Citrus Sinensis ID: 036441

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-
Protein Sequence
MSSPSSQLATLRRMSIYEPFHQISMWGDTFHGDASPNTGSSTIVQVDTRLDNQTEYLSHNSVEPSRSDQEANKPSEKTQRRLAQNREAARKSRLRKKAYVQQLESSRLKLAQLEQELDRARRQGIYTGSTSDGSHFGLSGNINPGITAFEMEYSHWVEEQNRQIYELRNALQKHITDIELRILVENGLNHYNNLFRMKADAAKADVLSLISGMWRTSTERFFQWIGGFRPSELLNILMPQLEPLTEQQLIDVCNLRQSSQQAEDALQQGIDKLQQSLVQIITEEQLSSGIYQSQMVAAAEKLEALESFVNQADHLRQQTMQQMYRVLTTRQAARALLALGEYFHRLRALSSLWAAQHLESA
Secondary Structure (PSIPRED)
cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHccccccHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccc
Secondary Structure Prediction (SSPRO)
cccccccEcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccEEcccccccccccccccccccEEEEHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHccHEHHHHcccccHHHHHHHHHccccHHHHHHHHHHHccHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccc
Coil and Loop (DISEMBL)
msspssqlaTLRRMsiyepfhqismwgdtfhgdaspntgsstIVQVDTrldnqteylshnsvepsrsdqeankpseKTQRRLAQNREAARKSRLRKKAYVQQLESSRLKLAQLEQELDRARRqgiytgstsdgshfglsgninpgiTAFEMEYSHWVEEQNRQIYELRNALQKHITDIELRILVENGLNHYNNLFRMKADAAKADVLSLISGMWRTSTERFFQwiggfrpsellnilmpqleplteqqLIDVCNLRQSSQQAEDALQQGIDKLQQSLVQIITEEQLSSGIYQSQMVAAAEKLEALESFVNQADHLRQQTMQQMYRVLTTRQAARALLALGEYFHRLRALSSLWAAQHLESA
Flexible Loop (DISEMBL)
msspssqlATLRRMSIYEPFHQISMWGDTFHGDASPNTGSSTIVQVDTRLDNQTEYlshnsvepsrsdqeankpsektqrRLAQNREAARKSRLRKKAYVQQLESSRLKLAQLEQELDRARRQGIytgstsdgshfglSGNINPGITAFEMEYSHWVEEQNRQIYELRNALQKHITDIELRILVENGLNHYNNLFRMKADAAKADVLSLISGMWRTSTERFFQWIGGFRPSELLNILMPQLEPLTEQQLIDVCNLRQSSQQAEDALQQGIDKLQQSLVQIITEEQLSSGIYQSQMVAAAEKLEALESFVNQADHLRQQTMQQMYRVLTTRQAARALLALGEYFHRLRALSSLWAAQHLESA
Low Complexity Region (SEG)
MSSPSSQLATLRRMSIYEPFHQISMWGDTFHGDASPNTGSSTIVQVDTRLDNQTEYLSHNSVEPSRSDQEANKPSEKTQRRLAQNREAARKSRLRKKAYVQQLESSRLKLAQLEQELDRARRQGIYTGSTSDGSHFGLSGNINPGITAFEMEYSHWVEEQNRQIYELRNALQKHITDIELRILVENGLNHYNNLFRMKADAAKADVLSLISGMWRTSTERFFQWIGGFRPSELLNILMPQLEPLTEQQLIDVCNLRQSSQQAEDALQQGIDKLQQSLVQIITEEQLSSGIYQSQMVAAAEKLEALESFVNQADHLRQQTMQQMYRVlttrqaarallalGEYFHRLRALSSLWAAQHLESA
Disordered region (IsUnstruct)
************RMSIYEPFHQISMWGDTFH*******************************************************************************************************HFGLSGNINPGITAFEMEYSHWVEEQNRQIYELRNALQKHITDIELRILVENGLNHYNNLFRMKADAAKADVLSLISGMWRTSTERFFQWIGGFRPSELLNILMPQLEPLTEQQLIDVCNL*****************LQQSLVQIITEEQLSSGIYQSQMVAAAEKLEALESFVNQADHLRQQTMQQMYRVLTTRQAARALLALGEYFHRLRALSSLWAA******
Disordered Region (DISOPRED)
***************************************************************************************************VQQLESSRLKLAQLEQELDRARRQG******************NPGITAFEMEYSHWVEEQNRQIYELR************RILVENGLNHYNNLFRMKADAAKADVLSLISGMWRTSTERFFQWIGGFRPSELLNILMPQLEPLTEQQLID*********************LQQSLVQ******************AAEKLEALESFVNQADHLRQQTMQQMYRVLTTRQAARALLALGEYFHRLRALSSL**AQ*****
Disordered Region (DISEMBL)
*********TLRRMSIYEPFHQISMWGDTFHGDASPNTGSSTIVQVDTRLDNQTEYLS******************************************QQLESSRLKLAQLEQELDRARRQGIYTGSTSDGSHFGLSGNINPGITAFEMEYSHWVEEQNRQIYELRNALQKHITDIELRILVENGLNHYNNLFRMKADAAKADVLSLISGMWRTSTERFFQWIGGFRPSELLNILMPQLEPLTEQQLIDVCNLRQ*********QQGIDKLQQSLVQIITEEQLSSGIYQSQMVAAAEKLEALESFVNQADHLRQQTMQQMYRVLTTRQAARALLALGEYFHRLRALSSLWAAQHLESA
Disordered Region (DISPRO)
********ATLRRMSIYEPFHQISMWGDT*********************************************SEKTQRRLAQNREAARKSRLRKKAYVQQLESSRLKLAQLEQELDRARRQGIYTGSTSDGSHFGLSGNINPGITAFEMEYSHWVEEQNRQIYELRNALQKHITDIELRILVENGLNHYNNLFRMKADAAKADVLSLISGMWRTSTERFFQWIGGFRPSELLNILMPQLEPLTEQQLIDVCNLRQSSQQAEDALQQGIDKLQQSLVQIITEEQLSSGIYQSQMVAAAEKLEALESFVNQADHLRQQTMQQMYRVLTTRQAARALLALGEYFHRLRALSSLWAA******
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MSSPSSQLATLRRMSIYEPFHQISMWGDTFHGDASPNTGSSTIVQVDTRLDNQTEYLSHNSVEPSRSDQEANKPSEKTQRRLAQNREAARKSRLRxxxxxxxxxxxxxxxxxxxxxxxxxxxxGIYTGSTSDGSHFGLSGNINPGITAFEMEYSHWVEEQNRQIYELRNALQKHITDIELRILVENGLNHYNNLFRMKADAAKADVLSLISGMWRTSTERFFQWIGGFRPSELLNILMPQLEPLTEQQLIDVCNLRQSSQQAEDALQQGIDKLQQSLVQIITEEQLSSGIYQSQMVAAAEKLEALESFVNQADHLRQQTMQQMYRVLTTRQAARALLALGEYFHRLRALSSLWAAQHLESA
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	361	2.2.26 [Sep-21-2011]
Q93ZE2	368	Transcription factor TGA7	yes	no	0.952	0.934	0.639	1e-130
Q39237	368	Transcription factor TGA1	no	no	0.994	0.975	0.622	1e-127
Q39162	364	Transcription factor TGA4	no	no	0.994	0.986	0.602	1e-123
Q39234	384	Transcription factor TGA3	no	no	0.950	0.893	0.623	1e-122
P14232	359	TGACG-sequence-specific D	N/A	no	0.944	0.949	0.592	1e-111
Q41558	476	Transcription factor HBP-	N/A	no	0.925	0.701	0.547	2e-93
P23923	332	Transcription factor HBP-	N/A	no	0.875	0.951	0.553	2e-92
O24160	456	TGACG-sequence-specific D	N/A	no	0.883	0.699	0.555	3e-92
P43273	330	Transcription factor TGA2	no	no	0.811	0.887	0.580	3e-89
Q39140	330	Transcription factor TGA6	no	no	0.883	0.966	0.545	1e-87

>sp|Q93ZE2|TGA7_ARATH Transcription factor TGA7 OS=Arabidopsis thaliana GN=TGA7 PE=1 SV=1

 Score =  464 bits (1195), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 236/369 (63%), Positives = 288/369 (78%), Gaps = 25/369 (6%)

Query: 2   SSPSSQLATLRRMSIYEPFHQISMWGDTFHGDA---SPNTGSSTIVQVDTRLDNQTEYL- 57
           SS  +QLA+LR M IYEPF QI  WG+ F  D    SPNT +S+I+QVD R+D+    + 
Sbjct: 4   SSSPTQLASLRDMGIYEPFQQIVGWGNVFKSDINDHSPNTATSSIIQVDPRIDDHNNNIK 63

Query: 58  -----SHNSVE---PSRSDQEAN--KPSEKTQRRLAQNREAARKSRLRKKAYVQQLESSR 107
                SHN +E   PS +D + +  +  +K +RRLAQNREAARKSRLRKKAYVQQLE SR
Sbjct: 64  INYDSSHNQIEAEQPSSNDNQDDDGRIHDKMKRRLAQNREAARKSRLRKKAYVQQLEESR 123

Query: 108 LKLAQLEQELDRARRQGIYTGSTSDGSHFGLSGNINPGITAFEMEYSHWVEEQNRQIYEL 167
           LKL+QLEQEL++ ++QG          H G SG+IN GI +FEMEYSHW++EQ+R++ EL
Sbjct: 124 LKLSQLEQELEKVKQQG----------HLGPSGSINTGIASFEMEYSHWLQEQSRRVSEL 173

Query: 168 RNALQKHITDIELRILVENGLNHYNNLFRMKADAAKADVLSLISGMWRTSTERFFQWIGG 227
           R ALQ HI+DIEL++LVE+ LNHY NLF+MK+DAAKADV  LISGMWRTSTERFFQWIGG
Sbjct: 174 RTALQSHISDIELKMLVESCLNHYANLFQMKSDAAKADVFYLISGMWRTSTERFFQWIGG 233

Query: 228 FRPSELLNILMPQLEPLTEQQLIDVCNLRQSSQQAEDALQQGIDKLQQSLVQ-IITEEQL 286
           FRPSELLN++MP L+PLT+QQ+++V NL+QSSQQAEDAL QGIDKLQQSL + I+ +  +
Sbjct: 234 FRPSELLNVVMPYLQPLTDQQILEVRNLQQSSQQAEDALSQGIDKLQQSLAESIVIDAVI 293

Query: 287 SSGIYQSQMVAAAEKLEALESFVNQADHLRQQTMQQMYRVLTTRQAARALLALGEYFHRL 346
            S  Y + M AA E L+ALE FVNQADHLRQQT+QQM ++LTTRQ+AR LLALGEY HRL
Sbjct: 294 ESTHYPTHMAAAIENLQALEGFVNQADHLRQQTLQQMAKILTTRQSARGLLALGEYLHRL 353

Query: 347 RALSSLWAA 355
           RALSSLWAA
Sbjct: 354 RALSSLWAA 362

Transcriptional activator that binds specifically to the DNA sequence 5'-TGACG-3'. Recognizes ocs elements like the as-1 motif of the cauliflower mosaic virus 35S promoter. Binding to the as-1-like cis elements mediate auxin- and salicylic acid-inducible transcription. May be involved in the induction of the systemic acquired resistance (SAR) via its interaction with NPR1.
Arabidopsis thaliana (taxid: 3702)

>sp|Q39237|TGA1_ARATH Transcription factor TGA1 OS=Arabidopsis thaliana GN=TGA1 PE=1 SV=2

 Score =  454 bits (1167), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 228/366 (62%), Positives = 271/366 (74%), Gaps = 7/366 (1%)

Query: 1   MSSPSSQLATLRRMSIYEPFHQISMWGDTFHGDASP---NTGSSTIVQVDTRLDNQ-TEY 56
           M+S S+     RR+ IYEP HQ  MWG++F  + S    NT +  I+  + +LDN  +E 
Sbjct: 1   MNSTSTHFVPPRRVGIYEPVHQFGMWGESFKSNISNGTMNTPNHIIIPNNQKLDNNVSED 60

Query: 57  LSHNSV-EPSRSDQEAN--KPSEKTQRRLAQNREAARKSRLRKKAYVQQLESSRLKLAQL 113
            SH +   P   DQEA+  +  +K QRRLAQNREAARKSRLRKKAYVQQLE+SRLKL QL
Sbjct: 61  TSHGTAGTPHMFDQEASTSRHPDKIQRRLAQNREAARKSRLRKKAYVQQLETSRLKLIQL 120

Query: 114 EQELDRARRQGIYTGSTSDGSHFGLSGNINPGITAFEMEYSHWVEEQNRQIYELRNALQK 173
           EQELDRAR+QG Y G+  D +  G S  +NPGI AFEMEY HWVEEQNRQI ELR  L  
Sbjct: 121 EQELDRARQQGFYVGNGIDTNSLGFSETMNPGIAAFEMEYGHWVEEQNRQICELRTVLHG 180

Query: 174 HITDIELRILVENGLNHYNNLFRMKADAAKADVLSLISGMWRTSTERFFQWIGGFRPSEL 233
           HI DIELR LVEN + HY  LFRMK+ AAKADV  ++SGMWRTS ERFF WIGGFRPS+L
Sbjct: 181 HINDIELRSLVENAMKHYFELFRMKSSAAKADVFFVMSGMWRTSAERFFLWIGGFRPSDL 240

Query: 234 LNILMPQLEPLTEQQLIDVCNLRQSSQQAEDALQQGIDKLQQSLVQIITEEQLSSGIYQS 293
           L +L+P  + LT+QQL+DVCNL+QS QQAEDAL QG++KLQ +L   +   QL  G Y  
Sbjct: 241 LKVLLPHFDVLTDQQLLDVCNLKQSCQQAEDALTQGMEKLQHTLADCVAAGQLGEGSYIP 300

Query: 294 QMVAAAEKLEALESFVNQADHLRQQTMQQMYRVLTTRQAARALLALGEYFHRLRALSSLW 353
           Q+ +A ++LEAL SFVNQADHLR +T+QQMYR+LTTRQAAR LLALGEYF RLRALSS W
Sbjct: 301 QVNSAMDRLEALVSFVNQADHLRHETLQQMYRILTTRQAARGLLALGEYFQRLRALSSSW 360

Query: 354 AAQHLE 359
           A +H E
Sbjct: 361 ATRHRE 366

Transcriptional activator that binds specifically to the DNA sequence 5'-TGACG-3'. Recognizes ocs elements like the as-1 motif of the cauliflower mosaic virus 35S promoter. Binding to the as-1-like cis elements mediate auxin- and salicylic acid-inducible transcription. May be involved in the induction of the systemic acquired resistance (SAR) via its interaction with NPR1. Could also bind to the Hex-motif (5'-TGACGTGG-3') another cis-acting element found in plant histone promoters.

Arabidopsis thaliana (taxid: 3702)

>sp|Q39162|TGA4_ARATH Transcription factor TGA4 OS=Arabidopsis thaliana GN=TGA4 PE=1 SV=2

 Score =  442 bits (1137), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 218/362 (60%), Positives = 266/362 (73%), Gaps = 3/362 (0%)

Query: 1   MSSPSSQLATLRRMSIYEPFHQISMWGDTFHGDASPNTGSSTIVQVDTRLDNQTEYLSHN 60
           M++ S+     RR  +YEP +QI MW ++F  +    T  S I+  + + D+ +E  SH 
Sbjct: 1   MNTTSTHFVPPRRFEVYEPLNQIGMWEESFKNNGDMYTPGSIIIPTNEKPDSLSEDTSHG 60

Query: 61  S-VEPSRSDQEAN--KPSEKTQRRLAQNREAARKSRLRKKAYVQQLESSRLKLAQLEQEL 117
           +   P + DQEA+  +  +K QRRLAQNREAARKSRLRKKAYVQQLE+SRLKL  LEQEL
Sbjct: 61  TEGTPHKFDQEASTSRHPDKIQRRLAQNREAARKSRLRKKAYVQQLETSRLKLIHLEQEL 120

Query: 118 DRARRQGIYTGSTSDGSHFGLSGNINPGITAFEMEYSHWVEEQNRQIYELRNALQKHITD 177
           DRAR+QG Y G+  D +    S N++ GI AFEMEY HWVEEQNRQI ELR  L   ++D
Sbjct: 121 DRARQQGFYVGNGVDTNALSFSDNMSSGIVAFEMEYGHWVEEQNRQICELRTVLHGQVSD 180

Query: 178 IELRILVENGLNHYNNLFRMKADAAKADVLSLISGMWRTSTERFFQWIGGFRPSELLNIL 237
           IELR LVEN + HY  LFRMK+ AAK DV  ++SGMW+TS ERFF WIGGFRPSELL +L
Sbjct: 181 IELRSLVENAMKHYFQLFRMKSAAAKIDVFYVMSGMWKTSAERFFLWIGGFRPSELLKVL 240

Query: 238 MPQLEPLTEQQLIDVCNLRQSSQQAEDALQQGIDKLQQSLVQIITEEQLSSGIYQSQMVA 297
           +P  +PLT+QQL+DVCNLRQS QQAEDAL QG++KLQ +L + +   +L  G Y  QM  
Sbjct: 241 LPHFDPLTDQQLLDVCNLRQSCQQAEDALSQGMEKLQHTLAESVAAGKLGEGSYIPQMTC 300

Query: 298 AAEKLEALESFVNQADHLRQQTMQQMYRVLTTRQAARALLALGEYFHRLRALSSLWAAQH 357
           A E+LEAL SFVNQADHLR +T+QQM+R+LTTRQAAR LLALGEYF RLRALSS WAA+ 
Sbjct: 301 AMERLEALVSFVNQADHLRHETLQQMHRILTTRQAARGLLALGEYFQRLRALSSSWAARQ 360

Query: 358 LE 359
            E
Sbjct: 361 RE 362

Transcriptional activator that binds specifically to the DNA sequence 5'-TGACG-3'. Recognizes ocs elements like the as-1 motif of the cauliflower mosaic virus 35S promoter. Binding to the as-1-like cis elements mediate auxin- and salicylic acid-inducible transcription. May be involved in the induction of the systemic acquired resistance (SAR) via its interaction with NPR1. Could also bind to the Hex-motif (5'-TGACGTGG-3') another cis-acting element found in plant histone promoters.

Arabidopsis thaliana (taxid: 3702)

>sp|Q39234|TGA3_ARATH Transcription factor TGA3 OS=Arabidopsis thaliana GN=TGA3 PE=1 SV=1

 Score =  437 bits (1125), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 229/367 (62%), Positives = 283/367 (77%), Gaps = 24/367 (6%)

Query: 11  LRRMSIYEPFHQISMWGDTFHGDASPNTGSSTI-------VQVDTRL----DNQTEYLS- 58
            R M +YEPF Q+S W   F  D +  T +          ++VD R     +N+  Y S 
Sbjct: 16  FRDMGMYEPFQQLSGWESPFKSDINNITSNQNNNQSSSTTLEVDARPEADDNNRVNYTSV 75

Query: 59  -HNSVEP---SRSDQEANKPSEKTQRRLAQNREAARKSRLRKKAYVQQLESSRLKLAQLE 114
            +NS+E    S +DQ+ ++ ++K +RRLAQNREAARKSRLRKKA+VQQLE SRLKL+QLE
Sbjct: 76  YNNSLEAEPSSNNDQDEDRINDKMKRRLAQNREAARKSRLRKKAHVQQLEESRLKLSQLE 135

Query: 115 QELDRARRQGIYTGSTSDGSHFGLSGNINPGITAFEMEYSHWVEEQNRQIYELRNALQKH 174
           QEL RAR+QG+   ++SD S+ G +GN+N GI AFEMEY+HW+EEQNR++ E+R ALQ H
Sbjct: 136 QELVRARQQGLCVRNSSDTSYLGPAGNMNSGIAAFEMEYTHWLEEQNRRVSEIRTALQAH 195

Query: 175 ITDIELRILVENGLNHYNNLFRMKADAAKADVLSLISGMWRTSTERFFQWIGGFRPSELL 234
           I DIEL++LV++ LNHY NLFRMKADAAKADV  L+SGMWRTSTERFFQWIGGFRPSELL
Sbjct: 196 IGDIELKMLVDSCLNHYANLFRMKADAAKADVFFLMSGMWRTSTERFFQWIGGFRPSELL 255

Query: 235 NILMPQLEPLTEQQLIDVCNLRQSSQQAEDALQQGIDKLQQSLV-----QIITEEQLSSG 289
           N++MP +EPLT+QQL++V NL+QSSQQAE+AL QG+DKLQQ LV     QI   E ++ G
Sbjct: 256 NVVMPYVEPLTDQQLLEVRNLQQSSQQAEEALSQGLDKLQQGLVESIAIQIKVVESVNHG 315

Query: 290 IYQSQMVAAAEKLEALESFVNQADHLRQQTMQQMYRVLTTRQAARALLALGEYFHRLRAL 349
              + M +A E L+ALESFVNQADHLRQQT+QQM ++LTTRQAAR LLALGEYFHRLRAL
Sbjct: 316 ---APMASAMENLQALESFVNQADHLRQQTLQQMSKILTTRQAARGLLALGEYFHRLRAL 372

Query: 350 SSLWAAQ 356
           SSLWAA+
Sbjct: 373 SSLWAAR 379

Transcriptional activator that binds specifically to the DNA sequence 5'-TGACG-3'. Recognizes ocs elements like the as-1 motif of the cauliflower mosaic virus 35S promoter. Binding to the as-1-like cis elements mediate auxin- and salicylic acid-inducible transcription. Required to induce the systemic acquired resistance (SAR) via the regulation of pathogenesis-related genes expression. Binding to the as-1 element of PR-1 promoter is salicylic acid-inducible and mediated by NPR1. Could also bind to the Hex-motif (5'-TGACGTGG-3') another cis-acting element found in plant histone promoters.

