Citrus Sinensis ID: 036449

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------
Protein Sequence
MSASRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQQNVKAVFDAAIRVVLQPPKTKKKKNKAQKACSIL
Secondary Structure (PSIPRED)
cccccEEEEEEEcccccccEEEEEHHcccccccccccccccccEEEEEEccEEEEEEcEEcccccccccccccccccccEEEEEEEcccccHHHHHccccHHHHHHccccccEEEEEEcccccccHHHHHHccccccccHHHHHHHHHHHcccEEEEccHHccccHHHHHHHHHHHHcccccccccccccccccEEc
Secondary Structure Prediction (SSPRO)
cccccEEEEEEEEcccccHHHHHHHHHHcccccccccccEEEEEEEEEEccEEEEEEEEEEcccHHHcccHHHHcccccEEEEEEEcccHHHHHHHHHcHHHHHHHHcccccEEEEEEcHHHcccHHHHHHccccccccHHHHHHHHHHccccEEEEccccccccHHHHHHHHHHHHccccccccccccccccEEEc
Coil and Loop (DISEMBL)
msasrfikcvtvgdgavgkTCLLISytsntfptdyvptvfdnfsanvvvngstvnlglwdtagqedynrlrplsyrgaDVFILAFSLISKASYENVSKkwipelkhyapgvpiilvgtkldlrddkqffidhpgavpistaQGEELRKligapayiecssKTQQNVKAVFDAAIRVvlqppktkkkknKAQKACSIL
Flexible Loop (DISEMBL)
msasrfikcvtvgdgavgKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQQNVKAVFDAAIRvvlqppktkkkknkaqkacsil
Low Complexity Region (SEG)
MSASRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQQNVKAVFDAAIRVVLqppktkkkknkaqkaCSIL
Disordered region (IsUnstruct)
*****FIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQQNVKAVFDAAIRVVL*******************
Disordered Region (DISOPRED)
****RFI*CVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQQNVKAVFDAAIRVV*************QKACSIL
Disordered Region (DISEMBL)
MSASRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQQNVKAVFDAAIRVVLQPP****************
Disordered Region (DISPRO)
***SRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQQNVKAVFDAAIRVVLQPPKT**************
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiihhhhhhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MSASRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQQNVKAVFDAAIRVVLQPPKTKKKKNKAQKACSIL
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	197	2.2.26 [Sep-21-2011]
O04369	197	Rac-like GTP-binding prot	N/A	no	1.0	1.0	0.934	1e-101
Q39435	197	Rac-like GTP-binding prot	N/A	no	1.0	1.0	0.974	1e-101
Q35638	197	Rac-like GTP-binding prot	N/A	no	1.0	1.0	0.969	1e-101
Q38902	197	Rac-like GTP-binding prot	yes	no	1.0	1.0	0.959	1e-100
P92978	197	Rac-like GTP-binding prot	yes	no	1.0	1.0	0.959	1e-100
Q6EP31	197	Rac-like GTP-binding prot	yes	no	1.0	1.0	0.939	1e-99
Q9SBJ6	197	Rac-like GTP-binding prot	yes	no	1.0	1.0	0.954	1e-99
Q38912	198	Rac-like GTP-binding prot	no	no	1.0	0.994	0.904	2e-99
Q6Z7L8	197	Rac-like GTP-binding prot	yes	no	1.0	1.0	0.842	9e-99
Q6ZHA3	197	Rac-like GTP-binding prot	no	no	1.0	1.0	0.913	5e-98

>sp|O04369|RAC1_LOTJA Rac-like GTP-binding protein RAC1 OS=Lotus japonicus GN=RAC1 PE=2 SV=1

 Score =  368 bits (944), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 184/197 (93%), Positives = 192/197 (97%)

Query: 1   MSASRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWD 60
           MSASRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVV+GSTVNLGLWD
Sbjct: 1   MSASRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWD 60

Query: 61  TAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKL 120
           TAGQEDYNRLRPLSYRGADVFILAFSLISKASYEN++KKWIPEL+HYAPGVPIILVGTKL
Sbjct: 61  TAGQEDYNRLRPLSYRGADVFILAFSLISKASYENIAKKWIPELRHYAPGVPIILVGTKL 120

Query: 121 DLRDDKQFFIDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQQNVKAVFDAAIRVVLQP 180
           DLRDDK F  DHPGAVPI+TAQGEELRKLIGAPAYIECSSKTQQNVKAVFDAAI+VVLQP
Sbjct: 121 DLRDDKHFLADHPGAVPITTAQGEELRKLIGAPAYIECSSKTQQNVKAVFDAAIKVVLQP 180

Query: 181 PKTKKKKNKAQKACSIL 197
           PK KKKK +AQK+CSIL
Sbjct: 181 PKQKKKKREAQKSCSIL 197

Inactive GDP-bound Rho GTPases reside in the cytosol, are found in a complex with Rho GDP-dissociation inhibitors (Rho GDIs), and are released from the GDI protein in order to translocate to membranes upon activation.
Lotus japonicus (taxid: 34305)

>sp|Q39435|RAC1_BETVU Rac-like GTP-binding protein RHO1 OS=Beta vulgaris GN=RHO1 PE=2 SV=1

 Score =  367 bits (943), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 192/197 (97%), Positives = 197/197 (100%)

Query: 1   MSASRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWD 60
           MSASRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNG+TVNLGLWD
Sbjct: 1   MSASRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGATVNLGLWD 60

Query: 61  TAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKL 120
           TAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPI+LVGTKL
Sbjct: 61  TAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIVLVGTKL 120

Query: 121 DLRDDKQFFIDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQQNVKAVFDAAIRVVLQP 180
           DLRDDKQFFIDHPGAVPI+TAQGEELRKLIGAPAYIECSSKTQQNVKAVFDAAI+VVLQP
Sbjct: 121 DLRDDKQFFIDHPGAVPITTAQGEELRKLIGAPAYIECSSKTQQNVKAVFDAAIKVVLQP 180

Query: 181 PKTKKKKNKAQKACSIL 197
           PKTKKKK+KAQKACSIL
Sbjct: 181 PKTKKKKSKAQKACSIL 197

Inactive GDP-bound Rho GTPases reside in the cytosol, are found in a complex with Rho GDP-dissociation inhibitors (Rho GDIs), and are released from the GDI protein in order to translocate to membranes upon activation.

Beta vulgaris (taxid: 161934)

>sp|Q35638|RHO1_PEA Rac-like GTP-binding protein RHO1 OS=Pisum sativum GN=RHO1 PE=2 SV=1

 Score =  367 bits (941), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 191/197 (96%), Positives = 195/197 (98%)

Query: 1   MSASRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWD 60
           MSASRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWD
Sbjct: 1   MSASRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWD 60

Query: 61  TAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKL 120
           TAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKL
Sbjct: 61  TAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKL 120

Query: 121 DLRDDKQFFIDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQQNVKAVFDAAIRVVLQP 180
           DLRDDKQFF+DHPGAVPI+TAQGEELRKLI APAYIECSSK+QQNVKAVFDAAIRVVLQP
Sbjct: 121 DLRDDKQFFVDHPGAVPITTAQGEELRKLINAPAYIECSSKSQQNVKAVFDAAIRVVLQP 180

Query: 181 PKTKKKKNKAQKACSIL 197
           PK KKKK+KAQKACSIL
Sbjct: 181 PKQKKKKSKAQKACSIL 197

Inactive GDP-bound Rho GTPases reside in the cytosol, are found in a complex with Rho GDP-dissociation inhibitors (Rho GDIs), and are released from the GDI protein in order to translocate to membranes upon activation (By similarity). May be involved in cell polarity control during the actin-dependent tip growth of pollen tubes.

Pisum sativum (taxid: 3888)

>sp|Q38902|RAC1_ARATH Rac-like GTP-binding protein ARAC1 OS=Arabidopsis thaliana GN=ARAC1 PE=2 SV=1

 Score =  364 bits (935), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 189/197 (95%), Positives = 195/197 (98%)

Query: 1   MSASRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWD 60
           MSASRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNG+TVNLGLWD
Sbjct: 1   MSASRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGATVNLGLWD 60

Query: 61  TAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKL 120
           TAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPI+LVGTKL
Sbjct: 61  TAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIVLVGTKL 120

Query: 121 DLRDDKQFFIDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQQNVKAVFDAAIRVVLQP 180
           DLRDDKQFFIDHPGAVPI+TAQGEEL+KLIGAPAYIECSSKTQ+NVK VFDAAIRVVLQP
Sbjct: 121 DLRDDKQFFIDHPGAVPITTAQGEELKKLIGAPAYIECSSKTQENVKGVFDAAIRVVLQP 180

Query: 181 PKTKKKKNKAQKACSIL 197
           PK KKKK+KAQKACSIL
Sbjct: 181 PKQKKKKSKAQKACSIL 197

Inactive GDP-bound Rho GTPases reside in the cytosol, are found in a complex with Rho GDP-dissociation inhibitors (Rho GDIs), and are released from the GDI protein in order to translocate to membranes upon activation.

Arabidopsis thaliana (taxid: 3702)

>sp|P92978|RAC11_ARATH Rac-like GTP-binding protein ARAC11 OS=Arabidopsis thaliana GN=ARAC11 PE=1 SV=2

 Score =  364 bits (935), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 189/197 (95%), Positives = 194/197 (98%)

Query: 1   MSASRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWD 60
           MSASRF+KCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWD
Sbjct: 1   MSASRFVKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWD 60

Query: 61  TAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKL 120
           TAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPI+LVGTKL
Sbjct: 61  TAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIVLVGTKL 120

Query: 121 DLRDDKQFFIDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQQNVKAVFDAAIRVVLQP 180
           DLRDDKQFFIDHPGAVPI+TAQGEELRK IGAP YIECSSKTQ+NVKAVFDAAIRVVLQP
Sbjct: 121 DLRDDKQFFIDHPGAVPITTAQGEELRKQIGAPTYIECSSKTQENVKAVFDAAIRVVLQP 180

Query: 181 PKTKKKKNKAQKACSIL 197
           PK KKKK+KAQKACSIL
Sbjct: 181 PKQKKKKSKAQKACSIL 197

Inactive GDP-bound Rho GTPases reside in the cytosol, are found in a complex with Rho GDP-dissociation inhibitors (Rho GDIs), and are released from the GDI protein in order to translocate to membranes upon activation.

Arabidopsis thaliana (taxid: 3702)

>sp|Q6EP31|RAC5_ORYSJ Rac-like GTP-binding protein 5 OS=Oryza sativa subsp. japonica GN=RAC5 PE=2 SV=2

 Score =  362 bits (928), Expect = 1e-99,   Method: Compositional matrix adjust.
 Identities = 185/197 (93%), Positives = 193/197 (97%)

Query: 1   MSASRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWD 60
           MSASRFIKCVTVGDGAVGKTC+LISYTSNTFPTDYVPTVFDNFSANVVV+GSTVNLGLWD
Sbjct: 1   MSASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWD 60

Query: 61  TAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKL 120
           TAGQEDYNRLRPLSYRGADVF+LAFSLISKASYENVSKKWIPEL+HYAPGVPIILVGTKL
Sbjct: 61  TAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENVSKKWIPELRHYAPGVPIILVGTKL 120

Query: 121 DLRDDKQFFIDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQQNVKAVFDAAIRVVLQP 180
           DLRDDKQFF+DHPGAVPISTAQGEELRKLIGA AYIECSSKTQQN+KAVFDAAI+VVLQP
Sbjct: 121 DLRDDKQFFVDHPGAVPISTAQGEELRKLIGAAAYIECSSKTQQNIKAVFDAAIKVVLQP 180

Query: 181 PKTKKKKNKAQKACSIL 197
           PK KKKK KAQK C+IL
Sbjct: 181 PKQKKKKKKAQKGCAIL 197

Inactive GDP-bound Rho GTPases reside in the cytosol, are found in a complex with Rho GDP-dissociation inhibitors (Rho GDIs), and are released from the GDI protein in order to translocate to membranes upon activation.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q9SBJ6|RAC6_ARATH Rac-like GTP-binding protein ARAC6 OS=Arabidopsis thaliana GN=ARAC6 PE=1 SV=2

 Score =  362 bits (928), Expect = 1e-99,   Method: Compositional matrix adjust.
 Identities = 188/197 (95%), Positives = 194/197 (98%)

Query: 1   MSASRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWD 60
           MSASRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNG+TVNLGLWD
Sbjct: 1   MSASRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGATVNLGLWD 60

Query: 61  TAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKL 120
           TAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPI+LVGTKL
Sbjct: 61  TAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIVLVGTKL 120

Query: 121 DLRDDKQFFIDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQQNVKAVFDAAIRVVLQP 180
           DLRDDKQFFIDHPGAVPI+T QGEEL+KLIGAPAYIECSSK+Q+NVK VFDAAIRVVLQP
Sbjct: 121 DLRDDKQFFIDHPGAVPITTVQGEELKKLIGAPAYIECSSKSQENVKGVFDAAIRVVLQP 180

Query: 181 PKTKKKKNKAQKACSIL 197
           PK KKKKNKAQKACSIL
Sbjct: 181 PKQKKKKNKAQKACSIL 197

Inactive GDP-bound Rho GTPases reside in the cytosol, are found in a complex with Rho GDP-dissociation inhibitors (Rho GDIs), and are released from the GDI protein in order to translocate to membranes upon activation.

Arabidopsis thaliana (taxid: 3702)

>sp|Q38912|RAC3_ARATH Rac-like GTP-binding protein ARAC3 OS=Arabidopsis thaliana GN=ARAC3 PE=1 SV=1

 Score =  361 bits (926), Expect = 2e-99,   Method: Compositional matrix adjust.
 Identities = 179/198 (90%), Positives = 192/198 (96%), Gaps = 1/198 (0%)

Query: 1   MSASRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWD 60
           MSASRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANV+V+G+T+NLGLWD
Sbjct: 1   MSASRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVIVDGNTINLGLWD 60

Query: 61  TAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKL 120
           TAGQEDYNRLRPLSYRGADVF+LAFSL+SKASYENVSKKW+PEL+HYAPGVPIILVGTKL
Sbjct: 61  TAGQEDYNRLRPLSYRGADVFLLAFSLVSKASYENVSKKWVPELRHYAPGVPIILVGTKL 120

Query: 121 DLRDDKQFFIDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQQNVKAVFDAAIRVVLQP 180
           DLRDDKQFF +HPGAVPISTAQGEEL+KLIGAPAYIECS+KTQQNVKAVFDAAI+VVLQP
Sbjct: 121 DLRDDKQFFAEHPGAVPISTAQGEELKKLIGAPAYIECSAKTQQNVKAVFDAAIKVVLQP 180

Query: 181 P-KTKKKKNKAQKACSIL 197
           P   KKKK K+QK CSIL
Sbjct: 181 PKNKKKKKRKSQKGCSIL 198

Inactive GDP-bound Rho GTPases reside in the cytosol, are found in a complex with Rho GDP-dissociation inhibitors (Rho GDIs), and are released from the GDI protein in order to translocate to membranes upon activation. May be involved in cell polarity control during the actin-dependent tip growth of root hairs.

Arabidopsis thaliana (taxid: 3702)

>sp|Q6Z7L8|RAC7_ORYSJ Rac-like GTP-binding protein 7 OS=Oryza sativa subsp. japonica GN=RAC7 PE=2 SV=1

 Score =  358 bits (920), Expect = 9e-99,   Method: Compositional matrix adjust.
 Identities = 166/197 (84%), Positives = 185/197 (93%)

Query: 1   MSASRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWD 60
           MS +RFIKCVTVGDGAVGKTC+LISYTSNTFPTDYVPTVFDNFSANVVV+G+TVNLGLWD
Sbjct: 1   MSTARFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGNTVNLGLWD 60

Query: 61  TAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKL 120
           TAGQEDYNRLRPLSYRGADVF+LAFSLISKASYEN+ KKWIPEL+HYAP VPI+LVGTKL
Sbjct: 61  TAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENIHKKWIPELRHYAPNVPIVLVGTKL 120

Query: 121 DLRDDKQFFIDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQQNVKAVFDAAIRVVLQP 180
           DLR+DKQFF+DHPG  PISTAQGEEL+++IGA AYIECSSKTQQNVK+VFD+AI+VVL P
Sbjct: 121 DLREDKQFFLDHPGLAPISTAQGEELKRMIGAAAYIECSSKTQQNVKSVFDSAIKVVLCP 180

Query: 181 PKTKKKKNKAQKACSIL 197
           PK KKK  + Q++C IL
Sbjct: 181 PKPKKKNTRKQRSCWIL 197

Inactive GDP-bound Rho GTPases reside in the cytosol, are found in a complex with Rho GDP-dissociation inhibitors (Rho GDIs), and are released from the GDI protein in order to translocate to membranes upon activation.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q6ZHA3|RAC6_ORYSJ Rac-like GTP-binding protein 6 OS=Oryza sativa subsp. japonica GN=RAC6 PE=2 SV=1

 Score =  356 bits (914), Expect = 5e-98,   Method: Compositional matrix adjust.
 Identities = 180/197 (91%), Positives = 188/197 (95%)

Query: 1   MSASRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWD 60
           MSASRFIKCVTVGDGAVGKTC+LISYTSNTFPTDYVPTVFDNFSANVVV+G+TVNLGLWD
Sbjct: 1   MSASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGNTVNLGLWD 60

Query: 61  TAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKL 120
           TAGQEDYNRLRPLSYRGADVF+LAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKL
Sbjct: 61  TAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKL 120

Query: 121 DLRDDKQFFIDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQQNVKAVFDAAIRVVLQP 180
           DLRDDKQFF+DHPGAVPI+TAQGEELRK IGAP YIECSSKTQ NVK VFDAAI+VVLQP
Sbjct: 121 DLRDDKQFFVDHPGAVPITTAQGEELRKQIGAPYYIECSSKTQLNVKGVFDAAIKVVLQP 180

Query: 181 PKTKKKKNKAQKACSIL 197
           PK KKKK   + ACSIL
Sbjct: 181 PKAKKKKKAQRGACSIL 197

Inactive GDP-bound Rho GTPases reside in the cytosol, are found in a complex with Rho GDP-dissociation inhibitors (Rho GDIs), and are released from the GDI protein in order to translocate to membranes upon activation.

Oryza sativa subsp. japonica (taxid: 39947)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	197
388518421	197	unknown [Lotus japonicus]	1.0	1.0	0.934	1e-105
4586584	197	rac-type small GTP-binding protein [Cice	1.0	1.0	0.913	1e-104
357473803	197	Rac-like GTP-binding protein [Medicago t	1.0	1.0	0.903	1e-102
47600747	197	small GTPase Rac4 [Medicago sativa]	1.0	1.0	0.898	1e-102
388518567	197	unknown [Medicago truncatula]	1.0	1.0	0.898	1e-102
74095369	197	putative Rho GTPase [Medicago sativa sub	1.0	1.0	0.893	1e-101
388495604	197	unknown [Lotus japonicus]	1.0	1.0	0.969	1e-101
317106601	197	JHL20J20.16 [Jatropha curcas]	1.0	1.0	0.923	1e-101
449450502	197	PREDICTED: rac-like GTP-binding protein	1.0	1.0	0.923	1e-101
388516933	187	unknown [Medicago truncatula]	0.949	1.0	0.946	1e-101

>gi|388518421|gb|AFK47272.1| unknown [Lotus japonicus]

 Score =  387 bits (994), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 184/197 (93%), Positives = 193/197 (97%)

Query: 1   MSASRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWD 60
           MSAS+FIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVV+GSTVNLGLWD
Sbjct: 1   MSASKFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWD 60

Query: 61  TAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKL 120
           TAGQEDYNRLRPLSYRGADVFILAFSLIS+A YEN++KKWIPEL+HYAPGVPIILVGTKL
Sbjct: 61  TAGQEDYNRLRPLSYRGADVFILAFSLISRAGYENIAKKWIPELRHYAPGVPIILVGTKL 120

Query: 121 DLRDDKQFFIDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQQNVKAVFDAAIRVVLQP 180
           DLRDDKQFFI+HPGAVPI+TAQGEELRKLIGAPAYIECSSKTQQNVKAVFDAAI+VVLQP
Sbjct: 121 DLRDDKQFFINHPGAVPITTAQGEELRKLIGAPAYIECSSKTQQNVKAVFDAAIKVVLQP 180

Query: 181 PKTKKKKNKAQKACSIL 197
           PK KK K KAQKACSIL
Sbjct: 181 PKQKKNKRKAQKACSIL 197

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|4586584|dbj|BAA76424.1| rac-type small GTP-binding protein [Cicer arietinum]

 Score =  381 bits (978), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 180/197 (91%), Positives = 190/197 (96%)

Query: 1   MSASRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWD 60
           MS SRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVV+GST+NLGLWD
Sbjct: 1   MSGSRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVDGSTINLGLWD 60

Query: 61  TAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKL 120
           TAGQEDYNRLRPLSYRGADVF+LAFSLIS+ASYEN++KKWIPEL+HYAPGVPIILVGTKL
Sbjct: 61  TAGQEDYNRLRPLSYRGADVFLLAFSLISRASYENIAKKWIPELRHYAPGVPIILVGTKL 120

Query: 121 DLRDDKQFFIDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQQNVKAVFDAAIRVVLQP 180
           DLRDDKQFF DHPGAVPI+TAQGEELRKLIGAP YIECSSKTQ+NVKAVFDAAI+VVLQP
Sbjct: 121 DLRDDKQFFQDHPGAVPITTAQGEELRKLIGAPVYIECSSKTQKNVKAVFDAAIKVVLQP 180

Query: 181 PKTKKKKNKAQKACSIL 197
           PK KK K K QKACSIL
Sbjct: 181 PKQKKTKRKGQKACSIL 197

Source: Cicer arietinum

Species: Cicer arietinum

Genus: Cicer

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357473803|ref|XP_003607186.1| Rac-like GTP-binding protein [Medicago truncatula] gi|20269983|gb|AAM18133.1|AF498357_1 small G-protein ROP3 [Medicago truncatula] gi|355508241|gb|AES89383.1| Rac-like GTP-binding protein [Medicago truncatula]

 Score =  377 bits (969), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 178/197 (90%), Positives = 188/197 (95%)

Query: 1   MSASRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWD 60
           MS SRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVV+GST+NLGLWD
Sbjct: 1   MSGSRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVDGSTINLGLWD 60

Query: 61  TAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKL 120
           TAGQEDYNRLRPLSYRGADVF+LAFSLISKASYEN++KKWIPEL+HYAPGVPIILVGTKL
Sbjct: 61  TAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENIAKKWIPELRHYAPGVPIILVGTKL 120

Query: 121 DLRDDKQFFIDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQQNVKAVFDAAIRVVLQP 180
           DLRDD QFF DHPGA PI+TAQGEELRKLIGAP YIECSSKTQ+NVKAVFD+AI+VVLQP
Sbjct: 121 DLRDDSQFFQDHPGAAPITTAQGEELRKLIGAPVYIECSSKTQKNVKAVFDSAIKVVLQP 180

Query: 181 PKTKKKKNKAQKACSIL 197
           PK KK K K QKACSIL
Sbjct: 181 PKQKKTKRKGQKACSIL 197

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|47600747|emb|CAG30067.1| small GTPase Rac4 [Medicago sativa]

 Score =  377 bits (967), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 177/197 (89%), Positives = 188/197 (95%)

Query: 1   MSASRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWD 60
           MS SRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVV+GST+NLGLWD
Sbjct: 1   MSGSRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVDGSTINLGLWD 60

Query: 61  TAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKL 120
           TAGQEDYNRLRPLSYRGADVF+LAFSLISKASYEN++KKWIPEL+HYAPGVPIILVGTKL
Sbjct: 61  TAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENIAKKWIPELRHYAPGVPIILVGTKL 120

Query: 121 DLRDDKQFFIDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQQNVKAVFDAAIRVVLQP 180
           DLRDD QFF DHPGA PI+TAQGEELRKLIGAP YIECSSKTQ+NVKAVFD+AI+VVLQP
Sbjct: 121 DLRDDSQFFQDHPGAAPITTAQGEELRKLIGAPVYIECSSKTQKNVKAVFDSAIKVVLQP 180

Query: 181 PKTKKKKNKAQKACSIL 197
           PK KK K K QKACSI+
Sbjct: 181 PKQKKTKRKGQKACSIM 197

Source: Medicago sativa

Species: Medicago sativa

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388518567|gb|AFK47345.1| unknown [Medicago truncatula]

 Score =  375 bits (962), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 177/197 (89%), Positives = 187/197 (94%)

Query: 1   MSASRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWD 60
           MS SRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVV+GST+NLGLWD
Sbjct: 1   MSGSRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVDGSTINLGLWD 60

Query: 61  TAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKL 120
           TAGQEDYNRLRPLSYRGADVF+LAFSLISKASYEN++KKWIPEL+HYAPGVPIILVGTKL
Sbjct: 61  TAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENIAKKWIPELRHYAPGVPIILVGTKL 120

Query: 121 DLRDDKQFFIDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQQNVKAVFDAAIRVVLQP 180
           DLRDD QFF DHPGA  I+TAQGEELRKLIGAP YIECSSKTQ+NVKAVFD+AI+VVLQP
Sbjct: 121 DLRDDSQFFQDHPGAASITTAQGEELRKLIGAPVYIECSSKTQKNVKAVFDSAIKVVLQP 180

Query: 181 PKTKKKKNKAQKACSIL 197
           PK KK K K QKACSIL
Sbjct: 181 PKQKKTKRKGQKACSIL 197

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|74095369|emb|CAI84892.1| putative Rho GTPase [Medicago sativa subsp. x varia]

 Score =  373 bits (957), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 176/197 (89%), Positives = 187/197 (94%)

Query: 1   MSASRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWD 60
           MS SRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVV+GST+NLGLWD
Sbjct: 1   MSGSRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVDGSTINLGLWD 60

Query: 61  TAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKL 120
           TAGQEDYNRLRPLSYRGADVF+LAFSLISKASYEN++KKWIPEL+HYAPGVPIILVGTKL
Sbjct: 61  TAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENIAKKWIPELRHYAPGVPIILVGTKL 120

Query: 121 DLRDDKQFFIDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQQNVKAVFDAAIRVVLQP 180
           DLRDD QFF DHPGA PI+TAQGEEL+KLIGAP YIEC SKTQ+NVKAVFD+AI+VVLQP
Sbjct: 121 DLRDDSQFFQDHPGAAPITTAQGEELKKLIGAPIYIECYSKTQKNVKAVFDSAIKVVLQP 180

Query: 181 PKTKKKKNKAQKACSIL 197
           PK KK K K QKACSIL
Sbjct: 181 PKQKKTKRKGQKACSIL 197

Source: Medicago sativa subsp. x varia

Species: Medicago sativa

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388495604|gb|AFK35868.1| unknown [Lotus japonicus]

 Score =  372 bits (956), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 191/197 (96%), Positives = 194/197 (98%)

Query: 1   MSASRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWD 60
           MSASRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWD
Sbjct: 1   MSASRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWD 60

Query: 61  TAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKL 120
           TAGQEDYNRLRPLSYRGADVFILAF LISKASYENVSKKWIPELKHYAPGVPIILVGTKL
Sbjct: 61  TAGQEDYNRLRPLSYRGADVFILAFFLISKASYENVSKKWIPELKHYAPGVPIILVGTKL 120

Query: 121 DLRDDKQFFIDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQQNVKAVFDAAIRVVLQP 180
           DLRDDKQFF+DHPGAVPI+TAQGEELRKLI APAYIECSSKTQQNVKAVFDAAIRVVLQP
Sbjct: 121 DLRDDKQFFLDHPGAVPITTAQGEELRKLINAPAYIECSSKTQQNVKAVFDAAIRVVLQP 180

Query: 181 PKTKKKKNKAQKACSIL 197
           PK KKKKNKAQ+ACSIL
Sbjct: 181 PKQKKKKNKAQRACSIL 197

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|317106601|dbj|BAJ53109.1| JHL20J20.16 [Jatropha curcas]

 Score =  372 bits (954), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 182/197 (92%), Positives = 189/197 (95%)

Query: 1   MSASRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWD 60
           MSASRFIKCVTVGDGAVGKTC+LISYTSNTFPTDYVPTVFDNFSANVVV+GSTVNLGLWD
Sbjct: 1   MSASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWD 60

Query: 61  TAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKL 120
           TAGQEDYNRLRPLSYRGADVFILAFSLISKASYENV+KKWIPELKHYAPGVP+ILVGTKL
Sbjct: 61  TAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELKHYAPGVPVILVGTKL 120

Query: 121 DLRDDKQFFIDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQQNVKAVFDAAIRVVLQP 180
           DLRDD QFFIDHPGA PI+TAQGEELRKLIGAPAYIECSSKTQQNVK VFDAAI+VVLQP
Sbjct: 121 DLRDDDQFFIDHPGAAPITTAQGEELRKLIGAPAYIECSSKTQQNVKGVFDAAIKVVLQP 180

Query: 181 PKTKKKKNKAQKACSIL 197
           PK  KKK K Q +CSIL
Sbjct: 181 PKKNKKKKKGQTSCSIL 197

Source: Jatropha curcas

Species: Jatropha curcas

Genus: Jatropha

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449450502|ref|XP_004143001.1| PREDICTED: rac-like GTP-binding protein RAC1-like [Cucumis sativus] gi|449521609|ref|XP_004167822.1| PREDICTED: rac-like GTP-binding protein RAC1-like [Cucumis sativus]

 Score =  372 bits (954), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 182/197 (92%), Positives = 192/197 (97%)

Query: 1   MSASRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWD 60
           MSASRFIKCVTVGDGAVGKTC+LISYTSNTFPTDYVPTVFDNFSANVVV+GSTVNLGLWD
Sbjct: 1   MSASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWD 60

Query: 61  TAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKL 120
           TAGQEDYNRLRPLSYRGADVFILAFSLISKASYENV+KKWIPEL+HYAPGVPI+LVGTKL
Sbjct: 61  TAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIVLVGTKL 120

Query: 121 DLRDDKQFFIDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQQNVKAVFDAAIRVVLQP 180
           DLRDDKQFF+DHPGAVPIST QGEELRK+IGAPAYIECSSKTQQNVK VFDAAI+VVLQP
Sbjct: 121 DLRDDKQFFVDHPGAVPISTVQGEELRKVIGAPAYIECSSKTQQNVKGVFDAAIKVVLQP 180

Query: 181 PKTKKKKNKAQKACSIL 197
           PK+KKKK K+Q  CSIL
Sbjct: 181 PKSKKKKKKSQNVCSIL 197

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388516933|gb|AFK46528.1| unknown [Medicago truncatula]

 Score =  372 bits (954), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 177/187 (94%), Positives = 183/187 (97%)

Query: 1   MSASRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWD 60
           MSASRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWD
Sbjct: 1   MSASRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWD 60

Query: 61  TAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKL 120
           TAGQEDYNRLRPLSYRG DVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKL
Sbjct: 61  TAGQEDYNRLRPLSYRGTDVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKL 120

Query: 121 DLRDDKQFFIDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQQNVKAVFDAAIRVVLQP 180
           DLRDDKQFF+DHPGAVPI+TAQGEEL KLI APAYIECSSK+QQNVKAVFDAAIRVVLQP
Sbjct: 121 DLRDDKQFFVDHPGAVPITTAQGEELTKLINAPAYIECSSKSQQNVKAVFDAAIRVVLQP 180

Query: 181 PKTKKKK 187
           PK +K++
Sbjct: 181 PKQRKRE 187

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	197
TAIR|locus:2827916	197	ARAC1 "Arabidopsis RAC-like 1"	1.0	1.0	0.893	4.5e-91
TAIR|locus:2080878	197	ROP1 "RHO-related protein from	1.0	1.0	0.893	5.7e-91
TAIR|locus:2125399	197	RAC6 "RAC-like 6" [Arabidopsis	1.0	1.0	0.883	4e-90
UNIPROTKB|Q6ZHA3	197	RAC6 "Rac-like GTP-binding pro	1.0	1.0	0.868	2e-88
TAIR|locus:2131606	198	RAC3 "RAC-like 3" [Arabidopsis	0.903	0.898	0.926	2e-88
TAIR|locus:2204380	196	ARAC5 "RAC-like GTP binding pr	0.903	0.908	0.938	5.3e-88
TAIR|locus:2198566	195	ROP2 "RHO-related protein from	0.893	0.902	0.926	3.3e-86
TAIR|locus:2161343	201	RAC2 "RAC-like 2" [Arabidopsis	0.903	0.885	0.882	1.2e-83
UNIPROTKB|Q6Z808	214	RAC3 "Rac-like GTP-binding pro	0.898	0.827	0.836	1.1e-80
TAIR|locus:2170778	215	RAC10 "RAC-like 10" [Arabidops	0.898	0.823	0.824	3.3e-79

TAIR|locus:2827916 ARAC1 "Arabidopsis RAC-like 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 908 (324.7 bits), Expect = 4.5e-91, P = 4.5e-91
 Identities = 176/197 (89%), Positives = 181/197 (91%)

Query:     1 MSASRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWD 60
             MSASRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNG+TVNLGLWD
Sbjct:     1 MSASRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGATVNLGLWD 60

Query:    61 TAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKL 120
             TAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPI+LVGTKL
Sbjct:    61 TAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIVLVGTKL 120

Query:   121 DLRDDKQFFIDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQQNVKAVFDAAIRVVLXX 180
             DLRDDKQFFIDHPGAVPI+TAQGEEL+KLIGAPAYIECSSKTQ+NVK VFDAAIRVVL  
Sbjct:   121 DLRDDKQFFIDHPGAVPITTAQGEELKKLIGAPAYIECSSKTQENVKGVFDAAIRVVLQP 180

Query:   181 XXXXXXXXXXXXXCSIL 197
                          CSIL
Sbjct:   181 PKQKKKKSKAQKACSIL 197

GO:0005525 "GTP binding" evidence=IEA;ISS

GO:0007264 "small GTPase mediated signal transduction" evidence=IEA

GO:0009738 "abscisic acid mediated signaling pathway" evidence=TAS

GO:0005634 "nucleus" evidence=IDA

GO:0005737 "cytoplasm" evidence=IDA

GO:0005819 "spindle" evidence=IDA

GO:0009524 "phragmoplast" evidence=IDA

GO:0009734 "auxin mediated signaling pathway" evidence=IMP

GO:0005886 "plasma membrane" evidence=IDA

GO:0007015 "actin filament organization" evidence=RCA

TAIR|locus:2080878 ROP1 "RHO-related protein from plants 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 907 (324.3 bits), Expect = 5.7e-91, P = 5.7e-91
 Identities = 176/197 (89%), Positives = 180/197 (91%)

Query:     1 MSASRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWD 60
             MSASRF+KCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWD
Sbjct:     1 MSASRFVKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWD 60

Query:    61 TAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKL 120
             TAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPI+LVGTKL
Sbjct:    61 TAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIVLVGTKL 120

Query:   121 DLRDDKQFFIDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQQNVKAVFDAAIRVVLXX 180
             DLRDDKQFFIDHPGAVPI+TAQGEELRK IGAP YIECSSKTQ+NVKAVFDAAIRVVL  
Sbjct:   121 DLRDDKQFFIDHPGAVPITTAQGEELRKQIGAPTYIECSSKTQENVKAVFDAAIRVVLQP 180

Query:   181 XXXXXXXXXXXXXCSIL 197
                          CSIL
Sbjct:   181 PKQKKKKSKAQKACSIL 197

GO:0005525 "GTP binding" evidence=IEA;ISS

GO:0005622 "intracellular" evidence=IEA

GO:0007264 "small GTPase mediated signal transduction" evidence=IEA

GO:0009860 "pollen tube growth" evidence=RCA;IMP

GO:0005886 "plasma membrane" evidence=TAS

GO:0005634 "nucleus" evidence=IDA

GO:0005730 "nucleolus" evidence=IDA

GO:0005737 "cytoplasm" evidence=IDA

GO:0005819 "spindle" evidence=IDA

GO:0009524 "phragmoplast" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0030833 "regulation of actin filament polymerization" evidence=IGI

GO:0030834 "regulation of actin filament depolymerization" evidence=IGI

GO:0017157 "regulation of exocytosis" evidence=IDA

GO:0051650 "establishment of vesicle localization" evidence=IDA

GO:0032794 "GTPase activating protein binding" evidence=IPI

GO:0045177 "apical part of cell" evidence=IDA

GO:0007015 "actin filament organization" evidence=RCA

GO:0009827 "plant-type cell wall modification" evidence=RCA

GO:0030036 "actin cytoskeleton organization" evidence=RCA

GO:0030048 "actin filament-based movement" evidence=RCA

GO:0003924 "GTPase activity" evidence=ISS

TAIR|locus:2125399 RAC6 "RAC-like 6" [Arabidopsis thaliana (taxid:3702)]

 Score = 899 (321.5 bits), Expect = 4.0e-90, P = 4.0e-90
 Identities = 174/197 (88%), Positives = 180/197 (91%)

Query:     1 MSASRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWD 60
             MSASRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNG+TVNLGLWD
Sbjct:     1 MSASRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGATVNLGLWD 60

Query:    61 TAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKL 120
             TAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPI+LVGTKL
Sbjct:    61 TAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIVLVGTKL 120

Query:   121 DLRDDKQFFIDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQQNVKAVFDAAIRVVLXX 180
             DLRDDKQFFIDHPGAVPI+T QGEEL+KLIGAPAYIECSSK+Q+NVK VFDAAIRVVL  
Sbjct:   121 DLRDDKQFFIDHPGAVPITTVQGEELKKLIGAPAYIECSSKSQENVKGVFDAAIRVVLQP 180

Query:   181 XXXXXXXXXXXXXCSIL 197
                          CSIL
Sbjct:   181 PKQKKKKNKAQKACSIL 197

GO:0005525 "GTP binding" evidence=IEA;ISS

GO:0005622 "intracellular" evidence=IEA

GO:0007264 "small GTPase mediated signal transduction" evidence=IEA

GO:0005634 "nucleus" evidence=IDA

GO:0005737 "cytoplasm" evidence=IDA

GO:0007015 "actin filament organization" evidence=RCA

UNIPROTKB|Q6ZHA3 RAC6 "Rac-like GTP-binding protein 6" [Oryza sativa Japonica Group (taxid:39947)]

 Score = 883 (315.9 bits), Expect = 2.0e-88, P = 2.0e-88
 Identities = 171/197 (86%), Positives = 178/197 (90%)

Query:     1 MSASRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWD 60
             MSASRFIKCVTVGDGAVGKTC+LISYTSNTFPTDYVPTVFDNFSANVVV+G+TVNLGLWD
Sbjct:     1 MSASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGNTVNLGLWD 60

Query:    61 TAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKL 120
             TAGQEDYNRLRPLSYRGADVF+LAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKL
Sbjct:    61 TAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKL 120

Query:   121 DLRDDKQFFIDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQQNVKAVFDAAIRVVLXX 180
             DLRDDKQFF+DHPGAVPI+TAQGEELRK IGAP YIECSSKTQ NVK VFDAAI+VVL  
Sbjct:   121 DLRDDKQFFVDHPGAVPITTAQGEELRKQIGAPYYIECSSKTQLNVKGVFDAAIKVVLQP 180

Query:   181 XXXXXXXXXXXXXCSIL 197
                          CSIL
Sbjct:   181 PKAKKKKKAQRGACSIL 197

GO:0005515 "protein binding" evidence=IPI

TAIR|locus:2131606 RAC3 "RAC-like 3" [Arabidopsis thaliana (taxid:3702)]

 Score = 883 (315.9 bits), Expect = 2.0e-88, P = 2.0e-88
 Identities = 165/178 (92%), Positives = 177/178 (99%)

Query:     1 MSASRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWD 60
             MSASRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANV+V+G+T+NLGLWD
Sbjct:     1 MSASRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVIVDGNTINLGLWD 60

Query:    61 TAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKL 120
             TAGQEDYNRLRPLSYRGADVF+LAFSL+SKASYENVSKKW+PEL+HYAPGVPIILVGTKL
Sbjct:    61 TAGQEDYNRLRPLSYRGADVFLLAFSLVSKASYENVSKKWVPELRHYAPGVPIILVGTKL 120

Query:   121 DLRDDKQFFIDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQQNVKAVFDAAIRVVL 178
             DLRDDKQFF +HPGAVPISTAQGEEL+KLIGAPAYIECS+KTQQNVKAVFDAAI+VVL
Sbjct:   121 DLRDDKQFFAEHPGAVPISTAQGEELKKLIGAPAYIECSAKTQQNVKAVFDAAIKVVL 178

GO:0003924 "GTPase activity" evidence=IEA;IDA

GO:0005525 "GTP binding" evidence=IEA;ISS

GO:0005622 "intracellular" evidence=IEA

GO:0006184 "GTP catabolic process" evidence=IEA

GO:0007165 "signal transduction" evidence=IEA

GO:0007264 "small GTPase mediated signal transduction" evidence=IEA

GO:0015031 "protein transport" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0005886 "plasma membrane" evidence=IDA

GO:0030427 "site of polarized growth" evidence=IDA

GO:0005634 "nucleus" evidence=IDA

GO:0005730 "nucleolus" evidence=IDA

GO:0005737 "cytoplasm" evidence=IDA

GO:0005819 "spindle" evidence=IDA

GO:0000226 "microtubule cytoskeleton organization" evidence=RCA

GO:0000394 "RNA splicing, via endonucleolytic cleavage and ligation" evidence=RCA

GO:0007015 "actin filament organization" evidence=RCA

GO:0009086 "methionine biosynthetic process" evidence=RCA

GO:0009860 "pollen tube growth" evidence=RCA

TAIR|locus:2204380 ARAC5 "RAC-like GTP binding protein 5" [Arabidopsis thaliana (taxid:3702)]

 Score = 879 (314.5 bits), Expect = 5.3e-88, P = 5.3e-88
 Identities = 167/178 (93%), Positives = 176/178 (98%)

Query:     1 MSASRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWD 60
             MSASRFIKCVTVGDGAVGKTC+LISYTSNTFPTDYVPTVFDNFSANVVV+G+TVNLGLWD
Sbjct:     1 MSASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGNTVNLGLWD 60

Query:    61 TAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKL 120
             TAGQEDYNRLRPLSYRGADVFILAFSLISKASYENV+KKWIPEL+HYAPGVPIILVGTKL
Sbjct:    61 TAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKL 120

Query:   121 DLRDDKQFFIDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQQNVKAVFDAAIRVVL 178
             DLRDDKQFFIDHPGAVPI+T QGEEL+KLIG+P YIECSSKTQQNVKAVFDAAI+VVL
Sbjct:   121 DLRDDKQFFIDHPGAVPITTNQGEELKKLIGSPIYIECSSKTQQNVKAVFDAAIKVVL 178

GO:0005525 "GTP binding" evidence=IEA;IDA;TAS

GO:0005622 "intracellular" evidence=IEA

GO:0007264 "small GTPase mediated signal transduction" evidence=IEA

GO:0005515 "protein binding" evidence=IPI

GO:0003924 "GTPase activity" evidence=ISS

GO:0005886 "plasma membrane" evidence=IDA

GO:0005634 "nucleus" evidence=IDA

GO:0005730 "nucleolus" evidence=IDA

GO:0005737 "cytoplasm" evidence=IDA

GO:0009524 "phragmoplast" evidence=IDA

GO:0019901 "protein kinase binding" evidence=IPI

GO:0000271 "polysaccharide biosynthetic process" evidence=RCA

GO:0007015 "actin filament organization" evidence=RCA

GO:0009825 "multidimensional cell growth" evidence=RCA

GO:0009932 "cell tip growth" evidence=RCA

GO:0010817 "regulation of hormone levels" evidence=RCA

GO:0043481 "anthocyanin accumulation in tissues in response to UV light" evidence=RCA

GO:0048767 "root hair elongation" evidence=RCA

GO:0071555 "cell wall organization" evidence=RCA

TAIR|locus:2198566 ROP2 "RHO-related protein from plants 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 862 (308.5 bits), Expect = 3.3e-86, P = 3.3e-86
 Identities = 163/176 (92%), Positives = 173/176 (98%)

Query:     3 ASRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWDTA 62
             ASRFIKCVTVGDGAVGKTC+LISYTSNTFPTDYVPTVFDNFSANVVV+G+TVNLGLWDTA
Sbjct:     2 ASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGNTVNLGLWDTA 61

Query:    63 GQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDL 122
             GQEDYNRLRPLSYRGADVFILAFSLISKASYEN++KKWIPEL+HYAPGVPIILVGTKLDL
Sbjct:    62 GQEDYNRLRPLSYRGADVFILAFSLISKASYENIAKKWIPELRHYAPGVPIILVGTKLDL 121

Query:   123 RDDKQFFIDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQQNVKAVFDAAIRVVL 178
             RDDKQFFIDHPGAVPI+T QGEEL+KLIG+  YIECSSKTQQNVKAVFDAAI+VVL
Sbjct:   122 RDDKQFFIDHPGAVPITTNQGEELKKLIGSAVYIECSSKTQQNVKAVFDAAIKVVL 177

GO:0003924 "GTPase activity" evidence=IEA

GO:0005525 "GTP binding" evidence=IEA;ISS

GO:0005622 "intracellular" evidence=IEA

GO:0006184 "GTP catabolic process" evidence=IEA

GO:0007165 "signal transduction" evidence=IEA

GO:0007264 "small GTPase mediated signal transduction" evidence=IEA

GO:0015031 "protein transport" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0009860 "pollen tube growth" evidence=RCA;IMP

GO:0005634 "nucleus" evidence=IDA

GO:0005730 "nucleolus" evidence=IDA

GO:0005737 "cytoplasm" evidence=IDA

GO:0000226 "microtubule cytoskeleton organization" evidence=RCA;IMP

GO:0000902 "cell morphogenesis" evidence=IGI

GO:0005886 "plasma membrane" evidence=IDA

GO:0009416 "response to light stimulus" evidence=IDA

GO:0010119 "regulation of stomatal movement" evidence=IMP

GO:0000271 "polysaccharide biosynthetic process" evidence=RCA

GO:0007015 "actin filament organization" evidence=RCA

GO:0009825 "multidimensional cell growth" evidence=RCA

GO:0009932 "cell tip growth" evidence=RCA

GO:0010817 "regulation of hormone levels" evidence=RCA

GO:0043481 "anthocyanin accumulation in tissues in response to UV light" evidence=RCA

GO:0048767 "root hair elongation" evidence=RCA

GO:0071555 "cell wall organization" evidence=RCA

TAIR|locus:2161343 RAC2 "RAC-like 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 838 (300.0 bits), Expect = 1.2e-83, P = 1.2e-83
 Identities = 157/178 (88%), Positives = 168/178 (94%)

Query:     1 MSASRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWD 60
             MS +RFIKCVTVGDGAVGKTC+LISYTSNTFPTDYVPTVFDNFSANVVV+GSTVNLGLWD
Sbjct:     1 MSTARFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWD 60

Query:    61 TAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKL 120
             TAGQEDYNRLRPLSYRGADVF+LAFSLISKASYEN+ KKW+PELKHYAPG+PI+LVGTKL
Sbjct:    61 TAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENIHKKWLPELKHYAPGIPIVLVGTKL 120

Query:   121 DLRDDKQFFIDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQQNVKAVFDAAIRVVL 178
             DLRDDKQF  DHPGA  I+TAQGEELRK+IGA  Y+ECSSKTQQNVKAVFD AIRV L
Sbjct:   121 DLRDDKQFLKDHPGAASITTAQGEELRKMIGAVRYLECSSKTQQNVKAVFDTAIRVAL 178

GO:0005525 "GTP binding" evidence=IEA;ISS

GO:0005622 "intracellular" evidence=IEA

GO:0007264 "small GTPase mediated signal transduction" evidence=IEA

GO:0005886 "plasma membrane" evidence=IDA

GO:0007015 "actin filament organization" evidence=RCA

GO:0009832 "plant-type cell wall biogenesis" evidence=RCA

GO:0010413 "glucuronoxylan metabolic process" evidence=RCA

GO:0045492 "xylan biosynthetic process" evidence=RCA

UNIPROTKB|Q6Z808 RAC3 "Rac-like GTP-binding protein 3" [Oryza sativa Japonica Group (taxid:39947)]

 Score = 810 (290.2 bits), Expect = 1.1e-80, P = 1.1e-80
 Identities = 148/177 (83%), Positives = 166/177 (93%)

Query:     2 SASRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWDT 61
             SASRFIKCVTVGDGAVGKTC+LI YTSN FPTDY+PTVFDNFSANVVV+ +TVNLGLWDT
Sbjct:     4 SASRFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVVDSTTVNLGLWDT 63

Query:    62 AGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLD 121
             AGQEDYNRLRPLSYRGADVF+LAFSL+S+ASYEN+ KKWIPEL+HYAPGVPI+LVGTKLD
Sbjct:    64 AGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENIMKKWIPELQHYAPGVPIVLVGTKLD 123

Query:   122 LRDDKQFFIDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQQNVKAVFDAAIRVVL 178
             LR+DK + +DHPG +P++TAQGEELRK IGA  YIECSSKTQQNVK VFDAAI+VV+
Sbjct:   124 LREDKHYLLDHPGMIPVTTAQGEELRKQIGAAYYIECSSKTQQNVKGVFDAAIKVVI 180

GO:0005515 "protein binding" evidence=IPI

TAIR|locus:2170778 RAC10 "RAC-like 10" [Arabidopsis thaliana (taxid:3702)]

 Score = 796 (285.3 bits), Expect = 3.3e-79, P = 3.3e-79
 Identities = 146/177 (82%), Positives = 165/177 (93%)

Query:     2 SASRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWDT 61
             SAS+FIKCVTVGDGAVGKTC+LI YTSN FPTDY+PTVFDNFSANVVV G+TVNLGLWDT
Sbjct:     4 SASKFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVVEGTTVNLGLWDT 63

Query:    62 AGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLD 121
             AGQEDYNRLRPLSYRGADVF+L+FSL+S+ASYENV KKWIPEL+H+APGVP++LVGTKLD
Sbjct:    64 AGQEDYNRLRPLSYRGADVFVLSFSLVSRASYENVFKKWIPELQHFAPGVPLVLVGTKLD 123

Query:   122 LRDDKQFFIDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQQNVKAVFDAAIRVVL 178
             LR+DK +  DHPG  P++TAQGEELRKLIGA  YIECSSKTQQNVKAVFD+AI+ V+
Sbjct:   124 LREDKHYLADHPGLSPVTTAQGEELRKLIGATYYIECSSKTQQNVKAVFDSAIKEVI 180

GO:0005576 "extracellular region" evidence=ISM

GO:0005886 "plasma membrane" evidence=IDA

GO:0019901 "protein kinase binding" evidence=IPI

GO:0005634 "nucleus" evidence=IDA

GO:0009788 "negative regulation of abscisic acid mediated signaling pathway" evidence=IDA

GO:0019903 "protein phosphatase binding" evidence=IPI

GO:0007015 "actin filament organization" evidence=RCA

GO:0009531 "secondary cell wall" evidence=IDA

GO:0009664 "plant-type cell wall organization" evidence=IMP

GO:0005525 "GTP binding" evidence=TAS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
P34144	RAC1A_DICDI	No assigned EC number	0.6217	0.9593	0.9742	yes	no
Q6Z7L8	RAC7_ORYSJ	No assigned EC number	0.8426	1.0	1.0	yes	no
Q6RUV5	RAC1_RAT	No assigned EC number	0.6397	0.9340	0.9583	yes	no
Q67VP4	RAC4_ORYSJ	No assigned EC number	0.85	0.9137	0.8372	no	no
P63000	RAC1_HUMAN	No assigned EC number	0.6397	0.9340	0.9583	yes	no
Q6Z808	RAC3_ORYSJ	No assigned EC number	0.7828	0.9949	0.9158	no	no
Q39435	RAC1_BETVU	No assigned EC number	0.9746	1.0	1.0	N/A	no
C4YDI6	CDC42_CANAW	No assigned EC number	0.5647	0.9441	0.9738	N/A	no
Q9SBJ6	RAC6_ARATH	No assigned EC number	0.9543	1.0	1.0	yes	no
P62998	RAC1_BOVIN	No assigned EC number	0.6397	0.9340	0.9583	yes	no
P62999	RAC1_CANFA	No assigned EC number	0.6397	0.9340	0.9583	yes	no
P19073	CDC42_YEAST	No assigned EC number	0.5492	0.9441	0.9738	yes	no
O82481	RAC10_ARATH	No assigned EC number	0.8212	0.9086	0.8325	no	no
O82480	RAC7_ARATH	No assigned EC number	0.76	0.9847	0.9282	no	no
Q68Y52	RAC2_ORYSJ	No assigned EC number	0.735	0.9847	0.9065	no	no
Q41253	RAC13_GOSHI	No assigned EC number	0.8820	0.9035	0.9081	N/A	no
Q9SSX0	RAC1_ORYSJ	No assigned EC number	0.7525	0.9847	0.9065	no	no
Q38903	RAC2_ARATH	No assigned EC number	0.8770	0.9086	0.8905	no	no
Q38902	RAC1_ARATH	No assigned EC number	0.9593	1.0	1.0	yes	no
Q41254	RAC9_GOSHI	No assigned EC number	0.8595	0.9035	0.9081	N/A	no
Q24814	RACA_ENTHI	No assigned EC number	0.5736	0.9543	0.9591	N/A	no
Q9XGU0	RAC9_ARATH	No assigned EC number	0.7604	0.9746	0.9186	no	no
O04369	RAC1_LOTJA	No assigned EC number	0.9340	1.0	1.0	N/A	no
P48554	RAC2_DROME	No assigned EC number	0.6010	0.9492	0.9739	yes	no
Q40220	RAC2_LOTJA	No assigned EC number	0.8715	0.9086	0.9132	N/A	no
Q01112	CDC42_SCHPO	No assigned EC number	0.5698	0.9340	0.9583	yes	no
O76321	RECG_ENTHI	No assigned EC number	0.5965	0.8832	0.8743	N/A	no
Q35638	RHO1_PEA	No assigned EC number	0.9695	1.0	1.0	N/A	no
Q9SU67	RAC8_ARATH	No assigned EC number	0.8212	0.9086	0.8605	no	no
P0CY33	CDC42_CANAL	No assigned EC number	0.5647	0.9441	0.9738	N/A	no
P63001	RAC1_MOUSE	No assigned EC number	0.6397	0.9340	0.9583	yes	no
P92978	RAC11_ARATH	No assigned EC number	0.9593	1.0	1.0	yes	no
Q38937	RAC5_ARATH	No assigned EC number	0.9382	0.9035	0.9081	no	no
Q38912	RAC3_ARATH	No assigned EC number	0.9040	1.0	0.9949	no	no
Q38919	RAC4_ARATH	No assigned EC number	0.9261	0.8934	0.9025	no	no
Q6ZHA3	RAC6_ORYSJ	No assigned EC number	0.9137	1.0	1.0	no	no
Q6EP31	RAC5_ORYSJ	No assigned EC number	0.9390	1.0	1.0	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	197
cd04133	173	cd04133, Rop_like, Rho-related protein from plants	1e-133
smart00174	174	smart00174, RHO, Rho (Ras homology) subfamily of R	1e-108
cd00157	171	cd00157, Rho, Ras homology family (Rho) of small g	1e-105
cd01871	174	cd01871, Rac1_like, Ras-related C3 botulinum toxin	9e-91
cd04132	197	cd04132, Rho4_like, Ras homology family 4 (Rho4) o	1e-86
cd01875	191	cd01875, RhoG, Ras homolog family, member G (RhoG)	8e-78
cd01874	175	cd01874, Cdc42, cell division cycle 42 (Cdc42) is	3e-77
cd04130	173	cd04130, Wrch_1, Wnt-1 responsive Cdc42 homolog (W	2e-76
pfam00071	162	pfam00071, Ras, Ras family	8e-72
cd04135	174	cd04135, Tc10, Rho GTPase TC10 (Tc10)	3e-71
cd01870	175	cd01870, RhoA_like, Ras homology family A (RhoA)-l	3e-71
cd04129	190	cd04129, Rho2, Ras homology family 2 (Rho2) of sma	2e-60
cd00154	159	cd00154, Rab, Ras-related in brain (Rab) family of	6e-53
cd04134	185	cd04134, Rho3, Ras homology family 3 (Rho3) of sma	2e-52
cd04131	176	cd04131, Rnd, Rho family GTPase subfamily Rnd incl	7e-52
COG1100	219	COG1100, COG1100, GTPase SAR1 and related small G	4e-45
cd00876	160	cd00876, Ras, Rat sarcoma (Ras) family of small gu	1e-43
smart00175	164	smart00175, RAB, Rab subfamily of small GTPases	1e-43
cd04172	182	cd04172, Rnd3_RhoE_Rho8, Rnd3/RhoE/Rho8 GTPases	2e-40
cd04173	221	cd04173, Rnd2_Rho7, Rnd2/Rho7 GTPases	6e-38
smart00173	164	smart00173, RAS, Ras subfamily of RAS small GTPase	7e-38
smart00010	166	smart00010, small_GTPase, Small GTPase of the Ras	3e-37
TIGR00231	162	TIGR00231, small_GTP, small GTP-binding protein do	4e-36
cd04123	162	cd04123, Rab21, Rab GTPase family 21 (Rab21)	1e-35
cd04174	232	cd04174, Rnd1_Rho6, Rnd1/Rho6 GTPases	2e-35
cd04138	162	cd04138, H_N_K_Ras_like, Ras GTPase family contain	3e-34
cd01873	195	cd01873, RhoBTB, RhoBTB protein is an atypical mem	2e-32
cd01861	161	cd01861, Rab6, Rab GTPase family 6 (Rab6)	3e-32
PTZ00369	189	PTZ00369, PTZ00369, Ras-like protein; Provisional	5e-32
cd01860	163	cd01860, Rab5_related, Rab-related GTPase family i	3e-31
cd01869	166	cd01869, Rab1_Ypt1, Rab GTPase family 1 includes t	8e-31
cd01867	167	cd01867, Rab8_Rab10_Rab13_like, Rab GTPase familie	1e-30
cd01863	161	cd01863, Rab18, Rab GTPase family 18 (Rab18)	4e-30
cd04106	162	cd04106, Rab23_like, Rab GTPase family 23 (Rab23)-	1e-29
cd04145	164	cd04145, M_R_Ras_like, R-Ras2/TC21, M-Ras/R-Ras3	1e-29
cd04144	190	cd04144, Ras2, Rat sarcoma (Ras) family 2 of small	3e-29
cd04127	180	cd04127, Rab27A, Rab GTPase family 27a (Rab27a)	6e-29
cd01864	165	cd01864, Rab19, Rab GTPase family 19 (Rab19)	3e-28
cd04137	180	cd04137, RheB, Ras Homolog Enriched in Brain (RheB	5e-28
cd04176	163	cd04176, Rap2, Rap2 family GTPase consists of Rap2	3e-27
cd01868	165	cd01868, Rab11_like, Rab GTPase family 11 (Rab11)-	1e-26
cd04139	163	cd04139, RalA_RalB, Ral (Ras-like) family containi	1e-26
cd04116	170	cd04116, Rab9, Rab GTPase family 9 (Rab9)	2e-26
cd04117	164	cd04117, Rab15, Rab GTPase family 15 (Rab15)	3e-26
cd04113	161	cd04113, Rab4, Rab GTPase family 4 (Rab4)	9e-26
cd01862	172	cd01862, Rab7, Rab GTPase family 7 (Rab7)	2e-25
cd04112	191	cd04112, Rab26, Rab GTPase family 26 (Rab26)	3e-25
cd04177	168	cd04177, RSR1, RSR1/Bud1p family GTPase	6e-25
cd04118	193	cd04118, Rab24, Rab GTPase family 24 (Rab24)	2e-24
cd01865	165	cd01865, Rab3, Rab GTPase family 3 contains Rab3A,	6e-24
cd00882	161	cd00882, Ras_like_GTPase, Rat sarcoma (Ras)-like s	7e-24
cd01866	168	cd01866, Rab2, Rab GTPase family 2 (Rab2)	1e-23
cd04136	164	cd04136, Rap_like, Rap-like family consists of Rap	2e-23
PLN03118	211	PLN03118, PLN03118, Rab family protein; Provisiona	5e-23
cd04111	211	cd04111, Rab39, Rab GTPase family 39 (Rab39)	6e-23
cd04110	199	cd04110, Rab35, Rab GTPase family 35 (Rab35)	2e-22
cd04108	170	cd04108, Rab36_Rab34, Rab GTPase families 34 (Rab3	2e-22
PLN03108	210	PLN03108, PLN03108, Rab family protein; Provisiona	3e-22
cd04114	169	cd04114, Rab30, Rab GTPase family 30 (Rab30)	3e-22
cd04141	172	cd04141, Rit_Rin_Ric, Ras-like protein in all tiss	6e-22
cd04146	166	cd04146, RERG_RasL11_like, Ras-related and Estroge	8e-22
cd04175	164	cd04175, Rap1, Rap1 family GTPase consists of Rap1	2e-21
cd01893	168	cd01893, Miro1, Mitochondrial Rho family 1 (Miro1)	3e-21
cd04122	166	cd04122, Rab14, Rab GTPase family 14 (Rab14)	1e-20
cd00877	166	cd00877, Ran, Ras-related nuclear proteins (Ran)/T	3e-20
cd04124	161	cd04124, RabL2, Rab GTPase-like family 2 (Rab-like	2e-19
cd04101	167	cd04101, RabL4, Rab GTPase-like family 4 (Rab-like	8e-19
PTZ00132	215	PTZ00132, PTZ00132, GTP-binding nuclear protein Ra	1e-18
cd04115	170	cd04115, Rab33B_Rab33A, Rab GTPase family 33 inclu	1e-18
PLN03110	216	PLN03110, PLN03110, Rab GTPase; Provisional	8e-18
cd04120	202	cd04120, Rab12, Rab GTPase family 12 (Rab12)	1e-17
pfam08477	116	pfam08477, Miro, Miro-like protein	1e-17
cd04140	165	cd04140, ARHI_like, A Ras homolog member I (ARHI)	8e-17
cd04126	220	cd04126, Rab20, Rab GTPase family 20 (Rab20)	1e-16
cd04121	189	cd04121, Rab40, Rab GTPase family 40 (Rab40) conta	1e-16
cd04147	197	cd04147, Ras_dva, Ras - dorsal-ventral anterior lo	2e-16
PLN03071	219	PLN03071, PLN03071, GTP-binding nuclear protein Ra	4e-16
cd04107	201	cd04107, Rab32_Rab38, Rab GTPase families 18 (Rab1	8e-16
cd04128	182	cd04128, Spg1, Septum-promoting GTPase (Spg1)	2e-15
cd04119	168	cd04119, RJL, Rab GTPase family J-like (RabJ-like)	3e-15
cd04143	247	cd04143, Rhes_like, Ras homolog enriched in striat	6e-15
cd04148	219	cd04148, RGK, Rem, Rem2, Rad, Gem/Kir (RGK) subfam	7e-15
smart00176	200	smart00176, RAN, Ran (Ras-related nuclear proteins	3e-14
cd09914	161	cd09914, RocCOR, Ras of complex proteins (Roc) C-t	4e-14
PTZ00099	176	PTZ00099, PTZ00099, rab6; Provisional	4e-11
cd04109	213	cd04109, Rab28, Rab GTPase family 28 (Rab28)	5e-10
cd04142	198	cd04142, RRP22, Ras-related protein on chromosome	4e-07
cd04103	158	cd04103, Centaurin_gamma, Centaurin gamma (CENTG)	9e-06
cd04159	159	cd04159, Arl10_like, Arf-like 9 (Arl9) and 10 (Arl	4e-05
cd04102	204	cd04102, RabL3, Rab GTPase-like family 3 (Rab-like	0.001
cd04152	183	cd04152, Arl4_Arl7, Arf-like 4 (Arl4) and 7 (Arl7)	0.001

>gnl|CDD|206705 cd04133, Rop_like, Rho-related protein from plants (Rop)-like

 Score =  369 bits (950), Expect = e-133
 Identities = 161/173 (93%), Positives = 169/173 (97%)

Query: 6   FIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQE 65
           FIKCVTVGDGAVGKTC+LISYTSNTFPTDYVPTVFDNFSANVVV+G+TVNLGLWDTAGQE
Sbjct: 1   FIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGNTVNLGLWDTAGQE 60

Query: 66  DYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLRDD 125
           DYNRLRPLSYRGADVF+LAFSLISKASYENV KKWIPEL+HYAPGVPI+LVGTKLDLRDD
Sbjct: 61  DYNRLRPLSYRGADVFLLAFSLISKASYENVLKKWIPELRHYAPGVPIVLVGTKLDLRDD 120

Query: 126 KQFFIDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQQNVKAVFDAAIRVVL 178
           KQFF DHPGAVPI+TAQGEELRK IGA AYIECSSKTQQNVKAVFDAAI+VVL
Sbjct: 121 KQFFADHPGAVPITTAQGEELRKQIGAAAYIECSSKTQQNVKAVFDAAIKVVL 173

The Rop (Rho-related protein from plants) subfamily plays a role in diverse cellular processes, including cytoskeletal organization, pollen and vegetative cell growth, hormone responses, stress responses, and pathogen resistance. Rops are able to regulate several downstream pathways to amplify a specific signal by acting as master switches early in the signaling cascade. They transmit a variety of extracellular and intracellular signals. Rops are involved in establishing cell polarity in root-hair development, root-hair elongation, pollen-tube growth, cell-shape formation, responses to hormones such as abscisic acid (ABA) and auxin, responses to abiotic stresses such as oxygen deprivation, and disease resistance and disease susceptibility. An individual Rop can have a unique function or an overlapping function shared with other Rop proteins; in addition, a given Rop-regulated function can be controlled by one or multiple Rop proteins. For example, Rop1, Rop3, and Rop5 are all involved in pollen-tube growth; Rop2 plays a role in response to low-oxygen environments, cell-morphology, and root-hair development; root-hair development is also regulated by Rop4 and Rop6; Rop6 is also responsible for ABA response, and ABA response is also regulated by Rop10. Plants retain some of the regulatory mechanisms that are shared by other members of the Rho family, but have also developed a number of unique modes for regulating Rops. Unique RhoGEFs have been identified that are exclusively active toward Rop proteins, such as those containing the domain PRONE (plant-specific Rop nucleotide exchanger). Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 173

>gnl|CDD|197554 smart00174, RHO, Rho (Ras homology) subfamily of Ras-like small GTPases

 Score =  307 bits (789), Expect = e-108
 Identities = 106/174 (60%), Positives = 129/174 (74%), Gaps = 2/174 (1%)

Query: 9   CVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQEDYN 68
            V VGDGAVGKTCLLI YT+N FP DYVPTVF+N+SA+V V+G  V LGLWDTAGQEDY+
Sbjct: 1   LVVVGDGAVGKTCLLIVYTTNAFPEDYVPTVFENYSADVEVDGKPVELGLWDTAGQEDYD 60

Query: 69  RLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLRDDKQF 128
           RLRPLSY   DVF++ FS+ S AS+ENV +KW PE+KH+ P VPIILVGTKLDLR+DK  
Sbjct: 61  RLRPLSYPDTDVFLICFSVDSPASFENVKEKWYPEVKHFCPNVPIILVGTKLDLRNDKST 120

Query: 129 FID--HPGAVPISTAQGEELRKLIGAPAYIECSSKTQQNVKAVFDAAIRVVLQP 180
             +       P++  QG+ L K IGA  Y+ECS+ TQ+ V+ VF+ AIR  L  
Sbjct: 121 LEELSKKKQEPVTYEQGQALAKRIGAVKYLECSALTQEGVREVFEEAIRAALNK 174

Members of this subfamily of Ras-like small GTPases include Cdc42 and Rac, as well as Rho isoforms. Length = 174

>gnl|CDD|206641 cd00157, Rho, Ras homology family (Rho) of small guanosine triphosphatases (GTPases)

 Score =  298 bits (766), Expect = e-105
 Identities = 112/171 (65%), Positives = 131/171 (76%), Gaps = 1/171 (0%)

Query: 7   IKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQED 66
           IK V VGDGAVGKTCLLISYT+N FPT+YVPTVFDN+SANV V+G  VNLGLWDTAGQE+
Sbjct: 1   IKIVVVGDGAVGKTCLLISYTTNKFPTEYVPTVFDNYSANVTVDGKQVNLGLWDTAGQEE 60

Query: 67  YNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLRDDK 126
           Y+RLRPLSY   DVF+L FS+ S +S+ENV  KW PE+KHY P VPIILVGTK+DLRDD 
Sbjct: 61  YDRLRPLSYPQTDVFLLCFSVDSPSSFENVKTKWYPEIKHYCPNVPIILVGTKIDLRDDG 120

Query: 127 QFFIDH-PGAVPISTAQGEELRKLIGAPAYIECSSKTQQNVKAVFDAAIRV 176
                      PI+  +GE+L K IGA  Y+ECS+ TQ+ +K VFD AIR 
Sbjct: 121 NTLKKLEKKQKPITPEEGEKLAKEIGAVKYMECSALTQEGLKEVFDEAIRA 171

Members of the Rho (Ras homology) family include RhoA, Cdc42, Rac, Rnd, Wrch1, RhoBTB, and Rop. There are 22 human Rho family members identified currently. These proteins are all involved in the reorganization of the actin cytoskeleton in response to external stimuli. They also have roles in cell transformation by Ras in cytokinesis, in focal adhesion formation and in the stimulation of stress-activated kinase. These various functions are controlled through distinct effector proteins and mediated through a GTP-binding/GTPase cycle involving three classes of regulating proteins: GAPs (GTPase-activating proteins), GEFs (guanine nucleotide exchange factors), and GDIs (guanine nucleotide dissociation inhibitors). Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Since crystal structures often lack C-terminal residues, this feature is not available for annotation in many of the CDs in the hierarchy. Length = 171

>gnl|CDD|206663 cd01871, Rac1_like, Ras-related C3 botulinum toxin substrate 1 (rho family, small GTP binding protein Rac1)-like consists of Rac1, Rac2 and Rac3

 Score =  262 bits (672), Expect = 9e-91
 Identities = 112/173 (64%), Positives = 133/173 (76%), Gaps = 2/173 (1%)

Query: 7   IKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQED 66
           IKCV VGDGAVGKTCLLISYT+N FP +Y+PTVFDN+SANV+V+G  VNLGLWDTAGQED
Sbjct: 2   IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQED 61

Query: 67  YNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLRDDK 126
           Y+RLRPLSY   DVF++ FSL+S AS+ENV  KW PE++H+ P  PIILVGTKLDLRDDK
Sbjct: 62  YDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDK 121

Query: 127 QFF--IDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQQNVKAVFDAAIRVV 177
                +      PI+  QG  + K IGA  Y+ECS+ TQ+ +K VFD AIR V
Sbjct: 122 DTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAV 174

The Rac1-like subfamily consists of Rac1, Rac2, and Rac3 proteins, plus the splice variant Rac1b that contains a 19-residue insertion near switch II relative to Rac1. While Rac1 is ubiquitously expressed, Rac2 and Rac3 are largely restricted to hematopoietic and neural tissues respectively. Rac1 stimulates the formation of actin lamellipodia and membrane ruffles. It also plays a role in cell-matrix adhesion and cell anoikis. In intestinal epithelial cells, Rac1 is an important regulator of migration and mediates apoptosis. Rac1 is also essential for RhoA-regulated actin stress fiber and focal adhesion complex formation. In leukocytes, Rac1 and Rac2 have distinct roles in regulating cell morphology, migration, and invasion, but are not essential for macrophage migration or chemotaxis. Rac3 has biochemical properties that are closely related to Rac1, such as effector interaction, nucleotide binding, and hydrolysis; Rac2 has a slower nucleotide association and is more efficiently activated by the RacGEF Tiam1. Both Rac1 and Rac3 have been implicated in the regulation of cell migration and invasion in human metastatic breast cancer. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 174

>gnl|CDD|206704 cd04132, Rho4_like, Ras homology family 4 (Rho4) of small guanosine triphosphatases (GTPases)-like

 Score =  253 bits (648), Expect = 1e-86
 Identities = 99/194 (51%), Positives = 125/194 (64%), Gaps = 3/194 (1%)

Query: 7   IKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVV-NGSTVNLGLWDTAGQE 65
           +K V VGDG  GKTCLL+ Y   +FP +YVPTVF+N+   + V NG  + L LWDTAGQE
Sbjct: 4   VKIVVVGDGGCGKTCLLMVYAQGSFPEEYVPTVFENYVTTLQVPNGKIIELALWDTAGQE 63

Query: 66  DYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLRDD 125
           DY+RLRPLSY   DV ++ +S+ +  S +NV  KW PE+ H+ PG PI+LVG K DLR D
Sbjct: 64  DYDRLRPLSYPDVDVILICYSVDNPTSLDNVEDKWYPEVNHFCPGTPIVLVGLKTDLRKD 123

Query: 126 KQ--FFIDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQQNVKAVFDAAIRVVLQPPKT 183
           K     +   G  P++  QGE + K IGA AYIECS+K  +NV  VFDAAI V L     
Sbjct: 124 KNSVSKLRAQGLEPVTPEQGESVAKSIGAVAYIECSAKLMENVDEVFDAAINVALSKSGR 183

Query: 184 KKKKNKAQKACSIL 197
             +K K +K C IL
Sbjct: 184 AARKKKKKKKCVIL 197

Rho4 is a GTPase that controls septum degradation by regulating secretion of Eng1 or Agn1 during cytokinesis. Rho4 also plays a role in cell morphogenesis. Rho4 regulates septation and cell morphology by controlling the actin cytoskeleton and cytoplasmic microtubules. The localization of Rho4 is modulated by Rdi1, which may function as a GDI, and by Rga9, which is believed to function as a GAP. In S. pombe, both Rho4 deletion and Rho4 overexpression result in a defective cell wall, suggesting a role for Rho4 in maintaining cell wall integrity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Length = 197

>gnl|CDD|133277 cd01875, RhoG, Ras homolog family, member G (RhoG) of small guanosine triphosphatases (GTPases)

 Score =  230 bits (588), Expect = 8e-78
 Identities = 105/183 (57%), Positives = 126/183 (68%), Gaps = 2/183 (1%)

Query: 7   IKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQED 66
           IKCV VGDGAVGKTCLLI YT+N FP +Y+PTVFDN+SA   V+G TV+L LWDTAGQE+
Sbjct: 4   IKCVVVGDGAVGKTCLLICYTTNAFPKEYIPTVFDNYSAQTAVDGRTVSLNLWDTAGQEE 63

Query: 67  YNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLRDDK 126
           Y+RLR LSY   +VFI+ FS+ S +SYENV  KW PE+ H+ P VPI+LVGTK DLR+D 
Sbjct: 64  YDRLRTLSYPQTNVFIICFSIASPSSYENVRHKWHPEVCHHCPNVPILLVGTKKDLRNDA 123

Query: 127 QFF--IDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQQNVKAVFDAAIRVVLQPPKTK 184
                +   G  PI+  QG  L K I A  Y+ECS+  Q  VK VF  A+R VL P   K
Sbjct: 124 DTLKKLKEQGQAPITPQQGGALAKQIHAVKYLECSALNQDGVKEVFAEAVRAVLNPTPIK 183

Query: 185 KKK 187
             K
Sbjct: 184 DTK 186

RhoG is a GTPase with high sequence similarity to members of the Rac subfamily, including the regions involved in effector recognition and binding. However, RhoG does not bind to known Rac1 and Cdc42 effectors, including proteins containing a Cdc42/Rac interacting binding (CRIB) motif. Instead, RhoG interacts directly with Elmo, an upstream regulator of Rac1, in a GTP-dependent manner and forms a ternary complex with Dock180 to induce activation of Rac1. The RhoG-Elmo-Dock180 pathway is required for activation of Rac1 and cell spreading mediated by integrin, as well as for neurite outgrowth induced by nerve growth factor. Thus RhoG activates Rac1 through Elmo and Dock180 to control cell morphology. RhoG has also been shown to play a role in caveolar trafficking and has a novel role in signaling the neutrophil respiratory burst stimulated by G protein-coupled receptor (GPCR) agonists. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Length = 191

>gnl|CDD|206664 cd01874, Cdc42, cell division cycle 42 (Cdc42) is a small GTPase of the Rho family

 Score =  228 bits (583), Expect = 3e-77
 Identities = 96/174 (55%), Positives = 127/174 (72%), Gaps = 2/174 (1%)

Query: 7   IKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQED 66
           IKCV VGDGAVGKTCLLISYT+N FP++YVPTVFDN++  V++ G    LGL+DTAGQED
Sbjct: 2   IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQED 61

Query: 67  YNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLRDDK 126
           Y+RLRPLSY   DVF++ FS++S +S+ENV +KW+PE+ H+ P  P +LVGT++DLRDD 
Sbjct: 62  YDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRDDP 121

Query: 127 QFF--IDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQQNVKAVFDAAIRVVL 178
                +      PI+   GE+L + + A  Y+ECS+ TQ+ +K VFD AI   L
Sbjct: 122 STIEKLAKNKQKPITPETGEKLARDLKAVKYVECSALTQKGLKNVFDEAILAAL 175

Cdc42 is an essential GTPase that belongs to the Rho family of Ras-like GTPases. These proteins act as molecular switches by responding to exogenous and/or endogenous signals and relaying those signals to activate downstream components of a biological pathway. Cdc42 transduces signals to the actin cytoskeleton to initiate and maintain polarized growth and to mitogen-activated protein morphogenesis. In the budding yeast Saccharomyces cerevisiae, Cdc42 plays an important role in multiple actin-dependent morphogenetic events such as bud emergence, mating-projection formation, and pseudohyphal growth. In mammalian cells, Cdc42 regulates a variety of actin-dependent events and induces the JNK/SAPK protein kinase cascade, which leads to the activation of transcription factors within the nucleus. Cdc42 mediates these processes through interactions with a myriad of downstream effectors, whose number and regulation we are just starting to understand. In addition, Cdc42 has been implicated in a number of human diseases through interactions with its regulators and downstream effectors. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 175

>gnl|CDD|133330 cd04130, Wrch_1, Wnt-1 responsive Cdc42 homolog (Wrch-1) is a Rho family GTPase similar to Cdc42

 Score =  226 bits (578), Expect = 2e-76
 Identities = 92/170 (54%), Positives = 126/170 (74%), Gaps = 2/170 (1%)

Query: 7   IKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQED 66
           +KCV VGDGAVGKT L++SYT+N +PT+YVPT FDNFS  V+V+G  V L L DTAGQ++
Sbjct: 1   LKCVLVGDGAVGKTSLIVSYTTNGYPTEYVPTAFDNFSVVVLVDGKPVRLQLCDTAGQDE 60

Query: 67  YNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLRDDK 126
           +++LRPL Y   DVF+L FS+++ +S++N+S+KWIPE++ + P  PIILVGT+ DLR D 
Sbjct: 61  FDKLRPLCYPDTDVFLLCFSVVNPSSFQNISEKWIPEIRKHNPKAPIILVGTQADLRTDV 120

Query: 127 QFFID--HPGAVPISTAQGEELRKLIGAPAYIECSSKTQQNVKAVFDAAI 174
              I     G  P+S ++ + L + IGA  YIECS+ TQ+N+K VFD AI
Sbjct: 121 NVLIQLARYGEKPVSQSRAKALAEKIGACEYIECSALTQKNLKEVFDTAI 170

Wrch-1 (Wnt-1 responsive Cdc42 homolog) is a Rho family GTPase that shares significant sequence and functional similarity with Cdc42. Wrch-1 was first identified in mouse mammary epithelial cells, where its transcription is upregulated in Wnt-1 transformation. Wrch-1 contains N- and C-terminal extensions relative to cdc42, suggesting potential differences in cellular localization and function. The Wrch-1 N-terminal extension contains putative SH3 domain-binding motifs and has been shown to bind the SH3 domain-containing protein Grb2, which increases the level of active Wrch-1 in cells. Unlike Cdc42, which localizes to the cytosol and perinuclear membranes, Wrch-1 localizes extensively with the plasma membrane and endosomes. The membrane association, localization, and biological activity of Wrch-1 indicate an atypical model of regulation distinct from other Rho family GTPases. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 173

>gnl|CDD|215692 pfam00071, Ras, Ras family

 Score =  214 bits (547), Expect = 8e-72
 Identities = 79/174 (45%), Positives = 111/174 (63%), Gaps = 14/174 (8%)

Query: 8   KCVTVGDGAVGKTCLLISYTSNTFPTDYVPTV-FDNFSANVVVNGSTVNLGLWDTAGQED 66
           K V VGDG VGK+ LLI +T N FP +Y+PT+  D ++  + V+G TV L +WDTAGQE 
Sbjct: 1   KLVLVGDGGVGKSSLLIRFTQNKFPEEYIPTIGVDFYTKTIEVDGKTVKLQIWDTAGQER 60

Query: 67  YNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAP-GVPIILVGTKLDLRDD 125
           +  LRPL YRGA  F+L + + S+ S+ENV KKW+ E+  +A   VPI+LVG K DL D 
Sbjct: 61  FRALRPLYYRGAQGFLLVYDITSRDSFENV-KKWLEEILRHADENVPIVLVGNKCDLEDQ 119

Query: 126 KQFFIDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQQNVKAVFDAAIRVVLQ 179
           +           +ST +GE L K +G P ++E S+KT +NV+  F+   R +L+
Sbjct: 120 RV----------VSTEEGEALAKELGLP-FMETSAKTNENVEEAFEELAREILK 162

Includes sub-families Ras, Rab, Rac, Ral, Ran, Rap Ypt1 and more. Shares P-loop motif with GTP_EFTU, arf and myosin_head. See pfam00009 pfam00025, pfam00063. As regards Rab GTPases, these are important regulators of vesicle formation, motility and fusion. They share a fold in common with all Ras GTPases: this is a six-stranded beta-sheet surrounded by five alpha-helices. Length = 162

>gnl|CDD|206707 cd04135, Tc10, Rho GTPase TC10 (Tc10)

 Score =  213 bits (544), Expect = 3e-71
 Identities = 96/174 (55%), Positives = 132/174 (75%), Gaps = 2/174 (1%)

Query: 7   IKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQED 66
           +KCV VGDGAVGKTCLL+SY ++ FP +YVPTVFD+++ +V V G    LGL+DTAGQED
Sbjct: 1   LKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVFDHYAVSVTVGGKQYLLGLYDTAGQED 60

Query: 67  YNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLRDDK 126
           Y+RLRPLSY   DVF++ FS+++ AS++NV ++W+PELK YAP VP +L+GT++DLRDD 
Sbjct: 61  YDRLRPLSYPMTDVFLICFSVVNPASFQNVKEEWVPELKEYAPNVPYLLIGTQIDLRDDP 120

Query: 127 QFF--IDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQQNVKAVFDAAIRVVL 178
           +    ++     PI+  QG++L K IGA  Y+ECS+ TQ+ +K VFD AI  +L
Sbjct: 121 KTLARLNDMKEKPITVEQGQKLAKEIGACCYVECSALTQKGLKTVFDEAIIAIL 174

TC10 is a Rho family protein that has been shown to induce microspike formation and neurite outgrowth in vitro. Its expression changes dramatically after peripheral nerve injury, suggesting an important role in promoting axonal outgrowth and regeneration. TC10 regulates translocation of insulin-stimulated GLUT4 in adipocytes and has also been shown to bind directly to Golgi COPI coat proteins. GTP-bound TC10 in vitro can bind numerous potential effectors. Depending on its subcellular localization and distinct functional domains, TC10 can differentially regulate two types of filamentous actin in adipocytes. TC10 mRNAs are highly expressed in three types of mouse muscle tissues: leg skeletal muscle, cardiac muscle, and uterus; they were also present in brain, with higher levels in adults than in newborns. TC10 has also been shown to play a role in regulating the expression of cystic fibrosis transmembrane conductance regulator (CFTR) through interactions with CFTR-associated ligand (CAL). The GTP-bound form of TC10 directs the trafficking of CFTR from the juxtanuclear region to the secretory pathway toward the plasma membrane, away from CAL-mediated DFTR degradation in the lysosome. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 174

>gnl|CDD|206662 cd01870, RhoA_like, Ras homology family A (RhoA)-like includes RhoA, RhoB and RhoC

 Score =  213 bits (544), Expect = 3e-71
 Identities = 89/173 (51%), Positives = 118/173 (68%), Gaps = 2/173 (1%)

Query: 8   KCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQEDY 67
           K V VGDGA GKTCLLI ++ + FP  YVPTVF+N+ A++ V+G  V L LWDTAGQEDY
Sbjct: 3   KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGQEDY 62

Query: 68  NRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLRDDKQ 127
           +RLRPLSY   DV ++ FS+ S  S EN+ +KW PE+KH+ P VPIILVG K DLR+D+ 
Sbjct: 63  DRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEH 122

Query: 128 FFID--HPGAVPISTAQGEELRKLIGAPAYIECSSKTQQNVKAVFDAAIRVVL 178
              +       P+   +G  + + IGA  Y+ECS+KT++ V+ VF+ A R  L
Sbjct: 123 TIRELAKMKQEPVKPEEGRAMAEKIGAFGYLECSAKTKEGVREVFEMATRAAL 175

The RhoA subfamily consists of RhoA, RhoB, and RhoC. RhoA promotes the formation of stress fibers and focal adhesions, regulating cell shape, attachment, and motility. RhoA can bind to multiple effector proteins, thereby triggering different downstream responses. In many cell types, RhoA mediates local assembly of the contractile ring, which is necessary for cytokinesis. RhoA is vital for muscle contraction; in vascular smooth muscle cells, RhoA plays a key role in cell contraction, differentiation, migration, and proliferation. RhoA activities appear to be elaborately regulated in a time- and space-dependent manner to control cytoskeletal changes. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. RhoA and RhoC are observed only in geranylgeranylated forms; however, RhoB can be present in palmitoylated, farnesylated, and geranylgeranylated forms. RhoA and RhoC are highly relevant for tumor progression and invasiveness; however, RhoB has recently been suggested to be a tumor suppressor. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 175

>gnl|CDD|206702 cd04129, Rho2, Ras homology family 2 (Rho2) of small guanosine triphosphatases (GTPases)

 Score =  186 bits (474), Expect = 2e-60
 Identities = 84/189 (44%), Positives = 112/189 (59%), Gaps = 1/189 (0%)

Query: 8   KCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQEDY 67
           K V VGDGA GKT LL  +T   FP +Y PTVF+N+  +  V+G  V L LWDTAGQE+Y
Sbjct: 3   KLVIVGDGACGKTSLLYVFTLGEFPEEYHPTVFENYVTDCRVDGKPVQLALWDTAGQEEY 62

Query: 68  NRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLRDDKQ 127
            RLRPLSY  A V ++ F++ +  S ENV  KWI E++ Y P VP+ILVG K DLR +  
Sbjct: 63  ERLRPLSYSKAHVILIGFAIDTPDSLENVRTKWIEEVRRYCPNVPVILVGLKKDLRQEAV 122

Query: 128 FFIDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQQNVKAVFDAAIRVVLQPPKTKKKK 187
              ++     +   Q + + + IGA  Y+ECS+ T + V  VF+AA R  L   K+  K+
Sbjct: 123 AKGNYATDEFVPIQQAKLVARAIGAKKYMECSALTGEGVDDVFEAATRAALLVRKS-GKE 181

Query: 188 NKAQKACSI 196
                 C I
Sbjct: 182 EPGANCCII 190

Rho2 is a fungal GTPase that plays a role in cell morphogenesis, control of cell wall integrity, control of growth polarity, and maintenance of growth direction. Rho2 activates the protein kinase C homolog Pck2, and Pck2 controls Mok1, the major (1-3) alpha-D-glucan synthase. Together with Rho1 (RhoA), Rho2 regulates the construction of the cell wall. Unlike Rho1, Rho2 is not an essential protein, but its overexpression is lethal. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for proper intracellular localization via membrane attachment. As with other Rho family GTPases, the GDP/GTP cycling is regulated by GEFs (guanine nucleotide exchange factors), GAPs (GTPase-activating proteins) and GDIs (guanine nucleotide dissociation inhibitors). Length = 190

>gnl|CDD|206640 cd00154, Rab, Ras-related in brain (Rab) family of small guanosine triphosphatases (GTPases)

 Score =  166 bits (423), Expect = 6e-53
 Identities = 67/171 (39%), Positives = 97/171 (56%), Gaps = 14/171 (8%)

Query: 7   IKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNF-SANVVVNGSTVNLGLWDTAGQE 65
            K V +GD  VGKT LL+ +  N F  +Y  T+  +F S  + V+G  V L +WDTAGQE
Sbjct: 1   FKIVLIGDSGVGKTSLLLRFVDNKFSENYKSTIGVDFKSKTIEVDGKKVKLQIWDTAGQE 60

Query: 66  DYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPG-VPIILVGTKLDLRD 124
            +  +    YRGA   IL + + ++ S+EN+  KW+ ELK YAP  +PIILVG K DL D
Sbjct: 61  RFRSITSSYYRGAHGAILVYDVTNRESFENL-DKWLNELKEYAPPNIPIILVGNKSDLED 119

Query: 125 DKQFFIDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQQNVKAVFDAAIR 175
           ++Q          +ST + ++  K  G   + E S+KT +NV   F++  R
Sbjct: 120 ERQ----------VSTEEAQQFAKENGLL-FFETSAKTGENVDEAFESLAR 159

Rab GTPases form the largest family within the Ras superfamily. There are at least 60 Rab genes in the human genome, and a number of Rab GTPases are conserved from yeast to humans. Rab GTPases are small, monomeric proteins that function as molecular switches to regulate vesicle trafficking pathways. The different Rab GTPases are localized to the cytosolic face of specific intracellular membranes, where they regulate distinct steps in membrane traffic pathways. In the GTP-bound form, Rab GTPases recruit specific sets of effector proteins onto membranes. Through their effectors, Rab GTPases regulate vesicle formation, actin- and tubulin-dependent vesicle movement, and membrane fusion. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which mask C-terminal lipid binding and promote cytosolic localization. While most unicellular organisms possess 5-20 Rab members, several have been found to possess 60 or more Rabs; for many of these Rab isoforms, homologous proteins are not found in other organisms. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Since crystal structures often lack C-terminal residues, the lipid modification site is not available for annotation in many of the CDs in the hierarchy, but is included where possible. Length = 159

>gnl|CDD|206706 cd04134, Rho3, Ras homology family 3 (Rho3) of small guanosine triphosphatases (GTPases)

 Score =  165 bits (420), Expect = 2e-52
 Identities = 78/176 (44%), Positives = 105/176 (59%), Gaps = 4/176 (2%)

Query: 8   KCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQEDY 67
           K V +GDGA GKT LL  +T   FP  Y PTVF+N+  ++ V+G  V L LWDTAGQE++
Sbjct: 2   KVVVLGDGACGKTSLLNVFTRGYFPQVYEPTVFENYIHDIFVDGLAVELSLWDTAGQEEF 61

Query: 68  NRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLRDDKQ 127
           +RLR LSY    V +L FS+ +  S ENV  KW+ E++H+ PGV ++LV  K DLR+ + 
Sbjct: 62  DRLRSLSYADTHVIMLCFSVDNPDSLENVESKWLAEIRHHCPGVKLVLVALKCDLREPRN 121

Query: 128 FFIDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQQNVKAVFDAAIRVVL--QPP 181
                     IS  +G  + K I A  Y+ECS+K  + V   F  A RV L  +PP
Sbjct: 122 ERDRGTHT--ISYEEGLAVAKRINACRYLECSAKLNRGVNEAFTEAARVALNARPP 175

Rho3 is a member of the Rho family found only in fungi. Rho3 is believed to regulate cell polarity by interacting with the diaphanous/formin family protein For3 to control both the actin cytoskeleton and microtubules. Rho3 is also believed to have a direct role in exocytosis that is independent of its role in regulating actin polarity. The function in exocytosis may be two-pronged: first, in the transport of post-Golgi vesicles from the mother cell to the bud, mediated by myosin (Myo2); second, in the docking and fusion of vesicles to the plasma membrane, mediated by an exocyst (Exo70) protein. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Length = 185

>gnl|CDD|206703 cd04131, Rnd, Rho family GTPase subfamily Rnd includes Rnd1/Rho6, Rnd2/Rho7, and Rnd3/RhoE/Rho8

 Score =  164 bits (416), Expect = 7e-52
 Identities = 71/170 (41%), Positives = 105/170 (61%), Gaps = 3/170 (1%)

Query: 7   IKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQED 66
            K V VGD   GKT LL  +  ++FP +YVPTVF+N++A+  V+   + L LWDT+G   
Sbjct: 2   CKIVLVGDSQCGKTALLQVFAKDSFPENYVPTVFENYTASFEVDKQRIELSLWDTSGSPY 61

Query: 67  YNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLRDDK 126
           Y+ +RPLSY  +D  ++ F +    + ++V KKW  E++ + P  P++LVG K DLR D 
Sbjct: 62  YDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEVREFCPNTPVLLVGCKSDLRTDL 121

Query: 127 QFFID--HPGAVPISTAQGEELRKLIGAPAYIECSSKTQQN-VKAVFDAA 173
               +  +   +P+S  QG  L K IGA AY+ECS+KT +N V+ VF+ A
Sbjct: 122 STLTELSNKRQIPVSHEQGRNLAKQIGAAAYVECSAKTSENSVRDVFEMA 171

The Rnd subfamily contains Rnd1/Rho6, Rnd2/Rho7, and Rnd3/RhoE/Rho8. These novel Rho family proteins have substantial structural differences compared to other Rho members, including N- and C-terminal extensions relative to other Rhos. Rnd3/RhoE is farnesylated at the C-terminal prenylation site, unlike most other Rho proteins that are geranylgeranylated. In addition, Rnd members are unable to hydrolyze GTP and are resistant to GAP activity. They are believed to exist only in the GTP-bound conformation, and are antagonists of RhoA activity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 176

>gnl|CDD|224025 COG1100, COG1100, GTPase SAR1 and related small G proteins [General function prediction only]

 Score =  148 bits (375), Expect = 4e-45
 Identities = 64/204 (31%), Positives = 103/204 (50%), Gaps = 8/204 (3%)

Query: 2   SASRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSA-NVVVNGSTVNLGLWD 60
              +  K V +GDG VGKT LL     + FP  Y PT+ +   A  +      + L LWD
Sbjct: 1   LFMKEFKIVVLGDGGVGKTTLLNRLVGDEFPEGYPPTIGNLDPAKTIEPYRRNIKLQLWD 60

Query: 61  TAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAP-GVPIILVGTK 119
           TAGQE+Y  LRP  YRGA+  ++ +    + S + ++++W+ EL+  AP  VPI+LVG K
Sbjct: 61  TAGQEEYRSLRPEYYRGANGILIVYDSTLRESSDELTEEWLEELRELAPDDVPILLVGNK 120

Query: 120 LDLRDDKQ----FFIDHPGAVPISTAQGEELRKLIGAPAYIECSSK--TQQNVKAVFDAA 173
           +DL D++             V +     + +   +  PA +E S+K  T  NV  +F   
Sbjct: 121 IDLFDEQSSSEEILNQLNREVVLLVLAPKAVLPEVANPALLETSAKSLTGPNVNELFKEL 180

Query: 174 IRVVLQPPKTKKKKNKAQKACSIL 197
           +R +L+  +    KN+ ++   + 
Sbjct: 181 LRKLLEEIEKLVLKNELRQLDRLN 204

Length = 219

>gnl|CDD|206642 cd00876, Ras, Rat sarcoma (Ras) family of small guanosine triphosphatases (GTPases)

 Score =  142 bits (361), Expect = 1e-43
 Identities = 62/170 (36%), Positives = 98/170 (57%), Gaps = 14/170 (8%)

Query: 8   KCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQEDY 67
           K V +G G VGK+ L I + S  F  +Y PT+ D++   +VV+G T  L + DTAGQE++
Sbjct: 1   KLVVLGAGGVGKSALTIRFVSGEFVEEYDPTIEDSYRKQIVVDGETYTLDILDTAGQEEF 60

Query: 68  NRLRPLSYRGADVFILAFSLISKASYENVS--KKWIPELKHYAPGVPIILVGTKLDLRDD 125
           + +R    R  D FIL +S+ S+ S+E +   ++ I  +K     VPI+LVG K DL ++
Sbjct: 61  SAMRDQYIRNGDGFILVYSITSRESFEEIKNIREQILRVKDKED-VPIVLVGNKCDLENE 119

Query: 126 KQFFIDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQQNVKAVFDAAIR 175
           +Q          +ST +GE L +  G P ++E S+KT  N+  +F+  +R
Sbjct: 120 RQ----------VSTEEGEALAEEWGCP-FLETSAKTNINIDELFNTLVR 158

The Ras family of the Ras superfamily includes classical N-Ras, H-Ras, and K-Ras, as well as R-Ras, Rap, Ral, Rheb, Rhes, ARHI, RERG, Rin/Rit, RSR1, RRP22, Ras2, Ras-dva, and RGK proteins. Ras proteins regulate cell growth, proliferation and differentiation. Ras is activated by guanine nucleotide exchange factors (GEFs) that release GDP and allow GTP binding. Many RasGEFs have been identified. These are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active GTP-bound Ras interacts with several effector proteins: among the best characterized are the Raf kinases, phosphatidylinositol 3-kinase (PI3K), RalGEFs and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 160

>gnl|CDD|197555 smart00175, RAB, Rab subfamily of small GTPases

 Score =  142 bits (361), Expect = 1e-43
 Identities = 60/175 (34%), Positives = 93/175 (53%), Gaps = 14/175 (8%)

Query: 7   IKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVV-VNGSTVNLGLWDTAGQE 65
            K + +GD  VGK+ LL  +T   F   Y  T+  +F    + V+G  V L +WDTAGQE
Sbjct: 1   FKIILIGDSGVGKSSLLSRFTDGKFSEQYKSTIGVDFKTKTIEVDGKRVKLQIWDTAGQE 60

Query: 66  DYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYA-PGVPIILVGTKLDLRD 124
            +  +    YRGA   +L + + ++ S+EN+ + W+ EL+ YA P V I+LVG K DL +
Sbjct: 61  RFRSITSSYYRGAVGALLVYDITNRESFENL-ENWLKELREYASPNVVIMLVGNKSDLEE 119

Query: 125 DKQFFIDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQQNVKAVFDAAIRVVLQ 179
            +Q          +S  + E   +  G P + E S+KT  NV+  F+   R +L+
Sbjct: 120 QRQ----------VSREEAEAFAEEHGLP-FFETSAKTNTNVEEAFEELAREILK 163

Rab GTPases are implicated in vesicle trafficking. Length = 164

>gnl|CDD|206735 cd04172, Rnd3_RhoE_Rho8, Rnd3/RhoE/Rho8 GTPases

 Score =  135 bits (340), Expect = 2e-40
 Identities = 65/169 (38%), Positives = 98/169 (57%), Gaps = 3/169 (1%)

Query: 8   KCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQEDY 67
           K V VGD   GKT LL  +  + FP +YVPTVF+N++A+  ++   + L LWDT+G   Y
Sbjct: 7   KIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYTASFEIDTQRIELSLWDTSGSPYY 66

Query: 68  NRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLRDDKQ 127
           + +RPLSY  +D  ++ F +    + ++V KKW  E++ + P   ++LVG K DLR D  
Sbjct: 67  DNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFCPNTKMLLVGCKSDLRTDVS 126

Query: 128 FFIDHPG--AVPISTAQGEELRKLIGAPAYIECSSKTQQN-VKAVFDAA 173
             ++       P+S  QG  + K IGA  YIECS+   +N V+ +F  A
Sbjct: 127 TLVELSNHRQTPVSYDQGANMAKQIGAATYIECSALQSENSVRDIFHVA 175

Rnd3/RhoE/Rho8 subfamily. Rnd3/RhoE/Rho8 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd2/Rho7. Rnd3/RhoE is known to bind the serine-threonine kinase ROCK I. Unphosphorylated Rnd3/RhoE associates primarily with membranes, but ROCK I-phosphorylated Rnd3/RhoE localizes in the cytosol. Phosphorylation of Rnd3/RhoE correlates with its activity in disrupting RhoA-induced stress fibers and inhibiting Ras-induced fibroblast transformation. In cells that lack stress fibers, such as macrophages and monocytes, Rnd3/RhoE induces a redistribution of actin, causing morphological changes in the cell. In addition, Rnd3/RhoE has been shown to inhibit cell cycle progression in G1 phase at a point upstream of the pRb family pocket protein checkpoint. Rnd3/RhoE has also been shown to inhibit Ras- and Raf-induced fibroblast transformation. In mammary epithelial tumor cells, Rnd3/RhoE regulates the assembly of the apical junction complex and tight junction formation. Rnd3/RhoE is underexpressed in prostate cancer cells both in vitro and in vivo; re-expression of Rnd3/RhoE suppresses cell cycle progression and increases apoptosis, suggesting it may play a role in tumor suppression. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 182

>gnl|CDD|206736 cd04173, Rnd2_Rho7, Rnd2/Rho7 GTPases

 Score =  130 bits (327), Expect = 6e-38
 Identities = 66/193 (34%), Positives = 106/193 (54%), Gaps = 17/193 (8%)

Query: 8   KCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQEDY 67
           K V VGD   GKT LL  +  + +P  YVPTVF+N++A+  ++   + L +WDT+G   Y
Sbjct: 3   KIVVVGDTQCGKTALLHVFAKDNYPESYVPTVFENYTASFEIDKHRIELNMWDTSGSSYY 62

Query: 68  NRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLRDD-- 125
           + +RPL+Y  +D  ++ F +    + ++V KKW  E + + P   ++LVG KLD+R D  
Sbjct: 63  DNVRPLAYPDSDAVLICFDISRPETLDSVLKKWQGETQEFCPNAKLVLVGCKLDMRTDLS 122

Query: 126 ------KQFFIDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQQN-VKAVFDAAIRVVL 178
                 KQ  I      P++  QG  L + +GA AY+ECSS+  +N V+ VF       +
Sbjct: 123 TLRELSKQRLI------PVTHEQGSLLARQLGAVAYVECSSRMSENSVRDVFHVTTLASV 176

Query: 179 Q--PPKTKKKKNK 189
           +   P  K+  ++
Sbjct: 177 RREHPSLKRSTSR 189

Rnd2/Rho7 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd3/RhoE/Rho8. Rnd2/Rho7 is transiently expressed in radially migrating cells in the brain while they are within the subventricular zone of the hippocampus and cerebral cortex. These migrating cells typically develop into pyramidal neurons. Cells that exogenously expressed Rnd2/Rho7 failed to migrate to upper layers of the brain, suggesting that Rnd2/Rho7 plays a role in the radial migration and morphological changes of developing pyramidal neurons, and that Rnd2/Rho7 degradation is necessary for proper cellular migration. The Rnd2/Rho7 GEF Rapostlin is found primarily in the brain and together with Rnd2/Rho7 induces dendrite branching. Unlike Rnd1/Rho6 and Rnd3/RhoE/Rho8, which are RhoA antagonists, Rnd2/Rho7 binds the GEF Pragmin and significantly stimulates RhoA activity and Rho-A mediated cell contraction. Rnd2/Rho7 is also found to be expressed in spermatocytes and early spermatids, with male-germ-cell Rac GTPase-activating protein (MgcRacGAP), where it localizes to the Golgi-derived pro-acrosomal vesicle. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Length = 221

>gnl|CDD|214541 smart00173, RAS, Ras subfamily of RAS small GTPases

 Score =  128 bits (323), Expect = 7e-38
 Identities = 56/172 (32%), Positives = 92/172 (53%), Gaps = 14/172 (8%)

Query: 8   KCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQEDY 67
           K V +G G VGK+ L I +    F  DY PT+ D++   + ++G    L + DTAGQE++
Sbjct: 2   KLVVLGSGGVGKSALTIQFIQGHFVDDYDPTIEDSYRKQIEIDGEVCLLDILDTAGQEEF 61

Query: 68  NRLRPLSYRGADVFILAFSLISKASYENVSK--KWIPELKHYAPGVPIILVGTKLDLRDD 125
           + +R    R  + F+L +S+  + S+E + K  + I  +K     VPI+LVG K DL  +
Sbjct: 62  SAMRDQYMRTGEGFLLVYSITDRQSFEEIKKFREQILRVKDRD-DVPIVLVGNKCDLESE 120

Query: 126 KQFFIDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQQNVKAVFDAAIRVV 177
           +           +ST +G+EL +  G P ++E S+K + NV   F   +R +
Sbjct: 121 RV----------VSTEEGKELARQWGCP-FLETSAKERVNVDEAFYDLVREI 161

Similar in fold and function to the bacterial EF-Tu GTPase. p21Ras couples receptor Tyr kinases and G protein receptors to protein kinase cascades. Length = 164

>gnl|CDD|197466 smart00010, small_GTPase, Small GTPase of the Ras superfamily; ill-defined subfamily

 Score =  126 bits (320), Expect = 3e-37
 Identities = 55/172 (31%), Positives = 94/172 (54%), Gaps = 14/172 (8%)

Query: 8   KCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQEDY 67
           K V +G G VGK+ L I +    F  +Y PT+ D++   + ++G    L + DTAGQE++
Sbjct: 4   KLVVLGGGGVGKSALTIQFVQGHFVDEYDPTIEDSYRKQIEIDGEVCLLDILDTAGQEEF 63

Query: 68  NRLRPLSYRGADVFILAFSLISKASYENVSK--KWIPELKHYAPGVPIILVGTKLDLRDD 125
           + +R    R  + F+L +S+  + S+E ++K  + I  +K     VPI+LVG K DL ++
Sbjct: 64  SAMRDQYMRTGEGFLLVYSITDRQSFEEIAKFREQILRVKDRDD-VPIVLVGNKCDLENE 122

Query: 126 KQFFIDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQQNVKAVFDAAIRVV 177
           +           +ST +G+EL +  G P ++E S+K + NV   F   +R +
Sbjct: 123 RV----------VSTEEGKELARQWGCP-FLETSAKERINVDEAFYDLVREI 163

SMART predicts Ras-like small GTPases of the ARF, RAB, RAN, RAS, and SAR subfamilies. Others that could not be classified in this way are predicted to be members of the small GTPase superfamily without predictions of the subfamily. Length = 166

>gnl|CDD|232886 TIGR00231, small_GTP, small GTP-binding protein domain

 Score =  123 bits (311), Expect = 4e-36
 Identities = 62/169 (36%), Positives = 84/169 (49%), Gaps = 16/169 (9%)

Query: 7   IKCVTVGDGAVGKTCLLISYTSNT-FPTDYVPTVFDNFSANVV-VNGSTVNLGLWDTAGQ 64
           IK V VGD  VGK+ LL     N    T+Y P    N+   V+  +G T    L DTAGQ
Sbjct: 2   IKIVIVGDPNVGKSTLLNRLLGNKISITEYKPGTTRNYVTTVIEEDGKTYKFNLLDTAGQ 61

Query: 65  EDYNRLRPLSYRGADVFILAFSLISKA-SYENVSKKWIPELKHYAP-GVPIILVGTKLDL 122
           EDY+ +R L YR  +  +  F ++      E + +K   E+ H+A  GVPIILVG K+DL
Sbjct: 62  EDYDAIRRLYYRAVESSLRVFDIVILVLDVEEILEKQTKEIIHHAESGVPIILVGNKIDL 121

Query: 123 RDDKQFFIDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQQNVKAVFD 171
           RD K           + T       KL G P  I  S++T +N+ + F 
Sbjct: 122 RDAK-----------LKTHVAFLFAKLNGEP-IIPLSAETGKNIDSAFK 158

Proteins with a small GTP-binding domain recognized by this model include Ras, RhoA, Rab11, translation elongation factor G, translation initiation factor IF-2, tetratcycline resistance protein TetM, CDC42, Era, ADP-ribosylation factors, tdhF, and many others. In some proteins the domain occurs more than once.This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model [Unknown function, General]. Length = 162

>gnl|CDD|133323 cd04123, Rab21, Rab GTPase family 21 (Rab21)

 Score =  122 bits (309), Expect = 1e-35
 Identities = 58/168 (34%), Positives = 91/168 (54%), Gaps = 14/168 (8%)

Query: 7   IKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNF-SANVVVNGSTVNLGLWDTAGQE 65
            K V +G+G VGKT L++ Y  N F   +  T   +F    V + G  ++L +WDTAGQE
Sbjct: 1   FKVVLLGEGRVGKTSLVLRYVENKFNEKHESTTQASFFQKTVNIGGKRIDLAIWDTAGQE 60

Query: 66  DYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYA-PGVPIILVGTKLDLRD 124
            Y+ L P+ YR AD  IL + +    S++ V KKWI ELK      + +++VG K+DL  
Sbjct: 61  RYHALGPIYYRDADGAILVYDITDADSFQKV-KKWIKELKQMRGNNISLVIVGNKIDLER 119

Query: 125 DKQFFIDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQQNVKAVFDA 172
            +           +S ++ EE  K +GA  + E S+KT + ++ +F +
Sbjct: 120 QRV----------VSKSEAEEYAKSVGAK-HFETSAKTGKGIEELFLS 156

The localization and function of Rab21 are not clearly defined, with conflicting data reported. Rab21 has been reported to localize in the ER in human intestinal epithelial cells, with partial colocalization with alpha-glucosidase, a late endosomal/lysosomal marker. More recently, Rab21 was shown to colocalize with and affect the morphology of early endosomes. In Dictyostelium, GTP-bound Rab21, together with two novel LIM domain proteins, LimF and ChLim, has been shown to regulate phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 162

>gnl|CDD|206737 cd04174, Rnd1_Rho6, Rnd1/Rho6 GTPases

 Score =  124 bits (311), Expect = 2e-35
 Identities = 65/184 (35%), Positives = 100/184 (54%), Gaps = 3/184 (1%)

Query: 8   KCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQEDY 67
           K V VGD   GKT +L     + +P  YVPTVF+N++A +      V L LWDT+G   Y
Sbjct: 15  KLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENYTACLETEEQRVELSLWDTSGSPYY 74

Query: 68  NRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLRDDKQ 127
           + +RPL Y  +D  +L F +     +++  KKW  E+  Y P   I+L+G K DLR D  
Sbjct: 75  DNVRPLCYSDSDAVLLCFDISRPEIFDSALKKWRAEILDYCPSTRILLIGCKTDLRTDLS 134

Query: 128 FFID--HPGAVPISTAQGEELRKLIGAPAYIECSSKT-QQNVKAVFDAAIRVVLQPPKTK 184
             ++  +    PIS  QG  + K +GA AY+ECS+ T ++++ ++F  A  + +      
Sbjct: 135 TLMELSNQKQAPISYEQGCAMAKQLGAEAYLECSAFTSEKSIHSIFRTASLLCINKLSPL 194

Query: 185 KKKN 188
            KK+
Sbjct: 195 AKKS 198

Rnd1/Rho6 is a member of the novel Rho subfamily Rnd, together with Rnd2/Rho7 and Rnd3/RhoE/Rho8. Rnd1/Rho6 binds GTP but does not hydrolyze it to GDP, indicating that it is constitutively active. In rat, Rnd1/Rho6 is highly expressed in the cerebral cortex and hippocampus during synapse formation, and plays a role in spine formation. Rnd1/Rho6 is also expressed in the liver and in endothelial cells, and is upregulated in uterine myometrial cells during pregnancy. Like Rnd3/RhoE/Rho8, Rnd1/Rho6 is believed to function as an antagonist to RhoA. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 232

>gnl|CDD|133338 cd04138, H_N_K_Ras_like, Ras GTPase family containing H-Ras,N-Ras and K-Ras4A/4B

 Score =  118 bits (298), Expect = 3e-34
 Identities = 63/170 (37%), Positives = 95/170 (55%), Gaps = 15/170 (8%)

Query: 8   KCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQEDY 67
           K V VG G VGK+ L I    N F  +Y PT+ D++   VV++G T  L + DTAGQE+Y
Sbjct: 3   KLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEY 62

Query: 68  NRLRPLSYRGADVFILAFSLISKASYENVS--KKWIPELKHYAPGVPIILVGTKLDLRDD 125
           + +R    R  + F+  F++ S+ S+E++   ++ I  +K  +  VP++LVG K DL   
Sbjct: 63  SAMRDQYMRTGEGFLCVFAINSRKSFEDIHTYREQIKRVKD-SDDVPMVLVGNKCDLAAR 121

Query: 126 KQFFIDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQQNVKAVFDAAIR 175
                       +ST QG++L K  G P YIE S+KT+Q V+  F   +R
Sbjct: 122 T-----------VSTRQGQDLAKSYGIP-YIETSAKTRQGVEEAFYTLVR 159

H-Ras/N-Ras/K-Ras subfamily. H-Ras, N-Ras, and K-Ras4A/4B are the prototypical members of the Ras family. These isoforms generate distinct signal outputs despite interacting with a common set of activators and effectors, and are strongly associated with oncogenic progression in tumor initiation. Mutated versions of Ras that are insensitive to GAP stimulation (and are therefore constitutively active) are found in a significant fraction of human cancers. Many Ras guanine nucleotide exchange factors (GEFs) have been identified. They are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active (GTP-bound) Ras interacts with several effector proteins that stimulate a variety of diverse cytoplasmic signaling activities. Some are known to positively mediate the oncogenic properties of Ras, including Raf, phosphatidylinositol 3-kinase (PI3K), RalGEFs, and Tiam1. Others are proposed to play negative regulatory roles in oncogenesis, including RASSF and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 162

>gnl|CDD|133275 cd01873, RhoBTB, RhoBTB protein is an atypical member of the Rho family of small GTPases

 Score =  115 bits (289), Expect = 2e-32
 Identities = 82/194 (42%), Positives = 104/194 (53%), Gaps = 28/194 (14%)

Query: 7   IKCVTVGDGAVGKTCLLISYTSNTFPTDY------VPTVF--DNF--------SANVVVN 50
           IKCV VGD AVGKT L+ +   N   T Y      VPTV+  D +         +  VV+
Sbjct: 3   IKCVVVGDNAVGKTRLICARACNKTLTQYQLLATHVPTVWAIDQYRVCQEVLERSRDVVD 62

Query: 51  GSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPG 110
           G +V+L LWDT G  D+++ R  +Y  +DV +L FS+ S  S  NV   W PE++H+ P 
Sbjct: 63  GVSVSLRLWDTFG--DHDKDRRFAYGRSDVVLLCFSIASPNSLRNVKTMWYPEIRHFCPR 120

Query: 111 VPIILVGTKLDLRD---DKQFFIDHPGAVPISTA------QGEELRKLIGAPAYIECSSK 161
           VP+ILVG KLDLR    D+      P A PI  A       G  + K +G P Y E S  
Sbjct: 121 VPVILVGCKLDLRYADLDEVNRARRPLARPIKNADILPPETGRAVAKELGIP-YYETSVV 179

Query: 162 TQQNVKAVFDAAIR 175
           TQ  VK VFD AIR
Sbjct: 180 TQFGVKDVFDNAIR 193

Members of the RhoBTB subfamily of Rho GTPases are present in vertebrates, Drosophila, and Dictyostelium. RhoBTB proteins are characterized by a modular organization, consisting of a GTPase domain, a proline rich region, a tandem of two BTB (Broad-Complex, Tramtrack, and Bric a brac) domains, and a C-terminal region of unknown function. RhoBTB proteins may act as docking points for multiple components participating in signal transduction cascades. RhoBTB genes appeared upregulated in some cancer cell lines, suggesting a participation of RhoBTB proteins in the pathogenesis of particular tumors. Note that the Dictyostelium RacA GTPase domain is more closely related to Rac proteins than to RhoBTB proteins, where RacA actually belongs. Thus, the Dictyostelium RacA is not included here. Most Rho proteins contain a lipid modification site at the C-terminus; however, RhoBTB is one of few Rho subfamilies that lack this feature. Length = 195

>gnl|CDD|206654 cd01861, Rab6, Rab GTPase family 6 (Rab6)

 Score =  113 bits (285), Expect = 3e-32
 Identities = 61/167 (36%), Positives = 90/167 (53%), Gaps = 16/167 (9%)

Query: 8   KCVTVGDGAVGKTCLLISYTSNTFPTDYVPTV-FDNFSANVVVNGSTVNLGLWDTAGQED 66
           K V +GD +VGKT ++  +  +TF   Y  T+  D  S  + V+  TV L LWDTAGQE 
Sbjct: 2   KLVFLGDQSVGKTSIITRFMYDTFDNQYQATIGIDFLSKTMYVDDKTVRLQLWDTAGQER 61

Query: 67  YNRLRPLSY-RGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPII-LVGTKLDLRD 124
           +  L P SY R + V ++ + + ++ S++N   KWI +++       II LVG K DL D
Sbjct: 62  FRSLIP-SYIRDSSVAVVVYDITNRQSFDNT-DKWIDDVRDERGNDVIIVLVGNKTDLSD 119

Query: 125 DKQFFIDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQQNVKAVFD 171
            +Q          +ST +GE+  K   A  +IE S+K   NVK +F 
Sbjct: 120 KRQ----------VSTEEGEKKAKENNA-MFIETSAKAGHNVKQLFK 155

Rab6 is involved in microtubule-dependent transport pathways through the Golgi and from endosomes to the Golgi. Rab6A of mammals is implicated in retrograde transport through the Golgi stack, and is also required for a slow, COPI-independent, retrograde transport pathway from the Golgi to the endoplasmic reticulum (ER). This pathway may allow Golgi residents to be recycled through the ER for scrutiny by ER quality-control systems. Yeast Ypt6p, the homolog of the mammalian Rab6 GTPase, is not essential for cell viability. Ypt6p acts in endosome-to-Golgi, in intra-Golgi retrograde transport, and possibly also in Golgi-to-ER trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 161

>gnl|CDD|240385 PTZ00369, PTZ00369, Ras-like protein; Provisional

 Score =  113 bits (285), Expect = 5e-32
 Identities = 68/200 (34%), Positives = 104/200 (52%), Gaps = 17/200 (8%)

Query: 3   ASRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWDTA 62
           AS   K V VG G VGK+ L I +  N F  +Y PT+ D++    V++  T  L + DTA
Sbjct: 2   ASTEYKLVVVGGGGVGKSALTIQFIQNHFIDEYDPTIEDSYRKQCVIDEETCLLDILDTA 61

Query: 63  GQEDYNRLRPLSYRGADVFILAFSLISKASYE--NVSKKWIPELKHYAPGVPIILVGTKL 120
           GQE+Y+ +R    R    F+  +S+ S++S+E     ++ I  +K     VP+ILVG K 
Sbjct: 62  GQEEYSAMRDQYMRTGQGFLCVYSITSRSSFEEIASFREQILRVKD-KDRVPMILVGNKC 120

Query: 121 DLRDDKQFFIDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQQNVKAVFDAAIRVV--- 177
           DL  ++Q          +ST +G+EL K  G P ++E S+K + NV   F   +R +   
Sbjct: 121 DLDSERQ----------VSTGEGQELAKSFGIP-FLETSAKQRVNVDEAFYELVREIRKY 169

Query: 178 LQPPKTKKKKNKAQKACSIL 197
           L+     +K+ K    C IL
Sbjct: 170 LKEDMPSQKQKKKGGLCLIL 189

Length = 189

>gnl|CDD|206653 cd01860, Rab5_related, Rab-related GTPase family includes Rab5 and Rab22; regulates early endosome fusion

 Score =  110 bits (278), Expect = 3e-31
 Identities = 56/169 (33%), Positives = 88/169 (52%), Gaps = 18/169 (10%)

Query: 8   KCVTVGDGAVGKTCLLISYTSNTFPTDYVPTV---FDNFSANVVVNGSTVNLGLWDTAGQ 64
           K V +GD +VGK+ +++ +  N F  +   T+   F   +  V ++ +TV   +WDTAGQ
Sbjct: 3   KLVLLGDSSVGKSSIVLRFVKNEFSENQESTIGAAF--LTQTVNLDDTTVKFEIWDTAGQ 60

Query: 65  EDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELK-HYAPGVPIILVGTKLDLR 123
           E Y  L P+ YRGA   I+ + + S+ S+E   K W+ EL+ H  P + I L G K DL 
Sbjct: 61  ERYRSLAPMYYRGAAAAIVVYDITSEESFEKA-KSWVKELQEHGPPNIVIALAGNKADLE 119

Query: 124 DDKQFFIDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQQNVKAVFDA 172
             +Q          +ST + +E     G   ++E S+KT +NV  +F  
Sbjct: 120 SKRQ----------VSTEEAQEYADENG-LLFMETSAKTGENVNELFTE 157

The Rab5-related subfamily includes Rab5 and Rab22 of mammals, Ypt51/Ypt52/Ypt53 of yeast, and RabF of plants. The members of this subfamily are involved in endocytosis and endocytic-sorting pathways. In mammals, Rab5 GTPases localize to early endosomes and regulate fusion of clathrin-coated vesicles to early endosomes and fusion between early endosomes. In yeast, Ypt51p family members similarly regulate membrane trafficking through prevacuolar compartments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 163

>gnl|CDD|206661 cd01869, Rab1_Ypt1, Rab GTPase family 1 includes the yeast homolog Ypt1

 Score =  110 bits (276), Expect = 8e-31
 Identities = 55/165 (33%), Positives = 88/165 (53%), Gaps = 14/165 (8%)

Query: 8   KCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVV-VNGSTVNLGLWDTAGQED 66
           K + +GD  VGK+CLL+ +  +T+   Y+ T+  +F    + ++G TV L +WDTAGQE 
Sbjct: 4   KLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTVKLQIWDTAGQER 63

Query: 67  YNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAP-GVPIILVGTKLDLRDD 125
           +  +    YRGA   I+ + +  + S+ NV K+W+ E+  YA   V  +LVG K DL D 
Sbjct: 64  FRTITSSYYRGAHGIIIVYDVTDQESFNNV-KQWLQEIDRYASENVNKLLVGNKCDLTDK 122

Query: 126 KQFFIDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQQNVKAVF 170
           K           +   + +E    +G P ++E S+K   NV+  F
Sbjct: 123 KV----------VDYTEAKEFADELGIP-FLETSAKNATNVEEAF 156

Rab1/Ypt1 subfamily. Rab1 is found in every eukaryote and is a key regulatory component for the transport of vesicles from the ER to the Golgi apparatus. Studies on mutations of Ypt1, the yeast homolog of Rab1, showed that this protein is necessary for the budding of vesicles of the ER as well as for their transport to, and fusion with, the Golgi apparatus. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 166

>gnl|CDD|206659 cd01867, Rab8_Rab10_Rab13_like, Rab GTPase families 8, 10, 13 (Rab8, Rab10, Rab13)

 Score =  109 bits (275), Expect = 1e-30
 Identities = 51/175 (29%), Positives = 92/175 (52%), Gaps = 14/175 (8%)

Query: 7   IKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFS-ANVVVNGSTVNLGLWDTAGQE 65
            K + +GD  VGK+CLL+ ++ ++F   ++ T+  +F    + ++G  + L +WDTAGQE
Sbjct: 4   FKLLLIGDSGVGKSCLLLRFSEDSFNPSFISTIGIDFKIRTIELDGKKIKLQIWDTAGQE 63

Query: 66  DYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYA-PGVPIILVGTKLDLRD 124
            +  +    YRGA   IL + +  + S+EN+ K W+  +  +A   V  +LVG K D+ +
Sbjct: 64  RFRTITTSYYRGAMGIILVYDITDEKSFENI-KNWMRNIDEHASEDVERMLVGNKCDMEE 122

Query: 125 DKQFFIDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQQNVKAVFDAAIRVVLQ 179
            +           +S  +GE L +  G   ++E S+K   NV+  F    + +L+
Sbjct: 123 KRV----------VSKEEGEALAREYGIK-FLETSAKANINVEEAFLTLAKDILK 166

Rab8/Sec4/Ypt2 are known or suspected to be involved in post-Golgi transport to the plasma membrane. It is likely that these Rabs have functions that are specific to the mammalian lineage and have no orthologs in plants. Rab8 modulates polarized membrane transport through reorganization of actin and microtubules, induces the formation of new surface extensions, and has an important role in directed membrane transport to cell surfaces. The Ypt2 gene of the fission yeast Schizosaccharomyces pombe encodes a member of the Ypt/Rab family of small GTP-binding proteins, related in sequence to Sec4p of Saccharomyces cerevisiae but closer to mammalian Rab8. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 167

>gnl|CDD|206656 cd01863, Rab18, Rab GTPase family 18 (Rab18)

 Score =  108 bits (271), Expect = 4e-30
 Identities = 52/172 (30%), Positives = 88/172 (51%), Gaps = 16/172 (9%)

Query: 7   IKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNF-SANVVVNGSTVNLGLWDTAGQE 65
           +K + +GD  VGK+ LL+ +T +TF  D   T+  +F    V V+G  V L +WDTAGQE
Sbjct: 1   LKILLIGDSGVGKSSLLLRFTDDTFDEDLSSTIGVDFKVKTVTVDGKKVKLAIWDTAGQE 60

Query: 66  DYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYA--PGVPIILVGTKLDLR 123
            +  L    YRGA   IL + +  + +++N+   W+ EL  Y+  P    +LVG K+D  
Sbjct: 61  RFRTLTSSYYRGAQGVILVYDVTRRDTFDNL-DTWLNELDTYSTNPDAVKMLVGNKIDKE 119

Query: 124 DDKQFFIDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQQNVKAVFDAAIR 175
           +             ++  +G++  +      +IE S+KT+  V+  F+  + 
Sbjct: 120 N-----------REVTREEGQKFARKHNML-FIETSAKTRIGVQQAFEELVE 159

Rab18 subfamily. Mammalian Rab18 is implicated in endocytic transport and is expressed most highly in polarized epithelial cells. However, trypanosomal Rab, TbRAB18, is upregulated in the BSF (Blood Stream Form) stage and localized predominantly to elements of the Golgi complex. In human and mouse cells, Rab18 has been identified in lipid droplets, organelles that store neutral lipids. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 161

>gnl|CDD|133306 cd04106, Rab23_like, Rab GTPase family 23 (Rab23)-like

 Score =  107 bits (268), Expect = 1e-29
 Identities = 54/168 (32%), Positives = 84/168 (50%), Gaps = 15/168 (8%)

Query: 7   IKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNF-SANVVVN--GSTVNLGLWDTAG 63
           IK + VG+G VGK+ ++  +    F  DY  T+  +F    + +      V L LWDTAG
Sbjct: 1   IKVIVVGNGNVGKSSMIQRFVKGIFTKDYKKTIGVDFLEKQIFLRQSDEDVRLMLWDTAG 60

Query: 64  QEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLR 123
           QE+++ +    YRGA   IL FS   + S+E +   W  +++     +P++LV TK+DL 
Sbjct: 61  QEEFDAITKAYYRGAQACILVFSTTDRESFEAIE-SWKEKVEAECGDIPMVLVQTKIDLL 119

Query: 124 DDKQFFIDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQQNVKAVFD 171
           D          AV I+  + E L K +  P +   S K   NV  +F+
Sbjct: 120 DQ---------AV-ITNEEAEALAKRLQLPLF-RTSVKDDFNVTELFE 156

Rab23-like subfamily. Rab23 is a member of the Rab family of small GTPases. In mouse, Rab23 has been shown to function as a negative regulator in the sonic hedgehog (Shh) signaling pathway. Rab23 mediates the activity of Gli2 and Gli3, transcription factors that regulate Shh signaling in the spinal cord, primarily by preventing Gli2 activation in the absence of Shh ligand. Rab23 also regulates a step in the cytoplasmic signal transduction pathway that mediates the effect of Smoothened (one of two integral membrane proteins that are essential components of the Shh signaling pathway in vertebrates). In humans, Rab23 is expressed in the retina. Mice contain an isoform that shares 93% sequence identity with the human Rab23 and an alternative splicing isoform that is specific to the brain. This isoform causes the murine open brain phenotype, indicating it may have a role in the development of the central nervous system. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 162

>gnl|CDD|133345 cd04145, M_R_Ras_like, R-Ras2/TC21, M-Ras/R-Ras3

 Score =  106 bits (267), Expect = 1e-29
 Identities = 61/175 (34%), Positives = 92/175 (52%), Gaps = 14/175 (8%)

Query: 5   RFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQ 64
              K V VG G VGK+ L I +  + F TDY PT+ D+++    ++G    L + DTAGQ
Sbjct: 1   PTYKLVVVGGGGVGKSALTIQFIQSYFVTDYDPTIEDSYTKQCEIDGQWARLDILDTAGQ 60

Query: 65  EDYNRLRPLSYRGADVFILAFSLISKASYENVSK--KWIPELKHYAPGVPIILVGTKLDL 122
           E+++ +R    R  + F+L FS+  + S+E V K    I  +K      P+ILVG K DL
Sbjct: 61  EEFSAMREQYMRTGEGFLLVFSVTDRGSFEEVDKFHTQILRVKDRDE-FPMILVGNKADL 119

Query: 123 RDDKQFFIDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQQNVKAVFDAAIRVV 177
              +Q          +S  +G+EL + +  P YIE S+K + NV   F   +RV+
Sbjct: 120 EHQRQ----------VSREEGQELARQLKIP-YIETSAKDRVNVDKAFHDLVRVI 163

The M-Ras/R-Ras-like subfamily contains R-Ras2/TC21, M-Ras/R-Ras3, and related members of the Ras family. M-Ras is expressed in lympho-hematopoetic cells. It interacts with some of the known Ras effectors, but appears to also have its own effectors. Expression of mutated M-Ras leads to transformation of several types of cell lines, including hematopoietic cells, mammary epithelial cells, and fibroblasts. Overexpression of M-Ras is observed in carcinomas from breast, uterus, thyroid, stomach, colon, kidney, lung, and rectum. In addition, expression of a constitutively active M-Ras mutant in murine bone marrow induces a malignant mast cell leukemia that is distinct from the monocytic leukemia induced by H-Ras. TC21, along with H-Ras, has been shown to regulate the branching morphogenesis of ureteric bud cell branching in mice. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 164

>gnl|CDD|133344 cd04144, Ras2, Rat sarcoma (Ras) family 2 of small guanosine triphosphatases (GTPases)

 Score =  106 bits (267), Expect = 3e-29
 Identities = 71/201 (35%), Positives = 106/201 (52%), Gaps = 22/201 (10%)

Query: 8   KCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQEDY 67
           K V +GDG VGKT L I    N F   Y PT+ D++   VVV+G    L + DTAGQE+Y
Sbjct: 1   KLVVLGDGGVGKTALTIQLCLNHFVETYDPTIEDSYRKQVVVDGQPCMLEVLDTAGQEEY 60

Query: 68  NRLRPLSYRGADVFILAFSLISKASYENVSK--KWIPELKHYAPG-VPIILVGTKLDLRD 124
             LR    R  + FIL +S+ S++++E V +  + I  +K  +   VPI++VG K D   
Sbjct: 61  TALRDQWIREGEGFILVYSITSRSTFERVERFREQIQRVKDESAADVPIMIVGNKCDKVY 120

Query: 125 DKQFFIDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQQNVKAVFDAAIRVVL------ 178
           +++          +ST +G  L + +G   +IE S+KT  NV+  F   +R +       
Sbjct: 121 ERE----------VSTEEGAALARRLGC-EFIEASAKTNVNVERAFYTLVRALRQQRQGG 169

Query: 179 QPPKT--KKKKNKAQKACSIL 197
           Q PK    KKK K ++ C I+
Sbjct: 170 QGPKGGPTKKKEKKKRKCVIM 190

The Ras2 subfamily, found exclusively in fungi, was first identified in Ustilago maydis. In U. maydis, Ras2 is regulated by Sql2, a protein that is homologous to GEFs (guanine nucleotide exchange factors) of the CDC25 family. Ras2 has been shown to induce filamentous growth, but the signaling cascade through which Ras2 and Sql2 regulate cell morphology is not known. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Length = 190

>gnl|CDD|206700 cd04127, Rab27A, Rab GTPase family 27a (Rab27a)

 Score =  105 bits (264), Expect = 6e-29
 Identities = 63/186 (33%), Positives = 91/186 (48%), Gaps = 25/186 (13%)

Query: 7   IKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGST-----------VN 55
           IK + +GD  VGKT  L  YT N F   ++ TV  +F    VV  S            V+
Sbjct: 5   IKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYNSQGPDGTSGKAFRVH 64

Query: 56  LGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKH--YAPGVPI 113
           L LWDTAGQE +  L    +R A  F+L F L S+ S+ NV + W+ +L+   Y     I
Sbjct: 65  LQLWDTAGQERFRSLTTAFFRDAMGFLLMFDLTSEQSFLNV-RNWMSQLQAHAYCENPDI 123

Query: 114 ILVGTKLDLRDDKQFFIDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQQNVKAVFDAA 173
           +L+G K DL D ++          +S  Q  EL    G P Y E S+ T QNV+   +  
Sbjct: 124 VLIGNKADLPDQRE----------VSERQARELADKYGIP-YFETSAATGQNVEKAVETL 172

Query: 174 IRVVLQ 179
           + ++++
Sbjct: 173 LDLIMK 178

The Rab27a subfamily consists of Rab27a and its highly homologous isoform, Rab27b. Unlike most Rab proteins whose functions remain poorly defined, Rab27a has many known functions. Rab27a has multiple effector proteins, and depending on which effector it binds, Rab27a has different functions as well as tissue distribution and/or cellular localization. Putative functions have been assigned to Rab27a when associated with the effector proteins Slp1, Slp2, Slp3, Slp4, Slp5, DmSlp, rabphilin, Dm/Ce-rabphilin, Slac2-a, Slac2-b, Slac2-c, Noc2, JFC1, and Munc13-4. Rab27a has been associated with several human diseases, including hemophagocytic syndrome (Griscelli syndrome or GS), Hermansky-Pudlak syndrome, and choroidermia. In the case of GS, a rare, autosomal recessive disease, a Rab27a mutation is directly responsible for the disorder. When Rab27a is localized to the secretory granules of pancreatic beta cells, it is believed to mediate glucose-stimulated insulin secretion, making it a potential target for diabetes therapy. When bound to JFC1 in prostate cells, Rab27a is believed to regulate the exocytosis of prostate- specific markers. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 180

>gnl|CDD|133267 cd01864, Rab19, Rab GTPase family 19 (Rab19)

 Score =  103 bits (259), Expect = 3e-28
 Identities = 51/165 (30%), Positives = 86/165 (52%), Gaps = 13/165 (7%)

Query: 8   KCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSA-NVVVNGSTVNLGLWDTAGQED 66
           K + +GD  VGKTC++  + S TF      T+  +F+   + + G  V L +WDTAGQE 
Sbjct: 5   KIILIGDSNVGKTCVVQRFKSGTFSERQGNTIGVDFTMKTLEIQGKRVKLQIWDTAGQER 64

Query: 67  YNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHY-APGVPIILVGTKLDLRDD 125
           +  +    YR A+  I+A+ +  ++S+E+V   WI E++ Y A  V ++L+G K DL + 
Sbjct: 65  FRTITQSYYRSANGAIIAYDITRRSSFESVP-HWIEEVEKYGASNVVLLLIGNKCDLEEQ 123

Query: 126 KQFFIDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQQNVKAVF 170
           ++          +   +   L +  G  A +E S+K   NV+  F
Sbjct: 124 RE----------VLFEEACTLAEHYGILAVLETSAKESSNVEEAF 158

Rab19 subfamily. Rab19 proteins are associated with Golgi stacks. Similarity analysis indicated that Rab41 is closely related to Rab19. However, the function of these Rabs is not yet characterized. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 165

>gnl|CDD|206709 cd04137, RheB, Ras Homolog Enriched in Brain (RheB) is a small GTPase

 Score =  103 bits (259), Expect = 5e-28
 Identities = 58/192 (30%), Positives = 97/192 (50%), Gaps = 18/192 (9%)

Query: 8   KCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQEDY 67
           K   +G  +VGK+ L + +    F   Y PT+ + FS  +   G   +L + DTAGQ++Y
Sbjct: 3   KIAVLGSRSVGKSSLTVQFVEGHFVESYYPTIENTFSKIITYKGQEYHLEIVDTAGQDEY 62

Query: 68  NRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHY-APGVPIILVGTKLDLRDDK 126
           + L      G   +IL +S+ S+ S+E V   +   L       VPI+LVG K DL  ++
Sbjct: 63  SILPQKYSIGIHGYILVYSVTSRKSFEVVKVIYDKILDMLGKESVPIVLVGNKSDLHMER 122

Query: 127 QFFIDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQQNVKAVFDAAIRVV--LQPPKTK 184
           Q          +S  +G++L +  GA A++E S+K  +NV+  F+  I  +  ++ P   
Sbjct: 123 Q----------VSAEEGKKLAESWGA-AFLESSAKENENVEEAFELLIEEIEKVENPLPP 171

Query: 185 KKKNKAQKACSI 196
            +K+K    CS+
Sbjct: 172 GQKSK----CSV 179

Rheb (Ras Homolog Enriched in Brain) subfamily. Rheb was initially identified in rat brain, where its expression is elevated by seizures or by long-term potentiation. It is expressed ubiquitously, with elevated levels in muscle and brain. Rheb functions as an important mediator between the tuberous sclerosis complex proteins, TSC1 and TSC2, and the mammalian target of rapamycin (TOR) kinase to stimulate cell growth. TOR kinase regulates cell growth by controlling nutrient availability, growth factors, and the energy status of the cell. TSC1 and TSC2 form a dimeric complex that has tumor suppressor activity, and TSC2 is a GTPase activating protein (GAP) for Rheb. The TSC1/TSC2 complex inhibits the activation of TOR kinase through Rheb. Rheb has also been shown to induce the formation of large cytoplasmic vacuoles in a process that is dependent on the GTPase cycle of Rheb, but independent of the TOR kinase, suggesting Rheb plays a role in endocytic trafficking that leads to cell growth and cell-cycle progression. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Length = 180

>gnl|CDD|133376 cd04176, Rap2, Rap2 family GTPase consists of Rap2a, Rap2b, and Rap2c

 Score =  100 bits (251), Expect = 3e-27
 Identities = 54/170 (31%), Positives = 93/170 (54%), Gaps = 14/170 (8%)

Query: 8   KCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQEDY 67
           K V +G G VGK+ L + + S TF   Y PT+ D +   + V+ S   L + DTAG E +
Sbjct: 3   KVVVLGSGGVGKSALTVQFVSGTFIEKYDPTIEDFYRKEIEVDSSPSVLEILDTAGTEQF 62

Query: 68  NRLRPLSYRGADVFILAFSLISKASYENVS--KKWIPELKHYAPGVPIILVGTKLDLRDD 125
             +R L  +    FI+ +SL+++ +++++   +  I  +K Y   VPIILVG K+DL  +
Sbjct: 63  ASMRDLYIKNGQGFIVVYSLVNQQTFQDIKPMRDQIVRVKGYEK-VPIILVGNKVDLESE 121

Query: 126 KQFFIDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQQNVKAVFDAAIR 175
           ++          +S+A+G  L +  G P ++E S+K++  V  +F   +R
Sbjct: 122 RE----------VSSAEGRALAEEWGCP-FMETSAKSKTMVNELFAEIVR 160

The Rap2 subgroup is part of the Rap subfamily of the Ras family. It consists of Rap2a, Rap2b, and Rap2c. Both isoform 3 of the human mitogen-activated protein kinase kinase kinase kinase 4 (MAP4K4) and Traf2- and Nck-interacting kinase (TNIK) are putative effectors of Rap2 in mediating the activation of c-Jun N-terminal kinase (JNK) to regulate the actin cytoskeleton. In human platelets, Rap2 was shown to interact with the cytoskeleton by binding the actin filaments. In embryonic Xenopus development, Rap2 is necessary for the Wnt/beta-catenin signaling pathway. The Rap2 interacting protein 9 (RPIP9) is highly expressed in human breast carcinomas and correlates with a poor prognosis, suggesting a role for Rap2 in breast cancer oncogenesis. Rap2b, but not Rap2a, Rap2c, Rap1a, or Rap1b, is expressed in human red blood cells, where it is believed to be involved in vesiculation. A number of additional effector proteins for Rap2 have been identified, including the RalGEFs RalGDS, RGL, and Rlf, which also interact with Rap1 and Ras. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 163

>gnl|CDD|206660 cd01868, Rab11_like, Rab GTPase family 11 (Rab11)-like includes Rab11a, Rab11b, and Rab25

 Score = 99.6 bits (249), Expect = 1e-26
 Identities = 54/165 (32%), Positives = 86/165 (52%), Gaps = 14/165 (8%)

Query: 8   KCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSA-NVVVNGSTVNLGLWDTAGQED 66
           K V +GD  VGK+ LL  +T N F  D   T+   F+   + ++G T+   +WDTAGQE 
Sbjct: 5   KIVLIGDSGVGKSNLLSRFTRNEFNLDSKSTIGVEFATRTIQIDGKTIKAQIWDTAGQER 64

Query: 67  YNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPG-VPIILVGTKLDLRDD 125
           Y  +    YRGA   +L + +  K+++ENV  +W+ EL+ +A   + I+LVG K DLR  
Sbjct: 65  YRAITSAYYRGAVGALLVYDITKKSTFENVE-RWLKELRDHADSNIVIMLVGNKSDLRHL 123

Query: 126 KQFFIDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQQNVKAVF 170
           +           + T + +   +  G  ++IE S+    NV+  F
Sbjct: 124 RA----------VPTEEAKAFAEKNGL-SFIETSALDGTNVEEAF 157

Rab11a, Rab11b, and Rab25 are closely related, evolutionary conserved Rab proteins that are differentially expressed. Rab11a is ubiquitously synthesized, Rab11b is enriched in brain and heart and Rab25 is only found in epithelia. Rab11/25 proteins seem to regulate recycling pathways from endosomes to the plasma membrane and to the trans-Golgi network. Furthermore, Rab11a is thought to function in the histamine-induced fusion of tubulovesicles containing H+, K+ ATPase with the plasma membrane in gastric parietal cells and in insulin-stimulated insertion of GLUT4 in the plasma membrane of cardiomyocytes. Overexpression of Rab25 has recently been observed in ovarian cancer and breast cancer, and has been correlated with worsened outcomes in both diseases. In addition, Rab25 overexpression has also been observed in prostate cancer, transitional cell carcinoma of the bladder, and invasive breast tumor cells. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 165

>gnl|CDD|206710 cd04139, RalA_RalB, Ral (Ras-like) family containing highly homologous RalA and RalB

 Score = 99.0 bits (247), Expect = 1e-26
 Identities = 59/173 (34%), Positives = 90/173 (52%), Gaps = 12/173 (6%)

Query: 8   KCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQEDY 67
           K + VG G VGK+ L + +  + F  DY PT  D++   VV++G  V L + DTAGQEDY
Sbjct: 2   KVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEEVQLNILDTAGQEDY 61

Query: 68  NRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYA-PGVPIILVGTKLDLRDDK 126
             +R   +R  + F+L FS+    S+  +++     L+      VP++LVG K DL D +
Sbjct: 62  AAIRDNYFRSGEGFLLVFSITDMESFTALAEFREQILRVKEDDNVPLLLVGNKCDLEDKR 121

Query: 127 QFFIDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQQNVKAVFDAAIRVVLQ 179
           Q          +S  +   L +  G   Y+E S+KT+ NV  VF   +R + Q
Sbjct: 122 Q----------VSVEEAANLAEQWGVN-YVETSAKTRANVDKVFFDLVREIRQ 163

The Ral (Ras-like) subfamily consists of the highly homologous RalA and RalB. Ral proteins are believed to play a crucial role in tumorigenesis, metastasis, endocytosis, and actin cytoskeleton dynamics. Despite their high sequence similarity (>80% sequence identity), nonoverlapping and opposing functions have been assigned to RalA and RalBs in tumor migration. In human bladder and prostate cancer cells, RalB promotes migration while RalA inhibits it. A Ral-specific set of GEFs has been identified that are activated by Ras binding. This RalGEF activity is enhanced by Ras binding to another of its target proteins, phosphatidylinositol 3-kinase (PI3K). Ral effectors include RLIP76/RalBP1, a Rac/cdc42 GAP, and the exocyst (Sec6/8) complex, a heterooctomeric protein complex that is involved in tethering vesicles to specific sites on the plasma membrane prior to exocytosis. In rat kidney cells, RalB is required for functional assembly of the exocyst and for localizing the exocyst to the leading edge of migrating cells. In human cancer cells, RalA is required to support anchorage-independent proliferation and RalB is required to suppress apoptosis. RalA has been shown to localize to the plasma membrane while RalB is localized to the intracellular vesicles. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 163

>gnl|CDD|206697 cd04116, Rab9, Rab GTPase family 9 (Rab9)

 Score = 99.2 bits (247), Expect = 2e-26
 Identities = 60/180 (33%), Positives = 94/180 (52%), Gaps = 18/180 (10%)

Query: 4   SRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNF-SANVVVNGSTVNLGLWDTA 62
           S  +K + +GDG VGK+ L+  Y +N F T    T+   F + ++ V+G  V L +WDTA
Sbjct: 3   SSLLKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTLQIWDTA 62

Query: 63  GQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYA-----PGVPIILVG 117
           GQE +  LR   YRG+D  +L FS+    S++N+S  W  E  +YA        P +++G
Sbjct: 63  GQERFRSLRTPFYRGSDCCLLTFSVDDSQSFQNLS-NWKKEFIYYADVKEPESFPFVILG 121

Query: 118 TKLDLRDDKQFFIDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQQNVKAVFDAAIRVV 177
            K+D+ + +           +ST + +   +  G   Y E S+K   NV A F+ A+R V
Sbjct: 122 NKIDIPERQ-----------VSTEEAQAWCRDNGDYPYFETSAKDATNVAAAFEEAVRRV 170

Rab9 is found in late endosomes, together with mannose 6-phosphate receptors (MPRs) and the tail-interacting protein of 47 kD (TIP47). Rab9 is a key mediator of vesicular transport from late endosomes to the trans-Golgi network (TGN) by redirecting the MPRs. Rab9 has been identified as a key component for the replication of several viruses, including HIV1, Ebola, Marburg, and measles, making it a potential target for inhibiting a variety of viruses. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 170

>gnl|CDD|206698 cd04117, Rab15, Rab GTPase family 15 (Rab15)

 Score = 98.5 bits (245), Expect = 3e-26
 Identities = 59/170 (34%), Positives = 89/170 (52%), Gaps = 14/170 (8%)

Query: 12  VGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVV-VNGSTVNLGLWDTAGQEDYNRL 70
           +GD  VGKTCLL  +T N F + ++ T+  +F    + V+G  V + +WDTAGQE Y  +
Sbjct: 6   IGDSGVGKTCLLCRFTDNEFHSSHISTIGVDFKMKTIEVDGIKVRIQIWDTAGQERYQTI 65

Query: 71  RPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAP-GVPIILVGTKLDLRDDKQFF 129
               YR A    L + + S+ SY+++  KW+ ++  YAP GV  IL+G K D    +Q  
Sbjct: 66  TKQYYRRAQGIFLVYDISSERSYQHI-MKWVSDVDEYAPEGVQKILIGNKADEEQKRQ-- 122

Query: 130 IDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQQNVKAVFDAAIRVVLQ 179
                   +   QG +L K  G   + E S+ T +N+K  F     +VLQ
Sbjct: 123 --------VGDEQGNKLAKEYGMD-FFETSACTNKNIKESFTRLTELVLQ 163

Rab15 colocalizes with the transferrin receptor in early endosome compartments, but not with late endosomal markers. It codistributes with Rab4 and Rab5 on early/sorting endosomes, and with Rab11 on pericentriolar recycling endosomes. It is believed to function as an inhibitory GTPase that regulates distinct steps in early endocytic trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 164

>gnl|CDD|206696 cd04113, Rab4, Rab GTPase family 4 (Rab4)

 Score = 96.7 bits (241), Expect = 9e-26
 Identities = 56/172 (32%), Positives = 86/172 (50%), Gaps = 14/172 (8%)

Query: 8   KCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVV-VNGSTVNLGLWDTAGQED 66
           K + +G    GK+CLL  +  N F  D   T+   F + VV V G +V L +WDTAGQE 
Sbjct: 2   KFLIIGSAGTGKSCLLHQFIENKFKQDSNHTIGVEFGSRVVNVGGKSVKLQIWDTAGQER 61

Query: 67  YNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYA-PGVPIILVGTKLDLRDD 125
           +  +    YRGA   +L + + S+ S+  ++  W+ + +  A P + IILVG K DL DD
Sbjct: 62  FRSVTRSYYRGAAGALLVYDITSRESFNALT-NWLTDARTLASPDIVIILVGNKKDLEDD 120

Query: 126 KQFFIDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQQNVKAVFDAAIRVV 177
           ++  +    A     AQ   L        ++E S+ T +NV+  F    R +
Sbjct: 121 RE--VTFLEASRF--AQENGLL-------FLETSALTGENVEEAFLKCARSI 161

Rab4 subfamily. Rab4 has been implicated in numerous functions within the cell. It helps regulate endocytosis through the sorting, recycling, and degradation of early endosomes. Mammalian Rab4 is involved in the regulation of many surface proteins including G-protein-coupled receptors, transferrin receptor, integrins, and surfactant protein A. Experimental data implicate Rab4 in regulation of the recycling of internalized receptors back to the plasma membrane. It is also believed to influence receptor-mediated antigen processing in B-lymphocytes, in calcium-dependent exocytosis in platelets, in alpha-amylase secretion in pancreatic cells, and in insulin-induced translocation of Glut4 from internal vesicles to the cell surface. Rab4 is known to share effector proteins with Rab5 and Rab11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 161

>gnl|CDD|206655 cd01862, Rab7, Rab GTPase family 7 (Rab7)

 Score = 96.6 bits (241), Expect = 2e-25
 Identities = 56/178 (31%), Positives = 86/178 (48%), Gaps = 17/178 (9%)

Query: 8   KCVTVGDGAVGKTCLLISYTSNTFPTDYVPTV-FDNFSANVVVNGSTVNLGLWDTAGQED 66
           K + +GD  VGKT L+  Y +  F   Y  T+  D  +  V V+   V L +WDTAGQE 
Sbjct: 2   KVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVTVDDRLVTLQIWDTAGQER 61

Query: 67  YNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYA----PG-VPIILVGTKLD 121
           +  L    YRGAD  +L + + +  S+E++   W  E    A    P   P +++G K+D
Sbjct: 62  FQSLGVAFYRGADCCVLVYDVTNPKSFESL-DSWRDEFLIQASPRDPENFPFVVLGNKID 120

Query: 122 LRDDKQFFIDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQQNVKAVFDAAIRVVLQ 179
           L + +Q          +ST + ++  K  G   Y E S+K   NV   F+   R+ L+
Sbjct: 121 LEEKRQ----------VSTKKAQQWCKSKGNIPYFETSAKEAINVDQAFETIARLALE 168

Rab7 subfamily. Rab7 is a small Rab GTPase that regulates vesicular traffic from early to late endosomal stages of the endocytic pathway. The yeast Ypt7 and mammalian Rab7 are both involved in transport to the vacuole/lysosome, whereas Ypt7 is also required for homotypic vacuole fusion. Mammalian Rab7 is an essential participant in the autophagic pathway for sequestration and targeting of cytoplasmic components to the lytic compartment. Mammalian Rab7 is also proposed to function as a tumor suppressor. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 172

>gnl|CDD|206695 cd04112, Rab26, Rab GTPase family 26 (Rab26)

 Score = 96.5 bits (240), Expect = 3e-25
 Identities = 67/200 (33%), Positives = 101/200 (50%), Gaps = 24/200 (12%)

Query: 8   KCVTVGDGAVGKTCLLISYTSNTF-PTDYVPTVFDNFSANVV-VNGSTVNLGLWDTAGQE 65
           K + VGD  VGKTCLL+ +    F    ++ TV   F+  VV V+G  V L +WDTAGQE
Sbjct: 2   KVMLVGDSGVGKTCLLVRFKDGAFLAGSFIATVGIQFTNKVVTVDGVKVKLQIWDTAGQE 61

Query: 66  DYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPG-VPIILVGTKLDLRD 124
            +  +    YR A   +L + + +K+S++N+ + W+ E+  YA   V I+L+G K D+  
Sbjct: 62  RFRSVTHAYYRDAHALLLLYDVTNKSSFDNI-RAWLTEILEYAQSDVVIMLLGNKADMSG 120

Query: 125 DKQFFIDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQQNVKAVFDAAI-----RVVLQ 179
           ++           +    GE L K  G P ++E S+KT  NV+  F A       R V Q
Sbjct: 121 ERV----------VKREDGERLAKEYGVP-FMETSAKTGLNVELAFTAVAKELKHRSVEQ 169

Query: 180 PPKTKKK----KNKAQKACS 195
           P + K K      K +K+  
Sbjct: 170 PDEPKFKIQDYVEKQKKSSG 189

Rab26 subfamily. First identified in rat pancreatic acinar cells, Rab26 is believed to play a role in recruiting mature granules to the plasma membrane upon beta-adrenergic stimulation. Rab26 belongs to the Rab functional group III, which are considered key regulators of intracellular vesicle transport during exocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 191

>gnl|CDD|133377 cd04177, RSR1, RSR1/Bud1p family GTPase

 Score = 95.2 bits (237), Expect = 6e-25
 Identities = 53/173 (30%), Positives = 89/173 (51%), Gaps = 13/173 (7%)

Query: 8   KCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQEDY 67
           K V +G G VGK+ L + +  N F   Y PT+ D++   V ++G   +L + DTAG E +
Sbjct: 3   KIVVLGAGGVGKSALTVQFVQNVFIESYDPTIEDSYRKQVEIDGRQCDLEILDTAGTEQF 62

Query: 68  NRLRPLSYRGADVFILAFSLISKASYENVS--KKWIPELKHYAPGVPIILVGTKLDLRDD 125
             +R L  +    F+L +S+ S+AS   +   ++ +  +K  +  VP++LVG K DL DD
Sbjct: 63  TAMRELYIKSGQGFLLVYSVTSEASLNELGELREQVLRIKD-SDNVPMVLVGNKADLEDD 121

Query: 126 KQFFIDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQQNVKAVFDAAIRVVL 178
           +Q          +S   G  L +  G   + E S++ + NV  VF   +R ++
Sbjct: 122 RQ----------VSREDGVSLSQQWGNVPFYETSARKRTNVDEVFIDLVRQII 164

RSR1/Bud1p is a member of the Rap subfamily of the Ras family that is found in fungi. In budding yeasts, RSR1 is involved in selecting a site for bud growth on the cell cortex, which directs the establishment of cell polarization. The Rho family GTPase cdc42 and its GEF, cdc24, then establish an axis of polarized growth by organizing the actin cytoskeleton and secretory apparatus at the bud site. It is believed that cdc42 interacts directly with RSR1 in vivo. In filamentous fungi, polar growth occurs at the tips of hypha and at novel growth sites along the extending hypha. In Ashbya gossypii, RSR1 is a key regulator of hyphal growth, localizing at the tip region and regulating in apical polarization of the actin cytoskeleton. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Length = 168

>gnl|CDD|133318 cd04118, Rab24, Rab GTPase family 24 (Rab24)

 Score = 94.5 bits (235), Expect = 2e-24
 Identities = 60/170 (35%), Positives = 81/170 (47%), Gaps = 18/170 (10%)

Query: 7   IKCVTVGDGAVGKTCLLISYTSNTF-PTDYVPTVFDNFSAN-VVVNGSTVNLGLWDTAGQ 64
           +K V +G  +VGKT L+  Y  + F    Y  T+   F A  +VV    V LG+WDTAG 
Sbjct: 1   VKVVMLGKESVGKTSLVERYVHHRFLVGPYQNTIGAAFVAKRMVVGERVVTLGIWDTAGS 60

Query: 65  EDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDL-- 122
           E Y  +  + YRGA   I+ + L   +S+E   K W+ EL++      I L GTK DL  
Sbjct: 61  ERYEAMSRIYYRGAKAAIVCYDLTDSSSFERA-KFWVKELQNLEEHCKIYLCGTKSDLIE 119

Query: 123 --RDDKQFFIDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQQNVKAVF 170
             R  +Q        V     Q  +    I A  + E SSKT QNV  +F
Sbjct: 120 QDRSLRQ--------VDFHDVQ--DFADEIKAQHF-ETSSKTGQNVDELF 158

Rab24 is distinct from other Rabs in several ways. It exists primarily in the GTP-bound state, having a low intrinsic GTPase activity; it is not efficiently geranyl-geranylated at the C-terminus; it does not form a detectable complex with Rab GDP-dissociation inhibitors (GDIs); and it has recently been shown to undergo tyrosine phosphorylation when overexpressed in vitro. The specific function of Rab24 still remains unknown. It is found in a transport route between ER-cis-Golgi and late endocytic compartments. It is putatively involved in an autophagic pathway, possibly directing misfolded proteins in the ER to degradative pathways. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 193

>gnl|CDD|206657 cd01865, Rab3, Rab GTPase family 3 contains Rab3A, Rab3B, Rab3C and Rab3D

 Score = 92.7 bits (230), Expect = 6e-24
 Identities = 55/172 (31%), Positives = 90/172 (52%), Gaps = 14/172 (8%)

Query: 8   KCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVV-NGSTVNLGLWDTAGQED 66
           K + +G+ +VGKT  L  Y  ++F + +V TV  +F    V  N   + L +WDTAGQE 
Sbjct: 3   KLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVYRNDKRIKLQIWDTAGQER 62

Query: 67  YNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYA-PGVPIILVGTKLDLRDD 125
           Y  +    YRGA  FIL + + ++ S+  V + W  ++K Y+     +ILVG K D+ D+
Sbjct: 63  YRTITTAYYRGAMGFILMYDITNEESFNAV-QDWSTQIKTYSWDNAQVILVGNKCDMEDE 121

Query: 126 KQFFIDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQQNVKAVFDAAIRVV 177
           +           +S  +G +L   +G   + E S+K   NVK VF+  + ++
Sbjct: 122 RV----------VSAERGRQLADQLGF-EFFEASAKENINVKQVFERLVDII 162

The Rab3 subfamily contains Rab3A, Rab3B, Rab3C, and Rab3D. All four isoforms were found in mouse brain and endocrine tissues, with varying levels of expression. Rab3A, Rab3B, and Rab3C localized to synaptic and secretory vesicles; Rab3D was expressed at high levels only in adipose tissue, exocrine glands, and the endocrine pituitary, where it is localized to cytoplasmic secretory granules. Rab3 appears to control Ca2+-regulated exocytosis. The appropriate GDP/GTP exchange cycle of Rab3A is required for Ca2+-regulated exocytosis to occur, and interaction of the GTP-bound form of Rab3A with effector molecule(s) is widely believed to be essential for this process. Functionally, most studies point toward a role for Rab3 in the secretion of hormones and neurotransmitters. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 165

>gnl|CDD|206648 cd00882, Ras_like_GTPase, Rat sarcoma (Ras)-like superfamily of small guanosine triphosphatases (GTPases)

 Score = 92.1 bits (229), Expect = 7e-24
 Identities = 46/174 (26%), Positives = 69/174 (39%), Gaps = 21/174 (12%)

Query: 10  VTVGDGAVGKTCLLISYTSNTF---PTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQED 66
           V VG G VGK+ LL +               T  D       ++   V L L DT G ++
Sbjct: 1   VVVGRGGVGKSSLLNALLGGEVGEVSDVPGTTR-DPDVYVKELDKGKVKLVLVDTPGLDE 59

Query: 67  YNRLRP-----LSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLD 121
           +  L       L  RGAD+ +L      + S E+     +  L+    G+PIILVG K+D
Sbjct: 60  FGGLGREELARLLLRGADLILLVVDSTDRESEEDAKLLILRRLR--KEGIPIILVGNKID 117

Query: 122 LRDDKQFFIDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQQNVKAVFDAAIR 175
           L +++           +      E    I      E S+KT + V  +F+  I 
Sbjct: 118 LLEER----------EVEELLRLEELAKILGVPVFEVSAKTGEGVDELFEKLIE 161

Ras-like GTPase superfamily. The Ras-like superfamily of small GTPases consists of several families with an extremely high degree of structural and functional similarity. The Ras superfamily is divided into at least four families in eukaryotes: the Ras, Rho, Rab, and Sar1/Arf families. This superfamily also includes proteins like the GTP translation factors, Era-like GTPases, and G-alpha chain of the heterotrimeric G proteins. Members of the Ras superfamily regulate a wide variety of cellular functions: the Ras family regulates gene expression, the Rho family regulates cytoskeletal reorganization and gene expression, the Rab and Sar1/Arf families regulate vesicle trafficking, and the Ran family regulates nucleocytoplasmic transport and microtubule organization. The GTP translation factor family regulates initiation, elongation, termination, and release in translation, and the Era-like GTPase family regulates cell division, sporulation, and DNA replication. Members of the Ras superfamily are identified by the GTP binding site, which is made up of five characteristic sequence motifs, and the switch I and switch II regions. Length = 161

>gnl|CDD|206658 cd01866, Rab2, Rab GTPase family 2 (Rab2)

 Score = 91.7 bits (228), Expect = 1e-23
 Identities = 47/168 (27%), Positives = 88/168 (52%), Gaps = 20/168 (11%)

Query: 8   KCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVV-VNGSTVNLGLWDTAGQED 66
           K + +GD  VGK+CLL+ +T   F   +  T+   F A ++ ++G  + L +WDTAGQE 
Sbjct: 6   KYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDGKQIKLQIWDTAGQES 65

Query: 67  YNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYA-PGVPIILVGTKLDLRDD 125
           +  +    YRGA   +L + +  + ++ +++  W+ + + ++   + I+L+G K DL   
Sbjct: 66  FRSITRSYYRGAAGALLVYDITRRETFNHLT-SWLEDARQHSNSNMTIMLIGNKCDLESR 124

Query: 126 KQFFIDHPGAVPISTAQGEELRK---LIGAPAYIECSSKTQQNVKAVF 170
           ++          +S  +GE   +   LI    ++E S+KT  NV+  F
Sbjct: 125 RE----------VSYEEGEAFAREHGLI----FMETSAKTASNVEEAF 158

Rab2 is localized on cis-Golgi membranes and interacts with Golgi matrix proteins. Rab2 is also implicated in the maturation of vesicular tubular clusters (VTCs), which are microtubule-associated intermediates in transport between the ER and Golgi apparatus. In plants, Rab2 regulates vesicle trafficking between the ER and the Golgi bodies and is important to pollen tube growth. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 168

>gnl|CDD|206708 cd04136, Rap_like, Rap-like family consists of Rap1, Rap2 and RSR1

 Score = 90.7 bits (225), Expect = 2e-23
 Identities = 49/170 (28%), Positives = 86/170 (50%), Gaps = 13/170 (7%)

Query: 8   KCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQEDY 67
           K V +G G VGK+ L + +    F   Y PT+ D++   + V+     L + DTAG E +
Sbjct: 3   KLVVLGSGGVGKSALTVQFVQGIFVDKYDPTIEDSYRKQIEVDCQQCMLEILDTAGTEQF 62

Query: 68  NRLRPLSYRGADVFILAFSLISKASYENVS--KKWIPELKHYAPGVPIILVGTKLDLRDD 125
             +R L  +    F L +S+ ++ S+ ++   ++ I  +K     VP+ILVG K DL D+
Sbjct: 63  TAMRDLYIKNGQGFALVYSITAQQSFNDLQDLREQILRVKDTED-VPMILVGNKCDLEDE 121

Query: 126 KQFFIDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQQNVKAVFDAAIR 175
           +           +S  +G+ L +  G   ++E S+K++ NV  +F   +R
Sbjct: 122 RV----------VSKEEGQNLARQWGNCPFLETSAKSKINVDEIFYDLVR 161

The Rap subfamily consists of the Rap1, Rap2, and RSR1. Rap subfamily proteins perform different cellular functions, depending on the isoform and its subcellular localization. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and microsomal membrane of the pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. Rap1 localizes in the nucleus of human oropharyngeal squamous cell carcinomas (SCCs) and cell lines. Rap1 plays a role in phagocytosis by controlling the binding of adhesion receptors (typically integrins) to their ligands. In yeast, Rap1 has been implicated in multiple functions, including activation and silencing of transcription and maintenance of telomeres. Rap2 is involved in multiple functions, including activation of c-Jun N-terminal kinase (JNK) to regulate the actin cytoskeleton and activation of the Wnt/beta-catenin signaling pathway in embryonic Xenopus. A number of effector proteins for Rap2 have been identified, including isoform 3 of the human mitogen-activated protein kinase kinase kinase kinase 4 (MAP4K4) and Traf2- and Nck-interacting kinase (TNIK), and the RalGEFs RalGDS, RGL, and Rlf, which also interact with Rap1 and Ras. RSR1 is the fungal homolog of Rap1 and Rap2. In budding yeasts, it is involved in selecting a site for bud growth, which directs the establishment of cell polarization. The Rho family GTPase Cdc42 and its GEF, Cdc24, then establish an axis of polarized growth. It is believed that Cdc42 interacts directly with RSR1 in vivo. In filamentous fungi such as Ashbya gossypii, RSR1 is a key regulator of polar growth in the hypha. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 164

>gnl|CDD|215587 PLN03118, PLN03118, Rab family protein; Provisional

 Score = 91.3 bits (226), Expect = 5e-23
 Identities = 56/188 (29%), Positives = 97/188 (51%), Gaps = 15/188 (7%)

Query: 8   KCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFS-ANVVVNGSTVNLGLWDTAGQED 66
           K + +GD  VGK+ LL+S+ S++   D  PT+  +F    + V G  + L +WDTAGQE 
Sbjct: 16  KILLIGDSGVGKSSLLVSFISSSV-EDLAPTIGVDFKIKQLTVGGKRLKLTIWDTAGQER 74

Query: 67  YNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPII--LVGTKLDLRD 124
           +  L    YR A   IL + +  + ++ N+S  W  E++ Y+     +  LVG K+D   
Sbjct: 75  FRTLTSSYYRNAQGIILVYDVTRRETFTNLSDVWGKEVELYSTNQDCVKMLVGNKVDRES 134

Query: 125 DKQFFIDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQQNVKAVFDAAIRVVLQPPKTK 184
           ++           +S  +G  L K  G   ++ECS+KT++NV+  F+     +++ P   
Sbjct: 135 ERD----------VSREEGMALAKEHGC-LFLECSAKTRENVEQCFEELALKIMEVPSLL 183

Query: 185 KKKNKAQK 192
           ++ + A K
Sbjct: 184 EEGSTAVK 191

Length = 211

>gnl|CDD|133311 cd04111, Rab39, Rab GTPase family 39 (Rab39)

 Score = 91.0 bits (226), Expect = 6e-23
 Identities = 55/165 (33%), Positives = 85/165 (51%), Gaps = 16/165 (9%)

Query: 10  VTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVV--VNGSTVNLGLWDTAGQEDY 67
           + +GD  VGK+ LL  +T   F     PTV  +F + ++    G  + L LWDTAGQE +
Sbjct: 6   IVIGDSTVGKSSLLKRFTEGRFAEVSDPTVGVDFFSRLIEIEPGVRIKLQLWDTAGQERF 65

Query: 68  NRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELK-HYAPGVPI-ILVGTKLDLRDD 125
             +    YR +   +L F + ++ S+E+V   W+ E + H  P  P+ ILVG K DL   
Sbjct: 66  RSITRSYYRNSVGVLLVFDITNRESFEHV-HDWLEEARSHIQPHRPVFILVGHKCDLESQ 124

Query: 126 KQFFIDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQQNVKAVF 170
           +Q          ++  + E+L K +G   YIE S++T  NV+  F
Sbjct: 125 RQ----------VTREEAEKLAKDLGM-KYIETSARTGDNVEEAF 158

Found in eukaryotes, Rab39 is mainly found in epithelial cell lines, but is distributed widely in various human tissues and cell lines. It is believed to be a novel Rab protein involved in regulating Golgi-associated vesicular transport during cellular endocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 211

>gnl|CDD|133310 cd04110, Rab35, Rab GTPase family 35 (Rab35)

 Score = 89.5 bits (222), Expect = 2e-22
 Identities = 59/203 (29%), Positives = 95/203 (46%), Gaps = 28/203 (13%)

Query: 8   KCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSA-NVVVNGSTVNLGLWDTAGQED 66
           K + +GD  VGK+ LL+ +  NTF   Y+ T+  +F    V +NG  V L +WDTAGQE 
Sbjct: 8   KLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGERVKLQIWDTAGQER 67

Query: 67  YNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLRDDK 126
           +  +    YRG    I+ + + +  S+ NV K+W+ E++     V  +LVG K D  D +
Sbjct: 68  FRTITSTYYRGTHGVIVVYDVTNGESFVNV-KRWLQEIEQNCDDVCKVLVGNKND--DPE 124

Query: 127 QFFIDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQQNVKAVFDAAIRVVL-----QPP 181
           +  ++   A   +   G  L          E S+K   NV+ +F+    +VL        
Sbjct: 125 RKVVETEDAYKFAGQMGISL---------FETSAKENINVEEMFNCITELVLRAKKDNLA 175

Query: 182 KTKK----------KKNKAQKAC 194
           K ++          K +K +K C
Sbjct: 176 KQQQQQQNDVVKLPKNSKRKKRC 198

Rab35 is one of several Rab proteins to be found to participate in the regulation of osteoclast cells in rats. In addition, Rab35 has been identified as a protein that interacts with nucleophosmin-anaplastic lymphoma kinase (NPM-ALK) in human cells. Overexpression of NPM-ALK is a key oncogenic event in some anaplastic large-cell lymphomas; since Rab35 interacts with N|PM-ALK, it may provide a target for cancer treatments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 199

>gnl|CDD|206693 cd04108, Rab36_Rab34, Rab GTPase families 34 (Rab34) and 36 (Rab36)

 Score = 88.8 bits (220), Expect = 2e-22
 Identities = 56/166 (33%), Positives = 83/166 (50%), Gaps = 13/166 (7%)

Query: 8   KCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSAN-VVVNGSTVNLGLWDTAGQED 66
           K + VGD +VGKTCL+  +  + F  +Y  T+  +F      V G   +L LWDTAGQE 
Sbjct: 2   KVIVVGDLSVGKTCLINRFCKDVFDKNYKATIGVDFEMERFEVLGVPFSLQLWDTAGQER 61

Query: 67  YNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPE-LKHYAPG-VPIILVGTKLDLRD 124
           +  +    YRGA   I+ F L   AS E+ +++W+ + LK   P  V + LVGTK DL  
Sbjct: 62  FKCIASTYYRGAQAIIIVFDLTDVASLEH-TRQWLEDALKENDPSSVLLFLVGTKKDLSS 120

Query: 125 DKQFFIDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQQNVKAVF 170
             Q+ +    A+ ++     E         Y   S+ T +NV+  F
Sbjct: 121 PAQYALMEQDAIKLAREMKAE---------YWAVSALTGENVRDFF 157

Rab34/Rab36 subfamily. Rab34, found primarily in the Golgi, interacts with its effector, Rab-interacting lysosomal protein (RILP). This enables its participation in microtubular dynenin-dynactin-mediated repositioning of lysosomes from the cell periphery to the Golgi. A Rab34 (Rah) isoform that lacks the consensus GTP-binding region has been identified in mice. This isoform is associated with membrane ruffles and promotes macropinosome formation. Rab36 has been mapped to human chromosome 22q11.2, a region that is homozygously deleted in malignant rhabdoid tumors (MRTs). However, experimental assessments do not implicate Rab36 as a tumor suppressor that would enable tumor formation through a loss-of-function mechanism. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 170

>gnl|CDD|178655 PLN03108, PLN03108, Rab family protein; Provisional

 Score = 89.2 bits (221), Expect = 3e-22
 Identities = 54/172 (31%), Positives = 92/172 (53%), Gaps = 14/172 (8%)

Query: 1   MSASRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVV-VNGSTVNLGLW 59
           MS +   K + +GD  VGK+CLL+ +T   F   +  T+   F A ++ ++   + L +W
Sbjct: 1   MSYAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIW 60

Query: 60  DTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYA-PGVPIILVGT 118
           DTAGQE +  +    YRGA   +L + +  + ++ +++  W+ + + +A   + I+L+G 
Sbjct: 61  DTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLA-SWLEDARQHANANMTIMLIGN 119

Query: 119 KLDLRDDKQFFIDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQQNVKAVF 170
           K DL         H  AV  ST +GE+  K  G   ++E S+KT QNV+  F
Sbjct: 120 KCDLA--------HRRAV--STEEGEQFAKEHGL-IFMEASAKTAQNVEEAF 160

Length = 210

>gnl|CDD|133314 cd04114, Rab30, Rab GTPase family 30 (Rab30)

 Score = 88.0 bits (218), Expect = 3e-22
 Identities = 55/173 (31%), Positives = 88/173 (50%), Gaps = 15/173 (8%)

Query: 8   KCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVV-VNGSTVNLGLWDTAGQED 66
           K V +G+  VGKTCL+  +T   FP     T+  +F    V + G  + L +WDTAGQE 
Sbjct: 9   KIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEIKGEKIKLQIWDTAGQER 68

Query: 67  YNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPG-VPIILVGTKLDLRDD 125
           +  +    YR A+  IL + +  + S+  +  +W+ E++ YA   V  ILVG K+DL + 
Sbjct: 69  FRSITQSYYRSANALILTYDITCEESFRCLP-EWLREIEQYANNKVITILVGNKIDLAER 127

Query: 126 KQFFIDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQQNVKAVF-DAAIRVV 177
           ++          +S  + EE         Y+E S+K   NV+ +F D A R++
Sbjct: 128 RE----------VSQQRAEEFSD-AQDMYYLETSAKESDNVEKLFLDLACRLI 169

Rab30 subfamily. Rab30 appears to be associated with the Golgi stack. It is expressed in a wide variety of tissue types and in humans maps to chromosome 11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 169

>gnl|CDD|206712 cd04141, Rit_Rin_Ric, Ras-like protein in all tissues (Rit), Ras-like protein in neurons (Rin) and Ras-related protein which interacts with calmodulin (Ric)

 Score = 87.2 bits (216), Expect = 6e-22
 Identities = 45/173 (26%), Positives = 85/173 (49%), Gaps = 14/173 (8%)

Query: 5   RFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQ 64
           R  K V +G G VGK+ + + + S++FP  + PT+ D +     ++     L + DTAGQ
Sbjct: 1   REYKIVMLGAGGVGKSAVTMQFISHSFPDYHDPTIEDAYKTQARIDNEPALLDILDTAGQ 60

Query: 65  EDYNRLRPLSYRGADVFILAFSLISKASYENVS--KKWIPELKHYAPGVPIILVGTKLDL 122
            ++  +R    R  + FI+ +S+  + S++  S  K+ I  ++     +P++LVG K+DL
Sbjct: 61  AEFTAMRDQYMRCGEGFIICYSVTDRHSFQEASEFKELITRVRL-TEDIPLVLVGNKVDL 119

Query: 123 RDDKQFFIDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQQNVKAVFDAAIR 175
              +Q          ++T +G  L +    P + E S+  +  +   F   +R
Sbjct: 120 EQQRQ----------VTTEEGRNLAREFNCP-FFETSAALRFYIDDAFHGLVR 161

Rit (Ras-like protein in all tissues), Rin (Ras-like protein in neurons) and Ric (Ras-related protein which interacts with calmodulin) form a subfamily with several unique structural and functional characteristics. These proteins all lack a the C-terminal CaaX lipid-binding motif typical of Ras family proteins, and Rin and Ric contain calmodulin-binding domains. Rin, which is expressed only in neurons, induces neurite outgrowth in rat pheochromocytoma cells through its association with calmodulin and its activation of endogenous Rac/cdc42. Rit, which is ubiquitously expressed in mammals, inhibits growth-factor withdrawl-mediated apoptosis and induces neurite extension in pheochromocytoma cells. Rit and Rin are both able to form a ternary complex with PAR6, a cell polarity-regulating protein, and Rac/cdc42. This ternary complex is proposed to have physiological function in processes such as tumorigenesis. Activated Ric is likely to signal in parallel with the Ras pathway or stimulate the Ras pathway at some upstream point, and binding of calmodulin to Ric may negatively regulate Ric activity. Length = 172

>gnl|CDD|206713 cd04146, RERG_RasL11_like, Ras-related and Estrogen-Regulated Growth inhibitor (RERG) and Ras-like 11 (RasL11)-like families

 Score = 86.9 bits (216), Expect = 8e-22
 Identities = 53/179 (29%), Positives = 89/179 (49%), Gaps = 20/179 (11%)

Query: 8   KCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQED- 66
           K   +G   VGK+ L + + +  F  +Y P +   +S  V ++G  V+L + DT GQ+  
Sbjct: 1   KIAVLGASGVGKSALTVRFLTKRFIGEYEPNLESLYSRQVTIDGEQVSLEIQDTPGQQQN 60

Query: 67  ---YNRLRPLSYRGADVFILAFSLISKASYENVS--KKWIPELKHYAPGVPIILVGTKLD 121
               +  R L  R AD F+L +S+  ++S++ VS   + I E+K     +P+ILVG K D
Sbjct: 61  EDPESLERSL--RWADGFVLVYSITDRSSFDVVSQLLQLIREIKKRDGEIPVILVGNKAD 118

Query: 122 LRDDKQFFIDHPGAVPISTAQGEELRKLIGAPAYIECS-SKTQQNVKAVFDAAIRVVLQ 179
           L   +Q          +ST +G++L   +G   + E S ++    V+ VF    R V +
Sbjct: 119 LLHSRQ----------VSTEEGQKLALELGC-LFFEVSAAENYLEVQNVFHELCREVRR 166

RERG (Ras-related and Estrogen- Regulated Growth inhibitor) and Ras-like 11 are members of a novel subfamily of Ras that were identified based on their behavior in breast and prostate tumors, respectively. RERG expression was decreased or lost in a significant fraction of primary human breast tumors that lack estrogen receptor and are correlated with poor clinical prognosis. Elevated RERG expression correlated with favorable patient outcome in a breast tumor subtype that is positive for estrogen receptor expression. In contrast to most Ras proteins, RERG overexpression inhibited the growth of breast tumor cells in vitro and in vivo. RasL11 was found to be ubiquitously expressed in human tissue, but down-regulated in prostate tumors. Both RERG and RasL11 lack the C-terminal CaaX prenylation motif, where a = an aliphatic amino acid and X = any amino acid, and are localized primarily in the cytoplasm. Both are believed to have tumor suppressor activity. Length = 166

>gnl|CDD|133375 cd04175, Rap1, Rap1 family GTPase consists of Rap1a and Rap1b isoforms

 Score = 86.0 bits (213), Expect = 2e-21
 Identities = 51/170 (30%), Positives = 88/170 (51%), Gaps = 14/170 (8%)

Query: 8   KCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQEDY 67
           K V +G G VGK+ L + +    F   Y PT+ D++   V V+G    L + DTAG E +
Sbjct: 3   KLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDGQQCMLEILDTAGTEQF 62

Query: 68  NRLRPLSYRGADVFILAFSLISKASYENVS--KKWIPELKHYAPGVPIILVGTKLDLRDD 125
             +R L  +    F+L +S+ +++++ ++   ++ I  +K     VP+ILVG K DL D+
Sbjct: 63  TAMRDLYMKNGQGFVLVYSITAQSTFNDLQDLREQILRVKDTE-DVPMILVGNKCDLEDE 121

Query: 126 KQFFIDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQQNVKAVFDAAIR 175
           +           +   QG+ L +  G  A++E S+K + NV  +F   +R
Sbjct: 122 RV----------VGKEQGQNLARQWGC-AFLETSAKAKINVNEIFYDLVR 160

The Rap1 subgroup is part of the Rap subfamily of the Ras family. It can be further divided into the Rap1a and Rap1b isoforms. In humans, Rap1a and Rap1b share 95% sequence homology, but are products of two different genes located on chromosomes 1 and 12, respectively. Rap1a is sometimes called smg p21 or Krev1 in the older literature. Rap1 proteins are believed to perform different cellular functions, depending on the isoform, its subcellular localization, and the effector proteins it binds. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and the microsomal membrane of pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. High expression of Rap1 has been observed in the nucleus of human oropharyngeal squamous cell carcinomas (SCCs) and cell lines; interestingly, in the SCCs, the active GTP-bound form localized to the nucleus, while the inactive GDP-bound form localized to the cytoplasm. Rap1 plays a role in phagocytosis by controlling the binding of adhesion receptors (typically integrins) to their ligands. In yeast, Rap1 has been implicated in multiple functions, including activation and silencing of transcription and maintenance of telomeres. Rap1a, which is stimulated by T-cell receptor (TCR) activation, is a positive regulator of T cells by directing integrin activation and augmenting lymphocyte responses. In murine hippocampal neurons, Rap1b determines which neurite will become the axon and directs the recruitment of Cdc42, which is required for formation of dendrites and axons. In murine platelets, Rap1b is required for normal homeostasis in vivo and is involved in integrin activation. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 164

>gnl|CDD|206680 cd01893, Miro1, Mitochondrial Rho family 1 (Miro1), N-terminal

 Score = 85.5 bits (212), Expect = 3e-21
 Identities = 56/174 (32%), Positives = 82/174 (47%), Gaps = 8/174 (4%)

Query: 7   IKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQED 66
           ++ V +GD  VGK+ L++S  S  FP + VP V    +    V    V   + DT+ +  
Sbjct: 3   VRIVLIGDEGVGKSSLIMSLVSEEFP-ENVPRVLPEITIPADVTPERVPTTIVDTSSRPQ 61

Query: 67  YNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLRDDK 126
                    R A+V  L +S+   ++ E +  KW+P ++     VPIILVG K DLRD  
Sbjct: 62  DRANLAAEIRKANVICLVYSVDRPSTLERIRTKWLPLIRRLGVKVPIILVGNKSDLRDGS 121

Query: 127 QFFIDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQQNVKAVFDAAIRVVLQP 180
                    +PI      E R++      +ECS+KT  NV  VF  A + VL P
Sbjct: 122 SQAGLEEEMLPIM----NEFREIE---TCVECSAKTLINVSEVFYYAQKAVLHP 168

Miro1 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the N-terminal GTPase domain of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature. Length = 168

>gnl|CDD|133322 cd04122, Rab14, Rab GTPase family 14 (Rab14)

 Score = 84.1 bits (208), Expect = 1e-20
 Identities = 51/174 (29%), Positives = 88/174 (50%), Gaps = 14/174 (8%)

Query: 8   KCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVV-VNGSTVNLGLWDTAGQED 66
           K + +GD  VGK+CLL  +T   F  D   T+   F   ++ VNG  + L +WDTAGQE 
Sbjct: 4   KYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVNGQKIKLQIWDTAGQER 63

Query: 67  YNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYA-PGVPIILVGTKLDLRDD 125
           +  +    YRGA   ++ + +  +++Y ++S  W+ + ++   P   I L+G K DL   
Sbjct: 64  FRAVTRSYYRGAAGALMVYDITRRSTYNHLS-SWLTDARNLTNPNTVIFLIGNKADLEAQ 122

Query: 126 KQFFIDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQQNVKAVFDAAIRVVLQ 179
           +   + +  A   +   G     L+    ++ECS+KT +NV+  F    + + Q
Sbjct: 123 RD--VTYEEAKQFADENG-----LL----FLECSAKTGENVEDAFLETAKKIYQ 165

Rab14 GTPases are localized to biosynthetic compartments, including the rough ER, the Golgi complex, and the trans-Golgi network, and to endosomal compartments, including early endosomal vacuoles and associated vesicles. Rab14 is believed to function in both the biosynthetic and recycling pathways between the Golgi and endosomal compartments. Rab14 has also been identified on GLUT4 vesicles, and has been suggested to help regulate GLUT4 translocation. In addition, Rab14 is believed to play a role in the regulation of phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 166

>gnl|CDD|206643 cd00877, Ran, Ras-related nuclear proteins (Ran)/TC4 family of small GTPases

 Score = 82.7 bits (205), Expect = 3e-20
 Identities = 42/127 (33%), Positives = 60/127 (47%), Gaps = 14/127 (11%)

Query: 7   IKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVV-------NGSTVNLGLW 59
            K V VGDG  GKT  +  + +  F   YV T+       V V       N   +   +W
Sbjct: 1   FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATL------GVEVHPLDFHTNRGKIRFNVW 54

Query: 60  DTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTK 119
           DTAGQE +  LR   Y      I+ F + S+ +Y+NV   W  +L      +PI+L G K
Sbjct: 55  DTAGQEKFGGLRDGYYIQGQCAIIMFDVTSRVTYKNV-PNWHRDLVRVCENIPIVLCGNK 113

Query: 120 LDLRDDK 126
           +D++D K
Sbjct: 114 VDIKDRK 120

Ran GTPase is involved in diverse biological functions, such as nuclear transport, spindle formation during mitosis, DNA replication, and cell division. Among the Ras superfamily, Ran is a unique small G protein. It does not have a lipid modification motif at the C-terminus to bind to the membrane, which is often observed within the Ras superfamily. Ran may therefore interact with a wide range of proteins in various intracellular locations. Like other GTPases, Ran exists in GTP- and GDP-bound conformations that interact differently with effectors. Conversion between these forms and the assembly or disassembly of effector complexes requires the interaction of regulator proteins. The intrinsic GTPase activity of Ran is very low, but it is greatly stimulated by a GTPase-activating protein (RanGAP1) located in the cytoplasm. By contrast, RCC1, a guanine nucleotide exchange factor that generates RanGTP, is bound to chromatin and confined to the nucleus. Ran itself is mobile and is actively imported into the nucleus by a mechanism involving NTF-2. Together with the compartmentalization of its regulators, this is thought to produce a relatively high concentration of RanGTP in the nucleus. Length = 166

>gnl|CDD|133324 cd04124, RabL2, Rab GTPase-like family 2 (Rab-like2)

 Score = 80.3 bits (198), Expect = 2e-19
 Identities = 41/121 (33%), Positives = 62/121 (51%), Gaps = 10/121 (8%)

Query: 7   IKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSA-----NVVVNGSTVNLGLWDT 61
           +K + +GD AVGK+ L+  +  +     Y P     ++      N    G T+ +  WDT
Sbjct: 1   VKIILLGDSAVGKSKLVERFLMD----GYEPQQLSTYALTLYKHNAKFEGKTILVDFWDT 56

Query: 62  AGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLD 121
           AGQE +  +    Y  A   IL F +  K +Y+N+S KW  EL+ Y P +P I+V  K+D
Sbjct: 57  AGQERFQTMHASYYHKAHACILVFDVTRKITYKNLS-KWYEELREYRPEIPCIVVANKID 115

Query: 122 L 122
           L
Sbjct: 116 L 116

RabL2 (Rab-like2) subfamily. RabL2s are novel Rab proteins identified recently which display features that are distinct from other Rabs, and have been termed Rab-like. RabL2 contains RabL2a and RabL2b, two very similar Rab proteins that share > 98% sequence identity in humans. RabL2b maps to the subtelomeric region of chromosome 22q13.3 and RabL2a maps to 2q13, a region that suggests it is also a subtelomeric gene. Both genes are believed to be expressed ubiquitously, suggesting that RabL2s are the first example of duplicated genes in human proximal subtelomeric regions that are both expressed actively. Like other Rab-like proteins, RabL2s lack a prenylation site at the C-terminus. The specific functions of RabL2a and RabL2b remain unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Length = 161

>gnl|CDD|206688 cd04101, RabL4, Rab GTPase-like family 4 (Rab-like4)

 Score = 79.1 bits (195), Expect = 8e-19
 Identities = 45/171 (26%), Positives = 82/171 (47%), Gaps = 19/171 (11%)

Query: 8   KCVTVGDGAVGKTCLLISYTSN--TFPTDYVPTVFDNFSANVV---VNGSTVNLGLWDTA 62
           +C  VGD AVGK+ L+  + S+  TF  +Y  T   +     V       +V L ++D+A
Sbjct: 2   QCAVVGDPAVGKSALVQMFHSDGATFQKNYTMTTGCDLVVKTVPVPDTSDSVELFIFDSA 61

Query: 63  GQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGV--PIILVGTKL 120
           GQE ++ +    +    V  + + + ++ S+ N S +WI  ++ ++ G+  P +LVG K 
Sbjct: 62  GQELFSDMVENVWEQPAVVCVVYDVTNEVSFNNCS-RWINRVRTHSHGLHTPGVLVGNKC 120

Query: 121 DLRDDKQFFIDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQQNVKAVFD 171
           DL D ++  +D   A  ++ A   +         + E S+K     +A F 
Sbjct: 121 DLTDRRE--VDAAQAQALAQANTLK---------FYETSAKEGVGYEAPFL 160

RabL4 (Rab-like4) subfamily. RabL4s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL4 lacks a prenylation site at the C-terminus. The specific function of RabL4 remains unknown. Length = 167

>gnl|CDD|240284 PTZ00132, PTZ00132, GTP-binding nuclear protein Ran; Provisional

 Score = 80.1 bits (198), Expect = 1e-18
 Identities = 40/125 (32%), Positives = 62/125 (49%), Gaps = 10/125 (8%)

Query: 7   IKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANV-----VVNGSTVNLGLWDT 61
            K + VGDG VGKT  +  + +  F   Y+PT+       V       N   +   +WDT
Sbjct: 10  FKLILVGDGGVGKTTFVKRHLTGEFEKKYIPTL----GVEVHPLKFYTNCGPICFNVWDT 65

Query: 62  AGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLD 121
           AGQE +  LR   Y      I+ F + S+ +Y+NV   W  ++      +PI+LVG K+D
Sbjct: 66  AGQEKFGGLRDGYYIKGQCAIIMFDVTSRITYKNVP-NWHRDIVRVCENIPIVLVGNKVD 124

Query: 122 LRDDK 126
           ++D +
Sbjct: 125 VKDRQ 129

Length = 215

>gnl|CDD|133315 cd04115, Rab33B_Rab33A, Rab GTPase family 33 includes Rab33A and Rab33B

 Score = 79.0 bits (195), Expect = 1e-18
 Identities = 42/127 (33%), Positives = 66/127 (51%), Gaps = 5/127 (3%)

Query: 5   RFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNF-SANVVVNGSTVNLGLWDTAG 63
           R  K + +GD  VGKTCL   + +  FP     T+  +F    V ++G  + + LWDTAG
Sbjct: 1   RIFKIIVIGDSNVGKTCLTYRFCAGRFPERTEATIGVDFRERTVEIDGERIKVQLWDTAG 60

Query: 64  QEDYNR-LRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYA--PGVPIILVGTKL 120
           QE + + +    YR     +  + + + AS+ ++   WI E + ++    VP ILVG K 
Sbjct: 61  QERFRKSMVQHYYRNVHAVVFVYDVTNMASFHSL-PSWIEECEQHSLPNEVPRILVGNKC 119

Query: 121 DLRDDKQ 127
           DLR+  Q
Sbjct: 120 DLREQIQ 126

Rab33B/Rab33A subfamily. Rab33B is ubiquitously expressed in mouse tissues and cells, where it is localized to the medial Golgi cisternae. It colocalizes with alpha-mannose II. Together with the other cisternal Rabs, Rab6A and Rab6A', it is believed to regulate the Golgi response to stress and is likely a molecular target in stress-activated signaling pathways. Rab33A (previously known as S10) is expressed primarily in the brain and immune system cells. In humans, it is located on the X chromosome at Xq26 and its expression is down-regulated in tuberculosis patients. Experimental evidence suggests that Rab33A is a novel CD8+ T cell factor that likely plays a role in tuberculosis disease processes. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 170

>gnl|CDD|178657 PLN03110, PLN03110, Rab GTPase; Provisional

 Score = 77.7 bits (191), Expect = 8e-18
 Identities = 54/190 (28%), Positives = 93/190 (48%), Gaps = 16/190 (8%)

Query: 8   KCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVV-VNGSTVNLGLWDTAGQED 66
           K V +GD  VGK+ +L  +T N F  +   T+   F+   + V G TV   +WDTAGQE 
Sbjct: 14  KIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQER 73

Query: 67  YNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYA-PGVPIILVGTKLDLRDD 125
           Y  +    YRGA   +L + +  + +++NV ++W+ EL+ +A   + I++ G K DL   
Sbjct: 74  YRAITSAYYRGAVGALLVYDITKRQTFDNV-QRWLRELRDHADSNIVIMMAGNKSDL--- 129

Query: 126 KQFFIDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQQNVKAVFDAAIRVVLQPPKTKK 185
                +H  +V     Q    ++ +   +++E S+    NV+  F   +  +       K
Sbjct: 130 -----NHLRSVAEEDGQALAEKEGL---SFLETSALEATNVEKAFQTILLEIYH--IISK 179

Query: 186 KKNKAQKACS 195
           K   AQ+A +
Sbjct: 180 KALAAQEAAA 189

Length = 216

>gnl|CDD|206699 cd04120, Rab12, Rab GTPase family 12 (Rab12)

 Score = 77.0 bits (189), Expect = 1e-17
 Identities = 51/163 (31%), Positives = 81/163 (49%), Gaps = 13/163 (7%)

Query: 10  VTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVV-VNGSTVNLGLWDTAGQEDYN 68
           + +G   VGKT L+  +T +TF      TV  +F    V + G  + L +WDTAGQE +N
Sbjct: 4   IIIGSRGVGKTSLMERFTDDTFCEACKSTVGVDFKIKTVELRGKKIRLQIWDTAGQERFN 63

Query: 69  RLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAP-GVPIILVGTKLDLRDDKQ 127
            +    YR A   IL + +  K +++++  KW+  +  YA     ++LVG KLD   D++
Sbjct: 64  SITSAYYRSAKGIILVYDITKKETFDDLP-KWMKMIDKYASEDAELLLVGNKLDCETDRE 122

Query: 128 FFIDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQQNVKAVF 170
                     I+  QGE+  + I    + E S+K   NV  +F
Sbjct: 123 ----------ITRQQGEKFAQQITGMRFCEASAKDNFNVDEIF 155

Rab12 was first identified in canine cells, where it was localized to the Golgi complex. The specific function of Rab12 remains unknown, and inconsistent results about its cellular localization have been reported. More recent studies have identified Rab12 associated with post-Golgi vesicles, or with other small vesicle-like structures but not with the Golgi complex. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 202

>gnl|CDD|219856 pfam08477, Miro, Miro-like protein

 Score = 74.4 bits (183), Expect = 1e-17
 Identities = 36/116 (31%), Positives = 56/116 (48%), Gaps = 3/116 (2%)

Query: 8   KCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSAN-VVVNGSTVNLGLWDTAGQED 66
           K V +GD   GK+ LL       FP + +    D  + + + V+G T  L +WD  G+E+
Sbjct: 1   KVVVIGDKGSGKSSLLSQLVGGEFPPEPLEIQGDTLAVDTLEVDGDTGLLNIWDFGGREE 60

Query: 67  YNRLRPLSYRGADVFILAFSLISKASYENVS--KKWIPELKHYAPGVPIILVGTKL 120
                 +  + AD  +L + L  + S   VS    W+P L+     +P+ILVG KL
Sbjct: 61  LKFEHIIFMKWADAILLVYDLTDRESLNEVSRLIAWLPNLRKLGGKIPVILVGNKL 116

Mitochondrial Rho proteins (Miro-1, and Miro-2), are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (pfam00036), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis. Length = 116

>gnl|CDD|206711 cd04140, ARHI_like, A Ras homolog member I (ARHI)

 Score = 73.7 bits (181), Expect = 8e-17
 Identities = 49/166 (29%), Positives = 83/166 (50%), Gaps = 14/166 (8%)

Query: 8   KCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQEDY 67
           + V  G G VGK+ L++ +   TF   Y+PT+ D +   +  + S   L + DT G   +
Sbjct: 3   RVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYRQVISCSKSICTLQITDTTGSHQF 62

Query: 68  NRLRPLSYRGADVFILAFSLISKASYENVSKKW--IPELK-HYAPGVPIILVGTKLDLRD 124
             ++ LS      FIL +S+ SK S E +   +  I E+K +    +PI+LVG K D   
Sbjct: 63  PAMQRLSISKGHAFILVYSITSKQSLEELKPIYELICEIKGNNLEKIPIMLVGNKCDESP 122

Query: 125 DKQFFIDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQQNVKAVF 170
            ++          +S+++G  L +     A++E S+KT  NV+ +F
Sbjct: 123 SRE----------VSSSEGAALARTWNC-AFMETSAKTNHNVQELF 157

ARHI (A Ras homolog member I) is a member of the Ras family with several unique structural and functional properties. ARHI is expressed in normal human ovarian and breast tissue, but its expression is decreased or eliminated in breast and ovarian cancer. ARHI contains an N-terminal extension of 34 residues (human) that is required to retain its tumor suppressive activity. Unlike most other Ras family members, ARHI is maintained in the constitutively active (GTP-bound) state in resting cells and has modest GTPase activity. ARHI inhibits STAT3 (signal transducers and activators of transcription 3), a latent transcription factor whose abnormal activation plays a critical role in oncogenesis. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 165

>gnl|CDD|133326 cd04126, Rab20, Rab GTPase family 20 (Rab20)

 Score = 74.6 bits (183), Expect = 1e-16
 Identities = 54/207 (26%), Positives = 84/207 (40%), Gaps = 28/207 (13%)

Query: 7   IKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQED 66
           +K V +GD  VGKT LL  Y    F  D V TV   F    +      N+ +WDTAG+E 
Sbjct: 1   LKVVLLGDMNVGKTSLLHRYMERRFK-DTVSTVGGAF---YLKQWGPYNISIWDTAGREQ 56

Query: 67  YNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLRDDK 126
           ++ L  +  RGA   IL + + +  S E +  +++             +VG KLDL ++ 
Sbjct: 57  FHGLGSMYCRGAAAVILTYDVSNVQSLEELEDRFLGLTDTANEDCLFAVVGNKLDLTEEG 116

Query: 127 QFFIDHPGAVPIST-------------AQGEELRKLIG-----APA----YIECSSKTQQ 164
                   A    +             A  + + K        +PA      E S+KT  
Sbjct: 117 ALAGQEKDAGDRVSPEDQRQVTLEDAKAFYKRINKYKMLDEDLSPAAEKMCFETSAKTGY 176

Query: 165 NVKAVFDAAIRVVLQPPKTKKKKNKAQ 191
           NV  +F+    +VL  P    ++ +A 
Sbjct: 177 NVDELFEYLFNLVL--PLILAQRAEAN 201

Rab20 is one of several Rab proteins that appear to be restricted in expression to the apical domain of murine polarized epithelial cells. It is expressed on the apical side of polarized kidney tubule and intestinal epithelial cells, and in non-polarized cells. It also localizes to vesico-tubular structures below the apical brush border of renal proximal tubule cells and in the apical region of duodenal epithelial cells. Rab20 has also been shown to colocalize with vacuolar H+-ATPases (V-ATPases) in mouse kidney cells, suggesting a role in the regulation of V-ATPase traffic in specific portions of the nephron. It was also shown to be one of several proteins whose expression is upregulated in human myelodysplastic syndrome (MDS) patients. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 220

>gnl|CDD|133321 cd04121, Rab40, Rab GTPase family 40 (Rab40) contains Rab40a, Rab40b and Rab40c

 Score = 74.2 bits (182), Expect = 1e-16
 Identities = 55/195 (28%), Positives = 92/195 (47%), Gaps = 16/195 (8%)

Query: 6   FIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTV-FDNFSANVVVNGSTVNLGLWDTAGQ 64
            +K + VGD  VGK  +L S    +  + Y   +  D  +  ++++G  V L LWDT+GQ
Sbjct: 6   LLKFLLVGDSDVGKGEILASLQDGSTESPYGYNMGIDYKTTTILLDGRRVKLQLWDTSGQ 65

Query: 65  EDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLRD 124
             +  +     RGA   IL + + ++ S++ + + WI E+  +APGVP ILVG +L L  
Sbjct: 66  GRFCTIFRSYSRGAQGIILVYDITNRWSFDGIDR-WIKEIDEHAPGVPKILVGNRLHLAF 124

Query: 125 DKQFFIDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQQNVKAVFDAAIRVVLQ---PP 181
            +Q          ++T Q +   +  G   + E S     N+   F    R+VL     P
Sbjct: 125 KRQ----------VATEQAQAYAERNGM-TFFEVSPLCNFNITESFTELARIVLMRHGRP 173

Query: 182 KTKKKKNKAQKACSI 196
                +N ++ +C I
Sbjct: 174 PQSPPQNCSRNSCKI 188

The Rab40 subfamily contains Rab40a, Rab40b, and Rab40c, which are all highly homologous. In rat, Rab40c is localized to the perinuclear recycling compartment (PRC), and is distributed in a tissue-specific manor, with high expression in brain, heart, kidney, and testis, low expression in lung and liver, and no expression in spleen and skeletal muscle. Rab40c is highly expressed in differentiated oligodendrocytes but minimally expressed in oligodendrocyte progenitors, suggesting a role in the vesicular transport of myelin components. Unlike most other Ras-superfamily proteins, Rab40c was shown to have a much lower affinity for GTP, and an affinity for GDP that is lower than for GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 189

>gnl|CDD|206714 cd04147, Ras_dva, Ras - dorsal-ventral anterior localization (Ras-dva) family

 Score = 73.3 bits (180), Expect = 2e-16
 Identities = 51/191 (26%), Positives = 87/191 (45%), Gaps = 17/191 (8%)

Query: 8   KCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQEDY 67
           + V +G   VGKT L+  +  +TF   +  TV +  S    V G  V + + DT+G   +
Sbjct: 1   RLVFMGAAGVGKTALIQRFLYDTFEPKHRRTVEELHSKEYEVAGVKVTIDILDTSGSYSF 60

Query: 68  NRLRPLSYRGADVFILAFSLISKASYENVS--KKWIPELKHYAPGVPIILVGTKLDLRDD 125
             +R LS +  D F L +S+    S+E V   ++ I E+K     VPI++VG K+D   +
Sbjct: 61  PAMRKLSIQNGDAFALVYSVDDPESFEEVKRLREEILEVKEDK-FVPIVVVGNKIDSLAE 119

Query: 126 KQFFIDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQQNVKAVFDAAIRVVLQP----P 181
           +Q          +  A      +L     ++E S+K  +NV  VF   ++    P    P
Sbjct: 120 RQ----------VEAADALSTVELDWNNGFVEASAKDNENVTEVFKELLQQANLPSWLSP 169

Query: 182 KTKKKKNKAQK 192
             ++++  A  
Sbjct: 170 ALRRRRESAPS 180

Ras-dva subfamily. Ras-dva (Ras - dorsal-ventral anterior localization) subfamily consists of a set of proteins characterized only in Xenopus leavis, to date. In Xenopus Ras-dva expression is activated by the transcription factor Otx2 and begins during gastrulation throughout the anterior ectoderm. Ras-dva expression is inhibited in the anterior neural plate by factor Xanf1. Downregulation of Ras-dva results in head development abnormalities through the inhibition of several regulators of the anterior neural plate and folds patterning, including Otx2, BF-1, Xag2, Pax6, Slug, and Sox9. Downregulation of Ras-dva also interferes with the FGF-8a signaling within the anterior ectoderm. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Length = 197

>gnl|CDD|178620 PLN03071, PLN03071, GTP-binding nuclear protein Ran; Provisional

 Score = 73.2 bits (180), Expect = 4e-16
 Identities = 39/126 (30%), Positives = 60/126 (47%), Gaps = 12/126 (9%)

Query: 7   IKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTV------FDNFSANVVVNGSTVNLGLWD 60
            K V VGDG  GKT  +  + +  F   Y PT+       D F+     N   +    WD
Sbjct: 14  FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFT-----NCGKIRFYCWD 68

Query: 61  TAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKL 120
           TAGQE +  LR   Y      I+ F + ++ +Y+NV   W  +L      +PI+L G K+
Sbjct: 69  TAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVP-TWHRDLCRVCENIPIVLCGNKV 127

Query: 121 DLRDDK 126
           D+++ +
Sbjct: 128 DVKNRQ 133

Length = 219

>gnl|CDD|206692 cd04107, Rab32_Rab38, Rab GTPase families 18 (Rab18) and 32 (Rab32)

 Score = 72.0 bits (177), Expect = 8e-16
 Identities = 46/178 (25%), Positives = 79/178 (44%), Gaps = 17/178 (9%)

Query: 8   KCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVV--NGSTVNLGLWDTAGQE 65
           K + +GD  VGKT ++  Y    F   Y  T+  +F+  V+     + V L LWD AGQE
Sbjct: 2   KVLVIGDLGVGKTSIIKRYVHGVFSQHYKATIGVDFALKVIEWDPNTVVRLQLWDIAGQE 61

Query: 66  DYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELK---HYAPG--VPIILVGTKL 120
            +  +  + Y+GA   I+ F +   +++E V  KW  +L        G  +P +L+  K 
Sbjct: 62  RFGGMTRVYYKGAVGAIIVFDVTRPSTFEAVL-KWKADLDSKVTLPNGEPIPALLLANKC 120

Query: 121 DLRDDKQFFIDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQQNVKAVFDAAIRVVL 178
           DL+            +     Q ++  K  G   + E S+K   N++      ++ +L
Sbjct: 121 DLK---------KERLAKDPEQMDQFCKENGFIGWFETSAKENINIEEAMRFLVKNIL 169

Rab38/Rab32 subfamily. Rab32 and Rab38 are members of the Rab family of small GTPases. Human Rab32 was first identified in platelets but it is expressed in a variety of cell types, where it functions as an A-kinase anchoring protein (AKAP). Rab38 has been shown to be melanocyte-specific. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 201

>gnl|CDD|206701 cd04128, Spg1, Septum-promoting GTPase (Spg1)

 Score = 70.5 bits (173), Expect = 2e-15
 Identities = 47/169 (27%), Positives = 80/169 (47%), Gaps = 16/169 (9%)

Query: 7   IKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNF-SANVVVNGSTVNLGLWDTAGQE 65
           +K   +GD  +GKT L++ Y    F  +Y+ T+  NF    + + G+ +   +WD  GQ 
Sbjct: 1   LKIGLLGDAQIGKTSLMVKYVEGEFDEEYIQTLGVNFMEKTISIRGTEITFSIWDLGGQR 60

Query: 66  DYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLD---- 121
           ++  + PL  + A   +  F L  K++  ++ K+W  + + +      ILVGTK D    
Sbjct: 61  EFINMLPLVCKDAVAILFMFDLTRKSTLNSI-KEWYRQARGFNKTAIPILVGTKYDLFAD 119

Query: 122 LRDDKQFFIDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQQNVKAVF 170
           L  ++Q  I         T Q  +  K + AP  I CS+    NV+ +F
Sbjct: 120 LPPEEQEEI---------TKQARKYAKAMKAP-LIFCSTSHSINVQKIF 158

Spg1p. Spg1p (septum-promoting GTPase) was first identified in the fission yeast S. pombe, where it regulates septum formation in the septation initiation network (SIN) through the cdc7 protein kinase. Spg1p is an essential gene that localizes to the spindle pole bodies. When GTP-bound, it binds cdc7 and causes it to translocate to spindle poles. Sid4p (septation initiation defective) is required for localization of Spg1p to the spindle pole body, and the ability of Spg1p to promote septum formation from any point in the cell cycle depends on Sid4p. Spg1p is negatively regulated by Byr4 and cdc16, which form a two-component GTPase activating protein (GAP) for Spg1p. The existence of a SIN-related pathway in plants has been proposed. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Length = 182

>gnl|CDD|133319 cd04119, RJL, Rab GTPase family J-like (RabJ-like)

 Score = 69.7 bits (171), Expect = 3e-15
 Identities = 39/173 (22%), Positives = 73/173 (42%), Gaps = 19/173 (10%)

Query: 7   IKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTV-FDNFSANVVVNGSTVNLGLWDTAGQE 65
           IK +++G+  VGK+C++  Y    F + Y+PT+  D     V V    V +  +D +G  
Sbjct: 1   IKVISMGNSGVGKSCIIKRYCEGRFVSKYLPTIGIDYGVKKVSVRNKEVRVNFFDLSGHP 60

Query: 66  DYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPG------VPIILVGTK 119
           +Y  +R   Y+     +L + +  + S+E +   W+ E+K           + +++   K
Sbjct: 61  EYLEVRNEFYKDTQGVLLVYDVTDRQSFEALD-SWLKEMKQEGGPHGNMENIVVVVCANK 119

Query: 120 LDLRDDKQFFIDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQQNVKAVFDA 172
                     ID      +S  +G    +  G   Y E S+ T + V  +F  
Sbjct: 120 ----------IDLTKHRAVSEDEGRLWAESKGF-KYFETSACTGEGVNEMFQT 161

RJLs are found in many protists and as chimeras with C-terminal DNAJ domains in deuterostome metazoa. They are not found in plants, fungi, and protostome metazoa, suggesting a horizontal gene transfer between protists and deuterostome metazoa. RJLs lack any known membrane targeting signal and contain a degenerate phosphate/magnesium-binding 3 (PM3) motif, suggesting an impaired ability to hydrolyze GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Length = 168

>gnl|CDD|133343 cd04143, Rhes_like, Ras homolog enriched in striatum (Rhes) and activator of G-protein signaling 1 (Dexras1/AGS1)

 Score = 70.5 bits (173), Expect = 6e-15
 Identities = 52/175 (29%), Positives = 78/175 (44%), Gaps = 25/175 (14%)

Query: 10  VTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQEDYNR 69
           V +G   VGKT ++  +    F   Y PT+ D       + G    L + DT+G   +  
Sbjct: 4   VVLGASKVGKTAIVSRFLGGRFEEQYTPTIEDFHRKLYSIRGEVYQLDILDTSGNHPFPA 63

Query: 70  LRPLSYRGADVFILAFSLISKASYENVS--KKWIPELKHYA-------PGVPIILVGTKL 120
           +R LS    DVFIL FSL ++ S+E V   ++ I E K            +P+++ G K 
Sbjct: 64  MRRLSILTGDVFILVFSLDNRESFEEVCRLREQILETKSCLKNKTKENVKIPMVICGNKA 123

Query: 121 DLRDDKQFFIDHPGAVPISTAQGEELRKLIGAP---AYIECSSKTQQNVKAVFDA 172
           D         D P  V     Q +E+ +L+G     AY E S+K   N+  +F A
Sbjct: 124 DR--------DFPREV-----QRDEVEQLVGGDENCAYFEVSAKKNSNLDEMFRA 165

This subfamily includes Rhes (Ras homolog enriched in striatum) and Dexras1/AGS1 (activator of G-protein signaling 1). These proteins are homologous, but exhibit significant differences in tissue distribution and subcellular localization. Rhes is found primarily in the striatum of the brain, but is also expressed in other areas of the brain, such as the cerebral cortex, hippocampus, inferior colliculus, and cerebellum. Rhes expression is controlled by thyroid hormones. In rat PC12 cells, Rhes is farnesylated and localizes to the plasma membrane. Rhes binds and activates PI3K, and plays a role in coupling serpentine membrane receptors with heterotrimeric G-protein signaling. Rhes has recently been shown to be reduced under conditions of dopamine supersensitivity and may play a role in determining dopamine receptor sensitivity. Dexras1/AGS1 is a dexamethasone-induced Ras protein that is expressed primarily in the brain, with low expression levels in other tissues. Dexras1 localizes primarily to the cytoplasm, and is a critical regulator of the circadian master clock to photic and nonphotic input. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Length = 247

>gnl|CDD|206715 cd04148, RGK, Rem, Rem2, Rad, Gem/Kir (RGK) subfamily of Ras GTPases

 Score = 69.7 bits (171), Expect = 7e-15
 Identities = 52/192 (27%), Positives = 87/192 (45%), Gaps = 18/192 (9%)

Query: 8   KCVTVGDGAVGKTCL-LISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQED 66
           + V +GD  VGK+ L  I        + Y  +  D +   V V+G    L ++D   QED
Sbjct: 2   RVVLLGDSGVGKSSLANIFTAGVYEDSAYEASGDDTYERTVSVDGEEATLVVYDHWEQED 61

Query: 67  YNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELK--HYAPGVPIILVGTKLDLRD 124
              L     +  D +++ +S+  ++S+E  S+  I +L+    A  +PIILVG K DL  
Sbjct: 62  GMWLEDSCMQVGDAYVIVYSVTDRSSFEKASELRI-QLRRARQAEDIPIILVGNKSDLVR 120

Query: 125 DKQFFIDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQQNVKAVFDAAIRVV-LQPPKT 183
            ++          +S  +G     +     +IE S+  Q NV  +F+  +R V L+    
Sbjct: 121 SRE----------VSVQEGRACAVVFDC-KFIETSAALQHNVDELFEGIVRQVRLRRD-- 167

Query: 184 KKKKNKAQKACS 195
            K+KN  + A  
Sbjct: 168 SKEKNTRRMASR 179

RGK subfamily. The RGK (Rem, Rem2, Rad, Gem/Kir) subfamily of Ras GTPases are expressed in a tissue-specific manner and are dynamically regulated by transcriptional and posttranscriptional mechanisms in response to environmental cues. RGK proteins bind to the beta subunit of L-type calcium channels, causing functional down-regulation of these voltage-dependent calcium channels, and either termination of calcium-dependent secretion or modulation of electrical conduction and contractile function. Inhibition of L-type calcium channels by Rem2 may provide a mechanism for modulating calcium-triggered exocytosis in hormone-secreting cells, and has been proposed to influence the secretion of insulin in pancreatic beta cells. RGK proteins also interact with and inhibit the Rho/Rho kinase pathway to modulate remodeling of the cytoskeleton. Two characteristics of RGK proteins cited in the literature are N-terminal and C-terminal extensions beyond the GTPase domain typical of Ras superfamily members. The N-terminal extension is not conserved among family members; the C-terminal extension is reported to be conserved among the family and lack the CaaX prenylation motif typical of membrane-associated Ras proteins. However, a putative CaaX motif has been identified in the alignment of the C-terminal residues of this CD. Length = 219

>gnl|CDD|128473 smart00176, RAN, Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases

 Score = 67.7 bits (165), Expect = 3e-14
 Identities = 37/116 (31%), Positives = 57/116 (49%), Gaps = 2/116 (1%)

Query: 12  VGDGAVGKTCLLISYTSNTFPTDYVPTV-FDNFSANVVVNGSTVNLGLWDTAGQEDYNRL 70
           VGDG  GKT  +  + +  F   YV T+  +        N   +   +WDTAGQE +  L
Sbjct: 1   VGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIRFNVWDTAGQEKFGGL 60

Query: 71  RPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLRDDK 126
           R   Y      I+ F + ++ +Y+NV   W  +L      +PI+L G K+D++D K
Sbjct: 61  RDGYYIQGQCAIIMFDVTARVTYKNVP-NWHRDLVRVCENIPIVLCGNKVDVKDRK 115

Ran is involved in the active transport of proteins through nuclear pores. Length = 200

>gnl|CDD|206741 cd09914, RocCOR, Ras of complex proteins (Roc) C-terminal of Roc (COR) domain family

 Score = 66.6 bits (163), Expect = 4e-14
 Identities = 41/159 (25%), Positives = 60/159 (37%), Gaps = 17/159 (10%)

Query: 7   IKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTV---FDNFSANVVVNGSTVNLGLWDTAG 63
            K + VG G VGKT L        F  D   T      ++          + L +WD  G
Sbjct: 2   AKLMLVGQGGVGKTSLCKQLIGEKFDGDESSTHGINVQDWK-IPAPERKKIRLNVWDFGG 60

Query: 64  QEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLR 123
           QE Y+           +++L F L +      V   W+ ++K +    P+ILVGT +D  
Sbjct: 61  QEIYHATHQFFLTSRSLYLLVFDLRTGDEVSRV-PYWLRQIKAFGGVSPVILVGTHIDES 119

Query: 124 DD---------KQFFIDHPGAVPISTAQG---EELRKLI 150
            D         K+F         +S   G    EL+K I
Sbjct: 120 CDEDILKKALNKKFPAIINDIHFVSCKNGKGIAELKKAI 158

RocCOR (or Roco) protein family is characterized by a superdomain containing a Ras-like GTPase domain, called Roc (Ras of complex proteins), and a characteristic second domain called COR (C-terminal of Roc). A kinase domain and diverse regulatory domains are also often found in Roco proteins. Their functions are diverse; in Dictyostelium discoideum, which encodes 11 Roco proteins, they are involved in cell division, chemotaxis and development, while in human, where 4 Roco proteins (LRRK1, LRRK2, DAPK1, and MFHAS1) are encoded, these proteins are involved in epilepsy and cancer. Mutations in LRRK2 (leucine-rich repeat kinase 2) are known to cause familial Parkinson's disease. Length = 161

>gnl|CDD|185444 PTZ00099, PTZ00099, rab6; Provisional

 Score = 58.6 bits (141), Expect = 4e-11
 Identities = 43/144 (29%), Positives = 69/144 (47%), Gaps = 14/144 (9%)

Query: 29  NTFPTDYVPTV-FDNFSANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSL 87
           +TF  +Y  T+  D  S  + ++   V L LWDTAGQE +  L P   R +   I+ + +
Sbjct: 3   DTFDNNYQSTIGIDFLSKTLYLDEGPVRLQLWDTAGQERFRSLIPSYIRDSAAAIVVYDI 62

Query: 88  ISKASYENVSKKWIPE-LKHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPISTAQGEEL 146
            ++ S+EN + KWI + L      V I LVG K DL D ++   +          + +E 
Sbjct: 63  TNRQSFENTT-KWIQDILNERGKDVIIALVGNKTDLGDLRKVTYEE------GMQKAQEY 115

Query: 147 RKLIGAPAYIECSSKTQQNVKAVF 170
             +     + E S+K   N+K +F
Sbjct: 116 NTM-----FHETSAKAGHNIKVLF 134

Length = 176

>gnl|CDD|206694 cd04109, Rab28, Rab GTPase family 28 (Rab28)

 Score = 56.3 bits (136), Expect = 5e-10
 Identities = 40/127 (31%), Positives = 61/127 (48%), Gaps = 7/127 (5%)

Query: 7   IKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTV-FDNFSANVVVNGS-TVNLGLWDTAGQ 64
           IK V +GDGA GKT L+  +    F   Y  T+  D FS  + + GS  V L +WD  GQ
Sbjct: 1   IKIVVLGDGASGKTSLIRRFAQEGFGKSYKQTIGLDFFSRRITLPGSLNVTLQVWDIGGQ 60

Query: 65  EDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPG----VPIILVGTKL 120
           +   ++      GA    L + + +  S+EN+   W+  +K           ++LVG K 
Sbjct: 61  QIGGKMLDKYIYGAQAVCLVYDITNSQSFENLE-DWLSVVKKVNEESETKPKMVLVGNKT 119

Query: 121 DLRDDKQ 127
           DL  ++Q
Sbjct: 120 DLEHNRQ 126

Rab28 subfamily. First identified in maize, Rab28 has been shown to be a late embryogenesis-abundant (Lea) protein that is regulated by the plant hormone abcisic acid (ABA). In Arabidopsis, Rab28 is expressed during embryo development and is generally restricted to provascular tissues in mature embryos. Unlike maize Rab28, it is not ABA-inducible. Characterization of the human Rab28 homolog revealed two isoforms, which differ by a 95-base pair insertion, producing an alternative sequence for the 30 amino acids at the C-terminus. The two human isoforms are presumably the result of alternative splicing. Since they differ at the C-terminus but not in the GTP-binding region, they are predicted to be targeted to different cellular locations. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 213

>gnl|CDD|133342 cd04142, RRP22, Ras-related protein on chromosome 22 (RRP22) family

 Score = 48.3 bits (115), Expect = 4e-07
 Identities = 46/180 (25%), Positives = 78/180 (43%), Gaps = 24/180 (13%)

Query: 12  VGDGAVGKTCLLISYTSNTFPTDYVPTVFDN-FSANVVVNGSTVNLGLWD---------T 61
           +G   VGKT ++  + +  FP +Y+PT     +   VV++G   +L + D         T
Sbjct: 6   LGAPGVGKTAIVRQFLAQEFPEEYIPTEHRRLYRPAVVLSGRVYDLHILDVPNMQRYPGT 65

Query: 62  AGQEDYNRLRPLSYRGADVFILAFSLISKASYENVS--KKWIPELKHY-APGVPIILVGT 118
           AGQE +   R    R +  FIL + + S  S+  V   ++ I E +       PI++VG 
Sbjct: 66  AGQE-WMDPRFRGLRNSRAFILVYDICSPDSFHYVKLLRQQILETRPAGNKEPPIVVVGN 124

Query: 119 KLDLRDDKQFFIDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQQNVKAVFDAAIRVVL 178
           K D +  + F   H  +V         L +      Y+ECS+K   ++  +F   +    
Sbjct: 125 KRDQQRHR-FAPRHVLSV---------LVRKSWKCGYLECSAKYNWHILLLFKELLISAT 174

RRP22 (Ras-related protein on chromosome 22) subfamily consists of proteins that inhibit cell growth and promote caspase-independent cell death. Unlike most Ras proteins, RRP22 is down-regulated in many human tumor cells due to promoter methylation. RRP22 localizes to the nucleolus in a GTP-dependent manner, suggesting a novel function in modulating transport of nucleolar components. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Like most Ras family proteins, RRP22 is farnesylated. Length = 198

>gnl|CDD|133303 cd04103, Centaurin_gamma, Centaurin gamma (CENTG) GTPase

 Score = 43.6 bits (103), Expect = 9e-06
 Identities = 45/169 (26%), Positives = 73/169 (43%), Gaps = 20/169 (11%)

Query: 12  VGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQEDYNRLR 71
           VG+   GK+ L+  Y + ++     P     F   V+V+G +  L + D  G  D     
Sbjct: 6   VGNLRSGKSALVHRYLTGSYVQLESPEG-GRFKKEVLVDGQSHLLLIRDEGGAPD----- 59

Query: 72  PLSYRG-ADVFILAFSLISKASYENVSKKWIPELKHYAP--GVPIILVGTKLDLRDDKQF 128
              + G  D  I  FSL  +AS++ V  +   +L  Y     +P+ILVGT+     D   
Sbjct: 60  -AQFAGWVDAVIFVFSLEDEASFQTVY-RLYHQLSSYRNISEIPLILVGTQ-----DA-- 110

Query: 129 FIDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQQNVKAVF-DAAIRV 176
            I       I  A+  +L   +   +Y E  +    NV+ VF +AA ++
Sbjct: 111 -ISASNPRVIDDARARQLCADMKRCSYYETCATYGLNVERVFQEAAQKI 158

The centaurins (alpha, beta, gamma, and delta) are large, multi-domain proteins that all contain an ArfGAP domain and ankyrin repeats, and in some cases, numerous additional domains. Centaurin gamma contains an additional GTPase domain near its N-terminus. The specific function of this GTPase domain has not been well characterized, but centaurin gamma 2 (CENTG2) may play a role in the development of autism. Centaurin gamma 1 is also called PIKE (phosphatidyl inositol (PI) 3-kinase enhancer) and centaurin gamma 2 is also known as AGAP (ArfGAP protein with a GTPase-like domain, ankyrin repeats and a Pleckstrin homology domain) or GGAP. Three isoforms of PIKE have been identified. PIKE-S (short) and PIKE-L (long) are brain-specific isoforms, with PIKE-S restricted to the nucleus and PIKE-L found in multiple cellular compartments. A third isoform, PIKE-A was identified in human glioblastoma brain cancers and has been found in various tissues. GGAP has been shown to have high GTPase activity due to a direct intramolecular interaction between the N-terminal GTPase domain and the C-terminal ArfGAP domain. In human tissue, AGAP mRNA was detected in skeletal muscle, kidney, placenta, brain, heart, colon, and lung. Reduced expression levels were also observed in the spleen, liver, and small intestine. Length = 158

>gnl|CDD|206724 cd04159, Arl10_like, Arf-like 9 (Arl9) and 10 (Arl10) GTPases

 Score = 41.9 bits (99), Expect = 4e-05
 Identities = 36/116 (31%), Positives = 54/116 (46%), Gaps = 12/116 (10%)

Query: 12  VGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQEDYNRLR 71
           VG    GKT L+    S  F  D +PTV   F+   V  G+ V + +WD  GQ    R R
Sbjct: 5   VGLQNSGKTTLVNVIASGQFSEDTIPTV--GFNMRKVTKGN-VTIKVWDLGGQP---RFR 58

Query: 72  PL--SY-RGADVFILAFSLISKASYENVSKKWIPEL--KHYAPGVPIILVGTKLDL 122
            +   Y RG +  +       +   E V+K  + +L  K    G+P++++G K DL
Sbjct: 59  SMWERYCRGVNAIVYVVDAADREKLE-VAKNELHDLLEKPSLEGIPLLVLGNKNDL 113

Arl10-like subfamily. Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved. Length = 159

>gnl|CDD|206689 cd04102, RabL3, Rab GTPase-like family 3 (Rab-like3)

 Score = 38.3 bits (89), Expect = 0.001
 Identities = 42/200 (21%), Positives = 68/200 (34%), Gaps = 32/200 (16%)

Query: 7   IKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGS------TVNLGLWD 60
           +K + +GD  VGK+ L+     N    +   TV  +        G       T  + LWD
Sbjct: 1   VKVLVLGDSGVGKSSLVHLLCKNQVLGNPSWTVGCSVDVRHHTYGEGTPEEKTFYVELWD 60

Query: 61  TAGQ----EDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPEL------------ 104
             G     E     R + Y   +  I    L +K S +N+  +W  E             
Sbjct: 61  VGGSVGSAESVKSTRAVFYNQINGIIFVHDLTNKKSSQNL-YRWSLEALNRDTFPAGLLV 119

Query: 105 --KHYAPG------VPIILVGTKLD-LRDDKQFFIDHPGAVPISTAQGEELRKLIGAPAY 155
               Y         VP++++GTKLD + + K+ ++    A        EE+         
Sbjct: 120 TNGDYDSEQFAGNPVPLLVIGTKLDQIPEAKRNWVLTRTAFLSEDFNAEEINLDCTNGRL 179

Query: 156 IECSSKTQQNVKAVFDAAIR 175
           +   S     +   FD  I 
Sbjct: 180 LAAGSSNAVKLSRFFDKVIE 199

RabL3 (Rab-like3) subfamily. RabL3s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL3 lacks a prenylation site at the C-terminus. The specific function of RabL3 remains unknown. Length = 204

>gnl|CDD|206719 cd04152, Arl4_Arl7, Arf-like 4 (Arl4) and 7 (Arl7) GTPases

 Score = 37.9 bits (88), Expect = 0.001
 Identities = 49/201 (24%), Positives = 84/201 (41%), Gaps = 46/201 (22%)

Query: 10  VTVGDGAVGKTCLLISYTSNTFPTDYVPTV-FDNFSANVVV-NGSTVNLGLWDTAGQEDY 67
           V +G  + GKT +L     N F  + VPT  F+     V + N   V    WD  GQE  
Sbjct: 7   VMLGLDSAGKTTVLYRLKFNEF-VNTVPTKGFNTEKIKVSLGNAKGVTFHFWDVGGQE-- 63

Query: 68  NRLRPL--SY-RGADVFILAFSLI-------SKASYENVSKKWIPELKHYAPGVPIILVG 117
            +LRPL  SY R  D  +     +       +K     ++K    E +    GVP++++ 
Sbjct: 64  -KLRPLWKSYTRCTDGIVFVVDSVDVERMEEAKTELHKITK--FSENQ----GVPVLVLA 116

Query: 118 TKLDLRDDKQFFIDHPGAVPISTAQGEELRKLIG-------APAYIE-CSSKTQQNVKAV 169
            K DL          P A+P+S     E+ KL+         P +++   +   + ++  
Sbjct: 117 NKQDL----------PNALPVS-----EVEKLLALHELSSSTPWHVQPACAIIGEGLQEG 161

Query: 170 FDAAIRVVLQPPKT-KKKKNK 189
            +    ++L+  K  +++K K
Sbjct: 162 LEKLYEMILKRRKMLRQQKKK 182

Arl4 (Arf-like 4) is highly expressed in testicular germ cells, and is found in the nucleus and nucleolus. In mice, Arl4 is developmentally expressed during embryogenesis, and a role in somite formation and central nervous system differentiation has been proposed. Arl7 has been identified as the only Arf/Arl protein to be induced by agonists of liver X-receptor and retinoid X-receptor and by cholesterol loading in human macrophages. Arl7 is proposed to play a role in transport between a perinuclear compartment and the plasma membrane, apparently linked to the ABCA1-mediated cholesterol secretion pathway. Older literature suggests that Arl6 is a part of the Arl4/Arl7 subfamily, but analyses based on more recent sequence data place Arl6 in its own subfamily. Length = 183

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	197
KOG0092	200	consensus GTPase Rab5/YPT51 and related small G pr	100.0
KOG0084	205	consensus GTPase Rab1/YPT1, small G protein superf	100.0
cd01875	191	RhoG RhoG subfamily. RhoG is a GTPase with high se	100.0
cd04133	176	Rop_like Rop subfamily. The Rop (Rho-related prote	100.0
cd04174	232	Rnd1_Rho6 Rnd1/Rho6 subfamily. Rnd1/Rho6 is a memb	100.0
KOG0094	221	consensus GTPase Rab6/YPT6/Ryh1, small G protein s	100.0
cd04172	182	Rnd3_RhoE_Rho8 Rnd3/RhoE/Rho8 subfamily. Rnd3/RhoE	100.0
cd04121	189	Rab40 Rab40 subfamily. This subfamily contains Rab	100.0
KOG0080	209	consensus GTPase Rab18, small G protein superfamil	100.0
cd04134	189	Rho3 Rho3 subfamily. Rho3 is a member of the Rho f	100.0
cd04132	187	Rho4_like Rho4-like subfamily. Rho4 is a GTPase th	100.0
cd04131	178	Rnd Rnd subfamily. The Rnd subfamily contains Rnd1	100.0
KOG0078	207	consensus GTP-binding protein SEC4, small G protei	100.0
cd04173	222	Rnd2_Rho7 Rnd2/Rho7 subfamily. Rnd2/Rho7 is a memb	100.0
KOG0098	216	consensus GTPase Rab2, small G protein superfamily	100.0
cd04144	190	Ras2 Ras2 subfamily. The Ras2 subfamily, found exc	100.0
cd04120	202	Rab12 Rab12 subfamily. Rab12 was first identified	100.0
cd01874	175	Cdc42 Cdc42 subfamily. Cdc42 is an essential GTPas	100.0
PTZ00369	189	Ras-like protein; Provisional	100.0
cd04141	172	Rit_Rin_Ric Rit/Rin/Ric subfamily. Rit (Ras-like p	100.0
cd01871	174	Rac1_like Rac1-like subfamily. The Rac1-like subfa	100.0
KOG0394	210	consensus Ras-related GTPase [General function pre	100.0
KOG0079	198	consensus GTP-binding protein H-ray, small G prote	100.0
smart00174	174	RHO Rho (Ras homology) subfamily of Ras-like small	100.0
cd04122	166	Rab14 Rab14 subfamily. Rab14 GTPases are localized	100.0
cd04107	201	Rab32_Rab38 Rab38/Rab32 subfamily. Rab32 and Rab38	100.0
cd04136	163	Rap_like Rap-like subfamily. The Rap subfamily con	100.0
cd04109	215	Rab28 Rab28 subfamily. First identified in maize,	100.0
KOG0087	222	consensus GTPase Rab11/YPT3, small G protein super	100.0
cd04125	188	RabA_like RabA-like subfamily. RabA was first iden	100.0
cd04175	164	Rap1 Rap1 subgroup. The Rap1 subgroup is part of t	100.0
KOG0093	193	consensus GTPase Rab3, small G protein superfamily	100.0
cd04130	173	Wrch_1 Wrch-1 subfamily. Wrch-1 (Wnt-1 responsive	100.0
cd04110	199	Rab35 Rab35 subfamily. Rab35 is one of several Rab	100.0
cd04117	161	Rab15 Rab15 subfamily. Rab15 colocalizes with the	100.0
cd01867	167	Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2. Rab8/Sec4/Yp	100.0
cd04135	174	Tc10 TC10 subfamily. TC10 is a Rho family protein	100.0
cd04127	180	Rab27A Rab27a subfamily. The Rab27a subfamily cons	100.0
cd04128	182	Spg1 Spg1p. Spg1p (septum-promoting GTPase) was fi	100.0
KOG0086	214	consensus GTPase Rab4, small G protein superfamily	100.0
PF00071	162	Ras: Ras family; InterPro: IPR001806 Small GTPases	100.0
cd04126	220	Rab20 Rab20 subfamily. Rab20 is one of several Rab	100.0
PLN03071	219	GTP-binding nuclear protein Ran; Provisional	100.0
cd04176	163	Rap2 Rap2 subgroup. The Rap2 subgroup is part of t	100.0
cd01865	165	Rab3 Rab3 subfamily. The Rab3 subfamily contains R	100.0
cd04140	165	ARHI_like ARHI subfamily. ARHI (A Ras homolog memb	100.0
cd04145	164	M_R_Ras_like M-Ras/R-Ras-like subfamily. This subf	100.0
KOG0393	198	consensus Ras-related small GTPase, Rho type [Gene	100.0
cd01873	195	RhoBTB RhoBTB subfamily. Members of the RhoBTB sub	100.0
cd04112	191	Rab26 Rab26 subfamily. First identified in rat pan	100.0
smart00173	164	RAS Ras subfamily of RAS small GTPases. Similar in	100.0
cd04138	162	H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily. H-Ras,	100.0
cd01869	166	Rab1_Ypt1 Rab1/Ypt1 subfamily. Rab1 is found in ev	100.0
cd04124	161	RabL2 RabL2 subfamily. RabL2 (Rab-like2) subfamily	100.0
cd04129	187	Rho2 Rho2 subfamily. Rho2 is a fungal GTPase that	100.0
cd00877	166	Ran Ran (Ras-related nuclear proteins) /TC4 subfam	100.0
cd04106	162	Rab23_lke Rab23-like subfamily. Rab23 is a member	100.0
cd04118	193	Rab24 Rab24 subfamily. Rab24 is distinct from othe	100.0
cd01864	165	Rab19 Rab19 subfamily. Rab19 proteins are associat	100.0
cd04142	198	RRP22 RRP22 subfamily. RRP22 (Ras-related protein	100.0
cd04119	168	RJL RJL (RabJ-Like) subfamily. RJLs are found in m	100.0
cd01870	175	RhoA_like RhoA-like subfamily. The RhoA subfamily	100.0
cd04108	170	Rab36_Rab34 Rab34/Rab36 subfamily. Rab34, found pr	100.0
cd04103	158	Centaurin_gamma Centaurin gamma. The centaurins (a	100.0
KOG0088	218	consensus GTPase Rab21, small G protein superfamil	100.0
cd04113	161	Rab4 Rab4 subfamily. Rab4 has been implicated in n	100.0
cd04116	170	Rab9 Rab9 subfamily. Rab9 is found in late endosom	100.0
cd04111	211	Rab39 Rab39 subfamily. Found in eukaryotes, Rab39	100.0
cd01866	168	Rab2 Rab2 subfamily. Rab2 is localized on cis-Golg	100.0
PLN03110	216	Rab GTPase; Provisional	100.0
cd01868	165	Rab11_like Rab11-like. Rab11a, Rab11b, and Rab25 a	100.0
cd04115	170	Rab33B_Rab33A Rab33B/Rab33A subfamily. Rab33B is u	100.0
PLN03108	210	Rab family protein; Provisional	100.0
cd04177	168	RSR1 RSR1 subgroup. RSR1/Bud1p is a member of the	100.0
smart00176	200	RAN Ran (Ras-related nuclear proteins) /TC4 subfam	100.0
cd04143	247	Rhes_like Rhes_like subfamily. This subfamily incl	100.0
KOG0095	213	consensus GTPase Rab30, small G protein superfamil	100.0
cd04146	165	RERG_RasL11_like RERG/RasL11-like subfamily. RERG	100.0
cd01892	169	Miro2 Miro2 subfamily. Miro (mitochondrial Rho) pr	100.0
cd04101	164	RabL4 RabL4 (Rab-like4) subfamily. RabL4s are nove	100.0
smart00175	164	RAB Rab subfamily of small GTPases. Rab GTPases ar	100.0
cd00157	171	Rho Rho (Ras homology) family. Members of the Rho	100.0
cd01861	161	Rab6 Rab6 subfamily. Rab6 is involved in microtubu	100.0
cd04137	180	RheB Rheb (Ras Homolog Enriched in Brain) subfamil	100.0
cd01860	163	Rab5_related Rab5-related subfamily. This subfamil	100.0
KOG0395	196	consensus Ras-related GTPase [General function pre	100.0
KOG0091	213	consensus GTPase Rab39, small G protein superfamil	100.0
cd01862	172	Rab7 Rab7 subfamily. Rab7 is a small Rab GTPase th	100.0
cd04148	221	RGK RGK subfamily. The RGK (Rem, Rem2, Rad, Gem/Ki	100.0
PLN03118	211	Rab family protein; Provisional	100.0
cd04123	162	Rab21 Rab21 subfamily. The localization and functi	100.0
cd04139	164	RalA_RalB RalA/RalB subfamily. The Ral (Ras-like)	100.0
cd01863	161	Rab18 Rab18 subfamily. Mammalian Rab18 is implicat	100.0
cd04114	169	Rab30 Rab30 subfamily. Rab30 appears to be associa	100.0
cd01893	166	Miro1 Miro1 subfamily. Miro (mitochondrial Rho) pr	100.0
PLN00223	181	ADP-ribosylation factor; Provisional	100.0
KOG0081	219	consensus GTPase Rab27, small G protein superfamil	100.0
cd04149	168	Arf6 Arf6 subfamily. Arf6 (ADP ribosylation factor	100.0
cd00876	160	Ras Ras family. The Ras family of the Ras superfam	100.0
KOG0097	215	consensus GTPase Rab14, small G protein superfamil	99.98
cd04147	198	Ras_dva Ras-dva subfamily. Ras-dva (Ras - dorsal-v	99.98
KOG0083	192	consensus GTPase Rab26/Rab37, small G protein supe	99.98
cd00154	159	Rab Rab family. Rab GTPases form the largest famil	99.98
cd04158	169	ARD1 ARD1 subfamily. ARD1 (ADP-ribosylation factor	99.98
cd04152	183	Arl4_Arl7 Arl4/Arl7 subfamily. Arl4 (Arf-like 4) i	99.98
cd04162	164	Arl9_Arfrp2_like Arl9/Arfrp2-like subfamily. Arl9	99.97
smart00177	175	ARF ARF-like small GTPases; ARF, ADP-ribosylation	99.97
PTZ00133	182	ADP-ribosylation factor; Provisional	99.97
cd04150	159	Arf1_5_like Arf1-Arf5-like subfamily. This subfami	99.97
PTZ00132	215	GTP-binding nuclear protein Ran; Provisional	99.97
cd04154	173	Arl2 Arl2 subfamily. Arl2 (Arf-like 2) GTPases are	99.97
cd04102	202	RabL3 RabL3 (Rab-like3) subfamily. RabL3s are nove	99.97
cd04153	174	Arl5_Arl8 Arl5/Arl8 subfamily. Arl5 (Arf-like 5) a	99.97
cd04157	162	Arl6 Arl6 subfamily. Arl6 (Arf-like 6) forms a sub	99.96
cd04161	167	Arl2l1_Arl13_like Arl2l1/Arl13 subfamily. Arl2l1 (	99.96
cd04151	158	Arl1 Arl1 subfamily. Arl1 (Arf-like 1) localizes t	99.96
cd00879	190	Sar1 Sar1 subfamily. Sar1 is an essential componen	99.96
PF00025	175	Arf: ADP-ribosylation factor family The prints ent	99.96
cd04156	160	ARLTS1 ARLTS1 subfamily. ARLTS1 (Arf-like tumor su	99.96
cd04160	167	Arfrp1 Arfrp1 subfamily. Arfrp1 (Arf-related prote	99.96
PLN00023	334	GTP-binding protein; Provisional	99.96
smart00178	184	SAR Sar1p-like members of the Ras-family of small	99.96
PTZ00099	176	rab6; Provisional	99.96
cd00878	158	Arf_Arl Arf (ADP-ribosylation factor)/Arl (Arf-lik	99.95
cd01897	168	NOG NOG1 is a nucleolar GTP-binding protein presen	99.95
cd04159	159	Arl10_like Arl10-like subfamily. Arl9/Arl10 was id	99.95
cd01890	179	LepA LepA subfamily. LepA belongs to the GTPase fa	99.95
KOG0070	181	consensus GTP-binding ADP-ribosylation factor Arf1	99.94
cd04155	173	Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf f	99.94
KOG4252	246	consensus GTP-binding protein [Signal transduction	99.94
KOG0073	185	consensus GTP-binding ADP-ribosylation factor-like	99.94
COG1100	219	GTPase SAR1 and related small G proteins [General	99.94
TIGR00231	161	small_GTP small GTP-binding protein domain. This m	99.94
cd01898	170	Obg Obg subfamily. The Obg nucleotide binding prot	99.94
TIGR02528	142	EutP ethanolamine utilization protein, EutP. This	99.94
cd04171	164	SelB SelB subfamily. SelB is an elongation factor	99.93
cd01878	204	HflX HflX subfamily. A distinct conserved domain w	99.93
PRK12299	335	obgE GTPase CgtA; Reviewed	99.93
PRK15494	339	era GTPase Era; Provisional	99.93
cd01887	168	IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryo	99.93
TIGR00436	270	era GTP-binding protein Era. Era is an essential G	99.92
cd00882	157	Ras_like_GTPase Ras-like GTPase superfamily. The R	99.92
KOG3883	198	consensus Ras family small GTPase [Signal transduc	99.92
cd01894	157	EngA1 EngA1 subfamily. This CD represents the firs	99.92
PF08477	119	Miro: Miro-like protein; InterPro: IPR013684 Mitoc	99.92
cd01879	158	FeoB Ferrous iron transport protein B (FeoB) subfa	99.92
PRK04213	201	GTP-binding protein; Provisional	99.92
KOG0075	186	consensus GTP-binding ADP-ribosylation factor-like	99.91
PRK03003	472	GTP-binding protein Der; Reviewed	99.91
TIGR00450	442	mnmE_trmE_thdF tRNA modification GTPase TrmE. TrmE	99.91
KOG0071	180	consensus GTP-binding ADP-ribosylation factor Arf6	99.91
cd01891	194	TypA_BipA TypA (tyrosine phosphorylated protein A)	99.91
TIGR03156	351	GTP_HflX GTP-binding protein HflX. This protein fa	99.91
PRK03003	472	GTP-binding protein Der; Reviewed	99.91
TIGR02729	329	Obg_CgtA Obg family GTPase CgtA. This model descri	99.91
cd04164	157	trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein	99.91
PF02421	156	FeoB_N: Ferrous iron transport protein B; InterPro	99.91
cd01881	176	Obg_like The Obg-like subfamily consists of five w	99.91
PRK05291	449	trmE tRNA modification GTPase TrmE; Reviewed	99.9
TIGR00487	587	IF-2 translation initiation factor IF-2. This mode	99.9
TIGR03594	429	GTPase_EngA ribosome-associated GTPase EngA. EngA	99.9
cd04163	168	Era Era subfamily. Era (E. coli Ras-like protein)	99.9
cd00881	189	GTP_translation_factor GTP translation factor fami	99.9
cd01895	174	EngA2 EngA2 subfamily. This CD represents the seco	99.9
TIGR01393	595	lepA GTP-binding protein LepA. LepA (GUF1 in Sacca	99.9
KOG0076	197	consensus GTP-binding ADP-ribosylation factor-like	99.89
cd01889	192	SelB_euk SelB subfamily. SelB is an elongation fac	99.89
PRK15467	158	ethanolamine utilization protein EutP; Provisional	99.89
KOG1673	205	consensus Ras GTPases [General function prediction	99.89
PRK00089	292	era GTPase Era; Reviewed	99.89
cd04105	203	SR_beta Signal recognition particle receptor, beta	99.89
PRK00454	196	engB GTP-binding protein YsxC; Reviewed	99.89
CHL00189	742	infB translation initiation factor 2; Provisional	99.89
PRK00093	435	GTP-binding protein Der; Reviewed	99.89
TIGR03594	429	GTPase_EngA ribosome-associated GTPase EngA. EngA	99.89
PRK12297	424	obgE GTPase CgtA; Reviewed	99.89
TIGR03598	179	GTPase_YsxC ribosome biogenesis GTP-binding protei	99.88
cd01888	203	eIF2_gamma eIF2-gamma (gamma subunit of initiation	99.88
PF00009	188	GTP_EFTU: Elongation factor Tu GTP binding domain;	99.88
PRK05306	787	infB translation initiation factor IF-2; Validated	99.88
PRK11058	426	GTPase HflX; Provisional	99.88
KOG0096	216	consensus GTPase Ran/TC4/GSP1 (nuclear protein tra	99.87
PRK05433	600	GTP-binding protein LepA; Provisional	99.87
COG1159	298	Era GTPase [General function prediction only]	99.87
PRK12296	500	obgE GTPase CgtA; Reviewed	99.87
TIGR00475	581	selB selenocysteine-specific elongation factor Sel	99.87
TIGR00491	590	aIF-2 translation initiation factor aIF-2/yIF-2. T	99.87
PRK09518	712	bifunctional cytidylate kinase/GTPase Der; Reviewe	99.87
PRK00093	435	GTP-binding protein Der; Reviewed	99.86
PRK09518	712	bifunctional cytidylate kinase/GTPase Der; Reviewe	99.86
PRK12317	425	elongation factor 1-alpha; Reviewed	99.86
COG2229	187	Predicted GTPase [General function prediction only	99.86
PRK12298	390	obgE GTPase CgtA; Reviewed	99.86
cd01896	233	DRG The developmentally regulated GTP-binding prot	99.86
cd00880	163	Era_like Era (E. coli Ras-like protein)-like. This	99.86
TIGR00437	591	feoB ferrous iron transporter FeoB. FeoB (773 amin	99.86
KOG0072	182	consensus GTP-binding ADP-ribosylation factor-like	99.85
PRK09554	772	feoB ferrous iron transport protein B; Reviewed	99.84
TIGR00483	426	EF-1_alpha translation elongation factor EF-1 alph	99.84
PF10662	143	PduV-EutP: Ethanolamine utilisation - propanediol	99.84
COG1160	444	Predicted GTPases [General function prediction onl	99.84
KOG0074	185	consensus GTP-binding ADP-ribosylation factor-like	99.83
KOG4423	229	consensus GTP-binding protein-like, RAS superfamil	99.83
PRK04004	586	translation initiation factor IF-2; Validated	99.82
cd01884	195	EF_Tu EF-Tu subfamily. This subfamily includes ort	99.82
cd01876	170	YihA_EngB The YihA (EngB) subfamily. This subfamil	99.82
cd04166	208	CysN_ATPS CysN_ATPS subfamily. CysN, together with	99.81
TIGR01394	594	TypA_BipA GTP-binding protein TypA/BipA. This bact	99.81
TIGR03680	406	eif2g_arch translation initiation factor 2 subunit	99.81
COG1160	444	Predicted GTPases [General function prediction onl	99.81
PRK10512	614	selenocysteinyl-tRNA-specific translation factor;	99.81
PRK10218	607	GTP-binding protein; Provisional	99.81
KOG1707	625	consensus Predicted Ras related/Rac-GTP binding pr	99.81
cd04165	224	GTPBP1_like GTPBP1-like. Mammalian GTP binding pro	99.81
cd04167	213	Snu114p Snu114p subfamily. Snu114p is one of sever	99.81
PRK04000	411	translation initiation factor IF-2 subunit gamma;	99.8
COG0486	454	ThdF Predicted GTPase [General function prediction	99.8
KOG1423	379	consensus Ras-like GTPase ERA [Cell cycle control,	99.8
cd04168	237	TetM_like Tet(M)-like subfamily. Tet(M), Tet(O), T	99.79
PF04670	232	Gtr1_RagA: Gtr1/RagA G protein conserved region; I	99.79
PRK12736	394	elongation factor Tu; Reviewed	99.78
COG0218	200	Predicted GTPase [General function prediction only	99.78
PRK12735	396	elongation factor Tu; Reviewed	99.78
COG0532	509	InfB Translation initiation factor 2 (IF-2; GTPase	99.77
cd01883	219	EF1_alpha Eukaryotic elongation factor 1 (EF1) alp	99.77
COG0370	653	FeoB Fe2+ transport system protein B [Inorganic io	99.77
TIGR00485	394	EF-Tu translation elongation factor TU. This align	99.77
CHL00071	409	tufA elongation factor Tu	99.75
cd04104	197	p47_IIGP_like p47 (47-kDa) family. The p47 GTPase	99.75
cd04169	267	RF3 RF3 subfamily. Peptide chain release factor 3	99.74
KOG1489	366	consensus Predicted GTP-binding protein (ODN super	99.72
PRK00049	396	elongation factor Tu; Reviewed	99.72
cd01886	270	EF-G Elongation factor G (EF-G) subfamily. Translo	99.72
cd01885	222	EF2 EF2 (for archaea and eukarya). Translocation r	99.72
PRK05124	474	cysN sulfate adenylyltransferase subunit 1; Provis	99.71
PLN00043	447	elongation factor 1-alpha; Provisional	99.71
PLN03126	478	Elongation factor Tu; Provisional	99.71
TIGR02034	406	CysN sulfate adenylyltransferase, large subunit. H	99.71
COG1084	346	Predicted GTPase [General function prediction only	99.71
PLN03127	447	Elongation factor Tu; Provisional	99.71
PF09439	181	SRPRB: Signal recognition particle receptor beta s	99.7
cd01850	276	CDC_Septin CDC/Septin. Septins are a conserved fam	99.7
COG3596	296	Predicted GTPase [General function prediction only	99.7
PRK13351	687	elongation factor G; Reviewed	99.7
PTZ00141	446	elongation factor 1- alpha; Provisional	99.7
PRK00741	526	prfC peptide chain release factor 3; Provisional	99.69
cd04170	268	EF-G_bact Elongation factor G (EF-G) subfamily. Tr	99.69
KOG1145	683	consensus Mitochondrial translation initiation fac	99.68
KOG0462	650	consensus Elongation factor-type GTP-binding prote	99.68
COG2262	411	HflX GTPases [General function prediction only]	99.68
COG1163	365	DRG Predicted GTPase [General function prediction	99.67
PRK05506	632	bifunctional sulfate adenylyltransferase subunit 1	99.67
cd01852	196	AIG1 AIG1 (avrRpt2-induced gene 1). This represent	99.67
PF01926	116	MMR_HSR1: 50S ribosome-binding GTPase; InterPro: I	99.66
PTZ00327	460	eukaryotic translation initiation factor 2 gamma s	99.66
cd01899	318	Ygr210 Ygr210 subfamily. Ygr210 is a member of Obg	99.65
TIGR00484	689	EF-G translation elongation factor EF-G. After pep	99.64
COG5256	428	TEF1 Translation elongation factor EF-1alpha (GTPa	99.64
KOG0077	193	consensus Vesicle coat complex COPII, GTPase subun	99.63
TIGR00503	527	prfC peptide chain release factor 3. This translat	99.62
COG4917	148	EutP Ethanolamine utilization protein [Amino acid	99.61
COG0536	369	Obg Predicted GTPase [General function prediction	99.61
PRK12739	691	elongation factor G; Reviewed	99.61
PRK09866	741	hypothetical protein; Provisional	99.61
PRK14845	1049	translation initiation factor IF-2; Provisional	99.6
KOG0090	238	consensus Signal recognition particle receptor, be	99.59
cd00066	317	G-alpha G protein alpha subunit. The alpha subunit	99.59
KOG1191	531	consensus Mitochondrial GTPase [Translation, ribos	99.57
KOG1144	1064	consensus Translation initiation factor 5B (eIF-5B	99.57
COG0481	603	LepA Membrane GTPase LepA [Cell envelope biogenesi	99.55
KOG1707	625	consensus Predicted Ras related/Rac-GTP binding pr	99.55
PRK12740	668	elongation factor G; Reviewed	99.54
KOG3905	473	consensus Dynein light intermediate chain [Cell mo	99.54
PRK00007	693	elongation factor G; Reviewed	99.54
KOG0461	522	consensus Selenocysteine-specific elongation facto	99.53
KOG1490	620	consensus GTP-binding protein CRFG/NOG1 (ODN super	99.53
COG2895	431	CysN GTPases - Sulfate adenylate transferase subun	99.52
smart00010	124	small_GTPase Small GTPase of the Ras superfamily;	99.51
PRK09602	396	translation-associated GTPase; Reviewed	99.51
KOG1532	366	consensus GTPase XAB1, interacts with DNA repair p	99.5
smart00275	342	G_alpha G protein alpha subunit. Subunit of G prot	99.5
TIGR00991	313	3a0901s02IAP34 GTP-binding protein (Chloroplast En	99.5
cd01853	249	Toc34_like Toc34-like (Translocon at the Outer-env	99.49
PF04548	212	AIG1: AIG1 family; InterPro: IPR006703 This entry	99.49
TIGR00157	245	ribosome small subunit-dependent GTPase A. The Aqu	99.49
TIGR00490	720	aEF-2 translation elongation factor aEF-2. This mo	99.49
PRK13768	253	GTPase; Provisional	99.49
PF05783	472	DLIC: Dynein light intermediate chain (DLIC); Inte	99.47
PF03029	238	ATP_bind_1: Conserved hypothetical ATP binding pro	99.44
TIGR00101	199	ureG urease accessory protein UreG. This model rep	99.43
KOG3886	295	consensus GTP-binding protein [Signal transduction	99.42
cd01882	225	BMS1 Bms1. Bms1 is an essential, evolutionarily co	99.42
PF05049	376	IIGP: Interferon-inducible GTPase (IIGP); InterPro	99.4
TIGR02836	492	spore_IV_A stage IV sporulation protein A. A compa	99.38
PRK09435	332	membrane ATPase/protein kinase; Provisional	99.38
PLN00116	843	translation elongation factor EF-2 subunit; Provis	99.37
PTZ00416	836	elongation factor 2; Provisional	99.37
TIGR00073	207	hypB hydrogenase accessory protein HypB. HypB is i	99.36
KOG0082	354	consensus G-protein alpha subunit (small G protein	99.33
PF00735	281	Septin: Septin; InterPro: IPR000038 Septins consti	99.32
KOG0705	749	consensus GTPase-activating protein Centaurin gamm	99.32
PTZ00258	390	GTP-binding protein; Provisional	99.31
KOG0458	603	consensus Elongation factor 1 alpha [Translation,	99.29
PF00350	168	Dynamin_N: Dynamin family; InterPro: IPR001401 Mem	99.28
KOG3887	347	consensus Predicted small GTPase involved in nucle	99.27
COG1217	603	TypA Predicted membrane GTPase involved in stress	99.27
PRK07560	731	elongation factor EF-2; Reviewed	99.26
COG5257	415	GCD11 Translation initiation factor 2, gamma subun	99.21
COG3276	447	SelB Selenocysteine-specific translation elongatio	99.2
PRK09601	364	GTP-binding protein YchF; Reviewed	99.18
KOG1486	364	consensus GTP-binding protein DRG2 (ODN superfamil	99.18
COG0378	202	HypB Ni2+-binding GTPase involved in regulation of	99.16
COG0050	394	TufB GTPases - translation elongation factors [Tra	99.16
TIGR00750	300	lao LAO/AO transport system ATPase. Mutations have	99.16
PF00503	389	G-alpha: G-protein alpha subunit; InterPro: IPR001	99.14
smart00053	240	DYNc Dynamin, GTPase. Large GTPases that mediate v	99.13
COG4108	528	PrfC Peptide chain release factor RF-3 [Translatio	99.11
COG0480	697	FusA Translation elongation factors (GTPases) [Tra	99.1
TIGR00993	763	3a0901s04IAP86 chloroplast protein import componen	99.1
cd01855	190	YqeH YqeH. YqeH is an essential GTP-binding protei	99.09
KOG0468	971	consensus U5 snRNP-specific protein [Translation,	99.08
cd01859	156	MJ1464 MJ1464. This family represents archaeal GTP	99.06
PRK10463	290	hydrogenase nickel incorporation protein HypB; Pro	99.05
PRK00098	298	GTPase RsgA; Reviewed	99.05
cd01854	287	YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtil	99.0
COG5019	373	CDC3 Septin family protein [Cell division and chro	98.99
KOG1143	591	consensus Predicted translation elongation factor	98.97
PRK12289	352	GTPase RsgA; Reviewed	98.97
KOG2486	320	consensus Predicted GTPase [General function predi	98.96
KOG1547	336	consensus Septin CDC10 and related P-loop GTPases	98.94
KOG2655	366	consensus Septin family protein (P-loop GTPase) [C	98.94
TIGR03597	360	GTPase_YqeH ribosome biogenesis GTPase YqeH. This	98.92
PRK12288	347	GTPase RsgA; Reviewed	98.9
cd01857	141	HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to t	98.88
PF03308	266	ArgK: ArgK protein; InterPro: IPR005129 Bacterial	98.86
cd01900	274	YchF YchF subfamily. YchF is a member of the Obg f	98.85
COG1703	323	ArgK Putative periplasmic protein kinase ArgK and	98.85
COG5258	527	GTPBP1 GTPase [General function prediction only]	98.84
COG0012	372	Predicted GTPase, probable translation factor [Tra	98.84
KOG0460	449	consensus Mitochondrial translation elongation fac	98.83
cd01858	157	NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protei	98.81
cd01858	157	NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protei	98.76
KOG0410	410	consensus Predicted GTP binding protein [General f	98.75
cd04178	172	Nucleostemin_like Nucleostemin-like. Nucleostemin	98.74
KOG0463	641	consensus GTP-binding protein GP-1 [General functi	98.7
KOG1487	358	consensus GTP-binding protein DRG1 (ODN superfamil	98.7
cd01856	171	YlqF YlqF. Proteins of the YlqF family contain all	98.69
cd01856	171	YlqF YlqF. Proteins of the YlqF family contain all	98.68
KOG1954	532	consensus Endocytosis/signaling protein EHD1 [Sign	98.68
PF09547	492	Spore_IV_A: Stage IV sporulation protein A (spore_	98.68
cd01849	155	YlqF_related_GTPase YlqF-related GTPases. These pr	98.66
cd01859	156	MJ1464 MJ1464. This family represents archaeal GTP	98.66
cd01857	141	HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to t	98.64
TIGR03596	276	GTPase_YlqF ribosome biogenesis GTP-binding protei	98.63
PF03193	161	DUF258: Protein of unknown function, DUF258; Inter	98.61
COG5192	1077	BMS1 GTP-binding protein required for 40S ribosome	98.6
PRK09563	287	rbgA GTPase YlqF; Reviewed	98.58
TIGR03596	276	GTPase_YlqF ribosome biogenesis GTP-binding protei	98.55
cd01855	190	YqeH YqeH. YqeH is an essential GTP-binding protei	98.53
cd01849	155	YlqF_related_GTPase YlqF-related GTPases. These pr	98.51
PRK12288	347	GTPase RsgA; Reviewed	98.5
PRK13796	365	GTPase YqeH; Provisional	98.5
KOG0448	749	consensus Mitofusin 1 GTPase, involved in mitochon	98.49
KOG0085	359	consensus G protein subunit Galphaq/Galphay, small	98.49
TIGR00092	368	GTP-binding protein YchF. This predicted GTP-bindi	98.47
COG1161	322	Predicted GTPases [General function prediction onl	98.44
PRK09563	287	rbgA GTPase YlqF; Reviewed	98.42
cd01851	224	GBP Guanylate-binding protein (GBP), N-terminal do	98.42
TIGR03348	1169	VI_IcmF type VI secretion protein IcmF. Members of	98.41
KOG0467	887	consensus Translation elongation factor 2/ribosome	98.39
PRK01889	356	GTPase RsgA; Reviewed	98.36
KOG0466	466	consensus Translation initiation factor 2, gamma s	98.35
KOG0099	379	consensus G protein subunit Galphas, small G prote	98.35
cd03112	158	CobW_like The function of this protein family is u	98.33
KOG3859	406	consensus Septins (P-loop GTPases) [Cell cycle con	98.31
PRK12289	352	GTPase RsgA; Reviewed	98.31
TIGR00157	245	ribosome small subunit-dependent GTPase A. The Aqu	98.31
COG1162	301	Predicted GTPases [General function prediction onl	98.3
cd01854	287	YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtil	98.29
TIGR03597	360	GTPase_YqeH ribosome biogenesis GTPase YqeH. This	98.27
PF11111	176	CENP-M: Centromere protein M (CENP-M); InterPro: I	98.26
KOG4273	418	consensus Uncharacterized conserved protein [Funct	98.23
COG1618	179	Predicted nucleotide kinase [Nucleotide transport	98.23
PRK10416	318	signal recognition particle-docking protein FtsY;	98.21
KOG0447	980	consensus Dynamin-like GTP binding protein [Genera	98.2
PRK00098	298	GTPase RsgA; Reviewed	98.17
KOG1491	391	consensus Predicted GTP-binding protein (ODN super	98.15
TIGR00064	272	ftsY signal recognition particle-docking protein F	98.13
KOG1534	273	consensus Putative transcription factor FET5 [Tran	98.13
PRK13796	365	GTPase YqeH; Provisional	98.13
PRK14974	336	cell division protein FtsY; Provisional	98.08
PF06858	58	NOG1: Nucleolar GTP-binding protein 1 (NOG1); Inte	98.04
COG1162	301	Predicted GTPases [General function prediction onl	98.02
PF03266	168	NTPase_1: NTPase; InterPro: IPR004948 This entry r	97.96
KOG0469	842	consensus Elongation factor 2 [Translation, riboso	97.93
KOG0464	753	consensus Elongation factor G [Translation, riboso	97.93
PRK13695	174	putative NTPase; Provisional	97.92
KOG0459	501	consensus Polypeptide release factor 3 [Translatio	97.91
KOG2485	335	consensus Conserved ATP/GTP binding protein [Gener	97.9
TIGR01425	429	SRP54_euk signal recognition particle protein SRP5	97.9
KOG1533	290	consensus Predicted GTPase [General function predi	97.82
COG3523	1188	IcmF Type VI protein secretion system component Va	97.79
KOG0465	721	consensus Mitochondrial elongation factor [Transla	97.74
cd02038	139	FleN-like FleN is a member of the Fer4_NifH superf	97.7
KOG1424	562	consensus Predicted GTP-binding protein MMR1 [Gene	97.68
PRK11537	318	putative GTP-binding protein YjiA; Provisional	97.65
COG0523	323	Putative GTPases (G3E family) [General function pr	97.65
TIGR00235	207	udk uridine kinase. Model contains a number of lon	97.63
PRK08118	167	topology modulation protein; Reviewed	97.63
PF13207	121	AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6	97.62
COG0563	178	Adk Adenylate kinase and related kinases [Nucleoti	97.61
PRK07261	171	topology modulation protein; Provisional	97.58
PF13555	62	AAA_29: P-loop containing region of AAA domain	97.58
PRK10751	173	molybdopterin-guanine dinucleotide biosynthesis pr	97.57
PRK10867	433	signal recognition particle protein; Provisional	97.56
PRK14737	186	gmk guanylate kinase; Provisional	97.56
KOG2484	435	consensus GTPase [General function prediction only	97.53
cd00009	151	AAA The AAA+ (ATPases Associated with a wide varie	97.51
PRK14738	206	gmk guanylate kinase; Provisional	97.5
PRK12727	559	flagellar biosynthesis regulator FlhF; Provisional	97.5
PF13671	143	AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1	97.48
PRK00771	437	signal recognition particle protein Srp54; Provisi	97.48
COG0194	191	Gmk Guanylate kinase [Nucleotide transport and met	97.47
COG1126	240	GlnQ ABC-type polar amino acid transport system, A	97.45
COG1419	407	FlhF Flagellar GTP-binding protein [Cell motility	97.44
COG1136	226	SalX ABC-type antimicrobial peptide transport syst	97.43
cd02019	69	NK Nucleoside/nucleotide kinase (NK) is a protein	97.42
COG1116	248	TauB ABC-type nitrate/sulfonate/bicarbonate transp	97.4
PRK05480	209	uridine/cytidine kinase; Provisional	97.4
cd01983	99	Fer4_NifH The Fer4_NifH superfamily contains a var	97.4
PF13521	163	AAA_28: AAA domain; PDB: 1LW7_A.	97.38
PF04665	241	Pox_A32: Poxvirus A32 protein; InterPro: IPR006758	97.38
KOG3929	363	consensus Uncharacterized conserved protein [Funct	97.35
cd02042	104	ParA ParA and ParB of Caulobacter crescentus belon	97.34
PRK06217	183	hypothetical protein; Validated	97.33
cd04178	172	Nucleostemin_like Nucleostemin-like. Nucleostemin	97.32
PRK01889	356	GTPase RsgA; Reviewed	97.32
PRK14530	215	adenylate kinase; Provisional	97.3
KOG2423	572	consensus Nucleolar GTPase [General function predi	97.28
cd00820	107	PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPC	97.27
PF00005	137	ABC_tran: ABC transporter This structure is on hol	97.26
cd00071	137	GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.	97.26
PF03205	140	MobB: Molybdopterin guanine dinucleotide synthesis	97.24
PF13238	129	AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB	97.24
PTZ00088	229	adenylate kinase 1; Provisional	97.23
PRK14527	191	adenylate kinase; Provisional	97.22
PRK03839	180	putative kinase; Provisional	97.22
smart00382	148	AAA ATPases associated with a variety of cellular	97.21
COG3638	258	ABC-type phosphate/phosphonate transport system, A	97.21
PRK10078	186	ribose 1,5-bisphosphokinase; Provisional	97.21
COG1117	253	PstB ABC-type phosphate transport system, ATPase c	97.2
PRK14723	767	flhF flagellar biosynthesis regulator FlhF; Provis	97.17
TIGR02322	179	phosphon_PhnN phosphonate metabolism protein/1,5-b	97.16
PF00004	132	AAA: ATPase family associated with various cellula	97.14
cd03238	176	ABC_UvrA The excision repair protein UvrA; Nucleot	97.13
TIGR03263	180	guanyl_kin guanylate kinase. Members of this famil	97.12
PRK14532	188	adenylate kinase; Provisional	97.09
KOG0780	483	consensus Signal recognition particle, subunit Srp	97.08
cd03110	179	Fer4_NifH_child This protein family's function is	97.08
COG3840	231	ThiQ ABC-type thiamine transport system, ATPase co	97.07
TIGR01360	188	aden_kin_iso1 adenylate kinase, isozyme 1 subfamil	97.07
cd01130	186	VirB11-like_ATPase Type IV secretory pathway compo	97.06
PF07728	139	AAA_5: AAA domain (dynein-related subfamily); Inte	97.05
PF02367	123	UPF0079: Uncharacterised P-loop hydrolase UPF0079;	97.05
cd01131	198	PilT Pilus retraction ATPase PilT. PilT is a nucle	97.05
cd02023	198	UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.	97.04
PRK08233	182	hypothetical protein; Provisional	97.04
PRK06547	172	hypothetical protein; Provisional	97.04
PRK13949	169	shikimate kinase; Provisional	97.04
COG4962	355	CpaF Flp pilus assembly protein, ATPase CpaF [Intr	97.03
cd03111	106	CpaE_like This protein family consists of proteins	97.0
PRK00300	205	gmk guanylate kinase; Provisional	96.99
PRK00625	173	shikimate kinase; Provisional	96.99
PLN02674	244	adenylate kinase	96.98
PRK02496	184	adk adenylate kinase; Provisional	96.97
PRK13851	344	type IV secretion system protein VirB11; Provision	96.96
cd01428	194	ADK Adenylate kinase (ADK) catalyzes the reversibl	96.96
COG3839	338	MalK ABC-type sugar transport systems, ATPase comp	96.96
PLN02200	234	adenylate kinase family protein	96.96
TIGR00150	133	HI0065_YjeE ATPase, YjeE family. Members of this f	96.95
PRK14531	183	adenylate kinase; Provisional	96.95
PF13191	185	AAA_16: AAA ATPase domain; PDB: 2V1U_A.	96.95
PRK05057	172	aroK shikimate kinase I; Reviewed	96.95
PHA00729	226	NTP-binding motif containing protein	96.94
cd02025	220	PanK Pantothenate kinase (PanK) catalyzes the phos	96.93
cd03222	177	ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibi	96.92
PF01580	205	FtsK_SpoIIIE: FtsK/SpoIIIE family; InterPro: IPR00	96.92
PRK09270	229	nucleoside triphosphate hydrolase domain-containin	96.91
TIGR01359	183	UMP_CMP_kin_fam UMP-CMP kinase family. This subfam	96.91
PF13401	131	AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S	96.9
COG1120	258	FepC ABC-type cobalamin/Fe3+-siderophores transpor	96.9
PRK05416	288	glmZ(sRNA)-inactivating NTPase; Provisional	96.9
cd03255	218	ABC_MJ0796_Lo1CDE_FtsE This family is comprised of	96.89
COG4525	259	TauB ABC-type taurine transport system, ATPase com	96.89
PRK13900	332	type IV secretion system ATPase VirB11; Provisiona	96.89
TIGR01351	210	adk adenylate kinases. Adenylate kinase (EC 2.7.4.	96.89
TIGR00960	216	3a0501s02 Type II (General) Secretory Pathway (IIS	96.89
PRK04195	482	replication factor C large subunit; Provisional	96.89
KOG3347	176	consensus Predicted nucleotide kinase/nuclear prot	96.89
cd03225	211	ABC_cobalt_CbiO_domain1 Domain I of the ABC compon	96.88

>KOG0092 consensus GTPase Rab5/YPT51 and related small G protein superfamily GTPases [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=3.6e-42  Score=230.62  Aligned_cols=169  Identities=32%  Similarity=0.606  Sum_probs=156.7

Q ss_pred             CceeEEEEEcCCCCCHHHHHHHHhhCCCCCCCCCcee-eeeeEEEEECCeEEEEEEEeCCCccccccccccCcCCCcEEE
Q 036449            4 SRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVF-DNFSANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFI   82 (197)
Q Consensus         4 ~~~~~i~v~G~~~~GKstli~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i   82 (197)
                      ...+||+++|..+||||||+.|+..+.|.+...+|++ ..+...+.+++..+.+.||||+|+++|.++.++|+++++++|
T Consensus         3 ~~~~KvvLLG~~~VGKSSlV~Rfvk~~F~e~~e~TIGaaF~tktv~~~~~~ikfeIWDTAGQERy~slapMYyRgA~AAi   82 (200)
T KOG0092|consen    3 TREFKVVLLGDSGVGKSSLVLRFVKDQFHENIEPTIGAAFLTKTVTVDDNTIKFEIWDTAGQERYHSLAPMYYRGANAAI   82 (200)
T ss_pred             cceEEEEEECCCCCCchhhhhhhhhCccccccccccccEEEEEEEEeCCcEEEEEEEEcCCcccccccccceecCCcEEE
Confidence            5679999999999999999999999999998899996 455778888888999999999999999999999999999999


Q ss_pred             EEEeCCCchhHHHHHHHHHHHHhhhC-CCCCEEEEeeCCcccCCcccccCCCCCCcccHHHHHHHHHHhCCCceEEeccC
Q 036449           83 LAFSLISKASYENVSKKWIPELKHYA-PGVPIILVGTKLDLRDDKQFFIDHPGAVPISTAQGEELRKLIGAPAYIECSSK  161 (197)
Q Consensus        83 ~v~d~~~~~s~~~~~~~~~~~i~~~~-~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~  161 (197)
                      +|||+++.+||..+ +.|+..++... |++.+.+||||+|+.+.+.          +..++++.+++..+. .|+|+||+
T Consensus        83 vvYDit~~~SF~~a-K~WvkeL~~~~~~~~vialvGNK~DL~~~R~----------V~~~ea~~yAe~~gl-l~~ETSAK  150 (200)
T KOG0092|consen   83 VVYDITDEESFEKA-KNWVKELQRQASPNIVIALVGNKADLLERRE----------VEFEEAQAYAESQGL-LFFETSAK  150 (200)
T ss_pred             EEEecccHHHHHHH-HHHHHHHHhhCCCCeEEEEecchhhhhhccc----------ccHHHHHHHHHhcCC-EEEEEecc
Confidence            99999999999999 89999999998 6888899999999988665          899999999999998 89999999


Q ss_pred             CCCCHHHHHHHHHHHHcCCCchh
Q 036449          162 TQQNVKAVFDAAIRVVLQPPKTK  184 (197)
Q Consensus       162 ~~~~i~~l~~~i~~~~~~~~~~~  184 (197)
                      ++.|++++|..|.+.+.......
T Consensus       151 Tg~Nv~~if~~Ia~~lp~~~~~~  173 (200)
T KOG0092|consen  151 TGENVNEIFQAIAEKLPCSDPQE  173 (200)
T ss_pred             cccCHHHHHHHHHHhccCccccc
Confidence            99999999999999998875543

>KOG0084 consensus GTPase Rab1/YPT1, small G protein superfamily, and related GTP-binding proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=1.6e-41  Score=228.38  Aligned_cols=167  Identities=36%  Similarity=0.698  Sum_probs=155.5

Q ss_pred             CceeEEEEEcCCCCCHHHHHHHHhhCCCCCCCCCceeeee-eEEEEECCeEEEEEEEeCCCccccccccccCcCCCcEEE
Q 036449            4 SRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNF-SANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFI   82 (197)
Q Consensus         4 ~~~~~i~v~G~~~~GKstli~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i   82 (197)
                      ..-+||+++|.+|||||+|+.||..+.|.+.+..|++..+ ...+.++++.+.+++|||+||++|++....+++++|++|
T Consensus         7 dylFKiiliGds~VGKtCL~~Rf~~~~f~e~~~sTIGVDf~~rt~e~~gk~iKlQIWDTAGQERFrtit~syYR~ahGii   86 (205)
T KOG0084|consen    7 DYLFKIILIGDSGVGKTCLLLRFKDDTFTESYISTIGVDFKIRTVELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGII   86 (205)
T ss_pred             ceEEEEEEECCCCcChhhhhhhhccCCcchhhcceeeeEEEEEEeeecceEEEEEeeeccccHHHhhhhHhhccCCCeEE
Confidence            4569999999999999999999999999999999997655 577889999999999999999999999999999999999


Q ss_pred             EEEeCCCchhHHHHHHHHHHHHhhhC-CCCCEEEEeeCCcccCCcccccCCCCCCcccHHHHHHHHHHhCCCceEEeccC
Q 036449           83 LAFSLISKASYENVSKKWIPELKHYA-PGVPIILVGTKLDLRDDKQFFIDHPGAVPISTAQGEELRKLIGAPAYIECSSK  161 (197)
Q Consensus        83 ~v~d~~~~~s~~~~~~~~~~~i~~~~-~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~  161 (197)
                      +|||+++.+||..+ ..|+..+.... ++.|.++||||+|+.+.+.          ++.++++.|+..++.+.|+|+||+
T Consensus        87 ~vyDiT~~~SF~~v-~~Wi~Ei~~~~~~~v~~lLVGNK~Dl~~~~~----------v~~~~a~~fa~~~~~~~f~ETSAK  155 (205)
T KOG0084|consen   87 FVYDITKQESFNNV-KRWIQEIDRYASENVPKLLVGNKCDLTEKRV----------VSTEEAQEFADELGIPIFLETSAK  155 (205)
T ss_pred             EEEEcccHHHhhhH-HHHHHHhhhhccCCCCeEEEeeccccHhhee----------cCHHHHHHHHHhcCCcceeecccC
Confidence            99999999999999 89999999998 6889999999999988776          899999999999999449999999


Q ss_pred             CCCCHHHHHHHHHHHHcCCC
Q 036449          162 TQQNVKAVFDAAIRVVLQPP  181 (197)
Q Consensus       162 ~~~~i~~l~~~i~~~~~~~~  181 (197)
                      ++.|+++.|..|...+..+.
T Consensus       156 ~~~NVe~~F~~la~~lk~~~  175 (205)
T KOG0084|consen  156 DSTNVEDAFLTLAKELKQRK  175 (205)
T ss_pred             CccCHHHHHHHHHHHHHHhc
Confidence            99999999999999887654

>cd01875 RhoG RhoG subfamily

Probab=100.00  E-value=2.6e-40  Score=232.90  Aligned_cols=188  Identities=57%  Similarity=0.985  Sum_probs=157.2

Q ss_pred             ceeEEEEEcCCCCCHHHHHHHHhhCCCCCCCCCceeeeeeEEEEECCeEEEEEEEeCCCccccccccccCcCCCcEEEEE
Q 036449            5 RFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILA   84 (197)
Q Consensus         5 ~~~~i~v~G~~~~GKstli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v   84 (197)
                      ..+||+++|..|||||||+.++..+.|...+.||.+..+...+.+++..+.+++|||+|+++|+.++..+++++|++|+|
T Consensus         2 ~~~ki~~vG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~e~~~~l~~~~~~~a~~~ilv   81 (191)
T cd01875           2 QSIKCVVVGDGAVGKTCLLICYTTNAFPKEYIPTVFDNYSAQTAVDGRTVSLNLWDTAGQEEYDRLRTLSYPQTNVFIIC   81 (191)
T ss_pred             CcEEEEEECCCCCCHHHHHHHHHhCCCCcCCCCceEeeeEEEEEECCEEEEEEEEECCCchhhhhhhhhhccCCCEEEEE
Confidence            45899999999999999999999999999999999877776677888899999999999999999999999999999999


Q ss_pred             EeCCCchhHHHHHHHHHHHHhhhCCCCCEEEEeeCCcccCCcccc--cCCCCCCcccHHHHHHHHHHhCCCceEEeccCC
Q 036449           85 FSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLRDDKQFF--IDHPGAVPISTAQGEELRKLIGAPAYIECSSKT  162 (197)
Q Consensus        85 ~d~~~~~s~~~~~~~~~~~i~~~~~~~~~ivv~nK~D~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~  162 (197)
                      ||++++.+|+.+...|...+....+++|+++||||.|+.+.....  ........+..++++.+++..+..+|+++||++
T Consensus        82 ydit~~~Sf~~~~~~w~~~i~~~~~~~piilvgNK~DL~~~~~~~~~~~~~~~~~v~~~~~~~~a~~~~~~~~~e~SAk~  161 (191)
T cd01875          82 FSIASPSSYENVRHKWHPEVCHHCPNVPILLVGTKKDLRNDADTLKKLKEQGQAPITPQQGGALAKQIHAVKYLECSALN  161 (191)
T ss_pred             EECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEEeChhhhcChhhHHHHhhccCCCCCHHHHHHHHHHcCCcEEEEeCCCC
Confidence            999999999999557888887766889999999999996542100  001112346778899999999855899999999


Q ss_pred             CCCHHHHHHHHHHHHcCCCchhhhhhccccccccC
Q 036449          163 QQNVKAVFDAAIRVVLQPPKTKKKKNKAQKACSIL  197 (197)
Q Consensus       163 ~~~i~~l~~~i~~~~~~~~~~~~~~~~~~~~c~~~  197 (197)
                      |.|++++|.++++.+..+...+     ++.+|.+|
T Consensus       162 g~~v~e~f~~l~~~~~~~~~~~-----~~~~c~~~  191 (191)
T cd01875         162 QDGVKEVFAEAVRAVLNPTPIK-----DTKSCVLL  191 (191)
T ss_pred             CCCHHHHHHHHHHHHhcccccc-----CCCCceeC
Confidence            9999999999999987754211     22259876

RhoG is a GTPase with high sequence similarity to members of the Rac subfamily, including the regions involved in effector recognition and binding. However, RhoG does not bind to known Rac1 and Cdc42 effectors, including proteins containing a Cdc42/Rac interacting binding (CRIB) motif. Instead, RhoG interacts directly with Elmo, an upstream regulator of Rac1, in a GTP-dependent manner and forms a ternary complex with Dock180 to induce activation of Rac1. The RhoG-Elmo-Dock180 pathway is required for activation of Rac1 and cell spreading mediated by integrin, as well as for neurite outgrowth induced by nerve growth factor. Thus RhoG activates Rac1 through Elmo and Dock180 to control cell morphology. RhoG has also been shown to play a role in caveolar trafficking and has a novel role in signaling the neutrophil respiratory burst stimulated by G protein-coupled receptor (GPCR) agonists. Most Rho proteins contain a lipid modification site at the C-termin

>cd04133 Rop_like Rop subfamily

Probab=100.00  E-value=6.5e-40  Score=227.19  Aligned_cols=174  Identities=87%  Similarity=1.380  Sum_probs=152.9

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhhCCCCCCCCCceeeeeeEEEEECCeEEEEEEEeCCCccccccccccCcCCCcEEEEEEe
Q 036449            7 IKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFS   86 (197)
Q Consensus         7 ~~i~v~G~~~~GKstli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d   86 (197)
                      +||+++|.+|+|||||+.++..+.|..++.+|.+..+...+.+++..+.+++|||+|+++|..++..++++++++|+|||
T Consensus         2 ~kivv~G~~~vGKTsli~~~~~~~f~~~~~~Ti~~~~~~~~~~~~~~v~l~i~Dt~G~~~~~~~~~~~~~~a~~~ilvyd   81 (176)
T cd04133           2 IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVSVDGNTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFS   81 (176)
T ss_pred             eEEEEECCCCCcHHHHHHHHhcCCCCCCCCCcceeeeEEEEEECCEEEEEEEEECCCCccccccchhhcCCCcEEEEEEE
Confidence            79999999999999999999999999999999987777777788889999999999999999999999999999999999


Q ss_pred             CCCchhHHHHHHHHHHHHhhhCCCCCEEEEeeCCcccCCcccccCCCCCCcccHHHHHHHHHHhCCCceEEeccCCCCCH
Q 036449           87 LISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQQNV  166 (197)
Q Consensus        87 ~~~~~s~~~~~~~~~~~i~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i  166 (197)
                      ++++++|+.+...|+..+....++.|+++||||+|+.+.+......+..+.++.++++.+++..+..+|+||||++|.||
T Consensus        82 ~~~~~Sf~~~~~~w~~~i~~~~~~~piilvgnK~Dl~~~~~~~~~~~~~~~v~~~~~~~~a~~~~~~~~~E~SAk~~~nV  161 (176)
T cd04133          82 LISRASYENVLKKWVPELRHYAPNVPIVLVGTKLDLRDDKQYLADHPGASPITTAQGEELRKQIGAAAYIECSSKTQQNV  161 (176)
T ss_pred             cCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEeChhhccChhhhhhccCCCCCCHHHHHHHHHHcCCCEEEECCCCcccCH
Confidence            99999999985689999887778899999999999966432112233345578899999999998756999999999999


Q ss_pred             HHHHHHHHHHHcCC
Q 036449          167 KAVFDAAIRVVLQP  180 (197)
Q Consensus       167 ~~l~~~i~~~~~~~  180 (197)
                      +++|+.+++.+.+.
T Consensus       162 ~~~F~~~~~~~~~~  175 (176)
T cd04133         162 KAVFDAAIKVVLQP  175 (176)
T ss_pred             HHHHHHHHHHHhcC
Confidence            99999999987554

The Rop (Rho-related protein from plants) subfamily plays a role in diverse cellular processes, including cytoskeletal organization, pollen and vegetative cell growth, hormone responses, stress responses, and pathogen resistance. Rops are able to regulate several downstream pathways to amplify a specific signal by acting as master switches early in the signaling cascade. They transmit a variety of extracellular and intracellular signals. Rops are involved in establishing cell polarity in root-hair development, root-hair elongation, pollen-tube growth, cell-shape formation, responses to hormones such as abscisic acid (ABA) and auxin, responses to abiotic stresses such as oxygen deprivation, and disease resistance and disease susceptibility. An individual Rop can have a unique function or an overlapping function shared with other Rop proteins; in addition, a given Rop-regulated function can be controlled by one or multiple Rop proteins. For example,

>cd04174 Rnd1_Rho6 Rnd1/Rho6 subfamily

Probab=100.00  E-value=1.7e-39  Score=233.00  Aligned_cols=176  Identities=36%  Similarity=0.667  Sum_probs=152.2

Q ss_pred             ceeEEEEEcCCCCCHHHHHHHHhhCCCCCCCCCceeeeeeEEEEECCeEEEEEEEeCCCccccccccccCcCCCcEEEEE
Q 036449            5 RFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILA   84 (197)
Q Consensus         5 ~~~~i~v~G~~~~GKstli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v   84 (197)
                      ..+||+++|.+|||||||+.+|..+.|...+.||.+..+...+.+++..+.+++|||+|++.|..+++.++.++|++|+|
T Consensus        12 ~~~KIvvvGd~~VGKTsLi~r~~~~~F~~~y~pTi~~~~~~~i~~~~~~v~l~iwDTaG~e~~~~~~~~~~~~ad~vIlV   91 (232)
T cd04174          12 MRCKLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENYTAGLETEEQRVELSLWDTSGSPYYDNVRPLCYSDSDAVLLC   91 (232)
T ss_pred             eeEEEEEECCCCCcHHHHHHHHhcCCCCCCcCCceeeeeEEEEEECCEEEEEEEEeCCCchhhHHHHHHHcCCCcEEEEE
Confidence            45899999999999999999999999999999999877877788899999999999999999999999999999999999


Q ss_pred             EeCCCchhHHHHHHHHHHHHhhhCCCCCEEEEeeCCcccCCccccc--CCCCCCcccHHHHHHHHHHhCCCceEEeccCC
Q 036449           85 FSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLRDDKQFFI--DHPGAVPISTAQGEELRKLIGAPAYIECSSKT  162 (197)
Q Consensus        85 ~d~~~~~s~~~~~~~~~~~i~~~~~~~~~ivv~nK~D~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~  162 (197)
                      ||++++++|+.+...|+..+....++.|+++||||+|+........  .....+.++.++++++++..++..|++|||++
T Consensus        92 yDit~~~Sf~~~~~~w~~~i~~~~~~~piilVgNK~DL~~~~~~~~~l~~~~~~~Vs~~e~~~~a~~~~~~~~~EtSAkt  171 (232)
T cd04174          92 FDISRPETVDSALKKWKAEIMDYCPSTRILLIGCKTDLRTDLSTLMELSNQKQAPISYEQGCALAKQLGAEVYLECSAFT  171 (232)
T ss_pred             EECCChHHHHHHHHHHHHHHHHhCCCCCEEEEEECcccccccchhhhhccccCCcCCHHHHHHHHHHcCCCEEEEccCCc
Confidence            9999999999865789999988778899999999999864211000  00112457889999999999985699999999


Q ss_pred             CC-CHHHHHHHHHHHHcCC
Q 036449          163 QQ-NVKAVFDAAIRVVLQP  180 (197)
Q Consensus       163 ~~-~i~~l~~~i~~~~~~~  180 (197)
                      |. |++++|..+++.+.+.
T Consensus       172 g~~~V~e~F~~~~~~~~~~  190 (232)
T cd04174         172 SEKSIHSIFRSASLLCLNK  190 (232)
T ss_pred             CCcCHHHHHHHHHHHHHHh
Confidence            97 8999999999887664

Rnd1/Rho6 is a member of the novel Rho subfamily Rnd, together with Rnd2/Rho7 and Rnd3/RhoE/Rho8. Rnd1/Rho6 binds GTP but does not hydrolyze it to GDP, indicating that it is constitutively active. In rat, Rnd1/Rho6 is highly expressed in the cerebral cortex and hippocampus during synapse formation, and plays a role in spine formation. Rnd1/Rho6 is also expressed in the liver and in endothelial cells, and is upregulated in uterine myometrial cells during pregnancy. Like Rnd3/RhoE/Rho8, Rnd1/Rho6 is believed to function as an antagonist to RhoA. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.

>KOG0094 consensus GTPase Rab6/YPT6/Ryh1, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=8.5e-40  Score=219.36  Aligned_cols=166  Identities=35%  Similarity=0.566  Sum_probs=153.4

Q ss_pred             ceeEEEEEcCCCCCHHHHHHHHhhCCCCCCCCCceeeee-eEEEEECCeEEEEEEEeCCCccccccccccCcCCCcEEEE
Q 036449            5 RFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNF-SANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFIL   83 (197)
Q Consensus         5 ~~~~i~v~G~~~~GKstli~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~   83 (197)
                      +.+|++++|..+|||||||.+|..+.|...|.+|++..+ ...+.+.+..+.+++|||+||++|+++.+.|+++++++|+
T Consensus        21 k~~KlVflGdqsVGKTslItRf~yd~fd~~YqATIGiDFlskt~~l~d~~vrLQlWDTAGQERFrslipsY~Rds~vavi  100 (221)
T KOG0094|consen   21 KKYKLVFLGDQSVGKTSLITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVI  100 (221)
T ss_pred             eEEEEEEEccCccchHHHHHHHHHhhhcccccceeeeEEEEEEEEEcCcEEEEEEEecccHHHHhhhhhhhccCCeEEEE
Confidence            559999999999999999999999999999999997555 6778899999999999999999999999999999999999


Q ss_pred             EEeCCCchhHHHHHHHHHHHHhhhC-C-CCCEEEEeeCCcccCCcccccCCCCCCcccHHHHHHHHHHhCCCceEEeccC
Q 036449           84 AFSLISKASYENVSKKWIPELKHYA-P-GVPIILVGTKLDLRDDKQFFIDHPGAVPISTAQGEELRKLIGAPAYIECSSK  161 (197)
Q Consensus        84 v~d~~~~~s~~~~~~~~~~~i~~~~-~-~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~  161 (197)
                      |||++|..||+.. ..|++.+.... + +..+++||||.||.+.++          +..+++...++++++ .|+++||+
T Consensus       101 VyDit~~~Sfe~t-~kWi~dv~~e~gs~~viI~LVGnKtDL~dkrq----------vs~eEg~~kAkel~a-~f~etsak  168 (221)
T KOG0094|consen  101 VYDITDRNSFENT-SKWIEDVRRERGSDDVIIFLVGNKTDLSDKRQ----------VSIEEGERKAKELNA-EFIETSAK  168 (221)
T ss_pred             EEeccccchHHHH-HHHHHHHHhccCCCceEEEEEcccccccchhh----------hhHHHHHHHHHHhCc-EEEEeccc
Confidence            9999999999999 89998888776 4 578889999999988776          889999999999999 99999999


Q ss_pred             CCCCHHHHHHHHHHHHcCCCc
Q 036449          162 TQQNVKAVFDAAIRVVLQPPK  182 (197)
Q Consensus       162 ~~~~i~~l~~~i~~~~~~~~~  182 (197)
                      .|.||+++|..|...+.....
T Consensus       169 ~g~NVk~lFrrIaa~l~~~~~  189 (221)
T KOG0094|consen  169 AGENVKQLFRRIAAALPGMEV  189 (221)
T ss_pred             CCCCHHHHHHHHHHhccCccc
Confidence            999999999999998877643

>cd04172 Rnd3_RhoE_Rho8 Rnd3/RhoE/Rho8 subfamily

Probab=100.00  E-value=4.9e-39  Score=224.04  Aligned_cols=177  Identities=37%  Similarity=0.709  Sum_probs=152.9

Q ss_pred             CCceeEEEEEcCCCCCHHHHHHHHhhCCCCCCCCCceeeeeeEEEEECCeEEEEEEEeCCCccccccccccCcCCCcEEE
Q 036449            3 ASRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFI   82 (197)
Q Consensus         3 ~~~~~~i~v~G~~~~GKstli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i   82 (197)
                      +...+||+++|.+|+|||||+.++..+.+...+.||.+..+...+.+++..+.+++|||+|++.|..++..+++++|++|
T Consensus         2 ~~~~~KivvvGd~~vGKTsli~~~~~~~f~~~~~pT~~~~~~~~~~~~~~~~~l~iwDtaG~e~~~~~~~~~~~~ad~~i   81 (182)
T cd04172           2 QNVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYTASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDSDAVL   81 (182)
T ss_pred             CcceEEEEEECCCCCCHHHHHHHHHhCCCCCccCCceeeeeEEEEEECCEEEEEEEEECCCchhhHhhhhhhcCCCCEEE
Confidence            35678999999999999999999999999999999998887777888999999999999999999999999999999999


Q ss_pred             EEEeCCCchhHHHHHHHHHHHHhhhCCCCCEEEEeeCCcccCCcccc--cCCCCCCcccHHHHHHHHHHhCCCceEEecc
Q 036449           83 LAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLRDDKQFF--IDHPGAVPISTAQGEELRKLIGAPAYIECSS  160 (197)
Q Consensus        83 ~v~d~~~~~s~~~~~~~~~~~i~~~~~~~~~ivv~nK~D~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa  160 (197)
                      +|||++++.+|+.+...|+..+....++.|+++||||+|+.+.....  ......+.++.++++++++..++.+|+||||
T Consensus        82 lvyDit~~~Sf~~~~~~w~~~i~~~~~~~piilVgNK~DL~~~~~~~~~~~~~~~~~v~~~~~~~~a~~~~~~~~~E~SA  161 (182)
T cd04172          82 ICFDISRPETLDSVLKKWKGEIQEFCPNTKMLLVGCKSDLRTDLTTLVELSNHRQTPVSYDQGANMAKQIGAATYIECSA  161 (182)
T ss_pred             EEEECCCHHHHHHHHHHHHHHHHHHCCCCCEEEEeEChhhhcChhhHHHHHhcCCCCCCHHHHHHHHHHcCCCEEEECCc
Confidence            99999999999997679999998887899999999999996421100  0001123478899999999999658999999


Q ss_pred             CCCCC-HHHHHHHHHHHHcC
Q 036449          161 KTQQN-VKAVFDAAIRVVLQ  179 (197)
Q Consensus       161 ~~~~~-i~~l~~~i~~~~~~  179 (197)
                      ++|.| |+++|..+++.+..
T Consensus       162 k~~~n~v~~~F~~~~~~~~~  181 (182)
T cd04172         162 LQSENSVRDIFHVATLACVN  181 (182)
T ss_pred             CCCCCCHHHHHHHHHHHHhc
Confidence            99998 99999999986543

Rnd3/RhoE/Rho8 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd2/Rho7. Rnd3/RhoE is known to bind the serine-threonine kinase ROCK I. Unphosphorylated Rnd3/RhoE associates primarily with membranes, but ROCK I-phosphorylated Rnd3/RhoE localizes in the cytosol. Phosphorylation of Rnd3/RhoE correlates with its activity in disrupting RhoA-induced stress fibers and inhibiting Ras-induced fibroblast transformation. In cells that lack stress fibers, such as macrophages and monocytes, Rnd3/RhoE induces a redistribution of actin, causing morphological changes in the cell. In addition, Rnd3/RhoE has been shown to inhibit cell cycle progression in G1 phase at a point upstream of the pRb family pocket protein checkpoint. Rnd3/RhoE has also been shown to inhibit Ras- and Raf-induced fibroblast transformation. In mammary epithelial tumor cells, Rnd3/RhoE regulates the assembly of the apical junction complex and tight

>cd04121 Rab40 Rab40 subfamily

Probab=100.00  E-value=5.5e-39  Score=224.85  Aligned_cols=180  Identities=29%  Similarity=0.521  Sum_probs=154.0

Q ss_pred             CceeEEEEEcCCCCCHHHHHHHHhhCCCCCCCCCceeeee-eEEEEECCeEEEEEEEeCCCccccccccccCcCCCcEEE
Q 036449            4 SRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNF-SANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFI   82 (197)
Q Consensus         4 ~~~~~i~v~G~~~~GKstli~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i   82 (197)
                      ...+||+++|..|||||||+.++..+.+...+.++.+..+ ...+.+++..+.+++||++|+++|..++..+++++|++|
T Consensus         4 ~~~~KivviG~~~vGKTsll~~~~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~iwDt~G~~~~~~l~~~~~~~ad~il   83 (189)
T cd04121           4 DYLLKFLLVGDSDVGKGEILASLQDGSTESPYGYNMGIDYKTTTILLDGRRVKLQLWDTSGQGRFCTIFRSYSRGAQGII   83 (189)
T ss_pred             CceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCcceeEEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHhcCCCEEE
Confidence            4679999999999999999999999988888777775444 455677888899999999999999999999999999999


Q ss_pred             EEEeCCCchhHHHHHHHHHHHHhhhCCCCCEEEEeeCCcccCCcccccCCCCCCcccHHHHHHHHHHhCCCceEEeccCC
Q 036449           83 LAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPISTAQGEELRKLIGAPAYIECSSKT  162 (197)
Q Consensus        83 ~v~d~~~~~s~~~~~~~~~~~i~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~  162 (197)
                      +|||++++.+|+.+ ..|++.+....++.|++|||||.|+.+.+.          ++.++++.+++..+. +|++|||++
T Consensus        84 lVfD~t~~~Sf~~~-~~w~~~i~~~~~~~piilVGNK~DL~~~~~----------v~~~~~~~~a~~~~~-~~~e~SAk~  151 (189)
T cd04121          84 LVYDITNRWSFDGI-DRWIKEIDEHAPGVPKILVGNRLHLAFKRQ----------VATEQAQAYAERNGM-TFFEVSPLC  151 (189)
T ss_pred             EEEECcCHHHHHHH-HHHHHHHHHhCCCCCEEEEEECccchhccC----------CCHHHHHHHHHHcCC-EEEEecCCC
Confidence            99999999999999 789999987778999999999999976543          778899999999987 899999999


Q ss_pred             CCCHHHHHHHHHHHHcCCCch---hhhhhccccccc
Q 036449          163 QQNVKAVFDAAIRVVLQPPKT---KKKKNKAQKACS  195 (197)
Q Consensus       163 ~~~i~~l~~~i~~~~~~~~~~---~~~~~~~~~~c~  195 (197)
                      |.||+++|+++++.+......   +.++.-..+.|-
T Consensus       152 g~~V~~~F~~l~~~i~~~~~~~~~~~~~~~~~~~~~  187 (189)
T cd04121         152 NFNITESFTELARIVLMRHGRPPQSPPQNCSRNSCK  187 (189)
T ss_pred             CCCHHHHHHHHHHHHHHhcCCCCCCCCccccCCccc
Confidence            999999999999988754332   223344444453

This subfamily contains Rab40a, Rab40b, and Rab40c, which are all highly homologous. In rat, Rab40c is localized to the perinuclear recycling compartment (PRC), and is distributed in a tissue-specific manor, with high expression in brain, heart, kidney, and testis, low expression in lung and liver, and no expression in spleen and skeletal muscle. Rab40c is highly expressed in differentiated oligodendrocytes but minimally expressed in oligodendrocyte progenitors, suggesting a role in the vesicular transport of myelin components. Unlike most other Ras-superfamily proteins, Rab40c was shown to have a much lower affinity for GTP, and an affinity for GDP that is lower than for GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide d

>KOG0080 consensus GTPase Rab18, small G protein superfamily [General function prediction only]

Probab=100.00  E-value=2.7e-39  Score=210.29  Aligned_cols=165  Identities=32%  Similarity=0.644  Sum_probs=153.2

Q ss_pred             ceeEEEEEcCCCCCHHHHHHHHhhCCCCCCCCCceeeee-eEEEEECCeEEEEEEEeCCCccccccccccCcCCCcEEEE
Q 036449            5 RFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNF-SANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFIL   83 (197)
Q Consensus         5 ~~~~i~v~G~~~~GKstli~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~   83 (197)
                      ..+||+++|.+|+|||||+.+|..+.|.+..+.|++..+ ...+.+++..+++.+|||+||++|+.+.+.|++.+.++|+
T Consensus        10 ~t~KiLlIGeSGVGKSSLllrFv~~~fd~~~~~tIGvDFkvk~m~vdg~~~KlaiWDTAGqErFRtLTpSyyRgaqGiIl   89 (209)
T KOG0080|consen   10 TTFKILLIGESGVGKSSLLLRFVSNTFDDLHPTTIGVDFKVKVMQVDGKRLKLAIWDTAGQERFRTLTPSYYRGAQGIIL   89 (209)
T ss_pred             eeEEEEEEccCCccHHHHHHHHHhcccCccCCceeeeeEEEEEEEEcCceEEEEEEeccchHhhhccCHhHhccCceeEE
Confidence            459999999999999999999999999998888787555 5678899999999999999999999999999999999999


Q ss_pred             EEeCCCchhHHHHHHHHHHHHhhhC--CCCCEEEEeeCCcccCCcccccCCCCCCcccHHHHHHHHHHhCCCceEEeccC
Q 036449           84 AFSLISKASYENVSKKWIPELKHYA--PGVPIILVGTKLDLRDDKQFFIDHPGAVPISTAQGEELRKLIGAPAYIECSSK  161 (197)
Q Consensus        84 v~d~~~~~s~~~~~~~~~~~i~~~~--~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~  161 (197)
                      |||++.+++|..+ +.|++.+..+.  +++..++|+||+|..+++.          ++.+++..|++++++ -|+|+||+
T Consensus        90 VYDVT~Rdtf~kL-d~W~~Eld~Ystn~diikmlVgNKiDkes~R~----------V~reEG~kfAr~h~~-LFiE~SAk  157 (209)
T KOG0080|consen   90 VYDVTSRDTFVKL-DIWLKELDLYSTNPDIIKMLVGNKIDKESERV----------VDREEGLKFARKHRC-LFIECSAK  157 (209)
T ss_pred             EEEccchhhHHhH-HHHHHHHHhhcCCccHhHhhhcccccchhccc----------ccHHHHHHHHHhhCc-EEEEcchh
Confidence            9999999999999 99999999887  7888899999999877665          899999999999999 89999999


Q ss_pred             CCCCHHHHHHHHHHHHcCCC
Q 036449          162 TQQNVKAVFDAAIRVVLQPP  181 (197)
Q Consensus       162 ~~~~i~~l~~~i~~~~~~~~  181 (197)
                      +.+|+...|+.++..+.+.+
T Consensus       158 t~~~V~~~FeelveKIi~tp  177 (209)
T KOG0080|consen  158 TRENVQCCFEELVEKIIETP  177 (209)
T ss_pred             hhccHHHHHHHHHHHHhcCc
Confidence            99999999999999988764

>cd04134 Rho3 Rho3 subfamily

Probab=100.00  E-value=2.2e-38  Score=222.80  Aligned_cols=187  Identities=43%  Similarity=0.716  Sum_probs=156.5

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhhCCCCCCCCCceeeeeeEEEEECCeEEEEEEEeCCCccccccccccCcCCCcEEEEEEe
Q 036449            7 IKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFS   86 (197)
Q Consensus         7 ~~i~v~G~~~~GKstli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d   86 (197)
                      .||+++|.+|||||||++++..+.+...+.+|.+..+...+.+++..+.+++||++|++.|..++..++.+++++|+|||
T Consensus         1 ~kivivG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~i~~~~~~~~l~i~Dt~G~~~~~~l~~~~~~~a~~~ilv~d   80 (189)
T cd04134           1 RKVVVLGDGACGKTSLLNVFTRGYFPQVYEPTVFENYVHDIFVDGLHIELSLWDTAGQEEFDRLRSLSYADTDVIMLCFS   80 (189)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCCCCccCCcceeeeEEEEEECCEEEEEEEEECCCChhccccccccccCCCEEEEEEE
Confidence            38999999999999999999999998888889877777677778888999999999999999999999999999999999


Q ss_pred             CCCchhHHHHHHHHHHHHhhhCCCCCEEEEeeCCcccCCcccc--cCCCCCCcccHHHHHHHHHHhCCCceEEeccCCCC
Q 036449           87 LISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLRDDKQFF--IDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQQ  164 (197)
Q Consensus        87 ~~~~~s~~~~~~~~~~~i~~~~~~~~~ivv~nK~D~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~  164 (197)
                      ++++++|+.+...|+..+....++.|+++|+||+|+.+.....  ........+..+++..++...+..+|+++||++|.
T Consensus        81 v~~~~sf~~~~~~~~~~i~~~~~~~piilvgNK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~SAk~~~  160 (189)
T cd04134          81 VDSPDSLENVESKWLGEIREHCPGVKLVLVALKCDLREARNERDDLQRYGKHTISYEEGLAVAKRINALRYLECSAKLNR  160 (189)
T ss_pred             CCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhhccChhhHHHHhhccCCCCCHHHHHHHHHHcCCCEEEEccCCcCC
Confidence            9999999998557999888777899999999999997643210  00111123566778888888875589999999999


Q ss_pred             CHHHHHHHHHHHHcCCCchhhhhhccccccccC
Q 036449          165 NVKAVFDAAIRVVLQPPKTKKKKNKAQKACSIL  197 (197)
Q Consensus       165 ~i~~l~~~i~~~~~~~~~~~~~~~~~~~~c~~~  197 (197)
                      |++++|.++++.+.....    ..+.+++|+||
T Consensus       161 ~v~e~f~~l~~~~~~~~~----~~~~~~~~~~~  189 (189)
T cd04134         161 GVNEAFTEAARVALNVRP----PHPHSSACTIA  189 (189)
T ss_pred             CHHHHHHHHHHHHhcccc----cCcCCCcceeC
Confidence            999999999999986544    44567789887

Rho3 is a member of the Rho family found only in fungi. Rho3 is believed to regulate cell polarity by interacting with the diaphanous/formin family protein For3 to control both the actin cytoskeleton and microtubules. Rho3 is also believed to have a direct role in exocytosis that is independent of its role in regulating actin polarity. The function in exocytosis may be two-pronged: first, in the transport of post-Golgi vesicles from the mother cell to the bud, mediated by myosin (Myo2); second, in the docking and fusion of vesicles to the plasma membrane, mediated by an exocyst (Exo70) protein. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.

>cd04132 Rho4_like Rho4-like subfamily

Probab=100.00  E-value=1.4e-38  Score=223.73  Aligned_cols=185  Identities=49%  Similarity=0.875  Sum_probs=158.9

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhhCCCCCCCCCceeeeeeEEEEEC-CeEEEEEEEeCCCccccccccccCcCCCcEEEEEE
Q 036449            7 IKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVN-GSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAF   85 (197)
Q Consensus         7 ~~i~v~G~~~~GKstli~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~   85 (197)
                      +||+++|.+|+|||||++++..+.+...+.++.+..+...+... +..+.+++|||||++++..++..++.++|++|+||
T Consensus         1 ~ki~vvG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~~i~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~ii~v~   80 (187)
T cd04132           1 KKIVVVGDGGCGKTCLLIVYSQGKFPEEYVPTVFENYVTNIQGPNGKIIELALWDTAGQEEYDRLRPLSYPDVDVLLICY   80 (187)
T ss_pred             CeEEEECCCCCCHHHHHHHHHhCcCCCCCCCeeeeeeEEEEEecCCcEEEEEEEECCCchhHHHHHHHhCCCCCEEEEEE
Confidence            58999999999999999999999998888888877766666665 67789999999999999999999999999999999


Q ss_pred             eCCCchhHHHHHHHHHHHHhhhCCCCCEEEEeeCCcccCCcccccCCCCCCcccHHHHHHHHHHhCCCceEEeccCCCCC
Q 036449           86 SLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQQN  165 (197)
Q Consensus        86 d~~~~~s~~~~~~~~~~~i~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~  165 (197)
                      |++++++++.+...|+..+....++.|+++|+||.|+.....      ....+..+++++++..++..+++++||++|.|
T Consensus        81 d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~------~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~~~  154 (187)
T cd04132          81 AVDNPTSLDNVEDKWFPEVNHFCPGTPIMLVGLKTDLRKDKN------LDRKVTPAQAESVAKKQGAFAYLECSAKTMEN  154 (187)
T ss_pred             ECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEeChhhhhCcc------ccCCcCHHHHHHHHHHcCCcEEEEccCCCCCC
Confidence            999999999986678888876667899999999999965331      12235677888999998876899999999999


Q ss_pred             HHHHHHHHHHHHcCCCch-hhhhhccccccccC
Q 036449          166 VKAVFDAAIRVVLQPPKT-KKKKNKAQKACSIL  197 (197)
Q Consensus       166 i~~l~~~i~~~~~~~~~~-~~~~~~~~~~c~~~  197 (197)
                      ++++|..+++.+...... +..+.+++.+|++|
T Consensus       155 v~~~f~~l~~~~~~~~~~~~~~~~~~~~~c~~~  187 (187)
T cd04132         155 VEEVFDTAIEEALKKEGKAIFKKKKKKRKCVVL  187 (187)
T ss_pred             HHHHHHHHHHHHHhhhhhhhhccCCCCcccccC
Confidence            999999999988876544 55677788899987

Rho4 is a GTPase that controls septum degradation by regulating secretion of Eng1 or Agn1 during cytokinesis. Rho4 also plays a role in cell morphogenesis. Rho4 regulates septation and cell morphology by controlling the actin cytoskeleton and cytoplasmic microtubules. The localization of Rho4 is modulated by Rdi1, which may function as a GDI, and by Rga9, which is believed to function as a GAP. In S. pombe, both Rho4 deletion and Rho4 overexpression result in a defective cell wall, suggesting a role for Rho4 in maintaining cell wall integrity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.

>cd04131 Rnd Rnd subfamily

Probab=100.00  E-value=2.4e-38  Score=220.17  Aligned_cols=172  Identities=37%  Similarity=0.719  Sum_probs=149.1

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhhCCCCCCCCCceeeeeeEEEEECCeEEEEEEEeCCCccccccccccCcCCCcEEEEEEe
Q 036449            7 IKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFS   86 (197)
Q Consensus         7 ~~i~v~G~~~~GKstli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d   86 (197)
                      +||+++|.+|||||||++++..+.+...+.||.+..+...+.+++..+.+++|||+|++.|..+++.++.++|++|+|||
T Consensus         2 ~Kiv~vG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~l~iwDt~G~~~~~~~~~~~~~~a~~~ilvfd   81 (178)
T cd04131           2 CKIVVVGDVQCGKTALLQVFAKDCYPETYVPTVFENYTASFEIDEQRIELSLWDTSGSPYYDNVRPLCYPDSDAVLICFD   81 (178)
T ss_pred             eEEEEECCCCCCHHHHHHHHHhCcCCCCcCCceEEEEEEEEEECCEEEEEEEEECCCchhhhhcchhhcCCCCEEEEEEE
Confidence            79999999999999999999999999999999987777778888999999999999999999999999999999999999


Q ss_pred             CCCchhHHHHHHHHHHHHhhhCCCCCEEEEeeCCcccCCcccc--cCCCCCCcccHHHHHHHHHHhCCCceEEeccCCCC
Q 036449           87 LISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLRDDKQFF--IDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQQ  164 (197)
Q Consensus        87 ~~~~~s~~~~~~~~~~~i~~~~~~~~~ivv~nK~D~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~  164 (197)
                      ++++++|+.+...|+..+....++.|+++||||+|+.+.....  ..+...+.++.++++++++.+++.+|+||||++|.
T Consensus        82 it~~~Sf~~~~~~w~~~i~~~~~~~~iilVgnK~DL~~~~~~~~~~~~~~~~~v~~~e~~~~a~~~~~~~~~E~SA~~~~  161 (178)
T cd04131          82 ISRPETLDSVLKKWRGEIQEFCPNTKVLLVGCKTDLRTDLSTLMELSHQRQAPVSYEQGCAIAKQLGAEIYLECSAFTSE  161 (178)
T ss_pred             CCChhhHHHHHHHHHHHHHHHCCCCCEEEEEEChhhhcChhHHHHHHhcCCCCCCHHHHHHHHHHhCCCEEEECccCcCC
Confidence            9999999996578999998888899999999999996421100  00011234788999999999997679999999999


Q ss_pred             C-HHHHHHHHHHHHc
Q 036449          165 N-VKAVFDAAIRVVL  178 (197)
Q Consensus       165 ~-i~~l~~~i~~~~~  178 (197)
                      + ++++|..+++...
T Consensus       162 ~~v~~~F~~~~~~~~  176 (178)
T cd04131         162 KSVRDIFHVATMACL  176 (178)
T ss_pred             cCHHHHHHHHHHHHh
Confidence            5 9999999998654

The Rnd subfamily contains Rnd1/Rho6, Rnd2/Rho7, and Rnd3/RhoE/Rho8. These novel Rho family proteins have substantial structural differences compared to other Rho members, including N- and C-terminal extensions relative to other Rhos. Rnd3/RhoE is farnesylated at the C-terminal prenylation site, unlike most other Rho proteins that are geranylgeranylated. In addition, Rnd members are unable to hydrolyze GTP and are resistant to GAP activity. They are believed to exist only in the GTP-bound conformation, and are antagonists of RhoA activity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.

>KOG0078 consensus GTP-binding protein SEC4, small G protein superfamily, and related Ras family GTP-binding proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=6.1e-39  Score=218.88  Aligned_cols=168  Identities=34%  Similarity=0.645  Sum_probs=156.0

Q ss_pred             CCceeEEEEEcCCCCCHHHHHHHHhhCCCCCCCCCceeeee-eEEEEECCeEEEEEEEeCCCccccccccccCcCCCcEE
Q 036449            3 ASRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNF-SANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVF   81 (197)
Q Consensus         3 ~~~~~~i~v~G~~~~GKstli~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~   81 (197)
                      ....++|+++|.+|||||+++.+|..+.|...+..|.+..+ ...+.+++..+.+++|||.||++|+.+...|++.|+++
T Consensus         9 ~d~~~kvlliGDs~vGKt~~l~rf~d~~f~~~~~sTiGIDFk~kti~l~g~~i~lQiWDtaGQerf~ti~~sYyrgA~gi   88 (207)
T KOG0078|consen    9 YDYLFKLLLIGDSGVGKTCLLLRFSDDSFNTSFISTIGIDFKIKTIELDGKKIKLQIWDTAGQERFRTITTAYYRGAMGI   88 (207)
T ss_pred             cceEEEEEEECCCCCchhHhhhhhhhccCcCCccceEEEEEEEEEEEeCCeEEEEEEEEcccchhHHHHHHHHHhhcCee
Confidence            45679999999999999999999999999999999997555 67788999999999999999999999999999999999


Q ss_pred             EEEEeCCCchhHHHHHHHHHHHHhhhC-CCCCEEEEeeCCcccCCcccccCCCCCCcccHHHHHHHHHHhCCCceEEecc
Q 036449           82 ILAFSLISKASYENVSKKWIPELKHYA-PGVPIILVGTKLDLRDDKQFFIDHPGAVPISTAQGEELRKLIGAPAYIECSS  160 (197)
Q Consensus        82 i~v~d~~~~~s~~~~~~~~~~~i~~~~-~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa  160 (197)
                      ++|||+++..||+.+ ..|+..+.... ++.|+++||||+|+...+.          ++.+.++++|.++|. .|+|+||
T Consensus        89 ~LvyDitne~Sfeni-~~W~~~I~e~a~~~v~~~LvGNK~D~~~~R~----------V~~e~ge~lA~e~G~-~F~EtSA  156 (207)
T KOG0078|consen   89 LLVYDITNEKSFENI-RNWIKNIDEHASDDVVKILVGNKCDLEEKRQ----------VSKERGEALAREYGI-KFFETSA  156 (207)
T ss_pred             EEEEEccchHHHHHH-HHHHHHHHhhCCCCCcEEEeecccccccccc----------ccHHHHHHHHHHhCC-eEEEccc
Confidence            999999999999999 67999999999 5999999999999987665          899999999999999 9999999


Q ss_pred             CCCCCHHHHHHHHHHHHcCCCc
Q 036449          161 KTQQNVKAVFDAAIRVVLQPPK  182 (197)
Q Consensus       161 ~~~~~i~~l~~~i~~~~~~~~~  182 (197)
                      ++|.||++.|-.|++.+..+..
T Consensus       157 k~~~NI~eaF~~La~~i~~k~~  178 (207)
T KOG0078|consen  157 KTNFNIEEAFLSLARDILQKLE  178 (207)
T ss_pred             cCCCCHHHHHHHHHHHHHhhcc
Confidence            9999999999999998886433

>cd04173 Rnd2_Rho7 Rnd2/Rho7 subfamily

Probab=100.00  E-value=2.1e-38  Score=226.30  Aligned_cols=174  Identities=36%  Similarity=0.727  Sum_probs=151.2

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhhCCCCCCCCCceeeeeeEEEEECCeEEEEEEEeCCCccccccccccCcCCCcEEEEEEe
Q 036449            7 IKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFS   86 (197)
Q Consensus         7 ~~i~v~G~~~~GKstli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d   86 (197)
                      +||+|+|.+|||||||+.+|..+.++..+.||....+...+.+++..+.+.+|||+|++.|..+++.++.++|++|+|||
T Consensus         2 ~KIvvvGd~~vGKTsLi~~~~~~~f~~~y~pTi~~~~~~~~~~~~~~v~L~iwDt~G~e~~~~l~~~~~~~~d~illvfd   81 (222)
T cd04173           2 CKIVVVGDAECGKTALLQVFAKDAYPGSYVPTVFENYTASFEIDKRRIELNMWDTSGSSYYDNVRPLAYPDSDAVLICFD   81 (222)
T ss_pred             eEEEEECCCCCCHHHHHHHHHcCCCCCccCCccccceEEEEEECCEEEEEEEEeCCCcHHHHHHhHHhccCCCEEEEEEE
Confidence            79999999999999999999999999999999988887778889999999999999999999999999999999999999


Q ss_pred             CCCchhHHHHHHHHHHHHhhhCCCCCEEEEeeCCcccCCcccc--cCCCCCCcccHHHHHHHHHHhCCCceEEeccCCCC
Q 036449           87 LISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLRDDKQFF--IDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQQ  164 (197)
Q Consensus        87 ~~~~~s~~~~~~~~~~~i~~~~~~~~~ivv~nK~D~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~  164 (197)
                      ++++++|+.+...|...+....++.|+++||||+|+.......  ........++.+++..+++..++.+|+||||+++.
T Consensus        82 is~~~Sf~~i~~~w~~~~~~~~~~~piiLVgnK~DL~~~~~~~~~~~~~~~~pIs~e~g~~~ak~~~~~~y~E~SAk~~~  161 (222)
T cd04173          82 ISRPETLDSVLKKWQGETQEFCPNAKVVLVGCKLDMRTDLATLRELSKQRLIPVTHEQGTVLAKQVGAVSYVECSSRSSE  161 (222)
T ss_pred             CCCHHHHHHHHHHHHHHHHhhCCCCCEEEEEECcccccchhhhhhhhhccCCccCHHHHHHHHHHcCCCEEEEcCCCcCC
Confidence            9999999999778988887777899999999999996532110  00111234778899999999997689999999988


Q ss_pred             C-HHHHHHHHHHHHcCC
Q 036449          165 N-VKAVFDAAIRVVLQP  180 (197)
Q Consensus       165 ~-i~~l~~~i~~~~~~~  180 (197)
                      + |+++|...+......
T Consensus       162 ~~V~~~F~~~~~~~~~~  178 (222)
T cd04173         162 RSVRDVFHVATVASLGR  178 (222)
T ss_pred             cCHHHHHHHHHHHHHhc
Confidence            5 999999999977664

Rnd2/Rho7 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd3/RhoE/Rho8. Rnd2/Rho7 is transiently expressed in radially migrating cells in the brain while they are within the subventricular zone of the hippocampus and cerebral cortex. These migrating cells typically develop into pyramidal neurons. Cells that exogenously expressed Rnd2/Rho7 failed to migrate to upper layers of the brain, suggesting that Rnd2/Rho7 plays a role in the radial migration and morphological changes of developing pyramidal neurons, and that Rnd2/Rho7 degradation is necessary for proper cellular migration. The Rnd2/Rho7 GEF Rapostlin is found primarily in the brain and together with Rnd2/Rho7 induces dendrite branching. Unlike Rnd1/Rho6 and Rnd3/RhoE/Rho8, which are RhoA antagonists, Rnd2/Rho7 binds the GEF Pragmin and significantly stimulates RhoA activity and Rho-A mediated cell contraction. Rnd2/Rho7 is also found to be expressed in sperma

>KOG0098 consensus GTPase Rab2, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=4.6e-39  Score=214.20  Aligned_cols=169  Identities=29%  Similarity=0.574  Sum_probs=157.4

Q ss_pred             CCCCceeEEEEEcCCCCCHHHHHHHHhhCCCCCCCCCceeeee-eEEEEECCeEEEEEEEeCCCccccccccccCcCCCc
Q 036449            1 MSASRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNF-SANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGAD   79 (197)
Q Consensus         1 m~~~~~~~i~v~G~~~~GKstli~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~   79 (197)
                      |+....+|++++|..|||||+|+.+|..+.|.+.+..|.+..+ ...+.++++.+++++|||+||+.|++....|++.+.
T Consensus         1 m~~~~~fKyIiiGd~gVGKSclllrf~~krF~~~hd~TiGvefg~r~~~id~k~IKlqiwDtaGqe~frsv~~syYr~a~   80 (216)
T KOG0098|consen    1 MSYAYLFKYIIIGDTGVGKSCLLLRFTDKRFQPVHDLTIGVEFGARMVTIDGKQIKLQIWDTAGQESFRSVTRSYYRGAA   80 (216)
T ss_pred             CCccceEEEEEECCCCccHHHHHHHHhccCccccccceeeeeeceeEEEEcCceEEEEEEecCCcHHHHHHHHHHhccCc
Confidence            6778889999999999999999999999999999999997666 567889999999999999999999999999999999


Q ss_pred             EEEEEEeCCCchhHHHHHHHHHHHHhhhC-CCCCEEEEeeCCcccCCcccccCCCCCCcccHHHHHHHHHHhCCCceEEe
Q 036449           80 VFILAFSLISKASYENVSKKWIPELKHYA-PGVPIILVGTKLDLRDDKQFFIDHPGAVPISTAQGEELRKLIGAPAYIEC  158 (197)
Q Consensus        80 ~~i~v~d~~~~~s~~~~~~~~~~~i~~~~-~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  158 (197)
                      ++|+|||++++++|..+ ..|+..++... +|+.++++|||+||...+.          ++.++++.||++.+. .|+++
T Consensus        81 GalLVydit~r~sF~hL-~~wL~D~rq~~~~NmvImLiGNKsDL~~rR~----------Vs~EEGeaFA~ehgL-ifmET  148 (216)
T KOG0098|consen   81 GALLVYDITRRESFNHL-TSWLEDARQHSNENMVIMLIGNKSDLEARRE----------VSKEEGEAFAREHGL-IFMET  148 (216)
T ss_pred             ceEEEEEccchhhHHHH-HHHHHHHHHhcCCCcEEEEEcchhhhhcccc----------ccHHHHHHHHHHcCc-eeehh
Confidence            99999999999999999 88998888886 8999999999999987665          999999999999998 89999


Q ss_pred             ccCCCCCHHHHHHHHHHHHcCCC
Q 036449          159 SSKTQQNVKAVFDAAIRVVLQPP  181 (197)
Q Consensus       159 sa~~~~~i~~l~~~i~~~~~~~~  181 (197)
                      ||+++.|++|.|..+...+++..
T Consensus       149 Sakt~~~VEEaF~nta~~Iy~~~  171 (216)
T KOG0098|consen  149 SAKTAENVEEAFINTAKEIYRKI  171 (216)
T ss_pred             hhhhhhhHHHHHHHHHHHHHHHH
Confidence            99999999999999999887753

>cd04144 Ras2 Ras2 subfamily

Probab=100.00  E-value=2.1e-38  Score=223.20  Aligned_cols=178  Identities=38%  Similarity=0.635  Sum_probs=152.2

Q ss_pred             EEEEEcCCCCCHHHHHHHHhhCCCCCCCCCceeeeeeEEEEECCeEEEEEEEeCCCccccccccccCcCCCcEEEEEEeC
Q 036449            8 KCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSL   87 (197)
Q Consensus         8 ~i~v~G~~~~GKstli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~   87 (197)
                      ||+++|.+|||||||+++|..+.+...+.++.+..+.....+++..+.+++||+||+++|..++..++..+|++|+|||+
T Consensus         1 ki~ivG~~~vGKTsli~~l~~~~f~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~~ilv~d~   80 (190)
T cd04144           1 KLVVLGDGGVGKTALTIQLCLNHFVETYDPTIEDSYRKQVVVDGQPCMLEVLDTAGQEEYTALRDQWIREGEGFILVYSI   80 (190)
T ss_pred             CEEEECCCCCCHHHHHHHHHhCCCCccCCCchHhhEEEEEEECCEEEEEEEEECCCchhhHHHHHHHHHhCCEEEEEEEC
Confidence            68999999999999999999999988888888777766777888888999999999999999999999999999999999


Q ss_pred             CCchhHHHHHHHHHHHHhhhC----CCCCEEEEeeCCcccCCcccccCCCCCCcccHHHHHHHHHHhCCCceEEeccCCC
Q 036449           88 ISKASYENVSKKWIPELKHYA----PGVPIILVGTKLDLRDDKQFFIDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQ  163 (197)
Q Consensus        88 ~~~~s~~~~~~~~~~~i~~~~----~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~  163 (197)
                      +++++++.+ ..|+..+....    ++.|+++|+||+|+.+.+.          +...++..+++.++. +|+++||++|
T Consensus        81 ~~~~s~~~~-~~~~~~i~~~~~~~~~~~piilvgNK~Dl~~~~~----------v~~~~~~~~~~~~~~-~~~e~SAk~~  148 (190)
T cd04144          81 TSRSTFERV-ERFREQIQRVKDESAADVPIMIVGNKCDKVYERE----------VSTEEGAALARRLGC-EFIEASAKTN  148 (190)
T ss_pred             CCHHHHHHH-HHHHHHHHHHhcccCCCCCEEEEEEChhccccCc----------cCHHHHHHHHHHhCC-EEEEecCCCC
Confidence            999999998 67877776542    4789999999999976443          566777888888887 8999999999


Q ss_pred             CCHHHHHHHHHHHHcCCCch--------hhhhhccccccccC
Q 036449          164 QNVKAVFDAAIRVVLQPPKT--------KKKKNKAQKACSIL  197 (197)
Q Consensus       164 ~~i~~l~~~i~~~~~~~~~~--------~~~~~~~~~~c~~~  197 (197)
                      .|++++|+++++.+..+...        ..+..|++.+|.+|
T Consensus       149 ~~v~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  190 (190)
T cd04144         149 VNVERAFYTLVRALRQQRQGGQGPKGGPTKKKEKKKRKCVIM  190 (190)
T ss_pred             CCHHHHHHHHHHHHHHhhcccCCCcCCCCCcccccccCceeC
Confidence            99999999999987754332        33567777788776

The Ras2 subfamily, found exclusively in fungi, was first identified in Ustilago maydis. In U. maydis, Ras2 is regulated by Sql2, a protein that is homologous to GEFs (guanine nucleotide exchange factors) of the CDC25 family. Ras2 has been shown to induce filamentous growth, but the signaling cascade through which Ras2 and Sql2 regulate cell morphology is not known. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.

>cd04120 Rab12 Rab12 subfamily

Probab=100.00  E-value=5e-38  Score=221.90  Aligned_cols=162  Identities=32%  Similarity=0.590  Sum_probs=144.0

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhhCCCCCCCCCceeee-eeEEEEECCeEEEEEEEeCCCccccccccccCcCCCcEEEEEE
Q 036449            7 IKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDN-FSANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAF   85 (197)
Q Consensus         7 ~~i~v~G~~~~GKstli~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~   85 (197)
                      +.|+++|..|||||||++++..+.|...+.+|.+.. ....+.+++..+.+++||++|+++|..++..+++++|++|+||
T Consensus         1 ~~vvvlG~~gVGKTSli~r~~~~~f~~~~~~Ti~~~~~~~~i~~~~~~v~l~iwDtaGqe~~~~l~~~y~~~ad~iIlVf   80 (202)
T cd04120           1 LQVIIIGSRGVGKTSLMRRFTDDTFCEACKSGVGVDFKIKTVELRGKKIRLQIWDTAGQERFNSITSAYYRSAKGIILVY   80 (202)
T ss_pred             CEEEEECcCCCCHHHHHHHHHhCCCCCcCCCcceeEEEEEEEEECCEEEEEEEEeCCCchhhHHHHHHHhcCCCEEEEEE
Confidence            479999999999999999999999998888888644 4566778888899999999999999999999999999999999


Q ss_pred             eCCCchhHHHHHHHHHHHHhhhC-CCCCEEEEeeCCcccCCcccccCCCCCCcccHHHHHHHHHHh-CCCceEEeccCCC
Q 036449           86 SLISKASYENVSKKWIPELKHYA-PGVPIILVGTKLDLRDDKQFFIDHPGAVPISTAQGEELRKLI-GAPAYIECSSKTQ  163 (197)
Q Consensus        86 d~~~~~s~~~~~~~~~~~i~~~~-~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~sa~~~  163 (197)
                      |++++++|+.+ ..|+..+.... ++.|+++||||+|+...+.          +..+++.++++.. +. .|++|||++|
T Consensus        81 Dvtd~~Sf~~l-~~w~~~i~~~~~~~~piilVgNK~DL~~~~~----------v~~~~~~~~a~~~~~~-~~~etSAktg  148 (202)
T cd04120          81 DITKKETFDDL-PKWMKMIDKYASEDAELLLVGNKLDCETDRE----------ISRQQGEKFAQQITGM-RFCEASAKDN  148 (202)
T ss_pred             ECcCHHHHHHH-HHHHHHHHHhCCCCCcEEEEEECcccccccc----------cCHHHHHHHHHhcCCC-EEEEecCCCC
Confidence            99999999999 78998887765 6899999999999975443          6778888898876 55 8999999999


Q ss_pred             CCHHHHHHHHHHHHcCC
Q 036449          164 QNVKAVFDAAIRVVLQP  180 (197)
Q Consensus       164 ~~i~~l~~~i~~~~~~~  180 (197)
                      .|++++|.++++.+...
T Consensus       149 ~gV~e~F~~l~~~~~~~  165 (202)
T cd04120         149 FNVDEIFLKLVDDILKK  165 (202)
T ss_pred             CCHHHHHHHHHHHHHHh
Confidence            99999999999988654

Rab12 was first identified in canine cells, where it was localized to the Golgi complex. The specific function of Rab12 remains unknown, and inconsistent results about its cellular localization have been reported. More recent studies have identified Rab12 associated with post-Golgi vesicles, or with other small vesicle-like structures but not with the Golgi complex. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic

>cd01874 Cdc42 Cdc42 subfamily

Probab=100.00  E-value=1.4e-37  Score=216.16  Aligned_cols=172  Identities=55%  Similarity=0.991  Sum_probs=148.1

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHhhCCCCCCCCCceeeeeeEEEEECCeEEEEEEEeCCCccccccccccCcCCCcEEEEEE
Q 036449            6 FIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAF   85 (197)
Q Consensus         6 ~~~i~v~G~~~~GKstli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~   85 (197)
                      .+||+++|.+|+|||||+.++..+.+...+.||.+..+...+.+++..+.+++||++|+++|..++..++.++|++|+||
T Consensus         1 ~~ki~vvG~~~vGKTsl~~~~~~~~f~~~~~pt~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~a~~~ilv~   80 (175)
T cd01874           1 TIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCF   80 (175)
T ss_pred             CeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeeEEEEEECCEEEEEEEEECCCccchhhhhhhhcccCCEEEEEE
Confidence            37999999999999999999999999888999998777766778888899999999999999999999999999999999


Q ss_pred             eCCCchhHHHHHHHHHHHHhhhCCCCCEEEEeeCCcccCCcccc--cCCCCCCcccHHHHHHHHHHhCCCceEEeccCCC
Q 036449           86 SLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLRDDKQFF--IDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQ  163 (197)
Q Consensus        86 d~~~~~s~~~~~~~~~~~i~~~~~~~~~ivv~nK~D~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~  163 (197)
                      |++++++++.+...|+..+....++.|+++|+||+|+.+.....  ......+.+..++++++++..+...|+++||++|
T Consensus        81 d~~~~~s~~~~~~~w~~~i~~~~~~~piilvgnK~Dl~~~~~~~~~l~~~~~~~v~~~~~~~~a~~~~~~~~~e~SA~tg  160 (175)
T cd01874          81 SVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRDDPSTIEKLAKNKQKPITPETGEKLARDLKAVKYVECSALTQ  160 (175)
T ss_pred             ECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEECHhhhhChhhHHHhhhccCCCcCHHHHHHHHHHhCCcEEEEecCCCC
Confidence            99999999998557988888777889999999999986542211  1111234577889999999888558999999999


Q ss_pred             CCHHHHHHHHHHHH
Q 036449          164 QNVKAVFDAAIRVV  177 (197)
Q Consensus       164 ~~i~~l~~~i~~~~  177 (197)
                      .|++++|+.+++.+
T Consensus       161 ~~v~~~f~~~~~~~  174 (175)
T cd01874         161 KGLKNVFDEAILAA  174 (175)
T ss_pred             CCHHHHHHHHHHHh
Confidence            99999999999864

Cdc42 is an essential GTPase that belongs to the Rho family of Ras-like GTPases. These proteins act as molecular switches by responding to exogenous and/or endogenous signals and relaying those signals to activate downstream components of a biological pathway. Cdc42 transduces signals to the actin cytoskeleton to initiate and maintain polarized growth and to mitogen-activated protein morphogenesis. In the budding yeast Saccharomyces cerevisiae, Cdc42 plays an important role in multiple actin-dependent morphogenetic events such as bud emergence, mating-projection formation, and pseudohyphal growth. In mammalian cells, Cdc42 regulates a variety of actin-dependent events and induces the JNK/SAPK protein kinase cascade, which leads to the activation of transcription factors within the nucleus. Cdc42 mediates these processes through interactions with a myriad of downstream effectors, whose number and regulation we are just starting to understand. In addi

>PTZ00369 Ras-like protein; Provisional

Probab=100.00  E-value=8.5e-38  Score=219.91  Aligned_cols=182  Identities=35%  Similarity=0.570  Sum_probs=155.2

Q ss_pred             CceeEEEEEcCCCCCHHHHHHHHhhCCCCCCCCCceeeeeeEEEEECCeEEEEEEEeCCCccccccccccCcCCCcEEEE
Q 036449            4 SRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFIL   83 (197)
Q Consensus         4 ~~~~~i~v~G~~~~GKstli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~   83 (197)
                      ...+||+++|.+|+|||||++++..+.+...+.+|.+..+...+.+++..+.+++|||||+++|..++..++++++++++
T Consensus         3 ~~~~Ki~iiG~~~~GKTsLi~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~l~~~~~~~~d~iil   82 (189)
T PTZ00369          3 STEYKLVVVGGGGVGKSALTIQFIQNHFIDEYDPTIEDSYRKQCVIDEETCLLDILDTAGQEEYSAMRDQYMRTGQGFLC   82 (189)
T ss_pred             CcceEEEEECCCCCCHHHHHHHHhcCCCCcCcCCchhhEEEEEEEECCEEEEEEEEeCCCCccchhhHHHHhhcCCEEEE
Confidence            55799999999999999999999999998888888887777777888888999999999999999999999999999999


Q ss_pred             EEeCCCchhHHHHHHHHHHHHhhhC--CCCCEEEEeeCCcccCCcccccCCCCCCcccHHHHHHHHHHhCCCceEEeccC
Q 036449           84 AFSLISKASYENVSKKWIPELKHYA--PGVPIILVGTKLDLRDDKQFFIDHPGAVPISTAQGEELRKLIGAPAYIECSSK  161 (197)
Q Consensus        84 v~d~~~~~s~~~~~~~~~~~i~~~~--~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~  161 (197)
                      |||++++++++.+ ..|+..+....  ++.|+++|+||+|+.+...          +..+++..+++..+. +++++||+
T Consensus        83 v~D~s~~~s~~~~-~~~~~~i~~~~~~~~~piiiv~nK~Dl~~~~~----------i~~~~~~~~~~~~~~-~~~e~Sak  150 (189)
T PTZ00369         83 VYSITSRSSFEEI-ASFREQILRVKDKDRVPMILVGNKCDLDSERQ----------VSTGEGQELAKSFGI-PFLETSAK  150 (189)
T ss_pred             EEECCCHHHHHHH-HHHHHHHHHhcCCCCCCEEEEEECcccccccc----------cCHHHHHHHHHHhCC-EEEEeeCC
Confidence            9999999999998 67887776554  5889999999999865433          566777888888887 89999999


Q ss_pred             CCCCHHHHHHHHHHHHcCCC---chhhhhhccccccccC
Q 036449          162 TQQNVKAVFDAAIRVVLQPP---KTKKKKNKAQKACSIL  197 (197)
Q Consensus       162 ~~~~i~~l~~~i~~~~~~~~---~~~~~~~~~~~~c~~~  197 (197)
                      +|.|++++|.+|++.+....   .+.++++++++.|.++
T Consensus       151 ~~~gi~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~  189 (189)
T PTZ00369        151 QRVNVDEAFYELVREIRKYLKEDMPSQKQKKKGGLCLIL  189 (189)
T ss_pred             CCCCHHHHHHHHHHHHHHHhhccchhhhhhccCCeeeeC
Confidence            99999999999998776653   2333566666667764

>cd04141 Rit_Rin_Ric Rit/Rin/Ric subfamily

Probab=100.00  E-value=1.4e-37  Score=215.54  Aligned_cols=164  Identities=25%  Similarity=0.517  Sum_probs=146.8

Q ss_pred             ceeEEEEEcCCCCCHHHHHHHHhhCCCCCCCCCceeeeeeEEEEECCeEEEEEEEeCCCccccccccccCcCCCcEEEEE
Q 036449            5 RFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILA   84 (197)
Q Consensus         5 ~~~~i~v~G~~~~GKstli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v   84 (197)
                      +.+||+++|.+|||||||++++..+.+...+.+|.+..+...+.+++..+.+++||+||+++|..++..++..+|++|+|
T Consensus         1 ~~~ki~vvG~~~vGKTsL~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~l~~~~~~~~d~~ilv   80 (172)
T cd04141           1 REYKIVMLGAGGVGKSAVTMQFISHSFPDYHDPTIEDAYKQQARIDNEPALLDILDTAGQAEFTAMRDQYMRCGEGFIIC   80 (172)
T ss_pred             CceEEEEECCCCCcHHHHHHHHHhCCCCCCcCCcccceEEEEEEECCEEEEEEEEeCCCchhhHHHhHHHhhcCCEEEEE
Confidence            35899999999999999999999999988888998877777778888889999999999999999999999999999999


Q ss_pred             EeCCCchhHHHHHHHHHHHHhhhC--CCCCEEEEeeCCcccCCcccccCCCCCCcccHHHHHHHHHHhCCCceEEeccCC
Q 036449           85 FSLISKASYENVSKKWIPELKHYA--PGVPIILVGTKLDLRDDKQFFIDHPGAVPISTAQGEELRKLIGAPAYIECSSKT  162 (197)
Q Consensus        85 ~d~~~~~s~~~~~~~~~~~i~~~~--~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~  162 (197)
                      ||++++.+|+.+ ..|...+....  ++.|+++|+||+|+.+.+.          ++.++++.+++..+. +|++|||++
T Consensus        81 ~d~~~~~Sf~~~-~~~~~~i~~~~~~~~~piilvgNK~Dl~~~~~----------v~~~~~~~~a~~~~~-~~~e~Sa~~  148 (172)
T cd04141          81 YSVTDRHSFQEA-SEFKKLITRVRLTEDIPLVLVGNKVDLESQRQ----------VTTEEGRNLAREFNC-PFFETSAAL  148 (172)
T ss_pred             EECCchhHHHHH-HHHHHHHHHhcCCCCCCEEEEEEChhhhhcCc----------cCHHHHHHHHHHhCC-EEEEEecCC
Confidence            999999999999 67877777643  5899999999999976443          677888999998888 899999999


Q ss_pred             CCCHHHHHHHHHHHHcCC
Q 036449          163 QQNVKAVFDAAIRVVLQP  180 (197)
Q Consensus       163 ~~~i~~l~~~i~~~~~~~  180 (197)
                      |.||+++|+++++.+...
T Consensus       149 ~~~v~~~f~~l~~~~~~~  166 (172)
T cd04141         149 RHYIDDAFHGLVREIRRK  166 (172)
T ss_pred             CCCHHHHHHHHHHHHHHh
Confidence            999999999999987764

Rit (Ras-like protein in all tissues), Rin (Ras-like protein in neurons) and Ric (Ras-related protein which interacts with calmodulin) form a subfamily with several unique structural and functional characteristics. These proteins all lack a the C-terminal CaaX lipid-binding motif typical of Ras family proteins, and Rin and Ric contain calmodulin-binding domains. Rin, which is expressed only in neurons, induces neurite outgrowth in rat pheochromocytoma cells through its association with calmodulin and its activation of endogenous Rac/cdc42. Rit, which is ubiquitously expressed in mammals, inhibits growth-factor withdrawl-mediated apoptosis and induces neurite extension in pheochromocytoma cells. Rit and Rin are both able to form a ternary complex with PAR6, a cell polarity-regulating protein, and Rac/cdc42. This ternary complex is proposed to have physiological function in processes such as tumorigenesis. Activated Ric is likely to sign

>cd01871 Rac1_like Rac1-like subfamily

Probab=100.00  E-value=5.4e-37  Score=212.96  Aligned_cols=171  Identities=65%  Similarity=1.094  Sum_probs=147.4

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHhhCCCCCCCCCceeeeeeEEEEECCeEEEEEEEeCCCccccccccccCcCCCcEEEEEE
Q 036449            6 FIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAF   85 (197)
Q Consensus         6 ~~~i~v~G~~~~GKstli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~   85 (197)
                      .+||+++|.+|||||||+.++..+.+...+.++....+...+.+++..+.+++|||||++.|..++..++.++|++|+||
T Consensus         1 ~~ki~iiG~~~vGKSsli~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~   80 (174)
T cd01871           1 AIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFLICF   80 (174)
T ss_pred             CeEEEEECCCCCCHHHHHHHHhcCCCCCcCCCcceeeeEEEEEECCEEEEEEEEECCCchhhhhhhhhhcCCCCEEEEEE
Confidence            37999999999999999999999999999999987777777778888899999999999999999999999999999999


Q ss_pred             eCCCchhHHHHHHHHHHHHhhhCCCCCEEEEeeCCcccCCcccc--cCCCCCCcccHHHHHHHHHHhCCCceEEeccCCC
Q 036449           86 SLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLRDDKQFF--IDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQ  163 (197)
Q Consensus        86 d~~~~~s~~~~~~~~~~~i~~~~~~~~~ivv~nK~D~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~  163 (197)
                      |++++++|+.+...|+..+....++.|+++|+||+|+.+.....  ......+.++.++++.+++.++..+|++|||++|
T Consensus        81 d~~~~~sf~~~~~~~~~~~~~~~~~~piilvgnK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~  160 (174)
T cd01871          81 SLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQ  160 (174)
T ss_pred             ECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEeeChhhccChhhHHHHhhccCCCCCHHHHHHHHHHcCCcEEEEeccccc
Confidence            99999999998667888887777889999999999996432100  1111234578899999999998668999999999


Q ss_pred             CCHHHHHHHHHHH
Q 036449          164 QNVKAVFDAAIRV  176 (197)
Q Consensus       164 ~~i~~l~~~i~~~  176 (197)
                      .|++++|+.+++.
T Consensus       161 ~~i~~~f~~l~~~  173 (174)
T cd01871         161 KGLKTVFDEAIRA  173 (174)
T ss_pred             CCHHHHHHHHHHh
Confidence            9999999999874

The Rac1-like subfamily consists of Rac1, Rac2, and Rac3 proteins, plus the splice variant Rac1b that contains a 19-residue insertion near switch II relative to Rac1. While Rac1 is ubiquitously expressed, Rac2 and Rac3 are largely restricted to hematopoietic and neural tissues respectively. Rac1 stimulates the formation of actin lamellipodia and membrane ruffles. It also plays a role in cell-matrix adhesion and cell anoikis. In intestinal epithelial cells, Rac1 is an important regulator of migration and mediates apoptosis. Rac1 is also essential for RhoA-regulated actin stress fiber and focal adhesion complex formation. In leukocytes, Rac1 and Rac2 have distinct roles in regulating cell morphology, migration, and invasion, but are not essential for macrophage migration or chemotaxis. Rac3 has biochemical properties that are closely related to Rac1, such as effector interaction, nucleotide binding, and hydrolysis; Rac2 has a slower nucleoti

>KOG0394 consensus Ras-related GTPase [General function prediction only]

Probab=100.00  E-value=1.9e-37  Score=206.11  Aligned_cols=170  Identities=32%  Similarity=0.587  Sum_probs=154.2

Q ss_pred             CceeEEEEEcCCCCCHHHHHHHHhhCCCCCCCCCceeeee-eEEEEECCeEEEEEEEeCCCccccccccccCcCCCcEEE
Q 036449            4 SRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNF-SANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFI   82 (197)
Q Consensus         4 ~~~~~i~v~G~~~~GKstli~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i   82 (197)
                      ...+||.++|.+|+|||||++++..++|...+..|++..+ .+.+.++++.+.+++|||+||++|.++.-.+++++|.++
T Consensus         7 ~~lLKViiLGDsGVGKtSLmn~yv~~kF~~qykaTIgadFltKev~Vd~~~vtlQiWDTAGQERFqsLg~aFYRgaDcCv   86 (210)
T KOG0394|consen    7 RTLLKVIILGDSGVGKTSLMNQYVNKKFSQQYKATIGADFLTKEVQVDDRSVTLQIWDTAGQERFQSLGVAFYRGADCCV   86 (210)
T ss_pred             ccceEEEEeCCCCccHHHHHHHHHHHHHHHHhccccchhheeeEEEEcCeEEEEEEEecccHHHhhhcccceecCCceEE
Confidence            3459999999999999999999999999999999997554 778899999999999999999999999999999999999


Q ss_pred             EEEeCCCchhHHHHHHHHHHHHhhhC-C----CCCEEEEeeCCcccCCcccccCCCCCCcccHHHHHHHHHHhCCCceEE
Q 036449           83 LAFSLISKASYENVSKKWIPELKHYA-P----GVPIILVGTKLDLRDDKQFFIDHPGAVPISTAQGEELRKLIGAPAYIE  157 (197)
Q Consensus        83 ~v~d~~~~~s~~~~~~~~~~~i~~~~-~----~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  157 (197)
                      +|||++++++|+.+ ..|.+.+-.+. |    .-|+||+|||.|+....        .+.++...++.++...|..||||
T Consensus        87 lvydv~~~~Sfe~L-~~Wr~EFl~qa~~~~Pe~FPFVilGNKiD~~~~~--------~r~VS~~~Aq~WC~s~gnipyfE  157 (210)
T KOG0394|consen   87 LVYDVNNPKSFENL-ENWRKEFLIQASPQDPETFPFVILGNKIDVDGGK--------SRQVSEKKAQTWCKSKGNIPYFE  157 (210)
T ss_pred             EEeecCChhhhccH-HHHHHHHHHhcCCCCCCcccEEEEcccccCCCCc--------cceeeHHHHHHHHHhcCCceeEE
Confidence            99999999999999 89988887766 3    57999999999997632        24589999999999999889999


Q ss_pred             eccCCCCCHHHHHHHHHHHHcCCCc
Q 036449          158 CSSKTQQNVKAVFDAAIRVVLQPPK  182 (197)
Q Consensus       158 ~sa~~~~~i~~l~~~i~~~~~~~~~  182 (197)
                      +|||...||++.|..+.+.++....
T Consensus       158 tSAK~~~NV~~AFe~ia~~aL~~E~  182 (210)
T KOG0394|consen  158 TSAKEATNVDEAFEEIARRALANED  182 (210)
T ss_pred             ecccccccHHHHHHHHHHHHHhccc
Confidence            9999999999999999998887754

>KOG0079 consensus GTP-binding protein H-ray, small G protein superfamily [General function prediction only]

Probab=100.00  E-value=1.5e-37  Score=199.54  Aligned_cols=162  Identities=33%  Similarity=0.633  Sum_probs=151.1

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhhCCCCCCCCCceeeee-eEEEEECCeEEEEEEEeCCCccccccccccCcCCCcEEEEEE
Q 036449            7 IKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNF-SANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAF   85 (197)
Q Consensus         7 ~~i~v~G~~~~GKstli~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~   85 (197)
                      ++.+++|.+|+|||+|+.+|..+.|+..|..|++-.+ ..++.++|..+.++|||++|+++|+.+...+++..+++++||
T Consensus         9 fkllIigDsgVGKssLl~rF~ddtFs~sYitTiGvDfkirTv~i~G~~VkLqIwDtAGqErFrtitstyyrgthgv~vVY   88 (198)
T KOG0079|consen    9 FKLLIIGDSGVGKSSLLLRFADDTFSGSYITTIGVDFKIRTVDINGDRVKLQIWDTAGQERFRTITSTYYRGTHGVIVVY   88 (198)
T ss_pred             HHHHeecCCcccHHHHHHHHhhcccccceEEEeeeeEEEEEeecCCcEEEEEEeecccHHHHHHHHHHHccCCceEEEEE
Confidence            5678999999999999999999999999999997555 567888999999999999999999999999999999999999


Q ss_pred             eCCCchhHHHHHHHHHHHHhhhCCCCCEEEEeeCCcccCCcccccCCCCCCcccHHHHHHHHHHhCCCceEEeccCCCCC
Q 036449           86 SLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQQN  165 (197)
Q Consensus        86 d~~~~~s~~~~~~~~~~~i~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~  165 (197)
                      |+++.+||... ..|++.++..++..|-++||||.|..+.+.          +..++++.|+...+. .+||+|+++..|
T Consensus        89 DVTn~ESF~Nv-~rWLeei~~ncdsv~~vLVGNK~d~~~Rrv----------V~t~dAr~~A~~mgi-e~FETSaKe~~N  156 (198)
T KOG0079|consen   89 DVTNGESFNNV-KRWLEEIRNNCDSVPKVLVGNKNDDPERRV----------VDTEDARAFALQMGI-ELFETSAKENEN  156 (198)
T ss_pred             ECcchhhhHhH-HHHHHHHHhcCccccceecccCCCCcccee----------eehHHHHHHHHhcCc-hheehhhhhccc
Confidence            99999999999 899999999999999999999999977654          889999999999999 899999999999


Q ss_pred             HHHHHHHHHHHHcCC
Q 036449          166 VKAVFDAAIRVVLQP  180 (197)
Q Consensus       166 i~~l~~~i~~~~~~~  180 (197)
                      ++..|.-|.+++.+.
T Consensus       157 vE~mF~cit~qvl~~  171 (198)
T KOG0079|consen  157 VEAMFHCITKQVLQA  171 (198)
T ss_pred             chHHHHHHHHHHHHH
Confidence            999999999876654

>smart00174 RHO Rho (Ras homology) subfamily of Ras-like small GTPases

Probab=100.00  E-value=1.1e-35  Score=206.73  Aligned_cols=171  Identities=63%  Similarity=1.066  Sum_probs=148.0

Q ss_pred             EEEEcCCCCCHHHHHHHHhhCCCCCCCCCceeeeeeEEEEECCeEEEEEEEeCCCccccccccccCcCCCcEEEEEEeCC
Q 036449            9 CVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLI   88 (197)
Q Consensus         9 i~v~G~~~~GKstli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~   88 (197)
                      |+++|.+|||||||++++..+.+...+.++....+...+.+++..+.+++|||||++.+..++..++.++|++|+|||++
T Consensus         1 i~i~G~~~vGKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~d~~   80 (174)
T smart00174        1 LVVVGDGAVGKTCLLISYTTNAFPEDYVPTVFENYSADVEVDGKPVELGLWDTAGQEDYDRLRPLSYPDTDVFLICFSVD   80 (174)
T ss_pred             CEEECCCCCCHHHHHHHHHhCCCCCCCCCcEEeeeeEEEEECCEEEEEEEEECCCCcccchhchhhcCCCCEEEEEEECC
Confidence            68999999999999999999999888888887777777788888899999999999999999999999999999999999


Q ss_pred             CchhHHHHHHHHHHHHhhhCCCCCEEEEeeCCcccCCcccc--cCCCCCCcccHHHHHHHHHHhCCCceEEeccCCCCCH
Q 036449           89 SKASYENVSKKWIPELKHYAPGVPIILVGTKLDLRDDKQFF--IDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQQNV  166 (197)
Q Consensus        89 ~~~s~~~~~~~~~~~i~~~~~~~~~ivv~nK~D~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i  166 (197)
                      ++++++.+...|+..+....++.|+++|+||+|+.......  ........++.+++..+++..+..+++++||+++.|+
T Consensus        81 ~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~~~v  160 (174)
T smart00174       81 SPASFENVKEKWYPEVKHFCPNTPIILVGTKLDLREDKSTLRELSKQKQEPVTYEQGEALAKRIGAVKYLECSALTQEGV  160 (174)
T ss_pred             CHHHHHHHHHHHHHHHHhhCCCCCEEEEecChhhhhChhhhhhhhcccCCCccHHHHHHHHHHcCCcEEEEecCCCCCCH
Confidence            99999998667999998887899999999999997532111  1112223467788899999998768999999999999


Q ss_pred             HHHHHHHHHHHcC
Q 036449          167 KAVFDAAIRVVLQ  179 (197)
Q Consensus       167 ~~l~~~i~~~~~~  179 (197)
                      +++|+.+++.+.+
T Consensus       161 ~~lf~~l~~~~~~  173 (174)
T smart00174      161 REVFEEAIRAALN  173 (174)
T ss_pred             HHHHHHHHHHhcC
Confidence            9999999988754

Members of this subfamily of Ras-like small GTPases include Cdc42 and Rac, as well as Rho isoforms.

