccCChH--HHHHHHHHHHHHhccCC----------------------ccCCHHHHHHHHHhCCCeEEEEEEc
Q 036440 117 NMQIIIHVFGDE--ESVKILKICREAITSKA----------------------KLSTEKELESLFVEVHFHHYKITPL 170 (181)
Q Consensus 117 ~l~~iLHdw~D~--~~~~iL~~~~~a~~~~g----------------------~eRt~~E~~~Ll~~aGf~~~~i~~~ 170 (181)
+...+||...++ +-.++|++++..++||| ...|.++|.++|+++||+++++...
T Consensus 179 ~~~~~l~~~~~~~~~~~~~l~~~~r~LkpGG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~aGf~~~~~~~~ 256 (289)
T 2g72_A 179 VSAFCLEAVSPDLASFQRALDHITTLLRPGGHLLLIGALEESWYLAGEARLTVVPVSEEEVREALVRSGYKVRDLRTY 256 (289)
T ss_dssp EEESCHHHHCSSHHHHHHHHHHHHTTEEEEEEEEEEEEESCCEEEETTEEEECCCCCHHHHHHHHHHTTEEEEEEEEE
T ss_pred EehhhhhhhcCCHHHHHHHHHHHHHhcCCCCEEEEEEecCcceEEcCCeeeeeccCCHHHHHHHHHHcCCeEEEeeEe
Confidence 777788774433 67789999999999999 1358999999999999999887643
|
| >2a14_A Indolethylamine N-methyltransferase; SGC,INMT, structural genomics, structural genomics consortium; HET: SAH; 1.70A {Homo sapiens} SCOP: c.66.1.15 | Back alignment and structure |
|---|
Probab=97.78 E-value=5.5e-05 Score=61.88 Aligned_cols=54 Identities=7% Similarity=0.017 Sum_probs=44.1
Q ss_pred eeeeeeccC--ChHHHHHHHHHHHHHhccCC--------c--------------cCCHHHHHHHHHhCCCeEEEEEEc
Q 036440 117 NMQIIIHVF--GDEESVKILKICREAITSKA--------K--------------LSTEKELESLFVEVHFHHYKITPL 170 (181)
Q Consensus 117 ~l~~iLHdw--~D~~~~~iL~~~~~a~~~~g--------~--------------eRt~~E~~~Ll~~aGf~~~~i~~~ 170 (181)
+...+||.- +.++-.++|++++..|+||| . ..|.+|+.++|+++||+++++...
T Consensus 161 ~~~~~l~~i~~~~~~~~~~l~~i~r~LKPGG~li~~~~~~~~~~~~g~~~~~~~~~~~~~l~~~l~~aGF~i~~~~~~ 238 (263)
T 2a14_A 161 LTLLAMECACCSLDAYRAALCNLASLLKPGGHLVTTVTLRLPSYMVGKREFSCVALEKGEVEQAVLDAGFDIEQLLHS 238 (263)
T ss_dssp EEESCHHHHCSSHHHHHHHHHHHHTTEEEEEEEEEEEESSCCEEEETTEEEECCCCCHHHHHHHHHHTTEEEEEEEEE
T ss_pred eehHHHHHhcCCHHHHHHHHHHHHHHcCCCcEEEEEEeecCccceeCCeEeeccccCHHHHHHHHHHCCCEEEEEeec
Confidence 788888752 23566789999999999999 1 138999999999999999988754
|
| >2yqz_A Hypothetical protein TTHA0223; RNA methyltransferase, SAM, structural genomics, NPPSFA; HET: SAM; 1.80A {Thermus thermophilus} PDB: 2yr0_A | Back alignment and structure |
|---|
Probab=97.77 E-value=0.00016 Score=57.40 Aligned_cols=127 Identities=9% Similarity=0.026 Sum_probs=68.7
Q ss_pred hcCCCeEEEec-----------CCCCceEEEeec-hhhhhhhcc-----CCCceEEecCCCCC-CCC--cceEeccccch
Q 036440 25 FERLGSLVDVG-----------AFPCVKCTEFDQ-PHVVANLLD-----TNNLKYLADDFFQS-IPP--VCMIPLRLGYS 84 (181)
Q Consensus 25 ~~~~~~lvDvG-----------~~P~l~~~~~Dl-P~Vv~~a~~-----~~ri~~~~gDff~~-~P~--~d~~~~~~~~~ 84 (181)
...-.+|+|+| +. +.+.+.+|. |..++.+.. .++++++.+|+.+. +|. .|++.....+.
T Consensus 37 ~~~~~~vLDiG~G~G~~~~~l~~~-~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~ 115 (263)
T 2yqz_A 37 KGEEPVFLELGVGTGRIALPLIAR-GYRYIALDADAAMLEVFRQKIAGVDRKVQVVQADARAIPLPDESVHGVIVVHLWH 115 (263)
T ss_dssp SSSCCEEEEETCTTSTTHHHHHTT-TCEEEEEESCHHHHHHHHHHTTTSCTTEEEEESCTTSCCSCTTCEEEEEEESCGG
T ss_pred CCCCCEEEEeCCcCCHHHHHHHHC-CCEEEEEECCHHHHHHHHHHhhccCCceEEEEcccccCCCCCCCeeEEEECCchh
Confidence 45567999999 22 568899998 556655532 47899999999652 333 58874443333
Q ss_pred hhhHHhhhh---hhh-hcCCCccchhhhhhcccccceeeeeeccCChHH---HHHHHHHHHHHhcc----CCccCCHHHH
Q 036440 85 HIKIMIAFF---IRL-VVGRGRLHIFSWLNFMKRVINMQIIIHVFGDEE---SVKILKICREAITS----KAKLSTEKEL 153 (181)
Q Consensus 85 ~~~~~~~~~---~~~-~~~~~~~~~~~~~~~~~~~~~l~~iLHdw~D~~---~~~iL~~~~~a~~~----~g~eRt~~E~ 153 (181)
++.-..+++ .|. .+|+ .+++. ..+.++.. ..+.++.....+.. .....+.+++
T Consensus 116 ~~~~~~~~l~~~~~~L~pgG--------------~l~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 179 (263)
T 2yqz_A 116 LVPDWPKVLAEAIRVLKPGG--------------ALLEG--WDQAEASPEWTLQERWRAFAAEEGFPVERGLHAKRLKEV 179 (263)
T ss_dssp GCTTHHHHHHHHHHHEEEEE--------------EEEEE--EEEECCCHHHHHHHHHHHHHHHHTCCCCCCHHHHHHHHH
T ss_pred hcCCHHHHHHHHHHHCCCCc--------------EEEEE--ecCCCccHHHHHHHHHHHHHHHhCCCcccccccCCHHHH
Confidence 331111111 111 2222 11111 11111011 23344444333321 1145678899
Q ss_pred HHHHHhCCCeEEEEE
Q 036440 154 ESLFVEVHFHHYKIT 168 (181)
Q Consensus 154 ~~Ll~~aGf~~~~i~ 168 (181)
.++|+++||+++.+.
T Consensus 180 ~~~l~~~Gf~~~~~~ 194 (263)
T 2yqz_A 180 EEALRRLGLKPRTRE 194 (263)
T ss_dssp HHHHHHTTCCCEEEE
T ss_pred HHHHHHcCCCcceEE
Confidence 999999999977653
|
| >3thr_A Glycine N-methyltransferase; GNMT, folate, methyltransferase binding, liver cytosol, transferase-transferase inhibitor C; HET: C2F TAM; 2.00A {Rattus norvegicus} SCOP: c.66.1.5 PDB: 3ths_A* 1xva_A* 1d2c_A 1kia_A* 1nbh_A* 1bhj_A* 2idj_A 2idk_A* 1d2g_A 1d2h_A* 1nbi_A* 1r8x_A 1r8y_A 1r74_A* 2azt_A* | Back alignment and structure |
|---|
Probab=97.76 E-value=0.00011 Score=59.85 Aligned_cols=82 Identities=11% Similarity=0.021 Sum_probs=61.1
Q ss_pred hcCCCeEEEec----------CCCCceEEEeec-hhhhhhhcc----------CCCceEEecCCCCC----CCC--cceE
Q 036440 25 FERLGSLVDVG----------AFPCVKCTEFDQ-PHVVANLLD----------TNNLKYLADDFFQS----IPP--VCMI 77 (181)
Q Consensus 25 ~~~~~~lvDvG----------~~P~l~~~~~Dl-P~Vv~~a~~----------~~ri~~~~gDff~~----~P~--~d~~ 77 (181)
.....+|||+| +--+.+.+.+|+ |..++.+.. ..++.+..+|+.+. .|. .|++
T Consensus 55 ~~~~~~vLDiGcG~G~~~~~l~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~fD~V 134 (293)
T 3thr_A 55 QHGCHRVLDVACGTGVDSIMLVEEGFSVTSVDASDKMLKYALKERWNRRKEPAFDKWVIEEANWLTLDKDVPAGDGFDAV 134 (293)
T ss_dssp HTTCCEEEETTCTTSHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTTSHHHHTCEEEECCGGGHHHHSCCTTCEEEE
T ss_pred ccCCCEEEEecCCCCHHHHHHHHCCCeEEEEECCHHHHHHHHHhhhhcccccccceeeEeecChhhCccccccCCCeEEE
Confidence 34557999999 112448899998 556655531 25788999998762 232 6888
Q ss_pred eccccchhhhHHhhhhhhhhcCCCccchhhhhhcccccceee-eeeccCCh-----HHHHHHHHHHHHHhccCC
Q 036440 78 PLRLGYSHIKIMIAFFIRLVVGRGRLHIFSWLNFMKRVINMQ-IIIHVFGD-----EESVKILKICREAITSKA 145 (181)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~iLHdw~D-----~~~~~iL~~~~~a~~~~g 145 (181)
+.. .++|.+.| ++..++|++++..++|||
T Consensus 135 ---------------------------------------~~~g~~l~~~~~~~~~~~~~~~~l~~~~~~LkpgG 169 (293)
T 3thr_A 135 ---------------------------------------ICLGNSFAHLPDSKGDQSEHRLALKNIASMVRPGG 169 (293)
T ss_dssp ---------------------------------------EECTTCGGGSCCSSSSSHHHHHHHHHHHHTEEEEE
T ss_pred ---------------------------------------EEcChHHhhcCccccCHHHHHHHHHHHHHHcCCCe
Confidence 666 78888888 888999999999999999
|
| >3mq2_A 16S rRNA methyltransferase; methyltranferase, ribosomal, antibiotic resistance, aminoglycoside, S-adenosyl-L-methionine; HET: SAH; 1.69A {Streptomyces SP} | Back alignment and structure |
|---|
Probab=97.75 E-value=0.00017 Score=56.48 Aligned_cols=112 Identities=17% Similarity=0.176 Sum_probs=73.8
Q ss_pred HHHHHHhhhhhcCCCeEEEec------------CCCCceEEEeech-hhhhh----hc------cCCCceEEecCCCCCC
Q 036440 15 SLALKYCKQIFERLGSLVDVG------------AFPCVKCTEFDQP-HVVAN----LL------DTNNLKYLADDFFQSI 71 (181)
Q Consensus 15 ~~~l~~~~~d~~~~~~lvDvG------------~~P~l~~~~~DlP-~Vv~~----a~------~~~ri~~~~gDff~~~ 71 (181)
...++.. +...-.+|||+| .+|+.+.+.+|+- ..++. +. ..++++++.+|+.+ +
T Consensus 17 ~~~~~~l--~~~~~~~vLDiGcG~G~~~~~la~~~p~~~v~gvD~s~~~l~~~~~~a~~~~~~~~~~~v~~~~~d~~~-l 93 (218)
T 3mq2_A 17 DAEFEQL--RSQYDDVVLDVGTGDGKHPYKVARQNPSRLVVALDADKSRMEKISAKAAAKPAKGGLPNLLYLWATAER-L 93 (218)
T ss_dssp HHHHHHH--HTTSSEEEEEESCTTCHHHHHHHHHCTTEEEEEEESCGGGGHHHHHHHTSCGGGTCCTTEEEEECCSTT-C
T ss_pred HHHHHHh--hccCCCEEEEecCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhhhhcCCCceEEEecchhh-C
Confidence 3455665 456668999999 7899999999994 43332 21 13489999999987 4
Q ss_pred CCc---ceEeccccchhhhHHhhhhhhhhcCCCccchhhhhhcccccceeeeeeccCChH------HHHHHHHHHHHHhc
Q 036440 72 PPV---CMIPLRLGYSHIKIMIAFFIRLVVGRGRLHIFSWLNFMKRVINMQIIIHVFGDE------ESVKILKICREAIT 142 (181)
Q Consensus 72 P~~---d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~iLHdw~D~------~~~~iL~~~~~a~~ 142 (181)
|.. |.+ . ++..|... +..++|++++..++
T Consensus 94 ~~~~~~d~v---------------------------------------~---~~~~~~~~~~~~~~~~~~~l~~~~~~Lk 131 (218)
T 3mq2_A 94 PPLSGVGEL---------------------------------------H---VLMPWGSLLRGVLGSSPEMLRGMAAVCR 131 (218)
T ss_dssp CSCCCEEEE---------------------------------------E---EESCCHHHHHHHHTSSSHHHHHHHHTEE
T ss_pred CCCCCCCEE---------------------------------------E---EEccchhhhhhhhccHHHHHHHHHHHcC
Confidence 432 555 1 11111111 01467888888888
Q ss_pred cCCc-------------------------cCCHHHHHHHHHhCCCeEEEEEEcC
Q 036440 143 SKAK-------------------------LSTEKELESLFVEVHFHHYKITPLF 171 (181)
Q Consensus 143 ~~g~-------------------------eRt~~E~~~Ll~~aGf~~~~i~~~~ 171 (181)
|||+ +...++++.+++++||++..+..+.
T Consensus 132 pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~aGf~i~~~~~~~ 185 (218)
T 3mq2_A 132 PGASFLVALNLHAWRPSVPEVGEHPEPTPDSADEWLAPRYAEAGWKLADCRYLE 185 (218)
T ss_dssp EEEEEEEEEEGGGBTTBCGGGTTCCCCCHHHHHHHHHHHHHHTTEEEEEEEEEC
T ss_pred CCcEEEEEeccccccccccccccCCccchHHHHHHHHHHHHHcCCCceeeeccc
Confidence 8881 1123458889999999998876543
|
| >1yb2_A Hypothetical protein TA0852; structural genomics, methyltransferase, thermoplasma acidoph midwest center for structural genomics, MCSG; 2.01A {Thermoplasma acidophilum} SCOP: c.66.1.13 | Back alignment and structure |
|---|
Probab=97.71 E-value=3.4e-05 Score=63.57 Aligned_cols=106 Identities=12% Similarity=0.099 Sum_probs=75.4
Q ss_pred HHHHHhhhhhcCCCeEEEec------------C-CCCceEEEeec-hhhhhhhcc-------CCCceEEecCCCCCCCC-
Q 036440 16 LALKYCKQIFERLGSLVDVG------------A-FPCVKCTEFDQ-PHVVANLLD-------TNNLKYLADDFFQSIPP- 73 (181)
Q Consensus 16 ~~l~~~~~d~~~~~~lvDvG------------~-~P~l~~~~~Dl-P~Vv~~a~~-------~~ri~~~~gDff~~~P~- 73 (181)
.+++.. ++..-.+|+|+| . +|..+.+.+|. |..++.+.. .+++++..+|+.+.+|.
T Consensus 101 ~~~~~~--~~~~~~~VLD~G~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~g~~~v~~~~~d~~~~~~~~ 178 (275)
T 1yb2_A 101 YIIMRC--GLRPGMDILEVGVGSGNMSSYILYALNGKGTLTVVERDEDNLKKAMDNLSEFYDIGNVRTSRSDIADFISDQ 178 (275)
T ss_dssp -----C--CCCTTCEEEEECCTTSHHHHHHHHHHTTSSEEEEECSCHHHHHHHHHHHHTTSCCTTEEEECSCTTTCCCSC
T ss_pred HHHHHc--CCCCcCEEEEecCCCCHHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHhcCCCCcEEEEECchhccCcCC
Confidence 344555 566668999999 3 68999999999 777665532 25899999999986664
Q ss_pred -cceEeccccchhhhHHhhhhhhhhcCCCccchhhhhhcccccceeeeeeccCChHHHHHHHHHHHHHhccCC----ccC
Q 036440 74 -VCMIPLRLGYSHIKIMIAFFIRLVVGRGRLHIFSWLNFMKRVINMQIIIHVFGDEESVKILKICREAITSKA----KLS 148 (181)
Q Consensus 74 -~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~iLHdw~D~~~~~iL~~~~~a~~~~g----~eR 148 (181)
.|++ ++ +.++. .++|+++...++||| -..
T Consensus 179 ~fD~V---------------------------------------i~-----~~~~~--~~~l~~~~~~LkpgG~l~i~~~ 212 (275)
T 1yb2_A 179 MYDAV---------------------------------------IA-----DIPDP--WNHVQKIASMMKPGSVATFYLP 212 (275)
T ss_dssp CEEEE---------------------------------------EE-----CCSCG--GGSHHHHHHTEEEEEEEEEEES
T ss_pred CccEE---------------------------------------EE-----cCcCH--HHHHHHHHHHcCCCCEEEEEeC
Confidence 5777 33 23332 378999999999999 222
Q ss_pred ---CHHHHHHHHHhCCCeEEEEEE
Q 036440 149 ---TEKELESLFVEVHFHHYKITP 169 (181)
Q Consensus 149 ---t~~E~~~Ll~~aGf~~~~i~~ 169 (181)
..+++.+.++++||..+++..
T Consensus 213 ~~~~~~~~~~~l~~~Gf~~~~~~~ 236 (275)
T 1yb2_A 213 NFDQSEKTVLSLSASGMHHLETVE 236 (275)
T ss_dssp SHHHHHHHHHHSGGGTEEEEEEEE
T ss_pred CHHHHHHHHHHHHHCCCeEEEEEE
Confidence 446777888899999888765
|
| >3hm2_A Precorrin-6Y C5,15-methyltransferase; alpha-beta-sandwich, structural genomics, PSI-2, protein structure initiative; 2.21A {Corynebacterium diphtheriae} | Back alignment and structure |
|---|
Probab=97.70 E-value=0.00017 Score=53.94 Aligned_cols=105 Identities=11% Similarity=0.084 Sum_probs=76.9
Q ss_pred HHHHHhhhhhcCCCeEEEec------------CCCCceEEEeec-hhhhhhhcc-------CCCceEEecCCCCCCCC--
Q 036440 16 LALKYCKQIFERLGSLVDVG------------AFPCVKCTEFDQ-PHVVANLLD-------TNNLKYLADDFFQSIPP-- 73 (181)
Q Consensus 16 ~~l~~~~~d~~~~~~lvDvG------------~~P~l~~~~~Dl-P~Vv~~a~~-------~~ri~~~~gDff~~~P~-- 73 (181)
.+++.. +...-.+|+|+| .+|..+.+.+|. |..++.+.. .+++ ++.+|..+.+|.
T Consensus 16 ~~~~~~--~~~~~~~vldiG~G~G~~~~~l~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~-~~~~d~~~~~~~~~ 92 (178)
T 3hm2_A 16 LAISAL--APKPHETLWDIGGGSGSIAIEWLRSTPQTTAVCFEISEERRERILSNAINLGVSDRI-AVQQGAPRAFDDVP 92 (178)
T ss_dssp HHHHHH--CCCTTEEEEEESTTTTHHHHHHHTTSSSEEEEEECSCHHHHHHHHHHHHTTTCTTSE-EEECCTTGGGGGCC
T ss_pred HHHHHh--cccCCCeEEEeCCCCCHHHHHHHHHCCCCeEEEEeCCHHHHHHHHHHHHHhCCCCCE-EEecchHhhhhccC
Confidence 444555 455567999999 779999999999 556665542 3478 888988765543
Q ss_pred --cceEeccccchhhhHHhhhhhhhhcCCCccchhhhhhcccccceeeeeeccCChHHHHHHHHHHHHHhccCC------
Q 036440 74 --VCMIPLRLGYSHIKIMIAFFIRLVVGRGRLHIFSWLNFMKRVINMQIIIHVFGDEESVKILKICREAITSKA------ 145 (181)
Q Consensus 74 --~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~iLHdw~D~~~~~iL~~~~~a~~~~g------ 145 (181)
.|++ ++...+|. .++|+.+...++|+|
T Consensus 93 ~~~D~i---------------------------------------~~~~~~~~------~~~l~~~~~~L~~gG~l~~~~ 127 (178)
T 3hm2_A 93 DNPDVI---------------------------------------FIGGGLTA------PGVFAAAWKRLPVGGRLVANA 127 (178)
T ss_dssp SCCSEE---------------------------------------EECC-TTC------TTHHHHHHHTCCTTCEEEEEE
T ss_pred CCCCEE---------------------------------------EECCcccH------HHHHHHHHHhcCCCCEEEEEe
Confidence 6777 66666665 679999999999999
Q ss_pred -ccCCHHHHHHHHHhCCCeEEEEE
Q 036440 146 -KLSTEKELESLFVEVHFHHYKIT 168 (181)
Q Consensus 146 -~eRt~~E~~~Ll~~aGf~~~~i~ 168 (181)
...+..++..++++.|+...++.
T Consensus 128 ~~~~~~~~~~~~~~~~~~~~~~~~ 151 (178)
T 3hm2_A 128 VTVESEQMLWALRKQFGGTISSFA 151 (178)
T ss_dssp CSHHHHHHHHHHHHHHCCEEEEEE
T ss_pred eccccHHHHHHHHHHcCCeeEEEE
Confidence 23456778889999998876653
|
| >3mb5_A SAM-dependent methyltransferase; RNA methyltransferase, M1A, TRMI, intermolecular contacts, R specificity, tetramer, disulfide bond; HET: SAM; 1.60A {Pyrococcus abyssi} PDB: 3lga_A* 3lhd_C* | Back alignment and structure |
|---|
Probab=97.69 E-value=9.3e-05 Score=59.28 Aligned_cols=109 Identities=11% Similarity=0.148 Sum_probs=81.1
Q ss_pred HHHHHHhhhhhcCCCeEEEec------------C-CCCceEEEeec-hhhhhhhc-------cCCCceEEecCCCCCCCC
Q 036440 15 SLALKYCKQIFERLGSLVDVG------------A-FPCVKCTEFDQ-PHVVANLL-------DTNNLKYLADDFFQSIPP 73 (181)
Q Consensus 15 ~~~l~~~~~d~~~~~~lvDvG------------~-~P~l~~~~~Dl-P~Vv~~a~-------~~~ri~~~~gDff~~~P~ 73 (181)
..+++.. +...-.+|+|+| + .|..+.+.+|+ |..++.+. ..+|+++..+|+.+.+|.
T Consensus 83 ~~i~~~~--~~~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~ 160 (255)
T 3mb5_A 83 ALIVAYA--GISPGDFIVEAGVGSGALTLFLANIVGPEGRVVSYEIREDFAKLAWENIKWAGFDDRVTIKLKDIYEGIEE 160 (255)
T ss_dssp HHHHHHT--TCCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHHTCTTTEEEECSCGGGCCCC
T ss_pred HHHHHhh--CCCCCCEEEEecCCchHHHHHHHHHhCCCeEEEEEecCHHHHHHHHHHHHHcCCCCceEEEECchhhccCC
Confidence 3455555 566678999999 4 78999999999 66666554 256799999999987765
Q ss_pred --cceEeccccchhhhHHhhhhhhhhcCCCccchhhhhhcccccceeeeeeccCChHHHHHHHHHHHHHhccCC------
Q 036440 74 --VCMIPLRLGYSHIKIMIAFFIRLVVGRGRLHIFSWLNFMKRVINMQIIIHVFGDEESVKILKICREAITSKA------ 145 (181)
Q Consensus 74 --~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~iLHdw~D~~~~~iL~~~~~a~~~~g------ 145 (181)
.|++ ++ +.++. .++|+++...++|+|
T Consensus 161 ~~~D~v---------------------------------------~~-----~~~~~--~~~l~~~~~~L~~gG~l~~~~ 194 (255)
T 3mb5_A 161 ENVDHV---------------------------------------IL-----DLPQP--ERVVEHAAKALKPGGFFVAYT 194 (255)
T ss_dssp CSEEEE---------------------------------------EE-----CSSCG--GGGHHHHHHHEEEEEEEEEEE
T ss_pred CCcCEE---------------------------------------EE-----CCCCH--HHHHHHHHHHcCCCCEEEEEE
Confidence 5766 32 33433 468999999999999
Q ss_pred -ccCCHHHHHHHHHhCC--CeEEEEEEcC
Q 036440 146 -KLSTEKELESLFVEVH--FHHYKITPLF 171 (181)
Q Consensus 146 -~eRt~~E~~~Ll~~aG--f~~~~i~~~~ 171 (181)
.....+++.++++++| |..+++....
T Consensus 195 ~~~~~~~~~~~~l~~~g~~f~~~~~~e~~ 223 (255)
T 3mb5_A 195 PCSNQVMRLHEKLREFKDYFMKPRTINVL 223 (255)
T ss_dssp SSHHHHHHHHHHHHHTGGGBSCCEEECCC
T ss_pred CCHHHHHHHHHHHHHcCCCccccEEEEEe
Confidence 2234567888999999 9988887553
|
| >4dzr_A Protein-(glutamine-N5) methyltransferase, release specific; structural genomics, PSI-biology; 2.55A {Alicyclobacillus acidocaldarius subsp} | Back alignment and structure |
|---|
Probab=97.68 E-value=1.4e-05 Score=61.33 Aligned_cols=120 Identities=17% Similarity=0.128 Sum_probs=72.5
Q ss_pred cCCCeEEEec------------CCCCceEEEeec-hhhhhhhcc-----CCCceEEecCCCCCCC-------CcceEecc
Q 036440 26 ERLGSLVDVG------------AFPCVKCTEFDQ-PHVVANLLD-----TNNLKYLADDFFQSIP-------PVCMIPLR 80 (181)
Q Consensus 26 ~~~~~lvDvG------------~~P~l~~~~~Dl-P~Vv~~a~~-----~~ri~~~~gDff~~~P-------~~d~~~~~ 80 (181)
..-.+|+|+| .+|+.+.+.+|+ |..++.+.. ..+++++.+|+++.++ ..|++..+
T Consensus 29 ~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~fD~i~~n 108 (215)
T 4dzr_A 29 PSGTRVIDVGTGSGCIAVSIALACPGVSVTAVDLSMDALAVARRNAERFGAVVDWAAADGIEWLIERAERGRPWHAIVSN 108 (215)
T ss_dssp CTTEEEEEEESSBCHHHHHHHHHCTTEEEEEEECC-------------------CCHHHHHHHHHHHHHTTCCBSEEEEC
T ss_pred CCCCEEEEecCCHhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHHhCCceEEEEcchHhhhhhhhhccCcccEEEEC
Confidence 5667999999 788999999999 667766643 1178999999887544 25777333
Q ss_pred ccchhhhHHhhhhhhhhcCCCccchhhhhhcccccceeeeeeccCChHHH------------------HHHHHHHHHHhc
Q 036440 81 LGYSHIKIMIAFFIRLVVGRGRLHIFSWLNFMKRVINMQIIIHVFGDEES------------------VKILKICREAIT 142 (181)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~iLHdw~D~~~------------------~~iL~~~~~a~~ 142 (181)
.-| .....+|.++++.. .++++.++..++
T Consensus 109 pp~---------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk 155 (215)
T 4dzr_A 109 PPY---------------------------------IPTGEIDQLEPSVRDYEPRLALDGGEDGLQFYRRMAALPPYVLA 155 (215)
T ss_dssp CCC---------------------------------CC------------------------CTTHHHHHHHTCCGGGBC
T ss_pred CCC---------------------------------CCCccccccChhhhccCccccccCCCcHHHHHHHHHHHHHHHhc
Confidence 322 11222222222222 788999999999
Q ss_pred cCCc-------cCCHHHHHHHHH--hCCCeEEEEEEcC-CCCeEEE
Q 036440 143 SKAK-------LSTEKELESLFV--EVHFHHYKITPLF-GLPSLIE 178 (181)
Q Consensus 143 ~~g~-------eRt~~E~~~Ll~--~aGf~~~~i~~~~-~~~~viE 178 (181)
|||+ ....+++..+++ ++||..+++.+.. +...++-
T Consensus 156 pgG~l~~~~~~~~~~~~~~~~l~~~~~gf~~~~~~~~~~~~~r~~~ 201 (215)
T 4dzr_A 156 RGRAGVFLEVGHNQADEVARLFAPWRERGFRVRKVKDLRGIDRVIA 201 (215)
T ss_dssp SSSEEEEEECTTSCHHHHHHHTGGGGGGTEECCEEECTTSCEEEEE
T ss_pred CCCeEEEEEECCccHHHHHHHHHHhhcCCceEEEEEecCCCEEEEE
Confidence 9996 678999999999 9999998887654 4444443
|
| >2qm3_A Predicted methyltransferase; putative methyltransferase, structural genomics, pyrococcus PSI-2, protein structure initiative; HET: MSE; 2.05A {Pyrococcus furiosus dsm 3638} | Back alignment and structure |
|---|
Probab=97.66 E-value=0.00028 Score=61.14 Aligned_cols=101 Identities=9% Similarity=0.023 Sum_probs=76.9
Q ss_pred CCeEEEec-----------CCCCceEEEeec-hhhhhhhcc------CCCceEEecCCCCCCCC-----cceEeccccch
Q 036440 28 LGSLVDVG-----------AFPCVKCTEFDQ-PHVVANLLD------TNNLKYLADDFFQSIPP-----VCMIPLRLGYS 84 (181)
Q Consensus 28 ~~~lvDvG-----------~~P~l~~~~~Dl-P~Vv~~a~~------~~ri~~~~gDff~~~P~-----~d~~~~~~~~~ 84 (181)
-.+|+|+| ..|..+++.+|+ |..++.+.. -+|++++.+|+++.+|. .|++
T Consensus 173 ~~~VLDlGG~G~~~~~la~~~~~~~v~~vDi~~~~l~~a~~~~~~~g~~~v~~~~~D~~~~l~~~~~~~fD~V------- 245 (373)
T 2qm3_A 173 NKDIFVLGDDDLTSIALMLSGLPKRIAVLDIDERLTKFIEKAANEIGYEDIEIFTFDLRKPLPDYALHKFDTF------- 245 (373)
T ss_dssp TCEEEEESCTTCHHHHHHHHTCCSEEEEECSCHHHHHHHHHHHHHHTCCCEEEECCCTTSCCCTTTSSCBSEE-------
T ss_pred CCEEEEECCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCEEEEEChhhhhchhhccCCccEE-------
Confidence 47899998 457789999999 888876642 12899999999986663 5887
Q ss_pred hhhHHhhhhhhhhcCCCccchhhhhhcccccceeeeeeccCChHHHHHHHHHHHHHhccCCc---------cCCH---HH
Q 036440 85 HIKIMIAFFIRLVVGRGRLHIFSWLNFMKRVINMQIIIHVFGDEESVKILKICREAITSKAK---------LSTE---KE 152 (181)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~iLHdw~D~~~~~iL~~~~~a~~~~g~---------eRt~---~E 152 (181)
++....|.+ ...++|+++..+++|||+ ..+. .+
T Consensus 246 --------------------------------i~~~p~~~~---~~~~~l~~~~~~LkpgG~~~~~~~~~~~~~~~~~~~ 290 (373)
T 2qm3_A 246 --------------------------------ITDPPETLE---AIRAFVGRGIATLKGPRCAGYFGITRRESSLDKWRE 290 (373)
T ss_dssp --------------------------------EECCCSSHH---HHHHHHHHHHHTBCSTTCEEEEEECTTTCCHHHHHH
T ss_pred --------------------------------EECCCCchH---HHHHHHHHHHHHcccCCeEEEEEEecCcCCHHHHHH
Confidence 555444433 248899999999999994 3777 67
Q ss_pred HHHHHH-hCCCeEEEEEEc
Q 036440 153 LESLFV-EVHFHHYKITPL 170 (181)
Q Consensus 153 ~~~Ll~-~aGf~~~~i~~~ 170 (181)
....+. +.||....+.+.
T Consensus 291 ~~~~l~~~~g~~~~~~~~~ 309 (373)
T 2qm3_A 291 IQKLLLNEFNVVITDIIRN 309 (373)
T ss_dssp HHHHHHHTSCCEEEEEEEE
T ss_pred HHHHHHHhcCcchhhhhhh
Confidence 778888 999988776653
|
| >2kw5_A SLR1183 protein; structural genomics, northeast structural genomics consortium (NESG), PSI-2, protein structure initiative, unknown function; NMR {Synechocystis} PDB: 3mer_A | Back alignment and structure |
|---|
Probab=97.66 E-value=0.00034 Score=53.76 Aligned_cols=96 Identities=10% Similarity=0.054 Sum_probs=73.4
Q ss_pred eEEEec-----------CCCCceEEEeec-hhhhhhhcc-----CCCceEEecCCCCC-CCC--cceEeccccchhhhHH
Q 036440 30 SLVDVG-----------AFPCVKCTEFDQ-PHVVANLLD-----TNNLKYLADDFFQS-IPP--VCMIPLRLGYSHIKIM 89 (181)
Q Consensus 30 ~lvDvG-----------~~P~l~~~~~Dl-P~Vv~~a~~-----~~ri~~~~gDff~~-~P~--~d~~~~~~~~~~~~~~ 89 (181)
+|||+| +. +.+.+.+|. |..++.+.. ..++++..+|+.+. +|. .|++
T Consensus 32 ~vLdiGcG~G~~~~~l~~~-~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v------------ 98 (202)
T 2kw5_A 32 KILCLAEGEGRNACFLASL-GYEVTAVDQSSVGLAKAKQLAQEKGVKITTVQSNLADFDIVADAWEGI------------ 98 (202)
T ss_dssp EEEECCCSCTHHHHHHHTT-TCEEEEECSSHHHHHHHHHHHHHHTCCEEEECCBTTTBSCCTTTCSEE------------
T ss_pred CEEEECCCCCHhHHHHHhC-CCeEEEEECCHHHHHHHHHHHHhcCCceEEEEcChhhcCCCcCCccEE------------
Confidence 999999 33 458999998 566665542 34899999999863 443 5877
Q ss_pred hhhhhhhhcCCCccchhhhhhcccccceeeeeeccCChHHHHHHHHHHHHHhccCC-----------------------c
Q 036440 90 IAFFIRLVVGRGRLHIFSWLNFMKRVINMQIIIHVFGDEESVKILKICREAITSKA-----------------------K 146 (181)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~iLHdw~D~~~~~iL~~~~~a~~~~g-----------------------~ 146 (181)
+. .. +.++.++..++|++++..++||| .
T Consensus 99 ---------------------------~~-~~-~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~ 149 (202)
T 2kw5_A 99 ---------------------------VS-IF-CHLPSSLRQQLYPKVYQGLKPGGVFILEGFAPEQLQYNTGGPKDLDL 149 (202)
T ss_dssp ---------------------------EE-EC-CCCCHHHHHHHHHHHHTTCCSSEEEEEEEECTTTGGGTSCCSSSGGG
T ss_pred ---------------------------EE-Eh-hcCCHHHHHHHHHHHHHhcCCCcEEEEEEeccccccCCCCCCCccee
Confidence 44 22 34577888999999999999999 3
Q ss_pred cCCHHHHHHHHHhCCCeEEEEEE
Q 036440 147 LSTEKELESLFVEVHFHHYKITP 169 (181)
Q Consensus 147 eRt~~E~~~Ll~~aGf~~~~i~~ 169 (181)
..|.+|++++|+ ||+++++..
T Consensus 150 ~~~~~~l~~~l~--Gf~v~~~~~ 170 (202)
T 2kw5_A 150 LPKLETLQSELP--SLNWLIANN 170 (202)
T ss_dssp CCCHHHHHHHCS--SSCEEEEEE
T ss_pred ecCHHHHHHHhc--CceEEEEEE
Confidence 579999999999 999988753
|
| >4e2x_A TCAB9; kijanose, tetronitrose, tetradeoxy sugar, sugar methylation, transferase; HET: SAH TYD; 1.40A {Micromonospora chalcea} PDB: 3ndi_A* 3ndj_A* 4e32_A* 4e33_A* 4e2y_A* 4e31_A* 4e2w_A* 4e2z_A* 4e30_A* | Back alignment and structure |
|---|
Probab=97.65 E-value=0.00016 Score=62.67 Aligned_cols=113 Identities=13% Similarity=0.115 Sum_probs=78.6
Q ss_pred HHHHHHhhhhhcCCCeEEEec----------CCCCceEEEeech-hhhhhhccCCCceEEecCCC----CCCC----Ccc
Q 036440 15 SLALKYCKQIFERLGSLVDVG----------AFPCVKCTEFDQP-HVVANLLDTNNLKYLADDFF----QSIP----PVC 75 (181)
Q Consensus 15 ~~~l~~~~~d~~~~~~lvDvG----------~~P~l~~~~~DlP-~Vv~~a~~~~ri~~~~gDff----~~~P----~~d 75 (181)
..+++.+ ....-.+||||| +--+.+.+.+|.- ..++.+... .+......|- +.+| ..|
T Consensus 97 ~~l~~~~--~~~~~~~VLDiGcG~G~~~~~l~~~g~~v~gvD~s~~~~~~a~~~-~~~~~~~~~~~~~~~~l~~~~~~fD 173 (416)
T 4e2x_A 97 RDFLATE--LTGPDPFIVEIGCNDGIMLRTIQEAGVRHLGFEPSSGVAAKAREK-GIRVRTDFFEKATADDVRRTEGPAN 173 (416)
T ss_dssp HHHHHTT--TCSSSCEEEEETCTTTTTHHHHHHTTCEEEEECCCHHHHHHHHTT-TCCEECSCCSHHHHHHHHHHHCCEE
T ss_pred HHHHHHh--CCCCCCEEEEecCCCCHHHHHHHHcCCcEEEECCCHHHHHHHHHc-CCCcceeeechhhHhhcccCCCCEE
Confidence 3444444 345567999999 1124588999984 556655533 3333332221 1122 257
Q ss_pred eEeccccchhhhHHhhhhhhhhcCCCccchhhhhhcccccceeeeeeccCChHHHHHHHHHHHHHhccCC----------
Q 036440 76 MIPLRLGYSHIKIMIAFFIRLVVGRGRLHIFSWLNFMKRVINMQIIIHVFGDEESVKILKICREAITSKA---------- 145 (181)
Q Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~iLHdw~D~~~~~iL~~~~~a~~~~g---------- 145 (181)
++ +..++||.++| -.++|++++..++|||
T Consensus 174 ~I---------------------------------------~~~~vl~h~~d--~~~~l~~~~r~LkpgG~l~i~~~~~~ 212 (416)
T 4e2x_A 174 VI---------------------------------------YAANTLCHIPY--VQSVLEGVDALLAPDGVFVFEDPYLG 212 (416)
T ss_dssp EE---------------------------------------EEESCGGGCTT--HHHHHHHHHHHEEEEEEEEEEEECHH
T ss_pred EE---------------------------------------EECChHHhcCC--HHHHHHHHHHHcCCCeEEEEEeCChH
Confidence 77 88999999974 5679999999999998
Q ss_pred ----------------ccCCHHHHHHHHHhCCCeEEEEEEcC
Q 036440 146 ----------------KLSTEKELESLFVEVHFHHYKITPLF 171 (181)
Q Consensus 146 ----------------~eRt~~E~~~Ll~~aGf~~~~i~~~~ 171 (181)
...|.++++.+++++||+++.+...+
T Consensus 213 ~~~~~~~~~~~~~~~~~~~s~~~l~~ll~~aGf~~~~~~~~~ 254 (416)
T 4e2x_A 213 DIVAKTSFDQIFDEHFFLFSATSVQGMAQRCGFELVDVQRLP 254 (416)
T ss_dssp HHHHHTCGGGCSTTCCEECCHHHHHHHHHHTTEEEEEEEEEC
T ss_pred HhhhhcchhhhhhhhhhcCCHHHHHHHHHHcCCEEEEEEEcc
Confidence 35688999999999999999988754
|
| >1fbn_A MJ fibrillarin homologue; MJ proteins, ribosomal RNA processing, snoRNP, structural genomics, BSGC structure funded by NIH; 1.60A {Methanocaldococcus jannaschii} SCOP: c.66.1.3 PDB: 1g8s_A | Back alignment and structure |
|---|
Probab=97.65 E-value=0.00015 Score=57.87 Aligned_cols=110 Identities=10% Similarity=0.061 Sum_probs=75.5
Q ss_pred hcCCCeEEEec------------CCCCceEEEeec-hhhhhhh----ccCCCceEEecCCCCC---CCC---cceEeccc
Q 036440 25 FERLGSLVDVG------------AFPCVKCTEFDQ-PHVVANL----LDTNNLKYLADDFFQS---IPP---VCMIPLRL 81 (181)
Q Consensus 25 ~~~~~~lvDvG------------~~P~l~~~~~Dl-P~Vv~~a----~~~~ri~~~~gDff~~---~P~---~d~~~~~~ 81 (181)
+..-.+|+|+| .+|..+.+.+|. |..++.+ ...++++++.+|+.++ .|. .|++
T Consensus 72 ~~~~~~VLDlGcG~G~~~~~la~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~D~v---- 147 (230)
T 1fbn_A 72 IKRDSKILYLGASAGTTPSHVADIADKGIVYAIEYAPRIMRELLDACAERENIIPILGDANKPQEYANIVEKVDVI---- 147 (230)
T ss_dssp CCTTCEEEEESCCSSHHHHHHHHHTTTSEEEEEESCHHHHHHHHHHTTTCTTEEEEECCTTCGGGGTTTSCCEEEE----
T ss_pred CCCCCEEEEEcccCCHHHHHHHHHcCCcEEEEEECCHHHHHHHHHHhhcCCCeEEEECCCCCcccccccCccEEEE----
Confidence 44557899999 557778899998 4455433 2347899999998762 221 3444
Q ss_pred cchhhhHHhhhhhhhhcCCCccchhhhhhcccccceeeeeeccCChHH-HHHHHHHHHHHhccCCc----------cC--
Q 036440 82 GYSHIKIMIAFFIRLVVGRGRLHIFSWLNFMKRVINMQIIIHVFGDEE-SVKILKICREAITSKAK----------LS-- 148 (181)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~iLHdw~D~~-~~~iL~~~~~a~~~~g~----------eR-- 148 (181)
+|+..+.+ ...+|++++..++|||+ ..
T Consensus 148 ----------------------------------------~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~ 187 (230)
T 1fbn_A 148 ----------------------------------------YEDVAQPNQAEILIKNAKWFLKKGGYGMIAIKARSIDVTK 187 (230)
T ss_dssp ----------------------------------------EECCCSTTHHHHHHHHHHHHEEEEEEEEEEEEGGGTCSSS
T ss_pred ----------------------------------------EEecCChhHHHHHHHHHHHhCCCCcEEEEEEecCCCCCCC
Confidence 36765543 45669999999999991 11
Q ss_pred -----CHHHHHHHHHhCCCeEEEEEEcCCC---CeEEEE
Q 036440 149 -----TEKELESLFVEVHFHHYKITPLFGL---PSLIEV 179 (181)
Q Consensus 149 -----t~~E~~~Ll~~aGf~~~~i~~~~~~---~~viE~ 179 (181)
..++++ +|+++||+.+++.++... ..++.+
T Consensus 188 ~~~~~~~~~l~-~l~~~Gf~~~~~~~~~~~~~~~~~v~~ 225 (230)
T 1fbn_A 188 DPKEIFKEQKE-ILEAGGFKIVDEVDIEPFEKDHVMFVG 225 (230)
T ss_dssp CHHHHHHHHHH-HHHHHTEEEEEEEECTTTSTTEEEEEE
T ss_pred CHHHhhHHHHH-HHHHCCCEEEEEEccCCCccceEEEEE
Confidence 226788 999999999998877553 344444
|
| >2pwy_A TRNA (adenine-N(1)-)-methyltransferase; mtase, adoMet, TRMI, tRNA-M1A58; HET: SAH; 1.70A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=97.59 E-value=0.00017 Score=57.34 Aligned_cols=106 Identities=12% Similarity=0.100 Sum_probs=77.1
Q ss_pred HHHHHhhhhhcCCCeEEEec------------C-CCCceEEEeec-hhhhhhhcc-------CCCceEEecCCCCC-CCC
Q 036440 16 LALKYCKQIFERLGSLVDVG------------A-FPCVKCTEFDQ-PHVVANLLD-------TNNLKYLADDFFQS-IPP 73 (181)
Q Consensus 16 ~~l~~~~~d~~~~~~lvDvG------------~-~P~l~~~~~Dl-P~Vv~~a~~-------~~ri~~~~gDff~~-~P~ 73 (181)
.+++.. ++..-.+|||+| . .|..+.+.+|. |..++.+.. .+++++..+|+.+. +|.
T Consensus 87 ~~~~~~--~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~g~~~v~~~~~d~~~~~~~~ 164 (258)
T 2pwy_A 87 AMVTLL--DLAPGMRVLEAGTGSGGLTLFLARAVGEKGLVESYEARPHHLAQAERNVRAFWQVENVRFHLGKLEEAELEE 164 (258)
T ss_dssp HHHHHT--TCCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHCCCCCEEEEESCGGGCCCCT
T ss_pred HHHHHc--CCCCCCEEEEECCCcCHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHhcCCCCEEEEECchhhcCCCC
Confidence 455555 566778999999 3 67889999998 676665542 37899999999875 654
Q ss_pred --cceEeccccchhhhHHhhhhhhhhcCCCccchhhhhhcccccceeeeeeccCChHHHHHHHHHHHHHhccCC----cc
Q 036440 74 --VCMIPLRLGYSHIKIMIAFFIRLVVGRGRLHIFSWLNFMKRVINMQIIIHVFGDEESVKILKICREAITSKA----KL 147 (181)
Q Consensus 74 --~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~iLHdw~D~~~~~iL~~~~~a~~~~g----~e 147 (181)
.|++ ++ ++++. .++|+++...++|+| -.
T Consensus 165 ~~~D~v---------------------------------------~~-----~~~~~--~~~l~~~~~~L~~gG~l~~~~ 198 (258)
T 2pwy_A 165 AAYDGV---------------------------------------AL-----DLMEP--WKVLEKAALALKPDRFLVAYL 198 (258)
T ss_dssp TCEEEE---------------------------------------EE-----ESSCG--GGGHHHHHHHEEEEEEEEEEE
T ss_pred CCcCEE---------------------------------------EE-----CCcCH--HHHHHHHHHhCCCCCEEEEEe
Confidence 5777 33 34433 368999999999999 22
Q ss_pred C---CHHHHHHHHHhCCCeEEEEEE
Q 036440 148 S---TEKELESLFVEVHFHHYKITP 169 (181)
Q Consensus 148 R---t~~E~~~Ll~~aGf~~~~i~~ 169 (181)
. ..++..+.++++||..+++..
T Consensus 199 ~~~~~~~~~~~~l~~~gf~~~~~~~ 223 (258)
T 2pwy_A 199 PNITQVLELVRAAEAHPFRLERVLE 223 (258)
T ss_dssp SCHHHHHHHHHHHTTTTEEEEEEEE
T ss_pred CCHHHHHHHHHHHHHCCCceEEEEE
Confidence 2 345666778889999877664
|
| >3m70_A Tellurite resistance protein TEHB homolog; structural genomics, PSI-2, protein ST initiative; 1.95A {Haemophilus influenzae} | Back alignment and structure |
|---|
Probab=97.57 E-value=0.00021 Score=58.28 Aligned_cols=111 Identities=14% Similarity=0.163 Sum_probs=85.1
Q ss_pred HHHHHHhhhhhcCCCeEEEec----------CCCCceEEEeec-hhhhhhhcc-----CCCceEEecCCCCCC-CC-cce
Q 036440 15 SLALKYCKQIFERLGSLVDVG----------AFPCVKCTEFDQ-PHVVANLLD-----TNNLKYLADDFFQSI-PP-VCM 76 (181)
Q Consensus 15 ~~~l~~~~~d~~~~~~lvDvG----------~~P~l~~~~~Dl-P~Vv~~a~~-----~~ri~~~~gDff~~~-P~-~d~ 76 (181)
+.+++.. +...-.+|||+| +--+.+.+.+|. |..++.+.. ..++++..+|+.+.. +. .|+
T Consensus 110 ~~~~~~~--~~~~~~~vLD~GcG~G~~~~~l~~~g~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~fD~ 187 (286)
T 3m70_A 110 GDVVDAA--KIISPCKVLDLGCGQGRNSLYLSLLGYDVTSWDHNENSIAFLNETKEKENLNISTALYDINAANIQENYDF 187 (286)
T ss_dssp HHHHHHH--HHSCSCEEEEESCTTCHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCGGGCCCCSCEEE
T ss_pred HHHHHHh--hccCCCcEEEECCCCCHHHHHHHHCCCeEEEEECCHHHHHHHHHHHHHcCCceEEEEeccccccccCCccE
Confidence 4566666 344668999999 112568899998 556665532 238999999998743 33 688
Q ss_pred EeccccchhhhHHhhhhhhhhcCCCccchhhhhhcccccceeeeeeccCChHHHHHHHHHHHHHhccCC-----------
Q 036440 77 IPLRLGYSHIKIMIAFFIRLVVGRGRLHIFSWLNFMKRVINMQIIIHVFGDEESVKILKICREAITSKA----------- 145 (181)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~iLHdw~D~~~~~iL~~~~~a~~~~g----------- 145 (181)
+ +...++|.++++...++|++++..++|||
T Consensus 188 i---------------------------------------~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~ 228 (286)
T 3m70_A 188 I---------------------------------------VSTVVFMFLNRERVPSIIKNMKEHTNVGGYNLIVAAMSTD 228 (286)
T ss_dssp E---------------------------------------EECSSGGGSCGGGHHHHHHHHHHTEEEEEEEEEEEEBCCS
T ss_pred E---------------------------------------EEccchhhCCHHHHHHHHHHHHHhcCCCcEEEEEEecCCC
Confidence 8 88899999999999999999999999999
Q ss_pred ---------ccCCHHHHHHHHHhCCCeEEEEE
Q 036440 146 ---------KLSTEKELESLFVEVHFHHYKIT 168 (181)
Q Consensus 146 ---------~eRt~~E~~~Ll~~aGf~~~~i~ 168 (181)
...+.+|++++++. |+++...
T Consensus 229 ~~~~~~~~~~~~~~~~l~~~~~~--~~~~~~~ 258 (286)
T 3m70_A 229 DVPCPLPFSFTFAENELKEYYKD--WEFLEYN 258 (286)
T ss_dssp SSCCSSCCSCCBCTTHHHHHTTT--SEEEEEE
T ss_pred CCCCCCCccccCCHHHHHHHhcC--CEEEEEE
Confidence 24568899999965 8887764
|
| >2h00_A Methyltransferase 10 domain containing protein; structural genomics, structural genomics consortium, SGC; HET: SAH; 2.00A {Homo sapiens} SCOP: c.66.1.54 | Back alignment and structure |
|---|
Probab=97.54 E-value=0.00012 Score=58.95 Aligned_cols=55 Identities=7% Similarity=-0.060 Sum_probs=39.3
Q ss_pred CCeEEEec------------CCCCceEEEeec-hhhhhhhc-------cCCCceEEecCC----CCCCC-----CcceEe
Q 036440 28 LGSLVDVG------------AFPCVKCTEFDQ-PHVVANLL-------DTNNLKYLADDF----FQSIP-----PVCMIP 78 (181)
Q Consensus 28 ~~~lvDvG------------~~P~l~~~~~Dl-P~Vv~~a~-------~~~ri~~~~gDf----f~~~P-----~~d~~~ 78 (181)
-.++||+| ++|+.+.+.+|+ |..++.+. ..+|++++.+|. ++.+| ..|++.
T Consensus 66 ~~~vLDlG~G~G~~~~~la~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~fD~i~ 145 (254)
T 2h00_A 66 LRRGIDIGTGASCIYPLLGATLNGWYFLATEVDDMCFNYAKKNVEQNNLSDLIKVVKVPQKTLLMDALKEESEIIYDFCM 145 (254)
T ss_dssp CCEEEEESCTTTTHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTCSSTTTSTTCCSCCBSEEE
T ss_pred CCEEEEeCCChhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHHcCCCccEEEEEcchhhhhhhhhhcccCCcccEEE
Confidence 45899999 567889999998 66666553 256799999984 44555 258875
Q ss_pred cccc
Q 036440 79 LRLG 82 (181)
Q Consensus 79 ~~~~ 82 (181)
.+.-
T Consensus 146 ~npp 149 (254)
T 2h00_A 146 CNPP 149 (254)
T ss_dssp ECCC
T ss_pred ECCC
Confidence 5533
|
| >2nxc_A L11 mtase, ribosomal protein L11 methyltransferase; transferase S-adenosly-L-methionine dependent methyltransfer posttranslational modification; 1.59A {Thermus thermophilus} SCOP: c.66.1.39 PDB: 1ufk_A 2nxe_A* 2nxj_A 2nxn_A 2zbp_A* 2zbq_A* 2zbr_A* 3cjq_A* 3cjr_A* 3cju_A* 3egv_A* 3cjt_A* | Back alignment and structure |
|---|
Probab=97.54 E-value=0.00021 Score=58.52 Aligned_cols=106 Identities=13% Similarity=0.113 Sum_probs=77.2
Q ss_pred hcCCCeEEEec------------CCCCceEEEeec-hhhhhhhcc-----CCCceEEecCCCCCCCC--cceEeccccch
Q 036440 25 FERLGSLVDVG------------AFPCVKCTEFDQ-PHVVANLLD-----TNNLKYLADDFFQSIPP--VCMIPLRLGYS 84 (181)
Q Consensus 25 ~~~~~~lvDvG------------~~P~l~~~~~Dl-P~Vv~~a~~-----~~ri~~~~gDff~~~P~--~d~~~~~~~~~ 84 (181)
...-.+|+|+| ..+ +.+.+|. |..++.+.. .-.+++..+|+.+.+|. .|++
T Consensus 118 ~~~~~~VLDiGcG~G~l~~~la~~g~--~v~gvDi~~~~v~~a~~n~~~~~~~v~~~~~d~~~~~~~~~fD~V------- 188 (254)
T 2nxc_A 118 LRPGDKVLDLGTGSGVLAIAAEKLGG--KALGVDIDPMVLPQAEANAKRNGVRPRFLEGSLEAALPFGPFDLL------- 188 (254)
T ss_dssp CCTTCEEEEETCTTSHHHHHHHHTTC--EEEEEESCGGGHHHHHHHHHHTTCCCEEEESCHHHHGGGCCEEEE-------
T ss_pred cCCCCEEEEecCCCcHHHHHHHHhCC--eEEEEECCHHHHHHHHHHHHHcCCcEEEEECChhhcCcCCCCCEE-------
Confidence 34567999999 333 8899998 666665542 11289999998875543 5776
Q ss_pred hhhHHhhhhhhhhcCCCccchhhhhhcccccceeeeeeccCChHHHHHHHHHHHHHhccCC-------ccCCHHHHHHHH
Q 036440 85 HIKIMIAFFIRLVVGRGRLHIFSWLNFMKRVINMQIIIHVFGDEESVKILKICREAITSKA-------KLSTEKELESLF 157 (181)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~iLHdw~D~~~~~iL~~~~~a~~~~g-------~eRt~~E~~~Ll 157 (181)
+.. ++ .+....+++.+...++||| ...+.+++.+++
T Consensus 189 --------------------------------v~n-~~----~~~~~~~l~~~~~~LkpgG~lils~~~~~~~~~v~~~l 231 (254)
T 2nxc_A 189 --------------------------------VAN-LY----AELHAALAPRYREALVPGGRALLTGILKDRAPLVREAM 231 (254)
T ss_dssp --------------------------------EEE-CC----HHHHHHHHHHHHHHEEEEEEEEEEEEEGGGHHHHHHHH
T ss_pred --------------------------------EEC-Cc----HHHHHHHHHHHHHHcCCCCEEEEEeeccCCHHHHHHHH
Confidence 332 22 2345789999999999999 456789999999
Q ss_pred HhCCCeEEEEEEcCCCCeE
Q 036440 158 VEVHFHHYKITPLFGLPSL 176 (181)
Q Consensus 158 ~~aGf~~~~i~~~~~~~~v 176 (181)
+++||+++++....+...+
T Consensus 232 ~~~Gf~~~~~~~~~~W~~l 250 (254)
T 2nxc_A 232 AGAGFRPLEEAAEGEWVLL 250 (254)
T ss_dssp HHTTCEEEEEEEETTEEEE
T ss_pred HHCCCEEEEEeccCCeEEE
Confidence 9999999998877665444
|
| >3bgv_A MRNA CAP guanine-N7 methyltransferase; alternative splicing, mRNA capping, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: SAH; 2.30A {Homo sapiens} PDB: 3epp_A* | Back alignment and structure |
|---|
Probab=97.52 E-value=0.00065 Score=56.45 Aligned_cols=81 Identities=16% Similarity=0.135 Sum_probs=56.4
Q ss_pred cCCCeEEEec-----------CCCCceEEEeec-hhhhhhhcc-------------CCCceEEecCCCCC-----C--C-
Q 036440 26 ERLGSLVDVG-----------AFPCVKCTEFDQ-PHVVANLLD-------------TNNLKYLADDFFQS-----I--P- 72 (181)
Q Consensus 26 ~~~~~lvDvG-----------~~P~l~~~~~Dl-P~Vv~~a~~-------------~~ri~~~~gDff~~-----~--P- 72 (181)
....+|||+| +.|..+.+.+|+ |..++.+.. ..+++++.+|+.+. + |
T Consensus 33 ~~~~~VLDlGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~ 112 (313)
T 3bgv_A 33 KRDITVLDLGCGKGGDLLKWKKGRINKLVCTDIADVSVKQCQQRYEDMKNRRDSEYIFSAEFITADSSKELLIDKFRDPQ 112 (313)
T ss_dssp --CCEEEEETCTTTTTHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHHHSSSCC-CCCEEEEEECCTTTSCSTTTCSSTT
T ss_pred CCCCEEEEECCCCcHHHHHHHhcCCCEEEEEeCCHHHHHHHHHHHHHhhhcccccccceEEEEEecccccchhhhcccCC
Confidence 3567999999 456778999998 455554432 24799999999863 3 2
Q ss_pred -CcceEeccccchhhhHHhhhhhhhhcCCCccchhhhhhcccccceeeeeeccC--ChHHHHHHHHHHHHHhccCC
Q 036440 73 -PVCMIPLRLGYSHIKIMIAFFIRLVVGRGRLHIFSWLNFMKRVINMQIIIHVF--GDEESVKILKICREAITSKA 145 (181)
Q Consensus 73 -~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~iLHdw--~D~~~~~iL~~~~~a~~~~g 145 (181)
..|++ +...++|.. +.++..++|++++..++|||
T Consensus 113 ~~fD~V---------------------------------------~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG 149 (313)
T 3bgv_A 113 MCFDIC---------------------------------------SCQFVCHYSFESYEQADMMLRNACERLSPGG 149 (313)
T ss_dssp CCEEEE---------------------------------------EEETCGGGGGGSHHHHHHHHHHHHTTEEEEE
T ss_pred CCEEEE---------------------------------------EEecchhhccCCHHHHHHHHHHHHHHhCCCc
Confidence 25777 666677764 33556678888888888877
|
| >1l3i_A Precorrin-6Y methyltransferase/putative decarboxylase; structural genomics, beta barrel, rossmann fold, tetramer; HET: SAH; 1.95A {Methanothermobacterthermautotrophicus} SCOP: c.66.1.22 PDB: 1kxz_A 1l3b_A 1f38_A 1l3c_A* | Back alignment and structure |
|---|
Probab=97.46 E-value=0.0002 Score=53.62 Aligned_cols=102 Identities=16% Similarity=0.160 Sum_probs=73.8
Q ss_pred HHHHHHhhhhhcCCCeEEEec------------CCCCceEEEeec-hhhhhhhcc-------CCCceEEecCCCCCCC--
Q 036440 15 SLALKYCKQIFERLGSLVDVG------------AFPCVKCTEFDQ-PHVVANLLD-------TNNLKYLADDFFQSIP-- 72 (181)
Q Consensus 15 ~~~l~~~~~d~~~~~~lvDvG------------~~P~l~~~~~Dl-P~Vv~~a~~-------~~ri~~~~gDff~~~P-- 72 (181)
..+++.. +...-.+++|+| .. .+.+.+|. |..++.+.. .+++++..+|+.+.+|
T Consensus 23 ~~~~~~~--~~~~~~~vldiG~G~G~~~~~l~~~~--~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~ 98 (192)
T 1l3i_A 23 CLIMCLA--EPGKNDVAVDVGCGTGGVTLELAGRV--RRVYAIDRNPEAISTTEMNLQRHGLGDNVTLMEGDAPEALCKI 98 (192)
T ss_dssp HHHHHHH--CCCTTCEEEEESCTTSHHHHHHHTTS--SEEEEEESCHHHHHHHHHHHHHTTCCTTEEEEESCHHHHHTTS
T ss_pred HHHHHhc--CCCCCCEEEEECCCCCHHHHHHHHhc--CEEEEEECCHHHHHHHHHHHHHcCCCcceEEEecCHHHhcccC
Confidence 3344555 455668999999 23 68899998 666665542 2689999999876444
Q ss_pred -CcceEeccccchhhhHHhhhhhhhhcCCCccchhhhhhcccccceeeeeeccCChHHHHHHHHHHHHHhccCC------
Q 036440 73 -PVCMIPLRLGYSHIKIMIAFFIRLVVGRGRLHIFSWLNFMKRVINMQIIIHVFGDEESVKILKICREAITSKA------ 145 (181)
Q Consensus 73 -~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~iLHdw~D~~~~~iL~~~~~a~~~~g------ 145 (181)
..|++ ++...+|+ ..++|+.+...++|+|
T Consensus 99 ~~~D~v---------------------------------------~~~~~~~~-----~~~~l~~~~~~l~~gG~l~~~~ 134 (192)
T 1l3i_A 99 PDIDIA---------------------------------------VVGGSGGE-----LQEILRIIKDKLKPGGRIIVTA 134 (192)
T ss_dssp CCEEEE---------------------------------------EESCCTTC-----HHHHHHHHHHTEEEEEEEEEEE
T ss_pred CCCCEE---------------------------------------EECCchHH-----HHHHHHHHHHhcCCCcEEEEEe
Confidence 35777 55544443 3789999999999999
Q ss_pred -ccCCHHHHHHHHHhCCCeE
Q 036440 146 -KLSTEKELESLFVEVHFHH 164 (181)
Q Consensus 146 -~eRt~~E~~~Ll~~aGf~~ 164 (181)
...+.+++.+++++.||..
T Consensus 135 ~~~~~~~~~~~~l~~~g~~~ 154 (192)
T 1l3i_A 135 ILLETKFEAMECLRDLGFDV 154 (192)
T ss_dssp CBHHHHHHHHHHHHHTTCCC
T ss_pred cCcchHHHHHHHHHHCCCce
Confidence 3456778899999999943
|
| >3bwc_A Spermidine synthase; SAM, SGPP, structura genomics, PSI, protein structure initiative, structural GEN pathogenic protozoa consortium; HET: MSE SAM; 2.30A {Trypanosoma cruzi} PDB: 3bwb_A* | Back alignment and structure |
|---|
Probab=97.45 E-value=0.00022 Score=60.34 Aligned_cols=105 Identities=10% Similarity=0.072 Sum_probs=72.8
Q ss_pred cCCCeEEEec-----------CC-CCceEEEeec-hhhhhhhc----------cCCCceEEecCCCCCC---CC--cceE
Q 036440 26 ERLGSLVDVG-----------AF-PCVKCTEFDQ-PHVVANLL----------DTNNLKYLADDFFQSI---PP--VCMI 77 (181)
Q Consensus 26 ~~~~~lvDvG-----------~~-P~l~~~~~Dl-P~Vv~~a~----------~~~ri~~~~gDff~~~---P~--~d~~ 77 (181)
....+|||+| ++ |..+.+.+|+ |.+++.+. ..+|++++.+|.++.. +. .|++
T Consensus 94 ~~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~a~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~~~~fDvI 173 (304)
T 3bwc_A 94 PKPERVLIIGGGDGGVLREVLRHGTVEHCDLVDIDGEVMEQSKQHFPQISRSLADPRATVRVGDGLAFVRQTPDNTYDVV 173 (304)
T ss_dssp SSCCEEEEEECTTSHHHHHHHTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHHHSSCTTCEEEE
T ss_pred CCCCeEEEEcCCCCHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHhHHhhcccCCCcEEEEECcHHHHHHhccCCceeEE
Confidence 3557899999 44 6779999999 66776553 2479999999987532 22 5887
Q ss_pred eccccchhhhHHhhhhhhhhcCCCccchhhhhhcccccceeeeeeccCChHHH--HHHHHHHHHHhccCC----------
Q 036440 78 PLRLGYSHIKIMIAFFIRLVVGRGRLHIFSWLNFMKRVINMQIIIHVFGDEES--VKILKICREAITSKA---------- 145 (181)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~iLHdw~D~~~--~~iL~~~~~a~~~~g---------- 145 (181)
++....|.+++... .+++++++..++|||
T Consensus 174 ---------------------------------------i~d~~~~~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~~~~~ 214 (304)
T 3bwc_A 174 ---------------------------------------IIDTTDPAGPASKLFGEAFYKDVLRILKPDGICCNQGESIW 214 (304)
T ss_dssp ---------------------------------------EEECC---------CCHHHHHHHHHHEEEEEEEEEEECCTT
T ss_pred ---------------------------------------EECCCCccccchhhhHHHHHHHHHHhcCCCcEEEEecCCcc
Confidence 44444444443332 588999999999999
Q ss_pred -ccCCHHHHHHHHHhCCCeEEEEEE
Q 036440 146 -KLSTEKELESLFVEVHFHHYKITP 169 (181)
Q Consensus 146 -~eRt~~E~~~Ll~~aGf~~~~i~~ 169 (181)
...+.+++.+.++++||..+++..
T Consensus 215 ~~~~~~~~~~~~l~~~GF~~v~~~~ 239 (304)
T 3bwc_A 215 LDLELIEKMSRFIRETGFASVQYAL 239 (304)
T ss_dssp TCHHHHHHHHHHHHHHTCSEEEEEE
T ss_pred cchHHHHHHHHHHHhCCCCcEEEEE
Confidence 123568899999999999888764
|
| >2yxd_A Probable cobalt-precorrin-6Y C(15)-methyltransfer [decarboxylating]; alpha and beta protein (A/B) class; HET: MES; 2.30A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=97.41 E-value=0.00075 Score=50.20 Aligned_cols=104 Identities=13% Similarity=0.103 Sum_probs=73.6
Q ss_pred HHHHHHhhhhhcCCCeEEEec----------CCCCceEEEeec-hhhhhhhcc------CCCceEEecCCCCCCCC--cc
Q 036440 15 SLALKYCKQIFERLGSLVDVG----------AFPCVKCTEFDQ-PHVVANLLD------TNNLKYLADDFFQSIPP--VC 75 (181)
Q Consensus 15 ~~~l~~~~~d~~~~~~lvDvG----------~~P~l~~~~~Dl-P~Vv~~a~~------~~ri~~~~gDff~~~P~--~d 75 (181)
..+++.. +...-.+++|+| +-|..+.+.+|. |..++.+.. .++++++.+|+.+.+|. .|
T Consensus 25 ~~~~~~~--~~~~~~~vLdiG~G~G~~~~~l~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~~D 102 (183)
T 2yxd_A 25 AVSIGKL--NLNKDDVVVDVGCGSGGMTVEIAKRCKFVYAIDYLDGAIEVTKQNLAKFNIKNCQIIKGRAEDVLDKLEFN 102 (183)
T ss_dssp HHHHHHH--CCCTTCEEEEESCCCSHHHHHHHTTSSEEEEEECSHHHHHHHHHHHHHTTCCSEEEEESCHHHHGGGCCCS
T ss_pred HHHHHHc--CCCCCCEEEEeCCCCCHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHHcCCCcEEEEECCccccccCCCCc
Confidence 3444555 455667999999 338889999998 566665542 26899999999886553 67
Q ss_pred eEeccccchhhhHHhhhhhhhhcCCCccchhhhhhcccccceeeeeeccCChHHHHHHHHHHHHHhccCC-------ccC
Q 036440 76 MIPLRLGYSHIKIMIAFFIRLVVGRGRLHIFSWLNFMKRVINMQIIIHVFGDEESVKILKICREAITSKA-------KLS 148 (181)
Q Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~iLHdw~D~~~~~iL~~~~~a~~~~g-------~eR 148 (181)
++ ++..+ +...++|+.++.. |+| ...
T Consensus 103 ~i---------------------------------------~~~~~------~~~~~~l~~~~~~--~gG~l~~~~~~~~ 135 (183)
T 2yxd_A 103 KA---------------------------------------FIGGT------KNIEKIIEILDKK--KINHIVANTIVLE 135 (183)
T ss_dssp EE---------------------------------------EECSC------SCHHHHHHHHHHT--TCCEEEEEESCHH
T ss_pred EE---------------------------------------EECCc------ccHHHHHHHHhhC--CCCEEEEEecccc
Confidence 77 44444 3445688888777 888 344
Q ss_pred CHHHHHHHHHhCCCeEEEE
Q 036440 149 TEKELESLFVEVHFHHYKI 167 (181)
Q Consensus 149 t~~E~~~Ll~~aGf~~~~i 167 (181)
+.++..++++++||....+
T Consensus 136 ~~~~~~~~l~~~g~~~~~~ 154 (183)
T 2yxd_A 136 NAAKIINEFESRGYNVDAV 154 (183)
T ss_dssp HHHHHHHHHHHTTCEEEEE
T ss_pred cHHHHHHHHHHcCCeEEEE
Confidence 5678889999999876554
|
| >1o54_A SAM-dependent O-methyltransferase; TM0748, structural genomi PSI, protein structure initiative, joint center for structu genomics; 1.65A {Thermotoga maritima} SCOP: c.66.1.13 | Back alignment and structure |
|---|
Probab=97.40 E-value=0.00019 Score=58.83 Aligned_cols=107 Identities=12% Similarity=0.100 Sum_probs=77.9
Q ss_pred HHHHHhhhhhcCCCeEEEec------------C-CCCceEEEeec-hhhhhhhcc-------CCCceEEecCCCCCCCC-
Q 036440 16 LALKYCKQIFERLGSLVDVG------------A-FPCVKCTEFDQ-PHVVANLLD-------TNNLKYLADDFFQSIPP- 73 (181)
Q Consensus 16 ~~l~~~~~d~~~~~~lvDvG------------~-~P~l~~~~~Dl-P~Vv~~a~~-------~~ri~~~~gDff~~~P~- 73 (181)
.+++.. ++..-.+|||+| + .|..+.+.+|. |..++.+.. .+++++..+|+.+.+|.
T Consensus 103 ~i~~~~--~~~~~~~VLDiG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~ 180 (277)
T 1o54_A 103 FIAMML--DVKEGDRIIDTGVGSGAMCAVLARAVGSSGKVFAYEKREEFAKLAESNLTKWGLIERVTIKVRDISEGFDEK 180 (277)
T ss_dssp HHHHHT--TCCTTCEEEEECCTTSHHHHHHHHHTTTTCEEEEECCCHHHHHHHHHHHHHTTCGGGEEEECCCGGGCCSCC
T ss_pred HHHHHh--CCCCCCEEEEECCcCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHcCCCCCEEEEECCHHHcccCC
Confidence 445555 566667999999 3 68899999998 776665542 36899999999987664
Q ss_pred -cceEeccccchhhhHHhhhhhhhhcCCCccchhhhhhcccccceeeeeeccCChHHHHHHHHHHHHHhccCC----c--
Q 036440 74 -VCMIPLRLGYSHIKIMIAFFIRLVVGRGRLHIFSWLNFMKRVINMQIIIHVFGDEESVKILKICREAITSKA----K-- 146 (181)
Q Consensus 74 -~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~iLHdw~D~~~~~iL~~~~~a~~~~g----~-- 146 (181)
.|++ ++ +.++. .++|+++...++|+| -
T Consensus 181 ~~D~V---------------------------------------~~-----~~~~~--~~~l~~~~~~L~pgG~l~~~~~ 214 (277)
T 1o54_A 181 DVDAL---------------------------------------FL-----DVPDP--WNYIDKCWEALKGGGRFATVCP 214 (277)
T ss_dssp SEEEE---------------------------------------EE-----CCSCG--GGTHHHHHHHEEEEEEEEEEES
T ss_pred ccCEE---------------------------------------EE-----CCcCH--HHHHHHHHHHcCCCCEEEEEeC
Confidence 5777 33 23322 378999999999999 2
Q ss_pred -cCCHHHHHHHHHhCCCeEEEEEEc
Q 036440 147 -LSTEKELESLFVEVHFHHYKITPL 170 (181)
Q Consensus 147 -eRt~~E~~~Ll~~aGf~~~~i~~~ 170 (181)
....+++.+.|+++||..+++...
T Consensus 215 ~~~~~~~~~~~l~~~gf~~~~~~~~ 239 (277)
T 1o54_A 215 TTNQVQETLKKLQELPFIRIEVWES 239 (277)
T ss_dssp SHHHHHHHHHHHHHSSEEEEEEECC
T ss_pred CHHHHHHHHHHHHHCCCceeEEEEE
Confidence 224557778888999998887654
|
| >3m33_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MCSG, midwest center for structural genomics; 2.19A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=97.38 E-value=0.00033 Score=55.57 Aligned_cols=97 Identities=9% Similarity=0.077 Sum_probs=72.8
Q ss_pred cCCCeEEEec----------CCCCceEEEeec-hhhhhhhcc-CCCceEEecCCCCCCCC-----cceEeccccchhhhH
Q 036440 26 ERLGSLVDVG----------AFPCVKCTEFDQ-PHVVANLLD-TNNLKYLADDFFQSIPP-----VCMIPLRLGYSHIKI 88 (181)
Q Consensus 26 ~~~~~lvDvG----------~~P~l~~~~~Dl-P~Vv~~a~~-~~ri~~~~gDff~~~P~-----~d~~~~~~~~~~~~~ 88 (181)
..-.+|||+| +--+.+.+.+|+ |..++.+.. .++++++.+|+.+.+|. .|++
T Consensus 47 ~~~~~vLDiGcG~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~d~~~~~~~~~~~~fD~v----------- 115 (226)
T 3m33_A 47 TPQTRVLEAGCGHGPDAARFGPQAARWAAYDFSPELLKLARANAPHADVYEWNGKGELPAGLGAPFGLI----------- 115 (226)
T ss_dssp CTTCEEEEESCTTSHHHHHHGGGSSEEEEEESCHHHHHHHHHHCTTSEEEECCSCSSCCTTCCCCEEEE-----------
T ss_pred CCCCeEEEeCCCCCHHHHHHHHcCCEEEEEECCHHHHHHHHHhCCCceEEEcchhhccCCcCCCCEEEE-----------
Confidence 4557999999 212568999998 666766653 57899999999876652 4666
Q ss_pred HhhhhhhhhcCCCccchhhhhhcccccceeeeeeccCChHHHHHHHHHHHHHhccCC------ccCCHHHHHHHHHhCCC
Q 036440 89 MIAFFIRLVVGRGRLHIFSWLNFMKRVINMQIIIHVFGDEESVKILKICREAITSKA------KLSTEKELESLFVEVHF 162 (181)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~iLHdw~D~~~~~iL~~~~~a~~~~g------~eRt~~E~~~Ll~~aGf 162 (181)
+.. .+..++|++++..++||| ...+.+++.++++++||
T Consensus 116 ----------------------------~~~--------~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~l~~~Gf 159 (226)
T 3m33_A 116 ----------------------------VSR--------RGPTSVILRLPELAAPDAHFLYVGPRLNVPEVPERLAAVGW 159 (226)
T ss_dssp ----------------------------EEE--------SCCSGGGGGHHHHEEEEEEEEEEESSSCCTHHHHHHHHTTC
T ss_pred ----------------------------EeC--------CCHHHHHHHHHHHcCCCcEEEEeCCcCCHHHHHHHHHHCCC
Confidence 222 234467889999999998 34588899999999999
Q ss_pred eEEEEEE
Q 036440 163 HHYKITP 169 (181)
Q Consensus 163 ~~~~i~~ 169 (181)
..+++..
T Consensus 160 ~~~~~~~ 166 (226)
T 3m33_A 160 DIVAEDH 166 (226)
T ss_dssp EEEEEEE
T ss_pred eEEEEEe
Confidence 9988764
|
| >3lpm_A Putative methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium, nysgxrc; 2.40A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=97.38 E-value=0.0021 Score=52.14 Aligned_cols=131 Identities=8% Similarity=0.055 Sum_probs=80.2
Q ss_pred HHHHhhhhhc-CCCeEEEec------------CCCCceEEEeec-hhhhhhhc-------cCCCceEEecCCCCC---CC
Q 036440 17 ALKYCKQIFE-RLGSLVDVG------------AFPCVKCTEFDQ-PHVVANLL-------DTNNLKYLADDFFQS---IP 72 (181)
Q Consensus 17 ~l~~~~~d~~-~~~~lvDvG------------~~P~l~~~~~Dl-P~Vv~~a~-------~~~ri~~~~gDff~~---~P 72 (181)
++..+. +.. .-.+|||+| +.|. +.+.+|+ |..++.+. ..+|++++.+|+.+. +|
T Consensus 39 ll~~~~-~~~~~~~~vLDlG~G~G~~~~~la~~~~~-~v~gvDi~~~~~~~a~~n~~~~~~~~~v~~~~~D~~~~~~~~~ 116 (259)
T 3lpm_A 39 LLAKFS-YLPIRKGKIIDLCSGNGIIPLLLSTRTKA-KIVGVEIQERLADMAKRSVAYNQLEDQIEIIEYDLKKITDLIP 116 (259)
T ss_dssp HHHHHC-CCCSSCCEEEETTCTTTHHHHHHHTTCCC-EEEEECCSHHHHHHHHHHHHHTTCTTTEEEECSCGGGGGGTSC
T ss_pred HHHHHh-cCCCCCCEEEEcCCchhHHHHHHHHhcCC-cEEEEECCHHHHHHHHHHHHHCCCcccEEEEECcHHHhhhhhc
Confidence 444442 455 667999999 4454 8899998 56665553 256899999999864 32
Q ss_pred C--cceEeccccchhhhHHhhhhhhhhcCCCccchhhhhhcccccceeeeeeccCChHHHHHHHHHHHHHhccCC-----
Q 036440 73 P--VCMIPLRLGYSHIKIMIAFFIRLVVGRGRLHIFSWLNFMKRVINMQIIIHVFGDEESVKILKICREAITSKA----- 145 (181)
Q Consensus 73 ~--~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~iLHdw~D~~~~~iL~~~~~a~~~~g----- 145 (181)
. .|++..+--|..... .|.-+.+ -.+.+-+.........+++.+...++|+|
T Consensus 117 ~~~fD~Ii~npPy~~~~~---------~~~~~~~------------~~~~~a~~~~~~~~~~~l~~~~~~LkpgG~l~~~ 175 (259)
T 3lpm_A 117 KERADIVTCNPPYFATPD---------TSLKNTN------------EHFRIARHEVMCTLEDTIRVAASLLKQGGKANFV 175 (259)
T ss_dssp TTCEEEEEECCCC--------------------------------------------HHHHHHHHHHHHHEEEEEEEEEE
T ss_pred cCCccEEEECCCCCCCcc---------ccCCCCc------------hHHHhhhccccCCHHHHHHHHHHHccCCcEEEEE
Confidence 2 588844433211100 0000000 00011111123445579999999999999
Q ss_pred -ccCCHHHHHHHHHhCCCeEEEEEEc
Q 036440 146 -KLSTEKELESLFVEVHFHHYKITPL 170 (181)
Q Consensus 146 -~eRt~~E~~~Ll~~aGf~~~~i~~~ 170 (181)
...+.+++..++++.||...++.++
T Consensus 176 ~~~~~~~~~~~~l~~~~~~~~~~~~v 201 (259)
T 3lpm_A 176 HRPERLLDIIDIMRKYRLEPKRIQFV 201 (259)
T ss_dssp ECTTTHHHHHHHHHHTTEEEEEEEEE
T ss_pred EcHHHHHHHHHHHHHCCCceEEEEEe
Confidence 6778899999999999998887665
|
| >3g5t_A Trans-aconitate 3-methyltransferase; structural genomics, protein structure initiative, PSI, center for eukaryotic structural genomics; HET: MSE SAH T8N; 1.12A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.37 E-value=0.00058 Score=56.27 Aligned_cols=44 Identities=18% Similarity=0.127 Sum_probs=35.4
Q ss_pred cCCCeEEEec------------C-CCCceEEEeec-hhhhhhhcc--------CCCceEEecCCCC
Q 036440 26 ERLGSLVDVG------------A-FPCVKCTEFDQ-PHVVANLLD--------TNNLKYLADDFFQ 69 (181)
Q Consensus 26 ~~~~~lvDvG------------~-~P~l~~~~~Dl-P~Vv~~a~~--------~~ri~~~~gDff~ 69 (181)
..-.+||||| . -|..+.+.+|+ |..++.+.. .++++++.+|+.+
T Consensus 35 ~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~v~~~~~d~~~ 100 (299)
T 3g5t_A 35 GERKLLVDVGCGPGTATLQMAQELKPFEQIIGSDLSATMIKTAEVIKEGSPDTYKNVSFKISSSDD 100 (299)
T ss_dssp SCCSEEEEETCTTTHHHHHHHHHSSCCSEEEEEESCHHHHHHHHHHHHHCC-CCTTEEEEECCTTC
T ss_pred CCCCEEEEECCCCCHHHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHHhccCCCCceEEEEcCHHh
Confidence 4568999999 3 48999999998 666766542 5799999999986
|
| >2ipx_A RRNA 2'-O-methyltransferase fibrillarin; FBL, structural genomics, structural genomics consortium, SGC; HET: MTA; 1.82A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.36 E-value=0.0011 Score=52.64 Aligned_cols=104 Identities=10% Similarity=0.042 Sum_probs=71.0
Q ss_pred hcCCCeEEEec------------CC-CCceEEEeechh-----hhhhhccCCCceEEecCCCCC--CC----CcceEecc
Q 036440 25 FERLGSLVDVG------------AF-PCVKCTEFDQPH-----VVANLLDTNNLKYLADDFFQS--IP----PVCMIPLR 80 (181)
Q Consensus 25 ~~~~~~lvDvG------------~~-P~l~~~~~DlP~-----Vv~~a~~~~ri~~~~gDff~~--~P----~~d~~~~~ 80 (181)
++.-.+|+|+| .+ |..+.+.+|+-. ..+.+...++++++.+|+.+. +| ..|++
T Consensus 75 ~~~~~~vLDlG~G~G~~~~~la~~~g~~~~v~gvD~s~~~i~~~~~~a~~~~~v~~~~~d~~~~~~~~~~~~~~D~V--- 151 (233)
T 2ipx_A 75 IKPGAKVLYLGAASGTTVSHVSDIVGPDGLVYAVEFSHRSGRDLINLAKKRTNIIPVIEDARHPHKYRMLIAMVDVI--- 151 (233)
T ss_dssp CCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEECCCHHHHHHHHHHHHHCTTEEEECSCTTCGGGGGGGCCCEEEE---
T ss_pred CCCCCEEEEEcccCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHhhccCCeEEEEcccCChhhhcccCCcEEEE---
Confidence 44557999999 33 778999999843 344444458999999999873 22 24766
Q ss_pred ccchhhhHHhhhhhhhhcCCCccchhhhhhcccccceeeeeeccCChHHHHHHHHHHHHHhccCC------cc------C
Q 036440 81 LGYSHIKIMIAFFIRLVVGRGRLHIFSWLNFMKRVINMQIIIHVFGDEESVKILKICREAITSKA------KL------S 148 (181)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~iLHdw~D~~~~~iL~~~~~a~~~~g------~e------R 148 (181)
++. .. ..+....++++++..++|+| .. .