Arabidopsis thaliana (taxid: 3702)

>sp|P14232|TGA1A_TOBAC TGACG-sequence-specific DNA-binding protein TGA-1A OS=Nicotiana tabacum GN=TGA1A PE=1 SV=1

 Score =  402 bits (1033), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 211/356 (59%), Positives = 249/356 (69%), Gaps = 15/356 (4%)

Query: 14  MSIYEPFHQISMWGDTFHGDASPNTGSSTIVQVDT-----------RLDNQTEYLSHNSV 62
           M I +P HQ+ MW D     + P+T ++ I++VD            RLDN+TE  SH +V
Sbjct: 1   MGICDPIHQLGMWDD--FNSSFPSTSATMILEVDKCLEDQIPIMEKRLDNETEDTSHGTV 58

Query: 63  EPS-RSDQEANKPSEKTQRRLAQNREAARKSRLRKKAYVQQLESSRLKLAQLEQELDRAR 121
             S R + E +KP EK  RRLAQNREAARKSRLRKKAYVQQLE+S+LKL QLEQEL+RAR
Sbjct: 59  GTSNRYEPETSKPVEKVLRRLAQNREAARKSRLRKKAYVQQLENSKLKLIQLEQELERAR 118

Query: 122 RQGIYTGSTSDGSHFGLSGNINPGITAFEMEYSHWVEEQNRQIYELRNALQKHITDIELR 181
           +QG+  G   D S    SG  + G   F+MEY HWVEEQ RQ  +LR AL   I + ELR
Sbjct: 119 KQGMCVGGGVDASQLSYSGTASSGTAVFDMEYGHWVEEQTRQTNDLRIALHSQIGEAELR 178

Query: 182 ILVENGLNHYNNLFRMKADAAKADVLSLISGMWRTSTERFFQWIGGFRPSELLNILMPQL 241
           I+V+  LNHY +LFRMKA AAKADVL ++SGMW+TS ERFF WIGGFRPSELL +L P L
Sbjct: 179 IIVDGYLNHYFDLFRMKATAAKADVLYIMSGMWKTSAERFFMWIGGFRPSELLKVLTPHL 238

Query: 242 EPLTEQQLIDVCNLRQSSQQAEDALQQGIDKLQQSLVQIITEEQLSSGIYQ-SQMVAAAE 300
           E LTEQQL +VCNL QS QQAEDAL QG+ KL Q L + +   +L  G Y   QM  A E
Sbjct: 239 ELLTEQQLREVCNLTQSCQQAEDALSQGMVKLHQILAEAVAAGRLGEGNYTLPQMGPAIE 298

Query: 301 KLEALESFVNQADHLRQQTMQQMYRVLTTRQAARALLALGEYFHRLRALSSLWAAQ 356
           KLE L  FVNQADHLRQ+T+QQM R+L T QAA+ LLALGEYF RLR LSS WA +
Sbjct: 299 KLEDLVRFVNQADHLRQETLQQMSRILNTCQAAQGLLALGEYFERLRVLSSQWATR 354

Transcriptional activator that binds specifically to the DNA sequence 5'-TGACG-3'. Recognizes ocs elements like the as-1 motif of the cauliflower mosaic virus 35S promoter. Binding to the as-1-like cis elements mediate auxin- and salicylic acid-inducible transcription. Could also bind to the Hex-motif (5'-TGACGTGG-3') another cis-acting element found in plant histone promoters.

Nicotiana tabacum (taxid: 4097)

>sp|Q41558|HBP1C_WHEAT Transcription factor HBP-1b(c1) (Fragment) OS=Triticum aestivum PE=1 SV=2

 Score =  342 bits (878), Expect = 2e-93,   Method: Compositional matrix adjust.
 Identities = 191/349 (54%), Positives = 236/349 (67%), Gaps = 15/349 (4%)

Query: 21  HQISMWGDTFHGDASPNTGSSTIVQVDTRLDNQT---EYLSHNSVEPSRSDQEANKPSEK 77
           H    WG++   D SP T +ST   +D    NQ      L+  +   S SD+  +K   K
Sbjct: 133 HNNDNWGESSMADTSPRTDTSTDPDIDIDERNQMFEQGQLAAPTASDS-SDKSRDKLDHK 191

Query: 78  TQRRLAQNREAARKSRLRKKAYVQQLESSRLKLAQLEQELDRARRQGIYTGSTSDGSHFG 137
           + RRLAQNREAARKSRLRKKAY+Q LESSRLKL QLEQEL RAR+QGI+  S+ D S   
Sbjct: 192 SLRRLAQNREAARKSRLRKKAYIQNLESSRLKLTQLEQELQRARQQGIFISSSGDQSQ-S 250

Query: 138 LSGNINPGITAFEMEYSHWVEEQNRQIYELRNALQKHITDIELRILVENGLNHYNNLFRM 197
            SGN   G  AF+MEY+ W+EE N+ I ELR A   H  D +LR +V++ ++ Y+  FR+
Sbjct: 251 ASGN---GAVAFDMEYARWLEEHNKHINELRAAANAHAGDDDLRKIVDSIMSQYDEFFRL 307

Query: 198 KADAAKADVLSLISGMWRTSTERFFQWIGGFRPSELLNILMPQLEPLTEQQLIDVCNLRQ 257
           K  AAKADV  ++SGMW+T  ER F W+GGFR SELL +L  QLEPLTEQQL  +CNL+Q
Sbjct: 308 KGVAAKADVFHVLSGMWKTPAERCFMWLGGFRSSELLKLLAGQLEPLTEQQLTGICNLQQ 367

Query: 258 SSQQAEDALQQGIDKLQQSLVQIITEEQL----SSG---IYQSQMVAAAEKLEALESFVN 310
           SSQQAEDAL QG++ LQQSL + +    L    SSG    Y  QM  A  KL  LE+F+ 
Sbjct: 368 SSQQAEDALSQGMEALQQSLAETLASGSLGPAGSSGNVASYMGQMAMAMGKLGTLENFLR 427

Query: 311 QADHLRQQTMQQMYRVLTTRQAARALLALGEYFHRLRALSSLWAAQHLE 359
           QAD+LR QT+QQM R+LTTRQ+ARALLA+ +YF RLRALSSLW A+  E
Sbjct: 428 QADNLRLQTLQQMQRILTTRQSARALLAISDYFSRLRALSSLWLARPRE 476

Transcriptional activator that binds specifically to the DNA sequence 5'-TGACG-3'. Recognizes ocs elements like the as-1 motif of the cauliflower mosaic virus 35S promoter. Binding to the as-1-like cis elements mediate auxin- and salicylic acid-inducible transcription. Binds to the hexamer motif 5'-ACGTCA-3' of histone gene promoters.

Triticum aestivum (taxid: 4565)

>sp|P23923|HBP1B_WHEAT Transcription factor HBP-1b(c38) OS=Triticum aestivum PE=2 SV=1

 Score =  339 bits (870), Expect = 2e-92,   Method: Compositional matrix adjust.
 Identities = 190/343 (55%), Positives = 237/343 (69%), Gaps = 27/343 (7%)

Query: 32  GDASPNTGSSTIVQVDTRLDNQTEYL------SHNSVEPSRSDQEANKPSE-KTQRRLAQ 84
            +ASP T +ST        D+  E L      +  +V    SD+  +K  + KT RRLAQ
Sbjct: 2   AEASPRTETST--------DDTDENLMLEPGNAALAVVSDSSDRSRDKNGDQKTMRRLAQ 53

Query: 85  NREAARKSRLRKKAYVQQLESSRLKLAQLEQELDRARRQGIYTGSTSDGSHFGLSGNINP 144
           NREAARKSRLRKKAYVQQLE+SRLKL QLEQEL RAR+QGI+  S++D SH  +SGN   
Sbjct: 54  NREAARKSRLRKKAYVQQLENSRLKLTQLEQELQRARQQGIFISSSADQSH-SMSGN--- 109

Query: 145 GITAFEMEYSHWVEEQNRQIYELRNALQKHITDIELRILVENGLNHYNNLFRMKADAAKA 204
           G  AF+ EY+ W+EE NRQ+ ELR A+  H  D ELR +VE  ++HY+ +F+ K +AAKA
Sbjct: 110 GALAFDTEYARWLEEHNRQVNELRAAVNAHAGDTELRSVVEKIMSHYDEIFKQKGNAAKA 169

Query: 205 DVLSLISGMWRTSTERFFQWIGGFRPSELLNILMPQLEPLTEQQLIDVCNLRQSSQQAED 264
           DV  ++SGMW+T  ER F W+GGFRPSELL +L  QLEPLTEQQL  +CNL+QSSQQAED
Sbjct: 170 DVFHVLSGMWKTPAERCFLWLGGFRPSELLKLLSTQLEPLTEQQLSGICNLQQSSQQAED 229

Query: 265 ALQQGIDKLQQSLVQIITEEQLSS--------GIYQSQMVAAAEKLEALESFVNQADHLR 316
           AL QG++ LQQSL + +     SS          Y  QM  A  KL  LE+F++QAD+LR
Sbjct: 230 ALSQGMEALQQSLAETLAGSIGSSGSGSTGNVANYMGQMAMAMGKLGTLENFLSQADNLR 289

Query: 317 QQTMQQMYRVLTTRQAARALLALGEYFHRLRALSSLWAAQHLE 359
           QQT+QQM R+LTTRQ+ARALL + +Y  RLRALSSLW A+  E
Sbjct: 290 QQTLQQMQRILTTRQSARALLVISDYSSRLRALSSLWLARPKE 332

Transcriptional activator that binds specifically to the DNA sequence 5'-TGACG-3'. Recognizes ocs elements like the as-1 motif of the cauliflower mosaic virus 35S promoter. Binding to the as-1-like cis elements mediate auxin- and salicylic acid-inducible transcription. Binds to the hexamer motif 5'-ACGTCA-3' of histone gene promoters.

Triticum aestivum (taxid: 4565)

>sp|O24160|TGA21_TOBAC TGACG-sequence-specific DNA-binding protein TGA-2.1 OS=Nicotiana tabacum GN=TGA21 PE=1 SV=1

 Score =  338 bits (868), Expect = 3e-92,   Method: Compositional matrix adjust.
 Identities = 186/335 (55%), Positives = 232/335 (69%), Gaps = 16/335 (4%)

Query: 37  NTGSSTIVQVDTRLDNQTEYLSHNSVEPSRSDQEANKPSEK-----TQRRLAQNREAARK 91
           N G S +    +R D  T+    +  +   + Q ++K  EK     T RRLAQNREAARK
Sbjct: 123 NWGESNMADSGSRTDTSTDMDGDDKNQLIEAGQSSDKSKEKVLDQKTLRRLAQNREAARK 182

Query: 92  SRLRKKAYVQQLESSRLKLAQLEQELDRARRQGIYTGSTSDGSHFGLSGNINPGITAFEM 151
           SRLRKKAYVQQLE+SRLKL+QLEQ+L RAR+QG Y  + +D S+ G+  N   G  AF+ 
Sbjct: 183 SRLRKKAYVQQLENSRLKLSQLEQDLQRARQQGKYISNIADQSN-GVGAN---GPLAFDA 238

Query: 152 EYSHWVEEQNRQIYELRNALQKHITDIELRILVENGLNHYNNLFRMKADAAKADVLSLIS 211
           EYS W+EE N+ I ELR A+  H +D ELR +V N   H++ +FR+K +AAKADV  ++S
Sbjct: 239 EYSRWLEEHNKHINELRTAVNAHASDPELRSIVNNVTAHFDEVFRVKGNAAKADVFHVLS 298

Query: 212 GMWRTSTERFFQWIGGFRPSELLNILMPQLEPLTEQQLIDVCNLRQSSQQAEDALQQGID 271
           GMW+T  ER F WIGGFRPSELL +L+ QLEPLTEQQL  + NL+QSS QAEDAL QG++
Sbjct: 299 GMWKTPAERCFMWIGGFRPSELLKLLVNQLEPLTEQQLAGIYNLQQSSHQAEDALSQGME 358

Query: 272 KLQQSLVQIITE----EQLSSGI---YQSQMVAAAEKLEALESFVNQADHLRQQTMQQMY 324
            LQQSL + +       + SSG    Y  QM  A  KL  LE F+ QAD+LRQQT+QQM+
Sbjct: 359 ALQQSLAETLANGSPAPEGSSGDVANYMGQMAMAMGKLGTLEGFLRQADNLRQQTLQQMH 418

Query: 325 RVLTTRQAARALLALGEYFHRLRALSSLWAAQHLE 359
           RVLTTRQ+ARALLA+ EYF RLRALSSLW A+  E
Sbjct: 419 RVLTTRQSARALLAINEYFSRLRALSSLWLARPRE 453

Transcriptional activator that binds specifically to the DNA sequence 5'-TGACG-3'. Recognizes ocs elements like the as-1 motif of the cauliflower mosaic virus 35S promoter. Binding to the as-1-like cis elements mediate auxin- and salicylic acid-inducible transcription.

Nicotiana tabacum (taxid: 4097)

>sp|P43273|TGA2_ARATH Transcription factor TGA2 OS=Arabidopsis thaliana GN=TGA2 PE=1 SV=1

 Score =  328 bits (842), Expect = 3e-89,   Method: Compositional matrix adjust.
 Identities = 176/303 (58%), Positives = 218/303 (71%), Gaps = 10/303 (3%)

Query: 60  NSVEPSRSDQEANKPSEKTQRRLAQNREAARKSRLRKKAYVQQLESSRLKLAQLEQELDR 119
           N+     SD+   K  +KT RRLAQNREAARKSRLRKKAYVQQLE+SRLKL QLEQEL R
Sbjct: 29  NTAASDSSDRSKGKMDQKTLRRLAQNREAARKSRLRKKAYVQQLENSRLKLTQLEQELQR 88

Query: 120 ARRQGIYTGSTSDGSHFGLSGNINPGITAFEMEYSHWVEEQNRQIYELRNALQKHITDIE 179
           AR+QG++   T D +H    GN   G  AF+ E+S W+EE+N+Q+ ELR+AL  H  D E
Sbjct: 89  ARQQGVFISGTGDQAH-STGGN---GALAFDAEHSRWLEEKNKQMNELRSALNAHAGDSE 144

Query: 180 LRILVENGLNHYNNLFRMKADAAKADVLSLISGMWRTSTERFFQWIGGFRPSELLNILMP 239
           LRI+V+  + HY  LFR+K++AAK DV  L+SGMW+T  ER F W+GGFR SELL +L  
Sbjct: 145 LRIIVDGVMAHYEELFRIKSNAAKNDVFHLLSGMWKTPAERCFLWLGGFRSSELLKLLAN 204

Query: 240 QLEPLTEQQLIDVCNLRQSSQQAEDALQQGIDKLQQSLVQIITEEQLSS------GIYQS 293
           QLEP+TE+QL+ + NL+Q+SQQAEDAL QG++ LQQSL   ++   L S        Y  
Sbjct: 205 QLEPMTERQLMGINNLQQTSQQAEDALSQGMESLQQSLADTLSSGTLGSSSSGNVASYMG 264

Query: 294 QMVAAAEKLEALESFVNQADHLRQQTMQQMYRVLTTRQAARALLALGEYFHRLRALSSLW 353
           QM  A  KL  LE F+ QAD+LR QT+QQM RVLTTRQ+ARALLA+ +YF RLRALSSLW
Sbjct: 265 QMAMAMGKLGTLEGFIRQADNLRLQTLQQMIRVLTTRQSARALLAIHDYFSRLRALSSLW 324

Query: 354 AAQ 356
            A+
Sbjct: 325 LAR 327

Transcriptional activator that binds specifically to the DNA sequence 5'-TGACG-3'. Recognizes ocs elements like the as-1 motif of the cauliflower mosaic virus 35S promoter. Binding to the as-1-like cis elements mediate auxin- and salicylic acid-inducible transcription. Required to induce the systemic acquired resistance (SAR) via the regulation of pathogenesis-related genes expression. Binding to the as-1 element of PR-1 promoter is salicylic acid-inducible and mediated by NPR1. Could also bind to the C-boxes (5'-ATGACGTCAT-3') with high affinity.

Arabidopsis thaliana (taxid: 3702)

>sp|Q39140|TGA6_ARATH Transcription factor TGA6 OS=Arabidopsis thaliana GN=TGA6 PE=1 SV=2

 Score =  323 bits (828), Expect = 1e-87,   Method: Compositional matrix adjust.
 Identities = 180/330 (54%), Positives = 229/330 (69%), Gaps = 11/330 (3%)

Query: 33  DASPNTGSSTIVQVDTRLDNQTEYLSHNSVEPSRSDQEANKPSEKTQRRLAQNREAARKS 92
           D S  T  ST    D R D  ++    ++     SD+  +K  +KT RRLAQNREAARKS
Sbjct: 3   DTSSRTDVSTDGDTDHR-DLGSDRGHMHAAASDSSDRSKDKLDQKTLRRLAQNREAARKS 61

Query: 93  RLRKKAYVQQLESSRLKLAQLEQELDRARRQGIYTGSTSDGSHFGLSGNINPGITAFEME 152
           RLRKKAYVQQLE+SRLKL QLEQEL RAR+QG++  S+ D +H    GN   G  AF+ E
Sbjct: 62  RLRKKAYVQQLENSRLKLTQLEQELQRARQQGVFISSSGDQAH-STGGN---GALAFDAE 117

Query: 153 YSHWVEEQNRQIYELRNALQKHITDIELRILVENGLNHYNNLFRMKADAAKADVLSLISG 212
           +S W+EE+NRQ+ ELR+AL  H  D ELRI+V+  + HY  LFR+K++AAK DV  L+SG
Sbjct: 118 HSRWLEEKNRQMNELRSALNAHAGDTELRIIVDGVMAHYEELFRIKSNAAKNDVFHLLSG 177

Query: 213 MWRTSTERFFQWIGGFRPSELLNILMPQLEPLTEQQLIDVCNLRQSSQQAEDALQQGIDK 272
           MW+T  ER F W+GGFR SELL +L  QLEP+TE+Q++ + +L+Q+SQQAEDAL QG++ 
Sbjct: 178 MWKTPAERCFLWLGGFRSSELLKLLANQLEPMTERQVMGINSLQQTSQQAEDALSQGMES 237

Query: 273 LQQSLVQIITEEQLSS------GIYQSQMVAAAEKLEALESFVNQADHLRQQTMQQMYRV 326
           LQQSL   ++   L S        Y  QM  A  +L  LE F+ QAD+LR QT+QQM RV
Sbjct: 238 LQQSLADTLSSGTLGSSSSDNVASYMGQMAMAMGQLGTLEGFIRQADNLRLQTLQQMLRV 297

Query: 327 LTTRQAARALLALGEYFHRLRALSSLWAAQ 356
           LTTRQ+ARALLA+ +Y  RLRALSSLW A+
Sbjct: 298 LTTRQSARALLAIHDYSSRLRALSSLWLAR 327

Transcriptional activator that binds specifically to the DNA sequence 5'-TGACG-3'. Recognizes ocs elements like the as-1 motif of the cauliflower mosaic virus 35S promoter. Binding to the as-1-like cis elements mediate auxin- and salicylic acid-inducible transcription. May be involved in the induction of the systemic acquired resistance (SAR) via its interaction with NPR1. Could also bind to the Hex-motif (5'-TGACGTGG-3') another cis-acting element found in plant histone promoters.

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	361
255545584	361	Transcription factor TGA7, putative [Ric	1.0	1.0	0.750	1e-158
224082194	360	predicted protein [Populus trichocarpa]	0.980	0.983	0.766	1e-155
225459415	361	PREDICTED: transcription factor TGA4 [Vi	1.0	1.0	0.720	1e-150
118482580	356	unknown [Populus trichocarpa]	0.983	0.997	0.737	1e-150
224066899	356	predicted protein [Populus trichocarpa]	0.983	0.997	0.732	1e-149
225438607	362	PREDICTED: transcription factor TGA1 [Vi	1.0	0.997	0.668	1e-141
296082477	349	unnamed protein product [Vitis vinifera]	0.963	0.997	0.676	1e-138
147825362	389	hypothetical protein VITISV_012435 [Viti	1.0	0.928	0.624	1e-136
363807762	362	uncharacterized protein LOC100793353 [Gl	1.0	0.997	0.635	1e-131
15148922	362	TGA-type basic leucine zipper protein TG	1.0	0.997	0.640	1e-131

>gi|255545584|ref|XP_002513852.1| Transcription factor TGA7, putative [Ricinus communis] gi|223546938|gb|EEF48435.1| Transcription factor TGA7, putative [Ricinus communis]

 Score =  563 bits (1452), Expect = e-158,   Method: Compositional matrix adjust.
 Identities = 271/361 (75%), Positives = 308/361 (85%)

Query: 1   MSSPSSQLATLRRMSIYEPFHQISMWGDTFHGDASPNTGSSTIVQVDTRLDNQTEYLSHN 60
           M+S S+QL+ LR M IYEPFHQIS WGDTF GD S N GSSTIV VDT ++++TEY+S +
Sbjct: 1   MTSSSTQLSALRGMGIYEPFHQISSWGDTFRGDGSLNVGSSTIVPVDTGINDKTEYVSQD 60

Query: 61  SVEPSRSDQEANKPSEKTQRRLAQNREAARKSRLRKKAYVQQLESSRLKLAQLEQELDRA 120
           S+E SRSDQE+N+P++K QRRLAQNREAARKSRLRKKAYVQQLESSRLKL QLEQELDRA
Sbjct: 61  SMEHSRSDQESNRPTDKIQRRLAQNREAARKSRLRKKAYVQQLESSRLKLVQLEQELDRA 120

Query: 121 RRQGIYTGSTSDGSHFGLSGNINPGITAFEMEYSHWVEEQNRQIYELRNALQKHITDIEL 180
           R+QGIY  +T+   H GL G +N GIT FEMEY+HW+EE+++ + ELR ALQ HITDIEL
Sbjct: 121 RQQGIYISTTAVSGHLGLPGTLNSGITTFEMEYAHWLEEEHKYVSELRTALQAHITDIEL 180

Query: 181 RILVENGLNHYNNLFRMKADAAKADVLSLISGMWRTSTERFFQWIGGFRPSELLNILMPQ 240
           RILVENGLNHYNNLFRMKADAAKADV  LISG WRTS ERFFQWIGGFRPSELLN+LM Q
Sbjct: 181 RILVENGLNHYNNLFRMKADAAKADVFYLISGKWRTSVERFFQWIGGFRPSELLNVLMSQ 240

Query: 241 LEPLTEQQLIDVCNLRQSSQQAEDALQQGIDKLQQSLVQIITEEQLSSGIYQSQMVAAAE 300
           LEPLT+QQL+DVCNLRQS QQAEDAL QGIDKLQQ+L Q I E+  ++G Y++QM AA  
Sbjct: 241 LEPLTDQQLVDVCNLRQSCQQAEDALSQGIDKLQQTLAQSIAEDIANAGSYRAQMAAAIG 300