>cd04122 Rab14 Rab14 subfamily

Probab=100.00  E-value=7.7e-36  Score=205.97  Aligned_cols=162  Identities=30%  Similarity=0.620  Sum_probs=142.6

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHhhCCCCCCCCCceeeee-eEEEEECCeEEEEEEEeCCCccccccccccCcCCCcEEEEE
Q 036449            6 FIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNF-SANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILA   84 (197)
Q Consensus         6 ~~~i~v~G~~~~GKstli~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v   84 (197)
                      .+||+++|++|||||||++++..+.+...+.++.+..+ ...+.+++..+.+.+||+||++.+...+..+++++|++|+|
T Consensus         2 ~~ki~iiG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv   81 (166)
T cd04122           2 IFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVNGQKIKLQIWDTAGQERFRAVTRSYYRGAAGALMV   81 (166)
T ss_pred             ceEEEEECCCCCCHHHHHHHHhcCCCCCCCCcccceeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhcCCCEEEEE
Confidence            47999999999999999999999999888888876555 34566788889999999999999999999999999999999


Q ss_pred             EeCCCchhHHHHHHHHHHHHhhhC-CCCCEEEEeeCCcccCCcccccCCCCCCcccHHHHHHHHHHhCCCceEEeccCCC
Q 036449           85 FSLISKASYENVSKKWIPELKHYA-PGVPIILVGTKLDLRDDKQFFIDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQ  163 (197)
Q Consensus        85 ~d~~~~~s~~~~~~~~~~~i~~~~-~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~  163 (197)
                      ||++++++++.+ ..|+..+.... ++.|+++|+||+|+.....          ++.+++..+++..+. +++++||++|
T Consensus        82 ~d~~~~~s~~~~-~~~~~~~~~~~~~~~~iiiv~nK~Dl~~~~~----------~~~~~~~~~~~~~~~-~~~e~Sa~~~  149 (166)
T cd04122          82 YDITRRSTYNHL-SSWLTDARNLTNPNTVIFLIGNKADLEAQRD----------VTYEEAKQFADENGL-LFLECSAKTG  149 (166)
T ss_pred             EECCCHHHHHHH-HHHHHHHHHhCCCCCeEEEEEECcccccccC----------cCHHHHHHHHHHcCC-EEEEEECCCC
Confidence            999999999998 78888776654 6899999999999976543          677888899998887 8999999999


Q ss_pred             CCHHHHHHHHHHHHcC
Q 036449          164 QNVKAVFDAAIRVVLQ  179 (197)
Q Consensus       164 ~~i~~l~~~i~~~~~~  179 (197)
                      .|++++|.++++.+.+
T Consensus       150 ~~i~e~f~~l~~~~~~  165 (166)
T cd04122         150 ENVEDAFLETAKKIYQ  165 (166)
T ss_pred             CCHHHHHHHHHHHHhh
Confidence            9999999999988754

Rab14 GTPases are localized to biosynthetic compartments, including the rough ER, the Golgi complex, and the trans-Golgi network, and to endosomal compartments, including early endosomal vacuoles and associated vesicles. Rab14 is believed to function in both the biosynthetic and recycling pathways between the Golgi and endosomal compartments. Rab14 has also been identified on GLUT4 vesicles, and has been suggested to help regulate GLUT4 translocation. In addition, Rab14 is believed to play a role in the regulation of phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GT

>cd04107 Rab32_Rab38 Rab38/Rab32 subfamily

Probab=100.00  E-value=9.1e-36  Score=211.54  Aligned_cols=164  Identities=27%  Similarity=0.468  Sum_probs=142.8

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhhCCCCCCCCCceeeee-eEEEEEC-CeEEEEEEEeCCCccccccccccCcCCCcEEEEE
Q 036449            7 IKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNF-SANVVVN-GSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILA   84 (197)
Q Consensus         7 ~~i~v~G~~~~GKstli~~~~~~~~~~~~~~~~~~~~-~~~~~~~-~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v   84 (197)
                      +||+++|.+|||||||+++|..+.+...+.+|.+..+ ...+.++ +..+.+.+||+||++.|..++..++++++++|+|
T Consensus         1 ~KivivG~~~vGKTsli~~l~~~~~~~~~~~t~~~d~~~~~v~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~a~~~ilv   80 (201)
T cd04107           1 LKVLVIGDLGVGKTSIIKRYVHGIFSQHYKATIGVDFALKVIEWDPNTVVRLQLWDIAGQERFGGMTRVYYRGAVGAIIV   80 (201)
T ss_pred             CEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeEEEEEEEEEECCCCEEEEEEEECCCchhhhhhHHHHhCCCCEEEEE
Confidence            5899999999999999999999999888888886544 4456666 7789999999999999999999999999999999


Q ss_pred             EeCCCchhHHHHHHHHHHHHhhhC-----CCCCEEEEeeCCcccCCcccccCCCCCCcccHHHHHHHHHHhCCCceEEec
Q 036449           85 FSLISKASYENVSKKWIPELKHYA-----PGVPIILVGTKLDLRDDKQFFIDHPGAVPISTAQGEELRKLIGAPAYIECS  159 (197)
Q Consensus        85 ~d~~~~~s~~~~~~~~~~~i~~~~-----~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s  159 (197)
                      ||++++++++.+ ..|+..+....     .++|+++|+||+|+.+.+.          +..+++.++++..+..+++++|
T Consensus        81 ~D~t~~~s~~~~-~~~~~~i~~~~~~~~~~~~piilv~NK~Dl~~~~~----------~~~~~~~~~~~~~~~~~~~e~S  149 (201)
T cd04107          81 FDVTRPSTFEAV-LKWKADLDSKVTLPNGEPIPCLLLANKCDLKKRLA----------KDGEQMDQFCKENGFIGWFETS  149 (201)
T ss_pred             EECCCHHHHHHH-HHHHHHHHHhhcccCCCCCcEEEEEECCCcccccc----------cCHHHHHHHHHHcCCceEEEEe
Confidence            999999999999 78888776532     4789999999999975332          6678889999999855899999


Q ss_pred             cCCCCCHHHHHHHHHHHHcCCC
Q 036449          160 SKTQQNVKAVFDAAIRVVLQPP  181 (197)
Q Consensus       160 a~~~~~i~~l~~~i~~~~~~~~  181 (197)
                      |++|.|++++|++|++.+....
T Consensus       150 ak~~~~v~e~f~~l~~~l~~~~  171 (201)
T cd04107         150 AKEGINIEEAMRFLVKNILAND  171 (201)
T ss_pred             CCCCCCHHHHHHHHHHHHHHhc
Confidence            9999999999999999887754

Rab32 and Rab38 are members of the Rab family of small GTPases. Human Rab32 was first identified in platelets but it is expressed in a variety of cell types, where it functions as an A-kinase anchoring protein (AKAP). Rab38 has been shown to be melanocyte-specific. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.

>cd04136 Rap_like Rap-like subfamily

Probab=100.00  E-value=9.6e-36  Score=204.81  Aligned_cols=159  Identities=31%  Similarity=0.603  Sum_probs=140.4

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhhCCCCCCCCCceeeeeeEEEEECCeEEEEEEEeCCCccccccccccCcCCCcEEEEEEe
Q 036449            7 IKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFS   86 (197)
Q Consensus         7 ~~i~v~G~~~~GKstli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d   86 (197)
                      +||+++|.+|||||||++++..+.+...+.+|....+...+.+++..+.+++||+||+++|..++..+++++|++++|||
T Consensus         2 ~ki~i~G~~~vGKTsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~d   81 (163)
T cd04136           2 YKVVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQIEVDGQQCMLEILDTAGTEQFTAMRDLYIKNGQGFVLVYS   81 (163)
T ss_pred             eEEEEECCCCCCHHHHHHHHHhCCCCcccCCchhhhEEEEEEECCEEEEEEEEECCCccccchHHHHHhhcCCEEEEEEE
Confidence            79999999999999999999999998888888877777777888888999999999999999999999999999999999


Q ss_pred             CCCchhHHHHHHHHHHHHhhhC--CCCCEEEEeeCCcccCCcccccCCCCCCcccHHHHHHHHHHhCCCceEEeccCCCC
Q 036449           87 LISKASYENVSKKWIPELKHYA--PGVPIILVGTKLDLRDDKQFFIDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQQ  164 (197)
Q Consensus        87 ~~~~~s~~~~~~~~~~~i~~~~--~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~  164 (197)
                      ++++++++.+ ..|...+....  ++.|+++|+||+|+.+.+.          +..+++..+++.++. +++++||+++.
T Consensus        82 ~~~~~s~~~~-~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~----------~~~~~~~~~~~~~~~-~~~~~Sa~~~~  149 (163)
T cd04136          82 ITSQSSFNDL-QDLREQILRVKDTENVPMVLVGNKCDLEDERV----------VSREEGQALARQWGC-PFYETSAKSKI  149 (163)
T ss_pred             CCCHHHHHHH-HHHHHHHHHhcCCCCCCEEEEEECccccccce----------ecHHHHHHHHHHcCC-eEEEecCCCCC
Confidence            9999999988 67877776543  5899999999999976443          556677788888885 89999999999


Q ss_pred             CHHHHHHHHHHHH
Q 036449          165 NVKAVFDAAIRVV  177 (197)
Q Consensus       165 ~i~~l~~~i~~~~  177 (197)
                      |++++|+++++.+
T Consensus       150 ~v~~l~~~l~~~~  162 (163)
T cd04136         150 NVDEVFADLVRQI  162 (163)
T ss_pred             CHHHHHHHHHHhc
Confidence            9999999998765

The Rap subfamily consists of the Rap1, Rap2, and RSR1. Rap subfamily proteins perform different cellular functions, depending on the isoform and its subcellular localization. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and microsomal membrane of the pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. Rap1 localizes in the nucleus of human oropharyngeal squamous cell carcinomas (SCCs) and cell lines. Rap1 plays a role in phagocytosis by controlling the binding of adhesion receptors (typically integrins) to their ligands. In yeast, Rap1 has been implicated in multiple functions, including activation and silencing of transcription and maintenance of telomeres.

>cd04109 Rab28 Rab28 subfamily

Probab=100.00  E-value=9.6e-36  Score=213.33  Aligned_cols=161  Identities=28%  Similarity=0.455  Sum_probs=140.5

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhhCCCCCCCCCcee-eeeeEEEEECC-eEEEEEEEeCCCccccccccccCcCCCcEEEEE
Q 036449            7 IKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVF-DNFSANVVVNG-STVNLGLWDTAGQEDYNRLRPLSYRGADVFILA   84 (197)
Q Consensus         7 ~~i~v~G~~~~GKstli~~~~~~~~~~~~~~~~~-~~~~~~~~~~~-~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v   84 (197)
                      +||+++|.+|||||||+++|..+.+...+.+|.+ +.+...+.+++ ..+.+++||+||++.+..++..+++++|++|+|
T Consensus         1 ~Ki~ivG~~~vGKSsLi~~l~~~~~~~~~~~T~~~d~~~~~i~~~~~~~~~~~i~Dt~G~~~~~~l~~~~~~~ad~iilV   80 (215)
T cd04109           1 FKIVVLGDGAVGKTSLCRRFAKEGFGKSYKQTIGLDFFSKRVTLPGNLNVTLQVWDIGGQSIGGKMLDKYIYGAHAVFLV   80 (215)
T ss_pred             CEEEEECcCCCCHHHHHHHHhcCCCCCCCCCceeEEEEEEEEEeCCCCEEEEEEEECCCcHHHHHHHHHHhhcCCEEEEE
Confidence            5899999999999999999999999888888886 44455566654 578999999999999999999999999999999


Q ss_pred             EeCCCchhHHHHHHHHHHHHhhhC----CCCCEEEEeeCCcccCCcccccCCCCCCcccHHHHHHHHHHhCCCceEEecc
Q 036449           85 FSLISKASYENVSKKWIPELKHYA----PGVPIILVGTKLDLRDDKQFFIDHPGAVPISTAQGEELRKLIGAPAYIECSS  160 (197)
Q Consensus        85 ~d~~~~~s~~~~~~~~~~~i~~~~----~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa  160 (197)
                      ||++++++++.+ ..|+..+....    .+.|+++|+||+|+.+.+.          +..+++..+++.++. +++++||
T Consensus        81 ~D~t~~~s~~~~-~~w~~~l~~~~~~~~~~~piilVgNK~DL~~~~~----------v~~~~~~~~~~~~~~-~~~~iSA  148 (215)
T cd04109          81 YDVTNSQSFENL-EDWYSMVRKVLKSSETQPLVVLVGNKTDLEHNRT----------VKDDKHARFAQANGM-ESCLVSA  148 (215)
T ss_pred             EECCCHHHHHHH-HHHHHHHHHhccccCCCceEEEEEECcccccccc----------cCHHHHHHHHHHcCC-EEEEEEC
Confidence            999999999998 78988887764    2468999999999975443          677788899998887 8999999


Q ss_pred             CCCCCHHHHHHHHHHHHcC
Q 036449          161 KTQQNVKAVFDAAIRVVLQ  179 (197)
Q Consensus       161 ~~~~~i~~l~~~i~~~~~~  179 (197)
                      ++|.|++++|+++++.+..
T Consensus       149 ktg~gv~~lf~~l~~~l~~  167 (215)
T cd04109         149 KTGDRVNLLFQQLAAELLG  167 (215)
T ss_pred             CCCCCHHHHHHHHHHHHHh
Confidence            9999999999999998865

First identified in maize, Rab28 has been shown to be a late embryogenesis-abundant (Lea) protein that is regulated by the plant hormone abcisic acid (ABA). In Arabidopsis, Rab28 is expressed during embryo development and is generally restricted to provascular tissues in mature embryos. Unlike maize Rab28, it is not ABA-inducible. Characterization of the human Rab28 homolog revealed two isoforms, which differ by a 95-base pair insertion, producing an alternative sequence for the 30 amino acids at the C-terminus. The two human isoforms are presumbly the result of alternative splicing. Since they differ at the C-terminus but not in the GTP-binding region, they are predicted to be targeted to different cellular locations. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs

>KOG0087 consensus GTPase Rab11/YPT3, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=3.1e-36  Score=204.86  Aligned_cols=166  Identities=33%  Similarity=0.576  Sum_probs=153.7

Q ss_pred             CceeEEEEEcCCCCCHHHHHHHHhhCCCCCCCCCceeeee-eEEEEECCeEEEEEEEeCCCccccccccccCcCCCcEEE
Q 036449            4 SRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNF-SANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFI   82 (197)
Q Consensus         4 ~~~~~i~v~G~~~~GKstli~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i   82 (197)
                      ..-+||+++|.+++|||-|+.+|..+.|..+..+|++-.+ +....++++.+..+||||+||++|+.....+++.+.+++
T Consensus        12 dylFKiVliGDS~VGKsnLlsRftrnEF~~~SksTIGvef~t~t~~vd~k~vkaqIWDTAGQERyrAitSaYYrgAvGAl   91 (222)
T KOG0087|consen   12 DYLFKIVLIGDSAVGKSNLLSRFTRNEFSLESKSTIGVEFATRTVNVDGKTVKAQIWDTAGQERYRAITSAYYRGAVGAL   91 (222)
T ss_pred             ceEEEEEEeCCCccchhHHHHHhcccccCcccccceeEEEEeeceeecCcEEEEeeecccchhhhccccchhhcccceeE
Confidence            3558999999999999999999999999999999997555 677889999999999999999999999999999999999


Q ss_pred             EEEeCCCchhHHHHHHHHHHHHhhhC-CCCCEEEEeeCCcccCCcccccCCCCCCcccHHHHHHHHHHhCCCceEEeccC
Q 036449           83 LAFSLISKASYENVSKKWIPELKHYA-PGVPIILVGTKLDLRDDKQFFIDHPGAVPISTAQGEELRKLIGAPAYIECSSK  161 (197)
Q Consensus        83 ~v~d~~~~~s~~~~~~~~~~~i~~~~-~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~  161 (197)
                      +|||+++..+|+.+ ..|+..++.+. +++++++||||+||.+.+.          +..++++.++...+. .|+++||.
T Consensus        92 lVYDITr~~Tfenv-~rWL~ELRdhad~nivimLvGNK~DL~~lra----------V~te~~k~~Ae~~~l-~f~EtSAl  159 (222)
T KOG0087|consen   92 LVYDITRRQTFENV-ERWLKELRDHADSNIVIMLVGNKSDLNHLRA----------VPTEDGKAFAEKEGL-FFLETSAL  159 (222)
T ss_pred             EEEechhHHHHHHH-HHHHHHHHhcCCCCeEEEEeecchhhhhccc----------cchhhhHhHHHhcCc-eEEEeccc
Confidence            99999999999998 89999999998 8999999999999987554          889999999999998 89999999


Q ss_pred             CCCCHHHHHHHHHHHHcCCC
Q 036449          162 TQQNVKAVFDAAIRVVLQPP  181 (197)
Q Consensus       162 ~~~~i~~l~~~i~~~~~~~~  181 (197)
                      +..|+++.|..++..++..-
T Consensus       160 ~~tNVe~aF~~~l~~I~~~v  179 (222)
T KOG0087|consen  160 DATNVEKAFERVLTEIYKIV  179 (222)
T ss_pred             ccccHHHHHHHHHHHHHHHH
Confidence            99999999999998877653

>cd04125 RabA_like RabA-like subfamily

Probab=100.00  E-value=1.5e-35  Score=208.42  Aligned_cols=178  Identities=29%  Similarity=0.544  Sum_probs=150.6

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhhCCCCCCCCCceeeee-eEEEEECCeEEEEEEEeCCCccccccccccCcCCCcEEEEEE
Q 036449            7 IKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNF-SANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAF   85 (197)
Q Consensus         7 ~~i~v~G~~~~GKstli~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~   85 (197)
                      +||+++|.+|||||||++++..+.+...+.++.+..+ ...+.+++..+.+++||+||++.+...+..++.++|++|+||
T Consensus         1 ~ki~v~G~~~vGKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~g~~~~~~~~~~~~~~~d~iilv~   80 (188)
T cd04125           1 FKVVIIGDYGVGKSSLLKRFTEDEFSESTKSTIGVDFKIKTVYIENKIIKLQIWDTNGQERFRSLNNSYYRGAHGYLLVY   80 (188)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCCcHHHHhhHHHHccCCCEEEEEE
Confidence            5899999999999999999999999877778876544 455667787889999999999999999999999999999999


Q ss_pred             eCCCchhHHHHHHHHHHHHhhhC-CCCCEEEEeeCCcccCCcccccCCCCCCcccHHHHHHHHHHhCCCceEEeccCCCC
Q 036449           86 SLISKASYENVSKKWIPELKHYA-PGVPIILVGTKLDLRDDKQFFIDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQQ  164 (197)
Q Consensus        86 d~~~~~s~~~~~~~~~~~i~~~~-~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~  164 (197)
                      |++++++++.+ ..|+..+.... ++.|+++++||+|+.+...          ++.+++..+++..+. +++++||+++.
T Consensus        81 d~~~~~s~~~i-~~~~~~i~~~~~~~~~~ivv~nK~Dl~~~~~----------v~~~~~~~~~~~~~~-~~~evSa~~~~  148 (188)
T cd04125          81 DVTDQESFENL-KFWINEINRYARENVIKVIVANKSDLVNNKV----------VDSNIAKSFCDSLNI-PFFETSAKQSI  148 (188)
T ss_pred             ECcCHHHHHHH-HHHHHHHHHhCCCCCeEEEEEECCCCccccc----------CCHHHHHHHHHHcCC-eEEEEeCCCCC
Confidence            99999999999 67998888765 4789999999999975443          567788888888888 89999999999


Q ss_pred             CHHHHHHHHHHHHcCCCchh-------hhhhcccccccc
Q 036449          165 NVKAVFDAAIRVVLQPPKTK-------KKKNKAQKACSI  196 (197)
Q Consensus       165 ~i~~l~~~i~~~~~~~~~~~-------~~~~~~~~~c~~  196 (197)
                      |++++|.++++.+..+....       ..+.+++..|+|
T Consensus       149 ~i~~~f~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  187 (188)
T cd04125         149 NVEEAFILLVKLIIKRLEEQELSPKNIKQQFKKKNNCFI  187 (188)
T ss_pred             CHHHHHHHHHHHHHHHhhcCcCCccccccccccccCccc
Confidence            99999999999887653322       245566677765

RabA was first identified in D. discoideum, where its expression levels were compared to other Rabs in growing and developing cells. The RabA mRNA levels were below the level of detection by Northern blot analysis, suggesting a very low level of expression. The function of RabA remains unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.

>cd04175 Rap1 Rap1 subgroup

Probab=100.00  E-value=1.8e-35  Score=203.71  Aligned_cols=161  Identities=30%  Similarity=0.583  Sum_probs=141.1

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHhhCCCCCCCCCceeeeeeEEEEECCeEEEEEEEeCCCccccccccccCcCCCcEEEEEE
Q 036449            6 FIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAF   85 (197)
Q Consensus         6 ~~~i~v~G~~~~GKstli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~   85 (197)
                      .+||+++|.+|||||||++++..+.+...+.+|.+..+...+.+++..+.+++||+||++.+..++..+++++|++++||
T Consensus         1 ~~ki~~~G~~~~GKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~   80 (164)
T cd04175           1 EYKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDGQQCMLEILDTAGTEQFTAMRDLYMKNGQGFVLVY   80 (164)
T ss_pred             CcEEEEECCCCCCHHHHHHHHHhCCCCcccCCcchheEEEEEEECCEEEEEEEEECCCcccchhHHHHHHhhCCEEEEEE
Confidence            37999999999999999999999988888888888777777788888899999999999999999999999999999999


Q ss_pred             eCCCchhHHHHHHHHHHHHhhhC--CCCCEEEEeeCCcccCCcccccCCCCCCcccHHHHHHHHHHhCCCceEEeccCCC
Q 036449           86 SLISKASYENVSKKWIPELKHYA--PGVPIILVGTKLDLRDDKQFFIDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQ  163 (197)
Q Consensus        86 d~~~~~s~~~~~~~~~~~i~~~~--~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~  163 (197)
                      |++++++++.+ ..|...+....  ++.|+++|+||+|+.+...          ...+++..+++..+. +++++||+++
T Consensus        81 d~~~~~s~~~~-~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~----------~~~~~~~~~~~~~~~-~~~~~Sa~~~  148 (164)
T cd04175          81 SITAQSTFNDL-QDLREQILRVKDTEDVPMILVGNKCDLEDERV----------VGKEQGQNLARQWGC-AFLETSAKAK  148 (164)
T ss_pred             ECCCHHHHHHH-HHHHHHHHHhcCCCCCCEEEEEECCcchhccE----------EcHHHHHHHHHHhCC-EEEEeeCCCC
Confidence            99999999998 66777665433  6899999999999976443          556667788888887 8999999999


Q ss_pred             CCHHHHHHHHHHHHc
Q 036449          164 QNVKAVFDAAIRVVL  178 (197)
Q Consensus       164 ~~i~~l~~~i~~~~~  178 (197)
                      .|++++|.++++.+.
T Consensus       149 ~~v~~~~~~l~~~l~  163 (164)
T cd04175         149 INVNEIFYDLVRQIN  163 (164)
T ss_pred             CCHHHHHHHHHHHhh
Confidence            999999999998763

The Rap1 subgroup is part of the Rap subfamily of the Ras family. It can be further divided into the Rap1a and Rap1b isoforms. In humans, Rap1a and Rap1b share 95% sequence homology, but are products of two different genes located on chromosomes 1 and 12, respectively. Rap1a is sometimes called smg p21 or Krev1 in the older literature. Rap1 proteins are believed to perform different cellular functions, depending on the isoform, its subcellular localization, and the effector proteins it binds. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and the microsomal membrane of pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. High expression of Rap1 has been observed in the n

>KOG0093 consensus GTPase Rab3, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=3.1e-36  Score=193.28  Aligned_cols=166  Identities=33%  Similarity=0.649  Sum_probs=151.2

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHhhCCCCCCCCCceeeeeeEE-EEECCeEEEEEEEeCCCccccccccccCcCCCcEEEEE
Q 036449            6 FIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSAN-VVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILA   84 (197)
Q Consensus         6 ~~~i~v~G~~~~GKstli~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v   84 (197)
                      ..|++++|.+.+||||++.++....|...+..|.+..+... +.-..+.+.+++|||.|+++|+.....++++++++|++
T Consensus        21 mfKlliiGnssvGKTSfl~ry~ddSFt~afvsTvGidFKvKTvyr~~kRiklQiwDTagqEryrtiTTayyRgamgfiLm  100 (193)
T KOG0093|consen   21 MFKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVYRSDKRIKLQIWDTAGQERYRTITTAYYRGAMGFILM  100 (193)
T ss_pred             eeeEEEEccCCccchhhhHHhhccccccceeeeeeeeEEEeEeeecccEEEEEEEecccchhhhHHHHHHhhccceEEEE
Confidence            47999999999999999999999999999999998777554 44455779999999999999999999999999999999


Q ss_pred             EeCCCchhHHHHHHHHHHHHhhhC-CCCCEEEEeeCCcccCCcccccCCCCCCcccHHHHHHHHHHhCCCceEEeccCCC
Q 036449           85 FSLISKASYENVSKKWIPELKHYA-PGVPIILVGTKLDLRDDKQFFIDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQ  163 (197)
Q Consensus        85 ~d~~~~~s~~~~~~~~~~~i~~~~-~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~  163 (197)
                      ||++|.+||..+ +.|...|+... .+.|+|+|+||||+..++.          ++.+.++.+++++|. .|||+||+.+
T Consensus       101 yDitNeeSf~sv-qdw~tqIktysw~naqvilvgnKCDmd~eRv----------is~e~g~~l~~~LGf-efFEtSaK~N  168 (193)
T KOG0093|consen  101 YDITNEESFNSV-QDWITQIKTYSWDNAQVILVGNKCDMDSERV----------ISHERGRQLADQLGF-EFFETSAKEN  168 (193)
T ss_pred             EecCCHHHHHHH-HHHHHHheeeeccCceEEEEecccCCcccee----------eeHHHHHHHHHHhCh-HHhhhccccc
Confidence            999999999999 89999999887 7999999999999988876          889999999999999 9999999999


Q ss_pred             CCHHHHHHHHHHHHcCCCch
Q 036449          164 QNVKAVFDAAIRVVLQPPKT  183 (197)
Q Consensus       164 ~~i~~l~~~i~~~~~~~~~~  183 (197)
                      .|++++|+.++..+-+.+..
T Consensus       169 inVk~~Fe~lv~~Ic~kmse  188 (193)
T KOG0093|consen  169 INVKQVFERLVDIICDKMSE  188 (193)
T ss_pred             ccHHHHHHHHHHHHHHHhhh
Confidence            99999999999888766443

>cd04130 Wrch_1 Wrch-1 subfamily

Probab=100.00  E-value=6.3e-35  Score=202.69  Aligned_cols=169  Identities=54%  Similarity=0.959  Sum_probs=145.2

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhhCCCCCCCCCceeeeeeEEEEECCeEEEEEEEeCCCccccccccccCcCCCcEEEEEEe
Q 036449            7 IKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFS   86 (197)
Q Consensus         7 ~~i~v~G~~~~GKstli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d   86 (197)
                      +||+++|++|+|||||+.++..+.+..++.+|..+.+...+.+++..+.+++||+||++.+..++..+++++|++|+|||
T Consensus         1 ~k~~i~G~~~~GKtsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~a~~~i~v~d   80 (173)
T cd04130           1 LKCVLVGDGAVGKTSLIVSYTTNGYPTEYVPTAFDNFSVVVLVDGKPVRLQLCDTAGQDEFDKLRPLCYPDTDVFLLCFS   80 (173)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeeeEEEEECCEEEEEEEEECCCChhhccccccccCCCcEEEEEEE
Confidence            68999999999999999999999999999998877777778888888999999999999999999999999999999999


Q ss_pred             CCCchhHHHHHHHHHHHHhhhCCCCCEEEEeeCCcccCCcccc--cCCCCCCcccHHHHHHHHHHhCCCceEEeccCCCC
Q 036449           87 LISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLRDDKQFF--IDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQQ  164 (197)
Q Consensus        87 ~~~~~s~~~~~~~~~~~i~~~~~~~~~ivv~nK~D~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~  164 (197)
                      ++++++++.+...|+..+....++.|+++++||+|+.......  ......+.+..+++..+++..+...|+++||++|.
T Consensus        81 ~~~~~sf~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~a~~~~~~~~~e~Sa~~~~  160 (173)
T cd04130          81 VVNPSSFQNISEKWIPEIRKHNPKAPIILVGTQADLRTDVNVLIQLARYGEKPVSQSRAKALAEKIGACEYIECSALTQK  160 (173)
T ss_pred             CCCHHHHHHHHHHHHHHHHhhCCCCCEEEEeeChhhccChhHHHHHhhcCCCCcCHHHHHHHHHHhCCCeEEEEeCCCCC
Confidence            9999999998667888888766789999999999996432100  11112345777889999999988789999999999


Q ss_pred             CHHHHHHHHHH
Q 036449          165 NVKAVFDAAIR  175 (197)
Q Consensus       165 ~i~~l~~~i~~  175 (197)
                      |++++|+.++-
T Consensus       161 ~v~~lf~~~~~  171 (173)
T cd04130         161 NLKEVFDTAIL  171 (173)
T ss_pred             CHHHHHHHHHh
Confidence            99999998763

Wrch-1 (Wnt-1 responsive Cdc42 homolog) is a Rho family GTPase that shares significant sequence and functional similarity with Cdc42. Wrch-1 was first identified in mouse mammary epithelial cells, where its transcription is upregulated in Wnt-1 transformation. Wrch-1 contains N- and C-terminal extensions relative to cdc42, suggesting potential differences in cellular localization and function. The Wrch-1 N-terminal extension contains putative SH3 domain-binding motifs and has been shown to bind the SH3 domain-containing protein Grb2, which increases the level of active Wrch-1 in cells. Unlike Cdc42, which localizes to the cytosol and perinuclear membranes, Wrch-1 localizes extensively with the plasma membrane and endosomes. The membrane association, localization, and biological activity of Wrch-1 indicate an atypical model of regulation distinct from other Rho family GTPases. Most Rho proteins contain a lipid modification site at the C-terminus,

>cd04110 Rab35 Rab35 subfamily

Probab=100.00  E-value=3.5e-35  Score=208.09  Aligned_cols=165  Identities=32%  Similarity=0.594  Sum_probs=144.9

Q ss_pred             CceeEEEEEcCCCCCHHHHHHHHhhCCCCCCCCCceeeee-eEEEEECCeEEEEEEEeCCCccccccccccCcCCCcEEE
Q 036449            4 SRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNF-SANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFI   82 (197)
Q Consensus         4 ~~~~~i~v~G~~~~GKstli~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i   82 (197)
                      +..++|+++|++|||||||++++..+.+...+.+|.+..+ ...+.+++..+.+.+||+||++.+..++..++.++++++
T Consensus         4 ~~~~kivvvG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~a~~ii   83 (199)
T cd04110           4 DHLFKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGERVKLQIWDTAGQERFRTITSTYYRGTHGVI   83 (199)
T ss_pred             CceeEEEEECCCCCCHHHHHHHHhcCCCCCCcCccccceeEEEEEEECCEEEEEEEEeCCCchhHHHHHHHHhCCCcEEE
Confidence            4579999999999999999999999998888888876443 455666777888999999999999999999999999999


Q ss_pred             EEEeCCCchhHHHHHHHHHHHHhhhCCCCCEEEEeeCCcccCCcccccCCCCCCcccHHHHHHHHHHhCCCceEEeccCC
Q 036449           83 LAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPISTAQGEELRKLIGAPAYIECSSKT  162 (197)
Q Consensus        83 ~v~d~~~~~s~~~~~~~~~~~i~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~  162 (197)
                      +|||++++++++.+ ..|+..+....+..|+++|+||+|+.+...          +..+++..+++..+. +++++||++
T Consensus        84 lv~D~~~~~s~~~~-~~~~~~i~~~~~~~piivVgNK~Dl~~~~~----------~~~~~~~~~~~~~~~-~~~e~Sa~~  151 (199)
T cd04110          84 VVYDVTNGESFVNV-KRWLQEIEQNCDDVCKVLVGNKNDDPERKV----------VETEDAYKFAGQMGI-SLFETSAKE  151 (199)
T ss_pred             EEEECCCHHHHHHH-HHHHHHHHHhCCCCCEEEEEECcccccccc----------cCHHHHHHHHHHcCC-EEEEEECCC
Confidence            99999999999998 789998888778899999999999976443          567778888888886 899999999


Q ss_pred             CCCHHHHHHHHHHHHcCC
Q 036449          163 QQNVKAVFDAAIRVVLQP  180 (197)
Q Consensus       163 ~~~i~~l~~~i~~~~~~~  180 (197)
                      |.|++++|++|.+.+...
T Consensus       152 ~~gi~~lf~~l~~~~~~~  169 (199)
T cd04110         152 NINVEEMFNCITELVLRA  169 (199)
T ss_pred             CcCHHHHHHHHHHHHHHh
Confidence            999999999999988764

Rab35 is one of several Rab proteins to be found to participate in the regulation of osteoclast cells in rats. In addition, Rab35 has been identified as a protein that interacts with nucleophosmin-anaplastic lymphoma kinase (NPM-ALK) in human cells. Overexpression of NPM-ALK is a key oncogenic event in some anaplastic large-cell lymphomas; since Rab35 interacts with N|PM-ALK, it may provide a target for cancer treatments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is

>cd04117 Rab15 Rab15 subfamily

Probab=100.00  E-value=4.4e-35  Score=201.16  Aligned_cols=158  Identities=35%  Similarity=0.652  Sum_probs=140.2

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhhCCCCCCCCCceeeee-eEEEEECCeEEEEEEEeCCCccccccccccCcCCCcEEEEEE
Q 036449            7 IKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNF-SANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAF   85 (197)
Q Consensus         7 ~~i~v~G~~~~GKstli~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~   85 (197)
                      ++|+++|++|+|||||++++..+.+...+.+|.+..+ ...+.+++..+.+++||++|++++..++..++.++|++++||
T Consensus         1 ~ki~vvG~~~~GKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~i~v~   80 (161)
T cd04117           1 FRLLLIGDSGVGKTCLLCRFTDNEFHSSHISTIGVDFKMKTIEVDGIKVRIQIWDTAGQERYQTITKQYYRRAQGIFLVY   80 (161)
T ss_pred             CEEEEECcCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEeCCCcHhHHhhHHHHhcCCcEEEEEE
Confidence            5899999999999999999999999888888886544 456777888899999999999999999999999999999999


Q ss_pred             eCCCchhHHHHHHHHHHHHhhhC-CCCCEEEEeeCCcccCCcccccCCCCCCcccHHHHHHHHHHhCCCceEEeccCCCC
Q 036449           86 SLISKASYENVSKKWIPELKHYA-PGVPIILVGTKLDLRDDKQFFIDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQQ  164 (197)
Q Consensus        86 d~~~~~s~~~~~~~~~~~i~~~~-~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~  164 (197)
                      |++++++++.+ ..|+..+.... .+.|+++|+||.|+...+.          +..+++..+++.++. +|+++||++|.
T Consensus        81 d~~~~~sf~~~-~~~~~~~~~~~~~~~~iilvgnK~Dl~~~~~----------v~~~~~~~~~~~~~~-~~~e~Sa~~~~  148 (161)
T cd04117          81 DISSERSYQHI-MKWVSDVDEYAPEGVQKILIGNKADEEQKRQ----------VGDEQGNKLAKEYGM-DFFETSACTNS  148 (161)
T ss_pred             ECCCHHHHHHH-HHHHHHHHHhCCCCCeEEEEEECcccccccC----------CCHHHHHHHHHHcCC-EEEEEeCCCCC
Confidence            99999999999 78988887766 3799999999999976543          667889999998887 89999999999


Q ss_pred             CHHHHHHHHHHH
Q 036449          165 NVKAVFDAAIRV  176 (197)
Q Consensus       165 ~i~~l~~~i~~~  176 (197)
                      |++++|.+|++.
T Consensus       149 ~v~~~f~~l~~~  160 (161)
T cd04117         149 NIKESFTRLTEL  160 (161)
T ss_pred             CHHHHHHHHHhh
Confidence            999999999875

Rab15 colocalizes with the transferrin receptor in early endosome compartments, but not with late endosomal markers. It codistributes with Rab4 and Rab5 on early/sorting endosomes, and with Rab11 on pericentriolar recycling endosomes. It is believed to function as an inhibitory GTPase that regulates distinct steps in early endocytic trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to

>cd01867 Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2

Probab=100.00  E-value=5.1e-35  Score=202.07  Aligned_cols=163  Identities=30%  Similarity=0.628  Sum_probs=143.2

Q ss_pred             ceeEEEEEcCCCCCHHHHHHHHhhCCCCCCCCCceeeee-eEEEEECCeEEEEEEEeCCCccccccccccCcCCCcEEEE
Q 036449            5 RFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNF-SANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFIL   83 (197)
Q Consensus         5 ~~~~i~v~G~~~~GKstli~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~   83 (197)
                      ..+||+++|++|+|||||++++..+.+...+.++.+..+ ...+.+++..+.+++||+||++.+...+..+++++|++++
T Consensus         2 ~~~ki~vvG~~~~GKSsl~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~ad~~i~   81 (167)
T cd01867           2 YLFKLLLIGDSGVGKSCLLLRFSEDSFNPSFISTIGIDFKIRTIELDGKKIKLQIWDTAGQERFRTITTAYYRGAMGIIL   81 (167)
T ss_pred             cceEEEEECCCCCCHHHHHHHHhhCcCCcccccCccceEEEEEEEECCEEEEEEEEeCCchHHHHHHHHHHhCCCCEEEE
Confidence            468999999999999999999999999888888886544 4456678888899999999999999888889999999999


Q ss_pred             EEeCCCchhHHHHHHHHHHHHhhhC-CCCCEEEEeeCCcccCCcccccCCCCCCcccHHHHHHHHHHhCCCceEEeccCC
Q 036449           84 AFSLISKASYENVSKKWIPELKHYA-PGVPIILVGTKLDLRDDKQFFIDHPGAVPISTAQGEELRKLIGAPAYIECSSKT  162 (197)
Q Consensus        84 v~d~~~~~s~~~~~~~~~~~i~~~~-~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~  162 (197)
                      |||++++++++.+ ..|+..+.... ++.|+++|+||+|+.+.+.          ...+++..++...+. +++++||++
T Consensus        82 v~d~~~~~s~~~~-~~~~~~i~~~~~~~~p~iiv~nK~Dl~~~~~----------~~~~~~~~~~~~~~~-~~~~~Sa~~  149 (167)
T cd01867          82 VYDITDEKSFENI-RNWMRNIEEHASEDVERMLVGNKCDMEEKRV----------VSKEEGEALADEYGI-KFLETSAKA  149 (167)
T ss_pred             EEECcCHHHHHhH-HHHHHHHHHhCCCCCcEEEEEECcccccccC----------CCHHHHHHHHHHcCC-EEEEEeCCC
Confidence            9999999999998 67988887765 5799999999999976443          566778888888887 899999999


Q ss_pred             CCCHHHHHHHHHHHHcC
Q 036449          163 QQNVKAVFDAAIRVVLQ  179 (197)
Q Consensus       163 ~~~i~~l~~~i~~~~~~  179 (197)
                      +.|++++|+++.+.+..
T Consensus       150 ~~~v~~~~~~i~~~~~~  166 (167)
T cd01867         150 NINVEEAFFTLAKDIKK  166 (167)
T ss_pred             CCCHHHHHHHHHHHHHh
Confidence            99999999999998754

Rab8/Sec4/Ypt2 are known or suspected to be involved in post-Golgi transport to the plasma membrane. It is likely that these Rabs have functions that are specific to the mammalian lineage and have no orthologs in plants. Rab8 modulates polarized membrane transport through reorganization of actin and microtubules, induces the formation of new surface extensions, and has an important role in directed membrane transport to cell surfaces. The Ypt2 gene of the fission yeast Schizosaccharomyces pombe encodes a member of the Ypt/Rab family of small GTP-binding proteins, related in sequence to Sec4p of Saccharomyces cerevisiae but closer to mammalian Rab8. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhi

>cd04135 Tc10 TC10 subfamily

Probab=100.00  E-value=1.2e-34  Score=201.37  Aligned_cols=171  Identities=56%  Similarity=1.016  Sum_probs=147.1

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhhCCCCCCCCCceeeeeeEEEEECCeEEEEEEEeCCCccccccccccCcCCCcEEEEEEe
Q 036449            7 IKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFS   86 (197)
Q Consensus         7 ~~i~v~G~~~~GKstli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d   86 (197)
                      +||+++|++|+|||||++++..+.+...+.++....+...+.+++..+.+.+||+||++.+...+..++.++|++++|||
T Consensus         1 ~ki~i~G~~~~GKTsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~~   80 (174)
T cd04135           1 LKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVFDHYAVSVTVGGKQYLLGLYDTAGQEDYDRLRPLSYPMTDVFLICFS   80 (174)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeeEEEEEECCEEEEEEEEeCCCcccccccccccCCCCCEEEEEEE
Confidence            58999999999999999999999998888888877777777788888899999999999999999999999999999999


Q ss_pred             CCCchhHHHHHHHHHHHHhhhCCCCCEEEEeeCCcccCCccc--ccCCCCCCcccHHHHHHHHHHhCCCceEEeccCCCC
Q 036449           87 LISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLRDDKQF--FIDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQQ  164 (197)
Q Consensus        87 ~~~~~s~~~~~~~~~~~i~~~~~~~~~ivv~nK~D~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~  164 (197)
                      ++++++++.+...|...+....++.|+++|+||+|+.+....  .........++.+++..+++..+..+|+++||++|.
T Consensus        81 ~~~~~s~~~~~~~~~~~l~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~~  160 (174)
T cd04135          81 VVNPASFQNVKEEWVPELKEYAPNVPYLLVGTQIDLRDDPKTLARLNDMKEKPVTVEQGQKLAKEIGAHCYVECSALTQK  160 (174)
T ss_pred             CCCHHHHHHHHHHHHHHHHhhCCCCCEEEEeEchhhhcChhhHHHHhhccCCCCCHHHHHHHHHHcCCCEEEEecCCcCC
Confidence            999999999866888888776789999999999998653211  011222335677889999999997689999999999


Q ss_pred             CHHHHHHHHHHHH
Q 036449          165 NVKAVFDAAIRVV  177 (197)
Q Consensus       165 ~i~~l~~~i~~~~  177 (197)
                      |++++|+.+++.+
T Consensus       161 gi~~~f~~~~~~~  173 (174)
T cd04135         161 GLKTVFDEAILAI  173 (174)
T ss_pred             CHHHHHHHHHHHh
Confidence            9999999999875

TC10 is a Rho family protein that has been shown to induce microspike formation and neurite outgrowth in vitro. Its expression changes dramatically after peripheral nerve injury, suggesting an important role in promoting axonal outgrowth and regeneration. TC10 regulates translocation of insulin-stimulated GLUT4 in adipocytes and has also been shown to bind directly to Golgi COPI coat proteins. GTP-bound TC10 in vitro can bind numerous potential effectors. Depending on its subcellular localization and distinct functional domains, TC10 can differentially regulate two types of filamentous actin in adipocytes. TC10 mRNAs are highly expressed in three types of mouse muscle tissues: leg skeletal muscle, cardiac muscle, and uterus; they were also present in brain, with higher levels in adults than in newborns. TC10 has also been shown to play a role in regulating the expression of cystic fibrosis transmembrane conductance regulator (CFTR) through interacti

>cd04127 Rab27A Rab27a subfamily

Probab=100.00  E-value=4.3e-35  Score=204.77  Aligned_cols=164  Identities=37%  Similarity=0.635  Sum_probs=141.4

Q ss_pred             CceeEEEEEcCCCCCHHHHHHHHhhCCCCCCCCCceeeeee-EEEEEC----------CeEEEEEEEeCCCccccccccc
Q 036449            4 SRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFS-ANVVVN----------GSTVNLGLWDTAGQEDYNRLRP   72 (197)
Q Consensus         4 ~~~~~i~v~G~~~~GKstli~~~~~~~~~~~~~~~~~~~~~-~~~~~~----------~~~~~~~i~D~~G~~~~~~~~~   72 (197)
                      .+.+||+++|++|||||||++++..+.+...+.+|.+..+. ..+.+.          +..+.+.+||+||++.+...+.
T Consensus         2 ~~~~ki~ivG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~   81 (180)
T cd04127           2 DYLIKFLALGDSGVGKTSFLYQYTDNKFNPKFITTVGIDFREKRVVYNSSGPGGTLGRGQRIHLQLWDTAGQERFRSLTT   81 (180)
T ss_pred             CceEEEEEECCCCCCHHHHHHHHhcCCCCccCCCccceEEEEEEEEEcCccccccccCCCEEEEEEEeCCChHHHHHHHH
Confidence            35699999999999999999999999998888888764443 333332          4568899999999999999999


Q ss_pred             cCcCCCcEEEEEEeCCCchhHHHHHHHHHHHHhhhC--CCCCEEEEeeCCcccCCcccccCCCCCCcccHHHHHHHHHHh
Q 036449           73 LSYRGADVFILAFSLISKASYENVSKKWIPELKHYA--PGVPIILVGTKLDLRDDKQFFIDHPGAVPISTAQGEELRKLI  150 (197)
Q Consensus        73 ~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~i~~~~--~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  150 (197)
                      .+++++|++++|||+++++++..+ ..|+..+....  ++.|+++|+||+|+.+.+.          +..+++.++++..
T Consensus        82 ~~~~~~~~~i~v~d~~~~~s~~~~-~~~~~~i~~~~~~~~~piiiv~nK~Dl~~~~~----------v~~~~~~~~~~~~  150 (180)
T cd04127          82 AFFRDAMGFLLIFDLTNEQSFLNV-RNWMSQLQTHAYCENPDIVLCGNKADLEDQRQ----------VSEEQAKALADKY  150 (180)
T ss_pred             HHhCCCCEEEEEEECCCHHHHHHH-HHHHHHHHHhcCCCCCcEEEEEeCccchhcCc----------cCHHHHHHHHHHc
Confidence            999999999999999999999999 78988887654  6889999999999976543          5677889999999


Q ss_pred             CCCceEEeccCCCCCHHHHHHHHHHHHcC
Q 036449          151 GAPAYIECSSKTQQNVKAVFDAAIRVVLQ  179 (197)
Q Consensus       151 ~~~~~~~~sa~~~~~i~~l~~~i~~~~~~  179 (197)
                      +. +++++||++|.|++++|++|++.+.+
T Consensus       151 ~~-~~~e~Sak~~~~v~~l~~~l~~~~~~  178 (180)
T cd04127         151 GI-PYFETSAATGTNVEKAVERLLDLVMK  178 (180)
T ss_pred             CC-eEEEEeCCCCCCHHHHHHHHHHHHHh
Confidence            87 89999999999999999999987754

The Rab27a subfamily consists of Rab27a and its highly homologous isoform, Rab27b. Unlike most Rab proteins whose functions remain poorly defined, Rab27a has many known functions. Rab27a has multiple effector proteins, and depending on which effector it binds, Rab27a has different functions as well as tissue distribution and/or cellular localization. Putative functions have been assigned to Rab27a when associated with the effector proteins Slp1, Slp2, Slp3, Slp4, Slp5, DmSlp, rabphilin, Dm/Ce-rabphilin, Slac2-a, Slac2-b, Slac2-c, Noc2, JFC1, and Munc13-4. Rab27a has been associated with several human diseases, including hemophagocytic syndrome (Griscelli syndrome or GS), Hermansky-Pudlak syndrome, and choroidermia. In the case of GS, a rare, autosomal recessive disease, a Rab27a mutation is directly responsible for the disorder. When Rab27a is localized to the secretory granules of pancreatic beta cells, it is believed to mediate glucose-stimulated

>cd04128 Spg1 Spg1p

Probab=100.00  E-value=8.4e-35  Score=203.14  Aligned_cols=168  Identities=29%  Similarity=0.567  Sum_probs=140.5

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhhCCCCCCCCCceeeee-eEEEEECCeEEEEEEEeCCCccccccccccCcCCCcEEEEEE
Q 036449            7 IKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNF-SANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAF   85 (197)
Q Consensus         7 ~~i~v~G~~~~GKstli~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~   85 (197)
                      +||+++|.+|+|||||++++..+.+...+.+|.+..+ ...+.+++..+.+++||++|++.|..++..++.++|++++||
T Consensus         1 ~Ki~vlG~~~vGKTsLi~~~~~~~f~~~~~~T~g~~~~~~~i~~~~~~~~l~iwDt~G~~~~~~~~~~~~~~a~~iilv~   80 (182)
T cd04128           1 LKIGLLGDAQIGKTSLMVKYVEGEFDEDYIQTLGVNFMEKTISIRGTEITFSIWDLGGQREFINMLPLVCNDAVAILFMF   80 (182)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCCchhHHHhhHHHCcCCCEEEEEE
Confidence            5899999999999999999999999988899986544 456778888899999999999999999999999999999999


Q ss_pred             eCCCchhHHHHHHHHHHHHhhhCC-CCCEEEEeeCCcccCCcccccCCCCCCcccHHHHHHHHHHhCCCceEEeccCCCC
Q 036449           86 SLISKASYENVSKKWIPELKHYAP-GVPIILVGTKLDLRDDKQFFIDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQQ  164 (197)
Q Consensus        86 d~~~~~s~~~~~~~~~~~i~~~~~-~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~  164 (197)
                      |++++++++.+ ..|+..+....+ ..| ++|+||+|+.....     ........++++++++..+. +++++||++|.
T Consensus        81 D~t~~~s~~~i-~~~~~~~~~~~~~~~p-ilVgnK~Dl~~~~~-----~~~~~~~~~~~~~~a~~~~~-~~~e~SAk~g~  152 (182)
T cd04128          81 DLTRKSTLNSI-KEWYRQARGFNKTAIP-ILVGTKYDLFADLP-----PEEQEEITKQARKYAKAMKA-PLIFCSTSHSI  152 (182)
T ss_pred             ECcCHHHHHHH-HHHHHHHHHhCCCCCE-EEEEEchhcccccc-----chhhhhhHHHHHHHHHHcCC-EEEEEeCCCCC
Confidence            99999999999 789888877653 456 68899999964210     00011224567788888887 89999999999


Q ss_pred             CHHHHHHHHHHHHcCCCc
Q 036449          165 NVKAVFDAAIRVVLQPPK  182 (197)
Q Consensus       165 ~i~~l~~~i~~~~~~~~~  182 (197)
                      |++++|+++++.+.+.+.
T Consensus       153 ~v~~lf~~l~~~l~~~~~  170 (182)
T cd04128         153 NVQKIFKIVLAKAFDLPL  170 (182)
T ss_pred             CHHHHHHHHHHHHHhcCC
Confidence            999999999998876543

Spg1p (septum-promoting GTPase) was first identified in the fission yeast S. pombe, where it regulates septum formation in the septation initiation network (SIN) through the cdc7 protein kinase. Spg1p is an essential gene that localizes to the spindle pole bodies. When GTP-bound, it binds cdc7 and causes it to translocate to spindle poles. Sid4p (septation initiation defective) is required for localization of Spg1p to the spindle pole body, and the ability of Spg1p to promote septum formation from any point in the cell cycle depends on Sid4p. Spg1p is negatively regulated by Byr4 and cdc16, which form a two-component GTPase activating protein (GAP) for Spg1p. The existence of a SIN-related pathway in plants has been proposed. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are

>KOG0086 consensus GTPase Rab4, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=4.4e-36  Score=193.94  Aligned_cols=167  Identities=30%  Similarity=0.553  Sum_probs=153.3

Q ss_pred             ceeEEEEEcCCCCCHHHHHHHHhhCCCCCCCCCceeeee-eEEEEECCeEEEEEEEeCCCccccccccccCcCCCcEEEE
Q 036449            5 RFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNF-SANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFIL   83 (197)
Q Consensus         5 ~~~~i~v~G~~~~GKstli~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~   83 (197)
                      .-+|++++|+.|+|||+|+.+|..++|.++...|.+..+ +..+.+.++.+++++|||.||++|++....|++.+.+.++
T Consensus         8 yLfKfl~iG~aGtGKSCLLh~Fie~kfkDdssHTiGveFgSrIinVGgK~vKLQIWDTAGQErFRSVtRsYYRGAAGAlL   87 (214)
T KOG0086|consen    8 YLFKFLVIGSAGTGKSCLLHQFIENKFKDDSSHTIGVEFGSRIVNVGGKTVKLQIWDTAGQERFRSVTRSYYRGAAGALL   87 (214)
T ss_pred             hhheeEEeccCCCChhHHHHHHHHhhhcccccceeeeeecceeeeecCcEEEEEEeecccHHHHHHHHHHHhccccceEE
Confidence            448999999999999999999999999999888887666 6778899999999999999999999999999999999999


Q ss_pred             EEeCCCchhHHHHHHHHHHHHhhhC-CCCCEEEEeeCCcccCCcccccCCCCCCcccHHHHHHHHHHhCCCceEEeccCC
Q 036449           84 AFSLISKASYENVSKKWIPELKHYA-PGVPIILVGTKLDLRDDKQFFIDHPGAVPISTAQGEELRKLIGAPAYIECSSKT  162 (197)
Q Consensus        84 v~d~~~~~s~~~~~~~~~~~i~~~~-~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~  162 (197)
                      |||++++++|+.+ ..|+...+... |++-+++++||.|+.+.++          ++..++..|+++... .+.++||++
T Consensus        88 VYD~TsrdsfnaL-tnWL~DaR~lAs~nIvviL~GnKkDL~~~R~----------VtflEAs~FaqEnel-~flETSa~T  155 (214)
T KOG0086|consen   88 VYDITSRDSFNAL-TNWLTDARTLASPNIVVILCGNKKDLDPERE----------VTFLEASRFAQENEL-MFLETSALT  155 (214)
T ss_pred             EEeccchhhHHHH-HHHHHHHHhhCCCcEEEEEeCChhhcChhhh----------hhHHHHHhhhcccce-eeeeecccc
Confidence            9999999999999 79999999888 7888999999999988776          899999999999998 899999999


Q ss_pred             CCCHHHHHHHHHHHHcCCCch
Q 036449          163 QQNVKAVFDAAIRVVLQPPKT  183 (197)
Q Consensus       163 ~~~i~~l~~~i~~~~~~~~~~  183 (197)
                      |+|+++.|-...+.+..+.+.
T Consensus       156 GeNVEEaFl~c~~tIl~kIE~  176 (214)
T KOG0086|consen  156 GENVEEAFLKCARTILNKIES  176 (214)
T ss_pred             cccHHHHHHHHHHHHHHHHhh
Confidence            999999999988887765443

>PF00071 Ras: Ras family; InterPro: IPR001806 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases

Probab=100.00  E-value=3.4e-35  Score=201.91  Aligned_cols=159  Identities=43%  Similarity=0.850  Sum_probs=147.0

Q ss_pred             EEEEEcCCCCCHHHHHHHHhhCCCCCCCCCce-eeeeeEEEEECCeEEEEEEEeCCCccccccccccCcCCCcEEEEEEe
Q 036449            8 KCVTVGDGAVGKTCLLISYTSNTFPTDYVPTV-FDNFSANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFS   86 (197)
Q Consensus         8 ~i~v~G~~~~GKstli~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d   86 (197)
                      ||+++|++|||||||+++|.++.+...+.+|. .+.+...+..++..+.+++||++|++.|..++..++.++|++|+|||
T Consensus         1 Ki~vvG~~~vGKtsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~ii~fd   80 (162)
T PF00071_consen    1 KIVVVGDSGVGKTSLINRLINGEFPENYIPTIGIDSYSKEVSIDGKPVNLEIWDTSGQERFDSLRDIFYRNSDAIIIVFD   80 (162)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHSSTTSSSETTSSEEEEEEEEEETTEEEEEEEEEETTSGGGHHHHHHHHTTESEEEEEEE
T ss_pred             CEEEECCCCCCHHHHHHHHHhhcccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            79999999999999999999999999999988 56667788888999999999999999999988899999999999999


Q ss_pred             CCCchhHHHHHHHHHHHHhhhCC-CCCEEEEeeCCcccCCcccccCCCCCCcccHHHHHHHHHHhCCCceEEeccCCCCC
Q 036449           87 LISKASYENVSKKWIPELKHYAP-GVPIILVGTKLDLRDDKQFFIDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQQN  165 (197)
Q Consensus        87 ~~~~~s~~~~~~~~~~~i~~~~~-~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~  165 (197)
                      ++++++++.+ ..|+..+....+ +.|++++|||.|+.+.+.          ++.++++.+++.++. +|+++||+++.|
T Consensus        81 ~~~~~S~~~~-~~~~~~i~~~~~~~~~iivvg~K~D~~~~~~----------v~~~~~~~~~~~~~~-~~~e~Sa~~~~~  148 (162)
T PF00071_consen   81 VTDEESFENL-KKWLEEIQKYKPEDIPIIVVGNKSDLSDERE----------VSVEEAQEFAKELGV-PYFEVSAKNGEN  148 (162)
T ss_dssp             TTBHHHHHTH-HHHHHHHHHHSTTTSEEEEEEETTTGGGGSS----------SCHHHHHHHHHHTTS-EEEEEBTTTTTT
T ss_pred             cccccccccc-ccccccccccccccccceeeecccccccccc----------chhhHHHHHHHHhCC-EEEEEECCCCCC
Confidence            9999999999 699999999986 799999999999987444          788899999999995 999999999999


Q ss_pred             HHHHHHHHHHHHc
Q 036449          166 VKAVFDAAIRVVL  178 (197)
Q Consensus       166 i~~l~~~i~~~~~  178 (197)
                      +.++|..+++.+.
T Consensus       149 v~~~f~~~i~~i~  161 (162)
T PF00071_consen  149 VKEIFQELIRKIL  161 (162)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHh
Confidence            9999999999875

This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction; PDB: 1M7B_A 2V55_B 3EG5_C 3LAW_A 1YHN_A 1T91_B 1HE8_B 3SEA_B 3T5G_A 1XTS_A ....

>cd04126 Rab20 Rab20 subfamily

Probab=100.00  E-value=3.7e-35  Score=209.47  Aligned_cols=170  Identities=28%  Similarity=0.431  Sum_probs=133.5

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhhCCCCCCCCCceeeeeeEEEEECCeEEEEEEEeCCCccccccccccCcCCCcEEEEEEe
Q 036449            7 IKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFS   86 (197)
Q Consensus         7 ~~i~v~G~~~~GKstli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d   86 (197)
                      +||+++|.+|||||||++++..+.+.. +.+|.+..+... .+  ..+.+.+||+||++.|..++..+++++|++|+|||
T Consensus         1 ~KIvivG~~~vGKTSLi~r~~~~~f~~-~~~Tig~~~~~~-~~--~~~~l~iwDt~G~e~~~~l~~~~~~~ad~~IlV~D   76 (220)
T cd04126           1 LKVVLLGDMNVGKTSLLHRYMERRFKD-TVSTVGGAFYLK-QW--GPYNISIWDTAGREQFHGLGSMYCRGAAAVILTYD   76 (220)
T ss_pred             CEEEEECCCCCcHHHHHHHHhcCCCCC-CCCccceEEEEE-Ee--eEEEEEEEeCCCcccchhhHHHHhccCCEEEEEEE
Confidence            589999999999999999999999875 456665433221 12  45788999999999999999999999999999999


Q ss_pred             CCCchhHHHHHHHHHHHHhhhCCCCCEEEEeeCCcccCCccc---------ccCCCCCCcccHHHHHHHHHHhCC-----
Q 036449           87 LISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLRDDKQF---------FIDHPGAVPISTAQGEELRKLIGA-----  152 (197)
Q Consensus        87 ~~~~~s~~~~~~~~~~~i~~~~~~~~~ivv~nK~D~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~-----  152 (197)
                      ++++++|+.+...|........++.|+++|+||+|+.+....         .......+.+..++++.+++..+.     
T Consensus        77 vt~~~Sf~~l~~~~~~l~~~~~~~~piIlVgNK~DL~~~~~~~~~~~~~~~~~~~~~~r~v~~~e~~~~a~~~~~~~~~~  156 (220)
T cd04126          77 VSNVQSLEELEDRFLGLTDTANEDCLFAVVGNKLDLTEEGALAGQEKDAGDRVSPEDQRQVTLEDAKAFYKRINKYKMLD  156 (220)
T ss_pred             CCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECcccccccccccccccccccccccccccCCHHHHHHHHHHhCcccccc
Confidence            999999999944444444333368999999999999652110         011112456888999999998772     


Q ss_pred             --------CceEEeccCCCCCHHHHHHHHHHHHcCC
Q 036449          153 --------PAYIECSSKTQQNVKAVFDAAIRVVLQP  180 (197)
Q Consensus       153 --------~~~~~~sa~~~~~i~~l~~~i~~~~~~~  180 (197)
                              .+|+||||++|.||+++|..+++.+...
T Consensus       157 ~~~~~~~~~~~~E~SA~tg~~V~elf~~i~~~~~~~  192 (220)
T cd04126         157 EDLSPAAEKMCFETSAKTGYNVDELFEYLFNLVLPL  192 (220)
T ss_pred             ccccccccceEEEeeCCCCCCHHHHHHHHHHHHHHH
Confidence                    2799999999999999999999877654

Rab20 is one of several Rab proteins that appear to be restricted in expression to the apical domain of murine polarized epithelial cells. It is expressed on the apical side of polarized kidney tubule and intestinal epithelial cells, and in non-polarized cells. It also localizes to vesico-tubular structures below the apical brush border of renal proximal tubule cells and in the apical region of duodenal epithelial cells. Rab20 has also been shown to colocalize with vacuolar H+-ATPases (V-ATPases) in mouse kidney cells, suggesting a role in the regulation of V-ATPase traffic in specific portions of the nephron. It was also shown to be one of several proteins whose expression is upregulated in human myelodysplastic syndrome (MDS) patients. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bo

>PLN03071 GTP-binding nuclear protein Ran; Provisional

Probab=100.00  E-value=8.3e-35  Score=208.66  Aligned_cols=163  Identities=28%  Similarity=0.454  Sum_probs=141.0

Q ss_pred             CceeEEEEEcCCCCCHHHHHHHHhhCCCCCCCCCceeeee-eEEEEECCeEEEEEEEeCCCccccccccccCcCCCcEEE
Q 036449            4 SRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNF-SANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFI   82 (197)
Q Consensus         4 ~~~~~i~v~G~~~~GKstli~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i   82 (197)
                      ...+||+++|.+|||||||++++..+.+...+.+|.+..+ ...+..++..+.+.+||++|++.|..++..++++++++|
T Consensus        11 ~~~~Ki~vvG~~gvGKTsli~~~~~~~f~~~~~~tig~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~i   90 (219)
T PLN03071         11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAI   90 (219)
T ss_pred             CCceEEEEECcCCCCHHHHHHHHhhCCCCCccCCccceeEEEEEEEECCeEEEEEEEECCCchhhhhhhHHHcccccEEE
Confidence            4568999999999999999999999999888888886443 445666777799999999999999999999999999999


Q ss_pred             EEEeCCCchhHHHHHHHHHHHHhhhCCCCCEEEEeeCCcccCCcccccCCCCCCcccHHHHHHHHHHhCCCceEEeccCC
Q 036449           83 LAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPISTAQGEELRKLIGAPAYIECSSKT  162 (197)
Q Consensus        83 ~v~d~~~~~s~~~~~~~~~~~i~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~  162 (197)
                      +|||++++++++.+ ..|+..+....++.|+++||||+|+....           +..+++ .+++..+. +|+++||++
T Consensus        91 lvfD~~~~~s~~~i-~~w~~~i~~~~~~~piilvgNK~Dl~~~~-----------v~~~~~-~~~~~~~~-~~~e~SAk~  156 (219)
T PLN03071         91 IMFDVTARLTYKNV-PTWHRDLCRVCENIPIVLCGNKVDVKNRQ-----------VKAKQV-TFHRKKNL-QYYEISAKS  156 (219)
T ss_pred             EEEeCCCHHHHHHH-HHHHHHHHHhCCCCcEEEEEEchhhhhcc-----------CCHHHH-HHHHhcCC-EEEEcCCCC
Confidence            99999999999998 78999998777889999999999996422           233444 67777776 899999999


Q ss_pred             CCCHHHHHHHHHHHHcCC
Q 036449          163 QQNVKAVFDAAIRVVLQP  180 (197)
Q Consensus       163 ~~~i~~l~~~i~~~~~~~  180 (197)
                      |.|++++|.+|++.+...
T Consensus       157 ~~~i~~~f~~l~~~~~~~  174 (219)
T PLN03071        157 NYNFEKPFLYLARKLAGD  174 (219)
T ss_pred             CCCHHHHHHHHHHHHHcC
Confidence            999999999999988765

>cd04176 Rap2 Rap2 subgroup

Probab=100.00  E-value=6.4e-35  Score=200.77  Aligned_cols=159  Identities=32%  Similarity=0.600  Sum_probs=139.7

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhhCCCCCCCCCceeeeeeEEEEECCeEEEEEEEeCCCccccccccccCcCCCcEEEEEEe
Q 036449            7 IKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFS   86 (197)
Q Consensus         7 ~~i~v~G~~~~GKstli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d   86 (197)
                      +||+++|.+|+|||||++++..+.+...+.++....+...+.+++..+.+++||+||+++|..++..++.++|++++|||
T Consensus         2 ~ki~i~G~~~vGKTsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~~i~v~d   81 (163)
T cd04176           2 YKVVVLGSGGVGKSALTVQFVSGTFIEKYDPTIEDFYRKEIEVDSSPSVLEILDTAGTEQFASMRDLYIKNGQGFIVVYS   81 (163)
T ss_pred             eEEEEECCCCCCHHHHHHHHHcCCCCCCCCCchhheEEEEEEECCEEEEEEEEECCCcccccchHHHHHhhCCEEEEEEE
Confidence            79999999999999999999999998888888876666777788888899999999999999999999999999999999


Q ss_pred             CCCchhHHHHHHHHHHHHhhhC--CCCCEEEEeeCCcccCCcccccCCCCCCcccHHHHHHHHHHhCCCceEEeccCCCC
Q 036449           87 LISKASYENVSKKWIPELKHYA--PGVPIILVGTKLDLRDDKQFFIDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQQ  164 (197)
Q Consensus        87 ~~~~~s~~~~~~~~~~~i~~~~--~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~  164 (197)
                      ++++++++++ ..|+..+....  ++.|+++|+||+|+.+...          +...++..++...+. +++++||+++.
T Consensus        82 ~~~~~s~~~~-~~~~~~~~~~~~~~~~piviv~nK~Dl~~~~~----------~~~~~~~~~~~~~~~-~~~~~Sa~~~~  149 (163)
T cd04176          82 LVNQQTFQDI-KPMRDQIVRVKGYEKVPIILVGNKVDLESERE----------VSSAEGRALAEEWGC-PFMETSAKSKT  149 (163)
T ss_pred             CCCHHHHHHH-HHHHHHHHHhcCCCCCCEEEEEECccchhcCc----------cCHHHHHHHHHHhCC-EEEEecCCCCC
Confidence            9999999998 67877777653  5899999999999965432          455667788888887 89999999999


Q ss_pred             CHHHHHHHHHHHH
Q 036449          165 NVKAVFDAAIRVV  177 (197)
Q Consensus       165 ~i~~l~~~i~~~~  177 (197)
                      |++++|.++++.+
T Consensus       150 ~v~~l~~~l~~~l  162 (163)
T cd04176         150 MVNELFAEIVRQM  162 (163)
T ss_pred             CHHHHHHHHHHhc
Confidence            9999999998764

The Rap2 subgroup is part of the Rap subfamily of the Ras family. It consists of Rap2a, Rap2b, and Rap2c. Both isoform 3 of the human mitogen-activated protein kinase kinase kinase kinase 4 (MAP4K4) and Traf2- and Nck-interacting kinase (TNIK) are putative effectors of Rap2 in mediating the activation of c-Jun N-terminal kinase (JNK) to regulate the actin cytoskeleton. In human platelets, Rap2 was shown to interact with the cytoskeleton by binding the actin filaments. In embryonic Xenopus development, Rap2 is necessary for the Wnt/beta-catenin signaling pathway. The Rap2 interacting protein 9 (RPIP9) is highly expressed in human breast carcinomas and correlates with a poor prognosis, suggesting a role for Rap2 in breast cancer oncogenesis. Rap2b, but not Rap2a, Rap2c, Rap1a, or Rap1b, is expressed in human red blood cells, where it is believed to be involved in vesiculation. A number of additional effector proteins for Rap2 have been identified, incl

>cd01865 Rab3 Rab3 subfamily

Probab=100.00  E-value=1.1e-34  Score=200.06  Aligned_cols=161  Identities=35%  Similarity=0.677  Sum_probs=140.2

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhhCCCCCCCCCceeeee-eEEEEECCeEEEEEEEeCCCccccccccccCcCCCcEEEEEE
Q 036449            7 IKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNF-SANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAF   85 (197)
Q Consensus         7 ~~i~v~G~~~~GKstli~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~   85 (197)
                      +||+++|++|||||||++++..+.+...+.++.+..+ ...+..++..+.+++||+||++.+...+..+++++|++++||
T Consensus         2 ~ki~i~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~g~~~~~~~~~~~~~~~~~~l~v~   81 (165)
T cd01865           2 FKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRNDKRVKLQIWDTAGQERYRTITTAYYRGAMGFILMY   81 (165)
T ss_pred             eEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCChHHHHHHHHHHccCCcEEEEEE
Confidence            7999999999999999999999999888888876444 344556677789999999999999999999999999999999


Q ss_pred             eCCCchhHHHHHHHHHHHHhhhC-CCCCEEEEeeCCcccCCcccccCCCCCCcccHHHHHHHHHHhCCCceEEeccCCCC
Q 036449           86 SLISKASYENVSKKWIPELKHYA-PGVPIILVGTKLDLRDDKQFFIDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQQ  164 (197)
Q Consensus        86 d~~~~~s~~~~~~~~~~~i~~~~-~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~  164 (197)
                      |++++++++.+ ..|+..+.... ++.|+++|+||+|+.+.+.          ...+++.+++...+. +++++||+++.
T Consensus        82 d~~~~~s~~~~-~~~~~~i~~~~~~~~piivv~nK~Dl~~~~~----------~~~~~~~~~~~~~~~-~~~~~Sa~~~~  149 (165)
T cd01865          82 DITNEESFNAV-QDWSTQIKTYSWDNAQVILVGNKCDMEDERV----------VSSERGRQLADQLGF-EFFEASAKENI  149 (165)
T ss_pred             ECCCHHHHHHH-HHHHHHHHHhCCCCCCEEEEEECcccCcccc----------cCHHHHHHHHHHcCC-EEEEEECCCCC
Confidence            99999999998 78988887766 5789999999999976443          556777888888888 89999999999


Q ss_pred             CHHHHHHHHHHHHcC
Q 036449          165 NVKAVFDAAIRVVLQ  179 (197)
Q Consensus       165 ~i~~l~~~i~~~~~~  179 (197)
                      |++++|+++++.+.+
T Consensus       150 gv~~l~~~l~~~~~~  164 (165)
T cd01865         150 NVKQVFERLVDIICD  164 (165)
T ss_pred             CHHHHHHHHHHHHHh
Confidence            999999999987643

The Rab3 subfamily contains Rab3A, Rab3B, Rab3C, and Rab3D. All four isoforms were found in mouse brain and endocrine tissues, with varying levels of expression. Rab3A, Rab3B, and Rab3C localized to synaptic and secretory vesicles; Rab3D was expressed at high levels only in adipose tissue, exocrine glands, and the endocrine pituitary, where it is localized to cytoplasmic secretory granules. Rab3 appears to control Ca2+-regulated exocytosis. The appropriate GDP/GTP exchange cycle of Rab3A is required for Ca2+-regulated exocytosis to occur, and interaction of the GTP-bound form of Rab3A with effector molecule(s) is widely believed to be essential for this process. Functionally, most studies point toward a role for Rab3 in the secretion of hormones and neurotransmitters. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promot

>cd04140 ARHI_like ARHI subfamily

Probab=100.00  E-value=8.7e-35  Score=200.52  Aligned_cols=158  Identities=28%  Similarity=0.518  Sum_probs=137.4

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhhCCCCCCCCCceeeeeeEEEEECCeEEEEEEEeCCCccccccccccCcCCCcEEEEEEe
Q 036449            7 IKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFS   86 (197)
Q Consensus         7 ~~i~v~G~~~~GKstli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d   86 (197)
                      +||+++|.+|||||||++++..+.+...+.++....+......+...+.+.+||+||+++|..++..++..++++++|||
T Consensus         2 ~kv~~vG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~d   81 (165)
T cd04140           2 YRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYRQVISCSKNICTLQITDTTGSHQFPAMQRLSISKGHAFILVYS   81 (165)
T ss_pred             eEEEEECCCCCCHHHHHHHHHhCCCCCCcCCcchheEEEEEEECCEEEEEEEEECCCCCcchHHHHHHhhcCCEEEEEEE
Confidence            79999999999999999999999998888888876666666677778899999999999999888888999999999999


Q ss_pred             CCCchhHHHHHHHHHHHHhhhC----CCCCEEEEeeCCcccCCcccccCCCCCCcccHHHHHHHHHHhCCCceEEeccCC
Q 036449           87 LISKASYENVSKKWIPELKHYA----PGVPIILVGTKLDLRDDKQFFIDHPGAVPISTAQGEELRKLIGAPAYIECSSKT  162 (197)
Q Consensus        87 ~~~~~s~~~~~~~~~~~i~~~~----~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~  162 (197)
                      ++++++++.+ ..|+..+....    ++.|+++|+||+|+.+.+.          +..+++..++..++. +|+++||++
T Consensus        82 ~~~~~s~~~~-~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~----------v~~~~~~~~~~~~~~-~~~e~SA~~  149 (165)
T cd04140          82 VTSKQSLEEL-KPIYELICEIKGNNIEKIPIMLVGNKCDESHKRE----------VSSNEGAACATEWNC-AFMETSAKT  149 (165)
T ss_pred             CCCHHHHHHH-HHHHHHHHHHhcCCCCCCCEEEEEECccccccCe----------ecHHHHHHHHHHhCC-cEEEeecCC
Confidence            9999999998 67777666532    5799999999999966433          566777888888887 899999999


Q ss_pred             CCCHHHHHHHHHHH
Q 036449          163 QQNVKAVFDAAIRV  176 (197)
Q Consensus       163 ~~~i~~l~~~i~~~  176 (197)
                      |.|++++|++|++.
T Consensus       150 g~~v~~~f~~l~~~  163 (165)
T cd04140         150 NHNVQELFQELLNL  163 (165)
T ss_pred             CCCHHHHHHHHHhc
Confidence            99999999999864

ARHI (A Ras homolog member I) is a member of the Ras family with several unique structural and functional properties. ARHI is expressed in normal human ovarian and breast tissue, but its expression is decreased or eliminated in breast and ovarian cancer. ARHI contains an N-terminal extension of 34 residues (human) that is required to retain its tumor suppressive activity. Unlike most other Ras family members, ARHI is maintained in the constitutively active (GTP-bound) state in resting cells and has modest GTPase activity. ARHI inhibits STAT3 (signal transducers and activators of transcription 3), a latent transcription factor whose abnormal activation plays a critical role in oncogenesis. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to

>cd04145 M_R_Ras_like M-Ras/R-Ras-like subfamily

Probab=100.00  E-value=1.2e-34  Score=199.47  Aligned_cols=161  Identities=35%  Similarity=0.616  Sum_probs=140.8

Q ss_pred             ceeEEEEEcCCCCCHHHHHHHHhhCCCCCCCCCceeeeeeEEEEECCeEEEEEEEeCCCccccccccccCcCCCcEEEEE
Q 036449            5 RFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILA   84 (197)
Q Consensus         5 ~~~~i~v~G~~~~GKstli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v   84 (197)
                      +.+||+++|.+|+|||||++++..+.+...+.++....+.....+++..+.+++||+||++++..++..++.++|++++|
T Consensus         1 ~~~ki~i~G~~~~GKtsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~ilv   80 (164)
T cd04145           1 PTYKLVVVGGGGVGKSALTIQFIQSYFVTDYDPTIEDSYTKQCEIDGQWAILDILDTAGQEEFSAMREQYMRTGEGFLLV   80 (164)
T ss_pred             CceEEEEECCCCCcHHHHHHHHHhCCCCcccCCCccceEEEEEEECCEEEEEEEEECCCCcchhHHHHHHHhhCCEEEEE
Confidence            35899999999999999999999998888888888777776777888888999999999999999999999999999999


Q ss_pred             EeCCCchhHHHHHHHHHHHHhhhC--CCCCEEEEeeCCcccCCcccccCCCCCCcccHHHHHHHHHHhCCCceEEeccCC
Q 036449           85 FSLISKASYENVSKKWIPELKHYA--PGVPIILVGTKLDLRDDKQFFIDHPGAVPISTAQGEELRKLIGAPAYIECSSKT  162 (197)
Q Consensus        85 ~d~~~~~s~~~~~~~~~~~i~~~~--~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~  162 (197)
                      ||++++++++.+ ..|+..+....  ++.|+++|+||+|+.....          +..+++..+++..+. +++++||++
T Consensus        81 ~d~~~~~s~~~~-~~~~~~~~~~~~~~~~piiiv~NK~Dl~~~~~----------~~~~~~~~~~~~~~~-~~~~~Sa~~  148 (164)
T cd04145          81 FSVTDRGSFEEV-DKFHTQILRVKDRDEFPMILVGNKADLEHQRK----------VSREEGQELARKLKI-PYIETSAKD  148 (164)
T ss_pred             EECCCHHHHHHH-HHHHHHHHHHhCCCCCCEEEEeeCccccccce----------ecHHHHHHHHHHcCC-cEEEeeCCC
Confidence            999999999998 67777766543  5899999999999965433          566677888888887 899999999


Q ss_pred             CCCHHHHHHHHHHHH
Q 036449          163 QQNVKAVFDAAIRVV  177 (197)
Q Consensus       163 ~~~i~~l~~~i~~~~  177 (197)
                      |.|++++|++|++.+
T Consensus       149 ~~~i~~l~~~l~~~~  163 (164)
T cd04145         149 RLNVDKAFHDLVRVI  163 (164)
T ss_pred             CCCHHHHHHHHHHhh
Confidence            999999999998765

This subfamily contains R-Ras2/TC21, M-Ras/R-Ras3, and related members of the Ras family. M-Ras is expressed in lympho-hematopoetic cells. It interacts with some of the known Ras effectors, but appears to also have its own effectors. Expression of mutated M-Ras leads to transformation of several types of cell lines, including hematopoietic cells, mammary epithelial cells, and fibroblasts. Overexpression of M-Ras is observed in carcinomas from breast, uterus, thyroid, stomach, colon, kidney, lung, and rectum. In addition, expression of a constitutively active M-Ras mutant in murine bone marrow induces a malignant mast cell leukemia that is distinct from the monocytic leukemia induced by H-Ras. TC21, along with H-Ras, has been shown to regulate the branching morphogenesis of ureteric bud cell branching in mice. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an ali

>KOG0393 consensus Ras-related small GTPase, Rho type [General function prediction only]

Probab=100.00  E-value=1.2e-35  Score=203.57  Aligned_cols=179  Identities=66%  Similarity=1.100  Sum_probs=163.8

Q ss_pred             CceeEEEEEcCCCCCHHHHHHHHhhCCCCCCCCCceeeeeeEEEEEC-CeEEEEEEEeCCCccccccccccCcCCCcEEE
Q 036449            4 SRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVN-GSTVNLGLWDTAGQEDYNRLRPLSYRGADVFI   82 (197)
Q Consensus         4 ~~~~~i~v~G~~~~GKstli~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i   82 (197)
                      ...+|++++|..++|||+|+..+..+.|+..|.||..+.+...+.++ ++.+.+.+|||.||++|+.+++..+.++|.|+
T Consensus         2 ~~~~K~VvVGDga~GKT~ll~~~t~~~fp~~yvPTVFdnys~~v~V~dg~~v~L~LwDTAGqedYDrlRplsY~~tdvfl   81 (198)
T KOG0393|consen    2 SRRIKCVVVGDGAVGKTCLLISYTTNAFPEEYVPTVFDNYSANVTVDDGKPVELGLWDTAGQEDYDRLRPLSYPQTDVFL   81 (198)
T ss_pred             ceeeEEEEECCCCcCceEEEEEeccCcCcccccCeEEccceEEEEecCCCEEEEeeeecCCCcccccccccCCCCCCEEE
Confidence            35689999999999999999999999999999999999999999995 99999999999999999999999999999999


Q ss_pred             EEEeCCCchhHHHHHHHHHHHHhhhCCCCCEEEEeeCCcccCCccc--ccCCCCCCcccHHHHHHHHHHhCCCceEEecc
Q 036449           83 LAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLRDDKQF--FIDHPGAVPISTAQGEELRKLIGAPAYIECSS  160 (197)
Q Consensus        83 ~v~d~~~~~s~~~~~~~~~~~i~~~~~~~~~ivv~nK~D~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa  160 (197)
                      +||++.+++|++.+...|+..+++.+|+.|+++||+|.||......  ...+.....+..++++.++++.|+..|+||||
T Consensus        82 ~cfsv~~p~S~~nv~~kW~pEi~~~cp~vpiiLVGtk~DLr~d~~~~~~l~~~~~~~Vt~~~g~~lA~~iga~~y~EcSa  161 (198)
T KOG0393|consen   82 LCFSVVSPESFENVKSKWIPEIKHHCPNVPIILVGTKADLRDDPSTLEKLQRQGLEPVTYEQGLELAKEIGAVKYLECSA  161 (198)
T ss_pred             EEEEcCChhhHHHHHhhhhHHHHhhCCCCCEEEEeehHHhhhCHHHHHHHHhccCCcccHHHHHHHHHHhCcceeeeehh
Confidence            9999999999999999999999999999999999999999853321  12334456688999999999999889999999


Q ss_pred             CCCCCHHHHHHHHHHHHcCCCc
Q 036449          161 KTQQNVKAVFDAAIRVVLQPPK  182 (197)
Q Consensus       161 ~~~~~i~~l~~~i~~~~~~~~~  182 (197)
                      ++..|++++|+..+..+...++
T Consensus       162 ~tq~~v~~vF~~a~~~~l~~~~  183 (198)
T KOG0393|consen  162 LTQKGVKEVFDEAIRAALRPPQ  183 (198)
T ss_pred             hhhCCcHHHHHHHHHHHhcccc
Confidence            9999999999999999988765

>cd01873 RhoBTB RhoBTB subfamily

Probab=100.00  E-value=1.5e-34  Score=203.48  Aligned_cols=168  Identities=43%  Similarity=0.672  Sum_probs=133.2

Q ss_pred             eeEEEEEcCCCCCHHHHHH-HHhhC-----CCCCCCCCcee--eeeeEE--------EEECCeEEEEEEEeCCCcccccc
Q 036449            6 FIKCVTVGDGAVGKTCLLI-SYTSN-----TFPTDYVPTVF--DNFSAN--------VVVNGSTVNLGLWDTAGQEDYNR   69 (197)
Q Consensus         6 ~~~i~v~G~~~~GKstli~-~~~~~-----~~~~~~~~~~~--~~~~~~--------~~~~~~~~~~~i~D~~G~~~~~~   69 (197)
                      .+||+++|.+|||||||+. ++..+     .+...+.||.+  +.+...        ..+++..+.+++|||+|++.  .
T Consensus         2 ~~Kiv~vG~~~vGKTsLi~~~~~~~~~~~~~f~~~~~pTi~~~~~~~~~~~~~~~~~~~~~~~~v~l~iwDTaG~~~--~   79 (195)
T cd01873           2 TIKCVVVGDNAVGKTRLICARACNKTLTQYQLLATHVPTVWAIDQYRVCQEVLERSRDVVDGVSVSLRLWDTFGDHD--K   79 (195)
T ss_pred             ceEEEEECCCCcCHHHHHHHHHhCCCcccccCccccCCceecccceeEEeeeccccceeeCCEEEEEEEEeCCCChh--h
Confidence            4799999999999999995 55543     34566778874  333322        25688899999999999975  3


Q ss_pred             ccccCcCCCcEEEEEEeCCCchhHHHHHHHHHHHHhhhCCCCCEEEEeeCCcccCCccccc---------CCCCCCcccH
Q 036449           70 LRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLRDDKQFFI---------DHPGAVPIST  140 (197)
Q Consensus        70 ~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~~~ivv~nK~D~~~~~~~~~---------~~~~~~~~~~  140 (197)
                      ....+++++|++|+|||++++.+|+.+...|+..+....++.|+++||||+|+........         .....+.++.
T Consensus        80 ~~~~~~~~ad~iilv~d~t~~~Sf~~~~~~w~~~i~~~~~~~piilvgNK~DL~~~~~~~~~~~~~~~~~~~~~~~~V~~  159 (195)
T cd01873          80 DRRFAYGRSDVVLLCFSIASPNSLRNVKTMWYPEIRHFCPRVPVILVGCKLDLRYADLDEVNRARRPLARPIKNADILPP  159 (195)
T ss_pred             hhcccCCCCCEEEEEEECCChhHHHHHHHHHHHHHHHhCCCCCEEEEEEchhccccccchhhhcccccccccccCCccCH
Confidence            4566889999999999999999999985579998887777899999999999964210000         0011356889


Q ss_pred             HHHHHHHHHhCCCceEEeccCCCCCHHHHHHHHHHH
Q 036449          141 AQGEELRKLIGAPAYIECSSKTQQNVKAVFDAAIRV  176 (197)
Q Consensus       141 ~~~~~~~~~~~~~~~~~~sa~~~~~i~~l~~~i~~~  176 (197)
                      ++++++++.+++ +|+||||++|.||+++|+.++++
T Consensus       160 ~e~~~~a~~~~~-~~~E~SAkt~~~V~e~F~~~~~~  194 (195)
T cd01873         160 ETGRAVAKELGI-PYYETSVVTQFGVKDVFDNAIRA  194 (195)
T ss_pred             HHHHHHHHHhCC-EEEEcCCCCCCCHHHHHHHHHHh
Confidence            999999999998 99999999999999999999875

Members of the RhoBTB subfamily of Rho GTPases are present in vertebrates, Drosophila, and Dictyostelium. RhoBTB proteins are characterized by a modular organization, consisting of a GTPase domain, a proline rich region, a tandem of two BTB (Broad-Complex, Tramtrack, and Bric a brac) domains, and a C-terminal region of unknown function. RhoBTB proteins may act as docking points for multiple components participating in signal transduction cascades. RhoBTB genes appeared upregulated in some cancer cell lines, suggesting a participation of RhoBTB proteins in the pathogenesis of particular tumors. Note that the Dictyostelium RacA GTPase domain is more closely related to Rac proteins than to RhoBTB proteins, where RacA actually belongs. Thus, the Dictyostelium RacA is not included here. Most Rho proteins contain a lipid modification site at the C-terminus; however, RhoBTB is one of few Rho subfamilies that lack this feature.

>cd04112 Rab26 Rab26 subfamily

Probab=100.00  E-value=1.1e-34  Score=204.38  Aligned_cols=163  Identities=36%  Similarity=0.678  Sum_probs=140.7

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhhCCCC-CCCCCceeeee-eEEEEECCeEEEEEEEeCCCccccccccccCcCCCcEEEEE
Q 036449            7 IKCVTVGDGAVGKTCLLISYTSNTFP-TDYVPTVFDNF-SANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILA   84 (197)
Q Consensus         7 ~~i~v~G~~~~GKstli~~~~~~~~~-~~~~~~~~~~~-~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v   84 (197)
                      +||+++|.+|||||||++++..+.+. ..+.++.+..+ ...+.+++..+.+++||+||++++...+..++..+|++|+|
T Consensus         1 ~Ki~vvG~~~vGKTSli~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~~i~v   80 (191)
T cd04112           1 FKVMLLGDSGVGKTCLLVRFKDGAFLNGNFIATVGIDFRNKVVTVDGVKVKLQIWDTAGQERFRSVTHAYYRDAHALLLL   80 (191)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCCCccCcCCcccceeEEEEEEECCEEEEEEEEeCCCcHHHHHhhHHHccCCCEEEEE
Confidence            58999999999999999999998875 35667765444 34567788889999999999999998888899999999999


Q ss_pred             EeCCCchhHHHHHHHHHHHHhhhC-CCCCEEEEeeCCcccCCcccccCCCCCCcccHHHHHHHHHHhCCCceEEeccCCC
Q 036449           85 FSLISKASYENVSKKWIPELKHYA-PGVPIILVGTKLDLRDDKQFFIDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQ  163 (197)
Q Consensus        85 ~d~~~~~s~~~~~~~~~~~i~~~~-~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~  163 (197)
                      +|++++++++.+ ..|+..+.... .+.|+++|+||+|+...+.          +..+++..++..++. +|+++||++|
T Consensus        81 ~D~~~~~s~~~~-~~~~~~i~~~~~~~~piiiv~NK~Dl~~~~~----------~~~~~~~~l~~~~~~-~~~e~Sa~~~  148 (191)
T cd04112          81 YDITNKASFDNI-RAWLTEIKEYAQEDVVIMLLGNKADMSGERV----------VKREDGERLAKEYGV-PFMETSAKTG  148 (191)
T ss_pred             EECCCHHHHHHH-HHHHHHHHHhCCCCCcEEEEEEcccchhccc----------cCHHHHHHHHHHcCC-eEEEEeCCCC
Confidence            999999999998 77888888776 4789999999999965443          556778888888887 8999999999


Q ss_pred             CCHHHHHHHHHHHHcCCC
Q 036449          164 QNVKAVFDAAIRVVLQPP  181 (197)
Q Consensus       164 ~~i~~l~~~i~~~~~~~~  181 (197)
                      .|++++|.+|++.+....
T Consensus       149 ~~v~~l~~~l~~~~~~~~  166 (191)
T cd04112         149 LNVELAFTAVAKELKHRK  166 (191)
T ss_pred             CCHHHHHHHHHHHHHHhc
Confidence            999999999999887763

First identified in rat pancreatic acinar cells, Rab26 is believed to play a role in recruiting mature granules to the plasma membrane upon beta-adrenergic stimulation. Rab26 belongs to the Rab functional group III, which are considered key regulators of intracellular vesicle transport during exocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.

>smart00173 RAS Ras subfamily of RAS small GTPases

Probab=100.00  E-value=1.1e-34  Score=199.82  Aligned_cols=160  Identities=34%  Similarity=0.624  Sum_probs=140.2

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhhCCCCCCCCCceeeeeeEEEEECCeEEEEEEEeCCCccccccccccCcCCCcEEEEEEe
Q 036449            7 IKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFS   86 (197)
Q Consensus         7 ~~i~v~G~~~~GKstli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d   86 (197)
                      +||+++|++|||||||++++..+.+...+.++....+.....+++..+.+.+||+||++++..++..++..++++++|||
T Consensus         1 ~ki~v~G~~~~GKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~~~~i~v~d   80 (164)
T smart00173        1 YKLVVLGSGGVGKSALTIQFVQGHFVDDYDPTIEDSYRKQIEIDGEVCLLDILDTAGQEEFSAMRDQYMRTGEGFLLVYS   80 (164)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCcCCcccCCchhhhEEEEEEECCEEEEEEEEECCCcccchHHHHHHHhhCCEEEEEEE
Confidence            58999999999999999999999998888888877777777788888999999999999999999999999999999999


Q ss_pred             CCCchhHHHHHHHHHHHHhhhC--CCCCEEEEeeCCcccCCcccccCCCCCCcccHHHHHHHHHHhCCCceEEeccCCCC
Q 036449           87 LISKASYENVSKKWIPELKHYA--PGVPIILVGTKLDLRDDKQFFIDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQQ  164 (197)
Q Consensus        87 ~~~~~s~~~~~~~~~~~i~~~~--~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~  164 (197)
                      ++++++++.+ ..|...+....  .+.|+++|+||+|+.+.+.          ...+++..+++..+. +++++||+++.
T Consensus        81 ~~~~~s~~~~-~~~~~~i~~~~~~~~~pii~v~nK~Dl~~~~~----------~~~~~~~~~~~~~~~-~~~~~Sa~~~~  148 (164)
T smart00173       81 ITDRQSFEEI-KKFREQILRVKDRDDVPIVLVGNKCDLESERV----------VSTEEGKELARQWGC-PFLETSAKERV  148 (164)
T ss_pred             CCCHHHHHHH-HHHHHHHHHhcCCCCCCEEEEEECccccccce----------EcHHHHHHHHHHcCC-EEEEeecCCCC
Confidence            9999999998 67777665543  4789999999999976443          556777888888886 89999999999


Q ss_pred             CHHHHHHHHHHHHc
Q 036449          165 NVKAVFDAAIRVVL  178 (197)
Q Consensus       165 ~i~~l~~~i~~~~~  178 (197)
                      |++++|++|++.+.
T Consensus       149 ~i~~l~~~l~~~~~  162 (164)
T smart00173      149 NVDEAFYDLVREIR  162 (164)
T ss_pred             CHHHHHHHHHHHHh
Confidence            99999999998765

Similar in fold and function to the bacterial EF-Tu GTPase. p21Ras couples receptor Tyr kinases and G protein receptors to protein kinase cascades

>cd04138 H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily

Probab=100.00  E-value=1.7e-34  Score=198.24  Aligned_cols=158  Identities=38%  Similarity=0.644  Sum_probs=139.1

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhhCCCCCCCCCceeeeeeEEEEECCeEEEEEEEeCCCccccccccccCcCCCcEEEEEEe
Q 036449            7 IKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFS   86 (197)
Q Consensus         7 ~~i~v~G~~~~GKstli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d   86 (197)
                      +||+++|.+|||||||++++..+.+...+.++.+..+.....+++..+.+++||+||++++..++..++.+++++++|||
T Consensus         2 ~ki~iiG~~~vGKTsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~l~~~~~~~~~~~i~v~~   81 (162)
T cd04138           2 YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFA   81 (162)
T ss_pred             eEEEEECCCCCCHHHHHHHHHhCCCcCCcCCcchheEEEEEEECCEEEEEEEEECCCCcchHHHHHHHHhcCCEEEEEEE
Confidence            79999999999999999999999998888888877777777788888889999999999999999999999999999999


Q ss_pred             CCCchhHHHHHHHHHHHHhhhC--CCCCEEEEeeCCcccCCcccccCCCCCCcccHHHHHHHHHHhCCCceEEeccCCCC
Q 036449           87 LISKASYENVSKKWIPELKHYA--PGVPIILVGTKLDLRDDKQFFIDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQQ  164 (197)
Q Consensus        87 ~~~~~s~~~~~~~~~~~i~~~~--~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~  164 (197)
                      ++++.+++.+ ..|+..+....  ++.|+++|+||+|+.+..           ....++..+++..+. +++++||++|.
T Consensus        82 ~~~~~s~~~~-~~~~~~i~~~~~~~~~piivv~nK~Dl~~~~-----------~~~~~~~~~~~~~~~-~~~~~Sa~~~~  148 (162)
T cd04138          82 INSRKSFEDI-HTYREQIKRVKDSDDVPMVLVGNKCDLAART-----------VSSRQGQDLAKSYGI-PYIETSAKTRQ  148 (162)
T ss_pred             CCCHHHHHHH-HHHHHHHHHhcCCCCCCEEEEEECcccccce-----------ecHHHHHHHHHHhCC-eEEEecCCCCC
Confidence            9999999988 67777766543  589999999999996532           456677788888887 89999999999


Q ss_pred             CHHHHHHHHHHHH
Q 036449          165 NVKAVFDAAIRVV  177 (197)
Q Consensus       165 ~i~~l~~~i~~~~  177 (197)
                      |++++|+++++.+
T Consensus       149 gi~~l~~~l~~~~  161 (162)
T cd04138         149 GVEEAFYTLVREI  161 (162)
T ss_pred             CHHHHHHHHHHHh
Confidence            9999999998764

H-Ras, N-Ras, and K-Ras4A/4B are the prototypical members of the Ras family. These isoforms generate distinct signal outputs despite interacting with a common set of activators and effectors, and are strongly associated with oncogenic progression in tumor initiation. Mutated versions of Ras that are insensitive to GAP stimulation (and are therefore constitutively active) are found in a significant fraction of human cancers. Many Ras guanine nucleotide exchange factors (GEFs) have been identified. They are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active (GTP-bound) Ras interacts with several effector proteins that stimulate a variety of diverse cytoplasmic signaling activities. Some are known to positively mediate the oncogenic properties of Ras, including Raf, phosphatidylinositol 3-kinase (PI3K), RalGEFs, and Tiam1.

>cd01869 Rab1_Ypt1 Rab1/Ypt1 subfamily

Probab=100.00  E-value=2e-34  Score=198.88  Aligned_cols=161  Identities=33%  Similarity=0.683  Sum_probs=141.5

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHhhCCCCCCCCCceeeee-eEEEEECCeEEEEEEEeCCCccccccccccCcCCCcEEEEE
Q 036449            6 FIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNF-SANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILA   84 (197)
Q Consensus         6 ~~~i~v~G~~~~GKstli~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v   84 (197)
                      .+||+++|++|||||||++++..+.+...+.++.+..+ ...+..++..+.+++||+||++.+...+..+++++|++|+|
T Consensus         2 ~~ki~i~G~~~vGKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~ii~v   81 (166)
T cd01869           2 LFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIV   81 (166)
T ss_pred             eEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCcHhHHHHHHHHhCcCCEEEEE
Confidence            48999999999999999999999988877777775443 45566778888999999999999999988999999999999


Q ss_pred             EeCCCchhHHHHHHHHHHHHhhhC-CCCCEEEEeeCCcccCCcccccCCCCCCcccHHHHHHHHHHhCCCceEEeccCCC
Q 036449           85 FSLISKASYENVSKKWIPELKHYA-PGVPIILVGTKLDLRDDKQFFIDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQ  163 (197)
Q Consensus        85 ~d~~~~~s~~~~~~~~~~~i~~~~-~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~  163 (197)
                      ||+++++++..+ ..|+..+.... ++.|+++|+||+|+.....          +..+++..+++..+. +++++||++|
T Consensus        82 ~d~~~~~s~~~l-~~~~~~~~~~~~~~~~~iiv~nK~Dl~~~~~----------~~~~~~~~~~~~~~~-~~~~~Sa~~~  149 (166)
T cd01869          82 YDVTDQESFNNV-KQWLQEIDRYASENVNKLLVGNKCDLTDKRV----------VDYSEAQEFADELGI-PFLETSAKNA  149 (166)
T ss_pred             EECcCHHHHHhH-HHHHHHHHHhCCCCCcEEEEEEChhcccccC----------CCHHHHHHHHHHcCC-eEEEEECCCC
Confidence            999999999999 67988887766 6899999999999865443          567788889988887 8999999999


Q ss_pred             CCHHHHHHHHHHHHc
Q 036449          164 QNVKAVFDAAIRVVL  178 (197)
Q Consensus       164 ~~i~~l~~~i~~~~~  178 (197)
                      .|++++|..|++.+.
T Consensus       150 ~~v~~~~~~i~~~~~  164 (166)
T cd01869         150 TNVEQAFMTMAREIK  164 (166)
T ss_pred             cCHHHHHHHHHHHHH
Confidence            999999999998875

Rab1 is found in every eukaryote and is a key regulatory component for the transport of vesicles from the ER to the Golgi apparatus. Studies on mutations of Ypt1, the yeast homolog of Rab1, showed that this protein is necessary for the budding of vesicles of the ER as well as for their transport to, and fusion with, the Golgi apparatus. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to t

>cd04124 RabL2 RabL2 subfamily

Probab=100.00  E-value=2.7e-34  Score=197.27  Aligned_cols=159  Identities=29%  Similarity=0.506  Sum_probs=136.3

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhhCCCCCCCCCceee-eeeEEEEECCeEEEEEEEeCCCccccccccccCcCCCcEEEEEE
Q 036449            7 IKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFD-NFSANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAF   85 (197)
Q Consensus         7 ~~i~v~G~~~~GKstli~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~   85 (197)
                      +||+++|.+|||||||++++..+.+...+.++... .+.....+++..+.+++||+||++.|..++..+++++|++|+||
T Consensus         1 ~ki~vvG~~~vGKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~   80 (161)
T cd04124           1 VKIILLGDSAVGKSKLVERFLMDGYEPQQLSTYALTLYKHNAKFEGKTILVDFWDTAGQERFQTMHASYYHKAHACILVF   80 (161)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCCCCCcCCceeeEEEEEEEEECCEEEEEEEEeCCCchhhhhhhHHHhCCCCEEEEEE
Confidence            58999999999999999999999988777777643 33445667788899999999999999999999999999999999


Q ss_pred             eCCCchhHHHHHHHHHHHHhhhCCCCCEEEEeeCCcccCCcccccCCCCCCcccHHHHHHHHHHhCCCceEEeccCCCCC
Q 036449           86 SLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQQN  165 (197)
Q Consensus        86 d~~~~~s~~~~~~~~~~~i~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~  165 (197)
                      |++++.+++.+ ..|+..+....++.|+++|+||+|+.+.             ..++...++...+. +++++||++|.|
T Consensus        81 d~~~~~s~~~~-~~~~~~i~~~~~~~p~ivv~nK~Dl~~~-------------~~~~~~~~~~~~~~-~~~~~Sa~~~~g  145 (161)
T cd04124          81 DVTRKITYKNL-SKWYEELREYRPEIPCIVVANKIDLDPS-------------VTQKKFNFAEKHNL-PLYYVSAADGTN  145 (161)
T ss_pred             ECCCHHHHHHH-HHHHHHHHHhCCCCcEEEEEECccCchh-------------HHHHHHHHHHHcCC-eEEEEeCCCCCC
Confidence            99999999998 7899999877778999999999998432             12344566676776 899999999999


Q ss_pred             HHHHHHHHHHHHcCC
Q 036449          166 VKAVFDAAIRVVLQP  180 (197)
Q Consensus       166 i~~l~~~i~~~~~~~  180 (197)
                      ++++|+.+++.+.++
T Consensus       146 v~~l~~~l~~~~~~~  160 (161)
T cd04124         146 VVKLFQDAIKLAVSY  160 (161)
T ss_pred             HHHHHHHHHHHHHhc
Confidence            999999999987764

RabL2 (Rab-like2) subfamily. RabL2s are novel Rab proteins identified recently which display features that are distinct from other Rabs, and have been termed Rab-like. RabL2 contains RabL2a and RabL2b, two very similar Rab proteins that share 98% sequence identity in humans. RabL2b maps to the subtelomeric region of chromosome 22q13.3 and RabL2a maps to 2q13, a region that suggests it is also a subtelomeric gene. Both genes are believed to be expressed ubiquitously, suggesting that RabL2s are the first example of duplicated genes in human proximal subtelomeric regions that are both expressed actively. Like other Rab-like proteins, RabL2s lack a prenylation site at the C-terminus. The specific functions of RabL2a and RabL2b remain unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-b

>cd04129 Rho2 Rho2 subfamily

Probab=100.00  E-value=6.3e-34  Score=199.93  Aligned_cols=178  Identities=47%  Similarity=0.771  Sum_probs=148.0

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhhCCCCCCCCCceeeeeeEEEEECCeEEEEEEEeCCCccccccccccCcCCCcEEEEEEe
Q 036449            7 IKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFS   86 (197)
Q Consensus         7 ~~i~v~G~~~~GKstli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d   86 (197)
                      .||+++|++|+|||||++++..+.+...+.++....+...+.+++..+.+.+||++|++.+....+..+.++++++++||
T Consensus         2 ~Ki~ivG~~g~GKStLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~a~~~llv~~   81 (187)
T cd04129           2 RKLVIVGDGACGKTSLLSVFTLGEFPEEYHPTVFENYVTDCRVDGKPVQLALWDTAGQEEYERLRPLSYSKAHVILIGFA   81 (187)
T ss_pred             eEEEEECCCCCCHHHHHHHHHhCCCCcccCCcccceEEEEEEECCEEEEEEEEECCCChhccccchhhcCCCCEEEEEEE
Confidence            58999999999999999999988887777777766666666778878889999999999888777778899999999999


Q ss_pred             CCCchhHHHHHHHHHHHHhhhCCCCCEEEEeeCCcccCCcccccCCCCCCcccHHHHHHHHHHhCCCceEEeccCCCCCH
Q 036449           87 LISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQQNV  166 (197)
Q Consensus        87 ~~~~~s~~~~~~~~~~~i~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i  166 (197)
                      +++.++++.+...|+..+....++.|+++|+||+|+.+...........+.+..+++..+++..+..+|+++||++|.|+
T Consensus        82 i~~~~s~~~~~~~~~~~i~~~~~~~piilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v  161 (187)
T cd04129          82 VDTPDSLENVRTKWIEEVRRYCPNVPVILVGLKKDLRQDAVAKEEYRTQRFVPIQQGKRVAKEIGAKKYMECSALTGEGV  161 (187)
T ss_pred             CCCHHHHHHHHHHHHHHHHHhCCCCCEEEEeeChhhhhCcccccccccCCcCCHHHHHHHHHHhCCcEEEEccCCCCCCH
Confidence            99999999996689999988778899999999999864321111111234456678889999998768999999999999


Q ss_pred             HHHHHHHHHHHcCCCchh
Q 036449          167 KAVFDAAIRVVLQPPKTK  184 (197)
Q Consensus       167 ~~l~~~i~~~~~~~~~~~  184 (197)
                      +++|+++.+.+...+++.
T Consensus       162 ~~~f~~l~~~~~~~~~~~  179 (187)
T cd04129         162 DDVFEAATRAALLVRKSE  179 (187)
T ss_pred             HHHHHHHHHHHhcccCcc
Confidence            999999999887765443

Rho2 is a fungal GTPase that plays a role in cell morphogenesis, control of cell wall integrity, control of growth polarity, and maintenance of growth direction. Rho2 activates the protein kinase C homolog Pck2, and Pck2 controls Mok1, the major (1-3) alpha-D-glucan synthase. Together with Rho1 (RhoA), Rho2 regulates the construction of the cell wall. Unlike Rho1, Rho2 is not an essential protein, but its overexpression is lethal. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for proper intracellular localization via membrane attachment. As with other Rho family GTPases, the GDP/GTP cycling is regulated by GEFs (guanine nucleotide exchange factors), GAPs (GTPase-activating proteins) and GDIs (guanine nucleotide dissociation inhibitors).

>cd00877 Ran Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases

Probab=100.00  E-value=4.7e-34  Score=196.90  Aligned_cols=160  Identities=31%  Similarity=0.522  Sum_probs=136.1

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhhCCCCCCCCCceeeee-eEEEEECCeEEEEEEEeCCCccccccccccCcCCCcEEEEEE
Q 036449            7 IKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNF-SANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAF   85 (197)
Q Consensus         7 ~~i~v~G~~~~GKstli~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~   85 (197)
                      +||+++|++|||||||++++..+.+...+.+|.+..+ ...+..++..+.+.+||+||++.+..++..++..+|++|+||
T Consensus         1 ~ki~vvG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~   80 (166)
T cd00877           1 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLDFHTNRGKIRFNVWDTAGQEKFGGLRDGYYIGGQCAIIMF   80 (166)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCCChhhccccHHHhcCCCEEEEEE
Confidence            5899999999999999999999988888888885444 344556777899999999999999998888999999999999


Q ss_pred             eCCCchhHHHHHHHHHHHHhhhCCCCCEEEEeeCCcccCCcccccCCCCCCcccHHHHHHHHHHhCCCceEEeccCCCCC
Q 036449           86 SLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQQN  165 (197)
Q Consensus        86 d~~~~~s~~~~~~~~~~~i~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~  165 (197)
                      |++++++++.+ ..|+..+....++.|+++|+||+|+....           .. .+..++++..+. +++++||++|.|
T Consensus        81 d~~~~~s~~~~-~~~~~~i~~~~~~~piiiv~nK~Dl~~~~-----------~~-~~~~~~~~~~~~-~~~e~Sa~~~~~  146 (166)
T cd00877          81 DVTSRVTYKNV-PNWHRDLVRVCGNIPIVLCGNKVDIKDRK-----------VK-AKQITFHRKKNL-QYYEISAKSNYN  146 (166)
T ss_pred             ECCCHHHHHHH-HHHHHHHHHhCCCCcEEEEEEchhccccc-----------CC-HHHHHHHHHcCC-EEEEEeCCCCCC
Confidence            99999999998 78999998877789999999999997322           22 234456666555 899999999999


Q ss_pred             HHHHHHHHHHHHcCC
Q 036449          166 VKAVFDAAIRVVLQP  180 (197)
Q Consensus       166 i~~l~~~i~~~~~~~  180 (197)
                      ++++|++|++.+.+.
T Consensus       147 v~~~f~~l~~~~~~~  161 (166)
T cd00877         147 FEKPFLWLARKLLGN  161 (166)
T ss_pred             hHHHHHHHHHHHHhc
Confidence            999999999988764

Ran GTPase is involved in diverse biological functions, such as nuclear transport, spindle formation during mitosis, DNA replication, and cell division. Among the Ras superfamily, Ran is a unique small G protein. It does not have a lipid modification motif at the C-terminus to bind to the membrane, which is often observed within the Ras superfamily. Ran may therefore interact with a wide range of proteins in various intracellular locations. Like other GTPases, Ran exists in GTP- and GDP-bound conformations that interact differently with effectors. Conversion between these forms and the assembly or disassembly of effector complexes requires the interaction of regulator proteins. The intrinsic GTPase activity of Ran is very low, but it is greatly stimulated by a GTPase-activating protein (RanGAP1) located in the cytoplasm. By contrast, RCC1, a guanine nucleotide exchange factor that generates RanGTP, is

>cd04106 Rab23_lke Rab23-like subfamily

Probab=100.00  E-value=2.4e-34  Score=197.73  Aligned_cols=158  Identities=32%  Similarity=0.586  Sum_probs=139.1

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhhCCCCCCCCCceeeee-eEEEEEC--CeEEEEEEEeCCCccccccccccCcCCCcEEEE
Q 036449            7 IKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNF-SANVVVN--GSTVNLGLWDTAGQEDYNRLRPLSYRGADVFIL   83 (197)
Q Consensus         7 ~~i~v~G~~~~GKstli~~~~~~~~~~~~~~~~~~~~-~~~~~~~--~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~   83 (197)
                      +||+++|.+|+|||||++++..+.+...+.++.+..+ ...+.+.  +..+.+++||+||++++...+..+++++|++++
T Consensus         1 ~kv~~vG~~~~GKTsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~v~   80 (162)
T cd04106           1 IKVIVVGNGNVGKSSMIQRFVKGIFTKDYKKTIGVDFLEKQIFLRQSDEDVRLMLWDTAGQEEFDAITKAYYRGAQACIL   80 (162)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcEEEEEEEEEEEEcCCCCEEEEEEeeCCchHHHHHhHHHHhcCCCEEEE
Confidence            5899999999999999999999998888888886544 4455555  677899999999999999999999999999999


Q ss_pred             EEeCCCchhHHHHHHHHHHHHhhhCCCCCEEEEeeCCcccCCcccccCCCCCCcccHHHHHHHHHHhCCCceEEeccCCC
Q 036449           84 AFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQ  163 (197)
Q Consensus        84 v~d~~~~~s~~~~~~~~~~~i~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~  163 (197)
                      |||++++++++.+ ..|+..+....++.|+++|+||+|+.....          +..+++..+++.++. +++++||+++
T Consensus        81 v~d~~~~~s~~~l-~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~----------v~~~~~~~~~~~~~~-~~~~~Sa~~~  148 (162)
T cd04106          81 VFSTTDRESFEAI-ESWKEKVEAECGDIPMVLVQTKIDLLDQAV----------ITNEEAEALAKRLQL-PLFRTSVKDD  148 (162)
T ss_pred             EEECCCHHHHHHH-HHHHHHHHHhCCCCCEEEEEEChhcccccC----------CCHHHHHHHHHHcCC-eEEEEECCCC
Confidence            9999999999998 789888887778999999999999976543          567788889999988 8999999999


Q ss_pred             CCHHHHHHHHHHH
Q 036449          164 QNVKAVFDAAIRV  176 (197)
Q Consensus       164 ~~i~~l~~~i~~~  176 (197)
                      .|++++|++|.+.
T Consensus       149 ~~v~~l~~~l~~~  161 (162)
T cd04106         149 FNVTELFEYLAEK  161 (162)
T ss_pred             CCHHHHHHHHHHh
Confidence            9999999999764

Rab23 is a member of the Rab family of small GTPases. In mouse, Rab23 has been shown to function as a negative regulator in the sonic hedgehog (Shh) signalling pathway. Rab23 mediates the activity of Gli2 and Gli3, transcription factors that regulate Shh signaling in the spinal cord, primarily by preventing Gli2 activation in the absence of Shh ligand. Rab23 also regulates a step in the cytoplasmic signal transduction pathway that mediates the effect of Smoothened (one of two integral membrane proteins that are essential components of the Shh signaling pathway in vertebrates). In humans, Rab23 is expressed in the retina. Mice contain an isoform that shares 93% sequence identity with the human Rab23 and an alternative splicing isoform that is specific to the brain. This isoform causes the murine open brain phenotype, indicating it may have a role in the development of the central nervous system. GTPase activating proteins (GAPs) interact with G

>cd04118 Rab24 Rab24 subfamily

Probab=100.00  E-value=6e-34  Score=201.11  Aligned_cols=166  Identities=33%  Similarity=0.537  Sum_probs=141.8

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhhCCCCC-CCCCceeeee-eEEEEECCeEEEEEEEeCCCccccccccccCcCCCcEEEEE
Q 036449            7 IKCVTVGDGAVGKTCLLISYTSNTFPT-DYVPTVFDNF-SANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILA   84 (197)
Q Consensus         7 ~~i~v~G~~~~GKstli~~~~~~~~~~-~~~~~~~~~~-~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v   84 (197)
                      +||+++|.+|+|||||++++..+.+.. .+.+|.+..+ ...+.+++..+.+.+||+||++++..++..++.++|++++|
T Consensus         1 ~ki~vvG~~~vGKSsLi~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~iilv   80 (193)
T cd04118           1 VKVVMLGKESVGKTSLVERYVHHRFLVGPYQNTIGAAFVAKRMVVGERVVTLGIWDTAGSERYEAMSRIYYRGAKAAIVC   80 (193)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCcCCcCcccceeeEEEEEEEEECCEEEEEEEEECCCchhhhhhhHhhcCCCCEEEEE
Confidence            589999999999999999999998874 5777776555 45677888889999999999999999998899999999999


Q ss_pred             EeCCCchhHHHHHHHHHHHHhhhCCCCCEEEEeeCCcccCCcccccCCCCCCcccHHHHHHHHHHhCCCceEEeccCCCC
Q 036449           85 FSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQQ  164 (197)
Q Consensus        85 ~d~~~~~s~~~~~~~~~~~i~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~  164 (197)
                      ||++++.+++.+ ..|+..+....++.|+++|+||+|+.....      ....+..+++..++...+. +++++||+++.
T Consensus        81 ~d~~~~~s~~~~-~~~~~~i~~~~~~~piilv~nK~Dl~~~~~------~~~~v~~~~~~~~~~~~~~-~~~~~Sa~~~~  152 (193)
T cd04118          81 YDLTDSSSFERA-KFWVKELQNLEEHCKIYLCGTKSDLIEQDR------SLRQVDFHDVQDFADEIKA-QHFETSSKTGQ  152 (193)
T ss_pred             EECCCHHHHHHH-HHHHHHHHhcCCCCCEEEEEEccccccccc------ccCccCHHHHHHHHHHcCC-eEEEEeCCCCC
Confidence            999999999998 789998887767899999999999854321      1223556677888888887 89999999999


Q ss_pred             CHHHHHHHHHHHHcCC
Q 036449          165 NVKAVFDAAIRVVLQP  180 (197)
Q Consensus       165 ~i~~l~~~i~~~~~~~  180 (197)
                      |++++|+++++.+...
T Consensus       153 gv~~l~~~i~~~~~~~  168 (193)
T cd04118         153 NVDELFQKVAEDFVSR  168 (193)
T ss_pred             CHHHHHHHHHHHHHHh
Confidence            9999999999988664

Rab24 is distinct from other Rabs in several ways. It exists primarily in the GTP-bound state, having a low intrinsic GTPase activity; it is not efficiently geranyl-geranylated at the C-terminus; it does not form a detectable complex with Rab GDP-dissociation inhibitors (GDIs); and it has recently been shown to undergo tyrosine phosphorylation when overexpressed in vitro. The specific function of Rab24 still remains unknown. It is found in a transport route between ER-cis-Golgi and late endocytic compartments. It is putatively involved in an autophagic pathway, possibly directing misfolded proteins in the ER to degradative pathways. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilita

>cd01864 Rab19 Rab19 subfamily

Probab=100.00  E-value=3.7e-34  Score=197.40  Aligned_cols=162  Identities=31%  Similarity=0.542  Sum_probs=140.0

Q ss_pred             ceeEEEEEcCCCCCHHHHHHHHhhCCCCCCCCCceeee-eeEEEEECCeEEEEEEEeCCCccccccccccCcCCCcEEEE
Q 036449            5 RFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDN-FSANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFIL   83 (197)
Q Consensus         5 ~~~~i~v~G~~~~GKstli~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~   83 (197)
                      +.+||+++|++|+|||||++++..+.+...+.++.+.. ....+.+++..+.+++||+||++.+...+..+++.+|++++
T Consensus         2 ~~~kv~vvG~~~~GKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~ll   81 (165)
T cd01864           2 FLFKIILIGDSNVGKTCVVQRFKSGTFSERQGNTIGVDFTMKTLEIEGKRVKLQIWDTAGQERFRTITQSYYRSANGAII   81 (165)
T ss_pred             ceeEEEEECCCCCCHHHHHHHHhhCCCcccCCCccceEEEEEEEEECCEEEEEEEEECCChHHHHHHHHHHhccCCEEEE
Confidence            46899999999999999999999988887777777543 34566777877889999999999999988899999999999


Q ss_pred             EEeCCCchhHHHHHHHHHHHHhhhC-CCCCEEEEeeCCcccCCcccccCCCCCCcccHHHHHHHHHHhCCCceEEeccCC
Q 036449           84 AFSLISKASYENVSKKWIPELKHYA-PGVPIILVGTKLDLRDDKQFFIDHPGAVPISTAQGEELRKLIGAPAYIECSSKT  162 (197)
Q Consensus        84 v~d~~~~~s~~~~~~~~~~~i~~~~-~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~  162 (197)
                      |||++++++++.+ ..|+..+.... ++.|+++|+||+|+.+.+.          ...+++..+++..+...++++||++
T Consensus        82 v~d~~~~~s~~~~-~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~----------~~~~~~~~~~~~~~~~~~~e~Sa~~  150 (165)
T cd01864          82 AYDITRRSSFESV-PHWIEEVEKYGASNVVLLLIGNKCDLEEQRE----------VLFEEACTLAEKNGMLAVLETSAKE  150 (165)
T ss_pred             EEECcCHHHHHhH-HHHHHHHHHhCCCCCcEEEEEECcccccccc----------cCHHHHHHHHHHcCCcEEEEEECCC
Confidence            9999999999998 78988887654 6899999999999976543          5667788898888876799999999


Q ss_pred             CCCHHHHHHHHHHHH
Q 036449          163 QQNVKAVFDAAIRVV  177 (197)
Q Consensus       163 ~~~i~~l~~~i~~~~  177 (197)
                      |.|++++|+++.+.+
T Consensus       151 ~~~v~~~~~~l~~~l  165 (165)
T cd01864         151 SQNVEEAFLLMATEL  165 (165)
T ss_pred             CCCHHHHHHHHHHhC
Confidence            999999999998753

Rab19 proteins are associated with Golgi stacks. Similarity analysis indicated that Rab41 is closely related to Rab19. However, the function of these Rabs is not yet chracterized. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.

>cd04142 RRP22 RRP22 subfamily

Probab=100.00  E-value=7.1e-34  Score=200.74  Aligned_cols=179  Identities=23%  Similarity=0.416  Sum_probs=140.0

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhhCCCCCCCCCceee-eeeEEEEECCeEEEEEEEeCCCccccccc--------cccCcCC
Q 036449            7 IKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFD-NFSANVVVNGSTVNLGLWDTAGQEDYNRL--------RPLSYRG   77 (197)
Q Consensus         7 ~~i~v~G~~~~GKstli~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~i~D~~G~~~~~~~--------~~~~~~~   77 (197)
                      +||+++|.+|||||||++++..+.+...+.|+.+. .+...+.+++..+.+++|||||...+...        ....+..
T Consensus         1 ~kI~ivG~~~vGKTsLi~~~~~~~f~~~~~pt~~~~~~~~~i~~~~~~~~l~i~Dt~G~~~~~~~~~~e~~~~~~~~~~~   80 (198)
T cd04142           1 VRVAVLGAPGVGKTAIVRQFLAQEFPEEYIPTEHRRLYRPAVVLSGRVYDLHILDVPNMQRYPGTAGQEWMDPRFRGLRN   80 (198)
T ss_pred             CEEEEECCCCCcHHHHHHHHHcCCCCcccCCccccccceeEEEECCEEEEEEEEeCCCcccCCccchhHHHHHHHhhhcc
Confidence            58999999999999999999999998888888853 34455667888899999999997654311        2234788


Q ss_pred             CcEEEEEEeCCCchhHHHHHHHHHHHHhhh----CCCCCEEEEeeCCcccCCcccccCCCCCCcccHHHHHHHHH-HhCC
Q 036449           78 ADVFILAFSLISKASYENVSKKWIPELKHY----APGVPIILVGTKLDLRDDKQFFIDHPGAVPISTAQGEELRK-LIGA  152 (197)
Q Consensus        78 ~~~~i~v~d~~~~~s~~~~~~~~~~~i~~~----~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~  152 (197)
                      +|++|+|||++++++++.+ ..|+..+...    .+++|+++|+||+|+...+.          +..++++.++. ..++
T Consensus        81 ad~iilv~D~~~~~S~~~~-~~~~~~i~~~~~~~~~~~piiivgNK~Dl~~~~~----------~~~~~~~~~~~~~~~~  149 (198)
T cd04142          81 SRAFILVYDICSPDSFHYV-KLLRQQILETRPAGNKEPPIVVVGNKRDQQRHRF----------APRHVLSVLVRKSWKC  149 (198)
T ss_pred             CCEEEEEEECCCHHHHHHH-HHHHHHHHHhcccCCCCCCEEEEEECcccccccc----------ccHHHHHHHHHHhcCC
Confidence            9999999999999999998 6777776654    25799999999999966433          45566666655 4466


Q ss_pred             CceEEeccCCCCCHHHHHHHHHHHHcCCCchhh-----hhhccccccccC
Q 036449          153 PAYIECSSKTQQNVKAVFDAAIRVVLQPPKTKK-----KKNKAQKACSIL  197 (197)
Q Consensus       153 ~~~~~~sa~~~~~i~~l~~~i~~~~~~~~~~~~-----~~~~~~~~c~~~  197 (197)
                       +|+++||++|.|++++|+.+++.+..+.....     +..--...|+||
T Consensus       150 -~~~e~Sak~g~~v~~lf~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  198 (198)
T cd04142         150 -GYLECSAKYNWHILLLFKELLISATTRGRSTHPALRLQGALHRERCSIM  198 (198)
T ss_pred             -cEEEecCCCCCCHHHHHHHHHHHhhccCCCccHHHHHHHHHhhcCcccC
Confidence             89999999999999999999998887654432     233344567776

RRP22 (Ras-related protein on chromosome 22) subfamily consists of proteins that inhibit cell growth and promote caspase-independent cell death. Unlike most Ras proteins, RRP22 is down-regulated in many human tumor cells due to promoter methylation. RRP22 localizes to the nucleolus in a GTP-dependent manner, suggesting a novel function in modulating transport of nucleolar components. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Like most Ras family proteins, RRP22 is farnesylated.

>cd04119 RJL RJL (RabJ-Like) subfamily

Probab=100.00  E-value=5e-34  Score=197.05  Aligned_cols=160  Identities=24%  Similarity=0.546  Sum_probs=139.6

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhhCCCCCCCCCceeeee-eEEEEECCeEEEEEEEeCCCccccccccccCcCCCcEEEEEE
Q 036449            7 IKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNF-SANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAF   85 (197)
Q Consensus         7 ~~i~v~G~~~~GKstli~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~   85 (197)
                      +||+++|++|||||||++++..+.+...+.++.+..+ ...+.+++..+.+++||+||++.+..++..+++.+|++|+||
T Consensus         1 ~ki~~vG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~   80 (168)
T cd04119           1 IKVISMGNSGVGKSCIIKRYCEGRFVSKYLPTIGIDYGVKKVSVRNKEVRVNFFDLSGHPEYLEVRNEFYKDTQGVLLVY   80 (168)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceeEEEEEEEECCeEEEEEEEECCccHHHHHHHHHHhccCCEEEEEE
Confidence            5899999999999999999999999888888886554 455667788899999999999999999999999999999999


Q ss_pred             eCCCchhHHHHHHHHHHHHhhhC------CCCCEEEEeeCCcccCCcccccCCCCCCcccHHHHHHHHHHhCCCceEEec
Q 036449           86 SLISKASYENVSKKWIPELKHYA------PGVPIILVGTKLDLRDDKQFFIDHPGAVPISTAQGEELRKLIGAPAYIECS  159 (197)
Q Consensus        86 d~~~~~s~~~~~~~~~~~i~~~~------~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s  159 (197)
                      |++++.+++.+ ..|+..+....      .+.|+++|+||+|+.+...          .+.++++.++...+. +++++|
T Consensus        81 D~~~~~s~~~~-~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~----------~~~~~~~~~~~~~~~-~~~~~S  148 (168)
T cd04119          81 DVTDRQSFEAL-DSWLKEMKQEGGPHGNMENIVVVVCANKIDLTKHRA----------VSEDEGRLWAESKGF-KYFETS  148 (168)
T ss_pred             ECCCHHHHHhH-HHHHHHHHHhccccccCCCceEEEEEEchhcccccc----------cCHHHHHHHHHHcCC-eEEEEE
Confidence            99999999998 78888887654      3689999999999964332          567777788888886 899999


Q ss_pred             cCCCCCHHHHHHHHHHHHc
Q 036449          160 SKTQQNVKAVFDAAIRVVL  178 (197)
Q Consensus       160 a~~~~~i~~l~~~i~~~~~  178 (197)
                      |+++.|++++|++|.+.+.
T Consensus       149 a~~~~gi~~l~~~l~~~l~  167 (168)
T cd04119         149 ACTGEGVNEMFQTLFSSIV  167 (168)
T ss_pred             CCCCCCHHHHHHHHHHHHh
Confidence            9999999999999998775

RJLs are found in many protists and as chimeras with C-terminal DNAJ domains in deuterostome metazoa. They are not found in plants, fungi, and protostome metazoa, suggesting a horizontal gene transfer between protists and deuterostome metazoa. RJLs lack any known membrane targeting signal and contain a degenerate phosphate/magnesium-binding 3 (PM3) motif, suggesting an impaired ability to hydrolyze GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization.

>cd01870 RhoA_like RhoA-like subfamily

Probab=100.00  E-value=1.6e-33  Score=195.92  Aligned_cols=171  Identities=51%  Similarity=0.931  Sum_probs=144.4

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhhCCCCCCCCCceeeeeeEEEEECCeEEEEEEEeCCCccccccccccCcCCCcEEEEEEe
Q 036449            7 IKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFS   86 (197)
Q Consensus         7 ~~i~v~G~~~~GKstli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d   86 (197)
                      .||+++|++|||||||++++..+.+...+.++....+...+.+++..+.+.+|||||++.+...+..++.++|++++|||
T Consensus         2 ~ki~iiG~~~~GKTsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~~   81 (175)
T cd01870           2 KKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFS   81 (175)
T ss_pred             cEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccccceEEEEEECCEEEEEEEEeCCCchhhhhccccccCCCCEEEEEEE
Confidence            58999999999999999999999998888888877766677788888999999999999999888889999999999999


Q ss_pred             CCCchhHHHHHHHHHHHHhhhCCCCCEEEEeeCCcccCCcccc--cCCCCCCcccHHHHHHHHHHhCCCceEEeccCCCC
Q 036449           87 LISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLRDDKQFF--IDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQQ  164 (197)
Q Consensus        87 ~~~~~s~~~~~~~~~~~i~~~~~~~~~ivv~nK~D~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~  164 (197)
                      ++++++++.+...|...+....++.|+++|+||+|+.+.....  ........+...++++++...+..++++|||++|.
T Consensus        82 ~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~i~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~~~  161 (175)
T cd01870          82 IDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANKIGAFGYMECSAKTKE  161 (175)
T ss_pred             CCCHHHHHHHHHHHHHHHHhhCCCCCEEEEeeChhcccChhhhhhhhhccCCCccHHHHHHHHHHcCCcEEEEeccccCc
Confidence            9999999998667888888766789999999999986532210  01111234556788889988887689999999999


Q ss_pred             CHHHHHHHHHHHH
Q 036449          165 NVKAVFDAAIRVV  177 (197)
Q Consensus       165 ~i~~l~~~i~~~~  177 (197)
                      |++++|.++.+.+
T Consensus       162 ~v~~lf~~l~~~~  174 (175)
T cd01870         162 GVREVFEMATRAA  174 (175)
T ss_pred             CHHHHHHHHHHHh
Confidence            9999999998765

The RhoA subfamily consists of RhoA, RhoB, and RhoC. RhoA promotes the formation of stress fibers and focal adhesions, regulating cell shape, attachment, and motility. RhoA can bind to multiple effector proteins, thereby triggering different downstream responses. In many cell types, RhoA mediates local assembly of the contractile ring, which is necessary for cytokinesis. RhoA is vital for muscle contraction; in vascular smooth muscle cells, RhoA plays a key role in cell contraction, differentiation, migration, and proliferation. RhoA activities appear to be elaborately regulated in a time- and space-dependent manner to control cytoskeletal changes. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. RhoA and RhoC are observed only in geranyl

>cd04108 Rab36_Rab34 Rab34/Rab36 subfamily

Probab=100.00  E-value=8.8e-34  Score=196.20  Aligned_cols=162  Identities=32%  Similarity=0.548  Sum_probs=138.8

Q ss_pred             EEEEEcCCCCCHHHHHHHHhhCCCCCCCCCceeeee-eEEEEECCeEEEEEEEeCCCccccccccccCcCCCcEEEEEEe
Q 036449            8 KCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNF-SANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFS   86 (197)
Q Consensus         8 ~i~v~G~~~~GKstli~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d   86 (197)
                      ||+++|.+|||||||++++..+.+...+.+|.+..+ ...+.+++..+.+++||+||+++|..++..+++++|++++|||
T Consensus         2 ki~ivG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~~ilv~d   81 (170)
T cd04108           2 KVIVVGDLSVGKTCLINRFCKDVFDKNYKATIGVDFEMERFEILGVPFSLQLWDTAGQERFKCIASTYYRGAQAIIIVFD   81 (170)
T ss_pred             EEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEeCCChHHHHhhHHHHhcCCCEEEEEEE
Confidence            799999999999999999999999999999986554 4566778888999999999999999999999999999999999


Q ss_pred             CCCchhHHHHHHHHHHHHhhh-CC-CCCEEEEeeCCcccCCcccccCCCCCCcccHHHHHHHHHHhCCCceEEeccCCCC
Q 036449           87 LISKASYENVSKKWIPELKHY-AP-GVPIILVGTKLDLRDDKQFFIDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQQ  164 (197)
Q Consensus        87 ~~~~~s~~~~~~~~~~~i~~~-~~-~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~  164 (197)
                      ++++++++.+ ..|+..+... .+ +.|+++|+||+|+.+...        .....+++..+++.++. +++++||++|.
T Consensus        82 ~~~~~s~~~~-~~~~~~~~~~~~~~~~~iilVgnK~Dl~~~~~--------~~~~~~~~~~~~~~~~~-~~~e~Sa~~g~  151 (170)
T cd04108          82 LTDVASLEHT-RQWLEDALKENDPSSVLLFLVGTKKDLSSPAQ--------YALMEQDAIKLAAEMQA-EYWSVSALSGE  151 (170)
T ss_pred             CcCHHHHHHH-HHHHHHHHHhcCCCCCeEEEEEEChhcCcccc--------ccccHHHHHHHHHHcCC-eEEEEECCCCC
Confidence            9999999998 7898877554 34 577999999999865321        11345667788888887 89999999999


Q ss_pred             CHHHHHHHHHHHHcC
Q 036449          165 NVKAVFDAAIRVVLQ  179 (197)
Q Consensus       165 ~i~~l~~~i~~~~~~  179 (197)
                      |++++|+.|++.+.+
T Consensus       152 ~v~~lf~~l~~~~~~  166 (170)
T cd04108         152 NVREFFFRVAALTFE  166 (170)
T ss_pred             CHHHHHHHHHHHHHH
Confidence            999999999998754

Rab34, found primarily in the Golgi, interacts with its effector, Rab-interacting lysosomal protein (RILP). This enables its participation in microtubular dynenin-dynactin-mediated repositioning of lysosomes from the cell periphery to the Golgi. A Rab34 (Rah) isoform that lacks the consensus GTP-binding region has been identified in mice. This isoform is associated with membrane ruffles and promotes macropinosome formation. Rab36 has been mapped to human chromosome 22q11.2, a region that is homozygously deleted in malignant rhabdoid tumors (MRTs). However, experimental assessments do not implicate Rab36 as a tumor suppressor that would enable tumor formation through a loss-of-function mechanism. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further re

>cd04103 Centaurin_gamma Centaurin gamma

Probab=100.00  E-value=1.1e-33  Score=193.34  Aligned_cols=155  Identities=27%  Similarity=0.372  Sum_probs=129.0

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhhCCCCCCCCCceeeeeeEEEEECCeEEEEEEEeCCCccccccccccCcCCCcEEEEEEe
Q 036449            7 IKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFS   86 (197)
Q Consensus         7 ~~i~v~G~~~~GKstli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d   86 (197)
                      +||+++|++|||||||+.++..+.+...+.++ ...+...+.+++..+.+++||++|++..     .++.++|++++|||
T Consensus         1 ~ki~vvG~~gvGKTsli~~~~~~~f~~~~~~~-~~~~~~~i~~~~~~~~l~i~D~~g~~~~-----~~~~~~~~~ilv~d   74 (158)
T cd04103           1 LKLGIVGNLQSGKSALVHRYLTGSYVQLESPE-GGRFKKEVLVDGQSHLLLIRDEGGAPDA-----QFASWVDAVIFVFS   74 (158)
T ss_pred             CEEEEECCCCCcHHHHHHHHHhCCCCCCCCCC-ccceEEEEEECCEEEEEEEEECCCCCch-----hHHhcCCEEEEEEE
Confidence            58999999999999999999999887776555 3444567788888889999999999752     35678999999999


Q ss_pred             CCCchhHHHHHHHHHHHHhhhC--CCCCEEEEeeCCcccCCcccccCCCCCCcccHHHHHHHHHHhCCCceEEeccCCCC
Q 036449           87 LISKASYENVSKKWIPELKHYA--PGVPIILVGTKLDLRDDKQFFIDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQQ  164 (197)
Q Consensus        87 ~~~~~s~~~~~~~~~~~i~~~~--~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~  164 (197)
                      ++++++|+.+ ..|+..+....  +++|+++|+||.|+....        .+.+..++++++++..+...|++|||+++.
T Consensus        75 ~~~~~sf~~~-~~~~~~i~~~~~~~~~piilvgnK~Dl~~~~--------~~~v~~~~~~~~~~~~~~~~~~e~SAk~~~  145 (158)
T cd04103          75 LENEASFQTV-YNLYHQLSSYRNISEIPLILVGTQDAISESN--------PRVIDDARARQLCADMKRCSYYETCATYGL  145 (158)
T ss_pred             CCCHHHHHHH-HHHHHHHHHhcCCCCCCEEEEeeHHHhhhcC--------CcccCHHHHHHHHHHhCCCcEEEEecCCCC
Confidence            9999999998 67888887665  679999999999985321        233777888899987753489999999999


Q ss_pred             CHHHHHHHHHHH
Q 036449          165 NVKAVFDAAIRV  176 (197)
Q Consensus       165 ~i~~l~~~i~~~  176 (197)
                      ||+++|..+++.
T Consensus       146 ~i~~~f~~~~~~  157 (158)
T cd04103         146 NVERVFQEAAQK  157 (158)
T ss_pred             CHHHHHHHHHhh
Confidence            999999999865

The centaurins (alpha, beta, gamma, and delta) are large, multi-domain proteins that all contain an ArfGAP domain and ankyrin repeats, and in some cases, numerous additional domains. Centaurin gamma contains an additional GTPase domain near its N-terminus. The specific function of this GTPase domain has not been well characterized, but centaurin gamma 2 (CENTG2) may play a role in the development of autism. Centaurin gamma 1 is also called PIKE (phosphatidyl inositol (PI) 3-kinase enhancer) and centaurin gamma 2 is also known as AGAP (ArfGAP protein with a GTPase-like domain, ankyrin repeats and a Pleckstrin homology domain) or GGAP. Three isoforms of PIKE have been identified. PIKE-S (short) and PIKE-L (long) are brain-specific isoforms, with PIKE-S restricted to the nucleus and PIKE-L found in multiple cellular compartments. A third isoform, PIKE-A was identified in human glioblastoma brain cancers and has been found in various tissues.

>KOG0088 consensus GTPase Rab21, small G protein superfamily [General function prediction only]

Probab=100.00  E-value=2.8e-35  Score=191.25  Aligned_cols=165  Identities=30%  Similarity=0.608  Sum_probs=150.5

Q ss_pred             ceeEEEEEcCCCCCHHHHHHHHhhCCCCCCCCCcee-eeeeEEEEECCeEEEEEEEeCCCccccccccccCcCCCcEEEE
Q 036449            5 RFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVF-DNFSANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFIL   83 (197)
Q Consensus         5 ~~~~i~v~G~~~~GKstli~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~   83 (197)
                      -.+||+++|..-+|||||+-++..++|+.....|.. ......+.+.+....+.||||+||++|..+-+.|++.++++++
T Consensus        12 ~~FK~VLLGEGCVGKtSLVLRy~EnkFn~kHlsTlQASF~~kk~n~ed~ra~L~IWDTAGQErfHALGPIYYRgSnGalL   91 (218)
T KOG0088|consen   12 FKFKIVLLGEGCVGKTSLVLRYVENKFNCKHLSTLQASFQNKKVNVEDCRADLHIWDTAGQERFHALGPIYYRGSNGALL   91 (218)
T ss_pred             eeeEEEEEcCCccchhHHHHHHHHhhcchhhHHHHHHHHhhcccccccceeeeeeeeccchHhhhccCceEEeCCCceEE
Confidence            458999999999999999999999999998888874 4446777888888999999999999999999999999999999


Q ss_pred             EEeCCCchhHHHHHHHHHHHHhhhC-CCCCEEEEeeCCcccCCcccccCCCCCCcccHHHHHHHHHHhCCCceEEeccCC
Q 036449           84 AFSLISKASYENVSKKWIPELKHYA-PGVPIILVGTKLDLRDDKQFFIDHPGAVPISTAQGEELRKLIGAPAYIECSSKT  162 (197)
Q Consensus        84 v~d~~~~~s~~~~~~~~~~~i~~~~-~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~  162 (197)
                      |||++|++||+.+ ..|...++... ..+-++||+||+|+.+++.          ++.+++..+++.-|+ .|+++||++
T Consensus        92 VyDITDrdSFqKV-KnWV~Elr~mlGnei~l~IVGNKiDLEeeR~----------Vt~qeAe~YAesvGA-~y~eTSAk~  159 (218)
T KOG0088|consen   92 VYDITDRDSFQKV-KNWVLELRTMLGNEIELLIVGNKIDLEEERQ----------VTRQEAEAYAESVGA-LYMETSAKD  159 (218)
T ss_pred             EEeccchHHHHHH-HHHHHHHHHHhCCeeEEEEecCcccHHHhhh----------hhHHHHHHHHHhhch-hheeccccc
Confidence            9999999999999 89999998877 5688899999999998887          899999999999999 899999999


Q ss_pred             CCCHHHHHHHHHHHHcCCC
Q 036449          163 QQNVKAVFDAAIRVVLQPP  181 (197)
Q Consensus       163 ~~~i~~l~~~i~~~~~~~~  181 (197)
                      +.||.++|+.+.+...++.
T Consensus       160 N~Gi~elFe~Lt~~MiE~~  178 (218)
T KOG0088|consen  160 NVGISELFESLTAKMIEHS  178 (218)
T ss_pred             ccCHHHHHHHHHHHHHHHh
Confidence            9999999999988766643

>cd04113 Rab4 Rab4 subfamily

Probab=100.00  E-value=1.1e-33  Score=194.34  Aligned_cols=159  Identities=31%  Similarity=0.595  Sum_probs=138.4

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhhCCCCCCCCCceeeee-eEEEEECCeEEEEEEEeCCCccccccccccCcCCCcEEEEEE
Q 036449            7 IKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNF-SANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAF   85 (197)
Q Consensus         7 ~~i~v~G~~~~GKstli~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~   85 (197)
                      +||+++|++|||||||++++..+.+...+.++.+..+ .....+++..+.+++||+||++.+...+..+++++|++++||
T Consensus         1 ~ki~v~G~~~vGKTsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~~~~i~v~   80 (161)
T cd04113           1 FKFIIIGSSGTGKSCLLHRFVENKFKEDSQHTIGVEFGSKIIRVGGKRVKLQIWDTAGQERFRSVTRSYYRGAAGALLVY   80 (161)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEECCEEEEEEEEECcchHHHHHhHHHHhcCCCEEEEEE
Confidence            5899999999999999999999998777777775433 445667777889999999999999988899999999999999


Q ss_pred             eCCCchhHHHHHHHHHHHHhhhC-CCCCEEEEeeCCcccCCcccccCCCCCCcccHHHHHHHHHHhCCCceEEeccCCCC
Q 036449           86 SLISKASYENVSKKWIPELKHYA-PGVPIILVGTKLDLRDDKQFFIDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQQ  164 (197)
Q Consensus        86 d~~~~~s~~~~~~~~~~~i~~~~-~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~  164 (197)
                      |+++++++..+ ..|+..+.... ++.|+++++||.|+.+...          ++.+++..+++..+. .++++||+++.
T Consensus        81 d~~~~~s~~~~-~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~----------~~~~~~~~~~~~~~~-~~~~~Sa~~~~  148 (161)
T cd04113          81 DITNRTSFEAL-PTWLSDARALASPNIVVILVGNKSDLADQRE----------VTFLEASRFAQENGL-LFLETSALTGE  148 (161)
T ss_pred             ECCCHHHHHHH-HHHHHHHHHhCCCCCeEEEEEEchhcchhcc----------CCHHHHHHHHHHcCC-EEEEEECCCCC
Confidence            99999999998 68888777655 7899999999999976443          677888889998886 89999999999


Q ss_pred             CHHHHHHHHHHHH
Q 036449          165 NVKAVFDAAIRVV  177 (197)
Q Consensus       165 ~i~~l~~~i~~~~  177 (197)
                      |++++|+++++.+
T Consensus       149 ~i~~~~~~~~~~~  161 (161)
T cd04113         149 NVEEAFLKCARSI  161 (161)
T ss_pred             CHHHHHHHHHHhC
Confidence            9999999998753

Rab4 has been implicated in numerous functions within the cell. It helps regulate endocytosis through the sorting, recycling, and degradation of early endosomes. Mammalian Rab4 is involved in the regulation of many surface proteins including G-protein-coupled receptors, transferrin receptor, integrins, and surfactant protein A. Experimental data implicate Rab4 in regulation of the recycling of internalized receptors back to the plasma membrane. It is also believed to influence receptor-mediated antigen processing in B-lymphocytes, in calcium-dependent exocytosis in platelets, in alpha-amylase secretion in pancreatic cells, and in insulin-induced translocation of Glut4 from internal vesicles to the cell surface. Rab4 is known to share effector proteins with Rab5 and Rab11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to p

>cd04116 Rab9 Rab9 subfamily

Probab=100.00  E-value=1.7e-33  Score=194.97  Aligned_cols=163  Identities=36%  Similarity=0.642  Sum_probs=139.1

Q ss_pred             CCceeEEEEEcCCCCCHHHHHHHHhhCCCCCCCCCceeeee-eEEEEECCeEEEEEEEeCCCccccccccccCcCCCcEE
Q 036449            3 ASRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNF-SANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVF   81 (197)
Q Consensus         3 ~~~~~~i~v~G~~~~GKstli~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~   81 (197)
                      .+..+||+++|.+|+|||||++++..+.+...+.++.+..+ ...+.+++..+.+++||+||++++..++..+++++|++
T Consensus         2 ~~~~~ki~vvG~~~~GKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~   81 (170)
T cd04116           2 KSSLLKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTLQIWDTAGQERFRSLRTPFYRGSDCC   81 (170)
T ss_pred             CceEEEEEEECCCCCCHHHHHHHHHcCCCCcCcCCceeeEEEEEEEEECCeEEEEEEEeCCChHHHHHhHHHHhcCCCEE
Confidence            35679999999999999999999999998887777775443 45667788889999999999999999999999999999


Q ss_pred             EEEEeCCCchhHHHHHHHHHHHHhhhC-----CCCCEEEEeeCCcccCCcccccCCCCCCcccHHHHHHHHHHhCCCceE
Q 036449           82 ILAFSLISKASYENVSKKWIPELKHYA-----PGVPIILVGTKLDLRDDKQFFIDHPGAVPISTAQGEELRKLIGAPAYI  156 (197)
Q Consensus        82 i~v~d~~~~~s~~~~~~~~~~~i~~~~-----~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  156 (197)
                      ++|||++++++++.+ ..|...+....     ++.|+++|+||+|+... .          +..++++++++..+..+++
T Consensus        82 i~v~d~~~~~s~~~~-~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~-~----------~~~~~~~~~~~~~~~~~~~  149 (170)
T cd04116          82 LLTFAVDDSQSFQNL-SNWKKEFIYYADVKEPESFPFVVLGNKNDIPER-Q----------VSTEEAQAWCRENGDYPYF  149 (170)
T ss_pred             EEEEECCCHHHHHhH-HHHHHHHHHhcccccCCCCcEEEEEECcccccc-c----------cCHHHHHHHHHHCCCCeEE
Confidence            999999999999998 67877665432     36899999999998632 1          5677888898888865899


Q ss_pred             EeccCCCCCHHHHHHHHHHHH
Q 036449          157 ECSSKTQQNVKAVFDAAIRVV  177 (197)
Q Consensus       157 ~~sa~~~~~i~~l~~~i~~~~  177 (197)
                      ++||++|.|+.++|+.+++.+
T Consensus       150 e~Sa~~~~~v~~~~~~~~~~~  170 (170)
T cd04116         150 ETSAKDATNVAAAFEEAVRRV  170 (170)
T ss_pred             EEECCCCCCHHHHHHHHHhhC
Confidence            999999999999999998753

Rab9 is found in late endosomes, together with mannose 6-phosphate receptors (MPRs) and the tail-interacting protein of 47 kD (TIP47). Rab9 is a key mediator of vesicular transport from late endosomes to the trans-Golgi network (TGN) by redirecting the MPRs. Rab9 has been identified as a key component for the replication of several viruses, including HIV1, Ebola, Marburg, and measles, making it a potential target for inhibiting a variety of viruses. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CX

>cd04111 Rab39 Rab39 subfamily

Probab=100.00  E-value=8.7e-34  Score=202.37  Aligned_cols=164  Identities=32%  Similarity=0.557  Sum_probs=140.5

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHhhCCCCCCCCCceeee-eeEEEEE-CCeEEEEEEEeCCCccccccccccCcCCCcEEEE
Q 036449            6 FIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDN-FSANVVV-NGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFIL   83 (197)
Q Consensus         6 ~~~i~v~G~~~~GKstli~~~~~~~~~~~~~~~~~~~-~~~~~~~-~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~   83 (197)
                      .+||+++|.+|||||||++++..+.+...+.+|.+.. +...+.+ ++..+.+++||+||++.+..++..+++++|++++
T Consensus         2 ~~KIvvvG~~~vGKTsLi~~l~~~~~~~~~~~ti~~d~~~~~i~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~iil   81 (211)
T cd04111           2 QFRLIVIGDSTVGKSSLLKRFTEGRFAEVSDPTVGVDFFSRLIEIEPGVRIKLQLWDTAGQERFRSITRSYYRNSVGVLL   81 (211)
T ss_pred             ceEEEEECCCCCCHHHHHHHHHcCCCCCCCCceeceEEEEEEEEECCCCEEEEEEEeCCcchhHHHHHHHHhcCCcEEEE
Confidence            5899999999999999999999999888777777533 3444555 4667899999999999999999999999999999


Q ss_pred             EEeCCCchhHHHHHHHHHHHHhhhC--CCCCEEEEeeCCcccCCcccccCCCCCCcccHHHHHHHHHHhCCCceEEeccC
Q 036449           84 AFSLISKASYENVSKKWIPELKHYA--PGVPIILVGTKLDLRDDKQFFIDHPGAVPISTAQGEELRKLIGAPAYIECSSK  161 (197)
Q Consensus        84 v~d~~~~~s~~~~~~~~~~~i~~~~--~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~  161 (197)
                      |||++++++++.+ ..|+..+....  ...|+++|+||+|+.....          +..+++..+++..+. +|+++||+
T Consensus        82 v~D~~~~~Sf~~l-~~~~~~i~~~~~~~~~~iilvgNK~Dl~~~~~----------v~~~~~~~~~~~~~~-~~~e~Sak  149 (211)
T cd04111          82 VFDITNRESFEHV-HDWLEEARSHIQPHRPVFILVGHKCDLESQRQ----------VTREEAEKLAKDLGM-KYIETSAR  149 (211)
T ss_pred             EEECCCHHHHHHH-HHHHHHHHHhcCCCCCeEEEEEEccccccccc----------cCHHHHHHHHHHhCC-EEEEEeCC
Confidence            9999999999999 67888877654  3578899999999976443          677888899999986 89999999


Q ss_pred             CCCCHHHHHHHHHHHHcCCC
Q 036449          162 TQQNVKAVFDAAIRVVLQPP  181 (197)
Q Consensus       162 ~~~~i~~l~~~i~~~~~~~~  181 (197)
                      +|.|++++|++|++.+.+..
T Consensus       150 ~g~~v~e~f~~l~~~~~~~~  169 (211)
T cd04111         150 TGDNVEEAFELLTQEIYERI  169 (211)
T ss_pred             CCCCHHHHHHHHHHHHHHHh
Confidence            99999999999999877653

Found in eukaryotes, Rab39 is mainly found in epithelial cell lines, but is distributed widely in various human tissues and cell lines. It is believed to be a novel Rab protein involved in regulating Golgi-associated vesicular transport during cellular endocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.

>cd01866 Rab2 Rab2 subfamily

Probab=100.00  E-value=1.8e-33  Score=194.50  Aligned_cols=163  Identities=28%  Similarity=0.594  Sum_probs=141.2

Q ss_pred             ceeEEEEEcCCCCCHHHHHHHHhhCCCCCCCCCceeeee-eEEEEECCeEEEEEEEeCCCccccccccccCcCCCcEEEE
Q 036449            5 RFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNF-SANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFIL   83 (197)
Q Consensus         5 ~~~~i~v~G~~~~GKstli~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~   83 (197)
                      ..+||+++|.+|+|||||++++..+.+...+.++.+..+ ...+.+++..+.+.+||+||++++..+...+++.+|++++
T Consensus         3 ~~~ki~vvG~~~vGKSsLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~il~   82 (168)
T cd01866           3 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGALL   82 (168)
T ss_pred             cceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhccCCEEEE
Confidence            458999999999999999999999988877777765444 4456677777899999999999999888889999999999


Q ss_pred             EEeCCCchhHHHHHHHHHHHHhhhC-CCCCEEEEeeCCcccCCcccccCCCCCCcccHHHHHHHHHHhCCCceEEeccCC
Q 036449           84 AFSLISKASYENVSKKWIPELKHYA-PGVPIILVGTKLDLRDDKQFFIDHPGAVPISTAQGEELRKLIGAPAYIECSSKT  162 (197)
Q Consensus        84 v~d~~~~~s~~~~~~~~~~~i~~~~-~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~  162 (197)
                      |||++++++++.+ ..|+..+.... ++.|+++|+||.|+.....          ++.+++..++...+. +++++||++
T Consensus        83 v~d~~~~~s~~~~-~~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~----------~~~~~~~~~~~~~~~-~~~e~Sa~~  150 (168)
T cd01866          83 VYDITRRETFNHL-TSWLEDARQHSNSNMTIMLIGNKCDLESRRE----------VSYEEGEAFAKEHGL-IFMETSAKT  150 (168)
T ss_pred             EEECCCHHHHHHH-HHHHHHHHHhCCCCCcEEEEEECcccccccC----------CCHHHHHHHHHHcCC-EEEEEeCCC
Confidence            9999999999998 78988887655 7899999999999975433          567778888888887 899999999


Q ss_pred             CCCHHHHHHHHHHHHcC
Q 036449          163 QQNVKAVFDAAIRVVLQ  179 (197)
Q Consensus       163 ~~~i~~l~~~i~~~~~~  179 (197)
                      +.|++++|.++.+.+.+
T Consensus       151 ~~~i~~~~~~~~~~~~~  167 (168)
T cd01866         151 ASNVEEAFINTAKEIYE  167 (168)
T ss_pred             CCCHHHHHHHHHHHHHh
Confidence            99999999999988754

Rab2 is localized on cis-Golgi membranes and interacts with Golgi matrix proteins. Rab2 is also implicated in the maturation of vesicular tubular clusters (VTCs), which are microtubule-associated intermediates in transport between the ER and Golgi apparatus. In plants, Rab2 regulates vesicle trafficking between the ER and the Golgi bodies and is important to pollen tube growth. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key featur

>PLN03110 Rab GTPase; Provisional

Probab=100.00  E-value=1e-33  Score=202.78  Aligned_cols=163  Identities=30%  Similarity=0.567  Sum_probs=143.8

Q ss_pred             ceeEEEEEcCCCCCHHHHHHHHhhCCCCCCCCCceeeee-eEEEEECCeEEEEEEEeCCCccccccccccCcCCCcEEEE
Q 036449            5 RFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNF-SANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFIL   83 (197)
Q Consensus         5 ~~~~i~v~G~~~~GKstli~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~   83 (197)
                      ..+||+++|++|||||||+++|..+.+...+.+|.+..+ ...+.+++..+.+++||+||++++..++..++++++++|+
T Consensus        11 ~~~Ki~ivG~~~vGKStLi~~l~~~~~~~~~~~t~g~~~~~~~v~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~~~~il   90 (216)
T PLN03110         11 YLFKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALL   90 (216)
T ss_pred             ceeEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeEEEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhCCCCEEEE
Confidence            568999999999999999999999998877778876544 5667788888999999999999999999999999999999


Q ss_pred             EEeCCCchhHHHHHHHHHHHHhhhC-CCCCEEEEeeCCcccCCcccccCCCCCCcccHHHHHHHHHHhCCCceEEeccCC
Q 036449           84 AFSLISKASYENVSKKWIPELKHYA-PGVPIILVGTKLDLRDDKQFFIDHPGAVPISTAQGEELRKLIGAPAYIECSSKT  162 (197)
Q Consensus        84 v~d~~~~~s~~~~~~~~~~~i~~~~-~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~  162 (197)
                      |||++++++++.+ ..|+..+.... ++.|+++|+||+|+.+.+.          +..++++.++..++. +++++||++
T Consensus        91 v~d~~~~~s~~~~-~~~~~~~~~~~~~~~piiiv~nK~Dl~~~~~----------~~~~~~~~l~~~~~~-~~~e~SA~~  158 (216)
T PLN03110         91 VYDITKRQTFDNV-QRWLRELRDHADSNIVIMMAGNKSDLNHLRS----------VAEEDGQALAEKEGL-SFLETSALE  158 (216)
T ss_pred             EEECCChHHHHHH-HHHHHHHHHhCCCCCeEEEEEEChhcccccC----------CCHHHHHHHHHHcCC-EEEEEeCCC
Confidence            9999999999998 78988888766 5899999999999966543          667788888888887 899999999


Q ss_pred             CCCHHHHHHHHHHHHcC
Q 036449          163 QQNVKAVFDAAIRVVLQ  179 (197)
Q Consensus       163 ~~~i~~l~~~i~~~~~~  179 (197)
                      +.|++++|+++++.+.+
T Consensus       159 g~~v~~lf~~l~~~i~~  175 (216)
T PLN03110        159 ATNVEKAFQTILLEIYH  175 (216)
T ss_pred             CCCHHHHHHHHHHHHHH
Confidence            99999999999987754

>cd01868 Rab11_like Rab11-like

Probab=100.00  E-value=2e-33  Score=193.66  Aligned_cols=161  Identities=34%  Similarity=0.596  Sum_probs=139.7

Q ss_pred             ceeEEEEEcCCCCCHHHHHHHHhhCCCCCCCCCceeeee-eEEEEECCeEEEEEEEeCCCccccccccccCcCCCcEEEE
Q 036449            5 RFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNF-SANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFIL   83 (197)
Q Consensus         5 ~~~~i~v~G~~~~GKstli~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~   83 (197)
                      ..+||+++|.+|||||||++++..+.+...+.++.+..+ ...+..++..+.+++||+||++.+..++..++++++++|+
T Consensus         2 ~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~   81 (165)
T cd01868           2 YLFKIVLIGDSGVGKSNLLSRFTRNEFNLDSKSTIGVEFATRSIQIDGKTIKAQIWDTAGQERYRAITSAYYRGAVGALL   81 (165)
T ss_pred             CceEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCChHHHHHHHHHHHCCCCEEEE
Confidence            458999999999999999999999988877777776443 5566777877899999999999999999999999999999


Q ss_pred             EEeCCCchhHHHHHHHHHHHHhhhCC-CCCEEEEeeCCcccCCcccccCCCCCCcccHHHHHHHHHHhCCCceEEeccCC
Q 036449           84 AFSLISKASYENVSKKWIPELKHYAP-GVPIILVGTKLDLRDDKQFFIDHPGAVPISTAQGEELRKLIGAPAYIECSSKT  162 (197)
Q Consensus        84 v~d~~~~~s~~~~~~~~~~~i~~~~~-~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~  162 (197)
                      |||++++.+++.+ ..|+..+....+ +.|+++|+||.|+...+.          ...++.+.++...+. +++++||++
T Consensus        82 v~d~~~~~s~~~~-~~~~~~~~~~~~~~~pi~vv~nK~Dl~~~~~----------~~~~~~~~~~~~~~~-~~~~~Sa~~  149 (165)
T cd01868          82 VYDITKKQTFENV-ERWLKELRDHADSNIVIMLVGNKSDLRHLRA----------VPTEEAKAFAEKNGL-SFIETSALD  149 (165)
T ss_pred             EEECcCHHHHHHH-HHHHHHHHHhCCCCCeEEEEEECcccccccc----------CCHHHHHHHHHHcCC-EEEEEECCC
Confidence            9999999999998 689888887764 699999999999976443          566777888887776 899999999


Q ss_pred             CCCHHHHHHHHHHHH
Q 036449          163 QQNVKAVFDAAIRVV  177 (197)
Q Consensus       163 ~~~i~~l~~~i~~~~  177 (197)
                      |.|++++|+++++.+
T Consensus       150 ~~~v~~l~~~l~~~i  164 (165)
T cd01868         150 GTNVEEAFKQLLTEI  164 (165)
T ss_pred             CCCHHHHHHHHHHHh
Confidence            999999999999875

Rab11a, Rab11b, and Rab25 are closely related, evolutionary conserved Rab proteins that are differentially expressed. Rab11a is ubiquitously synthesized, Rab11b is enriched in brain and heart and Rab25 is only found in epithelia. Rab11/25 proteins seem to regulate recycling pathways from endosomes to the plasma membrane and to the trans-Golgi network. Furthermore, Rab11a is thought to function in the histamine-induced fusion of tubulovesicles containing H+, K+ ATPase with the plasma membrane in gastric parietal cells and in insulin-stimulated insertion of GLUT4 in the plasma membrane of cardiomyocytes. Overexpression of Rab25 has recently been observed in ovarian cancer and breast cancer, and has been correlated with worsened outcomes in both diseases. In addition, Rab25 overexpression has also been observed in prostate cancer, transitional cell carcinoma of the bladder, and invasive breast tumor cells. GTPase activating proteins (GAPs) interact with GTP

>cd04115 Rab33B_Rab33A Rab33B/Rab33A subfamily

Probab=100.00  E-value=2.2e-33  Score=194.39  Aligned_cols=161  Identities=30%  Similarity=0.548  Sum_probs=139.3

Q ss_pred             ceeEEEEEcCCCCCHHHHHHHHhhCCCCCCCCCceeee-eeEEEEECCeEEEEEEEeCCCccccc-cccccCcCCCcEEE
Q 036449            5 RFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDN-FSANVVVNGSTVNLGLWDTAGQEDYN-RLRPLSYRGADVFI   82 (197)
Q Consensus         5 ~~~~i~v~G~~~~GKstli~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~i~D~~G~~~~~-~~~~~~~~~~~~~i   82 (197)
                      +.++|+++|++|+|||||++++..+.+...+.++.+.. ....+.+++..+.+.+||+||++++. .++..+++++|+++
T Consensus         1 r~~ki~vvG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~d~~i   80 (170)
T cd04115           1 RIFKIIVIGDSNVGKTCLTYRFCAGRFPERTEATIGVDFRERTVEIDGERIKVQLWDTAGQERFRKSMVQHYYRNVHAVV   80 (170)
T ss_pred             CceEEEEECCCCCCHHHHHHHHHhCCCCCccccceeEEEEEEEEEECCeEEEEEEEeCCChHHHHHhhHHHhhcCCCEEE
Confidence            46899999999999999999999998887777777543 34566778888999999999999887 57788899999999


Q ss_pred             EEEeCCCchhHHHHHHHHHHHHhhhC--CCCCEEEEeeCCcccCCcccccCCCCCCcccHHHHHHHHHHhCCCceEEecc
Q 036449           83 LAFSLISKASYENVSKKWIPELKHYA--PGVPIILVGTKLDLRDDKQFFIDHPGAVPISTAQGEELRKLIGAPAYIECSS  160 (197)
Q Consensus        83 ~v~d~~~~~s~~~~~~~~~~~i~~~~--~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa  160 (197)
                      +|||++++++++.+ ..|+..+....  ++.|+++|+||+|+...+.          +..+++++++...+. +|+++||
T Consensus        81 ~v~d~~~~~s~~~~-~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~----------~~~~~~~~~~~~~~~-~~~e~Sa  148 (170)
T cd04115          81 FVYDVTNMASFHSL-PSWIEECEQHSLPNEVPRILVGNKCDLREQIQ----------VPTDLAQRFADAHSM-PLFETSA  148 (170)
T ss_pred             EEEECCCHHHHHhH-HHHHHHHHHhcCCCCCCEEEEEECccchhhcC----------CCHHHHHHHHHHcCC-cEEEEec
Confidence            99999999999998 78988887654  5799999999999976543          667788889888886 8999999


Q ss_pred             CC---CCCHHHHHHHHHHHH
Q 036449          161 KT---QQNVKAVFDAAIRVV  177 (197)
Q Consensus       161 ~~---~~~i~~l~~~i~~~~  177 (197)
                      ++   +.+++++|..+++.+
T Consensus       149 ~~~~~~~~i~~~f~~l~~~~  168 (170)
T cd04115         149 KDPSENDHVEAIFMTLAHKL  168 (170)
T ss_pred             cCCcCCCCHHHHHHHHHHHh
Confidence            99   899999999999876

Rab33B is ubiquitously expressed in mouse tissues and cells, where it is localized to the medial Golgi cisternae. It colocalizes with alpha-mannose II. Together with the other cisternal Rabs, Rab6A and Rab6A', it is believed to regulate the Golgi response to stress and is likely a molecular target in stress-activated signaling pathways. Rab33A (previously known as S10) is expressed primarily in the brain and immune system cells. In humans, it is located on the X chromosome at Xq26 and its expression is down-regulated in tuberculosis patients. Experimental evidence suggests that Rab33A is a novel CD8+ T cell factor that likely plays a role in tuberculosis disease processes. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine

>PLN03108 Rab family protein; Provisional

Probab=100.00  E-value=1.6e-33  Score=200.99  Aligned_cols=168  Identities=30%  Similarity=0.581  Sum_probs=146.0

Q ss_pred             CCCCceeEEEEEcCCCCCHHHHHHHHhhCCCCCCCCCceeeee-eEEEEECCeEEEEEEEeCCCccccccccccCcCCCc
Q 036449            1 MSASRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNF-SANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGAD   79 (197)
Q Consensus         1 m~~~~~~~i~v~G~~~~GKstli~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~   79 (197)
                      |.....+||+++|++|+|||||++++....+...+.++.+..+ ...+.+++..+.+++||++|++.+..++..++..+|
T Consensus         1 ~~~~~~~kivivG~~gvGKStLi~~l~~~~~~~~~~~ti~~~~~~~~i~~~~~~i~l~l~Dt~G~~~~~~~~~~~~~~ad   80 (210)
T PLN03108          1 MSYAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAA   80 (210)
T ss_pred             CCCCcceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCCccceEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHhccCC
Confidence            7777889999999999999999999999988877777775444 445677888889999999999999988888999999


Q ss_pred             EEEEEEeCCCchhHHHHHHHHHHHHhhhC-CCCCEEEEeeCCcccCCcccccCCCCCCcccHHHHHHHHHHhCCCceEEe
Q 036449           80 VFILAFSLISKASYENVSKKWIPELKHYA-PGVPIILVGTKLDLRDDKQFFIDHPGAVPISTAQGEELRKLIGAPAYIEC  158 (197)
Q Consensus        80 ~~i~v~d~~~~~s~~~~~~~~~~~i~~~~-~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  158 (197)
                      ++++|||++++++++.+ ..|+..+.... ++.|+++++||+|+.+.+.          ++.+++.++++..+. +++++
T Consensus        81 ~~vlv~D~~~~~s~~~l-~~~~~~~~~~~~~~~piiiv~nK~Dl~~~~~----------~~~~~~~~~~~~~~~-~~~e~  148 (210)
T PLN03108         81 GALLVYDITRRETFNHL-ASWLEDARQHANANMTIMLIGNKCDLAHRRA----------VSTEEGEQFAKEHGL-IFMEA  148 (210)
T ss_pred             EEEEEEECCcHHHHHHH-HHHHHHHHHhcCCCCcEEEEEECccCccccC----------CCHHHHHHHHHHcCC-EEEEE
Confidence            99999999999999998 67877776554 6899999999999976443          677888899998887 89999


Q ss_pred             ccCCCCCHHHHHHHHHHHHcCC
Q 036449          159 SSKTQQNVKAVFDAAIRVVLQP  180 (197)
Q Consensus       159 sa~~~~~i~~l~~~i~~~~~~~  180 (197)
                      ||+++.|++++|.++++.+.+.
T Consensus       149 Sa~~~~~v~e~f~~l~~~~~~~  170 (210)
T PLN03108        149 SAKTAQNVEEAFIKTAAKIYKK  170 (210)
T ss_pred             eCCCCCCHHHHHHHHHHHHHHH
Confidence            9999999999999999888754

>cd04177 RSR1 RSR1 subgroup

Probab=100.00  E-value=2.7e-33  Score=193.59  Aligned_cols=162  Identities=32%  Similarity=0.571  Sum_probs=141.8

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHhhCCCCCCCCCceeeeeeEEEEECCeEEEEEEEeCCCccccccccccCcCCCcEEEEEE
Q 036449            6 FIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAF   85 (197)
Q Consensus         6 ~~~i~v~G~~~~GKstli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~   85 (197)
                      .+||+++|.+|+|||||++++..+.+...+.++.+..+...+.+++..+.+++||+||+++|..++..++..++++++||
T Consensus         1 ~~ki~liG~~~~GKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~vlv~   80 (168)
T cd04177           1 DYKIVVLGAGGVGKSALTVQFVQNVFIESYDPTIEDSYRKQVEIDGRQCDLEILDTAGTEQFTAMRELYIKSGQGFLLVY   80 (168)
T ss_pred             CeEEEEECCCCCCHHHHHHHHHhCCCCcccCCcchheEEEEEEECCEEEEEEEEeCCCcccchhhhHHHHhhCCEEEEEE
Confidence            37899999999999999999999999888888887777777778888899999999999999999999999999999999


Q ss_pred             eCCCchhHHHHHHHHHHHHhhhC--CCCCEEEEeeCCcccCCcccccCCCCCCcccHHHHHHHHHHhCCCceEEeccCCC
Q 036449           86 SLISKASYENVSKKWIPELKHYA--PGVPIILVGTKLDLRDDKQFFIDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQ  163 (197)
Q Consensus        86 d~~~~~s~~~~~~~~~~~i~~~~--~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~  163 (197)
                      |++++++++.. ..|...+....  ++.|+++++||.|+...+.          ...+++..+++.++..+++++||+++
T Consensus        81 ~~~~~~s~~~~-~~~~~~i~~~~~~~~~piiiv~nK~D~~~~~~----------~~~~~~~~~~~~~~~~~~~~~SA~~~  149 (168)
T cd04177          81 SVTSEASLNEL-GELREQVLRIKDSDNVPMVLVGNKADLEDDRQ----------VSREDGVSLSQQWGNVPFYETSARKR  149 (168)
T ss_pred             ECCCHHHHHHH-HHHHHHHHHhhCCCCCCEEEEEEChhccccCc----------cCHHHHHHHHHHcCCceEEEeeCCCC
Confidence            99999999998 67877776533  5899999999999965443          55667778888888448999999999


Q ss_pred             CCHHHHHHHHHHHHc
Q 036449          164 QNVKAVFDAAIRVVL  178 (197)
Q Consensus       164 ~~i~~l~~~i~~~~~  178 (197)
                      .|++++|.++++.+.
T Consensus       150 ~~i~~~f~~i~~~~~  164 (168)
T cd04177         150 TNVDEVFIDLVRQII  164 (168)
T ss_pred             CCHHHHHHHHHHHHh
Confidence            999999999998764

RSR1/Bud1p is a member of the Rap subfamily of the Ras family that is found in fungi. In budding yeasts, RSR1 is involved in selecting a site for bud growth on the cell cortex, which directs the establishment of cell polarization. The Rho family GTPase cdc42 and its GEF, cdc24, then establish an axis of polarized growth by organizing the actin cytoskeleton and secretory apparatus at the bud site. It is believed that cdc42 interacts directly with RSR1 in vivo. In filamentous fungi, polar growth occurs at the tips of hypha and at novel growth sites along the extending hypha. In Ashbya gossypii, RSR1 is a key regulator of hyphal growth, localizing at the tip region and regulating in apical polarization of the actin cytoskeleton. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key featu

>smart00176 RAN Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases

Probab=100.00  E-value=2.2e-33  Score=198.03  Aligned_cols=155  Identities=28%  Similarity=0.492  Sum_probs=134.8

Q ss_pred             EcCCCCCHHHHHHHHhhCCCCCCCCCceeeee-eEEEEECCeEEEEEEEeCCCccccccccccCcCCCcEEEEEEeCCCc
Q 036449           12 VGDGAVGKTCLLISYTSNTFPTDYVPTVFDNF-SANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISK   90 (197)
Q Consensus        12 ~G~~~~GKstli~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~   90 (197)
                      +|.+|||||||+.++..+.+...+.+|.+..+ ...+.+++..+.+.+||++|+++|..++..++++++++|+|||++++
T Consensus         1 vG~~~vGKTsLi~r~~~~~f~~~~~~Tig~~~~~~~~~~~~~~~~l~iwDt~G~e~~~~l~~~~~~~ad~~ilV~D~t~~   80 (200)
T smart00176        1 VGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIRFNVWDTAGQEKFGGLRDGYYIQGQCAIIMFDVTAR   80 (200)
T ss_pred             CCCCCCCHHHHHHHHhcCCCCCCCCCceeEEEEEEEEEECCEEEEEEEEECCCchhhhhhhHHHhcCCCEEEEEEECCCh
Confidence            69999999999999999999888888886444 55667788889999999999999999999999999999999999999


Q ss_pred             hhHHHHHHHHHHHHhhhCCCCCEEEEeeCCcccCCcccccCCCCCCcccHHHHHHHHHHhCCCceEEeccCCCCCHHHHH
Q 036449           91 ASYENVSKKWIPELKHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQQNVKAVF  170 (197)
Q Consensus        91 ~s~~~~~~~~~~~i~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~l~  170 (197)
                      .+++.+ ..|+..+....+++|+++|+||+|+....           +..+. ..+++..++ .|++|||++|.||+++|
T Consensus        81 ~S~~~i-~~w~~~i~~~~~~~piilvgNK~Dl~~~~-----------v~~~~-~~~~~~~~~-~~~e~SAk~~~~v~~~F  146 (200)
T smart00176       81 VTYKNV-PNWHRDLVRVCENIPIVLCGNKVDVKDRK-----------VKAKS-ITFHRKKNL-QYYDISAKSNYNFEKPF  146 (200)
T ss_pred             HHHHHH-HHHHHHHHHhCCCCCEEEEEECccccccc-----------CCHHH-HHHHHHcCC-EEEEEeCCCCCCHHHHH
Confidence            999998 68999998877899999999999985421           23333 467777777 89999999999999999


Q ss_pred             HHHHHHHcCC
Q 036449          171 DAAIRVVLQP  180 (197)
Q Consensus       171 ~~i~~~~~~~  180 (197)
                      .+|++.+...
T Consensus       147 ~~l~~~i~~~  156 (200)
T smart00176      147 LWLARKLIGD  156 (200)
T ss_pred             HHHHHHHHhc
Confidence            9999988765

Ran is involved in the active transport of proteins through nuclear pores.

>cd04143 Rhes_like Rhes_like subfamily

Probab=100.00  E-value=3e-33  Score=203.23  Aligned_cols=163  Identities=28%  Similarity=0.440  Sum_probs=138.5

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhhCCCCCCCCCceeeeeeEEEEECCeEEEEEEEeCCCccccccccccCcCCCcEEEEEEe
Q 036449            7 IKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFS   86 (197)
Q Consensus         7 ~~i~v~G~~~~GKstli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d   86 (197)
                      +||+++|.+|||||||++++..+.+...+.+|.++.+...+.+++..+.+++|||+|++.|..++..++.++|++|+|||
T Consensus         1 ~KVvvlG~~gvGKTSLi~r~~~~~f~~~y~pTi~d~~~k~~~i~~~~~~l~I~Dt~G~~~~~~~~~~~~~~ad~iIlVfd   80 (247)
T cd04143           1 YRMVVLGASKVGKTAIVSRFLGGRFEEQYTPTIEDFHRKLYSIRGEVYQLDILDTSGNHPFPAMRRLSILTGDVFILVFS   80 (247)
T ss_pred             CEEEEECcCCCCHHHHHHHHHcCCCCCCCCCChhHhEEEEEEECCEEEEEEEEECCCChhhhHHHHHHhccCCEEEEEEe
Confidence            58999999999999999999999998888898887777777888888999999999999998888888899999999999


Q ss_pred             CCCchhHHHHHHHHHHHHhhh----------CCCCCEEEEeeCCcccCCcccccCCCCCCcccHHHHHHHHHHhCCCceE
Q 036449           87 LISKASYENVSKKWIPELKHY----------APGVPIILVGTKLDLRDDKQFFIDHPGAVPISTAQGEELRKLIGAPAYI  156 (197)
Q Consensus        87 ~~~~~s~~~~~~~~~~~i~~~----------~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  156 (197)
                      ++++++|+.+ ..|...+...          .++.|+++|+||+|+...+.          +..+++.++........++
T Consensus        81 v~~~~Sf~~i-~~~~~~I~~~k~~~~~~~~~~~~~piIivgNK~Dl~~~~~----------v~~~ei~~~~~~~~~~~~~  149 (247)
T cd04143          81 LDNRESFEEV-CRLREQILETKSCLKNKTKENVKIPMVICGNKADRDFPRE----------VQRDEVEQLVGGDENCAYF  149 (247)
T ss_pred             CCCHHHHHHH-HHHHHHHHHhhcccccccccCCCCcEEEEEECccchhccc----------cCHHHHHHHHHhcCCCEEE
Confidence            9999999998 6777776542          25799999999999975433          5666777766544333799


Q ss_pred             EeccCCCCCHHHHHHHHHHHHcCC
Q 036449          157 ECSSKTQQNVKAVFDAAIRVVLQP  180 (197)
Q Consensus       157 ~~sa~~~~~i~~l~~~i~~~~~~~  180 (197)
                      ++||+++.|++++|++|++.+..+
T Consensus       150 evSAktg~gI~elf~~L~~~~~~p  173 (247)
T cd04143         150 EVSAKKNSNLDEMFRALFSLAKLP  173 (247)
T ss_pred             EEeCCCCCCHHHHHHHHHHHhccc
Confidence            999999999999999999976544

This subfamily includes Rhes (Ras homolog enriched in striatum) and Dexras1/AGS1 (activator of G-protein signaling 1). These proteins are homologous, but exhibit significant differences in tissue distribution and subcellular localization. Rhes is found primarily in the striatum of the brain, but is also expressed in other areas of the brain, such as the cerebral cortex, hippocampus, inferior colliculus, and cerebellum. Rhes expression is controlled by thyroid hormones. In rat PC12 cells, Rhes is farnesylated and localizes to the plasma membrane. Rhes binds and activates PI3K, and plays a role in coupling serpentine membrane receptors with heterotrimeric G-protein signaling. Rhes has recently been shown to be reduced under conditions of dopamine supersensitivity and may play a role in determining dopamine receptor sensitivity. Dexras1/AGS1 is a dexamethasone-induced Ras protein that is expressed primarily in the brain, with low expression l

>KOG0095 consensus GTPase Rab30, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=3.1e-34  Score=184.76  Aligned_cols=164  Identities=34%  Similarity=0.599  Sum_probs=147.7

Q ss_pred             ceeEEEEEcCCCCCHHHHHHHHhhCCCCCCCCCceeeee-eEEEEECCeEEEEEEEeCCCccccccccccCcCCCcEEEE
Q 036449            5 RFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNF-SANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFIL   83 (197)
Q Consensus         5 ~~~~i~v~G~~~~GKstli~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~   83 (197)
                      --+||+++|..|+|||+|+++|..+-|++....|++..+ -+++.+++..+++++|||.|+++|++....+++.++++|+
T Consensus         6 flfkivlvgnagvgktclvrrftqglfppgqgatigvdfmiktvev~gekiklqiwdtagqerfrsitqsyyrsahalil   85 (213)
T KOG0095|consen    6 FLFKIVLVGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEVNGEKIKLQIWDTAGQERFRSITQSYYRSAHALIL   85 (213)
T ss_pred             eeEEEEEEccCCcCcchhhhhhhccCCCCCCCceeeeeEEEEEEEECCeEEEEEEeeccchHHHHHHHHHHhhhcceEEE
Confidence            348999999999999999999999999999888887555 5678899999999999999999999999999999999999


Q ss_pred             EEeCCCchhHHHHHHHHHHHHhhhC-CCCCEEEEeeCCcccCCcccccCCCCCCcccHHHHHHHHHHhCCCceEEeccCC
Q 036449           84 AFSLISKASYENVSKKWIPELKHYA-PGVPIILVGTKLDLRDDKQFFIDHPGAVPISTAQGEELRKLIGAPAYIECSSKT  162 (197)
Q Consensus        84 v~d~~~~~s~~~~~~~~~~~i~~~~-~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~  162 (197)
                      |||++...+|+-+ -.|+..|+.+. .....|+|+||.|+.+.++          +....+++|++.... .|+++||++
T Consensus        86 vydiscqpsfdcl-pewlreie~yan~kvlkilvgnk~d~~drre----------vp~qigeefs~~qdm-yfletsake  153 (213)
T KOG0095|consen   86 VYDISCQPSFDCL-PEWLREIEQYANNKVLKILVGNKIDLADRRE----------VPQQIGEEFSEAQDM-YFLETSAKE  153 (213)
T ss_pred             EEecccCcchhhh-HHHHHHHHHHhhcceEEEeeccccchhhhhh----------hhHHHHHHHHHhhhh-hhhhhcccc
Confidence            9999999999998 79999999888 5677799999999987665          778888999988777 799999999


Q ss_pred             CCCHHHHHHHHHHHHcCC
Q 036449          163 QQNVKAVFDAAIRVVLQP  180 (197)
Q Consensus       163 ~~~i~~l~~~i~~~~~~~  180 (197)
                      -+|++.+|..++-.+...
T Consensus       154 a~nve~lf~~~a~rli~~  171 (213)
T KOG0095|consen  154 ADNVEKLFLDLACRLISE  171 (213)
T ss_pred             hhhHHHHHHHHHHHHHHH
Confidence            999999999998766543

>cd04146 RERG_RasL11_like RERG/RasL11-like subfamily

Probab=100.00  E-value=1.9e-33  Score=193.83  Aligned_cols=159  Identities=31%  Similarity=0.535  Sum_probs=136.0

Q ss_pred             EEEEEcCCCCCHHHHHHHHhhCCCCCCCCCceeeeeeEEEEECCeEEEEEEEeCCCcccc-ccccccCcCCCcEEEEEEe
Q 036449            8 KCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQEDY-NRLRPLSYRGADVFILAFS   86 (197)
Q Consensus         8 ~i~v~G~~~~GKstli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~-~~~~~~~~~~~~~~i~v~d   86 (197)
                      ||+++|++|+|||||++++..+.+...+.++....+.....+++..+.+++||+||++.+ ......+++++|++|+|||
T Consensus         1 ki~vvG~~~~GKtsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~d~~i~v~d   80 (165)
T cd04146           1 KIAVLGASGVGKSALVVRFLTKRFIGEYDPNLESLYSRQVTIDGEQVSLEILDTAGQQQADTEQLERSIRWADGFVLVYS   80 (165)
T ss_pred             CEEEECCCCCcHHHHHHHHHhCccccccCCChHHhceEEEEECCEEEEEEEEECCCCcccccchHHHHHHhCCEEEEEEE
Confidence            689999999999999999999888888888886666667778888889999999999853 4455667889999999999


Q ss_pred             CCCchhHHHHHHHHHHHHhhhC---CCCCEEEEeeCCcccCCcccccCCCCCCcccHHHHHHHHHHhCCCceEEeccCCC
Q 036449           87 LISKASYENVSKKWIPELKHYA---PGVPIILVGTKLDLRDDKQFFIDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQ  163 (197)
Q Consensus        87 ~~~~~s~~~~~~~~~~~i~~~~---~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~  163 (197)
                      ++++++++.+ ..|+..+....   ++.|+++|+||+|+.+.+.          +..+++..+++..+. +|+++||+++
T Consensus        81 ~~~~~s~~~~-~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~----------v~~~~~~~~~~~~~~-~~~e~Sa~~~  148 (165)
T cd04146          81 ITDRSSFDEI-SQLKQLIREIKKRDREIPVILVGNKADLLHYRQ----------VSTEEGEKLASELGC-LFFEVSAAED  148 (165)
T ss_pred             CCCHHHHHHH-HHHHHHHHHHhcCCCCCCEEEEEECCchHHhCc----------cCHHHHHHHHHHcCC-EEEEeCCCCC
Confidence            9999999998 77888777653   4899999999999965443          667788889998887 8999999999


Q ss_pred             -CCHHHHHHHHHHHHc
Q 036449          164 -QNVKAVFDAAIRVVL  178 (197)
Q Consensus       164 -~~i~~l~~~i~~~~~  178 (197)
                       .|++++|..+++.+.
T Consensus       149 ~~~v~~~f~~l~~~~~  164 (165)
T cd04146         149 YDGVHSVFHELCREVR  164 (165)
T ss_pred             chhHHHHHHHHHHHHh
Confidence             599999999998764

RERG (Ras-related and Estrogen- Regulated Growth inhibitor) and Ras-like 11 are members of a novel subfamily of Ras that were identified based on their behavior in breast and prostate tumors, respectively. RERG expression was decreased or lost in a significant fraction of primary human breast tumors that lack estrogen receptor and are correlated with poor clinical prognosis. Elevated RERG expression correlated with favorable patient outcome in a breast tumor subtype that is positive for estrogen receptor expression. In contrast to most Ras proteins, RERG overexpression inhibited the growth of breast tumor cells in vitro and in vivo. RasL11 was found to be ubiquitously expressed in human tissue, but down-regulated in prostate tumors. Both RERG and RasL11 lack the C-terminal CaaX prenylation motif, where a = an aliphatic amino acid and X = any amino acid, and are localized primarily in the cytoplasm. Both are believed to have tu

>cd01892 Miro2 Miro2 subfamily

Probab=100.00  E-value=4.6e-33  Score=192.47  Aligned_cols=164  Identities=21%  Similarity=0.314  Sum_probs=137.9

Q ss_pred             CceeEEEEEcCCCCCHHHHHHHHhhCCCC-CCCCCceeeeee-EEEEECCeEEEEEEEeCCCccccccccccCcCCCcEE
Q 036449            4 SRFIKCVTVGDGAVGKTCLLISYTSNTFP-TDYVPTVFDNFS-ANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVF   81 (197)
Q Consensus         4 ~~~~~i~v~G~~~~GKstli~~~~~~~~~-~~~~~~~~~~~~-~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~   81 (197)
                      .+.+||+++|.+|||||||++++..+.+. ..+.||.+..+. ..+.+++..+.+.+||++|++.+..++..++.++|++
T Consensus         2 ~~~~kv~~vG~~~vGKTsli~~~~~~~f~~~~~~~T~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~~~~~d~~   81 (169)
T cd01892           2 RNVFLCFVLGAKGSGKSALLRAFLGRSFSLNAYSPTIKPRYAVNTVEVYGQEKYLILREVGEDEVAILLNDAELAACDVA   81 (169)
T ss_pred             CeEEEEEEECCCCCcHHHHHHHHhCCCCCcccCCCccCcceEEEEEEECCeEEEEEEEecCCcccccccchhhhhcCCEE
Confidence            57899999999999999999999999998 888898876554 4566788788899999999999999999999999999


Q ss_pred             EEEEeCCCchhHHHHHHHHHHHHhhhCCCCCEEEEeeCCcccCCcccccCCCCCCcccHHHHHHHHHHhCCCceEEeccC
Q 036449           82 ILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPISTAQGEELRKLIGAPAYIECSSK  161 (197)
Q Consensus        82 i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~  161 (197)
                      ++|||++++.+++.+ ..|+..+... ++.|+++|+||+|+.+...          ....+..++++.++...++++||+
T Consensus        82 llv~d~~~~~s~~~~-~~~~~~~~~~-~~~p~iiv~NK~Dl~~~~~----------~~~~~~~~~~~~~~~~~~~~~Sa~  149 (169)
T cd01892          82 CLVYDSSDPKSFSYC-AEVYKKYFML-GEIPCLFVAAKADLDEQQQ----------RYEVQPDEFCRKLGLPPPLHFSSK  149 (169)
T ss_pred             EEEEeCCCHHHHHHH-HHHHHHhccC-CCCeEEEEEEccccccccc----------ccccCHHHHHHHcCCCCCEEEEec
Confidence            999999999999887 6777765322 4799999999999965332          223445677777877557999999


Q ss_pred             CCCCHHHHHHHHHHHHcC
Q 036449          162 TQQNVKAVFDAAIRVVLQ  179 (197)
Q Consensus       162 ~~~~i~~l~~~i~~~~~~  179 (197)
                      ++.|++++|+.+++.+..
T Consensus       150 ~~~~v~~lf~~l~~~~~~  167 (169)
T cd01892         150 LGDSSNELFTKLATAAQY  167 (169)
T ss_pred             cCccHHHHHHHHHHHhhC
Confidence            999999999999998764

Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the putative GTPase domain in the C terminus of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.

>cd04101 RabL4 RabL4 (Rab-like4) subfamily

Probab=100.00  E-value=8.9e-33  Score=190.27  Aligned_cols=159  Identities=31%  Similarity=0.568  Sum_probs=134.8

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhhC--CCCCCCCCceeeee-eEEEEEC-CeEEEEEEEeCCCccccccccccCcCCCcEEE
Q 036449            7 IKCVTVGDGAVGKTCLLISYTSN--TFPTDYVPTVFDNF-SANVVVN-GSTVNLGLWDTAGQEDYNRLRPLSYRGADVFI   82 (197)
Q Consensus         7 ~~i~v~G~~~~GKstli~~~~~~--~~~~~~~~~~~~~~-~~~~~~~-~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i   82 (197)
                      +||+++|.+|||||||++++..+  .+..++.++.+..+ .....++ +..+.+.+||+||++.+..++..++.++|+++
T Consensus         1 ~ki~vvG~~~~GKtsl~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~ii   80 (164)
T cd04101           1 LRCAVVGDPAVGKTAFVQMFHSNGAVFPKNYLMTTGCDFVVKEVPVDTDNTVELFIFDSAGQELYSDMVSNYWESPSVFI   80 (164)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCCCcCccCCCceEEEEEEEEEEeCCCCEEEEEEEECCCHHHHHHHHHHHhCCCCEEE
Confidence            58999999999999999999865  67788888885444 3344443 56789999999999999888889999999999


Q ss_pred             EEEeCCCchhHHHHHHHHHHHHhhhCCCCCEEEEeeCCcccCCcccccCCCCCCcccHHHHHHHHHHhCCCceEEeccCC
Q 036449           83 LAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPISTAQGEELRKLIGAPAYIECSSKT  162 (197)
Q Consensus        83 ~v~d~~~~~s~~~~~~~~~~~i~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~  162 (197)
                      +|||++++++++.+ ..|+..+....++.|+++|+||+|+.+...          +...+++.++...+. +++++||++
T Consensus        81 ~v~d~~~~~s~~~~-~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~----------~~~~~~~~~~~~~~~-~~~~~Sa~~  148 (164)
T cd04101          81 LVYDVSNKASFENC-SRWVNKVRTASKHMPGVLVGNKMDLADKAE----------VTDAQAQAFAQANQL-KFFKTSALR  148 (164)
T ss_pred             EEEECcCHHHHHHH-HHHHHHHHHhCCCCCEEEEEECcccccccC----------CCHHHHHHHHHHcCC-eEEEEeCCC
Confidence            99999999999988 789888887767899999999999965443          455666677777776 799999999


Q ss_pred             CCCHHHHHHHHHHHH
Q 036449          163 QQNVKAVFDAAIRVV  177 (197)
Q Consensus       163 ~~~i~~l~~~i~~~~  177 (197)
                      +.|++++|+.+++.+
T Consensus       149 ~~gi~~l~~~l~~~~  163 (164)
T cd04101         149 GVGYEEPFESLARAF  163 (164)
T ss_pred             CCChHHHHHHHHHHh
Confidence            999999999999875

RabL4s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL4 lacks a prenylation site at the C-terminus. The specific function of RabL4 remains unknown.

>smart00175 RAB Rab subfamily of small GTPases

Probab=100.00  E-value=1.2e-32  Score=189.47  Aligned_cols=161  Identities=38%  Similarity=0.700  Sum_probs=139.3

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhhCCCCCCCCCceeeee-eEEEEECCeEEEEEEEeCCCccccccccccCcCCCcEEEEEE
Q 036449            7 IKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNF-SANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAF   85 (197)
Q Consensus         7 ~~i~v~G~~~~GKstli~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~   85 (197)
                      +||+++|++|+|||||++++.+..+...+.++.+..+ ...+..++..+.+++||+||++.+...+..++..+|++|+||
T Consensus         1 ~kv~v~G~~~~GKTtli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~ilv~   80 (164)
T smart00175        1 FKIILIGDSGVGKSSLLSRFTDGKFSEQYKSTIGVDFKTKTIEVDGKRVKLQIWDTAGQERFRSITSSYYRGAVGALLVY   80 (164)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCChHHHHHHHHHHhCCCCEEEEEE
Confidence            6899999999999999999999888777767765443 445667777788999999999999999999999999999999


Q ss_pred             eCCCchhHHHHHHHHHHHHhhhC-CCCCEEEEeeCCcccCCcccccCCCCCCcccHHHHHHHHHHhCCCceEEeccCCCC
Q 036449           86 SLISKASYENVSKKWIPELKHYA-PGVPIILVGTKLDLRDDKQFFIDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQQ  164 (197)
Q Consensus        86 d~~~~~s~~~~~~~~~~~i~~~~-~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~  164 (197)
                      |++++.+++.+ ..|+..+.... ++.|+++|+||+|+.+...          ...+.+..+++..+. +++++||+++.
T Consensus        81 d~~~~~s~~~~-~~~l~~~~~~~~~~~pivvv~nK~D~~~~~~----------~~~~~~~~~~~~~~~-~~~e~Sa~~~~  148 (164)
T smart00175       81 DITNRESFENL-KNWLKELREYADPNVVIMLVGNKSDLEDQRQ----------VSREEAEAFAEEHGL-PFFETSAKTNT  148 (164)
T ss_pred             ECCCHHHHHHH-HHHHHHHHHhCCCCCeEEEEEEchhcccccC----------CCHHHHHHHHHHcCC-eEEEEeCCCCC
Confidence            99999999998 57988887766 7899999999999876433          566778888888887 79999999999


Q ss_pred             CHHHHHHHHHHHHcC
Q 036449          165 NVKAVFDAAIRVVLQ  179 (197)
Q Consensus       165 ~i~~l~~~i~~~~~~  179 (197)
                      |++++|++|.+.+.+
T Consensus       149 ~i~~l~~~i~~~~~~  163 (164)
T smart00175      149 NVEEAFEELAREILK  163 (164)
T ss_pred             CHHHHHHHHHHHHhh
Confidence            999999999988754

Rab GTPases are implicated in vesicle trafficking.

>cd00157 Rho Rho (Ras homology) family

Probab=100.00  E-value=2.3e-32  Score=189.42  Aligned_cols=169  Identities=65%  Similarity=1.101  Sum_probs=143.6

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhhCCCCCCCCCceeeeeeEEEEECCeEEEEEEEeCCCccccccccccCcCCCcEEEEEEe
Q 036449            7 IKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFS   86 (197)
Q Consensus         7 ~~i~v~G~~~~GKstli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d   86 (197)
                      +||+++|.+|+|||||++++..+.+...+.++....+......++..+.+++||+||++.+...+..+++.+|++++|||
T Consensus         1 iki~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d   80 (171)
T cd00157           1 IKIVVVGDGAVGKTCLLISYTTGKFPTEYVPTVFDNYSATVTVDGKQVNLGLWDTAGQEEYDRLRPLSYPNTDVFLICFS   80 (171)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeeEEEEEECCEEEEEEEEeCCCcccccccchhhcCCCCEEEEEEE
Confidence            68999999999999999999999987777888877777777788888999999999999988888888999999999999


Q ss_pred             CCCchhHHHHHHHHHHHHhhhCCCCCEEEEeeCCcccCCccccc-CCCCCCcccHHHHHHHHHHhCCCceEEeccCCCCC
Q 036449           87 LISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLRDDKQFFI-DHPGAVPISTAQGEELRKLIGAPAYIECSSKTQQN  165 (197)
Q Consensus        87 ~~~~~s~~~~~~~~~~~i~~~~~~~~~ivv~nK~D~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~  165 (197)
                      +++++++......|+..+....++.|+++|+||+|+.+...... -......+..+++..++..++..+++++||++|.|
T Consensus        81 ~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~~~g  160 (171)
T cd00157          81 VDSPSSFENVKTKWIPEIRHYCPNVPIILVGTKIDLRDDENTLKKLEKGKEPITPEEGEKLAKEIGAIGYMECSALTQEG  160 (171)
T ss_pred             CCCHHHHHHHHHHHHHHHHhhCCCCCEEEEEccHHhhhchhhhhhcccCCCccCHHHHHHHHHHhCCeEEEEeecCCCCC
Confidence            99999999987789988888778899999999999976543100 00011234577888888888876899999999999


Q ss_pred             HHHHHHHHHH
Q 036449          166 VKAVFDAAIR  175 (197)
Q Consensus       166 i~~l~~~i~~  175 (197)
                      ++++|++|++
T Consensus       161 i~~l~~~i~~  170 (171)
T cd00157         161 VKEVFEEAIR  170 (171)
T ss_pred             HHHHHHHHhh
Confidence            9999999875

Members of the Rho family include RhoA, Cdc42, Rac, Rnd, Wrch1, RhoBTB, and Rop. There are 22 human Rho family members identified currently. These proteins are all involved in the reorganization of the actin cytoskeleton in response to external stimuli. They also have roles in cell transformation by Ras in cytokinesis, in focal adhesion formation and in the stimulation of stress-activated kinase. These various functions are controlled through distinct effector proteins and mediated through a GTP-binding/GTPase cycle involving three classes of regulating proteins: GAPs (GTPase-activating proteins), GEFs (guanine nucleotide exchange factors), and GDIs (guanine nucleotide dissociation inhibitors). Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho protein

>cd01861 Rab6 Rab6 subfamily

Probab=100.00  E-value=1.7e-32  Score=188.27  Aligned_cols=159  Identities=36%  Similarity=0.613  Sum_probs=136.5

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhhCCCCCCCCCcee-eeeeEEEEECCeEEEEEEEeCCCccccccccccCcCCCcEEEEEE
Q 036449            7 IKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVF-DNFSANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAF   85 (197)
Q Consensus         7 ~~i~v~G~~~~GKstli~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~   85 (197)
                      +||+++|++|||||||++++.+..+...+.++.+ +.....+.+++..+.+++||+||++.+..++..+++.+|++++|+
T Consensus         1 ~ki~liG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~~~~~~~~~~~~~ii~v~   80 (161)
T cd01861           1 HKLVFLGDQSVGKTSIITRFMYDTFDNQYQATIGIDFLSKTMYLEDKTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVY   80 (161)
T ss_pred             CEEEEECCCCCCHHHHHHHHHcCCCCccCCCceeeeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhccCCEEEEEE
Confidence            4899999999999999999999988777677765 344556677787788999999999999999999999999999999


Q ss_pred             eCCCchhHHHHHHHHHHHHhhhC-CCCCEEEEeeCCcccCCcccccCCCCCCcccHHHHHHHHHHhCCCceEEeccCCCC
Q 036449           86 SLISKASYENVSKKWIPELKHYA-PGVPIILVGTKLDLRDDKQFFIDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQQ  164 (197)
Q Consensus        86 d~~~~~s~~~~~~~~~~~i~~~~-~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~  164 (197)
                      |++++++++.+ ..|+..+.... .+.|+++++||+|+.+...          ...++...+++..+. +++++||+++.
T Consensus        81 d~~~~~s~~~~-~~~~~~~~~~~~~~~~iilv~nK~D~~~~~~----------~~~~~~~~~~~~~~~-~~~~~Sa~~~~  148 (161)
T cd01861          81 DITNRQSFDNT-DKWIDDVRDERGNDVIIVLVGNKTDLSDKRQ----------VSTEEGEKKAKELNA-MFIETSAKAGH  148 (161)
T ss_pred             ECcCHHHHHHH-HHHHHHHHHhCCCCCEEEEEEEChhccccCc----------cCHHHHHHHHHHhCC-EEEEEeCCCCC
Confidence            99999999998 68888776655 4799999999999964433          566777888888886 89999999999


Q ss_pred             CHHHHHHHHHHHH
Q 036449          165 NVKAVFDAAIRVV  177 (197)
Q Consensus       165 ~i~~l~~~i~~~~  177 (197)
                      |++++|+++.+.+
T Consensus       149 ~v~~l~~~i~~~l  161 (161)
T cd01861         149 NVKELFRKIASAL  161 (161)
T ss_pred             CHHHHHHHHHHhC
Confidence            9999999998753

Rab6 is involved in microtubule-dependent transport pathways through the Golgi and from endosomes to the Golgi. Rab6A of mammals is implicated in retrograde transport through the Golgi stack, and is also required for a slow, COPI-independent, retrograde transport pathway from the Golgi to the endoplasmic reticulum (ER). This pathway may allow Golgi residents to be recycled through the ER for scrutiny by ER quality-control systems. Yeast Ypt6p, the homolog of the mammalian Rab6 GTPase, is not essential for cell viability. Ypt6p acts in endosome-to-Golgi, in intra-Golgi retrograde transport, and possibly also in Golgi-to-ER trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate

>cd04137 RheB Rheb (Ras Homolog Enriched in Brain) subfamily

Probab=100.00  E-value=1.2e-32  Score=192.44  Aligned_cols=177  Identities=33%  Similarity=0.535  Sum_probs=146.8

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhhCCCCCCCCCceeeeeeEEEEECCeEEEEEEEeCCCccccccccccCcCCCcEEEEEEe
Q 036449            7 IKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFS   86 (197)
Q Consensus         7 ~~i~v~G~~~~GKstli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d   86 (197)
                      .||+++|.+|+|||||++++....+...+.++....+......++..+.+++||+||++++...+..++..+++++++||
T Consensus         2 ~kv~l~G~~g~GKTtl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d   81 (180)
T cd04137           2 RKIAVLGSRSVGKSSLTVQFVEGHFVESYYPTIENTFSKIIRYKGQDYHLEIVDTAGQDEYSILPQKYSIGIHGYILVYS   81 (180)
T ss_pred             eEEEEECCCCCCHHHHHHHHHhCCCccccCcchhhhEEEEEEECCEEEEEEEEECCChHhhHHHHHHHHhhCCEEEEEEE
Confidence            58999999999999999999999888878888876666777778778889999999999999888889999999999999


Q ss_pred             CCCchhHHHHHHHHHHHHhhhC--CCCCEEEEeeCCcccCCcccccCCCCCCcccHHHHHHHHHHhCCCceEEeccCCCC
Q 036449           87 LISKASYENVSKKWIPELKHYA--PGVPIILVGTKLDLRDDKQFFIDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQQ  164 (197)
Q Consensus        87 ~~~~~s~~~~~~~~~~~i~~~~--~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~  164 (197)
                      +++..+++.+ ..|+..+....  .+.|+++++||+|+...+.          ...++...+++..+. +++++||+++.
T Consensus        82 ~~~~~~~~~~-~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~~~----------~~~~~~~~~~~~~~~-~~~~~Sa~~~~  149 (180)
T cd04137          82 VTSRKSFEVV-KVIYDKILDMLGKESVPIVLVGNKSDLHTQRQ----------VSTEEGKELAESWGA-AFLESSARENE  149 (180)
T ss_pred             CCCHHHHHHH-HHHHHHHHHhcCCCCCCEEEEEEchhhhhcCc----------cCHHHHHHHHHHcCC-eEEEEeCCCCC
Confidence            9999999998 55545554432  5789999999999965332          445566777777776 89999999999


Q ss_pred             CHHHHHHHHHHHHcCCCchhhhhhccccccccC
Q 036449          165 NVKAVFDAAIRVVLQPPKTKKKKNKAQKACSIL  197 (197)
Q Consensus       165 ~i~~l~~~i~~~~~~~~~~~~~~~~~~~~c~~~  197 (197)
                      |+.++|.++.+.+.......  ....+.+|.+|
T Consensus       150 gv~~l~~~l~~~~~~~~~~~--~~~~~~~~~~~  180 (180)
T cd04137         150 NVEEAFELLIEEIEKVENPL--DPGQKKKCSIM  180 (180)
T ss_pred             CHHHHHHHHHHHHHHhcCCC--CCCCCCCceeC
Confidence            99999999999887665443  23467789887

Rheb was initially identified in rat brain, where its expression is elevated by seizures or by long-term potentiation. It is expressed ubiquitously, with elevated levels in muscle and brain. Rheb functions as an important mediator between the tuberous sclerosis complex proteins, TSC1 and TSC2, and the mammalian target of rapamycin (TOR) kinase to stimulate cell growth. TOR kinase regulates cell growth by controlling nutrient availability, growth factors, and the energy status of the cell. TSC1 and TSC2 form a dimeric complex that has tumor suppressor activity, and TSC2 is a GTPase activating protein (GAP) for Rheb. The TSC1/TSC2 complex inhibits the activation of TOR kinase through Rheb. Rheb has also been shown to induce the formation of large cytoplasmic vacuoles in a process that is dependent on the GTPase cycle of Rheb, but independent of the TOR kinase, suggesting Rheb plays a role in endocytic trafficking that le

>cd01860 Rab5_related Rab5-related subfamily

Probab=100.00  E-value=2.7e-32  Score=187.63  Aligned_cols=160  Identities=36%  Similarity=0.647  Sum_probs=139.4

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHhhCCCCCCCCCceeeee-eEEEEECCeEEEEEEEeCCCccccccccccCcCCCcEEEEE
Q 036449            6 FIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNF-SANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILA   84 (197)
Q Consensus         6 ~~~i~v~G~~~~GKstli~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v   84 (197)
                      .+||+++|++|+|||||++++..+.+...+.++.+..+ ...+.+++..+.+.+||+||++++...+..+++++|++++|
T Consensus         1 ~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~v~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v   80 (163)
T cd01860           1 QFKLVLLGDSSVGKSSLVLRFVKNEFSENQESTIGAAFLTQTVNLDDTTVKFEIWDTAGQERYRSLAPMYYRGAAAAIVV   80 (163)
T ss_pred             CeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCchHHHHHHHHHHhccCCEEEEE
Confidence            37999999999999999999999998776677775433 56677888889999999999999998888899999999999


Q ss_pred             EeCCCchhHHHHHHHHHHHHhhhC-CCCCEEEEeeCCcccCCcccccCCCCCCcccHHHHHHHHHHhCCCceEEeccCCC
Q 036449           85 FSLISKASYENVSKKWIPELKHYA-PGVPIILVGTKLDLRDDKQFFIDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQ  163 (197)
Q Consensus        85 ~d~~~~~s~~~~~~~~~~~i~~~~-~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~  163 (197)
                      +|++++++++.+ ..|+..+.... ++.|+++++||+|+.....          ...++...++...+. +++++||++|
T Consensus        81 ~d~~~~~s~~~~-~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~----------~~~~~~~~~~~~~~~-~~~~~Sa~~~  148 (163)
T cd01860          81 YDITSEESFEKA-KSWVKELQRNASPNIIIALVGNKADLESKRQ----------VSTEEAQEYADENGL-LFFETSAKTG  148 (163)
T ss_pred             EECcCHHHHHHH-HHHHHHHHHhCCCCCeEEEEEECccccccCc----------CCHHHHHHHHHHcCC-EEEEEECCCC
Confidence            999999999998 78888887766 7899999999999875332          556777888888886 8999999999


Q ss_pred             CCHHHHHHHHHHHH
Q 036449          164 QNVKAVFDAAIRVV  177 (197)
Q Consensus       164 ~~i~~l~~~i~~~~  177 (197)
                      .|+.++|+++++.+
T Consensus       149 ~~v~~l~~~l~~~l  162 (163)
T cd01860         149 ENVNELFTEIAKKL  162 (163)
T ss_pred             CCHHHHHHHHHHHh
Confidence            99999999999875

This subfamily includes Rab5 and Rab22 of mammals, Ypt51/Ypt52/Ypt53 of yeast, and RabF of plants. The members of this subfamily are involved in endocytosis and endocytic-sorting pathways. In mammals, Rab5 GTPases localize to early endosomes and regulate fusion of clathrin-coated vesicles to early endosomes and fusion between early endosomes. In yeast, Ypt51p family members similarly regulate membrane trafficking through prevacuolar compartments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence mo

>KOG0395 consensus Ras-related GTPase [General function prediction only]

Probab=100.00  E-value=9.3e-33  Score=193.37  Aligned_cols=163  Identities=37%  Similarity=0.615  Sum_probs=150.6

Q ss_pred             ceeEEEEEcCCCCCHHHHHHHHhhCCCCCCCCCceeeeeeEEEEECCeEEEEEEEeCCCccccccccccCcCCCcEEEEE
Q 036449            5 RFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILA   84 (197)
Q Consensus         5 ~~~~i~v~G~~~~GKstli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v   84 (197)
                      +.+||+++|.+|+|||+|..+|..+.|.+.|.||+++.+.....+++..+.+.|+||+|+++|..+...++.++|++++|
T Consensus         2 ~~~kvvvlG~~gVGKSal~~qf~~~~f~~~y~ptied~y~k~~~v~~~~~~l~ilDt~g~~~~~~~~~~~~~~~~gF~lV   81 (196)
T KOG0395|consen    2 REYKVVVLGAGGVGKSALTIQFLTGRFVEDYDPTIEDSYRKELTVDGEVCMLEILDTAGQEEFSAMRDLYIRNGDGFLLV   81 (196)
T ss_pred             CceEEEEECCCCCCcchheeeecccccccccCCCccccceEEEEECCEEEEEEEEcCCCcccChHHHHHhhccCcEEEEE
Confidence            56899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EeCCCchhHHHHHHHHHHHHh-hhC-CCCCEEEEeeCCcccCCcccccCCCCCCcccHHHHHHHHHHhCCCceEEeccCC
Q 036449           85 FSLISKASYENVSKKWIPELK-HYA-PGVPIILVGTKLDLRDDKQFFIDHPGAVPISTAQGEELRKLIGAPAYIECSSKT  162 (197)
Q Consensus        85 ~d~~~~~s~~~~~~~~~~~i~-~~~-~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~  162 (197)
                      |+++++.||+.+ ..+...|. ... ..+|+++||||+|+...+.          +..++++.++..+++ +|+|+||+.
T Consensus        82 ysitd~~SF~~~-~~l~~~I~r~~~~~~~PivlVGNK~Dl~~~R~----------V~~eeg~~la~~~~~-~f~E~Sak~  149 (196)
T KOG0395|consen   82 YSITDRSSFEEA-KQLREQILRVKGRDDVPIILVGNKCDLERERQ----------VSEEEGKALARSWGC-AFIETSAKL  149 (196)
T ss_pred             EECCCHHHHHHH-HHHHHHHHHhhCcCCCCEEEEEEcccchhccc----------cCHHHHHHHHHhcCC-cEEEeeccC
Confidence            999999999999 66666663 233 4689999999999988665          899999999999999 699999999


Q ss_pred             CCCHHHHHHHHHHHHcC
Q 036449          163 QQNVKAVFDAAIRVVLQ  179 (197)
Q Consensus       163 ~~~i~~l~~~i~~~~~~  179 (197)
                      +.+++++|..+++.+..
T Consensus       150 ~~~v~~~F~~L~r~~~~  166 (196)
T KOG0395|consen  150 NYNVDEVFYELVREIRL  166 (196)
T ss_pred             CcCHHHHHHHHHHHHHh
Confidence            99999999999998776

>KOG0091 consensus GTPase Rab39, small G protein superfamily [General function prediction only]

Probab=100.00  E-value=2.2e-33  Score=183.28  Aligned_cols=164  Identities=32%  Similarity=0.548  Sum_probs=144.2

Q ss_pred             ceeEEEEEcCCCCCHHHHHHHHhhCCCCCCCCCceee-eeeEEEEE-CCeEEEEEEEeCCCccccccccccCcCCCcEEE
Q 036449            5 RFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFD-NFSANVVV-NGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFI   82 (197)
Q Consensus         5 ~~~~i~v~G~~~~GKstli~~~~~~~~~~~~~~~~~~-~~~~~~~~-~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i   82 (197)
                      ..++..++|.+-+|||+|++.|..+++.+-..||.+. .+...+.. +|..+++++|||+||++|++....+++++-+++
T Consensus         7 yqfrlivigdstvgkssll~~ft~gkfaelsdptvgvdffarlie~~pg~riklqlwdtagqerfrsitksyyrnsvgvl   86 (213)
T KOG0091|consen    7 YQFRLIVIGDSTVGKSSLLRYFTEGKFAELSDPTVGVDFFARLIELRPGYRIKLQLWDTAGQERFRSITKSYYRNSVGVL   86 (213)
T ss_pred             EEEEEEEEcCCcccHHHHHHHHhcCcccccCCCccchHHHHHHHhcCCCcEEEEEEeeccchHHHHHHHHHHhhcccceE
Confidence            4689999999999999999999999999988899864 44444443 578899999999999999999999999999999


Q ss_pred             EEEeCCCchhHHHHHHHHHHHHhhhC--CC-CCEEEEeeCCcccCCcccccCCCCCCcccHHHHHHHHHHhCCCceEEec
Q 036449           83 LAFSLISKASYENVSKKWIPELKHYA--PG-VPIILVGTKLDLRDDKQFFIDHPGAVPISTAQGEELRKLIGAPAYIECS  159 (197)
Q Consensus        83 ~v~d~~~~~s~~~~~~~~~~~i~~~~--~~-~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s  159 (197)
                      +|||++|++||+.+ ..|+..-....  |. +.+.+||+|+|+...++          ++.++++.+++..|. .|+|+|
T Consensus        87 lvyditnr~sfehv-~~w~~ea~m~~q~P~k~VFlLVGhKsDL~SqRq----------Vt~EEaEklAa~hgM-~FVETS  154 (213)
T KOG0091|consen   87 LVYDITNRESFEHV-ENWVKEAAMATQGPDKVVFLLVGHKSDLQSQRQ----------VTAEEAEKLAASHGM-AFVETS  154 (213)
T ss_pred             EEEeccchhhHHHH-HHHHHHHHHhcCCCCeeEEEEeccccchhhhcc----------ccHHHHHHHHHhcCc-eEEEec
Confidence            99999999999999 78877666554  54 44579999999988776          999999999999999 899999


Q ss_pred             cCCCCCHHHHHHHHHHHHcCC
Q 036449          160 SKTQQNVKAVFDAAIRVVLQP  180 (197)
Q Consensus       160 a~~~~~i~~l~~~i~~~~~~~  180 (197)
                      |++|.|+++.|..|.+.+...
T Consensus       155 ak~g~NVeEAF~mlaqeIf~~  175 (213)
T KOG0091|consen  155 AKNGCNVEEAFDMLAQEIFQA  175 (213)
T ss_pred             ccCCCcHHHHHHHHHHHHHHH
Confidence            999999999999999877654

>cd01862 Rab7 Rab7 subfamily

Probab=100.00  E-value=4.8e-32  Score=187.94  Aligned_cols=164  Identities=32%  Similarity=0.600  Sum_probs=138.0

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhhCCCCCCCCCceeee-eeEEEEECCeEEEEEEEeCCCccccccccccCcCCCcEEEEEE
Q 036449            7 IKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDN-FSANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAF   85 (197)
Q Consensus         7 ~~i~v~G~~~~GKstli~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~   85 (197)
                      +||+++|++|||||||++++.+..+...+.++.+.. ......+++..+.+++||+||++.+..++..+++++|++|++|
T Consensus         1 ~ki~viG~~~~GKSsl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~   80 (172)
T cd01862           1 LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVTVDDKLVTLQIWDTAGQERFQSLGVAFYRGADCCVLVY   80 (172)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCCCcCcCCccceEEEEEEEEECCEEEEEEEEeCCChHHHHhHHHHHhcCCCEEEEEE
Confidence            589999999999999999999998887777776543 3455677888889999999999999999999999999999999


Q ss_pred             eCCCchhHHHHHHHHHHHHhhhC-----CCCCEEEEeeCCcccCCcccccCCCCCCcccHHHHHHHHHHhCCCceEEecc
Q 036449           86 SLISKASYENVSKKWIPELKHYA-----PGVPIILVGTKLDLRDDKQFFIDHPGAVPISTAQGEELRKLIGAPAYIECSS  160 (197)
Q Consensus        86 d~~~~~s~~~~~~~~~~~i~~~~-----~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa  160 (197)
                      |++++++++.. ..|...+....     .+.|+++|+||+|+.....          ...++...+.+..+..+++++||
T Consensus        81 d~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~----------~~~~~~~~~~~~~~~~~~~~~Sa  149 (172)
T cd01862          81 DVTNPKSFESL-DSWRDEFLIQASPSDPENFPFVVLGNKIDLEEKRQ----------VSTKKAQQWCQSNGNIPYFETSA  149 (172)
T ss_pred             ECCCHHHHHHH-HHHHHHHHHhcCccCCCCceEEEEEECcccccccc----------cCHHHHHHHHHHcCCceEEEEEC
Confidence            99999999887 67776655443     2799999999999975332          45666777888887558999999


Q ss_pred             CCCCCHHHHHHHHHHHHcCCC
Q 036449          161 KTQQNVKAVFDAAIRVVLQPP  181 (197)
Q Consensus       161 ~~~~~i~~l~~~i~~~~~~~~  181 (197)
                      ++|.|++++|+++.+.+.+..
T Consensus       150 ~~~~gv~~l~~~i~~~~~~~~  170 (172)
T cd01862         150 KEAINVEQAFETIARKALEQE  170 (172)
T ss_pred             CCCCCHHHHHHHHHHHHHhcc
Confidence            999999999999999887653

Rab7 is a small Rab GTPase that regulates vesicular traffic from early to late endosomal stages of the endocytic pathway. The yeast Ypt7 and mammalian Rab7 are both involved in transport to the vacuole/lysosome, whereas Ypt7 is also required for homotypic vacuole fusion. Mammalian Rab7 is an essential participant in the autophagic pathway for sequestration and targeting of cytoplasmic components to the lytic compartment. Mammalian Rab7 is also proposed to function as a tumor suppressor. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-

>cd04148 RGK RGK subfamily

Probab=100.00  E-value=4.2e-32  Score=194.93  Aligned_cols=160  Identities=26%  Similarity=0.416  Sum_probs=133.6

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhhCCCC-CCCCCcee-eeeeEEEEECCeEEEEEEEeCCCccccccccccCcC-CCcEEEE
Q 036449            7 IKCVTVGDGAVGKTCLLISYTSNTFP-TDYVPTVF-DNFSANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYR-GADVFIL   83 (197)
Q Consensus         7 ~~i~v~G~~~~GKstli~~~~~~~~~-~~~~~~~~-~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~-~~~~~i~   83 (197)
                      +||+++|.+|||||||++++..+.+. ..+.++.+ +.+...+.+++..+.+.+||+||++.  .....++. ++|++++
T Consensus         1 ~KI~lvG~~gvGKTsLi~~~~~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~i~Dt~G~~~--~~~~~~~~~~ad~iil   78 (221)
T cd04148           1 YRVVMLGSPGVGKSSLASQFTSGEYDDHAYDASGDDDTYERTVSVDGEESTLVVIDHWEQEM--WTEDSCMQYQGDAFVV   78 (221)
T ss_pred             CEEEEECCCCCcHHHHHHHHhcCCcCccCcCCCccccceEEEEEECCEEEEEEEEeCCCcch--HHHhHHhhcCCCEEEE
Confidence            58999999999999999999988876 66666664 55666777888889999999999982  23344556 8999999


Q ss_pred             EEeCCCchhHHHHHHHHHHHHhhhC--CCCCEEEEeeCCcccCCcccccCCCCCCcccHHHHHHHHHHhCCCceEEeccC
Q 036449           84 AFSLISKASYENVSKKWIPELKHYA--PGVPIILVGTKLDLRDDKQFFIDHPGAVPISTAQGEELRKLIGAPAYIECSSK  161 (197)
Q Consensus        84 v~d~~~~~s~~~~~~~~~~~i~~~~--~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~  161 (197)
                      |||++++.+++.+ ..|+..+....  .+.|+++|+||+|+.+.+.          +..+++..++...++ +|+++||+
T Consensus        79 V~d~td~~S~~~~-~~~~~~l~~~~~~~~~piilV~NK~Dl~~~~~----------v~~~~~~~~a~~~~~-~~~e~SA~  146 (221)
T cd04148          79 VYSVTDRSSFERA-SELRIQLRRNRQLEDRPIILVGNKSDLARSRE----------VSVQEGRACAVVFDC-KFIETSAG  146 (221)
T ss_pred             EEECCCHHHHHHH-HHHHHHHHHhcCCCCCCEEEEEEChhccccce----------ecHHHHHHHHHHcCC-eEEEecCC
Confidence            9999999999988 67888777654  5799999999999976543          667777888888887 89999999


Q ss_pred             CCCCHHHHHHHHHHHHcCC
Q 036449          162 TQQNVKAVFDAAIRVVLQP  180 (197)
Q Consensus       162 ~~~~i~~l~~~i~~~~~~~  180 (197)
                      ++.|++++|+++++.+...
T Consensus       147 ~~~gv~~l~~~l~~~~~~~  165 (221)
T cd04148         147 LQHNVDELLEGIVRQIRLR  165 (221)
T ss_pred             CCCCHHHHHHHHHHHHHhh
Confidence            9999999999999988643

The RGK (Rem, Rem2, Rad, Gem/Kir) subfamily of Ras GTPases are expressed in a tissue-specific manner and are dynamically regulated by transcriptional and posttranscriptional mechanisms in response to environmental cues. RGK proteins bind to the beta subunit of L-type calcium channels, causing functional down-regulation of these voltage-dependent calcium channels, and either termination of calcium-dependent secretion or modulation of electrical conduction and contractile function. Inhibition of L-type calcium channels by Rem2 may provide a mechanism for modulating calcium-triggered exocytosis in hormone-secreting cells, and has been proposed to influence the secretion of insulin in pancreatic beta cells. RGK proteins also interact with and inhibit the Rho/Rho kinase pathway to modulate remodeling of the cytoskeleton. Two characteristics of RGK proteins cited in the literature are N-terminal and C-terminal extensions beyond the GTPase domain typical of Ra

>PLN03118 Rab family protein; Provisional

Probab=100.00  E-value=5.8e-32  Score=193.35  Aligned_cols=165  Identities=33%  Similarity=0.616  Sum_probs=138.2

Q ss_pred             ceeEEEEEcCCCCCHHHHHHHHhhCCCCCCCCCceeeee-eEEEEECCeEEEEEEEeCCCccccccccccCcCCCcEEEE
Q 036449            5 RFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNF-SANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFIL   83 (197)
Q Consensus         5 ~~~~i~v~G~~~~GKstli~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~   83 (197)
                      ..+||+++|.+|||||||++++..+.+. .+.++.+..+ ...+.+++..+.+.+||+||++.|..++..+++++|++|+
T Consensus        13 ~~~kv~ivG~~~vGKTsli~~l~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~vl   91 (211)
T PLN03118         13 LSFKILLIGDSGVGKSSLLVSFISSSVE-DLAPTIGVDFKIKQLTVGGKRLKLTIWDTAGQERFRTLTSSYYRNAQGIIL   91 (211)
T ss_pred             cceEEEEECcCCCCHHHHHHHHHhCCCC-CcCCCceeEEEEEEEEECCEEEEEEEEECCCchhhHHHHHHHHhcCCEEEE
Confidence            4589999999999999999999988774 4566665443 4456677778899999999999999999999999999999


Q ss_pred             EEeCCCchhHHHHHHHHHHHHhhhC--CCCCEEEEeeCCcccCCcccccCCCCCCcccHHHHHHHHHHhCCCceEEeccC
Q 036449           84 AFSLISKASYENVSKKWIPELKHYA--PGVPIILVGTKLDLRDDKQFFIDHPGAVPISTAQGEELRKLIGAPAYIECSSK  161 (197)
Q Consensus        84 v~d~~~~~s~~~~~~~~~~~i~~~~--~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~  161 (197)
                      |||++++++++.+...|...+....  .+.|+++|+||+|+.....          +..+++..++...+. +|+++||+
T Consensus        92 v~D~~~~~sf~~~~~~~~~~~~~~~~~~~~~~ilv~NK~Dl~~~~~----------i~~~~~~~~~~~~~~-~~~e~SAk  160 (211)
T PLN03118         92 VYDVTRRETFTNLSDVWGKEVELYSTNQDCVKMLVGNKVDRESERD----------VSREEGMALAKEHGC-LFLECSAK  160 (211)
T ss_pred             EEECCCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccCc----------cCHHHHHHHHHHcCC-EEEEEeCC
Confidence            9999999999998666777666543  4689999999999976443          566777788888887 89999999


Q ss_pred             CCCCHHHHHHHHHHHHcCCC
Q 036449          162 TQQNVKAVFDAAIRVVLQPP  181 (197)
Q Consensus       162 ~~~~i~~l~~~i~~~~~~~~  181 (197)
                      ++.|++++|++|.+.+...+
T Consensus       161 ~~~~v~~l~~~l~~~~~~~~  180 (211)
T PLN03118        161 TRENVEQCFEELALKIMEVP  180 (211)
T ss_pred             CCCCHHHHHHHHHHHHHhhh
Confidence            99999999999999886643

>cd04123 Rab21 Rab21 subfamily

Probab=100.00  E-value=7.3e-32  Score=185.16  Aligned_cols=159  Identities=36%  Similarity=0.667  Sum_probs=135.2

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhhCCCCCCCCCceeee-eeEEEEECCeEEEEEEEeCCCccccccccccCcCCCcEEEEEE
Q 036449            7 IKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDN-FSANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAF   85 (197)
Q Consensus         7 ~~i~v~G~~~~GKstli~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~   85 (197)
                      +||+++|.+|+|||||++++..+.+...+.++.... ......+.+..+.+.+||+||++.+..++..+++++|++++||
T Consensus         1 ~ki~i~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~   80 (162)
T cd04123           1 FKVVLLGEGRVGKTSLVLRYVENKFNEKHESTTQASFFQKTVNIGGKRIDLAIWDTAGQERYHALGPIYYRDADGAILVY   80 (162)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCCCCCcCCccceeEEEEEEEECCEEEEEEEEECCchHHHHHhhHHHhccCCEEEEEE
Confidence            589999999999999999999998876666666433 3445666677788999999999999999999999999999999


Q ss_pred             eCCCchhHHHHHHHHHHHHhhhC-CCCCEEEEeeCCcccCCcccccCCCCCCcccHHHHHHHHHHhCCCceEEeccCCCC
Q 036449           86 SLISKASYENVSKKWIPELKHYA-PGVPIILVGTKLDLRDDKQFFIDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQQ  164 (197)
Q Consensus        86 d~~~~~s~~~~~~~~~~~i~~~~-~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~  164 (197)
                      |++++++++.+ ..|+..+.... .+.|+++|+||+|+.....          ...++..++++..+. +++++||+++.
T Consensus        81 d~~~~~s~~~~-~~~~~~i~~~~~~~~piiiv~nK~D~~~~~~----------~~~~~~~~~~~~~~~-~~~~~s~~~~~  148 (162)
T cd04123          81 DITDADSFQKV-KKWIKELKQMRGNNISLVIVGNKIDLERQRV----------VSKSEAEEYAKSVGA-KHFETSAKTGK  148 (162)
T ss_pred             ECCCHHHHHHH-HHHHHHHHHhCCCCCeEEEEEECcccccccC----------CCHHHHHHHHHHcCC-EEEEEeCCCCC
Confidence            99999999998 67888887766 4789999999999975433          556677778888887 79999999999


Q ss_pred             CHHHHHHHHHHHH
Q 036449          165 NVKAVFDAAIRVV  177 (197)
Q Consensus       165 ~i~~l~~~i~~~~  177 (197)
                      |++++|+++.+.+
T Consensus       149 gi~~~~~~l~~~~  161 (162)
T cd04123         149 GIEELFLSLAKRM  161 (162)
T ss_pred             CHHHHHHHHHHHh
Confidence            9999999998875

The localization and function of Rab21 are not clearly defined, with conflicting data reported. Rab21 has been reported to localize in the ER in human intestinal epithelial cells, with partial colocalization with alpha-glucosidase, a late endosomal/lysosomal marker. More recently, Rab21 was shown to colocalize with and affect the morphology of early endosomes. In Dictyostelium, GTP-bound Rab21, together with two novel LIM domain proteins, LimF and ChLim, has been shown to regulate phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site

>cd04139 RalA_RalB RalA/RalB subfamily

Probab=100.00  E-value=7e-32  Score=185.67  Aligned_cols=160  Identities=36%  Similarity=0.622  Sum_probs=138.5

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhhCCCCCCCCCceeeeeeEEEEECCeEEEEEEEeCCCccccccccccCcCCCcEEEEEEe
Q 036449            7 IKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFS   86 (197)
Q Consensus         7 ~~i~v~G~~~~GKstli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d   86 (197)
                      +||+++|.+|||||||++++....+...+.++....+......++..+.+.+||+||++.+...+..+++.++++++|+|
T Consensus         1 ~ki~~~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d   80 (164)
T cd04139           1 YKVIVVGAGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEDVQLNILDTAGQEDYAAIRDNYHRSGEGFLLVFS   80 (164)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCCccccCCcchhhEEEEEEECCEEEEEEEEECCChhhhhHHHHHHhhcCCEEEEEEE
Confidence            58999999999999999999999998888888877777777788888999999999999999999999999999999999


Q ss_pred             CCCchhHHHHHHHHHHHHhhhC--CCCCEEEEeeCCcccCCcccccCCCCCCcccHHHHHHHHHHhCCCceEEeccCCCC
Q 036449           87 LISKASYENVSKKWIPELKHYA--PGVPIILVGTKLDLRDDKQFFIDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQQ  164 (197)
Q Consensus        87 ~~~~~s~~~~~~~~~~~i~~~~--~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~  164 (197)
                      ++++.++... ..|...+....  .+.|+++|+||+|+.....          ....+...+...++. +++++||+++.
T Consensus        81 ~~~~~s~~~~-~~~~~~~~~~~~~~~~piiiv~NK~D~~~~~~----------~~~~~~~~~~~~~~~-~~~~~Sa~~~~  148 (164)
T cd04139          81 ITDMESFTAT-AEFREQILRVKDDDNVPLLLVGNKCDLEDKRQ----------VSSEEAANLARQWGV-PYVETSAKTRQ  148 (164)
T ss_pred             CCCHHHHHHH-HHHHHHHHHhcCCCCCCEEEEEEccccccccc----------cCHHHHHHHHHHhCC-eEEEeeCCCCC
Confidence            9999999988 55666555542  5899999999999965322          445666777788887 89999999999


Q ss_pred             CHHHHHHHHHHHHc
Q 036449          165 NVKAVFDAAIRVVL  178 (197)
Q Consensus       165 ~i~~l~~~i~~~~~  178 (197)
                      |++++|+++.+.+.
T Consensus       149 gi~~l~~~l~~~~~  162 (164)
T cd04139         149 NVEKAFYDLVREIR  162 (164)
T ss_pred             CHHHHHHHHHHHHH
Confidence            99999999998775

The Ral (Ras-like) subfamily consists of the highly homologous RalA and RalB. Ral proteins are believed to play a crucial role in tumorigenesis, metastasis, endocytosis, and actin cytoskeleton dynamics. Despite their high sequence similarity (80% sequence identity), nonoverlapping and opposing functions have been assigned to RalA and RalBs in tumor migration. In human bladder and prostate cancer cells, RalB promotes migration while RalA inhibits it. A Ral-specific set of GEFs has been identified that are activated by Ras binding. This RalGEF activity is enhanced by Ras binding to another of its target proteins, phosphatidylinositol 3-kinase (PI3K). Ral effectors include RLIP76/RalBP1, a Rac/cdc42 GAP, and the exocyst (Sec6/8) complex, a heterooctomeric protein complex that is involved in tethering vesicles to specific sites on the plasma membrane prior to exocytosis. In rat kidney cells, RalB is required for functional assembly of the exo

>cd01863 Rab18 Rab18 subfamily

Probab=100.00  E-value=1.7e-31  Score=183.39  Aligned_cols=157  Identities=32%  Similarity=0.643  Sum_probs=134.8

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhhCCCCCCCCCceeeee-eEEEEECCeEEEEEEEeCCCccccccccccCcCCCcEEEEEE
Q 036449            7 IKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNF-SANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAF   85 (197)
Q Consensus         7 ~~i~v~G~~~~GKstli~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~   85 (197)
                      +||+++|++|+|||||++++....+...+.++.+..+ ...+.+++..+.+.+||+||++.+...+..+++.+|++++||
T Consensus         1 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~   80 (161)
T cd01863           1 LKILLIGDSGVGKSSLLLRFTDDTFDPDLAATIGVDFKVKTLTVDGKKVKLAIWDTAGQERFRTLTSSYYRGAQGVILVY   80 (161)
T ss_pred             CEEEEECCCCCCHHHHHHHHHcCCCCcccCCcccceEEEEEEEECCEEEEEEEEECCCchhhhhhhHHHhCCCCEEEEEE
Confidence            6899999999999999999999888776777775444 344556777789999999999999988888999999999999


Q ss_pred             eCCCchhHHHHHHHHHHHHhhhC--CCCCEEEEeeCCcccCCcccccCCCCCCcccHHHHHHHHHHhCCCceEEeccCCC
Q 036449           86 SLISKASYENVSKKWIPELKHYA--PGVPIILVGTKLDLRDDKQFFIDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQ  163 (197)
Q Consensus        86 d~~~~~s~~~~~~~~~~~i~~~~--~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~  163 (197)
                      |++++.+++.+ ..|+..+....  ++.|+++|+||+|+....           ...++...++...++ +++++||++|
T Consensus        81 d~~~~~s~~~~-~~~~~~i~~~~~~~~~~~~iv~nK~D~~~~~-----------~~~~~~~~~~~~~~~-~~~~~Sa~~~  147 (161)
T cd01863          81 DVTRRDTFTNL-ETWLNELETYSTNNDIVKMLVGNKIDKENRE-----------VTREEGLKFARKHNM-LFIETSAKTR  147 (161)
T ss_pred             ECCCHHHHHhH-HHHHHHHHHhCCCCCCcEEEEEECCcccccc-----------cCHHHHHHHHHHcCC-EEEEEecCCC
Confidence            99999999998 56888887765  589999999999997432           455677888888887 8999999999


Q ss_pred             CCHHHHHHHHHHH
Q 036449          164 QNVKAVFDAAIRV  176 (197)
Q Consensus       164 ~~i~~l~~~i~~~  176 (197)
                      .|++++++.+.+.
T Consensus       148 ~gi~~~~~~~~~~  160 (161)
T cd01863         148 DGVQQAFEELVEK  160 (161)
T ss_pred             CCHHHHHHHHHHh
Confidence            9999999999875

Mammalian Rab18 is implicated in endocytic transport and is expressed most highly in polarized epithelial cells. However, trypanosomal Rab, TbRAB18, is upregulated in the BSF (Blood Stream Form) stage and localized predominantly to elements of the Golgi complex. In human and mouse cells, Rab18 has been identified in lipid droplets, organelles that store neutral lipids. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of mos

>cd04114 Rab30 Rab30 subfamily

Probab=100.00  E-value=3.8e-31  Score=183.01  Aligned_cols=165  Identities=32%  Similarity=0.589  Sum_probs=137.7

Q ss_pred             CCC-CceeEEEEEcCCCCCHHHHHHHHhhCCCCCCCCCcee-eeeeEEEEECCeEEEEEEEeCCCccccccccccCcCCC
Q 036449            1 MSA-SRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVF-DNFSANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGA   78 (197)
Q Consensus         1 m~~-~~~~~i~v~G~~~~GKstli~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~   78 (197)
                      |++ ...++|+++|++|+|||||++++..+.+...+.++.+ +.....+.+++..+.+.+||+||++.+...+..++..+
T Consensus         1 ~~~~~~~~~v~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~   80 (169)
T cd04114           1 MEDYDFLFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEIKGEKIKLQIWDTAGQERFRSITQSYYRSA   80 (169)
T ss_pred             CCCCCceeEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhcCC
Confidence            665 5669999999999999999999998887766666664 33444566778788899999999999998888899999


Q ss_pred             cEEEEEEeCCCchhHHHHHHHHHHHHhhhC-CCCCEEEEeeCCcccCCcccccCCCCCCcccHHHHHHHHHHhCCCceEE
Q 036449           79 DVFILAFSLISKASYENVSKKWIPELKHYA-PGVPIILVGTKLDLRDDKQFFIDHPGAVPISTAQGEELRKLIGAPAYIE  157 (197)
Q Consensus        79 ~~~i~v~d~~~~~s~~~~~~~~~~~i~~~~-~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  157 (197)
                      |++++|||++++.+++.+ ..|+..+.... .+.|+++|+||+|+.+.+.          +..+....+.+.... ++++
T Consensus        81 d~~i~v~d~~~~~s~~~~-~~~~~~l~~~~~~~~~~i~v~NK~D~~~~~~----------i~~~~~~~~~~~~~~-~~~~  148 (169)
T cd04114          81 NALILTYDITCEESFRCL-PEWLREIEQYANNKVITILVGNKIDLAERRE----------VSQQRAEEFSDAQDM-YYLE  148 (169)
T ss_pred             CEEEEEEECcCHHHHHHH-HHHHHHHHHhCCCCCeEEEEEECcccccccc----------cCHHHHHHHHHHcCC-eEEE
Confidence            999999999999999988 67888877665 4799999999999965443          455566677776665 8999


Q ss_pred             eccCCCCCHHHHHHHHHHHH
Q 036449          158 CSSKTQQNVKAVFDAAIRVV  177 (197)
Q Consensus       158 ~sa~~~~~i~~l~~~i~~~~  177 (197)
                      +||++|.|++++|++|.+.+
T Consensus       149 ~Sa~~~~gv~~l~~~i~~~~  168 (169)
T cd04114         149 TSAKESDNVEKLFLDLACRL  168 (169)
T ss_pred             eeCCCCCCHHHHHHHHHHHh
Confidence            99999999999999999765

Rab30 appears to be associated with the Golgi stack. It is expressed in a wide variety of tissue types and in humans maps to chromosome 11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.

>cd01893 Miro1 Miro1 subfamily

Probab=100.00  E-value=3.6e-31  Score=182.64  Aligned_cols=164  Identities=29%  Similarity=0.428  Sum_probs=128.6

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhhCCCCCCCCCceeeeeeEEEEECCeEEEEEEEeCCCccccccccccCcCCCcEEEEEEe
Q 036449            7 IKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFS   86 (197)
Q Consensus         7 ~~i~v~G~~~~GKstli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d   86 (197)
                      +||+++|.+|||||||++++..+.+...++++. ..+.....+.+..+.+++||+||++.+...+..++..+|++++|||
T Consensus         1 ~kv~ivG~~~vGKTsl~~~l~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~~ilv~d   79 (166)
T cd01893           1 VRIVLIGDEGVGKSSLIMSLVSEEFPENVPRVL-PEITIPADVTPERVPTTIVDTSSRPQDRANLAAEIRKANVICLVYS   79 (166)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCcCCccCCCcc-cceEeeeeecCCeEEEEEEeCCCchhhhHHHhhhcccCCEEEEEEE
Confidence            489999999999999999999998876644433 3333444556677899999999998887777777899999999999


Q ss_pred             CCCchhHHHHHHHHHHHHhhhCCCCCEEEEeeCCcccCCcccccCCCCCCcccHHHHHHHHHHhC-CCceEEeccCCCCC
Q 036449           87 LISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPISTAQGEELRKLIG-APAYIECSSKTQQN  165 (197)
Q Consensus        87 ~~~~~s~~~~~~~~~~~i~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~sa~~~~~  165 (197)
                      ++++.+++.+...|+..+....++.|+++|+||+|+.+....        ....++...++..++ ..+++++||+++.|
T Consensus        80 ~~~~~s~~~~~~~~~~~i~~~~~~~pviiv~nK~Dl~~~~~~--------~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~  151 (166)
T cd01893          80 VDRPSTLERIRTKWLPLIRRLGVKVPIILVGNKSDLRDGSSQ--------AGLEEEMLPIMNEFREIETCVECSAKTLIN  151 (166)
T ss_pred             CCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEchhcccccch--------hHHHHHHHHHHHHHhcccEEEEeccccccC
Confidence            999999999866788888876678999999999999764320        011233334444443 23799999999999


Q ss_pred             HHHHHHHHHHHHcC
Q 036449          166 VKAVFDAAIRVVLQ  179 (197)
Q Consensus       166 i~~l~~~i~~~~~~  179 (197)
                      ++++|+.+.+.+.+
T Consensus       152 v~~lf~~~~~~~~~  165 (166)
T cd01893         152 VSEVFYYAQKAVLH  165 (166)
T ss_pred             HHHHHHHHHHHhcC
Confidence            99999999988765

Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the N-terminal GTPase domain of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.

>PLN00223 ADP-ribosylation factor; Provisional

Probab=100.00  E-value=9.2e-32  Score=187.75  Aligned_cols=158  Identities=16%  Similarity=0.230  Sum_probs=121.2

Q ss_pred             CceeEEEEEcCCCCCHHHHHHHHhhCCCCCCCCCceeeeeeEEEEECCeEEEEEEEeCCCccccccccccCcCCCcEEEE
Q 036449            4 SRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFIL   83 (197)
Q Consensus         4 ~~~~~i~v~G~~~~GKstli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~   83 (197)
                      .+.+||+++|.+|||||||++++..+.+. .+.||.+..+. .+..  ..+.+++||+||++.++.+|..++.++|++|+
T Consensus        15 ~~~~ki~ivG~~~~GKTsl~~~l~~~~~~-~~~pt~g~~~~-~~~~--~~~~~~i~D~~Gq~~~~~~~~~~~~~a~~iI~   90 (181)
T PLN00223         15 KKEMRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNVE-TVEY--KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIF   90 (181)
T ss_pred             CCccEEEEECCCCCCHHHHHHHHccCCCc-cccCCcceeEE-EEEE--CCEEEEEEECCCCHHHHHHHHHHhccCCEEEE
Confidence            45689999999999999999999887775 35677654432 2333  34789999999999999999999999999999


Q ss_pred             EEeCCCchhHHHHHHHHHHHHhhhC-CCCCEEEEeeCCcccCCcccccCCCCCCcccHHHHHHHHHHhCCC-------ce
Q 036449           84 AFSLISKASYENVSKKWIPELKHYA-PGVPIILVGTKLDLRDDKQFFIDHPGAVPISTAQGEELRKLIGAP-------AY  155 (197)
Q Consensus        84 v~d~~~~~s~~~~~~~~~~~i~~~~-~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~  155 (197)
                      |||+++++++..+...+...+.... ++.|++|++||+|+....            ..+   ++.+..+..       .+
T Consensus        91 V~D~s~~~s~~~~~~~l~~~l~~~~~~~~piilv~NK~Dl~~~~------------~~~---~~~~~l~l~~~~~~~~~~  155 (181)
T PLN00223         91 VVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM------------NAA---EITDKLGLHSLRQRHWYI  155 (181)
T ss_pred             EEeCCcHHHHHHHHHHHHHHhcCHhhCCCCEEEEEECCCCCCCC------------CHH---HHHHHhCccccCCCceEE
Confidence            9999999999988444444443322 689999999999996532            222   233333331       35


Q ss_pred             EEeccCCCCCHHHHHHHHHHHHcCC
Q 036449          156 IECSSKTQQNVKAVFDAAIRVVLQP  180 (197)
Q Consensus       156 ~~~sa~~~~~i~~l~~~i~~~~~~~  180 (197)
                      +++||++|+|+.++|++|++.+..+
T Consensus       156 ~~~Sa~~g~gv~e~~~~l~~~~~~~  180 (181)
T PLN00223        156 QSTCATSGEGLYEGLDWLSNNIANK  180 (181)
T ss_pred             EeccCCCCCCHHHHHHHHHHHHhhc
Confidence            6899999999999999999887653

>KOG0081 consensus GTPase Rab27, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=1e-33  Score=184.10  Aligned_cols=163  Identities=37%  Similarity=0.619  Sum_probs=143.1

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHhhCCCCCCCCCceeeeeeEE-EEE---------CCeEEEEEEEeCCCccccccccccCc
Q 036449            6 FIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSAN-VVV---------NGSTVNLGLWDTAGQEDYNRLRPLSY   75 (197)
Q Consensus         6 ~~~i~v~G~~~~GKstli~~~~~~~~~~~~~~~~~~~~~~~-~~~---------~~~~~~~~i~D~~G~~~~~~~~~~~~   75 (197)
                      -++.+.+|.+|+||||++.++..++|......|.+..+... +.+         .+..+.+++|||+||++|+++...++
T Consensus         9 likfLaLGDSGVGKTs~Ly~YTD~~F~~qFIsTVGIDFreKrvvY~s~gp~g~gr~~rihLQlWDTAGQERFRSLTTAFf   88 (219)
T KOG0081|consen    9 LIKFLALGDSGVGKTSFLYQYTDGKFNTQFISTVGIDFREKRVVYNSSGPGGGGRGQRIHLQLWDTAGQERFRSLTTAFF   88 (219)
T ss_pred             HHHHHhhccCCCCceEEEEEecCCcccceeEEEeecccccceEEEeccCCCCCCcceEEEEeeeccccHHHHHHHHHHHH
Confidence            47889999999999999999999999999888887666443 222         23578999999999999999999999


Q ss_pred             CCCcEEEEEEeCCCchhHHHHHHHHHHHHhhhC--CCCCEEEEeeCCcccCCcccccCCCCCCcccHHHHHHHHHHhCCC
Q 036449           76 RGADVFILAFSLISKASYENVSKKWIPELKHYA--PGVPIILVGTKLDLRDDKQFFIDHPGAVPISTAQGEELRKLIGAP  153 (197)
Q Consensus        76 ~~~~~~i~v~d~~~~~s~~~~~~~~~~~i~~~~--~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  153 (197)
                      +.+=++++++|+++.+||..+ ..|+..++...  .+.-+++++||+|+...+.          ++.+++..++++++. 
T Consensus        89 RDAMGFlLiFDlT~eqSFLnv-rnWlSQL~~hAYcE~PDivlcGNK~DL~~~R~----------Vs~~qa~~La~kygl-  156 (219)
T KOG0081|consen   89 RDAMGFLLIFDLTSEQSFLNV-RNWLSQLQTHAYCENPDIVLCGNKADLEDQRV----------VSEDQAAALADKYGL-  156 (219)
T ss_pred             HhhccceEEEeccchHHHHHH-HHHHHHHHHhhccCCCCEEEEcCccchhhhhh----------hhHHHHHHHHHHhCC-
Confidence            999999999999999999999 89999998766  6888999999999988765          899999999999999 


Q ss_pred             ceEEeccCCCCCHHHHHHHHHHHHcCC
Q 036449          154 AYIECSSKTQQNVKAVFDAAIRVVLQP  180 (197)
Q Consensus       154 ~~~~~sa~~~~~i~~l~~~i~~~~~~~  180 (197)
                      ||||+||-+|.|+++..+.+...+.++
T Consensus       157 PYfETSA~tg~Nv~kave~LldlvM~R  183 (219)
T KOG0081|consen  157 PYFETSACTGTNVEKAVELLLDLVMKR  183 (219)
T ss_pred             CeeeeccccCcCHHHHHHHHHHHHHHH
Confidence            999999999999998888777665543

>cd04149 Arf6 Arf6 subfamily

Probab=100.00  E-value=9.5e-32  Score=185.67  Aligned_cols=155  Identities=17%  Similarity=0.223  Sum_probs=120.2

Q ss_pred             CceeEEEEEcCCCCCHHHHHHHHhhCCCCCCCCCceeeeeeEEEEECCeEEEEEEEeCCCccccccccccCcCCCcEEEE
Q 036449            4 SRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFIL   83 (197)
Q Consensus         4 ~~~~~i~v~G~~~~GKstli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~   83 (197)
                      ++.++|+++|.+|||||||++++..+.+.. +.||.+..+. ....  ..+.+++||+||++.++.++..++.++|++|+
T Consensus         7 ~~~~kv~i~G~~~~GKTsli~~l~~~~~~~-~~~t~g~~~~-~~~~--~~~~~~l~Dt~G~~~~~~~~~~~~~~a~~ii~   82 (168)
T cd04149           7 NKEMRILMLGLDAAGKTTILYKLKLGQSVT-TIPTVGFNVE-TVTY--KNVKFNVWDVGGQDKIRPLWRHYYTGTQGLIF   82 (168)
T ss_pred             CCccEEEEECcCCCCHHHHHHHHccCCCcc-ccCCcccceE-EEEE--CCEEEEEEECCCCHHHHHHHHHHhccCCEEEE
Confidence            467999999999999999999998877654 4566654432 2223  34789999999999999999999999999999


Q ss_pred             EEeCCCchhHHHHHHHHHHHHhhh-CCCCCEEEEeeCCcccCCcccccCCCCCCcccHHHHHHHHHH-----hCCCceEE
Q 036449           84 AFSLISKASYENVSKKWIPELKHY-APGVPIILVGTKLDLRDDKQFFIDHPGAVPISTAQGEELRKL-----IGAPAYIE  157 (197)
Q Consensus        84 v~d~~~~~s~~~~~~~~~~~i~~~-~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~  157 (197)
                      |||++++.+++.+...|...+... .++.|+++|+||+|+.+.            +..+++..+...     .+. .+++
T Consensus        83 v~D~t~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~------------~~~~~i~~~~~~~~~~~~~~-~~~~  149 (168)
T cd04149          83 VVDSADRDRIDEARQELHRIINDREMRDALLLVFANKQDLPDA------------MKPHEIQEKLGLTRIRDRNW-YVQP  149 (168)
T ss_pred             EEeCCchhhHHHHHHHHHHHhcCHhhcCCcEEEEEECcCCccC------------CCHHHHHHHcCCCccCCCcE-EEEE
Confidence            999999999998854455555443 268999999999998642            234444444321     122 6899


Q ss_pred             eccCCCCCHHHHHHHHHH
Q 036449          158 CSSKTQQNVKAVFDAAIR  175 (197)
Q Consensus       158 ~sa~~~~~i~~l~~~i~~  175 (197)
                      +||++|.|++++|++|.+
T Consensus       150 ~SAk~g~gv~~~~~~l~~  167 (168)
T cd04149         150 SCATSGDGLYEGLTWLSS  167 (168)
T ss_pred             eeCCCCCChHHHHHHHhc
Confidence            999999999999999865

Arf6 (ADP ribosylation factor 6) proteins localize to the plasma membrane, where they perform a wide variety of functions. In its active, GTP-bound form, Arf6 is involved in cell spreading, Rac-induced formation of plasma membrane ruffles, cell migration, wound healing, and Fc-mediated phagocytosis. Arf6 appears to change the actin structure at the plasma membrane by activating Rac, a Rho family protein involved in membrane ruffling. Arf6 is required for and enhances Rac formation of ruffles. Arf6 can regulate dendritic branching in hippocampal neurons, and in yeast it localizes to the growing bud, where it plays a role in polarized growth and bud site selection. In leukocytes, Arf6 is required for chemokine-stimulated migration across endothelial cells. Arf6 also plays a role in down-regulation of beta2-adrenergic receptors and luteinizing hormone receptors by facilitating the release of sequestered arrestin to allow endocytosis. Arf6 is believed t

>cd00876 Ras Ras family

Probab=100.00  E-value=3.7e-31  Score=181.29  Aligned_cols=158  Identities=37%  Similarity=0.680  Sum_probs=136.8

Q ss_pred             EEEEEcCCCCCHHHHHHHHhhCCCCCCCCCceeeeeeEEEEECCeEEEEEEEeCCCccccccccccCcCCCcEEEEEEeC
Q 036449            8 KCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSL   87 (197)
Q Consensus         8 ~i~v~G~~~~GKstli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~   87 (197)
                      ||+++|++|||||||++++....+...+.++....+......++..+.+++||+||++.+...+..+++.+|++++|||+
T Consensus         1 ki~i~G~~~~GKTsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d~   80 (160)
T cd00876           1 KVVVLGAGGVGKSAITIQFVKGTFVEEYDPTIEDSYRKTIVVDGETYTLDILDTAGQEEFSAMRDLYIRQGDGFILVYSI   80 (160)
T ss_pred             CEEEECCCCCCHHHHHHHHHhCCCCcCcCCChhHeEEEEEEECCEEEEEEEEECCChHHHHHHHHHHHhcCCEEEEEEEC
Confidence            68999999999999999999988888888888766666677777778999999999999888888899999999999999


Q ss_pred             CCchhHHHHHHHHHHHHhhhC--CCCCEEEEeeCCcccCCcccccCCCCCCcccHHHHHHHHHHhCCCceEEeccCCCCC
Q 036449           88 ISKASYENVSKKWIPELKHYA--PGVPIILVGTKLDLRDDKQFFIDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQQN  165 (197)
Q Consensus        88 ~~~~s~~~~~~~~~~~i~~~~--~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~  165 (197)
                      ++++++..+ ..|...+....  ++.|+++|+||+|+.....          .+.+++..++..++. +++++||+++.|
T Consensus        81 ~~~~s~~~~-~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~----------~~~~~~~~~~~~~~~-~~~~~S~~~~~~  148 (160)
T cd00876          81 TDRESFEEI-KGYREQILRVKDDEDIPIVLVGNKCDLENERQ----------VSKEEGKALAKEWGC-PFIETSAKDNIN  148 (160)
T ss_pred             CCHHHHHHH-HHHHHHHHHhcCCCCCcEEEEEECCcccccce----------ecHHHHHHHHHHcCC-cEEEeccCCCCC
Confidence            999999988 56666665554  4899999999999976443          567788888888886 899999999999


Q ss_pred             HHHHHHHHHHHH
Q 036449          166 VKAVFDAAIRVV  177 (197)
Q Consensus       166 i~~l~~~i~~~~  177 (197)
                      ++++|++|.+.+
T Consensus       149 i~~l~~~l~~~i  160 (160)
T cd00876         149 IDEVFKLLVREI  160 (160)
T ss_pred             HHHHHHHHHhhC
Confidence            999999998753

The Ras family of the Ras superfamily includes classical N-Ras, H-Ras, and K-Ras, as well as R-Ras, Rap, Ral, Rheb, Rhes, ARHI, RERG, Rin/Rit, RSR1, RRP22, Ras2, Ras-dva, and RGK proteins. Ras proteins regulate cell growth, proliferation and differentiation. Ras is activated by guanine nucleotide exchange factors (GEFs) that release GDP and allow GTP binding. Many RasGEFs have been identified. These are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active GTP-bound Ras interacts with several effector proteins: among the best characterized are the Raf kinases, phosphatidylinositol 3-kinase (PI3K), RalGEFs and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of m

>KOG0097 consensus GTPase Rab14, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.98  E-value=7.8e-32  Score=172.34  Aligned_cols=165  Identities=30%  Similarity=0.590  Sum_probs=150.8

Q ss_pred             CceeEEEEEcCCCCCHHHHHHHHhhCCCCCCCCCceeeee-eEEEEECCeEEEEEEEeCCCccccccccccCcCCCcEEE
Q 036449            4 SRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNF-SANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFI   82 (197)
Q Consensus         4 ~~~~~i~v~G~~~~GKstli~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i   82 (197)
                      +..++..++|.-|+|||+|+..|...+|-.+.+.|++..+ ...+.+.+..+.+++||+.|+++|+.....+++.+.+.+
T Consensus         9 syifkyiiigdmgvgkscllhqftekkfmadcphtigvefgtriievsgqkiklqiwdtagqerfravtrsyyrgaagal   88 (215)
T KOG0097|consen    9 SYIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQERFRAVTRSYYRGAAGAL   88 (215)
T ss_pred             hheEEEEEEccccccHHHHHHHHHHHHHhhcCCcccceecceeEEEecCcEEEEEEeecccHHHHHHHHHHHhcccccee
Confidence            4678999999999999999999999999998888887666 567888999999999999999999999999999999999


Q ss_pred             EEEeCCCchhHHHHHHHHHHHHhhhC-CCCCEEEEeeCCcccCCcccccCCCCCCcccHHHHHHHHHHhCCCceEEeccC
Q 036449           83 LAFSLISKASYENVSKKWIPELKHYA-PGVPIILVGTKLDLRDDKQFFIDHPGAVPISTAQGEELRKLIGAPAYIECSSK  161 (197)
Q Consensus        83 ~v~d~~~~~s~~~~~~~~~~~i~~~~-~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~  161 (197)
                      +|||++.+.++..+ ..|+..-+... |+..+++++||.|+...++          +..+++.+|+.+.|. .|+++||+
T Consensus        89 mvyditrrstynhl-sswl~dar~ltnpnt~i~lignkadle~qrd----------v~yeeak~faeengl-~fle~sak  156 (215)
T KOG0097|consen   89 MVYDITRRSTYNHL-SSWLTDARNLTNPNTVIFLIGNKADLESQRD----------VTYEEAKEFAEENGL-MFLEASAK  156 (215)
T ss_pred             EEEEehhhhhhhhH-HHHHhhhhccCCCceEEEEecchhhhhhccc----------CcHHHHHHHHhhcCe-EEEEeccc
Confidence            99999999999999 78887776655 8999999999999988776          899999999999998 89999999


Q ss_pred             CCCCHHHHHHHHHHHHcCC
Q 036449          162 TQQNVKAVFDAAIRVVLQP  180 (197)
Q Consensus       162 ~~~~i~~l~~~i~~~~~~~  180 (197)
                      +|.|+++.|-.-.++++++
T Consensus       157 tg~nvedafle~akkiyqn  175 (215)
T KOG0097|consen  157 TGQNVEDAFLETAKKIYQN  175 (215)
T ss_pred             ccCcHHHHHHHHHHHHHHh
Confidence            9999999998888877765

>cd04147 Ras_dva Ras-dva subfamily

Probab=99.98  E-value=7.7e-31  Score=185.80  Aligned_cols=162  Identities=27%  Similarity=0.443  Sum_probs=133.3

Q ss_pred             EEEEEcCCCCCHHHHHHHHhhCCCCCCCCCceeeeeeEEEEECCeEEEEEEEeCCCccccccccccCcCCCcEEEEEEeC
Q 036449            8 KCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSL   87 (197)
Q Consensus         8 ~i~v~G~~~~GKstli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~   87 (197)
                      ||+++|.+|||||||++++..+.+...+.++........+.+.+..+.+++||+||+..|..++..++..+|++|+|||+
T Consensus         1 kv~vvG~~~vGKTsll~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~ad~vilv~d~   80 (198)
T cd04147           1 RLVFMGAAGVGKTALIQRFLYDTFEPKYRRTVEEMHRKEYEVGGVSLTLDILDTSGSYSFPAMRKLSIQNSDAFALVYAV   80 (198)
T ss_pred             CEEEECCCCCCHHHHHHHHHhCCCCccCCCchhhheeEEEEECCEEEEEEEEECCCchhhhHHHHHHhhcCCEEEEEEEC
Confidence            68999999999999999999999888877887666666677788788999999999999988888899999999999999


Q ss_pred             CCchhHHHHHHHHHHHHhhhC--CCCCEEEEeeCCcccCCcccccCCCCCCcccHHHHHHHHH-HhCCCceEEeccCCCC
Q 036449           88 ISKASYENVSKKWIPELKHYA--PGVPIILVGTKLDLRDDKQFFIDHPGAVPISTAQGEELRK-LIGAPAYIECSSKTQQ  164 (197)
Q Consensus        88 ~~~~s~~~~~~~~~~~i~~~~--~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~sa~~~~  164 (197)
                      +++.+++.+ ..|+..+....  .+.|+++|+||+|+.+...         .+..++..+... ..+. +++++||++|.
T Consensus        81 ~~~~s~~~~-~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~---------~v~~~~~~~~~~~~~~~-~~~~~Sa~~g~  149 (198)
T cd04147          81 DDPESFEEV-ERLREEILEVKEDKFVPIVVVGNKADSLEEER---------QVPAKDALSTVELDWNC-GFVETSAKDNE  149 (198)
T ss_pred             CCHHHHHHH-HHHHHHHHHhcCCCCCcEEEEEEccccccccc---------cccHHHHHHHHHhhcCC-cEEEecCCCCC
Confidence            999999998 67777666654  4799999999999965211         133444444333 3444 79999999999


Q ss_pred             CHHHHHHHHHHHHcCC
Q 036449          165 NVKAVFDAAIRVVLQP  180 (197)
Q Consensus       165 ~i~~l~~~i~~~~~~~  180 (197)
                      |++++|+++++.+...
T Consensus       150 gv~~l~~~l~~~~~~~  165 (198)
T cd04147         150 NVLEVFKELLRQANLP  165 (198)
T ss_pred             CHHHHHHHHHHHhhcc
Confidence            9999999999987643

Ras-dva (Ras - dorsal-ventral anterior localization) subfamily consists of a set of proteins characterized only in Xenopus leavis, to date. In Xenopus Ras-dva expression is activated by the transcription factor Otx2 and begins during gastrulation throughout the anterior ectoderm. Ras-dva expression is inhibited in the anterior neural plate by factor Xanf1. Downregulation of Ras-dva results in head development abnormalities through the inhibition of several regulators of the anterior neural plate and folds patterning, including Otx2, BF-1, Xag2, Pax6, Slug, and Sox9. Downregulation of Ras-dva also interferes with the FGF-8a signaling within the anterior ectoderm. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.

>KOG0083 consensus GTPase Rab26/Rab37, small G protein superfamily [General function prediction only]

Probab=99.98  E-value=3.6e-33  Score=176.56  Aligned_cols=160  Identities=33%  Similarity=0.633  Sum_probs=142.2

Q ss_pred             EEEcCCCCCHHHHHHHHhhCCCC-CCCCCceeeee-eEEEEECCeEEEEEEEeCCCccccccccccCcCCCcEEEEEEeC
Q 036449           10 VTVGDGAVGKTCLLISYTSNTFP-TDYVPTVFDNF-SANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSL   87 (197)
Q Consensus        10 ~v~G~~~~GKstli~~~~~~~~~-~~~~~~~~~~~-~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~   87 (197)
                      +++|.+++|||+|+-++..+.|- .+..+|.+..+ ...+..++..+.+++|||.||++|++....+++.+|+.+++||+
T Consensus         1 mllgds~~gktcllir~kdgafl~~~fistvgid~rnkli~~~~~kvklqiwdtagqerfrsvt~ayyrda~allllydi   80 (192)
T KOG0083|consen    1 MLLGDSCTGKTCLLIRFKDGAFLAGNFISTVGIDFRNKLIDMDDKKVKLQIWDTAGQERFRSVTHAYYRDADALLLLYDI   80 (192)
T ss_pred             CccccCccCceEEEEEeccCceecCceeeeeeeccccceeccCCcEEEEEEeeccchHHHhhhhHhhhcccceeeeeeec
Confidence            47899999999999988888774 44556666555 45577789999999999999999999999999999999999999


Q ss_pred             CCchhHHHHHHHHHHHHhhhC-CCCCEEEEeeCCcccCCcccccCCCCCCcccHHHHHHHHHHhCCCceEEeccCCCCCH
Q 036449           88 ISKASYENVSKKWIPELKHYA-PGVPIILVGTKLDLRDDKQFFIDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQQNV  166 (197)
Q Consensus        88 ~~~~s~~~~~~~~~~~i~~~~-~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i  166 (197)
                      .+..||+.. +.|+..|.... ....+++++||+|+.+++.          +..+++.++++.|+. ||+++||++|-|+
T Consensus        81 ankasfdn~-~~wlsei~ey~k~~v~l~llgnk~d~a~er~----------v~~ddg~kla~~y~i-pfmetsaktg~nv  148 (192)
T KOG0083|consen   81 ANKASFDNC-QAWLSEIHEYAKEAVALMLLGNKCDLAHERA----------VKRDDGEKLAEAYGI-PFMETSAKTGFNV  148 (192)
T ss_pred             ccchhHHHH-HHHHHHHHHHHHhhHhHhhhccccccchhhc----------cccchHHHHHHHHCC-CceeccccccccH
Confidence            999999999 89999999887 5788999999999988765          778999999999999 9999999999999


Q ss_pred             HHHHHHHHHHHcCCC
Q 036449          167 KAVFDAAIRVVLQPP  181 (197)
Q Consensus       167 ~~l~~~i~~~~~~~~  181 (197)
                      +..|-.|.+.+.+..
T Consensus       149 d~af~~ia~~l~k~~  163 (192)
T KOG0083|consen  149 DLAFLAIAEELKKLK  163 (192)
T ss_pred             hHHHHHHHHHHHHhc
Confidence            999999998877653

>cd00154 Rab Rab family

Probab=99.98  E-value=1.2e-30  Score=178.28  Aligned_cols=157  Identities=41%  Similarity=0.757  Sum_probs=135.0

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhhCCCCCCCCCceeeee-eEEEEECCeEEEEEEEeCCCccccccccccCcCCCcEEEEEE
Q 036449            7 IKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNF-SANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAF   85 (197)
Q Consensus         7 ~~i~v~G~~~~GKstli~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~   85 (197)
                      +||+++|++|+|||||++++.+..+...+.++.+..+ ......++..+.+.+||+||++.+...+..+++++|++++|+
T Consensus         1 ~~i~~~G~~~~GKStl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~ii~v~   80 (159)
T cd00154           1 FKIVLIGDSGVGKTSLLLRFVDGKFDENYKSTIGVDFKSKTIEIDGKTVKLQIWDTAGQERFRSITPSYYRGAHGAILVY   80 (159)
T ss_pred             CeEEEECCCCCCHHHHHHHHHhCcCCCccCCceeeeeEEEEEEECCEEEEEEEEecCChHHHHHHHHHHhcCCCEEEEEE
Confidence            5899999999999999999999998887677765433 455666677789999999999999999999999999999999


Q ss_pred             eCCCchhHHHHHHHHHHHHhhhC-CCCCEEEEeeCCcccCCcccccCCCCCCcccHHHHHHHHHHhCCCceEEeccCCCC
Q 036449           86 SLISKASYENVSKKWIPELKHYA-PGVPIILVGTKLDLRDDKQFFIDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQQ  164 (197)
Q Consensus        86 d~~~~~s~~~~~~~~~~~i~~~~-~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~  164 (197)
                      |++++++++.+ ..|+..+.... ++.|+++++||+|+.....          ...++...++...+. +++++||+++.
T Consensus        81 d~~~~~~~~~~-~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~----------~~~~~~~~~~~~~~~-~~~~~sa~~~~  148 (159)
T cd00154          81 DITNRESFENL-DKWLKELKEYAPENIPIILVGNKIDLEDQRQ----------VSTEEAQQFAKENGL-LFFETSAKTGE  148 (159)
T ss_pred             ECCCHHHHHHH-HHHHHHHHHhCCCCCcEEEEEEccccccccc----------ccHHHHHHHHHHcCC-eEEEEecCCCC
Confidence            99999999998 67988888876 6899999999999963322          456777888888777 89999999999


Q ss_pred             CHHHHHHHHHH
Q 036449          165 NVKAVFDAAIR  175 (197)
Q Consensus       165 ~i~~l~~~i~~  175 (197)
                      |++++|++|.+
T Consensus       149 ~i~~~~~~i~~  159 (159)
T cd00154         149 NVEELFQSLAE  159 (159)
T ss_pred             CHHHHHHHHhC
Confidence            99999999863

Rab GTPases form the largest family within the Ras superfamily. There are at least 60 Rab genes in the human genome, and a number of Rab GTPases are conserved from yeast to humans. Rab GTPases are small, monomeric proteins that function as molecular switches to regulate vesicle trafficking pathways. The different Rab GTPases are localized to the cytosolic face of specific intracellular membranes, where they regulate distinct steps in membrane traffic pathways. In the GTP-bound form, Rab GTPases recruit specific sets of effector proteins onto membranes. Through their effectors, Rab GTPases regulate vesicle formation, actin- and tubulin-dependent vesicle movement, and membrane fusion. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide di

>cd04158 ARD1 ARD1 subfamily

Probab=99.98  E-value=7.8e-31  Score=181.44  Aligned_cols=157  Identities=17%  Similarity=0.266  Sum_probs=122.4

Q ss_pred             EEEEEcCCCCCHHHHHHHHhhCCCCCCCCCceeeeeeEEEEECCeEEEEEEEeCCCccccccccccCcCCCcEEEEEEeC
Q 036449            8 KCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSL   87 (197)
Q Consensus         8 ~i~v~G~~~~GKstli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~   87 (197)
                      ||+++|.+|||||||++++....+.. +.+|.+..+. ....  ..+.+++||+||++.+...+..++.++|++++|+|+
T Consensus         1 ~vvlvG~~~~GKTsl~~~l~~~~~~~-~~~T~~~~~~-~~~~--~~~~i~l~Dt~G~~~~~~~~~~~~~~ad~ii~V~D~   76 (169)
T cd04158           1 RVVTLGLDGAGKTTILFKLKQDEFMQ-PIPTIGFNVE-TVEY--KNLKFTIWDVGGKHKLRPLWKHYYLNTQAVVFVVDS   76 (169)
T ss_pred             CEEEECCCCCCHHHHHHHHhcCCCCC-cCCcCceeEE-EEEE--CCEEEEEEECCCChhcchHHHHHhccCCEEEEEEeC
Confidence            68999999999999999999887654 5666654432 2333  347889999999999999999999999999999999


Q ss_pred             CCchhHHHHHHHHHHHHhh-hC-CCCCEEEEeeCCcccCCcccccCCCCCCcccHHHHHHHHHHhC-----CCceEEecc
Q 036449           88 ISKASYENVSKKWIPELKH-YA-PGVPIILVGTKLDLRDDKQFFIDHPGAVPISTAQGEELRKLIG-----APAYIECSS  160 (197)
Q Consensus        88 ~~~~s~~~~~~~~~~~i~~-~~-~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~sa  160 (197)
                      +++++++.+ ..|+..+.. .. .+.|+++|+||+|+...            ++.++++.++...+     ...++++||
T Consensus        77 s~~~s~~~~-~~~~~~~~~~~~~~~~piilv~NK~Dl~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~Sa  143 (169)
T cd04158          77 SHRDRVSEA-HSELAKLLTEKELRDALLLIFANKQDVAGA------------LSVEEMTELLSLHKLCCGRSWYIQGCDA  143 (169)
T ss_pred             CcHHHHHHH-HHHHHHHhcChhhCCCCEEEEEeCcCcccC------------CCHHHHHHHhCCccccCCCcEEEEeCcC
Confidence            999999998 555555543 22 56899999999999642            34555555553222     115789999


Q ss_pred             CCCCCHHHHHHHHHHHHcCCC
Q 036449          161 KTQQNVKAVFDAAIRVVLQPP  181 (197)
Q Consensus       161 ~~~~~i~~l~~~i~~~~~~~~  181 (197)
                      ++|.|++++|++|.+.+....
T Consensus       144 ~~g~gv~~~f~~l~~~~~~~~  164 (169)
T cd04158         144 RSGMGLYEGLDWLSRQLVAAG  164 (169)
T ss_pred             CCCCCHHHHHHHHHHHHhhcc
Confidence            999999999999998876654

ARD1 (ADP-ribosylation factor domain protein 1) is an unusual member of the Arf family. In addition to the C-terminal Arf domain, ARD1 has an additional 46-kDa N-terminal domain that contains a RING finger domain, two predicted B-Boxes, and a coiled-coil protein interaction motif. This domain belongs to the TRIM (tripartite motif) or RBCC (RING, B-Box, coiled-coil) family. Like most Arfs, the ARD1 Arf domain lacks detectable GTPase activity. However, unlike most Arfs, the full-length ARD1 protein has significant GTPase activity due to the GAP (GTPase-activating protein) activity exhibited by the 46-kDa N-terminal domain. The GAP domain of ARD1 is specific for its own Arf domain and does not bind other Arfs. The rate of GDP dissociation from the ARD1 Arf domain is slowed by the adjacent 15 amino acids, which act as a GDI (GDP-dissociation inhibitor) domain. ARD1 is ubiquitously expressed in cells and localizes to the Golgi and to the lysosomal membra

>cd04152 Arl4_Arl7 Arl4/Arl7 subfamily

Probab=99.98  E-value=5.5e-31  Score=184.33  Aligned_cols=170  Identities=21%  Similarity=0.325  Sum_probs=127.1

Q ss_pred             ceeEEEEEcCCCCCHHHHHHHHhhCCCCCCCCCceeeee-eEEEEE-CCeEEEEEEEeCCCccccccccccCcCCCcEEE
Q 036449            5 RFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNF-SANVVV-NGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFI   82 (197)
Q Consensus         5 ~~~~i~v~G~~~~GKstli~~~~~~~~~~~~~~~~~~~~-~~~~~~-~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i   82 (197)
                      ..++|+++|.+|||||||++++..+.+... .+|.+... ...+.. ++..+.+.+||+||++.+..++..++.++|+++
T Consensus         2 ~~~kv~~vG~~~~GKTsli~~~~~~~~~~~-~~t~~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii   80 (183)
T cd04152           2 QSLHIVMLGLDSAGKTTVLYRLKFNEFVNT-VPTKGFNTEKIKVSLGNSKGITFHFWDVGGQEKLRPLWKSYTRCTDGIV   80 (183)
T ss_pred             CceEEEEECCCCCCHHHHHHHHhcCCcCCc-CCccccceeEEEeeccCCCceEEEEEECCCcHhHHHHHHHHhccCCEEE
Confidence            368999999999999999999998887654 45554222 223333 345688999999999999999999999999999


Q ss_pred             EEEeCCCchhHHHHHHHHHHHHhhhC--CCCCEEEEeeCCcccCCcccccCCCCCCcccHHHHHHHHH--HhC---CCce
Q 036449           83 LAFSLISKASYENVSKKWIPELKHYA--PGVPIILVGTKLDLRDDKQFFIDHPGAVPISTAQGEELRK--LIG---APAY  155 (197)
Q Consensus        83 ~v~d~~~~~s~~~~~~~~~~~i~~~~--~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~---~~~~  155 (197)
                      +|+|++++.+++.+ ..|+..+....  .+.|+++|+||+|+...            ...++...+..  ...   ..++
T Consensus        81 ~v~D~~~~~~~~~~-~~~~~~i~~~~~~~~~p~iiv~NK~D~~~~------------~~~~~~~~~~~~~~~~~~~~~~~  147 (183)
T cd04152          81 FVVDSVDVERMEEA-KTELHKITRFSENQGVPVLVLANKQDLPNA------------LSVSEVEKLLALHELSASTPWHV  147 (183)
T ss_pred             EEEECCCHHHHHHH-HHHHHHHHhhhhcCCCcEEEEEECcCcccc------------CCHHHHHHHhCccccCCCCceEE
Confidence            99999999998887 56666555432  47999999999998642            22333333322  111   1257


Q ss_pred             EEeccCCCCCHHHHHHHHHHHHcCCCchhhhhh
Q 036449          156 IECSSKTQQNVKAVFDAAIRVVLQPPKTKKKKN  188 (197)
Q Consensus       156 ~~~sa~~~~~i~~l~~~i~~~~~~~~~~~~~~~  188 (197)
                      +++||+++.|++++|++|.+.+.+.++-.+.++
T Consensus       148 ~~~SA~~~~gi~~l~~~l~~~l~~~~~~~~~~~  180 (183)
T cd04152         148 QPACAIIGEGLQEGLEKLYEMILKRRKMLRQQK  180 (183)
T ss_pred             EEeecccCCCHHHHHHHHHHHHHHHHhhhhhhh
Confidence            899999999999999999999876655444333

Arl4 (Arf-like 4) is highly expressed in testicular germ cells, and is found in the nucleus and nucleolus. In mice, Arl4 is developmentally expressed during embryogenesis, and a role in somite formation and central nervous system differentiation has been proposed. Arl7 has been identified as the only Arf/Arl protein to be induced by agonists of liver X-receptor and retinoid X-receptor and by cholesterol loading in human macrophages. Arl7 is proposed to play a role in transport between a perinuclear compartment and the plasma membrane, apparently linked to the ABCA1-mediated cholesterol secretion pathway. Older literature suggests that Arl6 is a part of the Arl4/Arl7 subfamily, but analyses based on more recent sequence data place Arl6 in its own subfamily.

>cd04162 Arl9_Arfrp2_like Arl9/Arfrp2-like subfamily

Probab=99.97  E-value=9.6e-32  Score=185.01  Aligned_cols=153  Identities=18%  Similarity=0.234  Sum_probs=123.8

Q ss_pred             EEEEEcCCCCCHHHHHHHHhhCCCCCCCCCceeeeeeEEEEECCeEEEEEEEeCCCccccccccccCcCCCcEEEEEEeC
Q 036449            8 KCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSL   87 (197)
Q Consensus         8 ~i~v~G~~~~GKstli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~   87 (197)
                      .|+++|.+|||||||++++..+.+...+.||.+...   ..++...+.+.+||+||++.+..++..+++++|++|+|||.
T Consensus         1 ~i~ivG~~~vGKTsli~~~~~~~~~~~~~pt~g~~~---~~i~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~ii~V~D~   77 (164)
T cd04162           1 QILVLGLDGAGKTSLLHSLSSERSLESVVPTTGFNS---VAIPTQDAIMELLEIGGSQNLRKYWKRYLSGSQGLIFVVDS   77 (164)
T ss_pred             CEEEECCCCCCHHHHHHHHhcCCCcccccccCCcce---EEEeeCCeEEEEEECCCCcchhHHHHHHHhhCCEEEEEEEC
Confidence            389999999999999999999888888888875432   23444568899999999999999999999999999999999


Q ss_pred             CCchhHHHHHHHHHHHHhhhCCCCCEEEEeeCCcccCCcccccCCCCCCccc----HHHHHHHHHHhCCCceEEeccCC-
Q 036449           88 ISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPIS----TAQGEELRKLIGAPAYIECSSKT-  162 (197)
Q Consensus        88 ~~~~s~~~~~~~~~~~i~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~sa~~-  162 (197)
                      +++.++..+ ..|+..+....+++|+++|+||+|+.....          +.    ...+..++++.+. .++++||++ 
T Consensus        78 t~~~s~~~~-~~~l~~~~~~~~~~piilv~NK~Dl~~~~~----------~~~i~~~~~~~~~~~~~~~-~~~~~Sa~~~  145 (164)
T cd04162          78 ADSERLPLA-RQELHQLLQHPPDLPLVVLANKQDLPAARS----------VQEIHKELELEPIARGRRW-ILQGTSLDDD  145 (164)
T ss_pred             CCHHHHHHH-HHHHHHHHhCCCCCcEEEEEeCcCCcCCCC----------HHHHHHHhCChhhcCCCce-EEEEeeecCC
Confidence            999999888 566666654447899999999999965432          21    1234556666666 789998888 


Q ss_pred             -----CCCHHHHHHHHHH
Q 036449          163 -----QQNVKAVFDAAIR  175 (197)
Q Consensus       163 -----~~~i~~l~~~i~~  175 (197)
                           ++|++++|+.++.
T Consensus       146 ~s~~~~~~v~~~~~~~~~  163 (164)
T cd04162         146 GSPSRMEAVKDLLSQLIN  163 (164)
T ss_pred             CChhHHHHHHHHHHHHhc
Confidence                 9999999998874

Arl9 (Arf-like 9) was first identified as part of the Human Cancer Genome Project. It maps to chromosome 4q12 and is sometimes referred to as Arfrp2 (Arf-related protein 2). This is a novel subfamily identified in human cancers that is uncharacterized to date.

>smart00177 ARF ARF-like small GTPases; ARF, ADP-ribosylation factor

Probab=99.97  E-value=1.2e-30  Score=181.32  Aligned_cols=158  Identities=16%  Similarity=0.181  Sum_probs=118.9

Q ss_pred             CceeEEEEEcCCCCCHHHHHHHHhhCCCCCCCCCceeeeeeEEEEECCeEEEEEEEeCCCccccccccccCcCCCcEEEE
Q 036449            4 SRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFIL   83 (197)
Q Consensus         4 ~~~~~i~v~G~~~~GKstli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~   83 (197)
                      .+.+||+++|.+|||||||++++..+.+. .+.||.+..+. ....  ..+.+++||+||++.+..++..++.++|++|+
T Consensus        11 ~~~~ki~l~G~~~~GKTsL~~~~~~~~~~-~~~~t~~~~~~-~~~~--~~~~l~l~D~~G~~~~~~~~~~~~~~ad~ii~   86 (175)
T smart00177       11 NKEMRILMVGLDAAGKTTILYKLKLGESV-TTIPTIGFNVE-TVTY--KNISFTVWDVGGQDKIRPLWRHYYTNTQGLIF   86 (175)
T ss_pred             CCccEEEEEcCCCCCHHHHHHHHhcCCCC-CcCCccccceE-EEEE--CCEEEEEEECCCChhhHHHHHHHhCCCCEEEE
Confidence            45699999999999999999999877774 35677654432 2233  34789999999999999999999999999999


Q ss_pred             EEeCCCchhHHHHHHHHHHHHhhh-CCCCCEEEEeeCCcccCCcccccCCCCCCcccHHHHHHHH-----HHhCCCceEE
Q 036449           84 AFSLISKASYENVSKKWIPELKHY-APGVPIILVGTKLDLRDDKQFFIDHPGAVPISTAQGEELR-----KLIGAPAYIE  157 (197)
Q Consensus        84 v~d~~~~~s~~~~~~~~~~~i~~~-~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~  157 (197)
                      |||++++++++.+...|...+... .++.|++||+||+|+.+..            ..++.....     ..... .+++
T Consensus        87 v~D~t~~~s~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~~~~------------~~~~i~~~~~~~~~~~~~~-~~~~  153 (175)
T smart00177       87 VVDSNDRDRIDEAREELHRMLNEDELRDAVILVFANKQDLPDAM------------KAAEITEKLGLHSIRDRNW-YIQP  153 (175)
T ss_pred             EEECCCHHHHHHHHHHHHHHhhCHhhcCCcEEEEEeCcCcccCC------------CHHHHHHHhCccccCCCcE-EEEE
Confidence            999999999998844444444433 2679999999999996432            112211111     11122 4678


Q ss_pred             eccCCCCCHHHHHHHHHHHHc
Q 036449          158 CSSKTQQNVKAVFDAAIRVVL  178 (197)
Q Consensus       158 ~sa~~~~~i~~l~~~i~~~~~  178 (197)
                      +||++|.|++++|++|.+.+.
T Consensus       154 ~Sa~~g~gv~e~~~~l~~~~~  174 (175)
T smart00177      154 TCATSGDGLYEGLTWLSNNLK  174 (175)
T ss_pred             eeCCCCCCHHHHHHHHHHHhc
Confidence            999999999999999987753

Ras homologues involved in vesicular transport. Activator of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. ARFs are N-terminally myristoylated. Contains ATP/GTP-binding motif (P-loop).

>PTZ00133 ADP-ribosylation factor; Provisional

Probab=99.97  E-value=2.2e-31  Score=186.04  Aligned_cols=160  Identities=19%  Similarity=0.239  Sum_probs=120.9

Q ss_pred             CceeEEEEEcCCCCCHHHHHHHHhhCCCCCCCCCceeeeeeEEEEECCeEEEEEEEeCCCccccccccccCcCCCcEEEE
Q 036449            4 SRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFIL   83 (197)
Q Consensus         4 ~~~~~i~v~G~~~~GKstli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~   83 (197)
                      ++.+||+++|++|||||||++++..+.+.. +.||.+..+. ....  ..+.+++||+||++.+..++..++.++|++|+
T Consensus        15 ~~~~kv~lvG~~~vGKTsli~~~~~~~~~~-~~~T~~~~~~-~~~~--~~~~~~l~D~~G~~~~~~~~~~~~~~ad~iI~   90 (182)
T PTZ00133         15 KKEVRILMVGLDAAGKTTILYKLKLGEVVT-TIPTIGFNVE-TVEY--KNLKFTMWDVGGQDKLRPLWRHYYQNTNGLIF   90 (182)
T ss_pred             CCccEEEEEcCCCCCHHHHHHHHhcCCccc-cCCccccceE-EEEE--CCEEEEEEECCCCHhHHHHHHHHhcCCCEEEE
Confidence            456999999999999999999998877764 5666654433 2333  34789999999999999999999999999999


Q ss_pred             EEeCCCchhHHHHHHHHHHHHhhhC-CCCCEEEEeeCCcccCCcccccCCCCCCcccHHHHHHHH-----HHhCCCceEE
Q 036449           84 AFSLISKASYENVSKKWIPELKHYA-PGVPIILVGTKLDLRDDKQFFIDHPGAVPISTAQGEELR-----KLIGAPAYIE  157 (197)
Q Consensus        84 v~d~~~~~s~~~~~~~~~~~i~~~~-~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~  157 (197)
                      |||+++++++......+...+.... ++.|+++|+||.|+.+..            ..++.....     ..... .+++
T Consensus        91 v~D~t~~~s~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~~~~------------~~~~i~~~l~~~~~~~~~~-~~~~  157 (182)
T PTZ00133         91 VVDSNDRERIGDAREELERMLSEDELRDAVLLVFANKQDLPNAM------------STTEVTEKLGLHSVRQRNW-YIQG  157 (182)
T ss_pred             EEeCCCHHHHHHHHHHHHHHHhCHhhcCCCEEEEEeCCCCCCCC------------CHHHHHHHhCCCcccCCcE-EEEe
Confidence            9999999999988444444444322 578999999999986432            112211111     11111 4668


Q ss_pred             eccCCCCCHHHHHHHHHHHHcCC
Q 036449          158 CSSKTQQNVKAVFDAAIRVVLQP  180 (197)
Q Consensus       158 ~sa~~~~~i~~l~~~i~~~~~~~  180 (197)
                      +||++|.|++++|++|.+.+.+.
T Consensus       158 ~Sa~tg~gv~e~~~~l~~~i~~~  180 (182)
T PTZ00133        158 CCATTAQGLYEGLDWLSANIKKS  180 (182)
T ss_pred             eeCCCCCCHHHHHHHHHHHHHHh
Confidence            99999999999999999887654

>cd04150 Arf1_5_like Arf1-Arf5-like subfamily

Probab=99.97  E-value=1.1e-30  Score=178.82  Aligned_cols=153  Identities=16%  Similarity=0.206  Sum_probs=115.0

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhhCCCCCCCCCceeeeeeEEEEECCeEEEEEEEeCCCccccccccccCcCCCcEEEEEEe
Q 036449            7 IKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFS   86 (197)
Q Consensus         7 ~~i~v~G~~~~GKstli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d   86 (197)
                      +||+++|.+|||||||++++..+.+.. +.||.+..+. .+..  ..+.+.+||+||++++...+..++.++|++|+|||
T Consensus         1 ~kv~~~G~~~~GKTsli~~l~~~~~~~-~~pt~g~~~~-~~~~--~~~~~~l~D~~G~~~~~~~~~~~~~~ad~~i~v~D   76 (159)
T cd04150           1 MRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGFNVE-TVEY--KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVD   76 (159)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCCcc-cCCCCCcceE-EEEE--CCEEEEEEECCCCHhHHHHHHHHhcCCCEEEEEEe
Confidence            589999999999999999998887764 5677654332 2333  34788999999999999999999999999999999


Q ss_pred             CCCchhHHHHHHHHHHHHhhhC-CCCCEEEEeeCCcccCCcccccCCCCCCcccHHHHHHHHH----HhCCCceEEeccC
Q 036449           87 LISKASYENVSKKWIPELKHYA-PGVPIILVGTKLDLRDDKQFFIDHPGAVPISTAQGEELRK----LIGAPAYIECSSK  161 (197)
Q Consensus        87 ~~~~~s~~~~~~~~~~~i~~~~-~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~sa~  161 (197)
                      ++++.+++.+...|...+.... .+.|+++++||+|+.....           ..+....+..    ..+. .++++||+
T Consensus        77 ~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~-----------~~~i~~~~~~~~~~~~~~-~~~~~Sak  144 (159)
T cd04150          77 SNDRERIGEAREELQRMLNEDELRDAVLLVFANKQDLPNAMS-----------AAEVTDKLGLHSLRNRNW-YIQATCAT  144 (159)
T ss_pred             CCCHHHHHHHHHHHHHHHhcHHhcCCCEEEEEECCCCCCCCC-----------HHHHHHHhCccccCCCCE-EEEEeeCC
Confidence            9999999988444444444322 5789999999999954211           1121222211    1122 46799999


Q ss_pred             CCCCHHHHHHHHHH
Q 036449          162 TQQNVKAVFDAAIR  175 (197)
Q Consensus       162 ~~~~i~~l~~~i~~  175 (197)
                      +|.|++++|++|.+
T Consensus       145 ~g~gv~~~~~~l~~  158 (159)
T cd04150         145 SGDGLYEGLDWLSN  158 (159)
T ss_pred             CCCCHHHHHHHHhc
Confidence            99999999999864

This subfamily contains Arf1, Arf2, Arf3, Arf4, Arf5, and related proteins. Arfs1-5 are soluble proteins that are crucial for assembling coat proteins during vesicle formation. Each contains an N-terminal myristoylated amphipathic helix that is folded into the protein in the GDP-bound state. GDP/GTP exchange exposes the helix, which anchors to the membrane. Following GTP hydrolysis, the helix dissociates from the membrane and folds back into the protein. A general feature of Arf1-5 signaling may be the cooperation of two Arfs at the same site. Arfs1-5 are generally considered to be interchangeable in function and location, but some specific functions have been assigned. Arf1 localizes to the early/cis-Golgi, where it is activated by GBF1 and recruits the coat protein COPI. It also localizes to the trans-Golgi network (TGN), where it is activated by BIG1/BIG2 and recruits the AP1, AP3, AP4, and GGA proteins. Humans, but not rodents

>PTZ00132 GTP-binding nuclear protein Ran; Provisional

Probab=99.97  E-value=9.6e-30  Score=182.44  Aligned_cols=168  Identities=28%  Similarity=0.493  Sum_probs=140.0

Q ss_pred             CCCCceeEEEEEcCCCCCHHHHHHHHhhCCCCCCCCCceeeee-eEEEEECCeEEEEEEEeCCCccccccccccCcCCCc
Q 036449            1 MSASRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNF-SANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGAD   79 (197)
Q Consensus         1 m~~~~~~~i~v~G~~~~GKstli~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~   79 (197)
                      |.+...+||+++|++|||||||++++..+.+...+.+|.+..+ ...+..++..+.+.+||++|++.+..++..++.+++
T Consensus         4 ~~~~~~~kv~liG~~g~GKTtLi~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~i~~~Dt~g~~~~~~~~~~~~~~~~   83 (215)
T PTZ00132          4 MDEVPEFKLILVGDGGVGKTTFVKRHLTGEFEKKYIPTLGVEVHPLKFYTNCGPICFNVWDTAGQEKFGGLRDGYYIKGQ   83 (215)
T ss_pred             ccCCCCceEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceEEEEEEEEECCeEEEEEEEECCCchhhhhhhHHHhccCC
Confidence            3456779999999999999999999998888888888886544 334445778899999999999999888888899999


Q ss_pred             EEEEEEeCCCchhHHHHHHHHHHHHhhhCCCCCEEEEeeCCcccCCcccccCCCCCCcccHHHHHHHHHHhCCCceEEec
Q 036449           80 VFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPISTAQGEELRKLIGAPAYIECS  159 (197)
Q Consensus        80 ~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s  159 (197)
                      ++++|||++++.++..+ ..|+..+....++.|+++++||+|+.+..           ...+ ...+++..+. .++++|
T Consensus        84 ~~i~v~d~~~~~s~~~~-~~~~~~i~~~~~~~~i~lv~nK~Dl~~~~-----------~~~~-~~~~~~~~~~-~~~e~S  149 (215)
T PTZ00132         84 CAIIMFDVTSRITYKNV-PNWHRDIVRVCENIPIVLVGNKVDVKDRQ-----------VKAR-QITFHRKKNL-QYYDIS  149 (215)
T ss_pred             EEEEEEECcCHHHHHHH-HHHHHHHHHhCCCCCEEEEEECccCcccc-----------CCHH-HHHHHHHcCC-EEEEEe
Confidence            99999999999999998 68888887766789999999999985422           2222 2356666776 899999


Q ss_pred             cCCCCCHHHHHHHHHHHHcCCCc
Q 036449          160 SKTQQNVKAVFDAAIRVVLQPPK  182 (197)
Q Consensus       160 a~~~~~i~~l~~~i~~~~~~~~~  182 (197)
                      |+++.|++++|.+|++.+...+.
T Consensus       150 a~~~~~v~~~f~~ia~~l~~~p~  172 (215)
T PTZ00132        150 AKSNYNFEKPFLWLARRLTNDPN  172 (215)
T ss_pred             CCCCCCHHHHHHHHHHHHhhccc
Confidence            99999999999999998876543

>cd04154 Arl2 Arl2 subfamily

Probab=99.97  E-value=1.2e-29  Score=176.21  Aligned_cols=154  Identities=19%  Similarity=0.253  Sum_probs=117.4

Q ss_pred             CceeEEEEEcCCCCCHHHHHHHHhhCCCCCCCCCceeeeeeEEEEECCeEEEEEEEeCCCccccccccccCcCCCcEEEE
Q 036449            4 SRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFIL   83 (197)
Q Consensus         4 ~~~~~i~v~G~~~~GKstli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~   83 (197)
                      ...++|+++|++|||||||++++....+ ..+.+|.+. ....+.+++  +.+.+||+||++.++.++..++.++|++++
T Consensus        12 ~~~~kv~ivG~~~~GKTsL~~~l~~~~~-~~~~~t~g~-~~~~~~~~~--~~l~l~D~~G~~~~~~~~~~~~~~~d~~i~   87 (173)
T cd04154          12 EREMRILILGLDNAGKTTILKKLLGEDI-DTISPTLGF-QIKTLEYEG--YKLNIWDVGGQKTLRPYWRNYFESTDALIW   87 (173)
T ss_pred             CCccEEEEECCCCCCHHHHHHHHccCCC-CCcCCcccc-ceEEEEECC--EEEEEEECCCCHHHHHHHHHHhCCCCEEEE
Confidence            4568999999999999999999997754 344555542 223344443  778999999999988888889999999999


Q ss_pred             EEeCCCchhHHHHHHHHHHHHhh-h-CCCCCEEEEeeCCcccCCcccccCCCCCCcccHHHHHHHHH-----HhCCCceE
Q 036449           84 AFSLISKASYENVSKKWIPELKH-Y-APGVPIILVGTKLDLRDDKQFFIDHPGAVPISTAQGEELRK-----LIGAPAYI  156 (197)
Q Consensus        84 v~d~~~~~s~~~~~~~~~~~i~~-~-~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~  156 (197)
                      |||++++.++... ..|+..+.. . .++.|+++|+||+|+.+..            ..++...+..     ..+. +++
T Consensus        88 v~d~~~~~s~~~~-~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~------------~~~~~~~~~~~~~~~~~~~-~~~  153 (173)
T cd04154          88 VVDSSDRLRLDDC-KRELKELLQEERLAGATLLILANKQDLPGAL------------SEEEIREALELDKISSHHW-RIQ  153 (173)
T ss_pred             EEECCCHHHHHHH-HHHHHHHHhChhhcCCCEEEEEECcccccCC------------CHHHHHHHhCccccCCCce-EEE
Confidence            9999999999887 455554432 2 2689999999999996532            2333344332     2233 799


Q ss_pred             EeccCCCCCHHHHHHHHHH
Q 036449          157 ECSSKTQQNVKAVFDAAIR  175 (197)
Q Consensus       157 ~~sa~~~~~i~~l~~~i~~  175 (197)
                      ++||++|.|++++|+++++
T Consensus       154 ~~Sa~~g~gi~~l~~~l~~  172 (173)
T cd04154         154 PCSAVTGEGLLQGIDWLVD  172 (173)
T ss_pred             eccCCCCcCHHHHHHHHhc
Confidence            9999999999999999864

Arl2 (Arf-like 2) GTPases are members of the Arf family that bind GDP and GTP with very low affinity. Unlike most Arf family proteins, Arl2 is not myristoylated at its N-terminal helix. The protein PDE-delta, first identified in photoreceptor rod cells, binds specifically to Arl2 and is structurally very similar to RhoGDI. Despite the high structural similarity between Arl2 and Rho proteins and between PDE-delta and RhoGDI, the interactions between the GTPases and their effectors are very different. In its GTP bound form, Arl2 interacts with the protein Binder of Arl2 (BART), and the complex is believed to play a role in mitochondrial adenine nucleotide transport. In its GDP bound form, Arl2 interacts with tubulin- folding Cofactor D; this interaction is believed to play a role in regulation of microtubule dynamics that impact the cytoskeleton, cell division, and cytokinesis.

>cd04102 RabL3 RabL3 (Rab-like3) subfamily

Probab=99.97  E-value=9.6e-29  Score=174.32  Aligned_cols=150  Identities=23%  Similarity=0.313  Sum_probs=120.2

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhhCCCCCCCCCceeeee-eEEEEEC-----CeEEEEEEEeCCCccccccccccCcCCCcE
Q 036449            7 IKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNF-SANVVVN-----GSTVNLGLWDTAGQEDYNRLRPLSYRGADV   80 (197)
Q Consensus         7 ~~i~v~G~~~~GKstli~~~~~~~~~~~~~~~~~~~~-~~~~~~~-----~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~   80 (197)
                      +||+++|.+|||||||++++..+.+...+.+|.+..+ ...+.++     +..+.+++||++|++.|..++..+++++|+
T Consensus         1 vKIvlvGd~gVGKTSLi~~~~~~~f~~~~~~Tig~~~~~k~~~~~~~~~~~~~~~l~IwDtaG~e~~~~l~~~~yr~ad~   80 (202)
T cd04102           1 VRVLVVGDSGVGKSSLVHLICKNQVLGRPSWTVGCSVDVKHHTYKEGTPEEKTFFVELWDVGGSESVKSTRAVFYNQVNG   80 (202)
T ss_pred             CEEEEECCCCCCHHHHHHHHHcCCCCCCCCcceeeeEEEEEEEEcCCCCCCcEEEEEEEecCCchhHHHHHHHHhCcCCE
Confidence            5899999999999999999999999888888886444 3334442     567899999999999999999999999999


Q ss_pred             EEEEEeCCCchhHHHHHHHHHHHHhhh-------------------C-CCCCEEEEeeCCcccCCcccccCCCCCCcccH
Q 036449           81 FILAFSLISKASYENVSKKWIPELKHY-------------------A-PGVPIILVGTKLDLRDDKQFFIDHPGAVPIST  140 (197)
Q Consensus        81 ~i~v~d~~~~~s~~~~~~~~~~~i~~~-------------------~-~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~  140 (197)
                      +|+|||++++++++.+ ..|+..+...                   . +++|+++||||.|+.+++..      ......
T Consensus        81 iIlVyDvtn~~Sf~~l-~~W~~ei~~~~~~~~~~~~~~~~~~~~~~~~~~~PiilVGnK~Dl~~~r~~------~~~~~~  153 (202)
T cd04102          81 IILVHDLTNRKSSQNL-QRWSLEALNKDTFPTGLLVTNGDYDSEQFGGNQIPLLVIGTKLDQIPEKES------SGNLVL  153 (202)
T ss_pred             EEEEEECcChHHHHHH-HHHHHHHHHhhccccccccccccccccccCCCCceEEEEEECccchhhccc------chHHHh
Confidence            9999999999999999 7898888653                   1 47899999999999765420      001112


Q ss_pred             HHHHHHHHHhCCCceEEeccCCCC
Q 036449          141 AQGEELRKLIGAPAYIECSSKTQQ  164 (197)
Q Consensus       141 ~~~~~~~~~~~~~~~~~~sa~~~~  164 (197)
                      .....++++.+. +.++.++.+..
T Consensus       154 ~~~~~ia~~~~~-~~i~~~c~~~~  176 (202)
T cd04102         154 TARGFVAEQGNA-EEINLNCTNGR  176 (202)
T ss_pred             hHhhhHHHhcCC-ceEEEecCCcc
Confidence            234567888888 78888888654

RabL3s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL3 lacks a prenylation site at the C-terminus. The specific function of RabL3 remains unknown.

>cd04153 Arl5_Arl8 Arl5/Arl8 subfamily

Probab=99.97  E-value=5.4e-29  Score=172.98  Aligned_cols=155  Identities=20%  Similarity=0.290  Sum_probs=117.6

Q ss_pred             CceeEEEEEcCCCCCHHHHHHHHhhCCCCCCCCCceeeeeeEEEEECCeEEEEEEEeCCCccccccccccCcCCCcEEEE
Q 036449            4 SRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFIL   83 (197)
Q Consensus         4 ~~~~~i~v~G~~~~GKstli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~   83 (197)
                      .+.++|+++|.+|+|||||++++..+.+.. +.++.+..+. ...++  .+.+.+||+||++.+...+..++..+|++++
T Consensus        13 ~~~~kv~~~G~~~~GKTsl~~~l~~~~~~~-~~~t~~~~~~-~~~~~--~~~~~l~D~~G~~~~~~~~~~~~~~~d~vi~   88 (174)
T cd04153          13 RKEYKVIIVGLDNAGKTTILYQFLLGEVVH-TSPTIGSNVE-EIVYK--NIRFLMWDIGGQESLRSSWNTYYTNTDAVIL   88 (174)
T ss_pred             CCccEEEEECCCCCCHHHHHHHHccCCCCC-cCCccccceE-EEEEC--CeEEEEEECCCCHHHHHHHHHHhhcCCEEEE
Confidence            456899999999999999999999887765 4566554432 33344  3778899999999999999999999999999


Q ss_pred             EEeCCCchhHHHHHHHHHHHHhhhC-CCCCEEEEeeCCcccCCcccccCCCCCCcccHHH-HHHHH----HHhCCCceEE
Q 036449           84 AFSLISKASYENVSKKWIPELKHYA-PGVPIILVGTKLDLRDDKQFFIDHPGAVPISTAQ-GEELR----KLIGAPAYIE  157 (197)
Q Consensus        84 v~d~~~~~s~~~~~~~~~~~i~~~~-~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~-~~~~~----~~~~~~~~~~  157 (197)
                      |+|+++++++......+...+.... ++.|+++++||+|+...            .+.++ ...+.    ...+. ++++
T Consensus        89 V~D~s~~~~~~~~~~~l~~~~~~~~~~~~p~viv~NK~Dl~~~------------~~~~~i~~~l~~~~~~~~~~-~~~~  155 (174)
T cd04153          89 VIDSTDRERLPLTKEELYKMLAHEDLRKAVLLVLANKQDLKGA------------MTPAEISESLGLTSIRDHTW-HIQG  155 (174)
T ss_pred             EEECCCHHHHHHHHHHHHHHHhchhhcCCCEEEEEECCCCCCC------------CCHHHHHHHhCcccccCCce-EEEe
Confidence            9999999998887444444444332 57999999999998542            11222 12221    12233 6899


Q ss_pred             eccCCCCCHHHHHHHHHH
Q 036449          158 CSSKTQQNVKAVFDAAIR  175 (197)
Q Consensus       158 ~sa~~~~~i~~l~~~i~~  175 (197)
                      +||++|.|++++|++|.+
T Consensus       156 ~SA~~g~gi~e~~~~l~~  173 (174)
T cd04153         156 CCALTGEGLPEGLDWIAS  173 (174)
T ss_pred             cccCCCCCHHHHHHHHhc
Confidence            999999999999999875

Arl5 (Arf-like 5) and Arl8, like Arl4 and Arl7, are localized to the nucleus and nucleolus. Arl5 is developmentally regulated during embryogenesis in mice. Human Arl5 interacts with the heterochromatin protein 1-alpha (HP1alpha), a nonhistone chromosomal protein that is associated with heterochromatin and telomeres, and prevents telomere fusion. Arl5 may also play a role in embryonic nuclear dynamics and/or signaling cascades. Arl8 was identified from a fetal cartilage cDNA library. It is found in brain, heart, lung, cartilage, and kidney. No function has been assigned for Arl8 to date.

>cd04157 Arl6 Arl6 subfamily

Probab=99.96  E-value=5.2e-29  Score=171.10  Aligned_cols=151  Identities=19%  Similarity=0.192  Sum_probs=113.1

Q ss_pred             EEEEEcCCCCCHHHHHHHHhhCC-CCCCCCCceeeeeeEEEEECCeEEEEEEEeCCCccccccccccCcCCCcEEEEEEe
Q 036449            8 KCVTVGDGAVGKTCLLISYTSNT-FPTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFS   86 (197)
Q Consensus         8 ~i~v~G~~~~GKstli~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d   86 (197)
                      +|+++|.+|||||||++++.... ....+.+|.+.... ...  ...+.+++||+||++.+..++..++.++|++|+|+|
T Consensus         1 ~i~~vG~~~~GKTsl~~~l~~~~~~~~~~~~t~g~~~~-~~~--~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~D   77 (162)
T cd04157           1 NILVVGLDNSGKTTIINQLKPENAQSQIIVPTVGFNVE-SFE--KGNLSFTAFDMSGQGKYRGLWEHYYKNIQGIIFVID   77 (162)
T ss_pred             CEEEECCCCCCHHHHHHHHcccCCCcceecCccccceE-EEE--ECCEEEEEEECCCCHhhHHHHHHHHccCCEEEEEEe
Confidence            58999999999999999999875 35556677653322 222  234788999999999999999999999999999999


Q ss_pred             CCCchhHHHHHHHHHHHHhhh----CCCCCEEEEeeCCcccCCcccccCCCCCCcccHHHHH---HHHH--HhCCCceEE
Q 036449           87 LISKASYENVSKKWIPELKHY----APGVPIILVGTKLDLRDDKQFFIDHPGAVPISTAQGE---ELRK--LIGAPAYIE  157 (197)
Q Consensus        87 ~~~~~s~~~~~~~~~~~i~~~----~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~---~~~~--~~~~~~~~~  157 (197)
                      ++++.++... ..|+..+...    .++.|+++|+||+|+.+...            .++..   .+..  .... .+++
T Consensus        78 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~p~iiv~NK~Dl~~~~~------------~~~~~~~l~~~~~~~~~~-~~~~  143 (162)
T cd04157          78 SSDRLRLVVV-KDELELLLNHPDIKHRRVPILFFANKMDLPDALT------------AVKITQLLGLENIKDKPW-HIFA  143 (162)
T ss_pred             CCcHHHHHHH-HHHHHHHHcCcccccCCCCEEEEEeCccccCCCC------------HHHHHHHhCCccccCceE-EEEE
Confidence            9999998877 5555555332    14799999999999965321            11111   1111  1122 5899


Q ss_pred             eccCCCCCHHHHHHHHHH
Q 036449          158 CSSKTQQNVKAVFDAAIR  175 (197)
Q Consensus       158 ~sa~~~~~i~~l~~~i~~  175 (197)
                      +||++|.|++++|++|.+
T Consensus       144 ~Sa~~g~gv~~~~~~l~~  161 (162)
T cd04157         144 SNALTGEGLDEGVQWLQA  161 (162)
T ss_pred             eeCCCCCchHHHHHHHhc
Confidence            999999999999999865

Arl6 (Arf-like 6) forms a subfamily of the Arf family of small GTPases. Arl6 expression is limited to the brain and kidney in adult mice, but it is expressed in the neural plate and somites during embryogenesis, suggesting a possible role for Arl6 in early development. Arl6 is also believed to have a role in cilia or flagella function. Several proteins have been identified that bind Arl6, including Arl6 interacting protein (Arl6ip), and SEC61beta, a subunit of the heterotrimeric conducting channel SEC61p. Based on Arl6 binding to these effectors, Arl6 is also proposed to play a role in protein transport, membrane trafficking, or cell signaling during hematopoietic maturation. At least three specific homozygous Arl6 mutations in humans have been found to cause Bardet-Biedl syndrome, a disorder characterized by obesity, retinopathy, polydactyly, renal and cardiac malformations, learning disabilities, and hypogenitalism. Older literature suggests that A

>cd04161 Arl2l1_Arl13_like Arl2l1/Arl13 subfamily

Probab=99.96  E-value=4.2e-29  Score=172.37  Aligned_cols=157  Identities=19%  Similarity=0.233  Sum_probs=117.2

Q ss_pred             EEEEEcCCCCCHHHHHHHHhhCCCCCCCCCceeeeeeEEEEECCeEEEEEEEeCCCccccccccccCcCCCcEEEEEEeC
Q 036449            8 KCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSL   87 (197)
Q Consensus         8 ~i~v~G~~~~GKstli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~   87 (197)
                      +|+++|.+|||||||++++.+. +...+.+|.+.. ...+..+  .+.+++||+||++.++.++..++.++|++|+|||.
T Consensus         1 ~i~~~G~~~~GKTsl~~~l~~~-~~~~~~~t~g~~-~~~~~~~--~~~~~i~D~~G~~~~~~~~~~~~~~a~~ii~V~D~   76 (167)
T cd04161           1 TLLTVGLDNAGKTTLVSALQGE-IPKKVAPTVGFT-PTKLRLD--KYEVCIFDLGGGANFRGIWVNYYAEAHGLVFVVDS   76 (167)
T ss_pred             CEEEECCCCCCHHHHHHHHhCC-CCccccCcccce-EEEEEEC--CEEEEEEECCCcHHHHHHHHHHHcCCCEEEEEEEC
Confidence            4899999999999999999876 666677777643 2334444  47788999999999999999999999999999999


Q ss_pred             CCchhHHHHHHHHHHHHhhhC--CCCCEEEEeeCCcccCCcccccCCCCCCcccHHHHHHHHHHhCC-CceEEeccCCC-
Q 036449           88 ISKASYENVSKKWIPELKHYA--PGVPIILVGTKLDLRDDKQFFIDHPGAVPISTAQGEELRKLIGA-PAYIECSSKTQ-  163 (197)
Q Consensus        88 ~~~~s~~~~~~~~~~~i~~~~--~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~sa~~~-  163 (197)
                      +++.+++.+ ..|+..+....  .+.|+++|+||+|+......      ...........+++..+. ..+++|||++| 
T Consensus        77 s~~~s~~~~-~~~l~~l~~~~~~~~~piliv~NK~Dl~~~~~~------~~i~~~~~l~~~~~~~~~~~~~~~~Sa~~g~  149 (167)
T cd04161          77 SDDDRVQEV-KEILRELLQHPRVSGKPILVLANKQDKKNALLG------ADVIEYLSLEKLVNENKSLCHIEPCSAIEGL  149 (167)
T ss_pred             CchhHHHHH-HHHHHHHHcCccccCCcEEEEEeCCCCcCCCCH------HHHHHhcCcccccCCCCceEEEEEeEceeCC
Confidence            999999988 56666665432  58999999999999764310      000011112233333332 25777999998 


Q ss_pred             -----CCHHHHHHHHHH
Q 036449          164 -----QNVKAVFDAAIR  175 (197)
Q Consensus       164 -----~~i~~l~~~i~~  175 (197)
                           .|+.+.|+||..
T Consensus       150 ~~~~~~g~~~~~~wl~~  166 (167)
T cd04161         150 GKKIDPSIVEGLRWLLA  166 (167)
T ss_pred             CCccccCHHHHHHHHhc
Confidence                 899999999974

Arl2l1 (Arl2-like protein 1) and Arl13 form a subfamily of the Arf family of small GTPases. Arl2l1 was identified in human cells during a search for the gene(s) responsible for Bardet-Biedl syndrome (BBS). Like Arl6, the identified BBS gene, Arl2l1 is proposed to have cilia-specific functions. Arl13 is found on the X chromosome, but its expression has not been confirmed; it may be a pseudogene.

>cd04151 Arl1 Arl1 subfamily

Probab=99.96  E-value=2.2e-29  Score=172.41  Aligned_cols=151  Identities=18%  Similarity=0.241  Sum_probs=112.5

Q ss_pred             EEEEEcCCCCCHHHHHHHHhhCCCCCCCCCceeeeeeEEEEECCeEEEEEEEeCCCccccccccccCcCCCcEEEEEEeC
Q 036449            8 KCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSL   87 (197)
Q Consensus         8 ~i~v~G~~~~GKstli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~   87 (197)
                      ||+++|.+++|||||++++..+.+.. +.+|.+.... ....  ..+.+++||+||++.+...+..++..++++|+|+|+
T Consensus         1 kv~lvG~~~~GKTsl~~~l~~~~~~~-~~~t~~~~~~-~~~~--~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~ii~v~d~   76 (158)
T cd04151           1 RILILGLDNAGKTTILYRLQLGEVVT-TIPTIGFNVE-TVTY--KNLKFQVWDLGGQTSIRPYWRCYYSNTDAIIYVVDS   76 (158)
T ss_pred             CEEEECCCCCCHHHHHHHHccCCCcC-cCCccCcCeE-EEEE--CCEEEEEEECCCCHHHHHHHHHHhcCCCEEEEEEEC
Confidence            68999999999999999998777654 3555543332 2223  347789999999999999999999999999999999


Q ss_pred             CCchhHHHHHHHHHHHHhhhC-CCCCEEEEeeCCcccCCcccccCCCCCCcccHHHH-HHHH----HHhCCCceEEeccC
Q 036449           88 ISKASYENVSKKWIPELKHYA-PGVPIILVGTKLDLRDDKQFFIDHPGAVPISTAQG-EELR----KLIGAPAYIECSSK  161 (197)
Q Consensus        88 ~~~~s~~~~~~~~~~~i~~~~-~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~-~~~~----~~~~~~~~~~~sa~  161 (197)
                      +++.++......|...++... ++.|+++|+||+|+.+...            ..+. ..+.    ...+. +++++||+
T Consensus        77 ~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~Dl~~~~~------------~~~i~~~~~~~~~~~~~~-~~~~~Sa~  143 (158)
T cd04151          77 TDRDRLGTAKEELHAMLEEEELKGAVLLVFANKQDMPGALS------------EAEISEKLGLSELKDRTW-SIFKTSAI  143 (158)
T ss_pred             CCHHHHHHHHHHHHHHHhchhhcCCcEEEEEeCCCCCCCCC------------HHHHHHHhCccccCCCcE-EEEEeecc
Confidence            999888776445554544332 5799999999999964321            1111 1111    11122 69999999


Q ss_pred             CCCCHHHHHHHHHH
Q 036449          162 TQQNVKAVFDAAIR  175 (197)
Q Consensus       162 ~~~~i~~l~~~i~~  175 (197)
                      ++.|++++|++|++
T Consensus       144 ~~~gi~~l~~~l~~  157 (158)
T cd04151         144 KGEGLDEGMDWLVN  157 (158)
T ss_pred             CCCCHHHHHHHHhc
Confidence            99999999999875

Arl1 (Arf-like 1) localizes to the Golgi complex, where it is believed to recruit effector proteins to the trans-Golgi network. Like most members of the Arf family, Arl1 is myristoylated at its N-terminal helix and mutation of the myristoylation site disrupts Golgi targeting. In humans, the Golgi-localized proteins golgin-97 and golgin-245 have been identified as Arl1 effectors. Golgins are large coiled-coil proteins found in the Golgi, and these golgins contain a C-terminal GRIP domain, which is the site of Arl1 binding. Additional Arl1 effectors include the GARP (Golgi-associated retrograde protein)/VFT (Vps53) vesicle-tethering complex and Arfaptin 2. Arl1 is not required for exocytosis, but appears necessary for trafficking from the endosomes to the Golgi. In Drosophila zygotes, mutation of Arl1 is lethal, and in the host-bloodstream form of Trypanosoma brucei, Arl1 is essential for viability.

>cd00879 Sar1 Sar1 subfamily

Probab=99.96  E-value=2.4e-28  Score=172.05  Aligned_cols=157  Identities=19%  Similarity=0.291  Sum_probs=119.8

Q ss_pred             CceeEEEEEcCCCCCHHHHHHHHhhCCCCCCCCCceeeeeeEEEEECCeEEEEEEEeCCCccccccccccCcCCCcEEEE
Q 036449            4 SRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFIL   83 (197)
Q Consensus         4 ~~~~~i~v~G~~~~GKstli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~   83 (197)
                      .+..+|+++|++|||||||++++..+.+. .+.+|.+... ..+.+++  +.+.+||+||++.+...+..++.+++++++
T Consensus        17 ~~~~ki~ilG~~~~GKStLi~~l~~~~~~-~~~~T~~~~~-~~i~~~~--~~~~l~D~~G~~~~~~~~~~~~~~ad~iil   92 (190)
T cd00879          17 NKEAKILFLGLDNAGKTTLLHMLKDDRLA-QHVPTLHPTS-EELTIGN--IKFKTFDLGGHEQARRLWKDYFPEVDGIVF   92 (190)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhcCCCc-ccCCccCcce-EEEEECC--EEEEEEECCCCHHHHHHHHHHhccCCEEEE
Confidence            46789999999999999999999987764 4555554332 3444555  678899999999888888889999999999


Q ss_pred             EEeCCCchhHHHHHHHHHHHHhh-hC-CCCCEEEEeeCCcccCCcccccCCCCCCcccHHHHHHHHHHh-----------
Q 036449           84 AFSLISKASYENVSKKWIPELKH-YA-PGVPIILVGTKLDLRDDKQFFIDHPGAVPISTAQGEELRKLI-----------  150 (197)
Q Consensus        84 v~d~~~~~s~~~~~~~~~~~i~~-~~-~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------  150 (197)
                      |+|+++..+++.. ..++..+.. .. .+.|+++++||+|+...            +..++.+.+....           
T Consensus        93 V~D~~~~~s~~~~-~~~~~~i~~~~~~~~~pvivv~NK~Dl~~~------------~~~~~~~~~~~~~~~~~~~~~~~~  159 (190)
T cd00879          93 LVDAADPERFQES-KEELDSLLSDEELANVPFLILGNKIDLPGA------------VSEEELRQALGLYGTTTGKGVSLK  159 (190)
T ss_pred             EEECCcHHHHHHH-HHHHHHHHcCccccCCCEEEEEeCCCCCCC------------cCHHHHHHHhCccccccccccccc
Confidence            9999999998877 444444433 22 57999999999999642            3344555444321           


Q ss_pred             ----CCCceEEeccCCCCCHHHHHHHHHHHH
Q 036449          151 ----GAPAYIECSSKTQQNVKAVFDAAIRVV  177 (197)
Q Consensus       151 ----~~~~~~~~sa~~~~~i~~l~~~i~~~~  177 (197)
                          ....+++|||++|.|++++|++|.+.+
T Consensus       160 ~~~~~~~~~~~~Sa~~~~gv~e~~~~l~~~~  190 (190)
T cd00879         160 VSGIRPIEVFMCSVVKRQGYGEAFRWLSQYL  190 (190)
T ss_pred             ccCceeEEEEEeEecCCCChHHHHHHHHhhC
Confidence                112589999999999999999998753

Sar1 is an essential component of COPII vesicle coats involved in export of cargo from the ER. The GTPase activity of Sar1 functions as a molecular switch to control protein-protein and protein-lipid interactions that direct vesicle budding from the ER. Activation of the GDP to the GTP-bound form of Sar1 involves the membrane-associated guanine nucleotide exchange factor (GEF) Sec12. Sar1 is unlike all Ras superfamily GTPases that use either myristoyl or prenyl groups to direct membrane association and function, in that Sar1 lacks such modification. Instead, Sar1 contains a unique nine-amino-acid N-terminal extension. This extension contains an evolutionarily conserved cluster of bulky hydrophobic amino acids, referred to as the Sar1-N-terminal activation recruitment (STAR) motif. The STAR motif mediates the recruitment of Sar1 to ER membranes and facilitates its interaction with mammalian Sec12 GEF leading to activation.

>PF00025 Arf: ADP-ribosylation factor family The prints entry specific to Sar1 proteins The Prosite entry specific to Sar1 proteins; InterPro: IPR006689 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases

Probab=99.96  E-value=8e-28  Score=166.96  Aligned_cols=159  Identities=24%  Similarity=0.343  Sum_probs=122.3

Q ss_pred             CCceeEEEEEcCCCCCHHHHHHHHhhCCCCCCCCCceeeeeeEEEEECCeEEEEEEEeCCCccccccccccCcCCCcEEE
Q 036449            3 ASRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFI   82 (197)
Q Consensus         3 ~~~~~~i~v~G~~~~GKstli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i   82 (197)
                      ..+.++|+++|..||||||+++++..+.... ..||.+... ..+...+  +.+.+||.+|+..++..|..++.++|++|
T Consensus        11 ~~~~~~ililGl~~sGKTtll~~l~~~~~~~-~~pT~g~~~-~~i~~~~--~~~~~~d~gG~~~~~~~w~~y~~~~~~iI   86 (175)
T PF00025_consen   11 KKKEIKILILGLDGSGKTTLLNRLKNGEISE-TIPTIGFNI-EEIKYKG--YSLTIWDLGGQESFRPLWKSYFQNADGII   86 (175)
T ss_dssp             TTSEEEEEEEESTTSSHHHHHHHHHSSSEEE-EEEESSEEE-EEEEETT--EEEEEEEESSSGGGGGGGGGGHTTESEEE
T ss_pred             cCcEEEEEEECCCccchHHHHHHhhhccccc-cCccccccc-ceeeeCc--EEEEEEeccccccccccceeeccccceeE
Confidence            4788999999999999999999998765443 455554332 3344555  67889999999999999999999999999


Q ss_pred             EEEeCCCchhHHHHHHHHHHHHhhhC-CCCCEEEEeeCCcccCCcccccCCCCCCcccHHHHHHHHHHh-----CCCceE
Q 036449           83 LAFSLISKASYENVSKKWIPELKHYA-PGVPIILVGTKLDLRDDKQFFIDHPGAVPISTAQGEELRKLI-----GAPAYI  156 (197)
Q Consensus        83 ~v~d~~~~~s~~~~~~~~~~~i~~~~-~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~  156 (197)
                      ||+|.++.+.+.+....+...+.... .+.|++|++||+|+.+..            +.++........     ....++
T Consensus        87 fVvDssd~~~l~e~~~~L~~ll~~~~~~~~piLIl~NK~D~~~~~------------~~~~i~~~l~l~~l~~~~~~~v~  154 (175)
T PF00025_consen   87 FVVDSSDPERLQEAKEELKELLNDPELKDIPILILANKQDLPDAM------------SEEEIKEYLGLEKLKNKRPWSVF  154 (175)
T ss_dssp             EEEETTGGGGHHHHHHHHHHHHTSGGGTTSEEEEEEESTTSTTSS------------THHHHHHHTTGGGTTSSSCEEEE
T ss_pred             EEEecccceeecccccchhhhcchhhcccceEEEEeccccccCcc------------hhhHHHhhhhhhhcccCCceEEE
Confidence            99999999999988555555555433 689999999999986532            233333222111     112578


Q ss_pred             EeccCCCCCHHHHHHHHHHHH
Q 036449          157 ECSSKTQQNVKAVFDAAIRVV  177 (197)
Q Consensus       157 ~~sa~~~~~i~~l~~~i~~~~  177 (197)
                      .|||.+|+|+.+.++||.+++
T Consensus       155 ~~sa~~g~Gv~e~l~WL~~~~  175 (175)
T PF00025_consen  155 SCSAKTGEGVDEGLEWLIEQI  175 (175)
T ss_dssp             EEBTTTTBTHHHHHHHHHHHH
T ss_pred             eeeccCCcCHHHHHHHHHhcC
Confidence            899999999999999999864

This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. This entry represents a branch of the small GTPase superfamily that includes the ADP ribosylation factor Arf, Arl (Arf-like), Arp (Arf-related proteins) and the remotely related Sar (Secretion-associated and Ras-related) proteins. Arf proteins are major regulators of vesicle biogenesis in intracellular traffic []. They cycle between inactive GDP-bound and active GTP-bound forms that bind selectively to effectors. The classical structural GDP/GTP switch is characterised by conformational changes at the so-called switch 1 and switch 2 regions, which bind tightly to the gamma-phosphate of GTP but poorly or not at all to the GDP nucleotide. Structural studies of Arf1 and Arf6 have revealed that although these proteins feature the switch 1 and 2 conformational changes, they depart from other small GTP-binding proteins in that they use an additional, unique switch to propagate structural information from one side of the protein to the other. The GDP/GTP structural cycles of human Arf1 and Arf6 feature a unique conformational change that affects the beta2-beta3 strands connecting switch 1 and switch 2 (interswitch) and also the amphipathic helical N terminus. In GDP-bound Arf1 and Arf6, the interswitch is retracted and forms a pocket to which the N-terminal helix binds, the latter serving as a molecular hasp to maintain the inactive conformation. In the GTP-bound form of these proteins, the interswitch undergoes a two-residue register shift that pulls switch 1 and switch 2 up, restoring an active conformation that can bind GTP. In this conformation, the interswitch projects out of the protein and extrudes the N-terminal hasp by occluding its binding pocket.; GO: 0005525 GTP binding; PDB: 2H57_B 2W83_B 3N5C_B 2J5X_A 3LVR_E 2BAO_A 3LVQ_E 2A5F_A 3PCR_B 1E0S_A ....

>cd04156 ARLTS1 ARLTS1 subfamily

Probab=99.96  E-value=4e-28  Score=166.41  Aligned_cols=152  Identities=21%  Similarity=0.287  Sum_probs=112.8

Q ss_pred             EEEEEcCCCCCHHHHHHHHhhCCCCCCCCCceeeeeeEEEEECCeEEEEEEEeCCCccccccccccCcCCCcEEEEEEeC
Q 036449            8 KCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSL   87 (197)
Q Consensus         8 ~i~v~G~~~~GKstli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~   87 (197)
                      +|+++|++|||||||++++..+.+... .+|.+..+ ..+.. +..+.+.+||+||++.+...+..++..+|++++|+|.
T Consensus         1 ~i~i~G~~~~GKTsl~~~~~~~~~~~~-~~t~~~~~-~~~~~-~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~iv~v~D~   77 (160)
T cd04156           1 QVLLLGLDSAGKSTLLYKLKHAELVTT-IPTVGFNV-EMLQL-EKHLSLTVWDVGGQEKMRTVWKCYLENTDGLVYVVDS   77 (160)
T ss_pred             CEEEEcCCCCCHHHHHHHHhcCCcccc-cCccCcce-EEEEe-CCceEEEEEECCCCHhHHHHHHHHhccCCEEEEEEEC
Confidence            689999999999999999999887643 45554332 22223 2457899999999999988888899999999999999


Q ss_pred             CCchhHHHHHHHHHHHHhhhC-CCCCEEEEeeCCcccCCcccccCCCCCCcccHHHHH------HHHHHhCCCceEEecc
Q 036449           88 ISKASYENVSKKWIPELKHYA-PGVPIILVGTKLDLRDDKQFFIDHPGAVPISTAQGE------ELRKLIGAPAYIECSS  160 (197)
Q Consensus        88 ~~~~s~~~~~~~~~~~i~~~~-~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~sa  160 (197)
                      +++.++......+...+.... .+.|+++|+||+|+....            ..++..      .+....+. +++++||
T Consensus        78 ~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~------------~~~~i~~~~~~~~~~~~~~~-~~~~~Sa  144 (160)
T cd04156          78 SDEARLDESQKELKHILKNEHIKGVPVVLLANKQDLPGAL------------TAEEITRRFKLKKYCSDRDW-YVQPCSA  144 (160)
T ss_pred             CcHHHHHHHHHHHHHHHhchhhcCCCEEEEEECcccccCc------------CHHHHHHHcCCcccCCCCcE-EEEeccc
Confidence            999998888433344444322 589999999999995421            112211      11111222 6899999


Q ss_pred             CCCCCHHHHHHHHHH
Q 036449          161 KTQQNVKAVFDAAIR  175 (197)
Q Consensus       161 ~~~~~i~~l~~~i~~  175 (197)
                      ++|.|++++|++|.+
T Consensus       145 ~~~~gv~~~~~~i~~  159 (160)
T cd04156         145 VTGEGLAEAFRKLAS  159 (160)
T ss_pred             ccCCChHHHHHHHhc
Confidence            999999999999865

ARLTS1 (Arf-like tumor suppressor gene 1), also known as Arl11, is a member of the Arf family of small GTPases that is believed to play a major role in apoptotic signaling. ARLTS1 is widely expressed and functions as a tumor suppressor gene in several human cancers. ARLTS1 is a low-penetrance suppressor that accounts for a small percentage of familial melanoma or familial chronic lymphocytic leukemia (CLL). ARLTS1 inactivation seems to occur most frequently through biallelic down-regulation by hypermethylation of the promoter. In breast cancer, ARLTS1 alterations were typically a combination of a hypomorphic polymorphism plus loss of heterozygosity. In a case of thyroid adenoma, ARLTS1 alterations were polymorphism plus promoter hypermethylation. The nonsense polymorphism Trp149Stop occurs with significantly greater frequency in familial cancer cases than in sporadic cancer cases, and the Cys148Arg polymorphism is associated with an increase in h

>cd04160 Arfrp1 Arfrp1 subfamily

Probab=99.96  E-value=6.1e-28  Score=166.62  Aligned_cols=151  Identities=23%  Similarity=0.322  Sum_probs=111.5

Q ss_pred             EEEEEcCCCCCHHHHHHHHhhCCC------CCCCCCceeeeeeEEEEECCeEEEEEEEeCCCccccccccccCcCCCcEE
Q 036449            8 KCVTVGDGAVGKTCLLISYTSNTF------PTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVF   81 (197)
Q Consensus         8 ~i~v~G~~~~GKstli~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~   81 (197)
                      +|+++|++|+|||||++++.....      ...+.+|..... ..+.+++  ..+.+||+||++.+..++..++..+|++
T Consensus         1 ~i~~vG~~~~GKstLi~~l~~~~~~~~~~~~~~~~~t~~~~~-~~~~~~~--~~~~l~Dt~G~~~~~~~~~~~~~~~~~~   77 (167)
T cd04160           1 SVLILGLDNAGKTTFLEQLKTLFSKYKGLPPSKITPTVGLNI-GTIEVGN--ARLKFWDLGGQESLRSLWDKYYAECHAI   77 (167)
T ss_pred             CEEEEecCCCCHHHHHHHHhhhcccccCCcccccCCccccce-EEEEECC--EEEEEEECCCChhhHHHHHHHhCCCCEE
Confidence            689999999999999999876432      223344443333 2344443  6788999999999998888899999999


Q ss_pred             EEEEeCCCchhHHHHHHHHHHHHhhh-C-CCCCEEEEeeCCcccCCcccccCCCCCCcccHHHHHHHHHH-------hCC
Q 036449           82 ILAFSLISKASYENVSKKWIPELKHY-A-PGVPIILVGTKLDLRDDKQFFIDHPGAVPISTAQGEELRKL-------IGA  152 (197)
Q Consensus        82 i~v~d~~~~~s~~~~~~~~~~~i~~~-~-~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~  152 (197)
                      ++|+|.++++++... ..|+..+... . ++.|+++++||+|+....            ..++...+...       .+.
T Consensus        78 v~vvd~~~~~~~~~~-~~~~~~~~~~~~~~~~p~ilv~NK~D~~~~~------------~~~~~~~~~~~~~~~~~~~~~  144 (167)
T cd04160          78 IYVIDSTDRERFEES-KSALEKVLRNEALEGVPLLILANKQDLPDAL------------SVEEIKEVFQDKAEEIGRRDC  144 (167)
T ss_pred             EEEEECchHHHHHHH-HHHHHHHHhChhhcCCCEEEEEEccccccCC------------CHHHHHHHhccccccccCCce
Confidence            999999999888887 4554444332 2 589999999999985532            22333333222       223


Q ss_pred             CceEEeccCCCCCHHHHHHHHHH
Q 036449          153 PAYIECSSKTQQNVKAVFDAAIR  175 (197)
Q Consensus       153 ~~~~~~sa~~~~~i~~l~~~i~~  175 (197)
                       +++++||++|.|+++++++|..
T Consensus       145 -~~~~~Sa~~g~gv~e~~~~l~~  166 (167)
T cd04160         145 -LVLPVSALEGTGVREGIEWLVE  166 (167)
T ss_pred             -EEEEeeCCCCcCHHHHHHHHhc
Confidence             7999999999999999999864

Arfrp1 (Arf-related protein 1), formerly known as ARP, is a membrane-associated Arf family member that lacks the N-terminal myristoylation motif. Arfrp1 is mainly associated with the trans-Golgi compartment and the trans-Golgi network, where it regulates the targeting of Arl1 and the GRIP domain-containing proteins, golgin-97 and golgin-245, onto Golgi membranes. It is also involved in the anterograde transport of the vesicular stomatitis virus G protein from the Golgi to the plasma membrane, and in the retrograde transport of TGN38 and Shiga toxin from endosomes to the trans-Golgi network. Arfrp1 also inhibits Arf/Sec7-dependent activation of phospholipase D. Deletion of Arfrp1 in mice causes embryonic lethality at the gastrulation stage and apoptosis of mesodermal cells, indicating its importance in development.