T Consensus 152 ------------------------------------~~~-~~---~~~~~~~~~~~~~~~LkpgG~l~i~~~~~~~~~~~ 191 (233)
T 2ipx_A 152 ------------------------------------FAD-VA---QPDQTRIVALNAHTFLRNGGHFVISIKANCIDSTA 191 (233)
T ss_dssp ------------------------------------EEC-CC---CTTHHHHHHHHHHHHEEEEEEEEEEEEHHHHCSSS
T ss_pred ------------------------------------EEc-CC---CccHHHHHHHHHHHHcCCCeEEEEEEcccccccCC
Confidence 331 11 34455677889999999998 11 1
Q ss_pred -----CHHHHHHHHHhCCCeEEEEEEcCC
Q 036440 149 -----TEKELESLFVEVHFHHYKITPLFG 172 (181)
Q Consensus 149 -----t~~E~~~Ll~~aGf~~~~i~~~~~ 172 (181)
-.++ .++|+++||+++++.++..
T Consensus 192 ~~~~~~~~~-~~~l~~~Gf~~~~~~~~~~ 219 (233)
T 2ipx_A 192 SAEAVFASE-VKKMQQENMKPQEQLTLEP 219 (233)
T ss_dssp CHHHHHHHH-HHTTGGGTEEEEEEEECTT
T ss_pred CHHHHHHHH-HHHHHHCCCceEEEEecCC
Confidence 1123 6889999999998776544
|
| >3njr_A Precorrin-6Y methylase; methyltransferase, decarboxylase, transferase; HET: SAH PG4; 2.70A {Rhodobacter capsulatus} | Back alignment and structure |
|---|
Probab=97.31 E-value=0.0021 Score=50.76 Aligned_cols=104 Identities=13% Similarity=0.079 Sum_probs=74.6
Q ss_pred HHHHHhhhhhcCCCeEEEec-----------CCCCceEEEeec-hhhhhhhcc-------CCCceEEecCCCCCC---CC
Q 036440 16 LALKYCKQIFERLGSLVDVG-----------AFPCVKCTEFDQ-PHVVANLLD-------TNNLKYLADDFFQSI---PP 73 (181)
Q Consensus 16 ~~l~~~~~d~~~~~~lvDvG-----------~~P~l~~~~~Dl-P~Vv~~a~~-------~~ri~~~~gDff~~~---P~ 73 (181)
.+++.. +...-.+|+|+| +. ..+.+.+|. |..++.+.. .++++++.+|+.+.+ +.
T Consensus 46 ~~l~~l--~~~~~~~vLDlGcG~G~~~~~la~~-~~~v~~vD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~~~~~~ 122 (204)
T 3njr_A 46 LTLAAL--APRRGELLWDIGGGSGSVSVEWCLA-GGRAITIEPRADRIENIQKNIDTYGLSPRMRAVQGTAPAALADLPL 122 (204)
T ss_dssp HHHHHH--CCCTTCEEEEETCTTCHHHHHHHHT-TCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCTTGGGTTSCC
T ss_pred HHHHhc--CCCCCCEEEEecCCCCHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHHHHcCCCCCEEEEeCchhhhcccCCC
Confidence 344555 456668999999 33 678999998 666665542 348999999998743 34
Q ss_pred cceEeccccchhhhHHhhhhhhhhcCCCccchhhhhhcccccceeeeeeccCChHHHHHHHHHHHHHhccCC-------c
Q 036440 74 VCMIPLRLGYSHIKIMIAFFIRLVVGRGRLHIFSWLNFMKRVINMQIIIHVFGDEESVKILKICREAITSKA-------K 146 (181)
Q Consensus 74 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~iLHdw~D~~~~~iL~~~~~a~~~~g-------~ 146 (181)
.|++ ++...+ + .. +++.+...++||| .
T Consensus 123 ~D~v---------------------------------------~~~~~~----~--~~-~l~~~~~~LkpgG~lv~~~~~ 156 (204)
T 3njr_A 123 PEAV---------------------------------------FIGGGG----S--QA-LYDRLWEWLAPGTRIVANAVT 156 (204)
T ss_dssp CSEE---------------------------------------EECSCC----C--HH-HHHHHHHHSCTTCEEEEEECS
T ss_pred CCEE---------------------------------------EECCcc----c--HH-HHHHHHHhcCCCcEEEEEecC
Confidence 6777 333222 1 22 8999999999999 3
Q ss_pred cCCHHHHHHHHHhCCCeEEEEE
Q 036440 147 LSTEKELESLFVEVHFHHYKIT 168 (181)
Q Consensus 147 eRt~~E~~~Ll~~aGf~~~~i~ 168 (181)
..+.++..+++++.|+++.++.
T Consensus 157 ~~~~~~~~~~l~~~g~~i~~i~ 178 (204)
T 3njr_A 157 LESETLLTQLHARHGGQLLRID 178 (204)
T ss_dssp HHHHHHHHHHHHHHCSEEEEEE
T ss_pred cccHHHHHHHHHhCCCcEEEEE
Confidence 4567788889999999887764
|
| >2gb4_A Thiopurine S-methyltransferase; 18204406, thiopurine methyltransferase, structural genomics, PSI, protein structure initiative; HET: SAH; 1.25A {Mus musculus} PDB: 3bgi_A* 3bgd_A* 2bzg_A* 2h11_A* | Back alignment and structure |
|---|
Probab=97.27 E-value=0.00066 Score=56.13 Aligned_cols=103 Identities=8% Similarity=-0.037 Sum_probs=78.9
Q ss_pred CCCeEEEec----------CCCCceEEEeec-hhhhhhhc-----------------------cCCCceEEecCCCCCCC
Q 036440 27 RLGSLVDVG----------AFPCVKCTEFDQ-PHVVANLL-----------------------DTNNLKYLADDFFQSIP 72 (181)
Q Consensus 27 ~~~~lvDvG----------~~P~l~~~~~Dl-P~Vv~~a~-----------------------~~~ri~~~~gDff~~~P 72 (181)
.-.+|||+| +--+.+.+.+|+ |..++.+. ...+|+++.+|+++--+
T Consensus 68 ~~~~vLD~GCG~G~~~~~La~~G~~V~gvD~S~~~i~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~D~~~l~~ 147 (252)
T 2gb4_A 68 SGLRVFFPLCGKAIEMKWFADRGHTVVGVEISEIGIREFFAEQNLSYTEEPLAEIAGAKVFKSSSGSISLYCCSIFDLPR 147 (252)
T ss_dssp CSCEEEETTCTTCTHHHHHHHTTCEEEEECSCHHHHHHHHHHTTCCEEEEECTTSTTCEEEEETTSSEEEEESCTTTGGG
T ss_pred CCCeEEEeCCCCcHHHHHHHHCCCeEEEEECCHHHHHHHHHhcccccccccccccccccccccCCCceEEEECccccCCc
Confidence 457899999 222568999998 45555542 12689999999997322
Q ss_pred ----CcceEeccccchhhhHHhhhhhhhhcCCCccchhhhhhcccccceeeeeeccCChHHHHHHHHHHHHHhccCCc--
Q 036440 73 ----PVCMIPLRLGYSHIKIMIAFFIRLVVGRGRLHIFSWLNFMKRVINMQIIIHVFGDEESVKILKICREAITSKAK-- 146 (181)
Q Consensus 73 ----~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~iLHdw~D~~~~~iL~~~~~a~~~~g~-- 146 (181)
.-|++ +.+.++|..++++..+.++.++..++|||+
T Consensus 148 ~~~~~FD~V---------------------------------------~~~~~l~~l~~~~~~~~l~~~~~~LkpGG~l~ 188 (252)
T 2gb4_A 148 ANIGKFDRI---------------------------------------WDRGALVAINPGDHDRYADIILSLLRKEFQYL 188 (252)
T ss_dssp GCCCCEEEE---------------------------------------EESSSTTTSCGGGHHHHHHHHHHTEEEEEEEE
T ss_pred ccCCCEEEE---------------------------------------EEhhhhhhCCHHHHHHHHHHHHHHcCCCeEEE
Confidence 25777 667788888888888999999999999992
Q ss_pred ----------------cCCHHHHHHHHHhCCCeEEEEEE
Q 036440 147 ----------------LSTEKELESLFVEVHFHHYKITP 169 (181)
Q Consensus 147 ----------------eRt~~E~~~Ll~~aGf~~~~i~~ 169 (181)
..|.+|+++++++ +|+++.+..
T Consensus 189 l~~~~~~~~~~~g~~~~~~~~el~~~l~~-~f~v~~~~~ 226 (252)
T 2gb4_A 189 VAVLSYDPTKHAGPPFYVPSAELKRLFGT-KCSMQCLEE 226 (252)
T ss_dssp EEEEECCTTSCCCSSCCCCHHHHHHHHTT-TEEEEEEEE
T ss_pred EEEEecCCccCCCCCCCCCHHHHHHHhhC-CeEEEEEec
Confidence 2588999999988 599877653
|
| >3kr9_A SAM-dependent methyltransferase; class I rossmann-like methyltransferase fold; 2.00A {Streptococcus pneumoniae} PDB: 3ku1_A* | Back alignment and structure |
|---|
Probab=97.21 E-value=0.0046 Score=51.29 Aligned_cols=111 Identities=14% Similarity=0.105 Sum_probs=81.5
Q ss_pred CCCeEEEec------------CCCCceEEEeec-hhhhhhhc-------cCCCceEEecCCCCCCCC---cceEeccccc
Q 036440 27 RLGSLVDVG------------AFPCVKCTEFDQ-PHVVANLL-------DTNNLKYLADDFFQSIPP---VCMIPLRLGY 83 (181)
Q Consensus 27 ~~~~lvDvG------------~~P~l~~~~~Dl-P~Vv~~a~-------~~~ri~~~~gDff~~~P~---~d~~~~~~~~ 83 (181)
.-.+|+||| ..|..+++..|. |..++.+. ..++|++..+|.++.+|. .|++
T Consensus 15 ~g~~VlDIGtGsG~l~i~la~~~~~~~V~avDi~~~al~~A~~N~~~~gl~~~i~~~~~d~l~~l~~~~~~D~I------ 88 (225)
T 3kr9_A 15 QGAILLDVGSDHAYLPIELVERGQIKSAIAGEVVEGPYQSAVKNVEAHGLKEKIQVRLANGLAAFEETDQVSVI------ 88 (225)
T ss_dssp TTEEEEEETCSTTHHHHHHHHTTSEEEEEEEESSHHHHHHHHHHHHHTTCTTTEEEEECSGGGGCCGGGCCCEE------
T ss_pred CCCEEEEeCCCcHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCceEEEEECchhhhcccCcCCCEE------
Confidence 346899999 778889999998 45555443 367999999999998874 5766
Q ss_pred hhhhHHhhhhhhhhcCCCccchhhhhhcccccceeeeeeccCChHHHHHHHHHHHHHhccCC-----ccCCHHHHHHHHH
Q 036440 84 SHIKIMIAFFIRLVVGRGRLHIFSWLNFMKRVINMQIIIHVFGDEESVKILKICREAITSKA-----KLSTEKELESLFV 158 (181)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~iLHdw~D~~~~~iL~~~~~a~~~~g-----~eRt~~E~~~Ll~ 158 (181)
++..+ +.+--.+||..+...+++++ .-...+..+++|.
T Consensus 89 ---------------------------------viaG~----Gg~~i~~Il~~~~~~L~~~~~lVlq~~~~~~~vr~~L~ 131 (225)
T 3kr9_A 89 ---------------------------------TIAGM----GGRLIARILEEGLGKLANVERLILQPNNREDDLRIWLQ 131 (225)
T ss_dssp ---------------------------------EEEEE----CHHHHHHHHHHTGGGCTTCCEEEEEESSCHHHHHHHHH
T ss_pred ---------------------------------EEcCC----ChHHHHHHHHHHHHHhCCCCEEEEECCCCHHHHHHHHH
Confidence 44433 34456789999999999887 3467899999999
Q ss_pred hCCCeEEEEEEc--CC-CCeEEEEE
Q 036440 159 EVHFHHYKITPL--FG-LPSLIEVY 180 (181)
Q Consensus 159 ~aGf~~~~i~~~--~~-~~~viE~~ 180 (181)
+.||.++.-.-+ .+ ...+|.+.
T Consensus 132 ~~Gf~i~~e~lv~e~~~~Yeii~~~ 156 (225)
T 3kr9_A 132 DHGFQIVAESILEEAGKFYEILVVE 156 (225)
T ss_dssp HTTEEEEEEEEEEETTEEEEEEEEE
T ss_pred HCCCEEEEEEEEEECCEEEEEEEEE
Confidence 999998865432 23 34555543
|
| >3lec_A NADB-rossmann superfamily protein; PSI, MCSG, structural genomics, midwest CENT structural genomics, protein structure initiative; 1.80A {Streptococcus agalactiae} | Back alignment and structure |
|---|
Probab=97.18 E-value=0.0044 Score=51.68 Aligned_cols=111 Identities=14% Similarity=0.041 Sum_probs=80.6
Q ss_pred CCCeEEEec------------CCCCceEEEeec-hhhhhhhc-------cCCCceEEecCCCCCCCC---cceEeccccc
Q 036440 27 RLGSLVDVG------------AFPCVKCTEFDQ-PHVVANLL-------DTNNLKYLADDFFQSIPP---VCMIPLRLGY 83 (181)
Q Consensus 27 ~~~~lvDvG------------~~P~l~~~~~Dl-P~Vv~~a~-------~~~ri~~~~gDff~~~P~---~d~~~~~~~~ 83 (181)
.-.+|+||| ..|..+++..|. |..++.|. ..+||++..+|.++.++. .|++
T Consensus 21 ~g~~VlDIGtGsG~l~i~la~~~~~~~V~AvDi~~~al~~A~~N~~~~gl~~~I~~~~gD~l~~~~~~~~~D~I------ 94 (230)
T 3lec_A 21 KGARLLDVGSDHAYLPIFLLQMGYCDFAIAGEVVNGPYQSALKNVSEHGLTSKIDVRLANGLSAFEEADNIDTI------ 94 (230)
T ss_dssp TTEEEEEETCSTTHHHHHHHHTTCEEEEEEEESSHHHHHHHHHHHHHTTCTTTEEEEECSGGGGCCGGGCCCEE------
T ss_pred CCCEEEEECCchHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECchhhccccccccCEE------
Confidence 446899999 678889999998 45555443 367999999999988754 5776
Q ss_pred hhhhHHhhhhhhhhcCCCccchhhhhhcccccceeeeeeccCChHHHHHHHHHHHHHhccCC-----ccCCHHHHHHHHH
Q 036440 84 SHIKIMIAFFIRLVVGRGRLHIFSWLNFMKRVINMQIIIHVFGDEESVKILKICREAITSKA-----KLSTEKELESLFV 158 (181)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~iLHdw~D~~~~~iL~~~~~a~~~~g-----~eRt~~E~~~Ll~ 158 (181)
++..+. -+--.+||......++++| .-...++++++|.
T Consensus 95 ---------------------------------viaGmG----g~lI~~IL~~~~~~l~~~~~lIlqp~~~~~~lr~~L~ 137 (230)
T 3lec_A 95 ---------------------------------TICGMG----GRLIADILNNDIDKLQHVKTLVLQPNNREDDLRKWLA 137 (230)
T ss_dssp ---------------------------------EEEEEC----HHHHHHHHHHTGGGGTTCCEEEEEESSCHHHHHHHHH
T ss_pred ---------------------------------EEeCCc----hHHHHHHHHHHHHHhCcCCEEEEECCCChHHHHHHHH
Confidence 444333 4556778888888888877 3456899999999
Q ss_pred hCCCeEEEEEEc--CC-CCeEEEEE
Q 036440 159 EVHFHHYKITPL--FG-LPSLIEVY 180 (181)
Q Consensus 159 ~aGf~~~~i~~~--~~-~~~viE~~ 180 (181)
+.||.+.+-.-+ .+ ...+|.+.
T Consensus 138 ~~Gf~i~~E~lv~e~~~~Yeii~~~ 162 (230)
T 3lec_A 138 ANDFEIVAEDILTENDKRYEILVVK 162 (230)
T ss_dssp HTTEEEEEEEEEEC--CEEEEEEEE
T ss_pred HCCCEEEEEEEEEECCEEEEEEEEE
Confidence 999999876533 22 34566554
|
| >2aot_A HMT, histamine N-methyltransferase; classic methyltransferase fold, protein-drug complex; HET: CSO 2PM SAH; 1.90A {Homo sapiens} SCOP: c.66.1.19 PDB: 1jqd_A* 2aou_A* 2aov_A* 2aox_A* 1jqe_A* 2aow_A* | Back alignment and structure |
|---|
Probab=97.18 E-value=0.00063 Score=56.12 Aligned_cols=50 Identities=14% Similarity=0.160 Sum_probs=40.2
Q ss_pred eeeeeeccCChHHHHHHHHHHHHHhccCC------------------------------ccCCHHHHHHHHHhCCCeEEE
Q 036440 117 NMQIIIHVFGDEESVKILKICREAITSKA------------------------------KLSTEKELESLFVEVHFHHYK 166 (181)
Q Consensus 117 ~l~~iLHdw~D~~~~~iL~~~~~a~~~~g------------------------------~eRt~~E~~~Ll~~aGf~~~~ 166 (181)
+...+||.++|-. +.|++++..++||| +-.|.++|..+|+++||+.++
T Consensus 140 ~~~~~l~~~~d~~--~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~~~ 217 (292)
T 2aot_A 140 HMIQMLYYVKDIP--ATLKFFHSLLGTNAKMLIIVVSGSSGWDKLWKKYGSRFPQDDLCQYITSDDLTQMLDNLGLKYEC 217 (292)
T ss_dssp EEESCGGGCSCHH--HHHHHHHHTEEEEEEEEEEEECTTSHHHHHHHHHGGGSCCCTTCCCCCHHHHHHHHHHHTCCEEE
T ss_pred EEeeeeeecCCHH--HHHHHHHHHcCCCcEEEEEEecCCccHHHHHHHHHHhccCCCcccCCCHHHHHHHHHHCCCceEE
Confidence 7888888887754 47888888888888 135789999999999999877
Q ss_pred EE
Q 036440 167 IT 168 (181)
Q Consensus 167 i~ 168 (181)
..
T Consensus 218 ~~ 219 (292)
T 2aot_A 218 YD 219 (292)
T ss_dssp EE
T ss_pred EE
Confidence 43
|
| >3ofk_A Nodulation protein S; NODS, N-methyltransferase, SAH, SAM, NOD factor, fixation, symbiosis, alpha/beta structure; HET: SAH; 1.85A {Bradyrhizobium SP} PDB: 3ofj_A* | Back alignment and structure |
|---|
Probab=97.16 E-value=0.0011 Score=51.37 Aligned_cols=81 Identities=14% Similarity=0.231 Sum_probs=62.6
Q ss_pred cCCCeEEEec----------CCCCceEEEeec-hhhhhhhcc----CCCceEEecCCCCCCCC--cceEeccccchhhhH
Q 036440 26 ERLGSLVDVG----------AFPCVKCTEFDQ-PHVVANLLD----TNNLKYLADDFFQSIPP--VCMIPLRLGYSHIKI 88 (181)
Q Consensus 26 ~~~~~lvDvG----------~~P~l~~~~~Dl-P~Vv~~a~~----~~ri~~~~gDff~~~P~--~d~~~~~~~~~~~~~ 88 (181)
....+|||+| +--..+.+.+|. |..++.+.. .++++++.+|+.+..|. .|++
T Consensus 50 ~~~~~vLDiGcG~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~~~~~fD~v----------- 118 (216)
T 3ofk_A 50 GAVSNGLEIGCAAGAFTEKLAPHCKRLTVIDVMPRAIGRACQRTKRWSHISWAATDILQFSTAELFDLI----------- 118 (216)
T ss_dssp SSEEEEEEECCTTSHHHHHHGGGEEEEEEEESCHHHHHHHHHHTTTCSSEEEEECCTTTCCCSCCEEEE-----------
T ss_pred CCCCcEEEEcCCCCHHHHHHHHcCCEEEEEECCHHHHHHHHHhcccCCCeEEEEcchhhCCCCCCccEE-----------
Confidence 3457899999 111347889998 566665542 45899999999875443 5888
Q ss_pred HhhhhhhhhcCCCccchhhhhhcccccceeeeeeccCCh-HHHHHHHHHHHHHhccCC
Q 036440 89 MIAFFIRLVVGRGRLHIFSWLNFMKRVINMQIIIHVFGD-EESVKILKICREAITSKA 145 (181)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~iLHdw~D-~~~~~iL~~~~~a~~~~g 145 (181)
++..++|.++| +...++|++++..++|||
T Consensus 119 ----------------------------~~~~~l~~~~~~~~~~~~l~~~~~~L~pgG 148 (216)
T 3ofk_A 119 ----------------------------VVAEVLYYLEDMTQMRTAIDNMVKMLAPGG 148 (216)
T ss_dssp ----------------------------EEESCGGGSSSHHHHHHHHHHHHHTEEEEE
T ss_pred ----------------------------EEccHHHhCCCHHHHHHHHHHHHHHcCCCC
Confidence 88899999987 566799999999999999
|
| >2pjd_A Ribosomal RNA small subunit methyltransferase C; gene duplication, RNA modification, SAM binding; 2.10A {Escherichia coli} | Back alignment and structure |
|---|
Probab=97.15 E-value=3.9e-05 Score=65.60 Aligned_cols=90 Identities=18% Similarity=0.152 Sum_probs=67.5
Q ss_pred HHHHHHhhhhhcCCCeEEEec------------CCCCceEEEeec-hhhhhhhcc-----CCCceEEecCCCCCCCC-cc
Q 036440 15 SLALKYCKQIFERLGSLVDVG------------AFPCVKCTEFDQ-PHVVANLLD-----TNNLKYLADDFFQSIPP-VC 75 (181)
Q Consensus 15 ~~~l~~~~~d~~~~~~lvDvG------------~~P~l~~~~~Dl-P~Vv~~a~~-----~~ri~~~~gDff~~~P~-~d 75 (181)
..+++.+ +...-.+|+|+| .+|..+.+.+|. |..++.+.. ..+++++.+|+++..+. .|
T Consensus 186 ~~ll~~l--~~~~~~~VLDlGcG~G~~~~~la~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~~d~~~~~~~~fD 263 (343)
T 2pjd_A 186 QLLLSTL--TPHTKGKVLDVGCGAGVLSVAFARHSPKIRLTLCDVSAPAVEASRATLAANGVEGEVFASNVFSEVKGRFD 263 (343)
T ss_dssp HHHHHHS--CTTCCSBCCBTTCTTSHHHHHHHHHCTTCBCEEEESBHHHHHHHHHHHHHTTCCCEEEECSTTTTCCSCEE
T ss_pred HHHHHhc--CcCCCCeEEEecCccCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhCCCCEEEEccccccccCCee
Confidence 5566666 233456899999 679899999999 455655542 33467889999875444 68
Q ss_pred eEeccccchhhhHHhhhhhhhhcCCCccchhhhhhcccccceeeeeecc---CChHHHHHHHHHHHHHhccCC
Q 036440 76 MIPLRLGYSHIKIMIAFFIRLVVGRGRLHIFSWLNFMKRVINMQIIIHV---FGDEESVKILKICREAITSKA 145 (181)
Q Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~iLHd---w~D~~~~~iL~~~~~a~~~~g 145 (181)
++ +....+|. ++.+...++|+.++..++|||
T Consensus 264 ~I---------------------------------------v~~~~~~~g~~~~~~~~~~~l~~~~~~LkpgG 297 (343)
T 2pjd_A 264 MI---------------------------------------ISNPPFHDGMQTSLDAAQTLIRGAVRHLNSGG 297 (343)
T ss_dssp EE---------------------------------------EECCCCCSSSHHHHHHHHHHHHHHGGGEEEEE
T ss_pred EE---------------------------------------EECCCcccCccCCHHHHHHHHHHHHHhCCCCc
Confidence 88 77777776 456778899999999999999
|
| >1jsx_A Glucose-inhibited division protein B; methyltransferase fold, structural genomics, PSI, protein structure initiative; 2.40A {Escherichia coli} SCOP: c.66.1.20 | Back alignment and structure |
|---|
Probab=97.09 E-value=0.0012 Score=50.84 Aligned_cols=94 Identities=14% Similarity=0.109 Sum_probs=69.5
Q ss_pred CCeEEEec------------CCCCceEEEeec-hhhhhhhcc------CCCceEEecCCCCCCCC--cceEeccccchhh
Q 036440 28 LGSLVDVG------------AFPCVKCTEFDQ-PHVVANLLD------TNNLKYLADDFFQSIPP--VCMIPLRLGYSHI 86 (181)
Q Consensus 28 ~~~lvDvG------------~~P~l~~~~~Dl-P~Vv~~a~~------~~ri~~~~gDff~~~P~--~d~~~~~~~~~~~ 86 (181)
-.+++|+| .+|+.+.+.+|. |..++.+.. .+++++..+|+.+..|. .|++
T Consensus 66 ~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~D~i--------- 136 (207)
T 1jsx_A 66 GERFIDVGTGPGLPGIPLSIVRPEAHFTLLDSLGKRVRFLRQVQHELKLENIEPVQSRVEEFPSEPPFDGV--------- 136 (207)
T ss_dssp SSEEEEETCTTTTTHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHTTCSSEEEEECCTTTSCCCSCEEEE---------
T ss_pred CCeEEEECCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCeEEEecchhhCCccCCcCEE---------
Confidence 57999999 579999999998 666665532 23599999999875443 5777
Q ss_pred hHHhhhhhhhhcCCCccchhhhhhcccccceeeeeeccCChHHHHHHHHHHHHHhccCC------ccCCHHHHHHHHHhC
Q 036440 87 KIMIAFFIRLVVGRGRLHIFSWLNFMKRVINMQIIIHVFGDEESVKILKICREAITSKA------KLSTEKELESLFVEV 160 (181)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~iLHdw~D~~~~~iL~~~~~a~~~~g------~eRt~~E~~~Ll~~a 160 (181)
+.. .++ ...++|+.++..++||| .....++.++++.
T Consensus 137 ------------------------------~~~-~~~-----~~~~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~~~~-- 178 (207)
T 1jsx_A 137 ------------------------------ISR-AFA-----SLNDMVSWCHHLPGEQGRFYALKGQMPEDEIALLPE-- 178 (207)
T ss_dssp ------------------------------ECS-CSS-----SHHHHHHHHTTSEEEEEEEEEEESSCCHHHHHTSCT--
T ss_pred ------------------------------EEe-ccC-----CHHHHHHHHHHhcCCCcEEEEEeCCCchHHHHHHhc--
Confidence 322 122 23589999999999999 4467788888876
Q ss_pred CCeEEEEE
Q 036440 161 HFHHYKIT 168 (181)
Q Consensus 161 Gf~~~~i~ 168 (181)
||..+++.
T Consensus 179 g~~~~~~~ 186 (207)
T 1jsx_A 179 EYQVESVV 186 (207)
T ss_dssp TEEEEEEE
T ss_pred CCceeeee
Confidence 99988854
|
| >1zx0_A Guanidinoacetate N-methyltransferase; structural genomics, structural genomics consortium; HET: SAH; 1.86A {Homo sapiens} PDB: 3orh_A* 1xcj_A* 1xcl_A* 1p1c_A* 1p1b_A* 1khh_A* | Back alignment and structure |
|---|
Probab=97.08 E-value=0.00051 Score=54.71 Aligned_cols=100 Identities=16% Similarity=0.134 Sum_probs=69.9
Q ss_pred cCCCeEEEec-----------CCCCceEEEeec-hhhhhhhcc-----CCCceEEecCCCC---CCCC--cceEeccccc
Q 036440 26 ERLGSLVDVG-----------AFPCVKCTEFDQ-PHVVANLLD-----TNNLKYLADDFFQ---SIPP--VCMIPLRLGY 83 (181)
Q Consensus 26 ~~~~~lvDvG-----------~~P~l~~~~~Dl-P~Vv~~a~~-----~~ri~~~~gDff~---~~P~--~d~~~~~~~~ 83 (181)
..-.+||||| +++..+.+.+|+ |..++.+.. ..+++++.+|+.+ ++|. .|++
T Consensus 59 ~~~~~vLDiGcGtG~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~~~~~~fD~V------ 132 (236)
T 1zx0_A 59 SKGGRVLEVGFGMAIAASKVQEAPIDEHWIIECNDGVFQRLRDWAPRQTHKVIPLKGLWEDVAPTLPDGHFDGI------ 132 (236)
T ss_dssp TTCEEEEEECCTTSHHHHHHHTSCEEEEEEEECCHHHHHHHHHHGGGCSSEEEEEESCHHHHGGGSCTTCEEEE------
T ss_pred CCCCeEEEEeccCCHHHHHHHhcCCCeEEEEcCCHHHHHHHHHHHHhcCCCeEEEecCHHHhhcccCCCceEEE------
Confidence 3456899999 444457899998 566655532 4689999999875 3443 5777
Q ss_pred hhhhHHhhhhhhhhcCCCccchhhhhhccccccee-ee--eeccCChHHHHHHHHHHHHHhccCCccC------------
Q 036440 84 SHIKIMIAFFIRLVVGRGRLHIFSWLNFMKRVINM-QI--IIHVFGDEESVKILKICREAITSKAKLS------------ 148 (181)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~~--iLHdw~D~~~~~iL~~~~~a~~~~g~eR------------ 148 (181)
+. .. ..|++..+...++|+.++..++|||+..
T Consensus 133 ---------------------------------~~d~~~~~~~~~~~~~~~~~l~~~~r~LkpgG~l~~~~~~~~~~~~~ 179 (236)
T 1zx0_A 133 ---------------------------------LYDTYPLSEETWHTHQFNFIKNHAFRLLKPGGVLTYCNLTSWGELMK 179 (236)
T ss_dssp ---------------------------------EECCCCCBGGGTTTHHHHHHHHTHHHHEEEEEEEEECCHHHHHHHTT
T ss_pred ---------------------------------EECCcccchhhhhhhhHHHHHHHHHHhcCCCeEEEEEecCcHHHhhc
Confidence 22 12 4567766667789999999999999221
Q ss_pred ---------CHHHHHHHHHhCCCeE
Q 036440 149 ---------TEKELESLFVEVHFHH 164 (181)
Q Consensus 149 ---------t~~E~~~Ll~~aGf~~ 164 (181)
..+++...|.++||+.
T Consensus 180 ~~~~~~~~~~~~~~~~~l~~aGF~~ 204 (236)
T 1zx0_A 180 SKYSDITIMFEETQVPALLEAGFRR 204 (236)
T ss_dssp TTCSCHHHHHHHHTHHHHHHTTCCG
T ss_pred hhhhhhhhhccHHHHHHHHHCCCCC
Confidence 1245567889999984
|
| >2ld4_A Anamorsin; methyltransferase-like fold, alpha/beta fold, iron-sulfur PR biogenesis, apoptosis; NMR {Homo sapiens} PDB: 2yui_A | Back alignment and structure |
|---|
Probab=96.97 E-value=0.002 Score=48.68 Aligned_cols=93 Identities=13% Similarity=0.021 Sum_probs=67.6
Q ss_pred hcCCCeEEEecCCCCceEEEeec-hhhhhhhcc--CCCceEEecCCCCC-C---CC--cceEeccccchhhhHHhhhhhh
Q 036440 25 FERLGSLVDVGAFPCVKCTEFDQ-PHVVANLLD--TNNLKYLADDFFQS-I---PP--VCMIPLRLGYSHIKIMIAFFIR 95 (181)
Q Consensus 25 ~~~~~~lvDvG~~P~l~~~~~Dl-P~Vv~~a~~--~~ri~~~~gDff~~-~---P~--~d~~~~~~~~~~~~~~~~~~~~ 95 (181)
...-.+++|+|.-. +.+|. |..++.+.. ..++++..+|+-+. . |. .|++
T Consensus 10 ~~~g~~vL~~~~g~----v~vD~s~~ml~~a~~~~~~~~~~~~~d~~~~~~~~~~~~~fD~V------------------ 67 (176)
T 2ld4_A 10 ISAGQFVAVVWDKS----SPVEALKGLVDKLQALTGNEGRVSVENIKQLLQSAHKESSFDII------------------ 67 (176)
T ss_dssp CCTTSEEEEEECTT----SCHHHHHHHHHHHHHHTTTTSEEEEEEGGGGGGGCCCSSCEEEE------------------
T ss_pred CCCCCEEEEecCCc----eeeeCCHHHHHHHHHhcccCcEEEEechhcCccccCCCCCEeEE------------------
Confidence 34457899998432 12665 445555542 34699999998752 2 33 5888
Q ss_pred hhcCCCccchhhhhhcccccceeeeeeccC-ChHHHHHHHHHHHHHhccCC----------------ccCCHHHHHHHHH
Q 036440 96 LVVGRGRLHIFSWLNFMKRVINMQIIIHVF-GDEESVKILKICREAITSKA----------------KLSTEKELESLFV 158 (181)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~l~~iLHdw-~D~~~~~iL~~~~~a~~~~g----------------~eRt~~E~~~Ll~ 158 (181)
+...++|.. .|. .++|++++..++||| ..++.++|.++|+
T Consensus 68 ---------------------~~~~~l~~~~~~~--~~~l~~~~r~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~l~ 124 (176)
T 2ld4_A 68 ---------------------LSGLVPGSTTLHS--AEILAEIARILRPGGCLFLKEPVETAVDNNSKVKTASKLCSALT 124 (176)
T ss_dssp ---------------------EECCSTTCCCCCC--HHHHHHHHHHEEEEEEEEEEEEEESSSCSSSSSCCHHHHHHHHH
T ss_pred ---------------------EECChhhhcccCH--HHHHHHHHHHCCCCEEEEEEcccccccccccccCCHHHHHHHHH
Confidence 777888887 554 679999999999999 2357999999999
Q ss_pred hCCC
Q 036440 159 EVHF 162 (181)
Q Consensus 159 ~aGf 162 (181)
++||
T Consensus 125 ~aGf 128 (176)
T 2ld4_A 125 LSGL 128 (176)
T ss_dssp HTTC
T ss_pred HCCC
Confidence 9999
|
| >2gs9_A Hypothetical protein TT1324; methyl transferase, structural genomics, NPPSFA, national PR protein structural and functional analyses; HET: SAH; 2.60A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=96.95 E-value=0.0031 Score=48.64 Aligned_cols=91 Identities=12% Similarity=0.129 Sum_probs=64.8
Q ss_pred CCCeEEEec--------CCCCc-eEEEeec-hhhhhhhcc-CCCceEEecCCCC-CCCC--cceEeccccchhhhHHhhh
Q 036440 27 RLGSLVDVG--------AFPCV-KCTEFDQ-PHVVANLLD-TNNLKYLADDFFQ-SIPP--VCMIPLRLGYSHIKIMIAF 92 (181)
Q Consensus 27 ~~~~lvDvG--------~~P~l-~~~~~Dl-P~Vv~~a~~-~~ri~~~~gDff~-~~P~--~d~~~~~~~~~~~~~~~~~ 92 (181)
.-.+|+|+| .. +. +.+.+|. |..++.+.. .++++++.+|+.+ ++|. .|++
T Consensus 36 ~~~~vLdiG~G~G~~~~~l-~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~d~~~~~~~~~~fD~v--------------- 99 (211)
T 2gs9_A 36 PGESLLEVGAGTGYWLRRL-PYPQKVGVEPSEAMLAVGRRRAPEATWVRAWGEALPFPGESFDVV--------------- 99 (211)
T ss_dssp CCSEEEEETCTTCHHHHHC-CCSEEEEECCCHHHHHHHHHHCTTSEEECCCTTSCCSCSSCEEEE---------------
T ss_pred CCCeEEEECCCCCHhHHhC-CCCeEEEEeCCHHHHHHHHHhCCCcEEEEcccccCCCCCCcEEEE---------------
Confidence 557999999 23 34 8899998 556665543 3789999999875 2333 5888
Q ss_pred hhhhhcCCCccchhhhhhcccccceeeeeeccCChHHHHHHHHHHHHHhccCC---------------------------
Q 036440 93 FIRLVVGRGRLHIFSWLNFMKRVINMQIIIHVFGDEESVKILKICREAITSKA--------------------------- 145 (181)
Q Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~iLHdw~D~~~~~iL~~~~~a~~~~g--------------------------- 145 (181)
++..++|.++|. .++|++++..++|||
T Consensus 100 ------------------------~~~~~l~~~~~~--~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~ 153 (211)
T 2gs9_A 100 ------------------------LLFTTLEFVEDV--ERVLLEARRVLRPGGALVVGVLEALSPWAALYRRLGEKGVLP 153 (211)
T ss_dssp ------------------------EEESCTTTCSCH--HHHHHHHHHHEEEEEEEEEEEECTTSHHHHHHHHHHHTTCTT
T ss_pred ------------------------EEcChhhhcCCH--HHHHHHHHHHcCCCCEEEEEecCCcCcHHHHHHHHhhccCcc
Confidence 666677766543 457777777777776
Q ss_pred ----ccCCHHHHHHHHHhCC
Q 036440 146 ----KLSTEKELESLFVEVH 161 (181)
Q Consensus 146 ----~eRt~~E~~~Ll~~aG 161 (181)
+..|.+|++++|+ |
T Consensus 154 ~~~~~~~s~~~l~~~l~--G 171 (211)
T 2gs9_A 154 WAQARFLAREDLKALLG--P 171 (211)
T ss_dssp GGGCCCCCHHHHHHHHC--S
T ss_pred ccccccCCHHHHHHHhc--C
Confidence 3368999999998 7
|
| >3b3j_A Histone-arginine methyltransferase CARM1; protein arginine methyltransferase 4, APO catalytic domain, regulator, mRNA processing; 2.55A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=96.94 E-value=0.001 Score=60.33 Aligned_cols=82 Identities=12% Similarity=0.084 Sum_probs=59.0
Q ss_pred hcCCCeEEEec-----------CCCCceEEEeechhhhhhhc-------cCCCceEEecCCCC-CCCC-cceEeccccch
Q 036440 25 FERLGSLVDVG-----------AFPCVKCTEFDQPHVVANLL-------DTNNLKYLADDFFQ-SIPP-VCMIPLRLGYS 84 (181)
Q Consensus 25 ~~~~~~lvDvG-----------~~P~l~~~~~DlP~Vv~~a~-------~~~ri~~~~gDff~-~~P~-~d~~~~~~~~~ 84 (181)
...-.+|+||| +.|..+.+.+|+...++.+. ..++|+++.+|+.+ ++|. .|++
T Consensus 156 ~~~~~~VLDiGcGtG~la~~la~~~~~~V~gvD~s~~l~~A~~~~~~~gl~~~v~~~~~d~~~~~~~~~fD~I------- 228 (480)
T 3b3j_A 156 DFKDKIVLDVGCGSGILSFFAAQAGARKIYAVEASTMAQHAEVLVKSNNLTDRIVVIPGKVEEVSLPEQVDII------- 228 (480)
T ss_dssp GTTTCEEEEESCSTTHHHHHHHHTTCSEEEEEECHHHHHHHHHHHHHTTCTTTEEEEESCTTTCCCSSCEEEE-------
T ss_pred hcCCCEEEEecCcccHHHHHHHHcCCCEEEEEEcHHHHHHHHHHHHHcCCCCcEEEEECchhhCccCCCeEEE-------
Confidence 33457999999 66788999999987555443 24799999999997 5554 6888
Q ss_pred hhhHHhhhhhhhhcCCCccchhhhhhcccccceeeeeeccCChHHHHHHHHHHHHHhccCC
Q 036440 85 HIKIMIAFFIRLVVGRGRLHIFSWLNFMKRVINMQIIIHVFGDEESVKILKICREAITSKA 145 (181)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~iLHdw~D~~~~~iL~~~~~a~~~~g 145 (181)
+...++|.+.+++....|..++..++|||
T Consensus 229 --------------------------------vs~~~~~~~~~e~~~~~l~~~~~~LkpgG 257 (480)
T 3b3j_A 229 --------------------------------ISEPMGYMLFNERMLESYLHAKKYLKPSG 257 (480)
T ss_dssp --------------------------------ECCCCHHHHTCHHHHHHHHHGGGGEEEEE
T ss_pred --------------------------------EEeCchHhcCcHHHHHHHHHHHHhcCCCC
Confidence 44444555666666666666677777776
|
| >1yzh_A TRNA (guanine-N(7)-)-methyltransferase; alpha-beta-alpha sandwich, S-adenosylmeth dependent, structural genomics, PSI; 2.02A {Streptococcus pneumoniae} SCOP: c.66.1.53 | Back alignment and structure |
|---|
Probab=96.90 E-value=0.0062 Score=47.61 Aligned_cols=102 Identities=15% Similarity=0.079 Sum_probs=70.3
Q ss_pred CCeEEEec------------CCCCceEEEeec-hhhhhhhcc------CCCceEEecCCCCC---CCC--cceEeccccc
Q 036440 28 LGSLVDVG------------AFPCVKCTEFDQ-PHVVANLLD------TNNLKYLADDFFQS---IPP--VCMIPLRLGY 83 (181)
Q Consensus 28 ~~~lvDvG------------~~P~l~~~~~Dl-P~Vv~~a~~------~~ri~~~~gDff~~---~P~--~d~~~~~~~~ 83 (181)
-.++||+| .+|+.+.+.+|. |..++.+.. .++++++.+|+.+- +|. .|.+
T Consensus 42 ~~~vLDiGcG~G~~~~~la~~~p~~~v~gvD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~D~i------ 115 (214)
T 1yzh_A 42 NPIHVEVGSGKGAFVSGMAKQNPDINYIGIDIQKSVLSYALDKVLEVGVPNIKLLWVDGSDLTDYFEDGEIDRL------ 115 (214)
T ss_dssp CCEEEEESCTTSHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHCCSSEEEEECCSSCGGGTSCTTCCSEE------
T ss_pred CCeEEEEccCcCHHHHHHHHHCCCCCEEEEEcCHHHHHHHHHHHHHcCCCCEEEEeCCHHHHHhhcCCCCCCEE------
Confidence 46899999 789999999998 666665542 26899999999861 333 4666
Q ss_pred hhhhHHhhhhhhhhcCCCccchhhhhhcccccceeeeeeccCChH-------HHHHHHHHHHHHhccCC----ccC---C
Q 036440 84 SHIKIMIAFFIRLVVGRGRLHIFSWLNFMKRVINMQIIIHVFGDE-------ESVKILKICREAITSKA----KLS---T 149 (181)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~iLHdw~D~-------~~~~iL~~~~~a~~~~g----~eR---t 149 (181)
++.... .|... ....+|+.++..++||| ..- .
T Consensus 116 ---------------------------------~~~~~~-~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~ 161 (214)
T 1yzh_A 116 ---------------------------------YLNFSD-PWPKKRHEKRRLTYKTFLDTFKRILPENGEIHFKTDNRGL 161 (214)
T ss_dssp ---------------------------------EEESCC-CCCSGGGGGGSTTSHHHHHHHHHHSCTTCEEEEEESCHHH
T ss_pred ---------------------------------EEECCC-CccccchhhhccCCHHHHHHHHHHcCCCcEEEEEeCCHHH
Confidence 222111 12111 13579999999999999 221 2
Q ss_pred HHHHHHHHHhCCCeEEEEEE
Q 036440 150 EKELESLFVEVHFHHYKITP 169 (181)
Q Consensus 150 ~~E~~~Ll~~aGf~~~~i~~ 169 (181)
.++..++++++||..+.+..
T Consensus 162 ~~~~~~~~~~~g~~~~~~~~ 181 (214)
T 1yzh_A 162 FEYSLVSFSQYGMKLNGVWL 181 (214)
T ss_dssp HHHHHHHHHHHTCEEEEEES
T ss_pred HHHHHHHHHHCCCeeeeccc
Confidence 35667788999999888763
|
| >3evz_A Methyltransferase; NYSGXRC, NEW YORK SGX research CE structural genomics, protein structure initiative, pyrococc furiosus, PSI-2; 2.20A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=96.87 E-value=0.0088 Score=46.80 Aligned_cols=127 Identities=12% Similarity=0.048 Sum_probs=76.1
Q ss_pred hcCCCeEEEecCC-C-----------CceEEEeec-hhhhhhhcc-----CCCceEEecCC--CCCCCC--cceEecccc
Q 036440 25 FERLGSLVDVGAF-P-----------CVKCTEFDQ-PHVVANLLD-----TNNLKYLADDF--FQSIPP--VCMIPLRLG 82 (181)
Q Consensus 25 ~~~~~~lvDvG~~-P-----------~l~~~~~Dl-P~Vv~~a~~-----~~ri~~~~gDf--f~~~P~--~d~~~~~~~ 82 (181)
.+.-.+|+|+|.- . ..+.+.+|. |..++.+.. ..+++++.+|+ ++.+|. .|++..+.-
T Consensus 53 ~~~~~~vLDlG~G~~G~~~~~la~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~v~~~~~d~~~~~~~~~~~fD~I~~npp 132 (230)
T 3evz_A 53 LRGGEVALEIGTGHTAMMALMAEKFFNCKVTATEVDEEFFEYARRNIERNNSNVRLVKSNGGIIKGVVEGTFDVIFSAPP 132 (230)
T ss_dssp CCSSCEEEEECCTTTCHHHHHHHHHHCCEEEEEECCHHHHHHHHHHHHHTTCCCEEEECSSCSSTTTCCSCEEEEEECCC
T ss_pred cCCCCEEEEcCCCHHHHHHHHHHHhcCCEEEEEECCHHHHHHHHHHHHHhCCCcEEEeCCchhhhhcccCceeEEEECCC
Confidence 4456799999944 2 567899998 666665542 23899999996 555653 688744433
Q ss_pred chhhhHHhhhhhhhhcCCCccchhhhhhcccccceeeeeeccCChHHHHHHHHHHHHHhccCC--------ccCCHHHHH
Q 036440 83 YSHIKIMIAFFIRLVVGRGRLHIFSWLNFMKRVINMQIIIHVFGDEESVKILKICREAITSKA--------KLSTEKELE 154 (181)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~iLHdw~D~~~~~iL~~~~~a~~~~g--------~eRt~~E~~ 154 (181)
|....-.-. .+ ... .+..-.| ..+...++|+.+...++||| +..+.+++.
T Consensus 133 ~~~~~~~~~-----~~-----~~~----------~~~~~~~--~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~ 190 (230)
T 3evz_A 133 YYDKPLGRV-----LT-----ERE----------AIGGGKY--GEEFSVKLLEEAFDHLNPGGKVALYLPDKEKLLNVIK 190 (230)
T ss_dssp CC-----------------------------------CCSS--SCHHHHHHHHHHGGGEEEEEEEEEEEESCHHHHHHHH
T ss_pred CcCCccccc-----cC-----hhh----------hhccCcc--chHHHHHHHHHHHHHhCCCeEEEEEecccHhHHHHHH
Confidence 211100000 00 000 0000001 12334789999999999999 234568899
Q ss_pred HHHHhCCCeEEEEEEcCCC
Q 036440 155 SLFVEVHFHHYKITPLFGL 173 (181)
Q Consensus 155 ~Ll~~aGf~~~~i~~~~~~ 173 (181)
++++++||....+....|.
T Consensus 191 ~~l~~~g~~~~~~~~~~g~ 209 (230)
T 3evz_A 191 ERGIKLGYSVKDIKFKVGT 209 (230)
T ss_dssp HHHHHTTCEEEEEEECCCC
T ss_pred HHHHHcCCceEEEEecCCC
Confidence 9999999988777655553
|
| >3orh_A Guanidinoacetate N-methyltransferase; structura genomics, structural genomics consortium, SGC; HET: SAH; 1.86A {Homo sapiens} PDB: 1xcj_A* 1xcl_A* 1p1c_A* 1p1b_A* 1khh_A* | Back alignment and structure |
|---|
Probab=96.84 E-value=0.00067 Score=54.85 Aligned_cols=105 Identities=15% Similarity=0.109 Sum_probs=66.5
Q ss_pred CCCeEEEec-----------CCCCceEEEeec-hhhhhhhcc-----CCCceEEecCCCC---CCCC--cceEeccccch
Q 036440 27 RLGSLVDVG-----------AFPCVKCTEFDQ-PHVVANLLD-----TNNLKYLADDFFQ---SIPP--VCMIPLRLGYS 84 (181)
Q Consensus 27 ~~~~lvDvG-----------~~P~l~~~~~Dl-P~Vv~~a~~-----~~ri~~~~gDff~---~~P~--~d~~~~~~~~~ 84 (181)
.-.+||||| ++...+.+.+|+ |.+++.++. ..+++++.+|+-+ .+|. -|.+..+.-
T Consensus 60 ~G~rVLdiG~G~G~~~~~~~~~~~~~v~~id~~~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~FD~i~~D~~-- 137 (236)
T 3orh_A 60 KGGRVLEVGFGMAIAASKVQEAPIDEHWIIECNDGVFQRLRDWAPRQTHKVIPLKGLWEDVAPTLPDGHFDGILYDTY-- 137 (236)
T ss_dssp TCEEEEEECCTTSHHHHHHTTSCEEEEEEEECCHHHHHHHHHHGGGCSSEEEEEESCHHHHGGGSCTTCEEEEEECCC--
T ss_pred CCCeEEEECCCccHHHHHHHHhCCcEEEEEeCCHHHHHHHHHHHhhCCCceEEEeehHHhhcccccccCCceEEEeee--
Confidence 446899999 333346788887 778877652 5678888888753 3443 366511110
Q ss_pred hhhHHhhhhhhhhcCCCccchhhhhhcccccceeeeeeccCChHHHHHHHHHHHHHhccCCc------------------
Q 036440 85 HIKIMIAFFIRLVVGRGRLHIFSWLNFMKRVINMQIIIHVFGDEESVKILKICREAITSKAK------------------ 146 (181)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~iLHdw~D~~~~~iL~~~~~a~~~~g~------------------ 146 (181)
.....+ +.-.+..++++.++..|+|||+
T Consensus 138 --------------------------------~~~~~~--~~~~~~~~~~~e~~rvLkPGG~l~f~~~~~~~~~~~~~~~ 183 (236)
T 3orh_A 138 --------------------------------PLSEET--WHTHQFNFIKNHAFRLLKPGGVLTYCNLTSWGELMKSKYS 183 (236)
T ss_dssp --------------------------------CCBGGG--TTTHHHHHHHHTHHHHEEEEEEEEECCHHHHHHHTTTTCS
T ss_pred --------------------------------ecccch--hhhcchhhhhhhhhheeCCCCEEEEEecCCchhhhhhhhh
Confidence 122222 3334456688888999999981
Q ss_pred ---cCCHHHHHHHHHhCCCeEEEE
Q 036440 147 ---LSTEKELESLFVEVHFHHYKI 167 (181)
Q Consensus 147 ---eRt~~E~~~Ll~~aGf~~~~i 167 (181)
....+.+...|.++||+...+
T Consensus 184 ~~~~~~~~~~~~~L~eaGF~~~~i 207 (236)
T 3orh_A 184 DITIMFEETQVPALLEAGFRRENI 207 (236)
T ss_dssp CHHHHHHHHTHHHHHHHTCCGGGE
T ss_pred hhhhhhHHHHHHHHHHcCCeEEEE
Confidence 133556778889999986543
|
| >2ozv_A Hypothetical protein ATU0636; structural genomics, predicted transferase, predicted O-methyltransferase, PFAM PF05175; HET: MSE; 1.70A {Agrobacterium tumefaciens str} | Back alignment and structure |
|---|
Probab=96.83 E-value=0.0064 Score=49.80 Aligned_cols=132 Identities=12% Similarity=0.134 Sum_probs=79.0
Q ss_pred hcCCCeEEEec------------CCCCceEEEeec-hhhhhhhc----------cCCCceEEecCCCCC--------CCC
Q 036440 25 FERLGSLVDVG------------AFPCVKCTEFDQ-PHVVANLL----------DTNNLKYLADDFFQS--------IPP 73 (181)
Q Consensus 25 ~~~~~~lvDvG------------~~P~l~~~~~Dl-P~Vv~~a~----------~~~ri~~~~gDff~~--------~P~ 73 (181)
...-.+|||+| ++|..+.+.+|+ |..++.+. ..+|++++.+|+.+. +|.
T Consensus 34 ~~~~~~VLDlG~G~G~~~l~la~~~~~~~v~gvDi~~~~~~~a~~n~~~~~~~~l~~~v~~~~~D~~~~~~~~~~~~~~~ 113 (260)
T 2ozv_A 34 DDRACRIADLGAGAGAAGMAVAARLEKAEVTLYERSQEMAEFARRSLELPDNAAFSARIEVLEADVTLRAKARVEAGLPD 113 (260)
T ss_dssp CCSCEEEEECCSSSSHHHHHHHHHCTTEEEEEEESSHHHHHHHHHHTTSGGGTTTGGGEEEEECCTTCCHHHHHHTTCCT
T ss_pred ccCCCEEEEeCChHhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHhhhhCCCcceEEEEeCCHHHHhhhhhhhccCC
Confidence 34456899999 789999999998 56665443 134799999999875 333
Q ss_pred --cceEeccccchhhhHHhhhhhhhhcCCCccchhhhhhcccccceeeeeeccCChHHHHHHHHHHHHHhccCC------
Q 036440 74 --VCMIPLRLGYSHIKIMIAFFIRLVVGRGRLHIFSWLNFMKRVINMQIIIHVFGDEESVKILKICREAITSKA------ 145 (181)
Q Consensus 74 --~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~iLHdw~D~~~~~iL~~~~~a~~~~g------ 145 (181)
.|++..+--|.... .+.++. ..+.+-+.........+++.+...++|+|
T Consensus 114 ~~fD~Vv~nPPy~~~~------~~~~~~-----------------~~~~~a~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 170 (260)
T 2ozv_A 114 EHFHHVIMNPPYNDAG------DRRTPD-----------------ALKAEAHAMTEGLFEDWIRTASAIMVSGGQLSLIS 170 (260)
T ss_dssp TCEEEEEECCCC--------------------------------------------CCHHHHHHHHHHHEEEEEEEEEEE
T ss_pred CCcCEEEECCCCcCCC------CCCCcC-----------------HHHHHHhhcCcCCHHHHHHHHHHHcCCCCEEEEEE
Confidence 58884443321000 000000 00112222333446789999999999999
Q ss_pred ccCCHHHHHHHHHhCCCeEEEEEEcCC---C---CeEEEEE
Q 036440 146 KLSTEKELESLFVEVHFHHYKITPLFG---L---PSLIEVY 180 (181)
Q Consensus 146 ~eRt~~E~~~Ll~~aGf~~~~i~~~~~---~---~~viE~~ 180 (181)
.....+++.+++.+. |..+++.+... . .-+||+.
T Consensus 171 ~~~~~~~~~~~l~~~-~~~~~i~~v~~~~~~~~~~~lv~~~ 210 (260)
T 2ozv_A 171 RPQSVAEIIAACGSR-FGGLEITLIHPRPGEDAVRMLVTAI 210 (260)
T ss_dssp CGGGHHHHHHHHTTT-EEEEEEEEEESSTTSCCCEEEEEEE
T ss_pred cHHHHHHHHHHHHhc-CCceEEEEEcCCCCCCceEEEEEEE
Confidence 444677888888875 88877765432 1 2466664
|
| >2vdw_A Vaccinia virus capping enzyme D1 subunit; nucleotidyltransferase, S-adenosyl-L-methionine, RNA metabolism, mRNA processing, methyltransferase, poxvirus; HET: SAH; 2.70A {Vaccinia virus} | Back alignment and structure |
|---|
Probab=96.78 E-value=0.0065 Score=51.42 Aligned_cols=29 Identities=21% Similarity=0.268 Sum_probs=22.4
Q ss_pred eeeeeecc-CChHHHHHHHHHHHHHhccCC
Q 036440 117 NMQIIIHV-FGDEESVKILKICREAITSKA 145 (181)
Q Consensus 117 ~l~~iLHd-w~D~~~~~iL~~~~~a~~~~g 145 (181)
....++|. |++++..++|++++..++|||
T Consensus 134 ~~~~~lhy~~~~~~~~~~l~~~~r~LkpGG 163 (302)
T 2vdw_A 134 DWQFAIHYSFHPRHYATVMNNLSELTASGG 163 (302)
T ss_dssp EEESCGGGTCSTTTHHHHHHHHHHHEEEEE
T ss_pred EECchHHHhCCHHHHHHHHHHHHHHcCCCC
Confidence 66667775 565556789999999999988
|
| >3gnl_A Uncharacterized protein, DUF633, LMOF2365_1472; structural genomics, PSI-2, protein structure initiative; 1.50A {Listeria monocytogenes str} | Back alignment and structure |
|---|
Probab=96.78 E-value=0.013 Score=49.33 Aligned_cols=99 Identities=9% Similarity=-0.009 Sum_probs=74.5
Q ss_pred CCCeEEEec------------CCCCceEEEeec-hhhhhhhc-------cCCCceEEecCCCCCCCC---cceEeccccc
Q 036440 27 RLGSLVDVG------------AFPCVKCTEFDQ-PHVVANLL-------DTNNLKYLADDFFQSIPP---VCMIPLRLGY 83 (181)
Q Consensus 27 ~~~~lvDvG------------~~P~l~~~~~Dl-P~Vv~~a~-------~~~ri~~~~gDff~~~P~---~d~~~~~~~~ 83 (181)
.-.+|+||| ..|..+++..|. |..++.|. ..+||++..+|.++.++. .|++
T Consensus 21 ~g~~VlDIGtGsG~l~i~la~~~~~~~V~avDi~~~al~~A~~N~~~~gl~~~I~v~~gD~l~~~~~~~~~D~I------ 94 (244)
T 3gnl_A 21 KNERIADIGSDHAYLPCFAVKNQTASFAIAGEVVDGPFQSAQKQVRSSGLTEQIDVRKGNGLAVIEKKDAIDTI------ 94 (244)
T ss_dssp SSEEEEEETCSTTHHHHHHHHTTSEEEEEEEESSHHHHHHHHHHHHHTTCTTTEEEEECSGGGGCCGGGCCCEE------
T ss_pred CCCEEEEECCccHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCceEEEEecchhhccCccccccEE------
Confidence 446899999 778889999998 44555443 367999999999988763 5776
Q ss_pred hhhhHHhhhhhhhhcCCCccchhhhhhcccccceeeeeeccCChHHHHHHHHHHHHHhccCC-----ccCCHHHHHHHHH
Q 036440 84 SHIKIMIAFFIRLVVGRGRLHIFSWLNFMKRVINMQIIIHVFGDEESVKILKICREAITSKA-----KLSTEKELESLFV 158 (181)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~iLHdw~D~~~~~iL~~~~~a~~~~g-----~eRt~~E~~~Ll~ 158 (181)
++..+ +-+--.+||......+++++ .-...++.+++|.
T Consensus 95 ---------------------------------viagm----Gg~lI~~IL~~~~~~L~~~~~lIlq~~~~~~~lr~~L~ 137 (244)
T 3gnl_A 95 ---------------------------------VIAGM----GGTLIRTILEEGAAKLAGVTKLILQPNIAAWQLREWSE 137 (244)
T ss_dssp ---------------------------------EEEEE----CHHHHHHHHHHTGGGGTTCCEEEEEESSCHHHHHHHHH
T ss_pred ---------------------------------EEeCC----chHHHHHHHHHHHHHhCCCCEEEEEcCCChHHHHHHHH
Confidence 43333 24556678888888887776 4457899999999
Q ss_pred hCCCeEEEEE
Q 036440 159 EVHFHHYKIT 168 (181)
Q Consensus 159 ~aGf~~~~i~ 168 (181)
+.||.+++-.
T Consensus 138 ~~Gf~i~~E~ 147 (244)
T 3gnl_A 138 QNNWLITSEA 147 (244)
T ss_dssp HHTEEEEEEE
T ss_pred HCCCEEEEEE
Confidence 9999986544
|
| >4hg2_A Methyltransferase type 11; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MES; 1.60A {Anaeromyxobacter dehalogenans} | Back alignment and structure |
|---|
Probab=96.70 E-value=0.012 Score=48.87 Aligned_cols=76 Identities=18% Similarity=0.217 Sum_probs=58.0
Q ss_pred CCeEEEec----------CCCCceEEEeec-hhhhhhhccCCCceEEecCCCC-CCCC--cceEeccccchhhhHHhhhh
Q 036440 28 LGSLVDVG----------AFPCVKCTEFDQ-PHVVANLLDTNNLKYLADDFFQ-SIPP--VCMIPLRLGYSHIKIMIAFF 93 (181)
Q Consensus 28 ~~~lvDvG----------~~P~l~~~~~Dl-P~Vv~~a~~~~ri~~~~gDff~-~~P~--~d~~~~~~~~~~~~~~~~~~ 93 (181)
-.++|||| +--..+.+.+|. |..++.+...++|+++.+|+-+ ++|. .|++
T Consensus 40 ~~~vLDvGcGtG~~~~~l~~~~~~v~gvD~s~~ml~~a~~~~~v~~~~~~~e~~~~~~~sfD~v---------------- 103 (257)
T 4hg2_A 40 RGDALDCGCGSGQASLGLAEFFERVHAVDPGEAQIRQALRHPRVTYAVAPAEDTGLPPASVDVA---------------- 103 (257)
T ss_dssp SSEEEEESCTTTTTHHHHHTTCSEEEEEESCHHHHHTCCCCTTEEEEECCTTCCCCCSSCEEEE----------------
T ss_pred CCCEEEEcCCCCHHHHHHHHhCCEEEEEeCcHHhhhhhhhcCCceeehhhhhhhcccCCcccEE----------------
Confidence 36899999 112346788897 5677788778899999999865 3554 5888
Q ss_pred hhhhcCCCccchhhhhhcccccceeeeeeccCChHHHHHHHHHHHHHhccCC
Q 036440 94 IRLVVGRGRLHIFSWLNFMKRVINMQIIIHVFGDEESVKILKICREAITSKA 145 (181)
Q Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~~l~~iLHdw~D~~~~~iL~~~~~a~~~~g 145 (181)
+...++|-++.+ +.|+.++..++|||
T Consensus 104 -----------------------~~~~~~h~~~~~---~~~~e~~rvLkpgG 129 (257)
T 4hg2_A 104 -----------------------IAAQAMHWFDLD---RFWAELRRVARPGA 129 (257)
T ss_dssp -----------------------EECSCCTTCCHH---HHHHHHHHHEEEEE
T ss_pred -----------------------EEeeehhHhhHH---HHHHHHHHHcCCCC
Confidence 778888876544 47889999999999
|
| >1ej0_A FTSJ; methyltransferase, adoMet, adenosyl methionine, heat shock proteins, 23S ribosomal RNA; HET: SAM; 1.50A {Escherichia coli} SCOP: c.66.1.2 PDB: 1eiz_A* | Back alignment and structure |
|---|
Probab=96.64 E-value=0.011 Score=42.86 Aligned_cols=107 Identities=16% Similarity=0.198 Sum_probs=74.6
Q ss_pred HHHHhhhhhcCCCeEEEec------------CC-CCceEEEeechhhhhhhccCCCceEEecCCCCC---------CCC-
Q 036440 17 ALKYCKQIFERLGSLVDVG------------AF-PCVKCTEFDQPHVVANLLDTNNLKYLADDFFQS---------IPP- 73 (181)
Q Consensus 17 ~l~~~~~d~~~~~~lvDvG------------~~-P~l~~~~~DlP~Vv~~a~~~~ri~~~~gDff~~---------~P~- 73 (181)
+++.+. -...-.+++|+| .+ |+.+.+.+|+...+ . .+++++..+|+.+. +|.
T Consensus 13 ~~~~~~-~~~~~~~vLd~G~G~G~~~~~l~~~~~~~~~v~~~D~~~~~-~---~~~~~~~~~d~~~~~~~~~~~~~~~~~ 87 (180)
T 1ej0_A 13 IQQSDK-LFKPGMTVVDLGAAPGGWSQYVVTQIGGKGRIIACDLLPMD-P---IVGVDFLQGDFRDELVMKALLERVGDS 87 (180)
T ss_dssp HHHHHC-CCCTTCEEEEESCTTCHHHHHHHHHHCTTCEEEEEESSCCC-C---CTTEEEEESCTTSHHHHHHHHHHHTTC
T ss_pred HHHHhC-CCCCCCeEEEeCCCCCHHHHHHHHHhCCCCeEEEEECcccc-c---cCcEEEEEcccccchhhhhhhccCCCC
Confidence 444442 134567999999 33 67899999987622 2 27899999999864 442
Q ss_pred -cceEeccccchhhhHHhhhhhhhhcCCCccchhhhhhcccccceeeeeeccCChH---H------HHHHHHHHHHHhcc
Q 036440 74 -VCMIPLRLGYSHIKIMIAFFIRLVVGRGRLHIFSWLNFMKRVINMQIIIHVFGDE---E------SVKILKICREAITS 143 (181)
Q Consensus 74 -~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~iLHdw~D~---~------~~~iL~~~~~a~~~ 143 (181)
.|++ +....+|...+. . ..++|+.+...++|
T Consensus 88 ~~D~i---------------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~ 128 (180)
T 1ej0_A 88 KVQVV---------------------------------------MSDMAPNMSGTPAVDIPRAMYLVELALEMCRDVLAP 128 (180)
T ss_dssp CEEEE---------------------------------------EECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEE
T ss_pred ceeEE---------------------------------------EECCCccccCCCccchHHHHHHHHHHHHHHHHHcCC
Confidence 5777 555555544332 1 26889999999999
Q ss_pred CC-------ccCCHHHHHHHHHhCCCeEEEEE
Q 036440 144 KA-------KLSTEKELESLFVEVHFHHYKIT 168 (181)
Q Consensus 144 ~g-------~eRt~~E~~~Ll~~aGf~~~~i~ 168 (181)
+| ...+..++...+.+. |+.+++.
T Consensus 129 gG~l~~~~~~~~~~~~~~~~~~~~-~~~~~~~ 159 (180)
T 1ej0_A 129 GGSFVVKVFQGEGFDEYLREIRSL-FTKVKVR 159 (180)
T ss_dssp EEEEEEEEESSTTHHHHHHHHHHH-EEEEEEE
T ss_pred CcEEEEEEecCCcHHHHHHHHHHh-hhhEEee
Confidence 99 455677888888885 8888765
|
| >3bzb_A Uncharacterized protein; RED ALGA, protein structure initiat center for eukaryotic structural genomics, CESG, structural genomics; 2.79A {Cyanidioschyzon merolae} | Back alignment and structure |
|---|
Probab=96.61 E-value=0.013 Score=48.55 Aligned_cols=102 Identities=9% Similarity=0.080 Sum_probs=69.4
Q ss_pred CCCeEEEec-----------CCCCceEEEeec--hhhhhhhcc------------C----CCceEEecCCCCC---C---
Q 036440 27 RLGSLVDVG-----------AFPCVKCTEFDQ--PHVVANLLD------------T----NNLKYLADDFFQS---I--- 71 (181)
Q Consensus 27 ~~~~lvDvG-----------~~P~l~~~~~Dl--P~Vv~~a~~------------~----~ri~~~~gDff~~---~--- 71 (181)
.-.+|+|+| +....+++.+|+ |..++.+.. . +++++...|+-+. +
T Consensus 79 ~~~~vLDlG~G~G~~~~~~a~~~~~~v~~~D~s~~~~~~~a~~n~~~N~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~ 158 (281)
T 3bzb_A 79 AGKTVCELGAGAGLVSIVAFLAGADQVVATDYPDPEILNSLESNIREHTANSCSSETVKRASPKVVPYRWGDSPDSLQRC 158 (281)
T ss_dssp TTCEEEETTCTTSHHHHHHHHTTCSEEEEEECSCHHHHHHHHHHHHTTCC----------CCCEEEECCTTSCTHHHHHH
T ss_pred CCCeEEEecccccHHHHHHHHcCCCEEEEEeCCCHHHHHHHHHHHHHhhhhhcccccCCCCCeEEEEecCCCccHHHHhh
Confidence 446899999 344448999999 566654431 1 3788876665432 2
Q ss_pred ---CCcceEeccccchhhhHHhhhhhhhhcCCCccchhhhhhcccccceeeeeeccCChHHHHHHHHHHHHHhc---c--
Q 036440 72 ---PPVCMIPLRLGYSHIKIMIAFFIRLVVGRGRLHIFSWLNFMKRVINMQIIIHVFGDEESVKILKICREAIT---S-- 143 (181)
Q Consensus 72 ---P~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~iLHdw~D~~~~~iL~~~~~a~~---~-- 143 (181)
...|++ ++..++|+. +....+|+.+...++ |
T Consensus 159 ~~~~~fD~I---------------------------------------i~~dvl~~~--~~~~~ll~~l~~~Lk~~~p~~ 197 (281)
T 3bzb_A 159 TGLQRFQVV---------------------------------------LLADLLSFH--QAHDALLRSVKMLLALPANDP 197 (281)
T ss_dssp HSCSSBSEE---------------------------------------EEESCCSCG--GGHHHHHHHHHHHBCCTTTCT
T ss_pred ccCCCCCEE---------------------------------------EEeCcccCh--HHHHHHHHHHHHHhcccCCCC
Confidence 125776 777888764 445678999999999 8
Q ss_pred CC------cc------CCHHHHHHHHHhCC-CeEEEEEE
Q 036440 144 KA------KL------STEKELESLFVEVH-FHHYKITP 169 (181)
Q Consensus 144 ~g------~e------Rt~~E~~~Ll~~aG-f~~~~i~~ 169 (181)
+| .. .+..++.+.++++| |++.++..
T Consensus 198 gG~l~v~~~~~~~~~~~~~~~~~~~l~~~G~f~v~~~~~ 236 (281)
T 3bzb_A 198 TAVALVTFTHHRPHLAERDLAFFRLVNADGALIAEPWLS 236 (281)
T ss_dssp TCEEEEEECC--------CTHHHHHHHHSTTEEEEEEEC
T ss_pred CCEEEEEEEeeecccchhHHHHHHHHHhcCCEEEEEecc
Confidence 88 11 12457778899999 99988843
|
| >3p2e_A 16S rRNA methylase; methyltransferase, transferase, NPMA; HET: SAH; 1.68A {Escherichia coli} PDB: 3p2i_A 3p2k_A* 3pb3_A* 3mte_A* | Back alignment and structure |
|---|
Probab=96.60 E-value=0.024 Score=45.66 Aligned_cols=47 Identities=11% Similarity=0.063 Sum_probs=33.4
Q ss_pred cCCCeEEEec------------CCCCceEEEeech-h-hhhhh---cc------CCCceEEecCCCCCCCC
Q 036440 26 ERLGSLVDVG------------AFPCVKCTEFDQP-H-VVANL---LD------TNNLKYLADDFFQSIPP 73 (181)
Q Consensus 26 ~~~~~lvDvG------------~~P~l~~~~~DlP-~-Vv~~a---~~------~~ri~~~~gDff~~~P~ 73 (181)
..-.+||||| ++|+.+++.+|+- . .++.+ .. .++++++.+|.-+ +|.
T Consensus 23 ~~~~~vLDiGCG~G~~~~~la~~~~~~~v~GvD~s~~~ml~~A~~A~~~~~~~~~~~v~~~~~d~~~-l~~ 92 (225)
T 3p2e_A 23 QFDRVHIDLGTGDGRNIYKLAINDQNTFYIGIDPVKENLFDISKKIIKKPSKGGLSNVVFVIAAAES-LPF 92 (225)
T ss_dssp TCSEEEEEETCTTSHHHHHHHHTCTTEEEEEECSCCGGGHHHHHHHTSCGGGTCCSSEEEECCBTTB-CCG
T ss_pred CCCCEEEEEeccCcHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHHHHHcCCCCeEEEEcCHHH-hhh
Confidence 3456899999 4999999999984 4 43433 32 3578999999864 353
|
| >4dcm_A Ribosomal RNA large subunit methyltransferase G; 23S rRNA (guanine1835-N2)-methyltransferase; HET: SAM; 2.30A {Escherichia coli} | Back alignment and structure |
|---|
Probab=96.59 E-value=0.00045 Score=60.55 Aligned_cols=89 Identities=16% Similarity=0.256 Sum_probs=63.3
Q ss_pred HHHHHhhhhhcCCCeEEEec------------CCCCceEEEeec-hhhhhhhcc-------C--CCceEEecCCCCCCCC
Q 036440 16 LALKYCKQIFERLGSLVDVG------------AFPCVKCTEFDQ-PHVVANLLD-------T--NNLKYLADDFFQSIPP 73 (181)
Q Consensus 16 ~~l~~~~~d~~~~~~lvDvG------------~~P~l~~~~~Dl-P~Vv~~a~~-------~--~ri~~~~gDff~~~P~ 73 (181)
.+++..+ ...-.+|+|+| ++|..+.+.+|. |..++.+.. . .++++..+|+++.+|.
T Consensus 213 ~ll~~l~--~~~~~~VLDlGcG~G~~s~~la~~~p~~~V~gvD~s~~al~~Ar~n~~~ngl~~~~~v~~~~~D~~~~~~~ 290 (375)
T 4dcm_A 213 FFMQHLP--ENLEGEIVDLGCGNGVIGLTLLDKNPQAKVVFVDESPMAVASSRLNVETNMPEALDRCEFMINNALSGVEP 290 (375)
T ss_dssp HHHHTCC--CSCCSEEEEETCTTCHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHCGGGGGGEEEEECSTTTTCCT
T ss_pred HHHHhCc--ccCCCeEEEEeCcchHHHHHHHHHCCCCEEEEEECcHHHHHHHHHHHHHcCCCcCceEEEEechhhccCCC
Confidence 4555552 23337999999 889999999998 666665532 2 2688899999998774
Q ss_pred --cceEeccccchhhhHHhhhhhhhhcCCCccchhhhhhcccccceeeeeecc---CChHHHHHHHHHHHHHhccCC
Q 036440 74 --VCMIPLRLGYSHIKIMIAFFIRLVVGRGRLHIFSWLNFMKRVINMQIIIHV---FGDEESVKILKICREAITSKA 145 (181)
Q Consensus 74 --~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~iLHd---w~D~~~~~iL~~~~~a~~~~g 145 (181)
.|++ ++.-.+|. ..++...++++.+...++|||
T Consensus 291 ~~fD~I---------------------------------------i~nppfh~~~~~~~~~~~~~l~~~~~~LkpgG 328 (375)
T 4dcm_A 291 FRFNAV---------------------------------------LCNPPFHQQHALTDNVAWEMFHHARRCLKING 328 (375)
T ss_dssp TCEEEE---------------------------------------EECCCC-------CCHHHHHHHHHHHHEEEEE
T ss_pred CCeeEE---------------------------------------EECCCcccCcccCHHHHHHHHHHHHHhCCCCc
Confidence 6888 45444552 345566689999999999999
|
| >1xdz_A Methyltransferase GIDB; MCSG, protein structure initiative, structural genomics, methyltransferase fold, PSI; 1.60A {Bacillus subtilis} SCOP: c.66.1.20 | Back alignment and structure |
|---|
Probab=96.59 E-value=0.0033 Score=50.29 Aligned_cols=99 Identities=14% Similarity=0.194 Sum_probs=68.6
Q ss_pred cCCCeEEEec----------C--CCCceEEEeec-hhhhhhhcc------CCCceEEecCCCCC-C----C-CcceEecc
Q 036440 26 ERLGSLVDVG----------A--FPCVKCTEFDQ-PHVVANLLD------TNNLKYLADDFFQS-I----P-PVCMIPLR 80 (181)
Q Consensus 26 ~~~~~lvDvG----------~--~P~l~~~~~Dl-P~Vv~~a~~------~~ri~~~~gDff~~-~----P-~~d~~~~~ 80 (181)
..-.+|+|+| + +|+.+.+.+|. |..++.+.. -.+++++.+|+.+- . + ..|++
T Consensus 69 ~~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~V--- 145 (240)
T 1xdz_A 69 NQVNTICDVGAGAGFPSLPIKICFPHLHVTIVDSLNKRITFLEKLSEALQLENTTFCHDRAETFGQRKDVRESYDIV--- 145 (240)
T ss_dssp GGCCEEEEECSSSCTTHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHTCSSEEEEESCHHHHTTCTTTTTCEEEE---
T ss_pred CCCCEEEEecCCCCHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEeccHHHhcccccccCCccEE---
Confidence 3557999999 3 89999999998 555554432 24699999998652 1 1 25777
Q ss_pred ccchhhhHHhhhhhhhhcCCCccchhhhhhcccccceeeeeeccCChHHHHHHHHHHHHHhccCC------ccCCH---H
Q 036440 81 LGYSHIKIMIAFFIRLVVGRGRLHIFSWLNFMKRVINMQIIIHVFGDEESVKILKICREAITSKA------KLSTE---K 151 (181)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~iLHdw~D~~~~~iL~~~~~a~~~~g------~eRt~---~ 151 (181)
+...+ .....+++.+...++||| ..+.. +
T Consensus 146 ------------------------------------~~~~~------~~~~~~l~~~~~~LkpgG~l~~~~g~~~~~~~~ 183 (240)
T 1xdz_A 146 ------------------------------------TARAV------ARLSVLSELCLPLVKKNGLFVALKAASAEEELN 183 (240)
T ss_dssp ------------------------------------EEECC------SCHHHHHHHHGGGEEEEEEEEEEECC-CHHHHH
T ss_pred ------------------------------------EEecc------CCHHHHHHHHHHhcCCCCEEEEEeCCCchHHHH
Confidence 33321 235678999999999999 22233 3
Q ss_pred HHHHHHHhCCCeEEEEEE
Q 036440 152 ELESLFVEVHFHHYKITP 169 (181)
Q Consensus 152 E~~~Ll~~aGf~~~~i~~ 169 (181)
++...++++||...++.+
T Consensus 184 ~~~~~l~~~g~~~~~~~~ 201 (240)
T 1xdz_A 184 AGKKAITTLGGELENIHS 201 (240)
T ss_dssp HHHHHHHHTTEEEEEEEE
T ss_pred HHHHHHHHcCCeEeEEEE
Confidence 566778899999887754
|
| >2plw_A Ribosomal RNA methyltransferase, putative; malaria, SAM, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.70A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=96.55 E-value=0.019 Score=43.82 Aligned_cols=37 Identities=16% Similarity=0.157 Sum_probs=28.7
Q ss_pred HHHHHHHHHHhccCC-------ccCCHHHHHHHHHhCCCeEEEEE
Q 036440 131 VKILKICREAITSKA-------KLSTEKELESLFVEVHFHHYKIT 168 (181)
Q Consensus 131 ~~iL~~~~~a~~~~g-------~eRt~~E~~~Ll~~aGf~~~~i~ 168 (181)
.++|+.+...++||| ...+..++...+++ .|..+++.