Query: 301 KLEALESFVNQADHLRQQTMQQMYRVLTTRQAARALLALGEYFHRLRALSSLWAAQHLES 360
            LEALE FVNQADHLRQQT+Q + R+LTTRQAAR LLALGEYFHRLRALSSLWAA+  E 
Sbjct: 301 NLEALEGFVNQADHLRQQTLQHLSRILTTRQAARGLLALGEYFHRLRALSSLWAARPREP 360

Query: 361 A 361
           A
Sbjct: 361 A 361

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224082194|ref|XP_002306598.1| predicted protein [Populus trichocarpa] gi|222856047|gb|EEE93594.1| predicted protein [Populus trichocarpa]

 Score =  554 bits (1427), Expect = e-155,   Method: Compositional matrix adjust.
 Identities = 272/355 (76%), Positives = 297/355 (83%), Gaps = 1/355 (0%)

Query: 1   MSSPSSQLATLRRMSIYEPFHQISMWGDTFHGDASPNTGSSTIVQVDTRLDNQTEYLSHN 60
           MSS S+Q+A LR M IYEPF+QIS W   F  D S N G STIVQVD  LD+++E++SH 
Sbjct: 1   MSSTSTQIAALRGMGIYEPFNQISSWAHAFRDDGSLNIGPSTIVQVDAGLDDKSEHVSHE 60

Query: 61  SVEPSRSDQEANKPSEKTQRRLAQNREAARKSRLRKKAYVQQLESSRLKLAQLEQELDRA 120
           S+EP RSDQEA+KP++K QRRLAQNREAARKSRLRKKAYVQQLESSR+KLAQLEQEL+RA
Sbjct: 61  SMEPYRSDQEAHKPADKIQRRLAQNREAARKSRLRKKAYVQQLESSRMKLAQLEQELERA 120

Query: 121 RRQGIYTGSTSDGSHFGLSGNINPGITAFEMEYSHWVEEQNRQIYELRNALQKHITDIEL 180
           R QG Y GS S+ SH G SG +NPGI AFEMEY HWVEEQ++QI ELR ALQ HITDIEL
Sbjct: 121 RHQGAYLGSASNSSHLGFSGTVNPGIAAFEMEYGHWVEEQHKQISELRKALQAHITDIEL 180

Query: 181 RILVENGLNHYNNLFRMKADAAKADVLSLISGMWRTSTERFFQWIGGFRPSELLNILMPQ 240
           RILVENGLNHYNNLFRMKADAAKADV  LISG WRTS ERFFQWIGGFRPSELLN+LM Q
Sbjct: 181 RILVENGLNHYNNLFRMKADAAKADVFYLISGKWRTSVERFFQWIGGFRPSELLNVLMSQ 240

Query: 241 LEPLTEQQLIDVCNLRQSSQQAEDALQQGIDKLQQSLVQIITEEQLSSGIYQSQMVAAAE 300
           LEPLT+QQL DVCNLRQSSQQAEDAL QGIDKLQQ+L Q I  + +  G Y  QM    E
Sbjct: 241 LEPLTDQQLADVCNLRQSSQQAEDALTQGIDKLQQTLSQSIAVDVMGVGGY-GQMADDME 299

Query: 301 KLEALESFVNQADHLRQQTMQQMYRVLTTRQAARALLALGEYFHRLRALSSLWAA 355
           KLEALE FVNQADHLRQQT+Q M R+LT RQAAR LLALGEYFHRLRALSSLWAA
Sbjct: 300 KLEALEGFVNQADHLRQQTLQHMSRILTMRQAARGLLALGEYFHRLRALSSLWAA 354

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225459415|ref|XP_002285820.1| PREDICTED: transcription factor TGA4 [Vitis vinifera] gi|302141896|emb|CBI19099.3| unnamed protein product [Vitis vinifera]

 Score =  538 bits (1387), Expect = e-150,   Method: Compositional matrix adjust.
 Identities = 260/361 (72%), Positives = 302/361 (83%)

Query: 1   MSSPSSQLATLRRMSIYEPFHQISMWGDTFHGDASPNTGSSTIVQVDTRLDNQTEYLSHN 60
           MSS S+Q AT RR+ ++EP HQISMW DTF GD++P TG+STI+QVDT LDN++E  SH+
Sbjct: 1   MSSSSTQFATSRRIGMHEPLHQISMWRDTFKGDSNPITGASTIMQVDTMLDNKSESTSHD 60

Query: 61  SVEPSRSDQEANKPSEKTQRRLAQNREAARKSRLRKKAYVQQLESSRLKLAQLEQELDRA 120
           S+ PS + Q  ++ ++KTQRRLAQNREAARKSRLRKKAYVQQLE+SRLKL +LEQEL+RA
Sbjct: 61  SLGPSGNSQPEDRTTDKTQRRLAQNREAARKSRLRKKAYVQQLETSRLKLTELEQELERA 120

Query: 121 RRQGIYTGSTSDGSHFGLSGNINPGITAFEMEYSHWVEEQNRQIYELRNALQKHITDIEL 180
           R+QG+Y G + D +  G SG IN GI  FEMEY HWVEEQ+RQ  ELRNALQ H+TDIEL
Sbjct: 121 RQQGLYIGGSLDTTRVGFSGTINSGIATFEMEYGHWVEEQHRQNCELRNALQAHVTDIEL 180

Query: 181 RILVENGLNHYNNLFRMKADAAKADVLSLISGMWRTSTERFFQWIGGFRPSELLNILMPQ 240
           RILVE+ LNHY  LFRMKADAAKADV  L+SGMWRTS ERFF WIGGFRPSELLN+LMP 
Sbjct: 181 RILVESALNHYYELFRMKADAAKADVFYLMSGMWRTSAERFFLWIGGFRPSELLNVLMPH 240

Query: 241 LEPLTEQQLIDVCNLRQSSQQAEDALQQGIDKLQQSLVQIITEEQLSSGIYQSQMVAAAE 300
            EPLT+QQL+DVCNLRQSSQQAEDAL QG+DKLQQ+L Q I  + + +G Y+SQM  A E
Sbjct: 241 FEPLTDQQLLDVCNLRQSSQQAEDALSQGMDKLQQTLAQSIVTDPVGAGNYRSQMAEAVE 300

Query: 301 KLEALESFVNQADHLRQQTMQQMYRVLTTRQAARALLALGEYFHRLRALSSLWAAQHLES 360
           KL+ALESFVNQADHLRQQT++QM  +LTTRQAAR LLALGEYFHRLRALSSLWAA+  E 
Sbjct: 301 KLDALESFVNQADHLRQQTLRQMSHLLTTRQAARGLLALGEYFHRLRALSSLWAARPREP 360

Query: 361 A 361
           A
Sbjct: 361 A 361

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|118482580|gb|ABK93210.1| unknown [Populus trichocarpa]

 Score =  537 bits (1383), Expect = e-150,   Method: Compositional matrix adjust.
 Identities = 267/362 (73%), Positives = 290/362 (80%), Gaps = 7/362 (1%)

Query: 1   MSSPSSQLATLRRMSIYEPFHQISMWGDTFHGDASPNTGSSTIVQVDTRLDNQTEYLSHN 60
           M S S+Q+A +R M  YEPFHQIS WG  +  D S N G STIVQVD  LDN+TE++SH 
Sbjct: 1   MGSTSTQIAAMRGMGFYEPFHQISSWGHAYRDDGSLNIGPSTIVQVDAGLDNKTEHVSHE 60

Query: 61  SVEPSRSDQEANKPSEKTQRRLAQNREAARKSRLRKKAYVQQLESSRLKLAQLEQELDRA 120
           S+EPSRSDQEA+KP++K QRRLAQNREAARKSRLRKKAYVQQLESSRLKLAQLEQEL+RA
Sbjct: 61  SMEPSRSDQEAHKPADKIQRRLAQNREAARKSRLRKKAYVQQLESSRLKLAQLEQELERA 120

Query: 121 RRQGIYTG-STSDGSHFGLSGNINPGITAFEMEYSHWVEEQNRQIYELRNALQKHITDIE 179
           R QG Y G S SD SH G SG  NPGI AFEMEY HWVEEQ +QI ELRNALQ  ITDIE
Sbjct: 121 RHQGAYIGGSASDSSHLGFSGTGNPGIAAFEMEYGHWVEEQLKQISELRNALQARITDIE 180

Query: 180 LRILVENGLNHYNNLFRMKADAAKADVLSLISGMWRTSTERFFQWIGGFRPSELLNILMP 239
           LRILVENGLNHYNNLFRMK DAAKADV  LISG WRTS ERFF WIGGFRPSELLN+LM 
Sbjct: 181 LRILVENGLNHYNNLFRMKTDAAKADVFYLISGKWRTSVERFFLWIGGFRPSELLNVLMS 240

Query: 240 QLEPLTEQQLIDVCNLRQSSQQAEDALQQGIDKLQQSLVQIITEEQLSSGIYQSQMVAAA 299
           QLEPLT+QQL DVCNLRQSSQQAEDAL QGIDKLQQ+L Q I  + +  G Y  +M    
Sbjct: 241 QLEPLTDQQLADVCNLRQSSQQAEDALTQGIDKLQQTLSQSIAADVMGDGGYGDKMA--- 297

Query: 300 EKLEALESFVNQADHLRQQTMQQMYRVLTTRQAARALLALGEYFHRLRALSSLWAAQHLE 359
              + LE FVNQADHLRQQT+  M R+LT RQAAR LLALGEYFHRLR LSSLWAA+  E
Sbjct: 298 ---DELEGFVNQADHLRQQTLHHMSRILTIRQAARGLLALGEYFHRLRTLSSLWAARPCE 354

Query: 360 SA 361
            A
Sbjct: 355 PA 356

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224066899|ref|XP_002302269.1| predicted protein [Populus trichocarpa] gi|222843995|gb|EEE81542.1| predicted protein [Populus trichocarpa]

 Score =  533 bits (1373), Expect = e-149,   Method: Compositional matrix adjust.
 Identities = 265/362 (73%), Positives = 289/362 (79%), Gaps = 7/362 (1%)

Query: 1   MSSPSSQLATLRRMSIYEPFHQISMWGDTFHGDASPNTGSSTIVQVDTRLDNQTEYLSHN 60
           M S S+Q+A +R M  YEPFHQIS WG  +  D S N G STIVQVD  LDN+TE++S  
Sbjct: 1   MGSTSTQIAAMRGMGFYEPFHQISSWGHAYRDDGSLNIGPSTIVQVDAGLDNKTEHVSQE 60

Query: 61  SVEPSRSDQEANKPSEKTQRRLAQNREAARKSRLRKKAYVQQLESSRLKLAQLEQELDRA 120
           S+EPSRSDQEA+KP++K QRRLAQNREAARKSRLRKKAYVQQLESSRLKLAQLEQEL+RA
Sbjct: 61  SMEPSRSDQEAHKPADKIQRRLAQNREAARKSRLRKKAYVQQLESSRLKLAQLEQELERA 120

Query: 121 RRQGIYTG-STSDGSHFGLSGNINPGITAFEMEYSHWVEEQNRQIYELRNALQKHITDIE 179
           R QG Y G S SD SH G SG  NPGI AFEMEY HWVEEQ +Q+ ELRNALQ  ITDIE
Sbjct: 121 RHQGAYIGGSASDSSHLGFSGTGNPGIAAFEMEYGHWVEEQLKQVSELRNALQARITDIE 180

Query: 180 LRILVENGLNHYNNLFRMKADAAKADVLSLISGMWRTSTERFFQWIGGFRPSELLNILMP 239
           LRILVENGLNHYNNLFRMK DAAKADV  LISG WRTS ERFF WIGGFRPSELLN+LM 
Sbjct: 181 LRILVENGLNHYNNLFRMKTDAAKADVFYLISGKWRTSVERFFLWIGGFRPSELLNVLMS 240

Query: 240 QLEPLTEQQLIDVCNLRQSSQQAEDALQQGIDKLQQSLVQIITEEQLSSGIYQSQMVAAA 299
           QLEPLT+QQL DVCNLRQSSQQAEDAL QGIDKLQQ+L Q I  + +  G Y  +M    
Sbjct: 241 QLEPLTDQQLADVCNLRQSSQQAEDALTQGIDKLQQTLSQSIAADVMGDGGYGDKMA--- 297

Query: 300 EKLEALESFVNQADHLRQQTMQQMYRVLTTRQAARALLALGEYFHRLRALSSLWAAQHLE 359
              + LE FVNQADHLRQQT+  M R+LT RQAAR LLALGEYFHRLR LSSLWAA+  E
Sbjct: 298 ---DELEGFVNQADHLRQQTLHHMSRILTIRQAARGLLALGEYFHRLRTLSSLWAARPCE 354

Query: 360 SA 361
            A
Sbjct: 355 PA 356

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225438607|ref|XP_002280782.1| PREDICTED: transcription factor TGA1 [Vitis vinifera]

 Score =  508 bits (1309), Expect = e-141,   Method: Compositional matrix adjust.
 Identities = 242/362 (66%), Positives = 286/362 (79%), Gaps = 1/362 (0%)

Query: 1   MSSPSSQLATLRRMSIYEPFHQISMWGDTFHGDASPNTGSSTIVQVDTRLDNQTEYLSHN 60
           M+S S+   T RRM IYEP HQIS WG++F  +  PNT +STI +++ +LDNQ+E  SH 
Sbjct: 1   MNSSSTHFVTSRRMGIYEPLHQISTWGESFKTNGCPNTSASTIAELEAKLDNQSEDTSHG 60

Query: 61  SVEPS-RSDQEANKPSEKTQRRLAQNREAARKSRLRKKAYVQQLESSRLKLAQLEQELDR 119
           +  PS + DQEA KP +K QRRLAQNREAARKSRLRKKAYVQ+LESSR+KL QLEQEL+R
Sbjct: 61  TPGPSDKYDQEATKPVDKVQRRLAQNREAARKSRLRKKAYVQELESSRVKLMQLEQELER 120

Query: 120 ARRQGIYTGSTSDGSHFGLSGNINPGITAFEMEYSHWVEEQNRQIYELRNALQKHITDIE 179
           AR+QG+Y G   D  H G SG +N GI AFEMEY HWVEEQ+ QI ELR AL  HI+D+E
Sbjct: 121 ARQQGLYIGGGLDAGHLGFSGAVNSGIAAFEMEYGHWVEEQSSQICELRTALHAHISDVE 180

Query: 180 LRILVENGLNHYNNLFRMKADAAKADVLSLISGMWRTSTERFFQWIGGFRPSELLNILMP 239
           LRILVE  +NHY NLFRMKA+AAKADV  ++SGMW+TS ERFF WIGGFRPSELL +L+P
Sbjct: 181 LRILVETAMNHYFNLFRMKANAAKADVFYMMSGMWKTSAERFFLWIGGFRPSELLKVLVP 240

Query: 240 QLEPLTEQQLIDVCNLRQSSQQAEDALQQGIDKLQQSLVQIITEEQLSSGIYQSQMVAAA 299
           QL+PLT+QQ++DVCNLRQS QQAEDAL QG++KLQQ L + +   QL  G Y  Q+  A 
Sbjct: 241 QLDPLTDQQILDVCNLRQSCQQAEDALTQGMEKLQQILAEAVAAGQLGEGSYIPQLATAL 300

Query: 300 EKLEALESFVNQADHLRQQTMQQMYRVLTTRQAARALLALGEYFHRLRALSSLWAAQHLE 359
           EKLEA+ SFVNQADHLRQ+T+QQM R+LT RQAAR LLALGEYF RLRALSSLWA +  E
Sbjct: 301 EKLEAVVSFVNQADHLRQETLQQMVRILTVRQAARGLLALGEYFQRLRALSSLWATRPRE 360

Query: 360 SA 361
            A
Sbjct: 361 PA 362

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|296082477|emb|CBI21482.3| unnamed protein product [Vitis vinifera]

 Score =  498 bits (1281), Expect = e-138,   Method: Compositional matrix adjust.
 Identities = 236/349 (67%), Positives = 278/349 (79%), Gaps = 1/349 (0%)

Query: 14  MSIYEPFHQISMWGDTFHGDASPNTGSSTIVQVDTRLDNQTEYLSHNSVEPS-RSDQEAN 72
           M IYEP HQIS WG++F  +  PNT +STI +++ +LDNQ+E  SH +  PS + DQEA 
Sbjct: 1   MGIYEPLHQISTWGESFKTNGCPNTSASTIAELEAKLDNQSEDTSHGTPGPSDKYDQEAT 60

Query: 73  KPSEKTQRRLAQNREAARKSRLRKKAYVQQLESSRLKLAQLEQELDRARRQGIYTGSTSD 132
           KP +K QRRLAQNREAARKSRLRKKAYVQ+LESSR+KL QLEQEL+RAR+QG+Y G   D
Sbjct: 61  KPVDKVQRRLAQNREAARKSRLRKKAYVQELESSRVKLMQLEQELERARQQGLYIGGGLD 120

Query: 133 GSHFGLSGNINPGITAFEMEYSHWVEEQNRQIYELRNALQKHITDIELRILVENGLNHYN 192
             H G SG +N GI AFEMEY HWVEEQ+ QI ELR AL  HI+D+ELRILVE  +NHY 
Sbjct: 121 AGHLGFSGAVNSGIAAFEMEYGHWVEEQSSQICELRTALHAHISDVELRILVETAMNHYF 180

Query: 193 NLFRMKADAAKADVLSLISGMWRTSTERFFQWIGGFRPSELLNILMPQLEPLTEQQLIDV 252
           NLFRMKA+AAKADV  ++SGMW+TS ERFF WIGGFRPSELL +L+PQL+PLT+QQ++DV
Sbjct: 181 NLFRMKANAAKADVFYMMSGMWKTSAERFFLWIGGFRPSELLKVLVPQLDPLTDQQILDV 240

Query: 253 CNLRQSSQQAEDALQQGIDKLQQSLVQIITEEQLSSGIYQSQMVAAAEKLEALESFVNQA 312
           CNLRQS QQAEDAL QG++KLQQ L + +   QL  G Y  Q+  A EKLEA+ SFVNQA
Sbjct: 241 CNLRQSCQQAEDALTQGMEKLQQILAEAVAAGQLGEGSYIPQLATALEKLEAVVSFVNQA 300

Query: 313 DHLRQQTMQQMYRVLTTRQAARALLALGEYFHRLRALSSLWAAQHLESA 361
           DHLRQ+T+QQM R+LT RQAAR LLALGEYF RLRALSSLWA +  E A
Sbjct: 301 DHLRQETLQQMVRILTVRQAARGLLALGEYFQRLRALSSLWATRPREPA 349

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147825362|emb|CAN62273.1| hypothetical protein VITISV_012435 [Vitis vinifera]

 Score =  490 bits (1261), Expect = e-136,   Method: Compositional matrix adjust.
 Identities = 243/389 (62%), Positives = 286/389 (73%), Gaps = 28/389 (7%)

Query: 1   MSSPSSQLATLRRMSIYEPFHQISMWGDTFHGDASPNTGSSTIVQVDTRLDNQTEYLSHN 60
           M+S S+   T RRM IYEP HQIS WG++F  +  PNT +STI +++ +LDNQ+E  SH 
Sbjct: 1   MNSSSTHFVTSRRMGIYEPLHQISTWGESFKTNGCPNTSASTIAELEAKLDNQSEDTSHG 60

Query: 61  SVEPS-RSDQEANKPSEKTQRRLAQNREAARKSRLRKKAYVQQLESSRLKLAQLEQELDR 119
           +  PS + DQEA KP +K QRRLAQNREAARKSRLRKKAYVQ+LESSR+KL QLEQEL+R
Sbjct: 61  TPGPSDKYDQEATKPVDKVQRRLAQNREAARKSRLRKKAYVQELESSRVKLMQLEQELER 120

Query: 120 ARRQGIYTGSTSDGSHFGLSGNIN-------PGITAFEMEYSHWVEEQNRQIYELRNALQ 172
           AR+QG+Y G   D  H G SG +N        GI AFEMEY HWVEEQ+ QI ELR AL 
Sbjct: 121 ARQQGLYIGGGLDAGHLGFSGAVNSAHTKNSAGIAAFEMEYGHWVEEQSSQICELRTALH 180

Query: 173 KHITDIELRILVENGLNHYNNLFRMKADAAKADVLSLISGMWRTSTERFFQWIGGFRPSE 232
            HI+D+ELRILVE  +NHY NLFRMKA+AAKADV  ++SGMW+TS ERFF WIGGFRPSE
Sbjct: 181 AHISDVELRILVETAMNHYFNLFRMKANAAKADVFYMMSGMWKTSAERFFLWIGGFRPSE 240

Query: 233 LLNI--------------------LMPQLEPLTEQQLIDVCNLRQSSQQAEDALQQGIDK 272
           LL I                    L+PQL+PLT+QQ++DVCNLRQS QQAEDAL QG++K
Sbjct: 241 LLKIQLVFLDFVFLTEGEGRLGVVLVPQLDPLTDQQILDVCNLRQSCQQAEDALTQGMEK 300

Query: 273 LQQSLVQIITEEQLSSGIYQSQMVAAAEKLEALESFVNQADHLRQQTMQQMYRVLTTRQA 332
           LQQ L + +   QL  G Y  Q+  A EKLEA+ SFVNQADHLRQ+T+QQM R+LT RQA
Sbjct: 301 LQQILAEAVAAGQLGEGSYIPQLATALEKLEAVVSFVNQADHLRQETLQQMVRILTVRQA 360

Query: 333 ARALLALGEYFHRLRALSSLWAAQHLESA 361
           AR LLALGEYF RLRALSSLWA +  E A
Sbjct: 361 ARGLLALGEYFQRLRALSSLWATRPREPA 389

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|363807762|ref|NP_001241919.1| uncharacterized protein LOC100793353 [Glycine max] gi|255645247|gb|ACU23121.1| unknown [Glycine max]

 Score =  474 bits (1219), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 230/362 (63%), Positives = 278/362 (76%), Gaps = 1/362 (0%)