>PLN00023 GTP-binding protein; Provisional

Probab=99.96  E-value=1.5e-27  Score=176.11  Aligned_cols=148  Identities=20%  Similarity=0.313  Sum_probs=119.8

Q ss_pred             CCceeEEEEEcCCCCCHHHHHHHHhhCCCCCCCCCceeeee-eEEEEEC-------------CeEEEEEEEeCCCccccc
Q 036449            3 ASRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNF-SANVVVN-------------GSTVNLGLWDTAGQEDYN   68 (197)
Q Consensus         3 ~~~~~~i~v~G~~~~GKstli~~~~~~~~~~~~~~~~~~~~-~~~~~~~-------------~~~~~~~i~D~~G~~~~~   68 (197)
                      +...+||+++|..|||||||+++|..+.+...+.+|.+..+ ...+.++             +..+.++|||++|++.|.
T Consensus        18 ~~~~iKIVLLGdsGVGKTSLI~rf~~g~F~~~~~pTIG~d~~ik~I~~~~~~~~~~~ik~d~~k~v~LqIWDTAGqErfr   97 (334)
T PLN00023         18 PCGQVRVLVVGDSGVGKSSLVHLIVKGSSIARPPQTIGCTVGVKHITYGSPGSSSNSIKGDSERDFFVELWDVSGHERYK   97 (334)
T ss_pred             CccceEEEEECCCCCcHHHHHHHHhcCCcccccCCceeeeEEEEEEEECCcccccccccccCCceEEEEEEECCCChhhh
Confidence            34669999999999999999999999999888888886554 3444443             256889999999999999


Q ss_pred             cccccCcCCCcEEEEEEeCCCchhHHHHHHHHHHHHhhhC-------------CCCCEEEEeeCCcccCCcccccCCCCC
Q 036449           69 RLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYA-------------PGVPIILVGTKLDLRDDKQFFIDHPGA  135 (197)
Q Consensus        69 ~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~i~~~~-------------~~~~~ivv~nK~D~~~~~~~~~~~~~~  135 (197)
                      .++..++++++++|+|||++++++++.+ ..|+..+....             .++|++||+||+|+...+..    ...
T Consensus        98 sL~~~yyr~AdgiILVyDITdr~SFenL-~kWl~eI~~~~~~s~p~~s~~~~~~~ipIILVGNK~DL~~~~~~----r~~  172 (334)
T PLN00023         98 DCRSLFYSQINGVIFVHDLSQRRTKTSL-QKWASEVAATGTFSAPLGSGGPGGLPVPYIVIGNKADIAPKEGT----RGS  172 (334)
T ss_pred             hhhHHhccCCCEEEEEEeCCCHHHHHHH-HHHHHHHHHhcccccccccccccCCCCcEEEEEECccccccccc----ccc
Confidence            9999999999999999999999999999 78999888652             25899999999999653210    000


Q ss_pred             CcccHHHHHHHHHHhCCCce
Q 036449          136 VPISTAQGEELRKLIGAPAY  155 (197)
Q Consensus       136 ~~~~~~~~~~~~~~~~~~~~  155 (197)
                      ..+..+++++++.+.++.+.
T Consensus       173 s~~~~e~a~~~A~~~g~l~~  192 (334)
T PLN00023        173 SGNLVDAARQWVEKQGLLPS  192 (334)
T ss_pred             ccccHHHHHHHHHHcCCCcc
Confidence            11357899999999886543

>smart00178 SAR Sar1p-like members of the Ras-family of small GTPases

Probab=99.96  E-value=1.4e-27  Score=167.15  Aligned_cols=157  Identities=15%  Similarity=0.201  Sum_probs=116.4

Q ss_pred             CceeEEEEEcCCCCCHHHHHHHHhhCCCCCCCCCceeeeeeEEEEECCeEEEEEEEeCCCccccccccccCcCCCcEEEE
Q 036449            4 SRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFIL   83 (197)
Q Consensus         4 ~~~~~i~v~G~~~~GKstli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~   83 (197)
                      .+.++|+++|.+|||||||++++..+.+.. +.+|..... ..+.+++  +.+.+||+||++.++..+..++.++|++++
T Consensus        15 ~~~~~i~ivG~~~~GKTsli~~l~~~~~~~-~~~t~~~~~-~~~~~~~--~~~~~~D~~G~~~~~~~~~~~~~~ad~ii~   90 (184)
T smart00178       15 NKHAKILFLGLDNAGKTTLLHMLKNDRLAQ-HQPTQHPTS-EELAIGN--IKFTTFDLGGHQQARRLWKDYFPEVNGIVY   90 (184)
T ss_pred             cccCEEEEECCCCCCHHHHHHHHhcCCCcc-cCCccccce-EEEEECC--EEEEEEECCCCHHHHHHHHHHhCCCCEEEE
Confidence            677999999999999999999999876643 344443222 2233444  678899999999999999999999999999


Q ss_pred             EEeCCCchhHHHHHHHHHHHHhhhC-CCCCEEEEeeCCcccCCcccccCCCCCCcccHHHHHHHHH-----------HhC
Q 036449           84 AFSLISKASYENVSKKWIPELKHYA-PGVPIILVGTKLDLRDDKQFFIDHPGAVPISTAQGEELRK-----------LIG  151 (197)
Q Consensus        84 v~d~~~~~s~~~~~~~~~~~i~~~~-~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~  151 (197)
                      |+|++++.++......+...+.... ++.|+++|+||+|+...            ++.++..+...           ..+
T Consensus        91 vvD~~~~~~~~~~~~~l~~l~~~~~~~~~piliv~NK~Dl~~~------------~~~~~i~~~l~l~~~~~~~~~~~~~  158 (184)
T smart00178       91 LVDAYDKERFAESKRELDALLSDEELATVPFLILGNKIDAPYA------------ASEDELRYALGLTNTTGSKGKVGVR  158 (184)
T ss_pred             EEECCcHHHHHHHHHHHHHHHcChhhcCCCEEEEEeCccccCC------------CCHHHHHHHcCCCcccccccccCCc
Confidence            9999999998887433333333222 58999999999998642            22333322211           112


Q ss_pred             CCceEEeccCCCCCHHHHHHHHHHH
Q 036449          152 APAYIECSSKTQQNVKAVFDAAIRV  176 (197)
Q Consensus       152 ~~~~~~~sa~~~~~i~~l~~~i~~~  176 (197)
                      ...+++|||+++.|++++++||.+.
T Consensus       159 ~~~i~~~Sa~~~~g~~~~~~wl~~~  183 (184)
T smart00178      159 PLEVFMCSVVRRMGYGEGFKWLSQY  183 (184)
T ss_pred             eeEEEEeecccCCChHHHHHHHHhh
Confidence            3358999999999999999999865

Yeast SAR1 is an essential gene required for transport of secretory proteins from the endoplasmic reticulum to the Golgi apparatus.

>PTZ00099 rab6; Provisional

Probab=99.96  E-value=2.8e-27  Score=163.99  Aligned_cols=143  Identities=29%  Similarity=0.500  Sum_probs=122.4

Q ss_pred             CCCCCCCCCceeeee-eEEEEECCeEEEEEEEeCCCccccccccccCcCCCcEEEEEEeCCCchhHHHHHHHHHHHHhhh
Q 036449           29 NTFPTDYVPTVFDNF-SANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHY  107 (197)
Q Consensus        29 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~i~~~  107 (197)
                      +.|.+.+.+|.+..+ ...+.+++..+.+.||||||++.+..++..+++++|++|+|||++++++|+.+ ..|+..+...
T Consensus         3 ~~F~~~~~~Tig~~~~~~~~~~~~~~v~l~iwDt~G~e~~~~~~~~~~~~ad~~ilv~D~t~~~sf~~~-~~w~~~i~~~   81 (176)
T PTZ00099          3 DTFDNNYQSTIGIDFLSKTLYLDEGPVRLQLWDTAGQERFRSLIPSYIRDSAAAIVVYDITNRQSFENT-TKWIQDILNE   81 (176)
T ss_pred             CCcCCCCCCccceEEEEEEEEECCEEEEEEEEECCChHHhhhccHHHhCCCcEEEEEEECCCHHHHHHH-HHHHHHHHHh
Confidence            457788889987444 56678888899999999999999999999999999999999999999999998 6888877655


Q ss_pred             C-CCCCEEEEeeCCcccCCcccccCCCCCCcccHHHHHHHHHHhCCCceEEeccCCCCCHHHHHHHHHHHHcCCCch
Q 036449          108 A-PGVPIILVGTKLDLRDDKQFFIDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQQNVKAVFDAAIRVVLQPPKT  183 (197)
Q Consensus       108 ~-~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~l~~~i~~~~~~~~~~  183 (197)
                      . ++.|+++|+||+|+.+.+.          +..+++..++..++. .|+++||++|.|++++|++|++.+....+.
T Consensus        82 ~~~~~piilVgNK~DL~~~~~----------v~~~e~~~~~~~~~~-~~~e~SAk~g~nV~~lf~~l~~~l~~~~~~  147 (176)
T PTZ00099         82 RGKDVIIALVGNKTDLGDLRK----------VTYEEGMQKAQEYNT-MFHETSAKAGHNIKVLFKKIAAKLPNLDNS  147 (176)
T ss_pred             cCCCCeEEEEEECcccccccC----------CCHHHHHHHHHHcCC-EEEEEECCCCCCHHHHHHHHHHHHHhcccc
Confidence            4 6899999999999965433          667788888888887 799999999999999999999998765433

>cd00878 Arf_Arl Arf (ADP-ribosylation factor)/Arl (Arf-like) small GTPases

Probab=99.95  E-value=1.3e-27  Score=163.62  Aligned_cols=150  Identities=21%  Similarity=0.279  Sum_probs=113.4

Q ss_pred             EEEEEcCCCCCHHHHHHHHhhCCCCCCCCCceeeeeeEEEEECCeEEEEEEEeCCCccccccccccCcCCCcEEEEEEeC
Q 036449            8 KCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSL   87 (197)
Q Consensus         8 ~i~v~G~~~~GKstli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~   87 (197)
                      ||+++|.+|||||||++++.++.+. .+.++.+.... ...+.  .+.+.+||+||++.+...+..++..+|++++|||+
T Consensus         1 ki~iiG~~~~GKssli~~~~~~~~~-~~~~t~~~~~~-~~~~~--~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~D~   76 (158)
T cd00878           1 RILILGLDGAGKTTILYKLKLGEVV-TTIPTIGFNVE-TVEYK--NVSFTVWDVGGQDKIRPLWKHYYENTNGIIFVVDS   76 (158)
T ss_pred             CEEEEcCCCCCHHHHHHHHhcCCCC-CCCCCcCcceE-EEEEC--CEEEEEEECCCChhhHHHHHHHhccCCEEEEEEEC
Confidence            6899999999999999999988743 34455543322 23333  36788999999999999999999999999999999


Q ss_pred             CCchhHHHHHHHHHHHHhhhC--CCCCEEEEeeCCcccCCcccccCCCCCCcccHHHHHHHHH-----HhCCCceEEecc
Q 036449           88 ISKASYENVSKKWIPELKHYA--PGVPIILVGTKLDLRDDKQFFIDHPGAVPISTAQGEELRK-----LIGAPAYIECSS  160 (197)
Q Consensus        88 ~~~~s~~~~~~~~~~~i~~~~--~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~sa  160 (197)
                      +++.++... ..|+..+....  ++.|+++|+||+|+.....            .++......     .... +++++||
T Consensus        77 ~~~~~~~~~-~~~~~~~~~~~~~~~~piiiv~nK~D~~~~~~------------~~~~~~~~~~~~~~~~~~-~~~~~Sa  142 (158)
T cd00878          77 SDRERIEEA-KEELHKLLNEEELKGVPLLIFANKQDLPGALS------------VSELIEKLGLEKILGRRW-HIQPCSA  142 (158)
T ss_pred             CCHHHHHHH-HHHHHHHHhCcccCCCcEEEEeeccCCccccC------------HHHHHHhhChhhccCCcE-EEEEeeC
Confidence            999999988 45554444332  5899999999999965331            222222211     1223 7999999


Q ss_pred             CCCCCHHHHHHHHHH
Q 036449          161 KTQQNVKAVFDAAIR  175 (197)
Q Consensus       161 ~~~~~i~~l~~~i~~  175 (197)
                      ++|.|++++|++|..
T Consensus       143 ~~~~gv~~~~~~l~~  157 (158)
T cd00878         143 VTGDGLDEGLDWLLQ  157 (158)
T ss_pred             CCCCCHHHHHHHHhh
Confidence            999999999999875

Arf proteins are activators of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. Arfs are N-terminally myristoylated. Members of the Arf family are regulators of vesicle formation in intracellular traffic that interact reversibly with membranes of the secretory and endocytic compartments in a GTP-dependent manner. They depart from other small GTP-binding proteins by a unique structural device, interswitch toggle, that implements front-back communication from N-terminus to the nucleotide binding site. Arf-like (Arl) proteins are close relatives of the Arf, but only Arl1 has been shown to function in membrane traffic like the Arf proteins. Arl2 has an unrelated function in the folding of native tubulin, and Arl4 may function in the nucleus. Most other Arf family proteins are so far relatively poorly characterized. Thu

>cd01897 NOG NOG1 is a nucleolar GTP-binding protein present in eukaryotes ranging from trypanosomes to humans

Probab=99.95  E-value=2.1e-26  Score=159.11  Aligned_cols=156  Identities=23%  Similarity=0.219  Sum_probs=106.7

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhhCCCCCC-CCCceeeeeeEEEEECCeEEEEEEEeCCCccccccccc---------cCcC
Q 036449            7 IKCVTVGDGAVGKTCLLISYTSNTFPTD-YVPTVFDNFSANVVVNGSTVNLGLWDTAGQEDYNRLRP---------LSYR   76 (197)
Q Consensus         7 ~~i~v~G~~~~GKstli~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~---------~~~~   76 (197)
                      .+|+++|.+|+|||||++++....+... +..++..........  ..+.+++|||||+........         ....
T Consensus         1 ~~i~~~G~~~~GKssli~~l~~~~~~~~~~~~~t~~~~~~~~~~--~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~~~~~   78 (168)
T cd01897           1 PTLVIAGYPNVGKSSLVNKLTRAKPEVAPYPFTTKSLFVGHFDY--KYLRWQVIDTPGLLDRPLEERNTIEMQAITALAH   78 (168)
T ss_pred             CeEEEEcCCCCCHHHHHHHHhcCCCccCCCCCcccceeEEEEcc--CceEEEEEECCCcCCccccCCchHHHHHHHHHHh
Confidence            3799999999999999999998876422 222222222222222  347889999999843111000         0112


Q ss_pred             CCcEEEEEEeCCCchhH--HHHHHHHHHHHhhhCCCCCEEEEeeCCcccCCcccccCCCCCCcccHHHHHHHHHHhCCCc
Q 036449           77 GADVFILAFSLISKASY--ENVSKKWIPELKHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPISTAQGEELRKLIGAPA  154 (197)
Q Consensus        77 ~~~~~i~v~d~~~~~s~--~~~~~~~~~~i~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  154 (197)
                      .+|++++|+|+++..++  +.. ..|+..+....++.|+++|+||+|+.....          ..  ...++....+. +
T Consensus        79 ~~d~~l~v~d~~~~~~~~~~~~-~~~~~~l~~~~~~~pvilv~NK~Dl~~~~~----------~~--~~~~~~~~~~~-~  144 (168)
T cd01897          79 LRAAVLFLFDPSETCGYSLEEQ-LSLFEEIKPLFKNKPVIVVLNKIDLLTFED----------LS--EIEEEEELEGE-E  144 (168)
T ss_pred             ccCcEEEEEeCCcccccchHHH-HHHHHHHHhhcCcCCeEEEEEccccCchhh----------HH--HHHHhhhhccC-c
Confidence            36899999999987653  444 567777766556899999999999965432          11  13445544444 8


Q ss_pred             eEEeccCCCCCHHHHHHHHHHHHc
Q 036449          155 YIECSSKTQQNVKAVFDAAIRVVL  178 (197)
Q Consensus       155 ~~~~sa~~~~~i~~l~~~i~~~~~  178 (197)
                      ++++||++|.|++++|+++.+.+.
T Consensus       145 ~~~~Sa~~~~gi~~l~~~l~~~~~  168 (168)
T cd01897         145 VLKISTLTEEGVDEVKNKACELLL  168 (168)
T ss_pred             eEEEEecccCCHHHHHHHHHHHhC
Confidence            999999999999999999998763

NOG1 is functionally linked to ribosome biogenesis and found in association with the nuclear pore complexes and identified in many preribosomal complexes. Thus, defects in NOG1 can lead to defects in 60S biogenesis. The S. cerevisiae NOG1 gene is essential for cell viability, and mutations in the predicted G motifs abrogate function. It is a member of the ODN family of GTP-binding proteins that also includes the bacterial Obg and DRG proteins.

>cd04159 Arl10_like Arl10-like subfamily

Probab=99.95  E-value=3.8e-27  Score=160.96  Aligned_cols=151  Identities=23%  Similarity=0.341  Sum_probs=115.4

Q ss_pred             EEEEcCCCCCHHHHHHHHhhCCCCCCCCCceeeeeeEEEEECCeEEEEEEEeCCCccccccccccCcCCCcEEEEEEeCC
Q 036449            9 CVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLI   88 (197)
Q Consensus         9 i~v~G~~~~GKstli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~   88 (197)
                      |+++|++|+|||||++++.+..+...+.++.+..+.. ...++  +.+.+||+||++.+...+..++..+|++++|+|++
T Consensus         2 i~i~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~-~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~   78 (159)
T cd04159           2 ITLVGLQNSGKTTLVNVIAGGQFSEDTIPTVGFNMRK-VTKGN--VTLKVWDLGGQPRFRSMWERYCRGVNAIVYVVDAA   78 (159)
T ss_pred             EEEEcCCCCCHHHHHHHHccCCCCcCccCCCCcceEE-EEECC--EEEEEEECCCCHhHHHHHHHHHhcCCEEEEEEECC
Confidence            7999999999999999999999988888877644432 33333  77899999999999999999999999999999999


Q ss_pred             CchhHHHHHHHHHHHHhhhC-CCCCEEEEeeCCcccCCcccccCCCCCCcccHHHHH-HH----HHHhCCCceEEeccCC
Q 036449           89 SKASYENVSKKWIPELKHYA-PGVPIILVGTKLDLRDDKQFFIDHPGAVPISTAQGE-EL----RKLIGAPAYIECSSKT  162 (197)
Q Consensus        89 ~~~s~~~~~~~~~~~i~~~~-~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~-~~----~~~~~~~~~~~~sa~~  162 (197)
                      +..++......+...+.... ++.|+++|+||+|+.+...            ..+.. .+    ....+. +++++|+++
T Consensus        79 ~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~------------~~~~~~~~~~~~~~~~~~-~~~~~Sa~~  145 (159)
T cd04159          79 DRTALEAAKNELHDLLEKPSLEGIPLLVLGNKNDLPGALS------------VDELIEQMNLKSITDREV-SCYSISCKE  145 (159)
T ss_pred             CHHHHHHHHHHHHHHHcChhhcCCCEEEEEeCccccCCcC------------HHHHHHHhCcccccCCce-EEEEEEecc
Confidence            99888877333344333322 5789999999999865321            11111 11    111223 689999999


Q ss_pred             CCCHHHHHHHHHH
Q 036449          163 QQNVKAVFDAAIR  175 (197)
Q Consensus       163 ~~~i~~l~~~i~~  175 (197)
                      +.|+++++++|++
T Consensus       146 ~~gi~~l~~~l~~  158 (159)
T cd04159         146 KTNIDIVLDWLIK  158 (159)
T ss_pred             CCChHHHHHHHhh
Confidence            9999999999875

Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved.

>cd01890 LepA LepA subfamily

Probab=99.95  E-value=1.7e-26  Score=161.13  Aligned_cols=154  Identities=18%  Similarity=0.208  Sum_probs=111.4

Q ss_pred             EEEEEcCCCCCHHHHHHHHhhCC-------CCCCCCCce------eeee-eE--EEEE---CCeEEEEEEEeCCCccccc
Q 036449            8 KCVTVGDGAVGKTCLLISYTSNT-------FPTDYVPTV------FDNF-SA--NVVV---NGSTVNLGLWDTAGQEDYN   68 (197)
Q Consensus         8 ~i~v~G~~~~GKstli~~~~~~~-------~~~~~~~~~------~~~~-~~--~~~~---~~~~~~~~i~D~~G~~~~~   68 (197)
                      +|+++|.+++|||||++++....       +...+.++.      +..+ ..  ...+   ++..+.+++|||||++++.
T Consensus         2 ni~~vG~~~~GKssL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~   81 (179)
T cd01890           2 NFSIIAHIDHGKSTLADRLLELTGTVSKREMKEQVLDSMDLERERGITIKAQTVRLNYKAKDGQEYLLNLIDTPGHVDFS   81 (179)
T ss_pred             cEEEEeecCCCHHHHHHHHHHHhCCCCcCCCceEeccCChhHHHCCCeEecceEEEEEecCCCCcEEEEEEECCCChhhH
Confidence            68999999999999999998742       212222221      1111 11  1122   5567889999999999999


Q ss_pred             cccccCcCCCcEEEEEEeCCCchhHHHHHHHHHHHHhhhCCCCCEEEEeeCCcccCCcccccCCCCCCcccHHHHHHHHH
Q 036449           69 RLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPISTAQGEELRK  148 (197)
Q Consensus        69 ~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~  148 (197)
                      ..+..++..+|++|+|+|++++.+.+.. ..|.... .  .+.|+++|+||+|+.+..            ......++++
T Consensus        82 ~~~~~~~~~ad~~i~v~D~~~~~~~~~~-~~~~~~~-~--~~~~iiiv~NK~Dl~~~~------------~~~~~~~~~~  145 (179)
T cd01890          82 YEVSRSLAACEGALLLVDATQGVEAQTL-ANFYLAL-E--NNLEIIPVINKIDLPSAD------------PERVKQQIED  145 (179)
T ss_pred             HHHHHHHHhcCeEEEEEECCCCccHhhH-HHHHHHH-H--cCCCEEEEEECCCCCcCC------------HHHHHHHHHH
Confidence            8888899999999999999998776665 4443322 2  368999999999985422            1223345566


Q ss_pred             HhCCC--ceEEeccCCCCCHHHHHHHHHHHH
Q 036449          149 LIGAP--AYIECSSKTQQNVKAVFDAAIRVV  177 (197)
Q Consensus       149 ~~~~~--~~~~~sa~~~~~i~~l~~~i~~~~  177 (197)
                      .++..  .++++||++|.|++++|++|.+.+
T Consensus       146 ~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~~  176 (179)
T cd01890         146 VLGLDPSEAILVSAKTGLGVEDLLEAIVERI  176 (179)
T ss_pred             HhCCCcccEEEeeccCCCCHHHHHHHHHhhC
Confidence            66652  489999999999999999998876

LepA belongs to the GTPase family of and exhibits significant homology to the translation factors EF-G and EF-Tu, indicating its possible involvement in translation and association with the ribosome. LepA is ubiquitous in bacteria and eukaryota (e.g. yeast GUF1p), but is missing from archaea. This pattern of phyletic distribution suggests that LepA evolved through a duplication of the EF-G gene in bacteria, followed by early transfer into the eukaryotic lineage, most likely from the promitochondrial endosymbiont. Yeast GUF1p is not essential and mutant cells did not reveal any marked phenotype.

>KOG0070 consensus GTP-binding ADP-ribosylation factor Arf1 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.94  E-value=2.1e-26  Score=154.36  Aligned_cols=166  Identities=18%  Similarity=0.227  Sum_probs=129.9

Q ss_pred             CCCceeEEEEEcCCCCCHHHHHHHHhhCCCCCCCCCceeeeeeEEEEECCeEEEEEEEeCCCccccccccccCcCCCcEE
Q 036449            2 SASRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVF   81 (197)
Q Consensus         2 ~~~~~~~i~v~G~~~~GKstli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~   81 (197)
                      ...+..+|+++|-.++||||++.++..+..... .||.+.... .+.+.  .+.+++||.+||+.++..|..|+.+.+++
T Consensus        13 ~~~~e~~IlmlGLD~AGKTTILykLk~~E~vtt-vPTiGfnVE-~v~yk--n~~f~vWDvGGq~k~R~lW~~Y~~~t~~l   88 (181)
T KOG0070|consen   13 FGKKEMRILMVGLDAAGKTTILYKLKLGEIVTT-VPTIGFNVE-TVEYK--NISFTVWDVGGQEKLRPLWKHYFQNTQGL   88 (181)
T ss_pred             cCcceEEEEEEeccCCCceeeeEeeccCCcccC-CCcccccee-EEEEc--ceEEEEEecCCCcccccchhhhccCCcEE
Confidence            456789999999999999999999998887766 777764443 33344  48899999999999999999999999999


Q ss_pred             EEEEeCCCchhHHHHHHHHHHHHhhhC-CCCCEEEEeeCCcccCCcccccCCCCCCcccHHHHHHHHHHhCCC-ceEEec
Q 036449           82 ILAFSLISKASYENVSKKWIPELKHYA-PGVPIILVGTKLDLRDDKQFFIDHPGAVPISTAQGEELRKLIGAP-AYIECS  159 (197)
Q Consensus        82 i~v~d~~~~~s~~~~~~~~~~~i~~~~-~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~s  159 (197)
                      |||+|.+|++.+.++...+...+.... .+.|+++++||.|+...-.       .  ........+..-.+.. .+..|+
T Consensus        89 IfVvDS~Dr~Ri~eak~eL~~~l~~~~l~~~~llv~aNKqD~~~als-------~--~ei~~~L~l~~l~~~~w~iq~~~  159 (181)
T KOG0070|consen   89 IFVVDSSDRERIEEAKEELHRMLAEPELRNAPLLVFANKQDLPGALS-------A--AEITNKLGLHSLRSRNWHIQSTC  159 (181)
T ss_pred             EEEEeCCcHHHHHHHHHHHHHHHcCcccCCceEEEEechhhccccCC-------H--HHHHhHhhhhccCCCCcEEeecc
Confidence            999999999999999777777777665 6899999999999976432       0  1111122222222222 345599


Q ss_pred             cCCCCCHHHHHHHHHHHHcCC
Q 036449          160 SKTQQNVKAVFDAAIRVVLQP  180 (197)
Q Consensus       160 a~~~~~i~~l~~~i~~~~~~~  180 (197)
                      |.+|+|+.+.++|+.+.+...
T Consensus       160 a~~G~GL~egl~wl~~~~~~~  180 (181)
T KOG0070|consen  160 AISGEGLYEGLDWLSNNLKKR  180 (181)
T ss_pred             ccccccHHHHHHHHHHHHhcc
Confidence            999999999999999987654

>cd04155 Arl3 Arl3 subfamily

Probab=99.94  E-value=5.2e-26  Score=157.86  Aligned_cols=153  Identities=22%  Similarity=0.337  Sum_probs=112.5

Q ss_pred             CceeEEEEEcCCCCCHHHHHHHHhhCCCCCCCCCceeeeeeEEEEECCeEEEEEEEeCCCccccccccccCcCCCcEEEE
Q 036449            4 SRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFIL   83 (197)
Q Consensus         4 ~~~~~i~v~G~~~~GKstli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~   83 (197)
                      .+.++|+++|++|+|||||++++.+..+.. +.++.+.. ...+..++  ..+.+||+||+..+...+..+++.+|++++
T Consensus        12 ~~~~~v~i~G~~g~GKStLl~~l~~~~~~~-~~~t~g~~-~~~i~~~~--~~~~~~D~~G~~~~~~~~~~~~~~~~~ii~   87 (173)
T cd04155          12 SEEPRILILGLDNAGKTTILKQLASEDISH-ITPTQGFN-IKTVQSDG--FKLNVWDIGGQRAIRPYWRNYFENTDCLIY   87 (173)
T ss_pred             CCccEEEEEccCCCCHHHHHHHHhcCCCcc-cCCCCCcc-eEEEEECC--EEEEEEECCCCHHHHHHHHHHhcCCCEEEE
Confidence            457999999999999999999999876532 34444322 22334444  567899999998888888888999999999


Q ss_pred             EEeCCCchhHHHHHHHHHHHHhhhC-CCCCEEEEeeCCcccCCcccccCCCCCCcccHHHHHHHHHHhCCC-------ce
Q 036449           84 AFSLISKASYENVSKKWIPELKHYA-PGVPIILVGTKLDLRDDKQFFIDHPGAVPISTAQGEELRKLIGAP-------AY  155 (197)
Q Consensus        84 v~d~~~~~s~~~~~~~~~~~i~~~~-~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~  155 (197)
                      |+|+++..++......+...+.... .+.|+++++||+|+.....            .   ..+.+..+..       ++
T Consensus        88 v~D~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~------------~---~~i~~~l~~~~~~~~~~~~  152 (173)
T cd04155          88 VIDSADKKRLEEAGAELVELLEEEKLAGVPVLVFANKQDLATAAP------------A---EEIAEALNLHDLRDRTWHI  152 (173)
T ss_pred             EEeCCCHHHHHHHHHHHHHHHhChhhcCCCEEEEEECCCCccCCC------------H---HHHHHHcCCcccCCCeEEE
Confidence            9999999888877334444433322 4799999999999854321            1   1222222221       36


Q ss_pred             EEeccCCCCCHHHHHHHHHH
Q 036449          156 IECSSKTQQNVKAVFDAAIR  175 (197)
Q Consensus       156 ~~~sa~~~~~i~~l~~~i~~  175 (197)
                      +++||++|.|++++|++|.+
T Consensus       153 ~~~Sa~~~~gi~~~~~~l~~  172 (173)
T cd04155         153 QACSAKTGEGLQEGMNWVCK  172 (173)
T ss_pred             EEeECCCCCCHHHHHHHHhc
Confidence            89999999999999999975

Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation.

>KOG4252 consensus GTP-binding protein [Signal transduction mechanisms]

Probab=99.94  E-value=1.7e-28  Score=162.94  Aligned_cols=168  Identities=32%  Similarity=0.503  Sum_probs=151.2

Q ss_pred             CceeEEEEEcCCCCCHHHHHHHHhhCCCCCCCCCceeeee-eEEEEECCeEEEEEEEeCCCccccccccccCcCCCcEEE
Q 036449            4 SRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNF-SANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFI   82 (197)
Q Consensus         4 ~~~~~i~v~G~~~~GKstli~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i   82 (197)
                      ...+|++++|..++||||+++++..+-|...+..+++..+ ...+.+.+..+.+.+||++|+++|+.....+++++++.+
T Consensus        18 e~aiK~vivGng~VGKssmiqryCkgifTkdykktIgvdflerqi~v~~Edvr~mlWdtagqeEfDaItkAyyrgaqa~v   97 (246)
T KOG4252|consen   18 ERAIKFVIVGNGSVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIKVLIEDVRSMLWDTAGQEEFDAITKAYYRGAQASV   97 (246)
T ss_pred             hhhEEEEEECCCccchHHHHHHHhccccccccccccchhhhhHHHHhhHHHHHHHHHHhccchhHHHHHHHHhccccceE
Confidence            4569999999999999999999999999999998886554 455666667778889999999999999999999999999


Q ss_pred             EEEeCCCchhHHHHHHHHHHHHhhhCCCCCEEEEeeCCcccCCcccccCCCCCCcccHHHHHHHHHHhCCCceEEeccCC
Q 036449           83 LAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPISTAQGEELRKLIGAPAYIECSSKT  162 (197)
Q Consensus        83 ~v~d~~~~~s~~~~~~~~~~~i~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~  162 (197)
                      +||+.+|..||+.. ..|...+......+|.++|-||+|+.+...          ++..++..+++.++. .++.+|++.
T Consensus        98 LVFSTTDr~SFea~-~~w~~kv~~e~~~IPtV~vqNKIDlveds~----------~~~~evE~lak~l~~-RlyRtSvke  165 (246)
T KOG4252|consen   98 LVFSTTDRYSFEAT-LEWYNKVQKETERIPTVFVQNKIDLVEDSQ----------MDKGEVEGLAKKLHK-RLYRTSVKE  165 (246)
T ss_pred             EEEecccHHHHHHH-HHHHHHHHHHhccCCeEEeeccchhhHhhh----------cchHHHHHHHHHhhh-hhhhhhhhh
Confidence            99999999999998 899999999988999999999999988765          788899999999998 899999999


Q ss_pred             CCCHHHHHHHHHHHHcCCCch
Q 036449          163 QQNVKAVFDAAIRVVLQPPKT  183 (197)
Q Consensus       163 ~~~i~~l~~~i~~~~~~~~~~  183 (197)
                      .-|+..+|..|+..+.+...+
T Consensus       166 d~NV~~vF~YLaeK~~q~~kq  186 (246)
T KOG4252|consen  166 DFNVMHVFAYLAEKLTQQKKQ  186 (246)
T ss_pred             hhhhHHHHHHHHHHHHHHHHH
Confidence            999999999999887765443

>KOG0073 consensus GTP-binding ADP-ribosylation factor-like protein ARL2 [Intracellular trafficking, secretion, and vesicular transport; Cytoskeleton]

Probab=99.94  E-value=1.3e-25  Score=147.02  Aligned_cols=164  Identities=19%  Similarity=0.265  Sum_probs=126.1

Q ss_pred             CceeEEEEEcCCCCCHHHHHHHHhhCCCCCCCCCceeeeeeEEEEECCeEEEEEEEeCCCccccccccccCcCCCcEEEE
Q 036449            4 SRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFIL   83 (197)
Q Consensus         4 ~~~~~i~v~G~~~~GKstli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~   83 (197)
                      .+.++|+++|..|+||||++++|.+.. .+...||.+... .+..+++  +.+++||.+||..+++.|..|+...|++|+
T Consensus        14 erE~riLiLGLdNsGKTti~~kl~~~~-~~~i~pt~gf~I-ktl~~~~--~~L~iwDvGGq~~lr~~W~nYfestdglIw   89 (185)
T KOG0073|consen   14 EREVRILILGLDNSGKTTIVKKLLGED-TDTISPTLGFQI-KTLEYKG--YTLNIWDVGGQKTLRSYWKNYFESTDGLIW   89 (185)
T ss_pred             hheeEEEEEecCCCCchhHHHHhcCCC-ccccCCccceee-EEEEecc--eEEEEEEcCCcchhHHHHHHhhhccCeEEE
Confidence            468999999999999999999999876 333455554332 2333444  889999999999999999999999999999


Q ss_pred             EEeCCCchhHHHHHHHHHHHHhhhC-CCCCEEEEeeCCcccCCcccccCCCCCCcccH-HHHHHHHHHhCCCceEEeccC
Q 036449           84 AFSLISKASYENVSKKWIPELKHYA-PGVPIILVGTKLDLRDDKQFFIDHPGAVPIST-AQGEELRKLIGAPAYIECSSK  161 (197)
Q Consensus        84 v~d~~~~~s~~~~~~~~~~~i~~~~-~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~sa~  161 (197)
                      |+|.+|+..+++....+...+.... .+.|+++++||.|+...-.       ...+.. .....+++.... +.+.||+.
T Consensus        90 vvDssD~~r~~e~~~~L~~lL~eerlaG~~~Lvlank~dl~~~l~-------~~~i~~~~~L~~l~ks~~~-~l~~cs~~  161 (185)
T KOG0073|consen   90 VVDSSDRMRMQECKQELTELLVEERLAGAPLLVLANKQDLPGALS-------LEEISKALDLEELAKSHHW-RLVKCSAV  161 (185)
T ss_pred             EEECchHHHHHHHHHHHHHHHhhhhhcCCceEEEEecCcCccccC-------HHHHHHhhCHHHhccccCc-eEEEEecc
Confidence            9999999999987566655555444 6899999999999974321       000111 223445555566 89999999


Q ss_pred             CCCCHHHHHHHHHHHHcC
Q 036449          162 TQQNVKAVFDAAIRVVLQ  179 (197)
Q Consensus       162 ~~~~i~~l~~~i~~~~~~  179 (197)
                      +|+++.+-++|+...+..
T Consensus       162 tge~l~~gidWL~~~l~~  179 (185)
T KOG0073|consen  162 TGEDLLEGIDWLCDDLMS  179 (185)
T ss_pred             ccccHHHHHHHHHHHHHH
Confidence            999999999999987765

>COG1100 GTPase SAR1 and related small G proteins [General function prediction only]

Probab=99.94  E-value=3e-25  Score=159.66  Aligned_cols=180  Identities=34%  Similarity=0.544  Sum_probs=138.6

Q ss_pred             ceeEEEEEcCCCCCHHHHHHHHhhCCCCCCCCCceeeeeeEEEE-ECCeEEEEEEEeCCCccccccccccCcCCCcEEEE
Q 036449            5 RFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVV-VNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFIL   83 (197)
Q Consensus         5 ~~~~i~v~G~~~~GKstli~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~   83 (197)
                      ..+||+++|++|+|||||++++..+.+...+.++.+..+..... ..+..+.+.+||++|+++++.++..+..+++++++
T Consensus         4 ~~~kivv~G~~g~GKTtl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~Dt~gq~~~~~~~~~y~~~~~~~l~   83 (219)
T COG1100           4 KEFKIVVLGDGGVGKTTLLNRLVGDEFPEGYPPTIGNLDPAKTIEPYRRNIKLQLWDTAGQEEYRSLRPEYYRGANGILI   83 (219)
T ss_pred             ceEEEEEEcCCCccHHHHHHHHhcCcCcccCCCceeeeeEEEEEEeCCCEEEEEeecCCCHHHHHHHHHHHhcCCCEEEE
Confidence            34899999999999999999999999999999998766654443 34447889999999999999999999999999999


Q ss_pred             EEeCCCchhHHHHHHHHHHHHhhhC-CCCCEEEEeeCCcccCCcccccCCCCC--CcccHHHHHHHHHHh--CCCceEEe
Q 036449           84 AFSLISKASYENVSKKWIPELKHYA-PGVPIILVGTKLDLRDDKQFFIDHPGA--VPISTAQGEELRKLI--GAPAYIEC  158 (197)
Q Consensus        84 v~d~~~~~s~~~~~~~~~~~i~~~~-~~~~~ivv~nK~D~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~--~~~~~~~~  158 (197)
                      +||.++..++.+....|...+.... .+.|+++++||+|+.........-...  .....+.........  ....++++
T Consensus        84 ~~d~~~~~~~~~~~~~~~~~l~~~~~~~~~iilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  163 (219)
T COG1100          84 VYDSTLRESSDELTEEWLEELRELAPDDVPILLVGNKIDLFDEQSSSEEILNQLNREVVLLVLAPKAVLPEVANPALLET  163 (219)
T ss_pred             EEecccchhhhHHHHHHHHHHHHhCCCCceEEEEecccccccchhHHHHHHhhhhcCcchhhhHhHHhhhhhcccceeEe
Confidence            9999998888777799999999887 479999999999998764211000000  112222222222222  22248999


Q ss_pred             ccC--CCCCHHHHHHHHHHHHcCCCchh
Q 036449          159 SSK--TQQNVKAVFDAAIRVVLQPPKTK  184 (197)
Q Consensus       159 sa~--~~~~i~~l~~~i~~~~~~~~~~~  184 (197)
                      |++  ++.++.++|..+.+.+.......
T Consensus       164 s~~~~~~~~v~~~~~~~~~~~~~~~~~~  191 (219)
T COG1100         164 SAKSLTGPNVNELFKELLRKLLEEIEKL  191 (219)
T ss_pred             ecccCCCcCHHHHHHHHHHHHHHhhhhh
Confidence            999  99999999999999987654433

>TIGR00231 small_GTP small GTP-binding protein domain

Probab=99.94  E-value=3.4e-25  Score=151.02  Aligned_cols=157  Identities=36%  Similarity=0.525  Sum_probs=122.2

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHhhCCCCCCCCCceeeee-eEEEEECCeEEEEEEEeCCCccccccccccCcCCCcEEEEE
Q 036449            6 FIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNF-SANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILA   84 (197)
Q Consensus         6 ~~~i~v~G~~~~GKstli~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v   84 (197)
                      .+||+++|.+|+|||||++++....+...+.++....+ ...+..++..+.+.+||+||+..+...+.....+++.++.+
T Consensus         1 ~~ki~~~G~~~~GKstl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~~   80 (161)
T TIGR00231         1 EIKIVIVGDPNVGKSTLLNRLLGNKFITEYKPGTTRNYVTTVIEEDGKTYKFNLLDTAGQEDYRAIRRLYYRAVESSLRV   80 (161)
T ss_pred             CeEEEEECCCCCCHHHHHHHHhCCCCcCcCCCCceeeeeEEEEEECCEEEEEEEEECCCcccchHHHHHHHhhhhEEEEE
Confidence            37999999999999999999998887666666664444 33456677668899999999999988888888899999999


Q ss_pred             EeCCCc-hhHHHHHHHHHHHHhhhCC-CCCEEEEeeCCcccCCcccccCCCCCCcccHHHHHHHHHHhCCCceEEeccCC
Q 036449           85 FSLISK-ASYENVSKKWIPELKHYAP-GVPIILVGTKLDLRDDKQFFIDHPGAVPISTAQGEELRKLIGAPAYIECSSKT  162 (197)
Q Consensus        85 ~d~~~~-~s~~~~~~~~~~~i~~~~~-~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~  162 (197)
                      +|+... .++......|...+..... +.|+++++||+|+....           ........+ ...+..+++++||++
T Consensus        81 ~d~~~~v~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~-----------~~~~~~~~~-~~~~~~~~~~~sa~~  148 (161)
T TIGR00231        81 FDIVILVLDVEEILEKQTKEIIHHAESNVPIILVGNKIDLRDAK-----------LKTHVAFLF-AKLNGEPIIPLSAET  148 (161)
T ss_pred             EEEeeeehhhhhHhHHHHHHHHHhcccCCcEEEEEEcccCCcch-----------hhHHHHHHH-hhccCCceEEeecCC
Confidence            999887 7777664466666666554 89999999999996542           122333333 334444799999999


Q ss_pred             CCCHHHHHHHHH
Q 036449          163 QQNVKAVFDAAI  174 (197)
Q Consensus       163 ~~~i~~l~~~i~  174 (197)
                      +.|+.++|++|.
T Consensus       149 ~~gv~~~~~~l~  160 (161)
T TIGR00231       149 GKNIDSAFKIVE  160 (161)
T ss_pred             CCCHHHHHHHhh
Confidence            999999999863

This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model.

>cd01898 Obg Obg subfamily

Probab=99.94  E-value=2.1e-25  Score=154.37  Aligned_cols=156  Identities=21%  Similarity=0.205  Sum_probs=107.5

Q ss_pred             EEEEEcCCCCCHHHHHHHHhhCCCC-CCCCCceeeeeeEEEEECCeEEEEEEEeCCCccc----cccccccC---cCCCc
Q 036449            8 KCVTVGDGAVGKTCLLISYTSNTFP-TDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQED----YNRLRPLS---YRGAD   79 (197)
Q Consensus         8 ~i~v~G~~~~GKstli~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~----~~~~~~~~---~~~~~   79 (197)
                      +|+++|.+|+|||||++++.+.... ..+..++.......+.+++ ...+.+|||||+.+    +..+...+   +..+|
T Consensus         2 ~v~ivG~~~~GKStl~~~l~~~~~~v~~~~~~t~~~~~~~~~~~~-~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~d   80 (170)
T cd01898           2 DVGLVGLPNAGKSTLLSAISNAKPKIADYPFTTLVPNLGVVRVDD-GRSFVVADIPGLIEGASEGKGLGHRFLRHIERTR   80 (170)
T ss_pred             CeEEECCCCCCHHHHHHHHhcCCccccCCCccccCCcceEEEcCC-CCeEEEEecCcccCcccccCCchHHHHHHHHhCC
Confidence            6899999999999999999865432 1112222111111223333 24688999999642    11222222   34599


Q ss_pred             EEEEEEeCCCc-hhHHHHHHHHHHHHhhhC---CCCCEEEEeeCCcccCCcccccCCCCCCcccHHHHHHHHHHh-CCCc
Q 036449           80 VFILAFSLISK-ASYENVSKKWIPELKHYA---PGVPIILVGTKLDLRDDKQFFIDHPGAVPISTAQGEELRKLI-GAPA  154 (197)
Q Consensus        80 ~~i~v~d~~~~-~s~~~~~~~~~~~i~~~~---~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~  154 (197)
                      ++++|+|++++ ++++.+ ..|.+.+....   .+.|+++|+||+|+.+...          . .+....+.... +. +
T Consensus        81 ~vi~v~D~~~~~~~~~~~-~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~~----------~-~~~~~~~~~~~~~~-~  147 (170)
T cd01898          81 LLLHVIDLSGDDDPVEDY-KTIRNELELYNPELLEKPRIVVLNKIDLLDEEE----------L-FELLKELLKELWGK-P  147 (170)
T ss_pred             EEEEEEecCCCCCHHHHH-HHHHHHHHHhCccccccccEEEEEchhcCCchh----------h-HHHHHHHHhhCCCC-C
Confidence            99999999999 788887 68887776654   3689999999999965432          2 23334444443 44 7


Q ss_pred             eEEeccCCCCCHHHHHHHHHHHH
Q 036449          155 YIECSSKTQQNVKAVFDAAIRVV  177 (197)
Q Consensus       155 ~~~~sa~~~~~i~~l~~~i~~~~  177 (197)
                      ++++||+++.|++++|+++.+.+
T Consensus       148 ~~~~Sa~~~~gi~~l~~~i~~~~  170 (170)
T cd01898         148 VFPISALTGEGLDELLRKLAELL  170 (170)
T ss_pred             EEEEecCCCCCHHHHHHHHHhhC
Confidence            99999999999999999998753

The Obg nucleotide binding protein subfamily has been implicated in stress response, chromosome partitioning, replication initiation, mycelium development, and sporulation. Obg proteins are among a large group of GTP binding proteins conserved from bacteria to humans. The E. coli homolog, ObgE is believed to function in ribosomal biogenesis. Members of the subfamily contain two equally and highly conserved domains, a C-terminal GTP binding domain and an N-terminal glycine-rich domain.

>TIGR02528 EutP ethanolamine utilization protein, EutP

Probab=99.94  E-value=5.8e-26  Score=152.73  Aligned_cols=135  Identities=27%  Similarity=0.289  Sum_probs=99.7

Q ss_pred             EEEEEcCCCCCHHHHHHHHhhCCCCCCCCCceeeeeeEEEEECCeEEEEEEEeCCCcc-----ccccccccCcCCCcEEE
Q 036449            8 KCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQE-----DYNRLRPLSYRGADVFI   82 (197)
Q Consensus         8 ~i~v~G~~~~GKstli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~-----~~~~~~~~~~~~~~~~i   82 (197)
                      ||+++|.+|||||||++++.+..+.  +.+|..      ..+..     .+||+||+.     .+..+.. .++++|+++
T Consensus         2 kv~liG~~~vGKSsL~~~l~~~~~~--~~~t~~------~~~~~-----~~iDt~G~~~~~~~~~~~~~~-~~~~ad~vi   67 (142)
T TIGR02528         2 RIMFIGSVGCGKTTLTQALQGEEIL--YKKTQA------VEYND-----GAIDTPGEYVENRRLYSALIV-TAADADVIA   67 (142)
T ss_pred             eEEEECCCCCCHHHHHHHHcCCccc--ccccee------EEEcC-----eeecCchhhhhhHHHHHHHHH-HhhcCCEEE
Confidence            7999999999999999999987652  233321      11111     589999973     2333333 478999999


Q ss_pred             EEEeCCCchhHHHHHHHHHHHHhhhCCCCCEEEEeeCCcccCCcccccCCCCCCcccHHHHHHHHHHhCCCceEEeccCC
Q 036449           83 LAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPISTAQGEELRKLIGAPAYIECSSKT  162 (197)
Q Consensus        83 ~v~d~~~~~s~~~~~~~~~~~i~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~  162 (197)
                      +|||++++.++...  .|...+     ..|+++|+||+|+.+..           ...+++.++++..+..+++++||++
T Consensus        68 lv~d~~~~~s~~~~--~~~~~~-----~~p~ilv~NK~Dl~~~~-----------~~~~~~~~~~~~~~~~~~~~~Sa~~  129 (142)
T TIGR02528        68 LVQSATDPESRFPP--GFASIF-----VKPVIGLVTKIDLAEAD-----------VDIERAKELLETAGAEPIFEISSVD  129 (142)
T ss_pred             EEecCCCCCcCCCh--hHHHhc-----cCCeEEEEEeeccCCcc-----------cCHHHHHHHHHHcCCCcEEEEecCC
Confidence            99999999987653  444322     24999999999986422           3455667777777765799999999


Q ss_pred             CCCHHHHHHHHH
Q 036449          163 QQNVKAVFDAAI  174 (197)
Q Consensus       163 ~~~i~~l~~~i~  174 (197)
                      +.|++++|+++.
T Consensus       130 ~~gi~~l~~~l~  141 (142)
T TIGR02528       130 EQGLEALVDYLN  141 (142)
T ss_pred             CCCHHHHHHHHh
Confidence            999999999874

This protein is found within operons which code for polyhedral organelles containing the enzyme ethanolamine ammonia lyase. The function of this gene is unknown, although the presence of an N-terminal GxxGxGK motif implies a GTP-binding site.

>cd04171 SelB SelB subfamily

Probab=99.93  E-value=8.2e-25  Score=150.40  Aligned_cols=153  Identities=20%  Similarity=0.166  Sum_probs=100.6

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhhCC---CCCCCCCce-eeeeeEEEEECCeEEEEEEEeCCCccccccccccCcCCCcEEE
Q 036449            7 IKCVTVGDGAVGKTCLLISYTSNT---FPTDYVPTV-FDNFSANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFI   82 (197)
Q Consensus         7 ~~i~v~G~~~~GKstli~~~~~~~---~~~~~~~~~-~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i   82 (197)
                      +.|+++|.+|+|||||++++.+..   +..++.++. .+.......+.+ ...+++|||||+++|......++.++|+++
T Consensus         1 ~~i~i~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~~~DtpG~~~~~~~~~~~~~~ad~ii   79 (164)
T cd04171           1 MIIGTAGHIDHGKTTLIKALTGIETDRLPEEKKRGITIDLGFAYLDLPS-GKRLGFIDVPGHEKFIKNMLAGAGGIDLVL   79 (164)
T ss_pred             CEEEEEecCCCCHHHHHHHHhCcccccchhhhccCceEEeeeEEEEecC-CcEEEEEECCChHHHHHHHHhhhhcCCEEE
Confidence            468999999999999999998632   222222222 111112233331 357889999999988766666788999999


Q ss_pred             EEEeCCCc---hhHHHHHHHHHHHHhhhCCCCCEEEEeeCCcccCCcccccCCCCCCcccHHHHHHHHHH---hCCCceE
Q 036449           83 LAFSLISK---ASYENVSKKWIPELKHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPISTAQGEELRKL---IGAPAYI  156 (197)
Q Consensus        83 ~v~d~~~~---~s~~~~~~~~~~~i~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~  156 (197)
                      +|+|+++.   ++.+.+     ..+... ...|+++++||+|+.+...        ......+..+..+.   .+. +++
T Consensus        80 ~V~d~~~~~~~~~~~~~-----~~~~~~-~~~~~ilv~NK~Dl~~~~~--------~~~~~~~~~~~~~~~~~~~~-~~~  144 (164)
T cd04171          80 LVVAADEGIMPQTREHL-----EILELL-GIKRGLVVLTKADLVDEDW--------LELVEEEIRELLAGTFLADA-PIF  144 (164)
T ss_pred             EEEECCCCccHhHHHHH-----HHHHHh-CCCcEEEEEECccccCHHH--------HHHHHHHHHHHHHhcCcCCC-cEE
Confidence            99999873   333222     222222 1249999999999965321        00112233333333   234 899


Q ss_pred             EeccCCCCCHHHHHHHHHH
Q 036449          157 ECSSKTQQNVKAVFDAAIR  175 (197)
Q Consensus       157 ~~sa~~~~~i~~l~~~i~~  175 (197)
                      ++||+++.|++++++.+.+
T Consensus       145 ~~Sa~~~~~v~~l~~~l~~  163 (164)
T cd04171         145 PVSAVTGEGIEELKEYLDE  163 (164)
T ss_pred             EEeCCCCcCHHHHHHHHhh
Confidence            9999999999999998764

SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec, and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and eukaryo

>cd01878 HflX HflX subfamily

Probab=99.93  E-value=8.2e-25  Score=155.72  Aligned_cols=155  Identities=21%  Similarity=0.212  Sum_probs=108.6

Q ss_pred             CceeEEEEEcCCCCCHHHHHHHHhhCCCCC-CCCCceeeeeeEEEEECCeEEEEEEEeCCCcccc---------cccccc
Q 036449            4 SRFIKCVTVGDGAVGKTCLLISYTSNTFPT-DYVPTVFDNFSANVVVNGSTVNLGLWDTAGQEDY---------NRLRPL   73 (197)
Q Consensus         4 ~~~~~i~v~G~~~~GKstli~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~---------~~~~~~   73 (197)
                      +..++|+++|++|||||||++++.+..+.. ....++.......+.+++. ..+.+||+||..+.         ...+ .
T Consensus        39 ~~~~~I~iiG~~g~GKStLl~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~-~~~~i~Dt~G~~~~~~~~~~~~~~~~~-~  116 (204)
T cd01878          39 SGIPTVALVGYTNAGKSTLFNALTGADVYAEDQLFATLDPTTRRLRLPDG-REVLLTDTVGFIRDLPHQLVEAFRSTL-E  116 (204)
T ss_pred             cCCCeEEEECCCCCCHHHHHHHHhcchhccCCccceeccceeEEEEecCC-ceEEEeCCCccccCCCHHHHHHHHHHH-H
Confidence            446899999999999999999999876432 2222222222223334332 36789999997321         1111 1


Q ss_pred             CcCCCcEEEEEEeCCCchhHHHHHHHHHHHHhhhC-CCCCEEEEeeCCcccCCcccccCCCCCCcccHHHHHHHHHHhCC
Q 036449           74 SYRGADVFILAFSLISKASYENVSKKWIPELKHYA-PGVPIILVGTKLDLRDDKQFFIDHPGAVPISTAQGEELRKLIGA  152 (197)
Q Consensus        74 ~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~i~~~~-~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  152 (197)
                      .+..+|++++|+|++++.++... ..|...+.... .+.|+++|+||+|+.+...          .     .......+.
T Consensus       117 ~~~~~d~ii~v~D~~~~~~~~~~-~~~~~~l~~~~~~~~~viiV~NK~Dl~~~~~----------~-----~~~~~~~~~  180 (204)
T cd01878         117 EVAEADLLLHVVDASDPDYEEQI-ETVEKVLKELGAEDIPMILVLNKIDLLDDEE----------L-----EERLEAGRP  180 (204)
T ss_pred             HHhcCCeEEEEEECCCCChhhHH-HHHHHHHHHcCcCCCCEEEEEEccccCChHH----------H-----HHHhhcCCC
Confidence            25679999999999999888776 56667666544 4789999999999965432          1     133344444


Q ss_pred             CceEEeccCCCCCHHHHHHHHHHHH
Q 036449          153 PAYIECSSKTQQNVKAVFDAAIRVV  177 (197)
Q Consensus       153 ~~~~~~sa~~~~~i~~l~~~i~~~~  177 (197)
                       +++++||+++.|+++++++|.+.+
T Consensus       181 -~~~~~Sa~~~~gi~~l~~~L~~~~  204 (204)
T cd01878         181 -DAVFISAKTGEGLDELLEAIEELL  204 (204)
T ss_pred             -ceEEEEcCCCCCHHHHHHHHHhhC
Confidence             799999999999999999998754

A distinct conserved domain with a glycine-rich segment N-terminal of the GTPase domain characterizes the HflX subfamily. The E. coli HflX has been implicated in the control of the lambda cII repressor proteolysis, but the actual biological functions of these GTPases remain unclear. HflX is widespread, but not universally represented in all three superkingdoms.

>PRK12299 obgE GTPase CgtA; Reviewed

Probab=99.93  E-value=1.3e-24  Score=163.78  Aligned_cols=161  Identities=18%  Similarity=0.178  Sum_probs=115.7

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhhCCC-CCCCCCceeeeeeEEEEECCeEEEEEEEeCCCccc-------cccccccCcCCC
Q 036449            7 IKCVTVGDGAVGKTCLLISYTSNTF-PTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQED-------YNRLRPLSYRGA   78 (197)
Q Consensus         7 ~~i~v~G~~~~GKstli~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~-------~~~~~~~~~~~~   78 (197)
                      -.|.++|.++||||||++++..... ...++.|+.......+.+. ....+.+||+||..+       +...+...++.+
T Consensus       159 adVglVG~PNaGKSTLln~ls~a~~~va~ypfTT~~p~~G~v~~~-~~~~~~i~D~PGli~ga~~~~gLg~~flrhie~a  237 (335)
T PRK12299        159 ADVGLVGLPNAGKSTLISAVSAAKPKIADYPFTTLHPNLGVVRVD-DYKSFVIADIPGLIEGASEGAGLGHRFLKHIERT  237 (335)
T ss_pred             CCEEEEcCCCCCHHHHHHHHHcCCCccCCCCCceeCceEEEEEeC-CCcEEEEEeCCCccCCCCccccHHHHHHHHhhhc
Confidence            4599999999999999999987543 3445555543333334442 124578999999632       111222345679


Q ss_pred             cEEEEEEeCCCchhHHHHHHHHHHHHhhhC---CCCCEEEEeeCCcccCCcccccCCCCCCcccHHHHHHHHHHhCCCce
Q 036449           79 DVFILAFSLISKASYENVSKKWIPELKHYA---PGVPIILVGTKLDLRDDKQFFIDHPGAVPISTAQGEELRKLIGAPAY  155 (197)
Q Consensus        79 ~~~i~v~d~~~~~s~~~~~~~~~~~i~~~~---~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  155 (197)
                      +++++|+|+++.++++.. ..|...+....   .+.|+++|+||+|+.+...          ...+....+....+. ++
T Consensus       238 ~vlI~ViD~s~~~s~e~~-~~~~~EL~~~~~~L~~kp~IIV~NKiDL~~~~~----------~~~~~~~~~~~~~~~-~i  305 (335)
T PRK12299        238 RLLLHLVDIEAVDPVEDY-KTIRNELEKYSPELADKPRILVLNKIDLLDEEE----------EREKRAALELAALGG-PV  305 (335)
T ss_pred             CEEEEEEcCCCCCCHHHH-HHHHHHHHHhhhhcccCCeEEEEECcccCCchh----------HHHHHHHHHHHhcCC-CE
Confidence            999999999988888887 78888887654   3789999999999965432          223334444455555 89


Q ss_pred             EEeccCCCCCHHHHHHHHHHHHcCC
Q 036449          156 IECSSKTQQNVKAVFDAAIRVVLQP  180 (197)
Q Consensus       156 ~~~sa~~~~~i~~l~~~i~~~~~~~  180 (197)
                      +++||+++.|+++++++|.+.+...
T Consensus       306 ~~iSAktg~GI~eL~~~L~~~l~~~  330 (335)
T PRK12299        306 FLISAVTGEGLDELLRALWELLEEA  330 (335)
T ss_pred             EEEEcCCCCCHHHHHHHHHHHHHhh
Confidence            9999999999999999999987653

>PRK15494 era GTPase Era; Provisional

Probab=99.93  E-value=2.3e-24  Score=163.50  Aligned_cols=162  Identities=16%  Similarity=0.240  Sum_probs=112.5

Q ss_pred             CCCCceeEEEEEcCCCCCHHHHHHHHhhCCCCC--CCCCceeeeeeEEEEECCeEEEEEEEeCCCccc-ccccc------
Q 036449            1 MSASRFIKCVTVGDGAVGKTCLLISYTSNTFPT--DYVPTVFDNFSANVVVNGSTVNLGLWDTAGQED-YNRLR------   71 (197)
Q Consensus         1 m~~~~~~~i~v~G~~~~GKstli~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~-~~~~~------   71 (197)
                      |++.+.++|+++|.+|||||||+++|.+..+..  ....|+.......+..++  .++.+|||||... +..+.      
T Consensus        47 ~~~~k~~kV~ivG~~nvGKSTLin~l~~~k~~ivs~k~~tTr~~~~~~~~~~~--~qi~~~DTpG~~~~~~~l~~~~~r~  124 (339)
T PRK15494         47 MSNQKTVSVCIIGRPNSGKSTLLNRIIGEKLSIVTPKVQTTRSIITGIITLKD--TQVILYDTPGIFEPKGSLEKAMVRC  124 (339)
T ss_pred             ccccceeEEEEEcCCCCCHHHHHHHHhCCceeeccCCCCCccCcEEEEEEeCC--eEEEEEECCCcCCCcccHHHHHHHH
Confidence            345677899999999999999999999887642  222333333444455555  4678999999843 22221      


Q ss_pred             -ccCcCCCcEEEEEEeCCCchhHHHHHHHHHHHHhhhCCCCCEEEEeeCCcccCCcccccCCCCCCcccHHHHHHHHHHh
Q 036449           72 -PLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPISTAQGEELRKLI  150 (197)
Q Consensus        72 -~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  150 (197)
                       ...+.++|++++|+|.++  ++......|+..+...  +.|.++|+||+|+...             ...++.++....
T Consensus       125 ~~~~l~~aDvil~VvD~~~--s~~~~~~~il~~l~~~--~~p~IlViNKiDl~~~-------------~~~~~~~~l~~~  187 (339)
T PRK15494        125 AWSSLHSADLVLLIIDSLK--SFDDITHNILDKLRSL--NIVPIFLLNKIDIESK-------------YLNDIKAFLTEN  187 (339)
T ss_pred             HHHHhhhCCEEEEEEECCC--CCCHHHHHHHHHHHhc--CCCEEEEEEhhcCccc-------------cHHHHHHHHHhc
Confidence             124678999999999765  3444434566666544  5688899999998532             123344444444


Q ss_pred             C-CCceEEeccCCCCCHHHHHHHHHHHHcCCC
Q 036449          151 G-APAYIECSSKTQQNVKAVFDAAIRVVLQPP  181 (197)
Q Consensus       151 ~-~~~~~~~sa~~~~~i~~l~~~i~~~~~~~~  181 (197)
                      + ...++++||++|.|++++|++|.+.+...+
T Consensus       188 ~~~~~i~~iSAktg~gv~eL~~~L~~~l~~~~  219 (339)
T PRK15494        188 HPDSLLFPISALSGKNIDGLLEYITSKAKISP  219 (339)
T ss_pred             CCCcEEEEEeccCccCHHHHHHHHHHhCCCCC
Confidence            3 237899999999999999999999887654

>cd01887 IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryotic initiation factor 5B) subfamily

Probab=99.93  E-value=3e-24  Score=148.19  Aligned_cols=158  Identities=18%  Similarity=0.201  Sum_probs=107.6

Q ss_pred             EEEEEcCCCCCHHHHHHHHhhCCCCCCCCCceeeee-eEEEEEC-CeEEEEEEEeCCCccccccccccCcCCCcEEEEEE
Q 036449            8 KCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNF-SANVVVN-GSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAF   85 (197)
Q Consensus         8 ~i~v~G~~~~GKstli~~~~~~~~~~~~~~~~~~~~-~~~~~~~-~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~   85 (197)
                      .|+++|.+|+|||||++++....+...+.++..... ......+ +....+.+|||||++.+...+...+..+|++++|+
T Consensus         2 ~i~iiG~~~~GKtsli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~iiDtpG~~~~~~~~~~~~~~~d~il~v~   81 (168)
T cd01887           2 VVTVMGHVDHGKTTLLDKIRKTNVAAGEAGGITQHIGAFEVPAEVLKIPGITFIDTPGHEAFTNMRARGASLTDIAILVV   81 (168)
T ss_pred             EEEEEecCCCCHHHHHHHHHhcccccccCCCeEEeeccEEEecccCCcceEEEEeCCCcHHHHHHHHHHHhhcCEEEEEE
Confidence            589999999999999999998877655433332222 1222222 13467889999999988888888889999999999


Q ss_pred             eCCCchhHHHHHHHHHHHHhhhCCCCCEEEEeeCCcccCCcccccCCCCCCcccHHHHHHHHH----Hh-CCCceEEecc
Q 036449           86 SLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPISTAQGEELRK----LI-GAPAYIECSS  160 (197)
Q Consensus        86 d~~~~~s~~~~~~~~~~~i~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~-~~~~~~~~sa  160 (197)
                      |+++....+..  ..+..+..  .+.|+++|+||+|+.....         .........+..    .. ...+++++||
T Consensus        82 d~~~~~~~~~~--~~~~~~~~--~~~p~ivv~NK~Dl~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa  148 (168)
T cd01887          82 AADDGVMPQTI--EAIKLAKA--ANVPFIVALNKIDKPNANP---------ERVKNELSELGLQGEDEWGGDVQIVPTSA  148 (168)
T ss_pred             ECCCCccHHHH--HHHHHHHH--cCCCEEEEEEceecccccH---------HHHHHHHHHhhccccccccCcCcEEEeec
Confidence            99986432222  22233333  3789999999999864321         000111111111    11 1237999999


Q ss_pred             CCCCCHHHHHHHHHHHHc
Q 036449          161 KTQQNVKAVFDAAIRVVL  178 (197)
Q Consensus       161 ~~~~~i~~l~~~i~~~~~  178 (197)
                      +++.|+++++++|.+...
T Consensus       149 ~~~~gi~~l~~~l~~~~~  166 (168)
T cd01887         149 KTGEGIDDLLEAILLLAE  166 (168)
T ss_pred             ccCCCHHHHHHHHHHhhh
Confidence            999999999999988654

IF2/eIF5B contribute to ribosomal subunit joining and function as GTPases that are maximally activated by the presence of both ribosomal subunits. As seen in other GTPases, IF2/IF5B undergoes conformational changes between its GTP- and GDP-bound states. Eukaryotic IF2/eIF5Bs possess three characteristic segments, including a divergent N-terminal region followed by conserved central and C-terminal segments. This core region is conserved among all known eukaryotic and archaeal IF2/eIF5Bs and eubacterial IF2s.

>TIGR00436 era GTP-binding protein Era

Probab=99.92  E-value=3.9e-24  Score=158.08  Aligned_cols=156  Identities=15%  Similarity=0.119  Sum_probs=110.6

Q ss_pred             EEEEEcCCCCCHHHHHHHHhhCCCC--CCCCCceeeeeeEEEEECCeEEEEEEEeCCCccccc-c-------ccccCcCC
Q 036449            8 KCVTVGDGAVGKTCLLISYTSNTFP--TDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQEDYN-R-------LRPLSYRG   77 (197)
Q Consensus         8 ~i~v~G~~~~GKstli~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~-~-------~~~~~~~~   77 (197)
                      +|+++|.+|||||||+|++.+..+.  ...+.|+..........++  .++.+|||||..... .       .....+..
T Consensus         2 ~V~liG~pnvGKSTLln~L~~~~~~~vs~~~~TTr~~i~~i~~~~~--~qii~vDTPG~~~~~~~l~~~~~~~~~~~l~~   79 (270)
T TIGR00436         2 FVAILGRPNVGKSTLLNQLHGQKISITSPKAQTTRNRISGIHTTGA--SQIIFIDTPGFHEKKHSLNRLMMKEARSAIGG   79 (270)
T ss_pred             EEEEECCCCCCHHHHHHHHhCCcEeecCCCCCcccCcEEEEEEcCC--cEEEEEECcCCCCCcchHHHHHHHHHHHHHhh
Confidence            6899999999999999999987653  3334455443332222333  468899999975421 1       12345788


Q ss_pred             CcEEEEEEeCCCchhHHHHHHHHHHHHhhhCCCCCEEEEeeCCcccCCcccccCCCCCCcccHHHHHHHHHHhCCCceEE
Q 036449           78 ADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPISTAQGEELRKLIGAPAYIE  157 (197)
Q Consensus        78 ~~~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  157 (197)
                      +|++++|+|+++..+.+   ..+...+...  +.|+++|+||+|+.+..           ...+....+....+..++++
T Consensus        80 aDvvl~VvD~~~~~~~~---~~i~~~l~~~--~~p~ilV~NK~Dl~~~~-----------~~~~~~~~~~~~~~~~~v~~  143 (270)
T TIGR00436        80 VDLILFVVDSDQWNGDG---EFVLTKLQNL--KRPVVLTRNKLDNKFKD-----------KLLPLIDKYAILEDFKDIVP  143 (270)
T ss_pred             CCEEEEEEECCCCCchH---HHHHHHHHhc--CCCEEEEEECeeCCCHH-----------HHHHHHHHHHhhcCCCceEE
Confidence            99999999999876654   3444555443  78999999999996422           12234445555555547999


Q ss_pred             eccCCCCCHHHHHHHHHHHHcCCC
Q 036449          158 CSSKTQQNVKAVFDAAIRVVLQPP  181 (197)
Q Consensus       158 ~sa~~~~~i~~l~~~i~~~~~~~~  181 (197)
                      +||++|.|+++++++|.+.+...+
T Consensus       144 iSA~~g~gi~~L~~~l~~~l~~~~  167 (270)
T TIGR00436       144 ISALTGDNTSFLAAFIEVHLPEGP  167 (270)
T ss_pred             EecCCCCCHHHHHHHHHHhCCCCC
Confidence            999999999999999999886654

Era is an essential GTPase in Escherichia coli and many other bacteria. It plays a role in ribosome biogenesis. Few bacteria lack this protein.

>cd00882 Ras_like_GTPase Ras-like GTPase superfamily

Probab=99.92  E-value=8.5e-24  Score=143.00  Aligned_cols=152  Identities=42%  Similarity=0.757  Sum_probs=115.4

Q ss_pred             EEcCCCCCHHHHHHHHhhCCC-CCCCCCceeeeeeEEEEECCeEEEEEEEeCCCccccccccccCcCCCcEEEEEEeCCC
Q 036449           11 TVGDGAVGKTCLLISYTSNTF-PTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLIS   89 (197)
Q Consensus        11 v~G~~~~GKstli~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~   89 (197)
                      ++|++|+|||||++++..... .....++.................+.+||+||+..+...+...+..+|++++|+|+++
T Consensus         1 iiG~~~~GKStl~~~l~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~   80 (157)
T cd00882           1 VVGDSGVGKTSLLNRLLGGEFVPEEYETTIIDFYSKTIEVDGKKVKLQIWDTAGQERFRSLRRLYYRGADGIILVYDVTD   80 (157)
T ss_pred             CCCcCCCcHHHHHHHHHhCCcCCcccccchhheeeEEEEECCEEEEEEEEecCChHHHHhHHHHHhcCCCEEEEEEECcC
Confidence            589999999999999998877 4555555544445555555667889999999998888777778899999999999999


Q ss_pred             chhHHHHHHHH--HHHHhhhCCCCCEEEEeeCCcccCCcccccCCCCCCcccHHH-HHHHHHHhCCCceEEeccCCCCCH
Q 036449           90 KASYENVSKKW--IPELKHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPISTAQ-GEELRKLIGAPAYIECSSKTQQNV  166 (197)
Q Consensus        90 ~~s~~~~~~~~--~~~i~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~sa~~~~~i  166 (197)
                      +.+.... ..|  .........+.|+++++||+|+.....          ..... ........+ .+++++|+.++.|+
T Consensus        81 ~~~~~~~-~~~~~~~~~~~~~~~~~~ivv~nk~D~~~~~~----------~~~~~~~~~~~~~~~-~~~~~~s~~~~~~i  148 (157)
T cd00882          81 RESFENV-KEWLLLILINKEGENIPIILVGNKIDLPEERV----------VSEEELAEQLAKELG-VPYFETSAKTGENV  148 (157)
T ss_pred             HHHHHHH-HHHHHHHHHhhccCCCcEEEEEeccccccccc----------hHHHHHHHHHHhhcC-CcEEEEecCCCCCh
Confidence            9988887 444  222333336899999999999976432          11121 233444444 48999999999999


Q ss_pred             HHHHHHHH
Q 036449          167 KAVFDAAI  174 (197)
Q Consensus       167 ~~l~~~i~  174 (197)
                      .+++++|.
T Consensus       149 ~~~~~~l~  156 (157)
T cd00882         149 EELFEELA  156 (157)
T ss_pred             HHHHHHHh
Confidence            99999986

The Ras-like superfamily of small GTPases consists of several families with an extremely high degree of structural and functional similarity. The Ras superfamily is divided into at least four families in eukaryotes: the Ras, Rho, Rab, and Sar1/Arf families. This superfamily also includes proteins like the GTP translation factors, Era-like GTPases, and G-alpha chain of the heterotrimeric G proteins. Members of the Ras superfamily regulate a wide variety of cellular functions: the Ras family regulates gene expression, the Rho family regulates cytoskeletal reorganization and gene expression, the Rab and Sar1/Arf families regulate vesicle trafficking, and the Ran family regulates nucleocytoplasmic transport and microtubule organization. The GTP translation factor family regulate initiation, elongation, termination, and release in translation, and the Era-like GTPase family regulates cell division, sporulation, and DNA replication. Memb

>KOG3883 consensus Ras family small GTPase [Signal transduction mechanisms]

Probab=99.92  E-value=1.9e-23  Score=135.44  Aligned_cols=167  Identities=24%  Similarity=0.336  Sum_probs=141.6

Q ss_pred             ceeEEEEEcCCCCCHHHHHHHHhhCCC--CCCCCCceeeeeeEEEEEC-CeEEEEEEEeCCCcccc-ccccccCcCCCcE
Q 036449            5 RFIKCVTVGDGAVGKTCLLISYTSNTF--PTDYVPTVFDNFSANVVVN-GSTVNLGLWDTAGQEDY-NRLRPLSYRGADV   80 (197)
Q Consensus         5 ~~~~i~v~G~~~~GKstli~~~~~~~~--~~~~~~~~~~~~~~~~~~~-~~~~~~~i~D~~G~~~~-~~~~~~~~~~~~~   80 (197)
                      +..||+|+|..++|||+++..+..+..  ..++.+|..+.|...+..+ +-.-.+.++||.|.... ..+-.+++.-+|+
T Consensus         8 k~~kVvVcG~k~VGKTaileQl~yg~~~~~~e~~pTiEDiY~~svet~rgarE~l~lyDTaGlq~~~~eLprhy~q~aDa   87 (198)
T KOG3883|consen    8 KVCKVVVCGMKSVGKTAILEQLLYGNHVPGTELHPTIEDIYVASVETDRGAREQLRLYDTAGLQGGQQELPRHYFQFADA   87 (198)
T ss_pred             cceEEEEECCccccHHHHHHHHHhccCCCCCccccchhhheeEeeecCCChhheEEEeecccccCchhhhhHhHhccCce
Confidence            568999999999999999999886543  4567888888887776654 44456889999998777 4566778999999


Q ss_pred             EEEEEeCCCchhHHHHHHHHHHHHhhhC--CCCCEEEEeeCCcccCCcccccCCCCCCcccHHHHHHHHHHhCCCceEEe
Q 036449           81 FILAFSLISKASYENVSKKWIPELKHYA--PGVPIILVGTKLDLRDDKQFFIDHPGAVPISTAQGEELRKLIGAPAYIEC  158 (197)
Q Consensus        81 ~i~v~d~~~~~s~~~~~~~~~~~i~~~~--~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  158 (197)
                      +++||+..|++||+.+ ..+...|....  ..+|+++++||+|+.+.+.          ++.+.++.|++.-.. ..+++
T Consensus        88 fVLVYs~~d~eSf~rv-~llKk~Idk~KdKKEvpiVVLaN~rdr~~p~~----------vd~d~A~~Wa~rEkv-kl~eV  155 (198)
T KOG3883|consen   88 FVLVYSPMDPESFQRV-ELLKKEIDKHKDKKEVPIVVLANKRDRAEPRE----------VDMDVAQIWAKREKV-KLWEV  155 (198)
T ss_pred             EEEEecCCCHHHHHHH-HHHHHHHhhccccccccEEEEechhhcccchh----------cCHHHHHHHHhhhhe-eEEEE
Confidence            9999999999999998 67777777655  4799999999999977654          888999999999988 89999


Q ss_pred             ccCCCCCHHHHHHHHHHHHcCCCch
Q 036449          159 SSKTQQNVKAVFDAAIRVVLQPPKT  183 (197)
Q Consensus       159 sa~~~~~i~~l~~~i~~~~~~~~~~  183 (197)
                      ++.+...+-+.|..+...+.+...+
T Consensus       156 ta~dR~sL~epf~~l~~rl~~pqsk  180 (198)
T KOG3883|consen  156 TAMDRPSLYEPFTYLASRLHQPQSK  180 (198)
T ss_pred             EeccchhhhhHHHHHHHhccCCccc
Confidence            9999999999999999998887554

>cd01894 EngA1 EngA1 subfamily

Probab=99.92  E-value=6.5e-24  Score=144.85  Aligned_cols=147  Identities=21%  Similarity=0.217  Sum_probs=105.2

Q ss_pred             EEEcCCCCCHHHHHHHHhhCC--CCCCCCCceeeeeeEEEEECCeEEEEEEEeCCCcccccc--------ccccCcCCCc
Q 036449           10 VTVGDGAVGKTCLLISYTSNT--FPTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQEDYNR--------LRPLSYRGAD   79 (197)
Q Consensus        10 ~v~G~~~~GKstli~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~--------~~~~~~~~~~   79 (197)
                      +++|.+|+|||||++++....  +.....+++..........++  ..+.+|||||+..+..        .....+..+|
T Consensus         1 ~l~G~~~~GKssl~~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~~~d   78 (157)
T cd01894           1 AIVGRPNVGKSTLFNRLTGRRDAIVEDTPGVTRDRIYGEAEWGG--REFILIDTGGIEPDDEGISKEIREQAELAIEEAD   78 (157)
T ss_pred             CccCCCCCCHHHHHHHHhCCcEEeecCCCCceeCceeEEEEECC--eEEEEEECCCCCCchhHHHHHHHHHHHHHHHhCC
Confidence            479999999999999999764  334445555444444455555  5678999999877543        2334577899


Q ss_pred             EEEEEEeCCCchhHHHHHHHHHHHHhhhCCCCCEEEEeeCCcccCCcccccCCCCCCcccHHHHHHHHHHhCCCceEEec
Q 036449           80 VFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPISTAQGEELRKLIGAPAYIECS  159 (197)
Q Consensus        80 ~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s  159 (197)
                      ++++|+|..++.+....  .+...+...  +.|+++|+||+|+.+...          .     .......+..+++++|
T Consensus        79 ~ii~v~d~~~~~~~~~~--~~~~~~~~~--~~piiiv~nK~D~~~~~~----------~-----~~~~~~~~~~~~~~~S  139 (157)
T cd01894          79 VILFVVDGREGLTPADE--EIAKYLRKS--KKPVILVVNKVDNIKEED----------E-----AAEFYSLGFGEPIPIS  139 (157)
T ss_pred             EEEEEEeccccCCccHH--HHHHHHHhc--CCCEEEEEECcccCChHH----------H-----HHHHHhcCCCCeEEEe
Confidence            99999999876554433  334444444  699999999999965432          1     2223345555789999


Q ss_pred             cCCCCCHHHHHHHHHHHH
Q 036449          160 SKTQQNVKAVFDAAIRVV  177 (197)
Q Consensus       160 a~~~~~i~~l~~~i~~~~  177 (197)
                      ++++.|++++|+++++.+
T Consensus       140 a~~~~gv~~l~~~l~~~~  157 (157)
T cd01894         140 AEHGRGIGDLLDAILELL  157 (157)
T ss_pred             cccCCCHHHHHHHHHhhC
Confidence            999999999999998753

This CD represents the first GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.

>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases

Probab=99.92  E-value=2.4e-24  Score=140.57  Aligned_cols=114  Identities=33%  Similarity=0.550  Sum_probs=87.7

Q ss_pred             EEEEEcCCCCCHHHHHHHHhhCCCCC--CCCCceeeee-eEEEEECCeEEEEEEEeCCCccccccccccCcCCCcEEEEE
Q 036449            8 KCVTVGDGAVGKTCLLISYTSNTFPT--DYVPTVFDNF-SANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILA   84 (197)
Q Consensus         8 ~i~v~G~~~~GKstli~~~~~~~~~~--~~~~~~~~~~-~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v   84 (197)
                      ||+|+|++|||||||+++|.+..+..  .+.++....+ ............+.+||++|++.+...+..++..+|++++|
T Consensus         1 kI~V~G~~g~GKTsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~d~~ilv   80 (119)
T PF08477_consen    1 KIVVLGDSGVGKTSLIRRLCGGEFPDNSVPEETSEITIGVDVIVVDGDRQSLQFWDFGGQEEFYSQHQFFLKKADAVILV   80 (119)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHSS--------SSTTSCEEEEEEEETTEEEEEEEEEESSSHCHHCTSHHHHHHSCEEEEE
T ss_pred             CEEEECcCCCCHHHHHHHHhcCCCcccccccccCCCcEEEEEEEecCCceEEEEEecCccceecccccchhhcCcEEEEE
Confidence            79999999999999999999988761  1222222222 33455666666799999999998888877779999999999


Q ss_pred             EeCCCchhHHHHHHH--HHHHHhhhCCCCCEEEEeeCCc
Q 036449           85 FSLISKASYENVSKK--WIPELKHYAPGVPIILVGTKLD  121 (197)
Q Consensus        85 ~d~~~~~s~~~~~~~--~~~~i~~~~~~~~~ivv~nK~D  121 (197)
                      ||++++++++.+...  |+..+....+++|+++|+||.|
T Consensus        81 ~D~s~~~s~~~~~~~~~~l~~~~~~~~~~piilv~nK~D  119 (119)
T PF08477_consen   81 YDLSDPESLEYLSQLLKWLKNIRKRDKNIPIILVGNKSD  119 (119)
T ss_dssp             EECCGHHHHHHHHHHHHHHHHHHHHSSCSEEEEEEE-TC
T ss_pred             EcCCChHHHHHHHHHHHHHHHHHccCCCCCEEEEEeccC
Confidence            999999999987333  5777776667899999999998

They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.

>cd01879 FeoB Ferrous iron transport protein B (FeoB) subfamily

Probab=99.92  E-value=1.5e-23  Score=143.23  Aligned_cols=148  Identities=16%  Similarity=0.238  Sum_probs=106.2

Q ss_pred             EEcCCCCCHHHHHHHHhhCCCCC-CCCCceeeeeeEEEEECCeEEEEEEEeCCCccccccc------cccCc--CCCcEE
Q 036449           11 TVGDGAVGKTCLLISYTSNTFPT-DYVPTVFDNFSANVVVNGSTVNLGLWDTAGQEDYNRL------RPLSY--RGADVF   81 (197)
Q Consensus        11 v~G~~~~GKstli~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~------~~~~~--~~~~~~   81 (197)
                      ++|.+|+|||||++++.+..+.. .+..++.......+.+++  ..+.+|||||+..+...      +..++  ..+|++
T Consensus         1 l~G~~~~GKssl~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~v   78 (158)
T cd01879           1 LVGNPNVGKTTLFNALTGARQKVGNWPGVTVEKKEGRFKLGG--KEIEIVDLPGTYSLSPYSEDEKVARDFLLGEKPDLI   78 (158)
T ss_pred             CCCCCCCCHHHHHHHHhcCcccccCCCCcccccceEEEeeCC--eEEEEEECCCccccCCCChhHHHHHHHhcCCCCcEE
Confidence            58999999999999998876433 333334444445555665  46789999999776542      33444  489999


Q ss_pred             EEEEeCCCchhHHHHHHHHHHHHhhhCCCCCEEEEeeCCcccCCcccccCCCCCCcccHHHHHHHHHHhCCCceEEeccC
Q 036449           82 ILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPISTAQGEELRKLIGAPAYIECSSK  161 (197)
Q Consensus        82 i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~  161 (197)
                      ++|+|.++++...    .+...+...  +.|+++|+||+|+.....          .. .....++...+. +++++||.
T Consensus        79 i~v~d~~~~~~~~----~~~~~~~~~--~~~~iiv~NK~Dl~~~~~----------~~-~~~~~~~~~~~~-~~~~iSa~  140 (158)
T cd01879          79 VNVVDATNLERNL----YLTLQLLEL--GLPVVVALNMIDEAEKRG----------IK-IDLDKLSELLGV-PVVPTSAR  140 (158)
T ss_pred             EEEeeCCcchhHH----HHHHHHHHc--CCCEEEEEehhhhccccc----------ch-hhHHHHHHhhCC-CeEEEEcc
Confidence            9999998865432    233333333  789999999999965432          22 223466677777 89999999


Q ss_pred             CCCCHHHHHHHHHHHHc
Q 036449          162 TQQNVKAVFDAAIRVVL  178 (197)
Q Consensus       162 ~~~~i~~l~~~i~~~~~  178 (197)
                      ++.|++++++++.+.+.
T Consensus       141 ~~~~~~~l~~~l~~~~~  157 (158)
T cd01879         141 KGEGIDELKDAIAELAE  157 (158)
T ss_pred             CCCCHHHHHHHHHHHhc
Confidence            99999999999988643

E. coli has an iron(II) transport system, known as feo, which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent.

>PRK04213 GTP-binding protein; Provisional

Probab=99.92  E-value=2.9e-24  Score=152.61  Aligned_cols=156  Identities=19%  Similarity=0.155  Sum_probs=102.4

Q ss_pred             CceeEEEEEcCCCCCHHHHHHHHhhCCCCCCCCCceeeeeeEEEEECCeEEEEEEEeCCC-----------ccccccccc
Q 036449            4 SRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWDTAG-----------QEDYNRLRP   72 (197)
Q Consensus         4 ~~~~~i~v~G~~~~GKstli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G-----------~~~~~~~~~   72 (197)
                      ...++|+++|.+|+|||||++++.+..+.....+.... ......+.    .+.+|||||           ++.++..+.
T Consensus         7 ~~~~~i~i~G~~~~GKSsLin~l~~~~~~~~~~~~~t~-~~~~~~~~----~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~   81 (201)
T PRK04213          7 DRKPEIVFVGRSNVGKSTLVRELTGKKVRVGKRPGVTR-KPNHYDWG----DFILTDLPGFGFMSGVPKEVQEKIKDEIV   81 (201)
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhCCCCccCCCCceee-CceEEeec----ceEEEeCCccccccccCHHHHHHHHHHHH
Confidence            35689999999999999999999987765444443321 12222222    478999999           455555544


Q ss_pred             cCc----CCCcEEEEEEeCCCchhHHH---------HHHHHHHHHhhhCCCCCEEEEeeCCcccCCcccccCCCCCCccc
Q 036449           73 LSY----RGADVFILAFSLISKASYEN---------VSKKWIPELKHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPIS  139 (197)
Q Consensus        73 ~~~----~~~~~~i~v~d~~~~~s~~~---------~~~~~~~~i~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~  139 (197)
                      .++    ..++++++|+|.++...+..         ....+...+..  .++|+++|+||+|+.+..             
T Consensus        82 ~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~l~~~~~~--~~~p~iiv~NK~Dl~~~~-------------  146 (201)
T PRK04213         82 RYIEDNADRILAAVLVVDGKSFIEIIERWEGRGEIPIDVEMFDFLRE--LGIPPIVAVNKMDKIKNR-------------  146 (201)
T ss_pred             HHHHhhhhhheEEEEEEeCccccccccccccCCCcHHHHHHHHHHHH--cCCCeEEEEECccccCcH-------------
Confidence            443    34578888888765432200         00122333333  379999999999985421             


Q ss_pred             HHHHHHHHHHhCC--------CceEEeccCCCCCHHHHHHHHHHHHcCC
Q 036449          140 TAQGEELRKLIGA--------PAYIECSSKTQQNVKAVFDAAIRVVLQP  180 (197)
Q Consensus       140 ~~~~~~~~~~~~~--------~~~~~~sa~~~~~i~~l~~~i~~~~~~~  180 (197)
                      .+...++++..+.        .+++++||++| |++++|++|.+.+...
T Consensus       147 ~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g-gi~~l~~~l~~~~~~~  194 (201)
T PRK04213        147 DEVLDEIAERLGLYPPWRQWQDIIAPISAKKG-GIEELKEAIRKRLHEA  194 (201)
T ss_pred             HHHHHHHHHHhcCCccccccCCcEEEEecccC-CHHHHHHHHHHhhcCc
Confidence            2334455555553        14799999999 9999999999886543

>KOG0075 consensus GTP-binding ADP-ribosylation factor-like protein [General function prediction only]

Probab=99.91  E-value=1.8e-24  Score=139.21  Aligned_cols=155  Identities=23%  Similarity=0.331  Sum_probs=125.7

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHhhCCCCCCCCCceeeeeeEEEEECCeEEEEEEEeCCCccccccccccCcCCCcEEEEEE
Q 036449            6 FIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAF   85 (197)
Q Consensus         6 ~~~i~v~G~~~~GKstli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~   85 (197)
                      .+.+.++|..++|||||++.+..+.+.+...||.+.....   +....+.+.+||.||+++|+++|+.|.+.+++++||+
T Consensus        20 emel~lvGLq~sGKtt~Vn~ia~g~~~edmiptvGfnmrk---~tkgnvtiklwD~gGq~rfrsmWerycR~v~aivY~V   96 (186)
T KOG0075|consen   20 EMELSLVGLQNSGKTTLVNVIARGQYLEDMIPTVGFNMRK---VTKGNVTIKLWDLGGQPRFRSMWERYCRGVSAIVYVV   96 (186)
T ss_pred             eeeEEEEeeccCCcceEEEEEeeccchhhhcccccceeEE---eccCceEEEEEecCCCccHHHHHHHHhhcCcEEEEEe
Confidence            4789999999999999999999988888877777654432   3334578889999999999999999999999999999


Q ss_pred             eCCCchhHHHHHHHHHHHHhhhC-CCCCEEEEeeCCcccCCcccccCCCCCCcccHHHHHHHHHHhCCC-------ceEE
Q 036449           86 SLISKASYENVSKKWIPELKHYA-PGVPIILVGTKLDLRDDKQFFIDHPGAVPISTAQGEELRKLIGAP-------AYIE  157 (197)
Q Consensus        86 d~~~~~s~~~~~~~~~~~i~~~~-~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~  157 (197)
                      |+.+++.+.....++...+.... .++|++++|||.|+...-.            .   ..+..++|..       -+|-
T Consensus        97 Daad~~k~~~sr~EL~~LL~k~~l~gip~LVLGnK~d~~~AL~------------~---~~li~rmgL~sitdREvcC~s  161 (186)
T KOG0075|consen   97 DAADPDKLEASRSELHDLLDKPSLTGIPLLVLGNKIDLPGALS------------K---IALIERMGLSSITDREVCCFS  161 (186)
T ss_pred             ecCCcccchhhHHHHHHHhcchhhcCCcEEEecccccCccccc------------H---HHHHHHhCccccccceEEEEE
Confidence            99999998888666666666555 6899999999999976422            1   2333334332       4688


Q ss_pred             eccCCCCCHHHHHHHHHHHHc
Q 036449          158 CSSKTQQNVKAVFDAAIRVVL  178 (197)
Q Consensus       158 ~sa~~~~~i~~l~~~i~~~~~  178 (197)
                      +|+++..|++.+.+||++.-.
T Consensus       162 iScke~~Nid~~~~Wli~hsk  182 (186)
T KOG0075|consen  162 ISCKEKVNIDITLDWLIEHSK  182 (186)
T ss_pred             EEEcCCccHHHHHHHHHHHhh
Confidence            999999999999999998654

>PRK03003 GTP-binding protein Der; Reviewed

Probab=99.91  E-value=1e-23  Score=166.77  Aligned_cols=161  Identities=20%  Similarity=0.204  Sum_probs=113.2

Q ss_pred             ceeEEEEEcCCCCCHHHHHHHHhhCCC--CCCCCCceeeeeeEEEEECCeEEEEEEEeCCCcc----------cccccc-
Q 036449            5 RFIKCVTVGDGAVGKTCLLISYTSNTF--PTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQE----------DYNRLR-   71 (197)
Q Consensus         5 ~~~~i~v~G~~~~GKstli~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~----------~~~~~~-   71 (197)
                      ..++|+++|.+++|||||++++++...  .....+++.+.....+.+++..  +.+|||||..          .|..+. 
T Consensus       210 ~~~kI~iiG~~nvGKSSLin~l~~~~~~~~s~~~gtT~d~~~~~~~~~~~~--~~l~DTaG~~~~~~~~~~~e~~~~~~~  287 (472)
T PRK03003        210 GPRRVALVGKPNVGKSSLLNKLAGEERSVVDDVAGTTVDPVDSLIELGGKT--WRFVDTAGLRRRVKQASGHEYYASLRT  287 (472)
T ss_pred             cceEEEEECCCCCCHHHHHHHHhCCCcccccCCCCccCCcceEEEEECCEE--EEEEECCCccccccccchHHHHHHHHH
Confidence            468999999999999999999998764  3445555555555566667644  5699999953          222222 


Q ss_pred             ccCcCCCcEEEEEEeCCCchhHHHHHHHHHHHHhhhCCCCCEEEEeeCCcccCCcccccCCCCCCcccHHHHHHHHHHhC
Q 036449           72 PLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPISTAQGEELRKLIG  151 (197)
Q Consensus        72 ~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  151 (197)
                      ..++..+|++++|+|++++.++++.  .++..+...  +.|+++|+||+|+.+...        ......+.........
T Consensus       288 ~~~i~~ad~vilV~Da~~~~s~~~~--~~~~~~~~~--~~piIiV~NK~Dl~~~~~--------~~~~~~~i~~~l~~~~  355 (472)
T PRK03003        288 HAAIEAAEVAVVLIDASEPISEQDQ--RVLSMVIEA--GRALVLAFNKWDLVDEDR--------RYYLEREIDRELAQVP  355 (472)
T ss_pred             HHHHhcCCEEEEEEeCCCCCCHHHH--HHHHHHHHc--CCCEEEEEECcccCChhH--------HHHHHHHHHHhcccCC
Confidence            2356889999999999999888876  344544443  799999999999964221        0011112222112223


Q ss_pred             CCceEEeccCCCCCHHHHHHHHHHHHcC
Q 036449          152 APAYIECSSKTQQNVKAVFDAAIRVVLQ  179 (197)
Q Consensus       152 ~~~~~~~sa~~~~~i~~l~~~i~~~~~~  179 (197)
                      ..+++++||++|.|++++|+.+.+.+..
T Consensus       356 ~~~~~~~SAk~g~gv~~lf~~i~~~~~~  383 (472)
T PRK03003        356 WAPRVNISAKTGRAVDKLVPALETALES  383 (472)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHHHHHH
Confidence            3489999999999999999999987654

>TIGR00450 mnmE_trmE_thdF tRNA modification GTPase TrmE

Probab=99.91  E-value=3e-23  Score=161.88  Aligned_cols=151  Identities=24%  Similarity=0.245  Sum_probs=114.3

Q ss_pred             ceeEEEEEcCCCCCHHHHHHHHhhCC--CCCCCCCceeeeeeEEEEECCeEEEEEEEeCCCccccccc--------cccC
Q 036449            5 RFIKCVTVGDGAVGKTCLLISYTSNT--FPTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQEDYNRL--------RPLS   74 (197)
Q Consensus         5 ~~~~i~v~G~~~~GKstli~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~--------~~~~   74 (197)
                      ..++|+++|.+|+|||||++++.+..  +...+++|+.+.....+.+++  ..+.+|||||+..+...        ...+
T Consensus       202 ~g~kVvIvG~~nvGKSSLiN~L~~~~~aivs~~pgtTrd~~~~~i~~~g--~~v~l~DTaG~~~~~~~ie~~gi~~~~~~  279 (442)
T TIGR00450       202 DGFKLAIVGSPNVGKSSLLNALLKQDRAIVSDIKGTTRDVVEGDFELNG--ILIKLLDTAGIREHADFVERLGIEKSFKA  279 (442)
T ss_pred             cCCEEEEECCCCCcHHHHHHHHhCCCCcccCCCCCcEEEEEEEEEEECC--EEEEEeeCCCcccchhHHHHHHHHHHHHH
Confidence            45899999999999999999999864  456667777666666777776  45679999998654432        2346


Q ss_pred             cCCCcEEEEEEeCCCchhHHHHHHHHHHHHhhhCCCCCEEEEeeCCcccCCcccccCCCCCCcccHHHHHHHHHHhCCCc
Q 036449           75 YRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPISTAQGEELRKLIGAPA  154 (197)
Q Consensus        75 ~~~~~~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  154 (197)
                      +.++|++++|+|++++.+++..   |+..+..  .+.|+++|+||+|+...                ....+++..+. +
T Consensus       280 ~~~aD~il~V~D~s~~~s~~~~---~l~~~~~--~~~piIlV~NK~Dl~~~----------------~~~~~~~~~~~-~  337 (442)
T TIGR00450       280 IKQADLVIYVLDASQPLTKDDF---LIIDLNK--SKKPFILVLNKIDLKIN----------------SLEFFVSSKVL-N  337 (442)
T ss_pred             HhhCCEEEEEEECCCCCChhHH---HHHHHhh--CCCCEEEEEECccCCCc----------------chhhhhhhcCC-c
Confidence            7899999999999998876653   5554443  37899999999999532                11234555666 7


Q ss_pred             eEEeccCCCCCHHHHHHHHHHHHcCC
Q 036449          155 YIECSSKTQQNVKAVFDAAIRVVLQP  180 (197)
Q Consensus       155 ~~~~sa~~~~~i~~l~~~i~~~~~~~  180 (197)
                      ++++||++ .|++++|+.+.+.+.+.
T Consensus       338 ~~~vSak~-~gI~~~~~~L~~~i~~~  362 (442)
T TIGR00450       338 SSNLSAKQ-LKIKALVDLLTQKINAF  362 (442)
T ss_pred             eEEEEEec-CCHHHHHHHHHHHHHHH
Confidence            89999998 68999999988877553

TrmE, also called MnmE and previously designated ThdF (thiophene and furan oxidation protein), is a GTPase involved in tRNA modification to create 5-methylaminomethyl-2-thiouridine in the wobble position of some tRNAs. This protein and GidA form an alpha2/beta2 heterotetramer.

>KOG0071 consensus GTP-binding ADP-ribosylation factor Arf6 (dArf3) [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.91  E-value=9.7e-24  Score=134.82  Aligned_cols=159  Identities=18%  Similarity=0.218  Sum_probs=126.0

Q ss_pred             CceeEEEEEcCCCCCHHHHHHHHhhCCCCCCCCCceeeeeeEEEEECCeEEEEEEEeCCCccccccccccCcCCCcEEEE
Q 036449            4 SRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFIL   83 (197)
Q Consensus         4 ~~~~~i~v~G~~~~GKstli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~   83 (197)
                      .+.++|+++|..++||||++.++..+.... ..||.+-.. ..+++  +.+.+++||.+|++..+.+|.+|+....++||
T Consensus        15 ~KE~~ilmlGLd~aGKTtiLyKLkl~~~~~-~ipTvGFnv-etVty--kN~kfNvwdvGGqd~iRplWrhYy~gtqglIF   90 (180)
T KOG0071|consen   15 NKEMRILMLGLDAAGKTTILYKLKLGQSVT-TIPTVGFNV-ETVTY--KNVKFNVWDVGGQDKIRPLWRHYYTGTQGLIF   90 (180)
T ss_pred             cccceEEEEecccCCceehhhHHhcCCCcc-cccccceeE-EEEEe--eeeEEeeeeccCchhhhHHHHhhccCCceEEE
Confidence            567999999999999999999998876543 355554332 23334  44889999999999999999999999999999


Q ss_pred             EEeCCCchhHHHHHHHHHHHHhhhC-CCCCEEEEeeCCcccCCcccccCCCCCCcccHHHHHHHH-----HHhCCCceEE
Q 036449           84 AFSLISKASYENVSKKWIPELKHYA-PGVPIILVGTKLDLRDDKQFFIDHPGAVPISTAQGEELR-----KLIGAPAYIE  157 (197)
Q Consensus        84 v~d~~~~~s~~~~~~~~~~~i~~~~-~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~  157 (197)
                      |+|..+....+++..++...+.... .+.|++|.+||.|+.....            ..+.+.+.     +..+. -..+
T Consensus        91 V~Dsa~~dr~eeAr~ELh~ii~~~em~~~~~LvlANkQDlp~A~~------------pqei~d~leLe~~r~~~W-~vqp  157 (180)
T KOG0071|consen   91 VVDSADRDRIEEARNELHRIINDREMRDAIILILANKQDLPDAMK------------PQEIQDKLELERIRDRNW-YVQP  157 (180)
T ss_pred             EEeccchhhHHHHHHHHHHHhCCHhhhcceEEEEecCcccccccC------------HHHHHHHhccccccCCcc-Eeec
Confidence            9999999999999888888888776 7899999999999976532            33333222     22222 3567


Q ss_pred             eccCCCCCHHHHHHHHHHHHcC
Q 036449          158 CSSKTQQNVKAVFDAAIRVVLQ  179 (197)
Q Consensus       158 ~sa~~~~~i~~l~~~i~~~~~~  179 (197)
                      ++|.+|+++.+-|.|+.+.+..
T Consensus       158 ~~a~~gdgL~eglswlsnn~~~  179 (180)
T KOG0071|consen  158 SCALSGDGLKEGLSWLSNNLKE  179 (180)
T ss_pred             cccccchhHHHHHHHHHhhccC
Confidence            9999999999999999987653

>cd01891 TypA_BipA TypA (tyrosine phosphorylated protein A)/BipA subfamily

Probab=99.91  E-value=3.8e-23  Score=146.02  Aligned_cols=148  Identities=16%  Similarity=0.094  Sum_probs=99.7

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhh--CCCCCCCC------------Cceeee-eeEEEEECCeEEEEEEEeCCCcccccccc
Q 036449            7 IKCVTVGDGAVGKTCLLISYTS--NTFPTDYV------------PTVFDN-FSANVVVNGSTVNLGLWDTAGQEDYNRLR   71 (197)
Q Consensus         7 ~~i~v~G~~~~GKstli~~~~~--~~~~~~~~------------~~~~~~-~~~~~~~~~~~~~~~i~D~~G~~~~~~~~   71 (197)
                      -+|+++|.+++|||||++++..  +.+...+.            .+.+.. ......+....+.+++|||||+++|...+
T Consensus         3 r~i~ivG~~~~GKTsL~~~l~~~~~~~~~~~~~~~~~~~~~~~e~~~g~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~   82 (194)
T cd01891           3 RNIAIIAHVDHGKTTLVDALLKQSGTFRENEEVEERVMDSNDLERERGITILAKNTAVTYKDTKINIVDTPGHADFGGEV   82 (194)
T ss_pred             cEEEEEecCCCCHHHHHHHHHHHcCCCCccCcccccccccchhHHhcccccccceeEEEECCEEEEEEECCCcHHHHHHH
Confidence            3799999999999999999997  55544321            111111 11222333345788999999999999988


Q ss_pred             ccCcCCCcEEEEEEeCCCchhHHHHHHHHHHHHhhhCCCCCEEEEeeCCcccCCcccccCCCCCCcccHHHHHHHHHH--
Q 036449           72 PLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPISTAQGEELRKL--  149 (197)
Q Consensus        72 ~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~--  149 (197)
                      ..++.++|++++|+|+++... ... ..++..+...  ++|+++|+||+|+.....         ....++...+...  
T Consensus        83 ~~~~~~~d~~ilV~d~~~~~~-~~~-~~~~~~~~~~--~~p~iiv~NK~Dl~~~~~---------~~~~~~~~~~~~~~~  149 (194)
T cd01891          83 ERVLSMVDGVLLLVDASEGPM-PQT-RFVLKKALEL--GLKPIVVINKIDRPDARP---------EEVVDEVFDLFIELG  149 (194)
T ss_pred             HHHHHhcCEEEEEEECCCCcc-HHH-HHHHHHHHHc--CCCEEEEEECCCCCCCCH---------HHHHHHHHHHHHHhC
Confidence            899999999999999987532 222 3334443333  789999999999965321         0122334444322  


Q ss_pred             -----hCCCceEEeccCCCCCHHH
Q 036449          150 -----IGAPAYIECSSKTQQNVKA  168 (197)
Q Consensus       150 -----~~~~~~~~~sa~~~~~i~~  168 (197)
                           .+. +++++||++|.|+.+
T Consensus       150 ~~~~~~~~-~iv~~Sa~~g~~~~~  172 (194)
T cd01891         150 ATEEQLDF-PVLYASAKNGWASLN  172 (194)
T ss_pred             CccccCcc-CEEEeehhccccccc
Confidence                 244 799999999977633

BipA is a protein belonging to the ribosome-binding family of GTPases and is widely distributed in bacteria and plants. BipA was originally described as a protein that is induced in Salmonella typhimurium after exposure to bactericidal/permeability-inducing protein (a cationic antimicrobial protein produced by neutrophils), and has since been identified in E. coli as well. The properties thus far described for BipA are related to its role in the process of pathogenesis by enteropathogenic E. coli. It appears to be involved in the regulation of several processes important for infection, including rearrangements of the cytoskeleton of the host, bacterial resistance to host defense peptides, flagellum-mediated cell motility, and expression of K5 capsular genes. It has been proposed that BipA may utilize a novel mechanism to regulate the expression of target genes. In addition, BipA from enteropathogenic E. co

>TIGR03156 GTP_HflX GTP-binding protein HflX

Probab=99.91  E-value=3.7e-23  Score=157.18  Aligned_cols=152  Identities=22%  Similarity=0.247  Sum_probs=108.4

Q ss_pred             ceeEEEEEcCCCCCHHHHHHHHhhCCCC-CCCCCceeeeeeEEEEECCeEEEEEEEeCCCcc---------ccccccccC
Q 036449            5 RFIKCVTVGDGAVGKTCLLISYTSNTFP-TDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQE---------DYNRLRPLS   74 (197)
Q Consensus         5 ~~~~i~v~G~~~~GKstli~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~---------~~~~~~~~~   74 (197)
                      ..++|+++|.+|+|||||++++.+.... .+...++.+.....+.+.+ ...+.+|||||..         .|.+.+ ..
T Consensus       188 ~~~~ValvG~~NvGKSSLln~L~~~~~~v~~~~~tT~d~~~~~i~~~~-~~~i~l~DT~G~~~~l~~~lie~f~~tl-e~  265 (351)
T TIGR03156       188 DVPTVALVGYTNAGKSTLFNALTGADVYAADQLFATLDPTTRRLDLPD-GGEVLLTDTVGFIRDLPHELVAAFRATL-EE  265 (351)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhCCceeeccCCccccCCEEEEEEeCC-CceEEEEecCcccccCCHHHHHHHHHHH-HH
Confidence            4589999999999999999999987643 3444445444555555632 2467899999972         222222 13


Q ss_pred             cCCCcEEEEEEeCCCchhHHHHHHHHHHHHhhhC-CCCCEEEEeeCCcccCCcccccCCCCCCcccHHHHHHHHHHhCCC
Q 036449           75 YRGADVFILAFSLISKASYENVSKKWIPELKHYA-PGVPIILVGTKLDLRDDKQFFIDHPGAVPISTAQGEELRKLIGAP  153 (197)
Q Consensus        75 ~~~~~~~i~v~d~~~~~s~~~~~~~~~~~i~~~~-~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  153 (197)
                      +.++|++++|+|++++.+.+.. ..|...+.... .+.|+++|+||+|+.+...          +     ..+. . +..
T Consensus       266 ~~~ADlil~VvD~s~~~~~~~~-~~~~~~L~~l~~~~~piIlV~NK~Dl~~~~~----------v-----~~~~-~-~~~  327 (351)
T TIGR03156       266 VREADLLLHVVDASDPDREEQI-EAVEKVLEELGAEDIPQLLVYNKIDLLDEPR----------I-----ERLE-E-GYP  327 (351)
T ss_pred             HHhCCEEEEEEECCCCchHHHH-HHHHHHHHHhccCCCCEEEEEEeecCCChHh----------H-----HHHH-h-CCC
Confidence            6789999999999999887776 55655555543 4789999999999954221          1     1111 1 223


Q ss_pred             ceEEeccCCCCCHHHHHHHHHHH
Q 036449          154 AYIECSSKTQQNVKAVFDAAIRV  176 (197)
Q Consensus       154 ~~~~~sa~~~~~i~~l~~~i~~~  176 (197)
                      +++++||++|.|+++++++|.+.
T Consensus       328 ~~i~iSAktg~GI~eL~~~I~~~  350 (351)
T TIGR03156       328 EAVFVSAKTGEGLDLLLEAIAER  350 (351)
T ss_pred             CEEEEEccCCCCHHHHHHHHHhh
Confidence            68999999999999999998764

This protein family is one of a number of homologous small, well-conserved GTP-binding proteins with pleiotropic effects. Bacterial members are designated HflX, following the naming convention in Escherichia coli where HflX is encoded immediately downstream of the RNA chaperone Hfq, and immediately upstream of HflKC, a membrane-associated protease pair with an important housekeeping function. Over large numbers of other bacterial genomes, the pairing with hfq is more significant than with hflK and hlfC. The gene from Homo sapiens in this family has been named PGPL (pseudoautosomal GTP-binding protein-like).

>PRK03003 GTP-binding protein Der; Reviewed

Probab=99.91  E-value=3.3e-23  Score=163.91  Aligned_cols=154  Identities=20%  Similarity=0.216  Sum_probs=110.3

Q ss_pred             ceeEEEEEcCCCCCHHHHHHHHhhCCC--CCCCCCceeeeeeEEEEECCeEEEEEEEeCCCccc--------cccccccC
Q 036449            5 RFIKCVTVGDGAVGKTCLLISYTSNTF--PTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQED--------YNRLRPLS   74 (197)
Q Consensus         5 ~~~~i~v~G~~~~GKstli~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~--------~~~~~~~~   74 (197)
                      ...+|+++|.+|||||||++++.+...  ......++.+.......+.+  ..+.+|||||.+.        +......+
T Consensus        37 ~~~~V~IvG~~nvGKSSL~nrl~~~~~~~v~~~~gvT~d~~~~~~~~~~--~~~~l~DT~G~~~~~~~~~~~~~~~~~~~  114 (472)
T PRK03003         37 PLPVVAVVGRPNVGKSTLVNRILGRREAVVEDVPGVTRDRVSYDAEWNG--RRFTVVDTGGWEPDAKGLQASVAEQAEVA  114 (472)
T ss_pred             CCCEEEEEcCCCCCHHHHHHHHhCcCcccccCCCCCCEeeEEEEEEECC--cEEEEEeCCCcCCcchhHHHHHHHHHHHH
Confidence            347899999999999999999998754  23333333444444455555  3577999999763        22334556


Q ss_pred             cCCCcEEEEEEeCCCchhHHHHHHHHHHHHhhhCCCCCEEEEeeCCcccCCcccccCCCCCCcccHHHHHHHHHHhCCCc
Q 036449           75 YRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPISTAQGEELRKLIGAPA  154 (197)
Q Consensus        75 ~~~~~~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  154 (197)
                      +..+|++|+|+|++++.+...  ..+...++..  +.|+++|+||+|+....             .+....+  ..+...
T Consensus       115 ~~~aD~il~VvD~~~~~s~~~--~~i~~~l~~~--~~piilV~NK~Dl~~~~-------------~~~~~~~--~~g~~~  175 (472)
T PRK03003        115 MRTADAVLFVVDATVGATATD--EAVARVLRRS--GKPVILAANKVDDERGE-------------ADAAALW--SLGLGE  175 (472)
T ss_pred             HHhCCEEEEEEECCCCCCHHH--HHHHHHHHHc--CCCEEEEEECccCCccc-------------hhhHHHH--hcCCCC
Confidence            789999999999999877654  3555656544  79999999999985421             1122222  234434


Q ss_pred             eEEeccCCCCCHHHHHHHHHHHHcC
Q 036449          155 YIECSSKTQQNVKAVFDAAIRVVLQ  179 (197)
Q Consensus       155 ~~~~sa~~~~~i~~l~~~i~~~~~~  179 (197)
                      .+++||++|.|++++|++|++.+..
T Consensus       176 ~~~iSA~~g~gi~eL~~~i~~~l~~  200 (472)
T PRK03003        176 PHPVSALHGRGVGDLLDAVLAALPE  200 (472)
T ss_pred             eEEEEcCCCCCcHHHHHHHHhhccc
Confidence            6799999999999999999998865

>TIGR02729 Obg_CgtA Obg family GTPase CgtA

Probab=99.91  E-value=5.6e-23  Score=154.91  Aligned_cols=157  Identities=21%  Similarity=0.203  Sum_probs=111.1

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhhCCC-CCCCCCceeeeeeEEEEECCeEEEEEEEeCCCccccc----ccccc---CcCCC
Q 036449            7 IKCVTVGDGAVGKTCLLISYTSNTF-PTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQEDYN----RLRPL---SYRGA   78 (197)
Q Consensus         7 ~~i~v~G~~~~GKstli~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~----~~~~~---~~~~~   78 (197)
                      -.|+++|.++||||||++++..... ...++.|+.......+.+++ ...+++||+||..+..    .+...   .+..+
T Consensus       158 adV~lvG~pnaGKSTLl~~lt~~~~~va~y~fTT~~p~ig~v~~~~-~~~~~i~D~PGli~~a~~~~gLg~~flrhiera  236 (329)
T TIGR02729       158 ADVGLVGLPNAGKSTLISAVSAAKPKIADYPFTTLVPNLGVVRVDD-GRSFVIADIPGLIEGASEGAGLGHRFLKHIERT  236 (329)
T ss_pred             ccEEEEcCCCCCHHHHHHHHhcCCccccCCCCCccCCEEEEEEeCC-ceEEEEEeCCCcccCCcccccHHHHHHHHHHhh
Confidence            4699999999999999999997643 33444444322222333433 3567899999974321    12222   34569


Q ss_pred             cEEEEEEeCCCc---hhHHHHHHHHHHHHhhhC---CCCCEEEEeeCCcccCCcccccCCCCCCcccHHHHHHHHHHhCC
Q 036449           79 DVFILAFSLISK---ASYENVSKKWIPELKHYA---PGVPIILVGTKLDLRDDKQFFIDHPGAVPISTAQGEELRKLIGA  152 (197)
Q Consensus        79 ~~~i~v~d~~~~---~s~~~~~~~~~~~i~~~~---~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  152 (197)
                      +++++|+|+++.   .+++.. ..|...+....   .+.|+++|+||+|+.+..           ...+..+.+++..+.
T Consensus       237 d~ll~VvD~s~~~~~~~~e~l-~~l~~EL~~~~~~l~~kp~IIV~NK~DL~~~~-----------~~~~~~~~l~~~~~~  304 (329)
T TIGR02729       237 RVLLHLIDISPLDGRDPIEDY-EIIRNELKKYSPELAEKPRIVVLNKIDLLDEE-----------ELAELLKELKKALGK  304 (329)
T ss_pred             CEEEEEEcCccccccCHHHHH-HHHHHHHHHhhhhhccCCEEEEEeCccCCChH-----------HHHHHHHHHHHHcCC
Confidence            999999999986   566666 67777666543   478999999999996532           123444556666665


Q ss_pred             CceEEeccCCCCCHHHHHHHHHHHH
Q 036449          153 PAYIECSSKTQQNVKAVFDAAIRVV  177 (197)
Q Consensus       153 ~~~~~~sa~~~~~i~~l~~~i~~~~  177 (197)
                       +++++||+++.|+++++++|.+.+
T Consensus       305 -~vi~iSAktg~GI~eL~~~I~~~l  328 (329)
T TIGR02729       305 -PVFPISALTGEGLDELLYALAELL  328 (329)
T ss_pred             -cEEEEEccCCcCHHHHHHHHHHHh
Confidence             899999999999999999998765

This model describes a univeral, mostly one-gene-per-genome GTP-binding protein that associates with ribosomal subunits and appears to play a role in ribosomal RNA maturation. This GTPase, related to the nucleolar protein Obg, is designated CgtA in bacteria. Mutations in this gene are pleiotropic, but it appears that effects on cellular functions such as chromosome partition may be secondary to the effect on ribosome structure. Recent work done in Vibrio cholerae shows an essential role in the stringent response, in which RelA-dependent ability to synthesize the alarmone ppGpp is required for deletion of this GTPase to be lethal.

>cd04164 trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein found in bacteria and eukaryotes

Probab=99.91  E-value=1.1e-22  Score=138.65  Aligned_cols=145  Identities=26%  Similarity=0.329  Sum_probs=105.0

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhhCCC--CCCCCCceeeeeeEEEEECCeEEEEEEEeCCCccccccc--------cccCcC
Q 036449            7 IKCVTVGDGAVGKTCLLISYTSNTF--PTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQEDYNRL--------RPLSYR   76 (197)
Q Consensus         7 ~~i~v~G~~~~GKstli~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~--------~~~~~~   76 (197)
                      ++|+++|++|+|||||++++.....  .....++...........++  ..+.+|||||...+...        ....+.
T Consensus         2 ~~i~l~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~   79 (157)
T cd04164           2 IKVVIVGKPNVGKSSLLNALAGRDRAIVSDIAGTTRDVIEESIDIGG--IPVRLIDTAGIRETEDEIEKIGIERAREAIE   79 (157)
T ss_pred             cEEEEECCCCCCHHHHHHHHHCCceEeccCCCCCccceEEEEEEeCC--EEEEEEECCCcCCCcchHHHHHHHHHHHHHh
Confidence            5899999999999999999998764  23334444333344444444  56789999997654321        123567


Q ss_pred             CCcEEEEEEeCCCchhHHHHHHHHHHHHhhhCCCCCEEEEeeCCcccCCcccccCCCCCCcccHHHHHHHHHHhCCCceE
Q 036449           77 GADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPISTAQGEELRKLIGAPAYI  156 (197)
Q Consensus        77 ~~~~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  156 (197)
                      .+|++++|+|++++.+.... ..+..     ..+.|+++|+||+|+.....          .       ....... +++
T Consensus        80 ~~~~~v~v~d~~~~~~~~~~-~~~~~-----~~~~~vi~v~nK~D~~~~~~----------~-------~~~~~~~-~~~  135 (157)
T cd04164          80 EADLVLFVIDASRGLDEEDL-EILEL-----PADKPIIVVLNKSDLLPDSE----------L-------LSLLAGK-PII  135 (157)
T ss_pred             hCCEEEEEEECCCCCCHHHH-HHHHh-----hcCCCEEEEEEchhcCCccc----------c-------ccccCCC-ceE
Confidence            89999999999998877765 32222     34799999999999976432          1       2233333 899


Q ss_pred             EeccCCCCCHHHHHHHHHHHH
Q 036449          157 ECSSKTQQNVKAVFDAAIRVV  177 (197)
Q Consensus       157 ~~sa~~~~~i~~l~~~i~~~~  177 (197)
                      ++||+++.|+++++++|.+.+
T Consensus       136 ~~Sa~~~~~v~~l~~~l~~~~  156 (157)
T cd04164         136 AISAKTGEGLDELKEALLELA  156 (157)
T ss_pred             EEECCCCCCHHHHHHHHHHhh
Confidence            999999999999999998754

It controls modification of the uridine at the wobble position (U34) of tRNAs that read codons ending with A or G in the mixed codon family boxes. TrmE contains a GTPase domain that forms a canonical Ras-like fold. It functions a molecular switch GTPase, and apparently uses a conformational change associated with GTP hydrolysis to promote the tRNA modification reaction, in which the conserved cysteine in the C-terminal domain is thought to function as a catalytic residue. In bacteria that are able to survive in extremely low pH conditions, TrmE regulates glutamate-dependent acid resistance.

>PF02421 FeoB_N: Ferrous iron transport protein B; InterPro: IPR011619 Escherichia coli has an iron(II) transport system (feo) which may make an important contribution to the iron supply of the cell under anaerobic conditions

Probab=99.91  E-value=1.1e-23  Score=141.36  Aligned_cols=147  Identities=20%  Similarity=0.272  Sum_probs=105.4

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhhCCC-CCCCCCceeeeeeEEEEECCeEEEEEEEeCCCcccccc------ccccC--cCC
Q 036449            7 IKCVTVGDGAVGKTCLLISYTSNTF-PTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQEDYNR------LRPLS--YRG   77 (197)
Q Consensus         7 ~~i~v~G~~~~GKstli~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~------~~~~~--~~~   77 (197)
                      ++|+++|.|++|||||+|++.+... ..+++.++.+.....+.+.+  ..+.++|+||...+..      ....+  ...
T Consensus         1 i~ialvG~PNvGKStLfN~Ltg~~~~v~n~pG~Tv~~~~g~~~~~~--~~~~lvDlPG~ysl~~~s~ee~v~~~~l~~~~   78 (156)
T PF02421_consen    1 IRIALVGNPNVGKSTLFNALTGAKQKVGNWPGTTVEKKEGIFKLGD--QQVELVDLPGIYSLSSKSEEERVARDYLLSEK   78 (156)
T ss_dssp             -EEEEEESTTSSHHHHHHHHHTTSEEEEESTTSSSEEEEEEEEETT--EEEEEEE----SSSSSSSHHHHHHHHHHHHTS
T ss_pred             CEEEEECCCCCCHHHHHHHHHCCCceecCCCCCCeeeeeEEEEecC--ceEEEEECCCcccCCCCCcHHHHHHHHHhhcC
Confidence            6899999999999999999998764 35566777666666677777  5566999999543321      11222  357


Q ss_pred             CcEEEEEEeCCCchhHHHHHHHHHHHHhhhCCCCCEEEEeeCCcccCCcccccCCCCCCcccHHHHHHHHHHhCCCceEE
Q 036449           78 ADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPISTAQGEELRKLIGAPAYIE  157 (197)
Q Consensus        78 ~~~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  157 (197)
                      .|++|.|+|+++.+.-.    .+...+...  +.|+++++||+|......          . ......+++..++ ++++
T Consensus        79 ~D~ii~VvDa~~l~r~l----~l~~ql~e~--g~P~vvvlN~~D~a~~~g----------~-~id~~~Ls~~Lg~-pvi~  140 (156)
T PF02421_consen   79 PDLIIVVVDATNLERNL----YLTLQLLEL--GIPVVVVLNKMDEAERKG----------I-EIDAEKLSERLGV-PVIP  140 (156)
T ss_dssp             SSEEEEEEEGGGHHHHH----HHHHHHHHT--TSSEEEEEETHHHHHHTT----------E-EE-HHHHHHHHTS--EEE
T ss_pred             CCEEEEECCCCCHHHHH----HHHHHHHHc--CCCEEEEEeCHHHHHHcC----------C-EECHHHHHHHhCC-CEEE
Confidence            99999999998754322    344455555  799999999999977553          2 2245678888998 8999


Q ss_pred             eccCCCCCHHHHHHHH
Q 036449          158 CSSKTQQNVKAVFDAA  173 (197)
Q Consensus       158 ~sa~~~~~i~~l~~~i  173 (197)
                      +||+++.|++++++.|
T Consensus       141 ~sa~~~~g~~~L~~~I  156 (156)
T PF02421_consen  141 VSARTGEGIDELKDAI  156 (156)
T ss_dssp             EBTTTTBTHHHHHHHH
T ss_pred             EEeCCCcCHHHHHhhC
Confidence            9999999999999875

FeoB has been identified as part of this transport system and may play a role in the transport of ferrous iron. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent [].; GO: 0005525 GTP binding, 0015093 ferrous iron transmembrane transporter activity, 0015684 ferrous iron transport, 0016021 integral to membrane; PDB: 3TAH_B 3B1X_A 3SS8_A 3B1W_C 3B1V_A 3LX5_A 3B1Y_A 3LX8_A 3B1Z_A 3K53_B ....

>cd01881 Obg_like The Obg-like subfamily consists of five well-delimited, ancient subfamilies, namely Obg, DRG, YyaF/YchF, Ygr210, and NOG1

Probab=99.91  E-value=4.7e-23  Score=143.23  Aligned_cols=152  Identities=26%  Similarity=0.288  Sum_probs=102.8

Q ss_pred             EEcCCCCCHHHHHHHHhhCCC-CCCCCCceeeeeeEEEEEC-CeEEEEEEEeCCCcccc----cccc---ccCcCCCcEE
Q 036449           11 TVGDGAVGKTCLLISYTSNTF-PTDYVPTVFDNFSANVVVN-GSTVNLGLWDTAGQEDY----NRLR---PLSYRGADVF   81 (197)
Q Consensus        11 v~G~~~~GKstli~~~~~~~~-~~~~~~~~~~~~~~~~~~~-~~~~~~~i~D~~G~~~~----~~~~---~~~~~~~~~~   81 (197)
                      ++|++|||||||++++.+... ...+..++.........++ +  ..+.+||+||....    ..+.   ...+..+|++
T Consensus         1 iiG~~~~GKStll~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~~d~i   78 (176)
T cd01881           1 LVGLPNVGKSTLLNALTNAKPKVANYPFTTLEPNLGVVEVPDG--ARIQVADIPGLIEGASEGRGLGNQFLAHIRRADAI   78 (176)
T ss_pred             CCCCCCCcHHHHHHHHhcCCccccCCCceeecCcceEEEcCCC--CeEEEEeccccchhhhcCCCccHHHHHHHhccCEE
Confidence            589999999999999998764 2333344433333334444 4  56789999997321    2222   2246779999


Q ss_pred             EEEEeCCCc------hhHHHHHHHHHHHHhhhC--------CCCCEEEEeeCCcccCCcccccCCCCCCcccHHHHHHHH
Q 036449           82 ILAFSLISK------ASYENVSKKWIPELKHYA--------PGVPIILVGTKLDLRDDKQFFIDHPGAVPISTAQGEELR  147 (197)
Q Consensus        82 i~v~d~~~~------~s~~~~~~~~~~~i~~~~--------~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~  147 (197)
                      ++|+|+++.      .+++.. ..|...+....        .+.|+++|+||+|+.....          ..........
T Consensus        79 i~v~d~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~~~----------~~~~~~~~~~  147 (176)
T cd01881          79 LHVVDASEDDDIGGVDPLEDY-EILNAELKLYDLETILGLLTAKPVIYVLNKIDLDDAEE----------LEEELVRELA  147 (176)
T ss_pred             EEEEeccCCccccccCHHHHH-HHHHHHHHHhhhhhHHHHHhhCCeEEEEEchhcCchhH----------HHHHHHHHHh
Confidence            999999988      466665 45555554332        3689999999999965432          1122122333


Q ss_pred             HHhCCCceEEeccCCCCCHHHHHHHHHHH
Q 036449          148 KLIGAPAYIECSSKTQQNVKAVFDAAIRV  176 (197)
Q Consensus       148 ~~~~~~~~~~~sa~~~~~i~~l~~~i~~~  176 (197)
                      ...+. +++++||+++.|++++++++.+.
T Consensus       148 ~~~~~-~~~~~Sa~~~~gl~~l~~~l~~~  175 (176)
T cd01881         148 LEEGA-EVVPISAKTEEGLDELIRAIYEL  175 (176)
T ss_pred             cCCCC-CEEEEehhhhcCHHHHHHHHHhh
Confidence            33344 79999999999999999998764

Four of these groups (Obg, DRG, YyaF/YchF, and Ygr210) are characterized by a distinct glycine-rich motif immediately following the Walker B motif (G3 box). Obg/CgtA is an essential gene that is involved in the initiation of sporulation and DNA replication in the bacteria Caulobacter and Bacillus, but its exact molecular role is unknown. Furthermore, several OBG family members possess a C-terminal RNA-binding domain, the TGS domain, which is also present in threonyl-tRNA synthetase and in bacterial guanosine polyphosphatase SpoT. Nog1 is a nucleolar protein that might function in ribosome assembly. The DRG and Nog1 subfamilies are ubiquitous in archaea and eukaryotes, the Ygr210 subfamily is present in archaea and fungi, and the Obg and YyaF/YchF subfamilies are ubiquitous in bacteria and eukaryotes. The Obg/Nog1 and DRG subfamilies appear to

>PRK05291 trmE tRNA modification GTPase TrmE; Reviewed

Probab=99.90  E-value=5.6e-23  Score=161.14  Aligned_cols=148  Identities=24%  Similarity=0.280  Sum_probs=112.1

Q ss_pred             ceeEEEEEcCCCCCHHHHHHHHhhCCC--CCCCCCceeeeeeEEEEECCeEEEEEEEeCCCccccccc--------cccC
Q 036449            5 RFIKCVTVGDGAVGKTCLLISYTSNTF--PTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQEDYNRL--------RPLS   74 (197)
Q Consensus         5 ~~~~i~v~G~~~~GKstli~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~--------~~~~   74 (197)
                      ..++|+++|.+|+|||||++++.+...  .....+++.+.....+.+++  ..+.+|||||...+...        ....
T Consensus       214 ~~~kV~ivG~~nvGKSSLln~L~~~~~a~v~~~~gtT~d~~~~~i~~~g--~~i~l~DT~G~~~~~~~ie~~gi~~~~~~  291 (449)
T PRK05291        214 EGLKVVIAGRPNVGKSSLLNALLGEERAIVTDIAGTTRDVIEEHINLDG--IPLRLIDTAGIRETDDEVEKIGIERSREA  291 (449)
T ss_pred             cCCEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCcccccEEEEEEECC--eEEEEEeCCCCCCCccHHHHHHHHHHHHH
Confidence            348999999999999999999998653  45566666666666666766  45789999998654321        1235


Q ss_pred             cCCCcEEEEEEeCCCchhHHHHHHHHHHHHhhhCCCCCEEEEeeCCcccCCcccccCCCCCCcccHHHHHHHHHHhCCCc
Q 036449           75 YRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPISTAQGEELRKLIGAPA  154 (197)
Q Consensus        75 ~~~~~~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  154 (197)
                      +.++|++++|+|++++.+++.. ..|..     ..+.|+++|+||+|+.+...          .  .      ...+. +
T Consensus       292 ~~~aD~il~VvD~s~~~s~~~~-~~l~~-----~~~~piiiV~NK~DL~~~~~----------~--~------~~~~~-~  346 (449)
T PRK05291        292 IEEADLVLLVLDASEPLTEEDD-EILEE-----LKDKPVIVVLNKADLTGEID----------L--E------EENGK-P  346 (449)
T ss_pred             HHhCCEEEEEecCCCCCChhHH-HHHHh-----cCCCCcEEEEEhhhccccch----------h--h------hccCC-c
Confidence            7889999999999999877754 33332     34789999999999965322          1  0      22333 7


Q ss_pred             eEEeccCCCCCHHHHHHHHHHHHcC
Q 036449          155 YIECSSKTQQNVKAVFDAAIRVVLQ  179 (197)
Q Consensus       155 ~~~~sa~~~~~i~~l~~~i~~~~~~  179 (197)
                      ++++||++|.|+++++++|.+.+..
T Consensus       347 ~i~iSAktg~GI~~L~~~L~~~l~~  371 (449)
T PRK05291        347 VIRISAKTGEGIDELREAIKELAFG  371 (449)
T ss_pred             eEEEEeeCCCCHHHHHHHHHHHHhh
Confidence            9999999999999999999998754

>TIGR00487 IF-2 translation initiation factor IF-2

Probab=99.90  E-value=1.4e-22  Score=162.47  Aligned_cols=155  Identities=18%  Similarity=0.231  Sum_probs=108.9

Q ss_pred             CceeEEEEEcCCCCCHHHHHHHHhhCCCCCCCCCceeeee-eEEEEECCeEEEEEEEeCCCccccccccccCcCCCcEEE
Q 036449            4 SRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNF-SANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFI   82 (197)
Q Consensus         4 ~~~~~i~v~G~~~~GKstli~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i   82 (197)
                      .+..+|+++|+.++|||||++++....+...+.+...... ...+.+++. ..+.+||||||+.|..++...+..+|++|
T Consensus        85 ~r~p~V~I~Ghvd~GKTSLl~~l~~~~v~~~e~~GIT~~ig~~~v~~~~~-~~i~~iDTPGhe~F~~~r~rga~~aDiaI  163 (587)
T TIGR00487        85 ERPPVVTIMGHVDHGKTSLLDSIRKTKVAQGEAGGITQHIGAYHVENEDG-KMITFLDTPGHEAFTSMRARGAKVTDIVV  163 (587)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHHhCCcccccCCceeecceEEEEEECCC-cEEEEEECCCCcchhhHHHhhhccCCEEE
Confidence            3568999999999999999999998877665444332222 223334332 26789999999999999988899999999


Q ss_pred             EEEeCCCchhHHHHHHHHHHHHhhhCCCCCEEEEeeCCcccCCcccccCCCCCCcccHHHHHHHHHH-------hC-CCc
Q 036449           83 LAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPISTAQGEELRKL-------IG-APA  154 (197)
Q Consensus        83 ~v~d~~~~~s~~~~~~~~~~~i~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~-~~~  154 (197)
                      +|+|++++...+.. . .+.....  .++|+++++||+|+....             .+........       ++ ..+
T Consensus       164 LVVda~dgv~~qT~-e-~i~~~~~--~~vPiIVviNKiDl~~~~-------------~e~v~~~L~~~g~~~~~~~~~~~  226 (587)
T TIGR00487       164 LVVAADDGVMPQTI-E-AISHAKA--ANVPIIVAINKIDKPEAN-------------PDRVKQELSEYGLVPEDWGGDTI  226 (587)
T ss_pred             EEEECCCCCCHhHH-H-HHHHHHH--cCCCEEEEEECcccccCC-------------HHHHHHHHHHhhhhHHhcCCCce
Confidence            99999875433332 1 1222222  379999999999996421             1222222222       22 136


Q ss_pred             eEEeccCCCCCHHHHHHHHHHH
Q 036449          155 YIECSSKTQQNVKAVFDAAIRV  176 (197)
Q Consensus       155 ~~~~sa~~~~~i~~l~~~i~~~  176 (197)
                      ++++||++|.|+++++++|...
T Consensus       227 ~v~iSAktGeGI~eLl~~I~~~  248 (587)
T TIGR00487       227 FVPVSALTGDGIDELLDMILLQ  248 (587)
T ss_pred             EEEEECCCCCChHHHHHhhhhh
Confidence            9999999999999999998753

This model discriminates eubacterial (and mitochondrial) translation initiation factor 2 (IF-2), encoded by the infB gene in bacteria, from similar proteins in the Archaea and Eukaryotes. In the bacteria and in organelles, the initiator tRNA is charged with N-formyl-Met instead of Met. This translation factor acts in delivering the initator tRNA to the ribosome. It is one of a number of GTP-binding translation factors recognized by the pfam model GTP_EFTU.

>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA

Probab=99.90  E-value=2.5e-22  Score=157.89  Aligned_cols=160  Identities=23%  Similarity=0.252  Sum_probs=112.2

Q ss_pred             CceeEEEEEcCCCCCHHHHHHHHhhCCC--CCCCCCceeeeeeEEEEECCeEEEEEEEeCCCcccccccc----------
Q 036449            4 SRFIKCVTVGDGAVGKTCLLISYTSNTF--PTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQEDYNRLR----------   71 (197)
Q Consensus         4 ~~~~~i~v~G~~~~GKstli~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~----------   71 (197)
                      ...++|+++|.+++|||||++++++...  .....+++.+.....+..++.  .+.+|||||..++....          
T Consensus       170 ~~~~~v~ivG~~~~GKSsLin~l~~~~~~~~~~~~gtt~~~~~~~~~~~~~--~~~liDT~G~~~~~~~~~~~e~~~~~~  247 (429)
T TIGR03594       170 DGPIKIAIIGRPNVGKSTLVNALLGEERVIVSDIAGTTRDSIDIPFERNGK--KYLLIDTAGIRRKGKVTEGVEKYSVLR  247 (429)
T ss_pred             CCceEEEEECCCCCCHHHHHHHHHCCCeeecCCCCCceECcEeEEEEECCc--EEEEEECCCccccccchhhHHHHHHHH
Confidence            3458999999999999999999997653  344555655555555555554  57799999976544322          


Q ss_pred             -ccCcCCCcEEEEEEeCCCchhHHHHHHHHHHHHhhhCCCCCEEEEeeCCcccCCcccccCCCCCCcccHHHHHHHHHH-
Q 036449           72 -PLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPISTAQGEELRKL-  149 (197)
Q Consensus        72 -~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~-  149 (197)
                       ...+..+|++|+|+|++++.+.++.  .+...+...  +.|+++|+||+|+.....          ...+....+... 
T Consensus       248 ~~~~~~~ad~~ilV~D~~~~~~~~~~--~~~~~~~~~--~~~iiiv~NK~Dl~~~~~----------~~~~~~~~~~~~~  313 (429)
T TIGR03594       248 TLKAIERADVVLLVLDATEGITEQDL--RIAGLILEA--GKALVIVVNKWDLVKDEK----------TREEFKKELRRKL  313 (429)
T ss_pred             HHHHHHhCCEEEEEEECCCCccHHHH--HHHHHHHHc--CCcEEEEEECcccCCCHH----------HHHHHHHHHHHhc
Confidence             2357789999999999998777665  344444443  789999999999962111          011111122222 


Q ss_pred             --hCCCceEEeccCCCCCHHHHHHHHHHHHcC
Q 036449          150 --IGAPAYIECSSKTQQNVKAVFDAAIRVVLQ  179 (197)
Q Consensus       150 --~~~~~~~~~sa~~~~~i~~l~~~i~~~~~~  179 (197)
                        .+..+++++||++|.|++++|+++.+.+..
T Consensus       314 ~~~~~~~vi~~SA~~g~~v~~l~~~i~~~~~~  345 (429)
T TIGR03594       314 PFLDFAPIVFISALTGQGVDKLLDAIDEVYEN  345 (429)
T ss_pred             ccCCCCceEEEeCCCCCCHHHHHHHHHHHHHH
Confidence              233489999999999999999999887654

EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.

>cd04163 Era Era subfamily

Probab=99.90  E-value=1.3e-22  Score=139.58  Aligned_cols=155  Identities=19%  Similarity=0.176  Sum_probs=103.9

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHhhCCCCCC--CCCceeeeeeEEEEECCeEEEEEEEeCCCcccccc--------ccccCc
Q 036449            6 FIKCVTVGDGAVGKTCLLISYTSNTFPTD--YVPTVFDNFSANVVVNGSTVNLGLWDTAGQEDYNR--------LRPLSY   75 (197)
Q Consensus         6 ~~~i~v~G~~~~GKstli~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~--------~~~~~~   75 (197)
                      ..+|+++|++|+|||||++++.+......  ...+........  .......+.+||+||......        .....+
T Consensus         3 ~~~i~~~G~~g~GKttl~~~l~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~   80 (168)
T cd04163           3 SGFVAIVGRPNVGKSTLLNALVGQKISIVSPKPQTTRNRIRGI--YTDDDAQIIFVDTPGIHKPKKKLGERMVKAAWSAL   80 (168)
T ss_pred             eeEEEEECCCCCCHHHHHHHHhCCceEeccCCCCceeceEEEE--EEcCCeEEEEEECCCCCcchHHHHHHHHHHHHHHH
Confidence            57899999999999999999987654221  112221111111  222236678999999654322        223357


Q ss_pred             CCCcEEEEEEeCCCchhHHHHHHHHHHHHhhhCCCCCEEEEeeCCcccCCcccccCCCCCCcccHHHHHHHHHHhCCCce
Q 036449           76 RGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPISTAQGEELRKLIGAPAY  155 (197)
Q Consensus        76 ~~~~~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  155 (197)
                      ..+|++++|+|.+++.+..  ...+...+...  +.|+++|+||+|+.....          ...+....+....+..++
T Consensus        81 ~~~d~i~~v~d~~~~~~~~--~~~~~~~~~~~--~~~~iiv~nK~Dl~~~~~----------~~~~~~~~~~~~~~~~~~  146 (168)
T cd04163          81 KDVDLVLFVVDASEPIGEG--DEFILELLKKS--KTPVILVLNKIDLVKDKE----------DLLPLLEKLKELGPFAEI  146 (168)
T ss_pred             HhCCEEEEEEECCCccCch--HHHHHHHHHHh--CCCEEEEEEchhccccHH----------HHHHHHHHHHhccCCCce
Confidence            7899999999999872222  13444445444  689999999999974221          223334455555544589


Q ss_pred             EEeccCCCCCHHHHHHHHHHH
Q 036449          156 IECSSKTQQNVKAVFDAAIRV  176 (197)
Q Consensus       156 ~~~sa~~~~~i~~l~~~i~~~  176 (197)
                      +++|++++.|++++++.|.+.
T Consensus       147 ~~~s~~~~~~~~~l~~~l~~~  167 (168)
T cd04163         147 FPISALKGENVDELLEEIVKY  167 (168)
T ss_pred             EEEEeccCCChHHHHHHHHhh
Confidence            999999999999999999775

Era (E. coli Ras-like protein) is a multifunctional GTPase found in all bacteria except some eubacteria. It binds to the 16S ribosomal RNA (rRNA) of the 30S subunit and appears to play a role in the assembly of the 30S subunit, possibly by chaperoning the 16S rRNA. It also contacts several assembly elements of the 30S subunit. Era couples cell growth with cytokinesis and plays a role in cell division and energy metabolism. Homologs have also been found in eukaryotes. Era contains two domains: the N-terminal GTPase domain and a C-terminal domain KH domain that is critical for RNA binding. Both domains are important for Era function. Era is functionally able to compensate for deletion of RbfA, a cold-shock adaptation protein that is required for efficient processing of the 16S rRNA.

>cd00881 GTP_translation_factor GTP translation factor family

Probab=99.90  E-value=9e-23  Score=143.34  Aligned_cols=157  Identities=20%  Similarity=0.159  Sum_probs=109.5

Q ss_pred             EEEEEcCCCCCHHHHHHHHhhCCCCCCCCCce-----------------eeeeeEEEEECCeEEEEEEEeCCCccccccc
Q 036449            8 KCVTVGDGAVGKTCLLISYTSNTFPTDYVPTV-----------------FDNFSANVVVNGSTVNLGLWDTAGQEDYNRL   70 (197)
Q Consensus         8 ~i~v~G~~~~GKstli~~~~~~~~~~~~~~~~-----------------~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~   70 (197)
                      +|+++|.+|+|||||++++...........+.                 ...........  ...+.+||+||+..+...
T Consensus         1 ~v~v~G~~~~GKStlln~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~liDtpG~~~~~~~   78 (189)
T cd00881           1 NVGIAGHVDHGKTTLTERLLYVTGDIERDGTVEETFLDVLKEERERGITIKSGVATFEWP--DRRVNFIDTPGHEDFSSE   78 (189)
T ss_pred             CEEEEeCCCCCHHHHHHHHHHhcCCCCcCCceecccccCCHHHHHcCCCeecceEEEeeC--CEEEEEEeCCCcHHHHHH
Confidence            58999999999999999999876654332211                 11111112222  357889999999888888


Q ss_pred             cccCcCCCcEEEEEEeCCCchhHHHHHHHHHHHHhhhCCCCCEEEEeeCCcccCCcccccCCCCCCcccHHHHHHHHHHh
Q 036449           71 RPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPISTAQGEELRKLI  150 (197)
Q Consensus        71 ~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  150 (197)
                      +..++..+|++++|+|.+++.+....  .++..+..  .+.|+++++||+|+.....        ......+.++..+..
T Consensus        79 ~~~~~~~~d~~i~v~d~~~~~~~~~~--~~~~~~~~--~~~~i~iv~nK~D~~~~~~--------~~~~~~~~~~~~~~~  146 (189)
T cd00881          79 VIRGLSVSDGAILVVDANEGVQPQTR--EHLRIARE--GGLPIIVAINKIDRVGEED--------LEEVLREIKELLGLI  146 (189)
T ss_pred             HHHHHHhcCEEEEEEECCCCCcHHHH--HHHHHHHH--CCCCeEEEEECCCCcchhc--------HHHHHHHHHHHHccc
Confidence            88888999999999999887655433  34444444  3799999999999975221        001122333333332


Q ss_pred             C-------------CCceEEeccCCCCCHHHHHHHHHHHHc
Q 036449          151 G-------------APAYIECSSKTQQNVKAVFDAAIRVVL  178 (197)
Q Consensus       151 ~-------------~~~~~~~sa~~~~~i~~l~~~i~~~~~  178 (197)
                      +             ..+++++||++|.|+++++.++.+.+.
T Consensus       147 ~~~~~~~~~~~~~~~~~v~~~Sa~~g~gi~~l~~~l~~~l~  187 (189)
T cd00881         147 GFISTKEEGTRNGLLVPIVPGSALTGIGVEELLEAIVEHLP  187 (189)
T ss_pred             cccchhhhhcccCCcceEEEEecccCcCHHHHHHHHHhhCC
Confidence            1             347999999999999999999998863

This family consists primarily of translation initiation, elongation, and release factors, which play specific roles in protein translation. In addition, the family includes Snu114p, a component of the U5 small nuclear riboprotein particle which is a component of the spliceosome and is involved in excision of introns, TetM, a tetracycline resistance gene that protects the ribosome from tetracycline binding, and the unusual subfamily CysN/ATPS, which has an unrelated function (ATP sulfurylase) acquired through lateral transfer of the EF1-alpha gene and development of a new function.

>cd01895 EngA2 EngA2 subfamily

Probab=99.90  E-value=1.1e-21  Score=135.93  Aligned_cols=155  Identities=22%  Similarity=0.276  Sum_probs=104.2

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHhhCCCC--CCCCCceeeeeeEEEEECCeEEEEEEEeCCCccccccc-----------cc
Q 036449            6 FIKCVTVGDGAVGKTCLLISYTSNTFP--TDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQEDYNRL-----------RP   72 (197)
Q Consensus         6 ~~~i~v~G~~~~GKstli~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~-----------~~   72 (197)
                      .++|+++|.+|+|||||++++.+....  .....+...........++.  .+.+||+||.......           ..
T Consensus         2 ~~~i~i~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~iiDtpG~~~~~~~~~~~e~~~~~~~~   79 (174)
T cd01895           2 PIRIAIIGRPNVGKSSLVNALLGEERVIVSDIAGTTRDSIDVPFEYDGK--KYTLIDTAGIRRKGKVEEGIEKYSVLRTL   79 (174)
T ss_pred             CcEEEEEcCCCCCHHHHHHHHhCccceeccCCCCCccCceeeEEEECCe--eEEEEECCCCccccchhccHHHHHHHHHH
Confidence            589999999999999999999876532  23333333333344445553  4679999997543110           11


Q ss_pred             cCcCCCcEEEEEEeCCCchhHHHHHHHHHHHHhhhCCCCCEEEEeeCCcccCCcccccCCCCCCcccHHH-HHHHHHHhC
Q 036449           73 LSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPISTAQ-GEELRKLIG  151 (197)
Q Consensus        73 ~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~  151 (197)
                      ..+..+|++++|+|.+++.+....  .+...+...  +.|+++++||+|+.....          ...+. ...+.+..+
T Consensus        80 ~~~~~~d~vi~v~d~~~~~~~~~~--~~~~~~~~~--~~~~iiv~nK~Dl~~~~~----------~~~~~~~~~~~~~~~  145 (174)
T cd01895          80 KAIERADVVLLVIDATEGITEQDL--RIAGLILEE--GKALVIVVNKWDLVEKDS----------KTMKEFKKEIRRKLP  145 (174)
T ss_pred             HHHhhcCeEEEEEeCCCCcchhHH--HHHHHHHhc--CCCEEEEEeccccCCccH----------HHHHHHHHHHHhhcc
Confidence            245689999999999998776543  333333333  689999999999975421          11111 222333332


Q ss_pred             ---CCceEEeccCCCCCHHHHHHHHHHH
Q 036449          152 ---APAYIECSSKTQQNVKAVFDAAIRV  176 (197)
Q Consensus       152 ---~~~~~~~sa~~~~~i~~l~~~i~~~  176 (197)
                         ..+++++||+++.|++++++.+.+.
T Consensus       146 ~~~~~~~~~~Sa~~~~~i~~~~~~l~~~  173 (174)
T cd01895         146 FLDYAPIVFISALTGQGVDKLFDAIDEV  173 (174)
T ss_pred             cccCCceEEEeccCCCCHHHHHHHHHHh
Confidence               2479999999999999999998764

This CD represents the second GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.

>TIGR01393 lepA GTP-binding protein LepA

Probab=99.90  E-value=2.3e-22  Score=162.03  Aligned_cols=159  Identities=19%  Similarity=0.219  Sum_probs=115.0

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHhhCC-------CCCCCCCce------eeeee---EEEEE---CCeEEEEEEEeCCCccc
Q 036449            6 FIKCVTVGDGAVGKTCLLISYTSNT-------FPTDYVPTV------FDNFS---ANVVV---NGSTVNLGLWDTAGQED   66 (197)
Q Consensus         6 ~~~i~v~G~~~~GKstli~~~~~~~-------~~~~~~~~~------~~~~~---~~~~~---~~~~~~~~i~D~~G~~~   66 (197)
                      .=+|+++|+.++|||||+++++...       +...+..+.      +..+.   ..+.+   ++..+.+++|||||+.+
T Consensus         3 iRNi~IIGh~d~GKTTL~~rLl~~~g~i~~~~~~~~~~D~~~~ErerGiTi~~~~v~~~~~~~~g~~~~l~liDTPG~~d   82 (595)
T TIGR01393         3 IRNFSIIAHIDHGKSTLADRLLEYTGAISEREMREQVLDSMDLERERGITIKAQAVRLNYKAKDGETYVLNLIDTPGHVD   82 (595)
T ss_pred             eeEEEEECCCCCCHHHHHHHHHHHcCCCccccccccccCCChHHHhcCCCeeeeEEEEEEEcCCCCEEEEEEEECCCcHH
Confidence            3479999999999999999998642       112221111      11111   11222   45678999999999999


Q ss_pred             cccccccCcCCCcEEEEEEeCCCchhHHHHHHHHHHHHhhhCCCCCEEEEeeCCcccCCcccccCCCCCCcccHHHHHHH
Q 036449           67 YNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPISTAQGEEL  146 (197)
Q Consensus        67 ~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~  146 (197)
                      |...+..++..+|++|+|+|++++.+.+.. ..|...+.   .+.|+++|+||+|+....            ......++
T Consensus        83 F~~~v~~~l~~aD~aILVvDat~g~~~qt~-~~~~~~~~---~~ipiIiViNKiDl~~~~------------~~~~~~el  146 (595)
T TIGR01393        83 FSYEVSRSLAACEGALLLVDAAQGIEAQTL-ANVYLALE---NDLEIIPVINKIDLPSAD------------PERVKKEI  146 (595)
T ss_pred             HHHHHHHHHHhCCEEEEEecCCCCCCHhHH-HHHHHHHH---cCCCEEEEEECcCCCccC------------HHHHHHHH
Confidence            998888899999999999999998777765 44444332   268999999999986422            12223455


Q ss_pred             HHHhCCC--ceEEeccCCCCCHHHHHHHHHHHHcCC
Q 036449          147 RKLIGAP--AYIECSSKTQQNVKAVFDAAIRVVLQP  180 (197)
Q Consensus       147 ~~~~~~~--~~~~~sa~~~~~i~~l~~~i~~~~~~~  180 (197)
                      .+..+..  .++++||++|.|++++|++|.+.+..+
T Consensus       147 ~~~lg~~~~~vi~vSAktG~GI~~Lle~I~~~lp~p  182 (595)
T TIGR01393       147 EEVIGLDASEAILASAKTGIGIEEILEAIVKRVPPP  182 (595)
T ss_pred             HHHhCCCcceEEEeeccCCCCHHHHHHHHHHhCCCC
Confidence            5555552  489999999999999999999987654

LepA (GUF1 in Saccaromyces) is a GTP-binding membrane protein related to EF-G and EF-Tu. Two types of phylogenetic tree, rooted by other GTP-binding proteins, suggest that eukaryotic homologs (including GUF1 of yeast) originated within the bacterial LepA family. The function is unknown.

>KOG0076 consensus GTP-binding ADP-ribosylation factor-like protein yARL3 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.89  E-value=1.2e-23  Score=139.12  Aligned_cols=168  Identities=21%  Similarity=0.289  Sum_probs=124.5

Q ss_pred             CCCCceeEEEEEcCCCCCHHHHHHHHhhC------CC-CCCCCCceeeeeeEEEEECCeEEEEEEEeCCCcccccccccc
Q 036449            1 MSASRFIKCVTVGDGAVGKTCLLISYTSN------TF-PTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQEDYNRLRPL   73 (197)
Q Consensus         1 m~~~~~~~i~v~G~~~~GKstli~~~~~~------~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~   73 (197)
                      |..+..+.|+++|..++|||||+.+....      .. +....+|.+... .++.+.+  ..+.+||.+||+..+++|..
T Consensus        12 ~~~Ke~y~vlIlgldnAGKttfLe~~Kt~~~~~~~~l~~~ki~~tvgLni-g~i~v~~--~~l~fwdlgGQe~lrSlw~~   88 (197)
T KOG0076|consen   12 MFKKEDYSVLILGLDNAGKTTFLEALKTDFSKAYGGLNPSKITPTVGLNI-GTIEVCN--APLSFWDLGGQESLRSLWKK   88 (197)
T ss_pred             HhhhhhhhheeeccccCCchhHHHHHHHHHHhhhcCCCHHHeecccceee-cceeecc--ceeEEEEcCChHHHHHHHHH
Confidence            45567799999999999999999655421      11 223344444333 2333443  56779999999999999999


Q ss_pred             CcCCCcEEEEEEeCCCchhHHHHHHHHHHHHhhhC-CCCCEEEEeeCCcccCCcccccCCCCCCcccHHHHHHHHHHhCC
Q 036449           74 SYRGADVFILAFSLISKASYENVSKKWIPELKHYA-PGVPIILVGTKLDLRDDKQFFIDHPGAVPISTAQGEELRKLIGA  152 (197)
Q Consensus        74 ~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~i~~~~-~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  152 (197)
                      ++..+|++|+++|++|++.++.....+...+.... .+.|+++.+||.|+.+....         ........++...+.
T Consensus        89 yY~~~H~ii~viDa~~~eR~~~~~t~~~~v~~~E~leg~p~L~lankqd~q~~~~~---------~El~~~~~~~e~~~~  159 (197)
T KOG0076|consen   89 YYWLAHGIIYVIDATDRERFEESKTAFEKVVENEKLEGAPVLVLANKQDLQNAMEA---------AELDGVFGLAELIPR  159 (197)
T ss_pred             HHHHhceeEEeecCCCHHHHHHHHHHHHHHHHHHHhcCCchhhhcchhhhhhhhhH---------HHHHHHhhhhhhcCC
Confidence            99999999999999999999988666666666555 79999999999999775320         111122222333332


Q ss_pred             --CceEEeccCCCCCHHHHHHHHHHHHcCC
Q 036449          153 --PAYIECSSKTQQNVKAVFDAAIRVVLQP  180 (197)
Q Consensus       153 --~~~~~~sa~~~~~i~~l~~~i~~~~~~~  180 (197)
                        .++.++||.+|+||++-..|+++.+..+
T Consensus       160 rd~~~~pvSal~gegv~egi~w~v~~~~kn  189 (197)
T KOG0076|consen  160 RDNPFQPVSALTGEGVKEGIEWLVKKLEKN  189 (197)
T ss_pred             ccCccccchhhhcccHHHHHHHHHHHHhhc
Confidence              2689999999999999999999998877

>cd01889 SelB_euk SelB subfamily

Probab=99.89  E-value=1.6e-22  Score=142.56  Aligned_cols=162  Identities=15%  Similarity=0.135  Sum_probs=101.4

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhhC----CCCCCC----CCceeeeeeEEEEE------------CCeEEEEEEEeCCCccc
Q 036449            7 IKCVTVGDGAVGKTCLLISYTSN----TFPTDY----VPTVFDNFSANVVV------------NGSTVNLGLWDTAGQED   66 (197)
Q Consensus         7 ~~i~v~G~~~~GKstli~~~~~~----~~~~~~----~~~~~~~~~~~~~~------------~~~~~~~~i~D~~G~~~   66 (197)
                      ++|+++|++++|||||++++...    .+...+    ..++.........+            .+..+.+.+|||||+..
T Consensus         1 ~~i~i~G~~~~GKstLi~~l~~~~~~~~~~~~~~e~~~g~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~   80 (192)
T cd01889           1 VNVGVLGHVDSGKTSLAKALSEIASTAAFDKNPQSQERGITLDLGFSSFYVDKPKHLRELINPGEENLQITLVDCPGHAS   80 (192)
T ss_pred             CeEEEEecCCCCHHHHHHHHHhccchhhhccCHHHHHcCCeeeecceEEEecccccccccccccccCceEEEEECCCcHH
Confidence            58999999999999999999863    111111    11111111111222            23357889999999976


Q ss_pred             cccccccCcCCCcEEEEEEeCCCchhHHHHHHHHHHHHhhhCCCCCEEEEeeCCcccCCcccccCCCCCCcccHHHHHH-
Q 036449           67 YNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPISTAQGEE-  145 (197)
Q Consensus        67 ~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~-  145 (197)
                      +..........+|++++|+|++++...... ..+. .....  +.|+++++||+|+.....        .....++..+ 
T Consensus        81 ~~~~~~~~~~~~d~vi~VvD~~~~~~~~~~-~~~~-~~~~~--~~~~iiv~NK~Dl~~~~~--------~~~~~~~~~~~  148 (192)
T cd01889          81 LIRTIIGGAQIIDLMLLVVDATKGIQTQTA-ECLV-IGEIL--CKKLIVVLNKIDLIPEEE--------RERKIEKMKKK  148 (192)
T ss_pred             HHHHHHHHHhhCCEEEEEEECCCCccHHHH-HHHH-HHHHc--CCCEEEEEECcccCCHHH--------HHHHHHHHHHH
Confidence            544433445678999999999986554443 2221 22222  679999999999864221        0011222222 


Q ss_pred             HHHH-----hCCCceEEeccCCCCCHHHHHHHHHHHHcCC
Q 036449          146 LRKL-----IGAPAYIECSSKTQQNVKAVFDAAIRVVLQP  180 (197)
Q Consensus       146 ~~~~-----~~~~~~~~~sa~~~~~i~~l~~~i~~~~~~~  180 (197)
                      +...     ....+++++||++|.|++++++.+..++.-+
T Consensus       149 l~~~~~~~~~~~~~vi~iSa~~g~gi~~L~~~l~~~~~~~  188 (192)
T cd01889         149 LQKTLEKTRFKNSPIIPVSAKPGGGEAELGKDLNNLIVLP  188 (192)
T ss_pred             HHHHHHhcCcCCCCEEEEeccCCCCHHHHHHHHHhccccc
Confidence            1111     1223799999999999999999999887643

SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and euk

>PRK15467 ethanolamine utilization protein EutP; Provisional

Probab=99.89  E-value=1.8e-22  Score=137.86  Aligned_cols=142  Identities=22%  Similarity=0.168  Sum_probs=97.9

Q ss_pred             EEEEEcCCCCCHHHHHHHHhhCCCCCCCCCceeeeeeEEEEECCeEEEEEEEeCCCccccc----cccccCcCCCcEEEE
Q 036449            8 KCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQEDYN----RLRPLSYRGADVFIL   83 (197)
Q Consensus         8 ~i~v~G~~~~GKstli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~----~~~~~~~~~~~~~i~   83 (197)
                      +|+++|.+|+|||||++++.+.....  ..+      ....+...    .+||+||.....    ......+..+|++++
T Consensus         3 ~i~~iG~~~~GKstl~~~l~~~~~~~--~~~------~~v~~~~~----~~iDtpG~~~~~~~~~~~~~~~~~~ad~il~   70 (158)
T PRK15467          3 RIAFVGAVGAGKTTLFNALQGNYTLA--RKT------QAVEFNDK----GDIDTPGEYFSHPRWYHALITTLQDVDMLIY   70 (158)
T ss_pred             EEEEECCCCCCHHHHHHHHcCCCccC--ccc------eEEEECCC----CcccCCccccCCHHHHHHHHHHHhcCCEEEE
Confidence            79999999999999999977543111  111      11222222    269999973221    111223678999999


Q ss_pred             EEeCCCchhHHHHHHHHHHHHhhhCCCCCEEEEeeCCcccCCcccccCCCCCCcccHHHHHHHHHHhCC-CceEEeccCC
Q 036449           84 AFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPISTAQGEELRKLIGA-PAYIECSSKT  162 (197)
Q Consensus        84 v~d~~~~~s~~~~~~~~~~~i~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~sa~~  162 (197)
                      |+|+++.+++..   .|+..+   ..+.|+++++||+|+.+.             ..+...+++...+. .+++++||++
T Consensus        71 v~d~~~~~s~~~---~~~~~~---~~~~~ii~v~nK~Dl~~~-------------~~~~~~~~~~~~~~~~p~~~~Sa~~  131 (158)
T PRK15467         71 VHGANDPESRLP---AGLLDI---GVSKRQIAVISKTDMPDA-------------DVAATRKLLLETGFEEPIFELNSHD  131 (158)
T ss_pred             EEeCCCcccccC---HHHHhc---cCCCCeEEEEEccccCcc-------------cHHHHHHHHHHcCCCCCEEEEECCC
Confidence            999998876532   232222   236799999999998542             23455666667764 3899999999


Q ss_pred             CCCHHHHHHHHHHHHcCC
Q 036449          163 QQNVKAVFDAAIRVVLQP  180 (197)
Q Consensus       163 ~~~i~~l~~~i~~~~~~~  180 (197)
                      +.|++++|+.+.+.+.+.
T Consensus       132 g~gi~~l~~~l~~~~~~~  149 (158)
T PRK15467        132 PQSVQQLVDYLASLTKQE  149 (158)
T ss_pred             ccCHHHHHHHHHHhchhh
Confidence            999999999998877554

>KOG1673 consensus Ras GTPases [General function prediction only]

Probab=99.89  E-value=1.9e-22  Score=131.15  Aligned_cols=169  Identities=25%  Similarity=0.518  Sum_probs=141.0

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHhhCCCCCCCCCceeeee-eEEEEECCeEEEEEEEeCCCccccccccccCcCCCcEEEEE
Q 036449            6 FIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNF-SANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILA   84 (197)
Q Consensus         6 ~~~i~v~G~~~~GKstli~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v   84 (197)
                      .++|.++|.+..|||||+-++.++.+.+.+..+.+..+ .+.+.+.+..+.+.+||.+|++++..+.+....++-+++++
T Consensus        20 slkv~llGD~qiGKTs~mvkYV~~~~de~~~q~~GvN~mdkt~~i~~t~IsfSIwdlgG~~~~~n~lPiac~dsvaIlFm   99 (205)
T KOG1673|consen   20 SLKVGLLGDAQIGKTSLMVKYVQNEYDEEYTQTLGVNFMDKTVSIRGTDISFSIWDLGGQREFINMLPIACKDSVAILFM   99 (205)
T ss_pred             EEEEEeecccccCceeeehhhhcchhHHHHHHHhCccceeeEEEecceEEEEEEEecCCcHhhhccCceeecCcEEEEEE
Confidence            48999999999999999999999998877777776555 56788899999999999999999999999999999999999


Q ss_pred             EeCCCchhHHHHHHHHHHHHhhhCCCCCEEEEeeCCcccCCcccccCCCCCCcccHHHHHHHHHHhCCCceEEeccCCCC
Q 036449           85 FSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQQ  164 (197)
Q Consensus        85 ~d~~~~~s~~~~~~~~~~~i~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~  164 (197)
                      +|++.++++..+ ..|+..-+....-..-|+||+|.|+.-.-.     ++..+....+++.+++-+++ +.+.||+...-
T Consensus       100 FDLt~r~TLnSi-~~WY~QAr~~NktAiPilvGTKyD~fi~lp-----~e~Q~~I~~qar~YAk~mnA-sL~F~Sts~sI  172 (205)
T KOG1673|consen  100 FDLTRRSTLNSI-KEWYRQARGLNKTAIPILVGTKYDLFIDLP-----PELQETISRQARKYAKVMNA-SLFFCSTSHSI  172 (205)
T ss_pred             EecCchHHHHHH-HHHHHHHhccCCccceEEeccchHhhhcCC-----HHHHHHHHHHHHHHHHHhCC-cEEEeeccccc
Confidence            999999999999 788888776653333367799999743211     11122334578899999999 89999999999


Q ss_pred             CHHHHHHHHHHHHcCCC
Q 036449          165 NVKAVFDAAIRVVLQPP  181 (197)
Q Consensus       165 ~i~~l~~~i~~~~~~~~  181 (197)
                      |+..+|.-+...+.+-+
T Consensus       173 Nv~KIFK~vlAklFnL~  189 (205)
T KOG1673|consen  173 NVQKIFKIVLAKLFNLP  189 (205)
T ss_pred             cHHHHHHHHHHHHhCCc
Confidence            99999999998887754

>PRK00089 era GTPase Era; Reviewed

Probab=99.89  E-value=3e-22  Score=149.86  Aligned_cols=161  Identities=22%  Similarity=0.231  Sum_probs=110.2

Q ss_pred             ceeEEEEEcCCCCCHHHHHHHHhhCCCC--CCCCCceeeeeeEEEEECCeEEEEEEEeCCCccccc--------cccccC
Q 036449            5 RFIKCVTVGDGAVGKTCLLISYTSNTFP--TDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQEDYN--------RLRPLS   74 (197)
Q Consensus         5 ~~~~i~v~G~~~~GKstli~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~--------~~~~~~   74 (197)
                      +.-.|+++|.+|||||||++++.+....  ...+.|+..........++  .++.+|||||.....        ......
T Consensus         4 ~~g~V~iiG~pn~GKSTLin~L~g~~~~~vs~~~~tt~~~i~~i~~~~~--~qi~~iDTPG~~~~~~~l~~~~~~~~~~~   81 (292)
T PRK00089          4 KSGFVAIVGRPNVGKSTLLNALVGQKISIVSPKPQTTRHRIRGIVTEDD--AQIIFVDTPGIHKPKRALNRAMNKAAWSS   81 (292)
T ss_pred             eeEEEEEECCCCCCHHHHHHHHhCCceeecCCCCCcccccEEEEEEcCC--ceEEEEECCCCCCchhHHHHHHHHHHHHH
Confidence            4567999999999999999999987653  2223333322222222232  678899999964322        122335


Q ss_pred             cCCCcEEEEEEeCCCchhHHHHHHHHHHHHhhhCCCCCEEEEeeCCcccCCcccccCCCCCCcccHHHHHHHHHHhCCCc
Q 036449           75 YRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPISTAQGEELRKLIGAPA  154 (197)
Q Consensus        75 ~~~~~~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  154 (197)
                      +..+|++++|+|++++.+.  ....+...+...  +.|+++|+||+|+.....          ........+.+..+..+
T Consensus        82 ~~~~D~il~vvd~~~~~~~--~~~~i~~~l~~~--~~pvilVlNKiDl~~~~~----------~l~~~~~~l~~~~~~~~  147 (292)
T PRK00089         82 LKDVDLVLFVVDADEKIGP--GDEFILEKLKKV--KTPVILVLNKIDLVKDKE----------ELLPLLEELSELMDFAE  147 (292)
T ss_pred             HhcCCEEEEEEeCCCCCCh--hHHHHHHHHhhc--CCCEEEEEECCcCCCCHH----------HHHHHHHHHHhhCCCCe
Confidence            6789999999999984322  113344444432  689999999999974321          22344556666566568


Q ss_pred             eEEeccCCCCCHHHHHHHHHHHHcCCC
Q 036449          155 YIECSSKTQQNVKAVFDAAIRVVLQPP  181 (197)
Q Consensus       155 ~~~~sa~~~~~i~~l~~~i~~~~~~~~  181 (197)
                      ++++||+++.|++++++++.+.+...+
T Consensus       148 i~~iSA~~~~gv~~L~~~L~~~l~~~~  174 (292)
T PRK00089        148 IVPISALKGDNVDELLDVIAKYLPEGP  174 (292)
T ss_pred             EEEecCCCCCCHHHHHHHHHHhCCCCC
Confidence            999999999999999999999886543

>cd04105 SR_beta Signal recognition particle receptor, beta subunit (SR-beta)

Probab=99.89  E-value=1.1e-22  Score=144.23  Aligned_cols=118  Identities=14%  Similarity=0.189  Sum_probs=89.3

Q ss_pred             EEEEEcCCCCCHHHHHHHHhhCCCCCCCCCceeeeeeEEEEECCeEEEEEEEeCCCccccccccccCcCCC-cEEEEEEe
Q 036449            8 KCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGA-DVFILAFS   86 (197)
Q Consensus         8 ~i~v~G~~~~GKstli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~-~~~i~v~d   86 (197)
                      +|+++|++|||||||+++|..+.+...+.++............+....+.+||+||+.+++..+..++..+ +++|+|+|
T Consensus         2 ~vll~G~~~sGKTsL~~~l~~~~~~~t~~s~~~~~~~~~~~~~~~~~~~~l~D~pG~~~~~~~~~~~~~~~~~~vV~VvD   81 (203)
T cd04105           2 TVLLLGPSDSGKTALFTKLTTGKYRSTVTSIEPNVATFILNSEGKGKKFRLVDVPGHPKLRDKLLETLKNSAKGIVFVVD   81 (203)
T ss_pred             eEEEEcCCCCCHHHHHHHHhcCCCCCccCcEeecceEEEeecCCCCceEEEEECCCCHHHHHHHHHHHhccCCEEEEEEE
Confidence            68999999999999999999988776655543222221121113346788999999999988888888888 99999999


Q ss_pred             CCCc-hhHHHHHHHHHHHHhhh---CCCCCEEEEeeCCcccCC
Q 036449           87 LISK-ASYENVSKKWIPELKHY---APGVPIILVGTKLDLRDD  125 (197)
Q Consensus        87 ~~~~-~s~~~~~~~~~~~i~~~---~~~~~~ivv~nK~D~~~~  125 (197)
                      .++. .++.++...++..+...   .+++|+++++||+|+...
T Consensus        82 ~~~~~~~~~~~~~~l~~il~~~~~~~~~~pvliv~NK~Dl~~a  124 (203)
T cd04105          82 SATFQKNLKDVAEFLYDILTDLEKVKNKIPVLIACNKQDLFTA  124 (203)
T ss_pred             CccchhHHHHHHHHHHHHHHHHhhccCCCCEEEEecchhhccc
Confidence            9998 67777645555544432   268999999999998653

SR-beta and SR-alpha form the heterodimeric signal recognition particle (SRP or SR) receptor that binds SRP to regulate protein translocation across the ER membrane. Nascent polypeptide chains are synthesized with an N-terminal hydrophobic signal sequence that binds SRP54, a component of the SRP. SRP directs targeting of the ribosome-nascent chain complex (RNC) to the ER membrane via interaction with the SR, which is localized to the ER membrane. The RNC is then transferred to the protein-conducting channel, or translocon, which facilitates polypeptide translation across the ER membrane or integration into the ER membrane. SR-beta is found only in eukaryotes; it is believed to control the release of the signal sequence from SRP54 upon binding of the ribosome to the translocon. High expression of SR-beta has been observed in human colon cancer, suggesting it may play a role in the development of this typ

>PRK00454 engB GTP-binding protein YsxC; Reviewed

Probab=99.89  E-value=6.7e-22  Score=139.89  Aligned_cols=162  Identities=19%  Similarity=0.140  Sum_probs=104.1

Q ss_pred             CCceeEEEEEcCCCCCHHHHHHHHhhCCCCCCCCCceeeeeeEEEEECCeEEEEEEEeCCCcc----------ccccccc
Q 036449            3 ASRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQE----------DYNRLRP   72 (197)
Q Consensus         3 ~~~~~~i~v~G~~~~GKstli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~----------~~~~~~~   72 (197)
                      +...++|+++|.+|+|||||++++.+..+...+.++.+..........  ...+.+||+||..          .+.....
T Consensus        21 ~~~~~~v~ivG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~~--~~~l~l~DtpG~~~~~~~~~~~~~~~~~~~   98 (196)
T PRK00454         21 PDDGPEIAFAGRSNVGKSSLINALTNRKNLARTSKTPGRTQLINFFEV--NDKLRLVDLPGYGYAKVSKEEKEKWQKLIE   98 (196)
T ss_pred             CCCCCEEEEEcCCCCCHHHHHHHHhCCCCcccccCCCCceeEEEEEec--CCeEEEeCCCCCCCcCCCchHHHHHHHHHH
Confidence            456689999999999999999999987654444444432222211111  2568899999952          2222223


Q ss_pred             cCcC---CCcEEEEEEeCCCchhHHHHHHHHHHHHhhhCCCCCEEEEeeCCcccCCcccccCCCCCCcccHHHHHHHHHH
Q 036449           73 LSYR---GADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPISTAQGEELRKL  149 (197)
Q Consensus        73 ~~~~---~~~~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~  149 (197)
                      .++.   ..+++++++|.+++.+....  .+...+...  +.|+++++||+|+.+...        .....+.+......
T Consensus        99 ~~~~~~~~~~~~~~v~d~~~~~~~~~~--~i~~~l~~~--~~~~iiv~nK~Dl~~~~~--------~~~~~~~i~~~l~~  166 (196)
T PRK00454         99 EYLRTRENLKGVVLLIDSRHPLKELDL--QMIEWLKEY--GIPVLIVLTKADKLKKGE--------RKKQLKKVRKALKF  166 (196)
T ss_pred             HHHHhCccceEEEEEEecCCCCCHHHH--HHHHHHHHc--CCcEEEEEECcccCCHHH--------HHHHHHHHHHHHHh
Confidence            3333   34678889998876544332  233334333  689999999999965321        00112223333333


Q ss_pred             hCCCceEEeccCCCCCHHHHHHHHHHHHcC
Q 036449          150 IGAPAYIECSSKTQQNVKAVFDAAIRVVLQ  179 (197)
Q Consensus       150 ~~~~~~~~~sa~~~~~i~~l~~~i~~~~~~  179 (197)
                      ... +++++||+++.|++++++.|.+.+.+
T Consensus       167 ~~~-~~~~~Sa~~~~gi~~l~~~i~~~~~~  195 (196)
T PRK00454        167 GDD-EVILFSSLKKQGIDELRAAIAKWLAE  195 (196)
T ss_pred             cCC-ceEEEEcCCCCCHHHHHHHHHHHhcC
Confidence            344 89999999999999999999887653

>CHL00189 infB translation initiation factor 2; Provisional

Probab=99.89  E-value=4.1e-22  Score=162.23  Aligned_cols=161  Identities=17%  Similarity=0.228  Sum_probs=111.1

Q ss_pred             CceeEEEEEcCCCCCHHHHHHHHhhCCCCCCCCCcee---eeeeEEEEECCeEEEEEEEeCCCccccccccccCcCCCcE
Q 036449            4 SRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVF---DNFSANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGADV   80 (197)
Q Consensus         4 ~~~~~i~v~G~~~~GKstli~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~   80 (197)
                      .+..+|+++|+.++|||||++++....+.....+...   ..+......++....+.||||||++.|..++..++..+|+
T Consensus       242 ~r~p~V~IvGhvdvGKTSLld~L~~~~~~~~e~~GiTq~i~~~~v~~~~~~~~~kItfiDTPGhe~F~~mr~rg~~~aDi  321 (742)
T CHL00189        242 NRPPIVTILGHVDHGKTTLLDKIRKTQIAQKEAGGITQKIGAYEVEFEYKDENQKIVFLDTPGHEAFSSMRSRGANVTDI  321 (742)
T ss_pred             ccCCEEEEECCCCCCHHHHHHHHHhccCccccCCccccccceEEEEEEecCCceEEEEEECCcHHHHHHHHHHHHHHCCE
Confidence            3667999999999999999999998776544332221   1222223333445788999999999999999889999999


Q ss_pred             EEEEEeCCCchhHHHHHHHHHHHHhhhCCCCCEEEEeeCCcccCCcccccCCCCCCcccHHHHHH---HHHHhC-CCceE
Q 036449           81 FILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPISTAQGEE---LRKLIG-APAYI  156 (197)
Q Consensus        81 ~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~-~~~~~  156 (197)
                      +|+|+|++++...+.. .. +..+..  .++|+++++||+|+.....         .....+...   +...++ ..+++
T Consensus       322 aILVVDA~dGv~~QT~-E~-I~~~k~--~~iPiIVViNKiDl~~~~~---------e~v~~eL~~~~ll~e~~g~~vpvv  388 (742)
T CHL00189        322 AILIIAADDGVKPQTI-EA-INYIQA--ANVPIIVAINKIDKANANT---------ERIKQQLAKYNLIPEKWGGDTPMI  388 (742)
T ss_pred             EEEEEECcCCCChhhH-HH-HHHHHh--cCceEEEEEECCCccccCH---------HHHHHHHHHhccchHhhCCCceEE
Confidence            9999999886433332 11 222322  3789999999999965321         000011111   122233 24799


Q ss_pred             EeccCCCCCHHHHHHHHHHHH
Q 036449          157 ECSSKTQQNVKAVFDAAIRVV  177 (197)
Q Consensus       157 ~~sa~~~~~i~~l~~~i~~~~  177 (197)
                      ++||++|.|++++++.|....
T Consensus       389 ~VSAktG~GIdeLle~I~~l~  409 (742)
T CHL00189        389 PISASQGTNIDKLLETILLLA  409 (742)
T ss_pred             EEECCCCCCHHHHHHhhhhhh
Confidence            999999999999999998764

>PRK00093 GTP-binding protein Der; Reviewed

Probab=99.89  E-value=5.5e-22  Score=156.10  Aligned_cols=150  Identities=22%  Similarity=0.215  Sum_probs=108.5

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhhCCC--CCCCCCceeeeeeEEEEECCeEEEEEEEeCCCccc--------cccccccCcC
Q 036449            7 IKCVTVGDGAVGKTCLLISYTSNTF--PTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQED--------YNRLRPLSYR   76 (197)
Q Consensus         7 ~~i~v~G~~~~GKstli~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~--------~~~~~~~~~~   76 (197)
                      .+|+++|.+|||||||++++.+...  .....+++.+.......+++  ..+.+|||||++.        +......++.
T Consensus         2 ~~I~ivG~~~vGKStL~n~l~~~~~~~v~~~~~~t~d~~~~~~~~~~--~~~~liDT~G~~~~~~~~~~~~~~~~~~~~~   79 (435)
T PRK00093          2 PVVAIVGRPNVGKSTLFNRLTGKRDAIVADTPGVTRDRIYGEAEWLG--REFILIDTGGIEPDDDGFEKQIREQAELAIE   79 (435)
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCCceeeCCCCCCcccceEEEEEECC--cEEEEEECCCCCCcchhHHHHHHHHHHHHHH
Confidence            5899999999999999999997663  44555555555555566666  6788999999876        2222344678


Q ss_pred             CCcEEEEEEeCCCchhHHHHHHHHHHHHhhhCCCCCEEEEeeCCcccCCcccccCCCCCCcccHHHHHHHHHHhCCCceE
Q 036449           77 GADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPISTAQGEELRKLIGAPAYI  156 (197)
Q Consensus        77 ~~~~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  156 (197)
                      .+|++++|+|.+++.+..+.  .+...++..  +.|+++|+||+|+...              .+...++ ...+...++
T Consensus        80 ~ad~il~vvd~~~~~~~~~~--~~~~~l~~~--~~piilv~NK~D~~~~--------------~~~~~~~-~~lg~~~~~  140 (435)
T PRK00093         80 EADVILFVVDGRAGLTPADE--EIAKILRKS--NKPVILVVNKVDGPDE--------------EADAYEF-YSLGLGEPY  140 (435)
T ss_pred             hCCEEEEEEECCCCCCHHHH--HHHHHHHHc--CCcEEEEEECccCccc--------------hhhHHHH-HhcCCCCCE
Confidence            89999999999886554332  333444444  7899999999996431              1222233 345654689


Q ss_pred             EeccCCCCCHHHHHHHHHHHH
Q 036449          157 ECSSKTQQNVKAVFDAAIRVV  177 (197)
Q Consensus       157 ~~sa~~~~~i~~l~~~i~~~~  177 (197)
                      ++||++|.|++++++.+.+..
T Consensus       141 ~iSa~~g~gv~~l~~~I~~~~  161 (435)
T PRK00093        141 PISAEHGRGIGDLLDAILEEL  161 (435)
T ss_pred             EEEeeCCCCHHHHHHHHHhhC
Confidence            999999999999999998844

>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA

Probab=99.89  E-value=6.6e-22  Score=155.47  Aligned_cols=152  Identities=22%  Similarity=0.245  Sum_probs=111.7

Q ss_pred             EEEEEcCCCCCHHHHHHHHhhCCC--CCCCCCceeeeeeEEEEECCeEEEEEEEeCCCcc--------ccccccccCcCC
Q 036449            8 KCVTVGDGAVGKTCLLISYTSNTF--PTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQE--------DYNRLRPLSYRG   77 (197)
Q Consensus         8 ~i~v~G~~~~GKstli~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~--------~~~~~~~~~~~~   77 (197)
                      +|+++|.+|||||||++++.+...  ...+.+++.+.......+++  ..+.+|||||..        .+......++..
T Consensus         1 ~i~ivG~~nvGKStL~n~l~~~~~~~v~~~~g~t~d~~~~~~~~~~--~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~   78 (429)
T TIGR03594         1 VVAIVGRPNVGKSTLFNRLTGKRDAIVSDTPGVTRDRKYGDAEWGG--REFILIDTGGIEEDDDGLDKQIREQAEIAIEE   78 (429)
T ss_pred             CEEEECCCCCCHHHHHHHHhCCCcceecCCCCcccCceEEEEEECC--eEEEEEECCCCCCcchhHHHHHHHHHHHHHhh
Confidence            589999999999999999998653  34455555555555566666  457899999963        333445557789


Q ss_pred             CcEEEEEEeCCCchhHHHHHHHHHHHHhhhCCCCCEEEEeeCCcccCCcccccCCCCCCcccHHHHHHHHHHhCCCceEE
Q 036449           78 ADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPISTAQGEELRKLIGAPAYIE  157 (197)
Q Consensus        78 ~~~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  157 (197)
                      +|++++|+|..++.+..+.  .+...++..  +.|+++|+||+|+.....              ...+ ....+..++++
T Consensus        79 ad~vl~vvD~~~~~~~~d~--~i~~~l~~~--~~piilVvNK~D~~~~~~--------------~~~~-~~~lg~~~~~~  139 (429)
T TIGR03594        79 ADVILFVVDGREGLTPEDE--EIAKWLRKS--GKPVILVANKIDGKKEDA--------------VAAE-FYSLGFGEPIP  139 (429)
T ss_pred             CCEEEEEEeCCCCCCHHHH--HHHHHHHHh--CCCEEEEEECccCCcccc--------------cHHH-HHhcCCCCeEE
Confidence            9999999999886555442  344555544  789999999999865321              1122 23556667999


Q ss_pred             eccCCCCCHHHHHHHHHHHHcCC
Q 036449          158 CSSKTQQNVKAVFDAAIRVVLQP  180 (197)
Q Consensus       158 ~sa~~~~~i~~l~~~i~~~~~~~  180 (197)
                      +||++|.|+.++++.+.+.+...
T Consensus       140 vSa~~g~gv~~ll~~i~~~l~~~  162 (429)
T TIGR03594       140 ISAEHGRGIGDLLDAILELLPEE  162 (429)
T ss_pred             EeCCcCCChHHHHHHHHHhcCcc
Confidence            99999999999999999887553

EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.

>PRK12297 obgE GTPase CgtA; Reviewed

Probab=99.89  E-value=2.1e-21  Score=150.02  Aligned_cols=157  Identities=22%  Similarity=0.218  Sum_probs=110.5

Q ss_pred             EEEEEcCCCCCHHHHHHHHhhCCC-CCCCCCceeeeeeEEEEECCeEEEEEEEeCCCcccc----ccccccC---cCCCc
Q 036449            8 KCVTVGDGAVGKTCLLISYTSNTF-PTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQEDY----NRLRPLS---YRGAD   79 (197)
Q Consensus         8 ~i~v~G~~~~GKstli~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~----~~~~~~~---~~~~~   79 (197)
                      .|+++|.++||||||++++..... ...++.|+.......+.+++ ...+.+||+||...-    ..+...+   +..++
T Consensus       160 dVglVG~pNaGKSTLLn~Lt~ak~kIa~ypfTTl~PnlG~v~~~~-~~~~~laD~PGliega~~~~gLg~~fLrhier~~  238 (424)
T PRK12297        160 DVGLVGFPNVGKSTLLSVVSNAKPKIANYHFTTLVPNLGVVETDD-GRSFVMADIPGLIEGASEGVGLGHQFLRHIERTR  238 (424)
T ss_pred             cEEEEcCCCCCHHHHHHHHHcCCCccccCCcceeceEEEEEEEeC-CceEEEEECCCCcccccccchHHHHHHHHHhhCC
Confidence            799999999999999999997653 23444444322222233331 256889999996421    1122223   45689


Q ss_pred             EEEEEEeCCCc---hhHHHHHHHHHHHHhhhC---CCCCEEEEeeCCcccCCcccccCCCCCCcccHHHHHHHHHHhCCC
Q 036449           80 VFILAFSLISK---ASYENVSKKWIPELKHYA---PGVPIILVGTKLDLRDDKQFFIDHPGAVPISTAQGEELRKLIGAP  153 (197)
Q Consensus        80 ~~i~v~d~~~~---~s~~~~~~~~~~~i~~~~---~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  153 (197)
                      ++++|+|+++.   +.+++. ..|...+....   .+.|++||+||+|+...              .+....+.+.++. 
T Consensus       239 llI~VID~s~~~~~dp~e~~-~~i~~EL~~y~~~L~~kP~IVV~NK~DL~~~--------------~e~l~~l~~~l~~-  302 (424)
T PRK12297        239 VIVHVIDMSGSEGRDPIEDY-EKINKELKLYNPRLLERPQIVVANKMDLPEA--------------EENLEEFKEKLGP-  302 (424)
T ss_pred             EEEEEEeCCccccCChHHHH-HHHHHHHhhhchhccCCcEEEEEeCCCCcCC--------------HHHHHHHHHHhCC-
Confidence            99999999865   556665 67777777654   37899999999998321              2334556666664 


Q ss_pred             ceEEeccCCCCCHHHHHHHHHHHHcCCC
Q 036449          154 AYIECSSKTQQNVKAVFDAAIRVVLQPP  181 (197)
Q Consensus       154 ~~~~~sa~~~~~i~~l~~~i~~~~~~~~  181 (197)
                      +++++||+++.|+++++++|.+.+...+
T Consensus       303 ~i~~iSA~tgeGI~eL~~~L~~~l~~~~  330 (424)
T PRK12297        303 KVFPISALTGQGLDELLYAVAELLEETP  330 (424)
T ss_pred             cEEEEeCCCCCCHHHHHHHHHHHHHhCc
Confidence            8999999999999999999999876654

>TIGR03598 GTPase_YsxC ribosome biogenesis GTP-binding protein YsxC/EngB

Probab=99.88  E-value=3.5e-22  Score=139.38  Aligned_cols=152  Identities=17%  Similarity=0.153  Sum_probs=97.5

Q ss_pred             CCCCceeEEEEEcCCCCCHHHHHHHHhhCCCCCCCCCceeeeeeEE-EEECCeEEEEEEEeCCCcc----------cccc
Q 036449            1 MSASRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSAN-VVVNGSTVNLGLWDTAGQE----------DYNR   69 (197)
Q Consensus         1 m~~~~~~~i~v~G~~~~GKstli~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~i~D~~G~~----------~~~~   69 (197)
                      |+..+.++|+++|.+|+|||||++++.+..+...+.++.+...... ...++   .+.+||+||..          .+..
T Consensus        13 ~~~~~~~~i~ivG~~~~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~liDtpG~~~~~~~~~~~~~~~~   89 (179)
T TIGR03598        13 LPPDDGPEIAFAGRSNVGKSSLINALTNRKKLARTSKTPGRTQLINFFEVND---GFRLVDLPGYGYAKVSKEEKEKWQK   89 (179)
T ss_pred             CCCCCCCEEEEEcCCCCCHHHHHHHHhCCCCcccccCCCCcceEEEEEEeCC---cEEEEeCCCCccccCChhHHHHHHH
Confidence            4567889999999999999999999998764333333333222211 22232   47799999952          2222


Q ss_pred             ccccCcC---CCcEEEEEEeCCCchhHHHHHHHHHHHHhhhCCCCCEEEEeeCCcccCCcccccCCCCCCcccHHHHHHH
Q 036449           70 LRPLSYR---GADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPISTAQGEEL  146 (197)
Q Consensus        70 ~~~~~~~---~~~~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~  146 (197)
                      +...++.   .++++++|+|.+++.+..+.  .++..+...  +.|+++++||+|+.....        .....++.++.
T Consensus        90 ~~~~~l~~~~~~~~ii~vvd~~~~~~~~~~--~~~~~~~~~--~~pviiv~nK~D~~~~~~--------~~~~~~~i~~~  157 (179)
T TIGR03598        90 LIEEYLEKRENLKGVVLLMDIRHPLKELDL--EMLEWLRER--GIPVLIVLTKADKLKKSE--------LNKQLKKIKKA  157 (179)
T ss_pred             HHHHHHHhChhhcEEEEEecCCCCCCHHHH--HHHHHHHHc--CCCEEEEEECcccCCHHH--------HHHHHHHHHHH
Confidence            2223333   45799999999886555544  334444444  789999999999964321        01223444444


Q ss_pred             HHHhCC-CceEEeccCCCCCHH
Q 036449          147 RKLIGA-PAYIECSSKTQQNVK  167 (197)
Q Consensus       147 ~~~~~~-~~~~~~sa~~~~~i~  167 (197)
                      ....+. ..++++||++|+|++
T Consensus       158 l~~~~~~~~v~~~Sa~~g~gi~  179 (179)
T TIGR03598       158 LKKDADDPSVQLFSSLKKTGID  179 (179)
T ss_pred             HhhccCCCceEEEECCCCCCCC
Confidence            444432 279999999999873

Members of this protein family are a GTPase associated with ribosome biogenesis, typified by YsxC from Bacillus subutilis. The family is widely but not universally distributed among bacteria. Members commonly are called EngB based on homology to EngA, one of several other GTPases of ribosome biogenesis. Cutoffs as set find essentially all bacterial members, but also identify large numbers of eukaryotic (probably organellar) sequences. This protein is found in about 80 percent of bacterial genomes.

>cd01888 eIF2_gamma eIF2-gamma (gamma subunit of initiation factor 2)

Probab=99.88  E-value=6.1e-22  Score=140.63  Aligned_cols=163  Identities=18%  Similarity=0.168  Sum_probs=101.2

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhhCCCCC---C--CCCceeeee-eEEEE-----------------------EC--C----
Q 036449            7 IKCVTVGDGAVGKTCLLISYTSNTFPT---D--YVPTVFDNF-SANVV-----------------------VN--G----   51 (197)
Q Consensus         7 ~~i~v~G~~~~GKstli~~~~~~~~~~---~--~~~~~~~~~-~~~~~-----------------------~~--~----   51 (197)
                      ++|+++|+.|+|||||+..+.......   +  ...+....+ .....                       ..  +    
T Consensus         1 ~~i~~~g~~~~GKttL~~~l~~~~~~~~~~e~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (203)
T cd01888           1 INIGTIGHVAHGKSTLVKALSGVWTVRFKEELERNITIKLGYANAKIYKCPNCGCPRPYCYRSKEDSPECECPGCGGETK   80 (203)
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCCCCCCCeeEEcCCceeecccccccccccCcCCCCccccccccccccccccccCCccc
Confidence            579999999999999999986542111   0  000000000 00000                       00  1    


Q ss_pred             eEEEEEEEeCCCccccccccccCcCCCcEEEEEEeCCCchhHHHHHHHHHHHHhhhCCCCCEEEEeeCCcccCCcccccC
Q 036449           52 STVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLRDDKQFFID  131 (197)
Q Consensus        52 ~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~~~ivv~nK~D~~~~~~~~~~  131 (197)
                      ....+.||||||++.|...+...+..+|++++|+|++++...... ...+..+... ...|+++|+||+|+.....    
T Consensus        81 ~~~~i~~iDtPG~~~~~~~~~~~~~~~D~~llVvd~~~~~~~~~t-~~~l~~~~~~-~~~~iiivvNK~Dl~~~~~----  154 (203)
T cd01888          81 LVRHVSFVDCPGHEILMATMLSGAAVMDGALLLIAANEPCPQPQT-SEHLAALEIM-GLKHIIIVQNKIDLVKEEQ----  154 (203)
T ss_pred             cccEEEEEECCChHHHHHHHHHhhhcCCEEEEEEECCCCCCCcch-HHHHHHHHHc-CCCcEEEEEEchhccCHHH----
Confidence            125788999999999888777788899999999999874211111 1122222222 1347999999999965321    


Q ss_pred             CCCCCcccHHHHHHHHHHh---CCCceEEeccCCCCCHHHHHHHHHHHHcCC
Q 036449          132 HPGAVPISTAQGEELRKLI---GAPAYIECSSKTQQNVKAVFDAAIRVVLQP  180 (197)
Q Consensus       132 ~~~~~~~~~~~~~~~~~~~---~~~~~~~~sa~~~~~i~~l~~~i~~~~~~~  180 (197)
                          .....++.+++...+   +. +++++||++|.|++++|+.|.+.+..+
T Consensus       155 ----~~~~~~~i~~~~~~~~~~~~-~i~~vSA~~g~gi~~L~~~l~~~l~~~  201 (203)
T cd01888         155 ----ALENYEQIKKFVKGTIAENA-PIIPISAQLKYNIDVLLEYIVKKIPTP  201 (203)
T ss_pred             ----HHHHHHHHHHHHhccccCCC-cEEEEeCCCCCCHHHHHHHHHHhCCCC
Confidence                001123333444332   33 799999999999999999999877653

eIF2 is a heterotrimeric translation initiation factor that consists of alpha, beta, and gamma subunits. The GTP-bound gamma subunit also binds initiator methionyl-tRNA and delivers it to the 40S ribosomal subunit. Following hydrolysis of GTP to GDP, eIF2:GDP is released from the ribosome. The gamma subunit has no intrinsic GTPase activity, but is stimulated by the GTPase activating protein (GAP) eIF5, and GDP/GTP exchange is stimulated by the guanine nucleotide exchange factor (GEF) eIF2B. eIF2B is a heteropentamer, and the epsilon chain binds eIF2. Both eIF5 and eIF2B-epsilon are known to bind strongly to eIF2-beta, but have also been shown to bind directly to eIF2-gamma. It is possible that eIF2-beta serves simply as a high-affinity docking site for eIF5 and eIF2B-epsilon, or that eIF2-beta serves a regulatory role. eIF2-gamma is found only in eukaryotes and archaea. It is closely related to SelB, the sel

>PF00009 GTP_EFTU: Elongation factor Tu GTP binding domain; InterPro: IPR000795 Elongation factors belong to a family of proteins that promote the GTP-dependent binding of aminoacyl tRNA to the A site of ribosomes during protein biosynthesis, and catalyse the translocation of the synthesised protein chain from the A to the P site

Probab=99.88  E-value=1.5e-21  Score=137.20  Aligned_cols=161  Identities=24%  Similarity=0.277  Sum_probs=109.5

Q ss_pred             CceeEEEEEcCCCCCHHHHHHHHhhCCCCCCC--------------------CCceeeeeeEEEEECCeEEEEEEEeCCC
Q 036449            4 SRFIKCVTVGDGAVGKTCLLISYTSNTFPTDY--------------------VPTVFDNFSANVVVNGSTVNLGLWDTAG   63 (197)
Q Consensus         4 ~~~~~i~v~G~~~~GKstli~~~~~~~~~~~~--------------------~~~~~~~~~~~~~~~~~~~~~~i~D~~G   63 (197)
                      ++.++|+++|+.++|||||+.+++........                    .-|. ...............+.++|+||
T Consensus         1 k~~~~I~i~G~~~sGKTTL~~~L~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~ti-~~~~~~~~~~~~~~~i~~iDtPG   79 (188)
T PF00009_consen    1 KNIRNIAIIGHVDSGKTTLLGALLGKAGAIDKRGIEETKNAFLDKHPEERERGITI-DLSFISFEKNENNRKITLIDTPG   79 (188)
T ss_dssp             STEEEEEEEESTTSSHHHHHHHHHHHHTSSSSHHHHHHHHCHHHSSHHHHHCTSSS-SSEEEEEEBTESSEEEEEEEESS
T ss_pred             CCEEEEEEECCCCCCcEeechhhhhhccccccccccccccccccccchhhhccccc-ccccccccccccccceeeccccc
Confidence            35789999999999999999998854321110                    0000 00111122013346788999999


Q ss_pred             ccccccccccCcCCCcEEEEEEeCCCchhHHHHHHHHHHHHhhhCCCCCEEEEeeCCcccCCcccccCCCCCCcccHHHH
Q 036449           64 QEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPISTAQG  143 (197)
Q Consensus        64 ~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~  143 (197)
                      +..|.......+..+|++|+|+|+.++.....  ...+..+...  +.|+++++||+|+...+.        .....+..
T Consensus        80 ~~~f~~~~~~~~~~~D~ailvVda~~g~~~~~--~~~l~~~~~~--~~p~ivvlNK~D~~~~~~--------~~~~~~~~  147 (188)
T PF00009_consen   80 HEDFIKEMIRGLRQADIAILVVDANDGIQPQT--EEHLKILREL--GIPIIVVLNKMDLIEKEL--------EEIIEEIK  147 (188)
T ss_dssp             SHHHHHHHHHHHTTSSEEEEEEETTTBSTHHH--HHHHHHHHHT--T-SEEEEEETCTSSHHHH--------HHHHHHHH
T ss_pred             ccceeecccceecccccceeeeeccccccccc--cccccccccc--ccceEEeeeeccchhhhH--------HHHHHHHH
Confidence            99988877778899999999999998755443  3455556555  789999999999973221        00111222


Q ss_pred             HHHHHHhCC-----CceEEeccCCCCCHHHHHHHHHHHH
Q 036449          144 EELRKLIGA-----PAYIECSSKTQQNVKAVFDAAIRVV  177 (197)
Q Consensus       144 ~~~~~~~~~-----~~~~~~sa~~~~~i~~l~~~i~~~~  177 (197)
                      ..+.+.++.     .+++++||.+|.|++++++.|.+.+
T Consensus       148 ~~l~~~~~~~~~~~~~vi~~Sa~~g~gi~~Ll~~l~~~~  186 (188)
T PF00009_consen  148 EKLLKEYGENGEEIVPVIPISALTGDGIDELLEALVELL  186 (188)
T ss_dssp             HHHHHHTTSTTTSTEEEEEEBTTTTBTHHHHHHHHHHHS
T ss_pred             HHhccccccCccccceEEEEecCCCCCHHHHHHHHHHhC
Confidence            244444433     3699999999999999999998875

The proteins are all relatively similar in the vicinity of their C-termini, and are also highly similar to a range of proteins that includes the nodulation Q protein from Rhizobium meliloti (Sinorhizobium meliloti), bacterial tetracycline resistance proteins [] and the omnipotent suppressor protein 2 from yeast. In both prokaryotes and eukaryotes, there are three distinct types of elongation factors, EF-1alpha (EF-Tu), which binds GTP and an aminoacyl-tRNAand delivers the latter to the A site of ribosomes; EF-1beta (EF-Ts), which interacts with EF-1a/EF-Tu to displace GDP and thus allows the regeneration of GTP-EF-1a; and EF-2 (EF-G), which binds GTP and peptidyl-tRNA and translocates the latter from the A site to the P site. In EF-1-alpha, a specific region has been shown [] to be involved in a conformational change mediated by the hydrolysis of GTP to GDP. This region is conserved in both EF-1alpha/EF-Tu as well as EF-2/EF-G and thus seems typical for GTP-dependent proteins which bind non-initiator tRNAs to the ribosome. The GTP-binding protein synthesis factor family also includes the eukaryotic peptide chain release factor GTP-binding subunits [] and prokaryotic peptide chain release factor 3 (RF-3) []; the prokaryotic GTP-binding protein lepA and its homologue in yeast (GUF1) and Caenorhabditis elegans (ZK1236.1); yeast HBS1 []; rat statin S1 []; and the prokaryotic selenocysteine-specific elongation factor selB [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 3IZW_C 1DG1_G 2BVN_B 3IZV_C 3MMP_C 1OB2_A 1EFU_A 3FIH_Z 3TR5_A 1TUI_C ....

>PRK05306 infB translation initiation factor IF-2; Validated

Probab=99.88  E-value=2.1e-21  Score=159.30  Aligned_cols=159  Identities=19%  Similarity=0.261  Sum_probs=109.7

Q ss_pred             CceeEEEEEcCCCCCHHHHHHHHhhCCCCCCCCCceeeee-eEEEEECCeEEEEEEEeCCCccccccccccCcCCCcEEE
Q 036449            4 SRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNF-SANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFI   82 (197)
Q Consensus         4 ~~~~~i~v~G~~~~GKstli~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i   82 (197)
                      .+...|+++|+.++|||||+++|....+.....+...... ...+.+++  ..++||||||++.|..++...+..+|++|
T Consensus       288 ~R~pvV~ImGhvd~GKTSLl~~Lr~~~v~~~e~~GIT~~iga~~v~~~~--~~ItfiDTPGhe~F~~m~~rga~~aDiaI  365 (787)
T PRK05306        288 PRPPVVTIMGHVDHGKTSLLDAIRKTNVAAGEAGGITQHIGAYQVETNG--GKITFLDTPGHEAFTAMRARGAQVTDIVV  365 (787)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHHhCCccccccCceeeeccEEEEEECC--EEEEEEECCCCccchhHHHhhhhhCCEEE
Confidence            4678999999999999999999988776554433332122 22344444  56889999999999999988899999999


Q ss_pred             EEEeCCCchhHHHHHHHHHHHHhhhCCCCCEEEEeeCCcccCCcccccCCCCCCcccHH--HHHHHHHHhC-CCceEEec
Q 036449           83 LAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPISTA--QGEELRKLIG-APAYIECS  159 (197)
Q Consensus        83 ~v~d~~~~~s~~~~~~~~~~~i~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~-~~~~~~~s  159 (197)
                      +|||++++..-+.. ..| .....  .++|+++++||+|+...+.        ..+..+  ....+...++ ..+++++|
T Consensus       366 LVVdAddGv~~qT~-e~i-~~a~~--~~vPiIVviNKiDl~~a~~--------e~V~~eL~~~~~~~e~~g~~vp~vpvS  433 (787)
T PRK05306        366 LVVAADDGVMPQTI-EAI-NHAKA--AGVPIIVAINKIDKPGANP--------DRVKQELSEYGLVPEEWGGDTIFVPVS  433 (787)
T ss_pred             EEEECCCCCCHhHH-HHH-HHHHh--cCCcEEEEEECccccccCH--------HHHHHHHHHhcccHHHhCCCceEEEEe
Confidence            99999985333322 121 22222  3799999999999964321        001111  0111223333 23799999


Q ss_pred             cCCCCCHHHHHHHHHHH
Q 036449          160 SKTQQNVKAVFDAAIRV  176 (197)
Q Consensus       160 a~~~~~i~~l~~~i~~~  176 (197)
                      |++|.|++++|++|...
T Consensus       434 AktG~GI~eLle~I~~~  450 (787)
T PRK05306        434 AKTGEGIDELLEAILLQ  450 (787)
T ss_pred             CCCCCCchHHHHhhhhh
Confidence            99999999999999764

>PRK11058 GTPase HflX; Provisional

Probab=99.88  E-value=2.8e-21  Score=150.14  Aligned_cols=156  Identities=21%  Similarity=0.186  Sum_probs=106.9

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhhCCCC-CCCCCceeeeeeEEEEECCeEEEEEEEeCCCcccc--ccccc------cCcCC
Q 036449            7 IKCVTVGDGAVGKTCLLISYTSNTFP-TDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQEDY--NRLRP------LSYRG   77 (197)
Q Consensus         7 ~~i~v~G~~~~GKstli~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~--~~~~~------~~~~~   77 (197)
                      .+|+++|.+|+|||||+|++.+.... .+...++.+.....+.+.+. ..+.+|||||..+.  ...+.      ..+..
T Consensus       198 p~ValVG~~NaGKSSLlN~Lt~~~~~v~~~~~tTld~~~~~i~l~~~-~~~~l~DTaG~~r~lp~~lve~f~~tl~~~~~  276 (426)
T PRK11058        198 PTVSLVGYTNAGKSTLFNRITEARVYAADQLFATLDPTLRRIDVADV-GETVLADTVGFIRHLPHDLVAAFKATLQETRQ  276 (426)
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCceeeccCCCCCcCCceEEEEeCCC-CeEEEEecCcccccCCHHHHHHHHHHHHHhhc
Confidence            68999999999999999999976542 23334444444444545442 24679999997332  11111      23578


Q ss_pred             CcEEEEEEeCCCchhHHHHHHHHHHHHhhhC-CCCCEEEEeeCCcccCCcccccCCCCCCcccHHHHHHHHHHhCCCceE
Q 036449           78 ADVFILAFSLISKASYENVSKKWIPELKHYA-PGVPIILVGTKLDLRDDKQFFIDHPGAVPISTAQGEELRKLIGAPAYI  156 (197)
Q Consensus        78 ~~~~i~v~d~~~~~s~~~~~~~~~~~i~~~~-~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  156 (197)
                      +|++++|+|++++.+++.+ ..|...+.... .+.|+++|+||+|+.+...           ...   . ....+...++
T Consensus       277 ADlIL~VvDaS~~~~~e~l-~~v~~iL~el~~~~~pvIiV~NKiDL~~~~~-----------~~~---~-~~~~~~~~~v  340 (426)
T PRK11058        277 ATLLLHVVDAADVRVQENI-EAVNTVLEEIDAHEIPTLLVMNKIDMLDDFE-----------PRI---D-RDEENKPIRV  340 (426)
T ss_pred             CCEEEEEEeCCCccHHHHH-HHHHHHHHHhccCCCCEEEEEEcccCCCchh-----------HHH---H-HHhcCCCceE
Confidence            9999999999999877776 44444444433 4799999999999964211           001   1 1123442358


Q ss_pred             EeccCCCCCHHHHHHHHHHHHcC
Q 036449          157 ECSSKTQQNVKAVFDAAIRVVLQ  179 (197)
Q Consensus       157 ~~sa~~~~~i~~l~~~i~~~~~~  179 (197)
                      .+||++|.|+++++++|.+.+..
T Consensus       341 ~ISAktG~GIdeL~e~I~~~l~~  363 (426)
T PRK11058        341 WLSAQTGAGIPLLFQALTERLSG  363 (426)
T ss_pred             EEeCCCCCCHHHHHHHHHHHhhh
Confidence            89999999999999999998854

>KOG0096 consensus GTPase Ran/TC4/GSP1 (nuclear protein transport pathway), small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.87  E-value=7e-22  Score=132.65  Aligned_cols=163  Identities=28%  Similarity=0.440  Sum_probs=139.7

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHhhCCCCCCCCCceeeeeeEEEEECCe-EEEEEEEeCCCccccccccccCcCCCcEEEEE
Q 036449            6 FIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGS-TVNLGLWDTAGQEDYNRLRPLSYRGADVFILA   84 (197)
Q Consensus         6 ~~~i~v~G~~~~GKstli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v   84 (197)
                      .++++++|..|.||||++++...+.|...+.+|.+..........+. .+.+..|||.|++.+..+...++-++...|++
T Consensus        10 ~fklvlvGdgg~gKtt~vkr~ltgeFe~~y~at~Gv~~~pl~f~tn~g~irf~~wdtagqEk~gglrdgyyI~~qcAiim   89 (216)
T KOG0096|consen   10 TFKLVLVGDGGTGKTTFVKRHLTGEFEKTYPATLGVEVHPLLFDTNRGQIRFNVWDTAGQEKKGGLRDGYYIQGQCAIIM   89 (216)
T ss_pred             eEEEEEecCCcccccchhhhhhcccceecccCcceeEEeeeeeecccCcEEEEeeecccceeecccccccEEecceeEEE
Confidence            68999999999999999999999999999999997666555554433 59999999999999999999999999999999


Q ss_pred             EeCCCchhHHHHHHHHHHHHhhhCCCCCEEEEeeCCcccCCcccccCCCCCCcccHHHHHHHHHHhCCCceEEeccCCCC
Q 036449           85 FSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQQ  164 (197)
Q Consensus        85 ~d~~~~~s~~~~~~~~~~~i~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~  164 (197)
                      +|++.+-++..+ ..|...+...+.++|+++.|||.|......            ......+.+..++ .|++.||+++.
T Consensus        90 FdVtsr~t~~n~-~rwhrd~~rv~~NiPiv~cGNKvDi~~r~~------------k~k~v~~~rkknl-~y~~iSaksn~  155 (216)
T KOG0096|consen   90 FDVTSRFTYKNV-PRWHRDLVRVRENIPIVLCGNKVDIKARKV------------KAKPVSFHRKKNL-QYYEISAKSNY  155 (216)
T ss_pred             eeeeehhhhhcc-hHHHHHHHHHhcCCCeeeeccceecccccc------------ccccceeeecccc-eeEEeeccccc
Confidence            999999999998 788888888888999999999999865431            1222345566666 89999999999


Q ss_pred             CHHHHHHHHHHHHcCCCc
Q 036449          165 NVKAVFDAAIRVVLQPPK  182 (197)
Q Consensus       165 ~i~~l~~~i~~~~~~~~~  182 (197)
                      |.+.-|-|+.+.+...+.
T Consensus       156 NfekPFl~LarKl~G~p~  173 (216)
T KOG0096|consen  156 NFERPFLWLARKLTGDPS  173 (216)
T ss_pred             ccccchHHHhhhhcCCCC
Confidence            999999999999877643

>PRK05433 GTP-binding protein LepA; Provisional

Probab=99.87  E-value=4.8e-21  Score=154.52  Aligned_cols=163  Identities=18%  Similarity=0.197  Sum_probs=114.2

Q ss_pred             CCCceeEEEEEcCCCCCHHHHHHHHhhCC--CCCC-----CCCc------eeeee---eEEEEE---CCeEEEEEEEeCC
Q 036449            2 SASRFIKCVTVGDGAVGKTCLLISYTSNT--FPTD-----YVPT------VFDNF---SANVVV---NGSTVNLGLWDTA   62 (197)
Q Consensus         2 ~~~~~~~i~v~G~~~~GKstli~~~~~~~--~~~~-----~~~~------~~~~~---~~~~~~---~~~~~~~~i~D~~   62 (197)
                      ...+.-+|+++|+.++|||||+.+++...  +...     +..+      .+..+   ...+.+   ++..+.+++||||
T Consensus         3 ~~~~iRNi~IiGhvd~GKTTL~~rLl~~tg~i~~~~~~~~~lD~~~~ErerGiTi~~~~v~~~~~~~dg~~~~lnLiDTP   82 (600)
T PRK05433          3 DMKNIRNFSIIAHIDHGKSTLADRLIELTGTLSEREMKAQVLDSMDLERERGITIKAQAVRLNYKAKDGETYILNLIDTP   82 (600)
T ss_pred             ccccCCEEEEECCCCCCHHHHHHHHHHhcCCCcccccccccccCchHHhhcCCcccccEEEEEEEccCCCcEEEEEEECC
Confidence            33456689999999999999999998632  2110     0000      01111   111122   4557889999999


Q ss_pred             CccccccccccCcCCCcEEEEEEeCCCchhHHHHHHHHHHHHhhhCCCCCEEEEeeCCcccCCcccccCCCCCCcccHHH
Q 036449           63 GQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPISTAQ  142 (197)
Q Consensus        63 G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~  142 (197)
                      |+.+|...+..++..+|++|+|+|++++...+.. ..|.... .  .+.|+++|+||+|+.....            ...
T Consensus        83 Gh~dF~~~v~~sl~~aD~aILVVDas~gv~~qt~-~~~~~~~-~--~~lpiIvViNKiDl~~a~~------------~~v  146 (600)
T PRK05433         83 GHVDFSYEVSRSLAACEGALLVVDASQGVEAQTL-ANVYLAL-E--NDLEIIPVLNKIDLPAADP------------ERV  146 (600)
T ss_pred             CcHHHHHHHHHHHHHCCEEEEEEECCCCCCHHHH-HHHHHHH-H--CCCCEEEEEECCCCCcccH------------HHH
Confidence            9999998888899999999999999988666554 3443332 2  3689999999999864321            122


Q ss_pred             HHHHHHHhCCC--ceEEeccCCCCCHHHHHHHHHHHHcCC
Q 036449          143 GEELRKLIGAP--AYIECSSKTQQNVKAVFDAAIRVVLQP  180 (197)
Q Consensus       143 ~~~~~~~~~~~--~~~~~sa~~~~~i~~l~~~i~~~~~~~  180 (197)
                      ..++.+..+..  .++++||++|.|+++++++|.+.+..+
T Consensus       147 ~~ei~~~lg~~~~~vi~iSAktG~GI~~Ll~~I~~~lp~P  186 (600)
T PRK05433        147 KQEIEDVIGIDASDAVLVSAKTGIGIEEVLEAIVERIPPP  186 (600)
T ss_pred             HHHHHHHhCCCcceEEEEecCCCCCHHHHHHHHHHhCccc
Confidence            23444445542  389999999999999999999987654

>COG1159 Era GTPase [General function prediction only]

Probab=99.87  E-value=7e-21  Score=137.42  Aligned_cols=164  Identities=18%  Similarity=0.189  Sum_probs=118.8

Q ss_pred             CCCceeEEEEEcCCCCCHHHHHHHHhhCCCC--CCCCCceeeeeeEEEEECCeEEEEEEEeCCCcccc--------cccc
Q 036449            2 SASRFIKCVTVGDGAVGKTCLLISYTSNTFP--TDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQEDY--------NRLR   71 (197)
Q Consensus         2 ~~~~~~~i~v~G~~~~GKstli~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~--------~~~~   71 (197)
                      ...+.--|+++|.|++|||||+|++.+.+.+  ..-+.|+........+.++  .++.++||||...-        ....
T Consensus         2 ~~~ksGfVaIiGrPNvGKSTLlN~l~G~KisIvS~k~QTTR~~I~GI~t~~~--~QiIfvDTPGih~pk~~l~~~m~~~a   79 (298)
T COG1159           2 MKFKSGFVAIIGRPNVGKSTLLNALVGQKISIVSPKPQTTRNRIRGIVTTDN--AQIIFVDTPGIHKPKHALGELMNKAA   79 (298)
T ss_pred             CCceEEEEEEEcCCCCcHHHHHHHHhcCceEeecCCcchhhhheeEEEEcCC--ceEEEEeCCCCCCcchHHHHHHHHHH
Confidence            4456678999999999999999999988763  3344555555555555554  67789999994321        2333


Q ss_pred             ccCcCCCcEEEEEEeCCCchhHHHHHHHHHHHHhhhCCCCCEEEEeeCCcccCCcccccCCCCCCcccHHHHHHHHHHhC
Q 036449           72 PLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPISTAQGEELRKLIG  151 (197)
Q Consensus        72 ~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  151 (197)
                      ...+..+|+++||+|++++....+  ...++.+...  +.|+++++||.|..+...          ........+.....
T Consensus        80 ~~sl~dvDlilfvvd~~~~~~~~d--~~il~~lk~~--~~pvil~iNKID~~~~~~----------~l~~~~~~~~~~~~  145 (298)
T COG1159          80 RSALKDVDLILFVVDADEGWGPGD--EFILEQLKKT--KTPVILVVNKIDKVKPKT----------VLLKLIAFLKKLLP  145 (298)
T ss_pred             HHHhccCcEEEEEEeccccCCccH--HHHHHHHhhc--CCCeEEEEEccccCCcHH----------HHHHHHHHHHhhCC
Confidence            456788999999999988544432  3445556552  689999999999876542          11333445555566


Q ss_pred             CCceEEeccCCCCCHHHHHHHHHHHHcCCC
Q 036449          152 APAYIECSSKTQQNVKAVFDAAIRVVLQPP  181 (197)
Q Consensus       152 ~~~~~~~sa~~~~~i~~l~~~i~~~~~~~~  181 (197)
                      ....+++||++|.|++.+.+.+...+.+.+
T Consensus       146 f~~ivpiSA~~g~n~~~L~~~i~~~Lpeg~  175 (298)
T COG1159         146 FKEIVPISALKGDNVDTLLEIIKEYLPEGP  175 (298)
T ss_pred             cceEEEeeccccCCHHHHHHHHHHhCCCCC
Confidence            667899999999999999999999887754

>PRK12296 obgE GTPase CgtA; Reviewed

Probab=99.87  E-value=5e-21  Score=149.76  Aligned_cols=160  Identities=16%  Similarity=0.128  Sum_probs=106.4

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhhCCC-CCCCCCceeeeeeEEEEECCeEEEEEEEeCCCccccc----c---ccccCcCCC
Q 036449            7 IKCVTVGDGAVGKTCLLISYTSNTF-PTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQEDYN----R---LRPLSYRGA   78 (197)
Q Consensus         7 ~~i~v~G~~~~GKstli~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~----~---~~~~~~~~~   78 (197)
                      ..|+++|.++||||||++++..... ..+++.|+.......+.+.+  ..+++||+||...-.    .   .....+..+
T Consensus       160 adV~LVG~PNAGKSTLln~Ls~akpkIadypfTTl~P~lGvv~~~~--~~f~laDtPGliegas~g~gLg~~fLrhiera  237 (500)
T PRK12296        160 ADVGLVGFPSAGKSSLISALSAAKPKIADYPFTTLVPNLGVVQAGD--TRFTVADVPGLIPGASEGKGLGLDFLRHIERC  237 (500)
T ss_pred             ceEEEEEcCCCCHHHHHHHHhcCCccccccCcccccceEEEEEECC--eEEEEEECCCCccccchhhHHHHHHHHHHHhc
Confidence            5699999999999999999987543 23455555333333444444  568899999953211    1   112235679


Q ss_pred             cEEEEEEeCCCc----hhHHHHHHHHHHHHhhh------------CCCCCEEEEeeCCcccCCcccccCCCCCCcccHHH
Q 036449           79 DVFILAFSLISK----ASYENVSKKWIPELKHY------------APGVPIILVGTKLDLRDDKQFFIDHPGAVPISTAQ  142 (197)
Q Consensus        79 ~~~i~v~d~~~~----~s~~~~~~~~~~~i~~~------------~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~  142 (197)
                      +++|+|+|+++.    ..+++. ..+...+...            ..+.|+++|+||+|+.+...          . .+.
T Consensus       238 dvLv~VVD~s~~e~~rdp~~d~-~~i~~EL~~y~~~l~~~~~~~~l~~kP~IVVlNKiDL~da~e----------l-~e~  305 (500)
T PRK12296        238 AVLVHVVDCATLEPGRDPLSDI-DALEAELAAYAPALDGDLGLGDLAERPRLVVLNKIDVPDARE----------L-AEF  305 (500)
T ss_pred             CEEEEEECCcccccccCchhhH-HHHHHHHHHhhhcccccchhhhhcCCCEEEEEECccchhhHH----------H-HHH
Confidence            999999999863    233333 3343344322            13689999999999964321          1 122


Q ss_pred             HHHHHHHhCCCceEEeccCCCCCHHHHHHHHHHHHcCCC
Q 036449          143 GEELRKLIGAPAYIECSSKTQQNVKAVFDAAIRVVLQPP  181 (197)
Q Consensus       143 ~~~~~~~~~~~~~~~~sa~~~~~i~~l~~~i~~~~~~~~  181 (197)
                      ........+. +++++||+++.|+++++.+|.+.+...+
T Consensus       306 l~~~l~~~g~-~Vf~ISA~tgeGLdEL~~~L~ell~~~r  343 (500)
T PRK12296        306 VRPELEARGW-PVFEVSAASREGLRELSFALAELVEEAR  343 (500)
T ss_pred             HHHHHHHcCC-eEEEEECCCCCCHHHHHHHHHHHHHhhh
Confidence            2222334465 8999999999999999999999886654

>TIGR00475 selB selenocysteine-specific elongation factor SelB

Probab=99.87  E-value=5.2e-21  Score=154.10  Aligned_cols=161  Identities=19%  Similarity=0.174  Sum_probs=111.3

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhhCC---CCCCCCCcee-eeeeEEEEECCeEEEEEEEeCCCccccccccccCcCCCcEEE
Q 036449            7 IKCVTVGDGAVGKTCLLISYTSNT---FPTDYVPTVF-DNFSANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFI   82 (197)
Q Consensus         7 ~~i~v~G~~~~GKstli~~~~~~~---~~~~~~~~~~-~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i   82 (197)
                      +.|+++|+.++|||||++++.+..   +..++..... +.....+..++  ..+.+||+||++.|.......+.++|+++
T Consensus         1 ~~I~iiG~~d~GKTTLi~aLtg~~~d~~~eE~~rGiTid~~~~~~~~~~--~~v~~iDtPGhe~f~~~~~~g~~~aD~aI   78 (581)
T TIGR00475         1 MIIATAGHVDHGKTTLLKALTGIAADRLPEEKKRGMTIDLGFAYFPLPD--YRLGFIDVPGHEKFISNAIAGGGGIDAAL   78 (581)
T ss_pred             CEEEEECCCCCCHHHHHHHHhCccCcCChhHhcCCceEEeEEEEEEeCC--EEEEEEECCCHHHHHHHHHhhhccCCEEE
Confidence            479999999999999999998632   3222222222 22222344444  67889999999999888888889999999


Q ss_pred             EEEeCCCchhHHHHHHHHHHHHhhhCCCCC-EEEEeeCCcccCCcccccCCCCCCcccHHHHHHHHHHhC---CCceEEe
Q 036449           83 LAFSLISKASYENVSKKWIPELKHYAPGVP-IILVGTKLDLRDDKQFFIDHPGAVPISTAQGEELRKLIG---APAYIEC  158 (197)
Q Consensus        83 ~v~d~~~~~s~~~~~~~~~~~i~~~~~~~~-~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~  158 (197)
                      +|+|++++...+..  ..+..+...  ++| +++|+||+|+.+...        .....++...+...++   ..+++++
T Consensus        79 LVVDa~~G~~~qT~--ehl~il~~l--gi~~iIVVlNK~Dlv~~~~--------~~~~~~ei~~~l~~~~~~~~~~ii~v  146 (581)
T TIGR00475        79 LVVDADEGVMTQTG--EHLAVLDLL--GIPHTIVVITKADRVNEEE--------IKRTEMFMKQILNSYIFLKNAKIFKT  146 (581)
T ss_pred             EEEECCCCCcHHHH--HHHHHHHHc--CCCeEEEEEECCCCCCHHH--------HHHHHHHHHHHHHHhCCCCCCcEEEE
Confidence            99999984322221  222233333  677 999999999965331        0012344555555553   2389999


Q ss_pred             ccCCCCCHHHHHHHHHHHHcCCC
Q 036449          159 SSKTQQNVKAVFDAAIRVVLQPP  181 (197)
Q Consensus       159 sa~~~~~i~~l~~~i~~~~~~~~  181 (197)
                      ||++|.|+++++..+.+.+....
T Consensus       147 SA~tG~GI~eL~~~L~~l~~~~~  169 (581)
T TIGR00475       147 SAKTGQGIGELKKELKNLLESLD  169 (581)
T ss_pred             eCCCCCCchhHHHHHHHHHHhCC
Confidence            99999999999999988776543

In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This model describes the elongation factor SelB, a close homolog rf EF-Tu. It may function by replacing EF-Tu. A C-terminal domain not found in EF-Tu is in all SelB sequences in the seed alignment except that from Methanococcus jannaschii. This model does not find an equivalent protein for eukaryotes.

>TIGR00491 aIF-2 translation initiation factor aIF-2/yIF-2

Probab=99.87  E-value=5.2e-21  Score=153.36  Aligned_cols=170  Identities=18%  Similarity=0.137  Sum_probs=105.8

Q ss_pred             ceeEEEEEcCCCCCHHHHHHHHhhCCCCCCCCCce----eeeeeEEEEEC-------------CeEEEEEEEeCCCcccc
Q 036449            5 RFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTV----FDNFSANVVVN-------------GSTVNLGLWDTAGQEDY   67 (197)
Q Consensus         5 ~~~~i~v~G~~~~GKstli~~~~~~~~~~~~~~~~----~~~~~~~~~~~-------------~~~~~~~i~D~~G~~~~   67 (197)
                      +..-|+++|++++|||||++++.+..+.....+..    +..+.......             .....+.+|||||++.|
T Consensus         3 r~piV~IiG~~d~GKTSLln~l~~~~v~~~e~ggiTq~iG~~~v~~~~~~~~~~~~~~~~~v~~~~~~l~~iDTpG~e~f   82 (590)
T TIGR00491         3 RSPIVSVLGHVDHGKTTLLDKIRGSAVAKREAGGITQHIGATEIPMDVIEGICGDLLKKFKIRLKIPGLLFIDTPGHEAF   82 (590)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhccccccccCCceecccCeeEeeeccccccccccccccccccccCcEEEEECCCcHhH
Confidence            45679999999999999999999887754433322    21111110000             01123789999999999


Q ss_pred             ccccccCcCCCcEEEEEEeCCCchhHHHHHHHHHHHHhhhCCCCCEEEEeeCCcccCCcccccCCCC-------CCccc-
Q 036449           68 NRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLRDDKQFFIDHPG-------AVPIS-  139 (197)
Q Consensus        68 ~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~-------~~~~~-  139 (197)
                      ..++..++..+|++++|+|+++....+..  ..+..+...  +.|+++++||+|+.+........+.       ...+. 
T Consensus        83 ~~l~~~~~~~aD~~IlVvD~~~g~~~qt~--e~i~~l~~~--~vpiIVv~NK~Dl~~~~~~~~~~~f~e~sak~~~~v~~  158 (590)
T TIGR00491        83 TNLRKRGGALADLAILIVDINEGFKPQTQ--EALNILRMY--KTPFVVAANKIDRIPGWRSHEGRPFMESFSKQEIQVQQ  158 (590)
T ss_pred             HHHHHHHHhhCCEEEEEEECCcCCCHhHH--HHHHHHHHc--CCCEEEEEECCCccchhhhccCchHHHHHHhhhHHHHH
Confidence            99988899999999999999984332222  112233333  7899999999999642110000000       00000 


Q ss_pred             ------HHHHHHHH-------------HHhCCCceEEeccCCCCCHHHHHHHHHHHHc
Q 036449          140 ------TAQGEELR-------------KLIGAPAYIECSSKTQQNVKAVFDAAIRVVL  178 (197)
Q Consensus       140 ------~~~~~~~~-------------~~~~~~~~~~~sa~~~~~i~~l~~~i~~~~~  178 (197)
                            .....+++             ...+..+++++||++|+|+++++.+|.....
T Consensus       159 ~~~~~~~~lv~~l~~~G~~~e~~~~i~~~~~~v~iVpVSA~tGeGideLl~~l~~l~~  216 (590)
T TIGR00491       159 NLDTKVYNLVIKLHEEGFEAERFDRVTDFTKTVAIIPISAITGEGIPELLTMLAGLAQ  216 (590)
T ss_pred             HHHHHHHHHHHHHHhcCccHHhhhhhhhcCCCceEEEeecCCCCChhHHHHHHHHHHH
Confidence                  00001111             1123348999999999999999999876543

This model describes archaeal and eukaryotic orthologs of bacterial IF-2. Like IF-2, it helps convey the initiator tRNA to the ribosome, although the initiator is N-formyl-Met in bacteria and Met here. This protein is not closely related to the subunits of eIF-2 of eukaryotes, which is also involved in the initiation of translation. The aIF-2 of Methanococcus jannaschii contains a large intein interrupting a region of very strongly conserved sequence very near the amino end; this model does not correctly align the sequences from Methanococcus jannaschii and Pyrococcus horikoshii in this region.

>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed

Probab=99.87  E-value=3.7e-21  Score=158.73  Aligned_cols=158  Identities=23%  Similarity=0.242  Sum_probs=112.7

Q ss_pred             CceeEEEEEcCCCCCHHHHHHHHhhCCC--CCCCCCceeeeeeEEEEECCeEEEEEEEeCCCccc----------ccccc
Q 036449            4 SRFIKCVTVGDGAVGKTCLLISYTSNTF--PTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQED----------YNRLR   71 (197)
Q Consensus         4 ~~~~~i~v~G~~~~GKstli~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~----------~~~~~   71 (197)
                      +..++|+++|.+|||||||++++++...  ...+.+|+.+.......+++..  +.+|||||..+          |..+.
T Consensus       448 ~~~~kI~ivG~~nvGKSSLin~l~~~~~~~v~~~~gtT~d~~~~~~~~~~~~--~~liDTaG~~~~~~~~~~~e~~~~~r  525 (712)
T PRK09518        448 SGLRRVALVGRPNVGKSSLLNQLTHEERAVVNDLAGTTRDPVDEIVEIDGED--WLFIDTAGIKRRQHKLTGAEYYSSLR  525 (712)
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHhCccccccCCCCCCCcCcceeEEEECCCE--EEEEECCCcccCcccchhHHHHHHHH
Confidence            3458999999999999999999998763  4556667766666666677754  55999999632          11111


Q ss_pred             -ccCcCCCcEEEEEEeCCCchhHHHHHHHHHHHHhhhCCCCCEEEEeeCCcccCCcccccCCCCCCcccHHHHH-HHHHH
Q 036449           72 -PLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPISTAQGE-ELRKL  149 (197)
Q Consensus        72 -~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~-~~~~~  149 (197)
                       ...+..+|++++|+|++++.+.++.  .+...+...  +.|+++|+||+|+.+...            .+... .+...
T Consensus       526 ~~~~i~~advvilViDat~~~s~~~~--~i~~~~~~~--~~piIiV~NK~DL~~~~~------------~~~~~~~~~~~  589 (712)
T PRK09518        526 TQAAIERSELALFLFDASQPISEQDL--KVMSMAVDA--GRALVLVFNKWDLMDEFR------------RQRLERLWKTE  589 (712)
T ss_pred             HHHHhhcCCEEEEEEECCCCCCHHHH--HHHHHHHHc--CCCEEEEEEchhcCChhH------------HHHHHHHHHHh
Confidence             2346789999999999999888776  344444433  789999999999964321            11111 12221


Q ss_pred             ---hCCCceEEeccCCCCCHHHHHHHHHHHHcC
Q 036449          150 ---IGAPAYIECSSKTQQNVKAVFDAAIRVVLQ  179 (197)
Q Consensus       150 ---~~~~~~~~~sa~~~~~i~~l~~~i~~~~~~  179 (197)
                         ....+.+++||++|.|++++++.+.+.+..
T Consensus       590 l~~~~~~~ii~iSAktg~gv~~L~~~i~~~~~~  622 (712)
T PRK09518        590 FDRVTWARRVNLSAKTGWHTNRLAPAMQEALES  622 (712)
T ss_pred             ccCCCCCCEEEEECCCCCCHHHHHHHHHHHHHH
Confidence               223367999999999999999999988765

>PRK00093 GTP-binding protein Der; Reviewed

Probab=99.86  E-value=7.1e-21  Score=149.83  Aligned_cols=160  Identities=21%  Similarity=0.214  Sum_probs=108.4

Q ss_pred             ceeEEEEEcCCCCCHHHHHHHHhhCC--CCCCCCCceeeeeeEEEEECCeEEEEEEEeCCCccccccc----------c-
Q 036449            5 RFIKCVTVGDGAVGKTCLLISYTSNT--FPTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQEDYNRL----------R-   71 (197)
Q Consensus         5 ~~~~i~v~G~~~~GKstli~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~----------~-   71 (197)
                      ..++|+++|.+|+|||||++++++..  ......+++.+........++  ..+.+|||||.......          . 
T Consensus       172 ~~~~v~ivG~~n~GKStlin~ll~~~~~~~~~~~gtt~~~~~~~~~~~~--~~~~lvDT~G~~~~~~~~~~~e~~~~~~~  249 (435)
T PRK00093        172 EPIKIAIIGRPNVGKSSLINALLGEERVIVSDIAGTTRDSIDTPFERDG--QKYTLIDTAGIRRKGKVTEGVEKYSVIRT  249 (435)
T ss_pred             cceEEEEECCCCCCHHHHHHHHhCCCceeecCCCCceEEEEEEEEEECC--eeEEEEECCCCCCCcchhhHHHHHHHHHH
Confidence            46999999999999999999999754  234445555544444454555  44669999996432211          1 


Q ss_pred             ccCcCCCcEEEEEEeCCCchhHHHHHHHHHHHHhhhCCCCCEEEEeeCCcccCCcccccCCCCCCcccHHHHHHHHHHhC
Q 036449           72 PLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPISTAQGEELRKLIG  151 (197)
Q Consensus        72 ~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  151 (197)
                      ...+..+|++|+|+|++++.+.++.  .+...+...  +.|+++|+||+|+.+...       .. ...++........+
T Consensus       250 ~~~~~~ad~~ilViD~~~~~~~~~~--~i~~~~~~~--~~~~ivv~NK~Dl~~~~~-------~~-~~~~~~~~~l~~~~  317 (435)
T PRK00093        250 LKAIERADVVLLVIDATEGITEQDL--RIAGLALEA--GRALVIVVNKWDLVDEKT-------ME-EFKKELRRRLPFLD  317 (435)
T ss_pred             HHHHHHCCEEEEEEeCCCCCCHHHH--HHHHHHHHc--CCcEEEEEECccCCCHHH-------HH-HHHHHHHHhccccc
Confidence            1256789999999999998777665  344444444  689999999999963221       00 01111111111223


Q ss_pred             CCceEEeccCCCCCHHHHHHHHHHHHc
Q 036449          152 APAYIECSSKTQQNVKAVFDAAIRVVL  178 (197)
Q Consensus       152 ~~~~~~~sa~~~~~i~~l~~~i~~~~~  178 (197)
                      ..+++++||+++.|++++++.+.+...
T Consensus       318 ~~~i~~~SA~~~~gv~~l~~~i~~~~~  344 (435)
T PRK00093        318 YAPIVFISALTGQGVDKLLEAIDEAYE  344 (435)
T ss_pred             CCCEEEEeCCCCCCHHHHHHHHHHHHH
Confidence            348999999999999999999887654

>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed

Probab=99.86  E-value=1.5e-20  Score=155.14  Aligned_cols=154  Identities=19%  Similarity=0.192  Sum_probs=107.4

Q ss_pred             ceeEEEEEcCCCCCHHHHHHHHhhCCC--CCCCCCceeeeeeEEEEECCeEEEEEEEeCCCccc--------cccccccC
Q 036449            5 RFIKCVTVGDGAVGKTCLLISYTSNTF--PTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQED--------YNRLRPLS   74 (197)
Q Consensus         5 ~~~~i~v~G~~~~GKstli~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~--------~~~~~~~~   74 (197)
                      ...+|+++|.++||||||++++.+...  ....+.++.+.......+++  ..+.+|||||.+.        +......+
T Consensus       274 ~~~~V~IvG~~nvGKSSL~n~l~~~~~~iv~~~pGvT~d~~~~~~~~~~--~~~~liDT~G~~~~~~~~~~~~~~~~~~~  351 (712)
T PRK09518        274 AVGVVAIVGRPNVGKSTLVNRILGRREAVVEDTPGVTRDRVSYDAEWAG--TDFKLVDTGGWEADVEGIDSAIASQAQIA  351 (712)
T ss_pred             cCcEEEEECCCCCCHHHHHHHHhCCCceeecCCCCeeEEEEEEEEEECC--EEEEEEeCCCcCCCCccHHHHHHHHHHHH
Confidence            347899999999999999999997653  33344444444443444555  4577999999763        22333446


Q ss_pred             cCCCcEEEEEEeCCCchhHHHHHHHHHHHHhhhCCCCCEEEEeeCCcccCCcccccCCCCCCcccHHHHHHHHHHhCCCc
Q 036449           75 YRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPISTAQGEELRKLIGAPA  154 (197)
Q Consensus        75 ~~~~~~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  154 (197)
                      +..+|++|+|+|.++.....+  ..|...++..  +.|+++|+||+|+....             ... ..+. ..+...
T Consensus       352 ~~~aD~iL~VvDa~~~~~~~d--~~i~~~Lr~~--~~pvIlV~NK~D~~~~~-------------~~~-~~~~-~lg~~~  412 (712)
T PRK09518        352 VSLADAVVFVVDGQVGLTSTD--ERIVRMLRRA--GKPVVLAVNKIDDQASE-------------YDA-AEFW-KLGLGE  412 (712)
T ss_pred             HHhCCEEEEEEECCCCCCHHH--HHHHHHHHhc--CCCEEEEEECcccccch-------------hhH-HHHH-HcCCCC
Confidence            789999999999987543332  3556666554  89999999999985421             111 2221 233335


Q ss_pred             eEEeccCCCCCHHHHHHHHHHHHcC
Q 036449          155 YIECSSKTQQNVKAVFDAAIRVVLQ  179 (197)
Q Consensus       155 ~~~~sa~~~~~i~~l~~~i~~~~~~  179 (197)
                      .+++||++|.|+++++++|.+.+..
T Consensus       413 ~~~iSA~~g~GI~eLl~~i~~~l~~  437 (712)
T PRK09518        413 PYPISAMHGRGVGDLLDEALDSLKV  437 (712)
T ss_pred             eEEEECCCCCCchHHHHHHHHhccc
Confidence            6799999999999999999998855

>PRK12317 elongation factor 1-alpha; Reviewed

Probab=99.86  E-value=4.3e-21  Score=150.35  Aligned_cols=161  Identities=14%  Similarity=0.086  Sum_probs=102.4

Q ss_pred             CCCCceeEEEEEcCCCCCHHHHHHHHhhCCC--CCC------------------------------CCCceeeeeeEEEE
Q 036449            1 MSASRFIKCVTVGDGAVGKTCLLISYTSNTF--PTD------------------------------YVPTVFDNFSANVV   48 (197)
Q Consensus         1 m~~~~~~~i~v~G~~~~GKstli~~~~~~~~--~~~------------------------------~~~~~~~~~~~~~~   48 (197)
                      |++.+.++|+++|++++|||||+++|+....  ...                              ...++.+..  ...
T Consensus         1 ~~~k~~~~v~iiGh~d~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~Er~rG~T~d~~--~~~   78 (425)
T PRK12317          1 AKEKPHLNLAVIGHVDHGKSTLVGRLLYETGAIDEHIIEELREEAKEKGKESFKFAWVMDRLKEERERGVTIDLA--HKK   78 (425)
T ss_pred             CCCCCEEEEEEECCCCCChHHHHHHHHHHcCCcCHHHHHHHHHHHHhcCCcccchhhhhccCHhHhhcCccceee--eEE
Confidence            7889999999999999999999999984321  100                              111111111  122


Q ss_pred             ECCeEEEEEEEeCCCccccccccccCcCCCcEEEEEEeCCCchhHHHHHHHHHHHHhhhCCCCCEEEEeeCCcccCCccc
Q 036449           49 VNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLRDDKQF  128 (197)
Q Consensus        49 ~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~~~ivv~nK~D~~~~~~~  128 (197)
                      +....+.+.+|||||++.|.......+..+|++++|+|++++.........++...... ...|+++++||+|+..... 
T Consensus        79 ~~~~~~~i~liDtpG~~~~~~~~~~~~~~aD~~ilVvDa~~~~~~~~~~~~~~~~~~~~-~~~~iivviNK~Dl~~~~~-  156 (425)
T PRK12317         79 FETDKYYFTIVDCPGHRDFVKNMITGASQADAAVLVVAADDAGGVMPQTREHVFLARTL-GINQLIVAINKMDAVNYDE-  156 (425)
T ss_pred             EecCCeEEEEEECCCcccchhhHhhchhcCCEEEEEEEcccCCCCCcchHHHHHHHHHc-CCCeEEEEEEccccccccH-
Confidence            33344778999999998887655556788999999999987312211112222233222 2246999999999965211 


Q ss_pred             ccCCCCCCcccHHHHHHHHHHhCC----CceEEeccCCCCCHHHHH
Q 036449          129 FIDHPGAVPISTAQGEELRKLIGA----PAYIECSSKTQQNVKAVF  170 (197)
Q Consensus       129 ~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~sa~~~~~i~~l~  170 (197)
                           .......++...+....+.    .+++++||++|.|+++++
T Consensus       157 -----~~~~~~~~~i~~~l~~~g~~~~~~~ii~iSA~~g~gi~~~~  197 (425)
T PRK12317        157 -----KRYEEVKEEVSKLLKMVGYKPDDIPFIPVSAFEGDNVVKKS  197 (425)
T ss_pred             -----HHHHHHHHHHHHHHHhhCCCcCcceEEEeecccCCCccccc
Confidence                 0001123445556555553    369999999999998744

>COG2229 Predicted GTPase [General function prediction only]

Probab=99.86  E-value=4.4e-20  Score=123.95  Aligned_cols=156  Identities=20%  Similarity=0.227  Sum_probs=118.4

Q ss_pred             CCceeEEEEEcCCCCCHHHHHHHHhhCCCCC--------CCCC---ce-eeeeeEEEEECCeEEEEEEEeCCCccccccc
Q 036449            3 ASRFIKCVTVGDGAVGKTCLLISYTSNTFPT--------DYVP---TV-FDNFSANVVVNGSTVNLGLWDTAGQEDYNRL   70 (197)
Q Consensus         3 ~~~~~~i~v~G~~~~GKstli~~~~~~~~~~--------~~~~---~~-~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~   70 (197)
                      .....+|+|+|+.++||||+++++.......        .+..   |+ .-.+......+  ...+.+++||||++|..+
T Consensus         7 k~~~~KIvv~G~~~agKtTfv~~~s~k~~v~t~~~~~~~s~k~kr~tTva~D~g~~~~~~--~~~v~LfgtPGq~RF~fm   84 (187)
T COG2229           7 KMIETKIVVIGPVGAGKTTFVRALSDKPLVITEADASSVSGKGKRPTTVAMDFGSIELDE--DTGVHLFGTPGQERFKFM   84 (187)
T ss_pred             cccceeEEEEcccccchhhHHHHhhccccceeeccccccccccccceeEeecccceEEcC--cceEEEecCCCcHHHHHH
Confidence            3466899999999999999999998776421        1111   11 22222222222  245779999999999999


Q ss_pred             cccCcCCCcEEEEEEeCCCchhHHHHHHHHHHHHhhhCCCCCEEEEeeCCcccCCcccccCCCCCCcccHHHHHHHHHHh
Q 036449           71 RPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPISTAQGEELRKLI  150 (197)
Q Consensus        71 ~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  150 (197)
                      |..+++++.++|+++|-+++..+ .. ...+..+....+ +|++|++||.|+....            ..+..+++...-
T Consensus        85 ~~~l~~ga~gaivlVDss~~~~~-~a-~~ii~f~~~~~~-ip~vVa~NK~DL~~a~------------ppe~i~e~l~~~  149 (187)
T COG2229          85 WEILSRGAVGAIVLVDSSRPITF-HA-EEIIDFLTSRNP-IPVVVAINKQDLFDAL------------PPEKIREALKLE  149 (187)
T ss_pred             HHHHhCCcceEEEEEecCCCcch-HH-HHHHHHHhhccC-CCEEEEeeccccCCCC------------CHHHHHHHHHhc
Confidence            99999999999999999999988 44 577777777754 9999999999997753            345555544433


Q ss_pred             --CCCceEEeccCCCCCHHHHHHHHHHH
Q 036449          151 --GAPAYIECSSKTQQNVKAVFDAAIRV  176 (197)
Q Consensus       151 --~~~~~~~~sa~~~~~i~~l~~~i~~~  176 (197)
                        .. +.++.+|.++++..+.++.+...
T Consensus       150 ~~~~-~vi~~~a~e~~~~~~~L~~ll~~  176 (187)
T COG2229         150 LLSV-PVIEIDATEGEGARDQLDVLLLK  176 (187)
T ss_pred             cCCC-ceeeeecccchhHHHHHHHHHhh
Confidence              44 89999999999999999998876

>PRK12298 obgE GTPase CgtA; Reviewed

Probab=99.86  E-value=2.2e-20  Score=143.62  Aligned_cols=160  Identities=18%  Similarity=0.164  Sum_probs=111.1

Q ss_pred             EEEEEcCCCCCHHHHHHHHhhCCC-CCCCCCceeeeeeEEEEECCeEEEEEEEeCCCccccc-------cccccCcCCCc
Q 036449            8 KCVTVGDGAVGKTCLLISYTSNTF-PTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQEDYN-------RLRPLSYRGAD   79 (197)
Q Consensus         8 ~i~v~G~~~~GKstli~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~-------~~~~~~~~~~~   79 (197)
                      .|+++|.++||||||++++...+. ...++.|+.......+...+ ...+.++|+||...-.       ......+..++
T Consensus       161 dValVG~PNaGKSTLln~Lt~~k~~vs~~p~TT~~p~~Giv~~~~-~~~i~~vDtPGi~~~a~~~~~Lg~~~l~~i~rad  239 (390)
T PRK12298        161 DVGLLGLPNAGKSTFIRAVSAAKPKVADYPFTTLVPNLGVVRVDD-ERSFVVADIPGLIEGASEGAGLGIRFLKHLERCR  239 (390)
T ss_pred             cEEEEcCCCCCHHHHHHHHhCCcccccCCCCCccCcEEEEEEeCC-CcEEEEEeCCCccccccchhhHHHHHHHHHHhCC
Confidence            699999999999999999987543 34455555444433444432 2347799999964311       11112467899


Q ss_pred             EEEEEEeCC---CchhHHHHHHHHHHHHhhhC---CCCCEEEEeeCCcccCCcccccCCCCCCcccHHHHHHHHHHhCC-
Q 036449           80 VFILAFSLI---SKASYENVSKKWIPELKHYA---PGVPIILVGTKLDLRDDKQFFIDHPGAVPISTAQGEELRKLIGA-  152 (197)
Q Consensus        80 ~~i~v~d~~---~~~s~~~~~~~~~~~i~~~~---~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-  152 (197)
                      ++++|+|++   +.+.++.. ..|...+....   .+.|+++|+||+|+.....           ..+....+.+..+. 
T Consensus       240 vlL~VVD~s~~~~~d~~e~~-~~l~~eL~~~~~~L~~kP~IlVlNKiDl~~~~e-----------l~~~l~~l~~~~~~~  307 (390)
T PRK12298        240 VLLHLIDIAPIDGSDPVENA-RIIINELEKYSPKLAEKPRWLVFNKIDLLDEEE-----------AEERAKAIVEALGWE  307 (390)
T ss_pred             EEEEEeccCcccccChHHHH-HHHHHHHHhhhhhhcCCCEEEEEeCCccCChHH-----------HHHHHHHHHHHhCCC
Confidence            999999998   44556655 56777776653   3689999999999964321           12334445555443 


Q ss_pred             CceEEeccCCCCCHHHHHHHHHHHHcCC
Q 036449          153 PAYIECSSKTQQNVKAVFDAAIRVVLQP  180 (197)
Q Consensus       153 ~~~~~~sa~~~~~i~~l~~~i~~~~~~~  180 (197)
                      .+++.+||+++.|++++++.|.+.+...
T Consensus       308 ~~Vi~ISA~tg~GIdeLl~~I~~~L~~~  335 (390)
T PRK12298        308 GPVYLISAASGLGVKELCWDLMTFIEEN  335 (390)
T ss_pred             CCEEEEECCCCcCHHHHHHHHHHHhhhC
Confidence            2689999999999999999999988664

>cd01896 DRG The developmentally regulated GTP-binding protein (DRG) subfamily is an uncharacterized member of the Obg family, an evolutionary branch of GTPase superfamily proteins

Probab=99.86  E-value=4.7e-20  Score=133.29  Aligned_cols=150  Identities=19%  Similarity=0.213  Sum_probs=101.5

Q ss_pred             EEEEEcCCCCCHHHHHHHHhhCCC-CCCCCCceeeeeeEEEEECCeEEEEEEEeCCCccccc-------cccccCcCCCc
Q 036449            8 KCVTVGDGAVGKTCLLISYTSNTF-PTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQEDYN-------RLRPLSYRGAD   79 (197)
Q Consensus         8 ~i~v~G~~~~GKstli~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~-------~~~~~~~~~~~   79 (197)
                      +|+++|.+|+|||||++++.+... ...++.++.......+.+++  ..+++||+||.....       ......++++|
T Consensus         2 ~v~lvG~~~~GKStLl~~Ltg~~~~v~~~~~tT~~~~~g~~~~~~--~~i~l~DtpG~~~~~~~~~~~~~~~l~~~~~ad   79 (233)
T cd01896           2 RVALVGFPSVGKSTLLSKLTNTKSEVAAYEFTTLTCVPGVLEYKG--AKIQLLDLPGIIEGAADGKGRGRQVIAVARTAD   79 (233)
T ss_pred             EEEEECCCCCCHHHHHHHHHCCCccccCCCCccccceEEEEEECC--eEEEEEECCCcccccccchhHHHHHHHhhccCC
Confidence            789999999999999999997653 33444444333344455555  568899999975432       12234688999


Q ss_pred             EEEEEEeCCCchh-HHHHHHHHHH--------------------------------------------H-----------
Q 036449           80 VFILAFSLISKAS-YENVSKKWIP--------------------------------------------E-----------  103 (197)
Q Consensus        80 ~~i~v~d~~~~~s-~~~~~~~~~~--------------------------------------------~-----------  103 (197)
                      ++++|+|+++++. .+.+ ...+.                                            .           
T Consensus        80 ~il~V~D~t~~~~~~~~~-~~~l~~~gi~l~~~~~~v~~~~~~~ggi~~~~~~~~~~~~~~~v~~~l~~~~i~~~~v~~~  158 (233)
T cd01896          80 LILMVLDATKPEGHREIL-ERELEGVGIRLNKRPPNITIKKKKKGGINITSTVPLTKLDEKTIKAILREYKIHNADVLIR  158 (233)
T ss_pred             EEEEEecCCcchhHHHHH-HHHHHHcCceecCCCCeEEEEEEecCCEEEeccCCCCCCCHHHHHHHHHHhCeeeEEEEEc
Confidence            9999999987653 2222 11111                                            1           


Q ss_pred             -----------HhhhCCCCCEEEEeeCCcccCCcccccCCCCCCcccHHHHHHHHHHhCCCceEEeccCCCCCHHHHHHH
Q 036449          104 -----------LKHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQQNVKAVFDA  172 (197)
Q Consensus       104 -----------i~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~l~~~  172 (197)
                                 +.....-.|+++|+||+|+..               .+++..+++.   .+++++||+++.|++++|+.
T Consensus       159 ~~~~~~~~~~~~~~~~~y~p~iiV~NK~Dl~~---------------~~~~~~~~~~---~~~~~~SA~~g~gi~~l~~~  220 (233)
T cd01896         159 EDITVDDLIDVIEGNRVYIPCLYVYNKIDLIS---------------IEELDLLARQ---PNSVVISAEKGLNLDELKER  220 (233)
T ss_pred             cCCCHHHHHHHHhCCceEeeEEEEEECccCCC---------------HHHHHHHhcC---CCEEEEcCCCCCCHHHHHHH
Confidence                       111112358999999999843               3344444432   26899999999999999999


Q ss_pred             HHHHHc
Q 036449          173 AIRVVL  178 (197)
Q Consensus       173 i~~~~~  178 (197)
                      +.+.+.
T Consensus       221 i~~~L~  226 (233)
T cd01896         221 IWDKLG  226 (233)
T ss_pred             HHHHhC
Confidence            998653

GTPases act as molecular switches regulating diverse cellular processes. DRG2 and DRG1 comprise the DRG subfamily in eukaryotes. In view of their widespread expression in various tissues and high conservation among distantly related species in eukaryotes and archaea, DRG proteins may regulate fundamental cellular processes. It is proposed that the DRG subfamily proteins play their physiological roles through RNA binding.

>cd00880 Era_like Era (E

Probab=99.86  E-value=1.6e-20  Score=127.97  Aligned_cols=151  Identities=21%  Similarity=0.199  Sum_probs=102.4

Q ss_pred             EEcCCCCCHHHHHHHHhhCCCC--CCCCCceeeeeeEEEEECCeEEEEEEEeCCCccccccccc-------cCcCCCcEE
Q 036449           11 TVGDGAVGKTCLLISYTSNTFP--TDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQEDYNRLRP-------LSYRGADVF   81 (197)
Q Consensus        11 v~G~~~~GKstli~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~-------~~~~~~~~~   81 (197)
                      ++|++|+|||||++++.+....  ....+++............ ...+.+||+||...+.....       .++..+|++
T Consensus         1 i~G~~gsGKstl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~~~~~d~i   79 (163)
T cd00880           1 LFGRTNAGKSSLLNALLGQEVAIVSPVPGTTTDPVEYVWELGP-LGPVVLIDTPGIDEAGGLGREREELARRVLERADLI   79 (163)
T ss_pred             CcCCCCCCHHHHHHHHhCccccccCCCCCcEECCeEEEEEecC-CCcEEEEECCCCCccccchhhHHHHHHHHHHhCCEE
Confidence            5899999999999999876543  2223333333333333321 35688999999876654333       367889999


Q ss_pred             EEEEeCCCchhHHHHHHHHHHHHhhhCCCCCEEEEeeCCcccCCcccccCCCCCCcccHHH--HHHHHHHhCCCceEEec
Q 036449           82 ILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPISTAQ--GEELRKLIGAPAYIECS  159 (197)
Q Consensus        82 i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~s  159 (197)
                      ++|+|.++..+.... . +......  .+.|+++|+||+|+.....          .....  ...........+++++|
T Consensus        80 l~v~~~~~~~~~~~~-~-~~~~~~~--~~~~~ivv~nK~D~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~s  145 (163)
T cd00880          80 LFVVDADLRADEEEE-K-LLELLRE--RGKPVLLVLNKIDLLPEEE----------EEELLELRLLILLLLLGLPVIAVS  145 (163)
T ss_pred             EEEEeCCCCCCHHHH-H-HHHHHHh--cCCeEEEEEEccccCChhh----------HHHHHHHHHhhcccccCCceEEEe
Confidence            999999998877766 2 3333333  3799999999999976432          11110  11222233334899999


Q ss_pred             cCCCCCHHHHHHHHHHH
Q 036449          160 SKTQQNVKAVFDAAIRV  176 (197)
Q Consensus       160 a~~~~~i~~l~~~i~~~  176 (197)
                      |+++.|+.++++++.+.
T Consensus       146 a~~~~~v~~l~~~l~~~  162 (163)
T cd00880         146 ALTGEGIDELREALIEA  162 (163)
T ss_pred             eeccCCHHHHHHHHHhh
Confidence            99999999999999875

coli Ras-like protein)-like. This family includes several distinct subfamilies (TrmE/ThdF, FeoB, YihA (EngG), Era, and EngA/YfgK) that generally show sequence conservation in the region between the Walker A and B motifs (G1 and G3 box motifs), to the exclusion of other GTPases. TrmE is ubiquitous in bacteria and is a widespread mitochondrial protein in eukaryotes, but is absent from archaea. The yeast member of TrmE family, MSS1, is involved in mitochondrial translation; bacterial members are often present in translation-related operons. FeoB represents an unusual adaptation of GTPases for high-affinity iron (II) transport. YihA (EngB) family of GTPases is typified by the E. coli YihA, which is an essential protein involved in cell division control. Era is characterized by a distinct derivative of the KH domain (the pseudo-KH domain) which is located C-terminal to the GTPase domain. EngA and its orthologs are composed of two GTPase domains and, since the se

>TIGR00437 feoB ferrous iron transporter FeoB

Probab=99.86  E-value=1.8e-20  Score=151.13  Aligned_cols=145  Identities=17%  Similarity=0.234  Sum_probs=105.2

Q ss_pred             cCCCCCHHHHHHHHhhCCC-CCCCCCceeeeeeEEEEECCeEEEEEEEeCCCccccccc------cccC--cCCCcEEEE
Q 036449           13 GDGAVGKTCLLISYTSNTF-PTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQEDYNRL------RPLS--YRGADVFIL   83 (197)
Q Consensus        13 G~~~~GKstli~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~------~~~~--~~~~~~~i~   83 (197)
                      |.+|+|||||++++.+... ..+++.++.+.....+.+++  ..+++||+||+.++...      ...+  ...+|++++
T Consensus         1 G~pNvGKSSL~N~Ltg~~~~v~n~pG~Tv~~~~~~i~~~~--~~i~lvDtPG~~~~~~~s~~e~v~~~~l~~~~aDvvI~   78 (591)
T TIGR00437         1 GNPNVGKSTLFNALTGANQTVGNWPGVTVEKKEGKLGFQG--EDIEIVDLPGIYSLTTFSLEEEVARDYLLNEKPDLVVN   78 (591)
T ss_pred             CCCCCCHHHHHHHHhCCCCeecCCCCeEEEEEEEEEEECC--eEEEEEECCCccccCccchHHHHHHHHHhhcCCCEEEE
Confidence            8999999999999998765 33444444444445555665  35679999999877543      2222  247899999


Q ss_pred             EEeCCCchhHHHHHHHHHHHHhhhCCCCCEEEEeeCCcccCCcccccCCCCCCcccHHHHHHHHHHhCCCceEEeccCCC
Q 036449           84 AFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQ  163 (197)
Q Consensus        84 v~d~~~~~s~~~~~~~~~~~i~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~  163 (197)
                      |+|.++.+...    .+...+...  +.|+++|+||+|+.+...          . ..+.+.+++..+. +++++||++|
T Consensus        79 VvDat~ler~l----~l~~ql~~~--~~PiIIVlNK~Dl~~~~~----------i-~~d~~~L~~~lg~-pvv~tSA~tg  140 (591)
T TIGR00437        79 VVDASNLERNL----YLTLQLLEL--GIPMILALNLVDEAEKKG----------I-RIDEEKLEERLGV-PVVPTSATEG  140 (591)
T ss_pred             EecCCcchhhH----HHHHHHHhc--CCCEEEEEehhHHHHhCC----------C-hhhHHHHHHHcCC-CEEEEECCCC
Confidence            99998754321    222333333  799999999999965432          2 2345678888887 8999999999


Q ss_pred             CCHHHHHHHHHHHH
Q 036449          164 QNVKAVFDAAIRVV  177 (197)
Q Consensus       164 ~~i~~l~~~i~~~~  177 (197)
                      .|++++++++.+.+
T Consensus       141 ~Gi~eL~~~i~~~~  154 (591)
T TIGR00437       141 RGIERLKDAIRKAI  154 (591)
T ss_pred             CCHHHHHHHHHHHh
Confidence            99999999998865

FeoB (773 amino acids in E. coli), a cytoplasmic membrane protein required for iron(II) update, is encoded in an operon with FeoA (75 amino acids), which is also required, and is regulated by Fur. There appear to be two copies in Archaeoglobus fulgidus and Clostridium acetobutylicum.

>KOG0072 consensus GTP-binding ADP-ribosylation factor-like protein ARL1 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.85  E-value=1.2e-21  Score=125.87  Aligned_cols=165  Identities=16%  Similarity=0.165  Sum_probs=123.5

Q ss_pred             CceeEEEEEcCCCCCHHHHHHHHhhCCCCCCCCCceeeeeeEEEEECCeEEEEEEEeCCCccccccccccCcCCCcEEEE
Q 036449            4 SRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFIL   83 (197)
Q Consensus         4 ~~~~~i~v~G~~~~GKstli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~   83 (197)
                      .+..+|+++|-.|+||||++-++..+..... .|+.+.... .  +..+++.+++||..|+-..+..|.-|+.+.+++|+
T Consensus        16 e~e~rililgldGaGkttIlyrlqvgevvtt-kPtigfnve-~--v~yKNLk~~vwdLggqtSirPyWRcYy~dt~avIy   91 (182)
T KOG0072|consen   16 EREMRILILGLDGAGKTTILYRLQVGEVVTT-KPTIGFNVE-T--VPYKNLKFQVWDLGGQTSIRPYWRCYYADTDAVIY   91 (182)
T ss_pred             ccceEEEEeeccCCCeeEEEEEcccCccccc-CCCCCcCcc-c--cccccccceeeEccCcccccHHHHHHhcccceEEE
Confidence            3789999999999999999988877665544 344432221 1  22356889999999999999999999999999999


Q ss_pred             EEeCCCchhHHHHHHHHHHHHhhhC-CCCCEEEEeeCCcccCCcccccCCCCCCcccHHHHHHHHHHhCCCceEEeccCC
Q 036449           84 AFSLISKASYENVSKKWIPELKHYA-PGVPIILVGTKLDLRDDKQFFIDHPGAVPISTAQGEELRKLIGAPAYIECSSKT  162 (197)
Q Consensus        84 v~d~~~~~s~~~~~~~~~~~i~~~~-~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~  162 (197)
                      |+|.+|..........++.++++.. .+..+++++||.|.....-       ..++.......-.++.-. .++++||.+
T Consensus        92 VVDssd~dris~a~~el~~mL~E~eLq~a~llv~anKqD~~~~~t-------~~E~~~~L~l~~Lk~r~~-~Iv~tSA~k  163 (182)
T KOG0072|consen   92 VVDSSDRDRISIAGVELYSMLQEEELQHAKLLVFANKQDYSGALT-------RSEVLKMLGLQKLKDRIW-QIVKTSAVK  163 (182)
T ss_pred             EEeccchhhhhhhHHHHHHHhccHhhcCceEEEEeccccchhhhh-------HHHHHHHhChHHHhhhee-EEEeecccc
Confidence            9999999888777667788887665 6788899999999865321       000111111122222223 799999999


Q ss_pred             CCCHHHHHHHHHHHHcCC
Q 036449          163 QQNVKAVFDAAIRVVLQP  180 (197)
Q Consensus       163 ~~~i~~l~~~i~~~~~~~  180 (197)
                      |+|+++.++|+.+.+.+.
T Consensus       164 g~Gld~~~DWL~~~l~~~  181 (182)
T KOG0072|consen  164 GEGLDPAMDWLQRPLKSR  181 (182)
T ss_pred             ccCCcHHHHHHHHHHhcc
Confidence            999999999999887654

>PRK09554 feoB ferrous iron transport protein B; Reviewed

Probab=99.84  E-value=2.2e-19  Score=148.13  Aligned_cols=153  Identities=17%  Similarity=0.178  Sum_probs=110.9

Q ss_pred             ceeEEEEEcCCCCCHHHHHHHHhhCCC-CCCCCCceeeeeeEEEEECCeEEEEEEEeCCCccccccccc----------c
Q 036449            5 RFIKCVTVGDGAVGKTCLLISYTSNTF-PTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQEDYNRLRP----------L   73 (197)
Q Consensus         5 ~~~~i~v~G~~~~GKstli~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~----------~   73 (197)
                      +.++|+++|++|+|||||+|++.+... ..++..++.+.....+..+  ...+.+||+||+..+.....          .
T Consensus         2 ~~~~IaLvG~pNvGKSTLfN~Ltg~~~~vgn~pGvTve~k~g~~~~~--~~~i~lvDtPG~ysl~~~~~~~s~~E~i~~~   79 (772)
T PRK09554          2 KKLTIGLIGNPNSGKTTLFNQLTGARQRVGNWAGVTVERKEGQFSTT--DHQVTLVDLPGTYSLTTISSQTSLDEQIACH   79 (772)
T ss_pred             CceEEEEECCCCCCHHHHHHHHhCCCCccCCCCCceEeeEEEEEEcC--ceEEEEEECCCccccccccccccHHHHHHHH
Confidence            357899999999999999999987543 2344444443333333333  46678999999877653211          1


Q ss_pred             C--cCCCcEEEEEEeCCCchhHHHHHHHHHHHHhhhCCCCCEEEEeeCCcccCCcccccCCCCCCcccHHHHHHHHHHhC
Q 036449           74 S--YRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPISTAQGEELRKLIG  151 (197)
Q Consensus        74 ~--~~~~~~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  151 (197)
                      +  ...+|++++|+|.++.+...    .+...+.+.  +.|+++++||+|+.+.+.          . ..+.+.+++..+
T Consensus        80 ~l~~~~aD~vI~VvDat~ler~l----~l~~ql~e~--giPvIvVlNK~Dl~~~~~----------i-~id~~~L~~~LG  142 (772)
T PRK09554         80 YILSGDADLLINVVDASNLERNL----YLTLQLLEL--GIPCIVALNMLDIAEKQN----------I-RIDIDALSARLG  142 (772)
T ss_pred             HHhccCCCEEEEEecCCcchhhH----HHHHHHHHc--CCCEEEEEEchhhhhccC----------c-HHHHHHHHHHhC
Confidence            2  24789999999999865432    233444444  799999999999865432          2 345567888889


Q ss_pred             CCceEEeccCCCCCHHHHHHHHHHHH
Q 036449          152 APAYIECSSKTQQNVKAVFDAAIRVV  177 (197)
Q Consensus       152 ~~~~~~~sa~~~~~i~~l~~~i~~~~  177 (197)
                      . +++++||.+++|++++.+.+.+..
T Consensus       143 ~-pVvpiSA~~g~GIdeL~~~I~~~~  167 (772)
T PRK09554        143 C-PVIPLVSTRGRGIEALKLAIDRHQ  167 (772)
T ss_pred             C-CEEEEEeecCCCHHHHHHHHHHhh
Confidence            8 899999999999999999998765

>TIGR00483 EF-1_alpha translation elongation factor EF-1 alpha

Probab=99.84  E-value=2.7e-20  Score=145.85  Aligned_cols=158  Identities=14%  Similarity=0.081  Sum_probs=101.4

Q ss_pred             CCceeEEEEEcCCCCCHHHHHHHHhh--CCCCCC------------------------------CCCceeeeeeEEEEEC
Q 036449            3 ASRFIKCVTVGDGAVGKTCLLISYTS--NTFPTD------------------------------YVPTVFDNFSANVVVN   50 (197)
Q Consensus         3 ~~~~~~i~v~G~~~~GKstli~~~~~--~~~~~~------------------------------~~~~~~~~~~~~~~~~   50 (197)
                      +.+.++|+++|+.++|||||+.+|+.  +.....                              ....+.+..  ...+.
T Consensus         4 ~~~~~~v~i~Ghvd~GKSTL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~rg~Tid~~--~~~~~   81 (426)
T TIGR00483         4 EKEHINVAFIGHVDHGKSTTVGHLLYKCGAIDEQTIEKFEKEAQEKGKASFEFAWVMDRLKEERERGVTIDVA--HWKFE   81 (426)
T ss_pred             CCceeEEEEEeccCCcHHHHHHHHHHHhCCcCHHHHHHHHhHHHhcCCcccchhhhhccCHHHhhcCceEEEE--EEEEc
Confidence            35679999999999999999999985  222110                              000111111  12233


Q ss_pred             CeEEEEEEEeCCCccccccccccCcCCCcEEEEEEeCCCchhHHHHH-HHHHHHHhhhCCCCCEEEEeeCCcccCCcccc
Q 036449           51 GSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVS-KKWIPELKHYAPGVPIILVGTKLDLRDDKQFF  129 (197)
Q Consensus        51 ~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~-~~~~~~i~~~~~~~~~ivv~nK~D~~~~~~~~  129 (197)
                      ...+.+.+||+||++.|.......+..+|++++|+|++++++..... ..+.. +.......++++++||+|+.+...  
T Consensus        82 ~~~~~i~iiDtpGh~~f~~~~~~~~~~aD~~ilVvDa~~~~~~~~~~t~~~~~-~~~~~~~~~iIVviNK~Dl~~~~~--  158 (426)
T TIGR00483        82 TDKYEVTIVDCPGHRDFIKNMITGASQADAAVLVVAVGDGEFEVQPQTREHAF-LARTLGINQLIVAINKMDSVNYDE--  158 (426)
T ss_pred             cCCeEEEEEECCCHHHHHHHHHhhhhhCCEEEEEEECCCCCcccCCchHHHHH-HHHHcCCCeEEEEEEChhccCccH--
Confidence            33477899999999988766666778999999999999885432110 11112 222223357999999999964221  


Q ss_pred             cCCCCCCcccHHHHHHHHHHhCC----CceEEeccCCCCCHHHH
Q 036449          130 IDHPGAVPISTAQGEELRKLIGA----PAYIECSSKTQQNVKAV  169 (197)
Q Consensus       130 ~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~sa~~~~~i~~l  169 (197)
                          ........+.+.+++..+.    .+++++||++|.|+.+.
T Consensus       159 ----~~~~~~~~ei~~~~~~~g~~~~~~~~i~iSA~~g~ni~~~  198 (426)
T TIGR00483       159 ----EEFEAIKKEVSNLIKKVGYNPDTVPFIPISAWNGDNVIKK  198 (426)
T ss_pred             ----HHHHHHHHHHHHHHHHcCCCcccceEEEeecccccccccc
Confidence                0011223456667776653    37999999999999863

This model represents the counterpart of bacterial EF-Tu for the Archaea (aEF-1 alpha) and Eukaryotes (eEF-1 alpha). The trusted cutoff is set fairly high so that incomplete sequences will score between suggested and trusted cutoff levels.

>PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways

Probab=99.84  E-value=2.7e-20  Score=122.28  Aligned_cols=136  Identities=21%  Similarity=0.226  Sum_probs=99.2

Q ss_pred             EEEEEcCCCCCHHHHHHHHhhCCCCCCCCCceeeeeeEEEEECCeEEEEEEEeCCCc----cccccccccCcCCCcEEEE
Q 036449            8 KCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQ----EDYNRLRPLSYRGADVFIL   83 (197)
Q Consensus         8 ~i~v~G~~~~GKstli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~----~~~~~~~~~~~~~~~~~i~   83 (197)
                      ||+++|+.|+|||||+++|.+......  .|..      +.     +.=.++||||.    ..|.........+||.+++
T Consensus         3 rimliG~~g~GKTTL~q~L~~~~~~~~--KTq~------i~-----~~~~~IDTPGEyiE~~~~y~aLi~ta~dad~V~l   69 (143)
T PF10662_consen    3 RIMLIGPSGSGKTTLAQALNGEEIRYK--KTQA------IE-----YYDNTIDTPGEYIENPRFYHALIVTAQDADVVLL   69 (143)
T ss_pred             eEEEECCCCCCHHHHHHHHcCCCCCcC--ccce------eE-----ecccEEECChhheeCHHHHHHHHHHHhhCCEEEE
Confidence            799999999999999999998765322  2221      11     11136999994    2333444445668999999


Q ss_pred             EEeCCCchhHHHHHHHHHHHHhhhCCCCCEEEEeeCCcccCCcccccCCCCCCcccHHHHHHHHHHhCCCceEEeccCCC
Q 036449           84 AFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQ  163 (197)
Q Consensus        84 v~d~~~~~s~~~~~~~~~~~i~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~  163 (197)
                      +.|.+++.+.-.      +.+...+ +.|+|-|+||+|+....           .+.+.++++.+.-|+..+|++|+.+|
T Consensus        70 l~dat~~~~~~p------P~fa~~f-~~pvIGVITK~Dl~~~~-----------~~i~~a~~~L~~aG~~~if~vS~~~~  131 (143)
T PF10662_consen   70 LQDATEPRSVFP------PGFASMF-NKPVIGVITKIDLPSDD-----------ANIERAKKWLKNAGVKEIFEVSAVTG  131 (143)
T ss_pred             EecCCCCCccCC------chhhccc-CCCEEEEEECccCccch-----------hhHHHHHHHHHHcCCCCeEEEECCCC
Confidence            999998754322      1122222 57999999999998432           35677888889999988999999999


Q ss_pred             CCHHHHHHHHH
Q 036449          164 QNVKAVFDAAI  174 (197)
Q Consensus       164 ~~i~~l~~~i~  174 (197)
                      +|+++|.+.|.
T Consensus       132 eGi~eL~~~L~  142 (143)
T PF10662_consen  132 EGIEELKDYLE  142 (143)
T ss_pred             cCHHHHHHHHh
Confidence            99999998874

Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process

>COG1160 Predicted GTPases [General function prediction only]

Probab=99.84  E-value=7.7e-20  Score=138.97  Aligned_cols=151  Identities=20%  Similarity=0.214  Sum_probs=117.0

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhhCCC--CCCCCCceeeeeeEEEEECCeEEEEEEEeCCCccccc---------cccccCc
Q 036449            7 IKCVTVGDGAVGKTCLLISYTSNTF--PTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQEDYN---------RLRPLSY   75 (197)
Q Consensus         7 ~~i~v~G~~~~GKstli~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~---------~~~~~~~   75 (197)
                      ..|+++|.|+||||||+|++.+...  ..+++.++.+.......+.+..  +.++||+|.+...         ......+
T Consensus         4 ~~VAIVGRPNVGKSTLFNRL~g~r~AIV~D~pGvTRDr~y~~~~~~~~~--f~lIDTgGl~~~~~~~l~~~i~~Qa~~Ai   81 (444)
T COG1160           4 PVVAIVGRPNVGKSTLFNRLTGRRIAIVSDTPGVTRDRIYGDAEWLGRE--FILIDTGGLDDGDEDELQELIREQALIAI   81 (444)
T ss_pred             CEEEEECCCCCcHHHHHHHHhCCeeeEeecCCCCccCCccceeEEcCce--EEEEECCCCCcCCchHHHHHHHHHHHHHH
Confidence            6799999999999999999998654  6788888888888888887754  7799999965322         2334457


Q ss_pred             CCCcEEEEEEeCCCchhHHHHHHHHHHHHhhhCCCCCEEEEeeCCcccCCcccccCCCCCCcccHHHHHHHHHHhCCCce
Q 036449           76 RGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPISTAQGEELRKLIGAPAY  155 (197)
Q Consensus        76 ~~~~~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  155 (197)
                      ..||++|||+|...+.+-.+-  .....++..  +.|+++|+||+|-...              .+.+.+| ..+|....
T Consensus        82 ~eADvilfvVD~~~Git~~D~--~ia~~Lr~~--~kpviLvvNK~D~~~~--------------e~~~~ef-yslG~g~~  142 (444)
T COG1160          82 EEADVILFVVDGREGITPADE--EIAKILRRS--KKPVILVVNKIDNLKA--------------EELAYEF-YSLGFGEP  142 (444)
T ss_pred             HhCCEEEEEEeCCCCCCHHHH--HHHHHHHhc--CCCEEEEEEcccCchh--------------hhhHHHH-HhcCCCCc
Confidence            789999999999887665543  445555533  6999999999998531              1222333 44666689


Q ss_pred             EEeccCCCCCHHHHHHHHHHHHc
Q 036449          156 IECSSKTQQNVKAVFDAAIRVVL  178 (197)
Q Consensus       156 ~~~sa~~~~~i~~l~~~i~~~~~  178 (197)
                      +.+||..|.|+.+|.+.+++.+.
T Consensus       143 ~~ISA~Hg~Gi~dLld~v~~~l~  165 (444)
T COG1160         143 VPISAEHGRGIGDLLDAVLELLP  165 (444)
T ss_pred             eEeehhhccCHHHHHHHHHhhcC
Confidence            99999999999999999999984

>KOG0074 consensus GTP-binding ADP-ribosylation factor-like protein ARL3 [General function prediction only]

Probab=99.83  E-value=5.1e-20  Score=118.07  Aligned_cols=160  Identities=21%  Similarity=0.253  Sum_probs=118.7

Q ss_pred             CceeEEEEEcCCCCCHHHHHHHHhhCCCCCCCCCceeeeeeEEEEECCeEEEEEEEeCCCccccccccccCcCCCcEEEE
Q 036449            4 SRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFIL   83 (197)
Q Consensus         4 ~~~~~i~v~G~~~~GKstli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~   83 (197)
                      .+.+||+++|-.++||||++..+.+..... ..||.+- ....+..++ .+.+++||.+|+...+..|..|+.+.|++||
T Consensus        15 ~rEirilllGldnAGKTT~LKqL~sED~~h-ltpT~GF-n~k~v~~~g-~f~LnvwDiGGqr~IRpyWsNYyenvd~lIy   91 (185)
T KOG0074|consen   15 RREIRILLLGLDNAGKTTFLKQLKSEDPRH-LTPTNGF-NTKKVEYDG-TFHLNVWDIGGQRGIRPYWSNYYENVDGLIY   91 (185)
T ss_pred             cceEEEEEEecCCCcchhHHHHHccCChhh-ccccCCc-ceEEEeecC-cEEEEEEecCCccccchhhhhhhhccceEEE
Confidence            578999999999999999999988765432 3444432 233344443 5889999999999999999999999999999


Q ss_pred             EEeCCCchhHHHHHHHHHHHHhhhC-CCCCEEEEeeCCcccCCcccccCCCCCCcccHHHHHH--HHH-HhCCCceEEec
Q 036449           84 AFSLISKASYENVSKKWIPELKHYA-PGVPIILVGTKLDLRDDKQFFIDHPGAVPISTAQGEE--LRK-LIGAPAYIECS  159 (197)
Q Consensus        84 v~d~~~~~s~~~~~~~~~~~i~~~~-~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~--~~~-~~~~~~~~~~s  159 (197)
                      |+|.+|...|+++...+.+.+.... ...|+.+.+||.|+.-...          + .+.+..  ++- ..+...+-+||
T Consensus        92 VIDS~D~krfeE~~~el~ELleeeKl~~vpvlIfankQdlltaa~----------~-eeia~klnl~~lrdRswhIq~cs  160 (185)
T KOG0074|consen   92 VIDSTDEKRFEEISEELVELLEEEKLAEVPVLIFANKQDLLTAAK----------V-EEIALKLNLAGLRDRSWHIQECS  160 (185)
T ss_pred             EEeCCchHhHHHHHHHHHHHhhhhhhhccceeehhhhhHHHhhcc----------h-HHHHHhcchhhhhhceEEeeeCc
Confidence            9999999999998777777666554 6899999999999964321          1 111111  111 11122466799


Q ss_pred             cCCCCCHHHHHHHHHHHH
Q 036449          160 SKTQQNVKAVFDAAIRVV  177 (197)
Q Consensus       160 a~~~~~i~~l~~~i~~~~  177 (197)
                      |.+++|+..-.+|+.+..
T Consensus       161 als~eg~~dg~~wv~sn~  178 (185)
T KOG0074|consen  161 ALSLEGSTDGSDWVQSNP  178 (185)
T ss_pred             cccccCccCcchhhhcCC
Confidence            999999999988877654

>KOG4423 consensus GTP-binding protein-like, RAS superfamily [Signal transduction mechanisms]

Probab=99.83  E-value=2.1e-22  Score=134.78  Aligned_cols=165  Identities=27%  Similarity=0.448  Sum_probs=138.0

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhhCCCCCCCCCceeeeee-EEEEEC-CeEEEEEEEeCCCccccccccccCcCCCcEEEEE
Q 036449            7 IKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFS-ANVVVN-GSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILA   84 (197)
Q Consensus         7 ~~i~v~G~~~~GKstli~~~~~~~~~~~~~~~~~~~~~-~~~~~~-~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v   84 (197)
                      ++++|+|..|+|||+++.+++...++..|..|++..+. .....+ ...+++++||..||++|..+...+++.+++..+|
T Consensus        26 ~k~lVig~~~vgkts~i~ryv~~nfs~~yRAtIgvdfalkVl~wdd~t~vRlqLwdIagQerfg~mtrVyykea~~~~iV  105 (229)
T KOG4423|consen   26 FKVLVIGDLGVGKTSSIKRYVHQNFSYHYRATIGVDFALKVLQWDDKTIVRLQLWDIAGQERFGNMTRVYYKEAHGAFIV  105 (229)
T ss_pred             hhhheeeeccccchhHHHHHHHHHHHHHHHHHHhHHHHHHHhccChHHHHHHHHhcchhhhhhcceEEEEecCCcceEEE
Confidence            78999999999999999999999998888888865553 223333 3446889999999999999999999999999999


Q ss_pred             EeCCCchhHHHHHHHHHHHHhhhC--C---CCCEEEEeeCCcccCCcccccCCCCCCcccHHHHHHHHHHhCCCceEEec
Q 036449           85 FSLISKASYENVSKKWIPELKHYA--P---GVPIILVGTKLDLRDDKQFFIDHPGAVPISTAQGEELRKLIGAPAYIECS  159 (197)
Q Consensus        85 ~d~~~~~s~~~~~~~~~~~i~~~~--~---~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s  159 (197)
                      +|+++..+|+.. ..|.+.+-...  |   -.|+++.+||||+.+...         ........++.++.++...+++|
T Consensus       106 fdvt~s~tfe~~-skwkqdldsk~qLpng~Pv~~vllankCd~e~~a~---------~~~~~~~d~f~kengf~gwtets  175 (229)
T KOG4423|consen  106 FDVTRSLTFEPV-SKWKQDLDSKLQLPNGTPVPCVLLANKCDQEKSAK---------NEATRQFDNFKKENGFEGWTETS  175 (229)
T ss_pred             EEccccccccHH-HHHHHhccCcccCCCCCcchheeccchhccChHhh---------hhhHHHHHHHHhccCccceeeec
Confidence            999999999998 78988887765  3   367899999999977542         12235566888899998999999


Q ss_pred             cCCCCCHHHHHHHHHHHHcCCC
Q 036449          160 SKTQQNVKAVFDAAIRVVLQPP  181 (197)
Q Consensus       160 a~~~~~i~~l~~~i~~~~~~~~  181 (197)
                      ++.+.++.|.-..+++++.-+.
T Consensus       176 ~Kenkni~Ea~r~lVe~~lvnd  197 (229)
T KOG4423|consen  176 AKENKNIPEAQRELVEKILVND  197 (229)
T ss_pred             cccccChhHHHHHHHHHHHhhc
Confidence            9999999999999999876654

>PRK04004 translation initiation factor IF-2; Validated

Probab=99.82  E-value=3.4e-19  Score=143.43  Aligned_cols=167  Identities=20%  Similarity=0.157  Sum_probs=103.0

Q ss_pred             CceeEEEEEcCCCCCHHHHHHHHhhCCCCCCCCCc----eeeeeeEEEEE---CCeE-----E-----EEEEEeCCCccc
Q 036449            4 SRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPT----VFDNFSANVVV---NGST-----V-----NLGLWDTAGQED   66 (197)
Q Consensus         4 ~~~~~i~v~G~~~~GKstli~~~~~~~~~~~~~~~----~~~~~~~~~~~---~~~~-----~-----~~~i~D~~G~~~   66 (197)
                      .+...|+++|++++|||||++++.+..........    .+..+......   .+..     .     .+.+|||||++.
T Consensus         4 ~R~p~V~i~Gh~~~GKTSLl~~l~~~~v~~~~~g~itq~ig~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~iDTPG~e~   83 (586)
T PRK04004          4 LRQPIVVVLGHVDHGKTTLLDKIRGTAVAAKEAGGITQHIGATEVPIDVIEKIAGPLKKPLPIKLKIPGLLFIDTPGHEA   83 (586)
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHhCcccccCCCCceEEeeceeeccccccccccceeccccccccccCCEEEEECCChHH
Confidence            45678999999999999999999876554333322    22211111000   0111     1     167999999999


Q ss_pred             cccccccCcCCCcEEEEEEeCCC---chhHHHHHHHHHHHHhhhCCCCCEEEEeeCCcccCCcccccCCCCC-------C
Q 036449           67 YNRLRPLSYRGADVFILAFSLIS---KASYENVSKKWIPELKHYAPGVPIILVGTKLDLRDDKQFFIDHPGA-------V  136 (197)
Q Consensus        67 ~~~~~~~~~~~~~~~i~v~d~~~---~~s~~~~~~~~~~~i~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~-------~  136 (197)
                      |..++...+..+|++++|+|+++   +++++.+     ..+...  +.|+++++||+|+..........+..       .
T Consensus        84 f~~~~~~~~~~aD~~IlVvDa~~g~~~qt~e~i-----~~~~~~--~vpiIvviNK~D~~~~~~~~~~~~~~e~~~~~~~  156 (586)
T PRK04004         84 FTNLRKRGGALADIAILVVDINEGFQPQTIEAI-----NILKRR--KTPFVVAANKIDRIPGWKSTEDAPFLESIEKQSQ  156 (586)
T ss_pred             HHHHHHHhHhhCCEEEEEEECCCCCCHhHHHHH-----HHHHHc--CCCEEEEEECcCCchhhhhhcCchHHHHHhhhhH
Confidence            99888888889999999999998   4444433     223332  78999999999985321100000000       0


Q ss_pred             ccc------HHHHHHHHHH--------------hCCCceEEeccCCCCCHHHHHHHHHHHH
Q 036449          137 PIS------TAQGEELRKL--------------IGAPAYIECSSKTQQNVKAVFDAAIRVV  177 (197)
Q Consensus       137 ~~~------~~~~~~~~~~--------------~~~~~~~~~sa~~~~~i~~l~~~i~~~~  177 (197)
                      .+.      ..+...+...              .+..+++++||++|.|+++++..+...+
T Consensus       157 ~v~~~f~~~l~ev~~~L~~~g~~~e~~~~~~~~~~~v~ivpiSA~tGeGi~dLl~~i~~~~  217 (586)
T PRK04004        157 RVQQELEEKLYELIGQLSELGFSADRFDRVKDFTKTVAIVPVSAKTGEGIPDLLMVLAGLA  217 (586)
T ss_pred             HHHHHHHHHHHHHHHHHHhcCCChhhhhhhhccCCCceEeeccCCCCCChHHHHHHHHHHH
Confidence            000      0000011111              1234789999999999999999887543

>cd01884 EF_Tu EF-Tu subfamily

Probab=99.82  E-value=4.2e-19  Score=124.85  Aligned_cols=150  Identities=21%  Similarity=0.210  Sum_probs=95.5

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHhhCCCC------CCC-----CCc---eeeee-eEEEEECCeEEEEEEEeCCCccccccc
Q 036449            6 FIKCVTVGDGAVGKTCLLISYTSNTFP------TDY-----VPT---VFDNF-SANVVVNGSTVNLGLWDTAGQEDYNRL   70 (197)
Q Consensus         6 ~~~i~v~G~~~~GKstli~~~~~~~~~------~~~-----~~~---~~~~~-~~~~~~~~~~~~~~i~D~~G~~~~~~~   70 (197)
                      .++|+++|+.++|||||+++++.....      ..+     .+.   .+... .....+.....++.++||||+..|...
T Consensus         2 ~~ni~iiGh~~~GKTTL~~~Ll~~~~~~g~~~~~~~~~~d~~~~E~~rg~Ti~~~~~~~~~~~~~i~~iDtPG~~~~~~~   81 (195)
T cd01884           2 HVNVGTIGHVDHGKTTLTAAITKVLAKKGGAKFKKYDEIDKAPEEKARGITINTAHVEYETANRHYAHVDCPGHADYIKN   81 (195)
T ss_pred             cEEEEEECCCCCCHHHHHHHHHHHHHhcccccccccccccCChhhhhcCccEEeeeeEecCCCeEEEEEECcCHHHHHHH
Confidence            589999999999999999999753100      000     000   00000 111223333456789999999888776


Q ss_pred             cccCcCCCcEEEEEEeCCCchhHHHHHHHHHHHHhhhCCCCC-EEEEeeCCcccCCcccccCCCCCCcccHHHHHHHHHH
Q 036449           71 RPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVP-IILVGTKLDLRDDKQFFIDHPGAVPISTAQGEELRKL  149 (197)
Q Consensus        71 ~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~~-~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~  149 (197)
                      ....+..+|++++|+|++.+-.-+.  ...+..+...  +.| +++++||+|+.....       ......++...+...
T Consensus        82 ~~~~~~~~D~~ilVvda~~g~~~~~--~~~~~~~~~~--~~~~iIvviNK~D~~~~~~-------~~~~~~~~i~~~l~~  150 (195)
T cd01884          82 MITGAAQMDGAILVVSATDGPMPQT--REHLLLARQV--GVPYIVVFLNKADMVDDEE-------LLELVEMEVRELLSK  150 (195)
T ss_pred             HHHHhhhCCEEEEEEECCCCCcHHH--HHHHHHHHHc--CCCcEEEEEeCCCCCCcHH-------HHHHHHHHHHHHHHH
Confidence            6777889999999999987643332  2344444444  566 788999999863221       011122345555555


Q ss_pred             hCC----CceEEeccCCCCCH
Q 036449          150 IGA----PAYIECSSKTQQNV  166 (197)
Q Consensus       150 ~~~----~~~~~~sa~~~~~i  166 (197)
                      .+.    .+++++||++|.|+
T Consensus       151 ~g~~~~~v~iipiSa~~g~n~  171 (195)
T cd01884         151 YGFDGDNTPIVRGSALKALEG  171 (195)
T ss_pred             hcccccCCeEEEeeCccccCC
Confidence            443    47999999999874

This subfamily includes orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts. It is one of several GTP-binding translation factors found in the larger family of GTP-binding elongation factors. The eukaryotic counterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this family. EF-Tu is one of the most abundant proteins in bacteria, as well as, one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.

>cd01876 YihA_EngB The YihA (EngB) subfamily

Probab=99.82  E-value=3.6e-19  Score=122.63  Aligned_cols=155  Identities=17%  Similarity=0.130  Sum_probs=96.6

Q ss_pred             EEEEEcCCCCCHHHHHHHHhhCCCCCCCCCceeeeeeE-EEEECCeEEEEEEEeCCCccc----------cccccccCc-
Q 036449            8 KCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSA-NVVVNGSTVNLGLWDTAGQED----------YNRLRPLSY-   75 (197)
Q Consensus         8 ~i~v~G~~~~GKstli~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~i~D~~G~~~----------~~~~~~~~~-   75 (197)
                      .|+++|.+|+|||||++.+.++.+.....++.+..... ....++   .+.+||+||...          +......++ 
T Consensus         1 ~i~l~G~~g~GKTtL~~~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~~~D~~g~~~~~~~~~~~~~~~~~~~~~~~   77 (170)
T cd01876           1 EIAFAGRSNVGKSSLINALTNRKKLARTSKTPGKTQLINFFNVND---KFRLVDLPGYGYAKVSKEVKEKWGKLIEEYLE   77 (170)
T ss_pred             CEEEEcCCCCCHHHHHHHHhcCCceeeecCCCCcceeEEEEEccC---eEEEecCCCccccccCHHHHHHHHHHHHHHHH
Confidence            38999999999999999999665544444443222221 222222   678999999532          222222233 


Q ss_pred             --CCCcEEEEEEeCCCchhHHHHHHHHHHHHhhhCCCCCEEEEeeCCcccCCcccccCCCCCCcccHHHHHHHHH-HhCC
Q 036449           76 --RGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPISTAQGEELRK-LIGA  152 (197)
Q Consensus        76 --~~~~~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~  152 (197)
                        .+.+++++++|.++..+....  .....+...  +.|+++++||+|+.....        ............+ ....
T Consensus        78 ~~~~~~~~~~v~d~~~~~~~~~~--~~~~~l~~~--~~~vi~v~nK~D~~~~~~--------~~~~~~~~~~~l~~~~~~  145 (170)
T cd01876          78 NRENLKGVVLLIDSRHGPTEIDL--EMLDWLEEL--GIPFLVVLTKADKLKKSE--------LAKALKEIKKELKLFEID  145 (170)
T ss_pred             hChhhhEEEEEEEcCcCCCHhHH--HHHHHHHHc--CCCEEEEEEchhcCChHH--------HHHHHHHHHHHHHhccCC
Confidence              346788999999876432221  233334333  589999999999954321        0011122222222 2344


Q ss_pred             CceEEeccCCCCCHHHHHHHHHHHH
Q 036449          153 PAYIECSSKTQQNVKAVFDAAIRVV  177 (197)
Q Consensus       153 ~~~~~~sa~~~~~i~~l~~~i~~~~  177 (197)
                      .+++++||+++.++.+++++|.+.+
T Consensus       146 ~~~~~~Sa~~~~~~~~l~~~l~~~~  170 (170)
T cd01876         146 PPIILFSSLKGQGIDELRALIEKWL  170 (170)
T ss_pred             CceEEEecCCCCCHHHHHHHHHHhC
Confidence            4799999999999999999998753

This subfamily of GTPases is typified by the E. coli YihA, an essential protein involved in cell division control. YihA and its orthologs are small proteins that typically contain less than 200 amino acid residues and consists of the GTPase domain only (some of the eukaryotic homologs contain an N-terminal extension of about 120 residues that might be involved in organellar targeting). Homologs of yihA are found in most Gram-positive and Gram-negative pathogenic bacteria, with the exception of Mycobacterium tuberculosis. The broad-spectrum nature of YihA and its essentiality for cell viability in bacteria make it an attractive antibacterial target.

>cd04166 CysN_ATPS CysN_ATPS subfamily

Probab=99.81  E-value=1.5e-19  Score=128.85  Aligned_cols=151  Identities=18%  Similarity=0.093  Sum_probs=92.5

Q ss_pred             EEEEEcCCCCCHHHHHHHHhhCCCCCC--------------------------------CCCceeeeeeEEEEECCeEEE
Q 036449            8 KCVTVGDGAVGKTCLLISYTSNTFPTD--------------------------------YVPTVFDNFSANVVVNGSTVN   55 (197)
Q Consensus         8 ~i~v~G~~~~GKstli~~~~~~~~~~~--------------------------------~~~~~~~~~~~~~~~~~~~~~   55 (197)
                      ||+++|++|+|||||+++++...-.-.                                ...++.+.....+...+  ..
T Consensus         1 ~i~iiG~~~~GKStL~~~Ll~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~rg~T~~~~~~~~~~~~--~~   78 (208)
T cd04166           1 RFLTCGSVDDGKSTLIGRLLYDSKSIFEDQLAALESKSCGTGGEPLDLALLVDGLQAEREQGITIDVAYRYFSTPK--RK   78 (208)
T ss_pred             CEEEEECCCCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCCCcceeeeccCChhhhcCCcCeecceeEEecCC--ce
Confidence            689999999999999999875321100                                01111111111222233  46


Q ss_pred             EEEEeCCCccccccccccCcCCCcEEEEEEeCCCchhHHHHHHHHHHHHhhhCCCCCEEEEeeCCcccCCcccccCCCCC
Q 036449           56 LGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLRDDKQFFIDHPGA  135 (197)
Q Consensus        56 ~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~  135 (197)
                      +.+|||||+++|.......+..+|++|+|+|++++..-+..  .....+... ...++++|+||+|+.+...      ..
T Consensus        79 ~~liDTpG~~~~~~~~~~~~~~ad~~llVvD~~~~~~~~~~--~~~~~~~~~-~~~~iIvviNK~D~~~~~~------~~  149 (208)
T cd04166          79 FIIADTPGHEQYTRNMVTGASTADLAILLVDARKGVLEQTR--RHSYILSLL-GIRHVVVAVNKMDLVDYSE------EV  149 (208)
T ss_pred             EEEEECCcHHHHHHHHHHhhhhCCEEEEEEECCCCccHhHH--HHHHHHHHc-CCCcEEEEEEchhcccCCH------HH
Confidence            77999999988766566678899999999999876432222  222222222 1235788999999964221      00


Q ss_pred             CcccHHHHHHHHHHhCC--CceEEeccCCCCCHHHH
Q 036449          136 VPISTAQGEELRKLIGA--PAYIECSSKTQQNVKAV  169 (197)
Q Consensus       136 ~~~~~~~~~~~~~~~~~--~~~~~~sa~~~~~i~~l  169 (197)
                      ......+.+.+...++.  .+++++||++|.|+.+.
T Consensus       150 ~~~i~~~~~~~~~~~~~~~~~ii~iSA~~g~ni~~~  185 (208)
T cd04166         150 FEEIVADYLAFAAKLGIEDITFIPISALDGDNVVSR  185 (208)
T ss_pred             HHHHHHHHHHHHHHcCCCCceEEEEeCCCCCCCccC
Confidence            00112344555666664  25899999999998753

CysN, together with protein CysD, form the ATP sulfurylase (ATPS) complex in some bacteria and lower eukaryotes. ATPS catalyzes the production of ATP sulfurylase (APS) and pyrophosphate (PPi) from ATP and sulfate. CysD, which catalyzes ATP hydrolysis, is a member of the ATP pyrophosphatase (ATP PPase) family. CysN hydrolysis of GTP is required for CysD hydrolysis of ATP; however, CysN hydrolysis of GTP is not dependent on CysD hydrolysis of ATP. CysN is an example of lateral gene transfer followed by acquisition of new function. In many organisms, an ATPS exists which is not GTP-dependent and shares no sequence or structural similarity to CysN.

>TIGR01394 TypA_BipA GTP-binding protein TypA/BipA

Probab=99.81  E-value=3.9e-19  Score=143.17  Aligned_cols=159  Identities=17%  Similarity=0.163  Sum_probs=108.5

Q ss_pred             EEEEEcCCCCCHHHHHHHHhh--CCCCCCCCCc------------eeeee-eEEEEECCeEEEEEEEeCCCccccccccc
Q 036449            8 KCVTVGDGAVGKTCLLISYTS--NTFPTDYVPT------------VFDNF-SANVVVNGSTVNLGLWDTAGQEDYNRLRP   72 (197)
Q Consensus         8 ~i~v~G~~~~GKstli~~~~~--~~~~~~~~~~------------~~~~~-~~~~~~~~~~~~~~i~D~~G~~~~~~~~~   72 (197)
                      +|+++|+.++|||||+.+++.  +.+.......            .+... .....+....+.+++|||||+.+|.....
T Consensus         3 NIaIiGHvd~GKTTLv~~LL~~sg~~~~~~~v~~~~~D~~~~ErerGiTI~~~~~~v~~~~~kinlIDTPGh~DF~~ev~   82 (594)
T TIGR01394         3 NIAIIAHVDHGKTTLVDALLKQSGTFRANEAVAERVMDSNDLERERGITILAKNTAIRYNGTKINIVDTPGHADFGGEVE   82 (594)
T ss_pred             EEEEEcCCCCCHHHHHHHHHHhcCCCcccccceeecccCchHHHhCCccEEeeeEEEEECCEEEEEEECCCHHHHHHHHH
Confidence            799999999999999999986  3332211000            01111 11122222347888999999999998888


Q ss_pred             cCcCCCcEEEEEEeCCCchhHHHHHHHHHHHHhhhCCCCCEEEEeeCCcccCCcccccCCCCCCcccHHHHHHHHHH---
Q 036449           73 LSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPISTAQGEELRKL---  149 (197)
Q Consensus        73 ~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~---  149 (197)
                      .++..+|++++|+|+++...-+ . ..|+..+...  ++|+++|+||+|+...+.         ....++...+...   
T Consensus        83 ~~l~~aD~alLVVDa~~G~~~q-T-~~~l~~a~~~--~ip~IVviNKiD~~~a~~---------~~v~~ei~~l~~~~g~  149 (594)
T TIGR01394        83 RVLGMVDGVLLLVDASEGPMPQ-T-RFVLKKALEL--GLKPIVVINKIDRPSARP---------DEVVDEVFDLFAELGA  149 (594)
T ss_pred             HHHHhCCEEEEEEeCCCCCcHH-H-HHHHHHHHHC--CCCEEEEEECCCCCCcCH---------HHHHHHHHHHHHhhcc
Confidence            8999999999999998754322 2 3555555554  789999999999865321         0112233333322   


Q ss_pred             ----hCCCceEEeccCCCC----------CHHHHHHHHHHHHcCC
Q 036449          150 ----IGAPAYIECSSKTQQ----------NVKAVFDAAIRVVLQP  180 (197)
Q Consensus       150 ----~~~~~~~~~sa~~~~----------~i~~l~~~i~~~~~~~  180 (197)
                          ..+ +++.+||++|.          |+..+|+.|++.+..+
T Consensus       150 ~~e~l~~-pvl~~SA~~g~~~~~~~~~~~gi~~Lld~Iv~~lP~P  193 (594)
T TIGR01394       150 DDEQLDF-PIVYASGRAGWASLDLDDPSDNMAPLFDAIVRHVPAP  193 (594)
T ss_pred             ccccccC-cEEechhhcCcccccCcccccCHHHHHHHHHHhCCCC
Confidence                234 79999999995          7999999999988655

This bacterial (and Arabidopsis) protein, termed TypA or BipA, a GTP-binding protein, is phosphorylated on a tyrosine residue under some cellular conditions. Mutants show altered regulation of some pathways, but the precise function is unknown.

>TIGR03680 eif2g_arch translation initiation factor 2 subunit gamma

Probab=99.81  E-value=2.2e-19  Score=139.69  Aligned_cols=164  Identities=18%  Similarity=0.119  Sum_probs=103.6

Q ss_pred             CceeEEEEEcCCCCCHHHHHHHHhhCCCCC---C--CCCceeee-----------------eeEEEEECC------eEEE
Q 036449            4 SRFIKCVTVGDGAVGKTCLLISYTSNTFPT---D--YVPTVFDN-----------------FSANVVVNG------STVN   55 (197)
Q Consensus         4 ~~~~~i~v~G~~~~GKstli~~~~~~~~~~---~--~~~~~~~~-----------------~~~~~~~~~------~~~~   55 (197)
                      .+.++|+++|+.++|||||++++.......   +  .--|....                 +......++      ....
T Consensus         2 ~~~~~i~iiG~~~~GKSTL~~~Lt~~~~d~~~~e~~rg~Ti~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (406)
T TIGR03680         2 QPEVNIGMVGHVDHGKTTLTKALTGVWTDTHSEELKRGISIRLGYADAEIYKCPECDGPECYTTEPVCPNCGSETELLRR   81 (406)
T ss_pred             CceEEEEEEccCCCCHHHHHHHHhCeecccCHhHHHcCceeEecccccccccccccCccccccccccccccccccccccE
Confidence            467999999999999999999986432111   0  00000000                 000000011      1357


Q ss_pred             EEEEeCCCccccccccccCcCCCcEEEEEEeCCCchhHHHHHHHHHHHHhhhCCCCCEEEEeeCCcccCCcccccCCCCC
Q 036449           56 LGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLRDDKQFFIDHPGA  135 (197)
Q Consensus        56 ~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~  135 (197)
                      +++||+||+++|...+......+|++++|+|++++...... ...+..+... ...|+++++||+|+.+...        
T Consensus        82 i~liDtPGh~~f~~~~~~g~~~aD~aIlVVDa~~g~~~~qt-~e~l~~l~~~-gi~~iIVvvNK~Dl~~~~~--------  151 (406)
T TIGR03680        82 VSFVDAPGHETLMATMLSGAALMDGALLVIAANEPCPQPQT-KEHLMALEII-GIKNIVIVQNKIDLVSKEK--------  151 (406)
T ss_pred             EEEEECCCHHHHHHHHHHHHHHCCEEEEEEECCCCccccch-HHHHHHHHHc-CCCeEEEEEEccccCCHHH--------
Confidence            88999999999988777778889999999999975311111 1222233222 1246899999999975321        


Q ss_pred             CcccHHHHHHHHHHh---CCCceEEeccCCCCCHHHHHHHHHHHHc
Q 036449          136 VPISTAQGEELRKLI---GAPAYIECSSKTQQNVKAVFDAAIRVVL  178 (197)
Q Consensus       136 ~~~~~~~~~~~~~~~---~~~~~~~~sa~~~~~i~~l~~~i~~~~~  178 (197)
                      .....++...+....   +. +++++||++|+|+++++++|.+.+.
T Consensus       152 ~~~~~~~i~~~l~~~~~~~~-~ii~vSA~~g~gi~~L~e~L~~~l~  196 (406)
T TIGR03680       152 ALENYEEIKEFVKGTVAENA-PIIPVSALHNANIDALLEAIEKFIP  196 (406)
T ss_pred             HHHHHHHHHhhhhhcccCCC-eEEEEECCCCCChHHHHHHHHHhCC
Confidence            001123333443332   33 7999999999999999999998764

eIF-2 functions in the early steps of protein synthesis by forming a ternary complex with GTP and initiator tRNA.

>COG1160 Predicted GTPases [General function prediction only]

Probab=99.81  E-value=7.5e-19  Score=133.63  Aligned_cols=163  Identities=21%  Similarity=0.239  Sum_probs=119.9

Q ss_pred             ceeEEEEEcCCCCCHHHHHHHHhhCC--CCCCCCCceeeeeeEEEEECCeEEEEEEEeCCCcc----------cccccc-
Q 036449            5 RFIKCVTVGDGAVGKTCLLISYTSNT--FPTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQE----------DYNRLR-   71 (197)
Q Consensus         5 ~~~~i~v~G~~~~GKstli~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~----------~~~~~~-   71 (197)
                      ..++|+++|.|++|||||+|++++..  .......|+.+.....+..+++.+  .++||.|..          .|.... 
T Consensus       177 ~~ikiaiiGrPNvGKSsLiN~ilgeeR~Iv~~~aGTTRD~I~~~~e~~~~~~--~liDTAGiRrk~ki~e~~E~~Sv~rt  254 (444)
T COG1160         177 DPIKIAIIGRPNVGKSSLINAILGEERVIVSDIAGTTRDSIDIEFERDGRKY--VLIDTAGIRRKGKITESVEKYSVART  254 (444)
T ss_pred             CceEEEEEeCCCCCchHHHHHhccCceEEecCCCCccccceeeeEEECCeEE--EEEECCCCCcccccccceEEEeehhh
Confidence            46999999999999999999999754  456778888888888888888554  599999933          232222 


Q ss_pred             ccCcCCCcEEEEEEeCCCchhHHHHHHHHHHHHhhhCCCCCEEEEeeCCcccCCcccccCCCCCCcccHHHHHHHHHHhC
Q 036449           72 PLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPISTAQGEELRKLIG  151 (197)
Q Consensus        72 ~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  151 (197)
                      ...+..++.+++|+|++.+-+-++.  .....+...  +.++++|+||.|+.+.+.      .....-..+........+
T Consensus       255 ~~aI~~a~vvllviDa~~~~~~qD~--~ia~~i~~~--g~~~vIvvNKWDl~~~~~------~~~~~~k~~i~~~l~~l~  324 (444)
T COG1160         255 LKAIERADVVLLVIDATEGISEQDL--RIAGLIEEA--GRGIVIVVNKWDLVEEDE------ATMEEFKKKLRRKLPFLD  324 (444)
T ss_pred             HhHHhhcCEEEEEEECCCCchHHHH--HHHHHHHHc--CCCeEEEEEccccCCchh------hHHHHHHHHHHHHhcccc
Confidence            2246679999999999998877765  556666666  799999999999977532      000011122333334445


Q ss_pred             CCceEEeccCCCCCHHHHHHHHHHHHcC
Q 036449          152 APAYIECSSKTQQNVKAVFDAAIRVVLQ  179 (197)
Q Consensus       152 ~~~~~~~sa~~~~~i~~l~~~i~~~~~~  179 (197)
                      ..+.+.+||+++.++.++|+.+.+....
T Consensus       325 ~a~i~~iSA~~~~~i~~l~~~i~~~~~~  352 (444)
T COG1160         325 FAPIVFISALTGQGLDKLFEAIKEIYEC  352 (444)
T ss_pred             CCeEEEEEecCCCChHHHHHHHHHHHHH
Confidence            5588999999999999999998875444

>PRK10512 selenocysteinyl-tRNA-specific translation factor; Provisional

Probab=99.81  E-value=8.5e-19  Score=141.84  Aligned_cols=160  Identities=18%  Similarity=0.188  Sum_probs=104.2

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhhCC---CCCCC--CCceeeeeeEEEEECCeEEEEEEEeCCCccccccccccCcCCCcEE
Q 036449            7 IKCVTVGDGAVGKTCLLISYTSNT---FPTDY--VPTVFDNFSANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVF   81 (197)
Q Consensus         7 ~~i~v~G~~~~GKstli~~~~~~~---~~~~~--~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~   81 (197)
                      +-|.++|+.++|||||++++.+..   +..+.  ..|....+......++  ..+.+||+||++.|.......+..+|++
T Consensus         1 ~ii~~~GhvdhGKTtLi~aLtg~~~dr~~eE~~rGiTI~l~~~~~~~~~g--~~i~~IDtPGhe~fi~~m~~g~~~~D~~   78 (614)
T PRK10512          1 MIIATAGHVDHGKTTLLQAITGVNADRLPEEKKRGMTIDLGYAYWPQPDG--RVLGFIDVPGHEKFLSNMLAGVGGIDHA   78 (614)
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCCCccchhcccCCceEEeeeEEEecCCC--cEEEEEECCCHHHHHHHHHHHhhcCCEE
Confidence            358899999999999999998532   22221  1222111111111123  3478999999999877766778899999


Q ss_pred             EEEEeCCCchhHHHHHHHHHHHHhhhCCCCC-EEEEeeCCcccCCcccccCCCCCCcccHHHHHHHHHHhCC--CceEEe
Q 036449           82 ILAFSLISKASYENVSKKWIPELKHYAPGVP-IILVGTKLDLRDDKQFFIDHPGAVPISTAQGEELRKLIGA--PAYIEC  158 (197)
Q Consensus        82 i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~~-~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~  158 (197)
                      ++|+|++++..-+..  ..+..+...  +.| +++|+||+|+.+...        .....++...+....+.  .+++++
T Consensus        79 lLVVda~eg~~~qT~--ehl~il~~l--gi~~iIVVlNKiDlv~~~~--------~~~v~~ei~~~l~~~~~~~~~ii~V  146 (614)
T PRK10512         79 LLVVACDDGVMAQTR--EHLAILQLT--GNPMLTVALTKADRVDEAR--------IAEVRRQVKAVLREYGFAEAKLFVT  146 (614)
T ss_pred             EEEEECCCCCcHHHH--HHHHHHHHc--CCCeEEEEEECCccCCHHH--------HHHHHHHHHHHHHhcCCCCCcEEEE
Confidence            999999875332222  223334333  455 579999999965321        00112344455444442  379999


Q ss_pred             ccCCCCCHHHHHHHHHHHHcCC
Q 036449          159 SSKTQQNVKAVFDAAIRVVLQP  180 (197)
Q Consensus       159 sa~~~~~i~~l~~~i~~~~~~~  180 (197)
                      ||++|.|++++++.|.+.....
T Consensus       147 SA~tG~gI~~L~~~L~~~~~~~  168 (614)
T PRK10512        147 AATEGRGIDALREHLLQLPERE  168 (614)
T ss_pred             eCCCCCCCHHHHHHHHHhhccc
Confidence            9999999999999998765543

>PRK10218 GTP-binding protein; Provisional

Probab=99.81  E-value=1.2e-18  Score=140.30  Aligned_cols=162  Identities=15%  Similarity=0.137  Sum_probs=110.8

Q ss_pred             ceeEEEEEcCCCCCHHHHHHHHhh--CCCCCCCC------------Cceeee-eeEEEEECCeEEEEEEEeCCCcccccc
Q 036449            5 RFIKCVTVGDGAVGKTCLLISYTS--NTFPTDYV------------PTVFDN-FSANVVVNGSTVNLGLWDTAGQEDYNR   69 (197)
Q Consensus         5 ~~~~i~v~G~~~~GKstli~~~~~--~~~~~~~~------------~~~~~~-~~~~~~~~~~~~~~~i~D~~G~~~~~~   69 (197)
                      +.-+|+++|+.++|||||+.+++.  +.+.....            .+.+.. ......+....+.+++|||||+..|..
T Consensus         4 ~iRnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~v~D~~~~E~erGiTi~~~~~~i~~~~~~inliDTPG~~df~~   83 (607)
T PRK10218          4 KLRNIAIIAHVDHGKTTLVDKLLQQSGTFDSRAETQERVMDSNDLEKERGITILAKNTAIKWNDYRINIVDTPGHADFGG   83 (607)
T ss_pred             CceEEEEECCCCCcHHHHHHHHHHhcCCcccccccceeeeccccccccCceEEEEEEEEEecCCEEEEEEECCCcchhHH
Confidence            457899999999999999999986  33332211            111111 122233344457899999999999999


Q ss_pred             ccccCcCCCcEEEEEEeCCCchhHHHHHHHHHHHHhhhCCCCCEEEEeeCCcccCCcccccCCCCCCcccHHHHHHHHHH
Q 036449           70 LRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPISTAQGEELRKL  149 (197)
Q Consensus        70 ~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~  149 (197)
                      .+..++..+|++|+|+|+++....+..  .++......  +.|.++++||+|+...+.         ....++...+...
T Consensus        84 ~v~~~l~~aDg~ILVVDa~~G~~~qt~--~~l~~a~~~--gip~IVviNKiD~~~a~~---------~~vl~ei~~l~~~  150 (607)
T PRK10218         84 EVERVMSMVDSVLLVVDAFDGPMPQTR--FVTKKAFAY--GLKPIVVINKVDRPGARP---------DWVVDQVFDLFVN  150 (607)
T ss_pred             HHHHHHHhCCEEEEEEecccCccHHHH--HHHHHHHHc--CCCEEEEEECcCCCCCch---------hHHHHHHHHHHhc
Confidence            888999999999999999886444332  333333333  789999999999865331         0112233333211


Q ss_pred             -------hCCCceEEeccCCCC----------CHHHHHHHHHHHHcCC
Q 036449          150 -------IGAPAYIECSSKTQQ----------NVKAVFDAAIRVVLQP  180 (197)
Q Consensus       150 -------~~~~~~~~~sa~~~~----------~i~~l~~~i~~~~~~~  180 (197)
                             ..+ +++.+||++|.          ++..+++.|+..+..+
T Consensus       151 l~~~~~~~~~-PVi~~SA~~G~~~~~~~~~~~~i~~Lld~Ii~~iP~P  197 (607)
T PRK10218        151 LDATDEQLDF-PIVYASALNGIAGLDHEDMAEDMTPLYQAIVDHVPAP  197 (607)
T ss_pred             cCccccccCC-CEEEeEhhcCcccCCccccccchHHHHHHHHHhCCCC
Confidence                   223 78999999998          5889999988887655

>KOG1707 consensus Predicted Ras related/Rac-GTP binding protein [Defense mechanisms]

Probab=99.81  E-value=7.4e-20  Score=141.77  Aligned_cols=167  Identities=26%  Similarity=0.377  Sum_probs=122.1

Q ss_pred             CceeEEEEEcCCCCCHHHHHHHHhhCCCCCCCCCceeeeeeEEEEECCeEEEEEEEeCCCccccccccccCcCCCcEEEE
Q 036449            4 SRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFIL   83 (197)
Q Consensus         4 ~~~~~i~v~G~~~~GKstli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~   83 (197)
                      .+.+||+++|..|+||||||.++....|++..++-.. .+..-..+....+...+.|++..+.-+.....-++.+|++.+
T Consensus         7 ~kdVRIvliGD~G~GKtSLImSL~~eef~~~VP~rl~-~i~IPadvtPe~vpt~ivD~ss~~~~~~~l~~EirkA~vi~l   85 (625)
T KOG1707|consen    7 LKDVRIVLIGDEGVGKTSLIMSLLEEEFVDAVPRRLP-RILIPADVTPENVPTSIVDTSSDSDDRLCLRKEIRKADVICL   85 (625)
T ss_pred             ccceEEEEECCCCccHHHHHHHHHhhhccccccccCC-ccccCCccCcCcCceEEEecccccchhHHHHHHHhhcCEEEE
Confidence            4679999999999999999999999999876444432 222112222233557799998655444443455788999999


Q ss_pred             EEeCCCchhHHHHHHHHHHHHhhhC---CCCCEEEEeeCCcccCCcccccCCCCCCcc-cHHHHHHHHHHhCCCceEEec
Q 036449           84 AFSLISKASYENVSKKWIPELKHYA---PGVPIILVGTKLDLRDDKQFFIDHPGAVPI-STAQGEELRKLIGAPAYIECS  159 (197)
Q Consensus        84 v~d~~~~~s~~~~~~~~~~~i~~~~---~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~s  159 (197)
                      +|+++++++++.+...|++.++...   .++|+|+||||+|.......      ..+. ......+|.+   ...+++||
T Consensus        86 vyavd~~~T~D~ist~WLPlir~~~~~~~~~PVILvGNK~d~~~~~~~------s~e~~~~pim~~f~E---iEtciecS  156 (625)
T KOG1707|consen   86 VYAVDDESTVDRISTKWLPLIRQLFGDYHETPVILVGNKSDNGDNENN------SDEVNTLPIMIAFAE---IETCIECS  156 (625)
T ss_pred             EEecCChHHhhhhhhhhhhhhhcccCCCccCCEEEEeeccCCcccccc------chhHHHHHHHHHhHH---HHHHHhhh
Confidence            9999999999999999999999988   68999999999999765430      0000 0111122222   22589999


Q ss_pred             cCCCCCHHHHHHHHHHHHcCC
Q 036449          160 SKTQQNVKAVFDAAIRVVLQP  180 (197)
Q Consensus       160 a~~~~~i~~l~~~i~~~~~~~  180 (197)
                      |++..++.++|..-.+.+..+
T Consensus       157 A~~~~n~~e~fYyaqKaVihP  177 (625)
T KOG1707|consen  157 ALTLANVSELFYYAQKAVIHP  177 (625)
T ss_pred             hhhhhhhHhhhhhhhheeecc
Confidence            999999999999977776654

>cd04165 GTPBP1_like GTPBP1-like

Probab=99.81  E-value=2.8e-18  Score=123.14  Aligned_cols=156  Identities=16%  Similarity=0.132  Sum_probs=98.4

Q ss_pred             EEEEEcCCCCCHHHHHHHHhhCCCCCCCCCcee-----------------------eee-eEE-------------EEEC
Q 036449            8 KCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVF-----------------------DNF-SAN-------------VVVN   50 (197)
Q Consensus         8 ~i~v~G~~~~GKstli~~~~~~~~~~~~~~~~~-----------------------~~~-~~~-------------~~~~   50 (197)
                      ||+++|+.++|||||+.+|..+.+.........                       ... ...             ....
T Consensus         1 ~v~~~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~E~~~g~t~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~   80 (224)
T cd04165           1 RVAVVGNVDAGKSTLLGVLTQGELDNGRGKARLNLFRHKHEVESGRTSSVSNEILGFDSDGEVVNYPDNHLSESDIEICE   80 (224)
T ss_pred             CEEEECCCCCCHHHHHHHHHhCCcCCCCCeEEeehhhhhhhhhcCchhhhhhhhcccCCCCceecCCCCccccccceeee
Confidence            689999999999999999997665432110000                       000 000             0011


Q ss_pred             CeEEEEEEEeCCCccccccccccCc--CCCcEEEEEEeCCCchhHHHHHHHHHHHHhhhCCCCCEEEEeeCCcccCCccc
Q 036449           51 GSTVNLGLWDTAGQEDYNRLRPLSY--RGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLRDDKQF  128 (197)
Q Consensus        51 ~~~~~~~i~D~~G~~~~~~~~~~~~--~~~~~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~~~ivv~nK~D~~~~~~~  128 (197)
                      .....+.++|+||++.|.......+  ..+|++++|+|+..+..-.+  ..++..+...  ++|+++|+||+|+.+....
T Consensus        81 ~~~~~i~liDtpG~~~~~~~~~~~~~~~~~D~~llVvda~~g~~~~d--~~~l~~l~~~--~ip~ivvvNK~D~~~~~~~  156 (224)
T cd04165          81 KSSKLVTFIDLAGHERYLKTTLFGLTGYAPDYAMLVVAANAGIIGMT--KEHLGLALAL--NIPVFVVVTKIDLAPANIL  156 (224)
T ss_pred             eCCcEEEEEECCCcHHHHHHHHHhhcccCCCEEEEEEECCCCCcHHH--HHHHHHHHHc--CCCEEEEEECccccCHHHH
Confidence            1235678999999998865444334  36899999999987654333  3555666555  6899999999998643210


Q ss_pred             ccCCCCCCcccHHHHHHHHH-------------------------HhCCCceEEeccCCCCCHHHHHHHHHH
Q 036449          129 FIDHPGAVPISTAQGEELRK-------------------------LIGAPAYIECSSKTQQNVKAVFDAAIR  175 (197)
Q Consensus       129 ~~~~~~~~~~~~~~~~~~~~-------------------------~~~~~~~~~~sa~~~~~i~~l~~~i~~  175 (197)
                              .....+..++..                         .....+++.+||.+|.|++++...|..
T Consensus       157 --------~~~~~~l~~~L~~~g~~~~p~~~~~~~~~~~~~~~~~~~~~~pi~~vSavtg~Gi~~L~~~L~~  220 (224)
T cd04165         157 --------QETLKDLKRILKVPGVRKLPVPVKSDDDVVLAASNFSSERIVPIFQVSNVTGEGLDLLHAFLNL  220 (224)
T ss_pred             --------HHHHHHHHHHhcCCCccccceeeecccceeehhhcCCccccCcEEEeeCCCccCHHHHHHHHHh
Confidence                    011111222211                         111338999999999999999887643

Mammalian GTP binding protein 1 (GTPBP1), GTPBP2, and nematode homologs AGP-1 and CGP-1 are GTPases whose specific functions remain unknown. In mouse, GTPBP1 is expressed in macrophages, in smooth muscle cells of various tissues and in some neurons of the cerebral cortex; GTPBP2 tissue distribution appears to overlap that of GTPBP1. In human leukemia and macrophage cell lines, expression of both GTPBP1 and GTPBP2 is enhanced by interferon-gamma (IFN-gamma). The chromosomal location of both genes has been identified in humans, with GTPBP1 located in chromosome 22q12-13.1 and GTPBP2 located in chromosome 6p21-12. Human glioblastoma multiforme (GBM), a highly-malignant astrocytic glioma and the most common cancer in the central nervous system, has been linked to chromosomal deletions and a translocation on chromosome 6. The GBM translocation results in a fusion of GTPBP2 and PTPRZ1, a protein involved in oligodendrocyte differentiation, recovery, and

>cd04167 Snu114p Snu114p subfamily

Probab=99.81  E-value=4.1e-19  Score=127.12  Aligned_cols=112  Identities=21%  Similarity=0.238  Sum_probs=78.7

Q ss_pred             EEEEEcCCCCCHHHHHHHHhhCCCCCCC-----------CCce------eeee---eEEEEE---CCeEEEEEEEeCCCc
Q 036449            8 KCVTVGDGAVGKTCLLISYTSNTFPTDY-----------VPTV------FDNF---SANVVV---NGSTVNLGLWDTAGQ   64 (197)
Q Consensus         8 ~i~v~G~~~~GKstli~~~~~~~~~~~~-----------~~~~------~~~~---~~~~~~---~~~~~~~~i~D~~G~   64 (197)
                      +|+++|+.|+|||||+.+++........           ..+.      +...   .....+   ++..+.+.+|||||+
T Consensus         2 nv~iiG~~~~GKTtL~~~l~~~~~~~~~~~~~~~~~~~~~d~~~~e~~~giti~~~~~~~~~~~~~~~~~~i~iiDtpG~   81 (213)
T cd04167           2 NVAIAGHLHHGKTSLLDMLIEQTHDLTPSGKDGWKPLRYTDIRKDEQERGISIKSSPISLVLPDSKGKSYLFNIIDTPGH   81 (213)
T ss_pred             cEEEEcCCCCCHHHHHHHHHHhcCCCcccccccCCceeECCCCHHHHHcCccccccceeEEEEcCCCCEEEEEEEECCCC
Confidence            5899999999999999999875433210           0010      0010   001111   345688999999999


Q ss_pred             cccccccccCcCCCcEEEEEEeCCCchhHHHHHHHHHHHHhhhCCCCCEEEEeeCCccc
Q 036449           65 EDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLR  123 (197)
Q Consensus        65 ~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~~~ivv~nK~D~~  123 (197)
                      ..|......++..+|++++|+|+++..+...  ..++......  +.|+++|+||+|+.
T Consensus        82 ~~f~~~~~~~~~~aD~~llVvD~~~~~~~~~--~~~~~~~~~~--~~p~iiviNK~D~~  136 (213)
T cd04167          82 VNFMDEVAAALRLSDGVVLVVDVVEGVTSNT--ERLIRHAILE--GLPIVLVINKIDRL  136 (213)
T ss_pred             cchHHHHHHHHHhCCEEEEEEECCCCCCHHH--HHHHHHHHHc--CCCEEEEEECcccC
Confidence            9988777778889999999999988776643  2344443333  68999999999985

Snu114p is one of several proteins that make up the U5 small nuclear ribonucleoprotein (snRNP) particle. U5 is a component of the spliceosome, which catalyzes the splicing of pre-mRNA to remove introns. Snu114p is homologous to EF-2, but typically contains an additional N-terminal domain not found in Ef-2. This protein is part of the GTP translation factor family and the Ras superfamily, characterized by five G-box motifs.

>PRK04000 translation initiation factor IF-2 subunit gamma; Validated

Probab=99.80  E-value=7.4e-19  Score=136.66  Aligned_cols=166  Identities=17%  Similarity=0.094  Sum_probs=102.5

Q ss_pred             CCceeEEEEEcCCCCCHHHHHHHHhhCCCCCC-----CCCceeee-----------------eeEEEEEC--C----eEE
Q 036449            3 ASRFIKCVTVGDGAVGKTCLLISYTSNTFPTD-----YVPTVFDN-----------------FSANVVVN--G----STV   54 (197)
Q Consensus         3 ~~~~~~i~v~G~~~~GKstli~~~~~~~~~~~-----~~~~~~~~-----------------~~~~~~~~--~----~~~   54 (197)
                      ..+.++|+++|+.++|||||+.++........     .-.|....                 +......+  +    ...
T Consensus         6 ~~~~~ni~v~Gh~d~GKSTL~~~L~~~~~d~~~~E~~rg~Ti~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   85 (411)
T PRK04000          6 VQPEVNIGMVGHVDHGKTTLVQALTGVWTDRHSEELKRGITIRLGYADATIRKCPDCEEPEAYTTEPKCPNCGSETELLR   85 (411)
T ss_pred             CCCcEEEEEEccCCCCHHHHHHHhhCeecccCHhHHhcCcEEEecccccccccccccCcccccccccccccccccccccc
Confidence            35679999999999999999988854311110     00111100                 00000001  0    125


Q ss_pred             EEEEEeCCCccccccccccCcCCCcEEEEEEeCCCch-hHHHHHHHHHHHHhhhCCCCCEEEEeeCCcccCCcccccCCC
Q 036449           55 NLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKA-SYENVSKKWIPELKHYAPGVPIILVGTKLDLRDDKQFFIDHP  133 (197)
Q Consensus        55 ~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~-s~~~~~~~~~~~i~~~~~~~~~ivv~nK~D~~~~~~~~~~~~  133 (197)
                      .+.+||+||++.|..........+|++++|+|++++. ..+.. . .+..+... ...|+++|+||+|+.+...      
T Consensus        86 ~i~liDtPG~~~f~~~~~~~~~~~D~~llVVDa~~~~~~~~t~-~-~l~~l~~~-~i~~iiVVlNK~Dl~~~~~------  156 (411)
T PRK04000         86 RVSFVDAPGHETLMATMLSGAALMDGAILVIAANEPCPQPQTK-E-HLMALDII-GIKNIVIVQNKIDLVSKER------  156 (411)
T ss_pred             EEEEEECCCHHHHHHHHHHHHhhCCEEEEEEECCCCCCChhHH-H-HHHHHHHc-CCCcEEEEEEeeccccchh------
Confidence            7889999999988766555666789999999999653 22222 1 12222222 1236899999999965321      


Q ss_pred             CCCcccHHHHHHHHHHh--CCCceEEeccCCCCCHHHHHHHHHHHHcC
Q 036449          134 GAVPISTAQGEELRKLI--GAPAYIECSSKTQQNVKAVFDAAIRVVLQ  179 (197)
Q Consensus       134 ~~~~~~~~~~~~~~~~~--~~~~~~~~sa~~~~~i~~l~~~i~~~~~~  179 (197)
                        .....++...+.+.+  ...+++++||+++.|++++++.|.+.+..
T Consensus       157 --~~~~~~~i~~~l~~~~~~~~~ii~vSA~~g~gI~~L~~~L~~~l~~  202 (411)
T PRK04000        157 --ALENYEQIKEFVKGTVAENAPIIPVSALHKVNIDALIEAIEEEIPT  202 (411)
T ss_pred             --HHHHHHHHHHHhccccCCCCeEEEEECCCCcCHHHHHHHHHHhCCC
Confidence              001123334444332  12379999999999999999999987643

>COG0486 ThdF Predicted GTPase [General function prediction only]

Probab=99.80  E-value=9e-19  Score=133.56  Aligned_cols=152  Identities=26%  Similarity=0.298  Sum_probs=114.5

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHhhC--CCCCCCCCceeeeeeEEEEECCeEEEEEEEeCCCccccccc--------cccCc
Q 036449            6 FIKCVTVGDGAVGKTCLLISYTSN--TFPTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQEDYNRL--------RPLSY   75 (197)
Q Consensus         6 ~~~i~v~G~~~~GKstli~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~--------~~~~~   75 (197)
                      -++++++|.|++|||||+|++.+.  ....+.+.|+.+.....+.++|  +.+.+.||.|..+....        ....+
T Consensus       217 G~kvvIiG~PNvGKSSLLNaL~~~d~AIVTdI~GTTRDviee~i~i~G--~pv~l~DTAGiRet~d~VE~iGIeRs~~~i  294 (454)
T COG0486         217 GLKVVIIGRPNVGKSSLLNALLGRDRAIVTDIAGTTRDVIEEDINLNG--IPVRLVDTAGIRETDDVVERIGIERAKKAI  294 (454)
T ss_pred             CceEEEECCCCCcHHHHHHHHhcCCceEecCCCCCccceEEEEEEECC--EEEEEEecCCcccCccHHHHHHHHHHHHHH
Confidence            489999999999999999999975  4578889999999999999998  67779999996543311        12346


Q ss_pred             CCCcEEEEEEeCCCchhHHHHHHHHHHHHhhhCCCCCEEEEeeCCcccCCcccccCCCCCCcccHHHHHHHHHHhCCCce
Q 036449           76 RGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPISTAQGEELRKLIGAPAY  155 (197)
Q Consensus        76 ~~~~~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  155 (197)
                      .+||.+++|+|.+.+.+-.+.  ..+.   ....+.|+++|.||.|+.....               ........+. ++
T Consensus       295 ~~ADlvL~v~D~~~~~~~~d~--~~~~---~~~~~~~~i~v~NK~DL~~~~~---------------~~~~~~~~~~-~~  353 (454)
T COG0486         295 EEADLVLFVLDASQPLDKEDL--ALIE---LLPKKKPIIVVLNKADLVSKIE---------------LESEKLANGD-AI  353 (454)
T ss_pred             HhCCEEEEEEeCCCCCchhhH--HHHH---hcccCCCEEEEEechhcccccc---------------cchhhccCCC-ce
Confidence            789999999999987433333  2222   2224789999999999976432               1111112222 68


Q ss_pred             EEeccCCCCCHHHHHHHHHHHHcCC
Q 036449          156 IECSSKTQQNVKAVFDAAIRVVLQP  180 (197)
Q Consensus       156 ~~~sa~~~~~i~~l~~~i~~~~~~~  180 (197)
                      +.+|++++.|++.+.+.|.+.+...
T Consensus       354 i~iSa~t~~Gl~~L~~~i~~~~~~~  378 (454)
T COG0486         354 ISISAKTGEGLDALREAIKQLFGKG  378 (454)
T ss_pred             EEEEecCccCHHHHHHHHHHHHhhc
Confidence            9999999999999999999887765

>KOG1423 consensus Ras-like GTPase ERA [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms]

Probab=99.80  E-value=6.1e-19  Score=127.27  Aligned_cols=176  Identities=14%  Similarity=0.159  Sum_probs=110.0

Q ss_pred             CCceeEEEEEcCCCCCHHHHHHHHhhCCCCCCCCCceeeeeeEEEEECCeEEEEEEEeCCCcc------c------cccc
Q 036449            3 ASRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQE------D------YNRL   70 (197)
Q Consensus         3 ~~~~~~i~v~G~~~~GKstli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~------~------~~~~   70 (197)
                      +.+.++|+|+|.|++|||||.|.+++.+.......+...+....-.+.....++.|+||||.-      .      +...
T Consensus        69 ~~k~L~vavIG~PNvGKStLtN~mig~kv~~vS~K~~TTr~~ilgi~ts~eTQlvf~DTPGlvs~~~~r~~~l~~s~lq~  148 (379)
T KOG1423|consen   69 AQKSLYVAVIGAPNVGKSTLTNQMIGQKVSAVSRKVHTTRHRILGIITSGETQLVFYDTPGLVSKKMHRRHHLMMSVLQN  148 (379)
T ss_pred             cceEEEEEEEcCCCcchhhhhhHhhCCccccccccccceeeeeeEEEecCceEEEEecCCcccccchhhhHHHHHHhhhC
Confidence            367899999999999999999999998876544433333333322233344778899999921      1      1112


Q ss_pred             cccCcCCCcEEEEEEeCCCchhHHHHHHHHHHHHhhhCCCCCEEEEeeCCcccCCcccccC------CCCCCcccHHHHH
Q 036449           71 RPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLRDDKQFFID------HPGAVPISTAQGE  144 (197)
Q Consensus        71 ~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~~~ivv~nK~D~~~~~~~~~~------~~~~~~~~~~~~~  144 (197)
                      ....+.+||.+++++|+++....-.  -..+..+... .++|-++|.||.|..........      +........+..+
T Consensus       149 ~~~a~q~AD~vvVv~Das~tr~~l~--p~vl~~l~~y-s~ips~lvmnkid~~k~k~~Ll~l~~~Lt~g~l~~~kl~v~~  225 (379)
T KOG1423|consen  149 PRDAAQNADCVVVVVDASATRTPLH--PRVLHMLEEY-SKIPSILVMNKIDKLKQKRLLLNLKDLLTNGELAKLKLEVQE  225 (379)
T ss_pred             HHHHHhhCCEEEEEEeccCCcCccC--hHHHHHHHHH-hcCCceeeccchhcchhhhHHhhhHHhccccccchhhhhHHH
Confidence            2335668999999999997433222  1333333333 37899999999998765432211      0000000112222


Q ss_pred             HHHHHh------------CCCceEEeccCCCCCHHHHHHHHHHHHcCCC
Q 036449          145 ELRKLI------------GAPAYIECSSKTQQNVKAVFDAAIRVVLQPP  181 (197)
Q Consensus       145 ~~~~~~------------~~~~~~~~sa~~~~~i~~l~~~i~~~~~~~~  181 (197)
                      ++...-            ++..+|.+||++|+|++++-++|+.++...+
T Consensus       226 ~f~~~p~~~~~~~~~gwshfe~vF~vSaL~G~GikdlkqyLmsqa~~gp  274 (379)
T KOG1423|consen  226 KFTDVPSDEKWRTICGWSHFERVFMVSALYGEGIKDLKQYLMSQAPPGP  274 (379)
T ss_pred             HhccCCcccccccccCcccceeEEEEecccccCHHHHHHHHHhcCCCCC
Confidence            222211            1223789999999999999999999877654

>cd04168 TetM_like Tet(M)-like subfamily

Probab=99.79  E-value=2.3e-18  Score=124.70  Aligned_cols=113  Identities=22%  Similarity=0.159  Sum_probs=78.9

Q ss_pred             EEEEEcCCCCCHHHHHHHHhhCCCCCC------CCCceee-----------eeeEEEEECCeEEEEEEEeCCCccccccc
Q 036449            8 KCVTVGDGAVGKTCLLISYTSNTFPTD------YVPTVFD-----------NFSANVVVNGSTVNLGLWDTAGQEDYNRL   70 (197)
Q Consensus         8 ~i~v~G~~~~GKstli~~~~~~~~~~~------~~~~~~~-----------~~~~~~~~~~~~~~~~i~D~~G~~~~~~~   70 (197)
                      +|+++|+.|+|||||+++++...-...      ...+..+           .......+......+.+|||||+.+|...
T Consensus         1 ni~i~G~~~~GKTtL~~~ll~~~g~i~~~g~v~~~~~~~D~~~~e~~rg~ti~~~~~~~~~~~~~i~liDTPG~~~f~~~   80 (237)
T cd04168           1 NIGILAHVDAGKTTLTESLLYTSGAIRKLGSVDKGTTRTDTMELERQRGITIFSAVASFQWEDTKVNLIDTPGHMDFIAE   80 (237)
T ss_pred             CEEEEcCCCCCHHHHHHHHHHHcCCccccccccCCcccCCCchhHhhCCCceeeeeEEEEECCEEEEEEeCCCccchHHH
Confidence            589999999999999999986421100      0000000           00111222223467889999999999888


Q ss_pred             cccCcCCCcEEEEEEeCCCchhHHHHHHHHHHHHhhhCCCCCEEEEeeCCcccC
Q 036449           71 RPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLRD  124 (197)
Q Consensus        71 ~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~~~ivv~nK~D~~~  124 (197)
                      +..+++.+|++++|+|.++......  ..+...+...  +.|+++++||+|+..
T Consensus        81 ~~~~l~~aD~~IlVvd~~~g~~~~~--~~~~~~~~~~--~~P~iivvNK~D~~~  130 (237)
T cd04168          81 VERSLSVLDGAILVISAVEGVQAQT--RILWRLLRKL--NIPTIIFVNKIDRAG  130 (237)
T ss_pred             HHHHHHHhCeEEEEEeCCCCCCHHH--HHHHHHHHHc--CCCEEEEEECccccC
Confidence            8888999999999999998755432  3555555554  789999999999874

Tet(M), Tet(O), Tet(W), and OtrA are tetracycline resistance genes found in Gram-positive and Gram-negative bacteria. Tetracyclines inhibit protein synthesis by preventing aminoacyl-tRNA from binding to the ribosomal acceptor site. This subfamily contains tetracycline resistance proteins that function through ribosomal protection and are typically found on mobile genetic elements, such as transposons or plasmids, and are often conjugative. Ribosomal protection proteins are homologous to the elongation factors EF-Tu and EF-G. EF-G and Tet(M) compete for binding on the ribosomes. Tet(M) has a higher affinity than EF-G, suggesting these two proteins may have overlapping binding sites and that Tet(M) must be released before EF-G can bind. Tet(M) and Tet(O) have been shown to have ribosome-dependent GTPase activity. These proteins are part of the GTP translation factor family, which includes EF-G, EF-Tu, EF2, LepA, and SelB.