T Consensus 134 ~~~l~~~~~~LkpgG~lv~~~~~~~~~~~l~~~l~~-~f~~v~~~ 177 (201)
T 2plw_A 134 LSITHFMEQYINIGGTYIVKMYLGSQTNNLKTYLKG-MFQLVHTT 177 (201)
T ss_dssp HHHHHHHHHHEEEEEEEEEEEECSTTHHHHHHHHHT-TEEEEEEC
T ss_pred HHHHHHHHHHccCCCEEEEEEeCCCCHHHHHHHHHH-HHheEEEE
Confidence 358999999999999 44567788888776 58877765
|
| >1af7_A Chemotaxis receptor methyltransferase CHER; chemotaxis receptor methylation; HET: SAH; 2.00A {Salmonella typhimurium} SCOP: a.58.1.1 c.66.1.8 PDB: 1bc5_A* | Back alignment and structure |
|---|
Probab=96.53 E-value=0.0031 Score=53.36 Aligned_cols=48 Identities=10% Similarity=0.198 Sum_probs=43.1
Q ss_pred CceEEecCCCCC-CC---CcceEeccccchhhhHHhhhhhhhhcCCCccchhhhhhcccccceeeeeeccCChHHHHHHH
Q 036440 59 NLKYLADDFFQS-IP---PVCMIPLRLGYSHIKIMIAFFIRLVVGRGRLHIFSWLNFMKRVINMQIIIHVFGDEESVKIL 134 (181)
Q Consensus 59 ri~~~~gDff~~-~P---~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~iLHdw~D~~~~~iL 134 (181)
+|++..+|+++. +| .-|++ +.+++||.++++...+++
T Consensus 195 ~V~F~~~dl~~~~~~~~~~fDlI---------------------------------------~crnvliyf~~~~~~~vl 235 (274)
T 1af7_A 195 YVEFSSVNLLEKQYNVPGPFDAI---------------------------------------FCRNVMIYFDKTTQEDIL 235 (274)
T ss_dssp TEEEEECCTTCSSCCCCCCEEEE---------------------------------------EECSSGGGSCHHHHHHHH
T ss_pred cCeEEecccCCCCCCcCCCeeEE---------------------------------------EECCchHhCCHHHHHHHH
Confidence 799999999983 55 25888 889999999999999999
Q ss_pred HHHHHHhccCC
Q 036440 135 KICREAITSKA 145 (181)
Q Consensus 135 ~~~~~a~~~~g 145 (181)
++++.+++|||
T Consensus 236 ~~~~~~L~pgG 246 (274)
T 1af7_A 236 RRFVPLLKPDG 246 (274)
T ss_dssp HHHGGGEEEEE
T ss_pred HHHHHHhCCCc
Confidence 99999999999
|
| >1g8a_A Fibrillarin-like PRE-rRNA processing protein; rRNA binding, RNA binding, structural genomics, BSGC structure funded by NIH; 1.40A {Pyrococcus horikoshii} SCOP: c.66.1.3 PDB: 2nnw_B 3nmu_F* 3nvk_I* 3nvm_B 1pry_A | Back alignment and structure |
|---|
Probab=96.50 E-value=0.019 Score=44.94 Aligned_cols=103 Identities=13% Similarity=0.025 Sum_probs=67.8
Q ss_pred hcCCCeEEEec------------C-CCCceEEEeechh-hhh----hhccCCCceEEecCCCCC-----CCC-cceEecc
Q 036440 25 FERLGSLVDVG------------A-FPCVKCTEFDQPH-VVA----NLLDTNNLKYLADDFFQS-----IPP-VCMIPLR 80 (181)
Q Consensus 25 ~~~~~~lvDvG------------~-~P~l~~~~~DlP~-Vv~----~a~~~~ri~~~~gDff~~-----~P~-~d~~~~~ 80 (181)
+..-.+|+|+| . -|..+.+.+|.-. .++ .+...++++++.+|+.+. ++. .|++
T Consensus 71 ~~~~~~vLDlG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~D~v--- 147 (227)
T 1g8a_A 71 IKPGKSVLYLGIASGTTASHVSDIVGWEGKIFGIEFSPRVLRELVPIVEERRNIVPILGDATKPEEYRALVPKVDVI--- 147 (227)
T ss_dssp CCTTCEEEEETTTSTTHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHSSCTTEEEEECCTTCGGGGTTTCCCEEEE---
T ss_pred CCCCCEEEEEeccCCHHHHHHHHHhCCCeEEEEEECCHHHHHHHHHHHhccCCCEEEEccCCCcchhhcccCCceEE---
Confidence 44557899999 3 2567889999843 333 333347899999999862 122 4666
Q ss_pred ccchhhhHHhhhhhhhhcCCCccchhhhhhcccccceeeeeeccC-ChHHHHHHHHHHHHHhccCC--------cc----
Q 036440 81 LGYSHIKIMIAFFIRLVVGRGRLHIFSWLNFMKRVINMQIIIHVF-GDEESVKILKICREAITSKA--------KL---- 147 (181)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~iLHdw-~D~~~~~iL~~~~~a~~~~g--------~e---- 147 (181)
+ ++. ..+....+|++++..++||| ..
T Consensus 148 ------------------------------------~-----~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~ 186 (227)
T 1g8a_A 148 ------------------------------------F-----EDVAQPTQAKILIDNAEVYLKRGGYGMIAVKSRSIDVT 186 (227)
T ss_dssp ------------------------------------E-----ECCCSTTHHHHHHHHHHHHEEEEEEEEEEEEGGGTCTT
T ss_pred ------------------------------------E-----ECCCCHhHHHHHHHHHHHhcCCCCEEEEEEecCCCCCC
Confidence 3 222 23334455999999999999 11
Q ss_pred -----CCHHHHHHHHHhCCCeEEEEEEcCCC
Q 036440 148 -----STEKELESLFVEVHFHHYKITPLFGL 173 (181)
Q Consensus 148 -----Rt~~E~~~Ll~~aGf~~~~i~~~~~~ 173 (181)
.+.+|++.+ .++ |+.++...+...
T Consensus 187 ~~~~~~~~~~l~~l-~~~-f~~~~~~~~~~~ 215 (227)
T 1g8a_A 187 KEPEQVFREVEREL-SEY-FEVIERLNLEPY 215 (227)
T ss_dssp SCHHHHHHHHHHHH-HTT-SEEEEEEECTTT
T ss_pred CChhhhhHHHHHHH-Hhh-ceeeeEeccCcc
Confidence 123677777 778 999988876543
|
| >3duw_A OMT, O-methyltransferase, putative; alternating of alpha and beta with complex SAH; HET: SAH; 1.20A {Bacillus cereus} PDB: 3dul_A* | Back alignment and structure |
|---|
Probab=96.49 E-value=0.0081 Score=46.89 Aligned_cols=77 Identities=4% Similarity=0.025 Sum_probs=57.4
Q ss_pred hcCCCeEEEec------------CCC-CceEEEeec-hhhhhhhc-------cCCCceEEecCCCCCCCC--------cc
Q 036440 25 FERLGSLVDVG------------AFP-CVKCTEFDQ-PHVVANLL-------DTNNLKYLADDFFQSIPP--------VC 75 (181)
Q Consensus 25 ~~~~~~lvDvG------------~~P-~l~~~~~Dl-P~Vv~~a~-------~~~ri~~~~gDff~~~P~--------~d 75 (181)
.....+|||+| ++| +.+.+.+|+ |..++.+. ..++++++.+|..+.+|. .|
T Consensus 56 ~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~fD 135 (223)
T 3duw_A 56 IQGARNILEIGTLGGYSTIWLARGLSSGGRVVTLEASEKHADIARSNIERANLNDRVEVRTGLALDSLQQIENEKYEPFD 135 (223)
T ss_dssp HHTCSEEEEECCTTSHHHHHHHTTCCSSCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHHHHHTTCCCCS
T ss_pred hhCCCEEEEecCCccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHHhcCCCCcC
Confidence 45668999999 677 789999998 66666553 356899999999764332 45
Q ss_pred eEeccccchhhhHHhhhhhhhhcCCCccchhhhhhcccccceeeeeeccCChHHHHHHHHHHHHHhccCC
Q 036440 76 MIPLRLGYSHIKIMIAFFIRLVVGRGRLHIFSWLNFMKRVINMQIIIHVFGDEESVKILKICREAITSKA 145 (181)
Q Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~iLHdw~D~~~~~iL~~~~~a~~~~g 145 (181)
++ + .|.+.+....+|+.+...++|||
T Consensus 136 ~v---------------------------------------~-----~d~~~~~~~~~l~~~~~~L~pgG 161 (223)
T 3duw_A 136 FI---------------------------------------F-----IDADKQNNPAYFEWALKLSRPGT 161 (223)
T ss_dssp EE---------------------------------------E-----ECSCGGGHHHHHHHHHHTCCTTC
T ss_pred EE---------------------------------------E-----EcCCcHHHHHHHHHHHHhcCCCc
Confidence 55 2 23445566789999999999999
|
| >3iei_A Leucine carboxyl methyltransferase 1; LCMT-1, S-adenosyl-L-methionine; HET: SAH MES; 1.90A {Homo sapiens} PDB: 3p71_T* 3mnt_A* 3o7w_A* | Back alignment and structure |
|---|
Probab=96.44 E-value=0.07 Score=46.57 Aligned_cols=25 Identities=0% Similarity=-0.001 Sum_probs=20.7
Q ss_pred ccCCHHHHHHHHHhCCCeEEEEEEc
Q 036440 146 KLSTEKELESLFVEVHFHHYKITPL 170 (181)
Q Consensus 146 ~eRt~~E~~~Ll~~aGf~~~~i~~~ 170 (181)
.-.|.++..+.|.++||+.++++.+
T Consensus 257 ~y~t~~~~~~r~~~~Gw~~~~~~d~ 281 (334)
T 3iei_A 257 TCKSLESQKERLLSNGWETASAVDM 281 (334)
T ss_dssp GGGCHHHHHHHHHTTTCSEEEEEEH
T ss_pred cCCCHHHHHHHHHHcCCCcceeecH
Confidence 3467799999999999999887754
|
| >3ntv_A MW1564 protein; rossmann fold, putative methyltransferase, transferase; HET: MSE; 1.55A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=96.42 E-value=0.013 Score=46.79 Aligned_cols=78 Identities=10% Similarity=0.184 Sum_probs=57.8
Q ss_pred hhcCCCeEEEec------------CCCCceEEEeec-hhhhhhhc-------cCCCceEEecCCCCCCC----C-cceEe
Q 036440 24 IFERLGSLVDVG------------AFPCVKCTEFDQ-PHVVANLL-------DTNNLKYLADDFFQSIP----P-VCMIP 78 (181)
Q Consensus 24 d~~~~~~lvDvG------------~~P~l~~~~~Dl-P~Vv~~a~-------~~~ri~~~~gDff~~~P----~-~d~~~ 78 (181)
......+|||+| ++|..+.+.+|+ |..++.+. ..++++++.+|+.+.+| . .|++
T Consensus 68 ~~~~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~fD~V- 146 (232)
T 3ntv_A 68 RMNNVKNILEIGTAIGYSSMQFASISDDIHVTTIERNETMIQYAKQNLATYHFENQVRIIEGNALEQFENVNDKVYDMI- 146 (232)
T ss_dssp HHHTCCEEEEECCSSSHHHHHHHTTCTTCEEEEEECCHHHHHHHHHHHHHTTCTTTEEEEESCGGGCHHHHTTSCEEEE-
T ss_pred hhcCCCEEEEEeCchhHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECCHHHHHHhhccCCccEE-
Confidence 345678999999 568999999998 66666554 24699999999988655 2 5666
Q ss_pred ccccchhhhHHhhhhhhhhcCCCccchhhhhhcccccceeeeeeccCChHHHHHHHHHHHHHhccCC
Q 036440 79 LRLGYSHIKIMIAFFIRLVVGRGRLHIFSWLNFMKRVINMQIIIHVFGDEESVKILKICREAITSKA 145 (181)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~iLHdw~D~~~~~iL~~~~~a~~~~g 145 (181)
+ .+.+.+....+|+.+...++|||
T Consensus 147 --------------------------------------~-----~~~~~~~~~~~l~~~~~~LkpgG 170 (232)
T 3ntv_A 147 --------------------------------------F-----IDAAKAQSKKFFEIYTPLLKHQG 170 (232)
T ss_dssp --------------------------------------E-----EETTSSSHHHHHHHHGGGEEEEE
T ss_pred --------------------------------------E-----EcCcHHHHHHHHHHHHHhcCCCe
Confidence 3 23344456678888888888888
|
| >3hp7_A Hemolysin, putative; structural genomics, APC64019, PSI-2, protein STR initiative, midwest center for structural genomics, MCSG; HET: MSE; 1.53A {Streptococcus thermophilus} | Back alignment and structure |
|---|
Probab=96.39 E-value=0.0075 Score=51.87 Aligned_cols=31 Identities=19% Similarity=0.247 Sum_probs=23.0
Q ss_pred CCHHHHHHHHHhCCCeEEEEE--EcCCCCeEEE
Q 036440 148 STEKELESLFVEVHFHHYKIT--PLFGLPSLIE 178 (181)
Q Consensus 148 Rt~~E~~~Ll~~aGf~~~~i~--~~~~~~~viE 178 (181)
++.+++..+++++||.+..+. |+.|..+=+|
T Consensus 210 ~~~~~v~~~~~~~Gf~v~~~~~spi~g~~gn~e 242 (291)
T 3hp7_A 210 KVLETVTAFAVDYGFSVKGLDFSPIQGGHGNIE 242 (291)
T ss_dssp HHHHHHHHHHHHTTEEEEEEEECSSCCGGGCCC
T ss_pred HHHHHHHHHHHHCCCEEEEEEECCCCCCCcCHH
Confidence 477889999999999988776 5555544333
|
| >2pxx_A Uncharacterized protein MGC2408; structural genomics consortium, SGC, methyltransferase, LOC84291, transferase; HET: SAH; 1.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.30 E-value=0.013 Score=44.66 Aligned_cols=98 Identities=11% Similarity=0.110 Sum_probs=67.2
Q ss_pred hcCCCeEEEec------------CCCCceEEEeec-hhhhhhhcc----CCCceEEecCCCC-CCCC--cceEeccccch
Q 036440 25 FERLGSLVDVG------------AFPCVKCTEFDQ-PHVVANLLD----TNNLKYLADDFFQ-SIPP--VCMIPLRLGYS 84 (181)
Q Consensus 25 ~~~~~~lvDvG------------~~P~l~~~~~Dl-P~Vv~~a~~----~~ri~~~~gDff~-~~P~--~d~~~~~~~~~ 84 (181)
...-.+|||+| ..+. +.+.+|. |..++.+.. .+++++..+|+.+ ++|. .|++
T Consensus 40 ~~~~~~vLdiGcG~G~~~~~l~~~~~~-~v~~~D~s~~~~~~a~~~~~~~~~i~~~~~d~~~~~~~~~~fD~v------- 111 (215)
T 2pxx_A 40 LRPEDRILVLGCGNSALSYELFLGGFP-NVTSVDYSSVVVAAMQACYAHVPQLRWETMDVRKLDFPSASFDVV------- 111 (215)
T ss_dssp CCTTCCEEEETCTTCSHHHHHHHTTCC-CEEEEESCHHHHHHHHHHTTTCTTCEEEECCTTSCCSCSSCEEEE-------
T ss_pred cCCCCeEEEECCCCcHHHHHHHHcCCC-cEEEEeCCHHHHHHHHHhcccCCCcEEEEcchhcCCCCCCcccEE-------
Confidence 34567999999 3343 7889998 566665542 3689999999986 3443 5887
Q ss_pred hhhHHhhhhhhhhcCCCccchhhhhhcccccceeeeeeccCC-------------hHHHHHHHHHHHHHhccCC----cc
Q 036440 85 HIKIMIAFFIRLVVGRGRLHIFSWLNFMKRVINMQIIIHVFG-------------DEESVKILKICREAITSKA----KL 147 (181)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~iLHdw~-------------D~~~~~iL~~~~~a~~~~g----~e 147 (181)
+...++|... .+...++|++++..++||| .+
T Consensus 112 --------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~li~~~ 159 (215)
T 2pxx_A 112 --------------------------------LEKGTLDALLAGERDPWTVSSEGVHTVDQVLSEVSRVLVPGGRFISMT 159 (215)
T ss_dssp --------------------------------EEESHHHHHTTTCSCTTSCCHHHHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred --------------------------------EECcchhhhccccccccccccchhHHHHHHHHHHHHhCcCCCEEEEEe
Confidence 4444444332 4566899999999999999 33
Q ss_pred CCHHH-HHHHHHhCCC
Q 036440 148 STEKE-LESLFVEVHF 162 (181)
Q Consensus 148 Rt~~E-~~~Ll~~aGf 162 (181)
.+... .+.++...||
T Consensus 160 ~~~~~~~~~~~~~~~~ 175 (215)
T 2pxx_A 160 SAAPHFRTRHYAQAYY 175 (215)
T ss_dssp SCCHHHHHHHHCCGGG
T ss_pred CCCcHHHHHHHhcccc
Confidence 33333 4556767777
|
| >3htx_A HEN1; HEN1, small RNA methyltransferase, protein-RNA complex; HET: SAH; 3.10A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=96.25 E-value=0.066 Score=53.06 Aligned_cols=81 Identities=12% Similarity=0.097 Sum_probs=62.9
Q ss_pred cCCCeEEEec------------CC-CCceEEEeec-hhhhhhhcc------------CCCceEEecCCCCC-CC--Ccce
Q 036440 26 ERLGSLVDVG------------AF-PCVKCTEFDQ-PHVVANLLD------------TNNLKYLADDFFQS-IP--PVCM 76 (181)
Q Consensus 26 ~~~~~lvDvG------------~~-P~l~~~~~Dl-P~Vv~~a~~------------~~ri~~~~gDff~~-~P--~~d~ 76 (181)
..-.+||||| .. |..+.+.+|+ |..++.+.. .++++++.+|+.+- .+ ..|+
T Consensus 720 ~~g~rVLDVGCGTG~lai~LAr~g~p~a~VtGVDIS~emLe~AReRLa~~lnAkr~gl~nVefiqGDa~dLp~~d~sFDl 799 (950)
T 3htx_A 720 SSASTLVDFGCGSGSLLDSLLDYPTSLQTIIGVDISPKGLARAAKMLHVKLNKEACNVKSATLYDGSILEFDSRLHDVDI 799 (950)
T ss_dssp SCCSEEEEETCSSSHHHHHHTSSCCCCCEEEEEESCHHHHHHHHHHHHHHTTTTCSSCSEEEEEESCTTSCCTTSCSCCE
T ss_pred cCCCEEEEECCCCCHHHHHHHHhCCCCCeEEEEECCHHHHHHHHHHhhhccchhhcCCCceEEEECchHhCCcccCCeeE
Confidence 3567999999 44 5578999998 566665532 25899999999863 22 2688
Q ss_pred EeccccchhhhHHhhhhhhhhcCCCccchhhhhhcccccceeeeeeccCChHHHHHHHHHHHHHhccCC
Q 036440 77 IPLRLGYSHIKIMIAFFIRLVVGRGRLHIFSWLNFMKRVINMQIIIHVFGDEESVKILKICREAITSKA 145 (181)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~iLHdw~D~~~~~iL~~~~~a~~~~g 145 (181)
+ ++..++|.+++....++++.+...++||.
T Consensus 800 V---------------------------------------V~~eVLeHL~dp~l~~~L~eI~RvLKPG~ 829 (950)
T 3htx_A 800 G---------------------------------------TCLEVIEHMEEDQACEFGEKVLSLFHPKL 829 (950)
T ss_dssp E---------------------------------------EEESCGGGSCHHHHHHHHHHHHHTTCCSE
T ss_pred E---------------------------------------EEeCchhhCChHHHHHHHHHHHHHcCCCE
Confidence 8 88899999999998899999998888764
|
| >3tfw_A Putative O-methyltransferase; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium; 1.88A {Klebsiella pneumoniae subsp} | Back alignment and structure |
|---|
Probab=96.22 E-value=0.011 Score=47.76 Aligned_cols=77 Identities=9% Similarity=0.107 Sum_probs=57.9
Q ss_pred hcCCCeEEEec------------CCC-CceEEEeec-hhhhhhhc-------cCCCceEEecCCCCCCC------CcceE
Q 036440 25 FERLGSLVDVG------------AFP-CVKCTEFDQ-PHVVANLL-------DTNNLKYLADDFFQSIP------PVCMI 77 (181)
Q Consensus 25 ~~~~~~lvDvG------------~~P-~l~~~~~Dl-P~Vv~~a~-------~~~ri~~~~gDff~~~P------~~d~~ 77 (181)
.....+||||| ++| +.+.+.+|+ |..++.+. ..++|+++.+|..+.+| ..|++
T Consensus 61 ~~~~~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~l~~~~~~~~fD~V 140 (248)
T 3tfw_A 61 LTQAKRILEIGTLGGYSTIWMARELPADGQLLTLEADAHHAQVARENLQLAGVDQRVTLREGPALQSLESLGECPAFDLI 140 (248)
T ss_dssp HHTCSEEEEECCTTSHHHHHHHTTSCTTCEEEEEECCHHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHTCCSCCCCSEE
T ss_pred hcCCCEEEEecCCchHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHhcCCCCCeEEE
Confidence 45678999999 677 889999999 66666553 25699999999876433 24666
Q ss_pred eccccchhhhHHhhhhhhhhcCCCccchhhhhhcccccceeeeeeccCChHHHHHHHHHHHHHhccCC
Q 036440 78 PLRLGYSHIKIMIAFFIRLVVGRGRLHIFSWLNFMKRVINMQIIIHVFGDEESVKILKICREAITSKA 145 (181)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~iLHdw~D~~~~~iL~~~~~a~~~~g 145 (181)
++ |.+.......|+.+...++|||
T Consensus 141 ---------------------------------------~~-----d~~~~~~~~~l~~~~~~LkpGG 164 (248)
T 3tfw_A 141 ---------------------------------------FI-----DADKPNNPHYLRWALRYSRPGT 164 (248)
T ss_dssp ---------------------------------------EE-----CSCGGGHHHHHHHHHHTCCTTC
T ss_pred ---------------------------------------EE-----CCchHHHHHHHHHHHHhcCCCe
Confidence 33 3345566778999999999999
|
| >2avn_A Ubiquinone/menaquinone biosynthesis methyltransfe related protein; ubiquinone/menaquinone biosynthesis methyltransferase-relate protein; HET: SAI; 2.35A {Thermotoga maritima} SCOP: c.66.1.41 | Back alignment and structure |
|---|
Probab=96.22 E-value=0.0057 Score=49.23 Aligned_cols=51 Identities=8% Similarity=0.070 Sum_probs=32.5
Q ss_pred CCCeEEEec----------CCCCceEEEeec-hhhhhhhccCCCceEEecCCCC-CCCC--cceE
Q 036440 27 RLGSLVDVG----------AFPCVKCTEFDQ-PHVVANLLDTNNLKYLADDFFQ-SIPP--VCMI 77 (181)
Q Consensus 27 ~~~~lvDvG----------~~P~l~~~~~Dl-P~Vv~~a~~~~ri~~~~gDff~-~~P~--~d~~ 77 (181)
...+|||+| +--+.+.+.+|. |..++.+.....-.++.+|+.+ ++|. .|++
T Consensus 54 ~~~~vLDiGcG~G~~~~~l~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~d~~~~~~~~~~fD~v 118 (260)
T 2avn_A 54 NPCRVLDLGGGTGKWSLFLQERGFEVVLVDPSKEMLEVAREKGVKNVVEAKAEDLPFPSGAFEAV 118 (260)
T ss_dssp SCCEEEEETCTTCHHHHHHHTTTCEEEEEESCHHHHHHHHHHTCSCEEECCTTSCCSCTTCEEEE
T ss_pred CCCeEEEeCCCcCHHHHHHHHcCCeEEEEeCCHHHHHHHHhhcCCCEEECcHHHCCCCCCCEEEE
Confidence 557999999 112568899998 5666665432111378888875 2333 4777
|
| >1ne2_A Hypothetical protein TA1320; structural genomics, conserved hypothetical protein, PSI, protein structure initiative; 1.75A {Thermoplasma acidophilum} SCOP: c.66.1.32 | Back alignment and structure |
|---|
Probab=96.16 E-value=0.014 Score=44.84 Aligned_cols=99 Identities=13% Similarity=0.117 Sum_probs=67.4
Q ss_pred CCCeEEEec-----------CCCCceEEEeec-hhhhhhhcc-CCCceEEecCCCCCCCC-cceEeccccchhhhHHhhh
Q 036440 27 RLGSLVDVG-----------AFPCVKCTEFDQ-PHVVANLLD-TNNLKYLADDFFQSIPP-VCMIPLRLGYSHIKIMIAF 92 (181)
Q Consensus 27 ~~~~lvDvG-----------~~P~l~~~~~Dl-P~Vv~~a~~-~~ri~~~~gDff~~~P~-~d~~~~~~~~~~~~~~~~~ 92 (181)
.-.+|+|+| ..+..+.+.+|. |..++.+.. ..+++++.+|+.+ +|. .|++
T Consensus 51 ~~~~vlD~gcG~G~~~~~l~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~d~~~-~~~~~D~v--------------- 114 (200)
T 1ne2_A 51 GGRSVIDAGTGNGILACGSYLLGAESVTAFDIDPDAIETAKRNCGGVNFMVADVSE-ISGKYDTW--------------- 114 (200)
T ss_dssp BTSEEEEETCTTCHHHHHHHHTTBSEEEEEESCHHHHHHHHHHCTTSEEEECCGGG-CCCCEEEE---------------
T ss_pred CCCEEEEEeCCccHHHHHHHHcCCCEEEEEECCHHHHHHHHHhcCCCEEEECcHHH-CCCCeeEE---------------
Confidence 457899999 335557999998 677776653 2389999999987 454 6888
Q ss_pred hhhhhcCCCccchhhhhhcccccceeeeeeccCChHHHHHHHHHHHHHhccCC-----ccCCHHHHHHHHHhCCCeEEEE
Q 036440 93 FIRLVVGRGRLHIFSWLNFMKRVINMQIIIHVFGDEESVKILKICREAITSKA-----KLSTEKELESLFVEVHFHHYKI 167 (181)
Q Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~iLHdw~D~~~~~iL~~~~~a~~~~g-----~eRt~~E~~~Ll~~aGf~~~~i 167 (181)
++.-.+|.+.+....++|+.+...+ ++ ...+.+.+.+++.++| +...+
T Consensus 115 ------------------------~~~~p~~~~~~~~~~~~l~~~~~~~--g~~~~~~~~~~~~~~~~~~~~~g-~~~~~ 167 (200)
T 1ne2_A 115 ------------------------IMNPPFGSVVKHSDRAFIDKAFETS--MWIYSIGNAKARDFLRREFSARG-DVFRE 167 (200)
T ss_dssp ------------------------EECCCC-------CHHHHHHHHHHE--EEEEEEEEGGGHHHHHHHHHHHE-EEEEE
T ss_pred ------------------------EECCCchhccCchhHHHHHHHHHhc--CcEEEEEcCchHHHHHHHHHHCC-CEEEE
Confidence 6777777777766667888887776 33 3456788899999999 65544
Q ss_pred E
Q 036440 168 T 168 (181)
Q Consensus 168 ~ 168 (181)
.
T Consensus 168 ~ 168 (200)
T 1ne2_A 168 E 168 (200)
T ss_dssp E
T ss_pred E
Confidence 3
|
| >2y1w_A Histone-arginine methyltransferase CARM1; histone modification; HET: SFG 849; 2.10A {Homo sapiens} PDB: 2y1x_A* 3b3f_A* 3b3g_A 2v74_B* 2v7e_A | Back alignment and structure |
|---|
Probab=96.15 E-value=0.0093 Score=51.06 Aligned_cols=81 Identities=12% Similarity=0.103 Sum_probs=55.6
Q ss_pred cCCCeEEEec-----------CCCCceEEEeechhhhhhhc-------cCCCceEEecCCCC-CCCC-cceEeccccchh
Q 036440 26 ERLGSLVDVG-----------AFPCVKCTEFDQPHVVANLL-------DTNNLKYLADDFFQ-SIPP-VCMIPLRLGYSH 85 (181)
Q Consensus 26 ~~~~~lvDvG-----------~~P~l~~~~~DlP~Vv~~a~-------~~~ri~~~~gDff~-~~P~-~d~~~~~~~~~~ 85 (181)
..-.+||||| +.+..+.+.+|....++.+. ..++++++.+|+.+ ++|. .|++
T Consensus 49 ~~~~~VLDiGcGtG~ls~~la~~g~~~V~~vD~s~~~~~a~~~~~~~~l~~~v~~~~~d~~~~~~~~~~D~I-------- 120 (348)
T 2y1w_A 49 FKDKIVLDVGCGSGILSFFAAQAGARKIYAVEASTMAQHAEVLVKSNNLTDRIVVIPGKVEEVSLPEQVDII-------- 120 (348)
T ss_dssp TTTCEEEEETCTTSHHHHHHHHTTCSEEEEEECSTHHHHHHHHHHHTTCTTTEEEEESCTTTCCCSSCEEEE--------
T ss_pred CCcCEEEEcCCCccHHHHHHHhCCCCEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcchhhCCCCCceeEE--------
Confidence 3457999999 45667889999866554442 24789999999986 3454 6887
Q ss_pred hhHHhhhhhhhhcCCCccchhhhhhcccccceeeeeeccCChHHHHHHHHHHHHHhccCC
Q 036440 86 IKIMIAFFIRLVVGRGRLHIFSWLNFMKRVINMQIIIHVFGDEESVKILKICREAITSKA 145 (181)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~iLHdw~D~~~~~iL~~~~~a~~~~g 145 (181)
+...++|.+..+...+.++.++..++|||
T Consensus 121 -------------------------------vs~~~~~~~~~~~~~~~l~~~~~~LkpgG 149 (348)
T 2y1w_A 121 -------------------------------ISEPMGYMLFNERMLESYLHAKKYLKPSG 149 (348)
T ss_dssp -------------------------------EECCCBTTBTTTSHHHHHHHGGGGEEEEE
T ss_pred -------------------------------EEeCchhcCChHHHHHHHHHHHhhcCCCe
Confidence 44445555555666666666666677766
|
| >2fca_A TRNA (guanine-N(7)-)-methyltransferase; 2.10A {Bacillus subtilis} SCOP: c.66.1.53 | Back alignment and structure |
|---|
Probab=96.12 E-value=0.024 Score=44.76 Aligned_cols=102 Identities=15% Similarity=0.144 Sum_probs=67.2
Q ss_pred CCeEEEec------------CCCCceEEEeec-hhhhhhhcc------CCCceEEecCCCCC---CCC--cceEeccccc
Q 036440 28 LGSLVDVG------------AFPCVKCTEFDQ-PHVVANLLD------TNNLKYLADDFFQS---IPP--VCMIPLRLGY 83 (181)
Q Consensus 28 ~~~lvDvG------------~~P~l~~~~~Dl-P~Vv~~a~~------~~ri~~~~gDff~~---~P~--~d~~~~~~~~ 83 (181)
-.++|||| .+|+.+.+.+|. |..++.+.. .++++++.+|..+- +|. .|.+
T Consensus 39 ~~~vLDiGcG~G~~~~~la~~~p~~~v~giD~s~~~l~~a~~~~~~~~~~nv~~~~~d~~~l~~~~~~~~~d~v------ 112 (213)
T 2fca_A 39 NPIHIEVGTGKGQFISGMAKQNPDINYIGIELFKSVIVTAVQKVKDSEAQNVKLLNIDADTLTDVFEPGEVKRV------ 112 (213)
T ss_dssp CCEEEEECCTTSHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHSCCSSEEEECCCGGGHHHHCCTTSCCEE------
T ss_pred CceEEEEecCCCHHHHHHHHHCCCCCEEEEEechHHHHHHHHHHHHcCCCCEEEEeCCHHHHHhhcCcCCcCEE------
Confidence 46899999 689999999998 556655432 35799999998751 333 3544
Q ss_pred hhhhHHhhhhhhhhcCCCccchhhhhhcccccceeeeeeccCChH-------HHHHHHHHHHHHhccCCcc----CC---
Q 036440 84 SHIKIMIAFFIRLVVGRGRLHIFSWLNFMKRVINMQIIIHVFGDE-------ESVKILKICREAITSKAKL----ST--- 149 (181)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~iLHdw~D~-------~~~~iL~~~~~a~~~~g~e----Rt--- 149 (181)
++... --|... ....+|+.++..++|||.. -.
T Consensus 113 ---------------------------------~~~~~-~p~~~~~~~~~rl~~~~~l~~~~~~LkpgG~l~~~td~~~~ 158 (213)
T 2fca_A 113 ---------------------------------YLNFS-DPWPKKRHEKRRLTYSHFLKKYEEVMGKGGSIHFKTDNRGL 158 (213)
T ss_dssp ---------------------------------EEESC-CCCCSGGGGGGSTTSHHHHHHHHHHHTTSCEEEEEESCHHH
T ss_pred ---------------------------------EEECC-CCCcCccccccccCcHHHHHHHHHHcCCCCEEEEEeCCHHH
Confidence 11100 012211 0257899999999999922 12
Q ss_pred HHHHHHHHHhCCCeEEEEEE
Q 036440 150 EKELESLFVEVHFHHYKITP 169 (181)
Q Consensus 150 ~~E~~~Ll~~aGf~~~~i~~ 169 (181)
.++..+.++++||....+..
T Consensus 159 ~~~~~~~~~~~g~~~~~~~~ 178 (213)
T 2fca_A 159 FEYSLKSFSEYGLLLTYVSL 178 (213)
T ss_dssp HHHHHHHHHHHTCEEEEEES
T ss_pred HHHHHHHHHHCCCccccccc
Confidence 34557788899998877653
|
| >3eey_A Putative rRNA methylase; rRNA methylation, S-adenosyl-methionine, structural genomics structure initiative, PSI; HET: SAM; 2.20A {Clostridium thermocellum atcc 27405} | Back alignment and structure |
|---|
Probab=96.10 E-value=0.012 Score=44.87 Aligned_cols=115 Identities=16% Similarity=0.196 Sum_probs=70.1
Q ss_pred hcCCCeEEEec------------CC-CCceEEEeec-hhhhhhhcc-------CCCceEEecCCCCC--C-CC-cceEec
Q 036440 25 FERLGSLVDVG------------AF-PCVKCTEFDQ-PHVVANLLD-------TNNLKYLADDFFQS--I-PP-VCMIPL 79 (181)
Q Consensus 25 ~~~~~~lvDvG------------~~-P~l~~~~~Dl-P~Vv~~a~~-------~~ri~~~~gDff~~--~-P~-~d~~~~ 79 (181)
...-.+|+|+| ++ |..+.+.+|. |..++.+.. .++++++.+|+.+- . +. .|++..
T Consensus 20 ~~~~~~vLDlGcG~G~~~~~l~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~fD~v~~ 99 (197)
T 3eey_A 20 VKEGDTVVDATCGNGNDTAFLASLVGENGRVFGFDIQDKAIANTTKKLTDLNLIDRVTLIKDGHQNMDKYIDCPVKAVMF 99 (197)
T ss_dssp CCTTCEEEESCCTTSHHHHHHHHHHCTTCEEEEECSCHHHHHHHHHHHHHTTCGGGEEEECSCGGGGGGTCCSCEEEEEE
T ss_pred CCCCCEEEEcCCCCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCCeEEEECCHHHHhhhccCCceEEEE
Confidence 45567999999 32 7779999998 566665542 46899999997642 2 22 577733
Q ss_pred cccchhhhHHhhhhhhhhcCCCccchhhhhhcccccceeeeeeccCChHHHHHHHHHHHHHhccCCcc---------C--
Q 036440 80 RLGYSHIKIMIAFFIRLVVGRGRLHIFSWLNFMKRVINMQIIIHVFGDEESVKILKICREAITSKAKL---------S-- 148 (181)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~iLHdw~D~~~~~iL~~~~~a~~~~g~e---------R-- 148 (181)
+..| .+.+ -..+ ....+...++|+.+...++|+|+. .
T Consensus 100 ~~~~------------~~~~------------------~~~~--~~~~~~~~~~l~~~~~~Lk~gG~l~~~~~~~~~~~~ 147 (197)
T 3eey_A 100 NLGY------------LPSG------------------DHSI--STRPETTIQALSKAMELLVTGGIITVVIYYGGDTGF 147 (197)
T ss_dssp EESB------------CTTS------------------CTTC--BCCHHHHHHHHHHHHHHEEEEEEEEEEECCBTTTBS
T ss_pred cCCc------------ccCc------------------cccc--ccCcccHHHHHHHHHHhCcCCCEEEEEEccCCCCcH
Confidence 3221 0000 0001 122345567999999999999921 0
Q ss_pred -CHHHHHHHH---HhCCCeEEEEEEcC
Q 036440 149 -TEKELESLF---VEVHFHHYKITPLF 171 (181)
Q Consensus 149 -t~~E~~~Ll---~~aGf~~~~i~~~~ 171 (181)
..+.+.+++ ...+|.+.+.....
T Consensus 148 ~~~~~~~~~~~~l~~~~~~v~~~~~~~ 174 (197)
T 3eey_A 148 EEKEKVLEFLKGVDQKKFIVQRTDFIN 174 (197)
T ss_dssp HHHHHHHHHHTTSCTTTEEEEEEEETT
T ss_pred HHHHHHHHHHHhCCCCcEEEEEEEecc
Confidence 133444444 44678888776654
|
| >3opn_A Putative hemolysin; structural genomics, PSI-2, protein structure initiative, NE SGX research center for structural genomics, nysgxrc; 2.05A {Lactococcus lactis subsp} | Back alignment and structure |
|---|
Probab=96.04 E-value=0.0064 Score=49.66 Aligned_cols=22 Identities=14% Similarity=0.025 Sum_probs=19.1
Q ss_pred CCHHHHHHHHHhCCCeEEEEEE
Q 036440 148 STEKELESLFVEVHFHHYKITP 169 (181)
Q Consensus 148 Rt~~E~~~Ll~~aGf~~~~i~~ 169 (181)
.+.+++.++++++||++..+..
T Consensus 162 ~~~~~l~~~l~~aGf~v~~~~~ 183 (232)
T 3opn_A 162 MTIEKVLKTATQLGFSVKGLTF 183 (232)
T ss_dssp HHHHHHHHHHHHHTEEEEEEEE
T ss_pred HHHHHHHHHHHHCCCEEEEEEE
Confidence 3778999999999999988864
|
| >3mti_A RRNA methylase; SAM-dependent, PSI, MCSG, structural genomics, midwest cente structural genomics, protein structure initiative; 1.95A {Streptococcus thermophilus} PDB: 3lby_A* | Back alignment and structure |
|---|
Probab=96.01 E-value=0.029 Score=42.29 Aligned_cols=113 Identities=12% Similarity=0.121 Sum_probs=67.7
Q ss_pred hcCCCeEEEec-----------CCCCceEEEeec-hhhhhhhcc------CCCceEEecCCCC--CCC-C-cceEecccc
Q 036440 25 FERLGSLVDVG-----------AFPCVKCTEFDQ-PHVVANLLD------TNNLKYLADDFFQ--SIP-P-VCMIPLRLG 82 (181)
Q Consensus 25 ~~~~~~lvDvG-----------~~P~l~~~~~Dl-P~Vv~~a~~------~~ri~~~~gDff~--~~P-~-~d~~~~~~~ 82 (181)
...-.+|+|+| +. ..+.+.+|+ |..++.+.. -++++++.+|+-+ ..+ . .|++..+++
T Consensus 20 ~~~~~~vLDiGcG~G~~~~~la~~-~~~v~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~~~~~l~~~~~~~fD~v~~~~~ 98 (185)
T 3mti_A 20 LDDESIVVDATMGNGNDTAFLAGL-SKKVYAFDVQEQALGKTSQRLSDLGIENTELILDGHENLDHYVREPIRAAIFNLG 98 (185)
T ss_dssp CCTTCEEEESCCTTSHHHHHHHTT-SSEEEEEESCHHHHHHHHHHHHHHTCCCEEEEESCGGGGGGTCCSCEEEEEEEEC
T ss_pred CCCCCEEEEEcCCCCHHHHHHHHh-CCEEEEEECCHHHHHHHHHHHHHcCCCcEEEEeCcHHHHHhhccCCcCEEEEeCC
Confidence 45567999999 34 778999998 566665542 2789999876643 133 2 577722222
Q ss_pred chhhhHHhhhhhhhhcCCCccchhhhhhcccccceeeeeecc--CChHHHHHHHHHHHHHhccCCc---------c----
Q 036440 83 YSHIKIMIAFFIRLVVGRGRLHIFSWLNFMKRVINMQIIIHV--FGDEESVKILKICREAITSKAK---------L---- 147 (181)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~iLHd--w~D~~~~~iL~~~~~a~~~~g~---------e---- 147 (181)
| +..--|. ...+...+.|+.+...++|||+ .
T Consensus 99 ~----------------------------------~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~ 144 (185)
T 3mti_A 99 Y----------------------------------LPSADKSVITKPHTTLEAIEKILDRLEVGGRLAIMIYYGHDGGDM 144 (185)
T ss_dssp ---------------------------------------------CHHHHHHHHHHHHHHEEEEEEEEEEEC------CH
T ss_pred C----------------------------------CCCcchhcccChhhHHHHHHHHHHhcCCCcEEEEEEeCCCCCCHH
Confidence 1 0000000 1336667889999999999991 1
Q ss_pred --CCHHHHHHHHHhCCCeEEEEEEcCC
Q 036440 148 --STEKELESLFVEVHFHHYKITPLFG 172 (181)
Q Consensus 148 --Rt~~E~~~Ll~~aGf~~~~i~~~~~ 172 (181)
....+|...+...+|...+......
T Consensus 145 ~~~~~~~~~~~l~~~~~~~~~~~~~~~ 171 (185)
T 3mti_A 145 EKDAVLEYVIGLDQRVFTAMLYQPLNQ 171 (185)
T ss_dssp HHHHHHHHHHHSCTTTEEEEEEEESSC
T ss_pred HHHHHHHHHHhCCCceEEEEEehhhcc
Confidence 1223344444556799888776643
|
| >1nv8_A HEMK protein; class I adoMet-dependent methyltransferase; HET: SAM MEQ; 2.20A {Thermotoga maritima} SCOP: c.66.1.30 PDB: 1nv9_A* 1vq1_A* 1sg9_A* | Back alignment and structure |
|---|
Probab=95.97 E-value=0.048 Score=45.56 Aligned_cols=121 Identities=14% Similarity=0.131 Sum_probs=74.8
Q ss_pred CCCeEEEec-----------CCCCceEEEeec-hhhhhhhc-------cCCCceEEecCCCCCCCC-c---ceEeccccc
Q 036440 27 RLGSLVDVG-----------AFPCVKCTEFDQ-PHVVANLL-------DTNNLKYLADDFFQSIPP-V---CMIPLRLGY 83 (181)
Q Consensus 27 ~~~~lvDvG-----------~~P~l~~~~~Dl-P~Vv~~a~-------~~~ri~~~~gDff~~~P~-~---d~~~~~~~~ 83 (181)
.-.+++|+| +.|+.+.+.+|+ |..++.+. ..+|++++.+|+++.++. . |++..+--|
T Consensus 123 ~~~~vLDlG~GsG~~~~~la~~~~~~v~~vDis~~al~~A~~n~~~~~l~~~v~~~~~D~~~~~~~~f~~~D~IvsnPPy 202 (284)
T 1nv8_A 123 GIKTVADIGTGSGAIGVSVAKFSDAIVFATDVSSKAVEIARKNAERHGVSDRFFVRKGEFLEPFKEKFASIEMILSNPPY 202 (284)
T ss_dssp TCCEEEEESCTTSHHHHHHHHHSSCEEEEEESCHHHHHHHHHHHHHTTCTTSEEEEESSTTGGGGGGTTTCCEEEECCCC
T ss_pred CCCEEEEEeCchhHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCCceEEEECcchhhcccccCCCCEEEEcCCC
Confidence 456899999 228999999998 67766554 245799999999986543 5 887333222
Q ss_pred hhhhHHhhhhhhhhcCCCccchhhhhhcccccceeeeeecc-----CChHHHHHHHHHHH-HHhccCC------ccCCHH
Q 036440 84 SHIKIMIAFFIRLVVGRGRLHIFSWLNFMKRVINMQIIIHV-----FGDEESVKILKICR-EAITSKA------KLSTEK 151 (181)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~iLHd-----w~D~~~~~iL~~~~-~a~~~~g------~eRt~~ 151 (181)
....- -+...+.|. +..++...+++++. ..++||| .....+
T Consensus 203 i~~~~---------------------------~l~~~v~~ep~~al~~~~dgl~~~~~i~~~~l~pgG~l~~e~~~~q~~ 255 (284)
T 1nv8_A 203 VKSSA---------------------------HLPKDVLFEPPEALFGGEDGLDFYREFFGRYDTSGKIVLMEIGEDQVE 255 (284)
T ss_dssp BCGGG---------------------------SCTTSCCCSCHHHHBCTTTSCHHHHHHHHHCCCTTCEEEEECCTTCHH
T ss_pred CCccc---------------------------ccChhhccCcHHHhcCCCcHHHHHHHHHHhcCCCCCEEEEEECchHHH
Confidence 10000 011223321 12233347899999 9999999 344566
Q ss_pred HHHHHHHhCCCeEEEEEEcCCCCeEEE
Q 036440 152 ELESLFVEVHFHHYKITPLFGLPSLIE 178 (181)
Q Consensus 152 E~~~Ll~~aGf~~~~i~~~~~~~~viE 178 (181)
+..+++++. .......|..-++-
T Consensus 256 ~v~~~~~~~----~~~~D~~g~~R~~~ 278 (284)
T 1nv8_A 256 ELKKIVSDT----VFLKDSAGKYRFLL 278 (284)
T ss_dssp HHTTTSTTC----EEEECTTSSEEEEE
T ss_pred HHHHHHHhC----CeecccCCCceEEE
Confidence 777777766 22335556554443
|
| >3tr6_A O-methyltransferase; cellular processes; HET: SAH; 2.70A {Coxiella burnetii} SCOP: c.66.1.0 | Back alignment and structure |
|---|
Probab=95.97 E-value=0.023 Score=44.24 Aligned_cols=77 Identities=9% Similarity=0.035 Sum_probs=55.9
Q ss_pred hcCCCeEEEec------------CCC-CceEEEeec-hhhhhhhc-------cCCCceEEecCCCCCCC---------Cc
Q 036440 25 FERLGSLVDVG------------AFP-CVKCTEFDQ-PHVVANLL-------DTNNLKYLADDFFQSIP---------PV 74 (181)
Q Consensus 25 ~~~~~~lvDvG------------~~P-~l~~~~~Dl-P~Vv~~a~-------~~~ri~~~~gDff~~~P---------~~ 74 (181)
.....+|||+| ++| +.+.+.+|. |..++.+. ..++++++.+|..+.+| ..
T Consensus 62 ~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~f 141 (225)
T 3tr6_A 62 LMQAKKVIDIGTFTGYSAIAMGLALPKDGTLITCDVDEKSTALAKEYWEKAGLSDKIGLRLSPAKDTLAELIHAGQAWQY 141 (225)
T ss_dssp HHTCSEEEEECCTTSHHHHHHHTTCCTTCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHHHHTTTCTTCE
T ss_pred hhCCCEEEEeCCcchHHHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHHHCCCCCceEEEeCCHHHHHHHhhhccCCCCc
Confidence 44567999999 577 889999998 56555443 25789999999876432 23
Q ss_pred ceEeccccchhhhHHhhhhhhhhcCCCccchhhhhhcccccceeeeeeccCChHHHHHHHHHHHHHhccCC
Q 036440 75 CMIPLRLGYSHIKIMIAFFIRLVVGRGRLHIFSWLNFMKRVINMQIIIHVFGDEESVKILKICREAITSKA 145 (181)
Q Consensus 75 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~iLHdw~D~~~~~iL~~~~~a~~~~g 145 (181)
|++ + .+.+.+....+|+.+...++|||
T Consensus 142 D~v---------------------------------------~-----~~~~~~~~~~~l~~~~~~L~pgG 168 (225)
T 3tr6_A 142 DLI---------------------------------------Y-----IDADKANTDLYYEESLKLLREGG 168 (225)
T ss_dssp EEE---------------------------------------E-----ECSCGGGHHHHHHHHHHHEEEEE
T ss_pred cEE---------------------------------------E-----ECCCHHHHHHHHHHHHHhcCCCc
Confidence 554 2 33445566778999999999998
|
| >1i9g_A Hypothetical protein RV2118C; mtase, adoMet, crystal, structural genomics, protein structure initiative; HET: SAM; 1.98A {Mycobacterium tuberculosis} SCOP: c.66.1.13 | Back alignment and structure |
|---|
Probab=95.87 E-value=0.036 Score=44.62 Aligned_cols=107 Identities=9% Similarity=0.132 Sum_probs=71.8
Q ss_pred HHHHHHhhhhhcCCCeEEEec-------------CCCCceEEEeec-hhhhhhhcc---------CCCceEEecCCCCC-
Q 036440 15 SLALKYCKQIFERLGSLVDVG-------------AFPCVKCTEFDQ-PHVVANLLD---------TNNLKYLADDFFQS- 70 (181)
Q Consensus 15 ~~~l~~~~~d~~~~~~lvDvG-------------~~P~l~~~~~Dl-P~Vv~~a~~---------~~ri~~~~gDff~~- 70 (181)
..+++.. +...-.+|||+| ..|..+.+.+|. |..++.+.. .++++++.+|+.+.
T Consensus 89 ~~i~~~~--~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~g~~~~~v~~~~~d~~~~~ 166 (280)
T 1i9g_A 89 AQIVHEG--DIFPGARVLEAGAGSGALTLSLLRAVGPAGQVISYEQRADHAEHARRNVSGCYGQPPDNWRLVVSDLADSE 166 (280)
T ss_dssp HHHHHHT--TCCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHHHTSCCTTEEEECSCGGGCC
T ss_pred HHHHHHc--CCCCCCEEEEEcccccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHhcCCCCCcEEEEECchHhcC
Confidence 3455565 566677999999 247889999998 776665531 36899999999864
Q ss_pred CCC--cceEeccccchhhhHHhhhhhhhhcCCCccchhhhhhcccccceeeeeeccCChHHHHHHHHHHHHHhccCC---
Q 036440 71 IPP--VCMIPLRLGYSHIKIMIAFFIRLVVGRGRLHIFSWLNFMKRVINMQIIIHVFGDEESVKILKICREAITSKA--- 145 (181)
Q Consensus 71 ~P~--~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~iLHdw~D~~~~~iL~~~~~a~~~~g--- 145 (181)
++. .|++ ++ ++.+.| ++|+++...++|+|
T Consensus 167 ~~~~~~D~v---------------------------------------~~-~~~~~~------~~l~~~~~~L~pgG~l~ 200 (280)
T 1i9g_A 167 LPDGSVDRA---------------------------------------VL-DMLAPW------EVLDAVSRLLVAGGVLM 200 (280)
T ss_dssp CCTTCEEEE---------------------------------------EE-ESSCGG------GGHHHHHHHEEEEEEEE
T ss_pred CCCCceeEE---------------------------------------EE-CCcCHH------HHHHHHHHhCCCCCEEE
Confidence 333 5776 33 222222 68999999999999
Q ss_pred -ccCCHH---HHHHHHHh-CCCeEEEEEE
Q 036440 146 -KLSTEK---ELESLFVE-VHFHHYKITP 169 (181)
Q Consensus 146 -~eRt~~---E~~~Ll~~-aGf~~~~i~~ 169 (181)
-..+.+ +....+.+ .||...+++.
T Consensus 201 ~~~~~~~~~~~~~~~l~~~~~f~~~~~~~ 229 (280)
T 1i9g_A 201 VYVATVTQLSRIVEALRAKQCWTEPRAWE 229 (280)
T ss_dssp EEESSHHHHHHHHHHHHHHSSBCCCEEEC
T ss_pred EEeCCHHHHHHHHHHHHhcCCcCCcEEEE
Confidence 233333 34444555 8898776654
|
| >1wy7_A Hypothetical protein PH1948; seven-stranded beta sheet, methyltransferase fold, structura genomics, transferase; HET: SAH; 2.20A {Pyrococcus horikoshii} SCOP: c.66.1.32 | Back alignment and structure |
|---|
Probab=95.84 E-value=0.039 Score=42.31 Aligned_cols=101 Identities=14% Similarity=0.078 Sum_probs=68.7
Q ss_pred CCCeEEEec-----------CCCCceEEEeec-hhhhhhhcc----CC-CceEEecCCCCCCCC-cceEeccccchhhhH
Q 036440 27 RLGSLVDVG-----------AFPCVKCTEFDQ-PHVVANLLD----TN-NLKYLADDFFQSIPP-VCMIPLRLGYSHIKI 88 (181)
Q Consensus 27 ~~~~lvDvG-----------~~P~l~~~~~Dl-P~Vv~~a~~----~~-ri~~~~gDff~~~P~-~d~~~~~~~~~~~~~ 88 (181)
.-.+++|+| ..+..+.+.+|. |..++.+.. .+ +++++.+|+.+ +|. .|++
T Consensus 49 ~~~~vlD~g~G~G~~~~~l~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~d~~~-~~~~~D~v----------- 116 (207)
T 1wy7_A 49 EGKVVADLGAGTGVLSYGALLLGAKEVICVEVDKEAVDVLIENLGEFKGKFKVFIGDVSE-FNSRVDIV----------- 116 (207)
T ss_dssp TTCEEEEETCTTCHHHHHHHHTTCSEEEEEESCHHHHHHHHHHTGGGTTSEEEEESCGGG-CCCCCSEE-----------
T ss_pred CcCEEEEeeCCCCHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHHHcCCCEEEEECchHH-cCCCCCEE-----------
Confidence 446899999 333347899998 666665542 12 79999999987 453 6888
Q ss_pred HhhhhhhhhcCCCccchhhhhhcccccceeeeeeccCChHHHHHHHHHHHHHhccCC-------ccCCHHHHHHHHHhCC
Q 036440 89 MIAFFIRLVVGRGRLHIFSWLNFMKRVINMQIIIHVFGDEESVKILKICREAITSKA-------KLSTEKELESLFVEVH 161 (181)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~iLHdw~D~~~~~iL~~~~~a~~~~g-------~eRt~~E~~~Ll~~aG 161 (181)
++.-..|.+......++|+.+...+ ++ ...+.+...+++++.|
T Consensus 117 ----------------------------~~~~p~~~~~~~~~~~~l~~~~~~l--~~~~~~~~~~~~~~~~~~~~l~~~g 166 (207)
T 1wy7_A 117 ----------------------------IMNPPFGSQRKHADRPFLLKAFEIS--DVVYSIHLAKPEVRRFIEKFSWEHG 166 (207)
T ss_dssp ----------------------------EECCCCSSSSTTTTHHHHHHHHHHC--SEEEEEEECCHHHHHHHHHHHHHTT
T ss_pred ----------------------------EEcCCCccccCCchHHHHHHHHHhc--CcEEEEEeCCcCCHHHHHHHHHHCC
Confidence 5555556665555566777777666 33 3345667788899999
Q ss_pred CeEEEEEE
Q 036440 162 FHHYKITP 169 (181)
Q Consensus 162 f~~~~i~~ 169 (181)
|+...+.+
T Consensus 167 ~~~~~~~~ 174 (207)
T 1wy7_A 167 FVVTHRLT 174 (207)
T ss_dssp EEEEEEEE
T ss_pred CeEEEEEE
Confidence 98776653
|
| >2frn_A Hypothetical protein PH0793; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Pyrococcus horikoshii OT3} PDB: 3k6r_A 3a25_A* 3a26_A* | Back alignment and structure |
|---|
Probab=95.77 E-value=0.062 Score=44.37 Aligned_cols=96 Identities=11% Similarity=-0.018 Sum_probs=68.9
Q ss_pred hcCCCeEEEec------------CCCCceEEEeec-hhhhhhhc-------cCCCceEEecCCCCCCCC--cceEecccc
Q 036440 25 FERLGSLVDVG------------AFPCVKCTEFDQ-PHVVANLL-------DTNNLKYLADDFFQSIPP--VCMIPLRLG 82 (181)
Q Consensus 25 ~~~~~~lvDvG------------~~P~l~~~~~Dl-P~Vv~~a~-------~~~ri~~~~gDff~~~P~--~d~~~~~~~ 82 (181)
.+.-.+|+|+| ..+. +.+.+|+ |..++.+. ..++++++.+|.++..+. .|++
T Consensus 123 ~~~~~~VLDlgcG~G~~~~~la~~~~~-~V~~vD~s~~~~~~a~~n~~~n~~~~~v~~~~~D~~~~~~~~~fD~V----- 196 (278)
T 2frn_A 123 AKPDELVVDMFAGIGHLSLPIAVYGKA-KVIAIEKDPYTFKFLVENIHLNKVEDRMSAYNMDNRDFPGENIADRI----- 196 (278)
T ss_dssp CCTTCEEEETTCTTTTTHHHHHHHTCC-EEEEECCCHHHHHHHHHHHHHTTCTTTEEEECSCTTTCCCCSCEEEE-----
T ss_pred CCCCCEEEEecccCCHHHHHHHHhCCC-EEEEEECCHHHHHHHHHHHHHcCCCceEEEEECCHHHhcccCCccEE-----
Confidence 34467999999 3344 7889998 56665543 256799999999986543 5766
Q ss_pred chhhhHHhhhhhhhhcCCCccchhhhhhcccccceeeeeeccCChHHHHHHHHHHHHHhccCC-------------ccCC
Q 036440 83 YSHIKIMIAFFIRLVVGRGRLHIFSWLNFMKRVINMQIIIHVFGDEESVKILKICREAITSKA-------------KLST 149 (181)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~iLHdw~D~~~~~iL~~~~~a~~~~g-------------~eRt 149 (181)
++ +.+ ....++|+.+...++||| .+..
T Consensus 197 ----------------------------------i~-----~~p-~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~ 236 (278)
T 2frn_A 197 ----------------------------------LM-----GYV-VRTHEFIPKALSIAKDGAIIHYHNTVPEKLMPREP 236 (278)
T ss_dssp ----------------------------------EE-----CCC-SSGGGGHHHHHHHEEEEEEEEEEEEEEGGGTTTTT
T ss_pred ----------------------------------EE-----CCc-hhHHHHHHHHHHHCCCCeEEEEEEeeccccccccH
Confidence 33 212 222567888888999988 2577
Q ss_pred HHHHHHHHHhCCCeEEE
Q 036440 150 EKELESLFVEVHFHHYK 166 (181)
Q Consensus 150 ~~E~~~Ll~~aGf~~~~ 166 (181)
.+++.+.++++||....
T Consensus 237 ~~~i~~~~~~~G~~~~~ 253 (278)
T 2frn_A 237 FETFKRITKEYGYDVEK 253 (278)
T ss_dssp HHHHHHHHHHTTCEEEE
T ss_pred HHHHHHHHHHcCCeeEE
Confidence 89999999999998765
|
| >3lcv_B Sisomicin-gentamicin resistance methylase SGM; antibiotic resistance, methyltransferase, transferase; HET: SAM; 2.00A {Micromonospora zionensis} PDB: 3lcu_A* | Back alignment and structure |
|---|
Probab=95.74 E-value=0.016 Score=50.37 Aligned_cols=101 Identities=10% Similarity=-0.031 Sum_probs=77.7
Q ss_pred CCCeEEEec------------CCCCceEEEeechh-hhhhhc-----cCCCceEEecCCCCCCCC--cceEeccccchhh
Q 036440 27 RLGSLVDVG------------AFPCVKCTEFDQPH-VVANLL-----DTNNLKYLADDFFQSIPP--VCMIPLRLGYSHI 86 (181)
Q Consensus 27 ~~~~lvDvG------------~~P~l~~~~~DlP~-Vv~~a~-----~~~ri~~~~gDff~~~P~--~d~~~~~~~~~~~ 86 (181)
...+|+|+| .+|..+.+.+|.-. .++.++ ...+.++.-.|+....|. +|++
T Consensus 132 ~p~~VLDLGCG~GpLAl~~~~~~p~a~y~a~DId~~~le~a~~~l~~~g~~~~~~v~D~~~~~p~~~~Dva--------- 202 (281)
T 3lcv_B 132 RPNTLRDLACGLNPLAAPWMGLPAETVYIASDIDARLVGFVDEALTRLNVPHRTNVADLLEDRLDEPADVT--------- 202 (281)
T ss_dssp CCSEEEETTCTTGGGCCTTTTCCTTCEEEEEESBHHHHHHHHHHHHHTTCCEEEEECCTTTSCCCSCCSEE---------
T ss_pred CCceeeeeccCccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHHhcCCCceEEEeeecccCCCCCcchH---------
Confidence 357999999 67999999999954 444332 255688999999977665 7999
Q ss_pred hHHhhhhhhhhcCCCccchhhhhhcccccceeeeeeccCChHHHHHHHHHHHHHhccCC-----------------ccCC
Q 036440 87 KIMIAFFIRLVVGRGRLHIFSWLNFMKRVINMQIIIHVFGDEESVKILKICREAITSKA-----------------KLST 149 (181)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~iLHdw~D~~~~~iL~~~~~a~~~~g-----------------~eRt 149 (181)
++--++|...+++.-..+ ++..++.+++ -+.=
T Consensus 203 ------------------------------L~lkti~~Le~q~kg~g~-~ll~aL~~~~vvVSfp~ksl~Grs~gm~~~Y 251 (281)
T 3lcv_B 203 ------------------------------LLLKTLPCLETQQRGSGW-EVIDIVNSPNIVVTFPTKSLGQRSKGMFQNY 251 (281)
T ss_dssp ------------------------------EETTCHHHHHHHSTTHHH-HHHHHSSCSEEEEEEECC-------CHHHHH
T ss_pred ------------------------------HHHHHHHHhhhhhhHHHH-HHHHHhCCCCEEEeccchhhcCCCcchhhHH
Confidence 777888988888888888 8999999998 1222
Q ss_pred HHHHHHHHHhCCCeEEEE
Q 036440 150 EKELESLFVEVHFHHYKI 167 (181)
Q Consensus 150 ~~E~~~Ll~~aGf~~~~i 167 (181)
.++|++++.+.|+...++
T Consensus 252 ~~~~e~~~~~~g~~~~~~ 269 (281)
T 3lcv_B 252 SQSFESQARERSCRIQRL 269 (281)
T ss_dssp HHHHHHHHHHHTCCEEEE
T ss_pred HHHHHHHHHhcCCceeee
Confidence 457888888899965554
|
| >4df3_A Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; NADP rossmann superfamily, S-adenosyl-L-M (SAM) binding, nucleolus; HET: SAM; 1.73A {Aeropyrum pernix} | Back alignment and structure |
|---|
Probab=95.72 E-value=0.066 Score=44.49 Aligned_cols=105 Identities=14% Similarity=0.101 Sum_probs=69.3
Q ss_pred hcCCCeEEEec-------------CCCCceEEEeec-hhhhhhhc----cCCCceEEecCCCCC--CCC----cceEecc
Q 036440 25 FERLGSLVDVG-------------AFPCVKCTEFDQ-PHVVANLL----DTNNLKYLADDFFQS--IPP----VCMIPLR 80 (181)
Q Consensus 25 ~~~~~~lvDvG-------------~~P~l~~~~~Dl-P~Vv~~a~----~~~ri~~~~gDff~~--~P~----~d~~~~~ 80 (181)
++.-.+|+|+| --|.=+.+.+|. |..++.+. ..+++..+.+|.-++ .|. .|++
T Consensus 75 ikpG~~VldlG~G~G~~~~~la~~VG~~G~V~avD~s~~~~~~l~~~a~~~~ni~~V~~d~~~p~~~~~~~~~vDvV--- 151 (233)
T 4df3_A 75 VKEGDRILYLGIASGTTASHMSDIIGPRGRIYGVEFAPRVMRDLLTVVRDRRNIFPILGDARFPEKYRHLVEGVDGL--- 151 (233)
T ss_dssp CCTTCEEEEETCTTSHHHHHHHHHHCTTCEEEEEECCHHHHHHHHHHSTTCTTEEEEESCTTCGGGGTTTCCCEEEE---
T ss_pred CCCCCEEEEecCcCCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhHhhcCeeEEEEeccCccccccccceEEEE---
Confidence 44557999999 247778889997 55555443 356888888887642 221 3544
Q ss_pred ccchhhhHHhhhhhhhhcCCCccchhhhhhcccccceeeeeeccCChHHHHHHHHHHHHHhccCC------ccC------
Q 036440 81 LGYSHIKIMIAFFIRLVVGRGRLHIFSWLNFMKRVINMQIIIHVFGDEESVKILKICREAITSKA------KLS------ 148 (181)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~iLHdw~D~~~~~iL~~~~~a~~~~g------~eR------ 148 (181)
++. +-| . ++....+++++..++||| +.|
T Consensus 152 ------------------------------------f~d-~~~-~--~~~~~~l~~~~r~LKpGG~lvI~ik~r~~d~~~ 191 (233)
T 4df3_A 152 ------------------------------------YAD-VAQ-P--EQAAIVVRNARFFLRDGGYMLMAIKARSIDVTT 191 (233)
T ss_dssp ------------------------------------EEC-CCC-T--THHHHHHHHHHHHEEEEEEEEEEEECCHHHHHT
T ss_pred ------------------------------------EEe-ccC-C--hhHHHHHHHHHHhccCCCEEEEEEecccCCCCC
Confidence 322 111 1 234568999999999999 222
Q ss_pred ----CHHHHHHHHHhCCCeEEEEEEcCC
Q 036440 149 ----TEKELESLFVEVHFHHYKITPLFG 172 (181)
Q Consensus 149 ----t~~E~~~Ll~~aGf~~~~i~~~~~ 172 (181)
..++-.+.|+++||+..+...+..
T Consensus 192 p~~~~~~~ev~~L~~~GF~l~e~i~L~p 219 (233)
T 4df3_A 192 EPSEVYKREIKTLMDGGLEIKDVVHLDP 219 (233)
T ss_dssp CCCHHHHHHHHHHHHTTCCEEEEEECTT
T ss_pred ChHHHHHHHHHHHHHCCCEEEEEEccCC
Confidence 234556778999999998877655
|
| >2b25_A Hypothetical protein; structural genomics, methyl transferase, SAM, structural GEN consortium, SGC, transferase; HET: SAM; 2.50A {Homo sapiens} SCOP: c.66.1.13 | Back alignment and structure |
|---|
Probab=95.70 E-value=0.035 Score=46.67 Aligned_cols=135 Identities=11% Similarity=0.126 Sum_probs=59.2
Q ss_pred HHHHHHhhhhhcCCCeEEEec------------C-CCCceEEEeec-hhhhhhhcc-----------------CCCceEE
Q 036440 15 SLALKYCKQIFERLGSLVDVG------------A-FPCVKCTEFDQ-PHVVANLLD-----------------TNNLKYL 63 (181)
Q Consensus 15 ~~~l~~~~~d~~~~~~lvDvG------------~-~P~l~~~~~Dl-P~Vv~~a~~-----------------~~ri~~~ 63 (181)
..+++.. +...-.+|||+| . .|..+.+.+|. |..++.+.. .+++++.
T Consensus 95 ~~~l~~l--~~~~g~~VLDiG~G~G~~~~~la~~~g~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~ln~~~~~~~~v~~~ 172 (336)
T 2b25_A 95 NMILSMM--DINPGDTVLEAGSGSGGMSLFLSKAVGSQGRVISFEVRKDHHDLAKKNYKHWRDSWKLSHVEEWPDNVDFI 172 (336)
T ss_dssp HHHHHHH--TCCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESSHHHHHHHHHHHHHHHHHHTTTCSSCCCCCEEEE
T ss_pred HHHHHhc--CCCCCCEEEEeCCCcCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHHhhcccccccccccCCceEEE
Confidence 4455655 566667999999 3 47788999998 566554432 3689999
Q ss_pred ecCCCCC---CCC--cceEeccccchhhhHHhhhhhhhhcCCCccchhhhhhcccccceeeeeeccCChHHHHHHHHHHH
Q 036440 64 ADDFFQS---IPP--VCMIPLRLGYSHIKIMIAFFIRLVVGRGRLHIFSWLNFMKRVINMQIIIHVFGDEESVKILKICR 138 (181)
Q Consensus 64 ~gDff~~---~P~--~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~iLHdw~D~~~~~iL~~~~ 138 (181)
.+|+.+. +|. .|++.++..-....+.-+ .--+.+|+ .+ ++-..+.++..++++...
T Consensus 173 ~~d~~~~~~~~~~~~fD~V~~~~~~~~~~l~~~-~~~LkpgG---------------~l---v~~~~~~~~~~~~~~~l~ 233 (336)
T 2b25_A 173 HKDISGATEDIKSLTFDAVALDMLNPHVTLPVF-YPHLKHGG---------------VC---AVYVVNITQVIELLDGIR 233 (336)
T ss_dssp ESCTTCCC-------EEEEEECSSSTTTTHHHH-GGGEEEEE---------------EE---EEEESSHHHHHHHHHHHH
T ss_pred ECChHHcccccCCCCeeEEEECCCCHHHHHHHH-HHhcCCCc---------------EE---EEEeCCHHHHHHHHHHHH
Confidence 9999874 333 587744433211111110 11122332 12 233455666666666554
Q ss_pred HH---------hccCCc-------cCCHHHHHHHHHhCCCeEEEEEEc
Q 036440 139 EA---------ITSKAK-------LSTEKELESLFVEVHFHHYKITPL 170 (181)
Q Consensus 139 ~a---------~~~~g~-------eRt~~E~~~Ll~~aGf~~~~i~~~ 170 (181)
+. .....+ .+...+|...|+++||+++++...
T Consensus 234 ~~~~~~~~~~~~~~~~~~w~~~~~~~~~g~y~~~l~~aGF~~v~~~~~ 281 (336)
T 2b25_A 234 TCELALSCEKISEVIVRDWLVCLAKQKNGILAQKVESKINTDVQLDSQ 281 (336)
T ss_dssp HHTCCEEEEEEECCCCCCEEECC-------------------------
T ss_pred hcCCCcccceEEEecccceEEEeecccccchhhhhccccccccccccc
Confidence 42 111111 112238999999999999887644
|
| >1ixk_A Methyltransferase; open beta sheet; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.38 | Back alignment and structure |
|---|
Probab=95.69 E-value=0.023 Score=48.07 Aligned_cols=118 Identities=8% Similarity=-0.037 Sum_probs=72.9
Q ss_pred hhcCCCeEEEec------------CC-CCceEEEeec-hhhhhhhcc------CCCceEEecCCCCC--CC-CcceEecc
Q 036440 24 IFERLGSLVDVG------------AF-PCVKCTEFDQ-PHVVANLLD------TNNLKYLADDFFQS--IP-PVCMIPLR 80 (181)
Q Consensus 24 d~~~~~~lvDvG------------~~-P~l~~~~~Dl-P~Vv~~a~~------~~ri~~~~gDff~~--~P-~~d~~~~~ 80 (181)
+...-.+|+|+| .+ +..+.+.+|. |..++.+.. ..+++++.+|+.+. .+ ..|.++++
T Consensus 115 ~~~~g~~VLDlg~G~G~~t~~la~~~~~~~~v~avD~s~~~l~~a~~~~~~~g~~~v~~~~~D~~~~~~~~~~fD~Il~d 194 (315)
T 1ixk_A 115 DPKPGEIVADMAAAPGGKTSYLAQLMRNDGVIYAFDVDENRLRETRLNLSRLGVLNVILFHSSSLHIGELNVEFDKILLD 194 (315)
T ss_dssp CCCTTCEEEECCSSCSHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHHTCCSEEEESSCGGGGGGGCCCEEEEEEE
T ss_pred CCCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHHHhCCCeEEEEECChhhcccccccCCEEEEe
Confidence 455667999999 23 4578899998 455554431 24799999998753 22 26888555
Q ss_pred ccchhhhHHhhhhhhhhcCCCccchhhhhhcccccceeeeeeccCChHHH-------HHHHHHHHHHhccCC--------
Q 036440 81 LGYSHIKIMIAFFIRLVVGRGRLHIFSWLNFMKRVINMQIIIHVFGDEES-------VKILKICREAITSKA-------- 145 (181)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~iLHdw~D~~~-------~~iL~~~~~a~~~~g-------- 145 (181)
.-+|+.-. .+ --..+.+.|+.++. .++|+++...++|||
T Consensus 195 ~Pcsg~g~--------------~~------------~~p~~~~~~~~~~~~~~~~~q~~~L~~~~~~LkpGG~lv~stcs 248 (315)
T 1ixk_A 195 APCTGSGT--------------IH------------KNPERKWNRTMDDIKFCQGLQMRLLEKGLEVLKPGGILVYSTCS 248 (315)
T ss_dssp CCTTSTTT--------------CC--------------------CCHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEESC
T ss_pred CCCCCccc--------------cc------------CChhHhhcCCHHHHHHHHHHHHHHHHHHHHhCCCCCEEEEEeCC
Confidence 43221100 00 00112234555443 589999999999999
Q ss_pred --ccCCHHHHHHHHHhCCCeEEEE
Q 036440 146 --KLSTEKELESLFVEVHFHHYKI 167 (181)
Q Consensus 146 --~eRt~~E~~~Ll~~aGf~~~~i 167 (181)
.+-.++..+.++++.||+.+.+
T Consensus 249 ~~~~Ene~~v~~~l~~~~~~~~~~ 272 (315)
T 1ixk_A 249 LEPEENEFVIQWALDNFDVELLPL 272 (315)
T ss_dssp CCGGGTHHHHHHHHHHSSEEEECC
T ss_pred CChHHhHHHHHHHHhcCCCEEecC
Confidence 4455667888999999877654
|
| >3dou_A Ribosomal RNA large subunit methyltransferase J; cell division, structural genomics, protein structure initiative, PSI; HET: SAM; 1.45A {Thermoplasma volcanium} SCOP: c.66.1.0 | Back alignment and structure |
|---|
Probab=95.65 E-value=0.045 Score=42.94 Aligned_cols=122 Identities=12% Similarity=0.209 Sum_probs=67.8
Q ss_pred HHHHhhhhhcCCCeEEEecCCCC----------ceEEEeechhhhhhhccCCCceEEecCCCCCC--------------C
Q 036440 17 ALKYCKQIFERLGSLVDVGAFPC----------VKCTEFDQPHVVANLLDTNNLKYLADDFFQSI--------------P 72 (181)
Q Consensus 17 ~l~~~~~d~~~~~~lvDvG~~P~----------l~~~~~DlP~Vv~~a~~~~ri~~~~gDff~~~--------------P 72 (181)
+.+.|. -+..-.+|||+|.-|+ .+.+.+|+-.. ...++++++.+|+.+.- .
T Consensus 16 i~~~~~-~~~~g~~VLDlG~G~G~~s~~la~~~~~V~gvD~~~~----~~~~~v~~~~~D~~~~~~~~~~~~~~~~~~~~ 90 (191)
T 3dou_A 16 LLDRYR-VVRKGDAVIEIGSSPGGWTQVLNSLARKIISIDLQEM----EEIAGVRFIRCDIFKETIFDDIDRALREEGIE 90 (191)
T ss_dssp HHHHHC-CSCTTCEEEEESCTTCHHHHHHTTTCSEEEEEESSCC----CCCTTCEEEECCTTSSSHHHHHHHHHHHHTCS
T ss_pred HHHHcC-CCCCCCEEEEEeecCCHHHHHHHHcCCcEEEEecccc----ccCCCeEEEEccccCHHHHHHHHHHhhcccCC
Confidence 344452 2456689999994444 56888888542 22468999999998631 1
Q ss_pred CcceEeccccchhhhHHhhhhhhhhcCCCccchhhhhhcccccceeeeeeccCChHHHHHHHHHHHHHhccCC-------
Q 036440 73 PVCMIPLRLGYSHIKIMIAFFIRLVVGRGRLHIFSWLNFMKRVINMQIIIHVFGDEESVKILKICREAITSKA------- 145 (181)
Q Consensus 73 ~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~iLHdw~D~~~~~iL~~~~~a~~~~g------- 145 (181)
..|+++.+... ...+.+. .-|...-+.+..+|+.+...++|||
T Consensus 91 ~~D~Vlsd~~~---------------~~~g~~~---------------~d~~~~~~l~~~~l~~a~~~LkpGG~lv~k~~ 140 (191)
T 3dou_A 91 KVDDVVSDAMA---------------KVSGIPS---------------RDHAVSYQIGQRVMEIAVRYLRNGGNVLLKQF 140 (191)
T ss_dssp SEEEEEECCCC---------------CCCSCHH---------------HHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred cceEEecCCCc---------------CCCCCcc---------------cCHHHHHHHHHHHHHHHHHHccCCCEEEEEEc
Confidence 34555222100 0000000 0000011234578999999999999
Q ss_pred ccCCHHHHHHHHHhCCCeEEEEE-EcCCCC
Q 036440 146 KLSTEKELESLFVEVHFHHYKIT-PLFGLP 174 (181)
Q Consensus 146 ~eRt~~E~~~Ll~~aGf~~~~i~-~~~~~~ 174 (181)
+.....++...++ ..|..+++. |..+-.
T Consensus 141 ~~~~~~~~~~~l~-~~F~~v~~~kP~asR~ 169 (191)
T 3dou_A 141 QGDMTNDFIAIWR-KNFSSYKISKPPASRG 169 (191)
T ss_dssp CSTHHHHHHHHHG-GGEEEEEEECC-----
T ss_pred CCCCHHHHHHHHH-HhcCEEEEECCCCccC
Confidence 3334566777774 469988875 655543
|
| >3u81_A Catechol O-methyltransferase; neurotransmitter degradation, transferase transferase inhibitor complex; HET: SAH; 1.13A {Rattus norvegicus} SCOP: c.66.1.1 PDB: 3nwe_A* 3oe5_A* 3ozr_A* 3oe4_A* 3ozt_A* 3ozs_A* 3r6t_A* 3hvi_A* 1jr4_A* 1vid_A* 1h1d_A* 2cl5_A* 3hvh_A* 3hvj_A* 3hvk_A* 3nw9_A* 3nwb_A* 3s68_A* 2zlb_A 2zth_A* ... | Back alignment and structure |
|---|
Probab=95.65 E-value=0.11 Score=40.59 Aligned_cols=99 Identities=9% Similarity=0.120 Sum_probs=64.3
Q ss_pred hcCCCeEEEec------------CC-CCceEEEeec-hhhhhhhc-------cCCCceEEecCCCCC---CC------Cc
Q 036440 25 FERLGSLVDVG------------AF-PCVKCTEFDQ-PHVVANLL-------DTNNLKYLADDFFQS---IP------PV 74 (181)
Q Consensus 25 ~~~~~~lvDvG------------~~-P~l~~~~~Dl-P~Vv~~a~-------~~~ri~~~~gDff~~---~P------~~ 74 (181)
.....+|||+| +. |+.+.+.+|+ |..++.+. ..++++++.+|+.+. ++ ..
T Consensus 56 ~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~~~f 135 (221)
T 3u81_A 56 EYSPSLVLELGAYCGYSAVRMARLLQPGARLLTMEINPDCAAITQQMLNFAGLQDKVTILNGASQDLIPQLKKKYDVDTL 135 (221)
T ss_dssp HHCCSEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHHGGGTTTTSCCCCC
T ss_pred hcCCCEEEEECCCCCHHHHHHHHhCCCCCEEEEEeCChHHHHHHHHHHHHcCCCCceEEEECCHHHHHHHHHHhcCCCce
Confidence 34568999999 34 4889999998 66666553 356899999998543 33 25
Q ss_pred ceEeccccchhhhHHhhhhhhhhcCCCccchhhhhhcccccceeeeeeccCChHHHHHHHHHHHHHhccCC-------cc
Q 036440 75 CMIPLRLGYSHIKIMIAFFIRLVVGRGRLHIFSWLNFMKRVINMQIIIHVFGDEESVKILKICREAITSKA-------KL 147 (181)
Q Consensus 75 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~iLHdw~D~~~~~iL~~~~~a~~~~g-------~e 147 (181)
|++ ++....|.+ ....++++.+ ..++||| ..
T Consensus 136 D~V---------------------------------------~~d~~~~~~--~~~~~~~~~~-~~LkpgG~lv~~~~~~ 173 (221)
T 3u81_A 136 DMV---------------------------------------FLDHWKDRY--LPDTLLLEKC-GLLRKGTVLLADNVIV 173 (221)
T ss_dssp SEE---------------------------------------EECSCGGGH--HHHHHHHHHT-TCCCTTCEEEESCCCC
T ss_pred EEE---------------------------------------EEcCCcccc--hHHHHHHHhc-cccCCCeEEEEeCCCC
Confidence 777 454444443 2233567777 8899999 33
Q ss_pred CCHHHHHHHHHhCC-CeEE
Q 036440 148 STEKELESLFVEVH-FHHY 165 (181)
Q Consensus 148 Rt~~E~~~Ll~~aG-f~~~ 165 (181)
....++.+.+.+.. |...