Query: 1   MSSPSSQLATLRRMSIYEPFHQISMWGDTFHGDASPNTGSSTIVQVDTRLDNQTEYLSHN 60
           M+S S Q  + RRMS+Y+P HQISMWG+ F  + + +     I + D + D+Q+E  SH 
Sbjct: 1   MNSASPQFVSSRRMSVYDPIHQISMWGEGFKSNGNLSAAMPLIDETDMKFDSQSEDASHG 60

Query: 61  SV-EPSRSDQEANKPSEKTQRRLAQNREAARKSRLRKKAYVQQLESSRLKLAQLEQELDR 119
            + EP++ DQEANKP++K QRRLAQNREAARKSRLRKKAYVQQLESSRLKL QLEQEL+R
Sbjct: 61  ILGEPNKYDQEANKPTDKIQRRLAQNREAARKSRLRKKAYVQQLESSRLKLMQLEQELER 120

Query: 120 ARRQGIYTGSTSDGSHFGLSGNINPGITAFEMEYSHWVEEQNRQIYELRNALQKHITDIE 179
           AR+QGIY G   D +H G +G++N GIT FEMEY HWV EQNRQI ELRNAL  HI D+E
Sbjct: 121 ARQQGIYIGGGLDSNHLGFAGSVNSGITTFEMEYGHWVNEQNRQITELRNALNAHIGDVE 180

Query: 180 LRILVENGLNHYNNLFRMKADAAKADVLSLISGMWRTSTERFFQWIGGFRPSELLNILMP 239
           LRILV+  ++HY  +FRMK+ AAKADV   +SGMW+T+ ERFF WIGGFRPSELL +L P
Sbjct: 181 LRILVDGMMSHYAEMFRMKSAAAKADVFYAMSGMWKTTAERFFLWIGGFRPSELLKVLGP 240

Query: 240 QLEPLTEQQLIDVCNLRQSSQQAEDALQQGIDKLQQSLVQIITEEQLSSGIYQSQMVAAA 299
            +EPLTEQQ +D+ NL QS QQAEDAL QG+DKL+Q+L   +   Q   G Y  QM +A 
Sbjct: 241 LIEPLTEQQRLDIYNLGQSCQQAEDALSQGMDKLRQTLADSVAAGQYMEGTYIPQMTSAM 300

Query: 300 EKLEALESFVNQADHLRQQTMQQMYRVLTTRQAARALLALGEYFHRLRALSSLWAAQHLE 359
           +KL+AL SFVNQADHLRQ+T+QQM R+LT RQAAR LLALGEYF RLRALSSLW+ +  E
Sbjct: 301 DKLKALVSFVNQADHLRQETLQQMSRILTIRQAARCLLALGEYFQRLRALSSLWSNRPRE 360

Query: 360 SA 361
            A
Sbjct: 361 PA 362

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15148922|gb|AAK84888.1|AF402607_1 TGA-type basic leucine zipper protein TGA1.1 [Phaseolus vulgaris]

 Score =  473 bits (1218), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 232/362 (64%), Positives = 274/362 (75%), Gaps = 1/362 (0%)

Query: 1   MSSPSSQLATLRRMSIYEPFHQISMWGDTFHGDASPNTGSSTIVQVDTRLDNQTEYLSHN 60
           M+S S Q  + RRMS+Y+P HQISMWG+ F  + + +     I   D +LD+Q+E  SH 
Sbjct: 1   MNSASPQFVSARRMSVYDPIHQISMWGEGFKSNGNLSASMPLIDDADMKLDSQSEDASHG 60

Query: 61  SV-EPSRSDQEANKPSEKTQRRLAQNREAARKSRLRKKAYVQQLESSRLKLAQLEQELDR 119
            +  PS+ DQEANKP++K QRRLAQNREAARKSRLRKKAYVQQLESSRLKL QLEQEL+R
Sbjct: 61  ILGAPSKYDQEANKPTDKIQRRLAQNREAARKSRLRKKAYVQQLESSRLKLMQLEQELER 120

Query: 120 ARRQGIYTGSTSDGSHFGLSGNINPGITAFEMEYSHWVEEQNRQIYELRNALQKHITDIE 179
           AR QG+Y G   D +H G SG++N GIT FEMEY HWV EQNRQI ELR AL  HI DIE
Sbjct: 121 ARHQGMYIGGGLDSNHMGFSGSVNSGITTFEMEYGHWVNEQNRQITELRTALNAHIGDIE 180

Query: 180 LRILVENGLNHYNNLFRMKADAAKADVLSLISGMWRTSTERFFQWIGGFRPSELLNILMP 239
           LRILV+  +NHY  +FRMK+ AAKADV  ++SGMW+T+ ERFF WIGGFRPSELL +L P
Sbjct: 181 LRILVDGMMNHYAEIFRMKSAAAKADVFYVMSGMWKTTAERFFLWIGGFRPSELLKVLGP 240

Query: 240 QLEPLTEQQLIDVCNLRQSSQQAEDALQQGIDKLQQSLVQIITEEQLSSGIYQSQMVAAA 299
            +EPLTE+Q +D+ NL QS QQAEDAL QG+DKL+ +L   +   Q   G Y  QM +A 
Sbjct: 241 LIEPLTEKQRLDIYNLGQSCQQAEDALSQGMDKLRHTLADSVAAGQFMEGTYIPQMTSAM 300

Query: 300 EKLEALESFVNQADHLRQQTMQQMYRVLTTRQAARALLALGEYFHRLRALSSLWAAQHLE 359
           EKLEAL SFVNQADHLRQ T+QQM R+LT RQAAR LLALGEYF RLRALSSLW+ +  E
Sbjct: 301 EKLEALVSFVNQADHLRQGTLQQMSRILTIRQAARCLLALGEYFQRLRALSSLWSNRPRE 360

Query: 360 SA 361
            A
Sbjct: 361 PA 362

Source: Phaseolus vulgaris

Species: Phaseolus vulgaris

Genus: Phaseolus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	361
TAIR|locus:2029366	368	TGA7 "AT1G77920" [Arabidopsis	0.966	0.948	0.608	3.8e-110
TAIR|locus:2030551	384	TGA3 "AT1G22070" [Arabidopsis	0.991	0.932	0.593	8.1e-108
TAIR|locus:2171820	368	TGA1 "AT5G65210" [Arabidopsis	0.994	0.975	0.590	1.7e-107
TAIR|locus:2184078	364	TGA4 "AT5G10030" [Arabidopsis	0.994	0.986	0.569	5.3e-104
UNIPROTKB|Q9SQK1	325	TGA2.2 "BZIP transcription fac	0.878	0.975	0.537	1.5e-81
TAIR|locus:2169394	330	AHBP-1B "AT5G06950" [Arabidops	0.891	0.975	0.531	4.7e-80
TAIR|locus:2169409	330	OBF5 "AT5G06960" [Arabidopsis	0.891	0.975	0.528	2e-79
TAIR|locus:2082234	355	TGA6 "AT3G12250" [Arabidopsis	0.819	0.833	0.534	3.1e-76
TAIR|locus:2026890	452	PAN "AT1G68640" [Arabidopsis t	0.905	0.723	0.472	1.2e-74
TAIR|locus:2199968	481	TGA9 "AT1G08320" [Arabidopsis	0.803	0.602	0.5	7.7e-71

TAIR|locus:2029366 TGA7 "AT1G77920" [Arabidopsis thaliana (taxid:3702)]

 Score = 1088 (388.1 bits), Expect = 3.8e-110, P = 3.8e-110
 Identities = 228/375 (60%), Positives = 280/375 (74%)

Query:     1 MSSPS-SQLATLRRMSIYEPFHQISMWGDTFHGDA---SPNTGSSTIVQVDTRLDNQTEY 56
             MSS S +QLA+LR M IYEPF QI  WG+ F  D    SPNT +S+I+QVD R+D+    
Sbjct:     2 MSSSSPTQLASLRDMGIYEPFQQIVGWGNVFKSDINDHSPNTATSSIIQVDPRIDDHNNN 61

Query:    57 L------SHNSVE---PSRSDQEAN--KPSEKTQRRLAQNREAARKSRLRKKAYVQQLES 105
             +      SHN +E   PS +D + +  +  +K +RRLAQNREAARKSRLRKKAYVQQLE 
Sbjct:    62 IKINYDSSHNQIEAEQPSSNDNQDDDGRIHDKMKRRLAQNREAARKSRLRKKAYVQQLEE 121

Query:   106 SRLKLAQLEQELDRARRQGIYTGSTSDGSHFGLSGNINPGITAFEMEYSHWVEEQNRQIY 165
             SRLKL+QLEQEL++ ++QG          H G SG+IN GI +FEMEYSHW++EQ+R++ 
Sbjct:   122 SRLKLSQLEQELEKVKQQG----------HLGPSGSINTGIASFEMEYSHWLQEQSRRVS 171

Query:   166 ELRNALQKHITDIELRILVENGLNHYNNLFRMKADAAKADVLSLISGMWRTSTERFFQWI 225
             ELR ALQ HI+DIEL++LVE+ LNHY NLF+MK+DAAKADV  LISGMWRTSTERFFQWI
Sbjct:   172 ELRTALQSHISDIELKMLVESCLNHYANLFQMKSDAAKADVFYLISGMWRTSTERFFQWI 231

Query:   226 GGFRPSELLNILMPQLEPLTEQQLIDVCNLRQSSQQAEDALQQGIDKLQQSLVQ-IITEE 284
             GGFRPSELLN++MP L+PLT+QQ+++V NL+QSSQQAEDAL QGIDKLQQSL + I+ + 
Sbjct:   232 GGFRPSELLNVVMPYLQPLTDQQILEVRNLQQSSQQAEDALSQGIDKLQQSLAESIVIDA 291

Query:   285 QLSSGIYQSQMVAAAEKLEALESFVNQADHLRQQTMQQMYRVXXXXXXXXXXXXXGEYFH 344
              + S  Y + M AA E L+ALE FVNQADHLRQQT+QQM ++             GEY H
Sbjct:   292 VIESTHYPTHMAAAIENLQALEGFVNQADHLRQQTLQQMAKILTTRQSARGLLALGEYLH 351

Query:   345 RLRALSSLWAAQHLE 359
             RLRALSSLWAA+  E
Sbjct:   352 RLRALSSLWAARPQE 366

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0005516 "calmodulin binding" evidence=ISS

GO:0005515 "protein binding" evidence=IPI

GO:0042742 "defense response to bacterium" evidence=IMP

GO:0009410 "response to xenobiotic stimulus" evidence=RCA

GO:0030968 "endoplasmic reticulum unfolded protein response" evidence=RCA

TAIR|locus:2030551 TGA3 "AT1G22070" [Arabidopsis thaliana (taxid:3702)]

 Score = 1066 (380.3 bits), Expect = 8.1e-108, P = 8.1e-108
 Identities = 223/376 (59%), Positives = 282/376 (75%)

Query:     2 SSPSSQLATLRRMSIYEPFHQISMWGDTFHGDASP-------NTGSSTIVQVDTRLD--- 51
             SS ++Q+ + R M +YEPF Q+S W   F  D +        N  SST ++VD R +   
Sbjct:     7 SSSTTQVVSFRDMGMYEPFQQLSGWESPFKSDINNITSNQNNNQSSSTTLEVDARPEADD 66

Query:    52 -NQTEYLS--HNSVE--PS-RSDQEANKPSEKTQRRLAQNREAARKSRLRKKAYVQQLES 105
              N+  Y S  +NS+E  PS  +DQ+ ++ ++K +RRLAQNREAARKSRLRKKA+VQQLE 
Sbjct:    67 NNRVNYTSVYNNSLEAEPSSNNDQDEDRINDKMKRRLAQNREAARKSRLRKKAHVQQLEE 126

Query:   106 SRLKLAQLEQELDRARRQGIYTGSTSDGSHFGLSGNINPGITAFEMEYSHWVEEQNRQIY 165
             SRLKL+QLEQEL RAR+QG+   ++SD S+ G +GN+N GI AFEMEY+HW+EEQNR++ 
Sbjct:   127 SRLKLSQLEQELVRARQQGLCVRNSSDTSYLGPAGNMNSGIAAFEMEYTHWLEEQNRRVS 186

Query:   166 ELRNALQKHITDIELRILVENGLNHYNNLFRMKADAAKADVLSLISGMWRTSTERFFQWI 225
             E+R ALQ HI DIEL++LV++ LNHY NLFRMKADAAKADV  L+SGMWRTSTERFFQWI
Sbjct:   187 EIRTALQAHIGDIELKMLVDSCLNHYANLFRMKADAAKADVFFLMSGMWRTSTERFFQWI 246

Query:   226 GGFRPSELLNILMPQLEPLTEQQLIDVCNLRQSSQQAEDALQQGIDKLQQSLVQIITEE- 284
             GGFRPSELLN++MP +EPLT+QQL++V NL+QSSQQAE+AL QG+DKLQQ LV+ I  + 
Sbjct:   247 GGFRPSELLNVVMPYVEPLTDQQLLEVRNLQQSSQQAEEALSQGLDKLQQGLVESIAIQI 306

Query:   285 -QLSSGIYQSQMVAAAEKLEALESFVNQADHLRQQTMQQMYRVXXXXXXXXXXXXXGEYF 343
               + S  + + M +A E L+ALESFVNQADHLRQQT+QQM ++             GEYF
Sbjct:   307 KVVESVNHGAPMASAMENLQALESFVNQADHLRQQTLQQMSKILTTRQAARGLLALGEYF 366

Query:   344 HRLRALSSLWAAQHLE 359
             HRLRALSSLWAA+  E
Sbjct:   367 HRLRALSSLWAARPRE 382

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS;IDA

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;RCA

GO:0005515 "protein binding" evidence=IPI

GO:0009862 "systemic acquired resistance, salicylic acid mediated signaling pathway" evidence=RCA;IPI

GO:0005516 "calmodulin binding" evidence=IDA;TAS

GO:0042742 "defense response to bacterium" evidence=RCA;IMP

GO:0000165 "MAPK cascade" evidence=RCA

GO:0006612 "protein targeting to membrane" evidence=RCA

GO:0009410 "response to xenobiotic stimulus" evidence=RCA

GO:0009595 "detection of biotic stimulus" evidence=RCA

GO:0009617 "response to bacterium" evidence=RCA

GO:0009697 "salicylic acid biosynthetic process" evidence=RCA

GO:0009863 "salicylic acid mediated signaling pathway" evidence=RCA

GO:0009867 "jasmonic acid mediated signaling pathway" evidence=RCA

GO:0010200 "response to chitin" evidence=RCA

GO:0010310 "regulation of hydrogen peroxide metabolic process" evidence=RCA

GO:0010363 "regulation of plant-type hypersensitive response" evidence=RCA

GO:0016045 "detection of bacterium" evidence=RCA

GO:0030968 "endoplasmic reticulum unfolded protein response" evidence=RCA

GO:0031347 "regulation of defense response" evidence=RCA

GO:0031348 "negative regulation of defense response" evidence=RCA

GO:0035304 "regulation of protein dephosphorylation" evidence=RCA

GO:0043069 "negative regulation of programmed cell death" evidence=RCA

GO:0043900 "regulation of multi-organism process" evidence=RCA

GO:0045088 "regulation of innate immune response" evidence=RCA

GO:0050776 "regulation of immune response" evidence=RCA

GO:0050832 "defense response to fungus" evidence=RCA

GO:0051707 "response to other organism" evidence=RCA

GO:0003677 "DNA binding" evidence=IDA

TAIR|locus:2171820 TGA1 "AT5G65210" [Arabidopsis thaliana (taxid:3702)]

 Score = 1063 (379.3 bits), Expect = 1.7e-107, P = 1.7e-107
 Identities = 216/366 (59%), Positives = 259/366 (70%)

Query:     1 MSSPSSQLATLRRMSIYEPFHQISMWGDTFHGDASP---NTGSSTIVQVDTRLDNQ-TEY 56
             M+S S+     RR+ IYEP HQ  MWG++F  + S    NT +  I+  + +LDN  +E 
Sbjct:     1 MNSTSTHFVPPRRVGIYEPVHQFGMWGESFKSNISNGTMNTPNHIIIPNNQKLDNNVSED 60

Query:    57 LSHNSV-EPSRSDQEAN--KPSEKTQRRLAQNREAARKSRLRKKAYVQQLESSRLKLAQL 113
              SH +   P   DQEA+  +  +K QRRLAQNREAARKSRLRKKAYVQQLE+SRLKL QL
Sbjct:    61 TSHGTAGTPHMFDQEASTSRHPDKIQRRLAQNREAARKSRLRKKAYVQQLETSRLKLIQL 120

Query:   114 EQELDRARRQGIYTGSTSDGSHFGLSGNINPGITAFEMEYSHWVEEQNRQIYELRNALQK 173
             EQELDRAR+QG Y G+  D +  G S  +NPGI AFEMEY HWVEEQNRQI ELR  L  
Sbjct:   121 EQELDRARQQGFYVGNGIDTNSLGFSETMNPGIAAFEMEYGHWVEEQNRQICELRTVLHG 180

Query:   174 HITDIELRILVENGLNHYNNLFRMKADAAKADVLSLISGMWRTSTERFFQWIGGFRPSEL 233
             HI DIELR LVEN + HY  LFRMK+ AAKADV  ++SGMWRTS ERFF WIGGFRPS+L
Sbjct:   181 HINDIELRSLVENAMKHYFELFRMKSSAAKADVFFVMSGMWRTSAERFFLWIGGFRPSDL 240

Query:   234 LNILMPQLEPLTEQQLIDVCNLRQSSQQAEDALQQGIDKLQQSLVQIITEEQLSSGIYQS 293
             L +L+P  + LT+QQL+DVCNL+QS QQAEDAL QG++KLQ +L   +   QL  G Y  
Sbjct:   241 LKVLLPHFDVLTDQQLLDVCNLKQSCQQAEDALTQGMEKLQHTLADCVAAGQLGEGSYIP 300

Query:   294 QMVAAAEKLEALESFVNQADHLRQQTMQQMYRVXXXXXXXXXXXXXGEYFHRLRALSSLW 353
             Q+ +A ++LEAL SFVNQADHLR +T+QQMYR+             GEYF RLRALSS W
Sbjct:   301 QVNSAMDRLEALVSFVNQADHLRHETLQQMYRILTTRQAARGLLALGEYFQRLRALSSSW 360

Query:   354 AAQHLE 359
             A +H E
Sbjct:   361 ATRHRE 366

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0005516 "calmodulin binding" evidence=ISS

GO:0005515 "protein binding" evidence=IPI

GO:0003677 "DNA binding" evidence=TAS

GO:0042742 "defense response to bacterium" evidence=IMP

GO:0043565 "sequence-specific DNA binding" evidence=IDA

GO:0009410 "response to xenobiotic stimulus" evidence=RCA

GO:0009617 "response to bacterium" evidence=RCA

GO:0009862 "systemic acquired resistance, salicylic acid mediated signaling pathway" evidence=RCA

GO:0010043 "response to zinc ion" evidence=RCA

GO:0010167 "response to nitrate" evidence=RCA

GO:0010260 "organ senescence" evidence=RCA

GO:0015706 "nitrate transport" evidence=RCA

GO:0030968 "endoplasmic reticulum unfolded protein response" evidence=RCA

TAIR|locus:2184078 TGA4 "AT5G10030" [Arabidopsis thaliana (taxid:3702)]

 Score = 1030 (367.6 bits), Expect = 5.3e-104, P = 5.3e-104
 Identities = 206/362 (56%), Positives = 254/362 (70%)

Query:     1 MSSPSSQLATLRRMSIYEPFHQISMWGDTFHGDASPNTGSSTIVQVDTRLDNQTEYLSHN 60
             M++ S+     RR  +YEP +QI MW ++F  +    T  S I+  + + D+ +E  SH 
Sbjct:     1 MNTTSTHFVPPRRFEVYEPLNQIGMWEESFKNNGDMYTPGSIIIPTNEKPDSLSEDTSHG 60

Query:    61 SV-EPSRSDQEAN--KPSEKTQRRLAQNREAARKSRLRKKAYVQQLESSRLKLAQLEQEL 117
             +   P + DQEA+  +  +K QRRLAQNREAARKSRLRKKAYVQQLE+SRLKL  LEQEL
Sbjct:    61 TEGTPHKFDQEASTSRHPDKIQRRLAQNREAARKSRLRKKAYVQQLETSRLKLIHLEQEL 120

Query:   118 DRARRQGIYTGSTSDGSHFGLSGNINPGITAFEMEYSHWVEEQNRQIYELRNALQKHITD 177
             DRAR+QG Y G+  D +    S N++ GI AFEMEY HWVEEQNRQI ELR  L   ++D
Sbjct:   121 DRARQQGFYVGNGVDTNALSFSDNMSSGIVAFEMEYGHWVEEQNRQICELRTVLHGQVSD 180

Query:   178 IELRILVENGLNHYNNLFRMKADAAKADVLSLISGMWRTSTERFFQWIGGFRPSELLNIL 237
             IELR LVEN + HY  LFRMK+ AAK DV  ++SGMW+TS ERFF WIGGFRPSELL +L
Sbjct:   181 IELRSLVENAMKHYFQLFRMKSAAAKIDVFYVMSGMWKTSAERFFLWIGGFRPSELLKVL 240

Query:   238 MPQLEPLTEQQLIDVCNLRQSSQQAEDALQQGIDKLQQSLVQIITEEQLSSGIYQSQMVA 297
             +P  +PLT+QQL+DVCNLRQS QQAEDAL QG++KLQ +L + +   +L  G Y  QM  
Sbjct:   241 LPHFDPLTDQQLLDVCNLRQSCQQAEDALSQGMEKLQHTLAESVAAGKLGEGSYIPQMTC 300

Query:   298 AAEKLEALESFVNQADHLRQQTMQQMYRVXXXXXXXXXXXXXGEYFHRLRALSSLWAAQH 357
             A E+LEAL SFVNQADHLR +T+QQM+R+             GEYF RLRALSS WAA+ 
Sbjct:   301 AMERLEALVSFVNQADHLRHETLQQMHRILTTRQAARGLLALGEYFQRLRALSSSWAARQ 360

Query:   358 LE 359
              E
Sbjct:   361 RE 362

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS;NAS

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0005516 "calmodulin binding" evidence=ISS