>PF04670 Gtr1_RagA: Gtr1/RagA G protein conserved region; InterPro: IPR006762 GTR1 was first identified in Saccharomyces cerevisiae (Baker's yeast) as a suppressor of a mutation in RCC1

Probab=99.79  E-value=4.7e-19  Score=126.60  Aligned_cols=166  Identities=19%  Similarity=0.291  Sum_probs=102.9

Q ss_pred             EEEEEcCCCCCHHHHHHHHhhCCCCCCCC---CceeeeeeEEEEECCeEEEEEEEeCCCcccccc-----ccccCcCCCc
Q 036449            8 KCVTVGDGAVGKTCLLISYTSNTFPTDYV---PTVFDNFSANVVVNGSTVNLGLWDTAGQEDYNR-----LRPLSYRGAD   79 (197)
Q Consensus         8 ~i~v~G~~~~GKstli~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~-----~~~~~~~~~~   79 (197)
                      ||+++|+.||||||+.+.++.+..+.+..   +|.... ...+.. ...+.+++||+||+..+..     .....++++.
T Consensus         1 KiLLmG~~~SGKTSi~~vIF~~~~p~dT~~L~~T~~ve-~~~v~~-~~~~~l~iwD~pGq~~~~~~~~~~~~~~if~~v~   78 (232)
T PF04670_consen    1 KILLMGPRRSGKTSIRSVIFHKYSPRDTLRLEPTIDVE-KSHVRF-LSFLPLNIWDCPGQDDFMENYFNSQREEIFSNVG   78 (232)
T ss_dssp             EEEEEESTTSSHHHHHHHHHS---GGGGGG-----SEE-EEEEEC-TTSCEEEEEEE-SSCSTTHTTHTCCHHHHHCTES
T ss_pred             CEEEEcCCCCChhhHHHHHHcCCCchhccccCCcCCce-EEEEec-CCCcEEEEEEcCCccccccccccccHHHHHhccC
Confidence            79999999999999999999876543321   222111 111111 2236789999999975533     3456789999


Q ss_pred             EEEEEEeCCCchhHHHHH--HHHHHHHhhhCCCCCEEEEeeCCcccCCcccccCCCCCCcccHHHHHHHHHHhC---CCc
Q 036449           80 VFILAFSLISKASYENVS--KKWIPELKHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPISTAQGEELRKLIG---APA  154 (197)
Q Consensus        80 ~~i~v~d~~~~~s~~~~~--~~~~~~i~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~  154 (197)
                      ++|||+|+.+.+-.+++.  ...+..+....|++.+-++.+|+|+..+....    .......+...+.+...+   . .
T Consensus        79 ~LIyV~D~qs~~~~~~l~~~~~~i~~l~~~sp~~~v~vfiHK~D~l~~~~r~----~~~~~~~~~i~~~~~~~~~~~~-~  153 (232)
T PF04670_consen   79 VLIYVFDAQSDDYDEDLAYLSDCIEALRQYSPNIKVFVFIHKMDLLSEDERE----EIFRDIQQRIRDELEDLGIEDI-T  153 (232)
T ss_dssp             EEEEEEETT-STCHHHHHHHHHHHHHHHHHSTT-EEEEEEE-CCCS-HHHHH----HHHHHHHHHHHHHHHHTT-TSE-E
T ss_pred             EEEEEEEcccccHHHHHHHHHHHHHHHHHhCCCCeEEEEEeecccCCHHHHH----HHHHHHHHHHHHHhhhccccce-E
Confidence            999999998554333331  34455666667999999999999997543200    000011233344444444   3 6


Q ss_pred             eEEeccCCCCCHHHHHHHHHHHHcCCC
Q 036449          155 YIECSSKTQQNVKAVFDAAIRVVLQPP  181 (197)
Q Consensus       155 ~~~~sa~~~~~i~~l~~~i~~~~~~~~  181 (197)
                      ++.||..+ +.+.+.|..+++.+..+.
T Consensus       154 ~~~TSI~D-~Sly~A~S~Ivq~LiP~~  179 (232)
T PF04670_consen  154 FFLTSIWD-ESLYEAWSKIVQKLIPNL  179 (232)
T ss_dssp             EEEE-TTS-THHHHHHHHHHHTTSTTH
T ss_pred             EEeccCcC-cHHHHHHHHHHHHHcccH
Confidence            88888887 689999999999887653

RCC1 catalyzes guanine nucleotide exchange on Ran, a well characterised nuclear Ras-like small G protein that plays an essential role in the import and export of proteins and RNAs across the nuclear membrane through the nuclear pore complex. RCC1 is located inside the nucleus, bound to chromatin. The concentration of GTP within the cell is ~30 times higher than the concentration of GDP, thus resulting in the preferential production of the GTP form of Ran by RCC1 within the nucleus. Gtr1p is located within both the cytoplasm and the nucleus and has been reported to play a role in cell growth. Biochemical analysis revealed that Gtr1 is in fact a G protein of the Ras family. The RagA/B proteins are the human homologues of Gtr1 and Rag A and Gtr1p belong to the sixth subfamily of the Ras-like small GTPase superfamily []. ; GO: 0005525 GTP binding, 0005634 nucleus, 0005737 cytoplasm; PDB: 3R7W_B 2Q3F_B 3LLU_A.

>PRK12736 elongation factor Tu; Reviewed

Probab=99.78  E-value=3.3e-18  Score=132.62  Aligned_cols=163  Identities=20%  Similarity=0.188  Sum_probs=106.0

Q ss_pred             CCceeEEEEEcCCCCCHHHHHHHHhhCCCCC-----------C------CCCceeeeeeEEEEECCeEEEEEEEeCCCcc
Q 036449            3 ASRFIKCVTVGDGAVGKTCLLISYTSNTFPT-----------D------YVPTVFDNFSANVVVNGSTVNLGLWDTAGQE   65 (197)
Q Consensus         3 ~~~~~~i~v~G~~~~GKstli~~~~~~~~~~-----------~------~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~   65 (197)
                      ..+.++|+++|+.++|||||+.+|++.....           +      ....+.+  .....+......+.+||+||++
T Consensus         9 ~k~~~ni~i~Ghvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rg~T~~--~~~~~~~~~~~~i~~iDtPGh~   86 (394)
T PRK12736          9 SKPHVNIGTIGHVDHGKTTLTAAITKVLAERGLNQAKDYDSIDAAPEEKERGITIN--TAHVEYETEKRHYAHVDCPGHA   86 (394)
T ss_pred             CCCeeEEEEEccCCCcHHHHHHHHHhhhhhhccccccchhhhcCCHHHHhcCccEE--EEeeEecCCCcEEEEEECCCHH
Confidence            3567999999999999999999997531100           0      0111111  1112233334567899999999


Q ss_pred             ccccccccCcCCCcEEEEEEeCCCchhHHHHHHHHHHHHhhhCCCCC-EEEEeeCCcccCCcccccCCCCCCcccHHHHH
Q 036449           66 DYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVP-IILVGTKLDLRDDKQFFIDHPGAVPISTAQGE  144 (197)
Q Consensus        66 ~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~~-~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~  144 (197)
                      +|.......+..+|++++|+|++++..-+.  ...+..+...  ++| +++++||+|+.+...       ......++..
T Consensus        87 ~f~~~~~~~~~~~d~~llVvd~~~g~~~~t--~~~~~~~~~~--g~~~~IvviNK~D~~~~~~-------~~~~i~~~i~  155 (394)
T PRK12736         87 DYVKNMITGAAQMDGAILVVAATDGPMPQT--REHILLARQV--GVPYLVVFLNKVDLVDDEE-------LLELVEMEVR  155 (394)
T ss_pred             HHHHHHHHHHhhCCEEEEEEECCCCCchhH--HHHHHHHHHc--CCCEEEEEEEecCCcchHH-------HHHHHHHHHH
Confidence            887766666778999999999987543332  2333444444  678 678899999864221       0011123455


Q ss_pred             HHHHHhCC----CceEEeccCCCC--------CHHHHHHHHHHHHc
Q 036449          145 ELRKLIGA----PAYIECSSKTQQ--------NVKAVFDAAIRVVL  178 (197)
Q Consensus       145 ~~~~~~~~----~~~~~~sa~~~~--------~i~~l~~~i~~~~~  178 (197)
                      .+....+.    .+++++||++|.        ++.++++.+.+.+.
T Consensus       156 ~~l~~~~~~~~~~~ii~vSa~~g~~~~~~~~~~i~~Ll~~l~~~lp  201 (394)
T PRK12736        156 ELLSEYDFPGDDIPVIRGSALKALEGDPKWEDAIMELMDAVDEYIP  201 (394)
T ss_pred             HHHHHhCCCcCCccEEEeeccccccCCCcchhhHHHHHHHHHHhCC
Confidence            55555553    379999999983        67888888887764

>COG0218 Predicted GTPase [General function prediction only]

Probab=99.78  E-value=7.9e-18  Score=115.53  Aligned_cols=160  Identities=17%  Similarity=0.138  Sum_probs=109.7

Q ss_pred             CCCceeEEEEEcCCCCCHHHHHHHHhhCCCCCCCCCceeeeeeE-EEEECCeEEEEEEEeCCC----------ccccccc
Q 036449            2 SASRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSA-NVVVNGSTVNLGLWDTAG----------QEDYNRL   70 (197)
Q Consensus         2 ~~~~~~~i~v~G~~~~GKstli~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~i~D~~G----------~~~~~~~   70 (197)
                      +++....|+++|.++||||||||++++.+--.....|.+.+... .+.+++.   +.++|.||          .+.+..+
T Consensus        20 P~~~~~EIaF~GRSNVGKSSlIN~l~~~k~LArtSktPGrTq~iNff~~~~~---~~lVDlPGYGyAkv~k~~~e~w~~~   96 (200)
T COG0218          20 PEDDLPEIAFAGRSNVGKSSLINALTNQKNLARTSKTPGRTQLINFFEVDDE---LRLVDLPGYGYAKVPKEVKEKWKKL   96 (200)
T ss_pred             CCCCCcEEEEEccCcccHHHHHHHHhCCcceeecCCCCCccceeEEEEecCc---EEEEeCCCcccccCCHHHHHHHHHH
Confidence            45566899999999999999999999976433334444444433 3334442   66999999          3445555


Q ss_pred             cccCcCC---CcEEEEEEeCCCchhHHHHHHHHHHHHhhhCCCCCEEEEeeCCcccCCcccccCCCCCCcccHHHHHHHH
Q 036449           71 RPLSYRG---ADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPISTAQGEELR  147 (197)
Q Consensus        71 ~~~~~~~---~~~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~  147 (197)
                      ...|++.   -.++++++|...+..-.+.  .+++.+...  ++|+++++||+|......          . .......+
T Consensus        97 i~~YL~~R~~L~~vvlliD~r~~~~~~D~--em~~~l~~~--~i~~~vv~tK~DKi~~~~----------~-~k~l~~v~  161 (200)
T COG0218          97 IEEYLEKRANLKGVVLLIDARHPPKDLDR--EMIEFLLEL--GIPVIVVLTKADKLKKSE----------R-NKQLNKVA  161 (200)
T ss_pred             HHHHHhhchhheEEEEEEECCCCCcHHHH--HHHHHHHHc--CCCeEEEEEccccCChhH----------H-HHHHHHHH
Confidence            5555554   3488899999877655443  777777777  899999999999976432          1 11112222


Q ss_pred             HHh----CCC-ceEEeccCCCCCHHHHHHHHHHHHcC
Q 036449          148 KLI----GAP-AYIECSSKTQQNVKAVFDAAIRVVLQ  179 (197)
Q Consensus       148 ~~~----~~~-~~~~~sa~~~~~i~~l~~~i~~~~~~  179 (197)
                      +..    ... .++..|+.++.|++++...|.+.+..
T Consensus       162 ~~l~~~~~~~~~~~~~ss~~k~Gi~~l~~~i~~~~~~  198 (200)
T COG0218         162 EELKKPPPDDQWVVLFSSLKKKGIDELKAKILEWLKE  198 (200)
T ss_pred             HHhcCCCCccceEEEEecccccCHHHHHHHHHHHhhc
Confidence            222    221 16779999999999999999887654

>PRK12735 elongation factor Tu; Reviewed

Probab=99.78  E-value=6.2e-18  Score=131.19  Aligned_cols=164  Identities=20%  Similarity=0.183  Sum_probs=105.4

Q ss_pred             CceeEEEEEcCCCCCHHHHHHHHhhCCCC-----------CCCCC---ceeeee-eEEEEECCeEEEEEEEeCCCccccc
Q 036449            4 SRFIKCVTVGDGAVGKTCLLISYTSNTFP-----------TDYVP---TVFDNF-SANVVVNGSTVNLGLWDTAGQEDYN   68 (197)
Q Consensus         4 ~~~~~i~v~G~~~~GKstli~~~~~~~~~-----------~~~~~---~~~~~~-~~~~~~~~~~~~~~i~D~~G~~~~~   68 (197)
                      .+.++|+++|+.++|||||+++++.....           ....+   ..+... .....+.....++.++||||+++|.
T Consensus        10 ~~~~~i~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rGiT~~~~~~~~~~~~~~i~~iDtPGh~~f~   89 (396)
T PRK12735         10 KPHVNVGTIGHVDHGKTTLTAAITKVLAKKGGGEAKAYDQIDNAPEEKARGITINTSHVEYETANRHYAHVDCPGHADYV   89 (396)
T ss_pred             CCeEEEEEECcCCCCHHHHHHHHHHhhhhcCCcccchhhhccCChhHHhcCceEEEeeeEEcCCCcEEEEEECCCHHHHH
Confidence            56799999999999999999999862100           00000   001111 1112222334567899999998887


Q ss_pred             cccccCcCCCcEEEEEEeCCCchhHHHHHHHHHHHHhhhCCCCCEE-EEeeCCcccCCcccccCCCCCCcccHHHHHHHH
Q 036449           69 RLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPII-LVGTKLDLRDDKQFFIDHPGAVPISTAQGEELR  147 (197)
Q Consensus        69 ~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~~~i-vv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~  147 (197)
                      ......+..+|++++|+|+.+....+.  ..++..+...  ++|.+ +++||+|+.+...       .......+...+.
T Consensus        90 ~~~~~~~~~aD~~llVvda~~g~~~qt--~e~l~~~~~~--gi~~iivvvNK~Dl~~~~~-------~~~~~~~ei~~~l  158 (396)
T PRK12735         90 KNMITGAAQMDGAILVVSAADGPMPQT--REHILLARQV--GVPYIVVFLNKCDMVDDEE-------LLELVEMEVRELL  158 (396)
T ss_pred             HHHHhhhccCCEEEEEEECCCCCchhH--HHHHHHHHHc--CCCeEEEEEEecCCcchHH-------HHHHHHHHHHHHH
Confidence            666677889999999999987543332  2334444433  67865 5799999964221       1112223556666


Q ss_pred             HHhCC----CceEEeccCCCC----------CHHHHHHHHHHHHc
Q 036449          148 KLIGA----PAYIECSSKTQQ----------NVKAVFDAAIRVVL  178 (197)
Q Consensus       148 ~~~~~----~~~~~~sa~~~~----------~i~~l~~~i~~~~~  178 (197)
                      ..++.    .+++++||.++.          ++.++++.|.+.+.
T Consensus       159 ~~~~~~~~~~~ii~~Sa~~g~n~~~~~~w~~~~~~Ll~~l~~~~~  203 (396)
T PRK12735        159 SKYDFPGDDTPIIRGSALKALEGDDDEEWEAKILELMDAVDSYIP  203 (396)
T ss_pred             HHcCCCcCceeEEecchhccccCCCCCcccccHHHHHHHHHhcCC
Confidence            66643    378999999984          67888888887654

>COG0532 InfB Translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]

Probab=99.77  E-value=2.1e-17  Score=127.83  Aligned_cols=164  Identities=18%  Similarity=0.212  Sum_probs=115.1

Q ss_pred             CceeEEEEEcCCCCCHHHHHHHHhhCCCCCCCCCceeeeeeEE-EEEC-CeEEEEEEEeCCCccccccccccCcCCCcEE
Q 036449            4 SRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSAN-VVVN-GSTVNLGLWDTAGQEDYNRLRPLSYRGADVF   81 (197)
Q Consensus         4 ~~~~~i~v~G~~~~GKstli~~~~~~~~~~~~~~~~~~~~~~~-~~~~-~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~   81 (197)
                      .+..=|.++|+...|||||+..+...........-........ +..+ +....+.|.|||||+.|..++..-..-+|++
T Consensus         3 ~R~PvVtimGHVDHGKTtLLD~IR~t~Va~~EaGGITQhIGA~~v~~~~~~~~~itFiDTPGHeAFt~mRaRGa~vtDIa   82 (509)
T COG0532           3 LRPPVVTIMGHVDHGKTTLLDKIRKTNVAAGEAGGITQHIGAYQVPLDVIKIPGITFIDTPGHEAFTAMRARGASVTDIA   82 (509)
T ss_pred             CCCCEEEEeCcccCCccchhhhHhcCccccccCCceeeEeeeEEEEeccCCCceEEEEcCCcHHHHHHHHhcCCccccEE
Confidence            4567799999999999999999998888766666665555433 3332 1234678999999999999999999999999


Q ss_pred             EEEEeCCCchhHHHHHHHHHHHHhhhCCCCCEEEEeeCCcccCCcccccCCCCCCcccHH--HHHHHHHHh-CCCceEEe
Q 036449           82 ILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPISTA--QGEELRKLI-GAPAYIEC  158 (197)
Q Consensus        82 i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~-~~~~~~~~  158 (197)
                      |+|++++|.--.+..  .-+...+.  .+.|+++++||+|..+.+..        .+..+  +.--....+ +...++++
T Consensus        83 ILVVa~dDGv~pQTi--EAI~hak~--a~vP~iVAiNKiDk~~~np~--------~v~~el~~~gl~~E~~gg~v~~Vpv  150 (509)
T COG0532          83 ILVVAADDGVMPQTI--EAINHAKA--AGVPIVVAINKIDKPEANPD--------KVKQELQEYGLVPEEWGGDVIFVPV  150 (509)
T ss_pred             EEEEEccCCcchhHH--HHHHHHHH--CCCCEEEEEecccCCCCCHH--------HHHHHHHHcCCCHhhcCCceEEEEe
Confidence            999999987444433  11223333  38999999999999854320        01010  000111222 22368999


Q ss_pred             ccCCCCCHHHHHHHHHHHHcC
Q 036449          159 SSKTQQNVKAVFDAAIRVVLQ  179 (197)
Q Consensus       159 sa~~~~~i~~l~~~i~~~~~~  179 (197)
                      ||++|.|+++|+..+.-...-
T Consensus       151 SA~tg~Gi~eLL~~ill~aev  171 (509)
T COG0532         151 SAKTGEGIDELLELILLLAEV  171 (509)
T ss_pred             eccCCCCHHHHHHHHHHHHHH
Confidence            999999999999998765443

>cd01883 EF1_alpha Eukaryotic elongation factor 1 (EF1) alpha subfamily

Probab=99.77  E-value=2.7e-18  Score=123.31  Aligned_cols=151  Identities=15%  Similarity=0.027  Sum_probs=89.7

Q ss_pred             EEEEEcCCCCCHHHHHHHHhhCCC--CC--------------C----------------CCCceeeeeeEEEEECCeEEE
Q 036449            8 KCVTVGDGAVGKTCLLISYTSNTF--PT--------------D----------------YVPTVFDNFSANVVVNGSTVN   55 (197)
Q Consensus         8 ~i~v~G~~~~GKstli~~~~~~~~--~~--------------~----------------~~~~~~~~~~~~~~~~~~~~~   55 (197)
                      +|+++|+.++|||||+.+++....  ..              .                ...++.+.....+...  ...
T Consensus         1 nv~i~Gh~~~GKttL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~E~~rg~T~d~~~~~~~~~--~~~   78 (219)
T cd01883           1 NLVVIGHVDAGKSTTTGHLLYLLGGVDKRTIEKYEKEAKEMGKGSFKYAWVLDTLKEERERGVTIDVGLAKFETE--KYR   78 (219)
T ss_pred             CEEEecCCCCChHHHHHHHHHHhcCcCHHHHHHHHHHHHhcCCcchhHHhhhcCCHHHhhCccCeecceEEEeeC--CeE
Confidence            589999999999999988863211  00              0                0001111111122233  467


Q ss_pred             EEEEeCCCccccccccccCcCCCcEEEEEEeCCCch-------hHHHHHHHHHHHHhhhCCCCCEEEEeeCCcccCCccc
Q 036449           56 LGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKA-------SYENVSKKWIPELKHYAPGVPIILVGTKLDLRDDKQF  128 (197)
Q Consensus        56 ~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~-------s~~~~~~~~~~~i~~~~~~~~~ivv~nK~D~~~~~~~  128 (197)
                      +.+||+||+..|.......+..+|++|+|+|++++.       ..+.. .. ..... .....|+++++||+|+......
T Consensus        79 i~liDtpG~~~~~~~~~~~~~~~d~~i~VvDa~~~~~~~~~~~~~~~~-~~-~~~~~-~~~~~~iiivvNK~Dl~~~~~~  155 (219)
T cd01883          79 FTILDAPGHRDFVPNMITGASQADVAVLVVDARKGEFEAGFEKGGQTR-EH-ALLAR-TLGVKQLIVAVNKMDDVTVNWS  155 (219)
T ss_pred             EEEEECCChHHHHHHHHHHhhhCCEEEEEEECCCCccccccccccchH-HH-HHHHH-HcCCCeEEEEEEcccccccccc
Confidence            889999999887766666778899999999999852       11111 11 22222 2223689999999999732100


Q ss_pred             ccCCCCCCcccHHHHHHHHHHhCC----CceEEeccCCCCCHH
Q 036449          129 FIDHPGAVPISTAQGEELRKLIGA----PAYIECSSKTQQNVK  167 (197)
Q Consensus       129 ~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~sa~~~~~i~  167 (197)
                          ........++...+....+.    .+++++||++|.|++
T Consensus       156 ----~~~~~~i~~~l~~~l~~~~~~~~~~~ii~iSA~tg~gi~  194 (219)
T cd01883         156 ----EERYDEIKKELSPFLKKVGYNPKDVPFIPISGLTGDNLI  194 (219)
T ss_pred             ----HHHHHHHHHHHHHHHHHcCCCcCCceEEEeecCcCCCCC
Confidence                00000111223333444443    369999999999987

EF1 is responsible for the GTP-dependent binding of aminoacyl-tRNAs to the ribosomes. EF1 is composed of four subunits: the alpha chain which binds GTP and aminoacyl-tRNAs, the gamma chain that probably plays a role in anchoring the complex to other cellular components and the beta and delta (or beta') chains. This subfamily is the alpha subunit, and represents the counterpart of bacterial EF-Tu for the archaea (aEF1-alpha) and eukaryotes (eEF1-alpha). eEF1-alpha interacts with the actin of the eukaryotic cytoskeleton and may thereby play a role in cellular transformation and apoptosis. EF-Tu can have no such role in bacteria. In humans, the isoform eEF1A2 is overexpressed in 2/3 of breast cancers and has been identified as a putative oncogene. This subfamily also includes Hbs1, a G protein known to be important for efficient growth and protein synthesis under conditions of limiting translation initiation in

>COG0370 FeoB Fe2+ transport system protein B [Inorganic ion transport and metabolism]

Probab=99.77  E-value=1.3e-17  Score=132.31  Aligned_cols=157  Identities=17%  Similarity=0.222  Sum_probs=121.3

Q ss_pred             ceeEEEEEcCCCCCHHHHHHHHhhCCC-CCCCCCceeeeeeEEEEECCeEEEEEEEeCCCccccccc------cccC-c-
Q 036449            5 RFIKCVTVGDGAVGKTCLLISYTSNTF-PTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQEDYNRL------RPLS-Y-   75 (197)
Q Consensus         5 ~~~~i~v~G~~~~GKstli~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~------~~~~-~-   75 (197)
                      +..+|+++|+|++|||||+|++.+... ..+++..+.+.........+.+  +++.|.||...+...      ...+ + 
T Consensus         2 ~~~~valvGNPNvGKTtlFN~LTG~~q~VgNwpGvTVEkkeg~~~~~~~~--i~ivDLPG~YSL~~~S~DE~Var~~ll~   79 (653)
T COG0370           2 KKLTVALVGNPNVGKTTLFNALTGANQKVGNWPGVTVEKKEGKLKYKGHE--IEIVDLPGTYSLTAYSEDEKVARDFLLE   79 (653)
T ss_pred             CcceEEEecCCCccHHHHHHHHhccCceecCCCCeeEEEEEEEEEecCce--EEEEeCCCcCCCCCCCchHHHHHHHHhc
Confidence            346799999999999999999997654 5788888888888888888755  669999995443311      1122 2 


Q ss_pred             CCCcEEEEEEeCCCchhHHHHHHHHHHHHhhhCCCCCEEEEeeCCcccCCcccccCCCCCCcccHHHHHHHHHHhCCCce
Q 036449           76 RGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPISTAQGEELRKLIGAPAY  155 (197)
Q Consensus        76 ~~~~~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  155 (197)
                      ..+|++|-|+|++|-+..-.+.-    ++.+.  +.|++++.|++|..+...           ...+..++.+..|+ |.
T Consensus        80 ~~~D~ivnVvDAtnLeRnLyltl----QLlE~--g~p~ilaLNm~D~A~~~G-----------i~ID~~~L~~~LGv-PV  141 (653)
T COG0370          80 GKPDLIVNVVDATNLERNLYLTL----QLLEL--GIPMILALNMIDEAKKRG-----------IRIDIEKLSKLLGV-PV  141 (653)
T ss_pred             CCCCEEEEEcccchHHHHHHHHH----HHHHc--CCCeEEEeccHhhHHhcC-----------CcccHHHHHHHhCC-CE
Confidence            45799999999998866554422    23333  789999999999987654           23445688899999 99


Q ss_pred             EEeccCCCCCHHHHHHHHHHHHcCCC
Q 036449          156 IECSSKTQQNVKAVFDAAIRVVLQPP  181 (197)
Q Consensus       156 ~~~sa~~~~~i~~l~~~i~~~~~~~~  181 (197)
                      ++++|++|.|++++...+.+......
T Consensus       142 v~tvA~~g~G~~~l~~~i~~~~~~~~  167 (653)
T COG0370         142 VPTVAKRGEGLEELKRAIIELAESKT  167 (653)
T ss_pred             EEEEeecCCCHHHHHHHHHHhccccc
Confidence            99999999999999999988766654

>TIGR00485 EF-Tu translation elongation factor TU

Probab=99.77  E-value=7.9e-18  Score=130.67  Aligned_cols=149  Identities=20%  Similarity=0.166  Sum_probs=95.4

Q ss_pred             CCceeEEEEEcCCCCCHHHHHHHHhhCCC-----------C-C-----CCCCceeeeeeEEEEECCeEEEEEEEeCCCcc
Q 036449            3 ASRFIKCVTVGDGAVGKTCLLISYTSNTF-----------P-T-----DYVPTVFDNFSANVVVNGSTVNLGLWDTAGQE   65 (197)
Q Consensus         3 ~~~~~~i~v~G~~~~GKstli~~~~~~~~-----------~-~-----~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~   65 (197)
                      ..+.++|+++|+.++|||||+++|+....           . .     .....+.+  .....+......+.+|||||++
T Consensus         9 ~~~~~~i~i~Ghvd~GKStL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rG~Ti~--~~~~~~~~~~~~~~liDtpGh~   86 (394)
T TIGR00485         9 TKPHVNIGTIGHVDHGKTTLTAAITTVLAKEGGAAARAYDQIDNAPEEKARGITIN--TAHVEYETENRHYAHVDCPGHA   86 (394)
T ss_pred             CCceEEEEEEeecCCCHHHHHHHHHhhHHHhhcccccccccccCCHHHHhcCccee--eEEEEEcCCCEEEEEEECCchH
Confidence            35779999999999999999999974210           0 0     00111111  1122333344678899999999


Q ss_pred             ccccccccCcCCCcEEEEEEeCCCchhHHHHHHHHHHHHhhhCCCCCEE-EEeeCCcccCCcccccCCCCCCcccHHHHH
Q 036449           66 DYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPII-LVGTKLDLRDDKQFFIDHPGAVPISTAQGE  144 (197)
Q Consensus        66 ~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~~~i-vv~nK~D~~~~~~~~~~~~~~~~~~~~~~~  144 (197)
                      +|.......+..+|++++|+|++++...+..  ..+..+...  ++|.+ +++||+|+.+...       ......++..
T Consensus        87 ~f~~~~~~~~~~~D~~ilVvda~~g~~~qt~--e~l~~~~~~--gi~~iIvvvNK~Dl~~~~~-------~~~~~~~~i~  155 (394)
T TIGR00485        87 DYVKNMITGAAQMDGAILVVSATDGPMPQTR--EHILLARQV--GVPYIVVFLNKCDMVDDEE-------LLELVEMEVR  155 (394)
T ss_pred             HHHHHHHHHHhhCCEEEEEEECCCCCcHHHH--HHHHHHHHc--CCCEEEEEEEecccCCHHH-------HHHHHHHHHH
Confidence            8876665567788999999999875433322  333444444  67765 6899999965321       0001123566


Q ss_pred             HHHHHhCC----CceEEeccCCCC
Q 036449          145 ELRKLIGA----PAYIECSSKTQQ  164 (197)
Q Consensus       145 ~~~~~~~~----~~~~~~sa~~~~  164 (197)
                      .+.+.++.    .+++++||.++.
T Consensus       156 ~~l~~~~~~~~~~~ii~vSa~~g~  179 (394)
T TIGR00485       156 ELLSEYDFPGDDTPIIRGSALKAL  179 (394)
T ss_pred             HHHHhcCCCccCccEEECcccccc
Confidence            66666653    489999999874

This alignment models orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts, one of several GTP-binding translation factors found by the more general pfam model GTP_EFTU. The eukaryotic conterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this model. EF-Tu is one of the most abundant proteins in bacteria, as well as one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.

>CHL00071 tufA elongation factor Tu

Probab=99.75  E-value=1.9e-17  Score=129.03  Aligned_cols=150  Identities=21%  Similarity=0.158  Sum_probs=96.7

Q ss_pred             CCceeEEEEEcCCCCCHHHHHHHHhhCCCCC--C---------------CCCceeeeeeEEEEECCeEEEEEEEeCCCcc
Q 036449            3 ASRFIKCVTVGDGAVGKTCLLISYTSNTFPT--D---------------YVPTVFDNFSANVVVNGSTVNLGLWDTAGQE   65 (197)
Q Consensus         3 ~~~~~~i~v~G~~~~GKstli~~~~~~~~~~--~---------------~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~   65 (197)
                      +.+.++|+++|++++|||||+++++......  .               ....+.+.  ....+.....++.+.||||+.
T Consensus         9 ~~~~~~i~i~Gh~d~GKSTL~~~Ll~~~~~~~~~~~~~~~~~d~~~~e~~rg~T~~~--~~~~~~~~~~~~~~iDtPGh~   86 (409)
T CHL00071          9 KKPHVNIGTIGHVDHGKTTLTAAITMTLAAKGGAKAKKYDEIDSAPEEKARGITINT--AHVEYETENRHYAHVDCPGHA   86 (409)
T ss_pred             CCCeEEEEEECCCCCCHHHHHHHHHHHhCccccccccccccccCChhhhcCCEeEEc--cEEEEccCCeEEEEEECCChH
Confidence            3577999999999999999999998642110  0               00011010  111222233567799999998


Q ss_pred             ccccccccCcCCCcEEEEEEeCCCchhHHHHHHHHHHHHhhhCCCCC-EEEEeeCCcccCCcccccCCCCCCcccHHHHH
Q 036449           66 DYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVP-IILVGTKLDLRDDKQFFIDHPGAVPISTAQGE  144 (197)
Q Consensus        66 ~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~~-~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~  144 (197)
                      +|.......+..+|++++|+|+..+..-+.  ...+..+...  +.| +++++||+|+.+...       ......++..
T Consensus        87 ~~~~~~~~~~~~~D~~ilVvda~~g~~~qt--~~~~~~~~~~--g~~~iIvvvNK~D~~~~~~-------~~~~~~~~l~  155 (409)
T CHL00071         87 DYVKNMITGAAQMDGAILVVSAADGPMPQT--KEHILLAKQV--GVPNIVVFLNKEDQVDDEE-------LLELVELEVR  155 (409)
T ss_pred             HHHHHHHHHHHhCCEEEEEEECCCCCcHHH--HHHHHHHHHc--CCCEEEEEEEccCCCCHHH-------HHHHHHHHHH
Confidence            887766667788999999999987643332  2334444444  678 778999999965321       0011223455


Q ss_pred             HHHHHhCC----CceEEeccCCCCC
Q 036449          145 ELRKLIGA----PAYIECSSKTQQN  165 (197)
Q Consensus       145 ~~~~~~~~----~~~~~~sa~~~~~  165 (197)
                      .+.+..+.    .+++++||.+|.+
T Consensus       156 ~~l~~~~~~~~~~~ii~~Sa~~g~n  180 (409)
T CHL00071        156 ELLSKYDFPGDDIPIVSGSALLALE  180 (409)
T ss_pred             HHHHHhCCCCCcceEEEcchhhccc
Confidence            55555543    4799999998863

>cd04104 p47_IIGP_like p47 (47-kDa) family

Probab=99.75  E-value=2.3e-17  Score=116.65  Aligned_cols=168  Identities=14%  Similarity=0.157  Sum_probs=98.2

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHhhCCCCCCCCCceee-eeeEE-EEEC-CeEEEEEEEeCCCcccccc-----ccccCcCC
Q 036449            6 FIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFD-NFSAN-VVVN-GSTVNLGLWDTAGQEDYNR-----LRPLSYRG   77 (197)
Q Consensus         6 ~~~i~v~G~~~~GKstli~~~~~~~~~~~~~~~~~~-~~~~~-~~~~-~~~~~~~i~D~~G~~~~~~-----~~~~~~~~   77 (197)
                      .++|+++|.+|+|||||++.+.+.........+.+. ..... ..+. .....+.+||+||......     +....+..
T Consensus         1 ~~kI~i~G~~g~GKSSLin~L~g~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~l~l~DtpG~~~~~~~~~~~l~~~~~~~   80 (197)
T cd04104           1 PLNIAVTGESGAGKSSFINALRGVGHEEEGAAPTGVVETTMKRTPYPHPKFPNVTLWDLPGIGSTAFPPDDYLEEMKFSE   80 (197)
T ss_pred             CeEEEEECCCCCCHHHHHHHHhccCCCCCCccccCccccccCceeeecCCCCCceEEeCCCCCcccCCHHHHHHHhCccC
Confidence            378999999999999999999986543322222211 00000 0111 1123578999999753221     22233667


Q ss_pred             CcEEEEEEeCCCchhHHHHHHHHHHHHhhhCCCCCEEEEeeCCcccCCcccccCCCCC--CcccHHH----HHHHHHH--
Q 036449           78 ADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLRDDKQFFIDHPGA--VPISTAQ----GEELRKL--  149 (197)
Q Consensus        78 ~~~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~--~~~~~~~----~~~~~~~--  149 (197)
                      +|+++++.+.    ++......|+..+...  +.|+++|+||+|+....... ..+..  .....++    .......  
T Consensus        81 ~d~~l~v~~~----~~~~~d~~~~~~l~~~--~~~~ilV~nK~D~~~~~~~~-~~~~~~~~~~~l~~i~~~~~~~~~~~~  153 (197)
T cd04104          81 YDFFIIISST----RFSSNDVKLAKAIQCM--GKKFYFVRTKVDRDLSNEQR-SKPRSFNREQVLQEIRDNCLENLQEAG  153 (197)
T ss_pred             cCEEEEEeCC----CCCHHHHHHHHHHHHh--CCCEEEEEecccchhhhhhc-cccccccHHHHHHHHHHHHHHHHHHcC
Confidence            8998888442    2333335667777766  68999999999995422100 00000  0011111    1111222  


Q ss_pred             hCCCceEEeccC--CCCCHHHHHHHHHHHHcCC
Q 036449          150 IGAPAYIECSSK--TQQNVKAVFDAAIRVVLQP  180 (197)
Q Consensus       150 ~~~~~~~~~sa~--~~~~i~~l~~~i~~~~~~~  180 (197)
                      ...++++.+|+.  .+.++..+.+.++..+-+.
T Consensus       154 ~~~p~v~~vS~~~~~~~~~~~l~~~~~~~l~~~  186 (197)
T cd04104         154 VSEPPVFLVSNFDPSDYDFPKLRETLLKDLPAH  186 (197)
T ss_pred             CCCCCEEEEeCCChhhcChHHHHHHHHHHhhHH
Confidence            123478899998  5789999999999887654

The p47 GTPase family consists of several highly homologous proteins, including IGTP, TGTP/Mg21, IRG-47, GTPI, LRG-47, and IIGP1. They are found in higher eukaryotes where they play a role in immune resistance against intracellular pathogens. p47 proteins exist at low resting levels in mouse cells, but are strongly induced by Type II interferon (IFN-gamma). ITGP is critical for resistance to Toxoplasma gondii infection and in involved in inhibition of Coxsackievirus-B3-induced apoptosis. TGTP was shown to limit vesicular stomatitis virus (VSV) infection of fibroblasts in vitro. IRG-47 is involved in resistance to T. gondii infection. LRG-47 has been implicated in resistance to T. gondii, Listeria monocytogenes, Leishmania, and mycobacterial infections. IIGP1 has been shown to localize to the ER and to the Golgi membranes in IFN-induced cells and inflamed tissues. In macrophages, IIGP1 interacts with hook3, a microtubule binding protei

>cd04169 RF3 RF3 subfamily

Probab=99.74  E-value=6.1e-17  Score=119.15  Aligned_cols=114  Identities=18%  Similarity=0.165  Sum_probs=76.5

Q ss_pred             EEEEEcCCCCCHHHHHHHHhhCCCCCCCC---------C-ceee-----------eeeEEEEECCeEEEEEEEeCCCccc
Q 036449            8 KCVTVGDGAVGKTCLLISYTSNTFPTDYV---------P-TVFD-----------NFSANVVVNGSTVNLGLWDTAGQED   66 (197)
Q Consensus         8 ~i~v~G~~~~GKstli~~~~~~~~~~~~~---------~-~~~~-----------~~~~~~~~~~~~~~~~i~D~~G~~~   66 (197)
                      +|+++|++|+|||||+++++...-.-...         . +..+           .......+....+.+++|||||+.+
T Consensus         4 ni~ivGh~~~GKTTL~e~ll~~~g~i~~~g~v~~~~~~~~t~~D~~~~e~~rg~si~~~~~~~~~~~~~i~liDTPG~~d   83 (267)
T cd04169           4 TFAIISHPDAGKTTLTEKLLLFGGAIREAGAVKARKSRKHATSDWMEIEKQRGISVTSSVMQFEYRDCVINLLDTPGHED   83 (267)
T ss_pred             EEEEEcCCCCCHHHHHHHHHHhcCCcccCceecccccCCCccCCCcHHHHhCCCCeEEEEEEEeeCCEEEEEEECCCchH
Confidence            69999999999999999998532110000         0 0000           0111122333457888999999998


Q ss_pred             cccccccCcCCCcEEEEEEeCCCchhHHHHHHHHHHHHhhhCCCCCEEEEeeCCcccCC
Q 036449           67 YNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLRDD  125 (197)
Q Consensus        67 ~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~~~ivv~nK~D~~~~  125 (197)
                      |.......+..+|++|+|+|++++.....  ..++......  ++|+++++||+|+...
T Consensus        84 f~~~~~~~l~~aD~~IlVvda~~g~~~~~--~~i~~~~~~~--~~P~iivvNK~D~~~a  138 (267)
T cd04169          84 FSEDTYRTLTAVDSAVMVIDAAKGVEPQT--RKLFEVCRLR--GIPIITFINKLDREGR  138 (267)
T ss_pred             HHHHHHHHHHHCCEEEEEEECCCCccHHH--HHHHHHHHhc--CCCEEEEEECCccCCC
Confidence            87766667889999999999987643322  2344444333  7899999999998653

Peptide chain release factor 3 (RF3) is a protein involved in the termination step of translation in bacteria. Termination occurs when class I release factors (RF1 or RF2) recognize the stop codon at the A-site of the ribosome and activate the release of the nascent polypeptide. The class II release factor RF3 then initiates the release of the class I RF from the ribosome. RF3 binds to the RF/ribosome complex in the inactive (GDP-bound) state. GDP/GTP exchange occurs, followed by the release of the class I RF. Subsequent hydrolysis of GTP to GDP triggers the release of RF3 from the ribosome. RF3 also enhances the efficiency of class I RFs at less preferred stop codons and at stop codons in weak contexts.

>KOG1489 consensus Predicted GTP-binding protein (ODN superfamily) [General function prediction only]

Probab=99.72  E-value=1.6e-16  Score=115.41  Aligned_cols=154  Identities=18%  Similarity=0.237  Sum_probs=107.5

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhhCCC-CCCCCCcee-eeeeEEEEECCeEEEEEEEeCCCccccc-------cccccCcCC
Q 036449            7 IKCVTVGDGAVGKTCLLISYTSNTF-PTDYVPTVF-DNFSANVVVNGSTVNLGLWDTAGQEDYN-------RLRPLSYRG   77 (197)
Q Consensus         7 ~~i~v~G~~~~GKstli~~~~~~~~-~~~~~~~~~-~~~~~~~~~~~~~~~~~i~D~~G~~~~~-------~~~~~~~~~   77 (197)
                      -.|-+||-|++|||||++++..-+. ...|..|+. .... ++.+++. .++.+-|+||.-+=.       ......++.
T Consensus       197 advGLVG~PNAGKSTLL~als~AKpkVa~YaFTTL~P~iG-~v~yddf-~q~tVADiPGiI~GAh~nkGlG~~FLrHiER  274 (366)
T KOG1489|consen  197 ADVGLVGFPNAGKSTLLNALSRAKPKVAHYAFTTLRPHIG-TVNYDDF-SQITVADIPGIIEGAHMNKGLGYKFLRHIER  274 (366)
T ss_pred             cccceecCCCCcHHHHHHHhhccCCcccccceeeeccccc-eeecccc-ceeEeccCccccccccccCcccHHHHHHHHh
Confidence            3578999999999999999997543 456666663 2323 3333332 338899999942211       111223557


Q ss_pred             CcEEEEEEeCCCc---hhHHHHHHHHHHHHhhhC---CCCCEEEEeeCCcccCCcccccCCCCCCcccHHHHHHHHHHhC
Q 036449           78 ADVFILAFSLISK---ASYENVSKKWIPELKHYA---PGVPIILVGTKLDLRDDKQFFIDHPGAVPISTAQGEELRKLIG  151 (197)
Q Consensus        78 ~~~~i~v~d~~~~---~s~~~~~~~~~~~i~~~~---~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  151 (197)
                      +...+||+|++.+   ..++.+ +.+..++..+.   .+.|.++|+||+|+.+..             .....++++...
T Consensus       275 ~~~l~fVvD~s~~~~~~p~~~~-~lL~~ELe~yek~L~~rp~liVaNKiD~~eae-------------~~~l~~L~~~lq  340 (366)
T KOG1489|consen  275 CKGLLFVVDLSGKQLRNPWQQL-QLLIEELELYEKGLADRPALIVANKIDLPEAE-------------KNLLSSLAKRLQ  340 (366)
T ss_pred             hceEEEEEECCCcccCCHHHHH-HHHHHHHHHHhhhhccCceEEEEeccCchhHH-------------HHHHHHHHHHcC
Confidence            8999999999988   666666 45544444433   688999999999995422             122456777777


Q ss_pred             CCceEEeccCCCCCHHHHHHHHHHH
Q 036449          152 APAYIECSSKTQQNVKAVFDAAIRV  176 (197)
Q Consensus       152 ~~~~~~~sa~~~~~i~~l~~~i~~~  176 (197)
                      .+.++++||++++++.++++.|-+.
T Consensus       341 ~~~V~pvsA~~~egl~~ll~~lr~~  365 (366)
T KOG1489|consen  341 NPHVVPVSAKSGEGLEELLNGLREL  365 (366)
T ss_pred             CCcEEEeeeccccchHHHHHHHhhc
Confidence            6459999999999999999987653

>PRK00049 elongation factor Tu; Reviewed

Probab=99.72  E-value=2.3e-16  Score=122.39  Aligned_cols=162  Identities=20%  Similarity=0.176  Sum_probs=103.6

Q ss_pred             CceeEEEEEcCCCCCHHHHHHHHhhCCCC---C---C-----------CCCceeeeeeEEEEECCeEEEEEEEeCCCccc
Q 036449            4 SRFIKCVTVGDGAVGKTCLLISYTSNTFP---T---D-----------YVPTVFDNFSANVVVNGSTVNLGLWDTAGQED   66 (197)
Q Consensus         4 ~~~~~i~v~G~~~~GKstli~~~~~~~~~---~---~-----------~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~   66 (197)
                      .+.++|+++|+.++|||||+++|+.....   .   .           ....+.+  .....+.....++.+.||||+.+
T Consensus        10 ~~~~ni~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rg~Ti~--~~~~~~~~~~~~i~~iDtPG~~~   87 (396)
T PRK00049         10 KPHVNVGTIGHVDHGKTTLTAAITKVLAKKGGAEAKAYDQIDKAPEEKARGITIN--TAHVEYETEKRHYAHVDCPGHAD   87 (396)
T ss_pred             CCEEEEEEEeECCCCHHHHHHHHHHhhhhccCCcccchhhccCChHHHhcCeEEe--eeEEEEcCCCeEEEEEECCCHHH
Confidence            56799999999999999999999863110   0   0           0111111  11222322345677999999988


Q ss_pred             cccccccCcCCCcEEEEEEeCCCchhHHHHHHHHHHHHhhhCCCCCEE-EEeeCCcccCCcccccCCCCCCcccHHHHHH
Q 036449           67 YNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPII-LVGTKLDLRDDKQFFIDHPGAVPISTAQGEE  145 (197)
Q Consensus        67 ~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~~~i-vv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~  145 (197)
                      |.......+..+|++++|+|+.++..-+.  ..++..+...  +.|.+ +++||+|+.+...       .......+...
T Consensus        88 f~~~~~~~~~~aD~~llVVDa~~g~~~qt--~~~~~~~~~~--g~p~iiVvvNK~D~~~~~~-------~~~~~~~~i~~  156 (396)
T PRK00049         88 YVKNMITGAAQMDGAILVVSAADGPMPQT--REHILLARQV--GVPYIVVFLNKCDMVDDEE-------LLELVEMEVRE  156 (396)
T ss_pred             HHHHHHhhhccCCEEEEEEECCCCCchHH--HHHHHHHHHc--CCCEEEEEEeecCCcchHH-------HHHHHHHHHHH
Confidence            87766677889999999999987643332  2444445444  68876 5899999964221       00011223444


Q ss_pred             HHHHhCC----CceEEeccCCCC----------CHHHHHHHHHHHHc
Q 036449          146 LRKLIGA----PAYIECSSKTQQ----------NVKAVFDAAIRVVL  178 (197)
Q Consensus       146 ~~~~~~~----~~~~~~sa~~~~----------~i~~l~~~i~~~~~  178 (197)
                      +....+.    .+++++||.++.          ++..+++.|.+.+.
T Consensus       157 ~l~~~~~~~~~~~iv~iSa~~g~~~~~~~~w~~~~~~ll~~l~~~~~  203 (396)
T PRK00049        157 LLSKYDFPGDDTPIIRGSALKALEGDDDEEWEKKILELMDAVDSYIP  203 (396)
T ss_pred             HHHhcCCCccCCcEEEeecccccCCCCcccccccHHHHHHHHHhcCC
Confidence            4444432    479999999875          56778888777543

>cd01886 EF-G Elongation factor G (EF-G) subfamily

Probab=99.72  E-value=9.3e-17  Score=118.29  Aligned_cols=111  Identities=16%  Similarity=0.150  Sum_probs=76.5

Q ss_pred             EEEEEcCCCCCHHHHHHHHhhCCCCCC-------------CC------CceeeeeeEEEEECCeEEEEEEEeCCCccccc
Q 036449            8 KCVTVGDGAVGKTCLLISYTSNTFPTD-------------YV------PTVFDNFSANVVVNGSTVNLGLWDTAGQEDYN   68 (197)
Q Consensus         8 ~i~v~G~~~~GKstli~~~~~~~~~~~-------------~~------~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~   68 (197)
                      +|+++|++|+|||||+++++...-...             +.      ..+.......+.+.+  .++.+|||||+..|.
T Consensus         1 nv~ivGh~~~GKTtL~~~Ll~~~g~~~~~g~v~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~--~~i~liDTPG~~df~   78 (270)
T cd01886           1 NIGIIAHIDAGKTTTTERILYYTGRIHKIGEVHGGGATMDFMEQERERGITIQSAATTCFWKD--HRINIIDTPGHVDFT   78 (270)
T ss_pred             CEEEEcCCCCCHHHHHHHHHHHcCCCcccccccCCccccCCCccccCCCcCeeccEEEEEECC--EEEEEEECCCcHHHH
Confidence            589999999999999999974221100             00      000011112223333  677899999998888


Q ss_pred             cccccCcCCCcEEEEEEeCCCchhHHHHHHHHHHHHhhhCCCCCEEEEeeCCcccC
Q 036449           69 RLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLRD  124 (197)
Q Consensus        69 ~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~~~ivv~nK~D~~~  124 (197)
                      ..+...++.+|++|+|+|.++...-..  ..++..+...  +.|+++++||+|+.+
T Consensus        79 ~~~~~~l~~aD~ailVVDa~~g~~~~t--~~~~~~~~~~--~~p~ivviNK~D~~~  130 (270)
T cd01886          79 IEVERSLRVLDGAVAVFDAVAGVEPQT--ETVWRQADRY--NVPRIAFVNKMDRTG  130 (270)
T ss_pred             HHHHHHHHHcCEEEEEEECCCCCCHHH--HHHHHHHHHc--CCCEEEEEECCCCCC
Confidence            888888999999999999988654332  2344444444  789999999999865

Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group conta

>cd01885 EF2 EF2 (for archaea and eukarya)

Probab=99.72  E-value=1.8e-16  Score=113.34  Aligned_cols=112  Identities=15%  Similarity=0.125  Sum_probs=78.0

Q ss_pred             EEEEEcCCCCCHHHHHHHHhhCCC--CCCCCCce------------eeee---eEEEEEC--------CeEEEEEEEeCC
Q 036449            8 KCVTVGDGAVGKTCLLISYTSNTF--PTDYVPTV------------FDNF---SANVVVN--------GSTVNLGLWDTA   62 (197)
Q Consensus         8 ~i~v~G~~~~GKstli~~~~~~~~--~~~~~~~~------------~~~~---~~~~~~~--------~~~~~~~i~D~~   62 (197)
                      +|+++|+.++|||||+.+|+...-  ........            +...   .....+.        +..+.+++||||
T Consensus         2 NvaiiGhvd~GKTTL~d~Ll~~~g~i~~~~~g~~~~~D~~~~E~~RgiTi~~~~~~~~~~~~~~~~~~~~~~~i~iiDTP   81 (222)
T cd01885           2 NICIIAHVDHGKTTLSDSLLASAGIISEKLAGKARYMDSREDEQERGITMKSSAISLYFEYEEEDKADGNEYLINLIDSP   81 (222)
T ss_pred             eEEEECCCCCCHHHHHHHHHHHcCCCccccCCceeeccCCHHHHHhccccccceEEEEEecCcccccCCCceEEEEECCC
Confidence            689999999999999999875431  11100000            0000   0011222        346889999999


Q ss_pred             CccccccccccCcCCCcEEEEEEeCCCchhHHHHHHHHHHHHhhhCCCCCEEEEeeCCccc
Q 036449           63 GQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLR  123 (197)
Q Consensus        63 G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~~~ivv~nK~D~~  123 (197)
                      |+..|......++..+|++++|+|++++...+..  ..+......  +.|+++++||+|+.
T Consensus        82 G~~~f~~~~~~~l~~aD~~ilVvD~~~g~~~~t~--~~l~~~~~~--~~p~ilviNKiD~~  138 (222)
T cd01885          82 GHVDFSSEVTAALRLCDGALVVVDAVEGVCVQTE--TVLRQALKE--RVKPVLVINKIDRL  138 (222)
T ss_pred             CccccHHHHHHHHHhcCeeEEEEECCCCCCHHHH--HHHHHHHHc--CCCEEEEEECCCcc
Confidence            9999998888899999999999999988766543  223333322  68999999999985

Translocation requires hydrolysis of a molecule of GTP and is mediated by EF-G in bacteria and by eEF2 in eukaryotes. The eukaryotic elongation factor eEF2 is a GTPase involved in the translocation of the peptidyl-tRNA from the A site to the P site on the ribosome. The 95-kDa protein is highly conserved, with 60% amino acid sequence identity between the human and yeast proteins. Two major mechanisms are known to regulate protein elongation and both involve eEF2. First, eEF2 can be modulated by reversible phosphorylation. Increased levels of phosphorylated eEF2 reduce elongation rates presumably because phosphorylated eEF2 fails to bind the ribosomes. Treatment of mammalian cells with agents that raise the cytoplasmic Ca2+ and cAMP levels reduce elongation rates by activating the kinase responsible for phosphorylating eEF2. In contrast, treatment of cells with insulin increases elongation rates by promoting eEF2 dephosphorylation. Seco

>PRK05124 cysN sulfate adenylyltransferase subunit 1; Provisional

Probab=99.71  E-value=1.2e-16  Score=126.31  Aligned_cols=158  Identities=16%  Similarity=0.082  Sum_probs=93.7

Q ss_pred             CCceeEEEEEcCCCCCHHHHHHHHhhCCC--CCCC----------CCce-------------------eeee-eEEEEEC
Q 036449            3 ASRFIKCVTVGDGAVGKTCLLISYTSNTF--PTDY----------VPTV-------------------FDNF-SANVVVN   50 (197)
Q Consensus         3 ~~~~~~i~v~G~~~~GKstli~~~~~~~~--~~~~----------~~~~-------------------~~~~-~~~~~~~   50 (197)
                      ....++|+++|+.++|||||+.+++...-  ....          ..+.                   +... .....+.
T Consensus        24 ~~~~~~i~iiGhvdaGKSTL~~~LL~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~a~~~D~~~eEr~rgiTid~~~~~~~  103 (474)
T PRK05124         24 HKSLLRFLTCGSVDDGKSTLIGRLLHDTKQIYEDQLASLHNDSKRHGTQGEKLDLALLVDGLQAEREQGITIDVAYRYFS  103 (474)
T ss_pred             ccCceEEEEECCCCCChHHHHHHHHHhcCCCcHHHHHHHHHHHHhcCCCccccchhhhccCChHHhhcCCCeEeeEEEec
Confidence            35679999999999999999998874321  1100          0000                   0000 0111122


Q ss_pred             CeEEEEEEEeCCCccccccccccCcCCCcEEEEEEeCCCchhHHHHHHHHHHHHhhhCCCCCEEEEeeCCcccCCccccc
Q 036449           51 GSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLRDDKQFFI  130 (197)
Q Consensus        51 ~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~~~ivv~nK~D~~~~~~~~~  130 (197)
                      ....++.+|||||++.|.......+..+|++++|+|++.+..-+.. .. ...+... ...++++++||+|+...+.   
T Consensus       104 ~~~~~i~~iDTPGh~~f~~~~~~~l~~aD~allVVDa~~G~~~qt~-~~-~~l~~~l-g~~~iIvvvNKiD~~~~~~---  177 (474)
T PRK05124        104 TEKRKFIIADTPGHEQYTRNMATGASTCDLAILLIDARKGVLDQTR-RH-SFIATLL-GIKHLVVAVNKMDLVDYSE---  177 (474)
T ss_pred             cCCcEEEEEECCCcHHHHHHHHHHHhhCCEEEEEEECCCCccccch-HH-HHHHHHh-CCCceEEEEEeeccccchh---
Confidence            2345788999999988876555557899999999999876432221 11 1112222 1247899999999964221   


Q ss_pred             CCCCCCcccHHHHHHHHHHhC---CCceEEeccCCCCCHHHH
Q 036449          131 DHPGAVPISTAQGEELRKLIG---APAYIECSSKTQQNVKAV  169 (197)
Q Consensus       131 ~~~~~~~~~~~~~~~~~~~~~---~~~~~~~sa~~~~~i~~l  169 (197)
                         ........+...+....+   ..+++++||++|.|++++
T Consensus       178 ---~~~~~i~~~l~~~~~~~~~~~~~~iipvSA~~g~ni~~~  216 (474)
T PRK05124        178 ---EVFERIREDYLTFAEQLPGNLDIRFVPLSALEGDNVVSQ  216 (474)
T ss_pred             ---HHHHHHHHHHHHHHHhcCCCCCceEEEEEeecCCCcccc
Confidence               000011122233333333   237999999999999764

>PLN00043 elongation factor 1-alpha; Provisional

Probab=99.71  E-value=2.1e-16  Score=123.91  Aligned_cols=159  Identities=14%  Similarity=0.058  Sum_probs=99.4

Q ss_pred             CCceeEEEEEcCCCCCHHHHHHHHhhCCC--CC------------------------CCCCce---eeee-eEEEEECCe
Q 036449            3 ASRFIKCVTVGDGAVGKTCLLISYTSNTF--PT------------------------DYVPTV---FDNF-SANVVVNGS   52 (197)
Q Consensus         3 ~~~~~~i~v~G~~~~GKstli~~~~~~~~--~~------------------------~~~~~~---~~~~-~~~~~~~~~   52 (197)
                      ..+.++|+++|+.++|||||+.+++...-  ..                        +..+..   +... .....+...
T Consensus         4 ~k~~~ni~i~Ghvd~GKSTL~g~Ll~~~g~i~~~~~~~~~~~~~~~~~~~~~~a~~~D~~~~Er~rGiTi~~~~~~~~~~   83 (447)
T PLN00043          4 EKVHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETT   83 (447)
T ss_pred             CCceEEEEEEecCCCCHHHHHHHHHHHhCCCcHHHHHHHhhhhhhhcccchhhhhhhcCCHhHHhcCceEEEEEEEecCC
Confidence            35679999999999999999988874211  10                        000000   0000 011122334


Q ss_pred             EEEEEEEeCCCccccccccccCcCCCcEEEEEEeCCCchh---H---HHHHHHHHHHHhhhCCCCC-EEEEeeCCcccCC
Q 036449           53 TVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKAS---Y---ENVSKKWIPELKHYAPGVP-IILVGTKLDLRDD  125 (197)
Q Consensus        53 ~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s---~---~~~~~~~~~~i~~~~~~~~-~ivv~nK~D~~~~  125 (197)
                      ...+.++|+|||++|.......+..+|++|+|+|+++..-   +   ... ..........  ++| +++++||+|+...
T Consensus        84 ~~~i~liDtPGh~df~~~~~~g~~~aD~aIlVVda~~G~~e~g~~~~~qT-~eh~~~~~~~--gi~~iIV~vNKmD~~~~  160 (447)
T PLN00043         84 KYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQT-REHALLAFTL--GVKQMICCCNKMDATTP  160 (447)
T ss_pred             CEEEEEEECCCHHHHHHHHHhhhhhccEEEEEEEcccCceecccCCCchH-HHHHHHHHHc--CCCcEEEEEEcccCCch
Confidence            5678899999999999888888999999999999987410   1   122 2222223233  564 7889999998621


Q ss_pred             cccccCCCCCCcccHHHHHHHHHHhCC----CceEEeccCCCCCHHH
Q 036449          126 KQFFIDHPGAVPISTAQGEELRKLIGA----PAYIECSSKTQQNVKA  168 (197)
Q Consensus       126 ~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~sa~~~~~i~~  168 (197)
                      ...    ........++.+.+.+..+.    .+|+++||.+|+|+.+
T Consensus       161 ~~~----~~~~~~i~~ei~~~l~~~g~~~~~~~~ipiSa~~G~ni~~  203 (447)
T PLN00043        161 KYS----KARYDEIVKEVSSYLKKVGYNPDKIPFVPISGFEGDNMIE  203 (447)
T ss_pred             hhh----HHHHHHHHHHHHHHHHHcCCCcccceEEEEeccccccccc
Confidence            100    00011224556677776663    3799999999999853

>PLN03126 Elongation factor Tu; Provisional

Probab=99.71  E-value=1.9e-16  Score=124.75  Aligned_cols=150  Identities=23%  Similarity=0.192  Sum_probs=95.0

Q ss_pred             CceeEEEEEcCCCCCHHHHHHHHhhCCC------CCCC-----CCce---eeee-eEEEEECCeEEEEEEEeCCCccccc
Q 036449            4 SRFIKCVTVGDGAVGKTCLLISYTSNTF------PTDY-----VPTV---FDNF-SANVVVNGSTVNLGLWDTAGQEDYN   68 (197)
Q Consensus         4 ~~~~~i~v~G~~~~GKstli~~~~~~~~------~~~~-----~~~~---~~~~-~~~~~~~~~~~~~~i~D~~G~~~~~   68 (197)
                      .+.++|+++|+.++|||||+++|+....      ...+     .+..   +... .....+......+.++|+||++.|.
T Consensus        79 k~~~ni~iiGhvd~GKSTLi~~Ll~~~~~i~~~~~~~~~~~D~~~~Er~rGiTi~~~~~~~~~~~~~i~liDtPGh~~f~  158 (478)
T PLN03126         79 KPHVNIGTIGHVDHGKTTLTAALTMALASMGGSAPKKYDEIDAAPEERARGITINTATVEYETENRHYAHVDCPGHADYV  158 (478)
T ss_pred             CCeeEEEEECCCCCCHHHHHHHHHHhhhhhccccccccccccCChhHHhCCeeEEEEEEEEecCCcEEEEEECCCHHHHH
Confidence            5679999999999999999999985211      1100     0000   1010 1111122233567899999999987


Q ss_pred             cccccCcCCCcEEEEEEeCCCchhHHHHHHHHHHHHhhhCCCCC-EEEEeeCCcccCCcccccCCCCCCcccHHHHHHHH
Q 036449           69 RLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVP-IILVGTKLDLRDDKQFFIDHPGAVPISTAQGEELR  147 (197)
Q Consensus        69 ~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~~-~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~  147 (197)
                      ......+..+|++++|+|+.+....+.  ..++..+...  ++| +++++||+|+.+...       ......++...+.
T Consensus       159 ~~~~~g~~~aD~ailVVda~~G~~~qt--~e~~~~~~~~--gi~~iIvvvNK~Dl~~~~~-------~~~~i~~~i~~~l  227 (478)
T PLN03126        159 KNMITGAAQMDGAILVVSGADGPMPQT--KEHILLAKQV--GVPNMVVFLNKQDQVDDEE-------LLELVELEVRELL  227 (478)
T ss_pred             HHHHHHHhhCCEEEEEEECCCCCcHHH--HHHHHHHHHc--CCCeEEEEEecccccCHHH-------HHHHHHHHHHHHH
Confidence            776667788999999999987754433  2344444444  678 778999999965321       0111223445555


Q ss_pred             HHhC----CCceEEeccCCCC
Q 036449          148 KLIG----APAYIECSSKTQQ  164 (197)
Q Consensus       148 ~~~~----~~~~~~~sa~~~~  164 (197)
                      ...+    ..+++++|+.++.
T Consensus       228 ~~~g~~~~~~~~vp~Sa~~g~  248 (478)
T PLN03126        228 SSYEFPGDDIPIISGSALLAL  248 (478)
T ss_pred             HhcCCCcCcceEEEEEccccc
Confidence            5542    2379999998874

>TIGR02034 CysN sulfate adenylyltransferase, large subunit

Probab=99.71  E-value=9.3e-17  Score=124.97  Aligned_cols=153  Identities=18%  Similarity=0.107  Sum_probs=91.9

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhhCCC--CCCC----------CCce-------------------eeee-eEEEEECCeEE
Q 036449            7 IKCVTVGDGAVGKTCLLISYTSNTF--PTDY----------VPTV-------------------FDNF-SANVVVNGSTV   54 (197)
Q Consensus         7 ~~i~v~G~~~~GKstli~~~~~~~~--~~~~----------~~~~-------------------~~~~-~~~~~~~~~~~   54 (197)
                      +||+++|+.++|||||+.+++...-  ....          ..+.                   +... .....+.....
T Consensus         1 ~~~~~vGhvd~GKSTL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~~~D~~~eE~~rgiTid~~~~~~~~~~~   80 (406)
T TIGR02034         1 LRFLTCGSVDDGKSTLIGRLLHDTKQIYEDQLAALERDSKKHGTQGGEIDLALLVDGLQAEREQGITIDVAYRYFSTDKR   80 (406)
T ss_pred             CeEEEECCCCCCchhhhHHHHHHcCCcCHHHHHHHHHHHHhhCCCcCceeeeeeccCChHHhcCCcCeEeeeEEEccCCe
Confidence            5899999999999999998874321  1100          0000                   0000 01111222335


Q ss_pred             EEEEEeCCCccccccccccCcCCCcEEEEEEeCCCchhHHHHHHHHHHHHhhhCCCCCEEEEeeCCcccCCcccccCCCC
Q 036449           55 NLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLRDDKQFFIDHPG  134 (197)
Q Consensus        55 ~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~  134 (197)
                      .+.+|||||++.|.......+..+|++++|+|+..+..-+..  .....+... ...++++++||+|+.....      .
T Consensus        81 ~~~liDtPGh~~f~~~~~~~~~~aD~allVVda~~G~~~qt~--~~~~~~~~~-~~~~iivviNK~D~~~~~~------~  151 (406)
T TIGR02034        81 KFIVADTPGHEQYTRNMATGASTADLAVLLVDARKGVLEQTR--RHSYIASLL-GIRHVVLAVNKMDLVDYDE------E  151 (406)
T ss_pred             EEEEEeCCCHHHHHHHHHHHHhhCCEEEEEEECCCCCccccH--HHHHHHHHc-CCCcEEEEEEecccccchH------H
Confidence            788999999998876666678899999999999876433322  111222222 1246889999999964321      0


Q ss_pred             CCcccHHHHHHHHHHhCC--CceEEeccCCCCCHHH
Q 036449          135 AVPISTAQGEELRKLIGA--PAYIECSSKTQQNVKA  168 (197)
Q Consensus       135 ~~~~~~~~~~~~~~~~~~--~~~~~~sa~~~~~i~~  168 (197)
                      ......++...+.+..+.  .+++++||++|.|+++
T Consensus       152 ~~~~i~~~~~~~~~~~~~~~~~iipiSA~~g~ni~~  187 (406)
T TIGR02034       152 VFENIKKDYLAFAEQLGFRDVTFIPLSALKGDNVVS  187 (406)
T ss_pred             HHHHHHHHHHHHHHHcCCCCccEEEeecccCCCCcc
Confidence            000112233344444443  2699999999999885

Homologous to this E.coli activation pathway are nodPQH gene products found among members of the Rhizobiaceae family. These gene products have been shown to exhibit ATP sulfurase and APS kinase activity, yet are involved in Nod factor sulfation, and sulfation of other macromolecules. With members of the Rhizobiaceae family, nodQ often appears as a fusion of cysN (large subunit of ATP sulfurase) and cysC (APS kinase).

>COG1084 Predicted GTPase [General function prediction only]

Probab=99.71  E-value=4.9e-16  Score=113.65  Aligned_cols=160  Identities=22%  Similarity=0.233  Sum_probs=113.0

Q ss_pred             ceeEEEEEcCCCCCHHHHHHHHhhCCC-CCCCCCceeeeeeEEEEECCeEEEEEEEeCCCcccc-----c---cccccCc
Q 036449            5 RFIKCVTVGDGAVGKTCLLISYTSNTF-PTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQEDY-----N---RLRPLSY   75 (197)
Q Consensus         5 ~~~~i~v~G~~~~GKstli~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~-----~---~~~~~~~   75 (197)
                      ....|+|.|.|+||||||++.+..-+. ...|+.|+......++..++  .++|++||||.-+-     .   ......+
T Consensus       167 ~~pTivVaG~PNVGKSSlv~~lT~AkpEvA~YPFTTK~i~vGhfe~~~--~R~QvIDTPGlLDRPl~ErN~IE~qAi~AL  244 (346)
T COG1084         167 DLPTIVVAGYPNVGKSSLVRKLTTAKPEVAPYPFTTKGIHVGHFERGY--LRIQVIDTPGLLDRPLEERNEIERQAILAL  244 (346)
T ss_pred             CCCeEEEecCCCCcHHHHHHHHhcCCCccCCCCccccceeEeeeecCC--ceEEEecCCcccCCChHHhcHHHHHHHHHH
Confidence            446799999999999999999998665 46788888766666666655  56789999993211     1   1111112


Q ss_pred             C-CCcEEEEEEeCCC--chhHHHHHHHHHHHHhhhCCCCCEEEEeeCCcccCCcccccCCCCCCcccHHHHHHHHHHhCC
Q 036449           76 R-GADVFILAFSLIS--KASYENVSKKWIPELKHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPISTAQGEELRKLIGA  152 (197)
Q Consensus        76 ~-~~~~~i~v~d~~~--~~s~~~~~~~~~~~i~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  152 (197)
                      + -.++++|++|.+.  .-+.+.- ..++..+...+. .|+++|.||+|......            .+++......-+.
T Consensus       245 ~hl~~~IlF~~D~Se~cgy~lE~Q-~~L~~eIk~~f~-~p~v~V~nK~D~~~~e~------------~~~~~~~~~~~~~  310 (346)
T COG1084         245 RHLAGVILFLFDPSETCGYSLEEQ-ISLLEEIKELFK-APIVVVINKIDIADEEK------------LEEIEASVLEEGG  310 (346)
T ss_pred             HHhcCeEEEEEcCccccCCCHHHH-HHHHHHHHHhcC-CCeEEEEecccccchhH------------HHHHHHHHHhhcc
Confidence            2 3678999999964  4455554 577788887775 89999999999975432            2333333444454


Q ss_pred             CceEEeccCCCCCHHHHHHHHHHHHcCC
Q 036449          153 PAYIECSSKTQQNVKAVFDAAIRVVLQP  180 (197)
Q Consensus       153 ~~~~~~sa~~~~~i~~l~~~i~~~~~~~  180 (197)
                      .....+++..+.+++.+-..+...+.+.
T Consensus       311 ~~~~~~~~~~~~~~d~~~~~v~~~a~~~  338 (346)
T COG1084         311 EEPLKISATKGCGLDKLREEVRKTALEP  338 (346)
T ss_pred             ccccceeeeehhhHHHHHHHHHHHhhch
Confidence            4577899999999999988888775543

>PLN03127 Elongation factor Tu; Provisional

Probab=99.71  E-value=5.2e-16  Score=121.66  Aligned_cols=162  Identities=20%  Similarity=0.189  Sum_probs=100.0

Q ss_pred             CceeEEEEEcCCCCCHHHHHHHHhhC------CCCC----------C-CCCceeeeeeEEEEECCeEEEEEEEeCCCccc
Q 036449            4 SRFIKCVTVGDGAVGKTCLLISYTSN------TFPT----------D-YVPTVFDNFSANVVVNGSTVNLGLWDTAGQED   66 (197)
Q Consensus         4 ~~~~~i~v~G~~~~GKstli~~~~~~------~~~~----------~-~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~   66 (197)
                      .+.++|+++|+.++|||||+++|.+.      ....          + ....+.+  .....+.....++.++||||+..
T Consensus        59 k~~~ni~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~D~~~~E~~rGiTi~--~~~~~~~~~~~~i~~iDtPGh~~  136 (447)
T PLN03127         59 KPHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAVAFDEIDKAPEEKARGITIA--TAHVEYETAKRHYAHVDCPGHAD  136 (447)
T ss_pred             CceEEEEEECcCCCCHHHHHHHHHhHHHHhhcccceeeccccCChhHhhcCceee--eeEEEEcCCCeEEEEEECCCccc
Confidence            56799999999999999999998622      1000          0 0111111  11222333345778999999988


Q ss_pred             cccccccCcCCCcEEEEEEeCCCchhHHHHHHHHHHHHhhhCCCCC-EEEEeeCCcccCCcccccCCCCCCcccHHHHHH
Q 036449           67 YNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVP-IILVGTKLDLRDDKQFFIDHPGAVPISTAQGEE  145 (197)
Q Consensus        67 ~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~~-~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~  145 (197)
                      |.......+..+|++++|+|++++..-+.  ...+..+...  ++| +++++||+|+.+...       .......+..+
T Consensus       137 f~~~~~~g~~~aD~allVVda~~g~~~qt--~e~l~~~~~~--gip~iIvviNKiDlv~~~~-------~~~~i~~~i~~  205 (447)
T PLN03127        137 YVKNMITGAAQMDGGILVVSAPDGPMPQT--KEHILLARQV--GVPSLVVFLNKVDVVDDEE-------LLELVEMELRE  205 (447)
T ss_pred             hHHHHHHHHhhCCEEEEEEECCCCCchhH--HHHHHHHHHc--CCCeEEEEEEeeccCCHHH-------HHHHHHHHHHH
Confidence            87655556677999999999987643332  2334444444  688 578899999964221       00011123334


Q ss_pred             HHHHhCC----CceEEeccC---CCCC-------HHHHHHHHHHHHc
Q 036449          146 LRKLIGA----PAYIECSSK---TQQN-------VKAVFDAAIRVVL  178 (197)
Q Consensus       146 ~~~~~~~----~~~~~~sa~---~~~~-------i~~l~~~i~~~~~  178 (197)
                      +....+.    .+++++|+.   ++.|       +.++++.|.+.+.
T Consensus       206 ~l~~~~~~~~~vpiip~Sa~sa~~g~n~~~~~~~i~~Ll~~l~~~lp  252 (447)
T PLN03127        206 LLSFYKFPGDEIPIIRGSALSALQGTNDEIGKNAILKLMDAVDEYIP  252 (447)
T ss_pred             HHHHhCCCCCcceEEEeccceeecCCCcccccchHHHHHHHHHHhCC
Confidence            4443322    378888875   4544       7788888877654

>PF09439 SRPRB: Signal recognition particle receptor beta subunit; InterPro: IPR019009 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]

Probab=99.70  E-value=7.9e-18  Score=115.48  Aligned_cols=118  Identities=19%  Similarity=0.169  Sum_probs=74.6

Q ss_pred             ceeEEEEEcCCCCCHHHHHHHHhhCCCCCCCCCceeeeeeEEEEE-CCeEEEEEEEeCCCcccccccccc---CcCCCcE
Q 036449            5 RFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVV-NGSTVNLGLWDTAGQEDYNRLRPL---SYRGADV   80 (197)
Q Consensus         5 ~~~~i~v~G~~~~GKstli~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~i~D~~G~~~~~~~~~~---~~~~~~~   80 (197)
                      +.-.|+++|+.|+|||+|+..|..+.......+. .....  ..+ ......+.++|+|||++.+.....   ++..+.+
T Consensus         2 k~~~vlL~Gps~SGKTaLf~~L~~~~~~~T~tS~-e~n~~--~~~~~~~~~~~~lvD~PGH~rlr~~~~~~~~~~~~~k~   78 (181)
T PF09439_consen    2 KRPTVLLVGPSGSGKTALFSQLVNGKTVPTVTSM-ENNIA--YNVNNSKGKKLRLVDIPGHPRLRSKLLDELKYLSNAKG   78 (181)
T ss_dssp             ---EEEEE-STTSSHHHHHHHHHHSS---B---S-SEEEE--CCGSSTCGTCECEEEETT-HCCCHHHHHHHHHHGGEEE
T ss_pred             CCceEEEEcCCCCCHHHHHHHHhcCCcCCeeccc-cCCce--EEeecCCCCEEEEEECCCcHHHHHHHHHhhhchhhCCE
Confidence            3457999999999999999999998655443333 11111  111 122235779999999988764333   4778999


Q ss_pred             EEEEEeCCC-chhHHHHHHHHHHHHhhhC---CCCCEEEEeeCCcccCC
Q 036449           81 FILAFSLIS-KASYENVSKKWIPELKHYA---PGVPIILVGTKLDLRDD  125 (197)
Q Consensus        81 ~i~v~d~~~-~~s~~~~~~~~~~~i~~~~---~~~~~ivv~nK~D~~~~  125 (197)
                      +|||+|.+. .....++...++..+....   ...|++|++||.|+...
T Consensus        79 IIfvvDSs~~~~~~~~~Ae~Ly~iL~~~~~~~~~~piLIacNK~Dl~~A  127 (181)
T PF09439_consen   79 IIFVVDSSTDQKELRDVAEYLYDILSDTEVQKNKPPILIACNKQDLFTA  127 (181)
T ss_dssp             EEEEEETTTHHHHHHHHHHHHHHHHHHHHCCTT--EEEEEEE-TTSTT-
T ss_pred             EEEEEeCccchhhHHHHHHHHHHHHHhhhhccCCCCEEEEEeCcccccc
Confidence            999999974 4556666566666666543   57999999999999653

SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. The SR receptor is a monomer consisting of the loosely membrane-associated SR-alpha homologue FtsY, while the eukaryotic SR receptor is a heterodimer of SR-alpha (70 kDa) and SR-beta (25 kDa), both of which contain a GTP-binding domain []. SR-alpha regulates the targeting of SRP-ribosome-nascent polypeptide complexes to the translocon []. SR-alpha binds to the SRP54 subunit of the SRP complex. The SR-beta subunit is a transmembrane GTPase that anchors the SR-alpha subunit (a peripheral membrane GTPase) to the ER membrane []. SR-beta interacts with the N-terminal SRX-domain of SR-alpha, which is not present in the bacterial FtsY homologue. SR-beta also functions in recruiting the SRP-nascent polypeptide to the protein-conducting channel. The beta subunit of the signal recognition particle receptor (SRP) is a transmembrane GTPase, which anchors the alpha subunit to the endoplasmic reticulum membrane []. ; PDB: 2GED_B 1NRJ_B 2GO5_2 2FH5_B.

>cd01850 CDC_Septin CDC/Septin

Probab=99.70  E-value=1e-15  Score=113.19  Aligned_cols=144  Identities=16%  Similarity=0.113  Sum_probs=91.1

Q ss_pred             ceeEEEEEcCCCCCHHHHHHHHhhCCCCCC----------CCCcee-eeeeEEEEECCeEEEEEEEeCCCcccc------
Q 036449            5 RFIKCVTVGDGAVGKTCLLISYTSNTFPTD----------YVPTVF-DNFSANVVVNGSTVNLGLWDTAGQEDY------   67 (197)
Q Consensus         5 ~~~~i~v~G~~~~GKstli~~~~~~~~~~~----------~~~~~~-~~~~~~~~~~~~~~~~~i~D~~G~~~~------   67 (197)
                      -.++|+++|.+|+|||||++++++..+...          ..+|.. ......+..++..+.+.+|||||....      
T Consensus         3 ~~f~I~vvG~sg~GKSTliN~L~~~~~~~~~~~~~~~~~~~~~T~~i~~~~~~i~~~g~~~~l~iiDTpGfgd~~~~~~~   82 (276)
T cd01850           3 FQFNIMVVGESGLGKSTFINTLFNTKLIPSDYPPDPAEEHIDKTVEIKSSKAEIEENGVKLKLTVIDTPGFGDNINNSDC   82 (276)
T ss_pred             cEEEEEEEcCCCCCHHHHHHHHHcCCCccccCCCCccccccCCceEEEEEEEEEEECCEEEEEEEEecCCccccccchhh
Confidence            358999999999999999999998876433          233332 223344455677789999999993221      


Q ss_pred             --------------------ccccccCcC--CCcEEEEEEeCCCc-hhHHHHHHHHHHHHhhhCCCCCEEEEeeCCcccC
Q 036449           68 --------------------NRLRPLSYR--GADVFILAFSLISK-ASYENVSKKWIPELKHYAPGVPIILVGTKLDLRD  124 (197)
Q Consensus        68 --------------------~~~~~~~~~--~~~~~i~v~d~~~~-~s~~~~~~~~~~~i~~~~~~~~~ivv~nK~D~~~  124 (197)
                                          ...+...+.  .+|+++++++.+.. ....+  ..++..+..   ++|+++|+||+|+..
T Consensus        83 ~~~i~~yi~~q~~~~l~~e~~~~r~~~~~d~rvh~~ly~i~~~~~~l~~~D--~~~lk~l~~---~v~vi~VinK~D~l~  157 (276)
T cd01850          83 WKPIVDYIDDQFDQYLREESRIKRNPRIPDTRVHACLYFIEPTGHGLKPLD--IEFMKRLSK---RVNIIPVIAKADTLT  157 (276)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhhcccccCCCCceEEEEEEEeCCCCCCCHHH--HHHHHHHhc---cCCEEEEEECCCcCC
Confidence                                111212333  46788888887642 22222  244455543   589999999999965


Q ss_pred             CcccccCCCCCCcccHHHHHHHHHHhCCCceEEeccCC
Q 036449          125 DKQFFIDHPGAVPISTAQGEELRKLIGAPAYIECSSKT  162 (197)
Q Consensus       125 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~  162 (197)
                      ...        ........++.+..++. +++......
T Consensus       158 ~~e--------~~~~k~~i~~~l~~~~i-~~~~~~~~~  186 (276)
T cd01850         158 PEE--------LKEFKQRIMEDIEEHNI-KIYKFPEDE  186 (276)
T ss_pred             HHH--------HHHHHHHHHHHHHHcCC-ceECCCCCc
Confidence            322        01234556677777777 677766543

Septins are a conserved family of GTP-binding proteins associated with diverse processes in dividing and non-dividing cells. They were first discovered in the budding yeast S. cerevisiae as a set of genes (CDC3, CDC10, CDC11 and CDC12) required for normal bud morphology. Septins are also present in metazoan cells, where they are required for cytokinesis in some systems, and implicated in a variety of other processes involving organization of the cell cortex and exocytosis. In humans, 12 septin genes generate dozens of polypeptides, many of which comprise heterooligomeric complexes. Since septin mutants are commonly defective in cytokinesis and formation of the neck formation of the neck filaments/septin rings, septins have been considered to be the primary constituents of the neck filaments. Septins belong to the GTPase superfamily for their conserved GTPase motifs and enzymatic activities.

>COG3596 Predicted GTPase [General function prediction only]

Probab=99.70  E-value=8.6e-17  Score=114.99  Aligned_cols=172  Identities=15%  Similarity=0.106  Sum_probs=110.2

Q ss_pred             CCceeEEEEEcCCCCCHHHHHHHHhhCCCCCCC-CC-ceeeeeeEEEEECCeEEEEEEEeCCCccc-------ccccccc
Q 036449            3 ASRFIKCVTVGDGAVGKTCLLISYTSNTFPTDY-VP-TVFDNFSANVVVNGSTVNLGLWDTAGQED-------YNRLRPL   73 (197)
Q Consensus         3 ~~~~~~i~v~G~~~~GKstli~~~~~~~~~~~~-~~-~~~~~~~~~~~~~~~~~~~~i~D~~G~~~-------~~~~~~~   73 (197)
                      ....++|+++|..|+|||||+|+++.+...+-. .+ +..........+++  -.+.+||+||-.+       ++.....
T Consensus        36 ~~~pvnvLi~G~TG~GKSSliNALF~~~~~~v~~vg~~t~~~~~~~~~~~~--~~l~lwDtPG~gdg~~~D~~~r~~~~d  113 (296)
T COG3596          36 EKEPVNVLLMGATGAGKSSLINALFQGEVKEVSKVGVGTDITTRLRLSYDG--ENLVLWDTPGLGDGKDKDAEHRQLYRD  113 (296)
T ss_pred             ccCceeEEEecCCCCcHHHHHHHHHhccCceeeecccCCCchhhHHhhccc--cceEEecCCCcccchhhhHHHHHHHHH
Confidence            456799999999999999999999975543221 11 11111111122333  3577999999543       6677777


Q ss_pred             CcCCCcEEEEEEeCCCchhHHHHHHHHHHHHhhhCCCCCEEEEeeCCcccCCc----c-cccCCCCCCcccHHHH---HH
Q 036449           74 SYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLRDDK----Q-FFIDHPGAVPISTAQG---EE  145 (197)
Q Consensus        74 ~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~~~ivv~nK~D~~~~~----~-~~~~~~~~~~~~~~~~---~~  145 (197)
                      ++...|.++++.+..|+.---+. +.|.+.+... -+.++++++|.+|....-    . .....+.......+.+   .+
T Consensus       114 ~l~~~DLvL~l~~~~draL~~d~-~f~~dVi~~~-~~~~~i~~VtQ~D~a~p~~~W~~~~~~p~~a~~qfi~~k~~~~~~  191 (296)
T COG3596         114 YLPKLDLVLWLIKADDRALGTDE-DFLRDVIILG-LDKRVLFVVTQADRAEPGREWDSAGHQPSPAIKQFIEEKAEALGR  191 (296)
T ss_pred             HhhhccEEEEeccCCCccccCCH-HHHHHHHHhc-cCceeEEEEehhhhhccccccccccCCCCHHHHHHHHHHHHHHHH
Confidence            88899999999999887544443 3444444333 258999999999986542    1 0111111122222222   22


Q ss_pred             HHHHhCCCceEEeccCCCCCHHHHHHHHHHHHcCC
Q 036449          146 LRKLIGAPAYIECSSKTQQNVKAVFDAAIRVVLQP  180 (197)
Q Consensus       146 ~~~~~~~~~~~~~sa~~~~~i~~l~~~i~~~~~~~  180 (197)
                      +.+.  ..|++..+...+.|++++...+++.+...
T Consensus       192 ~~q~--V~pV~~~~~r~~wgl~~l~~ali~~lp~e  224 (296)
T COG3596         192 LFQE--VKPVVAVSGRLPWGLKELVRALITALPVE  224 (296)
T ss_pred             HHhh--cCCeEEeccccCccHHHHHHHHHHhCccc
Confidence            3322  34788899999999999999999977643

>PRK13351 elongation factor G; Reviewed

Probab=99.70  E-value=2.2e-16  Score=130.54  Aligned_cols=116  Identities=19%  Similarity=0.197  Sum_probs=82.4

Q ss_pred             CCceeEEEEEcCCCCCHHHHHHHHhhCCCC--------C-----C-------CCCceeeeeeEEEEECCeEEEEEEEeCC
Q 036449            3 ASRFIKCVTVGDGAVGKTCLLISYTSNTFP--------T-----D-------YVPTVFDNFSANVVVNGSTVNLGLWDTA   62 (197)
Q Consensus         3 ~~~~~~i~v~G~~~~GKstli~~~~~~~~~--------~-----~-------~~~~~~~~~~~~~~~~~~~~~~~i~D~~   62 (197)
                      ..+..+|+++|+.|+|||||+++++.....        .     +       +..|.... ...+.+.  .+.+++||||
T Consensus         5 ~~~irni~iiG~~~~GKTtL~~~ll~~~g~~~~~~~v~~~~~~~d~~~~e~~r~~ti~~~-~~~~~~~--~~~i~liDtP   81 (687)
T PRK13351          5 LMQIRNIGILAHIDAGKTTLTERILFYTGKIHKMGEVEDGTTVTDWMPQEQERGITIESA-ATSCDWD--NHRINLIDTP   81 (687)
T ss_pred             cccccEEEEECCCCCcchhHHHHHHHhcCCccccccccCCcccCCCCHHHHhcCCCcccc-eEEEEEC--CEEEEEEECC
Confidence            456789999999999999999999853210        0     0       01111100 1122233  4778899999


Q ss_pred             CccccccccccCcCCCcEEEEEEeCCCchhHHHHHHHHHHHHhhhCCCCCEEEEeeCCcccCC
Q 036449           63 GQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLRDD  125 (197)
Q Consensus        63 G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~~~ivv~nK~D~~~~  125 (197)
                      |+.+|...+..++..+|++++|+|.+++...+.. ..| ..+...  +.|+++++||+|+...
T Consensus        82 G~~df~~~~~~~l~~aD~~ilVvd~~~~~~~~~~-~~~-~~~~~~--~~p~iiviNK~D~~~~  140 (687)
T PRK13351         82 GHIDFTGEVERSLRVLDGAVVVFDAVTGVQPQTE-TVW-RQADRY--GIPRLIFINKMDRVGA  140 (687)
T ss_pred             CcHHHHHHHHHHHHhCCEEEEEEeCCCCCCHHHH-HHH-HHHHhc--CCCEEEEEECCCCCCC
Confidence            9999888888889999999999999988766544 333 334443  7899999999998753

>PTZ00141 elongation factor 1- alpha; Provisional

Probab=99.70  E-value=2.3e-16  Score=123.73  Aligned_cols=157  Identities=17%  Similarity=0.099  Sum_probs=97.0

Q ss_pred             CCceeEEEEEcCCCCCHHHHHHHHhhC--CCCC------------------------CCCCce---eeee-eEEEEECCe
Q 036449            3 ASRFIKCVTVGDGAVGKTCLLISYTSN--TFPT------------------------DYVPTV---FDNF-SANVVVNGS   52 (197)
Q Consensus         3 ~~~~~~i~v~G~~~~GKstli~~~~~~--~~~~------------------------~~~~~~---~~~~-~~~~~~~~~   52 (197)
                      +.+.++|+++|+.++|||||+.+++..  ....                        +..+..   +... .....+...
T Consensus         4 ~k~~~nv~i~Ghvd~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~~~s~~~a~~~D~~~~Er~rGiTid~~~~~~~~~   83 (446)
T PTZ00141          4 EKTHINLVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAEMGKGSFKYAWVLDKLKAERERGITIDIALWKFETP   83 (446)
T ss_pred             CCceEEEEEEecCCCCHHHHHHHHHHHcCCcChHHHHHHhhHHHhhCCcchhhhhhhcCChHHHhcCEeEEeeeEEEccC
Confidence            357799999999999999999988752  1110                        000000   0000 011122334


Q ss_pred             EEEEEEEeCCCccccccccccCcCCCcEEEEEEeCCCchh---H---HHHHHHHHHHHhhhCCCCC-EEEEeeCCcccC-
Q 036449           53 TVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKAS---Y---ENVSKKWIPELKHYAPGVP-IILVGTKLDLRD-  124 (197)
Q Consensus        53 ~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s---~---~~~~~~~~~~i~~~~~~~~-~ivv~nK~D~~~-  124 (197)
                      ...+.++|+||+.+|.......+..+|++++|+|++.+.-   +   ... ...+..+...  ++| +++++||+|... 
T Consensus        84 ~~~i~lIDtPGh~~f~~~~~~g~~~aD~ailVVda~~G~~e~~~~~~~qT-~eh~~~~~~~--gi~~iiv~vNKmD~~~~  160 (446)
T PTZ00141         84 KYYFTIIDAPGHRDFIKNMITGTSQADVAILVVASTAGEFEAGISKDGQT-REHALLAFTL--GVKQMIVCINKMDDKTV  160 (446)
T ss_pred             CeEEEEEECCChHHHHHHHHHhhhhcCEEEEEEEcCCCceecccCCCccH-HHHHHHHHHc--CCCeEEEEEEccccccc
Confidence            4678899999999998877778889999999999987531   1   111 2222333333  566 678999999532 


Q ss_pred             -CcccccCCCCCCcccHHHHHHHHHHhCC----CceEEeccCCCCCHHH
Q 036449          125 -DKQFFIDHPGAVPISTAQGEELRKLIGA----PAYIECSSKTQQNVKA  168 (197)
Q Consensus       125 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~sa~~~~~i~~  168 (197)
                       ...      .......++...+....+.    .+++++|+.+|+|+.+
T Consensus       161 ~~~~------~~~~~i~~~i~~~l~~~g~~~~~~~~ipiSa~~g~ni~~  203 (446)
T PTZ00141        161 NYSQ------ERYDEIKKEVSAYLKKVGYNPEKVPFIPISGWQGDNMIE  203 (446)
T ss_pred             hhhH------HHHHHHHHHHHHHHHhcCCCcccceEEEeecccCCCccc
Confidence             111      0111222344444444443    3799999999999864

>PRK00741 prfC peptide chain release factor 3; Provisional

Probab=99.69  E-value=1.1e-15  Score=121.79  Aligned_cols=117  Identities=15%  Similarity=0.101  Sum_probs=78.3

Q ss_pred             CceeEEEEEcCCCCCHHHHHHHHhhCCCCCCCC----------Cce----------eeee-eEEEEECCeEEEEEEEeCC
Q 036449            4 SRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYV----------PTV----------FDNF-SANVVVNGSTVNLGLWDTA   62 (197)
Q Consensus         4 ~~~~~i~v~G~~~~GKstli~~~~~~~~~~~~~----------~~~----------~~~~-~~~~~~~~~~~~~~i~D~~   62 (197)
                      .+.-+|+++|+.++|||||+.+++...-.....          .+.          +..+ .....+....+.+++||||
T Consensus         8 ~~~Rni~IiGh~daGKTTL~e~Ll~~~g~i~~~g~v~~~~~~~~~~~D~~~~E~~rgiSi~~~~~~~~~~~~~inliDTP   87 (526)
T PRK00741          8 AKRRTFAIISHPDAGKTTLTEKLLLFGGAIQEAGTVKGRKSGRHATSDWMEMEKQRGISVTSSVMQFPYRDCLINLLDTP   87 (526)
T ss_pred             hcCCEEEEECCCCCCHHHHHHHHHHhCCCccccceeeccccCccccCCCcHHHHhhCCceeeeeEEEEECCEEEEEEECC
Confidence            355689999999999999999997421110000          000          0011 1112223334778899999


Q ss_pred             CccccccccccCcCCCcEEEEEEeCCCchhHHHHHHHHHHHHhhhCCCCCEEEEeeCCcccC
Q 036449           63 GQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLRD  124 (197)
Q Consensus        63 G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~~~ivv~nK~D~~~  124 (197)
                      |+..|.......+..+|++|+|+|+++......  ..++......  ++|+++++||+|+..
T Consensus        88 G~~df~~~~~~~l~~aD~aIlVvDa~~gv~~~t--~~l~~~~~~~--~iPiiv~iNK~D~~~  145 (526)
T PRK00741         88 GHEDFSEDTYRTLTAVDSALMVIDAAKGVEPQT--RKLMEVCRLR--DTPIFTFINKLDRDG  145 (526)
T ss_pred             CchhhHHHHHHHHHHCCEEEEEEecCCCCCHHH--HHHHHHHHhc--CCCEEEEEECCcccc
Confidence            999888766667889999999999988643322  3444444433  799999999999864

>cd04170 EF-G_bact Elongation factor G (EF-G) subfamily

Probab=99.69  E-value=1e-15  Score=113.27  Aligned_cols=149  Identities=21%  Similarity=0.197  Sum_probs=93.2

Q ss_pred             EEEEEcCCCCCHHHHHHHHhhCCCCCCCCC-----ce-----------e---eeeeEEEEECCeEEEEEEEeCCCccccc
Q 036449            8 KCVTVGDGAVGKTCLLISYTSNTFPTDYVP-----TV-----------F---DNFSANVVVNGSTVNLGLWDTAGQEDYN   68 (197)
Q Consensus         8 ~i~v~G~~~~GKstli~~~~~~~~~~~~~~-----~~-----------~---~~~~~~~~~~~~~~~~~i~D~~G~~~~~   68 (197)
                      +|+++|++|+|||||+++++..........     +.           +   ......+.+++  +.+++|||||+..|.
T Consensus         1 ni~ivG~~gsGKStL~~~Ll~~~g~~~~~g~v~~g~~~~d~~~~e~~r~~ti~~~~~~~~~~~--~~i~liDtPG~~~f~   78 (268)
T cd04170           1 NIALVGHSGSGKTTLAEALLYATGAIDRLGSVEDGTTVSDYDPEEIKRKMSISTSVAPLEWKG--HKINLIDTPGYADFV   78 (268)
T ss_pred             CEEEECCCCCCHHHHHHHHHHhcCCCccCCeecCCcccCCCCHHHHhhcccccceeEEEEECC--EEEEEEECcCHHHHH
Confidence            589999999999999999875332111000     00           0   00011222333  678899999998887


Q ss_pred             cccccCcCCCcEEEEEEeCCCchhHHHHHHHHHHHHhhhCCCCCEEEEeeCCcccCCcccccCCCCCCcccHHHHHHHHH
Q 036449           69 RLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPISTAQGEELRK  148 (197)
Q Consensus        69 ~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~  148 (197)
                      ......+..+|++++|+|.++.......  ..+..+...  +.|.++++||+|......            .+....+.+
T Consensus        79 ~~~~~~l~~aD~~i~Vvd~~~g~~~~~~--~~~~~~~~~--~~p~iivvNK~D~~~~~~------------~~~~~~l~~  142 (268)
T cd04170          79 GETRAALRAADAALVVVSAQSGVEVGTE--KLWEFADEA--GIPRIIFINKMDRERADF------------DKTLAALQE  142 (268)
T ss_pred             HHHHHHHHHCCEEEEEEeCCCCCCHHHH--HHHHHHHHc--CCCEEEEEECCccCCCCH------------HHHHHHHHH
Confidence            7777788999999999999987655433  223334433  789999999999865321            233344555


Q ss_pred             HhCCCceEE--eccCCCCCHHHHHHHHHH
Q 036449          149 LIGAPAYIE--CSSKTQQNVKAVFDAAIR  175 (197)
Q Consensus       149 ~~~~~~~~~--~sa~~~~~i~~l~~~i~~  175 (197)
                      .++. +++.  +...++.++..+.+.+..
T Consensus       143 ~~~~-~~~~~~ip~~~~~~~~~~vd~~~~  170 (268)
T cd04170         143 AFGR-PVVPLQLPIGEGDDFKGVVDLLTE  170 (268)
T ss_pred             HhCC-CeEEEEecccCCCceeEEEEcccC
Confidence            5554 3433  445555555444444433

Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group

>KOG1145 consensus Mitochondrial translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]

Probab=99.68  E-value=3.7e-16  Score=120.79  Aligned_cols=161  Identities=20%  Similarity=0.242  Sum_probs=112.9

Q ss_pred             CceeEEEEEcCCCCCHHHHHHHHhhCCCCCCCCCceeeeeeEE-EEECCeEEEEEEEeCCCccccccccccCcCCCcEEE
Q 036449            4 SRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSAN-VVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFI   82 (197)
Q Consensus         4 ~~~~~i~v~G~~~~GKstli~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i   82 (197)
                      ++..-|-++|+..-|||||+..|.+.........-+....... +..+ ..-.++|.|||||..|..++.....-.|+++
T Consensus       151 ~RpPVVTiMGHVDHGKTTLLD~lRks~VAA~E~GGITQhIGAF~V~~p-~G~~iTFLDTPGHaAF~aMRaRGA~vtDIvV  229 (683)
T KOG1145|consen  151 PRPPVVTIMGHVDHGKTTLLDALRKSSVAAGEAGGITQHIGAFTVTLP-SGKSITFLDTPGHAAFSAMRARGANVTDIVV  229 (683)
T ss_pred             CCCCeEEEeecccCChhhHHHHHhhCceehhhcCCccceeceEEEecC-CCCEEEEecCCcHHHHHHHHhccCccccEEE
Confidence            4667799999999999999999998877655555544444322 2222 2256789999999999999999999999999


Q ss_pred             EEEeCCCchhHHHHHHHHHHHHhhhC-CCCCEEEEeeCCcccCCcccccCCCCCCcccHH---HHHHHHHHhCCCceEEe
Q 036449           83 LAFSLISKASYENVSKKWIPELKHYA-PGVPIILVGTKLDLRDDKQFFIDHPGAVPISTA---QGEELRKLIGAPAYIEC  158 (197)
Q Consensus        83 ~v~d~~~~~s~~~~~~~~~~~i~~~~-~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~  158 (197)
                      +|+.+.|+---+..     +.|.... .+.|++++.||+|..+.+.        ..+..+   ......+--|.++++++
T Consensus       230 LVVAadDGVmpQT~-----EaIkhAk~A~VpiVvAinKiDkp~a~p--------ekv~~eL~~~gi~~E~~GGdVQvipi  296 (683)
T KOG1145|consen  230 LVVAADDGVMPQTL-----EAIKHAKSANVPIVVAINKIDKPGANP--------EKVKRELLSQGIVVEDLGGDVQVIPI  296 (683)
T ss_pred             EEEEccCCccHhHH-----HHHHHHHhcCCCEEEEEeccCCCCCCH--------HHHHHHHHHcCccHHHcCCceeEEEe
Confidence            99999987433333     2233222 4899999999999865331        001111   11112222244578999


Q ss_pred             ccCCCCCHHHHHHHHHHHHc
Q 036449          159 SSKTQQNVKAVFDAAIRVVL  178 (197)
Q Consensus       159 sa~~~~~i~~l~~~i~~~~~  178 (197)
                      ||++|.|++.|-+.+.-++.
T Consensus       297 SAl~g~nl~~L~eaill~Ae  316 (683)
T KOG1145|consen  297 SALTGENLDLLEEAILLLAE  316 (683)
T ss_pred             ecccCCChHHHHHHHHHHHH
Confidence            99999999999998876543

>KOG0462 consensus Elongation factor-type GTP-binding protein [Translation, ribosomal structure and biogenesis]

Probab=99.68  E-value=1.2e-15  Score=117.93  Aligned_cols=165  Identities=23%  Similarity=0.191  Sum_probs=117.7

Q ss_pred             CceeEEEEEcCCCCCHHHHHHHHhhCCC--CC---------------CCCCceeeeeeEEEEECCeEEEEEEEeCCCccc
Q 036449            4 SRFIKCVTVGDGAVGKTCLLISYTSNTF--PT---------------DYVPTVFDNFSANVVVNGSTVNLGLWDTAGQED   66 (197)
Q Consensus         4 ~~~~~i~v~G~~~~GKstli~~~~~~~~--~~---------------~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~   66 (197)
                      ++.=++.++-+...|||||..+++....  ..               +.--|........+..++..+.++++|||||-+
T Consensus        58 ~~iRNfsIIAHVDHGKSTLaDrLLe~tg~i~~~~~q~q~LDkl~vERERGITIkaQtasify~~~~~ylLNLIDTPGHvD  137 (650)
T KOG0462|consen   58 ENIRNFSIIAHVDHGKSTLADRLLELTGTIDNNIGQEQVLDKLQVERERGITIKAQTASIFYKDGQSYLLNLIDTPGHVD  137 (650)
T ss_pred             hhccceEEEEEecCCcchHHHHHHHHhCCCCCCCchhhhhhhhhhhhhcCcEEEeeeeEEEEEcCCceEEEeecCCCccc
Confidence            3455789999999999999999885322  11               111111111111222346779999999999999


Q ss_pred             cccccccCcCCCcEEEEEEeCCCchhHHHHHHHHHHHHhhhCCCCCEEEEeeCCcccCCcccccCCCCCCcccHHHHHHH
Q 036449           67 YNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPISTAQGEEL  146 (197)
Q Consensus        67 ~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~  146 (197)
                      |.......+.-|+++|+|+|++.+-.-+.. ..++..++.   +..+|.|.||+|+...+.         ..-..+..++
T Consensus       138 Fs~EVsRslaac~G~lLvVDA~qGvqAQT~-anf~lAfe~---~L~iIpVlNKIDlp~adp---------e~V~~q~~~l  204 (650)
T KOG0462|consen  138 FSGEVSRSLAACDGALLVVDASQGVQAQTV-ANFYLAFEA---GLAIIPVLNKIDLPSADP---------ERVENQLFEL  204 (650)
T ss_pred             ccceehehhhhcCceEEEEEcCcCchHHHH-HHHHHHHHc---CCeEEEeeeccCCCCCCH---------HHHHHHHHHH
Confidence            999988899999999999999998777776 344444433   588999999999987542         0112233344


Q ss_pred             HHHhCCCceEEeccCCCCCHHHHHHHHHHHHcCCCc
Q 036449          147 RKLIGAPAYIECSSKTQQNVKAVFDAAIRVVLQPPK  182 (197)
Q Consensus       147 ~~~~~~~~~~~~sa~~~~~i~~l~~~i~~~~~~~~~  182 (197)
                      ....+. +.+.+||++|.|++++++.|++.+..+..
T Consensus       205 F~~~~~-~~i~vSAK~G~~v~~lL~AII~rVPpP~~  239 (650)
T KOG0462|consen  205 FDIPPA-EVIYVSAKTGLNVEELLEAIIRRVPPPKG  239 (650)
T ss_pred             hcCCcc-ceEEEEeccCccHHHHHHHHHhhCCCCCC
Confidence            444444 78999999999999999999998877643

>COG2262 HflX GTPases [General function prediction only]

Probab=99.68  E-value=2e-15  Score=113.58  Aligned_cols=158  Identities=20%  Similarity=0.187  Sum_probs=110.8

Q ss_pred             CceeEEEEEcCCCCCHHHHHHHHhhCCC-CCCCCCceeeeeeEEEEECCeEEEEEEEeCCCcc---------cccccccc
Q 036449            4 SRFIKCVTVGDGAVGKTCLLISYTSNTF-PTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQE---------DYNRLRPL   73 (197)
Q Consensus         4 ~~~~~i~v~G~~~~GKstli~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~---------~~~~~~~~   73 (197)
                      +....|.++|-.++|||||+|++.+... ..+...++-+.....+.+.+ ...+.+.||.|--         .|.+... 
T Consensus       190 ~~~p~vaLvGYTNAGKSTL~N~LT~~~~~~~d~LFATLdpttR~~~l~~-g~~vlLtDTVGFI~~LP~~LV~AFksTLE-  267 (411)
T COG2262         190 SGIPLVALVGYTNAGKSTLFNALTGADVYVADQLFATLDPTTRRIELGD-GRKVLLTDTVGFIRDLPHPLVEAFKSTLE-  267 (411)
T ss_pred             cCCCeEEEEeeccccHHHHHHHHhccCeeccccccccccCceeEEEeCC-CceEEEecCccCcccCChHHHHHHHHHHH-
Confidence            4568899999999999999999996443 34445555555555555553 2345689999932         2333222 


Q ss_pred             CcCCCcEEEEEEeCCCchhHHHHHHHHHHHHhhhC-CCCCEEEEeeCCcccCCcccccCCCCCCcccHHHHHHHHHHhCC
Q 036449           74 SYRGADVFILAFSLISKASYENVSKKWIPELKHYA-PGVPIILVGTKLDLRDDKQFFIDHPGAVPISTAQGEELRKLIGA  152 (197)
Q Consensus        74 ~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~i~~~~-~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  152 (197)
                      -...+|+++.|+|++++...+.+ ......+.... .+.|+++|.||+|+....               .......... 
T Consensus       268 E~~~aDlllhVVDaSdp~~~~~~-~~v~~vL~el~~~~~p~i~v~NKiD~~~~~---------------~~~~~~~~~~-  330 (411)
T COG2262         268 EVKEADLLLHVVDASDPEILEKL-EAVEDVLAEIGADEIPIILVLNKIDLLEDE---------------EILAELERGS-  330 (411)
T ss_pred             HhhcCCEEEEEeecCChhHHHHH-HHHHHHHHHcCCCCCCEEEEEecccccCch---------------hhhhhhhhcC-
Confidence            23479999999999999766666 55556666553 479999999999986532               1112222222 


Q ss_pred             CceEEeccCCCCCHHHHHHHHHHHHcCC
Q 036449          153 PAYIECSSKTQQNVKAVFDAAIRVVLQP  180 (197)
Q Consensus       153 ~~~~~~sa~~~~~i~~l~~~i~~~~~~~  180 (197)
                      +..+.+||++|.|++.+.+.|...+...
T Consensus       331 ~~~v~iSA~~~~gl~~L~~~i~~~l~~~  358 (411)
T COG2262         331 PNPVFISAKTGEGLDLLRERIIELLSGL  358 (411)
T ss_pred             CCeEEEEeccCcCHHHHHHHHHHHhhhc
Confidence            2589999999999999999999987743

>COG1163 DRG Predicted GTPase [General function prediction only]

Probab=99.67  E-value=5.8e-15  Score=107.81  Aligned_cols=156  Identities=21%  Similarity=0.207  Sum_probs=108.5

Q ss_pred             CceeEEEEEcCCCCCHHHHHHHHhhCCC-CCCCCCceeeeeeEEEEECCeEEEEEEEeCCCcccc-------ccccccCc
Q 036449            4 SRFIKCVTVGDGAVGKTCLLISYTSNTF-PTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQEDY-------NRLRPLSY   75 (197)
Q Consensus         4 ~~~~~i~v~G~~~~GKstli~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~-------~~~~~~~~   75 (197)
                      +..-+++++|.|.+|||||++++.+... ...|+.|+.......+.+++  .++|+.|+||.-.-       ........
T Consensus        61 sGda~v~lVGfPsvGKStLL~~LTnt~seva~y~FTTl~~VPG~l~Y~g--a~IQild~Pgii~gas~g~grG~~vlsv~  138 (365)
T COG1163          61 SGDATVALVGFPSVGKSTLLNKLTNTKSEVADYPFTTLEPVPGMLEYKG--AQIQLLDLPGIIEGASSGRGRGRQVLSVA  138 (365)
T ss_pred             cCCeEEEEEcCCCccHHHHHHHHhCCCccccccCceecccccceEeecC--ceEEEEcCcccccCcccCCCCcceeeeee
Confidence            3456899999999999999999998665 46677777666666777777  77889999984211       13344568


Q ss_pred             CCCcEEEEEEeCCCchh-HHHHHHHHH-------------------------------------------HHH-------
Q 036449           76 RGADVFILAFSLISKAS-YENVSKKWI-------------------------------------------PEL-------  104 (197)
Q Consensus        76 ~~~~~~i~v~d~~~~~s-~~~~~~~~~-------------------------------------------~~i-------  104 (197)
                      ++||++++|+|+..... .+.+..++.                                           ...       
T Consensus       139 R~ADlIiiVld~~~~~~~~~~i~~ELe~~GIrlnk~~p~V~I~kk~~gGI~i~~t~~l~~~d~~~ir~iL~Ey~I~nA~V  218 (365)
T COG1163         139 RNADLIIIVLDVFEDPHHRDIIERELEDVGIRLNKRPPDVTIKKKESGGIRINGTGPLTHLDEDTVRAILREYRIHNADV  218 (365)
T ss_pred             ccCCEEEEEEecCCChhHHHHHHHHHHhcCeEecCCCCceEEEEeccCCEEEecccccccCCHHHHHHHHHHhCcccceE
Confidence            89999999999986543 222211111                                           000       


Q ss_pred             ---------------hhhCCCCCEEEEeeCCcccCCcccccCCCCCCcccHHHHHHHHHHhCCCceEEeccCCCCCHHHH
Q 036449          105 ---------------KHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQQNVKAV  169 (197)
Q Consensus       105 ---------------~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~l  169 (197)
                                     .....-+|.+.|.||.|+..               .++...+.+..   ..+.+||..+.|++++
T Consensus       219 ~Ir~dvTlDd~id~l~~nrvY~p~l~v~NKiD~~~---------------~e~~~~l~~~~---~~v~isa~~~~nld~L  280 (365)
T COG1163         219 LIREDVTLDDLIDALEGNRVYKPALYVVNKIDLPG---------------LEELERLARKP---NSVPISAKKGINLDEL  280 (365)
T ss_pred             EEecCCcHHHHHHHHhhcceeeeeEEEEecccccC---------------HHHHHHHHhcc---ceEEEecccCCCHHHH
Confidence                           00000128899999999854               34444444443   6889999999999999


Q ss_pred             HHHHHHHHcC
Q 036449          170 FDAAIRVVLQ  179 (197)
Q Consensus       170 ~~~i~~~~~~  179 (197)
                      .+.|.+.+.-
T Consensus       281 ~e~i~~~L~l  290 (365)
T COG1163         281 KERIWDVLGL  290 (365)
T ss_pred             HHHHHHhhCe
Confidence            9999987654

>PRK05506 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Provisional

Probab=99.67  E-value=4.6e-16  Score=127.39  Aligned_cols=156  Identities=20%  Similarity=0.139  Sum_probs=93.7

Q ss_pred             CceeEEEEEcCCCCCHHHHHHHHhhCCC--CCC----------CCCceeeee--------------------eEEEEECC
Q 036449            4 SRFIKCVTVGDGAVGKTCLLISYTSNTF--PTD----------YVPTVFDNF--------------------SANVVVNG   51 (197)
Q Consensus         4 ~~~~~i~v~G~~~~GKstli~~~~~~~~--~~~----------~~~~~~~~~--------------------~~~~~~~~   51 (197)
                      ...++|+++|++++|||||+++++...-  ...          ...++.+.+                    .....+..
T Consensus        22 ~~~~~i~iiGh~~~GKSTL~~~Ll~~~~~i~~~~~~~~~~~~~~~g~tr~~~~~~~~~d~~~~E~~rg~Tid~~~~~~~~  101 (632)
T PRK05506         22 KSLLRFITCGSVDDGKSTLIGRLLYDSKMIFEDQLAALERDSKKVGTQGDEIDLALLVDGLAAEREQGITIDVAYRYFAT  101 (632)
T ss_pred             CCeeEEEEECCCCCChHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCCCCcceeeeeccCCHHHHhCCcCceeeeeEEcc
Confidence            5679999999999999999999885321  100          011100000                    00111122


Q ss_pred             eEEEEEEEeCCCccccccccccCcCCCcEEEEEEeCCCchhHHHHHHHHHHHHhhhCCCCCEEEEeeCCcccCCcccccC
Q 036449           52 STVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLRDDKQFFID  131 (197)
Q Consensus        52 ~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~~~ivv~nK~D~~~~~~~~~~  131 (197)
                      ....+.++||||++.|.......+..+|++++|+|++.+..-+..  .....+... ...++++++||+|+.+...    
T Consensus       102 ~~~~~~liDtPG~~~f~~~~~~~~~~aD~~llVvda~~g~~~~t~--e~~~~~~~~-~~~~iivvvNK~D~~~~~~----  174 (632)
T PRK05506        102 PKRKFIVADTPGHEQYTRNMVTGASTADLAIILVDARKGVLTQTR--RHSFIASLL-GIRHVVLAVNKMDLVDYDQ----  174 (632)
T ss_pred             CCceEEEEECCChHHHHHHHHHHHHhCCEEEEEEECCCCccccCH--HHHHHHHHh-CCCeEEEEEEecccccchh----
Confidence            234677999999988766555567899999999999876433222  111222222 1357889999999964221    


Q ss_pred             CCCCCcccHHHHHHHHHHhCC--CceEEeccCCCCCHHH
Q 036449          132 HPGAVPISTAQGEELRKLIGA--PAYIECSSKTQQNVKA  168 (197)
Q Consensus       132 ~~~~~~~~~~~~~~~~~~~~~--~~~~~~sa~~~~~i~~  168 (197)
                        ........+...+....+.  .+++++||++|.|+.+
T Consensus       175 --~~~~~i~~~i~~~~~~~~~~~~~iipiSA~~g~ni~~  211 (632)
T PRK05506        175 --EVFDEIVADYRAFAAKLGLHDVTFIPISALKGDNVVT  211 (632)
T ss_pred             --HHHHHHHHHHHHHHHHcCCCCccEEEEecccCCCccc
Confidence              0000111233344445554  2589999999999874

>cd01852 AIG1 AIG1 (avrRpt2-induced gene 1)

Probab=99.67  E-value=7.4e-15  Score=103.86  Aligned_cols=164  Identities=18%  Similarity=0.161  Sum_probs=101.3

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhhCCCCCCC---CCceeeeeeEEEEECCeEEEEEEEeCCCcccccc-----------ccc
Q 036449            7 IKCVTVGDGAVGKTCLLISYTSNTFPTDY---VPTVFDNFSANVVVNGSTVNLGLWDTAGQEDYNR-----------LRP   72 (197)
Q Consensus         7 ~~i~v~G~~~~GKstli~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~-----------~~~   72 (197)
                      ++|+++|.+|+|||||+|++++.......   .+.+.........+.+  ..+.++||||......           ...
T Consensus         1 ~~i~lvG~~g~GKSsl~N~ilg~~~~~~~~~~~~~T~~~~~~~~~~~~--~~i~viDTPG~~d~~~~~~~~~~~i~~~~~   78 (196)
T cd01852           1 LRLVLVGKTGAGKSATGNTILGREVFESKLSASSVTKTCQKESAVWDG--RRVNVIDTPGLFDTSVSPEQLSKEIVRCLS   78 (196)
T ss_pred             CEEEEECCCCCCHHHHHHHhhCCCccccccCCCCcccccceeeEEECC--eEEEEEECcCCCCccCChHHHHHHHHHHHH
Confidence            58999999999999999999987543221   1222222233334455  4677999999543321           112


Q ss_pred             cCcCCCcEEEEEEeCCCchhHHHHHHHHHHHHhhhCC---CCCEEEEeeCCcccCCcccccCCCCCCcccHHHHHHHHHH
Q 036449           73 LSYRGADVFILAFSLISKASYENVSKKWIPELKHYAP---GVPIILVGTKLDLRDDKQFFIDHPGAVPISTAQGEELRKL  149 (197)
Q Consensus        73 ~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~---~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~  149 (197)
                      ....+.|++++|+++.+ .+-.+  ...+..+...+.   -.+++++.|+.|.......    ...........+.+.+.
T Consensus        79 ~~~~g~~~illVi~~~~-~t~~d--~~~l~~l~~~fg~~~~~~~ivv~T~~d~l~~~~~----~~~~~~~~~~l~~l~~~  151 (196)
T cd01852          79 LSAPGPHAFLLVVPLGR-FTEEE--EQAVETLQELFGEKVLDHTIVLFTRGDDLEGGTL----EDYLENSCEALKRLLEK  151 (196)
T ss_pred             hcCCCCEEEEEEEECCC-cCHHH--HHHHHHHHHHhChHhHhcEEEEEECccccCCCcH----HHHHHhccHHHHHHHHH
Confidence            23467899999999987 33222  344555555432   2578899999997653210    00000112445666666


Q ss_pred             hCCCceEEec-----cCCCCCHHHHHHHHHHHHcCC
Q 036449          150 IGAPAYIECS-----SKTQQNVKAVFDAAIRVVLQP  180 (197)
Q Consensus       150 ~~~~~~~~~s-----a~~~~~i~~l~~~i~~~~~~~  180 (197)
                      .+. .++..+     +..+.++.+|++.|.+++.++
T Consensus       152 c~~-r~~~f~~~~~~~~~~~q~~~Ll~~i~~~~~~~  186 (196)
T cd01852         152 CGG-RYVAFNNKAKGEEQEQQVKELLAKVESMVKEN  186 (196)
T ss_pred             hCC-eEEEEeCCCCcchhHHHHHHHHHHHHHHHHhc
Confidence            665 555554     445789999999999988763

This represents Arabidoposis protein AIG1 that appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 exhibits RPS2- and avrRpt1-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2. This subfamily also includes IAN-4 protein, which has GTP-binding activity and shares sequence homology with a novel family of putative GTP-binding proteins: the immuno-associated nucleotide (IAN) family. The evolutionary conservation of the IAN family provides a unique example of a plant pathogen response gene conserved in animals. The IAN/IMAP subfamily has been proposed to regulate apoptosis in vertebrates and angiosperm plants, particularly in relation to cancer, diabetes, and infections. The human IAN genes were renamed GIMAP (GTPase of the immunity associated proteins).

>PF01926 MMR_HSR1: 50S ribosome-binding GTPase; InterPro: IPR002917 Human HSR1, has been localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse

Probab=99.66  E-value=1.5e-15  Score=98.52  Aligned_cols=105  Identities=27%  Similarity=0.277  Sum_probs=69.4

Q ss_pred             EEEEEcCCCCCHHHHHHHHhhCCC--CCCCCCceeeeeeEEEEECCeEEEEEEEeCCCcccc---------ccccccCcC
Q 036449            8 KCVTVGDGAVGKTCLLISYTSNTF--PTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQEDY---------NRLRPLSYR   76 (197)
Q Consensus         8 ~i~v~G~~~~GKstli~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~---------~~~~~~~~~   76 (197)
                      +|+++|.+|+|||||++++.+...  .....+++.........+++..  +.++||||...-         .......+.
T Consensus         1 ~V~iiG~~~~GKSTlin~l~~~~~~~~~~~~~~T~~~~~~~~~~~~~~--~~~vDtpG~~~~~~~~~~~~~~~~~~~~~~   78 (116)
T PF01926_consen    1 RVAIIGRPNVGKSTLINALTGKKLAKVSNIPGTTRDPVYGQFEYNNKK--FILVDTPGINDGESQDNDGKEIRKFLEQIS   78 (116)
T ss_dssp             EEEEEESTTSSHHHHHHHHHTSTSSEESSSTTSSSSEEEEEEEETTEE--EEEEESSSCSSSSHHHHHHHHHHHHHHHHC
T ss_pred             CEEEECCCCCCHHHHHHHHhccccccccccccceeeeeeeeeeeceee--EEEEeCCCCcccchhhHHHHHHHHHHHHHH
Confidence            699999999999999999997533  2333344433333444556644  459999995321         111222347


Q ss_pred             CCcEEEEEEeCCCchhHHHHHHHHHHHHhhhCCCCCEEEEeeC
Q 036449           77 GADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTK  119 (197)
Q Consensus        77 ~~~~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~~~ivv~nK  119 (197)
                      .+|++++|+|.+++.. +.. ..++..++   .+.|+++|+||
T Consensus        79 ~~d~ii~vv~~~~~~~-~~~-~~~~~~l~---~~~~~i~v~NK  116 (116)
T PF01926_consen   79 KSDLIIYVVDASNPIT-EDD-KNILRELK---NKKPIILVLNK  116 (116)
T ss_dssp             TESEEEEEEETTSHSH-HHH-HHHHHHHH---TTSEEEEEEES
T ss_pred             HCCEEEEEEECCCCCC-HHH-HHHHHHHh---cCCCEEEEEcC
Confidence            8999999999877422 222 35555554   47999999998

These proteins represent a new subfamily of GTP-binding proteins that has both prokaryote and eukaryote members [].; GO: 0005525 GTP binding, 0005622 intracellular; PDB: 2DWQ_B 2DBY_A 3CNN_A 3CNO_A 3CNL_A 3IBY_A 1PUI_B 1WXQ_A 1LNZ_A 3GEE_A ....

>PTZ00327 eukaryotic translation initiation factor 2 gamma subunit; Provisional

Probab=99.66  E-value=1.7e-15  Score=118.67  Aligned_cols=166  Identities=14%  Similarity=0.107  Sum_probs=102.5

Q ss_pred             CCceeEEEEEcCCCCCHHHHHHHHhhCCC---CCCC--CCceeeeeeE------------EE--EEC------------C
Q 036449            3 ASRFIKCVTVGDGAVGKTCLLISYTSNTF---PTDY--VPTVFDNFSA------------NV--VVN------------G   51 (197)
Q Consensus         3 ~~~~~~i~v~G~~~~GKstli~~~~~~~~---~~~~--~~~~~~~~~~------------~~--~~~------------~   51 (197)
                      ....++|.++|+...|||||+.+|.....   .++.  --|...-|..            ..  ...            +
T Consensus        31 ~~~~~~ig~~GHVDhGKTtLv~aLtg~~~~r~~~E~~rGiTi~lGfa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  110 (460)
T PTZ00327         31 RQATINIGTIGHVAHGKSTVVKALSGVKTVRFKREKVRNITIKLGYANAKIYKCPKCPRPTCYQSYGSSKPDNPPCPGCG  110 (460)
T ss_pred             CCCcEEEEEEccCCCCHHHHHHHHhCCCcccchhhHHhCCchhccccccccccCcccCCcccccccCCCccccccccccc
Confidence            45679999999999999999999985322   1100  0000000000            00  000            0


Q ss_pred             ----eEEEEEEEeCCCccccccccccCcCCCcEEEEEEeCCCc-hhHHHHHHHHHHHHhhhCCCCCEEEEeeCCcccCCc
Q 036449           52 ----STVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISK-ASYENVSKKWIPELKHYAPGVPIILVGTKLDLRDDK  126 (197)
Q Consensus        52 ----~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~-~s~~~~~~~~~~~i~~~~~~~~~ivv~nK~D~~~~~  126 (197)
                          ....+.++|+||++.|.......+..+|++++|+|++++ ...+..  +.+..+... .-.++++|.||+|+.+..
T Consensus       111 ~~~~~~~~i~~IDtPGH~~fi~~m~~g~~~~D~alLVVda~~g~~~~qT~--ehl~i~~~l-gi~~iIVvlNKiDlv~~~  187 (460)
T PTZ00327        111 HKMTLKRHVSFVDCPGHDILMATMLNGAAVMDAALLLIAANESCPQPQTS--EHLAAVEIM-KLKHIIILQNKIDLVKEA  187 (460)
T ss_pred             ccccccceEeeeeCCCHHHHHHHHHHHHhhCCEEEEEEECCCCccchhhH--HHHHHHHHc-CCCcEEEEEecccccCHH
Confidence                023678999999999887766777899999999999874 222222  222222222 124689999999996532


Q ss_pred             ccccCCCCCCcccHHHHHHHHHHh--CCCceEEeccCCCCCHHHHHHHHHHHHcC
Q 036449          127 QFFIDHPGAVPISTAQGEELRKLI--GAPAYIECSSKTQQNVKAVFDAAIRVVLQ  179 (197)
Q Consensus       127 ~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~sa~~~~~i~~l~~~i~~~~~~  179 (197)
                      .        .....++.+.+....  ...+++++||++|.|+++|++.|.+.+..
T Consensus       188 ~--------~~~~~~ei~~~l~~~~~~~~~iipVSA~~G~nI~~Ll~~L~~~lp~  234 (460)
T PTZ00327        188 Q--------AQDQYEEIRNFVKGTIADNAPIIPISAQLKYNIDVVLEYICTQIPI  234 (460)
T ss_pred             H--------HHHHHHHHHHHHHhhccCCCeEEEeeCCCCCCHHHHHHHHHhhCCC
Confidence            1        001122333333221  22389999999999999999999976544

>cd01899 Ygr210 Ygr210 subfamily

Probab=99.65  E-value=9.5e-15  Score=109.66  Aligned_cols=80  Identities=25%  Similarity=0.299  Sum_probs=53.5

Q ss_pred             EEEEcCCCCCHHHHHHHHhhCCCC-CCCCCceee-eeeEEE--------------------EECC-eEEEEEEEeCCCc-
Q 036449            9 CVTVGDGAVGKTCLLISYTSNTFP-TDYVPTVFD-NFSANV--------------------VVNG-STVNLGLWDTAGQ-   64 (197)
Q Consensus         9 i~v~G~~~~GKstli~~~~~~~~~-~~~~~~~~~-~~~~~~--------------------~~~~-~~~~~~i~D~~G~-   64 (197)
                      |+++|.++||||||++++.+.... .+++.++.+ ......                    ..++ ..+.+++||+||. 
T Consensus         1 i~ivG~pnvGKStLfn~lt~~~~~~~~~pftT~~p~~g~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~v~i~l~D~aGlv   80 (318)
T cd01899           1 IGLVGKPNAGKSTFFNAATLADVEIANYPFTTIDPNVGVGYVRVECPCKELGVSCNPRYGKCIDGKRYVPVELIDVAGLV   80 (318)
T ss_pred             CEEECCCCCCHHHHHHHHhCCCCcccCCCCccccceeEEEEEecCCCchhhhhhhcccccccccCcCcceEEEEECCCCC
Confidence            579999999999999999987643 233333311 111111                    1222 3467999999997 


Q ss_pred             ---ccccccccc---CcCCCcEEEEEEeCC
Q 036449           65 ---EDYNRLRPL---SYRGADVFILAFSLI   88 (197)
Q Consensus        65 ---~~~~~~~~~---~~~~~~~~i~v~d~~   88 (197)
                         +++..+-..   .++++|++++|+|++
T Consensus        81 ~ga~~~~glg~~fL~~ir~aD~ii~Vvd~~  110 (318)
T cd01899          81 PGAHEGKGLGNKFLDDLRDADALIHVVDAS  110 (318)
T ss_pred             CCccchhhHHHHHHHHHHHCCEEEEEEeCC
Confidence               334444334   388999999999997

Ygr210 is a member of Obg-like family and present in archaea and fungi. They are characterized by a distinct glycine-rich motif immediately following the Walker B motif. The Ygr210 and YyaF/YchF subfamilies appear to form one major branch of the Obg-like family. Among eukaryotes, the Ygr210 subfamily is represented only in fungi. These fungal proteins form a tight cluster with their archaeal orthologs, which suggests the possibility of horizontal transfer from archaea to fungi.

>TIGR00484 EF-G translation elongation factor EF-G

Probab=99.64  E-value=6.2e-15  Score=121.83  Aligned_cols=115  Identities=18%  Similarity=0.120  Sum_probs=80.4

Q ss_pred             CceeEEEEEcCCCCCHHHHHHHHhhCCCCC-----CC--------------CCceeeeeeEEEEECCeEEEEEEEeCCCc
Q 036449            4 SRFIKCVTVGDGAVGKTCLLISYTSNTFPT-----DY--------------VPTVFDNFSANVVVNGSTVNLGLWDTAGQ   64 (197)
Q Consensus         4 ~~~~~i~v~G~~~~GKstli~~~~~~~~~~-----~~--------------~~~~~~~~~~~~~~~~~~~~~~i~D~~G~   64 (197)
                      .+.-+|+++|+.++|||||+++++...-..     ..              ..++.......+.+++  ..+.+|||||+
T Consensus         8 ~~irni~iiG~~~~GKsTL~~~ll~~~g~~~~~~~~~~g~~~~D~~~~e~~rgiti~~~~~~~~~~~--~~i~liDTPG~   85 (689)
T TIGR00484         8 NRFRNIGISAHIDAGKTTTTERILFYTGRIHKIGEVHDGAATMDWMEQEKERGITITSAATTVFWKG--HRINIIDTPGH   85 (689)
T ss_pred             ccccEEEEECCCCCCHHHHHHHHHHhCCCccccccccCCccccCCCHHHHhcCCCEecceEEEEECC--eEEEEEECCCC
Confidence            345699999999999999999997422110     00              0111111122233444  67889999999


Q ss_pred             cccccccccCcCCCcEEEEEEeCCCchhHHHHHHHHHHHHhhhCCCCCEEEEeeCCcccC
Q 036449           65 EDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLRD  124 (197)
Q Consensus        65 ~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~~~ivv~nK~D~~~  124 (197)
                      .+|.......+..+|++++|+|++++...+..  .++..+...  +.|+++++||+|+..
T Consensus        86 ~~~~~~~~~~l~~~D~~ilVvda~~g~~~~~~--~~~~~~~~~--~~p~ivviNK~D~~~  141 (689)
T TIGR00484        86 VDFTVEVERSLRVLDGAVAVLDAVGGVQPQSE--TVWRQANRY--EVPRIAFVNKMDKTG  141 (689)
T ss_pred             cchhHHHHHHHHHhCEEEEEEeCCCCCChhHH--HHHHHHHHc--CCCEEEEEECCCCCC
Confidence            98877777788999999999999987655543  333444444  689999999999975

After peptide bond formation, this elongation factor of bacteria and organelles catalyzes the translocation of the tRNA-mRNA complex, with its attached nascent polypeptide chain, from the A-site to the P-site of the ribosome. Every completed bacterial genome has at least one copy, but some species have additional EF-G-like proteins. The closest homolog to canonical (e.g. E. coli) EF-G in the spirochetes clusters as if it is derived from mitochondrial forms, while a more distant second copy is also present. Synechocystis PCC6803 has a few proteins more closely related to EF-G than to any other characterized protein. Two of these resemble E. coli EF-G more closely than does the best match from the spirochetes; it may be that both function as authentic EF-G.

>COG5256 TEF1 Translation elongation factor EF-1alpha (GTPase) [Translation, ribosomal structure and biogenesis]

Probab=99.64  E-value=2e-15  Score=113.56  Aligned_cols=160  Identities=16%  Similarity=0.141  Sum_probs=100.3

Q ss_pred             CCCceeEEEEEcCCCCCHHHHHHHHhhC--CCCC---------------C---------CCCce---eeee-eEEEEECC
Q 036449            2 SASRFIKCVTVGDGAVGKTCLLISYTSN--TFPT---------------D---------YVPTV---FDNF-SANVVVNG   51 (197)
Q Consensus         2 ~~~~~~~i~v~G~~~~GKstli~~~~~~--~~~~---------------~---------~~~~~---~~~~-~~~~~~~~   51 (197)
                      +.++.++++++|+..+|||||+-+|+..  .+..               +         ...+.   +.+. .....+..
T Consensus         3 ~~Kph~nl~~iGHVD~GKSTl~GrLly~~G~id~~tmeK~~~ea~~~gK~sf~fawvlD~tkeERerGvTi~~~~~~fet   82 (428)
T COG5256           3 SEKPHLNLVFIGHVDAGKSTLVGRLLYDLGEIDKRTMEKLEKEAKELGKESFKFAWVLDKTKEERERGVTIDVAHSKFET   82 (428)
T ss_pred             CCCCceEEEEEcCCCCCchhhhhhhHHHhCCCCHHHHHHHHHHHHhcCCCceEEEEEecCChhHHhcceEEEEEEEEeec
Confidence            4578899999999999999999877632  1111               0         00000   0011 11122333


Q ss_pred             eEEEEEEEeCCCccccccccccCcCCCcEEEEEEeCCCchh---HH--HHHHHHHHHHhhhCCCCCEEEEeeCCcccCCc
Q 036449           52 STVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKAS---YE--NVSKKWIPELKHYAPGVPIILVGTKLDLRDDK  126 (197)
Q Consensus        52 ~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s---~~--~~~~~~~~~i~~~~~~~~~ivv~nK~D~~~~~  126 (197)
                      ..+.++++|+||+..|-........+||+.|+|+|..+.+-   |.  .. .+-...+.....-..+|++.||+|+.+++
T Consensus        83 ~k~~~tIiDaPGHrdFvknmItGasqAD~aVLVV~a~~~efE~g~~~~gQ-trEH~~La~tlGi~~lIVavNKMD~v~wd  161 (428)
T COG5256          83 DKYNFTIIDAPGHRDFVKNMITGASQADVAVLVVDARDGEFEAGFGVGGQ-TREHAFLARTLGIKQLIVAVNKMDLVSWD  161 (428)
T ss_pred             CCceEEEeeCCchHHHHHHhhcchhhccEEEEEEECCCCccccccccCCc-hhHHHHHHHhcCCceEEEEEEcccccccC
Confidence            45679999999999999888888999999999999988731   10  00 01111122222234678899999998765


Q ss_pred             ccccCCCCCCcccHHHHHHHHHHhCCC----ceEEeccCCCCCHHH
Q 036449          127 QFFIDHPGAVPISTAQGEELRKLIGAP----AYIECSSKTQQNVKA  168 (197)
Q Consensus       127 ~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~sa~~~~~i~~  168 (197)
                      +      ..++.-..+...+.+..|..    +|+++|+.+|+|+.+
T Consensus       162 e------~rf~ei~~~v~~l~k~~G~~~~~v~FIPiSg~~G~Nl~~  201 (428)
T COG5256         162 E------ERFEEIVSEVSKLLKMVGYNPKDVPFIPISGFKGDNLTK  201 (428)
T ss_pred             H------HHHHHHHHHHHHHHHHcCCCccCCeEEecccccCCcccc
Confidence            3      11111223333455555543    599999999998764

>KOG0077 consensus Vesicle coat complex COPII, GTPase subunit SAR1 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.63  E-value=9.8e-16  Score=101.13  Aligned_cols=156  Identities=19%  Similarity=0.262  Sum_probs=110.8

Q ss_pred             ceeEEEEEcCCCCCHHHHHHHHhhCCCCCCCCCceeeeeeEEEEECCeEEEEEEEeCCCccccccccccCcCCCcEEEEE
Q 036449            5 RFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILA   84 (197)
Q Consensus         5 ~~~~i~v~G~~~~GKstli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v   84 (197)
                      +.=|++++|-.++|||||++.+....... +.||.-.. +....+.+  +.++.+|.+|+..-+..|..++..+|++++.
T Consensus        19 K~gKllFlGLDNAGKTTLLHMLKdDrl~q-hvPTlHPT-SE~l~Ig~--m~ftt~DLGGH~qArr~wkdyf~~v~~iv~l   94 (193)
T KOG0077|consen   19 KFGKLLFLGLDNAGKTTLLHMLKDDRLGQ-HVPTLHPT-SEELSIGG--MTFTTFDLGGHLQARRVWKDYFPQVDAIVYL   94 (193)
T ss_pred             cCceEEEEeecCCchhhHHHHHccccccc-cCCCcCCC-hHHheecC--ceEEEEccccHHHHHHHHHHHHhhhceeEee
Confidence            45689999999999999999988776533 34444211 12334455  7888999999999999999999999999999


Q ss_pred             EeCCCchhHHHHHHHHHHHHhhhC-CCCCEEEEeeCCcccCCcccccCCCCCCcccHHHHHHHHHHh------C------
Q 036449           85 FSLISKASYENVSKKWIPELKHYA-PGVPIILVGTKLDLRDDKQFFIDHPGAVPISTAQGEELRKLI------G------  151 (197)
Q Consensus        85 ~d~~~~~s~~~~~~~~~~~i~~~~-~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~------  151 (197)
                      +|+-|.+.+.+....+-..+.... .+.|+++.+||+|.+...            ++++.+....-+      +      
T Consensus        95 vda~d~er~~es~~eld~ll~~e~la~vp~lilgnKId~p~a~------------se~~l~~~l~l~~~t~~~~~v~~~~  162 (193)
T KOG0077|consen   95 VDAYDQERFAESKKELDALLSDESLATVPFLILGNKIDIPYAA------------SEDELRFHLGLSNFTTGKGKVNLTD  162 (193)
T ss_pred             eehhhHHHhHHHHHHHHHHHhHHHHhcCcceeecccccCCCcc------------cHHHHHHHHHHHHHhcccccccccC
Confidence            999999999988555544444433 689999999999997642            222222111111      1      


Q ss_pred             --C--CceEEeccCCCCCHHHHHHHHHHH
Q 036449          152 --A--PAYIECSSKTQQNVKAVFDAAIRV  176 (197)
Q Consensus       152 --~--~~~~~~sa~~~~~i~~l~~~i~~~  176 (197)
                        .  ...+-||...+.+.-+.|.|+.+.
T Consensus       163 ~~~rp~evfmcsi~~~~gy~e~fkwl~qy  191 (193)
T KOG0077|consen  163 SNVRPLEVFMCSIVRKMGYGEGFKWLSQY  191 (193)
T ss_pred             CCCCeEEEEEEEEEccCccceeeeehhhh
Confidence              1  123567888788877777777654

>TIGR00503 prfC peptide chain release factor 3

Probab=99.62  E-value=7.4e-15  Score=117.21  Aligned_cols=117  Identities=15%  Similarity=0.109  Sum_probs=78.2

Q ss_pred             CceeEEEEEcCCCCCHHHHHHHHhhC--CCCC------C--CCCce----------eeee-eEEEEECCeEEEEEEEeCC
Q 036449            4 SRFIKCVTVGDGAVGKTCLLISYTSN--TFPT------D--YVPTV----------FDNF-SANVVVNGSTVNLGLWDTA   62 (197)
Q Consensus         4 ~~~~~i~v~G~~~~GKstli~~~~~~--~~~~------~--~~~~~----------~~~~-~~~~~~~~~~~~~~i~D~~   62 (197)
                      .+.-+|+++|++++|||||+.+++..  ....      .  ...+.          +..+ .....++...+.+.+||||
T Consensus         9 ~~~RniaiiGh~~aGKTTL~e~Ll~~~g~i~~~g~v~~~g~~~~t~~D~~~~E~~rgisi~~~~~~~~~~~~~inliDTP   88 (527)
T TIGR00503         9 DKRRTFAIISHPDAGKTTITEKVLLYGGAIQTAGAVKGRGSQRHAKSDWMEMEKQRGISITTSVMQFPYRDCLVNLLDTP   88 (527)
T ss_pred             ccCCEEEEEcCCCCCHHHHHHHHHHhCCCccccceeccccccccccCCCCHHHHhcCCcEEEEEEEEeeCCeEEEEEECC
Confidence            45679999999999999999998632  1110      0  00011          1111 1112233445788899999


Q ss_pred             CccccccccccCcCCCcEEEEEEeCCCchhHHHHHHHHHHHHhhhCCCCCEEEEeeCCcccC
Q 036449           63 GQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLRD  124 (197)
Q Consensus        63 G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~~~ivv~nK~D~~~  124 (197)
                      |+..|.......+..+|++|+|+|.++.....  ...++......  +.|+++++||+|+..
T Consensus        89 G~~df~~~~~~~l~~aD~aIlVvDa~~gv~~~--t~~l~~~~~~~--~~PiivviNKiD~~~  146 (527)
T TIGR00503        89 GHEDFSEDTYRTLTAVDNCLMVIDAAKGVETR--TRKLMEVTRLR--DTPIFTFMNKLDRDI  146 (527)
T ss_pred             ChhhHHHHHHHHHHhCCEEEEEEECCCCCCHH--HHHHHHHHHhc--CCCEEEEEECccccC
Confidence            99888776666788999999999998753222  23444444433  789999999999864

This translation releasing factor, RF-3 (prfC) was originally described as stop codon-independent, in contrast to peptide chain release factor 1 (RF-1, prfA) and RF-2 (prfB). RF-1 and RF-2 are closely related to each other, while RF-3 is similar to elongation factors EF-Tu and EF-G; RF-1 is active at UAA and UAG and RF-2 is active at UAA and UGA. More recently, RF-3 was shown to be active primarily at UGA stop codons in E. coli. All bacteria and organelles have RF-1. The Mycoplasmas and organelles, which translate UGA as Trp rather than as a stop codon, lack RF-2. RF-3, in contrast, seems to be rare among bacteria and is found so far only in Escherichia coli and some other gamma subdivision Proteobacteria, in Synechocystis PCC6803, and in Staphylococcus aureus.

>COG4917 EutP Ethanolamine utilization protein [Amino acid transport and metabolism]

Probab=99.61  E-value=1.4e-15  Score=95.86  Aligned_cols=137  Identities=24%  Similarity=0.174  Sum_probs=97.7

Q ss_pred             EEEEEcCCCCCHHHHHHHHhhCCCCCCCCCceeeeeeEEEEECCeEEEEEEEeCCCcc----ccccccccCcCCCcEEEE
Q 036449            8 KCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQE----DYNRLRPLSYRGADVFIL   83 (197)
Q Consensus         8 ~i~v~G~~~~GKstli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~----~~~~~~~~~~~~~~~~i~   83 (197)
                      ||+++|..|+|||||.+++.+...-..  .|.      -+.+..+ .   .+||||.-    .+.+........+|.+++
T Consensus         3 ri~~vG~~gcGKTtL~q~L~G~~~lyk--KTQ------Ave~~d~-~---~IDTPGEy~~~~~~Y~aL~tt~~dadvi~~   70 (148)
T COG4917           3 RIAFVGQVGCGKTTLFQSLYGNDTLYK--KTQ------AVEFNDK-G---DIDTPGEYFEHPRWYHALITTLQDADVIIY   70 (148)
T ss_pred             eeEEecccccCchhHHHHhhcchhhhc--ccc------eeeccCc-c---ccCCchhhhhhhHHHHHHHHHhhccceeee
Confidence            799999999999999999988653221  111      1112111 1   58999943    333333445678999999


Q ss_pred             EEeCCCchhHHHHHHHHHHHHhhhCCCCCEEEEeeCCcccCCcccccCCCCCCcccHHHHHHHHHHhCCCceEEeccCCC
Q 036449           84 AFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQ  163 (197)
Q Consensus        84 v~d~~~~~s~~~~~~~~~~~i~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~  163 (197)
                      |-.++++++.-..  .    +.... ..|+|-|++|.|+.+.            .+.+..+++..+-|..++|++|+.++
T Consensus        71 v~~and~~s~f~p--~----f~~~~-~k~vIgvVTK~DLaed------------~dI~~~~~~L~eaGa~~IF~~s~~d~  131 (148)
T COG4917          71 VHAANDPESRFPP--G----FLDIG-VKKVIGVVTKADLAED------------ADISLVKRWLREAGAEPIFETSAVDN  131 (148)
T ss_pred             eecccCccccCCc--c----ccccc-ccceEEEEecccccch------------HhHHHHHHHHHHcCCcceEEEeccCc
Confidence            9999998654322  1    22222 3569999999999864            34567788889999989999999999


Q ss_pred             CCHHHHHHHHHH
Q 036449          164 QNVKAVFDAAIR  175 (197)
Q Consensus       164 ~~i~~l~~~i~~  175 (197)
                      .|+++++..|..
T Consensus       132 ~gv~~l~~~L~~  143 (148)
T COG4917         132 QGVEELVDYLAS  143 (148)
T ss_pred             ccHHHHHHHHHh
Confidence            999999998764

>COG0536 Obg Predicted GTPase [General function prediction only]

Probab=99.61  E-value=1.5e-14  Score=106.39  Aligned_cols=161  Identities=19%  Similarity=0.167  Sum_probs=105.8

Q ss_pred             EEEEcCCCCCHHHHHHHHhhCCC-CCCCCCceeeeeeEEEEECCeEEEEEEEeCCCccccc-------cccccCcCCCcE
Q 036449            9 CVTVGDGAVGKTCLLISYTSNTF-PTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQEDYN-------RLRPLSYRGADV   80 (197)
Q Consensus         9 i~v~G~~~~GKstli~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~-------~~~~~~~~~~~~   80 (197)
                      |-++|-|++|||||++.+..-+. ..+|+.|+..-.-..+.+. ..-.+.+-|.||.-+=.       ......++.+.+
T Consensus       162 VGLVG~PNaGKSTlls~vS~AkPKIadYpFTTL~PnLGvV~~~-~~~sfv~ADIPGLIEGAs~G~GLG~~FLrHIERt~v  240 (369)
T COG0536         162 VGLVGLPNAGKSTLLSAVSAAKPKIADYPFTTLVPNLGVVRVD-GGESFVVADIPGLIEGASEGVGLGLRFLRHIERTRV  240 (369)
T ss_pred             cccccCCCCcHHHHHHHHhhcCCcccCCccccccCcccEEEec-CCCcEEEecCcccccccccCCCccHHHHHHHHhhhe
Confidence            67899999999999999986543 5677777743332233332 22357799999942211       111123456789


Q ss_pred             EEEEEeCCCchh---HHHHHHHHHHHHhhhC---CCCCEEEEeeCCcccCCcccccCCCCCCcccHHHHHHHHHHhCCCc
Q 036449           81 FILAFSLISKAS---YENVSKKWIPELKHYA---PGVPIILVGTKLDLRDDKQFFIDHPGAVPISTAQGEELRKLIGAPA  154 (197)
Q Consensus        81 ~i~v~d~~~~~s---~~~~~~~~~~~i~~~~---~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  154 (197)
                      ++.|+|++..+.   .++. ..+...+..+.   .+.|.+||+||+|+....+          ........+.+..+...
T Consensus       241 L~hviD~s~~~~~dp~~~~-~~i~~EL~~Y~~~L~~K~~ivv~NKiD~~~~~e----------~~~~~~~~l~~~~~~~~  309 (369)
T COG0536         241 LLHVIDLSPIDGRDPIEDY-QTIRNELEKYSPKLAEKPRIVVLNKIDLPLDEE----------ELEELKKALAEALGWEV  309 (369)
T ss_pred             eEEEEecCcccCCCHHHHH-HHHHHHHHHhhHHhccCceEEEEeccCCCcCHH----------HHHHHHHHHHHhcCCCc
Confidence            999999986543   4443 45555565554   4889999999999654322          22233344444445433


Q ss_pred             eEEeccCCCCCHHHHHHHHHHHHcCCC
Q 036449          155 YIECSSKTQQNVKAVFDAAIRVVLQPP  181 (197)
Q Consensus       155 ~~~~sa~~~~~i~~l~~~i~~~~~~~~  181 (197)
                      ++.+||.++.|++++...+.+.+....
T Consensus       310 ~~~ISa~t~~g~~~L~~~~~~~l~~~~  336 (369)
T COG0536         310 FYLISALTREGLDELLRALAELLEETK  336 (369)
T ss_pred             ceeeehhcccCHHHHHHHHHHHHHHhh
Confidence            333999999999999999999887765

>PRK12739 elongation factor G; Reviewed

Probab=99.61  E-value=2.7e-14  Score=118.09  Aligned_cols=115  Identities=18%  Similarity=0.139  Sum_probs=80.2

Q ss_pred             CceeEEEEEcCCCCCHHHHHHHHhhCCCC--------C-----------CCCCceeeeeeEEEEECCeEEEEEEEeCCCc
Q 036449            4 SRFIKCVTVGDGAVGKTCLLISYTSNTFP--------T-----------DYVPTVFDNFSANVVVNGSTVNLGLWDTAGQ   64 (197)
Q Consensus         4 ~~~~~i~v~G~~~~GKstli~~~~~~~~~--------~-----------~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~   64 (197)
                      .+..+|+++|+.++|||||+++++...-.        .           .....+.......+.+++  .++.++||||+
T Consensus         6 ~~irni~iiGh~~~GKsTL~~~ll~~~g~~~~~~~v~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~--~~i~liDTPG~   83 (691)
T PRK12739          6 EKTRNIGIMAHIDAGKTTTTERILYYTGKSHKIGEVHDGAATMDWMEQEQERGITITSAATTCFWKG--HRINIIDTPGH   83 (691)
T ss_pred             cCeeEEEEECCCCCCHHHHHHHHHHhCCCccccccccCCccccCCChhHhhcCCCccceeEEEEECC--EEEEEEcCCCH
Confidence            46778999999999999999999752110        0           001111111122233444  67889999999


Q ss_pred             cccccccccCcCCCcEEEEEEeCCCchhHHHHHHHHHHHHhhhCCCCCEEEEeeCCcccC
Q 036449           65 EDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLRD  124 (197)
Q Consensus        65 ~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~~~ivv~nK~D~~~  124 (197)
                      ..|...+...+..+|++|+|+|++++...+..  ..+..+...  +.|+++++||+|+..
T Consensus        84 ~~f~~e~~~al~~~D~~ilVvDa~~g~~~qt~--~i~~~~~~~--~~p~iv~iNK~D~~~  139 (691)
T PRK12739         84 VDFTIEVERSLRVLDGAVAVFDAVSGVEPQSE--TVWRQADKY--GVPRIVFVNKMDRIG  139 (691)
T ss_pred             HHHHHHHHHHHHHhCeEEEEEeCCCCCCHHHH--HHHHHHHHc--CCCEEEEEECCCCCC
Confidence            88877777788899999999999887544433  334444444  689999999999874

>PRK09866 hypothetical protein; Provisional

Probab=99.61  E-value=2.9e-14  Score=113.42  Aligned_cols=110  Identities=15%  Similarity=0.115  Sum_probs=74.0

Q ss_pred             EEEEEeCCCcccc-----ccccccCcCCCcEEEEEEeCCCchhHHHHHHHHHHHHhhhCCCCCEEEEeeCCcccCCcccc
Q 036449           55 NLGLWDTAGQEDY-----NRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLRDDKQFF  129 (197)
Q Consensus        55 ~~~i~D~~G~~~~-----~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~~~ivv~nK~D~~~~~~~~  129 (197)
                      ++.|.||||....     .......+..+|+++||+|.++..+..+.  .+...+.....+.|+++|+||+|+.....  
T Consensus       231 QIIFVDTPGIhk~~~~~L~k~M~eqL~eADvVLFVVDat~~~s~~De--eIlk~Lkk~~K~~PVILVVNKIDl~dree--  306 (741)
T PRK09866        231 QLTLLDTPGPNEAGQPHLQKMLNQQLARASAVLAVLDYTQLKSISDE--EVREAILAVGQSVPLYVLVNKFDQQDRNS--  306 (741)
T ss_pred             CEEEEECCCCCCccchHHHHHHHHHHhhCCEEEEEEeCCCCCChhHH--HHHHHHHhcCCCCCEEEEEEcccCCCccc--
Confidence            4678999996432     22233468899999999999876554442  44555555433369999999999853221  


Q ss_pred             cCCCCCCcccHHHHHHHHHH------hCCCceEEeccCCCCCHHHHHHHHHHH
Q 036449          130 IDHPGAVPISTAQGEELRKL------IGAPAYIECSSKTQQNVKAVFDAAIRV  176 (197)
Q Consensus       130 ~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~sa~~~~~i~~l~~~i~~~  176 (197)
                              ...+....+...      .....++++||+.|.|++.+++.|.+.
T Consensus       307 --------ddkE~Lle~V~~~L~q~~i~f~eIfPVSAlkG~nid~LLdeI~~~  351 (741)
T PRK09866        307 --------DDADQVRALISGTLMKGCITPQQIFPVSSMWGYLANRARHELANN  351 (741)
T ss_pred             --------chHHHHHHHHHHHHHhcCCCCceEEEEeCCCCCCHHHHHHHHHhC
Confidence                    123333333221      123368999999999999999999873

>PRK14845 translation initiation factor IF-2; Provisional

Probab=99.60  E-value=2.5e-14  Score=120.66  Aligned_cols=158  Identities=19%  Similarity=0.222  Sum_probs=96.1

Q ss_pred             CCHHHHHHHHhhCCCCCCCCCceeeeeeEE-EEECC-e---------------EEEEEEEeCCCccccccccccCcCCCc
Q 036449           17 VGKTCLLISYTSNTFPTDYVPTVFDNFSAN-VVVNG-S---------------TVNLGLWDTAGQEDYNRLRPLSYRGAD   79 (197)
Q Consensus        17 ~GKstli~~~~~~~~~~~~~~~~~~~~~~~-~~~~~-~---------------~~~~~i~D~~G~~~~~~~~~~~~~~~~   79 (197)
                      ++||||+.++.+.........-+....... +..+. .               .-.+.||||||++.|..+....+..+|
T Consensus       472 ~~KTtLLD~iR~t~v~~~EaGGITQ~IGa~~v~~~~~~~~~~~~~~~~~~~~~~p~i~fiDTPGhe~F~~lr~~g~~~aD  551 (1049)
T PRK14845        472 VHNTTLLDKIRKTRVAKKEAGGITQHIGATEIPIDVIKKICGPLLKLLKAEIKIPGLLFIDTPGHEAFTSLRKRGGSLAD  551 (1049)
T ss_pred             cccccHHHHHhCCCcccccCCCceeccceEEEEecccccccccccccccccCCcCcEEEEECCCcHHHHHHHHhhcccCC
Confidence            459999999998877665555443333222 11211 0               012789999999999888777888899


Q ss_pred             EEEEEEeCCCchhHHHHHHHHHHHHhhhCCCCCEEEEeeCCcccCCcccccCCCCCCccc---HHHHHH-----------
Q 036449           80 VFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPIS---TAQGEE-----------  145 (197)
Q Consensus        80 ~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~---~~~~~~-----------  145 (197)
                      ++++|+|++++-.-+..  ..+..+...  +.|+++|+||+|+.+........+....+.   ....++           
T Consensus       552 ivlLVVDa~~Gi~~qT~--e~I~~lk~~--~iPiIVViNKiDL~~~~~~~~~~~~~~~~~~q~~~~~~el~~~l~~v~~~  627 (1049)
T PRK14845        552 LAVLVVDINEGFKPQTI--EAINILRQY--KTPFVVAANKIDLIPGWNISEDEPFLLNFNEQDQHALTELEIKLYELIGK  627 (1049)
T ss_pred             EEEEEEECcccCCHhHH--HHHHHHHHc--CCCEEEEEECCCCccccccccchhhhhhhhhhHHHHHHHHHHHHHHHhhH
Confidence            99999999874222221  222333333  689999999999964321000000000000   000000           


Q ss_pred             HH-------------HHhCCCceEEeccCCCCCHHHHHHHHHHHHc
Q 036449          146 LR-------------KLIGAPAYIECSSKTQQNVKAVFDAAIRVVL  178 (197)
Q Consensus       146 ~~-------------~~~~~~~~~~~sa~~~~~i~~l~~~i~~~~~  178 (197)
                      ++             +-.+..+++++||++|.|+++|+..|.....
T Consensus       628 L~~~G~~~e~~~~~~d~~~~v~iVpVSA~tGeGId~Ll~~l~~l~~  673 (1049)
T PRK14845        628 LYELGFDADRFDRVQDFTRTVAIVPVSAKTGEGIPELLMMVAGLAQ  673 (1049)
T ss_pred             HHhcCcchhhhhhhhhcCCCceEEEEEcCCCCCHHHHHHHHHHhhH
Confidence            11             1123447899999999999999998875443

>KOG0090 consensus Signal recognition particle receptor, beta subunit (small G protein superfamily) [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.59  E-value=4.9e-15  Score=101.99  Aligned_cols=166  Identities=15%  Similarity=0.101  Sum_probs=104.1

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHhhCCCCCCCCCceeeeeeEEEEECCeEEEEEEEeCCCccccccccccCcC---CCcEEE
Q 036449            6 FIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYR---GADVFI   82 (197)
Q Consensus         6 ~~~i~v~G~~~~GKstli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~---~~~~~i   82 (197)
                      .-.|+++|+.+||||+|+-.+..+.....+++..  .......+....  ..++|.|||++.+.-...++.   .+-+++
T Consensus        38 ~~~Vll~Gl~dSGKT~LF~qL~~gs~~~TvtSie--pn~a~~r~gs~~--~~LVD~PGH~rlR~kl~e~~~~~~~akaiV  113 (238)
T KOG0090|consen   38 QNAVLLVGLSDSGKTSLFTQLITGSHRGTVTSIE--PNEATYRLGSEN--VTLVDLPGHSRLRRKLLEYLKHNYSAKAIV  113 (238)
T ss_pred             CCcEEEEecCCCCceeeeeehhcCCccCeeeeec--cceeeEeecCcc--eEEEeCCCcHHHHHHHHHHccccccceeEE
Confidence            3479999999999999999999885444322222  222233333322  679999999988765555444   688999


Q ss_pred             EEEeCC-CchhHHHHHHHHHHHHhhh---CCCCCEEEEeeCCcccCCccc--c------------cCCC----------C
Q 036449           83 LAFSLI-SKASYENVSKKWIPELKHY---APGVPIILVGTKLDLRDDKQF--F------------IDHP----------G  134 (197)
Q Consensus        83 ~v~d~~-~~~s~~~~~~~~~~~i~~~---~~~~~~ivv~nK~D~~~~~~~--~------------~~~~----------~  134 (197)
                      ||+|.. ......++...++..+...   ...+|+++++||.|+.-....  +            ....          .
T Consensus       114 FVVDSa~f~k~vrdvaefLydil~~~~~~~~~~~vLIaCNKqDl~tAkt~~~Ir~~LEkEi~~lr~sRsa~~~~~~ed~~  193 (238)
T KOG0090|consen  114 FVVDSATFLKNVRDVAEFLYDILLDSRVKKNKPPVLIACNKQDLFTAKTAEKIRQQLEKEIHKLRESRSALRSISDEDIA  193 (238)
T ss_pred             EEEeccccchhhHHHHHHHHHHHHhhccccCCCCEEEEecchhhhhcCcHHHHHHHHHHHHHHHHHHHhhhhcccccccc
Confidence            999984 3444556656667776655   257899999999998632211  0            0000          0


Q ss_pred             CCcccHHHH--HHHHHHh-CCCceEEeccCCCCCHHHHHHHHHHH
Q 036449          135 AVPISTAQG--EELRKLI-GAPAYIECSSKTQQNVKAVFDAAIRV  176 (197)
Q Consensus       135 ~~~~~~~~~--~~~~~~~-~~~~~~~~sa~~~~~i~~l~~~i~~~  176 (197)
                      .....-.++  .+|+.-. ....|.++|++++ +++++-+||.+.
T Consensus       194 ~~~tlg~~g~dF~fs~l~~~~V~F~e~S~~~~-~i~~~~~wi~~~  237 (238)
T KOG0090|consen  194 KDFTLGKEGEDFKFSHLEDQKVTFAEASAKTG-EIDQWESWIREA  237 (238)
T ss_pred             ccccccccccccchhhcccceeEEeecccCcC-ChHHHHHHHHHh
Confidence            000111111  1222211 1236889999988 899999998765

>cd00066 G-alpha G protein alpha subunit

Probab=99.59  E-value=4.3e-14  Score=106.68  Aligned_cols=127  Identities=18%  Similarity=0.205  Sum_probs=85.7

Q ss_pred             EEEEEEEeCCCccccccccccCcCCCcEEEEEEeCCCc----------hhHHHHHHHHHHHHhhhC-CCCCEEEEeeCCc
Q 036449           53 TVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISK----------ASYENVSKKWIPELKHYA-PGVPIILVGTKLD  121 (197)
Q Consensus        53 ~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~----------~s~~~~~~~~~~~i~~~~-~~~~~ivv~nK~D  121 (197)
                      .+.+.+||++|+...+..|..++.+++++|+|+|+++.          ..+.+....+-..+.... .+.|+++++||.|
T Consensus       160 ~~~~~~~DvgGq~~~R~kW~~~f~~v~~iifvv~lsd~d~~~~e~~~~nrl~esl~~f~~i~~~~~~~~~pill~~NK~D  239 (317)
T cd00066         160 NLKFRMFDVGGQRSERKKWIHCFEDVTAIIFVVALSEYDQVLFEDESTNRMQESLNLFDSICNSRWFANTSIILFLNKKD  239 (317)
T ss_pred             ceEEEEECCCCCcccchhHHHHhCCCCEEEEEEEchhcccccccCCcchHHHHHHHHHHHHHhCccccCCCEEEEccChH
Confidence            46788999999999999999999999999999999874          345555344444444433 6899999999999


Q ss_pred             ccCCcccc-------cCCCCCCcccHHHHHHHHH-----Hh---CC-CceEEeccCCCCCHHHHHHHHHHHHcCC
Q 036449          122 LRDDKQFF-------IDHPGAVPISTAQGEELRK-----LI---GA-PAYIECSSKTQQNVKAVFDAAIRVVLQP  180 (197)
Q Consensus       122 ~~~~~~~~-------~~~~~~~~~~~~~~~~~~~-----~~---~~-~~~~~~sa~~~~~i~~l~~~i~~~~~~~  180 (197)
                      +..+.-..       .+..+. ..+.+.+..+..     ..   +. .....++|.+..++..+|+.+...+...
T Consensus       240 ~f~~ki~~~~l~~~fp~y~g~-~~~~~~~~~~i~~~F~~~~~~~~~~~~~~~t~a~Dt~~i~~vf~~v~~~i~~~  313 (317)
T cd00066         240 LFEEKIKKSPLTDYFPDYTGP-PNDYEEAAKFIRKKFLDLNRNPNKEIYPHFTCATDTENIRFVFDAVKDIILQN  313 (317)
T ss_pred             HHHHhhcCCCccccCCCCCCC-CCCHHHHHHHHHHHHHHhhcCCCCeEEEEeccccchHHHHHHHHHHHHHHHHH
Confidence            86543111       111110 123333333222     21   11 1235588999999999999988877654

The alpha subunit of G proteins contains the guanine nucleotide binding site. The heterotrimeric GNP-binding proteins are signal transducers that communicate signals from many hormones, neurotransmitters, chemokines, and autocrine and paracrine factors. Extracellular signals are received by receptors, which activate the G proteins, which in turn route the signals to several distinct intracellular signaling pathways. The alpha subunit of G proteins is a weak GTPase. In the resting state, heterotrimeric G proteins are associated at the cytosolic face of the plasma membrane and the alpha subunit binds to GDP. Upon activation by a receptor GDP is replaced with GTP, and the G-alpha/GTP complex dissociates from the beta and gamma subunits. This results in activation of downstream signaling pathways, such as cAMP synthesis by adenylyl cyclase, which is terminated when GTP is hydrolized and the heterotrimers reconstitute.

>KOG1191 consensus Mitochondrial GTPase [Translation, ribosomal structure and biogenesis]

Probab=99.57  E-value=2.2e-14  Score=109.93  Aligned_cols=168  Identities=24%  Similarity=0.237  Sum_probs=111.2

Q ss_pred             ceeEEEEEcCCCCCHHHHHHHHhhCC--CCCCCCCceeeeeeEEEEECCeEEEEEEEeCCCccccc---------ccccc
Q 036449            5 RFIKCVTVGDGAVGKTCLLISYTSNT--FPTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQEDYN---------RLRPL   73 (197)
Q Consensus         5 ~~~~i~v~G~~~~GKstli~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~---------~~~~~   73 (197)
                      ..++|+++|+|++|||||+|.|.+..  .....+.|+.+-....+.++|  +.+.+.||+|..+-.         .....
T Consensus       267 ~gl~iaIvGrPNvGKSSLlNaL~~~drsIVSpv~GTTRDaiea~v~~~G--~~v~L~DTAGiRe~~~~~iE~~gI~rA~k  344 (531)
T KOG1191|consen  267 SGLQIAIVGRPNVGKSSLLNALSREDRSIVSPVPGTTRDAIEAQVTVNG--VPVRLSDTAGIREESNDGIEALGIERARK  344 (531)
T ss_pred             cCCeEEEEcCCCCCHHHHHHHHhcCCceEeCCCCCcchhhheeEeecCC--eEEEEEeccccccccCChhHHHhHHHHHH
Confidence            45899999999999999999999765  456778888888888888888  566799999965411         11123


Q ss_pred             CcCCCcEEEEEEeC--CCchhHHHHHHHHHHHHhhhC-------CCCCEEEEeeCCcccCCcccccCCCCCCcccHHHHH
Q 036449           74 SYRGADVFILAFSL--ISKASYENVSKKWIPELKHYA-------PGVPIILVGTKLDLRDDKQFFIDHPGAVPISTAQGE  144 (197)
Q Consensus        74 ~~~~~~~~i~v~d~--~~~~s~~~~~~~~~~~i~~~~-------~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~  144 (197)
                      .+..+|++++|+|+  ++-++-..+ ...+.......       ...+++++.||.|+...-.    +.....+....+ 
T Consensus       345 ~~~~advi~~vvda~~~~t~sd~~i-~~~l~~~~~g~~~~~~~~~~~~~i~~~nk~D~~s~~~----~~~~~~~~~~~~-  418 (531)
T KOG1191|consen  345 RIERADVILLVVDAEESDTESDLKI-ARILETEGVGLVVIVNKMEKQRIILVANKSDLVSKIP----EMTKIPVVYPSA-  418 (531)
T ss_pred             HHhhcCEEEEEecccccccccchHH-HHHHHHhccceEEEeccccccceEEEechhhccCccc----cccCCceecccc-
Confidence            46679999999999  333333333 23333332222       1378999999999976411    000000111111 


Q ss_pred             HHHHHhCCCceEEeccCCCCCHHHHHHHHHHHHcCCCc
Q 036449          145 ELRKLIGAPAYIECSSKTQQNVKAVFDAAIRVVLQPPK  182 (197)
Q Consensus       145 ~~~~~~~~~~~~~~sa~~~~~i~~l~~~i~~~~~~~~~  182 (197)
                      ...  -......++|+++++|++.|.+.+.+.+.....
T Consensus       419 ~~~--~~~~i~~~vs~~tkeg~~~L~~all~~~~~~~~  454 (531)
T KOG1191|consen  419 EGR--SVFPIVVEVSCTTKEGCERLSTALLNIVERLVV  454 (531)
T ss_pred             ccC--cccceEEEeeechhhhHHHHHHHHHHHHHHhhc
Confidence            111  122245669999999999999999987765433

>KOG1144 consensus Translation initiation factor 5B (eIF-5B) [Translation, ribosomal structure and biogenesis]

Probab=99.57  E-value=1.2e-14  Score=115.83  Aligned_cols=188  Identities=16%  Similarity=0.184  Sum_probs=120.2

Q ss_pred             ceeEEEEEcCCCCCHHHHHHHHhhCCCCCCCCCceeeeeeEEEEE-------------CC----eEEEEEEEeCCCcccc
Q 036449            5 RFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVV-------------NG----STVNLGLWDTAGQEDY   67 (197)
Q Consensus         5 ~~~~i~v~G~~~~GKstli~~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~----~~~~~~i~D~~G~~~~   67 (197)
                      +..-||++|+..+|||-|+..+.+........+.+...+..++.-             .+    ..--+.++||||++.|
T Consensus       474 RSPIcCilGHVDTGKTKlld~ir~tNVqegeaggitqqIgAt~fp~~ni~e~tk~~~~~~K~~~kvPg~lvIdtpghEsF  553 (1064)
T KOG1144|consen  474 RSPICCILGHVDTGKTKLLDKIRGTNVQEGEAGGITQQIGATYFPAENIREKTKELKKDAKKRLKVPGLLVIDTPGHESF  553 (1064)
T ss_pred             CCceEEEeecccccchHHHHHhhccccccccccceeeeccccccchHHHHHHHHHHHhhhhhhcCCCeeEEecCCCchhh
Confidence            345699999999999999999988666554444442222222110             00    1122669999999999


Q ss_pred             ccccccCcCCCcEEEEEEeCCCchhHHHHHHHHHHHHhhhCCCCCEEEEeeCCcccCCcccccCCCCC---CcccH----
Q 036449           68 NRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLRDDKQFFIDHPGA---VPIST----  140 (197)
Q Consensus        68 ~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~---~~~~~----  140 (197)
                      ..++......||++|+|+|+..+...+.+  .-+..++.+  +.|+||++||+|...........+-.   .....    
T Consensus       554 tnlRsrgsslC~~aIlvvdImhGlepqti--ESi~lLR~r--ktpFivALNKiDRLYgwk~~p~~~i~~~lkkQ~k~v~~  629 (1064)
T KOG1144|consen  554 TNLRSRGSSLCDLAILVVDIMHGLEPQTI--ESINLLRMR--KTPFIVALNKIDRLYGWKSCPNAPIVEALKKQKKDVQN  629 (1064)
T ss_pred             hhhhhccccccceEEEEeehhccCCcchh--HHHHHHHhc--CCCeEEeehhhhhhcccccCCCchHHHHHHHhhHHHHH
Confidence            99999999999999999999987554444  334566666  89999999999987543321110000   00000    


Q ss_pred             -------HHHHHHHHH-hC------------CCceEEeccCCCCCHHHHHHHHHHHHcCCCchhhhhhccccccccC
Q 036449          141 -------AQGEELRKL-IG------------APAYIECSSKTQQNVKAVFDAAIRVVLQPPKTKKKKNKAQKACSIL  197 (197)
Q Consensus       141 -------~~~~~~~~~-~~------------~~~~~~~sa~~~~~i~~l~~~i~~~~~~~~~~~~~~~~~~~~c~~~  197 (197)
                             ....+|+.+ ++            .+.++++||.+|+||-+|+.+|+++......++.. -...-.|+||
T Consensus       630 EF~~R~~~ii~efaEQgLN~~LyykNk~~~~~vsiVPTSA~sGeGipdLl~llv~ltQk~m~~kl~-y~~ev~cTVl  705 (1064)
T KOG1144|consen  630 EFKERLNNIIVEFAEQGLNAELYYKNKEMGETVSIVPTSAISGEGIPDLLLLLVQLTQKTMVEKLA-YVDEVQCTVL  705 (1064)
T ss_pred             HHHHHHHHHHHHHHHcccchhheeecccccceEEeeecccccCCCcHHHHHHHHHHHHHHHHHHHh-hhhheeeEEE
Confidence                   011122211 11            12458899999999999999999987766544432 3344445543

>COG0481 LepA Membrane GTPase LepA [Cell envelope biogenesis, outer membrane]

Probab=99.55  E-value=2e-13  Score=104.35  Aligned_cols=163  Identities=20%  Similarity=0.215  Sum_probs=116.6

Q ss_pred             CceeEEEEEcCCCCCHHHHHHHHhhCC--CCC---------------CCCCcee-eeeeEEEEE-CCeEEEEEEEeCCCc
Q 036449            4 SRFIKCVTVGDGAVGKTCLLISYTSNT--FPT---------------DYVPTVF-DNFSANVVV-NGSTVNLGLWDTAGQ   64 (197)
Q Consensus         4 ~~~~~i~v~G~~~~GKstli~~~~~~~--~~~---------------~~~~~~~-~~~~~~~~~-~~~~~~~~i~D~~G~   64 (197)
                      ++.=+..++-+-..|||||..+++...  +..               +.--|+. ....-.+.. +|..+.++++|||||
T Consensus         7 ~~IRNFsIIAHIDHGKSTLaDRlle~t~~~~~Rem~~Q~LDsMdiERERGITIKaq~v~l~Yk~~~g~~Y~lnlIDTPGH   86 (603)
T COG0481           7 KNIRNFSIIAHIDHGKSTLADRLLELTGGLSEREMRAQVLDSMDIERERGITIKAQAVRLNYKAKDGETYVLNLIDTPGH   86 (603)
T ss_pred             hhccceEEEEEecCCcchHHHHHHHHhcCcChHHHHHHhhhhhhhHhhcCceEEeeEEEEEEEeCCCCEEEEEEcCCCCc
Confidence            344568889999999999999987532  111               1111111 111112222 567899999999999


Q ss_pred             cccccccccCcCCCcEEEEEEeCCCchhHHHHHHHHHHHHhhhCCCCCEEEEeeCCcccCCcccccCCCCCCcccHHHHH
Q 036449           65 EDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPISTAQGE  144 (197)
Q Consensus        65 ~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~  144 (197)
                      -+|.......+..|.++++|+|++.+-.-+.+ ...+..+..   +.-++-|.||+||...+.            ....+
T Consensus        87 VDFsYEVSRSLAACEGalLvVDAsQGveAQTl-AN~YlAle~---~LeIiPViNKIDLP~Adp------------ervk~  150 (603)
T COG0481          87 VDFSYEVSRSLAACEGALLVVDASQGVEAQTL-ANVYLALEN---NLEIIPVLNKIDLPAADP------------ERVKQ  150 (603)
T ss_pred             cceEEEehhhHhhCCCcEEEEECccchHHHHH-HHHHHHHHc---CcEEEEeeecccCCCCCH------------HHHHH
Confidence            99988888888899999999999998777766 344444443   478888999999977432            23334


Q ss_pred             HHHHHhCCC--ceEEeccCCCCCHHHHHHHHHHHHcCCCc
Q 036449          145 ELRKLIGAP--AYIECSSKTQQNVKAVFDAAIRVVLQPPK  182 (197)
Q Consensus       145 ~~~~~~~~~--~~~~~sa~~~~~i~~l~~~i~~~~~~~~~  182 (197)
                      +..+-.|..  ..+.+||++|.|++++++.|++.+-.+..
T Consensus       151 eIe~~iGid~~dav~~SAKtG~gI~~iLe~Iv~~iP~P~g  190 (603)
T COG0481         151 EIEDIIGIDASDAVLVSAKTGIGIEDVLEAIVEKIPPPKG  190 (603)
T ss_pred             HHHHHhCCCcchheeEecccCCCHHHHHHHHHhhCCCCCC
Confidence            555555542  47899999999999999999999877653

>KOG1707 consensus Predicted Ras related/Rac-GTP binding protein [Defense mechanisms]

Probab=99.55  E-value=4.1e-13  Score=104.83  Aligned_cols=165  Identities=24%  Similarity=0.329  Sum_probs=121.6

Q ss_pred             CCCceeEEEEEcCCCCCHHHHHHHHhhCCCCCCCCCceeeeee-EEEEECCeEEEEEEEeCCCccccccccccCcCCCcE
Q 036449            2 SASRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFS-ANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGADV   80 (197)
Q Consensus         2 ~~~~~~~i~v~G~~~~GKstli~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~   80 (197)
                      +..+.+++.|+|+.++|||.+++.+.++.+...+..+....+. ..+...+....+.+-|.+-. ....+...- ..||.
T Consensus       421 ~~R~Vf~C~V~G~k~~GKs~lL~sflgr~~~~~~~~~~~~~~avn~v~~~g~~k~LiL~ei~~~-~~~~l~~ke-~~cDv  498 (625)
T KOG1707|consen  421 TDRKVFQCFVVGPKNCGKSALLQSFLGRSMSDNNTGTTKPRYAVNSVEVKGQQKYLILREIGED-DQDFLTSKE-AACDV  498 (625)
T ss_pred             ccceeeeEEEEcCCcCchHHHHHHHhccccccccccCCCCceeeeeeeeccccceEEEeecCcc-ccccccCcc-ceeee
Confidence            3467899999999999999999999999888766666654443 33444566666777777754 222222222 67999


Q ss_pred             EEEEEeCCCchhHHHHHHHHHHHHhhhCCCCCEEEEeeCCcccCCcccccCCCCCCcccHHHHHHHHHHhCCCceEEecc
Q 036449           81 FILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPISTAQGEELRKLIGAPAYIECSS  160 (197)
Q Consensus        81 ~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa  160 (197)
                      +.++||.+++.+|... ...+..-... ...|+++|++|+|+.+..+          ....+..+++++++..+.+..|+
T Consensus       499 ~~~~YDsS~p~sf~~~-a~v~~~~~~~-~~~Pc~~va~K~dlDe~~Q----------~~~iqpde~~~~~~i~~P~~~S~  566 (625)
T KOG1707|consen  499 ACLVYDSSNPRSFEYL-AEVYNKYFDL-YKIPCLMVATKADLDEVPQ----------RYSIQPDEFCRQLGLPPPIHISS  566 (625)
T ss_pred             EEEecccCCchHHHHH-HHHHHHhhhc-cCCceEEEeeccccchhhh----------ccCCChHHHHHhcCCCCCeeecc
Confidence            9999999999999987 4444433333 5899999999999977543          11222268999999988888998


Q ss_pred             CCCCCHHHHHHHHHHHHcCCC
Q 036449          161 KTQQNVKAVFDAAIRVVLQPP  181 (197)
Q Consensus       161 ~~~~~i~~l~~~i~~~~~~~~  181 (197)
                      +.... .++|.+|+.++..+.
T Consensus       567 ~~~~s-~~lf~kL~~~A~~Ph  586 (625)
T KOG1707|consen  567 KTLSS-NELFIKLATMAQYPH  586 (625)
T ss_pred             CCCCC-chHHHHHHHhhhCCC
Confidence            86434 899999999988876

>PRK12740 elongation factor G; Reviewed

Probab=99.54  E-value=2.2e-13  Score=112.63  Aligned_cols=107  Identities=22%  Similarity=0.258  Sum_probs=72.6

Q ss_pred             EcCCCCCHHHHHHHHhhCCCC--C--CC--CCceee-------------eeeEEEEECCeEEEEEEEeCCCccccccccc
Q 036449           12 VGDGAVGKTCLLISYTSNTFP--T--DY--VPTVFD-------------NFSANVVVNGSTVNLGLWDTAGQEDYNRLRP   72 (197)
Q Consensus        12 ~G~~~~GKstli~~~~~~~~~--~--~~--~~~~~~-------------~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~   72 (197)
                      +|+.++|||||+++++...-.  .  ..  ..+..+             .....+.+.+  +.+.+|||||+..|...+.
T Consensus         1 ig~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~--~~i~liDtPG~~~~~~~~~   78 (668)
T PRK12740          1 VGHSGAGKTTLTEAILFYTGAIHRIGEVEDGTTTMDFMPEERERGISITSAATTCEWKG--HKINLIDTPGHVDFTGEVE   78 (668)
T ss_pred             CCCCCCcHHHHHHHHHHhcCCCccCccccCCcccCCCChHHHhcCCCeeeceEEEEECC--EEEEEEECCCcHHHHHHHH
Confidence            699999999999999643211  0  00  001100             1111233333  6788999999988877777


Q ss_pred             cCcCCCcEEEEEEeCCCchhHHHHHHHHHHHHhhhCCCCCEEEEeeCCcccC
Q 036449           73 LSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLRD  124 (197)
Q Consensus        73 ~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~~~ivv~nK~D~~~  124 (197)
                      ..+..+|++++|+|.++.......  .++..+...  +.|+++|+||+|+..
T Consensus        79 ~~l~~aD~vllvvd~~~~~~~~~~--~~~~~~~~~--~~p~iiv~NK~D~~~  126 (668)
T PRK12740         79 RALRVLDGAVVVVCAVGGVEPQTE--TVWRQAEKY--GVPRIIFVNKMDRAG  126 (668)
T ss_pred             HHHHHhCeEEEEEeCCCCcCHHHH--HHHHHHHHc--CCCEEEEEECCCCCC
Confidence            788899999999999987665543  333333333  789999999999864

>KOG3905 consensus Dynein light intermediate chain [Cell motility]

Probab=99.54  E-value=1.8e-13  Score=100.20  Aligned_cols=174  Identities=17%  Similarity=0.187  Sum_probs=115.0

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhhCCCCCCCCCceeeeeeEEEEECCeEEEEEEEeCCCccccccccccCcCCC----cEEE
Q 036449            7 IKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGA----DVFI   82 (197)
Q Consensus         7 ~~i~v~G~~~~GKstli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~----~~~i   82 (197)
                      -+|+|+|..|+||||||.++.+..-...-....+.+....-...+...++.+|-..|...+..+....+...    .++|
T Consensus        53 k~VlvlGdn~sGKtsLi~klqg~e~~KkgsgLeY~yl~V~de~RDd~tr~~VWiLDGd~~h~~LLk~al~ats~aetlvi  132 (473)
T KOG3905|consen   53 KNVLVLGDNGSGKTSLISKLQGSETVKKGSGLEYLYLHVHDEDRDDLTRCNVWILDGDLYHKGLLKFALPATSLAETLVI  132 (473)
T ss_pred             CeEEEEccCCCchhHHHHHhhcccccCCCCCcceEEEecccccchhhhhcceEEecCchhhhhHHhhcccccCccceEEE
Confidence            479999999999999999998765332222222222222222333446788999989766555554444432    3889


Q ss_pred             EEEeCCCchhHHHHHHHHHHHHhhhC------------------------------------------------------
Q 036449           83 LAFSLISKASYENVSKKWIPELKHYA------------------------------------------------------  108 (197)
Q Consensus        83 ~v~d~~~~~s~~~~~~~~~~~i~~~~------------------------------------------------------  108 (197)
                      ++.|++++...-+..+.|..-+....                                                      
T Consensus       133 ltasms~Pw~~lesLqkWa~Vl~ehidkl~i~~ee~ka~rqk~~k~wQeYvep~e~~pgsp~~r~t~~~~~~de~~llPL  212 (473)
T KOG3905|consen  133 LTASMSNPWTLLESLQKWASVLREHIDKLKIPPEEMKAGRQKLEKDWQEYVEPGEDQPGSPQRRTTVVGSSADEHVLLPL  212 (473)
T ss_pred             EEEecCCcHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHhcCccccCCCCcccccccccCcccccccccc
Confidence            99999998554444466655444331                                                      


Q ss_pred             --------CCCCEEEEeeCCcccCCcccccC-CCCCCcccHHHHHHHHHHhCCCceEEeccCCCCCHHHHHHHHHHHHcC
Q 036449          109 --------PGVPIILVGTKLDLRDDKQFFID-HPGAVPISTAQGEELRKLIGAPAYIECSSKTQQNVKAVFDAAIRVVLQ  179 (197)
Q Consensus       109 --------~~~~~ivv~nK~D~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~l~~~i~~~~~~  179 (197)
                              -++|++||++|+|...--....+ ............++|+..+|. ..|.+|+++..|++-+...|++..+.
T Consensus       213 ~~dtLt~NlGi~vlVV~TK~D~~s~leke~eyrDehfdfiq~~lRkFCLr~Ga-aLiyTSvKE~KNidllyKYivhr~yG  291 (473)
T KOG3905|consen  213 GQDTLTHNLGIPVLVVCTKCDAVSVLEKEHEYRDEHFDFIQSHLRKFCLRYGA-ALIYTSVKETKNIDLLYKYIVHRSYG  291 (473)
T ss_pred             CCcchhhcCCCcEEEEEeccchhhHhhhcchhhHHHHHHHHHHHHHHHHHcCc-eeEEeecccccchHHHHHHHHHHhcC
Confidence                    02489999999998432110000 011122334567899999999 89999999999999999999999887


Q ss_pred             CC
Q 036449          180 PP  181 (197)
Q Consensus       180 ~~  181 (197)
                      ..
T Consensus       292 ~~  293 (473)
T KOG3905|consen  292 FP  293 (473)
T ss_pred             cc
Confidence            53

>PRK00007 elongation factor G; Reviewed

Probab=99.54  E-value=1.7e-13  Score=113.28  Aligned_cols=116  Identities=16%  Similarity=0.110  Sum_probs=79.5

Q ss_pred             CceeEEEEEcCCCCCHHHHHHHHhhCCCC--C-----------------CCCCceeeeeeEEEEECCeEEEEEEEeCCCc
Q 036449            4 SRFIKCVTVGDGAVGKTCLLISYTSNTFP--T-----------------DYVPTVFDNFSANVVVNGSTVNLGLWDTAGQ   64 (197)
Q Consensus         4 ~~~~~i~v~G~~~~GKstli~~~~~~~~~--~-----------------~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~   64 (197)
                      .+..+|+++|+.++|||||+++++...-.  .                 .....+.+.....+.+.+  ..+.++||||+
T Consensus         8 ~~Irni~iiG~~~~GKsTL~~~ll~~~g~~~~~g~v~~~~~~~D~~~~E~~rg~ti~~~~~~~~~~~--~~~~liDTPG~   85 (693)
T PRK00007          8 ERYRNIGIMAHIDAGKTTTTERILFYTGVNHKIGEVHDGAATMDWMEQEQERGITITSAATTCFWKD--HRINIIDTPGH   85 (693)
T ss_pred             cceeEEEEECCCCCCHHHHHHHHHHhcCCccccccccCCcccCCCCHHHHhCCCCEeccEEEEEECC--eEEEEEeCCCc
Confidence            45679999999999999999999742110  0                 011111111122333444  67889999999


Q ss_pred             cccccccccCcCCCcEEEEEEeCCCchhHHHHHHHHHHHHhhhCCCCCEEEEeeCCcccCC
Q 036449           65 EDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLRDD  125 (197)
Q Consensus        65 ~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~~~ivv~nK~D~~~~  125 (197)
                      ..|.......+..+|++++|+|+..+...+..  ..+..+...  +.|.++++||+|+...
T Consensus        86 ~~f~~ev~~al~~~D~~vlVvda~~g~~~qt~--~~~~~~~~~--~~p~iv~vNK~D~~~~  142 (693)
T PRK00007         86 VDFTIEVERSLRVLDGAVAVFDAVGGVEPQSE--TVWRQADKY--KVPRIAFVNKMDRTGA  142 (693)
T ss_pred             HHHHHHHHHHHHHcCEEEEEEECCCCcchhhH--HHHHHHHHc--CCCEEEEEECCCCCCC
Confidence            88766666678889999999999877555443  334444444  6899999999999753

>KOG0461 consensus Selenocysteine-specific elongation factor [Translation, ribosomal structure and biogenesis]

Probab=99.53  E-value=2.9e-13  Score=99.88  Aligned_cols=170  Identities=19%  Similarity=0.220  Sum_probs=109.5

Q ss_pred             CCC-CceeEEEEEcCCCCCHHHHHHHHhhCC----CCCCCCCcee-----eeeeEEEE------ECCeEEEEEEEeCCCc
Q 036449            1 MSA-SRFIKCVTVGDGAVGKTCLLISYTSNT----FPTDYVPTVF-----DNFSANVV------VNGSTVNLGLWDTAGQ   64 (197)
Q Consensus         1 m~~-~~~~~i~v~G~~~~GKstli~~~~~~~----~~~~~~~~~~-----~~~~~~~~------~~~~~~~~~i~D~~G~   64 (197)
                      |+. +..+++.++|+..+|||||.+++..-.    |.....++..     ..++....      ..+..+++.++|+||+
T Consensus         1 m~~~p~n~N~GiLGHvDSGKTtLarals~~~STaAFDk~pqS~eRgiTLDLGFS~~~v~~parLpq~e~lq~tlvDCPGH   80 (522)
T KOG0461|consen    1 MTSPPSNLNLGILGHVDSGKTTLARALSELGSTAAFDKHPQSTERGITLDLGFSTMTVLSPARLPQGEQLQFTLVDCPGH   80 (522)
T ss_pred             CCCCCceeeeeeEeeccCchHHHHHHHHhhccchhhccCCcccccceeEeecceeeecccccccCccccceeEEEeCCCc
Confidence            544 456999999999999999999987532    3332222221     11111111      1456788999999999


Q ss_pred             cccccccccCcCCCcEEEEEEeCCCchhHHHHHHHHHHHHhhhCCCCCEEEEeeCCcccCCcccccCCCCCCcccHHHHH
Q 036449           65 EDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPISTAQGE  144 (197)
Q Consensus        65 ~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~  144 (197)
                      ...-+.......-.|..++|+|+..+...+.+....+..+..    ...++|.||.|..++++       ...-....+.
T Consensus        81 asLIRtiiggaqiiDlm~lviDv~kG~QtQtAEcLiig~~~c----~klvvvinkid~lpE~q-------r~ski~k~~k  149 (522)
T KOG0461|consen   81 ASLIRTIIGGAQIIDLMILVIDVQKGKQTQTAECLIIGELLC----KKLVVVINKIDVLPENQ-------RASKIEKSAK  149 (522)
T ss_pred             HHHHHHHHhhhheeeeeeEEEehhcccccccchhhhhhhhhc----cceEEEEeccccccchh-------hhhHHHHHHH
Confidence            654443333333457889999999987777764444544443    35688889999877643       0011122333


Q ss_pred             HHHHHh------CCCceEEeccCCC----CCHHHHHHHHHHHHcCCC
Q 036449          145 ELRKLI------GAPAYIECSSKTQ----QNVKAVFDAAIRVVLQPP  181 (197)
Q Consensus       145 ~~~~~~------~~~~~~~~sa~~~----~~i~~l~~~i~~~~~~~~  181 (197)
                      +..+.+      +..|++++||+.|    .++.++.+.|..++.++.
T Consensus       150 k~~KtLe~t~f~g~~PI~~vsa~~G~~~~~~i~eL~e~l~s~if~P~  196 (522)
T KOG0461|consen  150 KVRKTLESTGFDGNSPIVEVSAADGYFKEEMIQELKEALESRIFEPK  196 (522)
T ss_pred             HHHHHHHhcCcCCCCceeEEecCCCccchhHHHHHHHHHHHhhcCCC
Confidence            333332      3358999999999    788888888888887764

>KOG1490 consensus GTP-binding protein CRFG/NOG1 (ODN superfamily) [General function prediction only]

Probab=99.53  E-value=1.6e-14  Score=110.89  Aligned_cols=168  Identities=15%  Similarity=0.056  Sum_probs=117.2

Q ss_pred             CceeEEEEEcCCCCCHHHHHHHHhhCCC-CCCCCCceeeeeeEEEEECCeEEEEEEEeCCCccccc----ccc-----cc
Q 036449            4 SRFIKCVTVGDGAVGKTCLLISYTSNTF-PTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQEDYN----RLR-----PL   73 (197)
Q Consensus         4 ~~~~~i~v~G~~~~GKstli~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~----~~~-----~~   73 (197)
                      +..-.++++|-+++|||||++.+..... ...|..|+...+..++.+..  ..++++||||.-+.-    ...     ..
T Consensus       166 p~trTlllcG~PNVGKSSf~~~vtradvevqpYaFTTksL~vGH~dykY--lrwQViDTPGILD~plEdrN~IEmqsITA  243 (620)
T KOG1490|consen  166 PNTRTLLVCGYPNVGKSSFNNKVTRADDEVQPYAFTTKLLLVGHLDYKY--LRWQVIDTPGILDRPEEDRNIIEMQIITA  243 (620)
T ss_pred             CCcCeEEEecCCCCCcHhhcccccccccccCCcccccchhhhhhhhhhe--eeeeecCCccccCcchhhhhHHHHHHHHH
Confidence            4456789999999999999988886554 45677777666666655544  678899999943211    111     11


Q ss_pred             CcCCCcEEEEEEeCCC--chhHHHHHHHHHHHHhhhCCCCCEEEEeeCCcccCCcccccCCCCCCcccHH---HHHHHHH
Q 036449           74 SYRGADVFILAFSLIS--KASYENVSKKWIPELKHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPISTA---QGEELRK  148 (197)
Q Consensus        74 ~~~~~~~~i~v~d~~~--~~s~~~~~~~~~~~i~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~---~~~~~~~  148 (197)
                      ..+-..+++|+.|++.  +-|..+- -.++..|...+.|.|+|+|+||+|+....+          ++.+   ..+.+..
T Consensus       244 LAHLraaVLYfmDLSe~CGySva~Q-vkLfhsIKpLFaNK~~IlvlNK~D~m~~ed----------L~~~~~~ll~~~~~  312 (620)
T KOG1490|consen  244 LAHLRSAVLYFMDLSEMCGYSVAAQ-VKLYHSIKPLFANKVTILVLNKIDAMRPED----------LDQKNQELLQTIID  312 (620)
T ss_pred             HHHhhhhheeeeechhhhCCCHHHH-HHHHHHhHHHhcCCceEEEeecccccCccc----------cCHHHHHHHHHHHh
Confidence            1222458899999964  4555554 477888888888999999999999977543          3332   2333333


Q ss_pred             HhCCCceEEeccCCCCCHHHHHHHHHHHHcCCCchhh
Q 036449          149 LIGAPAYIECSSKTQQNVKAVFDAAIRVVLQPPKTKK  185 (197)
Q Consensus       149 ~~~~~~~~~~sa~~~~~i~~l~~~i~~~~~~~~~~~~  185 (197)
                      ..+. +++++|+.+..|+-++.......++..+-+.+
T Consensus       313 ~~~v-~v~~tS~~~eegVm~Vrt~ACe~LLa~RVE~K  348 (620)
T KOG1490|consen  313 DGNV-KVVQTSCVQEEGVMDVRTTACEALLAARVEQK  348 (620)
T ss_pred             ccCc-eEEEecccchhceeeHHHHHHHHHHHHHHHHH
Confidence            3344 89999999999999988888877766654443

>COG2895 CysN GTPases - Sulfate adenylate transferase subunit 1 [Inorganic ion transport and metabolism]

Probab=99.52  E-value=1.7e-13  Score=101.29  Aligned_cols=158  Identities=19%  Similarity=0.168  Sum_probs=103.3

Q ss_pred             CCCCceeEEEEEcCCCCCHHHHHHHHhhCCCC--C--------CC--CCceeee---------------eeEEEE-----
Q 036449            1 MSASRFIKCVTVGDGAVGKTCLLISYTSNTFP--T--------DY--VPTVFDN---------------FSANVV-----   48 (197)
Q Consensus         1 m~~~~~~~i~v~G~~~~GKstli~~~~~~~~~--~--------~~--~~~~~~~---------------~~~~~~-----   48 (197)
                      |.....+|.+.+|+..-||||||-+++...-.  +        ..  ..+.+..               ...++.     
T Consensus         1 ~~~k~lLRfiTcGSVDDGKSTLIGRLL~Dtk~i~eDQla~l~~dS~~~~t~g~~~D~ALLvDGL~AEREQGITIDVAYRy   80 (431)
T COG2895           1 QQHKSLLRFITCGSVDDGKSTLIGRLLYDTKAIYEDQLASLERDSKRKGTQGEKIDLALLVDGLEAEREQGITIDVAYRY   80 (431)
T ss_pred             CCcccceeEEEeccccCcchhhhhhhhhcchhhhHHHHHHHhcccccccCCCCccchhhhhhhhHHHHhcCceEEEEeee
Confidence            34567799999999999999999888753210  0        00  0111110               011111     


Q ss_pred             ECCeEEEEEEEeCCCccccccccccCcCCCcEEEEEEeCCCchhHHHHHHHHHHHHhhhCCCCCEEEEeeCCcccCCccc
Q 036449           49 VNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLRDDKQF  128 (197)
Q Consensus        49 ~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~~~ivv~nK~D~~~~~~~  128 (197)
                      +.-....|.+-|||||+.|.+........||+.|+++|+-.+-.-+.-.+.++..+-   .-..+++++||+||....+ 
T Consensus        81 FsT~KRkFIiADTPGHeQYTRNMaTGASTadlAIlLVDAR~Gvl~QTrRHs~I~sLL---GIrhvvvAVNKmDLvdy~e-  156 (431)
T COG2895          81 FSTEKRKFIIADTPGHEQYTRNMATGASTADLAILLVDARKGVLEQTRRHSFIASLL---GIRHVVVAVNKMDLVDYSE-  156 (431)
T ss_pred             cccccceEEEecCCcHHHHhhhhhcccccccEEEEEEecchhhHHHhHHHHHHHHHh---CCcEEEEEEeeecccccCH-
Confidence            122335677999999999999998889999999999999655433333333333332   2357889999999987543 


Q ss_pred             ccCCCCCCcccHHHHHHHHHHhCCC--ceEEeccCCCCCHH
Q 036449          129 FIDHPGAVPISTAQGEELRKLIGAP--AYIECSSKTQQNVK  167 (197)
Q Consensus       129 ~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~sa~~~~~i~  167 (197)
                           ..+.....+-..|+.+++..  .++++||..|+|+-
T Consensus       157 -----~~F~~I~~dy~~fa~~L~~~~~~~IPiSAl~GDNV~  192 (431)
T COG2895         157 -----EVFEAIVADYLAFAAQLGLKDVRFIPISALLGDNVV  192 (431)
T ss_pred             -----HHHHHHHHHHHHHHHHcCCCcceEEechhccCCccc
Confidence                 11112234456788888764  58999999999864

>smart00010 small_GTPase Small GTPase of the Ras superfamily; ill-defined subfamily

Probab=99.51  E-value=3.3e-14  Score=93.06  Aligned_cols=113  Identities=26%  Similarity=0.368  Sum_probs=80.1

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhhCCCCCCCC-CceeeeeeEEEEECCeEEEEEEEeCCCccccccccccCcCCCcEEEEEE
Q 036449            7 IKCVTVGDGAVGKTCLLISYTSNTFPTDYV-PTVFDNFSANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAF   85 (197)
Q Consensus         7 ~~i~v~G~~~~GKstli~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~   85 (197)
                      +||+++|..|+|||+|+.++....+...+. ++.+                          +......+.+.++.+++||
T Consensus         1 ~kvv~~G~~gvGKt~l~~~~~~~~~~~~~~~~t~~--------------------------~~~~~~~~~~s~~~~~~v~   54 (124)
T smart00010        1 FKVVGIGDSGVGKVGKSARFVQFPFDYVPTVFTIG--------------------------IDVYDPTSYESFDVVLQCW   54 (124)
T ss_pred             CEEEEECCCChhHHHHHHHHhcCCccccCceehhh--------------------------hhhccccccCCCCEEEEEE
Confidence            589999999999999999998887765443 3332                          3333445667789999999


Q ss_pred             eCCCchhHHHHHHHHHHHHhhhC-CCCCEEEEeeCCcccCCcccccCCCCCCcccHHHHHHHHHHhCCCceEEeccCCCC
Q 036449           86 SLISKASYENVSKKWIPELKHYA-PGVPIILVGTKLDLRDDKQFFIDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQQ  164 (197)
Q Consensus        86 d~~~~~s~~~~~~~~~~~i~~~~-~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~  164 (197)
                      +.++.++++.+   |...+.... .+.|.++++||.|+.....          +..++..         .++++|++++.
T Consensus        55 ~~~~~~s~~~~---~~~~i~~~~k~dl~~~~~~nk~dl~~~~~----------~~~~~~~---------~~~~~s~~~~~  112 (124)
T smart00010       55 RVDDRDSADNK---NVPEVLVGNKSDLPILVGGNRDVLEEERQ----------VATEEGL---------EFAETSAKTPE  112 (124)
T ss_pred             EccCHHHHHHH---hHHHHHhcCCCCCcEEEEeechhhHhhCc----------CCHHHHH---------HHHHHhCCCcc
Confidence            99999988654   666655443 5788999999999843221          2222222         45677888888


Q ss_pred             CHH
Q 036449          165 NVK  167 (197)
Q Consensus       165 ~i~  167 (197)
                      |+.
T Consensus       113 ~~~  115 (124)
T smart00010      113 EGE  115 (124)
T ss_pred             hhh
Confidence            874

SMART predicts Ras-like small GTPases of the ARF, RAB, RAN, RAS, and SAR subfamilies. Others that could not be classified in this way are predicted to be members of the small GTPase superfamily without predictions of the subfamily.

>PRK09602 translation-associated GTPase; Reviewed

Probab=99.51  E-value=1.3e-12  Score=101.06  Aligned_cols=82  Identities=23%  Similarity=0.214  Sum_probs=54.7

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhhCCCC-CCCCCceeeeeeEEEE---------------------EC-CeEEEEEEEeCCC
Q 036449            7 IKCVTVGDGAVGKTCLLISYTSNTFP-TDYVPTVFDNFSANVV---------------------VN-GSTVNLGLWDTAG   63 (197)
Q Consensus         7 ~~i~v~G~~~~GKstli~~~~~~~~~-~~~~~~~~~~~~~~~~---------------------~~-~~~~~~~i~D~~G   63 (197)
                      ++|.++|.++||||||++++.+..+. .+++.++.+.......                     .+ .....+++||+||
T Consensus         2 ~kigivG~pnvGKSTlfn~Lt~~~~~~~~y~f~t~~p~~g~~~v~~~~~~~r~~~~~~~~~~~~~~~~~~~~i~i~D~aG   81 (396)
T PRK09602          2 ITIGLVGKPNVGKSTFFNAATLADVEIANYPFTTIDPNVGVAYVRVECPCKELGVKCNPRNGKCIDGTRFIPVELIDVAG   81 (396)
T ss_pred             cEEEEECCCCCCHHHHHHHHhCCcccccCCCCcceeeeeeeeeeccCCchhhhhhhhccccccccCCcceeeEEEEEcCC
Confidence            68999999999999999999977654 3444333111111111                     11 1236789999999


Q ss_pred             cc----ccccccccC---cCCCcEEEEEEeCC
Q 036449           64 QE----DYNRLRPLS---YRGADVFILAFSLI   88 (197)
Q Consensus        64 ~~----~~~~~~~~~---~~~~~~~i~v~d~~   88 (197)
                      ..    ....+-..+   ++++|++++|+|..
T Consensus        82 l~~ga~~g~glg~~fL~~ir~ad~ll~Vvd~~  113 (396)
T PRK09602         82 LVPGAHEGRGLGNQFLDDLRQADALIHVVDAS  113 (396)
T ss_pred             cCCCccchhhHHHHHHHHHHHCCEEEEEEeCC
Confidence            42    223333344   77899999999997

>KOG1532 consensus GTPase XAB1, interacts with DNA repair protein XPA [Replication, recombination and repair]

Probab=99.50  E-value=2.2e-13  Score=97.52  Aligned_cols=127  Identities=17%  Similarity=0.126  Sum_probs=73.1

Q ss_pred             EEEEEEEeCCCccc-cc-----cccccC--cCCCcEEEEEEeCCCchhHHHHHHHH---HHHHhhhCCCCCEEEEeeCCc
Q 036449           53 TVNLGLWDTAGQED-YN-----RLRPLS--YRGADVFILAFSLISKASYENVSKKW---IPELKHYAPGVPIILVGTKLD  121 (197)
Q Consensus        53 ~~~~~i~D~~G~~~-~~-----~~~~~~--~~~~~~~i~v~d~~~~~s~~~~~~~~---~~~i~~~~~~~~~ivv~nK~D  121 (197)
                      .....++|||||-+ |.     +.....  .....++++|+|..+..+.......+   ..++.+.  ..|+|++.||+|
T Consensus       115 ~~~~~liDTPGQIE~FtWSAsGsIIte~lass~ptvv~YvvDt~rs~~p~tFMSNMlYAcSilykt--klp~ivvfNK~D  192 (366)
T KOG1532|consen  115 EFDYVLIDTPGQIEAFTWSASGSIITETLASSFPTVVVYVVDTPRSTSPTTFMSNMLYACSILYKT--KLPFIVVFNKTD  192 (366)
T ss_pred             ccCEEEEcCCCceEEEEecCCccchHhhHhhcCCeEEEEEecCCcCCCchhHHHHHHHHHHHHHhc--cCCeEEEEeccc
Confidence            35577999999843 21     111111  12345778888874433222111111   2333333  799999999999


Q ss_pred             ccCCcccc-------------c--CCCCCCcccHHHHHHHHHHhCCCceEEeccCCCCCHHHHHHHHHHHHcCCC
Q 036449          122 LRDDKQFF-------------I--DHPGAVPISTAQGEELRKLIGAPAYIECSSKTQQNVKAVFDAAIRVVLQPP  181 (197)
Q Consensus       122 ~~~~~~~~-------------~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~l~~~i~~~~~~~~  181 (197)
                      +....-..             .  .+.....+......-+-.-|+....+.+||.+|.|.+++|..+.+.+.+..
T Consensus       193 v~d~~fa~eWm~DfE~FqeAl~~~~~~y~s~l~~SmSL~leeFY~~lrtv~VSs~tG~G~ddf~~av~~~vdEy~  267 (366)
T KOG1532|consen  193 VSDSEFALEWMTDFEAFQEALNEAESSYMSNLTRSMSLMLEEFYRSLRTVGVSSVTGEGFDDFFTAVDESVDEYE  267 (366)
T ss_pred             ccccHHHHHHHHHHHHHHHHHHhhccchhHHhhhhHHHHHHHHHhhCceEEEecccCCcHHHHHHHHHHHHHHHH
Confidence            97653211             0  111111222233333444444446789999999999999999998877653

>smart00275 G_alpha G protein alpha subunit

Probab=99.50  E-value=9.4e-13  Score=100.22  Aligned_cols=125  Identities=18%  Similarity=0.205  Sum_probs=84.0

Q ss_pred             EEEEEEeCCCccccccccccCcCCCcEEEEEEeCCCc----------hhHHHHHHHHHHHHhhhC-CCCCEEEEeeCCcc
Q 036449           54 VNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISK----------ASYENVSKKWIPELKHYA-PGVPIILVGTKLDL  122 (197)
Q Consensus        54 ~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~----------~s~~~~~~~~~~~i~~~~-~~~~~ivv~nK~D~  122 (197)
                      +.+.+||.+|+...+..|..++.+++++|||+|+++.          ..+.+....|-..+.... .+.|+++++||.|+
T Consensus       184 ~~~~~~DvgGqr~~R~kW~~~f~~v~~IiFvvdlSd~d~~~~Ed~~~nrl~esl~~f~~l~~~~~~~~~piil~~NK~D~  263 (342)
T smart00275      184 LFFRMFDVGGQRSERKKWIHCFDNVTAIIFCVALSEYDQVLEEDESTNRMQESLNLFESICNSRWFANTSIILFLNKIDL  263 (342)
T ss_pred             eEEEEEecCCchhhhhhHHHHhCCCCEEEEEEECcccccchhccCcchHHHHHHHHHHHHHcCccccCCcEEEEEecHHh
Confidence            5578999999999999999999999999999999974          345555344444444333 68999999999998


Q ss_pred             cCCccc---c----cCCCCCCcccHHHHHH-----HHHHhC----C-CceEEeccCCCCCHHHHHHHHHHHHcCC
Q 036449          123 RDDKQF---F----IDHPGAVPISTAQGEE-----LRKLIG----A-PAYIECSSKTQQNVKAVFDAAIRVVLQP  180 (197)
Q Consensus       123 ~~~~~~---~----~~~~~~~~~~~~~~~~-----~~~~~~----~-~~~~~~sa~~~~~i~~l~~~i~~~~~~~  180 (197)
                      ..+.-.   .    .+..+.  .+.+.+..     |.....    . ...+.++|.+-.++..+|+.+...+...
T Consensus       264 ~~~Kl~~~~l~~~fp~y~g~--~~~~~~~~yi~~~F~~~~~~~~~r~~y~h~t~a~Dt~~~~~v~~~v~~~I~~~  336 (342)
T smart00275      264 FEEKIKKVPLVDYFPDYKGP--NDYEAAAKFIKQKFLRLNRNSSRKSIYHHFTCATDTRNIRVVFDAVKDIILQR  336 (342)
T ss_pred             HHHHhCCCchhccCCCCCCC--CCHHHHHHHHHHHHHHhccCCCCceEEEEEeeecccHHHHHHHHHHHHHHHHH
Confidence            653211   1    111111  22333333     222221    1 1345688999999999999888776654

Subunit of G proteins that contains the guanine nucleotide binding site

>TIGR00991 3a0901s02IAP34 GTP-binding protein (Chloroplast Envelope Protein Translocase)

Probab=99.50  E-value=6.3e-13  Score=98.34  Aligned_cols=119  Identities=14%  Similarity=0.161  Sum_probs=71.1

Q ss_pred             CceeEEEEEcCCCCCHHHHHHHHhhCCCC--CCCCCceeeeeeEEEEECCeEEEEEEEeCCCcccccccc-------ccC
Q 036449            4 SRFIKCVTVGDGAVGKTCLLISYTSNTFP--TDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQEDYNRLR-------PLS   74 (197)
Q Consensus         4 ~~~~~i~v~G~~~~GKstli~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~-------~~~   74 (197)
                      ...++|+++|.+|+||||++|++++....  ....+............++  ..+.+|||||..+.....       ..+
T Consensus        36 ~~~~rIllvGktGVGKSSliNsIlG~~v~~vs~f~s~t~~~~~~~~~~~G--~~l~VIDTPGL~d~~~~~e~~~~~ik~~  113 (313)
T TIGR00991        36 VSSLTILVMGKGGVGKSSTVNSIIGERIATVSAFQSEGLRPMMVSRTRAG--FTLNIIDTPGLIEGGYINDQAVNIIKRF  113 (313)
T ss_pred             ccceEEEEECCCCCCHHHHHHHHhCCCcccccCCCCcceeEEEEEEEECC--eEEEEEECCCCCchHHHHHHHHHHHHHH
Confidence            35689999999999999999999986532  2222221111122233444  678899999965432111       111


Q ss_pred             c--CCCcEEEEEEeCCCchhHHHHHHHHHHHHhhhCC---CCCEEEEeeCCcccCC
Q 036449           75 Y--RGADVFILAFSLISKASYENVSKKWIPELKHYAP---GVPIILVGTKLDLRDD  125 (197)
Q Consensus        75 ~--~~~~~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~---~~~~ivv~nK~D~~~~  125 (197)
                      +  ...|+++||..++... +.......+..+...+.   -.+++++.|+.|..+.
T Consensus       114 l~~~g~DvVLyV~rLD~~R-~~~~DkqlLk~Iqe~FG~~iw~~~IVVfTh~d~~~p  168 (313)
T TIGR00991       114 LLGKTIDVLLYVDRLDAYR-VDTLDGQVIRAITDSFGKDIWRKSLVVLTHAQFSPP  168 (313)
T ss_pred             hhcCCCCEEEEEeccCccc-CCHHHHHHHHHHHHHhhhhhhccEEEEEECCccCCC
Confidence            1  2589999996654321 11111234444444431   3578999999997643

>cd01853 Toc34_like Toc34-like (Translocon at the Outer-envelope membrane of Chloroplasts)

Probab=99.49  E-value=8.5e-13  Score=96.09  Aligned_cols=119  Identities=15%  Similarity=0.112  Sum_probs=73.3

Q ss_pred             CceeEEEEEcCCCCCHHHHHHHHhhCCCCC--CCCCceeeeeeEEEEECCeEEEEEEEeCCCcccccc---c-------c
Q 036449            4 SRFIKCVTVGDGAVGKTCLLISYTSNTFPT--DYVPTVFDNFSANVVVNGSTVNLGLWDTAGQEDYNR---L-------R   71 (197)
Q Consensus         4 ~~~~~i~v~G~~~~GKstli~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~---~-------~   71 (197)
                      ...++|+++|.+|+|||||+|++++.....  ...+++..........++  ..+.+|||||......   .       .
T Consensus        29 ~~~~~IllvG~tGvGKSSliNaLlg~~~~~v~~~~~~T~~~~~~~~~~~g--~~i~vIDTPGl~~~~~~~~~~~~~~~~I  106 (249)
T cd01853          29 DFSLTILVLGKTGVGKSSTINSIFGERKAATSAFQSETLRVREVSGTVDG--FKLNIIDTPGLLESVMDQRVNRKILSSI  106 (249)
T ss_pred             cCCeEEEEECCCCCcHHHHHHHHhCCCCcccCCCCCceEEEEEEEEEECC--eEEEEEECCCcCcchhhHHHHHHHHHHH
Confidence            456999999999999999999999875422  222333222222333445  5678999999654310   0       1


Q ss_pred             ccCcC--CCcEEEEEEeCCCc-hhHHHHHHHHHHHHhhhCC---CCCEEEEeeCCcccCCc
Q 036449           72 PLSYR--GADVFILAFSLISK-ASYENVSKKWIPELKHYAP---GVPIILVGTKLDLRDDK  126 (197)
Q Consensus        72 ~~~~~--~~~~~i~v~d~~~~-~s~~~~~~~~~~~i~~~~~---~~~~ivv~nK~D~~~~~  126 (197)
                      ..++.  ..|++++|..++.. .+..+  ..+++.+...+.   -.++++|.||+|.....
T Consensus       107 ~~~l~~~~idvIL~V~rlD~~r~~~~d--~~llk~I~e~fG~~i~~~~ivV~T~~d~~~p~  165 (249)
T cd01853         107 KRYLKKKTPDVVLYVDRLDMYRRDYLD--LPLLRAITDSFGPSIWRNAIVVLTHAASSPPD  165 (249)
T ss_pred             HHHHhccCCCEEEEEEcCCCCCCCHHH--HHHHHHHHHHhChhhHhCEEEEEeCCccCCCC
Confidence            11222  46788888766543 22222  244555554432   24799999999997644

This family contains several Toc proteins, including Toc34, Toc33, Toc120, Toc159, Toc86, Toc125, and Toc90. The Toc complex at the outer envelope membrane of chloroplasts is a molecular machine of ~500 kDa that contains a single Toc159 protein, four Toc75 molecules, and four or five copies of Toc34. Toc64 and Toc12 are associated with the translocon, but do not appear to be part of the core complex. The Toc translocon initiates the import of nuclear-encoded preproteins from the cytosol into the organelle. Toc34 and Toc159 are both GTPases, while Toc75 is a beta-barrel integral membrane protein. Toc159 is equally distributed between a soluble cytoplasmic form and a membrane-inserted form, suggesting that assembly of the Toc complex is dynamic. Toc34 and Toc75 act sequentially to mediate docking and insertion of Toc159 resulting in assembly of the functional translocon.

>PF04548 AIG1: AIG1 family; InterPro: IPR006703 This entry represents a domain found in Arabidopsis protein AIG1 which appears to be involved in plant resistance to bacteria

Probab=99.49  E-value=1.1e-12  Score=93.86  Aligned_cols=166  Identities=19%  Similarity=0.157  Sum_probs=96.7

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhhCCCCCCC---CCceeeeeeEEEEECCeEEEEEEEeCCCccccc-------cc----cc
Q 036449            7 IKCVTVGDGAVGKTCLLISYTSNTFPTDY---VPTVFDNFSANVVVNGSTVNLGLWDTAGQEDYN-------RL----RP   72 (197)
Q Consensus         7 ~~i~v~G~~~~GKstli~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~-------~~----~~   72 (197)
                      ++|+++|..|+||||++|.+++.......   .+.+.........+++  ..+.++||||..+..       ..    ..
T Consensus         1 l~IlllG~tGsGKSs~~N~ilg~~~f~~~~~~~~~t~~~~~~~~~~~g--~~v~VIDTPGl~d~~~~~~~~~~~i~~~l~   78 (212)
T PF04548_consen    1 LRILLLGKTGSGKSSLGNSILGKEVFKSGSSAKSVTQECQKYSGEVDG--RQVTVIDTPGLFDSDGSDEEIIREIKRCLS   78 (212)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHTSS-SS--TTTSS--SS-EEEEEEETT--EEEEEEE--SSEETTEEHHHHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHhcccceeeccccCCcccccceeeeeecc--eEEEEEeCCCCCCCcccHHHHHHHHHHHHH
Confidence            68999999999999999999987653322   1222233333446677  456799999943211       00    11


Q ss_pred             cCcCCCcEEEEEEeCCCchhHHHHHHHHHHHHhhhCC---CCCEEEEeeCCcccCCcccccCCCCCCcccHHHHHHHHHH
Q 036449           73 LSYRGADVFILAFSLISKASYENVSKKWIPELKHYAP---GVPIILVGTKLDLRDDKQFFIDHPGAVPISTAQGEELRKL  149 (197)
Q Consensus        73 ~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~---~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~  149 (197)
                      ....+.|++++|+.+.+. +..+  ...+..+...+.   -..++||.|..|........   ...........+.+.+.
T Consensus        79 ~~~~g~ha~llVi~~~r~-t~~~--~~~l~~l~~~FG~~~~k~~ivvfT~~d~~~~~~~~---~~l~~~~~~~l~~li~~  152 (212)
T PF04548_consen   79 LCSPGPHAFLLVIPLGRF-TEED--REVLELLQEIFGEEIWKHTIVVFTHADELEDDSLE---DYLKKESNEALQELIEK  152 (212)
T ss_dssp             HTTT-ESEEEEEEETTB--SHHH--HHHHHHHHHHHCGGGGGGEEEEEEEGGGGTTTTHH---HHHHHHHHHHHHHHHHH
T ss_pred             hccCCCeEEEEEEecCcc-hHHH--HHHHHHHHHHccHHHHhHhhHHhhhccccccccHH---HHHhccCchhHhHHhhh
Confidence            134568999999999833 3222  233333443331   23578888888876543200   00000011235667777


Q ss_pred             hCCCceEEeccC------CCCCHHHHHHHHHHHHcCCC
Q 036449          150 IGAPAYIECSSK------TQQNVKAVFDAAIRVVLQPP  181 (197)
Q Consensus       150 ~~~~~~~~~sa~------~~~~i~~l~~~i~~~~~~~~  181 (197)
                      .+. .|+..+.+      ....+.+|++.|.+++.++.
T Consensus       153 c~~-R~~~f~n~~~~~~~~~~qv~~Ll~~ie~mv~~n~  189 (212)
T PF04548_consen  153 CGG-RYHVFNNKTKDKEKDESQVSELLEKIEEMVQENG  189 (212)
T ss_dssp             TTT-CEEECCTTHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred             cCC-EEEEEeccccchhhhHHHHHHHHHHHHHHHHHcC
Confidence            777 78887777      34578999999998887764

The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 (avrRpt2-induced gene) exhibits RPS2- and avrRpt2-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2 []. The domain is also apparently found in a number of mammalian proteins, for example the rat immune-associated nucleotide 4 protein. ; GO: 0005525 GTP binding; PDB: 3LXX_A 3BB4_A 3DEF_A 3BB3_A 2J3E_A 3V70_B 3BB1_A 1H65_B 2XTP_A 3P1J_C ....

>TIGR00157 ribosome small subunit-dependent GTPase A

Probab=99.49  E-value=3e-13  Score=98.50  Aligned_cols=96  Identities=24%  Similarity=0.295  Sum_probs=77.2

Q ss_pred             cccccccccCcCCCcEEEEEEeCCCch-hHHHHHHHHHHHHhhhCCCCCEEEEeeCCcccCCcccccCCCCCCcccHHHH
Q 036449           65 EDYNRLRPLSYRGADVFILAFSLISKA-SYENVSKKWIPELKHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPISTAQG  143 (197)
Q Consensus        65 ~~~~~~~~~~~~~~~~~i~v~d~~~~~-s~~~~~~~~~~~i~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~  143 (197)
                      +++..+...++.++|.+++|+|++++. ++..+ ..|+..+..  .++|+++|+||+|+.+...          ...+.+
T Consensus        24 eR~~~L~r~~~~n~D~viiV~d~~~p~~s~~~l-~r~l~~~~~--~~i~~vIV~NK~DL~~~~~----------~~~~~~   90 (245)
T TIGR00157        24 ERKNELTRPIVANIDQIVIVSSAVLPELSLNQL-DRFLVVAEA--QNIEPIIVLNKIDLLDDED----------MEKEQL   90 (245)
T ss_pred             cccceEECcccccCCEEEEEEECCCCCCCHHHH-HHHHHHHHH--CCCCEEEEEECcccCCCHH----------HHHHHH
Confidence            577888888999999999999999887 78887 788877665  4899999999999965432          333444


Q ss_pred             HHHHHHhCCCceEEeccCCCCCHHHHHHHHHH
Q 036449          144 EELRKLIGAPAYIECSSKTQQNVKAVFDAAIR  175 (197)
Q Consensus       144 ~~~~~~~~~~~~~~~sa~~~~~i~~l~~~i~~  175 (197)
                      ..+. ..+. +++++||+++.|++++|+.+.+
T Consensus        91 ~~~~-~~g~-~v~~~SAktg~gi~eLf~~l~~  120 (245)
T TIGR00157        91 DIYR-NIGY-QVLMTSSKNQDGLKELIEALQN  120 (245)
T ss_pred             HHHH-HCCC-eEEEEecCCchhHHHHHhhhcC
Confidence            4443 4676 8999999999999999998764

The Aquifex aeolicus ortholog is split into consecutive open reading frames. Consequently, this model was build in fragment mode (-f option).

>TIGR00490 aEF-2 translation elongation factor aEF-2

Probab=99.49  E-value=1.3e-13  Score=114.37  Aligned_cols=117  Identities=18%  Similarity=0.065  Sum_probs=78.7

Q ss_pred             CceeEEEEEcCCCCCHHHHHHHHhhCCCC-----------CCC-------CCceeeee-eEEEEECCeEEEEEEEeCCCc
Q 036449            4 SRFIKCVTVGDGAVGKTCLLISYTSNTFP-----------TDY-------VPTVFDNF-SANVVVNGSTVNLGLWDTAGQ   64 (197)
Q Consensus         4 ~~~~~i~v~G~~~~GKstli~~~~~~~~~-----------~~~-------~~~~~~~~-~~~~~~~~~~~~~~i~D~~G~   64 (197)
                      .+.-+|+++|+.++|||||+.+++.....           .++       ..|..... ......++..+.+.+|||||+
T Consensus        17 ~~irnI~ivGh~~~GKTTL~~~ll~~~g~i~~~~~~~~~~~d~~~~e~~rg~Ti~~~~~~~~~~~~~~~~~i~liDTPG~   96 (720)
T TIGR00490        17 KFIRNIGIVAHIDHGKTTLSDNLLAGAGMISEELAGQQLYLDFDEQEQERGITINAANVSMVHEYEGNEYLINLIDTPGH   96 (720)
T ss_pred             ccccEEEEEEeCCCCHHHHHHHHHHHcCCCchhcCCceeecCCCHHHHhhcchhhcccceeEEeecCCceEEEEEeCCCc
Confidence            34569999999999999999999753110           011       11111111 111224556688999999999


Q ss_pred             cccccccccCcCCCcEEEEEEeCCCchhHHHHHHHHHHHHhhhCCCCCEEEEeeCCcccC
Q 036449           65 EDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLRD  124 (197)
Q Consensus        65 ~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~~~ivv~nK~D~~~  124 (197)
                      .+|.......+..+|++|+|+|+.+....+..  ..+......  +.|.++++||+|...
T Consensus        97 ~~f~~~~~~al~~aD~~llVvda~~g~~~~t~--~~~~~~~~~--~~p~ivviNKiD~~~  152 (720)
T TIGR00490        97 VDFGGDVTRAMRAVDGAIVVVCAVEGVMPQTE--TVLRQALKE--NVKPVLFINKVDRLI  152 (720)
T ss_pred             cccHHHHHHHHHhcCEEEEEEecCCCCCccHH--HHHHHHHHc--CCCEEEEEEChhccc
Confidence            98887777788999999999999875433322  222222222  678899999999864

This model represents archaeal elongation factor 2, a protein more similar to eukaryotic EF-2 than to bacterial EF-G, both in sequence similarity and in sharing with eukaryotes the property of having a diphthamide (modified His) residue at a conserved position. The diphthamide can be ADP-ribosylated by diphtheria toxin in the presence of NAD.

>PRK13768 GTPase; Provisional

Probab=99.49  E-value=4e-13  Score=98.39  Aligned_cols=124  Identities=18%  Similarity=0.159  Sum_probs=72.0

Q ss_pred             EEEEEeCCCcccc---ccccccC---cCC--CcEEEEEEeCCCchhHHHHHH-HHHHHHhhhCCCCCEEEEeeCCcccCC
Q 036449           55 NLGLWDTAGQEDY---NRLRPLS---YRG--ADVFILAFSLISKASYENVSK-KWIPELKHYAPGVPIILVGTKLDLRDD  125 (197)
Q Consensus        55 ~~~i~D~~G~~~~---~~~~~~~---~~~--~~~~i~v~d~~~~~s~~~~~~-~~~~~i~~~~~~~~~ivv~nK~D~~~~  125 (197)
                      .+.+||+||+.+.   +..+..+   +..  ++++++++|.+...+..+... .|+........+.|+++|+||+|+...
T Consensus        98 ~~~~~d~~g~~~~~~~~~~~~~~~~~l~~~~~~~ii~liD~~~~~~~~d~~~~~~l~~~~~~~~~~~~i~v~nK~D~~~~  177 (253)
T PRK13768         98 DYVLVDTPGQMELFAFRESGRKLVERLSGSSKSVVVFLIDAVLAKTPSDFVSLLLLALSVQLRLGLPQIPVLNKADLLSE  177 (253)
T ss_pred             CEEEEeCCcHHHHHhhhHHHHHHHHHHHhcCCeEEEEEechHHhCCHHHHHHHHHHHHHHHHHcCCCEEEEEEhHhhcCc
Confidence            4679999997653   2222222   222  789999999976554433212 222222212237999999999999764


Q ss_pred             cccc-----cCC----------C--CCCcccHHHHHHHHHHhC-CCceEEeccCCCCCHHHHHHHHHHHHcC
Q 036449          126 KQFF-----IDH----------P--GAVPISTAQGEELRKLIG-APAYIECSSKTQQNVKAVFDAAIRVVLQ  179 (197)
Q Consensus       126 ~~~~-----~~~----------~--~~~~~~~~~~~~~~~~~~-~~~~~~~sa~~~~~i~~l~~~i~~~~~~  179 (197)
                      ....     ...          .  ...... .+..+..+..+ ..+++++|++++.|++++.++|.+.+..
T Consensus       178 ~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~-~~~~~~i~~~~~~~~vi~iSa~~~~gl~~L~~~I~~~l~~  248 (253)
T PRK13768        178 EELERILKWLEDPEYLLEELKLEKGLQGLLS-LELLRALEETGLPVRVIPVSAKTGEGFDELYAAIQEVFCG  248 (253)
T ss_pred             hhHHHHHHHHhCHHHHHHHHhcccchHHHHH-HHHHHHHHHHCCCCcEEEEECCCCcCHHHHHHHHHHHcCC
Confidence            3210     000          0  000000 00111222334 2378999999999999999999888754

>PF05783 DLIC: Dynein light intermediate chain (DLIC); InterPro: IPR022780 This entry consists of several eukaryotic dynein light intermediate chain proteins

Probab=99.47  E-value=2e-12  Score=101.40  Aligned_cols=172  Identities=19%  Similarity=0.267  Sum_probs=111.3

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhhCCCCCCCCCceeeeeeEEEEEC---CeEEEEEEEeCCCccccccccccCcCCC----c
Q 036449            7 IKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVN---GSTVNLGLWDTAGQEDYNRLRPLSYRGA----D   79 (197)
Q Consensus         7 ~~i~v~G~~~~GKstli~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~i~D~~G~~~~~~~~~~~~~~~----~   79 (197)
                      -.|+|+|..++|||||+.+|.+..   ...++.+-.|......+   ....++.+|-..|...+..+....+...    -
T Consensus        26 k~vlvlG~~~~GKttli~~L~~~e---~~~~~~aLeYty~~v~d~~~dd~~rl~vw~L~g~~~~~~LLk~~lt~~~l~~t  102 (472)
T PF05783_consen   26 KSVLVLGDKGSGKTTLIARLQGIE---DPKKGLALEYTYLDVKDEDRDDLARLNVWELDGDPSHSDLLKFALTPENLPNT  102 (472)
T ss_pred             ceEEEEeCCCCchHHHHHHhhccC---CCCCCcccceEEEeeccCcCCcCceeeEEEcCCCcchHhHhcccCCcccccce
Confidence            579999999999999999987543   23334433333222111   2335689999998777776666655532    3


Q ss_pred             EEEEEEeCCCchhHHHHHHHHHHHHhhh-------------------------C--------------------------
Q 036449           80 VFILAFSLISKASYENVSKKWIPELKHY-------------------------A--------------------------  108 (197)
Q Consensus        80 ~~i~v~d~~~~~s~~~~~~~~~~~i~~~-------------------------~--------------------------  108 (197)
                      .+|+|.|.+.|..+-+-...|+..++..                         .                          
T Consensus       103 ~vvIvlDlS~PW~~~esL~~W~~vl~~~i~~L~~~~e~~~e~~~kl~~~~q~Y~ep~~~~~~~s~~~~~~~~~~~~~~~~  182 (472)
T PF05783_consen  103 LVVIVLDLSKPWNIMESLEKWLSVLREHIEKLKSDPEEREELRQKLERQWQEYVEPGDSSDSGSPNRRSPSSSSSDDESV  182 (472)
T ss_pred             EEEEEecCCChHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHhhhccccccccCcccccccccccccccc
Confidence            8899999999755332223332222211                         0                          


Q ss_pred             --C----------CCCEEEEeeCCcccCCcccccC-CCCCCcccHHHHHHHHHHhCCCceEEeccCCCCCHHHHHHHHHH
Q 036449          109 --P----------GVPIILVGTKLDLRDDKQFFID-HPGAVPISTAQGEELRKLIGAPAYIECSSKTQQNVKAVFDAAIR  175 (197)
Q Consensus       109 --~----------~~~~ivv~nK~D~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~l~~~i~~  175 (197)
                        |          ++|++||++|+|....-....+ ............+.++..||+ .++.||++...+++.++..|.+
T Consensus       183 ~lpl~~g~l~~nlGipi~VV~tksD~~~~Lek~~~~~~e~~DfIqq~LR~~cL~yGA-sL~yts~~~~~n~~~L~~yi~h  261 (472)
T PF05783_consen  183 LLPLGEGVLTENLGIPIVVVCTKSDKIETLEKETDWKEEHFDFIQQYLRTFCLKYGA-SLIYTSVKEEKNLDLLYKYILH  261 (472)
T ss_pred             cCCCCCcccccccCcceEEEEecccHHHHHhhhcccchhhHHHHHHHHHHHHHhcCC-eEEEeeccccccHHHHHHHHHH
Confidence              0          2599999999998542110000 001111233457889999999 7888999999999999999999


Q ss_pred             HHcCCCc
Q 036449          176 VVLQPPK  182 (197)
Q Consensus       176 ~~~~~~~  182 (197)
                      .++...-
T Consensus       262 ~l~~~~f  268 (472)
T PF05783_consen  262 RLYGFPF  268 (472)
T ss_pred             HhccCCC
Confidence            9887643

The light intermediate chains (LICs) of cytoplasmic dynein consist of multiple isoforms, which undergo post-translational modification to produce a large number of species. DLIC1 is known to be involved in assembly, organisation, and function of centrosomes and mitotic spindles when bound to pericentrin [, ]. DLIC2 is a subunit of cytoplasmic dynein 2 that may play a role in maintaining Golgi organisation by binding cytoplasmic dynein 2 to its Golgi-associated cargo [].

>PF03029 ATP_bind_1: Conserved hypothetical ATP binding protein; InterPro: IPR004130 Members of this family are found in a range of archaea and eukaryotes and have hypothesised ATP binding activity

Probab=99.44  E-value=1.5e-13  Score=99.42  Aligned_cols=123  Identities=19%  Similarity=0.158  Sum_probs=61.2

Q ss_pred             EEEEEeCCCccccccccccCc--------CCCcEEEEEEeCCCchhHHHHHHHHHHHHhhhC-CCCCEEEEeeCCcccCC
Q 036449           55 NLGLWDTAGQEDYNRLRPLSY--------RGADVFILAFSLISKASYENVSKKWIPELKHYA-PGVPIILVGTKLDLRDD  125 (197)
Q Consensus        55 ~~~i~D~~G~~~~~~~~~~~~--------~~~~~~i~v~d~~~~~s~~~~~~~~~~~i~~~~-~~~~~ivv~nK~D~~~~  125 (197)
                      .+.++|||||-++...+...-        ...-++++++|.....+.......++-.+.... -+.|.+.|.||+|+.+.
T Consensus        92 ~y~l~DtPGQiElf~~~~~~~~i~~~L~~~~~~~~v~LvD~~~~~~~~~f~s~~L~s~s~~~~~~lP~vnvlsK~Dl~~~  171 (238)
T PF03029_consen   92 DYLLFDTPGQIELFTHSDSGRKIVERLQKNGRLVVVFLVDSSFCSDPSKFVSSLLLSLSIMLRLELPHVNVLSKIDLLSK  171 (238)
T ss_dssp             SEEEEE--SSHHHHHHSHHHHHHHHTSSS----EEEEEE-GGG-SSHHHHHHHHHHHHHHHHHHTSEEEEEE--GGGS-H
T ss_pred             cEEEEeCCCCEEEEEechhHHHHHHHHhhhcceEEEEEEecccccChhhHHHHHHHHHHHHhhCCCCEEEeeeccCcccc
Confidence            467999999987654443322        345588999998654432222122222222211 27999999999999762


Q ss_pred             cccc--c--CCCCC--------CcccHHHHHHHHHHhCCC-ceEEeccCCCCCHHHHHHHHHHHH
Q 036449          126 KQFF--I--DHPGA--------VPISTAQGEELRKLIGAP-AYIECSSKTQQNVKAVFDAAIRVV  177 (197)
Q Consensus       126 ~~~~--~--~~~~~--------~~~~~~~~~~~~~~~~~~-~~~~~sa~~~~~i~~l~~~i~~~~  177 (197)
                      ....  .  .....        .....+...++...++.. .++++|+.+++++.+++..+.+.+
T Consensus       172 ~~~~~l~~~~d~~~l~~~~~~~~~~l~~~i~~~l~~~~~~~~f~pls~~~~~~~~~L~~~id~a~  236 (238)
T PF03029_consen  172 YLEFILEWFEDPDSLEDLLESDYKKLNEEIAELLDDFGLVIRFIPLSSKDGEGMEELLAAIDKAN  236 (238)
T ss_dssp             HHHHHHHHHHSHHHHHHHHHT-HHHHHHHHHHHCCCCSSS---EE-BTTTTTTHHHHHHHHHHHH
T ss_pred             hhHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHhhcCCCceEEEEECCChHHHHHHHHHHHHHh
Confidence            2000  0  00000        001112222333344555 799999999999999999987764

; GO: 0000166 nucleotide binding; PDB: 1YR7_A 1YRA_B 1YR8_A 1YR6_A 1YR9_A 1YRB_A 2OXR_A.

>TIGR00101 ureG urease accessory protein UreG

Probab=99.43  E-value=4.4e-12  Score=89.61  Aligned_cols=101  Identities=22%  Similarity=0.223  Sum_probs=61.9

Q ss_pred             EEEEEeCCCccccccccccCcCCCcEEEEEEeCCCchhHHHHHHHHHHHHhhhCCCCCE--EEEeeCCcccCCcccccCC
Q 036449           55 NLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPI--ILVGTKLDLRDDKQFFIDH  132 (197)
Q Consensus        55 ~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~~~--ivv~nK~D~~~~~~~~~~~  132 (197)
                      ...++++.|..--....+.   -++.+|.|+|+.+.++...   .+.       +++..  ++++||+|+.+...     
T Consensus        93 D~iiIEt~G~~l~~~~~~~---l~~~~i~vvD~~~~~~~~~---~~~-------~qi~~ad~~~~~k~d~~~~~~-----  154 (199)
T TIGR00101        93 EMVFIESGGDNLSATFSPE---LADLTIFVIDVAAGDKIPR---KGG-------PGITRSDLLVINKIDLAPMVG-----  154 (199)
T ss_pred             CEEEEECCCCCcccccchh---hhCcEEEEEEcchhhhhhh---hhH-------hHhhhccEEEEEhhhcccccc-----
Confidence            3446777773211112111   2578999999987765322   111       13344  88999999975311     


Q ss_pred             CCCCcccHHHHHHHHHH-hCCCceEEeccCCCCCHHHHHHHHHHHHc
Q 036449          133 PGAVPISTAQGEELRKL-IGAPAYIECSSKTQQNVKAVFDAAIRVVL  178 (197)
Q Consensus       133 ~~~~~~~~~~~~~~~~~-~~~~~~~~~sa~~~~~i~~l~~~i~~~~~  178 (197)
                           ...+...+..+. ....+++++||++|.|++++|++|.+.+.
T Consensus       155 -----~~~~~~~~~~~~~~~~~~i~~~Sa~~g~gi~el~~~i~~~~~  196 (199)
T TIGR00101       155 -----ADLGVMERDAKKMRGEKPFIFTNLKTKEGLDTVIDWIEHYAL  196 (199)
T ss_pred             -----ccHHHHHHHHHHhCCCCCEEEEECCCCCCHHHHHHHHHhhcC
Confidence                 112222333332 33348999999999999999999987654

This model represents UreG, a GTP hydrolase that acts in the assembly of the nickel metallocenter of urease. It is found only in urease-positive species, although some urease-positive species (e.g. Bacillus subtilis) lack this protein. A similar protein, hypB, is an accessory protein for expression of hydrogenase, which also uses nickel.

>KOG3886 consensus GTP-binding protein [Signal transduction mechanisms]

Probab=99.42  E-value=2.9e-13  Score=94.54  Aligned_cols=165  Identities=18%  Similarity=0.273  Sum_probs=103.9

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHhhCCCCCC--CCCceeeeeeEEEEECCeEEEEEEEeCCCcccc-----ccccccCcCCC
Q 036449            6 FIKCVTVGDGAVGKTCLLISYTSNTFPTD--YVPTVFDNFSANVVVNGSTVNLGLWDTAGQEDY-----NRLRPLSYRGA   78 (197)
Q Consensus         6 ~~~i~v~G~~~~GKstli~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~-----~~~~~~~~~~~   78 (197)
                      .=||+++|.+|+|||++-..++.+....+  ..+.+-+....+..+-| .+.+.+||++||+.+     .......+.++
T Consensus         4 ~kKvlLMGrsGsGKsSmrsiiF~ny~a~D~~rlg~tidveHsh~RflG-nl~LnlwDcGgqe~fmen~~~~q~d~iF~nV   82 (295)
T KOG3886|consen    4 KKKVLLMGRSGSGKSSMRSIIFANYIARDTRRLGATIDVEHSHVRFLG-NLVLNLWDCGGQEEFMENYLSSQEDNIFRNV   82 (295)
T ss_pred             cceEEEeccCCCCccccchhhhhhhhhhhhhccCCcceeeehhhhhhh-hheeehhccCCcHHHHHHHHhhcchhhheeh
Confidence            34899999999999999877775543221  11111112222222333 366889999999843     34667789999


Q ss_pred             cEEEEEEeCCCchhHHHHHHHH---HHHHhhhCCCCCEEEEeeCCcccCCcccccCCCCCCcccH----HHHHHHHHHhC
Q 036449           79 DVFILAFSLISKASYENVSKKW---IPELKHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPIST----AQGEELRKLIG  151 (197)
Q Consensus        79 ~~~i~v~d~~~~~s~~~~~~~~---~~~i~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~  151 (197)
                      ++.|+|+|++..+-..++ ..+   ++.+-+..|...+.+..+|+|+.....        +.+..    +....+....+
T Consensus        83 ~vli~vFDves~e~~~D~-~~yqk~Le~ll~~SP~AkiF~l~hKmDLv~~d~--------r~~if~~r~~~l~~~s~~~~  153 (295)
T KOG3886|consen   83 QVLIYVFDVESREMEKDF-HYYQKCLEALLQNSPEAKIFCLLHKMDLVQEDA--------RELIFQRRKEDLRRLSRPLE  153 (295)
T ss_pred             eeeeeeeeccchhhhhhH-HHHHHHHHHHHhcCCcceEEEEEeechhcccch--------HHHHHHHHHHHHHHhccccc
Confidence            999999999887655555 333   455555568888999999999976432        11111    22233333333


Q ss_pred             CCceEEeccCCCCCHHHHHHHHHHHHcCCCc
Q 036449          152 APAYIECSSKTQQNVKAVFDAAIRVVLQPPK  182 (197)
Q Consensus       152 ~~~~~~~sa~~~~~i~~l~~~i~~~~~~~~~  182 (197)
                      + .++++|..+ +.+...+..+...+.....
T Consensus       154 ~-~~f~TsiwD-etl~KAWS~iv~~lipn~~  182 (295)
T KOG3886|consen  154 C-KCFPTSIWD-ETLYKAWSSIVYNLIPNVS  182 (295)
T ss_pred             c-cccccchhh-HHHHHHHHHHHHhhCCChH
Confidence            3 577777764 4566667777766665543

>cd01882 BMS1 Bms1

Probab=99.42  E-value=5.7e-12  Score=90.84  Aligned_cols=143  Identities=19%  Similarity=0.157  Sum_probs=83.5

Q ss_pred             CceeEEEEEcCCCCCHHHHHHHHhhCCCCCCCCCceeeeeeEEEEECCeEEEEEEEeCCCccccccccccCcCCCcEEEE
Q 036449            4 SRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFIL   83 (197)
Q Consensus         4 ~~~~~i~v~G~~~~GKstli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~   83 (197)
                      .....|+++|.+|+|||||++.+....-........+. +  .+ .......+.++||||..  ... ...++.+|.+++
T Consensus        37 ~~~~~i~ivG~~~~GKstl~~~l~~~~~~~~~~~~~g~-i--~i-~~~~~~~i~~vDtPg~~--~~~-l~~ak~aDvVll  109 (225)
T cd01882          37 PPPLVVAVVGPPGVGKTTLIKSLVKNYTKQNISDIKGP-I--TV-VTGKKRRLTFIECPNDI--NAM-IDIAKVADLVLL  109 (225)
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHHhhcccCcccccccc-E--EE-EecCCceEEEEeCCchH--HHH-HHHHHhcCEEEE
Confidence            34577999999999999999988864221111111111 1  11 11234567799999863  111 123577999999


Q ss_pred             EEeCCCchhHHHHHHHHHHHHhhhCCCCCE-EEEeeCCcccCCcccccCCCCCCcccHHHHHH-HHH-HhCCCceEEecc
Q 036449           84 AFSLISKASYENVSKKWIPELKHYAPGVPI-ILVGTKLDLRDDKQFFIDHPGAVPISTAQGEE-LRK-LIGAPAYIECSS  160 (197)
Q Consensus        84 v~d~~~~~s~~~~~~~~~~~i~~~~~~~~~-ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~-~~~-~~~~~~~~~~sa  160 (197)
                      ++|.+.+.....  ..++..+...  +.|. ++|+||.|+.+...       .......+.+. +.. .....+++.+||
T Consensus       110 viDa~~~~~~~~--~~i~~~l~~~--g~p~vi~VvnK~D~~~~~~-------~~~~~~~~l~~~~~~~~~~~~ki~~iSa  178 (225)
T cd01882         110 LIDASFGFEMET--FEFLNILQVH--GFPRVMGVLTHLDLFKKNK-------TLRKTKKRLKHRFWTEVYQGAKLFYLSG  178 (225)
T ss_pred             EEecCcCCCHHH--HHHHHHHHHc--CCCeEEEEEeccccCCcHH-------HHHHHHHHHHHHHHHhhCCCCcEEEEee
Confidence            999986654433  2445555444  5675 45999999864321       00011122222 221 233448999999


Q ss_pred             CCCC
Q 036449          161 KTQQ  164 (197)
Q Consensus       161 ~~~~  164 (197)
                      ++..
T Consensus       179 ~~~~  182 (225)
T cd01882         179 IVHG  182 (225)
T ss_pred             ccCC
Confidence            9873

Bms1 is an essential, evolutionarily conserved, nucleolar protein. Its depletion interferes with processing of the 35S pre-rRNA at sites A0, A1, and A2, and the formation of 40S subunits. Bms1, the putative endonuclease Rc11, and the essential U3 small nucleolar RNA form a stable subcomplex that is believed to control an early step in the formation of the 40S subumit. The C-terminal domain of Bms1 contains a GTPase-activating protein (GAP) that functions intramolecularly. It is believed that Rc11 activates Bms1 by acting as a guanine-nucleotide exchange factor (GEF) to promote GDP/GTP exchange, and that activated (GTP-bound) Bms1 delivers Rc11 to the preribosomes.

>PF05049 IIGP: Interferon-inducible GTPase (IIGP); InterPro: IPR007743 Interferon-inducible GTPase (IIGP) is thought to play a role in in intracellular defence

Probab=99.40  E-value=1.7e-12  Score=98.48  Aligned_cols=165  Identities=16%  Similarity=0.206  Sum_probs=81.4

Q ss_pred             ceeEEEEEcCCCCCHHHHHHHHhhCCCCCCC-CCce--eeeeeEEEEECCeEEEEEEEeCCCccc--cc---cccccCcC
Q 036449            5 RFIKCVTVGDGAVGKTCLLISYTSNTFPTDY-VPTV--FDNFSANVVVNGSTVNLGLWDTAGQED--YN---RLRPLSYR   76 (197)
Q Consensus         5 ~~~~i~v~G~~~~GKstli~~~~~~~~~~~~-~~~~--~~~~~~~~~~~~~~~~~~i~D~~G~~~--~~---~~~~~~~~   76 (197)
                      ..++|+|+|.+|+|||||||++.+-.-.+.. .++.  ..+...........-.+.+||.||.-.  |.   .+...-+.
T Consensus        34 ~~l~IaV~G~sGsGKSSfINalrGl~~~d~~aA~tGv~etT~~~~~Y~~p~~pnv~lWDlPG~gt~~f~~~~Yl~~~~~~  113 (376)
T PF05049_consen   34 APLNIAVTGESGSGKSSFINALRGLGHEDEGAAPTGVVETTMEPTPYPHPKFPNVTLWDLPGIGTPNFPPEEYLKEVKFY  113 (376)
T ss_dssp             --EEEEEEESTTSSHHHHHHHHTT--TTSTTS--SSSHSCCTS-EEEE-SS-TTEEEEEE--GGGSS--HHHHHHHTTGG
T ss_pred             CceEEEEECCCCCCHHHHHHHHhCCCCCCcCcCCCCCCcCCCCCeeCCCCCCCCCeEEeCCCCCCCCCCHHHHHHHcccc
Confidence            4689999999999999999999864332221 1111  112222222212222477999999432  21   12223355


Q ss_pred             CCcEEEEEEeCCCchhHHHHHHHHHHHHhhhCCCCCEEEEeeCCccc--CCcccccCCCCCCcccH----HHHHHHHH--
Q 036449           77 GADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLR--DDKQFFIDHPGAVPIST----AQGEELRK--  148 (197)
Q Consensus        77 ~~~~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~~~ivv~nK~D~~--~~~~~~~~~~~~~~~~~----~~~~~~~~--  148 (197)
                      .-|.+|++.+-    .|....-.+...++..  +.|+++|-+|+|..  .++.     ..+...+.    ++.++.+.  
T Consensus       114 ~yD~fiii~s~----rf~~ndv~La~~i~~~--gK~fyfVRTKvD~Dl~~~~~-----~~p~~f~~e~~L~~IR~~c~~~  182 (376)
T PF05049_consen  114 RYDFFIIISSE----RFTENDVQLAKEIQRM--GKKFYFVRTKVDSDLYNERR-----RKPRTFNEEKLLQEIRENCLEN  182 (376)
T ss_dssp             G-SEEEEEESS----S--HHHHHHHHHHHHT--T-EEEEEE--HHHHHHHHHC-----C-STT--HHTHHHHHHHHHHHH
T ss_pred             ccCEEEEEeCC----CCchhhHHHHHHHHHc--CCcEEEEEecccccHhhhhc-----cCCcccCHHHHHHHHHHHHHHH
Confidence            67888887763    2333323556777777  78999999999962  1110     00111121    22222222  


Q ss_pred             --HhC--CCceEEeccCCC--CCHHHHHHHHHHHHcCC
Q 036449          149 --LIG--APAYIECSSKTQ--QNVKAVFDAAIRVVLQP  180 (197)
Q Consensus       149 --~~~--~~~~~~~sa~~~--~~i~~l~~~i~~~~~~~  180 (197)
                        +.+  .+++|-+|+.+-  .++..|.+.+.+.+..+
T Consensus       183 L~k~gv~~P~VFLVS~~dl~~yDFp~L~~tL~~dLp~~  220 (376)
T PF05049_consen  183 LQKAGVSEPQVFLVSSFDLSKYDFPKLEETLEKDLPAH  220 (376)
T ss_dssp             HHCTT-SS--EEEB-TTTTTSTTHHHHHHHHHHHS-GG
T ss_pred             HHHcCCCcCceEEEeCCCcccCChHHHHHHHHHHhHHH
Confidence              223  336888998874  45777888887766554

IIGP is predominantly associated with the Golgi apparatus and also localizes to the endoplasmic reticulum and exerts a distinct role in IFN-induced intracellular membrane trafficking or processing [].; GO: 0005525 GTP binding, 0016817 hydrolase activity, acting on acid anhydrides, 0016020 membrane; PDB: 1TPZ_A 1TQD_A 1TQ6_A 1TQ2_B 1TQ4_A.

>TIGR02836 spore_IV_A stage IV sporulation protein A

Probab=99.38  E-value=3.8e-11  Score=91.51  Aligned_cols=160  Identities=14%  Similarity=0.158  Sum_probs=99.8

Q ss_pred             ceeEEEEEcCCCCCHHHHHHHHhhC----CCC-------------CCCCC----ceeeee----eEEEE-ECCeEEEEEE
Q 036449            5 RFIKCVTVGDGAVGKTCLLISYTSN----TFP-------------TDYVP----TVFDNF----SANVV-VNGSTVNLGL   58 (197)
Q Consensus         5 ~~~~i~v~G~~~~GKstli~~~~~~----~~~-------------~~~~~----~~~~~~----~~~~~-~~~~~~~~~i   58 (197)
                      ..+.|.|+|+.++|||||+++|...    ...             .....    |+...+    ...+. .++-...+.+
T Consensus        16 G~IyIGvvGpvrtGKSTfIn~fm~q~VlP~i~~~~~k~Ra~DELpqs~~GktItTTePkfvP~kAvEI~~~~~~~~~Vrl   95 (492)
T TIGR02836        16 GDIYIGVVGPVRTGKSTFIKKFMELLVLPNISNEYDKERAQDELPQSAAGKTIMTTEPKFVPNEAVEININEGTKFKVRL   95 (492)
T ss_pred             CcEEEEEEcCCCCChHHHHHHHHhhhccccccchhHHhHHHhccCcCCCCCCcccCCCccccCcceEEeccCCCcccEEE
Confidence            3488999999999999999999977    222             22222    222222    11222 2344567889


Q ss_pred             EeCCCcccc--------cc-----------c----------cccCcC-CCcEEEEEE-eCC----CchhHHHHHHHHHHH
Q 036449           59 WDTAGQEDY--------NR-----------L----------RPLSYR-GADVFILAF-SLI----SKASYENVSKKWIPE  103 (197)
Q Consensus        59 ~D~~G~~~~--------~~-----------~----------~~~~~~-~~~~~i~v~-d~~----~~~s~~~~~~~~~~~  103 (197)
                      +||+|-..-        ..           -          ....+. .+++.|+|. |.+    .++.+..+...++..
T Consensus        96 IDcvG~~v~GalG~~r~~k~RmV~TPW~d~~IPF~~AAeiGT~kVI~dhstIgivVtTDgsi~dI~Re~y~~aEe~~i~e  175 (492)
T TIGR02836        96 VDCVGYTVKGALGYMEEDKPRMVSTPWYDYEIPFEEAAEIGTRKVIQEHSTIGVVVTTDGTITDIPREDYVEAEERVIEE  175 (492)
T ss_pred             EECCCcccCCCccceeccccccccCCcccccCchhhhhhhhHHHHHHhcCcEEEEEEcCCCccccccccchHHHHHHHHH
Confidence            999992211        01           0          112233 688888887 654    224455666788888


Q ss_pred             HhhhCCCCCEEEEeeCCcccCCcccccCCCCCCcccHHHHHHHHHHhCCCceEEeccCCCCCHHHHHHHHHHHHcCC
Q 036449          104 LKHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQQNVKAVFDAAIRVVLQP  180 (197)
Q Consensus       104 i~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~l~~~i~~~~~~~  180 (197)
                      ++..  +.|++++.|+.|....            ...+.+..+..+++. +++.+|+.+- .-+++...+.+.|++.
T Consensus       176 Lk~~--~kPfiivlN~~dp~~~------------et~~l~~~l~eky~v-pvl~v~c~~l-~~~DI~~il~~vL~EF  236 (492)
T TIGR02836       176 LKEL--NKPFIILLNSTHPYHP------------ETEALRQELEEKYDV-PVLAMDVESM-RESDILSVLEEVLYEF  236 (492)
T ss_pred             HHhc--CCCEEEEEECcCCCCc------------hhHHHHHHHHHHhCC-ceEEEEHHHc-CHHHHHHHHHHHHhcC
Confidence            8888  8999999999994321            123445567788886 8888887742 3444555555555554

A comparative genome analysis of all sequenced genomes of shows a number of proteins conserved strictly among the endospore-forming subset of the Firmicutes. This protein, a member of this panel, is designated stage IV sporulation protein A. It acts in the mother cell compartment and plays a role in spore coat morphogenesis.

>PRK09435 membrane ATPase/protein kinase; Provisional

Probab=99.38  E-value=9e-12  Score=93.88  Aligned_cols=109  Identities=15%  Similarity=0.144  Sum_probs=65.4

Q ss_pred             EEEEEEEeCCCccccccccccCcCCCcEEEEEEeCCCchhHHHHHHHHHHHHhhhCCCCCEEEEeeCCcccCCcccccCC
Q 036449           53 TVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLRDDKQFFIDH  132 (197)
Q Consensus        53 ~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~~~ivv~nK~D~~~~~~~~~~~  132 (197)
                      .+.+.|+||+|...-.   ......+|.++++.+...+..++...    ..+.    ...-++|+||.|+.....     
T Consensus       148 g~d~viieT~Gv~qs~---~~i~~~aD~vlvv~~p~~gd~iq~~k----~gi~----E~aDIiVVNKaDl~~~~~-----  211 (332)
T PRK09435        148 GYDVILVETVGVGQSE---TAVAGMVDFFLLLQLPGAGDELQGIK----KGIM----ELADLIVINKADGDNKTA-----  211 (332)
T ss_pred             CCCEEEEECCCCccch---hHHHHhCCEEEEEecCCchHHHHHHH----hhhh----hhhheEEeehhcccchhH-----
Confidence            3567899999964221   11466799999997644444443331    1111    123389999999865321     


Q ss_pred             CCCCcccHHHHHHHHHHh------CCCceEEeccCCCCCHHHHHHHHHHHHcCC
Q 036449          133 PGAVPISTAQGEELRKLI------GAPAYIECSSKTQQNVKAVFDAAIRVVLQP  180 (197)
Q Consensus       133 ~~~~~~~~~~~~~~~~~~------~~~~~~~~sa~~~~~i~~l~~~i~~~~~~~  180 (197)
                        . .....+........      ...+++.+||+++.|++++++.|.+.+...
T Consensus       212 --a-~~~~~el~~~L~l~~~~~~~w~~pVi~vSA~~g~GIdeL~~~I~~~~~~l  262 (332)
T PRK09435        212 --A-RRAAAEYRSALRLLRPKDPGWQPPVLTCSALEGEGIDEIWQAIEDHRAAL  262 (332)
T ss_pred             --H-HHHHHHHHHHHhcccccccCCCCCEEEEECCCCCCHHHHHHHHHHHHHHh
Confidence              0 00111112111111      114799999999999999999999875543

>PLN00116 translation elongation factor EF-2 subunit; Provisional

Probab=99.37  E-value=1.6e-12  Score=109.45  Aligned_cols=116  Identities=14%  Similarity=0.116  Sum_probs=79.4

Q ss_pred             CceeEEEEEcCCCCCHHHHHHHHhhCCC--CCCCCCce------------eeee---eEEEEE--------------CCe
Q 036449            4 SRFIKCVTVGDGAVGKTCLLISYTSNTF--PTDYVPTV------------FDNF---SANVVV--------------NGS   52 (197)
Q Consensus         4 ~~~~~i~v~G~~~~GKstli~~~~~~~~--~~~~~~~~------------~~~~---~~~~~~--------------~~~   52 (197)
                      .+.-+|+++|+.++|||||+.+++...-  ........            +...   ...+.+              .+.
T Consensus        17 ~~Irni~iiGhvd~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~~~~~~~~~   96 (843)
T PLN00116         17 HNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDESLKDFKGERDGN   96 (843)
T ss_pred             cCccEEEEEcCCCCCHHHHHHHHHHhcCCcccccCCceeeccCcHHHHHhCCceecceeEEEeecccccccccccccCCC
Confidence            4567899999999999999999985432  11000000            0000   011111              123


Q ss_pred             EEEEEEEeCCCccccccccccCcCCCcEEEEEEeCCCchhHHHHHHHHHHHHhhhCCCCCEEEEeeCCccc
Q 036449           53 TVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLR  123 (197)
Q Consensus        53 ~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~~~ivv~nK~D~~  123 (197)
                      .+.++++||||+.+|.......+..+|++|+|+|+..+-..... .. +..+...  +.|+++++||+|..
T Consensus        97 ~~~inliDtPGh~dF~~e~~~al~~~D~ailVvda~~Gv~~~t~-~~-~~~~~~~--~~p~i~~iNK~D~~  163 (843)
T PLN00116         97 EYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTE-TV-LRQALGE--RIRPVLTVNKMDRC  163 (843)
T ss_pred             ceEEEEECCCCHHHHHHHHHHHHhhcCEEEEEEECCCCCcccHH-HH-HHHHHHC--CCCEEEEEECCccc
Confidence            57789999999999988777788999999999999987554443 23 3333333  68999999999997

>PTZ00416 elongation factor 2; Provisional

Probab=99.37  E-value=3.6e-12  Score=107.28  Aligned_cols=116  Identities=11%  Similarity=0.090  Sum_probs=78.8

Q ss_pred             CceeEEEEEcCCCCCHHHHHHHHhhCCC--CCCCCCce------------eeee---eEEEEEC--------CeEEEEEE
Q 036449            4 SRFIKCVTVGDGAVGKTCLLISYTSNTF--PTDYVPTV------------FDNF---SANVVVN--------GSTVNLGL   58 (197)
Q Consensus         4 ~~~~~i~v~G~~~~GKstli~~~~~~~~--~~~~~~~~------------~~~~---~~~~~~~--------~~~~~~~i   58 (197)
                      .+.-+|+++|+.++|||||+.+++...-  ......+.            +...   .....+.        ++...+.+
T Consensus        17 ~~irni~iiGh~d~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~~~~~~i~l   96 (836)
T PTZ00416         17 DQIRNMSVIAHVDHGKSTLTDSLVCKAGIISSKNAGDARFTDTRADEQERGITIKSTGISLYYEHDLEDGDDKQPFLINL   96 (836)
T ss_pred             cCcCEEEEECCCCCCHHHHHHHHHHhcCCcccccCCceeecccchhhHhhcceeeccceEEEeecccccccCCCceEEEE
Confidence            4556999999999999999999986321  11100000            0000   0111222        22567889


Q ss_pred             EeCCCccccccccccCcCCCcEEEEEEeCCCchhHHHHHHHHHHHHhhhCCCCCEEEEeeCCccc
Q 036449           59 WDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLR  123 (197)
Q Consensus        59 ~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~~~ivv~nK~D~~  123 (197)
                      +||||+.+|.......+..+|++|+|+|+.++-..+..  ..+..+...  +.|+++++||+|+.
T Consensus        97 iDtPG~~~f~~~~~~al~~~D~ailVvda~~g~~~~t~--~~~~~~~~~--~~p~iv~iNK~D~~  157 (836)
T PTZ00416         97 IDSPGHVDFSSEVTAALRVTDGALVVVDCVEGVCVQTE--TVLRQALQE--RIRPVLFINKVDRA  157 (836)
T ss_pred             EcCCCHHhHHHHHHHHHhcCCeEEEEEECCCCcCccHH--HHHHHHHHc--CCCEEEEEEChhhh
Confidence            99999998887777788999999999999887544432  333444443  68999999999997

>TIGR00073 hypB hydrogenase accessory protein HypB

Probab=99.36  E-value=2.4e-11  Score=86.63  Aligned_cols=153  Identities=14%  Similarity=0.103  Sum_probs=84.2

Q ss_pred             CCceeEEEEEcCCCCCHHHHHHHHhhCCCCC-------CCCC-ce-eeee----eEEEEEC-C-----------------
Q 036449            3 ASRFIKCVTVGDGAVGKTCLLISYTSNTFPT-------DYVP-TV-FDNF----SANVVVN-G-----------------   51 (197)
Q Consensus         3 ~~~~~~i~v~G~~~~GKstli~~~~~~~~~~-------~~~~-~~-~~~~----~~~~~~~-~-----------------   51 (197)
                      ......|.++|..|+|||||++++.......       .... .. ....    .....+. +                 
T Consensus        19 ~~~~~~i~~~G~~gsGKTTli~~l~~~~~~~~~v~v~~~~~~~~~D~~~~~~~~~~~~~l~~gcic~~~~~~~~~~l~~~   98 (207)
T TIGR00073        19 KHGLVVLNFMSSPGSGKTTLIEKLIDNLKDEVKIAVIEGDVITKFDAERLRKYGAPAIQINTGKECHLDAHMVAHALEDL   98 (207)
T ss_pred             hcCcEEEEEECCCCCCHHHHHHHHHHHHhcCCeEEEEECCCCCcccHHHHHHcCCcEEEEcCCCcccCChHHHHHHHHHh
Confidence            3457889999999999999998887531100       0000 00 0000    0001110 0                 


Q ss_pred             --eEEEEEEEeCCCccccccccccCcCCCcEEEEEEeCCCchhHHHHHHHHHHHHhhhCCCCCEEEEeeCCcccCCcccc
Q 036449           52 --STVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLRDDKQFF  129 (197)
Q Consensus        52 --~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~~~ivv~nK~D~~~~~~~~  129 (197)
                        ....+.++++.|.-.   ....+.-..+..+.|+|+.+.......   ....   .  ..|.++++||+|+.....  
T Consensus        99 ~~~~~d~IiIEt~G~l~---~~~~~~~~~~~~i~Vvd~~~~d~~~~~---~~~~---~--~~a~iiv~NK~Dl~~~~~--  165 (207)
T TIGR00073        99 PLDDIDLLFIENVGNLV---CPADFDLGEHMRVVLLSVTEGDDKPLK---YPGM---F--KEADLIVINKADLAEAVG--  165 (207)
T ss_pred             ccCCCCEEEEecCCCcC---CCcccccccCeEEEEEecCcccchhhh---hHhH---H--hhCCEEEEEHHHccccch--
Confidence              123455777777210   001111234566778888765432111   1111   1  457899999999965321  


Q ss_pred             cCCCCCCcccHHHHHHHHHHhC-CCceEEeccCCCCCHHHHHHHHHHH
Q 036449          130 IDHPGAVPISTAQGEELRKLIG-APAYIECSSKTQQNVKAVFDAAIRV  176 (197)
Q Consensus       130 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~sa~~~~~i~~l~~~i~~~  176 (197)
                              .......+..+..+ ..+++++||+++.|++++++++.+.
T Consensus       166 --------~~~~~~~~~l~~~~~~~~i~~~Sa~~g~gv~~l~~~i~~~  205 (207)
T TIGR00073       166 --------FDVEKMKADAKKINPEAEIILMSLKTGEGLDEWLEFLEGQ  205 (207)
T ss_pred             --------hhHHHHHHHHHHhCCCCCEEEEECCCCCCHHHHHHHHHHh
Confidence                    11223333333332 2389999999999999999999875

HypB is implicated in insertion of nickel into the large subunit of NiFe hydrogenases.

>KOG0082 consensus G-protein alpha subunit (small G protein superfamily) [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms]

Probab=99.33  E-value=3.5e-11  Score=90.34  Aligned_cols=127  Identities=20%  Similarity=0.195  Sum_probs=82.7

Q ss_pred             EEEEEEeCCCccccccccccCcCCCcEEEEEEeCCCchhH-------HHH---HHHHHHHHhhhC-CCCCEEEEeeCCcc
Q 036449           54 VNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASY-------ENV---SKKWIPELKHYA-PGVPIILVGTKLDL  122 (197)
Q Consensus        54 ~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~-------~~~---~~~~~~~i~~~~-~~~~~ivv~nK~D~  122 (197)
                      ..+.++|.+||...+.-|.+.+.+++++|||++++.....       ..+   ..-+-..+.... .+.++|++.||.|+
T Consensus       195 ~~f~~~DvGGQRseRrKWihcFe~v~aviF~vslSeYdq~l~ED~~~NRM~eS~~LF~sI~n~~~F~~tsiiLFLNK~DL  274 (354)
T KOG0082|consen  195 LKFRMFDVGGQRSERKKWIHCFEDVTAVIFCVSLSEYDQVLEEDETTNRMHESLKLFESICNNKWFANTSIILFLNKKDL  274 (354)
T ss_pred             CceEEEeCCCcHHHhhhHHHhhcCCCEEEEEEehhhhhhhcccccchhHHHHHHHHHHHHhcCcccccCcEEEEeecHHH
Confidence            6788999999999999999999999999999999864331       111   112222222233 58999999999999


Q ss_pred             cCCcccc-------cCCCCCCcccHHHHHH-----HHHHhCCC----ceEEeccCCCCCHHHHHHHHHHHHcCCCc
Q 036449          123 RDDKQFF-------IDHPGAVPISTAQGEE-----LRKLIGAP----AYIECSSKTQQNVKAVFDAAIRVVLQPPK  182 (197)
Q Consensus       123 ~~~~~~~-------~~~~~~~~~~~~~~~~-----~~~~~~~~----~~~~~sa~~~~~i~~l~~~i~~~~~~~~~  182 (197)
                      -++.-..       .+..+.  ...+++..     |.+.+...    -...+.|.+-.+|+.+|..+...+.....
T Consensus       275 FeEKi~~~~~~~~Fpdy~G~--~~~~~a~~yI~~kF~~l~~~~~k~iy~h~T~AtDT~nv~~vf~av~d~Ii~~nl  348 (354)
T KOG0082|consen  275 FEEKIKKVPLTDCFPDYKGV--NTYEEAAKYIRKKFEELNKNKDKKIYVHFTCATDTQNVQFVFDAVTDTIIQNNL  348 (354)
T ss_pred             HHHHhccCchhhhCcCCCCC--CChHHHHHHHHHHHHHHhcccCCcceEEEEeeccHHHHHHHHHHHHHHHHHHHH
Confidence            7653211       111212  22333332     22222221    23457888889999999999888776543

>PF00735 Septin: Septin; InterPro: IPR000038 Septins constitute a eukaryotic family of guanine nucleotide-binding proteins, most of which polymerise to form filaments []

Probab=99.32  E-value=1e-10  Score=86.66  Aligned_cols=115  Identities=18%  Similarity=0.258  Sum_probs=67.9

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHhhCCCCCCC----------CCce-eeeeeEEEEECCeEEEEEEEeCCCccc--------
Q 036449            6 FIKCVTVGDGAVGKTCLLISYTSNTFPTDY----------VPTV-FDNFSANVVVNGSTVNLGLWDTAGQED--------   66 (197)
Q Consensus         6 ~~~i~v~G~~~~GKstli~~~~~~~~~~~~----------~~~~-~~~~~~~~~~~~~~~~~~i~D~~G~~~--------   66 (197)
                      .++|+|+|.+|+|||||++.|++.......          ..+. .........-++..+.+.++||||--.        
T Consensus         4 ~fnImVvG~sG~GKTTFIntL~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~l~e~~~~l~LtiiDTpGfGd~i~n~~~~   83 (281)
T PF00735_consen    4 NFNIMVVGESGLGKTTFINTLFNSDIISEDSSIPPPSASISRTLEIEERTVELEENGVKLNLTIIDTPGFGDNIDNSDCW   83 (281)
T ss_dssp             EEEEEEEECTTSSHHHHHHHHHTSS---------S------SCEEEEEEEEEEEETCEEEEEEEEEEC-CSSSSTHCHHH
T ss_pred             eEEEEEECCCCCCHHHHHHHHHhcccccccccccccccccccccceeeEEEEeccCCcceEEEEEeCCCccccccchhhh
Confidence            589999999999999999999986553321          0111 112223344467788999999999110        


Q ss_pred             ----------cc--------ccc-ccCcCCCcEEEEEEeCCC-chhHHHHHHHHHHHHhhhCCCCCEEEEeeCCcccCC
Q 036449           67 ----------YN--------RLR-PLSYRGADVFILAFSLIS-KASYENVSKKWIPELKHYAPGVPIILVGTKLDLRDD  125 (197)
Q Consensus        67 ----------~~--------~~~-~~~~~~~~~~i~v~d~~~-~~s~~~~~~~~~~~i~~~~~~~~~ivv~nK~D~~~~  125 (197)
                                |.        ..+ ...=...|+++|.++.+. +-+-.++  ..++.+...   +++|=|..|+|....
T Consensus        84 ~~I~~yI~~qf~~~l~eE~~~~R~~~~D~RVH~cLYfI~pt~~~L~~~Di--~~mk~Ls~~---vNvIPvIaKaD~lt~  157 (281)
T PF00735_consen   84 EPIVDYIESQFDSYLEEESKINRPRIEDTRVHACLYFIPPTGHGLKPLDI--EFMKRLSKR---VNVIPVIAKADTLTP  157 (281)
T ss_dssp             HHHHHHHHHHHHHHHHHHTSSS-TTS----EEEEEEEE-TTSSSS-HHHH--HHHHHHTTT---SEEEEEESTGGGS-H
T ss_pred             HHHHHHHHHHHHHHHHHhhcccccCcCCCCcceEEEEEcCCCccchHHHH--HHHHHhccc---ccEEeEEecccccCH
Confidence                      00        011 111124789999999864 3333343  455555555   789999999998653

Members of the family were first identified by genetic screening for Saccharomyces cerevisiae (Baker's yeast) mutants defective in cytokinesis []. Temperature-sensitive mutations in four genes, CDC3, CDC10, CDC11 and CDC12, were found to cause cell-cycle arrest and defects in bud growth and cytokinesis. The protein products of these genes localise at the division plane between mother and daughter cells, indicating a role in mother-daughter separation during cytokinesis []. Members of the family were therefore termed septins to reflect their role in septation and cell division. The identification of septin homologues in higher eukaryotes, which localise to the cleavage furrow in dividing cells, supports an orthologous function in cytokinesis. Septins have since been identified in most eukaryotes, except plants []. Septins are approximately 40-50 kDa in molecular mass, and typically comprise a conserved central core domain (more than 35% sequence identity between mammalian and yeast homologues) flanked by more divergent N- and C-termini. Most septins possess a P-loop motif in their N-terminal domain (which is characteristic of GTP-binding proteins), and a predicted C-terminal coiled-coil domain []. A number of septin interaction partners have been identified in yeast, many of which are components of the budding site selection machinery, kinase cascades or of the ubiquitination pathway. It has been proposed that septins may act as a scaffold that provides an interaction matrix for other proteins [, ]. In mammals, septins have been shown to regulate vesicle dynamics []. Mammalian septins have also been implicated in a variety of other cellular processes, including apoptosis, carcinogenesis and neurodegeneration []. This entry represents a variety of septins and homologous sequences involved in the cell division process.; GO: 0005525 GTP binding, 0007049 cell cycle; PDB: 2QAG_B 3FTQ_D 2QA5_A 2QNR_B 3TW4_A 3T5D_C.

>KOG0705 consensus GTPase-activating protein Centaurin gamma (contains Ras-like GTPase, PH and ankyrin repeat domains) [Signal transduction mechanisms]

Probab=99.32  E-value=4.5e-12  Score=98.51  Aligned_cols=161  Identities=25%  Similarity=0.385  Sum_probs=125.3

Q ss_pred             ceeEEEEEcCCCCCHHHHHHHHhhCCCCCCCCCceeeeeeEEEEECCeEEEEEEEeCCCccccccccccCcCCCcEEEEE
Q 036449            5 RFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILA   84 (197)
Q Consensus         5 ~~~~i~v~G~~~~GKstli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v   84 (197)
                      ..+|+.++|..++|||+|+.+++.+.+... ..+.+..+..++.+++....+.+.|-+|...     ..|..++|++|||
T Consensus        29 pelk~givg~~~sgktalvhr~ltgty~~~-e~~e~~~~kkE~vv~gqs~lLlirdeg~~~~-----aQft~wvdavIfv  102 (749)
T KOG0705|consen   29 PELKLGIVGTSQSGKTALVHRYLTGTYTQD-ESPEGGRFKKEVVVDGQSHLLLIRDEGGHPD-----AQFCQWVDAVVFV  102 (749)
T ss_pred             chhheeeeecccCCceeeeeeeccceeccc-cCCcCccceeeEEeeccceEeeeecccCCch-----hhhhhhccceEEE
Confidence            458999999999999999999999988765 4555678888888888888888999888433     3456779999999


Q ss_pred             EeCCCchhHHHHHHHHHHHHhhhC--CCCCEEEEeeCCcccCCcccccCCCCCCcccHHHHHHHHHHhCCCceEEeccCC
Q 036449           85 FSLISKASYENVSKKWIPELKHYA--PGVPIILVGTKLDLRDDKQFFIDHPGAVPISTAQGEELRKLIGAPAYIECSSKT  162 (197)
Q Consensus        85 ~d~~~~~s~~~~~~~~~~~i~~~~--~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~  162 (197)
                      +.+.+..+++.+ ..+...+....  ..+|+++++++.-.....        .+.+....+++++.++....+|++++.+
T Consensus       103 f~~~d~~s~q~v-~~l~~~l~~~r~r~~i~l~lvgtqd~iS~~~--------~rv~~da~~r~l~~~~krcsy~et~aty  173 (749)
T KOG0705|consen  103 FSVEDEQSFQAV-QALAHEMSSYRNISDLPLILVGTQDHISAKR--------PRVITDDRARQLSAQMKRCSYYETCATY  173 (749)
T ss_pred             EEeccccCHHHH-HHHHhhcccccccccchHHhhcCcchhhccc--------ccccchHHHHHHHHhcCccceeecchhh
Confidence            999999999988 55555555433  478888888765443322        2335566667776666666899999999


Q ss_pred             CCCHHHHHHHHHHHHcCC
Q 036449          163 QQNVKAVFDAAIRVVLQP  180 (197)
Q Consensus       163 ~~~i~~l~~~i~~~~~~~  180 (197)
                      |.++...|+.+..++...
T Consensus       174 Glnv~rvf~~~~~k~i~~  191 (749)
T KOG0705|consen  174 GLNVERVFQEVAQKIVQL  191 (749)
T ss_pred             hhhHHHHHHHHHHHHHHH
Confidence            999999999999877655

>PTZ00258 GTP-binding protein; Provisional

Probab=99.31  E-value=4.1e-11  Score=92.01  Aligned_cols=84  Identities=19%  Similarity=0.133  Sum_probs=55.5

Q ss_pred             ceeEEEEEcCCCCCHHHHHHHHhhCCC-CCCCCCceeeeeeEEEEECCe---------------EEEEEEEeCCCccccc
Q 036449            5 RFIKCVTVGDGAVGKTCLLISYTSNTF-PTDYVPTVFDNFSANVVVNGS---------------TVNLGLWDTAGQEDYN   68 (197)
Q Consensus         5 ~~~~i~v~G~~~~GKstli~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~---------------~~~~~i~D~~G~~~~~   68 (197)
                      ..++|.++|.|++|||||++++.+... ..+++.++.......+.+.+.               ..++.++|+||...-.
T Consensus        20 ~~~kvgIVG~PNvGKSTLfnaLt~~~~~v~n~pftTi~p~~g~v~~~d~r~~~l~~~~~~~~~~~aqi~lvDtpGLv~ga   99 (390)
T PTZ00258         20 NNLKMGIVGLPNVGKSTTFNALCKQQVPAENFPFCTIDPNTARVNVPDERFDWLCKHFKPKSIVPAQLDITDIAGLVKGA   99 (390)
T ss_pred             CCcEEEEECCCCCChHHHHHHHhcCcccccCCCCCcccceEEEEecccchhhHHHHHcCCcccCCCCeEEEECCCcCcCC
Confidence            458999999999999999999987554 345555553333333333321               2358899999953211


Q ss_pred             -------cccccCcCCCcEEEEEEeCC
Q 036449           69 -------RLRPLSYRGADVFILAFSLI   88 (197)
Q Consensus        69 -------~~~~~~~~~~~~~i~v~d~~   88 (197)
                             ......++.+|++++|+|..
T Consensus       100 ~~g~gLg~~fL~~Ir~aD~il~VVd~f  126 (390)
T PTZ00258        100 SEGEGLGNAFLSHIRAVDGIYHVVRAF  126 (390)
T ss_pred             cchhHHHHHHHHHHHHCCEEEEEEeCC
Confidence                   11122356799999999973

>KOG0458 consensus Elongation factor 1 alpha [Translation, ribosomal structure and biogenesis]

Probab=99.29  E-value=1.1e-10  Score=91.59  Aligned_cols=159  Identities=15%  Similarity=0.136  Sum_probs=96.6

Q ss_pred             CceeEEEEEcCCCCCHHHHHHHHhhC--CCCC------------------------CCCCce---eeee-eEEEEECCeE
Q 036449            4 SRFIKCVTVGDGAVGKTCLLISYTSN--TFPT------------------------DYVPTV---FDNF-SANVVVNGST   53 (197)
Q Consensus         4 ~~~~~i~v~G~~~~GKstli~~~~~~--~~~~------------------------~~~~~~---~~~~-~~~~~~~~~~   53 (197)
                      ...++.+++|+..+|||||+.+++..  ....                        ......   +... .....++...
T Consensus       175 k~~l~lvv~GhVdaGKSTLmG~lLydLg~i~~~~m~kl~~es~~~Gk~Sf~yawiLDeT~eERerGvTm~v~~~~fes~~  254 (603)
T KOG0458|consen  175 KDHLNLVVLGHVDAGKSTLMGHLLYDLGEISSRSMHKLERESKNLGKSSFAYAWILDETKEERERGVTMDVKTTWFESKS  254 (603)
T ss_pred             ccceEEEEEeccccchhhhhhHHHHHhcCccHHHHHHHHHHHHhcCCcceeeeEEeccchhhhhcceeEEeeeEEEecCc
Confidence            35689999999999999999776631  1100                        000000   1111 1222344556


Q ss_pred             EEEEEEeCCCccccccccccCcCCCcEEEEEEeCCCch---hHHHH--HHHHHHHHhhhCCCCCEEEEeeCCcccCCccc
Q 036449           54 VNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKA---SYENV--SKKWIPELKHYAPGVPIILVGTKLDLRDDKQF  128 (197)
Q Consensus        54 ~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~---s~~~~--~~~~~~~i~~~~~~~~~ivv~nK~D~~~~~~~  128 (197)
                      ..+++.|.||+..|-.........+|++++|+|.+..+   .|+..  .++....++.. .-..++|++||+|+..+.+ 
T Consensus       255 ~~~tliDaPGhkdFi~nmi~g~sqaD~avLvvd~s~~~FE~gfd~~gQtrEha~llr~L-gi~qlivaiNKmD~V~Wsq-  332 (603)
T KOG0458|consen  255 KIVTLIDAPGHKDFIPNMISGASQADVAVLVVDASTGEFESGFDPGGQTREHALLLRSL-GISQLIVAINKMDLVSWSQ-  332 (603)
T ss_pred             eeEEEecCCCccccchhhhccccccceEEEEEECCcchhhhccCCCCchHHHHHHHHHc-CcceEEEEeecccccCccH-
Confidence            77899999999999988888889999999999997531   11100  01112222222 1356889999999988754 


Q ss_pred             ccCCCCCCcccHHHHHHHH-HHhCC----CceEEeccCCCCCHHHH
Q 036449          129 FIDHPGAVPISTAQGEELR-KLIGA----PAYIECSSKTQQNVKAV  169 (197)
Q Consensus       129 ~~~~~~~~~~~~~~~~~~~-~~~~~----~~~~~~sa~~~~~i~~l  169 (197)
                           .+..........|. +..|+    ..|+++|+.+|+|+...
T Consensus       333 -----~RF~eIk~~l~~fL~~~~gf~es~v~FIPiSGl~GeNL~k~  373 (603)
T KOG0458|consen  333 -----DRFEEIKNKLSSFLKESCGFKESSVKFIPISGLSGENLIKI  373 (603)
T ss_pred             -----HHHHHHHHHHHHHHHHhcCcccCCcceEecccccCCccccc
Confidence                 01111112223333 33332    26999999999987654

>PF00350 Dynamin_N: Dynamin family; InterPro: IPR001401 Membrane transport between compartments in eukaryotic cells requires proteins that allow the budding and scission of nascent cargo vesicles from one compartment and their targeting and fusion with another

Probab=99.28  E-value=5.3e-11  Score=82.08  Aligned_cols=62  Identities=21%  Similarity=0.138  Sum_probs=44.9

Q ss_pred             EEEEeCCCccc----cccccccCcCCCcEEEEEEeCCCchhHHHHHHHHHHHHhhhCCCCCEEEEeeCC
Q 036449           56 LGLWDTAGQED----YNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKL  120 (197)
Q Consensus        56 ~~i~D~~G~~~----~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~~~ivv~nK~  120 (197)
                      +.|+|+||...    ....+..++..+|++|+|.+.+...+-.+. ..+.......  ...+++|.||.
T Consensus       103 ~~lvDtPG~~~~~~~~~~~~~~~~~~~d~vi~V~~~~~~~~~~~~-~~l~~~~~~~--~~~~i~V~nk~  168 (168)
T PF00350_consen  103 LTLVDTPGLNSTNSEHTEITEEYLPKADVVIFVVDANQDLTESDM-EFLKQMLDPD--KSRTIFVLNKA  168 (168)
T ss_dssp             EEEEEEEEBHSSHTTTSHHHHHHHSTTEEEEEEEETTSTGGGHHH-HHHHHHHTTT--CSSEEEEEE-G
T ss_pred             eEEEeCCccccchhhhHHHHHHhhccCCEEEEEeccCcccchHHH-HHHHHHhcCC--CCeEEEEEcCC
Confidence            77999999643    234566678999999999999987666655 5666666555  44588998984

Dynamins are large GTPases that belong to a protein superfamily [] that, in eukaryotic cells, includes classical dynamins, dynamin-like proteins, OPA1, Mx proteins, mitofusins and guanylate-binding proteins/atlastins [, , , ], and are involved in the scission of a wide range of vesicles and organelles. They play a role in many processes including budding of transport vesicles, division of organelles, cytokinesis and pathogen resistance. The minimal distinguishing architectural features that are common to all dynamins and are distinct from other GTPases are the structure of the large GTPase domain (300 amino acids) and the presence of two additional domains; the middle domain and the GTPase effector domain (GED), which are involved in oligomerization and regulation of the GTPase activity. This entry represents the GTPase domain, containing the GTP-binding motifs that are needed for guanine-nucleotide binding and hydrolysis. The conservation of these motifs is absolute except for the the final motif in guanylate-binding proteins. The GTPase catalytic activity can be stimulated by oligomerisation of the protein, which is mediated by interactions between the GTPase domain, the middle domain and the GED.; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 1JWY_B 1JX2_B 3ZVR_A 2AKA_B 3L43_B 2X2F_D 2X2E_D 3SNH_A 3ZYS_D 3ZYC_D ....

>KOG3887 consensus Predicted small GTPase involved in nuclear protein import [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.27  E-value=9.3e-12  Score=87.76  Aligned_cols=169  Identities=14%  Similarity=0.190  Sum_probs=98.1

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhhCCCCCCCCCceeeeeeE-EEEECCeEEEEEEEeCCCcccc-cc--ccccCcCCCcEEE
Q 036449            7 IKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSA-NVVVNGSTVNLGLWDTAGQEDY-NR--LRPLSYRGADVFI   82 (197)
Q Consensus         7 ~~i~v~G~~~~GKstli~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~i~D~~G~~~~-~~--~~~~~~~~~~~~i   82 (197)
                      .+|+++|...+||||+.+..+.+..+.+... ...+... .-.+.+.-+.+++||.|||-.+ ..  -....++.+.+.|
T Consensus        28 p~ilLMG~rRsGKsSI~KVVFhkMsPneTlf-lESTski~~d~is~sfinf~v~dfPGQ~~~Fd~s~D~e~iF~~~gALi  106 (347)
T KOG3887|consen   28 PRILLMGLRRSGKSSIQKVVFHKMSPNETLF-LESTSKITRDHISNSFINFQVWDFPGQMDFFDPSFDYEMIFRGVGALI  106 (347)
T ss_pred             ceEEEEeecccCcchhhheeeeccCCCceeE-eeccCcccHhhhhhhhcceEEeecCCccccCCCccCHHHHHhccCeEE
Confidence            6799999999999999977776543322110 0101000 0112334578999999998644 22  2244688899999


Q ss_pred             EEEeCCCchhHHHHHHHHHHHHhh---hCCCCCEEEEeeCCcccCCcccccCCCCCCcccHHHHHHHHHHhC---CCceE
Q 036449           83 LAFSLISKASYENVSKKWIPELKH---YAPGVPIILVGTKLDLRDDKQFFIDHPGAVPISTAQGEELRKLIG---APAYI  156 (197)
Q Consensus        83 ~v~d~~~~~s~~~~~~~~~~~i~~---~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~  156 (197)
                      +|+|+.+.  +.++...+...+..   -.|++.+=++..|.|...+........+......+   +++ ..|   ..--+
T Consensus       107 fvIDaQdd--y~eala~L~~~v~raykvNp~in~EVfiHKvDGLsdd~kietqrdI~qr~~d---~l~-d~gle~v~vsf  180 (347)
T KOG3887|consen  107 FVIDAQDD--YMEALARLHMTVERAYKVNPNINFEVFIHKVDGLSDDFKIETQRDIHQRTND---ELA-DAGLEKVQVSF  180 (347)
T ss_pred             EEEechHH--HHHHHHHHHHHhhheeecCCCceEEEEEEeccCCchhhhhhhHHHHHHHhhH---HHH-hhhhccceEEE
Confidence            99998754  22221333333332   23899999999999987654321111111111111   121 122   11123


Q ss_pred             EeccCCCCCHHHHHHHHHHHHcCCCc
Q 036449          157 ECSSKTQQNVKAVFDAAIRVVLQPPK  182 (197)
Q Consensus       157 ~~sa~~~~~i~~l~~~i~~~~~~~~~  182 (197)
                      ...+.-.+++.|.|..+++.+..+-.
T Consensus       181 ~LTSIyDHSIfEAFSkvVQkLipqLp  206 (347)
T KOG3887|consen  181 YLTSIYDHSIFEAFSKVVQKLIPQLP  206 (347)
T ss_pred             EEeeecchHHHHHHHHHHHHHhhhch
Confidence            44455578899999999998876543

>COG1217 TypA Predicted membrane GTPase involved in stress response [Signal transduction mechanisms]

Probab=99.27  E-value=1.8e-10  Score=88.36  Aligned_cols=162  Identities=17%  Similarity=0.146  Sum_probs=107.2

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhhCC--CCCCCCCce------------eee-eeEEEEECCeEEEEEEEeCCCcccccccc
Q 036449            7 IKCVTVGDGAVGKTCLLISYTSNT--FPTDYVPTV------------FDN-FSANVVVNGSTVNLGLWDTAGQEDYNRLR   71 (197)
Q Consensus         7 ~~i~v~G~~~~GKstli~~~~~~~--~~~~~~~~~------------~~~-~~~~~~~~~~~~~~~i~D~~G~~~~~~~~   71 (197)
                      =+|+++-+...|||||+..++...  |.....-..            +.+ ..+...+....+.++++|||||-+|....
T Consensus         6 RNIAIIAHVDHGKTTLVD~LLkQSGtf~~~e~v~ERvMDSnDlEkERGITILaKnTav~~~~~~INIvDTPGHADFGGEV   85 (603)
T COG1217           6 RNIAIIAHVDHGKTTLVDALLKQSGTFREREEVAERVMDSNDLEKERGITILAKNTAVNYNGTRINIVDTPGHADFGGEV   85 (603)
T ss_pred             ceeEEEEEecCCcchHHHHHHhhccccccccchhhhhcCccchhhhcCcEEEeccceeecCCeEEEEecCCCcCCccchh
Confidence            479999999999999999998643  322111110            111 11122233344788999999999999999


Q ss_pred             ccCcCCCcEEEEEEeCCCchhHHHHHHHHHHHHhhhCCCCCEEEEeeCCcccCCcccccCCCCCCcccHHHHHHHHHHhC
Q 036449           72 PLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPISTAQGEELRKLIG  151 (197)
Q Consensus        72 ~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  151 (197)
                      +..+.-+|++++++|+..+.-.+.- --+.+.+.   .+.+-|+|.||+|....+.         ..-.++...+...++
T Consensus        86 ERvl~MVDgvlLlVDA~EGpMPQTr-FVlkKAl~---~gL~PIVVvNKiDrp~Arp---------~~Vvd~vfDLf~~L~  152 (603)
T COG1217          86 ERVLSMVDGVLLLVDASEGPMPQTR-FVLKKALA---LGLKPIVVINKIDRPDARP---------DEVVDEVFDLFVELG  152 (603)
T ss_pred             hhhhhhcceEEEEEEcccCCCCchh-hhHHHHHH---cCCCcEEEEeCCCCCCCCH---------HHHHHHHHHHHHHhC
Confidence            9999999999999999886433221 11122222   2577889999999976542         112234444444443


Q ss_pred             C------CceEEeccCCCC----------CHHHHHHHHHHHHcCCC
Q 036449          152 A------PAYIECSSKTQQ----------NVKAVFDAAIRVVLQPP  181 (197)
Q Consensus       152 ~------~~~~~~sa~~~~----------~i~~l~~~i~~~~~~~~  181 (197)
                      +      .|++..|+..|.          ++.-||+.|++.+..+.
T Consensus       153 A~deQLdFPivYAS~~~G~a~~~~~~~~~~m~pLfe~I~~hvp~P~  198 (603)
T COG1217         153 ATDEQLDFPIVYASARNGTASLDPEDEADDMAPLFETILDHVPAPK  198 (603)
T ss_pred             CChhhCCCcEEEeeccCceeccCccccccchhHHHHHHHHhCCCCC
Confidence            2      177888887664          68899999999887664

>PRK07560 elongation factor EF-2; Reviewed

Probab=99.26  E-value=2.8e-11  Score=100.92  Aligned_cols=117  Identities=15%  Similarity=0.081  Sum_probs=76.9

Q ss_pred             CceeEEEEEcCCCCCHHHHHHHHhhCCC--CCCCCC--cee----------eee---eEEE--EECCeEEEEEEEeCCCc
Q 036449            4 SRFIKCVTVGDGAVGKTCLLISYTSNTF--PTDYVP--TVF----------DNF---SANV--VVNGSTVNLGLWDTAGQ   64 (197)
Q Consensus         4 ~~~~~i~v~G~~~~GKstli~~~~~~~~--~~~~~~--~~~----------~~~---~~~~--~~~~~~~~~~i~D~~G~   64 (197)
                      ++.-+|+++|+.++|||||+.+++...-  ......  +..          ...   ...+  ..++....+.++||||+
T Consensus        18 ~~iRni~iigh~d~GKTTL~e~ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~i~liDtPG~   97 (731)
T PRK07560         18 EQIRNIGIIAHIDHGKTTLSDNLLAGAGMISEELAGEQLALDFDEEEQARGITIKAANVSMVHEYEGKEYLINLIDTPGH   97 (731)
T ss_pred             hcccEEEEEEeCCCCHHHHHHHHHHHcCCcchhhcCcceecCccHHHHHhhhhhhccceEEEEEecCCcEEEEEEcCCCc
Confidence            3455799999999999999999875321  110000  000          000   0011  12444678899999999


Q ss_pred             cccccccccCcCCCcEEEEEEeCCCchhHHHHHHHHHHHHhhhCCCCCEEEEeeCCcccC
Q 036449           65 EDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLRD  124 (197)
Q Consensus        65 ~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~~~ivv~nK~D~~~  124 (197)
                      .+|.......+..+|++|+|+|...+...+.. ..|. .....  +.|.++++||+|...
T Consensus        98 ~df~~~~~~~l~~~D~avlVvda~~g~~~~t~-~~~~-~~~~~--~~~~iv~iNK~D~~~  153 (731)
T PRK07560         98 VDFGGDVTRAMRAVDGAIVVVDAVEGVMPQTE-TVLR-QALRE--RVKPVLFINKVDRLI  153 (731)
T ss_pred             cChHHHHHHHHHhcCEEEEEEECCCCCCccHH-HHHH-HHHHc--CCCeEEEEECchhhc
Confidence            99887777788899999999999876443332 2332 22222  568899999999863

>COG5257 GCD11 Translation initiation factor 2, gamma subunit (eIF-2gamma; GTPase) [Translation, ribosomal structure and biogenesis]

Probab=99.21  E-value=1.5e-10  Score=84.88  Aligned_cols=162  Identities=18%  Similarity=0.162  Sum_probs=103.2

Q ss_pred             ceeEEEEEcCCCCCHHHHHHHHhhCCC---CC----------CCCCce-e---e-----eeeE--EEEE----CCeEEEE
Q 036449            5 RFIKCVTVGDGAVGKTCLLISYTSNTF---PT----------DYVPTV-F---D-----NFSA--NVVV----NGSTVNL   56 (197)
Q Consensus         5 ~~~~i~v~G~~~~GKstli~~~~~~~~---~~----------~~~~~~-~---~-----~~~~--~~~~----~~~~~~~   56 (197)
                      ..++|-++|+..-|||||..++.+---   ++          .|..+. .   +     .+..  .+..    ..-...+
T Consensus         9 p~vNIG~vGHVdHGKtTlv~AlsGvwT~~hseElkRgitIkLGYAd~~i~kC~~c~~~~~y~~~~~C~~cg~~~~l~R~V   88 (415)
T COG5257           9 PEVNIGMVGHVDHGKTTLTKALSGVWTDRHSEELKRGITIKLGYADAKIYKCPECYRPECYTTEPKCPNCGAETELVRRV   88 (415)
T ss_pred             cceEeeeeeecccchhhheehhhceeeechhHHHhcCcEEEeccccCceEeCCCCCCCcccccCCCCCCCCCCccEEEEE
Confidence            479999999999999999988875211   11          011111 0   0     0000  0000    0123457


Q ss_pred             EEEeCCCccccccccccCcCCCcEEEEEEeCCCc----hhHHHHHHHHHHHHhhhCCCCCEEEEeeCCcccCCcccccCC
Q 036449           57 GLWDTAGQEDYNRLRPLSYRGADVFILAFSLISK----ASYENVSKKWIPELKHYAPGVPIILVGTKLDLRDDKQFFIDH  132 (197)
Q Consensus        57 ~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~----~s~~~~~~~~~~~i~~~~~~~~~ivv~nK~D~~~~~~~~~~~  132 (197)
                      .|.|.|||+-.-+.......-.|++++|+.++.+    ++-+.+  .-++.+.    -..++++=||.|+.....     
T Consensus        89 SfVDaPGHe~LMATMLsGAAlMDgAlLvIaANEpcPQPQT~EHl--~AleIig----ik~iiIvQNKIDlV~~E~-----  157 (415)
T COG5257          89 SFVDAPGHETLMATMLSGAALMDGALLVIAANEPCPQPQTREHL--MALEIIG----IKNIIIVQNKIDLVSRER-----  157 (415)
T ss_pred             EEeeCCchHHHHHHHhcchhhhcceEEEEecCCCCCCCchHHHH--HHHhhhc----cceEEEEecccceecHHH-----
Confidence            7999999987766555555567999999999864    333332  1123332    246888999999965432     


Q ss_pred             CCCCcccHHHHHHHHHHh---CCCceEEeccCCCCCHHHHHHHHHHHHcCCC
Q 036449          133 PGAVPISTAQGEELRKLI---GAPAYIECSSKTQQNVKAVFDAAIRVVLQPP  181 (197)
Q Consensus       133 ~~~~~~~~~~~~~~~~~~---~~~~~~~~sa~~~~~i~~l~~~i~~~~~~~~  181 (197)
                         ....+++.++|.+.-   +. |++++||..+.|++-+++.|.+.+..+.
T Consensus       158 ---AlE~y~qIk~FvkGt~Ae~a-PIIPiSA~~~~NIDal~e~i~~~IptP~  205 (415)
T COG5257         158 ---ALENYEQIKEFVKGTVAENA-PIIPISAQHKANIDALIEAIEKYIPTPE  205 (415)
T ss_pred             ---HHHHHHHHHHHhcccccCCC-ceeeehhhhccCHHHHHHHHHHhCCCCc
Confidence               113445555665532   33 8999999999999999999999887654

>COG3276 SelB Selenocysteine-specific translation elongation factor [Translation, ribosomal structure and biogenesis]

Probab=99.20  E-value=1.3e-10  Score=88.69  Aligned_cols=158  Identities=18%  Similarity=0.090  Sum_probs=102.9

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhhCCCCCC----CCCceeeeeeEEEEECCeEEEEEEEeCCCccccccccccCcCCCcEEE
Q 036449            7 IKCVTVGDGAVGKTCLLISYTSNTFPTD----YVPTVFDNFSANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFI   82 (197)
Q Consensus         7 ~~i~v~G~~~~GKstli~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i   82 (197)
                      +.|+..|+-..|||||+..+.+.....-    -..++.+.  .....+..+..+.|+|.||++++-+.....+...|.++
T Consensus         1 mii~t~GhidHgkT~L~~altg~~~d~l~EekKRG~TiDl--g~~y~~~~d~~~~fIDvpgh~~~i~~miag~~~~d~al   78 (447)
T COG3276           1 MIIGTAGHIDHGKTTLLKALTGGVTDRLPEEKKRGITIDL--GFYYRKLEDGVMGFIDVPGHPDFISNLLAGLGGIDYAL   78 (447)
T ss_pred             CeEEEeeeeeccchhhhhhhcccccccchhhhhcCceEee--eeEeccCCCCceEEeeCCCcHHHHHHHHhhhcCCceEE
Confidence            3578899999999999999987543211    11111111  11112223347889999999999887777788899999


Q ss_pred             EEEeCCCchhHHHHHHHHHHHHhhhCCCCCEEEEeeCCcccCCcccccCCCCCCcccHHHHHHHHHHhCCCceEEeccCC
Q 036449           83 LAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPISTAQGEELRKLIGAPAYIECSSKT  162 (197)
Q Consensus        83 ~v~d~~~~~s~~~~~~~~~~~i~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~  162 (197)
                      +|+|.+++-..+..  +.+..+... .....++|+||+|..++...       .+...+....++  +...+++.+|+++
T Consensus        79 LvV~~deGl~~qtg--EhL~iLdll-gi~~giivltk~D~~d~~r~-------e~~i~~Il~~l~--l~~~~i~~~s~~~  146 (447)
T COG3276          79 LVVAADEGLMAQTG--EHLLILDLL-GIKNGIIVLTKADRVDEARI-------EQKIKQILADLS--LANAKIFKTSAKT  146 (447)
T ss_pred             EEEeCccCcchhhH--HHHHHHHhc-CCCceEEEEeccccccHHHH-------HHHHHHHHhhcc--ccccccccccccc
Confidence            99999766554443  223333333 12345999999999764210       001111112222  3344789999999


Q ss_pred             CCCHHHHHHHHHHHHc
Q 036449          163 QQNVKAVFDAAIRVVL  178 (197)
Q Consensus       163 ~~~i~~l~~~i~~~~~  178 (197)
                      |.||+++.+.|.+...
T Consensus       147 g~GI~~Lk~~l~~L~~  162 (447)
T COG3276         147 GRGIEELKNELIDLLE  162 (447)
T ss_pred             CCCHHHHHHHHHHhhh
Confidence            9999999999999885

>PRK09601 GTP-binding protein YchF; Reviewed

Probab=99.18  E-value=4.8e-10  Score=85.25  Aligned_cols=82  Identities=21%  Similarity=0.207  Sum_probs=54.4

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhhCCC-CCCCCCceeeeeeEEEEECCeE---------------EEEEEEeCCCccccc--
Q 036449            7 IKCVTVGDGAVGKTCLLISYTSNTF-PTDYVPTVFDNFSANVVVNGST---------------VNLGLWDTAGQEDYN--   68 (197)
Q Consensus         7 ~~i~v~G~~~~GKstli~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~---------------~~~~i~D~~G~~~~~--   68 (197)
                      ++|.++|.|++|||||++++.+... ..+++.|+.+.......+.+..               ..+.+.|+||...-.  
T Consensus         3 ~~vgIVG~PNvGKSTLfnaLt~~~~~v~nypftTi~p~~G~~~v~d~r~~~l~~~~~p~~~~~a~i~lvD~pGL~~~a~~   82 (364)
T PRK09601          3 LKCGIVGLPNVGKSTLFNALTKAGAEAANYPFCTIEPNVGVVPVPDPRLDKLAEIVKPKKIVPATIEFVDIAGLVKGASK   82 (364)
T ss_pred             cEEEEECCCCCCHHHHHHHHhCCCCeecccccccccceEEEEEeccccchhhHHhcCCccccCceEEEEECCCCCCCCCh
Confidence            7899999999999999999997663 2445555533333333333211               258899999953211  


Q ss_pred             --c---ccccCcCCCcEEEEEEeCC
Q 036449           69 --R---LRPLSYRGADVFILAFSLI   88 (197)
Q Consensus        69 --~---~~~~~~~~~~~~i~v~d~~   88 (197)
                        .   .....++.+|++++|+|..
T Consensus        83 g~glg~~fL~~i~~aD~li~VVd~f  107 (364)
T PRK09601         83 GEGLGNQFLANIREVDAIVHVVRCF  107 (364)
T ss_pred             HHHHHHHHHHHHHhCCEEEEEEeCC
Confidence              1   1122367899999999984

>KOG1486 consensus GTP-binding protein DRG2 (ODN superfamily) [Signal transduction mechanisms]

Probab=99.18  E-value=2.4e-09  Score=76.27  Aligned_cols=91  Identities=23%  Similarity=0.264  Sum_probs=66.7

Q ss_pred             CceeEEEEEcCCCCCHHHHHHHHhhCCC-CCCCCCceeeeeeEEEEECCeEEEEEEEeCCCcccc-------ccccccCc
Q 036449            4 SRFIKCVTVGDGAVGKTCLLISYTSNTF-PTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQEDY-------NRLRPLSY   75 (197)
Q Consensus         4 ~~~~~i~v~G~~~~GKstli~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~-------~~~~~~~~   75 (197)
                      +..-||+++|-|.+|||||+..+..... ...|..|+.......+.+++  -.+++.|.||.-+=       .+......
T Consensus        60 sGdaRValIGfPSVGKStlLs~iT~T~SeaA~yeFTTLtcIpGvi~y~g--a~IQllDLPGIieGAsqgkGRGRQviavA  137 (364)
T KOG1486|consen   60 SGDARVALIGFPSVGKSTLLSKITSTHSEAASYEFTTLTCIPGVIHYNG--ANIQLLDLPGIIEGASQGKGRGRQVIAVA  137 (364)
T ss_pred             cCCeEEEEecCCCccHHHHHHHhhcchhhhhceeeeEEEeecceEEecC--ceEEEecCcccccccccCCCCCceEEEEe
Confidence            4457899999999999999999986543 35566777666677777777  45679999994221       12334456


Q ss_pred             CCCcEEEEEEeCCCchhHHHH
Q 036449           76 RGADVFILAFSLISKASYENV   96 (197)
Q Consensus        76 ~~~~~~i~v~d~~~~~s~~~~   96 (197)
                      +.+|.+++|.|++..+.-..+
T Consensus       138 rtaDlilMvLDatk~e~qr~~  158 (364)
T KOG1486|consen  138 RTADLILMVLDATKSEDQREI  158 (364)
T ss_pred             ecccEEEEEecCCcchhHHHH
Confidence            789999999999987654433

>COG0378 HypB Ni2+-binding GTPase involved in regulation of expression and maturation of urease and hydrogenase [Posttranslational modification, protein turnover, chaperones / Transcription]

Probab=99.16  E-value=7.2e-10  Score=76.12  Aligned_cols=81  Identities=14%  Similarity=0.015  Sum_probs=54.5

Q ss_pred             cEEEEEEeCCCchhHHHHHHHHHHHHhhhCCCCCEEEEeeCCcccCCcccccCCCCCCcccHHHHHHHHHHh-CCCceEE
Q 036449           79 DVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPISTAQGEELRKLI-GAPAYIE  157 (197)
Q Consensus        79 ~~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~  157 (197)
                      +.-|+|+|++.++...   .+-.+.+.     ..=++|.||.|+.+...          .+.+...+-+++. +..++++
T Consensus       119 ~~~v~VidvteGe~~P---~K~gP~i~-----~aDllVInK~DLa~~v~----------~dlevm~~da~~~np~~~ii~  180 (202)
T COG0378         119 HLRVVVIDVTEGEDIP---RKGGPGIF-----KADLLVINKTDLAPYVG----------ADLEVMARDAKEVNPEAPIIF  180 (202)
T ss_pred             ceEEEEEECCCCCCCc---ccCCCcee-----EeeEEEEehHHhHHHhC----------ccHHHHHHHHHHhCCCCCEEE
Confidence            4889999998875332   11111111     12378999999987654          4445444444443 3348999


Q ss_pred             eccCCCCCHHHHHHHHHHHH
Q 036449          158 CSSKTQQNVKAVFDAAIRVV  177 (197)
Q Consensus       158 ~sa~~~~~i~~l~~~i~~~~  177 (197)
                      +|+++|+|++++++++...+
T Consensus       181 ~n~ktg~G~~~~~~~i~~~~  200 (202)
T COG0378         181 TNLKTGEGLDEWLRFIEPQA  200 (202)
T ss_pred             EeCCCCcCHHHHHHHHHhhc
Confidence            99999999999999988754

>COG0050 TufB GTPases - translation elongation factors [Translation, ribosomal structure and biogenesis]

Probab=99.16  E-value=3.8e-10  Score=81.96  Aligned_cols=166  Identities=21%  Similarity=0.238  Sum_probs=101.2

Q ss_pred             CceeEEEEEcCCCCCHHHHHHHHhhC---CC-------CC-CCCCce---eeee-eEEEEECCeEEEEEEEeCCCccccc
Q 036449            4 SRFIKCVTVGDGAVGKTCLLISYTSN---TF-------PT-DYVPTV---FDNF-SANVVVNGSTVNLGLWDTAGQEDYN   68 (197)
Q Consensus         4 ~~~~~i~v~G~~~~GKstli~~~~~~---~~-------~~-~~~~~~---~~~~-~~~~~~~~~~~~~~i~D~~G~~~~~   68 (197)
                      ...++|..+|+.+-|||||..++...   .+       .. ...|..   +... .....++-....+-..|+|||.+|-
T Consensus        10 kphVNigtiGHvdHGKTTLtaAit~~la~~~~~~~~~y~~id~aPeEk~rGITIntahveyet~~rhyahVDcPGHaDYv   89 (394)
T COG0050          10 KPHVNVGTIGHVDHGKTTLTAAITTVLAKKGGAEAKAYDQIDNAPEEKARGITINTAHVEYETANRHYAHVDCPGHADYV   89 (394)
T ss_pred             CCeeEEEEeccccCchhhHHHHHHHHHHhhccccccchhhhccCchHhhcCceeccceeEEecCCceEEeccCCChHHHH
Confidence            46799999999999999999776531   10       00 001111   1111 1222232223445589999999998


Q ss_pred             cccccCcCCCcEEEEEEeCCCchhHHHHHHHHHHHHhhhCCCCC-EEEEeeCCcccCCcccccCCCCCCcccHHHHHHHH
Q 036449           69 RLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVP-IILVGTKLDLRDDKQFFIDHPGAVPISTAQGEELR  147 (197)
Q Consensus        69 ~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~~-~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~  147 (197)
                      ........+.|+.|+|+.+++..-.+...+-++   .+.. +.| ++++.||+|+.+..+       ..++-..+.+++.
T Consensus        90 KNMItgAaqmDgAILVVsA~dGpmPqTrEHiLl---arqv-Gvp~ivvflnK~Dmvdd~e-------llelVemEvreLL  158 (394)
T COG0050          90 KNMITGAAQMDGAILVVAATDGPMPQTREHILL---ARQV-GVPYIVVFLNKVDMVDDEE-------LLELVEMEVRELL  158 (394)
T ss_pred             HHHhhhHHhcCccEEEEEcCCCCCCcchhhhhh---hhhc-CCcEEEEEEecccccCcHH-------HHHHHHHHHHHHH
Confidence            877777788999999999998754443312111   1111 554 567789999987443       2223446678888


Q ss_pred             HHhCCC----ceEEeccCCC-C-------CHHHHHHHHHHHHcCC
Q 036449          148 KLIGAP----AYIECSSKTQ-Q-------NVKAVFDAAIRVVLQP  180 (197)
Q Consensus       148 ~~~~~~----~~~~~sa~~~-~-------~i~~l~~~i~~~~~~~  180 (197)
                      ..|++.    |++.-||..- +       .|.+|++.+...+..+
T Consensus       159 s~y~f~gd~~Pii~gSal~ale~~~~~~~~i~eLm~avd~yip~P  203 (394)
T COG0050         159 SEYGFPGDDTPIIRGSALKALEGDAKWEAKIEELMDAVDSYIPTP  203 (394)
T ss_pred             HHcCCCCCCcceeechhhhhhcCCcchHHHHHHHHHHHHhcCCCC
Confidence            999874    4566665532 1       2456666655555443

>TIGR00750 lao LAO/AO transport system ATPase

Probab=99.16  E-value=3.5e-10  Score=85.05  Aligned_cols=108  Identities=17%  Similarity=0.112  Sum_probs=62.5

Q ss_pred             EEEEEEEeCCCccccccccccCcCCCcEEEEEEeCCCchhHHHHHHHHHHHHhhhCCCCCEEEEeeCCcccCCcccccCC
Q 036449           53 TVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLRDDKQFFIDH  132 (197)
Q Consensus        53 ~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~~~ivv~nK~D~~~~~~~~~~~  132 (197)
                      .+.+.|+||+|.-...   ......+|.++++.+..   +.+++ ..+...+.    +.|.++|+||+|+......    
T Consensus       126 g~D~viidT~G~~~~e---~~i~~~aD~i~vv~~~~---~~~el-~~~~~~l~----~~~~ivv~NK~Dl~~~~~~----  190 (300)
T TIGR00750       126 GYDVIIVETVGVGQSE---VDIANMADTFVVVTIPG---TGDDL-QGIKAGLM----EIADIYVVNKADGEGATNV----  190 (300)
T ss_pred             CCCEEEEeCCCCchhh---hHHHHhhceEEEEecCC---ccHHH-HHHHHHHh----hhccEEEEEcccccchhHH----
Confidence            4667899999853111   12455678888775433   33333 22223232    4678999999999653210    


Q ss_pred             CCCCcccHH---HHHHHHHH-hCC-CceEEeccCCCCCHHHHHHHHHHHHc
Q 036449          133 PGAVPISTA---QGEELRKL-IGA-PAYIECSSKTQQNVKAVFDAAIRVVL  178 (197)
Q Consensus       133 ~~~~~~~~~---~~~~~~~~-~~~-~~~~~~sa~~~~~i~~l~~~i~~~~~  178 (197)
                         ......   ....+... .+. .+++++||+++.|+++++++|.+...
T Consensus       191 ---~~~~~~~~~~l~~l~~~~~~~~~~v~~iSA~~g~Gi~~L~~~i~~~~~  238 (300)
T TIGR00750       191 ---TIARLMLALALEEIRRREDGWRPPVLTTSAVEGRGIDELWDAIEEHKT  238 (300)
T ss_pred             ---HHHHHHHHHHHhhccccccCCCCCEEEEEccCCCCHHHHHHHHHHHHH
Confidence               000000   00111111 111 26899999999999999999998644

Mutations have also been found that do not phosphorylate the periplasmic binding proteins, yet still allow transport. The ATPase activity of this protein seems to be necessary, however.

>PF00503 G-alpha: G-protein alpha subunit; InterPro: IPR001019 Guanine nucleotide binding proteins (G proteins) are membrane-associated, heterotrimeric proteins composed of three subunits: alpha (IPR001019 from INTERPRO), beta (IPR001632 from INTERPRO) and gamma (IPR001770 from INTERPRO) []

Probab=99.14  E-value=1e-09  Score=85.48  Aligned_cols=124  Identities=19%  Similarity=0.188  Sum_probs=79.5

Q ss_pred             EEEEEEeCCCccccccccccCcCCCcEEEEEEeCCCchh----------HHHHHHHHHHHHhhhC-CCCCEEEEeeCCcc
Q 036449           54 VNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKAS----------YENVSKKWIPELKHYA-PGVPIILVGTKLDL  122 (197)
Q Consensus        54 ~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s----------~~~~~~~~~~~i~~~~-~~~~~ivv~nK~D~  122 (197)
                      ..+.++|++|+...+.-|..++.+++++|||+++++...          +.+....|-..+.... .+.|++|++||.|+
T Consensus       236 ~~~~~~DvGGqr~eRkKW~~~F~~v~~vif~vsls~ydq~~~ed~~~nrl~esl~lF~~i~~~~~~~~~~iil~lnK~D~  315 (389)
T PF00503_consen  236 RKFRLIDVGGQRSERKKWIHCFEDVTAVIFVVSLSEYDQTLYEDPNTNRLHESLNLFESICNNPWFKNTPIILFLNKIDL  315 (389)
T ss_dssp             EEEEEEEETSSGGGGGGGGGGGTTESEEEEEEEGGGGGSBESSSTTSBHHHHHHHHHHHHHTSGGGTTSEEEEEEE-HHH
T ss_pred             cccceecCCCCchhhhhHHHHhccccEEEEeecccchhhhhcccchHHHHHHHHHHHHHHHhCcccccCceEEeeecHHH
Confidence            567899999999999999999999999999999875322          3333344444444443 68999999999998


Q ss_pred             cCCccc----c----cCCCCCCcccHHHHHHHHHHh-----C-----C-CceEEeccCCCCCHHHHHHHHHHHH
Q 036449          123 RDDKQF----F----IDHPGAVPISTAQGEELRKLI-----G-----A-PAYIECSSKTQQNVKAVFDAAIRVV  177 (197)
Q Consensus       123 ~~~~~~----~----~~~~~~~~~~~~~~~~~~~~~-----~-----~-~~~~~~sa~~~~~i~~l~~~i~~~~  177 (197)
                      ..+.-.    .    .+..+....+.+.+..+....     .     . ..+..++|.+..++..+|+.+.+.+
T Consensus       316 f~~Kl~~~~~l~~~fp~y~g~~~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~h~t~a~d~~~~~~v~~~v~~~i  389 (389)
T PF00503_consen  316 FEEKLKKGPKLSKYFPDYTGDRPNDVDSAIKFIKNKFLRLNRNNSPSRRIYVHFTCATDTENIRKVFNAVKDII  389 (389)
T ss_dssp             HHHHTTTSSCGGGTSTTGGSH-TSSHHHHHHHHHHHHHCTHSTTTTCS-EEEEEESTTSHHHHHHHHHHHHHHH
T ss_pred             HHHHccCCCchHhhCCCCCCCcccCHHHHHHHHHHHHHHhccCCCCCcceEEEEeeecccHHHHHHHHHhcCcC
Confidence            643211    0    111111112334443333221     1     1 1245688998899999999887653

G proteins and their receptors (GPCRs) form one of the most prevalent signalling systems in mammalian cells, regulating systems as diverse as sensory perception, cell growth and hormonal regulation []. At the cell surface, the binding of ligands such as hormones and neurotransmitters to a GPCR activates the receptor by causing a conformational change, which in turn activates the bound G protein on the intracellular-side of the membrane. The activated receptor promotes the exchange of bound GDP for GTP on the G protein alpha subunit. GTP binding changes the conformation of switch regions within the alpha subunit, which allows the bound trimeric G protein (inactive) to be released from the receptor, and to dissociate into active alpha subunit (GTP-bound) and beta/gamma dimer. The alpha subunit and the beta/gamma dimer go on to activate distinct downstream effectors, such as adenylyl cyclase, phosphodiesterases, phospholipase C, and ion channels. These effectors in turn regulate the intracellular concentrations of secondary messengers, such as cAMP, diacylglycerol, sodium or calcium cations, which ultimately lead to a physiological response, usually via the downstream regulation of gene transcription. The cycle is completed by the hydrolysis of alpha subunit-bound GTP to GDP, resulting in the re-association of the alpha and beta/gamma subunits and their binding to the receptor, which terminates the signal []. The length of the G protein signal is controlled by the duration of the GTP-bound alpha subunit, which can be regulated by RGS (regulator of G protein signalling) proteins (IPR000342 from INTERPRO) or by covalent modifications []. There are several isoforms of each subunit, many of which have splice variants, which together can make up hundreds of combinations of G proteins. The specific combination of subunits in heterotrimeric G proteins affects not only which receptor it can bind to, but also which downstream target is affected, providing the means to target specific physiological processes in response to specific external stimuli [, ]. G proteins carry lipid modifications on one or more of their subunits to target them to the plasma membrane and to contribute to protein interactions. This family consists of the G protein alpha subunit, which acts as a weak GTPase. G protein classes are defined based on the sequence and function of their alpha subunits, which in mammals fall into four main categories: G(S)alpha, G(Q)alpha, G(I)alpha and G(12)alpha; there are also fungal and plant classes of alpha subunits. The alpha subunit consists of two domains: a GTP-binding domain and a helical insertion domain (IPR011025 from INTERPRO). The GTP-binding domain is homologous to Ras-like small GTPases, and includes switch regions I and II, which change conformation during activation. The switch regions are loops of alpha-helices with conformations sensitive to guanine nucleotides. The helical insertion domain is inserted into the GTP-binding domain before switch region I and is unique to heterotrimeric G proteins. This helical insertion domain functions to sequester the guanine nucleotide at the interface with the GTP-binding domain and must be displaced to enable nucleotide dissociation.; GO: 0004871 signal transducer activity, 0019001 guanyl nucleotide binding, 0007186 G-protein coupled receptor protein signaling pathway; PDB: 3QI2_B 3QE0_A 2IK8_A 2OM2_A 2GTP_B 2XNS_B 3ONW_B 1KJY_A 2EBC_A 1Y3A_B ....

>smart00053 DYNc Dynamin, GTPase

Probab=99.13  E-value=8.4e-10  Score=79.75  Aligned_cols=69  Identities=23%  Similarity=0.177  Sum_probs=45.3

Q ss_pred             EEEEEEeCCCcccc-------------ccccccCcCC-CcEEEEEEeCCCchhHHHHHHHHHHHHhhhCCCCCEEEEeeC
Q 036449           54 VNLGLWDTAGQEDY-------------NRLRPLSYRG-ADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTK  119 (197)
Q Consensus        54 ~~~~i~D~~G~~~~-------------~~~~~~~~~~-~~~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~~~ivv~nK  119 (197)
                      ..+.++|+||-...             ..+...++++ .+++++|+|.+..-+..+. ..+...+...  +.++++|+||
T Consensus       125 ~~ltLIDlPGl~~~~~~~~~~~~~~~i~~lv~~yi~~~~~IIL~Vvda~~d~~~~d~-l~ia~~ld~~--~~rti~ViTK  201 (240)
T smart00053      125 LNLTLIDLPGITKVAVGDQPPDIEEQIKDMIKQFISKEECLILAVTPANVDLANSDA-LKLAKEVDPQ--GERTIGVITK  201 (240)
T ss_pred             CceEEEeCCCccccccCCccHHHHHHHHHHHHHHHhCccCeEEEEEECCCCCCchhH-HHHHHHHHHc--CCcEEEEEEC
Confidence            45889999996421             1233446664 4589999998654433332 2444444444  7899999999


Q ss_pred             CcccCC
Q 036449          120 LDLRDD  125 (197)
Q Consensus       120 ~D~~~~  125 (197)
                      .|..+.
T Consensus       202 ~D~~~~  207 (240)
T smart00053      202 LDLMDE  207 (240)
T ss_pred             CCCCCc
Confidence            999764

Large GTPases that mediate vesicle trafficking. Dynamin participates in the endocytic uptake of receptors, associated ligands, and plasma membrane following an exocytic event.

>COG4108 PrfC Peptide chain release factor RF-3 [Translation, ribosomal structure and biogenesis]

Probab=99.11  E-value=1e-09  Score=83.75  Aligned_cols=116  Identities=16%  Similarity=0.115  Sum_probs=79.6

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhh--CCCCC--------CCCCce----------ee-eeeEEEEECCeEEEEEEEeCCCcc
Q 036449            7 IKCVTVGDGAVGKTCLLISYTS--NTFPT--------DYVPTV----------FD-NFSANVVVNGSTVNLGLWDTAGQE   65 (197)
Q Consensus         7 ~~i~v~G~~~~GKstli~~~~~--~~~~~--------~~~~~~----------~~-~~~~~~~~~~~~~~~~i~D~~G~~   65 (197)
                      =..++|-+|.+|||||..+++-  +....        ....+.          +. ..+..+.++.....+++.|||||+
T Consensus        13 RTFAIISHPDAGKTTlTEkLLlfGgaIq~AG~Vk~rk~~~~a~SDWM~iEkqRGISVtsSVMqF~Y~~~~iNLLDTPGHe   92 (528)
T COG4108          13 RTFAIISHPDAGKTTLTEKLLLFGGAIQEAGTVKGRKSGKHAKSDWMEIEKQRGISVTSSVMQFDYADCLVNLLDTPGHE   92 (528)
T ss_pred             cceeEEecCCCCcccHHHHHHHhcchhhhcceeeeccCCcccccHHHHHHHhcCceEEeeEEEeccCCeEEeccCCCCcc
Confidence            3568999999999999988762  22111        011111          10 111223345556788899999999


Q ss_pred             ccccccccCcCCCcEEEEEEeCCCchhHHHHHHHHHHHHhhhCCCCCEEEEeeCCcccCCc
Q 036449           66 DYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLRDDK  126 (197)
Q Consensus        66 ~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~~~ivv~nK~D~~~~~  126 (197)
                      +|..-.-..+..+|.+++|+|+..+-.-+..  ++..-.+.+  ++|++-+.||.|.....
T Consensus        93 DFSEDTYRtLtAvDsAvMVIDaAKGiE~qT~--KLfeVcrlR--~iPI~TFiNKlDR~~rd  149 (528)
T COG4108          93 DFSEDTYRTLTAVDSAVMVIDAAKGIEPQTL--KLFEVCRLR--DIPIFTFINKLDREGRD  149 (528)
T ss_pred             ccchhHHHHHHhhheeeEEEecccCccHHHH--HHHHHHhhc--CCceEEEeeccccccCC
Confidence            9887666678889999999999887544443  555555544  99999999999986643

>COG0480 FusA Translation elongation factors (GTPases) [Translation, ribosomal structure and biogenesis]

Probab=99.10  E-value=1.7e-09  Score=88.81  Aligned_cols=118  Identities=22%  Similarity=0.208  Sum_probs=82.7

Q ss_pred             CCceeEEEEEcCCCCCHHHHHHHHhhCC--CCC--C-CCC---c--e------eeee---eEEEEECCeEEEEEEEeCCC
Q 036449            3 ASRFIKCVTVGDGAVGKTCLLISYTSNT--FPT--D-YVP---T--V------FDNF---SANVVVNGSTVNLGLWDTAG   63 (197)
Q Consensus         3 ~~~~~~i~v~G~~~~GKstli~~~~~~~--~~~--~-~~~---~--~------~~~~---~~~~~~~~~~~~~~i~D~~G   63 (197)
                      ..+.-+|.++|+.++|||||..+++...  ...  + ...   +  .      +-+.   .....+.+ .+.++++||||
T Consensus         7 ~~~~RNigI~aHidaGKTTltE~lL~~tG~i~k~G~v~~g~~~~D~~e~EqeRGITI~saa~s~~~~~-~~~iNlIDTPG   85 (697)
T COG0480           7 LERIRNIGIVAHIDAGKTTLTERILFYTGIISKIGEVHDGAATMDWMEQEQERGITITSAATTLFWKG-DYRINLIDTPG   85 (697)
T ss_pred             cccceEEEEEeccCCChHHHHHHHHHHcCCcCCCccccCCCccCCCcHHHHhcCCEEeeeeeEEEEcC-ceEEEEeCCCC
Confidence            4567789999999999999998887422  111  0 000   0  0      0011   11233443 47888999999


Q ss_pred             ccccccccccCcCCCcEEEEEEeCCCchhHHHHHHHHHHHHhhhCCCCCEEEEeeCCcccCC
Q 036449           64 QEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLRDD  125 (197)
Q Consensus        64 ~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~~~ivv~nK~D~~~~  125 (197)
                      |-+|.......++-+|++++|+|+...-..+.- .-|.+... .  ++|.+++.||+|....
T Consensus        86 HVDFt~EV~rslrvlDgavvVvdaveGV~~QTE-tv~rqa~~-~--~vp~i~fiNKmDR~~a  143 (697)
T COG0480          86 HVDFTIEVERSLRVLDGAVVVVDAVEGVEPQTE-TVWRQADK-Y--GVPRILFVNKMDRLGA  143 (697)
T ss_pred             ccccHHHHHHHHHhhcceEEEEECCCCeeecHH-HHHHHHhh-c--CCCeEEEEECcccccc
Confidence            999999888889999999999999887655544 34444433 3  5999999999998654

>TIGR00993 3a0901s04IAP86 chloroplast protein import component Toc86/159, G and M domains

Probab=99.10  E-value=7.3e-10  Score=89.14  Aligned_cols=117  Identities=16%  Similarity=0.132  Sum_probs=71.7

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHhhCCC-CCC-CCCceeeeeeEEEEECCeEEEEEEEeCCCcccccc----------cccc
Q 036449            6 FIKCVTVGDGAVGKTCLLISYTSNTF-PTD-YVPTVFDNFSANVVVNGSTVNLGLWDTAGQEDYNR----------LRPL   73 (197)
Q Consensus         6 ~~~i~v~G~~~~GKstli~~~~~~~~-~~~-~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~----------~~~~   73 (197)
                      .++|+++|.+|+||||++|++++... ... ..+.+..........++  ..+.++||||......          ....
T Consensus       118 slrIvLVGKTGVGKSSLINSILGekvf~vss~~~~TTr~~ei~~~idG--~~L~VIDTPGL~dt~~dq~~neeILk~Ik~  195 (763)
T TIGR00993       118 SLNILVLGKSGVGKSATINSIFGEVKFSTDAFGMGTTSVQEIEGLVQG--VKIRVIDTPGLKSSASDQSKNEKILSSVKK  195 (763)
T ss_pred             ceEEEEECCCCCCHHHHHHHHhccccccccCCCCCceEEEEEEEEECC--ceEEEEECCCCCccccchHHHHHHHHHHHH
Confidence            47999999999999999999998653 222 11222222222233445  5677999999654210          0111


Q ss_pred             CcC--CCcEEEEEEeCCCchhHHHHHHHHHHHHhhhC-C--CCCEEEEeeCCcccCC
Q 036449           74 SYR--GADVFILAFSLISKASYENVSKKWIPELKHYA-P--GVPIILVGTKLDLRDD  125 (197)
Q Consensus        74 ~~~--~~~~~i~v~d~~~~~s~~~~~~~~~~~i~~~~-~--~~~~ivv~nK~D~~~~  125 (197)
                      ++.  .+|++|+|..++.......- ..++..+...+ +  =..+|||.|+.|..+.
T Consensus       196 ~Lsk~gpDVVLlV~RLd~~~~D~eD-~~aLr~Iq~lFG~~Iwk~tIVVFThgD~lpp  251 (763)
T TIGR00993       196 FIKKNPPDIVLYVDRLDMQTRDSND-LPLLRTITDVLGPSIWFNAIVTLTHAASAPP  251 (763)
T ss_pred             HHhcCCCCEEEEEEeCCCccccHHH-HHHHHHHHHHhCHHhHcCEEEEEeCCccCCC
Confidence            222  47999999887643332111 24555565555 2  2467899999998764

The long precursor of the 86K protein originally described is proposed to have three domains. The N-terminal A-domain is acidic, repetitive, weakly conserved, readily removed by proteolysis during chloroplast isolation, and not required for protein translocation. The other domains are designated G (GTPase) and M (membrane anchor); this family includes most of the G domain and all of M.

>cd01855 YqeH YqeH

Probab=99.09  E-value=6e-10  Score=78.43  Aligned_cols=95  Identities=19%  Similarity=0.228  Sum_probs=65.7

Q ss_pred             cccccccCcCCCcEEEEEEeCCCchhHHHHHHHHHHHHhhhCCCCCEEEEeeCCcccCCcccccCCCCCCcccHHHHHHH
Q 036449           67 YNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPISTAQGEEL  146 (197)
Q Consensus        67 ~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~  146 (197)
                      +..++..++..+|++++|+|++++...      |...+.....+.|+++|+||+|+.+..           ...+....+
T Consensus        24 ~~~~l~~~~~~ad~il~VvD~~~~~~~------~~~~l~~~~~~~~~ilV~NK~Dl~~~~-----------~~~~~~~~~   86 (190)
T cd01855          24 ILNLLSSISPKKALVVHVVDIFDFPGS------LIPRLRLFGGNNPVILVGNKIDLLPKD-----------KNLVRIKNW   86 (190)
T ss_pred             HHHHHHhcccCCcEEEEEEECccCCCc------cchhHHHhcCCCcEEEEEEchhcCCCC-----------CCHHHHHHH
Confidence            567778889999999999999876421      212222223478999999999996432           122222233


Q ss_pred             H-----HHhCC--CceEEeccCCCCCHHHHHHHHHHHHc
Q 036449          147 R-----KLIGA--PAYIECSSKTQQNVKAVFDAAIRVVL  178 (197)
Q Consensus       147 ~-----~~~~~--~~~~~~sa~~~~~i~~l~~~i~~~~~  178 (197)
                      .     ...+.  ..++.+||+++.|++++++.|.+.+.
T Consensus        87 ~~~~~~~~~~~~~~~i~~vSA~~~~gi~eL~~~l~~~l~  125 (190)
T cd01855          87 LRAKAAAGLGLKPKDVILISAKKGWGVEELINAIKKLAK  125 (190)
T ss_pred             HHHHHHhhcCCCcccEEEEECCCCCCHHHHHHHHHHHhh
Confidence            2     22222  25899999999999999999998764

YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases.

>KOG0468 consensus U5 snRNP-specific protein [Translation, ribosomal structure and biogenesis]

Probab=99.08  E-value=4e-10  Score=89.79  Aligned_cols=116  Identities=23%  Similarity=0.302  Sum_probs=82.6

Q ss_pred             CceeEEEEEcCCCCCHHHHHHHHhhCCCCCC---------CCCceeeee----eE-----EEE---ECCeEEEEEEEeCC
Q 036449            4 SRFIKCVTVGDGAVGKTCLLISYTSNTFPTD---------YVPTVFDNF----SA-----NVV---VNGSTVNLGLWDTA   62 (197)
Q Consensus         4 ~~~~~i~v~G~~~~GKstli~~~~~~~~~~~---------~~~~~~~~~----~~-----~~~---~~~~~~~~~i~D~~   62 (197)
                      ....+|.++|+-+.|||+|+.-+.....+..         |..+.....    +.     +..   ..++.+.+++.|||
T Consensus       126 ~~irnV~l~GhLhhGKT~l~D~Lv~~tHp~~~~~~e~~lrytD~l~~E~eRg~sIK~~p~Tl~l~D~~~KS~l~nilDTP  205 (971)
T KOG0468|consen  126 ERIRNVGLVGHLHHGKTALMDLLVEQTHPDFSKNTEADLRYTDTLFYEQERGCSIKSTPVTLVLSDSKGKSYLMNILDTP  205 (971)
T ss_pred             ceEEEEEEeeccccChhHHHHhhceeccccccccccccccccccchhhHhcCceEeecceEEEEecCcCceeeeeeecCC
Confidence            4678899999999999999988876544322         111110000    00     111   14677889999999


Q ss_pred             CccccccccccCcCCCcEEEEEEeCCCchhHHHHHHHHHHHHhhhCCCCCEEEEeeCCccc
Q 036449           63 GQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLR  123 (197)
Q Consensus        63 G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~~~ivv~nK~D~~  123 (197)
                      ||-.|.......+..+|++++|+|+..+-.+..- +-+...++.   +.|+++|.||.|..
T Consensus       206 GHVnF~DE~ta~l~~sDgvVlvvDv~EGVmlntE-r~ikhaiq~---~~~i~vviNKiDRL  262 (971)
T KOG0468|consen  206 GHVNFSDETTASLRLSDGVVLVVDVAEGVMLNTE-RIIKHAIQN---RLPIVVVINKVDRL  262 (971)
T ss_pred             CcccchHHHHHHhhhcceEEEEEEcccCceeeHH-HHHHHHHhc---cCcEEEEEehhHHH
Confidence            9999888777888899999999999988777654 333333333   58999999999974

>cd01859 MJ1464 MJ1464

Probab=99.06  E-value=5.9e-10  Score=75.97  Aligned_cols=93  Identities=15%  Similarity=0.114  Sum_probs=63.2

Q ss_pred             cccccCcCCCcEEEEEEeCCCchhHHHHHHHHHHHHhhhCCCCCEEEEeeCCcccCCcccccCCCCCCcccHHHHHHHHH
Q 036449           69 RLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPISTAQGEELRK  148 (197)
Q Consensus        69 ~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~  148 (197)
                      .+..+.+.++|++++|+|++++....+.  .+...+..  .+.|+++|+||+|+.+...            ......+..
T Consensus         4 ~~~~~i~~~aD~vl~V~D~~~~~~~~~~--~l~~~~~~--~~~p~iiv~NK~Dl~~~~~------------~~~~~~~~~   67 (156)
T cd01859           4 RLVRRIIKESDVVLEVLDARDPELTRSR--KLERYVLE--LGKKLLIVLNKADLVPKEV------------LEKWKSIKE   67 (156)
T ss_pred             HHHHHHHhhCCEEEEEeeCCCCcccCCH--HHHHHHHh--CCCcEEEEEEhHHhCCHHH------------HHHHHHHHH
Confidence            4455667789999999999876543321  22233322  2689999999999854211            111112333


Q ss_pred             HhCCCceEEeccCCCCCHHHHHHHHHHHHc
Q 036449          149 LIGAPAYIECSSKTQQNVKAVFDAAIRVVL  178 (197)
Q Consensus       149 ~~~~~~~~~~sa~~~~~i~~l~~~i~~~~~  178 (197)
                      ..+. +++.+||+++.|++++++.+.+.+.
T Consensus        68 ~~~~-~~~~iSa~~~~gi~~L~~~l~~~~~   96 (156)
T cd01859          68 SEGI-PVVYVSAKERLGTKILRRTIKELAK   96 (156)
T ss_pred             hCCC-cEEEEEccccccHHHHHHHHHHHHh
Confidence            3444 7899999999999999999988764

This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus.

>PRK10463 hydrogenase nickel incorporation protein HypB; Provisional

Probab=99.05  E-value=1.6e-09  Score=79.84  Aligned_cols=56  Identities=11%  Similarity=0.039  Sum_probs=39.4

Q ss_pred             CCEEEEeeCCcccCCcccccCCCCCCcccHHHHHH-HHHHhCCCceEEeccCCCCCHHHHHHHHHHH
Q 036449          111 VPIILVGTKLDLRDDKQFFIDHPGAVPISTAQGEE-LRKLIGAPAYIECSSKTQQNVKAVFDAAIRV  176 (197)
Q Consensus       111 ~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~sa~~~~~i~~l~~~i~~~  176 (197)
                      .+-++|+||+|+.+...          .+.+...+ +.......+++++||++|.|++++.+||.++
T Consensus       231 ~ADIVVLNKiDLl~~~~----------~dle~~~~~lr~lnp~a~I~~vSA~tGeGld~L~~~L~~~  287 (290)
T PRK10463        231 AASLMLLNKVDLLPYLN----------FDVEKCIACAREVNPEIEIILISATSGEGMDQWLNWLETQ  287 (290)
T ss_pred             cCcEEEEEhHHcCcccH----------HHHHHHHHHHHhhCCCCcEEEEECCCCCCHHHHHHHHHHh
Confidence            56799999999965321          12233333 3333334489999999999999999999774

>PRK00098 GTPase RsgA; Reviewed

Probab=99.05  E-value=1.6e-09  Score=81.36  Aligned_cols=87  Identities=20%  Similarity=0.220  Sum_probs=65.6

Q ss_pred             CcCCCcEEEEEEeCCCchhHHHHHHHHHHHHhhhCCCCCEEEEeeCCcccCCcccccCCCCCCcccHHHHHHHHHHhCCC
Q 036449           74 SYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPISTAQGEELRKLIGAP  153 (197)
Q Consensus        74 ~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  153 (197)
                      .+.++|.+++|+|++++.........|+..+...  ++|+++|+||+|+.+...           .........+..+. 
T Consensus        77 iaaniD~vllV~d~~~p~~~~~~idr~L~~~~~~--~ip~iIVlNK~DL~~~~~-----------~~~~~~~~~~~~g~-  142 (298)
T PRK00098         77 IAANVDQAVLVFAAKEPDFSTDLLDRFLVLAEAN--GIKPIIVLNKIDLLDDLE-----------EARELLALYRAIGY-  142 (298)
T ss_pred             eeecCCEEEEEEECCCCCCCHHHHHHHHHHHHHC--CCCEEEEEEhHHcCCCHH-----------HHHHHHHHHHHCCC-
Confidence            4689999999999998876655446777766554  799999999999953211           12233344455676 


Q ss_pred             ceEEeccCCCCCHHHHHHHHH
Q 036449          154 AYIECSSKTQQNVKAVFDAAI  174 (197)
Q Consensus       154 ~~~~~sa~~~~~i~~l~~~i~  174 (197)
                      +++++||+++.|++++++.+.
T Consensus       143 ~v~~vSA~~g~gi~~L~~~l~  163 (298)
T PRK00098        143 DVLELSAKEGEGLDELKPLLA  163 (298)
T ss_pred             eEEEEeCCCCccHHHHHhhcc
Confidence            899999999999999998874

>cd01854 YjeQ_engC YjeQ/EngC

Probab=99.00  E-value=2.8e-09  Score=79.64  Aligned_cols=88  Identities=17%  Similarity=0.188  Sum_probs=67.2

Q ss_pred             ccCcCCCcEEEEEEeCCCch-hHHHHHHHHHHHHhhhCCCCCEEEEeeCCcccCCcccccCCCCCCcccHHHHHHHHHHh
Q 036449           72 PLSYRGADVFILAFSLISKA-SYENVSKKWIPELKHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPISTAQGEELRKLI  150 (197)
Q Consensus        72 ~~~~~~~~~~i~v~d~~~~~-s~~~~~~~~~~~i~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  150 (197)
                      ...+.++|.+++|+|+.++. ++..+ ..|+..+...  ++|+++|+||+|+.+...            ......+....
T Consensus        73 ~~i~anvD~vllV~d~~~p~~s~~~l-dr~L~~~~~~--~ip~iIVlNK~DL~~~~~------------~~~~~~~~~~~  137 (287)
T cd01854          73 QVIAANVDQLVIVVSLNEPFFNPRLL-DRYLVAAEAA--GIEPVIVLTKADLLDDEE------------EELELVEALAL  137 (287)
T ss_pred             eeEEEeCCEEEEEEEcCCCCCCHHHH-HHHHHHHHHc--CCCEEEEEEHHHCCChHH------------HHHHHHHHHhC
Confidence            34588999999999999987 77777 6787777655  799999999999965321            11223334445


Q ss_pred             CCCceEEeccCCCCCHHHHHHHHHH
Q 036449          151 GAPAYIECSSKTQQNVKAVFDAAIR  175 (197)
Q Consensus       151 ~~~~~~~~sa~~~~~i~~l~~~i~~  175 (197)
                      +. +++.+||+++.|+++++..|..
T Consensus       138 g~-~v~~vSA~~g~gi~~L~~~L~~  161 (287)
T cd01854         138 GY-PVLAVSAKTGEGLDELREYLKG  161 (287)
T ss_pred             CC-eEEEEECCCCccHHHHHhhhcc
Confidence            66 8999999999999999988764

YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation.