T Consensus 174 ~~~~~~~~~l~~~~~~~~~ 192 (221)
T 3u81_A 174 PGTPDFLAYVRGSSSFECT 192 (221)
T ss_dssp CCCHHHHHHHHHCTTEEEE
T ss_pred cchHHHHHHHhhCCCceEE
Confidence 34466666666654 4433
|
| >2hnk_A SAM-dependent O-methyltransferase; modified rossman fold; HET: SAH; 2.30A {Leptospira interrogans} | Back alignment and structure |
|---|
Probab=95.52 E-value=0.025 Score=44.92 Aligned_cols=46 Identities=13% Similarity=0.131 Sum_probs=34.5
Q ss_pred hcCCCeEEEec------------CCC-CceEEEeec-hhhhhhhcc-------CCCceEEecCCCCC
Q 036440 25 FERLGSLVDVG------------AFP-CVKCTEFDQ-PHVVANLLD-------TNNLKYLADDFFQS 70 (181)
Q Consensus 25 ~~~~~~lvDvG------------~~P-~l~~~~~Dl-P~Vv~~a~~-------~~ri~~~~gDff~~ 70 (181)
.....+|||+| .+| ..+.+.+|. |..++.+.. .+++++..+|..+.
T Consensus 58 ~~~~~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~ 124 (239)
T 2hnk_A 58 ISGAKRIIEIGTFTGYSSLCFASALPEDGKILCCDVSEEWTNVARKYWKENGLENKIFLKLGSALET 124 (239)
T ss_dssp HHTCSEEEEECCTTCHHHHHHHHHSCTTCEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHH
T ss_pred hhCcCEEEEEeCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCCEEEEECCHHHH
Confidence 45668999999 566 689999998 666665532 45799999998753
|
| >3iv6_A Putative Zn-dependent alcohol dehydrogenase; alpha/beta fold, rossmann-fold, structural genomics, PSI-2, structure initiative; HET: SAM; 2.70A {Rhodobacter sphaeroides} | Back alignment and structure |
|---|
Probab=95.50 E-value=0.028 Score=47.26 Aligned_cols=87 Identities=11% Similarity=0.103 Sum_probs=59.2
Q ss_pred HHHHHHhhhhhcCCCeEEEec----------CCCCceEEEeec-hhhhhhhcc--CCCceEEecCCCC-------CCC-C
Q 036440 15 SLALKYCKQIFERLGSLVDVG----------AFPCVKCTEFDQ-PHVVANLLD--TNNLKYLADDFFQ-------SIP-P 73 (181)
Q Consensus 15 ~~~l~~~~~d~~~~~~lvDvG----------~~P~l~~~~~Dl-P~Vv~~a~~--~~ri~~~~gDff~-------~~P-~ 73 (181)
..+++.. ....-.+|||+| +-.+.+.+.+|. |..++.+.. ... .+.+|+.+ ..+ .
T Consensus 35 ~~il~~l--~l~~g~~VLDlGcGtG~~a~~La~~g~~V~gvD~S~~ml~~Ar~~~~~~--~v~~~~~~~~~~~~~~~~~~ 110 (261)
T 3iv6_A 35 ENDIFLE--NIVPGSTVAVIGASTRFLIEKALERGASVTVFDFSQRMCDDLAEALADR--CVTIDLLDITAEIPKELAGH 110 (261)
T ss_dssp HHHHHTT--TCCTTCEEEEECTTCHHHHHHHHHTTCEEEEEESCHHHHHHHHHHTSSS--CCEEEECCTTSCCCGGGTTC
T ss_pred HHHHHhc--CCCCcCEEEEEeCcchHHHHHHHhcCCEEEEEECCHHHHHHHHHHHHhc--cceeeeeecccccccccCCC
Confidence 3445544 455567999999 223567899998 556665543 111 23333332 111 2
Q ss_pred cceEeccccchhhhHHhhhhhhhhcCCCccchhhhhhcccccceeeeeeccCChHHHHHHHHHHHHHhccCC
Q 036440 74 VCMIPLRLGYSHIKIMIAFFIRLVVGRGRLHIFSWLNFMKRVINMQIIIHVFGDEESVKILKICREAITSKA 145 (181)
Q Consensus 74 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~iLHdw~D~~~~~iL~~~~~a~~~~g 145 (181)
.|++ +...++|.|.+++..+.|++++..+ |||
T Consensus 111 fD~V---------------------------------------v~~~~l~~~~~~~~~~~l~~l~~lL-PGG 142 (261)
T 3iv6_A 111 FDFV---------------------------------------LNDRLINRFTTEEARRACLGMLSLV-GSG 142 (261)
T ss_dssp CSEE---------------------------------------EEESCGGGSCHHHHHHHHHHHHHHH-TTS
T ss_pred ccEE---------------------------------------EEhhhhHhCCHHHHHHHHHHHHHhC-cCc
Confidence 5777 8888999999999999999999999 999
|
| >2bm8_A Cephalosporin hydroxylase CMCI; cephamycin biosynthesis; 2.5A {Streptomyces clavuligerus} SCOP: c.66.1.50 PDB: 2bm9_A* 2br5_A* 2br4_A* 2br3_A* | Back alignment and structure |
|---|
Probab=95.50 E-value=0.09 Score=42.45 Aligned_cols=97 Identities=11% Similarity=0.062 Sum_probs=68.3
Q ss_pred cCCCeEEEec------------C----CCCceEEEeec-hhhhhhhc-cCCCceEEecCCCCC--CC-----CcceEecc
Q 036440 26 ERLGSLVDVG------------A----FPCVKCTEFDQ-PHVVANLL-DTNNLKYLADDFFQS--IP-----PVCMIPLR 80 (181)
Q Consensus 26 ~~~~~lvDvG------------~----~P~l~~~~~Dl-P~Vv~~a~-~~~ri~~~~gDff~~--~P-----~~d~~~~~ 80 (181)
....+||||| . +|..+.+.+|+ |..++.+. ..++|+++.+|..+. +| ..|++
T Consensus 80 ~~~~~VLDiG~GtG~~t~~la~~~~~~~~~~~V~gvD~s~~~l~~a~~~~~~v~~~~gD~~~~~~l~~~~~~~fD~I--- 156 (236)
T 2bm8_A 80 LRPRTIVELGVYNGGSLAWFRDLTKIMGIDCQVIGIDRDLSRCQIPASDMENITLHQGDCSDLTTFEHLREMAHPLI--- 156 (236)
T ss_dssp HCCSEEEEECCTTSHHHHHHHHHHHHTTCCCEEEEEESCCTTCCCCGGGCTTEEEEECCSSCSGGGGGGSSSCSSEE---
T ss_pred cCCCEEEEEeCCCCHHHHHHHHhhhhcCCCCEEEEEeCChHHHHHHhccCCceEEEECcchhHHHHHhhccCCCCEE---
Confidence 3457999999 3 68899999998 55555553 357999999999873 23 14666
Q ss_pred ccchhhhHHhhhhhhhhcCCCccchhhhhhcccccceeeeeeccCChHHHHHHHHHHHH-HhccCCc-----------cC
Q 036440 81 LGYSHIKIMIAFFIRLVVGRGRLHIFSWLNFMKRVINMQIIIHVFGDEESVKILKICRE-AITSKAK-----------LS 148 (181)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~iLHdw~D~~~~~iL~~~~~-a~~~~g~-----------eR 148 (181)
++... |. ...++|+.+.. .++|||+ ..
T Consensus 157 ------------------------------------~~d~~-~~----~~~~~l~~~~r~~LkpGG~lv~~d~~~~~~~~ 195 (236)
T 2bm8_A 157 ------------------------------------FIDNA-HA----NTFNIMKWAVDHLLEEGDYFIIEDMIPYWYRY 195 (236)
T ss_dssp ------------------------------------EEESS-CS----SHHHHHHHHHHHTCCTTCEEEECSCHHHHHHH
T ss_pred ------------------------------------EECCc-hH----hHHHHHHHHHHhhCCCCCEEEEEeCccccccc
Confidence 33322 42 44668888886 9999992 23
Q ss_pred CHHHHHHHHHhC--CCeEEE
Q 036440 149 TEKELESLFVEV--HFHHYK 166 (181)
Q Consensus 149 t~~E~~~Ll~~a--Gf~~~~ 166 (181)
+.+++.+++++. +|+.+.
T Consensus 196 ~~~~~~~~l~~~~~~f~~~~ 215 (236)
T 2bm8_A 196 APQLFSEYLGAFRDVLSMDM 215 (236)
T ss_dssp CHHHHHHHHHTTTTTEEEET
T ss_pred CHHHHHHHHHhCcccEEEcc
Confidence 556888999988 687653
|
| >1rjd_A PPM1P, carboxy methyl transferase for protein phosphatase 2A catalytic subunit; SAM dependent methyltransferase; HET: SAM; 1.80A {Saccharomyces cerevisiae} SCOP: c.66.1.37 PDB: 1rje_A* 1rjf_A 1rjg_A* 2ob2_A* 2ob1_A | Back alignment and structure |
|---|
Probab=95.45 E-value=0.088 Score=45.64 Aligned_cols=44 Identities=23% Similarity=0.282 Sum_probs=35.6
Q ss_pred cCCCeEEEec------------CCCCceEEEeechhhhhhhc---------------------------cCCCceEEecC
Q 036440 26 ERLGSLVDVG------------AFPCVKCTEFDQPHVVANLL---------------------------DTNNLKYLADD 66 (181)
Q Consensus 26 ~~~~~lvDvG------------~~P~l~~~~~DlP~Vv~~a~---------------------------~~~ri~~~~gD 66 (181)
.....||.+| .+|.++...+|+|+|++.-. .+++..+++.|
T Consensus 96 ~~~~qVV~LGaGlDTr~~RL~~~~~~~~~~EvD~P~vi~~K~~~l~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~v~~D 175 (334)
T 1rjd_A 96 NEKVQVVNLGCGSDLRMLPLLQMFPHLAYVDIDYNESVELKNSILRESEILRISLGLSKEDTAKSPFLIDQGRYKLAACD 175 (334)
T ss_dssp CSSEEEEEETCTTCCTHHHHHHHCTTEEEEEEECHHHHHHHHHHHHHSHHHHHHHTCCSSCCCCTTEEEECSSEEEEECC
T ss_pred CCCcEEEEeCCCCccHHHHhcCcCCCCEEEECCCHHHHHHHHHHhhhccchhhhcccccccccccccccCCCceEEEecC
Confidence 3568999999 46899999999999987332 13789999999
Q ss_pred CCC
Q 036440 67 FFQ 69 (181)
Q Consensus 67 ff~ 69 (181)
+.+
T Consensus 176 L~d 178 (334)
T 1rjd_A 176 LND 178 (334)
T ss_dssp TTC
T ss_pred CCC
Confidence 986
|
| >3id6_C Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; C/D guide RNA, 2'-O-methylation, coiled-coil, methyltransfer binding, rRNA processing; HET: SAM; 2.60A {Sulfolobus solfataricus} SCOP: c.66.1.0 PDB: 3id5_B* 3pla_E* | Back alignment and structure |
|---|
Probab=95.44 E-value=0.15 Score=42.13 Aligned_cols=114 Identities=14% Similarity=0.009 Sum_probs=69.3
Q ss_pred HHHHHHhh-hhhcCCCeEEEecC-------------CCCceEEEeechh-h----hhhhccCCCceEEecCCCCCC----
Q 036440 15 SLALKYCK-QIFERLGSLVDVGA-------------FPCVKCTEFDQPH-V----VANLLDTNNLKYLADDFFQSI---- 71 (181)
Q Consensus 15 ~~~l~~~~-~d~~~~~~lvDvG~-------------~P~l~~~~~DlP~-V----v~~a~~~~ri~~~~gDff~~~---- 71 (181)
..+++..+ -.+..-.+|+|+|+ -|.-+.+.+|+-+ . ++.+....++.++.+|..+..
T Consensus 63 ~~ll~~l~~~~l~~g~~VLDlG~GtG~~t~~la~~v~~~G~V~avD~s~~~l~~l~~~a~~r~nv~~i~~Da~~~~~~~~ 142 (232)
T 3id6_C 63 GAILKGLKTNPIRKGTKVLYLGAASGTTISHVSDIIELNGKAYGVEFSPRVVRELLLVAQRRPNIFPLLADARFPQSYKS 142 (232)
T ss_dssp HHHHTTCSCCSCCTTCEEEEETCTTSHHHHHHHHHHTTTSEEEEEECCHHHHHHHHHHHHHCTTEEEEECCTTCGGGTTT
T ss_pred HHHHhhhhhcCCCCCCEEEEEeecCCHHHHHHHHHhCCCCEEEEEECcHHHHHHHHHHhhhcCCeEEEEcccccchhhhc
Confidence 44555441 02455579999992 3556788999843 3 233434578999999986531
Q ss_pred -C-CcceEeccccchhhhHHhhhhhhhhcCCCccchhhhhhcccccceeeeeeccCChHHHHH-HHHHHHHHhccCC---
Q 036440 72 -P-PVCMIPLRLGYSHIKIMIAFFIRLVVGRGRLHIFSWLNFMKRVINMQIIIHVFGDEESVK-ILKICREAITSKA--- 145 (181)
Q Consensus 72 -P-~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~iLHdw~D~~~~~-iL~~~~~a~~~~g--- 145 (181)
+ ..|++ +. |.....-.+ ++++++..++|||
T Consensus 143 ~~~~~D~I---------------------------------------~~-----d~a~~~~~~il~~~~~~~LkpGG~lv 178 (232)
T 3id6_C 143 VVENVDVL---------------------------------------YV-----DIAQPDQTDIAIYNAKFFLKVNGDML 178 (232)
T ss_dssp TCCCEEEE---------------------------------------EE-----CCCCTTHHHHHHHHHHHHEEEEEEEE
T ss_pred cccceEEE---------------------------------------Ee-----cCCChhHHHHHHHHHHHhCCCCeEEE
Confidence 1 24665 22 222222333 4456666999999
Q ss_pred ---c----------cCCHHHHHHHHHhCCCeEEEEEEcCC
Q 036440 146 ---K----------LSTEKELESLFVEVHFHHYKITPLFG 172 (181)
Q Consensus 146 ---~----------eRt~~E~~~Ll~~aGf~~~~i~~~~~ 172 (181)
+ +-.+++....|+++||+..+...+..
T Consensus 179 isik~~~~d~t~~~~e~~~~~~~~L~~~gf~~~~~~~l~p 218 (232)
T 3id6_C 179 LVIKARSIDVTKDPKEIYKTEVEKLENSNFETIQIINLDP 218 (232)
T ss_dssp EEEC-------CCSSSSTTHHHHHHHHTTEEEEEEEECTT
T ss_pred EEEccCCcccCCCHHHHHHHHHHHHHHCCCEEEEEeccCC
Confidence 1 11235566778899999999887643
|
| >3gdh_A Trimethylguanosine synthase homolog; M7G, CAP, dimethyltransferase, usnRNA, snoRNA, telomerase, cytoplasm, methyltransferase, nucleus; HET: MGP SAH; 2.00A {Homo sapiens} PDB: 3egi_A* | Back alignment and structure |
|---|
Probab=95.44 E-value=0.0045 Score=48.92 Aligned_cols=54 Identities=17% Similarity=0.272 Sum_probs=37.9
Q ss_pred CCCeEEEec----------CCCCceEEEeec-hhhhhhhcc-------CCCceEEecCCCCCCCC--cceEecc
Q 036440 27 RLGSLVDVG----------AFPCVKCTEFDQ-PHVVANLLD-------TNNLKYLADDFFQSIPP--VCMIPLR 80 (181)
Q Consensus 27 ~~~~lvDvG----------~~P~l~~~~~Dl-P~Vv~~a~~-------~~ri~~~~gDff~~~P~--~d~~~~~ 80 (181)
.-.+|||+| +-.+.+.+.+|+ |..++.+.. .++++++.+|+.+..|. .|++..+
T Consensus 78 ~~~~vLD~gcG~G~~~~~la~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~D~v~~~ 151 (241)
T 3gdh_A 78 KCDVVVDAFCGVGGNTIQFALTGMRVIAIDIDPVKIALARNNAEVYGIADKIEFICGDFLLLASFLKADVVFLS 151 (241)
T ss_dssp CCSEEEETTCTTSHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHGGGCCCSEEEEC
T ss_pred CCCEEEECccccCHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHHcCCCcCeEEEECChHHhcccCCCCEEEEC
Confidence 567999999 223478899998 566665542 26899999999864333 6888333
|
| >1nt2_A Fibrillarin-like PRE-rRNA processing protein; adeMet, binding motif, RNA binding protein; HET: SAM; 2.90A {Archaeoglobus fulgidus} SCOP: c.66.1.3 | Back alignment and structure |
|---|
Probab=95.41 E-value=0.19 Score=39.74 Aligned_cols=102 Identities=14% Similarity=0.031 Sum_probs=65.8
Q ss_pred cCCCeEEEec------------CCCCceEEEeechh-h----hhhhccCCCceEEecCCCCC---C--CC-cceEecccc
Q 036440 26 ERLGSLVDVG------------AFPCVKCTEFDQPH-V----VANLLDTNNLKYLADDFFQS---I--PP-VCMIPLRLG 82 (181)
Q Consensus 26 ~~~~~lvDvG------------~~P~l~~~~~DlP~-V----v~~a~~~~ri~~~~gDff~~---~--P~-~d~~~~~~~ 82 (181)
..-.+|||+| ..|.-+.+.+|+-. . .+.+...+++.++.+|..+. . +. .|++
T Consensus 56 ~~g~~VLDlGcGtG~~~~~la~~~~~~~V~gvD~s~~~l~~~~~~a~~~~~v~~~~~d~~~~~~~~~~~~~fD~V----- 130 (210)
T 1nt2_A 56 RGDERVLYLGAASGTTVSHLADIVDEGIIYAVEYSAKPFEKLLELVRERNNIIPLLFDASKPWKYSGIVEKVDLI----- 130 (210)
T ss_dssp CSSCEEEEETCTTSHHHHHHHHHTTTSEEEEECCCHHHHHHHHHHHHHCSSEEEECSCTTCGGGTTTTCCCEEEE-----
T ss_pred CCCCEEEEECCcCCHHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHhcCCCeEEEEcCCCCchhhcccccceeEE-----
Confidence 3446899999 44556889999853 2 33444456788888888753 2 22 4666
Q ss_pred chhhhHHhhhhhhhhcCCCccchhhhhhcccccceeeeeeccCChHHHHHHHHHHHHHhccCC------------ccCCH
Q 036440 83 YSHIKIMIAFFIRLVVGRGRLHIFSWLNFMKRVINMQIIIHVFGDEESVKILKICREAITSKA------------KLSTE 150 (181)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~iLHdw~D~~~~~iL~~~~~a~~~~g------------~eRt~ 150 (181)
+.. +.+ .++...+|++++..++||| -..+.
T Consensus 131 ----------------------------------~~~-~~~---~~~~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~ 172 (210)
T 1nt2_A 131 ----------------------------------YQD-IAQ---KNQIEILKANAEFFLKEKGEVVIMVKARSIDSTAEP 172 (210)
T ss_dssp ----------------------------------EEC-CCS---TTHHHHHHHHHHHHEEEEEEEEEEEEHHHHCTTSCH
T ss_pred ----------------------------------EEe-ccC---hhHHHHHHHHHHHHhCCCCEEEEEEecCCccccCCH
Confidence 322 222 2334456999999999999 12234
Q ss_pred HHHH--HH--HHhCCCeEEEEEEcC
Q 036440 151 KELE--SL--FVEVHFHHYKITPLF 171 (181)
Q Consensus 151 ~E~~--~L--l~~aGf~~~~i~~~~ 171 (181)
++.. ++ ++++ |++.+.....
T Consensus 173 ~~~~~~~~~~l~~~-f~~~~~~~~~ 196 (210)
T 1nt2_A 173 EEVFKSVLKEMEGD-FKIVKHGSLM 196 (210)
T ss_dssp HHHHHHHHHHHHTT-SEEEEEEECT
T ss_pred HHHHHHHHHHHHhh-cEEeeeecCC
Confidence 5542 33 8888 9999887663
|
| >3r3h_A O-methyltransferase, SAM-dependent; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.65A {Legionella pneumophila subsp} | Back alignment and structure |
|---|
Probab=95.37 E-value=0.024 Score=46.04 Aligned_cols=47 Identities=13% Similarity=0.217 Sum_probs=34.9
Q ss_pred hcCCCeEEEec------------CCC-CceEEEeec-hhhhhhhc-------cCCCceEEecCCCCCC
Q 036440 25 FERLGSLVDVG------------AFP-CVKCTEFDQ-PHVVANLL-------DTNNLKYLADDFFQSI 71 (181)
Q Consensus 25 ~~~~~~lvDvG------------~~P-~l~~~~~Dl-P~Vv~~a~-------~~~ri~~~~gDff~~~ 71 (181)
..+..+|||+| +.| +.+.+.+|. |..++.+. ..++|+++.+|..+.+
T Consensus 58 ~~~~~~VLDiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~gda~~~l 125 (242)
T 3r3h_A 58 LTRAKKVLELGTFTGYSALAMSLALPDDGQVITCDINEGWTKHAHPYWREAKQEHKIKLRLGPALDTL 125 (242)
T ss_dssp HHTCSEEEEEESCCSHHHHHHHHTSCTTCEEEEEECCCSSCCCSHHHHHHTTCTTTEEEEESCHHHHH
T ss_pred hcCcCEEEEeeCCcCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHH
Confidence 45678999999 565 789999998 45544332 3579999999987643
|
| >3uwp_A Histone-lysine N-methyltransferase, H3 lysine-79; epigenetics, tubercidin, structu genomics, structural genomics consortium, SGC; HET: 5ID; 2.05A {Homo sapiens} PDB: 4eqz_A* 3sx0_A* 4er0_A* 4er7_A* 1nw3_A* 4er6_A* 4er5_A* 3qow_A* 3qox_A* 4ek9_A* 4ekg_A* 4eki_A* 4er3_A* 3sr4_A* | Back alignment and structure |
|---|
Probab=95.33 E-value=0.034 Score=50.85 Aligned_cols=87 Identities=14% Similarity=0.108 Sum_probs=60.9
Q ss_pred HHHHHHhhhhhcCCCeEEEec------------CCCCceEEEeech-hhhhhhc--------------c-CCCceEEecC
Q 036440 15 SLALKYCKQIFERLGSLVDVG------------AFPCVKCTEFDQP-HVVANLL--------------D-TNNLKYLADD 66 (181)
Q Consensus 15 ~~~l~~~~~d~~~~~~lvDvG------------~~P~l~~~~~DlP-~Vv~~a~--------------~-~~ri~~~~gD 66 (181)
..+++.. +...-.+++|+| .++.-+++.+|+- ..++.+. . .++|+++.||
T Consensus 163 ~~il~~l--~l~~gd~VLDLGCGtG~l~l~lA~~~g~~kVvGIDiS~~~lelAr~n~e~frkr~~~~Gl~~~rVefi~GD 240 (438)
T 3uwp_A 163 AQMIDEI--KMTDDDLFVDLGSGVGQVVLQVAAATNCKHHYGVEKADIPAKYAETMDREFRKWMKWYGKKHAEYTLERGD 240 (438)
T ss_dssp HHHHHHH--CCCTTCEEEEESCTTSHHHHHHHHHCCCSEEEEEECCHHHHHHHHHHHHHHHHHHHHHTBCCCEEEEEECC
T ss_pred HHHHHhc--CCCCCCEEEEeCCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHHHHHHHHhCCCCCCeEEEECc
Confidence 4455555 566678999999 4676679999984 4443332 1 3799999999
Q ss_pred CCCC-C----CCcceEeccccchhhhHHhhhhhhhhcCCCccchhhhhhcccccceeeeeeccCChHHHHHHHHHHHHHh
Q 036440 67 FFQS-I----PPVCMIPLRLGYSHIKIMIAFFIRLVVGRGRLHIFSWLNFMKRVINMQIIIHVFGDEESVKILKICREAI 141 (181)
Q Consensus 67 ff~~-~----P~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~iLHdw~D~~~~~iL~~~~~a~ 141 (181)
+++. + +.+|++ ++...+| . .+-.+.|+.+...|
T Consensus 241 ~~~lp~~d~~~~aDVV---------------------------------------f~Nn~~F--~-pdl~~aL~Ei~RvL 278 (438)
T 3uwp_A 241 FLSEEWRERIANTSVI---------------------------------------FVNNFAF--G-PEVDHQLKERFANM 278 (438)
T ss_dssp TTSHHHHHHHHTCSEE---------------------------------------EECCTTC--C-HHHHHHHHHHHTTS
T ss_pred ccCCccccccCCccEE---------------------------------------EEccccc--C-chHHHHHHHHHHcC
Confidence 9973 2 246777 6655554 2 45566678889999
Q ss_pred ccCC
Q 036440 142 TSKA 145 (181)
Q Consensus 142 ~~~g 145 (181)
+|||
T Consensus 279 KPGG 282 (438)
T 3uwp_A 279 KEGG 282 (438)
T ss_dssp CTTC
T ss_pred CCCc
Confidence 9999
|
| >3c3p_A Methyltransferase; NP_951602.1, structural genomics, joint for structural genomics, JCSG, protein structure initiative transferase; 1.90A {Geobacter sulfurreducens pca} | Back alignment and structure |
|---|
Probab=95.25 E-value=0.018 Score=44.72 Aligned_cols=48 Identities=13% Similarity=0.086 Sum_probs=36.0
Q ss_pred hcCCCeEEEec------------CCC-CceEEEeec-hhhhhhhc-------cCCCceEEecCCCCCCC
Q 036440 25 FERLGSLVDVG------------AFP-CVKCTEFDQ-PHVVANLL-------DTNNLKYLADDFFQSIP 72 (181)
Q Consensus 25 ~~~~~~lvDvG------------~~P-~l~~~~~Dl-P~Vv~~a~-------~~~ri~~~~gDff~~~P 72 (181)
.....++||+| ++| +.+.+.+|. |..++.+. ..++++++.+|..+.+|
T Consensus 54 ~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~ 122 (210)
T 3c3p_A 54 IKQPQLVVVPGDGLGCASWWFARAISISSRVVMIDPDRDNVEHARRMLHDNGLIDRVELQVGDPLGIAA 122 (210)
T ss_dssp HHCCSEEEEESCGGGHHHHHHHTTSCTTCEEEEEESCHHHHHHHHHHHHHHSGGGGEEEEESCHHHHHT
T ss_pred hhCCCEEEEEcCCccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHCCCCceEEEEEecHHHHhc
Confidence 34567999999 567 789999998 66665543 25689999999976433
|
| >1iy9_A Spermidine synthase; rossmann fold, structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacillus subtilis} SCOP: c.66.1.17 | Back alignment and structure |
|---|
Probab=95.24 E-value=0.019 Score=47.74 Aligned_cols=102 Identities=17% Similarity=0.061 Sum_probs=66.3
Q ss_pred CCCeEEEec-----------CC-CCceEEEeec-hhhhhhhcc----------CCCceEEecCCCCCC---CC-cceEec
Q 036440 27 RLGSLVDVG-----------AF-PCVKCTEFDQ-PHVVANLLD----------TNNLKYLADDFFQSI---PP-VCMIPL 79 (181)
Q Consensus 27 ~~~~lvDvG-----------~~-P~l~~~~~Dl-P~Vv~~a~~----------~~ri~~~~gDff~~~---P~-~d~~~~ 79 (181)
..++|+|+| ++ |..+.+.+|+ |.+++.++. .+|++++.+|.++.+ +. .|++
T Consensus 75 ~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vEid~~~v~~ar~~~~~~~~~~~~~rv~v~~~D~~~~l~~~~~~fD~I-- 152 (275)
T 1iy9_A 75 NPEHVLVVGGGDGGVIREILKHPSVKKATLVDIDGKVIEYSKKFLPSIAGKLDDPRVDVQVDDGFMHIAKSENQYDVI-- 152 (275)
T ss_dssp SCCEEEEESCTTCHHHHHHTTCTTCSEEEEEESCHHHHHHHHHHCHHHHTTTTSTTEEEEESCSHHHHHTCCSCEEEE--
T ss_pred CCCEEEEECCchHHHHHHHHhCCCCceEEEEECCHHHHHHHHHHhHhhccccCCCceEEEECcHHHHHhhCCCCeeEE--
Confidence 457999999 55 5689999998 777775531 479999999987643 22 5777
Q ss_pred cccchhhhHHhhhhhhhhcCCCccchhhhhhcccccceeeeeeccCChH--HHHHHHHHHHHHhccCC--------ccCC
Q 036440 80 RLGYSHIKIMIAFFIRLVVGRGRLHIFSWLNFMKRVINMQIIIHVFGDE--ESVKILKICREAITSKA--------KLST 149 (181)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~iLHdw~D~--~~~~iL~~~~~a~~~~g--------~eRt 149 (181)
++...-|....+ ...++++.++..++|+| ....
T Consensus 153 -------------------------------------i~d~~~~~~~~~~l~~~~~~~~~~~~L~pgG~lv~~~~~~~~~ 195 (275)
T 1iy9_A 153 -------------------------------------MVDSTEPVGPAVNLFTKGFYAGIAKALKEDGIFVAQTDNPWFT 195 (275)
T ss_dssp -------------------------------------EESCSSCCSCCCCCSTTHHHHHHHHHEEEEEEEEEECCCTTTC
T ss_pred -------------------------------------EECCCCCCCcchhhhHHHHHHHHHHhcCCCcEEEEEcCCcccc
Confidence 222111111111 12578999999999999 1122
Q ss_pred ---HHHHHHHHHhCCCeEEEEE
Q 036440 150 ---EKELESLFVEVHFHHYKIT 168 (181)
Q Consensus 150 ---~~E~~~Ll~~aGf~~~~i~ 168 (181)
..+..+.++++ |..+.+.
T Consensus 196 ~~~~~~~~~~l~~~-F~~v~~~ 216 (275)
T 1iy9_A 196 PELITNVQRDVKEI-FPITKLY 216 (275)
T ss_dssp HHHHHHHHHHHHTT-CSEEEEE
T ss_pred HHHHHHHHHHHHHh-CCCeEEE
Confidence 34455566666 7777665
|
| >3dmg_A Probable ribosomal RNA small subunit methyltransf; monomethyltranserase, 16S rRNA methyltransferase, N2 G1207 methyltransferase; HET: SAH; 1.55A {Thermus thermophilus} PDB: 3dmf_A* 3dmh_A* 2zul_A* 2zwv_A* | Back alignment and structure |
|---|
Probab=95.19 E-value=0.015 Score=51.08 Aligned_cols=92 Identities=14% Similarity=0.122 Sum_probs=63.3
Q ss_pred HHHHHHhhhhhc----CCCeEEEec----------CCCCceEEEeec-hhhhhhhcc-----CCCceEEecCCCCCCC--
Q 036440 15 SLALKYCKQIFE----RLGSLVDVG----------AFPCVKCTEFDQ-PHVVANLLD-----TNNLKYLADDFFQSIP-- 72 (181)
Q Consensus 15 ~~~l~~~~~d~~----~~~~lvDvG----------~~P~l~~~~~Dl-P~Vv~~a~~-----~~ri~~~~gDff~~~P-- 72 (181)
..+++...+... .-.+|+|+| +--+.+.+.+|. |..++.+.. .-+++++.+|+++..+
T Consensus 217 ~~ll~~l~~~l~~~~~~~~~VLDlGcG~G~~~~~la~~g~~V~gvDis~~al~~A~~n~~~~~~~v~~~~~D~~~~~~~~ 296 (381)
T 3dmg_A 217 LLLLEALQERLGPEGVRGRQVLDLGAGYGALTLPLARMGAEVVGVEDDLASVLSLQKGLEANALKAQALHSDVDEALTEE 296 (381)
T ss_dssp HHHHHHHHHHHCTTTTTTCEEEEETCTTSTTHHHHHHTTCEEEEEESBHHHHHHHHHHHHHTTCCCEEEECSTTTTSCTT
T ss_pred HHHHHHHHHhhcccCCCCCEEEEEeeeCCHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHHcCCCeEEEEcchhhccccC
Confidence 445555532221 346899999 112568899998 566665542 2358999999997643
Q ss_pred -CcceEeccccchhhhHHhhhhhhhhcCCCccchhhhhhcccccceeeeeecc---CChHHHHHHHHHHHHHhccCC
Q 036440 73 -PVCMIPLRLGYSHIKIMIAFFIRLVVGRGRLHIFSWLNFMKRVINMQIIIHV---FGDEESVKILKICREAITSKA 145 (181)
Q Consensus 73 -~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~iLHd---w~D~~~~~iL~~~~~a~~~~g 145 (181)
..|++ ++.-.+|. ...+...++++.+...++|||
T Consensus 297 ~~fD~I---------------------------------------i~npp~~~~~~~~~~~~~~~l~~~~~~LkpGG 334 (381)
T 3dmg_A 297 ARFDII---------------------------------------VTNPPFHVGGAVILDVAQAFVNVAAARLRPGG 334 (381)
T ss_dssp CCEEEE---------------------------------------EECCCCCTTCSSCCHHHHHHHHHHHHHEEEEE
T ss_pred CCeEEE---------------------------------------EECCchhhcccccHHHHHHHHHHHHHhcCcCc
Confidence 26888 56656665 346777899999999999999
|
| >2yvl_A TRMI protein, hypothetical protein; tRNA, methyltransferase, S-adenosylmethionine, structural GE NPPSFA; HET: SAM; 2.20A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=95.17 E-value=0.042 Score=43.14 Aligned_cols=104 Identities=13% Similarity=0.142 Sum_probs=68.6
Q ss_pred HHHHHhhhhhcCCCeEEEec-----------CCCCceEEEeec-hhhhhhhcc-------CCCceEEecCCCCCC-CC--
Q 036440 16 LALKYCKQIFERLGSLVDVG-----------AFPCVKCTEFDQ-PHVVANLLD-------TNNLKYLADDFFQSI-PP-- 73 (181)
Q Consensus 16 ~~l~~~~~d~~~~~~lvDvG-----------~~P~l~~~~~Dl-P~Vv~~a~~-------~~ri~~~~gDff~~~-P~-- 73 (181)
.+++.. +...-.+|+|+| +. ..+.+.+|. |..++.+.. .+++++..+|+.+.. +.
T Consensus 82 ~~~~~~--~~~~~~~vldiG~G~G~~~~~l~~~-~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~ 158 (248)
T 2yvl_A 82 YIALKL--NLNKEKRVLEFGTGSGALLAVLSEV-AGEVWTFEAVEEFYKTAQKNLKKFNLGKNVKFFNVDFKDAEVPEGI 158 (248)
T ss_dssp HHHHHT--TCCTTCEEEEECCTTSHHHHHHHHH-SSEEEEECSCHHHHHHHHHHHHHTTCCTTEEEECSCTTTSCCCTTC
T ss_pred HHHHhc--CCCCCCEEEEeCCCccHHHHHHHHh-CCEEEEEecCHHHHHHHHHHHHHcCCCCcEEEEEcChhhcccCCCc
Confidence 344444 455667999999 23 668999997 556555432 378999999999865 43
Q ss_pred cceEeccccchhhhHHhhhhhhhhcCCCccchhhhhhcccccceeeeeeccCChHHHHHHHHHHHHHhccCC----ccC-
Q 036440 74 VCMIPLRLGYSHIKIMIAFFIRLVVGRGRLHIFSWLNFMKRVINMQIIIHVFGDEESVKILKICREAITSKA----KLS- 148 (181)
Q Consensus 74 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~iLHdw~D~~~~~iL~~~~~a~~~~g----~eR- 148 (181)
.|++ ++ +.+ +..++|+.+...++|+| -..
T Consensus 159 ~D~v---------------------------------------~~-----~~~--~~~~~l~~~~~~L~~gG~l~~~~~~ 192 (248)
T 2yvl_A 159 FHAA---------------------------------------FV-----DVR--EPWHYLEKVHKSLMEGAPVGFLLPT 192 (248)
T ss_dssp BSEE---------------------------------------EE-----CSS--CGGGGHHHHHHHBCTTCEEEEEESS
T ss_pred ccEE---------------------------------------EE-----CCc--CHHHHHHHHHHHcCCCCEEEEEeCC
Confidence 5777 32 222 22357899999999999 223
Q ss_pred --CHHHHHHHHHhCCCeEEEEEE
Q 036440 149 --TEKELESLFVEVHFHHYKITP 169 (181)
Q Consensus 149 --t~~E~~~Ll~~aGf~~~~i~~ 169 (181)
..++..+++++. |..+++..
T Consensus 193 ~~~~~~~~~~l~~~-f~~~~~~~ 214 (248)
T 2yvl_A 193 ANQVIKLLESIENY-FGNLEVVE 214 (248)
T ss_dssp HHHHHHHHHHSTTT-EEEEEEEE
T ss_pred HHHHHHHHHHHHhh-CCcceEEE
Confidence 344555566666 87766653
|
| >3g89_A Ribosomal RNA small subunit methyltransferase G; 16S rRNA methyltransferase, translation, cytoplasm, rRNA processing; HET: HIC SAM AMP; 1.50A {Thermus thermophilus} PDB: 3g88_A* 3g8a_A* 3g8b_A* | Back alignment and structure |
|---|
Probab=95.11 E-value=0.018 Score=47.21 Aligned_cols=99 Identities=11% Similarity=-0.007 Sum_probs=67.6
Q ss_pred CCCeEEEec------------CCCCceEEEeec-hhhhhhhcc------CCCceEEecCCCCCCC------CcceEeccc
Q 036440 27 RLGSLVDVG------------AFPCVKCTEFDQ-PHVVANLLD------TNNLKYLADDFFQSIP------PVCMIPLRL 81 (181)
Q Consensus 27 ~~~~lvDvG------------~~P~l~~~~~Dl-P~Vv~~a~~------~~ri~~~~gDff~~~P------~~d~~~~~~ 81 (181)
.-.+|+||| .+|+.+.+.+|. |..++.+.. -.+++++.+|..+-.+ ..|++
T Consensus 80 ~~~~vLDiG~G~G~~~i~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~l~~v~~~~~d~~~~~~~~~~~~~fD~I---- 155 (249)
T 3g89_A 80 GPLRVLDLGTGAGFPGLPLKIVRPELELVLVDATRKKVAFVERAIEVLGLKGARALWGRAEVLAREAGHREAYARA---- 155 (249)
T ss_dssp SSCEEEEETCTTTTTHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHTCSSEEEEECCHHHHTTSTTTTTCEEEE----
T ss_pred CCCEEEEEcCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhCCCceEEEECcHHHhhcccccCCCceEE----
Confidence 456899999 679999999997 444444431 2359999999875321 25777
Q ss_pred cchhhhHHhhhhhhhhcCCCccchhhhhhcccccceeeeeeccCChHHHHHHHHHHHHHhccCC------ccCCHHH---
Q 036440 82 GYSHIKIMIAFFIRLVVGRGRLHIFSWLNFMKRVINMQIIIHVFGDEESVKILKICREAITSKA------KLSTEKE--- 152 (181)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~iLHdw~D~~~~~iL~~~~~a~~~~g------~eRt~~E--- 152 (181)
+.+ .+.+ -..+++.+...++||| .....+|
T Consensus 156 -----------------------------------~s~-a~~~-----~~~ll~~~~~~LkpgG~l~~~~g~~~~~e~~~ 194 (249)
T 3g89_A 156 -----------------------------------VAR-AVAP-----LCVLSELLLPFLEVGGAAVAMKGPRVEEELAP 194 (249)
T ss_dssp -----------------------------------EEE-SSCC-----HHHHHHHHGGGEEEEEEEEEEECSCCHHHHTT
T ss_pred -----------------------------------EEC-CcCC-----HHHHHHHHHHHcCCCeEEEEEeCCCcHHHHHH
Confidence 332 2222 2468999999999999 2223444
Q ss_pred HHHHHHhCCCeEEEEEEc
Q 036440 153 LESLFVEVHFHHYKITPL 170 (181)
Q Consensus 153 ~~~Ll~~aGf~~~~i~~~ 170 (181)
+...+++.||+..++.+.
T Consensus 195 ~~~~l~~~G~~~~~~~~~ 212 (249)
T 3g89_A 195 LPPALERLGGRLGEVLAL 212 (249)
T ss_dssp HHHHHHHHTEEEEEEEEE
T ss_pred HHHHHHHcCCeEEEEEEe
Confidence 566678889999888754
|
| >2gpy_A O-methyltransferase; structural genomics, PSI, protein structure initiative, NEW research center for structural genomics, nysgxrc; HET: MSE; 1.90A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=95.07 E-value=0.012 Score=46.45 Aligned_cols=46 Identities=13% Similarity=0.268 Sum_probs=36.2
Q ss_pred hcCCCeEEEec------------CCCCceEEEeec-hhhhhhhcc-------CCCceEEecCCCCC
Q 036440 25 FERLGSLVDVG------------AFPCVKCTEFDQ-PHVVANLLD-------TNNLKYLADDFFQS 70 (181)
Q Consensus 25 ~~~~~~lvDvG------------~~P~l~~~~~Dl-P~Vv~~a~~-------~~ri~~~~gDff~~ 70 (181)
.....+|||+| .+|+.+.+.+|. |..++.+.. .++++++.+|+.+.
T Consensus 52 ~~~~~~vLdiG~G~G~~~~~la~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~ 117 (233)
T 2gpy_A 52 MAAPARILEIGTAIGYSAIRMAQALPEATIVSIERDERRYEEAHKHVKALGLESRIELLFGDALQL 117 (233)
T ss_dssp HHCCSEEEEECCTTSHHHHHHHHHCTTCEEEEECCCHHHHHHHHHHHHHTTCTTTEEEECSCGGGS
T ss_pred ccCCCEEEEecCCCcHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECCHHHH
Confidence 44567999999 678889999998 666665542 36899999999874
|
| >2uyo_A Hypothetical protein ML2640; putative methyltransferase, transferas; 1.7A {Mycobacterium leprae} SCOP: c.66.1.57 PDB: 2ckd_A 2uyq_A* | Back alignment and structure |
|---|
Probab=95.07 E-value=0.073 Score=45.68 Aligned_cols=45 Identities=24% Similarity=0.323 Sum_probs=35.7
Q ss_pred cCCCeEEEec----------CCC-CceEEEeechhhhhhhc---------cCCCceEEecCCCCC
Q 036440 26 ERLGSLVDVG----------AFP-CVKCTEFDQPHVVANLL---------DTNNLKYLADDFFQS 70 (181)
Q Consensus 26 ~~~~~lvDvG----------~~P-~l~~~~~DlP~Vv~~a~---------~~~ri~~~~gDff~~ 70 (181)
.+.+.+|++| ..| +++...+|+|.|++... .+++..+++.|+.+.
T Consensus 101 ~g~~QvV~LGaGlDTra~Rl~~~~~~~v~evD~P~vi~~k~~lL~~~~~~~~~~~~~v~~Dl~d~ 165 (310)
T 2uyo_A 101 DGIRQFVILASGLDSRAYRLDWPTGTTVYEIDQPKVLAYKSTTLAEHGVTPTADRREVPIDLRQD 165 (310)
T ss_dssp TTCCEEEEETCTTCCHHHHSCCCTTCEEEEEECHHHHHHHHHHHHHTTCCCSSEEEEEECCTTSC
T ss_pred hCCCeEEEeCCCCCchhhhccCCCCcEEEEcCCHHHHHHHHHHHHhcCCCCCCCeEEEecchHhh
Confidence 3568999999 435 58999999999987442 367899999999873
|
| >2i7c_A Spermidine synthase; transferase, structural genomics consor; HET: AAT 1PG; 1.71A {Plasmodium falciparum} PDB: 2hte_A* 3b7p_A* 3rie_A* 2pwp_A* | Back alignment and structure |
|---|
Probab=95.04 E-value=0.051 Score=45.28 Aligned_cols=101 Identities=9% Similarity=0.071 Sum_probs=65.5
Q ss_pred CCCeEEEec-----------CC-CCceEEEeec-hhhhhhhcc----------CCCceEEecCCCCCC---CC-cceEec
Q 036440 27 RLGSLVDVG-----------AF-PCVKCTEFDQ-PHVVANLLD----------TNNLKYLADDFFQSI---PP-VCMIPL 79 (181)
Q Consensus 27 ~~~~lvDvG-----------~~-P~l~~~~~Dl-P~Vv~~a~~----------~~ri~~~~gDff~~~---P~-~d~~~~ 79 (181)
...+|+|+| ++ |..+.+.+|+ |.+++.++. .+|++++.+|..+.+ +. .|++
T Consensus 78 ~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~a~~~~~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fD~I-- 155 (283)
T 2i7c_A 78 EPKNVLVVGGGDGGIIRELCKYKSVENIDICEIDETVIEVSKIYFKNISCGYEDKRVNVFIEDASKFLENVTNTYDVI-- 155 (283)
T ss_dssp SCCEEEEEECTTSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCTTTSGGGGSTTEEEEESCHHHHHHHCCSCEEEE--
T ss_pred CCCeEEEEeCCcCHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHhHHhccccCCCcEEEEECChHHHHHhCCCCceEE--
Confidence 457999999 44 6789999998 677775531 479999999987532 32 5877
Q ss_pred cccchhhhHHhhhhhhhhcCCCccchhhhhhcccccceeeeeeccCChHHH---HHHHHHHHHHhccCC--------ccC
Q 036440 80 RLGYSHIKIMIAFFIRLVVGRGRLHIFSWLNFMKRVINMQIIIHVFGDEES---VKILKICREAITSKA--------KLS 148 (181)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~iLHdw~D~~~---~~iL~~~~~a~~~~g--------~eR 148 (181)
++....| +..... .+.+++++..++|+| ...
T Consensus 156 -------------------------------------i~d~~~~-~~~~~~l~~~~~l~~~~~~L~pgG~lv~~~~~~~~ 197 (283)
T 2i7c_A 156 -------------------------------------IVDSSDP-IGPAETLFNQNFYEKIYNALKPNGYCVAQCESLWI 197 (283)
T ss_dssp -------------------------------------EEECCCT-TTGGGGGSSHHHHHHHHHHEEEEEEEEEECCCTTT
T ss_pred -------------------------------------EEcCCCC-CCcchhhhHHHHHHHHHHhcCCCcEEEEECCCccc
Confidence 3322222 222222 689999999999999 122
Q ss_pred CHH---HHHHHHHhCCCeEEEEE
Q 036440 149 TEK---ELESLFVEVHFHHYKIT 168 (181)
Q Consensus 149 t~~---E~~~Ll~~aGf~~~~i~ 168 (181)
..+ ++.+.++++ |..+++.
T Consensus 198 ~~~~~~~~~~~l~~~-F~~v~~~ 219 (283)
T 2i7c_A 198 HVGTIKNMIGYAKKL-FKKVEYA 219 (283)
T ss_dssp CHHHHHHHHHHHHTT-CSEEEEE
T ss_pred CHHHHHHHHHHHHHH-CCceEEE
Confidence 333 334444444 7777654
|
| >1inl_A Spermidine synthase; beta-barrel, rossman fold, structural genomics, PSI, protein structure initiative; 1.50A {Thermotoga maritima} SCOP: c.66.1.17 PDB: 1jq3_A* | Back alignment and structure |
|---|
Probab=94.98 E-value=0.027 Score=47.37 Aligned_cols=51 Identities=8% Similarity=0.020 Sum_probs=37.3
Q ss_pred CCCeEEEec-----------CC-CCceEEEeec-hhhhhhhcc----------CCCceEEecCCCCCCC---C-cceE
Q 036440 27 RLGSLVDVG-----------AF-PCVKCTEFDQ-PHVVANLLD----------TNNLKYLADDFFQSIP---P-VCMI 77 (181)
Q Consensus 27 ~~~~lvDvG-----------~~-P~l~~~~~Dl-P~Vv~~a~~----------~~ri~~~~gDff~~~P---~-~d~~ 77 (181)
...+|+|+| ++ |..+.+.+|+ |.+++.+.. .+|++++.+|.++.++ . .|++
T Consensus 90 ~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~~~~a~~~~~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fD~I 167 (296)
T 1inl_A 90 NPKKVLIIGGGDGGTLREVLKHDSVEKAILCEVDGLVIEAARKYLKQTSCGFDDPRAEIVIANGAEYVRKFKNEFDVI 167 (296)
T ss_dssp SCCEEEEEECTTCHHHHHHTTSTTCSEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHGGGCSSCEEEE
T ss_pred CCCEEEEEcCCcCHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHhHhhccccCCCceEEEECcHHHHHhhCCCCceEE
Confidence 457999999 44 6789999998 677665431 4799999999875332 2 5777
|
| >2avd_A Catechol-O-methyltransferase; structural genomics, structural genomics consortium, SGC; HET: SAM; 1.70A {Homo sapiens} SCOP: c.66.1.1 | Back alignment and structure |
|---|
Probab=94.98 E-value=0.067 Score=41.62 Aligned_cols=47 Identities=9% Similarity=0.080 Sum_probs=35.7
Q ss_pred hhcCCCeEEEec------------CCC-CceEEEeec-hhhhhhhc-------cCCCceEEecCCCCC
Q 036440 24 IFERLGSLVDVG------------AFP-CVKCTEFDQ-PHVVANLL-------DTNNLKYLADDFFQS 70 (181)
Q Consensus 24 d~~~~~~lvDvG------------~~P-~l~~~~~Dl-P~Vv~~a~-------~~~ri~~~~gDff~~ 70 (181)
......+|+|+| ++| +.+.+.+|. |..++.+. ..++++++.+|+++.
T Consensus 66 ~~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~ 133 (229)
T 2avd_A 66 RLIQAKKALDLGTFTGYSALALALALPADGRVVTCEVDAQPPELGRPLWRQAEAEHKIDLRLKPALET 133 (229)
T ss_dssp HHTTCCEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCSHHHHHHHHHHHHTTCTTTEEEEESCHHHH
T ss_pred HhcCCCEEEEEcCCccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHCCCCCeEEEEEcCHHHH
Confidence 345668999999 556 789999998 66666553 247999999998754
|
| >2vdv_E TRNA (guanine-N(7)-)-methyltransferase; S-adenosyl-L-methionine, phosphorylation, M7G, spout MT, tRNA processing; HET: SAM; 2.30A {Saccharomyces cerevisiae} PDB: 2vdu_E | Back alignment and structure |
|---|
Probab=94.88 E-value=0.039 Score=44.19 Aligned_cols=46 Identities=20% Similarity=0.316 Sum_probs=34.4
Q ss_pred CCCeEEEec------------CCCCceEEEeec-hhhhhhhc--------------cCCCceEEecCCCCCCC
Q 036440 27 RLGSLVDVG------------AFPCVKCTEFDQ-PHVVANLL--------------DTNNLKYLADDFFQSIP 72 (181)
Q Consensus 27 ~~~~lvDvG------------~~P~l~~~~~Dl-P~Vv~~a~--------------~~~ri~~~~gDff~~~P 72 (181)
.-.++|||| .+|..+.+.+|. |..++.+. .-++++++.+|.++.+|
T Consensus 49 ~~~~vLDiGcG~G~~~~~la~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~nv~~~~~D~~~~l~ 121 (246)
T 2vdv_E 49 KKVTIADIGCGFGGLMIDLSPAFPEDLILGMEIRVQVTNYVEDRIIALRNNTASKHGFQNINVLRGNAMKFLP 121 (246)
T ss_dssp CCEEEEEETCTTSHHHHHHHHHSTTSEEEEEESCHHHHHHHHHHHHHHHHTC-CCSTTTTEEEEECCTTSCGG
T ss_pred CCCEEEEEcCCCCHHHHHHHHhCCCCCEEEEEcCHHHHHHHHHHHHHHhhccccccCCCcEEEEeccHHHHHH
Confidence 346899999 789999999996 55555442 12589999999987554
|
| >1mjf_A Spermidine synthase; spermidine synthetase, structural genomics, PSI, protein structure initiative; 1.80A {Pyrococcus furiosus} SCOP: c.66.1.17 PDB: 2e5w_A* 2zsu_A* | Back alignment and structure |
|---|
Probab=94.61 E-value=0.064 Score=44.55 Aligned_cols=51 Identities=14% Similarity=0.109 Sum_probs=37.4
Q ss_pred CCCeEEEec-----------CCCCceEEEeec-hhhhhhhc----------------cCCCceEEecCCCCCC--CC-cc
Q 036440 27 RLGSLVDVG-----------AFPCVKCTEFDQ-PHVVANLL----------------DTNNLKYLADDFFQSI--PP-VC 75 (181)
Q Consensus 27 ~~~~lvDvG-----------~~P~l~~~~~Dl-P~Vv~~a~----------------~~~ri~~~~gDff~~~--P~-~d 75 (181)
...+|+|+| ++|..+.+.+|+ |.+++.++ ..+|++++.+|..+.+ +. .|
T Consensus 75 ~~~~VLdiG~G~G~~~~~l~~~~~~~v~~vDid~~~i~~ar~~~~~~~~l~~~~~~~~~~~v~~~~~D~~~~l~~~~~fD 154 (281)
T 1mjf_A 75 KPKRVLVIGGGDGGTVREVLQHDVDEVIMVEIDEDVIMVSKDLIKIDNGLLEAMLNGKHEKAKLTIGDGFEFIKNNRGFD 154 (281)
T ss_dssp CCCEEEEEECTTSHHHHHHTTSCCSEEEEEESCHHHHHHHHHHTCTTTTHHHHHHTTCCSSEEEEESCHHHHHHHCCCEE
T ss_pred CCCeEEEEcCCcCHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHhhccccccccccCCCCcEEEEECchHHHhcccCCee
Confidence 457899999 558789999998 67776543 2468999999976532 22 57
Q ss_pred eE
Q 036440 76 MI 77 (181)
Q Consensus 76 ~~ 77 (181)
++
T Consensus 155 ~I 156 (281)
T 1mjf_A 155 VI 156 (281)
T ss_dssp EE
T ss_pred EE
Confidence 77
|
| >1g6q_1 HnRNP arginine N-methyltransferase; SAM-binding domain, beta-barrel, mixed alpha-beta, hexamer; 2.90A {Saccharomyces cerevisiae} SCOP: c.66.1.6 | Back alignment and structure |
|---|
Probab=94.38 E-value=0.085 Score=44.67 Aligned_cols=53 Identities=15% Similarity=0.197 Sum_probs=38.4
Q ss_pred hcCCCeEEEec-----------CCCCceEEEeechhhhhhhc-------cCCCceEEecCCCCC-CCC--cceE
Q 036440 25 FERLGSLVDVG-----------AFPCVKCTEFDQPHVVANLL-------DTNNLKYLADDFFQS-IPP--VCMI 77 (181)
Q Consensus 25 ~~~~~~lvDvG-----------~~P~l~~~~~DlP~Vv~~a~-------~~~ri~~~~gDff~~-~P~--~d~~ 77 (181)
...-.+|+||| +.+..+.+.+|....++.+. ..++|+++.+|+.+- +|. .|++
T Consensus 36 ~~~~~~VLDiGcGtG~ls~~la~~g~~~v~~vD~s~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~I 109 (328)
T 1g6q_1 36 LFKDKIVLDVGCGTGILSMFAAKHGAKHVIGVDMSSIIEMAKELVELNGFSDKITLLRGKLEDVHLPFPKVDII 109 (328)
T ss_dssp HHTTCEEEEETCTTSHHHHHHHHTCCSEEEEEESSTHHHHHHHHHHHTTCTTTEEEEESCTTTSCCSSSCEEEE
T ss_pred hcCCCEEEEecCccHHHHHHHHHCCCCEEEEEChHHHHHHHHHHHHHcCCCCCEEEEECchhhccCCCCcccEE
Confidence 44567999999 44556889999876555443 257899999999863 552 6887
|
| >3ckk_A TRNA (guanine-N(7)-)-methyltransferase; mettl1, S-adenosyl-L-methionine, tRNA Pro structural genomics, structural genomics consortium, SGC; HET: SAM; 1.55A {Homo sapiens} | Back alignment and structure |
|---|
Probab=94.34 E-value=0.1 Score=42.29 Aligned_cols=45 Identities=16% Similarity=0.242 Sum_probs=34.0
Q ss_pred CCCeEEEec------------CCCCceEEEeec-hhhhhhhc------------cCCCceEEecCCCCCC
Q 036440 27 RLGSLVDVG------------AFPCVKCTEFDQ-PHVVANLL------------DTNNLKYLADDFFQSI 71 (181)
Q Consensus 27 ~~~~lvDvG------------~~P~l~~~~~Dl-P~Vv~~a~------------~~~ri~~~~gDff~~~ 71 (181)
.-.++|||| .+|+...+.+|+ |..++.+. ...+|+++.+|..+.+
T Consensus 46 ~~~~vLDiGcG~G~~~~~la~~~p~~~v~GiDis~~~l~~A~~~~~~l~~~~~~~~~nv~~~~~d~~~~l 115 (235)
T 3ckk_A 46 AQVEFADIGCGYGGLLVELSPLFPDTLILGLEIRVKVSDYVQDRIRALRAAPAGGFQNIACLRSNAMKHL 115 (235)
T ss_dssp CCEEEEEETCTTCHHHHHHGGGSTTSEEEEEESCHHHHHHHHHHHHHHHHSTTCCCTTEEEEECCTTTCH
T ss_pred CCCeEEEEccCCcHHHHHHHHHCCCCeEEEEECCHHHHHHHHHHHHHHHHHHhcCCCeEEEEECcHHHhh
Confidence 345899999 789999999998 55555332 2468999999987643
|
| >3dr5_A Putative O-methyltransferase; Q8NRD3, CGL1119, PF01596, CGR117, NESG, structural genomics, PSI-2, protein structure initiative; 2.25A {Corynebacterium glutamicum} | Back alignment and structure |
|---|
Probab=94.31 E-value=0.096 Score=41.94 Aligned_cols=42 Identities=7% Similarity=0.127 Sum_probs=31.6
Q ss_pred eEEEec------------CCC-CceEEEeec-hhhhhhhc-------cC-CCceEEecCCCCCC
Q 036440 30 SLVDVG------------AFP-CVKCTEFDQ-PHVVANLL-------DT-NNLKYLADDFFQSI 71 (181)
Q Consensus 30 ~lvDvG------------~~P-~l~~~~~Dl-P~Vv~~a~-------~~-~ri~~~~gDff~~~ 71 (181)
++||+| ++| +.+.+.+|. |..++.+. .. +||+++.+|..+.+
T Consensus 59 ~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~~i~~~~gda~~~l 122 (221)
T 3dr5_A 59 GAIAITPAAGLVGLYILNGLADNTTLTCIDPESEHQRQAKALFREAGYSPSRVRFLLSRPLDVM 122 (221)
T ss_dssp EEEEESTTHHHHHHHHHHHSCTTSEEEEECSCHHHHHHHHHHHHHTTCCGGGEEEECSCHHHHG
T ss_pred CEEEEcCCchHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCcCcEEEEEcCHHHHH
Confidence 899999 454 789999998 55555443 24 69999999987643
|
| >2pt6_A Spermidine synthase; transferase, structural genomics consor SGC,dcadoMet complex; HET: S4M 1PG; 2.00A {Plasmodium falciparum} PDB: 2pss_A* 2pt9_A* | Back alignment and structure |
|---|
Probab=94.23 E-value=0.089 Score=44.89 Aligned_cols=51 Identities=10% Similarity=0.083 Sum_probs=38.0
Q ss_pred CCCeEEEec-----------CC-CCceEEEeec-hhhhhhhcc----------CCCceEEecCCCCCC---CC-cceE
Q 036440 27 RLGSLVDVG-----------AF-PCVKCTEFDQ-PHVVANLLD----------TNNLKYLADDFFQSI---PP-VCMI 77 (181)
Q Consensus 27 ~~~~lvDvG-----------~~-P~l~~~~~Dl-P~Vv~~a~~----------~~ri~~~~gDff~~~---P~-~d~~ 77 (181)
...+|+|+| ++ |..+.+.+|+ |.+++.++. .+|++++.+|.++.+ +. .|++
T Consensus 116 ~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDis~~~l~~ar~~~~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fDvI 193 (321)
T 2pt6_A 116 EPKNVLVVGGGDGGIIRELCKYKSVENIDICEIDETVIEVSKIYFKNISCGYEDKRVNVFIEDASKFLENVTNTYDVI 193 (321)
T ss_dssp SCCEEEEEECTTCHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCTTTSGGGGSTTEEEEESCHHHHHHHCCSCEEEE
T ss_pred CCCEEEEEcCCccHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHhhccccCCCcEEEEEccHHHHHhhcCCCceEE
Confidence 457999999 44 6789999998 677765531 468999999987643 22 5777
|
| >1jg1_A PIMT;, protein-L-isoaspartate O-methyltransferase; rossmann methyltransferase, protein repair isomerization; HET: SAH; 1.20A {Pyrococcus furiosus} SCOP: c.66.1.7 PDB: 1jg2_A* 1jg3_A* 1jg4_A* | Back alignment and structure |
|---|
Probab=94.13 E-value=0.054 Score=42.88 Aligned_cols=60 Identities=17% Similarity=0.283 Sum_probs=42.2
Q ss_pred HHHHHHhhhhhcCCCeEEEec------------CCCCceEEEeec-hhhhhhhcc------CCCceEEecCCCCCCCC--
Q 036440 15 SLALKYCKQIFERLGSLVDVG------------AFPCVKCTEFDQ-PHVVANLLD------TNNLKYLADDFFQSIPP-- 73 (181)
Q Consensus 15 ~~~l~~~~~d~~~~~~lvDvG------------~~P~l~~~~~Dl-P~Vv~~a~~------~~ri~~~~gDff~~~P~-- 73 (181)
..+++.. +...-.+|||+| ..| .+.+.+|. |..++.+.. .+++++..+|+...+|.
T Consensus 81 ~~~~~~l--~~~~~~~vLdiG~G~G~~~~~la~~~~-~~v~~vD~~~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~ 157 (235)
T 1jg1_A 81 AIMLEIA--NLKPGMNILEVGTGSGWNAALISEIVK-TDVYTIERIPELVEFAKRNLERAGVKNVHVILGDGSKGFPPKA 157 (235)
T ss_dssp HHHHHHH--TCCTTCCEEEECCTTSHHHHHHHHHHC-SCEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCGGGCCGGGC
T ss_pred HHHHHhc--CCCCCCEEEEEeCCcCHHHHHHHHHhC-CEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEECCcccCCCCCC
Confidence 3455555 456667999999 455 78999996 666665542 24699999998666654
Q ss_pred -cceE
Q 036440 74 -VCMI 77 (181)
Q Consensus 74 -~d~~ 77 (181)
.|++
T Consensus 158 ~fD~I 162 (235)
T 1jg1_A 158 PYDVI 162 (235)
T ss_dssp CEEEE
T ss_pred CccEE
Confidence 4887
|
| >2yxe_A Protein-L-isoaspartate O-methyltransferase; rossman-type fold, alpha/beta/alpha sandwich structure, STRU genomics, NPPSFA; 2.00A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=94.03 E-value=0.089 Score=40.51 Aligned_cols=81 Identities=7% Similarity=0.014 Sum_probs=57.5
Q ss_pred HHHHHhhhhhcCCCeEEEec------------CC-CCceEEEeec-hhhhhhhcc------CCCceEEecCCCCCCC---
Q 036440 16 LALKYCKQIFERLGSLVDVG------------AF-PCVKCTEFDQ-PHVVANLLD------TNNLKYLADDFFQSIP--- 72 (181)
Q Consensus 16 ~~l~~~~~d~~~~~~lvDvG------------~~-P~l~~~~~Dl-P~Vv~~a~~------~~ri~~~~gDff~~~P--- 72 (181)
.+++.. ....-.+|||+| .. |..+.+.+|. |..++.+.. .+++++..+|+.+.+|
T Consensus 68 ~~~~~~--~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~ 145 (215)
T 2yxe_A 68 MMCELL--DLKPGMKVLEIGTGCGYHAAVTAEIVGEDGLVVSIERIPELAEKAERTLRKLGYDNVIVIVGDGTLGYEPLA 145 (215)
T ss_dssp HHHHHT--TCCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHTCTTEEEEESCGGGCCGGGC
T ss_pred HHHHhh--CCCCCCEEEEECCCccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCeEEEECCcccCCCCCC
Confidence 344444 445567999999 33 6688999998 566665542 2579999999977665
Q ss_pred CcceEeccccchhhhHHhhhhhhhhcCCCccchhhhhhcccccceeeeeeccCChHHHHHHHHHHHHHhccCC
Q 036440 73 PVCMIPLRLGYSHIKIMIAFFIRLVVGRGRLHIFSWLNFMKRVINMQIIIHVFGDEESVKILKICREAITSKA 145 (181)
Q Consensus 73 ~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~iLHdw~D~~~~~iL~~~~~a~~~~g 145 (181)
..|++ +....+|...+ ++...++|||
T Consensus 146 ~fD~v---------------------------------------~~~~~~~~~~~--------~~~~~L~pgG 171 (215)
T 2yxe_A 146 PYDRI---------------------------------------YTTAAGPKIPE--------PLIRQLKDGG 171 (215)
T ss_dssp CEEEE---------------------------------------EESSBBSSCCH--------HHHHTEEEEE
T ss_pred CeeEE---------------------------------------EECCchHHHHH--------HHHHHcCCCc
Confidence 25887 77777777663 6678888988
|
| >3fpf_A Mtnas, putative uncharacterized protein; thermonicotianamine, nicotianamine, biosynthetic protein; HET: TNA MTA; 1.66A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 3fpe_A* 3fph_A* 3fpg_A* 3fpj_A* 3o31_A* | Back alignment and structure |
|---|
Probab=93.92 E-value=0.1 Score=45.18 Aligned_cols=76 Identities=11% Similarity=0.169 Sum_probs=57.1
Q ss_pred hcCCCeEEEec------------CCCCceEEEeec-hhhhhhhcc------CCCceEEecCCCCCCCC--cceEeccccc
Q 036440 25 FERLGSLVDVG------------AFPCVKCTEFDQ-PHVVANLLD------TNNLKYLADDFFQSIPP--VCMIPLRLGY 83 (181)
Q Consensus 25 ~~~~~~lvDvG------------~~P~l~~~~~Dl-P~Vv~~a~~------~~ri~~~~gDff~~~P~--~d~~~~~~~~ 83 (181)
...-.+|+||| +.|+.+.+.+|+ |..++.|+. -+||+++.+|..+ +|. .|++
T Consensus 120 l~~g~rVLDIGcG~G~~ta~~lA~~~ga~V~gIDis~~~l~~Ar~~~~~~gl~~v~~v~gDa~~-l~d~~FDvV------ 192 (298)
T 3fpf_A 120 FRRGERAVFIGGGPLPLTGILLSHVYGMRVNVVEIEPDIAELSRKVIEGLGVDGVNVITGDETV-IDGLEFDVL------ 192 (298)
T ss_dssp CCTTCEEEEECCCSSCHHHHHHHHTTCCEEEEEESSHHHHHHHHHHHHHHTCCSEEEEESCGGG-GGGCCCSEE------
T ss_pred CCCcCEEEEECCCccHHHHHHHHHccCCEEEEEECCHHHHHHHHHHHHhcCCCCeEEEECchhh-CCCCCcCEE------
Confidence 34557999999 458899999998 677776642 2799999999986 443 5877
Q ss_pred hhhhHHhhhhhhhhcCCCccchhhhhhcccccceeeeeeccCChHHHHHHHHHHHHHhccCC
Q 036440 84 SHIKIMIAFFIRLVVGRGRLHIFSWLNFMKRVINMQIIIHVFGDEESVKILKICREAITSKA 145 (181)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~iLHdw~D~~~~~iL~~~~~a~~~~g 145 (181)
++... -++-.++++.++..++|||
T Consensus 193 ---------------------------------~~~a~-----~~d~~~~l~el~r~LkPGG 216 (298)
T 3fpf_A 193 ---------------------------------MVAAL-----AEPKRRVFRNIHRYVDTET 216 (298)
T ss_dssp ---------------------------------EECTT-----CSCHHHHHHHHHHHCCTTC
T ss_pred ---------------------------------EECCC-----ccCHHHHHHHHHHHcCCCc
Confidence 33322 2445689999999999999
|
| >3fzg_A 16S rRNA methylase; methyltransferase, plasmid, transferase; HET: SAM; 2.00A {Escherichia coli} | Back alignment and structure |
|---|
Probab=93.85 E-value=0.072 Score=44.05 Aligned_cols=102 Identities=13% Similarity=0.109 Sum_probs=69.2
Q ss_pred cCCCeEEEec------------CCCCceEEEeech-hhhhhhc-------cCCCceEEecCCCCCCCC--cceEeccccc
Q 036440 26 ERLGSLVDVG------------AFPCVKCTEFDQP-HVVANLL-------DTNNLKYLADDFFQSIPP--VCMIPLRLGY 83 (181)
Q Consensus 26 ~~~~~lvDvG------------~~P~l~~~~~DlP-~Vv~~a~-------~~~ri~~~~gDff~~~P~--~d~~~~~~~~ 83 (181)
....+|+|+| ..|+++.+..|.- ..++.++ ...++++ .|..+..|. .|++
T Consensus 48 ~~~~~VLDlGCG~GplAl~l~~~~p~a~~~A~Di~~~~leiar~~~~~~g~~~~v~~--~d~~~~~~~~~~DvV------ 119 (200)
T 3fzg_A 48 KHVSSILDFGCGFNPLALYQWNENEKIIYHAYDIDRAEIAFLSSIIGKLKTTIKYRF--LNKESDVYKGTYDVV------ 119 (200)
T ss_dssp CCCSEEEEETCTTHHHHHHHHCSSCCCEEEEECSCHHHHHHHHHHHHHSCCSSEEEE--ECCHHHHTTSEEEEE------
T ss_pred CCCCeEEEecCCCCHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHhcCCCccEEE--ecccccCCCCCcChh------
Confidence 4568999999 7999999999995 4555443 1335666 777765544 6999
Q ss_pred hhhhHHhhhhhhhhcCCCccchhhhhhcccccceeeeeeccCChHHHHHHHHHHHHHhccCC----------------c-
Q 036440 84 SHIKIMIAFFIRLVVGRGRLHIFSWLNFMKRVINMQIIIHVFGDEESVKILKICREAITSKA----------------K- 146 (181)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~iLHdw~D~~~~~iL~~~~~a~~~~g----------------~- 146 (181)
++-.+||-- ++.-..++ +++.+++|+| .
T Consensus 120 ---------------------------------La~k~LHlL-~~~~~al~-~v~~~L~pggvfISfptksl~Gr~~gm~ 164 (200)
T 3fzg_A 120 ---------------------------------FLLKMLPVL-KQQDVNIL-DFLQLFHTQNFVISFPIKSLSGKEKGME 164 (200)
T ss_dssp ---------------------------------EEETCHHHH-HHTTCCHH-HHHHTCEEEEEEEEEECCCCC--CTTCC
T ss_pred ---------------------------------hHhhHHHhh-hhhHHHHH-HHHHHhCCCCEEEEeChHHhcCCCcchh
Confidence 888999998 54444444 8999999998 2
Q ss_pred cCCHHHHHHHHHhCCCeEEEEEEcC
Q 036440 147 LSTEKELESLFVEVHFHHYKITPLF 171 (181)
Q Consensus 147 eRt~~E~~~Ll~~aGf~~~~i~~~~ 171 (181)
+.=.++|++.+ ...+.+++-...+
T Consensus 165 ~~Y~~~~~~~~-~~~~~~~~~~~~~ 188 (200)
T 3fzg_A 165 ENYQLWFESFT-KGWIKILDSKVIG 188 (200)
T ss_dssp CCHHHHHHHHT-TTTSCEEEEEEET
T ss_pred hhHHHHHHHhc-cCcceeeeeeeeC
Confidence 22244556666 4555555544443
|
| >2fyt_A Protein arginine N-methyltransferase 3; structural genomics, structural genomics consortium, SGC; HET: SAH; 2.00A {Homo sapiens} SCOP: c.66.1.6 PDB: 3smq_A* 1f3l_A* | Back alignment and structure |
|---|
Probab=93.84 E-value=0.12 Score=44.06 Aligned_cols=53 Identities=19% Similarity=0.298 Sum_probs=38.5
Q ss_pred hcCCCeEEEec-----------CCCCceEEEeechhhhhhhcc-------CCCceEEecCCCC-CCCC--cceE
Q 036440 25 FERLGSLVDVG-----------AFPCVKCTEFDQPHVVANLLD-------TNNLKYLADDFFQ-SIPP--VCMI 77 (181)
Q Consensus 25 ~~~~~~lvDvG-----------~~P~l~~~~~DlP~Vv~~a~~-------~~ri~~~~gDff~-~~P~--~d~~ 77 (181)
...-.+||||| +.+..+.+.+|....++.+.. .++|+++.+|+.+ ++|. .|++
T Consensus 62 ~~~~~~VLDiGcGtG~ls~~la~~g~~~v~gvD~s~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~I 135 (340)
T 2fyt_A 62 IFKDKVVLDVGCGTGILSMFAAKAGAKKVLGVDQSEILYQAMDIIRLNKLEDTITLIKGKIEEVHLPVEKVDVI 135 (340)
T ss_dssp GTTTCEEEEETCTTSHHHHHHHHTTCSEEEEEESSTHHHHHHHHHHHTTCTTTEEEEESCTTTSCCSCSCEEEE
T ss_pred hcCCCEEEEeeccCcHHHHHHHHcCCCEEEEEChHHHHHHHHHHHHHcCCCCcEEEEEeeHHHhcCCCCcEEEE
Confidence 44557999999 345568899998766555432 4799999999986 3552 6887
|
| >3q7e_A Protein arginine N-methyltransferase 1; HET: SAH; 2.20A {Rattus norvegicus} PDB: 1orh_A* 1ori_A* 1or8_A* | Back alignment and structure |
|---|
Probab=93.79 E-value=0.1 Score=44.59 Aligned_cols=81 Identities=10% Similarity=0.064 Sum_probs=56.2
Q ss_pred cCCCeEEEec-----------CCCCceEEEeechhhhhhhc-------cCCCceEEecCCCC-CCCC--cceEeccccch
Q 036440 26 ERLGSLVDVG-----------AFPCVKCTEFDQPHVVANLL-------DTNNLKYLADDFFQ-SIPP--VCMIPLRLGYS 84 (181)
Q Consensus 26 ~~~~~lvDvG-----------~~P~l~~~~~DlP~Vv~~a~-------~~~ri~~~~gDff~-~~P~--~d~~~~~~~~~ 84 (181)
..-.+||||| +.+..+.+.+|..+.++.+. ..++|+++.+|+.+ ++|. .|++
T Consensus 65 ~~~~~VLDvGcG~G~~~~~la~~g~~~v~gvD~s~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~I------- 137 (349)
T 3q7e_A 65 FKDKVVLDVGSGTGILCMFAAKAGARKVIGIECSSISDYAVKIVKANKLDHVVTIIKGKVEEVELPVEKVDII------- 137 (349)
T ss_dssp HTTCEEEEESCTTSHHHHHHHHTTCSEEEEEECSTHHHHHHHHHHHTTCTTTEEEEESCTTTCCCSSSCEEEE-------
T ss_pred CCCCEEEEEeccchHHHHHHHHCCCCEEEEECcHHHHHHHHHHHHHcCCCCcEEEEECcHHHccCCCCceEEE-------
Confidence 3457999999 44667899999976555443 25779999999987 4663 6887
Q ss_pred hhhHHhhhhhhhhcCCCccchhhhhhcccccceeeeeeccC-ChHHHHHHHHHHHHHhccCC
Q 036440 85 HIKIMIAFFIRLVVGRGRLHIFSWLNFMKRVINMQIIIHVF-GDEESVKILKICREAITSKA 145 (181)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~iLHdw-~D~~~~~iL~~~~~a~~~~g 145 (181)
+...+.|.. ..+....+|+.+...++|||
T Consensus 138 --------------------------------is~~~~~~l~~~~~~~~~l~~~~r~LkpgG 167 (349)
T 3q7e_A 138 --------------------------------ISEWMGYCLFYESMLNTVLHARDKWLAPDG 167 (349)
T ss_dssp --------------------------------EECCCBBTBTBTCCHHHHHHHHHHHEEEEE
T ss_pred --------------------------------EEccccccccCchhHHHHHHHHHHhCCCCC
Confidence 333222222 22334468899999999999
|
| >3tma_A Methyltransferase; thump domain; 2.05A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=93.78 E-value=0.27 Score=41.64 Aligned_cols=121 Identities=9% Similarity=-0.112 Sum_probs=78.1
Q ss_pred HHHHHHhhhhhcCCCeEEEec------------CC-CCceEEEeec-hhhhhhhcc------CCCceEEecCCCCC-CC-
Q 036440 15 SLALKYCKQIFERLGSLVDVG------------AF-PCVKCTEFDQ-PHVVANLLD------TNNLKYLADDFFQS-IP- 72 (181)
Q Consensus 15 ~~~l~~~~~d~~~~~~lvDvG------------~~-P~l~~~~~Dl-P~Vv~~a~~------~~ri~~~~gDff~~-~P- 72 (181)
..++... ++..-..++|+| .. |..+.+.+|. |..++.+.. -++|++..+|+.+- .|
T Consensus 193 ~~l~~~~--~~~~~~~vLD~gcGsG~~~ie~a~~~~~~~~v~g~Di~~~~i~~a~~n~~~~g~~~i~~~~~D~~~~~~~~ 270 (354)
T 3tma_A 193 QALLRLA--DARPGMRVLDPFTGSGTIALEAASTLGPTSPVYAGDLDEKRLGLAREAALASGLSWIRFLRADARHLPRFF 270 (354)
T ss_dssp HHHHHHT--TCCTTCCEEESSCTTSHHHHHHHHHHCTTSCEEEEESCHHHHHHHHHHHHHTTCTTCEEEECCGGGGGGTC
T ss_pred HHHHHHh--CCCCCCEEEeCCCCcCHHHHHHHHhhCCCceEEEEECCHHHHHHHHHHHHHcCCCceEEEeCChhhCcccc
Confidence 4445555 577778999999 44 8899999998 666665542 12899999999873 22
Q ss_pred -CcceEeccccchhhhHHhhhhhhhhcCCCccchhhhhhcccccceeeeeeccCChHHHHHHHHHHHHHhccCC----cc
Q 036440 73 -PVCMIPLRLGYSHIKIMIAFFIRLVVGRGRLHIFSWLNFMKRVINMQIIIHVFGDEESVKILKICREAITSKA----KL 147 (181)
Q Consensus 73 -~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~iLHdw~D~~~~~iL~~~~~a~~~~g----~e 147 (181)
..|++..+.-|. .+.--+.-..+.-.++++.+...++||| -.
T Consensus 271 ~~~D~Ii~npPyg---------------------------------~r~~~~~~~~~~~~~~~~~~~~~LkpgG~l~i~t 317 (354)
T 3tma_A 271 PEVDRILANPPHG---------------------------------LRLGRKEGLFHLYWDFLRGALALLPPGGRVALLT 317 (354)
T ss_dssp CCCSEEEECCCSC---------------------------------C----CHHHHHHHHHHHHHHHHTSCTTCEEEEEE
T ss_pred CCCCEEEECCCCc---------------------------------CccCCcccHHHHHHHHHHHHHHhcCCCcEEEEEe
Confidence 247773332210 0000000001122578999999999999 45
Q ss_pred CCHHHHHHHHHhCCCeEEEEEEcC
Q 036440 148 STEKELESLFVEVHFHHYKITPLF 171 (181)
Q Consensus 148 Rt~~E~~~Ll~~aGf~~~~i~~~~ 171 (181)
.+.+.++.+++ .||+..+..++.
T Consensus 318 ~~~~~~~~~~~-~g~~~~~~~~l~ 340 (354)
T 3tma_A 318 LRPALLKRALP-PGFALRHARVVE 340 (354)
T ss_dssp SCHHHHHHHCC-TTEEEEEEEECC
T ss_pred CCHHHHHHHhh-cCcEEEEEEEEE
Confidence 56666777777 999998877763
|
| >3lbf_A Protein-L-isoaspartate O-methyltransferase; modified rossman-type fold, S-adenosyl-L- methionine; HET: SAH; 1.80A {Escherichia coli} | Back alignment and structure |
|---|
Probab=93.66 E-value=0.12 Score=39.61 Aligned_cols=59 Identities=8% Similarity=0.058 Sum_probs=41.4
Q ss_pred HHHHHhhhhhcCCCeEEEec-----------CCCCceEEEeec-hhhhhhhcc------CCCceEEecCCCCCCCC---c
Q 036440 16 LALKYCKQIFERLGSLVDVG-----------AFPCVKCTEFDQ-PHVVANLLD------TNNLKYLADDFFQSIPP---V 74 (181)
Q Consensus 16 ~~l~~~~~d~~~~~~lvDvG-----------~~P~l~~~~~Dl-P~Vv~~a~~------~~ri~~~~gDff~~~P~---~ 74 (181)
.+++.. +...-.+|+|+| +. ..+.+.+|. |..++.+.. .+++++..+|..+..+. .
T Consensus 68 ~~~~~l--~~~~~~~vLdiG~G~G~~~~~la~~-~~~v~~vD~~~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~ 144 (210)
T 3lbf_A 68 RMTELL--ELTPQSRVLEIGTGSGYQTAILAHL-VQHVCSVERIKGLQWQARRRLKNLDLHNVSTRHGDGWQGWQARAPF 144 (210)
T ss_dssp HHHHHT--TCCTTCEEEEECCTTSHHHHHHHHH-SSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCGGGCCGGGCCE
T ss_pred HHHHhc--CCCCCCEEEEEcCCCCHHHHHHHHh-CCEEEEEecCHHHHHHHHHHHHHcCCCceEEEECCcccCCccCCCc
Confidence 344555 456668999999 22 567899998 666665542 34799999999986543 5
Q ss_pred ceE
Q 036440 75 CMI 77 (181)
Q Consensus 75 d~~ 77 (181)
|++
T Consensus 145 D~i 147 (210)
T 3lbf_A 145 DAI 147 (210)
T ss_dssp EEE
T ss_pred cEE
Confidence 877
|
| >2nyu_A Putative ribosomal RNA methyltransferase 2; SAM, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.76A {Homo sapiens} | Back alignment and structure |
|---|
Probab=93.65 E-value=0.13 Score=38.72 Aligned_cols=37 Identities=16% Similarity=0.336 Sum_probs=26.6
Q ss_pred HHHHHHHHHHhccCC-------ccCCHHHHHHHHHhCCCeEEEEE
Q 036440 131 VKILKICREAITSKA-------KLSTEKELESLFVEVHFHHYKIT 168 (181)
Q Consensus 131 ~~iL~~~~~a~~~~g-------~eRt~~E~~~Ll~~aGf~~~~i~ 168 (181)
.++|+.+...++||| ......++...+.+. |..+++.