GO:0005515 "protein binding" evidence=IPI

GO:0009409 "response to cold" evidence=IEP

GO:0042742 "defense response to bacterium" evidence=IGI

GO:0006857 "oligopeptide transport" evidence=RCA

GO:0009410 "response to xenobiotic stimulus" evidence=RCA

GO:0030968 "endoplasmic reticulum unfolded protein response" evidence=RCA

GO:0003677 "DNA binding" evidence=TAS

UNIPROTKB|Q9SQK1 TGA2.2 "BZIP transcription factor" [Nicotiana tabacum (taxid:4097)]

 Score = 818 (293.0 bits), Expect = 1.5e-81, P = 1.5e-81
 Identities = 179/333 (53%), Positives = 225/333 (67%)

Query:    33 DASPNTGSSTIVQVDTRLDNQTEYLSHNSVEPSRSDQEANKPSEKTQRRLAQNREAARKS 92
             D SP+T  ST    DT  +++  +L+   +    SD       +KT RRLAQNREAARKS
Sbjct:     3 DISPST--ST--DADT--EDKNRFLNSQQLGAVASDGSDRTRDQKTLRRLAQNREAARKS 56

Query:    93 RLRKKAYVQQLESSRLKLAQLEQELDRARRQGIYTGSTSDGSHFGLSGNINPGITAFEME 152
             RLRKKAYVQQLESSR+KL QLEQEL RAR+QGI+   + D S   +SGN   G  AF++E
Sbjct:    57 RLRKKAYVQQLESSRMKLTQLEQELQRARQQGIFISGSGDQSQ-SMSGN---GALAFDVE 112

Query:   153 YSHWVEEQNRQIYELRNALQKHITDIELRILVENGLNHYNNLFRMKADAAKADVLSLISG 212
             Y+ W+EEQNR+I ELR A+  H  D ELRI+V+  L HY+++FR+K DAAK+DV  ++SG
Sbjct:   113 YARWLEEQNRRINELRGAVNSHAGDGELRIIVDGILAHYDDIFRIKGDAAKSDVFHILSG 172

Query:   213 MWRTSTERFFQWIGGFRPSELLNILMPQLEPLTEQQLIDVCNLRQSSQQAEDALQQGIDK 272
             MW+T  ER F W+GGFR SELL +L+ QLEPLTEQQL+ + NL+QSSQQAEDAL QG++ 
Sbjct:   173 MWKTPAERCFLWLGGFRSSELLKLLINQLEPLTEQQLLAINNLQQSSQQAEDALSQGMEA 232

Query:   273 LQQSLVQIITEE---QLSSGI---YQSQMVAAAEKLEALESFVNQADHLRQQTMQQMYRV 326
             LQQSL + +        SSG    Y  QM  A  KL  LE F+ QAD+LRQQT+QQM+R+
Sbjct:   233 LQQSLAETLAGSLGPSSSSGNVANYMGQMAMAMGKLGTLEGFIRQADNLRQQTLQQMHRI 292

Query:   327 XXXXXXXXXXXXXGEYFHRLRALSSLWAAQHLE 359
                           +YF RLRALSSLW A+  E
Sbjct:   293 LTTRQSARALLAISDYFSRLRALSSLWLARPRE 325

GO:0005515 "protein binding" evidence=IPI

TAIR|locus:2169394 AHBP-1B "AT5G06950" [Arabidopsis thaliana (taxid:3702)]

 Score = 804 (288.1 bits), Expect = 4.7e-80, P = 4.7e-80
 Identities = 177/333 (53%), Positives = 218/333 (65%)

Query:    33 DASPNTGSSTIVQVDTRLDNQTEYLSHNSVEPSRSDQEANKPSEKTQRRLAQNREAARKS 92
             D SP T  ST    D   D  +E    N+     SD+   K  +KT RRLAQNREAARKS
Sbjct:     3 DTSPRTDVSTDDDTD-HPDLGSEGALVNTAASDSSDRSKGKMDQKTLRRLAQNREAARKS 61

Query:    93 RLRKKAYVQQLESSRLKLAQLEQELDRARRQGIYTGSTSDGSHFGLSGNINPGITAFEME 152
             RLRKKAYVQQLE+SRLKL QLEQEL RAR+QG++   T D +H    GN   G  AF+ E
Sbjct:    62 RLRKKAYVQQLENSRLKLTQLEQELQRARQQGVFISGTGDQAH-STGGN---GALAFDAE 117

Query:   153 YSHWVEEQNRQIYELRNALQKHITDIELRILVENGLNHYNNLFRMKADAAKADVLSLISG 212
             +S W+EE+N+Q+ ELR+AL  H  D ELRI+V+  + HY  LFR+K++AAK DV  L+SG
Sbjct:   118 HSRWLEEKNKQMNELRSALNAHAGDSELRIIVDGVMAHYEELFRIKSNAAKNDVFHLLSG 177

Query:   213 MWRTSTERFFQWIGGFRPSELLNILMPQLEPLTEQQLIDVCNLRQSSQQAEDALQQGIDK 272
             MW+T  ER F W+GGFR SELL +L  QLEP+TE+QL+ + NL+Q+SQQAEDAL QG++ 
Sbjct:   178 MWKTPAERCFLWLGGFRSSELLKLLANQLEPMTERQLMGINNLQQTSQQAEDALSQGMES 237

Query:   273 LQQSLVQIITEEQL---SSG---IYQSQMVAAAEKLEALESFVNQADHLRQQTMQQMYRV 326
             LQQSL   ++   L   SSG    Y  QM  A  KL  LE F+ QAD+LR QT+QQM RV
Sbjct:   238 LQQSLADTLSSGTLGSSSSGNVASYMGQMAMAMGKLGTLEGFIRQADNLRLQTLQQMIRV 297

Query:   327 XXXXXXXXXXXXXGEYFHRLRALSSLWAAQHLE 359
                           +YF RLRALSSLW A+  E
Sbjct:   298 LTTRQSARALLAIHDYFSRLRALSSLWLARPRE 330

GO:0003677 "DNA binding" evidence=ISS;IDA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS;IDA;TAS

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0043565 "sequence-specific DNA binding" evidence=IEA

GO:0046983 "protein dimerization activity" evidence=IEA

GO:0005515 "protein binding" evidence=IPI

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=RCA;IDA

GO:0005737 "cytoplasm" evidence=IDA

GO:0009862 "systemic acquired resistance, salicylic acid mediated signaling pathway" evidence=RCA;TAS

GO:0045892 "negative regulation of transcription, DNA-dependent" evidence=IGI

GO:0009410 "response to xenobiotic stimulus" evidence=IGI;RCA

GO:0007062 "sister chromatid cohesion" evidence=RCA

GO:0009617 "response to bacterium" evidence=RCA

GO:0030968 "endoplasmic reticulum unfolded protein response" evidence=RCA

GO:0031048 "chromatin silencing by small RNA" evidence=RCA

GO:0045132 "meiotic chromosome segregation" evidence=RCA

GO:0048522 "positive regulation of cellular process" evidence=RCA

TAIR|locus:2169409 OBF5 "AT5G06960" [Arabidopsis thaliana (taxid:3702)]

 Score = 798 (286.0 bits), Expect = 2.0e-79, P = 2.0e-79
 Identities = 177/335 (52%), Positives = 219/335 (65%)

Query:    32 GDASPNTGSSTIVQVDTRLDNQTEYLSHNSVEPS-RSDQEANKPSEKTQRRLAQNREAAR 90
             GD SP T  ST    DT  +N      H  +  S  SD+  +K  +KT RRLAQNREAAR
Sbjct:     2 GDTSPRTSVST--DGDTDHNNLMFDEGHLGIGASDSSDRSKSKMDQKTLRRLAQNREAAR 59

Query:    91 KSRLRKKAYVQQLESSRLKLAQLEQELDRARRQGIYTGSTSDGSHFGLSGNINPGITAFE 150
             KSRLRKKAYVQQLE+SRLKL QLEQEL RAR+QG++  S+ D +H   +G+   G  AF+
Sbjct:    60 KSRLRKKAYVQQLENSRLKLTQLEQELQRARQQGVFISSSGDQAH-STAGD---GAMAFD 115

Query:   151 MEYSHWVEEQNRQIYELRNALQKHITDIELRILVENGLNHYNNLFRMKADAAKADVLSLI 210
             +EY  W E++NRQ+ EL +A+  H TD ELRI+V+  + HY  L+R+K +AAK+DV  L+
Sbjct:   116 VEYRRWQEDKNRQMKELSSAIDSHATDSELRIIVDGVIAHYEELYRIKGNAAKSDVFHLL 175

Query:   211 SGMWRTSTERFFQWIGGFRPSELLNILMPQLEPLTEQQLIDVCNLRQSSQQAEDALQQGI 270
             SGMW+T  ER F W+GGFR SELL ++  QLEPLTEQQ +D+ NL+QSSQQAEDAL QG+
Sbjct:   176 SGMWKTPAERCFLWLGGFRSSELLKLIASQLEPLTEQQSLDINNLQQSSQQAEDALSQGM 235

Query:   271 DKLQQSLVQIITEEQL---SSG---IYQSQMVAAAEKLEALESFVNQADHLRQQTMQQMY 324
             D LQQSL   ++   L   SSG    Y  QM  A  KL  LE F+ QAD+LR QT QQM 
Sbjct:   236 DNLQQSLADTLSSGTLGSSSSGNVASYMGQMAMAMGKLGTLEGFIRQADNLRLQTYQQMV 295

Query:   325 RVXXXXXXXXXXXXXGEYFHRLRALSSLWAAQHLE 359
             R+               Y  RLRALSSLW A+  E
Sbjct:   296 RLLTTRQSARALLAVHNYTLRLRALSSLWLARPRE 330

GO:0003677 "DNA binding" evidence=ISS;IDA;NAS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0043565 "sequence-specific DNA binding" evidence=IEA

GO:0046983 "protein dimerization activity" evidence=IEA

GO:0009863 "salicylic acid mediated signaling pathway" evidence=RCA;IDA

GO:0005515 "protein binding" evidence=IPI

GO:0042802 "identical protein binding" evidence=IPI

GO:0009410 "response to xenobiotic stimulus" evidence=IGI;RCA

GO:0000278 "mitotic cell cycle" evidence=RCA

GO:0000303 "response to superoxide" evidence=RCA

GO:0006396 "RNA processing" evidence=RCA

GO:0008219 "cell death" evidence=RCA

GO:0009617 "response to bacterium" evidence=RCA

GO:0009651 "response to salt stress" evidence=RCA

GO:0009733 "response to auxin stimulus" evidence=RCA

GO:0009737 "response to abscisic acid stimulus" evidence=RCA

GO:0009743 "response to carbohydrate stimulus" evidence=RCA

GO:0009862 "systemic acquired resistance, salicylic acid mediated signaling pathway" evidence=RCA

GO:0009873 "ethylene mediated signaling pathway" evidence=RCA

GO:0030968 "endoplasmic reticulum unfolded protein response" evidence=RCA

GO:0048522 "positive regulation of cellular process" evidence=RCA

GO:0009814 "defense response, incompatible interaction" evidence=TAS

TAIR|locus:2082234 TGA6 "AT3G12250" [Arabidopsis thaliana (taxid:3702)]

 Score = 768 (275.4 bits), Expect = 3.1e-76, P = 3.1e-76
 Identities = 164/307 (53%), Positives = 208/307 (67%)

Query:    59 HNSVEPSRSDQEANKPSEKTQRRLAQNREAARKSRLRKKAYVQQLESSRLKLAQLEQELD 118
             H +   S SD+  +K  +KT RRLAQNREAARKSRLRKKAYVQQLE+SRLKL QLEQEL 
Sbjct:    54 HAAASDS-SDRSKDKLDQKTLRRLAQNREAARKSRLRKKAYVQQLENSRLKLTQLEQELQ 112

Query:   119 RARRQGIYTGSTSDGSHFGLSGNINPGITAFEMEYSHWVEEQNRQIYELRNALQKHITDI 178
             RAR+QG++  S+ D +H    GN   G  AF+ E+S W+EE+NRQ+ ELR+AL  H  D 
Sbjct:   113 RARQQGVFISSSGDQAH-STGGN---GALAFDAEHSRWLEEKNRQMNELRSALNAHAGDT 168

Query:   179 ELRILVENGLNHYNNLFRMKADAAKADVLSLISGMWRTSTERFFQWIGGFRPSELLNILM 238
             ELRI+V+  + HY  LFR+K++AAK DV  L+SGMW+T  ER F W+GGFR SELL +L 
Sbjct:   169 ELRIIVDGVMAHYEELFRIKSNAAKNDVFHLLSGMWKTPAERCFLWLGGFRSSELLKLLA 228

Query:   239 PQLEPLTEQQLIDVCNLRQSSQQAEDALQQGIDKLQQSLVQIITEEQLSSGI------YQ 292
              QLEP+TE+Q++ + +L+Q+SQQAEDAL QG++ LQQSL   ++   L S        Y 
Sbjct:   229 NQLEPMTERQVMGINSLQQTSQQAEDALSQGMESLQQSLADTLSSGTLGSSSSDNVASYM 288

Query:   293 SQMVAAAEKLEALESFVNQADHLRQQTMQQMYRVXXXXXXXXXXXXXGEYFHRLRALSSL 352
              QM  A  +L  LE F+ QAD+LR QT+QQM RV              +Y  RLRALSSL
Sbjct:   289 GQMAMAMGQLGTLEGFIRQADNLRLQTLQQMLRVLTTRQSARALLAIHDYSSRLRALSSL 348

Query:   353 WAAQHLE 359
             W A+  E
Sbjct:   349 WLARPRE 355

GO:0003677 "DNA binding" evidence=ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS;IDA;IMP

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0009627 "systemic acquired resistance" evidence=IPI

GO:0005515 "protein binding" evidence=IPI

GO:0009410 "response to xenobiotic stimulus" evidence=IGI;RCA

GO:0009617 "response to bacterium" evidence=RCA

GO:0009862 "systemic acquired resistance, salicylic acid mediated signaling pathway" evidence=RCA

GO:0030968 "endoplasmic reticulum unfolded protein response" evidence=RCA

TAIR|locus:2026890 PAN "AT1G68640" [Arabidopsis thaliana (taxid:3702)]

 Score = 753 (270.1 bits), Expect = 1.2e-74, P = 1.2e-74
 Identities = 163/345 (47%), Positives = 226/345 (65%)

Query:    24 SMWGDTFHGDASPNTGSSTIVQVDTRLDNQTEYLS-HNSV--EPSRSDQEANKPSE-KTQ 79
             S W D+    A  +  + T   +DT  D++T+    H  +    + SDQ   K S+ +T 
Sbjct:   111 SSWCDSVSAMADNSQHTDTSTDIDT--DDKTQLNGGHQGMLLATNCSDQSNVKSSDQRTL 168

Query:    80 RRLAQNREAARKSRLRKKAYVQQLESSRLKLAQLEQELDRARRQG--IYTGSTSDGSHFG 137
             RRLAQNREAARKSRLRKKAYVQQLE+SR++LAQLE+EL RAR+QG  +  G ++D +H  
Sbjct:   169 RRLAQNREAARKSRLRKKAYVQQLENSRIRLAQLEEELKRARQQGSLVERGVSADHTHLA 228

Query:   138 LSGNINPGITAFEMEYSHWVEEQNRQIYELRNALQKHITDIELRILVENGLNHYNNLFRM 197
              +GN   G+ +FE+EY+ W EE  R I +LR+ +   + D +LR+LV+  ++HY+ +FR+
Sbjct:   229 -AGN---GVFSFELEYTRWKEEHQRMINDLRSGVNSQLGDNDLRVLVDAVMSHYDEIFRL 284

Query:   198 KADAAKADVLSLISGMWRTSTERFFQWIGGFRPSELLNILMPQLEPLTEQQLIDVCNLRQ 257
             K    K DV  ++SGMW+T  ERFF W+GGFR SELL IL   ++PLT+QQLI +CNL+Q
Sbjct:   285 KGIGTKVDVFHMLSGMWKTPAERFFMWLGGFRSSELLKILGNHVDPLTDQQLIGICNLQQ 344

Query:   258 SSQQAEDALQQGIDKLQQSLVQIITEEQL----SSGI--YQSQMVAAAEKLEALESFVNQ 311
             SSQQAEDAL QG++ LQQSL++ ++   +    S+ +  Y   M  A  KL  LE+F+ Q
Sbjct:   345 SSQQAEDALSQGMEALQQSLLETLSSASMGPNSSANVADYMGHMAMAMGKLGTLENFLRQ 404

Query:   312 ADHLRQQTMQQMYRVXXXXXXXXXXXXXGEYFHRLRALSSLWAAQ 356
             AD LRQQT+QQ++R+              +Y  RLRALSSLW A+
Sbjct:   405 ADLLRQQTLQQLHRILTTRQAARAFLVIHDYISRLRALSSLWLAR 449

GO:0003677 "DNA binding" evidence=ISS;IPI

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS;IDA

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0043565 "sequence-specific DNA binding" evidence=IEA

GO:0046983 "protein dimerization activity" evidence=IEA

GO:0005515 "protein binding" evidence=IPI

GO:0009909 "regulation of flower development" evidence=IMP

GO:0009410 "response to xenobiotic stimulus" evidence=RCA

GO:0030968 "endoplasmic reticulum unfolded protein response" evidence=RCA

GO:0048451 "petal formation" evidence=RCA

GO:0048453 "sepal formation" evidence=RCA

TAIR|locus:2199968 TGA9 "AT1G08320" [Arabidopsis thaliana (taxid:3702)]

 Score = 717 (257.5 bits), Expect = 7.7e-71, P = 7.7e-71
 Identities = 150/300 (50%), Positives = 201/300 (67%)

Query:    63 EPSRSDQEANKPSE-KTQRRLAQNREAARKSRLRKKAYVQQLESSRLKLAQLEQELDRAR 121
             E  R    + K  + KT RRLAQNREAARKSRLRKKAYVQQLESSR+KL+QLEQEL RAR
Sbjct:   163 EDKRKATTSGKQLDAKTLRRLAQNREAARKSRLRKKAYVQQLESSRIKLSQLEQELQRAR 222

Query:   122 RQGIYTGSTSDGSHFGLSG-NINPGITAFEMEYSHWVEEQNRQIYELRNALQKHITDIEL 180
              QG++ G        G  G NI  G   F+MEY  W+E+ NR + E+R  LQ H++D +L
Sbjct:   223 SQGLFMGGC------GPPGPNITSGAAIFDMEYGRWLEDDNRHMSEIRTGLQAHLSDNDL 276

Query:   181 RILVENGLNHYNNLFRMKADAAKADVLSLISGMWRTSTERFFQWIGGFRPSELLNILMPQ 240
             R++V+  + H++ +FR+KA AAKADV  LI G W +  ER F W+ GFRPS+L+ IL+ Q
Sbjct:   277 RLIVDGYIAHFDEIFRLKAVAAKADVFHLIIGTWMSPAERCFIWMAGFRPSDLIKILVSQ 336

Query:   241 LEPLTEQQLIDVCNLRQSSQQAEDALQQGIDKLQQSLVQIITEEQLSSGIYQSQMVAAAE 300
             ++ LTEQQL+ + +L+ SSQQAE+AL QG+++LQQSL+  +    +  G+   QM  A  
Sbjct:   337 MDLLTEQQLMGIYSLQHSSQQAEEALSQGLEQLQQSLIDTLAASPVIDGM--QQMAVALG 394

Query:   301 KLEALESFVNQADHLRQQTMQQMYRVXXXXXXXXXXXXXGEYFHRLRALSSLWAAQHLES 360
             K+  LE F+ QAD+LRQQT+ Q+ R+             GEY+ RLRALSSLW ++  E+
Sbjct:   395 KISNLEGFIRQADNLRQQTVHQLRRILTVRQAARCFLVIGEYYGRLRALSSLWLSRPRET 454

GO:0003677 "DNA binding" evidence=ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0043565 "sequence-specific DNA binding" evidence=IEA

GO:0046983 "protein dimerization activity" evidence=IEA

GO:0009612 "response to mechanical stimulus" evidence=RCA

GO:0019722 "calcium-mediated signaling" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q93ZE2	TGA7_ARATH	No assigned EC number	0.6395	0.9529	0.9347	yes	no
P23923	HBP1B_WHEAT	No assigned EC number	0.5539	0.8753	0.9518	N/A	no
P14232	TGA1A_TOBAC	No assigned EC number	0.5926	0.9445	0.9498	N/A	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	361
pfam14144	79	pfam14144, DOG1, Seed dormancy control	9e-38
smart00338	65	smart00338, BRLZ, basic region leucin zipper	8e-09
pfam00170	64	pfam00170, bZIP_1, bZIP transcription factor	3e-07
pfam07716	54	pfam07716, bZIP_2, Basic region leucine zipper	1e-04
cd12193	54	cd12193, B_zip1, basic leucine zipper DNA-binding	0.002

>gnl|CDD|206313 pfam14144, DOG1, Seed dormancy control

 Score =  130 bits (328), Expect = 9e-38
 Identities = 46/79 (58%), Positives = 55/79 (69%)

Query: 162 RQIYELRNALQKHITDIELRILVENGLNHYNNLFRMKADAAKADVLSLISGMWRTSTERF 221
           R + ELR AL  H +D ELR LV+  L HY+  FR+K+ AAKADV  L+SGMW+T  ER 
Sbjct: 1   RLLAELRAALNAHASDDELRSLVDKVLAHYDEYFRLKSAAAKADVFHLLSGMWKTPAERC 60

Query: 222 FQWIGGFRPSELLNILMPQ 240
           F WIGGFRPSELL +L   
Sbjct: 61  FLWIGGFRPSELLKLLYSL 79

This family of plant proteins appears to be a highly specific controller seed dormancy. Length = 79

>gnl|CDD|197664 smart00338, BRLZ, basic region leucin zipper

 Score = 51.0 bits (123), Expect = 8e-09
 Identities = 24/55 (43%), Positives = 38/55 (69%), Gaps = 4/55 (7%)

Query: 73  KPSEKTQRRLAQNREAARKSRLRKKAYVQQLESSRLKL----AQLEQELDRARRQ 123
           +  EK +RR  +NREAAR+SR RKKA +++LE    +L     +L++E++R RR+
Sbjct: 1   EEDEKRRRRRERNREAARRSRERKKAEIEELERKVEQLEAENERLKKEIERLRRE 55

Length = 65

>gnl|CDD|201054 pfam00170, bZIP_1, bZIP transcription factor

 Score = 46.5 bits (111), Expect = 3e-07
 Identities = 23/44 (52%), Positives = 32/44 (72%), Gaps = 3/44 (6%)