>COG5019 CDC3 Septin family protein [Cell division and chromosome partitioning / Cytoskeleton]

Probab=98.99  E-value=1.2e-08  Score=76.54  Aligned_cols=116  Identities=20%  Similarity=0.189  Sum_probs=70.8

Q ss_pred             ceeEEEEEcCCCCCHHHHHHHHhhCCCCCCC----------CCcee-eeeeEEEEECCeEEEEEEEeCCCcc--------
Q 036449            5 RFIKCVTVGDGAVGKTCLLISYTSNTFPTDY----------VPTVF-DNFSANVVVNGSTVNLGLWDTAGQE--------   65 (197)
Q Consensus         5 ~~~~i~v~G~~~~GKstli~~~~~~~~~~~~----------~~~~~-~~~~~~~~~~~~~~~~~i~D~~G~~--------   65 (197)
                      ..++|+++|++|+||||+++.+++.......          .++.. ......+.-++..+.++++||||--        
T Consensus        22 i~f~im~~G~sG~GKttfiNtL~~~~l~~~~~~~~~~~~~~~~~~~i~~~~~~l~e~~~~~~l~vIDtpGfGD~idNs~~  101 (373)
T COG5019          22 IDFTIMVVGESGLGKTTFINTLFGTSLVDETEIDDIRAEGTSPTLEIKITKAELEEDGFHLNLTVIDTPGFGDFIDNSKC  101 (373)
T ss_pred             CceEEEEecCCCCchhHHHHhhhHhhccCCCCccCcccccCCcceEEEeeeeeeecCCeEEEEEEeccCCcccccccccc
Confidence            3589999999999999999999987443321          12221 1222333346778899999999911        


Q ss_pred             -------------ccc-----cccc-cCc-CCCcEEEEEEeCCC-chhHHHHHHHHHHHHhhhCCCCCEEEEeeCCcccC
Q 036449           66 -------------DYN-----RLRP-LSY-RGADVFILAFSLIS-KASYENVSKKWIPELKHYAPGVPIILVGTKLDLRD  124 (197)
Q Consensus        66 -------------~~~-----~~~~-~~~-~~~~~~i~v~d~~~-~~s~~~~~~~~~~~i~~~~~~~~~ivv~nK~D~~~  124 (197)
                                   .|.     ..+. .+. ..+|+++|.+-.+. .-+..++  ..+..+...   +.+|=|..|+|...
T Consensus       102 we~I~~yI~~q~d~yl~~E~~~~R~~~~~D~RVH~cLYFI~Ptgh~l~~~DI--e~Mk~ls~~---vNlIPVI~KaD~lT  176 (373)
T COG5019         102 WEPIVDYIDDQFDQYLDEEQKIKRNPKFKDTRVHACLYFIRPTGHGLKPLDI--EAMKRLSKR---VNLIPVIAKADTLT  176 (373)
T ss_pred             HHHHHHHHHHHHHHHHHHhhccccccccccCceEEEEEEecCCCCCCCHHHH--HHHHHHhcc---cCeeeeeeccccCC
Confidence                         111     1111 111 13789999888653 2333333  445555554   67777788999864


Q ss_pred             C
Q 036449          125 D  125 (197)
Q Consensus       125 ~  125 (197)
                      .
T Consensus       177 ~  177 (373)
T COG5019         177 D  177 (373)
T ss_pred             H
Confidence            3

>KOG1143 consensus Predicted translation elongation factor [Translation, ribosomal structure and biogenesis]

Probab=98.97  E-value=8.6e-09  Score=77.42  Aligned_cols=167  Identities=15%  Similarity=0.181  Sum_probs=100.3

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHhhCCCCCCC------------------CCce-----e-eeeeEEEEE----------CC
Q 036449            6 FIKCVTVGDGAVGKTCLLISYTSNTFPTDY------------------VPTV-----F-DNFSANVVV----------NG   51 (197)
Q Consensus         6 ~~~i~v~G~~~~GKstli~~~~~~~~~~~~------------------~~~~-----~-~~~~~~~~~----------~~   51 (197)
                      .+|++++|...+|||||+-.+..+.+....                  .+.+     + +.....+.+          +.
T Consensus       167 evRvAVlGg~D~GKSTLlGVLTQgeLDnG~GrARln~FRh~HEiqsGrTSsis~evlGFd~~g~vVNY~~~~taEEi~e~  246 (591)
T KOG1143|consen  167 EVRVAVLGGCDVGKSTLLGVLTQGELDNGNGRARLNIFRHPHEIQSGRTSSISNEVLGFDNRGKVVNYAQNMTAEEIVEK  246 (591)
T ss_pred             EEEEEEecCcccCcceeeeeeecccccCCCCeeeeehhcchhhhccCcccccchhcccccccccccchhhcccHHHHHhh
Confidence            489999999999999999777655443210                  0000     0 000000001          12


Q ss_pred             eEEEEEEEeCCCccccccccccCcC--CCcEEEEEEeCCCchhHHHHHHHHHHHHhhhCCCCCEEEEeeCCcccCCcccc
Q 036449           52 STVNLGLWDTAGQEDYNRLRPLSYR--GADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLRDDKQFF  129 (197)
Q Consensus        52 ~~~~~~i~D~~G~~~~~~~~~~~~~--~~~~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~~~ivv~nK~D~~~~~~~~  129 (197)
                      ..-.++++|.+|+.+|.......+.  ..|..++|+.+...-...  .++-+..+...  ++|+.++.+|+|+.......
T Consensus       247 SSKlvTfiDLAGh~kY~~TTi~gLtgY~Ph~A~LvVsA~~Gi~~t--TrEHLgl~~AL--~iPfFvlvtK~Dl~~~~~~~  322 (591)
T KOG1143|consen  247 SSKLVTFIDLAGHAKYQKTTIHGLTGYTPHFACLVVSADRGITWT--TREHLGLIAAL--NIPFFVLVTKMDLVDRQGLK  322 (591)
T ss_pred             hcceEEEeecccchhhheeeeeecccCCCceEEEEEEcCCCCccc--cHHHHHHHHHh--CCCeEEEEEeeccccchhHH
Confidence            2345789999999998876655544  367889999987664432  23445556666  89999999999998762211


Q ss_pred             ---------cCC-----CCCCcccHHHHHHHHHH---hCCCceEEeccCCCCCHHHHHHHHHHHH
Q 036449          130 ---------IDH-----PGAVPISTAQGEELRKL---IGAPAYIECSSKTQQNVKAVFDAAIRVV  177 (197)
Q Consensus       130 ---------~~~-----~~~~~~~~~~~~~~~~~---~~~~~~~~~sa~~~~~i~~l~~~i~~~~  177 (197)
                               ...     -..+.-+.+++-..+++   -+..|+|.+|+.+|+|++-+ ..+..-+
T Consensus       323 ~tv~~l~nll~~~Gc~kvp~~Vt~~ddAv~Aaq~~~s~nivPif~vSsVsGegl~ll-~~fLn~L  386 (591)
T KOG1143|consen  323 KTVKDLSNLLAKAGCTKVPKRVTTKDDAVKAAQELCSGNIVPIFAVSSVSGEGLRLL-RTFLNCL  386 (591)
T ss_pred             HHHHHHHHHHhhcCccccceEeechHHHHHHHHHhccCCceeEEEEeecCccchhHH-HHHHhhc
Confidence                     001     11111233444333333   24458899999999998743 3444433

>PRK12289 GTPase RsgA; Reviewed

Probab=98.97  E-value=7.4e-09  Score=79.06  Aligned_cols=91  Identities=19%  Similarity=0.216  Sum_probs=65.1

Q ss_pred             ccccCcCCCcEEEEEEeCCCch-hHHHHHHHHHHHHhhhCCCCCEEEEeeCCcccCCcccccCCCCCCcccHHHHHHHHH
Q 036449           70 LRPLSYRGADVFILAFSLISKA-SYENVSKKWIPELKHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPISTAQGEELRK  148 (197)
Q Consensus        70 ~~~~~~~~~~~~i~v~d~~~~~-s~~~~~~~~~~~i~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~  148 (197)
                      +....+.++|.+++|+|+.++. ....+ ..|+.....  .++|+++|+||+|+.....            .........
T Consensus        82 L~R~~~aNvD~vLlV~d~~~p~~~~~~L-dR~L~~a~~--~~ip~ILVlNK~DLv~~~~------------~~~~~~~~~  146 (352)
T PRK12289         82 LDRPPVANADQILLVFALAEPPLDPWQL-SRFLVKAES--TGLEIVLCLNKADLVSPTE------------QQQWQDRLQ  146 (352)
T ss_pred             eechhhhcCCEEEEEEECCCCCCCHHHH-HHHHHHHHH--CCCCEEEEEEchhcCChHH------------HHHHHHHHH
Confidence            3344588999999999999876 33344 566665543  3899999999999954221            111222334


Q ss_pred             HhCCCceEEeccCCCCCHHHHHHHHHHH
Q 036449          149 LIGAPAYIECSSKTQQNVKAVFDAAIRV  176 (197)
Q Consensus       149 ~~~~~~~~~~sa~~~~~i~~l~~~i~~~  176 (197)
                      ..+. .++.+||+++.|++++++.+...
T Consensus       147 ~~g~-~v~~iSA~tg~GI~eL~~~L~~k  173 (352)
T PRK12289        147 QWGY-QPLFISVETGIGLEALLEQLRNK  173 (352)
T ss_pred             hcCC-eEEEEEcCCCCCHHHHhhhhccc
Confidence            5676 78999999999999999988653

>KOG2486 consensus Predicted GTPase [General function prediction only]

Probab=98.96  E-value=1.7e-09  Score=78.03  Aligned_cols=166  Identities=17%  Similarity=0.043  Sum_probs=94.6

Q ss_pred             CceeEEEEEcCCCCCHHHHHHHHhhCCCCCCCCC-ceeeeeeEEEEECCeEEEEEEEeCCC----------ccccccccc
Q 036449            4 SRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVP-TVFDNFSANVVVNGSTVNLGLWDTAG----------QEDYNRLRP   72 (197)
Q Consensus         4 ~~~~~i~v~G~~~~GKstli~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~i~D~~G----------~~~~~~~~~   72 (197)
                      .+..++++.|.+++|||+|++-++.......... ..+.+......--+  -.+.+.|.||          ..++..+..
T Consensus       134 ~~~pe~~~~g~SNVGKSSLln~~~r~k~~~~t~k~K~g~Tq~in~f~v~--~~~~~vDlPG~~~a~y~~~~~~d~~~~t~  211 (320)
T KOG2486|consen  134 DKRPELAFYGRSNVGKSSLLNDLVRVKNIADTSKSKNGKTQAINHFHVG--KSWYEVDLPGYGRAGYGFELPADWDKFTK  211 (320)
T ss_pred             CCCceeeeecCCcccHHHHHhhhhhhhhhhhhcCCCCccceeeeeeecc--ceEEEEecCCcccccCCccCcchHhHhHH
Confidence            4568999999999999999998887654433222 33333333333223  3466899999          122333444


Q ss_pred             cCcCCCc---EEEEEEeCCCchhHHHHHHHHHHHHhhhCCCCCEEEEeeCCcccCCcccccCCCCCCcc-cHHHHHHHHH
Q 036449           73 LSYRGAD---VFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPI-STAQGEELRK  148 (197)
Q Consensus        73 ~~~~~~~---~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~-~~~~~~~~~~  148 (197)
                      .|+.+.+   -+.+.+|++-+-.-.+.  ..++++.+.  +.|+.+|.||+|...........+..... .....-+..-
T Consensus       212 ~Y~leR~nLv~~FLLvd~sv~i~~~D~--~~i~~~ge~--~VP~t~vfTK~DK~k~~~~~~kKp~~~i~~~f~~l~~~~f  287 (320)
T KOG2486|consen  212 SYLLERENLVRVFLLVDASVPIQPTDN--PEIAWLGEN--NVPMTSVFTKCDKQKKVKRTGKKPGLNIKINFQGLIRGVF  287 (320)
T ss_pred             HHHHhhhhhheeeeeeeccCCCCCCCh--HHHHHHhhc--CCCeEEeeehhhhhhhccccccCccccceeehhhccccce
Confidence            4444333   44566677654322222  344556566  89999999999986532211111111000 0111111111


Q ss_pred             HhCCCceEEeccCCCCCHHHHHHHHHHH
Q 036449          149 LIGAPAYIECSSKTQQNVKAVFDAAIRV  176 (197)
Q Consensus       149 ~~~~~~~~~~sa~~~~~i~~l~~~i~~~  176 (197)
                      ... .+.+-+|+.++.|+++++-.+.+.
T Consensus       288 ~~~-~Pw~~~Ssvt~~Grd~Ll~~i~q~  314 (320)
T KOG2486|consen  288 LVD-LPWIYVSSVTSLGRDLLLLHIAQL  314 (320)
T ss_pred             ecc-CCceeeecccccCceeeeeehhhh
Confidence            111 256779999999999998887764

>KOG1547 consensus Septin CDC10 and related P-loop GTPases [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms; Cytoskeleton]

Probab=98.94  E-value=1.4e-08  Score=71.92  Aligned_cols=114  Identities=17%  Similarity=0.173  Sum_probs=67.4

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHhhCCCCC---------CCCCceeeee-eEEEEECCeEEEEEEEeCCCcc----------
Q 036449            6 FIKCVTVGDGAVGKTCLLISYTSNTFPT---------DYVPTVFDNF-SANVVVNGSTVNLGLWDTAGQE----------   65 (197)
Q Consensus         6 ~~~i~v~G~~~~GKstli~~~~~~~~~~---------~~~~~~~~~~-~~~~~~~~~~~~~~i~D~~G~~----------   65 (197)
                      .++|+|+|.+|.|||||++.++......         .++.|+.-.. +..+.-++...+++++||||--          
T Consensus        46 ~FNIMVVgqSglgkstlinTlf~s~v~~~s~~~~~~~p~pkT~eik~~thvieE~gVklkltviDTPGfGDqInN~ncWe  125 (336)
T KOG1547|consen   46 DFNIMVVGQSGLGKSTLINTLFKSHVSDSSSSDNSAEPIPKTTEIKSITHVIEEKGVKLKLTVIDTPGFGDQINNDNCWE  125 (336)
T ss_pred             ceEEEEEecCCCCchhhHHHHHHHHHhhccCCCcccCcccceEEEEeeeeeeeecceEEEEEEecCCCcccccCccchhH
Confidence            4899999999999999999887543322         1122222111 2223346777889999999911          


Q ss_pred             ----------------ccccccccCcC--CCcEEEEEEeCCCchhHHHHHHHHHHHHhhhCCCCCEEEEeeCCccc
Q 036449           66 ----------------DYNRLRPLSYR--GADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLR  123 (197)
Q Consensus        66 ----------------~~~~~~~~~~~--~~~~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~~~ivv~nK~D~~  123 (197)
                                      +....+...+.  .+|.++|.+-.+. .++..+.-.+++.+..-   ..++=|.-|.|-.
T Consensus       126 PI~kyIneQye~yL~eElni~R~kripDTRVHcclyFi~ptG-hsLrplDieflkrLt~v---vNvvPVIakaDtl  197 (336)
T KOG1547|consen  126 PIEKYINEQYEQYLREELNIAREKRIPDTRVHCCLYFIPPTG-HSLRPLDIEFLKRLTEV---VNVVPVIAKADTL  197 (336)
T ss_pred             HHHHHHHHHHHHHHHHHHhHHhhhcCCCceEEEEEEEeCCCC-CccCcccHHHHHHHhhh---heeeeeEeecccc
Confidence                            11122222333  3678888877653 33333323455555544   4566667788864

>KOG2655 consensus Septin family protein (P-loop GTPase) [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton; Intracellular trafficking, secretion, and vesicular transport]

Probab=98.94  E-value=3.7e-08  Score=74.38  Aligned_cols=115  Identities=22%  Similarity=0.308  Sum_probs=70.5

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHhhCCCCCC--------CCC-ce-eeeeeEEEEECCeEEEEEEEeCCCccc---------
Q 036449            6 FIKCVTVGDGAVGKTCLLISYTSNTFPTD--------YVP-TV-FDNFSANVVVNGSTVNLGLWDTAGQED---------   66 (197)
Q Consensus         6 ~~~i~v~G~~~~GKstli~~~~~~~~~~~--------~~~-~~-~~~~~~~~~~~~~~~~~~i~D~~G~~~---------   66 (197)
                      .++++++|++|.|||||+|.|+...+..+        ..+ +. -......+.-+|..+.++++||||--+         
T Consensus        21 ~ftlmvvG~sGlGKsTfiNsLf~~~l~~~~~~~~~~~~~~~t~~i~~~~~~iee~g~~l~LtvidtPGfGD~vdns~~w~  100 (366)
T KOG2655|consen   21 DFTLMVVGESGLGKSTFINSLFLTDLSGNREVPGASERIKETVEIESTKVEIEENGVKLNLTVIDTPGFGDAVDNSNCWR  100 (366)
T ss_pred             ceEEEEecCCCccHHHHHHHHHhhhccCCcccCCcccCccccceeeeeeeeecCCCeEEeeEEeccCCCcccccccccch
Confidence            38999999999999999999987755433        111 11 111122233357788999999999110         


Q ss_pred             ------------c----ccccccCcC--CCcEEEEEEeCCCc-hhHHHHHHHHHHHHhhhCCCCCEEEEeeCCcccCC
Q 036449           67 ------------Y----NRLRPLSYR--GADVFILAFSLISK-ASYENVSKKWIPELKHYAPGVPIILVGTKLDLRDD  125 (197)
Q Consensus        67 ------------~----~~~~~~~~~--~~~~~i~v~d~~~~-~s~~~~~~~~~~~i~~~~~~~~~ivv~nK~D~~~~  125 (197)
                                  |    .......+.  .+|+++|.+..+.. ...-++  .++..+...   +.+|=|..|.|....
T Consensus       101 pi~~yi~~q~~~yl~~E~~~~R~~~~D~RVH~cLYFI~P~ghgL~p~Di--~~Mk~l~~~---vNiIPVI~KaD~lT~  173 (366)
T KOG2655|consen  101 PIVNYIDSQFDQYLDEESRLNRSKIKDNRVHCCLYFISPTGHGLKPLDI--EFMKKLSKK---VNLIPVIAKADTLTK  173 (366)
T ss_pred             hhhHHHHHHHHHHHhhhccCCcccccCCceEEEEEEeCCCCCCCcHhhH--HHHHHHhcc---ccccceeeccccCCH
Confidence                        1    011112222  47899999887543 333333  444545444   677777789998654

>TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH

Probab=98.92  E-value=5e-09  Score=80.66  Aligned_cols=96  Identities=22%  Similarity=0.373  Sum_probs=70.0

Q ss_pred             ccccccccccCcCCCcEEEEEEeCCCchhHHHHHHHHHHHHhhhCCCCCEEEEeeCCcccCCcccccCCCCCCcccHHHH
Q 036449           64 QEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPISTAQG  143 (197)
Q Consensus        64 ~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~  143 (197)
                      .+.|..+...+...++++++|+|+.+..      ..|.+.+.....+.|+++|+||+|+.+..           ...+..
T Consensus        50 ~e~f~~~l~~~~~~~~~Il~VvD~~d~~------~s~~~~l~~~~~~~piilV~NK~DLl~k~-----------~~~~~~  112 (360)
T TIGR03597        50 DDDFLNLLNSLGDSNALIVYVVDIFDFE------GSLIPELKRFVGGNPVLLVGNKIDLLPKS-----------VNLSKI  112 (360)
T ss_pred             HHHHHHHHhhcccCCcEEEEEEECcCCC------CCccHHHHHHhCCCCEEEEEEchhhCCCC-----------CCHHHH
Confidence            4567788888888999999999997664      23444454444478999999999996532           122222


Q ss_pred             H----HHHHHhCCC--ceEEeccCCCCCHHHHHHHHHHH
Q 036449          144 E----ELRKLIGAP--AYIECSSKTQQNVKAVFDAAIRV  176 (197)
Q Consensus       144 ~----~~~~~~~~~--~~~~~sa~~~~~i~~l~~~i~~~  176 (197)
                      .    ++++..+..  .++.+||+++.|++++++.|.+.
T Consensus       113 ~~~l~~~~k~~g~~~~~i~~vSAk~g~gv~eL~~~l~~~  151 (360)
T TIGR03597       113 KEWMKKRAKELGLKPVDIILVSAKKGNGIDELLDKIKKA  151 (360)
T ss_pred             HHHHHHHHHHcCCCcCcEEEecCCCCCCHHHHHHHHHHH
Confidence            2    345566652  48999999999999999999764

This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli.

>PRK12288 GTPase RsgA; Reviewed

Probab=98.90  E-value=1.3e-08  Score=77.79  Aligned_cols=89  Identities=17%  Similarity=0.249  Sum_probs=66.4

Q ss_pred             cCCCcEEEEEEeCCCchhHHHHHHHHHHHHhhhCCCCCEEEEeeCCcccCCcccccCCCCCCcccHHHHHHHHHHhCCCc
Q 036449           75 YRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPISTAQGEELRKLIGAPA  154 (197)
Q Consensus        75 ~~~~~~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  154 (197)
                      ..++|.+++|++++...++..+ ..|+......  ++|.++|+||+|+.+...         ...........+..+. +
T Consensus       118 aANvD~vlIV~s~~p~~s~~~L-dr~L~~a~~~--~i~~VIVlNK~DL~~~~~---------~~~~~~~~~~y~~~g~-~  184 (347)
T PRK12288        118 AANIDQIVIVSAVLPELSLNII-DRYLVACETL--GIEPLIVLNKIDLLDDEG---------RAFVNEQLDIYRNIGY-R  184 (347)
T ss_pred             EEEccEEEEEEeCCCCCCHHHH-HHHHHHHHhc--CCCEEEEEECccCCCcHH---------HHHHHHHHHHHHhCCC-e
Confidence            4679999999999888888887 7787766543  799999999999965321         0011222233345666 8


Q ss_pred             eEEeccCCCCCHHHHHHHHHHH
Q 036449          155 YIECSSKTQQNVKAVFDAAIRV  176 (197)
Q Consensus       155 ~~~~sa~~~~~i~~l~~~i~~~  176 (197)
                      ++++||+++.|++++++.|...
T Consensus       185 v~~vSA~tg~GideL~~~L~~k  206 (347)
T PRK12288        185 VLMVSSHTGEGLEELEAALTGR  206 (347)
T ss_pred             EEEEeCCCCcCHHHHHHHHhhC
Confidence            9999999999999999998753

>cd01857 HSR1_MMR1 HSR1/MMR1

Probab=98.88  E-value=6e-09  Score=69.78  Aligned_cols=54  Identities=17%  Similarity=0.144  Sum_probs=35.8

Q ss_pred             EEEEEcCCCCCHHHHHHHHhhCCCCCCCCCceeeeeeEEEEECCeEEEEEEEeCCCc
Q 036449            8 KCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQ   64 (197)
Q Consensus         8 ~i~v~G~~~~GKstli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~   64 (197)
                      +++++|.+|+|||||+|++....................+.+++   .+.+|||||.
T Consensus        85 ~~~~~G~~~vGKstlin~l~~~~~~~~~~~~~~~~~~~~~~~~~---~~~i~DtpG~  138 (141)
T cd01857          85 TIGLVGYPNVGKSSLINALVGKKKVSVSATPGKTKHFQTIFLTP---TITLCDCPGL  138 (141)
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCceeeCCCCCcccceEEEEeCC---CEEEEECCCc
Confidence            79999999999999999999776532111111112223344443   3679999995

Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus.

>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components

Probab=98.86  E-value=4.9e-09  Score=75.47  Aligned_cols=101  Identities=14%  Similarity=0.147  Sum_probs=58.5

Q ss_pred             EEEEEEeCCC--ccccccccccCcCCCcEEEEEEeCCCchhHHHHHHHHHHHHhhhCCCCCEEEEeeCCcccCCcccccC
Q 036449           54 VNLGLWDTAG--QEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLRDDKQFFID  131 (197)
Q Consensus        54 ~~~~i~D~~G--~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~~~ivv~nK~D~~~~~~~~~~  131 (197)
                      +.+.|++|.|  |.+..     ...-+|.+++|.-..-.+..+.+..-+++.        +=++|+||.|......    
T Consensus       122 ~D~IiiETVGvGQsE~~-----I~~~aD~~v~v~~Pg~GD~iQ~~KaGimEi--------aDi~vVNKaD~~gA~~----  184 (266)
T PF03308_consen  122 FDVIIIETVGVGQSEVD-----IADMADTVVLVLVPGLGDEIQAIKAGIMEI--------ADIFVVNKADRPGADR----  184 (266)
T ss_dssp             -SEEEEEEESSSTHHHH-----HHTTSSEEEEEEESSTCCCCCTB-TTHHHH---------SEEEEE--SHHHHHH----
T ss_pred             CCEEEEeCCCCCccHHH-----HHHhcCeEEEEecCCCccHHHHHhhhhhhh--------ccEEEEeCCChHHHHH----
Confidence            3455777776  33322     244589999999887666655542222322        3378999999754321    


Q ss_pred             CCCCCcccHHHHHHHHHHhC------CCceEEeccCCCCCHHHHHHHHHHHHc
Q 036449          132 HPGAVPISTAQGEELRKLIG------APAYIECSSKTQQNVKAVFDAAIRVVL  178 (197)
Q Consensus       132 ~~~~~~~~~~~~~~~~~~~~------~~~~~~~sa~~~~~i~~l~~~i~~~~~  178 (197)
                             ...+.+.......      .++++.+||.++.|++++++.|.+...
T Consensus       185 -------~~~~l~~~l~l~~~~~~~W~ppV~~tsA~~~~Gi~eL~~~i~~~~~  230 (266)
T PF03308_consen  185 -------TVRDLRSMLHLLREREDGWRPPVLKTSALEGEGIDELWEAIDEHRD  230 (266)
T ss_dssp             -------HHHHHHHHHHHCSTSCTSB--EEEEEBTTTTBSHHHHHHHHHHHHH
T ss_pred             -------HHHHHHHHHhhccccccCCCCCEEEEEeCCCCCHHHHHHHHHHHHH
Confidence                   1122222111111      248999999999999999999987543

In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.

>cd01900 YchF YchF subfamily

Probab=98.85  E-value=3.7e-09  Score=77.92  Aligned_cols=80  Identities=20%  Similarity=0.132  Sum_probs=51.9

Q ss_pred             EEEEcCCCCCHHHHHHHHhhCCC-CCCCCCceeeeeeEEEEECCe---------------EEEEEEEeCCCccccc----
Q 036449            9 CVTVGDGAVGKTCLLISYTSNTF-PTDYVPTVFDNFSANVVVNGS---------------TVNLGLWDTAGQEDYN----   68 (197)
Q Consensus         9 i~v~G~~~~GKstli~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~---------------~~~~~i~D~~G~~~~~----   68 (197)
                      |.++|.++||||||++++.+... ..+++.++.+.......+.+.               ...++++|+||...-.    
T Consensus         1 igivG~PN~GKSTLfn~Lt~~~~~~~n~pftTi~p~~g~v~v~d~r~~~l~~~~~~~k~~~~~i~lvD~pGl~~~a~~~~   80 (274)
T cd01900           1 IGIVGLPNVGKSTLFNALTKAGAEAANYPFCTIEPNVGIVPVPDERLDKLAEIVKPKKIVPATIEFVDIAGLVKGASKGE   80 (274)
T ss_pred             CeEeCCCCCcHHHHHHHHhCCCCccccccccchhceeeeEEeccchhhhHHHHhCCceeeeeEEEEEECCCcCCCCchhh
Confidence            57999999999999999998665 344555553333333333332               1258899999953211    


Q ss_pred             cc---cccCcCCCcEEEEEEeCC
Q 036449           69 RL---RPLSYRGADVFILAFSLI   88 (197)
Q Consensus        69 ~~---~~~~~~~~~~~i~v~d~~   88 (197)
                      .+   ....++.+|++++|+|..
T Consensus        81 glg~~fL~~i~~~D~li~VV~~f  103 (274)
T cd01900          81 GLGNKFLSHIREVDAIAHVVRCF  103 (274)
T ss_pred             HHHHHHHHHHHhCCEEEEEEeCc
Confidence            11   112356799999999874

YchF is a member of the Obg family, which includes four other subfamilies of GTPases: Obg, DRG, Ygr210, and NOG1. Obg is an essential gene that is involved in DNA replication in C. crescentus and Streptomyces griseus and is associated with the ribosome. Several members of the family, including YchF, possess the TGS domain related to the RNA-binding proteins. Experimental data and genomic analysis suggest that YchF may be part of a nucleoprotein complex and may function as a GTP-dependent translational factor.

>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]

Probab=98.85  E-value=2.7e-08  Score=72.77  Aligned_cols=108  Identities=14%  Similarity=0.094  Sum_probs=62.2

Q ss_pred             EEEEEEeCCCccccccccccCcCCCcEEEEEEeCCCchhHHHHHHHHHHHHhhhCCCCCEEEEeeCCcccCCcccccCCC
Q 036449           54 VNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLRDDKQFFIDHP  133 (197)
Q Consensus        54 ~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~~~ivv~nK~D~~~~~~~~~~~~  133 (197)
                      +.+.|++|.|-=.   .......-+|.++++.-..-++..+-+..-+++        +.=++|.||.|.......     
T Consensus       144 ~DvIIVETVGvGQ---sev~I~~~aDt~~~v~~pg~GD~~Q~iK~GimE--------iaDi~vINKaD~~~A~~a-----  207 (323)
T COG1703         144 YDVIIVETVGVGQ---SEVDIANMADTFLVVMIPGAGDDLQGIKAGIME--------IADIIVINKADRKGAEKA-----  207 (323)
T ss_pred             CCEEEEEecCCCc---chhHHhhhcceEEEEecCCCCcHHHHHHhhhhh--------hhheeeEeccChhhHHHH-----
Confidence            4456778877311   112234458988888776666655555322222        234789999996543210     


Q ss_pred             CCCcccHHHHHHHH----HHh-CCCceEEeccCCCCCHHHHHHHHHHHHcCC
Q 036449          134 GAVPISTAQGEELR----KLI-GAPAYIECSSKTQQNVKAVFDAAIRVVLQP  180 (197)
Q Consensus       134 ~~~~~~~~~~~~~~----~~~-~~~~~~~~sa~~~~~i~~l~~~i~~~~~~~  180 (197)
                       .  .....+..+.    ... =.++.+.+||.+|+|++++++.|.......
T Consensus       208 -~--r~l~~al~~~~~~~~~~~W~ppv~~t~A~~g~Gi~~L~~ai~~h~~~~  256 (323)
T COG1703         208 -A--RELRSALDLLREVWRENGWRPPVVTTSALEGEGIDELWDAIEDHRKFL  256 (323)
T ss_pred             -H--HHHHHHHHhhcccccccCCCCceeEeeeccCCCHHHHHHHHHHHHHHH
Confidence             0  0001111111    111 123789999999999999999999765443

>COG5258 GTPBP1 GTPase [General function prediction only]

Probab=98.84  E-value=4e-08  Score=74.13  Aligned_cols=167  Identities=19%  Similarity=0.122  Sum_probs=97.4

Q ss_pred             CCceeEEEEEcCCCCCHHHHHHHHhhCCCCCCCCCce------------e---e-ee-------eEEEEE----------
Q 036449            3 ASRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTV------------F---D-NF-------SANVVV----------   49 (197)
Q Consensus         3 ~~~~~~i~v~G~~~~GKstli~~~~~~~~~~~~~~~~------------~---~-~~-------~~~~~~----------   49 (197)
                      .+..+.|.++|+.+.|||||+-.+..+...+..-.+-            +   + .+       ......          
T Consensus       114 ~~~hv~Vg~aGhVdhGKSTlvG~LvtG~~DDG~G~tR~~ldv~kHEverGlsa~iS~~v~Gf~dgk~~rlknPld~aE~~  193 (527)
T COG5258         114 APEHVLVGVAGHVDHGKSTLVGVLVTGRLDDGDGATRSYLDVQKHEVERGLSADISLRVYGFDDGKVVRLKNPLDEAEKA  193 (527)
T ss_pred             CCceEEEEEeccccCCcceEEEEEEecCCCCCCcchhhhhhhhhHHHhhccccceeEEEEEecCCceEeecCcccHHHHh
Confidence            4567899999999999999997776554433111110            0   0 00       000010          


Q ss_pred             ---CCeEEEEEEEeCCCccccccc--cccCcCCCcEEEEEEeCCCchhHHHHHHHHHHHHhhhCCCCCEEEEeeCCcccC
Q 036449           50 ---NGSTVNLGLWDTAGQEDYNRL--RPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLRD  124 (197)
Q Consensus        50 ---~~~~~~~~i~D~~G~~~~~~~--~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~~~ivv~nK~D~~~  124 (197)
                         +..+-.+.|.|+.||+.|.+.  ...+-.+.|..++++-+++..+--.  ++-+-.....  +.|++++.||+|+.+
T Consensus       194 ~vv~~aDklVsfVDtvGHEpwLrTtirGL~gqk~dYglLvVaAddG~~~~t--kEHLgi~~a~--~lPviVvvTK~D~~~  269 (527)
T COG5258         194 AVVKRADKLVSFVDTVGHEPWLRTTIRGLLGQKVDYGLLVVAADDGVTKMT--KEHLGIALAM--ELPVIVVVTKIDMVP  269 (527)
T ss_pred             HhhhhcccEEEEEecCCccHHHHHHHHHHhccccceEEEEEEccCCcchhh--hHhhhhhhhh--cCCEEEEEEecccCc
Confidence               111234779999999988753  3445667999999999988754322  2333333333  789999999999976


Q ss_pred             Ccccc-----------cCCCCCCcc-cHHHH--HHHHH--HhCCCceEEeccCCCCCHHHHHHHH
Q 036449          125 DKQFF-----------IDHPGAVPI-STAQG--EELRK--LIGAPAYIECSSKTQQNVKAVFDAA  173 (197)
Q Consensus       125 ~~~~~-----------~~~~~~~~~-~~~~~--~~~~~--~~~~~~~~~~sa~~~~~i~~l~~~i  173 (197)
                      +....           .-..-+..+ +....  ...+-  ..+..|++.+|+.+|+|++-|.+.+
T Consensus       270 ddr~~~v~~ei~~~Lk~v~Rip~~vk~~~d~v~aa~a~k~~~~vvPi~~tSsVTg~GldlL~e~f  334 (527)
T COG5258         270 DDRFQGVVEEISALLKRVGRIPLIVKDTDDVVLAAKAMKAGRGVVPIFYTSSVTGEGLDLLDEFF  334 (527)
T ss_pred             HHHHHHHHHHHHHHHHHhcccceeeeccchhHHhhhhhhcCCceEEEEEEecccCccHHHHHHHH
Confidence            53211           000001111 11111  11112  2234588999999999998554443

>COG0012 Predicted GTPase, probable translation factor [Translation, ribosomal structure and biogenesis]

Probab=98.84  E-value=1.2e-07  Score=71.70  Aligned_cols=83  Identities=20%  Similarity=0.133  Sum_probs=54.8

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHhhCCCC-CCCCCceeeeeeEEEEE------------C----CeEEEEEEEeCCCcc---
Q 036449            6 FIKCVTVGDGAVGKTCLLISYTSNTFP-TDYVPTVFDNFSANVVV------------N----GSTVNLGLWDTAGQE---   65 (197)
Q Consensus         6 ~~~i~v~G~~~~GKstli~~~~~~~~~-~~~~~~~~~~~~~~~~~------------~----~~~~~~~i~D~~G~~---   65 (197)
                      .+++.++|.|+||||||.+++...... .+|+.++-+-......+            .    -....+.++|.+|.-   
T Consensus         2 ~l~~GIVGlPNVGKSTlFnAlT~~~a~~aNYPF~TIePN~Giv~v~d~rl~~L~~~~~c~~k~~~~~ve~vDIAGLV~GA   81 (372)
T COG0012           2 SLKIGIVGLPNVGKSTLFNALTKAGAEIANYPFCTIEPNVGVVYVPDCRLDELAEIVKCPPKIRPAPVEFVDIAGLVKGA   81 (372)
T ss_pred             CceeEEecCCCCcHHHHHHHHHcCCccccCCCcccccCCeeEEecCchHHHHHHHhcCCCCcEEeeeeEEEEecccCCCc
Confidence            378999999999999999999987753 56666662222111111            1    123568899999931   


Q ss_pred             ----ccccccccCcCCCcEEEEEEeCC
Q 036449           66 ----DYNRLRPLSYRGADVFILAFSLI   88 (197)
Q Consensus        66 ----~~~~~~~~~~~~~~~~i~v~d~~   88 (197)
                          -.......-++.+|+++-|+|..
T Consensus        82 s~GeGLGNkFL~~IRevdaI~hVVr~f  108 (372)
T COG0012          82 SKGEGLGNKFLDNIREVDAIIHVVRCF  108 (372)
T ss_pred             ccCCCcchHHHHhhhhcCeEEEEEEec
Confidence                11222223466799999999986

>KOG0460 consensus Mitochondrial translation elongation factor Tu [Translation, ribosomal structure and biogenesis]

Probab=98.83  E-value=3.9e-08  Score=73.04  Aligned_cols=149  Identities=20%  Similarity=0.144  Sum_probs=92.6

Q ss_pred             CCceeEEEEEcCCCCCHHHHHHHHhhC----CC------CC-CCCCc---eeeee-eEEEEECCeEEEEEEEeCCCcccc
Q 036449            3 ASRFIKCVTVGDGAVGKTCLLISYTSN----TF------PT-DYVPT---VFDNF-SANVVVNGSTVNLGLWDTAGQEDY   67 (197)
Q Consensus         3 ~~~~~~i~v~G~~~~GKstli~~~~~~----~~------~~-~~~~~---~~~~~-~~~~~~~~~~~~~~i~D~~G~~~~   67 (197)
                      +.+.++|--+|+..-|||||..++..-    ..      .+ +..|.   -+... ..++.++-....+--.|||||.+|
T Consensus        51 ~KPHvNVGTIGHVDHGKTTLTaAITkila~~g~A~~~kydeID~APEEkaRGITIn~aHveYeTa~RhYaH~DCPGHADY  130 (449)
T KOG0460|consen   51 DKPHVNVGTIGHVDHGKTTLTAAITKILAEKGGAKFKKYDEIDKAPEEKARGITINAAHVEYETAKRHYAHTDCPGHADY  130 (449)
T ss_pred             CCCcccccccccccCCchhHHHHHHHHHHhccccccccHhhhhcChhhhhccceEeeeeeeeeccccccccCCCCchHHH
Confidence            356789999999999999999776531    11      00 00010   01111 122233322234457899999999


Q ss_pred             ccccccCcCCCcEEEEEEeCCCchhHHHHHHHHHHHHhhhCCCCCEEEEeeCCcccCCcccccCCCCCCcccHHHHHHHH
Q 036449           68 NRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPISTAQGEELR  147 (197)
Q Consensus        68 ~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~  147 (197)
                      -........+.|+.|+|+..+|..=.+.- ..++  +.+...=..++++.||.|+.++.+       ..++-+.+.+++.
T Consensus       131 IKNMItGaaqMDGaILVVaatDG~MPQTr-EHlL--LArQVGV~~ivvfiNKvD~V~d~e-------~leLVEmE~RElL  200 (449)
T KOG0460|consen  131 IKNMITGAAQMDGAILVVAATDGPMPQTR-EHLL--LARQVGVKHIVVFINKVDLVDDPE-------MLELVEMEIRELL  200 (449)
T ss_pred             HHHhhcCccccCceEEEEEcCCCCCcchH-HHHH--HHHHcCCceEEEEEecccccCCHH-------HHHHHHHHHHHHH
Confidence            88887788889999999999997544433 1111  222222245788899999985432       2334456778888


Q ss_pred             HHhCCC----ceEEeccC
Q 036449          148 KLIGAP----AYIECSSK  161 (197)
Q Consensus       148 ~~~~~~----~~~~~sa~  161 (197)
                      ..+++.    |++.-||.
T Consensus       201 se~gf~Gd~~PvI~GSAL  218 (449)
T KOG0460|consen  201 SEFGFDGDNTPVIRGSAL  218 (449)
T ss_pred             HHcCCCCCCCCeeecchh
Confidence            888763    56765543

>cd01858 NGP_1 NGP-1

Probab=98.81  E-value=3e-08  Score=67.59  Aligned_cols=91  Identities=16%  Similarity=0.040  Sum_probs=59.0

Q ss_pred             CcCCCcEEEEEEeCCCchhHHHHHHHHHHHHhhhCCCCCEEEEeeCCcccCCcccccCCCCCCcccHHHHHHHHHHhCCC
Q 036449           74 SYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPISTAQGEELRKLIGAP  153 (197)
Q Consensus        74 ~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  153 (197)
                      .+..+|.+++|+|+.++....+  ..+...+....++.|+++|+||+|+.+...           .......+.+.+.. 
T Consensus         5 ~l~~aD~il~VvD~~~p~~~~~--~~i~~~l~~~~~~~p~ilVlNKiDl~~~~~-----------~~~~~~~~~~~~~~-   70 (157)
T cd01858           5 VIDSSDVVIQVLDARDPMGTRC--KHVEEYLKKEKPHKHLIFVLNKCDLVPTWV-----------TARWVKILSKEYPT-   70 (157)
T ss_pred             hhhhCCEEEEEEECCCCccccC--HHHHHHHHhccCCCCEEEEEEchhcCCHHH-----------HHHHHHHHhcCCcE-
Confidence            3678999999999998743221  233344433334689999999999954221           11122223222222 


Q ss_pred             ceEEeccCCCCCHHHHHHHHHHHHc
Q 036449          154 AYIECSSKTQQNVKAVFDAAIRVVL  178 (197)
Q Consensus       154 ~~~~~sa~~~~~i~~l~~~i~~~~~  178 (197)
                      ..+.+||+++.|++++.+.+.+.+.
T Consensus        71 ~~~~iSa~~~~~~~~L~~~l~~~~~   95 (157)
T cd01858          71 IAFHASINNPFGKGSLIQLLRQFSK   95 (157)
T ss_pred             EEEEeeccccccHHHHHHHHHHHHh
Confidence            2477999999999999999977643

Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.

>cd01858 NGP_1 NGP-1

Probab=98.76  E-value=3.4e-08  Score=67.37  Aligned_cols=54  Identities=17%  Similarity=0.134  Sum_probs=34.9

Q ss_pred             ceeEEEEEcCCCCCHHHHHHHHhhCCCC--CCCCCceeeeeeEEEEECCeEEEEEEEeCCC
Q 036449            5 RFIKCVTVGDGAVGKTCLLISYTSNTFP--TDYVPTVFDNFSANVVVNGSTVNLGLWDTAG   63 (197)
Q Consensus         5 ~~~~i~v~G~~~~GKstli~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G   63 (197)
                      +.++|+++|.+|+|||||+|++.+....  ...+.++..  ...+..++   .+.++||||
T Consensus       101 ~~~~v~~~G~~nvGKStliN~l~~~~~~~~~~~~g~T~~--~~~~~~~~---~~~liDtPG  156 (157)
T cd01858         101 KQISVGFIGYPNVGKSSIINTLRSKKVCKVAPIPGETKV--WQYITLMK---RIYLIDCPG  156 (157)
T ss_pred             cceEEEEEeCCCCChHHHHHHHhcCCceeeCCCCCeeEe--EEEEEcCC---CEEEEECcC
Confidence            4678999999999999999999875432  222222211  11222222   255999999

Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.

>KOG0410 consensus Predicted GTP binding protein [General function prediction only]

Probab=98.75  E-value=1.6e-08  Score=74.53  Aligned_cols=151  Identities=18%  Similarity=0.198  Sum_probs=93.7

Q ss_pred             CceeEEEEEcCCCCCHHHHHHHHhhCCCCCC-CCCceeeeeeEEEEE-CCeEEEEEEEeCCCc---------cccccccc
Q 036449            4 SRFIKCVTVGDGAVGKTCLLISYTSNTFPTD-YVPTVFDNFSANVVV-NGSTVNLGLWDTAGQ---------EDYNRLRP   72 (197)
Q Consensus         4 ~~~~~i~v~G~~~~GKstli~~~~~~~~~~~-~~~~~~~~~~~~~~~-~~~~~~~~i~D~~G~---------~~~~~~~~   72 (197)
                      ....-|.|+|-.++|||||++++..-....+ ....+.+........ +|  ..+.+.||-|-         ..|.+...
T Consensus       176 ~s~pviavVGYTNaGKsTLikaLT~Aal~p~drLFATLDpT~h~a~Lpsg--~~vlltDTvGFisdLP~~LvaAF~ATLe  253 (410)
T KOG0410|consen  176 ESSPVIAVVGYTNAGKSTLIKALTKAALYPNDRLFATLDPTLHSAHLPSG--NFVLLTDTVGFISDLPIQLVAAFQATLE  253 (410)
T ss_pred             CCCceEEEEeecCccHHHHHHHHHhhhcCccchhheeccchhhhccCCCC--cEEEEeechhhhhhCcHHHHHHHHHHHH
Confidence            3456799999999999999999996554332 111121111111112 23  34558899882         12332222


Q ss_pred             cCcCCCcEEEEEEeCCCchhHHHHHHHHHHHHhhhC-CCCC----EEEEeeCCcccCCcccccCCCCCCcccHHHHHHHH
Q 036449           73 LSYRGADVFILAFSLISKASYENVSKKWIPELKHYA-PGVP----IILVGTKLDLRDDKQFFIDHPGAVPISTAQGEELR  147 (197)
Q Consensus        73 ~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~i~~~~-~~~~----~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~  147 (197)
                       -...+|.++-|.|+++|..-+.. ...+.-+.... |..|    ++=|-||.|..+...            .+      
T Consensus       254 -eVaeadlllHvvDiShP~ae~q~-e~Vl~vL~~igv~~~pkl~~mieVdnkiD~e~~~~------------e~------  313 (410)
T KOG0410|consen  254 -EVAEADLLLHVVDISHPNAEEQR-ETVLHVLNQIGVPSEPKLQNMIEVDNKIDYEEDEV------------EE------  313 (410)
T ss_pred             -HHhhcceEEEEeecCCccHHHHH-HHHHHHHHhcCCCcHHHHhHHHhhccccccccccC------------cc------
Confidence             23468999999999999776665 45555555553 3333    455668888755321            11      


Q ss_pred             HHhCCCceEEeccCCCCCHHHHHHHHHHHHcC
Q 036449          148 KLIGAPAYIECSSKTQQNVKAVFDAAIRVVLQ  179 (197)
Q Consensus       148 ~~~~~~~~~~~sa~~~~~i~~l~~~i~~~~~~  179 (197)
                      ..+   .-+.+||++|+|++++.+.+-..+..
T Consensus       314 E~n---~~v~isaltgdgl~el~~a~~~kv~~  342 (410)
T KOG0410|consen  314 EKN---LDVGISALTGDGLEELLKAEETKVAS  342 (410)
T ss_pred             ccC---CccccccccCccHHHHHHHHHHHhhh
Confidence            111   25678999999999999988776554

>cd04178 Nucleostemin_like Nucleostemin-like

Probab=98.74  E-value=3.7e-08  Score=68.01  Aligned_cols=54  Identities=22%  Similarity=0.185  Sum_probs=36.1

Q ss_pred             ceeEEEEEcCCCCCHHHHHHHHhhCCCC--CCCCCceeeeeeEEEEECCeEEEEEEEeCCC
Q 036449            5 RFIKCVTVGDGAVGKTCLLISYTSNTFP--TDYVPTVFDNFSANVVVNGSTVNLGLWDTAG   63 (197)
Q Consensus         5 ~~~~i~v~G~~~~GKstli~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G   63 (197)
                      ..++++++|.+++|||||+|++.+....  ...++++..  ...+.++.   .+.++||||
T Consensus       116 ~~~~~~~vG~pnvGKSslin~l~~~~~~~~~~~pg~T~~--~~~~~~~~---~~~l~DtPG  171 (172)
T cd04178         116 TSITVGVVGFPNVGKSSLINSLKRSRACNVGATPGVTKS--MQEVHLDK---KVKLLDSPG  171 (172)
T ss_pred             cCcEEEEEcCCCCCHHHHHHHHhCcccceecCCCCeEcc--eEEEEeCC---CEEEEECcC
Confidence            3489999999999999999999976542  222333321  12222322   467999999

Nucleostemin (NS) is a nucleolar protein that functions as a regulator of cell growth and proliferation in stem cells and in several types of cancer cells, but is not expressed in the differentiated cells of most mammalian adult tissues. NS shuttles between the nucleolus and nucleoplasm bidirectionally at a rate that is fast and independent of cell type. Lowering GTP levels decreases the nucleolar retention of NS, and expression of NS is abruptly down-regulated during differentiation prior to terminal cell division. Found only in eukaryotes, NS consists of an N-terminal basic domain, a coiled-coil domain, a GTP-binding domain, an intermediate domain, and a C-terminal acidic domain. Experimental evidence indicates that NS uses its GTP-binding property as a molecular switch to control the transition between the nucleolus and nucleoplasm, and this process involves interaction between the basic, GTP-binding, and intermediate domains of the

>KOG0463 consensus GTP-binding protein GP-1 [General function prediction only]

Probab=98.70  E-value=2.2e-07  Score=70.14  Aligned_cols=168  Identities=18%  Similarity=0.214  Sum_probs=89.0

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHhhCCCCC------------------CCCCceeeeeeE-------------------EEE
Q 036449            6 FIKCVTVGDGAVGKTCLLISYTSNTFPT------------------DYVPTVFDNFSA-------------------NVV   48 (197)
Q Consensus         6 ~~~i~v~G~~~~GKstli~~~~~~~~~~------------------~~~~~~~~~~~~-------------------~~~   48 (197)
                      ..+|+|+|...+|||||+-.+.++.+..                  ...+..+.....                   ...
T Consensus       133 E~RVAVVGNVDAGKSTLLGVLTHgeLDnGRG~ARqkLFRHKHEiESGRTSSVGNDILGFD~~GNvVNKPD~Hg~~LdWvk  212 (641)
T KOG0463|consen  133 EARVAVVGNVDAGKSTLLGVLTHGELDNGRGAARQKLFRHKHEIESGRTSSVGNDILGFDVHGNVVNKPDPHGHNLDWVK  212 (641)
T ss_pred             eEEEEEEecccCCcceeEeeeeecccccCccHHHHHHhhhhhhcccCccccccccceeeccccccccCCCCCCCccccee
Confidence            4799999999999999995544433221                  111111111100                   000


Q ss_pred             E-CCeEEEEEEEeCCCccccccccc--cCcCCCcEEEEEEeCCCchhHHHHHHHHHHHHhhhCCCCCEEEEeeCCcccCC
Q 036449           49 V-NGSTVNLGLWDTAGQEDYNRLRP--LSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLRDD  125 (197)
Q Consensus        49 ~-~~~~~~~~i~D~~G~~~~~~~~~--~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~~~ivv~nK~D~~~~  125 (197)
                      + .+..-.++|+|..|++.|.....  +.-+-.|..++++-.+-.--  -...+-+..--..  ..|+.+|++|+|.++.
T Consensus       213 Ice~saKviTFIDLAGHEkYLKTTvFGMTGH~PDf~MLMiGaNaGIi--GmTKEHLgLALaL--~VPVfvVVTKIDMCPA  288 (641)
T KOG0463|consen  213 ICEDSAKVITFIDLAGHEKYLKTTVFGMTGHMPDFTMLMIGANAGII--GMTKEHLGLALAL--HVPVFVVVTKIDMCPA  288 (641)
T ss_pred             eccccceeEEEEeccchhhhhheeeeccccCCCCceEEEecccccce--eccHHhhhhhhhh--cCcEEEEEEeeccCcH
Confidence            1 12234478999999999875443  33445788888887654311  0101111111112  6899999999999876


Q ss_pred             cccc---------cCCCCCCcc-----cHH----HHHHHHHHhCCCceEEeccCCCCCHHHHHHHHHHHHcC
Q 036449          126 KQFF---------IDHPGAVPI-----STA----QGEELRKLIGAPAYIECSSKTQQNVKAVFDAAIRVVLQ  179 (197)
Q Consensus       126 ~~~~---------~~~~~~~~~-----~~~----~~~~~~~~~~~~~~~~~sa~~~~~i~~l~~~i~~~~~~  179 (197)
                      +-..         ...+.-+.+     +.+    .+..|..+. .+|+|.+|..+|.|+. ++..+.+.+.-
T Consensus       289 NiLqEtmKll~rllkS~gcrK~PvlVrs~DDVv~~A~NF~Ser-~CPIFQvSNVtG~NL~-LLkmFLNlls~  358 (641)
T KOG0463|consen  289 NILQETMKLLTRLLKSPGCRKLPVLVRSMDDVVHAAVNFPSER-VCPIFQVSNVTGTNLP-LLKMFLNLLSL  358 (641)
T ss_pred             HHHHHHHHHHHHHhcCCCcccCcEEEecccceEEeeccCcccc-ccceEEeccccCCChH-HHHHHHhhcCc
Confidence            5311         000000000     000    011222222 2378999999999987 44445554443

>KOG1487 consensus GTP-binding protein DRG1 (ODN superfamily) [Signal transduction mechanisms]

Probab=98.70  E-value=2.7e-07  Score=66.27  Aligned_cols=87  Identities=18%  Similarity=0.214  Sum_probs=57.3

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhhCCC-CCCCCCceeeeeeEEEEECCeEEEEEEEeCCCcccc-------ccccccCcCCC
Q 036449            7 IKCVTVGDGAVGKTCLLISYTSNTF-PTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQEDY-------NRLRPLSYRGA   78 (197)
Q Consensus         7 ~~i~v~G~~~~GKstli~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~-------~~~~~~~~~~~   78 (197)
                      -+|-++|-|.+||||++..+.+... ...+..|+-.+......+.+  -.+++.|.||.-+=       ........+.|
T Consensus        60 a~vg~vgFPSvGksTl~~~l~g~~s~vasyefttl~~vpG~~~y~g--aKiqlldlpgiiegakdgkgrg~qviavartc  137 (358)
T KOG1487|consen   60 ARVGFVGFPSVGKSTLLSKLTGTFSEVAAYEFTTLTTVPGVIRYKG--AKIQLLDLPGIIEGAKDGKGRGKQVIAVARTC  137 (358)
T ss_pred             eeeeEEecCccchhhhhhhhcCCCCccccccceeEEEecceEeccc--cceeeecCcchhcccccCCCCccEEEEEeecc
Confidence            3789999999999999988886543 23344444333333333333  56889999994321       12334456779


Q ss_pred             cEEEEEEeCCCchhHHH
Q 036449           79 DVFILAFSLISKASYEN   95 (197)
Q Consensus        79 ~~~i~v~d~~~~~s~~~   95 (197)
                      +.+++|.|+..+-+-..
T Consensus       138 nli~~vld~~kp~~hk~  154 (358)
T KOG1487|consen  138 NLIFIVLDVLKPLSHKK  154 (358)
T ss_pred             cEEEEEeeccCcccHHH
Confidence            99999999987655433

>cd01856 YlqF YlqF

Probab=98.69  E-value=6.5e-08  Score=66.90  Aligned_cols=55  Identities=22%  Similarity=0.235  Sum_probs=36.8

Q ss_pred             ceeEEEEEcCCCCCHHHHHHHHhhCCCCC--CCCCceeeeeeEEEEECCeEEEEEEEeCCCc
Q 036449            5 RFIKCVTVGDGAVGKTCLLISYTSNTFPT--DYVPTVFDNFSANVVVNGSTVNLGLWDTAGQ   64 (197)
Q Consensus         5 ~~~~i~v~G~~~~GKstli~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~   64 (197)
                      ..++++++|.+|+|||||++++....+..  ....++..  ...+.++   ..+.+|||||.
T Consensus       114 ~~~~~~~~G~~~vGKstlin~l~~~~~~~~~~~~~~T~~--~~~~~~~---~~~~~iDtpG~  170 (171)
T cd01856         114 RGIRAMVVGIPNVGKSTLINRLRGKKVAKVGNKPGVTKG--IQWIKIS---PGIYLLDTPGI  170 (171)
T ss_pred             CCeEEEEECCCCCCHHHHHHHHhCCCceeecCCCCEEee--eEEEEec---CCEEEEECCCC
Confidence            44799999999999999999999876532  11222211  2223333   24679999994

Proteins of the YlqF family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. The YlqF subfamily is represented in a phylogenetically diverse array of bacteria (including gram-positive bacteria, proteobacteria, Synechocystis, Borrelia, and Thermotoga) and in all eukaryotes.

>cd01856 YlqF YlqF

Probab=98.68  E-value=3.7e-08  Score=68.13  Aligned_cols=99  Identities=22%  Similarity=0.134  Sum_probs=63.7

Q ss_pred             CCCcc-ccccccccCcCCCcEEEEEEeCCCchhHHHHHHHHHHHHhhhCCCCCEEEEeeCCcccCCcccccCCCCCCccc
Q 036449           61 TAGQE-DYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPIS  139 (197)
Q Consensus        61 ~~G~~-~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~  139 (197)
                      .||+. +........+.++|.+++|+|++++....+.  .+...+    .+.|+++|+||+|+.+...            
T Consensus         2 ~~~~~~~~~~~~~~~i~~aD~il~v~D~~~~~~~~~~--~i~~~~----~~k~~ilVlNK~Dl~~~~~------------   63 (171)
T cd01856           2 FPGHMAKALRQIKEKLKLVDLVIEVRDARIPLSSRNP--LLEKIL----GNKPRIIVLNKADLADPKK------------   63 (171)
T ss_pred             CchHHHHHHHHHHHHHhhCCEEEEEeeccCccCcCCh--hhHhHh----cCCCEEEEEehhhcCChHH------------
Confidence            35543 2223334567889999999999877543322  222222    3579999999999954211            


Q ss_pred             HHHHHHHHHHhCCCceEEeccCCCCCHHHHHHHHHHHHc
Q 036449          140 TAQGEELRKLIGAPAYIECSSKTQQNVKAVFDAAIRVVL  178 (197)
Q Consensus       140 ~~~~~~~~~~~~~~~~~~~sa~~~~~i~~l~~~i~~~~~  178 (197)
                      .....++.+..+. .++.+||+++.|++++.+.+.+.+.
T Consensus        64 ~~~~~~~~~~~~~-~vi~iSa~~~~gi~~L~~~l~~~l~  101 (171)
T cd01856          64 TKKWLKYFESKGE-KVLFVNAKSGKGVKKLLKAAKKLLK  101 (171)
T ss_pred             HHHHHHHHHhcCC-eEEEEECCCcccHHHHHHHHHHHHH
Confidence            1111122223333 6899999999999999999988763

Proteins of the YlqF family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. The YlqF subfamily is represented in a phylogenetically diverse array of bacteria (including gram-positive bacteria, proteobacteria, Synechocystis, Borrelia, and Thermotoga) and in all eukaryotes.

>KOG1954 consensus Endocytosis/signaling protein EHD1 [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]

Probab=98.68  E-value=1.5e-07  Score=70.75  Aligned_cols=115  Identities=25%  Similarity=0.257  Sum_probs=74.8

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhhCCCCCCC---CCceeeeeeEEEE------ECCe-------------------------
Q 036449            7 IKCVTVGDGAVGKTCLLISYTSNTFPTDY---VPTVFDNFSANVV------VNGS-------------------------   52 (197)
Q Consensus         7 ~~i~v~G~~~~GKstli~~~~~~~~~~~~---~~~~~~~~~~~~~------~~~~-------------------------   52 (197)
                      .=|+++|.=..||||+|+-++.+.++.-.   .||+ +.+...+.      ++|.                         
T Consensus        59 Pmill~GqyStGKTtfi~yLle~dypg~riGpEPTt-d~Fi~vM~G~~e~~ipGnal~vd~~~pF~gL~~FG~aflnRf~  137 (532)
T KOG1954|consen   59 PMILLVGQYSTGKTTFIRYLLEQDYPGLRIGPEPTT-DRFIAVMHGDEEGSIPGNALVVDAKKPFRGLNKFGNAFLNRFM  137 (532)
T ss_pred             ceEEEEeccccchhHHHHHHHhCCCCccccCCCCCc-ceeEEEEecCcccccCCceeeecCCCchhhhhhhHHHHHHHHH
Confidence            45999999999999999999988776422   2222 12211111      1111                         


Q ss_pred             --------EEEEEEEeCCCcc-----------ccccccccCcCCCcEEEEEEeCCCchhHHHHHHHHHHHHhhhCCCCCE
Q 036449           53 --------TVNLGLWDTAGQE-----------DYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPI  113 (197)
Q Consensus        53 --------~~~~~i~D~~G~~-----------~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~~~  113 (197)
                              .-.+.++||||.-           .|......+...+|.+|++||...-+--++. ...+..++.+  .-.+
T Consensus       138 csqmp~~vLe~vtiVdtPGILsgeKQrisR~ydF~~v~~WFaeR~D~IiLlfD~hKLDIsdEf-~~vi~aLkG~--Edki  214 (532)
T KOG1954|consen  138 CSQLPNQVLESVTIVDTPGILSGEKQRISRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEF-KRVIDALKGH--EDKI  214 (532)
T ss_pred             HhcCChhhhhheeeeccCcccccchhcccccCChHHHHHHHHHhccEEEEEechhhccccHHH-HHHHHHhhCC--ccee
Confidence                    1137799999932           2345556778889999999998654333333 4445555544  5677


Q ss_pred             EEEeeCCcccCC
Q 036449          114 ILVGTKLDLRDD  125 (197)
Q Consensus       114 ivv~nK~D~~~~  125 (197)
                      -||.||.|..+.
T Consensus       215 RVVLNKADqVdt  226 (532)
T KOG1954|consen  215 RVVLNKADQVDT  226 (532)
T ss_pred             EEEeccccccCH
Confidence            888999999654

>PF09547 Spore_IV_A: Stage IV sporulation protein A (spore_IV_A); InterPro: IPR014201 This entry is designated stage IV sporulation protein A

Probab=98.68  E-value=2.2e-06  Score=65.99  Aligned_cols=160  Identities=16%  Similarity=0.212  Sum_probs=98.9

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHhhCCC-----------------C----CCCCCceeeee----eEEEEE-CCeEEEEEEE
Q 036449            6 FIKCVTVGDGAVGKTCLLISYTSNTF-----------------P----TDYVPTVFDNF----SANVVV-NGSTVNLGLW   59 (197)
Q Consensus         6 ~~~i~v~G~~~~GKstli~~~~~~~~-----------------~----~~~~~~~~~~~----~~~~~~-~~~~~~~~i~   59 (197)
                      .+=|.|+|+..+|||||+++|...-.                 +    +...-|+...|    ...+.+ ++-.+++.++
T Consensus        17 dIYiGVVGPVRTGKSTFIKRFMel~VlPnI~d~~~reRa~DELPQS~aGktImTTEPKFiP~eAv~I~l~~~~~~kVRLi   96 (492)
T PF09547_consen   17 DIYIGVVGPVRTGKSTFIKRFMELLVLPNIEDEYERERARDELPQSGAGKTIMTTEPKFIPNEAVEITLDDGIKVKVRLI   96 (492)
T ss_pred             ceEEEeecCcccCchhHHHHHHHHhcCCCCCCHHHHHHhhhcCCcCCCCCceeccCCcccCCcceEEEecCCceEEEEEE
Confidence            35689999999999999999875211                 1    11111222222    123333 4667889999


Q ss_pred             eCCC--------c-----------ccccccc----------ccCcCC-Cc-EEEEEEeCC----CchhHHHHHHHHHHHH
Q 036449           60 DTAG--------Q-----------EDYNRLR----------PLSYRG-AD-VFILAFSLI----SKASYENVSKKWIPEL  104 (197)
Q Consensus        60 D~~G--------~-----------~~~~~~~----------~~~~~~-~~-~~i~v~d~~----~~~s~~~~~~~~~~~i  104 (197)
                      ||.|        +           +.|..-.          ...++. +. ++++.-|-+    .++.+..+..+.+..+
T Consensus        97 DCVGy~V~gA~Gy~e~~~pRmV~TPWfd~eIPF~eAAeiGT~KVI~dHSTIGiVVTTDGSi~dipRe~Y~eAEervI~EL  176 (492)
T PF09547_consen   97 DCVGYMVEGALGYEEEEGPRMVKTPWFDEEIPFEEAAEIGTRKVITDHSTIGIVVTTDGSITDIPRENYVEAEERVIEEL  176 (492)
T ss_pred             eecceeecCccccccCCCceeecCCCCCCCCCHHHHHhhcccceeccCCceeEEEecCCCccCCChHHHHHHHHHHHHHH
Confidence            9998        0           1111100          011111 11 444444433    2466777777888888


Q ss_pred             hhhCCCCCEEEEeeCCcccCCcccccCCCCCCcccHHHHHHHHHHhCCCceEEeccCCCCCHHHHHHHHHHHHcCCC
Q 036449          105 KHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQQNVKAVFDAAIRVVLQPP  181 (197)
Q Consensus       105 ~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~l~~~i~~~~~~~~  181 (197)
                      +..  +.|+++++|-.+-...            ...+.+.++..+|+. +.+++++.+ -.-+++...+.+.|++.+
T Consensus       177 k~i--gKPFvillNs~~P~s~------------et~~L~~eL~ekY~v-pVlpvnc~~-l~~~DI~~Il~~vLyEFP  237 (492)
T PF09547_consen  177 KEI--GKPFVILLNSTKPYSE------------ETQELAEELEEKYDV-PVLPVNCEQ-LREEDITRILEEVLYEFP  237 (492)
T ss_pred             HHh--CCCEEEEEeCCCCCCH------------HHHHHHHHHHHHhCC-cEEEeehHH-cCHHHHHHHHHHHHhcCC
Confidence            888  8999999997765432            345677889999998 899988874 345555555666666543

It acts in the mother cell compartment and plays a role in spore coat morphogenesis []. A comparative genome analysis of all sequenced genomes of Firmicutes shows that the proteins are strictly conserved among the sub-set of endospore-forming species.

>cd01849 YlqF_related_GTPase YlqF-related GTPases

Probab=98.66  E-value=1.8e-07  Score=63.67  Aligned_cols=83  Identities=18%  Similarity=0.102  Sum_probs=54.7

Q ss_pred             cEEEEEEeCCCchhHHHHHHHHH-HHHhhhCCCCCEEEEeeCCcccCCcccccCCCCCCcccHHHHHHHHHHhCCCceEE
Q 036449           79 DVFILAFSLISKASYENVSKKWI-PELKHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPISTAQGEELRKLIGAPAYIE  157 (197)
Q Consensus        79 ~~~i~v~d~~~~~s~~~~~~~~~-~~i~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  157 (197)
                      |.+++|+|+.++.+....  .+. ..+..  .+.|+++|+||+|+.+...          . ......+....+ ..++.
T Consensus         1 Dvvl~VvD~~~p~~~~~~--~i~~~~~~~--~~~p~IiVlNK~Dl~~~~~----------~-~~~~~~~~~~~~-~~ii~   64 (155)
T cd01849           1 DVILEVLDARDPLGTRSP--DIERVLIKE--KGKKLILVLNKADLVPKEV----------L-RKWLAYLRHSYP-TIPFK   64 (155)
T ss_pred             CEEEEEEeccCCccccCH--HHHHHHHhc--CCCCEEEEEechhcCCHHH----------H-HHHHHHHHhhCC-ceEEE
Confidence            689999999988655432  111 22222  3789999999999954211          0 111112322333 36899


Q ss_pred             eccCCCCCHHHHHHHHHHHH
Q 036449          158 CSSKTQQNVKAVFDAAIRVV  177 (197)
Q Consensus       158 ~sa~~~~~i~~l~~~i~~~~  177 (197)
                      +||+++.|++++.+.+.+..
T Consensus        65 vSa~~~~gi~~L~~~i~~~~   84 (155)
T cd01849          65 ISATNGQGIEKKESAFTKQT   84 (155)
T ss_pred             EeccCCcChhhHHHHHHHHh
Confidence            99999999999999987764

These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases.

>cd01859 MJ1464 MJ1464

Probab=98.66  E-value=1.1e-07  Score=64.74  Aligned_cols=56  Identities=21%  Similarity=0.164  Sum_probs=36.6

Q ss_pred             ceeEEEEEcCCCCCHHHHHHHHhhCCCCCCCCCceeeeeeEEEEECCeEEEEEEEeCCC
Q 036449            5 RFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWDTAG   63 (197)
Q Consensus         5 ~~~~i~v~G~~~~GKstli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G   63 (197)
                      ...+++++|.+++|||||++++.+... ....++.+..........+  ..+.+|||||
T Consensus       100 ~~~~~~~ig~~~~Gkssl~~~l~~~~~-~~~~~~~~~t~~~~~~~~~--~~~~~~DtpG  155 (156)
T cd01859         100 KEGKVGVVGYPNVGKSSIINALKGRHS-ASTSPSPGYTKGEQLVKIT--SKIYLLDTPG  155 (156)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhCCCc-cccCCCCCeeeeeEEEEcC--CCEEEEECcC
Confidence            457899999999999999999986543 2223333333222221112  2477999999

This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus.

>cd01857 HSR1_MMR1 HSR1/MMR1

Probab=98.64  E-value=1.3e-07  Score=63.26  Aligned_cols=77  Identities=17%  Similarity=0.108  Sum_probs=51.1

Q ss_pred             CcCCCcEEEEEEeCCCchhHHHHHHHHHHHHhhhCCCCCEEEEeeCCcccCCcccccCCCCCCcccHHHHHHHHHHhCCC
Q 036449           74 SYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPISTAQGEELRKLIGAP  153 (197)
Q Consensus        74 ~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  153 (197)
                      .+..+|++++|+|+.++.+..+.  .+...+....++.|+++|+||+|+.+...            ......+.+..+. 
T Consensus         8 ~i~~aD~vl~ViD~~~p~~~~~~--~l~~~l~~~~~~k~~iivlNK~DL~~~~~------------~~~~~~~~~~~~~-   72 (141)
T cd01857           8 VVERSDIVVQIVDARNPLLFRPP--DLERYVKEVDPRKKNILLLNKADLLTEEQ------------RKAWAEYFKKEGI-   72 (141)
T ss_pred             HHhhCCEEEEEEEccCCcccCCH--HHHHHHHhccCCCcEEEEEechhcCCHHH------------HHHHHHHHHhcCC-
Confidence            46789999999999988664421  33333333235789999999999954321            1233344445555 


Q ss_pred             ceEEeccCCCCC
Q 036449          154 AYIECSSKTQQN  165 (197)
Q Consensus       154 ~~~~~sa~~~~~  165 (197)
                      .++.+||.++.+
T Consensus        73 ~ii~iSa~~~~~   84 (141)
T cd01857          73 VVVFFSALKENA   84 (141)
T ss_pred             eEEEEEecCCCc
Confidence            789999997753

Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus.

>TIGR03596 GTPase_YlqF ribosome biogenesis GTP-binding protein YlqF

Probab=98.63  E-value=1.3e-07  Score=70.40  Aligned_cols=55  Identities=24%  Similarity=0.281  Sum_probs=37.2

Q ss_pred             ceeEEEEEcCCCCCHHHHHHHHhhCCCC--CCCCCceeeeeeEEEEECCeEEEEEEEeCCCc
Q 036449            5 RFIKCVTVGDGAVGKTCLLISYTSNTFP--TDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQ   64 (197)
Q Consensus         5 ~~~~i~v~G~~~~GKstli~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~   64 (197)
                      +.++++++|.+|+|||||+|++.+....  ...+.++..  ...+.++.   .+.++||||.
T Consensus       117 ~~~~~~~vG~~nvGKSslin~l~~~~~~~~~~~~g~T~~--~~~~~~~~---~~~l~DtPG~  173 (276)
T TIGR03596       117 RPIRAMIVGIPNVGKSTLINRLAGKKVAKVGNRPGVTKG--QQWIKLSD---GLELLDTPGI  173 (276)
T ss_pred             CCeEEEEECCCCCCHHHHHHHHhCCCccccCCCCCeecc--eEEEEeCC---CEEEEECCCc
Confidence            4589999999999999999999976532  222222221  22333332   3579999997

Members of this protein family are GTP-binding proteins involved in ribosome biogenesis, including the essential YlqF protein of Bacillus subtilis, which is an essential protein. They are related to Era, EngA, and other GTPases of ribosome biogenesis, but are circularly permuted. This family is not universal, and is not present in Escherichia coli, and so is not as well studied as some other GTPases. This model is built for bacterial members.

>PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis

Probab=98.61  E-value=4.1e-08  Score=66.42  Aligned_cols=59  Identities=15%  Similarity=0.159  Sum_probs=32.8

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhhCCCCCC-C------CCceeeeeeEEEEECCeEEEEEEEeCCCccccc
Q 036449            7 IKCVTVGDGAVGKTCLLISYTSNTFPTD-Y------VPTVFDNFSANVVVNGSTVNLGLWDTAGQEDYN   68 (197)
Q Consensus         7 ~~i~v~G~~~~GKstli~~~~~~~~~~~-~------~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~   68 (197)
                      =.++++|++|||||||+|.+........ .      ...........+..++..   .++||||...+.
T Consensus        36 k~~vl~G~SGvGKSSLiN~L~~~~~~~t~~is~~~~rGkHTTt~~~l~~l~~g~---~iIDTPGf~~~~  101 (161)
T PF03193_consen   36 KTSVLLGQSGVGKSSLINALLPEAKQKTGEISEKTGRGKHTTTHRELFPLPDGG---YIIDTPGFRSFG  101 (161)
T ss_dssp             SEEEEECSTTSSHHHHHHHHHTSS----S--------------SEEEEEETTSE---EEECSHHHHT--
T ss_pred             CEEEEECCCCCCHHHHHHHHHhhcchhhhhhhcccCCCcccCCCeeEEecCCCc---EEEECCCCCccc
Confidence            3589999999999999999997632111 0      011111222233343322   389999976543

RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B.

>COG5192 BMS1 GTP-binding protein required for 40S ribosome biogenesis [Translation, ribosomal structure and biogenesis]

Probab=98.60  E-value=1.7e-07  Score=74.22  Aligned_cols=111  Identities=21%  Similarity=0.217  Sum_probs=75.5

Q ss_pred             CceeEEEEEcCCCCCHHHHHHHHhhCCCCCCCCCceeeeeeEEEEECCeEEEEEEEeCCCccccccccccCcCCCcEEEE
Q 036449            4 SRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFIL   83 (197)
Q Consensus         4 ~~~~~i~v~G~~~~GKstli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~   83 (197)
                      ++.+-++|+|++|+||||||+++...-..    .|..+.......+.++..++++..+|..  ..++. ...+-+|.+++
T Consensus        67 PPPfIvavvGPpGtGKsTLirSlVrr~tk----~ti~~i~GPiTvvsgK~RRiTflEcp~D--l~~mi-DvaKIaDLVlL  139 (1077)
T COG5192          67 PPPFIVAVVGPPGTGKSTLIRSLVRRFTK----QTIDEIRGPITVVSGKTRRITFLECPSD--LHQMI-DVAKIADLVLL  139 (1077)
T ss_pred             CCCeEEEeecCCCCChhHHHHHHHHHHHH----hhhhccCCceEEeecceeEEEEEeChHH--HHHHH-hHHHhhheeEE
Confidence            45677889999999999999887754211    1112222334446778888999999932  33322 23455899999


Q ss_pred             EEeCCCchhHHHHHHHHHHHHhhhCCCCC-EEEEeeCCcccCC
Q 036449           84 AFSLISKASYENVSKKWIPELKHYAPGVP-IILVGTKLDLRDD  125 (197)
Q Consensus        84 v~d~~~~~s~~~~~~~~~~~i~~~~~~~~-~ivv~nK~D~~~~  125 (197)
                      .+|.+-+-..+..  .++..+...  +.| ++-|+++.|+...
T Consensus       140 lIdgnfGfEMETm--EFLnil~~H--GmPrvlgV~ThlDlfk~  178 (1077)
T COG5192         140 LIDGNFGFEMETM--EFLNILISH--GMPRVLGVVTHLDLFKN  178 (1077)
T ss_pred             EeccccCceehHH--HHHHHHhhc--CCCceEEEEeecccccC
Confidence            9999877555444  667777776  555 5678899999654

>PRK09563 rbgA GTPase YlqF; Reviewed

Probab=98.58  E-value=2.6e-07  Score=69.19  Aligned_cols=55  Identities=22%  Similarity=0.281  Sum_probs=37.2

Q ss_pred             ceeEEEEEcCCCCCHHHHHHHHhhCCCC--CCCCCceeeeeeEEEEECCeEEEEEEEeCCCc
Q 036449            5 RFIKCVTVGDGAVGKTCLLISYTSNTFP--TDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQ   64 (197)
Q Consensus         5 ~~~~i~v~G~~~~GKstli~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~   64 (197)
                      ..++|+++|.++||||||+|++.+....  ...+.++..  ...+.+++   .+.++||||.
T Consensus       120 ~~~~~~~~G~pnvGKSsliN~l~~~~~~~~~~~~g~T~~--~~~~~~~~---~~~l~DtPGi  176 (287)
T PRK09563        120 RAIRAMIIGIPNVGKSTLINRLAGKKIAKTGNRPGVTKA--QQWIKLGK---GLELLDTPGI  176 (287)
T ss_pred             CceEEEEECCCCCCHHHHHHHHhcCCccccCCCCCeEEE--EEEEEeCC---cEEEEECCCc
Confidence            4589999999999999999999986542  222222221  12233332   3669999997

>TIGR03596 GTPase_YlqF ribosome biogenesis GTP-binding protein YlqF

Probab=98.55  E-value=1.9e-07  Score=69.49  Aligned_cols=100  Identities=21%  Similarity=0.117  Sum_probs=65.1

Q ss_pred             CCCcc-ccccccccCcCCCcEEEEEEeCCCchhHHHHHHHHHHHHhhhCCCCCEEEEeeCCcccCCcccccCCCCCCccc
Q 036449           61 TAGQE-DYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPIS  139 (197)
Q Consensus        61 ~~G~~-~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~  139 (197)
                      .|||. +........+..+|++++|+|+.++.+....  .+...+    .+.|+++|.||+|+.+...            
T Consensus         4 fpgHm~k~~~~~~~~l~~aDvVl~V~Dar~p~~~~~~--~i~~~l----~~kp~IiVlNK~DL~~~~~------------   65 (276)
T TIGR03596         4 FPGHMAKARREIKEKLKLVDVVIEVLDARIPLSSRNP--MIDEIR----GNKPRLIVLNKADLADPAV------------   65 (276)
T ss_pred             ChHHHHHHHHHHHHHHhhCCEEEEEEeCCCCCCCCCh--hHHHHH----CCCCEEEEEEccccCCHHH------------
Confidence            45653 2233445567889999999999877554332  222222    2679999999999954211            


Q ss_pred             HHHHHHHHHHhCCCceEEeccCCCCCHHHHHHHHHHHHcC
Q 036449          140 TAQGEELRKLIGAPAYIECSSKTQQNVKAVFDAAIRVVLQ  179 (197)
Q Consensus       140 ~~~~~~~~~~~~~~~~~~~sa~~~~~i~~l~~~i~~~~~~  179 (197)
                      .....++.+..+. +++.+||+++.|++++.+.+.+.+..
T Consensus        66 ~~~~~~~~~~~~~-~vi~iSa~~~~gi~~L~~~i~~~~~~  104 (276)
T TIGR03596        66 TKQWLKYFEEKGI-KALAINAKKGKGVKKIIKAAKKLLKE  104 (276)
T ss_pred             HHHHHHHHHHcCC-eEEEEECCCcccHHHHHHHHHHHHHH
Confidence            1111112223344 68999999999999999999887754

Members of this protein family are GTP-binding proteins involved in ribosome biogenesis, including the essential YlqF protein of Bacillus subtilis, which is an essential protein. They are related to Era, EngA, and other GTPases of ribosome biogenesis, but are circularly permuted. This family is not universal, and is not present in Escherichia coli, and so is not as well studied as some other GTPases. This model is built for bacterial members.

>cd01855 YqeH YqeH

Probab=98.53  E-value=1.4e-07  Score=66.32  Aligned_cols=25  Identities=24%  Similarity=0.227  Sum_probs=22.1

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHhhCC
Q 036449            6 FIKCVTVGDGAVGKTCLLISYTSNT   30 (197)
Q Consensus         6 ~~~i~v~G~~~~GKstli~~~~~~~   30 (197)
                      ..+++++|.+|+|||||+|++....
T Consensus       127 ~~~~~~~G~~nvGKStliN~l~~~~  151 (190)
T cd01855         127 GGDVYVVGATNVGKSTLINALLKKD  151 (190)
T ss_pred             CCcEEEEcCCCCCHHHHHHHHHHhc
Confidence            3589999999999999999999753

YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases.

>cd01849 YlqF_related_GTPase YlqF-related GTPases

Probab=98.51  E-value=5.1e-07  Score=61.42  Aligned_cols=54  Identities=20%  Similarity=0.227  Sum_probs=36.0

Q ss_pred             ceeEEEEEcCCCCCHHHHHHHHhhCCC--CCCCCCceeeeeeEEEEECCeEEEEEEEeCCC
Q 036449            5 RFIKCVTVGDGAVGKTCLLISYTSNTF--PTDYVPTVFDNFSANVVVNGSTVNLGLWDTAG   63 (197)
Q Consensus         5 ~~~~i~v~G~~~~GKstli~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G   63 (197)
                      ...+|+++|.+|+|||||+|.+.....  ......++.....  ...+   ..+.++||||
T Consensus        99 ~~~~~~~~G~~~~GKstlin~l~~~~~~~~~~~~~~t~~~~~--~~~~---~~~~liDtPG  154 (155)
T cd01849          99 KSITVGVIGYPNVGKSSVINALLNKLKLKVGNVPGTTTSQQE--VKLD---NKIKLLDTPG  154 (155)
T ss_pred             cCcEEEEEccCCCCHHHHHHHHHccccccccCCCCcccceEE--EEec---CCEEEEECCC
Confidence            457899999999999999999997643  1222333322221  2222   2467999999

These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases.

>PRK12288 GTPase RsgA; Reviewed

Probab=98.50  E-value=2e-07  Score=71.34  Aligned_cols=22  Identities=27%  Similarity=0.505  Sum_probs=20.1

Q ss_pred             EEEEcCCCCCHHHHHHHHhhCC
Q 036449            9 CVTVGDGAVGKTCLLISYTSNT   30 (197)
Q Consensus         9 i~v~G~~~~GKstli~~~~~~~   30 (197)
                      ++++|.+|||||||+|+|....
T Consensus       208 ~~~vG~sgVGKSTLiN~Ll~~~  229 (347)
T PRK12288        208 SIFVGQSGVGKSSLINALLPEA  229 (347)
T ss_pred             EEEECCCCCCHHHHHHHhcccc
Confidence            7899999999999999999754

>PRK13796 GTPase YqeH; Provisional

Probab=98.50  E-value=6.2e-07  Score=69.28  Aligned_cols=94  Identities=18%  Similarity=0.324  Sum_probs=61.8

Q ss_pred             ccccccccCcCCCcEEEEEEeCCCchhHHHHHHHHHHHHhhhCCCCCEEEEeeCCcccCCcccccCCCCCCcccHHH---
Q 036449           66 DYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPISTAQ---  142 (197)
Q Consensus        66 ~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~---  142 (197)
                      .|.......-...+.+++|+|+.|..      ..|...+.....+.|+++|+||+|+.+..           ...+.   
T Consensus        58 ~~~~~l~~i~~~~~lIv~VVD~~D~~------~s~~~~L~~~~~~kpviLViNK~DLl~~~-----------~~~~~i~~  120 (365)
T PRK13796         58 DFLKLLNGIGDSDALVVNVVDIFDFN------GSWIPGLHRFVGNNPVLLVGNKADLLPKS-----------VKKNKVKN  120 (365)
T ss_pred             HHHHHHHhhcccCcEEEEEEECccCC------CchhHHHHHHhCCCCEEEEEEchhhCCCc-----------cCHHHHHH
Confidence            34443333333344999999998753      33445555444578999999999996532           11222   


Q ss_pred             -HHHHHHHhCCC--ceEEeccCCCCCHHHHHHHHHHH
Q 036449          143 -GEELRKLIGAP--AYIECSSKTQQNVKAVFDAAIRV  176 (197)
Q Consensus       143 -~~~~~~~~~~~--~~~~~sa~~~~~i~~l~~~i~~~  176 (197)
                       ...+++..+..  .++.+||+++.|++++++.|.+.
T Consensus       121 ~l~~~~k~~g~~~~~v~~vSAk~g~gI~eL~~~I~~~  157 (365)
T PRK13796        121 WLRQEAKELGLRPVDVVLISAQKGHGIDELLEAIEKY  157 (365)
T ss_pred             HHHHHHHhcCCCcCcEEEEECCCCCCHHHHHHHHHHh
Confidence             23334555542  57899999999999999999765

>KOG0448 consensus Mitofusin 1 GTPase, involved in mitochondrila biogenesis [Posttranslational modification, protein turnover, chaperones]

Probab=98.49  E-value=2.3e-06  Score=69.12  Aligned_cols=118  Identities=15%  Similarity=0.173  Sum_probs=73.0

Q ss_pred             CceeEEEEEcCCCCCHHHHHHHHhhCCCCCC-CCCceeee----------------------------------------
Q 036449            4 SRFIKCVTVGDGAVGKTCLLISYTSNTFPTD-YVPTVFDN----------------------------------------   42 (197)
Q Consensus         4 ~~~~~i~v~G~~~~GKstli~~~~~~~~~~~-~~~~~~~~----------------------------------------   42 (197)
                      ....||++.|...+||||++|+++..+.-+. ..+++.-.                                        
T Consensus       107 r~~mKV~ifGrts~GKSt~iNAmL~~klLP~g~gh~TncF~~VegadG~e~vl~~~~s~ek~d~~ti~~~~haL~~~~~~  186 (749)
T KOG0448|consen  107 RRHMKVAIFGRTSAGKSTVINAMLHKKLLPSGIGHTTNCFLEVEGADGAEAVLATEGSEEKIDMKTINQLAHALKPDKDL  186 (749)
T ss_pred             hcccEEEEeCCCCCcHHHHHHHHHHHhhCcccccccceeeeeecccCCcceeeccCCCcccccHHHHhHHHHhcCccccc
Confidence            4568999999999999999999987654321 11111000                                        


Q ss_pred             ---eeEEEEECCe-----EEEEEEEeCCCcc---ccccccccCcCCCcEEEEEEeCCCchhHHHHHHHHHHHHhhhCCCC
Q 036449           43 ---FSANVVVNGS-----TVNLGLWDTAGQE---DYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGV  111 (197)
Q Consensus        43 ---~~~~~~~~~~-----~~~~~i~D~~G~~---~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~  111 (197)
                         ....+.++..     .-.+.+.|.||.+   ...+-...+...+|++|+|.++.+..+..+.  .++......  +.
T Consensus       187 ~~~sLlrV~~p~~~csLLrnDivliDsPGld~~se~tswid~~cldaDVfVlV~NaEntlt~sek--~Ff~~vs~~--Kp  262 (749)
T KOG0448|consen  187 GAGSLLRVFWPDDKCSLLRNDIVLIDSPGLDVDSELTSWIDSFCLDADVFVLVVNAENTLTLSEK--QFFHKVSEE--KP  262 (749)
T ss_pred             CcceEEEEEecCccchhhhccceeccCCCCCCchhhhHHHHHHhhcCCeEEEEecCccHhHHHHH--HHHHHhhcc--CC
Confidence               0000111111     0025578999954   3344445577889999999998877666554  444444444  45


Q ss_pred             CEEEEeeCCcccCC
Q 036449          112 PIILVGTKLDLRDD  125 (197)
Q Consensus       112 ~~ivv~nK~D~~~~  125 (197)
                      .+.|+.||.|....
T Consensus       263 niFIlnnkwDasas  276 (749)
T KOG0448|consen  263 NIFILNNKWDASAS  276 (749)
T ss_pred             cEEEEechhhhhcc
Confidence            56677788898764

>KOG0085 consensus G protein subunit Galphaq/Galphay, small G protein superfamily [Signal transduction mechanisms]

Probab=98.49  E-value=1e-07  Score=67.31  Aligned_cols=128  Identities=16%  Similarity=0.182  Sum_probs=78.3

Q ss_pred             eEEEEEEEeCCCccccccccccCcCCCcEEEEEEeCCCch----------hHHHHHHHHHHHHhhhC-CCCCEEEEeeCC
Q 036449           52 STVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKA----------SYENVSKKWIPELKHYA-PGVPIILVGTKL  120 (197)
Q Consensus        52 ~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~----------s~~~~~~~~~~~i~~~~-~~~~~ivv~nK~  120 (197)
                      ..+.+.+.|.+|+...+..|.+.+.++..+++.+.++..+          ..++....+...+.-.. .+.++|++.||.
T Consensus       197 ~~iifrmvDvGGqrserrKWIHCFEnvtsi~fLvaLSEYDQvL~E~dnENRMeESkALFrTIi~yPWF~nssVIlFLNKk  276 (359)
T KOG0085|consen  197 QKIIFRMVDVGGQRSERRKWIHCFENVTSIIFLVALSEYDQVLVESDNENRMEESKALFRTIITYPWFQNSSVILFLNKK  276 (359)
T ss_pred             hhheeeeeecCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHccchhhHHHHHHHHHHHhccccccCCceEEEechh
Confidence            3466778899998888888888888888777776665321          12222122223332222 589999999999


Q ss_pred             cccCCcccc-------cCCCCCCcccHHHHHHHHHHh----CCC-----ceEEeccCCCCCHHHHHHHHHHHHcCC
Q 036449          121 DLRDDKQFF-------IDHPGAVPISTAQGEELRKLI----GAP-----AYIECSSKTQQNVKAVFDAAIRVVLQP  180 (197)
Q Consensus       121 D~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~----~~~-----~~~~~sa~~~~~i~~l~~~i~~~~~~~  180 (197)
                      |+.++.-..       ++..++ ..+.+.+++|..++    +..     .-..+.|.+.+|+.-+|..+...+.+.
T Consensus       277 DlLEekI~ySHl~~YFPe~~GP-~qDa~AAreFILkm~~d~nPd~dKii~SHfTcATDT~NIRfVFaaVkDtiLq~  351 (359)
T KOG0085|consen  277 DLLEEKILYSHLADYFPEFDGP-KQDAQAAREFILKMYVDMNPDSDKIIYSHFTCATDTENIRFVFAAVKDTILQL  351 (359)
T ss_pred             hhhhhhhhHHHHHHhCcccCCC-cccHHHHHHHHHHHHHhhCCCccceeeeeeeecccchhHHHHHHHHHHHHHHh
Confidence            998754221       111111 13344455554433    110     124477888899999999988776654

>TIGR00092 GTP-binding protein YchF

Probab=98.47  E-value=6e-07  Score=68.64  Aligned_cols=82  Identities=17%  Similarity=0.060  Sum_probs=55.0

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhhCCC-C-CCCCCceeeeeeEEEEECCe---------------EEEEEEEeCCCcccc--
Q 036449            7 IKCVTVGDGAVGKTCLLISYTSNTF-P-TDYVPTVFDNFSANVVVNGS---------------TVNLGLWDTAGQEDY--   67 (197)
Q Consensus         7 ~~i~v~G~~~~GKstli~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~---------------~~~~~i~D~~G~~~~--   67 (197)
                      +++.++|.+++|||||++.+..... . .+|+.++.......+.+.+.               ...+.+.|.||.-.-  
T Consensus         3 lk~GivGlPn~GKSTlfnaLT~~~~~~~a~ypftTi~p~~g~v~v~d~r~d~L~~~~~~~~~~~a~i~~~DiaGlv~gAs   82 (368)
T TIGR00092         3 LSGGIVGLPNVGKSTLFAATTNLLGNEAANPPFTTIEPNAGVVNPSDPRLDLLAIYIKPEKVPPTTTEFVDIAGLVGGAS   82 (368)
T ss_pred             ceEEEECCCCCChHHHHHHHhCCCccccCCCCCCCCCCceeEEEechhHHHHHHHHhCCcCcCCceEEEEeccccccchh
Confidence            7899999999999999999998765 2 44555543333333333321               135789999995321  


Q ss_pred             -----ccccccCcCCCcEEEEEEeCC
Q 036449           68 -----NRLRPLSYRGADVFILAFSLI   88 (197)
Q Consensus        68 -----~~~~~~~~~~~~~~i~v~d~~   88 (197)
                           .......++++|+++.|++..
T Consensus        83 ~g~Glgn~fL~~ir~~d~l~hVvr~f  108 (368)
T TIGR00092        83 KGEGLGNQFLANIREVDIIQHVVRCF  108 (368)
T ss_pred             cccCcchHHHHHHHhCCEEEEEEeCC
Confidence                 112223467899999999985

This predicted GTP-binding protein is found in a single copy in every complete bacterial genome, and is found in Eukaryotes. A more distantly related protein, separated from this model, is found in the archaea. It is known to bind GTP and double-stranded nucleic acid. It is suggested to belong to a nucleoprotein complex and act as a translation factor.

>COG1161 Predicted GTPases [General function prediction only]

Probab=98.44  E-value=6.1e-07  Score=68.12  Aligned_cols=56  Identities=21%  Similarity=0.188  Sum_probs=36.9

Q ss_pred             ceeEEEEEcCCCCCHHHHHHHHhhCCCCCCCCCceeeee-eEEEEECCeEEEEEEEeCCCc
Q 036449            5 RFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNF-SANVVVNGSTVNLGLWDTAGQ   64 (197)
Q Consensus         5 ~~~~i~v~G~~~~GKstli~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~D~~G~   64 (197)
                      +.++++++|-++||||||||++.+...... .+..+.+. ...+.++..   +.++||||.
T Consensus       131 ~~~~v~vvG~PNVGKSslIN~L~~k~~~~~-s~~PG~Tk~~q~i~~~~~---i~LlDtPGi  187 (322)
T COG1161         131 RKIRVGVVGYPNVGKSTLINRLLGKKVAKT-SNRPGTTKGIQWIKLDDG---IYLLDTPGI  187 (322)
T ss_pred             cceEEEEEcCCCCcHHHHHHHHhcccceee-CCCCceecceEEEEcCCC---eEEecCCCc
Confidence            458899999999999999999998765221 11112222 222333332   669999995

>PRK09563 rbgA GTPase YlqF; Reviewed

Probab=98.42  E-value=4.1e-07  Score=68.13  Aligned_cols=101  Identities=23%  Similarity=0.143  Sum_probs=65.6

Q ss_pred             eCCCccc-cccccccCcCCCcEEEEEEeCCCchhHHHHHHHHHHHHhhhCCCCCEEEEeeCCcccCCcccccCCCCCCcc
Q 036449           60 DTAGQED-YNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPI  138 (197)
Q Consensus        60 D~~G~~~-~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~  138 (197)
                      -.|||.. -.......+..+|++++|+|+.++.+....  .+...+    .+.|+++|.||+|+.+...           
T Consensus         6 wfpgHm~k~~~~l~~~l~~aDvIL~VvDar~p~~~~~~--~l~~~~----~~kp~iiVlNK~DL~~~~~-----------   68 (287)
T PRK09563          6 WFPGHMAKARREIKENLKLVDVVIEVLDARIPLSSENP--MIDKII----GNKPRLLILNKSDLADPEV-----------   68 (287)
T ss_pred             CcHHHHHHHHHHHHHHhhhCCEEEEEEECCCCCCCCCh--hHHHHh----CCCCEEEEEEchhcCCHHH-----------
Confidence            3566532 223344567889999999999877554321  222222    2689999999999953210           


Q ss_pred             cHHHHHHHHHHhCCCceEEeccCCCCCHHHHHHHHHHHHcC
Q 036449          139 STAQGEELRKLIGAPAYIECSSKTQQNVKAVFDAAIRVVLQ  179 (197)
Q Consensus       139 ~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~l~~~i~~~~~~  179 (197)
                       .....++.+..+. +++.+||+++.|++++.+.+.+.+..
T Consensus        69 -~~~~~~~~~~~~~-~vi~vSa~~~~gi~~L~~~l~~~l~~  107 (287)
T PRK09563         69 -TKKWIEYFEEQGI-KALAINAKKGQGVKKILKAAKKLLKE  107 (287)
T ss_pred             -HHHHHHHHHHcCC-eEEEEECCCcccHHHHHHHHHHHHHH
Confidence             1111222233344 68999999999999999998887644

>cd01851 GBP Guanylate-binding protein (GBP), N-terminal domain

Probab=98.42  E-value=1.8e-06  Score=62.32  Aligned_cols=88  Identities=19%  Similarity=0.123  Sum_probs=53.4

Q ss_pred             CceeEEEEEcCCCCCHHHHHHHHhhC--CCCCC--CCCceeeeeeEEEEEC-CeEEEEEEEeCCCccccccc------cc
Q 036449            4 SRFIKCVTVGDGAVGKTCLLISYTSN--TFPTD--YVPTVFDNFSANVVVN-GSTVNLGLWDTAGQEDYNRL------RP   72 (197)
Q Consensus         4 ~~~~~i~v~G~~~~GKstli~~~~~~--~~~~~--~~~~~~~~~~~~~~~~-~~~~~~~i~D~~G~~~~~~~------~~   72 (197)
                      .+..-|.|+|++++|||+|+|.+++.  .|...  ..+++........... +....+.++||+|.......      ..
T Consensus         5 ~~v~vvsv~G~~~sGKS~llN~l~~~~~~f~~~~~~~~~T~gi~~~~~~~~~~~~~~v~~lDteG~~~~~~~~~~~~~~~   84 (224)
T cd01851           5 FPVAVVSVFGPQSSGKSFLLNHLFGTLSGFDVMDTSQQTTKGIWMWSVPFKLGKEHAVLLLDTEGTDGRERGEFEDDARL   84 (224)
T ss_pred             CCEEEEEEECCCCCCHHHHHHHHhCCCCCeEecCCCCCCccceEEEeccccCCCcceEEEEecCCcCccccCchhhhhHH
Confidence            45678999999999999999999988  55422  2233322222222221 23467889999996543221      11


Q ss_pred             cCcCC--CcEEEEEEeCCCch
Q 036449           73 LSYRG--ADVFILAFSLISKA   91 (197)
Q Consensus        73 ~~~~~--~~~~i~v~d~~~~~   91 (197)
                      ..+..  ++.+|+..+.....
T Consensus        85 ~~l~~llss~~i~n~~~~~~~  105 (224)
T cd01851          85 FALATLLSSVLIYNSWETILG  105 (224)
T ss_pred             HHHHHHHhCEEEEeccCcccH
Confidence            12223  67777777765443

Guanylate-binding proteins (GBPs) define a group of proteins that are synthesized after activation of the cell by interferons. The biochemical properties of GBPs are clearly different from those of Ras-like and heterotrimeric GTP-binding proteins. They bind guanine nucleotides with low affinity (micromolar range), are stable in their absence and have a high turnover GTPase. In addition to binding GDP/GTP, they have the unique ability to bind GMP with equal affinity and hydrolyze GTP not only to GDP, but also to GMP. Furthermore, two unique regions around the base and the phosphate-binding areas, the guanine and the phosphate caps, respectively, give the nucleotide-binding site a unique appearance not found in the canonical GTP-binding proteins. The phosphate cap, which constitutes the region analogous to switch I, completely shields the phosphate-binding site from solvent such that a potential GTPase-activating protein

>TIGR03348 VI_IcmF type VI secretion protein IcmF

Probab=98.41  E-value=6.6e-07  Score=78.61  Aligned_cols=112  Identities=23%  Similarity=0.225  Sum_probs=62.7

Q ss_pred             EEEEcCCCCCHHHHHHHHhhCCCCCC----CCC--ceeeeeeEEEEECCeEEEEEEEeCCCcc--------ccccccccC
Q 036449            9 CVTVGDGAVGKTCLLISYTSNTFPTD----YVP--TVFDNFSANVVVNGSTVNLGLWDTAGQE--------DYNRLRPLS   74 (197)
Q Consensus         9 i~v~G~~~~GKstli~~~~~~~~~~~----~~~--~~~~~~~~~~~~~~~~~~~~i~D~~G~~--------~~~~~~~~~   74 (197)
                      .+|+|++|+||||++..- +..++-.    ...  ..+........+.++-+   ++|++|..        .....|..+
T Consensus       114 YlviG~~gsGKtt~l~~s-gl~~pl~~~~~~~~~~~~~~t~~c~wwf~~~av---liDtaG~y~~~~~~~~~~~~~W~~f  189 (1169)
T TIGR03348       114 YLVIGPPGSGKTTLLQNS-GLKFPLAERLGAAALRGVGGTRNCDWWFTDEAV---LIDTAGRYTTQDSDPEEDAAAWLGF  189 (1169)
T ss_pred             EEEECCCCCchhHHHHhC-CCCCcCchhhccccccCCCCCcccceEecCCEE---EEcCCCccccCCCcccccHHHHHHH
Confidence            689999999999999765 2222211    011  11111111222233223   89999921        111223333


Q ss_pred             c---------CCCcEEEEEEeCCCch-----hHHH---HHHHHHHHHhhhC-CCCCEEEEeeCCcccC
Q 036449           75 Y---------RGADVFILAFSLISKA-----SYEN---VSKKWIPELKHYA-PGVPIILVGTKLDLRD  124 (197)
Q Consensus        75 ~---------~~~~~~i~v~d~~~~~-----s~~~---~~~~~~~~i~~~~-~~~~~ivv~nK~D~~~  124 (197)
                      +         ...+++|+++|+.+-.     ....   ..+..+..+.... -..||++++||+|+..
T Consensus       190 L~~L~k~R~r~plnGvil~vs~~~Ll~~~~~~~~~~a~~lR~rl~el~~~lg~~~PVYvv~Tk~Dll~  257 (1169)
T TIGR03348       190 LGLLRKHRRRQPLNGVVVTVSLADLLTADPAERKAHARAIRQRLQELREQLGARFPVYLVLTKADLLA  257 (1169)
T ss_pred             HHHHHHhCCCCCCCeEEEEEEHHHHhCCCHHHHHHHHHHHHHHHHHHHHHhCCCCCEEEEEecchhhc
Confidence            2         2478999999996532     1111   1133344444444 5899999999999874

Members of this protein family are IcmF homologs and tend to be associated with type VI secretion systems.

>KOG0467 consensus Translation elongation factor 2/ribosome biogenesis protein RIA1 and related proteins [Translation, ribosomal structure and biogenesis]

Probab=98.39  E-value=1.2e-06  Score=71.34  Aligned_cols=117  Identities=16%  Similarity=0.144  Sum_probs=77.3

Q ss_pred             CCCceeEEEEEcCCCCCHHHHHHHHhhCCC--CCCCCCce------eeeeeEE-------EEECCeEEEEEEEeCCCccc
Q 036449            2 SASRFIKCVTVGDGAVGKTCLLISYTSNTF--PTDYVPTV------FDNFSAN-------VVVNGSTVNLGLWDTAGQED   66 (197)
Q Consensus         2 ~~~~~~~i~v~G~~~~GKstli~~~~~~~~--~~~~~~~~------~~~~~~~-------~~~~~~~~~~~i~D~~G~~~   66 (197)
                      ..+..=+|+++-+...|||||...++....  +.......      .+.....       +...-+.+.++++|+|||-+
T Consensus         5 ~~~~irn~~~vahvdhgktsladsl~asngvis~rlagkirfld~redeq~rgitmkss~is~~~~~~~~nlidspghvd   84 (887)
T KOG0467|consen    5 GSEGIRNICLVAHVDHGKTSLADSLVASNGVISSRLAGKIRFLDTREDEQTRGITMKSSAISLLHKDYLINLIDSPGHVD   84 (887)
T ss_pred             CCCceeEEEEEEEecCCccchHHHHHhhccEechhhccceeeccccchhhhhceeeeccccccccCceEEEEecCCCccc
Confidence            345667899999999999999988874322  11111111      1111111       11223567899999999999


Q ss_pred             cccccccCcCCCcEEEEEEeCCCchhHHHHHHHHHHHHhhhCCCCCEEEEeeCCcc
Q 036449           67 YNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDL  122 (197)
Q Consensus        67 ~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~~~ivv~nK~D~  122 (197)
                      |.+.......-+|++++.+|+..+-.-+..  ..+.....  .+...++|.||+|.
T Consensus        85 f~sevssas~l~d~alvlvdvvegv~~qt~--~vlrq~~~--~~~~~~lvinkidr  136 (887)
T KOG0467|consen   85 FSSEVSSASRLSDGALVLVDVVEGVCSQTY--AVLRQAWI--EGLKPILVINKIDR  136 (887)
T ss_pred             hhhhhhhhhhhcCCcEEEEeeccccchhHH--HHHHHHHH--ccCceEEEEehhhh
Confidence            999988888899999999999876444332  11111111  25678999999993

>PRK01889 GTPase RsgA; Reviewed

Probab=98.36  E-value=3.1e-06  Score=65.19  Aligned_cols=84  Identities=15%  Similarity=0.173  Sum_probs=59.7

Q ss_pred             CcCCCcEEEEEEeCCCchhHHHHHHHHHHHHhhhCCCCCEEEEeeCCcccCCcccccCCCCCCcccHHHHHHHHH-HhCC
Q 036449           74 SYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPISTAQGEELRK-LIGA  152 (197)
Q Consensus        74 ~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~  152 (197)
                      ...++|.+++|+++..+-....+ +.++......  +++.++|+||+|+.+..             .+....+.. ..+.
T Consensus       109 iaANvD~vliV~s~~p~~~~~~l-dr~L~~a~~~--~i~piIVLNK~DL~~~~-------------~~~~~~~~~~~~g~  172 (356)
T PRK01889        109 IAANVDTVFIVCSLNHDFNLRRI-ERYLALAWES--GAEPVIVLTKADLCEDA-------------EEKIAEVEALAPGV  172 (356)
T ss_pred             EEEeCCEEEEEEecCCCCChhHH-HHHHHHHHHc--CCCEEEEEEChhcCCCH-------------HHHHHHHHHhCCCC
Confidence            35789999999999754444444 6677666666  78889999999996531             111122222 2344


Q ss_pred             CceEEeccCCCCCHHHHHHHHH
Q 036449          153 PAYIECSSKTQQNVKAVFDAAI  174 (197)
Q Consensus       153 ~~~~~~sa~~~~~i~~l~~~i~  174 (197)
                       +++.+|++++.|++++..++.
T Consensus       173 -~Vi~vSa~~g~gl~~L~~~L~  193 (356)
T PRK01889        173 -PVLAVSALDGEGLDVLAAWLS  193 (356)
T ss_pred             -cEEEEECCCCccHHHHHHHhh
Confidence             789999999999999998874

>KOG0466 consensus Translation initiation factor 2, gamma subunit (eIF-2gamma; GTPase) [Translation, ribosomal structure and biogenesis]

Probab=98.35  E-value=2.6e-07  Score=67.84  Aligned_cols=112  Identities=16%  Similarity=0.147  Sum_probs=71.4

Q ss_pred             EEEEEeCCCccccccccccCcCCCcEEEEEEeCC--Cc--hhHHHHHHHHHHHHhhhCCCCCEEEEeeCCcccCCccccc
Q 036449           55 NLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLI--SK--ASYENVSKKWIPELKHYAPGVPIILVGTKLDLRDDKQFFI  130 (197)
Q Consensus        55 ~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~--~~--~s~~~~~~~~~~~i~~~~~~~~~ivv~nK~D~~~~~~~~~  130 (197)
                      .+.|.|+||++-.-+.......-.|++++.+..+  .+  ++-+.+.  -++.+ ..   ..++++-||.|+..+...  
T Consensus       126 HVSfVDCPGHDiLMaTMLnGaAvmDaalLlIA~NEsCPQPQTsEHLa--aveiM-~L---khiiilQNKiDli~e~~A--  197 (466)
T KOG0466|consen  126 HVSFVDCPGHDILMATMLNGAAVMDAALLLIAGNESCPQPQTSEHLA--AVEIM-KL---KHIIILQNKIDLIKESQA--  197 (466)
T ss_pred             EEEeccCCchHHHHHHHhcchHHhhhhhhhhhcCCCCCCCchhhHHH--HHHHh-hh---ceEEEEechhhhhhHHHH--
Confidence            4669999999866544333333356666666554  32  3333331  12222 22   468889999999876531  


Q ss_pred             CCCCCCcccHHHHHHHHHHhCC--CceEEeccCCCCCHHHHHHHHHHHHcCC
Q 036449          131 DHPGAVPISTAQGEELRKLIGA--PAYIECSSKTQQNVKAVFDAAIRVVLQP  180 (197)
Q Consensus       131 ~~~~~~~~~~~~~~~~~~~~~~--~~~~~~sa~~~~~i~~l~~~i~~~~~~~  180 (197)
                            ....++.+.|...-.+  .|++++||.-+.|++-+.+.|++.+--+
T Consensus       198 ------~eq~e~I~kFi~~t~ae~aPiiPisAQlkyNId~v~eyivkkIPvP  243 (466)
T KOG0466|consen  198 ------LEQHEQIQKFIQGTVAEGAPIIPISAQLKYNIDVVCEYIVKKIPVP  243 (466)
T ss_pred             ------HHHHHHHHHHHhccccCCCceeeehhhhccChHHHHHHHHhcCCCC
Confidence                  1234555666554322  2899999999999999999999987654

>KOG0099 consensus G protein subunit Galphas, small G protein superfamily [Signal transduction mechanisms]

Probab=98.35  E-value=1.7e-06  Score=62.36  Aligned_cols=72  Identities=19%  Similarity=0.269  Sum_probs=52.0

Q ss_pred             EEEEEEEeCCCccccccccccCcCCCcEEEEEEeCCCc----------hhHHHHHHHHHHHHhhhC--CCCCEEEEeeCC
Q 036449           53 TVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISK----------ASYENVSKKWIPELKHYA--PGVPIILVGTKL  120 (197)
Q Consensus        53 ~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~----------~s~~~~~~~~~~~i~~~~--~~~~~ivv~nK~  120 (197)
                      .+.++.+|.+||...+.-|...+..+.++|+|..-+..          ..+++. -.+...+....  ..+.+|++.||.
T Consensus       201 kv~FhMfDVGGQRDeRrKWIQcFndvtAiifv~acSsyn~vlrED~~qNRL~Ea-L~LFksiWnNRwL~tisvIlFLNKq  279 (379)
T KOG0099|consen  201 KVNFHMFDVGGQRDERRKWIQCFNDVTAIIFVVACSSYNMVLREDNQQNRLQEA-LNLFKSIWNNRWLRTISVILFLNKQ  279 (379)
T ss_pred             ccceeeeccCCchhhhhhHHHHhcCccEEEEEEeccchhhhhhcCCchhHHHHH-HHHHHHHHhhhHHhhhheeEEecHH
Confidence            36688999999999999999999999999999876531          112222 12233333332  468899999999


Q ss_pred             cccCC
Q 036449          121 DLRDD  125 (197)
Q Consensus       121 D~~~~  125 (197)
                      |+..+
T Consensus       280 Dllae  284 (379)
T KOG0099|consen  280 DLLAE  284 (379)
T ss_pred             HHHHH
Confidence            98643

>cd03112 CobW_like The function of this protein family is unkown

Probab=98.33  E-value=3.2e-06  Score=57.65  Aligned_cols=64  Identities=13%  Similarity=-0.008  Sum_probs=36.2

Q ss_pred             EEEEEEeCCCcccccccc--------ccCcCCCcEEEEEEeCCCchhHHHHHHHHHHHHhhhCCCCCEEEEeeCCcc
Q 036449           54 VNLGLWDTAGQEDYNRLR--------PLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDL  122 (197)
Q Consensus        54 ~~~~i~D~~G~~~~~~~~--------~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~~~ivv~nK~D~  122 (197)
                      ....++|+||...-....        ....-..+.++.++|..+..........+...+...    - +++.||+|+
T Consensus        87 ~d~I~IEt~G~~~p~~~~~~~~~~~~~~~~~~~d~vv~vvDa~~~~~~~~~~~~~~~Qi~~a----d-~ivlnk~dl  158 (158)
T cd03112          87 FDRIVIETTGLADPGPVAQTFFMDEELAERYLLDGVITLVDAKHANQHLDQQTEAQSQIAFA----D-RILLNKTDL  158 (158)
T ss_pred             CCEEEEECCCcCCHHHHHHHHhhchhhhcceeeccEEEEEEhhHhHHHhhccHHHHHHHHHC----C-EEEEecccC
Confidence            456689999954221111        112335789999999865544322113334444432    2 568999996

The amino acid sequence of YjiA protein in E. coli contains several conserved motifs that characterizes it as a P-loop GTPase. YijA gene is among the genes significantly induced in response to DNA-damage caused by mitomycin. YijA gene is a homologue of the CobW gene which encodes the cobalamin synthesis protein/P47K.

>KOG3859 consensus Septins (P-loop GTPases) [Cell cycle control, cell division, chromosome partitioning]

Probab=98.31  E-value=4.8e-06  Score=60.60  Aligned_cols=58  Identities=19%  Similarity=0.336  Sum_probs=43.4

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHhhCCCCCCCCCceeeeee-----EEEEECCeEEEEEEEeCCC
Q 036449            6 FIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFS-----ANVVVNGSTVNLGLWDTAG   63 (197)
Q Consensus         6 ~~~i~v~G~~~~GKstli~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~i~D~~G   63 (197)
                      .++|+.+|..|.|||||+..+++.++.....+.......     ....-.+..+.+++.||.|
T Consensus        42 ~FNilCvGETg~GKsTLmdtLFNt~f~~~p~~H~~~~V~L~~~TyelqEsnvrlKLtiv~tvG  104 (406)
T KOG3859|consen   42 CFNILCVGETGLGKSTLMDTLFNTKFESEPSTHTLPNVKLQANTYELQESNVRLKLTIVDTVG  104 (406)
T ss_pred             eEEEEEeccCCccHHHHHHHHhccccCCCCCccCCCCceeecchhhhhhcCeeEEEEEEeecc
Confidence            489999999999999999999999887664444422221     1122346778899999999

>PRK12289 GTPase RsgA; Reviewed

Probab=98.31  E-value=8.7e-07  Score=67.87  Aligned_cols=22  Identities=27%  Similarity=0.462  Sum_probs=20.1

Q ss_pred             EEEEcCCCCCHHHHHHHHhhCC
Q 036449            9 CVTVGDGAVGKTCLLISYTSNT   30 (197)
Q Consensus         9 i~v~G~~~~GKstli~~~~~~~   30 (197)
                      ++|+|++|||||||+|++....
T Consensus       175 ~v~iG~SgVGKSSLIN~L~~~~  196 (352)
T PRK12289        175 TVVAGPSGVGKSSLINRLIPDV  196 (352)
T ss_pred             EEEEeCCCCCHHHHHHHHcCcc
Confidence            7999999999999999999653

>TIGR00157 ribosome small subunit-dependent GTPase A

Probab=98.31  E-value=1e-06  Score=64.44  Aligned_cols=23  Identities=26%  Similarity=0.420  Sum_probs=20.6

Q ss_pred             EEEEEcCCCCCHHHHHHHHhhCC
Q 036449            8 KCVTVGDGAVGKTCLLISYTSNT   30 (197)
Q Consensus         8 ~i~v~G~~~~GKstli~~~~~~~   30 (197)
                      .++++|.+|||||||+|++....
T Consensus       122 ~~~~~G~sgvGKStLiN~L~~~~  144 (245)
T TIGR00157       122 ISVFAGQSGVGKSSLINALDPSV  144 (245)
T ss_pred             EEEEECCCCCCHHHHHHHHhhhh
Confidence            58999999999999999998653

The Aquifex aeolicus ortholog is split into consecutive open reading frames. Consequently, this model was build in fragment mode (-f option).

>COG1162 Predicted GTPases [General function prediction only]

Probab=98.30  E-value=7.2e-07  Score=65.93  Aligned_cols=58  Identities=17%  Similarity=0.175  Sum_probs=34.5

Q ss_pred             EEEEEcCCCCCHHHHHHHHhhCCC------CCCC-CCceeeeeeEEEEECCeEEEEEEEeCCCccccc
Q 036449            8 KCVTVGDGAVGKTCLLISYTSNTF------PTDY-VPTVFDNFSANVVVNGSTVNLGLWDTAGQEDYN   68 (197)
Q Consensus         8 ~i~v~G~~~~GKstli~~~~~~~~------~~~~-~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~   68 (197)
                      -.+++|.+|||||||+|++....-      +... ..-...+....+.+++...   ++||||...+.
T Consensus       166 ~svl~GqSGVGKSSLiN~L~p~~~~~t~eIS~~~~rGkHTTt~~~l~~l~~gG~---iiDTPGf~~~~  230 (301)
T COG1162         166 ITVLLGQSGVGKSTLINALLPELNQKTGEISEKLGRGRHTTTHVELFPLPGGGW---IIDTPGFRSLG  230 (301)
T ss_pred             eEEEECCCCCcHHHHHHhhCchhhhhhhhhcccCCCCCCccceEEEEEcCCCCE---EEeCCCCCccC
Confidence            478999999999999999986322      1111 1111222233334432223   79999986544

>cd01854 YjeQ_engC YjeQ/EngC

Probab=98.29  E-value=1.1e-06  Score=65.76  Aligned_cols=24  Identities=29%  Similarity=0.436  Sum_probs=21.3

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhhCC
Q 036449            7 IKCVTVGDGAVGKTCLLISYTSNT   30 (197)
Q Consensus         7 ~~i~v~G~~~~GKstli~~~~~~~   30 (197)
                      -.++++|++|+|||||++.+.+..
T Consensus       162 k~~~~~G~sg~GKSTlin~l~~~~  185 (287)
T cd01854         162 KTSVLVGQSGVGKSTLINALLPDL  185 (287)
T ss_pred             ceEEEECCCCCCHHHHHHHHhchh
Confidence            468999999999999999998754

YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation.

>TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH

Probab=98.27  E-value=1.8e-06  Score=66.69  Aligned_cols=54  Identities=22%  Similarity=0.308  Sum_probs=34.3

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhhCCC-------CCCCCCceeeeeeEEEEECCeEEEEEEEeCCCcc
Q 036449            7 IKCVTVGDGAVGKTCLLISYTSNTF-------PTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQE   65 (197)
Q Consensus         7 ~~i~v~G~~~~GKstli~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~   65 (197)
                      .+++++|.+|||||||+|++.....       ....+.|+...  ..+.+++   .+.++||||-.
T Consensus       155 ~~v~~vG~~nvGKStliN~l~~~~~~~~~~~~~s~~pgtT~~~--~~~~~~~---~~~l~DtPG~~  215 (360)
T TIGR03597       155 KDVYVVGVTNVGKSSLINKLLKQNNGDKDVITTSPFPGTTLDL--IEIPLDD---GHSLYDTPGII  215 (360)
T ss_pred             CeEEEECCCCCCHHHHHHHHHhhccCCcceeeecCCCCeEeeE--EEEEeCC---CCEEEECCCCC
Confidence            4799999999999999999997432       12222323221  1222322   24599999954

This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli.

>PF11111 CENP-M: Centromere protein M (CENP-M); InterPro: IPR020987 The prime candidate for specifying centromere identity is the array of nucleosomes assembles associated with CENP-A []

Probab=98.26  E-value=0.00014  Score=49.45  Aligned_cols=141  Identities=12%  Similarity=0.126  Sum_probs=96.8

Q ss_pred             CCCCceeEEEEEcCCCCCHHHHHHHHhhCCCCCCCCCceeeeeeEEEEECCeEEEEEEEeCCCcc---ccccccccCcCC
Q 036449            1 MSASRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQE---DYNRLRPLSYRG   77 (197)
Q Consensus         1 m~~~~~~~i~v~G~~~~GKstli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~---~~~~~~~~~~~~   77 (197)
                      |+..+.-.|+++|..+.++..|..++....-  .                   ..+++.-...-+   +....++    .
T Consensus        10 lp~ln~atiLLVg~e~~~~~~LA~a~l~~~~--~-------------------~~l~Vh~a~sLPLp~e~~~lRp----r   64 (176)
T PF11111_consen   10 LPELNTATILLVGTEEALLQQLAEAMLEEDK--E-------------------FKLKVHLAKSLPLPSENNNLRP----R   64 (176)
T ss_pred             CCCcceeEEEEecccHHHHHHHHHHHHhhcc--c-------------------eeEEEEEeccCCCcccccCCCc----e
Confidence            4566778999999999999999999986321  0                   112222211110   1111122    3


Q ss_pred             CcEEEEEEeCCCchhHHHHHHHHHHHHhhhCCCCCEEEEeeCCcccCCcccccCCCCCCcccHHHHHHHHHHhCCCceEE
Q 036449           78 ADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPISTAQGEELRKLIGAPAYIE  157 (197)
Q Consensus        78 ~~~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  157 (197)
                      .|.++|++|....-+++.+ +.-+..+...+.--.+.++++-....+...          +...+..+++..|+. |++.
T Consensus        65 IDlIVFvinl~sk~SL~~v-e~SL~~vd~~fflGKVCfl~t~a~~~~~~s----------v~~~~V~kla~~y~~-plL~  132 (176)
T PF11111_consen   65 IDLIVFVINLHSKYSLQSV-EASLSHVDPSFFLGKVCFLATNAGRESHCS----------VHPNEVRKLAATYNS-PLLF  132 (176)
T ss_pred             eEEEEEEEecCCcccHHHH-HHHHhhCChhhhccceEEEEcCCCcccccc----------cCHHHHHHHHHHhCC-CEEE
Confidence            5999999999999999988 555555554443334555565555544332          678889999999998 8999


Q ss_pred             eccCCCCCHHHHHHHHHHHHc
Q 036449          158 CSSKTQQNVKAVFDAAIRVVL  178 (197)
Q Consensus       158 ~sa~~~~~i~~l~~~i~~~~~  178 (197)
                      +.-.+.++...+-+.|.+.+.
T Consensus       133 ~~le~~~~~~~lAqRLL~~lq  153 (176)
T PF11111_consen  133 ADLENEEGRTSLAQRLLRMLQ  153 (176)
T ss_pred             eecccchHHHHHHHHHHHHHH
Confidence            999988888888888887654

CENP-A recruits a nucleosome associated complex (CENP-A-NAC complex) comprised of CENP-M which this entry represents, along with two other proteins []. Assembly of the CENP-A NAC at centromeres is partly dependent on CENP-M. The CENP-A NAC is essential, as disruption of the complex causes errors of chromosome alignment and segregation that preclude cell survival [].

>KOG4273 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.23  E-value=4.3e-05  Score=54.95  Aligned_cols=164  Identities=18%  Similarity=0.200  Sum_probs=93.7

Q ss_pred             eeEEEEEcCCCC--CHHHHHHHHhhCCCCCCCCCceeeee-eEEEEECCeE----EEEEEEeCCCccccccccccCcCCC
Q 036449            6 FIKCVTVGDGAV--GKTCLLISYTSNTFPTDYVPTVFDNF-SANVVVNGST----VNLGLWDTAGQEDYNRLRPLSYRGA   78 (197)
Q Consensus         6 ~~~i~v~G~~~~--GKstli~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~----~~~~i~D~~G~~~~~~~~~~~~~~~   78 (197)
                      ..-++|+|.+|+  ||.+|+.++....|.....+.....+ ..+  ++++-    +.+.+.  +--+++.--.....+..
T Consensus         4 rp~~lv~g~sgvfsg~~~ll~rl~s~dfed~ses~~~te~hgwt--id~kyysadi~lcis--hicde~~lpn~~~a~pl   79 (418)
T KOG4273|consen    4 RPCALVTGCSGVFSGDQLLLHRLGSEDFEDESESNDATEFHGWT--IDNKYYSADINLCIS--HICDEKFLPNAEIAEPL   79 (418)
T ss_pred             CceEEEecccccccchHHHHHHhcchhheeeccccCceeeeceE--ecceeeecceeEEee--cccchhccCCcccccce
Confidence            356899999999  99999999998877654333322121 111  22211    222221  11111111111233445


Q ss_pred             cEEEEEEeCCCchhHHHHHHHHHHHHhhhCCCCCEEEEeeCCcccCCcccc-------------------------cC-C
Q 036449           79 DVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLRDDKQFF-------------------------ID-H  132 (197)
Q Consensus        79 ~~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~~~ivv~nK~D~~~~~~~~-------------------------~~-~  132 (197)
                      .++++|||++....+..+ ..|+.-..... =-.++.++||.|..++....                         +. .
T Consensus        80 ~a~vmvfdlse~s~l~al-qdwl~htdins-fdillcignkvdrvphhlahdeyrrrl~kasdpsrdl~~di~dfgiset  157 (418)
T KOG4273|consen   80 QAFVMVFDLSEKSGLDAL-QDWLPHTDINS-FDILLCIGNKVDRVPHHLAHDEYRRRLAKASDPSRDLMIDICDFGISET  157 (418)
T ss_pred             eeEEEEEeccchhhhHHH-Hhhcccccccc-chhheecccccccccchhhhhHHHHHHHhhcCcchhHhhhhhhcccccc
Confidence            799999999999988887 78866332221 02346778999976542111                         00 0


Q ss_pred             C--------CCCcccHHHHHHHHHHhCCCceEEeccCCC------------CCHHHHHHHHHHH
Q 036449          133 P--------GAVPISTAQGEELRKLIGAPAYIECSSKTQ------------QNVKAVFDAAIRV  176 (197)
Q Consensus       133 ~--------~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~------------~~i~~l~~~i~~~  176 (197)
                      .        .......-.+.+|+.+.++ .|++.++.+.            .|++.+|..+-..
T Consensus       158 egssllgsedasldirga~lewc~e~~~-efieacasn~dfd~c~~~dgdsqgverifgal~ah  220 (418)
T KOG4273|consen  158 EGSSLLGSEDASLDIRGAALEWCLEHGF-EFIEACASNEDFDECDDDDGDSQGVERIFGALNAH  220 (418)
T ss_pred             ccccccccccchhhHHHHHHHHHHhcCc-eeeeecCCccccchhhccCcchhhHHHHHHHhhhc
Confidence            0        0111122345788888888 8999888543            3788888877654

>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]

Probab=98.23  E-value=6e-05  Score=50.64  Aligned_cols=56  Identities=21%  Similarity=0.228  Sum_probs=41.5

Q ss_pred             ceeEEEEEcCCCCCHHHHHHHHhhCCCCCCCCCceeeeeeEEEEECCeEEEEEEEeCC
Q 036449            5 RFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWDTA   62 (197)
Q Consensus         5 ~~~~i~v~G~~~~GKstli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~   62 (197)
                      ..+||.+-|+|||||||++.++...--...  -..+..+..++..+++..=|.+.|+.
T Consensus         4 ~~mki~ITG~PGvGKtTl~~ki~e~L~~~g--~kvgGf~t~EVR~gGkR~GF~Ivdl~   59 (179)
T COG1618           4 MAMKIFITGRPGVGKTTLVLKIAEKLREKG--YKVGGFITPEVREGGKRIGFKIVDLA   59 (179)
T ss_pred             cceEEEEeCCCCccHHHHHHHHHHHHHhcC--ceeeeEEeeeeecCCeEeeeEEEEcc
Confidence            468999999999999999987764321111  23355667777778888888888887

>PRK10416 signal recognition particle-docking protein FtsY; Provisional

Probab=98.21  E-value=5.8e-05  Score=57.30  Aligned_cols=95  Identities=11%  Similarity=0.073  Sum_probs=53.2

Q ss_pred             EEEEEEEeCCCcccccc--------cc----ccCcCCCcEEEEEEeCCCchhHHHHHHHHHHHHhhhCCCCCEEEEeeCC
Q 036449           53 TVNLGLWDTAGQEDYNR--------LR----PLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKL  120 (197)
Q Consensus        53 ~~~~~i~D~~G~~~~~~--------~~----~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~~~ivv~nK~  120 (197)
                      .+.+.++||||......        ..    ...-...+..++|.|++.+.  +.+ .. ...+...  --+.-+|.||.
T Consensus       196 ~~D~ViIDTaGr~~~~~~l~~eL~~~~~v~~~~~~~~p~~~~LVl~a~~g~--~~~-~~-a~~f~~~--~~~~giIlTKl  269 (318)
T PRK10416        196 GIDVLIIDTAGRLHNKTNLMEELKKIKRVIKKADPDAPHEVLLVLDATTGQ--NAL-SQ-AKAFHEA--VGLTGIILTKL  269 (318)
T ss_pred             CCCEEEEeCCCCCcCCHHHHHHHHHHHHHHhhhcCCCCceEEEEEECCCCh--HHH-HH-HHHHHhh--CCCCEEEEECC
Confidence            35678999999543211        11    11123467889999998542  222 11 1112111  12457889999


Q ss_pred             cccCCcccccCCCCCCcccHHHHHHHHHHhCCCceEEeccCCCCCHHHHH
Q 036449          121 DLRDDKQFFIDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQQNVKAVF  170 (197)
Q Consensus       121 D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~l~  170 (197)
                      |....-.              .+...+...+. |+..++  +|++++++-
T Consensus       270 D~t~~~G--------------~~l~~~~~~~~-Pi~~v~--~Gq~~~Dl~  302 (318)
T PRK10416        270 DGTAKGG--------------VVFAIADELGI-PIKFIG--VGEGIDDLQ  302 (318)
T ss_pred             CCCCCcc--------------HHHHHHHHHCC-CEEEEe--CCCChhhCc
Confidence            9654322              23344566677 777777  677776653

>KOG0447 consensus Dynamin-like GTP binding protein [General function prediction only]

Probab=98.20  E-value=1.8e-05  Score=62.89  Aligned_cols=71  Identities=18%  Similarity=0.199  Sum_probs=46.0

Q ss_pred             EEEEEeCCCcc-------------ccccccccCcCCCcEEEEEEeCCCchhHHHHHHHHHHHHhhhCCCCCEEEEeeCCc
Q 036449           55 NLGLWDTAGQE-------------DYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLD  121 (197)
Q Consensus        55 ~~~i~D~~G~~-------------~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~~~ivv~nK~D  121 (197)
                      +..+.|.||.-             ...++...+..+.+++|+|+--..-+.-......+...+...  +...|+|.+|.|
T Consensus       413 RMVLVDLPGvIsTvT~dMA~dTKd~I~~msKayM~NPNAIILCIQDGSVDAERSnVTDLVsq~DP~--GrRTIfVLTKVD  490 (980)
T KOG0447|consen  413 RMVLVDLPGVINTVTSGMAPDTKETIFSISKAYMQNPNAIILCIQDGSVDAERSIVTDLVSQMDPH--GRRTIFVLTKVD  490 (980)
T ss_pred             eeEEecCCchhhhhcccccccchHHHHHHHHHHhcCCCeEEEEeccCCcchhhhhHHHHHHhcCCC--CCeeEEEEeecc
Confidence            46689999921             223555678889999999986433322222223333333333  788999999999


Q ss_pred             ccCCcc
Q 036449          122 LRDDKQ  127 (197)
Q Consensus       122 ~~~~~~  127 (197)
                      +.+.+.
T Consensus       491 lAEknl  496 (980)
T KOG0447|consen  491 LAEKNV  496 (980)
T ss_pred             hhhhcc
Confidence            988754

>PRK00098 GTPase RsgA; Reviewed

Probab=98.17  E-value=3.2e-06  Score=63.68  Aligned_cols=23  Identities=30%  Similarity=0.447  Sum_probs=20.6

Q ss_pred             EEEEEcCCCCCHHHHHHHHhhCC
Q 036449            8 KCVTVGDGAVGKTCLLISYTSNT   30 (197)
Q Consensus         8 ~i~v~G~~~~GKstli~~~~~~~   30 (197)
                      .++++|++|+|||||+|.+....
T Consensus       166 ~~~~~G~sgvGKStlin~l~~~~  188 (298)
T PRK00098        166 VTVLAGQSGVGKSTLLNALAPDL  188 (298)
T ss_pred             eEEEECCCCCCHHHHHHHHhCCc
Confidence            58999999999999999998654

>KOG1491 consensus Predicted GTP-binding protein (ODN superfamily) [General function prediction only]

Probab=98.15  E-value=1.1e-05  Score=60.38  Aligned_cols=85  Identities=20%  Similarity=0.171  Sum_probs=54.5

Q ss_pred             CceeEEEEEcCCCCCHHHHHHHHhhCCCC-CCCCCceeeeeeEEEEE---------------CCeEEEEEEEeCCCccc-
Q 036449            4 SRFIKCVTVGDGAVGKTCLLISYTSNTFP-TDYVPTVFDNFSANVVV---------------NGSTVNLGLWDTAGQED-   66 (197)
Q Consensus         4 ~~~~~i~v~G~~~~GKstli~~~~~~~~~-~~~~~~~~~~~~~~~~~---------------~~~~~~~~i~D~~G~~~-   66 (197)
                      +..++|.++|.++|||||+++.+...... .+++.++-+-....+.+               ......++++|++|.-. 
T Consensus        18 ~~~lkiGIVGlPNvGKST~fnalT~~~a~~~NfPF~TIdPn~a~V~v~d~Rfd~l~~~Y~~~~~vpa~l~v~DIAGLvkG   97 (391)
T KOG1491|consen   18 GNNLKIGIVGLPNVGKSTFFNALTKSKAGAANFPFCTIDPNEARVEVPDSRFDLLCPIYGPKSKVPAFLTVYDIAGLVKG   97 (391)
T ss_pred             CCcceeeEeeCCCCchHHHHHHHhcCCCCccCCCcceeccccceeecCchHHHHHHHhcCCcceeeeeEEEEeecccccC
Confidence            35689999999999999999999987664 44444442222212211               12346789999999321 


Q ss_pred             ------cccccccCcCCCcEEEEEEeCC
Q 036449           67 ------YNRLRPLSYRGADVFILAFSLI   88 (197)
Q Consensus        67 ------~~~~~~~~~~~~~~~i~v~d~~   88 (197)
                            ........++.+|+++-|++..
T Consensus        98 As~G~GLGN~FLs~iR~vDaifhVVr~f  125 (391)
T KOG1491|consen   98 ASAGEGLGNKFLSHIRHVDAIFHVVRAF  125 (391)
T ss_pred             cccCcCchHHHHHhhhhccceeEEEEec
Confidence                  1122223456789888888764

>TIGR00064 ftsY signal recognition particle-docking protein FtsY

Probab=98.13  E-value=1.5e-05  Score=59.18  Aligned_cols=95  Identities=12%  Similarity=0.048  Sum_probs=54.2

Q ss_pred             EEEEEEEeCCCcccccccc------------ccCcCCCcEEEEEEeCCCchhHHHHHHHHHHHHhhhCCCCCEEEEeeCC
Q 036449           53 TVNLGLWDTAGQEDYNRLR------------PLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKL  120 (197)
Q Consensus        53 ~~~~~i~D~~G~~~~~~~~------------~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~~~ivv~nK~  120 (197)
                      .+.+.++||||........            ...-..+|..++|+|++-..  +.+ .. ...+.+..  -+.-+|.||.
T Consensus       154 ~~D~ViIDT~G~~~~d~~~~~el~~~~~~~~~~~~~~~~~~~LVl~a~~~~--~~~-~~-~~~f~~~~--~~~g~IlTKl  227 (272)
T TIGR00064       154 NIDVVLIDTAGRLQNKVNLMDELKKIKRVIKKVDKDAPDEVLLVLDATTGQ--NAL-EQ-AKVFNEAV--GLTGIILTKL  227 (272)
T ss_pred             CCCEEEEeCCCCCcchHHHHHHHHHHHHHHhcccCCCCceEEEEEECCCCH--HHH-HH-HHHHHhhC--CCCEEEEEcc
Confidence            3567899999964322111            11123488999999997542  222 11 22222221  2457889999


Q ss_pred             cccCCcccccCCCCCCcccHHHHHHHHHHhCCCceEEeccCCCCCHHHHH
Q 036449          121 DLRDDKQFFIDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQQNVKAVF  170 (197)
Q Consensus       121 D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~l~  170 (197)
                      |....-.              .+.......+. |+..++  +|.+++++.
T Consensus       228 De~~~~G--------------~~l~~~~~~~~-Pi~~~~--~Gq~~~dl~  260 (272)
T TIGR00064       228 DGTAKGG--------------IILSIAYELKL-PIKFIG--VGEKIDDLA  260 (272)
T ss_pred             CCCCCcc--------------HHHHHHHHHCc-CEEEEe--CCCChHhCc
Confidence            9865432              22344445566 776666  667776653

There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.

>KOG1534 consensus Putative transcription factor FET5 [Transcription]

Probab=98.13  E-value=2.4e-06  Score=59.63  Aligned_cols=71  Identities=17%  Similarity=0.141  Sum_probs=47.4

Q ss_pred             CCCEEEEeeCCcccCCcccc-----c--------CCCCC------CcccHHHHHHHHHHhCCCceEEeccCCCCCHHHHH
Q 036449          110 GVPIILVGTKLDLRDDKQFF-----I--------DHPGA------VPISTAQGEELRKLIGAPAYIECSSKTQQNVKAVF  170 (197)
Q Consensus       110 ~~~~ivv~nK~D~~~~~~~~-----~--------~~~~~------~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~l~  170 (197)
                      ..|-|=|.+|+|+.......     .        ..+..      ..........+...++.+.|++..+.+.++++.++
T Consensus       164 E~P~INvlsKMDLlk~~~k~~l~~Fl~~d~~~l~~~~~~~~~s~Kf~~L~~~i~~~v~d~~Mv~FlPl~~~~eeSi~~iL  243 (273)
T KOG1534|consen  164 EVPHINVLSKMDLLKDKNKKELERFLNPDEYLLLEDSEINLRSPKFKKLTKCIAQLVDDYSMVNFLPLDSSDEESINIIL  243 (273)
T ss_pred             cCcchhhhhHHHHhhhhhHHHHHHhcCCchhhhhcccccccccHHHHHHHHHHHHHhccccceeeeecCCCCHHHHHHHH
Confidence            68899999999997652211     0        00000      11112234466678888899999999999999999


Q ss_pred             HHHHHHHcCC
Q 036449          171 DAAIRVVLQP  180 (197)
Q Consensus       171 ~~i~~~~~~~  180 (197)
                      ..|...+.-.
T Consensus       244 ~~ID~aiQy~  253 (273)
T KOG1534|consen  244 SYIDDAIQYG  253 (273)
T ss_pred             HHHHHHHHhc
Confidence            9988766544

>PRK13796 GTPase YqeH; Provisional

Probab=98.13  E-value=3.7e-06  Score=65.08  Aligned_cols=23  Identities=26%  Similarity=0.297  Sum_probs=20.9

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhhC
Q 036449            7 IKCVTVGDGAVGKTCLLISYTSN   29 (197)
Q Consensus         7 ~~i~v~G~~~~GKstli~~~~~~   29 (197)
                      -+++++|.+|||||||+|++...
T Consensus       161 ~~v~vvG~~NvGKSTLiN~L~~~  183 (365)
T PRK13796        161 RDVYVVGVTNVGKSTLINRIIKE  183 (365)
T ss_pred             CeEEEEcCCCCcHHHHHHHHHhh
Confidence            47999999999999999999864

>PRK14974 cell division protein FtsY; Provisional

Probab=98.08  E-value=1.7e-05  Score=60.43  Aligned_cols=94  Identities=16%  Similarity=0.102  Sum_probs=52.7

Q ss_pred             EEEEEEeCCCcccccc-c---cccC--cCCCcEEEEEEeCCCchhHHHHHHHHHHHHhhhCCCCCEEEEeeCCcccCCcc
Q 036449           54 VNLGLWDTAGQEDYNR-L---RPLS--YRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLRDDKQ  127 (197)
Q Consensus        54 ~~~~i~D~~G~~~~~~-~---~~~~--~~~~~~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~~~ivv~nK~D~~~~~~  127 (197)
                      +.+.++||+|...... +   ...+  ..+.|.+++|.|++.+......    ...+...  --+--++.||.|....-.
T Consensus       223 ~DvVLIDTaGr~~~~~~lm~eL~~i~~~~~pd~~iLVl~a~~g~d~~~~----a~~f~~~--~~~~giIlTKlD~~~~~G  296 (336)
T PRK14974        223 IDVVLIDTAGRMHTDANLMDELKKIVRVTKPDLVIFVGDALAGNDAVEQ----AREFNEA--VGIDGVILTKVDADAKGG  296 (336)
T ss_pred             CCEEEEECCCccCCcHHHHHHHHHHHHhhCCceEEEeeccccchhHHHH----HHHHHhc--CCCCEEEEeeecCCCCcc
Confidence            4577999999643211 1   0111  2257889999999765322221    1222211  123467899999965432


Q ss_pred             cccCCCCCCcccHHHHHHHHHHhCCCceEEeccCCCCCHHHHH
Q 036449          128 FFIDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQQNVKAVF  170 (197)
Q Consensus       128 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~l~  170 (197)
                                    .+...+...+. |+..++  +|.+++++.
T Consensus       297 --------------~~ls~~~~~~~-Pi~~i~--~Gq~v~Dl~  322 (336)
T PRK14974        297 --------------AALSIAYVIGK-PILFLG--VGQGYDDLI  322 (336)
T ss_pred             --------------HHHHHHHHHCc-CEEEEe--CCCChhhcc
Confidence                          12334444566 676666  688887664

>PF06858 NOG1: Nucleolar GTP-binding protein 1 (NOG1); InterPro: IPR010674 This domain represents a conserved region of approximately 60 residues in length within nucleolar GTP-binding protein 1 (NOG1)

Probab=98.04  E-value=3e-05  Score=42.60  Aligned_cols=44  Identities=27%  Similarity=0.351  Sum_probs=30.6

Q ss_pred             CCcEEEEEEeCCCc--hhHHHHHHHHHHHHhhhCCCCCEEEEeeCCc
Q 036449           77 GADVFILAFSLISK--ASYENVSKKWIPELKHYAPGVPIILVGTKLD  121 (197)
Q Consensus        77 ~~~~~i~v~d~~~~--~s~~~~~~~~~~~i~~~~~~~~~ivv~nK~D  121 (197)
                      -.++++|++|.+..  -+.++- ..++..++..+++.|+++|.||+|
T Consensus        13 L~~~ilfi~D~Se~CGysie~Q-~~L~~~ik~~F~~~P~i~V~nK~D   58 (58)
T PF06858_consen   13 LADAILFIIDPSEQCGYSIEEQ-LSLFKEIKPLFPNKPVIVVLNKID   58 (58)
T ss_dssp             T-SEEEEEE-TT-TTSS-HHHH-HHHHHHHHHHTTTS-EEEEE--TT
T ss_pred             hcceEEEEEcCCCCCCCCHHHH-HHHHHHHHHHcCCCCEEEEEeccC
Confidence            36799999999764  445544 577899999999999999999998

The NOG1 family includes eukaryotic, bacterial and archaeal proteins. In Saccharomyces cerevisiae, the NOG1 gene has been shown to be essential for cell viability, suggesting that NOG1 may play an important role in nucleolar functions. In particular, NOG1 is believed to be functionally linked to ribosome biogenesis, which occurs in the nucleolus. In eukaryotes, NOG1 mutants were found to disrupt the biogenesis of the 60S ribosomal subunit []. The DRG and OBG proteins as well as the prokaryotic NOG-like proteins are homologous throughout their length to the amino half of eukaryotic NOG1, which contains the GTP binding motifs (IPR006073 from INTERPRO); the N-terminal GTP-binding motif is required for function.; GO: 0005525 GTP binding; PDB: 2E87_A.

>COG1162 Predicted GTPases [General function prediction only]

Probab=98.02  E-value=9.2e-05  Score=55.02  Aligned_cols=92  Identities=17%  Similarity=0.182  Sum_probs=66.3

Q ss_pred             ccCcCCCcEEEEEEeCCCchhHHHHHHHHHHHHhhhCCCCCEEEEeeCCcccCCcccccCCCCCCcccHHHHHHHHHHhC
Q 036449           72 PLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPISTAQGEELRKLIG  151 (197)
Q Consensus        72 ~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  151 (197)
                      .-...+.|-.++|+.+.+|+--....++++-.....  ++.-+|+.||+|+.....          ....+........+
T Consensus        74 Rp~v~n~d~~iiIvs~~~P~~~~~~ldR~Lv~ae~~--gi~pvIvlnK~DL~~~~~----------~~~~~~~~~y~~~g  141 (301)
T COG1162          74 RPPVANNDQAIIVVSLVDPDFNTNLLDRYLVLAEAG--GIEPVIVLNKIDLLDDEE----------AAVKELLREYEDIG  141 (301)
T ss_pred             CCcccccceEEEEEeccCCCCCHHHHHHHHHHHHHc--CCcEEEEEEccccCcchH----------HHHHHHHHHHHhCC
Confidence            334455777777788777754444447777776666  788889999999987543          11134555667778


Q ss_pred             CCceEEeccCCCCCHHHHHHHHHHH
Q 036449          152 APAYIECSSKTQQNVKAVFDAAIRV  176 (197)
Q Consensus       152 ~~~~~~~sa~~~~~i~~l~~~i~~~  176 (197)
                      . +.+.+|++++.+++++...+...
T Consensus       142 y-~v~~~s~~~~~~~~~l~~~l~~~  165 (301)
T COG1162         142 Y-PVLFVSAKNGDGLEELAELLAGK  165 (301)
T ss_pred             e-eEEEecCcCcccHHHHHHHhcCC
Confidence            7 89999999999999999887653

>PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency []

Probab=97.96  E-value=1.9e-05  Score=54.33  Aligned_cols=52  Identities=23%  Similarity=0.227  Sum_probs=31.8

Q ss_pred             EEEEEcCCCCCHHHHHHHHhhCCCCCCCCCceeeeeeEEEEECCeEEEEEEEeC
Q 036449            8 KCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWDT   61 (197)
Q Consensus         8 ~i~v~G~~~~GKstli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~   61 (197)
                      ||++-|++|+|||||++++...--..  .-..+..++....-++..+-+.+.|.
T Consensus         1 ~i~iTG~pG~GKTTll~k~i~~l~~~--~~~v~Gf~t~evr~~g~r~GF~iv~l   52 (168)
T PF03266_consen    1 HIFITGPPGVGKTTLLKKVIEELKKK--GLPVGGFYTEEVRENGRRIGFDIVDL   52 (168)
T ss_dssp             EEEEES-TTSSHHHHHHHHHHHHHHT--CGGEEEEEEEEEETTSSEEEEEEEET
T ss_pred             CEEEECcCCCCHHHHHHHHHHHhhcc--CCccceEEeecccCCCceEEEEEEEC
Confidence            68999999999999998877532111  11223344444444555555666666

It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A.

>KOG0469 consensus Elongation factor 2 [Translation, ribosomal structure and biogenesis]

Probab=97.93  E-value=3.1e-05  Score=60.90  Aligned_cols=116  Identities=16%  Similarity=0.186  Sum_probs=78.2

Q ss_pred             CceeEEEEEcCCCCCHHHHHHHHhhCCCC--------CCCCCceeeeeeEEEEE-----------------------CCe
Q 036449            4 SRFIKCVTVGDGAVGKTCLLISYTSNTFP--------TDYVPTVFDNFSANVVV-----------------------NGS   52 (197)
Q Consensus         4 ~~~~~i~v~G~~~~GKstli~~~~~~~~~--------~~~~~~~~~~~~~~~~~-----------------------~~~   52 (197)
                      .+.=++-|+-+...|||||...+....-.        ..+..|-.+.....+++                       ++.
T Consensus        17 ~NiRNmSVIAHVDHGKSTLTDsLV~kAgIis~akaGe~Rf~DtRkDEQeR~iTIKStAISl~~e~~~~dl~~~k~~~d~~   96 (842)
T KOG0469|consen   17 KNIRNMSVIAHVDHGKSTLTDSLVQKAGIISAAKAGETRFTDTRKDEQERGITIKSTAISLFFEMSDDDLKFIKQEGDGN   96 (842)
T ss_pred             cccccceEEEEecCCcchhhHHHHHhhceeeecccCCccccccccchhhcceEeeeeeeeehhhhhHhHHHHhcCCCCCc
Confidence            34456889999999999999888753211        11111111111111111                       345


Q ss_pred             EEEEEEEeCCCccccccccccCcCCCcEEEEEEeCCCchhHHHHHHHHHHHHhhhCCCCCEEEEeeCCccc
Q 036449           53 TVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLR  123 (197)
Q Consensus        53 ~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~~~ivv~nK~D~~  123 (197)
                      ...++++|.|||-+|.+.....++-.|+.+.|+|--++-..+.- .-+.+.+..+   +.-+++.||.|..
T Consensus        97 ~FLiNLIDSPGHVDFSSEVTAALRVTDGALVVVDcv~GvCVQTE-TVLrQA~~ER---IkPvlv~NK~DRA  163 (842)
T KOG0469|consen   97 GFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDCVSGVCVQTE-TVLRQAIAER---IKPVLVMNKMDRA  163 (842)
T ss_pred             ceeEEeccCCCcccchhhhhheeEeccCcEEEEEccCceEechH-HHHHHHHHhh---ccceEEeehhhHH
Confidence            67899999999999999988899999999999998877655543 4455666665   3446679999963

>KOG0464 consensus Elongation factor G [Translation, ribosomal structure and biogenesis]

Probab=97.93  E-value=3.5e-06  Score=64.60  Aligned_cols=116  Identities=17%  Similarity=0.059  Sum_probs=79.4

Q ss_pred             ceeEEEEEcCCCCCHHHHHHHHhhCCC--------CCCCCCce--------e-eeeeEEEEECCeEEEEEEEeCCCcccc
Q 036449            5 RFIKCVTVGDGAVGKTCLLISYTSNTF--------PTDYVPTV--------F-DNFSANVVVNGSTVNLGLWDTAGQEDY   67 (197)
Q Consensus         5 ~~~~i~v~G~~~~GKstli~~~~~~~~--------~~~~~~~~--------~-~~~~~~~~~~~~~~~~~i~D~~G~~~~   67 (197)
                      +.=+|.++.+-.+||||...+++.-..        .....-|.        + ...+.-+.++=+.++++++||||+-+|
T Consensus        36 kirnigiiahidagktttterily~ag~~~s~g~vddgdtvtdfla~erergitiqsaav~fdwkg~rinlidtpghvdf  115 (753)
T KOG0464|consen   36 KIRNIGIIAHIDAGKTTTTERILYLAGAIHSAGDVDDGDTVTDFLAIERERGITIQSAAVNFDWKGHRINLIDTPGHVDF  115 (753)
T ss_pred             hhhcceeEEEecCCCchhHHHHHHHhhhhhcccccCCCchHHHHHHHHHhcCceeeeeeeecccccceEeeecCCCcceE
Confidence            345789999999999999988764211        11111110        0 011222333334477889999999999


Q ss_pred             ccccccCcCCCcEEEEEEeCCCchhHHHHHHHHHHHHhhhCCCCCEEEEeeCCcccC
Q 036449           68 NRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLRD  124 (197)
Q Consensus        68 ~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~~~ivv~nK~D~~~  124 (197)
                      +-.....++-.|+++.|+|.+-+-..+.+ ..|.+.-..   ++|-+.+.||+|...
T Consensus       116 ~leverclrvldgavav~dasagve~qtl-tvwrqadk~---~ip~~~finkmdk~~  168 (753)
T KOG0464|consen  116 RLEVERCLRVLDGAVAVFDASAGVEAQTL-TVWRQADKF---KIPAHCFINKMDKLA  168 (753)
T ss_pred             EEEHHHHHHHhcCeEEEEeccCCccccee-eeehhcccc---CCchhhhhhhhhhhh
Confidence            98888888889999999999887655555 455543222   689999999999864

>PRK13695 putative NTPase; Provisional

Probab=97.92  E-value=0.00059  Score=47.26  Aligned_cols=22  Identities=32%  Similarity=0.448  Sum_probs=19.3

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhh
Q 036449            7 IKCVTVGDGAVGKTCLLISYTS   28 (197)
Q Consensus         7 ~~i~v~G~~~~GKstli~~~~~   28 (197)
                      ++|++.|++|+|||||+..+..
T Consensus         1 ~~i~ltG~~G~GKTTll~~i~~   22 (174)
T PRK13695          1 MKIGITGPPGVGKTTLVLKIAE   22 (174)
T ss_pred             CEEEEECCCCCCHHHHHHHHHH
Confidence            5899999999999999987643

>KOG0459 consensus Polypeptide release factor 3 [Translation, ribosomal structure and biogenesis]

Probab=97.91  E-value=3.2e-05  Score=59.19  Aligned_cols=165  Identities=16%  Similarity=0.109  Sum_probs=92.1

Q ss_pred             CCceeEEEEEcCCCCCHHHHHHHHhhCC-------------------CCCCCCC----ce------eeeeeEE-EEECCe
Q 036449            3 ASRFIKCVTVGDGAVGKTCLLISYTSNT-------------------FPTDYVP----TV------FDNFSAN-VVVNGS   52 (197)
Q Consensus         3 ~~~~~~i~v~G~~~~GKstli~~~~~~~-------------------~~~~~~~----~~------~~~~~~~-~~~~~~   52 (197)
                      +...++++++|...+||||+-..+....                   -..-|.+    |.      +-..... -.+.-.
T Consensus        76 pk~hvn~vfighVdagkstigg~il~ltg~Vd~Rt~ekyereake~~rEswylsW~ldtn~EeR~kgKtvEvGrA~FEte  155 (501)
T KOG0459|consen   76 PKEHVNAVFIGHVDAGKSTIGGNILFLTGMVDKRTLEKYEREAKEKNRESWYLSWALDTNGEERDKGKTVEVGRAYFETE  155 (501)
T ss_pred             CCCCceEEEEEEEeccccccCCeeEEEEeeecHHHHHHHHHHHHhhccccceEEEEEcCchhhhhccceeeeeeEEEEec
Confidence            3567999999999999999874333110                   0000000    00      0000000 011112


Q ss_pred             EEEEEEEeCCCccccccccccCcCCCcEEEEEEeCCCch---hHHHH-HHHHHHHHhhhCCCCCEEEEeeCCcccCCccc
Q 036449           53 TVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKA---SYENV-SKKWIPELKHYAPGVPIILVGTKLDLRDDKQF  128 (197)
Q Consensus        53 ~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~---s~~~~-~~~~~~~i~~~~~~~~~ivv~nK~D~~~~~~~  128 (197)
                      .-.+++.|.||+..|......-..++|..++|+.+...+   .|+.- ...-...+.+...-...|+++||+|-...+- 
T Consensus       156 ~~~ftiLDApGHk~fv~nmI~GasqAD~~vLvisar~gefetgFerGgQTREha~Lakt~gv~~lVv~vNKMddPtvnW-  234 (501)
T KOG0459|consen  156 NKRFTILDAPGHKSFVPNMIGGASQADLAVLVISARKGEFETGFEKGGQTREHAMLAKTAGVKHLIVLINKMDDPTVNW-  234 (501)
T ss_pred             ceeEEeeccCcccccchhhccccchhhhhhhhhhhhhchhhcccccccchhHHHHHHHhhccceEEEEEEeccCCccCc-
Confidence            346789999999988887777788899999999884331   12221 0111222333333467899999999764320 


Q ss_pred             ccCCCCCCcccHHHHHHHHHHhCC-----CceEEeccCCCCCHHHHHH
Q 036449          129 FIDHPGAVPISTAQGEELRKLIGA-----PAYIECSSKTQQNVKAVFD  171 (197)
Q Consensus       129 ~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~sa~~~~~i~~l~~  171 (197)
                        + ...+....+....|.+..+.     ..|+++|..+|.++++...
T Consensus       235 --s-~eRy~E~~~k~~~fLr~~g~n~~~d~~f~p~sg~tG~~~k~~~~  279 (501)
T KOG0459|consen  235 --S-NERYEECKEKLQPFLRKLGFNPKPDKHFVPVSGLTGANVKDRTD  279 (501)
T ss_pred             --c-hhhHHHHHHHHHHHHHHhcccCCCCceeeecccccccchhhccc
Confidence              0 00111122333444443332     2589999999999887654

>KOG2485 consensus Conserved ATP/GTP binding protein [General function prediction only]

Probab=97.90  E-value=1.4e-05  Score=59.18  Aligned_cols=60  Identities=18%  Similarity=0.170  Sum_probs=36.1

Q ss_pred             CceeEEEEEcCCCCCHHHHHHHHhhCCCCCCCCCceeeeee------EEEEECCeEEEEEEEeCCCc
Q 036449            4 SRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFS------ANVVVNGSTVNLGLWDTAGQ   64 (197)
Q Consensus         4 ~~~~~i~v~G~~~~GKstli~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~i~D~~G~   64 (197)
                      ...++++|+|-||+|||||++++........-...++..-.      ..+.+..+ -.+.+.||||.
T Consensus       141 ~~~~~vmVvGvPNVGKSsLINa~r~~~Lrk~k~a~vG~~pGVT~~V~~~iri~~r-p~vy~iDTPGi  206 (335)
T KOG2485|consen  141 NSEYNVMVVGVPNVGKSSLINALRNVHLRKKKAARVGAEPGVTRRVSERIRISHR-PPVYLIDTPGI  206 (335)
T ss_pred             CCceeEEEEcCCCCChHHHHHHHHHHHhhhccceeccCCCCceeeehhheEeccC-CceEEecCCCc
Confidence            35689999999999999999887654332221111121111      11223222 23679999994

>TIGR01425 SRP54_euk signal recognition particle protein SRP54

Probab=97.90  E-value=3.7e-05  Score=60.29  Aligned_cols=67  Identities=16%  Similarity=0.090  Sum_probs=38.5

Q ss_pred             EEEEEEEeCCCccccc-----ccccc-CcCCCcEEEEEEeCCCchhHHHHHHHHHHHHhhhCCCCCEEEEeeCCcccCC
Q 036449           53 TVNLGLWDTAGQEDYN-----RLRPL-SYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLRDD  125 (197)
Q Consensus        53 ~~~~~i~D~~G~~~~~-----~~~~~-~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~~~ivv~nK~D~~~~  125 (197)
                      .+.+.|+||||.....     .+... ...+++-+++|.|.+-++.-...    ...+...  -.+--+|.||.|....
T Consensus       182 ~~DvViIDTaGr~~~d~~lm~El~~i~~~~~p~e~lLVlda~~Gq~a~~~----a~~F~~~--~~~~g~IlTKlD~~ar  254 (429)
T TIGR01425       182 NFDIIIVDTSGRHKQEDSLFEEMLQVAEAIQPDNIIFVMDGSIGQAAEAQ----AKAFKDS--VDVGSVIITKLDGHAK  254 (429)
T ss_pred             CCCEEEEECCCCCcchHHHHHHHHHHhhhcCCcEEEEEeccccChhHHHH----HHHHHhc--cCCcEEEEECccCCCC
Confidence            3567899999943221     11110 12357889999998766433222    2233222  2356788999997543

This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.

>KOG1533 consensus Predicted GTPase [General function prediction only]

Probab=97.82  E-value=1.5e-05  Score=56.75  Aligned_cols=120  Identities=13%  Similarity=0.061  Sum_probs=66.0

Q ss_pred             EEEEEEeCCCccccccccc------cCcCCCcEEEEE---EeC---CCchhHHHHHHHHHHHHhhhC-CCCCEEEEeeCC
Q 036449           54 VNLGLWDTAGQEDYNRLRP------LSYRGADVFILA---FSL---ISKASYENVSKKWIPELKHYA-PGVPIILVGTKL  120 (197)
Q Consensus        54 ~~~~i~D~~G~~~~~~~~~------~~~~~~~~~i~v---~d~---~~~~s~~~~~~~~~~~i~~~~-~~~~~ivv~nK~  120 (197)
                      -...++|+|||-++-..+.      ..++..+.=+.+   +|.   +++.+|-..   ++..+.... =..|-+=|..|+
T Consensus        97 ~~Y~lFDcPGQVELft~h~~l~~I~~~Lek~~~rl~~V~LiDs~ycs~p~~~iS~---lL~sl~tMl~melphVNvlSK~  173 (290)
T KOG1533|consen   97 DHYVLFDCPGQVELFTHHDSLNKIFRKLEKLDYRLVAVNLIDSHYCSDPSKFISS---LLVSLATMLHMELPHVNVLSKA  173 (290)
T ss_pred             CcEEEEeCCCcEEEEeccchHHHHHHHHHHcCceEEEEEeeeceeeCChHHHHHH---HHHHHHHHHhhcccchhhhhHh
Confidence            3466999999865432111      122334433333   333   456555443   222222221 257888889999


Q ss_pred             cccCCcccc-------------------cCCCC---CCcccHHHHHHHHHHhCCCceEEeccCCCCCHHHHHHHHHHH
Q 036449          121 DLRDDKQFF-------------------IDHPG---AVPISTAQGEELRKLIGAPAYIECSSKTQQNVKAVFDAAIRV  176 (197)
Q Consensus       121 D~~~~~~~~-------------------~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~l~~~i~~~  176 (197)
                      |+...-...                   .+...   ...-..+..-.+.+.++.+.|..++-.+.+++-.+...|.++
T Consensus       174 Dl~~~ygkl~f~ld~yt~v~Dl~yL~~~ld~dp~~~kYrkLne~ic~~IeD~~LVSF~~L~v~nkeSml~l~~~IDkA  251 (290)
T KOG1533|consen  174 DLLKKYGKLPFNLDFYTEVQDLSYLEDLLDVDPRLRKYRKLNEAICELIEDFNLVSFEVLDVDNKESMLRLQQTIDKA  251 (290)
T ss_pred             HHHHhhcccccccchhhhhhhHHHHHHHhccChhhhHHHHHHHHHHHHHhccCceeeEEeeccCHHHHHHHHHHHHhc
Confidence            986543311                   00111   112233455667777888778778888778888888777664

>COG3523 IcmF Type VI protein secretion system component VasK [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.79  E-value=3e-05  Score=67.30  Aligned_cols=112  Identities=21%  Similarity=0.162  Sum_probs=58.4

Q ss_pred             EEEEcCCCCCHHHHHHHHh-hCCCCCCC--CC--ceeeeeeEEEEECCeEEEEEEEeCCCcc--------ccccccccC-
Q 036449            9 CVTVGDGAVGKTCLLISYT-SNTFPTDY--VP--TVFDNFSANVVVNGSTVNLGLWDTAGQE--------DYNRLRPLS-   74 (197)
Q Consensus         9 i~v~G~~~~GKstli~~~~-~~~~~~~~--~~--~~~~~~~~~~~~~~~~~~~~i~D~~G~~--------~~~~~~~~~-   74 (197)
                      -+|||++|+||||++..-- .-.+....  ..  ..+..... -.+.+.   -.++||.|-.        .-...|..+ 
T Consensus       128 y~viG~pgsGKTtal~~sgl~Fpl~~~~~~~~~~~~gT~~cd-wwf~de---aVlIDtaGry~~q~s~~~~~~~~W~~fL  203 (1188)
T COG3523         128 YMVIGPPGSGKTTALLNSGLQFPLAEQMGALGLAGPGTRNCD-WWFTDE---AVLIDTAGRYITQDSADEVDRAEWLGFL  203 (1188)
T ss_pred             eEEecCCCCCcchHHhcccccCcchhhhccccccCCCCcccC-cccccc---eEEEcCCcceecccCcchhhHHHHHHHH
Confidence            4899999999999993221 11111110  00  01111111 112222   2378888821        112333322 


Q ss_pred             --------cCCCcEEEEEEeCCCchh-----HHHHHHHH---HHHHhhhC-CCCCEEEEeeCCcccC
Q 036449           75 --------YRGADVFILAFSLISKAS-----YENVSKKW---IPELKHYA-PGVPIILVGTKLDLRD  124 (197)
Q Consensus        75 --------~~~~~~~i~v~d~~~~~s-----~~~~~~~~---~~~i~~~~-~~~~~ivv~nK~D~~~  124 (197)
                              .+..+++|+.+|+.+-.+     .+.....+   +.++.... -..|+++++||.|+.+
T Consensus       204 ~lLkk~R~~~piNGiiltlsv~~L~~~~~~~~~~~~~~LR~RL~El~~tL~~~~PVYl~lTk~Dll~  270 (1188)
T COG3523         204 GLLKKYRRRRPLNGIILTLSVSDLLTADPAEREALARTLRARLQELRETLHARLPVYLVLTKADLLP  270 (1188)
T ss_pred             HHHHHhccCCCCceEEEEEEHHHHcCCCHHHHHHHHHHHHHHHHHHHHhhccCCceEEEEecccccc
Confidence                    345789999999964211     11111222   33333333 4799999999999976

>KOG0465 consensus Mitochondrial elongation factor [Translation, ribosomal structure and biogenesis]

Probab=97.74  E-value=5.2e-05  Score=60.83  Aligned_cols=112  Identities=19%  Similarity=0.156  Sum_probs=73.4

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhhCCCC-----C-CCCCceee----------e---eeEEEEECCeEEEEEEEeCCCcccc
Q 036449            7 IKCVTVGDGAVGKTCLLISYTSNTFP-----T-DYVPTVFD----------N---FSANVVVNGSTVNLGLWDTAGQEDY   67 (197)
Q Consensus         7 ~~i~v~G~~~~GKstli~~~~~~~~~-----~-~~~~~~~~----------~---~~~~~~~~~~~~~~~i~D~~G~~~~   67 (197)
                      =+|-++-+-.+||||+-.+.+....-     . ....++.+          .   -...+.+.  .+.+.++|||||-+|
T Consensus        40 RNIgi~AhidsgKTT~tEr~Lyy~G~~~~i~ev~~~~a~md~m~~er~rgITiqSAAt~~~w~--~~~iNiIDTPGHvDF  117 (721)
T KOG0465|consen   40 RNIGISAHIDAGKTTLTERMLYYTGRIKHIGEVRGGGATMDSMELERQRGITIQSAATYFTWR--DYRINIIDTPGHVDF  117 (721)
T ss_pred             cccceEEEEecCCceeeheeeeecceeeeccccccCceeeehHHHHHhcCceeeeceeeeeec--cceeEEecCCCceeE
Confidence            45677777899999999887642210     0 00011100          0   01112223  577889999999999


Q ss_pred             ccccccCcCCCcEEEEEEeCCCchhHHHHHHHHHHHHhhhCCCCCEEEEeeCCcccC
Q 036449           68 NRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLRD  124 (197)
Q Consensus        68 ~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~~~ivv~nK~D~~~  124 (197)
                      .-.....++--|++++|+|...+-.-+.. .-|.+ +.++  +.|.+.+.||+|...
T Consensus       118 T~EVeRALrVlDGaVlvl~aV~GVqsQt~-tV~rQ-~~ry--~vP~i~FiNKmDRmG  170 (721)
T KOG0465|consen  118 TFEVERALRVLDGAVLVLDAVAGVESQTE-TVWRQ-MKRY--NVPRICFINKMDRMG  170 (721)
T ss_pred             EEEehhhhhhccCeEEEEEcccceehhhH-HHHHH-HHhc--CCCeEEEEehhhhcC
Confidence            88888888999999999998766444433 34433 3334  799999999999753

>cd02038 FleN-like FleN is a member of the Fer4_NifH superfamily

Probab=97.70  E-value=0.00017  Score=48.05  Aligned_cols=106  Identities=17%  Similarity=0.079  Sum_probs=59.1

Q ss_pred             EEEcCCCCCHHHHHHHHhhCCCCCCCCCce-eeeeeEEEEECCeEEEEEEEeCCCccccccccccCcCCCcEEEEEEeCC
Q 036449           10 VTVGDGAVGKTCLLISYTSNTFPTDYVPTV-FDNFSANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLI   88 (197)
Q Consensus        10 ~v~G~~~~GKstli~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~   88 (197)
                      +.-|..|+|||++...+...-.... ..+. .+...   ....-.+.+.++|+|+...  ......+..+|.++++.+.+
T Consensus         4 ~~~~kgg~gkt~~~~~~a~~~~~~~-~~~~~vd~D~---~~~~~~yd~VIiD~p~~~~--~~~~~~l~~aD~vviv~~~~   77 (139)
T cd02038           4 VTSGKGGVGKTNISANLALALAKLG-KRVLLLDADL---GLANLDYDYIIIDTGAGIS--DNVLDFFLAADEVIVVTTPE   77 (139)
T ss_pred             EEcCCCCCcHHHHHHHHHHHHHHCC-CcEEEEECCC---CCCCCCCCEEEEECCCCCC--HHHHHHHHhCCeEEEEcCCC
Confidence            3457889999998744332110010 0000 00000   0000115677999998532  22335678899999999875


Q ss_pred             CchhHHHHHHHHHHHHhhhCCCCCEEEEeeCCccc
Q 036449           89 SKASYENVSKKWIPELKHYAPGVPIILVGTKLDLR  123 (197)
Q Consensus        89 ~~~s~~~~~~~~~~~i~~~~~~~~~ivv~nK~D~~  123 (197)
                       ..++... ...++.+.......++.+|.|+.+..
T Consensus        78 -~~s~~~~-~~~l~~l~~~~~~~~~~lVvN~~~~~  110 (139)
T cd02038          78 -PTSITDA-YALIKKLAKQLRVLNFRVVVNRAESP  110 (139)
T ss_pred             -hhHHHHH-HHHHHHHHHhcCCCCEEEEEeCCCCH
Confidence             4444443 34455555444456788999999753

It shares the common function as an ATPase, with the ATP-binding domain at the N-terminus. In Pseudomonas aeruginosa, FleN gene is involved in regulating the number of flagella and chemotactic motility by influencing FleQ activity.

>KOG1424 consensus Predicted GTP-binding protein MMR1 [General function prediction only]

Probab=97.68  E-value=6e-05  Score=59.35  Aligned_cols=55  Identities=16%  Similarity=0.140  Sum_probs=36.6

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHhhCCCCCCCCCceeee-eeEEEEECCeEEEEEEEeCCCc
Q 036449            6 FIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDN-FSANVVVNGSTVNLGLWDTAGQ   64 (197)
Q Consensus         6 ~~~i~v~G~~~~GKstli~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~i~D~~G~   64 (197)
                      .+.|.+||-|+|||||+||+|.+.+-..- ..|.+-+ .-.++.++.   .+.+.||||.
T Consensus       314 ~vtVG~VGYPNVGKSSTINaLvG~KkVsV-S~TPGkTKHFQTi~ls~---~v~LCDCPGL  369 (562)
T KOG1424|consen  314 VVTVGFVGYPNVGKSSTINALVGRKKVSV-SSTPGKTKHFQTIFLSP---SVCLCDCPGL  369 (562)
T ss_pred             eeEEEeecCCCCchhHHHHHHhcCceeee-ecCCCCcceeEEEEcCC---CceecCCCCc
Confidence            58999999999999999999998875432 1222211 122233332   2458999994

>PRK11537 putative GTP-binding protein YjiA; Provisional

Probab=97.65  E-value=0.0022  Score=48.87  Aligned_cols=25  Identities=24%  Similarity=0.174  Sum_probs=20.8

Q ss_pred             ceeEEEEEcCCCCCHHHHHHHHhhC
Q 036449            5 RFIKCVTVGDGAVGKTCLLISYTSN   29 (197)
Q Consensus         5 ~~~~i~v~G~~~~GKstli~~~~~~   29 (197)
                      +..-.++.|.-|+|||||+++++..
T Consensus         3 ~ipv~iltGFLGaGKTTll~~ll~~   27 (318)
T PRK11537          3 PIAVTLLTGFLGAGKTTLLRHILNE   27 (318)
T ss_pred             ccCEEEEEECCCCCHHHHHHHHHhc
Confidence            3455788899999999999999854

>COG0523 Putative GTPases (G3E family) [General function prediction only]

Probab=97.65  E-value=0.005  Score=46.91  Aligned_cols=77  Identities=16%  Similarity=0.092  Sum_probs=43.0

Q ss_pred             CCcEEEEEEeCCCchhHHH-HHHHHHHHHhhhCCCCCEEEEeeCCcccCCcccccCCCCCCcccHHHHHHHHHHhC-CCc
Q 036449           77 GADVFILAFSLISKASYEN-VSKKWIPELKHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPISTAQGEELRKLIG-APA  154 (197)
Q Consensus        77 ~~~~~i~v~d~~~~~s~~~-~~~~~~~~i~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~  154 (197)
                      ..|+++-|+|..+...... .......++...     =+|++||.|+.....            .+..+...++.+ ..+
T Consensus       116 ~ld~vvtvVDa~~~~~~~~~~~~~~~~Qia~A-----D~ivlNK~Dlv~~~~------------l~~l~~~l~~lnp~A~  178 (323)
T COG0523         116 RLDGVVTVVDAAHFLEGLDAIAELAEDQLAFA-----DVIVLNKTDLVDAEE------------LEALEARLRKLNPRAR  178 (323)
T ss_pred             eeceEEEEEeHHHhhhhHHHHHHHHHHHHHhC-----cEEEEecccCCCHHH------------HHHHHHHHHHhCCCCe
Confidence            3578999999877654333 323444444422     378899999976431            233334444443 335


Q ss_pred             eEEeccCCCCCHHHHHH
Q 036449          155 YIECSSKTQQNVKAVFD  171 (197)
Q Consensus       155 ~~~~sa~~~~~i~~l~~  171 (197)
                      ++.++.. +....+++.
T Consensus       179 i~~~~~~-~~~~~~ll~  194 (323)
T COG0523         179 IIETSYG-DVDLAELLD  194 (323)
T ss_pred             EEEcccc-CCCHHHhhc
Confidence            6777763 444444433

>TIGR00235 udk uridine kinase

Probab=97.63  E-value=7.3e-05  Score=53.36  Aligned_cols=29  Identities=21%  Similarity=0.127  Sum_probs=25.6

Q ss_pred             CCCCceeEEEEEcCCCCCHHHHHHHHhhC
Q 036449            1 MSASRFIKCVTVGDGAVGKTCLLISYTSN   29 (197)
Q Consensus         1 m~~~~~~~i~v~G~~~~GKstli~~~~~~   29 (197)
                      |-+++..-|+++|++|+|||||++.+...
T Consensus         1 ~~~~~g~vi~I~G~sGsGKSTl~~~l~~~   29 (207)
T TIGR00235         1 MDKPKGIIIGIGGGSGSGKTTVARKIYEQ   29 (207)
T ss_pred             CCCCCeEEEEEECCCCCCHHHHHHHHHHH
Confidence            67788889999999999999999888753

Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below

>PRK08118 topology modulation protein; Reviewed

Probab=97.63  E-value=5.4e-05  Score=52.11  Aligned_cols=23  Identities=26%  Similarity=0.427  Sum_probs=20.2

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhhC
Q 036449            7 IKCVTVGDGAVGKTCLLISYTSN   29 (197)
Q Consensus         7 ~~i~v~G~~~~GKstli~~~~~~   29 (197)
                      -+|+|+|++|||||||.+.+...
T Consensus         2 ~rI~I~G~~GsGKSTlak~L~~~   24 (167)
T PRK08118          2 KKIILIGSGGSGKSTLARQLGEK   24 (167)
T ss_pred             cEEEEECCCCCCHHHHHHHHHHH
Confidence            38999999999999999888754

>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A

Probab=97.62  E-value=5.7e-05  Score=48.95  Aligned_cols=22  Identities=18%  Similarity=0.234  Sum_probs=19.7

Q ss_pred             EEEEEcCCCCCHHHHHHHHhhC
Q 036449            8 KCVTVGDGAVGKTCLLISYTSN   29 (197)
Q Consensus         8 ~i~v~G~~~~GKstli~~~~~~   29 (197)
                      .|+|.|++||||||+.+.+...
T Consensus         1 vI~I~G~~gsGKST~a~~La~~   22 (121)
T PF13207_consen    1 VIIISGPPGSGKSTLAKELAER   22 (121)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHH
T ss_pred             CEEEECCCCCCHHHHHHHHHHH
Confidence            4899999999999999988764

...

>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]

Probab=97.61  E-value=5.8e-05  Score=52.42  Aligned_cols=23  Identities=17%  Similarity=0.365  Sum_probs=21.1

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhhC
Q 036449            7 IKCVTVGDGAVGKTCLLISYTSN   29 (197)
Q Consensus         7 ~~i~v~G~~~~GKstli~~~~~~   29 (197)
                      .||+++|+|||||||+..++...
T Consensus         1 ~riiilG~pGaGK~T~A~~La~~   23 (178)
T COG0563           1 MRILILGPPGAGKSTLAKKLAKK   23 (178)
T ss_pred             CeEEEECCCCCCHHHHHHHHHHH
Confidence            48999999999999999998876

>PRK07261 topology modulation protein; Provisional

Probab=97.58  E-value=6.6e-05  Score=51.90  Aligned_cols=23  Identities=22%  Similarity=0.365  Sum_probs=20.1

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhhC
Q 036449            7 IKCVTVGDGAVGKTCLLISYTSN   29 (197)
Q Consensus         7 ~~i~v~G~~~~GKstli~~~~~~   29 (197)
                      .+|+|+|++|+|||||.+.+...
T Consensus         1 ~ri~i~G~~GsGKSTla~~l~~~   23 (171)
T PRK07261          1 MKIAIIGYSGSGKSTLARKLSQH   23 (171)
T ss_pred             CEEEEEcCCCCCHHHHHHHHHHH
Confidence            37999999999999999887643

>PF13555 AAA_29: P-loop containing region of AAA domain

Probab=97.58  E-value=8.4e-05  Score=41.89  Aligned_cols=21  Identities=24%  Similarity=0.346  Sum_probs=18.3

Q ss_pred             EEEEEcCCCCCHHHHHHHHhh
Q 036449            8 KCVTVGDGAVGKTCLLISYTS   28 (197)
Q Consensus         8 ~i~v~G~~~~GKstli~~~~~   28 (197)
                      ..++.|+.|+|||||+.++.-
T Consensus        25 ~tli~G~nGsGKSTllDAi~~   45 (62)
T PF13555_consen   25 VTLITGPNGSGKSTLLDAIQT   45 (62)
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            489999999999999987753

>PRK10751 molybdopterin-guanine dinucleotide biosynthesis protein B; Provisional

Probab=97.57  E-value=9.3e-05  Score=50.99  Aligned_cols=29  Identities=21%  Similarity=0.146  Sum_probs=25.1

Q ss_pred             CCCCceeEEEEEcCCCCCHHHHHHHHhhC
Q 036449            1 MSASRFIKCVTVGDGAVGKTCLLISYTSN   29 (197)
Q Consensus         1 m~~~~~~~i~v~G~~~~GKstli~~~~~~   29 (197)
                      |......-+.++|.+|||||||+.++...
T Consensus         1 ~~~~~~~ii~ivG~sgsGKTTLi~~li~~   29 (173)
T PRK10751          1 MNKTMIPLLAIAAWSGTGKTTLLKKLIPA   29 (173)
T ss_pred             CCCCCceEEEEECCCCChHHHHHHHHHHH
Confidence            66667778999999999999999988864

>PRK10867 signal recognition particle protein; Provisional

Probab=97.56  E-value=0.0007  Score=53.49  Aligned_cols=22  Identities=23%  Similarity=0.054  Sum_probs=17.8

Q ss_pred             ceeEEEEEcCCCCCHHHHHHHH
Q 036449            5 RFIKCVTVGDGAVGKTCLLISY   26 (197)
Q Consensus         5 ~~~~i~v~G~~~~GKstli~~~   26 (197)
                      +..-|+++|++|+||||.+..+
T Consensus        99 ~p~vI~~vG~~GsGKTTtaakL  120 (433)
T PRK10867         99 PPTVIMMVGLQGAGKTTTAGKL  120 (433)
T ss_pred             CCEEEEEECCCCCcHHHHHHHH
Confidence            3567999999999999977443

>PRK14737 gmk guanylate kinase; Provisional

Probab=97.56  E-value=0.00011  Score=51.58  Aligned_cols=23  Identities=9%  Similarity=0.105  Sum_probs=20.5

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhhC
Q 036449            7 IKCVTVGDGAVGKTCLLISYTSN   29 (197)
Q Consensus         7 ~~i~v~G~~~~GKstli~~~~~~   29 (197)
                      .=|+++|++|||||||++++...
T Consensus         5 ~~ivl~GpsG~GK~tl~~~l~~~   27 (186)
T PRK14737          5 KLFIISSVAGGGKSTIIQALLEE   27 (186)
T ss_pred             eEEEEECCCCCCHHHHHHHHHhc
Confidence            44899999999999999999865

>KOG2484 consensus GTPase [General function prediction only]

Probab=97.53  E-value=0.00011  Score=56.18  Aligned_cols=57  Identities=23%  Similarity=0.289  Sum_probs=37.6

Q ss_pred             CceeEEEEEcCCCCCHHHHHHHHhhCCCC-CCCCCceeeeeeEEEEECCeEEEEEEEeCCCc
Q 036449            4 SRFIKCVTVGDGAVGKTCLLISYTSNTFP-TDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQ   64 (197)
Q Consensus         4 ~~~~~i~v~G~~~~GKstli~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~   64 (197)
                      ++.+++.|+|-+++||||+|+++.....- ....|.. ......+..+.   .+.|.|.||.
T Consensus       250 k~sIrvGViG~PNVGKSSvINsL~~~k~C~vg~~pGv-T~smqeV~Ldk---~i~llDsPgi  307 (435)
T KOG2484|consen  250 KTSIRVGIIGYPNVGKSSVINSLKRRKACNVGNVPGV-TRSMQEVKLDK---KIRLLDSPGI  307 (435)
T ss_pred             CcceEeeeecCCCCChhHHHHHHHHhccccCCCCccc-hhhhhheeccC---CceeccCCce
Confidence            46799999999999999999999976652 1112221 12222333332   4669999994

>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold

Probab=97.51  E-value=0.00054  Score=45.38  Aligned_cols=26  Identities=23%  Similarity=0.236  Sum_probs=21.9

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHhhCCC
Q 036449            6 FIKCVTVGDGAVGKTCLLISYTSNTF   31 (197)
Q Consensus         6 ~~~i~v~G~~~~GKstli~~~~~~~~   31 (197)
                      .-.+++.|++|+|||++++.+.....
T Consensus        19 ~~~v~i~G~~G~GKT~l~~~i~~~~~   44 (151)
T cd00009          19 PKNLLLYGPPGTGKTTLARAIANELF   44 (151)
T ss_pred             CCeEEEECCCCCCHHHHHHHHHHHhh
Confidence            35699999999999999988887543

The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.

>PRK14738 gmk guanylate kinase; Provisional

Probab=97.50  E-value=0.00016  Score=51.54  Aligned_cols=25  Identities=24%  Similarity=0.359  Sum_probs=21.2

Q ss_pred             ceeEEEEEcCCCCCHHHHHHHHhhC
Q 036449            5 RFIKCVTVGDGAVGKTCLLISYTSN   29 (197)
Q Consensus         5 ~~~~i~v~G~~~~GKstli~~~~~~   29 (197)
                      +..-|+++|++|+|||||++.+...
T Consensus        12 ~~~~ivi~GpsG~GK~tl~~~L~~~   36 (206)
T PRK14738         12 KPLLVVISGPSGVGKDAVLARMRER   36 (206)
T ss_pred             CCeEEEEECcCCCCHHHHHHHHHhc
Confidence            4466889999999999999998754

>PRK12727 flagellar biosynthesis regulator FlhF; Provisional

Probab=97.50  E-value=0.00071  Score=54.44  Aligned_cols=21  Identities=24%  Similarity=0.216  Sum_probs=18.2

Q ss_pred             eEEEEEcCCCCCHHHHHHHHh
Q 036449            7 IKCVTVGDGAVGKTCLLISYT   27 (197)
Q Consensus         7 ~~i~v~G~~~~GKstli~~~~   27 (197)
                      -.|+++|+.|+||||++..|.
T Consensus       351 ~vIaLVGPtGvGKTTtaakLA  371 (559)
T PRK12727        351 GVIALVGPTGAGKTTTIAKLA  371 (559)
T ss_pred             CEEEEECCCCCCHHHHHHHHH
Confidence            468999999999999997665

>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B

Probab=97.48  E-value=9.4e-05  Score=49.36  Aligned_cols=21  Identities=19%  Similarity=0.268  Sum_probs=18.9

Q ss_pred             EEEEcCCCCCHHHHHHHHhhC
Q 036449            9 CVTVGDGAVGKTCLLISYTSN   29 (197)
Q Consensus         9 i~v~G~~~~GKstli~~~~~~   29 (197)
                      |+++|++||||||+++.+...
T Consensus         2 ii~~G~pgsGKSt~a~~l~~~   22 (143)
T PF13671_consen    2 IILCGPPGSGKSTLAKRLAKR   22 (143)
T ss_dssp             EEEEESTTSSHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHH
Confidence            789999999999999998743

...

>PRK00771 signal recognition particle protein Srp54; Provisional

Probab=97.48  E-value=0.00033  Score=55.36  Aligned_cols=23  Identities=22%  Similarity=0.147  Sum_probs=19.1

Q ss_pred             ceeEEEEEcCCCCCHHHHHHHHh
Q 036449            5 RFIKCVTVGDGAVGKTCLLISYT   27 (197)
Q Consensus         5 ~~~~i~v~G~~~~GKstli~~~~   27 (197)
                      +...|+++|.+|+||||.+..+.
T Consensus        94 ~p~vI~lvG~~GsGKTTtaakLA  116 (437)
T PRK00771         94 KPQTIMLVGLQGSGKTTTAAKLA  116 (437)
T ss_pred             CCeEEEEECCCCCcHHHHHHHHH
Confidence            35679999999999999996553

>COG0194 Gmk Guanylate kinase [Nucleotide transport and metabolism]

Probab=97.47  E-value=0.00012  Score=50.48  Aligned_cols=26  Identities=23%  Similarity=0.323  Sum_probs=22.2

Q ss_pred             ceeEEEEEcCCCCCHHHHHHHHhhCC
Q 036449            5 RFIKCVTVGDGAVGKTCLLISYTSNT   30 (197)
Q Consensus         5 ~~~~i~v~G~~~~GKstli~~~~~~~   30 (197)
                      +-.-+++.|++|+|||||++.++...
T Consensus         3 ~G~l~vlsgPSG~GKsTl~k~L~~~~   28 (191)
T COG0194           3 KGLLIVLSGPSGVGKSTLVKALLEDD   28 (191)
T ss_pred             CceEEEEECCCCCCHHHHHHHHHhhc
Confidence            34568999999999999999998765

>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]

Probab=97.45  E-value=0.00016  Score=51.17  Aligned_cols=23  Identities=26%  Similarity=0.354  Sum_probs=20.1

Q ss_pred             EEEEEcCCCCCHHHHHHHHhhCC
Q 036449            8 KCVTVGDGAVGKTCLLISYTSNT   30 (197)
Q Consensus         8 ~i~v~G~~~~GKstli~~~~~~~   30 (197)
                      .++++|++|||||||++-+..-.
T Consensus        30 vv~iiGpSGSGKSTlLRclN~LE   52 (240)
T COG1126          30 VVVIIGPSGSGKSTLLRCLNGLE   52 (240)
T ss_pred             EEEEECCCCCCHHHHHHHHHCCc
Confidence            48999999999999998887654

>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]

Probab=97.44  E-value=0.00031  Score=54.29  Aligned_cols=20  Identities=35%  Similarity=0.376  Sum_probs=16.8

Q ss_pred             EEEEEcCCCCCHHHHHHHHh
Q 036449            8 KCVTVGDGAVGKTCLLISYT   27 (197)
Q Consensus         8 ~i~v~G~~~~GKstli~~~~   27 (197)
                      .|+++|+.||||||-+.+|-
T Consensus       205 vi~LVGPTGVGKTTTlAKLA  224 (407)
T COG1419         205 VIALVGPTGVGKTTTLAKLA  224 (407)
T ss_pred             EEEEECCCCCcHHHHHHHHH
Confidence            58999999999999885543

>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]

Probab=97.43  E-value=0.00012  Score=52.44  Aligned_cols=21  Identities=29%  Similarity=0.302  Sum_probs=18.6

Q ss_pred             EEEEcCCCCCHHHHHHHHhhC
Q 036449            9 CVTVGDGAVGKTCLLISYTSN   29 (197)
Q Consensus         9 i~v~G~~~~GKstli~~~~~~   29 (197)
                      |+++|++|||||||++-+-.-
T Consensus        34 vaI~GpSGSGKSTLLniig~l   54 (226)
T COG1136          34 VAIVGPSGSGKSTLLNLLGGL   54 (226)
T ss_pred             EEEECCCCCCHHHHHHHHhcc
Confidence            799999999999999877654

>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars

Probab=97.42  E-value=0.00018  Score=41.81  Aligned_cols=21  Identities=14%  Similarity=0.254  Sum_probs=18.8

Q ss_pred             EEEEcCCCCCHHHHHHHHhhC
Q 036449            9 CVTVGDGAVGKTCLLISYTSN   29 (197)
Q Consensus         9 i~v~G~~~~GKstli~~~~~~   29 (197)
                      |++.|++|+||||+.+.+...
T Consensus         2 i~i~G~~gsGKst~~~~l~~~   22 (69)
T cd02019           2 IAITGGSGSGKSTVAKKLAEQ   22 (69)
T ss_pred             EEEECCCCCCHHHHHHHHHHH
Confidence            789999999999999888765

Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.

>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=97.40  E-value=0.00014  Score=52.50  Aligned_cols=21  Identities=24%  Similarity=0.314  Sum_probs=18.8

Q ss_pred             EEEEcCCCCCHHHHHHHHhhC
Q 036449            9 CVTVGDGAVGKTCLLISYTSN   29 (197)
Q Consensus         9 i~v~G~~~~GKstli~~~~~~   29 (197)
                      |+++|++|+|||||++.+-+-
T Consensus        32 vsilGpSGcGKSTLLriiAGL   52 (248)
T COG1116          32 VAILGPSGCGKSTLLRLIAGL   52 (248)
T ss_pred             EEEECCCCCCHHHHHHHHhCC
Confidence            789999999999999887754

>PRK05480 uridine/cytidine kinase; Provisional

Probab=97.40  E-value=0.00021  Score=51.02  Aligned_cols=26  Identities=19%  Similarity=0.171  Sum_probs=22.9

Q ss_pred             CceeEEEEEcCCCCCHHHHHHHHhhC
Q 036449            4 SRFIKCVTVGDGAVGKTCLLISYTSN   29 (197)
Q Consensus         4 ~~~~~i~v~G~~~~GKstli~~~~~~   29 (197)
                      .+...|.+.|++|||||||.+.+...
T Consensus         4 ~~~~iI~I~G~sGsGKTTl~~~l~~~   29 (209)
T PRK05480          4 KKPIIIGIAGGSGSGKTTVASTIYEE   29 (209)
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHHH
Confidence            56789999999999999999887753

>cd01983 Fer4_NifH The Fer4_NifH superfamily contains a variety of proteins which share a common ATP-binding domain

Probab=97.40  E-value=0.0013  Score=40.35  Aligned_cols=69  Identities=23%  Similarity=0.218  Sum_probs=41.8

Q ss_pred             EEEEcCCCCCHHHHHHHHhhCCCCCCCCCceeeeeeEEEEECCeEEEEEEEeCCCccccccc-cccCcCCCcEEEEEEeC
Q 036449            9 CVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQEDYNRL-RPLSYRGADVFILAFSL   87 (197)
Q Consensus         9 i~v~G~~~~GKstli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~-~~~~~~~~~~~i~v~d~   87 (197)
                      +++.|..|+||||+...+...-....+.         ...++    .+.++|+++....... .......+|.++++.+.
T Consensus         2 ~~~~g~~G~Gktt~~~~l~~~l~~~g~~---------v~~~~----d~iivD~~~~~~~~~~~~~~~~~~~~~vi~v~~~   68 (99)
T cd01983           2 IVVTGKGGVGKTTLAANLAAALAKRGKR---------VLLID----DYVLIDTPPGLGLLVLLCLLALLAADLVIIVTTP   68 (99)
T ss_pred             EEEECCCCCCHHHHHHHHHHHHHHCCCe---------EEEEC----CEEEEeCCCCccchhhhhhhhhhhCCEEEEecCC
Confidence            6788999999999996655321111111         11112    4668999986432221 13456678888888886


Q ss_pred             CCc
Q 036449           88 ISK   90 (197)
Q Consensus        88 ~~~   90 (197)
                      ...
T Consensus        69 ~~~   71 (99)
T cd01983          69 EAL   71 (99)
T ss_pred             chh
Confidence            543

Functionally, proteins in this superfamily use the energy from hydrolysis of NTP to transfer electron or ion.

>PF13521 AAA_28: AAA domain; PDB: 1LW7_A

Probab=97.38  E-value=0.00011  Score=50.31  Aligned_cols=22  Identities=27%  Similarity=0.450  Sum_probs=17.6

Q ss_pred             EEEEEcCCCCCHHHHHHHHhhC
Q 036449            8 KCVTVGDGAVGKTCLLISYTSN   29 (197)
Q Consensus         8 ~i~v~G~~~~GKstli~~~~~~   29 (197)
                      ||+|.|.+++|||||++.|...
T Consensus         1 rI~i~G~~stGKTTL~~~L~~~   22 (163)
T PF13521_consen    1 RIVITGGPSTGKTTLIEALAAR   22 (163)
T ss_dssp             -EEEE--TTSHHHHHHHHHHHH
T ss_pred             CEEEECCCCCCHHHHHHHHHHc
Confidence            7999999999999999988865

>PF04665 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 This entry contains uncharacterised proteins belonging to the B354L family which include the pox virus A32 protein

Probab=97.38  E-value=0.00018  Score=52.17  Aligned_cols=25  Identities=28%  Similarity=0.344  Sum_probs=22.0

Q ss_pred             ceeEEEEEcCCCCCHHHHHHHHhhC
Q 036449            5 RFIKCVTVGDGAVGKTCLLISYTSN   29 (197)
Q Consensus         5 ~~~~i~v~G~~~~GKstli~~~~~~   29 (197)
                      ..+|++|+|++|||||+|+..++..
T Consensus        12 ~~fr~viIG~sGSGKT~li~~lL~~   36 (241)
T PF04665_consen   12 DPFRMVIIGKSGSGKTTLIKSLLYY   36 (241)
T ss_pred             CCceEEEECCCCCCHHHHHHHHHHh
Confidence            4589999999999999999888754

This is thought to be an ATPase involved in viral DNA packaging [].

>KOG3929 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.35  E-value=5.7e-05  Score=54.56  Aligned_cols=166  Identities=17%  Similarity=0.206  Sum_probs=88.0

Q ss_pred             CceeEEEEEcCCCCCHHHHHHHHhhCCCCCCCCCceeeeeeEEEEECCe--EEEEEEEeCCCcccccccccc--CcCCCc
Q 036449            4 SRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGS--TVNLGLWDTAGQEDYNRLRPL--SYRGAD   79 (197)
Q Consensus         4 ~~~~~i~v~G~~~~GKstli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~i~D~~G~~~~~~~~~~--~~~~~~   79 (197)
                      +....|.+.|+.+.  |++|++.+...-.. ..|+....|+......+.  .-..++|+.+|......+...  ..++..
T Consensus        43 ~~E~~I~~~Gn~~~--tt~I~~~FdR~e~~-~~ptlaLEYtygRR~~g~~~kdiaN~WELGgg~~~~~LLsVPit~~~l~  119 (363)
T KOG3929|consen   43 KFEFFIGSKGNGGK--TTIILRCFDRDEPP-KPPTLALEYTYGRRAKGHNPKDIANFWELGGGTSLLDLLSVPITGDTLR  119 (363)
T ss_pred             cceeEEEEecCCce--eEeehhhcCcccCC-CCCceeeeeehhhhccCCCchhHHHHHHhcCCccHHHHhcCcccccchh
Confidence            34567888888766  88998888654322 345554444444333332  223569999997654433222  222222


Q ss_pred             --EEEEEEeCCCchhHHHHHHHHHH--------------------------HHhhhC-----------C-CCCEEEEeeC
Q 036449           80 --VFILAFSLISKASYENVSKKWIP--------------------------ELKHYA-----------P-GVPIILVGTK  119 (197)
Q Consensus        80 --~~i~v~d~~~~~s~~~~~~~~~~--------------------------~i~~~~-----------~-~~~~ivv~nK  119 (197)
                        .+|++.|++++..+-......++                          .+..+.           | -+|++||+.|
T Consensus       120 ~~slIL~LDls~p~~~W~t~E~~~~~~R~~vd~~~~~~~k~~~~L~E~mrqR~~~rvgqd~~d~e~~dP~P~PV~IVgsK  199 (363)
T KOG3929|consen  120 TFSLILVLDLSKPNDLWPTMENLLQATRSHVDKVIMKLGKTNAKLVEEMRQRIWNRVGQDHPDHELIDPFPVPVVIVGSK  199 (363)
T ss_pred             hhhheeeeecCChHHHHHHHHHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHhcccCCCchhhcCCCCCceEEeccc
Confidence              67899999987553211111111                          111111           1 3699999999


Q ss_pred             CcccCCcccccCCCCCCcccHHHHHHHHHHhCCCceEEeccCCCCCHHHHHHHHHHHHc
Q 036449          120 LDLRDDKQFFIDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQQNVKAVFDAAIRVVL  178 (197)
Q Consensus       120 ~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~l~~~i~~~~~  178 (197)
                      +|.-..-+     +..+...=...+.++..||. ..+..|++-..-.+.+.+.+.+...
T Consensus       200 YDvFq~Fe-----sekRkH~C~~LRf~Ah~yGa-aLlmfSskMe~l~K~~r~~i~HlaF  252 (363)
T KOG3929|consen  200 YDVFQDFE-----SEKRKHICKTLRFVAHYYGA-ALLMFSSKMEALLKKIRGVINHLAF  252 (363)
T ss_pred             hhhhcccc-----HHHHHHHHHHHHHHHHHhhh-HHHHHHHhhHHHHHHHHhhHHHhhc
Confidence            99865322     11111112334566666776 5666677643333333333333333

>cd02042 ParA ParA and ParB of Caulobacter crescentus belong to a conserved family of bacterial proteins implicated in chromosome segregation

Probab=97.34  E-value=0.00087  Score=42.14  Aligned_cols=82  Identities=12%  Similarity=0.152  Sum_probs=45.7

Q ss_pred             EEEEc-CCCCCHHHHHHHHhhCCCCCCCCCceeeeeeEEEEECCeEEEEEEEeCCCccccccccccCcCCCcEEEEEEeC
Q 036449            9 CVTVG-DGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSL   87 (197)
Q Consensus         9 i~v~G-~~~~GKstli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~   87 (197)
                      |++.| ..|+||||+...+...-.... .++.      .+..+ ..+.+.++|+|+.....  ....+..+|.++++.+.
T Consensus         2 i~~~~~kgG~Gkst~~~~la~~~~~~~-~~vl------~~d~d-~~~d~viiD~p~~~~~~--~~~~l~~ad~viv~~~~   71 (104)
T cd02042           2 IAVANQKGGVGKTTTAVNLAAALARRG-KRVL------LIDLD-PQYDYIIIDTPPSLGLL--TRNALAAADLVLIPVQP   71 (104)
T ss_pred             EEEEeCCCCcCHHHHHHHHHHHHHhCC-CcEE------EEeCC-CCCCEEEEeCcCCCCHH--HHHHHHHCCEEEEeccC
Confidence            56777 568999999855432211111 1111      01111 11567799999864322  22556779999999886


Q ss_pred             CCchhHHHHHHHHHH
Q 036449           88 ISKASYENVSKKWIP  102 (197)
Q Consensus        88 ~~~~s~~~~~~~~~~  102 (197)
                      + ..++... ..+++
T Consensus        72 ~-~~s~~~~-~~~~~   84 (104)
T cd02042          72 S-PLDLDGL-EKLLE   84 (104)
T ss_pred             C-HHHHHHH-HHHHH
Confidence            4 4455555 34444

ParB binds to DNA sequences adjacent to the origin of replication and localizes to opposite cell poles shortly following the initiation of DNA replication. ParB regulates the ParA ATPase activity by promoting nucleotide exchange in a fashion reminiscent of the exchange factors of eukaryotic G proteins. ADP-bound ParA binds single-stranded DNA, whereas the ATP-bound form dissociates ParB from its DNA binding sites. Increasing the fraction of ParA-ADP in the cell inhibits cell division, suggesting that this simple nucleotide switch may regulate cytokinesis. ParA shares sequence similarity to a conserved and widespread family of ATPases which includes the repA protein of the repABC operon in R. etli Sym plasmid. This operon is involved in the plasmid replication and partition.

>PRK06217 hypothetical protein; Validated

Probab=97.33  E-value=0.00021  Score=49.93  Aligned_cols=23  Identities=17%  Similarity=0.254  Sum_probs=20.5

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhhC
Q 036449            7 IKCVTVGDGAVGKTCLLISYTSN   29 (197)
Q Consensus         7 ~~i~v~G~~~~GKstli~~~~~~   29 (197)
                      .+|+|+|.+||||||+.+++...
T Consensus         2 ~~I~i~G~~GsGKSTla~~L~~~   24 (183)
T PRK06217          2 MRIHITGASGSGTTTLGAALAER   24 (183)
T ss_pred             eEEEEECCCCCCHHHHHHHHHHH
Confidence            57999999999999999888754

>cd04178 Nucleostemin_like Nucleostemin-like

Probab=97.32  E-value=0.00076  Score=46.67  Aligned_cols=44  Identities=16%  Similarity=0.135  Sum_probs=29.1

Q ss_pred             cEEEEEEeCCCchhHHHHHHHHHHHHhhhCCCCCEEEEeeCCcccC
Q 036449           79 DVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLRD  124 (197)
Q Consensus        79 ~~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~~~ivv~nK~D~~~  124 (197)
                      |++++|+|+.++.+...  ..+...+.....+.|+++|.||+|+.+
T Consensus         1 DvVl~VvDar~p~~~~~--~~i~~~~~l~~~~kp~IlVlNK~DL~~   44 (172)
T cd04178           1 DVILEVLDARDPLGCRC--PQVEEAVLQAGGNKKLVLVLNKIDLVP   44 (172)
T ss_pred             CEEEEEEECCCCCCCCC--HHHHHHHHhccCCCCEEEEEehhhcCC
Confidence            68999999988744322  133333211123689999999999964

Nucleostemin (NS) is a nucleolar protein that functions as a regulator of cell growth and proliferation in stem cells and in several types of cancer cells, but is not expressed in the differentiated cells of most mammalian adult tissues. NS shuttles between the nucleolus and nucleoplasm bidirectionally at a rate that is fast and independent of cell type. Lowering GTP levels decreases the nucleolar retention of NS, and expression of NS is abruptly down-regulated during differentiation prior to terminal cell division. Found only in eukaryotes, NS consists of an N-terminal basic domain, a coiled-coil domain, a GTP-binding domain, an intermediate domain, and a C-terminal acidic domain. Experimental evidence indicates that NS uses its GTP-binding property as a molecular switch to control the transition between the nucleolus and nucleoplasm, and this process involves interaction between the basic, GTP-binding, and intermediate domains of the

>PRK01889 GTPase RsgA; Reviewed

Probab=97.32  E-value=0.00027  Score=54.67  Aligned_cols=24  Identities=21%  Similarity=0.346  Sum_probs=21.1

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhhCC
Q 036449            7 IKCVTVGDGAVGKTCLLISYTSNT   30 (197)
Q Consensus         7 ~~i~v~G~~~~GKstli~~~~~~~   30 (197)
                      -+++++|.+|+|||||++.+.+..
T Consensus       196 ~~~~lvG~sgvGKStLin~L~g~~  219 (356)
T PRK01889        196 KTVALLGSSGVGKSTLVNALLGEE  219 (356)
T ss_pred             CEEEEECCCCccHHHHHHHHHHhc
Confidence            368999999999999999998643

>PRK14530 adenylate kinase; Provisional

Probab=97.30  E-value=0.00028  Score=50.64  Aligned_cols=21  Identities=14%  Similarity=0.218  Sum_probs=19.0

Q ss_pred             EEEEEcCCCCCHHHHHHHHhh
Q 036449            8 KCVTVGDGAVGKTCLLISYTS   28 (197)
Q Consensus         8 ~i~v~G~~~~GKstli~~~~~   28 (197)
                      +|+++|++||||||+.+.+..
T Consensus         5 ~I~i~G~pGsGKsT~~~~La~   25 (215)
T PRK14530          5 RILLLGAPGAGKGTQSSNLAE   25 (215)
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            799999999999999988753

>KOG2423 consensus Nucleolar GTPase [General function prediction only]

Probab=97.28  E-value=0.00013  Score=55.96  Aligned_cols=59  Identities=17%  Similarity=0.141  Sum_probs=0.0

Q ss_pred             CCCceeEEEEEcCCCCCHHHHHHHHhhCCCCCCCCCceeeeeeEEEEECCeEEEEEEEeCCC
Q 036449            2 SASRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWDTAG   63 (197)
Q Consensus         2 ~~~~~~~i~v~G~~~~GKstli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G   63 (197)
                      +..+.|.|.+||-+++||||+||.|...+.-.- .|-.+++....+..--+.+.  ++||||
T Consensus       303 ~dkkqISVGfiGYPNvGKSSiINTLR~KkVCkv-APIpGETKVWQYItLmkrIf--LIDcPG  361 (572)
T KOG2423|consen  303 SDKKQISVGFIGYPNVGKSSIINTLRKKKVCKV-APIPGETKVWQYITLMKRIF--LIDCPG  361 (572)
T ss_pred             cCccceeeeeecCCCCchHHHHHHHhhcccccc-cCCCCcchHHHHHHHHhcee--EecCCC

>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis

Probab=97.27  E-value=0.00027  Score=44.63  Aligned_cols=20  Identities=30%  Similarity=0.499  Sum_probs=18.2

Q ss_pred             EEEEEcCCCCCHHHHHHHHh
Q 036449            8 KCVTVGDGAVGKTCLLISYT   27 (197)
Q Consensus         8 ~i~v~G~~~~GKstli~~~~   27 (197)
                      .++++|++|+|||||++.+.
T Consensus        17 ~v~I~GpSGsGKSTLl~~l~   36 (107)
T cd00820          17 GVLITGDSGIGKTELALELI   36 (107)
T ss_pred             EEEEEcCCCCCHHHHHHHhh
Confidence            48999999999999998875

It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural

>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems

Probab=97.26  E-value=0.00027  Score=46.79  Aligned_cols=23  Identities=26%  Similarity=0.307  Sum_probs=20.2

Q ss_pred             EEEEEcCCCCCHHHHHHHHhhCC
Q 036449            8 KCVTVGDGAVGKTCLLISYTSNT   30 (197)
Q Consensus         8 ~i~v~G~~~~GKstli~~~~~~~   30 (197)
                      .++++|+.|+|||||++.+.+..
T Consensus        13 ~~~i~G~nGsGKStLl~~l~g~~   35 (137)
T PF00005_consen   13 IVAIVGPNGSGKSTLLKALAGLL   35 (137)
T ss_dssp             EEEEEESTTSSHHHHHHHHTTSS
T ss_pred             EEEEEccCCCccccceeeecccc
Confidence            58999999999999999887753

ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....

>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2

Probab=97.26  E-value=0.00028  Score=46.89  Aligned_cols=21  Identities=33%  Similarity=0.422  Sum_probs=18.9

Q ss_pred             EEEEcCCCCCHHHHHHHHhhC
Q 036449            9 CVTVGDGAVGKTCLLISYTSN   29 (197)
Q Consensus         9 i~v~G~~~~GKstli~~~~~~   29 (197)
                      |+++|++|+|||||++.+...
T Consensus         2 i~i~GpsGsGKstl~~~L~~~   22 (137)
T cd00071           2 IVLSGPSGVGKSTLLKRLLEE   22 (137)
T ss_pred             EEEECCCCCCHHHHHHHHHhc
Confidence            689999999999999998864

7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.

>PF03205 MobB: Molybdopterin guanine dinucleotide synthesis protein B; PDB: 2F1R_B 1P9N_A 1NP6_B 2NPI_A 1XJC_A

Probab=97.24  E-value=0.00031  Score=46.83  Aligned_cols=22  Identities=27%  Similarity=0.323  Sum_probs=19.6

Q ss_pred             EEEEEcCCCCCHHHHHHHHhhC
Q 036449            8 KCVTVGDGAVGKTCLLISYTSN   29 (197)
Q Consensus         8 ~i~v~G~~~~GKstli~~~~~~   29 (197)
                      .|+|+|+.|+|||||+..+.+.
T Consensus         2 vv~VvG~~~sGKTTl~~~Li~~   23 (140)
T PF03205_consen    2 VVQVVGPKNSGKTTLIRKLINE   23 (140)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            6899999999999999888764

>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C

Probab=97.24  E-value=0.00028  Score=45.99  Aligned_cols=21  Identities=19%  Similarity=0.118  Sum_probs=18.8

Q ss_pred             EEEEcCCCCCHHHHHHHHhhC
Q 036449            9 CVTVGDGAVGKTCLLISYTSN   29 (197)
Q Consensus         9 i~v~G~~~~GKstli~~~~~~   29 (197)
                      |++.|.+||||||+.+.|...
T Consensus         1 I~i~G~~GsGKtTia~~L~~~   21 (129)
T PF13238_consen    1 IGISGIPGSGKTTIAKELAER   21 (129)
T ss_dssp             EEEEESTTSSHHHHHHHHHHH
T ss_pred             CEEECCCCCCHHHHHHHHHHH
Confidence            789999999999999887764

...

>PTZ00088 adenylate kinase 1; Provisional

Probab=97.23  E-value=0.00039  Score=50.31  Aligned_cols=28  Identities=25%  Similarity=0.243  Sum_probs=23.1

Q ss_pred             CCCCceeEEEEEcCCCCCHHHHHHHHhh
Q 036449            1 MSASRFIKCVTVGDGAVGKTCLLISYTS   28 (197)
Q Consensus         1 m~~~~~~~i~v~G~~~~GKstli~~~~~   28 (197)
                      |.-...++|+++|++||||||+...+..
T Consensus         1 ~~~~~~mrIvl~G~PGsGK~T~a~~La~   28 (229)
T PTZ00088          1 MKLKGPLKIVLFGAPGVGKGTFAEILSK   28 (229)
T ss_pred             CCCCCCceEEEECCCCCCHHHHHHHHHH
Confidence            3345668999999999999999987764

>PRK14527 adenylate kinase; Provisional

Probab=97.22  E-value=0.00039  Score=48.95  Aligned_cols=28  Identities=14%  Similarity=0.166  Sum_probs=23.9

Q ss_pred             CCCCceeEEEEEcCCCCCHHHHHHHHhh
Q 036449            1 MSASRFIKCVTVGDGAVGKTCLLISYTS   28 (197)
Q Consensus         1 m~~~~~~~i~v~G~~~~GKstli~~~~~   28 (197)
                      |+.++...|+++|++|+||||+...+..
T Consensus         1 ~~~~~~~~i~i~G~pGsGKsT~a~~La~   28 (191)
T PRK14527          1 MTQTKNKVVIFLGPPGAGKGTQAERLAQ   28 (191)
T ss_pred             CCCCCCcEEEEECCCCCCHHHHHHHHHH
Confidence            5666777899999999999999988764

>PRK03839 putative kinase; Provisional

Probab=97.22  E-value=0.00033  Score=48.77  Aligned_cols=22  Identities=23%  Similarity=0.215  Sum_probs=19.4

Q ss_pred             EEEEEcCCCCCHHHHHHHHhhC
Q 036449            8 KCVTVGDGAVGKTCLLISYTSN   29 (197)
Q Consensus         8 ~i~v~G~~~~GKstli~~~~~~   29 (197)
                      +|+++|.+|+||||+.+.+...
T Consensus         2 ~I~l~G~pGsGKsT~~~~La~~   23 (180)
T PRK03839          2 IIAITGTPGVGKTTVSKLLAEK   23 (180)
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            6999999999999999877653

>smart00382 AAA ATPases associated with a variety of cellular activities

Probab=97.21  E-value=0.00037  Score=45.79  Aligned_cols=27  Identities=26%  Similarity=0.233  Sum_probs=22.4

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhhCCCCC
Q 036449            7 IKCVTVGDGAVGKTCLLISYTSNTFPT   33 (197)
Q Consensus         7 ~~i~v~G~~~~GKstli~~~~~~~~~~   33 (197)
                      -.++++|++|+||||++..+...-...
T Consensus         3 ~~~~l~G~~G~GKTtl~~~l~~~~~~~   29 (148)
T smart00382        3 EVILIVGPPGSGKTTLARALARELGPP   29 (148)
T ss_pred             CEEEEECCCCCcHHHHHHHHHhccCCC
Confidence            478999999999999999888765433

AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.

>COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=97.21  E-value=0.0003  Score=50.36  Aligned_cols=21  Identities=29%  Similarity=0.439  Sum_probs=19.1

Q ss_pred             EEEEEcCCCCCHHHHHHHHhh
Q 036449            8 KCVTVGDGAVGKTCLLISYTS   28 (197)
Q Consensus         8 ~i~v~G~~~~GKstli~~~~~   28 (197)
                      -|+++|++|+|||||++.+.+
T Consensus        32 ~VaiIG~SGaGKSTLLR~lng   52 (258)
T COG3638          32 MVAIIGPSGAGKSTLLRSLNG   52 (258)
T ss_pred             EEEEECCCCCcHHHHHHHHhc
Confidence            389999999999999988876

>PRK10078 ribose 1,5-bisphosphokinase; Provisional

Probab=97.21  E-value=0.00035  Score=49.00  Aligned_cols=22  Identities=23%  Similarity=0.286  Sum_probs=19.7

Q ss_pred             EEEEEcCCCCCHHHHHHHHhhC
Q 036449            8 KCVTVGDGAVGKTCLLISYTSN   29 (197)
Q Consensus         8 ~i~v~G~~~~GKstli~~~~~~   29 (197)
                      .|+++|++|+|||||++.+...
T Consensus         4 ~i~l~G~sGsGKsTl~~~l~~~   25 (186)
T PRK10078          4 LIWLMGPSGSGKDSLLAALRQR   25 (186)
T ss_pred             EEEEECCCCCCHHHHHHHHhcc
Confidence            5899999999999999999654

>COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=97.20  E-value=0.0011  Score=46.89  Aligned_cols=21  Identities=24%  Similarity=0.371  Sum_probs=18.1

Q ss_pred             EEEEEcCCCCCHHHHHHHHhh
Q 036449            8 KCVTVGDGAVGKTCLLISYTS   28 (197)
Q Consensus         8 ~i~v~G~~~~GKstli~~~~~   28 (197)
                      -.+++|++|+|||||++.+..
T Consensus        35 VTAlIGPSGcGKST~LR~lNR   55 (253)
T COG1117          35 VTALIGPSGCGKSTLLRCLNR   55 (253)
T ss_pred             eEEEECCCCcCHHHHHHHHHh
Confidence            368999999999999977764

>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional

Probab=97.17  E-value=0.0017  Score=54.63  Aligned_cols=20  Identities=30%  Similarity=0.282  Sum_probs=17.6

Q ss_pred             EEEEEcCCCCCHHHHHHHHh
Q 036449            8 KCVTVGDGAVGKTCLLISYT   27 (197)
Q Consensus         8 ~i~v~G~~~~GKstli~~~~   27 (197)
                      -|+++|+.|+||||.+.++.
T Consensus       187 Vi~lVGpnGvGKTTTiaKLA  206 (767)
T PRK14723        187 VLALVGPTGVGKTTTTAKLA  206 (767)
T ss_pred             EEEEECCCCCcHHHHHHHHH
Confidence            58999999999999996665

>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN

Probab=97.16  E-value=0.00039  Score=48.36  Aligned_cols=22  Identities=27%  Similarity=0.253  Sum_probs=19.4

Q ss_pred             EEEEEcCCCCCHHHHHHHHhhC
Q 036449            8 KCVTVGDGAVGKTCLLISYTSN   29 (197)
Q Consensus         8 ~i~v~G~~~~GKstli~~~~~~   29 (197)
                      .++++|++|||||||++.+...
T Consensus         3 ~~~i~G~sGsGKttl~~~l~~~   24 (179)
T TIGR02322         3 LIYVVGPSGAGKDTLLDYARAR   24 (179)
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            4799999999999999987664

Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.

>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport

Probab=97.14  E-value=0.00045  Score=45.21  Aligned_cols=21  Identities=24%  Similarity=0.238  Sum_probs=19.1

Q ss_pred             EEEEcCCCCCHHHHHHHHhhC
Q 036449            9 CVTVGDGAVGKTCLLISYTSN   29 (197)
Q Consensus         9 i~v~G~~~~GKstli~~~~~~   29 (197)
                      |++.|++|+|||++++.+...
T Consensus         1 ill~G~~G~GKT~l~~~la~~   21 (132)
T PF00004_consen    1 ILLHGPPGTGKTTLARALAQY   21 (132)
T ss_dssp             EEEESSTTSSHHHHHHHHHHH
T ss_pred             CEEECcCCCCeeHHHHHHHhh
Confidence            689999999999999888765

Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....

>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion

Probab=97.13  E-value=0.00048  Score=47.82  Aligned_cols=21  Identities=24%  Similarity=0.267  Sum_probs=18.8

Q ss_pred             eEEEEEcCCCCCHHHHHHHHh
Q 036449            7 IKCVTVGDGAVGKTCLLISYT   27 (197)
Q Consensus         7 ~~i~v~G~~~~GKstli~~~~   27 (197)
                      =.++++|+.|+|||||++.+.
T Consensus        22 ~~~~l~G~nG~GKSTLl~~il   42 (176)
T cd03238          22 VLVVVTGVSGSGKSTLVNEGL   42 (176)
T ss_pred             CEEEEECCCCCCHHHHHHHHh
Confidence            368999999999999998875

Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.

>TIGR03263 guanyl_kin guanylate kinase

Probab=97.12  E-value=0.00045  Score=48.06  Aligned_cols=22  Identities=27%  Similarity=0.368  Sum_probs=19.7

Q ss_pred             EEEEEcCCCCCHHHHHHHHhhC
Q 036449            8 KCVTVGDGAVGKTCLLISYTSN   29 (197)
Q Consensus         8 ~i~v~G~~~~GKstli~~~~~~   29 (197)
                      -|+++|++|+|||||++.+...
T Consensus         3 ii~l~G~~GsGKsTl~~~L~~~   24 (180)
T TIGR03263         3 LIVISGPSGVGKSTLVKALLEE   24 (180)
T ss_pred             EEEEECCCCCCHHHHHHHHHcc
Confidence            4899999999999999998864

Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.

>PRK14532 adenylate kinase; Provisional

Probab=97.09  E-value=0.00053  Score=48.09  Aligned_cols=23  Identities=17%  Similarity=0.215  Sum_probs=20.1

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhhC
Q 036449            7 IKCVTVGDGAVGKTCLLISYTSN   29 (197)
Q Consensus         7 ~~i~v~G~~~~GKstli~~~~~~   29 (197)
                      ++|+++|++||||||+..++...
T Consensus         1 ~~i~~~G~pGsGKsT~a~~la~~   23 (188)
T PRK14532          1 MNLILFGPPAAGKGTQAKRLVEE   23 (188)
T ss_pred             CEEEEECCCCCCHHHHHHHHHHH
Confidence            37999999999999999888653

>KOG0780 consensus Signal recognition particle, subunit Srp54 [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.08  E-value=0.00054  Score=52.49  Aligned_cols=50  Identities=12%  Similarity=0.240  Sum_probs=30.4

Q ss_pred             eEEEEEEEeCCCcc--c---cccccc-cCcCCCcEEEEEEeCCCchhHHHHHHHHH
Q 036449           52 STVNLGLWDTAGQE--D---YNRLRP-LSYRGADVFILAFSLISKASYENVSKKWI  101 (197)
Q Consensus        52 ~~~~~~i~D~~G~~--~---~~~~~~-~~~~~~~~~i~v~d~~~~~s~~~~~~~~~  101 (197)
                      ..+.+.|.||+|-.  +   |..+.. .-.-+.|-+|+|.|.+-.++-+.....+-
T Consensus       182 e~fdvIIvDTSGRh~qe~sLfeEM~~v~~ai~Pd~vi~VmDasiGQaae~Qa~aFk  237 (483)
T KOG0780|consen  182 ENFDVIIVDTSGRHKQEASLFEEMKQVSKAIKPDEIIFVMDASIGQAAEAQARAFK  237 (483)
T ss_pred             cCCcEEEEeCCCchhhhHHHHHHHHHHHhhcCCCeEEEEEeccccHhHHHHHHHHH
Confidence            35668899999921  1   111111 11335899999999998866555434443

>cd03110 Fer4_NifH_child This protein family's function is unkown

Probab=97.08  E-value=0.0042  Score=43.14  Aligned_cols=85  Identities=20%  Similarity=0.268  Sum_probs=57.0

Q ss_pred             eEEEEEEEeCCCccccccccccCcCCCcEEEEEEeCCCchhHHHHHHHHHHHHhhhCCCCCEEEEeeCCcccCCcccccC
Q 036449           52 STVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLRDDKQFFID  131 (197)
Q Consensus        52 ~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~~~ivv~nK~D~~~~~~~~~~  131 (197)
                      ..+.+.++|+|+....  .....+..+|.+++++..+ ..+...+ ..+.+.+...  +.++.+|+|+.|....      
T Consensus        91 ~~~d~viiDtpp~~~~--~~~~~l~~aD~vliv~~~~-~~~~~~~-~~~~~~l~~~--~~~~~vV~N~~~~~~~------  158 (179)
T cd03110          91 EGAELIIIDGPPGIGC--PVIASLTGADAALLVTEPT-PSGLHDL-ERAVELVRHF--GIPVGVVINKYDLNDE------  158 (179)
T ss_pred             cCCCEEEEECcCCCcH--HHHHHHHcCCEEEEEecCC-cccHHHH-HHHHHHHHHc--CCCEEEEEeCCCCCcc------
Confidence            3467889999975322  2223467899999999877 3455555 5666666654  5778999999987432      


Q ss_pred             CCCCCcccHHHHHHHHHHhCCCceE
Q 036449          132 HPGAVPISTAQGEELRKLIGAPAYI  156 (197)
Q Consensus       132 ~~~~~~~~~~~~~~~~~~~~~~~~~  156 (197)
                             ...+..++.+.++. +++
T Consensus       159 -------~~~~~~~~~~~~~~-~vl  175 (179)
T cd03110         159 -------IAEEIEDYCEEEGI-PIL  175 (179)
T ss_pred             -------hHHHHHHHHHHcCC-CeE
Confidence                   23456677777776 554

It contains nucleotide binding site. It uses NTP as energy source to transfer electron or ion.

>COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism]

Probab=97.07  E-value=0.00057  Score=47.18  Aligned_cols=21  Identities=24%  Similarity=0.324  Sum_probs=18.8

Q ss_pred             EEEEEcCCCCCHHHHHHHHhh
Q 036449            8 KCVTVGDGAVGKTCLLISYTS   28 (197)
Q Consensus         8 ~i~v~G~~~~GKstli~~~~~   28 (197)
                      .++++|++|+|||||+|-+-+
T Consensus        27 ~vAi~GpSGaGKSTLLnLIAG   47 (231)
T COG3840          27 IVAILGPSGAGKSTLLNLIAG   47 (231)
T ss_pred             EEEEECCCCccHHHHHHHHHh
Confidence            589999999999999987765

>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily

Probab=97.07  E-value=0.00051  Score=48.01  Aligned_cols=23  Identities=17%  Similarity=0.052  Sum_probs=19.9

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHhh
Q 036449            6 FIKCVTVGDGAVGKTCLLISYTS   28 (197)
Q Consensus         6 ~~~i~v~G~~~~GKstli~~~~~   28 (197)
                      ...|+++|++||||||+++.+..
T Consensus         3 ~~ii~i~G~~GsGKsTl~~~l~~   25 (188)
T TIGR01360         3 CKIIFIVGGPGSGKGTQCEKIVE   25 (188)
T ss_pred             CcEEEEECCCCCCHHHHHHHHHH
Confidence            34689999999999999988874

Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.

>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases

Probab=97.06  E-value=0.0006  Score=47.81  Aligned_cols=23  Identities=26%  Similarity=0.258  Sum_probs=20.5

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhhC
Q 036449            7 IKCVTVGDGAVGKTCLLISYTSN   29 (197)
Q Consensus         7 ~~i~v~G~~~~GKstli~~~~~~   29 (197)
                      -.++++|++|+||||+++.+...
T Consensus        26 ~~i~I~G~tGSGKTTll~aL~~~   48 (186)
T cd01130          26 KNILISGGTGSGKTTLLNALLAF   48 (186)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhh
Confidence            46999999999999999988764

The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.

>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []

Probab=97.05  E-value=0.0006  Score=45.31  Aligned_cols=21  Identities=29%  Similarity=0.354  Sum_probs=18.5

Q ss_pred             EEEEEcCCCCCHHHHHHHHhh
Q 036449            8 KCVTVGDGAVGKTCLLISYTS   28 (197)
Q Consensus         8 ~i~v~G~~~~GKstli~~~~~   28 (197)
                      .|+++|++|+|||+|++.+..
T Consensus         1 ~vlL~G~~G~GKt~l~~~la~   21 (139)
T PF07728_consen    1 PVLLVGPPGTGKTTLARELAA   21 (139)
T ss_dssp             EEEEEESSSSSHHHHHHHHHH
T ss_pred             CEEEECCCCCCHHHHHHHHHH
Confidence            489999999999999987764

The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.

>PF02367 UPF0079: Uncharacterised P-loop hydrolase UPF0079; InterPro: IPR003442 This group consists of bacterial proteins, which contain a P-loop

Probab=97.05  E-value=0.0028  Score=41.16  Aligned_cols=23  Identities=22%  Similarity=0.206  Sum_probs=19.9

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhhC
Q 036449            7 IKCVTVGDGAVGKTCLLISYTSN   29 (197)
Q Consensus         7 ~~i~v~G~~~~GKstli~~~~~~   29 (197)
                      --|++-|+-|+|||||++.+...
T Consensus        16 ~vi~L~GdLGaGKTtf~r~l~~~   38 (123)
T PF02367_consen   16 DVILLSGDLGAGKTTFVRGLARA   38 (123)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHHH
Confidence            45899999999999999888754

They are probably essential to bacteria as members are found in all genomes so far sequenced and no equivalent genes have been found in the archaea and eukaryotes, suggesting the protein may be involved in cell wall biosynthesis. The sequence of YjeE, from Haemophilus influenzae, has been determined to 1.7-A resolution. The protein has a nucleotide-binding fold with a four-stranded parallel beta-sheet flanked by antiparallel beta-strands on each side. The topology of the beta-sheet is unique among P-loop proteins and has features of different families of enzymes. ADP has been shown to bind to the P-loop in the presence of Mg2+ and ATPase activity has been confirmed by kinetic measurements [].; PDB: 1HTW_A 1FL9_A.

>cd01131 PilT Pilus retraction ATPase PilT

Probab=97.05  E-value=0.00057  Score=48.41  Aligned_cols=22  Identities=18%  Similarity=0.268  Sum_probs=19.3

Q ss_pred             EEEEcCCCCCHHHHHHHHhhCC
Q 036449            9 CVTVGDGAVGKTCLLISYTSNT   30 (197)
Q Consensus         9 i~v~G~~~~GKstli~~~~~~~   30 (197)
                      |+++|++|+||||+++.+...-
T Consensus         4 ilI~GptGSGKTTll~~ll~~~   25 (198)
T cd01131           4 VLVTGPTGSGKSTTLAAMIDYI   25 (198)
T ss_pred             EEEECCCCCCHHHHHHHHHHHh
Confidence            7899999999999998877643

PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.

>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2

Probab=97.04  E-value=0.00058  Score=48.34  Aligned_cols=21  Identities=19%  Similarity=0.180  Sum_probs=18.6

Q ss_pred             EEEEcCCCCCHHHHHHHHhhC
Q 036449            9 CVTVGDGAVGKTCLLISYTSN   29 (197)
Q Consensus         9 i~v~G~~~~GKstli~~~~~~   29 (197)
                      |.+.|++|||||||++.+...
T Consensus         2 igi~G~~GsGKSTl~~~l~~~   22 (198)
T cd02023           2 IGIAGGSGSGKTTVAEEIIEQ   22 (198)
T ss_pred             EEEECCCCCCHHHHHHHHHHH
Confidence            689999999999999888654

7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.

>PRK08233 hypothetical protein; Provisional

Probab=97.04  E-value=0.00074  Score=46.95  Aligned_cols=24  Identities=21%  Similarity=0.029  Sum_probs=20.7

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHhhC
Q 036449            6 FIKCVTVGDGAVGKTCLLISYTSN   29 (197)
Q Consensus         6 ~~~i~v~G~~~~GKstli~~~~~~   29 (197)
                      .+-|++.|.+|||||||.+.+...
T Consensus         3 ~~iI~I~G~~GsGKtTla~~L~~~   26 (182)
T PRK08233          3 TKIITIAAVSGGGKTTLTERLTHK   26 (182)
T ss_pred             ceEEEEECCCCCCHHHHHHHHHhh
Confidence            467889999999999999888754

>PRK06547 hypothetical protein; Provisional

Probab=97.04  E-value=0.00077  Score=46.61  Aligned_cols=26  Identities=23%  Similarity=0.294  Sum_probs=22.2

Q ss_pred             CceeEEEEEcCCCCCHHHHHHHHhhC
Q 036449            4 SRFIKCVTVGDGAVGKTCLLISYTSN   29 (197)
Q Consensus         4 ~~~~~i~v~G~~~~GKstli~~~~~~   29 (197)
                      .+...|++.|.+||||||+.+.+...
T Consensus        13 ~~~~~i~i~G~~GsGKTt~a~~l~~~   38 (172)
T PRK06547         13 GGMITVLIDGRSGSGKTTLAGALAAR   38 (172)
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHHH
Confidence            45678899999999999999888754

>PRK13949 shikimate kinase; Provisional

Probab=97.04  E-value=0.00067  Score=46.79  Aligned_cols=21  Identities=29%  Similarity=0.248  Sum_probs=18.7

Q ss_pred             EEEEEcCCCCCHHHHHHHHhh
Q 036449            8 KCVTVGDGAVGKTCLLISYTS   28 (197)
Q Consensus         8 ~i~v~G~~~~GKstli~~~~~   28 (197)
                      +|+++|++|+||||+.+.+..
T Consensus         3 ~I~liG~~GsGKstl~~~La~   23 (169)
T PRK13949          3 RIFLVGYMGAGKTTLGKALAR   23 (169)
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            799999999999999987654

>COG4962 CpaF Flp pilus assembly protein, ATPase CpaF [Intracellular trafficking and secretion]

Probab=97.03  E-value=0.0013  Score=49.83  Aligned_cols=25  Identities=24%  Similarity=0.211  Sum_probs=22.4

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhhCCC
Q 036449            7 IKCVTVGDGAVGKTCLLISYTSNTF   31 (197)
Q Consensus         7 ~~i~v~G~~~~GKstli~~~~~~~~   31 (197)
                      .+|++.|..|||||||+|.+..-..
T Consensus       174 ~NILisGGTGSGKTTlLNal~~~i~  198 (355)
T COG4962         174 CNILISGGTGSGKTTLLNALSGFID  198 (355)
T ss_pred             eeEEEeCCCCCCHHHHHHHHHhcCC
Confidence            6899999999999999999987543

>cd03111 CpaE_like This protein family consists of proteins similar to the cpaE protein of the Caulobacter pilus assembly and the orf4 protein of Actinobacillus pilus formation gene cluster

Probab=97.00  E-value=0.0024  Score=40.40  Aligned_cols=61  Identities=20%  Similarity=0.090  Sum_probs=39.6

Q ss_pred             EEEEEeCCCccccccccccCcCCCcEEEEEEeCCCchhHHHHHHHHHHHHhhhC-C-CCCEEEEeeC
Q 036449           55 NLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYA-P-GVPIILVGTK  119 (197)
Q Consensus        55 ~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~i~~~~-~-~~~~ivv~nK  119 (197)
                      .+.++|+|+.....  ....+..+|.++++.+.+ ..+.... ..+.+.++... + ...+.+|+|+
T Consensus        44 D~IIiDtpp~~~~~--~~~~l~~aD~vlvvv~~~-~~s~~~~-~~~~~~l~~~~~~~~~~~~lVvNr  106 (106)
T cd03111          44 DYVVVDLGRSLDEV--SLAALDQADRVFLVTQQD-LPSIRNA-KRLLELLRVLDYSLPAKIELVLNR  106 (106)
T ss_pred             CEEEEeCCCCcCHH--HHHHHHHcCeEEEEecCC-hHHHHHH-HHHHHHHHHcCCCCcCceEEEecC
Confidence            46699999864322  233567889999988754 4555555 56666666554 3 4566677774

The function of these proteins are unkown. The Caulobacter pilus assembly contains 7 genes: pilA, cpaA, cpaB, cpaC, cpaD, cpaE and cpaF. These genes are clustered together on chromosome.

>PRK00300 gmk guanylate kinase; Provisional

Probab=96.99  E-value=0.00067  Score=48.24  Aligned_cols=23  Identities=22%  Similarity=0.326  Sum_probs=20.0

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhhC
Q 036449            7 IKCVTVGDGAVGKTCLLISYTSN   29 (197)
Q Consensus         7 ~~i~v~G~~~~GKstli~~~~~~   29 (197)
                      --|+++|++|||||||++.+...
T Consensus         6 ~~i~i~G~sGsGKstl~~~l~~~   28 (205)
T PRK00300          6 LLIVLSGPSGAGKSTLVKALLER   28 (205)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhh
Confidence            35899999999999999888764

>PRK00625 shikimate kinase; Provisional

Probab=96.99  E-value=0.00074  Score=46.75  Aligned_cols=22  Identities=23%  Similarity=0.250  Sum_probs=19.3

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhh
Q 036449            7 IKCVTVGDGAVGKTCLLISYTS   28 (197)
Q Consensus         7 ~~i~v~G~~~~GKstli~~~~~   28 (197)
                      ++|+++|.+||||||+.+.+..
T Consensus         1 ~~I~LiG~pGsGKTT~~k~La~   22 (173)
T PRK00625          1 MQIFLCGLPTVGKTSFGKALAK   22 (173)
T ss_pred             CEEEEECCCCCCHHHHHHHHHH
Confidence            3799999999999999987754

>PLN02674 adenylate kinase

Probab=96.98  E-value=0.00085  Score=48.94  Aligned_cols=26  Identities=12%  Similarity=0.049  Sum_probs=22.0

Q ss_pred             CCceeEEEEEcCCCCCHHHHHHHHhh
Q 036449            3 ASRFIKCVTVGDGAVGKTCLLISYTS   28 (197)
Q Consensus         3 ~~~~~~i~v~G~~~~GKstli~~~~~   28 (197)
                      .....+|+++|++||||+|+...+..
T Consensus        28 ~~~~~~i~l~G~PGsGKgT~a~~La~   53 (244)
T PLN02674         28 SKPDKRLILIGPPGSGKGTQSPIIKD   53 (244)
T ss_pred             cccCceEEEECCCCCCHHHHHHHHHH
Confidence            34568899999999999999987765

>PRK02496 adk adenylate kinase; Provisional

Probab=96.97  E-value=0.00085  Score=46.90  Aligned_cols=22  Identities=14%  Similarity=0.252  Sum_probs=19.8

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhh
Q 036449            7 IKCVTVGDGAVGKTCLLISYTS   28 (197)
Q Consensus         7 ~~i~v~G~~~~GKstli~~~~~   28 (197)
                      ++|+++|++|+||||+.+.+..
T Consensus         2 ~~i~i~G~pGsGKst~a~~la~   23 (184)
T PRK02496          2 TRLIFLGPPGAGKGTQAVVLAE   23 (184)
T ss_pred             eEEEEECCCCCCHHHHHHHHHH
Confidence            6899999999999999988764

>PRK13851 type IV secretion system protein VirB11; Provisional

Probab=96.96  E-value=0.0031  Score=48.50  Aligned_cols=26  Identities=19%  Similarity=0.161  Sum_probs=22.5

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHhhCCC
Q 036449            6 FIKCVTVGDGAVGKTCLLISYTSNTF   31 (197)
Q Consensus         6 ~~~i~v~G~~~~GKstli~~~~~~~~   31 (197)
                      ..+|+|.|+.|||||||++++...-.
T Consensus       162 ~~nilI~G~tGSGKTTll~aLl~~i~  187 (344)
T PRK13851        162 RLTMLLCGPTGSGKTTMSKTLISAIP  187 (344)
T ss_pred             CCeEEEECCCCccHHHHHHHHHcccC
Confidence            36799999999999999999987543

>cd01428 ADK Adenylate kinase (ADK) catalyzes the reversible phosphoryl transfer from adenosine triphosphates (ATP) to adenosine monophosphates (AMP) and to yield adenosine diphosphates (ADP)

Probab=96.96  E-value=0.0007  Score=47.60  Aligned_cols=22  Identities=14%  Similarity=0.179  Sum_probs=19.6

Q ss_pred             EEEEEcCCCCCHHHHHHHHhhC
Q 036449            8 KCVTVGDGAVGKTCLLISYTSN   29 (197)
Q Consensus         8 ~i~v~G~~~~GKstli~~~~~~   29 (197)
                      +|+++|++||||||+...+...
T Consensus         1 ~I~i~G~pGsGKst~a~~La~~   22 (194)
T cd01428           1 RILLLGPPGSGKGTQAERLAKK   22 (194)
T ss_pred             CEEEECCCCCCHHHHHHHHHHH
Confidence            5899999999999999888754

This enzyme is required for the biosynthesis of ADP and is essential for homeostasis of adenosine phosphates.

>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]

Probab=96.96  E-value=0.0007  Score=51.55  Aligned_cols=22  Identities=27%  Similarity=0.348  Sum_probs=19.2

Q ss_pred             EEEEcCCCCCHHHHHHHHhhCC
Q 036449            9 CVTVGDGAVGKTCLLISYTSNT   30 (197)
Q Consensus         9 i~v~G~~~~GKstli~~~~~~~   30 (197)
                      ++++|++|||||||++-+-+-.
T Consensus        32 ~vllGPSGcGKSTlLr~IAGLe   53 (338)
T COG3839          32 VVLLGPSGCGKSTLLRMIAGLE   53 (338)
T ss_pred             EEEECCCCCCHHHHHHHHhCCC
Confidence            7899999999999998887543

>PLN02200 adenylate kinase family protein

Probab=96.96  E-value=0.0011  Score=48.28  Aligned_cols=24  Identities=13%  Similarity=0.043  Sum_probs=20.8

Q ss_pred             ceeEEEEEcCCCCCHHHHHHHHhh
Q 036449            5 RFIKCVTVGDGAVGKTCLLISYTS   28 (197)
Q Consensus         5 ~~~~i~v~G~~~~GKstli~~~~~   28 (197)
                      ..+.|+++|++||||||+..++..
T Consensus        42 ~~~ii~I~G~PGSGKsT~a~~La~   65 (234)
T PLN02200         42 TPFITFVLGGPGSGKGTQCEKIVE   65 (234)
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHH
Confidence            457899999999999999987764

>TIGR00150 HI0065_YjeE ATPase, YjeE family

Probab=96.95  E-value=0.0023  Score=42.13  Aligned_cols=23  Identities=26%  Similarity=0.283  Sum_probs=20.4

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhhC
Q 036449            7 IKCVTVGDGAVGKTCLLISYTSN   29 (197)
Q Consensus         7 ~~i~v~G~~~~GKstli~~~~~~   29 (197)
                      --|++.|+.|+|||||++.+...
T Consensus        23 ~~i~l~G~lGaGKTtl~~~l~~~   45 (133)
T TIGR00150        23 TVVLLKGDLGAGKTTLVQGLLQG   45 (133)
T ss_pred             CEEEEEcCCCCCHHHHHHHHHHH
Confidence            35899999999999999988865

Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.

>PRK14531 adenylate kinase; Provisional

Probab=96.95  E-value=0.00086  Score=46.88  Aligned_cols=23  Identities=13%  Similarity=0.151  Sum_probs=19.9

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhhC
Q 036449            7 IKCVTVGDGAVGKTCLLISYTSN   29 (197)
Q Consensus         7 ~~i~v~G~~~~GKstli~~~~~~   29 (197)
                      .+|+++|++||||||+...+...
T Consensus         3 ~~i~i~G~pGsGKsT~~~~la~~   25 (183)
T PRK14531          3 QRLLFLGPPGAGKGTQAARLCAA   25 (183)
T ss_pred             cEEEEECCCCCCHHHHHHHHHHH
Confidence            47999999999999999887543

>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A

Probab=96.95  E-value=0.00069  Score=47.12  Aligned_cols=24  Identities=25%  Similarity=0.292  Sum_probs=16.1

Q ss_pred             ceeEEEEEcCCCCCHHHHHHHHhh
Q 036449            5 RFIKCVTVGDGAVGKTCLLISYTS   28 (197)
Q Consensus         5 ~~~~i~v~G~~~~GKstli~~~~~   28 (197)
                      ..-.++|.|++|+|||+|++++..
T Consensus        23 ~~~~~ll~G~~G~GKT~ll~~~~~   46 (185)
T PF13191_consen   23 SPRNLLLTGESGSGKTSLLRALLD   46 (185)
T ss_dssp             ----EEE-B-TTSSHHHHHHHHHH
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHH
Confidence            345689999999999999987664

>PRK05057 aroK shikimate kinase I; Reviewed

Probab=96.95  E-value=0.001  Score=46.05  Aligned_cols=23  Identities=17%  Similarity=0.161  Sum_probs=20.0

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhhC
Q 036449            7 IKCVTVGDGAVGKTCLLISYTSN   29 (197)
Q Consensus         7 ~~i~v~G~~~~GKstli~~~~~~   29 (197)
                      -+|+++|++|+||||+.+.+...
T Consensus         5 ~~I~liG~~GaGKStl~~~La~~   27 (172)
T PRK05057          5 RNIFLVGPMGAGKSTIGRQLAQQ   27 (172)
T ss_pred             CEEEEECCCCcCHHHHHHHHHHH
Confidence            36999999999999999887653

>PHA00729 NTP-binding motif containing protein

Probab=96.94  E-value=0.00097  Score=47.90  Aligned_cols=25  Identities=24%  Similarity=0.444  Sum_probs=21.4

Q ss_pred             ceeEEEEEcCCCCCHHHHHHHHhhC
Q 036449            5 RFIKCVTVGDGAVGKTCLLISYTSN   29 (197)
Q Consensus         5 ~~~~i~v~G~~~~GKstli~~~~~~   29 (197)
                      ...+|++.|++|+|||+|..++...
T Consensus        16 ~f~nIlItG~pGvGKT~LA~aLa~~   40 (226)
T PHA00729         16 GFVSAVIFGKQGSGKTTYALKVARD   40 (226)
T ss_pred             CeEEEEEECCCCCCHHHHHHHHHHH
Confidence            4578999999999999999887653

>cd02025 PanK Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway

Probab=96.93  E-value=0.00077  Score=48.58  Aligned_cols=20  Identities=25%  Similarity=0.180  Sum_probs=17.9

Q ss_pred             EEEEcCCCCCHHHHHHHHhh
Q 036449            9 CVTVGDGAVGKTCLLISYTS   28 (197)
Q Consensus         9 i~v~G~~~~GKstli~~~~~   28 (197)
                      |.+.|++|||||||++.+..
T Consensus         2 igI~G~sGSGKTTla~~L~~   21 (220)
T cd02025           2 IGIAGSVAVGKSTTARVLQA   21 (220)
T ss_pred             EEeeCCCCCCHHHHHHHHHH
Confidence            67999999999999988765

The reaction carried out by this enzyme is a key regulatory point in CoA biosynthesis.

>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids

Probab=96.92  E-value=0.0012  Score=45.90  Aligned_cols=23  Identities=22%  Similarity=0.182  Sum_probs=20.2

Q ss_pred             EEEEEcCCCCCHHHHHHHHhhCC
Q 036449            8 KCVTVGDGAVGKTCLLISYTSNT   30 (197)
Q Consensus         8 ~i~v~G~~~~GKstli~~~~~~~   30 (197)
                      .++++|+.|+|||||++.+.+..
T Consensus        27 ~~~l~G~nGsGKSTLl~~l~Gl~   49 (177)
T cd03222          27 VIGIVGPNGTGKTTAVKILAGQL   49 (177)
T ss_pred             EEEEECCCCChHHHHHHHHHcCC
Confidence            58999999999999999887653

RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.

>PF01580 FtsK_SpoIIIE: FtsK/SpoIIIE family; InterPro: IPR002543 The FtsK/SpoIIIE domain is found extensively in a wide variety of proteins from prokaryotes and plasmids [] some of which contain up to three copies

Probab=96.92  E-value=0.0032  Score=44.78  Aligned_cols=80  Identities=19%  Similarity=0.166  Sum_probs=40.9

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhhCCCCCCCCCceeeeeeEEEEECCeEEEEEEEeCCCccccccccccCcCCCcEEEEEEe
Q 036449            7 IKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFS   86 (197)
Q Consensus         7 ~~i~v~G~~~~GKstli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d   86 (197)
                      .+++++|.+|+|||+++..+...-.... .              ...+.+.+.|..|. .+..+...    .+... +..
T Consensus        39 ~h~li~G~tgsGKS~~l~~ll~~l~~~~-~--------------p~~~~l~iiD~k~~-~l~~~~~~----~~~~~-~~~   97 (205)
T PF01580_consen   39 PHLLIAGATGSGKSTLLRTLLLSLALTY-S--------------PDDVQLYIIDPKGS-DLAPLADL----PHVAA-VAV   97 (205)
T ss_dssp             -SEEEE--TTSSHHHHHHHHHHHHHTT-----------------TTTEEEEEE-TTSS-CCGGGTT-----TTBSS--S-
T ss_pred             ceEEEEcCCCCCccHHHHHHHHHHHHHh-c--------------CCccEEEEEcCCcc-ccchhhhh----hhhcc-ccc
Confidence            4899999999999999987765432211 0              01256778998866 33332211    11111 334


Q ss_pred             CCCchhHHHHHHHHHHHHhhh
Q 036449           87 LISKASYENVSKKWIPELKHY  107 (197)
Q Consensus        87 ~~~~~s~~~~~~~~~~~i~~~  107 (197)
                      .++.+....+...+...+..+
T Consensus        98 ~~~~~~~~~~l~~l~~em~~R  118 (205)
T PF01580_consen   98 ATDPEEILRLLEELVEEMERR  118 (205)
T ss_dssp             B-SHHHHHHHHHHHHHHHHHH
T ss_pred             cccHHHHHHHHHHHHHHHHHH
Confidence            456666555545555555544

The domain contains a putative ATP binding P-loop motif. A mutation in FtsK causes a temperature sensitive block in cell division and it is involved in peptidoglycan synthesis or modification []. The SpoIIIE protein is implicated in intercellular chromosomal DNA transfer []. ; GO: 0000166 nucleotide binding, 0003677 DNA binding, 0005524 ATP binding, 0007049 cell cycle, 0007059 chromosome segregation, 0051301 cell division, 0016021 integral to membrane; PDB: 2IUS_E 2IUU_A 2IUT_A.

>PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed

Probab=96.91  E-value=0.0012  Score=47.94  Aligned_cols=26  Identities=19%  Similarity=0.082  Sum_probs=22.4

Q ss_pred             CceeEEEEEcCCCCCHHHHHHHHhhC
Q 036449            4 SRFIKCVTVGDGAVGKTCLLISYTSN   29 (197)
Q Consensus         4 ~~~~~i~v~G~~~~GKstli~~~~~~   29 (197)
                      .+..-|.+.|++|+|||||++.+...
T Consensus        31 ~~~~iigi~G~~GsGKTTl~~~L~~~   56 (229)
T PRK09270         31 QRRTIVGIAGPPGAGKSTLAEFLEAL   56 (229)
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHHH
Confidence            46688999999999999999887754

>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family

Probab=96.91  E-value=0.00089  Score=46.68  Aligned_cols=21  Identities=19%  Similarity=0.227  Sum_probs=18.6

Q ss_pred             EEEEcCCCCCHHHHHHHHhhC
Q 036449            9 CVTVGDGAVGKTCLLISYTSN   29 (197)
Q Consensus         9 i~v~G~~~~GKstli~~~~~~   29 (197)
                      |+++|++||||||+...+...
T Consensus         2 i~i~G~pGsGKst~a~~la~~   22 (183)
T TIGR01359         2 VFVLGGPGSGKGTQCAKIVEN   22 (183)
T ss_pred             EEEECCCCCCHHHHHHHHHHH
Confidence            789999999999999887653

This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic.

>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B

Probab=96.90  E-value=0.00086  Score=43.92  Aligned_cols=22  Identities=27%  Similarity=0.295  Sum_probs=18.0

Q ss_pred             EEEEEcCCCCCHHHHHHHHhhC
Q 036449            8 KCVTVGDGAVGKTCLLISYTSN   29 (197)
Q Consensus         8 ~i~v~G~~~~GKstli~~~~~~   29 (197)
                      -+++.|++|+|||++++.+...
T Consensus         6 ~~~i~G~~G~GKT~~~~~~~~~   27 (131)
T PF13401_consen    6 ILVISGPPGSGKTTLIKRLARQ   27 (131)
T ss_dssp             -EEEEE-TTSSHHHHHHHHHHH
T ss_pred             ccEEEcCCCCCHHHHHHHHHHH
Confidence            4789999999999999888764

>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]

Probab=96.90  E-value=0.00087  Score=49.08  Aligned_cols=20  Identities=25%  Similarity=0.351  Sum_probs=18.4

Q ss_pred             EEEEcCCCCCHHHHHHHHhh
Q 036449            9 CVTVGDGAVGKTCLLISYTS   28 (197)
Q Consensus         9 i~v~G~~~~GKstli~~~~~   28 (197)
                      ++++|+.|||||||++.+.+
T Consensus        31 ~~iiGpNG~GKSTLLk~l~g   50 (258)
T COG1120          31 TGILGPNGSGKSTLLKCLAG   50 (258)
T ss_pred             EEEECCCCCCHHHHHHHHhc
Confidence            78999999999999988876

>PRK05416 glmZ(sRNA)-inactivating NTPase; Provisional

Probab=96.90  E-value=0.008  Score=45.11  Aligned_cols=21  Identities=19%  Similarity=0.238  Sum_probs=19.0

Q ss_pred             eEEEEEcCCCCCHHHHHHHHh
Q 036449            7 IKCVTVGDGAVGKTCLLISYT   27 (197)
Q Consensus         7 ~~i~v~G~~~~GKstli~~~~   27 (197)
                      -.|++.|.+|+||||+++.+-
T Consensus         7 ~~i~i~G~~GsGKtt~~~~l~   27 (288)
T PRK05416          7 RLVIVTGLSGAGKSVALRALE   27 (288)
T ss_pred             eEEEEECCCCCcHHHHHHHHH
Confidence            468999999999999999885

>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE)

Probab=96.89  E-value=0.00096  Score=47.92  Aligned_cols=22  Identities=27%  Similarity=0.243  Sum_probs=19.8

Q ss_pred             EEEEEcCCCCCHHHHHHHHhhC
Q 036449            8 KCVTVGDGAVGKTCLLISYTSN   29 (197)
Q Consensus         8 ~i~v~G~~~~GKstli~~~~~~   29 (197)
                      .++++|+.|+|||||++.+.+.
T Consensus        32 ~~~l~G~nGsGKSTLl~~i~Gl   53 (218)
T cd03255          32 FVAIVGPSGSGKSTLLNILGGL   53 (218)
T ss_pred             EEEEEcCCCCCHHHHHHHHhCC
Confidence            4799999999999999998865

They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.

>COG4525 TauB ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=96.89  E-value=0.00087  Score=46.86  Aligned_cols=21  Identities=33%  Similarity=0.400  Sum_probs=18.3

Q ss_pred             EEEEEcCCCCCHHHHHHHHhh
Q 036449            8 KCVTVGDGAVGKTCLLISYTS   28 (197)
Q Consensus         8 ~i~v~G~~~~GKstli~~~~~   28 (197)
                      -++++|++|+|||||+|-+-+
T Consensus        33 ~vv~lGpSGcGKTTLLnl~AG   53 (259)
T COG4525          33 LVVVLGPSGCGKTTLLNLIAG   53 (259)
T ss_pred             EEEEEcCCCccHHHHHHHHhc
Confidence            378999999999999987754

>PRK13900 type IV secretion system ATPase VirB11; Provisional

Probab=96.89  E-value=0.00086  Score=51.32  Aligned_cols=25  Identities=16%  Similarity=0.134  Sum_probs=22.0

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHhhCC
Q 036449            6 FIKCVTVGDGAVGKTCLLISYTSNT   30 (197)
Q Consensus         6 ~~~i~v~G~~~~GKstli~~~~~~~   30 (197)
                      ..+|+|+|++|+|||||++++...-
T Consensus       160 ~~nili~G~tgSGKTTll~aL~~~i  184 (332)
T PRK13900        160 KKNIIISGGTSTGKTTFTNAALREI  184 (332)
T ss_pred             CCcEEEECCCCCCHHHHHHHHHhhC
Confidence            4689999999999999999988643

>TIGR01351 adk adenylate kinases

Probab=96.89  E-value=0.00081  Score=48.08  Aligned_cols=21  Identities=19%  Similarity=0.194  Sum_probs=18.8

Q ss_pred             EEEEEcCCCCCHHHHHHHHhh
Q 036449            8 KCVTVGDGAVGKTCLLISYTS   28 (197)
Q Consensus         8 ~i~v~G~~~~GKstli~~~~~   28 (197)
                      ||+|+|++||||||+...+..
T Consensus         1 rI~i~G~pGsGKsT~a~~La~   21 (210)
T TIGR01351         1 RLVLLGPPGSGKGTQAKRIAE   21 (210)
T ss_pred             CEEEECCCCCCHHHHHHHHHH
Confidence            589999999999999988764

Adenylate kinase (EC 2.7.4.3) converts ATP + AMP to ADP + ADP, that is, uses ATP as a phosphate donor for AMP. Most members of this family are known or believed to be adenylate kinase. However, some members accept other nucleotide triphosphates as donors, may be unable to use ATP, and may fail to complement adenylate kinase mutants. An example of a nucleoside-triphosphate--adenylate kinase (EC 2.7.4.10) is a GTP:AMP phosphotransferase. This family is designated subfamily rather than equivalog for this reason.

>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein

Probab=96.89  E-value=0.00098  Score=47.82  Aligned_cols=22  Identities=23%  Similarity=0.259  Sum_probs=19.9

Q ss_pred             EEEEEcCCCCCHHHHHHHHhhC
Q 036449            8 KCVTVGDGAVGKTCLLISYTSN   29 (197)
Q Consensus         8 ~i~v~G~~~~GKstli~~~~~~   29 (197)
                      .++++|+.|+|||||++.+.+-
T Consensus        31 ~~~i~G~nGsGKSTLl~~l~Gl   52 (216)
T TIGR00960        31 MVFLVGHSGAGKSTFLKLILGI   52 (216)
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            4899999999999999988875

>PRK04195 replication factor C large subunit; Provisional

Probab=96.89  E-value=0.012  Score=47.70  Aligned_cols=24  Identities=25%  Similarity=0.253  Sum_probs=20.7

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHhhC
Q 036449            6 FIKCVTVGDGAVGKTCLLISYTSN   29 (197)
Q Consensus         6 ~~~i~v~G~~~~GKstli~~~~~~   29 (197)
                      .-.+++.|++|+||||+++.+...
T Consensus        39 ~~~lLL~GppG~GKTtla~ala~e   62 (482)
T PRK04195         39 KKALLLYGPPGVGKTSLAHALAND   62 (482)
T ss_pred             CCeEEEECCCCCCHHHHHHHHHHH
Confidence            346899999999999999988764

>KOG3347 consensus Predicted nucleotide kinase/nuclear protein involved oxidative stress response [Nucleotide transport and metabolism]

Probab=96.89  E-value=0.00079  Score=44.78  Aligned_cols=25  Identities=16%  Similarity=0.174  Sum_probs=21.7

Q ss_pred             CceeEEEEEcCCCCCHHHHHHHHhh
Q 036449            4 SRFIKCVTVGDGAVGKTCLLISYTS   28 (197)
Q Consensus         4 ~~~~~i~v~G~~~~GKstli~~~~~   28 (197)
                      ....+|+|.|.||+|||||..++..
T Consensus         5 r~~PNILvtGTPG~GKstl~~~lae   29 (176)
T KOG3347|consen    5 RERPNILVTGTPGTGKSTLAERLAE   29 (176)
T ss_pred             hcCCCEEEeCCCCCCchhHHHHHHH
Confidence            3458999999999999999988764

>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota

Probab=96.88  E-value=0.001  Score=47.53  Aligned_cols=22  Identities=27%  Similarity=0.294  Sum_probs=19.7

Q ss_pred             EEEEEcCCCCCHHHHHHHHhhC
Q 036449            8 KCVTVGDGAVGKTCLLISYTSN   29 (197)
Q Consensus         8 ~i~v~G~~~~GKstli~~~~~~   29 (197)
                      .++++|+.|+|||||++.+.+.
T Consensus        29 ~~~l~G~nGsGKSTLl~~l~G~   50 (211)
T cd03225          29 FVLIVGPNGSGKSTLLRLLNGL   50 (211)
T ss_pred             EEEEECCCCCCHHHHHHHHhcC
Confidence            4789999999999999988865

The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	197
3bwd_D	182	Crystal Structure Of The Plant Rho Protein Rop5 Len		2e-99
2nty_C	180	Rop4-Gdp-Prone8 Length = 180		9e-98
2wbl_C	180	Three-Dimensional Structure Of A Binary Rop-Prone C		1e-92
2j0v_A	212	The Crystal Structure Of Arabidopsis Thaliana Rac7-		5e-82
2yin_C	196	Structure Of The Complex Between Dock2 And Rac1. Le		5e-63
1i4d_D	192	Crystal Structure Analysis Of Rac1-Gdp Complexed Wi		6e-63
2fju_A	178	Activated Rac1 Bound To Its Effector Phospholipase		6e-63
3sua_A	184	Crystal Structure Of The Intracellular Domain Of Pl		7e-63
1foe_B	177	Crystal Structure Of Rac1 In Complex With The Guani		7e-63
2vrw_A	184	Critical Structural Role For The Ph And C1 Domains		8e-63
3th5_A	204	Crystal Structure Of Wild-Type Rac1 Length = 204		9e-63
3b13_B	184	Crystal Structure Of The Dhr-2 Domain Of Dock2 In C		2e-62
1he1_C	176	Crystal Structure Of The Complex Between The Gap Do		3e-62
4gzm_A	204	Crystal Structure Of Rac1 F28l Mutant Length = 204		3e-62
1ds6_A	192	Crystal Structure Of A Rac-Rhogdi Complex Length =		5e-62
1i4t_D	192	Crystal Structure Analysis Of Rac1-Gmppnp In Comple		6e-62
1e96_A	192	Structure Of The RacP67PHOX COMPLEX Length = 192		6e-62
2h7v_A	188	Co-crystal Structure Of Ypka-rac1 Length = 188		6e-62
1hh4_A	192	Rac1-Rhogdi Complex Involved In Nadph Oxidase Activ		7e-62
3ryt_C	180	The Plexin A1 Intracellular Region In Complex With		7e-62
3sbd_A	187	Crystal Structure Of Rac1 P29s Mutant Length = 187		8e-62
1g4u_R	184	Crystal Structure Of The Salmonella Tyrosine Phosph		8e-62
4gzl_A	204	Crystal Structure Of Rac1 Q61l Mutant Length = 204		8e-62
1mh1_A	186	Small G-Protein Length = 186		9e-62
2wkp_A	332	Structure Of A Photoactivatable Rac1 Containing Lov		1e-61
2wkq_A	332	Structure Of A Photoactivatable Rac1 Containing The		1e-61
2wkr_A	332	Structure Of A Photoactivatable Rac1 Containing The		1e-61
2g0n_A	179	The Crystal Structure Of The Human Rac3 In Complex		1e-61
2c2h_A	192	Crystal Structure Of The Human Rac3 In Complex With		2e-61
2ic5_A	180	Crystal Structure Of Human Rac3 Grown In The Presen		2e-61
2w2t_A	185	Rac2 (G12v) In Complex With Gdp Length = 185		7e-61
2w2v_A	184	Rac2 (G12v) In Complex With Gtpgs Length = 184		1e-60
1ryf_A	203	Alternative Splicing Of Rac1 Generates Rac1b, A Sel		2e-60
2atx_A	194	Crystal Structure Of The Tc10 Gppnhp Complex Length		1e-54
1aje_A	194	Cdc42 From Human, Nmr, 20 Structures Length = 194		4e-54
3gcg_A	182	Crystal Structure Of Map And Cdc42 Complex Length =		2e-53
2wm9_B	190	Structure Of The Complex Between Dock9 And Cdc42. L		2e-53
2dfk_B	194	Crystal Structure Of The Cdc42-Collybistin Ii Compl		3e-53
2odb_A	192	The Crystal Structure Of Human Cdc42 In Complex Wit		3e-53
1doa_A	191	Structure Of The Rho Family Gtp-Binding Protein Cdc		3e-53
4did_A	193	Crystal Structure Of Salmonella Effector N-Terminal		3e-53
2qrz_A	189	Cdc42 Bound To Gmp-Pcp: Induced Fit By Effector Is		3e-53
1kz7_B	188	Crystal Structure Of The DhPH FRAGMENT OF MURINE DB		3e-53
1grn_A	191	Crystal Structure Of The Cdc42CDC42GAPALF3 COMPLEX.		3e-53
1ees_A	178	Solution Structure Of Cdc42hs Complexed With A Pept		3e-53
1cee_A	179	Solution Structure Of Cdc42 In Complex With The Gtp		3e-53
3eg5_A	178	Crystal Structure Of Mdia1-Tsh Gbd-Fh3 In Complex W		4e-53
1gzs_A	180	Crystal Structure Of The Complex Between The Gef Do		4e-53
1am4_D	177	Complex Between Cdc42hs.Gmppnp And P50 Rhogap (H. S		5e-53
1an0_A	190	Cdc42hs-Gdp Complex Length = 190		6e-53
3qbv_A	178	Structure Of Designed Orthogonal Interaction Betwee		8e-53
3vhl_B	195	Crystal Structure Of The Dhr-2 Domain Of Dock8 In C		9e-53
2kb0_A	178	Cdc42(T35a) Length = 178		1e-52
2ase_A	178	Nmr Structure Of The F28l Mutant Of Cdc42hs Length		2e-52
1a4r_B	191	G12v Mutant Of Human Placental Cdc42 Gtpase In The		3e-52
1nf3_A	195	Structure Of Cdc42 In A Complex With The Gtpase-Bin		3e-52
1cf4_A	184	Cdc42ACK GTPASE-Binding Domain Complex Length = 184		3e-52
2q3h_A	201	The Crystal Structure Of Rhoua In The Gdp-bound Sta		4e-50
1lb1_B	192	Crystal Structure Of The Dbl And Pleckstrin Homolog		3e-48
3tvd_A	193	Crystal Structure Of Mouse Rhoa-Gtp Complex Length		3e-48
3lw8_A	185	Shigella Ipgb2 In Complex With Human Rhoa, Gdp And		3e-48
1s1c_A	183	Crystal Structure Of The Complex Between The Human		3e-48
1x86_B	196	Crystal Structure Of The DhPH DOMAINS OF LEUKEMIA-A		3e-48
4f38_A	195	Crystal Structure Of Geranylgeranylated Rhoa In Com		3e-48
3kz1_E	182	Crystal Structure Of The Complex Of Pdz-Rhogef DhPH		3e-48
1cc0_A	190	Crystal Structure Of The Rhoa.Gdp-Rhogdi Complex Le		8e-48
1ow3_B	193	Crystal Structure Of Rhoa.Gdp.Mgf3-In Complex With		9e-48
3msx_A	180	Crystal Structure Of Rhoa.Gdp.Mgf3 In Complex With		1e-47
1tx4_B	177	RhoRHOGAPGDP(DOT)ALF4 COMPLEX Length = 177		1e-47
1xcg_B	178	Crystal Structure Of Human Rhoa In Complex With DhP		1e-47
2gcn_A	201	Crystal Structure Of The Human Rhoc-Gdp Complex Len		2e-47
2gco_A	201	Crystal Structure Of The Human Rhoc-gppnhp Complex		2e-47
1cxz_A	182	Crystal Structure Of Human Rhoa Complexed With The		3e-47
2fv8_A	207	The Crystal Structure Of Rhob In The Gdp-Bound Stat		4e-47
1dpf_A	180	Crystal Structure Of A Mg-Free Form Of Rhoa Complex		4e-47
1z2c_A	193	Crystal Structure Of Mdia1 Gbd-Fh3 In Complex With		6e-47
3a58_B	188	Crystal Structure Of Sec3p - Rho1p Complex From Sac		7e-47
1kmq_A	184	Crystal Structure Of A Constitutively Activated Rho		1e-46
2j1l_A	214	Crystal Structure Of Human Rho-Related Gtp-Binding		1e-42
4dvg_A	188	Crystal Structure Of E. Histolytica Formin1 Bound T		3e-39
3ref_B	194	Crystal Structure Of Ehrho1 Bound To Gdp And Magnes		4e-39
2v55_B	200	Mechanism Of Multi-site Phosphorylation From A Rock		8e-32
1gwn_A	205	The Crystal Structure Of The Core Domain Of RhoeRND		1e-31
1m7b_A	184	Crystal Structure Of Rnd3RHOE: FUNCTIONAL IMPLICATI		3e-31
2cls_A	198	The Crystal Structure Of The Human Rnd1 Gtpase In T		5e-27
3q3j_B	214	Crystal Structure Of Plexin A2 Rbd In Complex With		5e-27
2rex_B	197	Crystal Structure Of The Effector Domain Of Plxnb1		5e-27
1wms_A	177	High Resolution Crystal Structure Of Human Rab9 Gtp		7e-22
1s8f_A	177	Crystal Structure Of Rab9 Complexed To Gdp Reveals		8e-22
1yzl_A	179	Gppnhp-Bound Rab9 Gtpase Length = 179		1e-21
2ocb_A	180	Crystal Structure Of Human Rab9b In Complex With A		2e-21
1agp_A	166	Three-Dimensional Structures And Properties Of A Tr		4e-21
421p_A	166	Three-Dimensional Structures Of H-Ras P21 Mutants:		5e-21
1clu_A	166	H-Ras Complexed With Diaminobenzophenone-Beta,Gamma		1e-20
2eqb_A	174	Crystal Structure Of The Rab Gtpase Sec4p, The Sec2		2e-20
1jah_A	166	H-Ras P21 Protein Mutant G12p, Complexed With Guano		3e-20
4i1o_A	181	Crystal Structure Of The Legionella Pneumophila Gap		3e-20
3jza_A	175	Crystal Structure Of Human Rab1b In Complex With Th		3e-20
3cph_A	213	Crystal Structure Of Sec4 In Complex With Rab-Gdi L		4e-20
2f7s_A	217	The Crystal Structure Of Human Rab27b Bound To Gdp		4e-20
4dso_A	189	Small-Molecule Ligands Bind To A Distinct Pocket In		4e-20
2kwi_A	178	Ralb-Rlip76 (Ralbp1) Complex Length = 178		5e-20
2ke5_A	174	Solution Structure And Dynamics Of The Small Gtpase		5e-20
1g17_A	170	Crystal Structure Of Sec4-Guanosine-5'-(Beta,Gamma)		5e-20
4fmd_F	164	Espg-Rab1 Complex Structure At 3.05 A Length = 164		5e-20
4epr_A	170	Discovery Of Small Molecules That Bind To K-Ras And		5e-20
4fmb_B	171	Vira-Rab1 Complex Structure Length = 171		6e-20
4fmc_B	171	Espg-Rab1 Complex Length = 171		7e-20
2g6b_A	180	Crystal Structure Of Human Rab26 In Complex With A		7e-20
2fol_A	191	Crystal Structure Of Human Rab1a In Complex With Gd		8e-20
2ocy_C	170	Complex Of The Guanine Exchange Factor Sec2p And Th		8e-20
3tkl_A	196	Crystal Structure Of The Gtp-Bound Rab1a In Complex		9e-20
2rhd_A	175	Crystal Structure Of Cryptosporidium Parvum Small G		1e-19
2wwx_A	175	Crystal Structure Of The SidmDRRA(GEFGDF DOMAIN)-Ra		1e-19
3sfv_A	181	Crystal Structure Of The Gdp-Bound Rab1a S25n Mutan		1e-19
2f9l_A	199	3d Structure Of Inactive Human Rab11b Gtpase Length		1e-19
3l0i_B	199	Complex Structure Of Sidm/drra With The Wild Type R		1e-19
1g16_A	170	Crystal Structure Of Sec4-Gdp Length = 170		1e-19
2a78_A	187	Crystal Structure Of The C3bot-Rala Complex Reveals		2e-19
1uad_A	175	Crystal Structure Of The Rala-gppnhp-sec5 Ral-bindi		2e-19
2bov_A	206	Molecular Recognition Of An Adp-Ribosylating Clostr		3e-19
1yzk_A	184	Gppnhp Bound Rab11 Gtpase Length = 184		3e-19
1u8y_A	168	Crystal Structures Of Ral-Gppnhp And Ral-Gdp Reveal		3e-19
1oiv_A	191	X-Ray Structure Of The Small G Protein Rab11a In Co		4e-19
2efc_B	181	Ara7-GdpATVPS9A Length = 181		6e-19
2ew1_A	201	Crystal Structure Of Rab30 In Complex With A Gtp An		8e-19
3rab_A	169	Gppnhp-bound Rab3a At 2.0 A Resolution Length = 169		8e-19
1yzu_A	170	Gppnhp-Bound Rab21 Gtpase At 2.50 A Resolution Leng		1e-18
1z08_A	170	Gppnhp-Bound Rab21 Q53g Mutant Gtpase Length = 170		1e-18
1yzt_A	184	Gppnhp-Bound Rab21 Gtpase At 2.05 A Resolution Leng		2e-18
3tw8_B	181	Gef Domain Of Dennd 1b In Complex With Rab Gtpase R		2e-18
2hv8_A	172	Crystal Structure Of Gtp-Bound Rab11 In Complex Wit		2e-18
2bcg_Y	206	Structure Of Doubly Prenylated Ypt1:gdi Complex Len		2e-18
2if0_A	200	Crystal Structure Of Mouse Rab27b Bound To Gdp In M		2e-18
1ukv_Y	206	Structure Of Rabgdp-Dissociation Inhibitor In Compl		2e-18
1zc3_A	175	Crystal Structure Of The Ral-Binding Domain Of Exo8		2e-18
1wq1_R	166	Ras-Rasgap Complex Length = 166		2e-18
1rvd_A	166	H-Ras Complexed With Diaminobenzophenone-Beta,Gamma		2e-18
6q21_A	171	Molecular Switch For Signal Transduction: Structura		2e-18
2q21_A	171	Crystal Structures At 2.2 Angstroms Resolution Of T		2e-18
1yzn_A	185	Gppnhp-Bound Ypt1p Gtpase Length = 185		3e-18
3qbt_A	174	Crystal Structure Of Ocrl1 540-678 In Complex With		3e-18
2c5l_A	173	Structure Of Plc Epsilon Ras Association Domain Wit		3e-18
1z22_A	168	Gdp-Bound Rab23 Gtpase Crystallized In C222(1) Spac		3e-18
3v4f_A	166	H-Ras Peg 400CACL2, ORDERED OFF Length = 166		3e-18
2x1v_A	166	Crystal Structure Of The Activating H-Ras I163f Mut		3e-18
4efm_A	171	Crystal Structure Of H-Ras G12v In Complex With Gpp		3e-18
4efl_A	171	Crystal Structure Of H-Ras Wt In Complex With Gppnh		3e-18
2fu5_C	183	Structure Of Rab8 In Complex With Mss4 Length = 183		3e-18
2cld_X	166	Crystal Structure Analysis Of A Fluorescent Form Of		3e-18
2iez_A	220	Crystal Structure Of Mouse Rab27b Bound To Gdp In M		3e-18
1oiw_A	191	X-ray Structure Of The Small G Protein Rab11a In Co		4e-18
3lo5_A	166	Crystal Structure Of The Dominant Negative S17n Mut		4e-18
4q21_A	189	Molecular Switch For Signal Transduction: Structura		4e-18
2quz_A	166	Crystal Structure Of The Activating H-Rask117r Muta		5e-18
3ddc_A	166	Crystal Structure Of Nore1a In Complex With Ras Len		5e-18
2gzd_A	173	Crystal Structure Of Rab11 In Complex With Rab11-Fi		5e-18
1ek0_A	170	Gppnhp-Bound Ypt51 At 1.48 A Resolution Length = 17		5e-18
2d7c_A	167	Crystal Structure Of Human Rab11 In Complex With Fi		5e-18
1lfd_B	167	Crystal Structure Of The Active Ras Protein Complex		5e-18
1iaq_A	166	C-H-Ras P21 Protein Mutant With Thr 35 Replaced By		6e-18
3kkm_A	172	Crystal Structure Of H-Ras T35s In Complex With Gpp		7e-18
2iey_A	195	Crystal Structure Of Mouse Rab27b Bound To Gdp In H		7e-18
3k9n_A	166	Allosteric Modulation Of H-Ras Gtpase Length = 166		7e-18
1lf0_A	166	Crystal Structure Of Rasa59g In The Gtp-Bound Form		8e-18
521p_A	166	Three-Dimensional Structures Of H-Ras P21 Mutants:		8e-18
2zet_A	203	Crystal Structure Of The Small Gtpase Rab27b Comple		8e-18
221p_A	166	Three-Dimensional Structures Of H-Ras P21 Mutants:		8e-18
2rgb_A	166	Crystal Structure Of H-Rasq61k-Gppnhp Length = 166		9e-18
2ery_A	172	The Crystal Structure Of The Ras Related Protein Rr		9e-18
621p_A	166	Three-Dimensional Structures Of H-Ras P21 Mutants:		9e-18
2y8e_A	179	Crystal Structure Of D. Melanogaster Rab6 Gtpase Bo		1e-17
1xj0_A	166	Crystal Structure Of The Gdp-Bound Form Of The Rasg		1e-17
1xcm_A	167	Crystal Structure Of The Gppnhp-Bound H-Ras G60a Mu		1e-17
2fe4_A	171	The Crystal Structure Of Human Neuronal Rab6b In It		1e-17
3i3s_R	166	Crystal Structure Of H-Ras With Thr50 Replaced By I		1e-17
4fmc_F	117	Espg-Rab1 Complex Length = 117		2e-17
2gf9_A	189	Crystal Structure Of Human Rab3d In Complex With Gd		2e-17
1zw6_A	166	Crystal Structure Of The Gtp-Bound Form Of Rasq61g		2e-17
1zvq_A	166	Structure Of The Q61g Mutant Of Ras In The Gdp-Boun		2e-17
721p_A	166	Three-Dimensional Structures Of H-Ras P21 Mutants:		3e-17
3brw_D	167	Structure Of The Rap-Rapgap Complex Length = 167		3e-17
2rgc_A	166	Crystal Structure Of H-Rasq61v-Gppnhp Length = 166		3e-17
1zbd_A	203	Structural Basis Of Rab Effector Specificity: Cryst		3e-17
1nvv_Q	166	Structural Evidence For Feedback Activation By Rasg		3e-17
4epx_A	170	Discovery Of Small Molecules That Bind To K-Ras And		3e-17
4ept_A	170	Discovery Of Small Molecules That Bind To K-Ras And		3e-17
2rga_A	166	Crystal Structure Of H-Rasq61i-Gppnhp Length = 166		3e-17
2il1_A	192	Crystal Structure Of A Predicted Human Gtpase In Co		3e-17
4efn_A	171	Crystal Structure Of H-Ras Q61l In Complex With Gpp		3e-17
3dz8_A	191	Crystal Structure Of Human Rab3b Gtpase Bound With		4e-17
3con_A	190	Crystal Structure Of The Human Nras Gtpase Bound Wi		4e-17
1gua_A	167	Human Rap1a, Residues 1-167, Double Mutant (E30d,K3		4e-17
2cl0_X	166	Crystal Structure Analysis Of A Fluorescent Form Of		5e-17
2fg5_A	192	Crystal Structure Of Human Rab31 In Complex With A		5e-17
1ky2_A	182	Gppnhp-Bound Ypt7p At 1.6 A Resolution Length = 182		6e-17
1c1y_A	167	Crystal Structure Of Rap.Gmppnp In Complex With The		7e-17
3gft_A	187	Human K-Ras In Complex With A Gtp Analogue Length =		9e-17
1tu3_A	171	Crystal Structure Of Rab5 Complex With Rabaptin5 C-		1e-16
1n6h_A	170	Crystal Structure Of Human Rab5a Length = 170		1e-16
2gil_A	162	Structure Of The Extremely Slow Gtpase Rab6a In The		2e-16
2o52_A	200	Crystal Structure Of Human Rab4b In Complex With Gd		2e-16
3bc1_A	195	Crystal Structure Of The Complex Rab27a-slp2a Lengt		2e-16
1z07_A	166	Gppnhp-Bound Rab5c G55q Mutant Gtpase Length = 166		3e-16
1huq_A	164	1.8a Crystal Structure Of The Monomeric Gtpase Rab5		3e-16
4dxa_A	169	Co-Crystal Structure Of Rap1 In Complex With Krit1		4e-16
1n6p_A	170	Crystal Structure Of Human Rab5a A30e Mutant Comple		4e-16
1n6o_A	170	Crystal Structure Of Human Rab5a A30k Mutant Comple		4e-16
1n6n_A	170	Crystal Structure Of Human Rab5a A30r Mutant Comple		5e-16
1tu4_A	171	Crystal Structure Of Rab5-Gdp Complex Length = 171		5e-16
1n6r_A	170	Crystal Structure Of Human Rab5a A30l Mutant Comple		5e-16
1yzq_A	170	Gppnhp-Bound Rab6 Gtpase Length = 170		6e-16
1n6i_A	170	Crystal Structure Of Human Rab5a A30p Mutant Comple		6e-16
2a5j_A	191	Crystal Structure Of Human Rab2b Length = 191		6e-16
2hei_A	179	Crystal Structure Of Human Rab5b In Complex With Gd		7e-16
1z0f_A	179	Gdp-Bound Rab14 Gtpase Length = 179		8e-16
3cwz_A	188	Strucure Of Rab6(Gtp)-R6ip1 Complex Length = 188		9e-16
3mjh_A	168	Crystal Structure Of Human Rab5a In Complex With Th		1e-15
1z0a_A	174	Gdp-Bound Rab2a Gtpase Length = 174		1e-15
1z06_A	189	Gppnhp-Bound Rab33 Gtpase Length = 189		1e-15
2hup_A	201	Crystal Structure Of Human Rab43 In Complex With Gd		1e-15
3bbp_A	211	Rab6-Gtp:gcc185 Rab Binding Domain Complex Length =		2e-15
1x3s_A	195	Crystal Structure Of Human Rab18 In Complex With Gp		3e-15
1z0d_A	167	Gdp-bound Rab5c Gtpase Length = 167		4e-15
3cpj_B	223	Crystal Structure Of Ypt31 In Complex With Yeast Ra		4e-15
3bfk_A	181	Crystal Structure Of Plasmodium Falciparum Rab11a I		6e-15
4drz_A	196	Crystal Structure Of Human Rab14 Length = 196		6e-15
2p5s_A	199	Rab Domain Of Human Rasef In Complex With Gdp Lengt		7e-15
2g77_B	198	Crystal Structure Of Gyp1 Tbc Domain In Complex Wit		7e-15
4dkx_A	216	Crystal Structure Of The Rab 6a'(Q72l) Length = 216		9e-15
2erx_A	172	Crystal Structure Of Diras2 In Complex With Gdp And		1e-14
2bmd_A	186	High Resolution Structure Of Gdp-Bound Human Rab4a		1e-14
3tso_A	178	Structure Of The Cancer Associated Rab25 Protein In		1e-14
2bku_A	177	Kap95p:rangtp Complex Length = 177		1e-14
2fn4_A	181	The Crystal Structure Of Human Ras-Related Protein,		2e-14
2oil_A	193	Crystal Structure Of Human Rab25 In Complex With Gd		2e-14
1byu_A	216	Canine Gdp-Ran Length = 216		2e-14
1d5c_A	162	Crystal Structure Of Plasmodium Falciparum Rab6 Com		3e-14
1yu9_A	175	Gppnhp-Bound Rab4a Length = 175		5e-14
1qg4_A	216	Canine Gdp-Ran F72y Mutant Length = 216		6e-14
2atv_A	196	The Crystal Structure Of Human Rerg In The Gdp Boun		7e-14
1wa5_A	176	Crystal Structure Of The Exportin Cse1p Complexed W		1e-13
1rrp_A	204	Structure Of The Ran-Gppnhp-Ranbd1 Complex Length =		1e-13
3ea5_A	216	Kap95p Binding Induces The Switch Loops Of Rangdp T		2e-13
1a2k_C	216	Gdpran-Ntf2 Complex Length = 216		2e-13
3gj0_A	221	Crystal Structure Of Human Rangdp Length = 221		2e-13
1qbk_C	216	Structure Of The Karyopherin Beta2-ran Gppnhp Nucle		2e-13
1vg1_A	185	Gdp-bound Rab7 Length = 185		2e-13
1vg0_B	207	The Crystal Structures Of The Rep-1 Protein In Comp		2e-13
1z0k_A	172	Structure Of Gtp-Bound Rab4q67l Gtpase In Complex W		4e-13
3law_A	207	Structure Of Gtp-Bound L129f Mutant Rab7 Length = 2		5e-13
3kkp_A	183	Crystal Structure Of M-Ras P40d In Complex With Gpp		5e-13
1x1r_A	178	Crystal Structure Of M-Ras In Complex With Gdp Leng		5e-13
3oes_A	201	Crystal Structure Of The Small Gtpase Rhebl1 Length		6e-13
1qg2_A	216	Canine Gdp-Ran R76e Mutant Length = 216		8e-13
3kko_A	183	Crystal Structure Of M-Ras P40dD41EL51R IN COMPLEX		9e-13
1yvd_A	169	Gppnhp-Bound Rab22 Gtpase Length = 169		9e-13
3rwm_B	185	Crystal Structure Of Ypt32 In Complex With Gppnhp L		1e-12
3nc1_C	182	Crystal Structure Of The Crm1-Rangtp Complex Length		1e-12
3nby_C	176	Crystal Structure Of The Pki Nes-Crm1-Rangtp Nuclea		1e-12
1z0j_A	170	Structure Of Gtp-Bound Rab22q64l Gtpase In Complex		1e-12
3ran_A	216	Canine Gdp-Ran Q69l Mutant Length = 216		1e-12
3rap_R	167	The Small G Protein Rap2 In A Non Catalytic Complex		2e-12
1t91_A	207	Crystal Structure Of Human Small Gtpase Rab7(Gtp) L		2e-12
3pir_A	183	Crystal Structure Of M-Rasd41e In Complex With Gppn		2e-12
3gj4_A	221	Crystal Structure Of Human Rangdp-Nup153znf3 Comple		2e-12
2x19_A	172	Crystal Structure Of Importin13 - Rangtp Complex Le		4e-12
3icq_B	171	Karyopherin Nuclear State Length = 171		4e-12
3m1i_A	219	Crystal Structure Of Yeast Crm1 (Xpo1p) In Complex		5e-12
1xtq_A	177	Structure Of Small Gtpase Human Rheb In Complex Wit		8e-12
3t5g_A	181	Structure Of Fully Modified Farnesylated Rheb In Co		1e-11
2gf0_A	199	The Crystal Structure Of The Human Diras1 Gtpase In		1e-11
2l0x_A	169	Solution Structure Of The 21 Kda Gtpase Rheb Bound		3e-11
3sea_A	167	Structure Of Rheb-Y35a Mutant In Gdp- And Gmppnp-Bo		2e-10
2cjw_A	192	Crystal Structure Of The Small Gtpase Gem (Gemdndca		9e-10
2cjw_B	192	Crystal Structure Of The Small Gtpase Gem (Gemdndca		1e-09
2ht6_A	174	Crystal Structure Of Human Gem G-Domain Bound To Gd		2e-09
2g3y_A	211	Crystal Structure Of The Human Small Gtpase Gem Len		3e-09
3clv_A	208	Crystal Structure Of Rab5a From Plasmodium Falcipar		5e-09
4djt_A	218	Crystal Structure Of A Nuclear Gtp-Binding Protein		8e-09
2hxs_A	178	Crystal Structure Of Rab28a Gtpase In The Inactive		1e-08
3cbq_A	195	Crystal Structure Of The Human Rem2 Gtpase With Bou		9e-08
2nzj_A	175	The Crystal Structure Of Rem1 In Complex With Gdp L		5e-07
3q85_A	169	Crystal Structure Of Rem2 G-Domain -Gtp Analog Comp		1e-06
2gjs_A	176	The Crystal Structure Of Human Rrad In Complex With		2e-06
4aii_A	180	Crystal Structure Of The Rat Rem2 Gtpase - G Domain		3e-06
3d6t_B	171	Structure Of The Roc Domain From The Parkinson's Di		4e-06
2dpx_A	174	Crystal Structure Of Human Rad Gtpase Length = 174		5e-06
3q72_A	166	Crystal Structure Of Rad G-Domain-Gtp Analog Comple		5e-06
2zej_A	184	Structure Of The Roc Domain From The Parkinson's Di		5e-06
3c5c_A	187	Crystal Structure Of Human Ras-Like, Family 12 Prot		9e-05
2al7_A	186	Structure Of Human Adp-Ribosylation Factor-Like 10c		1e-04
2yc2_C	208	Intraflagellar Transport Complex 25-27 From Chlamyd		2e-04
1zd9_A	188	Structure Of Human Adp-Ribosylation Factor-Like 10b		4e-04
2h18_A	193	Structure Of Human Adp-Ribosylation Factor-Like 10b		5e-04

>pdb|3BWD|D Chain D, Crystal Structure Of The Plant Rho Protein Rop5 Length = 182

Iteration: 1
 Score =  357 bits (916), Expect = 2e-99,   Method: Compositional matrix adjust.
 Identities = 170/178 (95%), Positives = 176/178 (98%)
Query: 1   MSASRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWD 60
           MSASRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNG+TVNLGLWD
Sbjct: 3   MSASRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGATVNLGLWD 62
Query: 61  TAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKL 120
           TAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPI+LVGTKL
Sbjct: 63  TAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIVLVGTKL 122
Query: 121 DLRDDKQFFIDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQQNVKAVFDAAIRVVL 178
           DLRDDKQFFIDHPGAVPI+T QGEEL+KLIGAPAYIECSSK+Q+NVK VFDAAIRVVL
Sbjct: 123 DLRDDKQFFIDHPGAVPITTVQGEELKKLIGAPAYIECSSKSQENVKGVFDAAIRVVL 180

>pdb|2NTY|C Chain C, Rop4-Gdp-Prone8 Length = 180

Iteration: 1
 Score =  352 bits (902), Expect = 9e-98,   Method: Compositional matrix adjust.
 Identities = 167/178 (93%), Positives = 176/178 (98%)
Query: 1   MSASRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWD 60
           MSASRFIKCVTVGDGAVGKTC+LISYTSNTFPTDYVPTVFDNFSANVVV+G+TVNLGLWD
Sbjct: 1   MSASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGNTVNLGLWD 60
Query: 61  TAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKL 120
           TAGQEDYNRLRPLSYRGADVFILAFSLISKASYENV+KKWIPEL+HYAPGVPIILVGTKL
Sbjct: 61  TAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKL 120
Query: 121 DLRDDKQFFIDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQQNVKAVFDAAIRVVL 178
           DLRDDKQFFIDHPGAVPI+T QGEEL+KLIG+P YIECSSKTQQNVKAVFDAAI+VVL
Sbjct: 121 DLRDDKQFFIDHPGAVPITTNQGEELKKLIGSPIYIECSSKTQQNVKAVFDAAIKVVL 178

>pdb|2WBL|C Chain C, Three-Dimensional Structure Of A Binary Rop-Prone Complex Length = 180

Iteration: 1
 Score =  335 bits (858), Expect = 1e-92,   Method: Compositional matrix adjust.
 Identities = 156/178 (87%), Positives = 167/178 (93%)
Query: 1   MSASRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWD 60
           MS +RFIKCVTVGDGAVGKTC+LISYT NTFPTDYVPTVFDNFSANVVV+GSTVNLGLWD
Sbjct: 1   MSTARFIKCVTVGDGAVGKTCMLISYTGNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWD 60
Query: 61  TAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKL 120
           TAGQEDYNRLRPLSYRGADVF+LAFSLISKASYEN+ KKW+PELKHYAPG+PI+LVGTKL
Sbjct: 61  TAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENIHKKWLPELKHYAPGIPIVLVGTKL 120
Query: 121 DLRDDKQFFIDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQQNVKAVFDAAIRVVL 178
           DLRDDKQF  DHPGA  I+TAQGEELRK+IGA  Y+ECSSKTQQNVKAVFD AIRV L
Sbjct: 121 DLRDDKQFLKDHPGAASITTAQGEELRKMIGAVRYLECSSKTQQNVKAVFDTAIRVAL 178

>pdb|2J0V|A Chain A, The Crystal Structure Of Arabidopsis Thaliana Rac7-Rop9: The First Ras Superfamily Gtpase From The Plant Kingdom Length = 212

Iteration: 1
 Score =  299 bits (766), Expect = 5e-82,   Method: Compositional matrix adjust.
 Identities = 142/178 (79%), Positives = 157/178 (88%), Gaps = 2/178 (1%)
Query: 1   MSASRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWD 60
           MS S+FIKCVTVGDGAVGKTC+LI YTSN FPTDY+PTVFDNFSANV V+G  VNLGLWD
Sbjct: 4   MSVSKFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVAVDGQIVNLGLWD 63
Query: 61  TAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKL 120
           TAGQEDY+RLRPLSYRGAD+F+LAFSLISKASYENV KKW+PEL+ +AP VPI+LVGTKL
Sbjct: 64  TAGQEDYSRLRPLSYRGADIFVLAFSLISKASYENVLKKWMPELRRFAPNVPIVLVGTKL 123
Query: 121 DLRDDKQFFIDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQQNVKAVFDAAIRVVL 178
           DLRDDK +  DH     I++ QGEELRK IGA AYIECSSKTQQNVKAVFD AI+VVL
Sbjct: 124 DLRDDKGYLADHTNV--ITSTQGEELRKQIGAAAYIECSSKTQQNVKAVFDTAIKVVL 179

>pdb|2YIN|C Chain C, Structure Of The Complex Between Dock2 And Rac1. Length = 196

Iteration: 1
 Score =  236 bits (603), Expect = 5e-63,   Method: Compositional matrix adjust.
 Identities = 113/174 (64%), Positives = 134/174 (77%), Gaps = 2/174 (1%)
Query: 7   IKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQED 66
           IKCV VGDGAVGKTCLLISYT+N FP +Y+PTVFDN+SANV+V+G  VNLGLWDTAGQED
Sbjct: 23  IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQED 82
Query: 67  YNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLRDDK 126
           Y+RLRPLSY   DVF++ FSL+S AS+ENV  KW PE++H+ P  PIILVGTKLDLRDDK
Sbjct: 83  YDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDK 142
Query: 127 QFF--IDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQQNVKAVFDAAIRVVL 178
                +      PI+  QG  + K IGA  Y+ECS+ TQ+ +K VFD AIR VL
Sbjct: 143 DTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAVL 196

>pdb|1I4D|D Chain D, Crystal Structure Analysis Of Rac1-Gdp Complexed With Arfaptin (P21) Length = 192

Iteration: 1
 Score =  236 bits (602), Expect = 6e-63,   Method: Compositional matrix adjust.
 Identities = 113/174 (64%), Positives = 134/174 (77%), Gaps = 2/174 (1%)
Query: 7   IKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQED 66
           IKCV VGDGAVGKTCLLISYT+N FP +Y+PTVFDN+SANV+V+G  VNLGLWDTAGQED
Sbjct: 4   IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQED 63
Query: 67  YNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLRDDK 126
           Y+RLRPLSY   DVF++ FSL+S AS+ENV  KW PE++H+ P  PIILVGTKLDLRDDK
Sbjct: 64  YDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDK 123
Query: 127 QFF--IDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQQNVKAVFDAAIRVVL 178
                +      PI+  QG  + K IGA  Y+ECS+ TQ+ +K VFD AIR VL
Sbjct: 124 DTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAVL 177

>pdb|2FJU|A Chain A, Activated Rac1 Bound To Its Effector Phospholipase C Beta 2 Length = 178

Iteration: 1
 Score =  236 bits (602), Expect = 6e-63,   Method: Compositional matrix adjust.
 Identities = 113/174 (64%), Positives = 134/174 (77%), Gaps = 2/174 (1%)
Query: 7   IKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQED 66
           IKCV VGDGAVGKTCLLISYT+N FP +Y+PTVFDN+SANV+V+G  VNLGLWDTAGQED
Sbjct: 4   IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQED 63
Query: 67  YNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLRDDK 126
           Y+RLRPLSY   DVF++ FSL+S AS+ENV  KW PE++H+ P  PIILVGTKLDLRDDK
Sbjct: 64  YDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDK 123
Query: 127 QFF--IDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQQNVKAVFDAAIRVVL 178
                +      PI+  QG  + K IGA  Y+ECS+ TQ+ +K VFD AIR VL
Sbjct: 124 DTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAVL 177

>pdb|3SUA|A Chain A, Crystal Structure Of The Intracellular Domain Of Plexin-B1 In Complex With Rac1 Length = 184

Iteration: 1
 Score =  236 bits (601), Expect = 7e-63,   Method: Compositional matrix adjust.
 Identities = 113/174 (64%), Positives = 134/174 (77%), Gaps = 2/174 (1%)
Query: 7   IKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQED 66
           IKCV VGDGAVGKTCLLISYT+N FP +Y+PTVFDN+SANV+V+G  VNLGLWDTAGQED
Sbjct: 4   IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQED 63
Query: 67  YNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLRDDK 126
           Y+RLRPLSY   DVF++ FSL+S AS+ENV  KW PE++H+ P  PIILVGTKLDLRDDK
Sbjct: 64  YDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDK 123
Query: 127 QFF--IDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQQNVKAVFDAAIRVVL 178
                +      PI+  QG  + K IGA  Y+ECS+ TQ+ +K VFD AIR VL
Sbjct: 124 DTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAVL 177

>pdb|1FOE|B Chain B, Crystal Structure Of Rac1 In Complex With The Guanine Nucleotide Exchange Region Of Tiam1 Length = 177

Iteration: 1
 Score =  236 bits (601), Expect = 7e-63,   Method: Compositional matrix adjust.
 Identities = 113/174 (64%), Positives = 134/174 (77%), Gaps = 2/174 (1%)
Query: 7   IKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQED 66
           IKCV VGDGAVGKTCLLISYT+N FP +Y+PTVFDN+SANV+V+G  VNLGLWDTAGQED
Sbjct: 4   IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQED 63
Query: 67  YNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLRDDK 126
           Y+RLRPLSY   DVF++ FSL+S AS+ENV  KW PE++H+ P  PIILVGTKLDLRDDK
Sbjct: 64  YDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDK 123
Query: 127 QFF--IDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQQNVKAVFDAAIRVVL 178
                +      PI+  QG  + K IGA  Y+ECS+ TQ+ +K VFD AIR VL
Sbjct: 124 DTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAVL 177

>pdb|2VRW|A Chain A, Critical Structural Role For The Ph And C1 Domains Of The Vav1 Exchange Factor Length = 184

Iteration: 1
 Score =  236 bits (601), Expect = 8e-63,   Method: Compositional matrix adjust.
 Identities = 113/174 (64%), Positives = 134/174 (77%), Gaps = 2/174 (1%)
Query: 7   IKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQED 66
           IKCV VGDGAVGKTCLLISYT+N FP +Y+PTVFDN+SANV+V+G  VNLGLWDTAGQED
Sbjct: 4   IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQED 63
Query: 67  YNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLRDDK 126
           Y+RLRPLSY   DVF++ FSL+S AS+ENV  KW PE++H+ P  PIILVGTKLDLRDDK
Sbjct: 64  YDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDK 123
Query: 127 QFF--IDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQQNVKAVFDAAIRVVL 178
                +      PI+  QG  + K IGA  Y+ECS+ TQ+ +K VFD AIR VL
Sbjct: 124 DTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAVL 177

>pdb|3TH5|A Chain A, Crystal Structure Of Wild-Type Rac1 Length = 204

Iteration: 1
 Score =  235 bits (600), Expect = 9e-63,   Method: Compositional matrix adjust.
 Identities = 113/174 (64%), Positives = 134/174 (77%), Gaps = 2/174 (1%)
Query: 7   IKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQED 66
           IKCV VGDGAVGKTCLLISYT+N FP +Y+PTVFDN+SANV+V+G  VNLGLWDTAGQED
Sbjct: 31  IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQED 90
Query: 67  YNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLRDDK 126
           Y+RLRPLSY   DVF++ FSL+S AS+ENV  KW PE++H+ P  PIILVGTKLDLRDDK
Sbjct: 91  YDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDK 150
Query: 127 QFF--IDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQQNVKAVFDAAIRVVL 178
                +      PI+  QG  + K IGA  Y+ECS+ TQ+ +K VFD AIR VL
Sbjct: 151 DTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAVL 204

>pdb|3B13|B Chain B, Crystal Structure Of The Dhr-2 Domain Of Dock2 In Complex With Rac1 (T17n Mutant) Length = 184

Iteration: 1
 Score =  235 bits (599), Expect = 2e-62,   Method: Compositional matrix adjust.
 Identities = 113/179 (63%), Positives = 135/179 (75%), Gaps = 2/179 (1%)
Query: 2   SASRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWDT 61
           S  + IKCV VGDGAVGK CLLISYT+N FP +Y+PTVFDN+SANV+V+G  VNLGLWDT
Sbjct: 6   SGMQAIKCVVVGDGAVGKNCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDT 65
Query: 62  AGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLD 121
           AGQEDY+RLRPLSY   DVF++ FSL+S AS+ENV  KW PE++H+ P  PIILVGTKLD
Sbjct: 66  AGQEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLD 125
Query: 122 LRDDKQFF--IDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQQNVKAVFDAAIRVVL 178
           LRDDK     +      PI+  QG  + K IGA  Y+ECS+ TQ+ +K VFD AIR VL
Sbjct: 126 LRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAVL 184

>pdb|1HE1|C Chain C, Crystal Structure Of The Complex Between The Gap Domain Of The Pseudomonas Aeruginosa Exos Toxin And Human Rac Length = 176

Iteration: 1
 Score =  234 bits (596), Expect = 3e-62,   Method: Compositional matrix adjust.
 Identities = 112/173 (64%), Positives = 133/173 (76%), Gaps = 2/173 (1%)
Query: 7   IKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQED 66
           IKCV VGDGAVGKTCLLISYT+N FP +Y+PTVFDN+SANV+V+G  VNLGLWDTAGQED
Sbjct: 4   IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQED 63
Query: 67  YNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLRDDK 126
           Y+RLRPLSY   DVF++ FSL+S AS+ENV  KW PE++H+ P  PIILVGTKLDLRDDK
Sbjct: 64  YDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDK 123
Query: 127 QFF--IDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQQNVKAVFDAAIRVV 177
                +      PI+  QG  + K IGA  Y+ECS+ TQ+ +K VFD AIR V
Sbjct: 124 DTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAV 176

>pdb|4GZM|A Chain A, Crystal Structure Of Rac1 F28l Mutant Length = 204

Iteration: 1
 Score =  233 bits (595), Expect = 3e-62,   Method: Compositional matrix adjust.
 Identities = 112/174 (64%), Positives = 133/174 (76%), Gaps = 2/174 (1%)
Query: 7   IKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQED 66
           IKCV VGDGAVGKTCLLISYT+N  P +Y+PTVFDN+SANV+V+G  VNLGLWDTAGQED
Sbjct: 31  IKCVVVGDGAVGKTCLLISYTTNALPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQED 90
Query: 67  YNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLRDDK 126
           Y+RLRPLSY   DVF++ FSL+S AS+ENV  KW PE++H+ P  PIILVGTKLDLRDDK
Sbjct: 91  YDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDK 150
Query: 127 QFF--IDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQQNVKAVFDAAIRVVL 178
                +      PI+  QG  + K IGA  Y+ECS+ TQ+ +K VFD AIR VL
Sbjct: 151 DTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAVL 204

>pdb|1DS6|A Chain A, Crystal Structure Of A Rac-Rhogdi Complex Length = 192

Iteration: 1
 Score =  233 bits (594), Expect = 5e-62,   Method: Compositional matrix adjust.
 Identities = 112/174 (64%), Positives = 132/174 (75%), Gaps = 2/174 (1%)
Query: 7   IKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQED 66
           IKCV VGDGAVGKTCLLISYT+N FP +Y+PTVFDN+SANV+V+   VNLGLWDTAGQED
Sbjct: 4   IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDSKPVNLGLWDTAGQED 63
Query: 67  YNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLRDDK 126
           Y+RLRPLSY   DVF++ FSL+S ASYENV  KW PE++H+ P  PIILVGTKLDLRDDK
Sbjct: 64  YDRLRPLSYPQTDVFLICFSLVSPASYENVRAKWFPEVRHHCPSTPIILVGTKLDLRDDK 123
Query: 127 QFF--IDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQQNVKAVFDAAIRVVL 178
                +      PI+  QG  L K I +  Y+ECS+ TQ+ +K VFD AIR VL
Sbjct: 124 DTIEKLKEKKLAPITYPQGLALAKEIDSVKYLECSALTQRGLKTVFDEAIRAVL 177

>pdb|1I4T|D Chain D, Crystal Structure Analysis Of Rac1-Gmppnp In Complex With Arfaptin Length = 192

Iteration: 1
 Score =  233 bits (593), Expect = 6e-62,   Method: Compositional matrix adjust.
 Identities = 112/174 (64%), Positives = 133/174 (76%), Gaps = 2/174 (1%)
Query: 7   IKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQED 66
           IKCV VGDGAVGKTCLLISYT+N FP +Y+PTVFDN+SANV+V+G  VNLGLWDTAG ED
Sbjct: 4   IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGLED 63
Query: 67  YNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLRDDK 126
           Y+RLRPLSY   DVF++ FSL+S AS+ENV  KW PE++H+ P  PIILVGTKLDLRDDK
Sbjct: 64  YDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDK 123
Query: 127 QFF--IDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQQNVKAVFDAAIRVVL 178
                +      PI+  QG  + K IGA  Y+ECS+ TQ+ +K VFD AIR VL
Sbjct: 124 DTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAVL 177

>pdb|1E96|A Chain A, Structure Of The RacP67PHOX COMPLEX Length = 192

Iteration: 1
 Score =  233 bits (593), Expect = 6e-62,   Method: Compositional matrix adjust.
 Identities = 112/174 (64%), Positives = 133/174 (76%), Gaps = 2/174 (1%)
Query: 7   IKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQED 66
           IKCV VGDGAVGKTCLLISYT+N FP +Y+PTVFDN+SANV+V+G  VNLGLWDTAG ED
Sbjct: 4   IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGLED 63
Query: 67  YNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLRDDK 126
           Y+RLRPLSY   DVF++ FSL+S AS+ENV  KW PE++H+ P  PIILVGTKLDLRDDK
Sbjct: 64  YDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDK 123
Query: 127 QFF--IDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQQNVKAVFDAAIRVVL 178
                +      PI+  QG  + K IGA  Y+ECS+ TQ+ +K VFD AIR VL
Sbjct: 124 DTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAVL 177

>pdb|2H7V|A Chain A, Co-crystal Structure Of Ypka-rac1 Length = 188

Iteration: 1
 Score =  233 bits (593), Expect = 6e-62,   Method: Compositional matrix adjust.
 Identities = 112/174 (64%), Positives = 133/174 (76%), Gaps = 2/174 (1%)
Query: 7   IKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQED 66
           IKCV VGDGAVGKTCLLISYT+N FP +Y+PTVFDN+SANV+V+G  VNLGLWDTAGQED
Sbjct: 8   IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQED 67
Query: 67  YNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLRDDK 126
           Y+RLRPLSY   DV ++ FSL+S AS+ENV  KW PE++H+ P  PIILVGTKLDLRDDK
Sbjct: 68  YDRLRPLSYPQTDVSLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDK 127
Query: 127 QFF--IDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQQNVKAVFDAAIRVVL 178
                +      PI+  QG  + K IGA  Y+ECS+ TQ+ +K VFD AIR VL
Sbjct: 128 DTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAVL 181

>pdb|1HH4|A Chain A, Rac1-Rhogdi Complex Involved In Nadph Oxidase Activation Length = 192

Iteration: 1
 Score =  233 bits (593), Expect = 7e-62,   Method: Compositional matrix adjust.
 Identities = 112/174 (64%), Positives = 133/174 (76%), Gaps = 2/174 (1%)
Query: 7   IKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQED 66
           IKCV VGDGAVGKTCLLISYT+N FP +Y+PTVFDN+SANV+V+G  VNLGLWDTAGQED
Sbjct: 4   IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQED 63
Query: 67  YNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLRDDK 126
           Y+RLRPLSY   DV ++ FSL+S AS+ENV  KW PE++H+ P  PIILVGTKLDLRDDK
Sbjct: 64  YDRLRPLSYPQTDVSLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDK 123
Query: 127 QFF--IDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQQNVKAVFDAAIRVVL 178
                +      PI+  QG  + K IGA  Y+ECS+ TQ+ +K VFD AIR VL
Sbjct: 124 DTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAVL 177

>pdb|3RYT|C Chain C, The Plexin A1 Intracellular Region In Complex With Rac1 Length = 180

Iteration: 1
 Score =  233 bits (593), Expect = 7e-62,   Method: Compositional matrix adjust.
 Identities = 112/174 (64%), Positives = 133/174 (76%), Gaps = 2/174 (1%)
Query: 7   IKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQED 66
           IKCV VGDGAVGKTCLLISYT+N FP +Y+PTVFDN+SANV+V+G  VNLGLWDTAG ED
Sbjct: 7   IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGLED 66
Query: 67  YNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLRDDK 126
           Y+RLRPLSY   DVF++ FSL+S AS+ENV  KW PE++H+ P  PIILVGTKLDLRDDK
Sbjct: 67  YDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDK 126
Query: 127 QFF--IDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQQNVKAVFDAAIRVVL 178
                +      PI+  QG  + K IGA  Y+ECS+ TQ+ +K VFD AIR VL
Sbjct: 127 DTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAVL 180

>pdb|3SBD|A Chain A, Crystal Structure Of Rac1 P29s Mutant Length = 187

Iteration: 1
 Score =  233 bits (593), Expect = 8e-62,   Method: Compositional matrix adjust.
 Identities = 112/174 (64%), Positives = 133/174 (76%), Gaps = 2/174 (1%)
Query: 7   IKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQED 66
           IKCV VGDGAVGKTCLLISYT+N F  +Y+PTVFDN+SANV+V+G  VNLGLWDTAGQED
Sbjct: 14  IKCVVVGDGAVGKTCLLISYTTNAFSGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQED 73
Query: 67  YNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLRDDK 126
           Y+RLRPLSY   DVF++ FSL+S AS+ENV  KW PE++H+ P  PIILVGTKLDLRDDK
Sbjct: 74  YDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDK 133
Query: 127 QFF--IDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQQNVKAVFDAAIRVVL 178
                +      PI+  QG  + K IGA  Y+ECS+ TQ+ +K VFD AIR VL
Sbjct: 134 DTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAVL 187

>pdb|1G4U|R Chain R, Crystal Structure Of The Salmonella Tyrosine Phosphatase And Gtpase Activating Protein Sptp Bound To Rac1 Length = 184

Iteration: 1
 Score =  232 bits (592), Expect = 8e-62,   Method: Compositional matrix adjust.
 Identities = 112/174 (64%), Positives = 133/174 (76%), Gaps = 2/174 (1%)
Query: 7   IKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQED 66
           IKCV VGDGAVGKTCLLISYT+N FP +Y+PTVFDN+SANV+V+G  VNLGLWDTAGQED
Sbjct: 4   IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQED 63
Query: 67  YNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLRDDK 126
           Y+RLRPLSY   DV ++ FSL+S AS+ENV  KW PE++H+ P  PIILVGTKLDLRDDK
Sbjct: 64  YDRLRPLSYPQTDVSLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDK 123
Query: 127 QFF--IDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQQNVKAVFDAAIRVVL 178
                +      PI+  QG  + K IGA  Y+ECS+ TQ+ +K VFD AIR VL
Sbjct: 124 DTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAVL 177

>pdb|4GZL|A Chain A, Crystal Structure Of Rac1 Q61l Mutant Length = 204

Iteration: 1
 Score =  232 bits (592), Expect = 8e-62,   Method: Compositional matrix adjust.
 Identities = 112/174 (64%), Positives = 133/174 (76%), Gaps = 2/174 (1%)
Query: 7   IKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQED 66
           IKCV VGDGAVGKTCLLISYT+N FP +Y+PTVFDN+SANV+V+G  VNLGLWDTAG ED
Sbjct: 31  IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGLED 90
Query: 67  YNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLRDDK 126
           Y+RLRPLSY   DVF++ FSL+S AS+ENV  KW PE++H+ P  PIILVGTKLDLRDDK
Sbjct: 91  YDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDK 150
Query: 127 QFF--IDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQQNVKAVFDAAIRVVL 178
                +      PI+  QG  + K IGA  Y+ECS+ TQ+ +K VFD AIR VL
Sbjct: 151 DTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAVL 204

>pdb|1MH1|A Chain A, Small G-Protein Length = 186

Iteration: 1
 Score =  232 bits (592), Expect = 9e-62,   Method: Compositional matrix adjust.
 Identities = 112/178 (62%), Positives = 135/178 (75%), Gaps = 2/178 (1%)
Query: 3   ASRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWDTA 62
           + + IKCV VGDGAVGKTCLLISYT+N FP +Y+PTVFDN+SANV+V+G  VNLGLWDTA
Sbjct: 2   SPQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTA 61
Query: 63  GQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDL 122
           GQEDY+RLRPLSY   DV ++ FSL+S AS+ENV  KW PE++H+ P  PIILVGTKLDL
Sbjct: 62  GQEDYDRLRPLSYPQTDVSLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDL 121
Query: 123 RDDKQFF--IDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQQNVKAVFDAAIRVVL 178
           RDDK     +      PI+  QG  + K IGA  Y+ECS+ TQ+ +K VFD AIR VL
Sbjct: 122 RDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAVL 179

>pdb|2WKP|A Chain A, Structure Of A Photoactivatable Rac1 Containing Lov2 Wildtype Length = 332

Iteration: 1
 Score =  232 bits (591), Expect = 1e-61,   Method: Compositional matrix adjust.
 Identities = 111/179 (62%), Positives = 134/179 (74%), Gaps = 2/179 (1%)
Query: 2   SASRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWDT 61
           +A   IKCV VGDGAVGKTCLLISYT+N FP +Y+PTVFDN+SANV+V+G  VNLGLWDT
Sbjct: 151 AAKELIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDT 210
Query: 62  AGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLD 121
           AG EDY+RLRPLSY   DVF++ FSL+S AS+ +V  KW PE++H+ P  PIILVGTKLD
Sbjct: 211 AGLEDYDRLRPLSYPQTDVFLICFSLVSPASFHHVRAKWYPEVRHHCPNTPIILVGTKLD 270
Query: 122 LRDDKQFF--IDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQQNVKAVFDAAIRVVL 178
           LRDDK     +      PI+  QG  + K IGA  Y+ECS+ TQ+ +K VFD AIR VL
Sbjct: 271 LRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAVL 329

>pdb|2WKQ|A Chain A, Structure Of A Photoactivatable Rac1 Containing The Lov2 C450a Mutant Length = 332

Iteration: 1
 Score =  232 bits (591), Expect = 1e-61,   Method: Compositional matrix adjust.
 Identities = 111/179 (62%), Positives = 134/179 (74%), Gaps = 2/179 (1%)
Query: 2   SASRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWDT 61
           +A   IKCV VGDGAVGKTCLLISYT+N FP +Y+PTVFDN+SANV+V+G  VNLGLWDT
Sbjct: 151 AAKELIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDT 210
Query: 62  AGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLD 121
           AG EDY+RLRPLSY   DVF++ FSL+S AS+ +V  KW PE++H+ P  PIILVGTKLD
Sbjct: 211 AGLEDYDRLRPLSYPQTDVFLICFSLVSPASFHHVRAKWYPEVRHHCPNTPIILVGTKLD 270
Query: 122 LRDDKQFF--IDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQQNVKAVFDAAIRVVL 178
           LRDDK     +      PI+  QG  + K IGA  Y+ECS+ TQ+ +K VFD AIR VL
Sbjct: 271 LRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAVL 329

>pdb|2WKR|A Chain A, Structure Of A Photoactivatable Rac1 Containing The Lov2 C450m Mutant Length = 332

Iteration: 1
 Score =  232 bits (591), Expect = 1e-61,   Method: Compositional matrix adjust.
 Identities = 111/179 (62%), Positives = 134/179 (74%), Gaps = 2/179 (1%)
Query: 2   SASRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWDT 61
           +A   IKCV VGDGAVGKTCLLISYT+N FP +Y+PTVFDN+SANV+V+G  VNLGLWDT
Sbjct: 151 AAKELIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDT 210
Query: 62  AGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLD 121
           AG EDY+RLRPLSY   DVF++ FSL+S AS+ +V  KW PE++H+ P  PIILVGTKLD
Sbjct: 211 AGLEDYDRLRPLSYPQTDVFLICFSLVSPASFHHVRAKWYPEVRHHCPNTPIILVGTKLD 270
Query: 122 LRDDKQFF--IDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQQNVKAVFDAAIRVVL 178
           LRDDK     +      PI+  QG  + K IGA  Y+ECS+ TQ+ +K VFD AIR VL
Sbjct: 271 LRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAVL 329

>pdb|2G0N|A Chain A, The Crystal Structure Of The Human Rac3 In Complex With Gdp And Chloride Length = 179

Iteration: 1
 Score =  231 bits (590), Expect = 1e-61,   Method: Compositional matrix adjust.
 Identities = 110/174 (63%), Positives = 134/174 (77%), Gaps = 2/174 (1%)
Query: 7   IKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQED 66
           IKCV VGDGAVGKTCLLISYT+N FP +Y+PTVFDN+SANV+V+G  VNLGLWDTAGQED
Sbjct: 5   IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQED 64
Query: 67  YNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLRDDK 126
           Y+RLRPLSY   DVF++ FSL+S AS+ENV  KW PE++H+ P  PI+LVGTKLDLRDDK
Sbjct: 65  YDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPHTPILLVGTKLDLRDDK 124
Query: 127 QFF--IDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQQNVKAVFDAAIRVVL 178
                +      PI+  QG  + + IG+  Y+ECS+ TQ+ +K VFD AIR VL
Sbjct: 125 DTIERLRDKKLAPITYPQGLAMAREIGSVKYLECSALTQRGLKTVFDEAIRAVL 178

>pdb|2C2H|A Chain A, Crystal Structure Of The Human Rac3 In Complex With Gdp Length = 192

Iteration: 1
 Score =  231 bits (590), Expect = 2e-61,   Method: Compositional matrix adjust.
 Identities = 110/174 (63%), Positives = 134/174 (77%), Gaps = 2/174 (1%)
Query: 7   IKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQED 66
           IKCV VGDGAVGKTCLLISYT+N FP +Y+PTVFDN+SANV+V+G  VNLGLWDTAGQED
Sbjct: 4   IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQED 63
Query: 67  YNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLRDDK 126
           Y+RLRPLSY   DVF++ FSL+S AS+ENV  KW PE++H+ P  PI+LVGTKLDLRDDK
Sbjct: 64  YDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPHTPILLVGTKLDLRDDK 123
Query: 127 QFF--IDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQQNVKAVFDAAIRVVL 178
                +      PI+  QG  + + IG+  Y+ECS+ TQ+ +K VFD AIR VL
Sbjct: 124 DTIERLRDKKLAPITYPQGLAMAREIGSVKYLECSALTQRGLKTVFDEAIRAVL 177

>pdb|2IC5|A Chain A, Crystal Structure Of Human Rac3 Grown In The Presence Of Gpp(Nh)p. Length = 180

Iteration: 1
 Score =  231 bits (590), Expect = 2e-61,   Method: Compositional matrix adjust.
 Identities = 110/174 (63%), Positives = 134/174 (77%), Gaps = 2/174 (1%)
Query: 7   IKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQED 66
           IKCV VGDGAVGKTCLLISYT+N FP +Y+PTVFDN+SANV+V+G  VNLGLWDTAGQED
Sbjct: 5   IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQED 64
Query: 67  YNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLRDDK 126
           Y+RLRPLSY   DVF++ FSL+S AS+ENV  KW PE++H+ P  PI+LVGTKLDLRDDK
Sbjct: 65  YDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPHTPILLVGTKLDLRDDK 124
Query: 127 QFF--IDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQQNVKAVFDAAIRVVL 178
                +      PI+  QG  + + IG+  Y+ECS+ TQ+ +K VFD AIR VL
Sbjct: 125 DTIERLRDKKLAPITYPQGLAMAREIGSVKYLECSALTQRGLKTVFDEAIRAVL 178

>pdb|2W2T|A Chain A, Rac2 (G12v) In Complex With Gdp Length = 185

Iteration: 1
 Score =  229 bits (584), Expect = 7e-61,   Method: Compositional matrix adjust.
 Identities = 112/178 (62%), Positives = 133/178 (74%), Gaps = 2/178 (1%)
Query: 3   ASRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWDTA 62
            S+ IKCV VGD AVGKTCLLISYT+N FP +Y+PTVFDN+SANV+V+   VNLGLWDTA
Sbjct: 6   GSQAIKCVVVGDVAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDSKPVNLGLWDTA 65
Query: 63  GQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDL 122
           GQEDY+RLRPLSY   DVF++ FSL+S ASYENV  KW PE++H+ P  PIILVGTKLDL
Sbjct: 66  GQEDYDRLRPLSYPQTDVFLICFSLVSPASYENVRAKWFPEVRHHCPSTPIILVGTKLDL 125
Query: 123 RDDKQFF--IDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQQNVKAVFDAAIRVVL 178
           RDDK     +      PI+  QG  L K I +  Y+ECS+ TQ+ +K VFD AIR VL
Sbjct: 126 RDDKDTIEKLKEKKLAPITYPQGLALAKEIDSVKYLECSALTQRGLKTVFDEAIRAVL 183

>pdb|2W2V|A Chain A, Rac2 (G12v) In Complex With Gtpgs Length = 184

Iteration: 1
 Score =  228 bits (582), Expect = 1e-60,   Method: Compositional matrix adjust.
 Identities = 111/174 (63%), Positives = 131/174 (75%), Gaps = 2/174 (1%)
Query: 7   IKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQED 66
           IKCV VGD AVGKTCLLISYT+N FP +Y+PTVFDN+SANV+V+   VNLGLWDTAGQED
Sbjct: 11  IKCVVVGDVAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDSKPVNLGLWDTAGQED 70
Query: 67  YNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLRDDK 126
           Y+RLRPLSY   DVF++ FSL+S ASYENV  KW PE++H+ P  PIILVGTKLDLRDDK
Sbjct: 71  YDRLRPLSYPQTDVFLICFSLVSPASYENVRAKWFPEVRHHCPSTPIILVGTKLDLRDDK 130
Query: 127 QFF--IDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQQNVKAVFDAAIRVVL 178
                +      PI+  QG  L K I +  Y+ECS+ TQ+ +K VFD AIR VL
Sbjct: 131 DTIEKLKEKKLAPITYPQGLALAKEIDSVKYLECSALTQRGLKTVFDEAIRAVL 184

>pdb|1RYF|A Chain A, Alternative Splicing Of Rac1 Generates Rac1b, A Self-Activating Gtpase Length = 203

Iteration: 1
 Score =  228 bits (580), Expect = 2e-60,   Method: Compositional matrix adjust.
 Identities = 116/193 (60%), Positives = 137/193 (70%), Gaps = 21/193 (10%)
Query: 7   IKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQED 66
           IKCV VGDGAVGKTCLLISYT+N FP +Y+PTVFDN+SANV+V+G  VNLGLWDTAGQED
Sbjct: 6   IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQED 65
Query: 67  YNRLRPLSY--------------RG-----ADVFILAFSLISKASYENVSKKWIPELKHY 107
           Y+RLRPLSY              RG     ADVF++ FSL+S AS+ENV  KW PE++H+
Sbjct: 66  YDRLRPLSYPQTVGETYGKDITSRGKDKPIADVFLICFSLVSPASFENVRAKWYPEVRHH 125
Query: 108 APGVPIILVGTKLDLRDDKQFF--IDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQQN 165
            P  PIILVGTKLDLRDDK     +      PI+  QG  + K IGA  Y+ECS+ TQ+ 
Sbjct: 126 CPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRG 185
Query: 166 VKAVFDAAIRVVL 178
           +K VFD AIR VL
Sbjct: 186 LKTVFDEAIRAVL 198

>pdb|2ATX|A Chain A, Crystal Structure Of The Tc10 Gppnhp Complex Length = 194

Iteration: 1
 Score =  208 bits (530), Expect = 1e-54,   Method: Compositional matrix adjust.
 Identities = 96/175 (54%), Positives = 131/175 (74%), Gaps = 2/175 (1%)
Query: 6   FIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQE 65
            +KCV VGDGAVGKTCLL+SY ++ FP +YVPTVFD+++ +V V G    LGL+DTAGQE
Sbjct: 18  MLKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVFDHYAVSVTVGGKQYLLGLYDTAGQE 77
Query: 66  DYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLRDD 125
           DY+RLRPLSY   DVF++ FS+++ AS++NV ++W+PELK YAP VP +L+GT++DLRDD
Sbjct: 78  DYDRLRPLSYPMTDVFLICFSVVNPASFQNVKEEWVPELKEYAPNVPFLLIGTQIDLRDD 137
Query: 126 KQFF--IDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQQNVKAVFDAAIRVVL 178
            +    ++     PI   QG++L K IGA  Y+ECS+ TQ+ +K VFD AI  +L
Sbjct: 138 PKTLARLNDMKEKPICVEQGQKLAKEIGACCYVECSALTQKGLKTVFDEAIIAIL 192

>pdb|1AJE|A Chain A, Cdc42 From Human, Nmr, 20 Structures Length = 194

Iteration: 1
 Score =  207 bits (526), Expect = 4e-54,   Method: Compositional matrix adjust.
 Identities = 97/180 (53%), Positives = 130/180 (72%), Gaps = 2/180 (1%)
Query: 1   MSASRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWD 60
           +SA + IKCV VGDGAVGKTCLLISYT+N FP++YVPTVFDN++  V++ G    LGL+D
Sbjct: 5   ISAMQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFD 64
Query: 61  TAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKL 120
           TAGQEDY+RLRPLSY   DVF++ FS++S +S+ENV +KW+PE+ H+ P  P +LVGT++
Sbjct: 65  TAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQI 124
Query: 121 DLRDDKQFF--IDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQQNVKAVFDAAIRVVL 178
           DLRDD      +      PI+    E+L + + A  Y+ECS+ TQ+ +K VFD AI   L
Sbjct: 125 DLRDDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAILAAL 184

>pdb|3GCG|A Chain A, Crystal Structure Of Map And Cdc42 Complex Length = 182

Iteration: 1
 Score =  204 bits (520), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 96/178 (53%), Positives = 128/178 (71%), Gaps = 2/178 (1%)
Query: 3   ASRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWDTA 62
            S+ IKCV VGDGAVGKTCLLISYT+N FP++YVPTVFDN++  V++ G    LGL+DTA
Sbjct: 4   GSQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTA 63
Query: 63  GQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDL 122
           GQEDY+RLRPLSY   DVF++ FS++S +S+ENV +KW+PE+ H+ P  P +LVGT++DL
Sbjct: 64  GQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDL 123
Query: 123 RDDKQFF--IDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQQNVKAVFDAAIRVVL 178
           RDD      +      PI+    E+L + + A  Y+ECS+ TQ+ +K VFD AI   L
Sbjct: 124 RDDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAILAAL 181

>pdb|2WM9|B Chain B, Structure Of The Complex Between Dock9 And Cdc42. Length = 190

Iteration: 1
 Score =  204 bits (519), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 96/179 (53%), Positives = 128/179 (71%), Gaps = 2/179 (1%)
Query: 2   SASRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWDT 61
           S  + IKCV VGDGAVGKTCLLISYT+N FP++YVPTVFDN++  V++ G    LGL+DT
Sbjct: 1   SHMQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDT 60
Query: 62  AGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLD 121
           AGQEDY+RLRPLSY   DVF++ FS++S +S+ENV +KW+PE+ H+ P  P +LVGT++D
Sbjct: 61  AGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQID 120
Query: 122 LRDDKQFF--IDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQQNVKAVFDAAIRVVL 178
           LRDD      +      PI+    E+L + + A  Y+ECS+ TQ+ +K VFD AI   L
Sbjct: 121 LRDDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAILAAL 179

>pdb|2DFK|B Chain B, Crystal Structure Of The Cdc42-Collybistin Ii Complex Length = 194

Iteration: 1
 Score =  204 bits (519), Expect = 3e-53,   Method: Compositional matrix adjust.
 Identities = 96/179 (53%), Positives = 128/179 (71%), Gaps = 2/179 (1%)
Query: 2   SASRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWDT 61
           S  + IKCV VGDGAVGKTCLLISYT+N FP++YVPTVFDN++  V++ G    LGL+DT
Sbjct: 2   SHMQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDT 61
Query: 62  AGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLD 121
           AGQEDY+RLRPLSY   DVF++ FS++S +S+ENV +KW+PE+ H+ P  P +LVGT++D
Sbjct: 62  AGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQID 121
Query: 122 LRDDKQFF--IDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQQNVKAVFDAAIRVVL 178
           LRDD      +      PI+    E+L + + A  Y+ECS+ TQ+ +K VFD AI   L
Sbjct: 122 LRDDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAILAAL 180

>pdb|2ODB|A Chain A, The Crystal Structure Of Human Cdc42 In Complex With The Crib Domain Of Human P21-Activated Kinase 6 (Pak6) Length = 192

Iteration: 1
 Score =  204 bits (519), Expect = 3e-53,   Method: Compositional matrix adjust.
 Identities = 95/174 (54%), Positives = 126/174 (72%), Gaps = 2/174 (1%)
Query: 7   IKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQED 66
           IKCV VGDGAVGKTCLLISYT+N FP++YVPTVFDN++  V++ G    LGL+DTAGQED
Sbjct: 5   IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQED 64
Query: 67  YNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLRDDK 126
           Y+RLRPLSY   DVF++ FS++S +S+ENV +KW+PE+ H+ P  P +LVGT++DLRDD 
Sbjct: 65  YDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRDDP 124
Query: 127 QFF--IDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQQNVKAVFDAAIRVVL 178
                +      PI+    E+L + + A  Y+ECS+ TQ+ +K VFD AI   L
Sbjct: 125 STIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAILAAL 178

>pdb|1DOA|A Chain A, Structure Of The Rho Family Gtp-Binding Protein Cdc42 In Complex With The Multifunctional Regulator Rhogdi Length = 191

Iteration: 1
 Score =  204 bits (518), Expect = 3e-53,   Method: Compositional matrix adjust.
 Identities = 96/179 (53%), Positives = 128/179 (71%), Gaps = 2/179 (1%)
Query: 2   SASRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWDT 61
           S  + IKCV VGDGAVGKTCLLISYT+N FP++YVPTVFDN++  V++ G    LGL+DT
Sbjct: 2   SHMQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDT 61
Query: 62  AGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLD 121
           AGQEDY+RLRPLSY   DVF++ FS++S +S+ENV +KW+PE+ H+ P  P +LVGT++D
Sbjct: 62  AGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQID 121
Query: 122 LRDDKQFF--IDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQQNVKAVFDAAIRVVL 178
           LRDD      +      PI+    E+L + + A  Y+ECS+ TQ+ +K VFD AI   L
Sbjct: 122 LRDDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAILAAL 180

>pdb|4DID|A Chain A, Crystal Structure Of Salmonella Effector N-Terminal Domain Sopb In Complex With Cdc42 Length = 193

Iteration: 1
 Score =  204 bits (518), Expect = 3e-53,   Method: Compositional matrix adjust.
 Identities = 95/174 (54%), Positives = 126/174 (72%), Gaps = 2/174 (1%)
Query: 7   IKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQED 66
           IKCV VGDGAVGKTCLLISYT+N FP++YVPTVFDN++  V++ G    LGL+DTAGQED
Sbjct: 14  IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQED 73
Query: 67  YNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLRDDK 126
           Y+RLRPLSY   DVF++ FS++S +S+ENV +KW+PE+ H+ P  P +LVGT++DLRDD 
Sbjct: 74  YDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRDDP 133
Query: 127 QFF--IDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQQNVKAVFDAAIRVVL 178
                +      PI+    E+L + + A  Y+ECS+ TQ+ +K VFD AI   L
Sbjct: 134 STIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAILAAL 187

>pdb|2QRZ|A Chain A, Cdc42 Bound To Gmp-Pcp: Induced Fit By Effector Is Required Length = 189

Iteration: 1
 Score =  204 bits (518), Expect = 3e-53,   Method: Compositional matrix adjust.
 Identities = 95/174 (54%), Positives = 126/174 (72%), Gaps = 2/174 (1%)
Query: 7   IKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQED 66
           IKCV VGDGAVGKTCLLISYT+N FP++YVPTVFDN++  V++ G    LGL+DTAGQED
Sbjct: 4   IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQED 63
Query: 67  YNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLRDDK 126
           Y+RLRPLSY   DVF++ FS++S +S+ENV +KW+PE+ H+ P  P +LVGT++DLRDD 
Sbjct: 64  YDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRDDP 123
Query: 127 QFF--IDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQQNVKAVFDAAIRVVL 178
                +      PI+    E+L + + A  Y+ECS+ TQ+ +K VFD AI   L
Sbjct: 124 STIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAILAAL 177

>pdb|1KZ7|B Chain B, Crystal Structure Of The DhPH FRAGMENT OF MURINE DBS IN Complex With The Placental Isoform Of Human Cdc42 Length = 188

Iteration: 1
 Score =  204 bits (518), Expect = 3e-53,   Method: Compositional matrix adjust.
 Identities = 95/174 (54%), Positives = 126/174 (72%), Gaps = 2/174 (1%)
Query: 7   IKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQED 66
           IKCV VGDGAVGKTCLLISYT+N FP++YVPTVFDN++  V++ G    LGL+DTAGQED
Sbjct: 4   IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQED 63
Query: 67  YNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLRDDK 126
           Y+RLRPLSY   DVF++ FS++S +S+ENV +KW+PE+ H+ P  P +LVGT++DLRDD 
Sbjct: 64  YDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRDDP 123
Query: 127 QFF--IDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQQNVKAVFDAAIRVVL 178
                +      PI+    E+L + + A  Y+ECS+ TQ+ +K VFD AI   L
Sbjct: 124 STIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAILAAL 177

>pdb|1GRN|A Chain A, Crystal Structure Of The Cdc42CDC42GAPALF3 COMPLEX. Length = 191

Iteration: 1
 Score =  204 bits (518), Expect = 3e-53,   Method: Compositional matrix adjust.
 Identities = 95/174 (54%), Positives = 126/174 (72%), Gaps = 2/174 (1%)
Query: 7   IKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQED 66
           IKCV VGDGAVGKTCLLISYT+N FP++YVPTVFDN++  V++ G    LGL+DTAGQED
Sbjct: 4   IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQED 63
Query: 67  YNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLRDDK 126
           Y+RLRPLSY   DVF++ FS++S +S+ENV +KW+PE+ H+ P  P +LVGT++DLRDD 
Sbjct: 64  YDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRDDP 123
Query: 127 QFF--IDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQQNVKAVFDAAIRVVL 178
                +      PI+    E+L + + A  Y+ECS+ TQ+ +K VFD AI   L
Sbjct: 124 STIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAILAAL 177

>pdb|1EES|A Chain A, Solution Structure Of Cdc42hs Complexed With A Peptide Derived From P-21 Activated Kinase, Nmr, 20 Structures Length = 178

Iteration: 1
 Score =  204 bits (518), Expect = 3e-53,   Method: Compositional matrix adjust.
 Identities = 95/174 (54%), Positives = 126/174 (72%), Gaps = 2/174 (1%)
Query: 7   IKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQED 66
           IKCV VGDGAVGKTCLLISYT+N FP++YVPTVFDN++  V++ G    LGL+DTAGQED
Sbjct: 4   IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQED 63
Query: 67  YNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLRDDK 126
           Y+RLRPLSY   DVF++ FS++S +S+ENV +KW+PE+ H+ P  P +LVGT++DLRDD 
Sbjct: 64  YDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRDDP 123
Query: 127 QFF--IDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQQNVKAVFDAAIRVVL 178
                +      PI+    E+L + + A  Y+ECS+ TQ+ +K VFD AI   L
Sbjct: 124 STIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAILAAL 177

>pdb|1CEE|A Chain A, Solution Structure Of Cdc42 In Complex With The Gtpase Binding Domain Of Wasp Length = 179

Iteration: 1
 Score =  204 bits (518), Expect = 3e-53,   Method: Compositional matrix adjust.
 Identities = 95/174 (54%), Positives = 126/174 (72%), Gaps = 2/174 (1%)
Query: 7   IKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQED 66
           IKCV VGDGAVGKTCLLISYT+N FP++YVPTVFDN++  V++ G    LGL+DTAGQED
Sbjct: 4   IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQED 63
Query: 67  YNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLRDDK 126
           Y+RLRPLSY   DVF++ FS++S +S+ENV +KW+PE+ H+ P  P +LVGT++DLRDD 
Sbjct: 64  YDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRDDP 123
Query: 127 QFF--IDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQQNVKAVFDAAIRVVL 178
                +      PI+    E+L + + A  Y+ECS+ TQ+ +K VFD AI   L
Sbjct: 124 STIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAILAAL 177

>pdb|3EG5|A Chain A, Crystal Structure Of Mdia1-Tsh Gbd-Fh3 In Complex With Cdc42-Gmppnp Length = 178

Iteration: 1
 Score =  204 bits (518), Expect = 4e-53,   Method: Compositional matrix adjust.
 Identities = 95/174 (54%), Positives = 126/174 (72%), Gaps = 2/174 (1%)
Query: 7   IKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQED 66
           IKCV VGDGAVGKTCLLISYT+N FP++YVPTVFDN++  V++ G    LGL+DTAGQED
Sbjct: 4   IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQED 63
Query: 67  YNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLRDDK 126
           Y+RLRPLSY   DVF++ FS++S +S+ENV +KW+PE+ H+ P  P +LVGT++DLRDD 
Sbjct: 64  YDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRDDP 123
Query: 127 QFF--IDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQQNVKAVFDAAIRVVL 178
                +      PI+    E+L + + A  Y+ECS+ TQ+ +K VFD AI   L
Sbjct: 124 STIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQRGLKNVFDEAILAAL 177

>pdb|1GZS|A Chain A, Crystal Structure Of The Complex Between The Gef Domain Of The Salmonella Typhimurium Sope Toxin And Human Cdc42 Length = 180

Iteration: 1
 Score =  203 bits (517), Expect = 4e-53,   Method: Compositional matrix adjust.
 Identities = 95/174 (54%), Positives = 126/174 (72%), Gaps = 2/174 (1%)
Query: 7   IKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQED 66
           IKCV VGDGAVGKTCLLISYT+N FP++YVPTVFDN++  V++ G    LGL+DTAGQED
Sbjct: 6   IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQED 65
Query: 67  YNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLRDDK 126
           Y+RLRPLSY   DVF++ FS++S +S+ENV +KW+PE+ H+ P  P +LVGT++DLRDD 
Sbjct: 66  YDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRDDP 125
Query: 127 QFF--IDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQQNVKAVFDAAIRVVL 178
                +      PI+    E+L + + A  Y+ECS+ TQ+ +K VFD AI   L
Sbjct: 126 STIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAILAAL 179

>pdb|1AM4|D Chain D, Complex Between Cdc42hs.Gmppnp And P50 Rhogap (H. Sapiens) Length = 177

Iteration: 1
 Score =  203 bits (517), Expect = 5e-53,   Method: Compositional matrix adjust.
 Identities = 95/174 (54%), Positives = 126/174 (72%), Gaps = 2/174 (1%)
Query: 7   IKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQED 66
           IKCV VGDGAVGKTCLLISYT+N FP++YVPTVFDN++  V++ G    LGL+DTAGQED
Sbjct: 4   IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQED 63
Query: 67  YNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLRDDK 126
           Y+RLRPLSY   DVF++ FS++S +S+ENV +KW+PE+ H+ P  P +LVGT++DLRDD 
Sbjct: 64  YDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRDDP 123
Query: 127 QFF--IDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQQNVKAVFDAAIRVVL 178
                +      PI+    E+L + + A  Y+ECS+ TQ+ +K VFD AI   L
Sbjct: 124 STIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQRGLKNVFDEAILAAL 177

>pdb|1AN0|A Chain A, Cdc42hs-Gdp Complex Length = 190

Iteration: 1
 Score =  203 bits (516), Expect = 6e-53,   Method: Compositional matrix adjust.
 Identities = 95/174 (54%), Positives = 125/174 (71%), Gaps = 2/174 (1%)
Query: 7   IKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQED 66
           IKCV VGDGAVGKTCLLISYT+N FP++YVPTVFDN++  V + G    LGL+DTAGQED
Sbjct: 4   IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVXIGGEPYTLGLFDTAGQED 63
Query: 67  YNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLRDDK 126
           Y+RLRPLSY   DVF++ FS++S +S+ENV +KW+PE+ H+ P  P +LVGT++DLRDD 
Sbjct: 64  YDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRDDP 123
Query: 127 QFF--IDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQQNVKAVFDAAIRVVL 178
                +      PI+    E+L + + A  Y+ECS+ TQ+ +K VFD AI   L
Sbjct: 124 STIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAILAAL 177

>pdb|3QBV|A Chain A, Structure Of Designed Orthogonal Interaction Between Cdc42 And Nucleotide Exchange Domains Of Intersectin Length = 178

Iteration: 1
 Score =  202 bits (515), Expect = 8e-53,   Method: Compositional matrix adjust.
 Identities = 95/174 (54%), Positives = 125/174 (71%), Gaps = 2/174 (1%)
Query: 7   IKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQED 66
           IKCV VGDGAVGKTCLLISYT+N FP++YVPTVFDN++  V++ G    LGL DTAGQED
Sbjct: 4   IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLRDTAGQED 63
Query: 67  YNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLRDDK 126
           Y+RLRPLSY   DVF++ FS++S +S+ENV +KW+PE+ H+ P  P +LVGT++DLRDD 
Sbjct: 64  YDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRDDP 123
Query: 127 QFF--IDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQQNVKAVFDAAIRVVL 178
                +      PI+    E+L + + A  Y+ECS+ TQ+ +K VFD AI   L
Sbjct: 124 STIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAILAAL 177

>pdb|3VHL|B Chain B, Crystal Structure Of The Dhr-2 Domain Of Dock8 In Complex With Cdc42 (T17n Mutant) Length = 195

Iteration: 1
 Score =  202 bits (514), Expect = 9e-53,   Method: Compositional matrix adjust.
 Identities = 95/179 (53%), Positives = 127/179 (70%), Gaps = 2/179 (1%)
Query: 2   SASRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWDT 61
           S  + IKCV VGDGAVGK CLLISYT+N FP++YVPTVFDN++  V++ G    LGL+DT
Sbjct: 6   SGMQTIKCVVVGDGAVGKNCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDT 65
Query: 62  AGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLD 121
           AGQEDY+RLRPLSY   DVF++ FS++S +S+ENV +KW+PE+ H+ P  P +LVGT++D
Sbjct: 66  AGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQID 125
Query: 122 LRDDKQFF--IDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQQNVKAVFDAAIRVVL 178
           LRDD      +      PI+    E+L + + A  Y+ECS+ TQ+ +K VFD AI   L
Sbjct: 126 LRDDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAILAAL 184

>pdb|2KB0|A Chain A, Cdc42(T35a) Length = 178

Iteration: 1
 Score =  202 bits (513), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 94/174 (54%), Positives = 125/174 (71%), Gaps = 2/174 (1%)
Query: 7   IKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQED 66
           IKCV VGDGAVGKTCLLISYT+N FP++YVP VFDN++  V++ G    LGL+DTAGQED
Sbjct: 4   IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPAVFDNYAVTVMIGGEPYTLGLFDTAGQED 63
Query: 67  YNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLRDDK 126
           Y+RLRPLSY   DVF++ FS++S +S+ENV +KW+PE+ H+ P  P +LVGT++DLRDD 
Sbjct: 64  YDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRDDP 123
Query: 127 QFF--IDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQQNVKAVFDAAIRVVL 178
                +      PI+    E+L + + A  Y+ECS+ TQ+ +K VFD AI   L
Sbjct: 124 STIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAILAAL 177

>pdb|2ASE|A Chain A, Nmr Structure Of The F28l Mutant Of Cdc42hs Length = 178

Iteration: 1
 Score =  201 bits (512), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 94/174 (54%), Positives = 125/174 (71%), Gaps = 2/174 (1%)
Query: 7   IKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQED 66
           IKCV VGDGAVGKTCLLISYT+N  P++YVPTVFDN++  V++ G    LGL+DTAGQED
Sbjct: 4   IKCVVVGDGAVGKTCLLISYTTNKLPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQED 63
Query: 67  YNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLRDDK 126
           Y+RLRPLSY   DVF++ FS++S +S+ENV +KW+PE+ H+ P  P +LVGT++DLRDD 
Sbjct: 64  YDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRDDP 123
Query: 127 QFF--IDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQQNVKAVFDAAIRVVL 178
                +      PI+    E+L + + A  Y+ECS+ TQ+ +K VFD AI   L
Sbjct: 124 STIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAILAAL 177

>pdb|1A4R|B Chain B, G12v Mutant Of Human Placental Cdc42 Gtpase In The Gdp Form Length = 191