T Consensus 125 ~~~l~~~~~~LkpgG~lv~~~~~~~~~~~~~~~l~~~-f~~v~~~ 168 (196)
T 2nyu_A 125 LTLLSVTPDILQPGGTFLCKTWAGSQSRRLQRRLTEE-FQNVRII 168 (196)
T ss_dssp HHHHHHHHHHEEEEEEEEEEECCSGGGHHHHHHHHHH-EEEEEEE
T ss_pred HHHHHHHHHHhcCCCEEEEEecCCccHHHHHHHHHHH-hcceEEE
Confidence 478999999999999 223446777777664 7766665
|
| >3c3y_A Pfomt, O-methyltransferase; plant secondary metabolism; HET: SAH; 1.37A {Mesembryanthemum crystallinum} | Back alignment and structure |
|---|
Probab=93.63 E-value=0.056 Score=43.43 Aligned_cols=46 Identities=17% Similarity=0.244 Sum_probs=35.3
Q ss_pred hcCCCeEEEec------------CCC-CceEEEeec-hhhhhhhc-------cCCCceEEecCCCCC
Q 036440 25 FERLGSLVDVG------------AFP-CVKCTEFDQ-PHVVANLL-------DTNNLKYLADDFFQS 70 (181)
Q Consensus 25 ~~~~~~lvDvG------------~~P-~l~~~~~Dl-P~Vv~~a~-------~~~ri~~~~gDff~~ 70 (181)
....+++||+| +.| +.+.+.+|. |..++.+. ..++|+++.+|.++.
T Consensus 68 ~~~~~~VLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~gda~~~ 134 (237)
T 3c3y_A 68 LVNAKKTIEVGVFTGYSLLLTALSIPDDGKITAIDFDREAYEIGLPFIRKAGVEHKINFIESDAMLA 134 (237)
T ss_dssp HTTCCEEEEECCTTSHHHHHHHHHSCTTCEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHH
T ss_pred hhCCCEEEEeCCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHH
Confidence 45678999999 456 789999998 66666553 356899999998764
|
| >3gjy_A Spermidine synthase; APC62791, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.47A {Corynebacterium glutamicum atcc 13032} | Back alignment and structure |
|---|
Probab=93.60 E-value=0.073 Score=46.25 Aligned_cols=48 Identities=19% Similarity=0.261 Sum_probs=38.4
Q ss_pred eEEEec------------CCCCceEEEeec-hhhhhhhcc------CCCceEEecCCCC---CCCC--cceE
Q 036440 30 SLVDVG------------AFPCVKCTEFDQ-PHVVANLLD------TNNLKYLADDFFQ---SIPP--VCMI 77 (181)
Q Consensus 30 ~lvDvG------------~~P~l~~~~~Dl-P~Vv~~a~~------~~ri~~~~gDff~---~~P~--~d~~ 77 (181)
+||||| .||+.+.+.+|+ |.+++.++. .+|++++.+|.++ ..+. .|++
T Consensus 92 rVLdIG~G~G~la~~la~~~p~~~v~~VEidp~vi~~Ar~~~~~~~~~rv~v~~~Da~~~l~~~~~~~fDvI 163 (317)
T 3gjy_A 92 RITHLGGGACTMARYFADVYPQSRNTVVELDAELARLSREWFDIPRAPRVKIRVDDARMVAESFTPASRDVI 163 (317)
T ss_dssp EEEEESCGGGHHHHHHHHHSTTCEEEEEESCHHHHHHHHHHSCCCCTTTEEEEESCHHHHHHTCCTTCEEEE
T ss_pred EEEEEECCcCHHHHHHHHHCCCcEEEEEECCHHHHHHHHHhccccCCCceEEEECcHHHHHhhccCCCCCEE
Confidence 899999 489999999999 778877652 5799999999875 3442 5887
|
| >2xyq_A Putative 2'-O-methyl transferase; transferase-viral protein complex, rossman fold; HET: SAH; 2.00A {Sars coronavirus} PDB: 2xyv_A* 2xyr_A* | Back alignment and structure |
|---|
Probab=93.54 E-value=0.21 Score=42.62 Aligned_cols=106 Identities=11% Similarity=0.030 Sum_probs=67.5
Q ss_pred cCCCeEEEecC----------------CC-CceEEEeechhhhhhhccCCCceE-EecCCCCC-CCC-cceEeccccchh
Q 036440 26 ERLGSLVDVGA----------------FP-CVKCTEFDQPHVVANLLDTNNLKY-LADDFFQS-IPP-VCMIPLRLGYSH 85 (181)
Q Consensus 26 ~~~~~lvDvG~----------------~P-~l~~~~~DlP~Vv~~a~~~~ri~~-~~gDff~~-~P~-~d~~~~~~~~~~ 85 (181)
..-.+|||+|. .| ..+.+.+|+-+.+ +++++ +.+|+.+. .+. .|++..+...
T Consensus 62 ~~g~~VLDLGcGsg~~~GpGs~~~a~~~~~~~~V~gvDis~~v------~~v~~~i~gD~~~~~~~~~fD~Vvsn~~~-- 133 (290)
T 2xyq_A 62 PYNMRVIHFGAGSDKGVAPGTAVLRQWLPTGTLLVDSDLNDFV------SDADSTLIGDCATVHTANKWDLIISDMYD-- 133 (290)
T ss_dssp CTTCEEEEESCCCTTSBCHHHHHHHHHSCTTCEEEEEESSCCB------CSSSEEEESCGGGCCCSSCEEEEEECCCC--
T ss_pred CCCCEEEEeCCCCCCCCCcHHHHHHHHcCCCCEEEEEECCCCC------CCCEEEEECccccCCccCcccEEEEcCCc--
Confidence 34468999996 34 5678888875441 47899 99999873 333 6887221100
Q ss_pred hhHHhhhhhhhhcCCCccchhhhhhcccccceeeeeeccC-ChHHHHHHHHHHHHHhccCC-------ccCCHHHHHHHH
Q 036440 86 IKIMIAFFIRLVVGRGRLHIFSWLNFMKRVINMQIIIHVF-GDEESVKILKICREAITSKA-------KLSTEKELESLF 157 (181)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~iLHdw-~D~~~~~iL~~~~~a~~~~g-------~eRt~~E~~~Ll 157 (181)
.+.+ .+.+.+. ..+-..++|+.++..++||| .....+++..++
T Consensus 134 ---------------------~~~g--------~~~~d~~~~~~l~~~~l~~a~r~LkpGG~~v~~~~~~~~~~~l~~~l 184 (290)
T 2xyq_A 134 ---------------------PRTK--------HVTKENDSKEGFFTYLCGFIKQKLALGGSIAVKITEHSWNADLYKLM 184 (290)
T ss_dssp ---------------------CC-----------CCSCCCCCCTHHHHHHHHHHHHEEEEEEEEEEECSSSCCHHHHHHH
T ss_pred ---------------------cccc--------cccccccchHHHHHHHHHHHHHhcCCCcEEEEEEeccCCHHHHHHHH
Confidence 0000 0000000 12334589999999999999 334456999999
Q ss_pred HhCCCeEEEEE
Q 036440 158 VEVHFHHYKIT 168 (181)
Q Consensus 158 ~~aGf~~~~i~ 168 (181)
++.||..+++.
T Consensus 185 ~~~GF~~v~~~ 195 (290)
T 2xyq_A 185 GHFSWWTAFVT 195 (290)
T ss_dssp TTEEEEEEEEE
T ss_pred HHcCCcEEEEE
Confidence 99999988776
|
| >1p91_A Ribosomal RNA large subunit methyltransferase A; RLMA, RRMA, 23S rRNA, NESG, structural genomics, PSI, protein structure initiative; HET: SAM; 2.80A {Escherichia coli} SCOP: c.66.1.33 | Back alignment and structure |
|---|
Probab=93.17 E-value=0.34 Score=38.60 Aligned_cols=52 Identities=12% Similarity=0.253 Sum_probs=37.8
Q ss_pred cCCCeEEEec------------CCCCceEEEeec-hhhhhhhcc-CCCceEEecCCCC-CCCC--cceE
Q 036440 26 ERLGSLVDVG------------AFPCVKCTEFDQ-PHVVANLLD-TNNLKYLADDFFQ-SIPP--VCMI 77 (181)
Q Consensus 26 ~~~~~lvDvG------------~~P~l~~~~~Dl-P~Vv~~a~~-~~ri~~~~gDff~-~~P~--~d~~ 77 (181)
..-.+|+|+| ++|+.+.+.+|. |..++.+.. .+++.+..+|+.+ +++. .|++
T Consensus 84 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~d~~~~~~~~~~fD~v 152 (269)
T 1p91_A 84 DKATAVLDIGCGEGYYTHAFADALPEITTFGLDVSKVAIKAAAKRYPQVTFCVASSHRLPFSDTSMDAI 152 (269)
T ss_dssp TTCCEEEEETCTTSTTHHHHHHTCTTSEEEEEESCHHHHHHHHHHCTTSEEEECCTTSCSBCTTCEEEE
T ss_pred CCCCEEEEECCCCCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHhCCCcEEEEcchhhCCCCCCceeEE
Confidence 3457899999 568889999998 555665543 5688999999875 2332 5777
|
| >2b2c_A Spermidine synthase; beta-alpha, transferase; 2.50A {Caenorhabditis elegans} SCOP: c.66.1.17 | Back alignment and structure |
|---|
Probab=92.98 E-value=0.14 Score=43.72 Aligned_cols=52 Identities=15% Similarity=0.119 Sum_probs=38.1
Q ss_pred cCCCeEEEec-----------C-CCCceEEEeec-hhhhhhhcc----------CCCceEEecCCCCCC---CC-cceE
Q 036440 26 ERLGSLVDVG-----------A-FPCVKCTEFDQ-PHVVANLLD----------TNNLKYLADDFFQSI---PP-VCMI 77 (181)
Q Consensus 26 ~~~~~lvDvG-----------~-~P~l~~~~~Dl-P~Vv~~a~~----------~~ri~~~~gDff~~~---P~-~d~~ 77 (181)
....+|+||| + .|..+.+.+|+ |.+++.++. .+|++++.+|.++.+ +. .|++
T Consensus 107 ~~~~~VLdIG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~Ar~~~~~~~~~~~~~rv~~~~~D~~~~l~~~~~~fD~I 185 (314)
T 2b2c_A 107 PDPKRVLIIGGGDGGILREVLKHESVEKVTMCEIDEMVIDVAKKFLPGMSCGFSHPKLDLFCGDGFEFLKNHKNEFDVI 185 (314)
T ss_dssp SSCCEEEEESCTTSHHHHHHTTCTTCCEEEEECSCHHHHHHHHHHCTTTSGGGGCTTEEEECSCHHHHHHHCTTCEEEE
T ss_pred CCCCEEEEEcCCcCHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHHhccccCCCCEEEEEChHHHHHHhcCCCceEE
Confidence 3557999999 3 46789999998 677765531 468999999987643 22 5777
|
| >1o9g_A RRNA methyltransferase; antibiotic resistance, Se-MAD; 1.5A {Streptomyces viridochromogenes} SCOP: c.66.1.29 PDB: 1o9h_A | Back alignment and structure |
|---|
Probab=92.96 E-value=0.15 Score=40.62 Aligned_cols=19 Identities=16% Similarity=0.256 Sum_probs=17.1
Q ss_pred hHHHHHHHHHHHHHhccCC
Q 036440 127 DEESVKILKICREAITSKA 145 (181)
Q Consensus 127 D~~~~~iL~~~~~a~~~~g 145 (181)
.+...+++++++..++|||
T Consensus 190 ~~~~~~~l~~~~~~LkpgG 208 (250)
T 1o9g_A 190 GQPVAGLLRSLASALPAHA 208 (250)
T ss_dssp HHHHHHHHHHHHHHSCTTC
T ss_pred ccHHHHHHHHHHHhcCCCc
Confidence 4777899999999999999
|
| >1zq9_A Probable dimethyladenosine transferase; SGC, structural genomics, structural genomics consortium; HET: SAM; 1.90A {Homo sapiens} SCOP: c.66.1.24 | Back alignment and structure |
|---|
Probab=92.87 E-value=0.19 Score=41.74 Aligned_cols=67 Identities=19% Similarity=0.298 Sum_probs=44.4
Q ss_pred HHHHHHhhhhhcCCCeEEEecCC----------CCceEEEeec-hhhhhhhcc-------CCCceEEecCCCC-CCCCcc
Q 036440 15 SLALKYCKQIFERLGSLVDVGAF----------PCVKCTEFDQ-PHVVANLLD-------TNNLKYLADDFFQ-SIPPVC 75 (181)
Q Consensus 15 ~~~l~~~~~d~~~~~~lvDvG~~----------P~l~~~~~Dl-P~Vv~~a~~-------~~ri~~~~gDff~-~~P~~d 75 (181)
..+++.. +...-.+|||+|.- -..+.+.+|+ |..++.+.. .++++++.+|+.+ ++|..|
T Consensus 18 ~~i~~~~--~~~~~~~VLDiG~G~G~lt~~L~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~D~~~~~~~~fD 95 (285)
T 1zq9_A 18 NSIIDKA--ALRPTDVVLEVGPGTGNMTVKLLEKAKKVVACELDPRLVAELHKRVQGTPVASKLQVLVGDVLKTDLPFFD 95 (285)
T ss_dssp HHHHHHT--CCCTTCEEEEECCTTSTTHHHHHHHSSEEEEEESCHHHHHHHHHHHTTSTTGGGEEEEESCTTTSCCCCCS
T ss_pred HHHHHhc--CCCCCCEEEEEcCcccHHHHHHHhhCCEEEEEECCHHHHHHHHHHHHhcCCCCceEEEEcceecccchhhc
Confidence 5666666 56666899999911 1236788887 555554432 2589999999986 466678
Q ss_pred eEeccccc
Q 036440 76 MIPLRLGY 83 (181)
Q Consensus 76 ~~~~~~~~ 83 (181)
.+..++-|
T Consensus 96 ~vv~nlpy 103 (285)
T 1zq9_A 96 TCVANLPY 103 (285)
T ss_dssp EEEEECCG
T ss_pred EEEEecCc
Confidence 77444443
|
| >3r0q_C Probable protein arginine N-methyltransferase 4.2; arginine methyltransferase, methylation; HET: SAH; 2.61A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=92.86 E-value=0.18 Score=43.56 Aligned_cols=81 Identities=10% Similarity=0.035 Sum_probs=55.7
Q ss_pred cCCCeEEEec-----------CCCCceEEEeechhhhhhhc-------cCCCceEEecCCCCC-CCC-cceEeccccchh
Q 036440 26 ERLGSLVDVG-----------AFPCVKCTEFDQPHVVANLL-------DTNNLKYLADDFFQS-IPP-VCMIPLRLGYSH 85 (181)
Q Consensus 26 ~~~~~lvDvG-----------~~P~l~~~~~DlP~Vv~~a~-------~~~ri~~~~gDff~~-~P~-~d~~~~~~~~~~ 85 (181)
..-.+||||| +....+.+.+|....++.+. ..++|+++.+|+.+- +|. .|++
T Consensus 62 ~~~~~VLDlGcGtG~ls~~la~~g~~~V~gvD~s~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~D~I-------- 133 (376)
T 3r0q_C 62 FEGKTVLDVGTGSGILAIWSAQAGARKVYAVEATKMADHARALVKANNLDHIVEVIEGSVEDISLPEKVDVI-------- 133 (376)
T ss_dssp TTTCEEEEESCTTTHHHHHHHHTTCSEEEEEESSTTHHHHHHHHHHTTCTTTEEEEESCGGGCCCSSCEEEE--------
T ss_pred CCCCEEEEeccCcCHHHHHHHhcCCCEEEEEccHHHHHHHHHHHHHcCCCCeEEEEECchhhcCcCCcceEE--------
Confidence 3447899999 33334889999876555443 257899999999863 443 6887
Q ss_pred hhHHhhhhhhhhcCCCccchhhhhhcccccceeeeeeccCChH-HHHHHHHHHHHHhccCC
Q 036440 86 IKIMIAFFIRLVVGRGRLHIFSWLNFMKRVINMQIIIHVFGDE-ESVKILKICREAITSKA 145 (181)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~iLHdw~D~-~~~~iL~~~~~a~~~~g 145 (181)
+...+.|-...+ .-..+|+.+...++|||
T Consensus 134 -------------------------------v~~~~~~~l~~e~~~~~~l~~~~~~LkpgG 163 (376)
T 3r0q_C 134 -------------------------------ISEWMGYFLLRESMFDSVISARDRWLKPTG 163 (376)
T ss_dssp -------------------------------EECCCBTTBTTTCTHHHHHHHHHHHEEEEE
T ss_pred -------------------------------EEcChhhcccchHHHHHHHHHHHhhCCCCe
Confidence 444434443333 34568999999999999
|
| >1sui_A Caffeoyl-COA O-methyltransferase; rossmann fold, protein-cofactor-substrate complex; HET: SAH FRE; 2.70A {Medicago sativa} SCOP: c.66.1.1 PDB: 1sus_A* | Back alignment and structure |
|---|
Probab=92.60 E-value=0.11 Score=42.17 Aligned_cols=46 Identities=13% Similarity=0.125 Sum_probs=34.9
Q ss_pred hcCCCeEEEec------------CCC-CceEEEeec-hhhhhhhc-------cCCCceEEecCCCCC
Q 036440 25 FERLGSLVDVG------------AFP-CVKCTEFDQ-PHVVANLL-------DTNNLKYLADDFFQS 70 (181)
Q Consensus 25 ~~~~~~lvDvG------------~~P-~l~~~~~Dl-P~Vv~~a~-------~~~ri~~~~gDff~~ 70 (181)
.....++|||| ++| +.+.+.+|. |..++.+. ..++|+++.+|..+.
T Consensus 77 ~~~~~~VLeiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~i~~~~gda~~~ 143 (247)
T 1sui_A 77 LINAKNTMEIGVYTGYSLLATALAIPEDGKILAMDINKENYELGLPVIKKAGVDHKIDFREGPALPV 143 (247)
T ss_dssp HTTCCEEEEECCGGGHHHHHHHHHSCTTCEEEEEESCCHHHHHHHHHHHHTTCGGGEEEEESCHHHH
T ss_pred hhCcCEEEEeCCCcCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCCeEEEECCHHHH
Confidence 44668999999 566 789999998 56665543 246899999998764
|
| >3k6r_A Putative transferase PH0793; structural genomics, PSI structure initiative, midwest center for structural genomic unknown function; 2.10A {Pyrococcus horikoshii} PDB: 3a25_A* 3a26_A* | Back alignment and structure |
|---|
Probab=92.35 E-value=0.35 Score=40.95 Aligned_cols=58 Identities=12% Similarity=-0.009 Sum_probs=41.3
Q ss_pred hcCCCeEEEec-----------CCCCceEEEeec-hhhhhhhc-------cCCCceEEecCCCCCCCC--cceEecccc
Q 036440 25 FERLGSLVDVG-----------AFPCVKCTEFDQ-PHVVANLL-------DTNNLKYLADDFFQSIPP--VCMIPLRLG 82 (181)
Q Consensus 25 ~~~~~~lvDvG-----------~~P~l~~~~~Dl-P~Vv~~a~-------~~~ri~~~~gDff~~~P~--~d~~~~~~~ 82 (181)
++.-.+|+|+| +....+.+.+|+ |..++.+. ..++++...+|.++-.+. +|.+.|++.
T Consensus 123 ~~~g~~VlD~~aG~G~~~i~~a~~g~~~V~avD~np~a~~~~~~N~~~N~v~~~v~~~~~D~~~~~~~~~~D~Vi~~~p 201 (278)
T 3k6r_A 123 AKPDELVVDMFAGIGHLSLPIAVYGKAKVIAIEKDPYTFKFLVENIHLNKVEDRMSAYNMDNRDFPGENIADRILMGYV 201 (278)
T ss_dssp CCTTCEEEETTCTTTTTTHHHHHHTCCEEEEECCCHHHHHHHHHHHHHTTCTTTEEEECSCTTTCCCCSCEEEEEECCC
T ss_pred cCCCCEEEEecCcCcHHHHHHHHhcCCeEEEEECCHHHHHHHHHHHHHcCCCCcEEEEeCcHHHhccccCCCEEEECCC
Confidence 34567999999 345567899998 56655443 378999999999875443 687755554
|
| >3p9n_A Possible methyltransferase (methylase); RV2966C, adoMet binding, RNA methylase, RSMD, SAM-fold, RNA methyltransferase; 1.90A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=92.21 E-value=0.68 Score=34.98 Aligned_cols=79 Identities=8% Similarity=-0.053 Sum_probs=57.2
Q ss_pred CCCeEEEec-----------CCCCceEEEeec-hhhhhhhcc------CCCceEEecCCCCC---CC--CcceEeccccc
Q 036440 27 RLGSLVDVG-----------AFPCVKCTEFDQ-PHVVANLLD------TNNLKYLADDFFQS---IP--PVCMIPLRLGY 83 (181)
Q Consensus 27 ~~~~lvDvG-----------~~P~l~~~~~Dl-P~Vv~~a~~------~~ri~~~~gDff~~---~P--~~d~~~~~~~~ 83 (181)
.-.+++|+| +.+..+.+.+|+ |..++.+.. .++++++.+|+.+. .+ ..|++
T Consensus 44 ~~~~vLDlgcG~G~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~fD~i------ 117 (189)
T 3p9n_A 44 TGLAVLDLYAGSGALGLEALSRGAASVLFVESDQRSAAVIARNIEALGLSGATLRRGAVAAVVAAGTTSPVDLV------ 117 (189)
T ss_dssp TTCEEEEETCTTCHHHHHHHHTTCSEEEEEECCHHHHHHHHHHHHHHTCSCEEEEESCHHHHHHHCCSSCCSEE------
T ss_pred CCCEEEEeCCCcCHHHHHHHHCCCCeEEEEECCHHHHHHHHHHHHHcCCCceEEEEccHHHHHhhccCCCccEE------
Confidence 457899999 456668999998 666665542 26899999998763 22 26877
Q ss_pred hhhhHHhhhhhhhhcCCCccchhhhhhcccccceeeeeeccCChHHHHHHHHHHHH--HhccCC
Q 036440 84 SHIKIMIAFFIRLVVGRGRLHIFSWLNFMKRVINMQIIIHVFGDEESVKILKICRE--AITSKA 145 (181)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~iLHdw~D~~~~~iL~~~~~--a~~~~g 145 (181)
++.-..| +..+...++|+.+.. .++|||
T Consensus 118 ---------------------------------~~~~p~~-~~~~~~~~~l~~~~~~~~L~pgG 147 (189)
T 3p9n_A 118 ---------------------------------LADPPYN-VDSADVDAILAALGTNGWTREGT 147 (189)
T ss_dssp ---------------------------------EECCCTT-SCHHHHHHHHHHHHHSSSCCTTC
T ss_pred ---------------------------------EECCCCC-cchhhHHHHHHHHHhcCccCCCe
Confidence 4443333 345777889999988 999999
|
| >1uir_A Polyamine aminopropyltransferase; spermidien synthase, spermine synthase, riken STR genomics/proteomics initiative, RSGI; 2.00A {Thermus thermophilus} SCOP: c.66.1.17 PDB: 3anx_A* | Back alignment and structure |
|---|
Probab=92.10 E-value=0.23 Score=41.94 Aligned_cols=102 Identities=11% Similarity=0.065 Sum_probs=66.2
Q ss_pred CCCeEEEec-----------CC-CCceEEEeec-hhhhhhhcc-----------CCCceEEecCCCCCC---CC-cceEe
Q 036440 27 RLGSLVDVG-----------AF-PCVKCTEFDQ-PHVVANLLD-----------TNNLKYLADDFFQSI---PP-VCMIP 78 (181)
Q Consensus 27 ~~~~lvDvG-----------~~-P~l~~~~~Dl-P~Vv~~a~~-----------~~ri~~~~gDff~~~---P~-~d~~~ 78 (181)
...+||||| ++ |..+.+.+|+ |.+++.++. .+|++++.+|..+.+ +. .|++
T Consensus 77 ~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~ar~~~~~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fD~I- 155 (314)
T 1uir_A 77 EPKRVLIVGGGEGATLREVLKHPTVEKAVMVDIDGELVEVAKRHMPEWHQGAFDDPRAVLVIDDARAYLERTEERYDVV- 155 (314)
T ss_dssp CCCEEEEEECTTSHHHHHHTTSTTCCEEEEEESCHHHHHHHHHHCHHHHTTGGGCTTEEEEESCHHHHHHHCCCCEEEE-
T ss_pred CCCeEEEEcCCcCHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHhHhhccccccCCceEEEEchHHHHHHhcCCCccEE-
Confidence 557999999 44 6779999998 667665431 479999999987632 22 5877
Q ss_pred ccccchhhhHHhhhhhhhhcCCCccchhhhhhcccccceeeeeeccC--Ch-HH--HHHHHHHHHHHhccCC--------
Q 036440 79 LRLGYSHIKIMIAFFIRLVVGRGRLHIFSWLNFMKRVINMQIIIHVF--GD-EE--SVKILKICREAITSKA-------- 145 (181)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~iLHdw--~D-~~--~~~iL~~~~~a~~~~g-------- 145 (181)
++....|.. .. +. ..+.+++++..++|||
T Consensus 156 --------------------------------------i~d~~~~~~~~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~~~ 197 (314)
T 1uir_A 156 --------------------------------------IIDLTDPVGEDNPARLLYTVEFYRLVKAHLNPGGVMGMQTGM 197 (314)
T ss_dssp --------------------------------------EEECCCCBSTTCGGGGGSSHHHHHHHHHTEEEEEEEEEEEEE
T ss_pred --------------------------------------EECCCCcccccCcchhccHHHHHHHHHHhcCCCcEEEEEccC
Confidence 444333321 11 11 3688999999999999
Q ss_pred c----cCCHHHHHHHHHhCCCeEEEEE
Q 036440 146 K----LSTEKELESLFVEVHFHHYKIT 168 (181)
Q Consensus 146 ~----eRt~~E~~~Ll~~aGf~~~~i~ 168 (181)
. ....++..+.++++ |..+...
T Consensus 198 ~~~~~~~~~~~~~~~l~~~-F~~v~~~ 223 (314)
T 1uir_A 198 ILLTHHRVHPVVHRTVREA-FRYVRSY 223 (314)
T ss_dssp ECC---CHHHHHHHHHHTT-CSEEEEE
T ss_pred ccccCHHHHHHHHHHHHHH-CCceEEE
Confidence 1 12244555666666 6666543
|
| >2fhp_A Methylase, putative; alpha-beta-alpha sandwich, structural genomics, PSI, protein structure initiative; HET: MSE; 1.60A {Enterococcus faecalis} SCOP: c.66.1.46 | Back alignment and structure |
|---|
Probab=92.04 E-value=0.096 Score=39.00 Aligned_cols=44 Identities=9% Similarity=-0.003 Sum_probs=34.1
Q ss_pred CCCeEEEec-----------CCCCceEEEeec-hhhhhhhcc-------CCCceEEecCCCCC
Q 036440 27 RLGSLVDVG-----------AFPCVKCTEFDQ-PHVVANLLD-------TNNLKYLADDFFQS 70 (181)
Q Consensus 27 ~~~~lvDvG-----------~~P~l~~~~~Dl-P~Vv~~a~~-------~~ri~~~~gDff~~ 70 (181)
.-.+|+|+| +.+..+.+.+|. |..++.+.. .++++++.+|+.+.
T Consensus 44 ~~~~vLD~GcG~G~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~ 106 (187)
T 2fhp_A 44 DGGMALDLYSGSGGLAIEAVSRGMDKSICIEKNFAALKVIKENIAITKEPEKFEVRKMDANRA 106 (187)
T ss_dssp SSCEEEETTCTTCHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHH
T ss_pred CCCCEEEeCCccCHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHHHhCCCcceEEEECcHHHH
Confidence 457999999 556678999998 667665542 36899999999874
|
| >2ih2_A Modification methylase TAQI; DNA, DNA methyltransferase, target base partner, 5-methylpyr 2(1H)-ONE, base flipping; HET: 5PY 6MA NEA; 1.61A {Thermus aquaticus} SCOP: c.66.1.27 d.287.1.1 PDB: 2ibs_A* 2ibt_A* 2ih4_A* 2ih5_A* 2jg3_A* 2np6_A* 2np7_A* 1aqj_A* 1aqi_A* 2adm_A* 1g38_A* | Back alignment and structure |
|---|
Probab=91.90 E-value=0.79 Score=38.99 Aligned_cols=120 Identities=12% Similarity=0.051 Sum_probs=66.2
Q ss_pred CCCeEEEec------------CC-CCceEEEeec-hhhhhhhccCCCceEEecCCCCCCCC--cceEeccccchhhhHHh
Q 036440 27 RLGSLVDVG------------AF-PCVKCTEFDQ-PHVVANLLDTNNLKYLADDFFQSIPP--VCMIPLRLGYSHIKIMI 90 (181)
Q Consensus 27 ~~~~lvDvG------------~~-P~l~~~~~Dl-P~Vv~~a~~~~ri~~~~gDff~~~P~--~d~~~~~~~~~~~~~~~ 90 (181)
.-.+|+|+| ++ +..+.+.+|+ |..++.+ .+++++.+|+++..+. .|++..+-=|......
T Consensus 39 ~~~~vLD~gcGtG~~~~~~~~~~~~~~~i~gvDi~~~~~~~a---~~~~~~~~D~~~~~~~~~fD~Ii~NPPy~~~~~~- 114 (421)
T 2ih2_A 39 RGGRVLEPACAHGPFLRAFREAHGTAYRFVGVEIDPKALDLP---PWAEGILADFLLWEPGEAFDLILGNPPYGIVGEA- 114 (421)
T ss_dssp TTCEEEEETCTTCHHHHHHHHHHCSCSEEEEEESCTTTCCCC---TTEEEEESCGGGCCCSSCEEEEEECCCCCCBSCT-
T ss_pred CCCEEEECCCCChHHHHHHHHHhCCCCeEEEEECCHHHHHhC---CCCcEEeCChhhcCccCCCCEEEECcCccCcccc-
Confidence 346999999 33 7788999998 4555544 7899999999975443 6888443221100000
Q ss_pred hhhhhhhcCCCccch-hhhhhcccccceeeeeeccCChHHHHHHHHHHHHHhccCC-----------ccCCHHHHHHHHH
Q 036440 91 AFFIRLVVGRGRLHI-FSWLNFMKRVINMQIIIHVFGDEESVKILKICREAITSKA-----------KLSTEKELESLFV 158 (181)
Q Consensus 91 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~iLHdw~D~~~~~iL~~~~~a~~~~g-----------~eRt~~E~~~Ll~ 158 (181)
+.-..|. .......+.. . ..+ +-.-+-...+++.+...++++| ...+.+++++++.
T Consensus 115 --------~~~~~~~~~~~~~~~~~~--~-~~~-~~~~~~~~~fl~~~~~~Lk~~G~~~~i~p~~~l~~~~~~~lr~~l~ 182 (421)
T 2ih2_A 115 --------SKYPIHVFKAVKDLYKKA--F-STW-KGKYNLYGAFLEKAVRLLKPGGVLVFVVPATWLVLEDFALLREFLA 182 (421)
T ss_dssp --------TTCSBCCCHHHHHHHHHH--C-TTC-CTTCCHHHHHHHHHHHHEEEEEEEEEEEEGGGGTCGGGHHHHHHHH
T ss_pred --------cccccccCHHHHHHHHHh--h-hcc-cCCccHHHHHHHHHHHHhCCCCEEEEEEChHHhcCccHHHHHHHHH
Confidence 0000000 0000000000 0 000 0001123367999999999999 1235688999999
Q ss_pred hCCC
Q 036440 159 EVHF 162 (181)
Q Consensus 159 ~aGf 162 (181)
+.|+
T Consensus 183 ~~~~ 186 (421)
T 2ih2_A 183 REGK 186 (421)
T ss_dssp HHSE
T ss_pred hcCC
Confidence 9998
|
| >1ws6_A Methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.50A {Thermus thermophilus} SCOP: c.66.1.46 | Back alignment and structure |
|---|
Probab=91.40 E-value=0.18 Score=36.83 Aligned_cols=49 Identities=16% Similarity=0.068 Sum_probs=34.5
Q ss_pred CCCeEEEec------------CCCCceEEEeec-hhhhhhhcc-----CCCceEEecCCCCCCC-------CcceE
Q 036440 27 RLGSLVDVG------------AFPCVKCTEFDQ-PHVVANLLD-----TNNLKYLADDFFQSIP-------PVCMI 77 (181)
Q Consensus 27 ~~~~lvDvG------------~~P~l~~~~~Dl-P~Vv~~a~~-----~~ri~~~~gDff~~~P-------~~d~~ 77 (181)
.-.+++|+| ..|. .+.+|. |..++.+.. .-+++++.+|+.+..| ..|++
T Consensus 41 ~~~~vLD~GcG~G~~~~~l~~~~~~--v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~D~i 114 (171)
T 1ws6_A 41 RRGRFLDPFAGSGAVGLEAASEGWE--AVLVEKDPEAVRLLKENVRRTGLGARVVALPVEVFLPEAKAQGERFTVA 114 (171)
T ss_dssp TCCEEEEETCSSCHHHHHHHHTTCE--EEEECCCHHHHHHHHHHHHHHTCCCEEECSCHHHHHHHHHHTTCCEEEE
T ss_pred CCCeEEEeCCCcCHHHHHHHHCCCe--EEEEeCCHHHHHHHHHHHHHcCCceEEEeccHHHHHHhhhccCCceEEE
Confidence 557999999 4444 888998 666665542 1289999999886433 35777
|
| >3cbg_A O-methyltransferase; cyanobacterium; HET: SAH FER 4FE; 2.00A {Synechocystis SP} | Back alignment and structure |
|---|
Probab=91.30 E-value=0.18 Score=40.13 Aligned_cols=45 Identities=13% Similarity=0.203 Sum_probs=33.7
Q ss_pred hcCCCeEEEec------------CCC-CceEEEeec-hhhhhhhc-------cCCCceEEecCCCC
Q 036440 25 FERLGSLVDVG------------AFP-CVKCTEFDQ-PHVVANLL-------DTNNLKYLADDFFQ 69 (181)
Q Consensus 25 ~~~~~~lvDvG------------~~P-~l~~~~~Dl-P~Vv~~a~-------~~~ri~~~~gDff~ 69 (181)
.....++||+| ++| +.+.+.+|. |..++.+. ..++|+++.+|..+
T Consensus 70 ~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~~d~~~ 135 (232)
T 3cbg_A 70 LTGAKQVLEIGVFRGYSALAMALQLPPDGQIIACDQDPNATAIAKKYWQKAGVAEKISLRLGPALA 135 (232)
T ss_dssp HHTCCEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHH
T ss_pred hcCCCEEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHH
Confidence 34567999999 566 678999998 55555443 24689999999865
|
| >2esr_A Methyltransferase; structural genomics, hypothetical protein, streptococcus PYO PSI, protein structure initiative; HET: GLC; 1.80A {Streptococcus pyogenes} SCOP: c.66.1.46 | Back alignment and structure |
|---|
Probab=91.26 E-value=0.067 Score=39.95 Aligned_cols=62 Identities=11% Similarity=0.081 Sum_probs=41.7
Q ss_pred HHHHHHhhhhhcCCCeEEEec-----------CCCCceEEEeec-hhhhhhhcc-------CCCceEEecCCCCCCC---
Q 036440 15 SLALKYCKQIFERLGSLVDVG-----------AFPCVKCTEFDQ-PHVVANLLD-------TNNLKYLADDFFQSIP--- 72 (181)
Q Consensus 15 ~~~l~~~~~d~~~~~~lvDvG-----------~~P~l~~~~~Dl-P~Vv~~a~~-------~~ri~~~~gDff~~~P--- 72 (181)
..+++... ....-.+|+|+| +.+..+.+.+|+ |..++.+.. .++++++.+|+.+.+|
T Consensus 20 ~~~~~~l~-~~~~~~~vLDlGcG~G~~~~~l~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~ 98 (177)
T 2esr_A 20 GAIFNMIG-PYFNGGRVLDLFAGSGGLAIEAVSRGMSAAVLVEKNRKAQAIIQDNIIMTKAENRFTLLKMEAERAIDCLT 98 (177)
T ss_dssp HHHHHHHC-SCCCSCEEEEETCTTCHHHHHHHHTTCCEEEEECCCHHHHHHHHHHHHTTTCGGGEEEECSCHHHHHHHBC
T ss_pred HHHHHHHH-hhcCCCeEEEeCCCCCHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHHHcCCCCceEEEECcHHHhHHhhc
Confidence 34444442 144567999999 446678999998 667665542 3589999999986322
Q ss_pred C-cceE
Q 036440 73 P-VCMI 77 (181)
Q Consensus 73 ~-~d~~ 77 (181)
. .|++
T Consensus 99 ~~fD~i 104 (177)
T 2esr_A 99 GRFDLV 104 (177)
T ss_dssp SCEEEE
T ss_pred CCCCEE
Confidence 2 5777
|
| >3frh_A 16S rRNA methylase; methyltransferase domain, helical N-terminal domain, methyltransferase, plasmid, transferase; HET: SAH; 1.20A {Escherichia coli} PDB: 3fri_A* 3b89_A* | Back alignment and structure |
|---|
Probab=91.20 E-value=0.69 Score=39.42 Aligned_cols=80 Identities=8% Similarity=0.081 Sum_probs=61.0
Q ss_pred cCCCeEEEec---------CCCCceEEEeech-hhhhhhc-----cCCCceEEecCCCCCCCC--cceEeccccchhhhH
Q 036440 26 ERLGSLVDVG---------AFPCVKCTEFDQP-HVVANLL-----DTNNLKYLADDFFQSIPP--VCMIPLRLGYSHIKI 88 (181)
Q Consensus 26 ~~~~~lvDvG---------~~P~l~~~~~DlP-~Vv~~a~-----~~~ri~~~~gDff~~~P~--~d~~~~~~~~~~~~~ 88 (181)
....+|+|+| ..|..+.+..|+- ..++.+. ...+.++...|+....|+ +|++
T Consensus 104 ~~p~~VLDlGCG~gpLal~~~~~~~y~a~DId~~~i~~ar~~~~~~g~~~~~~v~D~~~~~~~~~~Dvv----------- 172 (253)
T 3frh_A 104 ETPRRVLDIACGLNPLALYERGIASVWGCDIHQGLGDVITPFAREKDWDFTFALQDVLCAPPAEAGDLA----------- 172 (253)
T ss_dssp CCCSEEEEETCTTTHHHHHHTTCSEEEEEESBHHHHHHHHHHHHHTTCEEEEEECCTTTSCCCCBCSEE-----------
T ss_pred CCCCeEEEecCCccHHHHHhccCCeEEEEeCCHHHHHHHHHHHHhcCCCceEEEeecccCCCCCCcchH-----------
Confidence 4568999999 2389999999994 4555443 257889999999976544 7998
Q ss_pred HhhhhhhhhcCCCccchhhhhhcccccceeeeeeccCChHHHHHHHHHHHHHhccCC
Q 036440 89 MIAFFIRLVVGRGRLHIFSWLNFMKRVINMQIIIHVFGDEESVKILKICREAITSKA 145 (181)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~iLHdw~D~~~~~iL~~~~~a~~~~g 145 (181)
++--++|...+++....+ ++..++.+++
T Consensus 173 ----------------------------Lllk~lh~LE~q~~~~~~-~ll~aL~~~~ 200 (253)
T 3frh_A 173 ----------------------------LIFKLLPLLEREQAGSAM-ALLQSLNTPR 200 (253)
T ss_dssp ----------------------------EEESCHHHHHHHSTTHHH-HHHHHCBCSE
T ss_pred ----------------------------HHHHHHHHhhhhchhhHH-HHHHHhcCCC
Confidence 777778887777777777 7777999887
|
| >3dxy_A TRNA (guanine-N(7)-)-methyltransferase; rossmann fold methyltransferase, tRNA modification, S-adenosyl-L-methionine, TR processing; HET: SAM; 1.50A {Escherichia coli} PDB: 3dxx_A* 3dxz_A* | Back alignment and structure |
|---|
Probab=91.15 E-value=0.15 Score=40.66 Aligned_cols=44 Identities=16% Similarity=0.203 Sum_probs=33.3
Q ss_pred CCCeEEEec------------CCCCceEEEeec-hhhhhhhcc------CCCceEEecCCCCC
Q 036440 27 RLGSLVDVG------------AFPCVKCTEFDQ-PHVVANLLD------TNNLKYLADDFFQS 70 (181)
Q Consensus 27 ~~~~lvDvG------------~~P~l~~~~~Dl-P~Vv~~a~~------~~ri~~~~gDff~~ 70 (181)
.-.++|||| ++|+.+.+.+|. |..++.+.. ..+++++.+|..+.
T Consensus 34 ~~~~vLDiGcG~G~~~~~lA~~~p~~~v~giD~s~~~l~~a~~~~~~~~l~nv~~~~~Da~~~ 96 (218)
T 3dxy_A 34 EAPVTLEIGFGMGASLVAMAKDRPEQDFLGIEVHSPGVGACLASAHEEGLSNLRVMCHDAVEV 96 (218)
T ss_dssp CCCEEEEESCTTCHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHTTCSSEEEECSCHHHH
T ss_pred CCCeEEEEeeeChHHHHHHHHHCCCCeEEEEEecHHHHHHHHHHHHHhCCCcEEEEECCHHHH
Confidence 347899999 789999999998 555554431 35799999997653
|
| >2yxl_A PH0851 protein, 450AA long hypothetical FMU protein; FMU-homolog, methyltransferase, structural genomics, NPPSFA; HET: SFG; 2.55A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=91.14 E-value=0.54 Score=41.64 Aligned_cols=118 Identities=14% Similarity=0.090 Sum_probs=71.1
Q ss_pred hhcCCCeEEEec------------CCCC-ceEEEeech-hhhhhhcc------CCCceEEecCCCCC---CC-C-cceEe
Q 036440 24 IFERLGSLVDVG------------AFPC-VKCTEFDQP-HVVANLLD------TNNLKYLADDFFQS---IP-P-VCMIP 78 (181)
Q Consensus 24 d~~~~~~lvDvG------------~~P~-l~~~~~DlP-~Vv~~a~~------~~ri~~~~gDff~~---~P-~-~d~~~ 78 (181)
+...-.+|+|+| ..|+ .+.+.+|.- ..++.+.. ..+++++.+|+.+. ++ . .|.++
T Consensus 256 ~~~~g~~VLDlgaG~G~~t~~la~~~~~~~~v~a~D~s~~~l~~~~~~~~~~g~~~v~~~~~D~~~~~~~~~~~~fD~Vl 335 (450)
T 2yxl_A 256 DPKPGETVVDLAAAPGGKTTHLAELMKNKGKIYAFDVDKMRMKRLKDFVKRMGIKIVKPLVKDARKAPEIIGEEVADKVL 335 (450)
T ss_dssp CCCTTCEEEESSCTTCHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHTTCCSEEEECSCTTCCSSSSCSSCEEEEE
T ss_pred CCCCcCEEEEeCCCccHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHHHcCCCcEEEEEcChhhcchhhccCCCCEEE
Confidence 455557999999 3454 688999984 44443321 34799999998753 33 2 58886
Q ss_pred ccccchhhhHHhhhhhhhhcCCCccchhhhhhcccccceeeeeeccCChHHH-------HHHHHHHHHHhccCC------
Q 036440 79 LRLGYSHIKIMIAFFIRLVVGRGRLHIFSWLNFMKRVINMQIIIHVFGDEES-------VKILKICREAITSKA------ 145 (181)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~iLHdw~D~~~-------~~iL~~~~~a~~~~g------ 145 (181)
++.-+|+.-.. |. -.+.. +.|+.++. .++|+++...++|||
T Consensus 336 ~D~Pcsg~g~~-----~~------~pd~~---------------~~~~~~~~~~l~~~q~~iL~~a~~~LkpGG~lvy~t 389 (450)
T 2yxl_A 336 LDAPCTSSGTI-----GK------NPELR---------------WRLREDKINEMSQLQRELLESAARLVKPGGRLLYTT 389 (450)
T ss_dssp EECCCCCGGGT-----TT------STTHH---------------HHCCTTSHHHHHHHHHHHHHHHHTTEEEEEEEEEEE
T ss_pred EcCCCCCCeee-----cc------Chhhh---------------hhCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEe
Confidence 55433221100 00 00001 12233322 578999999999999
Q ss_pred ----ccCCHHHHHHHHHhC-CCeEEEE
Q 036440 146 ----KLSTEKELESLFVEV-HFHHYKI 167 (181)
Q Consensus 146 ----~eRt~~E~~~Ll~~a-Gf~~~~i 167 (181)
.+-.++....++++. ||+.+.+
T Consensus 390 cs~~~~ene~~v~~~l~~~~~~~~~~~ 416 (450)
T 2yxl_A 390 CSIFKEENEKNIRWFLNVHPEFKLVPL 416 (450)
T ss_dssp SCCCGGGTHHHHHHHHHHCSSCEECCC
T ss_pred CCCChhhHHHHHHHHHHhCCCCEEeec
Confidence 344566788888886 7887654
|
| >1vbf_A 231AA long hypothetical protein-L-isoaspartate O- methyltransferase; trimeric coiled coil assembly; 2.80A {Sulfolobus tokodaii} SCOP: c.66.1.7 | Back alignment and structure |
|---|
Probab=91.07 E-value=0.51 Score=36.57 Aligned_cols=60 Identities=12% Similarity=0.051 Sum_probs=39.6
Q ss_pred HHHHHhhhhhcCCCeEEEecCCC----------CceEEEeec-hhhhhhhcc----CCCceEEecCCCCCCCC---cceE
Q 036440 16 LALKYCKQIFERLGSLVDVGAFP----------CVKCTEFDQ-PHVVANLLD----TNNLKYLADDFFQSIPP---VCMI 77 (181)
Q Consensus 16 ~~l~~~~~d~~~~~~lvDvG~~P----------~l~~~~~Dl-P~Vv~~a~~----~~ri~~~~gDff~~~P~---~d~~ 77 (181)
.+++.. ....-.+|+|+|.-+ ..+.+.+|. |..++.+.. .++++++.+|+.+.+|. .|++
T Consensus 61 ~~~~~~--~~~~~~~vLdiG~G~G~~~~~l~~~~~~v~~vD~~~~~~~~a~~~~~~~~~v~~~~~d~~~~~~~~~~fD~v 138 (231)
T 1vbf_A 61 FMLDEL--DLHKGQKVLEIGTGIGYYTALIAEIVDKVVSVEINEKMYNYASKLLSYYNNIKLILGDGTLGYEEEKPYDRV 138 (231)
T ss_dssp HHHHHT--TCCTTCEEEEECCTTSHHHHHHHHHSSEEEEEESCHHHHHHHHHHHTTCSSEEEEESCGGGCCGGGCCEEEE
T ss_pred HHHHhc--CCCCCCEEEEEcCCCCHHHHHHHHHcCEEEEEeCCHHHHHHHHHHHhhcCCeEEEECCcccccccCCCccEE
Confidence 444555 455667999999111 157888887 566665542 22899999999875542 5777
|
| >1u2z_A Histone-lysine N-methyltransferase, H3 lysine-79 specific; histone methyltransferase, nucleosome; HET: SAH; 2.20A {Saccharomyces cerevisiae} SCOP: c.66.1.31 | Back alignment and structure |
|---|
Probab=90.80 E-value=0.77 Score=41.36 Aligned_cols=86 Identities=13% Similarity=0.191 Sum_probs=57.2
Q ss_pred HHHHHhhhhhcCCCeEEEec------------CCCCceEEEeechh-hhhhh-------c-------c-CCCceEEecCC
Q 036440 16 LALKYCKQIFERLGSLVDVG------------AFPCVKCTEFDQPH-VVANL-------L-------D-TNNLKYLADDF 67 (181)
Q Consensus 16 ~~l~~~~~d~~~~~~lvDvG------------~~P~l~~~~~DlP~-Vv~~a-------~-------~-~~ri~~~~gDf 67 (181)
.+++.. +...-.+|||+| .+|..+++.+|+-. .++.+ . . .++++++.+|-
T Consensus 233 ~ml~~l--~l~~g~~VLDLGCGsG~la~~LA~~~g~~~V~GVDis~~~l~~A~~Ml~~ar~~~~~~Gl~~~nV~~i~gD~ 310 (433)
T 1u2z_A 233 DVYQQC--QLKKGDTFMDLGSGVGNCVVQAALECGCALSFGCEIMDDASDLTILQYEELKKRCKLYGMRLNNVEFSLKKS 310 (433)
T ss_dssp HHHHHT--TCCTTCEEEEESCTTSHHHHHHHHHHCCSEEEEEECCHHHHHHHHHHHHHHHHHHHHTTBCCCCEEEEESSC
T ss_pred HHHHhc--CCCCCCEEEEeCCCcCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHhHHHHHHHHHHcCCCCCceEEEEcCc
Confidence 344554 455667999999 46878899999854 34433 2 1 26899988754
Q ss_pred C-CC--C----CCcceEeccccchhhhHHhhhhhhhhcCCCccchhhhhhcccccceeeeeeccCChHHHHHHHHHHHHH
Q 036440 68 F-QS--I----PPVCMIPLRLGYSHIKIMIAFFIRLVVGRGRLHIFSWLNFMKRVINMQIIIHVFGDEESVKILKICREA 140 (181)
Q Consensus 68 f-~~--~----P~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~iLHdw~D~~~~~iL~~~~~a 140 (181)
+ +. + ...|++ ++...++ . ++..+.|+.+...
T Consensus 311 ~~~~~~~~~~~~~FDvI---------------------------------------vvn~~l~--~-~d~~~~L~el~r~ 348 (433)
T 1u2z_A 311 FVDNNRVAELIPQCDVI---------------------------------------LVNNFLF--D-EDLNKKVEKILQT 348 (433)
T ss_dssp STTCHHHHHHGGGCSEE---------------------------------------EECCTTC--C-HHHHHHHHHHHTT
T ss_pred cccccccccccCCCCEE---------------------------------------EEeCccc--c-ccHHHHHHHHHHh
Confidence 4 32 1 236777 5555553 2 4555678999999
Q ss_pred hccCC
Q 036440 141 ITSKA 145 (181)
Q Consensus 141 ~~~~g 145 (181)
++|||
T Consensus 349 LKpGG 353 (433)
T 1u2z_A 349 AKVGC 353 (433)
T ss_dssp CCTTC
T ss_pred CCCCe
Confidence 99999
|
| >1dl5_A Protein-L-isoaspartate O-methyltransferase; isoaspartyl residues, protein repair, deamidation, post-translational modification; HET: SAH; 1.80A {Thermotoga maritima} SCOP: c.66.1.7 d.197.1.1 | Back alignment and structure |
|---|
Probab=90.47 E-value=0.44 Score=39.77 Aligned_cols=60 Identities=10% Similarity=0.195 Sum_probs=40.7
Q ss_pred HHHHHhhhhhcCCCeEEEec------------CCC-CceEEEeec-hhhhhhhcc------CCCceEEecCCCCCCCC--
Q 036440 16 LALKYCKQIFERLGSLVDVG------------AFP-CVKCTEFDQ-PHVVANLLD------TNNLKYLADDFFQSIPP-- 73 (181)
Q Consensus 16 ~~l~~~~~d~~~~~~lvDvG------------~~P-~l~~~~~Dl-P~Vv~~a~~------~~ri~~~~gDff~~~P~-- 73 (181)
.+++.. +...-.+|+|+| ..+ ..+.+.+|+ |..++.+.. .+++++..+|+.+..|.
T Consensus 66 ~l~~~l--~~~~~~~VLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~g~~~v~~~~~d~~~~~~~~~ 143 (317)
T 1dl5_A 66 LFMEWV--GLDKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVERLGIENVIFVCGDGYYGVPEFS 143 (317)
T ss_dssp HHHHHT--TCCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCGGGCCGGGC
T ss_pred HHHHhc--CCCCcCEEEEecCCchHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHHcCCCCeEEEECChhhccccCC
Confidence 444444 455667999999 445 467888997 566655532 24699999999875442
Q ss_pred -cceE
Q 036440 74 -VCMI 77 (181)
Q Consensus 74 -~d~~ 77 (181)
.|++
T Consensus 144 ~fD~I 148 (317)
T 1dl5_A 144 PYDVI 148 (317)
T ss_dssp CEEEE
T ss_pred CeEEE
Confidence 5887
|
| >2o07_A Spermidine synthase; structural genomics, structural genomics consortium, SGC, transferase; HET: SPD MTA; 1.89A {Homo sapiens} SCOP: c.66.1.17 PDB: 2o06_A* 2o05_A* 2o0l_A* 3rw9_A* | Back alignment and structure |
|---|
Probab=90.30 E-value=0.18 Score=42.59 Aligned_cols=52 Identities=12% Similarity=0.112 Sum_probs=38.0
Q ss_pred cCCCeEEEec------------CCCCceEEEeec-hhhhhhhc----------cCCCceEEecCCCCCC---CC-cceE
Q 036440 26 ERLGSLVDVG------------AFPCVKCTEFDQ-PHVVANLL----------DTNNLKYLADDFFQSI---PP-VCMI 77 (181)
Q Consensus 26 ~~~~~lvDvG------------~~P~l~~~~~Dl-P~Vv~~a~----------~~~ri~~~~gDff~~~---P~-~d~~ 77 (181)
....+|||+| .+|..+.+.+|+ |.+++.++ ..+|++++.+|.++.+ +. .|++
T Consensus 94 ~~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~ar~~~~~~~~~~~~~rv~v~~~Da~~~l~~~~~~fD~I 172 (304)
T 2o07_A 94 PNPRKVLIIGGGDGGVLREVVKHPSVESVVQCEIDEDVIQVSKKFLPGMAIGYSSSKLTLHVGDGFEFMKQNQDAFDVI 172 (304)
T ss_dssp SSCCEEEEEECTTSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHHHTCSSCEEEE
T ss_pred CCCCEEEEECCCchHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHhHHhhcccCCCcEEEEECcHHHHHhhCCCCceEE
Confidence 3557999999 346789999998 66766553 1579999999987532 22 5777
|
| >1sqg_A SUN protein, FMU protein; rossmann-fold, mixed beta sheet, methyltransferase-fold, RNA-binding domain; 1.65A {Escherichia coli} SCOP: a.79.1.3 c.66.1.38 PDB: 1sqf_A | Back alignment and structure |
|---|
Probab=89.91 E-value=0.6 Score=40.91 Aligned_cols=116 Identities=10% Similarity=0.062 Sum_probs=69.4
Q ss_pred hhcCCCeEEEec------------CCCCceEEEeec-hhhhhhhcc-----CCCceEEecCCCCC---CC--CcceEecc
Q 036440 24 IFERLGSLVDVG------------AFPCVKCTEFDQ-PHVVANLLD-----TNNLKYLADDFFQS---IP--PVCMIPLR 80 (181)
Q Consensus 24 d~~~~~~lvDvG------------~~P~l~~~~~Dl-P~Vv~~a~~-----~~ri~~~~gDff~~---~P--~~d~~~~~ 80 (181)
+...-.+|+|+| ..|..+.+.+|. |..++.+.. .-+++++.+|+.+. ++ ..|.++++
T Consensus 243 ~~~~g~~VLDlgaG~G~~t~~la~~~~~~~v~a~D~~~~~l~~~~~~~~~~g~~~~~~~~D~~~~~~~~~~~~fD~Vl~D 322 (429)
T 1sqg_A 243 APQNGEHILDLCAAPGGKTTHILEVAPEAQVVAVDIDEQRLSRVYDNLKRLGMKATVKQGDGRYPSQWCGEQQFDRILLD 322 (429)
T ss_dssp CCCTTCEEEEESCTTCHHHHHHHHHCTTCEEEEEESSTTTHHHHHHHHHHTTCCCEEEECCTTCTHHHHTTCCEEEEEEE
T ss_pred CCCCcCeEEEECCCchHHHHHHHHHcCCCEEEEECCCHHHHHHHHHHHHHcCCCeEEEeCchhhchhhcccCCCCEEEEe
Confidence 344557999999 456678899998 444443321 33588999998763 23 26888665
Q ss_pred ccchhhhHHhhhhhhhhcCCCccchhhhhhcccccceeeeeeccCChHHH-------HHHHHHHHHHhccCC--------
Q 036440 81 LGYSHIKIMIAFFIRLVVGRGRLHIFSWLNFMKRVINMQIIIHVFGDEES-------VKILKICREAITSKA-------- 145 (181)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~iLHdw~D~~~-------~~iL~~~~~a~~~~g-------- 145 (181)
.-+|+.-..- . -.+..| .|+.++. .++|+++...++|||
T Consensus 323 ~Pcsg~g~~~-----~------~p~~~~---------------~~~~~~~~~l~~~q~~~L~~a~~~LkpGG~lvystcs 376 (429)
T 1sqg_A 323 APCSATGVIR-----R------HPDIKW---------------LRRDRDIPELAQLQSEILDAIWPHLKTGGTLVYATCS 376 (429)
T ss_dssp CCCCCGGGTT-----T------CTTHHH---------------HCCTTHHHHHHHHHHHHHHHHGGGEEEEEEEEEEESC
T ss_pred CCCCcccccC-----C------Ccchhh---------------cCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEECC
Confidence 5443221100 0 000011 1222322 488999999999999
Q ss_pred --ccCCHHHHHHHHHhC-CCeEE
Q 036440 146 --KLSTEKELESLFVEV-HFHHY 165 (181)
Q Consensus 146 --~eRt~~E~~~Ll~~a-Gf~~~ 165 (181)
.+-.++.....+++. +|+.+
T Consensus 377 ~~~~ene~~v~~~l~~~~~~~~~ 399 (429)
T 1sqg_A 377 VLPEENSLQIKAFLQRTADAELC 399 (429)
T ss_dssp CCGGGTHHHHHHHHHHCTTCEEC
T ss_pred CChhhHHHHHHHHHHhCCCCEEe
Confidence 444566777888775 57653
|
| >3tm4_A TRNA (guanine N2-)-methyltransferase TRM14; rossmann fold, thump domain, tRNA methyltransferase; HET: SAM; 1.95A {Pyrococcus furiosus} PDB: 3tlj_A* 3tm5_A* | Back alignment and structure |
|---|
Probab=89.84 E-value=1.9 Score=37.12 Aligned_cols=114 Identities=13% Similarity=0.053 Sum_probs=71.7
Q ss_pred hcCCCeEEEec------------CCCCceEEEeec-hhhhhhhcc-------CCCceEEecCCCCC-CCC--cceEeccc
Q 036440 25 FERLGSLVDVG------------AFPCVKCTEFDQ-PHVVANLLD-------TNNLKYLADDFFQS-IPP--VCMIPLRL 81 (181)
Q Consensus 25 ~~~~~~lvDvG------------~~P~l~~~~~Dl-P~Vv~~a~~-------~~ri~~~~gDff~~-~P~--~d~~~~~~ 81 (181)
+..-.+|+|+| ..+..+.+.+|+ |..++.+.. .++|++..+|+.+. .|. .|++..+.
T Consensus 215 ~~~~~~vLD~gCGsG~~~i~~a~~~~~~~v~g~Dis~~~l~~A~~n~~~~gl~~~i~~~~~D~~~~~~~~~~fD~Ii~np 294 (373)
T 3tm4_A 215 ELDGGSVLDPMCGSGTILIELALRRYSGEIIGIEKYRKHLIGAEMNALAAGVLDKIKFIQGDATQLSQYVDSVDFAISNL 294 (373)
T ss_dssp TCCSCCEEETTCTTCHHHHHHHHTTCCSCEEEEESCHHHHHHHHHHHHHTTCGGGCEEEECCGGGGGGTCSCEEEEEEEC
T ss_pred cCCCCEEEEccCcCcHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHHcCCCCceEEEECChhhCCcccCCcCEEEECC
Confidence 45667999999 556557888998 566665542 46899999999873 332 57773332
Q ss_pred cchhhhHHhhhhhhhhcCCCccchhhhhhcccccceeeeeeccCChHHHHHHHHHHHHHhccCC--ccCCHHHHHHHHHh
Q 036440 82 GYSHIKIMIAFFIRLVVGRGRLHIFSWLNFMKRVINMQIIIHVFGDEESVKILKICREAITSKA--KLSTEKELESLFVE 159 (181)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~iLHdw~D~~~~~iL~~~~~a~~~~g--~eRt~~E~~~Ll~~ 159 (181)
-|. .+.--+....+--.++++.+...++.++ -.-+.+++++.+.+
T Consensus 295 Pyg---------------------------------~r~~~~~~~~~ly~~~~~~l~r~l~g~~~~i~~~~~~~~~~~~~ 341 (373)
T 3tm4_A 295 PYG---------------------------------LKIGKKSMIPDLYMKFFNELAKVLEKRGVFITTEKKAIEEAIAE 341 (373)
T ss_dssp CCC---------------------------------------CCHHHHHHHHHHHHHHHEEEEEEEEESCHHHHHHHHHH
T ss_pred CCC---------------------------------cccCcchhHHHHHHHHHHHHHHHcCCeEEEEECCHHHHHHHHHH
Confidence 210 0000000011112567788888772222 56678899999999
Q ss_pred CCCeEEEEEEcC
Q 036440 160 VHFHHYKITPLF 171 (181)
Q Consensus 160 aGf~~~~i~~~~ 171 (181)
.||+..+..++.
T Consensus 342 ~G~~~~~~~~~~ 353 (373)
T 3tm4_A 342 NGFEIIHHRVIG 353 (373)
T ss_dssp TTEEEEEEEEEE
T ss_pred cCCEEEEEEEEE
Confidence 999998877663
|
| >1uwv_A 23S rRNA (uracil-5-)-methyltransferase RUMA; RNA modification, iron-sulfur cluster, RNA processing; 1.95A {Escherichia coli} SCOP: b.40.4.12 c.66.1.40 PDB: 2bh2_A* | Back alignment and structure |
|---|
Probab=89.82 E-value=2 Score=37.68 Aligned_cols=47 Identities=9% Similarity=0.201 Sum_probs=33.9
Q ss_pred hcCCCeEEEec-----------CCCCceEEEeec-hhhhhhhcc------CCCceEEecCCCCCCC
Q 036440 25 FERLGSLVDVG-----------AFPCVKCTEFDQ-PHVVANLLD------TNNLKYLADDFFQSIP 72 (181)
Q Consensus 25 ~~~~~~lvDvG-----------~~P~l~~~~~Dl-P~Vv~~a~~------~~ri~~~~gDff~~~P 72 (181)
...-.+++|+| +. ..+.+.+|. |..++.+.. -++++++.+|+++.++
T Consensus 284 ~~~~~~VLDlgcG~G~~~~~la~~-~~~V~gvD~s~~al~~A~~n~~~~~~~~v~f~~~d~~~~l~ 348 (433)
T 1uwv_A 284 VQPEDRVLDLFCGMGNFTLPLATQ-AASVVGVEGVPALVEKGQQNARLNGLQNVTFYHENLEEDVT 348 (433)
T ss_dssp CCTTCEEEEESCTTTTTHHHHHTT-SSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCTTSCCS
T ss_pred CCCCCEEEECCCCCCHHHHHHHhh-CCEEEEEeCCHHHHHHHHHHHHHcCCCceEEEECCHHHHhh
Confidence 34557899999 33 568899998 566665542 2489999999987543
|
| >2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A* | Back alignment and structure |
|---|
Probab=89.70 E-value=3 Score=38.73 Aligned_cols=25 Identities=16% Similarity=0.188 Sum_probs=20.4
Q ss_pred ccCCHHHHHHHHHhCCCeEEEEEEc
Q 036440 146 KLSTEKELESLFVEVHFHHYKITPL 170 (181)
Q Consensus 146 ~eRt~~E~~~Ll~~aGf~~~~i~~~ 170 (181)
...|.++..+.|.+.||+.+....+
T Consensus 285 ~~~~~~~~~~~~~~~Gw~~v~~~~~ 309 (695)
T 2zwa_A 285 KYNTIESQVQRFNKLGFAYVNVGDM 309 (695)
T ss_dssp TCCSHHHHHHHHHHTTCCEEEEEEH
T ss_pred cCCCHHHHHHHHHHCCCCCcceeeH
Confidence 4557999999999999998776643
|
| >3ajd_A Putative methyltransferase MJ0026; tRNA, M5C, rossmann fold, structural genomics, riken structu genomics/proteomics initiative; 1.27A {Methanocaldococcus jannaschii} PDB: 3a4t_A | Back alignment and structure |
|---|
Probab=89.41 E-value=0.84 Score=37.31 Aligned_cols=114 Identities=11% Similarity=0.004 Sum_probs=68.7
Q ss_pred hhcCCCeEEEec------------CCCC-ceEEEeech-hhhhhhcc------CCCceEEecCCCCCC------C-Ccce
Q 036440 24 IFERLGSLVDVG------------AFPC-VKCTEFDQP-HVVANLLD------TNNLKYLADDFFQSI------P-PVCM 76 (181)
Q Consensus 24 d~~~~~~lvDvG------------~~P~-l~~~~~DlP-~Vv~~a~~------~~ri~~~~gDff~~~------P-~~d~ 76 (181)
+...-.+|+|+| ..++ .+.+.+|.- ..++.+.. ..+++++.+|+.+.. + ..|.
T Consensus 80 ~~~~g~~VLDlgaG~G~~t~~la~~~~~~~~v~avD~~~~~l~~~~~~~~~~g~~~v~~~~~D~~~~~~~~~~~~~~fD~ 159 (274)
T 3ajd_A 80 NPREDDFILDMCAAPGGKTTHLAQLMKNKGTIVAVEISKTRTKALKSNINRMGVLNTIIINADMRKYKDYLLKNEIFFDK 159 (274)
T ss_dssp CCCTTCEEEETTCTTCHHHHHHHHHTTTCSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCHHHHHHHHHHTTCCEEE
T ss_pred CCCCcCEEEEeCCCccHHHHHHHHHcCCCCEEEEECCCHHHHHHHHHHHHHhCCCcEEEEeCChHhcchhhhhccccCCE
Confidence 445567999999 3455 788999984 44544321 248999999987531 2 3688
Q ss_pred EeccccchhhhHHhhhhhhhhcCCCccchhhhhhcccccceeeeeeccCChHH-------HHHHHHHHHHHhccCC----
Q 036440 77 IPLRLGYSHIKIMIAFFIRLVVGRGRLHIFSWLNFMKRVINMQIIIHVFGDEE-------SVKILKICREAITSKA---- 145 (181)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~iLHdw~D~~-------~~~iL~~~~~a~~~~g---- 145 (181)
++++.-+|+.-. +++- -.|+.++ -.++|+++...++|||
T Consensus 160 Vl~d~Pcs~~g~-----------------------------~~~~-p~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lv~ 209 (274)
T 3ajd_A 160 ILLDAPCSGNII-----------------------------KDKN-RNVSEEDIKYCSLRQKELIDIGIDLLKKDGELVY 209 (274)
T ss_dssp EEEEECCC------------------------------------------HHHHTGGGTCHHHHHHHHHHHEEEEEEEEE
T ss_pred EEEcCCCCCCcc-----------------------------cccC-CCCCHHHHHHHHHHHHHHHHHHHHhCCCCCEEEE
Confidence 855544332110 0000 0233332 3689999999999999
Q ss_pred ------ccCCHHHHHHHHHh-CCCeEEEE
Q 036440 146 ------KLSTEKELESLFVE-VHFHHYKI 167 (181)
Q Consensus 146 ------~eRt~~E~~~Ll~~-aGf~~~~i 167 (181)
.+-+++..+.++++ .+|+.+.+
T Consensus 210 stcs~~~~ene~~v~~~l~~~~~~~~~~~ 238 (274)
T 3ajd_A 210 STCSMEVEENEEVIKYILQKRNDVELIII 238 (274)
T ss_dssp EESCCCTTSSHHHHHHHHHHCSSEEEECC
T ss_pred EECCCChHHhHHHHHHHHHhCCCcEEecC
Confidence 45567778888866 45766543
|
| >1xj5_A Spermidine synthase 1; structural genomics, protein structure initiative, CESG, AT1G23820, putrescine aminopropyl transferase, SPDS1; 2.70A {Arabidopsis thaliana} SCOP: c.66.1.17 PDB: 2q41_A | Back alignment and structure |
|---|
Probab=89.38 E-value=0.54 Score=40.44 Aligned_cols=52 Identities=8% Similarity=-0.026 Sum_probs=38.1
Q ss_pred cCCCeEEEec------------CCCCceEEEeec-hhhhhhhcc----------CCCceEEecCCCCC---CCC--cceE
Q 036440 26 ERLGSLVDVG------------AFPCVKCTEFDQ-PHVVANLLD----------TNNLKYLADDFFQS---IPP--VCMI 77 (181)
Q Consensus 26 ~~~~~lvDvG------------~~P~l~~~~~Dl-P~Vv~~a~~----------~~ri~~~~gDff~~---~P~--~d~~ 77 (181)
....+||||| ..|..+.+.+|+ |.+++.++. .+|++++.+|.++. .+. .|++
T Consensus 119 ~~~~~VLdIG~G~G~~a~~la~~~~~~~V~~VDis~~~l~~Ar~~~~~~~~gl~~~rv~~~~~D~~~~l~~~~~~~fDlI 198 (334)
T 1xj5_A 119 PNPKKVLVIGGGDGGVLREVARHASIEQIDMCEIDKMVVDVSKQFFPDVAIGYEDPRVNLVIGDGVAFLKNAAEGSYDAV 198 (334)
T ss_dssp SCCCEEEEETCSSSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGSTTEEEEESCHHHHHHTSCTTCEEEE
T ss_pred CCCCEEEEECCCccHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHhhccccCCCcEEEEECCHHHHHHhccCCCccEE
Confidence 3557999999 346789999998 667765531 46999999998753 332 5877
|
| >3a27_A TYW2, uncharacterized protein MJ1557; wybutosine modification, transferase; HET: SAM; 2.00A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=88.97 E-value=1 Score=36.90 Aligned_cols=52 Identities=13% Similarity=-0.010 Sum_probs=38.6
Q ss_pred hcCCCeEEEec------------CCCCceEEEeec-hhhhhhhcc------CCCceEEecCCCCCCCC---cceE
Q 036440 25 FERLGSLVDVG------------AFPCVKCTEFDQ-PHVVANLLD------TNNLKYLADDFFQSIPP---VCMI 77 (181)
Q Consensus 25 ~~~~~~lvDvG------------~~P~l~~~~~Dl-P~Vv~~a~~------~~ri~~~~gDff~~~P~---~d~~ 77 (181)
+..-.+|+|+| +.|..+.+.+|+ |..++.+.. -++++++.+|.++. |. .|++
T Consensus 117 ~~~~~~VLDlgcG~G~~s~~la~~~~~~~V~~vD~s~~av~~a~~n~~~n~l~~~~~~~~d~~~~-~~~~~~D~V 190 (272)
T 3a27_A 117 SNENEVVVDMFAGIGYFTIPLAKYSKPKLVYAIEKNPTAYHYLCENIKLNKLNNVIPILADNRDV-ELKDVADRV 190 (272)
T ss_dssp CCTTCEEEETTCTTTTTHHHHHHHTCCSEEEEEECCHHHHHHHHHHHHHTTCSSEEEEESCGGGC-CCTTCEEEE
T ss_pred cCCCCEEEEecCcCCHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEECChHHc-CccCCceEE
Confidence 55567999999 457778999998 777765542 24789999999876 43 5766
|
| >3b5i_A S-adenosyl-L-methionine:salicylic acid carboxyl methyltransferase-like protein; sabath family, indole-3-acetic acid, S-AD methionine; HET: SAH; 2.75A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=88.87 E-value=3 Score=36.81 Aligned_cols=23 Identities=9% Similarity=0.104 Sum_probs=19.9
Q ss_pred ccCCHHHHHHHHH-hCCCeEEEEE
Q 036440 146 KLSTEKELESLFV-EVHFHHYKIT 168 (181)
Q Consensus 146 ~eRt~~E~~~Ll~-~aGf~~~~i~ 168 (181)
.-+|.+|++.+++ +.||++.++.
T Consensus 273 y~ps~~E~~~~l~~~~~F~I~~le 296 (374)
T 3b5i_A 273 YAPSLQDFKEVVDANGSFAIDKLV 296 (374)
T ss_dssp CCCCHHHHHHHHHHHCSEEEEEEE
T ss_pred cCCCHHHHHHHHHhcCCcEEEEEE
Confidence 5699999999998 5999998765
|
| >2igt_A SAM dependent methyltransferase; alpha-beta sandwich, beta-barrel, structural genomics, PSI-2 structure initiative; HET: MSE SAM GOL; 1.89A {Agrobacterium tumefaciens str} SCOP: c.66.1.51 | Back alignment and structure |
|---|
Probab=88.32 E-value=1.6 Score=37.32 Aligned_cols=108 Identities=17% Similarity=0.143 Sum_probs=66.4
Q ss_pred CCCeEEEec----------CCCCceEEEeec-hhhhhhhc-------cCC-CceEEecCCCCCCC-------CcceEecc
Q 036440 27 RLGSLVDVG----------AFPCVKCTEFDQ-PHVVANLL-------DTN-NLKYLADDFFQSIP-------PVCMIPLR 80 (181)
Q Consensus 27 ~~~~lvDvG----------~~P~l~~~~~Dl-P~Vv~~a~-------~~~-ri~~~~gDff~~~P-------~~d~~~~~ 80 (181)
.-.+|||+| +-.+.+.+.+|+ |..++.+. ..+ +++++.+|.++.++ ..|++.++
T Consensus 153 ~~~~VLDlgcGtG~~sl~la~~ga~V~~VD~s~~al~~a~~n~~~~gl~~~~v~~i~~D~~~~l~~~~~~~~~fD~Ii~d 232 (332)
T 2igt_A 153 RPLKVLNLFGYTGVASLVAAAAGAEVTHVDASKKAIGWAKENQVLAGLEQAPIRWICEDAMKFIQREERRGSTYDIILTD 232 (332)
T ss_dssp SCCEEEEETCTTCHHHHHHHHTTCEEEEECSCHHHHHHHHHHHHHHTCTTSCEEEECSCHHHHHHHHHHHTCCBSEEEEC
T ss_pred CCCcEEEcccccCHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHHcCCCccceEEEECcHHHHHHHHHhcCCCceEEEEC
Confidence 446899999 222348899998 56665443 233 59999999987432 35777332
Q ss_pred ccchhhhHHhhhhhhhhcCCCccchhhhhhcccccceeeeeeccCChHHHHHHHHHHHHHhccCC---------ccCCHH
Q 036440 81 LGYSHIKIMIAFFIRLVVGRGRLHIFSWLNFMKRVINMQIIIHVFGDEESVKILKICREAITSKA---------KLSTEK 151 (181)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~iLHdw~D~~~~~iL~~~~~a~~~~g---------~eRt~~ 151 (181)
.-+. +.+ + -..+. ++ .+.-.++|+.+...++|+| ...+.+
T Consensus 233 PP~~--------------~~~-----------~----~~~~~-~~-~~~~~~ll~~~~~~LkpgG~lli~~~~~~~~~~~ 281 (332)
T 2igt_A 233 PPKF--------------GRG-----------T----HGEVW-QL-FDHLPLMLDICREILSPKALGLVLTAYSIRASFY 281 (332)
T ss_dssp CCSE--------------EEC-----------T----TCCEE-EH-HHHHHHHHHHHHHTBCTTCCEEEEEECCTTSCHH
T ss_pred Cccc--------------cCC-----------c----hHHHH-HH-HHHHHHHHHHHHHhcCcCcEEEEEECCCCCCCHH
Confidence 2100 000 0 00011 11 2344689999999999999 234677
Q ss_pred HHHHHHH----hCCCeEE
Q 036440 152 ELESLFV----EVHFHHY 165 (181)
Q Consensus 152 E~~~Ll~----~aGf~~~ 165 (181)
++.++++ ++|+++.
T Consensus 282 ~~~~~l~~a~~~~g~~v~ 299 (332)
T 2igt_A 282 SMHELMRETMRGAGGVVA 299 (332)
T ss_dssp HHHHHHHHHTTTSCSEEE
T ss_pred HHHHHHHHHHHHcCCeEE
Confidence 8888887 6788764
|
| >2cmg_A Spermidine synthase; transferase, putrescine aminopropyltransferase, spermidine biosynthesis, polyamine biosynthesis, SPEE; 2.0A {Helicobacter pylori} PDB: 2cmh_A | Back alignment and structure |
|---|
Probab=87.72 E-value=1 Score=37.26 Aligned_cols=50 Identities=10% Similarity=0.136 Sum_probs=37.4
Q ss_pred CCCeEEEec-----------CCCCceEEEeec-hhhhhhhcc----------CCCceEEecCCCCCCCCcceE
Q 036440 27 RLGSLVDVG-----------AFPCVKCTEFDQ-PHVVANLLD----------TNNLKYLADDFFQSIPPVCMI 77 (181)
Q Consensus 27 ~~~~lvDvG-----------~~P~l~~~~~Dl-P~Vv~~a~~----------~~ri~~~~gDff~~~P~~d~~ 77 (181)
..++|+||| ++| .+.+.+|+ |.+++.++. .+|++++.+|.++-+-..|++
T Consensus 72 ~~~~VL~iG~G~G~~~~~ll~~~-~~v~~veid~~~i~~ar~~~~~~~~~~~~~rv~~~~~D~~~~~~~fD~I 143 (262)
T 2cmg_A 72 ELKEVLIVDGFDLELAHQLFKYD-THIDFVQADEKILDSFISFFPHFHEVKNNKNFTHAKQLLDLDIKKYDLI 143 (262)
T ss_dssp CCCEEEEESSCCHHHHHHHTTSS-CEEEEECSCHHHHGGGTTTSTTHHHHHTCTTEEEESSGGGSCCCCEEEE
T ss_pred CCCEEEEEeCCcCHHHHHHHhCC-CEEEEEECCHHHHHHHHHHHHhhccccCCCeEEEEechHHHHHhhCCEE
Confidence 457899999 566 88999998 677776642 468999999988754225776
|
| >2pbf_A Protein-L-isoaspartate O-methyltransferase beta-A methyltransferase; protein repair, isoaspartyl formation, P. falciparum; HET: SAH; 2.00A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=87.47 E-value=1.5 Score=33.76 Aligned_cols=47 Identities=17% Similarity=0.259 Sum_probs=34.4
Q ss_pred hcCCCeEEEec------------C-C----CCceEEEeec-hhhhhhhcc-----------CCCceEEecCCCCCC
Q 036440 25 FERLGSLVDVG------------A-F----PCVKCTEFDQ-PHVVANLLD-----------TNNLKYLADDFFQSI 71 (181)
Q Consensus 25 ~~~~~~lvDvG------------~-~----P~l~~~~~Dl-P~Vv~~a~~-----------~~ri~~~~gDff~~~ 71 (181)
...-.+|+|+| . . |..+.+.+|. |..++.+.. .++++++.+|..+..
T Consensus 78 ~~~~~~VLdiG~G~G~~~~~la~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~ 153 (227)
T 2pbf_A 78 LKPGSRAIDVGSGSGYLTVCMAIKMNVLENKNSYVIGLERVKDLVNFSLENIKRDKPELLKIDNFKIIHKNIYQVN 153 (227)
T ss_dssp SCTTCEEEEESCTTSHHHHHHHHHTTTTTCTTCEEEEEESCHHHHHHHHHHHHHHCGGGGSSTTEEEEECCGGGCC
T ss_pred CCCCCEEEEECCCCCHHHHHHHHHhcccCCCCCEEEEEeCCHHHHHHHHHHHHHcCccccccCCEEEEECChHhcc
Confidence 44557999999 2 2 6789999998 555555432 368999999998754
|
| >2p41_A Type II methyltransferase; vizier, viral enzymes involved in replication, dengue virus methyltransferase, structural genomics; HET: G1G SAH CIT; 1.80A {Dengue virus 2} SCOP: c.66.1.25 PDB: 2p1d_A* 1l9k_A* 2p3o_A* 2p3q_A* 2p40_A* 2p3l_A* 1r6a_A* | Back alignment and structure |
|---|
Probab=85.41 E-value=1.7 Score=36.71 Aligned_cols=55 Identities=18% Similarity=0.158 Sum_probs=33.8
Q ss_pred hcCCCeEEEecCCCC---------ceEEEeec-----hhhhhhhc--c--CCCceEEec-CCCCCCC-CcceEec
Q 036440 25 FERLGSLVDVGAFPC---------VKCTEFDQ-----PHVVANLL--D--TNNLKYLAD-DFFQSIP-PVCMIPL 79 (181)
Q Consensus 25 ~~~~~~lvDvG~~P~---------l~~~~~Dl-----P~Vv~~a~--~--~~ri~~~~g-Dff~~~P-~~d~~~~ 79 (181)
+..-.+|||+|.-|+ -+.+.+|. +..++... . .++++++.+ |+++.-+ ..|++..