Query: 73  KPSEKTQRRLAQNREAARKSRLRKKAYVQQLESSRLKLAQLEQE 116
           +   K +RR  +NREAAR+SRLRKKAY+++LE    K+ +LE E
Sbjct: 1   EKELKRERRRQKNREAARRSRLRKKAYIEELEE---KVKELEAE 41

The Pfam entry includes the basic region and the leucine zipper region. Length = 64

>gnl|CDD|203738 pfam07716, bZIP_2, Basic region leucine zipper

 Score = 39.1 bits (92), Expect = 1e-04
 Identities = 20/55 (36%), Positives = 32/55 (58%), Gaps = 5/55 (9%)

Query: 73  KPSEKTQRRLAQNREAARKSRLRKKAYVQQLESSRLKL----AQLEQELDRARRQ 123
           K  E   RR  +N EAAR+SR +KK   ++LE    +L    AQL Q++++  ++
Sbjct: 1   KDDEYRDRRR-RNNEAARRSREKKKQREEELEERVKELEEENAQLRQKVEQLEKE 54

Length = 54

>gnl|CDD|213400 cd12193, B_zip1, basic leucine zipper DNA-binding and multimerization region of GCN4 and related proteins

 Score = 36.1 bits (84), Expect = 0.002
 Identities = 21/51 (41%), Positives = 30/51 (58%), Gaps = 4/51 (7%)

Query: 77  KTQRRLAQNREAARKSRLRKKAYVQQLESSRLKLAQ----LEQELDRARRQ 123
              R+ A+NREAAR+SR RK   ++QLE    +L      LE E+DR ++ 
Sbjct: 2   PRARKRARNREAARRSRARKMERMKQLEDKVEELTSENSDLEDEVDRLKKA 52

Basic leucine zipper (bZIP) transcription factors act in networks of homo- and hetero-dimers in the regulation in a diverse set of cellular pathways. Classical leucine zippers have alpha helices with leucine residues 7 amino acids apart, which stabilize dimerization with a parallel leucine zipper domain. Dimerization creates a pair of basic regions that bind DNA and undergo conformational change. GCN4 was identified in Saccharomyces cerevisiae from mutations in a deficiency in activation with the general amino acid control pathway. GCN4 encodes a trans-activator of amino acid biosynthetic genes containing 2 acidic activation domains and a C-terminal bZIP domain, comprised of a basic alpha-helical DNA-binding region and a coiled-coil dimerization region. Length = 54

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	361
PF14144	80	DOG1: Seed dormancy control	100.0
smart00338	65	BRLZ basic region leucin zipper.	98.69
PF00170	64	bZIP_1: bZIP transcription factor cAMP response el	98.61
PF07716	54	bZIP_2: Basic region leucine zipper; InterPro: IPR	98.53
KOG3584	348	consensus cAMP response element binding protein an	98.04
COG3678	160	CpxP P pilus assembly/Cpx signaling pathway, perip	96.7
PF13801	125	Metal_resist: Heavy-metal resistance; PDB: 3EPV_C	96.5
KOG4343	655	consensus bZIP transcription factor ATF6 [Transcri	96.49
PF03131	92	bZIP_Maf: bZIP Maf transcription factor; InterPro:	96.45
PRK12750	170	cpxP periplasmic repressor CpxP; Reviewed	96.1
KOG0709	472	consensus CREB/ATF family transcription factor [Tr	94.69
PRK10455	161	periplasmic protein; Reviewed	93.99
KOG0837	279	consensus Transcriptional activator of the JUN fam	92.06
PRK10363	166	cpxP periplasmic repressor CpxP; Reviewed	91.77
PRK12751	162	cpxP periplasmic stress adaptor protein CpxP; Revi	91.63
PF07813	100	LTXXQ: LTXXQ motif family protein; InterPro: IPR01	91.62
KOG4005	292	consensus Transcription factor XBP-1 [Transcriptio	90.93

>PF14144 DOG1: Seed dormancy control

Probab=100.00  E-value=4e-34  Score=229.67  Aligned_cols=79  Identities=53%  Similarity=0.905  Sum_probs=76.5

Q ss_pred             HHHHHHHHHHhcCC-CchHHHHHHHHHHHHHHHHHHHHHHhhhhchhhhccCCCCChHHHHHHHhccCCchhhHHhhcCC
Q 036441          162 RQIYELRNALQKHI-TDIELRILVENGLNHYNNLFRMKADAAKADVLSLISGMWRTSTERFFQWIGGFRPSELLNILMPQ  240 (361)
Q Consensus       162 ~~l~eLr~AL~s~~-~d~eL~~LVd~~l~HY~e~f~~Ks~aA~~DVf~llsg~W~tp~Er~FLWiGGfRPS~llkLL~~~  240 (361)
                      +++.|||+|++++. +|.+|+.||+++++||++||++|+.+|++|||++|+|+|+||+||||+||||||||++||||+++
T Consensus         1 ~~l~eLr~al~~~~~~~~~L~~lV~~~~~Hy~~y~~~K~~aa~~DV~~~~s~~W~sp~Er~flWiGG~RPS~~~~ll~s~   80 (80)
T PF14144_consen    1 RQLNELRAALQSHADSDDELRSLVDKVMSHYDEYYRAKSAAAKADVFHLLSPPWKSPLERCFLWIGGWRPSELFKLLYSQ   80 (80)
T ss_pred             CcHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHhCCCCCCHHHHHHHHHhcCCHHHHHHHHhcC
Confidence            47899999999998 89999999999999999999999999999999999999999999999999999999999999874

>smart00338 BRLZ basic region leucin zipper

Probab=98.69  E-value=5.1e-08  Score=74.81  Aligned_cols=45  Identities=53%  Similarity=0.700  Sum_probs=39.1

Q ss_pred             CChHHHHHHHhhHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 036441           74 PSEKTQRRLAQNREAARKSRLRKKAYVQQLESSRLKLAQLEQELDRAR  121 (361)
Q Consensus        74 ~~~k~~rrlaqnreaarksrlrkkayvq~le~sr~kl~qleqel~~~r  121 (361)
                      .++|-.||+.+||+||++||.|||.|++.||.   ++..|+.|....+
T Consensus         2 ~~~k~~rR~~rNR~aA~~~R~rKk~~~~~Le~---~~~~L~~en~~L~   46 (65)
T smart00338        2 EDEKRRRRRERNREAARRSRERKKAEIEELER---KVEQLEAENERLK   46 (65)
T ss_pred             ccHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHH
Confidence            46789999999999999999999999999999   7777777666554

>PF00170 bZIP_1: bZIP transcription factor cAMP response element binding (CREB) protein signature fos transforming protein signature jun transcription factor signature; InterPro: IPR011616 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotic are proteins that contain a basic region mediating sequence-specific DNA-binding followed by a leucine zipper region (see IPR002158 from INTERPRO) required for dimerization

Probab=98.61  E-value=7.9e-08  Score=73.64  Aligned_cols=44  Identities=48%  Similarity=0.747  Sum_probs=37.6

Q ss_pred             ChHHHHHHHhhHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 036441           75 SEKTQRRLAQNREAARKSRLRKKAYVQQLESSRLKLAQLEQELDRAR  121 (361)
Q Consensus        75 ~~k~~rrlaqnreaarksrlrkkayvq~le~sr~kl~qleqel~~~r  121 (361)
                      ..|..+|+.+||+|||+||.|||.|+++||.   ++..|+.|....+
T Consensus         3 ~~k~~~rr~rNR~AAr~~R~RKk~~~~~Le~---~~~~L~~en~~L~   46 (64)
T PF00170_consen    3 EDKRERRRERNREAARRSRQRKKQYIEELEE---KVEELESENEELK   46 (64)
T ss_dssp             --CHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHhhHHHHHH---HHHHHHHHHHHHH
Confidence            3567899999999999999999999999999   8888887776555

; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 2H7H_B 2OQQ_B 1S9K_E 1JNM_A 1JUN_A 1FOS_H 1A02_J 1T2K_C 1CI6_A 1DH3_C ....

>PF07716 bZIP_2: Basic region leucine zipper; InterPro: IPR011700 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotes are proteins that contain a basic region mediating sequence-specific DNA-binding, followed by a leucine zipper region (see IPR002158 from INTERPRO), which is required for dimerization

Probab=98.53  E-value=2.5e-07  Score=68.90  Aligned_cols=46  Identities=46%  Similarity=0.647  Sum_probs=39.5

Q ss_pred             CChHHHHHHHhhHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 036441           74 PSEKTQRRLAQNREAARKSRLRKKAYVQQLESSRLKLAQLEQELDRARRQ  123 (361)
Q Consensus        74 ~~~k~~rrlaqnreaarksrlrkkayvq~le~sr~kl~qleqel~~~r~q  123 (361)
                      .+++..+|. .||+||++||-|||.|++.||.   ++.+|+.|....+++
T Consensus         2 ~~~~~~rR~-rNr~AA~r~R~rkk~~~~~le~---~~~~L~~en~~L~~~   47 (54)
T PF07716_consen    2 DEEKRERRE-RNREAARRSRQRKKQREEELEQ---EVQELEEENEQLRQE   47 (54)
T ss_dssp             CHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHH
T ss_pred             cHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHH
Confidence            467888999 9999999999999999999999   888887777766543

; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1NWQ_A 1H89_B 1H88_A 1GTW_B 2E43_A 1IO4_A 1GU4_B 2E42_A 1H8A_B 1GU5_B ....

>KOG3584 consensus cAMP response element binding protein and related transcription factors [Transcription]

Probab=98.04  E-value=5.2e-06  Score=81.12  Aligned_cols=40  Identities=48%  Similarity=0.690  Sum_probs=34.4

Q ss_pred             CCCChHHHHHHHhhHHHHHHhhHhHHHHHHHHHHHHHHHHHHH
Q 036441           72 NKPSEKTQRRLAQNREAARKSRLRKKAYVQQLESSRLKLAQLE  114 (361)
Q Consensus        72 ~~~~~k~~rrlaqnreaarksrlrkkayvq~le~sr~kl~qle  114 (361)
                      ....-|-.-||-+||||||.||..||-||..|||   |++=||
T Consensus       286 ee~trKRevRLmKNREAARECRRKKKEYVKCLEN---RVAVLE  325 (348)
T KOG3584|consen  286 EEATRKREVRLMKNREAARECRRKKKEYVKCLEN---RVAVLE  325 (348)
T ss_pred             hhhhhHHHHHHHhhHHHHHHHHHhHhHHHHHHHh---HHHHHh
Confidence            3445577789999999999999999999999999   777665

>COG3678 CpxP P pilus assembly/Cpx signaling pathway, periplasmic inhibitor/zinc-resistance associated protein [Intracellular trafficking and secretion / Cell motility and secretio / Signal transduction mechanisms / Inorganic ion transport and metabolism]

Probab=96.70  E-value=0.021  Score=51.92  Aligned_cols=108  Identities=25%  Similarity=0.336  Sum_probs=73.2

Q ss_pred             HHHHHHHhccCCchh---hHHhhcCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCchHHH
Q 036441          218 TERFFQWIGGFRPSE---LLNILMPQLEPLTEQQLIDVCNLRQSSQQAEDALQQGIDKLQQSLVQIITEEQLSSGIYQSQ  294 (361)
Q Consensus       218 ~Er~FLWiGGfRPS~---llkLL~~~LepLTeqQl~~I~~LqqstqqaEdaLsq~ma~LQqslad~~aa~~lg~~~~~~q  294 (361)
                      +... +|.|+|-|=-   .++.|     +||++|..+|..+...-+   .++.+-+..-...+-+.+.++....      
T Consensus        35 ~~~~-~~~g~~~~~~~~~~~~~l-----~lT~~Qrqqi~~i~~~~~---~a~~~~~~~~r~~l~~li~a~~~D~------   99 (160)
T COG3678          35 MADA-HHGGQFGPRHQGGMFKGL-----DLTRAQRQQIRDLMQAQR---RAQREQLRSKRRALHELIAADQFDE------   99 (160)
T ss_pred             cccc-ccCCCCCccccccccccc-----cccHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHhcCCcCH------
Confidence            4444 6888776653   24444     899999999998887766   4444444444445555554322222      


Q ss_pred             HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 036441          295 MVAAAEKLEALESFVNQADHLRQQTMQQMYRVLTTRQAARALLALGE  341 (361)
Q Consensus       295 m~~Am~kl~~Le~fl~qAD~LR~qTL~~l~~ILTp~QAA~fLlAl~e  341 (361)
                       +.|=...+.++....+.+.+|.++-.+|..||||.|.+.+=--.++
T Consensus       100 -aka~a~~~~m~~~~~~~~~~r~k~~~~m~~vLTPEQr~~l~~~~~~  145 (160)
T COG3678         100 -AKARAQAEKMENQRQALRELRVKSDNQMYQVLTPEQRAKLQELLAQ  145 (160)
T ss_pred             -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence             1222556778888899999999999999999999999776555444

>PF13801 Metal_resist: Heavy-metal resistance; PDB: 3EPV_C 2Y3D_A 2Y3H_D 2Y3G_B 2Y3B_A 2Y39_A 3LAY_H

Probab=96.50  E-value=0.03  Score=45.44  Aligned_cols=84  Identities=23%  Similarity=0.243  Sum_probs=64.5

Q ss_pred             CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCchHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Q 036441          243 PLTEQQLIDVCNLRQSSQQAEDALQQGIDKLQQSLVQIITEEQLSSGIYQSQMVAAAEKLEALESFVNQADHLRQQTMQQ  322 (361)
Q Consensus       243 pLTeqQl~~I~~LqqstqqaEdaLsq~ma~LQqslad~~aa~~lg~~~~~~qm~~Am~kl~~Le~fl~qAD~LR~qTL~~  322 (361)
                      +||++|..+|..+.......-..+-+.+......+...+.++++-.    ..++.+   ++.+...-.+....|.+++.+
T Consensus        41 ~Lt~eQ~~~l~~~~~~~~~~~~~~r~~~~~~r~~l~~ll~~~~~D~----~~i~a~---~~~~~~~~~~l~~~~~~~~~~  113 (125)
T PF13801_consen   41 NLTPEQQAKLRALMDEFRQEMRALRQELRAARQELRALLAAPPPDE----AAIEAL---LEEIREAQAELRQERLEHLLE  113 (125)
T ss_dssp             -TTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCSSS-H----HHHHHH---HHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCH----HHHHHH---HHHHHHHHHHHHHHHHHHHHH
Confidence            7999999999999999999999999999999999988875433322    133333   344555556667789999999


Q ss_pred             HHhcCCHHHHH
Q 036441          323 MYRVLTTRQAA  333 (361)
Q Consensus       323 l~~ILTp~QAA  333 (361)
                      +..+|||-|=+
T Consensus       114 ~~~~LtpeQR~  124 (125)
T PF13801_consen  114 IRAVLTPEQRA  124 (125)
T ss_dssp             HHHTT-GGGHH
T ss_pred             HHHcCCHHHhC
Confidence            99999998855

>KOG4343 consensus bZIP transcription factor ATF6 [Transcription]

Probab=96.49  E-value=0.0044  Score=65.25  Aligned_cols=47  Identities=34%  Similarity=0.493  Sum_probs=39.9

Q ss_pred             CCChHHH---HHHHhhHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 036441           73 KPSEKTQ---RRLAQNREAARKSRLRKKAYVQQLESSRLKLAQLEQELDRARR  122 (361)
Q Consensus        73 ~~~~k~~---rrlaqnreaarksrlrkkayvq~le~sr~kl~qleqel~~~r~  122 (361)
                      +.|+|++   .|..+|||.|--||.|||-|++-||.   +|..|++|-+..|.
T Consensus       274 ~~d~kv~krqQRmIKNResA~~SRkKKKEy~~~Le~---rLq~ll~Ene~Lk~  323 (655)
T KOG4343|consen  274 GSDIKVLKRQQRMIKNRESACQSRKKKKEYMLGLEA---RLQALLSENEQLKK  323 (655)
T ss_pred             ccCHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHh
Confidence            3466654   68999999999999999999999999   99999888776554

>PF03131 bZIP_Maf: bZIP Maf transcription factor; InterPro: IPR004826 There are several different types of Maf transcription factors with different roles in the cell

Probab=96.45  E-value=0.00055  Score=56.22  Aligned_cols=40  Identities=38%  Similarity=0.528  Sum_probs=32.5

Q ss_pred             hHHHHHHHhhHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHH
Q 036441           76 EKTQRRLAQNREAARKSRLRKKAYVQQLESSRLKLAQLEQELD  118 (361)
Q Consensus        76 ~k~~rrlaqnreaarksrlrkkayvq~le~sr~kl~qleqel~  118 (361)
                      -|-.||..+||.||++||-||+.++..||.   .+.+|.+++.
T Consensus        29 lK~~RRr~KNR~~A~~cR~rk~~~~~~Le~---e~~~l~~~~~   68 (92)
T PF03131_consen   29 LKQRRRRLKNRGYAQNCRKRKLDQIEELEE---EIEQLRQEIE   68 (92)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHCCCCCCCC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHH
Confidence            478899999999999999999999999998   4444443333

MafG and MafH are small Mafs which lack a putative transactivation domain. They behave as transcriptional repressors when they dimerize among themselves. However they also serve as transcriptional activators by dimerizing with other (usually larger) basic-zipper proteins and recruiting them to specific DNA-binding sites. Maf transcription factors contain a conserved basic region leucine zipper (bZIP) domain, which mediates their dimerization and DNA binding property. Neural retina-specific leucine zipper proteins also belong to this family. Together with the basic region, the Maf extended homology region (EHR), conserved only within the Maf family, defines the DNA binding specific to Mafs. This structure enables Mafs to make a broader area of contact with DNA and to recognise longer DNA sequences. In particular, the two residues at the beginning of helix H2 are positioned to recognise the flanking region []. Small Maf proteins heterodimerize with Fos and may act as competitive repressors of the NF2-E2 transcription factor. In mouse, Maf1 may play an early role in axial patterning. Defects in these proteins are a cause of autosomal dominant retinitis pigmentosa. ; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus; PDB: 2KZ5_A 3A5T_A 1K1V_A 1SKN_P 2WT7_B 2WTY_B.

>PRK12750 cpxP periplasmic repressor CpxP; Reviewed

Probab=96.10  E-value=0.27  Score=44.99  Aligned_cols=94  Identities=14%  Similarity=0.138  Sum_probs=59.0

Q ss_pred             CCcHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHhhhcccCCchHHHHHHHHHHHHHHHHHHHHHhH
Q 036441          243 PLTEQQLIDVCNLRQSSQQAEDA--------LQQGIDKLQQSLVQIITEEQLSSGIYQSQMVAAAEKLEALESFVNQADH  314 (361)
Q Consensus       243 pLTeqQl~~I~~LqqstqqaEda--------Lsq~ma~LQqslad~~aa~~lg~~~~~~qm~~Am~kl~~Le~fl~qAD~  314 (361)
                      +||++|...|..++...+..=.+        ....|....+.+.+.+.++++-+.    .+....+++   ..--.+.--
T Consensus        52 ~LTdeQk~qik~i~~~~r~~~k~~~~~~r~~~~~~m~a~~~~~~~Ll~a~~FDea----avral~~~~---~~~~~e~~v  124 (170)
T PRK12750         52 DLTDAQKEQLKEMREANRAEMKAKYSGNREQSHAEMKAHHAKVQALVLADDFDEA----AANDLAKQM---VEKQVERRV  124 (170)
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHHHhcCCCCHH----HHHHHHHHH---HHHHHHHHH
Confidence            89999999999998777764333        455566666677676655444432    121111211   111111112


Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHHHH
Q 036441          315 LRQQTMQQMYRVLTTRQAARALLALGEYF  343 (361)
Q Consensus       315 LR~qTL~~l~~ILTp~QAA~fLlAl~e~~  343 (361)
                      -|.++.+++..||||-|=+.|---..+..
T Consensus       125 ~~~~~~~~~~~vLTpEQRak~~e~~~~r~  153 (170)
T PRK12750        125 KMLEKRHQMLSILTPEQKAKFQELQQERM  153 (170)
T ss_pred             HHHHHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence            36678899999999999999887655543

>KOG0709 consensus CREB/ATF family transcription factor [Transcription]

Probab=94.69  E-value=0.028  Score=58.44  Aligned_cols=30  Identities=43%  Similarity=0.603  Sum_probs=28.2

Q ss_pred             hHHHHHHHhhHHHHHHhhHhHHHHHHHHHH
Q 036441           76 EKTQRRLAQNREAARKSRLRKKAYVQQLES  105 (361)
Q Consensus        76 ~k~~rrlaqnreaarksrlrkkayvq~le~  105 (361)
                      -|..||...|-+.|-.||-|||-||.+||.
T Consensus       250 LKrvRRKIrNK~SAQESRrkKkeYid~LE~  279 (472)
T KOG0709|consen  250 LKRVRRKIRNKRSAQESRRKKKEYIDGLES  279 (472)
T ss_pred             HHHHHHHHHhhhhhHHHHHhHhhHHHHHhh
Confidence            367799999999999999999999999999

>PRK10455 periplasmic protein; Reviewed

Probab=93.99  E-value=0.56  Score=42.63  Aligned_cols=102  Identities=17%  Similarity=0.188  Sum_probs=58.9

Q ss_pred             HHHHHhc---cCCchhhHHhhcCCCCCCcHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHhhhcccCCchHHHH
Q 036441          220 RFFQWIG---GFRPSELLNILMPQLEPLTEQQLIDVCNLRQSSQQAEDALQ-QGIDKLQQSLVQIITEEQLSSGIYQSQM  295 (361)
Q Consensus       220 r~FLWiG---GfRPS~llkLL~~~LepLTeqQl~~I~~LqqstqqaEdaLs-q~ma~LQqslad~~aa~~lg~~~~~~qm  295 (361)
                      .+.+|-|   |..+...|+-|     +||++|..+|..|.+..+..-...+ +..+.++    +.+.++++-.    ..+
T Consensus        35 ~~~~~~~~~~g~~~~~m~~~L-----~LT~~Qrqqir~im~~~r~~~~~~~~~~r~~l~----~li~ad~FDe----aav  101 (161)
T PRK10455         35 KPMMHHKGKFGPHHDMMFKGL-----NLTDAQKQQIRDIMKAQRDQMKRPPLEERRAMH----DIIASDTFDK----AKA  101 (161)
T ss_pred             CccccCCCCCCchhhhhhhhC-----CCCHHHHHHHHHHHHHHHHhhccccHHHHHHHH----HHHccCccCH----HHH
Confidence            3456654   44455555544     8999999999988777665533222 2333333    2233222222    123