Iteration: 1
 Score =  201 bits (510), Expect = 3e-52,   Method: Compositional matrix adjust.
 Identities = 94/174 (54%), Positives = 125/174 (71%), Gaps = 2/174 (1%)
Query: 7   IKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQED 66
           IKCV VGD AVGKTCLLISYT+N FP++YVPTVFDN++  V++ G    LGL+DTAGQED
Sbjct: 4   IKCVVVGDVAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQED 63
Query: 67  YNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLRDDK 126
           Y+RLRPLSY   DVF++ FS++S +S+ENV +KW+PE+ H+ P  P +LVGT++DLRDD 
Sbjct: 64  YDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRDDP 123
Query: 127 QFF--IDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQQNVKAVFDAAIRVVL 178
                +      PI+    E+L + + A  Y+ECS+ TQ+ +K VFD AI   L
Sbjct: 124 STIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAILAAL 177

>pdb|1NF3|A Chain A, Structure Of Cdc42 In A Complex With The Gtpase-Binding Domain Of The Cell Polarity Protein, Par6 Length = 195

Iteration: 1
 Score =  201 bits (510), Expect = 3e-52,   Method: Compositional matrix adjust.
 Identities = 94/174 (54%), Positives = 125/174 (71%), Gaps = 2/174 (1%)
Query: 7   IKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQED 66
           IKCV VGDGAVGKTCLLISYT+N FP++YVPTVFDN++  V++ G    LGL+DTAG ED
Sbjct: 8   IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGLED 67
Query: 67  YNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLRDDK 126
           Y+RLRPLSY   DVF++ FS++S +S+ENV +KW+PE+ H+ P  P +LVGT++DLRDD 
Sbjct: 68  YDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRDDP 127
Query: 127 QFF--IDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQQNVKAVFDAAIRVVL 178
                +      PI+    E+L + + A  Y+ECS+ TQ+ +K VFD AI   L
Sbjct: 128 STIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAILAAL 181

>pdb|1CF4|A Chain A, Cdc42ACK GTPASE-Binding Domain Complex Length = 184

Iteration: 1
 Score =  200 bits (509), Expect = 3e-52,   Method: Compositional matrix adjust.
 Identities = 94/174 (54%), Positives = 125/174 (71%), Gaps = 2/174 (1%)
Query: 7   IKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQED 66
           IKCV VGDGAVGKTCLLISYT+N FP++YVPTVFDN++  V++ G    LGL+DTAG ED
Sbjct: 4   IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGLED 63
Query: 67  YNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLRDDK 126
           Y+RLRPLSY   DVF++ FS++S +S+ENV +KW+PE+ H+ P  P +LVGT++DLRDD 
Sbjct: 64  YDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRDDP 123
Query: 127 QFF--IDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQQNVKAVFDAAIRVVL 178
                +      PI+    E+L + + A  Y+ECS+ TQ+ +K VFD AI   L
Sbjct: 124 STIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAILAAL 177

>pdb|2Q3H|A Chain A, The Crystal Structure Of Rhoua In The Gdp-bound State Length = 201

Iteration: 1
 Score =  194 bits (492), Expect = 4e-50,   Method: Compositional matrix adjust.
 Identities = 91/170 (53%), Positives = 126/170 (74%), Gaps = 2/170 (1%)
Query: 7   IKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQED 66
           +KCV VGDGAVGKT L++SYT+N +PT+Y+PT FDNFSA V V+G  V L L DTAGQ++
Sbjct: 21  VKCVLVGDGAVGKTSLVVSYTTNGYPTEYIPTAFDNFSAVVSVDGRPVRLQLCDTAGQDE 80
Query: 67  YNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLRDDK 126
           +++LRPL Y   D+F+L FS++S +S++NVS+KW+PE++ + P  PIILVGT+ DLR+D 
Sbjct: 81  FDKLRPLCYTNTDIFLLCFSVVSPSSFQNVSEKWVPEIRCHCPKAPIILVGTQSDLREDV 140
Query: 127 QFFI--DHPGAVPISTAQGEELRKLIGAPAYIECSSKTQQNVKAVFDAAI 174
           +  I  D     P+     + L + I A +YIECS+ TQ+N+K VFDAAI
Sbjct: 141 KVLIELDKCKEKPVPEEAAKLLAEEIKAASYIECSALTQKNLKEVFDAAI 190

>pdb|1LB1|B Chain B, Crystal Structure Of The Dbl And Pleckstrin Homology Domains Of Dbs In Complex With Rhoa Length = 192

Iteration: 1
 Score =  187 bits (475), Expect = 3e-48,   Method: Compositional matrix adjust.
 Identities = 92/180 (51%), Positives = 122/180 (67%), Gaps = 3/180 (1%)
Query: 1   MSASRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWD 60
           M+A R  K V VGDGA GKTCLLI ++ + FP  YVPTVF+N+ A++ V+G  V L LWD
Sbjct: 3   MAAIR-KKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDGKQVELALWD 61
Query: 61  TAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKL 120
           TAGQEDY+RLRPLSY   DV ++ FS+ S  S EN+ +KW PE+KH+ P VPIILVG K 
Sbjct: 62  TAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKK 121
Query: 121 DLRDDK--QFFIDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQQNVKAVFDAAIRVVL 178
           DLR+D+  +  +      P+   +G ++   IGA  Y+ECS+KT+  V+ VF+ A R  L
Sbjct: 122 DLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAAL 181

>pdb|3TVD|A Chain A, Crystal Structure Of Mouse Rhoa-Gtp Complex Length = 193

Iteration: 1
 Score =  187 bits (475), Expect = 3e-48,   Method: Compositional matrix adjust.
 Identities = 92/180 (51%), Positives = 122/180 (67%), Gaps = 3/180 (1%)
Query: 1   MSASRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWD 60
           M+A R  K V VGDGA GKTCLLI ++ + FP  YVPTVF+N+ A++ V+G  V L LWD
Sbjct: 1   MAAIR-KKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDGKQVELALWD 59
Query: 61  TAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKL 120
           TAGQEDY+RLRPLSY   DV ++ FS+ S  S EN+ +KW PE+KH+ P VPIILVG K 
Sbjct: 60  TAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKK 119
Query: 121 DLRDDK--QFFIDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQQNVKAVFDAAIRVVL 178
           DLR+D+  +  +      P+   +G ++   IGA  Y+ECS+KT+  V+ VF+ A R  L
Sbjct: 120 DLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAAL 179

>pdb|3LW8|A Chain A, Shigella Ipgb2 In Complex With Human Rhoa, Gdp And Mg2+ (Complex A) Length = 185

Iteration: 1
 Score =  187 bits (475), Expect = 3e-48,   Method: Compositional matrix adjust.
 Identities = 91/179 (50%), Positives = 121/179 (67%), Gaps = 2/179 (1%)
Query: 2   SASRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWDT 61
           SA+   K V VGDGA GKTCLLI ++ + FP  YVPTVF+N+ A++ V+G  V L LWDT
Sbjct: 5   SAAIRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDT 64
Query: 62  AGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLD 121
           AGQEDY+RLRPLSY   DV ++ FS+ S  S EN+ +KW PE+KH+ P VPIILVG K D
Sbjct: 65  AGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKD 124
Query: 122 LRDDK--QFFIDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQQNVKAVFDAAIRVVL 178
           LR+D+  +  +      P+   +G ++   IGA  Y+ECS+KT+  V+ VF+ A R  L
Sbjct: 125 LRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAAL 183

>pdb|1S1C|A Chain A, Crystal Structure Of The Complex Between The Human Rhoa And Rho-Binding Domain Of Human Rocki Length = 183

Iteration: 1
 Score =  187 bits (475), Expect = 3e-48,   Method: Compositional matrix adjust.
 Identities = 92/180 (51%), Positives = 122/180 (67%), Gaps = 3/180 (1%)
Query: 1   MSASRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWD 60
           M+A R  K V VGDGA GKTCLLI ++ + FP  YVPTVF+N+ A++ V+G  V L LWD
Sbjct: 3   MAAIR-KKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDGKQVELALWD 61
Query: 61  TAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKL 120
           TAGQEDY+RLRPLSY   DV ++ FS+ S  S EN+ +KW PE+KH+ P VPIILVG K 
Sbjct: 62  TAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKK 121
Query: 121 DLRDDK--QFFIDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQQNVKAVFDAAIRVVL 178
           DLR+D+  +  +      P+   +G ++   IGA  Y+ECS+KT+  V+ VF+ A R  L
Sbjct: 122 DLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAAL 181

>pdb|1X86|B Chain B, Crystal Structure Of The DhPH DOMAINS OF LEUKEMIA-Associated Rhogef In Complex With Rhoa Length = 196

Iteration: 1
 Score =  187 bits (475), Expect = 3e-48,   Method: Compositional matrix adjust.
 Identities = 92/180 (51%), Positives = 122/180 (67%), Gaps = 3/180 (1%)
Query: 1   MSASRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWD 60
           M+A R  K V VGDGA GKTCLLI ++ + FP  YVPTVF+N+ A++ V+G  V L LWD
Sbjct: 4   MAAIR-KKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDGKQVELALWD 62
Query: 61  TAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKL 120
           TAGQEDY+RLRPLSY   DV ++ FS+ S  S EN+ +KW PE+KH+ P VPIILVG K 
Sbjct: 63  TAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKK 122
Query: 121 DLRDDK--QFFIDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQQNVKAVFDAAIRVVL 178
           DLR+D+  +  +      P+   +G ++   IGA  Y+ECS+KT+  V+ VF+ A R  L
Sbjct: 123 DLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAAL 182

>pdb|4F38|A Chain A, Crystal Structure Of Geranylgeranylated Rhoa In Complex With Rhogdi In Its Active Gppnhp-Bound Form Length = 195

Iteration: 1
 Score =  187 bits (475), Expect = 3e-48,   Method: Compositional matrix adjust.
 Identities = 92/180 (51%), Positives = 122/180 (67%), Gaps = 3/180 (1%)
Query: 1   MSASRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWD 60
           M+A R  K V VGDGA GKTCLLI ++ + FP  YVPTVF+N+ A++ V+G  V L LWD
Sbjct: 3   MAAIR-KKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDGKQVELALWD 61
Query: 61  TAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKL 120
           TAGQEDY+RLRPLSY   DV ++ FS+ S  S EN+ +KW PE+KH+ P VPIILVG K 
Sbjct: 62  TAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKK 121
Query: 121 DLRDDK--QFFIDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQQNVKAVFDAAIRVVL 178
           DLR+D+  +  +      P+   +G ++   IGA  Y+ECS+KT+  V+ VF+ A R  L
Sbjct: 122 DLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAAL 181

>pdb|3KZ1|E Chain E, Crystal Structure Of The Complex Of Pdz-Rhogef DhPH DOMAINS WITH GTP- Gamma-S Activated Rhoa Length = 182

Iteration: 1
 Score =  187 bits (475), Expect = 3e-48,   Method: Compositional matrix adjust.
 Identities = 92/180 (51%), Positives = 122/180 (67%), Gaps = 3/180 (1%)
Query: 1   MSASRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWD 60
           M+A R  K V VGDGA GKTCLLI ++ + FP  YVPTVF+N+ A++ V+G  V L LWD
Sbjct: 2   MAAIR-KKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDGKQVELALWD 60
Query: 61  TAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKL 120
           TAGQEDY+RLRPLSY   DV ++ FS+ S  S EN+ +KW PE+KH+ P VPIILVG K 
Sbjct: 61  TAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKK 120
Query: 121 DLRDDK--QFFIDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQQNVKAVFDAAIRVVL 178
           DLR+D+  +  +      P+   +G ++   IGA  Y+ECS+KT+  V+ VF+ A R  L
Sbjct: 121 DLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAAL 180

>pdb|1CC0|A Chain A, Crystal Structure Of The Rhoa.Gdp-Rhogdi Complex Length = 190

Iteration: 1
 Score =  186 bits (471), Expect = 8e-48,   Method: Compositional matrix adjust.
 Identities = 92/180 (51%), Positives = 121/180 (67%), Gaps = 3/180 (1%)
Query: 1   MSASRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWD 60
           M+A R  K V VGDGA GKTCLLI  + + FP  YVPTVF+N+ A++ V+G  V L LWD
Sbjct: 1   MAAIR-KKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVADIEVDGKQVELALWD 59
Query: 61  TAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKL 120
           TAGQEDY+RLRPLSY   DV ++ FS+ S  S EN+ +KW PE+KH+ P VPIILVG K 
Sbjct: 60  TAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKK 119
Query: 121 DLRDDK--QFFIDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQQNVKAVFDAAIRVVL 178
           DLR+D+  +  +      P+   +G ++   IGA  Y+ECS+KT+  V+ VF+ A R  L
Sbjct: 120 DLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAAL 179

>pdb|1OW3|B Chain B, Crystal Structure Of Rhoa.Gdp.Mgf3-In Complex With Rhogap Length = 193

Iteration: 1
 Score =  186 bits (471), Expect = 9e-48,   Method: Compositional matrix adjust.
 Identities = 92/180 (51%), Positives = 121/180 (67%), Gaps = 3/180 (1%)
Query: 1   MSASRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWD 60
           M+A R  K V VGDGA GKTCLLI  + + FP  YVPTVF+N+ A++ V+G  V L LWD
Sbjct: 1   MAAIR-KKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVADIEVDGKQVELALWD 59
Query: 61  TAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKL 120
           TAGQEDY+RLRPLSY   DV ++ FS+ S  S EN+ +KW PE+KH+ P VPIILVG K 
Sbjct: 60  TAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKK 119
Query: 121 DLRDDK--QFFIDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQQNVKAVFDAAIRVVL 178
           DLR+D+  +  +      P+   +G ++   IGA  Y+ECS+KT+  V+ VF+ A R  L
Sbjct: 120 DLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAAL 179

>pdb|3MSX|A Chain A, Crystal Structure Of Rhoa.Gdp.Mgf3 In Complex With Gap Domain Of Arhgap20 Length = 180

Iteration: 1
 Score =  185 bits (470), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 92/180 (51%), Positives = 121/180 (67%), Gaps = 3/180 (1%)
Query: 1   MSASRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWD 60
           M+A R  K V VGDGA GKTCLLI  + + FP  YVPTVF+N+ A++ V+G  V L LWD
Sbjct: 1   MAAIR-KKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVADIEVDGKQVELALWD 59
Query: 61  TAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKL 120
           TAGQEDY+RLRPLSY   DV ++ FS+ S  S EN+ +KW PE+KH+ P VPIILVG K 
Sbjct: 60  TAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKK 119
Query: 121 DLRDDK--QFFIDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQQNVKAVFDAAIRVVL 178
           DLR+D+  +  +      P+   +G ++   IGA  Y+ECS+KT+  V+ VF+ A R  L
Sbjct: 120 DLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAAL 179

>pdb|1TX4|B Chain B, RhoRHOGAPGDP(DOT)ALF4 COMPLEX Length = 177

Iteration: 1
 Score =  185 bits (470), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 89/173 (51%), Positives = 117/173 (67%), Gaps = 2/173 (1%)
Query: 8   KCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQEDY 67
           K V VGDGA GKTCLLI  + + FP  YVPTVF+N+ A++ V+G  V L LWDTAGQEDY
Sbjct: 5   KLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGQEDY 64
Query: 68  NRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLRDDK- 126
           +RLRPLSY   DV ++ FS+ S  S EN+ +KW PE+KH+ P VPIILVG K DLR+D+ 
Sbjct: 65  DRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEH 124
Query: 127 -QFFIDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQQNVKAVFDAAIRVVL 178
            +  +      P+   +G ++   IGA  Y+ECS+KT+  V+ VF+ A R  L
Sbjct: 125 TRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAAL 177

>pdb|1XCG|B Chain B, Crystal Structure Of Human Rhoa In Complex With DhPH Fragment Of Pdzrhogef Length = 178

Iteration: 1
 Score =  185 bits (470), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 89/173 (51%), Positives = 117/173 (67%), Gaps = 2/173 (1%)
Query: 8   KCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQEDY 67
           K V VGDGA GKTCLLI  + + FP  YVPTVF+N+ A++ V+G  V L LWDTAGQEDY
Sbjct: 5   KLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGQEDY 64
Query: 68  NRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLRDDK- 126
           +RLRPLSY   DV ++ FS+ S  S EN+ +KW PE+KH+ P VPIILVG K DLR+D+ 
Sbjct: 65  DRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEH 124
Query: 127 -QFFIDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQQNVKAVFDAAIRVVL 178
            +  +      P+   +G ++   IGA  Y+ECS+KT+  V+ VF+ A R  L
Sbjct: 125 TRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAAL 177

>pdb|2GCN|A Chain A, Crystal Structure Of The Human Rhoc-Gdp Complex Length = 201

Iteration: 1
 Score =  184 bits (468), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 88/173 (50%), Positives = 118/173 (68%), Gaps = 2/173 (1%)
Query: 8   KCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQEDY 67
           K V VGDGA GKTCLLI ++ + FP  YVPTVF+N+ A++ V+G  V L LWDTAGQEDY
Sbjct: 27  KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYIADIEVDGKQVELALWDTAGQEDY 86
Query: 68  NRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLRDDK- 126
           +RLRPLSY   DV ++ FS+ S  S EN+ +KW PE+KH+ P VPIILVG K DLR D+ 
Sbjct: 87  DRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRQDEH 146
Query: 127 -QFFIDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQQNVKAVFDAAIRVVL 178
            +  +      P+ + +G ++   I A  Y+ECS+KT++ V+ VF+ A R  L
Sbjct: 147 TRRELAKMKQEPVRSEEGRDMANRISAFGYLECSAKTKEGVREVFEMATRAGL 199

>pdb|2GCO|A Chain A, Crystal Structure Of The Human Rhoc-gppnhp Complex Length = 201

Iteration: 1
 Score =  184 bits (468), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 88/173 (50%), Positives = 118/173 (68%), Gaps = 2/173 (1%)
Query: 8   KCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQEDY 67
           K V VGDGA GKTCLLI ++ + FP  YVPTVF+N+ A++ V+G  V L LWDTAGQEDY
Sbjct: 27  KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYIADIEVDGKQVELALWDTAGQEDY 86
Query: 68  NRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLRDDK- 126
           +RLRPLSY   DV ++ FS+ S  S EN+ +KW PE+KH+ P VPIILVG K DLR D+ 
Sbjct: 87  DRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFXPNVPIILVGNKKDLRQDEH 146
Query: 127 -QFFIDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQQNVKAVFDAAIRVVL 178
            +  +      P+ + +G ++   I A  Y+ECS+KT++ V+ VF+ A R  L
Sbjct: 147 TRRELAKMKQEPVRSEEGRDMANRISAFGYLECSAKTKEGVREVFEMATRAGL 199

>pdb|1CXZ|A Chain A, Crystal Structure Of Human Rhoa Complexed With The Effector Domain Of The Protein Kinase PknPRK1 Length = 182

Iteration: 1
 Score =  184 bits (467), Expect = 3e-47,   Method: Compositional matrix adjust.
 Identities = 91/180 (50%), Positives = 121/180 (67%), Gaps = 3/180 (1%)
Query: 1   MSASRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWD 60
           M+A R  K V VGD A GKTCLLI ++ + FP  YVPTVF+N+ A++ V+G  V L LWD
Sbjct: 2   MAAIR-KKLVIVGDVACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDGKQVELALWD 60
Query: 61  TAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKL 120
           TAGQEDY+RLRPLSY   DV ++ FS+ S  S EN+ +KW PE+KH+ P VPIILVG K 
Sbjct: 61  TAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKK 120
Query: 121 DLRDDK--QFFIDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQQNVKAVFDAAIRVVL 178
           DLR+D+  +  +      P+   +G ++   IGA  Y+ECS+KT+  V+ VF+ A R  L
Sbjct: 121 DLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAAL 180

>pdb|2FV8|A Chain A, The Crystal Structure Of Rhob In The Gdp-Bound State Length = 207

Iteration: 1
 Score =  184 bits (466), Expect = 4e-47,   Method: Compositional matrix adjust.
 Identities = 88/173 (50%), Positives = 115/173 (66%), Gaps = 2/173 (1%)
Query: 8   KCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQEDY 67
           K V VGDGA GKTCLLI ++ + FP  YVPTVF+N+ A++ V+G  V L LWDTAGQEDY
Sbjct: 27  KLVVVGDGACGKTCLLIVFSKDEFPEVYVPTVFENYVADIEVDGKQVELALWDTAGQEDY 86
Query: 68  NRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLRDDKQ 127
           +RLRPLSY   DV ++ FS+ S  S EN+ +KW+PE+KH+ P VPIILV  K DLR D+ 
Sbjct: 87  DRLRPLSYPDTDVILMCFSVDSPDSLENIPEKWVPEVKHFCPNVPIILVANKKDLRSDEH 146
Query: 128 FFID--HPGAVPISTAQGEELRKLIGAPAYIECSSKTQQNVKAVFDAAIRVVL 178
              +       P+ T  G  +   I A  Y+ECS+KT++ V+ VF+ A R  L
Sbjct: 147 VRTELARMKQEPVRTDDGRAMAVRIQAYDYLECSAKTKEGVREVFETATRAAL 199

>pdb|1DPF|A Chain A, Crystal Structure Of A Mg-Free Form Of Rhoa Complexed With Gdp Length = 180

Iteration: 1
 Score =  183 bits (465), Expect = 4e-47,   Method: Compositional matrix adjust.
 Identities = 91/180 (50%), Positives = 120/180 (66%), Gaps = 3/180 (1%)
Query: 1   MSASRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWD 60
           M+A R  K V VGD A GKTCLLI ++ + FP  YVPTVF+N+ A++ V+G  V L LWD
Sbjct: 1   MAAIR-KKLVIVGDVACGKTCLLIVFSKDQFPAVYVPTVFENYVADIEVDGKQVELALWD 59
Query: 61  TAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKL 120
           TAGQEDY+R RPLSY   DV ++ FS+ S  S EN+ +KW PE+KH+ P VPIILVG K 
Sbjct: 60  TAGQEDYDRARPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKK 119
Query: 121 DLRDDKQFF--IDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQQNVKAVFDAAIRVVL 178
           DLR+D+     +      P+  A+G ++   IGA  Y+ECS+KT+  V+ VF+ A R  L
Sbjct: 120 DLRNDEHTARELAKMKQEPVKPAEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAAL 179

>pdb|1Z2C|A Chain A, Crystal Structure Of Mdia1 Gbd-Fh3 In Complex With Rhoc- Gmppnp Length = 193

Iteration: 1
 Score =  183 bits (464), Expect = 6e-47,   Method: Compositional matrix adjust.
 Identities = 88/173 (50%), Positives = 117/173 (67%), Gaps = 2/173 (1%)
Query: 8   KCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQEDY 67
           K V VGDGA GKTCLLI  + + FP  YVPTVF+N+ A++ V+G  V L LWDTAGQEDY
Sbjct: 7   KLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYIADIEVDGKQVELALWDTAGQEDY 66
Query: 68  NRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLRDDK- 126
           +RLRPLSY   DV ++ FS+ S  S EN+ +KW PE+KH+ P VPIILVG K DLR D+ 
Sbjct: 67  DRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRQDEH 126
Query: 127 -QFFIDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQQNVKAVFDAAIRVVL 178
            +  +      P+ + +G ++   I A  Y+ECS+KT++ V+ VF+ A R  L
Sbjct: 127 TRRELAKMKQEPVRSEEGRDMANRISAFGYLECSAKTKEGVREVFEMATRAGL 179

>pdb|3A58|B Chain B, Crystal Structure Of Sec3p - Rho1p Complex From Saccharomyces Cerevisiae Length = 188

Iteration: 1
 Score =  183 bits (464), Expect = 7e-47,   Method: Compositional matrix adjust.
 Identities = 91/173 (52%), Positives = 117/173 (67%), Gaps = 2/173 (1%)
Query: 8   KCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQEDY 67
           K V VGDGA GKTCLLI  +   FP  YVPTVF+N+ A+V V+G  V L LWDTAGQEDY
Sbjct: 12  KLVIVGDGACGKTCLLIVNSKGQFPEVYVPTVFENYVADVEVDGRRVELALWDTAGQEDY 71
Query: 68  NRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLRDDKQ 127
           +RLRPLSY  ++V ++ FS+    S ENV +KWI E+ H+  GVPIILVG K+DLR+D Q
Sbjct: 72  DRLRPLSYPDSNVVLICFSIDLPDSLENVQEKWIAEVLHFCQGVPIILVGCKVDLRNDPQ 131
Query: 128 FF--IDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQQNVKAVFDAAIRVVL 178
               +   G  P+++ +G+ +   IGA  Y ECS+KT   V+ VF+AA R  L
Sbjct: 132 TIEQLRQEGQQPVTSQEGQSVADQIGATGYYECSAKTGYGVREVFEAATRASL 184

>pdb|1KMQ|A Chain A, Crystal Structure Of A Constitutively Activated Rhoa Mutant (Q63l) Length = 184

Iteration: 1
 Score =  182 bits (461), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 88/173 (50%), Positives = 115/173 (66%), Gaps = 2/173 (1%)
Query: 8   KCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQEDY 67
           K V VGDGA GKTCLLI  + + FP  YVPTVF+N+ A++ V+G  V L LWDTAG EDY
Sbjct: 10  KLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGLEDY 69
Query: 68  NRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLRDDKQ 127
           +RLRPLSY   DV ++ FS+ S  S EN+ +KW PE+KH+ P VPIILVG K DLR+D+ 
Sbjct: 70  DRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEH 129
Query: 128 FF--IDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQQNVKAVFDAAIRVVL 178
               +      P+   +G ++   IGA  Y+ECS+KT+  V+ VF+ A R  L
Sbjct: 130 TRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAAL 182

>pdb|2J1L|A Chain A, Crystal Structure Of Human Rho-Related Gtp-Binding Protein Rhod Length = 214

Iteration: 1
 Score =  169 bits (427), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 80/176 (45%), Positives = 110/176 (62%), Gaps = 2/176 (1%)
Query: 5   RFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQ 64
           R +K V VGDG  GKT LL+ +    FP  Y PTVF+ +  N+ V G  V+L +WDTAGQ
Sbjct: 33  RSVKVVLVGDGGCGKTSLLMVFADGAFPESYTPTVFERYMVNLQVKGKPVHLHIWDTAGQ 92
Query: 65  EDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLRD 124
           +DY+RLRPL Y  A V +L F + S  S++N+  +W PE+ H+   VPII+VG K DLR 
Sbjct: 93  DDYDRLRPLFYPDASVLLLCFDVTSPNSFDNIFNRWYPEVNHFCKKVPIIVVGCKTDLRK 152
Query: 125 DKQFF--IDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQQNVKAVFDAAIRVVL 178
           DK     +   G  P++  +G+E+ + +GA AY+ECS++   NV AVF  A  V L
Sbjct: 153 DKSLVNKLRRNGLEPVTYHRGQEMARSVGAVAYLECSARLHDNVHAVFQEAAEVAL 208

>pdb|4DVG|A Chain A, Crystal Structure Of E. Histolytica Formin1 Bound To Ehrho1-Gtpgammas Length = 188

Iteration: 1
 Score =  157 bits (397), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 76/177 (42%), Positives = 113/177 (63%), Gaps = 8/177 (4%)
Query: 2   SASRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWDT 61
           +  + +K V VGDGAVGKTCLL++++    PT YVPTVF+NFS  +        L LWDT
Sbjct: 18  NGKKALKIVVVGDGAVGKTCLLLAFSKGEIPTAYVPTVFENFSHVMKYKNEEFILHLWDT 77
Query: 62  AGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLD 121
           AGQE+Y+RLRPLSY  +DV +L F++ ++ S++N+S KW PE+KHY      +LVG K+D
Sbjct: 78  AGQEEYDRLRPLSYADSDVVLLCFAVNNRTSFDNISTKWEPEIKHYIDTAKTVLVGLKVD 137
Query: 122 LRDDKQFFIDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQQNVKAVFDAAIRVVL 178
           LR D        G+  ++  +G++L + +G  AYIE SS  +  +  VF+ ++  + 
Sbjct: 138 LRKD--------GSDDVTKQEGDDLCQKLGCVAYIEASSVAKIGLNEVFEKSVDCIF 186

>pdb|3REF|B Chain B, Crystal Structure Of Ehrho1 Bound To Gdp And Magnesium Length = 194

Iteration: 1
 Score =  157 bits (396), Expect = 4e-39,   Method: Compositional matrix adjust.
 Identities = 76/177 (42%), Positives = 113/177 (63%), Gaps = 8/177 (4%)
Query: 2   SASRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWDT 61
           +  + +K V VGDGAVGKTCLL++++    PT YVPTVF+NFS  +        L LWDT
Sbjct: 19  NGKKALKIVVVGDGAVGKTCLLLAFSKGEIPTAYVPTVFENFSHVMKYKNEEFILHLWDT 78
Query: 62  AGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLD 121
           AGQE+Y+RLRPLSY  +DV +L F++ ++ S++N+S KW PE+KHY      +LVG K+D
Sbjct: 79  AGQEEYDRLRPLSYADSDVVLLCFAVNNRTSFDNISTKWEPEIKHYIDTAKTVLVGLKVD 138
Query: 122 LRDDKQFFIDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQQNVKAVFDAAIRVVL 178
           LR D        G+  ++  +G++L + +G  AYIE SS  +  +  VF+ ++  + 
Sbjct: 139 LRKD--------GSDDVTKQEGDDLCQKLGCVAYIEASSVAKIGLNEVFEKSVDCIF 187

>pdb|2V55|B Chain B, Mechanism Of Multi-site Phosphorylation From A Rock-i:rhoe Complex Structure Length = 200

Iteration: 1
 Score =  132 bits (333), Expect = 8e-32,   Method: Compositional matrix adjust.
 Identities = 66/178 (37%), Positives = 106/178 (59%), Gaps = 5/178 (2%)
Query: 1   MSASRFIKC--VTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGL 58
           M  ++ +KC  V VGD   GKT LL  +  + FP +YVPTVF+N++A+  ++   + L L
Sbjct: 16  MDPNQNVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYTASFEIDTQRIELSL 75
Query: 59  WDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGT 118
           WDT+G   Y+ +RPLSY  +D  ++ F +    + ++V KKW  E++ + P   ++LVG 
Sbjct: 76  WDTSGSPYYDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFCPNTKMLLVGC 135
Query: 119 KLDLRDDKQFFID--HPGAVPISTAQGEELRKLIGAPAYIECSS-KTQQNVKAVFDAA 173
           K DLR D    ++  +    P+S  QG  + K IGA  YIECS+ +++ +V+ +F  A
Sbjct: 136 KSDLRTDVSTLVELSNHRQTPVSYDQGANMAKQIGAATYIECSALQSENSVRDIFHVA 193

>pdb|1GWN|A Chain A, The Crystal Structure Of The Core Domain Of RhoeRND3 - A Constitutively Activated Small G Protein Length = 205

Iteration: 1
 Score =  132 bits (331), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 66/178 (37%), Positives = 106/178 (59%), Gaps = 5/178 (2%)
Query: 1   MSASRFIKC--VTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGL 58
           M  ++ +KC  V VGD   GKT LL  +  + FP +YVPTVF+N++A+  ++   + L L
Sbjct: 21  MDPNQNVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYTASFEIDTQRIELSL 80
Query: 59  WDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGT 118
           WDT+G   Y+ +RPLSY  +D  ++ F +    + ++V KKW  E++ + P   ++LVG 
Sbjct: 81  WDTSGSPYYDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFCPNTKMLLVGC 140
Query: 119 KLDLRDDKQFFID--HPGAVPISTAQGEELRKLIGAPAYIECSS-KTQQNVKAVFDAA 173
           K DLR D    ++  +    P+S  QG  + K IGA  YIECS+ +++ +V+ +F  A
Sbjct: 141 KSDLRTDVSTLVELSNHRQTPVSYDQGANMAKQIGAATYIECSALQSENSVRDIFHVA 198

>pdb|1M7B|A Chain A, Crystal Structure Of Rnd3RHOE: FUNCTIONAL IMPLICATIONS Length = 184

Iteration: 1
 Score =  131 bits (329), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 65/176 (36%), Positives = 106/176 (60%), Gaps = 5/176 (2%)
Query: 3   ASRFIKC--VTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWD 60
           +++ +KC  V VGD   GKT LL  +  + FP +YVPTVF+N++A+  ++   + L LWD
Sbjct: 2   SNQNVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYTASFEIDTQRIELSLWD 61
Query: 61  TAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKL 120
           T+G   Y+ +RPLSY  +D  ++ F +    + ++V KKW  E++ + P   ++LVG K 
Sbjct: 62  TSGSPYYDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFCPNTKMLLVGCKS 121
Query: 121 DLRDDKQFFID--HPGAVPISTAQGEELRKLIGAPAYIECSS-KTQQNVKAVFDAA 173
           DLR D    ++  +    P+S  QG  + K IGA  YIECS+ +++ +V+ +F  A
Sbjct: 122 DLRTDVSTLVELSNHRQTPVSYDQGANMAKQIGAATYIECSALQSENSVRDIFHVA 177

>pdb|2CLS|A Chain A, The Crystal Structure Of The Human Rnd1 Gtpase In The Active Gtp Bound State Length = 198

Iteration: 1
 Score =  117 bits (293), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 62/174 (35%), Positives = 95/174 (54%), Gaps = 3/174 (1%)
Query: 8   KCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQEDY 67
           K V VGD   GKT +L     + +P  YVPTVF+N++A +      V L LWDT+G   Y
Sbjct: 13  KLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENYTACLETEEQRVELSLWDTSGSPYY 72
Query: 68  NRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLRDDKQ 127
           + +RPL Y  +D  +L F +    + ++  KKW  E+  Y P   ++L+G K DLR D  
Sbjct: 73  DNVRPLCYSDSDAVLLCFDISRPETVDSALKKWRTEILDYCPSTRVLLIGCKTDLRTDLS 132
Query: 128 FFID--HPGAVPISTAQGEELRKLIGAPAYIECSSKT-QQNVKAVFDAAIRVVL 178
             ++  H    PIS  QG  + K +GA  Y+E S+ T ++++ ++F  A  + L
Sbjct: 133 TLMELSHQKQAPISYEQGCAIAKQLGAEIYLEGSAFTSEKSIHSIFRTASMLCL 186

>pdb|3Q3J|B Chain B, Crystal Structure Of Plexin A2 Rbd In Complex With Rnd1 Length = 214

Iteration: 1
 Score =  117 bits (292), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 62/174 (35%), Positives = 95/174 (54%), Gaps = 3/174 (1%)
Query: 8   KCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQEDY 67
           K V VGD   GKT +L     + +P  YVPTVF+N++A +      V L LWDT+G   Y
Sbjct: 29  KLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENYTACLETEEQRVELSLWDTSGSPYY 88
Query: 68  NRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLRDDKQ 127
           + +RPL Y  +D  +L F +    + ++  KKW  E+  Y P   ++L+G K DLR D  
Sbjct: 89  DNVRPLCYSDSDAVLLCFDISRPETVDSALKKWRTEILDYCPSTRVLLIGCKTDLRTDLS 148
Query: 128 FFID--HPGAVPISTAQGEELRKLIGAPAYIECSSKT-QQNVKAVFDAAIRVVL 178
             ++  H    PIS  QG  + K +GA  Y+E S+ T ++++ ++F  A  + L
Sbjct: 149 TLMELSHQKQAPISYEQGCAIAKQLGAEIYLEGSAFTSEKSIHSIFRTASMLCL 202

>pdb|2REX|B Chain B, Crystal Structure Of The Effector Domain Of Plxnb1 Bound With Rnd1 Gtpase Length = 197

Iteration: 1
 Score =  117 bits (292), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 62/174 (35%), Positives = 95/174 (54%), Gaps = 3/174 (1%)
Query: 8   KCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQEDY 67
           K V VGD   GKT +L     + +P  YVPTVF+N++A +      V L LWDT+G   Y
Sbjct: 12  KLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENYTACLETEEQRVELSLWDTSGSPYY 71
Query: 68  NRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLRDDKQ 127
           + +RPL Y  +D  +L F +    + ++  KKW  E+  Y P   ++L+G K DLR D  
Sbjct: 72  DNVRPLCYSDSDAVLLCFDISRPETVDSALKKWRTEILDYCPSTRVLLIGCKTDLRTDLS 131
Query: 128 FFID--HPGAVPISTAQGEELRKLIGAPAYIECSSKT-QQNVKAVFDAAIRVVL 178
             ++  H    PIS  QG  + K +GA  Y+E S+ T ++++ ++F  A  + L
Sbjct: 132 TLMELSHQKQAPISYEQGCAIAKQLGAEIYLEGSAFTSEKSIHSIFRTASMLCL 185

>pdb|1WMS|A Chain A, High Resolution Crystal Structure Of Human Rab9 Gtpase: A Novel Antiviral Drug Target Length = 177

Iteration: 1
 Score =  100 bits (248), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 60/181 (33%), Positives = 94/181 (51%), Gaps = 18/181 (9%)
Query: 4   SRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNF-SANVVVNGSTVNLGLWDTA 62
           S   K + +GDG VGK+ L+  Y +N F T    T+   F + ++ V+G  V + +WDTA
Sbjct: 5   SSLFKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTMQIWDTA 64
Query: 63  GQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYA-----PGVPIILVG 117
           GQE +  LR   YRG+D  +L FS+    S++N+S  W  E  +YA        P +++G
Sbjct: 65  GQERFRSLRTPFYRGSDCCLLTFSVDDSQSFQNLS-NWKKEFIYYADVKEPESFPFVILG 123
Query: 118 TKLDLRDDKQFFIDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQQNVKAVFDAAIRVV 177
            K+D+ + +           +ST + +   +  G   Y E S+K   NV A F+ A+R V
Sbjct: 124 NKIDISERQ-----------VSTEEAQAWCRDNGDYPYFETSAKDATNVAAAFEEAVRRV 172
Query: 178 L 178
           L
Sbjct: 173 L 173

>pdb|1S8F|A Chain A, Crystal Structure Of Rab9 Complexed To Gdp Reveals A Dimer With An Active Conformation Of Switch Ii Length = 177

Iteration: 1
 Score = 99.8 bits (247), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 60/181 (33%), Positives = 94/181 (51%), Gaps = 18/181 (9%)
Query: 4   SRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNF-SANVVVNGSTVNLGLWDTA 62
           S   K + +GDG VGK+ L+  Y +N F T    T+   F + ++ V+G  V + +WDTA
Sbjct: 7   SSLFKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTMQIWDTA 66
Query: 63  GQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYA-----PGVPIILVG 117
           GQE +  LR   YRG+D  +L FS+    S++N+S  W  E  +YA        P +++G
Sbjct: 67  GQERFRSLRTPFYRGSDCCLLTFSVDDSQSFQNLS-NWKKEFIYYADVKEPESFPFVILG 125
Query: 118 TKLDLRDDKQFFIDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQQNVKAVFDAAIRVV 177
            K+D+ + +           +ST + +   +  G   Y E S+K   NV A F+ A+R V
Sbjct: 126 NKIDISERQ-----------VSTEEAQAWCRDNGDYPYFETSAKDATNVAAAFEEAVRRV 174
Query: 178 L 178
           L
Sbjct: 175 L 175

>pdb|1YZL|A Chain A, Gppnhp-Bound Rab9 Gtpase Length = 179

Iteration: 1
 Score = 99.4 bits (246), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 59/181 (32%), Positives = 94/181 (51%), Gaps = 18/181 (9%)
Query: 4   SRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNF-SANVVVNGSTVNLGLWDTA 62
           S   K + +GDG VGK+ L+  Y +N F +    T+   F + ++ V+G  V + +WDTA
Sbjct: 9   SSLFKIILLGDGGVGKSSLMNRYVTNKFDSQLFHTIGVEFLNKDLEVDGHFVTMQIWDTA 68
Query: 63  GQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYA-----PGVPIILVG 117
           GQE +  LR   YRG+D  +L FS+    S++N+S  W  E  +YA        P +++G
Sbjct: 69  GQERFRSLRTPFYRGSDCCLLTFSVDDSQSFQNLS-NWKKEFIYYADVKEPESFPFVILG 127
Query: 118 TKLDLRDDKQFFIDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQQNVKAVFDAAIRVV 177
            K D+++ +           +ST + +   K  G   Y E S+K   NV A F+ A+R +
Sbjct: 128 NKTDIKERQ-----------VSTEEAQAWCKDNGDYPYFETSAKDSTNVAAAFEEAVRRI 176
Query: 178 L 178
           L
Sbjct: 177 L 177

>pdb|2OCB|A Chain A, Crystal Structure Of Human Rab9b In Complex With A Gtp Analogue Length = 180

Iteration: 1
 Score = 98.6 bits (244), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 61/181 (33%), Positives = 96/181 (53%), Gaps = 18/181 (9%)
Query: 4   SRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNF-SANVVVNGSTVNLGLWDTA 62
           S  +K + +GDG VGK+ L+  Y +N F +    T+   F + ++ V+G  V L +WDTA
Sbjct: 5   SLLLKVILLGDGGVGKSSLMNRYVTNKFDSQAFHTIGVEFLNRDLEVDGRFVTLQIWDTA 64
Query: 63  GQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYA-----PGVPIILVG 117
           GQE +  LR   YRGAD  +L FS+  + S+EN+   W  E  +YA        P +++G
Sbjct: 65  GQERFKSLRTPFYRGADCCLLTFSVDDRQSFENLG-NWQKEFIYYADVKDPEHFPFVVLG 123
Query: 118 TKLDLRDDKQFFIDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQQNVKAVFDAAIRVV 177
            K+D ++D+Q          ++T + +      G   Y+E S+K   NV   F+ A+R V
Sbjct: 124 NKVD-KEDRQ----------VTTEEAQTWCMENGDYPYLETSAKDDTNVTVAFEEAVRQV 172
Query: 178 L 178
           L
Sbjct: 173 L 173

>pdb|1AGP|A Chain A, Three-Dimensional Structures And Properties Of A Transforming And A Nontransforming Gly-12 Mutant Of P21-H-Ras Length = 166

Iteration: 1
 Score = 97.4 bits (241), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 58/172 (33%), Positives = 93/172 (54%), Gaps = 15/172 (8%)
Query: 8   KCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQEDY 67
           K V VG   VGK+ L I    N F  +Y PT+ D++   VV++G T  L + DTAGQE+Y
Sbjct: 5   KLVVVGADGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEY 64
Query: 68  NRLRPLSYRGADVFILAFSLISKASYENVS--KKWIPELKHYAPGVPIILVGTKLDLRDD 125
           + +R    R  + F+  F++ +  S+E++   ++ I  +K  +  VP++LVG K DL   
Sbjct: 65  SAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKD-SDDVPMVLVGNKCDL--- 120
Query: 126 KQFFIDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQQNVKAVFDAAIRVV 177
                    A  + + Q ++L +  G P YIE S+KT+Q V+  F   +R +
Sbjct: 121 --------AARTVESRQAQDLARSYGIP-YIETSAKTRQGVEDAFYTLVREI 163

>pdb|421P|A Chain A, Three-Dimensional Structures Of H-Ras P21 Mutants: Molecular Basis For Their Inability To Function As Signal Switch Molecules Length = 166

Iteration: 1
 Score = 97.1 bits (240), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 58/172 (33%), Positives = 93/172 (54%), Gaps = 15/172 (8%)
Query: 8   KCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQEDY 67
           K V VG   VGK+ L I    N F  +Y PT+ D++   VV++G T  L + DTAGQE+Y
Sbjct: 5   KLVVVGARGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEY 64
Query: 68  NRLRPLSYRGADVFILAFSLISKASYENVS--KKWIPELKHYAPGVPIILVGTKLDLRDD 125
           + +R    R  + F+  F++ +  S+E++   ++ I  +K  +  VP++LVG K DL   
Sbjct: 65  SAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKD-SDDVPMVLVGNKCDL--- 120
Query: 126 KQFFIDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQQNVKAVFDAAIRVV 177
                    A  + + Q ++L +  G P YIE S+KT+Q V+  F   +R +
Sbjct: 121 --------AARTVESRQAQDLARSYGIP-YIETSAKTRQGVEDAFYTLVREI 163

>pdb|1CLU|A Chain A, H-Ras Complexed With Diaminobenzophenone-Beta,Gamma-Imido- Gtp Length = 166

Iteration: 1
 Score = 96.3 bits (238), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 58/172 (33%), Positives = 93/172 (54%), Gaps = 15/172 (8%)
Query: 8   KCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQEDY 67
           K V VG   VGK+ L I    N F  +Y PT+ D++   VV++G T  L + DTAGQE+Y
Sbjct: 5   KLVVVGAPGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEY 64
Query: 68  NRLRPLSYRGADVFILAFSLISKASYENVS--KKWIPELKHYAPGVPIILVGTKLDLRDD 125
           + +R    R  + F+  F++ +  S+E++   ++ I  +K  +  VP++LVG K DL   
Sbjct: 65  SAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKD-SDDVPMVLVGNKCDL--- 120
Query: 126 KQFFIDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQQNVKAVFDAAIRVV 177
                    A  + + Q ++L +  G P YIE S+KT+Q V+  F   +R +
Sbjct: 121 --------AARTVESRQAQDLARSYGIP-YIETSAKTRQGVEDAFYTLVREI 163

>pdb|2EQB|A Chain A, Crystal Structure Of The Rab Gtpase Sec4p, The Sec2p Gef Domain, And Phosphate Complex Length = 174

Iteration: 1
 Score = 95.5 bits (236), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 55/170 (32%), Positives = 87/170 (51%), Gaps = 15/170 (8%)
Query: 3   ASRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVV-VNGSTVNLGLWDT 61
            S  +K + +GD  VGK+CLL+ +  + F   ++ T+  +F    V +NG  V L LWDT
Sbjct: 4   GSSIMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQLWDT 63
Query: 62  AGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPG-VPIILVGTKL 120
           AGQE +  +    YRGA   IL + +  + ++ N+ K+W   +  +A     ++LVG K 
Sbjct: 64  AGQERFRTITTAYYRGAMGIILVYDVTDERTFTNI-KQWFKTVNEHANDEAQLLLVGNKS 122
Query: 121 DLRDDKQFFIDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQQNVKAVF 170
           D+               ++  QGE L K +G P +IE S+K   NV  +F
Sbjct: 123 DME-----------TRVVTADQGEALAKELGIP-FIESSAKNDDNVNEIF 160

>pdb|1JAH|A Chain A, H-Ras P21 Protein Mutant G12p, Complexed With Guanosine-5'- [beta,Gamma-Methylene] Triphosphate And Magnesium Length = 166

Iteration: 1
 Score = 94.7 bits (234), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 57/172 (33%), Positives = 92/172 (53%), Gaps = 15/172 (8%)
Query: 8   KCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQEDY 67
           K V VG   VGK+ L I    N F  +Y PT+ D++   VV++G T  L + DTAGQE+Y
Sbjct: 5   KLVVVGAPGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEY 64
Query: 68  NRLRPLSYRGADVFILAFSLISKASYENVS--KKWIPELKHYAPGVPIILVGTKLDLRDD 125
           + +R    R  + F+  F++ +  S+E++   ++ I  +K  +  VP++LVG K DL   
Sbjct: 65  SAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKD-SDDVPMVLVGNKCDL--- 120
Query: 126 KQFFIDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQQNVKAVFDAAIRVV 177
                       + + Q ++L +  G P YIE S+KT+Q V+  F   +R +
Sbjct: 121 --------AGRTVESRQAQDLARSYGIP-YIETSAKTRQGVEDAFYTLVREI 163

>pdb|4I1O|A Chain A, Crystal Structure Of The Legionella Pneumophila Gap Domain Of Lepb In Complex With Rab1b Bound To Gdp And Bef3 Length = 181

Iteration: 1
 Score = 94.7 bits (234), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 56/167 (33%), Positives = 89/167 (53%), Gaps = 14/167 (8%)
Query: 6   FIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVV-VNGSTVNLGLWDTAGQ 64
             K + +GD  VGK+CLL+ +  +T+   Y+ T+  +F    + ++G T+ L +WDTAGQ
Sbjct: 9   LFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQ 68
Query: 65  EDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYA-PGVPIILVGTKLDLR 123
           E +  +    YRGA   I+ + +  + SY NV K+W+ E+  YA   V  +LVG K DL 
Sbjct: 69  ERFRTITSSYYRGAHGIIVVYDVTDQESYANV-KQWLQEIDRYASENVNKLLVGNKSDLT 127
Query: 124 DDKQFFIDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQQNVKAVF 170
             K   +D+  A        +E    +G P ++E S+K   NV+  F
Sbjct: 128 TKK--VVDNTTA--------KEFADSLGIP-FLETSAKNATNVEQAF 163

>pdb|3JZA|A Chain A, Crystal Structure Of Human Rab1b In Complex With The Gef Domain Of DrraSIDM FROM LEGIONELLA PNEUMOPHILA Length = 175

Iteration: 1
 Score = 94.7 bits (234), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 56/167 (33%), Positives = 89/167 (53%), Gaps = 14/167 (8%)
Query: 6   FIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVV-VNGSTVNLGLWDTAGQ 64
             K + +GD  VGK+CLL+ +  +T+   Y+ T+  +F    + ++G T+ L +WDTAGQ
Sbjct: 9   LFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQ 68
Query: 65  EDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYA-PGVPIILVGTKLDLR 123
           E +  +    YRGA   I+ + +  + SY NV K+W+ E+  YA   V  +LVG K DL 
Sbjct: 69  ERFRTITSSYYRGAHGIIVVYDVTDQESYANV-KQWLQEIDRYASENVNKLLVGNKSDLT 127
Query: 124 DDKQFFIDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQQNVKAVF 170
             K   +D+  A        +E    +G P ++E S+K   NV+  F
Sbjct: 128 TKK--VVDNTTA--------KEFADSLGIP-FLETSAKNATNVEQAF 163

>pdb|3CPH|A Chain A, Crystal Structure Of Sec4 In Complex With Rab-Gdi Length = 213

Iteration: 1
 Score = 94.4 bits (233), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 55/171 (32%), Positives = 87/171 (50%), Gaps = 15/171 (8%)
Query: 2   SASRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVV-VNGSTVNLGLWD 60
           S    +K + +GD  VGK+CLL+ +  + F   ++ T+  +F    V +NG  V L LWD
Sbjct: 16  SYDSIMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQLWD 75
Query: 61  TAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPG-VPIILVGTK 119
           TAGQE +  +    YRGA   IL + +  + ++ N+ K+W   +  +A     ++LVG K
Sbjct: 76  TAGQERFRTITTAYYRGAMGIILVYDVTDERTFTNI-KQWFKTVNEHANDEAQLLLVGNK 134
Query: 120 LDLRDDKQFFIDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQQNVKAVF 170
            D+               ++  QGE L K +G P +IE S+K   NV  +F
Sbjct: 135 SDME-----------TRVVTADQGEALAKELGIP-FIESSAKNDDNVNEIF 173

>pdb|2F7S|A Chain A, The Crystal Structure Of Human Rab27b Bound To Gdp Length = 217

Iteration: 1
 Score = 94.4 bits (233), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 64/186 (34%), Positives = 93/186 (50%), Gaps = 25/186 (13%)
Query: 6   FIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVV------NGST-----V 54
            IK + +GD  VGKT  L  YT N F   ++ TV  +F    VV      NGS+     V
Sbjct: 25  LIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYNAQGPNGSSGKAFKV 84
Query: 55  NLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELK--HYAPGVP 112
           +L LWDTAGQE +  L    +R A  F+L F L S+ S+ NV + W+ +L+   Y     
Sbjct: 85  HLQLWDTAGQERFRSLTTAFFRDAMGFLLMFDLTSQQSFLNV-RNWMSQLQANAYCENPD 143
Query: 113 IILVGTKLDLRDDKQFFIDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQQNVKAVFDA 172
           I+L+G K DL D ++          ++  Q  EL    G P Y E S+ T QNV+   + 
Sbjct: 144 IVLIGNKADLPDQRE----------VNERQARELADKYGIP-YFETSAATGQNVEKAVET 192
Query: 173 AIRVVL 178
            + +++
Sbjct: 193 LLDLIM 198

>pdb|4DSO|A Chain A, Small-Molecule Ligands Bind To A Distinct Pocket In Ras And Inhibit Sos-Mediated Nucleotide Exchange Activity Length = 189

Iteration: 1
 Score = 94.0 bits (232), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 58/172 (33%), Positives = 92/172 (53%), Gaps = 15/172 (8%)
Query: 8   KCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQEDY 67
           K V VG   VGK+ L I    N F  +Y PT+ D++   VV++G T  L + DTAGQE+Y
Sbjct: 6   KLVVVGADGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEY 65
Query: 68  NRLRPLSYRGADVFILAFSLISKASYENVS--KKWIPELKHYAPGVPIILVGTKLDLRDD 125
           + +R    R  + F+  F++ +  S+E++   ++ I  +K  +  VP++LVG K DL   
Sbjct: 66  SAMRDQYMRTGEGFLCVFAINNTKSFEDIHHYREQIKRVKD-SEDVPMVLVGNKCDL--- 121
Query: 126 KQFFIDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQQNVKAVFDAAIRVV 177
                  P    + T Q ++L +  G P +IE S+KT+Q V   F   +R +
Sbjct: 122 -------PSRT-VDTKQAQDLARSYGIP-FIETSAKTRQGVDDAFYTLVREI 164

>pdb|2KWI|A Chain A, Ralb-Rlip76 (Ralbp1) Complex Length = 178

Iteration: 1
 Score = 94.0 bits (232), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 55/167 (32%), Positives = 87/167 (52%), Gaps = 17/167 (10%)
Query: 8   KCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQEDY 67
           K + VG G VGK+ L + +  + F  DY PT  D++   VV++G  V + + DTAG EDY
Sbjct: 9   KVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEEVQIDILDTAGLEDY 68
Query: 68  NRLRPLSYRGADVFILAFSLISKASYENVS--KKWIPELKHYAPGVPIILVGTKLDLRDD 125
             +R   +R  + F+L FS+    S+   +  ++ I  +K     +P+++VG K DL + 
Sbjct: 69  AAIRDNYFRSGEGFLLVFSITEHESFTATAEFREQILRVKAEEDKIPLLVVGNKSDLEER 128
Query: 126 KQFFIDHPGAVPISTA--QGEELRKLIGAPAYIECSSKTQQNVKAVF 170
           +Q        VP+  A  + EE         Y+E S+KT+ NV  VF
Sbjct: 129 RQ--------VPVEEARSKAEEW-----GVQYVETSAKTRANVDKVF 162

>pdb|2KE5|A Chain A, Solution Structure And Dynamics Of The Small Gtpase Ralb In Its Active Conformation: Significance For Effector Protein Binding Length = 174

Iteration: 1
 Score = 94.0 bits (232), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 55/167 (32%), Positives = 87/167 (52%), Gaps = 17/167 (10%)
Query: 8   KCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQEDY 67
           K + VG G VGK+ L + +  + F  DY PT  D++   VV++G  V + + DTAG EDY
Sbjct: 5   KVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEEVQIDILDTAGLEDY 64
Query: 68  NRLRPLSYRGADVFILAFSLISKASYENVS--KKWIPELKHYAPGVPIILVGTKLDLRDD 125
             +R   +R  + F+L FS+    S+   +  ++ I  +K     +P+++VG K DL + 
Sbjct: 65  AAIRDNYFRSGEGFLLVFSITEHESFTATAEFREQILRVKAEEDKIPLLVVGNKSDLEER 124
Query: 126 KQFFIDHPGAVPISTA--QGEELRKLIGAPAYIECSSKTQQNVKAVF 170
           +Q        VP+  A  + EE         Y+E S+KT+ NV  VF
Sbjct: 125 RQ--------VPVEEARSKAEEW-----GVQYVETSAKTRANVDKVF 158

>pdb|1G17|A Chain A, Crystal Structure Of Sec4-Guanosine-5'-(Beta,Gamma)- Imidotriphosphate Length = 170

Iteration: 1
 Score = 94.0 bits (232), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 53/166 (31%), Positives = 86/166 (51%), Gaps = 15/166 (9%)
Query: 7   IKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVV-VNGSTVNLGLWDTAGQE 65
           +K + +GD  VGK+CLL+ +  + F   ++ T+  +F    V +NG  V L +WDTAGQE
Sbjct: 4   MKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQIWDTAGQE 63
Query: 66  DYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPG-VPIILVGTKLDLRD 124
            +  +    YRGA   IL + +  + ++ N+ K+W   +  +A     ++LVG K D+  
Sbjct: 64  RFRTITTAYYRGAMGIILVYDITDERTFTNI-KQWFKTVNEHANDEAQLLLVGNKSDME- 121
Query: 125 DKQFFIDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQQNVKAVF 170
                        ++  QGE L K +G P +IE S+K   NV  +F
Sbjct: 122 ----------TRVVTADQGEALAKELGIP-FIESSAKNDDNVNEIF 156

>pdb|4FMD|F Chain F, Espg-Rab1 Complex Structure At 3.05 A Length = 164

Iteration: 1
 Score = 94.0 bits (232), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 56/165 (33%), Positives = 89/165 (53%), Gaps = 14/165 (8%)
Query: 8   KCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVV-VNGSTVNLGLWDTAGQED 66
           K + +GD  VGK+CLL+ +  +T+   Y+ T+  +F    + ++G T+ L +WDTAGQE 
Sbjct: 1   KLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQER 60
Query: 67  YNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYA-PGVPIILVGTKLDLRDD 125
           +  +    YRGA   I+ + +  + S+ NV K+W+ E+  YA   V  +LVG K DL   
Sbjct: 61  FRTITSSYYRGAHGIIVVYDVTDQESFNNV-KQWLQEIDRYASENVNKLLVGNKCDLTTK 119
Query: 126 KQFFIDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQQNVKAVF 170
           K         V  +TA+  E    +G P ++E S+K   NV+  F
Sbjct: 120 K--------VVDYTTAK--EFADSLGIP-FLETSAKNATNVEQSF 153

>pdb|4EPR|A Chain A, Discovery Of Small Molecules That Bind To K-Ras And Inhibit Sos- Mediated Activation Length = 170

Iteration: 1
 Score = 94.0 bits (232), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 58/172 (33%), Positives = 92/172 (53%), Gaps = 15/172 (8%)
Query: 8   KCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQEDY 67
           K V VG   VGK+ L I    N F  +Y PT+ D++   VV++G T  L + DTAGQE+Y
Sbjct: 6   KLVVVGADGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEY 65
Query: 68  NRLRPLSYRGADVFILAFSLISKASYENVS--KKWIPELKHYAPGVPIILVGTKLDLRDD 125
           + +R    R  + F+  F++ +  S+E++   ++ I  +K  +  VP++LVG K DL   
Sbjct: 66  SAMRDQYMRTGEGFLCVFAINNTKSFEDIHHYREQIKRVKD-SEDVPMVLVGNKSDL--- 121
Query: 126 KQFFIDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQQNVKAVFDAAIRVV 177
                  P    + T Q ++L +  G P +IE S+KT+Q V   F   +R +
Sbjct: 122 -------PSRT-VDTKQAQDLARSYGIP-FIETSAKTRQGVDDAFYTLVREI 164

>pdb|4FMB|B Chain B, Vira-Rab1 Complex Structure Length = 171

Iteration: 1
 Score = 93.6 bits (231), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 56/167 (33%), Positives = 89/167 (53%), Gaps = 14/167 (8%)
Query: 6   FIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVV-VNGSTVNLGLWDTAGQ 64
             K + +GD  VGK+CLL+ +  +T+   Y+ T+  +F    + ++G T+ L +WDTAGQ
Sbjct: 6   LFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQ 65
Query: 65  EDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYA-PGVPIILVGTKLDLR 123
           E +  +    YRGA   I+ + +  + S+ NV K+W+ E+  YA   V  +LVG K DL 
Sbjct: 66  ERFRTITSSYYRGAHGIIVVYDVTDQESFNNV-KQWLQEIDRYASENVNKLLVGNKCDLT 124
Query: 124 DDKQFFIDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQQNVKAVF 170
             K         V  +TA+  E    +G P ++E S+K   NV+  F
Sbjct: 125 TKK--------VVDYTTAK--EFADSLGIP-FLETSAKNATNVEQSF 160

>pdb|4FMC|B Chain B, Espg-Rab1 Complex Length = 171

Iteration: 1
 Score = 93.6 bits (231), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 56/167 (33%), Positives = 89/167 (53%), Gaps = 14/167 (8%)
Query: 6   FIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVV-VNGSTVNLGLWDTAGQ 64
             K + +GD  VGK+CLL+ +  +T+   Y+ T+  +F    + ++G T+ L +WDTAGQ
Sbjct: 6   LFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQ 65
Query: 65  EDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYA-PGVPIILVGTKLDLR 123
           E +  +    YRGA   I+ + +  + S+ NV K+W+ E+  YA   V  +LVG K DL 
Sbjct: 66  ERFRTITSSYYRGAHGIIVVYDVTDQESFNNV-KQWLQEIDRYASENVNKLLVGNKCDLT 124
Query: 124 DDKQFFIDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQQNVKAVF 170
             K         V  +TA+  E    +G P ++E S+K   NV+  F
Sbjct: 125 TKK--------VVDYTTAK--EFADSLGIP-FLETSAKNATNVEQSF 160

>pdb|2G6B|A Chain A, Crystal Structure Of Human Rab26 In Complex With A Gtp Analogue Length = 180

Iteration: 1
 Score = 93.2 bits (230), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 58/169 (34%), Positives = 90/169 (53%), Gaps = 15/169 (8%)
Query: 7   IKCVTVGDGAVGKTCLLISYTSNTF-PTDYVPTVFDNFSANVV-VNGSTVNLGLWDTAGQ 64
            K + VGD  VGKTCLL+ +    F    ++ TV  +F   V+ V+G  V L +WDTAGQ
Sbjct: 11  FKVMLVGDSGVGKTCLLVRFKDGAFLAGTFISTVGIDFRNKVLDVDGVKVKLQMWDTAGQ 70
Query: 65  EDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAP-GVPIILVGTKLDLR 123
           E +  +    YR A   +L + + +KAS++N+ + W+ E+  YA   V ++L+G K+D  
Sbjct: 71  ERFRSVTHAYYRDAHALLLLYDVTNKASFDNI-QAWLTEIHEYAQHDVALMLLGNKVDSA 129
Query: 124 DDKQFFIDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQQNVKAVFDA 172
            ++           +    GE+L K  G P ++E S+KT  NV   F A
Sbjct: 130 HER----------VVKREDGEKLAKEYGLP-FMETSAKTGLNVDLAFTA 167

>pdb|2FOL|A Chain A, Crystal Structure Of Human Rab1a In Complex With Gdp Length = 191

Iteration: 1
 Score = 93.2 bits (230), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 56/167 (33%), Positives = 89/167 (53%), Gaps = 14/167 (8%)
Query: 6   FIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVV-VNGSTVNLGLWDTAGQ 64
             K + +GD  VGK+CLL+ +  +T+   Y+ T+  +F    + ++G T+ L +WDTAGQ
Sbjct: 25  LFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQ 84
Query: 65  EDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYA-PGVPIILVGTKLDLR 123
           E +  +    YRGA   I+ + +  + S+ NV K+W+ E+  YA   V  +LVG K DL 
Sbjct: 85  ERFRTITSSYYRGAHGIIVVYDVTDQESFNNV-KQWLQEIDRYASENVNKLLVGNKCDLT 143
Query: 124 DDKQFFIDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQQNVKAVF 170
             K         V  +TA+  E    +G P ++E S+K   NV+  F
Sbjct: 144 TKK--------VVDYTTAK--EFADSLGIP-FLETSAKNATNVEQSF 179

>pdb|2OCY|C Chain C, Complex Of The Guanine Exchange Factor Sec2p And The Rab Gtpase Sec4p Length = 170

Iteration: 1
 Score = 93.2 bits (230), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 54/165 (32%), Positives = 84/165 (50%), Gaps = 15/165 (9%)
Query: 8   KCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVV-VNGSTVNLGLWDTAGQED 66
           K + +GD  VGK+CLL+ +  + F   ++ T+  +F    V +NG  V L LWDTAGQE 
Sbjct: 5   KILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQLWDTAGQER 64
Query: 67  YNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPG-VPIILVGTKLDLRDD 125
           +  +    YRGA   IL + +  + ++ N+ K+W   +  +A     ++LVG K D    
Sbjct: 65  FRTITTAYYRGAXGIILVYDVTDERTFTNI-KQWFKTVNEHANDEAQLLLVGNKSDXE-- 121
Query: 126 KQFFIDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQQNVKAVF 170
                       ++  QGE L K +G P +IE S+K   NV  +F
Sbjct: 122 ---------TRVVTADQGEALAKELGIP-FIESSAKNDDNVNEIF 156

>pdb|3TKL|A Chain A, Crystal Structure Of The Gtp-Bound Rab1a In Complex With The Coiled- Coil Domain Of Lida From Legionella Pneumophila Length = 196

Iteration: 1
 Score = 92.8 bits (229), Expect = 9e-20,   Method: Compositional matrix adjust.
 Identities = 56/167 (33%), Positives = 89/167 (53%), Gaps = 14/167 (8%)
Query: 6   FIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVV-VNGSTVNLGLWDTAGQ 64
             K + +GD  VGK+CLL+ +  +T+   Y+ T+  +F    + ++G T+ L +WDTAGQ
Sbjct: 16  LFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQ 75
Query: 65  EDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYA-PGVPIILVGTKLDLR 123
           E +  +    YRGA   I+ + +  + S+ NV K+W+ E+  YA   V  +LVG K DL 
Sbjct: 76  ERFRTITSSYYRGAHGIIVVYDVTDQESFNNV-KQWLQEIDRYASENVNKLLVGNKCDLT 134
Query: 124 DDKQFFIDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQQNVKAVF 170
             K         V  +TA+  E    +G P ++E S+K   NV+  F
Sbjct: 135 TKK--------VVDYTTAK--EFADSLGIP-FLETSAKNATNVEQSF 170

>pdb|2RHD|A Chain A, Crystal Structure Of Cryptosporidium Parvum Small Gtpase Rab1a Length = 175

Iteration: 1
 Score = 92.8 bits (229), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 55/167 (32%), Positives = 87/167 (52%), Gaps = 14/167 (8%)
Query: 6   FIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVV-VNGSTVNLGLWDTAGQ 64
             K + +GD  VGK+CLL+ +  +T+   Y+ T+  +F    + +   TV L +WDTAGQ
Sbjct: 9   LFKLLLIGDSGVGKSCLLLRFADDTYTDSYISTIGVDFKIRTISLENKTVKLQIWDTAGQ 68
Query: 65  EDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYA-PGVPIILVGTKLDLR 123
           E +  +    YRGA   I+ + +  + S++NV K+WI E+  YA   V  +LVG K DL 
Sbjct: 69  ERFRTITSSYYRGAHGIIIVYDVTDRDSFDNV-KQWIQEIDRYAMENVNKLLVGNKCDLV 127
Query: 124 DDKQFFIDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQQNVKAVF 170
             +           +++ +G EL    G   +IE S+K   NV+  F
Sbjct: 128 SKR----------VVTSDEGRELADSHGIK-FIETSAKNAYNVEQAF 163

>pdb|2WWX|A Chain A, Crystal Structure Of The SidmDRRA(GEFGDF DOMAIN)-Rab1 (Gtpase Domain) Complex Length = 175

Iteration: 1
 Score = 92.8 bits (229), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 56/167 (33%), Positives = 89/167 (53%), Gaps = 14/167 (8%)
Query: 6   FIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVV-VNGSTVNLGLWDTAGQ 64
             K + +GD  VGK+CLL+ +  +T+   Y+ T+  +F    + ++G T+ L +WDTAGQ
Sbjct: 8   LFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQ 67
Query: 65  EDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYA-PGVPIILVGTKLDLR 123
           E +  +    YRGA   I+ + +  + S+ NV K+W+ E+  YA   V  +LVG K DL 
Sbjct: 68  ERFRTITSSYYRGAHGIIVVYDVTDQESFNNV-KQWLQEIDRYASENVNKLLVGIKCDLT 126
Query: 124 DDKQFFIDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQQNVKAVF 170
             K         V  +TA+  E    +G P ++E S+K   NV+  F
Sbjct: 127 TKK--------VVDYTTAK--EFADSLGIP-FLETSAKNATNVEQSF 162

>pdb|3SFV|A Chain A, Crystal Structure Of The Gdp-Bound Rab1a S25n Mutant In Complex With The Coiled-Coil Domain Of Lida From Legionella Pneumophila Length = 181

Iteration: 1
 Score = 92.8 bits (229), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 56/167 (33%), Positives = 88/167 (52%), Gaps = 14/167 (8%)
Query: 6   FIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVV-VNGSTVNLGLWDTAGQ 64
             K + +GD  VGK CLL+ +  +T+   Y+ T+  +F    + ++G T+ L +WDTAGQ
Sbjct: 16  LFKLLLIGDSGVGKNCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQ 75
Query: 65  EDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYA-PGVPIILVGTKLDLR 123
           E +  +    YRGA   I+ + +  + S+ NV K+W+ E+  YA   V  +LVG K DL 
Sbjct: 76  ERFRTITSSYYRGAHGIIVVYDVTDQESFNNV-KQWLQEIDRYASENVNKLLVGNKCDLT 134
Query: 124 DDKQFFIDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQQNVKAVF 170
             K         V  +TA+  E    +G P ++E S+K   NV+  F
Sbjct: 135 TKK--------VVDYTTAK--EFADSLGIP-FLETSAKNATNVEQSF 170

>pdb|2F9L|A Chain A, 3d Structure Of Inactive Human Rab11b Gtpase Length = 199

Iteration: 1
 Score = 92.8 bits (229), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 60/168 (35%), Positives = 88/168 (52%), Gaps = 16/168 (9%)
Query: 6   FIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSA-NVVVNGSTVNLGLWDTAGQ 64
             K V +GD  VGK+ LL  +T N F  +   T+   F+  ++ V+G T+   +WDTAGQ
Sbjct: 5   LFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQ 64
Query: 65  EDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYA-PGVPIILVGTKLDLR 123
           E Y R+    YRGA   +L + +    +YENV ++W+ EL+ +A   + I+LVG K DLR
Sbjct: 65  ERYRRITSAYYRGAVGALLVYDIAKHLTYENV-ERWLKELRDHADSNIVIMLVGNKSDLR 123
Query: 124 DDKQFFIDHPGAVPISTAQG-EELRKLIGAPAYIECSSKTQQNVKAVF 170
                   H  AVP   A+   E   L    ++IE S+    NV+  F
Sbjct: 124 --------HLRAVPTDEARAFAEKNNL----SFIETSALDSTNVEEAF 159

>pdb|3L0I|B Chain B, Complex Structure Of Sidm/drra With The Wild Type Rab1 Length = 199

Iteration: 1
 Score = 92.8 bits (229), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 56/167 (33%), Positives = 89/167 (53%), Gaps = 14/167 (8%)
Query: 6   FIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVV-VNGSTVNLGLWDTAGQ 64
             K + +GD  VGK+CLL+ +  +T+   Y+ T+  +F    + ++G T+ L +WDTAGQ
Sbjct: 33  LFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQ 92
Query: 65  EDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYA-PGVPIILVGTKLDLR 123
           E +  +    YRGA   I+ + +  + S+ NV K+W+ E+  YA   V  +LVG K DL 
Sbjct: 93  ERFRTITSSYYRGAHGIIVVYDVTDQESFNNV-KQWLQEIDRYASENVNKLLVGNKCDLT 151
Query: 124 DDKQFFIDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQQNVKAVF 170
             K         V  +TA+  E    +G P ++E S+K   NV+  F
Sbjct: 152 TKK--------VVDYTTAK--EFADSLGIP-FLETSAKNATNVEQSF 187

>pdb|1G16|A Chain A, Crystal Structure Of Sec4-Gdp Length = 170

Iteration: 1
 Score = 92.4 bits (228), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 53/165 (32%), Positives = 84/165 (50%), Gaps = 15/165 (9%)
Query: 8   KCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVV-VNGSTVNLGLWDTAGQED 66
           K + +GD  VGK+CLL+ +  + F   ++ T+  +F    V +NG  V L +WDTAGQE 
Sbjct: 5   KILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQIWDTAGQER 64
Query: 67  YNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPG-VPIILVGTKLDLRDD 125
           +  +    YRGA   IL + +  + ++ N+ K+W   +  +A     ++LVG K D    
Sbjct: 65  FRTITTAYYRGAXGIILVYDITDERTFTNI-KQWFKTVNEHANDEAQLLLVGNKSDXE-- 121
Query: 126 KQFFIDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQQNVKAVF 170
                       ++  QGE L K +G P +IE S+K   NV  +F
Sbjct: 122 ---------TRVVTADQGEALAKELGIP-FIESSAKNDDNVNEIF 156

>pdb|2A78|A Chain A, Crystal Structure Of The C3bot-Rala Complex Reveals A Novel Type Of Action Of A Bacterial Exoenzyme Length = 187

Iteration: 1
 Score = 92.0 bits (227), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 56/165 (33%), Positives = 84/165 (50%), Gaps = 14/165 (8%)
Query: 8   KCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQEDY 67
           K + VG G VGK+ L + +  + F  DY PT  D++   VV++G  V + + DTAGQEDY
Sbjct: 20  KVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEEVQIDILDTAGQEDY 79
Query: 68  NRLRPLSYRGADVFILAFSLISKASYENVS--KKWIPELKHYAPGVPIILVGTKLDLRDD 125
             +R   +R  + F+  FS+    S+   +  ++ I  +K     VP +LVG K DL D 
Sbjct: 80  AAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKE-DENVPFLLVGNKSDLEDK 138
Query: 126 KQFFIDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQQNVKAVF 170
           +Q        V +  A+    R       Y+E S+KT+ NV  VF
Sbjct: 139 RQ--------VSVEEAKN---RAEQWNVNYVETSAKTRANVDKVF 172

>pdb|1UAD|A Chain A, Crystal Structure Of The Rala-gppnhp-sec5 Ral-binding Domain Complex Length = 175

Iteration: 1
 Score = 92.0 bits (227), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 56/165 (33%), Positives = 84/165 (50%), Gaps = 14/165 (8%)
Query: 8   KCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQEDY 67
           K + VG G VGK+ L + +  + F  DY PT  D++   VV++G  V + + DTAGQEDY
Sbjct: 8   KVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEEVQIDILDTAGQEDY 67
Query: 68  NRLRPLSYRGADVFILAFSLISKASYENVS--KKWIPELKHYAPGVPIILVGTKLDLRDD 125
             +R   +R  + F+  FS+    S+   +  ++ I  +K     VP +LVG K DL D 
Sbjct: 68  AAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKE-DENVPFLLVGNKSDLEDK 126
Query: 126 KQFFIDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQQNVKAVF 170
           +Q        V +  A+    R       Y+E S+KT+ NV  VF
Sbjct: 127 RQ--------VSVEEAKN---RAEQWNVNYVETSAKTRANVDKVF 160

>pdb|2BOV|A Chain A, Molecular Recognition Of An Adp-Ribosylating Clostridium Botulinum C3 Exoenzyme By Rala Gtpase Length = 206

Iteration: 1
 Score = 91.3 bits (225), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 56/165 (33%), Positives = 84/165 (50%), Gaps = 14/165 (8%)
Query: 8   KCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQEDY 67
           K + VG G VGK+ L + +  + F  DY PT  D++   VV++G  V + + DTAGQEDY
Sbjct: 16  KVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEEVQIDILDTAGQEDY 75
Query: 68  NRLRPLSYRGADVFILAFSLISKASYENVS--KKWIPELKHYAPGVPIILVGTKLDLRDD 125
             +R   +R  + F+  FS+    S+   +  ++ I  +K     VP +LVG K DL D 
Sbjct: 76  AAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKE-DENVPFLLVGNKSDLEDK 134
Query: 126 KQFFIDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQQNVKAVF 170
           +Q        V +  A+    R       Y+E S+KT+ NV  VF
Sbjct: 135 RQ--------VSVEEAKN---RAEQWNVNYVETSAKTRANVDKVF 168

>pdb|1YZK|A Chain A, Gppnhp Bound Rab11 Gtpase Length = 184

Iteration: 1
 Score = 91.3 bits (225), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 58/167 (34%), Positives = 87/167 (52%), Gaps = 14/167 (8%)
Query: 6   FIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSA-NVVVNGSTVNLGLWDTAGQ 64
             K V +GD  VGK+ LL  +T N F  +   T+   F+  ++ V+G T+   +WDTAGQ
Sbjct: 20  LFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQ 79
Query: 65  EDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYA-PGVPIILVGTKLDLR 123
           E Y  +    YRGA   +L + +    +YENV ++W+ EL+ +A   + I+LVG K DLR
Sbjct: 80  ERYRAITSAYYRGAVGALLVYDIAKHLTYENV-ERWLKELRDHADSNIVIMLVGNKSDLR 138
Query: 124 DDKQFFIDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQQNVKAVF 170
                   H  AVP   A+    +      ++IE S+    NV+A F
Sbjct: 139 --------HLRAVPTDEARAFAEKN---GLSFIETSALDSTNVEAAF 174

>pdb|1U8Y|A Chain A, Crystal Structures Of Ral-Gppnhp And Ral-Gdp Reveal Two Novel Binding Sites That Are Also Present In Ras And Rap Length = 168

Iteration: 1
 Score = 91.3 bits (225), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 56/165 (33%), Positives = 84/165 (50%), Gaps = 14/165 (8%)
Query: 8   KCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQEDY 67
           K + VG G VGK+ L + +  + F  DY PT  D++   VV++G  V + + DTAGQEDY
Sbjct: 6   KVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEEVQIDILDTAGQEDY 65
Query: 68  NRLRPLSYRGADVFILAFSLISKASYENVS--KKWIPELKHYAPGVPIILVGTKLDLRDD 125
             +R   +R  + F+  FS+    S+   +  ++ I  +K     VP +LVG K DL D 
Sbjct: 66  AAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKE-DENVPFLLVGNKSDLEDK 124
Query: 126 KQFFIDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQQNVKAVF 170
           +Q        V +  A+    R       Y+E S+KT+ NV  VF
Sbjct: 125 RQ--------VSVEEAKN---RADQWNVNYVETSAKTRANVDKVF 158

>pdb|1OIV|A Chain A, X-Ray Structure Of The Small G Protein Rab11a In Complex With Gdp Length = 191

Iteration: 1
 Score = 90.9 bits (224), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 58/167 (34%), Positives = 88/167 (52%), Gaps = 14/167 (8%)
Query: 6   FIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSA-NVVVNGSTVNLGLWDTAGQ 64
             K V +GD  VGK+ LL  +T N F  +   T+   F+  ++ V+G T+   +WDTAGQ
Sbjct: 29  LFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQ 88
Query: 65  EDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYA-PGVPIILVGTKLDLR 123
           E Y  +    YRGA   +L + +    +YENV ++W+ EL+ +A   + I+LVG K DLR
Sbjct: 89  ERYRAITSAYYRGAVGALLVYDIAKHLTYENV-ERWLKELRDHADSNIVIMLVGNKSDLR 147
Query: 124 DDKQFFIDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQQNVKAVF 170
                   H  AVP   A+    +  +   ++IE S+    NV+A F
Sbjct: 148 --------HLRAVPTDEARAFAEKNGL---SFIETSALDSTNVEAAF 183

>pdb|2EFC|B Chain B, Ara7-GdpATVPS9A Length = 181

Iteration: 1
 Score = 90.1 bits (222), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 56/165 (33%), Positives = 86/165 (52%), Gaps = 14/165 (8%)
Query: 8   KCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNF-SANVVVNGSTVNLGLWDTAGQED 66
           K V +GD   GK+ L++ +  + F      T+   F S  + VN +TV   +WDTAGQE 
Sbjct: 14  KLVLLGDVGAGKSSLVLRFVKDQFVEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQER 73
Query: 67  YNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYA-PGVPIILVGTKLDLRDD 125
           Y+ L P+ YRGA   I+ F + ++AS+E  +KKW+ EL+    P + + L G K DL D 
Sbjct: 74  YHSLAPMYYRGAAAAIIVFDVTNQASFER-AKKWVQELQAQGNPNMVMALAGNKSDLLDA 132
Query: 126 KQFFIDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQQNVKAVF 170
           ++            TA+  +         ++E S+KT  NVK +F
Sbjct: 133 RKV-----------TAEDAQTYAQENGLFFMETSAKTATNVKEIF 166

>pdb|2EW1|A Chain A, Crystal Structure Of Rab30 In Complex With A Gtp Analogue Length = 201

Iteration: 1
 Score = 90.1 bits (222), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 57/175 (32%), Positives = 89/175 (50%), Gaps = 15/175 (8%)
Query: 6   FIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVV-VNGSTVNLGLWDTAGQ 64
             K V +G+  VGKTCL+  +T   FP     T+  +F    V +NG  V L +WDTAGQ
Sbjct: 26  LFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEINGEKVKLQIWDTAGQ 85
Query: 65  EDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPG-VPIILVGTKLDLR 123
           E +  +    YR A+  IL + +  + S+  +  +W+ E++ YA   V  +LVG K+DL 
Sbjct: 86  ERFRSITQSYYRSANALILTYDITCEESFRCLP-EWLREIEQYASNKVITVLVGNKIDLA 144
Query: 124 DDKQFFIDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQQNVKAVF-DAAIRVV 177
           + ++  +    A   S AQ            Y+E S+K   NV+ +F D A R++
Sbjct: 145 ERRE--VSQQRAEEFSEAQD---------MYYLETSAKESDNVEKLFLDLACRLI 188

>pdb|3RAB|A Chain A, Gppnhp-bound Rab3a At 2.0 A Resolution Length = 169

Iteration: 1
 Score = 90.1 bits (222), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 53/173 (30%), Positives = 89/173 (51%), Gaps = 14/173 (8%)
Query: 7   IKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVV-NGSTVNLGLWDTAGQE 65
            K + +G+ +VGKT  L  Y  ++F   +V TV  +F    +  N   + L +WDTAGQE
Sbjct: 6   FKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDTAGQE 65
Query: 66  DYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYA-PGVPIILVGTKLDLRD 124
            Y  +    YRGA  FIL + + ++ S+ N  + W  ++K Y+     ++LVG K D+ D
Sbjct: 66  RYRTITTAYYRGAMGFILMYDITNEESF-NAVQDWSTQIKTYSWDNAQVLLVGNKCDMED 124
Query: 125 DKQFFIDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQQNVKAVFDAAIRVV 177
           ++           +S+ +G +L   +G   + E S+K   NVK  F+  + V+
Sbjct: 125 ER----------VVSSERGRQLADHLGFE-FFEASAKDNINVKQTFERLVDVI 166

>pdb|1YZU|A Chain A, Gppnhp-Bound Rab21 Gtpase At 2.50 A Resolution Length = 170

Iteration: 1
 Score = 89.0 bits (219), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 53/173 (30%), Positives = 93/173 (53%), Gaps = 15/173 (8%)
Query: 8   KCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNF-SANVVVNGSTVNLGLWDTAGQED 66
           K V +G+G VGKT L++ Y  N F   ++ T+  +F +  + + G  VNL +WDTAGQE 
Sbjct: 8   KVVLLGEGCVGKTSLVLRYCENKFNDKHITTLQASFLTKKLNIGGKRVNLAIWDTAGQER 67
Query: 67  YNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPEL-KHYAPGVPIILVGTKLDLRDD 125
           ++ L P+ YR ++  IL + +  + S++ V K W+ EL K     + + +VG K+DL  +
Sbjct: 68  FHALGPIYYRDSNGAILVYDITDEDSFQKV-KNWVKELRKMLGNEICLCIVGNKIDLEKE 126
Query: 126 KQFFIDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQQNVKAVF-DAAIRVV 177
           +           +S  + E   + +GA  Y   S+K  + ++ +F D   R++
Sbjct: 127 RH----------VSIQEAESYAESVGAKHY-HTSAKQNKGIEELFLDLCKRMI 168

>pdb|1Z08|A Chain A, Gppnhp-Bound Rab21 Q53g Mutant Gtpase Length = 170

Iteration: 1
 Score = 89.0 bits (219), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 53/173 (30%), Positives = 93/173 (53%), Gaps = 15/173 (8%)
Query: 8   KCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNF-SANVVVNGSTVNLGLWDTAGQED 66
           K V +G+G VGKT L++ Y  N F   ++ T+  +F +  + + G  VNL +WDTAGQE 
Sbjct: 8   KVVLLGEGCVGKTSLVLRYCENKFNDKHITTLGASFLTKKLNIGGKRVNLAIWDTAGQER 67
Query: 67  YNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPEL-KHYAPGVPIILVGTKLDLRDD 125
           ++ L P+ YR ++  IL + +  + S++ V K W+ EL K     + + +VG K+DL  +
Sbjct: 68  FHALGPIYYRDSNGAILVYDITDEDSFQKV-KNWVKELRKMLGNEICLCIVGNKIDLEKE 126
Query: 126 KQFFIDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQQNVKAVF-DAAIRVV 177
           +           +S  + E   + +GA  Y   S+K  + ++ +F D   R++
Sbjct: 127 RH----------VSIQEAESYAESVGAKHY-HTSAKQNKGIEELFLDLCKRMI 168

>pdb|1YZT|A Chain A, Gppnhp-Bound Rab21 Gtpase At 2.05 A Resolution Length = 184

Iteration: 1
 Score = 89.0 bits (219), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 53/173 (30%), Positives = 93/173 (53%), Gaps = 15/173 (8%)
Query: 8   KCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNF-SANVVVNGSTVNLGLWDTAGQED 66
           K V +G+G VGKT L++ Y  N F   ++ T+  +F +  + + G  VNL +WDTAGQE 
Sbjct: 22  KVVLLGEGCVGKTSLVLRYCENKFNDKHITTLQASFLTKKLNIGGKRVNLAIWDTAGQER 81
Query: 67  YNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPEL-KHYAPGVPIILVGTKLDLRDD 125
           ++ L P+ YR ++  IL + +  + S++ V K W+ EL K     + + +VG K+DL  +
Sbjct: 82  FHALGPIYYRDSNGAILVYDITDEDSFQKV-KNWVKELRKMLGNEICLCIVGNKIDLEKE 140
Query: 126 KQFFIDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQQNVKAVF-DAAIRVV 177
           +           +S  + E   + +GA  Y   S+K  + ++ +F D   R++
Sbjct: 141 RH----------VSIQEAESYAESVGAKHY-HTSAKQNKGIEELFLDLCKRMI 182

>pdb|3TW8|B Chain B, Gef Domain Of Dennd 1b In Complex With Rab Gtpase Rab35 Length = 181

Iteration: 1
 Score = 88.6 bits (218), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 56/175 (32%), Positives = 86/175 (49%), Gaps = 13/175 (7%)
Query: 5   RFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVV-VNGSTVNLGLWDTAG 63
              K + +GD  VGK+ LL+ +  NTF   Y+ T+  +F    V +NG  V L +WDTAG
Sbjct: 8   HLFKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGEKVKLQIWDTAG 67
Query: 64  QEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLR 123
           QE +  +    YRG    I+ + + S  S+ NV K+W+ E+      V  ILVG K D  
Sbjct: 68  QERFRTITSTYYRGTHGVIVVYDVTSAESFVNV-KRWLHEINQNCDDVCRILVGNKND-- 124
Query: 124 DDKQFFIDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQQNVKAVFDAAIRVVL 178
           D ++  ++   A   +   G +L          E S+K   NV+ +F+    +VL
Sbjct: 125 DPERKVVETEDAYKFAGQMGIQL---------FETSAKENVNVEEMFNCITELVL 170

>pdb|2HV8|A Chain A, Crystal Structure Of Gtp-Bound Rab11 In Complex With Fip3 Length = 172

Iteration: 1
 Score = 88.6 bits (218), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 57/167 (34%), Positives = 86/167 (51%), Gaps = 14/167 (8%)
Query: 6   FIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSA-NVVVNGSTVNLGLWDTAGQ 64
             K V +GD  VGK+ LL  +T N F  +   T+   F+  ++ V+G T+   +WDTAG 
Sbjct: 8   LFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGL 67
Query: 65  EDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYA-PGVPIILVGTKLDLR 123
           E Y  +    YRGA   +L + +    +YENV ++W+ EL+ +A   + I+LVG K DLR
Sbjct: 68  ERYRAITSAYYRGAVGALLVYDIAKHLTYENV-ERWLKELRDHADSNIVIMLVGNKSDLR 126
Query: 124 DDKQFFIDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQQNVKAVF 170
                   H  AVP   A+    +      ++IE S+    NV+A F
Sbjct: 127 --------HLRAVPTDEARAFAEKN---GLSFIETSALDSTNVEAAF 162

>pdb|2BCG|Y Chain Y, Structure Of Doubly Prenylated Ypt1:gdi Complex Length = 206

Iteration: 1
 Score = 88.6 bits (218), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 43/123 (34%), Positives = 72/123 (58%), Gaps = 3/123 (2%)
Query: 6   FIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVV-VNGSTVNLGLWDTAGQ 64
             K + +G+  VGK+CLL+ ++ +T+  DY+ T+  +F    V ++G TV L +WDTAGQ
Sbjct: 8   LFKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWDTAGQ 67
Query: 65  EDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPI-ILVGTKLDLR 123
           E +  +    YRG+   I+ + +  + S+  V K W+ E+  YA    + +LVG K DL+
Sbjct: 68  ERFRTITSSYYRGSHGIIIVYDVTDQESFNGV-KMWLQEIDRYATSTVLKLLVGNKCDLK 126
Query: 124 DDK 126
           D +
Sbjct: 127 DKR 129

>pdb|2IF0|A Chain A, Crystal Structure Of Mouse Rab27b Bound To Gdp In Monoclinic Space Group Length = 200

Iteration: 1
 Score = 88.6 bits (218), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 61/186 (32%), Positives = 93/186 (50%), Gaps = 25/186 (13%)
Query: 6   FIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVV------NGST-----V 54
            IK + +GD  VGKT  L  YT N F   ++ TV  +F    VV      +G++     V
Sbjct: 11  LIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYDTQGADGASGKAFKV 70
Query: 55  NLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELK--HYAPGVP 112
           +L LWDTAG E +  L    +R A  F+L F L S+ S+ NV + W+ +L+   Y     
Sbjct: 71  HLQLWDTAGLERFRSLTTAFFRDAMGFLLMFDLTSQQSFLNV-RNWMSQLQANAYCENPD 129
Query: 113 IILVGTKLDLRDDKQFFIDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQQNVKAVFDA 172
           I+L+G K DL D ++          ++  Q  EL +  G P Y E S+ T QNV+   + 
Sbjct: 130 IVLIGNKADLPDQRE----------VNERQARELAEKYGIP-YFETSAATGQNVEKSVET 178
Query: 173 AIRVVL 178
            + +++
Sbjct: 179 LLDLIM 184

>pdb|1UKV|Y Chain Y, Structure Of Rabgdp-Dissociation Inhibitor In Complex With Prenylated Ypt1 Gtpase Length = 206

Iteration: 1
 Score = 88.6 bits (218), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 43/123 (34%), Positives = 72/123 (58%), Gaps = 3/123 (2%)
Query: 6   FIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVV-VNGSTVNLGLWDTAGQ 64
             K + +G+  VGK+CLL+ ++ +T+  DY+ T+  +F    V ++G TV L +WDTAGQ
Sbjct: 8   LFKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWDTAGQ 67
Query: 65  EDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPI-ILVGTKLDLR 123
           E +  +    YRG+   I+ + +  + S+  V K W+ E+  YA    + +LVG K DL+
Sbjct: 68  ERFRTITSSYYRGSHGIIIVYDVTDQESFNGV-KMWLQEIDRYATSTVLKLLVGNKCDLK 126
Query: 124 DDK 126
           D +
Sbjct: 127 DKR 129

>pdb|1ZC3|A Chain A, Crystal Structure Of The Ral-Binding Domain Of Exo84 In Complex With The Active Rala Length = 175

Iteration: 1
 Score = 88.6 bits (218), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 55/165 (33%), Positives = 83/165 (50%), Gaps = 14/165 (8%)
Query: 8   KCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQEDY 67
           K + VG G VGK+ L + +  + F  DY PT  D++   VV++G  V + + DTAG EDY
Sbjct: 8   KVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEEVQIDILDTAGLEDY 67
Query: 68  NRLRPLSYRGADVFILAFSLISKASYENVS--KKWIPELKHYAPGVPIILVGTKLDLRDD 125
             +R   +R  + F+  FS+    S+   +  ++ I  +K     VP +LVG K DL D 
Sbjct: 68  AAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKE-DENVPFLLVGNKSDLEDK 126
Query: 126 KQFFIDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQQNVKAVF 170
           +Q        V +  A+    R       Y+E S+KT+ NV  VF
Sbjct: 127 RQ--------VSVEEAKN---RAEQWNVNYVETSAKTRANVDKVF 160

>pdb|1WQ1|R Chain R, Ras-Rasgap Complex Length = 166

Iteration: 1
 Score = 88.2 bits (217), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 52/161 (32%), Positives = 87/161 (54%), Gaps = 15/161 (9%)
Query: 19  KTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGA 78
           K+ L I    N F  +Y PT+ D++   VV++G T  L + DTAGQE+Y+ +R    R  
Sbjct: 16  KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTG 75
Query: 79  DVFILAFSLISKASYENVS--KKWIPELKHYAPGVPIILVGTKLDLRDDKQFFIDHPGAV 136
           + F+  F++ +  S+E++   ++ I  +K  +  VP++LVG K DL            A 
Sbjct: 76  EGFLCVFAINNTKSFEDIHQYREQIKRVKD-SDDVPMVLVGNKCDL-----------AAR 123
Query: 137 PISTAQGEELRKLIGAPAYIECSSKTQQNVKAVFDAAIRVV 177
            + + Q ++L +  G P YIE S+KT+Q V+  F   +R +
Sbjct: 124 TVESRQAQDLARSYGIP-YIETSAKTRQGVEDAFYTLVREI 163

>pdb|1RVD|A Chain A, H-Ras Complexed With Diaminobenzophenone-Beta,Gamma-Imido- Gtp Length = 166

Iteration: 1
 Score = 88.2 bits (217), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 52/161 (32%), Positives = 87/161 (54%), Gaps = 15/161 (9%)
Query: 19  KTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGA 78
           K+ L I    N F  +Y PT+ D++   VV++G T  L + DTAGQE+Y+ +R    R  
Sbjct: 16  KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTG 75
Query: 79  DVFILAFSLISKASYENVS--KKWIPELKHYAPGVPIILVGTKLDLRDDKQFFIDHPGAV 136
           + F+  F++ +  S+E++   ++ I  +K  +  VP++LVG K DL            A 
Sbjct: 76  EGFLCVFAINNTKSFEDIHQYREQIKRVKD-SDDVPMVLVGNKCDL-----------AAR 123
Query: 137 PISTAQGEELRKLIGAPAYIECSSKTQQNVKAVFDAAIRVV 177
            + + Q ++L +  G P YIE S+KT+Q V+  F   +R +
Sbjct: 124 TVESRQAQDLARSYGIP-YIETSAKTRQGVEDAFYTLVREI 163

>pdb|6Q21|A Chain A, Molecular Switch For Signal Transduction: Structural Differences Between Active And Inactive Forms Of Protooncogenic Ras Proteins Length = 171

Iteration: 1
 Score = 88.2 bits (217), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 52/161 (32%), Positives = 87/161 (54%), Gaps = 15/161 (9%)
Query: 19  KTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGA 78
           K+ L I    N F  +Y PT+ D++   VV++G T  L + DTAGQE+Y+ +R    R  
Sbjct: 16  KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTG 75
Query: 79  DVFILAFSLISKASYENVS--KKWIPELKHYAPGVPIILVGTKLDLRDDKQFFIDHPGAV 136
           + F+  F++ +  S+E++   ++ I  +K  +  VP++LVG K DL            A 
Sbjct: 76  EGFLCVFAINNTKSFEDIHQYREQIKRVKD-SDDVPMVLVGNKCDL-----------AAR 123
Query: 137 PISTAQGEELRKLIGAPAYIECSSKTQQNVKAVFDAAIRVV 177
            + + Q ++L +  G P YIE S+KT+Q V+  F   +R +
Sbjct: 124 TVESRQAQDLARSYGIP-YIETSAKTRQGVEDAFYTLVREI 163

>pdb|2Q21|A Chain A, Crystal Structures At 2.2 Angstroms Resolution Of The Catalytic Domains Of Normal Ras Protein And An Oncogenic Mutant Complexed With Gsp Length = 171

Iteration: 1
 Score = 88.2 bits (217), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 52/161 (32%), Positives = 87/161 (54%), Gaps = 15/161 (9%)
Query: 19  KTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGA 78
           K+ L I    N F  +Y PT+ D++   VV++G T  L + DTAGQE+Y+ +R    R  
Sbjct: 16  KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTG 75
Query: 79  DVFILAFSLISKASYENVS--KKWIPELKHYAPGVPIILVGTKLDLRDDKQFFIDHPGAV 136
           + F+  F++ +  S+E++   ++ I  +K  +  VP++LVG K DL            A 
Sbjct: 76  EGFLCVFAINNTKSFEDIHQYREQIKRVKD-SDDVPMVLVGNKCDL-----------AAR 123
Query: 137 PISTAQGEELRKLIGAPAYIECSSKTQQNVKAVFDAAIRVV 177
            + + Q ++L +  G P YIE S+KT+Q V+  F   +R +
Sbjct: 124 TVESRQAQDLARSYGIP-YIETSAKTRQGVEDAFYTLVREI 163

>pdb|1YZN|A Chain A, Gppnhp-Bound Ypt1p Gtpase Length = 185

Iteration: 1
 Score = 88.2 bits (217), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 43/123 (34%), Positives = 72/123 (58%), Gaps = 3/123 (2%)
Query: 6   FIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVV-VNGSTVNLGLWDTAGQ 64
             K + +G+  VGK+CLL+ ++ +T+  DY+ T+  +F    V ++G TV L +WDTAGQ
Sbjct: 21  LFKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWDTAGQ 80
Query: 65  EDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPI-ILVGTKLDLR 123
           E +  +    YRG+   I+ + +  + S+  V K W+ E+  YA    + +LVG K DL+
Sbjct: 81  ERFRTITSSYYRGSHGIIIVYDVTDQESFNGV-KMWLQEIDRYATSTVLKLLVGNKCDLK 139
Query: 124 DDK 126
           D +
Sbjct: 140 DKR 142

>pdb|3QBT|A Chain A, Crystal Structure Of Ocrl1 540-678 In Complex With Rab8a:gppnhp Length = 174

Iteration: 1
 Score = 88.2 bits (217), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 48/165 (29%), Positives = 90/165 (54%), Gaps = 14/165 (8%)
Query: 8   KCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVV-VNGSTVNLGLWDTAGQED 66
           K + +GD  VGKTC+L  ++ + F + ++ T+  +F    + ++G  + L +WDTAGQE 
Sbjct: 8   KLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQER 67
Query: 67  YNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPG-VPIILVGTKLDLRDD 125
           +  +    YRGA   +L + + ++ S++N+ + WI  ++ +A   V  +++G K D+ D 
Sbjct: 68  FRTITTAYYRGAMGIMLVYDITNEKSFDNI-RNWIRNIEEHASADVEKMILGNKCDVNDK 126
Query: 126 KQFFIDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQQNVKAVF 170
           +Q          +S  +GE+L    G   ++E S+K   NV+  F
Sbjct: 127 RQ----------VSKERGEKLALDYGIK-FMETSAKANINVENAF 160

>pdb|2C5L|A Chain A, Structure Of Plc Epsilon Ras Association Domain With Hras Length = 173

Iteration: 1
 Score = 88.2 bits (217), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 52/161 (32%), Positives = 87/161 (54%), Gaps = 15/161 (9%)
Query: 19  KTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGA 78
           K+ L I    N F  +Y PT+ D++   VV++G T  L + DTAGQE+Y+ +R    R  
Sbjct: 23  KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTG 82
Query: 79  DVFILAFSLISKASYENVS--KKWIPELKHYAPGVPIILVGTKLDLRDDKQFFIDHPGAV 136
           + F+  F++ +  S+E++   ++ I  +K  +  VP++LVG K DL            A 
Sbjct: 83  EGFLCVFAINNTKSFEDIHQYREQIKRVKD-SDDVPMVLVGNKCDL-----------AAR 130
Query: 137 PISTAQGEELRKLIGAPAYIECSSKTQQNVKAVFDAAIRVV 177
            + + Q ++L +  G P YIE S+KT+Q V+  F   +R +
Sbjct: 131 TVESRQAQDLARSYGIP-YIETSAKTRQGVEDAFYTLVREI 170

>pdb|1Z22|A Chain A, Gdp-Bound Rab23 Gtpase Crystallized In C222(1) Space Group Length = 168

Iteration: 1
 Score = 88.2 bits (217), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 58/165 (35%), Positives = 78/165 (47%), Gaps = 13/165 (7%)
Query: 7   IKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTV-FDNFSANVVVNGSTVNLGLWDTAGQE 65
           IK V VG+GAVGK+ ++  Y    F  DY  T+  D     + VN   V L LWDTAGQE
Sbjct: 6   IKMVVVGNGAVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIQVNDEDVRLMLWDTAGQE 65
Query: 66  DYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLRDD 125
           +++ +    YRGA   +L FS   + S+E +S  W  ++      +P  LV  K+DL DD
Sbjct: 66  EFDAITKAYYRGAQACVLVFSTTDRESFEAIS-SWREKVVAEVGDIPTALVQNKIDLLDD 124
Query: 126 KQFFIDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQQNVKAVF 170
                       I   + E L K +    Y   S K   NV  VF
Sbjct: 125 S----------CIKNEEAEGLAKRLKLRFY-RTSVKEDLNVSEVF 158

>pdb|3V4F|A Chain A, H-Ras Peg 400CACL2, ORDERED OFF Length = 166

Iteration: 1
 Score = 88.2 bits (217), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 52/161 (32%), Positives = 87/161 (54%), Gaps = 15/161 (9%)
Query: 19  KTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGA 78
           K+ L I    N F  +Y PT+ D++   VV++G T  L + DTAGQE+Y+ +R    R  
Sbjct: 16  KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDEYMRTG 75
Query: 79  DVFILAFSLISKASYENVS--KKWIPELKHYAPGVPIILVGTKLDLRDDKQFFIDHPGAV 136
           + F+  F++ +  S+E++   ++ I  +K  +  VP++LVG K DL            A 
Sbjct: 76  EGFLCVFAINNTKSFEDIHQYREQIKRVKD-SDDVPMVLVGNKCDL-----------AAR 123
Query: 137 PISTAQGEELRKLIGAPAYIECSSKTQQNVKAVFDAAIRVV 177
            + + Q ++L +  G P YIE S+KT+Q V+  F   +R +
Sbjct: 124 TVESRQAQDLARSYGIP-YIETSAKTRQGVEDAFYTLVREI 163

>pdb|2X1V|A Chain A, Crystal Structure Of The Activating H-Ras I163f Mutant In Costello Syndrome, Bound To Mg-Gdp Length = 166

Iteration: 1
 Score = 87.8 bits (216), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 52/159 (32%), Positives = 86/159 (54%), Gaps = 15/159 (9%)
Query: 19  KTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGA 78
           K+ L I    N F  +Y PT+ D++   VV++G T  L + DTAGQE+Y+ +R    R  
Sbjct: 16  KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTG 75
Query: 79  DVFILAFSLISKASYENVS--KKWIPELKHYAPGVPIILVGTKLDLRDDKQFFIDHPGAV 136
           + F+  F++ +  S+E++   ++ I  +K  +  VP++LVG K DL            A 
Sbjct: 76  EGFLCVFAINNTKSFEDIHQYREQIKRVKD-SDDVPMVLVGNKCDL-----------AAR 123
Query: 137 PISTAQGEELRKLIGAPAYIECSSKTQQNVKAVFDAAIR 175
            + + Q ++L +  G P YIE S+KT+Q V+  F   +R
Sbjct: 124 TVESRQAQDLARSYGIP-YIETSAKTRQGVEDAFYTLVR 161

>pdb|4EFM|A Chain A, Crystal Structure Of H-Ras G12v In Complex With Gppnhp (State 1) Length = 171

Iteration: 1
 Score = 87.8 bits (216), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 52/161 (32%), Positives = 87/161 (54%), Gaps = 15/161 (9%)
Query: 19  KTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGA 78
           K+ L I    N F  +Y PT+ D++   VV++G T  L + DTAGQE+Y+ +R    R  
Sbjct: 21  KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTG 80
Query: 79  DVFILAFSLISKASYENVS--KKWIPELKHYAPGVPIILVGTKLDLRDDKQFFIDHPGAV 136
           + F+  F++ +  S+E++   ++ I  +K  +  VP++LVG K DL            A 
Sbjct: 81  EGFLCVFAINNTKSFEDIHQYREQIKRVKD-SDDVPMVLVGNKCDL-----------AAR 128
Query: 137 PISTAQGEELRKLIGAPAYIECSSKTQQNVKAVFDAAIRVV 177
            + + Q ++L +  G P YIE S+KT+Q V+  F   +R +
Sbjct: 129 TVESRQAQDLARSYGIP-YIETSAKTRQGVEDAFYTLVREI 168

>pdb|4EFL|A Chain A, Crystal Structure Of H-Ras Wt In Complex With Gppnhp (State 1) Length = 171

Iteration: 1
 Score = 87.8 bits (216), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 52/161 (32%), Positives = 87/161 (54%), Gaps = 15/161 (9%)
Query: 19  KTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGA 78
           K+ L I    N F  +Y PT+ D++   VV++G T  L + DTAGQE+Y+ +R    R  
Sbjct: 21  KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTG 80
Query: 79  DVFILAFSLISKASYENVS--KKWIPELKHYAPGVPIILVGTKLDLRDDKQFFIDHPGAV 136
           + F+  F++ +  S+E++   ++ I  +K  +  VP++LVG K DL            A 
Sbjct: 81  EGFLCVFAINNTKSFEDIHQYREQIKRVKD-SDDVPMVLVGNKCDL-----------AAR 128
Query: 137 PISTAQGEELRKLIGAPAYIECSSKTQQNVKAVFDAAIRVV 177
            + + Q ++L +  G P YIE S+KT+Q V+  F   +R +
Sbjct: 129 TVESRQAQDLARSYGIP-YIETSAKTRQGVEDAFYTLVREI 168

>pdb|2FU5|C Chain C, Structure Of Rab8 In Complex With Mss4 Length = 183

Iteration: 1
 Score = 87.8 bits (216), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 48/165 (29%), Positives = 90/165 (54%), Gaps = 14/165 (8%)
Query: 8   KCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVV-VNGSTVNLGLWDTAGQED 66
           K + +GD  VGKTC+L  ++ + F + ++ T+  +F    + ++G  + L +WDTAGQE 
Sbjct: 10  KLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQER 69
Query: 67  YNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPG-VPIILVGTKLDLRDD 125
           +  +    YRGA   +L + + ++ S++N+ + WI  ++ +A   V  +++G K D+ D 
Sbjct: 70  FRTITTAYYRGAMGIMLVYDITNEKSFDNI-RNWIRNIEEHASADVEKMILGNKCDVNDK 128
Query: 126 KQFFIDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQQNVKAVF 170
           +Q          +S  +GE+L    G   ++E S+K   NV+  F
Sbjct: 129 RQ----------VSKERGEKLALDYGIK-FMETSAKANINVENAF 162

>pdb|2IEZ|A Chain A, Crystal Structure Of Mouse Rab27b Bound To Gdp In Monoclinic Space Group Length = 220

Iteration: 1
 Score = 87.8 bits (216), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 61/186 (32%), Positives = 93/186 (50%), Gaps = 25/186 (13%)
Query: 6   FIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVV------NGST-----V 54
            IK + +GD  VGKT  L  YT N F   ++ TV  +F    VV      +G++     V
Sbjct: 11  LIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYDTQGADGASGKAFKV 70
Query: 55  NLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELK--HYAPGVP 112
           +L LWDTAG E +  L    +R A  F+L F L S+ S+ NV + W+ +L+   Y     
Sbjct: 71  HLQLWDTAGLERFRSLTTAFFRDAMGFLLMFDLTSQQSFLNV-RNWMSQLQANAYCENPD 129
Query: 113 IILVGTKLDLRDDKQFFIDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQQNVKAVFDA 172
           I+L+G K DL D ++          ++  Q  EL +  G P Y E S+ T QNV+   + 
Sbjct: 130 IVLIGNKADLPDQRE----------VNERQARELAEKYGIP-YFETSAATGQNVEKSVET 178
Query: 173 AIRVVL 178
            + +++
Sbjct: 179 LLDLIM 184

>pdb|1OIW|A Chain A, X-ray Structure Of The Small G Protein Rab11a In Complex With Gtpgammas Length = 191

Iteration: 1
 Score = 87.8 bits (216), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 57/167 (34%), Positives = 86/167 (51%), Gaps = 14/167 (8%)
Query: 6   FIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSA-NVVVNGSTVNLGLWDTAGQ 64
             K V +GD  VGK+ LL  +T N F  +   T+   F+  ++ V+G T+   +WDTAG 
Sbjct: 29  LFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGL 88
Query: 65  EDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYA-PGVPIILVGTKLDLR 123
           E Y  +    YRGA   +L + +    +YENV ++W+ EL+ +A   + I+LVG K DLR
Sbjct: 89  ERYRAITSAYYRGAVGALLVYDIAKHLTYENV-ERWLKELRDHADSNIVIMLVGNKSDLR 147
Query: 124 DDKQFFIDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQQNVKAVF 170
                   H  AVP   A+    +      ++IE S+    NV+A F
Sbjct: 148 --------HLRAVPTDEARAFAEKN---GLSFIETSALDSTNVEAAF 183

>pdb|3LO5|A Chain A, Crystal Structure Of The Dominant Negative S17n Mutant Of Ras Length = 166

Iteration: 1
 Score = 87.8 bits (216), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 52/161 (32%), Positives = 86/161 (53%), Gaps = 15/161 (9%)
Query: 19  KTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGA 78
           K  L I    N F  +Y PT+ D++   VV++G T  L + DTAGQE+Y+ +R    R  
Sbjct: 16  KNALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTG 75
Query: 79  DVFILAFSLISKASYENVS--KKWIPELKHYAPGVPIILVGTKLDLRDDKQFFIDHPGAV 136
           + F+  F++ +  S+E++   ++ I  +K  +  VP++LVG K DL            A 
Sbjct: 76  EGFLCVFAINNTKSFEDIHQYREQIKRVKD-SDDVPMVLVGNKCDL-----------AAR 123
Query: 137 PISTAQGEELRKLIGAPAYIECSSKTQQNVKAVFDAAIRVV 177
            + + Q ++L +  G P YIE S+KT+Q V+  F   +R +
Sbjct: 124 TVESRQAQDLARSYGIP-YIETSAKTRQGVEDAFYTLVREI 163

>pdb|4Q21|A Chain A, Molecular Switch For Signal Transduction: Structural Differences Between Active And Inactive Forms Of Protooncogenic Ras Proteins Length = 189

Iteration: 1
 Score = 87.8 bits (216), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 52/161 (32%), Positives = 87/161 (54%), Gaps = 15/161 (9%)
Query: 19  KTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGA 78
           K+ L I    N F  +Y PT+ D++   VV++G T  L + DTAGQE+Y+ +R    R  
Sbjct: 16  KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTG 75
Query: 79  DVFILAFSLISKASYENVS--KKWIPELKHYAPGVPIILVGTKLDLRDDKQFFIDHPGAV 136
           + F+  F++ +  S+E++   ++ I  +K  +  VP++LVG K DL            A 
Sbjct: 76  EGFLCVFAINNTKSFEDIHQYREQIKRVKD-SDDVPMVLVGNKCDL-----------AAR 123
Query: 137 PISTAQGEELRKLIGAPAYIECSSKTQQNVKAVFDAAIRVV 177
            + + Q ++L +  G P YIE S+KT+Q V+  F   +R +
Sbjct: 124 TVESRQAQDLARSYGIP-YIETSAKTRQGVEDAFYTLVREI 163

>pdb|2QUZ|A Chain A, Crystal Structure Of The Activating H-Rask117r Mutant In Costello Syndrome, Bound To Mg-Gdp Length = 166

Iteration: 1
 Score = 87.4 bits (215), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 51/161 (31%), Positives = 87/161 (54%), Gaps = 15/161 (9%)
Query: 19  KTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGA 78
           K+ L I    N F  +Y PT+ D++   VV++G T  L + DTAGQE+Y+ +R    R  
Sbjct: 16  KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTG 75
Query: 79  DVFILAFSLISKASYENVS--KKWIPELKHYAPGVPIILVGTKLDLRDDKQFFIDHPGAV 136
           + F+  F++ +  S+E++   ++ I  +K  +  VP++LVG + DL            A 
Sbjct: 76  EGFLCVFAINNTKSFEDIHQYREQIKRVKD-SDDVPMVLVGNRCDL-----------AAR 123
Query: 137 PISTAQGEELRKLIGAPAYIECSSKTQQNVKAVFDAAIRVV 177
            + + Q ++L +  G P YIE S+KT+Q V+  F   +R +
Sbjct: 124 TVESRQAQDLARSYGIP-YIETSAKTRQGVEDAFYTLVREI 163

>pdb|3DDC|A Chain A, Crystal Structure Of Nore1a In Complex With Ras Length = 166

Iteration: 1
 Score = 87.4 bits (215), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 52/161 (32%), Positives = 86/161 (53%), Gaps = 15/161 (9%)
Query: 19  KTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGA 78
           K+ L I    N F   Y PT+ D++   VV++G T  L + DTAGQE+Y+ +R    R  
Sbjct: 16  KSALTIQLIQNHFVEKYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTG 75
Query: 79  DVFILAFSLISKASYENVS--KKWIPELKHYAPGVPIILVGTKLDLRDDKQFFIDHPGAV 136
           + F+  F++ +  S+E++   ++ I  +K  +  VP++LVG K DL            A 
Sbjct: 76  EGFLCVFAINNTKSFEDIHQYREQIKRVKD-SDDVPMVLVGNKCDL-----------AAR 123
Query: 137 PISTAQGEELRKLIGAPAYIECSSKTQQNVKAVFDAAIRVV 177
            + + Q ++L +  G P YIE S+KT+Q V+  F   +R +
Sbjct: 124 TVESRQAQDLARSYGIP-YIETSAKTRQGVEDAFYTLVREI 163

>pdb|2GZD|A Chain A, Crystal Structure Of Rab11 In Complex With Rab11-Fip2 Length = 173

Iteration: 1
 Score = 87.4 bits (215), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 57/167 (34%), Positives = 85/167 (50%), Gaps = 14/167 (8%)
Query: 6   FIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSA-NVVVNGSTVNLGLWDTAGQ 64
             K V +GD  VGK+ LL  +T N F  +   T+   F+  ++ V+G T+   +WDTAG 
Sbjct: 11  LFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGL 70
Query: 65  EDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYA-PGVPIILVGTKLDLR 123
           E Y  +    YRGA   +L + +    +YENV ++W+ EL+ +A   + I LVG K DLR
Sbjct: 71  ERYRAITSAYYRGAVGALLVYDIAKHLTYENV-ERWLKELRDHADSNIVIXLVGNKSDLR 129
Query: 124 DDKQFFIDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQQNVKAVF 170
                   H  AVP   A+    +      ++IE S+    NV+A F
Sbjct: 130 --------HLRAVPTDEARAFAEK---NGLSFIETSALDSTNVEAAF 165

>pdb|1EK0|A Chain A, Gppnhp-Bound Ypt51 At 1.48 A Resolution Length = 170

Iteration: 1
 Score = 87.4 bits (215), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 54/166 (32%), Positives = 86/166 (51%), Gaps = 11/166 (6%)
Query: 7   IKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNF-SANVVVNGSTVNLGLWDTAGQE 65
           IK V +G+ AVGK+ +++ + SN F  +  PT+   F +  V +N  TV   +WDTAGQE
Sbjct: 4   IKLVLLGEAAVGKSSIVLRFVSNDFAENKEPTIGAAFLTQRVTINEHTVKFEIWDTAGQE 63
Query: 66  DYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYA-PGVPIILVGTKLDLRD 124
            +  L P  YR A   ++ + +    S+   ++ W+ EL   A   + I LVG K+D   
Sbjct: 64  RFASLAPXYYRNAQAALVVYDVTKPQSFIK-ARHWVKELHEQASKDIIIALVGNKIDX-- 120
Query: 125 DKQFFIDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQQNVKAVF 170
                +   G   ++  +GE+L +  G   + E S+KT +NV  VF
Sbjct: 121 -----LQEGGERKVAREEGEKLAEEKGL-LFFETSAKTGENVNDVF 160

>pdb|2D7C|A Chain A, Crystal Structure Of Human Rab11 In Complex With Fip3 Rab- Binding Domain Length = 167

Iteration: 1
 Score = 87.0 bits (214), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 57/167 (34%), Positives = 85/167 (50%), Gaps = 14/167 (8%)
Query: 6   FIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSA-NVVVNGSTVNLGLWDTAGQ 64
             K V +GD  VGK+ LL  +T N F  +   T+   F+  ++ V+G T+   +WDTAG 
Sbjct: 5   LFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGL 64
Query: 65  EDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYA-PGVPIILVGTKLDLR 123
           E Y  +    YRGA   +L + +    +YENV ++W+ EL+ +A   + I LVG K DLR
Sbjct: 65  ERYRAITSAYYRGAVGALLVYDIAKHLTYENV-ERWLKELRDHADSNIVIXLVGNKSDLR 123
Query: 124 DDKQFFIDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQQNVKAVF 170
                   H  AVP   A+    +      ++IE S+    NV+A F
Sbjct: 124 --------HLRAVPTDEARAFAEK---NGLSFIETSALDSTNVEAAF 159

>pdb|1LFD|B Chain B, Crystal Structure Of The Active Ras Protein Complexed With The Ras-interacting Domain Of Ralgds Length = 167

Iteration: 1
 Score = 87.0 bits (214), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 52/161 (32%), Positives = 86/161 (53%), Gaps = 15/161 (9%)
Query: 19  KTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGA 78
           K+ L I    N F   Y PT+ D++   VV++G T  L + DTAGQE+Y+ +R    R  
Sbjct: 16  KSALTIQLIQNHFVDKYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTG 75
Query: 79  DVFILAFSLISKASYENVS--KKWIPELKHYAPGVPIILVGTKLDLRDDKQFFIDHPGAV 136
           + F+  F++ +  S+E++   ++ I  +K  +  VP++LVG K DL            A 
Sbjct: 76  EGFLCVFAINNTKSFEDIHQYREQIKRVKD-SDDVPMVLVGNKCDL-----------AAR 123
Query: 137 PISTAQGEELRKLIGAPAYIECSSKTQQNVKAVFDAAIRVV 177
            + + Q ++L +  G P YIE S+KT+Q V+  F   +R +
Sbjct: 124 TVESRQAQDLARSYGIP-YIETSAKTRQGVEDAFYTLVREI 163

>pdb|1IAQ|A Chain A, C-H-Ras P21 Protein Mutant With Thr 35 Replaced By Ser (T35s) Complexed With Guanosine-5'-[b,G-Imido] Triphosphate Length = 166

Iteration: 1
 Score = 87.0 bits (214), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 51/161 (31%), Positives = 87/161 (54%), Gaps = 15/161 (9%)
Query: 19  KTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGA 78
           K+ L I    N F  +Y P++ D++   VV++G T  L + DTAGQE+Y+ +R    R  
Sbjct: 16  KSALTIQLIQNHFVDEYDPSIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTG 75
Query: 79  DVFILAFSLISKASYENVS--KKWIPELKHYAPGVPIILVGTKLDLRDDKQFFIDHPGAV 136
           + F+  F++ +  S+E++   ++ I  +K  +  VP++LVG K DL            A 
Sbjct: 76  EGFLCVFAINNTKSFEDIHQYREQIKRVKD-SDDVPMVLVGNKCDL-----------AAR 123
Query: 137 PISTAQGEELRKLIGAPAYIECSSKTQQNVKAVFDAAIRVV 177
            + + Q ++L +  G P YIE S+KT+Q V+  F   +R +
Sbjct: 124 TVESRQAQDLARSYGIP-YIETSAKTRQGVEDAFYTLVREI 163

>pdb|3KKM|A Chain A, Crystal Structure Of H-Ras T35s In Complex With Gppnhp Length = 172

Iteration: 1
 Score = 86.7 bits (213), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 51/161 (31%), Positives = 87/161 (54%), Gaps = 15/161 (9%)
Query: 19  KTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGA 78
           K+ L I    N F  +Y P++ D++   VV++G T  L + DTAGQE+Y+ +R    R  
Sbjct: 22  KSALTIQLIQNHFVDEYDPSIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTG 81
Query: 79  DVFILAFSLISKASYENVS--KKWIPELKHYAPGVPIILVGTKLDLRDDKQFFIDHPGAV 136
           + F+  F++ +  S+E++   ++ I  +K  +  VP++LVG K DL            A 
Sbjct: 82  EGFLCVFAINNTKSFEDIHQYREQIKRVKD-SDDVPMVLVGNKCDL-----------AAR 129
Query: 137 PISTAQGEELRKLIGAPAYIECSSKTQQNVKAVFDAAIRVV 177
            + + Q ++L +  G P YIE S+KT+Q V+  F   +R +
Sbjct: 130 TVESRQAQDLARSYGIP-YIETSAKTRQGVEDAFYTLVREI 169

>pdb|2IEY|A Chain A, Crystal Structure Of Mouse Rab27b Bound To Gdp In Hexagonal Space Group Length = 195

Iteration: 1
 Score = 86.7 bits (213), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 61/185 (32%), Positives = 91/185 (49%), Gaps = 25/185 (13%)
Query: 6   FIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVV------NGST-----V 54
            IK + +GD  VGKT  L  YT N F   ++ TV  +F    VV      +G++     V
Sbjct: 11  LIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYDTQGADGASGKAFKV 70
Query: 55  NLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELK--HYAPGVP 112
           +L LWDTAG E +  L    +R A  F+L F L S+ S+ NV + W  +L+   Y     
Sbjct: 71  HLQLWDTAGLERFRSLTTAFFRDAXGFLLXFDLTSQQSFLNV-RNWXSQLQANAYCENPD 129
Query: 113 IILVGTKLDLRDDKQFFIDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQQNVKAVFDA 172
           I+L+G K DL D ++          ++  Q  EL +  G P Y E S+ T QNV+   + 
Sbjct: 130 IVLIGNKADLPDQRE----------VNERQARELAEKYGIP-YFETSAATGQNVEKSVET 178
Query: 173 AIRVV 177
            + ++
Sbjct: 179 LLDLI 183

>pdb|3K9N|A Chain A, Allosteric Modulation Of H-Ras Gtpase Length = 166

Iteration: 1
 Score = 86.7 bits (213), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 51/161 (31%), Positives = 87/161 (54%), Gaps = 15/161 (9%)
Query: 19  KTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGA 78
           K+ L I    N F  ++ PT+ D++   VV++G T  L + DTAGQE+Y+ +R    R  
Sbjct: 16  KSALTIQLIQNHFVDEFDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTG 75
Query: 79  DVFILAFSLISKASYENVS--KKWIPELKHYAPGVPIILVGTKLDLRDDKQFFIDHPGAV 136
           + F+  F++ +  S+E++   ++ I  +K  +  VP++LVG K DL            A 
Sbjct: 76  EGFLCVFAINNTKSFEDIHQYREQIKRVKD-SDDVPMVLVGNKCDL-----------AAR 123
Query: 137 PISTAQGEELRKLIGAPAYIECSSKTQQNVKAVFDAAIRVV 177
            + + Q ++L +  G P YIE S+KT+Q V+  F   +R +
Sbjct: 124 TVESRQAQDLARSYGIP-YIETSAKTRQGVEDAFYTLVREI 163

>pdb|1LF0|A Chain A, Crystal Structure Of Rasa59g In The Gtp-Bound Form Length = 166

Iteration: 1
 Score = 86.7 bits (213), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 51/161 (31%), Positives = 86/161 (53%), Gaps = 15/161 (9%)
Query: 19  KTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGA 78
           K+ L I    N F  +Y PT+ D++   VV++G T  L + DT GQE+Y+ +R    R  
Sbjct: 16  KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTGGQEEYSAMRDQYMRTG 75
Query: 79  DVFILAFSLISKASYENVS--KKWIPELKHYAPGVPIILVGTKLDLRDDKQFFIDHPGAV 136
           + F+  F++ +  S+E++   ++ I  +K  +  VP++LVG K DL            A 
Sbjct: 76  EGFLCVFAINNTKSFEDIHQYREQIKRVKD-SDDVPMVLVGNKCDL-----------AAR 123
Query: 137 PISTAQGEELRKLIGAPAYIECSSKTQQNVKAVFDAAIRVV 177
            + + Q ++L +  G P YIE S+KT+Q V+  F   +R +
Sbjct: 124 TVESRQAQDLARSYGIP-YIETSAKTRQGVEDAFYTLVREI 163

>pdb|521P|A Chain A, Three-Dimensional Structures Of H-Ras P21 Mutants: Molecular Basis For Their Inability To Function As Signal Switch Molecules Length = 166

Iteration: 1
 Score = 86.7 bits (213), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 51/161 (31%), Positives = 86/161 (53%), Gaps = 15/161 (9%)
Query: 19  KTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGA 78
           K+ L I    N F  +Y PT+ D++   VV++G T  L + DT GQE+Y+ +R    R  
Sbjct: 16  KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTTGQEEYSAMRDQYMRTG 75
Query: 79  DVFILAFSLISKASYENVS--KKWIPELKHYAPGVPIILVGTKLDLRDDKQFFIDHPGAV 136
           + F+  F++ +  S+E++   ++ I  +K  +  VP++LVG K DL            A 
Sbjct: 76  EGFLCVFAINNTKSFEDIHQYREQIKRVKD-SDDVPMVLVGNKCDL-----------AAR 123
Query: 137 PISTAQGEELRKLIGAPAYIECSSKTQQNVKAVFDAAIRVV 177
            + + Q ++L +  G P YIE S+KT+Q V+  F   +R +
Sbjct: 124 TVESRQAQDLARSYGIP-YIETSAKTRQGVEDAFYTLVREI 163

>pdb|2ZET|A Chain A, Crystal Structure Of The Small Gtpase Rab27b Complexed With The Slp Homology Domain Of Slac2-AMELANOPHILIN Length = 203

Iteration: 1
 Score = 86.7 bits (213), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 61/185 (32%), Positives = 91/185 (49%), Gaps = 25/185 (13%)
Query: 6   FIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVV------NGST-----V 54
            IK + +GD  VGKT  L  YT N F   ++ TV  +F    VV      +G++     V
Sbjct: 11  LIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYDTQGADGASGKAFKV 70
Query: 55  NLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELK--HYAPGVP 112
           +L LWDTAG E +  L    +R A  F+L F L S+ S+ NV + W  +L+   Y     
Sbjct: 71  HLQLWDTAGLERFRSLTTAFFRDAXGFLLXFDLTSQQSFLNV-RNWXSQLQANAYCENPD 129
Query: 113 IILVGTKLDLRDDKQFFIDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQQNVKAVFDA 172
           I+L+G K DL D ++          ++  Q  EL +  G P Y E S+ T QNV+   + 
Sbjct: 130 IVLIGNKADLPDQRE----------VNERQARELAEKYGIP-YFETSAATGQNVEKSVET 178
Query: 173 AIRVV 177
            + ++
Sbjct: 179 LLDLI 183

>pdb|221P|A Chain A, Three-Dimensional Structures Of H-Ras P21 Mutants: Molecular Basis For Their Inability To Function As Signal Switch Molecules Length = 166

Iteration: 1
 Score = 86.7 bits (213), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 51/161 (31%), Positives = 87/161 (54%), Gaps = 15/161 (9%)
Query: 19  KTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGA 78
           K+ L I    N F  +Y PT+ +++   VV++G T  L + DTAGQE+Y+ +R    R  
Sbjct: 16  KSALTIQLIQNHFVDEYDPTIEESYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTG 75
Query: 79  DVFILAFSLISKASYENVS--KKWIPELKHYAPGVPIILVGTKLDLRDDKQFFIDHPGAV 136
           + F+  F++ +  S+E++   ++ I  +K  +  VP++LVG K DL            A 
Sbjct: 76  EGFLCVFAINNTKSFEDIHQYREQIKRVKD-SDDVPMVLVGNKCDL-----------AAR 123
Query: 137 PISTAQGEELRKLIGAPAYIECSSKTQQNVKAVFDAAIRVV 177
            + + Q ++L +  G P YIE S+KT+Q V+  F   +R +
Sbjct: 124 TVESRQAQDLARSYGIP-YIETSAKTRQGVEDAFYTLVREI 163

>pdb|2RGB|A Chain A, Crystal Structure Of H-Rasq61k-Gppnhp Length = 166

Iteration: 1
 Score = 86.7 bits (213), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 51/161 (31%), Positives = 87/161 (54%), Gaps = 15/161 (9%)
Query: 19  KTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGA 78
           K+ L I    N F  +Y PT+ D++   VV++G T  L + DTAG+E+Y+ +R    R  
Sbjct: 16  KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGKEEYSAMRDQYMRTG 75
Query: 79  DVFILAFSLISKASYENVS--KKWIPELKHYAPGVPIILVGTKLDLRDDKQFFIDHPGAV 136
           + F+  F++ +  S+E++   ++ I  +K  +  VP++LVG K DL            A 
Sbjct: 76  EGFLCVFAINNTKSFEDIHQYREQIKRVKD-SDDVPMVLVGNKCDL-----------AAR 123
Query: 137 PISTAQGEELRKLIGAPAYIECSSKTQQNVKAVFDAAIRVV 177
            + + Q ++L +  G P YIE S+KT+Q V+  F   +R +
Sbjct: 124 TVESRQAQDLARSYGIP-YIETSAKTRQGVEDAFYTLVREI 163

>pdb|2ERY|A Chain A, The Crystal Structure Of The Ras Related Protein Rras2 (Rras2) In The Gdp Bound State Length = 172

Iteration: 1
 Score = 86.3 bits (212), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 50/161 (31%), Positives = 84/161 (52%), Gaps = 14/161 (8%)
Query: 19  KTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGA 78
           K+ L I +  + F TDY PT+ D+++   V++     L + DTAGQE++  +R    R  
Sbjct: 18  KSALTIQFIQSYFVTDYDPTIEDSYTKQCVIDDRAARLDILDTAGQEEFGAMREQYMRTG 77
Query: 79  DVFILAFSLISKASYENVSK--KWIPELKHYAPGVPIILVGTKLDLRDDKQFFIDHPGAV 136
           + F+L FS+  + S+E + K  + I  +K      P+IL+G K DL        DH   V
Sbjct: 78  EGFLLVFSVTDRGSFEEIYKFQRQILRVKD-RDEFPMILIGNKADL--------DHQRQV 128
Query: 137 PISTAQGEELRKLIGAPAYIECSSKTQQNVKAVFDAAIRVV 177
             +  +G++L + +    Y+E S+K + NV   F   +RV+
Sbjct: 129 --TQEEGQQLARQLKV-TYMEASAKIRMNVDQAFHELVRVI 166

>pdb|621P|A Chain A, Three-Dimensional Structures Of H-Ras P21 Mutants: Molecular Basis For Their Inability To Function As Signal Switch Molecules Length = 166

Iteration: 1
 Score = 86.3 bits (212), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 51/161 (31%), Positives = 86/161 (53%), Gaps = 15/161 (9%)
Query: 19  KTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGA 78
           K+ L I    N F  +Y PT+ D++   VV++G T  L + DTAG E+Y+ +R    R  
Sbjct: 16  KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGHEEYSAMRDQYMRTG 75
Query: 79  DVFILAFSLISKASYENVS--KKWIPELKHYAPGVPIILVGTKLDLRDDKQFFIDHPGAV 136
           + F+  F++ +  S+E++   ++ I  +K  +  VP++LVG K DL            A 
Sbjct: 76  EGFLCVFAINNTKSFEDIHQYREQIKRVKD-SDDVPMVLVGNKCDL-----------AAR 123
Query: 137 PISTAQGEELRKLIGAPAYIECSSKTQQNVKAVFDAAIRVV 177
            + + Q ++L +  G P YIE S+KT+Q V+  F   +R +
Sbjct: 124 TVESRQAQDLARSYGIP-YIETSAKTRQGVEDAFYTLVREI 163

>pdb|2Y8E|A Chain A, Crystal Structure Of D. Melanogaster Rab6 Gtpase Bound To Gmppnp Length = 179

Iteration: 1
 Score = 86.3 bits (212), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 57/168 (33%), Positives = 86/168 (51%), Gaps = 14/168 (8%)
Query: 5   RFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTV-FDNFSANVVVNGSTVNLGLWDTAG 63
           R  K V +G+ +VGKT L+  +  ++F   Y  T+  D  S  + +   TV L LWDTAG
Sbjct: 13  RKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAG 72
Query: 64  QEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELK-HYAPGVPIILVGTKLDL 122
           QE +  L P   R + V ++ + + +  S+   S KWI +++      V I+LVG K DL
Sbjct: 73  QERFRSLIPSYIRDSTVAVVVYDITNTNSFHQTS-KWIDDVRTERGSDVIIMLVGNKTDL 131
Query: 123 RDDKQFFIDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQQNVKAVF 170
            D +Q          +ST +GE   K +    +IE S+K   NVK +F
Sbjct: 132 SDKRQ----------VSTEEGERKAKELNV-MFIETSAKAGYNVKQLF 168

>pdb|1XJ0|A Chain A, Crystal Structure Of The Gdp-Bound Form Of The Rasg60a Mutant Length = 166

Iteration: 1
 Score = 86.3 bits (212), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 51/161 (31%), Positives = 86/161 (53%), Gaps = 15/161 (9%)
Query: 19  KTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGA 78
           K+ L I    N F  +Y PT+ D++   VV++G T  L + DTA QE+Y+ +R    R  
Sbjct: 16  KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAAQEEYSAMRDQYMRTG 75
Query: 79  DVFILAFSLISKASYENVS--KKWIPELKHYAPGVPIILVGTKLDLRDDKQFFIDHPGAV 136
           + F+  F++ +  S+E++   ++ I  +K  +  VP++LVG K DL            A 
Sbjct: 76  EGFLCVFAINNTKSFEDIHQYREQIKRVKD-SDDVPMVLVGNKXDL-----------AAR 123
Query: 137 PISTAQGEELRKLIGAPAYIECSSKTQQNVKAVFDAAIRVV 177
            + + Q ++L +  G P YIE S+KT+Q V+  F   +R +
Sbjct: 124 TVESRQAQDLARSYGIP-YIETSAKTRQGVEDAFYTLVREI 163

>pdb|1XCM|A Chain A, Crystal Structure Of The Gppnhp-Bound H-Ras G60a Mutant Length = 167

Iteration: 1
 Score = 86.3 bits (212), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 51/161 (31%), Positives = 86/161 (53%), Gaps = 15/161 (9%)
Query: 19  KTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGA 78
           K+ L I    N F  +Y PT+ D++   VV++G T  L + DTA QE+Y+ +R    R  
Sbjct: 16  KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAAQEEYSAMRDQYMRTG 75
Query: 79  DVFILAFSLISKASYENVS--KKWIPELKHYAPGVPIILVGTKLDLRDDKQFFIDHPGAV 136
           + F+  F++ +  S+E++   ++ I  +K  +  VP++LVG K DL            A 
Sbjct: 76  EGFLCVFAINNTKSFEDIHQYREQIKRVKD-SDDVPMVLVGNKXDL-----------AAR 123
Query: 137 PISTAQGEELRKLIGAPAYIECSSKTQQNVKAVFDAAIRVV 177
            + + Q ++L +  G P YIE S+KT+Q V+  F   +R +
Sbjct: 124 TVESRQAQDLARSYGIP-YIETSAKTRQGVEDAFYTLVREI 163

>pdb|2FE4|A Chain A, The Crystal Structure Of Human Neuronal Rab6b In Its Inactive Gdp-Bound Form Length = 171

Iteration: 1
 Score = 86.3 bits (212), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 56/165 (33%), Positives = 88/165 (53%), Gaps = 14/165 (8%)
Query: 8   KCVTVGDGAVGKTCLLISYTSNTFPTDYVPTV-FDNFSANVVVNGSTVNLGLWDTAGQED 66
           K V +G+ +VGKT L+  +  ++F   Y  T+  D  S  + +   TV L LWDTAGQE 
Sbjct: 4   KLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER 63
Query: 67  YNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELK-HYAPGVPIILVGTKLDLRDD 125
           +  L P   R + V ++ + + +  S++  S KWI +++      V I+LVG K DL D 
Sbjct: 64  FRSLIPSYIRDSTVAVVVYDITNLNSFQQTS-KWIDDVRTERGSDVIIMLVGNKTDLADK 122
Query: 126 KQFFIDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQQNVKAVF 170
           +Q          I+  +GE+  K + +  +IE S+KT  NVK +F
Sbjct: 123 RQ----------ITIEEGEQRAKEL-SVMFIETSAKTGYNVKQLF 156

>pdb|3I3S|R Chain R, Crystal Structure Of H-Ras With Thr50 Replaced By Isoleucine Length = 166

Iteration: 1
 Score = 85.9 bits (211), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 51/161 (31%), Positives = 86/161 (53%), Gaps = 15/161 (9%)
Query: 19  KTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGA 78
           K+ L I    N F  +Y PT+ D++   VV++G    L + DTAGQE+Y+ +R    R  
Sbjct: 16  KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGEICLLDILDTAGQEEYSAMRDQYMRTG 75
Query: 79  DVFILAFSLISKASYENVS--KKWIPELKHYAPGVPIILVGTKLDLRDDKQFFIDHPGAV 136
           + F+  F++ +  S+E++   ++ I  +K  +  VP++LVG K DL            A 
Sbjct: 76  EGFLCVFAINNTKSFEDIHQYREQIKRVKD-SDDVPMVLVGNKCDL-----------AAR 123
Query: 137 PISTAQGEELRKLIGAPAYIECSSKTQQNVKAVFDAAIRVV 177
            + + Q ++L +  G P YIE S+KT+Q V+  F   +R +
Sbjct: 124 TVESRQAQDLARSYGIP-YIETSAKTRQGVEDAFYTLVREI 163

>pdb|4FMC|F Chain F, Espg-Rab1 Complex Length = 117

Iteration: 1
 Score = 85.5 bits (210), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 42/113 (37%), Positives = 67/113 (59%), Gaps = 3/113 (2%)
Query: 12  VGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVV-VNGSTVNLGLWDTAGQEDYNRL 70
           +GD  VGK+CLL+ +  +T+   Y+ T+  +F    + ++G T+ L +WDTAGQE +  +
Sbjct: 4   IGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTI 63
Query: 71  RPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYA-PGVPIILVGTKLDL 122
               YRGA   I+ + +  + S+ NV K+W+ E+  YA   V  +LVG K DL
Sbjct: 64  TSSYYRGAHGIIVVYDVTDQESFNNV-KQWLQEIDRYASENVNKLLVGNKCDL 115

>pdb|2GF9|A Chain A, Crystal Structure Of Human Rab3d In Complex With Gdp Length = 189

Iteration: 1
 Score = 85.1 bits (209), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 56/173 (32%), Positives = 87/173 (50%), Gaps = 14/173 (8%)
Query: 7   IKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVV-NGSTVNLGLWDTAGQE 65
            K + +G+ +VGKT  L  Y  ++F   +V TV  +F    V  +   + L +WDTAGQE
Sbjct: 23  FKLLLIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTVYRHDKRIKLQIWDTAGQE 82
Query: 66  DYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYA-PGVPIILVGTKLDLRD 124
            Y  +    YRGA  F+L + + ++ S+  V + W  ++K Y+     +ILVG K DL D
Sbjct: 83  RYRTITTAYYRGAMGFLLMYDIANQESFAAV-QDWATQIKTYSWDNAQVILVGNKCDLED 141
Query: 125 DKQFFIDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQQNVKAVFDAAIRVV 177
           ++         VP     G  L   +G   + E S+K   NVK VF+  + V+
Sbjct: 142 ER--------VVP--AEDGRRLADDLGFE-FFEASAKENINVKQVFERLVDVI 183

>pdb|1ZW6|A Chain A, Crystal Structure Of The Gtp-Bound Form Of Rasq61g Length = 166

Iteration: 1
 Score = 85.1 bits (209), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 51/161 (31%), Positives = 86/161 (53%), Gaps = 15/161 (9%)
Query: 19  KTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGA 78
           K+ L I    N F  +Y PT+ D++   VV++G T  L + DTAG E+Y+ +R    R  
Sbjct: 16  KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETXLLDILDTAGGEEYSAMRDQYMRTG 75
Query: 79  DVFILAFSLISKASYENVS--KKWIPELKHYAPGVPIILVGTKLDLRDDKQFFIDHPGAV 136
           + F+  F++ +  S+E++   ++ I  +K  +  VP++LVG K DL            A 
Sbjct: 76  EGFLCVFAINNTKSFEDIHQYREQIKRVKD-SDDVPMVLVGNKCDL-----------AAR 123
Query: 137 PISTAQGEELRKLIGAPAYIECSSKTQQNVKAVFDAAIRVV 177
            + + Q ++L +  G P YIE S+KT+Q V+  F   +R +
Sbjct: 124 TVESRQAQDLARSYGIP-YIETSAKTRQGVEDAFYTLVREI 163

>pdb|1ZVQ|A Chain A, Structure Of The Q61g Mutant Of Ras In The Gdp-Bound Form Length = 166

Iteration: 1
 Score = 85.1 bits (209), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 51/161 (31%), Positives = 86/161 (53%), Gaps = 15/161 (9%)
Query: 19  KTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGA 78
           K+ L I    N F  +Y PT+ D++   VV++G T  L + DTAG E+Y+ +R    R  
Sbjct: 16  KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGGEEYSAMRDQYMRTG 75
Query: 79  DVFILAFSLISKASYENVS--KKWIPELKHYAPGVPIILVGTKLDLRDDKQFFIDHPGAV 136
           + F+  F++ +  S+E++   ++ I  +K  +  VP++LVG K DL            A 
Sbjct: 76  EGFLCVFAINNTKSFEDIHQYREQIKRVKD-SDDVPMVLVGNKCDL-----------AAR 123
Query: 137 PISTAQGEELRKLIGAPAYIECSSKTQQNVKAVFDAAIRVV 177
            + + Q ++L +  G P YIE S+KT+Q V+  F   +R +
Sbjct: 124 TVESRQAQDLARSYGIP-YIETSAKTRQGVEDAFYTLVREI 163

>pdb|721P|A Chain A, Three-Dimensional Structures Of H-Ras P21 Mutants: Molecular Basis For Their Inability To Function As Signal Switch Molecules Length = 166

Iteration: 1
 Score = 85.1 bits (209), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 51/161 (31%), Positives = 86/161 (53%), Gaps = 15/161 (9%)
Query: 19  KTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGA 78
           K+ L I    N F  +Y PT+ D++   VV++G T  L + DTAG E+Y+ +R    R  
Sbjct: 16  KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGLEEYSAMRDQYMRTG 75
Query: 79  DVFILAFSLISKASYENVS--KKWIPELKHYAPGVPIILVGTKLDLRDDKQFFIDHPGAV 136
           + F+  F++ +  S+E++   ++ I  +K  +  VP++LVG K DL            A 
Sbjct: 76  EGFLCVFAINNTKSFEDIHQYREQIKRVKD-SDDVPMVLVGNKCDL-----------AAR 123
Query: 137 PISTAQGEELRKLIGAPAYIECSSKTQQNVKAVFDAAIRVV 177
            + + Q ++L +  G P YIE S+KT+Q V+  F   +R +
Sbjct: 124 TVESRQAQDLARSYGIP-YIETSAKTRQGVEDAFYTLVREI 163

>pdb|3BRW|D Chain D, Structure Of The Rap-Rapgap Complex Length = 167

Iteration: 1
 Score = 85.1 bits (209), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 50/175 (28%), Positives = 88/175 (50%), Gaps = 13/175 (7%)
Query: 5   RFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQ 64
           R  K V +G G VGK+ L + +    F   Y PT+ D++   V V+     L + DTAG 
Sbjct: 2   REYKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDAQQCMLEILDTAGT 61
Query: 65  EDYNRLRPLSYRGADVFILAFSLISKASYENVS--KKWIPELKHYAPGVPIILVGTKLDL 122
           E +  +R L  +    F L +S+ +++++ ++   ++ I  +K     VP+ILVG K DL
Sbjct: 62  EQFTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKD-TDDVPMILVGNKCDL 120
Query: 123 RDDKQFFIDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQQNVKAVFDAAIRVV 177
            D++           +   QG+ L +     A++E S+K++ NV  +F   +R +
Sbjct: 121 EDER----------VVGKEQGQNLARQWNNCAFLESSAKSKINVNEIFYDLVRQI 165

>pdb|2RGC|A Chain A, Crystal Structure Of H-Rasq61v-Gppnhp Length = 166

Iteration: 1
 Score = 84.7 bits (208), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 51/161 (31%), Positives = 86/161 (53%), Gaps = 15/161 (9%)
Query: 19  KTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGA 78
           K+ L I    N F  +Y PT+ D++   VV++G T  L + DTAG E+Y+ +R    R  
Sbjct: 16  KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGVEEYSAMRDQYMRTG 75
Query: 79  DVFILAFSLISKASYENVS--KKWIPELKHYAPGVPIILVGTKLDLRDDKQFFIDHPGAV 136
           + F+  F++ +  S+E++   ++ I  +K  +  VP++LVG K DL            A 
Sbjct: 76  EGFLCVFAINNTKSFEDIHQYREQIKRVKD-SDDVPMVLVGNKCDL-----------AAR 123
Query: 137 PISTAQGEELRKLIGAPAYIECSSKTQQNVKAVFDAAIRVV 177
            + + Q ++L +  G P YIE S+KT+Q V+  F   +R +
Sbjct: 124 TVESRQAQDLARSYGIP-YIETSAKTRQGVEDAFYTLVREI 163

>pdb|1ZBD|A Chain A, Structural Basis Of Rab Effector Specificity: Crystal Structure Of The Small G Protein Rab3a Complexed With The Effector Domain Of Rabphilin-3a Length = 203

Iteration: 1
 Score = 84.7 bits (208), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 52/173 (30%), Positives = 87/173 (50%), Gaps = 14/173 (8%)
Query: 7   IKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVV-NGSTVNLGLWDTAGQE 65
            K + +G+ +VGKT  L  Y  ++F   +V TV  +F    +  N   + L +WDTAG E
Sbjct: 9   FKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDTAGLE 68
Query: 66  DYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYA-PGVPIILVGTKLDLRD 124
            Y  +    YRGA  FIL + + ++ S+ N  + W  ++K Y+     ++LVG K D  D
Sbjct: 69  RYRTITTAYYRGAXGFILXYDITNEESF-NAVQDWSTQIKTYSWDNAQVLLVGNKCDXED 127
Query: 125 DKQFFIDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQQNVKAVFDAAIRVV 177
           ++           +S+ +G +L   +G   + E S+K   NVK  F+  + V+
Sbjct: 128 ER----------VVSSERGRQLADHLGFE-FFEASAKDNINVKQTFERLVDVI 169

>pdb|1NVV|Q Chain Q, Structural Evidence For Feedback Activation By Rasgtp Of The Ras-specific Nucleotide Exchange Factor Sos Length = 166

Iteration: 1
 Score = 84.7 bits (208), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 51/161 (31%), Positives = 86/161 (53%), Gaps = 15/161 (9%)
Query: 19  KTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGA 78
           K+ L I    N F  +Y PT+ D++   VV++G T  L + DTAGQE+ + +R    R  
Sbjct: 16  KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEASAMRDQYMRTG 75
Query: 79  DVFILAFSLISKASYENVS--KKWIPELKHYAPGVPIILVGTKLDLRDDKQFFIDHPGAV 136
           + F+  F++ +  S+E++   ++ I  +K  +  VP++LVG K DL            A 
Sbjct: 76  EGFLCVFAINNTKSFEDIHQYREQIKRVKD-SDDVPMVLVGNKCDL-----------AAR 123
Query: 137 PISTAQGEELRKLIGAPAYIECSSKTQQNVKAVFDAAIRVV 177
            + + Q ++L +  G P YIE S+KT+Q V+  F   +R +
Sbjct: 124 TVESRQAQDLARSYGIP-YIETSAKTRQGVEDAFYTLVREI 163

>pdb|4EPX|A Chain A, Discovery Of Small Molecules That Bind To K-Ras And Inhibit Sos- Mediated Activation Length = 170

Iteration: 1
 Score = 84.7 bits (208), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 52/161 (32%), Positives = 86/161 (53%), Gaps = 15/161 (9%)
Query: 19  KTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGA 78
           K+ L I    N F  +Y PT+ D++   VV++G T  L + DTAGQE+Y+ +R    R  
Sbjct: 17  KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTG 76
Query: 79  DVFILAFSLISKASYENVS--KKWIPELKHYAPGVPIILVGTKLDLRDDKQFFIDHPGAV 136
           + F+  F++ +  S+E++   ++ I  +K  +  VP++LVG K DL          P   
Sbjct: 77  EGFLCVFAINNTKSFEDIHHYREQIKRVKD-SEDVPMVLVGNKSDL----------PSRT 125
Query: 137 PISTAQGEELRKLIGAPAYIECSSKTQQNVKAVFDAAIRVV 177
            + T Q ++L +  G P +IE S+KT+Q V   F   +R +
Sbjct: 126 -VDTKQAQDLARSYGIP-FIETSAKTRQGVDDAFYTLVREI 164

>pdb|4EPT|A Chain A, Discovery Of Small Molecules That Bind To K-Ras And Inhibit Sos- Mediated Activation Length = 170

Iteration: 1
 Score = 84.7 bits (208), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 52/161 (32%), Positives = 86/161 (53%), Gaps = 15/161 (9%)
Query: 19  KTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGA 78
           K+ L I    N F  +Y PT+ D++   VV++G T  L + DTAGQE+Y+ +R    R  
Sbjct: 17  KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTG 76
Query: 79  DVFILAFSLISKASYENVS--KKWIPELKHYAPGVPIILVGTKLDLRDDKQFFIDHPGAV 136
           + F+  F++ +  S+E++   ++ I  +K  +  VP++LVG K DL          P   
Sbjct: 77  EGFLCVFAINNTKSFEDIHHYREQIKRVKD-SEDVPMVLVGNKSDL----------PSRT 125
Query: 137 PISTAQGEELRKLIGAPAYIECSSKTQQNVKAVFDAAIRVV 177
            + T Q ++L +  G P +IE S+KT+Q V   F   +R +
Sbjct: 126 -VDTKQAQDLARSYGIP-FIETSAKTRQGVDDAFYTLVREI 164

>pdb|2RGA|A Chain A, Crystal Structure Of H-Rasq61i-Gppnhp Length = 166

Iteration: 1
 Score = 84.7 bits (208), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 51/161 (31%), Positives = 86/161 (53%), Gaps = 15/161 (9%)
Query: 19  KTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGA 78
           K+ L I    N F  +Y PT+ D++   VV++G T  L + DTAG E+Y+ +R    R  
Sbjct: 16  KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGIEEYSAMRDQYMRTG 75
Query: 79  DVFILAFSLISKASYENVS--KKWIPELKHYAPGVPIILVGTKLDLRDDKQFFIDHPGAV 136
           + F+  F++ +  S+E++   ++ I  +K  +  VP++LVG K DL            A 
Sbjct: 76  EGFLCVFAINNTKSFEDIHQYREQIKRVKD-SDDVPMVLVGNKCDL-----------AAR 123
Query: 137 PISTAQGEELRKLIGAPAYIECSSKTQQNVKAVFDAAIRVV 177
            + + Q ++L +  G P YIE S+KT+Q V+  F   +R +
Sbjct: 124 TVESRQAQDLARSYGIP-YIETSAKTRQGVEDAFYTLVREI 163

>pdb|2IL1|A Chain A, Crystal Structure Of A Predicted Human Gtpase In Complex With Gdp Length = 192

Iteration: 1
 Score = 84.7 bits (208), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 51/166 (30%), Positives = 83/166 (50%), Gaps = 13/166 (7%)
Query: 7   IKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVV-VNGSTVNLGLWDTAGQE 65
           ++ + +G   VGKT L+  +T +TF      TV  +F    V + G  + L +WDTAGQE
Sbjct: 27  LQVIIIGSRGVGKTSLMERFTDDTFCEACKSTVGVDFKIKTVELRGKKIRLQIWDTAGQE 86
Query: 66  DYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYA-PGVPIILVGTKLDLRD 124
            +N +    YR A   IL + +  K +++++  KW+  +  YA     ++LVG KLD   
Sbjct: 87  RFNSITSAYYRSAKGIILVYDITKKETFDDLP-KWMKMIDKYASEDAELLLVGNKLDCET 145
Query: 125 DKQFFIDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQQNVKAVF 170
           D++          I+  QGE+  + I    + E S+K   NV  +F
Sbjct: 146 DRE----------ITRQQGEKFAQQITGMRFCEASAKDNFNVDEIF 181

>pdb|4EFN|A Chain A, Crystal Structure Of H-Ras Q61l In Complex With Gppnhp (State 1) Length = 171

Iteration: 1
 Score = 84.3 bits (207), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 51/161 (31%), Positives = 86/161 (53%), Gaps = 15/161 (9%)
Query: 19  KTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGA 78
           K+ L I    N F  +Y PT+ D++   VV++G T  L + DTAG E+Y+ +R    R  
Sbjct: 21  KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGLEEYSAMRDQYMRTG 80
Query: 79  DVFILAFSLISKASYENVS--KKWIPELKHYAPGVPIILVGTKLDLRDDKQFFIDHPGAV 136
           + F+  F++ +  S+E++   ++ I  +K  +  VP++LVG K DL            A 
Sbjct: 81  EGFLCVFAINNTKSFEDIHQYREQIKRVKD-SDDVPMVLVGNKCDL-----------AAR 128
Query: 137 PISTAQGEELRKLIGAPAYIECSSKTQQNVKAVFDAAIRVV 177
            + + Q ++L +  G P YIE S+KT+Q V+  F   +R +
Sbjct: 129 TVESRQAQDLARSYGIP-YIETSAKTRQGVEDAFYTLVREI 168

>pdb|3DZ8|A Chain A, Crystal Structure Of Human Rab3b Gtpase Bound With Gdp Length = 191

Iteration: 1
 Score = 84.3 bits (207), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 54/173 (31%), Positives = 89/173 (51%), Gaps = 14/173 (8%)
Query: 7   IKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVV-NGSTVNLGLWDTAGQE 65
            K + +G+ +VGKT  L  Y  +TF   +V TV  +F    V  +   V L +WDTAGQE
Sbjct: 24  FKLLIIGNSSVGKTSFLFRYADDTFTPAFVSTVGIDFKVKTVYRHEKRVKLQIWDTAGQE 83
Query: 66  DYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYA-PGVPIILVGTKLDLRD 124
            Y  +    YRGA  FIL + + ++ S+ N  + W  ++K Y+     +ILVG K D+ +
Sbjct: 84  RYRTITTAYYRGAMGFILMYDITNEESF-NAVQDWATQIKTYSWDNAQVILVGNKCDMEE 142
Query: 125 DKQFFIDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQQNVKAVFDAAIRVV 177
           ++         VP  T +G+ L + +G   + E S+K   +V+  F+  +  +
Sbjct: 143 ER--------VVP--TEKGQLLAEQLGFD-FFEASAKENISVRQAFERLVDAI 184

>pdb|3CON|A Chain A, Crystal Structure Of The Human Nras Gtpase Bound With Gdp Length = 190

Iteration: 1
 Score = 84.3 bits (207), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 54/161 (33%), Positives = 85/161 (52%), Gaps = 15/161 (9%)
Query: 19  KTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGA 78
           K+ L I    N F  +Y PT+ D++   VV++G T  L + DTAGQE+Y+ +R    R  
Sbjct: 34  KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTG 93
Query: 79  DVFILAFSLISKASYE--NVSKKWIPELKHYAPGVPIILVGTKLDLRDDKQFFIDHPGAV 136
           + F+  F++ +  S+   N+ ++ I  +K  +  VP++LVG K DL          P   
Sbjct: 94  EGFLCVFAINNSKSFADINLYREQIKRVKD-SDDVPMVLVGNKCDL----------PTRT 142
Query: 137 PISTAQGEELRKLIGAPAYIECSSKTQQNVKAVFDAAIRVV 177
            + T Q  EL K  G P +IE S+KT+Q V+  F   +R +
Sbjct: 143 -VDTKQAHELAKSYGIP-FIETSAKTRQGVEDAFYTLVREI 181

>pdb|1GUA|A Chain A, Human Rap1a, Residues 1-167, Double Mutant (E30d,K31e) Complexed With Gppnhp And The Ras-Binding-Domain Of Human C-Raf1, Residues 51-131 Length = 167

Iteration: 1
 Score = 84.3 bits (207), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 50/175 (28%), Positives = 89/175 (50%), Gaps = 13/175 (7%)
Query: 5   RFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQ 64
           R  K V +G G VGK+ L + +    F  +Y PT+ D++   V V+     L + DTAG 
Sbjct: 2   REYKLVVLGSGGVGKSALTVQFVQGIFVDEYDPTIEDSYRKQVEVDCQQCMLEILDTAGT 61
Query: 65  EDYNRLRPLSYRGADVFILAFSLISKASYENVS--KKWIPELKHYAPGVPIILVGTKLDL 122
           E +  +R L  +    F L +S+ +++++ ++   ++ I  +K     VP+ILVG K DL
Sbjct: 62  EQFTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKD-TEDVPMILVGNKCDL 120
Query: 123 RDDKQFFIDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQQNVKAVFDAAIRVV 177
            D++           +   QG+ L +     A++E S+K++ NV  +F   +R +
Sbjct: 121 EDER----------VVGKEQGQNLARQWCNCAFLESSAKSKINVNEIFYDLVRQI 165

>pdb|2CL0|X Chain X, Crystal Structure Analysis Of A Fluorescent Form Of H-Ras P21 In Complex With Gppnhp Length = 166

Iteration: 1
 Score = 84.0 bits (206), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 51/161 (31%), Positives = 86/161 (53%), Gaps = 15/161 (9%)
Query: 19  KTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGA 78
           K+ L I    N F  +  PT+ D++   VV++G T  L + DTAGQE+Y+ +R    R  
Sbjct: 16  KSALTIQLIQNHFVDECDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTG 75
Query: 79  DVFILAFSLISKASYENVS--KKWIPELKHYAPGVPIILVGTKLDLRDDKQFFIDHPGAV 136
           + F+  F++ +  S+E++   ++ I  +K  +  VP++LVG K DL            A 
Sbjct: 76  EGFLCVFAINNTKSFEDIHQYREQIKRVKD-SDDVPMVLVGNKSDL-----------AAR 123
Query: 137 PISTAQGEELRKLIGAPAYIECSSKTQQNVKAVFDAAIRVV 177
            + + Q ++L +  G P YIE S+KT+Q V+  F   +R +
Sbjct: 124 TVESRQAQDLARSYGIP-YIETSAKTRQGVEDAFYTLVREI 163

>pdb|2FG5|A Chain A, Crystal Structure Of Human Rab31 In Complex With A Gtp Analogue Length = 192

Iteration: 1
 Score = 84.0 bits (206), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 54/178 (30%), Positives = 94/178 (52%), Gaps = 14/178 (7%)
Query: 2   SASRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGL-WD 60
           SA R +K   +GD  VGK+ ++  +  + F  +  PT+  +F    V  G+ ++  L WD
Sbjct: 19  SAIRELKVCLLGDTGVGKSSIVCRFVQDHFDHNISPTIGASFMTKTVPCGNELHKFLIWD 78
Query: 61  TAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAP-GVPIILVGTK 119
           TAGQE ++ L P+ YRG+   ++ + +  + S+  + KKW+ ELK + P  + + + G K
Sbjct: 79  TAGQERFHSLAPMYYRGSAAAVIVYDITKQDSFYTL-KKWVKELKEHGPENIVMAIAGNK 137
Query: 120 LDLRDDKQFFIDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQQNVKAVFDAAIRVV 177
            DL D ++        VP+  A+  E  + IGA   +E S+K   N++ +F    R +
Sbjct: 138 CDLSDIRE--------VPLKDAK--EYAESIGA-IVVETSAKNAINIEELFQGISRQI 184

>pdb|1KY2|A Chain A, Gppnhp-Bound Ypt7p At 1.6 A Resolution Length = 182

Iteration: 1
 Score = 83.6 bits (205), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 54/179 (30%), Positives = 87/179 (48%), Gaps = 17/179 (9%)
Query: 7   IKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNF-SANVVVNGSTV-NLGLWDTAGQ 64
           +K + +GD  VGKT L+  Y ++ +   Y  T+  +F +  V V+G  V  + +WDTAGQ
Sbjct: 9   LKVIILGDSGVGKTSLMHRYVNDKYSQQYKATIGADFLTKEVTVDGDKVATMQVWDTAGQ 68
Query: 65  EDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYA-----PGVPIILVGTK 119
           E +  L    YRGAD  +L + + + +S+EN+ K W  E   +A        P +++G K
Sbjct: 69  ERFQSLGVAFYRGADCCVLVYDVTNASSFENI-KSWRDEFLVHANVNSPETFPFVILGNK 127
Query: 120 LDLRDDKQFFIDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQQNVKAVFDAAIRVVL 178
           +D  + K+          +S    +EL K +G       S+K   NV   F+   R  L
Sbjct: 128 IDAEESKKI---------VSEKSAQELAKSLGDIPLFLTSAKNAINVDTAFEEIARSAL 177

>pdb|1C1Y|A Chain A, Crystal Structure Of Rap.Gmppnp In Complex With The Ras- Binding-Domain Of C-Raf1 Kinase (Rafrbd) Length = 167

Iteration: 1
 Score = 83.6 bits (205), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 50/175 (28%), Positives = 88/175 (50%), Gaps = 13/175 (7%)
Query: 5   RFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQ 64
           R  K V +G G VGK+ L + +    F   Y PT+ D++   V V+     L + DTAG 
Sbjct: 2   REYKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDCQQCMLEILDTAGT 61
Query: 65  EDYNRLRPLSYRGADVFILAFSLISKASYENVS--KKWIPELKHYAPGVPIILVGTKLDL 122
           E +  +R L  +    F L +S+ +++++ ++   ++ I  +K     VP+ILVG K DL
Sbjct: 62  EQFTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKD-TEDVPMILVGNKCDL 120
Query: 123 RDDKQFFIDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQQNVKAVFDAAIRVV 177
            D++           +   QG+ L +     A++E S+K++ NV  +F   +R +
Sbjct: 121 EDER----------VVGKEQGQNLARQWCNCAFLESSAKSKINVNEIFYDLVRQI 165

>pdb|3GFT|A Chain A, Human K-Ras In Complex With A Gtp Analogue Length = 187

Iteration: 1
 Score = 83.2 bits (204), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 51/161 (31%), Positives = 85/161 (52%), Gaps = 15/161 (9%)
Query: 19  KTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGA 78
           K+ L I    N F  +Y PT+ D++   VV++G T  L + DTAG E+Y+ +R    R  
Sbjct: 34  KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGHEEYSAMRDQYMRTG 93
Query: 79  DVFILAFSLISKASYENVS--KKWIPELKHYAPGVPIILVGTKLDLRDDKQFFIDHPGAV 136
           + F+  F++ +  S+E++   ++ I  +K  +  VP++LVG K DL          P   
Sbjct: 94  EGFLCVFAINNTKSFEDIHHYREQIKRVKD-SEDVPMVLVGNKCDL----------PSRT 142
Query: 137 PISTAQGEELRKLIGAPAYIECSSKTQQNVKAVFDAAIRVV 177
            + T Q ++L +  G P +IE S+KT+Q V   F   +R +
Sbjct: 143 -VDTKQAQDLARSYGIP-FIETSAKTRQGVDDAFYTLVREI 181

>pdb|1TU3|A Chain A, Crystal Structure Of Rab5 Complex With Rabaptin5 C-Terminal Domain Length = 171

Iteration: 1
 Score = 82.8 bits (203), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 55/169 (32%), Positives = 87/169 (51%), Gaps = 16/169 (9%)
Query: 7   IKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNF-SANVVVNGSTVNLGLWDTAGQE 65
            K V +G+ AVGK+ L++ +    F      T+   F +  V ++ +TV   +WDTAGQE
Sbjct: 8   FKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQE 67
Query: 66  DYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYA-PGVPIILVGTKLDLRD 124
            Y+ L P+ YRGA   I+ + + ++ S+   +K W+ EL+  A P + I L G K DL +
Sbjct: 68  RYHSLAPMYYRGAQAAIVVYDITNEESFAR-AKNWVKELQRQASPNIVIALSGNKADLAN 126
Query: 125 DKQFFIDHPGAVPISTAQG-EELRKLIGAPAYIECSSKTQQNVKAVFDA 172
            +        AV    AQ   +   L+    ++E S+KT  NV  +F A
Sbjct: 127 KR--------AVDFQEAQSYADDNSLL----FMETSAKTSMNVNEIFMA 163

>pdb|1N6H|A Chain A, Crystal Structure Of Human Rab5a Length = 170

Iteration: 1
 Score = 82.8 bits (203), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 55/169 (32%), Positives = 87/169 (51%), Gaps = 16/169 (9%)
Query: 7   IKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNF-SANVVVNGSTVNLGLWDTAGQE 65
            K V +G+ AVGK+ L++ +    F      T+   F +  V ++ +TV   +WDTAGQE
Sbjct: 7   FKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQE 66
Query: 66  DYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYA-PGVPIILVGTKLDLRD 124
            Y+ L P+ YRGA   I+ + + ++ S+   +K W+ EL+  A P + I L G K DL +
Sbjct: 67  RYHSLAPMYYRGAQAAIVVYDITNEESFAR-AKNWVKELQRQASPNIVIALSGNKADLAN 125
Query: 125 DKQFFIDHPGAVPISTAQG-EELRKLIGAPAYIECSSKTQQNVKAVFDA 172
            +        AV    AQ   +   L+    ++E S+KT  NV  +F A
Sbjct: 126 KR--------AVDFQEAQSYADDNSLL----FMETSAKTSMNVNEIFMA 162

>pdb|2GIL|A Chain A, Structure Of The Extremely Slow Gtpase Rab6a In The Gtp Bound Form At 1.8 Resolution Length = 162

Iteration: 1
 Score = 82.4 bits (202), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 54/165 (32%), Positives = 85/165 (51%), Gaps = 14/165 (8%)
Query: 8   KCVTVGDGAVGKTCLLISYTSNTFPTDYVPTV-FDNFSANVVVNGSTVNLGLWDTAGQED 66
           K V +G+ +VGKT L+  +  ++F   Y  T+  D  S  + +   TV L LWDTAGQE 
Sbjct: 3   KLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER 62
Query: 67  YNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELK-HYAPGVPIILVGTKLDLRDD 125
           +  L P   R + V ++ + + +  S++  + KWI +++      V I+LVG K DL D 
Sbjct: 63  FRSLIPSYIRDSTVAVVVYDITNVNSFQQTT-KWIDDVRTERGSDVIIMLVGNKTDLADK 121
Query: 126 KQFFIDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQQNVKAVF 170
           +Q          +S  +GE   K +    +IE S+K   NVK +F
Sbjct: 122 RQ----------VSIEEGERKAKELNV-MFIETSAKAGYNVKQLF 155

>pdb|2O52|A Chain A, Crystal Structure Of Human Rab4b In Complex With Gdp Length = 200

Iteration: 1
 Score = 82.4 bits (202), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 55/176 (31%), Positives = 88/176 (50%), Gaps = 16/176 (9%)
Query: 6   FIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVV-VNGSTVNLGLWDTAGQ 64
             K + +G    GK+CLL  +  N F  D   T+   F + VV V G TV L +WDTAGQ
Sbjct: 25  LFKFLVIGSAGTGKSCLLHQFIENKFKQDSNHTIGVEFGSRVVNVGGKTVKLQIWDTAGQ 84
Query: 65  EDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYA-PGVPIILVGTKLDLR 123
           E +  +    YRGA   +L + + S+ +Y +++  W+ + +  A P + +IL G K DL 
Sbjct: 85  ERFRSVTRSYYRGAAGALLVYDITSRETYNSLA-AWLTDARTLASPNIVVILCGNKKDLD 143
Query: 124 DDKQF-FIDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQQNVKAVFDAAIRVVL 178
            +++  F++         AQ  EL        ++E S+ T +NV+  F    R +L
Sbjct: 144 PEREVTFLEAS-----RFAQENEL-------MFLETSALTGENVEEAFLKCARTIL 187

>pdb|3BC1|A Chain A, Crystal Structure Of The Complex Rab27a-slp2a Length = 195

Iteration: 1
 Score = 81.6 bits (200), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 55/186 (29%), Positives = 86/186 (46%), Gaps = 25/186 (13%)
Query: 6   FIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVV-----------NGSTV 54
            IK + +GD  VGKT +L  YT   F + ++ TV  +F    VV            G  +
Sbjct: 11  LIKFLALGDSGVGKTSVLYQYTDGKFNSKFITTVGIDFREKRVVYRANGPDGAVGRGQRI 70
Query: 55  NLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKH--YAPGVP 112
           +L LWDTAG E +  L    +R A  F+L F L ++ S+ NV + WI +L+   Y+    
Sbjct: 71  HLQLWDTAGLERFRSLTTAFFRDAMGFLLLFDLTNEQSFLNV-RNWISQLQMHAYSENPD 129
Query: 113 IILVGTKLDLRDDKQFFIDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQQNVKAVFDA 172
           I+L G K DL D +           +   +  EL +  G P Y E S+    N+    + 
Sbjct: 130 IVLCGNKSDLEDQR----------AVKEEEARELAEKYGIP-YFETSAANGTNISHAIEM 178
Query: 173 AIRVVL 178
            + +++
Sbjct: 179 LLDLIM 184

>pdb|1Z07|A Chain A, Gppnhp-Bound Rab5c G55q Mutant Gtpase Length = 166

Iteration: 1
 Score = 81.3 bits (199), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 54/168 (32%), Positives = 85/168 (50%), Gaps = 16/168 (9%)
Query: 8   KCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNF-SANVVVNGSTVNLGLWDTAGQED 66
           K V +G+ AVGK+ L++ +    F      T+   F +  V ++ +TV   +WDTAGQE 
Sbjct: 7   KLVLLGESAVGKSSLVLRFVKGQFHEYQESTIQAAFLTQTVCLDDTTVKFEIWDTAGQER 66
Query: 67  YNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYA-PGVPIILVGTKLDLRDD 125
           Y+ L P+ YRGA   I+ + + +  ++   +K W+ EL+  A P + I L G K DL   
Sbjct: 67  YHSLAPMYYRGAQAAIVVYDITNTDTFAR-AKNWVKELQRQASPNIVIALAGNKADLASK 125
Query: 126 KQFFIDHPGAVPISTAQG-EELRKLIGAPAYIECSSKTQQNVKAVFDA 172
           +        AV    AQ   +   L+    ++E S+KT  NV  +F A
Sbjct: 126 R--------AVEFQEAQAYADDNSLL----FMETSAKTAMNVNEIFMA 161

>pdb|1HUQ|A Chain A, 1.8a Crystal Structure Of The Monomeric Gtpase Rab5c (Mouse) Length = 164

Iteration: 1
 Score = 81.3 bits (199), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 54/168 (32%), Positives = 85/168 (50%), Gaps = 16/168 (9%)
Query: 8   KCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNF-SANVVVNGSTVNLGLWDTAGQED 66
           K V +G+ AVGK+ L++ +    F      T+   F +  V ++ +TV   +WDTAGQE 
Sbjct: 5   KLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQER 64
Query: 67  YNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYA-PGVPIILVGTKLDLRDD 125
           Y+ L P+ YRGA   I+ + + +  ++   +K W+ EL+  A P + I L G K DL   
Sbjct: 65  YHSLAPMYYRGAQAAIVVYDITNTDTFAR-AKNWVKELQRQASPNIVIALAGNKADLASK 123
Query: 126 KQFFIDHPGAVPISTAQG-EELRKLIGAPAYIECSSKTQQNVKAVFDA 172
           +        AV    AQ   +   L+    ++E S+KT  NV  +F A
Sbjct: 124 R--------AVEFQEAQAYADDNSLL----FMETSAKTAMNVNEIFMA 159

>pdb|4DXA|A Chain A, Co-Crystal Structure Of Rap1 In Complex With Krit1 Length = 169

Iteration: 1
 Score = 80.9 bits (198), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 49/175 (28%), Positives = 87/175 (49%), Gaps = 13/175 (7%)
Query: 5   RFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQ 64
           R  K V +G   VGK+ L + +    F   Y PT+ D++   V V+     L + DTAG 
Sbjct: 4   REYKLVVLGSVGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDAQQCMLEILDTAGT 63
Query: 65  EDYNRLRPLSYRGADVFILAFSLISKASYENVS--KKWIPELKHYAPGVPIILVGTKLDL 122
           E +  +R L  +    F L +S+ +++++ ++   ++ I  +K     VP+ILVG K DL
Sbjct: 64  EQFTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKD-TDDVPMILVGNKCDL 122
Query: 123 RDDKQFFIDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQQNVKAVFDAAIRVV 177
            D++           +   QG+ L +     A++E S+K++ NV  +F   +R +
Sbjct: 123 EDER----------VVGKEQGQNLARQWNNCAFLESSAKSKINVNEIFYDLVRQI 167

>pdb|1N6P|A Chain A, Crystal Structure Of Human Rab5a A30e Mutant Complex With Gppnhp Length = 170

Iteration: 1
 Score = 80.9 bits (198), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 54/169 (31%), Positives = 86/169 (50%), Gaps = 16/169 (9%)
Query: 7   IKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNF-SANVVVNGSTVNLGLWDTAGQE 65
            K V +G+  VGK+ L++ +    F      T+   F +  V ++ +TV   +WDTAGQE
Sbjct: 7   FKLVLLGESEVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQE 66
Query: 66  DYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYA-PGVPIILVGTKLDLRD 124
            Y+ L P+ YRGA   I+ + + ++ S+   +K W+ EL+  A P + I L G K DL +
Sbjct: 67  RYHSLAPMYYRGAQAAIVVYDITNEESFAR-AKNWVKELQRQASPNIVIALSGNKADLAN 125
Query: 125 DKQFFIDHPGAVPISTAQG-EELRKLIGAPAYIECSSKTQQNVKAVFDA 172
            +        AV    AQ   +   L+    ++E S+KT  NV  +F A
Sbjct: 126 KR--------AVDFQEAQSYADDNSLL----FMETSAKTSMNVNEIFMA 162

>pdb|1N6O|A Chain A, Crystal Structure Of Human Rab5a A30k Mutant Complex With Gppnhp Length = 170

Iteration: 1
 Score = 80.9 bits (198), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 54/169 (31%), Positives = 86/169 (50%), Gaps = 16/169 (9%)
Query: 7   IKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNF-SANVVVNGSTVNLGLWDTAGQE 65
            K V +G+  VGK+ L++ +    F      T+   F +  V ++ +TV   +WDTAGQE
Sbjct: 7   FKLVLLGESKVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQE 66
Query: 66  DYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYA-PGVPIILVGTKLDLRD 124
            Y+ L P+ YRGA   I+ + + ++ S+   +K W+ EL+  A P + I L G K DL +
Sbjct: 67  RYHSLAPMYYRGAQAAIVVYDITNEESFAR-AKNWVKELQRQASPNIVIALSGNKADLAN 125
Query: 125 DKQFFIDHPGAVPISTAQG-EELRKLIGAPAYIECSSKTQQNVKAVFDA 172
            +        AV    AQ   +   L+    ++E S+KT  NV  +F A
Sbjct: 126 KR--------AVDFQEAQSYADDNSLL----FMETSAKTSMNVNEIFMA 162

>pdb|1N6N|A Chain A, Crystal Structure Of Human Rab5a A30r Mutant Complex With Gppnhp Length = 170

Iteration: 1
 Score = 80.5 bits (197), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 54/169 (31%), Positives = 86/169 (50%), Gaps = 16/169 (9%)
Query: 7   IKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNF-SANVVVNGSTVNLGLWDTAGQE 65
            K V +G+  VGK+ L++ +    F      T+   F +  V ++ +TV   +WDTAGQE
Sbjct: 7   FKLVLLGESRVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQE 66
Query: 66  DYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYA-PGVPIILVGTKLDLRD 124
            Y+ L P+ YRGA   I+ + + ++ S+   +K W+ EL+  A P + I L G K DL +
Sbjct: 67  RYHSLAPMYYRGAQAAIVVYDITNEESFAR-AKNWVKELQRQASPNIVIALSGNKADLAN 125
Query: 125 DKQFFIDHPGAVPISTAQG-EELRKLIGAPAYIECSSKTQQNVKAVFDA 172
            +        AV    AQ   +   L+    ++E S+KT  NV  +F A
Sbjct: 126 KR--------AVDFQEAQSYADDNSLL----FMETSAKTSMNVNEIFMA 162

>pdb|1TU4|A Chain A, Crystal Structure Of Rab5-Gdp Complex Length = 171

Iteration: 1
 Score = 80.5 bits (197), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 55/169 (32%), Positives = 85/169 (50%), Gaps = 16/169 (9%)
Query: 7   IKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNF-SANVVVNGSTVNLGLWDTAGQE 65
            K V +G+ AVGK+ L++ +    F      T+   F +  V ++ +TV   +WDTAGQE
Sbjct: 8   FKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQE 67
Query: 66  DYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYA-PGVPIILVGTKLDLRD 124
            Y+ L P  YRGA   I+ + + ++ S+   +K W+ EL+  A P + I L G K DL +
Sbjct: 68  RYHSLAPXYYRGAQAAIVVYDITNEESFAR-AKNWVKELQRQASPNIVIALSGNKADLAN 126
Query: 125 DKQFFIDHPGAVPISTAQG-EELRKLIGAPAYIECSSKTQQNVKAVFDA 172
            +        AV    AQ   +   L+    + E S+KT  NV  +F A
Sbjct: 127 KR--------AVDFQEAQSYADDNSLL----FXETSAKTSXNVNEIFXA 163

>pdb|1N6R|A Chain A, Crystal Structure Of Human Rab5a A30l Mutant Complex With Gppnhp Length = 170

Iteration: 1
 Score = 80.5 bits (197), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 54/169 (31%), Positives = 86/169 (50%), Gaps = 16/169 (9%)
Query: 7   IKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNF-SANVVVNGSTVNLGLWDTAGQE 65
            K V +G+  VGK+ L++ +    F      T+   F +  V ++ +TV   +WDTAGQE
Sbjct: 7   FKLVLLGESLVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQE 66
Query: 66  DYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYA-PGVPIILVGTKLDLRD 124
            Y+ L P+ YRGA   I+ + + ++ S+   +K W+ EL+  A P + I L G K DL +
Sbjct: 67  RYHSLAPMYYRGAQAAIVVYDITNEESFAR-AKNWVKELQRQASPNIVIALSGNKADLAN 125
Query: 125 DKQFFIDHPGAVPISTAQG-EELRKLIGAPAYIECSSKTQQNVKAVFDA 172
            +        AV    AQ   +   L+    ++E S+KT  NV  +F A
Sbjct: 126 KR--------AVDFQEAQSYADDNSLL----FMETSAKTSMNVNEIFMA 162

>pdb|1YZQ|A Chain A, Gppnhp-Bound Rab6 Gtpase Length = 170

Iteration: 1
 Score = 80.5 bits (197), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 53/168 (31%), Positives = 85/168 (50%), Gaps = 14/168 (8%)
Query: 5   RFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTV-FDNFSANVVVNGSTVNLGLWDTAG 63
           R  K V +G+ +VGKT L+  +  ++F   Y  T+  D  S  + +   T+ L LWDTAG
Sbjct: 5   RKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTIRLQLWDTAG 64
Query: 64  QEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELK-HYAPGVPIILVGTKLDL 122
           QE +  L P   R +   ++ + + +  S++  + KWI +++      V I+LVG K DL
Sbjct: 65  QERFRSLIPSYIRDSAAAVVVYDITNVNSFQQTT-KWIDDVRTERGSDVIIMLVGNKTDL 123
Query: 123 RDDKQFFIDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQQNVKAVF 170
            D +Q          +S  +GE   K +    +IE S+K   NVK +F
Sbjct: 124 ADKRQ----------VSIEEGERKAKELNV-MFIETSAKAGYNVKQLF 160

>pdb|1N6I|A Chain A, Crystal Structure Of Human Rab5a A30p Mutant Complex With Gdp Length = 170

Iteration: 1
 Score = 80.5 bits (197), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 54/169 (31%), Positives = 86/169 (50%), Gaps = 16/169 (9%)
Query: 7   IKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNF-SANVVVNGSTVNLGLWDTAGQE 65
            K V +G+  VGK+ L++ +    F      T+   F +  V ++ +TV   +WDTAGQE
Sbjct: 7   FKLVLLGESPVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQE 66
Query: 66  DYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYA-PGVPIILVGTKLDLRD 124
            Y+ L P+ YRGA   I+ + + ++ S+   +K W+ EL+  A P + I L G K DL +
Sbjct: 67  RYHSLAPMYYRGAQAAIVVYDITNEESFAR-AKNWVKELQRQASPNIVIALSGNKADLAN 125
Query: 125 DKQFFIDHPGAVPISTAQG-EELRKLIGAPAYIECSSKTQQNVKAVFDA 172
            +        AV    AQ   +   L+    ++E S+KT  NV  +F A
Sbjct: 126 KR--------AVDFQEAQSYADDNSLL----FMETSAKTSMNVNEIFMA 162

>pdb|2A5J|A Chain A, Crystal Structure Of Human Rab2b Length = 191

Iteration: 1
 Score = 80.5 bits (197), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 48/170 (28%), Positives = 86/170 (50%), Gaps = 14/170 (8%)
Query: 3   ASRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVV-VNGSTVNLGLWDT 61
            S   K + +GD  VGK+CLL+ +T   F   +  T+   F A +V ++G  + L +WDT
Sbjct: 18  GSYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVNIDGKQIKLQIWDT 77
Query: 62  AGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELK-HYAPGVPIILVGTKL 120
           AGQE +  +    YRGA   +L + +  + ++ +++  W+ + + H +  + I+L+G K 
Sbjct: 78  AGQESFRSITRSYYRGAAGALLVYDITRRETFNHLT-SWLEDARQHSSSNMVIMLIGNKS 136
Query: 121 DLRDDKQFFIDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQQNVKAVF 170
           DL   +           +   +GE   +  G   ++E S+KT  NV+  F
Sbjct: 137 DLESRR----------DVKREEGEAFAREHGL-IFMETSAKTACNVEEAF 175

>pdb|2HEI|A Chain A, Crystal Structure Of Human Rab5b In Complex With Gdp Length = 179

Iteration: 1
 Score = 80.1 bits (196), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 52/173 (30%), Positives = 87/173 (50%), Gaps = 16/173 (9%)
Query: 2   SASRF--IKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNF-SANVVVNGSTVNLGL 58
           SAS+    K V +G+ AVGK+ L++ +    F      T+   F + +V ++ +TV   +
Sbjct: 2   SASKICQFKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAAFLTQSVCLDDTTVKFEI 61
Query: 59  WDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYA-PGVPIILVG 117
           WDTAGQE Y+ L P+ YRGA   I+ + + ++ ++   +K W+ EL+  A P + I L G
Sbjct: 62  WDTAGQERYHSLAPMYYRGAQAAIVVYDITNQETFAR-AKTWVKELQRQASPSIVIALAG 120
Query: 118 TKLDLRDDKQFFIDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQQNVKAVF 170
            K DL + +    +   A                +  ++E S+KT  NV  +F
Sbjct: 121 NKADLANKRMVEYEEAQAYADDN-----------SLLFMETSAKTAMNVNDLF 162

>pdb|1Z0F|A Chain A, Gdp-Bound Rab14 Gtpase Length = 179

Iteration: 1
 Score = 79.7 bits (195), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 51/176 (28%), Positives = 88/176 (50%), Gaps = 14/176 (7%)
Query: 4   SRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVV-VNGSTVNLGLWDTA 62
           S   K + +GD  VGK+CLL  +T   F  D   T+   F   ++ V+G  + L +WDTA
Sbjct: 13  SYIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTA 72
Query: 63  GQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYA-PGVPIILVGTKLD 121
           GQE +  +    YRGA   ++ + +  +++Y ++S  W+ + ++   P   IIL+G K D
Sbjct: 73  GQERFRAVTRSYYRGAAGALMVYDITRRSTYNHLS-SWLTDARNLTNPNTVIILIGNKAD 131
Query: 122 LRDDKQFFIDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQQNVKAVFDAAIRVV 177
           L  + Q  + +  A   +   G           ++E S+KT +NV+  F  A + +
Sbjct: 132 L--EAQRDVTYEEAKQFAEENG---------LLFLEASAKTGENVEDAFLEAAKKI 176

>pdb|3CWZ|A Chain A, Strucure Of Rab6(Gtp)-R6ip1 Complex Length = 188

Iteration: 1
 Score = 79.7 bits (195), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 54/168 (32%), Positives = 85/168 (50%), Gaps = 14/168 (8%)
Query: 5   RFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTV-FDNFSANVVVNGSTVNLGLWDTAG 63
           R  K V +G+ +VGKT L+  +  ++F   Y  T+  D  S  + +   TV L LWDTAG
Sbjct: 5   RKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAG 64
Query: 64  QEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELK-HYAPGVPIILVGTKLDL 122
            E +  L P   R + V ++ + + +  S++  + KWI +++      V I+LVG K DL
Sbjct: 65  LERFRSLIPSYIRDSTVAVVVYDITNVNSFQQTT-KWIDDVRTERGSDVIIMLVGNKTDL 123
Query: 123 RDDKQFFIDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQQNVKAVF 170
            D +Q          +S  +GE   K +    +IE S+K   NVK +F
Sbjct: 124 ADKRQ----------VSIEEGERKAKELNV-MFIETSAKAGYNVKQLF 160

>pdb|3MJH|A Chain A, Crystal Structure Of Human Rab5a In Complex With The C2h2 Zinc Finger Of Eea1 Length = 168

Iteration: 1
 Score = 79.7 bits (195), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 54/168 (32%), Positives = 86/168 (51%), Gaps = 16/168 (9%)
Query: 8   KCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNF-SANVVVNGSTVNLGLWDTAGQED 66
           K V +G+ AVGK+ L++ +    F      T+   F +  V ++ +TV   +WDTAG E 
Sbjct: 7   KLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGLER 66
Query: 67  YNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYA-PGVPIILVGTKLDLRDD 125
           Y+ L P+ YRGA   I+ + + ++ S+   +K W+ EL+  A P + I L G K DL + 
Sbjct: 67  YHSLAPMYYRGAQAAIVVYDITNEESFAR-AKNWVKELQRQASPNIVIALSGNKADLANK 125
Query: 126 KQFFIDHPGAVPISTAQG-EELRKLIGAPAYIECSSKTQQNVKAVFDA 172
           +        AV    AQ   +   L+    ++E S+KT  NV  +F A
Sbjct: 126 R--------AVDFQEAQSYADDNSLL----FMETSAKTSMNVNEIFMA 161

>pdb|1Z0A|A Chain A, Gdp-Bound Rab2a Gtpase Length = 174

Iteration: 1
 Score = 79.3 bits (194), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 46/167 (27%), Positives = 85/167 (50%), Gaps = 14/167 (8%)
Query: 6   FIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVV-VNGSTVNLGLWDTAGQ 64
             K + +GD  VGK+CLL+ +T   F   +  T+   F A ++ ++G  + L +WDTAGQ
Sbjct: 10  LFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDGKQIKLQIWDTAGQ 69
Query: 65  EDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELK-HYAPGVPIILVGTKLDLR 123
           E +  +    YRGA   +L + +  + ++ +++  W+ + + H    + I+L+G K DL 
Sbjct: 70  ESFRSITRSYYRGAAGALLVYDITRRDTFNHLT-TWLEDARQHSNSNMVIMLIGNKSDLE 128
Query: 124 DDKQFFIDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQQNVKAVF 170
             ++          +   +GE   +  G   ++E S+KT  NV+  F
Sbjct: 129 SRRE----------VKKEEGEAFAREHGL-IFMETSAKTASNVEEAF 164

>pdb|1Z06|A Chain A, Gppnhp-Bound Rab33 Gtpase Length = 189

Iteration: 1
 Score = 79.3 bits (194), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 44/126 (34%), Positives = 66/126 (52%), Gaps = 5/126 (3%)
Query: 2   SASRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVV-VNGSTVNLGLWD 60
           S SR  K + +GD  VGKTCL   + +  FP     T+  +F    V ++G  + + LWD
Sbjct: 16  SRSRIFKIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDIDGERIKIQLWD 75
Query: 61  TAGQEDYNR-LRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHY--APGVPIILVG 117
           TAGQE + + +    YR     +  + + + AS+ ++   WI E K +  A  +P ILVG
Sbjct: 76  TAGQERFRKSMVQHYYRNVHAVVFVYDMTNMASFHSLP-AWIEECKQHLLANDIPRILVG 134
Query: 118 TKLDLR 123
            K DLR
Sbjct: 135 NKCDLR 140

>pdb|2HUP|A Chain A, Crystal Structure Of Human Rab43 In Complex With Gdp Length = 201

Iteration: 1
 Score = 79.3 bits (194), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 50/167 (29%), Positives = 85/167 (50%), Gaps = 13/167 (7%)
Query: 6   FIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVV-VNGSTVNLGLWDTAGQ 64
             K V VGD +VGKTC++  + +  F      T+  +F+   + + G  V L +WDTAGQ
Sbjct: 29  LFKLVLVGDASVGKTCVVQRFKTGAFSERQGSTIGVDFTMKTLEIQGKRVKLQIWDTAGQ 88
Query: 65  EDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYA-PGVPIILVGTKLDLR 123
           E +  +    YR A+  ILA+ +  ++S+ +V   WI +++ YA   +  +L+G K DL 
Sbjct: 89  ERFRTITQSYYRSANGAILAYDITKRSSFLSVP-HWIEDVRKYAGSNIVQLLIGNKSDLS 147
Query: 124 DDKQFFIDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQQNVKAVF 170
           + ++          +S A+ + L +       IE S+K   NV+  F
Sbjct: 148 ELRE----------VSLAEAQSLAEHYDILCAIETSAKDSSNVEEAF 184

>pdb|3BBP|A Chain A, Rab6-Gtp:gcc185 Rab Binding Domain Complex Length = 211

Iteration: 1
 Score = 78.6 bits (192), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 54/168 (32%), Positives = 85/168 (50%), Gaps = 14/168 (8%)
Query: 5   RFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTV-FDNFSANVVVNGSTVNLGLWDTAG 63
           R  K V +G+ +VGKT L+  +  ++F   Y  T+  D  S  + +   TV L LWDTAG
Sbjct: 15  RKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAG 74
Query: 64  QEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELK-HYAPGVPIILVGTKLDL 122
            E +  L P   R + V ++ + + +  S++  + KWI +++      V I+LVG K DL
Sbjct: 75  LERFRSLIPSYIRDSTVAVVVYDITNVNSFQQTT-KWIDDVRTERGSDVIIMLVGNKTDL 133
Query: 123 RDDKQFFIDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQQNVKAVF 170
            D +Q          +S  +GE   K +    +IE S+K   NVK +F
Sbjct: 134 ADKRQ----------VSIEEGERKAKELNV-MFIETSAKAGYNVKQLF 170

>pdb|1X3S|A Chain A, Crystal Structure Of Human Rab18 In Complex With Gppnhp Length = 195

Iteration: 1
 Score = 78.2 bits (191), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 48/175 (27%), Positives = 90/175 (51%), Gaps = 16/175 (9%)
Query: 7   IKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVV-VNGSTVNLGLWDTAGQE 65
           +K + +G+  VGK+ LL+ +T +TF  +   T+  +F    + V+G+   L +WDTAGQE
Sbjct: 16  LKILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNKAKLAIWDTAGQE 75
Query: 66  DYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPII--LVGTKLDLR 123
            +  L P  YRGA   IL + +  + ++  +   W+ EL+ Y     I+  LVG K+D +
Sbjct: 76  RFRTLTPSYYRGAQGVILVYDVTRRDTFVKLD-NWLNELETYCTRNDIVNXLVGNKID-K 133
Query: 124 DDKQFFIDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQQNVKAVFDAAIRVVL 178
           ++++  +D    +  +            +  +IE S+KT   V+  F+  +  ++
Sbjct: 134 ENRE--VDRNEGLKFARKH---------SXLFIEASAKTCDGVQCAFEELVEKII 177

>pdb|1Z0D|A Chain A, Gdp-bound Rab5c Gtpase Length = 167

Iteration: 1
 Score = 77.8 bits (190), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 53/168 (31%), Positives = 84/168 (50%), Gaps = 16/168 (9%)
Query: 8   KCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNF-SANVVVNGSTVNLGLWDTAGQED 66
           K V +G+ AVGK+ L++ +    F      T+   F +  V ++ +TV   +WDTAG E 
Sbjct: 7   KLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAAFLTQTVCLDDTTVKFEIWDTAGLER 66
Query: 67  YNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYA-PGVPIILVGTKLDLRDD 125
           Y+ L P+ YRGA   I+ + + +  ++   +K W+ EL+  A P + I L G K DL   
Sbjct: 67  YHSLAPMYYRGAQAAIVVYDITNTDTFAR-AKNWVKELQRQASPNIVIALAGNKADLASK 125
Query: 126 KQFFIDHPGAVPISTAQG-EELRKLIGAPAYIECSSKTQQNVKAVFDA 172
           +        AV    AQ   +   L+    ++E S+KT  NV  +F A
Sbjct: 126 R--------AVEFQEAQAYADDNSLL----FMETSAKTAMNVNEIFMA 161

>pdb|3CPJ|B Chain B, Crystal Structure Of Ypt31 In Complex With Yeast Rab-Gdi Length = 223

Iteration: 1
 Score = 77.4 bits (189), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 54/176 (30%), Positives = 83/176 (47%), Gaps = 18/176 (10%)
Query: 6   FIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVV-VNGSTVNLGLWDTAGQ 64
             K V +GD  VGK+ LL  +T N F  D   T+   F+   + + G  +   +WDTAGQ
Sbjct: 13  LFKIVLIGDSGVGKSNLLSRFTKNEFNMDSKSTIGVEFATRTLEIEGKRIKAQIWDTAGQ 72
Query: 65  EDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYA-PGVPIILVGTKLDLR 123
           E Y  +    YRGA   ++ + +   +SYEN +  W+ EL+  A   V + L+G K DL 
Sbjct: 73  ERYRAITSAYYRGAVGALIVYDISKSSSYENCN-HWLSELRENADDNVAVGLIGNKSDLA 131
Query: 124 DDKQFFIDHPGAVPISTAQ--GEELRKLIGAPAYIECSSKTQQNVKAVFDAAIRVV 177
                   H  AVP   ++   +E + L     + E S+   +NV   F+  I  +
Sbjct: 132 --------HLRAVPTEESKTFAQENQLL-----FTETSALNSENVDKAFEELINTI 174

>pdb|3BFK|A Chain A, Crystal Structure Of Plasmodium Falciparum Rab11a In Complex With Gdp Length = 181

Iteration: 1
 Score = 77.0 bits (188), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 55/168 (32%), Positives = 84/168 (50%), Gaps = 15/168 (8%)
Query: 6   FIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVV--NGSTVNLGLWDTAG 63
             K V +GD  VGK+ LL  +T + F  +   T+   F+   +   N   +   +WDTAG
Sbjct: 7   LFKIVLIGDSGVGKSNLLSRFTRDEFNLESKSTIGVEFATKSIQLKNNKIIKAQIWDTAG 66
Query: 64  QEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYA-PGVPIILVGTKLDL 122
           QE Y  +    YRGA   +L + +  K S+EN+ +KW+ EL+  A   + I+LVG K DL
Sbjct: 67  QERYRAITSAYYRGAVGALLVYDITKKNSFENI-EKWLKELRDNADSNIVILLVGNKSDL 125
Query: 123 RDDKQFFIDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQQNVKAVF 170
           +  +   I+   A     A+ E+L       A+IE S+    NV+  F
Sbjct: 126 KHLR--VINDNDATQY--AKKEKL-------AFIETSALEATNVELAF 162

>pdb|4DRZ|A Chain A, Crystal Structure Of Human Rab14 Length = 196

Iteration: 1
 Score = 77.0 bits (188), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 50/176 (28%), Positives = 87/176 (49%), Gaps = 14/176 (7%)
Query: 4   SRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVV-VNGSTVNLGLWDTA 62
           S   K + +GD  VGK+CLL  +T   F  D   T+   F   ++ V+G  + L +WDTA
Sbjct: 28  SYIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTA 87
Query: 63  GQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYA-PGVPIILVGTKLD 121
           GQ  +  +    YRGA   ++ + +  +++Y ++S  W+ + ++   P   IIL+G K D
Sbjct: 88  GQGRFRAVTRSYYRGAAGALMVYDITRRSTYNHLS-SWLTDARNLTNPNTVIILIGNKAD 146
Query: 122 LRDDKQFFIDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQQNVKAVFDAAIRVV 177
           L  + Q  + +  A   +   G           ++E S+KT +NV+  F  A + +
Sbjct: 147 L--EAQRDVTYEEAKQFAEENG---------LLFLEASAKTGENVEDAFLEAAKKI 191

>pdb|2P5S|A Chain A, Rab Domain Of Human Rasef In Complex With Gdp Length = 199

Iteration: 1
 Score = 77.0 bits (188), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 58/178 (32%), Positives = 89/178 (50%), Gaps = 9/178 (5%)
Query: 2   SASRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSAN-VVVNGSTVNLGLWD 60
           S+ +  K V  GD AVGK+  L+    N F  +   T+  +F    ++V+G    L LWD
Sbjct: 24  SSQKAYKIVLAGDAAVGKSSFLMRLCKNEFRENISATLGVDFQMKTLIVDGERTVLQLWD 83
Query: 61  TAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYA-PGVPIILVGTK 119
           TAGQE +  +    +R AD  +L + +  + S+ N+ ++W+  ++  A   VPI+LVG K
Sbjct: 84  TAGQERFRSIAKSYFRKADGVLLLYDVTCEKSFLNI-REWVDMIEDAAHETVPIMLVGNK 142
Query: 120 LDLRDDKQFFIDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQQN-VKAVFDAAIRV 176
            D+RD         G   +    GE+L    GA  + E S+K   N V+AV   A  V
Sbjct: 143 ADIRDTAA----TEGQKCVPGHFGEKLAMTYGA-LFCETSAKDGSNIVEAVLHLAREV 195

>pdb|2G77|B Chain B, Crystal Structure Of Gyp1 Tbc Domain In Complex With Rab33 Gtpase Bound To Gdp And Alf3 Length = 198

Iteration: 1
 Score = 77.0 bits (188), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 43/124 (34%), Positives = 64/124 (51%), Gaps = 5/124 (4%)
Query: 4   SRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVV-VNGSTVNLGLWDTA 62
           SR  K + +GD  VGKTCL   + +  FP     T+  +F    V ++G  + + LWDTA
Sbjct: 27  SRIFKIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDIDGERIKIQLWDTA 86
Query: 63  GQEDYNR-LRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHY--APGVPIILVGTK 119
           GQE + + +    YR     +  +   + AS+ ++   WI E K +  A  +P ILVG K
Sbjct: 87  GQERFRKSMVQHYYRNVHAVVFVYDXTNXASFHSLP-AWIEECKQHLLANDIPRILVGNK 145
Query: 120 LDLR 123
            DLR
Sbjct: 146 CDLR 149

>pdb|4DKX|A Chain A, Crystal Structure Of The Rab 6a'(Q72l) Length = 216

Iteration: 1
 Score = 76.6 bits (187), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 52/168 (30%), Positives = 84/168 (50%), Gaps = 14/168 (8%)
Query: 5   RFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTV-FDNFSANVVVNGSTVNLGLWDTAG 63
           R  K V +G+ +VGKT L+  +  ++F   Y  T+  D  S  + +   T+ L LWDTAG
Sbjct: 12  RKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTIRLQLWDTAG 71
Query: 64  QEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELK-HYAPGVPIILVGTKLDL 122
            E +  L P   R +   ++ + + +  S++  + KWI +++      V I+LVG K DL
Sbjct: 72  LERFRSLIPSYIRDSAAAVVVYDITNVNSFQQTT-KWIDDVRTERGSDVIIMLVGNKTDL 130
Query: 123 RDDKQFFIDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQQNVKAVF 170
            D +Q          +S  +GE   K +    +IE S+K   NVK +F
Sbjct: 131 ADKRQ----------VSIEEGERKAKELNV-MFIETSAKAGYNVKQLF 167

>pdb|2ERX|A Chain A, Crystal Structure Of Diras2 In Complex With Gdp And Inorganic Phosphate Length = 172

Iteration: 1
 Score = 76.3 bits (186), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 47/161 (29%), Positives = 78/161 (48%), Gaps = 13/161 (8%)
Query: 13  GDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQEDYNRLRP 72
           G G VGK+ L++ +   TF   Y+PTV D +   +  + S   L + DT G   +  ++ 
Sbjct: 10  GAGGVGKSSLVLRFVKGTFRESYIPTVEDTYRQVISCDKSICTLQITDTTGSHQFPAMQR 69
Query: 73  LSYRGADVFILAFSLISKASYENVSK--KWIPELKHYAPGVPIILVGTKLDLRDDKQFFI 130
           LS      FIL +S+ S+ S E +    + I E+K     +PI+LVG K D    ++   
Sbjct: 70  LSISKGHAFILVYSITSRQSLEELKPIYEQICEIKGDVESIPIMLVGNKCDESPSRE--- 126
Query: 131 DHPGAVPISTAQGEELRKLIGAPAYIECSSKTQQNVKAVFD 171
                  + +++ E L +     A++E S+K   NVK +F 
Sbjct: 127 -------VQSSEAEALARTWKC-AFMETSAKLNHNVKELFQ 159

>pdb|2BMD|A Chain A, High Resolution Structure Of Gdp-Bound Human Rab4a Length = 186

Iteration: 1
 Score = 76.3 bits (186), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 53/176 (30%), Positives = 84/176 (47%), Gaps = 16/176 (9%)
Query: 6   FIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVV-VNGSTVNLGLWDTAGQ 64
             K + +G+   GK+CLL  +    F  D   T+   F + ++ V G  V L +WDTAGQ
Sbjct: 10  LFKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGQ 69
Query: 65  EDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYA-PGVPIILVGTKLDLR 123
           E +  +    YRGA   +L + + S+ +Y N    W+ + +  A   + IIL G K DL 
Sbjct: 70  ERFRSVTRSYYRGAAGALLVYDITSRETY-NALTNWLTDARMLASQNIVIILCGNKKDLD 128
Query: 124 DDKQF-FIDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQQNVKAVFDAAIRVVL 178
            D++  F++         AQ  EL        ++E S+ T +NV+  F    R +L
Sbjct: 129 ADREVTFLEAS-----RFAQENEL-------MFLETSALTGENVEEAFVQCARKIL 172

>pdb|3TSO|A Chain A, Structure Of The Cancer Associated Rab25 Protein In Complex With Fip2 Length = 178

Iteration: 1
 Score = 75.9 bits (185), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 55/175 (31%), Positives = 81/175 (46%), Gaps = 18/175 (10%)
Query: 8   KCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGST-VNLGLWDTAGQED 66
           K V +G+  VGKT LL  +T N F  D   T+   FS   V+ G+  V   +WDTAG E 
Sbjct: 12  KVVLIGESGVGKTNLLSRFTRNEFSHDSRTTIGVEFSTRTVMLGTAAVKAQIWDTAGLER 71
Query: 67  YNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPEL-KHYAPGVPIILVGTKLDLRDD 125
           Y  +    YRGA   +L F L    +Y  V ++W+ EL  H    + ++LVG K DL   
Sbjct: 72  YRAITSAYYRGAVGALLVFDLTKHQTYA-VVERWLKELYDHAEATIVVMLVGNKSDLSQA 130
Query: 126 KQFFIDHPGAVPISTAQGEELRKLI--GAPAYIECSSKTQQNVKAVFDAAIRVVL 178
           ++        VP      EE R         ++E S+    NV+  F+  ++ + 
Sbjct: 131 RE--------VPT-----EEARMFAENNGLLFLETSALDSTNVELAFETVLKEIF 172

>pdb|2BKU|A Chain A, Kap95p:rangtp Complex Length = 177

Iteration: 1
 Score = 75.9 bits (185), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 43/121 (35%), Positives = 61/121 (50%), Gaps = 2/121 (1%)
Query: 7   IKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVV-VNGSTVNLGLWDTAGQE 65
            K V VGDG  GKT  +  + +  F   YVPT+       V   N   +   +WDTAGQE
Sbjct: 11  FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVPTLGVEVHPLVFHTNRGPIKFNVWDTAGQE 70
Query: 66  DYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLRDD 125
            +  LR   Y  A   I+ F + S+ +Y+NV   W  +L      +PI+L G K+D++D 
Sbjct: 71  KFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVP-NWHRDLVRVCENIPIVLCGNKVDIKDR 129
Query: 126 K 126
           K
Sbjct: 130 K 130

>pdb|2FN4|A Chain A, The Crystal Structure Of Human Ras-Related Protein, Rras, In The Gdp- Bound State Length = 181

Iteration: 1
 Score = 75.5 bits (184), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 51/163 (31%), Positives = 78/163 (47%), Gaps = 18/163 (11%)
Query: 19  KTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGA 78
           K+ L I +  + F +DY PT+ D+++    V+G    L + DTAGQE++  +R    R  
Sbjct: 22  KSALTIQFIQSYFVSDYDPTIEDSYTKICSVDGIPARLDILDTAGQEEFGAMREQYMRAG 81
Query: 79  DVFILAFSLISKASYENVSKKWIPELK-HYAPGVPIILVGTKLDLRDDKQFFIDHPGAVP 137
             F+L F++  + S+  V K +   L+       P++LVG K DL   +Q        VP
Sbjct: 82  HGFLLVFAINDRQSFNEVGKLFTQILRVKDRDDFPVVLVGNKADLESQRQ--------VP 133
Query: 138 ISTAQGEELRKLIGAP---AYIECSSKTQQNVKAVFDAAIRVV 177
            S A         GA    AY E S+K + NV   F+  +R V
Sbjct: 134 RSEASA------FGASHHVAYFEASAKLRLNVDEAFEQLVRAV 170

>pdb|2OIL|A Chain A, Crystal Structure Of Human Rab25 In Complex With Gdp Length = 193

Iteration: 1
 Score = 75.5 bits (184), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 55/175 (31%), Positives = 81/175 (46%), Gaps = 18/175 (10%)
Query: 8   KCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGST-VNLGLWDTAGQED 66
           K V +G+  VGKT LL  +T N F  D   T+   FS   V+ G+  V   +WDTAG E 
Sbjct: 27  KVVLIGESGVGKTNLLSRFTRNEFSHDSRTTIGVEFSTRTVMLGTAAVKAQIWDTAGLER 86
Query: 67  YNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPEL-KHYAPGVPIILVGTKLDLRDD 125
           Y  +    YRGA   +L F L    +Y  V ++W+ EL  H    + ++LVG K DL   
Sbjct: 87  YRAITSAYYRGAVGALLVFDLTKHQTYA-VVERWLKELYDHAEATIVVMLVGNKSDLSQA 145
Query: 126 KQFFIDHPGAVPISTAQGEELRKLI--GAPAYIECSSKTQQNVKAVFDAAIRVVL 178
           ++        VP      EE R         ++E S+    NV+  F+  ++ + 
Sbjct: 146 RE--------VPT-----EEARMFAENNGLLFLETSALDSTNVELAFETVLKEIF 187

>pdb|1BYU|A Chain A, Canine Gdp-Ran Length = 216

Iteration: 1
 Score = 75.5 bits (184), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 43/121 (35%), Positives = 61/121 (50%), Gaps = 2/121 (1%)
Query: 7   IKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVV-VNGSTVNLGLWDTAGQE 65
            K V VGDG  GKT  +  + +  F   YVPT+       V   N   +   +WDTAGQE
Sbjct: 11  FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVPTLGVEVHPLVFHTNRGPIKFNVWDTAGQE 70
Query: 66  DYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLRDD 125
            +  LR   Y  A   I+ F + S+ +Y+NV   W  +L      +PI+L G K+D++D 
Sbjct: 71  KFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVP-NWHRDLVRVCENIPIVLCGNKVDIKDR 129
Query: 126 K 126
           K
Sbjct: 130 K 130

>pdb|1D5C|A Chain A, Crystal Structure Of Plasmodium Falciparum Rab6 Complexed With Gdp Length = 162

Iteration: 1
 Score = 74.7 bits (182), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 51/165 (30%), Positives = 83/165 (50%), Gaps = 14/165 (8%)
Query: 8   KCVTVGDGAVGKTCLLISYTSNTFPTDYVPTV-FDNFSANVVVNGSTVNLGLWDTAGQED 66
           K V +G+ AVGKT ++  +  +TF  +Y  T+  D  S  + ++   V L LWDTAGQE 
Sbjct: 3   KLVFLGEQAVGKTSIITRFXYDTFDNNYQSTIGIDFLSKTLYLDEGPVRLQLWDTAGQER 62
Query: 67  YNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPE-LKHYAPGVPIILVGTKLDLRDD 125
           +  L P   R +   I+ + + ++ S+EN + KWI + L      V I LVG K DL D 
Sbjct: 63  FRSLIPSYIRDSAAAIVVYDITNRQSFENTT-KWIQDILNERGKDVIIALVGNKTDLGDL 121
Query: 126 KQFFIDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQQNVKAVF 170
           ++          ++  +G +  +      + E S+K   N+K +F
Sbjct: 122 RK----------VTYEEGXQKAQEYNT-XFHETSAKAGHNIKVLF 155

>pdb|1YU9|A Chain A, Gppnhp-Bound Rab4a Length = 175

Iteration: 1
 Score = 73.9 bits (180), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 52/176 (29%), Positives = 84/176 (47%), Gaps = 16/176 (9%)
Query: 6   FIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVV-VNGSTVNLGLWDTAGQ 64
             K + +G+   GK+CLL  +    F  D   T+   F + ++ V G  V L +WDTAGQ
Sbjct: 11  LFKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGQ 70
Query: 65  EDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYA-PGVPIILVGTKLDLR 123
           E +  +    YRGA   +L + + S+ +Y N    W+ + +  A   + IIL G K DL 
Sbjct: 71  ERFRSVTRSYYRGAAGALLVYDITSRETY-NALTNWLTDARMLASQNIVIILCGNKKDLD 129
Query: 124 DDKQF-FIDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQQNVKAVFDAAIRVVL 178
            D++  F++         AQ  EL        ++E S+ T ++V+  F    R +L
Sbjct: 130 ADREVTFLEAS-----RFAQENEL-------MFLETSALTGEDVEEAFVQCARKIL 173

>pdb|1QG4|A Chain A, Canine Gdp-Ran F72y Mutant Length = 216

Iteration: 1
 Score = 73.6 bits (179), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 43/121 (35%), Positives = 60/121 (49%), Gaps = 2/121 (1%)
Query: 7   IKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVV-VNGSTVNLGLWDTAGQE 65
            K V VGDG  GKT  +  + +  F   YV T+       V   N   +   +WDTAGQE
Sbjct: 11  FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQE 70
Query: 66  DYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLRDD 125
            Y  LR   Y  A   I+ F + S+ +Y+NV   W  +L      +PI+L G K+D++D 
Sbjct: 71  KYGGLRDGYYIQAQCAIIMFDVTSRVTYKNVP-NWHRDLVRVCENIPIVLCGNKVDIKDR 129
Query: 126 K 126
           K
Sbjct: 130 K 130

>pdb|2ATV|A Chain A, The Crystal Structure Of Human Rerg In The Gdp Bound State Length = 196

Iteration: 1
 Score = 73.6 bits (179), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 54/180 (30%), Positives = 89/180 (49%), Gaps = 16/180 (8%)
Query: 1   MSASRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWD 60
           M+ S  +K    G   VGK+ L++ + +  F  +Y PT+   +     ++   V++ + D
Sbjct: 23  MAKSAEVKLAIFGRAGVGKSALVVRFLTKRFIWEYDPTLESTYRHQATIDDEVVSMEILD 82
Query: 61  TAGQEDYNRLRPLSYRGADVFILAFSLISKASYENV--SKKWIPELKHYAPGVPIILVGT 118
           TAGQED  + R    R  + F+L + +  + S+E V   K  + E+K     V +ILVG 
Sbjct: 83  TAGQEDTIQ-REGHMRWGEGFVLVYDITDRGSFEEVLPLKNILDEIKK-PKNVTLILVGN 140
Query: 119 KLDLRDDKQFFIDHPGAVPISTAQGEELRKLIGAPAYIECSSKT-QQNVKAVFDAAIRVV 177
           K DL   +Q          +ST +GE+L   + A A+ ECS+ T + N+  +F    R V
Sbjct: 141 KADLDHSRQ----------VSTEEGEKLATEL-ACAFYECSACTGEGNITEIFYELCREV 189

>pdb|1WA5|A Chain A, Crystal Structure Of The Exportin Cse1p Complexed With Its Cargo (Kap60p) And Rangtp Length = 176

Iteration: 1
 Score = 72.8 bits (177), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 42/121 (34%), Positives = 60/121 (49%), Gaps = 2/121 (1%)
Query: 7   IKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVV-VNGSTVNLGLWDTAGQE 65
            K V VGDG  GKT  +  + +  F   YV T+       V   N   +   +WDTAGQE
Sbjct: 11  FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQE 70
Query: 66  DYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLRDD 125
            +  LR   Y  A   I+ F + S+ +Y+NV   W  +L      +PI+L G K+D++D 
Sbjct: 71  KFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVP-NWHRDLVRVCENIPIVLCGNKVDIKDR 129
Query: 126 K 126
           K
Sbjct: 130 K 130

>pdb|1RRP|A Chain A, Structure Of The Ran-Gppnhp-Ranbd1 Complex Length = 204

Iteration: 1
 Score = 72.4 bits (176), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 42/121 (34%), Positives = 60/121 (49%), Gaps = 2/121 (1%)
Query: 7   IKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVV-VNGSTVNLGLWDTAGQE 65
            K V VGDG  GKT  +  + +  F   YV T+       V   N   +   +WDTAGQE
Sbjct: 4   FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQE 63
Query: 66  DYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLRDD 125
            +  LR   Y  A   I+ F + S+ +Y+NV   W  +L      +PI+L G K+D++D 
Sbjct: 64  KFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVP-NWHRDLVRVCENIPIVLCGNKVDIKDR 122
Query: 126 K 126
           K
Sbjct: 123 K 123

>pdb|3EA5|A Chain A, Kap95p Binding Induces The Switch Loops Of Rangdp To Adopt The Gtp- Bound Conformation: Implications For Nuclear Import Complex Assembly Dynamics Length = 216

Iteration: 1
 Score = 72.4 bits (176), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 42/121 (34%), Positives = 60/121 (49%), Gaps = 2/121 (1%)
Query: 7   IKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVV-VNGSTVNLGLWDTAGQE 65
            K V VGDG  GKT  +  + +  F   YV T+       V   N   +   +WDTAGQE
Sbjct: 11  FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQE 70
Query: 66  DYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLRDD 125
            +  LR   Y  A   I+ F + S+ +Y+NV   W  +L      +PI+L G K+D++D 
Sbjct: 71  KFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVP-NWHRDLVRVCENIPIVLCGNKVDIKDR 129
Query: 126 K 126
           K
Sbjct: 130 K 130

>pdb|1A2K|C Chain C, Gdpran-Ntf2 Complex Length = 216

Iteration: 1
 Score = 72.4 bits (176), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 42/121 (34%), Positives = 60/121 (49%), Gaps = 2/121 (1%)
Query: 7   IKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVV-VNGSTVNLGLWDTAGQE 65
            K V VGDG  GKT  +  + +  F   YV T+       V   N   +   +WDTAGQE
Sbjct: 11  FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQE 70
Query: 66  DYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLRDD 125
            +  LR   Y  A   I+ F + S+ +Y+NV   W  +L      +PI+L G K+D++D 
Sbjct: 71  KFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVP-NWHRDLVRVCENIPIVLCGNKVDIKDR 129
Query: 126 K 126
           K
Sbjct: 130 K 130

>pdb|3GJ0|A Chain A, Crystal Structure Of Human Rangdp Length = 221

Iteration: 1
 Score = 72.4 bits (176), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 42/121 (34%), Positives = 60/121 (49%), Gaps = 2/121 (1%)
Query: 7   IKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVV-VNGSTVNLGLWDTAGQE 65
            K V VGDG  GKT  +  + +  F   YV T+       V   N   +   +WDTAGQE
Sbjct: 16  FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQE 75
Query: 66  DYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLRDD 125
            +  LR   Y  A   I+ F + S+ +Y+NV   W  +L      +PI+L G K+D++D 
Sbjct: 76  KFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVP-NWHRDLVRVCENIPIVLCGNKVDIKDR 134
Query: 126 K 126
           K
Sbjct: 135 K 135

>pdb|1QBK|C Chain C, Structure Of The Karyopherin Beta2-ran Gppnhp Nuclear Transport Complex Length = 216

Iteration: 1
 Score = 72.4 bits (176), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 42/121 (34%), Positives = 60/121 (49%), Gaps = 2/121 (1%)
Query: 7   IKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVV-VNGSTVNLGLWDTAGQE 65
            K V VGDG  GKT  +  + +  F   YV T+       V   N   +   +WDTAGQE
Sbjct: 11  FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQE 70
Query: 66  DYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLRDD 125
            +  LR   Y  A   I+ F + S+ +Y+NV   W  +L      +PI+L G K+D++D 
Sbjct: 71  KFGGLRDGYYIQAQCAIIXFDVTSRVTYKNVP-NWHRDLVRVCENIPIVLCGNKVDIKDR 129
Query: 126 K 126
           K
Sbjct: 130 K 130

>pdb|1VG1|A Chain A, Gdp-bound Rab7 Length = 185

Iteration: 1
 Score = 72.0 bits (175), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 50/179 (27%), Positives = 83/179 (46%), Gaps = 18/179 (10%)
Query: 6   FIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNF-SANVVVNGSTVNLGLWDTAGQ 64
            +K + +GD  VGKT L+  Y +  F   Y  T+  +F +  V+V+   V + +WDTAGQ
Sbjct: 8   LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQ 67
Query: 65  EDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPE-LKHYAP----GVPIILVGTK 119
           E +  L    YRGAD  +L F + +  +++ +   W  E L   +P      P +++G K
Sbjct: 68  ERFQSLGVAFYRGADCCVLVFDVTAPNTFKTLD-SWRDEFLIQASPRDPENFPFVVLGNK 126
Query: 120 LDLRDDKQFFIDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQQNVKAVFDAAIRVVL 178
           +DL + +           ++T + +          Y E S+K   NV+  F    R  L
Sbjct: 127 IDLENRQ-----------VATKRAQAWCYSKNNIPYFETSAKEAINVEQAFQTIARNAL 174

>pdb|1VG0|B Chain B, The Crystal Structures Of The Rep-1 Protein In Complex With Monoprenylated Rab7 Protein Length = 207

Iteration: 1
 Score = 72.0 bits (175), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 50/179 (27%), Positives = 83/179 (46%), Gaps = 18/179 (10%)
Query: 6   FIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNF-SANVVVNGSTVNLGLWDTAGQ 64
            +K + +GD  VGKT L+  Y +  F   Y  T+  +F +  V+V+   V + +WDTAGQ
Sbjct: 8   LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQ 67
Query: 65  EDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPE-LKHYAP----GVPIILVGTK 119
           E +  L    YRGAD  +L F + +  +++ +   W  E L   +P      P +++G K
Sbjct: 68  ERFQSLGVAFYRGADCCVLVFDVTAPNTFKTLD-SWRDEFLIQASPRDPENFPFVVLGNK 126
Query: 120 LDLRDDKQFFIDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQQNVKAVFDAAIRVVL 178
           +DL + +           ++T + +          Y E S+K   NV+  F    R  L
Sbjct: 127 IDLENRQ-----------VATKRAQAWCYSKNNIPYFETSAKEAINVEQAFQTIARNAL 174

>pdb|1Z0K|A Chain A, Structure Of Gtp-Bound Rab4q67l Gtpase In Complex With The Central Rab Binding Domain Of Rabenosyn-5 Length = 172

Iteration: 1
 Score = 71.2 bits (173), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 51/176 (28%), Positives = 83/176 (47%), Gaps = 16/176 (9%)
Query: 6   FIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVV-VNGSTVNLGLWDTAGQ 64
             K + +G+   GK+CLL  +    F  D   T+   F + ++ V G  V L +WDTAG 
Sbjct: 8   LFKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGL 67
Query: 65  EDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYA-PGVPIILVGTKLDLR 123
           E +  +    YRGA   +L + + S+ +Y N    W+ + +  A   + IIL G K DL 
Sbjct: 68  ERFRSVTRSYYRGAAGALLVYDITSRETY-NALTNWLTDARMLASQNIVIILCGNKKDLD 126
Query: 124 DDKQF-FIDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQQNVKAVFDAAIRVVL 178
            D++  F++         AQ  EL        ++E S+ T ++V+  F    R +L
Sbjct: 127 ADREVTFLEAS-----RFAQENEL-------MFLETSALTGEDVEEAFVQCARKIL 170

>pdb|3LAW|A Chain A, Structure Of Gtp-Bound L129f Mutant Rab7 Length = 207

Iteration: 1
 Score = 70.9 bits (172), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 49/179 (27%), Positives = 82/179 (45%), Gaps = 18/179 (10%)
Query: 6   FIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNF-SANVVVNGSTVNLGLWDTAGQ 64
            +K + +GD  VGKT L+  Y +  F   Y  T+  +F +  V+V+   V + +WDTAGQ
Sbjct: 8   LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQ 67
Query: 65  EDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPE-LKHYAP----GVPIILVGTK 119
           E +  L    YRGAD  +L F + +  +++ +   W  E L   +P      P +++G K
Sbjct: 68  ERFQSLGVAFYRGADCCVLVFDVTAPNTFKTLD-SWRDEFLIQASPRDPENFPFVVLGNK 126
Query: 120 LDLRDDKQFFIDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQQNVKAVFDAAIRVVL 178
           +D  + +           ++T + +          Y E S+K   NV+  F    R  L
Sbjct: 127 IDFENRQ-----------VATKRAQAWCYSKNNIPYFETSAKEAINVEQAFQTIARNAL 174

>pdb|3KKP|A Chain A, Crystal Structure Of M-Ras P40d In Complex With Gppnhp Length = 183

Iteration: 1
 Score = 70.9 bits (172), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 49/162 (30%), Positives = 82/162 (50%), Gaps = 15/162 (9%)
Query: 19  KTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGA 78
           K+ L I +    F  DY PT+ D++  +  ++     L + DTAGQE+++ +R    R  
Sbjct: 31  KSALTIQFFQKIFVDDYDPTIEDSYLKHTEIDNQWAILDVLDTAGQEEFSAMREQYMRTG 90
Query: 79  DVFILAFSLISKASYENVSK--KWIPELKHYAPGVPIILVGTKLDLRDDKQFFIDHPGAV 136
           D F++ +S+  KAS+E+V +  + I  +K      P+ILV  K+DL   ++         
Sbjct: 91  DGFLIVYSVTDKASFEHVDRFHQLILRVKD-RESFPMILVANKVDLMHLRK--------- 140
Query: 137 PISTAQGEELRKLIGAPAYIECSSKTQQ-NVKAVFDAAIRVV 177
            ++  QG+E+      P YIE S+K    NV   F   +RV+
Sbjct: 141 -VTRDQGKEMATKYNIP-YIETSAKDPPLNVDKTFHDLVRVI 180

>pdb|1X1R|A Chain A, Crystal Structure Of M-Ras In Complex With Gdp Length = 178

Iteration: 1
 Score = 70.5 bits (171), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 49/162 (30%), Positives = 82/162 (50%), Gaps = 15/162 (9%)
Query: 19  KTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGA 78
           K+ L I +    F  DY PT+ D++  +  ++     L + DTAGQE+++ +R    R  
Sbjct: 26  KSALTIQFFQKIFVPDYDPTIEDSYLKHTEIDNQWAILDVLDTAGQEEFSAMREQYMRTG 85
Query: 79  DVFILAFSLISKASYENVSK--KWIPELKHYAPGVPIILVGTKLDLRDDKQFFIDHPGAV 136
           D F++ +S+  KAS+E+V +  + I  +K      P+ILV  K+DL   ++         
Sbjct: 86  DGFLIVYSVTDKASFEHVDRFHQLILRVKD-RESFPMILVANKVDLMHLRK--------- 135
Query: 137 PISTAQGEELRKLIGAPAYIECSSKTQQ-NVKAVFDAAIRVV 177
            ++  QG+E+      P YIE S+K    NV   F   +RV+
Sbjct: 136 -VTRDQGKEMATKYNIP-YIETSAKDPPLNVDKTFHDLVRVI 175

>pdb|3OES|A Chain A, Crystal Structure Of The Small Gtpase Rhebl1 Length = 201

Iteration: 1
 Score = 70.5 bits (171), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 51/179 (28%), Positives = 88/179 (49%), Gaps = 14/179 (7%)
Query: 1   MSASRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWD 60
           M   R+ K V +G   VGKT L   +    F   Y PTV + +S  V +     +L L D
Sbjct: 19  MPLVRYRKVVILGYRCVGKTSLAHQFVEGEFSEGYDPTVENTYSKIVTLGKDEFHLHLVD 78
Query: 61  TAGQEDYNRLRPLSY-RGADVFILAFSLISKASYENVSKKWIP-ELKHYAPGVPIILVGT 118
           TAGQ++Y+ L P S+  G   ++L +S+ S  S++ +   +      H    VP++LVG 
Sbjct: 79  TAGQDEYSIL-PYSFIIGVHGYVLVYSVTSLHSFQVIESLYQKLHEGHGKTRVPVVLVGN 137
Query: 119 KLDLRDDKQFFIDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQQNVKAVFDAAIRVV 177
           K DL  +++          +   +G++L +  GA  ++E S++  Q  + +F   I+ +
Sbjct: 138 KADLSPERE----------VQAVEGKKLAESWGA-TFMESSARENQLTQGIFTKVIQEI 185

>pdb|1QG2|A Chain A, Canine Gdp-Ran R76e Mutant Length = 216

Iteration: 1
 Score = 70.1 bits (170), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 41/121 (33%), Positives = 59/121 (48%), Gaps = 2/121 (1%)
Query: 7   IKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVV-VNGSTVNLGLWDTAGQE 65
            K V VGDG  GKT  +  + +  F   YV T+       V   N   +   +WDTAGQE
Sbjct: 11  FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQE 70
Query: 66  DYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLRDD 125
            +  L    Y  A   I+ F + S+ +Y+NV   W  +L      +PI+L G K+D++D 
Sbjct: 71  KFGGLEDGYYIQAQCAIIMFDVTSRVTYKNVP-NWHRDLVRVCENIPIVLCGNKVDIKDR 129
Query: 126 K 126
           K
Sbjct: 130 K 130

>pdb|3KKO|A Chain A, Crystal Structure Of M-Ras P40dD41EL51R IN COMPLEX WITH GP Length = 183

Iteration: 1
 Score = 69.7 bits (169), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 48/162 (29%), Positives = 82/162 (50%), Gaps = 15/162 (9%)
Query: 19  KTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGA 78
           K+ L I +    F  +Y PT+ D++  +  ++     L + DTAGQE+++ +R    R  
Sbjct: 31  KSALTIQFFQKIFVDEYDPTIEDSYRKHTEIDNQWAILDVLDTAGQEEFSAMREQYMRTG 90
Query: 79  DVFILAFSLISKASYENVSK--KWIPELKHYAPGVPIILVGTKLDLRDDKQFFIDHPGAV 136
           D F++ +S+  KAS+E+V +  + I  +K      P+ILV  K+DL   ++         
Sbjct: 91  DGFLIVYSVTDKASFEHVDRFHQLILRVKD-RESFPMILVANKVDLMHLRK--------- 140
Query: 137 PISTAQGEELRKLIGAPAYIECSSKTQQ-NVKAVFDAAIRVV 177
            ++  QG+E+      P YIE S+K    NV   F   +RV+
Sbjct: 141 -VTRDQGKEMATKYNIP-YIETSAKDPPLNVDKTFHDLVRVI 180

>pdb|1YVD|A Chain A, Gppnhp-Bound Rab22 Gtpase Length = 169

Iteration: 1
 Score = 69.7 bits (169), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 37/125 (29%), Positives = 68/125 (54%), Gaps = 3/125 (2%)
Query: 5   RFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGL-WDTAG 63
           R +K   +GD  VGK+ ++  +  ++F  +  PT+  +F    V   + ++  L WDTAG
Sbjct: 4   RELKVCLLGDTGVGKSSIVWRFVEDSFDPNINPTIGASFMTKTVQYQNELHKFLIWDTAG 63
Query: 64  QEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELK-HYAPGVPIILVGTKLDL 122
           QE +  L P+ YRG+   I+ + +  + ++  + K W+ EL+ H  P + + + G K DL
Sbjct: 64  QERFRALAPMYYRGSAAAIIVYDITKEETFSTL-KNWVRELRQHGPPSIVVAIAGNKCDL 122
Query: 123 RDDKQ 127
            D ++
Sbjct: 123 TDVRE 127

>pdb|3RWM|B Chain B, Crystal Structure Of Ypt32 In Complex With Gppnhp Length = 185

Iteration: 1
 Score = 69.3 bits (168), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 49/167 (29%), Positives = 76/167 (45%), Gaps = 14/167 (8%)
Query: 6   FIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVV-VNGSTVNLGLWDTAGQ 64
             K V +GD  VGK+ LL  +T++ F  +   T+   F+   + V    +   +WDTAG 
Sbjct: 10  LFKIVLIGDSGVGKSNLLSRFTTDEFNIESKSTIGVEFATRTIEVENKKIKAQIWDTAGL 69
Query: 65  EDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYA-PGVPIILVGTKLDLR 123
           E Y  +    YRGA   ++ + +   +SYEN +  W+ EL+  A   V + L+G K DL 
Sbjct: 70  ERYRAITSAYYRGAVGALIVYDISKSSSYENCN-HWLTELRENADDNVAVGLIGNKSDLA 128
Query: 124 DDKQFFIDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQQNVKAVF 170
                   H  AVP   A+   +   +    + E S+    NV   F
Sbjct: 129 --------HLRAVPTDEAKNFAMENQM---LFTETSALNSDNVDKAF 164

>pdb|3NC1|C Chain C, Crystal Structure Of The Crm1-Rangtp Complex Length = 182

Iteration: 1
 Score = 69.3 bits (168), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 41/121 (33%), Positives = 59/121 (48%), Gaps = 2/121 (1%)
Query: 7   IKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVV-VNGSTVNLGLWDTAGQE 65
            K V VGDG  GKT  +  + +  F   YV T+       V   N   +   +WDTAG E
Sbjct: 13  FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGLE 72
Query: 66  DYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLRDD 125
            +  LR   Y  A   I+ F + S+ +Y+NV   W  +L      +PI+L G K+D++D 
Sbjct: 73  KFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVP-NWHRDLVRVCENIPIVLCGNKVDIKDR 131
Query: 126 K 126
           K
Sbjct: 132 K 132

>pdb|3NBY|C Chain C, Crystal Structure Of The Pki Nes-Crm1-Rangtp Nuclear Export Complex Length = 176

Iteration: 1
 Score = 69.3 bits (168), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 41/121 (33%), Positives = 59/121 (48%), Gaps = 2/121 (1%)
Query: 7   IKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVV-VNGSTVNLGLWDTAGQE 65
            K V VGDG  GKT  +  + +  F   YV T+       V   N   +   +WDTAG E
Sbjct: 7   FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGLE 66
Query: 66  DYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLRDD 125
            +  LR   Y  A   I+ F + S+ +Y+NV   W  +L      +PI+L G K+D++D 
Sbjct: 67  KFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVP-NWHRDLVRVCENIPIVLCGNKVDIKDR 125
Query: 126 K 126
           K
Sbjct: 126 K 126

>pdb|1Z0J|A Chain A, Structure Of Gtp-Bound Rab22q64l Gtpase In Complex With The Minimal Rab Binding Domain Of Rabenosyn-5 Length = 170

Iteration: 1
 Score = 69.3 bits (168), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 38/128 (29%), Positives = 69/128 (53%), Gaps = 3/128 (2%)
Query: 2   SASRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGL-WD 60
           SA R +K   +GD  VGK+ ++  +  ++F  +  PT+  +F    V   + ++  L WD
Sbjct: 2   SALRELKVCLLGDTGVGKSSIMWRFVEDSFDPNINPTIGASFMTKTVQYQNELHKFLIWD 61
Query: 61  TAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELK-HYAPGVPIILVGTK 119
           TAG E +  L P+ YRG+   I+ + +  + ++  + K W+ EL+ H  P + + + G K
Sbjct: 62  TAGLERFRALAPMYYRGSAAAIIVYDITKEETFSTL-KNWVRELRQHGPPSIVVAIAGNK 120
Query: 120 LDLRDDKQ 127
            DL D ++
Sbjct: 121 CDLTDVRE 128

>pdb|3RAN|A Chain A, Canine Gdp-Ran Q69l Mutant Length = 216

Iteration: 1
 Score = 68.9 bits (167), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 41/121 (33%), Positives = 59/121 (48%), Gaps = 2/121 (1%)
Query: 7   IKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVV-VNGSTVNLGLWDTAGQE 65
            K V VGDG  GKT  +  + +  F   YV T+       V   N   +   +WDTAG E
Sbjct: 11  FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGLE 70
Query: 66  DYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLRDD 125
            +  LR   Y  A   I+ F + S+ +Y+NV   W  +L      +PI+L G K+D++D 
Sbjct: 71  KFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVP-NWHRDLVRVCENIPIVLCGNKVDIKDR 129
Query: 126 K 126
           K
Sbjct: 130 K 130

>pdb|3RAP|R Chain R, The Small G Protein Rap2 In A Non Catalytic Complex With Gtp Length = 167

Iteration: 1
 Score = 68.9 bits (167), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 47/159 (29%), Positives = 83/159 (52%), Gaps = 14/159 (8%)
Query: 19  KTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGA 78
           K+ L + + + TF   Y PT+ D +   + V+ S   L + DTAG E +  +R L  +  
Sbjct: 16  KSALTVQFVTGTFIEKYDPTIEDFYRKEIEVDSSPSVLEILDTAGTEQFASMRDLYIKNG 75
Query: 79  DVFILAFSLISKASYENVS--KKWIPELKHYAPGVPIILVGTKLDLRDDKQFFIDHPGAV 136
             FIL +SL+++ S++++   +  I  +K Y   VP+ILVG K+DL              
Sbjct: 76  QGFILVYSLVNQQSFQDIKPMRDQIIRVKRYEK-VPVILVGNKVDL----------ESER 124
Query: 137 PISTAQGEELRKLIGAPAYIECSSKTQQNVKAVFDAAIR 175
            +S+++G  L +  G P ++E S+K++  V  +F   +R
Sbjct: 125 EVSSSEGRALAEEWGCP-FMETSAKSKTMVDELFAEIVR 162

>pdb|1T91|A Chain A, Crystal Structure Of Human Small Gtpase Rab7(Gtp) Length = 207

Iteration: 1
 Score = 68.9 bits (167), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 49/179 (27%), Positives = 82/179 (45%), Gaps = 18/179 (10%)
Query: 6   FIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNF-SANVVVNGSTVNLGLWDTAGQ 64
            +K + +GD  VGKT L+  Y +  F   Y  T+  +F +  V+V+   V + +WDTAG 
Sbjct: 8   LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGL 67
Query: 65  EDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPE-LKHYAP----GVPIILVGTK 119
           E +  L    YRGAD  +L F + +  +++ +   W  E L   +P      P +++G K
Sbjct: 68  ERFQSLGVAFYRGADCCVLVFDVTAPNTFKTLD-SWRDEFLIQASPRDPENFPFVVLGNK 126
Query: 120 LDLRDDKQFFIDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQQNVKAVFDAAIRVVL 178
           +DL + +           ++T + +          Y E S+K   NV+  F    R  L
Sbjct: 127 IDLENRQ-----------VATKRAQAWCYSKNNIPYFETSAKEAINVEQAFQTIARNAL 174

>pdb|3PIR|A Chain A, Crystal Structure Of M-Rasd41e In Complex With Gppnhp (Type 1) Length = 183

Iteration: 1
 Score = 68.9 bits (167), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 48/162 (29%), Positives = 82/162 (50%), Gaps = 15/162 (9%)
Query: 19  KTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGA 78
           K+ L I +    F  +Y PT+ D++  +  ++     L + DTAGQE+++ +R    R  
Sbjct: 31  KSALTIQFFQKIFVPEYDPTIEDSYLKHTEIDNQWAILDVLDTAGQEEFSAMREQYMRTG 90
Query: 79  DVFILAFSLISKASYENVSK--KWIPELKHYAPGVPIILVGTKLDLRDDKQFFIDHPGAV 136
           D F++ +S+  KAS+E+V +  + I  +K      P+ILV  K+DL   ++         
Sbjct: 91  DGFLIVYSVTDKASFEHVDRFHQLILRVKDRE-SFPMILVANKVDLMHLRK--------- 140
Query: 137 PISTAQGEELRKLIGAPAYIECSSKTQQ-NVKAVFDAAIRVV 177
            ++  QG+E+      P YIE S+K    NV   F   +RV+
Sbjct: 141 -VTRDQGKEMATKYNIP-YIETSAKDPPLNVDKTFHDLVRVI 180

>pdb|3GJ4|A Chain A, Crystal Structure Of Human Rangdp-Nup153znf3 Complex Length = 221

Iteration: 1
 Score = 68.9 bits (167), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 41/121 (33%), Positives = 59/121 (48%), Gaps = 2/121 (1%)
Query: 7   IKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVV-VNGSTVNLGLWDTAGQE 65
            K V VGDG  GKT  +  + +      YV T+       V   N   +   +WDTAGQE
Sbjct: 16  FKLVLVGDGGTGKTTFVKRHLTGESEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQE 75
Query: 66  DYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLRDD 125
            +  LR   Y  A   I+ F + S+ +Y+NV   W  +L      +PI+L G K+D++D 
Sbjct: 76  KFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVP-NWHRDLVRVCENIPIVLCGNKVDIKDR 134
Query: 126 K 126
           K
Sbjct: 135 K 135

>pdb|2X19|A Chain A, Crystal Structure Of Importin13 - Rangtp Complex Length = 172

Iteration: 1
 Score = 67.8 bits (164), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 38/121 (31%), Positives = 60/121 (49%), Gaps = 2/121 (1%)
Query: 7   IKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTV-FDNFSANVVVNGSTVNLGLWDTAGQE 65
            K V VGDG  GKT  +  + +  F   Y+ T+  +    +   N   +   +WDTAG E
Sbjct: 6   FKLVLVGDGGTGKTTFVKRHLTGEFEKKYIATIGVEVHPLSFYTNFGEIKFDVWDTAGLE 65
Query: 66  DYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLRDD 125
            +  LR   Y  A   I+ F + S+ +Y+NV   W  +L      +PI+L G K+D+++ 
Sbjct: 66  KFGGLRDGYYINAQCAIIMFDVTSRITYKNVP-NWHRDLVRVCENIPIVLCGNKVDVKER 124
Query: 126 K 126
           K
Sbjct: 125 K 125

>pdb|3ICQ|B Chain B, Karyopherin Nuclear State Length = 171

Iteration: 1
 Score = 67.8 bits (164), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 38/121 (31%), Positives = 60/121 (49%), Gaps = 2/121 (1%)
Query: 7   IKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTV-FDNFSANVVVNGSTVNLGLWDTAGQE 65
            K V VGDG  GKT  +  + +  F   Y+ T+  +    +   N   +   +WDTAG E
Sbjct: 5   FKLVLVGDGGTGKTTFVKRHLTGEFEKKYIATIGVEVHPLSFYTNFGEIKFDVWDTAGLE 64
Query: 66  DYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLRDD 125
            +  LR   Y  A   I+ F + S+ +Y+NV   W  +L      +PI+L G K+D+++ 
Sbjct: 65  KFGGLRDGYYINAQCAIIMFDVTSRITYKNVP-NWHRDLVRVCENIPIVLCGNKVDVKER 123
Query: 126 K 126
           K
Sbjct: 124 K 124

>pdb|3M1I|A Chain A, Crystal Structure Of Yeast Crm1 (Xpo1p) In Complex With Yeas (Yrb1p) And Yeast Rangtp (Gsp1pgtp) Length = 219

Iteration: 1
 Score = 67.4 bits (163), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 38/121 (31%), Positives = 60/121 (49%), Gaps = 2/121 (1%)
Query: 7   IKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTV-FDNFSANVVVNGSTVNLGLWDTAGQE 65
            K V VGDG  GKT  +  + +  F   Y+ T+  +    +   N   +   +WDTAG E
Sbjct: 13  FKLVLVGDGGTGKTTFVKRHLTGEFEKKYIATIGVEVHPLSFYTNFGEIKFDVWDTAGLE 72
Query: 66  DYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLRDD 125
            +  LR   Y  A   I+ F + S+ +Y+NV   W  +L      +PI+L G K+D+++ 
Sbjct: 73  KFGGLRDGYYINAQCAIIMFDVTSRITYKNVP-NWHRDLVRVCENIPIVLCGNKVDVKER 131
Query: 126 K 126
           K
Sbjct: 132 K 132

>pdb|1XTQ|A Chain A, Structure Of Small Gtpase Human Rheb In Complex With Gdp Length = 177

Iteration: 1
 Score = 66.6 bits (161), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 57/181 (31%), Positives = 90/181 (49%), Gaps = 19/181 (10%)
Query: 1   MSASRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWD 60
           M  S+  K   +G  +VGK+ L I +    F   Y PT+ + F+  + VNG   +L L D
Sbjct: 1   MPQSKSRKIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTFTKLITVNGQEYHLQLVD 60
Query: 61  TAGQEDYNRLRPLSYRGADV--FILAFSLISKASYENVSKKWIPELKHYAP-GVPIILVG 117
           TAGQ++Y+ + P +Y   D+  +IL +S+ S  S+E +       L       +PI+LVG
Sbjct: 61  TAGQDEYS-IFPQTY-SIDINGYILVYSVTSIKSFEVIKVIHGKLLDMVGKVQIPIMLVG 118
Query: 118 TKLDLRDDKQFFIDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQQNVKAVFDAAIRVV 177
            K DL  ++           IS  +G+ L +   A A++E S+K  Q    VF    R++
Sbjct: 119 NKKDLHMER----------VISYEEGKALAESWNA-AFLESSAKENQTAVDVFR---RII 164
Query: 178 L 178
           L
Sbjct: 165 L 165

>pdb|3T5G|A Chain A, Structure Of Fully Modified Farnesylated Rheb In Complex With Pde6d Length = 181

Iteration: 1
 Score = 66.2 bits (160), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 56/180 (31%), Positives = 89/180 (49%), Gaps = 17/180 (9%)
Query: 1   MSASRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWD 60
           M  S+  K   +G  +VGK+ L I +    F   Y PT+ + F+  + VNG   +L L D
Sbjct: 1   MPQSKSRKIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTFTKLITVNGQEYHLQLVD 60
Query: 61  TAGQEDYNRLRPLSYR-GADVFILAFSLISKASYENVSKKWIPELKHYAP-GVPIILVGT 118
           TAGQ++Y+ + P +Y    + +IL +S+ S  S+E +       L       +PI+LVG 
Sbjct: 61  TAGQDEYS-IFPQTYSIDINGYILVYSVTSIKSFEVIKVIHGKLLDMVGKVQIPIMLVGN 119
Query: 119 KLDLRDDKQFFIDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQQNVKAVFDAAIRVVL 178
           K DL  ++           IS  +G+ L +   A A++E S+K  Q    VF    R++L
Sbjct: 120 KKDLHMER----------VISYEEGKALAESWNA-AFLESSAKENQTAVDVFR---RIIL 165

>pdb|2GF0|A Chain A, The Crystal Structure Of The Human Diras1 Gtpase In The Inactive Gdp Bound State Length = 199

Iteration: 1
 Score = 66.2 bits (160), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 44/158 (27%), Positives = 73/158 (46%), Gaps = 14/158 (8%)
Query: 19  KTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGA 78
           K+ L++ +   TF   Y+PT+ D +   +  + S   L + DT G   +  ++ LS    
Sbjct: 21  KSSLVLRFVKGTFRDTYIPTIEDTYRQVISCDKSVCTLQITDTTGSHQFPAMQRLSISKG 80
Query: 79  DVFILAFSLISKASYENVSK--KWIPELKHYAPGVPIILVGTKLDLRDDKQFFIDHPGAV 136
             FIL FS+ SK S E +    K I ++K     +P++LVG K    D+ Q  +D   A 
Sbjct: 81  HAFILVFSVTSKQSLEELGPIYKLIVQIKGSVEDIPVMLVGNKC---DETQREVDTREAQ 137
Query: 137 PISTAQGEELRKLIGAPAYIECSSKTQQNVKAVFDAAI 174
            ++              A++E S+K   NVK +F   +
Sbjct: 138 AVAQE---------WKCAFMETSAKMNYNVKELFQELL 166

>pdb|2L0X|A Chain A, Solution Structure Of The 21 Kda Gtpase Rheb Bound To Gdp Length = 169

Iteration: 1
 Score = 65.1 bits (157), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 55/174 (31%), Positives = 87/174 (50%), Gaps = 19/174 (10%)
Query: 8   KCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQEDY 67
           K   +G  +VGK+ L I +    F   Y PT+ + F+  + VNG   +L L DTAGQ++Y
Sbjct: 3   KIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTFTKLITVNGQEYHLQLVDTAGQDEY 62
Query: 68  NRLRPLSYRGADV--FILAFSLISKASYENVSKKWIPELKHYAP-GVPIILVGTKLDLRD 124
           + + P +Y   D+  +IL +S+ S  S+E +       L       +PI+LVG K DL  
Sbjct: 63  S-IFPQTY-SIDINGYILVYSVTSIKSFEVIKVIHGKLLDMVGKVQIPIMLVGNKKDLHM 120
Query: 125 DKQFFIDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQQNVKAVFDAAIRVVL 178
           ++           IS  +G+ L +   A A++E S+K  Q    VF    R++L
Sbjct: 121 ER----------VISYEEGKALAESWNA-AFLESSAKENQTAVDVFR---RIIL 160

>pdb|3SEA|A Chain A, Structure Of Rheb-Y35a Mutant In Gdp- And Gmppnp-Bound Forms Length = 167

Iteration: 1
 Score = 62.0 bits (149), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 57/180 (31%), Positives = 89/180 (49%), Gaps = 21/180 (11%)
Query: 2   SASRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWDT 61
           S SR  K   +G  +VGK+ L I +    F     PT+ + F+  + VNG   +L L DT
Sbjct: 2   SKSR--KIAILGYRSVGKSSLTIQFVEGQFVDSADPTIENTFTKLITVNGQEYHLQLVDT 59
Query: 62  AGQEDYNRLRPLSYRGADV--FILAFSLISKASYENVSKKWIPELKHYAP-GVPIILVGT 118
           AGQ++Y+ + P +Y   D+  +IL +S+ S  S+E +       L       +PI+LVG 
Sbjct: 60  AGQDEYS-IFPQTY-SIDINGYILVYSVTSIKSFEVIKVIHGKLLDMVGKVQIPIMLVGN 117
Query: 119 KLDLRDDKQFFIDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQQNVKAVFDAAIRVVL 178
           K DL  ++           IS  +G+ L +   A A++E S+K  Q    VF    R++L
Sbjct: 118 KKDLHMER----------VISYEEGKALAESWNA-AFLESSAKENQTAVDVFR---RIIL 163

>pdb|2CJW|A Chain A, Crystal Structure Of The Small Gtpase Gem (Gemdndcam) In Complex To Mg.Gdp Length = 192

Iteration: 1
 Score = 59.7 bits (143), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 41/178 (23%), Positives = 82/178 (46%), Gaps = 19/178 (10%)
Query: 6   FIKCVTVGDGAVGKTCL--LISYTSNTFPTDYVPTVFDNFSANVVVNGSTVN---LGLWD 60
           + + V +G+  VGK+ L  + +   ++  +D      D +   ++V+G +     L +W+
Sbjct: 6   YYRVVLIGEQGVGKSTLANIFAGVHDSMDSDXEVLGEDTYERTLMVDGESATIILLDMWE 65
Query: 61  TAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELK-HYAPGVPIILVGTK 119
             G+ ++  L     +  D +++ +S+  +AS+E  S+  I   +      +PIILVG K
Sbjct: 66  NKGENEW--LHDHCMQVGDAYLIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNK 123
Query: 120 LDLRDDKQFFIDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQQNVKAVFDAAIRVV 177
            DL   ++  +    A  +           +    +IE S+  Q NVK +F+  +R V
Sbjct: 124 SDLVRXREVSVSEGRAXAV-----------VFDXKFIETSAAVQHNVKELFEGIVRQV 170

>pdb|2CJW|B Chain B, Crystal Structure Of The Small Gtpase Gem (Gemdndcam) In Complex To Mg.Gdp Length = 192

Iteration: 1
 Score = 59.7 bits (143), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 41/178 (23%), Positives = 82/178 (46%), Gaps = 19/178 (10%)
Query: 6   FIKCVTVGDGAVGKTCL--LISYTSNTFPTDYVPTVFDNFSANVVVNGSTVN---LGLWD 60
           + + V +G+  VGK+ L  + +   ++  +D      D +   ++V+G +     L +W+
Sbjct: 6   YYRVVLIGEQGVGKSTLANIFAGVHDSMDSDXEVLGEDTYERTLMVDGESATIILLDMWE 65
Query: 61  TAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELK-HYAPGVPIILVGTK 119
             G+ ++  L     +  D +++ +S+  +AS+E  S+  I   +      +PIILVG K
Sbjct: 66  NKGENEW--LHDHXMQVGDAYLIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNK 123
Query: 120 LDLRDDKQFFIDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQQNVKAVFDAAIRVV 177
            DL   ++  +    A  +           +    +IE S+  Q NVK +F+  +R V
Sbjct: 124 SDLVRXREVSVSEGRAXAV-----------VFDCKFIETSAAVQHNVKELFEGIVRQV 170

>pdb|2HT6|A Chain A, Crystal Structure Of Human Gem G-Domain Bound To Gdp Length = 174

Iteration: 1
 Score = 58.5 bits (140), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 42/182 (23%), Positives = 84/182 (46%), Gaps = 19/182 (10%)
Query: 2   SASRFIKCVTVGDGAVGKTCL--LISYTSNTFPTDYVPTVFDNFSANVVVNGSTVN---L 56
           S + + + V +G+  VGK+ L  + +   ++  +D      D +   ++V+G +     L
Sbjct: 2   SGNTYYRVVLIGEQGVGKSTLANIFAGVHDSMDSDCEVLGEDTYERTLMVDGESATIILL 61
Query: 57  GLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELK-HYAPGVPIIL 115
            +W+  G+ ++  L     +  D +++ +S+  +AS+E  S+  I   +      +PIIL
Sbjct: 62  DMWENKGENEW--LHDHCMQVGDAYLIVYSITDRASFEKASELRIQLRRARQTEDIPIIL 119
Query: 116 VGTKLDLRDDKQFFIDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQQNVKAVFDAAIR 175
           VG K DL   ++  +    A  +           +    +IE S+  Q NVK +F+  +R
Sbjct: 120 VGNKSDLVRCREVSVSEGRACAV-----------VFDCKFIETSAAVQHNVKELFEGIVR 168
Query: 176 VV 177
            V
Sbjct: 169 QV 170

>pdb|2G3Y|A Chain A, Crystal Structure Of The Human Small Gtpase Gem Length = 211

Iteration: 1
 Score = 58.2 bits (139), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 42/182 (23%), Positives = 84/182 (46%), Gaps = 19/182 (10%)
Query: 2   SASRFIKCVTVGDGAVGKTCL--LISYTSNTFPTDYVPTVFDNFSANVVVNGSTVN---L 56
           S + + + V +G+  VGK+ L  + +   ++  +D      D +   ++V+G +     L
Sbjct: 33  SGNTYYRVVLIGEQGVGKSTLANIFAGVHDSMDSDCEVLGEDTYERTLMVDGESATIILL 92
Query: 57  GLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELK-HYAPGVPIIL 115
            +W+  G+ ++  L     +  D +++ +S+  +AS+E  S+  I   +      +PIIL
Sbjct: 93  DMWENKGENEW--LHDHCMQVGDAYLIVYSITDRASFEKASELRIQLRRARQTEDIPIIL 150
Query: 116 VGTKLDLRDDKQFFIDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQQNVKAVFDAAIR 175
           VG K DL   ++  +    A  +           +    +IE S+  Q NVK +F+  +R
Sbjct: 151 VGNKSDLVRCREVSVSEGRACAV-----------VFDCKFIETSAAVQHNVKELFEGIVR 199
Query: 176 VV 177
            V
Sbjct: 200 QV 201

>pdb|3CLV|A Chain A, Crystal Structure Of Rab5a From Plasmodium Falciparum, Pfb0500c Length = 208

Iteration: 1
 Score = 57.4 bits (137), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 55/208 (26%), Positives = 85/208 (40%), Gaps = 52/208 (25%)
Query: 1   MSASRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVV------------ 48
           M      K V +G+ +VGK+ +++  T +TF  +   T+  +F   VV            
Sbjct: 2   MEKKSSYKTVLLGESSVGKSSIVLRLTKDTFHENTNTTIGASFCTYVVNLNDINIKNNSN 61
Query: 49  --------------------------VNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFI 82
                                      N   +   +WDTAGQE Y  + PL YRGA   I
Sbjct: 62  NEKNNNINSINDDNNVIITNQHNNYNENLCNIKFDIWDTAGQERYASIVPLYYRGATCAI 121
Query: 83  LAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPISTAQ 142
           + F  IS ++  + +K W+ +LK  +    IILV  K+   D  +F +D         AQ
Sbjct: 122 VVFD-ISNSNTLDRAKTWVNQLK-ISSNYIIILVANKI---DKNKFQVDILEVQKY--AQ 174
Query: 143 GEELRKLIGAPAYIECSSKTQQNVKAVF 170
              L        +I+ S+KT  N+K +F
Sbjct: 175 DNNL-------LFIQTSAKTGTNIKNIF 195

>pdb|4DJT|A Chain A, Crystal Structure Of A Nuclear Gtp-Binding Protein From Encephalitozoon Cuniculi Bound To Gdp-Mg2+ Length = 218

Iteration: 1
 Score = 56.6 bits (135), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 44/172 (25%), Positives = 78/172 (45%), Gaps = 15/172 (8%)
Query: 8   KCVTVGDGAVGKTCLLISYTSNTFPTDYVPTV--FDNFSANVVVNGSTVNLGLWDTAGQE 65
           K   +GDG VGKT  +       F  +Y  TV   ++    +   G+ +   +WDTAGQE
Sbjct: 13  KICLIGDGGVGKTTYINRVLDGRFEKNYNATVGAVNHPVTFLDDQGNVIKFNVWDTAGQE 72
Query: 66  DYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPG-VPIILVGTKLDLRD 124
               L+ + Y GA   IL F + S+ + +N++ +W+ E +       PI++   K+D+++
Sbjct: 73  KKAVLKDVYYIGASGAILFFDVTSRITCQNLA-RWVKEFQAVVGNEAPIVVCANKIDIKN 131
Query: 125 DKQFFIDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQQNVKAVFDAAIRV 176
            ++        + +   +G+          Y E S+KT  N    F    R+
Sbjct: 132 RQKI----SKKLVMEVLKGKNYE-------YFEISAKTAHNFGLPFLHLARI 172

>pdb|2HXS|A Chain A, Crystal Structure Of Rab28a Gtpase In The Inactive (Gdp-3'p- Bound) Form Length = 178

Iteration: 1
 Score = 56.2 bits (134), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 39/128 (30%), Positives = 63/128 (49%), Gaps = 7/128 (5%)
Query: 2   SASRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTV-FDNFSANVVVNGS-TVNLGLW 59
           S  R +K V +GDGA GKT L   +   TF   Y  T+  D F   + + G+  V L +W
Sbjct: 2   SHMRQLKIVVLGDGASGKTSLTTCFAQETFGKQYKQTIGLDFFLRRITLPGNLNVTLQIW 61
Query: 60  DTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKW---IPELKHYAPGVPII-L 115
           D  GQ    ++      GA   +L + + +  S+EN+ + W   + ++   +   P++ L
Sbjct: 62  DIGGQTIGGKMLDKYIYGAQGVLLVYDITNYQSFENL-EDWYTVVKKVSEESETQPLVAL 120
Query: 116 VGTKLDLR 123
           VG K+DL 
Sbjct: 121 VGNKIDLE 128

>pdb|3CBQ|A Chain A, Crystal Structure Of The Human Rem2 Gtpase With Bound Gdp Length = 195

Iteration: 1
 Score = 53.1 bits (126), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 45/176 (25%), Positives = 80/176 (45%), Gaps = 20/176 (11%)
Query: 8   KCVTVGDGAVGKTCLLISYTSNTFPTDYVP-TVFDNFSANVVVNGSTVNLGLWDTAGQED 66
           K + VG+  VGK+ L  ++      + + P    D +   ++V+   V L ++D   Q D
Sbjct: 25  KVMLVGESGVGKSTLAGTFGGLQGDSAHEPENPEDTYERRIMVDKEEVTLVVYDIWEQGD 84
Query: 67  YNR-LRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAP--GVPIILVGTKLDLR 123
               LR    +  D F++ FS+  + S+  V +  +  L+   P   +P+ILVG K DL 
Sbjct: 85  AGGWLRDHCLQTGDAFLIVFSVTDRRSFSKVPETLL-RLRAGRPHHDLPVILVGNKSDLA 143
Query: 124 DDKQFFIDHPGAVPISTAQGEELRKLIGAPA--YIECSSKTQQNVKAVFDAAIRVV 177
             ++  +             EE R L G  +  +IE S+    N + +F+ A+R +
Sbjct: 144 RSREVSL-------------EEGRHLAGTLSCKHIETSAALHHNTRELFEGAVRQI 186

>pdb|2NZJ|A Chain A, The Crystal Structure Of Rem1 In Complex With Gdp Length = 175

Iteration: 1
 Score = 50.8 bits (120), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 42/168 (25%), Positives = 74/168 (44%), Gaps = 14/168 (8%)
Query: 8   KCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWDT--AGQE 65
           + V +GD  VGKT L   +        +     D +   + V+G    L + DT  A + 
Sbjct: 6   RVVLLGDPGVGKTSLASLFAGKQERDLHEQLGEDVYERTLTVDGEDTTLVVVDTWEAEKL 65
Query: 66  DYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELK-HYAPGVPIILVGTKLDLRD 124
           D +  +    +G   +++ +S+  + S+E+ S+  I   + H A  VPIILVG K DL  
Sbjct: 66  DKSWSQESCLQGGSAYVIVYSIADRGSFESASELRIQLRRTHQADHVPIILVGNKADLAR 125
Query: 125 DKQFFIDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQQNVKAVFDA 172
            ++  ++   A  +           +    +IE S+  Q NV  +F+ 
Sbjct: 126 CREVSVEEGRACAV-----------VFDCKFIETSATLQHNVAELFEG 162

>pdb|3Q85|A Chain A, Crystal Structure Of Rem2 G-Domain -Gtp Analog Complex Length = 169

Iteration: 1
 Score = 49.7 bits (117), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 45/178 (25%), Positives = 80/178 (44%), Gaps = 24/178 (13%)
Query: 8   KCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVF---DNFSANVVVNGSTVNLGLWDTAGQ 64
           K + VG+  VGK+ L  + T      D+   +    D +   ++V+   V L ++D   Q
Sbjct: 4   KVMLVGESGVGKSTL--AGTFGGLQGDHAHEMENSEDTYERRIMVDKEEVTLIVYDIWEQ 61
Query: 65  EDYNR-LRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAP--GVPIILVGTKLD 121
            D    L+    +  D F++ FS+  + S+  V +  +  L+   P   +P+ILVG K D
Sbjct: 62  GDAGGWLQDHCLQTGDAFLIVFSVTDRRSFSKVPETLL-RLRAGRPHHDLPVILVGNKSD 120
Query: 122 LRDDKQFFIDHPGAVPISTAQGEELRKLIGAPA--YIECSSKTQQNVKAVFDAAIRVV 177
           L   ++  +             EE R L G  +  +IE S+    N + +F+ A+R +
Sbjct: 121 LARSREVSL-------------EEGRHLAGTLSCKHIETSAALHHNTRELFEGAVRQI 165

>pdb|2GJS|A Chain A, The Crystal Structure Of Human Rrad In Complex With Gdp Length = 176

Iteration: 1
 Score = 48.5 bits (114), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 42/180 (23%), Positives = 77/180 (42%), Gaps = 17/180 (9%)
Query: 1   MSASRFIKCVTVGDGAVGKTCL--LISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGL 58
           MS     K + +G   VGK+ L  +     +    +     +D    ++VV+G   +L +
Sbjct: 2   MSDESVYKVLLLGAPGVGKSALARIFGGVEDGPEAEAAGHTYDR---SIVVDGEEASLMV 58
Query: 59  WDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELK-HYAPGVPIILVG 117
           +D   Q+    L        D +++ +S+  K S+E  S+  +   +      VPIILVG
Sbjct: 59  YDIWEQDGGRWLPGHCMAMGDAYVIVYSVTDKGSFEKASELRVQLRRARQTDDVPIILVG 118
Query: 118 TKLDLRDDKQFFIDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQQNVKAVFDAAIRVV 177
            K DL   ++  +D   A  +           +    +IE S+    NV+A+F+  +R +
Sbjct: 119 NKSDLVRSREVSVDEGRACAV-----------VFDCKFIETSAALHHNVQALFEGVVRQI 167

>pdb|4AII|A Chain A, Crystal Structure Of The Rat Rem2 Gtpase - G Domain Bound To Gdp Length = 180

Iteration: 1
 Score = 48.1 bits (113), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 42/176 (23%), Positives = 79/176 (44%), Gaps = 20/176 (11%)
Query: 8   KCVTVGDGAVGKTCLLISYTSNTFPTDY-VPTVFDNFSANVVVNGSTVNLGLWDTAGQED 66
           K + +G+  VGK+ L  ++        + +    D +   ++V+   V L ++D   Q D
Sbjct: 14  KVMLLGESGVGKSTLAGTFGGLQGDNAHEMENSEDTYERRIMVDKEEVTLIVYDIWEQGD 73
Query: 67  YNR-LRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAP--GVPIILVGTKLDLR 123
               L+    +  D F++ FS+  + S+  V +  +  L+   P   +P+ILVG K DL 
Sbjct: 74  AGGWLQDHCLQTGDAFLIVFSVTDRRSFSKVPETLL-RLRAGRPHHDLPVILVGNKSDLA 132
Query: 124 DDKQFFIDHPGAVPISTAQGEELRKLIGAPA--YIECSSKTQQNVKAVFDAAIRVV 177
             ++  +             EE R L G  +  +IE S+    N + +F+ A+R +
Sbjct: 133 RSREVSL-------------EEGRHLAGTLSCKHIETSAALHHNTRELFEGAVRQI 175

>pdb|3D6T|B Chain B, Structure Of The Roc Domain From The Parkinson's Disease-Associated Leucine-Rich Repeat Kinase 2 Reveals A Dimeric Gtpase Length = 171

Iteration: 1
 Score = 47.8 bits (112), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 36/133 (27%), Positives = 57/133 (42%), Gaps = 20/133 (15%)
Query: 8   KCVTVGDGAVGKTCLLI-------------SYTSNTFPTDYVPTVFDNFSANVVVNGSTV 54
           K   VG+   GKT LL              S T      D+   + D    ++V+N    
Sbjct: 2   KLXIVGNTGSGKTTLLQQLXKTKKSDLGXQSATVGIDVKDWPIQIRDKRKRDLVLN---- 57
Query: 55  NLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPII 114
              +WD AG+E++    P       +++  + L    +  +  K W+  +K  A   P+I
Sbjct: 58  ---VWDFAGREEFYSTHPHFXTQRALYLAVYDLSKGQAEVDAXKPWLFNIKARASSSPVI 114
Query: 115 LVGTKLDLRDDKQ 127
           LVGT LD+ D+KQ
Sbjct: 115 LVGTHLDVSDEKQ 127

>pdb|2DPX|A Chain A, Crystal Structure Of Human Rad Gtpase Length = 174

Iteration: 1
 Score = 47.4 bits (111), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 33/137 (24%), Positives = 62/137 (45%), Gaps = 12/137 (8%)
Query: 42  NFSANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWI 101
            +  ++VV+G   +L ++D   Q+    L        D +++ +S+  K S+E  S+  +
Sbjct: 42  TYDRSIVVDGEEASLMVYDIWEQDGGRWLPGHCMAMGDAYVIVYSVTDKGSFEKASELRV 101
Query: 102 PELK-HYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPISTAQGEELRKLIGAPAYIECSS 160
              +      VPIILVG K DL   ++  +D   A  +           +    +IE S+
Sbjct: 102 QLRRARQTDDVPIILVGNKSDLVRSREVSVDEGRACAV-----------VFDCKFIETSA 150
Query: 161 KTQQNVKAVFDAAIRVV 177
               NV+A+F+  +R +
Sbjct: 151 ALHHNVQALFEGVVRQI 167

>pdb|3Q72|A Chain A, Crystal Structure Of Rad G-Domain-Gtp Analog Complex Length = 166

Iteration: 1
 Score = 47.4 bits (111), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 33/137 (24%), Positives = 62/137 (45%), Gaps = 12/137 (8%)
Query: 42  NFSANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWI 101
            +  ++VV+G   +L ++D   Q+    L        D +++ +S+  K S+E  S+  +
Sbjct: 37  TYDRSIVVDGEEASLMVYDIWEQDGGRWLPGHCMAMGDAYVIVYSVTDKGSFEKASELRV 96
Query: 102 PELK-HYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPISTAQGEELRKLIGAPAYIECSS 160
              +      VPIILVG K DL   ++  +D   A  +           +    +IE S+
Sbjct: 97  QLRRARQTDDVPIILVGNKSDLVRSREVSVDEGRACAV-----------VFDCKFIETSA 145
Query: 161 KTQQNVKAVFDAAIRVV 177
               NV+A+F+  +R +
Sbjct: 146 ALHHNVQALFEGVVRQI 162

>pdb|2ZEJ|A Chain A, Structure Of The Roc Domain From The Parkinson's Disease-associated Leucine-rich Repeat Kinase 2 Reveals A Dimeric Gtpase Length = 184

Iteration: 1
 Score = 47.4 bits (111), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 36/133 (27%), Positives = 57/133 (42%), Gaps = 20/133 (15%)
Query: 8   KCVTVGDGAVGKTCLLI-------------SYTSNTFPTDYVPTVFDNFSANVVVNGSTV 54
           K   VG+   GKT LL              S T      D+   + D    ++V+N    
Sbjct: 4   KLXIVGNTGSGKTTLLQQLXKTKKSDLGXQSATVGIDVKDWPIQIRDKRKRDLVLN---- 59
Query: 55  NLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPII 114
              +WD AG+E++    P       +++  + L    +  +  K W+  +K  A   P+I
Sbjct: 60  ---VWDFAGREEFYSTHPHFXTQRALYLAVYDLSKGQAEVDAXKPWLFNIKARASSSPVI 116
Query: 115 LVGTKLDLRDDKQ 127
           LVGT LD+ D+KQ
Sbjct: 117 LVGTHLDVSDEKQ 129

>pdb|3C5C|A Chain A, Crystal Structure Of Human Ras-Like, Family 12 Protein In Complex With Gdp Length = 187

Iteration: 1
 Score = 43.1 bits (100), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 40/174 (22%), Positives = 79/174 (45%), Gaps = 18/174 (10%)
Query: 7   IKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQED 66
           +    +G    GK+ L + + +  F ++Y P + D +S+   V+   V+L + DTA  + 
Sbjct: 22  VNLAILGRRGAGKSALTVKFLTKRFISEYDPNLEDTYSSEETVDHQPVHLRVMDTADLDT 81
Query: 67  -YNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAP----GVPIILVGTKLD 121
             N  R L++  A  F++ +S +      + S  ++  L  +A      +P +L+G KLD
Sbjct: 82  PRNCERYLNW--AHAFLVVYS-VDSRQSFDSSSSYLELLALHAKETQRSIPALLLGNKLD 138
Query: 122 LRDDKQFFIDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQQNVKAVFDAAIR 175
           +   +Q          ++ A+G  L    G   +   +    ++V+ VF  A+R
Sbjct: 139 MAQYRQ----------VTKAEGVALAGRFGCLFFEVSACLDFEHVQHVFHEAVR 182

>pdb|2AL7|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 10c Length = 186

Iteration: 1
 Score = 42.7 bits (99), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 34/123 (27%), Positives = 53/123 (43%), Gaps = 9/123 (7%)
Query: 12  VGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQEDYNRLR 71
           VG    GKT  +    S  F  D +PTV   F+   V  G+ V + +WD  GQ  +  + 
Sbjct: 28  VGLQYSGKTTFVNVIASGQFSEDMIPTV--GFNMRKVTKGN-VTIKIWDIGGQPRFRSMW 84
Query: 72  PLSYRGADVFILAFSLISKASYENVSKKWIPEL--KHYAPGVPIILVGTKLDL---RDDK 126
               RG +  +       +   E  S+  +  L  K    G+P++++G K DL    D+K
Sbjct: 85  ERYCRGVNAIVYMIDAADREKIE-ASRNELHNLLDKPQLQGIPVLVLGNKRDLPNALDEK 143
Query: 127 QFF 129
           Q  
Sbjct: 144 QLI 146

>pdb|2YC2|C Chain C, Intraflagellar Transport Complex 25-27 From Chlamydomonas Length = 208

Iteration: 1
 Score = 42.0 bits (97), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 42/131 (32%), Positives = 61/131 (46%), Gaps = 10/131 (7%)
Query: 1   MSASRFIKCVTVGDGAVGKTCLLISYTS--NTFPTDYVPTV-FDNFSANVVVNGSTVN-- 55
           ++A+   K   VG+  VGK+ L+  +TS  + F  DY  T   +   A V +  +TV+  
Sbjct: 15  ITATLRCKVAVVGEATVGKSALISMFTSKGSKFLKDYAMTSGVEVVVAPVTIPDTTVSVE 74
Query: 56  LGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPG----V 111
           L L DTAG + Y       + G    IL F + S  S+E+  K W   LK   P     +
Sbjct: 75  LFLLDTAGSDLYKEQISQYWNGVYYAILVFDVSSMESFESC-KAWFELLKSARPDRERPL 133
Query: 112 PIILVGTKLDL 122
             +LV  K DL
Sbjct: 134 RAVLVANKTDL 144

>pdb|1ZD9|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 10b Length = 188

Iteration: 1
 Score = 41.2 bits (95), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 32/113 (28%), Positives = 48/113 (42%), Gaps = 6/113 (5%)
Query: 12  VGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQEDYNRLR 71
           VG    GKT  +    S  F  D +PTV   F+   +  G+ V + LWD  GQ  +  + 
Sbjct: 28  VGLQYSGKTTFVNVIASGQFNEDMIPTV--GFNMRKITKGN-VTIKLWDIGGQPRFRSMW 84
Query: 72  PLSYRGADVFILAFSLISKASYENVSKKWIPEL--KHYAPGVPIILVGTKLDL 122
               RG    +       +   E  SK  +  L  K    G+P++++G K DL
Sbjct: 85  ERYCRGVSAIVYMVDAADQEKIE-ASKNELHNLLDKPQLQGIPVLVLGNKRDL 136

>pdb|2H18|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 10b (Arl10b) Length = 193

Iteration: 1
 Score = 40.8 bits (94), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 32/118 (27%), Positives = 50/118 (42%), Gaps = 6/118 (5%)
Query: 7   IKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQED 66
           ++   VG    GKT  +    S  F  D +PTV   F+   +  G+ V + LWD  GQ  
Sbjct: 32  MELTLVGLQYSGKTTFVNVIASGQFNEDMIPTV--GFNMRKITKGN-VTIKLWDIGGQPR 88
Query: 67  YNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPEL--KHYAPGVPIILVGTKLDL 122
           +  +     RG    +       +   E  SK  +  L  K    G+P++++G K DL
Sbjct: 89  FRSMWERYCRGVSAIVYMVDAADQEKIE-ASKNELHNLLDKPQLQGIPVLVLGNKRDL 145

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	197
2j0v_A	212	RAC-like GTP-binding protein ARAC7; nucleotide-bin	1e-118
3bwd_D	182	RAC-like GTP-binding protein ARAC6; G domain, cyto	1e-114
3reg_A	194	RHO-like small GTPase; cytoskeleton, nucleotide-bi	1e-112
2q3h_A	201	RAS homolog gene family, member U; GTPase, structu	1e-109
2j1l_A	214	RHO-related GTP-binding protein RHOD; GTPase, memb	1e-107
2fv8_A	207	H6, RHO-related GTP-binding protein RHOB; GDP/GTP	1e-106
3th5_A	204	RAS-related C3 botulinum toxin substrate 1; rossma	1e-104
2gco_A	201	H9, RHO-related GTP-binding protein RHOC; GTPase,s	1e-104
1mh1_A	186	RAC1; GTP-binding, GTPase, small G-protein, RHO fa	1e-103
1gwn_A	205	RHO-related GTP-binding protein RHOE; GTPase, inac	1e-102
2atx_A	194	Small GTP binding protein TC10; GTPase, P-loop, al	1e-102
1m7b_A	184	RND3/RHOE small GTP-binding protein; small GTPase,	1e-100
3q3j_B	214	RHO-related GTP-binding protein RHO6; RAS-binding	3e-99
2wkq_A	332	NPH1-1, RAS-related C3 botulinum toxin substrate 1	2e-89
3oes_A	201	GTPase rhebl1; small GTPase, structural genomics,	1e-54
2gf0_A	199	GTP-binding protein DI-RAS1; GDP/GTP binding, GTP	5e-54
3t5g_A	181	GTP-binding protein RHEB; immunoglobulin-like beta	5e-53
2erx_A	172	GTP-binding protein DI-RAS2; GTP hydrolysis, trans	3e-52
4dsu_A	189	GTPase KRAS, isoform 2B; small G-protein, signalin	5e-52
2bov_A	206	RAla, RAS-related protein RAL-A; C3BOT, exoenzyme,	2e-51
1kao_A	167	RAP2A; GTP-binding protein, small G protein, GDP,	5e-50
2a9k_A	187	RAS-related protein RAL-A; bacterial ADP-ribosyltr	2e-49
2fn4_A	181	P23, RAS-related protein R-RAS; GDP/GTP binding, G	3e-49
1u8z_A	168	RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNH	4e-49
3con_A	190	GTPase NRAS; structural genomics consortium, SGC,	4e-49
1c1y_A	167	RAS-related protein RAP-1A; GTP-binding proteins,	8e-49
2ce2_X	166	GTPase HRAS; signaling protein, guanine nucleotide	2e-48
3kkq_A	183	RAS-related protein M-RAS; GTP-binding, GTPase, si	5e-48
2atv_A	196	RERG, RAS-like estrogen-regulated growth inhibitor	1e-47
3cbq_A	195	GTP-binding protein REM 2; FLJ38964A, structural g	7e-47
3q72_A	166	GTP-binding protein RAD; G-domain, CAV2 beta, sign	7e-47
2nzj_A	175	GTP-binding protein REM 1; GDP/GTP binding, GTP hy	9e-46
3q85_A	169	GTP-binding protein REM 2; G-domain, CAV2 beta, si	2e-45
3c5c_A	187	RAS-like protein 12; GDP, GTPase, structural genom	2e-45
1z2a_A	168	RAS-related protein RAB-23; RAB GTPase, vesicular	6e-45
3ihw_A	184	Centg3; RAS, centaurin, GTPase, structural genomic	1e-44
2g3y_A	211	GTP-binding protein GEM; small GTPase, GDP, inacti	2e-44
3tw8_B	181	RAS-related protein RAB-35; longin domain, RAB GTP	3e-44
3gj0_A	221	GTP-binding nuclear protein RAN; G protein, GDP, a	7e-44
2iwr_A	178	Centaurin gamma 1; ANK repeat, zinc-finger, GTP-bi	9e-44
2cjw_A	192	GTP-binding protein GEM; nucleotide-binding, small	3e-43
2hup_A	201	RAS-related protein RAB-43; G-protein, GDP, struct	5e-43
4djt_A	218	GTP-binding nuclear protein GSP1; structural genom	6e-43
1z08_A	170	RAS-related protein RAB-21; RAB GTPase, vesicular	2e-42
2efe_B	181	Small GTP-binding protein-like; GEF, GTPase, VPS9,	4e-42
2gf9_A	189	RAS-related protein RAB-3D; G-protein, structural	5e-42
1wms_A	177	RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, p	7e-42
2p5s_A	199	RAS and EF-hand domain containing; G-protein, RAB,	7e-42
2fu5_C	183	RAS-related protein RAB-8A; MSS4:RAB8 protein comp	9e-42
3l0i_B	199	RAS-related protein RAB-1A; GEF-GDF-RAB complex, G	9e-42
3bbp_A	211	RAB-6, RAS-related protein RAB-6A; golgi complex,	9e-42
2ew1_A	201	RAS-related protein RAB-30; G-protein, GTP analogu	1e-41
2fg5_A	192	RAB-22B, RAS-related protein RAB-31; G-protein, GT	1e-41
1ky3_A	182	GTP-binding protein YPT7P; vesicular traffic, GTP	1e-41
2y8e_A	179	RAB-protein 6, GH09086P, RAB6; hydrolase, nucleoti	1e-41
3dz8_A	191	RAS-related protein RAB-3B; GDP, GTPase, structura	2e-41
1zbd_A	203	Rabphilin-3A; G protein, effector, RABCDR, synapti	2e-41
2oil_A	193	CATX-8, RAS-related protein RAB-25; G-protein, GDP	2e-41
2a5j_A	191	RAS-related protein RAB-2B; GTPase, signal transdu	2e-41
3tkl_A	196	RAS-related protein RAB-1A; vesicle trafficking, p	2e-41
1r2q_A	170	RAS-related protein RAB-5A; GTPase, GNP, atomic re	3e-41
2bcg_Y	206	Protein YP2, GTP-binding protein YPT1; RABGTPase,	3e-41
1z0f_A	179	RAB14, member RAS oncogene family; RAB GTPase, ves	4e-41
2il1_A	192	RAB12; G-protein, GDP, GTPase, predicted, structur	5e-41
2bme_A	186	RAB4A, RAS-related protein RAB4A; GTP-binding prot	7e-41
2o52_A	200	RAS-related protein RAB-4B; G-protein, GDP, struct	8e-41
2f9l_A	199	RAB11B, member RAS oncogene family; RAB11B GTPase,	8e-41
3bc1_A	195	RAS-related protein RAB-27A; RAB27, GTPase, RAB, s	1e-40
1oix_A	191	RAS-related protein RAB-11A; small G protein, intr	2e-40
1z0j_A	170	RAB-22, RAS-related protein RAB-22A; RAB GTPase, R	3e-40
1x3s_A	195	RAS-related protein RAB-18; GTPase, GNP, structura	3e-40
3cpj_B	223	GTP-binding protein YPT31/YPT8; RAB GTPase, prenyl	4e-40
2f7s_A	217	C25KG, RAS-related protein RAB-27B; G-protein, str	5e-40
1vg8_A	207	RAS-related protein RAB-7; GTP-binding protein, pr	6e-40
1g16_A	170	RAS-related protein SEC4; G protein RAB, signaling	2e-39
3cph_A	213	RAS-related protein SEC4; RAB GTPase, prenylation,	2e-39
2g6b_A	180	RAS-related protein RAB-26; G-protein, GTP analogu	3e-39
2hxs_A	178	RAB-26, RAS-related protein RAB-28; GTPase, signal	3e-38
2zej_A	184	Dardarin, leucine-rich repeat kinase 2; parkinson'	7e-38
1z06_A	189	RAS-related protein RAB-33B; RAB GTPase, RAB33B GT	3e-37
2yc2_C	208	IFT27, small RAB-related GTPase; transport protein	1e-36
3dpu_A	535	RAB family protein; roccor, G-domain, COR, GTP-bin	2e-34
1ek0_A	170	Protein (GTP-binding protein YPT51); vesicular tra	1e-33
3clv_A	208	RAB5 protein, putative; malaria, GTPase, structura	3e-32
3c5h_A	255	Glucocorticoid receptor DNA-binding factor 1; RAS,	3e-14
3t1o_A	198	Gliding protein MGLA; G domain containing protein,	3e-13
3r7w_A	307	Gtpase1, GTP-binding protein GTR1; RAG gtpases, GT	3e-11
3llu_A	196	RAS-related GTP-binding protein C; structural geno	3e-08
3r7w_B	331	Gtpase2, GTP-binding protein GTR2; RAG gtpases, GT	8e-05
1zd9_A	188	ADP-ribosylation factor-like 10B; transport protei	3e-04
2fh5_B	214	SR-beta, signal recognition particle receptor beta	9e-04

>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana} Length = 212

 Score =  332 bits (853), Expect = e-118
 Identities = 151/200 (75%), Positives = 170/200 (85%), Gaps = 6/200 (3%)

Query: 1   MSASRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWD 60
           MS S+FIKCVTVGDGAVGKTC+LI YTSN FPTDY+PTVFDNFSANV V+G  VNLGLWD
Sbjct: 4   MSVSKFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVAVDGQIVNLGLWD 63

Query: 61  TAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKL 120
           TAGQEDY+RLRPLSYRGAD+F+LAFSLISKASYENV KKW+PEL+ +AP VPI+LVGTKL
Sbjct: 64  TAGQEDYSRLRPLSYRGADIFVLAFSLISKASYENVLKKWMPELRRFAPNVPIVLVGTKL 123

Query: 121 DLRDDKQFFIDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQQNVKAVFDAAIRVVLQP 180
           DLRDDK +  DH     I++ QGEELRK IGA AYIECSSKTQQNVKAVFD AI+VVLQP
Sbjct: 124 DLRDDKGYLADHTN--VITSTQGEELRKQIGAAAYIECSSKTQQNVKAVFDTAIKVVLQP 181

Query: 181 PKTK----KKKNKAQKACSI 196
           P+ K    ++KN  +  CSI
Sbjct: 182 PRRKEVPRRRKNHRRSGCSI 201

>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C Length = 182

 Score =  320 bits (823), Expect = e-114
 Identities = 172/180 (95%), Positives = 178/180 (98%)

Query: 1   MSASRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWD 60
           MSASRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNG+TVNLGLWD
Sbjct: 3   MSASRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGATVNLGLWD 62

Query: 61  TAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKL 120
           TAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPI+LVGTKL
Sbjct: 63  TAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIVLVGTKL 122

Query: 121 DLRDDKQFFIDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQQNVKAVFDAAIRVVLQP 180
           DLRDDKQFFIDHPGAVPI+T QGEEL+KLIGAPAYIECSSK+Q+NVK VFDAAIRVVLQP
Sbjct: 123 DLRDDKQFFIDHPGAVPITTVQGEELKKLIGAPAYIECSSKSQENVKGVFDAAIRVVLQP 182

>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* Length = 194

 Score =  317 bits (815), Expect = e-112
 Identities = 76/184 (41%), Positives = 112/184 (60%), Gaps = 8/184 (4%)

Query: 2   SASRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWDT 61
           +  + +K V VGDGAVGKTCLL++++    PT YVPTVF+NFS  +        L LWDT
Sbjct: 19  NGKKALKIVVVGDGAVGKTCLLLAFSKGEIPTAYVPTVFENFSHVMKYKNEEFILHLWDT 78

Query: 62  AGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLD 121
           AGQE+Y+RLRPLSY  +DV +L F++ ++ S++N+S KW PE+KHY      +LVG K+D
Sbjct: 79  AGQEEYDRLRPLSYADSDVVLLCFAVNNRTSFDNISTKWEPEIKHYIDTAKTVLVGLKVD 138

Query: 122 LRDDKQFFIDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQQNVKAVFDAAIRVVLQPP 181
           LR D            ++  +G++L + +G  AYIE SS  +  +  VF+ ++  +    
Sbjct: 139 LRKDGS--------DDVTKQEGDDLCQKLGCVAYIEASSVAKIGLNEVFEKSVDCIFSNK 190

Query: 182 KTKK 185
              K
Sbjct: 191 PVPK 194

>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens} Length = 201

 Score =  310 bits (795), Expect = e-109
 Identities = 94/187 (50%), Positives = 133/187 (71%), Gaps = 2/187 (1%)

Query: 1   MSASRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWD 60
            +  R +KCV VGDGAVGKT L++SYT+N +PT+Y+PT FDNFSA V V+G  V L L D
Sbjct: 15  GAEGRGVKCVLVGDGAVGKTSLVVSYTTNGYPTEYIPTAFDNFSAVVSVDGRPVRLQLCD 74

Query: 61  TAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKL 120
           TAGQ+++++LRPL Y   D+F+L FS++S +S++NVS+KW+PE++ + P  PIILVGT+ 
Sbjct: 75  TAGQDEFDKLRPLCYTNTDIFLLCFSVVSPSSFQNVSEKWVPEIRCHCPKAPIILVGTQS 134

Query: 121 DLRDDKQFFI--DHPGAVPISTAQGEELRKLIGAPAYIECSSKTQQNVKAVFDAAIRVVL 178
           DLR+D +  I  D     P+     + L + I A +YIECS+ TQ+N+K VFDAAI   +
Sbjct: 135 DLREDVKVLIELDKCKEKPVPEEAAKLLAEEIKAASYIECSALTQKNLKEVFDAAIVAGI 194

Query: 179 QPPKTKK 185
           Q   T++
Sbjct: 195 QYSDTQQ 201

>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens} Length = 214

 Score =  304 bits (780), Expect = e-107
 Identities = 81/186 (43%), Positives = 112/186 (60%), Gaps = 6/186 (3%)

Query: 5   RFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQ 64
           R +K V VGDG  GKT LL+ +    FP  Y PTVF+ +  N+ V G  V+L +WDTAGQ
Sbjct: 33  RSVKVVLVGDGGCGKTSLLMVFADGAFPESYTPTVFERYMVNLQVKGKPVHLHIWDTAGQ 92

Query: 65  EDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLRD 124
           +DY+RLRPL Y  A V +L F + S  S++N+  +W PE+ H+   VPII+VG K DLR 
Sbjct: 93  DDYDRLRPLFYPDASVLLLCFDVTSPNSFDNIFNRWYPEVNHFCKKVPIIVVGCKTDLRK 152

Query: 125 DKQFFID--HPGAVPISTAQGEELRKLIGAPAYIECSSKTQQNVKAVFDAAIRVVLQPPK 182
           DK         G  P++  +G+E+ + +GA AY+ECS++   NV AVF  A  V L    
Sbjct: 153 DKSLVNKLRRNGLEPVTYHRGQEMARSVGAVAYLECSARLHDNVHAVFQEAAEVALSS-- 210

Query: 183 TKKKKN 188
             + +N
Sbjct: 211 --RGRN 214

>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8 Length = 207

 Score =  303 bits (777), Expect = e-106
 Identities = 89/181 (49%), Positives = 117/181 (64%), Gaps = 2/181 (1%)

Query: 7   IKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQED 66
            K V VGDGA GKTCLLI ++ + FP  YVPTVF+N+ A++ V+G  V L LWDTAGQED
Sbjct: 26  KKLVVVGDGACGKTCLLIVFSKDEFPEVYVPTVFENYVADIEVDGKQVELALWDTAGQED 85

Query: 67  YNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLRDDK 126
           Y+RLRPLSY   DV ++ FS+ S  S EN+ +KW+PE+KH+ P VPIILV  K DLR D+
Sbjct: 86  YDRLRPLSYPDTDVILMCFSVDSPDSLENIPEKWVPEVKHFCPNVPIILVANKKDLRSDE 145

Query: 127 QFFIDHP--GAVPISTAQGEELRKLIGAPAYIECSSKTQQNVKAVFDAAIRVVLQPPKTK 184
               +       P+ T  G  +   I A  Y+ECS+KT++ V+ VF+ A R  LQ     
Sbjct: 146 HVRTELARMKQEPVRTDDGRAMAVRIQAYDYLECSAKTKEGVREVFETATRAALQKRYGS 205

Query: 185 K 185
           +
Sbjct: 206 Q 206

>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens} Length = 204

 Score =  298 bits (765), Expect = e-104
 Identities = 113/177 (63%), Positives = 135/177 (76%), Gaps = 2/177 (1%)

Query: 4   SRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWDTAG 63
            + IKCV VGDGAVGKTCLLISYT+N FP +Y+PTVFDN+SANV+V+G  VNLGLWDTAG
Sbjct: 28  GQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAG 87

Query: 64  QEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLR 123
           QEDY+RLRPLSY   DVF++ FSL+S AS+ENV  KW PE++H+ P  PIILVGTKLDLR
Sbjct: 88  QEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLR 147

Query: 124 DDKQFF--IDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQQNVKAVFDAAIRVVL 178
           DDK     +      PI+  QG  + K IGA  Y+ECS+ TQ+ +K VFD AIR VL
Sbjct: 148 DDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAVL 204

>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ... Length = 201

 Score =  297 bits (763), Expect = e-104
 Identities = 92/181 (50%), Positives = 122/181 (67%), Gaps = 3/181 (1%)

Query: 1   MSASRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWD 60
           M+A R  K V VGDGA GKTCLLI ++ + FP  YVPTVF+N+ A++ V+G  V L LWD
Sbjct: 21  MAAIR-KKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYIADIEVDGKQVELALWD 79

Query: 61  TAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKL 120
           TAGQEDY+RLRPLSY   DV ++ FS+ S  S EN+ +KW PE+KH+ P VPIILVG K 
Sbjct: 80  TAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKK 139

Query: 121 DLRDDKQFFID--HPGAVPISTAQGEELRKLIGAPAYIECSSKTQQNVKAVFDAAIRVVL 178
           DLR D+    +       P+ + +G ++   I A  Y+ECS+KT++ V+ VF+ A R  L
Sbjct: 140 DLRQDEHTRRELAKMKQEPVRSEEGRDMANRISAFGYLECSAKTKEGVREVFEMATRAGL 199

Query: 179 Q 179
           Q
Sbjct: 200 Q 200

>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ... Length = 186

 Score =  293 bits (752), Expect = e-103
 Identities = 116/185 (62%), Positives = 138/185 (74%), Gaps = 2/185 (1%)

Query: 3   ASRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWDTA 62
           + + IKCV VGDGAVGKTCLLISYT+N FP +Y+PTVFDN+SANV+V+G  VNLGLWDTA
Sbjct: 2   SPQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTA 61

Query: 63  GQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDL 122
           GQEDY+RLRPLSY   DV ++ FSL+S AS+ENV  KW PE++H+ P  PIILVGTKLDL
Sbjct: 62  GQEDYDRLRPLSYPQTDVSLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDL 121

Query: 123 RDDKQFFID--HPGAVPISTAQGEELRKLIGAPAYIECSSKTQQNVKAVFDAAIRVVLQP 180
           RDDK            PI+  QG  + K IGA  Y+ECS+ TQ+ +K VFD AIR VL P
Sbjct: 122 RDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAVLCP 181

Query: 181 PKTKK 185
           P  KK
Sbjct: 182 PPVKK 186

>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8 Length = 205

 Score =  292 bits (748), Expect = e-102
 Identities = 65/176 (36%), Positives = 100/176 (56%), Gaps = 3/176 (1%)

Query: 7   IKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQED 66
            K V VGD   GKT LL  +  + FP +YVPTVF+N++A+  ++   + L LWDT+G   
Sbjct: 29  CKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYTASFEIDTQRIELSLWDTSGSPY 88

Query: 67  YNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLRDDK 126
           Y+ +RPLSY  +D  ++ F +    + ++V KKW  E++ + P   ++LVG K DLR D 
Sbjct: 89  YDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFCPNTKMLLVGCKSDLRTDV 148

Query: 127 QFFID--HPGAVPISTAQGEELRKLIGAPAYIECSSKTQQN-VKAVFDAAIRVVLQ 179
              ++  +    P+S  QG  + K IGA  YIECS+   +N V+ +F  A    + 
Sbjct: 149 STLVELSNHRQTPVSYDQGANMAKQIGAATYIECSALQSENSVRDIFHVATLACVN 204

>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8 Length = 194

 Score =  291 bits (747), Expect = e-102
 Identities = 97/180 (53%), Positives = 132/180 (73%), Gaps = 2/180 (1%)

Query: 3   ASRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWDTA 62
            +  +KCV VGDGAVGKTCLL+SY ++ FP +YVPTVFD+++ +V V G    LGL+DTA
Sbjct: 15  GALMLKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVFDHYAVSVTVGGKQYLLGLYDTA 74

Query: 63  GQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDL 122
           GQEDY+RLRPLSY   DVF++ FS+++ AS++NV ++W+PELK YAP VP +L+GT++DL
Sbjct: 75  GQEDYDRLRPLSYPMTDVFLICFSVVNPASFQNVKEEWVPELKEYAPNVPFLLIGTQIDL 134

Query: 123 RDDKQFFI--DHPGAVPISTAQGEELRKLIGAPAYIECSSKTQQNVKAVFDAAIRVVLQP 180
           RDD +     +     PI   QG++L K IGA  Y+ECS+ TQ+ +K VFD AI  +L P
Sbjct: 135 RDDPKTLARLNDMKEKPICVEQGQKLAKEIGACCYVECSALTQKGLKTVFDEAIIAILTP 194

>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B* Length = 184

 Score =  285 bits (731), Expect = e-100
 Identities = 65/176 (36%), Positives = 100/176 (56%), Gaps = 3/176 (1%)

Query: 7   IKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQED 66
            K V VGD   GKT LL  +  + FP +YVPTVF+N++A+  ++   + L LWDT+G   
Sbjct: 8   CKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYTASFEIDTQRIELSLWDTSGSPY 67

Query: 67  YNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLRDDK 126
           Y+ +RPLSY  +D  ++ F +    + ++V KKW  E++ + P   ++LVG K DLR D 
Sbjct: 68  YDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFCPNTKMLLVGCKSDLRTDV 127

Query: 127 QFFID--HPGAVPISTAQGEELRKLIGAPAYIECSSKTQQN-VKAVFDAAIRVVLQ 179
              ++  +    P+S  QG  + K IGA  YIECS+   +N V+ +F  A    + 
Sbjct: 128 STLVELSNHRQTPVSYDQGANMAKQIGAATYIECSALQSENSVRDIFHVATLACVN 183

>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A* Length = 214

 Score =  285 bits (730), Expect = 3e-99
 Identities = 64/190 (33%), Positives = 98/190 (51%), Gaps = 3/190 (1%)

Query: 2   SASRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWDT 61
                 K V VGD   GKT +L     + +P  YVPTVF+N++A +      V L LWDT
Sbjct: 23  PVVARCKLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENYTACLETEEQRVELSLWDT 82

Query: 62  AGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLD 121
           +G   Y+ +RPL Y  +D  +L F +    + ++  KKW  E+  Y P   ++L+G K D
Sbjct: 83  SGSPYYDNVRPLCYSDSDAVLLCFDISRPETVDSALKKWRTEILDYCPSTRVLLIGCKTD 142

Query: 122 LRDDKQFFID--HPGAVPISTAQGEELRKLIGAPAYIECSSKTQQ-NVKAVFDAAIRVVL 178
           LR D    ++  H    PIS  QG  + K +GA  Y+E S+ T + ++ ++F  A  + L
Sbjct: 143 LRTDLSTLMELSHQKQAPISYEQGCAIAKQLGAEIYLEGSAFTSEKSIHSIFRTASMLCL 202

Query: 179 QPPKTKKKKN 188
             P    +K+
Sbjct: 203 NKPSPLPQKS 212

>2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase, cell adhesion, nucleotide-binding, protein engineering, RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa} PDB: 2wkr_A* 2wkp_A* Length = 332

 Score =  264 bits (677), Expect = 2e-89
 Identities = 113/183 (61%), Positives = 135/183 (73%), Gaps = 2/183 (1%)

Query: 1   MSASRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWD 60
            +A   IKCV VGDGAVGKTCLLISYT+N FP +Y+PTVFDN+SANV+V+G  VNLGLWD
Sbjct: 150 EAAKELIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWD 209

Query: 61  TAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKL 120
           TAG EDY+RLRPLSY   DVF++ FSL+S AS+ +V  KW PE++H+ P  PIILVGTKL
Sbjct: 210 TAGLEDYDRLRPLSYPQTDVFLICFSLVSPASFHHVRAKWYPEVRHHCPNTPIILVGTKL 269

Query: 121 DLRDDKQFFID--HPGAVPISTAQGEELRKLIGAPAYIECSSKTQQNVKAVFDAAIRVVL 178
           DLRDDK            PI+  QG  + K IGA  Y+ECS+ TQ+ +K VFD AIR VL
Sbjct: 270 DLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAVL 329

Query: 179 QPP 181
            PP
Sbjct: 330 CPP 332

>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens} Length = 201

 Score =  171 bits (436), Expect = 1e-54
 Identities = 51/199 (25%), Positives = 95/199 (47%), Gaps = 18/199 (9%)

Query: 1   MSASRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWD 60
           M   R+ K V +G   VGKT L   +    F   Y PTV + +S  V +     +L L D
Sbjct: 19  MPLVRYRKVVILGYRCVGKTSLAHQFVEGEFSEGYDPTVENTYSKIVTLGKDEFHLHLVD 78

Query: 61  TAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELK--HYAPGVPIILVGT 118
           TAGQ++Y+ L      G   ++L +S+ S  S++ + +    +L   H    VP++LVG 
Sbjct: 79  TAGQDEYSILPYSFIIGVHGYVLVYSVTSLHSFQVI-ESLYQKLHEGHGKTRVPVVLVGN 137

Query: 119 KLDLRDDKQFFIDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQQNVKAVFDAAIRVVL 178
           K DL  +++          +   +G++L +  GA  ++E S++  Q  + +F   I+ + 
Sbjct: 138 KADLSPERE----------VQAVEGKKLAESWGAT-FMESSARENQLTQGIFTKVIQEIA 186

Query: 179 QPPKTKKKKNKAQKACSIL 197
           +   +  ++ +    C ++
Sbjct: 187 RVENSYGQERR----CHLM 201

>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8 Length = 199

 Score =  169 bits (431), Expect = 5e-54
 Identities = 49/206 (23%), Positives = 92/206 (44%), Gaps = 24/206 (11%)

Query: 4   SRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWDTAG 63
           S   + V  G G VGK+ L++ +   TF   Y+PT+ D +   +  + S   L + DT G
Sbjct: 6   SNDYRVVVFGAGGVGKSSLVLRFVKGTFRDTYIPTIEDTYRQVISCDKSVCTLQITDTTG 65

Query: 64  QEDYNRLRPLSYRGADVFILAFSLISKASYENVSK--KWIPELKHYAPGVPIILVGTKLD 121
              +  ++ LS      FIL FS+ SK S E +    K I ++K     +P++LVG K D
Sbjct: 66  SHQFPAMQRLSISKGHAFILVFSVTSKQSLEELGPIYKLIVQIKGSVEDIPVMLVGNKCD 125

Query: 122 LRDDKQFFIDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQQNVKAVFDAAIRVVLQ-- 179
               ++          + T + + + +      ++E S+K   NVK +F   + +  +  
Sbjct: 126 E-TQRE----------VDTREAQAVAQEWKCA-FMETSAKMNYNVKELFQELLTLETRRN 173

Query: 180 --------PPKTKKKKNKAQKACSIL 197
                       +K+ ++ +  C+++
Sbjct: 174 MSLNIDGKRSGKQKRTDRVKGKCTLM 199

>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* Length = 181

 Score =  166 bits (423), Expect = 5e-53
 Identities = 54/192 (28%), Positives = 88/192 (45%), Gaps = 16/192 (8%)

Query: 1   MSASRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWD 60
           M  S+  K   +G  +VGK+ L I +    F   Y PT+ + F+  + VNG   +L L D
Sbjct: 1   MPQSKSRKIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTFTKLITVNGQEYHLQLVD 60

Query: 61  TAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELK--HYAPGVPIILVGT 118
           TAGQ++Y+          + +IL +S+ S  S+E + K    +L        +PI+LVG 
Sbjct: 61  TAGQDEYSIFPQTYSIDINGYILVYSVTSIKSFEVI-KVIHGKLLDMVGKVQIPIMLVGN 119

Query: 119 KLDLRDDKQFFIDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQQNVKAVFDAAIRVV- 177
           K DL  ++           IS  +G+ L +   A  ++E S+K  Q    VF   I    
Sbjct: 120 KKDLHMERV----------ISYEEGKALAESWNAA-FLESSAKENQTAVDVFRRIILEAE 168

Query: 178 -LQPPKTKKKKN 188
            +    ++ K +
Sbjct: 169 KMDGACSQGKSS 180

>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 Length = 172

 Score =  164 bits (418), Expect = 3e-52
 Identities = 48/179 (26%), Positives = 82/179 (45%), Gaps = 15/179 (8%)

Query: 4   SRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWDTAG 63
           S   +    G G VGK+ L++ +   TF   Y+PTV D +   +  + S   L + DT G
Sbjct: 1   SNDYRVAVFGAGGVGKSSLVLRFVKGTFRESYIPTVEDTYRQVISCDKSICTLQITDTTG 60

Query: 64  QEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKW---IPELKHYAPGVPIILVGTKL 120
              +  ++ LS      FIL +S+ S+ S E + K     I E+K     +PI+LVG K 
Sbjct: 61  SHQFPAMQRLSISKGHAFILVYSITSRQSLEEL-KPIYEQICEIKGDVESIPIMLVGNKC 119

Query: 121 DLRDDKQFFIDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQQNVKAVFDAAIRVVLQ 179
           D    ++          + +++ E L +      ++E S+K   NVK +F   + +  +
Sbjct: 120 DESPSRE----------VQSSEAEALARTWKCA-FMETSAKLNHNVKELFQELLNLEKR 167

>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A* Length = 189

 Score =  164 bits (418), Expect = 5e-52
 Identities = 64/202 (31%), Positives = 102/202 (50%), Gaps = 20/202 (9%)

Query: 3   ASRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWDTA 62
            S   K V VG   VGK+ L I    N F  +Y PT+ D++   VV++G T  L + DTA
Sbjct: 1   GSTEYKLVVVGADGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTA 60

Query: 63  GQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYA--PGVPIILVGTKL 120
           GQE+Y+ +R    R  + F+  F++ +  S+E++   +  ++K       VP++LVG K 
Sbjct: 61  GQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDI-HHYREQIKRVKDSEDVPMVLVGNKC 119

Query: 121 DLRDDKQFFIDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQQNVKAVFDAAIRVVLQ- 179
           DL   +           + T Q ++L +  G P +IE S+KT+Q V   F   +R + + 
Sbjct: 120 DL-PSRT----------VDTKQAQDLARSYGIP-FIETSAKTRQGVDDAFYTLVREIRKH 167

Query: 180 ----PPKTKKKKNKAQKACSIL 197
                   KKKK K++  C I+
Sbjct: 168 KEKMSKDGKKKKKKSKTKCVIM 189

>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens} Length = 206

 Score =  163 bits (415), Expect = 2e-51
 Identities = 58/206 (28%), Positives = 92/206 (44%), Gaps = 25/206 (12%)

Query: 5   RFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQ 64
              K + VG G VGK+ L + +  + F  DY PT  D++   VV++G  V + + DTAGQ
Sbjct: 13  ALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEEVQIDILDTAGQ 72

Query: 65  EDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYA--PGVPIILVGTKLDL 122
           EDY  +R   +R  + F+  FS+    S+      +  ++        VP +LVG K DL
Sbjct: 73  EDYAAIRDNYFRSGEGFLCVFSITEMESFAAT-ADFREQILRVKEDENVPFLLVGNKSDL 131

Query: 123 RDDKQFFIDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQQNVKAVFDAAIRVVLQ--- 179
            D +Q          +S  + +   +      Y+E S+KT+ NV  VF   +R +     
Sbjct: 132 EDKRQ----------VSVEEAKNRAEQWNVN-YVETSAKTRANVDKVFFDLMREIRARKM 180

Query: 180 --------PPKTKKKKNKAQKACSIL 197
                     K K    + ++ C IL
Sbjct: 181 EDSKEKNGKKKRKSLAKRIRERCCIL 206

>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R* Length = 167

 Score =  158 bits (403), Expect = 5e-50
 Identities = 51/170 (30%), Positives = 91/170 (53%), Gaps = 14/170 (8%)

Query: 8   KCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQEDY 67
           K V +G G VGK+ L + + + TF   Y PT+ D +   + V+ S   L + DTAG E +
Sbjct: 5   KVVVLGSGGVGKSALTVQFVTGTFIEKYDPTIEDFYRKEIEVDSSPSVLEILDTAGTEQF 64

Query: 68  NRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHY--APGVPIILVGTKLDLRDD 125
             +R L  +    FIL +SL+++ S++++ K    ++        VP+ILVG K+DL  +
Sbjct: 65  ASMRDLYIKNGQGFILVYSLVNQQSFQDI-KPMRDQIIRVKRYEKVPVILVGNKVDLESE 123

Query: 126 KQFFIDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQQNVKAVFDAAIR 175
           ++          +S+++G  L +  G P ++E S+K++  V  +F   +R
Sbjct: 124 RE----------VSSSEGRALAEEWGCP-FMETSAKSKTMVDELFAEIVR 162

>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A* Length = 187

 Score =  157 bits (400), Expect = 2e-49
 Identities = 54/187 (28%), Positives = 88/187 (47%), Gaps = 20/187 (10%)

Query: 5   RFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQ 64
              K + VG G VGK+ L + +  + F  DY PT  D++   VV++G  V + + DTAGQ
Sbjct: 17  ALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEEVQIDILDTAGQ 76

Query: 65  EDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHY--APGVPIILVGTKLDL 122
           EDY  +R   +R  + F+  FS+    S+      +  ++        VP +LVG K DL
Sbjct: 77  EDYAAIRDNYFRSGEGFLCVFSITEMESFAAT-ADFREQILRVKEDENVPFLLVGNKSDL 135

Query: 123 RDDKQFFIDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQQNVKAVFDAAIRVVLQPPK 182
            D +Q          +S  + +   +      Y+E S+KT+ NV  VF   +R +     
Sbjct: 136 EDKRQ----------VSVEEAKNRAEQWNVN-YVETSAKTRANVDKVFFDLMREI----- 179

Query: 183 TKKKKNK 189
            + +K +
Sbjct: 180 -RARKME 185

>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A* Length = 181

 Score =  156 bits (398), Expect = 3e-49
 Identities = 52/191 (27%), Positives = 85/191 (44%), Gaps = 20/191 (10%)

Query: 4   SRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWDTAG 63
           S   K V VG G VGK+ L I +  + F +DY PT+ D+++    V+G    L + DTAG
Sbjct: 7   SETHKLVVVGGGGVGKSALTIQFIQSYFVSDYDPTIEDSYTKICSVDGIPARLDILDTAG 66

Query: 64  QEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHY--APGVPIILVGTKLD 121
           QE++  +R    R    F+L F++  + S+  V  K   ++         P++LVG K D
Sbjct: 67  QEEFGAMREQYMRAGHGFLLVFAINDRQSFNEV-GKLFTQILRVKDRDDFPVVLVGNKAD 125

Query: 122 LRDDKQFFIDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQQNVKAVFDAAIRVVLQPP 181
           L   +Q          +  ++            Y E S+K + NV   F+  +R V    
Sbjct: 126 LESQRQ----------VPRSEASAFGASHHVA-YFEASAKLRLNVDEAFEQLVRAV---- 170

Query: 182 KTKKKKNKAQK 192
             +K + +   
Sbjct: 171 --RKYQEQELP 179

>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A* Length = 168

 Score =  156 bits (397), Expect = 4e-49
 Identities = 53/175 (30%), Positives = 83/175 (47%), Gaps = 14/175 (8%)

Query: 5   RFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQ 64
              K + VG G VGK+ L + +  + F  DY PT  D++   VV++G  V + + DTAGQ
Sbjct: 3   ALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEEVQIDILDTAGQ 62

Query: 65  EDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHY--APGVPIILVGTKLDL 122
           EDY  +R   +R  + F+  FS+    S+      +  ++        VP +LVG K DL
Sbjct: 63  EDYAAIRDNYFRSGEGFLCVFSITEMESFAAT-ADFREQILRVKEDENVPFLLVGNKSDL 121

Query: 123 RDDKQFFIDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQQNVKAVFDAAIRVV 177
            D +Q          +S  + +          Y+E S+KT+ NV  VF   +R +
Sbjct: 122 EDKRQ----------VSVEEAKNRADQWNVN-YVETSAKTRANVDKVFFDLMREI 165

>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A* Length = 190

 Score =  156 bits (398), Expect = 4e-49
 Identities = 62/190 (32%), Positives = 94/190 (49%), Gaps = 17/190 (8%)

Query: 1   MSASRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWD 60
                  K V VG G VGK+ L I    N F  +Y PT+ D++   VV++G T  L + D
Sbjct: 16  FQGMTEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILD 75

Query: 61  TAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYA--PGVPIILVGT 118
           TAGQE+Y+ +R    R  + F+  F++ +  S+ ++   +  ++K       VP++LVG 
Sbjct: 76  TAGQEEYSAMRDQYMRTGEGFLCVFAINNSKSFADI-NLYREQIKRVKDSDDVPMVLVGN 134

Query: 119 KLDLRDDKQFFIDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQQNVKAVFDAAIRVVL 178
           K DL   +           + T Q  EL K  G P +IE S+KT+Q V+  F   +R + 
Sbjct: 135 KCDL-PTRT----------VDTKQAHELAKSYGIP-FIETSAKTRQGVEDAFYTLVREIR 182

Query: 179 QPPKTKKKKN 188
           Q     KK N
Sbjct: 183 Q--YRMKKLN 190

>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D* Length = 167

 Score =  155 bits (395), Expect = 8e-49
 Identities = 47/175 (26%), Positives = 86/175 (49%), Gaps = 15/175 (8%)

Query: 8   KCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQEDY 67
           K V +G G VGK+ L + +    F   Y PT+ D++   V V+     L + DTAG E +
Sbjct: 5   KLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDCQQCMLEILDTAGTEQF 64

Query: 68  NRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHY--APGVPIILVGTKLDLRDD 125
             +R L  +    F L +S+ +++++ ++ +    ++        VP+ILVG K DL D+
Sbjct: 65  TAMRDLYMKNGQGFALVYSITAQSTFNDL-QDLREQILRVKDTEDVPMILVGNKCDLEDE 123

Query: 126 KQFFIDHPGAVPISTAQGEEL-RKLIGAPAYIECSSKTQQNVKAVFDAAIRVVLQ 179
           +           +   QG+ L R+      ++E S+K++ NV  +F   +R + +
Sbjct: 124 RV----------VGKEQGQNLARQWCNCA-FLESSAKSKINVNEIFYDLVRQINR 167

>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ... Length = 166

 Score =  154 bits (392), Expect = 2e-48
 Identities = 57/174 (32%), Positives = 93/174 (53%), Gaps = 15/174 (8%)

Query: 8   KCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQEDY 67
           K V VG G VGK+ L I    N F  +  PT+ D++   VV++G T  L + DTAGQE+Y
Sbjct: 5   KLVVVGAGGVGKSALTIQLIQNHFVDECDPTIEDSYRKQVVIDGETCLLDILDTAGQEEY 64

Query: 68  NRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYA--PGVPIILVGTKLDLRDD 125
           + +R    R  + F+  F++ +  S+E++  ++  ++K       VP++LVG K DL   
Sbjct: 65  SAMRDQYMRTGEGFLCVFAINNTKSFEDI-HQYREQIKRVKDSDDVPMVLVGNKSDL-AA 122

Query: 126 KQFFIDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQQNVKAVFDAAIRVVLQ 179
           +           + + Q ++L +  G P YIE S+KT+Q V+  F   +R + Q
Sbjct: 123 RT----------VESRQAQDLARSYGIP-YIETSAKTRQGVEDAFYTLVREIRQ 165

>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A* Length = 183

 Score =  153 bits (390), Expect = 5e-48
 Identities = 56/175 (32%), Positives = 89/175 (50%), Gaps = 15/175 (8%)

Query: 8   KCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQEDY 67
           K V VGDG VGK+ L I +    F  DY PT+ D++  +  ++     L + DTAGQE++
Sbjct: 20  KLVVVGDGGVGKSALTIQFFQKIFVDDYDPTIEDSYLKHTEIDNQWAILDVLDTAGQEEF 79

Query: 68  NRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAP--GVPIILVGTKLDLRDD 125
           + +R    R  D F++ +S+  KAS+E+V  ++   +         P+ILV  K+DL   
Sbjct: 80  SAMREQYMRTGDGFLIVYSVTDKASFEHV-DRFHQLILRVKDRESFPMILVANKVDLMHL 138

Query: 126 KQFFIDHPGAVPISTAQGEELRKLIGAPAYIECSSKT-QQNVKAVFDAAIRVVLQ 179
           ++          ++  QG+E+      P YIE S+K    NV   F   +RV+ Q
Sbjct: 139 RK----------VTRDQGKEMATKYNIP-YIETSAKDPPLNVDKTFHDLVRVIRQ 182

>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8 Length = 196

 Score =  153 bits (389), Expect = 1e-47
 Identities = 51/194 (26%), Positives = 86/194 (44%), Gaps = 23/194 (11%)

Query: 1   MSASRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWD 60
           M+ S  +K    G   VGK+ L++ + +  F  +Y PT+   +     ++   V++ + D
Sbjct: 23  MAKSAEVKLAIFGRAGVGKSALVVRFLTKRFIWEYDPTLESTYRHQATIDDEVVSMEILD 82

Query: 61  TAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHY--APGVPIILVGT 118
           TAGQED    R    R  + F+L + +  + S+E V       L        V +ILVG 
Sbjct: 83  TAGQEDT-IQREGHMRWGEGFVLVYDITDRGSFEEV-LPLKNILDEIKKPKNVTLILVGN 140

Query: 119 KLDLRDDKQFFIDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQQ-NVKAVFDAAIRVV 177
           K DL   +Q          +ST +GE+L   +    + ECS+ T + N+  +F    R V
Sbjct: 141 KADLDHSRQ----------VSTEEGEKLATELACA-FYECSACTGEGNITEIFYELCREV 189

Query: 178 LQPPKTKKKKNKAQ 191
                  +++   Q
Sbjct: 190 -------RRRRMVQ 196

>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens} Length = 195

 Score =  151 bits (384), Expect = 7e-47
 Identities = 44/187 (23%), Positives = 84/187 (44%), Gaps = 20/187 (10%)

Query: 8   KCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVF-DNFSANVVVNGSTVNLGLWDTAGQED 66
           K + VG+  VGK+ L  ++      + + P    D +   ++V+   V L ++D   Q D
Sbjct: 25  KVMLVGESGVGKSTLAGTFGGLQGDSAHEPENPEDTYERRIMVDKEEVTLVVYDIWEQGD 84

Query: 67  Y-NRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELK--HYAPGVPIILVGTKLDLR 123
               LR    +  D F++ FS+  + S+  V  + +  L+       +P+ILVG K DL 
Sbjct: 85  AGGWLRDHCLQTGDAFLIVFSVTDRRSFSKV-PETLLRLRAGRPHHDLPVILVGNKSDLA 143

Query: 124 DDKQFFIDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQQNVKAVFDAAIRVVLQPPKT 183
             ++          +S  +G  L   +    +IE S+    N + +F+ A+R +    + 
Sbjct: 144 RSRE----------VSLEEGRHLAGTLSCK-HIETSAALHHNTRELFEGAVRQI----RL 188

Query: 184 KKKKNKA 190
           ++ +N A
Sbjct: 189 RRGRNHA 195

>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A* Length = 166

 Score =  150 bits (382), Expect = 7e-47
 Identities = 39/174 (22%), Positives = 72/174 (41%), Gaps = 15/174 (8%)

Query: 8   KCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQEDY 67
           K + +G   VGK+ L   +                +  ++VV+G   +L ++D   Q+  
Sbjct: 4   KVLLLGAPGVGKSALARIFG-GVEDGPEAEAAGHTYDRSIVVDGEEASLMVYDIWEQDGG 62

Query: 68  NRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHY--APGVPIILVGTKLDLRDD 125
             L        D +++ +S+  K S+E    +   +L+       VPIILVG K DL   
Sbjct: 63  RWLPGHCMAMGDAYVIVYSVTDKGSFEKA-SELRVQLRRARQTDDVPIILVGNKSDLVRS 121

Query: 126 KQFFIDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQQNVKAVFDAAIRVVLQ 179
           ++          +S  +G     +     +IE S+    NV+A+F+  +R +  
Sbjct: 122 RE----------VSVDEGRACAVVFDCK-FIETSAALHHNVQALFEGVVRQIRL 164

>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens} Length = 175

 Score =  148 bits (375), Expect = 9e-46
 Identities = 44/190 (23%), Positives = 81/190 (42%), Gaps = 21/190 (11%)

Query: 5   RFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQ 64
              + V +GD  VGKT L   +        +     D +   + V+G    L + DT   
Sbjct: 3   ALYRVVLLGDPGVGKTSLASLFAGKQERDLHEQLGEDVYERTLTVDGEDTTLVVVDTWEA 62

Query: 65  E--DYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELK--HYAPGVPIILVGTKL 120
           E  D +  +    +G   +++ +S+  + S+E+   +   +L+  H A  VPIILVG K 
Sbjct: 63  EKLDKSWSQESCLQGGSAYVIVYSIADRGSFESA-SELRIQLRRTHQADHVPIILVGNKA 121

Query: 121 DLRDDKQFFIDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQQNVKAVFDAAIRVVLQP 180
           DL   ++          +S  +G     +     +IE S+  Q NV  +F+  +R +   
Sbjct: 122 DLARCRE----------VSVEEGRACAVVFDCK-FIETSATLQHNVAELFEGVVRQLR-- 168

Query: 181 PKTKKKKNKA 190
               ++++ A
Sbjct: 169 ---LRRRDSA 175

>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} Length = 169

 Score =  147 bits (373), Expect = 2e-45
 Identities = 39/184 (21%), Positives = 79/184 (42%), Gaps = 22/184 (11%)

Query: 8   KCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNF-SANVVVNGSTVNLGLWDTAGQED 66
           K + VG+  VGK+ L  ++        +     ++     ++V+   V L ++D   Q D
Sbjct: 4   KVMLVGESGVGKSTLAGTFGGLQGDHAHEMENSEDTYERRIMVDKEEVTLIVYDIWEQGD 63

Query: 67  YN-RLRPLSYRGADVFILAFSLISKASYENVSKKWIPELK--HYAPGVPIILVGTKLDLR 123
               L+    +  D F++ FS+  + S+  V  + +  L+       +P+ILVG K DL 
Sbjct: 64  AGGWLQDHCLQTGDAFLIVFSVTDRRSFSKV-PETLLRLRAGRPHHDLPVILVGNKSDLA 122

Query: 124 DDKQFFIDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQQNVKAVFDAAIRVVLQPPKT 183
             ++          +S  +G  L   +    +IE S+    N + +F+ A+R +      
Sbjct: 123 RSRE----------VSLEEGRHLAGTLSCK-HIETSAALHHNTRELFEGAVRQI------ 165

Query: 184 KKKK 187
           + ++
Sbjct: 166 RLRR 169

>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens} Length = 187

 Score =  147 bits (373), Expect = 2e-45
 Identities = 41/179 (22%), Positives = 81/179 (45%), Gaps = 18/179 (10%)

Query: 2   SASRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWDT 61
                +    +G    GK+ L + + +  F ++Y P + D +S+   V+   V+L + DT
Sbjct: 17  QGPLEVNLAILGRRGAGKSALTVKFLTKRFISEYDPNLEDTYSSEETVDHQPVHLRVMDT 76

Query: 62  AGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYA----PGVPIILVG 117
           A  +   R        A  F++ +S+ S+ S+++    ++  L  +A      +P +L+G
Sbjct: 77  ADLDTP-RNCERYLNWAHAFLVVYSVDSRQSFDSS-SSYLELLALHAKETQRSIPALLLG 134

Query: 118 TKLDLRDDKQFFIDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQ-QNVKAVFDAAIR 175
            KLD+   +Q          ++ A+G  L    G   + E S+    ++V+ VF  A+R
Sbjct: 135 NKLDMAQYRQ----------VTKAEGVALAGRFGCL-FFEVSACLDFEHVQHVFHEAVR 182

>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A* Length = 168

 Score =  145 bits (369), Expect = 6e-45
 Identities = 58/174 (33%), Positives = 79/174 (45%), Gaps = 13/174 (7%)

Query: 7   IKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTV-FDNFSANVVVNGSTVNLGLWDTAGQE 65
           IK V VG+GAVGK+ ++  Y    F  DY  T+  D     + VN   V L LWDTAGQE
Sbjct: 6   IKMVVVGNGAVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIQVNDEDVRLMLWDTAGQE 65

Query: 66  DYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLRDD 125
           +++ +    YRGA   +L FS   + S+E +   W  ++      +P  LV  K+DL DD
Sbjct: 66  EFDAITKAYYRGAQACVLVFSTTDRESFEAI-SSWREKVVAEVGDIPTALVQNKIDLLDD 124

Query: 126 KQFFIDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQQNVKAVFDAAIRVVLQ 179
                       I   + E L K +    +   S K   NV  VF       LQ
Sbjct: 125 SC----------IKNEEAEGLAKRLKLR-FYRTSVKEDLNVSEVFKYLAEKHLQ 167

>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} Length = 184

 Score =  145 bits (368), Expect = 1e-44
 Identities = 38/175 (21%), Positives = 69/175 (39%), Gaps = 17/175 (9%)

Query: 7   IKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQED 66
           +K   VG+ + GK+ L+  Y + T+  +  P     F   +VV+G +  L + D  G  +
Sbjct: 21  LKVGIVGNLSSGKSALVHRYLTGTYVQEESPEG-GRFKKEIVVDGQSYLLLIRDEGGPPE 79

Query: 67  YNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPG--VPIILVGTKLDLRD 124
                       D  +  FSL  + S++ V   +   L  +     VP++LVGT+  +  
Sbjct: 80  LQ-----FAAWVDAVVFVFSLEDEISFQTV-YNYFLRLCSFRNASEVPMVLVGTQDAISA 133

Query: 125 DKQFFIDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQQNVKAVFDAAIRVVLQ 179
                        I  ++  +L   +    Y E  +    NV+ VF    + V+ 
Sbjct: 134 ANP--------RVIDDSRARKLSTDLKRCTYYETCATYGLNVERVFQDVAQKVVA 180

>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8 Length = 211

 Score =  145 bits (368), Expect = 2e-44
 Identities = 42/195 (21%), Positives = 88/195 (45%), Gaps = 27/195 (13%)

Query: 5   RFIKCVTVGDGAVGKTCLLISYTSN--TFPTDYVPTVFDNFSANVVVNGSTVNLGL---W 59
            + + V +G+  VGK+ L   +     +  +D      D +   ++V+G +  + L   W
Sbjct: 36  TYYRVVLIGEQGVGKSTLANIFAGVHDSMDSDCEVLGEDTYERTLMVDGESATIILLDMW 95

Query: 60  DTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELK--HYAPGVPIILVG 117
           +  G+ ++  L     +  D +++ +S+  +AS+E    +   +L+       +PIILVG
Sbjct: 96  ENKGENEW--LHDHCMQVGDAYLIVYSITDRASFEKA-SELRIQLRRARQTEDIPIILVG 152

Query: 118 TKLDLRDDKQFFIDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQQNVKAVFDAAIRVV 177
            K DL   ++          +S ++G     +     +IE S+  Q NVK +F+  +R V
Sbjct: 153 NKSDLVRCRE----------VSVSEGRACAVVFDCK-FIETSAAVQHNVKELFEGIVRQV 201

Query: 178 LQPPKTKKKKNKAQK 192
                 + +++  +K
Sbjct: 202 ------RLRRDSKEK 210

>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens} Length = 181

 Score =  144 bits (366), Expect = 3e-44
 Identities = 57/184 (30%), Positives = 86/184 (46%), Gaps = 13/184 (7%)

Query: 7   IKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTV-FDNFSANVVVNGSTVNLGLWDTAGQE 65
            K + +GD  VGK+ LL+ +  NTF   Y+ T+  D     V +NG  V L +WDTAGQE
Sbjct: 10  FKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGEKVKLQIWDTAGQE 69

Query: 66  DYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLRDD 125
            +  +    YRG    I+ + + S  S+ NV K+W+ E+      V  ILVG K D  + 
Sbjct: 70  RFRTITSTYYRGTHGVIVVYDVTSAESFVNV-KRWLHEINQNCDDVCRILVGNKNDDPER 128

Query: 126 KQFFIDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQQNVKAVFDAAIRVVLQPPKTKK 185
           K           + T    +    +G     E S+K   NV+ +F+    +VL+  K   
Sbjct: 129 KV----------VETEDAYKFAGQMGIQ-LFETSAKENVNVEEMFNCITELVLRAKKDNL 177

Query: 186 KKNK 189
            K +
Sbjct: 178 AKQQ 181

>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 1qg4_A* 3ea5_A* 1qg2_A* 1byu_A* 3ran_A* 3gjx_C* ... Length = 221

 Score =  144 bits (366), Expect = 7e-44
 Identities = 50/184 (27%), Positives = 78/184 (42%), Gaps = 15/184 (8%)

Query: 8   KCVTVGDGAVGKTCLLISYTSNTFPTDYVPTV-FDNFSANVVVNGSTVNLGLWDTAGQED 66
           K V VGDG  GKT  +  + +  F   YV T+  +        N   +   +WDTAGQE 
Sbjct: 17  KLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQEK 76

Query: 67  YNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLRDDK 126
           +  LR   Y  A   I+ F + S+ +Y+NV   W  +L      +PI+L G K+D++D K
Sbjct: 77  FGGLRDGYYIQAQCAIIMFDVTSRVTYKNV-PNWHRDLVRVCENIPIVLCGNKVDIKDRK 135

Query: 127 QFFIDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQQNVKAVFDAAIRVVLQPPKTKKK 186
                         A+     +      Y + S+K+  N +  F    R ++  P  +  
Sbjct: 136 V------------KAKSIVFHRKKNLQ-YYDISAKSNYNFEKPFLWLARKLIGDPNLEFV 182

Query: 187 KNKA 190
              A
Sbjct: 183 AMPA 186

>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A Length = 178

 Score =  143 bits (362), Expect = 9e-44
 Identities = 37/191 (19%), Positives = 74/191 (38%), Gaps = 23/191 (12%)

Query: 1   MSASRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWD 60
           M +   ++   +GD   GK+ L+  + + ++      T  + +   ++V+G T  + + +
Sbjct: 2   MRSIPELRLGVLGDARSGKSSLIHRFLTGSY-QVLEKTESEQYKKEMLVDGQTHLVLIRE 60

Query: 61  TAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAP----GVPIILV 116
            AG  D           AD  I  FSL  + S++ V  +   +L         G+ + LV
Sbjct: 61  EAGAPDA-----KFSGWADAVIFVFSLEDENSFQAV-SRLHGQLSSLRGEGRGGLALALV 114

Query: 117 GT--KLDLRDDKQFFIDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQQNVKAVFDAAI 174
           GT  ++     +           +  A+   L   +   +Y E  +    NV  VF    
Sbjct: 115 GTQDRISASSPRV----------VGDARARALXADMKRCSYYETXATYGLNVDRVFQEVA 164

Query: 175 RVVLQPPKTKK 185
           + V+   K ++
Sbjct: 165 QKVVTLRKQQQ 175

>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A* Length = 192

 Score =  142 bits (359), Expect = 3e-43
 Identities = 43/205 (20%), Positives = 89/205 (43%), Gaps = 25/205 (12%)

Query: 2   SASRFIKCVTVGDGAVGKTCLLISYTSN--TFPTDYVPTVFDNFSANVVVNGSTVNLGL- 58
               + + V +G+  VGK+ L   +     +  +D      D +   ++V+G +  + L 
Sbjct: 2   FGMTYYRVVLIGEQGVGKSTLANIFAGVHDSMDSDXEVLGEDTYERTLMVDGESATIILL 61

Query: 59  --WDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELK--HYAPGVPII 114
             W+  G+ ++  L     +  D +++ +S+  +AS+E    +   +L+       +PII
Sbjct: 62  DMWENKGENEW--LHDHCMQVGDAYLIVYSITDRASFEKA-SELRIQLRRARQTEDIPII 118

Query: 115 LVGTKLDLRDDKQFFIDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQQNVKAVFDAAI 174
           LVG K DL   ++          +S ++G     +     +IE S+  Q NVK +F+  +
Sbjct: 119 LVGNKSDLVRXRE----------VSVSEGRAXAVVFDXK-FIETSAAVQHNVKELFEGIV 167

Query: 175 RVV----LQPPKTKKKKNKAQKACS 195
           R V        K +++    ++  S
Sbjct: 168 RQVRLRRDSKEKNERRLAYQKRKES 192

>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens} Length = 201

 Score =  142 bits (359), Expect = 5e-43
 Identities = 50/175 (28%), Positives = 85/175 (48%), Gaps = 13/175 (7%)

Query: 7   IKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTV-FDNFSANVVVNGSTVNLGLWDTAGQE 65
            K V VGD +VGKTC++  + +  F      T+  D     + + G  V L +WDTAGQE
Sbjct: 30  FKLVLVGDASVGKTCVVQRFKTGAFSERQGSTIGVDFTMKTLEIQGKRVKLQIWDTAGQE 89

Query: 66  DYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYA-PGVPIILVGTKLDLRD 124
            +  +    YR A+  ILA+ +  ++S+ +V   WI +++ YA   +  +L+G K DL +
Sbjct: 90  RFRTITQSYYRSANGAILAYDITKRSSFLSV-PHWIEDVRKYAGSNIVQLLIGNKSDLSE 148

Query: 125 DKQFFIDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQQNVKAVFDAAIRVVLQ 179
            ++          +S A+ + L +       IE S+K   NV+  F      ++ 
Sbjct: 149 LRE----------VSLAEAQSLAEHYDILCAIETSAKDSSNVEEAFLRVATELIM 193

>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi} Length = 218

 Score =  142 bits (359), Expect = 6e-43
 Identities = 48/188 (25%), Positives = 79/188 (42%), Gaps = 15/188 (7%)

Query: 8   KCVTVGDGAVGKTCLLISYTSNTFPTDYVPT--VFDNFSANVVVNGSTVNLGLWDTAGQE 65
           K   +GDG VGKT  +       F  +Y  T    ++    +   G+ +   +WDTAGQE
Sbjct: 13  KICLIGDGGVGKTTYINRVLDGRFEKNYNATVGAVNHPVTFLDDQGNVIKFNVWDTAGQE 72

Query: 66  DYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYA-PGVPIILVGTKLDLRD 124
               L+ + Y GA   IL F + S+ + +N+  +W+ E +       PI++   K+D+++
Sbjct: 73  KKAVLKDVYYIGASGAILFFDVTSRITCQNL-ARWVKEFQAVVGNEAPIVVCANKIDIKN 131

Query: 125 DKQFFIDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQQNVKAVFDAAIRVVLQPPKTK 184
            ++          IS     E+ K      Y E S+KT  N    F    R+    P   
Sbjct: 132 RQK----------ISKKLVMEVLKGKNYE-YFEISAKTAHNFGLPFLHLARIFTGRPDLI 180

Query: 185 KKKNKAQK 192
              N   +
Sbjct: 181 FVSNVNLE 188

>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A* Length = 170

 Score =  139 bits (353), Expect = 2e-42
 Identities = 48/175 (27%), Positives = 91/175 (52%), Gaps = 14/175 (8%)

Query: 7   IKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTV-FDNFSANVVVNGSTVNLGLWDTAGQE 65
            K V +G+G VGKT L++ Y  N F   ++ T+     +  + + G  VNL +WDTAGQE
Sbjct: 7   FKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLGASFLTKKLNIGGKRVNLAIWDTAGQE 66

Query: 66  DYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYA-PGVPIILVGTKLDLRD 124
            ++ L P+ YR ++  IL + +  + S++ V K W+ EL+      + + +VG K+DL  
Sbjct: 67  RFHALGPIYYRDSNGAILVYDITDEDSFQKV-KNWVKELRKMLGNEICLCIVGNKIDLEK 125

Query: 125 DKQFFIDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQQNVKAVFDAAIRVVLQ 179
           ++           +S  + E   + +GA  +   S+K  + ++ +F    + +++
Sbjct: 126 ERH----------VSIQEAESYAESVGAK-HYHTSAKQNKGIEELFLDLCKRMIE 169

>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B* Length = 181

 Score =  139 bits (352), Expect = 4e-42
 Identities = 58/184 (31%), Positives = 93/184 (50%), Gaps = 17/184 (9%)

Query: 7   IKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTV-FDNFSANVVVNGSTVNLGLWDTAGQE 65
            K V +GD   GK+ L++ +  + F      T+    FS  + VN +TV   +WDTAGQE
Sbjct: 13  AKLVLLGDVGAGKSSLVLRFVKDQFVEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQE 72

Query: 66  DYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYA-PGVPIILVGTKLDLRD 124
            Y+ L P+ YRGA   I+ F + ++AS+E   KKW+ EL+    P + + L G K DL D
Sbjct: 73  RYHSLAPMYYRGAAAAIIVFDVTNQASFERA-KKWVQELQAQGNPNMVMALAGNKSDLLD 131

Query: 125 DKQFFIDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQQNVKAVFDAAIRVVLQPPKTK 184
            ++          ++    +   +  G   ++E S+KT  NVK +F    R +   P+ +
Sbjct: 132 ARK----------VTAEDAQTYAQENGLF-FMETSAKTATNVKEIFYEIARRL---PRVQ 177

Query: 185 KKKN 188
             +N
Sbjct: 178 PTEN 181

>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A* Length = 189

 Score =  138 bits (351), Expect = 5e-42
 Identities = 54/175 (30%), Positives = 87/175 (49%), Gaps = 14/175 (8%)

Query: 7   IKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSA-NVVVNGSTVNLGLWDTAGQE 65
            K + +G+ +VGKT  L  Y  ++F   +V TV  +F    V  +   + L +WDTAGQE
Sbjct: 23  FKLLLIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTVYRHDKRIKLQIWDTAGQE 82

Query: 66  DYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYA-PGVPIILVGTKLDLRD 124
            Y  +    YRGA  F+L + + ++ S+  V + W  ++K Y+     +ILVG K DL D
Sbjct: 83  RYRTITTAYYRGAMGFLLMYDIANQESFAAV-QDWATQIKTYSWDNAQVILVGNKCDLED 141

Query: 125 DKQFFIDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQQNVKAVFDAAIRVVLQ 179
           ++           +    G  L   +G   + E S+K   NVK VF+  + V+ +
Sbjct: 142 ERV----------VPAEDGRRLADDLGFE-FFEASAKENINVKQVFERLVDVICE 185

>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A* Length = 177

 Score =  138 bits (349), Expect = 7e-42
 Identities = 59/186 (31%), Positives = 96/186 (51%), Gaps = 19/186 (10%)

Query: 1   MSASRFI-KCVTVGDGAVGKTCLLISYTSNTFPTDYVPTV-FDNFSANVVVNGSTVNLGL 58
           M+    + K + +GDG VGK+ L+  Y +N F T    T+  +  + ++ V+G  V + +
Sbjct: 1   MAGKSSLFKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTMQI 60

Query: 59  WDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYA-----PGVPI 113
           WDTAGQE +  LR   YRG+D  +L FS+    S++N+   W  E  +YA        P 
Sbjct: 61  WDTAGQERFRSLRTPFYRGSDCCLLTFSVDDSQSFQNL-SNWKKEFIYYADVKEPESFPF 119

Query: 114 ILVGTKLDLRDDKQFFIDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQQNVKAVFDAA 173
           +++G K+D+  ++Q          +ST + +   +  G   Y E S+K   NV A F+ A
Sbjct: 120 VILGNKIDI-SERQ----------VSTEEAQAWCRDNGDYPYFETSAKDATNVAAAFEEA 168

Query: 174 IRVVLQ 179
           +R VL 
Sbjct: 169 VRRVLA 174

>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens} Length = 199

 Score =  138 bits (351), Expect = 7e-42
 Identities = 54/181 (29%), Positives = 85/181 (46%), Gaps = 8/181 (4%)

Query: 1   MSASRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTV-FDNFSANVVVNGSTVNLGLW 59
            S+ +  K V  GD AVGK+  L+    N F  +   T+  D     ++V+G    L LW
Sbjct: 23  FSSQKAYKIVLAGDAAVGKSSFLMRLCKNEFRENISATLGVDFQMKTLIVDGERTVLQLW 82

Query: 60  DTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYA-PGVPIILVGT 118
           DTAGQE +  +    +R AD  +L + +  + S+ N+ ++W+  ++  A   VPI+LVG 
Sbjct: 83  DTAGQERFRSIAKSYFRKADGVLLLYDVTCEKSFLNI-REWVDMIEDAAHETVPIMLVGN 141

Query: 119 KLDLRDDKQFFIDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQQNVKAVFDAAIRVVL 178
           K D+RD             +    GE+L    GA  + E S+K   N+        R V 
Sbjct: 142 KADIRDTAATEGQK----CVPGHFGEKLAMTYGAL-FCETSAKDGSNIVEAVLHLAREVK 196

Query: 179 Q 179
           +
Sbjct: 197 K 197

>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A* Length = 183

 Score =  138 bits (349), Expect = 9e-42
 Identities = 51/186 (27%), Positives = 94/186 (50%), Gaps = 14/186 (7%)

Query: 7   IKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSA-NVVVNGSTVNLGLWDTAGQE 65
            K + +GD  VGKTC+L  ++ + F + ++ T+  +F    + ++G  + L +WDTAGQE
Sbjct: 9   FKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQE 68

Query: 66  DYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYA-PGVPIILVGTKLDLRD 124
            +  +    YRGA   +L + + ++ S++N+ + WI  ++ +A   V  +++G K D+ D
Sbjct: 69  RFRTITTAYYRGAMGIMLVYDITNEKSFDNI-RNWIRNIEEHASADVEKMILGNKCDVND 127

Query: 125 DKQFFIDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQQNVKAVFDAAIRVVLQPPKTK 184
            +Q          +S  +GE+L    G   ++E S+K   NV+  F    R +       
Sbjct: 128 KRQ----------VSKERGEKLALDYGIK-FMETSAKANINVENAFFTLARDIKAKMDKN 176

Query: 185 KKKNKA 190
            K   A
Sbjct: 177 WKATAA 182

>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens} Length = 199

 Score =  138 bits (350), Expect = 9e-42
 Identities = 53/175 (30%), Positives = 87/175 (49%), Gaps = 14/175 (8%)

Query: 7   IKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTV-FDNFSANVVVNGSTVNLGLWDTAGQE 65
            K + +GD  VGK+CLL+ +  +T+   Y+ T+  D     + ++G T+ L +WDTAGQE
Sbjct: 34  FKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQE 93

Query: 66  DYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYA-PGVPIILVGTKLDLRD 124
            +  +    YRGA   I+ + +  + S+ NV K+W+ E+  YA   V  +LVG K DL  
Sbjct: 94  RFRTITSSYYRGAHGIIVVYDVTDQESFNNV-KQWLQEIDRYASENVNKLLVGNKCDLTT 152

Query: 125 DKQFFIDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQQNVKAVFDAAIRVVLQ 179
            K           +     +E    +G P ++E S+K   NV+  F      + +
Sbjct: 153 KKV----------VDYTTAKEFADSLGIP-FLETSAKNATNVEQSFMTMAAEIKK 196

>3bbp_A RAB-6, RAS-related protein RAB-6A; golgi complex, GRIP domain, RAB GTPase, ARL GTPase, golgin, RAB effector, clAsp protein; HET: GTP; 3.00A {Homo sapiens} Length = 211

 Score =  138 bits (351), Expect = 9e-42
 Identities = 54/187 (28%), Positives = 88/187 (47%), Gaps = 14/187 (7%)

Query: 7   IKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTV-FDNFSANVVVNGSTVNLGLWDTAGQE 65
            K V +G+ +VGKT L+  +  ++F   Y  T+  D  S  + +   TV L LWDTAG E
Sbjct: 17  FKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGLE 76

Query: 66  DYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYA-PGVPIILVGTKLDLRD 124
            +  L P   R + V ++ + + +  S++    KWI +++      V I+LVG K DL D
Sbjct: 77  RFRSLIPSYIRDSTVAVVVYDITNVNSFQQT-TKWIDDVRTERGSDVIIMLVGNKTDLAD 135

Query: 125 DKQFFIDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQQNVKAVFDAAIRVVLQPPKTK 184
            +Q          +S  +GE   K +    +IE S+K   NVK +F      +     T+
Sbjct: 136 KRQ----------VSIEEGERKAKELNVM-FIETSAKAGYNVKQLFRRVAAALPGMESTQ 184

Query: 185 KKKNKAQ 191
            +  +  
Sbjct: 185 DRSREDM 191

>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8 Length = 201

 Score =  138 bits (350), Expect = 1e-41
 Identities = 53/175 (30%), Positives = 86/175 (49%), Gaps = 14/175 (8%)

Query: 7   IKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTV-FDNFSANVVVNGSTVNLGLWDTAGQE 65
            K V +G+  VGKTCL+  +T   FP     T+  D     V +NG  V L +WDTAGQE
Sbjct: 27  FKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEINGEKVKLQIWDTAGQE 86

Query: 66  DYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYA-PGVPIILVGTKLDLRD 124
            +  +    YR A+  IL + +  + S+  +  +W+ E++ YA   V  +LVG K+DL +
Sbjct: 87  RFRSITQSYYRSANALILTYDITCEESFRCL-PEWLREIEQYASNKVITVLVGNKIDLAE 145

Query: 125 DKQFFIDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQQNVKAVFDAAIRVVLQ 179
            ++          +S  + EE  +      Y+E S+K   NV+ +F      ++ 
Sbjct: 146 RRE----------VSQQRAEEFSEAQDMY-YLETSAKESDNVEKLFLDLACRLIS 189

>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8 Length = 192

 Score =  138 bits (349), Expect = 1e-41
 Identities = 49/189 (25%), Positives = 88/189 (46%), Gaps = 17/189 (8%)

Query: 2   SASRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTV-FDNFSANVVVNGSTVNLGLWD 60
           SA R +K   +GD  VGK+ ++  +  + F  +  PT+     +  V          +WD
Sbjct: 19  SAIRELKVCLLGDTGVGKSSIVCRFVQDHFDHNISPTIGASFMTKTVPCGNELHKFLIWD 78

Query: 61  TAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYA-PGVPIILVGTK 119
           TAGQE ++ L P+ YRG+   ++ + +  + S+  + KKW+ ELK +    + + + G K
Sbjct: 79  TAGQERFHSLAPMYYRGSAAAVIVYDITKQDSFYTL-KKWVKELKEHGPENIVMAIAGNK 137

Query: 120 LDLRDDKQFFIDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQQNVKAVFDAAIRVVLQ 179
            DL D ++          +     +E  + IGA   +E S+K   N++ +F    R +  
Sbjct: 138 CDLSDIRE----------VPLKDAKEYAESIGAI-VVETSAKNAINIEELFQGISRQI-- 184

Query: 180 PPKTKKKKN 188
            P     +N
Sbjct: 185 -PPLDPHEN 192

>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A* Length = 182

 Score =  137 bits (348), Expect = 1e-41
 Identities = 56/188 (29%), Positives = 90/188 (47%), Gaps = 19/188 (10%)

Query: 1   MSASR--FIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTV-FDNFSANVVVNGS-TVNL 56
           MS+ +   +K + +GD  VGKT L+  Y ++ +   Y  T+  D  +  V V+G     +
Sbjct: 1   MSSRKKNILKVIILGDSGVGKTSLMHRYVNDKYSQQYKATIGADFLTKEVTVDGDKVATM 60

Query: 57  GLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYA-----PGV 111
            +WDTAGQE +  L    YRGAD  +L + + + +S+EN+ K W  E   +A        
Sbjct: 61  QVWDTAGQERFQSLGVAFYRGADCCVLVYDVTNASSFENI-KSWRDEFLVHANVNSPETF 119

Query: 112 PIILVGTKLDLRDDKQFFIDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQQNVKAVFD 171
           P +++G K+D  + K+          +S    +EL K +G       S+K   NV   F+
Sbjct: 120 PFVILGNKIDAEESKK---------IVSEKSAQELAKSLGDIPLFLTSAKNAINVDTAFE 170

Query: 172 AAIRVVLQ 179
              R  LQ
Sbjct: 171 EIARSALQ 178

>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A* Length = 179

 Score =  137 bits (348), Expect = 1e-41
 Identities = 58/178 (32%), Positives = 88/178 (49%), Gaps = 20/178 (11%)

Query: 1   MSASRF------IKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTV-FDNFSANVVVNGST 53
           MS+  F       K V +G+ +VGKT L+  +  ++F   Y  T+  D  S  + +   T
Sbjct: 3   MSSGDFGNPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRT 62

Query: 54  VNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYA-PGVP 112
           V L LWDTAGQE +  L P   R + V ++ + + +  S+     KWI +++      V 
Sbjct: 63  VRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNTNSFHQT-SKWIDDVRTERGSDVI 121

Query: 113 IILVGTKLDLRDDKQFFIDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQQNVKAVF 170
           I+LVG K DL D +Q          +ST +GE   K +    +IE S+K   NVK +F
Sbjct: 122 IMLVGNKTDLSDKRQ----------VSTEEGERKAKELNVM-FIETSAKAGYNVKQLF 168

>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} Length = 191

 Score =  137 bits (348), Expect = 2e-41
 Identities = 52/175 (29%), Positives = 88/175 (50%), Gaps = 14/175 (8%)

Query: 7   IKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSA-NVVVNGSTVNLGLWDTAGQE 65
            K + +G+ +VGKT  L  Y  +TF   +V TV  +F    V  +   V L +WDTAGQE
Sbjct: 24  FKLLIIGNSSVGKTSFLFRYADDTFTPAFVSTVGIDFKVKTVYRHEKRVKLQIWDTAGQE 83

Query: 66  DYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYA-PGVPIILVGTKLDLRD 124
            Y  +    YRGA  FIL + + ++ S+  V + W  ++K Y+     +ILVG K D+ +
Sbjct: 84  RYRTITTAYYRGAMGFILMYDITNEESFNAV-QDWATQIKTYSWDNAQVILVGNKCDMEE 142

Query: 125 DKQFFIDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQQNVKAVFDAAIRVVLQ 179
           ++           + T +G+ L + +G   + E S+K   +V+  F+  +  +  
Sbjct: 143 ERV----------VPTEKGQLLAEQLGFD-FFEASAKENISVRQAFERLVDAICD 186

>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8 Length = 203

 Score =  138 bits (349), Expect = 2e-41
 Identities = 52/189 (27%), Positives = 89/189 (47%), Gaps = 14/189 (7%)

Query: 7   IKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSA-NVVVNGSTVNLGLWDTAGQE 65
            K + +G+ +VGKT  L  Y  ++F   +V TV  +F    +  N   + L +WDTAG E
Sbjct: 9   FKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDTAGLE 68

Query: 66  DYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYA-PGVPIILVGTKLDLRD 124
            Y  +    YRGA  FIL + + ++ S+  V + W  ++K Y+     ++LVG K D+ D
Sbjct: 69  RYRTITTAYYRGAMGFILMYDITNEESFNAV-QDWSTQIKTYSWDNAQVLLVGNKCDMED 127

Query: 125 DKQFFIDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQQNVKAVFDAAIRVVLQPPKTK 184
           ++           +S+ +G +L   +G   + E S+K   NVK  F+  + V+ +     
Sbjct: 128 ERV----------VSSERGRQLADHLGFE-FFEASAKDNINVKQTFERLVDVICEKMSES 176

Query: 185 KKKNKAQKA 193
                    
Sbjct: 177 LDTADPAVT 185

>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens} Length = 193

 Score =  137 bits (347), Expect = 2e-41
 Identities = 51/182 (28%), Positives = 85/182 (46%), Gaps = 16/182 (8%)

Query: 7   IKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTV-FDNFSANVVVNGSTVNLGLWDTAGQE 65
            K V +G+  VGKT LL  +T N F  D   T+  +  +  V++  + V   +WDTAG E
Sbjct: 26  FKVVLIGESGVGKTNLLSRFTRNEFSHDSRTTIGVEFSTRTVMLGTAAVKAQIWDTAGLE 85

Query: 66  DYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYA-PGVPIILVGTKLDLRD 124
            Y  +    YRGA   +L F L    +Y  V ++W+ EL  +A   + ++LVG K DL  
Sbjct: 86  RYRAITSAYYRGAVGALLVFDLTKHQTYAVV-ERWLKELYDHAEATIVVMLVGNKSDLSQ 144

Query: 125 DKQFFIDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQQNVKAVFDAAIRVVLQPPKTK 184
            ++          + T +     +  G   ++E S+    NV+  F+  ++ +    K  
Sbjct: 145 ARE----------VPTEEARMFAENNGLL-FLETSALDSTNVELAFETVLKEIFA--KVS 191

Query: 185 KK 186
           K+
Sbjct: 192 KQ 193

>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A* Length = 191

 Score =  137 bits (347), Expect = 2e-41
 Identities = 44/175 (25%), Positives = 86/175 (49%), Gaps = 14/175 (8%)

Query: 7   IKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTV-FDNFSANVVVNGSTVNLGLWDTAGQE 65
            K + +GD  VGK+CLL+ +T   F   +  T+  +  +  V ++G  + L +WDTAGQE
Sbjct: 22  FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVNIDGKQIKLQIWDTAGQE 81

Query: 66  DYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYA-PGVPIILVGTKLDLRD 124
            +  +    YRGA   +L + +  + ++ ++   W+ + + ++   + I+L+G K DL  
Sbjct: 82  SFRSITRSYYRGAAGALLVYDITRRETFNHL-TSWLEDARQHSSSNMVIMLIGNKSDLES 140

Query: 125 DKQFFIDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQQNVKAVFDAAIRVVLQ 179
            +           +   +GE   +  G   ++E S+KT  NV+  F    + + +
Sbjct: 141 RRD----------VKREEGEAFAREHGLI-FMETSAKTACNVEEAFINTAKEIYR 184

>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens} Length = 196

 Score =  137 bits (347), Expect = 2e-41
 Identities = 55/189 (29%), Positives = 91/189 (48%), Gaps = 14/189 (7%)

Query: 7   IKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTV-FDNFSANVVVNGSTVNLGLWDTAGQE 65
            K + +GD  VGK+CLL+ +  +T+   Y+ T+  D     + ++G T+ L +WDTAGQE
Sbjct: 17  FKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQE 76

Query: 66  DYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYA-PGVPIILVGTKLDLRD 124
            +  +    YRGA   I+ + +  + S+ NV K+W+ E+  YA   V  +LVG K DL  
Sbjct: 77  RFRTITSSYYRGAHGIIVVYDVTDQESFNNV-KQWLQEIDRYASENVNKLLVGNKCDLTT 135

Query: 125 DKQFFIDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQQNVKAVFDAAIRVVLQPPKTK 184
            K           +     +E    +G P ++E S+K   NV+  F      + +     
Sbjct: 136 KKV----------VDYTTAKEFADSLGIP-FLETSAKNATNVEQSFMTMAAEIKKRMGPG 184

Query: 185 KKKNKAQKA 193
                A+K+
Sbjct: 185 ATAGGAEKS 193

>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A* Length = 170

 Score =  136 bits (345), Expect = 3e-41
 Identities = 49/174 (28%), Positives = 84/174 (48%), Gaps = 14/174 (8%)

Query: 8   KCVTVGDGAVGKTCLLISYTSNTFPTDYVPTV-FDNFSANVVVNGSTVNLGLWDTAGQED 66
           K V +G+ AVGK+ L++ +    F      T+     +  V ++ +TV   +WDTAGQE 
Sbjct: 8   KLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQER 67

Query: 67  YNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYA-PGVPIILVGTKLDLRDD 125
           Y+ L P+ YRGA   I+ + + ++ S+    K W+ EL+  A P + I L G K DL + 
Sbjct: 68  YHSLAPMYYRGAQAAIVVYDITNEESFARA-KNWVKELQRQASPNIVIALSGNKADLANK 126

Query: 126 KQFFIDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQQNVKAVFDAAIRVVLQ 179
           +           +   + +          ++E S+KT  NV  +F A  + + +
Sbjct: 127 RA----------VDFQEAQSYADDNSLL-FMETSAKTSMNVNEIFMAIAKKLPK 169

>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A* Length = 206

 Score =  137 bits (347), Expect = 3e-41
 Identities = 54/189 (28%), Positives = 91/189 (48%), Gaps = 14/189 (7%)

Query: 7   IKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSA-NVVVNGSTVNLGLWDTAGQE 65
            K + +G+  VGK+CLL+ ++ +T+  DY+ T+  +F    V ++G TV L +WDTAGQE
Sbjct: 9   FKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWDTAGQE 68

Query: 66  DYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYA-PGVPIILVGTKLDLRD 124
            +  +    YRG+   I+ + +  + S+  V K W+ E+  YA   V  +LVG K DL+D
Sbjct: 69  RFRTITSSYYRGSHGIIIVYDVTDQESFNGV-KMWLQEIDRYATSTVLKLLVGNKCDLKD 127

Query: 125 DKQFFIDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQQNVKAVFDAAIRVVLQPPKTK 184
            +           +     +E       P ++E S+    NV+  F    R + +    +
Sbjct: 128 KRV----------VEYDVAKEFADANKMP-FLETSALDSTNVEDAFLTMARQIKESMSQQ 176

Query: 185 KKKNKAQKA 193
                 QK 
Sbjct: 177 NLNETTQKK 185

>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A* Length = 179

 Score =  136 bits (344), Expect = 4e-41
 Identities = 47/174 (27%), Positives = 88/174 (50%), Gaps = 14/174 (8%)

Query: 8   KCVTVGDGAVGKTCLLISYTSNTFPTDYVPTV-FDNFSANVVVNGSTVNLGLWDTAGQED 66
           K + +GD  VGK+CLL  +T   F  D   T+  +  +  + V+G  + L +WDTAGQE 
Sbjct: 17  KYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQER 76

Query: 67  YNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYA-PGVPIILVGTKLDLRDD 125
           +  +    YRGA   ++ + +  +++Y ++   W+ + ++   P   IIL+G K DL   
Sbjct: 77  FRAVTRSYYRGAAGALMVYDITRRSTYNHL-SSWLTDARNLTNPNTVIILIGNKADLEAQ 135

Query: 126 KQFFIDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQQNVKAVFDAAIRVVLQ 179
           +           ++  + ++  +  G   ++E S+KT +NV+  F  A + + Q
Sbjct: 136 RD----------VTYEEAKQFAEENGLL-FLEASAKTGENVEDAFLEAAKKIYQ 178

>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens} Length = 192

 Score =  136 bits (345), Expect = 5e-41
 Identities = 52/175 (29%), Positives = 87/175 (49%), Gaps = 13/175 (7%)

Query: 7   IKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSA-NVVVNGSTVNLGLWDTAGQE 65
           ++ + +G   VGKT L+  +T +TF      TV  +F    V + G  + L +WDTAGQE
Sbjct: 27  LQVIIIGSRGVGKTSLMERFTDDTFCEACKSTVGVDFKIKTVELRGKKIRLQIWDTAGQE 86

Query: 66  DYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYA-PGVPIILVGTKLDLRD 124
            +N +    YR A   IL + +  K +++++  KW+  +  YA     ++LVG KLD   
Sbjct: 87  RFNSITSAYYRSAKGIILVYDITKKETFDDL-PKWMKMIDKYASEDAELLLVGNKLDCET 145

Query: 125 DKQFFIDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQQNVKAVFDAAIRVVLQ 179
           D++          I+  QGE+  + I    + E S+K   NV  +F   +  +L+
Sbjct: 146 DRE----------ITRQQGEKFAQQITGMRFCEASAKDNFNVDEIFLKLVDDILK 190

>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A* Length = 186

 Score =  135 bits (343), Expect = 7e-41
 Identities = 47/174 (27%), Positives = 80/174 (45%), Gaps = 14/174 (8%)

Query: 8   KCVTVGDGAVGKTCLLISYTSNTFPTDYVPTV-FDNFSANVVVNGSTVNLGLWDTAGQED 66
           K + +G+   GK+CLL  +    F  D   T+  +  S  + V G  V L +WDTAGQE 
Sbjct: 12  KFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGQER 71

Query: 67  YNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYA-PGVPIILVGTKLDLRDD 125
           +  +    YRGA   +L + + S+ +Y  +   W+ + +  A   + IIL G K DL  D
Sbjct: 72  FRSVTRSYYRGAAGALLVYDITSRETYNAL-TNWLTDARMLASQNIVIILCGNKKDLDAD 130

Query: 126 KQFFIDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQQNVKAVFDAAIRVVLQ 179
           ++          ++  +     +      ++E S+ T +NV+  F    R +L 
Sbjct: 131 RE----------VTFLEASRFAQENELM-FLETSALTGENVEEAFVQCARKILN 173

>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens} Length = 200

 Score =  136 bits (344), Expect = 8e-41
 Identities = 49/174 (28%), Positives = 83/174 (47%), Gaps = 14/174 (8%)

Query: 8   KCVTVGDGAVGKTCLLISYTSNTFPTDYVPTV-FDNFSANVVVNGSTVNLGLWDTAGQED 66
           K + +G    GK+CLL  +  N F  D   T+  +  S  V V G TV L +WDTAGQE 
Sbjct: 27  KFLVIGSAGTGKSCLLHQFIENKFKQDSNHTIGVEFGSRVVNVGGKTVKLQIWDTAGQER 86

Query: 67  YNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYA-PGVPIILVGTKLDLRDD 125
           +  +    YRGA   +L + + S+ +Y ++   W+ + +  A P + +IL G K DL  +
Sbjct: 87  FRSVTRSYYRGAAGALLVYDITSRETYNSL-AAWLTDARTLASPNIVVILCGNKKDLDPE 145

Query: 126 KQFFIDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQQNVKAVFDAAIRVVLQ 179
           ++          ++  +     +      ++E S+ T +NV+  F    R +L 
Sbjct: 146 RE----------VTFLEASRFAQENELM-FLETSALTGENVEEAFLKCARTILN 188

>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A* Length = 199

 Score =  136 bits (344), Expect = 8e-41
 Identities = 56/190 (29%), Positives = 93/190 (48%), Gaps = 14/190 (7%)

Query: 8   KCVTVGDGAVGKTCLLISYTSNTFPTDYVPTV-FDNFSANVVVNGSTVNLGLWDTAGQED 66
           K V +GD  VGK+ LL  +T N F  +   T+  +  + ++ V+G T+   +WDTAGQE 
Sbjct: 7   KVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQER 66

Query: 67  YNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYA-PGVPIILVGTKLDLRDD 125
           Y R+    YRGA   +L + +    +YENV ++W+ EL+ +A   + I+LVG K DLR  
Sbjct: 67  YRRITSAYYRGAVGALLVYDIAKHLTYENV-ERWLKELRDHADSNIVIMLVGNKSDLRHL 125

Query: 126 KQFFIDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQQNVKAVFDAAIRVVLQPPKTKK 185
           +           + T +     +      +IE S+    NV+  F   +  + +    K+
Sbjct: 126 RA----------VPTDEARAFAEKNNLS-FIETSALDSTNVEEAFKNILTEIYRIVSQKQ 174

Query: 186 KKNKAQKACS 195
             ++A    S
Sbjct: 175 IADRAAHDES 184

>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A* Length = 195

 Score =  135 bits (343), Expect = 1e-40
 Identities = 55/197 (27%), Positives = 91/197 (46%), Gaps = 27/197 (13%)

Query: 7   IKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTV-----------FDNFSANVVVNGSTVN 55
           IK + +GD  VGKT +L  YT   F + ++ TV             N     V  G  ++
Sbjct: 12  IKFLALGDSGVGKTSVLYQYTDGKFNSKFITTVGIDFREKRVVYRANGPDGAVGRGQRIH 71

Query: 56  LGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYA--PGVPI 113
           L LWDTAG E +  L    +R A  F+L F L ++ S+ NV + WI +L+ +A      I
Sbjct: 72  LQLWDTAGLERFRSLTTAFFRDAMGFLLLFDLTNEQSFLNV-RNWISQLQMHAYSENPDI 130

Query: 114 ILVGTKLDLRDDKQFFIDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQQNVKAVFDAA 173
           +L G K DL D +           +   +  EL +  G P Y E S+    N+    +  
Sbjct: 131 VLCGNKSDLEDQRA----------VKEEEARELAEKYGIP-YFETSAANGTNISHAIEML 179

Query: 174 IRVVLQPPKTKKKKNKA 190
           + ++++  + ++  +K+
Sbjct: 180 LDLIMK--RMERSVDKS 194

>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B* Length = 191

 Score =  135 bits (341), Expect = 2e-40
 Identities = 53/170 (31%), Positives = 85/170 (50%), Gaps = 14/170 (8%)

Query: 8   KCVTVGDGAVGKTCLLISYTSNTFPTDYVPTV-FDNFSANVVVNGSTVNLGLWDTAGQED 66
           K V +GD  VGK+ LL  +T N F  +   T+  +  + ++ V+G T+   +WDTAG E 
Sbjct: 31  KVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGLER 90

Query: 67  YNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYA-PGVPIILVGTKLDLRDD 125
           Y  +    YRGA   +L + +    +YENV ++W+ EL+ +A   + I+LVG K DLR  
Sbjct: 91  YRAITSAYYRGAVGALLVYDIAKHLTYENV-ERWLKELRDHADSNIVIMLVGNKSDLRHL 149

Query: 126 KQFFIDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQQNVKAVFDAAIR 175
           +           + T +     +  G   +IE S+    NV+A F   + 
Sbjct: 150 RA----------VPTDEARAFAEKNGLS-FIETSALDSTNVEAAFQTILT 188

>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A* Length = 170

 Score =  133 bits (338), Expect = 3e-40
 Identities = 43/180 (23%), Positives = 82/180 (45%), Gaps = 14/180 (7%)

Query: 2   SASRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTV-FDNFSANVVVNGSTVNLGLWD 60
           SA R +K   +GD  VGK+ ++  +  ++F  +  PT+     +  V          +WD
Sbjct: 2   SALRELKVCLLGDTGVGKSSIMWRFVEDSFDPNINPTIGASFMTKTVQYQNELHKFLIWD 61

Query: 61  TAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYA-PGVPIILVGTK 119
           TAG E +  L P+ YRG+   I+ + +  + ++  + K W+ EL+ +  P + + + G K
Sbjct: 62  TAGLERFRALAPMYYRGSAAAIIVYDITKEETFSTL-KNWVRELRQHGPPSIVVAIAGNK 120

Query: 120 LDLRDDKQFFIDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQQNVKAVFDAAIRVVLQ 179
            DL D ++          +     ++    I A  ++E S+K   N+  +F    R +  
Sbjct: 121 CDLTDVRE----------VMERDAKDYADSIHAI-FVETSAKNAININELFIEISRRIPS 169

>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8 Length = 195

 Score =  134 bits (340), Expect = 3e-40
 Identities = 50/188 (26%), Positives = 94/188 (50%), Gaps = 16/188 (8%)

Query: 7   IKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTV-FDNFSANVVVNGSTVNLGLWDTAGQE 65
           +K + +G+  VGK+ LL+ +T +TF  +   T+  D     + V+G+   L +WDTAGQE
Sbjct: 16  LKILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNKAKLAIWDTAGQE 75

Query: 66  DYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYA--PGVPIILVGTKLDLR 123
            +  L P  YRGA   IL + +  + ++  +   W+ EL+ Y     +  +LVG K+D  
Sbjct: 76  RFRTLTPSYYRGAQGVILVYDVTRRDTFVKL-DNWLNELETYCTRNDIVNMLVGNKIDK- 133

Query: 124 DDKQFFIDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQQNVKAVFDAAIRVVLQPPKT 183
           ++++          +   +G +  +      +IE S+KT   V+  F+  +  ++Q P  
Sbjct: 134 ENRE----------VDRNEGLKFARKHSML-FIEASAKTCDGVQCAFEELVEKIIQTPGL 182

Query: 184 KKKKNKAQ 191
            + +N+  
Sbjct: 183 WESENQNS 190

>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae} Length = 223

 Score =  135 bits (341), Expect = 4e-40
 Identities = 50/188 (26%), Positives = 81/188 (43%), Gaps = 14/188 (7%)

Query: 8   KCVTVGDGAVGKTCLLISYTSNTFPTDYVPTV-FDNFSANVVVNGSTVNLGLWDTAGQED 66
           K V +GD  VGK+ LL  +T N F  D   T+  +  +  + + G  +   +WDTAGQE 
Sbjct: 15  KIVLIGDSGVGKSNLLSRFTKNEFNMDSKSTIGVEFATRTLEIEGKRIKAQIWDTAGQER 74

Query: 67  YNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYA-PGVPIILVGTKLDLRDD 125
           Y  +    YRGA   ++ + +   +SYEN    W+ EL+  A   V + L+G K DL   
Sbjct: 75  YRAITSAYYRGAVGALIVYDISKSSSYENC-NHWLSELRENADDNVAVGLIGNKSDLAHL 133

Query: 126 KQFFIDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQQNVKAVFDAAIRVVLQPPKTKK 185
           +           + T + +   +      + E S+   +NV   F+  I  + Q     +
Sbjct: 134 RA----------VPTEESKTFAQENQLL-FTETSALNSENVDKAFEELINTIYQKVSKHQ 182

Query: 186 KKNKAQKA 193
                  A
Sbjct: 183 MDLGDSSA 190

>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A* Length = 217

 Score =  134 bits (340), Expect = 5e-40
 Identities = 63/206 (30%), Positives = 96/206 (46%), Gaps = 33/206 (16%)

Query: 7   IKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTV---F--------DNFSANVVVNGSTVN 55
           IK + +GD  VGKT  L  YT N F   ++ TV   F                     V+
Sbjct: 26  IKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYNAQGPNGSSGKAFKVH 85

Query: 56  LGLWDTAGQEDYNRLRPLS---YRGADVFILAFSLISKASYENVSKKWIPELKHYA--PG 110
           L LWDTAGQE   R R L+   +R A  F+L F L S+ S+ NV + W+ +L+  A    
Sbjct: 86  LQLWDTAGQE---RFRSLTTAFFRDAMGFLLMFDLTSQQSFLNV-RNWMSQLQANAYCEN 141

Query: 111 VPIILVGTKLDLRDDKQFFIDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQQNVKAVF 170
             I+L+G K DL D ++          ++  Q  EL    G P Y E S+ T QNV+   
Sbjct: 142 PDIVLIGNKADLPDQRE----------VNERQARELADKYGIP-YFETSAATGQNVEKAV 190

Query: 171 DAAIRVVLQPPKTKKKKNKAQKACSI 196
           +  + ++++  + ++   K Q   ++
Sbjct: 191 ETLLDLIMK--RMEQCVEKTQIPDTV 214

>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B* Length = 207

 Score =  134 bits (339), Expect = 6e-40
 Identities = 51/204 (25%), Positives = 90/204 (44%), Gaps = 20/204 (9%)

Query: 1   MSASR--FIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTV-FDNFSANVVVNGSTVNLG 57
           M++ +   +K + +GD  VGKT L+  Y +  F   Y  T+  D  +  V+V+   V + 
Sbjct: 1   MTSRKKVLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQ 60

Query: 58  LWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYA-----PGVP 112
           +WDTAGQE +  L    YRGAD  +L F + +  +++ +   W  E    A        P
Sbjct: 61  IWDTAGQERFQSLGVAFYRGADCCVLVFDVTAPNTFKTL-DSWRDEFLIQASPRDPENFP 119

Query: 113 IILVGTKLDLRDDKQFFIDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQQNVKAVFDA 172
            +++G K+DL + +           ++T + +          Y E S+K   NV+  F  
Sbjct: 120 FVVLGNKIDLENRQ-----------VATKRAQAWCYSKNNIPYFETSAKEAINVEQAFQT 168

Query: 173 AIRVVLQPPKTKKKKNKAQKACSI 196
             R  L+     +  N+  +   +
Sbjct: 169 IARNALKQETEVELYNEFPEPIKL 192

>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A Length = 170

 Score =  131 bits (333), Expect = 2e-39
 Identities = 53/175 (30%), Positives = 92/175 (52%), Gaps = 15/175 (8%)

Query: 7   IKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSA-NVVVNGSTVNLGLWDTAGQE 65
           +K + +GD  VGK+CLL+ +  + F   ++ T+  +F    V +NG  V L +WDTAGQE
Sbjct: 4   MKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQIWDTAGQE 63

Query: 66  DYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYA-PGVPIILVGTKLDLRD 124
            +  +    YRGA   IL + +  + ++ N+ K+W   +  +A     ++LVG K D+ +
Sbjct: 64  RFRTITTAYYRGAMGIILVYDITDERTFTNI-KQWFKTVNEHANDEAQLLLVGNKSDM-E 121

Query: 125 DKQFFIDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQQNVKAVFDAAIRVVLQ 179
            +           ++  QGE L K +G P +IE S+K   NV  +F    +++ +
Sbjct: 122 TRV----------VTADQGEALAKELGIP-FIESSAKNDDNVNEIFFTLAKLIQE 165

>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8 Length = 213

 Score =  133 bits (336), Expect = 2e-39
 Identities = 55/189 (29%), Positives = 94/189 (49%), Gaps = 15/189 (7%)

Query: 7   IKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSA-NVVVNGSTVNLGLWDTAGQE 65
           +K + +GD  VGK+CLL+ +  + F   ++ T+  +F    V +NG  V L LWDTAGQE
Sbjct: 21  MKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQLWDTAGQE 80

Query: 66  DYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYA-PGVPIILVGTKLDLRD 124
            +  +    YRGA   IL + +  + ++ N+ K+W   +  +A     ++LVG K D+ +
Sbjct: 81  RFRTITTAYYRGAMGIILVYDVTDERTFTNI-KQWFKTVNEHANDEAQLLLVGNKSDM-E 138

Query: 125 DKQFFIDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQQNVKAVFDAAIRVVLQPPKTK 184
            +           ++  QGE L K +G P +IE S+K   NV  +F    +++ +   + 
Sbjct: 139 TRV----------VTADQGEALAKELGIP-FIESSAKNDDNVNEIFFTLAKLIQEKIDSN 187

Query: 185 KKKNKAQKA 193
           K        
Sbjct: 188 KLVGVGNGK 196

>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8 Length = 180

 Score =  131 bits (332), Expect = 3e-39
 Identities = 57/176 (32%), Positives = 92/176 (52%), Gaps = 15/176 (8%)

Query: 7   IKCVTVGDGAVGKTCLLISYTSNTFPTD-YVPTV-FDNFSANVVVNGSTVNLGLWDTAGQ 64
            K + VGD  VGKTCLL+ +    F    ++ TV  D  +  + V+G  V L +WDTAGQ
Sbjct: 11  FKVMLVGDSGVGKTCLLVRFKDGAFLAGTFISTVGIDFRNKVLDVDGVKVKLQMWDTAGQ 70

Query: 65  EDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYA-PGVPIILVGTKLDLR 123
           E +  +    YR A   +L + + +KAS++N+ + W+ E+  YA   V ++L+G K+D  
Sbjct: 71  ERFRSVTHAYYRDAHALLLLYDVTNKASFDNI-QAWLTEIHEYAQHDVALMLLGNKVDSA 129

Query: 124 DDKQFFIDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQQNVKAVFDAAIRVVLQ 179
            ++           +    GE+L K  G P ++E S+KT  NV   F A  + + +
Sbjct: 130 HERV----------VKREDGEKLAKEYGLP-FMETSAKTGLNVDLAFTAIAKELKR 174

>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A* Length = 178

 Score =  128 bits (325), Expect = 3e-38
 Identities = 46/184 (25%), Positives = 72/184 (39%), Gaps = 18/184 (9%)

Query: 7   IKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTV-FDNFSANVVVNG-STVNLGLWDTAGQ 64
           +K V +GDGA GKT L   +   TF   Y  T+  D F   + + G   V L +WD  GQ
Sbjct: 7   LKIVVLGDGASGKTSLTTCFAQETFGKQYKQTIGLDFFLRRITLPGNLNVTLQIWDIGGQ 66

Query: 65  EDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYA----PGVPIILVGTKL 120
               ++      GA   +L + + +  S+EN+ + W   +K  +        + LVG K+
Sbjct: 67  TIGGKMLDKYIYGAQGVLLVYDITNYQSFENL-EDWYTVVKKVSEESETQPLVALVGNKI 125

Query: 121 DLRDDKQFFIDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQQNVKAVFDAAIRVVLQP 180
           DL   +           I   +     +  G       S+KT  +V   F      +L  
Sbjct: 126 DLEHMRT----------IKPEKHLRFCQENGFS-SHFVSAKTGDSVFLCFQKVAAEILGI 174

Query: 181 PKTK 184
              K
Sbjct: 175 KLNK 178

>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B* Length = 184

 Score =  128 bits (323), Expect = 7e-38
 Identities = 40/183 (21%), Positives = 70/183 (38%), Gaps = 17/183 (9%)

Query: 7   IKCVTVGDGAVGKTCLLISYTSNTFPT--DYVPTVFDNFSA-NVVVNGS---TVNLGLWD 60
           +K + VG+   GKT LL                TV  +     + +       + L +WD
Sbjct: 3   MKLMIVGNTGSGKTTLLQQLMKTKKSDLGMQSATVGIDVKDWPIQIRDKRKRDLVLNVWD 62

Query: 61  TAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKL 120
            AG+E++    P       +++  + L    +  +  K W+  +K  A   P+ILVGT L
Sbjct: 63  FAGREEFYSTHPHFMTQRALYLAVYDLSKGQAEVDAMKPWLFNIKARASSSPVILVGTHL 122

Query: 121 DLRDDKQFFIDHPGAVPISTAQGEELRKLIGAPA----YIECSSKTQQNVKAVFDAAIRV 176
           D+ D+KQ            +   +EL    G PA    +   +++    +  +    I  
Sbjct: 123 DVSDEKQ-------RKACMSKITKELLNKRGFPAIRDYHFVNATEESDALAKLRKTIINE 175

Query: 177 VLQ 179
            L 
Sbjct: 176 SLN 178

>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B* Length = 189

 Score =  126 bits (319), Expect = 3e-37
 Identities = 51/183 (27%), Positives = 77/183 (42%), Gaps = 25/183 (13%)

Query: 7   IKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTV-FDNFSANVVVNGSTVNLGLWDTAGQE 65
            K + +GD  VGKTCL   + +  FP     T+  D     V ++G  + + LWDTAGQE
Sbjct: 21  FKIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDIDGERIKIQLWDTAGQE 80

Query: 66  DYNRLR----PLSYRGADVFILAFSLISKASYENVSKKWIPELKHYA--PGVPIILVGTK 119
              R R       YR     +  + + + AS+ ++   WI E K +     +P ILVG K
Sbjct: 81  ---RFRKSMVQHYYRNVHAVVFVYDMTNMASFHSL-PAWIEECKQHLLANDIPRILVGNK 136

Query: 120 LDLRDDKQFFIDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQ---QNVKAVFDAAIRV 176
            DLR   Q          + T   ++       P   E S+K      +V+A+F      
Sbjct: 137 CDLRSAIQ----------VPTDLAQKFADTHSMP-LFETSAKNPNDNDHVEAIFMTLAHK 185

Query: 177 VLQ 179
           +  
Sbjct: 186 LKS 188

>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C Length = 208

 Score =  125 bits (317), Expect = 1e-36
 Identities = 46/205 (22%), Positives = 79/205 (38%), Gaps = 23/205 (11%)

Query: 1   MSASRFIKCVTVGDGAVGKTCLLISYT--SNTFPTDYVPTV-FDNFSANVVVNGSTVNLG 57
           ++A+   K   VG+  VGK+ L+  +T   + F  DY  T   +   A V +  +TV++ 
Sbjct: 15  ITATLRCKVAVVGEATVGKSALISMFTSKGSKFLKDYAMTSGVEVVVAPVTIPDTTVSVE 74

Query: 58  LW--DTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYA----PGV 111
           L+  DTAG + Y       + G    IL F + S  S+E+  K W   LK         +
Sbjct: 75  LFLLDTAGSDLYKEQISQYWNGVYYAILVFDVSSMESFESC-KAWFELLKSARPDRERPL 133

Query: 112 PIILVGTKLDLRDDKQFFIDHPGAVPISTAQGEELRKLIGAPAYIECSSK-TQQNVKAVF 170
             +LV  K DL   +           +     ++         + + S+    ++  A F
Sbjct: 134 RAVLVANKTDLPPQRH---------QVRLDMAQDWATTNTLD-FFDVSANPPGKDADAPF 183

Query: 171 DAAIRVVLQPPKTKKKKNKAQKACS 195
            +      +    + K    Q AC 
Sbjct: 184 LSIATTFYR--NYEDKVAAFQDACR 206

>3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding, nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum tepidum} Length = 535

 Score =  127 bits (319), Expect = 2e-34
 Identities = 38/190 (20%), Positives = 56/190 (29%), Gaps = 24/190 (12%)

Query: 7   IKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVV---------NGSTVNLG 57
           IK   +GDG  GKT LL      TF      T   N                        
Sbjct: 42  IKVHLIGDGMAGKTSLLKQLIGETFDPKESQTHGLNVVTKQAPNIKGLENDDELKECLFH 101

Query: 58  LWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVG 117
            WD  GQE  +         + V++L        +  N    W+  ++ Y    P+I+V 
Sbjct: 102 FWDFGGQEIMHASHQFFMTRSSVYMLLLDS---RTDSNK-HYWLRHIEKYGGKSPVIVVM 157

Query: 118 TKLDLRDDKQFFIDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQQNVKAVFDAAIRVV 177
            K+D                I   +  E    I    +   S K    V+++  +    V
Sbjct: 158 NKIDENPSYN----------IEQKKINERFPAIENR-FHRISCKNGDGVESIAKSLKSAV 206

Query: 178 LQPPKTKKKK 187
           L P       
Sbjct: 207 LHPDSIYGTP 216

>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 Length = 170

 Score =  117 bits (294), Expect = 1e-33
 Identities = 53/171 (30%), Positives = 84/171 (49%), Gaps = 11/171 (6%)

Query: 7   IKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTV-FDNFSANVVVNGSTVNLGLWDTAGQE 65
           IK V +G+ AVGK+ +++ + SN F  +  PT+     +  V +N  TV   +WDTAGQE
Sbjct: 4   IKLVLLGEAAVGKSSIVLRFVSNDFAENKEPTIGAAFLTQRVTINEHTVKFEIWDTAGQE 63

Query: 66  DYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYA-PGVPIILVGTKLDLRD 124
            +  L P  YR A   ++ + +    S+    + W+ EL   A   + I LVG K+D   
Sbjct: 64  RFASLAPXYYRNAQAALVVYDVTKPQSFIKA-RHWVKELHEQASKDIIIALVGNKIDXLQ 122

Query: 125 DKQFFIDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQQNVKAVFDAAIR 175
           +        G   ++  +GE+L +  G   + E S+KT +NV  VF     
Sbjct: 123 E-------GGERKVAREEGEKLAEEKGLL-FFETSAKTGENVNDVFLGIGE 165

>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum} Length = 208

 Score =  114 bits (287), Expect = 3e-32
 Identities = 47/217 (21%), Positives = 83/217 (38%), Gaps = 52/217 (23%)

Query: 1   MSASRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTV-FDNFSANVVVNGSTVNLG-- 57
           M      K V +G+ +VGK+ +++  T +TF  +   T+     +  V +N   +     
Sbjct: 2   MEKKSSYKTVLLGESSVGKSSIVLRLTKDTFHENTNTTIGASFCTYVVNLNDINIKNNSN 61

Query: 58  -----------------------------------LWDTAGQEDYNRLRPLSYRGADVFI 82
                                              +WDTAGQE Y  + PL YRGA   I
Sbjct: 62  NEKNNNINSINDDNNVIITNQHNNYNENLCNIKFDIWDTAGQERYASIVPLYYRGATCAI 121

Query: 83  LAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPISTAQ 142
           + F + +  + +   K W+ +LK       IILV  K+D  +  Q          +   +
Sbjct: 122 VVFDISNSNTLDRA-KTWVNQLKIS-SNYIIILVANKIDK-NKFQ----------VDILE 168

Query: 143 GEELRKLIGAPAYIECSSKTQQNVKAVFDAAIRVVLQ 179
            ++  +      +I+ S+KT  N+K +F      + +
Sbjct: 169 VQKYAQDNNLL-FIQTSAKTGTNIKNIFYMLAEEIYK 204

>3c5h_A Glucocorticoid receptor DNA-binding factor 1; RAS, GTPase, glucorticoid receptor, structural genomics consortium, SGC, alternative splicing; HET: GNP; 1.80A {Homo sapiens} Length = 255

 Score = 68.1 bits (166), Expect = 3e-14
 Identities = 26/159 (16%), Positives = 53/159 (33%), Gaps = 23/159 (14%)

Query: 29  NTFPTDYVPTVFDNFSANV----VVNGSTVNLGLWDTAGQEDY--NRLRPLSYRGADVFI 82
           +     +  T    +        + +   +     D  G E     +  P      D F+
Sbjct: 108 DQTFQPHRSTALQPYIKRAAATKLASAEKLMYFCTDQLGLEQDFEQKQMPDGKLLVDGFL 167

Query: 83  LAF--SLISKASYENVSKKWIPELKHYAPG--VPIILVGTKLDLRDDKQFFIDHPGAVPI 138
           L    S     ++++   K++  L +       PI++V TK D   ++           I
Sbjct: 168 LGIDVSRGMNRNFDDQ-LKFVSNLYNQLAKTKKPIVVVLTKCDEGVERY----------I 216

Query: 139 STAQGEELRKLIGAPAYIECSSKTQQNVKAVFDAAIRVV 177
             A    L K       +E S+++  NV   F   ++++
Sbjct: 217 RDAHTFALSKK-NLQ-VVETSARSNVNVDLAFSTLVQLI 253

>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A* Length = 198

 Score = 64.4 bits (157), Expect = 3e-13
 Identities = 42/194 (21%), Positives = 63/194 (32%), Gaps = 37/194 (19%)

Query: 7   IKCVTVGDGAVGKTCLL----------ISYTSNTFPTDYVPTVFDNFSANVV--VNGSTV 54
            K V  G G  GKT  L                +  T+   T+F +F    +  V G   
Sbjct: 15  FKIVYYGPGLSGKTTNLKWIYSKVPEGRKGEMVSLATEDERTLFFDFLPLDIGEVKGFKT 74

Query: 55  NLGLWDTAGQEDYNRLRPLSYRGADVFIL------AFSLISKASYENVSKKWIPELKHYA 108
              L+   GQ  YN  R L  RG D  +            +  S  N+ +          
Sbjct: 75  RFHLYTVPGQVFYNASRKLILRGVDGIVFVADSAPNRLRANAESMRNMRENLAEYGLTLD 134

Query: 109 PGVPIILVGTKLDLRDDKQFFIDHPGAVPISTAQGEELRKLIGAPA---YIECSSKTQQN 165
             VPI++   K DL          P A+P+     E +R ++        +E  +   + 
Sbjct: 135 -DVPIVIQVNKRDL----------PDALPV-----EMVRAVVDPEGKFPVLEAVATEGKG 178

Query: 166 VKAVFDAAIRVVLQ 179
           V        R+VL 
Sbjct: 179 VFETLKEVSRLVLA 192

>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} Length = 307

 Score = 60.0 bits (145), Expect = 3e-11
 Identities = 30/202 (14%), Positives = 72/202 (35%), Gaps = 20/202 (9%)

Query: 8   KCVTVGDGAVGKTCLLISYTSNTFPTDYV---PTVFDNFSANVVVNGSTVNLGLWDTAGQ 64
           K + +G    GK+ +     SN    D      T+  +   + +     + L LWD  GQ
Sbjct: 5   KLLLMGRSGSGKSSMRSIIFSNYSAFDTRRLGATI--DVEHSHLRFLGNMTLNLWDCGGQ 62

Query: 65  EDY-----NRLRPLSYRGADVFILAFSLISKASYENVS--KKWIPELKHYAPGVPIILVG 117
           + +      + +   ++   V I  F + S    +++    K + +L+ Y+P   I ++ 
Sbjct: 63  DVFMENYFTKQKDHIFQMVQVLIHVFDVESTEVLKDIEIFAKALKQLRKYSPDAKIFVLL 122

Query: 118 TKLDL--RDDKQFFIDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQQNVKAVFDAAI- 174
            K+DL   D ++          +     E   +          +S   +++   +   + 
Sbjct: 123 HKMDLVQLDKREELFQI-----MMKNLSETSSEFGFPNLIGFPTSIWDESLYKAWSQIVC 177

Query: 175 RVVLQPPKTKKKKNKAQKACSI 196
            ++      +    K ++  + 
Sbjct: 178 SLIPNMSNHQSNLKKFKEIMNA 199

>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A* Length = 196

 Score = 50.4 bits (120), Expect = 3e-08
 Identities = 21/124 (16%), Positives = 41/124 (33%), Gaps = 11/124 (8%)

Query: 7   IKCVTVGDGAVGKTCLLISYTSNTFPTD---YVPTVFDNFSANVVVNGSTVNLGLWDTAG 63
            + + +G    GK+ +         P +      T       + + N S VN  +WD  G
Sbjct: 21  PRILLMGLRRSGKSSIQKVVFHKMSPNETLFLESTN--KIYKDDISNSSFVNFQIWDFPG 78

Query: 64  QEDYNRL---RPLSYRGADVFILAFSLISKASYENVSK--KWIPELKHYAPGVPIILVGT 118
           Q D+        + +RG    I           E +++    + +     P +   +   
Sbjct: 79  QMDFFDPTFDYEMIFRGTGALIYVIDAQDD-YMEALTRLHITVSKAYKVNPDMNFEVFIH 137

Query: 119 KLDL 122
           K+D 
Sbjct: 138 KVDG 141

>3r7w_B Gtpase2, GTP-binding protein GTR2; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} Length = 331

 Score = 41.2 bits (96), Expect = 8e-05
 Identities = 16/116 (13%), Positives = 38/116 (32%), Gaps = 7/116 (6%)

Query: 12  VGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQEDYNRLR 71
           +G    GK+ +      N  P D    +    + ++    + ++L + +  GQ +Y    
Sbjct: 5   MGVRRCGKSSICKVVFHNMQPLD-TLYLESTSNPSLEHFSTLIDLAVMELPGQLNYFEPS 63

Query: 72  PLS---YRGADVFILAFSLISKASYENVSK--KWIPELKHYAPGVPIILVGTKLDL 122
             S   ++     +             ++     I       P + I ++  K+D 
Sbjct: 64  YDSERLFKSVGALVYVID-SQDEYINAITNLAMIIEYAYKVNPSINIEVLIHKVDG 118

>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A* Length = 188

 Score = 39.1 bits (92), Expect = 3e-04
 Identities = 42/178 (23%), Positives = 64/178 (35%), Gaps = 46/178 (25%)

Query: 12  VG-DGAVGKTCLLISYTSNTFPTDYVPTV-FDNFSANV-VVNGSTVNLGLWDTAGQEDYN 68
           VG   + GKT  +    S  F  D +PTV F     N+  +    V + LWD  GQ    
Sbjct: 28  VGLQYS-GKTTFVNVIASGQFNEDMIPTVGF-----NMRKITKGNVTIKLWDIGGQP--- 78

Query: 69  RLRPL---SYRGADVFI----------LAFSLISKASYENVSKKWIPELKHYAPGVPIIL 115
           R R +     RG    +          +     SK    N+  K  P+L+    G+P+++
Sbjct: 79  RFRSMWERYCRGVSAIVYMVDAADQEKIE---ASKNELHNLLDK--PQLQ----GIPVLV 129

Query: 116 VGTKLDLRDDKQFFIDHPGAVPIST-AQGEELRKLIGAPAYI-ECSSKTQQNVKAVFD 171
           +G K DL          PGA+      +   L  +          S K + N+     
Sbjct: 130 LGNKRDL----------PGALDEKELIEKMNLSAIQDREICCYSISCKEKDNIDITLQ 177

>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2 Length = 214

 Score = 37.8 bits (88), Expect = 9e-04
 Identities = 14/63 (22%), Positives = 23/63 (36%), Gaps = 5/63 (7%)

Query: 14 DGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQEDYNRLRPL 73
            + GKT L +   +  +      ++ D+ +   V N    +L L D  G E    LR  
Sbjct: 16 CDS-GKTLLFVRLLTGQYRDT-QTSITDSSAIYKVNNNRGNSLTLIDLPGHE---SLRFQ 70

Query: 74 SYR 76
             
Sbjct: 71 LLD 73

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	197
4dkx_A	216	RAS-related protein RAB-6A; GTP binding fold, memb	100.0
2j0v_A	212	RAC-like GTP-binding protein ARAC7; nucleotide-bin	100.0
3oes_A	201	GTPase rhebl1; small GTPase, structural genomics,	100.0
3reg_A	194	RHO-like small GTPase; cytoskeleton, nucleotide-bi	100.0
3t5g_A	181	GTP-binding protein RHEB; immunoglobulin-like beta	100.0
4dsu_A	189	GTPase KRAS, isoform 2B; small G-protein, signalin	100.0
3bwd_D	182	RAC-like GTP-binding protein ARAC6; G domain, cyto	100.0
2atx_A	194	Small GTP binding protein TC10; GTPase, P-loop, al	100.0
2bov_A	206	RAla, RAS-related protein RAL-A; C3BOT, exoenzyme,	100.0
3q3j_B	214	RHO-related GTP-binding protein RHO6; RAS-binding	100.0
1mh1_A	186	RAC1; GTP-binding, GTPase, small G-protein, RHO fa	100.0
2q3h_A	201	RAS homolog gene family, member U; GTPase, structu	100.0
1m7b_A	184	RND3/RHOE small GTP-binding protein; small GTPase,	100.0
2gf0_A	199	GTP-binding protein DI-RAS1; GDP/GTP binding, GTP	100.0
3c5c_A	187	RAS-like protein 12; GDP, GTPase, structural genom	100.0
3tw8_B	181	RAS-related protein RAB-35; longin domain, RAB GTP	100.0
3kkq_A	183	RAS-related protein M-RAS; GTP-binding, GTPase, si	100.0
2j1l_A	214	RHO-related GTP-binding protein RHOD; GTPase, memb	100.0
3ihw_A	184	Centg3; RAS, centaurin, GTPase, structural genomic	100.0
1z08_A	170	RAS-related protein RAB-21; RAB GTPase, vesicular	100.0
2gco_A	201	H9, RHO-related GTP-binding protein RHOC; GTPase,s	100.0
2fu5_C	183	RAS-related protein RAB-8A; MSS4:RAB8 protein comp	100.0
2fv8_A	207	H6, RHO-related GTP-binding protein RHOB; GDP/GTP	100.0
1gwn_A	205	RHO-related GTP-binding protein RHOE; GTPase, inac	100.0
2iwr_A	178	Centaurin gamma 1; ANK repeat, zinc-finger, GTP-bi	100.0
2fn4_A	181	P23, RAS-related protein R-RAS; GDP/GTP binding, G	100.0
2bcg_Y	206	Protein YP2, GTP-binding protein YPT1; RABGTPase,	100.0
4gzl_A	204	RAS-related C3 botulinum toxin substrate 1; rossma	100.0
2ew1_A	201	RAS-related protein RAB-30; G-protein, GTP analogu	100.0
3cpj_B	223	GTP-binding protein YPT31/YPT8; RAB GTPase, prenyl	100.0
1c1y_A	167	RAS-related protein RAP-1A; GTP-binding proteins,	100.0
1u8z_A	168	RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNH	100.0
1r2q_A	170	RAS-related protein RAB-5A; GTPase, GNP, atomic re	100.0
2bme_A	186	RAB4A, RAS-related protein RAB4A; GTP-binding prot	100.0
2hup_A	201	RAS-related protein RAB-43; G-protein, GDP, struct	100.0
2efe_B	181	Small GTP-binding protein-like; GEF, GTPase, VPS9,	100.0
1z2a_A	168	RAS-related protein RAB-23; RAB GTPase, vesicular	100.0
2a5j_A	191	RAS-related protein RAB-2B; GTPase, signal transdu	100.0
1z0f_A	179	RAB14, member RAS oncogene family; RAB GTPase, ves	100.0
2gf9_A	189	RAS-related protein RAB-3D; G-protein, structural	100.0
3tkl_A	196	RAS-related protein RAB-1A; vesicle trafficking, p	100.0
2g6b_A	180	RAS-related protein RAB-26; G-protein, GTP analogu	100.0
3q72_A	166	GTP-binding protein RAD; G-domain, CAV2 beta, sign	100.0
2nzj_A	175	GTP-binding protein REM 1; GDP/GTP binding, GTP hy	100.0
2atv_A	196	RERG, RAS-like estrogen-regulated growth inhibitor	100.0
1ek0_A	170	Protein (GTP-binding protein YPT51); vesicular tra	100.0
1z0j_A	170	RAB-22, RAS-related protein RAB-22A; RAB GTPase, R	100.0
2o52_A	200	RAS-related protein RAB-4B; G-protein, GDP, struct	100.0
1kao_A	167	RAP2A; GTP-binding protein, small G protein, GDP,	100.0
2hxs_A	178	RAB-26, RAS-related protein RAB-28; GTPase, signal	100.0
2g3y_A	211	GTP-binding protein GEM; small GTPase, GDP, inacti	100.0
3q85_A	169	GTP-binding protein REM 2; G-domain, CAV2 beta, si	100.0
2a9k_A	187	RAS-related protein RAL-A; bacterial ADP-ribosyltr	100.0
1wms_A	177	RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, p	100.0
2fg5_A	192	RAB-22B, RAS-related protein RAB-31; G-protein, GT	100.0
2oil_A	193	CATX-8, RAS-related protein RAB-25; G-protein, GDP	100.0
1g16_A	170	RAS-related protein SEC4; G protein RAB, signaling	100.0
2p5s_A	199	RAS and EF-hand domain containing; G-protein, RAB,	100.0
2erx_A	172	GTP-binding protein DI-RAS2; GTP hydrolysis, trans	100.0
2y8e_A	179	RAB-protein 6, GH09086P, RAB6; hydrolase, nucleoti	100.0
3con_A	190	GTPase NRAS; structural genomics consortium, SGC,	100.0
1zbd_A	203	Rabphilin-3A; G protein, effector, RABCDR, synapti	100.0
3bc1_A	195	RAS-related protein RAB-27A; RAB27, GTPase, RAB, s	100.0
3cbq_A	195	GTP-binding protein REM 2; FLJ38964A, structural g	100.0
2il1_A	192	RAB12; G-protein, GDP, GTPase, predicted, structur	100.0
1vg8_A	207	RAS-related protein RAB-7; GTP-binding protein, pr	100.0
1z06_A	189	RAS-related protein RAB-33B; RAB GTPase, RAB33B GT	100.0
1ky3_A	182	GTP-binding protein YPT7P; vesicular traffic, GTP	100.0
2yc2_C	208	IFT27, small RAB-related GTPase; transport protein	100.0
3clv_A	208	RAB5 protein, putative; malaria, GTPase, structura	100.0
3dz8_A	191	RAS-related protein RAB-3B; GDP, GTPase, structura	100.0
2ce2_X	166	GTPase HRAS; signaling protein, guanine nucleotide	100.0
1x3s_A	195	RAS-related protein RAB-18; GTPase, GNP, structura	100.0
2f7s_A	217	C25KG, RAS-related protein RAB-27B; G-protein, str	100.0
2cjw_A	192	GTP-binding protein GEM; nucleotide-binding, small	100.0
3cph_A	213	RAS-related protein SEC4; RAB GTPase, prenylation,	100.0
2wkq_A	332	NPH1-1, RAS-related C3 botulinum toxin substrate 1	100.0
3t1o_A	198	Gliding protein MGLA; G domain containing protein,	100.0
4djt_A	218	GTP-binding nuclear protein GSP1; structural genom	100.0
3l0i_B	199	RAS-related protein RAB-1A; GEF-GDF-RAB complex, G	100.0
4bas_A	199	ADP-ribosylation factor, putative (small GTPase, p	100.0
3gj0_A	221	GTP-binding nuclear protein RAN; G protein, GDP, a	100.0
3th5_A	204	RAS-related C3 botulinum toxin substrate 1; rossma	100.0
1upt_A	171	ARL1, ADP-ribosylation factor-like protein 1; hydr	99.98
1m2o_B	190	GTP-binding protein SAR1, GTP binding protein; zin	99.98
1zd9_A	188	ADP-ribosylation factor-like 10B; transport protei	99.98
1f6b_A	198	SAR1; gtpases, N-terminal helix, Mg-containing com	99.98
1r8s_A	164	ADP-ribosylation factor 1; protein transport/excha	99.98
1ksh_A	186	ARF-like protein 2; small GTPase, small GTP-bindin	99.98
2h57_A	190	ADP-ribosylation factor-like protein 6; GTP, GTPas	99.98
1zj6_A	187	ADP-ribosylation factor-like protein 5; ARL, GTP-b	99.98
2b6h_A	192	ADP-ribosylation factor 5; membrane trafficking, G	99.97
3llu_A	196	RAS-related GTP-binding protein C; structural geno	99.97
2x77_A	189	ADP-ribosylation factor; GTP-binding protein, smal	99.97
1fzq_A	181	ADP-ribosylation factor-like protein 3; protein-GD	99.97
2h17_A	181	ADP-ribosylation factor-like protein 5A; GDP, GTPa	99.97
2zej_A	184	Dardarin, leucine-rich repeat kinase 2; parkinson'	99.97
2f9l_A	199	RAB11B, member RAS oncogene family; RAB11B GTPase,	99.97
1moz_A	183	ARL1, ADP-ribosylation factor-like protein 1; GTP-	99.97
1oix_A	191	RAS-related protein RAB-11A; small G protein, intr	99.97
2fh5_B	214	SR-beta, signal recognition particle receptor beta	99.97
2lkc_A	178	Translation initiation factor IF-2; NMR {Geobacill	99.97
3c5h_A	255	Glucocorticoid receptor DNA-binding factor 1; RAS,	99.96
2qu8_A	228	Putative nucleolar GTP-binding protein 1; GTPase,	99.96
3r7w_B	331	Gtpase2, GTP-binding protein GTR2; RAG gtpases, GT	99.96
3o47_A	329	ADP-ribosylation factor GTPase-activating protein	99.96
3r7w_A	307	Gtpase1, GTP-binding protein GTR1; RAG gtpases, GT	99.96
2wji_A	165	Ferrous iron transport protein B homolog; membrane	99.96
1svi_A	195	GTP-binding protein YSXC; ENGB, GTPase, GDP, hydro	99.95
2dyk_A	161	GTP-binding protein; GTPase, ribosome-binding prot	99.95
3lvq_E	497	ARF-GAP with SH3 domain, ANK repeat and PH domain	99.95
3dpu_A	535	RAB family protein; roccor, G-domain, COR, GTP-bin	99.95
2gj8_A	172	MNME, tRNA modification GTPase TRME; G-domain dime	99.95
3pqc_A	195	Probable GTP-binding protein ENGB; rossmann fold,	99.95
3iev_A	308	GTP-binding protein ERA; ERA, GTPase, KH domain, a	99.95
2wjg_A	188	FEOB, ferrous iron transport protein B homolog; me	99.95
2cxx_A	190	Probable GTP-binding protein ENGB; structural geno	99.95
3a1s_A	258	Iron(II) transport protein B; FEOB, iron transport	99.95
1wf3_A	301	GTP-binding protein; GTPase, riken structural geno	99.94
3b1v_A	272	Ferrous iron uptake transporter protein B; G prote	99.94
4dhe_A	223	Probable GTP-binding protein ENGB; melioidosis, RA	99.93
3iby_A	256	Ferrous iron transport protein B; G protein, G dom	99.93
3gee_A	476	MNME, tRNA modification GTPase MNME; G protein, cy	99.93
3i8s_A	274	Ferrous iron transport protein B; GTPase, GPCR, ir	99.93
3k53_A	271	Ferrous iron transport protein B; GTPase fold, hel	99.93
2hjg_A	436	GTP-binding protein ENGA; GTPase ENGA KH-domain, h	99.92
1nrj_B	218	SR-beta, signal recognition particle receptor beta	99.92
4dcu_A	456	GTP-binding protein ENGA; GTPase, GDP, protein bin	99.92
1mky_A	439	Probable GTP-binding protein ENGA; GTPase, DER, KH	99.92
2e87_A	357	Hypothetical protein PH1320; GTP-binding, GTPase,	99.91
3qq5_A	423	Small GTP-binding protein; hydrogenase, H-cluster,	99.91
3sjy_A	403	Translation initiation factor 2 subunit gamma; zin	99.91
1xzp_A	482	Probable tRNA modification GTPase TRME; GTP-bindin	99.91
1cip_A	353	Protein (guanine nucleotide-binding protein alpha-	99.91
1ega_A	301	Protein (GTP-binding protein ERA); GTPase, RNA-bin	99.9
3izy_P	537	Translation initiation factor IF-2, mitochondrial;	99.9
1s0u_A	408	EIF-2-gamma, translation initiation factor 2 gamma	99.9
2xtp_A	260	GTPase IMAP family member 2; immune system, G prot	99.9
2ywe_A	600	GTP-binding protein LEPA; G domain, beta-barrel, f	99.9
2xtz_A	354	Guanine nucleotide-binding protein alpha-1 subuni;	99.89
3geh_A	462	MNME, tRNA modification GTPase MNME; G protein, U3	99.89
3ohm_A	327	Guanine nucleotide-binding protein G(Q) subunit A;	99.89
1lnz_A	342	SPO0B-associated GTP-binding protein; GTPase, OBG,	99.89
3lxx_A	239	GTPase IMAP family member 4; structural genomics c	99.89
1wb1_A	482	Translation elongation factor SELB; selenocysteine	99.89
1mky_A	439	Probable GTP-binding protein ENGA; GTPase, DER, KH	99.89
3cb4_D	599	GTP-binding protein LEPA; GTPase, OB-fold, membran	99.89
2hjg_A	436	GTP-binding protein ENGA; GTPase ENGA KH-domain, h	99.89
1zcb_A	362	G alpha I/13; GTP-binding, lipoprotein, membrane,	99.89
1kk1_A	410	EIF2gamma; initiation of translation; HET: GNP; 1.	99.88
2c78_A	405	Elongation factor TU-A; hydrolase, GTPase, transla	99.88
4fid_A	340	G protein alpha subunit; RAS-like domain, all-heli	99.87
1jny_A	435	EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF-	99.87
3lxw_A	247	GTPase IMAP family member 1; immunity, structural	99.87
3j2k_7	439	ERF3, eukaryotic polypeptide chain release factor	99.87
2qtf_A	364	Protein HFLX, GTP-binding protein; beta-alpha-barr	99.87
1d2e_A	397	Elongation factor TU (EF-TU); G-protein, beta-barr	99.87
2ged_A	193	SR-beta, signal recognition particle receptor beta	99.87
1g7s_A	594	Translation initiation factor IF2/EIF5B; translati	99.87
1zo1_I	501	IF2, translation initiation factor 2; E. coli, rib	99.86
1azs_C	402	GS-alpha; complex (lyase/hydrolase), hydrolase, si	99.86
3p26_A	483	Elongation factor 1 alpha-like protein; GTP/GDP bi	99.86
3tr5_A	528	RF-3, peptide chain release factor 3; protein synt	99.86
1zun_B	434	Sulfate adenylate transferase, subunit 1/adenylyls	99.85
2qag_A	361	Septin-2, protein NEDD5; cell cycle, cell division	99.85
3t5d_A	274	Septin-7; GTP-binding protein, cytoskeleton, signa	99.85
4dcu_A	456	GTP-binding protein ENGA; GTPase, GDP, protein bin	99.85
1f60_A	458	Elongation factor EEF1A; protein-protein complex,	99.84
2elf_A	370	Protein translation elongation factor 1A; tRNA, py	99.84
1r5b_A	467	Eukaryotic peptide chain release factor GTP-bindi	99.84
3izq_1	611	HBS1P, elongation factor 1 alpha-like protein; NO-	99.84
3avx_A	1289	Elongation factor TS, elongation factor TU, linke	99.84
1pui_A	210	ENGB, probable GTP-binding protein ENGB; structura	99.83
2aka_B	299	Dynamin-1; fusion protein, GTPase domain, myosin,	99.83
3def_A	262	T7I23.11 protein; chloroplast, TOC33, GTPase, hydr	99.82
3mca_A	592	HBS1, elongation factor 1 alpha-like protein; prot	99.81
1u0l_A	301	Probable GTPase ENGC; permutation, OB-fold, zinc-f	99.81
2dy1_A	665	Elongation factor G; translocation, GTP complex, s	99.81
2h5e_A	529	Peptide chain release factor RF-3; beta barrel, tr	99.79
1h65_A	270	Chloroplast outer envelope protein OEP34; GTPase,	99.79
2j69_A	695	Bacterial dynamin-like protein; FZO, FZL, GTPase,	99.79
1dar_A	691	EF-G, elongation factor G; ribosomal translocase,	99.78
2qnr_A	301	Septin-2, protein NEDD5; structural genomics conso	99.78
2xex_A	693	Elongation factor G; GTPase, translation, biosynth	99.77
1jwy_B	315	Dynamin A GTPase domain; dynamin, GTPase, GDP, myo	99.76
3t34_A	360	Dynamin-related protein 1A, linker, dynamin-relat	99.76
1udx_A	416	The GTP-binding protein OBG; TGS domain, riken str	99.76
2rdo_7	704	EF-G, elongation factor G; elongation factor G, EF	99.76
2qag_C	418	Septin-7; cell cycle, cell division, GTP-binding,	99.75
1wxq_A	397	GTP-binding protein; structural genomics, riken st	99.74
2wsm_A	221	Hydrogenase expression/formation protein (HYPB); m	99.72
2hf9_A	226	Probable hydrogenase nickel incorporation protein	99.69
2x2e_A	353	Dynamin-1; nitration, hydrolase, membrane fission,	99.69
3p32_A	355	Probable GTPase RV1496/MT1543; structural genomics	99.68
1n0u_A	842	EF-2, elongation factor 2; G-protein, CIS-proline,	99.67
1jal_A	363	YCHF protein; nucleotide-binding fold, structural	99.66
2qpt_A	550	EH domain-containing protein-2; protein-nucleotide	99.65
3vqt_A	548	RF-3, peptide chain release factor 3; translation,	99.62
2www_A	349	Methylmalonic aciduria type A protein, mitochondri	99.62
1yrb_A	262	ATP(GTP)binding protein; GTPase, P-loop, rossman f	99.62
2dby_A	368	GTP-binding protein; GDP, structural genomics, NPP	99.58
2p67_A	341	LAO/AO transport system kinase; ARGK, structural G	99.57
2yv5_A	302	YJEQ protein; hydrolase, GTPase, permutation, stru	99.53
4a9a_A	376	Ribosome-interacting GTPase 1; DRG-DFRP complex, r	99.51
3zvr_A	772	Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mito	99.51
3j25_A	638	Tetracycline resistance protein TETM; antibiotic r	99.51
4fn5_A	709	EF-G 1, elongation factor G 1; translation, transl	99.47
2qm8_A	337	GTPase/ATPase; G protein, G3E, metallochaperone, c	99.42
3l82_B	227	F-box only protein 4; TRFH domain, helix, GTPase d	99.39
2ohf_A	396	Protein OLA1, GTP-binding protein 9; ATPase, GTPas	99.26
3l2o_B	312	F-box only protein 4; small G protein fold, UBL co	99.25
1ni3_A	392	YCHF GTPase, YCHF GTP-binding protein; structural	99.21
3h2y_A	368	GTPase family protein; GTP-binding protein YQEH, p	99.09
3ec1_A	369	YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase	98.99
3sop_A	270	Neuronal-specific septin-3; hydrolase; HET: GDP; 2	98.96
2qag_B	427	Septin-6, protein NEDD5; cell cycle, cell division	98.93
3ec1_A	369	YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase	98.92
2j37_W	504	Signal recognition particle 54 kDa protein (SRP54)	98.88
1tq4_A	413	IIGP1, interferon-inducible GTPase; interferon gam	98.86
3h2y_A	368	GTPase family protein; GTP-binding protein YQEH, p	98.81
1puj_A	282	YLQF, conserved hypothetical protein YLQF; structu	98.8
1puj_A	282	YLQF, conserved hypothetical protein YLQF; structu	98.6
3cnl_A	262	YLQF, putative uncharacterized protein; circular p	98.55
1f5n_A	592	Interferon-induced guanylate-binding protein 1; GB	98.47
2v3c_C	432	SRP54, signal recognition 54 kDa protein; nucleoti	98.38
3cnl_A	262	YLQF, putative uncharacterized protein; circular p	98.36
3dm5_A	443	SRP54, signal recognition 54 kDa protein; protein-	98.28
1t9h_A	307	YLOQ, probable GTPase ENGC; N-terminal beta-barrel	98.26
3szr_A	608	Interferon-induced GTP-binding protein MX1; interf	98.1
1j8m_F	297	SRP54, signal recognition 54 kDa protein; signalin	97.99
1bif_A	469	6-phosphofructo-2-kinase/ fructose-2,6-bisphospha;	97.98
2rcn_A	358	Probable GTPase ENGC; YJEQ, circularly permuted, G	97.94
3kl4_A	433	SRP54, signal recognition 54 kDa protein; signal r	97.93
3q5d_A	447	Atlastin-1; G protein, GTPase, GDP/GTP binding, hy	97.71
3asz_A	211	Uridine kinase; cytidine phosphorylation, transfer	97.6
1ye8_A	178	Protein THEP1, hypothetical UPF0334 kinase-like pr	97.58
1kgd_A	180	CASK, peripheral plasma membrane CASK; maguk, guan	97.54
3ney_A	197	55 kDa erythrocyte membrane protein; structural ge	97.54
4eun_A	200	Thermoresistant glucokinase; putative sugar kinase	97.48
1t9h_A	307	YLOQ, probable GTPase ENGC; N-terminal beta-barrel	97.48
1lvg_A	198	Guanylate kinase, GMP kinase; transferase; HET: AD	97.48
2j41_A	207	Guanylate kinase; GMP, GMK, transferase, ATP-bindi	97.46
1y63_A	184	LMAJ004144AAA protein; structural genomics, protei	97.44
2yv5_A	302	YJEQ protein; hydrolase, GTPase, permutation, stru	97.44
3tau_A	208	Guanylate kinase, GMP kinase; structural genomics,	97.42
1ex7_A	186	Guanylate kinase; substrate-induced FIT, domain mo	97.4
1qf9_A	194	UMP/CMP kinase, protein (uridylmonophosphate/cytid	97.38
3a00_A	186	Guanylate kinase, GMP kinase; domain movement, dim	97.36
1s96_A	219	Guanylate kinase, GMP kinase; E.coli, dimer, SAD,	97.35
3tr0_A	205	Guanylate kinase, GMP kinase; purines, pyrimidines	97.33
4gp7_A	171	Metallophosphoesterase; polynucleotide kinase phos	97.32
1knq_A	175	Gluconate kinase; ALFA/beta structure, transferase	97.31
1z6g_A	218	Guanylate kinase; structural genomics, SGC, struct	97.3
1znw_A	207	Guanylate kinase, GMP kinase; ATP:GMP-phosphotrans	97.29
1zp6_A	191	Hypothetical protein ATU3015; alpha-beta protein.,	97.28
1nn5_A	215	Similar to deoxythymidylate kinase (thymidylate K;	97.25
3c8u_A	208	Fructokinase; YP_612366.1, putative fructose trans	97.25
2qor_A	204	Guanylate kinase; phosphotransferase, purine metab	97.22
3tif_A	235	Uncharacterized ABC transporter ATP-binding prote;	97.16
1htw_A	158	HI0065; nucleotide-binding fold, structural genomi	97.15
3lw7_A	179	Adenylate kinase related protein (ADKA-like); AMP,	97.14
1kag_A	173	SKI, shikimate kinase I; transferase, structural g	97.14
1ukz_A	203	Uridylate kinase; transferase; HET: ADP AMP; 1.90A	97.13
3kb2_A	173	SPBC2 prophage-derived uncharacterized protein YOR	97.12
3fb4_A	216	Adenylate kinase; psychrophIle, phosphotransferase	97.12
2bdt_A	189	BH3686; alpha-beta protein, structural genomics, P	97.12
1zd8_A	227	GTP:AMP phosphotransferase mitochondrial; ATP:AMP	97.11
1ly1_A	181	Polynucleotide kinase; PNK, phosphatase, transfera	97.1
3dl0_A	216	Adenylate kinase; phosphotransferase, zinc coordin	97.09
2cdn_A	201	Adenylate kinase; phosphoryl transfer, associative	97.09
2bbw_A	246	Adenylate kinase 4, AK4; nucleotide kinase, nucleo	97.08
3vaa_A	199	Shikimate kinase, SK; structural genomics, center	97.07
2pcj_A	224	ABC transporter, lipoprotein-releasing system ATP-	97.07
3uie_A	200	Adenylyl-sulfate kinase 1, chloroplastic; rossmann	97.06
2i3b_A	189	HCR-ntpase, human cancer-related ntpase; AAA, ross	97.06
1np6_A	174	Molybdopterin-guanine dinucleotide biosynthesis pr	97.05
2jaq_A	205	Deoxyguanosine kinase; transferase, deoxyribonucle	97.05
2eyu_A	261	Twitching motility protein PILT; pilus retraction	97.05
2onk_A	240	Molybdate/tungstate ABC transporter, ATP-binding p	97.05
2rcn_A	358	Probable GTPase ENGC; YJEQ, circularly permuted, G	97.04
2v54_A	204	DTMP kinase, thymidylate kinase; nucleotide biosyn	97.03
3sr0_A	206	Adenylate kinase; phosphoryl transfer analogue, AL	97.03
3cm0_A	186	Adenylate kinase; ATP-binding, cytoplasm, nucleoti	97.03
2cbz_A	237	Multidrug resistance-associated protein 1; ABC pro	97.02
3gfo_A	275	Cobalt import ATP-binding protein CBIO 1; structur	97.02
1b0u_A	262	Histidine permease; ABC transporter, transport pro	97.02
1sgw_A	214	Putative ABC transporter; structural genomics, P p	97.01
1qhx_A	178	CPT, protein (chloramphenicol phosphotransferase);	97.01
3tlx_A	243	Adenylate kinase 2; structural genomics, structura	97.01
3t61_A	202	Gluconokinase; PSI-biology, structural genomics, p	97.01
1uj2_A	252	Uridine-cytidine kinase 2; alpha/beta mononucleoti	97.0
3iij_A	180	Coilin-interacting nuclear ATPase protein; alpha a	97.0
1cke_A	227	CK, MSSA, protein (cytidine monophosphate kinase);	96.99
2v9p_A	305	Replication protein E1; AAA+ molecular motor, DNA	96.99
2plr_A	213	DTMP kinase, probable thymidylate kinase; TMP-bind	96.99
4g1u_C	266	Hemin import ATP-binding protein HMUV; membrane tr	96.99
2rhm_A	193	Putative kinase; P-loop containing nucleoside trip	96.98
1mv5_A	243	LMRA, multidrug resistance ABC transporter ATP-bin	96.98
2ff7_A	247	Alpha-hemolysin translocation ATP-binding protein	96.98
1gvn_B	287	Zeta; postsegregational killing system, plasmid; 1	96.98
1g6h_A	257	High-affinity branched-chain amino acid transport	96.97
1nks_A	194	Adenylate kinase; thermophilic, transferase; HET:	96.97
1aky_A	220	Adenylate kinase; ATP:AMP phosphotransferase, myok	96.97
2pze_A	229	Cystic fibrosis transmembrane conductance regulat;	96.97
1kht_A	192	Adenylate kinase; phosphotransferase, signaling pr	96.96
2olj_A	263	Amino acid ABC transporter; ABC domain, ATPase, hy	96.96
1e4v_A	214	Adenylate kinase; transferase(phosphotransferase);	96.96
2if2_A	204	Dephospho-COA kinase; alpha-beta protein, structur	96.95
1ji0_A	240	ABC transporter; ATP binding protein, structural g	96.94
2d2e_A	250	SUFC protein; ABC-ATPase, SUF protein, 310-helix,	96.94
2ghi_A	260	Transport protein; multidrug resistance protein, M	96.93
3b85_A	208	Phosphate starvation-inducible protein; PHOH2, ATP	96.93
1vpl_A	256	ABC transporter, ATP-binding protein; TM0544, stru	96.92
2qi9_C	249	Vitamin B12 import ATP-binding protein BTUD; inner	96.92
2vli_A	183	Antibiotic resistance protein; transferase, tunica	96.92
3be4_A	217	Adenylate kinase; malaria, cryptosporidium parvum	96.91
3aez_A	312	Pantothenate kinase; transferase, homodimer, COA b	96.91
2ixe_A	271	Antigen peptide transporter 1; ABC ATPase, hydrola	96.91
1odf_A	290	YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser	96.91
2zu0_C	267	Probable ATP-dependent transporter SUFC; iron-sulf	96.9
3tqc_A	321	Pantothenate kinase; biosynthesis of cofactors, pr	96.89
3ec2_A	180	DNA replication protein DNAC; helicase loader, rep	96.89
2f1r_A	171	Molybdopterin-guanine dinucleotide biosynthesis pr	96.89
1rz3_A	201	Hypothetical protein rbstp0775; MCSG, structural g	96.89
1zak_A	222	Adenylate kinase; ATP:AMP-phosphotransferase, tran	96.89
3trf_A	185	Shikimate kinase, SK; amino acid biosynthesis, tra	96.89
1vht_A	218	Dephospho-COA kinase; structural genomics, transfe	96.89
1tev_A	196	UMP-CMP kinase; ploop, NMP binding region, LID reg	96.88
2ihy_A	279	ABC transporter, ATP-binding protein; ATPase, ABC	96.88
1u0l_A	301	Probable GTPase ENGC; permutation, OB-fold, zinc-f	96.87
2ehv_A	251	Hypothetical protein PH0186; KAIC, RECA ATPase, un	96.87
2chg_A	226	Replication factor C small subunit; DNA-binding pr	96.87
2jeo_A	245	Uridine-cytidine kinase 1; UCK, transferase, ATP-b	96.87
2nq2_C	253	Hypothetical ABC transporter ATP-binding protein H	96.87
3lnc_A	231	Guanylate kinase, GMP kinase; ALS collaborative cr	96.86
2pt5_A	168	Shikimate kinase, SK; aromatic amino acid biosynth	96.86
1jjv_A	206	Dephospho-COA kinase; P-loop nucleotide-binding fo	96.86
2yz2_A	266	Putative ABC transporter ATP-binding protein TM_0;	96.84
2wwf_A	212	Thymidilate kinase, putative; transferase, malaria	96.84
2c95_A	196	Adenylate kinase 1; transferase, AP4A, nucleotide	96.83
1xjc_A	169	MOBB protein homolog; structural genomics, midwest	96.83
2qt1_A	207	Nicotinamide riboside kinase 1; non-protein kinase	96.82
2xb4_A	223	Adenylate kinase; ATP-binding, nucleotide-binding,	96.82
2pjz_A	263	Hypothetical protein ST1066; ATP binding protein,	96.81
4a74_A	231	DNA repair and recombination protein RADA; hydrola	96.8
4e22_A	252	Cytidylate kinase; P-loop, CMP/ATP binding, transf	96.8
1via_A	175	Shikimate kinase; structural genomics, transferase	96.79
1uf9_A	203	TT1252 protein; P-loop, nucleotide binding domain,	96.79
3n70_A	145	Transport activator; sigma-54, ntpase, PSI, MCSG,	96.79
1sxj_E	354	Activator 1 40 kDa subunit; clamp loader, processi	96.79
1lw7_A	365	Transcriptional regulator NADR; NMN, NMN adenylyl	96.78
3jvv_A	356	Twitching mobility protein; hexameric P-loop ATPas	96.77
3nh6_A	306	ATP-binding cassette SUB-family B member 6, mitoc;	96.76
1rj9_A	304	FTSY, signal recognition protein; SRP-GTPase domai	96.75
2kjq_A	149	DNAA-related protein; solution structure, NESG, st	96.75
2yvu_A	186	Probable adenylyl-sulfate kinase; transferase, str	96.74
1ak2_A	233	Adenylate kinase isoenzyme-2; nucleoside monophosp	96.72
1jbk_A	195	CLPB protein; beta barrel, chaperone; 1.80A {Esche	96.72
2pbr_A	195	DTMP kinase, thymidylate kinase; transferase, nucl	96.7
2p5t_B	253	PEZT; postsegregational killing system, phosphoryl	96.69
3fvq_A	359	Fe(3+) IONS import ATP-binding protein FBPC; nucle	96.69
2z0h_A	197	DTMP kinase, thymidylate kinase; ATP-binding, nucl	96.68
2bbs_A	290	Cystic fibrosis transmembrane conductance regulato	96.68
3tui_C	366	Methionine import ATP-binding protein METN; ABC-tr	96.67
3a4m_A	260	L-seryl-tRNA(SEC) kinase; P-loop motif, walker A m	96.67
1z47_A	355	CYSA, putative ABC-transporter ATP-binding protein	96.66
2ewv_A	372	Twitching motility protein PILT; pilus retraction	96.65
2bwj_A	199	Adenylate kinase 5; phosphoryl transfer reaction,	96.65
1sq5_A	308	Pantothenate kinase; P-loop, transferase; HET: PAU	96.65
2gza_A	361	Type IV secretion system protein VIRB11; ATPase, h	96.65
2yyz_A	359	Sugar ABC transporter, ATP-binding protein; sugar	96.64
3rlf_A	381	Maltose/maltodextrin import ATP-binding protein M;	96.64
2x8a_A	274	Nuclear valosin-containing protein-like; nuclear p	96.64
2f6r_A	281	COA synthase, bifunctional coenzyme A synthase; 18	96.63
1gtv_A	214	TMK, thymidylate kinase; transferase, transferase	96.63
2ze6_A	253	Isopentenyl transferase; crown GALL tumor, cytokin	96.63
2it1_A	362	362AA long hypothetical maltose/maltodextrin trans	96.63
2pt7_A	330	CAG-ALFA; ATPase, protein-protein complex, type IV	96.63
1ixz_A	254	ATP-dependent metalloprotease FTSH; AAA domain fol	96.62
3e70_C	328	DPA, signal recognition particle receptor; FTSY, S	96.61
1a7j_A	290	Phosphoribulokinase; transferase, calvin cycle; 2.	96.61
1v43_A	372	Sugar-binding transport ATP-binding protein; ATPas	96.59
1g29_1	372	MALK, maltose transport protein MALK; ATPase, acti	96.59
2vp4_A	230	Deoxynucleoside kinase; ATP-binding, DNA synthesis	96.58
3b9q_A	302	Chloroplast SRP receptor homolog, alpha subunit CP	96.58
1e6c_A	173	Shikimate kinase; phosphoryl transfer, ADP, shikim	96.57
3r20_A	233	Cytidylate kinase; structural genomics, seattle st	96.56
2pez_A	179	Bifunctional 3'-phosphoadenosine 5'- phosphosulfat	96.56
1p9r_A	418	General secretion pathway protein E; bacterial typ	96.55
3kta_A	182	Chromosome segregation protein SMC; structural mai	96.53
3umf_A	217	Adenylate kinase; rossmann fold, transferase; 2.05	96.52
2iyv_A	184	Shikimate kinase, SK; transferase, aromatic amino	96.49
4eaq_A	229	DTMP kinase, thymidylate kinase; structural genomi	96.49
1zuh_A	168	Shikimate kinase; alpha-beta protein, transferase;	96.48
2p65_A	187	Hypothetical protein PF08_0063; CLPB, malaria, str	96.47
1iy2_A	278	ATP-dependent metalloprotease FTSH; AAA domain fol	96.47
3d31_A	348	Sulfate/molybdate ABC transporter, ATP-binding pro	96.46
2w0m_A	235	SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus	96.46
4ido_A	457	Atlastin-1; GTPase, GTP/GDP binding, hydrolase; HE	96.44
2oap_1	511	GSPE-2, type II secretion system protein; hexameri	96.44
3gd7_A	390	Fusion complex of cystic fibrosis transmembrane co	96.43
1in4_A	334	RUVB, holliday junction DNA helicase RUVB; AAA+-cl	96.41
2og2_A	359	Putative signal recognition particle receptor; nuc	96.4
3bos_A	242	Putative DNA replication factor; P-loop containing	96.39
3crm_A	323	TRNA delta(2)-isopentenylpyrophosphate transferase	96.38
1m7g_A	211	Adenylylsulfate kinase; APS kinase, transferase, s	96.38
2npi_A	460	Protein CLP1; CLP1-PCF11 complex, ATP binding, ter	96.36
2w58_A	202	DNAI, primosome component (helicase loader); ATP-b	96.36
3nwj_A	250	ATSK2; P loop, shikimate, nucleoside monophosphate	96.35
1lv7_A	257	FTSH; alpha/beta domain, four helix bundle, hydrol	96.35
2yhs_A	503	FTSY, cell division protein FTSY; cell cycle, prot	96.34
1oxx_K	353	GLCV, glucose, ABC transporter, ATP binding protei	96.31
1ltq_A	301	Polynucleotide kinase; phosphatase, alpha/beta, P-	96.28
3d3q_A	340	TRNA delta(2)-isopentenylpyrophosphate transferase	96.27
1nij_A	318	Hypothetical protein YJIA; structural genomics, P-	96.27
2grj_A	192	Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosp	96.26
1cr0_A	296	DNA primase/helicase; RECA-type protein fold, tran	96.24
2cvh_A	220	DNA repair and recombination protein RADB; filamen	96.24
1n0w_A	243	DNA repair protein RAD51 homolog 1; DNA repair, ho	96.22
3ld9_A	223	DTMP kinase, thymidylate kinase; ssgcid, NIH, niai	96.22
1f2t_A	149	RAD50 ABC-ATPase; DNA double-strand break repair,	96.18
2obl_A	347	ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O	96.14
2qmh_A	205	HPR kinase/phosphorylase; V267F mutation, ATP-bind	96.14
3syl_A	309	Protein CBBX; photosynthesis, rubisco activase, AA	96.14
1njg_A	250	DNA polymerase III subunit gamma; rossman-like fol	96.14
3ake_A	208	Cytidylate kinase; CMP kinase, CMP complex, open c	96.13
1svm_A	377	Large T antigen; AAA+ fold, viral protein; HET: AT	96.1
3zvl_A	416	Bifunctional polynucleotide phosphatase/kinase; hy	96.08
3euj_A	483	Chromosome partition protein MUKB, linker; MUKB, M	96.07
1q3t_A	236	Cytidylate kinase; nucleotide monophosphate kinase	96.06
1yqt_A	538	RNAse L inhibitor; ATP-binding cassette, ribosome	96.05
3h4m_A	285	Proteasome-activating nucleotidase; ATPase, PAN, A	96.0
3b60_A	582	Lipid A export ATP-binding/permease protein MSBA;	96.0
3tqf_A	181	HPR(Ser) kinase; transferase, hydrolase; 2.80A {Co	96.0
3b9p_A	297	CG5977-PA, isoform A; AAA ATPase, ATP-binding, nuc	96.0
2qz4_A	262	Paraplegin; AAA+, SPG7, protease, ADP, structural	95.99
2dpy_A	438	FLII, flagellum-specific ATP synthase; beta barrel	95.97
3b5x_A	582	Lipid A export ATP-binding/permease protein MSBA;	95.94
1d2n_A	272	N-ethylmaleimide-sensitive fusion protein; hexamer	95.92
1tue_A	212	Replication protein E1; helicase, replication, E1E	95.92
2ga8_A	359	Hypothetical 39.9 kDa protein; YFR007W, YFH7, unkn	95.92
3t15_A	293	Ribulose bisphosphate carboxylase/oxygenase activ	95.9
1l8q_A	324	Chromosomal replication initiator protein DNAA; AA	95.9
2px0_A	296	Flagellar biosynthesis protein FLHF; SRP GTPase, f	95.89
3cf0_A	301	Transitional endoplasmic reticulum ATPase; AAA, P9	95.89
1p5z_B	263	DCK, deoxycytidine kinase; nucleoside kinase, P-lo	95.87
3ozx_A	538	RNAse L inhibitor; ATP binding cassette protein, h	95.86
1nlf_A	279	Regulatory protein REPA; replicative DNA helicase	95.86
3j16_B	608	RLI1P; ribosome recycling, translation, eukarya, r	95.86
3qf7_A	365	RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.	95.85
3gmt_A	230	Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucle	95.84
2yl4_A	595	ATP-binding cassette SUB-family B member 10, mitoc	95.82
1vma_A	306	Cell division protein FTSY; TM0570, structural gen	95.82
3foz_A	316	TRNA delta(2)-isopentenylpyrophosphate transferas;	95.82
3qf4_B	598	Uncharacterized ABC transporter ATP-binding prote	95.81
4fcw_A	311	Chaperone protein CLPB; AAA domain; HET: ADP; 2.35	95.81
2ocp_A	241	DGK, deoxyguanosine kinase; protein-nucleotide com	95.8
2qby_A	386	CDC6 homolog 1, cell division control protein 6 ho	95.78
3bk7_A	607	ABC transporter ATP-binding protein; ABC ATPase, i	95.74
2dr3_A	247	UPF0273 protein PH0284; RECA superfamily ATPase, h	95.73
1fnn_A	389	CDC6P, cell division control protein 6; ORC1, AAA	95.73
1ofh_A	310	ATP-dependent HSL protease ATP-binding subunit HSL	95.71
4a82_A	578	Cystic fibrosis transmembrane conductance regulat;	95.71
3exa_A	322	TRNA delta(2)-isopentenylpyrophosphate transferase	95.71
3co5_A	143	Putative two-component system transcriptional RES	95.7
3ozx_A	538	RNAse L inhibitor; ATP binding cassette protein, h	95.67
3qf4_A	587	ABC transporter, ATP-binding protein; multidrug tr	95.66
1yqt_A	538	RNAse L inhibitor; ATP-binding cassette, ribosome	95.62
3a8t_A	339	Adenylate isopentenyltransferase; rossmann fold pr	95.62
1sxj_C	340	Activator 1 40 kDa subunit; clamp loader, processi	95.59
3bk7_A	607	ABC transporter ATP-binding protein; ABC ATPase, i	95.57
2h92_A	219	Cytidylate kinase; rossmann fold, transferase; HET	95.56
3qks_A	203	DNA double-strand break repair RAD50 ATPase; RECA-	95.52
1c9k_A	180	COBU, adenosylcobinamide kinase; alpha/beta struct	95.52
1xwi_A	322	SKD1 protein; VPS4B, AAA ATPase, protein transport	95.5
4edh_A	213	DTMP kinase, thymidylate kinase; structural genomi	95.5
2qen_A	350	Walker-type ATPase; unknown function; HET: ADP; 2.	95.5
2qgz_A	308	Helicase loader, putative primosome component; str	95.49
1pzn_A	349	RAD51, DNA repair and recombination protein RAD51,	95.47
3eie_A	322	Vacuolar protein sorting-associated protein 4; AAA	95.47
3j16_B	608	RLI1P; ribosome recycling, translation, eukarya, r	95.45
3pfi_A	338	Holliday junction ATP-dependent DNA helicase RUVB;	95.44
2v1u_A	387	Cell division control protein 6 homolog; DNA repli	95.43
3pxg_A	468	Negative regulator of genetic competence CLPC/MEC;	95.42
3u61_B	324	DNA polymerase accessory protein 44; AAA+, ATP hyd	95.41
1sxj_D	353	Activator 1 41 kDa subunit; clamp loader, processi	95.38
3v9p_A	227	DTMP kinase, thymidylate kinase; ssgcid, STRU geno	95.37
2r62_A	268	Cell division protease FTSH homolog; ATPase domain	95.37
2fna_A	357	Conserved hypothetical protein; structural genomic	95.36
2bjv_A	265	PSP operon transcriptional activator; AAA, transcr	95.36
1ko7_A	314	HPR kinase/phosphatase; protein kinase, phosphotra	95.33
3uk6_A	368	RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding	95.33
2iw3_A	986	Elongation factor 3A; acetylation, ATP-binding, pr	95.3
3cr8_A	552	Sulfate adenylyltranferase, adenylylsulfate kinase	95.28
2r8r_A	228	Sensor protein; KDPD, PFAM02702, MCSG, structural	95.27
1tf7_A	525	KAIC; homohexamer, hexamer, circadian clock protei	95.26
1um8_A	376	ATP-dependent CLP protease ATP-binding subunit CL;	95.24
4ag6_A	392	VIRB4 ATPase, type IV secretory pathway VIRB4 comp	95.21
2z4s_A	440	Chromosomal replication initiator protein DNAA; AA	95.21
3d8b_A	357	Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, s	95.19

>4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A*

Probab=100.00  E-value=8.5e-43  Score=248.44  Aligned_cols=165  Identities=32%  Similarity=0.524  Sum_probs=139.8

Q ss_pred             CceeEEEEEcCCCCCHHHHHHHHhhCCCCCCCCCcee-eeeeEEEEECCeEEEEEEEeCCCccccccccccCcCCCcEEE
Q 036449            4 SRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVF-DNFSANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFI   82 (197)
Q Consensus         4 ~~~~~i~v~G~~~~GKstli~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i   82 (197)
                      .+.+||+|+|.+|||||||+++|..+.|...+.+|.+ +.......+++..+.+++|||+|+++|..++..+++++++++
T Consensus        11 ~k~~KivlvGd~~VGKTsLi~r~~~~~f~~~~~~Tig~d~~~k~~~~~~~~v~l~iwDtaGqe~~~~l~~~~~~~a~~~i   90 (216)
T 4dkx_A           11 LRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTIRLQLWDTAGLERFRSLIPSYIRDSAAAV   90 (216)
T ss_dssp             --CEEEEEECSTTSSHHHHHHHHHHSCCC----------CEEEEEECSSCEEEEEEECCSCTTTCGGGHHHHHTTCSEEE
T ss_pred             CCcEEEEEECcCCcCHHHHHHHHHhCCCCCCcCCccceEEEEEEEEecceEEEEEEEECCCchhhhhHHHHHhccccEEE
Confidence            4668999999999999999999999999999999986 445667778888999999999999999999999999999999


Q ss_pred             EEEeCCCchhHHHHHHHHHHHHhhhC-CCCCEEEEeeCCcccCCcccccCCCCCCcccHHHHHHHHHHhCCCceEEeccC
Q 036449           83 LAFSLISKASYENVSKKWIPELKHYA-PGVPIILVGTKLDLRDDKQFFIDHPGAVPISTAQGEELRKLIGAPAYIECSSK  161 (197)
Q Consensus        83 ~v~d~~~~~s~~~~~~~~~~~i~~~~-~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~  161 (197)
                      +|||++++++|+.+ ..|+..+.... +++|++|||||+|+.+.+.          ++.++++++++.+++ +|++|||+
T Consensus        91 lv~di~~~~Sf~~i-~~~~~~i~~~~~~~~piilVgNK~Dl~~~r~----------V~~~e~~~~a~~~~~-~~~e~SAk  158 (216)
T 4dkx_A           91 VVYDITNVNSFQQT-TKWIDDVRTERGSDVIIMLVGNKTDLADKRQ----------VSIEEGERKAKELNV-MFIETSAK  158 (216)
T ss_dssp             EEEETTCHHHHHTH-HHHHHHHHHHHTTSSEEEEEEECTTCGGGCC----------SCHHHHHHHHHHHTC-EEEEEBTT
T ss_pred             EEeecchhHHHHHH-HHHHHHHHHhcCCCCeEEEEeeccchHhcCc----------ccHHHHhhHHHHhCC-eeEEEeCC
Confidence            99999999999999 77887777655 7899999999999987654          889999999999998 89999999


Q ss_pred             CCCCHHHHHHHHHHHHcCC
Q 036449          162 TQQNVKAVFDAAIRVVLQP  180 (197)
Q Consensus       162 ~~~~i~~l~~~i~~~~~~~  180 (197)
                      +|.||+++|+.|++.+...
T Consensus       159 tg~nV~e~F~~i~~~i~~~  177 (216)
T 4dkx_A          159 AGYNVKQLFRRVAAALPGM  177 (216)
T ss_dssp             TTBSHHHHHHHHHHHC---
T ss_pred             CCcCHHHHHHHHHHHHHhh
Confidence            9999999999999987653

>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}

Probab=100.00  E-value=2.4e-39  Score=230.76  Aligned_cols=195  Identities=77%  Similarity=1.240  Sum_probs=154.0

Q ss_pred             CCCCceeEEEEEcCCCCCHHHHHHHHhhCCCCCCCCCceeeeeeEEEEECCeEEEEEEEeCCCccccccccccCcCCCcE
Q 036449            1 MSASRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGADV   80 (197)
Q Consensus         1 m~~~~~~~i~v~G~~~~GKstli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~   80 (197)
                      |+..+.++|+++|.+|+|||||++++..+.+...+.+|.+..+...+.+++..+.+++||+||++.|..++..++.++|+
T Consensus         4 m~~~~~~ki~i~G~~~~GKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~   83 (212)
T 2j0v_A            4 MSVSKFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVAVDGQIVNLGLWDTAGQEDYSRLRPLSYRGADI   83 (212)
T ss_dssp             CSCCCEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCSSCCCEEEEEECSSCEEEEEEECCCCCCCCCC--CGGGTTCSE
T ss_pred             CCcCceEEEEEECCCCCCHHHHHHHHhcCCCCccCCCccceeEEEEEEECCEEEEEEEEECCCcHHHHHHHHhhccCCCE
Confidence            77888999999999999999999999999998888888887777777788888999999999999999999999999999


Q ss_pred             EEEEEeCCCchhHHHHHHHHHHHHhhhCCCCCEEEEeeCCcccCCcccccCCCCCCcccHHHHHHHHHHhCCCceEEecc
Q 036449           81 FILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPISTAQGEELRKLIGAPAYIECSS  160 (197)
Q Consensus        81 ~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa  160 (197)
                      +|+|||++++++++.+...|+..+....++.|+++|+||+|+.+.......  ....+..+++..++..++..+++++||
T Consensus        84 ~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~--~~~~v~~~~~~~~~~~~~~~~~~~~Sa  161 (212)
T 2j0v_A           84 FVLAFSLISKASYENVLKKWMPELRRFAPNVPIVLVGTKLDLRDDKGYLAD--HTNVITSTQGEELRKQIGAAAYIECSS  161 (212)
T ss_dssp             EEEEEETTCHHHHHHHHHTHHHHHHHHCTTCCEEEEEECHHHHTCHHHHHT--CSSCCCHHHHHHHHHHHTCSEEEECCT
T ss_pred             EEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEeCHHhhhCcccccc--ccCCCCHHHHHHHHHHcCCceEEEccC
Confidence            999999999999999855899999888789999999999999765431111  111346788889999998668999999


Q ss_pred             CCCCCHHHHHHHHHHHHcCCCchhh----hhhccccccccC
Q 036449          161 KTQQNVKAVFDAAIRVVLQPPKTKK----KKNKAQKACSIL  197 (197)
Q Consensus       161 ~~~~~i~~l~~~i~~~~~~~~~~~~----~~~~~~~~c~~~  197 (197)
                      ++|.|++++|++|++.+.+....+.    ++++++..|+++
T Consensus       162 ~~g~gi~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~c~~~  202 (212)
T 2j0v_A          162 KTQQNVKAVFDTAIKVVLQPPRRKEVPRRRKNHRRSGCSIA  202 (212)
T ss_dssp             TTCTTHHHHHHHHHHHHHCC---------------------
T ss_pred             CCCCCHHHHHHHHHHHHhhhhhhcccccccccccCCCcEEe
Confidence            9999999999999999988765543    334444578764

>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}

Probab=100.00  E-value=1.1e-37  Score=220.44  Aligned_cols=181  Identities=28%  Similarity=0.491  Sum_probs=143.6

Q ss_pred             CCCCceeEEEEEcCCCCCHHHHHHHHhhCCCCCCCCCceeeeeeEEEEECCeEEEEEEEeCCCccccccccccCcCCCcE
Q 036449            1 MSASRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGADV   80 (197)
Q Consensus         1 m~~~~~~~i~v~G~~~~GKstli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~   80 (197)
                      |+..+.+||+++|.+|||||||++++..+.+...+.++.+..+.....+++..+.+.+||+||++.+...+..++..+|+
T Consensus        19 ~~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~   98 (201)
T 3oes_A           19 MPLVRYRKVVILGYRCVGKTSLAHQFVEGEFSEGYDPTVENTYSKIVTLGKDEFHLHLVDTAGQDEYSILPYSFIIGVHG   98 (201)
T ss_dssp             ----CEEEEEEEESTTSSHHHHHHHHHHSCCCSCCCCCSEEEEEEEEC----CEEEEEEEECCCCTTCCCCGGGTTTCCE
T ss_pred             CCCCCcEEEEEECCCCcCHHHHHHHHHhCCCCCCCCCccceEEEEEEEECCEEEEEEEEECCCccchHHHHHHHHhcCCE
Confidence            56678899999999999999999999999998888888887776666677777889999999999999999999999999


Q ss_pred             EEEEEeCCCchhHHHHHHHHHHHHhhhC--CCCCEEEEeeCCcccCCcccccCCCCCCcccHHHHHHHHHHhCCCceEEe
Q 036449           81 FILAFSLISKASYENVSKKWIPELKHYA--PGVPIILVGTKLDLRDDKQFFIDHPGAVPISTAQGEELRKLIGAPAYIEC  158 (197)
Q Consensus        81 ~i~v~d~~~~~s~~~~~~~~~~~i~~~~--~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  158 (197)
                      +|+|||++++++++.+ ..|+..+....  ++.|+++|+||+|+.+.+.          +..+++..++...+. +++++
T Consensus        99 ~i~v~d~~~~~s~~~~-~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~----------v~~~~~~~~~~~~~~-~~~~~  166 (201)
T 3oes_A           99 YVLVYSVTSLHSFQVI-ESLYQKLHEGHGKTRVPVVLVGNKADLSPERE----------VQAVEGKKLAESWGA-TFMES  166 (201)
T ss_dssp             EEEEEETTCHHHHHHH-HHHHHHHHC-----CCCEEEEEECTTCGGGCC----------SCHHHHHHHHHHHTC-EEEEC
T ss_pred             EEEEEeCCCHHHHHHH-HHHHHHHHHhcCCCCCCEEEEEECccCccccc----------cCHHHHHHHHHHhCC-eEEEE
Confidence            9999999999999998 68888877653  5799999999999976544          677888999999998 99999


Q ss_pred             ccCCCCCHHHHHHHHHHHHcCCCchhhhhhccccccccC
Q 036449          159 SSKTQQNVKAVFDAAIRVVLQPPKTKKKKNKAQKACSIL  197 (197)
Q Consensus       159 sa~~~~~i~~l~~~i~~~~~~~~~~~~~~~~~~~~c~~~  197 (197)
                      ||++|.|++++|++|.+.+.......    +++..|.+|
T Consensus       167 Sa~~~~~v~~l~~~l~~~i~~~~~~~----~~~~~c~l~  201 (201)
T 3oes_A          167 SARENQLTQGIFTKVIQEIARVENSY----GQERRCHLM  201 (201)
T ss_dssp             CTTCHHHHHHHHHHHHHHHHHC-----------------
T ss_pred             eCCCCCCHHHHHHHHHHHHHhhhhhh----ccccccccC
Confidence            99999999999999999987664443    345558876

>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*

Probab=100.00  E-value=1.1e-36  Score=214.06  Aligned_cols=172  Identities=44%  Similarity=0.811  Sum_probs=154.4

Q ss_pred             CCceeEEEEEcCCCCCHHHHHHHHhhCCCCCCCCCceeeeeeEEEEECCeEEEEEEEeCCCccccccccccCcCCCcEEE
Q 036449            3 ASRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFI   82 (197)
Q Consensus         3 ~~~~~~i~v~G~~~~GKstli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i   82 (197)
                      ..+.+||+++|.+|+|||||++++..+.+...+.+|.+..+.....+++..+.+++||+||++.+...+..++.++|++|
T Consensus        20 ~~~~~ki~~vG~~~~GKSsl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i   99 (194)
T 3reg_A           20 GKKALKIVVVGDGAVGKTCLLLAFSKGEIPTAYVPTVFENFSHVMKYKNEEFILHLWDTAGQEEYDRLRPLSYADSDVVL   99 (194)
T ss_dssp             -CEEEEEEEECSTTSSHHHHHHHHHHSCCCSSCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGTTTGGGGCTTCSEEE
T ss_pred             cceeeEEEEECcCCCCHHHHHHHHhcCCCCCccCCeeeeeeEEEEEECCEEEEEEEEECCCcHHHHHHhHhhccCCcEEE
Confidence            35679999999999999999999999999888899998888878888999999999999999999999999999999999


Q ss_pred             EEEeCCCchhHHHHHHHHHHHHhhhCCCCCEEEEeeCCcccCCcccccCCCCCCcccHHHHHHHHHHhCCCceEEeccCC
Q 036449           83 LAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPISTAQGEELRKLIGAPAYIECSSKT  162 (197)
Q Consensus        83 ~v~d~~~~~s~~~~~~~~~~~i~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~  162 (197)
                      +|||++++++++.+...|+..+....++.|+++|+||+|+.+..        ...+..+++..+++.++...++++||++
T Consensus       100 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~Sa~~  171 (194)
T 3reg_A          100 LCFAVNNRTSFDNISTKWEPEIKHYIDTAKTVLVGLKVDLRKDG--------SDDVTKQEGDDLCQKLGCVAYIEASSVA  171 (194)
T ss_dssp             EEEETTCHHHHHHHHHTHHHHHHHHCTTSEEEEEEECGGGCCTT--------TTCCCHHHHHHHHHHHTCSCEEECBTTT
T ss_pred             EEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhhccCC--------CCcccHHHHHHHHHhcCCCEEEEeecCC
Confidence            99999999999997678999999888899999999999997532        1236788899999999984599999999


Q ss_pred             CCCHHHHHHHHHHHHcCCCc
Q 036449          163 QQNVKAVFDAAIRVVLQPPK  182 (197)
Q Consensus       163 ~~~i~~l~~~i~~~~~~~~~  182 (197)
                      |.|++++|++|.+.+..++.
T Consensus       172 ~~gi~~l~~~l~~~i~~~~~  191 (194)
T 3reg_A          172 KIGLNEVFEKSVDCIFSNKP  191 (194)
T ss_dssp             TBSHHHHHHHHHHHHHCSCC
T ss_pred             CCCHHHHHHHHHHHHHhcCC
Confidence            99999999999999887654

>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*

Probab=100.00  E-value=6.6e-37  Score=212.89  Aligned_cols=171  Identities=32%  Similarity=0.443  Sum_probs=151.2

Q ss_pred             CCCCceeEEEEEcCCCCCHHHHHHHHhhCCCCCCCCCceeeeeeEEEEECCeEEEEEEEeCCCccccccccccCcCCCcE
Q 036449            1 MSASRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGADV   80 (197)
Q Consensus         1 m~~~~~~~i~v~G~~~~GKstli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~   80 (197)
                      |+..+.++|+++|.+|+|||||++++..+.+...+.++.+..+.....+++..+.+++||+||++.+...+..++..+|+
T Consensus         1 m~~~~~~ki~~~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~   80 (181)
T 3t5g_A            1 MPQSKSRKIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTFTKLITVNGQEYHLQLVDTAGQDEYSIFPQTYSIDING   80 (181)
T ss_dssp             -CCEEEEEEEEEESTTSSHHHHHHHHHHSSCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCCCCTTCCCCGGGTTTCSE
T ss_pred             CCCCceEEEEEECcCCCCHHHHHHHHHcCCCCCCCCCCccccEEEEEEECCEEEEEEEEeCCCchhhhHHHHHHHhcCCE
Confidence            78889999999999999999999999999998888899887777778889988999999999999999999999999999


Q ss_pred             EEEEEeCCCchhHHHHHHHHHHHHhhhC--CCCCEEEEeeCCcccCCcccccCCCCCCcccHHHHHHHHHHhCCCceEEe
Q 036449           81 FILAFSLISKASYENVSKKWIPELKHYA--PGVPIILVGTKLDLRDDKQFFIDHPGAVPISTAQGEELRKLIGAPAYIEC  158 (197)
Q Consensus        81 ~i~v~d~~~~~s~~~~~~~~~~~i~~~~--~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  158 (197)
                      +++|||++++++++.+ ..|+..+....  ++.|+++|+||+|+.+.+.          +..++++.+++.++. +++++
T Consensus        81 ~i~v~d~~~~~s~~~~-~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~----------~~~~~~~~~~~~~~~-~~~~~  148 (181)
T 3t5g_A           81 YILVYSVTSIKSFEVI-KVIHGKLLDMVGKVQIPIMLVGNKKDLHMERV----------ISYEEGKALAESWNA-AFLES  148 (181)
T ss_dssp             EEEEEETTCHHHHHHH-HHHHHHHHHHC----CCEEEEEECTTCTTTCC----------SCHHHHHHHHHHTTC-EEEEC
T ss_pred             EEEEEECCCHHHHHHH-HHHHHHHHHhcCCCCCCEEEEEECccchhcce----------ecHHHHHHHHHHhCC-cEEEE
Confidence            9999999999999998 67887776654  5899999999999976544          778889999999998 89999


Q ss_pred             ccCCCCCHHHHHHHHHHHHcCCCch
Q 036449          159 SSKTQQNVKAVFDAAIRVVLQPPKT  183 (197)
Q Consensus       159 sa~~~~~i~~l~~~i~~~~~~~~~~  183 (197)
                      ||+++.|++++|++|++.+......
T Consensus       149 Sa~~~~~v~~l~~~l~~~~~~~~~~  173 (181)
T 3t5g_A          149 SAKENQTAVDVFRRIILEAEKMDGA  173 (181)
T ss_dssp             CTTSHHHHHHHHHHHHHHHHTC---
T ss_pred             ecCCCCCHHHHHHHHHHHHHHhcCC
Confidence            9999999999999999999877543

>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*

Probab=100.00  E-value=2.2e-37  Score=216.45  Aligned_cols=181  Identities=35%  Similarity=0.587  Sum_probs=148.3

Q ss_pred             CceeEEEEEcCCCCCHHHHHHHHhhCCCCCCCCCceeeeeeEEEEECCeEEEEEEEeCCCccccccccccCcCCCcEEEE
Q 036449            4 SRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFIL   83 (197)
Q Consensus         4 ~~~~~i~v~G~~~~GKstli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~   83 (197)
                      ++.++|+++|.+|||||||++++.++.+...+.++....+.....+++..+.+.+||+||++.+...+..++..+|++++
T Consensus         2 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i~   81 (189)
T 4dsu_A            2 STEYKLVVVGADGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLC   81 (189)
T ss_dssp             CEEEEEEEECCTTSSHHHHHHHHHHSSCCCCCCTTCCEEEEEEEEETTEEEEEEEEECCCC---CTTHHHHHHHCSEEEE
T ss_pred             CcEEEEEEECCCCCCHHHHHHHHHhCCCCCCCCCCchheEEEEEEECCcEEEEEEEECCCcHHHHHHHHHHHhcCCEEEE
Confidence            56799999999999999999999999998888888887777888889988999999999999999999999999999999


Q ss_pred             EEeCCCchhHHHHHHHHHHHHhhhC--CCCCEEEEeeCCcccCCcccccCCCCCCcccHHHHHHHHHHhCCCceEEeccC
Q 036449           84 AFSLISKASYENVSKKWIPELKHYA--PGVPIILVGTKLDLRDDKQFFIDHPGAVPISTAQGEELRKLIGAPAYIECSSK  161 (197)
Q Consensus        84 v~d~~~~~s~~~~~~~~~~~i~~~~--~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~  161 (197)
                      |||++++.+++.+ ..|+..+....  ++.|+++|+||+|+.+..           ...+++..++...+. +++++||+
T Consensus        82 v~d~~~~~s~~~~-~~~~~~~~~~~~~~~~p~i~v~nK~Dl~~~~-----------~~~~~~~~~~~~~~~-~~~~~Sa~  148 (189)
T 4dsu_A           82 VFAINNTKSFEDI-HHYREQIKRVKDSEDVPMVLVGNKCDLPSRT-----------VDTKQAQDLARSYGI-PFIETSAK  148 (189)
T ss_dssp             EEETTCHHHHHHH-HHHHHHHHHHTTCSCCCEEEEEECTTSSSCS-----------SCHHHHHHHHHHHTC-CEEECCTT
T ss_pred             EEECCCHHHHHHH-HHHHHHHHHhcCCCCCcEEEEEECccCcccc-----------cCHHHHHHHHHHcCC-eEEEEeCC
Confidence            9999999999998 67777777644  589999999999997432           567788899999998 89999999


Q ss_pred             CCCCHHHHHHHHHHHHcCCCch-----hhhhhccccccccC
Q 036449          162 TQQNVKAVFDAAIRVVLQPPKT-----KKKKNKAQKACSIL  197 (197)
Q Consensus       162 ~~~~i~~l~~~i~~~~~~~~~~-----~~~~~~~~~~c~~~  197 (197)
                      +|.|++++|++|.+.+......     +.++++++.+|.||
T Consensus       149 ~g~gi~~l~~~l~~~~~~~~~~~~~~~~~~~kk~~~~c~i~  189 (189)
T 4dsu_A          149 TRQGVDDAFYTLVREIRKHKEKMSKDGKKKKKKSKTKCVIM  189 (189)
T ss_dssp             TCTTHHHHHHHHHHHHHHHHHHHHHCSSTTCCC--------
T ss_pred             CCCCHHHHHHHHHHHHHHhhhhcccccccccccccceeeeC
Confidence            9999999999999988765432     23455566778876

>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C

Probab=100.00  E-value=2.2e-37  Score=215.30  Aligned_cols=179  Identities=96%  Similarity=1.459  Sum_probs=134.9

Q ss_pred             CCCCceeEEEEEcCCCCCHHHHHHHHhhCCCCCCCCCceeeeeeEEEEECCeEEEEEEEeCCCccccccccccCcCCCcE
Q 036449            1 MSASRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGADV   80 (197)
Q Consensus         1 m~~~~~~~i~v~G~~~~GKstli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~   80 (197)
                      |++.+.+||+++|.+|+|||||++++..+.+...+.+|.+..+.....+++..+.+++||+||++++...+..++.++|+
T Consensus         3 ~~~~~~~ki~v~G~~~~GKssl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~   82 (182)
T 3bwd_D            3 MSASRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGATVNLGLWDTAGQEDYNRLRPLSYRGADV   82 (182)
T ss_dssp             ----CCCEEEEECSTTSSHHHHHHHHHHSCCC----------CBCCCC-------CEEECCCC-CTTTTTGGGGGTTCSE
T ss_pred             CCCCceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCeeeeeEEEEEEECCEEEEEEEEECCCChhhhhhHHhhccCCCE
Confidence            67788999999999999999999999999988888888876665555566777889999999999999999999999999


Q ss_pred             EEEEEeCCCchhHHHHHHHHHHHHhhhCCCCCEEEEeeCCcccCCcccccCCCCCCcccHHHHHHHHHHhCCCceEEecc
Q 036449           81 FILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPISTAQGEELRKLIGAPAYIECSS  160 (197)
Q Consensus        81 ~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa  160 (197)
                      +++|||++++.+++.+...|+..+....++.|+++|+||+|+.+.+...........+..+++..+++.++..+++++||
T Consensus        83 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa  162 (182)
T 3bwd_D           83 FILAFSLISKASYENVSKKWIPELKHYAPGVPIVLVGTKLDLRDDKQFFIDHPGAVPITTVQGEELKKLIGAPAYIECSS  162 (182)
T ss_dssp             EEEEEETTCHHHHHHHHHTHHHHHHHHCTTCCEEEEEECHHHHTCHHHHHHC--CCCCCHHHHHHHHHHHTCSEEEECCT
T ss_pred             EEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEechhhhcCcccccccccCCCCCHHHHHHHHHHcCCCEEEEEEC
Confidence            99999999999999985589999988778899999999999976543111112223356788889999998668999999


Q ss_pred             CCCCCHHHHHHHHHHHHcC
Q 036449          161 KTQQNVKAVFDAAIRVVLQ  179 (197)
Q Consensus       161 ~~~~~i~~l~~~i~~~~~~  179 (197)
                      ++|.|++++|++|.+.+.+
T Consensus       163 ~~~~gi~~l~~~l~~~i~~  181 (182)
T 3bwd_D          163 KSQENVKGVFDAAIRVVLQ  181 (182)
T ss_dssp             TTCTTHHHHHHHHHHHHSC
T ss_pred             CCCCCHHHHHHHHHHHHhc
Confidence            9999999999999998765

>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8

Probab=100.00  E-value=3.7e-36  Score=211.39  Aligned_cols=177  Identities=54%  Similarity=0.999  Sum_probs=151.9

Q ss_pred             CCceeEEEEEcCCCCCHHHHHHHHhhCCCCCCCCCceeeeeeEEEEECCeEEEEEEEeCCCccccccccccCcCCCcEEE
Q 036449            3 ASRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFI   82 (197)
Q Consensus         3 ~~~~~~i~v~G~~~~GKstli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i   82 (197)
                      +.+.++|+++|.+|+|||||++++..+.+...+.+|.+..+...+.+++..+.+.+||+||++++...+..++.++|++|
T Consensus        15 ~~~~~ki~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i   94 (194)
T 2atx_A           15 GALMLKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVFDHYAVSVTVGGKQYLLGLYDTAGQEDYDRLRPLSYPMTDVFL   94 (194)
T ss_dssp             EEEEEEEEEEECTTSSHHHHHHHHHHSSCCCSCCCSSCCCEEEEEESSSCEEEEEEECCCCSSSSTTTGGGGCTTCSEEE
T ss_pred             CCceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEECCEEEEEEEEECCCCcchhHHHHHhcCCCCEEE
Confidence            34679999999999999999999999999888888887777777777888899999999999999999999999999999


Q ss_pred             EEEeCCCchhHHHHHHHHHHHHhhhCCCCCEEEEeeCCcccCCcccc--cCCCCCCcccHHHHHHHHHHhCCCceEEecc
Q 036449           83 LAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLRDDKQFF--IDHPGAVPISTAQGEELRKLIGAPAYIECSS  160 (197)
Q Consensus        83 ~v~d~~~~~s~~~~~~~~~~~i~~~~~~~~~ivv~nK~D~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa  160 (197)
                      +|||++++++++.+...|+..+....++.|+++|+||+|+.+.....  ......+.+..+++..+++..+..+++++||
T Consensus        95 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa  174 (194)
T 2atx_A           95 ICFSVVNPASFQNVKEEWVPELKEYAPNVPFLLIGTQIDLRDDPKTLARLNDMKEKPICVEQGQKLAKEIGACCYVECSA  174 (194)
T ss_dssp             EEEETTCHHHHHHHHHTHHHHHHHHSTTCCEEEEEECTTSTTCHHHHHHHTTTTCCCCCHHHHHHHHHHHTCSCEEECCT
T ss_pred             EEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhhcccccchhhcccccCcccCHHHHHHHHHHcCCcEEEEeeC
Confidence            99999999999998558999998887899999999999997642110  0111123467788899999998768999999


Q ss_pred             CCCCCHHHHHHHHHHHHcC
Q 036449          161 KTQQNVKAVFDAAIRVVLQ  179 (197)
Q Consensus       161 ~~~~~i~~l~~~i~~~~~~  179 (197)
                      ++|.|++++|++|.+.+..
T Consensus       175 ~~g~gi~~l~~~l~~~i~~  193 (194)
T 2atx_A          175 LTQKGLKTVFDEAIIAILT  193 (194)
T ss_dssp             TTCTTHHHHHHHHHHHHHC
T ss_pred             CCCCCHHHHHHHHHHHHhc
Confidence            9999999999999998764

>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}

Probab=100.00  E-value=1e-36  Score=215.96  Aligned_cols=165  Identities=32%  Similarity=0.557  Sum_probs=147.4

Q ss_pred             CceeEEEEEcCCCCCHHHHHHHHhhCCCCCCCCCceeeeeeEEEEECCeEEEEEEEeCCCccccccccccCcCCCcEEEE
Q 036449            4 SRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFIL   83 (197)
Q Consensus         4 ~~~~~i~v~G~~~~GKstli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~   83 (197)
                      .+.++|+++|.+|||||||++++..+.+...+.++.+..+...+.+++..+.+.+||+||++.+...+..++..+|++++
T Consensus        12 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~i~   91 (206)
T 2bov_A           12 LALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGEGFLC   91 (206)
T ss_dssp             CCEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCTTCCEEEEEEEEETTEEEEEEEEECCCTTCCHHHHHHHHHHCSEEEE
T ss_pred             CceEEEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceEEEEEEEECCEEEEEEEEcCCChhhhHHHHHHHHhhCCEEEE
Confidence            45699999999999999999999999988888888887777777888888899999999999999999999999999999


Q ss_pred             EEeCCCchhHHHHHHHHHHHHhhhC--CCCCEEEEeeCCcccCCcccccCCCCCCcccHHHHHHHHHHhCCCceEEeccC
Q 036449           84 AFSLISKASYENVSKKWIPELKHYA--PGVPIILVGTKLDLRDDKQFFIDHPGAVPISTAQGEELRKLIGAPAYIECSSK  161 (197)
Q Consensus        84 v~d~~~~~s~~~~~~~~~~~i~~~~--~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~  161 (197)
                      |||++++++++.+ ..|+..+....  .+.|+++|+||+|+.+.+.          +..+++..++..++. +++++||+
T Consensus        92 v~d~~~~~s~~~~-~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~----------~~~~~~~~~~~~~~~-~~~~~Sa~  159 (206)
T 2bov_A           92 VFSITEMESFAAT-ADFREQILRVKEDENVPFLLVGNKSDLEDKRQ----------VSVEEAKNRAEQWNV-NYVETSAK  159 (206)
T ss_dssp             EEETTCHHHHHHH-HHHHHHHHHHTTCSCCCEEEEEECTTCGGGCC----------SCHHHHHHHHHHHTC-EEEEECTT
T ss_pred             EEECCCHHHHHHH-HHHHHHHHHhcCCCCCCEEEEEeccCcccccc----------ccHHHHHHHHHHhCC-eEEEEeCC
Confidence            9999999999998 78888887765  3899999999999976543          667888899999998 89999999


Q ss_pred             CCCCHHHHHHHHHHHHcCC
Q 036449          162 TQQNVKAVFDAAIRVVLQP  180 (197)
Q Consensus       162 ~~~~i~~l~~~i~~~~~~~  180 (197)
                      +|.|++++|++|++.+...
T Consensus       160 ~g~gi~~l~~~l~~~i~~~  178 (206)
T 2bov_A          160 TRANVDKVFFDLMREIRAR  178 (206)
T ss_dssp             TCTTHHHHHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHHc
Confidence            9999999999999987653

>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*

Probab=100.00  E-value=2.5e-36  Score=215.45  Aligned_cols=180  Identities=35%  Similarity=0.639  Sum_probs=150.4

Q ss_pred             CceeEEEEEcCCCCCHHHHHHHHhhCCCCCCCCCceeeeeeEEEEECCeEEEEEEEeCCCccccccccccCcCCCcEEEE
Q 036449            4 SRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFIL   83 (197)
Q Consensus         4 ~~~~~i~v~G~~~~GKstli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~   83 (197)
                      .+.+||+++|.+|||||||+++|..+.+...+.+|.+..+.....+++..+.+.+||+||++.+..++..++.++|++|+
T Consensus        25 ~~~~ki~vvG~~~vGKSsL~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~  104 (214)
T 3q3j_B           25 VARCKLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENYTACLETEEQRVELSLWDTSGSPYYDNVRPLCYSDSDAVLL  104 (214)
T ss_dssp             --CEEEEEECSTTSSHHHHHHHHHHSCCCSSCCCCSEEEEEEEEEC--CEEEEEEEEECCSGGGTTTGGGGCTTCSEEEE
T ss_pred             cceEEEEEECcCCCCHHHHHHHHhcCCCCCCcCCeeeeeEEEEEEECCEEEEEEEEECCCCHhHHHHHHHHcCCCeEEEE
Confidence            45699999999999999999999999999888999988887777788888999999999999999999999999999999


Q ss_pred             EEeCCCchhHHHHHHHHHHHHhhhCCCCCEEEEeeCCcccCCcccc--cCCCCCCcccHHHHHHHHHHhCCCceEEeccC
Q 036449           84 AFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLRDDKQFF--IDHPGAVPISTAQGEELRKLIGAPAYIECSSK  161 (197)
Q Consensus        84 v~d~~~~~s~~~~~~~~~~~i~~~~~~~~~ivv~nK~D~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~  161 (197)
                      |||++++++++.+...|+..+....++.|+++|+||+|+.+.....  ......+.+..+++..+++.+++.+|+++||+
T Consensus       105 v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~SA~  184 (214)
T 3q3j_B          105 CFDISRPETVDSALKKWRTEILDYCPSTRVLLIGCKTDLRTDLSTLMELSHQKQAPISYEQGCAIAKQLGAEIYLEGSAF  184 (214)
T ss_dssp             EEETTCTHHHHHHHTHHHHHHHHHCTTSEEEEEEECGGGGGCHHHHHHHHHTTCCCCCHHHHHHHHHHHTCSEEEECCTT
T ss_pred             EEECcCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhhccchhhhhhhcccccCccCHHHHHHHHHHcCCCEEEEeccC
Confidence            9999999999995489999999888899999999999997631000  00011233778889999999998689999999


Q ss_pred             CCCC-HHHHHHHHHHHHcCCCch
Q 036449          162 TQQN-VKAVFDAAIRVVLQPPKT  183 (197)
Q Consensus       162 ~~~~-i~~l~~~i~~~~~~~~~~  183 (197)
                      +|.| ++++|+++++.+......
T Consensus       185 ~g~g~v~~lf~~l~~~~~~~~~~  207 (214)
T 3q3j_B          185 TSEKSIHSIFRTASMLCLNKPSP  207 (214)
T ss_dssp             TCHHHHHHHHHHHHHHHHC----
T ss_pred             CCcccHHHHHHHHHHHHhccCcC
Confidence            9998 999999999998876544

>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...

Probab=100.00  E-value=7.5e-36  Score=208.19  Aligned_cols=180  Identities=63%  Similarity=1.061  Sum_probs=153.2

Q ss_pred             CceeEEEEEcCCCCCHHHHHHHHhhCCCCCCCCCceeeeeeEEEEECCeEEEEEEEeCCCccccccccccCcCCCcEEEE
Q 036449            4 SRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFIL   83 (197)
Q Consensus         4 ~~~~~i~v~G~~~~GKstli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~   83 (197)
                      .+.++|+++|.+|+|||||++++..+.+...+.++.+..+.....+++..+.+++||+||++.+...+..++..+|++++
T Consensus         3 ~~~~~i~~~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~   82 (186)
T 1mh1_A            3 PQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVSLI   82 (186)
T ss_dssp             CEEEEEEEECSTTSSHHHHHHHHHHSSCCSSCCCCSCCEEEEEEEETTEEEEEEEECCCCSGGGTTTGGGGCTTCSEEEE
T ss_pred             CcEEEEEEECCCCCCHHHHHHHHHcCCCCCCcCCcccceeEEEEEECCEEEEEEEEECCCCHhHHHHHHHhccCCcEEEE
Confidence            46799999999999999999999999998888888887777777888989999999999999999999999999999999


Q ss_pred             EEeCCCchhHHHHHHHHHHHHhhhCCCCCEEEEeeCCcccCCcccc--cCCCCCCcccHHHHHHHHHHhCCCceEEeccC
Q 036449           84 AFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLRDDKQFF--IDHPGAVPISTAQGEELRKLIGAPAYIECSSK  161 (197)
Q Consensus        84 v~d~~~~~s~~~~~~~~~~~i~~~~~~~~~ivv~nK~D~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~  161 (197)
                      |||++++.+++.+...|+..+....++.|+++|+||+|+.+.....  ......+.+..+++..+++..+..+++++||+
T Consensus        83 v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~  162 (186)
T 1mh1_A           83 CFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSAL  162 (186)
T ss_dssp             EEETTCHHHHHHHHHTHHHHHHHHSTTSCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEECCTT
T ss_pred             EEECCChhhHHHHHHHHHHHHHHhCCCCCEEEEeEcccccccchhhhhhcccccccCCHHHHHHHHHhcCCcEEEEecCC
Confidence            9999999999998558999998877889999999999997642100  00011233667788889998886689999999


Q ss_pred             CCCCHHHHHHHHHHHHcCCCch
Q 036449          162 TQQNVKAVFDAAIRVVLQPPKT  183 (197)
Q Consensus       162 ~~~~i~~l~~~i~~~~~~~~~~  183 (197)
                      +|.|++++|++|.+.+.+.+..
T Consensus       163 ~g~gi~~l~~~l~~~~~~~~~~  184 (186)
T 1mh1_A          163 TQRGLKTVFDEAIRAVLCPPPV  184 (186)
T ss_dssp             TCTTHHHHHHHHHHHHSCCCC-
T ss_pred             CccCHHHHHHHHHHHHhccccc
Confidence            9999999999999999876543

>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}

Probab=100.00  E-value=4.9e-36  Score=211.88  Aligned_cols=178  Identities=52%  Similarity=0.889  Sum_probs=143.5

Q ss_pred             CCceeEEEEEcCCCCCHHHHHHHHhhCCCCCCCCCceeeeeeEEEEECCeEEEEEEEeCCCccccccccccCcCCCcEEE
Q 036449            3 ASRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFI   82 (197)
Q Consensus         3 ~~~~~~i~v~G~~~~GKstli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i   82 (197)
                      ..+.++|+++|.+|||||||++++..+.+...+.+|.+..+...+.+++..+.+.+||+||++.+..++..++.++|++|
T Consensus        17 ~~~~~ki~~~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i   96 (201)
T 2q3h_A           17 EGRGVKCVLVGDGAVGKTSLVVSYTTNGYPTEYIPTAFDNFSAVVSVDGRPVRLQLCDTAGQDEFDKLRPLCYTNTDIFL   96 (201)
T ss_dssp             ---CEEEEEECSTTSSHHHHHHHHHC--------CCSSEEEEEEEEETTEEEEEEEEECCCSTTCSSSGGGGGTTCSEEE
T ss_pred             CCcceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCcccceeEEEEEECCEEEEEEEEECCCCHHHHHHhHhhcCCCcEEE
Confidence            45679999999999999999999999988888888888777777888888899999999999999999999999999999


Q ss_pred             EEEeCCCchhHHHHHHHHHHHHhhhCCCCCEEEEeeCCcccCCcccc--cCCCCCCcccHHHHHHHHHHhCCCceEEecc
Q 036449           83 LAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLRDDKQFF--IDHPGAVPISTAQGEELRKLIGAPAYIECSS  160 (197)
Q Consensus        83 ~v~d~~~~~s~~~~~~~~~~~i~~~~~~~~~ivv~nK~D~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa  160 (197)
                      +|||++++++++.+...|+..+....++.|+++|+||+|+.+.....  ........+..+++..++..++..+++++||
T Consensus        97 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa  176 (201)
T 2q3h_A           97 LCFSVVSPSSFQNVSEKWVPEIRCHCPKAPIILVGTQSDLREDVKVLIELDKCKEKPVPEEAAKLLAEEIKAASYIECSA  176 (201)
T ss_dssp             EEEETTCHHHHHHHHHTHHHHHHHHCSSSCEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHHHHHTCSEEEECCT
T ss_pred             EEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEECHhhhhchhhhhhhcccccccCCHHHHHHHHHhcCCcEEEEEec
Confidence            99999999999998558999998887899999999999997632100  0001123366788889999988768999999


Q ss_pred             CCCCCHHHHHHHHHHHHcCC
Q 036449          161 KTQQNVKAVFDAAIRVVLQP  180 (197)
Q Consensus       161 ~~~~~i~~l~~~i~~~~~~~  180 (197)
                      +++.|++++|++|.+.+.+.
T Consensus       177 ~~g~gi~~l~~~l~~~~~~~  196 (201)
T 2q3h_A          177 LTQKNLKEVFDAAIVAGIQY  196 (201)
T ss_dssp             TTCTTHHHHHHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHHhcc
Confidence            99999999999999988644

>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*

Probab=100.00  E-value=6.8e-36  Score=208.44  Aligned_cols=177  Identities=36%  Similarity=0.708  Sum_probs=149.6

Q ss_pred             CCceeEEEEEcCCCCCHHHHHHHHhhCCCCCCCCCceeeeeeEEEEECCeEEEEEEEeCCCccccccccccCcCCCcEEE
Q 036449            3 ASRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFI   82 (197)
Q Consensus         3 ~~~~~~i~v~G~~~~GKstli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i   82 (197)
                      +.+.++|+++|.+|||||||++++..+.+...+.++.+..+...+.+++..+.+.+||+||++.|...+..++.++|++|
T Consensus         4 ~~~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i   83 (184)
T 1m7b_A            4 QNVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYTASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDSDAVL   83 (184)
T ss_dssp             --CEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCSEEEEEEEEECSSCEEEEEEEEECCSGGGTTTGGGGCTTCSEEE
T ss_pred             CceEEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEECCEEEEEEEEECCCChhhhhhHHhhcCCCcEEE
Confidence            46789999999999999999999999999888888887777767777888899999999999999999999999999999


Q ss_pred             EEEeCCCchhHHHHHHHHHHHHhhhCCCCCEEEEeeCCcccCCcccc--cCCCCCCcccHHHHHHHHHHhCCCceEEecc
Q 036449           83 LAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLRDDKQFF--IDHPGAVPISTAQGEELRKLIGAPAYIECSS  160 (197)
Q Consensus        83 ~v~d~~~~~s~~~~~~~~~~~i~~~~~~~~~ivv~nK~D~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa  160 (197)
                      +|||++++++++.+...|+..+....++.|+++|+||+|+.+.....  ......+.++.+++..+++.++..+|+++||
T Consensus        84 ~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa  163 (184)
T 1m7b_A           84 ICFDISRPETLDSVLKKWKGEIQEFCPNTKMLLVGCKSDLRTDVSTLVELSNHRQTPVSYDQGANMAKQIGAATYIECSA  163 (184)
T ss_dssp             EEEETTCHHHHHHHHHTHHHHHHHHCTTCEEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHHHHHTCSEEEECBT
T ss_pred             EEEECCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEEcchhhcchhhHhhhhhcccCCCCHHHHHHHHHHcCCcEEEEeee
Confidence            99999999999988678988888877899999999999997531100  0011223467788999999988558999999


Q ss_pred             C-CCCCHHHHHHHHHHHHcC
Q 036449          161 K-TQQNVKAVFDAAIRVVLQ  179 (197)
Q Consensus       161 ~-~~~~i~~l~~~i~~~~~~  179 (197)
                      + ++.|++++|+.+.+.+..
T Consensus       164 ~~~~~gi~~l~~~i~~~~l~  183 (184)
T 1m7b_A          164 LQSENSVRDIFHVATLACVN  183 (184)
T ss_dssp             TTBHHHHHHHHHHHHHHHHT
T ss_pred             cCCCcCHHHHHHHHHHHHhc
Confidence            9 689999999999998764

>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=100.00  E-value=1.8e-36  Score=213.63  Aligned_cols=184  Identities=26%  Similarity=0.485  Sum_probs=143.6

Q ss_pred             CCC-CceeEEEEEcCCCCCHHHHHHHHhhCCCCCCCCCceeeeeeEEEEECCeEEEEEEEeCCCccccccccccCcCCCc
Q 036449            1 MSA-SRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGAD   79 (197)
Q Consensus         1 m~~-~~~~~i~v~G~~~~GKstli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~   79 (197)
                      |++ ++.++|+++|.+|||||||++++..+.+...+.++.+..+......++..+.+.+||+||++.+...+..++..+|
T Consensus         2 m~~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d   81 (199)
T 2gf0_A            2 MPEQSNDYRVVVFGAGGVGKSSLVLRFVKGTFRDTYIPTIEDTYRQVISCDKSVCTLQITDTTGSHQFPAMQRLSISKGH   81 (199)
T ss_dssp             ---CCCCEEEEEEECTTSSHHHHHHHHHHSCCCCTTSCCCCEEEEEEEEETTEEEEEEEEECCGGGSCHHHHHHHHHHCS
T ss_pred             CccCCCeeEEEEECCCCCcHHHHHHHHHcCCCCCcccCccccceeEEEEECCEEEEEEEEeCCChHHhHHHHHHhhccCC
Confidence            443 5679999999999999999999999988887888887777667777888889999999999999988888999999


Q ss_pred             EEEEEEeCCCchhHHHHHHHHHHHHhhhC---CCCCEEEEeeCCcccCCcccccCCCCCCcccHHHHHHHHHHhCCCceE
Q 036449           80 VFILAFSLISKASYENVSKKWIPELKHYA---PGVPIILVGTKLDLRDDKQFFIDHPGAVPISTAQGEELRKLIGAPAYI  156 (197)
Q Consensus        80 ~~i~v~d~~~~~s~~~~~~~~~~~i~~~~---~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  156 (197)
                      ++++|||++++.+++.+ ..|+..+....   ++.|+++|+||+|+.+..           +..+++..++..++. +++
T Consensus        82 ~~i~v~d~~~~~s~~~~-~~~~~~i~~~~~~~~~~piilv~nK~Dl~~~~-----------~~~~~~~~~~~~~~~-~~~  148 (199)
T 2gf0_A           82 AFILVFSVTSKQSLEEL-GPIYKLIVQIKGSVEDIPVMLVGNKCDETQRE-----------VDTREAQAVAQEWKC-AFM  148 (199)
T ss_dssp             EEEEEEETTCHHHHHTT-HHHHHHHHHHHSCGGGSCEEEEEECTTCSSCS-----------SCHHHHHHHHHHHTC-EEE
T ss_pred             EEEEEEECcCHHHHHHH-HHHHHHHHHHhcCCCCCCEEEEEECccCCccc-----------cCHHHHHHHHHHhCC-eEE
Confidence            99999999999999988 55666555432   478999999999996522           456778888888988 899


Q ss_pred             EeccCCCCCHHHHHHHHHHHHcCCCch----------hhhhhccccccccC
Q 036449          157 ECSSKTQQNVKAVFDAAIRVVLQPPKT----------KKKKNKAQKACSIL  197 (197)
Q Consensus       157 ~~sa~~~~~i~~l~~~i~~~~~~~~~~----------~~~~~~~~~~c~~~  197 (197)
                      ++||++|.|++++|++|.+.+..+...          +...++++++|++|
T Consensus       149 ~~Sa~~~~gi~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~C~~~  199 (199)
T 2gf0_A          149 ETSAKMNYNVKELFQELLTLETRRNMSLNIDGKRSGKQKRTDRVKGKCTLM  199 (199)
T ss_dssp             ECBTTTTBSHHHHHHHHHHHCSSSCEECC----------------------
T ss_pred             EEecCCCCCHHHHHHHHHHHHhhhhccccccccccccCccccCCCCceeeC
Confidence            999999999999999999988766331          11223456678876

>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}

Probab=100.00  E-value=7e-36  Score=208.96  Aligned_cols=165  Identities=24%  Similarity=0.423  Sum_probs=141.5

Q ss_pred             CCCceeEEEEEcCCCCCHHHHHHHHhhCCCCCCCCCceeeeeeEEEEECCeEEEEEEEeCCCccccccccccCcCCCcEE
Q 036449            2 SASRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVF   81 (197)
Q Consensus         2 ~~~~~~~i~v~G~~~~GKstli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~   81 (197)
                      .+.+.+||+++|.+|||||||++++..+.+...+.+|.+..+.....+++..+.+++||+||++.+..+ ..++.++|++
T Consensus        17 ~~~~~~ki~vvG~~~vGKTsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~-~~~~~~~~~~   95 (187)
T 3c5c_A           17 QGPLEVNLAILGRRGAGKSALTVKFLTKRFISEYDPNLEDTYSSEETVDHQPVHLRVMDTADLDTPRNC-ERYLNWAHAF   95 (187)
T ss_dssp             ---CEEEEEEECCTTSSHHHHHHHHHHSSCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCC---CCCT-HHHHTTCSEE
T ss_pred             CCCceEEEEEECCCCCcHHHHHHHHHhCCCCcccCCCccceeeEEEEECCEEEEEEEEECCCCCcchhH-HHHHhhCCEE
Confidence            345779999999999999999999999999888899998777777778888899999999999988775 5688999999


Q ss_pred             EEEEeCCCchhHHHHHHHHHHHHhhhC----CCCCEEEEeeCCcccCCcccccCCCCCCcccHHHHHHHHHHhCCCceEE
Q 036449           82 ILAFSLISKASYENVSKKWIPELKHYA----PGVPIILVGTKLDLRDDKQFFIDHPGAVPISTAQGEELRKLIGAPAYIE  157 (197)
Q Consensus        82 i~v~d~~~~~s~~~~~~~~~~~i~~~~----~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  157 (197)
                      ++|||++++++++.+ ..|+..+....    ++.|+++|+||+|+...+.          ++.+++.++++..+. ++++
T Consensus        96 ilv~d~~~~~s~~~~-~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~----------v~~~~~~~~~~~~~~-~~~e  163 (187)
T 3c5c_A           96 LVVYSVDSRQSFDSS-SSYLELLALHAKETQRSIPALLLGNKLDMAQYRQ----------VTKAEGVALAGRFGC-LFFE  163 (187)
T ss_dssp             EEEEETTCHHHHHHH-HHHHHHHHHHHHHHCCCCCEEEEEECGGGGGGCS----------SCHHHHHHHHHHHTC-EEEE
T ss_pred             EEEEECCCHHHHHHH-HHHHHHHHHHhhccCCCCCEEEEEECcchhhcCc----------cCHHHHHHHHHHcCC-cEEE
Confidence            999999999999998 68888877653    5899999999999976443          677888999999998 8999


Q ss_pred             ecc-CCCCCHHHHHHHHHHHHcC
Q 036449          158 CSS-KTQQNVKAVFDAAIRVVLQ  179 (197)
Q Consensus       158 ~sa-~~~~~i~~l~~~i~~~~~~  179 (197)
                      +|| +++.|++++|+.|++.+.+
T Consensus       164 ~Sa~~~g~gv~~lf~~l~~~i~~  186 (187)
T 3c5c_A          164 VSACLDFEHVQHVFHEAVREARR  186 (187)
T ss_dssp             CCSSSCSHHHHHHHHHHHHHHHC
T ss_pred             EeecCccccHHHHHHHHHHHHhh
Confidence            999 8999999999999988753

>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}

Probab=100.00  E-value=2.4e-35  Score=204.66  Aligned_cols=168  Identities=33%  Similarity=0.570  Sum_probs=146.0

Q ss_pred             CceeEEEEEcCCCCCHHHHHHHHhhCCCCCCCCCceeee-eeEEEEECCeEEEEEEEeCCCccccccccccCcCCCcEEE
Q 036449            4 SRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDN-FSANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFI   82 (197)
Q Consensus         4 ~~~~~i~v~G~~~~GKstli~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i   82 (197)
                      ++.++|+++|.+|+|||||++++.++.+...+.++.+.. ....+.+++..+.+.+||+||++.+...+..++..+|+++
T Consensus         7 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i   86 (181)
T 3tw8_B            7 DHLFKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGEKVKLQIWDTAGQERFRTITSTYYRGTHGVI   86 (181)
T ss_dssp             CEEEEEEEECCTTSCHHHHHHHHCSCC---CCTTTBSEEEEEEEEEETTEEEEEEEEEETTGGGCSSCCGGGGTTCSEEE
T ss_pred             CcceEEEEECCCCCCHHHHHHHHhcCCCCCccCCCceeEEEEEEEEECCEEEEEEEEcCCCchhhhhhHHHHhccCCEEE
Confidence            567999999999999999999999998877777777544 3456677888899999999999999999999999999999


Q ss_pred             EEEeCCCchhHHHHHHHHHHHHhhhCCCCCEEEEeeCCcccCCcccccCCCCCCcccHHHHHHHHHHhCCCceEEeccCC
Q 036449           83 LAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPISTAQGEELRKLIGAPAYIECSSKT  162 (197)
Q Consensus        83 ~v~d~~~~~s~~~~~~~~~~~i~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~  162 (197)
                      +|||++++.+++.+ ..|+..+....++.|+++|+||+|+.+.+.          +..+++..++...+. +++++||++
T Consensus        87 ~v~d~~~~~s~~~~-~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~----------~~~~~~~~~~~~~~~-~~~~~Sa~~  154 (181)
T 3tw8_B           87 VVYDVTSAESFVNV-KRWLHEINQNCDDVCRILVGNKNDDPERKV----------VETEDAYKFAGQMGI-QLFETSAKE  154 (181)
T ss_dssp             EEEETTCHHHHHHH-HHHHHHHHHHCTTSEEEEEEECTTCGGGCC----------SCHHHHHHHHHHHTC-CEEECBTTT
T ss_pred             EEEECCCHHHHHHH-HHHHHHHHHhCCCCCEEEEEECCCCchhcc----------cCHHHHHHHHHHcCC-eEEEEECCC
Confidence            99999999999998 789999988888999999999999976543          667888899999998 899999999


Q ss_pred             CCCHHHHHHHHHHHHcCCCch
Q 036449          163 QQNVKAVFDAAIRVVLQPPKT  183 (197)
Q Consensus       163 ~~~i~~l~~~i~~~~~~~~~~  183 (197)
                      |.|++++|++|.+.+...+..
T Consensus       155 ~~gi~~l~~~l~~~~~~~~~~  175 (181)
T 3tw8_B          155 NVNVEEMFNCITELVLRAKKD  175 (181)
T ss_dssp             TBSHHHHHHHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHHHhhh
Confidence            999999999999988765443

>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*

Probab=100.00  E-value=1.9e-35  Score=205.87  Aligned_cols=164  Identities=34%  Similarity=0.543  Sum_probs=146.9

Q ss_pred             CceeEEEEEcCCCCCHHHHHHHHhhCCCCCCCCCceeeeeeEEEEECCeEEEEEEEeCCCccccccccccCcCCCcEEEE
Q 036449            4 SRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFIL   83 (197)
Q Consensus         4 ~~~~~i~v~G~~~~GKstli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~   83 (197)
                      .+.+||+++|.+|+|||||++++..+.+...+.++.+..+.....+++..+.+.+||+||++.+...+..++.++|++++
T Consensus        16 ~~~~ki~v~G~~~~GKSsl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~   95 (183)
T 3kkq_A           16 LPTYKLVVVGDGGVGKSALTIQFFQKIFVDDYDPTIEDSYLKHTEIDNQWAILDVLDTAGQEEFSAMREQYMRTGDGFLI   95 (183)
T ss_dssp             CCEEEEEEECSTTSSHHHHHHHHHHSCCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCSCGGGCSSHHHHHHHCSEEEE
T ss_pred             CCceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCCccceeEEEEEeCCcEEEEEEEECCCchhhHHHHHHHHhcCCEEEE
Confidence            46799999999999999999999999998888898887777788889989999999999999999999999999999999


Q ss_pred             EEeCCCchhHHHHHHHHHHHHhhh--CCCCCEEEEeeCCcccCCcccccCCCCCCcccHHHHHHHHHHhCCCceEEeccC
Q 036449           84 AFSLISKASYENVSKKWIPELKHY--APGVPIILVGTKLDLRDDKQFFIDHPGAVPISTAQGEELRKLIGAPAYIECSSK  161 (197)
Q Consensus        84 v~d~~~~~s~~~~~~~~~~~i~~~--~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~  161 (197)
                      |||++++++++.+ ..|+..+...  .++.|+++|+||+|+.+.+.          +..++++.+++.++. +++++||+
T Consensus        96 v~d~~~~~s~~~~-~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~----------v~~~~~~~~~~~~~~-~~~~~Sa~  163 (183)
T 3kkq_A           96 VYSVTDKASFEHV-DRFHQLILRVKDRESFPMILVANKVDLMHLRK----------VTRDQGKEMATKYNI-PYIETSAK  163 (183)
T ss_dssp             EEETTCHHHHHTH-HHHHHHHHHHHTSSCCCEEEEEECTTCSTTCC----------SCHHHHHHHHHHHTC-CEEEEBCS
T ss_pred             EEECCCHHHHHHH-HHHHHHHHHhcCCCCCcEEEEEECCCchhccC----------cCHHHHHHHHHHhCC-eEEEeccC
Confidence            9999999999998 6777777553  26899999999999976544          778889999999997 89999999


Q ss_pred             -CCCCHHHHHHHHHHHHcC
Q 036449          162 -TQQNVKAVFDAAIRVVLQ  179 (197)
Q Consensus       162 -~~~~i~~l~~~i~~~~~~  179 (197)
                       ++.|++++|++|.+.+.+
T Consensus       164 ~~~~~v~~l~~~l~~~i~~  182 (183)
T 3kkq_A          164 DPPLNVDKTFHDLVRVIRQ  182 (183)
T ss_dssp             SSCBSHHHHHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHHhh
Confidence             999999999999988753

>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}

Probab=100.00  E-value=1.9e-35  Score=210.98  Aligned_cols=178  Identities=45%  Similarity=0.859  Sum_probs=131.5

Q ss_pred             CceeEEEEEcCCCCCHHHHHHHHhhCCCCCCCCCceeeeeeEEEEECCeEEEEEEEeCCCccccccccccCcCCCcEEEE
Q 036449            4 SRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFIL   83 (197)
Q Consensus         4 ~~~~~i~v~G~~~~GKstli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~   83 (197)
                      .+.++|+++|.+|||||||++++..+.+...+.++....+.....+++..+.+.+||+||++.+...+..++.++|++|+
T Consensus        32 ~~~~ki~vvG~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i~  111 (214)
T 2j1l_A           32 VRSVKVVLVGDGGCGKTSLLMVFADGAFPESYTPTVFERYMVNLQVKGKPVHLHIWDTAGQDDYDRLRPLFYPDASVLLL  111 (214)
T ss_dssp             CCEEEEEEEECTTSSHHHHHHHHHC-------CCCCCEEEEEEEEETTEEEEEEEEEC---------------CEEEEEE
T ss_pred             cceEEEEEECcCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEECCEEEEEEEEECCCchhhhHHHHHHhccCCEEEE
Confidence            45699999999999999999999999888888888877777777888888999999999999999999999999999999


Q ss_pred             EEeCCCchhHHHHHHHHHHHHhhhCCCCCEEEEeeCCcccCCcccc--cCCCCCCcccHHHHHHHHHHhCCCceEEeccC
Q 036449           84 AFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLRDDKQFF--IDHPGAVPISTAQGEELRKLIGAPAYIECSSK  161 (197)
Q Consensus        84 v~d~~~~~s~~~~~~~~~~~i~~~~~~~~~ivv~nK~D~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~  161 (197)
                      |||++++.+++.+...|+..+....++.|+++|+||+|+.......  ......+.++.+++..+++..+..+++++||+
T Consensus       112 v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~SA~  191 (214)
T 2j1l_A          112 CFDVTSPNSFDNIFNRWYPEVNHFCKKVPIIVVGCKTDLRKDKSLVNKLRRNGLEPVTYHRGQEMARSVGAVAYLECSAR  191 (214)
T ss_dssp             EEETTCHHHHHHHHHTHHHHHHHHCSSCCEEEEEECGGGGSCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEECBTT
T ss_pred             EEECcCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhhhccchhhhhhcccccCcccHHHHHHHHHhcCCCEEEEecCC
Confidence            9999999999998558999998887889999999999997653210  00011223677888899999987689999999


Q ss_pred             CCCCHHHHHHHHHHHHcCCC
Q 036449          162 TQQNVKAVFDAAIRVVLQPP  181 (197)
Q Consensus       162 ~~~~i~~l~~~i~~~~~~~~  181 (197)
                      +|.|++++|++|.+.+.+.+
T Consensus       192 ~g~gi~el~~~l~~~~~~~~  211 (214)
T 2j1l_A          192 LHDNVHAVFQEAAEVALSSR  211 (214)
T ss_dssp             TTBSHHHHHHHHHHHHHHC-
T ss_pred             CCCCHHHHHHHHHHHHHHhh
Confidence            99999999999999887553

>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0

Probab=100.00  E-value=2.6e-35  Score=205.60  Aligned_cols=165  Identities=23%  Similarity=0.342  Sum_probs=141.2

Q ss_pred             CCCceeEEEEEcCCCCCHHHHHHHHhhCCCCCCCCCceeeeeeEEEEECCeEEEEEEEeCCCccccccccccCcCCCcEE
Q 036449            2 SASRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVF   81 (197)
Q Consensus         2 ~~~~~~~i~v~G~~~~GKstli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~   81 (197)
                      .+.+.+||+++|.+|||||||++++..+.+...+.++ ...+...+.+++..+.+++||++|++.+.     ++.++|++
T Consensus        16 ~~~~~~ki~ivG~~~vGKSsL~~~~~~~~~~~~~~~t-~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~-----~~~~~~~~   89 (184)
T 3ihw_A           16 FQGPELKVGIVGNLSSGKSALVHRYLTGTYVQEESPE-GGRFKKEIVVDGQSYLLLIRDEGGPPELQ-----FAAWVDAV   89 (184)
T ss_dssp             CCCCEEEEEEECCTTSCHHHHHHHHHHSSCCCCCCTT-CEEEEEEEEETTEEEEEEEEECSSSCCHH-----HHHHCSEE
T ss_pred             CCCCeeEEEEECCCCCCHHHHHHHHhcCCCCCCcCCC-cceEEEEEEECCEEEEEEEEECCCChhhh-----eecCCCEE
Confidence            4567899999999999999999999999998877777 44556778889999999999999998876     67789999


Q ss_pred             EEEEeCCCchhHHHHHHHHHHHHhhhC--CCCCEEEEeeCCcccCCcccccCCCCCCcccHHHHHHHHHHhCCCceEEec
Q 036449           82 ILAFSLISKASYENVSKKWIPELKHYA--PGVPIILVGTKLDLRDDKQFFIDHPGAVPISTAQGEELRKLIGAPAYIECS  159 (197)
Q Consensus        82 i~v~d~~~~~s~~~~~~~~~~~i~~~~--~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s  159 (197)
                      ++|||++++.+++.+ ..|+..+....  ++.|+++|+||+|+....        ...+..+++..++..++..+|+++|
T Consensus        90 i~v~d~~~~~s~~~~-~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~--------~~~v~~~~~~~~~~~~~~~~~~e~S  160 (184)
T 3ihw_A           90 VFVFSLEDEISFQTV-YNYFLRLCSFRNASEVPMVLVGTQDAISAAN--------PRVIDDSRARKLSTDLKRCTYYETC  160 (184)
T ss_dssp             EEEEETTCHHHHHHH-HHHHHHHHTTSCGGGSCEEEEEECTTCBTTB--------CCCSCHHHHHHHHHHTTTCEEEEEB
T ss_pred             EEEEECcCHHHHHHH-HHHHHHHHHhcCCCCCCEEEEEECccccccc--------ccccCHHHHHHHHHHcCCCeEEEec
Confidence            999999999999998 67888887764  589999999999995321        1236788899999999844999999


Q ss_pred             cCCCCCHHHHHHHHHHHHcCCC
Q 036449          160 SKTQQNVKAVFDAAIRVVLQPP  181 (197)
Q Consensus       160 a~~~~~i~~l~~~i~~~~~~~~  181 (197)
                      |++|.|++++|+++++.+.+.+
T Consensus       161 a~~~~gv~~lf~~l~~~i~~~~  182 (184)
T 3ihw_A          161 ATYGLNVERVFQDVAQKVVALR  182 (184)
T ss_dssp             TTTTBTHHHHHHHHHHHHHHHC
T ss_pred             CCCCCCHHHHHHHHHHHHHHHh
Confidence            9999999999999999876543

>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*

Probab=100.00  E-value=5.7e-35  Score=200.94  Aligned_cols=165  Identities=30%  Similarity=0.599  Sum_probs=137.0

Q ss_pred             CCceeEEEEEcCCCCCHHHHHHHHhhCCCCCCCCCceeeee-eEEEEECCeEEEEEEEeCCCccccccccccCcCCCcEE
Q 036449            3 ASRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNF-SANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVF   81 (197)
Q Consensus         3 ~~~~~~i~v~G~~~~GKstli~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~   81 (197)
                      .++.++|+++|.+|+|||||++++..+.+...+.++.+..+ .....+++..+.+.+||+||++.+...+..++.++|++
T Consensus         3 ~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~   82 (170)
T 1z08_A            3 RAYSFKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLGASFLTKKLNIGGKRVNLAIWDTAGQERFHALGPIYYRDSNGA   82 (170)
T ss_dssp             -CEEEEEEEECCTTSCHHHHHHHHHHCCCCSSCCCCCSCEEEEEEEESSSCEEEEEEEECCCC-------CCSSTTCSEE
T ss_pred             CCcceEEEEECcCCCCHHHHHHHHHcCCCCcCCCCccceEEEEEEEEECCEEEEEEEEECCCcHhhhhhHHHHhccCCEE
Confidence            46789999999999999999999999988877777775444 35566778889999999999999999999999999999


Q ss_pred             EEEEeCCCchhHHHHHHHHHHHHhhhC-CCCCEEEEeeCCcccCCcccccCCCCCCcccHHHHHHHHHHhCCCceEEecc
Q 036449           82 ILAFSLISKASYENVSKKWIPELKHYA-PGVPIILVGTKLDLRDDKQFFIDHPGAVPISTAQGEELRKLIGAPAYIECSS  160 (197)
Q Consensus        82 i~v~d~~~~~s~~~~~~~~~~~i~~~~-~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa  160 (197)
                      ++|||++++.+++.+ ..|+..+.... ++.|+++|+||+|+.+.+.          +..+++..+++..+. +++++||
T Consensus        83 i~v~d~~~~~s~~~~-~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~----------~~~~~~~~~~~~~~~-~~~~~Sa  150 (170)
T 1z08_A           83 ILVYDITDEDSFQKV-KNWVKELRKMLGNEICLCIVGNKIDLEKERH----------VSIQEAESYAESVGA-KHYHTSA  150 (170)
T ss_dssp             EEEEETTCHHHHHHH-HHHHHHHHHHHGGGSEEEEEEECGGGGGGCC----------SCHHHHHHHHHHTTC-EEEEEBT
T ss_pred             EEEEECcCHHHHHHH-HHHHHHHHHhcCCCCeEEEEEECcccccccc----------cCHHHHHHHHHHcCC-eEEEecC
Confidence            999999999999998 68888777654 5799999999999976543          567788899999987 8999999


Q ss_pred             CCCCCHHHHHHHHHHHHcC
Q 036449          161 KTQQNVKAVFDAAIRVVLQ  179 (197)
Q Consensus       161 ~~~~~i~~l~~~i~~~~~~  179 (197)
                      +++.|++++|++|.+.+.+
T Consensus       151 ~~~~gi~~l~~~l~~~~~~  169 (170)
T 1z08_A          151 KQNKGIEELFLDLCKRMIE  169 (170)
T ss_dssp             TTTBSHHHHHHHHHHHHHC
T ss_pred             CCCCCHHHHHHHHHHHHhh
Confidence            9999999999999998754

>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...

Probab=100.00  E-value=1.2e-34  Score=204.92  Aligned_cols=176  Identities=51%  Similarity=0.889  Sum_probs=150.2

Q ss_pred             CceeEEEEEcCCCCCHHHHHHHHhhCCCCCCCCCceeeeeeEEEEECCeEEEEEEEeCCCccccccccccCcCCCcEEEE
Q 036449            4 SRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFIL   83 (197)
Q Consensus         4 ~~~~~i~v~G~~~~GKstli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~   83 (197)
                      ...+||+++|.+|+|||||++++..+.+...+.++.+..+...+.+++..+.+.+||+||++.+...+..++.++|++|+
T Consensus        23 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~  102 (201)
T 2gco_A           23 AIRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYIADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILM  102 (201)
T ss_dssp             CEEEEEEEEESTTSSHHHHHHHHHHSSCCSSCCCSSCCCCEEEEEETTEEEEEEEECCCCSGGGTTTGGGGCTTCSEEEE
T ss_pred             ccceEEEEECCCCCCHHHHHHHHHhCcCCcccCCcccceEEEEEEECCEEEEEEEEECCCchhHHHHHHHhcCCCCEEEE
Confidence            35689999999999999999999999988888888877776667788888999999999999999999999999999999


Q ss_pred             EEeCCCchhHHHHHHHHHHHHhhhCCCCCEEEEeeCCcccCCcccc--cCCCCCCcccHHHHHHHHHHhCCCceEEeccC
Q 036449           84 AFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLRDDKQFF--IDHPGAVPISTAQGEELRKLIGAPAYIECSSK  161 (197)
Q Consensus        84 v~d~~~~~s~~~~~~~~~~~i~~~~~~~~~ivv~nK~D~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~  161 (197)
                      |||++++++++.+...|...+....++.|+++|+||+|+.+.....  ......+.+..+++..+++..+..+++++||+
T Consensus       103 v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~SA~  182 (201)
T 2gco_A          103 CFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRQDEHTRRELAKMKQEPVRSEEGRDMANRISAFGYLECSAK  182 (201)
T ss_dssp             EEETTCHHHHHHHHHTHHHHHHHHSTTCCEEEEEECGGGTTCHHHHHHHHTTTCCCCCHHHHHHHHHHTTCSEEEECCTT
T ss_pred             EEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEecHHhhcCccchhhhcccccCcCCHHHHHHHHHhCCCcEEEEeeCC
Confidence            9999999999998678999888877899999999999997642110  00111233667888899999887689999999


Q ss_pred             CCCCHHHHHHHHHHHHcC
Q 036449          162 TQQNVKAVFDAAIRVVLQ  179 (197)
Q Consensus       162 ~~~~i~~l~~~i~~~~~~  179 (197)
                      +|.|++++|++|.+.+.+
T Consensus       183 ~g~gi~~l~~~i~~~~l~  200 (201)
T 2gco_A          183 TKEGVREVFEMATRAGLQ  200 (201)
T ss_dssp             TCTTHHHHHHHHHHHHHC
T ss_pred             CCCCHHHHHHHHHHHHhc
Confidence            999999999999998754

>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*

Probab=100.00  E-value=8.2e-36  Score=207.70  Aligned_cols=167  Identities=29%  Similarity=0.602  Sum_probs=116.9

Q ss_pred             CceeEEEEEcCCCCCHHHHHHHHhhCCCCCCCCCceeeee-eEEEEECCeEEEEEEEeCCCccccccccccCcCCCcEEE
Q 036449            4 SRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNF-SANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFI   82 (197)
Q Consensus         4 ~~~~~i~v~G~~~~GKstli~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i   82 (197)
                      +..++|+++|.+|+|||||++++..+.+...+.++.+..+ ...+.+++..+.+.+||+||++.+...+..++.++|++|
T Consensus         6 ~~~~ki~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i   85 (183)
T 2fu5_C            6 DYLFKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGIM   85 (183)
T ss_dssp             SEEEEEEEECCCCC----------------CHHHHHCEEEEEEEEEETTEEEEEEEEEC---------CCTTTTTCSEEE
T ss_pred             CCceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCcccceeEEEEEEECCEEEEEEEEcCCCChhhhhhHHHHHhcCCEEE
Confidence            4679999999999999999999998888776667765444 456667888899999999999999999999999999999


Q ss_pred             EEEeCCCchhHHHHHHHHHHHHhhhC-CCCCEEEEeeCCcccCCcccccCCCCCCcccHHHHHHHHHHhCCCceEEeccC
Q 036449           83 LAFSLISKASYENVSKKWIPELKHYA-PGVPIILVGTKLDLRDDKQFFIDHPGAVPISTAQGEELRKLIGAPAYIECSSK  161 (197)
Q Consensus        83 ~v~d~~~~~s~~~~~~~~~~~i~~~~-~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~  161 (197)
                      +|||++++.+++.+ ..|+..+.... ++.|+++|+||+|+.+.+.          +..+++..+++.++. +++++||+
T Consensus        86 ~v~d~~~~~s~~~~-~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~----------v~~~~~~~~~~~~~~-~~~~~Sa~  153 (183)
T 2fu5_C           86 LVYDITNEKSFDNI-RNWIRNIEEHASADVEKMILGNKCDVNDKRQ----------VSKERGEKLALDYGI-KFMETSAK  153 (183)
T ss_dssp             EEEETTCHHHHHHH-HHHHHHHHHHSCTTCEEEEEEEC--CCSCCC----------SCHHHHHHHHHHHTC-EEEECCC-
T ss_pred             EEEECcCHHHHHHH-HHHHHHHHHhcCCCCCEEEEEECccCCccCc----------CCHHHHHHHHHHcCC-eEEEEeCC
Confidence            99999999999998 67888887765 6899999999999976443          667888899999998 89999999


Q ss_pred             CCCCHHHHHHHHHHHHcCCCc
Q 036449          162 TQQNVKAVFDAAIRVVLQPPK  182 (197)
Q Consensus       162 ~~~~i~~l~~~i~~~~~~~~~  182 (197)
                      ++.|++++|++|.+.+.....
T Consensus       154 ~~~~i~~l~~~l~~~i~~~~~  174 (183)
T 2fu5_C          154 ANINVENAFFTLARDIKAKMD  174 (183)
T ss_dssp             --CCHHHHHHHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHHHhh
Confidence            999999999999998876433

>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=100.00  E-value=9.9e-35  Score=206.18  Aligned_cols=178  Identities=50%  Similarity=0.867  Sum_probs=145.3

Q ss_pred             CceeEEEEEcCCCCCHHHHHHHHhhCCCCCCCCCceeeeeeEEEEECCeEEEEEEEeCCCccccccccccCcCCCcEEEE
Q 036449            4 SRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFIL   83 (197)
Q Consensus         4 ~~~~~i~v~G~~~~GKstli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~   83 (197)
                      ...+||+++|.+|||||||++++..+.+...+.++.+..+.....+++..+.+.+||+||++.+...+..++.++|++|+
T Consensus        23 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~  102 (207)
T 2fv8_A           23 MIRKKLVVVGDGACGKTCLLIVFSKDEFPEVYVPTVFENYVADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILM  102 (207)
T ss_dssp             SEEEEEEEEECTTSSHHHHHHHHHHSSCC-------CCEEEEEEEETTEEEEEEEEECTTCTTCTTTGGGGCTTCCEEEE
T ss_pred             ccCcEEEEECcCCCCHHHHHHHHhcCCCCCcCCCcccceEEEEEEECCEEEEEEEEECCCcHHHHHHHHhhcCCCCEEEE
Confidence            45689999999999999999999999988888888877776667788888999999999999999999999999999999


Q ss_pred             EEeCCCchhHHHHHHHHHHHHhhhCCCCCEEEEeeCCcccCCcccc--cCCCCCCcccHHHHHHHHHHhCCCceEEeccC
Q 036449           84 AFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLRDDKQFF--IDHPGAVPISTAQGEELRKLIGAPAYIECSSK  161 (197)
Q Consensus        84 v~d~~~~~s~~~~~~~~~~~i~~~~~~~~~ivv~nK~D~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~  161 (197)
                      |||++++.+++.+...|+..+....++.|+++|+||+|+.+.....  ........+..+++..++...+..+++++||+
T Consensus       103 v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~SA~  182 (207)
T 2fv8_A          103 CFSVDSPDSLENIPEKWVPEVKHFCPNVPIILVANKKDLRSDEHVRTELARMKQEPVRTDDGRAMAVRIQAYDYLECSAK  182 (207)
T ss_dssp             EEETTCHHHHHHHHHTHHHHHHHHSTTCCEEEEEECGGGGGCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEECCTT
T ss_pred             EEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEchhhhccccchhhhhhcccCCCCHHHHHHHHHhcCCCEEEEeeCC
Confidence            9999999999988678999888877899999999999997642110  00011123567788889998887689999999


Q ss_pred             CCCCHHHHHHHHHHHHcCCC
Q 036449          162 TQQNVKAVFDAAIRVVLQPP  181 (197)
Q Consensus       162 ~~~~i~~l~~~i~~~~~~~~  181 (197)
                      +|.|++++|++|.+.+....
T Consensus       183 ~g~gi~el~~~l~~~i~~~~  202 (207)
T 2fv8_A          183 TKEGVREVFETATRAALQKR  202 (207)
T ss_dssp             TCTTHHHHHHHHHHHHHSCC
T ss_pred             CCCCHHHHHHHHHHHHHHHh
Confidence            99999999999999987653

>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8

Probab=100.00  E-value=3.4e-35  Score=208.25  Aligned_cols=176  Identities=36%  Similarity=0.713  Sum_probs=148.5

Q ss_pred             CceeEEEEEcCCCCCHHHHHHHHhhCCCCCCCCCceeeeeeEEEEECCeEEEEEEEeCCCccccccccccCcCCCcEEEE
Q 036449            4 SRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFIL   83 (197)
Q Consensus         4 ~~~~~i~v~G~~~~GKstli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~   83 (197)
                      .+.+||+++|.+|||||||++++..+.+...+.+|.+..+...+.+++..+.+.+||+||++.|..++..++.++|++|+
T Consensus        26 ~~~~ki~vvG~~~vGKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~il  105 (205)
T 1gwn_A           26 NVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYTASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDSDAVLI  105 (205)
T ss_dssp             -CEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCSEEEEEEEEESSSSEEEEEEEEECCSGGGTTTGGGGCTTCSEEEE
T ss_pred             ceeeEEEEECCCCCCHHHHHHHHhcCCCCCCcCCccceeEEEEEEECCEEEEEEEEeCCCcHhhhHHHHhhccCCCEEEE
Confidence            46799999999999999999999999998888888877776667778888999999999999999999999999999999


Q ss_pred             EEeCCCchhHHHHHHHHHHHHhhhCCCCCEEEEeeCCcccCCcccc--cCCCCCCcccHHHHHHHHHHhCCCceEEeccC
Q 036449           84 AFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLRDDKQFF--IDHPGAVPISTAQGEELRKLIGAPAYIECSSK  161 (197)
Q Consensus        84 v~d~~~~~s~~~~~~~~~~~i~~~~~~~~~ivv~nK~D~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~  161 (197)
                      |||++++++++.+...|+..+....++.|+++|+||+|+.+.....  ......+.+..+++..+++.++..+|+++||+
T Consensus       106 v~D~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~SAk  185 (205)
T 1gwn_A          106 CFDISRPETLDSVLKKWKGEIQEFCPNTKMLLVGCKSDLRTDVSTLVELSNHRQTPVSYDQGANMAKQIGAATYIECSAL  185 (205)
T ss_dssp             EEETTCHHHHHHHHHTHHHHHHHHCTTCEEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHHHHHTCSEEEECCTT
T ss_pred             EEECCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEechhhccchhhhhhhcccccCCCCHHHHHHHHHHcCCCEEEEeeec
Confidence            9999999999988668989888877899999999999997531100  00111234677888999999885589999999


Q ss_pred             -CCCCHHHHHHHHHHHHcC
Q 036449          162 -TQQNVKAVFDAAIRVVLQ  179 (197)
Q Consensus       162 -~~~~i~~l~~~i~~~~~~  179 (197)
                       ++.|++++|+.+.+.+..
T Consensus       186 ~~~~gv~~lf~~l~~~~l~  204 (205)
T 1gwn_A          186 QSENSVRDIFHVATLACVN  204 (205)
T ss_dssp             TCHHHHHHHHHHHHHHHHH
T ss_pred             cCCcCHHHHHHHHHHHHhh
Confidence             689999999999988753

>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A

Probab=100.00  E-value=1.9e-35  Score=204.95  Aligned_cols=165  Identities=22%  Similarity=0.320  Sum_probs=138.2

Q ss_pred             CCCCceeEEEEEcCCCCCHHHHHHHHhhCCCCCCCCCceeeeeeEEEEECCeEEEEEEEeCCCccccccccccCcCCCcE
Q 036449            1 MSASRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGADV   80 (197)
Q Consensus         1 m~~~~~~~i~v~G~~~~GKstli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~   80 (197)
                      |++.+.+||+++|.+|||||||++++..+.+.. +.+|.+..+...+.+++..+.+++||+||+++     ..+++++|+
T Consensus         2 m~~~~~~ki~~vG~~~vGKTsli~~l~~~~~~~-~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~-----~~~~~~~d~   75 (178)
T 2iwr_A            2 MRSIPELRLGVLGDARSGKSSLIHRFLTGSYQV-LEKTESEQYKKEMLVDGQTHLVLIREEAGAPD-----AKFSGWADA   75 (178)
T ss_dssp             CCCCCEEEEEEECCGGGCHHHHHHHHHHSCCCC-CSSCSSSEEEEEEEETTEEEEEEEEECSSSCC-----HHHHHHCSE
T ss_pred             CCCCCceEEEEECCCCCCHHHHHHHHHhCCCCC-cCCCcceeEEEEEEECCEEEEEEEEECCCCch-----hHHHHhCCE
Confidence            778889999999999999999999999998876 67888777777788888889999999999976     346778999


Q ss_pred             EEEEEeCCCchhHHHHHHHHHHHHhhh---C-CCCCEEEEeeCCcccCCcccccCCCCCCcccHHHHHHHHHHhCCCceE
Q 036449           81 FILAFSLISKASYENVSKKWIPELKHY---A-PGVPIILVGTKLDLRDDKQFFIDHPGAVPISTAQGEELRKLIGAPAYI  156 (197)
Q Consensus        81 ~i~v~d~~~~~s~~~~~~~~~~~i~~~---~-~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  156 (197)
                      +|+|||++++++++.+ ..|+..+...   . ++.|+++|+||+|+....        .+.+..+++..++...+..+++
T Consensus        76 ~ilv~D~~~~~s~~~~-~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~--------~~~v~~~~~~~~~~~~~~~~~~  146 (178)
T 2iwr_A           76 VIFVFSLEDENSFQAV-SRLHGQLSSLRGEGRGGLALALVGTQDRISASS--------PRVVGDARARALXADMKRCSYY  146 (178)
T ss_dssp             EEEEEETTCHHHHHHH-HHHHHHHHHHHCSSSCCCEEEEEEECTTCBTTB--------CCCSCHHHHHHHHHHHSSEEEE
T ss_pred             EEEEEECcCHHHHHHH-HHHHHHHHHHHhcCCCCCCEEEEEECccccccc--------cCcCCHHHHHHHHHhhcCCeEE
Confidence            9999999999999998 6765555433   2 589999999999995321        1236778888888887434899


Q ss_pred             EeccCCCCCHHHHHHHHHHHHcCC
Q 036449          157 ECSSKTQQNVKAVFDAAIRVVLQP  180 (197)
Q Consensus       157 ~~sa~~~~~i~~l~~~i~~~~~~~  180 (197)
                      ++||++|.|++++|++|++.+...
T Consensus       147 ~~Sa~~~~~i~~lf~~l~~~~~~~  170 (178)
T 2iwr_A          147 ETXATYGLNVDRVFQEVAQKVVTL  170 (178)
T ss_dssp             EEBTTTTBTHHHHHHHHHHHHHHH
T ss_pred             EEeccccCCHHHHHHHHHHHHHHH
Confidence            999999999999999999988654

>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*

Probab=100.00  E-value=4.2e-35  Score=203.49  Aligned_cols=167  Identities=31%  Similarity=0.535  Sum_probs=146.4

Q ss_pred             CCceeEEEEEcCCCCCHHHHHHHHhhCCCCCCCCCceeeeeeEEEEECCeEEEEEEEeCCCccccccccccCcCCCcEEE
Q 036449            3 ASRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFI   82 (197)
Q Consensus         3 ~~~~~~i~v~G~~~~GKstli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i   82 (197)
                      +.+.++|+++|.+|+|||||++++.++.+...+.++.+..+.....+++..+.+.+||+||++.+...+..++..+|+++
T Consensus         6 ~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~~i   85 (181)
T 2fn4_A            6 PSETHKLVVVGGGGVGKSALTIQFIQSYFVSDYDPTIEDSYTKICSVDGIPARLDILDTAGQEEFGAMREQYMRAGHGFL   85 (181)
T ss_dssp             SSCEEEEEEEECTTSSHHHHHHHHHHSSCCSSCCTTCCEEEEEEEEETTEEEEEEEEECCCTTTTSCCHHHHHHHCSEEE
T ss_pred             CCCceEEEEECCCCCCHHHHHHHHHhCcCccccCCCcCceEEEEEEECCEEEEEEEEECCCchhhHHHHHHHHhhCCEEE
Confidence            35679999999999999999999999999888889888777777888888899999999999999999999999999999


Q ss_pred             EEEeCCCchhHHHHHHHHHHHH-hhhC-CCCCEEEEeeCCcccCCcccccCCCCCCcccHHHHHHHHHHhCCCceEEecc
Q 036449           83 LAFSLISKASYENVSKKWIPEL-KHYA-PGVPIILVGTKLDLRDDKQFFIDHPGAVPISTAQGEELRKLIGAPAYIECSS  160 (197)
Q Consensus        83 ~v~d~~~~~s~~~~~~~~~~~i-~~~~-~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa  160 (197)
                      +|||++++.++..+ ..|+..+ .... ++.|+++|+||+|+.+.+.          +..+++..++...+. +++++||
T Consensus        86 ~v~d~~~~~s~~~~-~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~----------v~~~~~~~~~~~~~~-~~~~~Sa  153 (181)
T 2fn4_A           86 LVFAINDRQSFNEV-GKLFTQILRVKDRDDFPVVLVGNKADLESQRQ----------VPRSEASAFGASHHV-AYFEASA  153 (181)
T ss_dssp             EEEETTCHHHHHHH-HHHHHHHHHHHTSSCCCEEEEEECGGGGGGCC----------SCHHHHHHHHHHTTC-EEEECBT
T ss_pred             EEEeCCCHHHHHHH-HHHHHHHHHhcCCCCCCEEEEEECcccccccc----------cCHHHHHHHHHHcCC-eEEEecC
Confidence            99999999999998 5776666 4333 5899999999999976543          667788889888887 8999999


Q ss_pred             CCCCCHHHHHHHHHHHHcCCC
Q 036449          161 KTQQNVKAVFDAAIRVVLQPP  181 (197)
Q Consensus       161 ~~~~~i~~l~~~i~~~~~~~~  181 (197)
                      ++|.|++++|++|.+.+.+..
T Consensus       154 ~~~~gv~~l~~~l~~~~~~~~  174 (181)
T 2fn4_A          154 KLRLNVDEAFEQLVRAVRKYQ  174 (181)
T ss_dssp             TTTBSHHHHHHHHHHHHHHHT
T ss_pred             CCCCCHHHHHHHHHHHHHHhh
Confidence            999999999999999886543

>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*

Probab=100.00  E-value=1.5e-34  Score=205.03  Aligned_cols=168  Identities=31%  Similarity=0.612  Sum_probs=145.4

Q ss_pred             CC--CCceeEEEEEcCCCCCHHHHHHHHhhCCCCCCCCCceeeee-eEEEEECCeEEEEEEEeCCCccccccccccCcCC
Q 036449            1 MS--ASRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNF-SANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRG   77 (197)
Q Consensus         1 m~--~~~~~~i~v~G~~~~GKstli~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~   77 (197)
                      |+  .++.++|+++|.+|+|||||++++.++.+...+.++.+..+ ...+.+++..+.+.+||+||++.+...+..++..
T Consensus         1 M~~~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~   80 (206)
T 2bcg_Y            1 MNSEYDYLFKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWDTAGQERFRTITSSYYRG   80 (206)
T ss_dssp             --CCCSEEEEEEEEESTTSSHHHHHHHHHHCCCCTTCCCSSCCCEEEEEEEETTEEEEEEEECCTTTTTTTCCCGGGGTT
T ss_pred             CCcccCcceEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEEECCEEEEEEEEeCCChHHHHHHHHHhccC
Confidence            65  35679999999999999999999999998887777775444 4566778888899999999999999999999999


Q ss_pred             CcEEEEEEeCCCchhHHHHHHHHHHHHhhhC-CCCCEEEEeeCCcccCCcccccCCCCCCcccHHHHHHHHHHhCCCceE
Q 036449           78 ADVFILAFSLISKASYENVSKKWIPELKHYA-PGVPIILVGTKLDLRDDKQFFIDHPGAVPISTAQGEELRKLIGAPAYI  156 (197)
Q Consensus        78 ~~~~i~v~d~~~~~s~~~~~~~~~~~i~~~~-~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  156 (197)
                      +|++|+|||++++.+++.+ ..|+..+.... ++.|+++|+||+|+.+.+.          +..+++..++...+. +++
T Consensus        81 ~d~vilv~d~~~~~s~~~~-~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~----------~~~~~~~~~~~~~~~-~~~  148 (206)
T 2bcg_Y           81 SHGIIIVYDVTDQESFNGV-KMWLQEIDRYATSTVLKLLVGNKCDLKDKRV----------VEYDVAKEFADANKM-PFL  148 (206)
T ss_dssp             CSEEEEEEETTCHHHHHHH-HHHHHHHHHHSCTTCEEEEEEECTTCTTTCC----------SCHHHHHHHHHHTTC-CEE
T ss_pred             CCEEEEEEECcCHHHHHHH-HHHHHHHHHhcCCCCCEEEEEECCCCccccc----------cCHHHHHHHHHHcCC-eEE
Confidence            9999999999999999998 67888887765 6899999999999976543          567788889998887 899


Q ss_pred             EeccCCCCCHHHHHHHHHHHHcCC
Q 036449          157 ECSSKTQQNVKAVFDAAIRVVLQP  180 (197)
Q Consensus       157 ~~sa~~~~~i~~l~~~i~~~~~~~  180 (197)
                      ++||++|.|++++|++|.+.+.+.
T Consensus       149 ~~Sa~~g~gi~~l~~~l~~~i~~~  172 (206)
T 2bcg_Y          149 ETSALDSTNVEDAFLTMARQIKES  172 (206)
T ss_dssp             ECCTTTCTTHHHHHHHHHHHHHHH
T ss_pred             EEeCCCCCCHHHHHHHHHHHHHHH
Confidence            999999999999999999987654

>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*

Probab=100.00  E-value=4e-35  Score=207.81  Aligned_cols=174  Identities=64%  Similarity=1.077  Sum_probs=148.3

Q ss_pred             CceeEEEEEcCCCCCHHHHHHHHhhCCCCCCCCCceeeeeeEEEEECCeEEEEEEEeCCCccccccccccCcCCCcEEEE
Q 036449            4 SRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFIL   83 (197)
Q Consensus         4 ~~~~~i~v~G~~~~GKstli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~   83 (197)
                      .+.+||+++|.+|||||||++++..+.+...+.++....+.....+++..+.+.+||+||++.+...+..++.++|++++
T Consensus        28 ~~~~ki~vvG~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~  107 (204)
T 4gzl_A           28 GQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGLEDYDRLRPLSYPQTDVFLI  107 (204)
T ss_dssp             --CEEEEEEESTTSSHHHHHHHHHHSCCCC-CCCCSEEEEEEEEECC-CEEEEEEEEECCSGGGTTTGGGGCTTCSEEEE
T ss_pred             CCeEEEEEECcCCCCHHHHHHHHHhCCCCCCcCCeecceeEEEEEECCEEEEEEEEECCCchhhHHHHHHHhccCCEEEE
Confidence            56799999999999999999999999998888898888888788888888999999999999999999999999999999


Q ss_pred             EEeCCCchhHHHHHHHHHHHHhhhCCCCCEEEEeeCCcccCCcccc--cCCCCCCcccHHHHHHHHHHhCCCceEEeccC
Q 036449           84 AFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLRDDKQFF--IDHPGAVPISTAQGEELRKLIGAPAYIECSSK  161 (197)
Q Consensus        84 v~d~~~~~s~~~~~~~~~~~i~~~~~~~~~ivv~nK~D~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~  161 (197)
                      |||++++.+++.+...|+..+....++.|+++|+||+|+.+.....  ........+..+++..+++..+..+++++||+
T Consensus       108 v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~SA~  187 (204)
T 4gzl_A          108 CFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSAL  187 (204)
T ss_dssp             EEETTCHHHHHHHHHTHHHHHHHHCSSCCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEECCTT
T ss_pred             EEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEechhhccchhhhhhhhccccccccHHHHHHHHHhcCCcEEEEeeCC
Confidence            9999999999998558999999888899999999999997653211  01111223567888899999998679999999


Q ss_pred             CCCCHHHHHHHHHHHH
Q 036449          162 TQQNVKAVFDAAIRVV  177 (197)
Q Consensus       162 ~~~~i~~l~~~i~~~~  177 (197)
                      +|.|++++|++|.+.+
T Consensus       188 ~g~gi~~l~~~l~~~~  203 (204)
T 4gzl_A          188 TQRGLKTVFDEAIRAV  203 (204)
T ss_dssp             TCTTHHHHHHHHHHTT
T ss_pred             CCCCHHHHHHHHHHHh
Confidence            9999999999998865

>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8

Probab=100.00  E-value=5.9e-35  Score=206.43  Aligned_cols=165  Identities=32%  Similarity=0.576  Sum_probs=144.6

Q ss_pred             CceeEEEEEcCCCCCHHHHHHHHhhCCCCCCCCCceee-eeeEEEEECCeEEEEEEEeCCCccccccccccCcCCCcEEE
Q 036449            4 SRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFD-NFSANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFI   82 (197)
Q Consensus         4 ~~~~~i~v~G~~~~GKstli~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i   82 (197)
                      ++.++|+++|.+|||||||++++..+.+...+.++.+. .....+.+++..+.+++||+||++.+...+..++.++|++|
T Consensus        24 ~~~~ki~lvG~~~vGKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i  103 (201)
T 2ew1_A           24 DFLFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEINGEKVKLQIWDTAGQERFRSITQSYYRSANALI  103 (201)
T ss_dssp             SEEEEEEEEESTTSSHHHHHHHHHHSSCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHGGGSTTCSEEE
T ss_pred             ccceEEEEECcCCCCHHHHHHHHHhCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHHhcCCEEE
Confidence            45699999999999999999999999888777777754 34556778888899999999999999999999999999999


Q ss_pred             EEEeCCCchhHHHHHHHHHHHHhhhC-CCCCEEEEeeCCcccCCcccccCCCCCCcccHHHHHHHHHHhCCCceEEeccC
Q 036449           83 LAFSLISKASYENVSKKWIPELKHYA-PGVPIILVGTKLDLRDDKQFFIDHPGAVPISTAQGEELRKLIGAPAYIECSSK  161 (197)
Q Consensus        83 ~v~d~~~~~s~~~~~~~~~~~i~~~~-~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~  161 (197)
                      +|||++++.+++.+ ..|+..+.... ++.|+++|+||+|+.+.+.          +..+++..++...+. +++++||+
T Consensus       104 ~v~D~~~~~s~~~~-~~~~~~i~~~~~~~~piilv~NK~Dl~~~~~----------v~~~~~~~~~~~~~~-~~~~~Sa~  171 (201)
T 2ew1_A          104 LTYDITCEESFRCL-PEWLREIEQYASNKVITVLVGNKIDLAERRE----------VSQQRAEEFSEAQDM-YYLETSAK  171 (201)
T ss_dssp             EEEETTCHHHHHTH-HHHHHHHHHHSCTTCEEEEEEECGGGGGGCS----------SCHHHHHHHHHHHTC-CEEECCTT
T ss_pred             EEEECCCHHHHHHH-HHHHHHHHHhcCCCCCEEEEEECCCCccccc----------cCHHHHHHHHHHcCC-EEEEEeCC
Confidence            99999999999998 78888887765 5799999999999976443          667788889888887 89999999


Q ss_pred             CCCCHHHHHHHHHHHHcCC
Q 036449          162 TQQNVKAVFDAAIRVVLQP  180 (197)
Q Consensus       162 ~~~~i~~l~~~i~~~~~~~  180 (197)
                      +|.|++++|++|.+.+...
T Consensus       172 ~g~gv~~l~~~l~~~i~~~  190 (201)
T 2ew1_A          172 ESDNVEKLFLDLACRLISE  190 (201)
T ss_dssp             TCTTHHHHHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHHH
Confidence            9999999999999988653

>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.4e-34  Score=207.66  Aligned_cols=169  Identities=30%  Similarity=0.510  Sum_probs=138.4

Q ss_pred             CCceeEEEEEcCCCCCHHHHHHHHhhCCCCCCCCCceeeee-eEEEEECCeEEEEEEEeCCCccccccccccCcCCCcEE
Q 036449            3 ASRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNF-SANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVF   81 (197)
Q Consensus         3 ~~~~~~i~v~G~~~~GKstli~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~   81 (197)
                      ....++|+|+|.+|+|||||+++|..+.+...+.++.+..+ ...+.+++..+.+.+||+||++.|..++..++..+|++
T Consensus        10 ~~~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~v   89 (223)
T 3cpj_B           10 YDLLFKIVLIGDSGVGKSNLLSRFTKNEFNMDSKSTIGVEFATRTLEIEGKRIKAQIWDTAGQERYRAITSAYYRGAVGA   89 (223)
T ss_dssp             CCEEEEEEEESCTTSSHHHHHHHHHHCCCCC------CCSEEEEEEEETTEEEEEEEECCTTTTTTTCCCGGGTTTCCEE
T ss_pred             CCeeeEEEEECcCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEEECCEEEEEEEEECCCccchhhhHHHHhccCCEE
Confidence            35669999999999999999999999998877777775444 45567788888999999999999999999999999999


Q ss_pred             EEEEeCCCchhHHHHHHHHHHHHhhhC-CCCCEEEEeeCCcccCCcccccCCCCCCcccHHHHHHHHHHhCCCceEEecc
Q 036449           82 ILAFSLISKASYENVSKKWIPELKHYA-PGVPIILVGTKLDLRDDKQFFIDHPGAVPISTAQGEELRKLIGAPAYIECSS  160 (197)
Q Consensus        82 i~v~d~~~~~s~~~~~~~~~~~i~~~~-~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa  160 (197)
                      |+|||++++.+++.+ ..|+..+.... ++.|+++|+||+|+.+.+.          +..+++..+++..+. +++++||
T Consensus        90 ilV~D~~~~~s~~~~-~~~l~~i~~~~~~~~piilv~nK~Dl~~~~~----------v~~~~~~~~~~~~~~-~~~~~Sa  157 (223)
T 3cpj_B           90 LIVYDISKSSSYENC-NHWLSELRENADDNVAVGLIGNKSDLAHLRA----------VPTEESKTFAQENQL-LFTETSA  157 (223)
T ss_dssp             EEEEC-CCHHHHHHH-HHHHHHHHHHCC--CEEEEEECCGGGGGGCC----------SCHHHHHHHHHHTTC-EEEECCC
T ss_pred             EEEEeCCCHHHHHHH-HHHHHHHHHhCCCCCeEEEEEECcccccccc----------cCHHHHHHHHHHcCC-EEEEEeC
Confidence            999999999999998 78888887765 5899999999999976443          567788889998887 8999999


Q ss_pred             CCCCCHHHHHHHHHHHHcCCCch
Q 036449          161 KTQQNVKAVFDAAIRVVLQPPKT  183 (197)
Q Consensus       161 ~~~~~i~~l~~~i~~~~~~~~~~  183 (197)
                      +++.|++++|++|.+.+......
T Consensus       158 ~~~~gi~~l~~~l~~~i~~~~~~  180 (223)
T 3cpj_B          158 LNSENVDKAFEELINTIYQKVSK  180 (223)
T ss_dssp             C-CCCHHHHHHHHHHHHTTCC--
T ss_pred             CCCCCHHHHHHHHHHHHHHHhhh
Confidence            99999999999999998876443

>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*

Probab=100.00  E-value=7.2e-35  Score=199.82  Aligned_cols=163  Identities=29%  Similarity=0.540  Sum_probs=142.5

Q ss_pred             ceeEEEEEcCCCCCHHHHHHHHhhCCCCCCCCCceeeeeeEEEEECCeEEEEEEEeCCCccccccccccCcCCCcEEEEE
Q 036449            5 RFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILA   84 (197)
Q Consensus         5 ~~~~i~v~G~~~~GKstli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v   84 (197)
                      +.++|+++|.+|+|||||++++..+.+...+.++.+..+.....+++..+.+.+||+||++.+...+..++.++|++++|
T Consensus         2 ~~~ki~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v   81 (167)
T 1c1y_A            2 REYKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDCQQCMLEILDTAGTEQFTAMRDLYMKNGQGFALV   81 (167)
T ss_dssp             CEEEEEEECSTTSSHHHHHHHHHHCCCCCSCCCCSEEEEEEEEESSSCEEEEEEEEECSSCSSTTHHHHHHHHCSEEEEE
T ss_pred             ceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCCccceEEEEEEECCEEEEEEEEECCChHHHHHHHHHHhccCCEEEEE
Confidence            46899999999999999999999999888888888877777777788889999999999999999999999999999999


Q ss_pred             EeCCCchhHHHHHHHHHHHHhhh--CCCCCEEEEeeCCcccCCcccccCCCCCCcccHHHHHHHHHHhCCCceEEeccCC
Q 036449           85 FSLISKASYENVSKKWIPELKHY--APGVPIILVGTKLDLRDDKQFFIDHPGAVPISTAQGEELRKLIGAPAYIECSSKT  162 (197)
Q Consensus        85 ~d~~~~~s~~~~~~~~~~~i~~~--~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~  162 (197)
                      ||++++.+++.+ ..|+..+...  .++.|+++|+||+|+.+.+.          +..+++..+++.++..+++++||++
T Consensus        82 ~d~~~~~s~~~~-~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~----------~~~~~~~~~~~~~~~~~~~~~Sa~~  150 (167)
T 1c1y_A           82 YSITAQSTFNDL-QDLREQILRVKDTEDVPMILVGNKCDLEDERV----------VGKEQGQNLARQWCNCAFLESSAKS  150 (167)
T ss_dssp             EETTCHHHHHTH-HHHHHHHHHHHCCSCCCEEEEEECTTCGGGCC----------SCHHHHHHHHHHTTSCEEEECBTTT
T ss_pred             EECCCHHHHHHH-HHHHHHHHHhhCcCCCcEEEEEECcccccccc----------CCHHHHHHHHHHccCCcEEEecCCC
Confidence            999999999998 6677766654  25899999999999976543          5677888888888444899999999


Q ss_pred             CCCHHHHHHHHHHHHc
Q 036449          163 QQNVKAVFDAAIRVVL  178 (197)
Q Consensus       163 ~~~i~~l~~~i~~~~~  178 (197)
                      |.|++++|++|.+.+.
T Consensus       151 ~~gi~~l~~~l~~~i~  166 (167)
T 1c1y_A          151 KINVNEIFYDLVRQIN  166 (167)
T ss_dssp             TBSHHHHHHHHHHHHT
T ss_pred             CCCHHHHHHHHHHHHh
Confidence            9999999999998774

>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*

Probab=100.00  E-value=6e-35  Score=200.22  Aligned_cols=163  Identities=33%  Similarity=0.568  Sum_probs=142.3

Q ss_pred             ceeEEEEEcCCCCCHHHHHHHHhhCCCCCCCCCceeeeeeEEEEECCeEEEEEEEeCCCccccccccccCcCCCcEEEEE
Q 036449            5 RFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILA   84 (197)
Q Consensus         5 ~~~~i~v~G~~~~GKstli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v   84 (197)
                      +.++|+++|.+|+|||||++++..+.+...+.++.+..+.....+++..+.+.+||+||++.+...+..++..+|++++|
T Consensus         3 ~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v   82 (168)
T 1u8z_A            3 ALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGEGFLCV   82 (168)
T ss_dssp             CEEEEEEECSTTSSHHHHHHHHHHSCCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCC---CHHHHHHHHHHCSEEEEE
T ss_pred             ceEEEEEECCCCCCHHHHHHHHHhCccCCCCCCCcceEEEEEEEECCEEEEEEEEECCCcchhHHHHHHHhhcCCEEEEE
Confidence            56899999999999999999999999888888888777777778888889999999999999999999999999999999


Q ss_pred             EeCCCchhHHHHHHHHHHHHhhhC--CCCCEEEEeeCCcccCCcccccCCCCCCcccHHHHHHHHHHhCCCceEEeccCC
Q 036449           85 FSLISKASYENVSKKWIPELKHYA--PGVPIILVGTKLDLRDDKQFFIDHPGAVPISTAQGEELRKLIGAPAYIECSSKT  162 (197)
Q Consensus        85 ~d~~~~~s~~~~~~~~~~~i~~~~--~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~  162 (197)
                      ||++++++++.+ ..|+..+....  ++.|+++|+||+|+.+.+.          +..+++..+++.++. +++++||++
T Consensus        83 ~d~~~~~s~~~~-~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~----------~~~~~~~~~~~~~~~-~~~~~Sa~~  150 (168)
T 1u8z_A           83 FSITEMESFAAT-ADFREQILRVKEDENVPFLLVGNKSDLEDKRQ----------VSVEEAKNRADQWNV-NYVETSAKT  150 (168)
T ss_dssp             EETTCHHHHHHH-HHHHHHHHHHHCCTTSCEEEEEECGGGGGGCC----------SCHHHHHHHHHHHTC-EEEECCTTT
T ss_pred             EECCCHHHHHHH-HHHHHHHHHhcCCCCCcEEEEEECccccccCc----------cCHHHHHHHHHHcCC-eEEEeCCCC
Confidence            999999999998 77877777655  3899999999999976543          667888899999998 899999999


Q ss_pred             CCCHHHHHHHHHHHHcC
Q 036449          163 QQNVKAVFDAAIRVVLQ  179 (197)
Q Consensus       163 ~~~i~~l~~~i~~~~~~  179 (197)
                      +.|++++|++|.+.+.+
T Consensus       151 ~~gi~~l~~~l~~~i~~  167 (168)
T 1u8z_A          151 RANVDKVFFDLMREIRA  167 (168)
T ss_dssp             CTTHHHHHHHHHHHHHT
T ss_pred             CCCHHHHHHHHHHHHHh
Confidence            99999999999998754

>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*

Probab=100.00  E-value=1.1e-34  Score=199.26  Aligned_cols=165  Identities=30%  Similarity=0.546  Sum_probs=142.7

Q ss_pred             CCceeEEEEEcCCCCCHHHHHHHHhhCCCCCCCCCceeeee-eEEEEECCeEEEEEEEeCCCccccccccccCcCCCcEE
Q 036449            3 ASRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNF-SANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVF   81 (197)
Q Consensus         3 ~~~~~~i~v~G~~~~GKstli~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~   81 (197)
                      +.+.++|+++|.+|+|||||++++..+.+...+.++.+..+ .....+++..+.+.+||+||++.+...+..++..+|++
T Consensus         3 ~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~~   82 (170)
T 1r2q_A            3 KICQFKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAA   82 (170)
T ss_dssp             EEEEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGHHHHHTTCSEE
T ss_pred             CCceEEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCCcHHhhhhhHHhccCCCEE
Confidence            35679999999999999999999999988877777765444 45566788889999999999999999999999999999


Q ss_pred             EEEEeCCCchhHHHHHHHHHHHHhhhC-CCCCEEEEeeCCcccCCcccccCCCCCCcccHHHHHHHHHHhCCCceEEecc
Q 036449           82 ILAFSLISKASYENVSKKWIPELKHYA-PGVPIILVGTKLDLRDDKQFFIDHPGAVPISTAQGEELRKLIGAPAYIECSS  160 (197)
Q Consensus        82 i~v~d~~~~~s~~~~~~~~~~~i~~~~-~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa  160 (197)
                      ++|||++++.+++.+ ..|+..+.... ++.|+++|+||+|+.+.+.          +..+++..++...+. +++++||
T Consensus        83 i~v~d~~~~~s~~~~-~~~~~~~~~~~~~~~~iilv~nK~Dl~~~~~----------~~~~~~~~~~~~~~~-~~~~~Sa  150 (170)
T 1r2q_A           83 IVVYDITNEESFARA-KNWVKELQRQASPNIVIALSGNKADLANKRA----------VDFQEAQSYADDNSL-LFMETSA  150 (170)
T ss_dssp             EEEEETTCHHHHHHH-HHHHHHHHHHSCTTCEEEEEEECGGGGGGCC----------SCHHHHHHHHHHTTC-EEEECCT
T ss_pred             EEEEECCCHHHHHHH-HHHHHHHHHhcCCCCcEEEEEECccCccccc----------cCHHHHHHHHHHcCC-eEEEEeC
Confidence            999999999999998 67887777664 7899999999999976443          567788889888887 8999999


Q ss_pred             CCCCCHHHHHHHHHHHHcC
Q 036449          161 KTQQNVKAVFDAAIRVVLQ  179 (197)
Q Consensus       161 ~~~~~i~~l~~~i~~~~~~  179 (197)
                      ++|.|++++|++|.+.+.+
T Consensus       151 ~~g~gi~~l~~~i~~~~~~  169 (170)
T 1r2q_A          151 KTSMNVNEIFMAIAKKLPK  169 (170)
T ss_dssp             TTCTTHHHHHHHHHHTSCC
T ss_pred             CCCCCHHHHHHHHHHHHhh
Confidence            9999999999999987653

>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*

Probab=100.00  E-value=6.6e-35  Score=203.53  Aligned_cols=166  Identities=28%  Similarity=0.496  Sum_probs=144.5

Q ss_pred             CceeEEEEEcCCCCCHHHHHHHHhhCCCCCCCCCceee-eeeEEEEECCeEEEEEEEeCCCccccccccccCcCCCcEEE
Q 036449            4 SRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFD-NFSANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFI   82 (197)
Q Consensus         4 ~~~~~i~v~G~~~~GKstli~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i   82 (197)
                      ++.++|+++|.+|||||||++++..+.+...+.++.+. .....+.+++..+.+.+||+||++.+...+..++.++|++|
T Consensus         8 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i   87 (186)
T 2bme_A            8 DFLFKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGQERFRSVTRSYYRGAAGAL   87 (186)
T ss_dssp             SEEEEEEEEESTTSSHHHHHHHHHHSSCCTTCCCCSEEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHTTSTTCSEEE
T ss_pred             ccceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHHhcCCEEE
Confidence            45799999999999999999999999888777777754 34556677888889999999999999999999999999999


Q ss_pred             EEEeCCCchhHHHHHHHHHHHHhhhC-CCCCEEEEeeCCcccCCcccccCCCCCCcccHHHHHHHHHHhCCCceEEeccC
Q 036449           83 LAFSLISKASYENVSKKWIPELKHYA-PGVPIILVGTKLDLRDDKQFFIDHPGAVPISTAQGEELRKLIGAPAYIECSSK  161 (197)
Q Consensus        83 ~v~d~~~~~s~~~~~~~~~~~i~~~~-~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~  161 (197)
                      +|||++++.+++.+ ..|+..+.... ++.|+++|+||+|+.+.+.          +..+++..++...+. +++++||+
T Consensus        88 ~v~d~~~~~s~~~~-~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~----------~~~~~~~~~~~~~~~-~~~~~Sa~  155 (186)
T 2bme_A           88 LVYDITSRETYNAL-TNWLTDARMLASQNIVIILCGNKKDLDADRE----------VTFLEASRFAQENEL-MFLETSAL  155 (186)
T ss_dssp             EEEETTCHHHHHTH-HHHHHHHHHHSCTTCEEEEEEECGGGGGGCC----------SCHHHHHHHHHHTTC-EEEECCTT
T ss_pred             EEEECcCHHHHHHH-HHHHHHHHHhcCCCCcEEEEEECcccccccc----------cCHHHHHHHHHHcCC-EEEEecCC
Confidence            99999999999998 68887777655 6899999999999975443          567788889998887 89999999


Q ss_pred             CCCCHHHHHHHHHHHHcCCC
Q 036449          162 TQQNVKAVFDAAIRVVLQPP  181 (197)
Q Consensus       162 ~~~~i~~l~~~i~~~~~~~~  181 (197)
                      ++.|++++|+++.+.+.+..
T Consensus       156 ~~~gi~~l~~~l~~~~~~~~  175 (186)
T 2bme_A          156 TGENVEEAFVQCARKILNKI  175 (186)
T ss_dssp             TCTTHHHHHHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHHHh
Confidence            99999999999999887543

>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}

Probab=100.00  E-value=3e-35  Score=208.01  Aligned_cols=166  Identities=30%  Similarity=0.534  Sum_probs=138.4

Q ss_pred             CceeEEEEEcCCCCCHHHHHHHHhhCCCCCCCCCceeeee-eEEEEECCeEEEEEEEeCCCccccccccccCcCCCcEEE
Q 036449            4 SRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNF-SANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFI   82 (197)
Q Consensus         4 ~~~~~i~v~G~~~~GKstli~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i   82 (197)
                      ++.++|+++|.+|+|||||++++..+.+...+.+|.+..+ ...+.+++..+.+.+||+||++++...+..++.++|++|
T Consensus        27 ~~~~ki~vvG~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~ii  106 (201)
T 2hup_A           27 DFLFKLVLVGDASVGKTCVVQRFKTGAFSERQGSTIGVDFTMKTLEIQGKRVKLQIWDTAGQERFRTITQSYYRSANGAI  106 (201)
T ss_dssp             CEEEEEEEEECTTSSHHHHHHHHHHSCC----------CEEEEEEEETTEEEEEEEECCTTCGGGHHHHHHHHTTCSEEE
T ss_pred             ccceEEEEECcCCCCHHHHHHHHhhCCCCCCCCCCcceEEEEEEEEECCEEEEEEEEECCCcHhHHHHHHHHHhhCCEEE
Confidence            4569999999999999999999999998877777775443 566777888899999999999999999999999999999


Q ss_pred             EEEeCCCchhHHHHHHHHHHHHhhhC-CCCCEEEEeeCCcccCCcccccCCCCCCcccHHHHHHHHHHhCCCceEEeccC
Q 036449           83 LAFSLISKASYENVSKKWIPELKHYA-PGVPIILVGTKLDLRDDKQFFIDHPGAVPISTAQGEELRKLIGAPAYIECSSK  161 (197)
Q Consensus        83 ~v~d~~~~~s~~~~~~~~~~~i~~~~-~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~  161 (197)
                      +|||++++++++.+ ..|+..+.... ++.|+++|+||+|+...+.          +..++++++++..+..+++++||+
T Consensus       107 lv~D~~~~~s~~~~-~~~~~~i~~~~~~~~piilv~NK~Dl~~~~~----------v~~~~~~~~~~~~~~~~~~~~SA~  175 (201)
T 2hup_A          107 LAYDITKRSSFLSV-PHWIEDVRKYAGSNIVQLLIGNKSDLSELRE----------VSLAEAQSLAEHYDILCAIETSAK  175 (201)
T ss_dssp             EEEETTBHHHHHTH-HHHHHHHHHHSCTTCEEEEEEECTTCGGGCC----------SCHHHHHHHHHHTTCSEEEECBTT
T ss_pred             EEEECCCHHHHHHH-HHHHHHHHHhcCCCCCEEEEEECCccccccc----------cCHHHHHHHHHHcCCCEEEEEeCC
Confidence            99999999999998 68888888766 6899999999999976443          667888899999887689999999


Q ss_pred             CCCCHHHHHHHHHHHHcCC
Q 036449          162 TQQNVKAVFDAAIRVVLQP  180 (197)
Q Consensus       162 ~~~~i~~l~~~i~~~~~~~  180 (197)
                      ++.|++++|++|.+.+...
T Consensus       176 ~g~gi~~l~~~l~~~i~~~  194 (201)
T 2hup_A          176 DSSNVEEAFLRVATELIMR  194 (201)
T ss_dssp             TTBSHHHHHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHHh
Confidence            9999999999999988643

>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*

Probab=100.00  E-value=1.7e-34  Score=200.59  Aligned_cols=166  Identities=34%  Similarity=0.571  Sum_probs=143.0

Q ss_pred             CceeEEEEEcCCCCCHHHHHHHHhhCCCCCCCCCceeeee-eEEEEECCeEEEEEEEeCCCccccccccccCcCCCcEEE
Q 036449            4 SRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNF-SANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFI   82 (197)
Q Consensus         4 ~~~~~i~v~G~~~~GKstli~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i   82 (197)
                      .+.++|+++|.+|+|||||++++....+...+.++.+..+ .....+++..+.+.+||+||++.+...+..++..+|++|
T Consensus        10 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i   89 (181)
T 2efe_B           10 SINAKLVLLGDVGAGKSSLVLRFVKDQFVEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAI   89 (181)
T ss_dssp             CEEEEEEEECCTTSCHHHHHHHHHHCCCTTTSCCCSCCSEEEEEEEETTEEEEEEEEECCCSGGGGGGTHHHHTTCSEEE
T ss_pred             ccceEEEEECcCCCCHHHHHHHHHcCCCCCcCCCCceeEEEEEEEEECCEEEEEEEEeCCCChhhhhhhHHHhccCCEEE
Confidence            4569999999999999999999999988877767765443 455667888889999999999999999999999999999


Q ss_pred             EEEeCCCchhHHHHHHHHHHHHhhhC-CCCCEEEEeeCCcccCCcccccCCCCCCcccHHHHHHHHHHhCCCceEEeccC
Q 036449           83 LAFSLISKASYENVSKKWIPELKHYA-PGVPIILVGTKLDLRDDKQFFIDHPGAVPISTAQGEELRKLIGAPAYIECSSK  161 (197)
Q Consensus        83 ~v~d~~~~~s~~~~~~~~~~~i~~~~-~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~  161 (197)
                      +|||++++.+++.+ ..|+..+.... ++.|+++|+||+|+.+.+.          +..++++.+++..+. +++++||+
T Consensus        90 ~v~d~~~~~s~~~~-~~~~~~~~~~~~~~~p~i~v~nK~Dl~~~~~----------~~~~~~~~~~~~~~~-~~~~~Sa~  157 (181)
T 2efe_B           90 IVFDVTNQASFERA-KKWVQELQAQGNPNMVMALAGNKSDLLDARK----------VTAEDAQTYAQENGL-FFMETSAK  157 (181)
T ss_dssp             EEEETTCHHHHHHH-HHHHHHHHHHSCTTCEEEEEEECTTCTTTCC----------SCHHHHHHHHHHTTC-EEEECCSS
T ss_pred             EEEECCCHHHHHHH-HHHHHHHHHhcCCCCcEEEEEECCccccccc----------CCHHHHHHHHHHcCC-EEEEEECC
Confidence            99999999999988 78888887765 6899999999999976443          667888899998888 89999999


Q ss_pred             CCCCHHHHHHHHHHHHcCCC
Q 036449          162 TQQNVKAVFDAAIRVVLQPP  181 (197)
Q Consensus       162 ~~~~i~~l~~~i~~~~~~~~  181 (197)
                      ++.|++++|++|.+.+...+
T Consensus       158 ~g~gi~~l~~~l~~~~~~~~  177 (181)
T 2efe_B          158 TATNVKEIFYEIARRLPRVQ  177 (181)
T ss_dssp             SCTTHHHHHHHHHHTCC---
T ss_pred             CCCCHHHHHHHHHHHHHhcC
Confidence            99999999999999886654

>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*

Probab=100.00  E-value=1.4e-34  Score=198.60  Aligned_cols=165  Identities=35%  Similarity=0.538  Sum_probs=143.4

Q ss_pred             CCceeEEEEEcCCCCCHHHHHHHHhhCCCCCCCCCceee-eeeEEEEECCeEEEEEEEeCCCccccccccccCcCCCcEE
Q 036449            3 ASRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFD-NFSANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVF   81 (197)
Q Consensus         3 ~~~~~~i~v~G~~~~GKstli~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~   81 (197)
                      .++.++|+++|.+|+|||||++++.++.+...+.++.+. .....+.+++..+.+.+||+||++.+...+..++..+|++
T Consensus         2 ~~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~   81 (168)
T 1z2a_A            2 SEVAIKMVVVGNGAVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIQVNDEDVRLMLWDTAGQEEFDAITKAYYRGAQAC   81 (168)
T ss_dssp             --CEEEEEEECSTTSSHHHHHHHHHHCCCCCCSSCCCSSSEEEEEEEETTEEEEEEEECCTTGGGTTCCCHHHHTTCCEE
T ss_pred             CceeEEEEEECcCCCCHHHHHHHHHcCCCCCCCCCceEEEEEEEEEEECCEEEEEEEEcCCCcHhHHHHHHHHhcCCCEE
Confidence            356799999999999999999999999888777777753 4455667788888999999999999999999999999999


Q ss_pred             EEEEeCCCchhHHHHHHHHHHHHhhhCCCCCEEEEeeCCcccCCcccccCCCCCCcccHHHHHHHHHHhCCCceEEeccC
Q 036449           82 ILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPISTAQGEELRKLIGAPAYIECSSK  161 (197)
Q Consensus        82 i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~  161 (197)
                      ++|||++++.+++.+ ..|+..+....++.|+++|+||+|+.+.+.          +..++++.+++..+. +++++||+
T Consensus        82 i~v~d~~~~~s~~~~-~~~~~~i~~~~~~~piilv~nK~Dl~~~~~----------~~~~~~~~~~~~~~~-~~~~~Sa~  149 (168)
T 1z2a_A           82 VLVFSTTDRESFEAI-SSWREKVVAEVGDIPTALVQNKIDLLDDSC----------IKNEEAEGLAKRLKL-RFYRTSVK  149 (168)
T ss_dssp             EEEEETTCHHHHHTH-HHHHHHHHHHHCSCCEEEEEECGGGGGGCS----------SCHHHHHHHHHHHTC-EEEECBTT
T ss_pred             EEEEECcCHHHHHHH-HHHHHHHHHhCCCCCEEEEEECcccCcccc----------cCHHHHHHHHHHcCC-eEEEEecC
Confidence            999999999999988 678887776667899999999999976443          567788889999998 99999999


Q ss_pred             CCCCHHHHHHHHHHHHcC
Q 036449          162 TQQNVKAVFDAAIRVVLQ  179 (197)
Q Consensus       162 ~~~~i~~l~~~i~~~~~~  179 (197)
                      ++.|++++|++|.+.+.+
T Consensus       150 ~~~~i~~l~~~l~~~~~~  167 (168)
T 1z2a_A          150 EDLNVSEVFKYLAEKHLQ  167 (168)
T ss_dssp             TTBSSHHHHHHHHHHHHC
T ss_pred             CCCCHHHHHHHHHHHHhh
Confidence            999999999999988764

>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*

Probab=100.00  E-value=8.2e-35  Score=204.12  Aligned_cols=164  Identities=28%  Similarity=0.577  Sum_probs=140.2

Q ss_pred             CceeEEEEEcCCCCCHHHHHHHHhhCCCCCCCCCceeeee-eEEEEECCeEEEEEEEeCCCccccccccccCcCCCcEEE
Q 036449            4 SRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNF-SANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFI   82 (197)
Q Consensus         4 ~~~~~i~v~G~~~~GKstli~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i   82 (197)
                      .+.+||+++|.+|+|||||++++..+.+...+.++.+..+ ...+.+++..+.+++||+||++.+...+..++.++|++|
T Consensus        19 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii   98 (191)
T 2a5j_A           19 SYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVNIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGAL   98 (191)
T ss_dssp             CEEEEEEEESSTTSSHHHHHHHHHHSCCCC-----CCSSEEEEEEEETTEEEEEEEECCTTGGGTSCCCHHHHTTCSEEE
T ss_pred             CcceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEEECCEEEEEEEEECCCchhhhhhHHHHhccCCEEE
Confidence            4669999999999999999999999988777777765444 456677888899999999999999999999999999999


Q ss_pred             EEEeCCCchhHHHHHHHHHHHHhhhC-CCCCEEEEeeCCcccCCcccccCCCCCCcccHHHHHHHHHHhCCCceEEeccC
Q 036449           83 LAFSLISKASYENVSKKWIPELKHYA-PGVPIILVGTKLDLRDDKQFFIDHPGAVPISTAQGEELRKLIGAPAYIECSSK  161 (197)
Q Consensus        83 ~v~d~~~~~s~~~~~~~~~~~i~~~~-~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~  161 (197)
                      +|||++++.+++.+ ..|+..+.... ++.|+++|+||+|+.+.+.          +..++++.+++..+. +++++||+
T Consensus        99 ~v~d~~~~~s~~~~-~~~l~~i~~~~~~~~piilv~nK~Dl~~~~~----------v~~~~~~~~~~~~~~-~~~~~Sa~  166 (191)
T 2a5j_A           99 LVYDITRRETFNHL-TSWLEDARQHSSSNMVIMLIGNKSDLESRRD----------VKREEGEAFAREHGL-IFMETSAK  166 (191)
T ss_dssp             EEEETTCHHHHHTH-HHHHHHHHHHSCTTCEEEEEEECTTCGGGCC----------SCHHHHHHHHHHHTC-EEEEECTT
T ss_pred             EEEECCCHHHHHHH-HHHHHHHHHhcCCCCCEEEEEECcccCCccc----------cCHHHHHHHHHHcCC-EEEEEeCC
Confidence            99999999999998 67888887765 6899999999999976443          567888899999998 89999999


Q ss_pred             CCCCHHHHHHHHHHHHcC
Q 036449          162 TQQNVKAVFDAAIRVVLQ  179 (197)
Q Consensus       162 ~~~~i~~l~~~i~~~~~~  179 (197)
                      ++.|++++|++|.+.+.+
T Consensus       167 ~~~gi~~l~~~l~~~i~~  184 (191)
T 2a5j_A          167 TACNVEEAFINTAKEIYR  184 (191)
T ss_dssp             TCTTHHHHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHH
Confidence            999999999999998864

>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*

Probab=100.00  E-value=1.5e-34  Score=200.35  Aligned_cols=165  Identities=30%  Similarity=0.588  Sum_probs=143.9

Q ss_pred             CCceeEEEEEcCCCCCHHHHHHHHhhCCCCCCCCCceeeee-eEEEEECCeEEEEEEEeCCCccccccccccCcCCCcEE
Q 036449            3 ASRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNF-SANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVF   81 (197)
Q Consensus         3 ~~~~~~i~v~G~~~~GKstli~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~   81 (197)
                      .++.++|+++|.+|+|||||++++..+.+...+.++.+..+ .....+++..+.+.+||+||++.+...+..++.++|++
T Consensus        12 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~   91 (179)
T 1z0f_A           12 YSYIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQERFRAVTRSYYRGAAGA   91 (179)
T ss_dssp             CSEEEEEEEECSTTSSHHHHHHHHHHSCCCSSCTTSCCCCEEEEEEEETTEEEEEEEEECTTGGGTCHHHHHHHHTCSEE
T ss_pred             cccceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEEEEEEECCeEEEEEEEECCCChHhhhhHHHHhccCCEE
Confidence            34679999999999999999999999998877777775443 55666788889999999999999999999999999999


Q ss_pred             EEEEeCCCchhHHHHHHHHHHHHhhhC-CCCCEEEEeeCCcccCCcccccCCCCCCcccHHHHHHHHHHhCCCceEEecc
Q 036449           82 ILAFSLISKASYENVSKKWIPELKHYA-PGVPIILVGTKLDLRDDKQFFIDHPGAVPISTAQGEELRKLIGAPAYIECSS  160 (197)
Q Consensus        82 i~v~d~~~~~s~~~~~~~~~~~i~~~~-~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa  160 (197)
                      |+|||++++.+++.+ ..|+..+.... ++.|+++|+||+|+.+.+.          +..++++++++..+. +++++||
T Consensus        92 i~v~d~~~~~s~~~~-~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~----------~~~~~~~~~~~~~~~-~~~~~Sa  159 (179)
T 1z0f_A           92 LMVYDITRRSTYNHL-SSWLTDARNLTNPNTVIILIGNKADLEAQRD----------VTYEEAKQFAEENGL-LFLEASA  159 (179)
T ss_dssp             EEEEETTCHHHHHTH-HHHHHHHHHHSCTTCEEEEEEECTTCGGGCC----------SCHHHHHHHHHHTTC-EEEECCT
T ss_pred             EEEEeCcCHHHHHHH-HHHHHHHHHhcCCCCcEEEEEECcccccccc----------cCHHHHHHHHHHcCC-EEEEEeC
Confidence            999999999999998 78888887766 6899999999999976443          567788899999987 8999999


Q ss_pred             CCCCCHHHHHHHHHHHHcC
Q 036449          161 KTQQNVKAVFDAAIRVVLQ  179 (197)
Q Consensus       161 ~~~~~i~~l~~~i~~~~~~  179 (197)
                      +++.|++++|++|.+.+.+
T Consensus       160 ~~~~gi~~l~~~l~~~i~~  178 (179)
T 1z0f_A          160 KTGENVEDAFLEAAKKIYQ  178 (179)
T ss_dssp             TTCTTHHHHHHHHHHHHC-
T ss_pred             CCCCCHHHHHHHHHHHHhh
Confidence            9999999999999998764

>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*

Probab=100.00  E-value=2.7e-34  Score=201.10  Aligned_cols=164  Identities=33%  Similarity=0.641  Sum_probs=143.5

Q ss_pred             CceeEEEEEcCCCCCHHHHHHHHhhCCCCCCCCCceeeee-eEEEEECCeEEEEEEEeCCCccccccccccCcCCCcEEE
Q 036449            4 SRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNF-SANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFI   82 (197)
Q Consensus         4 ~~~~~i~v~G~~~~GKstli~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i   82 (197)
                      ...++|+++|.+|+|||||++++..+.+...+.++.+..+ ......++..+.+.+||+||++.+...+..++..+|++|
T Consensus        20 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii   99 (189)
T 2gf9_A           20 DYMFKLLLIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTVYRHDKRIKLQIWDTAGQERYRTITTAYYRGAMGFL   99 (189)
T ss_dssp             SEEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCCCEEEEEEEEETTEEEEEEEEECCSCCSSCCSGGGGGTTCSEEE
T ss_pred             CceeEEEEECCCCCCHHHHHHHHHcCCCCCCcCCceeEEEEEEEEEECCeEEEEEEEeCCCcHHHhhhHHHhccCCCEEE
Confidence            4569999999999999999999999988777777775444 445667778889999999999999999999999999999


Q ss_pred             EEEeCCCchhHHHHHHHHHHHHhhhC-CCCCEEEEeeCCcccCCcccccCCCCCCcccHHHHHHHHHHhCCCceEEeccC
Q 036449           83 LAFSLISKASYENVSKKWIPELKHYA-PGVPIILVGTKLDLRDDKQFFIDHPGAVPISTAQGEELRKLIGAPAYIECSSK  161 (197)
Q Consensus        83 ~v~d~~~~~s~~~~~~~~~~~i~~~~-~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~  161 (197)
                      +|||++++.+++.+ ..|+..+.... ++.|+++|+||+|+.+.+.          +..++++.+++.++. +++++||+
T Consensus       100 ~v~d~~~~~s~~~~-~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~----------~~~~~~~~~~~~~~~-~~~~~Sa~  167 (189)
T 2gf9_A          100 LMYDIANQESFAAV-QDWATQIKTYSWDNAQVILVGNKCDLEDERV----------VPAEDGRRLADDLGF-EFFEASAK  167 (189)
T ss_dssp             EEEETTCHHHHHTH-HHHHHHHHHHSCTTCEEEEEEECTTCGGGCC----------SCHHHHHHHHHHHTC-EEEECBTT
T ss_pred             EEEECCCHHHHHHH-HHHHHHHHHhcCCCCCEEEEEECcccccccC----------CCHHHHHHHHHHcCC-eEEEEECC
Confidence            99999999999998 67888888765 6899999999999976443          567788899999998 89999999


Q ss_pred             CCCCHHHHHHHHHHHHcC
Q 036449          162 TQQNVKAVFDAAIRVVLQ  179 (197)
Q Consensus       162 ~~~~i~~l~~~i~~~~~~  179 (197)
                      ++.|++++|++|.+.+.+
T Consensus       168 ~g~gi~~l~~~l~~~i~~  185 (189)
T 2gf9_A          168 ENINVKQVFERLVDVICE  185 (189)
T ss_dssp             TTBSHHHHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHH
Confidence            999999999999998753

>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}

Probab=100.00  E-value=1.9e-34  Score=202.75  Aligned_cols=168  Identities=30%  Similarity=0.589  Sum_probs=146.6

Q ss_pred             CceeEEEEEcCCCCCHHHHHHHHhhCCCCCCCCCceee-eeeEEEEECCeEEEEEEEeCCCccccccccccCcCCCcEEE
Q 036449            4 SRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFD-NFSANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFI   82 (197)
Q Consensus         4 ~~~~~i~v~G~~~~GKstli~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i   82 (197)
                      ...+||+++|.+|+|||||++++..+.+...+.++.+. .....+.+++..+.+.+||+||++.+...+..++..+|++|
T Consensus        14 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i   93 (196)
T 3tkl_A           14 DYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGII   93 (196)
T ss_dssp             SEEEEEEEECSTTSSHHHHHHHHHHSCCCSCCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGCTTHHHHHTTCSEEE
T ss_pred             ccceEEEEECcCCCCHHHHHHHHHcCCCCCCCCCcccceEEEEEEEECCEEEEEEEEECCCcHhhhhhHHHHHhhCCEEE
Confidence            35699999999999999999999999988777777754 44566777888899999999999999999999999999999


Q ss_pred             EEEeCCCchhHHHHHHHHHHHHhhhC-CCCCEEEEeeCCcccCCcccccCCCCCCcccHHHHHHHHHHhCCCceEEeccC
Q 036449           83 LAFSLISKASYENVSKKWIPELKHYA-PGVPIILVGTKLDLRDDKQFFIDHPGAVPISTAQGEELRKLIGAPAYIECSSK  161 (197)
Q Consensus        83 ~v~d~~~~~s~~~~~~~~~~~i~~~~-~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~  161 (197)
                      +|||++++.+++.+ ..|+..+.... ++.|+++|+||+|+.+.+.          +..+++..++..++. +++++||+
T Consensus        94 ~v~d~~~~~s~~~~-~~~~~~i~~~~~~~~p~ilv~nK~Dl~~~~~----------~~~~~~~~~~~~~~~-~~~~~Sa~  161 (196)
T 3tkl_A           94 VVYDVTDQESFNNV-KQWLQEIDRYASENVNKLLVGNKCDLTTKKV----------VDYTTAKEFADSLGI-PFLETSAK  161 (196)
T ss_dssp             EEEETTCHHHHHTH-HHHHHHHHHHSCTTCEEEEEEECTTCTTTCC----------SCHHHHHHHHHHTTC-CEEEECTT
T ss_pred             EEEECcCHHHHHHH-HHHHHHHHHhcCCCCCEEEEEECcccccccc----------cCHHHHHHHHHHcCC-cEEEEeCC
Confidence            99999999999998 67888887766 5899999999999976554          677888899999998 89999999


Q ss_pred             CCCCHHHHHHHHHHHHcCCCch
Q 036449          162 TQQNVKAVFDAAIRVVLQPPKT  183 (197)
Q Consensus       162 ~~~~i~~l~~~i~~~~~~~~~~  183 (197)
                      ++.|++++|++|.+.+......
T Consensus       162 ~g~gv~~l~~~l~~~i~~~~~~  183 (196)
T 3tkl_A          162 NATNVEQSFMTMAAEIKKRMGP  183 (196)
T ss_dssp             TCTTHHHHHHHHHHHHHHHC--
T ss_pred             CCCCHHHHHHHHHHHHHHHhcc
Confidence            9999999999999988765443

>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8

Probab=100.00  E-value=5.6e-34  Score=197.78  Aligned_cols=167  Identities=34%  Similarity=0.625  Sum_probs=135.4

Q ss_pred             CCceeEEEEEcCCCCCHHHHHHHHhhCCCC-CCCCCceeeee-eEEEEECCeEEEEEEEeCCCccccccccccCcCCCcE
Q 036449            3 ASRFIKCVTVGDGAVGKTCLLISYTSNTFP-TDYVPTVFDNF-SANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGADV   80 (197)
Q Consensus         3 ~~~~~~i~v~G~~~~GKstli~~~~~~~~~-~~~~~~~~~~~-~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~   80 (197)
                      .++.++|+++|.+|+|||||++++..+.+. ..+.++.+..+ .....+++..+.+.+||+||++.+...+..++.++|+
T Consensus         7 ~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~   86 (180)
T 2g6b_A            7 YDVAFKVMLVGDSGVGKTCLLVRFKDGAFLAGTFISTVGIDFRNKVLDVDGVKVKLQMWDTAGQERFRSVTHAYYRDAHA   86 (180)
T ss_dssp             CSEEEEEEEECSTTSSHHHHHHHHHHSCCCCCCCCCCCSCEEEEEEEEETTEEEEEEEEECCCC--------CCGGGCSE
T ss_pred             CCcceEEEEECcCCCCHHHHHHHHHhCCCCCCCcCCceeeEEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHccCCCE
Confidence            356799999999999999999999998875 45566665444 3445678888899999999999999999999999999


Q ss_pred             EEEEEeCCCchhHHHHHHHHHHHHhhhC-CCCCEEEEeeCCcccCCcccccCCCCCCcccHHHHHHHHHHhCCCceEEec
Q 036449           81 FILAFSLISKASYENVSKKWIPELKHYA-PGVPIILVGTKLDLRDDKQFFIDHPGAVPISTAQGEELRKLIGAPAYIECS  159 (197)
Q Consensus        81 ~i~v~d~~~~~s~~~~~~~~~~~i~~~~-~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s  159 (197)
                      +|+|+|++++.+++.+ ..|+..+.... ++.|+++|+||+|+.+.+.          +..+++..+++..+. +++++|
T Consensus        87 ii~v~d~~~~~s~~~~-~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~----------~~~~~~~~~~~~~~~-~~~~~S  154 (180)
T 2g6b_A           87 LLLLYDVTNKASFDNI-QAWLTEIHEYAQHDVALMLLGNKVDSAHERV----------VKREDGEKLAKEYGL-PFMETS  154 (180)
T ss_dssp             EEEEEETTCHHHHHTH-HHHHHHHHHHSCTTCEEEEEEECCSTTSCCC----------SCHHHHHHHHHHHTC-CEEECC
T ss_pred             EEEEEECCCHHHHHHH-HHHHHHHHHhCCCCCcEEEEEECcccCcccc----------cCHHHHHHHHHHcCC-eEEEEe
Confidence            9999999999999998 78888887766 5899999999999976543          567788889999998 899999


Q ss_pred             cCCCCCHHHHHHHHHHHHcCCC
Q 036449          160 SKTQQNVKAVFDAAIRVVLQPP  181 (197)
Q Consensus       160 a~~~~~i~~l~~~i~~~~~~~~  181 (197)
                      |+++.|++++|++|.+.+.+..
T Consensus       155 a~~~~gi~~l~~~l~~~~~~~~  176 (180)
T 2g6b_A          155 AKTGLNVDLAFTAIAKELKRRS  176 (180)
T ss_dssp             TTTCTTHHHHHHHHHHHHHC--
T ss_pred             CCCCCCHHHHHHHHHHHHHHHh
Confidence            9999999999999999887643

>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*

Probab=100.00  E-value=1.2e-34  Score=198.70  Aligned_cols=162  Identities=24%  Similarity=0.386  Sum_probs=119.8

Q ss_pred             ceeEEEEEcCCCCCHHHHHHHHhhCCCCCCCCCceeeeeeEEEEECCeEEEEEEEeCCCccccccccccCcCCCcEEEEE
Q 036449            5 RFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILA   84 (197)
Q Consensus         5 ~~~~i~v~G~~~~GKstli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v   84 (197)
                      +.+||+++|.+|+|||||++++.+..... ..++.+..+.....+++..+.+.+||+||++.+...+..++..+|++++|
T Consensus         1 ~~~ki~~vG~~~~GKSsli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v   79 (166)
T 3q72_A            1 SVYKVLLLGAPGVGKSALARIFGGVEDGP-EAEAAGHTYDRSIVVDGEEASLMVYDIWEQDGGRWLPGHCMAMGDAYVIV   79 (166)
T ss_dssp             CCCEEEEEESTTSSHHHHHHHHCCC-----------CEEEEEEEETTEEEEEEEEECC---------------CCEEEEE
T ss_pred             CeEEEEEECCCCCCHHHHHHHHcCccccC-CCCccccceEEEEEECCEEEEEEEEECCCCccchhhhhhhhhhCCEEEEE
Confidence            35899999999999999999998765543 34455555666777889999999999999999999999999999999999


Q ss_pred             EeCCCchhHHHHHHHHHHHHhhhC--CCCCEEEEeeCCcccCCcccccCCCCCCcccHHHHHHHHHHhCCCceEEeccCC
Q 036449           85 FSLISKASYENVSKKWIPELKHYA--PGVPIILVGTKLDLRDDKQFFIDHPGAVPISTAQGEELRKLIGAPAYIECSSKT  162 (197)
Q Consensus        85 ~d~~~~~s~~~~~~~~~~~i~~~~--~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~  162 (197)
                      ||++++++++.+ ..|+..+....  ++.|+++|+||+|+.+.+.          +..+++..++...+. +++++||++
T Consensus        80 ~d~~~~~s~~~~-~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~----------~~~~~~~~~~~~~~~-~~~~~Sa~~  147 (166)
T 3q72_A           80 YSVTDKGSFEKA-SELRVQLRRARQTDDVPIILVGNKSDLVRSRE----------VSVDEGRACAVVFDC-KFIETSAAL  147 (166)
T ss_dssp             EETTCHHHHHHH-HHHHHHHHHCC---CCCEEEEEECTTCCSSCC----------SCHHHHHHHHHHTTC-EEEECBGGG
T ss_pred             EECCCHHHHHHH-HHHHHHHHHhcCCCCCCEEEEEeccccccccc----------cCHHHHHHHHHHhCC-cEEEeccCC
Confidence            999999999998 67777776543  6899999999999976554          678888899999998 999999999


Q ss_pred             CCCHHHHHHHHHHHHcC
Q 036449          163 QQNVKAVFDAAIRVVLQ  179 (197)
Q Consensus       163 ~~~i~~l~~~i~~~~~~  179 (197)
                      |.|++++|++|.+.+..
T Consensus       148 ~~gi~~l~~~l~~~~~~  164 (166)
T 3q72_A          148 HHNVQALFEGVVRQIRL  164 (166)
T ss_dssp             TBSHHHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHh
Confidence            99999999999998754

>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}

Probab=100.00  E-value=1.2e-34  Score=200.26  Aligned_cols=164  Identities=24%  Similarity=0.374  Sum_probs=128.9

Q ss_pred             CceeEEEEEcCCCCCHHHHHHHHhhCCCCCCCCCceeeeeeEEEEECCeEEEEEEEeCCCccc--cccccccCcCCCcEE
Q 036449            4 SRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQED--YNRLRPLSYRGADVF   81 (197)
Q Consensus         4 ~~~~~i~v~G~~~~GKstli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~--~~~~~~~~~~~~~~~   81 (197)
                      .+.++|+++|.+|+|||||++++.+..+...+.+...+.+...+.+++..+.+.+||+||++.  +..+...++..+|++
T Consensus         2 ~~~~ki~i~G~~~vGKSsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~~~   81 (175)
T 2nzj_A            2 MALYRVVLLGDPGVGKTSLASLFAGKQERDLHEQLGEDVYERTLTVDGEDTTLVVVDTWEAEKLDKSWSQESCLQGGSAY   81 (175)
T ss_dssp             CCEEEEEEECCTTSSHHHHHHHHHCC-----CCCSSSSEEEEEEEETTEEEEEEEECCC-------CHHHHHTTTSCSEE
T ss_pred             ceEEEEEEECCCCccHHHHHHHHhcCCCccccCccccceeEEEEEECCEEEEEEEEecCCCCccchhhhHHhhcccCCEE
Confidence            457999999999999999999999887765544333344556677888888999999999987  556667788999999


Q ss_pred             EEEEeCCCchhHHHHHHHHHHHHhhhC--CCCCEEEEeeCCcccCCcccccCCCCCCcccHHHHHHHHHHhCCCceEEec
Q 036449           82 ILAFSLISKASYENVSKKWIPELKHYA--PGVPIILVGTKLDLRDDKQFFIDHPGAVPISTAQGEELRKLIGAPAYIECS  159 (197)
Q Consensus        82 i~v~d~~~~~s~~~~~~~~~~~i~~~~--~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s  159 (197)
                      ++|||++++.+++.+ ..|+..+....  ++.|+++|+||+|+.+.+.          +..++++.++...+. +++++|
T Consensus        82 i~v~d~~~~~s~~~~-~~~~~~l~~~~~~~~~piilv~NK~Dl~~~~~----------v~~~~~~~~~~~~~~-~~~~~S  149 (175)
T 2nzj_A           82 VIVYSIADRGSFESA-SELRIQLRRTHQADHVPIILVGNKADLARCRE----------VSVEEGRACAVVFDC-KFIETS  149 (175)
T ss_dssp             EEEEETTCHHHHHHH-HHHHHHHHHCC----CCEEEEEECTTCTTTCC----------SCHHHHHHHHHHHTS-EEEECB
T ss_pred             EEEEECCCHHHHHHH-HHHHHHHHHhhccCCCCEEEEEEChhhccccc----------cCHHHHHHHHHHcCC-eEEEEe
Confidence            999999999999998 67877777653  5899999999999976543          567778888888887 899999


Q ss_pred             cCCCCCHHHHHHHHHHHHcC
Q 036449          160 SKTQQNVKAVFDAAIRVVLQ  179 (197)
Q Consensus       160 a~~~~~i~~l~~~i~~~~~~  179 (197)
                      |++|.|++++|++|.+.+..
T Consensus       150 a~~g~gi~~l~~~l~~~~~~  169 (175)
T 2nzj_A          150 ATLQHNVAELFEGVVRQLRL  169 (175)
T ss_dssp             TTTTBSHHHHHHHHHHHHHH
T ss_pred             cCCCCCHHHHHHHHHHHHHH
Confidence            99999999999999998754

>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=100.00  E-value=9.8e-35  Score=204.52  Aligned_cols=166  Identities=31%  Similarity=0.502  Sum_probs=143.4

Q ss_pred             CCCCceeEEEEEcCCCCCHHHHHHHHhhCCCCCCCCCceeeeeeEEEEECCeEEEEEEEeCCCccccccccccCcCCCcE
Q 036449            1 MSASRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGADV   80 (197)
Q Consensus         1 m~~~~~~~i~v~G~~~~GKstli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~   80 (197)
                      |+..+.++|+++|.+|+|||||++++..+.+...+.++.+..+.....+++..+.+.+||+||++. ...+..++..+|+
T Consensus        23 ~~~~~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~-~~~~~~~~~~~d~  101 (196)
T 2atv_A           23 MAKSAEVKLAIFGRAGVGKSALVVRFLTKRFIWEYDPTLESTYRHQATIDDEVVSMEILDTAGQED-TIQREGHMRWGEG  101 (196)
T ss_dssp             ----CCEEEEEECCTTSSHHHHHHHHHHSCCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCCCCC-CHHHHHHHHHCSE
T ss_pred             cCCCCceEEEEECCCCCCHHHHHHHHHhCCCCcccCCCCCceEEEEEEECCEEEEEEEEECCCCCc-ccchhhhhccCCE
Confidence            456678999999999999999999999999988888888877777778888889999999999988 6777788899999


Q ss_pred             EEEEEeCCCchhHHHHHHHHHHHHhhhC--CCCCEEEEeeCCcccCCcccccCCCCCCcccHHHHHHHHHHhCCCceEEe
Q 036449           81 FILAFSLISKASYENVSKKWIPELKHYA--PGVPIILVGTKLDLRDDKQFFIDHPGAVPISTAQGEELRKLIGAPAYIEC  158 (197)
Q Consensus        81 ~i~v~d~~~~~s~~~~~~~~~~~i~~~~--~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  158 (197)
                      +++|||++++++++.+ ..|+..+....  ++.|+++|+||+|+.+.+.          +..+++..+++.++. +++++
T Consensus       102 iilv~D~~~~~s~~~~-~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~----------v~~~~~~~~~~~~~~-~~~~~  169 (196)
T 2atv_A          102 FVLVYDITDRGSFEEV-LPLKNILDEIKKPKNVTLILVGNKADLDHSRQ----------VSTEEGEKLATELAC-AFYEC  169 (196)
T ss_dssp             EEEEEETTCHHHHHTH-HHHHHHHHHHHTTSCCCEEEEEECGGGGGGCC----------SCHHHHHHHHHHHTS-EEEEC
T ss_pred             EEEEEECcCHHHHHHH-HHHHHHHHHhhCCCCCcEEEEEECcccccccc----------cCHHHHHHHHHHhCC-eEEEE
Confidence            9999999999999998 67777776643  5899999999999976543          667888899999987 89999


Q ss_pred             ccCCCC-CHHHHHHHHHHHHcC
Q 036449          159 SSKTQQ-NVKAVFDAAIRVVLQ  179 (197)
Q Consensus       159 sa~~~~-~i~~l~~~i~~~~~~  179 (197)
                      ||+++. |++++|++|.+.+.+
T Consensus       170 Sa~~g~~gi~~l~~~l~~~i~~  191 (196)
T 2atv_A          170 SACTGEGNITEIFYELCREVRR  191 (196)
T ss_dssp             CTTTCTTCHHHHHHHHHHHHHH
T ss_pred             CCCcCCcCHHHHHHHHHHHHHh
Confidence            999999 999999999998754

>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=100.00  E-value=2.8e-34  Score=197.31  Aligned_cols=166  Identities=32%  Similarity=0.552  Sum_probs=142.8

Q ss_pred             ceeEEEEEcCCCCCHHHHHHHHhhCCCCCCCCCceeeee-eEEEEECCeEEEEEEEeCCCccccccccccCcCCCcEEEE
Q 036449            5 RFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNF-SANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFIL   83 (197)
Q Consensus         5 ~~~~i~v~G~~~~GKstli~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~   83 (197)
                      +.++|+++|.+|+|||||++++.++.+...+.++.+..+ .....+++..+.+.+||+||++.+...+..++.++|++++
T Consensus         2 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~~i~   81 (170)
T 1ek0_A            2 TSIKLVLLGEAAVGKSSIVLRFVSNDFAENKEPTIGAAFLTQRVTINEHTVKFEIWDTAGQERFASLAPXYYRNAQAALV   81 (170)
T ss_dssp             EEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGHHHHHTTCSEEEE
T ss_pred             ceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCChhhhhhhhhhhccCcEEEE
Confidence            468999999999999999999999988877777775444 4566678888899999999999999999999999999999


Q ss_pred             EEeCCCchhHHHHHHHHHHHHhhhC-CCCCEEEEeeCCcccCCcccccCCCCCCcccHHHHHHHHHHhCCCceEEeccCC
Q 036449           84 AFSLISKASYENVSKKWIPELKHYA-PGVPIILVGTKLDLRDDKQFFIDHPGAVPISTAQGEELRKLIGAPAYIECSSKT  162 (197)
Q Consensus        84 v~d~~~~~s~~~~~~~~~~~i~~~~-~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~  162 (197)
                      |+|++++.+++.+ ..|+..+.... ++.|+++|+||+|+.+...       ...+..+++..++...+. +++++||++
T Consensus        82 v~d~~~~~s~~~~-~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~-------~~~v~~~~~~~~~~~~~~-~~~~~Sa~~  152 (170)
T 1ek0_A           82 VYDVTKPQSFIKA-RHWVKELHEQASKDIIIALVGNKIDXLQEGG-------ERKVAREEGEKLAEEKGL-LFFETSAKT  152 (170)
T ss_dssp             EEETTCHHHHHHH-HHHHHHHHHHSCTTCEEEEEEECGGGGGSSC-------CCCSCHHHHHHHHHHHTC-EEEECCTTT
T ss_pred             EEecCChHHHHHH-HHHHHHHHHhcCCCCcEEEEEECCCcccccc-------ccCCCHHHHHHHHHHcCC-EEEEEeCCC
Confidence            9999999999998 67888777665 6899999999999976421       233677888889999998 899999999


Q ss_pred             CCCHHHHHHHHHHHHcC
Q 036449          163 QQNVKAVFDAAIRVVLQ  179 (197)
Q Consensus       163 ~~~i~~l~~~i~~~~~~  179 (197)
                      +.|++++|++|.+.+.+
T Consensus       153 ~~gi~~l~~~l~~~i~~  169 (170)
T 1ek0_A          153 GENVNDVFLGIGEKIPL  169 (170)
T ss_dssp             CTTHHHHHHHHHTTSCC
T ss_pred             CCCHHHHHHHHHHHHhh
Confidence            99999999999887643

>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*

Probab=100.00  E-value=5.5e-34  Score=195.94  Aligned_cols=165  Identities=26%  Similarity=0.539  Sum_probs=144.1

Q ss_pred             CCceeEEEEEcCCCCCHHHHHHHHhhCCCCCCCCCceeeee-eEEEEECCeEEEEEEEeCCCccccccccccCcCCCcEE
Q 036449            3 ASRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNF-SANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVF   81 (197)
Q Consensus         3 ~~~~~~i~v~G~~~~GKstli~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~   81 (197)
                      ..+.++|+++|.+|+|||||++++.+..+...+.++.+..+ .....+++..+.+.+||+||++.+...+..++.++|++
T Consensus         3 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~~~~   82 (170)
T 1z0j_A            3 ALRELKVCLLGDTGVGKSSIMWRFVEDSFDPNINPTIGASFMTKTVQYQNELHKFLIWDTAGLERFRALAPMYYRGSAAA   82 (170)
T ss_dssp             SEEEEEEEEECCTTSSHHHHHHHHHHSCCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGTHHHHTTCSEE
T ss_pred             CCcceEEEEECcCCCCHHHHHHHHHcCCCCCCCCCceeEEEEEEEEEECCeEEEEEEEcCCCchhhhcccHhhCcCCCEE
Confidence            35679999999999999999999999998877777776444 45566788889999999999999999999999999999


Q ss_pred             EEEEeCCCchhHHHHHHHHHHHHhhhC-CCCCEEEEeeCCcccCCcccccCCCCCCcccHHHHHHHHHHhCCCceEEecc
Q 036449           82 ILAFSLISKASYENVSKKWIPELKHYA-PGVPIILVGTKLDLRDDKQFFIDHPGAVPISTAQGEELRKLIGAPAYIECSS  160 (197)
Q Consensus        82 i~v~d~~~~~s~~~~~~~~~~~i~~~~-~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa  160 (197)
                      ++|||++++.+++.+ ..|+..+.... ++.|+++|+||+|+.+.+.          +..+++..+++..+. +++++||
T Consensus        83 i~v~d~~~~~s~~~~-~~~~~~l~~~~~~~~~iilv~nK~Dl~~~~~----------v~~~~~~~~~~~~~~-~~~~~Sa  150 (170)
T 1z0j_A           83 IIVYDITKEETFSTL-KNWVRELRQHGPPSIVVAIAGNKCDLTDVRE----------VMERDAKDYADSIHA-IFVETSA  150 (170)
T ss_dssp             EEEEETTCHHHHHHH-HHHHHHHHHHSCTTSEEEEEEECTTCGGGCC----------SCHHHHHHHHHHTTC-EEEECBT
T ss_pred             EEEEECcCHHHHHHH-HHHHHHHHHhCCCCCcEEEEEECCccccccc----------cCHHHHHHHHHHcCC-EEEEEeC
Confidence            999999999999998 78888888764 7899999999999976443          567788889888887 8999999


Q ss_pred             CCCCCHHHHHHHHHHHHcC
Q 036449          161 KTQQNVKAVFDAAIRVVLQ  179 (197)
Q Consensus       161 ~~~~~i~~l~~~i~~~~~~  179 (197)
                      +++.|++++|++|.+.+.+
T Consensus       151 ~~~~~i~~l~~~i~~~i~~  169 (170)
T 1z0j_A          151 KNAININELFIEISRRIPS  169 (170)
T ss_dssp             TTTBSHHHHHHHHHHHCCC
T ss_pred             CCCcCHHHHHHHHHHHHhc
Confidence            9999999999999987753

>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}

Probab=100.00  E-value=8.5e-35  Score=205.50  Aligned_cols=166  Identities=30%  Similarity=0.535  Sum_probs=135.1

Q ss_pred             CCceeEEEEEcCCCCCHHHHHHHHhhCCCCCCCCCceeee-eeEEEEECCeEEEEEEEeCCCccccccccccCcCCCcEE
Q 036449            3 ASRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDN-FSANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVF   81 (197)
Q Consensus         3 ~~~~~~i~v~G~~~~GKstli~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~   81 (197)
                      .++.++|+++|.+|||||||++++..+.+...+.++.+.. ....+.+++..+.+.+||+||++.+...+..++..+|++
T Consensus        22 ~~~~~ki~v~G~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~  101 (200)
T 2o52_A           22 SDFLFKFLVIGSAGTGKSCLLHQFIENKFKQDSNHTIGVEFGSRVVNVGGKTVKLQIWDTAGQERFRSVTRSYYRGAAGA  101 (200)
T ss_dssp             CCEEEEEEEEESTTSSHHHHHHHHHC------------CCEEEEEEEETTEEEEEEEECCTTHHHHSCCCHHHHTTCSEE
T ss_pred             cCcceEEEEECcCCCCHHHHHHHHHhCCCCccCCCcccceeEEEEEEECCeeeEEEEEcCCCcHhHHHHHHHHhccCCEE
Confidence            3567999999999999999999999988877777776533 355666788888999999999999999999999999999


Q ss_pred             EEEEeCCCchhHHHHHHHHHHHHhhhC-CCCCEEEEeeCCcccCCcccccCCCCCCcccHHHHHHHHHHhCCCceEEecc
Q 036449           82 ILAFSLISKASYENVSKKWIPELKHYA-PGVPIILVGTKLDLRDDKQFFIDHPGAVPISTAQGEELRKLIGAPAYIECSS  160 (197)
Q Consensus        82 i~v~d~~~~~s~~~~~~~~~~~i~~~~-~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa  160 (197)
                      |+|||++++.+++.+ ..|+..+.... ++.|+++|+||+|+...+.          +..+++..+++..+. +++++||
T Consensus       102 i~v~d~~~~~s~~~~-~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~----------v~~~~~~~~~~~~~~-~~~~~SA  169 (200)
T 2o52_A          102 LLVYDITSRETYNSL-AAWLTDARTLASPNIVVILCGNKKDLDPERE----------VTFLEASRFAQENEL-MFLETSA  169 (200)
T ss_dssp             EEEEETTCHHHHHTH-HHHHHHHHHHTCTTCEEEEEEECGGGGGGCC----------SCHHHHHHHHHHTTC-EEEEECT
T ss_pred             EEEEECcCHHHHHHH-HHHHHHHHHhcCCCCcEEEEEECCCcccccc----------cCHHHHHHHHHHcCC-EEEEEeC
Confidence            999999999999998 68888777655 6899999999999976443          567788889998887 8999999


Q ss_pred             CCCCCHHHHHHHHHHHHcCC
Q 036449          161 KTQQNVKAVFDAAIRVVLQP  180 (197)
Q Consensus       161 ~~~~~i~~l~~~i~~~~~~~  180 (197)
                      ++|.|++++|++|.+.+...
T Consensus       170 ~~g~gi~~l~~~l~~~i~~~  189 (200)
T 2o52_A          170 LTGENVEEAFLKCARTILNK  189 (200)
T ss_dssp             TTCTTHHHHHHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHHHHH
Confidence            99999999999999988754

>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*

Probab=100.00  E-value=1.6e-34  Score=197.92  Aligned_cols=162  Identities=31%  Similarity=0.583  Sum_probs=142.7

Q ss_pred             ceeEEEEEcCCCCCHHHHHHHHhhCCCCCCCCCceeeeeeEEEEECCeEEEEEEEeCCCccccccccccCcCCCcEEEEE
Q 036449            5 RFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILA   84 (197)
Q Consensus         5 ~~~~i~v~G~~~~GKstli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v   84 (197)
                      +.++|+++|++|+|||||++++..+.+...+.++....+.....+++..+.+.+||+||++.+..++..++..+|++++|
T Consensus         2 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~~~~i~v   81 (167)
T 1kao_A            2 REYKVVVLGSGGVGKSALTVQFVTGTFIEKYDPTIEDFYRKEIEVDSSPSVLEILDTAGTEQFASMRDLYIKNGQGFILV   81 (167)
T ss_dssp             CEEEEEEECCTTSSHHHHHHHHHHSCCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCCTTCCHHHHHHHHHHCSEEEEE
T ss_pred             cEEEEEEECCCCCCHHHHHHHHHcCCCcccCCCCcceeEEEEEEECCEEEEEEEEECCCchhhHHHHHHHhccCCEEEEE
Confidence            46899999999999999999999999888888888777777788888888999999999999999888899999999999


Q ss_pred             EeCCCchhHHHHHHHHHHHHhhhC--CCCCEEEEeeCCcccCCcccccCCCCCCcccHHHHHHHHHHhCCCceEEeccCC
Q 036449           85 FSLISKASYENVSKKWIPELKHYA--PGVPIILVGTKLDLRDDKQFFIDHPGAVPISTAQGEELRKLIGAPAYIECSSKT  162 (197)
Q Consensus        85 ~d~~~~~s~~~~~~~~~~~i~~~~--~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~  162 (197)
                      ||++++.+++.+ ..|...+....  ++.|+++|+||+|+.+.+.          +..+++..+++.++. +++++||++
T Consensus        82 ~d~~~~~s~~~~-~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~----------~~~~~~~~~~~~~~~-~~~~~Sa~~  149 (167)
T 1kao_A           82 YSLVNQQSFQDI-KPMRDQIIRVKRYEKVPVILVGNKVDLESERE----------VSSSEGRALAEEWGC-PFMETSAKS  149 (167)
T ss_dssp             EETTCHHHHHHH-HHHHHHHHHHTTTSCCCEEEEEECGGGGGGCC----------SCHHHHHHHHHHHTS-CEEEECTTC
T ss_pred             EeCCCHHHHHHH-HHHHHHHHHhcCCCCCCEEEEEECCccccccc----------CCHHHHHHHHHHhCC-CEEEecCCC
Confidence            999999999988 66766665543  5899999999999976443          567788889999988 899999999


Q ss_pred             CCCHHHHHHHHHHHHc
Q 036449          163 QQNVKAVFDAAIRVVL  178 (197)
Q Consensus       163 ~~~i~~l~~~i~~~~~  178 (197)
                      |.|++++|++|.+.+.
T Consensus       150 ~~gi~~l~~~l~~~~~  165 (167)
T 1kao_A          150 KTMVDELFAEIVRQMN  165 (167)
T ss_dssp             HHHHHHHHHHHHHHHH
T ss_pred             CcCHHHHHHHHHHHHh
Confidence            9999999999998764

>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*

Probab=100.00  E-value=8.3e-35  Score=201.61  Aligned_cols=167  Identities=28%  Similarity=0.421  Sum_probs=141.7

Q ss_pred             CCceeEEEEEcCCCCCHHHHHHHHhhCCCCCCCCCcee-eeeeEEEEECC-eEEEEEEEeCCCccccccccccCcCCCcE
Q 036449            3 ASRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVF-DNFSANVVVNG-STVNLGLWDTAGQEDYNRLRPLSYRGADV   80 (197)
Q Consensus         3 ~~~~~~i~v~G~~~~GKstli~~~~~~~~~~~~~~~~~-~~~~~~~~~~~-~~~~~~i~D~~G~~~~~~~~~~~~~~~~~   80 (197)
                      ..+.++|+++|.+|+|||||++++..+.+...+.+|.+ +.....+.+++ ..+.+++||+||++.+...+..++.++|+
T Consensus         3 ~~~~~ki~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~   82 (178)
T 2hxs_A            3 HMRQLKIVVLGDGASGKTSLTTCFAQETFGKQYKQTIGLDFFLRRITLPGNLNVTLQIWDIGGQTIGGKMLDKYIYGAQG   82 (178)
T ss_dssp             CCCEEEEEEECCTTSSHHHHHHHHHGGGTTHHHHHTTTSSEEEEEEEETTTEEEEEEEEECTTCCTTCTTHHHHHTTCSE
T ss_pred             CCceEEEEEECcCCCCHHHHHHHHHhCcCCCCCCCceeEEEEEEEEEeCCCCEEEEEEEECCCCccccchhhHHHhhCCE
Confidence            45789999999999999999999999887766666664 34455666665 67899999999999999999999999999


Q ss_pred             EEEEEeCCCchhHHHHHHHHHHHHhhhC---CCCC-EEEEeeCCcccCCcccccCCCCCCcccHHHHHHHHHHhCCCceE
Q 036449           81 FILAFSLISKASYENVSKKWIPELKHYA---PGVP-IILVGTKLDLRDDKQFFIDHPGAVPISTAQGEELRKLIGAPAYI  156 (197)
Q Consensus        81 ~i~v~d~~~~~s~~~~~~~~~~~i~~~~---~~~~-~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  156 (197)
                      +|+|||++++.+++.+ ..|+..+....   ++.| +++|+||+|+.+.+.          +..+++..+++..+. +++
T Consensus        83 ~i~v~d~~~~~s~~~~-~~~~~~i~~~~~~~~~~~~iilv~nK~Dl~~~~~----------~~~~~~~~~~~~~~~-~~~  150 (178)
T 2hxs_A           83 VLLVYDITNYQSFENL-EDWYTVVKKVSEESETQPLVALVGNKIDLEHMRT----------IKPEKHLRFCQENGF-SSH  150 (178)
T ss_dssp             EEEEEETTCHHHHHTH-HHHHHHHHHHHHHHTCCCEEEEEEECGGGGGGCS----------SCHHHHHHHHHHHTC-EEE
T ss_pred             EEEEEECCCHHHHHHH-HHHHHHHHHHhcccCCCCeEEEEEEccccccccc----------cCHHHHHHHHHHcCC-cEE
Confidence            9999999999999988 68888777643   2455 899999999976443          567788899999998 899


Q ss_pred             EeccCCCCCHHHHHHHHHHHHcCCC
Q 036449          157 ECSSKTQQNVKAVFDAAIRVVLQPP  181 (197)
Q Consensus       157 ~~sa~~~~~i~~l~~~i~~~~~~~~  181 (197)
                      ++||++|.|++++|++|.+.+.+.+
T Consensus       151 ~~Sa~~~~gi~~l~~~l~~~~~~~~  175 (178)
T 2hxs_A          151 FVSAKTGDSVFLCFQKVAAEILGIK  175 (178)
T ss_dssp             EECTTTCTTHHHHHHHHHHHHTTCC
T ss_pred             EEeCCCCCCHHHHHHHHHHHHHhhh
Confidence            9999999999999999999987764

>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8

Probab=100.00  E-value=2.9e-34  Score=203.90  Aligned_cols=164  Identities=24%  Similarity=0.429  Sum_probs=133.7

Q ss_pred             CceeEEEEEcCCCCCHHHHHHHHhhC--CCCCCCCCceeeeeeEEEEECCeEEEEEEEeCCCccc-cccccccCcCCCcE
Q 036449            4 SRFIKCVTVGDGAVGKTCLLISYTSN--TFPTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQED-YNRLRPLSYRGADV   80 (197)
Q Consensus         4 ~~~~~i~v~G~~~~GKstli~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~-~~~~~~~~~~~~~~   80 (197)
                      .+.+||+++|.+|||||||+++|.+.  .+...+.++..+.+...+.+++..+.+.+||++|++. +..+...++..+++
T Consensus        35 ~~~~kVvlvG~~~vGKSSLl~r~~~~~~~~~~~~~~~g~d~~~~~i~~~~~~~~l~~~Dt~g~~~~~~~l~~~~~~~a~~  114 (211)
T 2g3y_A           35 NTYYRVVLIGEQGVGKSTLANIFAGVHDSMDSDCEVLGEDTYERTLMVDGESATIILLDMWENKGENEWLHDHCMQVGDA  114 (211)
T ss_dssp             CCEEEEEEECCTTSSHHHHHHHHHCCCCTTCCC---CCTTEEEEEEEETTEEEEEEEECCTTTTHHHHHHHHCCCCCCSE
T ss_pred             CCceEEEEECCCCCCHHHHHHHHHhCCCCCCCcCCccceeeEEEEEEECCeeeEEEEeecCCCcchhhhHHHHHHhhCCE
Confidence            45699999999999999999999864  3344444444455566777888889999999999876 55566778899999


Q ss_pred             EEEEEeCCCchhHHHHHHHHHHHHhhhC--CCCCEEEEeeCCcccCCcccccCCCCCCcccHHHHHHHHHHhCCCceEEe
Q 036449           81 FILAFSLISKASYENVSKKWIPELKHYA--PGVPIILVGTKLDLRDDKQFFIDHPGAVPISTAQGEELRKLIGAPAYIEC  158 (197)
Q Consensus        81 ~i~v~d~~~~~s~~~~~~~~~~~i~~~~--~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  158 (197)
                      +|+|||++++++|+.+ ..|...+....  ++.|+++|+||+|+.+.+.          +..++++.++...++ +|+++
T Consensus       115 ~ilVydvt~~~sf~~~-~~~~~~l~~~~~~~~~piilVgNK~DL~~~r~----------v~~~e~~~~a~~~~~-~~~e~  182 (211)
T 2g3y_A          115 YLIVYSITDRASFEKA-SELRIQLRRARQTEDIPIILVGNKSDLVRCRE----------VSVSEGRACAVVFDC-KFIET  182 (211)
T ss_dssp             EEEEEETTCHHHHHHH-HHHHHHHHTSGGGTTSCEEEEEECTTCGGGCC----------SCHHHHHHHHHHHTC-EEEEC
T ss_pred             EEEEEECCCHHHHHHH-HHHHHHHHHHhCCCCCcEEEEEEChHHhcCce----------EeHHHHHHHHHHcCC-EEEEE
Confidence            9999999999999998 67777666432  5899999999999976443          566778888888887 89999


Q ss_pred             ccCCCCCHHHHHHHHHHHHcC
Q 036449          159 SSKTQQNVKAVFDAAIRVVLQ  179 (197)
Q Consensus       159 sa~~~~~i~~l~~~i~~~~~~  179 (197)
                      ||++|.|++++|++|++.+..
T Consensus       183 SAk~g~~v~elf~~l~~~i~~  203 (211)
T 2g3y_A          183 SAAVQHNVKELFEGIVRQVRL  203 (211)
T ss_dssp             BTTTTBSHHHHHHHHHHHHHH
T ss_pred             eCCCCCCHHHHHHHHHHHHHH
Confidence            999999999999999998753

>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*

Probab=100.00  E-value=2.6e-34  Score=197.55  Aligned_cols=163  Identities=25%  Similarity=0.385  Sum_probs=128.1

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHhhCCCCCCCCCce-eeeeeEEEEECCeEEEEEEEeCCCcccccc-ccccCcCCCcEEEE
Q 036449            6 FIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTV-FDNFSANVVVNGSTVNLGLWDTAGQEDYNR-LRPLSYRGADVFIL   83 (197)
Q Consensus         6 ~~~i~v~G~~~~GKstli~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~-~~~~~~~~~~~~i~   83 (197)
                      .+||+++|.+|||||||++++.+..+...+.++. .+.....+.+++..+.+.+||+||++.+.. .+..++.++|++++
T Consensus         2 ~~ki~ivG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~d~~i~   81 (169)
T 3q85_A            2 VFKVMLVGESGVGKSTLAGTFGGLQGDHAHEMENSEDTYERRIMVDKEEVTLIVYDIWEQGDAGGWLQDHCLQTGDAFLI   81 (169)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHCC------------CEEEEEEEETTEEEEEEEECCCCC--------CHHHHHCSEEEE
T ss_pred             cEEEEEECCCCCCHHHHHHHHHhccCcccccCCCcCCeeeEEEEECCeEEEEEEEECCCccccchhhhhhhhccCCEEEE
Confidence            5899999999999999999998766654433333 455566677888889999999999998876 67777889999999


Q ss_pred             EEeCCCchhHHHHHHHHHHHHhhhC--CCCCEEEEeeCCcccCCcccccCCCCCCcccHHHHHHHHHHhCCCceEEeccC
Q 036449           84 AFSLISKASYENVSKKWIPELKHYA--PGVPIILVGTKLDLRDDKQFFIDHPGAVPISTAQGEELRKLIGAPAYIECSSK  161 (197)
Q Consensus        84 v~d~~~~~s~~~~~~~~~~~i~~~~--~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~  161 (197)
                      |||++++++++.+ ..|+..+....  ++.|+++|+||+|+.+.+.          +..+++..+++..+. +++++||+
T Consensus        82 v~d~~~~~s~~~~-~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~----------~~~~~~~~~~~~~~~-~~~~~Sa~  149 (169)
T 3q85_A           82 VFSVTDRRSFSKV-PETLLRLRAGRPHHDLPVILVGNKSDLARSRE----------VSLEEGRHLAGTLSC-KHIETSAA  149 (169)
T ss_dssp             EEETTCHHHHHTH-HHHHHHHHHHSTTSCCCEEEEEECTTCGGGCC----------SCHHHHHHHHHHTTC-EEEECBTT
T ss_pred             EEECCChHHHHHH-HHHHHHHHhcccCCCCCEEEEeeCcchhhccc----------CCHHHHHHHHHHcCC-cEEEecCc
Confidence            9999999999998 67777777665  3899999999999976544          678888999999998 99999999


Q ss_pred             CCCCHHHHHHHHHHHHcCC
Q 036449          162 TQQNVKAVFDAAIRVVLQP  180 (197)
Q Consensus       162 ~~~~i~~l~~~i~~~~~~~  180 (197)
                      ++.|++++|+++.+.+..+
T Consensus       150 ~~~~v~~l~~~l~~~i~~~  168 (169)
T 3q85_A          150 LHHNTRELFEGAVRQIRLR  168 (169)
T ss_dssp             TTBSHHHHHHHHHHHHHHT
T ss_pred             cCCCHHHHHHHHHHHHHhc
Confidence            9999999999999987643

>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*

Probab=100.00  E-value=2.9e-34  Score=200.18  Aligned_cols=164  Identities=32%  Similarity=0.562  Sum_probs=145.3

Q ss_pred             CceeEEEEEcCCCCCHHHHHHHHhhCCCCCCCCCceeeeeeEEEEECCeEEEEEEEeCCCccccccccccCcCCCcEEEE
Q 036449            4 SRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFIL   83 (197)
Q Consensus         4 ~~~~~i~v~G~~~~GKstli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~   83 (197)
                      .+.++|+++|.+|+|||||++++....+...+.++....+...+.+++..+.+.+||+||++.+...+..++..+|++++
T Consensus        16 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~   95 (187)
T 2a9k_A           16 LALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGEGFLC   95 (187)
T ss_dssp             -CEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCTTCCEEEEEEEEETTEEEEEEEEECCCTTCCHHHHHHHHHHCSEEEE
T ss_pred             CCceEEEEECCCCCCHHHHHHHHhhCCCCCcCCCccceEEEEEEEECCEEEEEEEEECCCCcccHHHHHHHhccCCEEEE
Confidence            35699999999999999999999999988888888887777777888888899999999999999999999999999999


Q ss_pred             EEeCCCchhHHHHHHHHHHHHhhhC--CCCCEEEEeeCCcccCCcccccCCCCCCcccHHHHHHHHHHhCCCceEEeccC
Q 036449           84 AFSLISKASYENVSKKWIPELKHYA--PGVPIILVGTKLDLRDDKQFFIDHPGAVPISTAQGEELRKLIGAPAYIECSSK  161 (197)
Q Consensus        84 v~d~~~~~s~~~~~~~~~~~i~~~~--~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~  161 (197)
                      |||++++.+++.+ ..|+..+....  .+.|+++|+||+|+.+.+.          +..++++.+++.++. +++++||+
T Consensus        96 v~d~~~~~s~~~~-~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~----------~~~~~~~~~~~~~~~-~~~~~Sa~  163 (187)
T 2a9k_A           96 VFSITEMESFAAT-ADFREQILRVKEDENVPFLLVGNKSDLEDKRQ----------VSVEEAKNRAEQWNV-NYVETSAK  163 (187)
T ss_dssp             EEETTCHHHHHHH-HHHHHHHHHHHCCTTCCEEEEEECGGGGGGCC----------SCHHHHHHHHHHTTC-EEEECCTT
T ss_pred             EEECcCHHHHHHH-HHHHHHHHHhcCCCCCCEEEEEECccccccCc----------cCHHHHHHHHHHcCC-eEEEeCCC
Confidence            9999999999998 67877777655  3899999999999976543          567788899999998 89999999


Q ss_pred             CCCCHHHHHHHHHHHHcC
Q 036449          162 TQQNVKAVFDAAIRVVLQ  179 (197)
Q Consensus       162 ~~~~i~~l~~~i~~~~~~  179 (197)
                      ++.|++++|++|.+.+..
T Consensus       164 ~~~gi~~l~~~l~~~i~~  181 (187)
T 2a9k_A          164 TRANVDKVFFDLMREIRA  181 (187)
T ss_dssp             TCTTHHHHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHH
Confidence            999999999999998854

>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*

Probab=100.00  E-value=9.6e-34  Score=196.08  Aligned_cols=165  Identities=36%  Similarity=0.658  Sum_probs=138.1

Q ss_pred             CceeEEEEEcCCCCCHHHHHHHHhhCCCCCCCCCceeeee-eEEEEECCeEEEEEEEeCCCccccccccccCcCCCcEEE
Q 036449            4 SRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNF-SANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFI   82 (197)
Q Consensus         4 ~~~~~i~v~G~~~~GKstli~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i   82 (197)
                      .+.++|+++|.+|+|||||++++..+.+...+.++.+..+ ...+.+++..+.+.+||+||++.+...+..++..+|+++
T Consensus         5 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i   84 (177)
T 1wms_A            5 SSLFKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTMQIWDTAGQERFRSLRTPFYRGSDCCL   84 (177)
T ss_dssp             EEEEEEEEECCTTSSHHHHHHHHHHSCCCC----CCSEEEEEEEEEETTEEEEEEEEECCCCGGGHHHHGGGGTTCSEEE
T ss_pred             cceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeEEEEEEEECCEEEEEEEEeCCCchhhhhhHHHHHhcCCEEE
Confidence            5679999999999999999999999988877777775444 556677888889999999999999999999999999999


Q ss_pred             EEEeCCCchhHHHHHHHHHHHHhhhC-----CCCCEEEEeeCCcccCCcccccCCCCCCcccHHHHHHHHHHhCCCceEE
Q 036449           83 LAFSLISKASYENVSKKWIPELKHYA-----PGVPIILVGTKLDLRDDKQFFIDHPGAVPISTAQGEELRKLIGAPAYIE  157 (197)
Q Consensus        83 ~v~d~~~~~s~~~~~~~~~~~i~~~~-----~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  157 (197)
                      +|||++++.+++.+ ..|+..+....     ++.|+++|+||+|+.+ +.          +..+++..+++..+..++++
T Consensus        85 ~v~d~~~~~s~~~~-~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~~-~~----------~~~~~~~~~~~~~~~~~~~~  152 (177)
T 1wms_A           85 LTFSVDDSQSFQNL-SNWKKEFIYYADVKEPESFPFVILGNKIDISE-RQ----------VSTEEAQAWCRDNGDYPYFE  152 (177)
T ss_dssp             EEEETTCHHHHHTH-HHHHHHHHHHHTCSCTTTSCEEEEEECTTCSS-CS----------SCHHHHHHHHHHTTCCCEEE
T ss_pred             EEEECcCHHHHHHH-HHHHHHHHHHccccccCCCcEEEEEECCcccc-cc----------cCHHHHHHHHHhcCCceEEE
Confidence            99999999999988 77877776543     5789999999999963 22          56778888888444448999


Q ss_pred             eccCCCCCHHHHHHHHHHHHcCC
Q 036449          158 CSSKTQQNVKAVFDAAIRVVLQP  180 (197)
Q Consensus       158 ~sa~~~~~i~~l~~~i~~~~~~~  180 (197)
                      +||++|.|++++|+++.+.+.+.
T Consensus       153 ~Sa~~~~gi~~l~~~l~~~~~~~  175 (177)
T 1wms_A          153 TSAKDATNVAAAFEEAVRRVLAT  175 (177)
T ss_dssp             CCTTTCTTHHHHHHHHHHHHHTC
T ss_pred             EeCCCCCCHHHHHHHHHHHHHhh
Confidence            99999999999999999988764

>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8

Probab=100.00  E-value=4e-34  Score=200.79  Aligned_cols=165  Identities=28%  Similarity=0.539  Sum_probs=143.1

Q ss_pred             CceeEEEEEcCCCCCHHHHHHHHhhCCCCCCCCCceeeee-eEEEEECCeEEEEEEEeCCCccccccccccCcCCCcEEE
Q 036449            4 SRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNF-SANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFI   82 (197)
Q Consensus         4 ~~~~~i~v~G~~~~GKstli~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i   82 (197)
                      .+.+||+++|.+|+|||||++++..+.+...+.++.+..+ .....+++..+.+.+||+||++.+...+..++..+|++|
T Consensus        21 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii  100 (192)
T 2fg5_A           21 IRELKVCLLGDTGVGKSSIVCRFVQDHFDHNISPTIGASFMTKTVPCGNELHKFLIWDTAGQERFHSLAPMYYRGSAAAV  100 (192)
T ss_dssp             CEEEEEEEEECTTSSHHHHHHHHHHCCCCTTCCCCSSEEEEEEEEECSSSEEEEEEEEECCSGGGGGGTHHHHTTCSEEE
T ss_pred             CCceEEEEECcCCCCHHHHHHHHhcCCCCCCcCCCcceeEEEEEEEeCCEEEEEEEEcCCCchhhHhhhHHhhccCCEEE
Confidence            4679999999999999999999999988777777776544 445566777889999999999999999999999999999


Q ss_pred             EEEeCCCchhHHHHHHHHHHHHhhhC-CCCCEEEEeeCCcccCCcccccCCCCCCcccHHHHHHHHHHhCCCceEEeccC
Q 036449           83 LAFSLISKASYENVSKKWIPELKHYA-PGVPIILVGTKLDLRDDKQFFIDHPGAVPISTAQGEELRKLIGAPAYIECSSK  161 (197)
Q Consensus        83 ~v~d~~~~~s~~~~~~~~~~~i~~~~-~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~  161 (197)
                      +|||++++.+++.+ ..|+..+.... ++.|+++|+||+|+.+.+.          +..++++++++.++. +++++||+
T Consensus       101 lV~d~~~~~s~~~~-~~~~~~i~~~~~~~~piiiv~NK~Dl~~~~~----------v~~~~~~~~~~~~~~-~~~~~Sa~  168 (192)
T 2fg5_A          101 IVYDITKQDSFYTL-KKWVKELKEHGPENIVMAIAGNKCDLSDIRE----------VPLKDAKEYAESIGA-IVVETSAK  168 (192)
T ss_dssp             EEEETTCTHHHHHH-HHHHHHHHHHSCTTCEEEEEEECGGGGGGCC----------SCHHHHHHHHHTTTC-EEEECBTT
T ss_pred             EEEeCCCHHHHHHH-HHHHHHHHHhCCCCCcEEEEEECcccccccc----------cCHHHHHHHHHHcCC-EEEEEeCC
Confidence            99999999999998 78888888766 5899999999999975433          567888899999887 89999999


Q ss_pred             CCCCHHHHHHHHHHHHcCC
Q 036449          162 TQQNVKAVFDAAIRVVLQP  180 (197)
Q Consensus       162 ~~~~i~~l~~~i~~~~~~~  180 (197)
                      ++.|++++|++|.+.+.+.
T Consensus       169 ~~~gi~~l~~~l~~~i~~~  187 (192)
T 2fg5_A          169 NAINIEELFQGISRQIPPL  187 (192)
T ss_dssp             TTBSHHHHHHHHHHTCC--
T ss_pred             CCcCHHHHHHHHHHHHHhh
Confidence            9999999999999987654

>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}

Probab=100.00  E-value=3.7e-34  Score=201.01  Aligned_cols=165  Identities=30%  Similarity=0.531  Sum_probs=143.0

Q ss_pred             CCceeEEEEEcCCCCCHHHHHHHHhhCCCCCCCCCceeeee-eEEEEECCeEEEEEEEeCCCccccccccccCcCCCcEE
Q 036449            3 ASRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNF-SANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVF   81 (197)
Q Consensus         3 ~~~~~~i~v~G~~~~GKstli~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~   81 (197)
                      ..+.++|+++|.+|+|||||++++....+...+.++.+..+ .....+++..+.+.+||+||++.+...+..++.++|++
T Consensus        22 ~~~~~ki~v~G~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~v  101 (193)
T 2oil_A           22 YNFVFKVVLIGESGVGKTNLLSRFTRNEFSHDSRTTIGVEFSTRTVMLGTAAVKAQIWDTAGLERYRAITSAYYRGAVGA  101 (193)
T ss_dssp             CSEEEEEEEESSTTSSHHHHHHHHHHSCCCSSCCCCSSEEEEEEEEEETTEEEEEEEEEESCCCTTCTTHHHHHTTCCEE
T ss_pred             cCcceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCCchhhhhhhHHHhccCCEE
Confidence            34679999999999999999999999988877777765433 45566778889999999999999999999999999999


Q ss_pred             EEEEeCCCchhHHHHHHHHHHHHhhhC-CCCCEEEEeeCCcccCCcccccCCCCCCcccHHHHHHHHHHhCCCceEEecc
Q 036449           82 ILAFSLISKASYENVSKKWIPELKHYA-PGVPIILVGTKLDLRDDKQFFIDHPGAVPISTAQGEELRKLIGAPAYIECSS  160 (197)
Q Consensus        82 i~v~d~~~~~s~~~~~~~~~~~i~~~~-~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa  160 (197)
                      |+|||++++.+++.+ ..|+..+.... ++.|+++|+||+|+...+.          +..++++.++...+. +++++||
T Consensus       102 i~v~D~~~~~s~~~~-~~~l~~i~~~~~~~~piilv~nK~Dl~~~~~----------~~~~~~~~~~~~~~~-~~~~~Sa  169 (193)
T 2oil_A          102 LLVFDLTKHQTYAVV-ERWLKELYDHAEATIVVMLVGNKSDLSQARE----------VPTEEARMFAENNGL-LFLETSA  169 (193)
T ss_dssp             EEEEETTCHHHHHTH-HHHHHHHHTTSCTTCEEEEEEECGGGGGGCC----------SCHHHHHHHHHHTTC-EEEEECT
T ss_pred             EEEEECCCHHHHHHH-HHHHHHHHHhcCCCCeEEEEEECCCcccccc----------cCHHHHHHHHHHcCC-EEEEEeC
Confidence            999999999999988 67888877655 6899999999999976443          567788889988888 8999999


Q ss_pred             CCCCCHHHHHHHHHHHHcC
Q 036449          161 KTQQNVKAVFDAAIRVVLQ  179 (197)
Q Consensus       161 ~~~~~i~~l~~~i~~~~~~  179 (197)
                      +++.|++++|++|.+.+.+
T Consensus       170 ~~~~gi~~l~~~l~~~i~~  188 (193)
T 2oil_A          170 LDSTNVELAFETVLKEIFA  188 (193)
T ss_dssp             TTCTTHHHHHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHHHH
Confidence            9999999999999998864

>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A

Probab=100.00  E-value=4.3e-34  Score=196.48  Aligned_cols=163  Identities=32%  Similarity=0.648  Sum_probs=136.4

Q ss_pred             ceeEEEEEcCCCCCHHHHHHHHhhCCCCCCCCCceeeee-eEEEEECCeEEEEEEEeCCCccccccccccCcCCCcEEEE
Q 036449            5 RFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNF-SANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFIL   83 (197)
Q Consensus         5 ~~~~i~v~G~~~~GKstli~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~   83 (197)
                      ..++|+++|.+|+|||||++++.+..+...+.++.+..+ ...+.+++..+.+.+||+||++.+...+..++.++|++++
T Consensus         2 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~   81 (170)
T 1g16_A            2 SIMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQIWDTAGQERFRTITTAYYRGAMGIIL   81 (170)
T ss_dssp             CEEEEEEEESTTSSHHHHHHHHHHCCCCC-------CCEEEEEEESSSCEEEEEEECCTTGGGTSCCCHHHHTTEEEEEE
T ss_pred             CceEEEEECcCCCCHHHHHHHHHhCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCCChhhhhhHHHHhccCCEEEE
Confidence            468999999999999999999999988777777775444 4556667778899999999999999999999999999999


Q ss_pred             EEeCCCchhHHHHHHHHHHHHhhhC-CCCCEEEEeeCCcccCCcccccCCCCCCcccHHHHHHHHHHhCCCceEEeccCC
Q 036449           84 AFSLISKASYENVSKKWIPELKHYA-PGVPIILVGTKLDLRDDKQFFIDHPGAVPISTAQGEELRKLIGAPAYIECSSKT  162 (197)
Q Consensus        84 v~d~~~~~s~~~~~~~~~~~i~~~~-~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~  162 (197)
                      |||++++.+++.+ ..|+..+.... ++.|+++|+||+|+... .          +..+++..+++..+. +++++||++
T Consensus        82 v~d~~~~~s~~~~-~~~~~~i~~~~~~~~piilv~nK~Dl~~~-~----------~~~~~~~~~~~~~~~-~~~~~Sa~~  148 (170)
T 1g16_A           82 VYDITDERTFTNI-KQWFKTVNEHANDEAQLLLVGNKSDMETR-V----------VTADQGEALAKELGI-PFIESSAKN  148 (170)
T ss_dssp             EEETTCHHHHHTH-HHHHHHHHHHSCTTCEEEEEEECTTCTTC-C----------SCHHHHHHHHHHHTC-CEEECBTTT
T ss_pred             EEECCCHHHHHHH-HHHHHHHHHhcCCCCcEEEEEECccCCcC-c----------cCHHHHHHHHHHcCC-eEEEEECCC
Confidence            9999999999988 78888887766 68999999999999432 2          566788889999998 899999999


Q ss_pred             CCCHHHHHHHHHHHHcCC
Q 036449          163 QQNVKAVFDAAIRVVLQP  180 (197)
Q Consensus       163 ~~~i~~l~~~i~~~~~~~  180 (197)
                      +.|++++|++|.+.+.++
T Consensus       149 ~~gv~~l~~~l~~~~~~~  166 (170)
T 1g16_A          149 DDNVNEIFFTLAKLIQEK  166 (170)
T ss_dssp             TBSHHHHHHHHHHHHHHT
T ss_pred             CCCHHHHHHHHHHHHHHH
Confidence            999999999999988654

>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}

Probab=100.00  E-value=2.6e-34  Score=202.79  Aligned_cols=172  Identities=32%  Similarity=0.511  Sum_probs=135.0

Q ss_pred             CCCceeEEEEEcCCCCCHHHHHHHHhhCCCCCCCCCceeeee-eEEEEECCeEEEEEEEeCCCccccccccccCcCCCcE
Q 036449            2 SASRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNF-SANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGADV   80 (197)
Q Consensus         2 ~~~~~~~i~v~G~~~~GKstli~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~   80 (197)
                      ...+.++|+++|.+|+|||||++++..+.+...+.++.+..+ .....+++..+.+.+||+||++.+...+..++..+|+
T Consensus        24 ~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~  103 (199)
T 2p5s_A           24 SSQKAYKIVLAGDAAVGKSSFLMRLCKNEFRENISATLGVDFQMKTLIVDGERTVLQLWDTAGQERFRSIAKSYFRKADG  103 (199)
T ss_dssp             ----CEEEEEESSTTSSHHHHHHHHHHCCCC----------CEEEEEEETTEEEEEEEEECTTCTTCHHHHHHHHHHCSE
T ss_pred             CcCCCeEEEEECcCCCCHHHHHHHHHhCCCCccCCCCccceeEEEEEEECCEEEEEEEEECCCCcchhhhHHHHHhhCCE
Confidence            345679999999999999999999999988777777775444 4567778888999999999999999988889999999


Q ss_pred             EEEEEeCCCchhHHHHHHHHHHHHhhhC-CCCCEEEEeeCCcccCCcccccCCCCCCcccHHHHHHHHHHhCCCceEEec
Q 036449           81 FILAFSLISKASYENVSKKWIPELKHYA-PGVPIILVGTKLDLRDDKQFFIDHPGAVPISTAQGEELRKLIGAPAYIECS  159 (197)
Q Consensus        81 ~i~v~d~~~~~s~~~~~~~~~~~i~~~~-~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s  159 (197)
                      +|+|||++++.+++.+ ..|+..+.... ++.|+++|+||+|+......    ...+.+..+++..++...+. +++++|
T Consensus       104 iilv~d~~~~~s~~~~-~~~~~~i~~~~~~~~piilv~NK~Dl~~~~~~----~~~~~v~~~~~~~~~~~~~~-~~~~~S  177 (199)
T 2p5s_A          104 VLLLYDVTCEKSFLNI-REWVDMIEDAAHETVPIMLVGNKADIRDTAAT----EGQKCVPGHFGEKLAMTYGA-LFCETS  177 (199)
T ss_dssp             EEEEEETTCHHHHHTH-HHHHHHHHHHC---CCEEEEEECGGGHHHHHH----TTCCCCCHHHHHHHHHHHTC-EEEECC
T ss_pred             EEEEEECCChHHHHHH-HHHHHHHHHhcCCCCCEEEEEECccccccccc----ccccccCHHHHHHHHHHcCC-eEEEee
Confidence            9999999999999998 68888887765 58999999999999632100    01223667888899999998 899999


Q ss_pred             cCCCCCHHHHHHHHHHHHcC
Q 036449          160 SKTQQNVKAVFDAAIRVVLQ  179 (197)
Q Consensus       160 a~~~~~i~~l~~~i~~~~~~  179 (197)
                      |++|.|++++|++|++.+.+
T Consensus       178 A~~g~gv~el~~~l~~~i~~  197 (199)
T 2p5s_A          178 AKDGSNIVEAVLHLAREVKK  197 (199)
T ss_dssp             TTTCTTHHHHHHHHHHHHTC
T ss_pred             CCCCCCHHHHHHHHHHHHHh
Confidence            99999999999999998864

>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8

Probab=100.00  E-value=2.4e-34  Score=197.98  Aligned_cols=164  Identities=27%  Similarity=0.500  Sum_probs=141.0

Q ss_pred             ceeEEEEEcCCCCCHHHHHHHHhhCCCCCCCCCceeeeeeEEEEECCeEEEEEEEeCCCccccccccccCcCCCcEEEEE
Q 036449            5 RFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILA   84 (197)
Q Consensus         5 ~~~~i~v~G~~~~GKstli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v   84 (197)
                      +.++|+++|.+|+|||||++++.++.+...+.++.+..+......++..+.+.+||+||++.+...+..++..+|++++|
T Consensus         2 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~~~~i~v   81 (172)
T 2erx_A            2 NDYRVAVFGAGGVGKSSLVLRFVKGTFRESYIPTVEDTYRQVISCDKSICTLQITDTTGSHQFPAMQRLSISKGHAFILV   81 (172)
T ss_dssp             CEEEEEEECCTTSSHHHHHHHHHTCCCCSSCCCCSCEEEEEEEEETTEEEEEEEEECCSCSSCHHHHHHHHHHCSEEEEE
T ss_pred             CceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCCccccEEEEEEECCEEEEEEEEECCCchhhHHHHHHhcccCCEEEEE
Confidence            56899999999999999999999998887777887767666677788888999999999999998888889999999999


Q ss_pred             EeCCCchhHHHHHHHHHHHHhhhC---CCCCEEEEeeCCcccCCcccccCCCCCCcccHHHHHHHHHHhCCCceEEeccC
Q 036449           85 FSLISKASYENVSKKWIPELKHYA---PGVPIILVGTKLDLRDDKQFFIDHPGAVPISTAQGEELRKLIGAPAYIECSSK  161 (197)
Q Consensus        85 ~d~~~~~s~~~~~~~~~~~i~~~~---~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~  161 (197)
                      ||++++.+++.+ ..|+..+....   ++.|+++|+||+|+.+.+.          +..+++..++...+. +++++||+
T Consensus        82 ~d~~~~~~~~~~-~~~~~~i~~~~~~~~~~pii~v~nK~Dl~~~~~----------v~~~~~~~~~~~~~~-~~~~~Sa~  149 (172)
T 2erx_A           82 YSITSRQSLEEL-KPIYEQICEIKGDVESIPIMLVGNKCDESPSRE----------VQSSEAEALARTWKC-AFMETSAK  149 (172)
T ss_dssp             EETTCHHHHHTT-HHHHHHHHHHHC---CCCEEEEEECGGGGGGCC----------SCHHHHHHHHHHHTC-EEEECBTT
T ss_pred             EECcCHHHHHHH-HHHHHHHHHHhCCCCCCCEEEEEEccccccccc----------cCHHHHHHHHHHhCC-eEEEecCC
Confidence            999999999887 56666665532   5899999999999976543          566777888888887 89999999


Q ss_pred             CCCCHHHHHHHHHHHHcCC
Q 036449          162 TQQNVKAVFDAAIRVVLQP  180 (197)
Q Consensus       162 ~~~~i~~l~~~i~~~~~~~  180 (197)
                      ++.|++++|++|.+.+..+
T Consensus       150 ~~~gi~~l~~~l~~~~~~~  168 (172)
T 2erx_A          150 LNHNVKELFQELLNLEKRR  168 (172)
T ss_dssp             TTBSHHHHHHHHHHTCCSS
T ss_pred             CCcCHHHHHHHHHHHHhhh
Confidence            9999999999999876543

>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*

Probab=100.00  E-value=4.5e-34  Score=197.94  Aligned_cols=164  Identities=34%  Similarity=0.557  Sum_probs=141.8

Q ss_pred             CceeEEEEEcCCCCCHHHHHHHHhhCCCCCCCCCcee-eeeeEEEEECCeEEEEEEEeCCCccccccccccCcCCCcEEE
Q 036449            4 SRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVF-DNFSANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFI   82 (197)
Q Consensus         4 ~~~~~i~v~G~~~~GKstli~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i   82 (197)
                      .+.++|+++|.+|+|||||++++..+.+...+.++.+ +.....+.+++..+.+.+||+||++.+...+..++.++|+++
T Consensus        12 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~~i   91 (179)
T 2y8e_A           12 LRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAV   91 (179)
T ss_dssp             CEEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGSHHHHHTCSEEE
T ss_pred             CcceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeEEEEEEEEECCeEEEEEEEECCCcHHHHHHHHHHhcCCCEEE
Confidence            3569999999999999999999999988877777775 444566778888889999999999999999999999999999


Q ss_pred             EEEeCCCchhHHHHHHHHHHHHhhhC-CCCCEEEEeeCCcccCCcccccCCCCCCcccHHHHHHHHHHhCCCceEEeccC
Q 036449           83 LAFSLISKASYENVSKKWIPELKHYA-PGVPIILVGTKLDLRDDKQFFIDHPGAVPISTAQGEELRKLIGAPAYIECSSK  161 (197)
Q Consensus        83 ~v~d~~~~~s~~~~~~~~~~~i~~~~-~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~  161 (197)
                      +|||++++.+++.+ ..|+..+.... ++.|+++|+||+|+.+.+.          +..+++..++...+. +++++||+
T Consensus        92 ~v~d~~~~~s~~~~-~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~----------~~~~~~~~~~~~~~~-~~~~~Sa~  159 (179)
T 2y8e_A           92 VVYDITNTNSFHQT-SKWIDDVRTERGSDVIIMLVGNKTDLSDKRQ----------VSTEEGERKAKELNV-MFIETSAK  159 (179)
T ss_dssp             EEEETTCHHHHHTH-HHHHHHHHHHHTTSSEEEEEEECGGGGGGCC----------SCHHHHHHHHHHHTC-EEEEEBTT
T ss_pred             EEEECCCHHHHHHH-HHHHHHHHHhcCCCCcEEEEEECCcccccCc----------CCHHHHHHHHHHcCC-eEEEEeCC
Confidence            99999999999988 67877776554 5899999999999976543          567788888888887 89999999


Q ss_pred             CCCCHHHHHHHHHHHHcC
Q 036449          162 TQQNVKAVFDAAIRVVLQ  179 (197)
Q Consensus       162 ~~~~i~~l~~~i~~~~~~  179 (197)
                      ++.|++++|++|.+.+..
T Consensus       160 ~~~~i~~l~~~l~~~~~~  177 (179)
T 2y8e_A          160 AGYNVKQLFRRVAAALPG  177 (179)
T ss_dssp             TTBSHHHHHHHHHHTCC-
T ss_pred             CCCCHHHHHHHHHHHHhh
Confidence            999999999999987654

>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*

Probab=100.00  E-value=1.3e-33  Score=197.79  Aligned_cols=164  Identities=35%  Similarity=0.565  Sum_probs=134.7

Q ss_pred             CceeEEEEEcCCCCCHHHHHHHHhhCCCCCCCCCceeeeeeEEEEECCeEEEEEEEeCCCccccccccccCcCCCcEEEE
Q 036449            4 SRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFIL   83 (197)
Q Consensus         4 ~~~~~i~v~G~~~~GKstli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~   83 (197)
                      .+.++|+++|.+|||||||++++..+.+...+.++....+...+.+++..+.+.+||+||++.+...+..++..+|++++
T Consensus        19 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~   98 (190)
T 3con_A           19 MTEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLC   98 (190)
T ss_dssp             CEEEEEEEECSTTSSHHHHHHHHHHSSCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCC-----------CTTCSEEEE
T ss_pred             cceeEEEEECcCCCCHHHHHHHHHcCCCccccCCccceEEEEEEEECCEEEEEEEEECCChHHHHHHHHHhhCcCCEEEE
Confidence            35699999999999999999999999888888888877777777888888999999999999999999999999999999


Q ss_pred             EEeCCCchhHHHHHHHHHHHHhhhC--CCCCEEEEeeCCcccCCcccccCCCCCCcccHHHHHHHHHHhCCCceEEeccC
Q 036449           84 AFSLISKASYENVSKKWIPELKHYA--PGVPIILVGTKLDLRDDKQFFIDHPGAVPISTAQGEELRKLIGAPAYIECSSK  161 (197)
Q Consensus        84 v~d~~~~~s~~~~~~~~~~~i~~~~--~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~  161 (197)
                      |||++++.+++.+ ..|+..+....  ++.|+++|+||+|+....           ...++++++++.++. +++++||+
T Consensus        99 v~d~~~~~s~~~~-~~~~~~i~~~~~~~~~p~ilv~nK~Dl~~~~-----------~~~~~~~~~~~~~~~-~~~~~Sa~  165 (190)
T 3con_A           99 VFAINNSKSFADI-NLYREQIKRVKDSDDVPMVLVGNKCDLPTRT-----------VDTKQAHELAKSYGI-PFIETSAK  165 (190)
T ss_dssp             EEETTCHHHHHHH-HHHHHHHHHHHTCSCCCEEEEEECTTCSCCC-----------SCHHHHHHHHHHHTC-CEEECCTT
T ss_pred             EEECcCHHHHHHH-HHHHHHHHHHhCCCCCeEEEEEECCcCCccc-----------CCHHHHHHHHHHcCC-eEEEEeCC
Confidence            9999999999988 78887777654  479999999999996522           567788899999998 89999999


Q ss_pred             CCCCHHHHHHHHHHHHcCC
Q 036449          162 TQQNVKAVFDAAIRVVLQP  180 (197)
Q Consensus       162 ~~~~i~~l~~~i~~~~~~~  180 (197)
                      ++.|++++|++|.+.+.+.
T Consensus       166 ~~~gi~~l~~~l~~~~~~~  184 (190)
T 3con_A          166 TRQGVEDAFYTLVREIRQY  184 (190)
T ss_dssp             TCTTHHHHHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHHH
Confidence            9999999999999988643

>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8

Probab=100.00  E-value=1.4e-33  Score=199.62  Aligned_cols=165  Identities=32%  Similarity=0.638  Sum_probs=144.4

Q ss_pred             CceeEEEEEcCCCCCHHHHHHHHhhCCCCCCCCCceeeee-eEEEEECCeEEEEEEEeCCCccccccccccCcCCCcEEE
Q 036449            4 SRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNF-SANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFI   82 (197)
Q Consensus         4 ~~~~~i~v~G~~~~GKstli~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i   82 (197)
                      ...+||+++|.+|||||||++++....+...+.++.+..+ ...+..++..+.+.+||+||++.+...+..++.++|++|
T Consensus         6 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii   85 (203)
T 1zbd_A            6 DYMFKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDTAGLERYRTITTAYYRGAMGFI   85 (203)
T ss_dssp             SEEEEEEEECSTTSSHHHHHHHHHTCCCCSCCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHTTGGGCSEEE
T ss_pred             ceeeEEEEECCCCCCHHHHHHHHhcCCCCCCcCCccceeEEEEEEEECCeEEEEEEEECCCchhhcchHHHhhcCCCEEE
Confidence            4679999999999999999999999998877777775444 455667888899999999999999999999999999999


Q ss_pred             EEEeCCCchhHHHHHHHHHHHHhhhC-CCCCEEEEeeCCcccCCcccccCCCCCCcccHHHHHHHHHHhCCCceEEeccC
Q 036449           83 LAFSLISKASYENVSKKWIPELKHYA-PGVPIILVGTKLDLRDDKQFFIDHPGAVPISTAQGEELRKLIGAPAYIECSSK  161 (197)
Q Consensus        83 ~v~d~~~~~s~~~~~~~~~~~i~~~~-~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~  161 (197)
                      +|||++++.+++.+ ..|+..+.... ++.|+++|+||+|+.+.+.          +..+++..+++.++. +++++||+
T Consensus        86 ~v~d~~~~~s~~~~-~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~----------~~~~~~~~~~~~~~~-~~~~~Sa~  153 (203)
T 1zbd_A           86 LMYDITNEESFNAV-QDWSTQIKTYSWDNAQVLLVGNKCDMEDERV----------VSSERGRQLADHLGF-EFFEASAK  153 (203)
T ss_dssp             EEEETTCHHHHHHH-HHHHHHHHHHSCSSCEEEEEEECTTCTTSCC----------SCHHHHHHHHHHHTC-EEEECBTT
T ss_pred             EEEECcCHHHHHHH-HHHHHHHHHhcCCCCCEEEEEECcccCcccc----------cCHHHHHHHHHHCCC-eEEEEECC
Confidence            99999999999988 67888887766 6899999999999976543          667888899999998 89999999


Q ss_pred             CCCCHHHHHHHHHHHHcCC
Q 036449          162 TQQNVKAVFDAAIRVVLQP  180 (197)
Q Consensus       162 ~~~~i~~l~~~i~~~~~~~  180 (197)
                      +|.|++++|++|.+.+.+.
T Consensus       154 ~~~gi~~l~~~l~~~i~~~  172 (203)
T 1zbd_A          154 DNINVKQTFERLVDVICEK  172 (203)
T ss_dssp             TTBSSHHHHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHHH
Confidence            9999999999999887654

>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*

Probab=100.00  E-value=5.3e-34  Score=200.04  Aligned_cols=165  Identities=32%  Similarity=0.566  Sum_probs=142.2

Q ss_pred             CceeEEEEEcCCCCCHHHHHHHHhhCCCCCCCCCceeeeee--EEEEECCe---------EEEEEEEeCCCccccccccc
Q 036449            4 SRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFS--ANVVVNGS---------TVNLGLWDTAGQEDYNRLRP   72 (197)
Q Consensus         4 ~~~~~i~v~G~~~~GKstli~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~---------~~~~~i~D~~G~~~~~~~~~   72 (197)
                      .+.++|+++|.+|+|||||++++..+.+...+.++.+..+.  .....++.         .+.+.+||+||++.+...+.
T Consensus         9 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~   88 (195)
T 3bc1_A            9 DYLIKFLALGDSGVGKTSVLYQYTDGKFNSKFITTVGIDFREKRVVYRANGPDGAVGRGQRIHLQLWDTAGLERFRSLTT   88 (195)
T ss_dssp             SEEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEEEEEEECTTSCCCSSCCCEEEEEEEEEECCSGGGHHHHH
T ss_pred             ceeEEEEEECCCCCCHHHHHHHHhcCCCCcCcccccceeeeeEEEEEecCCcccccccCcEEEEEEEeCCCcHHHHHHHH
Confidence            45799999999999999999999999888777777765443  34445544         78899999999999999999


Q ss_pred             cCcCCCcEEEEEEeCCCchhHHHHHHHHHHHHhhhC--CCCCEEEEeeCCcccCCcccccCCCCCCcccHHHHHHHHHHh
Q 036449           73 LSYRGADVFILAFSLISKASYENVSKKWIPELKHYA--PGVPIILVGTKLDLRDDKQFFIDHPGAVPISTAQGEELRKLI  150 (197)
Q Consensus        73 ~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~i~~~~--~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  150 (197)
                      .++.++|++|+|||++++.+++.+ ..|+..+....  ++.|+++|+||+|+.+.+.          +..++++.++...
T Consensus        89 ~~~~~~d~~i~v~d~~~~~s~~~~-~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~----------~~~~~~~~~~~~~  157 (195)
T 3bc1_A           89 AFFRDAMGFLLLFDLTNEQSFLNV-RNWISQLQMHAYSENPDIVLCGNKSDLEDQRA----------VKEEEARELAEKY  157 (195)
T ss_dssp             HTTTTCSEEEEEEETTCHHHHHTH-HHHHHHHHHHSSSSSCCEEEEEECTTCGGGCC----------SCHHHHHHHHHHH
T ss_pred             HHHcCCCEEEEEEECCCHHHHHHH-HHHHHHHHHhcCCCCCCEEEEEECcccccccc----------cCHHHHHHHHHHc
Confidence            999999999999999999999998 68888887765  5899999999999976443          5677888999999


Q ss_pred             CCCceEEeccCCCCCHHHHHHHHHHHHcCC
Q 036449          151 GAPAYIECSSKTQQNVKAVFDAAIRVVLQP  180 (197)
Q Consensus       151 ~~~~~~~~sa~~~~~i~~l~~~i~~~~~~~  180 (197)
                      +. +++++||+++.|++++|++|.+.+.+.
T Consensus       158 ~~-~~~~~Sa~~~~~v~~l~~~l~~~~~~~  186 (195)
T 3bc1_A          158 GI-PYFETSAANGTNISHAIEMLLDLIMKR  186 (195)
T ss_dssp             TC-CEEECCTTTCTTHHHHHHHHHHHHHHH
T ss_pred             CC-CEEEEECCCCCCHHHHHHHHHHHHHHH
Confidence            98 899999999999999999999988653

>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}

Probab=100.00  E-value=2.8e-34  Score=202.09  Aligned_cols=166  Identities=25%  Similarity=0.411  Sum_probs=136.7

Q ss_pred             CceeEEEEEcCCCCCHHHHHHHHhhCCCCCCCCCc-eeeeeeEEEEECCeEEEEEEEeCCCcccccc-ccccCcCCCcEE
Q 036449            4 SRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPT-VFDNFSANVVVNGSTVNLGLWDTAGQEDYNR-LRPLSYRGADVF   81 (197)
Q Consensus         4 ~~~~~i~v~G~~~~GKstli~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~-~~~~~~~~~~~~   81 (197)
                      ...++|+++|.+|||||||+++|.+......+.++ ..+.+...+.+++..+.+.+||++|++.+.. ++..++..+|++
T Consensus        21 ~~~~ki~vvG~~~vGKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~~d~~  100 (195)
T 3cbq_A           21 DGIFKVMLVGESGVGKSTLAGTFGGLQGDSAHEPENPEDTYERRIMVDKEEVTLVVYDIWEQGDAGGWLRDHCLQTGDAF  100 (195)
T ss_dssp             -CEEEEEEECSTTSSHHHHHHHTCCEECCGGGTTTSCTTEEEEEEEETTEEEEEEEECCCCCSGGGHHHHHHHHHHCSEE
T ss_pred             CcEEEEEEECCCCCCHHHHHHHHHhccCCccCCCCcccceEEEEEEECCEEEEEEEEecCCCccchhhhHHHhhccCCEE
Confidence            46699999999999999999999754332222233 3445556677888889999999999988765 677788899999


Q ss_pred             EEEEeCCCchhHHHHHHHHHHHHhhhC--CCCCEEEEeeCCcccCCcccccCCCCCCcccHHHHHHHHHHhCCCceEEec
Q 036449           82 ILAFSLISKASYENVSKKWIPELKHYA--PGVPIILVGTKLDLRDDKQFFIDHPGAVPISTAQGEELRKLIGAPAYIECS  159 (197)
Q Consensus        82 i~v~d~~~~~s~~~~~~~~~~~i~~~~--~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s  159 (197)
                      |+|||++++.+++.+ ..|+..+....  ++.|+++|+||+|+.+.+.          +..++++.+++..+. +++++|
T Consensus       101 ilv~d~~~~~s~~~~-~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~----------v~~~~~~~~a~~~~~-~~~e~S  168 (195)
T 3cbq_A          101 LIVFSVTDRRSFSKV-PETLLRLRAGRPHHDLPVILVGNKSDLARSRE----------VSLEEGRHLAGTLSC-KHIETS  168 (195)
T ss_dssp             EEEEETTCHHHHHTH-HHHHHHHHHHSTTSCCCEEEEEECTTCTTTCC----------SCHHHHHHHHHHTTC-EEEEEB
T ss_pred             EEEEECCCHHHHHHH-HHHHHHHHHhcCCCCCCEEEEeechhccccCC----------cCHHHHHHHHHHhCC-EEEEEc
Confidence            999999999999998 67888877655  4899999999999976543          667888899999887 899999


Q ss_pred             cCCCCCHHHHHHHHHHHHcCCC
Q 036449          160 SKTQQNVKAVFDAAIRVVLQPP  181 (197)
Q Consensus       160 a~~~~~i~~l~~~i~~~~~~~~  181 (197)
                      |+++.|++++|++|++.+...+
T Consensus       169 a~~~~~v~~lf~~l~~~i~~~~  190 (195)
T 3cbq_A          169 AALHHNTRELFEGAVRQIRLRR  190 (195)
T ss_dssp             TTTTBSHHHHHHHHHHHHHTTC
T ss_pred             CCCCCCHHHHHHHHHHHHHHhc
Confidence            9999999999999999886543

>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}

Probab=100.00  E-value=2.6e-34  Score=201.75  Aligned_cols=165  Identities=32%  Similarity=0.560  Sum_probs=135.4

Q ss_pred             CceeEEEEEcCCCCCHHHHHHHHhhCCCCCCCCCcee-eeeeEEEEECCeEEEEEEEeCCCccccccccccCcCCCcEEE
Q 036449            4 SRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVF-DNFSANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFI   82 (197)
Q Consensus         4 ~~~~~i~v~G~~~~GKstli~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i   82 (197)
                      ...++|+++|.+|+|||||++++..+.+...+.++.+ +.....+.+++..+.+.+||+||++.+...+..++.++|++|
T Consensus        24 ~~~~ki~vvG~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii  103 (192)
T 2il1_A           24 DFKLQVIIIGSRGVGKTSLMERFTDDTFCEACKSTVGVDFKIKTVELRGKKIRLQIWDTAGQERFNSITSAYYRSAKGII  103 (192)
T ss_dssp             SEEEEEEEECSTTSSHHHHHHHHCC--------CCTTEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHHHHHHCSEEE
T ss_pred             CCceEEEEECCCCCCHHHHHHHHhcCCCCcCCCCccceeEEEEEEEECCeEEEEEEEeCCCcHHHHHHHHHHhcCCCEEE
Confidence            4569999999999999999999999888777667764 344556677888899999999999999998889999999999


Q ss_pred             EEEeCCCchhHHHHHHHHHHHHhhhC-CCCCEEEEeeCCcccCCcccccCCCCCCcccHHHHHHHHHHhCCCceEEeccC
Q 036449           83 LAFSLISKASYENVSKKWIPELKHYA-PGVPIILVGTKLDLRDDKQFFIDHPGAVPISTAQGEELRKLIGAPAYIECSSK  161 (197)
Q Consensus        83 ~v~d~~~~~s~~~~~~~~~~~i~~~~-~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~  161 (197)
                      +|||++++.+++.+ ..|+..+.... .+.|+++|+||+|+.+.+.          +..++++.+++..+..+++++||+
T Consensus       104 lV~D~~~~~s~~~~-~~~~~~i~~~~~~~~piilV~NK~Dl~~~~~----------v~~~~~~~~~~~~~~~~~~~~SA~  172 (192)
T 2il1_A          104 LVYDITKKETFDDL-PKWMKMIDKYASEDAELLLVGNKLDCETDRE----------ITRQQGEKFAQQITGMRFCEASAK  172 (192)
T ss_dssp             EEEETTCHHHHHTH-HHHHHHHHHHSCTTCEEEEEEECGGGGGGCC----------SCHHHHHHHHHTSTTCEEEECBTT
T ss_pred             EEEECcCHHHHHHH-HHHHHHHHHhcCCCCcEEEEEECcccccccc----------cCHHHHHHHHHhcCCCeEEEEeCC
Confidence            99999999999998 78888888766 5899999999999976543          567778888887533489999999


Q ss_pred             CCCCHHHHHHHHHHHHcC
Q 036449          162 TQQNVKAVFDAAIRVVLQ  179 (197)
Q Consensus       162 ~~~~i~~l~~~i~~~~~~  179 (197)
                      +|.|++++|++|.+.+.+
T Consensus       173 ~g~gi~~l~~~l~~~i~~  190 (192)
T 2il1_A          173 DNFNVDEIFLKLVDDILK  190 (192)
T ss_dssp             TTBSHHHHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHH
Confidence            999999999999988753

>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*

Probab=100.00  E-value=9.3e-34  Score=200.94  Aligned_cols=166  Identities=30%  Similarity=0.551  Sum_probs=138.8

Q ss_pred             CceeEEEEEcCCCCCHHHHHHHHhhCCCCCCCCCcee-eeeeEEEEECCeEEEEEEEeCCCccccccccccCcCCCcEEE
Q 036449            4 SRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVF-DNFSANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFI   82 (197)
Q Consensus         4 ~~~~~i~v~G~~~~GKstli~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i   82 (197)
                      .+.++|+++|.+|+|||||++++.+..+...+.++.+ +.....+.+++..+.+.+||+||++.+...+..++.++|++|
T Consensus         6 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i   85 (207)
T 1vg8_A            6 KVLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQERFQSLGVAFYRGADCCV   85 (207)
T ss_dssp             -CEEEEEEECCTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEESSSCEEEEEEEEECSSGGGSCSCCGGGTTCSEEE
T ss_pred             CcceEEEEECcCCCCHHHHHHHHHcCCCCCCCCCcccceEEEEEEEECCEEEEEEEEeCCCcHHHHHhHHHHHhCCcEEE
Confidence            4679999999999999999999999988877777774 344555667777889999999999999999999999999999


Q ss_pred             EEEeCCCchhHHHHHHHHHHHHhhhC-----CCCCEEEEeeCCcccCCcccccCCCCCCcccHHHHHHHHHHhCCCceEE
Q 036449           83 LAFSLISKASYENVSKKWIPELKHYA-----PGVPIILVGTKLDLRDDKQFFIDHPGAVPISTAQGEELRKLIGAPAYIE  157 (197)
Q Consensus        83 ~v~d~~~~~s~~~~~~~~~~~i~~~~-----~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  157 (197)
                      +|||++++.+++.+ ..|+..+....     ++.|+++|+||+|+.+..           +..+++..++......++++
T Consensus        86 ~v~d~~~~~s~~~~-~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~-----------~~~~~~~~~~~~~~~~~~~~  153 (207)
T 1vg8_A           86 LVFDVTAPNTFKTL-DSWRDEFLIQASPRDPENFPFVVLGNKIDLENRQ-----------VATKRAQAWCYSKNNIPYFE  153 (207)
T ss_dssp             EEEETTCHHHHHTH-HHHHHHHHHHHCCSSGGGSCEEEEEECTTSSCCC-----------SCHHHHHHHHHHTTSCCEEE
T ss_pred             EEEECCCHHHHHHH-HHHHHHHHHhcccccCCCCcEEEEEECCCCcccc-----------cCHHHHHHHHHhcCCceEEE
Confidence            99999999999988 77777766543     478999999999997322           45677778877443348999


Q ss_pred             eccCCCCCHHHHHHHHHHHHcCCC
Q 036449          158 CSSKTQQNVKAVFDAAIRVVLQPP  181 (197)
Q Consensus       158 ~sa~~~~~i~~l~~~i~~~~~~~~  181 (197)
                      +||++|.|++++|++|.+.+....
T Consensus       154 ~Sa~~g~gi~~l~~~l~~~~~~~~  177 (207)
T 1vg8_A          154 TSAKEAINVEQAFQTIARNALKQE  177 (207)
T ss_dssp             CBTTTTBSHHHHHHHHHHHHHHHH
T ss_pred             EeCCCCCCHHHHHHHHHHHHHHhc
Confidence            999999999999999999876543

>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*

Probab=100.00  E-value=9.4e-34  Score=198.37  Aligned_cols=164  Identities=30%  Similarity=0.531  Sum_probs=138.5

Q ss_pred             CCceeEEEEEcCCCCCHHHHHHHHhhCCCCCCCCCceeee-eeEEEEECCeEEEEEEEeCCCccccc-cccccCcCCCcE
Q 036449            3 ASRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDN-FSANVVVNGSTVNLGLWDTAGQEDYN-RLRPLSYRGADV   80 (197)
Q Consensus         3 ~~~~~~i~v~G~~~~GKstli~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~i~D~~G~~~~~-~~~~~~~~~~~~   80 (197)
                      ..+.+||+++|.+|+|||||++++..+.+...+.++.+.. ....+.+++..+.+.+||+||++.+. .++..++.++|+
T Consensus        17 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~d~   96 (189)
T 1z06_A           17 RSRIFKIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDIDGERIKIQLWDTAGQERFRKSMVQHYYRNVHA   96 (189)
T ss_dssp             --CEEEEEEECCTTSSHHHHHHHHHHSSCCSSCCCCCSCCEEEEEEEETTEEEEEEEEECCCSHHHHTTTHHHHHTTCCE
T ss_pred             CCceEEEEEECCCCCCHHHHHHHHHcCCCCCCCCCCcceEEEEEEEEECCEEEEEEEEECCCchhhhhhhhHHHhcCCCE
Confidence            3467999999999999999999999998887777777543 45566778888999999999999988 788889999999


Q ss_pred             EEEEEeCCCchhHHHHHHHHHHHHhhhC--CCCCEEEEeeCCcccCCcccccCCCCCCcccHHHHHHHHHHhCCCceEEe
Q 036449           81 FILAFSLISKASYENVSKKWIPELKHYA--PGVPIILVGTKLDLRDDKQFFIDHPGAVPISTAQGEELRKLIGAPAYIEC  158 (197)
Q Consensus        81 ~i~v~d~~~~~s~~~~~~~~~~~i~~~~--~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  158 (197)
                      +|+|||++++.+++.+ ..|+..+....  ++.|+++|+||+|+.+.+.          +..++++.+++..+. +++++
T Consensus        97 iilv~D~~~~~s~~~~-~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~----------v~~~~~~~~~~~~~~-~~~~~  164 (189)
T 1z06_A           97 VVFVYDMTNMASFHSL-PAWIEECKQHLLANDIPRILVGNKCDLRSAIQ----------VPTDLAQKFADTHSM-PLFET  164 (189)
T ss_dssp             EEEEEETTCHHHHHTH-HHHHHHHHHHCCCSCCCEEEEEECTTCGGGCC----------SCHHHHHHHHHHTTC-CEEEC
T ss_pred             EEEEEECcCHHHHHHH-HHHHHHHHHhcCCCCCCEEEEEECccccccce----------eCHHHHHHHHHHcCC-EEEEE
Confidence            9999999999999998 67888877664  6899999999999976543          567888899999988 89999


Q ss_pred             ccCCC---CCHHHHHHHHHHHHc
Q 036449          159 SSKTQ---QNVKAVFDAAIRVVL  178 (197)
Q Consensus       159 sa~~~---~~i~~l~~~i~~~~~  178 (197)
                      ||+++   .|++++|++|.+.+.
T Consensus       165 Sa~~~~~~~~i~~l~~~l~~~i~  187 (189)
T 1z06_A          165 SAKNPNDNDHVEAIFMTLAHKLK  187 (189)
T ss_dssp             CSSSGGGGSCHHHHHHHHC----
T ss_pred             eCCcCCcccCHHHHHHHHHHHHh
Confidence            99999   999999999988764

>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*

Probab=100.00  E-value=7.6e-34  Score=197.28  Aligned_cols=166  Identities=31%  Similarity=0.584  Sum_probs=125.5

Q ss_pred             CceeEEEEEcCCCCCHHHHHHHHhhCCCCCCCCCceeee-eeEEEEEC-CeEEEEEEEeCCCccccccccccCcCCCcEE
Q 036449            4 SRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDN-FSANVVVN-GSTVNLGLWDTAGQEDYNRLRPLSYRGADVF   81 (197)
Q Consensus         4 ~~~~~i~v~G~~~~GKstli~~~~~~~~~~~~~~~~~~~-~~~~~~~~-~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~   81 (197)
                      .+.++|+++|.+|+|||||++++....+...+.++.+.. ....+.++ +..+.+.+||+||++.+...+..++..+|++
T Consensus         6 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~   85 (182)
T 1ky3_A            6 KNILKVIILGDSGVGKTSLMHRYVNDKYSQQYKATIGADFLTKEVTVDGDKVATMQVWDTAGQERFQSLGVAFYRGADCC   85 (182)
T ss_dssp             -CEEEEEEECCTTSSHHHHHHHHHHSCCCTTC---CCCSCEEEEECCSSSCCEEEEEECCC----------CCSTTCCEE
T ss_pred             CceEEEEEECCCCCCHHHHHHHHHhCcCCcccCCccceEEEEEEEEEcCCcEEEEEEEECCCChHhhhhhHHHhhcCCEE
Confidence            567999999999999999999999998887777777433 34445555 5567899999999999999999999999999


Q ss_pred             EEEEeCCCchhHHHHHHHHHHHHhhhC-----CCCCEEEEeeCCcccCCcccccCCCCCCcccHHHHHHHHHHhCCCceE
Q 036449           82 ILAFSLISKASYENVSKKWIPELKHYA-----PGVPIILVGTKLDLRDDKQFFIDHPGAVPISTAQGEELRKLIGAPAYI  156 (197)
Q Consensus        82 i~v~d~~~~~s~~~~~~~~~~~i~~~~-----~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  156 (197)
                      |+|||++++.+++.+ ..|+..+....     ++.|+++|+||+|+.....         .+..+++..+++..+..+++
T Consensus        86 i~v~d~~~~~s~~~~-~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~---------~v~~~~~~~~~~~~~~~~~~  155 (182)
T 1ky3_A           86 VLVYDVTNASSFENI-KSWRDEFLVHANVNSPETFPFVILGNKIDAEESKK---------IVSEKSAQELAKSLGDIPLF  155 (182)
T ss_dssp             EEEEETTCHHHHHTH-HHHHHHHHHHHCCSCTTTCCEEEEEECTTSCGGGC---------CSCHHHHHHHHHHTTSCCEE
T ss_pred             EEEEECCChHHHHHH-HHHHHHHHHHhcccCcCCCcEEEEEECCccccccc---------cCCHHHHHHHHHhcCCCeEE
Confidence            999999999999998 77877766543     5899999999999954321         25677788888854444899


Q ss_pred             EeccCCCCCHHHHHHHHHHHHcC
Q 036449          157 ECSSKTQQNVKAVFDAAIRVVLQ  179 (197)
Q Consensus       157 ~~sa~~~~~i~~l~~~i~~~~~~  179 (197)
                      ++||++|.|++++|++|.+.+.+
T Consensus       156 ~~Sa~~~~gi~~l~~~l~~~~~~  178 (182)
T 1ky3_A          156 LTSAKNAINVDTAFEEIARSALQ  178 (182)
T ss_dssp             EEBTTTTBSHHHHHHHHHHHHHH
T ss_pred             EEecCCCCCHHHHHHHHHHHHHH
Confidence            99999999999999999998764

>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C

Probab=100.00  E-value=6.7e-35  Score=206.85  Aligned_cols=169  Identities=27%  Similarity=0.370  Sum_probs=110.0

Q ss_pred             CCCceeEEEEEcCCCCCHHHHHHHHhhC--CCCCCCCCcee-eeeeEEEEECCe--EEEEEEEeCCCccccccccccCcC
Q 036449            2 SASRFIKCVTVGDGAVGKTCLLISYTSN--TFPTDYVPTVF-DNFSANVVVNGS--TVNLGLWDTAGQEDYNRLRPLSYR   76 (197)
Q Consensus         2 ~~~~~~~i~v~G~~~~GKstli~~~~~~--~~~~~~~~~~~-~~~~~~~~~~~~--~~~~~i~D~~G~~~~~~~~~~~~~   76 (197)
                      ...+.++|+++|.+|+|||||++++..+  .+...+.+|.+ +.....+.+++.  .+.+.+||+||++.+...+..++.
T Consensus        16 ~~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~   95 (208)
T 2yc2_C           16 TATLRCKVAVVGEATVGKSALISMFTSKGSKFLKDYAMTSGVEVVVAPVTIPDTTVSVELFLLDTAGSDLYKEQISQYWN   95 (208)
T ss_dssp             SEEEEEEEEEC----------------------------------CEEEECTTSSEEEEEEEEETTTTHHHHHHHSTTCC
T ss_pred             ccccceEEEEECCCCCCHHHHHHHHHhCCCcccCCCCCccceEEEEEEEEECCcccEEEEEEEECCCcHHHHHHHHHHHh
Confidence            3456789999999999999999999998  77777778775 455666777776  789999999999999999999999


Q ss_pred             CCcEEEEEEeCCCchhHHHHHHHHHHHHhhhCC----CCCEEEEeeCCcccC-CcccccCCCCCCcccHHHHHHHHHHhC
Q 036449           77 GADVFILAFSLISKASYENVSKKWIPELKHYAP----GVPIILVGTKLDLRD-DKQFFIDHPGAVPISTAQGEELRKLIG  151 (197)
Q Consensus        77 ~~~~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~----~~~~ivv~nK~D~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~  151 (197)
                      ++|++|+|||++++.+++.+ ..|+..+....+    +.|+++|+||+|+.+ .+.          +..+++..+++.++
T Consensus        96 ~~d~~i~v~d~~~~~s~~~~-~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~~----------v~~~~~~~~~~~~~  164 (208)
T 2yc2_C           96 GVYYAILVFDVSSMESFESC-KAWFELLKSARPDRERPLRAVLVANKTDLPPQRHQ----------VRLDMAQDWATTNT  164 (208)
T ss_dssp             CCCEEEEEEETTCHHHHHHH-HHHHHHHHHHCSCTTSCCEEEEEEECC-------C----------CCHHHHHHHHHHTT
T ss_pred             hCcEEEEEEECCCHHHHHHH-HHHHHHHHHhhcccccCCcEEEEEECcccchhhcc----------CCHHHHHHHHHHcC
Confidence            99999999999999999998 688888887654    899999999999976 443          66788899999999


Q ss_pred             CCceEEeccCC-CCCHHHHHHHHHHHHcCCCc
Q 036449          152 APAYIECSSKT-QQNVKAVFDAAIRVVLQPPK  182 (197)
Q Consensus       152 ~~~~~~~sa~~-~~~i~~l~~~i~~~~~~~~~  182 (197)
                      . +++++||++ +.|++++|++|.+.+.+...
T Consensus       165 ~-~~~~~Sa~~~~~gi~~l~~~i~~~~~~~~~  195 (208)
T 2yc2_C          165 L-DFFDVSANPPGKDADAPFLSIATTFYRNYE  195 (208)
T ss_dssp             C-EEEECCC-------CHHHHHHHHHHHHHHH
T ss_pred             C-EEEEeccCCCCcCHHHHHHHHHHHHHHHHH
Confidence            7 999999999 99999999999998875443

>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}

Probab=100.00  E-value=2.2e-33  Score=198.46  Aligned_cols=165  Identities=29%  Similarity=0.501  Sum_probs=139.7

Q ss_pred             CCCCceeEEEEEcCCCCCHHHHHHHHhhCCCCCCCCCceeeee-eEEEEECCeE--------------------------
Q 036449            1 MSASRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNF-SANVVVNGST--------------------------   53 (197)
Q Consensus         1 m~~~~~~~i~v~G~~~~GKstli~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~--------------------------   53 (197)
                      |...+.++|+++|.+|+|||||++++.+..+...+.++.+..+ ...+.+++..                          
T Consensus         2 m~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (208)
T 3clv_A            2 MEKKSSYKTVLLGESSVGKSSIVLRLTKDTFHENTNTTIGASFCTYVVNLNDINIKNNSNNEKNNNINSINDDNNVIITN   81 (208)
T ss_dssp             CCCCSSEEEEEECCTTSSHHHHHHHHHHSCCCSSCCCCCSCEEEEEEEETTC----------------------------
T ss_pred             CCCCcceEEEEECCCCCCHHHHHHHHHhCcCCCCcCccccceeEEEEEEecCcccccccccccccccccccccccccccc
Confidence            7788899999999999999999999999988877777775443 3344444433                          


Q ss_pred             -----------EEEEEEeCCCccccccccccCcCCCcEEEEEEeCCCchhHHHHHHHHHHHHhhhCCCCCEEEEeeCCcc
Q 036449           54 -----------VNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDL  122 (197)
Q Consensus        54 -----------~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~~~ivv~nK~D~  122 (197)
                                 +.+.+||+||++.+...+..++..+|++|+|+|++++.+++.+ ..|+..+....+ .|+++|+||+| 
T Consensus        82 ~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~D~~~~~s~~~~-~~~~~~i~~~~~-~piilv~NK~D-  158 (208)
T 3clv_A           82 QHNNYNENLCNIKFDIWDTAGQERYASIVPLYYRGATCAIVVFDISNSNTLDRA-KTWVNQLKISSN-YIIILVANKID-  158 (208)
T ss_dssp             ---CCCTTTCEEEEEEEECTTGGGCTTTHHHHHTTCSEEEEEEETTCHHHHHHH-HHHHHHHHHHSC-CEEEEEEECTT-
T ss_pred             ccccccCccceeEEEEEECCCcHHHHHHHHHHhcCCCEEEEEEECCCHHHHHHH-HHHHHHHHhhCC-CcEEEEEECCC-
Confidence                       7899999999999999999999999999999999999999988 688888876654 99999999999 


Q ss_pred             cCCcccccCCCCCCcccHHHHHHHHHHhCCCceEEeccCCCCCHHHHHHHHHHHHcC
Q 036449          123 RDDKQFFIDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQQNVKAVFDAAIRVVLQ  179 (197)
Q Consensus       123 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~l~~~i~~~~~~  179 (197)
                      ...+.          +..++++.+++..+. +++++||+++.|++++|++|.+.+.+
T Consensus       159 ~~~~~----------~~~~~~~~~~~~~~~-~~~~~Sa~~~~~i~~l~~~l~~~~~~  204 (208)
T 3clv_A          159 KNKFQ----------VDILEVQKYAQDNNL-LFIQTSAKTGTNIKNIFYMLAEEIYK  204 (208)
T ss_dssp             CC-CC----------SCHHHHHHHHHHTTC-EEEEECTTTCTTHHHHHHHHHHHHHH
T ss_pred             ccccc----------CCHHHHHHHHHHcCC-cEEEEecCCCCCHHHHHHHHHHHHHH
Confidence            33222          567888899999988 99999999999999999999988753

>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=100.00  E-value=4.5e-35  Score=205.46  Aligned_cols=165  Identities=32%  Similarity=0.621  Sum_probs=144.3

Q ss_pred             CceeEEEEEcCCCCCHHHHHHHHhhCCCCCCCCCceeeee-eEEEEECCeEEEEEEEeCCCccccccccccCcCCCcEEE
Q 036449            4 SRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNF-SANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFI   82 (197)
Q Consensus         4 ~~~~~i~v~G~~~~GKstli~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i   82 (197)
                      +..+||+++|.+|+|||||++++.++.+...+.++.+..+ ......++..+.+.+||+||++.+...+..++.++|++|
T Consensus        21 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i  100 (191)
T 3dz8_A           21 DYMFKLLIIGNSSVGKTSFLFRYADDTFTPAFVSTVGIDFKVKTVYRHEKRVKLQIWDTAGQERYRTITTAYYRGAMGFI  100 (191)
T ss_dssp             EECEEEEEEESTTSSHHHHHHHHHHHTTCCCEEEEETTTEEEEEEEETTTTEEEEEECHHHHHHCHHHHHHHHTTCCEEE
T ss_pred             CeeeEEEEECCCCcCHHHHHHHHhcCCCCcccCCCeeeEEEEEEEEECCEEEEEEEEeCCChHHHHHHHHHHHccCCEEE
Confidence            4569999999999999999999999888777777765333 455666777788999999999999999999999999999


Q ss_pred             EEEeCCCchhHHHHHHHHHHHHhhhC-CCCCEEEEeeCCcccCCcccccCCCCCCcccHHHHHHHHHHhCCCceEEeccC
Q 036449           83 LAFSLISKASYENVSKKWIPELKHYA-PGVPIILVGTKLDLRDDKQFFIDHPGAVPISTAQGEELRKLIGAPAYIECSSK  161 (197)
Q Consensus        83 ~v~d~~~~~s~~~~~~~~~~~i~~~~-~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~  161 (197)
                      +|||++++.+++.+ ..|+..+.... ++.|+++|+||+|+.+.+.          +..++++.+++..+. +++++||+
T Consensus       101 ~v~d~~~~~s~~~~-~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~----------~~~~~~~~~~~~~~~-~~~~~Sa~  168 (191)
T 3dz8_A          101 LMYDITNEESFNAV-QDWATQIKTYSWDNAQVILVGNKCDMEEERV----------VPTEKGQLLAEQLGF-DFFEASAK  168 (191)
T ss_dssp             EEEETTCHHHHHTH-HHHHHHHHHHSCTTCEEEEEEECTTCGGGCC----------SCHHHHHHHHHHHTC-EEEECBTT
T ss_pred             EEEECcCHHHHHHH-HHHHHHHHHhcCCCCCEEEEEECCCCccccc----------cCHHHHHHHHHHcCC-eEEEEECC
Confidence            99999999999998 67998888866 6899999999999976543          677888899999998 89999999


Q ss_pred             CCCCHHHHHHHHHHHHcCC
Q 036449          162 TQQNVKAVFDAAIRVVLQP  180 (197)
Q Consensus       162 ~~~~i~~l~~~i~~~~~~~  180 (197)
                      +|.|++++|++|.+.+.+.
T Consensus       169 ~~~gi~~l~~~l~~~i~~~  187 (191)
T 3dz8_A          169 ENISVRQAFERLVDAICDK  187 (191)
T ss_dssp             TTBSHHHHHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHHh
Confidence            9999999999999988654

>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...