T Consensus 80 ~~~g~~VLDlGcG~G~~s~~la~~~~V~gvD~~~~~~~~~~~~~~~~~~~~~~v~~~~~~D~~~l~~~~fD~V~s 154 (305)
T 2p41_A 80 VTPEGKVVDLGCGRGGWSYYCGGLKNVREVKGLTKGGPGHEEPIPMSTYGWNLVRLQSGVDVFFIPPERCDTLLC 154 (305)
T ss_dssp SCCCEEEEEETCTTSHHHHHHHTSTTEEEEEEECCCSTTSCCCCCCCSTTGGGEEEECSCCTTTSCCCCCSEEEE
T ss_pred CCCCCEEEEEcCCCCHHHHHHHhcCCEEEEeccccCchhHHHHHHhhhcCCCCeEEEeccccccCCcCCCCEEEE
Confidence 444579999993333 35778888 53332221 1 267999999 9886322 3688833
|
| >2qy6_A UPF0209 protein YFCK; structural genomics, unknown function, PSI-2, protein struct initiative; 2.00A {Escherichia coli} | Back alignment and structure |
|---|
Probab=85.15 E-value=0.31 Score=40.61 Aligned_cols=49 Identities=10% Similarity=-0.004 Sum_probs=37.4
Q ss_pred HHHHHHHHHHhccCCccCC---HHHHHHHHHhCCCeEEEEEEcCCCCeEEEE
Q 036440 131 VKILKICREAITSKAKLST---EKELESLFVEVHFHHYKITPLFGLPSLIEV 179 (181)
Q Consensus 131 ~~iL~~~~~a~~~~g~eRt---~~E~~~Ll~~aGf~~~~i~~~~~~~~viE~ 179 (181)
..+|+.++..++|||...| ...+++.|.+|||++.++...++....+.+
T Consensus 193 ~~~l~~l~~~L~pGG~l~tysaa~~vrr~L~~aGF~v~~~~g~~~kr~m~~a 244 (257)
T 2qy6_A 193 QNLFNAMARLARPGGTLATFTSAGFVRRGLQEAGFTMQKRKGFGRKREMLCG 244 (257)
T ss_dssp HHHHHHHHHHEEEEEEEEESCCBHHHHHHHHHHTEEEEEECCSTTCCCEEEE
T ss_pred HHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHCCCEEEeCCCCCCCCceEEE
Confidence 4689999999999996666 678999999999998776544445444443
|
| >1m6y_A S-adenosyl-methyltransferase MRAW; SAM-dependent methyltransferase fold, protein-cofactor product complex, structural genomics, PSI; HET: SAH; 1.90A {Thermotoga maritima} SCOP: a.60.13.1 c.66.1.23 PDB: 1n2x_A* | Back alignment and structure |
|---|
Probab=84.31 E-value=1.1 Score=38.23 Aligned_cols=69 Identities=14% Similarity=0.186 Sum_probs=50.2
Q ss_pred HHHHHHhhhhhcCCCeEEEec------------CCCCceEEEeec-hhhhhhhcc-----CCCceEEecCCCCC---C--
Q 036440 15 SLALKYCKQIFERLGSLVDVG------------AFPCVKCTEFDQ-PHVVANLLD-----TNNLKYLADDFFQS---I-- 71 (181)
Q Consensus 15 ~~~l~~~~~d~~~~~~lvDvG------------~~P~l~~~~~Dl-P~Vv~~a~~-----~~ri~~~~gDff~~---~-- 71 (181)
..+++.. +...-.++||+| ++|+.+.+.+|+ |..++.+.. .+|++++.+||.+- +
T Consensus 16 ~e~l~~L--~~~~g~~vLD~g~G~G~~s~~la~~~~~~~VigvD~d~~al~~A~~~~~~~g~~v~~v~~d~~~l~~~l~~ 93 (301)
T 1m6y_A 16 REVIEFL--KPEDEKIILDCTVGEGGHSRAILEHCPGCRIIGIDVDSEVLRIAEEKLKEFSDRVSLFKVSYREADFLLKT 93 (301)
T ss_dssp HHHHHHH--CCCTTCEEEETTCTTSHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHTGGGTTTEEEEECCGGGHHHHHHH
T ss_pred HHHHHhc--CCCCCCEEEEEeCCcCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhcCCcEEEEECCHHHHHHHHHh
Confidence 4556665 455667999999 678889999998 566665532 26999999997541 1
Q ss_pred ---CCcceEeccccchh
Q 036440 72 ---PPVCMIPLRLGYSH 85 (181)
Q Consensus 72 ---P~~d~~~~~~~~~~ 85 (181)
...|.+++++++|.
T Consensus 94 ~g~~~~D~Vl~D~gvSs 110 (301)
T 1m6y_A 94 LGIEKVDGILMDLGVST 110 (301)
T ss_dssp TTCSCEEEEEEECSCCH
T ss_pred cCCCCCCEEEEcCccch
Confidence 24688888998763
|
| >3o4f_A Spermidine synthase; aminopropyltransferase, polyamine synthase, rossmann fold, P biosynthesis, spermidine biosynthesis, transferase; 2.90A {Escherichia coli} | Back alignment and structure |
|---|
Probab=83.90 E-value=2.9 Score=35.86 Aligned_cols=52 Identities=19% Similarity=0.159 Sum_probs=37.8
Q ss_pred cCCCeEEEec-----------CCCCc-eEEEeec-hhhhhhhc-----------cCCCceEEecCCCCCCC---C-cceE
Q 036440 26 ERLGSLVDVG-----------AFPCV-KCTEFDQ-PHVVANLL-----------DTNNLKYLADDFFQSIP---P-VCMI 77 (181)
Q Consensus 26 ~~~~~lvDvG-----------~~P~l-~~~~~Dl-P~Vv~~a~-----------~~~ri~~~~gDff~~~P---~-~d~~ 77 (181)
...++|+=|| +||.+ +.+++|+ |.|++.++ ..+|++.+.+|-++-+- . .|+|
T Consensus 82 p~pk~VLIiGgGdG~~~revlk~~~v~~v~~VEID~~Vv~~a~~~lp~~~~~~~~dpRv~v~~~Dg~~~l~~~~~~yDvI 161 (294)
T 3o4f_A 82 GHAKHVLIIGGGDGAMLREVTRHKNVESITMVEIDAGVVSFCRQYLPNHNAGSYDDPRFKLVIDDGVNFVNQTSQTFDVI 161 (294)
T ss_dssp SCCCEEEEESCTTSHHHHHHHTCTTCCEEEEEESCHHHHHHHHHHCHHHHTTGGGCTTEEEEESCTTTTTSCSSCCEEEE
T ss_pred CCCCeEEEECCCchHHHHHHHHcCCcceEEEEcCCHHHHHHHHhcCccccccccCCCcEEEEechHHHHHhhccccCCEE
Confidence 3567888888 88765 6888888 67777553 26899999999886432 2 4777
|
| >1r18_A Protein-L-isoaspartate(D-aspartate)-O-methyltrans; methyltransferase, isomerization, protein repair, S-adenosyl homocysteine; HET: SAH; 2.20A {Drosophila melanogaster} SCOP: c.66.1.7 | Back alignment and structure |
|---|
Probab=83.52 E-value=1 Score=35.07 Aligned_cols=53 Identities=17% Similarity=0.241 Sum_probs=36.8
Q ss_pred hcCCCeEEEec------------CCC------CceEEEeec-hhhhhhhcc-----------CCCceEEecCCCCCCCC-
Q 036440 25 FERLGSLVDVG------------AFP------CVKCTEFDQ-PHVVANLLD-----------TNNLKYLADDFFQSIPP- 73 (181)
Q Consensus 25 ~~~~~~lvDvG------------~~P------~l~~~~~Dl-P~Vv~~a~~-----------~~ri~~~~gDff~~~P~- 73 (181)
...-.+|+|+| ..+ ..+.+.+|. |..++.+.. .+++++..+|..+.+|.
T Consensus 82 ~~~~~~VLdiG~G~G~~~~~la~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~ 161 (227)
T 1r18_A 82 LKPGARILDVGSGSGYLTACFYRYIKAKGVDADTRIVGIEHQAELVRRSKANLNTDDRSMLDSGQLLIVEGDGRKGYPPN 161 (227)
T ss_dssp CCTTCEEEEESCTTSHHHHHHHHHHHHSCCCTTCEEEEEESCHHHHHHHHHHHHHHHHHHHHHTSEEEEESCGGGCCGGG
T ss_pred CCCCCEEEEECCCccHHHHHHHHhcccccCCccCEEEEEEcCHHHHHHHHHHHHhcCccccCCCceEEEECCcccCCCcC
Confidence 34456999999 233 357899997 555554432 36899999999886654
Q ss_pred --cceE
Q 036440 74 --VCMI 77 (181)
Q Consensus 74 --~d~~ 77 (181)
.|++
T Consensus 162 ~~fD~I 167 (227)
T 1r18_A 162 APYNAI 167 (227)
T ss_dssp CSEEEE
T ss_pred CCccEE
Confidence 5777
|
| >2h1r_A Dimethyladenosine transferase, putative; SGC toronto dimethyladenosine transferase, structural genomics, structural genomics consortium; 1.89A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=83.46 E-value=5.2 Score=33.26 Aligned_cols=68 Identities=13% Similarity=0.219 Sum_probs=41.4
Q ss_pred HHHHHHhhhhhcCCCeEEEec----------CCCCceEEEeec-hhhhhhhcc------CCCceEEecCCCCC-CCCcce
Q 036440 15 SLALKYCKQIFERLGSLVDVG----------AFPCVKCTEFDQ-PHVVANLLD------TNNLKYLADDFFQS-IPPVCM 76 (181)
Q Consensus 15 ~~~l~~~~~d~~~~~~lvDvG----------~~P~l~~~~~Dl-P~Vv~~a~~------~~ri~~~~gDff~~-~P~~d~ 76 (181)
..+++.. +...-.+|+|+| +--..+.+.+|+ |..++.+.. .++++++.+|+.+. .+..|.
T Consensus 32 ~~i~~~~--~~~~~~~VLDiG~G~G~lt~~La~~~~~v~~vDi~~~~~~~a~~~~~~~~~~~v~~~~~D~~~~~~~~~D~ 109 (299)
T 2h1r_A 32 DKIIYAA--KIKSSDIVLEIGCGTGNLTVKLLPLAKKVITIDIDSRMISEVKKRCLYEGYNNLEVYEGDAIKTVFPKFDV 109 (299)
T ss_dssp HHHHHHH--CCCTTCEEEEECCTTSTTHHHHTTTSSEEEEECSCHHHHHHHHHHHHHTTCCCEEC----CCSSCCCCCSE
T ss_pred HHHHHhc--CCCCcCEEEEEcCcCcHHHHHHHhcCCEEEEEECCHHHHHHHHHHHHHcCCCceEEEECchhhCCcccCCE
Confidence 4556665 455667999999 222457889998 555554432 26899999999863 445688
Q ss_pred Eeccccch
Q 036440 77 IPLRLGYS 84 (181)
Q Consensus 77 ~~~~~~~~ 84 (181)
+..++-|+
T Consensus 110 Vv~n~py~ 117 (299)
T 2h1r_A 110 CTANIPYK 117 (299)
T ss_dssp EEEECCGG
T ss_pred EEEcCCcc
Confidence 75555543
|
| >2yx1_A Hypothetical protein MJ0883; methyl transferase, tRNA modification enzyme, transferase; HET: SFG; 2.20A {Methanocaldococcus jannaschii} PDB: 2zzn_A* 3ay0_A* 2zzm_A* | Back alignment and structure |
|---|
Probab=83.23 E-value=2 Score=36.31 Aligned_cols=100 Identities=13% Similarity=0.028 Sum_probs=65.7
Q ss_pred hcCCCeEEEecCC---------CCceEEEeec-hhhhhhhcc-------CCCceEEecCCCCCCCCcceEeccccchhhh
Q 036440 25 FERLGSLVDVGAF---------PCVKCTEFDQ-PHVVANLLD-------TNNLKYLADDFFQSIPPVCMIPLRLGYSHIK 87 (181)
Q Consensus 25 ~~~~~~lvDvG~~---------P~l~~~~~Dl-P~Vv~~a~~-------~~ri~~~~gDff~~~P~~d~~~~~~~~~~~~ 87 (181)
+..-.+++|+|.+ ...+.+.+|+ |..++.+.. .++++++.+|.++.....|.+.++.-
T Consensus 193 ~~~~~~VLDlg~G~G~~~l~a~~~~~V~~vD~s~~ai~~a~~n~~~n~l~~~v~~~~~D~~~~~~~fD~Vi~dpP----- 267 (336)
T 2yx1_A 193 VSLNDVVVDMFAGVGPFSIACKNAKKIYAIDINPHAIELLKKNIKLNKLEHKIIPILSDVREVDVKGNRVIMNLP----- 267 (336)
T ss_dssp CCTTCEEEETTCTTSHHHHHTTTSSEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCGGGCCCCEEEEEECCT-----
T ss_pred cCCCCEEEEccCccCHHHHhccCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECChHHhcCCCcEEEECCc-----
Confidence 3455799999922 3457899998 666665532 36899999999976534677722211
Q ss_pred HHhhhhhhhhcCCCccchhhhhhcccccceeeeeeccCChHHHHHHHHHHHHHhccCC------ccCCHHHHHHHHHhC-
Q 036440 88 IMIAFFIRLVVGRGRLHIFSWLNFMKRVINMQIIIHVFGDEESVKILKICREAITSKA------KLSTEKELESLFVEV- 160 (181)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~iLHdw~D~~~~~iL~~~~~a~~~~g------~eRt~~E~~~Ll~~a- 160 (181)
....++++.+...++|+| -....++..+.++++
T Consensus 268 ----------------------------------------~~~~~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~~l~~~~ 307 (336)
T 2yx1_A 268 ----------------------------------------KFAHKFIDKALDIVEEGGVIHYYTIGKDFDKAIKLFEKKC 307 (336)
T ss_dssp ----------------------------------------TTGGGGHHHHHHHEEEEEEEEEEEEESSSHHHHHHHHHHS
T ss_pred ----------------------------------------HhHHHHHHHHHHHcCCCCEEEEEEeecCchHHHHHHHHhc
Confidence 111267888888888888 111156777777777
Q ss_pred CCeEEEEEE
Q 036440 161 HFHHYKITP 169 (181)
Q Consensus 161 Gf~~~~i~~ 169 (181)
|+...++..
T Consensus 308 ~~~i~~~~~ 316 (336)
T 2yx1_A 308 DCEVLEKRI 316 (336)
T ss_dssp EEEEEEEEE
T ss_pred CCcEEEEEE
Confidence 777655443
|
| >3m4x_A NOL1/NOP2/SUN family protein; mtase domain, PUA domain, RRM motif, transferase; 2.28A {Enterococcus faecium} | Back alignment and structure |
|---|
Probab=82.88 E-value=0.91 Score=41.06 Aligned_cols=119 Identities=14% Similarity=0.049 Sum_probs=72.7
Q ss_pred hhcCCCeEEEecCCCC-------------ceEEEeec-hhhhhhhcc------CCCceEEecCCCCC---CCC-cceEec
Q 036440 24 IFERLGSLVDVGAFPC-------------VKCTEFDQ-PHVVANLLD------TNNLKYLADDFFQS---IPP-VCMIPL 79 (181)
Q Consensus 24 d~~~~~~lvDvG~~P~-------------l~~~~~Dl-P~Vv~~a~~------~~ri~~~~gDff~~---~P~-~d~~~~ 79 (181)
+...-.+|+|+|+-|+ .+.+.+|+ |.-++.+.. ..++.++.+|..+- .+. .|.+++
T Consensus 102 ~~~~g~~VLDlcaGpGgkt~~lA~~~~~~g~V~AvDis~~rl~~~~~n~~r~g~~nv~v~~~Da~~l~~~~~~~FD~Il~ 181 (456)
T 3m4x_A 102 AAKPGEKVLDLCAAPGGKSTQLAAQMKGKGLLVTNEIFPKRAKILSENIERWGVSNAIVTNHAPAELVPHFSGFFDRIVV 181 (456)
T ss_dssp CCCTTCEEEESSCTTCHHHHHHHHHHTTCSEEEEECSSHHHHHHHHHHHHHHTCSSEEEECCCHHHHHHHHTTCEEEEEE
T ss_pred CCCCCCEEEEECCCcCHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCceEEEeCCHHHhhhhccccCCEEEE
Confidence 4455679999993333 46788887 344433321 34699999997642 333 688877
Q ss_pred cccchhhhHHhhhhhhhhcCCCccchhhhhhcccccceeeeeeccCChHH-------HHHHHHHHHHHhccCC-------
Q 036440 80 RLGYSHIKIMIAFFIRLVVGRGRLHIFSWLNFMKRVINMQIIIHVFGDEE-------SVKILKICREAITSKA------- 145 (181)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~iLHdw~D~~-------~~~iL~~~~~a~~~~g------- 145 (181)
+.-+|+.-.. |. | ..+...|..+. -.+||+.+...++|||
T Consensus 182 DaPCSg~G~~-----rr-------~--------------p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpGG~LvYsTC 235 (456)
T 3m4x_A 182 DAPCSGEGMF-----RK-------D--------------PNAIKEWTEESPLYCQKRQQEILSSAIKMLKNKGQLIYSTC 235 (456)
T ss_dssp ECCCCCGGGT-----TT-------C--------------HHHHHHCCTTHHHHHHHHHHHHHHHHHHTEEEEEEEEEEES
T ss_pred CCCCCCcccc-----cc-------C--------------HHHhhhcCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEEe
Confidence 6655432110 00 0 00111233222 2388999999999999
Q ss_pred ---ccCCHHHHHHHHHhCCCeEEEEE
Q 036440 146 ---KLSTEKELESLFVEVHFHHYKIT 168 (181)
Q Consensus 146 ---~eRt~~E~~~Ll~~aGf~~~~i~ 168 (181)
.+-.++..+.++++.||+++.+.
T Consensus 236 s~~~eEne~vv~~~l~~~~~~l~~~~ 261 (456)
T 3m4x_A 236 TFAPEENEEIISWLVENYPVTIEEIP 261 (456)
T ss_dssp CCCGGGTHHHHHHHHHHSSEEEECCC
T ss_pred ecccccCHHHHHHHHHhCCCEEEecc
Confidence 55677889999999997766543
|
| >2frx_A Hypothetical protein YEBU; rossmann-type S-adenosylmethionine-dependent methyltransfera domain; 2.90A {Escherichia coli} | Back alignment and structure |
|---|
Probab=82.56 E-value=9.7 Score=34.26 Aligned_cols=109 Identities=15% Similarity=-0.010 Sum_probs=67.7
Q ss_pred CCCeEEEecCC-------------CCceEEEeech-hhhhhhcc------CCCceEEecCCCCC---CCC-cceEecccc
Q 036440 27 RLGSLVDVGAF-------------PCVKCTEFDQP-HVVANLLD------TNNLKYLADDFFQS---IPP-VCMIPLRLG 82 (181)
Q Consensus 27 ~~~~lvDvG~~-------------P~l~~~~~DlP-~Vv~~a~~------~~ri~~~~gDff~~---~P~-~d~~~~~~~ 82 (181)
.-.+|+|+|+- +..+.+.+|+- .-++.+.. ..+++++.+|..+- .+. .|.++++.=
T Consensus 117 ~g~~VLDl~aGpG~kt~~lA~~~~~~g~V~avDis~~~l~~~~~n~~r~g~~nv~~~~~D~~~~~~~~~~~fD~Il~D~P 196 (479)
T 2frx_A 117 APQRVMDVAAAPGSKTTQISARMNNEGAILANEFSASRVKVLHANISRCGISNVALTHFDGRVFGAAVPEMFDAILLDAP 196 (479)
T ss_dssp CCSEEEESSCTTSHHHHHHHHHTTTCSEEEEECSSHHHHHHHHHHHHHHTCCSEEEECCCSTTHHHHSTTCEEEEEEECC
T ss_pred CCCEEEEeCCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCcEEEEeCCHHHhhhhccccCCEEEECCC
Confidence 55789999922 34678888873 44443321 34799999998752 333 688876655
Q ss_pred chhhhHHhhhhhhhhcCCCccchhhhhhcccccceeeeeeccCChHH-------HHHHHHHHHHHhccCC----------
Q 036440 83 YSHIKIMIAFFIRLVVGRGRLHIFSWLNFMKRVINMQIIIHVFGDEE-------SVKILKICREAITSKA---------- 145 (181)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~iLHdw~D~~-------~~~iL~~~~~a~~~~g---------- 145 (181)
+|+.-.. |. -..+...|..++ -.+||+.+...++|||
T Consensus 197 cSg~G~~-----~~---------------------~pd~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpGG~LvysTcs~~ 250 (479)
T 2frx_A 197 CSGEGVV-----RK---------------------DPDALKNWSPESNQEIAATQRELIDSAFHALRPGGTLVYSTCTLN 250 (479)
T ss_dssp CCCGGGG-----GT---------------------CTTSSSSCCHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEESCCS
T ss_pred cCCcccc-----cC---------------------CHHHHhhcCHhHHHHHHHHHHHHHHHHHHhcCCCCEEEEecccCC
Confidence 4432110 00 012234566544 2478999999999999
Q ss_pred ccCCHHHHHHHHHhCC
Q 036440 146 KLSTEKELESLFVEVH 161 (181)
Q Consensus 146 ~eRt~~E~~~Ll~~aG 161 (181)
.+-+++..+.++++.+
T Consensus 251 ~~Ene~vv~~~l~~~~ 266 (479)
T 2frx_A 251 QEENEAVCLWLKETYP 266 (479)
T ss_dssp STTTHHHHHHHHHHST
T ss_pred cccCHHHHHHHHHHCC
Confidence 4446667788888775
|
| >2ift_A Putative methylase HI0767; NESG, Y767_haein, structural genomics, PSI-2, protein structure initiative; 2.30A {Haemophilus influenzae} SCOP: c.66.1.46 | Back alignment and structure |
|---|
Probab=82.08 E-value=0.55 Score=36.40 Aligned_cols=51 Identities=12% Similarity=0.116 Sum_probs=34.5
Q ss_pred CCCeEEEec-----------CCCCceEEEeec-hhhhhhhcc-------C-CCceEEecCCCCCCC-----C-cceE
Q 036440 27 RLGSLVDVG-----------AFPCVKCTEFDQ-PHVVANLLD-------T-NNLKYLADDFFQSIP-----P-VCMI 77 (181)
Q Consensus 27 ~~~~lvDvG-----------~~P~l~~~~~Dl-P~Vv~~a~~-------~-~ri~~~~gDff~~~P-----~-~d~~ 77 (181)
.-.+|||+| +....+.+.+|+ |..++.+.. . ++++++.+|+.+..| . .|++
T Consensus 53 ~~~~vLDlGcGtG~~~~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~I 129 (201)
T 2ift_A 53 HQSECLDGFAGSGSLGFEALSRQAKKVTFLELDKTVANQLKKNLQTLKCSSEQAEVINQSSLDFLKQPQNQPHFDVV 129 (201)
T ss_dssp TTCEEEETTCTTCHHHHHHHHTTCSEEEEECSCHHHHHHHHHHHHHTTCCTTTEEEECSCHHHHTTSCCSSCCEEEE
T ss_pred CCCeEEEcCCccCHHHHHHHHccCCEEEEEECCHHHHHHHHHHHHHhCCCccceEEEECCHHHHHHhhccCCCCCEE
Confidence 346899999 222347899998 566665542 1 689999999876433 2 4776
|
| >2f8l_A Hypothetical protein LMO1582; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE SAM; 2.20A {Listeria monocytogenes} SCOP: c.66.1.45 | Back alignment and structure |
|---|
Probab=81.74 E-value=3.3 Score=34.78 Aligned_cols=115 Identities=10% Similarity=-0.033 Sum_probs=68.1
Q ss_pred CCCeEEEec------------CCCC-----ceEEEeec-hhhhhhhcc-----CCCceEEecCCCCCCCC--cceEeccc
Q 036440 27 RLGSLVDVG------------AFPC-----VKCTEFDQ-PHVVANLLD-----TNNLKYLADDFFQSIPP--VCMIPLRL 81 (181)
Q Consensus 27 ~~~~lvDvG------------~~P~-----l~~~~~Dl-P~Vv~~a~~-----~~ri~~~~gDff~~~P~--~d~~~~~~ 81 (181)
.-.+|+|+| ..|. .+.+.+|+ |..++.+.. ..++.+..+|.++..+. .|.+..+-
T Consensus 130 ~~~~VlDp~cGsG~~l~~~~~~~~~~~~~~~~v~GiDi~~~~~~~a~~n~~~~g~~~~i~~~D~l~~~~~~~fD~Ii~NP 209 (344)
T 2f8l_A 130 KNVSILDPACGTANLLTTVINQLELKGDVDVHASGVDVDDLLISLALVGADLQRQKMTLLHQDGLANLLVDPVDVVISDL 209 (344)
T ss_dssp SEEEEEETTCTTSHHHHHHHHHHHTTSSCEEEEEEEESCHHHHHHHHHHHHHHTCCCEEEESCTTSCCCCCCEEEEEEEC
T ss_pred CCCEEEeCCCCccHHHHHHHHHHHHhcCCCceEEEEECCHHHHHHHHHHHHhCCCCceEEECCCCCccccCCccEEEECC
Confidence 346899999 3333 67899998 556555532 23789999999986553 68885444
Q ss_pred cchhhhHHhhhhhhhhcCCCccchhhhhhcccccceeeeeeccCChHHHHHHHHHHHHHhccCC-----------ccCCH
Q 036440 82 GYSHIKIMIAFFIRLVVGRGRLHIFSWLNFMKRVINMQIIIHVFGDEESVKILKICREAITSKA-----------KLSTE 150 (181)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~iLHdw~D~~~~~iL~~~~~a~~~~g-----------~eRt~ 150 (181)
-|.|+.-. ..+.+|-.+. -+-.......+++.+...++|+| ...+.
T Consensus 210 Pfg~~~~~----------------~~~~~~~~~~-------~~g~~~~~~~~l~~~~~~Lk~gG~~~~v~p~~~~~~~~~ 266 (344)
T 2f8l_A 210 PVGYYPDD----------------ENAKTFELCR-------EEGHSFAHFLFIEQGMRYTKPGGYLFFLVPDAMFGTSDF 266 (344)
T ss_dssp CCSEESCH----------------HHHTTSTTCC-------SSSCEEHHHHHHHHHHHTEEEEEEEEEEEEGGGGGSTTH
T ss_pred CCCCcCch----------------hhhhhccccC-------CCCcchHHHHHHHHHHHHhCCCCEEEEEECchhcCCchH
Confidence 33221000 0000100000 00001123467888999999988 34567
Q ss_pred HHHHHHHHhCCCeE
Q 036440 151 KELESLFVEVHFHH 164 (181)
Q Consensus 151 ~E~~~Ll~~aGf~~ 164 (181)
++++++|.+.|+..
T Consensus 267 ~~ir~~l~~~~~~~ 280 (344)
T 2f8l_A 267 AKVDKFIKKNGHIE 280 (344)
T ss_dssp HHHHHHHHHHEEEE
T ss_pred HHHHHHHHhCCeEE
Confidence 89999999988743
|
| >2as0_A Hypothetical protein PH1915; RNA methyltransferase, structural genomics, PSI, protein structure initiative; 1.80A {Pyrococcus horikoshii} SCOP: b.122.1.9 c.66.1.51 | Back alignment and structure |
|---|
Probab=81.74 E-value=1.2 Score=38.26 Aligned_cols=106 Identities=8% Similarity=0.087 Sum_probs=63.0
Q ss_pred CCCeEEEec-----------CCCCceEEEeec-hhhhhhhcc-------CCCceEEecCCCCCCC-------CcceEecc
Q 036440 27 RLGSLVDVG-----------AFPCVKCTEFDQ-PHVVANLLD-------TNNLKYLADDFFQSIP-------PVCMIPLR 80 (181)
Q Consensus 27 ~~~~lvDvG-----------~~P~l~~~~~Dl-P~Vv~~a~~-------~~ri~~~~gDff~~~P-------~~d~~~~~ 80 (181)
.-.+|+|+| +.+..+.+.+|. |..++.+.. .++++++.+|.++..| ..|++.++
T Consensus 217 ~~~~VLDl~~G~G~~~~~la~~g~~~v~~vD~s~~~l~~a~~n~~~n~~~~~v~~~~~d~~~~~~~~~~~~~~fD~Vi~d 296 (396)
T 2as0_A 217 PGDRVLDVFTYTGGFAIHAAIAGADEVIGIDKSPRAIETAKENAKLNGVEDRMKFIVGSAFEEMEKLQKKGEKFDIVVLD 296 (396)
T ss_dssp TTCEEEETTCTTTHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHTTCCEEEEEEC
T ss_pred CCCeEEEecCCCCHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCccceEEECCHHHHHHHHHhhCCCCCEEEEC
Confidence 557999999 334457899998 566655432 2389999999986432 25777332
Q ss_pred ccchhhhHHhhhhhhhhcCCCccchhhhhhcccccceeeeeeccCChHHHHHHHHHHHHHhccCC--------ccCCHHH
Q 036440 81 LGYSHIKIMIAFFIRLVVGRGRLHIFSWLNFMKRVINMQIIIHVFGDEESVKILKICREAITSKA--------KLSTEKE 152 (181)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~iLHdw~D~~~~~iL~~~~~a~~~~g--------~eRt~~E 152 (181)
.-+.. .+. +.+. . ......++++.+...++|+| ...+.++
T Consensus 297 pP~~~--------------~~~----------------~~~~-~-~~~~~~~~l~~~~~~LkpgG~lv~~~~~~~~~~~~ 344 (396)
T 2as0_A 297 PPAFV--------------QHE----------------KDLK-A-GLRAYFNVNFAGLNLVKDGGILVTCSCSQHVDLQM 344 (396)
T ss_dssp CCCSC--------------SSG----------------GGHH-H-HHHHHHHHHHHHHTTEEEEEEEEEEECCTTSCHHH
T ss_pred CCCCC--------------CCH----------------HHHH-H-HHHHHHHHHHHHHHhcCCCcEEEEEECCCCCCHHH
Confidence 21100 000 0000 0 01456678999999999999 3455566
Q ss_pred HHHHHH----hCCCeE
Q 036440 153 LESLFV----EVHFHH 164 (181)
Q Consensus 153 ~~~Ll~----~aGf~~ 164 (181)
+..++. ++|...
T Consensus 345 ~~~~v~~~~~~~~~~~ 360 (396)
T 2as0_A 345 FKDMIIAAGAKAGKFL 360 (396)
T ss_dssp HHHHHHHHHHHTTEEE
T ss_pred HHHHHHHHHHHcCCeE
Confidence 655544 566544
|
| >1i1n_A Protein-L-isoaspartate O-methyltransferase; S-adenosyl homocysteine, protein repair; HET: SAH; 1.50A {Homo sapiens} SCOP: c.66.1.7 PDB: 1kr5_A* | Back alignment and structure |
|---|
Probab=81.33 E-value=4.4 Score=31.08 Aligned_cols=61 Identities=16% Similarity=0.123 Sum_probs=39.9
Q ss_pred HHHHhhhhhcCCCeEEEec------------C-CCCceEEEeec-hhhhhhhcc-----------CCCceEEecCCCCCC
Q 036440 17 ALKYCKQIFERLGSLVDVG------------A-FPCVKCTEFDQ-PHVVANLLD-----------TNNLKYLADDFFQSI 71 (181)
Q Consensus 17 ~l~~~~~d~~~~~~lvDvG------------~-~P~l~~~~~Dl-P~Vv~~a~~-----------~~ri~~~~gDff~~~ 71 (181)
+++........-.+|+|+| . -|..+.+.+|. |..++.+.. .++++++.+|..+..
T Consensus 67 ~l~~l~~~~~~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~ 146 (226)
T 1i1n_A 67 ALELLFDQLHEGAKALDVGSGSGILTACFARMVGCTGKVIGIDHIKELVDDSVNNVRKDDPTLLSSGRVQLVVGDGRMGY 146 (226)
T ss_dssp HHHHTTTTSCTTCEEEEETCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHCTHHHHTSSEEEEESCGGGCC
T ss_pred HHHHHHhhCCCCCEEEEEcCCcCHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhhcccccCCCcEEEEECCcccCc
Confidence 4444421244557999999 2 36678999998 666655431 358999999987643
Q ss_pred CC---cceE
Q 036440 72 PP---VCMI 77 (181)
Q Consensus 72 P~---~d~~ 77 (181)
+. .|++
T Consensus 147 ~~~~~fD~i 155 (226)
T 1i1n_A 147 AEEAPYDAI 155 (226)
T ss_dssp GGGCCEEEE
T ss_pred ccCCCcCEE
Confidence 32 5777
|
| >3m6w_A RRNA methylase; rRNA methyltransferase, 5-methylcytidine, RSMF, adoMet, MULT specific, methyltransferase, transferase; HET: CXM SAM; 1.30A {Thermus thermophilus} PDB: 3m6v_A* 3m6u_A* 3m6x_A* | Back alignment and structure |
|---|
Probab=81.17 E-value=2.7 Score=38.09 Aligned_cols=118 Identities=11% Similarity=0.000 Sum_probs=72.9
Q ss_pred hhcCCCeEEEecC------------CC-CceEEEeec-hhhhhhhcc------CCCceEEecCCCCC---CCC-cceEec
Q 036440 24 IFERLGSLVDVGA------------FP-CVKCTEFDQ-PHVVANLLD------TNNLKYLADDFFQS---IPP-VCMIPL 79 (181)
Q Consensus 24 d~~~~~~lvDvG~------------~P-~l~~~~~Dl-P~Vv~~a~~------~~ri~~~~gDff~~---~P~-~d~~~~ 79 (181)
+...-.+|+|+|+ .+ ..+.+.+|+ |.-++.+.. -. ++++.+|..+- .+. .|.+++
T Consensus 98 ~~~~g~~VLDlgaGpG~kt~~LA~~~~~~g~V~AvDis~~~l~~a~~n~~r~G~~-v~~~~~Da~~l~~~~~~~FD~Il~ 176 (464)
T 3m6w_A 98 DPKPGERVLDLAAAPGGKTTHLAARMGGKGLLLANEVDGKRVRGLLENVERWGAP-LAVTQAPPRALAEAFGTYFHRVLL 176 (464)
T ss_dssp CCCTTCEEEESSCTTCHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHHCCC-CEEECSCHHHHHHHHCSCEEEEEE
T ss_pred CcCCCCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCe-EEEEECCHHHhhhhccccCCEEEE
Confidence 3455579999992 33 357788887 444443321 23 89999997642 233 688876
Q ss_pred cccchhhhHHhhhhhhhhcCCCccchhhhhhcccccceeeeeeccCChHHH-------HHHHHHHHHHhccCC-------
Q 036440 80 RLGYSHIKIMIAFFIRLVVGRGRLHIFSWLNFMKRVINMQIIIHVFGDEES-------VKILKICREAITSKA------- 145 (181)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~iLHdw~D~~~-------~~iL~~~~~a~~~~g------- 145 (181)
+.-+|+.-.. |. -..+...|..++. .+||+.+...++|||
T Consensus 177 D~PcSg~G~~-----rr---------------------~pd~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpGG~LvysTC 230 (464)
T 3m6w_A 177 DAPCSGEGMF-----RK---------------------DREAARHWGPSAPKRMAEVQKALLAQASRLLGPGGVLVYSTC 230 (464)
T ss_dssp ECCCCCGGGT-----TT---------------------CTTSGGGCCTTHHHHHHHHHHHHHHHHHTTEEEEEEEEEEES
T ss_pred CCCcCCcccc-----cc---------------------ChHHhhhcCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEec
Confidence 6655432110 00 0112223444443 678999999999999
Q ss_pred ---ccCCHHHHHHHHHhC-CCeEEEEE
Q 036440 146 ---KLSTEKELESLFVEV-HFHHYKIT 168 (181)
Q Consensus 146 ---~eRt~~E~~~Ll~~a-Gf~~~~i~ 168 (181)
.+-.++..+.++++. +|+.+.+.
T Consensus 231 s~~~eEne~vv~~~l~~~~~~~l~~~~ 257 (464)
T 3m6w_A 231 TFAPEENEGVVAHFLKAHPEFRLEDAR 257 (464)
T ss_dssp CCCGGGTHHHHHHHHHHCTTEEEECCC
T ss_pred cCchhcCHHHHHHHHHHCCCcEEEecc
Confidence 455777888888887 57766543
|
| >2oxt_A Nucleoside-2'-O-methyltransferase; flavivirus, viral enzyme, RNA capping, S-adenosyl-L-methionine, viral protein; HET: SAM; 2.90A {Meaban virus} | Back alignment and structure |
|---|
Probab=80.73 E-value=3.4 Score=34.09 Aligned_cols=52 Identities=17% Similarity=0.139 Sum_probs=32.4
Q ss_pred hcCCCeEEEecCCCC---------ceEEEeechhhhhhhc--cCC------CceEE--ecCCCCCCCC--cceE
Q 036440 25 FERLGSLVDVGAFPC---------VKCTEFDQPHVVANLL--DTN------NLKYL--ADDFFQSIPP--VCMI 77 (181)
Q Consensus 25 ~~~~~~lvDvG~~P~---------l~~~~~DlP~Vv~~a~--~~~------ri~~~--~gDff~~~P~--~d~~ 77 (181)
+..-.+|||+|.-|+ -+.+.+|+-+....+. ... +++++ .+|+.+ +|. .|++
T Consensus 72 ~~~g~~VLDlGcGtG~~s~~la~~~~V~gvD~s~m~~~a~~~~~~~~~~~~~v~~~~~~~D~~~-l~~~~fD~V 144 (265)
T 2oxt_A 72 VELTGRVVDLGCGRGGWSYYAASRPHVMDVRAYTLGVGGHEVPRITESYGWNIVKFKSRVDIHT-LPVERTDVI 144 (265)
T ss_dssp CCCCEEEEEESCTTSHHHHHHHTSTTEEEEEEECCCCSSCCCCCCCCBTTGGGEEEECSCCTTT-SCCCCCSEE
T ss_pred CCCCCEEEEeCcCCCHHHHHHHHcCcEEEEECchhhhhhhhhhhhhhccCCCeEEEecccCHhH-CCCCCCcEE
Confidence 344578999992222 4678888855432221 111 78999 899986 442 6887
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST 
Original result of RPS-BLAST against SCOP70(version1.75) database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| 181 | ||||
| d1fp2a2 | 244 | c.66.1.12 (A:109-352) Isoflavone O-methyltransfera | 1e-17 | |
| d1fp1d2 | 244 | c.66.1.12 (D:129-372) Chalcone O-methyltransferase | 5e-13 | |
| d1kyza2 | 243 | c.66.1.12 (A:120-362) Caffeic acid/5-hydroxyferuli | 1e-11 | |
| d1qzza2 | 256 | c.66.1.12 (A:102-357) Aclacinomycin-10-hydroxylase | 2e-04 |
| >d1fp2a2 c.66.1.12 (A:109-352) Isoflavone O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} Length = 244 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Isoflavone O-methyltransferase species: Alfalfa (Medicago sativa) [TaxId: 3879]
Score = 75.5 bits (185), Expect = 1e-17
Identities = 62/198 (31%), Positives = 93/198 (46%), Gaps = 26/198 (13%)
Query: 1 FNQAVASDTQTVTASLALKYCKQIFERLGSLVDVG------------AFPCVKCTEFDQP 48
FN A+ASD++ + +LAL+ C +F+ L S+VDVG FP +KC FD+P
Sbjct: 56 FNDAMASDSKLI--NLALRDCDFVFDGLESIVDVGGGTGTTAKIICETFPKLKCIVFDRP 113
Query: 49 HVVANLLDTNNLKYLADDFFQSIPPVCMIPLRLGYSHIKIMIAFFIRLVVGRGRLHIFSW 108
VV NL +NNL Y+ D F SIP + +K ++ + R
Sbjct: 114 QVVENLSGSNNLTYVGGDMFTSIPNADAV-------LLKYILHNWTDKDCLRILKKCKEA 166
Query: 109 LNFMKRVINMQIIIHVFGDEESVKILKICREAI-----TSKAKLSTEKELESLFVEVHFH 163
+ + + II V ++ + + + K E+E + LF+E F
Sbjct: 167 VTNDGKRGKVTIIDMVIDKKKDENQVTQIKLLMDVNMACLNGKERNEEEWKKLFIEAGFQ 226
Query: 164 HYKITPLFGLPSLIEVYP 181
HYKI+PL G SLIE+YP
Sbjct: 227 HYKISPLTGFLSLIEIYP 244
|
| >d1fp1d2 c.66.1.12 (D:129-372) Chalcone O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} Length = 244 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Chalcone O-methyltransferase species: Alfalfa (Medicago sativa) [TaxId: 3879]
Score = 62.8 bits (152), Expect = 5e-13
Identities = 40/199 (20%), Positives = 75/199 (37%), Gaps = 31/199 (15%)
Query: 1 FNQAVASDTQTVTASLALKYCKQIFERLGSLVDVG------------AFPCVKCTEFDQP 48
FN+++ T + Y FE + +LVDVG +P +K FD P
Sbjct: 57 FNKSMVDVCATEMKRMLEIYT--GFEGISTLVDVGGGSGRNLELIISKYPLIKGINFDLP 114
Query: 49 HVVANLLDTNNLKYLADDFFQSIPPVCMIPLR---LGYSHIKIMIAFFIRLVVGRGRLHI 105
V+ N + ++++ D F S+P + L+ +S K + +
Sbjct: 115 QVIENAPPLSGIEHVGGDMFASVPQGDAMILKAVCHNWSDEKCIEFL----------SNC 164
Query: 106 FSWLNFMKRVINMQIIIHVFGDEESVKILKICREAI---TSKAKLSTEKELESLFVEVHF 162
L+ +VI ++ I+ + L + + T + TEK+ E L F
Sbjct: 165 HKALSPNGKVIIVEFILPEEPNTSEESKLVSTLDNLMFITVGGRERTEKQYEKLSKLSGF 224
Query: 163 HHYKIT-PLFGLPSLIEVY 180
+++ F ++E Y
Sbjct: 225 SKFQVACRAFNSLGVMEFY 243
|
| >d1kyza2 c.66.1.12 (A:120-362) Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} Length = 243 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltransferase species: Alfalfa (Medicago sativa) [TaxId: 3879]
Score = 59.1 bits (142), Expect = 1e-11
Identities = 35/190 (18%), Positives = 65/190 (34%), Gaps = 17/190 (8%)
Query: 1 FNQAVASDTQTVTASLALKYCKQIFERLGSLVDVG------------AFPCVKCTEFDQP 48
FN+ ++ + + Y FE L SLVDVG +P +K FD P
Sbjct: 57 FNKGMSDHSTITMKKILETYT--GFEGLKSLVDVGGGTGAVINTIVSKYPTIKGINFDLP 114
Query: 49 HVVANLLDTNNLKYLADDFFQSIPPVCMIPLRLGYSHIKIMIAFFIRLVVGRGRLHIFSW 108
HV+ + ++++ D F SIP + ++
Sbjct: 115 HVIEDAPSYPGVEHVGGDMFVSIPKADAVFMKWICHDWSDEHCLKFLKNCYEALPDNG-K 173
Query: 109 LNFMKRVINMQIIIHVFGDEESVKILKICREAITSKAKLSTEKELESLFVEVHFHHYKIT 168
+ + ++ + + + V + + A K T+KE E L F +K+
Sbjct: 174 VIVAECILPVAPDSSL--ATKGVVHIDVIMLAHNPGGKERTQKEFEDLAKGAGFQGFKVH 231
Query: 169 PLFGLPSLIE 178
++E
Sbjct: 232 CNAFNTYIME 241
|
| >d1qzza2 c.66.1.12 (A:102-357) Aclacinomycin-10-hydroxylase RdmB {Streptomyces purpurascens [TaxId: 1924]} Length = 256 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Aclacinomycin-10-hydroxylase RdmB species: Streptomyces purpurascens [TaxId: 1924]
Score = 38.4 bits (88), Expect = 2e-04
Identities = 21/206 (10%), Positives = 44/206 (21%), Gaps = 34/206 (16%)
Query: 1 FNQAVASDTQTVTASLALKYCKQIFERLGSLVDVG------------AFPCVKCTEFDQP 48
F+ ++ D + + + ++DVG P ++ T +
Sbjct: 58 FDALMSCDEDLAYEAP-ADAYD--WSAVRHVLDVGGGNGGMLAAIALRAPHLRGTLVELA 114
Query: 49 HVVANLLDTNNLKYLADDFFQSIPPVCMIPLRLGYSHIKIMIAFFIRLVVGRGRLHIFSW 108
LAD + + + +
Sbjct: 115 GPAERARRRFADAGLADRVTVAEGDFFKPLPVTADVVLLSFVLLNWS------DEDALTI 168
Query: 109 LNFMKRVINMQIIIHVF--------GDEESVKILKICREAITSKAKLSTEKELESLFVEV 160
L R + + V G + L R ++ T E+ L
Sbjct: 169 LRGCVRALEPGGRLLVLDRADVEGDGADRFFSTLLDLRMLTFMGGRVRTRDEVVDLAGSA 228
Query: 161 HFHHYKITPLFGLP-----SLIEVYP 181
S++E
Sbjct: 229 GLALASERTSGSTTLPFDFSILEFTA 254
|
Homologous Domains Detected by HHsearch 
Original result of HHsearch against SCOP70(version1.75) database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 181 | |||
| d1fp2a2 | 244 | Isoflavone O-methyltransferase {Alfalfa (Medicago | 100.0 | |
| d1fp1d2 | 244 | Chalcone O-methyltransferase {Alfalfa (Medicago sa | 100.0 | |
| d1kyza2 | 243 | Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltra | 100.0 | |
| d1qzza2 | 256 | Aclacinomycin-10-hydroxylase RdmB {Streptomyces pu | 99.96 | |
| d1tw3a2 | 253 | Carminomycin 4-O-methyltransferase {Streptomyces p | 99.94 | |
| d1im8a_ | 225 | Hypothetical protein HI0319 (YecO) {Haemophilus in | 99.07 | |
| d2ex4a1 | 222 | Adrenal gland protein AD-003 (C9orf32) {Human (Hom | 98.93 | |
| d1xtpa_ | 254 | Hypothetical protein Lmaj004091aaa (LmjF30.0810) { | 98.88 | |
| d2o57a1 | 282 | Putative sarcosine dimethylglycine methyltransfera | 98.71 | |
| d1vl5a_ | 231 | Hypothetical protein BH2331 {Bacillus halodurans [ | 98.65 | |
| d1nkva_ | 245 | Hypothetical Protein YjhP {Escherichia coli [TaxId | 98.46 | |
| d1vlma_ | 208 | Possible histamine N-methyltransferase TM1293 {The | 98.44 | |
| d1xxla_ | 234 | Hypothetical protein YcgJ {Bacillus subtilis [TaxI | 98.35 | |
| d1wzna1 | 251 | Hypothetical methyltransferase PH1305 {Archaeon Py | 98.24 | |
| d2p7ia1 | 225 | Hypothetical protein ECA1738 {Erwinia carotovora [ | 98.24 | |
| d1y8ca_ | 246 | Putative methyltransferase CAC2371 {Clostridium ac | 98.06 | |
| d2gh1a1 | 281 | Methyltransferase BC2162 {Bacillus cereus [TaxId: | 97.97 | |
| d2fk8a1 | 280 | Methoxy mycolic acid synthase 4, Mma4 {Mycobacteri | 97.78 | |
| d2i6ga1 | 198 | Putative methyltransferase TehB {Salmonella typhim | 97.76 | |
| d1dusa_ | 194 | Hypothetical protein MJ0882 {Archaeon Methanococcu | 97.68 | |
| d1ri5a_ | 252 | mRNA cap (Guanine N-7) methyltransferase {Fungus ( | 97.63 | |
| d2a14a1 | 257 | Indolethylamine N-methyltransferase, INMT {Human ( | 97.59 | |
| d1ve3a1 | 226 | Hypothetical protein PH0226 {Archaeon Pyrococcus h | 97.55 | |
| d1pjza_ | 201 | Thiopurine S-methyltransferase {Pseudomonas syring | 97.5 | |
| d1g8sa_ | 230 | Fibrillarin homologue {Archaeon Methanococcus jann | 97.45 | |
| d2bzga1 | 229 | Thiopurine S-methyltransferase {Human (Homo sapien | 97.37 | |
| d1kpga_ | 285 | CmaA1 {Mycobacterium tuberculosis [TaxId: 1773]} | 97.3 | |
| d2g72a1 | 263 | Phenylethanolamine N-methyltransferase, PNMTase {H | 97.2 | |
| d2nxca1 | 254 | PrmA-like protein TTHA0656 (TT0836) {Thermus therm | 97.12 | |
| d1jqea_ | 280 | Histamine methyltransferase {Human (Homo sapiens) | 97.0 | |
| d1kpia_ | 291 | CmaA2 {Mycobacterium tuberculosis [TaxId: 1773]} | 96.93 | |
| d1o54a_ | 266 | Hypothetical protein TM0748 {Thermotoga maritima [ | 96.67 | |
| d2b3ta1 | 274 | N5-glutamine methyltransferase, HemK {Escherichia | 96.66 | |
| d1zx0a1 | 229 | Guanidinoacetate methyltransferase {Human (Homo sa | 96.5 | |
| d1nt2a_ | 209 | Fibrillarin homologue {Archaeon Archaeoglobus fulg | 96.28 | |
| d2avna1 | 246 | Hypothetical methyltransferase TM1389 {Thermotoga | 96.09 | |
| d1xvaa_ | 292 | Glycine N-methyltransferase {Rat (Rattus norvegicu | 95.95 | |
| d1l3ia_ | 186 | Precorrin-6Y methyltransferase (CbiT) {Archaeon Me | 95.75 | |
| d1yb2a1 | 250 | Hypothetical protein Ta0852 {Thermoplasma acidophi | 95.67 | |
| d2uyoa1 | 297 | Putative methyltransferase ML2640 {Mycobacterium l | 95.44 | |
| d1p91a_ | 268 | rRNA methyltransferase RlmA {Escherichia coli [Tax | 95.14 | |
| d1nw3a_ | 328 | Catalytic, N-terminal domain of histone methyltran | 94.85 | |
| d2fcaa1 | 204 | tRNA (guanine-N(7)-)-methyltransferase TrmB {Bacil | 93.24 | |
| d1af7a2 | 193 | Chemotaxis receptor methyltransferase CheR, C-term | 93.14 | |
| d1i9ga_ | 264 | Probable methyltransferase Rv2118c {Mycobacterium | 92.79 | |
| d2frna1 | 260 | Hypothetical protein PH0793 {Pyrococcus horikoshii | 92.67 | |
| d1yzha1 | 204 | tRNA (guanine-N(7)-)-methyltransferase TrmB {Strep | 92.43 | |
| d1g8aa_ | 227 | Fibrillarin homologue {Archaeon Pyrococcus horikos | 92.19 | |
| d1mjfa_ | 276 | Putative spermidine synthetase PF0127 (SpeE) {Arch | 92.1 | |
| d1dl5a1 | 213 | Protein-L-isoaspartyl O-methyltransferase {Thermot | 91.03 | |
| d1m6ya2 | 192 | TM0872, methyltransferase domain {Thermotoga marit | 91.0 | |
| d2b25a1 | 324 | Hypothetical protein FLJ20628 {Human (Homo sapiens | 90.87 | |
| d1nv8a_ | 271 | N5-glutamine methyltransferase, HemK {Thermotoga m | 89.88 | |
| d1u2za_ | 406 | Catalytic, N-terminal domain of histone methyltran | 89.81 | |
| d2h00a1 | 250 | Methyltransferase 10 domain containing protein MET | 89.61 | |
| d1oria_ | 316 | Protein arginine N-methyltransferase 1, PRMT1 {Rat | 89.39 | |
| d1uira_ | 312 | Spermidine synthase {Thermus thermophilus [TaxId: | 88.77 | |
| d1g6q1_ | 328 | Arginine methyltransferase, HMT1 {Baker's yeast (S | 87.66 | |
| d1i1na_ | 224 | Protein-L-isoaspartyl O-methyltransferase {Human ( | 86.13 | |
| d1iy9a_ | 274 | Spermidine synthase {Bacillus subtilis [TaxId: 142 | 85.5 | |
| d2o07a1 | 285 | Spermidine synthase {Human (Homo sapiens) [TaxId: | 84.38 | |
| d2b2ca1 | 312 | Spermidine synthase {Caenorhabditis elegans [TaxId | 82.3 | |
| d2fyta1 | 311 | Protein arginine N-methyltransferase 3, PRMT3 {Hum | 81.48 |
| >d1fp2a2 c.66.1.12 (A:109-352) Isoflavone O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Isoflavone O-methyltransferase species: Alfalfa (Medicago sativa) [TaxId: 3879]
Probab=100.00 E-value=1.8e-36 Score=252.83 Aligned_cols=140 Identities=45% Similarity=0.805 Sum_probs=130.6
Q ss_pred ChHHHhhccccchhHHHHHHhhhhhcCCCeEEEec------------CCCCceEEEeechhhhhhhccCCCceEEecCCC
Q 036440 1 FNQAVASDTQTVTASLALKYCKQIFERLGSLVDVG------------AFPCVKCTEFDQPHVVANLLDTNNLKYLADDFF 68 (181)
Q Consensus 1 F~~aM~~~s~~~~~~~~l~~~~~d~~~~~~lvDvG------------~~P~l~~~~~DlP~Vv~~a~~~~ri~~~~gDff 68 (181)
|+++|++.+.... ..+.+. .++|++.++||||| +||+++++++|+|+|++.+...+||++++||||
T Consensus 56 F~~aM~~~s~~~~-~~~~~~-~~~~~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dlp~vi~~~~~~~rv~~~~gD~f 133 (244)
T d1fp2a2 56 FNDAMASDSKLIN-LALRDC-DFVFDGLESIVDVGGGTGTTAKIICETFPKLKCIVFDRPQVVENLSGSNNLTYVGGDMF 133 (244)
T ss_dssp HHHHHHHTHHHHH-HHHHTC-HHHHTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEECHHHHTTCCCBTTEEEEECCTT
T ss_pred HHHHhhhhhhhhh-hhHhhh-cccccCceEEEEecCCccHHHHHHHHhCCCCeEEEecCHHHHHhCcccCceEEEecCcc
Confidence 7899998888766 555543 23899999999999 999999999999999999999999999999999
Q ss_pred CCCCCcceEeccccchhhhHHhhhhhhhhcCCCccchhhhhhcccccceeeeeeccCChHHHHHHHHHHHHHhccCC---
Q 036440 69 QSIPPVCMIPLRLGYSHIKIMIAFFIRLVVGRGRLHIFSWLNFMKRVINMQIIIHVFGDEESVKILKICREAITSKA--- 145 (181)
Q Consensus 69 ~~~P~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~iLHdw~D~~~~~iL~~~~~a~~~~g--- 145 (181)
+++|.+|+| ++++|||||+|++|++||++|++||+|+|
T Consensus 134 ~~~p~aD~~---------------------------------------~l~~vLHdw~d~~~~~iL~~~~~al~pgg~~~ 174 (244)
T d1fp2a2 134 TSIPNADAV---------------------------------------LLKYILHNWTDKDCLRILKKCKEAVTNDGKRG 174 (244)
T ss_dssp TCCCCCSEE---------------------------------------EEESCGGGSCHHHHHHHHHHHHHHHSGGGCCC
T ss_pred cCCCCCcEE---------------------------------------EEEeecccCChHHHHHHHHHHHHHcCcccCCc
Confidence 999999999 99999999999999999999999999983
Q ss_pred ----------------------------------ccCCHHHHHHHHHhCCCeEEEEEEcCCCCeEEEEEC
Q 036440 146 ----------------------------------KLSTEKELESLFVEVHFHHYKITPLFGLPSLIEVYP 181 (181)
Q Consensus 146 ----------------------------------~eRt~~E~~~Ll~~aGf~~~~i~~~~~~~~viE~~~ 181 (181)
|+||.+||++||++|||++++++|++|..||||+||
T Consensus 175 ~lli~e~~~~~~~~~~~~~~~~~~~dl~m~~~~G~ert~~e~~~ll~~AGf~~~~i~~~~~~~svIE~~p 244 (244)
T d1fp2a2 175 KVTIIDMVIDKKKDENQVTQIKLLMDVNMACLNGKERNEEEWKKLFIEAGFQHYKISPLTGFLSLIEIYP 244 (244)
T ss_dssp EEEEEECEECTTTSCHHHHHHHHHHHHHGGGGTCCCEEHHHHHHHHHHTTCCEEEEEEEETTEEEEEEEC
T ss_pred EEEEEEeecCCCCCCchHHHHHHHHHHHHHhCCCcCCCHHHHHHHHHHcCCceEEEEECCCCeEEEEEeC
Confidence 899999999999999999999999999999999998
|
| >d1fp1d2 c.66.1.12 (D:129-372) Chalcone O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Chalcone O-methyltransferase species: Alfalfa (Medicago sativa) [TaxId: 3879]
Probab=100.00 E-value=2.7e-35 Score=245.99 Aligned_cols=140 Identities=26% Similarity=0.475 Sum_probs=132.2
Q ss_pred ChHHHhhccccchhHHHHHHhhhhhcCCCeEEEec------------CCCCceEEEeechhhhhhhccCCCceEEecCCC
Q 036440 1 FNQAVASDTQTVTASLALKYCKQIFERLGSLVDVG------------AFPCVKCTEFDQPHVVANLLDTNNLKYLADDFF 68 (181)
Q Consensus 1 F~~aM~~~s~~~~~~~~l~~~~~d~~~~~~lvDvG------------~~P~l~~~~~DlP~Vv~~a~~~~ri~~~~gDff 68 (181)
|++||.+.+.... +.+++.|+ .|++.++||||| +||+++++++|+|+|++.+...+||++++||||
T Consensus 57 F~~aM~~~s~~~~-~~l~~~~~-~f~~~~~vlDiGGG~G~~~~~l~~~~P~l~~~v~Dlp~vi~~~~~~~ri~~~~gd~~ 134 (244)
T d1fp1d2 57 FNKSMVDVCATEM-KRMLEIYT-GFEGISTLVDVGGGSGRNLELIISKYPLIKGINFDLPQVIENAPPLSGIEHVGGDMF 134 (244)
T ss_dssp HHHHHHHHHHHHH-HHHHHHCC-TTTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEECHHHHTTCCCCTTEEEEECCTT
T ss_pred HHHHHHHHHHHHH-HHHHHhcc-cccCCcEEEEecCCCcHHHHHHHHHCCCCeEEEecchhhhhccCCCCCeEEecCCcc
Confidence 7899999988887 89999994 499999999999 999999999999999999999999999999999
Q ss_pred CCCCCcceEeccccchhhhHHhhhhhhhhcCCCccchhhhhhcccccceeeeeeccCChHHHHHHHHHHHHHhccCC---
Q 036440 69 QSIPPVCMIPLRLGYSHIKIMIAFFIRLVVGRGRLHIFSWLNFMKRVINMQIIIHVFGDEESVKILKICREAITSKA--- 145 (181)
Q Consensus 69 ~~~P~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~iLHdw~D~~~~~iL~~~~~a~~~~g--- 145 (181)
+++|.+|+| +|++|||||+|++|++||+++++||+|||
T Consensus 135 ~~~p~~D~~---------------------------------------~l~~vLh~~~de~~~~iL~~~~~aL~pgg~ll 175 (244)
T d1fp1d2 135 ASVPQGDAM---------------------------------------ILKAVCHNWSDEKCIEFLSNCHKALSPNGKVI 175 (244)
T ss_dssp TCCCCEEEE---------------------------------------EEESSGGGSCHHHHHHHHHHHHHHEEEEEEEE
T ss_pred cccccceEE---------------------------------------EEehhhhhCCHHHHHHHHHHHHHHcCCCcEEE
Confidence 999999999 99999999999999999999999999988
Q ss_pred --------------------------------ccCCHHHHHHHHHhCCCeEEEEEEc-CCCCeEEEEEC
Q 036440 146 --------------------------------KLSTEKELESLFVEVHFHHYKITPL-FGLPSLIEVYP 181 (181)
Q Consensus 146 --------------------------------~eRt~~E~~~Ll~~aGf~~~~i~~~-~~~~~viE~~~ 181 (181)
|+||.+||++||++|||+.++|++. .+..+|||++|
T Consensus 176 I~e~v~~~~~~~~~~~~~~~~~d~~m~~~~~g~ert~~e~~~ll~~AGF~~v~v~~~~~~~~~viE~~K 244 (244)
T d1fp1d2 176 IVEFILPEEPNTSEESKLVSTLDNLMFITVGGRERTEKQYEKLSKLSGFSKFQVACRAFNSLGVMEFYK 244 (244)
T ss_dssp EEEEEECSSCCSSHHHHHHHHHHHHHHHHHSCCCEEHHHHHHHHHHTTCSEEEEEEEETTTEEEEEEEC
T ss_pred EEEEEecCCCCCchHHHHHHHHHHHHHhhCCCcCCCHHHHHHHHHHcCCCceEEEecCCCCEEEEEEeC
Confidence 8999999999999999999999854 56789999987
|
| >d1kyza2 c.66.1.12 (A:120-362) Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltransferase species: Alfalfa (Medicago sativa) [TaxId: 3879]
Probab=100.00 E-value=3.3e-33 Score=231.29 Aligned_cols=139 Identities=32% Similarity=0.467 Sum_probs=131.1
Q ss_pred ChHHHhhccccchhHHHHHHhhhhhcCCCeEEEec------------CCCCceEEEeechhhhhhhccCCCceEEecCCC
Q 036440 1 FNQAVASDTQTVTASLALKYCKQIFERLGSLVDVG------------AFPCVKCTEFDQPHVVANLLDTNNLKYLADDFF 68 (181)
Q Consensus 1 F~~aM~~~s~~~~~~~~l~~~~~d~~~~~~lvDvG------------~~P~l~~~~~DlP~Vv~~a~~~~ri~~~~gDff 68 (181)
|+++|++.+.... +.+++.|+ .+++.++||||| +||+++++++|+|+|++.+...+|++++++|||
T Consensus 57 F~~aM~~~~~~~~-~~~~~~~~-~~~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dlp~vi~~~~~~~r~~~~~~d~~ 134 (243)
T d1kyza2 57 FNKGMSDHSTITM-KKILETYT-GFEGLKSLVDVGGGTGAVINTIVSKYPTIKGINFDLPHVIEDAPSYPGVEHVGGDMF 134 (243)
T ss_dssp HHHHHHHHHHHHH-HHHHHHCC-TTSSCSEEEEETCTTSHHHHHHHHHCTTSEEEEEECTTTTTTCCCCTTEEEEECCTT
T ss_pred HHHHHhHhhhhHH-HHHHHhcc-cccCCcEEEEecCCCcHHHHHHHHHCCCCeEEEcccHHhhhhcccCCceEEeccccc
Confidence 7899999888877 89999994 357799999999 999999999999999999999999999999999
Q ss_pred CCCCCcceEeccccchhhhHHhhhhhhhhcCCCccchhhhhhcccccceeeeeeccCChHHHHHHHHHHHHHhccCC---
Q 036440 69 QSIPPVCMIPLRLGYSHIKIMIAFFIRLVVGRGRLHIFSWLNFMKRVINMQIIIHVFGDEESVKILKICREAITSKA--- 145 (181)
Q Consensus 69 ~~~P~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~iLHdw~D~~~~~iL~~~~~a~~~~g--- 145 (181)
+++|.+|.| ++++|||+|+|++|++||+++++||+|+|
T Consensus 135 ~~~P~ad~~---------------------------------------~l~~vlh~~~d~~~~~iL~~~~~al~pgg~~l 175 (243)
T d1kyza2 135 VSIPKADAV---------------------------------------FMKWICHDWSDEHCLKFLKNCYEALPDNGKVI 175 (243)
T ss_dssp TCCCCCSCE---------------------------------------ECSSSSTTSCHHHHHHHHHHHHHHCCSSSCEE
T ss_pred ccCCCcceE---------------------------------------EEEEEeecCCHHHHHHHHHHHHHhcCCCceEE
Confidence 999999999 99999999999999999999999999999
Q ss_pred ---------------------------------ccCCHHHHHHHHHhCCCeEEEEEEcCCCCeEEEEE
Q 036440 146 ---------------------------------KLSTEKELESLFVEVHFHHYKITPLFGLPSLIEVY 180 (181)
Q Consensus 146 ---------------------------------~eRt~~E~~~Ll~~aGf~~~~i~~~~~~~~viE~~ 180 (181)
++||.+||++||++|||+.++|++.++..+|||.+
T Consensus 176 i~d~~~~~~~~~~~~~~~~~~~d~~ml~~~~~g~ert~~e~~~ll~~AGf~~vkv~~~~~~~~viE~~ 243 (243)
T d1kyza2 176 VAECILPVAPDSSLATKGVVHIDVIMLAHNPGGKERTQKEFEDLAKGAGFQGFKVHCNAFNTYIMEFL 243 (243)
T ss_dssp EEECEECSSCCCCHHHHHHHHHHHHHHHHCSSCCCEEHHHHHHHHHHHCCSCEEEEEEETTEEEEEEC
T ss_pred EEEEEecCCCCCchhhHHHHHHHHHHHhhCCCCCcCCHHHHHHHHHHcCCCcEEEEEeCCCCEEEEeC
Confidence 89999999999999999999999998889999963
|
| >d1qzza2 c.66.1.12 (A:102-357) Aclacinomycin-10-hydroxylase RdmB {Streptomyces purpurascens [TaxId: 1924]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Aclacinomycin-10-hydroxylase RdmB species: Streptomyces purpurascens [TaxId: 1924]
Probab=99.96 E-value=4.1e-29 Score=207.33 Aligned_cols=139 Identities=16% Similarity=0.243 Sum_probs=128.0
Q ss_pred ChHHHhhccccchhHHHHHHhhhhhcCCCeEEEec------------CCCCceEEEeechhhhhhhc-------cCCCce
Q 036440 1 FNQAVASDTQTVTASLALKYCKQIFERLGSLVDVG------------AFPCVKCTEFDQPHVVANLL-------DTNNLK 61 (181)
Q Consensus 1 F~~aM~~~s~~~~~~~~l~~~~~d~~~~~~lvDvG------------~~P~l~~~~~DlP~Vv~~a~-------~~~ri~ 61 (181)
|+++|.+.+.... +.+++.| ||++.++||||| +||+++++++|+|++++.++ ..+|++
T Consensus 58 f~~~m~~~~~~~~-~~~~~~~--d~~~~~~vlDvG~G~G~~~~~l~~~~P~~~~~~~Dlp~~~~~a~~~~~~~~~~~ri~ 134 (256)
T d1qzza2 58 FDALMSCDEDLAY-EAPADAY--DWSAVRHVLDVGGGNGGMLAAIALRAPHLRGTLVELAGPAERARRRFADAGLADRVT 134 (256)
T ss_dssp HHHTCGGGSTTTT-HHHHHTS--CCTTCCEEEEETCTTSHHHHHHHHHCTTCEEEEEECHHHHHHHHHHHHHTTCTTTEE
T ss_pred HHHHHHhhHHHHH-HHHHhcC--CCccCCEEEEECCCCCHHHHHHHHhhcCcEEEEecChHHHHHHHHHHhhcCCcceee
Confidence 6889999888887 9999999 899999999999 99999999999999987664 378999
Q ss_pred EEecCCCCCCCC-cceEeccccchhhhHHhhhhhhhhcCCCccchhhhhhcccccceeeeeeccCChHHHHHHHHHHHHH
Q 036440 62 YLADDFFQSIPP-VCMIPLRLGYSHIKIMIAFFIRLVVGRGRLHIFSWLNFMKRVINMQIIIHVFGDEESVKILKICREA 140 (181)
Q Consensus 62 ~~~gDff~~~P~-~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~iLHdw~D~~~~~iL~~~~~a 140 (181)
++++|+|+++|. +|+| +++++||+|+|++|++||++++++
T Consensus 135 ~~~~d~~~~~p~~~D~v---------------------------------------~~~~vLh~~~d~~~~~lL~~i~~~ 175 (256)
T d1qzza2 135 VAEGDFFKPLPVTADVV---------------------------------------LLSFVLLNWSDEDALTILRGCVRA 175 (256)
T ss_dssp EEECCTTSCCSCCEEEE---------------------------------------EEESCGGGSCHHHHHHHHHHHHHH
T ss_pred eeeeeccccccccchhh---------------------------------------hccccccccCcHHHHHHHHHHHhh
Confidence 999999999886 7999 999999999999999999999999
Q ss_pred hccCC---------------------------------ccCCHHHHHHHHHhCCCeEEEEEEcCCC-----CeEEEEEC
Q 036440 141 ITSKA---------------------------------KLSTEKELESLFVEVHFHHYKITPLFGL-----PSLIEVYP 181 (181)
Q Consensus 141 ~~~~g---------------------------------~eRt~~E~~~Ll~~aGf~~~~i~~~~~~-----~~viE~~~ 181 (181)
|+||| ++||.+||++||++|||+++++++.++. .+|||+.|
T Consensus 176 LkpgG~llI~d~~~~~~~~~~~~~~~~~d~~ml~~~~g~~rt~~e~~~ll~~AGf~~~~~~~~~~~~~~~~~~v~E~~~ 254 (256)
T d1qzza2 176 LEPGGRLLVLDRADVEGDGADRFFSTLLDLRMLTFMGGRVRTRDEVVDLAGSAGLALASERTSGSTTLPFDFSILEFTA 254 (256)
T ss_dssp EEEEEEEEEEECCH-------HHHHHHHHHHHHHHHSCCCCCHHHHHHHHHTTTEEEEEEEEECCSSCSSCEEEEEEEE
T ss_pred cCCcceeEEEEeccCCCCcccHHHHHHHHHHHHhhCCCccCCHHHHHHHHHHCCCceeEEEEeCCcCccCceEEEEEEe
Confidence 99999 8899999999999999999999887653 49999975
|
| >d1tw3a2 c.66.1.12 (A:99-351) Carminomycin 4-O-methyltransferase {Streptomyces peucetius [TaxId: 1950]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Carminomycin 4-O-methyltransferase species: Streptomyces peucetius [TaxId: 1950]
Probab=99.94 E-value=1.4e-26 Score=190.02 Aligned_cols=139 Identities=21% Similarity=0.339 Sum_probs=125.5
Q ss_pred ChHHHhhccccchhHHHHHHhhhhhcCCCeEEEec------------CCCCceEEEeechhhhhhhc-------cCCCce
Q 036440 1 FNQAVASDTQTVTASLALKYCKQIFERLGSLVDVG------------AFPCVKCTEFDQPHVVANLL-------DTNNLK 61 (181)
Q Consensus 1 F~~aM~~~s~~~~~~~~l~~~~~d~~~~~~lvDvG------------~~P~l~~~~~DlP~Vv~~a~-------~~~ri~ 61 (181)
|+++|++.+.... +.+++.| ||++.++||||| +||+++++++|+|++++.+. ..+|++
T Consensus 57 f~~~m~~~~~~~~-~~~~~~~--d~~~~~~VLDvGcG~G~~~~~la~~~p~~~~~~~D~~~~~~~a~~~~~~~~~~~rv~ 133 (253)
T d1tw3a2 57 FDSLLACDQDVAF-DAPAAAY--DWTNVRHVLDVGGGKGGFAAAIARRAPHVSATVLEMAGTVDTARSYLKDEGLSDRVD 133 (253)
T ss_dssp HHHHHTTTTTTTT-HHHHHHS--CCTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEECTTHHHHHHHHHHHTTCTTTEE
T ss_pred HHHHHHHhHHHHH-HHHHhhc--CCccCCEEEEeCCCCCHHHHHHHHhcceeEEEEccCHHHHHHHHHHHHHhhcccchh
Confidence 6789998888877 9999999 899999999999 99999999999999887664 368999
Q ss_pred EEecCCCCCCCC-cceEeccccchhhhHHhhhhhhhhcCCCccchhhhhhcccccceeeeeeccCChHHHHHHHHHHHHH
Q 036440 62 YLADDFFQSIPP-VCMIPLRLGYSHIKIMIAFFIRLVVGRGRLHIFSWLNFMKRVINMQIIIHVFGDEESVKILKICREA 140 (181)
Q Consensus 62 ~~~gDff~~~P~-~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~iLHdw~D~~~~~iL~~~~~a 140 (181)
++.+|+|+.+|. +|+| +++++||+|+|+++.++|++++++
T Consensus 134 ~~~~D~~~~~~~~~D~v---------------------------------------~~~~vlh~~~d~~~~~~L~~~~~~ 174 (253)
T d1tw3a2 134 VVEGDFFEPLPRKADAI---------------------------------------ILSFVLLNWPDHDAVRILTRCAEA 174 (253)
T ss_dssp EEECCTTSCCSSCEEEE---------------------------------------EEESCGGGSCHHHHHHHHHHHHHT
T ss_pred hccccchhhcccchhhe---------------------------------------eeccccccCCchhhHHHHHHHHHh
Confidence 999999998876 7999 999999999999999999999999
Q ss_pred hccCC--------------------------------ccCCHHHHHHHHHhCCCeEEEEEEcCCC-----CeEEEEEC
Q 036440 141 ITSKA--------------------------------KLSTEKELESLFVEVHFHHYKITPLFGL-----PSLIEVYP 181 (181)
Q Consensus 141 ~~~~g--------------------------------~eRt~~E~~~Ll~~aGf~~~~i~~~~~~-----~~viE~~~ 181 (181)
|+||| ++||.+||++||++|||+++++.++++. .++|+..|
T Consensus 175 LkPGG~l~i~e~~~~~~~~~~~~~~~~dl~~~~~~~g~~rt~~e~~~ll~~AGf~~~~v~~~~~p~~~~~~~li~~~P 252 (253)
T d1tw3a2 175 LEPGGRILIHERDDLHENSFNEQFTELDLRMLVFLGGALRTREKWDGLAASAGLVVEEVRQLPSPTIPYDLSLLVLAP 252 (253)
T ss_dssp EEEEEEEEEEECCBCGGGCCSHHHHHHHHHHHHHHSCCCCBHHHHHHHHHHTTEEEEEEEEEECSSSSCEEEEEEEEE
T ss_pred cCCCcEEEEEeccCCCCCcchhHHHHhhHHHHhhCCCcCCCHHHHHHHHHHCCCeEEEEEECCCCCCCccEEEEEEec
Confidence 99999 7899999999999999999998866542 37888776
|
| >d1im8a_ c.66.1.14 (A:) Hypothetical protein HI0319 (YecO) {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Hypothetical protein HI0319 (YecO) domain: Hypothetical protein HI0319 (YecO) species: Haemophilus influenzae [TaxId: 727]
Probab=99.07 E-value=1e-09 Score=86.22 Aligned_cols=105 Identities=15% Similarity=0.243 Sum_probs=87.8
Q ss_pred hcCCCeEEEec--------------CCCCceEEEeec-hhhhhhhc-------cCCCceEEecCCCCC-CCCcceEeccc
Q 036440 25 FERLGSLVDVG--------------AFPCVKCTEFDQ-PHVVANLL-------DTNNLKYLADDFFQS-IPPVCMIPLRL 81 (181)
Q Consensus 25 ~~~~~~lvDvG--------------~~P~l~~~~~Dl-P~Vv~~a~-------~~~ri~~~~gDff~~-~P~~d~~~~~~ 81 (181)
...-.+|||+| .+|+.+.+.+|+ |..++.|+ ...++++..+|+.+- .+..|.+
T Consensus 37 ~~~~~~vLDlGCGtG~~~~~l~~~~~~~~~~v~giD~S~~ml~~A~~~~~~~~~~~~~~~~~~d~~~~~~~~~d~i---- 112 (225)
T d1im8a_ 37 VTADSNVYDLGCSRGAATLSARRNINQPNVKIIGIDNSQPMVERCRQHIAAYHSEIPVEILCNDIRHVEIKNASMV---- 112 (225)
T ss_dssp CCTTCEEEEESCTTCHHHHHHHHTCCCSSCEEEEECSCHHHHHHHHHHHHTSCCSSCEEEECSCTTTCCCCSEEEE----
T ss_pred cCCCCEEEEeccchhhHHHHHHHhhcCCCCceEEeCCCHHHHHHHHHHhHhhcccchhhhccchhhccccccceee----
Confidence 44557899999 369999999999 78887764 256788888888753 3346777
Q ss_pred cchhhhHHhhhhhhhhcCCCccchhhhhhcccccceeeeeeccCChHHHHHHHHHHHHHhccCC----------------
Q 036440 82 GYSHIKIMIAFFIRLVVGRGRLHIFSWLNFMKRVINMQIIIHVFGDEESVKILKICREAITSKA---------------- 145 (181)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~iLHdw~D~~~~~iL~~~~~a~~~~g---------------- 145 (181)
++..++|.+++++..++|+++++.|+|||
T Consensus 113 -----------------------------------~~~~~l~~~~~~d~~~~l~~i~~~LkpgG~li~~~~~~~~~~~~~ 157 (225)
T d1im8a_ 113 -----------------------------------ILNFTLQFLPPEDRIALLTKIYEGLNPNGVLVLSEKFRFEDTKIN 157 (225)
T ss_dssp -----------------------------------EEESCGGGSCGGGHHHHHHHHHHHEEEEEEEEEEEECCCSSHHHH
T ss_pred -----------------------------------EEeeeccccChhhHHHHHHHHHHhCCCCceeecccccccccchhh
Confidence 78889999999999999999999999999
Q ss_pred --------------------------------ccCCHHHHHHHHHhCCCeEEEEE
Q 036440 146 --------------------------------KLSTEKELESLFVEVHFHHYKIT 168 (181)
Q Consensus 146 --------------------------------~eRt~~E~~~Ll~~aGf~~~~i~ 168 (181)
+..|.+|++.+|++|||+.++++
T Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~L~~aGF~~v~~~ 212 (225)
T d1im8a_ 158 HLLIDLHHQFKRANGYSELEVSQKRTALENVMRTDSIETHKVRLKNVGFSQVELW 212 (225)
T ss_dssp HHHHHHHHHHHHHTTGGGSTTHHHHHHHHHHCCCCCHHHHHHHHHHHTCSEEEEE
T ss_pred hHHHHHHHHHHHHcCCCHHHHHHHHHHhhcccCCCCHHHHHHHHHHcCCCceEEe
Confidence 23688999999999999999886
|
| >d2ex4a1 c.66.1.42 (A:2-224) Adrenal gland protein AD-003 (C9orf32) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: AD-003 protein-like domain: Adrenal gland protein AD-003 (C9orf32) species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.93 E-value=3e-09 Score=83.50 Aligned_cols=108 Identities=11% Similarity=0.130 Sum_probs=87.5
Q ss_pred cCCCeEEEec------------CCCCceEEEeec-hhhhhhhcc------CCCceEEecCCCCC-CCC--cceEeccccc
Q 036440 26 ERLGSLVDVG------------AFPCVKCTEFDQ-PHVVANLLD------TNNLKYLADDFFQS-IPP--VCMIPLRLGY 83 (181)
Q Consensus 26 ~~~~~lvDvG------------~~P~l~~~~~Dl-P~Vv~~a~~------~~ri~~~~gDff~~-~P~--~d~~~~~~~~ 83 (181)
....+||||| .++ -+.+.+|+ |..++.|+. ..+++++.+|+.+- .+. .|++
T Consensus 59 ~~~~~vLDiGcG~G~~~~~l~~~~~-~~v~~vD~s~~~l~~ak~~~~~~~~~~~~f~~~d~~~~~~~~~~fD~I------ 131 (222)
T d2ex4a1 59 TGTSCALDCGAGIGRITKRLLLPLF-REVDMVDITEDFLVQAKTYLGEEGKRVRNYFCCGLQDFTPEPDSYDVI------ 131 (222)
T ss_dssp CCCSEEEEETCTTTHHHHHTTTTTC-SEEEEEESCHHHHHHHHHHTGGGGGGEEEEEECCGGGCCCCSSCEEEE------
T ss_pred CCCCEEEEeccCCCHhhHHHHHhcC-CEEEEeecCHHHhhcccccccccccccccccccccccccccccccccc------
Confidence 3457899999 333 26788998 677776542 35789999999863 333 4888
Q ss_pred hhhhHHhhhhhhhhcCCCccchhhhhhcccccceeeeeeccCChHHHHHHHHHHHHHhccCC------------------
Q 036440 84 SHIKIMIAFFIRLVVGRGRLHIFSWLNFMKRVINMQIIIHVFGDEESVKILKICREAITSKA------------------ 145 (181)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~iLHdw~D~~~~~iL~~~~~a~~~~g------------------ 145 (181)
+...++|..++++..++|++++..++|+|
T Consensus 132 ---------------------------------~~~~~l~h~~~~~~~~~l~~i~~~Lk~~G~~~i~~~~~~~~~~~~~~ 178 (222)
T d2ex4a1 132 ---------------------------------WIQWVIGHLTDQHLAEFLRRCKGSLRPNGIIVIKDNMAQEGVILDDV 178 (222)
T ss_dssp ---------------------------------EEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEEEBSSSEEEETT
T ss_pred ---------------------------------ccccccccchhhhhhhHHHHHHHhcCCcceEEEEEcccccccccccC
Confidence 88999999999999999999999999998
Q ss_pred ---ccCCHHHHHHHHHhCCCeEEEEEEcCCC
Q 036440 146 ---KLSTEKELESLFVEVHFHHYKITPLFGL 173 (181)
Q Consensus 146 ---~eRt~~E~~~Ll~~aGf~~~~i~~~~~~ 173 (181)
..||.++|+++|+++||++++.....+.