Q ss_pred             HHHHHHHHHHHHHHHHHhHHHHHHHHHHHhcCCHHHHHHHHH
Q 036441          296 VAAAEKLEALESFVNQADHLRQQTMQQMYRVLTTRQAARALL  337 (361)
Q Consensus       296 ~~Am~kl~~Le~fl~qAD~LR~qTL~~l~~ILTp~QAA~fLl  337 (361)
                      ...++++..+   -.+.--.|.++-.+|..||||-|-+.|=-
T Consensus       102 ra~~~k~~~~---~~~~~~~~~~~~~qiy~vLTPEQr~q~~~  140 (161)
T PRK10455        102 EAQITKMEAQ---RKARMLAHMETQNKIYNVLTPEQKKQFNA  140 (161)
T ss_pred             HHHHHHHHHH---HHHHHHHHHHHHHHHHHhCCHHHHHHHHH
Confidence            3333444332   22222367888899999999999997753

>KOG0837 consensus Transcriptional activator of the JUN family [Transcription]

Probab=92.06  E-value=0.22  Score=48.72  Aligned_cols=29  Identities=45%  Similarity=0.556  Sum_probs=24.2

Q ss_pred             HHHHHHHhhHHHHHHhhHhHHHHHHHHHH
Q 036441           77 KTQRRLAQNREAARKSRLRKKAYVQQLES  105 (361)
Q Consensus        77 k~~rrlaqnreaarksrlrkkayvq~le~  105 (361)
                      |..|+=+.|||||+|||.||---|-+||.
T Consensus       206 kleRkrlrnreaa~Kcr~rkLdrisrLEd  234 (279)
T KOG0837|consen  206 KLERKRLRNREAASKCRKRKLDRISRLED  234 (279)
T ss_pred             HHHHHHhhhHHHHHHHHHHHHHHHHHHHh
Confidence            45566688999999999999887777776

>PRK10363 cpxP periplasmic repressor CpxP; Reviewed

Probab=91.77  E-value=2.6  Score=38.84  Aligned_cols=99  Identities=23%  Similarity=0.318  Sum_probs=61.1

Q ss_pred             CCcHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHhhhcccCCchHHHHHHHHHHHHH--HHHHHHHHhHHHHHH
Q 036441          243 PLTEQQLIDVCNLRQSSQQAEDALQQ-GIDKLQQSLVQIITEEQLSSGIYQSQMVAAAEKLEA--LESFVNQADHLRQQT  319 (361)
Q Consensus       243 pLTeqQl~~I~~LqqstqqaEdaLsq-~ma~LQqslad~~aa~~lg~~~~~~qm~~Am~kl~~--Le~fl~qAD~LR~qT  319 (361)
                      +||++|...|..|.+.-+.+...++. +++.++    +.+.++.+-+.    .+...++|+..  .+.-|     -|.++
T Consensus        50 dLTdaQRqQmRdLm~~~r~~~~~~~~~er~amh----~LI~ad~FDEa----avra~a~kma~~~~e~~V-----em~k~  116 (166)
T PRK10363         50 SLTEHQRQQMRDLMQQARHEQPPVNVSEMETMH----RLVTAENFDEN----AVRAQAEKMAQEQVARQV-----EMAKV  116 (166)
T ss_pred             CCCHHHHHHHHHHHHHHHhcccccCHHHHHHHH----HHHhcCCCCHH----HHHHHHHHHHHHHHHHHH-----HHHHH
Confidence            89999999999999888866554432 334443    23333333221    23333344422  22222     35577


Q ss_pred             HHHHHhcCCHHHHHHHHHHHHHHHHHHHHhccccc
Q 036441          320 MQQMYRVLTTRQAARALLALGEYFHRLRALSSLWA  354 (361)
Q Consensus       320 L~~l~~ILTp~QAA~fLlAl~e~~~rLR~Lsslw~  354 (361)
                      -++|..||||-|-+.|=--.-+....+|.++.+=.
T Consensus       117 ~nqmy~lLTPEQKaq~~~~~~~rm~~~~~~~~~q~  151 (166)
T PRK10363        117 RNQMYRLLTPEQQAVLNEKHQQRMEQLRDVTQWQK  151 (166)
T ss_pred             HHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHhcCc
Confidence            78999999999999996555556666676664433

>PRK12751 cpxP periplasmic stress adaptor protein CpxP; Reviewed

Probab=91.63  E-value=4.2  Score=37.20  Aligned_cols=100  Identities=23%  Similarity=0.272  Sum_probs=63.6

Q ss_pred             CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCchHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Q 036441          243 PLTEQQLIDVCNLRQSSQQAEDALQQGIDKLQQSLVQIITEEQLSSGIYQSQMVAAAEKLEALESFVNQADHLRQQTMQQ  322 (361)
Q Consensus       243 pLTeqQl~~I~~LqqstqqaEdaLsq~ma~LQqslad~~aa~~lg~~~~~~qm~~Am~kl~~Le~fl~qAD~LR~qTL~~  322 (361)
                      +||++|...|..+....+.......  .+ .-+.+-+.+.++++-+.    .+...+++...   .-..---.+.++..+
T Consensus        56 ~LTd~QR~qmr~im~~~r~~~~~~~--~~-~~~~m~~Li~Ad~FDea----Avra~~~kma~---~~~e~~v~~~~~~~q  125 (162)
T PRK12751         56 NLTEQQRQQMRDLMRQSHQSQPRLD--LE-DREAMHKLITADKFDEA----AVRAQAEKMSQ---NQIERHVEMAKVRNQ  125 (162)
T ss_pred             CCCHHHHHHHHHHHHHhhhcccchh--HH-HHHHHHHHHhcCCCCHH----HHHHHHHHHHH---HHHHHHHHHHHHHHH
Confidence            8999999999998877776532111  11 22333444444444332    23333344322   111222256788999


Q ss_pred             HHhcCCHHHHHHHHHHHHHHHHHHHHhccc
Q 036441          323 MYRVLTTRQAARALLALGEYFHRLRALSSL  352 (361)
Q Consensus       323 l~~ILTp~QAA~fLlAl~e~~~rLR~Lssl  352 (361)
                      ++.+|||-|-+.|=--..+...++|.++.+
T Consensus       126 my~lLTPEQra~l~~~~e~r~~~~~~~~~~  155 (162)
T PRK12751        126 MYNLLTPEQKEALNKKHQERIEKLQQKPAA  155 (162)
T ss_pred             HHHcCCHHHHHHHHHHHHHHHHHHHhcccc
Confidence            999999999999988888888888886643

>PF07813 LTXXQ: LTXXQ motif family protein; InterPro: IPR012899 This five residue motif is found in a number of bacterial proteins bearing similarity to the protein CpxP (P32158 from SWISSPROT)

Probab=91.62  E-value=1.2  Score=35.34  Aligned_cols=83  Identities=19%  Similarity=0.284  Sum_probs=45.2

Q ss_pred             CCCCCCcHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHhhhcccCCchHHHHHHHHHHHHHHHHHHHHHhHH
Q 036441          239 PQLEPLTEQQLIDVCNLRQSSQQAEDAL---QQGIDKLQQSLVQIITEEQLSSGIYQSQMVAAAEKLEALESFVNQADHL  315 (361)
Q Consensus       239 ~~LepLTeqQl~~I~~LqqstqqaEdaL---sq~ma~LQqslad~~aa~~lg~~~~~~qm~~Am~kl~~Le~fl~qAD~L  315 (361)
                      ..| +||++|...|..|....+..-..+   .+.+.++..           +.  +...-..++.+++.+...-.+.-..
T Consensus        11 ~~L-~LT~eQ~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~-----------~~--~~~~~~~~~~~~~~~~~~~~~~~~~   76 (100)
T PF07813_consen   11 EEL-NLTDEQKAKWRAIRQAMKAKMKPLKAMREQLRALRD-----------PS--FDEAAPEALAAMAEMMELRAEMMEE   76 (100)
T ss_dssp             TTS---THHHHHHHHHHHHHHCTTS------HHHHHHHHH-----------SS----HHHHHHHH--HHCHHHHHHHHHH
T ss_pred             hhC-CCCHHHHHHHHHHHHHHHHHHHhhcccHHHHHHhcc-----------cc--CChhHHHHHHHHHHHHHHHHHHHHH
Confidence            344 699999999999998888776666   222222222           00  0000111122223444444455556


Q ss_pred             HHHHHHHHHhcCCHHHHHHH
Q 036441          316 RQQTMQQMYRVLTTRQAARA  335 (361)
Q Consensus       316 R~qTL~~l~~ILTp~QAA~f  335 (361)
                      |..+...+..||||-|=+.|
T Consensus        77 ~~~~~~~~~~vLt~eQk~~~   96 (100)
T PF07813_consen   77 RAKAQHALYAVLTPEQKEKF   96 (100)
T ss_dssp             HHHHHHHHHTTS-HHHHHHH
T ss_pred             HHHHHHHHHhcCCHHHHHHH
Confidence            77888999999999998776

This is a periplasmic protein that aids in combating extracytoplasmic protein-mediated toxicity, and may also be involved in the response to alkaline pH []. Another member of this family, Spy (P77754 from SWISSPROT) is also a periplasmic protein that may be involved in the response to stress []. The homology between CpxP and Spy may indicate that these two proteins are functionally related []. The motif is found repeated twice in many members of this entry. ; GO: 0042597 periplasmic space; PDB: 3ITF_B 3QZC_B 3OEO_D 3O39_A.

>KOG4005 consensus Transcription factor XBP-1 [Transcription]

Probab=90.93  E-value=1  Score=43.80  Aligned_cols=45  Identities=38%  Similarity=0.443  Sum_probs=37.0

Q ss_pred             CChHHHHHHHhhHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 036441           74 PSEKTQRRLAQNREAARKSRLRKKAYVQQLESSRLKLAQLEQELDRAR  121 (361)
Q Consensus        74 ~~~k~~rrlaqnreaarksrlrkkayvq~le~sr~kl~qleqel~~~r  121 (361)
                      ..+|++||=-+||=||..+|=||||-...+|-   .+..|+.|-++.+
T Consensus        66 ~EEK~~RrKLKNRVAAQtaRDrKKaRm~eme~---~i~dL~een~~L~  110 (292)
T KOG4005|consen   66 WEEKVQRRKLKNRVAAQTARDRKKARMEEMEY---EIKDLTEENEILQ  110 (292)
T ss_pred             HHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHH---HHHHHHHHHHHHH
Confidence            46899999999999999999999999999988   5555655555443

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	361
1dh3_A	55	Transcription factor CREB; protein-DNA complex, tr	1e-07
1t2k_D	61	Cyclic-AMP-dependent transcription factor ATF-2; p	8e-07
1jnm_A	62	Proto-oncogene C-JUN; BZIP, protein-DNA complex, t	1e-06
2dgc_A	63	Protein (GCN4); basic domain, leucine zipper, DNA	8e-06
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	8e-06
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-04
2wt7_A	63	Proto-oncogene protein C-FOS; transcription, trans	3e-05
1ci6_A	63	Transcription factor ATF-4; BZIP; 2.60A {Homo sapi	5e-05
1hjb_A	87	Ccaat/enhancer binding protein beta; transcription	3e-04
1gd2_E	70	Transcription factor PAP1; basic leucine zipper, p	5e-04

>1dh3_A Transcription factor CREB; protein-DNA complex, transcription/DNA complex; HET: DNA; 3.00A {Mus musculus} SCOP: h.1.3.1 Length = 55

 Score = 46.6 bits (111), Expect = 1e-07
 Identities = 20/47 (42%), Positives = 30/47 (63%), Gaps = 3/47 (6%)

Query: 77  KTQRRLAQNREAARKSRLRKKAYVQQLESSRLKLAQLEQELDRARRQ 123
           K + RL +NREAAR+SR +KK YV+ LE+   ++A LE +      +
Sbjct: 1   KREVRLMKNREAARESRRKKKEYVKSLEN---RVAVLENQNKTLIEE 44

>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1 Length = 61

 Score = 45.0 bits (107), Expect = 8e-07
 Identities = 15/47 (31%), Positives = 25/47 (53%), Gaps = 3/47 (6%)

Query: 77  KTQRRLAQNREAARKSRLRKKAYVQQLESSRLKLAQLEQELDRARRQ 123
           K ++ L +NR AA +SR ++K +VQ LE    K   L     + + +
Sbjct: 1   KRRKFLERNRAAASRSRQKRKVWVQSLEK---KAEDLSSLNGQLQSE 44

>1jnm_A Proto-oncogene C-JUN; BZIP, protein-DNA complex, transcription/DNA complex; 2.20A {Homo sapiens} SCOP: h.1.3.1 PDB: 1fos_F 2h7h_A 1t2k_C 1a02_J* 1s9k_E 1jun_A Length = 62

 Score = 44.7 bits (106), Expect = 1e-06
 Identities = 17/51 (33%), Positives = 25/51 (49%), Gaps = 4/51 (7%)

Query: 77  KTQRRLAQNREAARKSRLRKKAYVQQLESSRLKL----AQLEQELDRARRQ 123
           K +R+  +NR AA KSR RK   + +LE     L    ++L    +  R Q
Sbjct: 1   KAERKRMRNRIAASKSRKRKLERIARLEEKVKTLKAQNSELASTANMLREQ 51

>2dgc_A Protein (GCN4); basic domain, leucine zipper, DNA binding, eukaryotic regulatory protein, transcription/DNA complex; HET: DNA; 2.20A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1dgc_A* 1ld4_E 1ysa_C* 3p8m_D Length = 63

 Score = 42.1 bits (99), Expect = 8e-06
 Identities = 16/51 (31%), Positives = 27/51 (52%), Gaps = 3/51 (5%)

Query: 73  KPSEKTQRRLAQNREAARKSRLRKKAYVQQLESSRLKLAQLEQELDRARRQ 123
           + S+    + A+N EAAR+SR RK   ++QLE    K+ +L  +      +
Sbjct: 5   ESSDPAALKRARNTEAARRSRARKLQRMKQLED---KVEELLSKNYHLENE 52

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 46.8 bits (110), Expect = 8e-06
 Identities = 37/230 (16%), Positives = 74/230 (32%), Gaps = 39/230 (16%)

Query: 152 EYSHWVEEQNR--QIYELRNALQKHITDIELRILVENGLN-HYNNLFRMKADAAKADVLS 208
           E  H +  ++       L   L     ++ ++  VE  L  +Y   F M     +    S
Sbjct: 50  EIDHIIMSKDAVSGTLRLFWTLLSKQEEM-VQKFVEEVLRINYK--FLMSPIKTEQRQPS 106

Query: 209 LISGMWRTSTERFFQWIGGFRPSELLNILMPQLEPLTEQQLIDVCNLRQSSQQAEDAL-- 266
           +++ M+    +R +     F      N+   +L+P  +        LRQ+  +   A   
Sbjct: 107 MMTRMYIEQRDRLYNDNQVFAK---YNV--SRLQPYLK--------LRQALLELRPAKNV 153

Query: 267 ----QQGIDKLQQSLV-----QIITEEQLSSGIY---QSQMVAAAEKLEALESFVNQADH 314
                 G  K    +          + ++   I+        +    LE L+  + Q D 
Sbjct: 154 LIDGVLGSGK--TWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDP 211

Query: 315 LRQQTMQQM----YRVLTTRQAARALLALGEYFHRLRALSSLWAAQHLES 360
                         R+ + +   R LL    Y + L  L ++  A+   +
Sbjct: 212 NWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNA 261

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 42.5 bits (99), Expect = 2e-04
 Identities = 56/422 (13%), Positives = 129/422 (30%), Gaps = 98/422 (23%)

Query: 5   SSQLATLRRMSIYEPFHQISMW--------GDTFHGDASPNTGSSTIV-------QVDTR 49
            +Q+     +S  +P+ ++                G     +G + +        +V  +
Sbjct: 122 DNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLG--SGKTWVALDVCLSYKVQCK 179

Query: 50  LDNQTEYLSHNSVEPSRSDQEANKPSEKTQRRLAQNREAARKSRLRKKAYVQQLESS--- 106
           +D +  +L+   ++   S +   +  +K   ++  N             +  + + S   
Sbjct: 180 MDFKIFWLN---LKNCNSPETVLEMLQKLLYQIDPN-------------WTSRSDHSSNI 223

Query: 107 RLKLAQLEQELDRARRQGIYTGS------TSDGSH---FGLSGNI-----NPGITAF--E 150
           +L++  ++ EL R  +   Y           +      F LS  I        +T F   
Sbjct: 224 KLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSA 283

Query: 151 MEYSHWVEEQNRQIYE-------LRNALQKHITDI--E------LRI-----LVENGLNH 190
              +H   + +            L   L     D+  E       R+      + +GL  
Sbjct: 284 ATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLAT 343

Query: 191 YNNLFRMKADAAKADVLSLISGMWRTSTERFFQWIGGFR-----PSELLNILMPQLEPLT 245
           ++N   +  D     + S ++ +      + F  +  F      P+ LL+++   +    
Sbjct: 344 WDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSD 403

Query: 246 EQQLIDVCNLRQSSQQAEDALQQGIDKLQQSL-VQIITEEQLSSGI---YQSQMVAAAEK 301
              +++  +     ++        I  +   L V++  E  L   I   Y       ++ 
Sbjct: 404 VMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDD 463

Query: 302 LEALE------SFVNQADHLRQQTMQQMYRVLTTRQAARALLALGEYF--HRLRALSSLW 353
           L          S +    HL+     +   +          L     F   ++R  S+ W
Sbjct: 464 LIPPYLDQYFYSHI--GHHLKNIEHPERMTLFR-----MVFLDFR--FLEQKIRHDSTAW 514

Query: 354 AA 355
            A
Sbjct: 515 NA 516

>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D Length = 63

 Score = 40.5 bits (95), Expect = 3e-05
 Identities = 12/42 (28%), Positives = 21/42 (50%)

Query: 76  EKTQRRLAQNREAARKSRLRKKAYVQQLESSRLKLAQLEQEL 117
           EK + R  +N+ AA K R R++     L++   +L   +  L
Sbjct: 1   EKRRIRRERNKMAAAKCRNRRRELTDTLQAETDQLEDEKSAL 42

>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1 Length = 63

 Score = 39.6 bits (93), Expect = 5e-05
 Identities = 11/41 (26%), Positives = 22/41 (53%)

Query: 77  KTQRRLAQNREAARKSRLRKKAYVQQLESSRLKLAQLEQEL 117
           K  +++ QN+ AA + R +K+A  + L     +L +  + L
Sbjct: 2   KKLKKMEQNKTAATRYRQKKRAEQEALTGECKELEKKNEAL 42

>1hjb_A Ccaat/enhancer binding protein beta; transcription/DNA, protein-DNA complex; HET: DNA; 3.0A {Homo sapiens} SCOP: h.1.3.1 Length = 87

 Score = 38.0 bits (88), Expect = 3e-04
 Identities = 15/59 (25%), Positives = 32/59 (54%), Gaps = 3/59 (5%)

Query: 65  SRSDQEANKPSEKTQRRLAQNREAARKSRLRKKAYVQQLESSRLKLAQLEQELDRARRQ 123
           S++ +  +K S++ + R  +N  A RKSR + K    + +    K+ +L  E +R +++
Sbjct: 3   SKAKKTVDKHSDEYKIRRERNNIAVRKSRDKAKMRNLETQH---KVLELTAENERLQKK 58

>1gd2_E Transcription factor PAP1; basic leucine zipper, protein-DNA complex, transcription/DNA complex; HET: DNA; 2.00A {Schizosaccharomyces pombe} SCOP: h.1.3.1 Length = 70

 Score = 37.3 bits (86), Expect = 5e-04
 Identities = 15/52 (28%), Positives = 27/52 (51%), Gaps = 3/52 (5%)

Query: 72  NKPSEKTQRRLAQNREAARKSRLRKKAYVQQLESSRLKLAQLEQELDRARRQ 123
           N   E + +R AQNR A R  R RK+ +++ LE+   ++  L++       +
Sbjct: 3   NSDQEPSSKRKAQNRAAQRAFRKRKEDHLKALET---QVVTLKELHSSTTLE 51

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	361
1dh3_A	55	Transcription factor CREB; protein-DNA complex, tr	99.03
2dgc_A	63	Protein (GCN4); basic domain, leucine zipper, DNA	98.56
1jnm_A	62	Proto-oncogene C-JUN; BZIP, protein-DNA complex, t	98.34
2wt7_A	63	Proto-oncogene protein C-FOS; transcription, trans	98.29
1t2k_D	61	Cyclic-AMP-dependent transcription factor ATF-2; p	98.24
1gd2_E	70	Transcription factor PAP1; basic leucine zipper, p	97.98
2y39_A	118	Nickel and cobalt resistance protein CNRR; metal b	97.4
1ci6_A	63	Transcription factor ATF-4; BZIP; 2.60A {Homo sapi	97.2
3a5t_A	107	Transcription factor MAFG; protein-DNA complex, BZ	96.27
1gu4_A	78	CAAT/enhancer binding protein beta; transcription/	95.65
1hjb_A	87	Ccaat/enhancer binding protein beta; transcription	94.94
3itf_A	145	Periplasmic adaptor protein CPXP; CPXR, CPXA, cpxr	94.59
2wt7_B	90	Transcription factor MAFB; transcription, transcri	91.34
3lay_A	175	Zinc resistance-associated protein; salmonella typ	85.22
3oeo_A	138	Spheroplast protein Y; LTXXQ, extracytoplasmic str	85.11
1skn_P	92	DNA-binding domain of SKN-1; complex (transcriptio	81.36

>1dh3_A Transcription factor CREB; protein-DNA complex, transcription/DNA complex; HET: DNA; 3.00A {Mus musculus} SCOP: h.1.3.1

Probab=99.03  E-value=3.1e-10  Score=84.47  Aligned_cols=44  Identities=45%  Similarity=0.617  Sum_probs=40.0