T Consensus 179 ~~~~~~~~~~~~~l~~~aGf~ii~~~~q~~f 209 (222)
T d2ex4a1 179 DSSVCRDLDVVRRIICSAGLSLLAEERQENL 209 (222)
T ss_dssp TTEEEEBHHHHHHHHHHTTCCEEEEEECCSC
T ss_pred CceeeCCHHHHHHHHHHcCCEEEEEEEeCCC
Confidence 5579999999999999999988765554
|
| >d1xtpa_ c.66.1.42 (A:) Hypothetical protein Lmaj004091aaa (LmjF30.0810) {Leishmania major [TaxId: 5664]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: AD-003 protein-like domain: Hypothetical protein Lmaj004091aaa (LmjF30.0810) species: Leishmania major [TaxId: 5664]
Probab=98.88 E-value=5.4e-09 Score=84.99 Aligned_cols=108 Identities=18% Similarity=0.225 Sum_probs=86.5
Q ss_pred cCCCeEEEec------------CCCCceEEEeec-hhhhhhhcc----CCCceEEecCCCCC-CCC--cceEeccccchh
Q 036440 26 ERLGSLVDVG------------AFPCVKCTEFDQ-PHVVANLLD----TNNLKYLADDFFQS-IPP--VCMIPLRLGYSH 85 (181)
Q Consensus 26 ~~~~~lvDvG------------~~P~l~~~~~Dl-P~Vv~~a~~----~~ri~~~~gDff~~-~P~--~d~~~~~~~~~~ 85 (181)
....++||+| .+++ +.+.+|. |..++.++. .+++++..+|+-+- .+. .|++
T Consensus 92 ~~~~~vLD~GcG~G~~t~~ll~~~~~-~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~d~~~~~~~~~~fD~I-------- 162 (254)
T d1xtpa_ 92 HGTSRALDCGAGIGRITKNLLTKLYA-TTDLLEPVKHMLEEAKRELAGMPVGKFILASMETATLPPNTYDLI-------- 162 (254)
T ss_dssp CCCSEEEEETCTTTHHHHHTHHHHCS-EEEEEESCHHHHHHHHHHTTTSSEEEEEESCGGGCCCCSSCEEEE--------
T ss_pred CCCCeEEEecccCChhhHHHHhhcCc-eEEEEcCCHHHHHhhhccccccccceeEEccccccccCCCccceE--------
Confidence 4567999999 3433 5677887 566666642 45689999998653 332 5888
Q ss_pred hhHHhhhhhhhhcCCCccchhhhhhcccccceeeeeeccCChHHHHHHHHHHHHHhccCC--------------------
Q 036440 86 IKIMIAFFIRLVVGRGRLHIFSWLNFMKRVINMQIIIHVFGDEESVKILKICREAITSKA-------------------- 145 (181)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~iLHdw~D~~~~~iL~~~~~a~~~~g-------------------- 145 (181)
++..++|.++|++..++|++|+++++|+|
T Consensus 163 -------------------------------~~~~vl~hl~d~d~~~~l~~~~~~LkpgG~iii~e~~~~~~~~~~d~~d 211 (254)
T d1xtpa_ 163 -------------------------------VIQWTAIYLTDADFVKFFKHCQQALTPNGYIFFKENCSTGDRFLVDKED 211 (254)
T ss_dssp -------------------------------EEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEEBC--CCEEEETTT
T ss_pred -------------------------------EeeccccccchhhhHHHHHHHHHhcCCCcEEEEEecCCCCCcceecccC
Confidence 89999999999999999999999999999
Q ss_pred --ccCCHHHHHHHHHhCCCeEEEEEEcCCC
Q 036440 146 --KLSTEKELESLFVEVHFHHYKITPLFGL 173 (181)
Q Consensus 146 --~eRt~~E~~~Ll~~aGf~~~~i~~~~~~ 173 (181)
..||.++|+++|++|||++++...-.+.
T Consensus 212 ~~~~rs~~~~~~l~~~aGf~ii~~~~q~~f 241 (254)
T d1xtpa_ 212 SSLTRSDIHYKRLFNESGVRVVKEAFQEEW 241 (254)
T ss_dssp TEEEBCHHHHHHHHHHHTCCEEEEEECTTC
T ss_pred CceeCCHHHHHHHHHHcCCEEEEEEeeCCC
Confidence 5689999999999999999887765443
|
| >d2o57a1 c.66.1.18 (A:16-297) Putative sarcosine dimethylglycine methyltransferase {Red algae (Galdieria sulphuraria) [TaxId: 130081]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Mycolic acid cyclopropane synthase domain: Putative sarcosine dimethylglycine methyltransferase species: Red algae (Galdieria sulphuraria) [TaxId: 130081]
Probab=98.71 E-value=2.6e-08 Score=80.65 Aligned_cols=106 Identities=14% Similarity=0.112 Sum_probs=84.2
Q ss_pred hhcCCCeEEEec-----------CCCCceEEEeec-hhhhhhhc-------cCCCceEEecCCCC-CCCC--cceEeccc
Q 036440 24 IFERLGSLVDVG-----------AFPCVKCTEFDQ-PHVVANLL-------DTNNLKYLADDFFQ-SIPP--VCMIPLRL 81 (181)
Q Consensus 24 d~~~~~~lvDvG-----------~~P~l~~~~~Dl-P~Vv~~a~-------~~~ri~~~~gDff~-~~P~--~d~~~~~~ 81 (181)
+++.-.+||||| +.++.+++.+|+ |..++.+. .+++++++.+|+.+ ++|. .|++
T Consensus 64 ~l~~~~~vLDiGcG~G~~~~~la~~~~~~v~gvD~s~~~i~~a~~~~~~~gl~~~v~~~~~d~~~l~~~~~sfD~V---- 139 (282)
T d2o57a1 64 VLQRQAKGLDLGAGYGGAARFLVRKFGVSIDCLNIAPVQNKRNEEYNNQAGLADNITVKYGSFLEIPCEDNSYDFI---- 139 (282)
T ss_dssp CCCTTCEEEEETCTTSHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHHHTCTTTEEEEECCTTSCSSCTTCEEEE----
T ss_pred CCCCCCEEEEeCCCCcHHHhhhhccCCcEEEEEeccchhhhhhhcccccccccccccccccccccccccccccchh----
Confidence 567778999999 334678899997 55665443 36899999999986 3454 4888
Q ss_pred cchhhhHHhhhhhhhhcCCCccchhhhhhcccccceeeeeeccCChHHHHHHHHHHHHHhccCC----------------
Q 036440 82 GYSHIKIMIAFFIRLVVGRGRLHIFSWLNFMKRVINMQIIIHVFGDEESVKILKICREAITSKA---------------- 145 (181)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~iLHdw~D~~~~~iL~~~~~a~~~~g---------------- 145 (181)
+...++|.++|-. ++|++++..++|||
T Consensus 140 -----------------------------------~~~~~l~h~~d~~--~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~ 182 (282)
T d2o57a1 140 -----------------------------------WSQDAFLHSPDKL--KVFQECARVLKPRGVMAITDPMKEDGIDKS 182 (282)
T ss_dssp -----------------------------------EEESCGGGCSCHH--HHHHHHHHHEEEEEEEEEEEEEECTTCCGG
T ss_pred -----------------------------------hccchhhhccCHH--HHHHHHHHhcCCCcEEEEEEeecCCCCchh
Confidence 7788888887654 68999999999999
Q ss_pred ------------ccCCHHHHHHHHHhCCCeEEEEEEc
Q 036440 146 ------------KLSTEKELESLFVEVHFHHYKITPL 170 (181)
Q Consensus 146 ------------~eRt~~E~~~Ll~~aGf~~~~i~~~ 170 (181)
...|.++|.++++++||..+.+...
T Consensus 183 ~~~~~~~~~~~~~~~s~~~~~~~l~~~Gf~~i~~~d~ 219 (282)
T d2o57a1 183 SIQPILDRIKLHDMGSLGLYRSLAKECGLVTLRTFSR 219 (282)
T ss_dssp GGHHHHHHHTCSSCCCHHHHHHHHHHTTEEEEEEEEC
T ss_pred HHHHHHHHhccCCCCCHHHHHHHHHHcCCceEEEEEC
Confidence 3458899999999999998887653
|
| >d1vl5a_ c.66.1.41 (A:) Hypothetical protein BH2331 {Bacillus halodurans [TaxId: 86665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Hypothetical protein BH2331 species: Bacillus halodurans [TaxId: 86665]
Probab=98.65 E-value=1.2e-07 Score=73.16 Aligned_cols=110 Identities=12% Similarity=0.196 Sum_probs=82.5
Q ss_pred HHHHHHhhhhhcCCCeEEEec------------CCCCceEEEeec-hhhhhhhc------cCCCceEEecCCCC-CCCC-
Q 036440 15 SLALKYCKQIFERLGSLVDVG------------AFPCVKCTEFDQ-PHVVANLL------DTNNLKYLADDFFQ-SIPP- 73 (181)
Q Consensus 15 ~~~l~~~~~d~~~~~~lvDvG------------~~P~l~~~~~Dl-P~Vv~~a~------~~~ri~~~~gDff~-~~P~- 73 (181)
..+++.. .+..-.+||||| .. .+.+.+|+ |..++.++ ..++++++.+|+.+ ++|.
T Consensus 5 ~~ll~~~--~l~~~~rVLDiGcG~G~~~~~l~~~~--~~v~gvD~s~~~i~~A~~~~~~~~~~~i~~~~~d~~~l~~~~~ 80 (231)
T d1vl5a_ 5 AKLMQIA--ALKGNEEVLDVATGGGHVANAFAPFV--KKVVAFDLTEDILKVARAFIEGNGHQQVEYVQGDAEQMPFTDE 80 (231)
T ss_dssp HHHHHHH--TCCSCCEEEEETCTTCHHHHHHGGGS--SEEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCC-CCCSCTT
T ss_pred HHHHHhc--CCCCcCEEEEecccCcHHHHHHHHhC--CEEEEEECCHHHHhhhhhccccccccccccccccccccccccc
Confidence 3566666 677778999999 33 36788898 55666553 25789999999886 3443
Q ss_pred -cceEeccccchhhhHHhhhhhhhhcCCCccchhhhhhcccccceeeeeeccCChHHHHHHHHHHHHHhccCC-------
Q 036440 74 -VCMIPLRLGYSHIKIMIAFFIRLVVGRGRLHIFSWLNFMKRVINMQIIIHVFGDEESVKILKICREAITSKA------- 145 (181)
Q Consensus 74 -~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~iLHdw~D~~~~~iL~~~~~a~~~~g------- 145 (181)
.|++ +...++|..+|-+ ++|++++..|+|||
T Consensus 81 ~fD~v---------------------------------------~~~~~l~~~~d~~--~~l~~~~r~LkpgG~l~i~~~ 119 (231)
T d1vl5a_ 81 RFHIV---------------------------------------TCRIAAHHFPNPA--SFVSEAYRVLKKGGQLLLVDN 119 (231)
T ss_dssp CEEEE---------------------------------------EEESCGGGCSCHH--HHHHHHHHHEEEEEEEEEEEE
T ss_pred ccccc---------------------------------------cccccccccCCHH--HHHHHHHHhcCCCcEEEEEeC
Confidence 5888 7778888887644 57888888888888
Q ss_pred ------------------------ccCCHHHHHHHHHhCCCeEEEEEE
Q 036440 146 ------------------------KLSTEKELESLFVEVHFHHYKITP 169 (181)
Q Consensus 146 ------------------------~eRt~~E~~~Ll~~aGf~~~~i~~ 169 (181)
+..+.++|..+|+++||+++++..
T Consensus 120 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~~~~~~ 167 (231)
T d1vl5a_ 120 SAPENDAFDVFYNYVEKERDYSHHRAWKKSDWLKMLEEAGFELEELHC 167 (231)
T ss_dssp EBCSSHHHHHHHHHHHHHHCTTCCCCCBHHHHHHHHHHHTCEEEEEEE
T ss_pred CCCCCHHHHHHHHHHHhhcccCcccCCCHHHHHHHHHHCCCEEEEEEE
Confidence 566789999999999999887653
|
| >d1nkva_ c.66.1.21 (A:) Hypothetical Protein YjhP {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Hypothetical Protein YjhP domain: Hypothetical Protein YjhP species: Escherichia coli [TaxId: 562]
Probab=98.46 E-value=3.3e-07 Score=72.36 Aligned_cols=111 Identities=9% Similarity=0.060 Sum_probs=86.8
Q ss_pred HHHHHhhhhhcCCCeEEEec-----------CCCCceEEEeec-hhhhhhhc-------cCCCceEEecCCCCCCCC--c
Q 036440 16 LALKYCKQIFERLGSLVDVG-----------AFPCVKCTEFDQ-PHVVANLL-------DTNNLKYLADDFFQSIPP--V 74 (181)
Q Consensus 16 ~~l~~~~~d~~~~~~lvDvG-----------~~P~l~~~~~Dl-P~Vv~~a~-------~~~ri~~~~gDff~~~P~--~ 74 (181)
.+++.. .+..-.+||||| +.+..+++.+|+ |..++.++ .++||+++.+|+.+..|. .
T Consensus 24 ~l~~~~--~l~pg~~VLDiGCG~G~~~~~la~~~~~~v~GvD~s~~~~~~ar~~~~~~gl~~~v~~~~~d~~~~~~~~~f 101 (245)
T d1nkva_ 24 TLGRVL--RMKPGTRILDLGSGSGEMLCTWARDHGITGTGIDMSSLFTAQAKRRAEELGVSERVHFIHNDAAGYVANEKC 101 (245)
T ss_dssp HHHHHT--CCCTTCEEEEETCTTCHHHHHHHHHTCCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCCTTCCCSSCE
T ss_pred HHHHHc--CCCCCCEEEEEcCCCCHHHHHHHHhcCCEEEEEecccchhhHHHHHHHHhhccccchhhhhHHhhccccCce
Confidence 355666 577778999999 333478999999 55555442 478999999999876554 5
Q ss_pred ceEeccccchhhhHHhhhhhhhhcCCCccchhhhhhcccccceeeeeeccCChHHHHHHHHHHHHHhccCC---------
Q 036440 75 CMIPLRLGYSHIKIMIAFFIRLVVGRGRLHIFSWLNFMKRVINMQIIIHVFGDEESVKILKICREAITSKA--------- 145 (181)
Q Consensus 75 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~iLHdw~D~~~~~iL~~~~~a~~~~g--------- 145 (181)
|.+ +...++|.+.|- .++|++++..++|||
T Consensus 102 D~v---------------------------------------~~~~~~~~~~d~--~~~l~~~~r~LkPGG~l~i~~~~~ 140 (245)
T d1nkva_ 102 DVA---------------------------------------ACVGATWIAGGF--AGAEELLAQSLKPGGIMLIGEPYW 140 (245)
T ss_dssp EEE---------------------------------------EEESCGGGTSSS--HHHHHHHTTSEEEEEEEEEEEEEE
T ss_pred eEE---------------------------------------EEEehhhccCCH--HHHHHHHHHHcCcCcEEEEEeccc
Confidence 888 778888888765 458999999999999
Q ss_pred -------------------ccCCHHHHHHHHHhCCCeEEEEEE
Q 036440 146 -------------------KLSTEKELESLFVEVHFHHYKITP 169 (181)
Q Consensus 146 -------------------~eRt~~E~~~Ll~~aGf~~~~i~~ 169 (181)
...|..++..+++++||..+....
T Consensus 141 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aG~~~v~~~~ 183 (245)
T d1nkva_ 141 RQLPATEEIAQACGVSSTSDFLTLPGLVGAFDDLGYDVVEMVL 183 (245)
T ss_dssp TTCCSSHHHHHTTTCSCGGGSCCHHHHHHHHHTTTBCCCEEEE
T ss_pred cCCCChHHHHHHhccCCCcccCCHHHHHHHHHHcCCEEEEEEe
Confidence 467999999999999999887653
|
| >d1vlma_ c.66.1.41 (A:) Possible histamine N-methyltransferase TM1293 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Possible histamine N-methyltransferase TM1293 species: Thermotoga maritima [TaxId: 2336]
Probab=98.44 E-value=1.9e-07 Score=71.38 Aligned_cols=101 Identities=16% Similarity=0.181 Sum_probs=78.2
Q ss_pred CCCeEEEec------CCCCceEEEeec-hhhhhhhccCCCceEEecCCCC-CCCC--cceEeccccchhhhHHhhhhhhh
Q 036440 27 RLGSLVDVG------AFPCVKCTEFDQ-PHVVANLLDTNNLKYLADDFFQ-SIPP--VCMIPLRLGYSHIKIMIAFFIRL 96 (181)
Q Consensus 27 ~~~~lvDvG------~~P~l~~~~~Dl-P~Vv~~a~~~~ri~~~~gDff~-~~P~--~d~~~~~~~~~~~~~~~~~~~~~ 96 (181)
.-.+||||| ..+-.+.+.+|+ |..++.++. .+++++.+|+.+ +.|. .|++
T Consensus 36 ~~~~vLDiGcG~G~~~~~~~~~~giD~s~~~~~~a~~-~~~~~~~~d~~~l~~~~~~fD~I------------------- 95 (208)
T d1vlma_ 36 PEGRGVEIGVGTGRFAVPLKIKIGVEPSERMAEIARK-RGVFVLKGTAENLPLKDESFDFA------------------- 95 (208)
T ss_dssp CSSCEEEETCTTSTTHHHHTCCEEEESCHHHHHHHHH-TTCEEEECBTTBCCSCTTCEEEE-------------------
T ss_pred CCCeEEEECCCCcccccccceEEEEeCChhhcccccc-ccccccccccccccccccccccc-------------------
Confidence 345899999 111124577898 666666653 479999999875 2443 4888
Q ss_pred hcCCCccchhhhhhcccccceeeeeeccCChHHHHHHHHHHHHHhccCC------------------------------c
Q 036440 97 VVGRGRLHIFSWLNFMKRVINMQIIIHVFGDEESVKILKICREAITSKA------------------------------K 146 (181)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~~l~~iLHdw~D~~~~~iL~~~~~a~~~~g------------------------------~ 146 (181)
+...+||..+| -.++|++++..++||| +
T Consensus 96 --------------------~~~~~l~h~~d--~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 153 (208)
T d1vlma_ 96 --------------------LMVTTICFVDD--PERALKEAYRILKKGGYLIVGIVDRESFLGREYEKNKEKSVFYKNAR 153 (208)
T ss_dssp --------------------EEESCGGGSSC--HHHHHHHHHHHEEEEEEEEEEEECSSSHHHHHHHHTTTC-CCSTTCC
T ss_pred --------------------ccccccccccc--cccchhhhhhcCCCCceEEEEecCCcchhHHhhhhcccccccccccc
Confidence 88899999976 4478999999999999 5
Q ss_pred cCCHHHHHHHHHhCCCeEEEEEE
Q 036440 147 LSTEKELESLFVEVHFHHYKITP 169 (181)
Q Consensus 147 eRt~~E~~~Ll~~aGf~~~~i~~ 169 (181)
..|.+|+..+|+++||+++++..
T Consensus 154 ~~s~~~l~~~l~~~Gf~~i~v~~ 176 (208)
T d1vlma_ 154 FFSTEELMDLMRKAGFEEFKVVQ 176 (208)
T ss_dssp CCCHHHHHHHHHHTTCEEEEEEE
T ss_pred CCCHHHHHHHHHHcCCeEEEEEE
Confidence 57899999999999999998875
|
| >d1xxla_ c.66.1.41 (A:) Hypothetical protein YcgJ {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Hypothetical protein YcgJ species: Bacillus subtilis [TaxId: 1423]
Probab=98.35 E-value=2.3e-06 Score=66.81 Aligned_cols=111 Identities=16% Similarity=0.248 Sum_probs=80.4
Q ss_pred HHHHHHhhhhhcCCCeEEEec----------CCCCceEEEeech-hhhhhhcc------CCCceEEecCCCC-CCCC--c
Q 036440 15 SLALKYCKQIFERLGSLVDVG----------AFPCVKCTEFDQP-HVVANLLD------TNNLKYLADDFFQ-SIPP--V 74 (181)
Q Consensus 15 ~~~l~~~~~d~~~~~~lvDvG----------~~P~l~~~~~DlP-~Vv~~a~~------~~ri~~~~gDff~-~~P~--~ 74 (181)
..+++.. +++.-.+||||| +--.-+++.+|+- ..++.|.. .+++.++.+|..+ ++|. .
T Consensus 6 ~~l~~~~--~~~~~~rILDiGcGtG~~~~~la~~~~~v~gvD~S~~~l~~A~~~~~~~~~~~~~~~~~d~~~~~~~~~~f 83 (234)
T d1xxla_ 6 GLMIKTA--ECRAEHRVLDIGAGAGHTALAFSPYVQECIGVDATKEMVEVASSFAQEKGVENVRFQQGTAESLPFPDDSF 83 (234)
T ss_dssp HHHHHHH--TCCTTCEEEEESCTTSHHHHHHGGGSSEEEEEESCHHHHHHHHHHHHHHTCCSEEEEECBTTBCCSCTTCE
T ss_pred HHHHHHh--CCCCCCEEEEeCCcCcHHHHHHHHhCCeEEEEeCChhhhhhhhhhhccccccccccccccccccccccccc
Confidence 4466777 788889999999 1112478999984 55555532 4689999999876 2343 4
Q ss_pred ceEeccccchhhhHHhhhhhhhhcCCCccchhhhhhcccccceeeeeeccCChHHHHHHHHHHHHHhccCC---------
Q 036440 75 CMIPLRLGYSHIKIMIAFFIRLVVGRGRLHIFSWLNFMKRVINMQIIIHVFGDEESVKILKICREAITSKA--------- 145 (181)
Q Consensus 75 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~iLHdw~D~~~~~iL~~~~~a~~~~g--------- 145 (181)
|++ +...++|..+| -.++|++++..++|||
T Consensus 84 D~v---------------------------------------~~~~~l~~~~d--~~~~l~~~~r~LkpgG~~~~~~~~~ 122 (234)
T d1xxla_ 84 DII---------------------------------------TCRYAAHHFSD--VRKAVREVARVLKQDGRFLLVDHYA 122 (234)
T ss_dssp EEE---------------------------------------EEESCGGGCSC--HHHHHHHHHHHEEEEEEEEEEEECB
T ss_pred cee---------------------------------------eeeceeecccC--HHHHHHHHHHeeCCCcEEEEEEcCC
Confidence 888 66666766655 3456777777777777
Q ss_pred ----------------------ccCCHHHHHHHHHhCCCeEEEEE
Q 036440 146 ----------------------KLSTEKELESLFVEVHFHHYKIT 168 (181)
Q Consensus 146 ----------------------~eRt~~E~~~Ll~~aGf~~~~i~ 168 (181)
+..+.++|..+++++||....+.
T Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gf~~~~~~ 167 (234)
T d1xxla_ 123 PEDPVLDEFVNHLNRLRDPSHVRESSLSEWQAMFSANQLAYQDIQ 167 (234)
T ss_dssp CSSHHHHHHHHHHHHHHCTTCCCCCBHHHHHHHHHHTTEEEEEEE
T ss_pred CCCHHHHHHHHHHHhhCCCcccccCCHHHHHHHHHHCCCceeEEE
Confidence 67789999999999999876654
|
| >d1wzna1 c.66.1.43 (A:1-251) Hypothetical methyltransferase PH1305 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: CAC2371-like domain: Hypothetical methyltransferase PH1305 species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=98.24 E-value=4.7e-06 Score=64.71 Aligned_cols=84 Identities=13% Similarity=0.184 Sum_probs=59.4
Q ss_pred hhcCCCeEEEec----------CCCCceEEEeec-hhhhhhhcc-----CCCceEEecCCCC-CCCC-cceEeccccchh
Q 036440 24 IFERLGSLVDVG----------AFPCVKCTEFDQ-PHVVANLLD-----TNNLKYLADDFFQ-SIPP-VCMIPLRLGYSH 85 (181)
Q Consensus 24 d~~~~~~lvDvG----------~~P~l~~~~~Dl-P~Vv~~a~~-----~~ri~~~~gDff~-~~P~-~d~~~~~~~~~~ 85 (181)
..+..++||||| +-.+.+.+.+|+ |..++.+.. ..++++..+|+-+ ++|. .|++
T Consensus 38 ~~~~~~~iLDiGcGtG~~~~~l~~~~~~v~gvD~s~~mi~~a~~~~~~~~~~i~~~~~d~~~l~~~~~fD~I-------- 109 (251)
T d1wzna1 38 AKREVRRVLDLACGTGIPTLELAERGYEVVGLDLHEEMLRVARRKAKERNLKIEFLQGDVLEIAFKNEFDAV-------- 109 (251)
T ss_dssp CSSCCCEEEEETCTTCHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCCCEEEESCGGGCCCCSCEEEE--------
T ss_pred cCCCCCEEEEeCCCCCccchhhcccceEEEEEeeccccccccccccccccccchheehhhhhcccccccchH--------
Confidence 345567899999 222347888898 456665542 4589999999865 3343 4766
Q ss_pred hhHHhhhhhhhhcCCCccchhhhhhcccccceeeeeeccCChHHHHHHHHHHHHHhccCC
Q 036440 86 IKIMIAFFIRLVVGRGRLHIFSWLNFMKRVINMQIIIHVFGDEESVKILKICREAITSKA 145 (181)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~iLHdw~D~~~~~iL~~~~~a~~~~g 145 (181)
+.+..++|-++.++..+.|+++++.++|||
T Consensus 110 ------------------------------~~~~~~~~~~~~~~~~~~L~~~~~~LkpgG 139 (251)
T d1wzna1 110 ------------------------------TMFFSTIMYFDEEDLRKLFSKVAEALKPGG 139 (251)
T ss_dssp ------------------------------EECSSGGGGSCHHHHHHHHHHHHHHEEEEE
T ss_pred ------------------------------hhhhhhhhcCChHHHHHHHHHHHHHcCCCc
Confidence 123456666777888899999999999998
|
| >d2p7ia1 c.66.1.41 (A:22-246) Hypothetical protein ECA1738 {Erwinia carotovora [TaxId: 554]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Hypothetical protein ECA1738 species: Erwinia carotovora [TaxId: 554]
Probab=98.24 E-value=6.7e-06 Score=64.09 Aligned_cols=111 Identities=14% Similarity=0.160 Sum_probs=80.3
Q ss_pred HHHHHhhhhhcCCCeEEEec----------CCCCceEEEeec-hhhhhhhc--cCCCceEEecCCCCCC-CC-cceEecc
Q 036440 16 LALKYCKQIFERLGSLVDVG----------AFPCVKCTEFDQ-PHVVANLL--DTNNLKYLADDFFQSI-PP-VCMIPLR 80 (181)
Q Consensus 16 ~~l~~~~~d~~~~~~lvDvG----------~~P~l~~~~~Dl-P~Vv~~a~--~~~ri~~~~gDff~~~-P~-~d~~~~~ 80 (181)
-.++.+. .+.+-++||||| +--+.+++.+|+ |..++.++ ..++++++.+|+-+.. |. .|++
T Consensus 10 ~~~~~~~-~~~~~~~VLDiGcG~G~~~~~l~~~g~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~~~~~~~~~fD~I--- 85 (225)
T d2p7ia1 10 FMVRAFT-PFFRPGNLLELGSFKGDFTSRLQEHFNDITCVEASEEAISHAQGRLKDGITYIHSRFEDAQLPRRYDNI--- 85 (225)
T ss_dssp HHHHHHG-GGCCSSCEEEESCTTSHHHHHHTTTCSCEEEEESCHHHHHHHHHHSCSCEEEEESCGGGCCCSSCEEEE---
T ss_pred HHHHHhh-hhCCCCcEEEEeCCCcHHHHHHHHcCCeEEEEeCcHHHhhhhhcccccccccccccccccccccccccc---
Confidence 3455664 455678999999 222346889998 66776665 3568999999986543 33 5888
Q ss_pred ccchhhhHHhhhhhhhhcCCCccchhhhhhcccccceeeeeeccCChHHHHHHHHHHH-HHhccCC--------------
Q 036440 81 LGYSHIKIMIAFFIRLVVGRGRLHIFSWLNFMKRVINMQIIIHVFGDEESVKILKICR-EAITSKA-------------- 145 (181)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~iLHdw~D~~~~~iL~~~~-~a~~~~g-------------- 145 (181)
++..+||..+|. .++|++++ ..++|||
T Consensus 86 ------------------------------------~~~~vleh~~d~--~~~l~~i~~~~Lk~gG~l~i~~pn~~~~~~ 127 (225)
T d2p7ia1 86 ------------------------------------VLTHVLEHIDDP--VALLKRINDDWLAEGGRLFLVCPNANAVSR 127 (225)
T ss_dssp ------------------------------------EEESCGGGCSSH--HHHHHHHHHTTEEEEEEEEEEEECTTCHHH
T ss_pred ------------------------------------cccceeEecCCH--HHHHHHHHHHhcCCCceEEEEeCCcccHHH
Confidence 777888877665 35677776 4577777
Q ss_pred -------------------------ccCCHHHHHHHHHhCCCeEEEEE
Q 036440 146 -------------------------KLSTEKELESLFVEVHFHHYKIT 168 (181)
Q Consensus 146 -------------------------~eRt~~E~~~Ll~~aGf~~~~i~ 168 (181)
+..|.++++.+++++||++++..
T Consensus 128 ~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~l~~~l~~~Gf~i~~~~ 175 (225)
T d2p7ia1 128 QIAVKMGIISHNSAVTEAEFAHGHRCTYALDTLERDASRAGLQVTYRS 175 (225)
T ss_dssp HHHHHTTSSSSTTCCCHHHHHTTCCCCCCHHHHHHHHHHTTCEEEEEE
T ss_pred HHHHHhhhhhhhhhcCccccceeeeeccCHHHHHHHHHHCCCEEEEEE
Confidence 45689999999999999988754
|
| >d1y8ca_ c.66.1.43 (A:) Putative methyltransferase CAC2371 {Clostridium acetobutylicum [TaxId: 1488]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: CAC2371-like domain: Putative methyltransferase CAC2371 species: Clostridium acetobutylicum [TaxId: 1488]
Probab=98.06 E-value=2.3e-05 Score=61.14 Aligned_cols=107 Identities=8% Similarity=0.092 Sum_probs=76.9
Q ss_pred CCeEEEec----------CCCCceEEEeec-hhhhhhhc-----cCCCceEEecCCCCC-CCC-cceEeccccchhhhHH
Q 036440 28 LGSLVDVG----------AFPCVKCTEFDQ-PHVVANLL-----DTNNLKYLADDFFQS-IPP-VCMIPLRLGYSHIKIM 89 (181)
Q Consensus 28 ~~~lvDvG----------~~P~l~~~~~Dl-P~Vv~~a~-----~~~ri~~~~gDff~~-~P~-~d~~~~~~~~~~~~~~ 89 (181)
.++|||+| +--+.+.+.+|+ |..++.|. ...+++++.+|+.+- ++. -|++
T Consensus 38 ~~~vLDiGCG~G~~~~~l~~~g~~v~GvD~S~~ml~~A~~~~~~~~~~v~~~~~d~~~~~~~~~fD~i------------ 105 (246)
T d1y8ca_ 38 FDDYLDLACGTGNLTENLCPKFKNTWAVDLSQEMLSEAENKFRSQGLKPRLACQDISNLNINRKFDLI------------ 105 (246)
T ss_dssp TTEEEEETCTTSTTHHHHGGGSSEEEEECSCHHHHHHHHHHHHHTTCCCEEECCCGGGCCCSCCEEEE------------
T ss_pred CCeEEEEeCcCCHHHHHHHHhCCccEeeccchhhhhhccccccccCccceeeccchhhhccccccccc------------
Confidence 46899999 333457889998 45566553 245899999999763 333 4766
Q ss_pred hhhhhhhhcCCCccchhhhhhcccccceeeeeecc-CChHHHHHHHHHHHHHhccCC-----------------------
Q 036440 90 IAFFIRLVVGRGRLHIFSWLNFMKRVINMQIIIHV-FGDEESVKILKICREAITSKA----------------------- 145 (181)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~iLHd-w~D~~~~~iL~~~~~a~~~~g----------------------- 145 (181)
+.+-.++|. -+.++..++|++++..++|||
T Consensus 106 --------------------------~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~~i~~~~~~~~~~~~~~~~~~~~ 159 (246)
T d1y8ca_ 106 --------------------------TCCLDSTNYIIDSDDLKKYFKAVSNHLKEGGVFIFDINSYYKLSQVLGNNDFNY 159 (246)
T ss_dssp --------------------------EECTTGGGGCCSHHHHHHHHHHHHTTEEEEEEEEEEEECHHHHHTTTTTCCEEE
T ss_pred --------------------------ceeeeeeeccCCHHHHHHHHHHHHHhCCCCeEEEEEeCCHHHHhhhcccCceee
Confidence 022244444 356777789999999999988
Q ss_pred -----------------------------------------ccCCHHHHHHHHHhCCCeEEEEEEcCC
Q 036440 146 -----------------------------------------KLSTEKELESLFVEVHFHHYKITPLFG 172 (181)
Q Consensus 146 -----------------------------------------~eRt~~E~~~Ll~~aGf~~~~i~~~~~ 172 (181)
+..|.+|++.+|+++||+.+++....+
T Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~l~~~l~~~Gf~~i~~~~~~~ 227 (246)
T d1y8ca_ 160 DDDEVFYYWENQFEDDLVSMYISFFVRDGEFYKRFDEEHEERAYKEEDIEKYLKHGQLNILDKVDCYS 227 (246)
T ss_dssp EETTEEEEEEEEEETTEEEEEEEEEEECSSSEEEEEEEEEEECCCHHHHHHHHHHTTEEEEEEEESSS
T ss_pred cCCcEEEEEeeccCCcceeEEEEEEEecCCceEEEEEEEEEEcCCHHHHHHHHHHCCCEEEEEEecCC
Confidence 234899999999999999998876543
|
| >d2gh1a1 c.66.1.49 (A:13-293) Methyltransferase BC2162 {Bacillus cereus [TaxId: 1396]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: BC2162-like domain: Methyltransferase BC2162 species: Bacillus cereus [TaxId: 1396]
Probab=97.97 E-value=1.5e-05 Score=64.64 Aligned_cols=81 Identities=15% Similarity=0.200 Sum_probs=61.5
Q ss_pred hhcCCCeEEEec------------CCC-CceEEEeec-hhhhhhhcc-----CCCceEEecCCCCC-CCC-cceEecccc
Q 036440 24 IFERLGSLVDVG------------AFP-CVKCTEFDQ-PHVVANLLD-----TNNLKYLADDFFQS-IPP-VCMIPLRLG 82 (181)
Q Consensus 24 d~~~~~~lvDvG------------~~P-~l~~~~~Dl-P~Vv~~a~~-----~~ri~~~~gDff~~-~P~-~d~~~~~~~ 82 (181)
.+++..+|||+| .+| +.+.+.+|+ |..++.++. ..+++++.+|+.+. +|. .|++
T Consensus 24 ~~~~~~~ILDiGcG~G~~~~~la~~~~~~~~v~giD~s~~~l~~a~~~~~~~~~~~~f~~~d~~~~~~~~~fD~v----- 98 (281)
T d2gh1a1 24 KITKPVHIVDYGCGYGYLGLVLMPLLPEGSKYTGIDSGETLLAEARELFRLLPYDSEFLEGDATEIELNDKYDIA----- 98 (281)
T ss_dssp CCCSCCEEEEETCTTTHHHHHHTTTSCTTCEEEEEECCHHHHHHHHHHHHSSSSEEEEEESCTTTCCCSSCEEEE-----
T ss_pred ccCCcCEEEEecCcCCHHHHHHHHhCCCCCEEEEEecchhHhhhhhcccccccccccccccccccccccCCceEE-----
Confidence 356778999999 456 478899998 566665542 34789999998763 333 5888
Q ss_pred chhhhHHhhhhhhhhcCCCccchhhhhhcccccceeeeeeccCChHHHHHHHHHHHHHhccCC
Q 036440 83 YSHIKIMIAFFIRLVVGRGRLHIFSWLNFMKRVINMQIIIHVFGDEESVKILKICREAITSKA 145 (181)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~iLHdw~D~~~~~iL~~~~~a~~~~g 145 (181)
+...+||..+|.. ++|++++..++|||
T Consensus 99 ----------------------------------~~~~~l~~~~d~~--~~l~~~~~~LkpgG 125 (281)
T d2gh1a1 99 ----------------------------------ICHAFLLHMTTPE--TMLQKMIHSVKKGG 125 (281)
T ss_dssp ----------------------------------EEESCGGGCSSHH--HHHHHHHHTEEEEE
T ss_pred ----------------------------------EEehhhhcCCCHH--HHHHHHHHHcCcCc
Confidence 8888888887765 58999999999988
|
| >d2fk8a1 c.66.1.18 (A:22-301) Methoxy mycolic acid synthase 4, Mma4 {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Mycolic acid cyclopropane synthase domain: Methoxy mycolic acid synthase 4, Mma4 species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=97.78 E-value=5.9e-05 Score=61.88 Aligned_cols=31 Identities=13% Similarity=0.052 Sum_probs=24.2
Q ss_pred HhccCCccCCHHHHHHHHHhCCCeEEEEEEc
Q 036440 140 AITSKAKLSTEKELESLFVEVHFHHYKITPL 170 (181)
Q Consensus 140 a~~~~g~eRt~~E~~~Ll~~aGf~~~~i~~~ 170 (181)
-+-|+|...|.+|+...++++||+++.+...
T Consensus 186 yifPgg~lPS~~~l~~~~e~aGf~v~~~~~~ 216 (280)
T d2fk8a1 186 EIFPGGRLPSTEMMVEHGEKAGFTVPEPLSL 216 (280)
T ss_dssp HTSTTCCCCCHHHHHHHHHHTTCBCCCCEEC
T ss_pred hccCCCcccchHhhhhhHHhhccccceeeec
Confidence 3445556789999999999999998876543
|
| >d2i6ga1 c.66.1.44 (A:1-198) Putative methyltransferase TehB {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: TehB-like domain: Putative methyltransferase TehB species: Salmonella typhimurium [TaxId: 90371]
Probab=97.76 E-value=8.7e-05 Score=56.32 Aligned_cols=112 Identities=17% Similarity=0.124 Sum_probs=81.9
Q ss_pred HHHHHHhhhhhcCCCeEEEec----------CCCCceEEEeech-hhhhhhc------cCCCceEEecCCCCCCCC--cc
Q 036440 15 SLALKYCKQIFERLGSLVDVG----------AFPCVKCTEFDQP-HVVANLL------DTNNLKYLADDFFQSIPP--VC 75 (181)
Q Consensus 15 ~~~l~~~~~d~~~~~~lvDvG----------~~P~l~~~~~DlP-~Vv~~a~------~~~ri~~~~gDff~~~P~--~d 75 (181)
..+++.. .+-.-++||||| +--+.+.+.+|+- ..++.+. .-+++++..+|+.+..|. .|
T Consensus 20 ~~~~~~~--~~~~~grvLDiGcG~G~~~~~la~~g~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~fD 97 (198)
T d2i6ga1 20 SDVLAAA--KVVAPGRTLDLGCGNGRNSLYLAANGYDVTAWDKNPASMANLERIKAAEGLDNLQTDLVDLNTLTFDGEYD 97 (198)
T ss_dssp HHHHHHH--TTSCSCEEEEETCTTSHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCTTEEEEECCTTTCCCCCCEE
T ss_pred HHHHHHc--ccCCCCcEEEECCCCCHHHHHHHHHhhhhccccCcHHHHHHHHHHhhhccccchhhhheeccccccccccc
Confidence 3456655 455667999999 1114567889984 4565443 136799999999875443 58
Q ss_pred eEeccccchhhhHHhhhhhhhhcCCCccchhhhhhcccccceeeeeeccCChHHHHHHHHHHHHHhccCC----------
Q 036440 76 MIPLRLGYSHIKIMIAFFIRLVVGRGRLHIFSWLNFMKRVINMQIIIHVFGDEESVKILKICREAITSKA---------- 145 (181)
Q Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~iLHdw~D~~~~~iL~~~~~a~~~~g---------- 145 (181)
++ +...++|..++++..++|++++.+++|+|
T Consensus 98 ~I---------------------------------------~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~~~~~ 138 (198)
T d2i6ga1 98 FI---------------------------------------LSTVVMMFLEAQTIPGLIANMQRCTKPGGYNLIVAAMDT 138 (198)
T ss_dssp EE---------------------------------------EEESCGGGSCTTHHHHHHHHHHHTEEEEEEEEEEEEBC-
T ss_pred EE---------------------------------------EEeeeeecCCHHHHHHHHHHHHHHcCCCcEEEEEEecCC
Confidence 88 88999999999999999999999999999
Q ss_pred ----------ccCCHHHHHHHHHhCCCeEEEEEE
Q 036440 146 ----------KLSTEKELESLFVEVHFHHYKITP 169 (181)
Q Consensus 146 ----------~eRt~~E~~~Ll~~aGf~~~~i~~ 169 (181)
...+..|+.+++ +||+++....
T Consensus 139 ~~~~~~~~~~~~~~~~el~~~~--~~~~i~~~~e 170 (198)
T d2i6ga1 139 PDFPCTVGFPFAFKEGELRRYY--EGWDMLKYNE 170 (198)
T ss_dssp --------CCCCBCTTHHHHHT--TTSEEEEEEE
T ss_pred ccCCCCCCCCCccCHHHHHHHh--CCCeEEEeee
Confidence 334555677776 6888776543
|
| >d1dusa_ c.66.1.4 (A:) Hypothetical protein MJ0882 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Hypothetical protein MJ0882 domain: Hypothetical protein MJ0882 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=97.68 E-value=9.6e-05 Score=56.39 Aligned_cols=122 Identities=12% Similarity=0.211 Sum_probs=80.1
Q ss_pred HHHHHHhhhhhcCCCeEEEec------------CCCCceEEEeec-hhhhhhhcc--------CCCceEEecCCCCCCCC
Q 036440 15 SLALKYCKQIFERLGSLVDVG------------AFPCVKCTEFDQ-PHVVANLLD--------TNNLKYLADDFFQSIPP 73 (181)
Q Consensus 15 ~~~l~~~~~d~~~~~~lvDvG------------~~P~l~~~~~Dl-P~Vv~~a~~--------~~ri~~~~gDff~~~P~ 73 (181)
..+++.. .-..-.+|||+| ..| +.+.+|+ |..++.+.. ..++++..+|+++.++.
T Consensus 42 ~lLi~~l--~~~~~~~VLDiGcG~G~~~~~la~~~~--~v~~iD~s~~~i~~a~~n~~~~~l~~~~i~~~~~d~~~~~~~ 117 (194)
T d1dusa_ 42 KILVENV--VVDKDDDILDLGCGYGVIGIALADEVK--STTMADINRRAIKLAKENIKLNNLDNYDIRVVHSDLYENVKD 117 (194)
T ss_dssp HHHHHHC--CCCTTCEEEEETCTTSHHHHHHGGGSS--EEEEEESCHHHHHHHHHHHHHTTCTTSCEEEEECSTTTTCTT
T ss_pred HHHHHhC--CcCCCCeEEEEeecCChhHHHHHhhcc--ccceeeeccccchhHHHHHHHhCCccceEEEEEcchhhhhcc
Confidence 4566666 456678999999 455 4566676 666665531 45799999999987765
Q ss_pred --cceEeccccchhhhHHhhhhhhhhcCCCccchhhhhhcccccceeeeeeccCChHHHHHHHHHHHHHhccCCc-----
Q 036440 74 --VCMIPLRLGYSHIKIMIAFFIRLVVGRGRLHIFSWLNFMKRVINMQIIIHVFGDEESVKILKICREAITSKAK----- 146 (181)
Q Consensus 74 --~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~iLHdw~D~~~~~iL~~~~~a~~~~g~----- 146 (181)
.|.+ ++.-.+| ...+...++++.+...++|+|+
T Consensus 118 ~~fD~I---------------------------------------i~~~p~~-~~~~~~~~~l~~~~~~LkpgG~l~i~~ 157 (194)
T d1dusa_ 118 RKYNKI---------------------------------------ITNPPIR-AGKEVLHRIIEEGKELLKDNGEIWVVI 157 (194)
T ss_dssp SCEEEE---------------------------------------EECCCST-TCHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred CCceEE---------------------------------------EEcccEE-ecchhhhhHHHHHHHhcCcCcEEEEEE
Confidence 5887 5554555 4456667899999999999992
Q ss_pred --cCCHHHHHHHHHhCCCeEEEEEEcCCCCeEEEEEC
Q 036440 147 --LSTEKELESLFVEVHFHHYKITPLFGLPSLIEVYP 181 (181)
Q Consensus 147 --eRt~~E~~~Ll~~aGf~~~~i~~~~~~~~viE~~~ 181 (181)
....+.+..++++ .|..+++....+...||++++
T Consensus 158 ~~~~~~~~~~~~l~~-~f~~~~~~~~~~gf~vl~a~K 193 (194)
T d1dusa_ 158 QTKQGAKSLAKYMKD-VFGNVETVTIKGGYRVLKSKK 193 (194)
T ss_dssp ESTHHHHHHHHHHHH-HHSCCEEEEEETTEEEEEEEC
T ss_pred eCcCCHHHHHHHHHH-hCCcEEEEEecCCcEEEEEEE
Confidence 1222334444443 344455554445566788764
|
| >d1ri5a_ c.66.1.34 (A:) mRNA cap (Guanine N-7) methyltransferase {Fungus (Encephalitozoon cuniculi) [TaxId: 6035]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: mRNA cap (Guanine N-7) methyltransferase domain: mRNA cap (Guanine N-7) methyltransferase species: Fungus (Encephalitozoon cuniculi) [TaxId: 6035]
Probab=97.63 E-value=0.00023 Score=55.93 Aligned_cols=87 Identities=13% Similarity=0.085 Sum_probs=61.0
Q ss_pred HHHHhhhhhcCCCeEEEec-----------CCCCceEEEeec-hhhhhhhc-------cCCCceEEecCCCCC-CC-C--
Q 036440 17 ALKYCKQIFERLGSLVDVG-----------AFPCVKCTEFDQ-PHVVANLL-------DTNNLKYLADDFFQS-IP-P-- 73 (181)
Q Consensus 17 ~l~~~~~d~~~~~~lvDvG-----------~~P~l~~~~~Dl-P~Vv~~a~-------~~~ri~~~~gDff~~-~P-~-- 73 (181)
+++.| .+.-.+|||+| +...-+.+.+|+ |..++.|. ...++.+..+|.+.. ++ .
T Consensus 17 lI~~~---~~~~~~VLDlGCG~G~~~~~~~~~~~~~v~GiD~S~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~~~~~~~ 93 (252)
T d1ri5a_ 17 LIRLY---TKRGDSVLDLGCGKGGDLLKYERAGIGEYYGVDIAEVSINDARVRARNMKRRFKVFFRAQDSYGRHMDLGKE 93 (252)
T ss_dssp HHHHH---CCTTCEEEEETCTTTTTHHHHHHHTCSEEEEEESCHHHHHHHHHHHHTSCCSSEEEEEESCTTTSCCCCSSC
T ss_pred HHHHh---CCCcCEEEEecccCcHHHHHHHHcCCCeEEEecCCHHHHHHHHHHHHhcCCCcceEEEEcchhhhccccccc
Confidence 44555 45668999999 223346789998 45555553 245899999999854 32 2
Q ss_pred cceEeccccchhhhHHhhhhhhhhcCCCccchhhhhhcccccceeeeeeccC--ChHHHHHHHHHHHHHhccCC
Q 036440 74 VCMIPLRLGYSHIKIMIAFFIRLVVGRGRLHIFSWLNFMKRVINMQIIIHVF--GDEESVKILKICREAITSKA 145 (181)
Q Consensus 74 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~iLHdw--~D~~~~~iL~~~~~a~~~~g 145 (181)
.|++ ....++|.. +.+...++|++++..++|||
T Consensus 94 fD~V---------------------------------------~~~~~l~~~~~~~~~~~~~l~~i~~~Lk~gG 128 (252)
T d1ri5a_ 94 FDVI---------------------------------------SSQFSFHYAFSTSESLDIAQRNIARHLRPGG 128 (252)
T ss_dssp EEEE---------------------------------------EEESCGGGGGSSHHHHHHHHHHHHHTEEEEE
T ss_pred ceEE---------------------------------------EEcceeeecCCCHHHHHHHHHHHhceeCCCC
Confidence 5888 667777764 34566789999999999988
|
| >d2a14a1 c.66.1.15 (A:5-261) Indolethylamine N-methyltransferase, INMT {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arylamine N-methyltransferase domain: Indolethylamine N-methyltransferase, INMT species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.59 E-value=9.9e-05 Score=57.11 Aligned_cols=53 Identities=8% Similarity=-0.012 Sum_probs=44.1
Q ss_pred eeeeeeccCC--hHHHHHHHHHHHHHhccCC----------------------ccCCHHHHHHHHHhCCCeEEEEEE
Q 036440 117 NMQIIIHVFG--DEESVKILKICREAITSKA----------------------KLSTEKELESLFVEVHFHHYKITP 169 (181)
Q Consensus 117 ~l~~iLHdw~--D~~~~~iL~~~~~a~~~~g----------------------~eRt~~E~~~Ll~~aGf~~~~i~~ 169 (181)
+...+||... .++-...|+++++.|+||| .-.|.++++++|++|||+++.+..
T Consensus 157 ~~~~~l~~~~~~~~~~~~~l~~i~~~LkpGG~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~v~~~~~ 233 (257)
T d2a14a1 157 LTLLAMECACCSLDAYRAALCNLASLLKPGGHLVTTVTLRLPSYMVGKREFSCVALEKGEVEQAVLDAGFDIEQLLH 233 (257)
T ss_dssp EEESCHHHHCSSHHHHHHHHHHHHTTEEEEEEEEEEEESSCCEEEETTEEEECCCCCHHHHHHHHHHTTEEEEEEEE
T ss_pred eehhhHHHhcccHHHHHHHHHHHHhccCCCcEEEEEEecccccceeccccccccCCCHHHHHHHHHHCCCEEEEEEE
Confidence 7788888743 4567789999999999998 235899999999999999888753
|
| >d1ve3a1 c.66.1.43 (A:2-227) Hypothetical protein PH0226 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: CAC2371-like domain: Hypothetical protein PH0226 species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=97.55 E-value=0.00015 Score=54.50 Aligned_cols=82 Identities=13% Similarity=0.178 Sum_probs=64.7
Q ss_pred hcCCCeEEEec----------CCCCceEEEeec-hhhhhhhc-----cCCCceEEecCCCC-CCCC--cceEeccccchh
Q 036440 25 FERLGSLVDVG----------AFPCVKCTEFDQ-PHVVANLL-----DTNNLKYLADDFFQ-SIPP--VCMIPLRLGYSH 85 (181)
Q Consensus 25 ~~~~~~lvDvG----------~~P~l~~~~~Dl-P~Vv~~a~-----~~~ri~~~~gDff~-~~P~--~d~~~~~~~~~~ 85 (181)
+..-.+||||| +-++.+.+.+|+ |..++.++ ...++.++.+|..+ ++|. .|++
T Consensus 35 l~~~~~ILDiGcG~G~~~~~la~~~~~v~giD~S~~~i~~ak~~~~~~~~~~~~~~~d~~~l~~~~~~fD~I-------- 106 (226)
T d1ve3a1 35 MKKRGKVLDLACGVGGFSFLLEDYGFEVVGVDISEDMIRKAREYAKSRESNVEFIVGDARKLSFEDKTFDYV-------- 106 (226)
T ss_dssp CCSCCEEEEETCTTSHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCCCEEEECCTTSCCSCTTCEEEE--------
T ss_pred cCCCCEEEEECCCcchhhhhHhhhhcccccccccccchhhhhhhhccccccccccccccccccccCcCceEE--------
Confidence 34557899999 334668899998 56666554 24678899999886 3443 5888
Q ss_pred hhHHhhhhhhhhcCCCccchhhhhhcccccceeeeeeccCChHHHHHHHHHHHHHhccCC
Q 036440 86 IKIMIAFFIRLVVGRGRLHIFSWLNFMKRVINMQIIIHVFGDEESVKILKICREAITSKA 145 (181)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~iLHdw~D~~~~~iL~~~~~a~~~~g 145 (181)
++..++|.+++++..++|+++...++|||
T Consensus 107 -------------------------------~~~~~l~~~~~~d~~~~l~~i~~~LkpgG 135 (226)
T d1ve3a1 107 -------------------------------IFIDSIVHFEPLELNQVFKEVRRVLKPSG 135 (226)
T ss_dssp -------------------------------EEESCGGGCCHHHHHHHHHHHHHHEEEEE
T ss_pred -------------------------------EEecchhhCChhHHHHHHHHHHHHcCcCc
Confidence 78889999999888999999999999999
|
| >d1pjza_ c.66.1.36 (A:) Thiopurine S-methyltransferase {Pseudomonas syringae [TaxId: 317]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Thiopurine S-methyltransferase domain: Thiopurine S-methyltransferase species: Pseudomonas syringae [TaxId: 317]
Probab=97.50 E-value=0.00023 Score=51.85 Aligned_cols=105 Identities=6% Similarity=-0.002 Sum_probs=78.8
Q ss_pred cCCCeEEEec----------CCCCceEEEeec-hhhhhhhcc------------------CCCceEEecCCCCCCCC---
Q 036440 26 ERLGSLVDVG----------AFPCVKCTEFDQ-PHVVANLLD------------------TNNLKYLADDFFQSIPP--- 73 (181)
Q Consensus 26 ~~~~~lvDvG----------~~P~l~~~~~Dl-P~Vv~~a~~------------------~~ri~~~~gDff~~~P~--- 73 (181)
..-.+|||+| +--+.+.+.+|+ +..++.++. ...+++..+|+++..|.
T Consensus 19 ~~~~rvLd~GCG~G~~a~~la~~G~~V~gvD~S~~~i~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~ 98 (201)
T d1pjza_ 19 VPGARVLVPLCGKSQDMSWLSGQGYHVVGAELSEAAVERYFTERGEQPHITSQGDFKVYAAPGIEIWCGDFFALTARDIG 98 (201)
T ss_dssp CTTCEEEETTTCCSHHHHHHHHHCCEEEEEEECHHHHHHHHHHHCSCSEEEEETTEEEEECSSSEEEEECCSSSTHHHHH
T ss_pred CCCCEEEEecCcCCHHHHHHHHcCCceEeecccHHHHHHHHHHhccccchhhhhhhhhccccccceeccccccccccccc
Confidence 3447999999 334778999998 455555531 35678888888874332
Q ss_pred -cceEeccccchhhhHHhhhhhhhhcCCCccchhhhhhcccccceeeeeeccCChHHHHHHHHHHHHHhccCC-------
Q 036440 74 -VCMIPLRLGYSHIKIMIAFFIRLVVGRGRLHIFSWLNFMKRVINMQIIIHVFGDEESVKILKICREAITSKA------- 145 (181)
Q Consensus 74 -~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~iLHdw~D~~~~~iL~~~~~a~~~~g------- 145 (181)
-|.+ +.+.++|-.+++...+.+++++..++|||
T Consensus 99 ~~D~i---------------------------------------~~~~~l~~l~~~~~~~~~~~i~~~LkpgG~l~l~~~ 139 (201)
T d1pjza_ 99 HCAAF---------------------------------------YDRAAMIALPADMRERYVQHLEALMPQACSGLLITL 139 (201)
T ss_dssp SEEEE---------------------------------------EEESCGGGSCHHHHHHHHHHHHHHSCSEEEEEEEEE
T ss_pred ceeEE---------------------------------------EEEeeeEecchhhhHHHHHHHHHhcCCCcEEEEEEc
Confidence 3666 77889999999999999999999999999
Q ss_pred -----------ccCCHHHHHHHHHhCCCeEEEEEEc
Q 036440 146 -----------KLSTEKELESLFVEVHFHHYKITPL 170 (181)
Q Consensus 146 -----------~eRt~~E~~~Ll~~aGf~~~~i~~~ 170 (181)
...+.+|+++++. .+|.+..+...
T Consensus 140 ~~~~~~~~~p~~~~~~~el~~l~~-~~~~i~~~~~~ 174 (201)
T d1pjza_ 140 EYDQALLEGPPFSVPQTWLHRVMS-GNWEVTKVGGQ 174 (201)
T ss_dssp SSCSSSSSSCCCCCCHHHHHHTSC-SSEEEEEEEES
T ss_pred ccccccCCCccccCCHHHHHHHhC-CCcEEEEEEEe
Confidence 3467889999884 67876555433
|
| >d1g8sa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Fibrillarin homologue domain: Fibrillarin homologue species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=97.45 E-value=0.0002 Score=57.22 Aligned_cols=108 Identities=10% Similarity=0.039 Sum_probs=78.1
Q ss_pred hcCCCeEEEec------------CCCCceEEEeec-hhhhhhhc----cCCCceEEecCCCCCCCCc----ceEeccccc
Q 036440 25 FERLGSLVDVG------------AFPCVKCTEFDQ-PHVVANLL----DTNNLKYLADDFFQSIPPV----CMIPLRLGY 83 (181)
Q Consensus 25 ~~~~~~lvDvG------------~~P~l~~~~~Dl-P~Vv~~a~----~~~ri~~~~gDff~~~P~~----d~~~~~~~~ 83 (181)
++.-.+|||+| ..|+-+.+.+|+ |..++.+. ..+++..+-+|...+.+.. |+.
T Consensus 72 ikpG~~VLDlGcGsG~~~~~la~~~~~g~V~aVDiS~~~i~~a~~~a~~~~ni~~i~~d~~~~~~~~~~~~~v~------ 145 (230)
T d1g8sa_ 72 IKRDSKILYLGASAGTTPSHVADIADKGIVYAIEYAPRIMRELLDACAERENIIPILGDANKPQEYANIVEKVD------ 145 (230)
T ss_dssp CCTTCEEEEESCCSSHHHHHHHHHTTTSEEEEEESCHHHHHHHHHHTTTCTTEEEEECCTTCGGGGTTTCCCEE------
T ss_pred CCCCCEEEEeCEEcCHHHHHHHHhCCCCEEEEEeCcHHHHHHHHHHHhhhcccceEEEeeccCcccccccceeE------
Confidence 34457899999 579889999998 66666553 3677888888877543322 333
Q ss_pred hhhhHHhhhhhhhhcCCCccchhhhhhcccccceeeeeeccCChHHHHHHHHHHHHHhccCC----------------cc
Q 036440 84 SHIKIMIAFFIRLVVGRGRLHIFSWLNFMKRVINMQIIIHVFGDEESVKILKICREAITSKA----------------KL 147 (181)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~iLHdw~D~~~~~iL~~~~~a~~~~g----------------~e 147 (181)
++-..+|.++ +...++++++..++||| .+
T Consensus 146 ---------------------------------~i~~~~~~~~--~~~~~l~~~~r~LKpgG~~~i~~k~~~~d~~~~~~ 190 (230)
T d1g8sa_ 146 ---------------------------------VIYEDVAQPN--QAEILIKNAKWFLKKGGYGMIAIKARSIDVTKDPK 190 (230)
T ss_dssp ---------------------------------EEEECCCSTT--HHHHHHHHHHHHEEEEEEEEEEEEGGGTCSSSCHH
T ss_pred ---------------------------------EeeccccchH--HHHHHHHHHHHhcccCceEEEEeeccccCCCCCHH
Confidence 4445566554 34567999999999999 23
Q ss_pred CCHHHHHHHHHhCCCeEEEEEEcCCC
Q 036440 148 STEKELESLFVEVHFHHYKITPLFGL 173 (181)
Q Consensus 148 Rt~~E~~~Ll~~aGf~~~~i~~~~~~ 173 (181)
.+.+|..+.|+++||++++...+.+.
T Consensus 191 ~~~~e~~~~L~~aGF~ive~idL~py 216 (230)
T d1g8sa_ 191 EIFKEQKEILEAGGFKIVDEVDIEPF 216 (230)
T ss_dssp HHHHHHHHHHHHHTEEEEEEEECTTT
T ss_pred HHHHHHHHHHHHcCCEEEEEecCCCC
Confidence 34678899999999999998887654
|
| >d2bzga1 c.66.1.36 (A:17-245) Thiopurine S-methyltransferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Thiopurine S-methyltransferase domain: Thiopurine S-methyltransferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.37 E-value=0.00043 Score=53.70 Aligned_cols=114 Identities=11% Similarity=-0.055 Sum_probs=83.4
Q ss_pred HHHHHHhhh--hhcCCCeEEEec----------CCCCceEEEeec-hhhhhhhc-----------------------cCC
Q 036440 15 SLALKYCKQ--IFERLGSLVDVG----------AFPCVKCTEFDQ-PHVVANLL-----------------------DTN 58 (181)
Q Consensus 15 ~~~l~~~~~--d~~~~~~lvDvG----------~~P~l~~~~~Dl-P~Vv~~a~-----------------------~~~ 58 (181)
+.+.+.+.. ....-.+|||+| +--+.+.+.+|+ |..++.+. ...
T Consensus 31 ~~l~~~~~~~l~~~~~~rvLd~GCG~G~~a~~LA~~G~~V~gvD~S~~ai~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ 110 (229)
T d2bzga1 31 QLLKKHLDTFLKGKSGLRVFFPLCGKAVEMKWFADRGHSVVGVEISELGIQEFFTEQNLSYSEEPITEIPGTKVFKSSSG 110 (229)
T ss_dssp HHHHHHHHHHHTTCCSCEEEETTCTTCTHHHHHHHTTCEEEEECSCHHHHHHHHHHTTCCEEEEECTTSTTCEEEEETTS
T ss_pred HHHHHHHHHhcCCCCCCEEEEeCCCCcHHHHHHHhCCCcEEEEeCCHHHHHHHHHHhhccccccchhcccccceeeecCC
Confidence 444444431 234457999999 445678999998 44554331 146
Q ss_pred CceEEecCCCCCCCC----cceEeccccchhhhHHhhhhhhhhcCCCccchhhhhhcccccceeeeeeccCChHHHHHHH
Q 036440 59 NLKYLADDFFQSIPP----VCMIPLRLGYSHIKIMIAFFIRLVVGRGRLHIFSWLNFMKRVINMQIIIHVFGDEESVKIL 134 (181)
Q Consensus 59 ri~~~~gDff~~~P~----~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~iLHdw~D~~~~~iL 134 (181)
++++..+|+|+-.|. .|++ +-+.++|..+.++..+.+
T Consensus 111 ~v~~~~~d~~~l~~~~~~~fd~i---------------------------------------~~~~~l~~~~~~~r~~~~ 151 (229)
T d2bzga1 111 NISLYCCSIFDLPRTNIGKFDMI---------------------------------------WDRGALVAINPGDRKCYA 151 (229)
T ss_dssp SEEEEESCGGGGGGSCCCCEEEE---------------------------------------EESSSTTTSCGGGHHHHH
T ss_pred cEEEEEcchhhccccccCceeEE---------------------------------------EEEEEEEeccchhhHHHH
Confidence 899999999974332 4777 778899999999999999
Q ss_pred HHHHHHhccCC------------------ccCCHHHHHHHHHhCCCeEEEEE
Q 036440 135 KICREAITSKA------------------KLSTEKELESLFVEVHFHHYKIT 168 (181)
Q Consensus 135 ~~~~~a~~~~g------------------~eRt~~E~~~Ll~~aGf~~~~i~ 168 (181)
++++..++||| .-.|.+|++++++. +|.+..+.
T Consensus 152 ~~~~~~LkpgG~~~l~~~~~~~~~~~gpp~~~~~~el~~lf~~-~~~i~~le 202 (229)
T d2bzga1 152 DTMFSLLGKKFQYLLCVLSYDPTKHPGPPFYVPHAEIERLFGK-ICNIRCLE 202 (229)
T ss_dssp HHHHHTEEEEEEEEEEEEECCTTTCCCSSCCCCHHHHHHHHTT-TEEEEEEE
T ss_pred HHHHhhcCCcceEEEEEcccCCCCCCCCCCCCCHHHHHHHhcC-CCEEEEEE
Confidence 99999999999 12589999999965 77765543
|
| >d1kpga_ c.66.1.18 (A:) CmaA1 {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Mycolic acid cyclopropane synthase domain: CmaA1 species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=97.30 E-value=0.0014 Score=53.87 Aligned_cols=137 Identities=18% Similarity=0.148 Sum_probs=76.8
Q ss_pred HHHHHhhhhhcCCCeEEEec------------CCCCceEEEeechh-hhh-------hhccCCCceEEecCCCCCCCC-c
Q 036440 16 LALKYCKQIFERLGSLVDVG------------AFPCVKCTEFDQPH-VVA-------NLLDTNNLKYLADDFFQSIPP-V 74 (181)
Q Consensus 16 ~~l~~~~~d~~~~~~lvDvG------------~~P~l~~~~~DlP~-Vv~-------~a~~~~ri~~~~gDff~~~P~-~ 74 (181)
.+++.. +.+.-.+||||| ++ +++.+.+++-. -++ .+...+++++..+|+-+ +|. .
T Consensus 53 ~~~~~l--~l~~G~~VLDiGCG~G~~a~~~a~~~-g~~v~git~s~~Q~~~a~~~~~~~g~~~~v~~~~~d~~~-~~~~f 128 (285)
T d1kpga_ 53 LALGKL--GLQPGMTLLDVGCGWGATMMRAVEKY-DVNVVGLTLSKNQANHVQQLVANSENLRSKRVLLAGWEQ-FDEPV 128 (285)
T ss_dssp HHHTTT--TCCTTCEEEEETCTTSHHHHHHHHHH-CCEEEEEESCHHHHHHHHHHHHTCCCCSCEEEEESCGGG-CCCCC
T ss_pred HHHHHc--CCCCCCEEEEecCcchHHHHHHHhcC-CcceEEEeccHHHHHHHHHHHHhhhhhhhhHHHHhhhhc-ccccc
Confidence 344444 456668999999 66 47888888743 222 22357899999999754 344 4
Q ss_pred ceEeccccchhh--hHHhhhhhhh----hcCCCccchhhhhhcccccceeeeeeccCC----------hHHHHHHHHHHH
Q 036440 75 CMIPLRLGYSHI--KIMIAFFIRL----VVGRGRLHIFSWLNFMKRVINMQIIIHVFG----------DEESVKILKICR 138 (181)
Q Consensus 75 d~~~~~~~~~~~--~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~l~~iLHdw~----------D~~~~~iL~~~~ 138 (181)
|.+-.--.+-|+ +-.-+||-++ .+|+ .+++..|.+.-+ ......-..-+.
T Consensus 129 D~i~si~~~eh~~~~~~~~~~~~~~r~LkpgG--------------~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~fi~ 194 (285)
T d1kpga_ 129 DRIVSIGAFEHFGHERYDAFFSLAHRLLPADG--------------VMLLHTITGLHPKEIHERGLPMSFTFARFLKFIV 194 (285)
T ss_dssp SEEEEESCGGGTCTTTHHHHHHHHHHHSCTTC--------------EEEEEEEEECCHHHHTTTTCSCHHHHHHHHHHHH
T ss_pred cceeeehhhhhcCchhHHHHHHHHHhhcCCCC--------------cEEEEEEeccCchhhccccCCcchhhhchhhHHH
Confidence 544000001122 1112233211 3333 122333332111 112223333455
Q ss_pred HHhccCCccCCHHHHHHHHHhCCCeEEEEEEc
Q 036440 139 EAITSKAKLSTEKELESLFVEVHFHHYKITPL 170 (181)
Q Consensus 139 ~a~~~~g~eRt~~E~~~Ll~~aGf~~~~i~~~ 170 (181)
.-+-|+|...|..++..+++++||+++.+..+
T Consensus 195 kyiFpgg~lPsl~~~~~~~e~agf~v~~~~~~ 226 (285)
T d1kpga_ 195 TEIFPGGRLPSIPMVQECASANGFTVTRVQSL 226 (285)
T ss_dssp HHTSTTCCCCCHHHHHHHHHTTTCEEEEEEEC
T ss_pred HHhccCCCCCChhhHHHHHHHhchhhcccccc
Confidence 55667778889999999999999999988764
|
| >d2g72a1 c.66.1.15 (A:18-280) Phenylethanolamine N-methyltransferase, PNMTase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arylamine N-methyltransferase domain: Phenylethanolamine N-methyltransferase, PNMTase species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.20 E-value=0.0009 Score=53.26 Aligned_cols=52 Identities=8% Similarity=0.068 Sum_probs=43.2
Q ss_pred eeeeeeccCC--hHHHHHHHHHHHHHhccCC----------------------ccCCHHHHHHHHHhCCCeEEEEE
Q 036440 117 NMQIIIHVFG--DEESVKILKICREAITSKA----------------------KLSTEKELESLFVEVHFHHYKIT 168 (181)
Q Consensus 117 ~l~~iLHdw~--D~~~~~iL~~~~~a~~~~g----------------------~eRt~~E~~~Ll~~aGf~~~~i~ 168 (181)
++..+||.-. .++-.+.|++++..++||| ...|.+|++++|+++||+++++.
T Consensus 162 ~~~~~l~~i~~~~~~~~~~l~~~~~~LkPGG~li~~~~~~~~~~~~~~~~~~~~~~t~e~v~~~l~~aGf~v~~~~ 237 (263)
T d2g72a1 162 VSAFCLEAVSPDLASFQRALDHITTLLRPGGHLLLIGALEESWYLAGEARLTVVPVSEEEVREALVRSGYKVRDLR 237 (263)
T ss_dssp EEESCHHHHCSSHHHHHHHHHHHHTTEEEEEEEEEEEEESCCEEEETTEEEECCCCCHHHHHHHHHHTTEEEEEEE
T ss_pred eeHHHHHHHccCHHHHHHHHHHHHHHcCCCCEEEEecccCCcccccCCcccccCCCCHHHHHHHHHHCCCeEEEEE
Confidence 7788887643 3456789999999999999 33699999999999999987654
|
| >d2nxca1 c.66.1.39 (A:1-254) PrmA-like protein TTHA0656 (TT0836) {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Ribosomal protein L11 methyltransferase PrmA domain: PrmA-like protein TTHA0656 (TT0836) species: Thermus thermophilus [TaxId: 274]
Probab=97.12 E-value=0.00061 Score=55.28 Aligned_cols=118 Identities=15% Similarity=0.096 Sum_probs=80.1
Q ss_pred HHHHHHhhhhhcCCCeEEEec----------CCCCceEEEeec-hhhhhhhcc-----CCCceEEecCCCCCCCC--cce
Q 036440 15 SLALKYCKQIFERLGSLVDVG----------AFPCVKCTEFDQ-PHVVANLLD-----TNNLKYLADDFFQSIPP--VCM 76 (181)
Q Consensus 15 ~~~l~~~~~d~~~~~~lvDvG----------~~P~l~~~~~Dl-P~Vv~~a~~-----~~ri~~~~gDff~~~P~--~d~ 76 (181)
...++....-...-.+|+|+| +-.+.+.+.+|. |..++.++. .-++++..+|+.+..|. .|+
T Consensus 108 ~l~l~~l~~~~~~g~~VLDiGcGsG~l~i~aa~~g~~V~gvDis~~av~~A~~na~~n~~~~~~~~~d~~~~~~~~~fD~ 187 (254)
T d2nxca1 108 RLALKALARHLRPGDKVLDLGTGSGVLAIAAEKLGGKALGVDIDPMVLPQAEANAKRNGVRPRFLEGSLEAALPFGPFDL 187 (254)
T ss_dssp HHHHHHHHHHCCTTCEEEEETCTTSHHHHHHHHTTCEEEEEESCGGGHHHHHHHHHHTTCCCEEEESCHHHHGGGCCEEE
T ss_pred hHHHHHHHhhcCccCEEEEcccchhHHHHHHHhcCCEEEEEECChHHHHHHHHHHHHcCCceeEEeccccccccccccch
Confidence 444444432233457999999 444678899998 566665542 33567888888765553 576
Q ss_pred EeccccchhhhHHhhhhhhhhcCCCccchhhhhhcccccceeeeeeccCChHHHHHHHHHHHHHhccCC-------ccCC
Q 036440 77 IPLRLGYSHIKIMIAFFIRLVVGRGRLHIFSWLNFMKRVINMQIIIHVFGDEESVKILKICREAITSKA-------KLST 149 (181)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~iLHdw~D~~~~~iL~~~~~a~~~~g-------~eRt 149 (181)
+ +. + ..-+.-.++++.+++.++||| ....
T Consensus 188 V---------------------------------------~a-n----i~~~~l~~l~~~~~~~LkpGG~lilSgil~~~ 223 (254)
T d2nxca1 188 L---------------------------------------VA-N----LYAELHAALAPRYREALVPGGRALLTGILKDR 223 (254)
T ss_dssp E---------------------------------------EE-E----CCHHHHHHHHHHHHHHEEEEEEEEEEEEEGGG
T ss_pred h---------------------------------------hh-c----cccccHHHHHHHHHHhcCCCcEEEEEecchhh
Confidence 6 22 2 223445678889999999999 3445
Q ss_pred HHHHHHHHHhCCCeEEEEEEcCCCCeE
Q 036440 150 EKELESLFVEVHFHHYKITPLFGLPSL 176 (181)
Q Consensus 150 ~~E~~~Ll~~aGf~~~~i~~~~~~~~v 176 (181)
.+++.+.++++||+.++.....+...+
T Consensus 224 ~~~v~~~~~~~Gf~~~~~~~~~~Wv~l 250 (254)
T d2nxca1 224 APLVREAMAGAGFRPLEEAAEGEWVLL 250 (254)
T ss_dssp HHHHHHHHHHTTCEEEEEEEETTEEEE
T ss_pred HHHHHHHHHHCCCEEEEEEEECCEEEE
Confidence 788999999999999988776655433
|
| >d1jqea_ c.66.1.19 (A:) Histamine methyltransferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Histamine methyltransferase domain: Histamine methyltransferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.00 E-value=0.00063 Score=53.81 Aligned_cols=49 Identities=14% Similarity=0.163 Sum_probs=41.2
Q ss_pred eeeeeeccCChHHHHHHHHHHHHHhccCC------------------------------ccCCHHHHHHHHHhCCCeEEE
Q 036440 117 NMQIIIHVFGDEESVKILKICREAITSKA------------------------------KLSTEKELESLFVEVHFHHYK 166 (181)
Q Consensus 117 ~l~~iLHdw~D~~~~~iL~~~~~a~~~~g------------------------------~eRt~~E~~~Ll~~aGf~~~~ 166 (181)
+..++||.++|-. +.|++++..++||| +..+.+++..+|.++||..++
T Consensus 128 ~~~~~l~~~~d~~--~~l~~l~~~LkpgG~l~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~~G~~~~~ 205 (280)
T d1jqea_ 128 HMIQMLYYVKDIP--ATLKFFHSLLGTNAKMLIIVVSGSSGWDKLWKKYGSRFPQDDLCQYITSDDLTQMLDNLGLKYEC 205 (280)
T ss_dssp EEESCGGGCSCHH--HHHHHHHHTEEEEEEEEEEEECTTSHHHHHHHHHGGGSCCCTTSCCCCHHHHHHHHHHHTCCEEE
T ss_pred EEccceecCCCHH--HHHHHHHhhCCCCCEEEEEEecCcchHHHHHHHHHHhcCCCcccccCCHHHHHHHHHHCCCceEE
Confidence 8889999887653 68999999999988 568899999999999998654
Q ss_pred E
Q 036440 167 I 167 (181)
Q Consensus 167 i 167 (181)
.
T Consensus 206 ~ 206 (280)
T d1jqea_ 206 Y 206 (280)
T ss_dssp E
T ss_pred E
Confidence 3
|
| >d1kpia_ c.66.1.18 (A:) CmaA2 {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Mycolic acid cyclopropane synthase domain: CmaA2 species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=96.93 E-value=0.0048 Score=50.66 Aligned_cols=34 Identities=6% Similarity=0.058 Sum_probs=28.7
Q ss_pred HHHHhccCCccCCHHHHHHHHHhCCCeEEEEEEc
Q 036440 137 CREAITSKAKLSTEKELESLFVEVHFHHYKITPL 170 (181)
Q Consensus 137 ~~~a~~~~g~eRt~~E~~~Ll~~aGf~~~~i~~~ 170 (181)
+..-+-|+|...|..++...++++||++..+...
T Consensus 199 i~kyiFpgg~lps~~~~~~~~e~~gl~v~~~~~~ 232 (291)
T d1kpia_ 199 ILTEIFPGGRLPRISQVDYYSSNAGWKVERYHRI 232 (291)
T ss_dssp HHHHTCTTCCCCCHHHHHHHHHHHTCEEEEEEEC
T ss_pred HHHHhcCCCCCCCHHHHHhhhcccccccceeeec
Confidence 4555678888999999999999999999887665
|
| >d1o54a_ c.66.1.13 (A:) Hypothetical protein TM0748 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: tRNA(1-methyladenosine) methyltransferase-like domain: Hypothetical protein TM0748 species: Thermotoga maritima [TaxId: 2336]
Probab=96.67 E-value=0.004 Score=50.48 Aligned_cols=110 Identities=11% Similarity=0.108 Sum_probs=77.0
Q ss_pred HHHHHHhhhhhcCCCeEEEec-------------CCCCceEEEeec-hhhhhhhc-------cCCCceEEecCCCCCCCC
Q 036440 15 SLALKYCKQIFERLGSLVDVG-------------AFPCVKCTEFDQ-PHVVANLL-------DTNNLKYLADDFFQSIPP 73 (181)
Q Consensus 15 ~~~l~~~~~d~~~~~~lvDvG-------------~~P~l~~~~~Dl-P~Vv~~a~-------~~~ri~~~~gDff~~~P~ 73 (181)
..++... |...-.+|+|+| ..|..+.+.+|. |+.++.+. ..+++.+..+|..+.++.
T Consensus 93 ~~Ii~~l--~i~pG~~VLDiG~GsG~lt~~lA~~~~~~G~V~~vD~~~~~~~~A~~~~~~~g~~~~v~~~~~d~~~~~~~ 170 (266)
T d1o54a_ 93 SFIAMML--DVKEGDRIIDTGVGSGAMCAVLARAVGSSGKVFAYEKREEFAKLAESNLTKWGLIERVTIKVRDISEGFDE 170 (266)
T ss_dssp HHHHHHT--TCCTTCEEEEECCTTSHHHHHHHHHTTTTCEEEEECCCHHHHHHHHHHHHHTTCGGGEEEECCCGGGCCSC
T ss_pred HHHHHhh--CCCCCCEEEECCCCCCHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhccccCcEEEeccccccccc
Confidence 4555666 677889999999 468899999998 56665553 357888888887666554
Q ss_pred cceEeccccchhhhHHhhhhhhhhcCCCccchhhhhhcccccceeeeeeccCChHHHHHHHHHHHHHhccCCc----cCC
Q 036440 74 VCMIPLRLGYSHIKIMIAFFIRLVVGRGRLHIFSWLNFMKRVINMQIIIHVFGDEESVKILKICREAITSKAK----LST 149 (181)
Q Consensus 74 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~iLHdw~D~~~~~iL~~~~~a~~~~g~----eRt 149 (181)
.+ ...|+||.+|.. +.|+++...++|||+ ..+
T Consensus 171 ~~------------------------------------------~D~V~~d~p~p~--~~l~~~~~~LKpGG~lv~~~P~ 206 (266)
T d1o54a_ 171 KD------------------------------------------VDALFLDVPDPW--NYIDKCWEALKGGGRFATVCPT 206 (266)
T ss_dssp CS------------------------------------------EEEEEECCSCGG--GTHHHHHHHEEEEEEEEEEESS
T ss_pred cc------------------------------------------eeeeEecCCCHH--HHHHHHHhhcCCCCEEEEEeCc
Confidence 21 123345555543 479999999999993 345
Q ss_pred HHHHH---HHHHhCCCeEEEEEEc
Q 036440 150 EKELE---SLFVEVHFHHYKITPL 170 (181)
Q Consensus 150 ~~E~~---~Ll~~aGf~~~~i~~~ 170 (181)
.++++ +.|+++||.+.++..+
T Consensus 207 ~~Qv~~~~~~l~~~gF~~i~~~E~ 230 (266)
T d1o54a_ 207 TNQVQETLKKLQELPFIRIEVWES 230 (266)
T ss_dssp HHHHHHHHHHHHHSSEEEEEEECC
T ss_pred ccHHHHHHHHHHHCCceeEEEEEE
Confidence 55544 4567789998887753
|
| >d2b3ta1 c.66.1.30 (A:2-275) N5-glutamine methyltransferase, HemK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: N5-glutamine methyltransferase, HemK domain: N5-glutamine methyltransferase, HemK species: Escherichia coli [TaxId: 562]
Probab=96.66 E-value=0.0037 Score=51.28 Aligned_cols=138 Identities=17% Similarity=0.179 Sum_probs=83.9
Q ss_pred cCCCeEEEec------------CCCCceEEEeec-hhhhhhhcc------CCCceEEecCCCCCCCC--cceEeccccch
Q 036440 26 ERLGSLVDVG------------AFPCVKCTEFDQ-PHVVANLLD------TNNLKYLADDFFQSIPP--VCMIPLRLGYS 84 (181)
Q Consensus 26 ~~~~~lvDvG------------~~P~l~~~~~Dl-P~Vv~~a~~------~~ri~~~~gDff~~~P~--~d~~~~~~~~~ 84 (181)
+.-.+++|+| .+|+.+++..|. |..++.|.. -.||+++.+|+|+++|. .|++.-+-=|-
T Consensus 107 ~~~~~vlDlGtGSG~I~i~la~~~p~~~v~avDis~~Al~~A~~Na~~~~~~~v~~~~~d~~~~~~~~~fDlIvsNPPYi 186 (274)
T d2b3ta1 107 EQPCRILDLGTGTGAIALALASERPDCEIIAVDRMPDAVSLAQRNAQHLAIKNIHILQSDWFSALAGQQFAMIVSNPPYI 186 (274)
T ss_dssp SSCCEEEEETCTTSHHHHHHHHHCTTSEEEEECSSHHHHHHHHHHHHHHTCCSEEEECCSTTGGGTTCCEEEEEECCCCB
T ss_pred ccccceeeeehhhhHHHHHHHhhCCcceeeeccchhHHHhHHHHHHHHhCcccceeeecccccccCCCceeEEEecchhh
Confidence 3446799999 899999999998 666665542 35899999999998875 68873332221
Q ss_pred hhhHHhhhhhhhhcCCCccchhhhhhcccccceeeeeeccCChHHHHHHHHHHHHHhccCC------ccCCHHHHHHHHH
Q 036440 85 HIKIMIAFFIRLVVGRGRLHIFSWLNFMKRVINMQIIIHVFGDEESVKILKICREAITSKA------KLSTEKELESLFV 158 (181)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~iLHdw~D~~~~~iL~~~~~a~~~~g------~eRt~~E~~~Ll~ 158 (181)
-..-+-. ...+.+|=...-+.. .+-+-+--.+|++.....++++| -....++..++++
T Consensus 187 ~~~~~~~-------------~~~v~~~eP~~AL~~---g~dGl~~~~~i~~~a~~~L~~~G~l~lEig~~q~~~v~~~l~ 250 (274)
T d2b3ta1 187 DEQDPHL-------------QQGDVRFEPLTALVA---ADSGMADIVHIIEQSRNALVSGGFLLLEHGWQQGEAVRQAFI 250 (274)
T ss_dssp CTTCHHH-------------HSSGGGSSCSTTTBC---HHHHTHHHHHHHHHHGGGEEEEEEEEEECCSSCHHHHHHHHH
T ss_pred hhhhhcc-------------cccccccchhhhccc---ccccchHHHHHHHHHHHhcCCCCEEEEEECchHHHHHHHHHH
Confidence 0000000 000000000000000 00001234578888888899998 3345688999999
Q ss_pred hCCCeEEEEE-EcCCCCeEEEE
Q 036440 159 EVHFHHYKIT-PLFGLPSLIEV 179 (181)
Q Consensus 159 ~aGf~~~~i~-~~~~~~~viE~ 179 (181)
+.||..+++. -..|..-+|-+
T Consensus 251 ~~gf~~i~~~kDl~g~~R~v~~ 272 (274)
T d2b3ta1 251 LAGYHDVETCRDYGDNERVTLG 272 (274)
T ss_dssp HTTCTTCCEEECTTSSEEEEEE
T ss_pred HCCCCeEEEEECCCCCceEEEE
Confidence 9999988766 45666666654
|
| >d1zx0a1 c.66.1.16 (A:8-236) Guanidinoacetate methyltransferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Guanidinoacetate methyltransferase domain: Guanidinoacetate methyltransferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.50 E-value=0.00095 Score=51.96 Aligned_cols=105 Identities=15% Similarity=0.083 Sum_probs=66.2
Q ss_pred CCCeEEEec-----------CCCCceEEEeec-hhhhhhhcc-----CCCceEEecCCCC---CCCC--cceEeccccch
Q 036440 27 RLGSLVDVG-----------AFPCVKCTEFDQ-PHVVANLLD-----TNNLKYLADDFFQ---SIPP--VCMIPLRLGYS 84 (181)
Q Consensus 27 ~~~~lvDvG-----------~~P~l~~~~~Dl-P~Vv~~a~~-----~~ri~~~~gDff~---~~P~--~d~~~~~~~~~ 84 (181)
.-++||||| +++..+.+.+|+ |.+++.++. ..++..+.+|+.+ ++|. .|.+..+.-
T Consensus 53 ~g~~VLdIGcG~G~~a~~~a~~~~~~v~~id~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~i~fD~~-- 130 (229)
T d1zx0a1 53 KGGRVLEVGFGMAIAASKVQEAPIDEHWIIECNDGVFQRLRDWAPRQTHKVIPLKGLWEDVAPTLPDGHFDGILYDTY-- 130 (229)
T ss_dssp TCEEEEEECCTTSHHHHHHHTSCEEEEEEEECCHHHHHHHHHHGGGCSSEEEEEESCHHHHGGGSCTTCEEEEEECCC--
T ss_pred CCCeEEEeeccchHHHHHHHHcCCCeEEEeCCCHHHHHHHHHHhhhcccccccccccccccccccccccccceeeccc--
Confidence 346899999 544457788897 567776642 4567777777652 4554 455511110
Q ss_pred hhhHHhhhhhhhhcCCCccchhhhhhcccccceeeeeeccCChHHHHHHHHHHHHHhccCC-------------------
Q 036440 85 HIKIMIAFFIRLVVGRGRLHIFSWLNFMKRVINMQIIIHVFGDEESVKILKICREAITSKA------------------- 145 (181)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~iLHdw~D~~~~~iL~~~~~a~~~~g------------------- 145 (181)
.....++.+.| -.+.+++++..|+|||
T Consensus 131 --------------------------------~~~~~~~~~~~--~~~~~~~~~r~LkpGG~~~~~~~~~~~~~~~~~~~ 176 (229)
T d1zx0a1 131 --------------------------------PLSEETWHTHQ--FNFIKNHAFRLLKPGGVLTYCNLTSWGELMKSKYS 176 (229)
T ss_dssp --------------------------------CCBGGGTTTHH--HHHHHHTHHHHEEEEEEEEECCHHHHHHHTTTTCS
T ss_pred --------------------------------ccccccccccC--HHHHHHHHHHHcCCCcEEEEEecCCcchhhhhhhh
Confidence 23344444443 4458888999999999
Q ss_pred --ccCCHHHHHHHHHhCCCeEEEE
Q 036440 146 --KLSTEKELESLFVEVHFHHYKI 167 (181)
Q Consensus 146 --~eRt~~E~~~Ll~~aGf~~~~i 167 (181)
.....+.+...|.++||+...+
T Consensus 177 ~~~~~~~~~~~~~l~~agF~~~~i 200 (229)
T d1zx0a1 177 DITIMFEETQVPALLEAGFRRENI 200 (229)
T ss_dssp CHHHHHHHHTHHHHHHTTCCGGGE
T ss_pred hcchhhhhHHHHHHHHCCCeeEEE
Confidence 1223456677888999986544
|
| >d1nt2a_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Fibrillarin homologue domain: Fibrillarin homologue species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]
Probab=96.28 E-value=0.01 Score=46.12 Aligned_cols=109 Identities=14% Similarity=-0.022 Sum_probs=68.9
Q ss_pred hhcCCCeEEEec------------CCCCceEEEeec-hhhhhhhc----cCCCceEEecCCCCC-CCC--cceEeccccc
Q 036440 24 IFERLGSLVDVG------------AFPCVKCTEFDQ-PHVVANLL----DTNNLKYLADDFFQS-IPP--VCMIPLRLGY 83 (181)
Q Consensus 24 d~~~~~~lvDvG------------~~P~l~~~~~Dl-P~Vv~~a~----~~~ri~~~~gDff~~-~P~--~d~~~~~~~~ 83 (181)
+++.-.+|||+| ..|+.+.+.+|+ |..++.+. ..+++.++-+|.-+. .+. .|.+
T Consensus 53 ~lkpg~~VLDlGcG~G~~~~~la~~v~~g~V~gvDis~~~i~~a~~~a~~~~ni~~i~~d~~~~~~~~~~~~~v------ 126 (209)
T d1nt2a_ 53 KLRGDERVLYLGAASGTTVSHLADIVDEGIIYAVEYSAKPFEKLLELVRERNNIIPLLFDASKPWKYSGIVEKV------ 126 (209)
T ss_dssp CCCSSCEEEEETCTTSHHHHHHHHHTTTSEEEEECCCHHHHHHHHHHHHHCSSEEEECSCTTCGGGTTTTCCCE------
T ss_pred CCCCCCEEEEeCCcCCHHHHHHHHhccCCeEEEEeCCHHHHHHHHHHhhccCCceEEEeeccCccccccccceE------
Confidence 355567999999 458889999998 67776553 357899998887653 222 1222
Q ss_pred hhhhHHhhhhhhhhcCCCccchhhhhhcccccceeeeeeccCChHHHHHHHHHHHHHhccCCc----------------c
Q 036440 84 SHIKIMIAFFIRLVVGRGRLHIFSWLNFMKRVINMQIIIHVFGDEESVKILKICREAITSKAK----------------L 147 (181)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~iLHdw~D~~~~~iL~~~~~a~~~~g~----------------e 147 (181)
..+-+.++.+. +...+|++++..++|||+ +
T Consensus 127 --------------------------------d~v~~~~~~~~--~~~~~l~~~~~~LkpgG~l~i~~~~~~~d~~~~~~ 172 (209)
T d1nt2a_ 127 --------------------------------DLIYQDIAQKN--QIEILKANAEFFLKEKGEVVIMVKARSIDSTAEPE 172 (209)
T ss_dssp --------------------------------EEEEECCCSTT--HHHHHHHHHHHHEEEEEEEEEEEEHHHHCTTSCHH
T ss_pred --------------------------------EEEEecccChh--hHHHHHHHHHHHhccCCeEEEEEEccccCCCCCHH
Confidence 01111222233 345689999999999991 1
Q ss_pred CCHHHHHHHHHhCCCeEEEEEEcCCC
Q 036440 148 STEKELESLFVEVHFHHYKITPLFGL 173 (181)
Q Consensus 148 Rt~~E~~~Ll~~aGf~~~~i~~~~~~ 173 (181)
...++....+ ++||+..+...+.+.
T Consensus 173 ~~~~~~~~~l-~~gf~i~E~i~L~P~ 197 (209)
T d1nt2a_ 173 EVFKSVLKEM-EGDFKIVKHGSLMPY 197 (209)
T ss_dssp HHHHHHHHHH-HTTSEEEEEEECTTT
T ss_pred HHHHHHHHHH-HcCCEEEEEEccCCC
Confidence 1223333334 379999988766543
|
| >d2avna1 c.66.1.41 (A:1-246) Hypothetical methyltransferase TM1389 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Hypothetical methyltransferase TM1389 species: Thermotoga maritima [TaxId: 2336]
Probab=96.09 E-value=0.0049 Score=46.33 Aligned_cols=80 Identities=8% Similarity=0.122 Sum_probs=56.9
Q ss_pred hcCCCeEEEec----------CCCCceEEEeec-hhhhhhhccCCCceEEecCCCC-CCCC--cceEeccccchhhhHHh
Q 036440 25 FERLGSLVDVG----------AFPCVKCTEFDQ-PHVVANLLDTNNLKYLADDFFQ-SIPP--VCMIPLRLGYSHIKIMI 90 (181)
Q Consensus 25 ~~~~~~lvDvG----------~~P~l~~~~~Dl-P~Vv~~a~~~~ri~~~~gDff~-~~P~--~d~~~~~~~~~~~~~~~ 90 (181)
...-.+|||+| +-.+.+.+.+|. |..++.+.......++.+|+-+ ++|. -|++
T Consensus 40 ~~~~~~vLDiGcG~G~~~~~l~~~~~~v~giD~s~~~l~~a~~~~~~~~~~~~~~~l~~~~~~fD~i------------- 106 (246)
T d2avna1 40 LKNPCRVLDLGGGTGKWSLFLQERGFEVVLVDPSKEMLEVAREKGVKNVVEAKAEDLPFPSGAFEAV------------- 106 (246)
T ss_dssp CCSCCEEEEETCTTCHHHHHHHTTTCEEEEEESCHHHHHHHHHHTCSCEEECCTTSCCSCTTCEEEE-------------
T ss_pred cCCCCEEEEECCCCchhcccccccceEEEEeecccccccccccccccccccccccccccccccccce-------------
Confidence 34557899999 445678999998 6677776643333456677754 2433 4766
Q ss_pred hhhhhhhcCCCccchhhhhhcccccce-eeeeeccCChHHHHHHHHHHHHHhccCC
Q 036440 91 AFFIRLVVGRGRLHIFSWLNFMKRVIN-MQIIIHVFGDEESVKILKICREAITSKA 145 (181)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-l~~iLHdw~D~~~~~iL~~~~~a~~~~g 145 (181)
+ +..++|..+|.+ ++|++++..++|||
T Consensus 107 --------------------------i~~~~~~~~~~d~~--~~l~~i~r~Lk~gG 134 (246)
T d2avna1 107 --------------------------LALGDVLSYVENKD--KAFSEIRRVLVPDG 134 (246)
T ss_dssp --------------------------EECSSHHHHCSCHH--HHHHHHHHHEEEEE
T ss_pred --------------------------eeecchhhhhhhHH--HHHHHHHhhcCcCc
Confidence 4 467888887765 48999999999999
|
| >d1xvaa_ c.66.1.5 (A:) Glycine N-methyltransferase {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Glycine N-methyltransferase domain: Glycine N-methyltransferase species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=95.95 E-value=0.0088 Score=47.48 Aligned_cols=82 Identities=12% Similarity=0.125 Sum_probs=52.3
Q ss_pred cCCCeEEEec----------CCCCceEEEeec-hhhhhhhcc----------CCCceEEecCCCC---CCCC---cceEe
Q 036440 26 ERLGSLVDVG----------AFPCVKCTEFDQ-PHVVANLLD----------TNNLKYLADDFFQ---SIPP---VCMIP 78 (181)
Q Consensus 26 ~~~~~lvDvG----------~~P~l~~~~~Dl-P~Vv~~a~~----------~~ri~~~~gDff~---~~P~---~d~~~ 78 (181)
...++|||+| +-.+.+.+.+|+ |..++.|.. ..+......||.. .+|. .|.+
T Consensus 55 ~~~~~vLD~GcG~G~~~~~la~~g~~v~gvD~S~~ml~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fd~v- 133 (292)
T d1xvaa_ 55 HGCHRVLDVACGTGVDSIMLVEEGFSVTSVDASDKMLKYALKERWNRRKEPAFDKWVIEEANWLTLDKDVPAGDGFDAV- 133 (292)
T ss_dssp TTCCEEEESSCTTSHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTTSHHHHTCEEEECCGGGHHHHSCCTTCEEEE-
T ss_pred cCCCEEEEecCCCcHHHHHHHHcCCeeeeccCchHHHHHHHHHHHhcccccccceeeeeeccccccccccCCCCCceEE-
Confidence 3457999999 333678999998 455555431 1245566677763 2443 3544
Q ss_pred ccccchhhhHHhhhhhhhhcCCCccchhhhhhcccccceeeeeeccCC-----hHHHHHHHHHHHHHhccCC
Q 036440 79 LRLGYSHIKIMIAFFIRLVVGRGRLHIFSWLNFMKRVINMQIIIHVFG-----DEESVKILKICREAITSKA 145 (181)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~iLHdw~-----D~~~~~iL~~~~~a~~~~g 145 (181)
+.+..+++... .++..++|+++++.++|||
T Consensus 134 -------------------------------------~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG 168 (292)
T d1xvaa_ 134 -------------------------------------ICLGNSFAHLPDSKGDQSEHRLALKNIASMVRPGG 168 (292)
T ss_dssp -------------------------------------EECSSCGGGSCCTTSSSHHHHHHHHHHHHTEEEEE
T ss_pred -------------------------------------EEecCchhhcCCcccChHHHHHHHHHHHHHcCcCc
Confidence 13334444433 3567889999999999999
|
| >d1l3ia_ c.66.1.22 (A:) Precorrin-6Y methyltransferase (CbiT) {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Precorrin-6Y methyltransferase (CbiT) domain: Precorrin-6Y methyltransferase (CbiT) species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]
Probab=95.75 E-value=0.011 Score=44.23 Aligned_cols=102 Identities=20% Similarity=0.225 Sum_probs=70.3
Q ss_pred HHHHHhhhhhcCCCeEEEec----------CCCCceEEEeec-hhhhhhhc-------cCCCceEEecCCCCC---CCCc
Q 036440 16 LALKYCKQIFERLGSLVDVG----------AFPCVKCTEFDQ-PHVVANLL-------DTNNLKYLADDFFQS---IPPV 74 (181)
Q Consensus 16 ~~l~~~~~d~~~~~~lvDvG----------~~P~l~~~~~Dl-P~Vv~~a~-------~~~ri~~~~gDff~~---~P~~ 74 (181)
.+++.. ....-.+|+|+| +...-+.+.+|. |+.++.++ .++||+++.+|+.+. .+..
T Consensus 24 ~il~~l--~~~~g~~VLDiGcGsG~~s~~lA~~~~~V~avD~~~~~l~~a~~n~~~~gl~~~v~~~~gda~~~~~~~~~~ 101 (186)
T d1l3ia_ 24 LIMCLA--EPGKNDVAVDVGCGTGGVTLELAGRVRRVYAIDRNPEAISTTEMNLQRHGLGDNVTLMEGDAPEALCKIPDI 101 (186)
T ss_dssp HHHHHH--CCCTTCEEEEESCTTSHHHHHHHTTSSEEEEEESCHHHHHHHHHHHHHTTCCTTEEEEESCHHHHHTTSCCE
T ss_pred HHHHhc--CCCCCCEEEEEECCeEcccccccccceEEEEecCCHHHHHHHHHHHHHcCCCcceEEEECchhhcccccCCc
Confidence 345555 566778999999 444557888998 66666554 358999999998753 3346
Q ss_pred ceEeccccchhhhHHhhhhhhhhcCCCccchhhhhhcccccceeeeeeccCChHHHHHHHHHHHHHhccCCc-------c
Q 036440 75 CMIPLRLGYSHIKIMIAFFIRLVVGRGRLHIFSWLNFMKRVINMQIIIHVFGDEESVKILKICREAITSKAK-------L 147 (181)
Q Consensus 75 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~iLHdw~D~~~~~iL~~~~~a~~~~g~-------e 147 (181)
|.+ ++....| .-.++++.+...++|+|+ .
T Consensus 102 D~v---------------------------------------~~~~~~~-----~~~~~~~~~~~~LkpgG~lvi~~~~~ 137 (186)
T d1l3ia_ 102 DIA---------------------------------------VVGGSGG-----ELQEILRIIKDKLKPGGRIIVTAILL 137 (186)
T ss_dssp EEE---------------------------------------EESCCTT-----CHHHHHHHHHHTEEEEEEEEEEECBH
T ss_pred CEE---------------------------------------EEeCccc-----cchHHHHHHHHHhCcCCEEEEEeecc
Confidence 777 3332222 235689999999999993 2
Q ss_pred CCHHHHHHHHHhCCCe
Q 036440 148 STEKELESLFVEVHFH 163 (181)
Q Consensus 148 Rt~~E~~~Ll~~aGf~ 163 (181)
-+..+..+.+.+.||.
T Consensus 138 e~~~~~~~~l~~~~~~ 153 (186)
T d1l3ia_ 138 ETKFEAMECLRDLGFD 153 (186)
T ss_dssp HHHHHHHHHHHHTTCC
T ss_pred ccHHHHHHHHHHcCCC
Confidence 2455677788888884
|
| >d1yb2a1 c.66.1.13 (A:6-255) Hypothetical protein Ta0852 {Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: tRNA(1-methyladenosine) methyltransferase-like domain: Hypothetical protein Ta0852 species: Thermoplasma acidophilum [TaxId: 2303]
Probab=95.67 E-value=0.017 Score=46.47 Aligned_cols=100 Identities=12% Similarity=0.074 Sum_probs=70.8
Q ss_pred hhcCCCeEEEec-------------CCCCceEEEeech-hhhhhhc-------cCCCceEEecCCCCCCCC--cceEecc
Q 036440 24 IFERLGSLVDVG-------------AFPCVKCTEFDQP-HVVANLL-------DTNNLKYLADDFFQSIPP--VCMIPLR 80 (181)
Q Consensus 24 d~~~~~~lvDvG-------------~~P~l~~~~~DlP-~Vv~~a~-------~~~ri~~~~gDff~~~P~--~d~~~~~ 80 (181)
|...-.+|||+| -.|.-+.+.+|.- +.++.|. ..+++++..+|+.+.+|. .|.+
T Consensus 82 ~i~pG~rVLEiG~GsG~lt~~la~~v~~~g~V~~vD~~e~~~~~A~~n~~~~~~~~nv~~~~~Di~~~~~~~~fD~V--- 158 (250)
T d1yb2a1 82 GLRPGMDILEVGVGSGNMSSYILYALNGKGTLTVVERDEDNLKKAMDNLSEFYDIGNVRTSRSDIADFISDQMYDAV--- 158 (250)
T ss_dssp CCCTTCEEEEECCTTSHHHHHHHHHHTTSSEEEEECSCHHHHHHHHHHHHTTSCCTTEEEECSCTTTCCCSCCEEEE---
T ss_pred CCCCcCEEEEeeeeCcHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHhcCCCceEEEEeeeecccccceeeee---
Confidence 555668999999 3588899999984 4455443 257999999999887765 5776
Q ss_pred ccchhhhHHhhhhhhhhcCCCccchhhhhhcccccceeeeeeccCChHHHHHHHHHHHHHhccCC----ccCCHHHHHHH
Q 036440 81 LGYSHIKIMIAFFIRLVVGRGRLHIFSWLNFMKRVINMQIIIHVFGDEESVKILKICREAITSKA----KLSTEKELESL 156 (181)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~iLHdw~D~~~~~iL~~~~~a~~~~g----~eRt~~E~~~L 156 (181)
++ |.++. .+.|..+.++++||| -..|.+|.+++
T Consensus 159 ------------------------------------~l-----d~p~p--~~~l~~~~~~LKpGG~lv~~~P~i~Qv~~~ 195 (250)
T d1yb2a1 159 ------------------------------------IA-----DIPDP--WNHVQKIASMMKPGSVATFYLPNFDQSEKT 195 (250)
T ss_dssp ------------------------------------EE-----CCSCG--GGSHHHHHHTEEEEEEEEEEESSHHHHHHH
T ss_pred ------------------------------------ee-----cCCch--HHHHHHHHHhcCCCceEEEEeCCcChHHHH
Confidence 32 22222 146899999999999 44566666665
Q ss_pred HH---hCCCeEEEEEE
Q 036440 157 FV---EVHFHHYKITP 169 (181)
Q Consensus 157 l~---~aGf~~~~i~~ 169 (181)
.+ ++||...++..
T Consensus 196 ~~~l~~~gf~~i~~~E 211 (250)
T d1yb2a1 196 VLSLSASGMHHLETVE 211 (250)
T ss_dssp HHHSGGGTEEEEEEEE
T ss_pred HHHHHHCCCceeEEEE
Confidence 54 58998877654
|
| >d2uyoa1 c.66.1.57 (A:14-310) Putative methyltransferase ML2640 {Mycobacterium leprae [TaxId: 1769]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: ML2640-like domain: Putative methyltransferase ML2640 species: Mycobacterium leprae [TaxId: 1769]
Probab=95.44 E-value=0.023 Score=46.68 Aligned_cols=92 Identities=14% Similarity=0.114 Sum_probs=63.5
Q ss_pred cCCCeEEEec-----------CCCCceEEEeechhhhhhhc---------cCCCceEEecCCCCCCCCcceEeccccchh
Q 036440 26 ERLGSLVDVG-----------AFPCVKCTEFDQPHVVANLL---------DTNNLKYLADDFFQSIPPVCMIPLRLGYSH 85 (181)
Q Consensus 26 ~~~~~lvDvG-----------~~P~l~~~~~DlP~Vv~~a~---------~~~ri~~~~gDff~~~P~~d~~~~~~~~~~ 85 (181)
++.+.+|.+| ..++++...+|+|+|++.-. ...+...++.|+-++++.. . ...+|
T Consensus 88 ~g~~qvV~LGaGlDTr~~Rl~~~~~~~~~EvD~p~vi~~K~~~l~~~~~~~~~~~~~v~~Dl~~~~~~~--L-~~~g~-- 162 (297)
T d2uyoa1 88 DGIRQFVILASGLDSRAYRLDWPTGTTVYEIDQPKVLAYKSTTLAEHGVTPTADRREVPIDLRQDWPPA--L-RSAGF-- 162 (297)
T ss_dssp TTCCEEEEETCTTCCHHHHSCCCTTCEEEEEECHHHHHHHHHHHHHTTCCCSSEEEEEECCTTSCHHHH--H-HHTTC--
T ss_pred hCCCeEEEeCcccCChhhhcCCCcCceEEEcCChHHHHHHHHHHHhcCCCCCceEEEecccccchHHHH--H-HhcCC--
Confidence 3567889999 46789999999999987321 2567788888876543221 0 00000
Q ss_pred hhHHhhhhhhhhcCCCccchhhhhhcccccceeeeeeccCChHHHHHHHHHHHHHhccCC
Q 036440 86 IKIMIAFFIRLVVGRGRLHIFSWLNFMKRVINMQIIIHVFGDEESVKILKICREAITSKA 145 (181)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~iLHdw~D~~~~~iL~~~~~a~~~~g 145 (181)
-.--+.+++..-+++..+.++..++|+.+.+..++|+
T Consensus 163 -----------------------d~~~ptl~i~EGvl~YL~~~~~~~ll~~i~~~~~~GS 199 (297)
T d2uyoa1 163 -----------------------DPSARTAWLAEGLLMYLPATAQDGLFTEIGGLSAVGS 199 (297)
T ss_dssp -----------------------CTTSCEEEEECSCGGGSCHHHHHHHHHHHHHTCCTTC
T ss_pred -----------------------CCCCCEEEEEccccccCCHHHHHHHHHHHHHhCCCCC
Confidence 0011235577778889999999999999999988887
|
| >d1p91a_ c.66.1.33 (A:) rRNA methyltransferase RlmA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA methyltransferase RlmA domain: rRNA methyltransferase RlmA species: Escherichia coli [TaxId: 562]
Probab=95.14 E-value=0.022 Score=45.03 Aligned_cols=52 Identities=12% Similarity=0.253 Sum_probs=39.9
Q ss_pred cCCCeEEEec------------CCCCceEEEeec-hhhhhhhcc-CCCceEEecCCCC-CCCC--cceE
Q 036440 26 ERLGSLVDVG------------AFPCVKCTEFDQ-PHVVANLLD-TNNLKYLADDFFQ-SIPP--VCMI 77 (181)
Q Consensus 26 ~~~~~lvDvG------------~~P~l~~~~~Dl-P~Vv~~a~~-~~ri~~~~gDff~-~~P~--~d~~ 77 (181)
.+..+||||| ++|+.+.+.+|+ |..++.+.. .+++++..+|..+ +++. .|++
T Consensus 83 ~~~~~iLDiGcG~G~~~~~l~~~~~~~~~~giD~s~~~~~~a~~~~~~~~~~~~d~~~l~~~~~sfD~v 151 (268)
T d1p91a_ 83 DKATAVLDIGCGEGYYTHAFADALPEITTFGLDVSKVAIKAAAKRYPQVTFCVASSHRLPFSDTSMDAI 151 (268)
T ss_dssp TTCCEEEEETCTTSTTHHHHHHTCTTSEEEEEESCHHHHHHHHHHCTTSEEEECCTTSCSBCTTCEEEE
T ss_pred CCCCEEEEeCCCCcHHHHHHHHHCCCCEEEEecchHhhhhhhhcccccccceeeehhhccCCCCCEEEE
Confidence 3557999999 889999999998 666666653 6799999999876 2333 4666
|
| >d1nw3a_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Catalytic, N-terminal domain of histone methyltransferase Dot1l domain: Catalytic, N-terminal domain of histone methyltransferase Dot1l species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.85 E-value=0.026 Score=46.32 Aligned_cols=89 Identities=13% Similarity=0.110 Sum_probs=62.3
Q ss_pred HHHHHHhhhhhcCCCeEEEec------------CCCCceEEEeech-hhhhhhc---------------cCCCceEEecC
Q 036440 15 SLALKYCKQIFERLGSLVDVG------------AFPCVKCTEFDQP-HVVANLL---------------DTNNLKYLADD 66 (181)
Q Consensus 15 ~~~l~~~~~d~~~~~~lvDvG------------~~P~l~~~~~DlP-~Vv~~a~---------------~~~ri~~~~gD 66 (181)
..+++.. +.+.-.+++|+| .+|+.+++.+|+- ..++.+. ...+|+++.||
T Consensus 141 ~~~~~~~--~l~~~~~vlD~GcG~G~~~~~~a~~~~~~~~~Gid~s~~~~~~a~~~~~~~~~~~~~~g~~~~~i~~~~gd 218 (328)
T d1nw3a_ 141 AQMIDEI--KMTDDDLFVDLGSGVGQVVLQVAAATNCKHHYGVEKADIPAKYAETMDREFRKWMKWYGKKHAEYTLERGD 218 (328)
T ss_dssp HHHHHHS--CCCTTCEEEEETCTTSHHHHHHHHHCCCSEEEEEECSHHHHHHHHHHHHHHHHHHHHHTCCCCCEEEEECC
T ss_pred HHHHHHc--CCCCCCEEEEcCCCCCHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHhhhccccCCceEEEECc
Confidence 4556666 567778999999 6888899999984 4444332 14689999999
Q ss_pred CCCC-----CCCcceEeccccchhhhHHhhhhhhhhcCCCccchhhhhhcccccceeeeeeccCChHHHHHHHHHHHHHh
Q 036440 67 FFQS-----IPPVCMIPLRLGYSHIKIMIAFFIRLVVGRGRLHIFSWLNFMKRVINMQIIIHVFGDEESVKILKICREAI 141 (181)
Q Consensus 67 ff~~-----~P~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~iLHdw~D~~~~~iL~~~~~a~ 141 (181)
|.+. +..+|++ ++...+|. .+-.+.|+++...+
T Consensus 219 ~~~~~~~~~~~~advi---------------------------------------~~~~~~f~---~~~~~~l~e~~r~L 256 (328)
T d1nw3a_ 219 FLSEEWRERIANTSVI---------------------------------------FVNNFAFG---PEVDHQLKERFANM 256 (328)
T ss_dssp TTSHHHHHHHHHCSEE---------------------------------------EECCTTTC---HHHHHHHHHHHTTC
T ss_pred ccccccccccCcceEE---------------------------------------EEcceecc---hHHHHHHHHHHHhC
Confidence 9863 1225666 55555542 44467788999999
Q ss_pred ccCCcc
Q 036440 142 TSKAKL 147 (181)
Q Consensus 142 ~~~g~e 147 (181)
+|||+-
T Consensus 257 KpGg~i 262 (328)
T d1nw3a_ 257 KEGGRI 262 (328)
T ss_dssp CTTCEE
T ss_pred CCCcEE
Confidence 999944
|
| >d2fcaa1 c.66.1.53 (A:10-213) tRNA (guanine-N(7)-)-methyltransferase TrmB {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: TrmB-like domain: tRNA (guanine-N(7)-)-methyltransferase TrmB species: Bacillus subtilis [TaxId: 1423]
Probab=93.24 E-value=0.21 Score=38.27 Aligned_cols=99 Identities=16% Similarity=0.166 Sum_probs=64.6
Q ss_pred CeEEEec------------CCCCceEEEeec-hhhhhhhc------cCCCceEEecCCCC---CCCC--cceEeccccch
Q 036440 29 GSLVDVG------------AFPCVKCTEFDQ-PHVVANLL------DTNNLKYLADDFFQ---SIPP--VCMIPLRLGYS 84 (181)
Q Consensus 29 ~~lvDvG------------~~P~l~~~~~Dl-P~Vv~~a~------~~~ri~~~~gDff~---~~P~--~d~~~~~~~~~ 84 (181)
..+|||| .+|+...+.+|. +..+..+. .-+++.++.+|..+ .+|. .|.+
T Consensus 31 PlvLeIGcG~G~~~~~lA~~~p~~~~iGiD~~~~~i~~a~~~~~~~~l~Nv~~~~~Da~~l~~~~~~~~~d~v------- 103 (204)
T d2fcaa1 31 PIHIEVGTGKGQFISGMAKQNPDINYIGIELFKSVIVTAVQKVKDSEAQNVKLLNIDADTLTDVFEPGEVKRV------- 103 (204)
T ss_dssp CEEEEECCTTSHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHSCCSSEEEECCCGGGHHHHCCTTSCCEE-------
T ss_pred ceEEEEEecCcHHHHHHHHhCCCCcEEEeecchHHHHHHHHHHHHHhccCchhcccchhhhhcccCchhhhcc-------
Confidence 5789999 899999999997 66555442 24689999999753 2444 3444
Q ss_pred hhhHHhhhhhhhhcCCCccchhhhhhcccccceeeeeeccCChHH-------HHHHHHHHHHHhccCCcc--CC-----H
Q 036440 85 HIKIMIAFFIRLVVGRGRLHIFSWLNFMKRVINMQIIIHVFGDEE-------SVKILKICREAITSKAKL--ST-----E 150 (181)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~iLHdw~D~~-------~~~iL~~~~~a~~~~g~e--Rt-----~ 150 (181)
++-.... |.... ....|+.++..|+|||.. +| .
T Consensus 104 --------------------------------~i~fp~P-~~k~~h~k~Rl~~~~~l~~~~r~LkpgG~l~i~TD~~~y~ 150 (204)
T d2fcaa1 104 --------------------------------YLNFSDP-WPKKRHEKRRLTYSHFLKKYEEVMGKGGSIHFKTDNRGLF 150 (204)
T ss_dssp --------------------------------EEESCCC-CCSGGGGGGSTTSHHHHHHHHHHHTTSCEEEEEESCHHHH
T ss_pred --------------------------------ccccccc-cchhhhcchhhhHHHHHHHHHHhCCCCcEEEEEECChHHH
Confidence 3332222 22222 247899999999999922 22 3
Q ss_pred HHHHHHHHhCCCeEEEE
Q 036440 151 KELESLFVEVHFHHYKI 167 (181)
Q Consensus 151 ~E~~~Ll~~aGf~~~~i 167 (181)
++..+.+.+.|+....+
T Consensus 151 ~~~~~~~~~~~~~~~~~ 167 (204)
T d2fcaa1 151 EYSLKSFSEYGLLLTYV 167 (204)
T ss_dssp HHHHHHHHHHTCEEEEE
T ss_pred HHHHHHHHHCCCccccC
Confidence 44556777777654433
|
| >d1af7a2 c.66.1.8 (A:92-284) Chemotaxis receptor methyltransferase CheR, C-terminal domain {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Chemotaxis receptor methyltransferase CheR, C-terminal domain domain: Chemotaxis receptor methyltransferase CheR, C-terminal domain species: Salmonella typhimurium [TaxId: 90371]
Probab=93.14 E-value=0.034 Score=42.18 Aligned_cols=29 Identities=10% Similarity=0.132 Sum_probs=28.6
Q ss_pred eeeeeeccCChHHHHHHHHHHHHHhccCC
Q 036440 117 NMQIIIHVFGDEESVKILKICREAITSKA 145 (181)
Q Consensus 117 ~l~~iLHdw~D~~~~~iL~~~~~a~~~~g 145 (181)
+.+++|+.++++...++|++++.+|+|||
T Consensus 137 ~CRNVLiYf~~~~~~~vl~~l~~~L~pGG 165 (193)
T d1af7a2 137 FCRNVMIYFDKTTQEDILRRFVPLLKPDG 165 (193)
T ss_dssp EECSSGGGSCHHHHHHHHHHHGGGEEEEE
T ss_pred EeehhHHhcCHHHHHHHHHHHHHHhCCCc
Confidence 99999999999999999999999999999
|
| >d1i9ga_ c.66.1.13 (A:) Probable methyltransferase Rv2118c {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: tRNA(1-methyladenosine) methyltransferase-like domain: Probable methyltransferase Rv2118c species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=92.79 E-value=0.13 Score=41.38 Aligned_cols=108 Identities=9% Similarity=0.108 Sum_probs=74.9
Q ss_pred HHHHHHhhhhhcCCCeEEEec-------------CCCCceEEEeec-hhhhhhhc---------cCCCceEEecCCCC-C
Q 036440 15 SLALKYCKQIFERLGSLVDVG-------------AFPCVKCTEFDQ-PHVVANLL---------DTNNLKYLADDFFQ-S 70 (181)
Q Consensus 15 ~~~l~~~~~d~~~~~~lvDvG-------------~~P~l~~~~~Dl-P~Vv~~a~---------~~~ri~~~~gDff~-~ 70 (181)
..++... |.+.-.+|||+| -.|.-+.+.+|. |+.++.|. ..+++.++.+|..+ +
T Consensus 86 s~Ii~~l--~i~PG~~VLE~G~GsG~lt~~La~~vgp~G~V~~~d~~~~~~~~Ar~n~~~~~~~~~~nv~~~~~d~~~~~ 163 (264)
T d1i9ga_ 86 AQIVHEG--DIFPGARVLEAGAGSGALTLSLLRAVGPAGQVISYEQRADHAEHARRNVSGCYGQPPDNWRLVVSDLADSE 163 (264)
T ss_dssp HHHHHHT--TCCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHHHTSCCTTEEEECSCGGGCC
T ss_pred HHHHHHh--CCCCCCEEEecCcCCcHHHHHHHHhhCCCcEEEEecCCHHHHHHHHHhhhhhccCCCceEEEEeccccccc
Confidence 4455555 677778999999 479999999997 45555553 25799999999986 3
Q ss_pred CCC--cceEeccccchhhhHHhhhhhhhhcCCCccchhhhhhcccccceeeeeeccCChHHHHHHHHHHHHHhccCC---
Q 036440 71 IPP--VCMIPLRLGYSHIKIMIAFFIRLVVGRGRLHIFSWLNFMKRVINMQIIIHVFGDEESVKILKICREAITSKA--- 145 (181)
Q Consensus 71 ~P~--~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~iLHdw~D~~~~~iL~~~~~a~~~~g--- 145 (181)
+|. .|.+ +| |-+|.. ..+.++..+++|||
T Consensus 164 ~~~~~fDaV---------------------------------------~l-----dlp~P~--~~l~~~~~~LkpGG~lv 197 (264)
T d1i9ga_ 164 LPDGSVDRA---------------------------------------VL-----DMLAPW--EVLDAVSRLLVAGGVLM 197 (264)
T ss_dssp CCTTCEEEE---------------------------------------EE-----ESSCGG--GGHHHHHHHEEEEEEEE
T ss_pred ccCCCcceE---------------------------------------EE-----ecCCHH--HHHHHHHhccCCCCEEE
Confidence 665 5776 33 223332 46889999999999
Q ss_pred -ccCCHHHHHHHH----HhCCCeEEEEEEc
Q 036440 146 -KLSTEKELESLF----VEVHFHHYKITPL 170 (181)
Q Consensus 146 -~eRt~~E~~~Ll----~~aGf~~~~i~~~ 170 (181)
-..+.+|..+.. ++.||...++..+
T Consensus 198 ~~~P~i~Qv~~~~~~l~~~~~f~~i~~~E~ 227 (264)
T d1i9ga_ 198 VYVATVTQLSRIVEALRAKQCWTEPRAWET 227 (264)
T ss_dssp EEESSHHHHHHHHHHHHHHSSBCCCEEECC
T ss_pred EEeCccChHHHHHHHHHHcCCeecceEEEE
Confidence 445665555444 3467988776544
|
| >d2frna1 c.66.1.47 (A:19-278) Hypothetical protein PH0793 {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Met-10+ protein-like domain: Hypothetical protein PH0793 species: Pyrococcus horikoshii [TaxId: 53953]
Probab=92.67 E-value=0.13 Score=41.04 Aligned_cols=57 Identities=12% Similarity=0.010 Sum_probs=40.9
Q ss_pred hcCCCeEEEec-----------CCCCceEEEeec-hhhhhhhc-------cCCCceEEecCCCCCCCC--cceEeccc
Q 036440 25 FERLGSLVDVG-----------AFPCVKCTEFDQ-PHVVANLL-------DTNNLKYLADDFFQSIPP--VCMIPLRL 81 (181)
Q Consensus 25 ~~~~~~lvDvG-----------~~P~l~~~~~Dl-P~Vv~~a~-------~~~ri~~~~gDff~~~P~--~d~~~~~~ 81 (181)
.+.-.+|||+| +.+..+.+..|+ |..++.+. ..++|+++.+|.++-.+. .|.+.|++
T Consensus 105 ~~~g~~VlD~~aG~G~~~l~~a~~~~~~V~avd~n~~a~~~~~~N~~~n~l~~~v~~~~~D~~~~~~~~~~D~Ii~~~ 182 (260)
T d2frna1 105 AKPDELVVDMFAGIGHLSLPIAVYGKAKVIAIEKDPYTFKFLVENIHLNKVEDRMSAYNMDNRDFPGENIADRILMGY 182 (260)
T ss_dssp CCTTCEEEETTCTTTTTHHHHHHHTCCEEEEECCCHHHHHHHHHHHHHTTCTTTEEEECSCTTTCCCCSCEEEEEECC
T ss_pred cCCccEEEECcceEcHHHHHHHHhCCcEEEEecCCHHHHHHHHHHHHHhCCCceEEEEEcchHHhccCCCCCEEEECC
Confidence 45668999999 456668899998 55555442 478999999999875544 68774443
|
| >d1yzha1 c.66.1.53 (A:8-211) tRNA (guanine-N(7)-)-methyltransferase TrmB {Streptococcus pneumoniae [TaxId: 1313]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: TrmB-like domain: tRNA (guanine-N(7)-)-methyltransferase TrmB species: Streptococcus pneumoniae [TaxId: 1313]
Probab=92.43 E-value=0.49 Score=36.09 Aligned_cols=100 Identities=14% Similarity=0.106 Sum_probs=64.6
Q ss_pred CeEEEec------------CCCCceEEEeec-hhhhhhhc------cCCCceEEecCCCC---CCCC--cceEeccccch
Q 036440 29 GSLVDVG------------AFPCVKCTEFDQ-PHVVANLL------DTNNLKYLADDFFQ---SIPP--VCMIPLRLGYS 84 (181)
Q Consensus 29 ~~lvDvG------------~~P~l~~~~~Dl-P~Vv~~a~------~~~ri~~~~gDff~---~~P~--~d~~~~~~~~~ 84 (181)
..+|||| .+|+...+.+|+ +..+..+. .-.+|.++.+|..+ .+|. .|.+
T Consensus 33 plvLdIGcG~G~~~~~lA~~~p~~~~iGid~~~~~v~~a~~~~~~~~l~Ni~~~~~da~~l~~~~~~~~~~~i------- 105 (204)
T d1yzha1 33 PIHVEVGSGKGAFVSGMAKQNPDINYIGIDIQKSVLSYALDKVLEVGVPNIKLLWVDGSDLTDYFEDGEIDRL------- 105 (204)
T ss_dssp CEEEEESCTTSHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHCCSSEEEEECCSSCGGGTSCTTCCSEE-------
T ss_pred CeEEEEeccCCHHHHHHHHHCCCCceEEEeccHHHHHHHHHhhhhhccccceeeecCHHHHhhhccCCceehh-------
Confidence 5699999 899999999997 55555442 24689999999753 3443 2333
Q ss_pred hhhHHhhhhhhhhcCCCccchhhhhhcccccceeeeeeccCChHH-------HHHHHHHHHHHhccCCcc--CC-----H
Q 036440 85 HIKIMIAFFIRLVVGRGRLHIFSWLNFMKRVINMQIIIHVFGDEE-------SVKILKICREAITSKAKL--ST-----E 150 (181)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~iLHdw~D~~-------~~~iL~~~~~a~~~~g~e--Rt-----~ 150 (181)
++ +.-.-|+... ....|+.++..|+|||.. .| .
T Consensus 106 --------------------------------~i-~fPdPw~K~~h~krRl~~~~~l~~~~~~LkpgG~l~i~TD~~~Y~ 152 (204)
T d1yzha1 106 --------------------------------YL-NFSDPWPKKRHEKRRLTYKTFLDTFKRILPENGEIHFKTDNRGLF 152 (204)
T ss_dssp --------------------------------EE-ESCCCCCSGGGGGGSTTSHHHHHHHHHHSCTTCEEEEEESCHHHH
T ss_pred --------------------------------cc-cccccccchhhhhhhhhHHHHHHHHHHhCCCCcEEEEEECCccHH
Confidence 11 1112243332 247899999999999932 23 3
Q ss_pred HHHHHHHHhCCCeEEEEE
Q 036440 151 KELESLFVEVHFHHYKIT 168 (181)
Q Consensus 151 ~E~~~Ll~~aGf~~~~i~ 168 (181)
++..+.+.+.|+.....+
T Consensus 153 ~~~le~~~~~~~~~~~~~ 170 (204)
T d1yzha1 153 EYSLVSFSQYGMKLNGVW 170 (204)
T ss_dssp HHHHHHHHHHTCEEEEEE
T ss_pred HHHHHHHHHCCccccccc
Confidence 344566777788766554
|
| >d1g8aa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Fibrillarin homologue domain: Fibrillarin homologue species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=92.19 E-value=0.44 Score=37.07 Aligned_cols=110 Identities=15% Similarity=0.090 Sum_probs=67.3
Q ss_pred cCCCeEEEec-------------CCCCceEEEeec-hhhhhhhc----cCCCceEEecCCCCC--CC----CcceEeccc
Q 036440 26 ERLGSLVDVG-------------AFPCVKCTEFDQ-PHVVANLL----DTNNLKYLADDFFQS--IP----PVCMIPLRL 81 (181)
Q Consensus 26 ~~~~~lvDvG-------------~~P~l~~~~~Dl-P~Vv~~a~----~~~ri~~~~gDff~~--~P----~~d~~~~~~ 81 (181)
+.-.+|+|+| --|.-+.+.+|+ |..++.+. ..+++..+.+|.-.. .+ ..|.+
T Consensus 72 ~pG~~VLDlGaGsG~~t~~la~~VG~~G~V~aVD~s~~~l~~a~~~a~~~~~~~~i~~d~~~~~~~~~~~~~vD~i---- 147 (227)
T d1g8aa_ 72 KPGKSVLYLGIASGTTASHVSDIVGWEGKIFGIEFSPRVLRELVPIVEERRNIVPILGDATKPEEYRALVPKVDVI---- 147 (227)
T ss_dssp CTTCEEEEETTTSTTHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHSSCTTEEEEECCTTCGGGGTTTCCCEEEE----
T ss_pred CCCCEEEEeccCCCHHHHHHHHHhCCCCEEEEEeCcHHHHHHHHHHHHhcCCceEEEEECCCcccccccccceEEE----
Confidence 3446999999 237778899997 45555443 345666666665421 11 12333
Q ss_pred cchhhhHHhhhhhhhhcCCCccchhhhhhcccccceeeeeeccCC-hHHHHHHHHHHHHHhccCC------c--------
Q 036440 82 GYSHIKIMIAFFIRLVVGRGRLHIFSWLNFMKRVINMQIIIHVFG-DEESVKILKICREAITSKA------K-------- 146 (181)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~iLHdw~-D~~~~~iL~~~~~a~~~~g------~-------- 146 (181)
++|.. .++...++++++..++||| +
T Consensus 148 ----------------------------------------~~d~~~~~~~~~~l~~~~~~LkpgG~lvi~~ka~~~~~~~ 187 (227)
T d1g8aa_ 148 ----------------------------------------FEDVAQPTQAKILIDNAEVYLKRGGYGMIAVKSRSIDVTK 187 (227)
T ss_dssp ----------------------------------------EECCCSTTHHHHHHHHHHHHEEEEEEEEEEEEGGGTCTTS
T ss_pred ----------------------------------------EEEccccchHHHHHHHHHHhcccCCeEEEEEECCccCCCC
Confidence 22322 2345668999999999999 1
Q ss_pred --cCCHHHHHHHHHhCCCeEEEEEEcCCC---CeEEEEE
Q 036440 147 --LSTEKELESLFVEVHFHHYKITPLFGL---PSLIEVY 180 (181)
Q Consensus 147 --eRt~~E~~~Ll~~aGf~~~~i~~~~~~---~~viE~~ 180 (181)
+...++.++++ ++||+..+...+.+. +.+|-++
T Consensus 188 ~~~~v~~~v~~l~-~~gf~iie~i~L~p~~~~H~~vv~r 225 (227)
T d1g8aa_ 188 EPEQVFREVEREL-SEYFEVIERLNLEPYEKDHALFVVR 225 (227)
T ss_dssp CHHHHHHHHHHHH-HTTSEEEEEEECTTTSSSEEEEEEE
T ss_pred CHHHHHHHHHHHH-HcCCEEEEEEcCCCCCCceEEEEEE
Confidence 12234455555 569999988776553 4555444
|
| >d1mjfa_ c.66.1.17 (A:) Putative spermidine synthetase PF0127 (SpeE) {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Putative spermidine synthetase PF0127 (SpeE) species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=92.10 E-value=0.07 Score=42.99 Aligned_cols=52 Identities=13% Similarity=0.100 Sum_probs=38.1
Q ss_pred cCCCeEEEec-----------CCCCceEEEeec-hhhhhhhc----------------cCCCceEEecCCCCCC---CCc
Q 036440 26 ERLGSLVDVG-----------AFPCVKCTEFDQ-PHVVANLL----------------DTNNLKYLADDFFQSI---PPV 74 (181)
Q Consensus 26 ~~~~~lvDvG-----------~~P~l~~~~~Dl-P~Vv~~a~----------------~~~ri~~~~gDff~~~---P~~ 74 (181)
.+.+.++-+| ++|..+.+++|+ |.|++.++ ..+|++++.+|.++-+ ...
T Consensus 71 ~~p~~vLiiG~G~G~~~~~~l~~~~~~v~~VEiD~~Vi~~a~~~f~~~~~~~~~~~~~~d~rv~i~~~Da~~~l~~~~~y 150 (276)
T d1mjfa_ 71 PKPKRVLVIGGGDGGTVREVLQHDVDEVIMVEIDEDVIMVSKDLIKIDNGLLEAMLNGKHEKAKLTIGDGFEFIKNNRGF 150 (276)
T ss_dssp SCCCEEEEEECTTSHHHHHHTTSCCSEEEEEESCHHHHHHHHHHTCTTTTHHHHHHTTCCSSEEEEESCHHHHHHHCCCE
T ss_pred CCCceEEEecCCchHHHHHHHHhCCceEEEecCCHHHHHHHHHhhhhccchhhhhhccCCCCceEEEChHHHHHhccCCC
Confidence 4668899998 888888889998 77877663 2579999999876422 224
Q ss_pred ceE
Q 036440 75 CMI 77 (181)
Q Consensus 75 d~~ 77 (181)
|++
T Consensus 151 DvI 153 (276)
T d1mjfa_ 151 DVI 153 (276)
T ss_dssp EEE
T ss_pred CEE
Confidence 665
|
| >d1dl5a1 c.66.1.7 (A:1-213) Protein-L-isoaspartyl O-methyltransferase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Thermotoga maritima [TaxId: 2336]
Probab=91.03 E-value=0.26 Score=37.56 Aligned_cols=60 Identities=10% Similarity=0.172 Sum_probs=43.6
Q ss_pred HHHHHhhhhhcCCCeEEEec-------------CCCCceEEEeec-hhhhhhhcc------CCCceEEecCCCCCCCC--
Q 036440 16 LALKYCKQIFERLGSLVDVG-------------AFPCVKCTEFDQ-PHVVANLLD------TNNLKYLADDFFQSIPP-- 73 (181)
Q Consensus 16 ~~l~~~~~d~~~~~~lvDvG-------------~~P~l~~~~~Dl-P~Vv~~a~~------~~ri~~~~gDff~~~P~-- 73 (181)
.+++.. +.+.-.+|+||| .-|..+.+.+|. |..++.+.. .+++.++.+|..+.+|.
T Consensus 66 ~~l~~l--~l~~g~~VLdiG~GtG~~s~~la~~~~~~g~V~~id~~~~~~~~a~~~~~~~~~~n~~~~~~d~~~~~~~~~ 143 (213)
T d1dl5a1 66 LFMEWV--GLDKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVERLGIENVIFVCGDGYYGVPEFS 143 (213)
T ss_dssp HHHHHT--TCCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCGGGCCGGGC
T ss_pred HHHHhh--hccccceEEEecCccchhHHHHHHHhCCCCcEEEeecchhhHHHhhhhHhhhcccccccccCchHHcccccc
Confidence 345555 677778999999 236778888886 666665542 57889999999876654
Q ss_pred -cceE
Q 036440 74 -VCMI 77 (181)
Q Consensus 74 -~d~~ 77 (181)
.|.+
T Consensus 144 ~fD~I 148 (213)
T d1dl5a1 144 PYDVI 148 (213)
T ss_dssp CEEEE
T ss_pred chhhh
Confidence 4888
|
| >d1m6ya2 c.66.1.23 (A:2-114,A:216-294) TM0872, methyltransferase domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: MraW-like putative methyltransferases domain: TM0872, methyltransferase domain species: Thermotoga maritima [TaxId: 2336]
Probab=91.00 E-value=0.2 Score=38.25 Aligned_cols=68 Identities=15% Similarity=0.187 Sum_probs=53.3
Q ss_pred HHHHHHhhhhhcCCCeEEEec------------CCCCceEEEeec-hhhhhhhcc-----CCCceEEecCCCC------C
Q 036440 15 SLALKYCKQIFERLGSLVDVG------------AFPCVKCTEFDQ-PHVVANLLD-----TNNLKYLADDFFQ------S 70 (181)
Q Consensus 15 ~~~l~~~~~d~~~~~~lvDvG------------~~P~l~~~~~Dl-P~Vv~~a~~-----~~ri~~~~gDff~------~ 70 (181)
..+++.. +-..-..+||++ ++|+.+.+.+|+ |..++.+.. .+|+.++.+||-+ .
T Consensus 13 ~evi~~l--~~~~~~~~lD~t~G~Gghs~~il~~~~~~~vi~~D~d~~~l~~a~~~l~~~~~r~~~~~~~f~~~~~~~~~ 90 (192)
T d1m6ya2 13 REVIEFL--KPEDEKIILDCTVGEGGHSRAILEHCPGCRIIGIDVDSEVLRIAEEKLKEFSDRVSLFKVSYREADFLLKT 90 (192)
T ss_dssp HHHHHHH--CCCTTCEEEETTCTTSHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHTGGGTTTEEEEECCGGGHHHHHHH
T ss_pred HHHHHhh--CCCCCCEEEEecCCCcHHHHHHHhcCCCCeEEEeechHHHHHHHHHhhccccccccchhHHHhhHHHHHHH
Confidence 5666766 455668999998 789999999998 567776642 6799999999964 3
Q ss_pred CC--CcceEeccccch
Q 036440 71 IP--PVCMIPLRLGYS 84 (181)
Q Consensus 71 ~P--~~d~~~~~~~~~ 84 (181)
.+ ..|.+++++|.|
T Consensus 91 ~~~~~vdgIl~DlGvS 106 (192)
T d1m6ya2 91 LGIEKVDGILMDLGVS 106 (192)
T ss_dssp TTCSCEEEEEEECSCC
T ss_pred cCCCCcceeeeccchh
Confidence 32 369999999986
|
| >d2b25a1 c.66.1.13 (A:6-329) Hypothetical protein FLJ20628 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: tRNA(1-methyladenosine) methyltransferase-like domain: Hypothetical protein FLJ20628 species: Human (Homo sapiens) [TaxId: 9606]
Probab=90.87 E-value=0.48 Score=38.95 Aligned_cols=109 Identities=10% Similarity=0.109 Sum_probs=74.5
Q ss_pred HHHHHHhhhhhcCCCeEEEec-------------CCCCceEEEeec-hhhhhhhc-----------------cCCCceEE
Q 036440 15 SLALKYCKQIFERLGSLVDVG-------------AFPCVKCTEFDQ-PHVVANLL-----------------DTNNLKYL 63 (181)
Q Consensus 15 ~~~l~~~~~d~~~~~~lvDvG-------------~~P~l~~~~~Dl-P~Vv~~a~-----------------~~~ri~~~ 63 (181)
..++... |...-.+|||+| -.|.-+.+.+|. |+.++.|. ..+++++.
T Consensus 88 ~~Il~~l--~i~pG~rVLE~GtGsG~lt~~LAr~vg~~G~V~t~E~~~~~~~~A~~n~~~~~~~~~~~~~~~~~~nv~~~ 165 (324)
T d2b25a1 88 NMILSMM--DINPGDTVLEAGSGSGGMSLFLSKAVGSQGRVISFEVRKDHHDLAKKNYKHWRDSWKLSHVEEWPDNVDFI 165 (324)
T ss_dssp HHHHHHH--TCCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESSHHHHHHHHHHHHHHHHHHTTTCSSCCCCCEEEE
T ss_pred HHHHHHh--CCCCCCEEEEecccccHHHHHHHHHhCCCcEEEEecCCHHHHHHHHHHHHHhhhhhhhhhhhccccceeEE
Confidence 4566666 778888999999 468888999998 44444332 14789999
Q ss_pred ecCCCCC---CCC--cceEeccccchhhhHHhhhhhhhhcCCCccchhhhhhcccccceeeeeeccCChHHHHHHHHHHH
Q 036440 64 ADDFFQS---IPP--VCMIPLRLGYSHIKIMIAFFIRLVVGRGRLHIFSWLNFMKRVINMQIIIHVFGDEESVKILKICR 138 (181)
Q Consensus 64 ~gDff~~---~P~--~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~iLHdw~D~~~~~iL~~~~ 138 (181)
.+|+-+. ++. .|.+ +| |-++.. ..|..+.
T Consensus 166 ~~di~~~~~~~~~~~fD~V---------------------------------------~L-----D~p~P~--~~l~~~~ 199 (324)
T d2b25a1 166 HKDISGATEDIKSLTFDAV---------------------------------------AL-----DMLNPH--VTLPVFY 199 (324)
T ss_dssp ESCTTCCC-------EEEE---------------------------------------EE-----CSSSTT--TTHHHHG
T ss_pred ecchhhcccccCCCCcceE---------------------------------------ee-----cCcCHH--HHHHHHH
Confidence 9987543 333 4666 33 222211 3688999
Q ss_pred HHhccCC----ccCCHHHHHHHHH-----hCCCeEEEEEEcC
Q 036440 139 EAITSKA----KLSTEKELESLFV-----EVHFHHYKITPLF 171 (181)
Q Consensus 139 ~a~~~~g----~eRt~~E~~~Ll~-----~aGf~~~~i~~~~ 171 (181)
.+|+||| -..|.+|..++++ +.||...++..+-
T Consensus 200 ~~LKpGG~lv~~~P~i~Qv~~~~~~l~~~~~~f~~i~~~E~~ 241 (324)
T d2b25a1 200 PHLKHGGVCAVYVVNITQVIELLDGIRTCELALSCEKISEVI 241 (324)
T ss_dssp GGEEEEEEEEEEESSHHHHHHHHHHHHHHTCCEEEEEEECCC
T ss_pred HhccCCCEEEEEeCCHHHHHHHHHHHHHcCCCceeeEEEEEE
Confidence 9999999 5678888888765 3478888877653
|
| >d1nv8a_ c.66.1.30 (A:) N5-glutamine methyltransferase, HemK {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: N5-glutamine methyltransferase, HemK domain: N5-glutamine methyltransferase, HemK species: Thermotoga maritima [TaxId: 2336]
Probab=89.88 E-value=0.22 Score=40.20 Aligned_cols=51 Identities=16% Similarity=0.235 Sum_probs=39.9
Q ss_pred CCCeEEEec-----------CCCCceEEEeec-hhhhhhhc-------cCCCceEEecCCCCCCCC----cceE
Q 036440 27 RLGSLVDVG-----------AFPCVKCTEFDQ-PHVVANLL-------DTNNLKYLADDFFQSIPP----VCMI 77 (181)
Q Consensus 27 ~~~~lvDvG-----------~~P~l~~~~~Dl-P~Vv~~a~-------~~~ri~~~~gDff~~~P~----~d~~ 77 (181)
....++|+| .+|..+++..|. |..++.+. ..+++.+..+|+++..+. .|++
T Consensus 110 ~~~~vld~g~GsG~i~~~la~~~~~~v~a~Dis~~Al~~A~~Na~~~~~~~~~~i~~~~~~~~~~~~~~~fDlI 183 (271)
T d1nv8a_ 110 GIKTVADIGTGSGAIGVSVAKFSDAIVFATDVSSKAVEIARKNAERHGVSDRFFVRKGEFLEPFKEKFASIEMI 183 (271)
T ss_dssp TCCEEEEESCTTSHHHHHHHHHSSCEEEEEESCHHHHHHHHHHHHHTTCTTSEEEEESSTTGGGGGGTTTCCEE
T ss_pred cccEEEEeeeeeehhhhhhhhcccceeeechhhhhHHHHHHHHHHHcCCCceeEEeecccccccccccCcccEE
Confidence 456899999 889999999998 55555443 367999999999987663 4777
|
| >d1u2za_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Catalytic, N-terminal domain of histone methyltransferase Dot1l domain: Catalytic, N-terminal domain of histone methyltransferase Dot1l species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=89.81 E-value=0.35 Score=41.22 Aligned_cols=89 Identities=18% Similarity=0.287 Sum_probs=58.6
Q ss_pred HHHHHHhhhhhcCCCeEEEec------------CCCCceEEEeech-hhhhhhcc---------------CCCceE-Eec
Q 036440 15 SLALKYCKQIFERLGSLVDVG------------AFPCVKCTEFDQP-HVVANLLD---------------TNNLKY-LAD 65 (181)
Q Consensus 15 ~~~l~~~~~d~~~~~~lvDvG------------~~P~l~~~~~DlP-~Vv~~a~~---------------~~ri~~-~~g 65 (181)
..+++.. +...-.++||+| .+|+.+++.+|+- .-++.|.. ...+.+ ..+
T Consensus 206 ~~Il~~l--~Lkpgd~fLDLGCG~G~~vl~aA~~~g~~~v~GIDiS~~~i~~Ak~~~~e~~~~~~~~g~~~~~~~~~~~~ 283 (406)
T d1u2za_ 206 SDVYQQC--QLKKGDTFMDLGSGVGNCVVQAALECGCALSFGCEIMDDASDLTILQYEELKKRCKLYGMRLNNVEFSLKK 283 (406)
T ss_dssp HHHHHHT--TCCTTCEEEEESCTTSHHHHHHHHHHCCSEEEEEECCHHHHHHHHHHHHHHHHHHHHTTBCCCCEEEEESS
T ss_pred HHHHHHh--CCCCCCEEEeCCCCCcHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHHHhhhhhhhccccccceeeeee
Confidence 5566666 677778999999 6888899999985 44444421 123333 456
Q ss_pred CCCCC------CCCcceEeccccchhhhHHhhhhhhhhcCCCccchhhhhhcccccceeeeeeccCChHHHHHHHHHHHH
Q 036440 66 DFFQS------IPPVCMIPLRLGYSHIKIMIAFFIRLVVGRGRLHIFSWLNFMKRVINMQIIIHVFGDEESVKILKICRE 139 (181)
Q Consensus 66 Dff~~------~P~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~iLHdw~D~~~~~iL~~~~~ 139 (181)
+|++. ++.+|++ ++.+.+| +.+-.+.|+++..
T Consensus 284 ~f~~~~~~d~~~~~adVV---------------------------------------~inn~~f---~~~l~~~L~ei~r 321 (406)
T d1u2za_ 284 SFVDNNRVAELIPQCDVI---------------------------------------LVNNFLF---DEDLNKKVEKILQ 321 (406)
T ss_dssp CSTTCHHHHHHGGGCSEE---------------------------------------EECCTTC---CHHHHHHHHHHHT
T ss_pred chhhccccccccccceEE---------------------------------------EEecccC---chHHHHHHHHHHH
Confidence 67642 3335565 4444433 4556788899999
Q ss_pred HhccCCcc
Q 036440 140 AITSKAKL 147 (181)
Q Consensus 140 a~~~~g~e 147 (181)
.|+|||+-
T Consensus 322 ~LKPGGrI 329 (406)
T d1u2za_ 322 TAKVGCKI 329 (406)
T ss_dssp TCCTTCEE
T ss_pred hcCCCcEE
Confidence 99999943
|
| >d2h00a1 c.66.1.54 (A:5-254) Methyltransferase 10 domain containing protein METT10D {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Methyltransferase 10 domain domain: Methyltransferase 10 domain containing protein METT10D species: Human (Homo sapiens) [TaxId: 9606]
Probab=89.61 E-value=1.8 Score=33.69 Aligned_cols=41 Identities=10% Similarity=-0.038 Sum_probs=30.8
Q ss_pred HHHHHHHHHHHhccCC-------ccCCHHHHHHHHHhCCCeEEEEEEc
Q 036440 130 SVKILKICREAITSKA-------KLSTEKELESLFVEVHFHHYKITPL 170 (181)
Q Consensus 130 ~~~iL~~~~~a~~~~g-------~eRt~~E~~~Ll~~aGf~~~~i~~~ 170 (181)
..+|++....-....| +..+.++...+|++.|+..+++++.
T Consensus 187 ~~~ii~es~~~~~~~g~~t~~ig~~~~l~~i~~~L~~~g~~~i~~ie~ 234 (250)
T d2h00a1 187 VKRIIHDSLQLKKRLRWYSCMLGKKCSLAPLKEELRIQGVPKVTYTEF 234 (250)
T ss_dssp HHHHHHHHHHHGGGBSCEEEEESSTTSHHHHHHHHHHTTCSEEEEEEE
T ss_pred HHHHHHHHHHHhhcCcEEEEEecchhhHHHHHHHHHHcCCCeEEEEEe
Confidence 4456655555555555 6678899999999999998888766
|
| >d1oria_ c.66.1.6 (A:) Protein arginine N-methyltransferase 1, PRMT1 {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arginine methyltransferase domain: Protein arginine N-methyltransferase 1, PRMT1 species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=89.39 E-value=0.29 Score=39.17 Aligned_cols=80 Identities=10% Similarity=0.060 Sum_probs=52.9
Q ss_pred CCCeEEEec-----------CCCCceEEEeechhhhhhh-------ccCCCceEEecCCCC-CCCC--cceEeccccchh
Q 036440 27 RLGSLVDVG-----------AFPCVKCTEFDQPHVVANL-------LDTNNLKYLADDFFQ-SIPP--VCMIPLRLGYSH 85 (181)
Q Consensus 27 ~~~~lvDvG-----------~~P~l~~~~~DlP~Vv~~a-------~~~~ri~~~~gDff~-~~P~--~d~~~~~~~~~~ 85 (181)
+-++||||| +.-.-+.+.+|.......+ ...++|+++.+|..+ +.|. .|++
T Consensus 33 ~~~~VLDiGcG~G~ls~~aa~~Ga~~V~avd~s~~~~~a~~~~~~n~~~~~v~~~~~~~~~~~~~~~~~D~i-------- 104 (316)
T d1oria_ 33 KDKVVLDVGSGTGILCMFAAKAGARKVIGIECSSISDYAVKIVKANKLDHVVTIIKGKVEEVELPVEKVDII-------- 104 (316)
T ss_dssp TTCEEEEETCTTSHHHHHHHHTTCSEEEEEECSTTHHHHHHHHHHTTCTTTEEEEESCTTTCCCSSSCEEEE--------
T ss_pred CcCEEEEEecCCcHHHHHHHHhCCCEEEEEcCcHHHhhhhhHHHHhCCccccceEeccHHHcccccceeEEE--------
Confidence 447899999 2222367888986654433 237899999999986 3453 5776
Q ss_pred hhHHhhhhhhhhcCCCccchhhhhhcccccceeeeeeccCC-hHHHHHHHHHHHHHhccCC
Q 036440 86 IKIMIAFFIRLVVGRGRLHIFSWLNFMKRVINMQIIIHVFG-DEESVKILKICREAITSKA 145 (181)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~iLHdw~-D~~~~~iL~~~~~a~~~~g 145 (181)
+...+.|... .+....++..+...++|||
T Consensus 105 -------------------------------vs~~~~~~l~~e~~~~~~l~~~~r~Lkp~G 134 (316)
T d1oria_ 105 -------------------------------ISEWMGYCLFYESMLNTVLHARDKWLAPDG 134 (316)
T ss_dssp -------------------------------EECCCBBTBTBTCCHHHHHHHHHHHEEEEE
T ss_pred -------------------------------eeeeeeeeeccHHHHHHHHHHHHhcCCCCe
Confidence 3333334333 3345578888888999998
|
| >d1uira_ c.66.1.17 (A:) Spermidine synthase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Thermus thermophilus [TaxId: 274]
Probab=88.77 E-value=0.24 Score=40.48 Aligned_cols=52 Identities=17% Similarity=0.112 Sum_probs=38.1
Q ss_pred cCCCeEEEec-----------CCC-CceEEEeec-hhhhhhhc-----------cCCCceEEecCCCCC---CCC-cceE
Q 036440 26 ERLGSLVDVG-----------AFP-CVKCTEFDQ-PHVVANLL-----------DTNNLKYLADDFFQS---IPP-VCMI 77 (181)
Q Consensus 26 ~~~~~lvDvG-----------~~P-~l~~~~~Dl-P~Vv~~a~-----------~~~ri~~~~gDff~~---~P~-~d~~ 77 (181)
...+++|.+| ++| ..+.+++|+ |.|++.+. ..+|++++.+|.++- .+. .|++
T Consensus 76 ~~pk~VLiiG~G~G~~~~~ll~~~~~~~v~~VEiD~~Vi~~a~~~f~~~~~~~~~d~rv~i~~~Da~~~l~~~~~~yDvI 155 (312)
T d1uira_ 76 PEPKRVLIVGGGEGATLREVLKHPTVEKAVMVDIDGELVEVAKRHMPEWHQGAFDDPRAVLVIDDARAYLERTEERYDVV 155 (312)
T ss_dssp SCCCEEEEEECTTSHHHHHHTTSTTCCEEEEEESCHHHHHHHHHHCHHHHTTGGGCTTEEEEESCHHHHHHHCCCCEEEE
T ss_pred CCcceEEEeCCCchHHHHHHHhcCCcceEEEecCCHHHHHHHHhcCcccccCccCCCceEEEEchHHHHhhhcCCcccEE
Confidence 4668999999 665 558899998 67776553 368999999998863 333 5776
|
| >d1g6q1_ c.66.1.6 (1:) Arginine methyltransferase, HMT1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arginine methyltransferase domain: Arginine methyltransferase, HMT1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=87.66 E-value=0.71 Score=36.84 Aligned_cols=51 Identities=16% Similarity=0.222 Sum_probs=36.1
Q ss_pred CCCeEEEec-----------CCCCceEEEeechhhhhhhc-------cCCCceEEecCCCC-CCCC--cceE
Q 036440 27 RLGSLVDVG-----------AFPCVKCTEFDQPHVVANLL-------DTNNLKYLADDFFQ-SIPP--VCMI 77 (181)
Q Consensus 27 ~~~~lvDvG-----------~~P~l~~~~~DlP~Vv~~a~-------~~~ri~~~~gDff~-~~P~--~d~~ 77 (181)
+-.+||||| +...-+.+..|....+..+. ..++++++.+|..+ ++|. .|++
T Consensus 38 ~~~~VLDlGcGtG~ls~~aa~~Ga~~V~avd~s~~~~~a~~~~~~~~~~~~i~~i~~~~~~l~~~~~~~D~i 109 (328)
T d1g6q1_ 38 KDKIVLDVGCGTGILSMFAAKHGAKHVIGVDMSSIIEMAKELVELNGFSDKITLLRGKLEDVHLPFPKVDII 109 (328)
T ss_dssp TTCEEEEETCTTSHHHHHHHHTCCSEEEEEESSTHHHHHHHHHHHTTCTTTEEEEESCTTTSCCSSSCEEEE
T ss_pred CcCEEEEeCCCCCHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHHhCccccceEEEeehhhccCcccceeEE
Confidence 347899999 33334788889876554442 37899999999986 3554 6777
|
| >d1i1na_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=86.13 E-value=0.82 Score=35.08 Aligned_cols=62 Identities=16% Similarity=0.116 Sum_probs=42.9
Q ss_pred HHHHHhhhhhcCCCeEEEec-------------CCCCceEEEeec-hhhhhhhc-----------cCCCceEEecCCCCC
Q 036440 16 LALKYCKQIFERLGSLVDVG-------------AFPCVKCTEFDQ-PHVVANLL-----------DTNNLKYLADDFFQS 70 (181)
Q Consensus 16 ~~l~~~~~d~~~~~~lvDvG-------------~~P~l~~~~~Dl-P~Vv~~a~-----------~~~ri~~~~gDff~~ 70 (181)
.+++....+.+.-.+||||| ..|.-+.+.+|. |..++.+. ..+++++..+|.++.
T Consensus 65 ~~le~L~~~l~~g~~VLdiG~GsGy~ta~la~l~~~~g~V~~ie~~~~l~~~a~~~l~~~~~~~~~~~~~~~~~gD~~~~ 144 (224)
T d1i1na_ 65 YALELLFDQLHEGAKALDVGSGSGILTACFARMVGCTGKVIGIDHIKELVDDSVNNVRKDDPTLLSSGRVQLVVGDGRMG 144 (224)
T ss_dssp HHHHHTTTTSCTTCEEEEETCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHCTHHHHTSSEEEEESCGGGC
T ss_pred HHHHHHhhccCCCCeEEEecCCCCHHHHHHHHHhCCCceEEEEcCCHHHHHHHHHhccccCcccccccceEEEEeecccc
Confidence 34444422455667999999 457778888896 55665542 147899999999876
Q ss_pred CCC---cceE
Q 036440 71 IPP---VCMI 77 (181)
Q Consensus 71 ~P~---~d~~ 77 (181)
.|. .|.+
T Consensus 145 ~~~~~~fD~I 154 (224)
T d1i1na_ 145 YAEEAPYDAI 154 (224)
T ss_dssp CGGGCCEEEE
T ss_pred cchhhhhhhh
Confidence 654 4887
|
| >d1iy9a_ c.66.1.17 (A:) Spermidine synthase {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
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class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Bacillus subtilis [TaxId: 1423]
Probab=85.50 E-value=0.54 Score=37.63 Aligned_cols=52 Identities=23% Similarity=0.201 Sum_probs=37.7
Q ss_pred cCCCeEEEec-----------CCCC-ceEEEeec-hhhhhhhc----------cCCCceEEecCCCC---CCCC-cceE
Q 036440 26 ERLGSLVDVG-----------AFPC-VKCTEFDQ-PHVVANLL----------DTNNLKYLADDFFQ---SIPP-VCMI 77 (181)
Q Consensus 26 ~~~~~lvDvG-----------~~P~-l~~~~~Dl-P~Vv~~a~----------~~~ri~~~~gDff~---~~P~-~d~~ 77 (181)
...+.++-+| +||. .+.+++|+ |.|++.+. ..+|++++.+|.++ ..+. .|++
T Consensus 74 ~~p~~vLiiGgG~G~~~~~~l~~~~~~~i~~VEID~~Vi~~a~~~~~~~~~~~~d~r~~i~~~D~~~~l~~~~~~yDvI 152 (274)
T d1iy9a_ 74 PNPEHVLVVGGGDGGVIREILKHPSVKKATLVDIDGKVIEYSKKFLPSIAGKLDDPRVDVQVDDGFMHIAKSENQYDVI 152 (274)
T ss_dssp SSCCEEEEESCTTCHHHHHHTTCTTCSEEEEEESCHHHHHHHHHHCHHHHTTTTSTTEEEEESCSHHHHHTCCSCEEEE
T ss_pred CCcceEEecCCCCcHHHHHHHhcCCcceEEEecCCHHHHHHHHHhChhhcccccCCCeEEEechHHHHHhhcCCCCCEE
Confidence 4567899998 7765 57888998 67777653 26799999999874 2222 5777
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| >d2o07a1 c.66.1.17 (A:16-300) Spermidine synthase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
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class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Human (Homo sapiens) [TaxId: 9606]
Probab=84.38 E-value=0.71 Score=37.20 Aligned_cols=52 Identities=13% Similarity=0.170 Sum_probs=37.3
Q ss_pred cCCCeEEEec-----------CCC-CceEEEeec-hhhhhhhc----------cCCCceEEecCCCC---CCCC-cceE
Q 036440 26 ERLGSLVDVG-----------AFP-CVKCTEFDQ-PHVVANLL----------DTNNLKYLADDFFQ---SIPP-VCMI 77 (181)
Q Consensus 26 ~~~~~lvDvG-----------~~P-~l~~~~~Dl-P~Vv~~a~----------~~~ri~~~~gDff~---~~P~-~d~~ 77 (181)
...++++=+| +|| ..+.+++|+ |.|++.+. ..+|++++.+|.++ ..+. .|++
T Consensus 77 ~~pk~vLiiGgG~G~~~~~~l~~~~~~~v~~vEiD~~Vv~~a~~~~~~~~~~~~d~rv~i~~~Da~~~l~~~~~~yDvI 155 (285)
T d2o07a1 77 PNPRKVLIIGGGDGGVLREVVKHPSVESVVQCEIDEDVIQVSKKFLPGMAIGYSSSKLTLHVGDGFEFMKQNQDAFDVI 155 (285)
T ss_dssp SSCCEEEEEECTTSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHHHTCSSCEEEE
T ss_pred cCcCeEEEeCCCchHHHHHHHHcCCcceeeeccCCHHHHHHHHhhchhhccccCCCCceEEEccHHHHHhcCCCCCCEE
Confidence 3557888888 776 557888988 77887664 26899999999764 3333 5766
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| >d2b2ca1 c.66.1.17 (A:3-314) Spermidine synthase {Caenorhabditis elegans [TaxId: 6239]} | Back information, alignment and structure |
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class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Caenorhabditis elegans [TaxId: 6239]
Probab=82.30 E-value=0.71 Score=37.97 Aligned_cols=44 Identities=18% Similarity=0.196 Sum_probs=33.9
Q ss_pred cCCCeEEEec-----------CCCCc-eEEEeec-hhhhhhhc----------cCCCceEEecCCCC
Q 036440 26 ERLGSLVDVG-----------AFPCV-KCTEFDQ-PHVVANLL----------DTNNLKYLADDFFQ 69 (181)
Q Consensus 26 ~~~~~lvDvG-----------~~P~l-~~~~~Dl-P~Vv~~a~----------~~~ri~~~~gDff~ 69 (181)
...++|+-+| +||.+ +.+++|+ |.|++.+. ..+|++++.+|.++
T Consensus 105 ~~pk~VLIiGgG~G~~~rellk~~~v~~v~~VEID~~Vv~~a~~~~~~~~~~~~dprv~i~i~Da~~ 171 (312)
T d2b2ca1 105 PDPKRVLIIGGGDGGILREVLKHESVEKVTMCEIDEMVIDVAKKFLPGMSCGFSHPKLDLFCGDGFE 171 (312)
T ss_dssp SSCCEEEEESCTTSHHHHHHTTCTTCCEEEEECSCHHHHHHHHHHCTTTSGGGGCTTEEEECSCHHH
T ss_pred CCCCeEEEeCCCchHHHHHHHHcCCcceEEEEcccHHHHHHHHhhchhhccccCCCCeEEEEchHHH
Confidence 4668899999 77765 7899998 67777664 25799999888775
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| >d2fyta1 c.66.1.6 (A:238-548) Protein arginine N-methyltransferase 3, PRMT3 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
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class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arginine methyltransferase domain: Protein arginine N-methyltransferase 3, PRMT3 species: Human (Homo sapiens) [TaxId: 9606]
Probab=81.48 E-value=2 Score=33.62 Aligned_cols=53 Identities=17% Similarity=0.212 Sum_probs=35.5
Q ss_pred hcCCCeEEEec-----------CCCCceEEEeechhhhhhh-------ccCCCceEEecCCCC-CCCC--cceE
Q 036440 25 FERLGSLVDVG-----------AFPCVKCTEFDQPHVVANL-------LDTNNLKYLADDFFQ-SIPP--VCMI 77 (181)
Q Consensus 25 ~~~~~~lvDvG-----------~~P~l~~~~~DlP~Vv~~a-------~~~~ri~~~~gDff~-~~P~--~d~~ 77 (181)
..+-++||||| +.-.-+.+..|.......+ ...++|+++.+|..+ ..|. .|++
T Consensus 33 ~~~~~~VLDiGcG~G~lsl~aa~~Ga~~V~aid~s~~~~~a~~~~~~~~~~~~i~~~~~~~~~l~~~~~~~D~I 106 (311)
T d2fyta1 33 IFKDKVVLDVGCGTGILSMFAAKAGAKKVLGVDQSEILYQAMDIIRLNKLEDTITLIKGKIEEVHLPVEKVDVI 106 (311)
T ss_dssp GTTTCEEEEETCTTSHHHHHHHHTTCSEEEEEESSTHHHHHHHHHHHTTCTTTEEEEESCTTTSCCSCSCEEEE
T ss_pred cCCcCEEEEECCCCCHHHHHHHHcCCCEEEEEeCHHHHHHHHHHHHHhCCCccceEEEeeHHHhcCccccceEE
Confidence 34557899999 2222478888986543322 237899999999986 3453 6887
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