Q ss_pred             HHHHHHHhhHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 036441           77 KTQRRLAQNREAARKSRLRKKAYVQQLESSRLKLAQLEQELDRARRQ  123 (361)
Q Consensus        77 k~~rrlaqnreaarksrlrkkayvq~le~sr~kl~qleqel~~~r~q  123 (361)
                      |-.+|+..|||+|+.||.|||+||+.||.   ++.+|+.|-...+.+
T Consensus         1 kr~rR~~~NResA~rSR~RKk~~~~~LE~---~v~~L~~eN~~L~~~   44 (55)
T 1dh3_A            1 KREVRLMKNREAARESRRKKKEYVKSLEN---RVAVLENQNKTLIEE   44 (55)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHH
T ss_pred             ChHHHHHhhHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHH
Confidence            35799999999999999999999999999   899999998877765

>2dgc_A Protein (GCN4); basic domain, leucine zipper, DNA binding, eukaryotic regulatory protein, transcription/DNA complex; HET: DNA; 2.20A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1dgc_A* 1ld4_E 1ysa_C* 3p8m_D

Probab=98.56  E-value=7.8e-08  Score=73.29  Aligned_cols=43  Identities=37%  Similarity=0.421  Sum_probs=31.5

Q ss_pred             CChHHHHHHHhhHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHH
Q 036441           74 PSEKTQRRLAQNREAARKSRLRKKAYVQQLESSRLKLAQLEQELDR  119 (361)
Q Consensus        74 ~~~k~~rrlaqnreaarksrlrkkayvq~le~sr~kl~qleqel~~  119 (361)
                      ++|+..+|-++||||||+||.||++|+..||.   ++.+|+.|-..
T Consensus         6 ~~d~~~~KR~rNreAArrsR~RK~~~~~~Le~---~v~~L~~eN~~   48 (63)
T 2dgc_A            6 SSDPAALKRARNTEAARRSRARKLQRMKQLED---KVEELLSKNYH   48 (63)
T ss_dssp             -----CHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHH
T ss_pred             cccHHHHHHHHhHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHH
Confidence            35566677788999999999999999999999   66665555443

>1jnm_A Proto-oncogene C-JUN; BZIP, protein-DNA complex, transcription/DNA complex; 2.20A {Homo sapiens} SCOP: h.1.3.1 PDB: 1fos_F 2h7h_A 1t2k_C 1a02_J* 1s9k_E 1jun_A

Probab=98.34  E-value=7e-07  Score=67.41  Aligned_cols=40  Identities=38%  Similarity=0.462  Sum_probs=33.3

Q ss_pred             HHHHHHHhhHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHH
Q 036441           77 KTQRRLAQNREAARKSRLRKKAYVQQLESSRLKLAQLEQELDR  119 (361)
Q Consensus        77 k~~rrlaqnreaarksrlrkkayvq~le~sr~kl~qleqel~~  119 (361)
                      |..||...||+||+|||.|||.|++.||.   ++..|+.+-..
T Consensus         1 K~errr~rNr~AA~k~R~rKk~~~~~Le~---~v~~L~~~n~~   40 (62)
T 1jnm_A            1 KAERKRMRNRIAASKSRKRKLERIARLEE---KVKTLKAQNSE   40 (62)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHH
T ss_pred             ChHHHHHHhHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHH
Confidence            45789999999999999999999999999   66666555443

>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D

Probab=98.29  E-value=1.3e-06  Score=66.21  Aligned_cols=40  Identities=33%  Similarity=0.416  Sum_probs=33.9

Q ss_pred             HHHHHHHhhHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHH
Q 036441           77 KTQRRLAQNREAARKSRLRKKAYVQQLESSRLKLAQLEQELDR  119 (361)
Q Consensus        77 k~~rrlaqnreaarksrlrkkayvq~le~sr~kl~qleqel~~  119 (361)
                      |-.+|+-.||+||+|||.|||.|++.||.   ++.+|+.+-..
T Consensus         2 kr~rrrerNR~AA~rcR~rKk~~~~~Le~---~v~~L~~~n~~   41 (63)
T 2wt7_A            2 KRRIRRERNKMAAAKCRNRRRELTDTLQA---ETDQLEDEKSA   41 (63)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHH
T ss_pred             hHHHHHHHhHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHH
Confidence            56899999999999999999999999999   66666655443

>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1

Probab=98.24  E-value=1.5e-06  Score=65.28  Aligned_cols=38  Identities=37%  Similarity=0.490  Sum_probs=32.0

Q ss_pred             HHHHHHhhHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHH
Q 036441           78 TQRRLAQNREAARKSRLRKKAYVQQLESSRLKLAQLEQELD  118 (361)
Q Consensus        78 ~~rrlaqnreaarksrlrkkayvq~le~sr~kl~qleqel~  118 (361)
                      -.+|+..||+||.|||.|||.|++.||.   ++..|+.+-.
T Consensus         2 R~~r~erNr~AA~k~R~rKk~~~~~Le~---~~~~L~~~n~   39 (61)
T 1t2k_D            2 RRKFLERNRAAASRSRQKRKVWVQSLEK---KAEDLSSLNG   39 (61)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHH
T ss_pred             HHHHHHHhHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHH
Confidence            4689999999999999999999999999   6655555543

>1gd2_E Transcription factor PAP1; basic leucine zipper, protein-DNA complex, transcription/DNA complex; HET: DNA; 2.00A {Schizosaccharomyces pombe} SCOP: h.1.3.1

Probab=97.98  E-value=6.8e-06  Score=63.96  Aligned_cols=39  Identities=33%  Similarity=0.442  Sum_probs=34.5

Q ss_pred             HHHHHHhhHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHH
Q 036441           78 TQRRLAQNREAARKSRLRKKAYVQQLESSRLKLAQLEQELDR  119 (361)
Q Consensus        78 ~~rrlaqnreaarksrlrkkayvq~le~sr~kl~qleqel~~  119 (361)
                      ..+|-||||+|+|-.|-||++||..||.   ++.+||.+.+.
T Consensus         9 ~~kR~~qNR~AQRafReRK~~~i~~LE~---~v~~le~~~~~   47 (70)
T 1gd2_E            9 SSKRKAQNRAAQRAFRKRKEDHLKALET---QVVTLKELHSS   47 (70)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHH
T ss_pred             HhHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHH
Confidence            4688899999999999999999999999   88888776553

>2y39_A Nickel and cobalt resistance protein CNRR; metal binding protein; 1.41A {Cupriavidus metallidurans} PDB: 2y3b_A 2y3d_A 2y3g_A* 2y3h_A 3epv_A*

Probab=97.40  E-value=0.002  Score=54.69  Aligned_cols=96  Identities=17%  Similarity=0.169  Sum_probs=75.4

Q ss_pred             hhcCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCchHHHHHHHHHHHHHHHHHHHHHhHH
Q 036441          236 ILMPQLEPLTEQQLIDVCNLRQSSQQAEDALQQGIDKLQQSLVQIITEEQLSSGIYQSQMVAAAEKLEALESFVNQADHL  315 (361)
Q Consensus       236 LL~~~LepLTeqQl~~I~~LqqstqqaEdaLsq~ma~LQqslad~~aa~~lg~~~~~~qm~~Am~kl~~Le~fl~qAD~L  315 (361)
                      +|...| +||++|-..|..+...-.....+|.++|......|++.+.+    +..|+..+..|++.+-.      ..-.|
T Consensus        14 ~vh~~L-~Lt~~Q~~~leaie~~fa~~r~~le~emRaan~~La~ai~~----~~~~~p~V~aaid~~h~------~mG~L   82 (118)
T 2y39_A           14 ILHEAV-PLDANEREILELKEDAFAQRRREIETRLRAANGKLADAIAK----NPAWSPEVEAATQEVER------AAGDL   82 (118)
T ss_dssp             HHHHHS-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----CCSCCHHHHHHHHHHHH------HHHHH
T ss_pred             HHHHhc-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh----ccccCHHHHHHHHHHHH------HHHHH
Confidence            444555 89999999999999999999999999999999999998743    22366678777755433      33347


Q ss_pred             HHHH---HHHHHhcCCHHHHHHHHHHHHHH
Q 036441          316 RQQT---MQQMYRVLTTRQAARALLALGEY  342 (361)
Q Consensus       316 R~qT---L~~l~~ILTp~QAA~fLlAl~e~  342 (361)
                      +..|   +-.|..||||-|+..|=-.+.+-
T Consensus        83 QkeTi~HvfeMR~VLtPeQ~~~fd~~vv~a  112 (118)
T 2y39_A           83 QRATLVHVFEMRAGLKPEHRPAYDRVLIDA  112 (118)
T ss_dssp             HHHHHHHHHHHHHHSCGGGHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence            8888   55678999999999997666553

>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1

Probab=97.20  E-value=0.00039  Score=52.69  Aligned_cols=39  Identities=28%  Similarity=0.438  Sum_probs=28.2

Q ss_pred             HHHHHHHhhHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHH
Q 036441           77 KTQRRLAQNREAARKSRLRKKAYVQQLESSRLKLAQLEQELD  118 (361)
Q Consensus        77 k~~rrlaqnreaarksrlrkkayvq~le~sr~kl~qleqel~  118 (361)
                      |-.|+.-+||.||+++|.|||.+++.||.   ++.+|+++-.
T Consensus         2 k~~rKr~rNr~AA~R~R~KKk~~~~~le~---~~~~L~~~N~   40 (63)
T 1ci6_A            2 KKLKKMEQNKTAATRYRQKKRAEQEALTG---ECKELEKKNE   40 (63)
T ss_dssp             ------CCHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHH
T ss_pred             chHhHHHHhHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHH
Confidence            45678889999999999999999999999   6666655544

>3a5t_A Transcription factor MAFG; protein-DNA complex, BZIP factor, acetylation, DNA-binding, isopeptide bond, nucleus; 2.80A {Mus musculus}

Probab=96.27  E-value=0.0012  Score=55.10  Aligned_cols=45  Identities=29%  Similarity=0.436  Sum_probs=37.8

Q ss_pred             hHHHHHHHhhHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 036441           76 EKTQRRLAQNREAARKSRLRKKAYVQQLESSRLKLAQLEQELDRARRQ  123 (361)
Q Consensus        76 ~k~~rrlaqnreaarksrlrkkayvq~le~sr~kl~qleqel~~~r~q  123 (361)
                      -|-.||--.||++|++||.||.+.+..||.   .+.+|.+|+++.++.
T Consensus        36 lK~~RR~lKNR~yAq~CR~rk~~~~~~LE~---e~~~L~~e~e~L~~E   80 (107)
T 3a5t_A           36 LKQRRRTLKNRGYAASCRVKRVTQKEELEK---QKAELQQEVEKLASE   80 (107)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHTTTSSTTTTTTST
T ss_pred             HHHHHHhhhhHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHH
Confidence            478899999999999999999999999998   677777766655443

>1gu4_A CAAT/enhancer binding protein beta; transcription/DNA, protein-DNA complex, transcription factor, BZIP, C/EBP; 1.80A {Homo sapiens} SCOP: h.1.3.1 PDB: 1gtw_A 1gu5_A 1h88_A 1h8a_A 1io4_A 2e43_A* 2e42_A* 1h89_A 1ci6_B 1nwq_A

Probab=95.65  E-value=0.035  Score=43.84  Aligned_cols=34  Identities=29%  Similarity=0.270  Sum_probs=29.0

Q ss_pred             CCCChHHHHHHHhhHHHHHHhhHhHHHHHHHHHH
Q 036441           72 NKPSEKTQRRLAQNREAARKSRLRKKAYVQQLES  105 (361)
Q Consensus        72 ~~~~~k~~rrlaqnreaarksrlrkkayvq~le~  105 (361)
                      .+.|++-..|-..|.+||+|||-.+|.-.+.++.
T Consensus        10 dk~d~~Y~~rR~rNN~AakrSR~krk~r~~e~~~   43 (78)
T 1gu4_A           10 DKHSDEYKIRRERNNIAVRKSRDKAKMRNLETQH   43 (78)
T ss_dssp             CTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ccCcHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence            3456778888899999999999999999888865

>1hjb_A Ccaat/enhancer binding protein beta; transcription/DNA, protein-DNA complex; HET: DNA; 3.0A {Homo sapiens} SCOP: h.1.3.1

Probab=94.94  E-value=0.076  Score=42.70  Aligned_cols=33  Identities=30%  Similarity=0.256  Sum_probs=27.5

Q ss_pred             CCChHHHHHHHhhHHHHHHhhHhHHHHHHHHHH
Q 036441           73 KPSEKTQRRLAQNREAARKSRLRKKAYVQQLES  105 (361)
Q Consensus        73 ~~~~k~~rrlaqnreaarksrlrkkayvq~le~  105 (361)
                      +-|++-..|-..|.+||||||-.+|.=.+.++.
T Consensus        11 k~d~~Y~~rR~rNN~AarrSR~krk~r~~e~~~   43 (87)
T 1hjb_A           11 KHSDEYKIRRERNNIAVRKSRDKAKMRNLETQH   43 (87)
T ss_dssp             TTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cccHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence            456778888899999999999999987777754

>3itf_A Periplasmic adaptor protein CPXP; CPXR, CPXA, cpxrap, CPX-pathway, envelope stress, transduction; HET: MSE; 1.45A {Escherichia coli str} PDB: 3qzc_A

Probab=94.59  E-value=0.15  Score=44.45  Aligned_cols=99  Identities=20%  Similarity=0.276  Sum_probs=60.5

Q ss_pred             CCCCCcHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHhhhcccCCchHHHHHHHHHHHHHHHHHHHHHhHHHHH
Q 036441          240 QLEPLTEQQLIDVCNLRQSSQQAEDALQQ-GIDKLQQSLVQIITEEQLSSGIYQSQMVAAAEKLEALESFVNQADHLRQQ  318 (361)
Q Consensus       240 ~LepLTeqQl~~I~~LqqstqqaEdaLsq-~ma~LQqslad~~aa~~lg~~~~~~qm~~Am~kl~~Le~fl~qAD~LR~q  318 (361)
                      .| +||++|..+|..|....+.+...+.. .++    .+-+.+.++.+-.    ..+..   .++.+...-.+.--.|.+
T Consensus        43 ~L-~LTdeQkqqir~L~~~~r~~~~~~~~~~r~----~l~~Li~ad~fDe----aa~ra---l~~~~~~~~~e~~v~r~k  110 (145)
T 3itf_A           43 GI-SLTEHQRQQMRDLMQQARHEQPPVNVSELE----TMHRLVTAENFDE----NAVRA---QAEKMANEQIARQVEMAK  110 (145)
T ss_dssp             TC-CCCHHHHHHHHHHHHHHHHHSCCCCHHHHH----HHHHHHTCSSCCH----HHHHH---HHHHHHHHHHHHHHHHHH
T ss_pred             cC-CCCHHHHHHHHHHHHHHHHHhhhccHHHHH----HHHHHHccCCCCH----HHHHH---HHHHHHHHHHHHHHHHHH
Confidence            44 79999999999999888876554431 222    2323322111111    11222   223333334444446788


Q ss_pred             HHHHHHhcCCHHHHHHHHHHHHHHHHHHHHhc
Q 036441          319 TMQQMYRVLTTRQAARALLALGEYFHRLRALS  350 (361)
Q Consensus       319 TL~~l~~ILTp~QAA~fLlAl~e~~~rLR~Ls  350 (361)
                      +-.+|..||||-|-+.|---..+-...++.++
T Consensus       111 ~~~qiy~vLTPEQk~ql~e~~~~r~~~~~~~~  142 (145)
T 3itf_A          111 VRNQMYRLLTPEQQAVLNEKHQQRMEQLRDVT  142 (145)
T ss_dssp             HHHHHHTTSCHHHHHHHHHHHHHHHHHTTCGG
T ss_pred             HHHHHHhhCCHHHHHHHHHHHHHHHHHHHHhh
Confidence            88999999999999998877666655555544

>2wt7_B Transcription factor MAFB; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 2wty_A* 1k1v_A

Probab=91.34  E-value=0.51  Score=38.20  Aligned_cols=44  Identities=27%  Similarity=0.388  Sum_probs=35.0

Q ss_pred             ChHHHHHHHhhHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 036441           75 SEKTQRRLAQNREAARKSRLRKKAYVQQLESSRLKLAQLEQELDRAR  121 (361)
Q Consensus        75 ~~k~~rrlaqnreaarksrlrkkayvq~le~sr~kl~qleqel~~~r  121 (361)
                      .-|-.||=-+||-+|..||-||-.-+..||.   ...+|..|++..+
T Consensus        25 ~lKq~RRtlKNRgyAq~CR~Kr~~q~~~LE~---e~~~L~~e~~~L~   68 (90)
T 2wt7_B           25 RLKQKRRTLKNRGYAQSCRYKRVQQKHHLEN---EKTQLIQQVEQLK   68 (90)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHH
T ss_pred             HHHHHHHhhhhhHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHH
Confidence            4577899999999999999999999999998   5555555555444

>3lay_A Zinc resistance-associated protein; salmonella typhimurium L structural genomics, center for structural genomics of INFE diseases; 2.70A {Salmonella enterica subsp}

Probab=85.22  E-value=6.3  Score=35.11  Aligned_cols=76  Identities=20%  Similarity=0.234  Sum_probs=49.7

Q ss_pred             CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCchHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Q 036441          242 EPLTEQQLIDVCNLRQSSQQAEDALQQGIDKLQQSLVQIITEEQLSSGIYQSQMVAAAEKLEALESFVNQADHLRQQTMQ  321 (361)
Q Consensus       242 epLTeqQl~~I~~LqqstqqaEdaLsq~ma~LQqslad~~aa~~lg~~~~~~qm~~Am~kl~~Le~fl~qAD~LR~qTL~  321 (361)
                      -+||++|..+|..|.++-+..-.+|.+.|...++.+-+.+.++.+-.    ..+.....++..|..   +-...|.+.-.
T Consensus        66 LnLT~EQq~ql~~I~~e~r~~~~~Lr~ql~akr~EL~aL~~a~~~De----akI~aL~~Ei~~Lr~---qL~~~R~k~~~  138 (175)
T 3lay_A           66 SPLTTEQQATAQKIYDDYYTQTSALRQQLISKRYEYNALLTASSPDT----AKINAVAKEMESLGQ---KLDEQRVKRDV  138 (175)
T ss_dssp             --CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSSCCH----HHHHHHHHHHHHHHH---HHHHHHHHHHH
T ss_pred             ccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCH----HHHHHHHHHHHHHHH---HHHHHHHHHHH
Confidence            37999999999999999999999999999999988877764322221    223322233333333   33445666655


Q ss_pred             HHH
Q 036441          322 QMY  324 (361)
Q Consensus       322 ~l~  324 (361)
                      +|.
T Consensus       139 em~  141 (175)
T 3lay_A          139 AMA  141 (175)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            554

>3oeo_A Spheroplast protein Y; LTXXQ, extracytoplasmic stress response-related, signaling P; 2.70A {Escherichia coli}

Probab=85.11  E-value=0.25  Score=42.35  Aligned_cols=99  Identities=15%  Similarity=0.175  Sum_probs=53.5

Q ss_pred             cCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCchHHHHHHHHHHHHHHHHHHHHHhHHHH
Q 036441          238 MPQLEPLTEQQLIDVCNLRQSSQQAEDALQQGIDKLQQSLVQIITEEQLSSGIYQSQMVAAAEKLEALESFVNQADHLRQ  317 (361)
Q Consensus       238 ~~~LepLTeqQl~~I~~LqqstqqaEdaLsq~ma~LQqslad~~aa~~lg~~~~~~qm~~Am~kl~~Le~fl~qAD~LR~  317 (361)
                      ...| +||++|...|..|.+..+..-..   .+....+.+.+.+.++.+-.    ..+...+++   +...-.+.--.|.
T Consensus        29 ~~~L-~LT~eQ~~qir~i~~~~r~~~~~---~~~~~r~~l~~Li~a~~fDe----aav~al~~~---~~~~~~e~~~~~~   97 (138)
T 3oeo_A           29 FKDL-NLTDAQKQQIREIMKGQRDQMKR---PPLEERRAMHDIITSDTFDK----VKAEAQIAK---MEEQRKANMLAHM   97 (138)
T ss_dssp             -CCS-CCCTTHHHHHHHHHHHHSSSSCC---CCTTHHHHHHHHHTCSSCCH----HHHHHHHGG---GSHHHHHHHHHHH
T ss_pred             HhcC-CCCHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHhccCCCCH----HHHHHHHHH---HHHHHHHHHHHHH
Confidence            3455 79999999999998777654221   11122233333332221111    122222222   2333334444678


Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHHHHHHHHH
Q 036441          318 QTMQQMYRVLTTRQAARALLALGEYFHRLR  347 (361)
Q Consensus       318 qTL~~l~~ILTp~QAA~fLlAl~e~~~rLR  347 (361)
                      ++..+|..||||-|-+.|---+.+-..+++
T Consensus        98 ~~~~~~~~vLTPEQr~q~~~~~~kr~~~~~  127 (138)
T 3oeo_A           98 ETQNKIYNILTPEQKKQFNANFEKRLTERP  127 (138)
T ss_dssp             HHHHHHHTTSCHHHHHHHHHHTC-------
T ss_pred             HHHHHHHHhCCHHHHHHHHHHHHHHHHHhh
Confidence            899999999999999998877666554444

>1skn_P DNA-binding domain of SKN-1; complex (transcription factor/DNA), transcription/DNA complex; HET: DNA LDA; 2.50A {Caenorhabditis elegans} SCOP: a.37.1.1

Probab=81.36  E-value=0.72  Score=37.36  Aligned_cols=29  Identities=28%  Similarity=0.387  Sum_probs=23.3

Q ss_pred             hHHHHHHHhhHHHHHHhhHhHHHHHHHHH
Q 036441           76 EKTQRRLAQNREAARKSRLRKKAYVQQLE  104 (361)
Q Consensus        76 ~k~~rrlaqnreaarksrlrkkayvq~le  104 (361)
                      .+-.||=..||.||++||.||..-+..||
T Consensus        61 ir~~RRR~KNr~AA~~CRkrK~~~~d~l~   89 (92)
T 1skn_P           61 IRKIRRRGKNKVAARTCRQRRTDRHDKMS   89 (92)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHTTTC-
T ss_pred             HHHHHHHHhhHHHHHHHHHHHHHHHHhhh
Confidence            46678889999999999999987665554

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00