Probab=100.00  E-value=2.7e-33  Score=191.46  Aligned_cols=162  Identities=35%  Similarity=0.579  Sum_probs=142.9

Q ss_pred             ceeEEEEEcCCCCCHHHHHHHHhhCCCCCCCCCceeeeeeEEEEECCeEEEEEEEeCCCccccccccccCcCCCcEEEEE
Q 036449            5 RFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILA   84 (197)
Q Consensus         5 ~~~~i~v~G~~~~GKstli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v   84 (197)
                      +.++|+++|.+|+|||||++++..+.+...+.++....+......++..+.+.+||+||++++...+..++..+|++++|
T Consensus         2 ~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v   81 (166)
T 2ce2_X            2 TEYKLVVVGAGGVGKSALTIQLIQNHFVDECDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCV   81 (166)
T ss_dssp             CEEEEEEEESTTSSHHHHHHHHHHSSCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCCCSSCCHHHHHHHHHCSEEEEE
T ss_pred             ceeEEEEECCCCCCHHHHHHHHHhCcCccccCCccceEEEEEEEECCEEEEEEEEECCCchhhhHHHHHhhccCCEEEEE
Confidence            35899999999999999999999998888888888777777777888889999999999999998888899999999999


Q ss_pred             EeCCCchhHHHHHHHHHHHHhhhC--CCCCEEEEeeCCcccCCcccccCCCCCCcccHHHHHHHHHHhCCCceEEeccCC
Q 036449           85 FSLISKASYENVSKKWIPELKHYA--PGVPIILVGTKLDLRDDKQFFIDHPGAVPISTAQGEELRKLIGAPAYIECSSKT  162 (197)
Q Consensus        85 ~d~~~~~s~~~~~~~~~~~i~~~~--~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~  162 (197)
                      ||++++.+++.+ ..|+..+....  ++.|+++|+||+|+.+..           ...+++..+++..+. +++++||++
T Consensus        82 ~d~~~~~~~~~~-~~~~~~i~~~~~~~~~p~iiv~nK~Dl~~~~-----------~~~~~~~~~~~~~~~-~~~~~Sa~~  148 (166)
T 2ce2_X           82 FAINNTKSFEDI-HQYREQIKRVKDSDDVPMVLVGNKSDLAART-----------VESRQAQDLARSYGI-PYIETSAKT  148 (166)
T ss_dssp             EETTCHHHHHHH-HHHHHHHHHHHTCSCCCEEEEEECTTCSCCC-----------SCHHHHHHHHHHHTC-CEEEECTTT
T ss_pred             EECCCHHHHHHH-HHHHHHHHHhcCCCCCcEEEEEEchhhhhcc-----------cCHHHHHHHHHHcCC-eEEEecCCC
Confidence            999999999988 78888777654  389999999999997622           456778889999998 899999999


Q ss_pred             CCCHHHHHHHHHHHHcC
Q 036449          163 QQNVKAVFDAAIRVVLQ  179 (197)
Q Consensus       163 ~~~i~~l~~~i~~~~~~  179 (197)
                      +.|++++|++|.+.+.+
T Consensus       149 ~~gi~~l~~~l~~~~~~  165 (166)
T 2ce2_X          149 RQGVEDAFYTLVREIRQ  165 (166)
T ss_dssp             CTTHHHHHHHHHHHHHT
T ss_pred             CCCHHHHHHHHHHHHHh
Confidence            99999999999998754

>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8

Probab=100.00  E-value=3.8e-33  Score=195.93  Aligned_cols=165  Identities=30%  Similarity=0.622  Sum_probs=144.0

Q ss_pred             ceeEEEEEcCCCCCHHHHHHHHhhCCCCCCCCCceeeee-eEEEEECCeEEEEEEEeCCCccccccccccCcCCCcEEEE
Q 036449            5 RFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNF-SANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFIL   83 (197)
Q Consensus         5 ~~~~i~v~G~~~~GKstli~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~   83 (197)
                      +.++|+++|.+|+|||||++++....+...+.++.+..+ ...+.+++..+.+.+||+||++.+...+..++..+|++|+
T Consensus        14 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii~   93 (195)
T 1x3s_A           14 TTLKILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNKAKLAIWDTAGQERFRTLTPSYYRGAQGVIL   93 (195)
T ss_dssp             EEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECSSGGGCCSHHHHHTTCCEEEE
T ss_pred             CceEEEEECCCCCCHHHHHHHHHcCCCCccCCCccceEEEEEEEEECCeEEEEEEEeCCCchhhhhhhHHHhccCCEEEE
Confidence            569999999999999999999999998877777775444 4566778888999999999999999999999999999999


Q ss_pred             EEeCCCchhHHHHHHHHHHHHhhhC--CCCCEEEEeeCCcccCCcccccCCCCCCcccHHHHHHHHHHhCCCceEEeccC
Q 036449           84 AFSLISKASYENVSKKWIPELKHYA--PGVPIILVGTKLDLRDDKQFFIDHPGAVPISTAQGEELRKLIGAPAYIECSSK  161 (197)
Q Consensus        84 v~d~~~~~s~~~~~~~~~~~i~~~~--~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~  161 (197)
                      |||++++.+++.+ ..|+..+....  ++.|+++|+||+|+.+..           +..+++..+++..+. +++++||+
T Consensus        94 v~d~~~~~s~~~~-~~~~~~i~~~~~~~~~p~ilv~nK~Dl~~~~-----------~~~~~~~~~~~~~~~-~~~~~Sa~  160 (195)
T 1x3s_A           94 VYDVTRRDTFVKL-DNWLNELETYCTRNDIVNMLVGNKIDKENRE-----------VDRNEGLKFARKHSM-LFIEASAK  160 (195)
T ss_dssp             EEETTCHHHHHTH-HHHHHHHTTCCSCSCCEEEEEEECTTSSSCC-----------SCHHHHHHHHHHTTC-EEEECCTT
T ss_pred             EEECcCHHHHHHH-HHHHHHHHHhcCcCCCcEEEEEECCcCcccc-----------cCHHHHHHHHHHcCC-EEEEecCC
Confidence            9999999999998 68888887754  579999999999994422           566778889998887 89999999


Q ss_pred             CCCCHHHHHHHHHHHHcCCCc
Q 036449          162 TQQNVKAVFDAAIRVVLQPPK  182 (197)
Q Consensus       162 ~~~~i~~l~~~i~~~~~~~~~  182 (197)
                      ++.|++++|++|.+.+.+.+.
T Consensus       161 ~~~gi~~l~~~l~~~~~~~~~  181 (195)
T 1x3s_A          161 TCDGVQCAFEELVEKIIQTPG  181 (195)
T ss_dssp             TCTTHHHHHHHHHHHHHTSGG
T ss_pred             CCCCHHHHHHHHHHHHHhhhh
Confidence            999999999999999887643

>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*

Probab=100.00  E-value=3.2e-34  Score=204.85  Aligned_cols=167  Identities=37%  Similarity=0.614  Sum_probs=141.2

Q ss_pred             CCceeEEEEEcCCCCCHHHHHHHHhhCCCCCCCCCceeeee-eEEEEECCe----------EEEEEEEeCCCcccccccc
Q 036449            3 ASRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNF-SANVVVNGS----------TVNLGLWDTAGQEDYNRLR   71 (197)
Q Consensus         3 ~~~~~~i~v~G~~~~GKstli~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~----------~~~~~i~D~~G~~~~~~~~   71 (197)
                      .++.++|+++|.+|+|||||+++|..+.+...+.++.+..+ ...+.+++.          .+.+++||+||++.+...+
T Consensus        22 ~~~~~ki~vvG~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~  101 (217)
T 2f7s_A           22 YDYLIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYNAQGPNGSSGKAFKVHLQLWDTAGQERFRSLT  101 (217)
T ss_dssp             CSEEEEEEEESCTTSSHHHHHHHHHCSCCCCEEEEEEEEEEEEEEEEEEC-------CCEEEEEEEEEEEESHHHHHHHH
T ss_pred             cceeEEEEEECcCCCCHHHHHHHHhcCCCCcCCCCceeEEEEEEEEEECCccccccccCceeEEEEEEECCCcHhHHhHH
Confidence            35679999999999999999999999888776666665443 344555554          6889999999999999999


Q ss_pred             ccCcCCCcEEEEEEeCCCchhHHHHHHHHHHHHhhhC--CCCCEEEEeeCCcccCCcccccCCCCCCcccHHHHHHHHHH
Q 036449           72 PLSYRGADVFILAFSLISKASYENVSKKWIPELKHYA--PGVPIILVGTKLDLRDDKQFFIDHPGAVPISTAQGEELRKL  149 (197)
Q Consensus        72 ~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~i~~~~--~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~  149 (197)
                      ..++..+|++|+|||++++.+++.+ ..|+..+....  ++.|+++|+||+|+...+.          +..+++..+++.
T Consensus       102 ~~~~~~~d~iilV~D~~~~~s~~~~-~~~l~~i~~~~~~~~~piilV~NK~Dl~~~~~----------v~~~~~~~~~~~  170 (217)
T 2f7s_A          102 TAFFRDAMGFLLMFDLTSQQSFLNV-RNWMSQLQANAYCENPDIVLIGNKADLPDQRE----------VNERQARELADK  170 (217)
T ss_dssp             HHHHTTCCEEEEEEETTCHHHHHHH-HHHHHTCCCCCTTTCCEEEEEEECTTCGGGCC----------SCHHHHHHHHHH
T ss_pred             HHHhcCCCEEEEEEECcCHHHHHHH-HHHHHHHHHhcCcCCCCEEEEEECCccccccc----------cCHHHHHHHHHH
Confidence            9999999999999999999999988 68887776654  5899999999999976443          567888899999


Q ss_pred             hCCCceEEeccCCCCCHHHHHHHHHHHHcCCC
Q 036449          150 IGAPAYIECSSKTQQNVKAVFDAAIRVVLQPP  181 (197)
Q Consensus       150 ~~~~~~~~~sa~~~~~i~~l~~~i~~~~~~~~  181 (197)
                      ++. +++++||+++.|++++|++|.+.+.+..
T Consensus       171 ~~~-~~~~~Sa~~g~gi~~l~~~l~~~i~~~~  201 (217)
T 2f7s_A          171 YGI-PYFETSAATGQNVEKAVETLLDLIMKRM  201 (217)
T ss_dssp             TTC-CEEEEBTTTTBTHHHHHHHHHHHHHHHH
T ss_pred             CCC-cEEEEECCCCCCHHHHHHHHHHHHHHHh
Confidence            998 8999999999999999999999887643

>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*

Probab=100.00  E-value=3.2e-33  Score=196.21  Aligned_cols=165  Identities=24%  Similarity=0.438  Sum_probs=130.8

Q ss_pred             CceeEEEEEcCCCCCHHHHHHHHhh--CCCCCCCCCceeeeeeEEEEECCeEEEEEEEeCCCccc-cccccccCcCCCcE
Q 036449            4 SRFIKCVTVGDGAVGKTCLLISYTS--NTFPTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQED-YNRLRPLSYRGADV   80 (197)
Q Consensus         4 ~~~~~i~v~G~~~~GKstli~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~-~~~~~~~~~~~~~~   80 (197)
                      .+.+||+++|.+|||||||+++|.+  ..+...+.++..+.+...+.+++..+.+.+||++|++. +..++..+++.+|+
T Consensus         4 ~~~~kv~lvG~~~vGKSsL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Dt~~~~~~~~~~~~~~~~~~~~   83 (192)
T 2cjw_A            4 MTYYRVVLIGEQGVGKSTLANIFAGVHDSMDSDXEVLGEDTYERTLMVDGESATIILLDMWENKGENEWLHDHCMQVGDA   83 (192)
T ss_dssp             CCEEEEEEECSTTSSHHHHHHHHHHHSCCC----GGGCTTEEEEEEEETTEEEEEEEECCCCC----CTTGGGHHHHCSE
T ss_pred             CceEEEEEECCCCCCHHHHHHHHhcCcCCcCccccccceeEEEEEEEECCeEEEEEEEEeccCcchhhhHHHhhcccCCE
Confidence            4579999999999999999999985  33444444444455566777888889999999999876 55566777888999


Q ss_pred             EEEEEeCCCchhHHHHHHHHHHHHhhhC--CCCCEEEEeeCCcccCCcccccCCCCCCcccHHHHHHHHHHhCCCceEEe
Q 036449           81 FILAFSLISKASYENVSKKWIPELKHYA--PGVPIILVGTKLDLRDDKQFFIDHPGAVPISTAQGEELRKLIGAPAYIEC  158 (197)
Q Consensus        81 ~i~v~d~~~~~s~~~~~~~~~~~i~~~~--~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  158 (197)
                      +++|||++++++|+.+ ..|...+....  ++.|+++|+||+|+...+.          +..++++.++...+. +|+++
T Consensus        84 ~i~v~dv~~~~s~~~~-~~~~~~l~~~~~~~~~piilV~NK~Dl~~~r~----------v~~~~~~~~a~~~~~-~~~e~  151 (192)
T 2cjw_A           84 YLIVYSITDRASFEKA-SELRIQLRRARQTEDIPIILVGNKSDLVRXRE----------VSVSEGRAXAVVFDX-KFIET  151 (192)
T ss_dssp             EEEEEETTCHHHHHHH-HHHHHHHHHHTTTSCCCEEEEEECTTCGGGCC----------SCHHHHHHHHHHTTC-EEEEC
T ss_pred             EEEEEECCCHHHHHHH-HHHHHHHHHhhCCCCCeEEEEEechhhhcccc----------ccHHHHHHHHHHhCC-ceEEe
Confidence            9999999999999998 67777666543  5899999999999965433          566777788888887 89999


Q ss_pred             ccCCCCCHHHHHHHHHHHHcCC
Q 036449          159 SSKTQQNVKAVFDAAIRVVLQP  180 (197)
Q Consensus       159 sa~~~~~i~~l~~~i~~~~~~~  180 (197)
                      ||++|.|++++|+++++.+...
T Consensus       152 SA~~g~~v~~lf~~l~~~~~~~  173 (192)
T 2cjw_A          152 SAAVQHNVKELFEGIVRQVRLR  173 (192)
T ss_dssp             BTTTTBSHHHHHHHHHHHHHHH
T ss_pred             ccccCCCHHHHHHHHHHHHHhh
Confidence            9999999999999999988543

>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=100.00  E-value=1.6e-32  Score=195.35  Aligned_cols=164  Identities=32%  Similarity=0.651  Sum_probs=140.4

Q ss_pred             CceeEEEEEcCCCCCHHHHHHHHhhCCCCCCCCCceeeee-eEEEEECCeEEEEEEEeCCCccccccccccCcCCCcEEE
Q 036449            4 SRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNF-SANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFI   82 (197)
Q Consensus         4 ~~~~~i~v~G~~~~GKstli~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i   82 (197)
                      ...++|+++|.+|+|||||++++....+...+.++.+..+ ...+.+++..+.+.+||+||++.+...+..++..+|++|
T Consensus        18 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii   97 (213)
T 3cph_A           18 DSIMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQLWDTAGQERFRTITTAYYRGAMGII   97 (213)
T ss_dssp             --CEEEEEECSTTSSHHHHHHHHHHCCCCCSSSCCCSCCEEEEEEEETTEEEEEEEECCTTGGGGTCCCHHHHTTCSEEE
T ss_pred             CcceEEEEECCCCCCHHHHHHHHHhCCCCcccCCcccceEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHhccCCEEE
Confidence            4569999999999999999999999988777777775443 456677888889999999999999999999999999999


Q ss_pred             EEEeCCCchhHHHHHHHHHHHHhhhC-CCCCEEEEeeCCcccCCcccccCCCCCCcccHHHHHHHHHHhCCCceEEeccC
Q 036449           83 LAFSLISKASYENVSKKWIPELKHYA-PGVPIILVGTKLDLRDDKQFFIDHPGAVPISTAQGEELRKLIGAPAYIECSSK  161 (197)
Q Consensus        83 ~v~d~~~~~s~~~~~~~~~~~i~~~~-~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~  161 (197)
                      +|||++++.+++.+ ..|+..+.... ++.|+++|+||+|+.. +.          +..+++..++..++. +++++||+
T Consensus        98 ~v~d~~~~~s~~~~-~~~~~~i~~~~~~~~piilv~nK~Dl~~-~~----------~~~~~~~~~~~~~~~-~~~~~Sa~  164 (213)
T 3cph_A           98 LVYDVTDERTFTNI-KQWFKTVNEHANDEAQLLLVGNKSDMET-RV----------VTADQGEALAKELGI-PFIESSAK  164 (213)
T ss_dssp             EEEETTCHHHHHTH-HHHHHHHHHHTTTCSEEEEEEECTTCSS-CC----------SCHHHHHHHHHHHTC-CEEECBTT
T ss_pred             EEEECCCHHHHHHH-HHHHHHHHHhcCCCCCEEEEEECCCCcc-cc----------cCHHHHHHHHHHcCC-EEEEEeCC
Confidence            99999999999988 68888887766 4799999999999943 22          556778888888988 89999999


Q ss_pred             CCCCHHHHHHHHHHHHcCC
Q 036449          162 TQQNVKAVFDAAIRVVLQP  180 (197)
Q Consensus       162 ~~~~i~~l~~~i~~~~~~~  180 (197)
                      ++.|++++|++|.+.+.+.
T Consensus       165 ~~~gi~~l~~~l~~~~~~~  183 (213)
T 3cph_A          165 NDDNVNEIFFTLAKLIQEK  183 (213)
T ss_dssp             TTBSSHHHHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHHH
Confidence            9999999999999887653

>2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase, cell adhesion, nucleotide-binding, protein engineering, RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa} PDB: 2wkr_A* 2wkp_A*

Probab=100.00  E-value=4.2e-32  Score=205.31  Aligned_cols=177  Identities=63%  Similarity=1.071  Sum_probs=151.7

Q ss_pred             CceeEEEEEcCCCCCHHHHHHHHhhCCCCCCCCCceeeeeeEEEEECCeEEEEEEEeCCCccccccccccCcCCCcEEEE
Q 036449            4 SRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFIL   83 (197)
Q Consensus         4 ~~~~~i~v~G~~~~GKstli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~   83 (197)
                      ...++|+++|.+|+|||||++++..+.+...+.++++..+...+.+++..+.+.+||+||++.+...+..++..+|++++
T Consensus       153 ~~~~~i~i~G~~~~GKssli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~  232 (332)
T 2wkq_A          153 KELIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGLEDYDRLRPLSYPQTDVFLI  232 (332)
T ss_dssp             TTCEEEEEEESTTSSHHHHHHHHHHSCCCCSCCCCSEEEEEEEEEETTEEEEEEEEEECCCGGGTTTGGGGCTTCSEEEE
T ss_pred             cceeEEEEECCCCCChHHHHHHHHhCCCCcccCCcccceeEEEEEECCEEEEEEEEeCCCchhhhHHHHHhccCCCEEEE
Confidence            35689999999999999999999999998888899888887778888988999999999999999999999999999999


Q ss_pred             EEeCCCchhHHHHHHHHHHHHhhhCCCCCEEEEeeCCcccCCcccc--cCCCCCCcccHHHHHHHHHHhCCCceEEeccC
Q 036449           84 AFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLRDDKQFF--IDHPGAVPISTAQGEELRKLIGAPAYIECSSK  161 (197)
Q Consensus        84 v~d~~~~~s~~~~~~~~~~~i~~~~~~~~~ivv~nK~D~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~  161 (197)
                      |||++++.+++.+...|+..+....++.|+++|+||+|+.+.....  ........+..+++..+++..+..+++++||+
T Consensus       233 v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~  312 (332)
T 2wkq_A          233 CFSLVSPASFHHVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSAL  312 (332)
T ss_dssp             EEETTCHHHHHHHHHTHHHHHHHHCTTSCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEECCTT
T ss_pred             EEeCCCHHHHHHHHHHHHHHHHhhCCCCcEEEEEEchhcccccchhhhccccccccccHHHHHHHHHHcCCcEEEEecCC
Confidence            9999999999998558999998887899999999999996542100  00011234677888999999987689999999


Q ss_pred             CCCCHHHHHHHHHHHHcCC
Q 036449          162 TQQNVKAVFDAAIRVVLQP  180 (197)
Q Consensus       162 ~~~~i~~l~~~i~~~~~~~  180 (197)
                      +|.|++++|+.|.+.+..+
T Consensus       313 ~~~gi~~l~~~l~~~~~~~  331 (332)
T 2wkq_A          313 TQRGLKTVFDEAIRAVLCP  331 (332)
T ss_dssp             TCTTHHHHHHHHHHHHHC-
T ss_pred             CCcCHHHHHHHHHHHHhcC
Confidence            9999999999999988754

>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*

Probab=100.00  E-value=1.4e-33  Score=198.43  Aligned_cols=165  Identities=24%  Similarity=0.284  Sum_probs=130.9

Q ss_pred             CCceeEEEEEcCCCCCHHHHHHHHhhCCCCCCC-----------CCceeeee-eEEE-EECCeEEEEEEEeCCCcccccc
Q 036449            3 ASRFIKCVTVGDGAVGKTCLLISYTSNTFPTDY-----------VPTVFDNF-SANV-VVNGSTVNLGLWDTAGQEDYNR   69 (197)
Q Consensus         3 ~~~~~~i~v~G~~~~GKstli~~~~~~~~~~~~-----------~~~~~~~~-~~~~-~~~~~~~~~~i~D~~G~~~~~~   69 (197)
                      .++.+||+++|.+|||||||++.+. +.+...+           .+|.+..+ .... .+++..+.+++||+||++.+..
T Consensus        11 ~~~~~ki~vvG~~~~GKssL~~~l~-~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~   89 (198)
T 3t1o_A           11 REINFKIVYYGPGLSGKTTNLKWIY-SKVPEGRKGEMVSLATEDERTLFFDFLPLDIGEVKGFKTRFHLYTVPGQVFYNA   89 (198)
T ss_dssp             TEEEEEEEEECSTTSSHHHHHHHHH-HTSCGGGBCCCEEEECSSCEEEEEEECCSSCCCSSSCEEEEEEEECCSCCSCSH
T ss_pred             cccccEEEEECCCCCCHHHHHHHHH-hhccccccccccccccccccceeeeecccccccccCCceEEEEEeCCChHHHHH
Confidence            3567999999999999999996554 4444442           23333222 2222 4566788999999999999999


Q ss_pred             ccccCcCCCcEEEEEEeCC------CchhHHHHHHHHHHHHhhhCCCCCEEEEeeCCcccCCcccccCCCCCCcccHHHH
Q 036449           70 LRPLSYRGADVFILAFSLI------SKASYENVSKKWIPELKHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPISTAQG  143 (197)
Q Consensus        70 ~~~~~~~~~~~~i~v~d~~------~~~s~~~~~~~~~~~i~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~  143 (197)
                      .+..++.++|++|+|||++      +.++++.+ ..|+..+....++.|+++|+||+|+.+.            +..+++
T Consensus        90 ~~~~~~~~~d~~i~v~D~~~~~~~~~~~s~~~l-~~~l~~~~~~~~~~piilv~NK~Dl~~~------------~~~~~~  156 (198)
T 3t1o_A           90 SRKLILRGVDGIVFVADSAPNRLRANAESMRNM-RENLAEYGLTLDDVPIVIQVNKRDLPDA------------LPVEMV  156 (198)
T ss_dssp             HHHHHTTTCCEEEEEEECCGGGHHHHHHHHHHH-HHHHHHTTCCTTSSCEEEEEECTTSTTC------------CCHHHH
T ss_pred             HHHHHHhcCCEEEEEEECCcchhhHhHHHHHHH-HHHHHhhccccCCCCEEEEEEchhcccc------------cCHHHH
Confidence            9999999999999999999      45666666 5677776544578999999999999653            567788


Q ss_pred             HHHHHHhCCCceEEeccCCCCCHHHHHHHHHHHHcCCC
Q 036449          144 EELRKLIGAPAYIECSSKTQQNVKAVFDAAIRVVLQPP  181 (197)
Q Consensus       144 ~~~~~~~~~~~~~~~sa~~~~~i~~l~~~i~~~~~~~~  181 (197)
                      .++++..+..+++++||++|.|++++|++|.+.+.+..
T Consensus       157 ~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~~~i~~~~  194 (198)
T 3t1o_A          157 RAVVDPEGKFPVLEAVATEGKGVFETLKEVSRLVLARV  194 (198)
T ss_dssp             HHHHCTTCCSCEEECBGGGTBTHHHHHHHHHHHHHHHH
T ss_pred             HHHHHhcCCceEEEEecCCCcCHHHHHHHHHHHHHHHh
Confidence            88988888768999999999999999999999887543

>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi}

Probab=100.00  E-value=4e-33  Score=199.29  Aligned_cols=168  Identities=29%  Similarity=0.437  Sum_probs=138.7

Q ss_pred             CceeEEEEEcCCCCCHHHHHHHHhhCCCCCCCCCceeeeeeEE-EEE-CCeEEEEEEEeCCCccccccccccCcCCCcEE
Q 036449            4 SRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSAN-VVV-NGSTVNLGLWDTAGQEDYNRLRPLSYRGADVF   81 (197)
Q Consensus         4 ~~~~~i~v~G~~~~GKstli~~~~~~~~~~~~~~~~~~~~~~~-~~~-~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~   81 (197)
                      ...+||+++|.+|||||||++++.++.+...+.++.+...... ... .+..+.+.+||+||++.+...+..++.++|++
T Consensus         9 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~   88 (218)
T 4djt_A            9 ELTYKICLIGDGGVGKTTYINRVLDGRFEKNYNATVGAVNHPVTFLDDQGNVIKFNVWDTAGQEKKAVLKDVYYIGASGA   88 (218)
T ss_dssp             -CEEEEEEECCTTSSHHHHHCBCTTCSTTCEEETTTTEEEEEEEEEBTTSCEEEEEEEEECSGGGTSCCCHHHHTTCSEE
T ss_pred             cCccEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeeEEEEEEeCCCcEEEEEEEecCCchhhchHHHHHhhcCCEE
Confidence            4679999999999999999999998888776666665444333 222 34448899999999999999999999999999


Q ss_pred             EEEEeCCCchhHHHHHHHHHHHHhhhC-CCCCEEEEeeCCcccCCcccccCCCCCCcccHHHHHHHHHHhCCCceEEecc
Q 036449           82 ILAFSLISKASYENVSKKWIPELKHYA-PGVPIILVGTKLDLRDDKQFFIDHPGAVPISTAQGEELRKLIGAPAYIECSS  160 (197)
Q Consensus        82 i~v~d~~~~~s~~~~~~~~~~~i~~~~-~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa  160 (197)
                      |+|||++++.+++.+ ..|+..+.... .+.|+++|+||+|+.+...          +..+++..++...+. +++++||
T Consensus        89 i~v~d~~~~~s~~~~-~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~----------~~~~~~~~~~~~~~~-~~~~~Sa  156 (218)
T 4djt_A           89 ILFFDVTSRITCQNL-ARWVKEFQAVVGNEAPIVVCANKIDIKNRQK----------ISKKLVMEVLKGKNY-EYFEISA  156 (218)
T ss_dssp             EEEEETTCHHHHHTH-HHHHHHHHHHHCSSSCEEEEEECTTCC--------------CCHHHHHHHTTTCCC-EEEEEBT
T ss_pred             EEEEeCCCHHHHHHH-HHHHHHHHHhcCCCCCEEEEEECCCCccccc----------cCHHHHHHHHHHcCC-cEEEEec
Confidence            999999999999998 68888887765 4699999999999976543          667778888888887 8999999


Q ss_pred             CCCCCHHHHHHHHHHHHcCCCch
Q 036449          161 KTQQNVKAVFDAAIRVVLQPPKT  183 (197)
Q Consensus       161 ~~~~~i~~l~~~i~~~~~~~~~~  183 (197)
                      ++|.|++++|++|.+.+......
T Consensus       157 ~~g~gv~~l~~~l~~~~~~~~~~  179 (218)
T 4djt_A          157 KTAHNFGLPFLHLARIFTGRPDL  179 (218)
T ss_dssp             TTTBTTTHHHHHHHHHHHCCTTC
T ss_pred             CCCCCHHHHHHHHHHHHhccccc
Confidence            99999999999999998876433

>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens}

Probab=100.00  E-value=1.6e-34  Score=203.92  Aligned_cols=165  Identities=31%  Similarity=0.607  Sum_probs=133.1

Q ss_pred             CceeEEEEEcCCCCCHHHHHHHHhhCCCCCCCCCceee-eeeEEEEECCeEEEEEEEeCCCccccccccccCcCCCcEEE
Q 036449            4 SRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFD-NFSANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFI   82 (197)
Q Consensus         4 ~~~~~i~v~G~~~~GKstli~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i   82 (197)
                      .+.+||+++|.+|||||||++++....+...+.++.+. .....+.+++..+.+.+||+||++.+...+..++.++|++|
T Consensus        31 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i  110 (199)
T 3l0i_B           31 DYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGII  110 (199)
T ss_dssp             SEEEEEEEECCTTSCCTTTTTSSBCCCCCCHHHHHHCCSEEEEEEEETTEEEEEEEECCTTCTTCCCCSCC--CCCSEEE
T ss_pred             CcceEEEEECCCCCCHHHHHHHHhcCCCCCCcCCcccceEEEEEEEECCEEEEEEEEECCCcHhHHHHHHHHhhcCCEEE
Confidence            45799999999999999999999998877666666643 33456677888889999999999999999999999999999


Q ss_pred             EEEeCCCchhHHHHHHHHHHHHhhhC-CCCCEEEEeeCCcccCCcccccCCCCCCcccHHHHHHHHHHhCCCceEEeccC
Q 036449           83 LAFSLISKASYENVSKKWIPELKHYA-PGVPIILVGTKLDLRDDKQFFIDHPGAVPISTAQGEELRKLIGAPAYIECSSK  161 (197)
Q Consensus        83 ~v~d~~~~~s~~~~~~~~~~~i~~~~-~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~  161 (197)
                      +|||++++.+++.+ ..|+..+.... ++.|+++|+||+|+.+.+.          +..+++..++..++. +++++||+
T Consensus       111 ~v~d~~~~~s~~~~-~~~~~~i~~~~~~~~p~ilv~nK~Dl~~~~~----------v~~~~~~~~~~~~~~-~~~~vSA~  178 (199)
T 3l0i_B          111 VVYDVTDQESFNNV-KQWLQEIDRYASENVNKLLVGNKCDLTTKKV----------VDYTTAKEFADSLGI-PFLETSAK  178 (199)
T ss_dssp             ECC-CCCSHHHHHH-HHHHHHHHSCC-CCSEEEEC-CCSSCC--CC----------CCSCC-CHHHHTTTC-CBCCCCC-
T ss_pred             EEEECCCHHHHHHH-HHHHHHHHHhccCCCCEEEEEECccCCcccc----------CCHHHHHHHHHHcCC-eEEEEECC
Confidence            99999999999998 78888887765 5899999999999976543          455667788888888 89999999


Q ss_pred             CCCCHHHHHHHHHHHHcCC
Q 036449          162 TQQNVKAVFDAAIRVVLQP  180 (197)
Q Consensus       162 ~~~~i~~l~~~i~~~~~~~  180 (197)
                      ++.|++++|++|.+.+...
T Consensus       179 ~g~gv~~l~~~l~~~l~~~  197 (199)
T 3l0i_B          179 NATNVEQSFMTMAAEIKKR  197 (199)
T ss_dssp             --HHHHHHHHHHTTTTTTT
T ss_pred             CCCCHHHHHHHHHHHHHHh
Confidence            9999999999998877654

>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}

Probab=100.00  E-value=8.2e-33  Score=194.86  Aligned_cols=167  Identities=16%  Similarity=0.155  Sum_probs=124.8

Q ss_pred             CCceeEEEEEcCCCCCHHHHHHHHhhCCCCC-CCCCceeeeeeEEEEECCeEEEEEEEeCCCccccccccccCcCCCcEE
Q 036449            3 ASRFIKCVTVGDGAVGKTCLLISYTSNTFPT-DYVPTVFDNFSANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVF   81 (197)
Q Consensus         3 ~~~~~~i~v~G~~~~GKstli~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~   81 (197)
                      +...++|+|+|.+|||||||+++|..+.+.. .+.+|.+.... .+.  ...+.+.+||+||++.+...+..++.++|++
T Consensus        14 ~~~~~ki~v~G~~~~GKSsl~~~l~~~~~~~~~~~~t~~~~~~-~~~--~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~i   90 (199)
T 4bas_A           14 SKTKLQVVMCGLDNSGKTTIINQVKPAQSSSKHITATVGYNVE-TFE--KGRVAFTVFDMGGAKKFRGLWETYYDNIDAV   90 (199)
T ss_dssp             --CEEEEEEECCTTSCHHHHHHHHSCCC----CCCCCSSEEEE-EEE--ETTEEEEEEEECCSGGGGGGGGGGCTTCSEE
T ss_pred             CCCCcEEEEECCCCCCHHHHHHHHhcCCCcccccccccceeEE-EEE--eCCEEEEEEECCCCHhHHHHHHHHHhcCCEE
Confidence            3567999999999999999999999999887 77777763322 233  3347888999999999999999999999999


Q ss_pred             EEEEeCCCchhHHHHHHHHHHHHhhhC---------CCCCEEEEeeCCcccCCcccccCCCCCCcccHHHHHH-HHHHhC
Q 036449           82 ILAFSLISKASYENVSKKWIPELKHYA---------PGVPIILVGTKLDLRDDKQFFIDHPGAVPISTAQGEE-LRKLIG  151 (197)
Q Consensus        82 i~v~d~~~~~s~~~~~~~~~~~i~~~~---------~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~  151 (197)
                      |+|||+++++++..+ ..|+..+....         ++.|+++|+||+|+.....       ...+....... +++..+
T Consensus        91 i~v~D~~~~~s~~~~-~~~~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~-------~~~~~~~~~~~~~~~~~~  162 (199)
T 4bas_A           91 IFVVDSSDHLRLCVV-KSEIQAMLKHEDIRRELPGGGRVPFLFFANKMDAAGAKT-------AAELVEILDLTTLMGDHP  162 (199)
T ss_dssp             EEEEETTCGGGHHHH-HHHHHHHHTSHHHHSBCTTSCBCCEEEEEECTTSTTCCC-------HHHHHHHHTHHHHHTTSC
T ss_pred             EEEEECCcHHHHHHH-HHHHHHHHhChhhhhcccccCCCCEEEEEECcCCCCCCC-------HHHHHHHhcchhhccCCe
Confidence            999999999999998 55555544331         2799999999999976421       00011111111 113355


Q ss_pred             CCceEEeccCCCCCHHHHHHHHHHHHcCCC
Q 036449          152 APAYIECSSKTQQNVKAVFDAAIRVVLQPP  181 (197)
Q Consensus       152 ~~~~~~~sa~~~~~i~~l~~~i~~~~~~~~  181 (197)
                      . +++++||+++.|++++|++|.+.+....
T Consensus       163 ~-~~~~~Sa~~g~gv~~l~~~l~~~~~~~~  191 (199)
T 4bas_A          163 F-VIFASNGLKGTGVHEGFSWLQETASRQS  191 (199)
T ss_dssp             E-EEEECBTTTTBTHHHHHHHHHHHHHHHC
T ss_pred             e-EEEEeeCCCccCHHHHHHHHHHHHHHHh
Confidence            5 8999999999999999999999887653

>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ...

Probab=100.00  E-value=3.8e-33  Score=199.91  Aligned_cols=165  Identities=30%  Similarity=0.488  Sum_probs=140.8

Q ss_pred             CceeEEEEEcCCCCCHHHHHHHHhhCCCCCCCCCcee-eeeeEEEEECCeEEEEEEEeCCCccccccccccCcCCCcEEE
Q 036449            4 SRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVF-DNFSANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFI   82 (197)
Q Consensus         4 ~~~~~i~v~G~~~~GKstli~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i   82 (197)
                      .+.+||+++|.+|||||||+++++.+.+...+.++.+ ........+++..+.+.+||+||++.+...+..++.++|++|
T Consensus        13 ~~~~ki~v~G~~~~GKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i   92 (221)
T 3gj0_A           13 QVQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQEKFGGLRDGYYIQAQCAI   92 (221)
T ss_dssp             CCEEEEEEEECTTSSHHHHHTTBHHHHHTCEEETTTTEEEEEEEEEETTEEEEEEEEEECSGGGTSCCCHHHHTTCCEEE
T ss_pred             ccceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCChHHHhHHHHHHHhcCCEEE
Confidence            4669999999999999999999887776666666664 344555667888899999999999999999999999999999


Q ss_pred             EEEeCCCchhHHHHHHHHHHHHhhhCCCCCEEEEeeCCcccCCcccccCCCCCCcccHHHHHHHHHHhCCCceEEeccCC
Q 036449           83 LAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPISTAQGEELRKLIGAPAYIECSSKT  162 (197)
Q Consensus        83 ~v~d~~~~~s~~~~~~~~~~~i~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~  162 (197)
                      +|||++++.+++.+ ..|+..+....++.|+++|+||+|+.+...            ..+...+++..+. +++++||++
T Consensus        93 ~v~d~~~~~s~~~~-~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~------------~~~~~~~~~~~~~-~~~~~Sa~~  158 (221)
T 3gj0_A           93 IMFDVTSRVTYKNV-PNWHRDLVRVCENIPIVLCGNKVDIKDRKV------------KAKSIVFHRKKNL-QYYDISAKS  158 (221)
T ss_dssp             EEEETTCHHHHHTH-HHHHHHHHHHSTTCCEEEEEECTTSSSCSS------------CGGGCCHHHHHTC-EEEECBGGG
T ss_pred             EEEECCCHHHHHHH-HHHHHHHHHhCCCCCEEEEEECCccccccc------------cHHHHHHHHHcCC-EEEEEeCCC
Confidence            99999999999998 789999988888999999999999975432            1244567777887 899999999


Q ss_pred             CCCHHHHHHHHHHHHcCCCc
Q 036449          163 QQNVKAVFDAAIRVVLQPPK  182 (197)
Q Consensus       163 ~~~i~~l~~~i~~~~~~~~~  182 (197)
                      |.|++++|++|.+.+...+.
T Consensus       159 ~~gi~~l~~~l~~~l~~~~~  178 (221)
T 3gj0_A          159 NYNFEKPFLWLARKLIGDPN  178 (221)
T ss_dssp             TBTTTHHHHHHHHHHHTCTT
T ss_pred             CCCHHHHHHHHHHHHHhCcc
Confidence            99999999999999877643

>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens}

Probab=100.00  E-value=2.3e-35  Score=208.95  Aligned_cols=174  Identities=64%  Similarity=1.075  Sum_probs=145.7

Q ss_pred             CceeEEEEEcCCCCCHHHHHHHHhhCCCCCCCCCceeeeeeEEEEECCeEEEEEEEeCCCccccccccccCcCCCcEEEE
Q 036449            4 SRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFIL   83 (197)
Q Consensus         4 ~~~~~i~v~G~~~~GKstli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~   83 (197)
                      .+.++|+++|.+|+|||||++++..+.+...+.++....+...+.+++..+.+++||+||++++...+..++.++|++++
T Consensus        28 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~iil  107 (204)
T 3th5_A           28 GQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFLI  107 (204)
Confidence            57799999999999999999999999888888888877777677777778889999999999999999999999999999


Q ss_pred             EEeCCCchhHHHHHHHHHHHHhhhCCCCCEEEEeeCCcccCCccccc--CCCCCCcccHHHHHHHHHHhCCCceEEeccC
Q 036449           84 AFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLRDDKQFFI--DHPGAVPISTAQGEELRKLIGAPAYIECSSK  161 (197)
Q Consensus        84 v~d~~~~~s~~~~~~~~~~~i~~~~~~~~~ivv~nK~D~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~  161 (197)
                      |||++++.+++.+...|+..+....++.|+++|+||+|+.+......  .......+..+++..+++..+..+++++||+
T Consensus       108 v~D~~~~~s~~~~~~~~~~~l~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~vSA~  187 (204)
T 3th5_A          108 CFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSAL  187 (204)
Confidence            99999999999985588888887777899999999999976431100  0001123556777888888886579999999


Q ss_pred             CCCCHHHHHHHHHHHH
Q 036449          162 TQQNVKAVFDAAIRVV  177 (197)
Q Consensus       162 ~~~~i~~l~~~i~~~~  177 (197)
                      +|.|++++|++|.+.+
T Consensus       188 ~g~gi~~l~~~l~~~i  203 (204)
T 3th5_A          188 TQRGLKTVFDEAIRAV  203 (204)
Confidence            9999999999998765

>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*

Probab=99.98  E-value=2.9e-31  Score=182.56  Aligned_cols=164  Identities=13%  Similarity=0.173  Sum_probs=123.4

Q ss_pred             CceeEEEEEcCCCCCHHHHHHHHhhCCCCCCCCCceeeeeeEEEEECCeEEEEEEEeCCCccccccccccCcCCCcEEEE
Q 036449            4 SRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFIL   83 (197)
Q Consensus         4 ~~~~~i~v~G~~~~GKstli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~   83 (197)
                      ++.++|+++|.+|+|||||++++..+.+.. +.+|.+. ....+.+++  +.+.+||+||++.+...+..++.++|++++
T Consensus         5 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~~-~~~t~~~-~~~~~~~~~--~~~~~~Dt~G~~~~~~~~~~~~~~~d~ii~   80 (171)
T 1upt_A            5 TREMRILILGLDGAGKTTILYRLQVGEVVT-TIPTIGF-NVETVTYKN--LKFQVWDLGGLTSIRPYWRCYYSNTDAVIY   80 (171)
T ss_dssp             SSCEEEEEECSTTSSHHHHHHHHHHSSCCC-CCCCSSE-EEEEEEETT--EEEEEEEECCCGGGGGGGGGGCTTCSEEEE
T ss_pred             CCccEEEEECCCCCCHHHHHHHHhcCCCCC-cCCcCcc-ceEEEEECC--EEEEEEECCCChhhhHHHHHHhccCCEEEE
Confidence            457999999999999999999999888754 4555542 233444554  678899999999999999999999999999


Q ss_pred             EEeCCCchhHHHHHHHHHHHHhhh-C-CCCCEEEEeeCCcccCCcccccCCCCCCcccHHHHHHHHHHhCCCceEEeccC
Q 036449           84 AFSLISKASYENVSKKWIPELKHY-A-PGVPIILVGTKLDLRDDKQFFIDHPGAVPISTAQGEELRKLIGAPAYIECSSK  161 (197)
Q Consensus        84 v~d~~~~~s~~~~~~~~~~~i~~~-~-~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~  161 (197)
                      |||++++.++... ..|+..+... . ++.|+++|+||+|+.+...       ...+.......++...+. +++++||+
T Consensus        81 v~d~~~~~s~~~~-~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~-------~~~~~~~~~~~~~~~~~~-~~~~~Sa~  151 (171)
T 1upt_A           81 VVDSCDRDRIGIS-KSELVAMLEEEELRKAILVVFANKQDMEQAMT-------SSEMANSLGLPALKDRKW-QIFKTSAT  151 (171)
T ss_dssp             EEETTCCTTHHHH-HHHHHHHHTCGGGTTCEEEEEEECTTSTTCCC-------HHHHHHHHTGGGCTTSCE-EEEECCTT
T ss_pred             EEECCCHHHHHHH-HHHHHHHHhchhhCCCEEEEEEECCCCcCCCC-------HHHHHHHhCchhccCCce-EEEECcCC
Confidence            9999999999988 4555444332 2 6899999999999976421       000111111112223344 79999999


Q ss_pred             CCCCHHHHHHHHHHHHcCC
Q 036449          162 TQQNVKAVFDAAIRVVLQP  180 (197)
Q Consensus       162 ~~~~i~~l~~~i~~~~~~~  180 (197)
                      ++.|++++|++|.+.+.++
T Consensus       152 ~~~gi~~l~~~l~~~i~~~  170 (171)
T 1upt_A          152 KGTGLDEAMEWLVETLKSR  170 (171)
T ss_dssp             TCTTHHHHHHHHHHHHHTC
T ss_pred             CCcCHHHHHHHHHHHHhhc
Confidence            9999999999999988654

>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*

Probab=99.98  E-value=5.3e-31  Score=184.58  Aligned_cols=156  Identities=17%  Similarity=0.261  Sum_probs=121.9

Q ss_pred             CceeEEEEEcCCCCCHHHHHHHHhhCCCCCCCCCceeeeeeEEEEECCeEEEEEEEeCCCccccccccccCcCCCcEEEE
Q 036449            4 SRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFIL   83 (197)
Q Consensus         4 ~~~~~i~v~G~~~~GKstli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~   83 (197)
                      .+.++|+++|++|||||||++++.++.+. .+.+|.+.. ...+.+++  +.+.+||+||++.+...+..++.++|++++
T Consensus        21 ~~~~ki~~vG~~~vGKSsli~~l~~~~~~-~~~~t~~~~-~~~~~~~~--~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~   96 (190)
T 1m2o_B           21 NKHGKLLFLGLDNAGKTTLLHMLKNDRLA-TLQPTWHPT-SEELAIGN--IKFTTFDLGGHIQARRLWKDYFPEVNGIVF   96 (190)
T ss_dssp             ---CEEEEEESTTSSHHHHHHHHHHSCCC-CCCCCCSCE-EEEEEETT--EEEEEEECCCSGGGTTSGGGGCTTCCEEEE
T ss_pred             CCccEEEEECCCCCCHHHHHHHHhcCCCC-ccccCCCCC-eEEEEECC--EEEEEEECCCCHHHHHHHHHHHhcCCEEEE
Confidence            35689999999999999999999998875 345555443 34555666  778899999999999999999999999999


Q ss_pred             EEeCCCchhHHHHHHHHHHHHhhh--CCCCCEEEEeeCCcccCCcccccCCCCCCcccHHHHHHHHHHh-----------
Q 036449           84 AFSLISKASYENVSKKWIPELKHY--APGVPIILVGTKLDLRDDKQFFIDHPGAVPISTAQGEELRKLI-----------  150 (197)
Q Consensus        84 v~d~~~~~s~~~~~~~~~~~i~~~--~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------  150 (197)
                      |||++++++++.+ ..|+..+...  .++.|+++|+||+|+.+.            ++.+++.+.....           
T Consensus        97 v~d~~~~~s~~~~-~~~~~~~~~~~~~~~~piilv~NK~Dl~~~------------~~~~~~~~~~~~~~~~~~~~~~~~  163 (190)
T 1m2o_B           97 LVDAADPERFDEA-RVELDALFNIAELKDVPFVILGNKIDAPNA------------VSEAELRSALGLLNTTGSQRIEGQ  163 (190)
T ss_dssp             EEETTCGGGHHHH-HHHHHHHHTCGGGTTCCEEEEEECTTSTTC------------CCHHHHHHHTTCSSCCC---CCSS
T ss_pred             EEECCChHHHHHH-HHHHHHHHcchhhcCCCEEEEEECCCCcCC------------CCHHHHHHHhCCcccccccccccc
Confidence            9999999999998 5666655432  268999999999999652            3344444443321           


Q ss_pred             CCCceEEeccCCCCCHHHHHHHHHHH
Q 036449          151 GAPAYIECSSKTQQNVKAVFDAAIRV  176 (197)
Q Consensus       151 ~~~~~~~~sa~~~~~i~~l~~~i~~~  176 (197)
                      ...+++++||++|.|++++|++|.+.
T Consensus       164 ~~~~~~~~Sa~~g~gi~~l~~~l~~~  189 (190)
T 1m2o_B          164 RPVEVFMCSVVMRNGYLEAFQWLSQY  189 (190)
T ss_dssp             CCEEEEECBTTTTBSHHHHHHHHHTT
T ss_pred             ceEEEEEeECCcCCCHHHHHHHHHhh
Confidence            12279999999999999999999764

>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*

Probab=99.98  E-value=1.7e-32  Score=191.89  Aligned_cols=160  Identities=21%  Similarity=0.290  Sum_probs=124.0

Q ss_pred             CceeEEEEEcCCCCCHHHHHHHHhhCCCCCCCCCceeeeeeEEEEECCeEEEEEEEeCCCccccccccccCcCCCcEEEE
Q 036449            4 SRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFIL   83 (197)
Q Consensus         4 ~~~~~i~v~G~~~~GKstli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~   83 (197)
                      .+.++|+++|.+|+|||||++++..+.+...+.+|.+..+.. +...  .+.+.+||+||++.+...+..++.++|++|+
T Consensus        20 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~-~~~~--~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~   96 (188)
T 1zd9_A           20 KEEMELTLVGLQYSGKTTFVNVIASGQFNEDMIPTVGFNMRK-ITKG--NVTIKLWDIGGQPRFRSMWERYCRGVSAIVY   96 (188)
T ss_dssp             CEEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEE-EEET--TEEEEEEEECCSHHHHTTHHHHHTTCSEEEE
T ss_pred             CCccEEEEECCCCCCHHHHHHHHHcCCCCCccCCCCceeEEE-EEeC--CEEEEEEECCCCHhHHHHHHHHHccCCEEEE
Confidence            467999999999999999999999998887777777655432 3333  4778899999999999999999999999999


Q ss_pred             EEeCCCchhHHHHHHHHHHHHhhh--CCCCCEEEEeeCCcccCCcccccCCCCCCcccHHHHHH-H----HHHhCCCceE
Q 036449           84 AFSLISKASYENVSKKWIPELKHY--APGVPIILVGTKLDLRDDKQFFIDHPGAVPISTAQGEE-L----RKLIGAPAYI  156 (197)
Q Consensus        84 v~d~~~~~s~~~~~~~~~~~i~~~--~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~-~----~~~~~~~~~~  156 (197)
                      |||++++++++.+ ..|+..+...  .++.|+++|+||+|+.....            .++... +    +...+. +++
T Consensus        97 v~D~~~~~s~~~~-~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~------------~~~~~~~~~~~~~~~~~~-~~~  162 (188)
T 1zd9_A           97 MVDAADQEKIEAS-KNELHNLLDKPQLQGIPVLVLGNKRDLPGALD------------EKELIEKMNLSAIQDREI-CCY  162 (188)
T ss_dssp             EEETTCGGGHHHH-HHHHHHHHTCGGGTTCCEEEEEECTTSTTCCC------------HHHHHHHTTGGGCCSSCE-EEE
T ss_pred             EEECCCHHHHHHH-HHHHHHHHhCcccCCCCEEEEEECCCCccCCC------------HHHHHHHhChhhhccCCe-eEE
Confidence            9999999999998 5555555432  26899999999999965321            111111 1    111233 689


Q ss_pred             EeccCCCCCHHHHHHHHHHHHcCC
Q 036449          157 ECSSKTQQNVKAVFDAAIRVVLQP  180 (197)
Q Consensus       157 ~~sa~~~~~i~~l~~~i~~~~~~~  180 (197)
                      ++||++|.|++++|++|.+.+...
T Consensus       163 ~~SA~~g~gv~~l~~~l~~~~~~~  186 (188)
T 1zd9_A          163 SISCKEKDNIDITLQWLIQHSKSR  186 (188)
T ss_dssp             ECCTTTCTTHHHHHHHHHHTCC--
T ss_pred             EEECCCCCCHHHHHHHHHHHHHhh
Confidence            999999999999999999877654

>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*

Probab=99.98  E-value=2.4e-31  Score=187.54  Aligned_cols=157  Identities=20%  Similarity=0.261  Sum_probs=118.2

Q ss_pred             CceeEEEEEcCCCCCHHHHHHHHhhCCCCCCCCCceeeeeeEEEEECCeEEEEEEEeCCCccccccccccCcCCCcEEEE
Q 036449            4 SRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFIL   83 (197)
Q Consensus         4 ~~~~~i~v~G~~~~GKstli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~   83 (197)
                      .+.++|+++|++|||||||++++.++.+. .+.+|.+.. ...+.+++  +.+++|||||++.++..+..++.++|++++
T Consensus        23 ~~~~ki~lvG~~~vGKSsLi~~l~~~~~~-~~~~t~~~~-~~~~~~~~--~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~   98 (198)
T 1f6b_A           23 KKTGKLVFLGLDNAGKTTLLHMLKDDRLG-QHVPTLHPT-SEELTIAG--MTFTTFDLGGHIQARRVWKNYLPAINGIVF   98 (198)
T ss_dssp             TCCEEEEEEEETTSSHHHHHHHHSCC-------CCCCCS-CEEEEETT--EEEEEEEECC----CCGGGGGGGGCSEEEE
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHhcCCCC-ccCCCCCce-eEEEEECC--EEEEEEECCCcHhhHHHHHHHHhcCCEEEE
Confidence            35689999999999999999999988764 345555443 34555666  778899999999999999999999999999


Q ss_pred             EEeCCCchhHHHHHHHHHHHHhhh--CCCCCEEEEeeCCcccCCcccccCCCCCCcccHHHHHHHHHHh-----------
Q 036449           84 AFSLISKASYENVSKKWIPELKHY--APGVPIILVGTKLDLRDDKQFFIDHPGAVPISTAQGEELRKLI-----------  150 (197)
Q Consensus        84 v~d~~~~~s~~~~~~~~~~~i~~~--~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------  150 (197)
                      |||++++++++.+ ..|+..+...  .++.|+++|+||+|+.+.            ++.+++.++....           
T Consensus        99 v~D~~~~~s~~~~-~~~~~~~~~~~~~~~~piilv~NK~Dl~~~------------~~~~~~~~~~~~~~~~~~~~~~~~  165 (198)
T 1f6b_A           99 LVDCADHERLLES-KEELDSLMTDETIANVPILILGNKIDRPEA------------ISEERLREMFGLYGQTTGKGSVSL  165 (198)
T ss_dssp             EEETTCGGGHHHH-HHHHHHHHTCGGGTTSCEEEEEECTTSTTC------------CCHHHHHHHHTCTTTCCCSSCCCT
T ss_pred             EEECCCHHHHHHH-HHHHHHHHhCcccCCCcEEEEEECCCcccc------------CCHHHHHHHhCccccccccccccc
Confidence            9999999999998 5666665543  258999999999999652            3455666655422           


Q ss_pred             -----CCCceEEeccCCCCCHHHHHHHHHHHH
Q 036449          151 -----GAPAYIECSSKTQQNVKAVFDAAIRVV  177 (197)
Q Consensus       151 -----~~~~~~~~sa~~~~~i~~l~~~i~~~~  177 (197)
                           ...+++++||++|.|++++|++|.+.+
T Consensus       166 ~~~~~~~~~~~~~SA~~g~gv~~l~~~l~~~l  197 (198)
T 1f6b_A          166 KELNARPLEVFMCSVLKRQGYGEGFRWMAQYI  197 (198)
T ss_dssp             TTCCSCCEEEEECBTTTTBSHHHHHHHHHTTC
T ss_pred             ccccCceEEEEEEECCCCCCHHHHHHHHHHhc
Confidence                 223799999999999999999998653

>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...

Probab=99.98  E-value=4.6e-32  Score=185.41  Aligned_cols=160  Identities=15%  Similarity=0.188  Sum_probs=117.8

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhhCCCCCCCCCceeeeeeEEEEECCeEEEEEEEeCCCccccccccccCcCCCcEEEEEEe
Q 036449            7 IKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFS   86 (197)
Q Consensus         7 ~~i~v~G~~~~GKstli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d   86 (197)
                      +||+++|.+|+|||||++++..+.+.. +.||.+. ....+...  .+.+.+||+||++.+...+..++.++|++++|||
T Consensus         1 ~ki~~~G~~~~GKssl~~~l~~~~~~~-~~~t~~~-~~~~~~~~--~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d   76 (164)
T 1r8s_A            1 MRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGF-NVETVEYK--NISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVD   76 (164)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHHCSSC-CCCCSSC-CEEEEECS--SCEEEEEECCCCGGGHHHHHHHTTTCSEEEEEEE
T ss_pred             CEEEEECCCCCCHHHHHHHHHcCCcCc-ccCcCce-eEEEEEEC--CEEEEEEEcCCChhhHHHHHHHhccCCEEEEEEE
Confidence            589999999999999999999887764 4555542 22233333  3778899999999999998889999999999999


Q ss_pred             CCCchhHHHHHHHHHHHHhhh--CCCCCEEEEeeCCcccCCcccccCCCCCCcccHHHHHHHHHHhCCCceEEeccCCCC
Q 036449           87 LISKASYENVSKKWIPELKHY--APGVPIILVGTKLDLRDDKQFFIDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQQ  164 (197)
Q Consensus        87 ~~~~~s~~~~~~~~~~~i~~~--~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~  164 (197)
                      ++++++++.+ ..|+..+...  .++.|+++|+||+|+.+...       ...+........+...+. +++++||++|.
T Consensus        77 ~~~~~s~~~~-~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~-------~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~  147 (164)
T 1r8s_A           77 SNDRERVNEA-REELMRMLAEDELRDAVLLVFANKQDLPNAMN-------AAEITDKLGLHSLRHRNW-YIQATCATSGD  147 (164)
T ss_dssp             TTCGGGHHHH-HHHHHHHHTCGGGTTCEEEEEEECTTSTTCCC-------HHHHHHHTTGGGCSSCCE-EEEECBTTTTB
T ss_pred             CCCHHHHHHH-HHHHHHHHhchhhcCCeEEEEEECcCCcCCCC-------HHHHHHHhCcccccCccE-EEEEcccCCCc
Confidence            9999999988 5666555442  26899999999999965321       000111111111111233 68999999999


Q ss_pred             CHHHHHHHHHHHHcC
Q 036449          165 NVKAVFDAAIRVVLQ  179 (197)
Q Consensus       165 ~i~~l~~~i~~~~~~  179 (197)
                      |++++|++|.+.+.+
T Consensus       148 gi~~l~~~l~~~i~~  162 (164)
T 1r8s_A          148 GLYEGLDWLSNQLRN  162 (164)
T ss_dssp             THHHHHHHHHHHC--
T ss_pred             CHHHHHHHHHHHHhh
Confidence            999999999988754

>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*

Probab=99.98  E-value=9e-31  Score=182.63  Aligned_cols=159  Identities=17%  Similarity=0.235  Sum_probs=124.4

Q ss_pred             CceeEEEEEcCCCCCHHHHHHHHhhCCCCCCCCCceeeeeeEEEEECCeEEEEEEEeCCCccccccccccCcCCCcEEEE
Q 036449            4 SRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFIL   83 (197)
Q Consensus         4 ~~~~~i~v~G~~~~GKstli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~   83 (197)
                      .+.++|+++|.+|+|||||++++.++. ...+.+|.+.. ...+.+++  +.+++||+||++.+...+..++.++|++++
T Consensus        16 ~~~~~i~v~G~~~~GKssl~~~l~~~~-~~~~~~t~~~~-~~~~~~~~--~~~~~~Dt~G~~~~~~~~~~~~~~~d~ii~   91 (186)
T 1ksh_A           16 ERELRLLMLGLDNAGKTTILKKFNGED-VDTISPTLGFN-IKTLEHRG--FKLNIWDVGGQKSLRSYWRNYFESTDGLIW   91 (186)
T ss_dssp             -CCEEEEEECSTTSSHHHHHHHHTTCC-CSSCCCCSSEE-EEEEEETT--EEEEEEEECCSHHHHTTGGGGCTTCSEEEE
T ss_pred             CCeeEEEEECCCCCCHHHHHHHHhcCC-CCcccccCccc-eEEEEECC--EEEEEEECCCCHhHHHHHHHHhcCCCEEEE
Confidence            577999999999999999999999887 56666666533 33444554  678899999999999999999999999999


Q ss_pred             EEeCCCchhHHHHHHHHHHHHhhh--CCCCCEEEEeeCCcccCCcccccCCCCCCcccHHHHHHHHH-----HhCCCceE
Q 036449           84 AFSLISKASYENVSKKWIPELKHY--APGVPIILVGTKLDLRDDKQFFIDHPGAVPISTAQGEELRK-----LIGAPAYI  156 (197)
Q Consensus        84 v~d~~~~~s~~~~~~~~~~~i~~~--~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~  156 (197)
                      |||++++.+++.+ ..|+..+...  .++.|+++|+||+|+.+...            .++..+...     ..+. +++
T Consensus        92 v~d~~~~~s~~~~-~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~------------~~~~~~~~~~~~~~~~~~-~~~  157 (186)
T 1ksh_A           92 VVDSADRQRMQDC-QRELQSLLVEERLAGATLLIFANKQDLPGALS------------CNAIQEALELDSIRSHHW-RIQ  157 (186)
T ss_dssp             EEETTCGGGHHHH-HHHHHHHHTCGGGTTCEEEEEEECTTSTTCCC------------HHHHHHHTTGGGCCSSCE-EEE
T ss_pred             EEECcCHHHHHHH-HHHHHHHHhChhcCCCcEEEEEeCccCCCCCC------------HHHHHHHhChhhccCCce-EEE
Confidence            9999999999988 5555555433  26899999999999966421            222222111     2333 799


Q ss_pred             EeccCCCCCHHHHHHHHHHHHcCC
Q 036449          157 ECSSKTQQNVKAVFDAAIRVVLQP  180 (197)
Q Consensus       157 ~~sa~~~~~i~~l~~~i~~~~~~~  180 (197)
                      ++||+++.|++++|++|.+.+.++
T Consensus       158 ~~Sa~~~~gi~~l~~~l~~~i~~~  181 (186)
T 1ksh_A          158 GCSAVTGEDLLPGIDWLLDDISSR  181 (186)
T ss_dssp             ECCTTTCTTHHHHHHHHHHHHHTC
T ss_pred             EeeCCCCCCHHHHHHHHHHHHHhc
Confidence            999999999999999999988654

>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}

Probab=99.98  E-value=4.1e-31  Score=185.04  Aligned_cols=159  Identities=16%  Similarity=0.224  Sum_probs=123.7

Q ss_pred             CceeEEEEEcCCCCCHHHHHHHHhhCC-CCCCCCCceeeeeeEEEEECCeEEEEEEEeCCCccccccccccCcCCCcEEE
Q 036449            4 SRFIKCVTVGDGAVGKTCLLISYTSNT-FPTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFI   82 (197)
Q Consensus         4 ~~~~~i~v~G~~~~GKstli~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i   82 (197)
                      .+.++|+++|.+|+|||||++++.+.. +...+.+|.+ .....+.+++  +.+.+||+||++.+...+..++.++|++|
T Consensus        19 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~t~~-~~~~~~~~~~--~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii   95 (190)
T 2h57_A           19 SKEVHVLCLGLDNSGKTTIINKLKPSNAQSQNILPTIG-FSIEKFKSSS--LSFTVFDMSGQGRYRNLWEHYYKEGQAII   95 (190)
T ss_dssp             --CEEEEEEECTTSSHHHHHHHTSCGGGCCSSCCCCSS-EEEEEEECSS--CEEEEEEECCSTTTGGGGGGGGGGCSEEE
T ss_pred             CCccEEEEECCCCCCHHHHHHHHhcCCCCCCCcCCccc-eeEEEEEECC--EEEEEEECCCCHHHHHHHHHHHhcCCEEE
Confidence            467999999999999999999999877 5555666665 3334445554  67889999999999999999999999999


Q ss_pred             EEEeCCCchhHHHHHHHHHHHHhhhC----CCCCEEEEeeCCcccCCcccccCCCCCCcccHHHHHHHHH--H---hCCC
Q 036449           83 LAFSLISKASYENVSKKWIPELKHYA----PGVPIILVGTKLDLRDDKQFFIDHPGAVPISTAQGEELRK--L---IGAP  153 (197)
Q Consensus        83 ~v~d~~~~~s~~~~~~~~~~~i~~~~----~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~--~---~~~~  153 (197)
                      +|||++++.+++.+ ..|+..+....    ++.|+++|+||+|+.+.            ...++..++..  .   .+. 
T Consensus        96 ~v~d~~~~~s~~~~-~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~------------~~~~~~~~~~~~~~~~~~~~-  161 (190)
T 2h57_A           96 FVIDSSDRLRMVVA-KEELDTLLNHPDIKHRRIPILFFANKMDLRDA------------VTSVKVSQLLCLENIKDKPW-  161 (190)
T ss_dssp             EEEETTCHHHHHHH-HHHHHHHHHSTTTTTSCCCEEEEEECTTSTTC------------CCHHHHHHHHTGGGCCSSCE-
T ss_pred             EEEECCCHHHHHHH-HHHHHHHHhChhhccCCCeEEEEEeCcCcccC------------CCHHHHHHHhChhhccCCce-
Confidence            99999999999988 55655554432    48999999999999653            23344444442  1   233 


Q ss_pred             ceEEeccCCCCCHHHHHHHHHHHHcC
Q 036449          154 AYIECSSKTQQNVKAVFDAAIRVVLQ  179 (197)
Q Consensus       154 ~~~~~sa~~~~~i~~l~~~i~~~~~~  179 (197)
                      +++++||+++.|++++|++|.+.+.+
T Consensus       162 ~~~~~Sa~~~~gi~~l~~~l~~~i~~  187 (190)
T 2h57_A          162 HICASDAIKGEGLQEGVDWLQDQIQT  187 (190)
T ss_dssp             EEEECBTTTTBTHHHHHHHHHHHC--
T ss_pred             EEEEccCCCCcCHHHHHHHHHHHHHH
Confidence            79999999999999999999988754

>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8

Probab=99.98  E-value=5.2e-31  Score=184.08  Aligned_cols=164  Identities=15%  Similarity=0.204  Sum_probs=122.3

Q ss_pred             CCceeEEEEEcCCCCCHHHHHHHHhhCCCCCCCCCceeeeeeEEEEECCeEEEEEEEeCCCccccccccccCcCCCcEEE
Q 036449            3 ASRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFI   82 (197)
Q Consensus         3 ~~~~~~i~v~G~~~~GKstli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i   82 (197)
                      ..+.++|+++|.+|||||||++++..+.+. .+.+|.+. ....+.+++  +.+++||+||++++...+..++.++|++|
T Consensus        13 ~~~~~~i~v~G~~~~GKssl~~~l~~~~~~-~~~~t~~~-~~~~~~~~~--~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii   88 (187)
T 1zj6_A           13 NHQEHKVIIVGLDNAGKTTILYQFSMNEVV-HTSPTIGS-NVEEIVINN--TRFLMWDIGGQESLRSSWNTYYTNTEFVI   88 (187)
T ss_dssp             TTSCEEEEEEESTTSSHHHHHHHHHTTSCE-EEECCSCS-SCEEEEETT--EEEEEEECCC----CGGGHHHHTTCCEEE
T ss_pred             CCCccEEEEECCCCCCHHHHHHHHhcCCCC-cCcCCCcc-ceEEEEECC--EEEEEEECCCCHhHHHHHHHHhcCCCEEE
Confidence            356799999999999999999999988776 44555542 233444555  77889999999999999999999999999


Q ss_pred             EEEeCCCchhHHHHHHHHHHHHhhh--CCCCCEEEEeeCCcccCCcccccCCCCCCcccHHHHHHHHH-----HhCCCce
Q 036449           83 LAFSLISKASYENVSKKWIPELKHY--APGVPIILVGTKLDLRDDKQFFIDHPGAVPISTAQGEELRK-----LIGAPAY  155 (197)
Q Consensus        83 ~v~d~~~~~s~~~~~~~~~~~i~~~--~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~  155 (197)
                      +|+|++++++++.+ ..|+..+...  .++.|+++|+||+|+.+..            ..++..+...     ..+. ++
T Consensus        89 ~v~d~~~~~s~~~~-~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~------------~~~~i~~~~~~~~~~~~~~-~~  154 (187)
T 1zj6_A           89 VVVDSTDRERISVT-REELYKMLAHEDLRKAGLLIFANKQDVKECM------------TVAEISQFLKLTSIKDHQW-HI  154 (187)
T ss_dssp             EEEETTCTTTHHHH-HHHHHHHHTSGGGTTCEEEEEEECTTSTTCC------------CHHHHHHHHTGGGCCSSCE-EE
T ss_pred             EEEeCCCHHHHHHH-HHHHHHHHhchhhCCCeEEEEEECCCCcCCC------------CHHHHHHHhChhhhcCCCc-EE
Confidence            99999999999998 5666666544  2589999999999996532            2333333222     2344 79


Q ss_pred             EEeccCCCCCHHHHHHHHHHHHcCCCchh
Q 036449          156 IECSSKTQQNVKAVFDAAIRVVLQPPKTK  184 (197)
Q Consensus       156 ~~~sa~~~~~i~~l~~~i~~~~~~~~~~~  184 (197)
                      +++||++|.|++++|++|.+.+.......
T Consensus       155 ~~~Sa~~g~gi~~l~~~l~~~~~~~~~~~  183 (187)
T 1zj6_A          155 QACCALTGEGLCQGLEWMMSRLKIRLEHH  183 (187)
T ss_dssp             EECBTTTTBTHHHHHHHHHHHHCC-----
T ss_pred             EEccCCCCcCHHHHHHHHHHHHHHHhhhh
Confidence            99999999999999999999987765443

>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*

Probab=99.97  E-value=5.1e-32  Score=190.10  Aligned_cols=164  Identities=13%  Similarity=0.167  Sum_probs=116.5

Q ss_pred             CCceeEEEEEcCCCCCHHHHHHHHhhCCCCCCCCCceeeeeeEEEEECCeEEEEEEEeCCCccccccccccCcCCCcEEE
Q 036449            3 ASRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFI   82 (197)
Q Consensus         3 ~~~~~~i~v~G~~~~GKstli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i   82 (197)
                      ..+.++|+++|.+|||||||++++..+.+.. +.||.+ .....+...+  +.+.+||+||++.+...+..++.++|++|
T Consensus        26 ~~~~~ki~v~G~~~vGKSsLi~~l~~~~~~~-~~~t~~-~~~~~~~~~~--~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii  101 (192)
T 2b6h_A           26 GKKQMRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIG-FNVETVEYKN--ICFTVWDVGGQDKIRPLWRHYFQNTQGLI  101 (192)
T ss_dssp             TTSCEEEEEEESTTSSHHHHHHHHCSSCCEE-EEEETT-EEEEEEEETT--EEEEEEECC-----CTTHHHHHHTCCEEE
T ss_pred             cCCccEEEEECCCCCCHHHHHHHHHhCCccc-cCCcCc-eeEEEEEECC--EEEEEEECCCCHhHHHHHHHHhccCCEEE
Confidence            4577999999999999999999999887653 344443 2223344444  77889999999999999989999999999


Q ss_pred             EEEeCCCchhHHHHHHHHHHHHhhhC--CCCCEEEEeeCCcccCCcccccCCCCCCcccHHHHHHHHHHhCCCceEEecc
Q 036449           83 LAFSLISKASYENVSKKWIPELKHYA--PGVPIILVGTKLDLRDDKQFFIDHPGAVPISTAQGEELRKLIGAPAYIECSS  160 (197)
Q Consensus        83 ~v~d~~~~~s~~~~~~~~~~~i~~~~--~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa  160 (197)
                      +|||++++++++.+ ..|+..+....  ++.|+++|+||+|+.+...       ...+.......++...+. +++++||
T Consensus       102 lv~D~~~~~s~~~~-~~~l~~~~~~~~~~~~piilv~NK~Dl~~~~~-------~~~i~~~~~~~~~~~~~~-~~~~~SA  172 (192)
T 2b6h_A          102 FVVDSNDRERVQES-ADELQKMLQEDELRDAVLLVFANKQDMPNAMP-------VSELTDKLGLQHLRSRTW-YVQATCA  172 (192)
T ss_dssp             EEEETTCGGGHHHH-HHHHHHHHTCGGGTTCEEEEEEECTTSTTCCC-------HHHHHHHTTGGGCSSCCE-EEEECBT
T ss_pred             EEEECCCHHHHHHH-HHHHHHHhcccccCCCeEEEEEECCCCCCCCC-------HHHHHHHhCcccccCCce-EEEECcC
Confidence            99999999999988 56666554432  5899999999999965321       000111111111112233 6899999


Q ss_pred             CCCCCHHHHHHHHHHHHcC
Q 036449          161 KTQQNVKAVFDAAIRVVLQ  179 (197)
Q Consensus       161 ~~~~~i~~l~~~i~~~~~~  179 (197)
                      ++|.|++++|++|.+.+.+
T Consensus       173 ~~g~gi~~l~~~l~~~i~~  191 (192)
T 2b6h_A          173 TQGTGLYDGLDWLSHELSK  191 (192)
T ss_dssp             TTTBTHHHHHHHHHHHTTT
T ss_pred             CCcCCHHHHHHHHHHHHhc
Confidence            9999999999999988754

>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*

Probab=99.97  E-value=1.4e-31  Score=188.46  Aligned_cols=166  Identities=15%  Similarity=0.212  Sum_probs=120.7

Q ss_pred             CCceeEEEEEcCCCCCHHHHHHHHhhCCCCCCCCCceeee---eeEEEEE-CCeEEEEEEEeCCCcccccccc---ccCc
Q 036449            3 ASRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDN---FSANVVV-NGSTVNLGLWDTAGQEDYNRLR---PLSY   75 (197)
Q Consensus         3 ~~~~~~i~v~G~~~~GKstli~~~~~~~~~~~~~~~~~~~---~~~~~~~-~~~~~~~~i~D~~G~~~~~~~~---~~~~   75 (197)
                      +++.+||+++|.+|||||||++++.+. +...  ++.+..   ......+ ++..+.+++||+||++.|....   ..++
T Consensus        17 ~~~~~ki~~vG~~~vGKTsLi~~l~~~-~~~~--~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~   93 (196)
T 3llu_A           17 QGSKPRILLMGLRRSGKSSIQKVVFHK-MSPN--ETLFLESTNKIYKDDISNSSFVNFQIWDFPGQMDFFDPTFDYEMIF   93 (196)
T ss_dssp             ---CCEEEEEESTTSSHHHHHHHHHSC-CCGG--GGGGCCCCCSCEEEEECCTTSCCEEEEECCSSCCTTCTTCCHHHHH
T ss_pred             cCcceEEEEECCCCCCHHHHHHHHHhc-CCCc--ceeeeccccceeeeeccCCCeeEEEEEECCCCHHHHhhhhhccccc
Confidence            356799999999999999999977664 3322  222111   1222223 2556789999999999987766   7899


Q ss_pred             CCCcEEEEEEeCCCc--hhHHHHHHHHHHHHhhhCCCCCEEEEeeCCcccCCcccccCCCCCCcccHHHHHHHHH----H
Q 036449           76 RGADVFILAFSLISK--ASYENVSKKWIPELKHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPISTAQGEELRK----L  149 (197)
Q Consensus        76 ~~~~~~i~v~d~~~~--~s~~~~~~~~~~~i~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~----~  149 (197)
                      .++|++|+|||++++  +++..+ ..|+..+....++.|+++|+||+|+.+.....   ...+.+..+++..+++    .
T Consensus        94 ~~~~~~i~v~d~~~~~~~~~~~~-~~~l~~~~~~~~~~piilv~nK~Dl~~~~~~~---~~~~~v~~~~~~~~~~~~~~~  169 (196)
T 3llu_A           94 RGTGALIYVIDAQDDYMEALTRL-HITVSKAYKVNPDMNFEVFIHKVDGLSDDHKI---ETQRDIHQRANDDLADAGLEK  169 (196)
T ss_dssp             HTCSEEEEEEETTSCCHHHHHHH-HHHHHHHHHHCTTCEEEEEEECGGGSCHHHHH---HHHHHHHHHHHHHHHHTTCTT
T ss_pred             ccCCEEEEEEECCCchHHHHHHH-HHHHHHHHhcCCCCcEEEEEeccccCchhhhh---HHHhHHHHHHHHHHHHhhhhc
Confidence            999999999999998  666666 56676665566799999999999986521100   0011245566777887    5


Q ss_pred             hCCCceEEeccCCCCCHHHHHHHHHHHH
Q 036449          150 IGAPAYIECSSKTQQNVKAVFDAAIRVV  177 (197)
Q Consensus       150 ~~~~~~~~~sa~~~~~i~~l~~~i~~~~  177 (197)
                      .+. +|+++||++ .|++++|+.+++.+
T Consensus       170 ~~~-~~~e~Sa~~-~~v~~~f~~l~~~l  195 (196)
T 3llu_A          170 LHL-SFYLTSIYD-HSIFEAFSKVVQKL  195 (196)
T ss_dssp             SCE-EEEEECTTS-THHHHHHHHHHHHT
T ss_pred             CCc-ceEEEEech-hhHHHHHHHHHHHh
Confidence            676 899999999 99999999999876

>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}

Probab=99.97  E-value=2.6e-31  Score=185.84  Aligned_cols=164  Identities=19%  Similarity=0.200  Sum_probs=122.2

Q ss_pred             CceeEEEEEcCCCCCHHHHHHHHhhCCCCCCCCCceeeeeeEEEEECCeEEEEEEEeCCCccccccccccCcCCCcEEEE
Q 036449            4 SRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFIL   83 (197)
Q Consensus         4 ~~~~~i~v~G~~~~GKstli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~   83 (197)
                      ++.++|+++|.+|+|||||++++..+.+.. +.+|.+ .....+..++  +.+.+|||||++.+...+..++.++|++++
T Consensus        20 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~-~~~t~~-~~~~~~~~~~--~~~~~~Dt~G~~~~~~~~~~~~~~~d~ii~   95 (189)
T 2x77_A           20 DRKIRVLMLGLDNAGKTSILYRLHLGDVVT-TVPTVG-VNLETLQYKN--ISFEVWDLGGQTGVRPYWRCYFSDTDAVIY   95 (189)
T ss_dssp             TSCEEEEEEEETTSSHHHHHHHTCCSCCEE-ECSSTT-CCEEEEEETT--EEEEEEEECCSSSSCCCCSSSSTTCCEEEE
T ss_pred             CCceEEEEECCCCCCHHHHHHHHHcCCCCC-cCCCCc-eEEEEEEECC--EEEEEEECCCCHhHHHHHHHHhhcCCEEEE
Confidence            578999999999999999999998877654 344544 2233344554  678899999999999999999999999999


Q ss_pred             EEeCCCchhHHHHHHHHHHHHhhh-C-CCCCEEEEeeCCcccCCcccccCCCCCCcccHHHHHHHHHHhCCCceEEeccC
Q 036449           84 AFSLISKASYENVSKKWIPELKHY-A-PGVPIILVGTKLDLRDDKQFFIDHPGAVPISTAQGEELRKLIGAPAYIECSSK  161 (197)
Q Consensus        84 v~d~~~~~s~~~~~~~~~~~i~~~-~-~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~  161 (197)
                      |+|++++++++.+ ..|+..+... . ++.|+++|+||+|+.+...       ...+........+...+. +++++||+
T Consensus        96 v~d~~~~~s~~~~-~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~-------~~~~~~~~~~~~~~~~~~-~~~~~Sa~  166 (189)
T 2x77_A           96 VVDSTDRDRMGVA-KHELYALLDEDELRKSLLLIFANKQDLPDAAS-------EAEIAEQLGVSSIMNRTW-TIVKSSSK  166 (189)
T ss_dssp             EEETTCCTTHHHH-HHHHHHHHTCSTTTTCEEEEEEECTTSTTCCC-------HHHHHHHTTGGGCCSSCE-EEEECCTT
T ss_pred             EEeCCCHHHHHHH-HHHHHHHHhhhhcCCCeEEEEEECCCCcCCCC-------HHHHHHHhChhhccCCce-EEEEccCC
Confidence            9999999999988 4555554433 2 5899999999999965421       000111111111122333 69999999


Q ss_pred             CCCCHHHHHHHHHHHHcCC
Q 036449          162 TQQNVKAVFDAAIRVVLQP  180 (197)
Q Consensus       162 ~~~~i~~l~~~i~~~~~~~  180 (197)
                      ++.|++++|++|.+.+.+.
T Consensus       167 ~~~gi~~l~~~l~~~i~~~  185 (189)
T 2x77_A          167 TGDGLVEGMDWLVERLREQ  185 (189)
T ss_dssp             TCTTHHHHHHHHHHHHHHT
T ss_pred             CccCHHHHHHHHHHHHHhc
Confidence            9999999999999987543

>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*

Probab=99.97  E-value=7.7e-32  Score=187.48  Aligned_cols=158  Identities=20%  Similarity=0.255  Sum_probs=119.3

Q ss_pred             CceeEEEEEcCCCCCHHHHHHHHhhCCCCCCCCCceeeeeeEEEEECCeEEEEEEEeCCCccccccccccCcCCCcEEEE
Q 036449            4 SRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFIL   83 (197)
Q Consensus         4 ~~~~~i~v~G~~~~GKstli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~   83 (197)
                      .+.++|+++|.+|||||||++++.+..+. .+.+|.+. ....+.+++  +.+++||+||++.+...+..++.++|++++
T Consensus        14 ~~~~ki~ivG~~~vGKSsL~~~l~~~~~~-~~~~t~g~-~~~~~~~~~--~~l~i~Dt~G~~~~~~~~~~~~~~~~~~i~   89 (181)
T 1fzq_A           14 DQEVRILLLGLDNAGKTTLLKQLASEDIS-HITPTQGF-NIKSVQSQG--FKLNVWDIGGQRKIRPYWRSYFENTDILIY   89 (181)
T ss_dssp             SSCEEEEEEESTTSSHHHHHHHHCCSCCE-EEEEETTE-EEEEEEETT--EEEEEEECSSCGGGHHHHHHHHTTCSEEEE
T ss_pred             CCceEEEEECCCCCCHHHHHHHHhcCCCC-cccCcCCe-EEEEEEECC--EEEEEEECCCCHHHHHHHHHHhCCCCEEEE
Confidence            56799999999999999999999987542 23444442 223444554  678899999999999998999999999999


Q ss_pred             EEeCCCchhHHHHHHHHHHHHhhh--CCCCCEEEEeeCCcccCCcccccCCCCCCcccHHHHHHHH-----HHhCCCceE
Q 036449           84 AFSLISKASYENVSKKWIPELKHY--APGVPIILVGTKLDLRDDKQFFIDHPGAVPISTAQGEELR-----KLIGAPAYI  156 (197)
Q Consensus        84 v~d~~~~~s~~~~~~~~~~~i~~~--~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~  156 (197)
                      |||++++++++.+ ..|+..+...  .++.|+++|+||+|+.+...            .++..+..     ...+. +++
T Consensus        90 v~d~~~~~s~~~~-~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~------------~~~~~~~~~~~~~~~~~~-~~~  155 (181)
T 1fzq_A           90 VIDSADRKRFEET-GQELTELLEEEKLSCVPVLIFANKQDLLTAAP------------ASEIAEGLNLHTIRDRVW-QIQ  155 (181)
T ss_dssp             EEETTCGGGHHHH-HHHHHHHTTCGGGTTCCEEEEEECTTSTTCCC------------HHHHHHHTTGGGCCSSCE-EEE
T ss_pred             EEECcCHHHHHHH-HHHHHHHHhChhhcCCCEEEEEECcCcccCCC------------HHHHHHHhCchhccCCce-EEE
Confidence            9999999999988 5666555432  25899999999999975431            12221111     11233 699


Q ss_pred             EeccCCCCCHHHHHHHHHHHHcC
Q 036449          157 ECSSKTQQNVKAVFDAAIRVVLQ  179 (197)
Q Consensus       157 ~~sa~~~~~i~~l~~~i~~~~~~  179 (197)
                      ++||++|.|++++|++|.+.+.+
T Consensus       156 ~~Sa~~g~gi~~l~~~l~~~~~~  178 (181)
T 1fzq_A          156 SCSALTGEGVQDGMNWVCKNVNA  178 (181)
T ss_dssp             ECCTTTCTTHHHHHHHHHHTC--
T ss_pred             EccCCCCCCHHHHHHHHHHHHHh
Confidence            99999999999999999987754

>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*

Probab=99.97  E-value=6.3e-31  Score=182.78  Aligned_cols=155  Identities=17%  Similarity=0.248  Sum_probs=119.1

Q ss_pred             CceeEEEEEcCCCCCHHHHHHHHhhCCCCCCCCCceeeeeeEEEEECCeEEEEEEEeCCCccccccccccCcCCCcEEEE
Q 036449            4 SRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFIL   83 (197)
Q Consensus         4 ~~~~~i~v~G~~~~GKstli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~   83 (197)
                      .+.++|+++|.+|+|||||++++..+.+ ..+.++.+.. ...+.+++  +.+.+||+||++.+...+..++.++|++++
T Consensus        19 ~~~~~i~v~G~~~~GKSsli~~l~~~~~-~~~~~t~~~~-~~~~~~~~--~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii~   94 (181)
T 2h17_A           19 SQEHKVIIVGLDNAGKTTILYQFSMNEV-VHTSPTIGSN-VEEIVINN--TRFLMWDIGGQESLRSSWNTYYTNTEFVIV   94 (181)
T ss_dssp             --CEEEEEEEETTSSHHHHHHHHHTTSC-EEEECCSSSS-CEEEEETT--EEEEEEEESSSGGGTCGGGGGGTTCCEEEE
T ss_pred             CceeEEEEECCCCCCHHHHHHHHhcCCC-CccCCcCcee-eEEEEECC--EEEEEEECCCCHhHHHHHHHHhccCCEEEE
Confidence            4679999999999999999999999887 3444555432 23444555  778899999999999999999999999999


Q ss_pred             EEeCCCchhHHHHHHHHHHHHhhh--CCCCCEEEEeeCCcccCCcccccCCCCCCcccHHHHHHHH-----HHhCCCceE
Q 036449           84 AFSLISKASYENVSKKWIPELKHY--APGVPIILVGTKLDLRDDKQFFIDHPGAVPISTAQGEELR-----KLIGAPAYI  156 (197)
Q Consensus        84 v~d~~~~~s~~~~~~~~~~~i~~~--~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~  156 (197)
                      |||++++++++.+ ..|+..+...  .++.|+++|+||+|+....            ..++..+..     ...+. +++
T Consensus        95 v~D~~~~~s~~~~-~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~------------~~~~i~~~~~~~~~~~~~~-~~~  160 (181)
T 2h17_A           95 VVDSTDRERISVT-REELYKMLAHEDLRKAGLLIFANKQDVKECM------------TVAEISQFLKLTSIKDHQW-HIQ  160 (181)
T ss_dssp             EEETTCTTTHHHH-HHHHHHHHTCGGGTTCEEEEEEECTTSTTCC------------CHHHHHHHTTGGGCCSSCE-EEE
T ss_pred             EEECCCHHHHHHH-HHHHHHHHhChhhCCCeEEEEEECCCcccCC------------CHHHHHHHhCcccccCCce-EEE
Confidence            9999999999998 5555555443  2689999999999996532            122222222     12233 789


Q ss_pred             EeccCCCCCHHHHHHHHHHH
Q 036449          157 ECSSKTQQNVKAVFDAAIRV  176 (197)
Q Consensus       157 ~~sa~~~~~i~~l~~~i~~~  176 (197)
                      ++||++|.|++++|++|.+.
T Consensus       161 ~~Sa~~g~gi~~l~~~l~~~  180 (181)
T 2h17_A          161 ACCALTGEGLCQGLEWMMSR  180 (181)
T ss_dssp             ECBTTTTBTHHHHHHHHHTC
T ss_pred             EccCCCCcCHHHHHHHHHhh
Confidence            99999999999999999764

>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*

Probab=99.97  E-value=1.2e-31  Score=186.96  Aligned_cols=165  Identities=25%  Similarity=0.357  Sum_probs=121.4

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHhhC--CCCCCCCCceeeeee-EEEEE---CCeEEEEEEEeCCCccccccccccCcCCCc
Q 036449            6 FIKCVTVGDGAVGKTCLLISYTSN--TFPTDYVPTVFDNFS-ANVVV---NGSTVNLGLWDTAGQEDYNRLRPLSYRGAD   79 (197)
Q Consensus         6 ~~~i~v~G~~~~GKstli~~~~~~--~~~~~~~~~~~~~~~-~~~~~---~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~   79 (197)
                      .+||+++|++|||||||++++.+.  .+...+.+|.+..+. ....+   ++..+.+.+||++|++.|..++..++.+++
T Consensus         2 ~~kv~ivG~~gvGKStLl~~l~~~~~~~~~~~~~t~g~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~   81 (184)
T 2zej_A            2 RMKLMIVGNTGSGKTTLLQQLMKTKKSDLGMQSATVGIDVKDWPIQIRDKRKRDLVLNVWDFAGREEFYSTHPHFMTQRA   81 (184)
T ss_dssp             -CEEEEESCTTSSHHHHHHHHTCC-----------CSEEEEEEEC---------CEEEEEEECSHHHHHTTSHHHHHHSE
T ss_pred             ceEEEEECCCCCCHHHHHHHHhcCCCccCCCcceeccEEeEEeeeccccCCCCceEEEEEecCCCHHHHHhhHHHccCCc
Confidence            479999999999999999999984  455556666643332 22222   234678999999999999999888999999


Q ss_pred             EEEEEEeCCCc-hhHHHHHHHHHHHHhhhCCCCCEEEEeeCCcccCCcccccCCCCCCccc---HHHHHHHHHHhCCC--
Q 036449           80 VFILAFSLISK-ASYENVSKKWIPELKHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPIS---TAQGEELRKLIGAP--  153 (197)
Q Consensus        80 ~~i~v~d~~~~-~s~~~~~~~~~~~i~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~--  153 (197)
                      ++++|||++++ .+++.+ ..|+..+....++.|+++|+||+|+.+...          +.   .+.+..+++..+..  
T Consensus        82 ~~i~v~d~~~~~~s~~~~-~~~~~~~~~~~~~~piilv~nK~Dl~~~~~----------~~~~~~~~~~~~~~~~~~~~~  150 (184)
T 2zej_A           82 LYLAVYDLSKGQAEVDAM-KPWLFNIKARASSSPVILVGTHLDVSDEKQ----------RKACMSKITKELLNKRGFPAI  150 (184)
T ss_dssp             EEEEEEEGGGCHHHHHTH-HHHHHHHHHHCTTCEEEEEEECGGGCCHHH----------HHHHHHHHHHHTTTCTTSCEE
T ss_pred             EEEEEEeCCcchhHHHHH-HHHHHHHHhhCCCCcEEEEEECCCcccchh----------hHHHHHHHHHHHHHhcCCcch
Confidence            99999999998 578887 788888877767899999999999965432          21   23455666667763  


Q ss_pred             -ceEEeccCCCC-CHHHHHHHHHHHHcCCC
Q 036449          154 -AYIECSSKTQQ-NVKAVFDAAIRVVLQPP  181 (197)
Q Consensus       154 -~~~~~sa~~~~-~i~~l~~~i~~~~~~~~  181 (197)
                       +++++||+++. +++++++.|.+.+...+
T Consensus       151 ~~~~~~Sa~~~~~~~~~l~~~i~~~~~~~~  180 (184)
T 2zej_A          151 RDYHFVNATEESDALAKLRKTIINESLNFK  180 (184)
T ss_dssp             EEEEECCTTSCCHHHHHHHHHHHHHHHCC-
T ss_pred             hheEEEecccCchhHHHHHHHHHHHHhccc
Confidence             29999999996 99999999999887654

>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*

Probab=99.97  E-value=2.2e-29  Score=177.52  Aligned_cols=164  Identities=32%  Similarity=0.568  Sum_probs=138.3

Q ss_pred             CceeEEEEEcCCCCCHHHHHHHHhhCCCCCCCCCceeee-eeEEEEECCeEEEEEEEeCCCccccccccccCcCCCcEEE
Q 036449            4 SRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDN-FSANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFI   82 (197)
Q Consensus         4 ~~~~~i~v~G~~~~GKstli~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i   82 (197)
                      ...++|+++|++|||||||++++.+..+...+.++.+.. ....+.+++..+.+.+||++|++.+...+..++..+++++
T Consensus         3 ~~~~kv~lvG~~g~GKSTLl~~l~~~~~~~~~~~t~~~~~~~~~i~~~g~~~~~~i~Dt~g~~~~~~~~~~~~~~~~~~i   82 (199)
T 2f9l_A            3 DYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQERYRRITSAYYRGAVGAL   82 (199)
T ss_dssp             SEEEEEEEESSTTSSHHHHHHHHHHSCCCC---CCCSCEEEEEEEEETTEEEEEEEEECSSGGGTTCCCHHHHTTCSEEE
T ss_pred             cceEEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCchhhhhhhHHHHhcCCEEE
Confidence            356999999999999999999999998877777776433 3556778888899999999999999988888899999999


Q ss_pred             EEEeCCCchhHHHHHHHHHHHHhhhC-CCCCEEEEeeCCcccCCcccccCCCCCCcccHHHHHHHHHHhCCCceEEeccC
Q 036449           83 LAFSLISKASYENVSKKWIPELKHYA-PGVPIILVGTKLDLRDDKQFFIDHPGAVPISTAQGEELRKLIGAPAYIECSSK  161 (197)
Q Consensus        83 ~v~d~~~~~s~~~~~~~~~~~i~~~~-~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~  161 (197)
                      +|+|+++..+++.+ ..|+..+.... .+.|+++++||+|+.+...          ...++++.++...+. .++++||+
T Consensus        83 ~v~d~~~~~s~~~~-~~~~~~~~~~~~~~~~i~~v~nK~Dl~~~~~----------~~~~~a~~l~~~~~~-~~~d~Sal  150 (199)
T 2f9l_A           83 LVYDIAKHLTYENV-ERWLKELRDHADSNIVIMLVGNKSDLRHLRA----------VPTDEARAFAEKNNL-SFIETSAL  150 (199)
T ss_dssp             EEEETTCHHHHHTH-HHHHHHHHHHSCTTCEEEEEEECTTCGGGCC----------SCHHHHHHHHHHTTC-EEEECCTT
T ss_pred             EEEECcCHHHHHHH-HHHHHHHHHhcCCCCeEEEEEECcccccccC----------cCHHHHHHHHHHcCC-eEEEEeCC
Confidence            99999999999887 67777776554 5789999999999976443          556778889998887 89999999


Q ss_pred             CCCCHHHHHHHHHHHHcC
Q 036449          162 TQQNVKAVFDAAIRVVLQ  179 (197)
Q Consensus       162 ~~~~i~~l~~~i~~~~~~  179 (197)
                      ++.|++++|++|.+.+..
T Consensus       151 ~~~~i~~l~~~l~~~~~~  168 (199)
T 2f9l_A          151 DSTNVEEAFKNILTEIYR  168 (199)
T ss_dssp             TCTTHHHHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHH
Confidence            999999999999988764

>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=99.97  E-value=3.9e-30  Score=178.86  Aligned_cols=157  Identities=15%  Similarity=0.191  Sum_probs=118.7

Q ss_pred             CceeEEEEEcCCCCCHHHHHHHHhhCCCCCCCCCceeeeeeEEEEECCeEEEEEEEeCCCccccccccccCcCCCcEEEE
Q 036449            4 SRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFIL   83 (197)
Q Consensus         4 ~~~~~i~v~G~~~~GKstli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~   83 (197)
                      ++.++|+++|++|||||||++++..+.+ ..+.+|.+. ....+.+++  +.+.+||+||++.+...+..++.++|++++
T Consensus        16 ~~~~~i~v~G~~~~GKssli~~l~~~~~-~~~~~t~~~-~~~~~~~~~--~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii~   91 (183)
T 1moz_A           16 NKELRILILGLDGAGKTTILYRLQIGEV-VTTKPTIGF-NVETLSYKN--LKLNVWDLGGQTSIRPYWRCYYADTAAVIF   91 (183)
T ss_dssp             SSCEEEEEEEETTSSHHHHHHHTCCSEE-EEECSSTTC-CEEEEEETT--EEEEEEEEC----CCTTGGGTTTTEEEEEE
T ss_pred             CCccEEEEECCCCCCHHHHHHHHhcCCc-CccCCcCcc-ceEEEEECC--EEEEEEECCCCHhHHHHHHHHhccCCEEEE
Confidence            6789999999999999999999998776 334455442 233444555  778899999999999999999999999999


Q ss_pred             EEeCCCchhHHHHHHHHHHHHhhh--CCCCCEEEEeeCCcccCCcccccCCCCCCcccHHHHHHHHHH-----hCCCceE
Q 036449           84 AFSLISKASYENVSKKWIPELKHY--APGVPIILVGTKLDLRDDKQFFIDHPGAVPISTAQGEELRKL-----IGAPAYI  156 (197)
Q Consensus        84 v~d~~~~~s~~~~~~~~~~~i~~~--~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~  156 (197)
                      |+|++++++++.+ ..|+..+...  .++.|+++|+||+|+.+..            ..++..+....     .+. +++
T Consensus        92 v~d~~~~~s~~~~-~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~------------~~~~i~~~~~~~~~~~~~~-~~~  157 (183)
T 1moz_A           92 VVDSTDKDRMSTA-SKELHLMLQEEELQDAALLVFANKQDQPGAL------------SASEVSKELNLVELKDRSW-SIV  157 (183)
T ss_dssp             EEETTCTTTHHHH-HHHHHHHTTSSTTSSCEEEEEEECTTSTTCC------------CHHHHHHHTTTTTCCSSCE-EEE
T ss_pred             EEECCCHHHHHHH-HHHHHHHHcChhhCCCeEEEEEECCCCCCCC------------CHHHHHHHhCcccccCCce-EEE
Confidence            9999999999988 5666666554  2689999999999996532            22222222211     122 689


Q ss_pred             EeccCCCCCHHHHHHHHHHHHc
Q 036449          157 ECSSKTQQNVKAVFDAAIRVVL  178 (197)
Q Consensus       157 ~~sa~~~~~i~~l~~~i~~~~~  178 (197)
                      ++||+++.|++++|++|.+.+.
T Consensus       158 ~~Sa~~~~gi~~l~~~l~~~~~  179 (183)
T 1moz_A          158 ASSAIKGEGITEGLDWLIDVIK  179 (183)
T ss_dssp             EEBGGGTBTHHHHHHHHHHHHH
T ss_pred             EccCCCCcCHHHHHHHHHHHHH
Confidence            9999999999999999998875

>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*

Probab=99.97  E-value=1e-28  Score=173.10  Aligned_cols=161  Identities=34%  Similarity=0.595  Sum_probs=138.8

Q ss_pred             ceeEEEEEcCCCCCHHHHHHHHhhCCCCCCCCCceeeee-eEEEEECCeEEEEEEEeCCCccccccccccCcCCCcEEEE
Q 036449            5 RFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNF-SANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFIL   83 (197)
Q Consensus         5 ~~~~i~v~G~~~~GKstli~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~   83 (197)
                      ..++|+++|++|||||||++++.+..+...+.++.+..+ ...+.+++..+.+++||++|++++...+..++..++++++
T Consensus        28 ~~~kv~lvG~~g~GKSTLl~~l~~~~~~~~~~~t~~~~~~~~~i~~~g~~~~~~i~Dt~g~~~~~~~~~~~~~~~~~~i~  107 (191)
T 1oix_A           28 YLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGLERYRAITSAYYRGAVGALL  107 (191)
T ss_dssp             EEEEEEEEECTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEEEEEEETTEEEEEEEEEECSCCSSSCCCHHHHTTCCEEEE
T ss_pred             cceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEECCCCcchhhhhHHHhhcCCEEEE
Confidence            458999999999999999999999988877777775444 5667788888889999999999999988888999999999


Q ss_pred             EEeCCCchhHHHHHHHHHHHHhhhC-CCCCEEEEeeCCcccCCcccccCCCCCCcccHHHHHHHHHHhCCCceEEeccCC
Q 036449           84 AFSLISKASYENVSKKWIPELKHYA-PGVPIILVGTKLDLRDDKQFFIDHPGAVPISTAQGEELRKLIGAPAYIECSSKT  162 (197)
Q Consensus        84 v~d~~~~~s~~~~~~~~~~~i~~~~-~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~  162 (197)
                      |+|+++..+++.+ ..|+..+.... ++.|+++++||+|+.+...          ...++++.++...+. .++++||++
T Consensus       108 v~d~~~~~s~~~~-~~~~~~~~~~~~~~~~i~~v~nK~Dl~~~~~----------~~~~~a~~l~~~~~~-~~ld~Sald  175 (191)
T 1oix_A          108 VYDIAKHLTYENV-ERWLKELRDHADSNIVIMLVGNKSDLRHLRA----------VPTDEARAFAEKNGL-SFIETSALD  175 (191)
T ss_dssp             EEETTCHHHHHTH-HHHHHHHHHHSCTTCEEEEEEECGGGGGGCC----------SCHHHHHHHHHHTTC-EEEECCTTT
T ss_pred             EEECcCHHHHHHH-HHHHHHHHHhcCCCCcEEEEEECcccccccc----------cCHHHHHHHHHHcCC-EEEEEeCCC
Confidence            9999999999887 67777766544 5789999999999976443          456788899998887 899999999


Q ss_pred             CCCHHHHHHHHHHHH
Q 036449          163 QQNVKAVFDAAIRVV  177 (197)
Q Consensus       163 ~~~i~~l~~~i~~~~  177 (197)
                      +.+++++|+.|.+.+
T Consensus       176 ~~~v~~l~~~l~~~i  190 (191)
T 1oix_A          176 STNVEAAFQTILTEI  190 (191)
T ss_dssp             CTTHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHh
Confidence            999999999998875

>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2

Probab=99.97  E-value=4.1e-30  Score=183.20  Aligned_cols=173  Identities=16%  Similarity=0.135  Sum_probs=116.7

Q ss_pred             CCceeEEEEEcCCCCCHHHHHHHHhhCCCCCCCCCceeeeeeEEEEECCe-EEEEEEEeCCCcccccc-ccccCcCCCcE
Q 036449            3 ASRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGS-TVNLGLWDTAGQEDYNR-LRPLSYRGADV   80 (197)
Q Consensus         3 ~~~~~~i~v~G~~~~GKstli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~i~D~~G~~~~~~-~~~~~~~~~~~   80 (197)
                      ..+.++|+++|.+|+|||||++++..+.+...+.++......  +.+++. .+.+++|||||++.+.. ++..++..+|+
T Consensus         4 ~~~~~ki~vvG~~~~GKTsli~~l~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~   81 (214)
T 2fh5_B            4 KSSQRAVLFVGLCDSGKTLLFVRLLTGQYRDTQTSITDSSAI--YKVNNNRGNSLTLIDLPGHESLRFQLLDRFKSSARA   81 (214)
T ss_dssp             ----CEEEEECSTTSSHHHHHHHHHHSCCCCBCCCCSCEEEE--EECSSTTCCEEEEEECCCCHHHHHHHHHHHGGGEEE
T ss_pred             CCCCCEEEEECCCCCCHHHHHHHHhCCCcccccCCcceeeEE--EEecCCCccEEEEEECCCChhHHHHHHHHHHhhCCE
Confidence            356799999999999999999999999888777655533332  445533 57889999999999887 78888999999


Q ss_pred             EEEEEeCCCch-hHHHHHHHHHHHHhhh---CCCCCEEEEeeCCcccCCcccccC------------------------C
Q 036449           81 FILAFSLISKA-SYENVSKKWIPELKHY---APGVPIILVGTKLDLRDDKQFFID------------------------H  132 (197)
Q Consensus        81 ~i~v~d~~~~~-s~~~~~~~~~~~i~~~---~~~~~~ivv~nK~D~~~~~~~~~~------------------------~  132 (197)
                      +|+|||+++.+ ++......|...+...   .++.|+++|+||+|+.........                        .
T Consensus        82 ~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~l~~~l~~~~~~~~~~~s~~~~~  161 (214)
T 2fh5_B           82 VVFVVDSAAFQREVKDVAEFLYQVLIDSMALKNSPSLLIACNKQDIAMAKSAKLIQQQLEKELNTLRVTRSAAPSTLDSS  161 (214)
T ss_dssp             EEEEEETTTHHHHHHHHHHHHHHHHHHHHTSTTCCEEEEEEECTTSTTCCCHHHHHHHHHHHHHHHHHHCC---------
T ss_pred             EEEEEECCCcCHHHHHHHHHHHHHHhhhhhcccCCCEEEEEECCCCCCcccHHHHHHHHHHHHHHHhccchhccccccCC
Confidence            99999999854 4666645666665542   257999999999999764320000                        0


Q ss_pred             CCCCcccHHHHHHHHHHhC--CCceEEeccCCC------CCHHHHHHHHHHHH
Q 036449          133 PGAVPISTAQGEELRKLIG--APAYIECSSKTQ------QNVKAVFDAAIRVV  177 (197)
Q Consensus       133 ~~~~~~~~~~~~~~~~~~~--~~~~~~~sa~~~------~~i~~l~~~i~~~~  177 (197)
                      ...+.+..++++.|+....  ..+|++|||++|      .|++++|++|.+.+
T Consensus       162 ~~~~~~~~~~~~~~~~~~~~~~~~~~e~SAk~g~~~~~~~gv~~lf~~l~~~~  214 (214)
T 2fh5_B          162 STAPAQLGKKGKEFEFSQLPLKVEFLECSAKGGRGDTGSADIQDLEKWLAKIA  214 (214)
T ss_dssp             ---CCCSSCTTSCCCGGGSSSCEEEEECBCC-------CCBCHHHHHHHHHHC
T ss_pred             ccccccccCCCCCcccccCCCcEEEEEeeccCCCccccccChHHHHHHHHHhC
Confidence            0000000011111111110  237999999999      99999999998753

>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*

Probab=99.97  E-value=7.9e-29  Score=171.45  Aligned_cols=158  Identities=20%  Similarity=0.207  Sum_probs=117.3

Q ss_pred             CceeEEEEEcCCCCCHHHHHHHHhhCCCCCCCCCcee-eeeeEEEEECCeEEEEEEEeCCCccccccccccCcCCCcEEE
Q 036449            4 SRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVF-DNFSANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFI   82 (197)
Q Consensus         4 ~~~~~i~v~G~~~~GKstli~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i   82 (197)
                      ++.++|+++|.+|+|||||++++..+.+...+.++.. ......+.+++.  .+.+||+||++.+...+..++..+|+++
T Consensus         6 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~l~Dt~G~~~~~~~~~~~~~~~d~~i   83 (178)
T 2lkc_A            6 ERPPVVTIMGHVDHGKTTLLDAIRHSKVTEQEAGGITQHIGAYQVTVNDK--KITFLDTPGHEAFTTMRARGAQVTDIVI   83 (178)
T ss_dssp             CCCCEEEEESCTTTTHHHHHHHHHTTCSSCSSCCSSSTTCCCCEEEETTE--EEEESCCCSSSSSSCSCCSSCCCCCEEE
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhCCccccCCCCceeEeeeEEEEEeCCc--eEEEEECCCCHHHHHHHHHHHhhCCEEE
Confidence            5679999999999999999999999888766555543 233345556664  5679999999999999999999999999


Q ss_pred             EEEeCCCchhHHHHHHHHHHHHhhhCCCCCEEEEeeCCcccCCcccccCCCCCCcccHHHHHHHHHHhCC--------Cc
Q 036449           83 LAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPISTAQGEELRKLIGA--------PA  154 (197)
Q Consensus        83 ~v~d~~~~~s~~~~~~~~~~~i~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~  154 (197)
                      +|+|++++...+..  .++..+..  ++.|+++|+||+|+....             .++........+.        .+
T Consensus        84 ~v~d~~~~~~~~~~--~~l~~~~~--~~~p~ilv~nK~Dl~~~~-------------~~~~~~~~~~~~~~~~~~~~~~~  146 (178)
T 2lkc_A           84 LVVAADDGVMPQTV--EAINHAKA--ANVPIIVAINKMDKPEAN-------------PDRVMQELMEYNLVPEEWGGDTI  146 (178)
T ss_dssp             EEEETTCCCCHHHH--HHHHHHGG--GSCCEEEEEETTTSSCSC-------------HHHHHHHHTTTTCCBTTTTSSEE
T ss_pred             EEEECCCCCcHHHH--HHHHHHHh--CCCCEEEEEECccCCcCC-------------HHHHHHHHHhcCcChhHcCCccc
Confidence            99999985443333  22333333  379999999999996532             1222222222211        27


Q ss_pred             eEEeccCCCCCHHHHHHHHHHHHcCC
Q 036449          155 YIECSSKTQQNVKAVFDAAIRVVLQP  180 (197)
Q Consensus       155 ~~~~sa~~~~~i~~l~~~i~~~~~~~  180 (197)
                      ++++||++|.|++++|++|.+.+...
T Consensus       147 ~~~~Sa~~~~gv~~l~~~l~~~~~~~  172 (178)
T 2lkc_A          147 FCKLSAKTKEGLDHLLEMILLVSEME  172 (178)
T ss_dssp             EEECCSSSSHHHHHHHHHHHHHHHHT
T ss_pred             EEEEecCCCCCHHHHHHHHHHhhhhh
Confidence            99999999999999999999887654

>3c5h_A Glucocorticoid receptor DNA-binding factor 1; RAS, GTPase, glucorticoid receptor, structural genomics consortium, SGC, alternative splicing; HET: GNP; 1.80A {Homo sapiens}

Probab=99.96  E-value=1.4e-29  Score=185.03  Aligned_cols=162  Identities=18%  Similarity=0.283  Sum_probs=122.9

Q ss_pred             CCceeEEEEEcCC---------CCCHHHHHHHHhh---CCCCCCCCCce-eeee-eEE--------------EEECCeEE
Q 036449            3 ASRFIKCVTVGDG---------AVGKTCLLISYTS---NTFPTDYVPTV-FDNF-SAN--------------VVVNGSTV   54 (197)
Q Consensus         3 ~~~~~~i~v~G~~---------~~GKstli~~~~~---~~~~~~~~~~~-~~~~-~~~--------------~~~~~~~~   54 (197)
                      ..+.+||+++|.+         |||||||+++|..   ..+...+.+++ +..+ ...              ..+++..+
T Consensus        16 ~~~~~ki~lvG~~~~~~~~~~~~vGKSsLi~~l~~~~~~~~~~~~~~t~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~   95 (255)
T 3c5h_A           16 FQGTYNISVVGLSGTEKEKGQCGIGKSCLCNRFVRPSADEFHLDHTSVLSTSDFGGRVVNNDHFLYWGEVSRSLEDCVEC   95 (255)
T ss_dssp             CCSCEEEEEEESCCCTTTTTTCCCSHHHHHHHHHCCSTTTCCSCCCCEECHHHHTSTTTTTCSEEEEEEEC---------
T ss_pred             CCceeEEEEECCCccccccCCCCcCHHHHHHHHHhccCCccccccCCcccccccceeEeecccccccccccccccCCcEE
Confidence            3566999999999         9999999999998   56666666665 2211 111              11456778


Q ss_pred             EEEEEe-----------------------CCCccccccccccCcC---------------------CCcEEEEEEeCCCc
Q 036449           55 NLGLWD-----------------------TAGQEDYNRLRPLSYR---------------------GADVFILAFSLISK   90 (197)
Q Consensus        55 ~~~i~D-----------------------~~G~~~~~~~~~~~~~---------------------~~~~~i~v~d~~~~   90 (197)
                      .+++||                       ++|+++|..++..++.                     ++|++|+|||++++
T Consensus        96 ~l~i~D~~~~~D~~~~~~~~~~~~~~~~~~~g~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~vilV~D~t~~  175 (255)
T 3c5h_A           96 KMHIVEQTEFIDDQTFQPHRSTALQPYIKRAAATKLASAEKLMYFCTDQLGLEQDFEQKQMPDGKLLVDGFLLGIDVSRG  175 (255)
T ss_dssp             CEEEEEECCCEETTTCSBTTGGGCCCHHHHHTCSEEECTTCBCCCCGGGTTCGGGSCCCBCGGGEEECCEEEEEEECBC-
T ss_pred             EEEEEEccccccccccccccccccccccccchhhhhhhhhhhhhhccccccccccccccccccccccCCEEEEEEECCCC
Confidence            899999                       7788888888888887                     79999999999998


Q ss_pred             --hhHHHHHHHHHHHHhhh--CCCCCEEEEeeCCcccCCcccccCCCCCCcccHHHHHHHHHHh-CCCceEEeccCCCCC
Q 036449           91 --ASYENVSKKWIPELKHY--APGVPIILVGTKLDLRDDKQFFIDHPGAVPISTAQGEELRKLI-GAPAYIECSSKTQQN  165 (197)
Q Consensus        91 --~s~~~~~~~~~~~i~~~--~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~sa~~~~~  165 (197)
                        .+++.+ ..|+..+...  .++.|+++|+||+|+...+.          +  +++..++... +. +++++||+++.|
T Consensus       176 ~~~s~~~~-~~~l~~i~~~~~~~~~piilV~NK~Dl~~~~~----------v--~~~~~~~~~~~~~-~~~e~SAk~g~g  241 (255)
T 3c5h_A          176 MNRNFDDQ-LKFVSNLYNQLAKTKKPIVVVLTKCDEGVERY----------I--RDAHTFALSKKNL-QVVETSARSNVN  241 (255)
T ss_dssp             ---CHHHH-HHHHHHHHHHHHHTTCCEEEEEECGGGBCHHH----------H--HHHHHHHHTSSSC-CEEECBTTTTBS
T ss_pred             chhhHHHH-HHHHHHHHHHhccCCCCEEEEEEcccccccHH----------H--HHHHHHHHhcCCC-eEEEEECCCCCC
Confidence              999998 6888777654  26899999999999965432          2  5667777764 55 899999999999


Q ss_pred             HHHHHHHHHHHHc
Q 036449          166 VKAVFDAAIRVVL  178 (197)
Q Consensus       166 i~~l~~~i~~~~~  178 (197)
                      ++++|++|++.+.
T Consensus       242 v~elf~~l~~~l~  254 (255)
T 3c5h_A          242 VDLAFSTLVQLID  254 (255)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhc
Confidence            9999999998764

>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}

Probab=99.96  E-value=5.6e-29  Score=179.04  Aligned_cols=167  Identities=11%  Similarity=0.061  Sum_probs=117.3

Q ss_pred             CceeEEEEEcCCCCCHHHHHHHHhhCCCCC-CCCCceeeeeeEEEEECCeEEEEEEEeCCCcc------c----cccccc
Q 036449            4 SRFIKCVTVGDGAVGKTCLLISYTSNTFPT-DYVPTVFDNFSANVVVNGSTVNLGLWDTAGQE------D----YNRLRP   72 (197)
Q Consensus         4 ~~~~~i~v~G~~~~GKstli~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~------~----~~~~~~   72 (197)
                      .+.++|+++|.+|||||||++++.+..+.. ....++...........+  ..+.+|||||+.      .    +.. +.
T Consensus        27 ~~~~kI~vvG~~~vGKSsLin~l~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~l~DtpG~~~~~~~~~~~~~~~~-~~  103 (228)
T 2qu8_A           27 PHKKTIILSGAPNVGKSSFMNIVSRANVDVQSYSFTTKNLYVGHFDHKL--NKYQIIDTPGLLDRAFENRNTIEMTT-IT  103 (228)
T ss_dssp             TTSEEEEEECSTTSSHHHHHHHHTTTCEEEECC-----CEEEEEEEETT--EEEEEEECTTTTTSCGGGCCHHHHHH-HH
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhCCCCccCCCCCcceeeeeeeeecCC--CeEEEEECCCCcCcccchhhhHHHHH-HH
Confidence            467999999999999999999999887642 222222222223333344  678899999983      2    111 12


Q ss_pred             cCcCCCcEEEEEEeCCCchhHHHH-HHHHHHHHhhhCCCCCEEEEeeCCcccCCcccccCCCCCCcccH---HHHHHHHH
Q 036449           73 LSYRGADVFILAFSLISKASYENV-SKKWIPELKHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPIST---AQGEELRK  148 (197)
Q Consensus        73 ~~~~~~~~~i~v~d~~~~~s~~~~-~~~~~~~i~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~---~~~~~~~~  148 (197)
                      .++..+|++|+|||++++.++... ...|+..+....++.|+++|+||+|+.+.+.          +..   +.+..++.
T Consensus       104 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~l~~~~~~~piilv~nK~Dl~~~~~----------~~~~~~~~~~~~~~  173 (228)
T 2qu8_A          104 ALAHINGVILFIIDISEQCGLTIKEQINLFYSIKSVFSNKSIVIGFNKIDKCNMDS----------LSIDNKLLIKQILD  173 (228)
T ss_dssp             HHHTSSEEEEEEEETTCTTSSCHHHHHHHHHHHHTCC-CCCEEEEEECGGGCC--C----------CCHHHHHHHHHHHH
T ss_pred             HhhccccEEEEEEecccccCcchHHHHHHHHHHHHhhcCCcEEEEEeCcccCCchh----------hHHHHHHHHHHHHH
Confidence            346788999999999998876522 1356666666556899999999999976443          332   34566766


Q ss_pred             HhC--CCceEEeccCCCCCHHHHHHHHHHHHcCCCchh
Q 036449          149 LIG--APAYIECSSKTQQNVKAVFDAAIRVVLQPPKTK  184 (197)
Q Consensus       149 ~~~--~~~~~~~sa~~~~~i~~l~~~i~~~~~~~~~~~  184 (197)
                      ..+  . +++++||++|.|++++|++|.+.+.+.+...
T Consensus       174 ~~~~~~-~~~~~SA~~g~gi~~l~~~l~~~i~~~~~~~  210 (228)
T 2qu8_A          174 NVKNPI-KFSSFSTLTGVGVEQAKITACELLKNDQAES  210 (228)
T ss_dssp             HCCSCE-EEEECCTTTCTTHHHHHHHHHHHHHHHHHHH
T ss_pred             hcCCCc-eEEEEecccCCCHHHHHHHHHHHHHHHHHHH
Confidence            665  5 8999999999999999999999987655433

>3r7w_B Gtpase2, GTP-binding protein GTR2; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_B*

Probab=99.96  E-value=2.9e-30  Score=191.90  Aligned_cols=164  Identities=15%  Similarity=0.180  Sum_probs=119.6

Q ss_pred             EEEEEcCCCCCHHHHHHHHhhCCCCC---CCCCceeeeeeEEEEECCeEEEEEEEeCCCcccccc---ccccCcCCCcEE
Q 036449            8 KCVTVGDGAVGKTCLLISYTSNTFPT---DYVPTVFDNFSANVVVNGSTVNLGLWDTAGQEDYNR---LRPLSYRGADVF   81 (197)
Q Consensus         8 ~i~v~G~~~~GKstli~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~---~~~~~~~~~~~~   81 (197)
                      ||+++|.+|||||||++++.++.+..   .+.+|.+..+..   ++ ..+.+++|||+||++|..   .+..++++++++
T Consensus         1 KIvllGdsgvGKTSLl~~~~~~~~~~~~~~~~~Tig~~~~~---v~-~~v~LqIWDTAGQErf~~~~l~~~~yyr~a~~~   76 (331)
T 3r7w_B            1 MVLLMGVRRCGKSSICKVVFHNMQPLDTLYLESTSNPSLEH---FS-TLIDLAVMELPGQLNYFEPSYDSERLFKSVGAL   76 (331)
T ss_dssp             CEEEECSTTSSTTHHHHHHHSCCCSGGGTTCCCCCSCCCEE---EC-SSSCEEEEECCSCSSSCCCSHHHHHHHTTCSEE
T ss_pred             CEEEECCCCCCHHHHHHHHHcCCCCCccceecCeeeeeeEE---Ec-cEEEEEEEECCCchhccchhhhhhhhccCCCEE
Confidence            68999999999999999887654432   245566544432   22 347899999999999974   357889999999


Q ss_pred             EEEEeCCCc--hhHHHHHHHHHHHHhhhCCCCCEEEEeeCCcccCCcccccCCCCCCcccHHHHHHHHHH----hCCCce
Q 036449           82 ILAFSLISK--ASYENVSKKWIPELKHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPISTAQGEELRKL----IGAPAY  155 (197)
Q Consensus        82 i~v~d~~~~--~s~~~~~~~~~~~i~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~  155 (197)
                      |+|||++++  ++.... ..|+..+....+++|++++|||+|+.......   ...+.+..++++++++.    .++ +|
T Consensus        77 IlV~Ditd~~~~~~~~l-~~~l~~~~~~~~~ipillvgNK~DL~~~~~R~---~~~R~V~~~~~~~la~~~~~~~~i-~f  151 (331)
T 3r7w_B           77 VYVIDSQDEYINAITNL-AMIIEYAYKVNPSINIEVLIHKVDGLSEDFKV---DAQRDIMQRTGEELLELGLDGVQV-SF  151 (331)
T ss_dssp             EEECCCSSCTTHHHHHH-HHHHHHHHHHCTTCEEEEECCCCCSSCSHHHH---HHHHHHHHHHHHTTSSSSCSCCCE-EE
T ss_pred             EEEEECCchHHHHHHHH-HHHHHHHhhcCCCCcEEEEEECcccCchhhhh---hHHHHhhHHHHHHHHhhcccccCc-eE
Confidence            999999998  223333 33455555556899999999999997642100   00012556677777775    566 89


Q ss_pred             EEeccCCCCCHHHHHHHHHHHHcCCC
Q 036449          156 IECSSKTQQNVKAVFDAAIRVVLQPP  181 (197)
Q Consensus       156 ~~~sa~~~~~i~~l~~~i~~~~~~~~  181 (197)
                      ++|||++ .+|.++|..+++.+..+.
T Consensus       152 ~eTSAkd-~nV~eAFs~iv~~li~~~  176 (331)
T 3r7w_B          152 YLTSIFD-HSIYEAFSRIVQKLIPEL  176 (331)
T ss_dssp             ECCCSSS-SHHHHHHHHHHTTSSTTH
T ss_pred             EEeccCC-CcHHHHHHHHHHHHHhhH
Confidence            9999998 589999999999887653

>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens}

Probab=99.96  E-value=4e-29  Score=188.60  Aligned_cols=160  Identities=16%  Similarity=0.208  Sum_probs=115.9

Q ss_pred             CceeEEEEEcCCCCCHHHHHHHHhhCCCCCCCCCceeeeeeEEEEECCeEEEEEEEeCCCccccccccccCcCCCcEEEE
Q 036449            4 SRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFIL   83 (197)
Q Consensus         4 ~~~~~i~v~G~~~~GKstli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~   83 (197)
                      .+.++|+|+|.+|+|||||+++|..+.+...+ +|.+..+ ..+...+  +.+++|||||++.|..++..++..+|++|+
T Consensus       163 ~~~~kI~ivG~~~vGKSsLl~~l~~~~~~~~~-pT~~~~~-~~~~~~~--~~l~i~Dt~G~~~~~~~~~~~~~~ad~vil  238 (329)
T 3o47_A          163 KKEMRILMVGLDAAGKTTILYKLKLGEIVTTI-PTIGFNV-ETVEYKN--ISFTVWDVGGQDKIRPLWRHYFQNTQGLIF  238 (329)
T ss_dssp             CCSEEEEEEESTTSSHHHHHHHTCSSCCEEEE-EETTEEE-EEEEETT--EEEEEEECC-----CCSHHHHHTTEEEEEE
T ss_pred             cCcceEEEECCCCccHHHHHHHHhCCCCCCcc-cccceEE-EEEecCc--EEEEEEECCCCHhHHHHHHHHhccCCEEEE
Confidence            45689999999999999999999988765432 3333222 2233333  778899999999999999999999999999


Q ss_pred             EEeCCCchhHHHHHHHHHHHHhhhC-CCCCEEEEeeCCcccCCcccccCCCCCCcccHHHHH-HHH----HHhCCCceEE
Q 036449           84 AFSLISKASYENVSKKWIPELKHYA-PGVPIILVGTKLDLRDDKQFFIDHPGAVPISTAQGE-ELR----KLIGAPAYIE  157 (197)
Q Consensus        84 v~d~~~~~s~~~~~~~~~~~i~~~~-~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~-~~~----~~~~~~~~~~  157 (197)
                      |||++++.+++.+...|...+.... ++.|+++|+||+|+.+...            .++.. .+.    ...+. ++++
T Consensus       239 V~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilV~NK~Dl~~~~~------------~~~i~~~~~~~~~~~~~~-~~~~  305 (329)
T 3o47_A          239 VVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAMN------------AAEITDKLGLHSLRHRNW-YIQA  305 (329)
T ss_dssp             EEETTCSSSHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCC------------HHHHHHHHTCTTCCSSCE-EEEE
T ss_pred             EEECCchHHHHHHHHHHHHHHhhhccCCCeEEEEEECccCCcccC------------HHHHHHHhchhhhhcCCC-EEEE
Confidence            9999999999998555555555443 6899999999999975421            11111 111    11122 5899


Q ss_pred             eccCCCCCHHHHHHHHHHHHcCC
Q 036449          158 CSSKTQQNVKAVFDAAIRVVLQP  180 (197)
Q Consensus       158 ~sa~~~~~i~~l~~~i~~~~~~~  180 (197)
                      +||++|.|++++|++|.+.+.+.
T Consensus       306 vSAk~g~gi~el~~~l~~~l~~~  328 (329)
T 3o47_A          306 TCATSGDGLYEGLDWLSNQLRNQ  328 (329)
T ss_dssp             CBTTTTBTHHHHHHHHHHHHTC-
T ss_pred             EECCCCcCHHHHHHHHHHHHHhc
Confidence            99999999999999999988654

>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A*

Probab=99.96  E-value=5.8e-29  Score=186.14  Aligned_cols=169  Identities=18%  Similarity=0.232  Sum_probs=128.4

Q ss_pred             ceeEEEEEcCCCCCHHHHHHHHhhCCC--CC-CCCCceeeeeeEEEEECCeEEEEEEEeCCCcccc-----ccccccCcC
Q 036449            5 RFIKCVTVGDGAVGKTCLLISYTSNTF--PT-DYVPTVFDNFSANVVVNGSTVNLGLWDTAGQEDY-----NRLRPLSYR   76 (197)
Q Consensus         5 ~~~~i~v~G~~~~GKstli~~~~~~~~--~~-~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~-----~~~~~~~~~   76 (197)
                      ..+||+++|.+|||||||++++.++..  .. .+.+|.+..+. ...+++ .+.+.+||+||++.+     ...+..++.
T Consensus         2 ~~~KI~lvG~~~vGKSSLi~~l~~~~~~~~~~~~~~Ti~~~~~-~~~~~~-~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~   79 (307)
T 3r7w_A            2 LGSKLLLMGRSGSGKSSMRSIIFSNYSAFDTRRLGATIDVEHS-HLRFLG-NMTLNLWDCGGQDVFMENYFTKQKDHIFQ   79 (307)
T ss_dssp             CEEEEEEECCTTSSHHHHHHHHHSCCCTGGGGGCCCCCSEEEE-EEEETT-TEEEEEEEECCSHHHHHHHHTTTHHHHHT
T ss_pred             CceEEEEECCCCCCHHHHHHHHHhCCCCccccCcCCccceEEE-EEEeCC-ceEEEEEECCCcHHHhhhhhhhHHHHHhc
Confidence            468999999999999999999998733  22 33444443333 333433 478999999999988     678888899


Q ss_pred             CCcEEEEEEeCCCchhHHHHHHHHH---HHHhhhCCCCCEEEEeeCCcccCCcccccCCCCCCcccHHHHHHHHHHhCC-
Q 036449           77 GADVFILAFSLISKASYENVSKKWI---PELKHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPISTAQGEELRKLIGA-  152 (197)
Q Consensus        77 ~~~~~i~v~d~~~~~s~~~~~~~~~---~~i~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-  152 (197)
                      ++|++|+|||++++++++.+ ..|.   ..+....++.|+++|+||+|+.+....    .....+..+++.++++.+|. 
T Consensus        80 ~ad~vi~V~D~t~~~s~~~l-~~~~~~l~~l~~~~~~~piilv~NK~Dl~~~~~r----~~~~~v~~~~~~~~~~~~g~~  154 (307)
T 3r7w_A           80 MVQVLIHVFDVESTEVLKDI-EIFAKALKQLRKYSPDAKIFVLLHKMDLVQLDKR----EELFQIMMKNLSETSSEFGFP  154 (307)
T ss_dssp             TCSEEEEEEETTCSCHHHHH-HHHHHHHHHHHHHCTTCEEEEEEECGGGSCHHHH----HHHHHHHHHHHHHHHHTTTCC
T ss_pred             cCCEEEEEEECCChhhHHHH-HHHHHHHHHHHHhCCCCeEEEEEecccccchhhh----hHHHHHHHHHHHHHHHHcCCC
Confidence            99999999999999999988 5554   444445678999999999999762110    00001345778899999883 


Q ss_pred             -CceEEeccCCCCCHHHHHHHHHHHHcCCC
Q 036449          153 -PAYIECSSKTQQNVKAVFDAAIRVVLQPP  181 (197)
Q Consensus       153 -~~~~~~sa~~~~~i~~l~~~i~~~~~~~~  181 (197)
                       .+++++||++ .++.++|..+++.+....
T Consensus       155 ~~~~~~tSa~~-~~i~e~~~~iv~~li~~~  183 (307)
T 3r7w_A          155 NLIGFPTSIWD-ESLYKAWSQIVCSLIPNM  183 (307)
T ss_dssp             SCEEEECCTTS-SHHHHHHHHHHHTTCSCH
T ss_pred             CeEEEEeeecC-ChHHHHHHHHHHHHcCCH
Confidence             4899999999 899999999998876653

>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*

Probab=99.96  E-value=1.4e-28  Score=168.49  Aligned_cols=154  Identities=16%  Similarity=0.199  Sum_probs=112.5

Q ss_pred             ceeEEEEEcCCCCCHHHHHHHHhhCCCCCCCCCce-eeeeeEEEEECCeEEEEEEEeCCCcccccc------ccccCcC-
Q 036449            5 RFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTV-FDNFSANVVVNGSTVNLGLWDTAGQEDYNR------LRPLSYR-   76 (197)
Q Consensus         5 ~~~~i~v~G~~~~GKstli~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~------~~~~~~~-   76 (197)
                      +.++|+++|++|+|||||++++.+..+.....++. .......+.+++  ..+++|||||++.+..      +...++. 
T Consensus         2 ~~~~v~lvG~~gvGKStL~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~--~~l~i~Dt~G~~~~~~~~~~~~~~~~~~~~   79 (165)
T 2wji_A            2 KSYEIALIGNPNVGKSTIFNALTGENVYIGNWPGVTVEKKEGEFEYNG--EKFKVVDLPGVYSLTANSIDEIIARDYIIN   79 (165)
T ss_dssp             CEEEEEEECSTTSSHHHHHHHHHCCSSSCC-----CCCCCEEEEEETT--EEEEEEECCCCSCSSSSSHHHHHHHHHHHH
T ss_pred             CccEEEEECCCCCCHHHHHHHHhCCCeeccCCCCcceeeeEEEEEECC--cEEEEEECCCcccCCCcchhHHHHHHHHhc
Confidence            35899999999999999999999876544333332 233344455555  5688999999987753      2244443 


Q ss_pred             -CCcEEEEEEeCCCchhHHHHHHHHHHHHhhhCCCCCEEEEeeCCcccCCcccccCCCCCCcccHHHHHHHHHHhCCCce
Q 036449           77 -GADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPISTAQGEELRKLIGAPAY  155 (197)
Q Consensus        77 -~~~~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  155 (197)
                       +++++++|+|+++.+..    ..|+..+...  +.|+++|+||+|+...+.          +. .++..+++.++. ++
T Consensus        80 ~~~~~~i~v~D~~~~~~~----~~~~~~~~~~--~~p~ilv~nK~Dl~~~~~----------~~-~~~~~~~~~~~~-~~  141 (165)
T 2wji_A           80 EKPDLVVNIVDATALERN----LYLTLQLMEM--GANLLLALNKMDLAKSLG----------IE-IDVDKLEKILGV-KV  141 (165)
T ss_dssp             HCCSEEEEEEETTCHHHH----HHHHHHHHHT--TCCEEEEEECHHHHHHTT----------CC-CCHHHHHHHHTS-CE
T ss_pred             CCCCEEEEEecCCchhHh----HHHHHHHHhc--CCCEEEEEEchHhccccC----------hh-hHHHHHHHHhCC-CE
Confidence             79999999999886432    3455555553  799999999999965332          22 235678888887 89


Q ss_pred             EEeccCCCCCHHHHHHHHHHHHc
Q 036449          156 IECSSKTQQNVKAVFDAAIRVVL  178 (197)
Q Consensus       156 ~~~sa~~~~~i~~l~~~i~~~~~  178 (197)
                      +++||++|.|++++|+++.+.+.
T Consensus       142 ~~~SA~~~~~v~~l~~~l~~~~~  164 (165)
T 2wji_A          142 VPLSAAKKMGIEELKKAISIAVK  164 (165)
T ss_dssp             EECBGGGTBSHHHHHHHHHHHTT
T ss_pred             EEEEcCCCCCHHHHHHHHHHHhh
Confidence            99999999999999999998763

>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*

Probab=99.95  E-value=3.2e-28  Score=170.86  Aligned_cols=159  Identities=18%  Similarity=0.192  Sum_probs=108.1

Q ss_pred             CCCceeEEEEEcCCCCCHHHHHHHHhhCCCCCCCCCceeeeee-EEEEECCeEEEEEEEeCCC----------ccccccc
Q 036449            2 SASRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFS-ANVVVNGSTVNLGLWDTAG----------QEDYNRL   70 (197)
Q Consensus         2 ~~~~~~~i~v~G~~~~GKstli~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~i~D~~G----------~~~~~~~   70 (197)
                      +..+.++|+++|.+|+|||||++++.+..+...+.++.+.... .....++   .+.+|||||          ++.+...
T Consensus        19 ~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~l~Dt~G~~~~~~~~~~~~~~~~~   95 (195)
T 1svi_A           19 PEGGLPEIALAGRSNVGKSSFINSLINRKNLARTSSKPGKTQTLNFYIIND---ELHFVDVPGYGFAKVSKSEREAWGRM   95 (195)
T ss_dssp             CCSCCCEEEEEEBTTSSHHHHHHHHHTC-------------CCEEEEEETT---TEEEEECCCBCCCSSCHHHHHHHHHH
T ss_pred             CCCCCCEEEEECCCCCCHHHHHHHHhCCCCccccCCCCCceeeEEEEEECC---cEEEEECCCCCccccCHHHHHHHHHH
Confidence            4557799999999999999999999988765544444433332 2223333   477999999          6666666


Q ss_pred             cccCcCCC---cEEEEEEeCCCchhHHHHHHHHHHHHhhhCCCCCEEEEeeCCcccCCcccccCCCCCCcccH--HHHHH
Q 036449           71 RPLSYRGA---DVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPIST--AQGEE  145 (197)
Q Consensus        71 ~~~~~~~~---~~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~--~~~~~  145 (197)
                      +..++..+   |++++|+|++++.++...  .+...+..  .+.|+++|+||+|+.+...          +..  ++..+
T Consensus        96 ~~~~~~~~~~~~~~i~v~d~~~~~~~~~~--~~~~~~~~--~~~p~i~v~nK~Dl~~~~~----------~~~~~~~~~~  161 (195)
T 1svi_A           96 IETYITTREELKAVVQIVDLRHAPSNDDV--QMYEFLKY--YGIPVIVIATKADKIPKGK----------WDKHAKVVRQ  161 (195)
T ss_dssp             HHHHHHHCTTEEEEEEEEETTSCCCHHHH--HHHHHHHH--TTCCEEEEEECGGGSCGGG----------HHHHHHHHHH
T ss_pred             HHHHHhhhhcCCEEEEEEECCCCCCHHHH--HHHHHHHH--cCCCEEEEEECcccCChHH----------HHHHHHHHHH
Confidence            66666655   999999999998877764  33444444  3789999999999976442          211  22222


Q ss_pred             -HHHHhCCCceEEeccCCCCCHHHHHHHHHHHHc
Q 036449          146 -LRKLIGAPAYIECSSKTQQNVKAVFDAAIRVVL  178 (197)
Q Consensus       146 -~~~~~~~~~~~~~sa~~~~~i~~l~~~i~~~~~  178 (197)
                       ++...+. +++++||+++.|++++|++|.+.+.
T Consensus       162 ~~~~~~~~-~~~~~Sa~~~~gv~~l~~~l~~~l~  194 (195)
T 1svi_A          162 TLNIDPED-ELILFSSETKKGKDEAWGAIKKMIN  194 (195)
T ss_dssp             HHTCCTTS-EEEECCTTTCTTHHHHHHHHHHHHT
T ss_pred             HHcccCCC-ceEEEEccCCCCHHHHHHHHHHHhc
Confidence             2222234 8999999999999999999998764

>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}

Probab=99.95  E-value=8.2e-28  Score=163.66  Aligned_cols=150  Identities=22%  Similarity=0.184  Sum_probs=107.6

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhhCCCC--CCCCCceeeeeeEEEEECCeEEEEEEEeCCCcccc-------ccccccCcCC
Q 036449            7 IKCVTVGDGAVGKTCLLISYTSNTFP--TDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQEDY-------NRLRPLSYRG   77 (197)
Q Consensus         7 ~~i~v~G~~~~GKstli~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~-------~~~~~~~~~~   77 (197)
                      .||+++|.+|+|||||++++.+..+.  ..+.+++..........++.  .+.+||+||++.+       ...+..++..
T Consensus         2 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~   79 (161)
T 2dyk_A            2 HKVVIVGRPNVGKSSLFNRLLKKRSAVVADVPGVTRDLKEGVVETDRG--RFLLVDTGGLWSGDKWEKKIQEKVDRALED   79 (161)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHCCC-----------CCEEEEEEETTE--EEEEEECGGGCSSSSCCHHHHHHHHHHTTT
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCCeeeccCCCCceecceEEEEEeCCc--eEEEEECCCCCCccchHHHHHHHHHHHHHh
Confidence            68999999999999999999988743  33333334444555556664  6779999998863       3444567889


Q ss_pred             CcEEEEEEeCCCchhHHHHHHHHHHHHhhhCCCCCEEEEeeCCcccCCcccccCCCCCCcccHHHHHHHHHHhCCCceEE
Q 036449           78 ADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPISTAQGEELRKLIGAPAYIE  157 (197)
Q Consensus        78 ~~~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  157 (197)
                      +|++++|+|++++.+...  ..+...+...  +.|+++|+||+|+.+..              +++.+++ ..+..++++
T Consensus        80 ~~~~i~v~d~~~~~~~~~--~~~~~~~~~~--~~p~ilv~nK~Dl~~~~--------------~~~~~~~-~~~~~~~~~  140 (161)
T 2dyk_A           80 AEVVLFAVDGRAELTQAD--YEVAEYLRRK--GKPVILVATKVDDPKHE--------------LYLGPLY-GLGFGDPIP  140 (161)
T ss_dssp             CSEEEEEEESSSCCCHHH--HHHHHHHHHH--TCCEEEEEECCCSGGGG--------------GGCGGGG-GGSSCSCEE
T ss_pred             CCEEEEEEECCCcccHhH--HHHHHHHHhc--CCCEEEEEECcccccch--------------HhHHHHH-hCCCCCeEE
Confidence            999999999998755433  2334444443  78999999999996532              2223344 566657999


Q ss_pred             eccCCCCCHHHHHHHHHHHH
Q 036449          158 CSSKTQQNVKAVFDAAIRVV  177 (197)
Q Consensus       158 ~sa~~~~~i~~l~~~i~~~~  177 (197)
                      +||+++.|++++|++|.+.+
T Consensus       141 ~Sa~~~~gv~~l~~~l~~~l  160 (161)
T 2dyk_A          141 TSSEHARGLEELLEAIWERL  160 (161)
T ss_dssp             CBTTTTBSHHHHHHHHHHHC
T ss_pred             EecccCCChHHHHHHHHHhC
Confidence            99999999999999998865

>3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding, nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum tepidum}

Probab=99.95  E-value=2.6e-28  Score=195.22  Aligned_cols=166  Identities=23%  Similarity=0.294  Sum_probs=123.9

Q ss_pred             CCCceeEEEEEcCCCCCHHHHHHHHhhCCCCCCCCCceeeeeeEEE---------EECCeEEEEEEEeCCCccccccccc
Q 036449            2 SASRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANV---------VVNGSTVNLGLWDTAGQEDYNRLRP   72 (197)
Q Consensus         2 ~~~~~~~i~v~G~~~~GKstli~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~i~D~~G~~~~~~~~~   72 (197)
                      ...+.+||+++|.+|||||||++++.+..+...+.+|.+..+....         ..++..+.+.+||+||++.+...+.
T Consensus        37 ~~~~~~kV~lvG~~~vGKSSLl~~l~~~~~~~~~~~t~g~~~~~~~~~~~~~v~~~~~~~~~~~~i~Dt~G~e~~~~~~~  116 (535)
T 3dpu_A           37 VHLQEIKVHLIGDGMAGKTSLLKQLIGETFDPKESQTHGLNVVTKQAPNIKGLENDDELKECLFHFWDFGGQEIMHASHQ  116 (535)
T ss_dssp             BCCCEEEEEEESSSCSSHHHHHHHHHC-----------CCCEEEEEGGGSGGGTTCSTTTTCEEEEECCCSCCTTTTTCH
T ss_pred             ccccceEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceEEEEeccccccceeecCCCceEEEEEEECCcHHHHHHHHH
Confidence            4567799999999999999999999999888777777765544321         1123357889999999999999999


Q ss_pred             cCcCCCcEEEEEEeCCCchhHHHHHHHHHHHHhhhCCCCCEEEEeeCCcccCCcccccCCCCCCcccHHHHHHHHHHhCC
Q 036449           73 LSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPISTAQGEELRKLIGA  152 (197)
Q Consensus        73 ~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  152 (197)
                      .++.++|++|+|+|+++.+   .. ..|+..+....++.|+++|+||+|+.+...          +..++++.++...+.
T Consensus       117 ~~l~~~d~ii~V~D~s~~~---~~-~~~~~~l~~~~~~~pvilV~NK~Dl~~~~~----------v~~~~~~~~~~~~~~  182 (535)
T 3dpu_A          117 FFMTRSSVYMLLLDSRTDS---NK-HYWLRHIEKYGGKSPVIVVMNKIDENPSYN----------IEQKKINERFPAIEN  182 (535)
T ss_dssp             HHHHSSEEEEEEECGGGGG---GH-HHHHHHHHHHSSSCCEEEEECCTTTCTTCC----------CCHHHHHHHCGGGTT
T ss_pred             HHccCCcEEEEEEeCCCch---hH-HHHHHHHHHhCCCCCEEEEEECCCcccccc----------cCHHHHHHHHHhcCC
Confidence            9999999999999998763   44 678888888877899999999999976543          566777888888887


Q ss_pred             CceEEeccCCCCCHHHHHHHHHHHHcCCCc
Q 036449          153 PAYIECSSKTQQNVKAVFDAAIRVVLQPPK  182 (197)
Q Consensus       153 ~~~~~~sa~~~~~i~~l~~~i~~~~~~~~~  182 (197)
                       +++++||++|.|++++|+.|.+.+.....
T Consensus       183 -~~~~vSA~~g~gi~eL~~~l~~~~~~~~~  211 (535)
T 3dpu_A          183 -RFHRISCKNGDGVESIAKSLKSAVLHPDS  211 (535)
T ss_dssp             -CEEECCC-----CTTHHHHHHHHHTCTTS
T ss_pred             -ceEEEecCcccCHHHHHHHHHHHHhcccc
Confidence             89999999999999999999999887643

>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A

Probab=99.95  E-value=3.3e-28  Score=167.77  Aligned_cols=154  Identities=21%  Similarity=0.239  Sum_probs=112.4

Q ss_pred             ceeEEEEEcCCCCCHHHHHHHHhhCCC--CCCCCCceeeeeeEEEEECCeEEEEEEEeCCCcccccccc--------ccC
Q 036449            5 RFIKCVTVGDGAVGKTCLLISYTSNTF--PTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQEDYNRLR--------PLS   74 (197)
Q Consensus         5 ~~~~i~v~G~~~~GKstli~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~--------~~~   74 (197)
                      +.++|+++|.+|+|||||++++.+..+  ...+.+++.+.....+.+++.  .+.+|||||++.+....        ..+
T Consensus         3 ~~~ki~ivG~~g~GKStLl~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~l~Dt~G~~~~~~~~~~~~~~~~~~~   80 (172)
T 2gj8_A            3 HGMKVVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTRDVLREHIHIDGM--PLHIIDTAGLREASDEVERIGIERAWQE   80 (172)
T ss_dssp             -CEEEEEEESTTSSHHHHHHHHHTSCCSCCCSSTTCCCSCEEEEEEETTE--EEEEEECCCCSCCSSHHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCCcceeeCCCCceeceeeEEEEECCe--EEEEEECCCcccchhHHHHHHHHHHHHH
Confidence            458999999999999999999998754  334455555555666777774  47799999986542111        134


Q ss_pred             cCCCcEEEEEEeCCCchhHHHHHHHHHHHHhhhC-CCCCEEEEeeCCcccCCcccccCCCCCCcccHHHHHHHHHHhCCC
Q 036449           75 YRGADVFILAFSLISKASYENVSKKWIPELKHYA-PGVPIILVGTKLDLRDDKQFFIDHPGAVPISTAQGEELRKLIGAP  153 (197)
Q Consensus        75 ~~~~~~~i~v~d~~~~~s~~~~~~~~~~~i~~~~-~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  153 (197)
                      +..+|++++|+|++++.+++.  ..|+..+.... .+.|+++|+||+|+.+...           .      ++...+. 
T Consensus        81 ~~~ad~~i~v~D~~~~~s~~~--~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~~~-----------~------~~~~~~~-  140 (172)
T 2gj8_A           81 IEQADRVLFMVDGTTTDAVDP--AEIWPEFIARLPAKLPITVVRNKADITGETL-----------G------MSEVNGH-  140 (172)
T ss_dssp             HHTCSEEEEEEETTTCCCCSH--HHHCHHHHHHSCTTCCEEEEEECHHHHCCCC-----------E------EEEETTE-
T ss_pred             HHhCCEEEEEEECCCCCCHHH--HHHHHHHHHhcccCCCEEEEEECccCCcchh-----------h------hhhccCC-
Confidence            788999999999999988764  36666666554 4799999999999964321           0      0111344 


Q ss_pred             ceEEeccCCCCCHHHHHHHHHHHHcCC
Q 036449          154 AYIECSSKTQQNVKAVFDAAIRVVLQP  180 (197)
Q Consensus       154 ~~~~~sa~~~~~i~~l~~~i~~~~~~~  180 (197)
                      +++++||+++.|++++|++|.+.+...
T Consensus       141 ~~~~~SA~~g~gv~~l~~~l~~~~~~~  167 (172)
T 2gj8_A          141 ALIRLSARTGEGVDVLRNHLKQSMGFD  167 (172)
T ss_dssp             EEEECCTTTCTTHHHHHHHHHHHC---
T ss_pred             ceEEEeCCCCCCHHHHHHHHHHHhhhc
Confidence            799999999999999999999876543

>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A

Probab=99.95  E-value=2.6e-27  Score=166.03  Aligned_cols=163  Identities=17%  Similarity=0.135  Sum_probs=114.2

Q ss_pred             CCCceeEEEEEcCCCCCHHHHHHHHhhCCCCCCCCCceeeeeeEEEEECCeEEEEEEEeCCC----------cccccccc
Q 036449            2 SASRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWDTAG----------QEDYNRLR   71 (197)
Q Consensus         2 ~~~~~~~i~v~G~~~~GKstli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G----------~~~~~~~~   71 (197)
                      +.+..++|+++|.+|+|||||++++.+..+. ...++.+..........+  ..+.+||+||          ++.+...+
T Consensus        19 ~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~-~~~~~~~~t~~~~~~~~~--~~~~i~Dt~G~~~~~~~~~~~~~~~~~~   95 (195)
T 3pqc_A           19 PPPLKGEVAFVGRSNVGKSSLLNALFNRKIA-FVSKTPGKTRSINFYLVN--SKYYFVDLPGYGYAKVSKKERMLWKRLV   95 (195)
T ss_dssp             CCCTTCEEEEEEBTTSSHHHHHHHHHTSCCS-CCCSSCCCCCCEEEEEET--TTEEEEECCCBSSSCCCHHHHHHHHHHH
T ss_pred             CCCCCeEEEEECCCCCCHHHHHHHHHcCccc-cccCCCCCccCeEEEEEC--CcEEEEECCCCccccCChhhHHHHHHHH
Confidence            3456689999999999999999999988743 233333323322222222  2366999999          55566666


Q ss_pred             ccCcCCC---cEEEEEEeCCCchhHHHHHHHHHHHHhhhCCCCCEEEEeeCCcccCCcccccCCCCCCcccHHHHHHHHH
Q 036449           72 PLSYRGA---DVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPISTAQGEELRK  148 (197)
Q Consensus        72 ~~~~~~~---~~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~  148 (197)
                      ..++..+   +++++|+|.+++.+....  .+...+...  +.|+++|+||+|+.+...        .....+++..++.
T Consensus        96 ~~~~~~~~~~~~vi~v~d~~~~~~~~~~--~~~~~~~~~--~~p~i~v~nK~Dl~~~~~--------~~~~~~~~~~~~~  163 (195)
T 3pqc_A           96 EDYFKNRWSLQMVFLLVDGRIPPQDSDL--MMVEWMKSL--NIPFTIVLTKMDKVKMSE--------RAKKLEEHRKVFS  163 (195)
T ss_dssp             HHHHHHCTTEEEEEEEEETTSCCCHHHH--HHHHHHHHT--TCCEEEEEECGGGSCGGG--------HHHHHHHHHHHHH
T ss_pred             HHHHhcCcCceEEEEEecCCCCCCHHHH--HHHHHHHHc--CCCEEEEEEChhcCChHH--------HHHHHHHHHHHHh
Confidence            6555554   999999999887554433  333444444  789999999999975332        1134455667777


Q ss_pred             HhCCCceEEeccCCCCCHHHHHHHHHHHHcC
Q 036449          149 LIGAPAYIECSSKTQQNVKAVFDAAIRVVLQ  179 (197)
Q Consensus       149 ~~~~~~~~~~sa~~~~~i~~l~~~i~~~~~~  179 (197)
                      ..+..+++++||+++.|++++|++|.+.+.+
T Consensus       164 ~~~~~~~~~~Sa~~~~gv~~l~~~l~~~l~~  194 (195)
T 3pqc_A          164 KYGEYTIIPTSSVTGEGISELLDLISTLLKE  194 (195)
T ss_dssp             SSCCSCEEECCTTTCTTHHHHHHHHHHHHC-
T ss_pred             hcCCCceEEEecCCCCCHHHHHHHHHHHhhc
Confidence            6565589999999999999999999998754

>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*

Probab=99.95  E-value=8.3e-27  Score=174.48  Aligned_cols=165  Identities=15%  Similarity=0.126  Sum_probs=126.7

Q ss_pred             CCCceeEEEEEcCCCCCHHHHHHHHhhCCCCC--CCCCceeeeeeEEEEECCeEEEEEEEeCCCccccc----------c
Q 036449            2 SASRFIKCVTVGDGAVGKTCLLISYTSNTFPT--DYVPTVFDNFSANVVVNGSTVNLGLWDTAGQEDYN----------R   69 (197)
Q Consensus         2 ~~~~~~~i~v~G~~~~GKstli~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~----------~   69 (197)
                      ++++.-.|+++|.+|||||||++++++..+..  ....++..........+ ....+.+|||||+..+.          .
T Consensus         6 ~~~~~g~v~ivG~~nvGKSTLin~l~g~~~~i~s~~~~tT~~~~~~~~~~~-~~~~i~lvDTPG~~~~~~~~~l~~~~~~   84 (308)
T 3iev_A            6 HHMKVGYVAIVGKPNVGKSTLLNNLLGTKVSIISPKAGTTRMRVLGVKNIP-NEAQIIFLDTPGIYEPKKSDVLGHSMVE   84 (308)
T ss_dssp             -CCEEEEEEEECSTTSSHHHHHHHHHTSCCSCCCSSSCCCCSCEEEEEEET-TTEEEEEEECCCCCCCCTTCHHHHHHHH
T ss_pred             CCCCCCEEEEECCCCCcHHHHHHHHhCCCccccCCCCCceeeEEEEEEecC-CCCeEEEEECcCCCccccchhHHHHHHH
Confidence            45677899999999999999999999987642  33334433333344444 13678899999986544          4


Q ss_pred             ccccCcCCCcEEEEEEeCCCchhHHHHHHHHHHHHhhhCCCCCEEEEeeCCcccCCcccccCCCCCCcccHHHHHHHHHH
Q 036449           70 LRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPISTAQGEELRKL  149 (197)
Q Consensus        70 ~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~  149 (197)
                      ....++..+|++++|+|++++.+..+. ..|+..+...  +.|+++|+||+|+.....          ...+....+.+.
T Consensus        85 ~~~~~l~~aD~il~VvD~~~~~~~~~~-~~~~~~l~~~--~~pvilV~NK~Dl~~~~~----------~~~~~~~~l~~~  151 (308)
T 3iev_A           85 IAKQSLEEADVILFMIDATEGWRPRDE-EIYQNFIKPL--NKPVIVVINKIDKIGPAK----------NVLPLIDEIHKK  151 (308)
T ss_dssp             HHHHHHHHCSEEEEEEETTTBSCHHHH-HHHHHHTGGG--CCCEEEEEECGGGSSSGG----------GGHHHHHHHHHH
T ss_pred             HHHHHhhcCCEEEEEEeCCCCCCchhH-HHHHHHHHhc--CCCEEEEEECccCCCCHH----------HHHHHHHHHHHh
Confidence            455677889999999999999888876 5667777775  799999999999973322          345666777777


Q ss_pred             hC-CCceEEeccCCCCCHHHHHHHHHHHHcCC
Q 036449          150 IG-APAYIECSSKTQQNVKAVFDAAIRVVLQP  180 (197)
Q Consensus       150 ~~-~~~~~~~sa~~~~~i~~l~~~i~~~~~~~  180 (197)
                      ++ ..+++++||++|.|++++|+.|.+.+...
T Consensus       152 ~~~~~~i~~vSA~~g~gv~~L~~~l~~~l~~~  183 (308)
T 3iev_A          152 HPELTEIVPISALKGANLDELVKTILKYLPEG  183 (308)
T ss_dssp             CTTCCCEEECBTTTTBSHHHHHHHHHHHSCBC
T ss_pred             ccCCCeEEEEeCCCCCCHHHHHHHHHHhCccC
Confidence            74 44899999999999999999999988654

>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}

Probab=99.95  E-value=1.8e-27  Score=166.08  Aligned_cols=160  Identities=16%  Similarity=0.188  Sum_probs=118.3

Q ss_pred             CCCceeEEEEEcCCCCCHHHHHHHHhhCCCCCCCCCc-eeeeeeEEEEECCeEEEEEEEeCCCccccc------cccccC
Q 036449            2 SASRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPT-VFDNFSANVVVNGSTVNLGLWDTAGQEDYN------RLRPLS   74 (197)
Q Consensus         2 ~~~~~~~i~v~G~~~~GKstli~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~------~~~~~~   74 (197)
                      ++.+.++|+++|++|||||||++++.+..+.....++ +.......+..++  ..+.+|||||++.+.      .++..+
T Consensus         3 ~~~~~~~i~lvG~~gvGKStL~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~l~Dt~G~~~~~~~~~~~~~~~~~   80 (188)
T 2wjg_A            3 SHMKSYEIALIGNPNVGKSTIFNALTGENVYIGNWPGVTVEKKEGEFEYNG--EKFKVVDLPGVYSLTANSIDEIIARDY   80 (188)
T ss_dssp             CCCCEEEEEEECSTTSSHHHHHHHHHTTCEEEEECTTSCCEEEEEEEEETT--EEEEEEECCCCSCCSSSSHHHHHHHHH
T ss_pred             CCCCCCEEEEECCCCCCHHHHHHHHhCCCccccCCCCeeccceEEEEEeCC--cEEEEEECCCcCccccccHHHHHHHHH
Confidence            3456799999999999999999999986543322233 2333344455555  678899999998774      234444


Q ss_pred             cC--CCcEEEEEEeCCCchhHHHHHHHHHHHHhhhCCCCCEEEEeeCCcccCCcccccCCCCCCcccHHHHHHHHHHhCC
Q 036449           75 YR--GADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPISTAQGEELRKLIGA  152 (197)
Q Consensus        75 ~~--~~~~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  152 (197)
                      +.  .++++++|+|.++.   +.. ..|+..+...  +.|+++|+||+|+.....          +. .++..+++..+.
T Consensus        81 ~~~~~~~~~i~v~d~~~~---~~~-~~~~~~~~~~--~~piilv~nK~Dl~~~~~----------~~-~~~~~~~~~~~~  143 (188)
T 2wjg_A           81 IINEKPDLVVNIVDATAL---ERN-LYLTLQLMEM--GANLLLALNKMDLAKSLG----------IE-IDVDKLEKILGV  143 (188)
T ss_dssp             HHHHCCSEEEEEEEGGGH---HHH-HHHHHHHHTT--TCCEEEEEECHHHHHHTT----------CC-CCHHHHHHHHTS
T ss_pred             HhccCCCEEEEEecchhH---HHH-HHHHHHHHhc--CCCEEEEEEhhhcccccc----------ch-HHHHHHHHHhCC
Confidence            43  58999999998763   444 4566666553  789999999999965432          22 345778888887


Q ss_pred             CceEEeccCCCCCHHHHHHHHHHHHcCCC
Q 036449          153 PAYIECSSKTQQNVKAVFDAAIRVVLQPP  181 (197)
Q Consensus       153 ~~~~~~sa~~~~~i~~l~~~i~~~~~~~~  181 (197)
                       +++++||+++.|++++|+++.+.+....
T Consensus       144 -~~~~~Sa~~~~~v~~l~~~i~~~~~~~~  171 (188)
T 2wjg_A          144 -KVVPLSAAKKMGIEELKKAISIAVKDKK  171 (188)
T ss_dssp             -CEEECBGGGTBSHHHHHHHHHHHHTTC-
T ss_pred             -CeEEEEecCCCCHHHHHHHHHHHHHhcc
Confidence             8999999999999999999999987765

>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8

Probab=99.95  E-value=3.9e-28  Score=169.64  Aligned_cols=158  Identities=18%  Similarity=0.214  Sum_probs=116.5

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhhCCCCCCCCCceeeeeeEEEEECCeEEEEEEEeCCC-----------ccccccccccCc
Q 036449            7 IKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWDTAG-----------QEDYNRLRPLSY   75 (197)
Q Consensus         7 ~~i~v~G~~~~GKstli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G-----------~~~~~~~~~~~~   75 (197)
                      ++|+++|.+|||||||++++.+..+...+.++... ........    .+.+||+||           ++.+...+..++
T Consensus         2 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~t~-~~~~~~~~----~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~   76 (190)
T 2cxx_A            2 ATIIFAGRSNVGKSTLIYRLTGKKVRRGKRPGVTR-KIIEIEWK----NHKIIDMPGFGFMMGLPKEVQERIKDEIVHFI   76 (190)
T ss_dssp             CEEEEEEBTTSSHHHHHHHHHSCCCSSSSSTTCTT-SCEEEEET----TEEEEECCCBSCCTTSCHHHHHHHHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHHhCcCCccCCCCCccc-eeEEEecC----CEEEEECCCccccccCCHHHHHHHHHHHHHHH
Confidence            69999999999999999999998877665554421 12222333    477999999           566666666677


Q ss_pred             CC-CcEEEEEEeCCCchhHHHHHHHHHHH---------Hhhh-CCCCCEEEEeeCCcccCCcccccCCCCCCcccHHHHH
Q 036449           76 RG-ADVFILAFSLISKASYENVSKKWIPE---------LKHY-APGVPIILVGTKLDLRDDKQFFIDHPGAVPISTAQGE  144 (197)
Q Consensus        76 ~~-~~~~i~v~d~~~~~s~~~~~~~~~~~---------i~~~-~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~  144 (197)
                      .. ++++++++++.+..++..+...|...         +... .++.|+++|+||+|+....             .+++.
T Consensus        77 ~~~~~~~~~v~~v~d~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~-------------~~~~~  143 (190)
T 2cxx_A           77 EDNAKNIDVAVLVVDGKAAPEIIKRWEKRGEIPIDVEFYQFLRELDIPTIVAVNKLDKIKNV-------------QEVIN  143 (190)
T ss_dssp             HHHGGGCCEEEEEEETTHHHHHHHHHHHTTCCCHHHHHHHHHHHTTCCEEEEEECGGGCSCH-------------HHHHH
T ss_pred             HhhhccCCEEEEEEcchhhhhHHHhhhccCccHHHHHHHHHHHhcCCceEEEeehHhccCcH-------------HHHHH
Confidence            66 77777777777778877764555432         1111 1479999999999996532             45677


Q ss_pred             HHHHHhCCC------ceEEeccCCCCCHHHHHHHHHHHHcCCCc
Q 036449          145 ELRKLIGAP------AYIECSSKTQQNVKAVFDAAIRVVLQPPK  182 (197)
Q Consensus       145 ~~~~~~~~~------~~~~~sa~~~~~i~~l~~~i~~~~~~~~~  182 (197)
                      .+++.++..      +++++||++|.|++++|++|.+.+.+.++
T Consensus       144 ~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~~~~~~~  187 (190)
T 2cxx_A          144 FLAEKFEVPLSEIDKVFIPISAKFGDNIERLKNRIFEVIRERQG  187 (190)
T ss_dssp             HHHHHHTCCGGGHHHHEEECCTTTCTTHHHHHHHHHHHHHHC--
T ss_pred             HHHHHhhhhhhccCCcEEEEecCCCCCHHHHHHHHHHhcchhhc
Confidence            888888873      36999999999999999999998865543

>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A

Probab=99.95  E-value=8.1e-27  Score=170.36  Aligned_cols=155  Identities=18%  Similarity=0.187  Sum_probs=117.2

Q ss_pred             CceeEEEEEcCCCCCHHHHHHHHhhCCCC-CCCCCceeeeeeEEEEECCeEEEEEEEeCCCcccccccc------ccCc-
Q 036449            4 SRFIKCVTVGDGAVGKTCLLISYTSNTFP-TDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQEDYNRLR------PLSY-   75 (197)
Q Consensus         4 ~~~~~i~v~G~~~~GKstli~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~------~~~~-   75 (197)
                      .+.++|+++|.+|+|||||++++.+..+. ..+++++.......+...+  ..+.+||+||+..+...+      ..++ 
T Consensus         3 ~~~~kI~lvG~~nvGKTsL~n~l~g~~~~~~~~pg~tv~~~~~~~~~~~--~~~~l~DtpG~~~~~~~~~~e~v~~~~~~   80 (258)
T 3a1s_A            3 LHMVKVALAGCPNVGKTSLFNALTGTKQYVANWPGVTVEKKEGVFTYKG--YTINLIDLPGTYSLGYSSIDEKIARDYLL   80 (258)
T ss_dssp             CEEEEEEEECCTTSSHHHHHHHHHTTCEEEEECTTSCCEEEEEEEEETT--EEEEEEECCCCSSCCSSSHHHHHHHHHHH
T ss_pred             CCceEEEEECCCCCCHHHHHHHHHCCCCcccCCCCceEEEEEEEEEECC--eEEEEEECCCcCccCCCCHHHHHHHHHHh
Confidence            46799999999999999999999987653 3333333333334444444  678899999998776533      3444 


Q ss_pred             -CCCcEEEEEEeCCCchhHHHHHHHHHHHHhhhCCCCCEEEEeeCCcccCCcccccCCCCCCcccHHHHHHHHHHhCCCc
Q 036449           76 -RGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPISTAQGEELRKLIGAPA  154 (197)
Q Consensus        76 -~~~~~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  154 (197)
                       ..+|++++|+|+++.++..    .|...+...  +.|+++|+||+|+...+.          +. .+...+++.+++ +
T Consensus        81 ~~~~d~ii~V~D~t~~~~~~----~~~~~l~~~--~~pvilv~NK~Dl~~~~~----------i~-~~~~~l~~~lg~-~  142 (258)
T 3a1s_A           81 KGDADLVILVADSVNPEQSL----YLLLEILEM--EKKVILAMTAIDEAKKTG----------MK-IDRYELQKHLGI-P  142 (258)
T ss_dssp             HSCCSEEEEEEETTSCHHHH----HHHHHHHTT--TCCEEEEEECHHHHHHTT----------CC-BCHHHHHHHHCS-C
T ss_pred             hcCCCEEEEEeCCCchhhHH----HHHHHHHhc--CCCEEEEEECcCCCCccc----------hH-HHHHHHHHHcCC-C
Confidence             5899999999999876543    344555444  799999999999965433          22 236778888998 8


Q ss_pred             eEEeccCCCCCHHHHHHHHHHHHc
Q 036449          155 YIECSSKTQQNVKAVFDAAIRVVL  178 (197)
Q Consensus       155 ~~~~sa~~~~~i~~l~~~i~~~~~  178 (197)
                      ++++||++|.|++++|+++.+.+.
T Consensus       143 vi~~SA~~g~gi~el~~~i~~~~~  166 (258)
T 3a1s_A          143 VVFTSSVTGEGLEELKEKIVEYAQ  166 (258)
T ss_dssp             EEECCTTTCTTHHHHHHHHHHHHH
T ss_pred             EEEEEeeCCcCHHHHHHHHHHHhh
Confidence            999999999999999999999875

>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1

Probab=99.94  E-value=9.2e-26  Score=168.06  Aligned_cols=161  Identities=17%  Similarity=0.140  Sum_probs=113.7

Q ss_pred             CCC-CceeEEEEEcCCCCCHHHHHHHHhhCCCCC--CCCCceeeeeeEEEEECCeEEEEEEEeCCCccc--------ccc
Q 036449            1 MSA-SRFIKCVTVGDGAVGKTCLLISYTSNTFPT--DYVPTVFDNFSANVVVNGSTVNLGLWDTAGQED--------YNR   69 (197)
Q Consensus         1 m~~-~~~~~i~v~G~~~~GKstli~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~--------~~~   69 (197)
                      |++ .+..+|+++|.+|+|||||++++++..+..  ..+.|+..........++  .++.+|||||+..        +..
T Consensus         1 m~~~~~~g~V~ivG~~nvGKSTLln~l~g~~~~ivs~~~~tTr~~i~~i~~~~~--~~l~l~DTpG~~~~~~~l~~~~~~   78 (301)
T 1wf3_A            1 MAEKTYSGFVAIVGKPNVGKSTLLNNLLGVKVAPISPRPQTTRKRLRGILTEGR--RQIVFVDTPGLHKPMDALGEFMDQ   78 (301)
T ss_dssp             --CCCEEEEEEEECSTTSSHHHHHHHHHTSCCSCCCSSSCCCCSCEEEEEEETT--EEEEEEECCCCCCCCSHHHHHHHH
T ss_pred             CCCCccCCEEEEECCCCCCHHHHHHHHhCCceeeecCCCCceeEEEEEEEEeCC--cEEEEecCccccchhhHHHHHHHH
Confidence            544 356789999999999999999999887642  223344333333333344  6788999999875        334


Q ss_pred             ccccCcCCCcEEEEEEeCCCchhHHHHHHHHHHHHhhhCCCCCEEEEeeCCcccCCcccccCCCCCCcccHHHHHHHHHH
Q 036449           70 LRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPISTAQGEELRKL  149 (197)
Q Consensus        70 ~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~  149 (197)
                      ....++..+|++++|+|++++.+..+  ..+...+....++.|+++|+||+|+.....             + .....+.
T Consensus        79 ~~~~~l~~ad~il~VvD~~~~~~~~~--~~i~~~l~~~~~~~p~ilV~NK~Dl~~~~~-------------~-~~~~~~~  142 (301)
T 1wf3_A           79 EVYEALADVNAVVWVVDLRHPPTPED--ELVARALKPLVGKVPILLVGNKLDAAKYPE-------------E-AMKAYHE  142 (301)
T ss_dssp             HHHHHTSSCSEEEEEEETTSCCCHHH--HHHHHHHGGGTTTSCEEEEEECGGGCSSHH-------------H-HHHHHHH
T ss_pred             HHHHHHhcCCEEEEEEECCCCCChHH--HHHHHHHHhhcCCCCEEEEEECcccCCchH-------------H-HHHHHHH
Confidence            45567889999999999998765543  344566665556799999999999965321             0 1222222


Q ss_pred             -hCCCceEEeccCCCCCHHHHHHHHHHHHcC
Q 036449          150 -IGAPAYIECSSKTQQNVKAVFDAAIRVVLQ  179 (197)
Q Consensus       150 -~~~~~~~~~sa~~~~~i~~l~~~i~~~~~~  179 (197)
                       .+..+++++||++|.|++++++.|.+.+..
T Consensus       143 ~~~~~~~~~iSA~~g~gv~~l~~~l~~~l~~  173 (301)
T 1wf3_A          143 LLPEAEPRMLSALDERQVAELKADLLALMPE  173 (301)
T ss_dssp             TSTTSEEEECCTTCHHHHHHHHHHHHTTCCB
T ss_pred             hcCcCcEEEEeCCCCCCHHHHHHHHHHhccc
Confidence             343478999999999999999999987643

>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*

Probab=99.94  E-value=1.1e-26  Score=170.69  Aligned_cols=154  Identities=16%  Similarity=0.178  Sum_probs=112.7

Q ss_pred             ceeEEEEEcCCCCCHHHHHHHHhhCC-CCCCCCCceeeeeeEEEEECCeEEEEEEEeCCCccccc------cccccCcC-
Q 036449            5 RFIKCVTVGDGAVGKTCLLISYTSNT-FPTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQEDYN------RLRPLSYR-   76 (197)
Q Consensus         5 ~~~~i~v~G~~~~GKstli~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~------~~~~~~~~-   76 (197)
                      ..++|+++|.+|||||||++++.+.. ...++++++....  ...+.. ...+.+||+||+..+.      .+...++. 
T Consensus         2 ~~~kI~lvG~~nvGKSTL~n~L~g~~~~v~~~pg~tv~~~--~~~~~~-~~~l~l~DtpG~~~~~~~~~~e~v~~~~~~~   78 (272)
T 3b1v_A            2 SMTEIALIGNPNSGKTSLFNLITGHNQRVGNWPGVTVERK--SGLVKK-NKDLEIQDLPGIYSMSPYSPEAKVARDYLLS   78 (272)
T ss_dssp             -CEEEEEECCTTSSHHHHHHHHHCCCCCCCSSSCCCCSCE--EEECTT-CTTEEEEECCCCSCSSCSSHHHHHHHHHHHT
T ss_pred             CceEEEEECCCCCCHHHHHHHHHCCCCcccCCCCCcEEEE--EEEEec-CCeEEEEECCCcCccCCCChHHHHHHHHHhc
Confidence            45899999999999999999999865 3444443332222  222333 4568899999998775      23344443 


Q ss_pred             -CCcEEEEEEeCCCchhHHHHHHHHHHHHhhhCCCCCEEEEeeCCcccCCcccccCCCCCCcccHHHHHHHHHHhCCCce
Q 036449           77 -GADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPISTAQGEELRKLIGAPAY  155 (197)
Q Consensus        77 -~~~~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  155 (197)
                       .+|++++|+|+++.++..    .|...+...  +.|+++|+||+|+.....          +. .+...+++.+++ ++
T Consensus        79 ~~~d~vi~V~D~t~~e~~~----~~~~~l~~~--~~p~ilv~NK~Dl~~~~~----------~~-~~~~~l~~~lg~-~v  140 (272)
T 3b1v_A           79 QRADSILNVVDATNLERNL----YLTTQLIET--GIPVTIALNMIDVLDGQG----------KK-INVDKLSYHLGV-PV  140 (272)
T ss_dssp             TCCSEEEEEEEGGGHHHHH----HHHHHHHHT--CSCEEEEEECHHHHHHTT----------CC-CCHHHHHHHHTS-CE
T ss_pred             CCCCEEEEEecCCchHhHH----HHHHHHHhc--CCCEEEEEEChhhCCcCC----------cH-HHHHHHHHHcCC-CE
Confidence             699999999999865442    444555443  799999999999965432          22 345678888888 89


Q ss_pred             EEeccCCCCCHHHHHHHHHHHHcC
Q 036449          156 IECSSKTQQNVKAVFDAAIRVVLQ  179 (197)
Q Consensus       156 ~~~sa~~~~~i~~l~~~i~~~~~~  179 (197)
                      +++||++|.|++++|+++.+.+..
T Consensus       141 i~~SA~~g~gi~el~~~i~~~~~~  164 (272)
T 3b1v_A          141 VATSALKQTGVDQVVKKAAHTTTS  164 (272)
T ss_dssp             EECBTTTTBSHHHHHHHHHHSCTT
T ss_pred             EEEEccCCCCHHHHHHHHHHHHhh
Confidence            999999999999999999987643

>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}

Probab=99.93  E-value=4.7e-26  Score=163.07  Aligned_cols=166  Identities=11%  Similarity=0.015  Sum_probs=108.5

Q ss_pred             CCceeEEEEEcCCCCCHHHHHHHHhhCCC---CCCCCCceeeeeeEEEEEC-CeEEEEEEEeCCCc----------cccc
Q 036449            3 ASRFIKCVTVGDGAVGKTCLLISYTSNTF---PTDYVPTVFDNFSANVVVN-GSTVNLGLWDTAGQ----------EDYN   68 (197)
Q Consensus         3 ~~~~~~i~v~G~~~~GKstli~~~~~~~~---~~~~~~~~~~~~~~~~~~~-~~~~~~~i~D~~G~----------~~~~   68 (197)
                      ....++|+++|.+|+|||||++++.+...   .....+++...  ....+. .....+.+|||||.          +.+.
T Consensus        26 ~~~~~~i~v~G~~~~GKSslin~l~~~~~~~~~~~~~~~t~~~--~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~  103 (223)
T 4dhe_A           26 PTVQPEIAFAGRSNAGKSTAINVLCNQKRLAFASKTPGRTQHI--NYFSVGPAAEPVAHLVDLPGYGYAEVPGAAKAHWE  103 (223)
T ss_dssp             CCCSCEEEEEESCHHHHHHHHHHHTTCSSSSCTTCCCCSCCCE--EEEEESCTTSCSEEEEECCCCCSSCCCSTHHHHHH
T ss_pred             CCCCCEEEEEcCCCCCHHHHHHHHhCCCcceeecCCCCcccce--EEEEecCCCCCcEEEEcCCCCCcccCChhhHHHHH
Confidence            45678999999999999999999998762   22222222211  122222 22356789999994          2333


Q ss_pred             cccccCcC---CCcEEEEEEeCCCchhHHHHHHHHHHHHhhhCCCCCEEEEeeCCcccCCcccccCCCCCCcccHHHHHH
Q 036449           69 RLRPLSYR---GADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPISTAQGEE  145 (197)
Q Consensus        69 ~~~~~~~~---~~~~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~  145 (197)
                      .....++.   .+|++++|+|.+++.+...  ..++..+...  +.|+++|+||+|+......        ....+...+
T Consensus       104 ~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~--~~~~~~l~~~--~~p~i~v~nK~Dl~~~~~~--------~~~~~~~~~  171 (223)
T 4dhe_A          104 QLLSSYLQTRPQLCGMILMMDARRPLTELD--RRMIEWFAPT--GKPIHSLLTKCDKLTRQES--------INALRATQK  171 (223)
T ss_dssp             HHHHHHHHHCTTEEEEEEEEETTSCCCHHH--HHHHHHHGGG--CCCEEEEEECGGGSCHHHH--------HHHHHHHHH
T ss_pred             HHHHHHHhcCcCcCEEEEEEeCCCCCCHHH--HHHHHHHHhc--CCCEEEEEeccccCChhhH--------HHHHHHHHH
Confidence            33334443   3788999999998655433  3566667664  7899999999999764320        001122222


Q ss_pred             HHHHh------CCCceEEeccCCCCCHHHHHHHHHHHHcCCCc
Q 036449          146 LRKLI------GAPAYIECSSKTQQNVKAVFDAAIRVVLQPPK  182 (197)
Q Consensus       146 ~~~~~------~~~~~~~~sa~~~~~i~~l~~~i~~~~~~~~~  182 (197)
                      ....+      ...+++++||++|.|++++|++|.+.+.....
T Consensus       172 ~l~~~~~~~~~~~~~~~~~SA~~g~gv~~l~~~l~~~~~~~~~  214 (223)
T 4dhe_A          172 SLDAYRDAGYAGKLTVQLFSALKRTGLDDAHALIESWLRPAAA  214 (223)
T ss_dssp             HHHHHHHHTCCSCEEEEEEBTTTTBSHHHHHHHHHHHHC----
T ss_pred             HHHhhhhcccCCCCeEEEeecCCCcCHHHHHHHHHHhcCccCC
Confidence            22332      33379999999999999999999998876543

>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}

Probab=99.93  E-value=1e-25  Score=164.25  Aligned_cols=150  Identities=15%  Similarity=0.235  Sum_probs=112.9

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhhCCCC-CCCCCceeeeeeEEEEECCeEEEEEEEeCCCcccccc----------ccccCc
Q 036449            7 IKCVTVGDGAVGKTCLLISYTSNTFP-TDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQEDYNR----------LRPLSY   75 (197)
Q Consensus         7 ~~i~v~G~~~~GKstli~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~----------~~~~~~   75 (197)
                      .+|+++|.+|||||||++++.+.... ..+++++.+.....+.+++.  .+.+|||||+..+..          ....++
T Consensus         2 ~kI~lvG~~n~GKSTL~n~L~g~~~~v~~~pg~Tv~~~~~~~~~~~~--~~~lvDtpG~~~~~~~~~~~~~~e~i~~~~~   79 (256)
T 3iby_A            2 THALLIGNPNCGKTTLFNALTNANQRVGNWPGVTVEKKTGEFLLGEH--LIEITDLPGVYSLVANAEGISQDEQIAAQSV   79 (256)
T ss_dssp             CEEEEEESTTSSHHHHHHHHHTTSEEEEECTTSSSEEEEEEEEETTE--EEEEEECCCCSSCC------CHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHCCCCCccCCCCceEEEEEEEEEECCe--EEEEEeCCCcccccccccCCCHHHHHHHHHH
Confidence            48999999999999999999987543 33344444455556666664  678999999987764          334455


Q ss_pred             --CCCcEEEEEEeCCCchhHHHHHHHHHHHHhhhCCCCCEEEEeeCCcccCCcccccCCCCCCcccHHHHHHHHHHhCCC
Q 036449           76 --RGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPISTAQGEELRKLIGAP  153 (197)
Q Consensus        76 --~~~~~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  153 (197)
                        .++|++|+|+|+++.++...+    ...+...  +.|+++|+||+|+.+...          . ......+++..+. 
T Consensus        80 ~~~~~d~vi~VvDas~~~~~~~l----~~~l~~~--~~pvilv~NK~Dl~~~~~----------~-~~~~~~l~~~lg~-  141 (256)
T 3iby_A           80 IDLEYDCIINVIDACHLERHLYL----TSQLFEL--GKPVVVALNMMDIAEHRG----------I-SIDTEKLESLLGC-  141 (256)
T ss_dssp             HHSCCSEEEEEEEGGGHHHHHHH----HHHHTTS--CSCEEEEEECHHHHHHTT----------C-EECHHHHHHHHCS-
T ss_pred             hhCCCCEEEEEeeCCCchhHHHH----HHHHHHc--CCCEEEEEEChhcCCcCC----------c-HHHHHHHHHHcCC-
Confidence              789999999999986554433    3444444  799999999999975432          1 1224567788887 


Q ss_pred             ceEEeccCCCCCHHHHHHHHHHH
Q 036449          154 AYIECSSKTQQNVKAVFDAAIRV  176 (197)
Q Consensus       154 ~~~~~sa~~~~~i~~l~~~i~~~  176 (197)
                      +++++||++|.|++++|++|.+.
T Consensus       142 ~vi~~SA~~g~gi~el~~~i~~~  164 (256)
T 3iby_A          142 SVIPIQAHKNIGIPALQQSLLHC  164 (256)
T ss_dssp             CEEECBGGGTBSHHHHHHHHHTC
T ss_pred             CEEEEECCCCCCHHHHHHHHHhh
Confidence            89999999999999999999887

>3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP- binding, hydrolase, magnesium, metal-binding, nucleotide- binding, potassium; HET: GDP FON; 2.95A {Chlorobium tepidum} PDB: 3gei_A*

Probab=99.93  E-value=6.6e-25  Score=172.23  Aligned_cols=156  Identities=16%  Similarity=0.147  Sum_probs=99.6

Q ss_pred             ceeEEEEEcCCCCCHHHHHHHHhhCC--CCCCCCCceeeeeeEEEEECCeEEEEEEEeCCCcccccccc--------ccC
Q 036449            5 RFIKCVTVGDGAVGKTCLLISYTSNT--FPTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQEDYNRLR--------PLS   74 (197)
Q Consensus         5 ~~~~i~v~G~~~~GKstli~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~--------~~~   74 (197)
                      ..++|+++|.+|+|||||++++.+..  +...+.+++.+.....+.+++  +.+.+|||||+..+...+        ..+
T Consensus       232 ~~~kV~ivG~~nvGKSSLln~L~~~~~a~vs~~~gtT~d~~~~~i~~~g--~~l~liDT~G~~~~~~~ve~~gi~~~~~~  309 (476)
T 3gee_A          232 EGVSTVIAGKPNAGKSTLLNTLLGQERAIVSHMPGTTRDYIEECFIHDK--TMFRLTDTAGLREAGEEIEHEGIRRSRMK  309 (476)
T ss_dssp             HCEEEEEECCTTSSHHHHHHHCC------------------CEEEEETT--EEEEEEC--------------------CC
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCceEEEEEEEEEECC--eEEEEEECCCCCcchhHHHHHHHHHHHhh
Confidence            34889999999999999999999874  345556666666666777777  568899999987765433        346


Q ss_pred             cCCCcEEEEEEeCCCchhHHHHHHHHHHHHhhhCCCCCEEEEeeCCcccCCcccccCCCCCCcccHHHHHHHHHHhCCCc
Q 036449           75 YRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPISTAQGEELRKLIGAPA  154 (197)
Q Consensus        75 ~~~~~~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  154 (197)
                      +..+|++++|+|++++.+++.. ..+...+... ++.|+++|+||+|+.+...          .   ....+.+... .+
T Consensus       310 ~~~aD~vl~VvD~s~~~s~~~~-~~~~~~l~~l-~~~piIvV~NK~Dl~~~~~----------~---~~~~l~~~~~-~~  373 (476)
T 3gee_A          310 MAEADLILYLLDLGTERLDDEL-TEIRELKAAH-PAAKFLTVANKLDRAANAD----------A---LIRAIADGTG-TE  373 (476)
T ss_dssp             CSSCSEEEEEEETTTCSSGGGH-HHHHHHHHHC-TTSEEEEEEECTTSCTTTH----------H---HHHHHHHHHT-SC
T ss_pred             cccCCEEEEEEECCCCcchhhh-HHHHHHHHhc-CCCCEEEEEECcCCCCccc----------h---hHHHHHhcCC-Cc
Confidence            8899999999999999887543 2333333222 3789999999999976542          1   1133444322 48


Q ss_pred             eEEeccCCCCCHHHHHHHHHHHHc
Q 036449          155 YIECSSKTQQNVKAVFDAAIRVVL  178 (197)
Q Consensus       155 ~~~~sa~~~~~i~~l~~~i~~~~~  178 (197)
                      ++++||++|.|++++|++|.+.+.
T Consensus       374 ~i~vSAktg~GI~eL~~~i~~~~~  397 (476)
T 3gee_A          374 VIGISALNGDGIDTLKQHMGDLVK  397 (476)
T ss_dssp             EEECBTTTTBSHHHHHHHHTHHHH
T ss_pred             eEEEEECCCCCHHHHHHHHHHHHh
Confidence            999999999999999999999887

>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*

Probab=99.93  E-value=9e-26  Score=166.30  Aligned_cols=156  Identities=17%  Similarity=0.175  Sum_probs=114.0

Q ss_pred             ceeEEEEEcCCCCCHHHHHHHHhhCCCC-CCCCCceeeeeeEEEEECCeEEEEEEEeCCCcccccccc----------cc
Q 036449            5 RFIKCVTVGDGAVGKTCLLISYTSNTFP-TDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQEDYNRLR----------PL   73 (197)
Q Consensus         5 ~~~~i~v~G~~~~GKstli~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~----------~~   73 (197)
                      +.++|+++|.+|+|||||++++.+..+. ..+++++.+.....+...+  ..+.+|||||+..+....          ..
T Consensus         2 ~~~~I~lvG~~n~GKSTLin~l~g~~~~v~~~~g~t~~~~~~~~~~~~--~~~~liDtpG~~~~~~~~~~~~~~e~i~~~   79 (274)
T 3i8s_A            2 KKLTIGLIGNPNSGKTTLFNQLTGSRQRVGNWAGVTVERKEGQFSTTD--HQVTLVDLPGTYSLTTISSQTSLDEQIACH   79 (274)
T ss_dssp             CCEEEEEEECTTSSHHHHHHHHHTTCEEEEECTTSSSEEEEEEEECSS--CEEEEEECCCCSCSCC----CCHHHHHHHH
T ss_pred             CccEEEEECCCCCCHHHHHHHHhCCCcccCCCCCeeEEEEEEEEEeCC--CceEEEECcCCCccccccccCCHHHHHHHH
Confidence            4689999999999999999999987653 2233333444444555555  356799999998776321          11


Q ss_pred             C--cCCCcEEEEEEeCCCchhHHHHHHHHHHHHhhhCCCCCEEEEeeCCcccCCcccccCCCCCCcccHHHHHHHHHHhC
Q 036449           74 S--YRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPISTAQGEELRKLIG  151 (197)
Q Consensus        74 ~--~~~~~~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  151 (197)
                      +  ...+|++++|+|+++.++...    |...+...  +.|+++|+||+|+.+...          . ......+++.++
T Consensus        80 ~~~~~~~d~ii~VvD~~~~~~~~~----~~~~l~~~--~~p~ivv~NK~Dl~~~~~----------~-~~~~~~l~~~lg  142 (274)
T 3i8s_A           80 YILSGDADLLINVVDASNLERNLY----LTLQLLEL--GIPCIVALNMLDIAEKQN----------I-RIEIDALSARLG  142 (274)
T ss_dssp             HHHHTCCSEEEEEEEGGGHHHHHH----HHHHHHHH--TCCEEEEEECHHHHHHTT----------E-EECHHHHHHHHT
T ss_pred             HHhhcCCCEEEEEecCCChHHHHH----HHHHHHhc--CCCEEEEEECccchhhhh----------H-HHHHHHHHHhcC
Confidence            2  268999999999998655433    34444444  799999999999965432          1 123467788888


Q ss_pred             CCceEEeccCCCCCHHHHHHHHHHHHcCC
Q 036449          152 APAYIECSSKTQQNVKAVFDAAIRVVLQP  180 (197)
Q Consensus       152 ~~~~~~~sa~~~~~i~~l~~~i~~~~~~~  180 (197)
                      + +++++||++|.|++++|++|.+.+...
T Consensus       143 ~-~~i~~SA~~g~gi~el~~~i~~~~~~~  170 (274)
T 3i8s_A          143 C-PVIPLVSTRGRGIEALKLAIDRYKANE  170 (274)
T ss_dssp             S-CEEECCCGGGHHHHHHHHHHHTCCCCC
T ss_pred             C-CEEEEEcCCCCCHHHHHHHHHHHHhcC
Confidence            7 899999999999999999998877654

>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}

Probab=99.93  E-value=4.4e-25  Score=162.53  Aligned_cols=158  Identities=18%  Similarity=0.098  Sum_probs=115.1

Q ss_pred             ceeEEEEEcCCCCCHHHHHHHHhhCCCCCCC-CCceeeeeeEEEEECCeEEEEEEEeCCCcccccc------ccccCc--
Q 036449            5 RFIKCVTVGDGAVGKTCLLISYTSNTFPTDY-VPTVFDNFSANVVVNGSTVNLGLWDTAGQEDYNR------LRPLSY--   75 (197)
Q Consensus         5 ~~~~i~v~G~~~~GKstli~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~------~~~~~~--   75 (197)
                      +.++|+++|++|+|||||++++.+..+.... +.++.+.....+.+.+  ..+.+||+||+..+..      ....++  
T Consensus         2 ~~~~i~lvG~~g~GKTTL~n~l~g~~~~~~~~~~~t~~~~~~~~~~~~--~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~   79 (271)
T 3k53_A            2 VLKTVALVGNPNVGKTTIFNALTGLRQHVGNWPGVTVEKKEGIMEYRE--KEFLVVDLPGIYSLTAHSIDELIARNFILD   79 (271)
T ss_dssp             CCEEEEEEECSSSSHHHHHHHHHTTCEEEEECTTSSCEEEEEEEEETT--EEEEEEECCCCSCCCSSCHHHHHHHHHHHT
T ss_pred             ceeEEEEECCCCCCHHHHHHHHhCCCcccCCCCCeEEEeeEEEEEECC--ceEEEEeCCCccccccCCHHHHHHHHhhhc
Confidence            4689999999999999999999987653322 2233334444555666  3478999999987765      344444  


Q ss_pred             CCCcEEEEEEeCCCchhHHHHHHHHHHHHhhhCCCCCEEEEeeCCcccCCcccccCCCCCCcccHHHHHHHHHHhCCCce
Q 036449           76 RGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPISTAQGEELRKLIGAPAY  155 (197)
Q Consensus        76 ~~~~~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  155 (197)
                      .++|++++|+|+++.+..    ..|...+... ...|+++|+||+|+.+...          ... ....+++.++. ++
T Consensus        80 ~~~d~vi~v~D~~~~~~~----~~~~~~~~~~-~~~p~ilv~NK~Dl~~~~~----------~~~-~~~~l~~~lg~-~~  142 (271)
T 3k53_A           80 GNADVIVDIVDSTCLMRN----LFLTLELFEM-EVKNIILVLNKFDLLKKKG----------AKI-DIKKMRKELGV-PV  142 (271)
T ss_dssp             TCCSEEEEEEEGGGHHHH----HHHHHHHHHT-TCCSEEEEEECHHHHHHHT----------CCC-CHHHHHHHHSS-CE
T ss_pred             cCCcEEEEEecCCcchhh----HHHHHHHHhc-CCCCEEEEEEChhcCcccc----------cHH-HHHHHHHHcCC-cE
Confidence            689999999999986432    2333333333 1389999999999865432          111 25678888888 89


Q ss_pred             EEeccCCCCCHHHHHHHHHHHHcCCC
Q 036449          156 IECSSKTQQNVKAVFDAAIRVVLQPP  181 (197)
Q Consensus       156 ~~~sa~~~~~i~~l~~~i~~~~~~~~  181 (197)
                      +++||++|.|++++|+.+.+.+....
T Consensus       143 ~~~Sa~~g~gi~~l~~~i~~~~~~~~  168 (271)
T 3k53_A          143 IPTNAKKGEGVEELKRMIALMAEGKV  168 (271)
T ss_dssp             EECBGGGTBTHHHHHHHHHHHHHTCC
T ss_pred             EEEEeCCCCCHHHHHHHHHHHHhccc
Confidence            99999999999999999999876543

>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}

Probab=99.92  E-value=2.1e-25  Score=174.34  Aligned_cols=160  Identities=18%  Similarity=0.225  Sum_probs=113.4

Q ss_pred             CceeEEEEEcCCCCCHHHHHHHHhhCCC--CCCCCCceeeeeeEEEEECCeEEEEEEEeCCCc----------ccccccc
Q 036449            4 SRFIKCVTVGDGAVGKTCLLISYTSNTF--PTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQ----------EDYNRLR   71 (197)
Q Consensus         4 ~~~~~i~v~G~~~~GKstli~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~----------~~~~~~~   71 (197)
                      ...++|+++|.+|||||||++++.+...  ...+.+++.+.....+..++.  .+++|||||+          +.|....
T Consensus       173 ~~~~ki~lvG~~nvGKSSLin~l~~~~~~~~~~~~gtT~d~~~~~~~~~~~--~~~l~DT~G~~~~~~~~~~~e~~~~~~  250 (436)
T 2hjg_A          173 EEVIQFCLIGRPNVGKSSLVNAMLGEERVIVSNVAGTTRDAVDTSFTYNQQ--EFVIVDTAGMRKKGKVYETTEKYSVLR  250 (436)
T ss_dssp             TTCEEEEEECSTTSSHHHHHHHHHTSTTEEEC---------CCEEEEETTE--EEEETTHHHHTCBTTBCCCCSHHHHHH
T ss_pred             ccCcEEEEEcCCCCCHHHHHHHHhCCCceeecCCCCceeeeeEEEEEECCe--EEEEEECCCcCcCccccchHHHHHHHH
Confidence            3568999999999999999999998765  345556666666666777774  4779999998          3333333


Q ss_pred             c-cCcCCCcEEEEEEeCCCchhHHHHHHHHHHHHhhhCCCCCEEEEeeCCcccCCcccccCCCCCCcccHHHH-HHHHHH
Q 036449           72 P-LSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPISTAQG-EELRKL  149 (197)
Q Consensus        72 ~-~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~-~~~~~~  149 (197)
                      . .++..+|++++|+|++++.++++.  .|...+...  +.|+++|+||+|+.+.+.          ...++. ..+.+.
T Consensus       251 ~~~~~~~ad~~llv~D~~~~~s~~~~--~~~~~~~~~--~~~iiiv~NK~Dl~~~~~----------~~~~~~~~~~~~~  316 (436)
T 2hjg_A          251 ALKAIDRSEVVAVVLDGEEGIIEQDK--RIAGYAHEA--GKAVVIVVNKWDAVDKDE----------STMKEFEENIRDH  316 (436)
T ss_dssp             HHHHHHHCSEEEEEEETTTCCCHHHH--HHHHHHHHT--TCEEEEEEECGGGSCCCT----------THHHHHHHHHHHH
T ss_pred             HHHHHHhCCEEEEEEcCCcCCcHHHH--HHHHHHHHc--CCcEEEEEECccCCCcch----------HHHHHHHHHHHHh
Confidence            2 367789999999999999888876  566666554  799999999999976432          222222 222222


Q ss_pred             h---CCCceEEeccCCCCCHHHHHHHHHHHHcC
Q 036449          150 I---GAPAYIECSSKTQQNVKAVFDAAIRVVLQ  179 (197)
Q Consensus       150 ~---~~~~~~~~sa~~~~~i~~l~~~i~~~~~~  179 (197)
                      +   +..+++++||++|.|++++|+.+.+.+..
T Consensus       317 l~~~~~~~~~~~SA~tg~~v~~l~~~i~~~~~~  349 (436)
T 2hjg_A          317 FQFLDYAPILFMSALTKKRIHTLMPAIIKASEN  349 (436)
T ss_dssp             CGGGTTSCEEECCTTTCTTGGGHHHHHHHHHHH
T ss_pred             cccCCCCCEEEEecccCCCHHHHHHHHHHHHHH
Confidence            2   23389999999999999999999987754

>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=99.92  E-value=4.6e-26  Score=162.63  Aligned_cols=148  Identities=13%  Similarity=0.127  Sum_probs=101.7

Q ss_pred             CceeEEEEEcCCCCCHHHHHHHHhhCCCCC---CCCCceeeeeeEEEEECCeEEEEEEEeCCCccccccccccCcCC---
Q 036449            4 SRFIKCVTVGDGAVGKTCLLISYTSNTFPT---DYVPTVFDNFSANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRG---   77 (197)
Q Consensus         4 ~~~~~i~v~G~~~~GKstli~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~---   77 (197)
                      .+.++|+++|++|+|||||++++....+..   .+.++....+        ..+.+.+||+||++.+...+..++..   
T Consensus        10 ~~~~~i~~~G~~g~GKTsl~~~l~~~~~~~~~~~~~~~~~~~~--------~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~   81 (218)
T 1nrj_B           10 SYQPSIIIAGPQNSGKTSLLTLLTTDSVRPTVVSQEPLSAADY--------DGSGVTLVDFPGHVKLRYKLSDYLKTRAK   81 (218)
T ss_dssp             CCCCEEEEECSTTSSHHHHHHHHHHSSCCCBCCCSSCEEETTG--------GGSSCEEEECCCCGGGTHHHHHHHHHHGG
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhcCCCCCeeeecCceEEEEe--------eCceEEEEECCCcHHHHHHHHHHHHhccc
Confidence            467999999999999999999999887654   2334433222        23567899999999998888777776   


Q ss_pred             -CcEEEEEEeCC-CchhHHHHHHHHHHHHhhh-----CCCCCEEEEeeCCcccCCcccccCCCCCCcccHHHHHHHHHHh
Q 036449           78 -ADVFILAFSLI-SKASYENVSKKWIPELKHY-----APGVPIILVGTKLDLRDDKQFFIDHPGAVPISTAQGEELRKLI  150 (197)
Q Consensus        78 -~~~~i~v~d~~-~~~s~~~~~~~~~~~i~~~-----~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  150 (197)
                       +|++|+|+|++ ++.++... ..|+..+...     .++.|+++|+||+|+.......    .......+++..++...
T Consensus        82 ~~~~~i~v~D~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~----~~~~~l~~~~~~~~~~~  156 (218)
T 1nrj_B           82 FVKGLIFMVDSTVDPKKLTTT-AEFLVDILSITESSCENGIDILIACNKSELFTARPPS----KIKDALESEIQKVIERR  156 (218)
T ss_dssp             GEEEEEEEEETTSCTTCCHHH-HHHHHHHHHHHHHHSTTCCCEEEEEECTTSTTCCCHH----HHHHHHHHHHHHHHHHH
T ss_pred             cCCEEEEEEECCCChHHHHHH-HHHHHHHHhcccccccCCCCEEEEEEchHhcccCCHH----HHHHHHHHHHHHHHHHH
Confidence             89999999999 88888887 4554444332     2589999999999997654200    00001145566777777


Q ss_pred             CCCceEEeccCCCCC
Q 036449          151 GAPAYIECSSKTQQN  165 (197)
Q Consensus       151 ~~~~~~~~sa~~~~~  165 (197)
                      +. +++++||+++.+
T Consensus       157 ~~-~~~~~Sa~~~~~  170 (218)
T 1nrj_B          157 KK-SLNEVERKINEE  170 (218)
T ss_dssp             HH-HHHC--------
T ss_pred             hc-cccccccccccc
Confidence            76 899999998764

>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*

Probab=99.92  E-value=5.9e-25  Score=172.67  Aligned_cols=160  Identities=19%  Similarity=0.231  Sum_probs=117.9

Q ss_pred             CceeEEEEEcCCCCCHHHHHHHHhhCC--CCCCCCCceeeeeeEEEEECCeEEEEEEEeCCC----------cccccccc
Q 036449            4 SRFIKCVTVGDGAVGKTCLLISYTSNT--FPTDYVPTVFDNFSANVVVNGSTVNLGLWDTAG----------QEDYNRLR   71 (197)
Q Consensus         4 ~~~~~i~v~G~~~~GKstli~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G----------~~~~~~~~   71 (197)
                      ...++|+++|.+|+|||||++++.+..  ....+.+++.+.....+..++.  .+++|||||          ++.|....
T Consensus       193 ~~~~ki~ivG~~~vGKSslin~l~~~~~~~~~~~~gtt~~~~~~~~~~~~~--~~~l~DT~G~~~~~~~~~~~e~~~~~~  270 (456)
T 4dcu_A          193 EEVIQFCLIGRPNVGKSSLVNAMLGEERVIVSNVAGTTRDAVDTSFTYNQQ--EFVIVDTAGMRKKGKVYETTEKYSVLR  270 (456)
T ss_dssp             TTCEEEEEECSTTSSHHHHHHHHHTSTTEEECC------CTTSEEEEETTE--EEEETTGGGTTTBTTBCCCCSHHHHHH
T ss_pred             cccceeEEecCCCCCHHHHHHHHhCCCccccCCCCCeEEEEEEEEEEECCc--eEEEEECCCCCcCcccchHHHHHHHHH
Confidence            456899999999999999999999764  3445556666666666777774  677999999          56666555


Q ss_pred             cc-CcCCCcEEEEEEeCCCchhHHHHHHHHHHHHhhhCCCCCEEEEeeCCcccCCcccccCCCCCCcccHHHHHHHHHHh
Q 036449           72 PL-SYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPISTAQGEELRKLI  150 (197)
Q Consensus        72 ~~-~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  150 (197)
                      .. ++..+|++++|+|++++.+..+  ..|...+...  +.|+++|+||+|+.+.+.          ...++..+.++..
T Consensus       271 ~~~~~~~ad~~llviD~~~~~~~~~--~~~~~~~~~~--~~~~ilv~NK~Dl~~~~~----------~~~~~~~~~~~~~  336 (456)
T 4dcu_A          271 ALKAIDRSEVVAVVLDGEEGIIEQD--KRIAGYAHEA--GKAVVIVVNKWDAVDKDE----------STMKEFEENIRDH  336 (456)
T ss_dssp             HHHHHHHCSEEEEEEETTTCCCHHH--HHHHHHHHHT--TCEEEEEEECGGGSCCCS----------SHHHHHHHHHHHH
T ss_pred             HHHHHhhCCEEEEEEeCCCCcCHHH--HHHHHHHHHc--CCCEEEEEEChhcCCCch----------HHHHHHHHHHHHh
Confidence            43 6788999999999998765443  3566666654  799999999999976443          4445555555544


Q ss_pred             ----CCCceEEeccCCCCCHHHHHHHHHHHHcC
Q 036449          151 ----GAPAYIECSSKTQQNVKAVFDAAIRVVLQ  179 (197)
Q Consensus       151 ----~~~~~~~~sa~~~~~i~~l~~~i~~~~~~  179 (197)
                          +..+++++||++|.|++++|+.+.+.+..
T Consensus       337 ~~~~~~~~~~~~SA~~g~gv~~l~~~i~~~~~~  369 (456)
T 4dcu_A          337 FQFLDYAPILFMSALTKKRIHTLMPAIIKASEN  369 (456)
T ss_dssp             CGGGTTSCEEECCTTTCTTGGGHHHHHHHHHHH
T ss_pred             cccCCCCCEEEEcCCCCcCHHHHHHHHHHHHHH
Confidence                23489999999999999999999987644

>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1

Probab=99.92  E-value=4.8e-24  Score=166.77  Aligned_cols=153  Identities=21%  Similarity=0.204  Sum_probs=106.8

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhhCCC--CCCCCCceeeeeeEEEEECCeEEEEEEEeCCCcccc---------ccccccCc
Q 036449            7 IKCVTVGDGAVGKTCLLISYTSNTF--PTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQEDY---------NRLRPLSY   75 (197)
Q Consensus         7 ~~i~v~G~~~~GKstli~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~---------~~~~~~~~   75 (197)
                      .+|+++|.+|||||||++++.+...  ...+++++.+.......+++.  .+++|||||++..         ...+..++
T Consensus         2 ~~v~ivG~pnvGKStL~nrl~~~~~~~v~~~~g~T~d~~~~~~~~~~~--~~~l~DT~G~~~~~~~~~~~~~~~~~~~~~   79 (439)
T 1mky_A            2 ATVLIVGRPNVGKSTLFNKLVKKKKAIVEDEEGVTRDPVQDTVEWYGK--TFKLVDTCGVFDNPQDIISQKMKEVTLNMI   79 (439)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHC--------------CCSEEEEEETTE--EEEEEECTTTTSSGGGCCCHHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCCCceecCCCCCccceeeEEEEECCe--EEEEEECCCccccccchHHHHHHHHHHHHH
Confidence            4799999999999999999998763  355556666666667777774  4679999997642         33455678


Q ss_pred             CCCcEEEEEEeCCCchhHHHHHHHHHHHHhhhCCCCCEEEEeeCCcccCCcccccCCCCCCcccHHHH-HHHHHHhCCCc
Q 036449           76 RGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPISTAQG-EELRKLIGAPA  154 (197)
Q Consensus        76 ~~~~~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~  154 (197)
                      .++|++++|+|++++.+..+.  .+...++..  +.|+++|+||+|+...            . ..+. .++. ..+..+
T Consensus        80 ~~ad~il~V~D~~~~~~~~d~--~i~~~l~~~--~~p~ilv~NK~D~~~~------------~-~~~~~~~~~-~lg~~~  141 (439)
T 1mky_A           80 READLVLFVVDGKRGITKEDE--SLADFLRKS--TVDTILVANKAENLRE------------F-EREVKPELY-SLGFGE  141 (439)
T ss_dssp             TTCSEEEEEEETTTCCCHHHH--HHHHHHHHH--TCCEEEEEESCCSHHH------------H-HHHTHHHHG-GGSSCS
T ss_pred             HhCCEEEEEEECCCCCCHHHH--HHHHHHHHc--CCCEEEEEeCCCCccc------------c-HHHHHHHHH-hcCCCC
Confidence            999999999999987665432  333444444  7899999999998531            0 1122 3443 456557


Q ss_pred             eEEeccCCCCCHHHHHHHHHHHHcC
Q 036449          155 YIECSSKTQQNVKAVFDAAIRVVLQ  179 (197)
Q Consensus       155 ~~~~sa~~~~~i~~l~~~i~~~~~~  179 (197)
                      ++++||++|.|+.++++++.+.+..
T Consensus       142 ~~~iSA~~g~gv~~L~~~i~~~l~~  166 (439)
T 1mky_A          142 PIPVSAEHNINLDTMLETIIKKLEE  166 (439)
T ss_dssp             CEECBTTTTBSHHHHHHHHHHHHHH
T ss_pred             EEEEeccCCCCHHHHHHHHHHhccc
Confidence            8999999999999999999998863

>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}

Probab=99.91  E-value=2.9e-23  Score=158.40  Aligned_cols=161  Identities=19%  Similarity=0.146  Sum_probs=116.5

Q ss_pred             CceeEEEEEcCCCCCHHHHHHHHhhCCCCC-CCCCceeeeeeEEEEECCeEEEEEEEeCCCcccccc---------cccc
Q 036449            4 SRFIKCVTVGDGAVGKTCLLISYTSNTFPT-DYVPTVFDNFSANVVVNGSTVNLGLWDTAGQEDYNR---------LRPL   73 (197)
Q Consensus         4 ~~~~~i~v~G~~~~GKstli~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~---------~~~~   73 (197)
                      ...++|+++|.+|||||||++++.+..... .+..++...........+  ..+.+|||||...+..         ....
T Consensus       165 ~~~~~v~lvG~~gvGKSTLin~L~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~  242 (357)
T 2e87_A          165 LEIPTVVIAGHPNVGKSTLLKALTTAKPEIASYPFTTRGINVGQFEDGY--FRYQIIDTPGLLDRPISERNEIEKQAILA  242 (357)
T ss_dssp             SSSCEEEEECSTTSSHHHHHHHHCSSCCEEECCTTCSSCEEEEEEEETT--EEEEEEECTTTSSSCSTTSCHHHHHHHHG
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhCCCCccCCCCCeeeceeEEEEEecC--ceEEEEeCCCccccchhhhhHHHHHHHHH
Confidence            356899999999999999999999876422 222222222222333343  5688999999754321         1112


Q ss_pred             CcCCCcEEEEEEeCCCch--hHHHHHHHHHHHHhhhCCCCCEEEEeeCCcccCCcccccCCCCCCcccHHHHHHHHHHhC
Q 036449           74 SYRGADVFILAFSLISKA--SYENVSKKWIPELKHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPISTAQGEELRKLIG  151 (197)
Q Consensus        74 ~~~~~~~~i~v~d~~~~~--s~~~~~~~~~~~i~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  151 (197)
                      +...+|++++|+|++++.  +++.. ..|+..+....++.|+++|+||+|+.....            .+++..++...+
T Consensus       243 ~~~~ad~illV~D~s~~~~~~~~~~-~~~~~~i~~~~~~~piilV~NK~Dl~~~~~------------~~~~~~~~~~~~  309 (357)
T 2e87_A          243 LRYLGNLIIYIFDPSEHCGFPLEEQ-IHLFEEVHGEFKDLPFLVVINKIDVADEEN------------IKRLEKFVKEKG  309 (357)
T ss_dssp             GGGTCSEEEEEECTTCTTSSCHHHH-HHHHHHHHHHTTTSCEEEEECCTTTCCHHH------------HHHHHHHHHHTT
T ss_pred             HHhcCCEEEEEEeCCccccCCHHHH-HHHHHHHHHhcCCCCEEEEEECcccCChHH------------HHHHHHHHHhcC
Confidence            345689999999999877  66665 677777777555899999999999965432            244556666677


Q ss_pred             CCceEEeccCCCCCHHHHHHHHHHHHcCC
Q 036449          152 APAYIECSSKTQQNVKAVFDAAIRVVLQP  180 (197)
Q Consensus       152 ~~~~~~~sa~~~~~i~~l~~~i~~~~~~~  180 (197)
                      . +++++||++|.|++++|++|.+.+...
T Consensus       310 ~-~~~~iSA~~g~gi~~l~~~i~~~l~~~  337 (357)
T 2e87_A          310 L-NPIKISALKGTGIDLVKEEIIKTLRPL  337 (357)
T ss_dssp             C-CCEECBTTTTBTHHHHHHHHHHHHHHH
T ss_pred             C-CeEEEeCCCCcCHHHHHHHHHHHHHHH
Confidence            6 899999999999999999999988543

>3qq5_A Small GTP-binding protein; hydrogenase, H-cluster, HYDA maturation, GTP-binding domain, maturation enzyme, oxidoreductase; 2.99A {Thermotoga neapolitana}

Probab=99.91  E-value=3e-25  Score=171.58  Aligned_cols=157  Identities=17%  Similarity=0.181  Sum_probs=115.4

Q ss_pred             CceeEEEEEcCCCCCHHHHHHHHhhCCCC--CCCCCceeeeeeEEEEECCeEEEEEEEeCCCccccccccc-------cC
Q 036449            4 SRFIKCVTVGDGAVGKTCLLISYTSNTFP--TDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQEDYNRLRP-------LS   74 (197)
Q Consensus         4 ~~~~~i~v~G~~~~GKstli~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~-------~~   74 (197)
                      ...++|+++|..|+|||||++++....+.  ....+++.+.....+.+.+. ..+.+|||||++.+..+..       .+
T Consensus        32 ~~~~kI~IvG~~~vGKSTLin~L~~~~~~~~~~~~gtT~d~~~~~~~~~~~-~~l~liDTpG~~d~~~l~~~~~~~~~~~  110 (423)
T 3qq5_A           32 GFRRYIVVAGRRNVGKSSFMNALVGQNVSIVSDYAGTTTDPVYKSMELHPI-GPVTLVDTPGLDDVGELGRLRVEKARRV  110 (423)
T ss_dssp             CCCEEEEEECSCSTTTTTTTTSSCC-------------CCCCEEEEEETTT-EEEEEEECSSTTCCCTTCCCCHHHHHHH
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHcCCCCccCCCCCeeeeeEEEEEEECCC-CeEEEEECcCCCcccchhHHHHHHHHHH
Confidence            45689999999999999999999987753  33444444445555556553 2678999999988766533       36


Q ss_pred             cCCCcEEEEEEeCCCchhHHHHHHHHHHHHhhhCCCCCEEEEeeCCcccCCcccccCCCCCCcccHHHHHHHHHHhCCCc
Q 036449           75 YRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPISTAQGEELRKLIGAPA  154 (197)
Q Consensus        75 ~~~~~~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  154 (197)
                      +..+|++|+|+|++..+.    ...|+..+...  +.|+++|+||+|+.....            .+.+..+++.++. +
T Consensus       111 l~~aD~vllVvD~~~~~~----~~~~l~~l~~~--~~piIvV~NK~Dl~~~~~------------~~~~~~l~~~~g~-~  171 (423)
T 3qq5_A          111 FYRADCGILVTDSAPTPY----EDDVVNLFKEM--EIPFVVVVNKIDVLGEKA------------EELKGLYESRYEA-K  171 (423)
T ss_dssp             HTSCSEEEEECSSSCCHH----HHHHHHHHHHT--TCCEEEECCCCTTTTCCC------------THHHHHSSCCTTC-C
T ss_pred             HhcCCEEEEEEeCCChHH----HHHHHHHHHhc--CCCEEEEEeCcCCCCccH------------HHHHHHHHHHcCC-C
Confidence            788999999999933322    25677777766  799999999999976543            2556677777787 8


Q ss_pred             eEEeccCCCCCHHHHHHHHHHHHcCC
Q 036449          155 YIECSSKTQQNVKAVFDAAIRVVLQP  180 (197)
Q Consensus       155 ~~~~sa~~~~~i~~l~~~i~~~~~~~  180 (197)
                      ++++||++|.|++++|++|.+.+...
T Consensus       172 v~~vSAktg~gI~eL~~~L~~~l~~~  197 (423)
T 3qq5_A          172 VLLVSALQKKGFDDIGKTISEILPGD  197 (423)
T ss_dssp             CCCCSSCCTTSTTTHHHHHHHHSCCC
T ss_pred             EEEEECCCCCCHHHHHHHHHHhhhhh
Confidence            99999999999999999999998554

>3sjy_A Translation initiation factor 2 subunit gamma; zinc finger, initiate translation, tRNA binding, mRNA bindin binding; HET: GCP GDP; 2.00A {Sulfolobus solfataricus P2} PDB: 3pen_A* 3sjz_A* 2qn6_A* 2aho_A 2qmu_A* 2plf_A* 3v11_A* 3i1f_A* 3cw2_A 2pmd_A* 3p3m_A* 3qsy_A*

Probab=99.91  E-value=4e-23  Score=159.90  Aligned_cols=168  Identities=15%  Similarity=0.067  Sum_probs=114.7

Q ss_pred             CCCceeEEEEEcCCCCCHHHHHHHHhhCCCCCCCCCceeeeee--------EEEE---------E---CCeEEEEEEEeC
Q 036449            2 SASRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFS--------ANVV---------V---NGSTVNLGLWDT   61 (197)
Q Consensus         2 ~~~~~~~i~v~G~~~~GKstli~~~~~~~~~~~~~~~~~~~~~--------~~~~---------~---~~~~~~~~i~D~   61 (197)
                      ...+.++|+++|++++|||||+++|.+........ .......        ..+.         .   ......+.+|||
T Consensus         4 ~~~~~~~I~vvG~~~~GKSTLi~~L~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiDt   82 (403)
T 3sjy_A            4 KVQPEVNIGVVGHVDHGKTTLVQAITGIWTSKKLG-YAETNIGVCESCKKPEAYVTEPSCKSCGSDDEPKFLRRISFIDA   82 (403)
T ss_dssp             CCCCCCEEEEECSTTSSHHHHHHHHHSCCCCSSSE-EEEEEEEECTTSCTTTTEESSSCCGGGTCCSCCEEEEEEEEEEC
T ss_pred             ccCCCcEEEEECCCCCCHHHHHHHHhCcccccccC-ccccceeeccccccccceecccccccccccccccccceEEEEEC
Confidence            45678999999999999999999998754322100 0000000        0000         0   112367889999


Q ss_pred             CCccccccccccCcCCCcEEEEEEeCCCchhHHHHHHHHHHHHhhhCCCCCEEEEeeCCcccCCcccccCCCCCCcccHH
Q 036449           62 AGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPISTA  141 (197)
Q Consensus        62 ~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~  141 (197)
                      ||++.|.......+..+|++|+|+|++++.+.... ..++..+.... ..|+++|+||+|+.+....        ....+
T Consensus        83 PGh~~~~~~~~~~~~~~D~~ilVvda~~~~~~~qt-~~~~~~~~~~~-~~~iivviNK~Dl~~~~~~--------~~~~~  152 (403)
T 3sjy_A           83 PGHEVLMATMLSGAALMDGAILVVAANEPFPQPQT-REHFVALGIIG-VKNLIIVQNKVDVVSKEEA--------LSQYR  152 (403)
T ss_dssp             CCCGGGHHHHHHHHTTCSEEEEEEETTSCSSCHHH-HHHHHHHHHHT-CCCEEEEEECGGGSCHHHH--------HHHHH
T ss_pred             CCcHHHHHHHHHHHhhCCEEEEEEECCCCCCcHHH-HHHHHHHHHcC-CCCEEEEEECccccchHHH--------HHHHH
Confidence            99999999888899999999999999998755555 45555555442 3589999999999754310        01112


Q ss_pred             HHHHHHHHhC--CCceEEeccCCCCCHHHHHHHHHHHHcCC
Q 036449          142 QGEELRKLIG--APAYIECSSKTQQNVKAVFDAAIRVVLQP  180 (197)
Q Consensus       142 ~~~~~~~~~~--~~~~~~~sa~~~~~i~~l~~~i~~~~~~~  180 (197)
                      +..++....+  ..+++++||++|.|++++++.|.+.+...
T Consensus       153 ~i~~~l~~~~~~~~~ii~vSA~~g~gi~~L~~~l~~~l~~~  193 (403)
T 3sjy_A          153 QIKQFTKGTWAENVPIIPVSALHKINIDSLIEGIEEYIKTP  193 (403)
T ss_dssp             HHHHHHTTSTTTTCCEEECBTTTTBSHHHHHHHHHHHSCCC
T ss_pred             HHHHHHHhhCCCCCEEEEEECCCCcChHHHHHHHHHhCCCC
Confidence            2233332221  23799999999999999999999877654

>1xzp_A Probable tRNA modification GTPase TRME; GTP-binding, THF-binding, hydrolase; 2.30A {Thermotoga maritima} SCOP: a.24.25.1 c.37.1.8 d.250.1.2 PDB: 1xzq_A* 1xzp_B 1xzq_B*

Probab=99.91  E-value=4.7e-24  Score=167.52  Aligned_cols=151  Identities=21%  Similarity=0.261  Sum_probs=115.0

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHhhCC--CCCCCCCceeeeeeEEEEECCeEEEEEEEeCCCcc-ccccc--------cccC
Q 036449            6 FIKCVTVGDGAVGKTCLLISYTSNT--FPTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQE-DYNRL--------RPLS   74 (197)
Q Consensus         6 ~~~i~v~G~~~~GKstli~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~-~~~~~--------~~~~   74 (197)
                      .++|+++|.+|+|||||++++.+..  ....+.+|+.+.....+.+++  ..+.+|||||+. .+...        ...+
T Consensus       243 ~~kV~ivG~pnvGKSSLln~L~~~~~a~vs~~~gTT~d~~~~~i~~~g--~~~~l~DTaG~~~~~~~~ve~~gi~~~~~~  320 (482)
T 1xzp_A          243 GLRMVIVGKPNVGKSTLLNRLLNEDRAIVTDIPGTTRDVISEEIVIRG--ILFRIVDTAGVRSETNDLVERLGIERTLQE  320 (482)
T ss_dssp             CEEEEEECCHHHHTCHHHHHHHHHTBCCCCCSSCCSSCSCCEEEEETT--EEEEEEESSCCCSSCCTTCCCCCHHHHHHH
T ss_pred             CCEEEEECcCCCcHHHHHHHHHCCCCCccCCCCCeeeeeEEEEEecCC--eEEEEEECCCccccchhhHHHHHHHHHHHH
Confidence            3899999999999999999999864  456667777777777777777  457899999987 55422        2245


Q ss_pred             cCCCcEEEEEEeCCCchhHHHHHHHHHHHHhhhCCCCCEEEEeeCCcccCCcccccCCCCCCcccHHHHHHHHHHhCCCc
Q 036449           75 YRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPISTAQGEELRKLIGAPA  154 (197)
Q Consensus        75 ~~~~~~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  154 (197)
                      +..+|++|+|+|++++.++++.  .++..+    ++.|+++|+||+|+.+.            ...++...+.. .+. +
T Consensus       321 ~~~aD~vl~VvD~s~~~s~~~~--~il~~l----~~~piivV~NK~DL~~~------------~~~~~~~~~~~-~~~-~  380 (482)
T 1xzp_A          321 IEKADIVLFVLDASSPLDEEDR--KILERI----KNKRYLVVINKVDVVEK------------INEEEIKNKLG-TDR-H  380 (482)
T ss_dssp             HHHCSEEEEEEETTSCCCHHHH--HHHHHH----TTSSEEEEEEECSSCCC------------CCHHHHHHHHT-CST-T
T ss_pred             hhcccEEEEEecCCCCCCHHHH--HHHHHh----cCCCEEEEEECcccccc------------cCHHHHHHHhc-CCC-c
Confidence            7789999999999999887654  333433    37899999999999642            22333334332 233 7


Q ss_pred             eEEeccCCCCCHHHHHHHHHHHHc
Q 036449          155 YIECSSKTQQNVKAVFDAAIRVVL  178 (197)
Q Consensus       155 ~~~~sa~~~~~i~~l~~~i~~~~~  178 (197)
                      ++++||++|.|+++++++|.+.+.
T Consensus       381 ~i~iSAktg~Gi~eL~~~l~~~~~  404 (482)
T 1xzp_A          381 MVKISALKGEGLEKLEESIYRETQ  404 (482)
T ss_dssp             EEEEEGGGTCCHHHHHHHHHHHTH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHh
Confidence            999999999999999999999765

>1cip_A Protein (guanine nucleotide-binding protein alpha-1 subunit); GTPase, hydrolase; HET: GNP; 1.50A {Rattus norvegicus} SCOP: a.66.1.1 c.37.1.8 PDB: 1agr_A* 1bof_A* 1gdd_A* 1gfi_A* 1gia_A* 1gp2_A* 3ffa_A* 3ffb_A* 1gg2_A* 1git_A* 1svs_A* 1svk_A* 2zjz_A* 2zjy_A* 3ums_A* 2pz2_A* 2pz3_A* 1as0_A* 1as2_A* 1as3_A* ...

Probab=99.91  E-value=1.7e-23  Score=158.47  Aligned_cols=125  Identities=18%  Similarity=0.185  Sum_probs=95.7

Q ss_pred             EEEEEEEeCCCccccccccccCcCCCcEEEEEEeCCC----------chhHHHHHHHHHHHHhhh--CCCCCEEEEeeCC
Q 036449           53 TVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLIS----------KASYENVSKKWIPELKHY--APGVPIILVGTKL  120 (197)
Q Consensus        53 ~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~----------~~s~~~~~~~~~~~i~~~--~~~~~~ivv~nK~  120 (197)
                      .+.+++||++|++.++..|..++++++++|+|||+++          ..++.+. ..|+..+...  .+++|+++++||+
T Consensus       192 ~~~l~iwDt~GQe~~r~~w~~yf~~a~~iIfV~dls~~d~~l~ed~~~nr~~e~-~~~~~~i~~~~~~~~~piiLv~NK~  270 (353)
T 1cip_A          192 DLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHES-MKLFDSICNNKWFTDTSIILFLNKK  270 (353)
T ss_dssp             TEEEEEEEECCSGGGGGGGGGGCTTCSEEEEEEEGGGGGCEETTEEEEEHHHHH-HHHHHHHHTCGGGTTSEEEEEEECH
T ss_pred             CeeEEEEeCCCchhhhHHHHHHHhcCCEEEEEEECccccccccccchhhhHHHH-HHHHHHHHcCccccCCcEEEEEECc
Confidence            3778999999999999999999999999999999999          5668887 4555555442  2689999999999


Q ss_pred             cccCCccc---c--cCCCCCCcccHHHHHHHHHH-----------hCCCceEEeccCCCCCHHHHHHHHHHHHcC
Q 036449          121 DLRDDKQF---F--IDHPGAVPISTAQGEELRKL-----------IGAPAYIECSSKTQQNVKAVFDAAIRVVLQ  179 (197)
Q Consensus       121 D~~~~~~~---~--~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~sa~~~~~i~~l~~~i~~~~~~  179 (197)
                      |+.+....   .  ..+.....++.+++..++..           .+. .+++|||+++.||+++|+++.+.+..
T Consensus       271 DL~~~ki~~~~l~~~fp~~~g~~~~~e~~~~~~~~f~~l~~~~~~~~~-~~~etSA~~~~nV~~vF~~v~~~i~~  344 (353)
T 1cip_A          271 DLFEEKIKKSPLTICYPEYAGSNTYEEAAAYIQCQFEDLNKRKDTKEI-YTHFTCATDTKNVQFVFDAVTDVIIK  344 (353)
T ss_dssp             HHHHHHHTTSCGGGTCTTCCSCSCHHHHHHHHHHHHHTTCSCTTTCCE-EEEECCTTCHHHHHHHHHHHHHHHHH
T ss_pred             CchhhhccccchhhcccccCCCCCHHHHHHHHHHHHHHhhcccCCCce-EEEEEECcCchhHHHHHHHHHHHHHH
Confidence            99643210   0  00011112567788888762           334 78999999999999999999998764

>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X

Probab=99.90  E-value=5.6e-23  Score=153.24  Aligned_cols=159  Identities=17%  Similarity=0.105  Sum_probs=111.8

Q ss_pred             CceeEEEEEcCCCCCHHHHHHHHhhCCCC--CCCCCceeeeeeEEEEECCeEEEEEEEeCCCcc---------ccccccc
Q 036449            4 SRFIKCVTVGDGAVGKTCLLISYTSNTFP--TDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQE---------DYNRLRP   72 (197)
Q Consensus         4 ~~~~~i~v~G~~~~GKstli~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~---------~~~~~~~   72 (197)
                      .+..+|+++|++|+|||||++++.+..+.  .....++.......+..++  ..+.+|||||+.         .+.....
T Consensus         6 ~r~~~VaIvG~~nvGKSTLln~L~g~~~~i~s~~~~tTr~~~~gi~~~~~--~~i~~iDTpG~~~~~~~~l~~~~~~~~~   83 (301)
T 1ega_A            6 SYCGFIAIVGRPNVGKSTLLNKLLGQKISITSRKAQTTRHRIVGIHTEGA--YQAIYVDTPGLHMEEKRAINRLMNKAAS   83 (301)
T ss_dssp             CEEEEEEEECSSSSSHHHHHHHHHTCSEEECCCCSSCCSSCEEEEEEETT--EEEEEESSSSCCHHHHHHHHHHHTCCTT
T ss_pred             ccCCEEEEECCCCCCHHHHHHHHHCCCccccCCCCCcceeeEEEEEEECC--eeEEEEECcCCCccchhhHHHHHHHHHH
Confidence            35568999999999999999999987653  2223333322222333344  568899999987         3445566


Q ss_pred             cCcCCCcEEEEEEeCCCchhHHHHHHHHHHHHhhhCCCCCEEEEeeCCcccCCcccccCCCCCCcccHHHHHHHHHHhCC
Q 036449           73 LSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPISTAQGEELRKLIGA  152 (197)
Q Consensus        73 ~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  152 (197)
                      .++..+|++++|+|.++ -+  .....+...+..  .+.|+++++||+|+.....          ...+....+++.++.
T Consensus        84 ~~l~~~D~vl~Vvd~~~-~~--~~~~~i~~~l~~--~~~P~ilvlNK~D~~~~~~----------~~~~~l~~l~~~~~~  148 (301)
T 1ega_A           84 SSIGDVELVIFVVEGTR-WT--PDDEMVLNKLRE--GKAPVILAVNKVDNVQEKA----------DLLPHLQFLASQMNF  148 (301)
T ss_dssp             SCCCCEEEEEEEEETTC-CC--HHHHHHHHHHHS--SSSCEEEEEESTTTCCCHH----------HHHHHHHHHHTTSCC
T ss_pred             HHHhcCCEEEEEEeCCC-CC--HHHHHHHHHHHh--cCCCEEEEEECcccCccHH----------HHHHHHHHHHHhcCc
Confidence            78899999999999977 22  221233333433  3789999999999965221          223445566666665


Q ss_pred             CceEEeccCCCCCHHHHHHHHHHHHcC
Q 036449          153 PAYIECSSKTQQNVKAVFDAAIRVVLQ  179 (197)
Q Consensus       153 ~~~~~~sa~~~~~i~~l~~~i~~~~~~  179 (197)
                      ..++++||+++.|++++++.+.+.+..
T Consensus       149 ~~~i~iSA~~g~~v~~l~~~i~~~l~~  175 (301)
T 1ega_A          149 LDIVPISAETGLNVDTIAAIVRKHLPE  175 (301)
T ss_dssp             SEEEECCTTTTTTHHHHHHHHHTTCCB
T ss_pred             CceEEEECCCCCCHHHHHHHHHHhCCc
Confidence            579999999999999999999987654

>3izy_P Translation initiation factor IF-2, mitochondrial; E coli, RNA, ribosomal; 10.80A {Bos taurus}

Probab=99.90  E-value=3.6e-25  Score=175.24  Aligned_cols=163  Identities=20%  Similarity=0.182  Sum_probs=113.7

Q ss_pred             CceeEEEEEcCCCCCHHHHHHHHhhCCCCCCCCCceeeee-eEEEEECCeEEEEEEEeCCCccccccccccCcCCCcEEE
Q 036449            4 SRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNF-SANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFI   82 (197)
Q Consensus         4 ~~~~~i~v~G~~~~GKstli~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i   82 (197)
                      ++.++|+++|++++|||||+++|....+...+.++....+ ...+..+ ....++||||||++.|..++..++..+|++|
T Consensus         2 ~r~pkV~IvG~~~vGKTSLl~~L~~~~~~~~~~~giT~~i~~~~v~~~-~g~~i~~iDTPGhe~f~~~~~~~~~~aD~vI   80 (537)
T 3izy_P            2 PRSPVVTIMGHVDHGKTTLLDKLRKTQVAAMEAGGITQHIGAFLVSLP-SGEKITFLDTPGHAAFSAMRARGTQVTDIVI   80 (537)
T ss_dssp             CCCCBCEEEESTTTTHHHHHHHHHHHHHHHSSSCCBCCCTTSCCBCSS-CSSCCBCEECSSSCCTTTSBBSSSBSBSSCE
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhCCCcccccCCceeEEEeEEEEEeC-CCCEEEEEECCChHHHHHHHHHHHccCCEEE
Confidence            4678999999999999999999987655443333332222 1222221 1235789999999999999999999999999


Q ss_pred             EEEeCCCchhHHHHHHHHHHHHhhhCCCCCEEEEeeCCcccCCcccccCCCCCCcccHHHHHHH---HHHhC-CCceEEe
Q 036449           83 LAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPISTAQGEEL---RKLIG-APAYIEC  158 (197)
Q Consensus        83 ~v~d~~~~~s~~~~~~~~~~~i~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~-~~~~~~~  158 (197)
                      +|+|++++...+..  .++..+...  +.|+++++||+|+...+.        .... .+...+   ...++ ..+++++
T Consensus        81 LVVDa~dg~~~qt~--e~l~~~~~~--~vPiIVViNKiDl~~~~~--------~~v~-~~l~~~~~~~e~~~~~~~iv~v  147 (537)
T 3izy_P           81 LVVAADDGVMKQTV--ESIQHAKDA--HVPIVLAINKCDKAEADP--------EKVK-KELLAYDVVCEDYGGDVQAVHV  147 (537)
T ss_dssp             EECBSSSCCCHHHH--HHHHHHHTT--TCCEEECCBSGGGTTTSC--------CSSS-SHHHHTTSCCCCSSSSEEECCC
T ss_pred             EEEECCCCccHHHH--HHHHHHHHc--CCcEEEEEecccccccch--------HHHH-HHHHhhhhhHHhcCCCceEEEE
Confidence            99999997766654  333333333  789999999999975331        0011 111111   11111 2278999


Q ss_pred             ccCCCCCHHHHHHHHHHHHcCC
Q 036449          159 SSKTQQNVKAVFDAAIRVVLQP  180 (197)
Q Consensus       159 sa~~~~~i~~l~~~i~~~~~~~  180 (197)
                      ||++|.|+++++++|...+...
T Consensus       148 SAktG~GI~eLle~I~~l~~~~  169 (537)
T 3izy_P          148 SALTGENMMALAEATIALAEML  169 (537)
T ss_dssp             CSSSSCSSHHHHHHHHHHHTTC
T ss_pred             ECCCCCCchhHHHHHHHhhhcc
Confidence            9999999999999999887643

>1s0u_A EIF-2-gamma, translation initiation factor 2 gamma subunit; GTPase, EF-1A, tRNA; 2.40A {Methanocaldococcus jannaschii} SCOP: b.43.3.1 b.44.1.1 c.37.1.8

Probab=99.90  E-value=1.9e-22  Score=156.32  Aligned_cols=166  Identities=19%  Similarity=0.152  Sum_probs=104.5

Q ss_pred             CCCCceeEEEEEcCCCCCHHHHHHHHhhCC---CCCCCCC--ceeeeeeE-EEEE-------------C--C----eEEE
Q 036449            1 MSASRFIKCVTVGDGAVGKTCLLISYTSNT---FPTDYVP--TVFDNFSA-NVVV-------------N--G----STVN   55 (197)
Q Consensus         1 m~~~~~~~i~v~G~~~~GKstli~~~~~~~---~~~~~~~--~~~~~~~~-~~~~-------------~--~----~~~~   55 (197)
                      |+..+.++|+++|+.++|||||++++.+..   +..+..+  |....+.. ....             +  +    ....
T Consensus         3 ~~r~~~~~I~iiG~~d~GKSTLi~~L~g~~~~~~~~e~~~giTi~~~~~~~~~~~~~~~~~y~~~~~~~~~g~~~~~~~~   82 (408)
T 1s0u_A            3 LGSQAEVNIGMVGHVDHGKTSLTKALTGVWTDRHSEELRRGISIRLGYADCEIRKCPQCGTYTTKPRCPNCLAETEFLRR   82 (408)
T ss_dssp             --CCCCEEEEEESCTTSSHHHHHHHHHSCCCCC-------CCCCCCEEEEEEEEECTTTCCEESSSBCTTSCCBCEEEEE
T ss_pred             cccCCceEEEEEcCCCCCHHHHHHHHhCCccccCcccccCCcEEEecccccccccccccccccccccccccCcccccccE
Confidence            455678999999999999999999998432   2222222  32211111 1110             1  1    1367


Q ss_pred             EEEEeCCCccccccccccCcCCCcEEEEEEeCCCc----hhHHHHHHHHHHHHhhhCCCCCEEEEeeCCcccCCcccccC
Q 036449           56 LGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISK----ASYENVSKKWIPELKHYAPGVPIILVGTKLDLRDDKQFFID  131 (197)
Q Consensus        56 ~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~----~s~~~~~~~~~~~i~~~~~~~~~ivv~nK~D~~~~~~~~~~  131 (197)
                      +.+||+||++.|.......+..+|++|+|+|++++    ++.+.+     ..+... ...|+++++||+|+.....    
T Consensus        83 i~iiDtPGh~~f~~~~~~~~~~~D~~ilVvda~~g~~~~qt~e~l-----~~~~~l-~~~~iivv~NK~Dl~~~~~----  152 (408)
T 1s0u_A           83 VSFVDSPGHETLMATMLSGASLMDGAILVIAANEPCPQPQTKEHL-----MALEIL-GIDKIIIVQNKIDLVDEKQ----  152 (408)
T ss_dssp             EEEEECSSHHHHHHHHHTTCSCCSEEEEEEETTSCSSCHHHHHHH-----HHHHHT-TCCCEEEEEECTTSSCTTT----
T ss_pred             EEEEECCCHHHHHHHHHHhHhhCCEEEEEEECCCCCCCchhHHHH-----HHHHHc-CCCeEEEEEEccCCCCHHH----
Confidence            89999999999988887888899999999999965    333333     222222 2358999999999976431    


Q ss_pred             CCCCCcccHHHHHHHHHHh--CCCceEEeccCCCCCHHHHHHHHHHHHcCC
Q 036449          132 HPGAVPISTAQGEELRKLI--GAPAYIECSSKTQQNVKAVFDAAIRVVLQP  180 (197)
Q Consensus       132 ~~~~~~~~~~~~~~~~~~~--~~~~~~~~sa~~~~~i~~l~~~i~~~~~~~  180 (197)
                          .....++..++...+  ...+++++||++|.|+++++++|.+.+...
T Consensus       153 ----~~~~~~~i~~~l~~~~~~~~~~i~vSA~~g~gi~~L~~~l~~~i~~~  199 (408)
T 1s0u_A          153 ----AEENYEQIKEFVKGTIAENAPIIPISAHHEANIDVLLKAIQDFIPTP  199 (408)
T ss_dssp             ----TTTHHHHHHHHHTTSTTTTCCEEEC------CHHHHHHHHHHHSCCC
T ss_pred             ----HHHHHHHHHHHHhhcCCCCCeEEEeeCCCCCCHHHHHHHHHHhCCCC
Confidence                112345556665542  223899999999999999999999877654

>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A

Probab=99.90  E-value=7e-23  Score=149.95  Aligned_cols=163  Identities=17%  Similarity=0.143  Sum_probs=106.2

Q ss_pred             CceeEEEEEcCCCCCHHHHHHHHhhCC-CCCCCCCc--eeeeeeEEEEECCeEEEEEEEeCCCccccccccc--------
Q 036449            4 SRFIKCVTVGDGAVGKTCLLISYTSNT-FPTDYVPT--VFDNFSANVVVNGSTVNLGLWDTAGQEDYNRLRP--------   72 (197)
Q Consensus         4 ~~~~~i~v~G~~~~GKstli~~~~~~~-~~~~~~~~--~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~--------   72 (197)
                      .+.++|+++|.+|+|||||++++++.. +.....++  +..........++  ..+.+|||||+..+.....        
T Consensus        20 ~~~~~I~lvG~~g~GKStl~n~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~i~iiDTpG~~~~~~~~~~~~~~i~~   97 (260)
T 2xtp_A           20 RSELRIILVGKTGTGKSAAGNSILRKQAFESKLGSQTLTKTCSKSQGSWGN--REIVIIDTPDMFSWKDHCEALYKEVQR   97 (260)
T ss_dssp             -CCEEEEEEECTTSCHHHHHHHHHTSCCSCCCTTSCCCCCSCEEEEEEETT--EEEEEEECCGGGGSSCCCHHHHHHHHH
T ss_pred             CCceEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCceeeeeEEEEEEeCC--CEEEEEECcCCCCCCCCHHHHHHHHHH
Confidence            356999999999999999999999876 44444343  3333344455566  4577999999876543222        


Q ss_pred             ---cCcCCCcEEEEEEeCCCchhHHHHHHHHHHHHhhhCCCCCEEEEee-CCcccCCcccccCCCCCCcccH-------H
Q 036449           73 ---LSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGT-KLDLRDDKQFFIDHPGAVPIST-------A  141 (197)
Q Consensus        73 ---~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~~~ivv~n-K~D~~~~~~~~~~~~~~~~~~~-------~  141 (197)
                         .++..+|++|+|+|+++..........++..+.......|.++|+| |+|+....           ...       .
T Consensus        98 ~~~~~~~~~d~il~V~d~~~~~~~~~~~~~~l~~~~~~~~~~~~i~vv~nK~Dl~~~~-----------~~~~i~~~~~~  166 (260)
T 2xtp_A           98 CYLLSAPGPHVLLLVTQLGRYTSQDQQAAQRVKEIFGEDAMGHTIVLFTHKEDLNGGS-----------LMDYMHDSDNK  166 (260)
T ss_dssp             HHHHHTTCCSEEEEEEETTCCCHHHHHHHHHHHHHHCGGGGGGEEEEEECGGGGTTCC-----------HHHHHHHCCCH
T ss_pred             HHHhcCCCCcEEEEEEeCCCCCHHHHHHHHHHHHHhCchhhccEEEEEEcccccCCcc-----------HHHHHHhcchH
Confidence               2568899999999998633222111223332211111356666666 99997432           111       3


Q ss_pred             HHHHHHHHhCCCc--e--EEeccCCCCCHHHHHHHHHHHHcC
Q 036449          142 QGEELRKLIGAPA--Y--IECSSKTQQNVKAVFDAAIRVVLQ  179 (197)
Q Consensus       142 ~~~~~~~~~~~~~--~--~~~sa~~~~~i~~l~~~i~~~~~~  179 (197)
                      +++.+....+...  +  +++||+++.|++++|++|.+.+..
T Consensus       167 ~~~~~~~~~~~~~~~~~~~~~SA~~~~gv~~l~~~i~~~~~~  208 (260)
T 2xtp_A          167 ALSKLVAACGGRICAFNNRAEGSNQDDQVKELMDCIEDLLME  208 (260)
T ss_dssp             HHHHHHHHTTTCEEECCTTCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhCCeEEEecCcccccccHHHHHHHHHHHHHHHHh
Confidence            3445666665411  2  789999999999999999998765

>2ywe_A GTP-binding protein LEPA; G domain, beta-barrel, ferredoxin-like domain, structural GE NPPSFA; 2.05A {Aquifex aeolicus} PDB: 2ywf_A* 2ywg_A* 2ywh_A*

Probab=99.90  E-value=1.5e-22  Score=162.20  Aligned_cols=165  Identities=16%  Similarity=0.218  Sum_probs=117.4

Q ss_pred             CCCCceeEEEEEcCCCCCHHHHHHHHhhC--CCCCC-----CCCce------eeee---eEEEEE---CCeEEEEEEEeC
Q 036449            1 MSASRFIKCVTVGDGAVGKTCLLISYTSN--TFPTD-----YVPTV------FDNF---SANVVV---NGSTVNLGLWDT   61 (197)
Q Consensus         1 m~~~~~~~i~v~G~~~~GKstli~~~~~~--~~~~~-----~~~~~------~~~~---~~~~~~---~~~~~~~~i~D~   61 (197)
                      |+.++..+|+++|+.++|||||+++++..  .+...     ...+.      +...   ...+.+   ++..+.+++|||
T Consensus         1 ~~~~~irnI~IiGh~d~GKTTLi~rLl~~tg~i~~~~~~~~~~D~~~~ErerGITI~~~~~~~~~~~~dg~~~~inliDT   80 (600)
T 2ywe_A            1 MEQKNVRNFCIIAHVDHGKSTLADRLLEYTGAISEREKREQLLDTLDVERERGITVKMQAVRMFYKAKDGNTYKLHLIDT   80 (600)
T ss_dssp             CCGGGEEEEEEECC--CCHHHHHHHHHHHHTC-----------------------CCCCSEEEEEECTTSCEEEEEEECC
T ss_pred             CCccCceEEEEECCCCCCHHHHHHHHHhccCCcccccccccccccchhhhcccceeeeeEEEEEEEcCCCCeEEEEEEEC
Confidence            55677899999999999999999999752  22111     00000      0000   111222   455688999999


Q ss_pred             CCccccccccccCcCCCcEEEEEEeCCCchhHHHHHHHHHHHHhhhCCCCCEEEEeeCCcccCCcccccCCCCCCcccHH
Q 036449           62 AGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPISTA  141 (197)
Q Consensus        62 ~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~  141 (197)
                      ||+.+|...+...+..+|++|+|+|++++.+.+.. ..|.....   .+.|+++|+||+|+...+.            ..
T Consensus        81 PGh~dF~~ev~r~l~~aD~aILVVDa~~gv~~qt~-~~~~~a~~---~~ipiIvviNKiDl~~a~~------------~~  144 (600)
T 2ywe_A           81 PGHVDFSYEVSRALAACEGALLLIDASQGIEAQTV-ANFWKAVE---QDLVIIPVINKIDLPSADV------------DR  144 (600)
T ss_dssp             CCSGGGHHHHHHHHHTCSEEEEEEETTTBCCHHHH-HHHHHHHH---TTCEEEEEEECTTSTTCCH------------HH
T ss_pred             CCcHhHHHHHHHHHHhCCEEEEEEECCCCccHHHH-HHHHHHHH---CCCCEEEEEeccCccccCH------------HH
Confidence            99999988888889999999999999999888776 55555443   2689999999999965321            23


Q ss_pred             HHHHHHHHhCCC--ceEEeccCCCCCHHHHHHHHHHHHcCCC
Q 036449          142 QGEELRKLIGAP--AYIECSSKTQQNVKAVFDAAIRVVLQPP  181 (197)
Q Consensus       142 ~~~~~~~~~~~~--~~~~~sa~~~~~i~~l~~~i~~~~~~~~  181 (197)
                      ...++.+..+..  +++++||++|.|+++++++|.+.+....
T Consensus       145 v~~el~~~lg~~~~~vi~vSAktg~GI~~Lle~I~~~lp~p~  186 (600)
T 2ywe_A          145 VKKQIEEVLGLDPEEAILASAKEGIGIEEILEAIVNRIPPPK  186 (600)
T ss_dssp             HHHHHHHTSCCCGGGCEECBTTTTBSHHHHHHHHHHHSCCCC
T ss_pred             HHHHHHHhhCCCcccEEEEEeecCCCchHHHHHHHHhccccc
Confidence            345566666653  4899999999999999999999887654

>2xtz_A Guanine nucleotide-binding protein alpha-1 subuni; hydrolase, G-protein signaling, SELF-activation, RAS-like DO; HET: GSP; 2.34A {Arabidopsis thaliana}

Probab=99.89  E-value=2.2e-23  Score=157.78  Aligned_cols=127  Identities=17%  Similarity=0.155  Sum_probs=92.5

Q ss_pred             eEEEEEEEeCCCccccccccccCcCCCcEEEEEEeCC----------CchhHHHHHHHHHHHHhhh--CCCCCEEEEeeC
Q 036449           52 STVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLI----------SKASYENVSKKWIPELKHY--APGVPIILVGTK  119 (197)
Q Consensus        52 ~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~----------~~~s~~~~~~~~~~~i~~~--~~~~~~ivv~nK  119 (197)
                      ..+.+++||++|++.+++.|..++++++++|+|||++          +..+++.. ..|+..+...  .+++|+++|+||
T Consensus       181 ~~v~l~iwDtaGQe~~r~~~~~y~~~~~~iI~v~dis~ydq~l~e~~~~~s~~~~-~~~~~~i~~~~~~~~~piiLvgNK  259 (354)
T 2xtz_A          181 SGEVYRLFDVGGQRNERRKWIHLFEGVTAVIFCAAISEYDQTLFEDEQKNRMMET-KELFDWVLKQPCFEKTSFMLFLNK  259 (354)
T ss_dssp             ---EEEEEEECCSTTGGGGTGGGCTTEEEEEEEEEGGGTTCBCSSCTTSBHHHHH-HHHHHHHHTCGGGSSCEEEEEEEC
T ss_pred             cceeeEEEECCCchhhhHHHHHHhCCCCEEEEEEECcccccccccccchhHHHHH-HHHHHHHHhccccCCCeEEEEEEC
Confidence            5688999999999999999999999999999999998          78889988 5565555442  268999999999


Q ss_pred             CcccCCccc---------ccCCC--CCCcccHHHHHHHHHHh--------------C-CCceEEeccCCCCCHHHHHHHH
Q 036449          120 LDLRDDKQF---------FIDHP--GAVPISTAQGEELRKLI--------------G-APAYIECSSKTQQNVKAVFDAA  173 (197)
Q Consensus       120 ~D~~~~~~~---------~~~~~--~~~~~~~~~~~~~~~~~--------------~-~~~~~~~sa~~~~~i~~l~~~i  173 (197)
                      +|+..++..         ..+..  .....+.+++..++...              + ...+++|||+++.||+++|+++
T Consensus       260 ~DL~~~k~~~v~l~~~~~fp~y~~~~~~~~~~~~a~~~~~~~f~~l~~~~~~~~~~~~~~~~~eTSA~d~~nV~~vF~~v  339 (354)
T 2xtz_A          260 FDIFEKKVLDVPLNVCEWFRDYQPVSSGKQEIEHAYEFVKKKFEELYYQNTAPDRVDRVFKIYRTTALDQKLVKKTFKLV  339 (354)
T ss_dssp             HHHHHHHTTTSCGGGSGGGTTCCCCSSHHHHHHHHHHHHHHHHHHHHHHTCCTTTTTSCEEEEECCTTCHHHHHHHHHHH
T ss_pred             cchhhhhcccccccccccccccccccCCCcCHHHHHHHHHHHHHHhhhccccccccCcceEEEEEEeecchhHHHHHHHH
Confidence            999653320         00000  00112356677764431              1 2136899999999999999999


Q ss_pred             HHHHcC
Q 036449          174 IRVVLQ  179 (197)
Q Consensus       174 ~~~~~~  179 (197)
                      .+.+..
T Consensus       340 ~~~I~~  345 (354)
T 2xtz_A          340 DETLRR  345 (354)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            988753

>3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding, HYDR magnesium, metal-binding, nucleotide-binding, potassium, TR processing; HET: GDP FON; 3.20A {Nostoc SP}

Probab=99.89  E-value=3.8e-23  Score=161.74  Aligned_cols=154  Identities=23%  Similarity=0.290  Sum_probs=107.0

Q ss_pred             ceeEEEEEcCCCCCHHHHHHHHhhCC--CCCCCCCceeeeeeEEEEECCeEEEEEEEeCCCcccccccc--------ccC
Q 036449            5 RFIKCVTVGDGAVGKTCLLISYTSNT--FPTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQEDYNRLR--------PLS   74 (197)
Q Consensus         5 ~~~~i~v~G~~~~GKstli~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~--------~~~   74 (197)
                      ..++|+++|.+|+|||||++++.+..  +.....+++.+.....+.+++  ..+.+|||||+..+...+        ..+
T Consensus       223 ~~~kV~ivG~~nvGKSSLln~L~~~~~a~v~~~~gtT~d~~~~~i~~~g--~~v~liDT~G~~~~~~~ve~~gi~~~~~~  300 (462)
T 3geh_A          223 TGLKVAIVGRPNVGKSSLLNAWSQSDRAIVTDLPGTTRDVVESQLVVGG--IPVQVLDTAGIRETSDQVEKIGVERSRQA  300 (462)
T ss_dssp             HCEEEEEEECTTSSHHHHHHHHHHHHBSCCSCCTTCCHHHHHHEEEETT--EEEEECC--------------------CC
T ss_pred             CCCEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCeeEEEEEEEEEECC--EEEEEEECCccccchhHHHHHHHHHHhhh
Confidence            34789999999999999999998753  345556666666666677777  456799999986554322        236


Q ss_pred             cCCCcEEEEEEeCCCchhHHHHHHHHHHHHhhhCCCCCEEEEeeCCcccCCcccccCCCCCCcccHHHHHHHHHHhCCCc
Q 036449           75 YRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPISTAQGEELRKLIGAPA  154 (197)
Q Consensus        75 ~~~~~~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  154 (197)
                      +..+|++++|+|.+++.+...  ..|+..+.    +.|+++|+||+|+.+...          ..  ....+.  .+ .+
T Consensus       301 ~~~aD~vl~VvD~s~~~~~~~--~~i~~~l~----~~piivV~NK~Dl~~~~~----------~~--~~~~~~--~~-~~  359 (462)
T 3geh_A          301 ANTADLVLLTIDAATGWTTGD--QEIYEQVK----HRPLILVMNKIDLVEKQL----------IT--SLEYPE--NI-TQ  359 (462)
T ss_dssp             CCSCSEEEEEEETTTCSCHHH--HHHHHHHT----TSCEEEEEECTTSSCGGG----------ST--TCCCCT--TC-CC
T ss_pred             hhcCCEEEEEeccCCCCCHHH--HHHHHhcc----CCcEEEEEECCCCCcchh----------hH--HHHHhc--cC-Cc
Confidence            788999999999999877655  35555553    469999999999976543          11  011111  23 37


Q ss_pred             eEEeccCCCCCHHHHHHHHHHHHcCCC
Q 036449          155 YIECSSKTQQNVKAVFDAAIRVVLQPP  181 (197)
Q Consensus       155 ~~~~sa~~~~~i~~l~~~i~~~~~~~~  181 (197)
                      ++++||++|.|+++++++|.+.+....
T Consensus       360 ~i~iSAktg~Gi~eL~~~i~~~~~~~~  386 (462)
T 3geh_A          360 IVHTAAAQKQGIDSLETAILEIVQTGK  386 (462)
T ss_dssp             EEEEBTTTTBSHHHHHHHHHHHHTTSS
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHhccC
Confidence            999999999999999999999887653

>3ohm_A Guanine nucleotide-binding protein G(Q) subunit A; PH domain, EF hand, TIM barrel, C2 domain, GTPase, lipase, C binding, GTP binding; HET: GDP; 2.70A {Mus musculus} PDB: 2bcj_Q* 2rgn_A* 3ah8_A*

Probab=99.89  E-value=1.7e-23  Score=156.41  Aligned_cols=126  Identities=17%  Similarity=0.135  Sum_probs=94.5

Q ss_pred             EEEEEEEeCCCccccccccccCcCCCcEEEEEEeCC----------CchhHHHHHHHHHHHHh-hhC-CCCCEEEEeeCC
Q 036449           53 TVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLI----------SKASYENVSKKWIPELK-HYA-PGVPIILVGTKL  120 (197)
Q Consensus        53 ~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~----------~~~s~~~~~~~~~~~i~-~~~-~~~~~ivv~nK~  120 (197)
                      .+.+++||++||+.+++.|..++++++++|+|||++          +..++.+. ..|+..+. ... +++|+++++||+
T Consensus       166 ~v~l~iwDtgGQe~~R~~w~~yf~~~~~iIfV~dls~ydq~l~d~~~~nr~~es-~~~~~~i~~~~~~~~~~iiL~~NK~  244 (327)
T 3ohm_A          166 SVIFRMVDVGGQRSERRKWIHCFENVTSIMFLVALSEYDQVLVESDNENRMEES-KALFRTIITYPWFQNSSVILFLNKK  244 (327)
T ss_dssp             TEEEEEEEECCSHHHHTTGGGGCSSCSEEEEEEEGGGGGCBCSSCTTSBHHHHH-HHHHHHHHTSGGGTTCEEEEEEECH
T ss_pred             ceeeEEEEcCCchhHHHHHHHHhCCCCEEEEEEECccccccccccccHhHHHHH-HHHHHHHhhhhccCCceEEEEEECc
Confidence            378999999999999999999999999999999665          66778777 34444443 333 689999999999


Q ss_pred             cccCCccc---c----cCCCCCCcccHHHHHHHHH----------HhCCCceEEeccCCCCCHHHHHHHHHHHHcCCC
Q 036449          121 DLRDDKQF---F----IDHPGAVPISTAQGEELRK----------LIGAPAYIECSSKTQQNVKAVFDAAIRVVLQPP  181 (197)
Q Consensus       121 D~~~~~~~---~----~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~sa~~~~~i~~l~~~i~~~~~~~~  181 (197)
                      |+..++..   .    .+.. ....+.+++..+..          ..+. .+++|||+++.||+++|..+.+.+.+..
T Consensus       245 DL~~~ki~~~~l~~~fp~y~-g~~~~~e~a~~fi~~~F~~~~~~~~~~i-~~~~TsA~d~~nV~~vF~~v~~~Il~~~  320 (327)
T 3ohm_A          245 DLLEEKIMYSHLVDYFPEYD-GPQRDAQAAREFILKMFVDLNPDSDKII-YSHFTCATDTENIRFVFAAVKDTILQLN  320 (327)
T ss_dssp             HHHHHHTTTSCGGGTCTTCC-SCSSCHHHHHHHHHHHHHSSCTTTTSCE-EEEECCTTCHHHHHHHHHHHHHHHHHTT
T ss_pred             hhhhhhhccchHhhhchhcc-CCCCCHHHHHHHHHHHHHhhcccccCCc-EEEEEEeecCHHHHHHHHHHHHHHHHHh
Confidence            99754310   0    0111 11356777877743          3344 6789999999999999999999887653

>1lnz_A SPO0B-associated GTP-binding protein; GTPase, OBG, stringent factor, stress response, sporulation, large G-protein, structural genomics, PSI; HET: G4P; 2.60A {Bacillus subtilis} SCOP: b.117.1.1 c.37.1.8

Probab=99.89  E-value=1.4e-23  Score=158.43  Aligned_cols=160  Identities=19%  Similarity=0.213  Sum_probs=116.5

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhhCCCC-CCCCCceeeeeeEEEEECCeEEEEEEEeCCCccc----cccccccCcC---CC
Q 036449            7 IKCVTVGDGAVGKTCLLISYTSNTFP-TDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQED----YNRLRPLSYR---GA   78 (197)
Q Consensus         7 ~~i~v~G~~~~GKstli~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~----~~~~~~~~~~---~~   78 (197)
                      .+|+++|.++||||||++++...... ..+..++.......+.+++ ...+.+||+||..+    +..+...+++   .+
T Consensus       159 a~V~lvG~~nvGKSTLln~L~~~~~~i~~~~ftTl~p~~g~v~~~~-~~~~~l~DtPG~i~~a~~~~~l~~~fl~~i~~~  237 (342)
T 1lnz_A          159 ADVGLVGFPSVGKSTLLSVVSSAKPKIADYHFTTLVPNLGMVETDD-GRSFVMADLPGLIEGAHQGVGLGHQFLRHIERT  237 (342)
T ss_dssp             CCEEEESSTTSSHHHHHHHSEEECCEESSTTSSCCCCCEEEEECSS-SCEEEEEEHHHHHHHTTCTTTTHHHHHHHHHHC
T ss_pred             CeeeeeCCCCCCHHHHHHHHHcCCCccccCCccccCceEEEEEeCC-CceEEEecCCCCcccccccchhHHHHHHHHHhc
Confidence            36899999999999999999976532 3333333222222344443 14578999999643    3334444444   49


Q ss_pred             cEEEEEEeCCC---chhHHHHHHHHHHHHhhhC---CCCCEEEEeeCCcccCCcccccCCCCCCcccHHHHHHHHHHhCC
Q 036449           79 DVFILAFSLIS---KASYENVSKKWIPELKHYA---PGVPIILVGTKLDLRDDKQFFIDHPGAVPISTAQGEELRKLIGA  152 (197)
Q Consensus        79 ~~~i~v~d~~~---~~s~~~~~~~~~~~i~~~~---~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  152 (197)
                      +++|+|+|+++   +.+++.+ ..|...+....   .+.|+++|+||+|+...              .+....+++.++.
T Consensus       238 d~ll~VvD~s~~~~~~~~~~~-~~~~~eL~~~~~~l~~~p~ilV~NK~Dl~~~--------------~e~~~~l~~~l~~  302 (342)
T 1lnz_A          238 RVIVHVIDMSGLEGRDPYDDY-LTINQELSEYNLRLTERPQIIVANKMDMPEA--------------AENLEAFKEKLTD  302 (342)
T ss_dssp             CEEEEEEESSCSSCCCHHHHH-HHHHHHHHHSCSSTTTSCBCBEEECTTSTTH--------------HHHHHHHHHHCCS
T ss_pred             cEEEEEEECCcccccChHHHH-HHHHHHHHHhhhhhcCCCEEEEEECccCCCC--------------HHHHHHHHHHhhc
Confidence            99999999998   7888887 68888887764   37999999999999542              1344566666652


Q ss_pred             -CceEEeccCCCCCHHHHHHHHHHHHcCCCc
Q 036449          153 -PAYIECSSKTQQNVKAVFDAAIRVVLQPPK  182 (197)
Q Consensus       153 -~~~~~~sa~~~~~i~~l~~~i~~~~~~~~~  182 (197)
                       .+++++||+++.|+++++++|.+.+...+.
T Consensus       303 ~~~v~~iSA~tg~gi~eL~~~l~~~l~~~~~  333 (342)
T 1lnz_A          303 DYPVFPISAVTREGLRELLFEVANQLENTPE  333 (342)
T ss_dssp             CCCBCCCSSCCSSTTHHHHHHHHHHHTSCCC
T ss_pred             CCCEEEEECCCCcCHHHHHHHHHHHHhhCcc
Confidence             379999999999999999999999977654

>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}

Probab=99.89  E-value=3.2e-22  Score=144.69  Aligned_cols=167  Identities=17%  Similarity=0.138  Sum_probs=107.8

Q ss_pred             CCceeEEEEEcCCCCCHHHHHHHHhhCCCCCCCCC---ceeeeeeEEEEECCeEEEEEEEeCCCc-----------cccc
Q 036449            3 ASRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVP---TVFDNFSANVVVNGSTVNLGLWDTAGQ-----------EDYN   68 (197)
Q Consensus         3 ~~~~~~i~v~G~~~~GKstli~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~i~D~~G~-----------~~~~   68 (197)
                      ..+.++|+++|.+|+|||||++++++..+.....+   ++.........+++  ..+.+|||||.           ..+.
T Consensus        26 ~~~~~~i~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~--~~i~liDTpG~~~~~~~~~~~~~~~~  103 (239)
T 3lxx_A           26 RNSQLRIVLVGKTGAGKSATGNSILGRKVFHSGTAAKSITKKCEKRSSSWKE--TELVVVDTPGIFDTEVPNAETSKEII  103 (239)
T ss_dssp             --CEEEEEEECCTTSSHHHHHHHHHTSCCSCC-------CCSCEEEEEEETT--EEEEEEECCSCC-----CHHHHHHHH
T ss_pred             CCCceEEEEECCCCCCHHHHHHHHcCCCcCccCCCCCceeeeEEEEEEEeCC--ceEEEEECCCccCCCCCHHHHHHHHH
Confidence            34679999999999999999999998877544333   22333344455666  45779999994           2344


Q ss_pred             cccccCcCCCcEEEEEEeCCCchhHHHHHHHHHHHHhhhC---CCCCEEEEeeCCcccCCcccccCCCCCCcccHHHHHH
Q 036449           69 RLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYA---PGVPIILVGTKLDLRDDKQFFIDHPGAVPISTAQGEE  145 (197)
Q Consensus        69 ~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~i~~~~---~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~  145 (197)
                      ......+..+|++|+|+|+++.....   ..++..+....   ...|+++|+||+|+......    ........+..+.
T Consensus       104 ~~~~~~~~~~~~~l~v~d~~~~~~~~---~~~l~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~----~~~i~~~~~~l~~  176 (239)
T 3lxx_A          104 RCILLTSPGPHALLLVVPLGRYTEEE---HKATEKILKMFGERARSFMILIFTRKDDLGDTNL----HDYLREAPEDIQD  176 (239)
T ss_dssp             HHHHHTTTCCSEEEEEEETTCCSSHH---HHHHHHHHHHHHHHHGGGEEEEEECGGGC----------------CHHHHH
T ss_pred             HHHHhcCCCCcEEEEEeeCCCCCHHH---HHHHHHHHHHhhhhccceEEEEEeCCccCCcccH----HHHHHhchHHHHH
Confidence            55555677899999999998654422   22333332211   24699999999999654320    0000011245778


Q ss_pred             HHHHhCCCceEEeccCCC-----CCHHHHHHHHHHHHcC
Q 036449          146 LRKLIGAPAYIECSSKTQ-----QNVKAVFDAAIRVVLQ  179 (197)
Q Consensus       146 ~~~~~~~~~~~~~sa~~~-----~~i~~l~~~i~~~~~~  179 (197)
                      +.+..+. .++.+++..+     .++.++|..+.+.+.+
T Consensus       177 l~~~~~~-~~~~~~~~~~~~~~~~~v~~ll~~i~~~~~~  214 (239)
T 3lxx_A          177 LMDIFGD-RYCALNNKATGAEQEAQRAQLLGLIQRVVRE  214 (239)
T ss_dssp             HHHHHSS-SEEECCTTCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHcCC-EEEEEECCCCccccHHHHHHHHHHHHHHHHH
Confidence            8888887 7888877643     6899999999888754

>1wb1_A Translation elongation factor SELB; selenocysteine, protein synthesis, selenium, ribosome; HET: GDP DXC; 3.0A {Methanococcus maripaludis} SCOP: b.43.3.1 b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1wb2_A* 1wb3_A*

Probab=99.89  E-value=1e-22  Score=160.52  Aligned_cols=161  Identities=19%  Similarity=0.154  Sum_probs=110.1

Q ss_pred             CceeEEEEEcCCCCCHHHHHHHHhhCC-------CCCCCCC-ceeeeeeEEEEECCeEEEEEEEeCCCccccccccccCc
Q 036449            4 SRFIKCVTVGDGAVGKTCLLISYTSNT-------FPTDYVP-TVFDNFSANVVVNGSTVNLGLWDTAGQEDYNRLRPLSY   75 (197)
Q Consensus         4 ~~~~~i~v~G~~~~GKstli~~~~~~~-------~~~~~~~-~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~   75 (197)
                      .+.++|+++|+.++|||||++++.+..       +..+..+ .+.+.....+.+++  ..+.+|||||+++|.......+
T Consensus        17 m~~~~I~iiG~~d~GKSTLi~~L~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~--~~i~iiDtPGh~~~~~~~~~~~   94 (482)
T 1wb1_A           17 FKNINLGIFGHIDHGKTTLSKVLTEIASTSAHDKLPESQKRGITIDIGFSAFKLEN--YRITLVDAPGHADLIRAVVSAA   94 (482)
T ss_dssp             CEEEEEEEEECTTSSHHHHHHHHHTTC--------------------CCCEEEETT--EEEEECCCSSHHHHHHHHHHHT
T ss_pred             CCCCEEEEECCCCChHHHHHHHHHCCCcccccccccccccCccEEecceEEEEECC--EEEEEEECCChHHHHHHHHHHH
Confidence            457999999999999999999998765       1111111 11111112233455  6788999999999988888889


Q ss_pred             CCCcEEEEEEeCCCchhHHHHHHHHHHHHhhhCCCCCEEEEeeCCcccCCcccccCCCCCCcccHHHHHHHHHHh-C--C
Q 036449           76 RGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPISTAQGEELRKLI-G--A  152 (197)
Q Consensus        76 ~~~~~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~--~  152 (197)
                      ..+|++|+|+|++++...+..  ..+..+...  ++|+++|+||+|+.+...        .....++..++.... +  .
T Consensus        95 ~~aD~~ilVvda~~g~~~qt~--e~l~~~~~~--~ip~IvviNK~Dl~~~~~--------~~~~~~~l~~~l~~~~~~~~  162 (482)
T 1wb1_A           95 DIIDLALIVVDAKEGPKTQTG--EHMLILDHF--NIPIIVVITKSDNAGTEE--------IKRTEMIMKSILQSTHNLKN  162 (482)
T ss_dssp             TSCCEEEEEEETTTCSCHHHH--HHHHHHHHT--TCCBCEEEECTTSSCHHH--------HHHHHHHHHHHHHHSSSGGG
T ss_pred             hhCCEEEEEEecCCCccHHHH--HHHHHHHHc--CCCEEEEEECCCcccchh--------HHHHHHHHHHHHhhhccccc
Confidence            999999999999984322222  222333333  688899999999975321        012234455555544 1  2


Q ss_pred             CceEEeccCCCCCHHHHHHHHHHHHc
Q 036449          153 PAYIECSSKTQQNVKAVFDAAIRVVL  178 (197)
Q Consensus       153 ~~~~~~sa~~~~~i~~l~~~i~~~~~  178 (197)
                      .+++++||++|.|+++++++|.+.+.
T Consensus       163 ~~ii~vSA~~g~gI~~L~~~L~~~i~  188 (482)
T 1wb1_A          163 SSIIPISAKTGFGVDELKNLIITTLN  188 (482)
T ss_dssp             CCEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred             ceEEEEECcCCCCHHHHHHHHHHhhc
Confidence            38999999999999999999999774

>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1

Probab=99.89  E-value=1.5e-22  Score=158.30  Aligned_cols=159  Identities=20%  Similarity=0.197  Sum_probs=106.7

Q ss_pred             ceeEEEEEcCCCCCHHHHHHHHhhCCC--CCCCCCceeeeeeEEEEECCeEEEEEEEeCCCcccccccc-----------
Q 036449            5 RFIKCVTVGDGAVGKTCLLISYTSNTF--PTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQEDYNRLR-----------   71 (197)
Q Consensus         5 ~~~~i~v~G~~~~GKstli~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~-----------   71 (197)
                      ..++|+++|++|||||||++++.+...  ...+++++.+.....+.+++.  .+.+|||||..++....           
T Consensus       179 ~~~kvaivG~~gvGKSTLln~l~g~~~~~v~~~~gtT~d~~~~~i~~~g~--~~~l~Dt~G~~~~~~~~~~~~e~~~~~~  256 (439)
T 1mky_A          179 DAIKVAIVGRPNVGKSTLFNAILNKERALVSPIPGTTRDPVDDEVFIDGR--KYVFVDTAGLRRKSRVEPRTVEKYSNYR  256 (439)
T ss_dssp             SCEEEEEECSTTSSHHHHHHHHHTSTTEEECCCC------CCEEEEETTE--EEEESSCSCC-----------CCSCCHH
T ss_pred             cCceEEEECCCCCCHHHHHHHHhCCcccccCCCCCCcCCceEEEEEECCE--EEEEEECCCCccccccchhhHHHHHHHH
Confidence            458999999999999999999998754  345555555555666777775  46799999985433221           


Q ss_pred             -ccCcCCCcEEEEEEeCCCchhHHHHHHHHHHHHhhhCCCCCEEEEeeCCcccCCcccccCCCCCCcccHHHHH-HHHHH
Q 036449           72 -PLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPISTAQGE-ELRKL  149 (197)
Q Consensus        72 -~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~-~~~~~  149 (197)
                       ..++..+|++++|+|++++.+.++.  .+...+...  +.|+++|+||+|+.+.+.          ...++.. .+.+.
T Consensus       257 ~~~~i~~ad~vllv~d~~~~~~~~~~--~i~~~l~~~--~~~~ilv~NK~Dl~~~~~----------~~~~~~~~~~~~~  322 (439)
T 1mky_A          257 VVDSIEKADVVVIVLDATQGITRQDQ--RMAGLMERR--GRASVVVFNKWDLVVHRE----------KRYDEFTKLFREK  322 (439)
T ss_dssp             HHHHHHHCSEEEEEEETTTCCCHHHH--HHHHHHHHT--TCEEEEEEECGGGSTTGG----------GCHHHHHHHHHHH
T ss_pred             HHHHHhhCCEEEEEEeCCCCCCHHHH--HHHHHHHHc--CCCEEEEEECccCCCchh----------hHHHHHHHHHHHH
Confidence             1235568999999999988776553  344444443  799999999999975432          2222221 22222


Q ss_pred             h---CCCceEEeccCCCCCHHHHHHHHHHHHcC
Q 036449          150 I---GAPAYIECSSKTQQNVKAVFDAAIRVVLQ  179 (197)
Q Consensus       150 ~---~~~~~~~~sa~~~~~i~~l~~~i~~~~~~  179 (197)
                      +   +..+++++||++|.|++++|+.+.+.+..
T Consensus       323 ~~~~~~~~~~~~SA~~g~gv~~l~~~i~~~~~~  355 (439)
T 1mky_A          323 LYFIDYSPLIFTSADKGWNIDRMIDAMNLAYAS  355 (439)
T ss_dssp             CGGGTTSCEEECBTTTTBSHHHHHHHHHHHHHH
T ss_pred             hccCCCCcEEEEECCCCCCHHHHHHHHHHHHHh
Confidence            2   23389999999999999999999887644

>3cb4_D GTP-binding protein LEPA; GTPase, OB-fold, membrane, nucleotide-binding, translation; 2.80A {Escherichia coli} PDB: 3deg_C*

Probab=99.89  E-value=1.2e-22  Score=162.90  Aligned_cols=162  Identities=17%  Similarity=0.233  Sum_probs=113.0

Q ss_pred             CceeEEEEEcCCCCCHHHHHHHHhhCC--CCCC-----CCCc------eeeee---eEEEEE---CCeEEEEEEEeCCCc
Q 036449            4 SRFIKCVTVGDGAVGKTCLLISYTSNT--FPTD-----YVPT------VFDNF---SANVVV---NGSTVNLGLWDTAGQ   64 (197)
Q Consensus         4 ~~~~~i~v~G~~~~GKstli~~~~~~~--~~~~-----~~~~------~~~~~---~~~~~~---~~~~~~~~i~D~~G~   64 (197)
                      ++..+|+++|+.++|||||+++++...  +...     ...+      .+...   ...+.+   ++..+.+++|||||+
T Consensus         2 ~~irnI~IiGh~d~GKTTLi~rLl~~tg~i~~~~~~~~~~D~~~~ErerGiTi~~~~~~~~~~~~~g~~~~l~liDTPGh   81 (599)
T 3cb4_D            2 KNIRNFSIIAHIDHGKSTLSDRIIQICGGLSDREMEAQVLDSMDLERERGITIKAQSVTLDYKASDGETYQLNFIDTPGH   81 (599)
T ss_dssp             TTEEEEEEECCC----CCHHHHHHHHTTC--------------------------CEEEEEEECTTSCEEEEEEEECCCC
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHhcCCcccccccccccccchhhhcccceeeeeEEEEEEecCCCCeEEEEEEECCCc
Confidence            356899999999999999999998632  2110     0000      01111   111222   455788999999999


Q ss_pred             cccccccccCcCCCcEEEEEEeCCCchhHHHHHHHHHHHHhhhCCCCCEEEEeeCCcccCCcccccCCCCCCcccHHHHH
Q 036449           65 EDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPISTAQGE  144 (197)
Q Consensus        65 ~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~  144 (197)
                      .+|...+...+..+|++|+|+|++++.+.+.. ..|..... .  +.|+++|+||+|+...+            ..+...
T Consensus        82 ~dF~~ev~~~l~~aD~aILVVDa~~gv~~qt~-~~~~~~~~-~--~ipiIvViNKiDl~~a~------------~~~v~~  145 (599)
T 3cb4_D           82 VDFSYEVSRSLAACEGALLVVDAGQGVEAQTL-ANCYTAME-M--DLEVVPVLNKIDLPAAD------------PERVAE  145 (599)
T ss_dssp             GGGHHHHHHHHHHCSEEEEEEETTTCCCTHHH-HHHHHHHH-T--TCEEEEEEECTTSTTCC------------HHHHHH
T ss_pred             hHHHHHHHHHHHHCCEEEEEEECCCCCCHHHH-HHHHHHHH-C--CCCEEEeeeccCccccc------------HHHHHH
Confidence            99998888889999999999999998777766 45555443 2  68999999999997532            123345


Q ss_pred             HHHHHhCCC--ceEEeccCCCCCHHHHHHHHHHHHcCCC
Q 036449          145 ELRKLIGAP--AYIECSSKTQQNVKAVFDAAIRVVLQPP  181 (197)
Q Consensus       145 ~~~~~~~~~--~~~~~sa~~~~~i~~l~~~i~~~~~~~~  181 (197)
                      ++.+.++..  +++++||++|.|+++++++|.+.+....
T Consensus       146 ei~~~lg~~~~~vi~vSAktg~GI~~Ll~~I~~~lp~p~  184 (599)
T 3cb4_D          146 EIEDIVGIDATDAVRCSAKTGVGVQDVLERLVRDIPPPE  184 (599)
T ss_dssp             HHHHHTCCCCTTCEEECTTTCTTHHHHHHHHHHHSCCCC
T ss_pred             HHHHHhCCCcceEEEeecccCCCchhHHHHHhhcCCCcc
Confidence            566666652  4899999999999999999999887654

>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}

Probab=99.89  E-value=4.1e-24  Score=167.01  Aligned_cols=152  Identities=16%  Similarity=0.159  Sum_probs=100.9

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhhCCCC--CCCCCceeeeeeEEEEECCeEEEEEEEeCCCcc--------ccccccccCcC
Q 036449            7 IKCVTVGDGAVGKTCLLISYTSNTFP--TDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQE--------DYNRLRPLSYR   76 (197)
Q Consensus         7 ~~i~v~G~~~~GKstli~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~--------~~~~~~~~~~~   76 (197)
                      .+|+++|.+|||||||++++.+..+.  ....+++.+.......+.+  ..+.+|||||++        .+...+..++.
T Consensus         4 ~~V~ivG~~nvGKStL~n~l~~~~~~~v~~~~g~T~d~~~~~~~~~~--~~~~l~DT~G~~~~~~~~~~~~~~~~~~~~~   81 (436)
T 2hjg_A            4 PVVAIVGRPNVGKSTIFNRIAGERISIVEDTPGVTRDRIYSSAEWLN--YDFNLIDTGGIDIGDEPFLAQIRQQAEIAMD   81 (436)
T ss_dssp             CEEEEECSTTSSHHHHHHHHEEEECC-----------CEEEECTTCS--SCCEEEC---------CHHHHHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCCceeecCCCCCccceEEEEEEECC--ceEEEEECCCCCCcchhHHHHHHHHHHHHHH
Confidence            68999999999999999999986553  3333333333333333334  467899999985        45566677888


Q ss_pred             CCcEEEEEEeCCCchhHHHHHHHHHHHHhhhCCCCCEEEEeeCCcccCCcccccCCCCCCcccHHHHHHHHHHhCCCceE
Q 036449           77 GADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPISTAQGEELRKLIGAPAYI  156 (197)
Q Consensus        77 ~~~~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  156 (197)
                      .+|++|+|+|++++.+..+.  .+...++.  .+.|+++|+||+|+.....              +..++. ..+...++
T Consensus        82 ~ad~il~vvD~~~~~~~~d~--~~~~~l~~--~~~pvilv~NK~D~~~~~~--------------~~~~~~-~lg~~~~~  142 (436)
T 2hjg_A           82 EADVIIFMVNGREGVTAADE--EVAKILYR--TKKPVVLAVNKLDNTEMRA--------------NIYDFY-SLGFGEPY  142 (436)
T ss_dssp             HCSEEEEEEETTTCSCHHHH--HHHHHHTT--CCSCEEEEEECCCC-------------------CCCSSG-GGSSCCCE
T ss_pred             hCCEEEEEEeCCCCCCHHHH--HHHHHHHH--cCCCEEEEEECccCccchh--------------hHHHHH-HcCCCCeE
Confidence            99999999999998776543  44455544  3789999999999865321              001122 24554789


Q ss_pred             EeccCCCCCHHHHHHHHHHHHcC
Q 036449          157 ECSSKTQQNVKAVFDAAIRVVLQ  179 (197)
Q Consensus       157 ~~sa~~~~~i~~l~~~i~~~~~~  179 (197)
                      ++||++|.|+.++++++.+.+.+
T Consensus       143 ~iSA~~g~gv~~L~~~i~~~l~~  165 (436)
T 2hjg_A          143 PISGTHGLGLGDLLDAVAEHFKN  165 (436)
T ss_dssp             ECBTTTTBTHHHHHHHHHHTGGG
T ss_pred             EEeCcCCCChHHHHHHHHHhcCc
Confidence            99999999999999999998864

>1zcb_A G alpha I/13; GTP-binding, lipoprotein, membrane, transducer, signaling PR; HET: GDP; 2.00A {Mus musculus} SCOP: a.66.1.1 c.37.1.8 PDB: 3ab3_A* 3cx8_A* 3cx7_A* 3cx6_A* 1zca_A*

Probab=99.89  E-value=5.2e-22  Score=150.83  Aligned_cols=124  Identities=15%  Similarity=0.098  Sum_probs=86.0

Q ss_pred             EEEEEEeCCCccccccccccCcCCCcEEEEEEeCCC----------chhHHHHHHHHHHHHhh-hC-CCCCEEEEeeCCc
Q 036449           54 VNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLIS----------KASYENVSKKWIPELKH-YA-PGVPIILVGTKLD  121 (197)
Q Consensus        54 ~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~----------~~s~~~~~~~~~~~i~~-~~-~~~~~ivv~nK~D  121 (197)
                      +.+++||++|++.++..|..++++++++|+|||+++          ..++.+. ..|+..+.. .. +++|+++++||+|
T Consensus       201 ~~l~i~Dt~Gq~~~r~~w~~~f~~~~~iIfv~dls~~dq~l~ed~~~n~~~es-~~~~~~i~~~~~~~~~piILv~NK~D  279 (362)
T 1zcb_A          201 VPFKMVDVGGQRSERKRWFECFDSVTSILFLVSSSEFDQVLMEDRQTNRLTES-LNIFETIVNNRVFSNVSIILFLNKTD  279 (362)
T ss_dssp             EEEEEEEECC-------CTTSCTTCCEEEEEEETTCTTCEETTEEEEEHHHHH-HHHHHHHHTCGGGTTSEEEEEEECHH
T ss_pred             eEEEEEeccchhhhhhhHHHHhCCCCEEEEEEECccccccccccccccHHHHH-HHHHHHHhcchhhCCCCEEEEEEChh
Confidence            778999999999999999999999999999999999          7788888 455554443 22 6899999999999


Q ss_pred             ccCCccc---c--cCCCCCC-cccHHHHHHHHH-----------HhCCCceEEeccCCCCCHHHHHHHHHHHHcC
Q 036449          122 LRDDKQF---F--IDHPGAV-PISTAQGEELRK-----------LIGAPAYIECSSKTQQNVKAVFDAAIRVVLQ  179 (197)
Q Consensus       122 ~~~~~~~---~--~~~~~~~-~~~~~~~~~~~~-----------~~~~~~~~~~sa~~~~~i~~l~~~i~~~~~~  179 (197)
                      +..+...   .  ..++... .++.+++..++.           ..+. .+++|||+++.||+++|+++.+.+..
T Consensus       280 L~~~ki~~~~l~~~fp~y~g~~~~~~e~~~~~~~~f~~l~~~~~~~~~-~~~~tSA~d~~nV~~vF~~v~~~i~~  353 (362)
T 1zcb_A          280 LLEEKVQVVSIKDYFLEFEGDPHCLRDVQKFLVECFRGKRRDQQQRPL-YHHFTTAINTENIRLVFRDVKDTILH  353 (362)
T ss_dssp             HHHHHTTTCCGGGTCTTCCSCTTCHHHHHHHHHHHHHTTCSSCC--CC-EEEECCTTCHHHHHHHHHHHHHHHHH
T ss_pred             hhhhhccccchhhcCccccCCCCCHHHHHHHHHHHHHHhhcccCCCce-EEEEEecCCchhHHHHHHHHHHHHHH
Confidence            9643210   0  0000001 145677777652           2234 68899999999999999999988754

>1kk1_A EIF2gamma; initiation of translation; HET: GNP; 1.80A {Pyrococcus abyssi} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1kjz_A* 1kk2_A* 1kk3_A* 1kk0_A* 2d74_A 2dcu_A*

Probab=99.88  E-value=8.3e-22  Score=152.89  Aligned_cols=164  Identities=18%  Similarity=0.137  Sum_probs=109.0

Q ss_pred             CCceeEEEEEcCCCCCHHHHHHHHhhCC---CCCCCCC--ceeeeeeE-EEEE-------------C--C----eEEEEE
Q 036449            3 ASRFIKCVTVGDGAVGKTCLLISYTSNT---FPTDYVP--TVFDNFSA-NVVV-------------N--G----STVNLG   57 (197)
Q Consensus         3 ~~~~~~i~v~G~~~~GKstli~~~~~~~---~~~~~~~--~~~~~~~~-~~~~-------------~--~----~~~~~~   57 (197)
                      ....++|+++|+.++|||||+++|.+..   +..+..+  |....+.. ....             +  +    ....+.
T Consensus         7 ~~~~~~I~iiG~~~~GKSTLi~~L~g~~~~~~~~e~~~giTi~~~~~~~~~~~~~~~~~y~~~~~~~~~g~~~~~~~~i~   86 (410)
T 1kk1_A            7 RQAEVNIGMVGHVDHGKTTLTKALTGVWTDTHSEELRRGITIKIGFADAEIRRCPNCGRYSTSPVCPYCGHETEFVRRVS   86 (410)
T ss_dssp             CSEEEEEEEECSTTSSHHHHHHHHHTCCCC--CGGGGSCSSSCCEEEEEEEEECTTTCCEESSSBCTTTCCBCEEEEEEE
T ss_pred             CCCccEEEEECCCCCCHHHHHHHHhCCccccChhhhcCCcEEEEeeeeeecccccccccccccccccccCcccccccEEE
Confidence            4567999999999999999999998532   2222222  22211111 1100             0  1    136789


Q ss_pred             EEeCCCccccccccccCcCCCcEEEEEEeCCCch----hHHHHHHHHHHHHhhhCCCCCEEEEeeCCcccCCcccccCCC
Q 036449           58 LWDTAGQEDYNRLRPLSYRGADVFILAFSLISKA----SYENVSKKWIPELKHYAPGVPIILVGTKLDLRDDKQFFIDHP  133 (197)
Q Consensus        58 i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~----s~~~~~~~~~~~i~~~~~~~~~ivv~nK~D~~~~~~~~~~~~  133 (197)
                      +|||||++.|.......+..+|++|+|+|++++.    +.+.+     ..+... ...|+++|+||+|+.+...      
T Consensus        87 iiDtPGh~~f~~~~~~~~~~~D~~ilVvda~~g~~~~qt~e~l-----~~~~~~-~~~~iivviNK~Dl~~~~~------  154 (410)
T 1kk1_A           87 FIDAPGHEALMTTMLAGASLMDGAILVIAANEPCPRPQTREHL-----MALQII-GQKNIIIAQNKIELVDKEK------  154 (410)
T ss_dssp             EEECSSHHHHHHHHHHCGGGCSEEEEEEETTSCSSCHHHHHHH-----HHHHHH-TCCCEEEEEECGGGSCHHH------
T ss_pred             EEECCChHHHHHHHHhhhhhCCEEEEEEECCCCCCChhHHHHH-----HHHHHc-CCCcEEEEEECccCCCHHH------
Confidence            9999999999887777788899999999999653    33332     222222 1358999999999976321      


Q ss_pred             CCCcccHHHHHHHHHHh--CCCceEEeccCCCCCHHHHHHHHHHHHcCC
Q 036449          134 GAVPISTAQGEELRKLI--GAPAYIECSSKTQQNVKAVFDAAIRVVLQP  180 (197)
Q Consensus       134 ~~~~~~~~~~~~~~~~~--~~~~~~~~sa~~~~~i~~l~~~i~~~~~~~  180 (197)
                        .....++..++....  ...+++++||++|.|+++++++|.+.+...
T Consensus       155 --~~~~~~~i~~~l~~~~~~~~~~i~vSA~~g~gi~~L~~~l~~~~~~p  201 (410)
T 1kk1_A          155 --ALENYRQIKEFIEGTVAENAPIIPISALHGANIDVLVKAIEDFIPTP  201 (410)
T ss_dssp             --HHHHHHHHHHHHTTSTTTTCCEEECBTTTTBSHHHHHHHHHHHSCCC
T ss_pred             --HHHHHHHHHHHHHhcCcCCCeEEEeeCCCCCCHHHHHHHHHHhCCCC
Confidence              001233444554431  223899999999999999999999877654

>2c78_A Elongation factor TU-A; hydrolase, GTPase, translation elongation factor, protein synthesis, antibiotic, GTP-binding, nucleotide-binding; HET: GNP PUL; 1.4A {Thermus thermophilus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 2y0u_Z* 2y0w_Z* 2y0y_Z* 2y10_Z* 2y12_Z* 2y14_Z* 2y16_Z* 2y18_Z* 2wrn_Z* 2wrq_Z* 2c77_A* 1aip_A 1exm_A* 1ha3_A* 2xqd_Z* 3fic_Z* 4abr_Z* 1b23_P* 1ob5_A* 1ttt_A* ...

Probab=99.88  E-value=2.7e-22  Score=155.39  Aligned_cols=167  Identities=19%  Similarity=0.167  Sum_probs=114.1

Q ss_pred             CCceeEEEEEcCCCCCHHHHHHHHhhC--------CCCCC--CCC-----ceeeee-eEEEEECCeEEEEEEEeCCCccc
Q 036449            3 ASRFIKCVTVGDGAVGKTCLLISYTSN--------TFPTD--YVP-----TVFDNF-SANVVVNGSTVNLGLWDTAGQED   66 (197)
Q Consensus         3 ~~~~~~i~v~G~~~~GKstli~~~~~~--------~~~~~--~~~-----~~~~~~-~~~~~~~~~~~~~~i~D~~G~~~   66 (197)
                      ....++|+++|++++|||||+++|...        .+...  ...     +.+... .....++.....+.+|||||+++
T Consensus         8 ~~~~~~I~iiG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~~~iiDtpG~~~   87 (405)
T 2c78_A            8 TKPHVNVGTIGHVDHGKTTLTAALTYVAAAENPNVEVKDYGDIDKAPEERARGITINTAHVEYETAKRHYSHVDCPGHAD   87 (405)
T ss_dssp             -CCEEEEEEECSTTSSHHHHHHHHHHHHHHSCTTSCCCCHHHHSCSHHHHHHTCCCSCEEEEEECSSCEEEEEECCCSGG
T ss_pred             CCCeEEEEEEcCCCCCHHHHHHHHHhhhhhcCccccccchhhccCCHHHHHcCCCEEeeeeEeccCCeEEEEEECCChHH
Confidence            456799999999999999999999863        11110  000     001111 12223333335678999999999


Q ss_pred             cccccccCcCCCcEEEEEEeCCCchhHHHHHHHHHHHHhhhCCCCC-EEEEeeCCcccCCcccccCCCCCCcccHHHHHH
Q 036449           67 YNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVP-IILVGTKLDLRDDKQFFIDHPGAVPISTAQGEE  145 (197)
Q Consensus        67 ~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~~-~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~  145 (197)
                      |.......+..+|++|+|+|++++...+.  ..++..+...  ++| +++++||+|+.....       ......++...
T Consensus        88 f~~~~~~~~~~aD~~ilVvda~~g~~~qt--~~~l~~~~~~--~ip~iivviNK~Dl~~~~~-------~~~~~~~~~~~  156 (405)
T 2c78_A           88 YIKNMITGAAQMDGAILVVSAADGPMPQT--REHILLARQV--GVPYIVVFMNKVDMVDDPE-------LLDLVEMEVRD  156 (405)
T ss_dssp             GHHHHHHHHTTCSSEEEEEETTTCCCHHH--HHHHHHHHHT--TCCCEEEEEECGGGCCCHH-------HHHHHHHHHHH
T ss_pred             HHHHHHHHHHHCCEEEEEEECCCCCcHHH--HHHHHHHHHc--CCCEEEEEEECccccCcHH-------HHHHHHHHHHH
Confidence            98888888999999999999998765443  3455555544  688 899999999974221       00012235566


Q ss_pred             HHHHhCC----CceEEeccCCCCC------------------HHHHHHHHHHHHcCC
Q 036449          146 LRKLIGA----PAYIECSSKTQQN------------------VKAVFDAAIRVVLQP  180 (197)
Q Consensus       146 ~~~~~~~----~~~~~~sa~~~~~------------------i~~l~~~i~~~~~~~  180 (197)
                      +...++.    .+++++||++|.|                  +.++++.|.+.+...
T Consensus       157 ~l~~~~~~~~~~~~i~~SA~~g~~v~~~~~~~~~~~~~~~~~i~~Ll~~l~~~lp~p  213 (405)
T 2c78_A          157 LLNQYEFPGDEVPVIRGSALLALEQMHRNPKTRRGENEWVDKIWELLDAIDEYIPTP  213 (405)
T ss_dssp             HHHHTTSCTTTSCEEECCHHHHHHHHHHCTTCCTTSCHHHHHHHHHHHHHHHHSCCC
T ss_pred             HHHHhcccccCCCEEEccHHHhhhhhccccccccCCCcccccHHHHHHHHHhhcCCC
Confidence            7777663    4899999999987                  888888888876543

>4fid_A G protein alpha subunit; RAS-like domain, all-helical domain, GTP binding, nucleotide signaling protein, transducer, lipoprotein; HET: MLY MSE GDP; 2.62A {Entamoeba histolytica}

Probab=99.87  E-value=2.2e-22  Score=150.86  Aligned_cols=127  Identities=17%  Similarity=0.142  Sum_probs=94.1

Q ss_pred             EEEEEEEeCCCccccccccccCcCCCcEEEEEEeCC----------CchhHHHHHHHHHHHHhhhC-CCCCEEEEeeCCc
Q 036449           53 TVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLI----------SKASYENVSKKWIPELKHYA-PGVPIILVGTKLD  121 (197)
Q Consensus        53 ~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~----------~~~s~~~~~~~~~~~i~~~~-~~~~~ivv~nK~D  121 (197)
                      .+.+++||++||+.+++.|..++++++++|+|||++          +..++.+....|...+.... +++|+++++||+|
T Consensus       160 ~v~l~iwDtaGQe~~R~~w~~yy~~a~~iIfV~diS~ydq~l~e~~~~nr~~es~~~~~~i~~~~~~~~~piiLv~NK~D  239 (340)
T 4fid_A          160 DIPFHLIDVGGQRSERKXWVSFFSDVDCAIFVTSLAEYDMKLYEDGNTSRLTESIAVFKDIMTNEFLKGAVKLIFLNKMD  239 (340)
T ss_dssp             SCEEEEEECCSCHHHHHHHHTTSCSCSEEEEEEEGGGTTCBCC--CCSBHHHHHHHHHHHHHHCGGGTTSEEEEEEECHH
T ss_pred             eeeeccccCCCcccccccHHHHhccCCEEEEEEECCccccccccccccchHHHHHHHHHHHhhhhccCCCeEEEEEECch
Confidence            477899999999999999999999999999999998          77888888444444444433 6899999999999


Q ss_pred             ccCCcccc-----cCCCCCCcccHHHHHHHHHHhC--------------------------CCceEEeccCCCCCHHHHH
Q 036449          122 LRDDKQFF-----IDHPGAVPISTAQGEELRKLIG--------------------------APAYIECSSKTQQNVKAVF  170 (197)
Q Consensus       122 ~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~--------------------------~~~~~~~sa~~~~~i~~l~  170 (197)
                      +..++...     .........+.+++..+.....                          ...+++|||++..||+.+|
T Consensus       240 L~~eki~~~~l~~~fp~y~g~~~~e~a~~~i~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~iy~h~TsA~dt~nv~~vF  319 (340)
T 4fid_A          240 LFEEKLTKVPLNTIFPEYTGGDNAVMGAQYIQQLFTGKLQTEEMNISGADGTANIEGAVNEKVYTNPTNATDGSNIKRVF  319 (340)
T ss_dssp             HHHHHHHHSCGGGTCTTCCCTTCHHHHHHHHHHHHHTTSEEEESCC--------------CEEEEEEECTTCHHHHHHHH
T ss_pred             hhhhhcCcchHHHhhhhhcCCCCHHHHHHHHHHhcccccchhhhhccccccccccccccCcceEEEEEEeeCcHHHHHHH
Confidence            97543211     0011111124566655543321                          2267899999999999999


Q ss_pred             HHHHHHHcC
Q 036449          171 DAAIRVVLQ  179 (197)
Q Consensus       171 ~~i~~~~~~  179 (197)
                      +.+...+..
T Consensus       320 ~~v~~~Il~  328 (340)
T 4fid_A          320 MLAVDVIMK  328 (340)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            999998876

>1jny_A EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF-1; GTPase, alpha/beta structure, protein biosynthesis, translation; HET: GDP; 1.80A {Sulfolobus solfataricus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1skq_A* 3agj_A*

Probab=99.87  E-value=2.7e-22  Score=156.61  Aligned_cols=162  Identities=16%  Similarity=0.163  Sum_probs=104.3

Q ss_pred             CCCCceeEEEEEcCCCCCHHHHHHHHhhC--CCCCCC------------------------------CCceeeeeeEEEE
Q 036449            1 MSASRFIKCVTVGDGAVGKTCLLISYTSN--TFPTDY------------------------------VPTVFDNFSANVV   48 (197)
Q Consensus         1 m~~~~~~~i~v~G~~~~GKstli~~~~~~--~~~~~~------------------------------~~~~~~~~~~~~~   48 (197)
                      |++.+.++|+++|+.++|||||+++|+..  .+....                              ...+.+.....  
T Consensus         1 ~~~k~~~~I~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~E~~~giTi~~~~~~--   78 (435)
T 1jny_A            1 MSQKPHLNLIVIGHVDHGKSTLVGRLLMDRGFIDEKTVKEAEEAAKKLGKESEKFAFLLDRLKEERERGVTINLTFMR--   78 (435)
T ss_dssp             ---CCEEEEEEEESTTSSHHHHHHHHHHHHBCCCHHHHHHHHHHHHHHTCTHHHHHHHHHHHHHC-----------CE--
T ss_pred             CCCCCEEEEEEEeCCCCCHHHHHHHHHHHcCCcCHHHHhhhhhhhhhcCCcchhhhhhhccChHHHhcCceeEeeEEE--
Confidence            66778899999999999999999999864  332110                              00110011111  


Q ss_pred             ECCeEEEEEEEeCCCccccccccccCcCCCcEEEEEEeCCCchhHHHHH------HHHHHHHhhhCCCC-CEEEEeeCCc
Q 036449           49 VNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVS------KKWIPELKHYAPGV-PIILVGTKLD  121 (197)
Q Consensus        49 ~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~------~~~~~~i~~~~~~~-~~ivv~nK~D  121 (197)
                      ++.....+.+|||||+++|...+..++..+|++|+|+|+++ .+|+...      ..........  +. ++++++||+|
T Consensus        79 ~~~~~~~~~iiDtpG~~~f~~~~~~~~~~aD~~ilVvDa~~-gsfe~~~~~~~qt~~~~~~~~~~--~~~~iivviNK~D  155 (435)
T 1jny_A           79 FETKKYFFTIIDAPGHRDFVKNMITGASQADAAILVVSAKK-GEYEAGMSVEGQTREHIILAKTM--GLDQLIVAVNKMD  155 (435)
T ss_dssp             EECSSCEEEECCCSSSTTHHHHHHHTSSCCSEEEEEEECST-THHHHHHSTTCHHHHHHHHHHHT--TCTTCEEEEECGG
T ss_pred             EecCCeEEEEEECCCcHHHHHHHHhhhhhcCEEEEEEECCC-CccccccccchHHHHHHHHHHHc--CCCeEEEEEEccc
Confidence            22233668899999999999888889999999999999998 5565431      1222222222  44 6899999999


Q ss_pred             ccCCcccccCCCCCCcccHHHHHHHHHHhCC----CceEEeccCCCCCHHHHHH
Q 036449          122 LRDDKQFFIDHPGAVPISTAQGEELRKLIGA----PAYIECSSKTQQNVKAVFD  171 (197)
Q Consensus       122 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~sa~~~~~i~~l~~  171 (197)
                      +.+....    ........++.+.++...+.    .+++++||++|.|+.+++.
T Consensus       156 l~~~~~~----~~~~~~~~~~i~~~~~~~~~~~~~~~~i~iSA~~g~~v~e~~~  205 (435)
T 1jny_A          156 LTEPPYD----EKRYKEIVDQVSKFMRSYGFNTNKVRFVPVVAPSGDNITHKSE  205 (435)
T ss_dssp             GSSSTTC----HHHHHHHHHHHHHHHHHTTCCCTTCEEEECBTTTTBTTTBCCS
T ss_pred             CCCcccc----HHHHHHHHHHHHHHHHHcCCCcCCceEEEeecccCcccccccc
Confidence            9762100    00001224556777777763    3799999999999986543

>3j2k_7 ERF3, eukaryotic polypeptide chain release factor 3; rabbit 80S ribosome, ribosome-translation complex; 17.00A {Oryctolagus cuniculus}

Probab=99.87  E-value=2.4e-21  Score=151.28  Aligned_cols=159  Identities=17%  Similarity=0.128  Sum_probs=102.2

Q ss_pred             CceeEEEEEcCCCCCHHHHHHHHhhCC--CCCCC------------------------------CCceeeeeeEEEEECC
Q 036449            4 SRFIKCVTVGDGAVGKTCLLISYTSNT--FPTDY------------------------------VPTVFDNFSANVVVNG   51 (197)
Q Consensus         4 ~~~~~i~v~G~~~~GKstli~~~~~~~--~~~~~------------------------------~~~~~~~~~~~~~~~~   51 (197)
                      ...++|+++|++++|||||+++|+...  +....                              ...+.+.....+..+ 
T Consensus        15 k~~~~i~iiG~~d~GKSTL~~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~a~~~d~~~~er~~GiTid~~~~~~~~~-   93 (439)
T 3j2k_7           15 KEHVNVVFIGHVDAGKSTIGGQIMYLTGMVDKRTLEKYEREAKEKNRETWYLSWALDTNQEERDKGKTVEVGRAYFETE-   93 (439)
T ss_pred             CceeEEEEEeCCCCCHHHHHHHHHHHcCCCchHHHHHHHHHHHhccccchhhhhhhccchhHhhcCceEEEeEEEEecC-
Confidence            467999999999999999999996431  11100                              011111111222233 


Q ss_pred             eEEEEEEEeCCCccccccccccCcCCCcEEEEEEeCCCchh---HH---HHHHHHHHHHhhhCCCCC-EEEEeeCCcccC
Q 036449           52 STVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKAS---YE---NVSKKWIPELKHYAPGVP-IILVGTKLDLRD  124 (197)
Q Consensus        52 ~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s---~~---~~~~~~~~~i~~~~~~~~-~ivv~nK~D~~~  124 (197)
                       ...+.+|||||+++|.......+..+|++|+|+|++++..   ++   .. ...+..+...  +.| +++|+||+|+..
T Consensus        94 -~~~~~iiDTPGh~~f~~~~~~~~~~aD~~ilVVDa~~g~~e~~~~~~~qt-~e~l~~~~~~--~v~~iIvviNK~Dl~~  169 (439)
T 3j2k_7           94 -KKHFTILDAPGHKSFVPNMIGGASQADLAVLVISARKGEFETGFEKGGQT-REHAMLAKTA--GVKHLIVLINKMDDPT  169 (439)
T ss_pred             -CeEEEEEECCChHHHHHHHHhhHhhCCEEEEEEECCCCccccccCCCchH-HHHHHHHHHc--CCCeEEEEeecCCCcc
Confidence             3578899999999999988889999999999999998642   11   11 1222222222  567 999999999953


Q ss_pred             CcccccCCCCCCcccHHHHHHHHHHhCC-----CceEEeccCCCCCHHHHHH
Q 036449          125 DKQFFIDHPGAVPISTAQGEELRKLIGA-----PAYIECSSKTQQNVKAVFD  171 (197)
Q Consensus       125 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~sa~~~~~i~~l~~  171 (197)
                      ....    ........++...+....+.     .+++++||++|.|++++++
T Consensus       170 ~~~~----~~~~~~i~~~~~~~l~~~g~~~~~~~~~i~iSA~~G~ni~~l~~  217 (439)
T 3j2k_7          170 VNWS----NERYEECKEKLVPFLKKVGFNPKKDIHFMPCSGLTGANLKEQSD  217 (439)
T ss_pred             cchH----HHHHHHHHHHHHHHHHHhcccccCCeeEEEeeccCCcccccccc
Confidence            2100    00011223344555555553     3699999999999999655

>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A

Probab=99.87  E-value=6.1e-21  Score=145.34  Aligned_cols=161  Identities=21%  Similarity=0.160  Sum_probs=108.0

Q ss_pred             eE-EEEEcCCCCCHHHHHHHHhhCCCC-CCCCCceeeeeeEEEEECCeEEEEEEEeCCCccc---------cccccccCc
Q 036449            7 IK-CVTVGDGAVGKTCLLISYTSNTFP-TDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQED---------YNRLRPLSY   75 (197)
Q Consensus         7 ~~-i~v~G~~~~GKstli~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~---------~~~~~~~~~   75 (197)
                      ++ |+++|.+|+|||||++++.+..+. .++..++.+.....+.+++  ..+.+|||+|.-.         |.+.+. .+
T Consensus       179 ~~~V~lvG~~naGKSTLln~L~~~~~~~~~~~~~T~d~~~~~i~~~g--~~v~l~DT~G~i~~lp~~lve~f~~tl~-~~  255 (364)
T 2qtf_A          179 IPSIGIVGYTNSGKTSLFNSLTGLTQKVDTKLFTTMSPKRYAIPINN--RKIMLVDTVGFIRGIPPQIVDAFFVTLS-EA  255 (364)
T ss_dssp             CCEEEEECBTTSSHHHHHHHHHCC-----------CCSCEEEEEETT--EEEEEEECCCBCSSCCGGGHHHHHHHHH-GG
T ss_pred             CcEEEEECCCCCCHHHHHHHHHCCCccccCCcccccCCEEEEEEECC--EEEEEEeCCCchhcCCHHHHHHHHHHHH-HH
Confidence            44 999999999999999999987653 2333444445556677777  4567999999621         222222 46


Q ss_pred             CCCcEEEEEEeCCCch--hHHHHHHHHHHHHhhhC-CCCCEEEEeeCCcccCCcccccCCCCCCcccHHHHHHHHHHh-C
Q 036449           76 RGADVFILAFSLISKA--SYENVSKKWIPELKHYA-PGVPIILVGTKLDLRDDKQFFIDHPGAVPISTAQGEELRKLI-G  151 (197)
Q Consensus        76 ~~~~~~i~v~d~~~~~--s~~~~~~~~~~~i~~~~-~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~  151 (197)
                      ..+|++++|+|++++.  ..+.. ..|...+.... .+.|+++|+||+|+.+...         ......+..++..+ .
T Consensus       256 ~~aD~il~VvD~s~~~~~~~~~~-~~~~~~L~~l~~~~~p~ilV~NK~Dl~~~~~---------~~~~~~~~~l~~~l~~  325 (364)
T 2qtf_A          256 KYSDALILVIDSTFSENLLIETL-QSSFEILREIGVSGKPILVTLNKIDKINGDL---------YKKLDLVEKLSKELYS  325 (364)
T ss_dssp             GGSSEEEEEEETTSCHHHHHHHH-HHHHHHHHHHTCCSCCEEEEEECGGGCCSCH---------HHHHHHHHHHHHHHCS
T ss_pred             HhCCEEEEEEECCCCcchHHHHH-HHHHHHHHHhCcCCCCEEEEEECCCCCCchH---------HHHHHHHHHHHHHhcC
Confidence            7899999999999886  44444 45566665543 5789999999999965321         01112333444554 2


Q ss_pred             -CCceEEeccCCCCCHHHHHHHHHHHHcCC
Q 036449          152 -APAYIECSSKTQQNVKAVFDAAIRVVLQP  180 (197)
Q Consensus       152 -~~~~~~~sa~~~~~i~~l~~~i~~~~~~~  180 (197)
                       ..+++++||+++.|++++++.|.+.+...
T Consensus       326 ~~~~~~~~SA~~g~gi~~L~~~I~~~l~~~  355 (364)
T 2qtf_A          326 PIFDVIPISALKRTNLELLRDKIYQLATQL  355 (364)
T ss_dssp             CEEEEEECBTTTTBSHHHHHHHHHHHHHHH
T ss_pred             CCCcEEEEECCCCcCHHHHHHHHHHHhccc
Confidence             22689999999999999999999876543

>1d2e_A Elongation factor TU (EF-TU); G-protein, beta-barrel, RNA binding protein; HET: GDP; 1.94A {Bos taurus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1xb2_A* 2hcj_A* 2hdn_A*

Probab=99.87  E-value=1.5e-21  Score=150.78  Aligned_cols=165  Identities=19%  Similarity=0.150  Sum_probs=111.9

Q ss_pred             ceeEEEEEcCCCCCHHHHHHHHhhCC-------CCCC--CCC-----ceeeee-eEEEEECCeEEEEEEEeCCCcccccc
Q 036449            5 RFIKCVTVGDGAVGKTCLLISYTSNT-------FPTD--YVP-----TVFDNF-SANVVVNGSTVNLGLWDTAGQEDYNR   69 (197)
Q Consensus         5 ~~~~i~v~G~~~~GKstli~~~~~~~-------~~~~--~~~-----~~~~~~-~~~~~~~~~~~~~~i~D~~G~~~~~~   69 (197)
                      +.++|+++|+.++|||||+++|....       +...  ...     ..+... .....+......+.+|||||+++|..
T Consensus         2 ~~~~I~iiG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~~~iiDtpG~~~f~~   81 (397)
T 1d2e_A            2 PHVNVGTIGHVDHGKTTLTAAITKILAEGGGAKFKKYEEIDNAPEERARGITINAAHVEYSTAARHYAHTDCPGHADYVK   81 (397)
T ss_dssp             CEEEEEEESSTTSSHHHHHHHHHHHHHHTTSBCCCCHHHHHSCCEEEETTEEEECEEEEEECSSCEEEEEECSSHHHHHH
T ss_pred             CeEEEEEEeCCCCCHHHHHHHHhChhhhcCccccchhhhhhcCHHHHhcCcEEEeeeEEeccCCeEEEEEECCChHHHHH
Confidence            56899999999999999999998631       1100  000     000000 11122333335688999999999988


Q ss_pred             ccccCcCCCcEEEEEEeCCCchhHHHHHHHHHHHHhhhCCCCC-EEEEeeCCcccCCcccccCCCCCCcccHHHHHHHHH
Q 036449           70 LRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVP-IILVGTKLDLRDDKQFFIDHPGAVPISTAQGEELRK  148 (197)
Q Consensus        70 ~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~~-~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~  148 (197)
                      .....+..+|++|+|+|++++...+..  .++..+...  ++| +++++||+|+.....       ......++.+++++
T Consensus        82 ~~~~~~~~aD~~ilVvda~~g~~~qt~--e~l~~~~~~--~vp~iivviNK~Dl~~~~~-------~~~~~~~~~~~~l~  150 (397)
T 1d2e_A           82 NMITGTAPLDGCILVVAANDGPMPQTR--EHLLLARQI--GVEHVVVYVNKADAVQDSE-------MVELVELEIRELLT  150 (397)
T ss_dssp             HHHHTSSCCSEEEEEEETTTCSCHHHH--HHHHHHHHT--TCCCEEEEEECGGGCSCHH-------HHHHHHHHHHHHHH
T ss_pred             HHHhhHhhCCEEEEEEECCCCCCHHHH--HHHHHHHHc--CCCeEEEEEECcccCCCHH-------HHHHHHHHHHHHHH
Confidence            888889999999999999987655443  233444443  688 789999999974211       00012345667777


Q ss_pred             HhCC----CceEEeccCCCCC----------HHHHHHHHHHHHcCC
Q 036449          149 LIGA----PAYIECSSKTQQN----------VKAVFDAAIRVVLQP  180 (197)
Q Consensus       149 ~~~~----~~~~~~sa~~~~~----------i~~l~~~i~~~~~~~  180 (197)
                      .++.    .+++++||++|.|          +.++++.|.+.+..+
T Consensus       151 ~~~~~~~~~~~i~~SA~~g~n~~~~~~~~g~i~~Ll~~l~~~~p~p  196 (397)
T 1d2e_A          151 EFGYKGEETPIIVGSALCALEQRDPELGLKSVQKLLDAVDTYIPVP  196 (397)
T ss_dssp             HTTSCTTTSCEEECCHHHHHTTCCTTTTHHHHHHHHHHHHHHSCCC
T ss_pred             HcCCCcccCcEEEeehhhcccccCCCccCCcHHHHHHHHHHhCCCC
Confidence            7763    3899999999764          899999998877643

>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}

Probab=99.87  E-value=3e-22  Score=140.15  Aligned_cols=114  Identities=15%  Similarity=0.169  Sum_probs=84.0

Q ss_pred             CceeEEEEEcCCCCCHHHHHHHHhhCCCCC---CCCCceeeeeeEEEEECCeEEEEEEEeCCCccccccccccCcCC---
Q 036449            4 SRFIKCVTVGDGAVGKTCLLISYTSNTFPT---DYVPTVFDNFSANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRG---   77 (197)
Q Consensus         4 ~~~~~i~v~G~~~~GKstli~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~---   77 (197)
                      .+.++|+++|.+|||||||++++.+..+..   .+.++...        +...+.+.+||+||++.+...+..++..   
T Consensus        46 ~~~~~i~vvG~~g~GKSsll~~l~~~~~~~~~~~~~~~~~~--------~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~  117 (193)
T 2ged_A           46 SYQPSIIIAGPQNSGKTSLLTLLTTDSVRPTVVSQEPLSAA--------DYDGSGVTLVDFPGHVKLRYKLSDYLKTRAK  117 (193)
T ss_dssp             CCCCEEEEECCTTSSHHHHHHHHHHSSCC--------------------CCCCTTCSEEEETTCCBSSCCHHHHHHHHGG
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhcCCCCcccccCCCceee--------eecCCeEEEEECCCCchHHHHHHHHHHhhcc
Confidence            466899999999999999999999887643   12222211        1123567899999999988777777665   


Q ss_pred             -CcEEEEEEeCC-CchhHHHHHHHHHHHHhhh-----CCCCCEEEEeeCCcccCCc
Q 036449           78 -ADVFILAFSLI-SKASYENVSKKWIPELKHY-----APGVPIILVGTKLDLRDDK  126 (197)
Q Consensus        78 -~~~~i~v~d~~-~~~s~~~~~~~~~~~i~~~-----~~~~~~ivv~nK~D~~~~~  126 (197)
                       +|++|+|||++ +..++..+ ..|+..+...     .++.|+++|+||+|+.+..
T Consensus       118 ~~~~~i~v~d~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~  172 (193)
T 2ged_A          118 FVKGLIFMVDSTVDPKKLTTT-AEFLVDILSITESSCENGIDILIACNKSELFTAR  172 (193)
T ss_dssp             GEEEEEEEEETTCCHHHHHHH-HHHHHHHHHHHHHHSTTCCCEEEEEECTTSTTCC
T ss_pred             cCCEEEEEEECCCCchhHHHH-HHHHHHHHhhhhhccccCCCEEEEEEchHhcCCC
Confidence             89999999999 88898887 4554444322     2589999999999997654

>1g7s_A Translation initiation factor IF2/EIF5B; translational GTPase; HET: GDP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: b.43.3.1 b.43.3.1 c.20.1.1 c.37.1.8 PDB: 1g7r_A* 1g7t_A*

Probab=99.87  E-value=4.1e-21  Score=154.23  Aligned_cols=168  Identities=17%  Similarity=0.148  Sum_probs=106.6

Q ss_pred             CceeEEEEEcCCCCCHHHHHHHHhhCCCCCCC----CCceeeeeeEEE-------------EECCeEEEEEEEeCCCccc
Q 036449            4 SRFIKCVTVGDGAVGKTCLLISYTSNTFPTDY----VPTVFDNFSANV-------------VVNGSTVNLGLWDTAGQED   66 (197)
Q Consensus         4 ~~~~~i~v~G~~~~GKstli~~~~~~~~~~~~----~~~~~~~~~~~~-------------~~~~~~~~~~i~D~~G~~~   66 (197)
                      .+.++|+++|++++|||||++++.+..+....    ..+.+..+....             .++.....+++|||||++.
T Consensus         3 ~r~~~V~IvGh~d~GKTTLl~~L~~~~v~~~e~ggiT~~ig~~~~~~~~~~~~~~~~~~~~~v~~~~~~i~liDTPGhe~   82 (594)
T 1g7s_A            3 IRSPIVSVLGHVDHGKTTLLDHIRGSAVASREAGGITQHIGATEIPMDVIEGICGDFLKKFSIRETLPGLFFIDTPGHEA   82 (594)
T ss_dssp             ECCCEEEEECSTTSSHHHHHHHHHHHHHSCC----CCCBTTEEEEEHHHHHHHSCGGGGGCGGGGTCCEEEEECCCTTSC
T ss_pred             CCCcEEEEECCCCCcHHHHHHHHhcccCccccCCceecccCeEEEeechhhhhccccccccccccccCCEEEEECCCcHH
Confidence            46789999999999999999999876543321    122221111100             0000112488999999999


Q ss_pred             cccccccCcCCCcEEEEEEeCCC---chhHHHHHHHHHHHHhhhCCCCCEEEEeeCCcccCCcccccC-----C--CCCC
Q 036449           67 YNRLRPLSYRGADVFILAFSLIS---KASYENVSKKWIPELKHYAPGVPIILVGTKLDLRDDKQFFID-----H--PGAV  136 (197)
Q Consensus        67 ~~~~~~~~~~~~~~~i~v~d~~~---~~s~~~~~~~~~~~i~~~~~~~~~ivv~nK~D~~~~~~~~~~-----~--~~~~  136 (197)
                      |..++...+..+|++|+|+|+++   +++++.+     ..+...  +.|+++++||+|+.+.......     .  ....
T Consensus        83 F~~~~~r~~~~aD~aILVvDa~~Gv~~qT~e~l-----~~l~~~--~vPiIVViNKiDl~~~~~~~~~~~~~e~sa~~~~  155 (594)
T 1g7s_A           83 FTTLRKRGGALADLAILIVDINEGFKPQTQEAL-----NILRMY--RTPFVVAANKIDRIHGWRVHEGRPFMETFSKQDI  155 (594)
T ss_dssp             CTTSBCSSSBSCSEEEEEEETTTCCCHHHHHHH-----HHHHHT--TCCEEEEEECGGGSTTCCCCTTCCHHHHHTTSCH
T ss_pred             HHHHHHHHHhhCCEEEEEEECCCCccHhHHHHH-----HHHHHc--CCeEEEEecccccccccccccCCchHHHHHHhHH
Confidence            99999999999999999999999   4554433     223333  7999999999999653210000     0  0000


Q ss_pred             cccH---H---HHHHHHHHhC--------------CCceEEeccCCCCCHHHHHHHHHHHHc
Q 036449          137 PIST---A---QGEELRKLIG--------------APAYIECSSKTQQNVKAVFDAAIRVVL  178 (197)
Q Consensus       137 ~~~~---~---~~~~~~~~~~--------------~~~~~~~sa~~~~~i~~l~~~i~~~~~  178 (197)
                      .+..   +   +........+              ..+++++||++|.|+++++++|...+.
T Consensus       156 ~v~~~~~e~i~ei~~~L~e~gl~~e~~~~l~~~~~~vpvv~vSA~tG~GI~eLl~~I~~~~~  217 (594)
T 1g7s_A          156 QVQQKLDTKVYELVGKLHEEGFESERFDRVTDFASQVSIIPISAITGEGIPELLTMLMGLAQ  217 (594)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTTCEEEEGGGCSCTTTEEEEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHcCcchHHHHHHHhccCcceEEEEeccCCCCchhHHHHHHhhcc
Confidence            0000   0   0111111111              227899999999999999999998765

>1zo1_I IF2, translation initiation factor 2; E. coli, ribosome, initiation of protein synthesis, cryo-eletron microscopy, translation/RNA complex; 13.80A {Escherichia coli}

Probab=99.86  E-value=2.2e-23  Score=163.76  Aligned_cols=161  Identities=18%  Similarity=0.242  Sum_probs=105.8

Q ss_pred             CceeEEEEEcCCCCCHHHHHHHHhhCCCCCCCCCceeeee-eEEEEECCeEEEEEEEeCCCccccccccccCcCCCcEEE
Q 036449            4 SRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNF-SANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFI   82 (197)
Q Consensus         4 ~~~~~i~v~G~~~~GKstli~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i   82 (197)
                      ++..+|+++|+.++|||||++++....+.....+...... ...+.+++  ..+.+|||||++.|..++...+..+|++|
T Consensus         2 ~R~~~V~IvGhvd~GKTTLl~~L~~~~v~~~e~~GIT~~i~~~~v~~~~--~~i~~iDTPGhe~f~~~~~~~~~~aD~aI   79 (501)
T 1zo1_I            2 PRAPVVTIMGHVDHGKTSLLEYIRSTKVASGEAGGITQHIGAYHVETEN--GMITFLDTPGHAAFTSMRARGAQATDIVV   79 (501)
T ss_dssp             CCCCCEEEEESTTSSSHHHHHHHHHHHHSBTTBCCCCCCSSCCCCCTTS--SCCCEECCCTTTCCTTSBCSSSBSCSSEE
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHcCCCccccCCCeeEeEEEEEEEECC--EEEEEEECCCcHHHHHHHHHHHhhCCEEE
Confidence            5678999999999999999999987554433222221111 11122233  35779999999999999999999999999


Q ss_pred             EEEeCCCchhHHHHHHHHHHHHhhhCCCCCEEEEeeCCcccCCcccccCCCCCCcccHHHHHHHHHHhC-CCceEEeccC
Q 036449           83 LAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPISTAQGEELRKLIG-APAYIECSSK  161 (197)
Q Consensus        83 ~v~d~~~~~s~~~~~~~~~~~i~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~sa~  161 (197)
                      +|+|++++...+..  ..+..+...  +.|+++++||+|+...+.......    ..  +...++..++ ..+++++||+
T Consensus        80 LVVda~~g~~~qT~--e~l~~~~~~--~vPiIVviNKiDl~~~~~~~v~~~----l~--~~~~~~~~~~~~~~~v~vSAk  149 (501)
T 1zo1_I           80 LVVAADDGVMPQTI--EAIQHAKAA--QVPVVVAVNKIDKPEADPDRVKNE----LS--QYGILPEEWGGESQFVHVSAK  149 (501)
T ss_dssp             EEEETTTBSCTTTH--HHHHHHHHT--TCCEEEEEECSSSSTTCCCCTTCC----CC--CCCCCTTCCSSSCEEEECCTT
T ss_pred             EEeecccCccHHHH--HHHHHHHhc--CceEEEEEEeccccccCHHHHHHH----HH--HhhhhHHHhCCCccEEEEeee
Confidence            99999985332222  112223333  789999999999975321000000    00  0000111222 2389999999


Q ss_pred             CCCCHHHHHHHHHHH
Q 036449          162 TQQNVKAVFDAAIRV  176 (197)
Q Consensus       162 ~~~~i~~l~~~i~~~  176 (197)
                      +|.|++++|++|...
T Consensus       150 tG~gI~eLle~I~~~  164 (501)
T 1zo1_I          150 AGTGIDELLDAILLQ  164 (501)
T ss_dssp             TCTTCTTHHHHTTTT
T ss_pred             eccCcchhhhhhhhh
Confidence            999999999998764

>1azs_C GS-alpha; complex (lyase/hydrolase), hydrolase, signal transducing protein, cyclase, effector enzyme; HET: GSP FKP; 2.30A {Bos taurus} SCOP: a.66.1.1 c.37.1.8 PDB: 1azt_A* 3c14_C* 3c15_C* 3c16_C* 1cjt_C* 1cjk_C* 1cju_C* 1cjv_C* 1tl7_C* 1cs4_C* 1u0h_C* 2gvd_C* 2gvz_C* 3e8a_C* 3g82_C* 3maa_C* 1cul_C* 3sn6_A*

Probab=99.86  E-value=8.8e-21  Score=145.23  Aligned_cols=126  Identities=14%  Similarity=0.154  Sum_probs=93.0

Q ss_pred             EEEEEEeCCCccccccccccCcCCCcEEEEEEeCCC----------chhHHHHHHHHHHHHhhh--CCCCCEEEEeeCCc
Q 036449           54 VNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLIS----------KASYENVSKKWIPELKHY--APGVPIILVGTKLD  121 (197)
Q Consensus        54 ~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~----------~~s~~~~~~~~~~~i~~~--~~~~~~ivv~nK~D  121 (197)
                      +.+++||++|++.+++.|..++++++++|+|||+++          ..+++.+ ..|+..+...  .+++|++||+||+|
T Consensus       217 v~l~iwDtaGQe~~r~~w~~yf~~a~~iIfV~dis~ydq~l~ed~~~ns~~e~-~~~~~~i~~~~~~~~~piiLvgNK~D  295 (402)
T 1azs_C          217 VNFHMFDVGGQRDERRKWIQCFNDVTAIIFVVASSSYNMVIREDNQTNRLQEA-LNLFKSIWNNRWLRTISVILFLNKQD  295 (402)
T ss_dssp             EEEEEEEECCSGGGGGGGGGGTTTCCEEEEEEETTGGGCBCTTTSCSBHHHHH-HHHHHHHHTCTTCSSCCEEEEEECHH
T ss_pred             ccceecccchhhhhhhhhHhhccCCCEEEEEEECcccccccccccccchHHHH-HHHHHHHHhcccCCCCeEEEEEEChh
Confidence            789999999999999999999999999999999999          8899998 6676666543  37899999999999


Q ss_pred             ccCCcc---cc------cCCC----------CCCc-ccHHHHHHHH-----HHh-------CCCceEEeccCCCCCHHHH
Q 036449          122 LRDDKQ---FF------IDHP----------GAVP-ISTAQGEELR-----KLI-------GAPAYIECSSKTQQNVKAV  169 (197)
Q Consensus       122 ~~~~~~---~~------~~~~----------~~~~-~~~~~~~~~~-----~~~-------~~~~~~~~sa~~~~~i~~l  169 (197)
                      +...+.   +.      .+..          ..-. .+.+++..|+     +..       ....+++|||+++.||+++
T Consensus       296 L~~~ki~~~~~~l~~~fp~y~~~~~~~~~~~~~g~~~~~~~a~~fi~~kF~~~~~~~~~~~~~~~~~~TSA~d~~nV~~v  375 (402)
T 1azs_C          296 LLAEKVLAGKSKIEDYFPEFARYTTPEDATPEPGEDPRVTRAKYFIRDEFLRISTASGDGRHYCYPHFTCAVDTENIRRV  375 (402)
T ss_dssp             HHHHHHHHCSSCGGGTCGGGGTCCCCSSCCCCTTCCHHHHHHHHHHHHHHHHHHHTSCTTSSCEEEEECCTTCHHHHHHH
T ss_pred             hhhhhhcccccchhhccccccccccccccccccCCcccHHHHHHHHHHHHHHhhccccccCcccEEEEEEeecCcCHHHH
Confidence            965432   10      0000          0000 1235555553     221       1225679999999999999


Q ss_pred             HHHHHHHHcCC
Q 036449          170 FDAAIRVVLQP  180 (197)
Q Consensus       170 ~~~i~~~~~~~  180 (197)
                      |..+...+...
T Consensus       376 F~~v~~~I~~~  386 (402)
T 1azs_C          376 FNDCRDIIQRM  386 (402)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHH
Confidence            99998877643

>3p26_A Elongation factor 1 alpha-like protein; GTP/GDP binding domain, beta-barrel, translational GTPase, D structural genomics; 2.50A {Saccharomyces cerevisiae} PDB: 3p27_A*

Probab=99.86  E-value=8.9e-22  Score=155.56  Aligned_cols=156  Identities=15%  Similarity=0.076  Sum_probs=97.2

Q ss_pred             CceeEEEEEcCCCCCHHHHHHHHhhCCC--CCC------------------------------CCCceeeeeeEEEEECC
Q 036449            4 SRFIKCVTVGDGAVGKTCLLISYTSNTF--PTD------------------------------YVPTVFDNFSANVVVNG   51 (197)
Q Consensus         4 ~~~~~i~v~G~~~~GKstli~~~~~~~~--~~~------------------------------~~~~~~~~~~~~~~~~~   51 (197)
                      ...+||+++|.+++|||||+++|+....  ...                              ....+.+.  ....++.
T Consensus        31 k~~~ki~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~GiTi~~--~~~~~~~  108 (483)
T 3p26_A           31 LPHLSFVVLGHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEERERGVTVSI--CTSHFST  108 (483)
T ss_dssp             CCEEEEEEESCGGGTHHHHHHHHHHHTTSSCHHHHHHHCC------------------------CCSSCCC--CEEEEEC
T ss_pred             CCceEEEEECCCCCCHHHHHHHHHHhcCCccHHHHHHHHHHHHhcCCCcchhhhhhccchhHhhcCcceEe--eeEEEec
Confidence            4569999999999999999999975411  100                              00111111  1122233


Q ss_pred             eEEEEEEEeCCCccccccccccCcCCCcEEEEEEeCCCchhHHH-----HHHHHHHHHhhhCCCCCEEEEeeCCcccCCc
Q 036449           52 STVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYEN-----VSKKWIPELKHYAPGVPIILVGTKLDLRDDK  126 (197)
Q Consensus        52 ~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~-----~~~~~~~~i~~~~~~~~~ivv~nK~D~~~~~  126 (197)
                      ..+.+.+|||||+++|......++..+|++|+|+|++++.+...     ............ ...|+++|+||+|+.+.+
T Consensus       109 ~~~~~~iiDTPG~~~f~~~~~~~~~~aD~~llVvDa~~g~~~~~~~~~~qt~e~~~~~~~~-~~~~iIvviNK~Dl~~~~  187 (483)
T 3p26_A          109 HRANFTIVDAPGHRDFVPNAIMGISQADMAILCVDCSTNAFESGFDLDGQTKEHMLLASSL-GIHNLIIAMNKMDNVDWS  187 (483)
T ss_dssp             SSCEEEEECCCCCGGGHHHHHHHHTTCSEEEEEEECCC------CCCCHHHHHHHHHHHHT-TCCCEEEEEECGGGGTTC
T ss_pred             CCceEEEEECCCcHHHHHHHHHhhhhCCEEEEEEECCCCccccccchhhhHHHHHHHHHHc-CCCcEEEEEECcCcccch
Confidence            34678899999999999998889999999999999998754321     112222222222 235699999999997633


Q ss_pred             ccccCCCCCCcccHHHHHHHHHHhCC----CceEEeccCCCCCHHH
Q 036449          127 QFFIDHPGAVPISTAQGEELRKLIGA----PAYIECSSKTQQNVKA  168 (197)
Q Consensus       127 ~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~sa~~~~~i~~  168 (197)
                      ..      ......++...+....+.    .+++++||++|.|+++
T Consensus       188 ~~------~~~~i~~~~~~~l~~~g~~~~~~~~i~iSA~~g~gi~e  227 (483)
T 3p26_A          188 QQ------RFEEIKSKLLPYLVDIGFFEDNINWVPISGFSGEGVYK  227 (483)
T ss_dssp             HH------HHHHHHHHHHHHHHHHTCCGGGEEEEECCSSSCTTSSS
T ss_pred             HH------HHHHHHHHHHHHHHHcCCCcccceEEEEeeecCCCccc
Confidence            20      000112233444444443    2789999999999875

>3tr5_A RF-3, peptide chain release factor 3; protein synthesis, translation; HET: GDP; 2.11A {Coxiella burnetii}

Probab=99.86  E-value=3.5e-21  Score=152.91  Aligned_cols=116  Identities=13%  Similarity=0.087  Sum_probs=83.0

Q ss_pred             CceeEEEEEcCCCCCHHHHHHHHhhCCCCC-------------C----C------CCceeeeeeEEEEECCeEEEEEEEe
Q 036449            4 SRFIKCVTVGDGAVGKTCLLISYTSNTFPT-------------D----Y------VPTVFDNFSANVVVNGSTVNLGLWD   60 (197)
Q Consensus         4 ~~~~~i~v~G~~~~GKstli~~~~~~~~~~-------------~----~------~~~~~~~~~~~~~~~~~~~~~~i~D   60 (197)
                      .+..+|+++|++|+|||||+++|+......             .    +      ...+.......+.+.+  +.+++||
T Consensus        11 ~~~r~IaIiG~~~aGKTTL~~~Ll~~~g~i~~~g~v~~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~--~~i~liD   88 (528)
T 3tr5_A           11 AMRRTFAIISHPDAGKTTLTEKLLLFGGAIQLAGTIKSRKAARHATSDWMELEKQRGISVTTSVMQFPYKD--YLINLLD   88 (528)
T ss_dssp             HTEEEEEEEECTTSSHHHHHHHHHHHTTCHHHHHHHHTC----CCHHHHHHHHHHHCCSSSSSEEEEEETT--EEEEEEC
T ss_pred             hcCCEEEEECCCCCcHHHHHHHHHhhcCCcccceeeeccccccceecccchhhhcCCeeEEEeEEEEEeCC--EEEEEEE
Confidence            356899999999999999999996211100             0    0      0001111122333444  6788999


Q ss_pred             CCCccccccccccCcCCCcEEEEEEeCCCchhHHHHHHHHHHHHhhhCCCCCEEEEeeCCcccCC
Q 036449           61 TAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLRDD  125 (197)
Q Consensus        61 ~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~~~ivv~nK~D~~~~  125 (197)
                      |||+.+|......++..+|++|+|+|++++.+.+.. .. +..+...  ++|+++|+||+|+...
T Consensus        89 TPG~~df~~~~~~~l~~aD~allVvDa~~g~~~~t~-~~-~~~~~~~--~iPiivviNK~Dl~~~  149 (528)
T 3tr5_A           89 TPGHADFTEDTYRTLTAVDSALMVIDAAKGVEPRTI-KL-MEVCRLR--HTPIMTFINKMDRDTR  149 (528)
T ss_dssp             CCCSTTCCHHHHHGGGGCSEEEEEEETTTCSCHHHH-HH-HHHHHTT--TCCEEEEEECTTSCCS
T ss_pred             CCCchhHHHHHHHHHHhCCEEEEEEeCCCCCCHHHH-HH-HHHHHHc--CCCEEEEEeCCCCccc
Confidence            999999999888899999999999999998777665 33 3444444  7899999999999643

>1zun_B Sulfate adenylate transferase, subunit 1/adenylylsulfate kinase; beta barrel, switch domain, heterodimer, pyrophosphate, G protein; HET: GDP AGS; 2.70A {Pseudomonas syringae PV} SCOP: b.43.3.1 b.44.1.1 c.37.1.8

Probab=99.85  E-value=4e-21  Score=150.02  Aligned_cols=156  Identities=18%  Similarity=0.160  Sum_probs=102.5

Q ss_pred             CceeEEEEEcCCCCCHHHHHHHHhhCC--CCCC----------CCCceeeee--------------------eEEEEECC
Q 036449            4 SRFIKCVTVGDGAVGKTCLLISYTSNT--FPTD----------YVPTVFDNF--------------------SANVVVNG   51 (197)
Q Consensus         4 ~~~~~i~v~G~~~~GKstli~~~~~~~--~~~~----------~~~~~~~~~--------------------~~~~~~~~   51 (197)
                      ...++|+++|+.++|||||+++|+...  +...          ..++++..+                    .....+..
T Consensus        22 ~~~~~i~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~i~~~s~~~gt~~~~~~~~~~~d~~~~E~~rGiTi~~~~~~~~~  101 (434)
T 1zun_B           22 KEMLRFLTCGNVDDGKSTLIGRLLHDSKMIYEDHLEAITRDSKKSGTTGDDVDLALLVDGLQAEREQGITIDVAYRYFST  101 (434)
T ss_dssp             CEEEEEEEECCTTSSHHHHHHHHHHHTTCC------------------CCC--CHHHHHHHHC-----CCCCCEEEEEEC
T ss_pred             CCceEEEEEECCCCCHHHHHHHHHhhcCCCchhhhhhhhhhhhccCccccchhhhhhhccChhHHHCCcEEEeeeeEeec
Confidence            456899999999999999999998653  1111          112211100                    00111222


Q ss_pred             eEEEEEEEeCCCccccccccccCcCCCcEEEEEEeCCCchhHHHHHHHHHHHHhhhCCCC-CEEEEeeCCcccCCccccc
Q 036449           52 STVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGV-PIILVGTKLDLRDDKQFFI  130 (197)
Q Consensus        52 ~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~-~~ivv~nK~D~~~~~~~~~  130 (197)
                      ....+.+|||||+++|......++..+|++|+|+|++++...+..  .++..+...  +. |+++|+||+|+.+....  
T Consensus       102 ~~~~~~iiDtpGh~~f~~~~~~~~~~aD~~ilVvDa~~g~~~qt~--~~l~~~~~~--~~~~iIvviNK~Dl~~~~~~--  175 (434)
T 1zun_B          102 AKRKFIIADTPGHEQYTRNMATGASTCDLAIILVDARYGVQTQTR--RHSYIASLL--GIKHIVVAINKMDLNGFDER--  175 (434)
T ss_dssp             SSEEEEEEECCCSGGGHHHHHHHHTTCSEEEEEEETTTCSCHHHH--HHHHHHHHT--TCCEEEEEEECTTTTTSCHH--
T ss_pred             CCceEEEEECCChHHHHHHHHHHHhhCCEEEEEEECCCCCcHHHH--HHHHHHHHc--CCCeEEEEEEcCcCCcccHH--
Confidence            336788999999999988888889999999999999987544432  344444333  44 59999999999753210  


Q ss_pred             CCCCCCcccHHHHHHHHHHhC--C--CceEEeccCCCCCHHHH
Q 036449          131 DHPGAVPISTAQGEELRKLIG--A--PAYIECSSKTQQNVKAV  169 (197)
Q Consensus       131 ~~~~~~~~~~~~~~~~~~~~~--~--~~~~~~sa~~~~~i~~l  169 (197)
                          ......++...+++.++  .  .+++++||++|.|++++
T Consensus       176 ----~~~~i~~~~~~~~~~~g~~~~~~~~i~vSA~~g~gi~~~  214 (434)
T 1zun_B          176 ----VFESIKADYLKFAEGIAFKPTTMAFVPMSALKGDNVVNK  214 (434)
T ss_dssp             ----HHHHHHHHHHHHHHTTTCCCSEEEEEECCTTTCTTTSSC
T ss_pred             ----HHHHHHHHHHHHHHHhCCCccCceEEEEeccCCCCcccc
Confidence                00012345566777776  1  27999999999999874

>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}

Probab=99.85  E-value=2e-22  Score=153.62  Aligned_cols=161  Identities=14%  Similarity=0.155  Sum_probs=86.1

Q ss_pred             ceeEEEEEcCCCCCHHHHHHHHhhCC-CCCCCC--------Cceeee-eeEEEEECCeEEEEEEEeCCCc-------ccc
Q 036449            5 RFIKCVTVGDGAVGKTCLLISYTSNT-FPTDYV--------PTVFDN-FSANVVVNGSTVNLGLWDTAGQ-------EDY   67 (197)
Q Consensus         5 ~~~~i~v~G~~~~GKstli~~~~~~~-~~~~~~--------~~~~~~-~~~~~~~~~~~~~~~i~D~~G~-------~~~   67 (197)
                      ..++|+++|++|+|||||+++++... +...+.        ++.... .......++..+.+++|||||+       +.+
T Consensus        36 ~~~~I~vvG~~g~GKSTLln~L~~~~~~~~~~~~~~~~~~~~ti~~~~~~~~~~~~~~~~~l~i~DTpG~gd~~~~~e~~  115 (361)
T 2qag_A           36 FEFTLMVVGESGLGKSTLINSLFLTDLYPERVIPGAAEKIERTVQIEASTVEIEERGVKLRLTVVDTPGYGDAINCRDCF  115 (361)
T ss_dssp             CEECEEECCCTTSCHHHHHHHHTTCCC---------------CEEEEEEEEC----CEEEEEEEEC--------------
T ss_pred             CCEEEEEEcCCCCCHHHHHHHHhCCCCCCCCcccCCCcccCCceeEEEEEEEeecCCcccceEEEEeccccccCccHHHH
Confidence            45899999999999999999976543 333222        232211 1222333566678999999998       556


Q ss_pred             ccccc-------cCcC-----------CCcEEEEEEeCCC-chhHHHHHHHHHHHHhhhCCCCCEEEEeeCCcccCCccc
Q 036449           68 NRLRP-------LSYR-----------GADVFILAFSLIS-KASYENVSKKWIPELKHYAPGVPIILVGTKLDLRDDKQF  128 (197)
Q Consensus        68 ~~~~~-------~~~~-----------~~~~~i~v~d~~~-~~s~~~~~~~~~~~i~~~~~~~~~ivv~nK~D~~~~~~~  128 (197)
                      ..++.       .++.           ..++.+++|++++ ..++......|+..+.   .+.|+++|+||+|+...+. 
T Consensus       116 ~~i~~~i~~~~~~yl~~~~~~~r~~~~d~rv~~~vy~I~~~~~~l~~~d~~~~~~l~---~~~piIlV~NK~Dl~~~~e-  191 (361)
T 2qag_A          116 KTIISYIDEQFERYLHDESGLNRRHIIDNRVHCCFYFISPFGHGLKPLDVAFMKAIH---NKVNIVPVIAKADTLTLKE-  191 (361)
T ss_dssp             CCTHHHHHHHHHHHHHHHTCSCCC-CCCCCCCEEEEEECSSSSSCCHHHHHHHHHTC---S-SCEEEEEECCSSSCHHH-
T ss_pred             HHHHHHHHHHHHHHHHHhhhhccccccCCceEEEEEEEecCCCCcchhHHHHHHHhc---cCCCEEEEEECCCCCCHHH-
Confidence            55543       3332           2222345555544 4455555334555442   5799999999999976443 


Q ss_pred             ccCCCCCCcccH--HHHHHHHHHhCCCceEEeccCCCCCHHHHHHHHHHHHcCC
Q 036449          129 FIDHPGAVPIST--AQGEELRKLIGAPAYIECSSKTQQNVKAVFDAAIRVVLQP  180 (197)
Q Consensus       129 ~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~sa~~~~~i~~l~~~i~~~~~~~  180 (197)
                               +..  +++..++...++ +++++||+++.+ ++.|..+.+.+...
T Consensus       192 ---------v~~~k~~i~~~~~~~~i-~~~~~Sa~~~~~-~e~~~~l~~~i~~~  234 (361)
T 2qag_A          192 ---------RERLKKRILDEIEEHNI-KIYHLPDAESDE-DEDFKEQTRLLKAS  234 (361)
T ss_dssp             ---------HHHHHHHHHHHTTCC-C-CSCCCC----------CHHHHHHHHHT
T ss_pred             ---------HHHHHHHHHHHHHHCCC-CEEeCCCcCCCc-chhHHHHHHHHHhc
Confidence                     222  466677777777 899999999998 88888887776543

>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*

Probab=99.85  E-value=8.7e-22  Score=145.15  Aligned_cols=160  Identities=14%  Similarity=0.112  Sum_probs=89.5

Q ss_pred             CceeEEEEEcCCCCCHHHHHHHHhhCCC-CCCC-------CCcee-eeeeEEEEECCeEEEEEEEeCCCcccc-------
Q 036449            4 SRFIKCVTVGDGAVGKTCLLISYTSNTF-PTDY-------VPTVF-DNFSANVVVNGSTVNLGLWDTAGQEDY-------   67 (197)
Q Consensus         4 ~~~~~i~v~G~~~~GKstli~~~~~~~~-~~~~-------~~~~~-~~~~~~~~~~~~~~~~~i~D~~G~~~~-------   67 (197)
                      ...++|+++|.+|+|||||+++++.... ...+       .+|.. ......+..++..+.+.+|||||....       
T Consensus         6 g~~~~I~vvG~~g~GKSTLin~L~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~liDTpG~~d~~~~~~~~   85 (274)
T 3t5d_A            6 GFEFTLMVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVEQSKVLIKEGGVQLLLTIVDTPGFGDAVDNSNCW   85 (274)
T ss_dssp             -CEEEEEEEECTTSSHHHHHHHHSSSCC---------------CCCEEEEEEECC--CCEEEEEEECCCCSCCSCCTTTT
T ss_pred             ccEEEEEEECCCCCCHHHHHHHHhCCCccccCCCCcccccCCceEEEEEEEEEecCCeEEEEEEEECCCccccccchhhH
Confidence            4569999999999999999999876543 3333       33332 222333334555578999999997322       


Q ss_pred             cccc--------------------ccCcCCCcEEEEEEeCCCc-hhHHHHHHHHHHHHhhhCCCCCEEEEeeCCcccCCc
Q 036449           68 NRLR--------------------PLSYRGADVFILAFSLISK-ASYENVSKKWIPELKHYAPGVPIILVGTKLDLRDDK  126 (197)
Q Consensus        68 ~~~~--------------------~~~~~~~~~~i~v~d~~~~-~s~~~~~~~~~~~i~~~~~~~~~ivv~nK~D~~~~~  126 (197)
                      ..+.                    ...-..+|+++++++.+.. ..-.+  ..++..+..   +.|+++|+||+|+....
T Consensus        86 ~~i~~~i~~~~~~~l~~~~~~~r~~~~d~r~~~~l~~i~~~~~~~~~~d--~~~l~~l~~---~~pvi~V~nK~D~~~~~  160 (274)
T 3t5d_A           86 QPVIDYIDSKFEDYLNAESRVNRRQMPDNRVQCCLYFIAPSGHGLKPLD--IEFMKRLHE---KVNIIPLIAKADTLTPE  160 (274)
T ss_dssp             HHHHHHHHHHHHHHHHHHHSSCCCSCCCCCCCEEEEEECSCCSSCCHHH--HHHHHHHTT---TSCEEEEESSGGGSCHH
T ss_pred             HHHHHHHHHHHHHHHHhhcccccccccCCceeEEEEEecCCCCCCCHHH--HHHHHHHhc---cCCEEEEEeccCCCCHH
Confidence            1111                    1112247899999977652 22222  345555554   68999999999986432


Q ss_pred             ccccCCCCCCcccHHHHHHHHHHhCCCceEEeccCCCCCHHHHHHHHHHHH
Q 036449          127 QFFIDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQQNVKAVFDAAIRVV  177 (197)
Q Consensus       127 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~l~~~i~~~~  177 (197)
                      ..        ........+.....+. +++++||+++.|+++++++|.+.+
T Consensus       161 e~--------~~~~~~i~~~l~~~~i-~v~~~sa~~~~~~~~l~~~l~~~~  202 (274)
T 3t5d_A          161 EC--------QQFKKQIMKEIQEHKI-KIYEFPETDDEEENKLVKKIKDRL  202 (274)
T ss_dssp             HH--------HHHHHHHHHHHHHTTC-CCCCC-----------CHHHHHTC
T ss_pred             HH--------HHHHHHHHHHHHHcCC-eEEcCCCCCChhHHHHHHHHhcCC
Confidence            20        0111234455556676 799999999999999999998754

>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*

Probab=99.85  E-value=3.6e-22  Score=156.88  Aligned_cols=154  Identities=16%  Similarity=0.146  Sum_probs=101.3

Q ss_pred             ceeEEEEEcCCCCCHHHHHHHHhhCCCC--CCCCCceeeeeeEEEEECCeEEEEEEEeCCC--------ccccccccccC
Q 036449            5 RFIKCVTVGDGAVGKTCLLISYTSNTFP--TDYVPTVFDNFSANVVVNGSTVNLGLWDTAG--------QEDYNRLRPLS   74 (197)
Q Consensus         5 ~~~~i~v~G~~~~GKstli~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G--------~~~~~~~~~~~   74 (197)
                      +..+|+++|.+|||||||++++.+..+.  ...++++.+....  ........+++|||||        ++.+......+
T Consensus        22 ~~~~V~lvG~~nvGKSTL~n~l~~~~~~~v~~~~g~t~~~~~~--~~~~~~~~~~liDT~G~~~~~~~~~~~~~~~~~~~   99 (456)
T 4dcu_A           22 GKPVVAIVGRPNVGKSTIFNRIAGERISIVEDTPGVTRDRIYS--SAEWLNYDFNLIDTGGIDIGDEPFLAQIRQQAEIA   99 (456)
T ss_dssp             -CCEEEEECSSSSSHHHHHHHHEEEEEC-----------CEEE--ECTTCSSCCEEECCCC------CCHHHHHHHHHHH
T ss_pred             CCCEEEEECCCCCcHHHHHHHHhCCCCcccCCCCCcceeEEEE--EEEECCceEEEEECCCCCCcchHHHHHHHHHHHhh
Confidence            3578999999999999999999986543  2223333222222  2222335688999999        66677777778


Q ss_pred             cCCCcEEEEEEeCCCchhHHHHHHHHHHHHhhhCCCCCEEEEeeCCcccCCcccccCCCCCCcccHHHHHHHHHHhCCCc
Q 036449           75 YRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPISTAQGEELRKLIGAPA  154 (197)
Q Consensus        75 ~~~~~~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  154 (197)
                      +..+|++|+|+|..++.+..+  ..+...++..  +.|+++|+||+|+.....              ...++. ..+...
T Consensus       100 ~~~ad~il~VvD~~~~~~~~d--~~l~~~l~~~--~~pvilV~NK~D~~~~~~--------------~~~e~~-~lg~~~  160 (456)
T 4dcu_A          100 MDEADVIIFMVNGREGVTAAD--EEVAKILYRT--KKPVVLAVNKLDNTEMRA--------------NIYDFY-SLGFGE  160 (456)
T ss_dssp             HHHCSEEEEEEESSSCSCHHH--HHHHHHHTTC--CSCEEEEEECC-----------------------CCSG-GGSSSS
T ss_pred             HhhCCEEEEEEeCCCCCChHH--HHHHHHHHHc--CCCEEEEEECccchhhhh--------------hHHHHH-HcCCCc
Confidence            889999999999887654443  2445555543  899999999999864321              011111 233436


Q ss_pred             eEEeccCCCCCHHHHHHHHHHHHcC
Q 036449          155 YIECSSKTQQNVKAVFDAAIRVVLQ  179 (197)
Q Consensus       155 ~~~~sa~~~~~i~~l~~~i~~~~~~  179 (197)
                      .+++||++|.|+.++++.+.+.+..
T Consensus       161 ~~~iSA~~g~gv~~L~~~i~~~l~~  185 (456)
T 4dcu_A          161 PYPISGTHGLGLGDLLDAVAEHFKN  185 (456)
T ss_dssp             EEECCTTTCTTHHHHHHHHHTTGGG
T ss_pred             eEEeecccccchHHHHHHHHhhccc
Confidence            7899999999999999999887653

>1f60_A Elongation factor EEF1A; protein-protein complex, translation; 1.67A {Saccharomyces cerevisiae} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1g7c_A* 1ije_A* 1ijf_A* 2b7b_A* 2b7c_A

Probab=99.84  E-value=4.5e-21  Score=150.46  Aligned_cols=156  Identities=15%  Similarity=0.087  Sum_probs=102.8

Q ss_pred             CC-CCceeEEEEEcCCCCCHHHHHHHHhhC--CCCCC-------------------------------CCCceeeeeeEE
Q 036449            1 MS-ASRFIKCVTVGDGAVGKTCLLISYTSN--TFPTD-------------------------------YVPTVFDNFSAN   46 (197)
Q Consensus         1 m~-~~~~~~i~v~G~~~~GKstli~~~~~~--~~~~~-------------------------------~~~~~~~~~~~~   46 (197)
                      |. +...++|+++|++++|||||+++|+..  .+...                               .-.|.. .....
T Consensus         1 M~~~~~~~~i~iiG~~~~GKSTLi~~Ll~~~~~~~~~~~~~~~~~~~~~g~~~~~~a~~~d~~~~er~~GiTi~-~~~~~   79 (458)
T 1f60_A            1 MGKEKSHINVVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAELGKGSFKYAWVLDKLKAERERGITID-IALWK   79 (458)
T ss_dssp             -CCCCEEEEEEEEECTTSCHHHHHHHHHHHHSCSSHHHHHHHHHHGGGGSSSCCCHHHHHHHHHHHHHTTCCCS-CSCEE
T ss_pred             CCCCCceeEEEEEcCCCCCHHHHHHHHHHHcCCcChHHHHHhhhhHHhcCCcchhhhhhhccchhHHhcCcEEE-EEEEE
Confidence            55 356799999999999999999999863  22110                               001111 11112


Q ss_pred             EEECCeEEEEEEEeCCCccccccccccCcCCCcEEEEEEeCCCch---hH----HHHHHHHHHHHhhhCCCCC-EEEEee
Q 036449           47 VVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKA---SY----ENVSKKWIPELKHYAPGVP-IILVGT  118 (197)
Q Consensus        47 ~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~---s~----~~~~~~~~~~i~~~~~~~~-~ivv~n  118 (197)
                        ++.....+.+|||||+++|......++..+|++|+|+|++++.   +|    +..  ..+......  ++| +++|+|
T Consensus        80 --~~~~~~~~~iiDtPGh~~f~~~~~~~~~~aD~~ilVvda~~g~~~~sf~~~~qt~--~~~~~~~~~--~v~~iivviN  153 (458)
T 1f60_A           80 --FETPKYQVTVIDAPGHRDFIKNMITGTSQADCAILIIAGGVGEFEAGISKDGQTR--EHALLAFTL--GVRQLIVAVN  153 (458)
T ss_dssp             --EECSSEEEEEEECCCCTTHHHHHHHSSSCCSEEEEEEECSHHHHHHHTCTTSHHH--HHHHHHHHT--TCCEEEEEEE
T ss_pred             --EecCCceEEEEECCCcHHHHHHHHhhhhhCCEEEEEEeCCcCccccccCcchhHH--HHHHHHHHc--CCCeEEEEEE
Confidence              2223367889999999999988888999999999999999763   22    222  222223332  566 899999


Q ss_pred             CCcccCCcccccCCCCCCcccHHHHHHHHHHhCC----CceEEeccCCCCCHHHH
Q 036449          119 KLDLRDDKQFFIDHPGAVPISTAQGEELRKLIGA----PAYIECSSKTQQNVKAV  169 (197)
Q Consensus       119 K~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~sa~~~~~i~~l  169 (197)
                      |+|+.+...      .......++...++..++.    .+++++||++|.|+.++
T Consensus       154 K~Dl~~~~~------~~~~~i~~~~~~~l~~~g~~~~~~~~i~vSA~~g~nv~~~  202 (458)
T 1f60_A          154 KMDSVKWDE------SRFQEIVKETSNFIKKVGYNPKTVPFVPISGWNGDNMIEA  202 (458)
T ss_dssp             CGGGGTTCH------HHHHHHHHHHHHHHHHHTCCGGGCCEEECCTTTCBTTTBC
T ss_pred             ccccccCCH------HHHHHHHHHHHHHHHHcCCCccCceEEEeecccCcCcccc
Confidence            999974211      0001223455666677763    48999999999998743

>2elf_A Protein translation elongation factor 1A; tRNA, pyrrolysine, structural genomics, NPPSFA; HET: CIT; 1.70A {Methanosarcina mazei}

Probab=99.84  E-value=5e-21  Score=146.19  Aligned_cols=149  Identities=11%  Similarity=0.003  Sum_probs=103.0

Q ss_pred             EEEEEcCCCCCHHHHHHHHhhCCCCCCCCCceeeeeeEEEEECCeEEEEEEEeCCCccccccccccCcCCCcEEEEEEeC
Q 036449            8 KCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSL   87 (197)
Q Consensus         8 ~i~v~G~~~~GKstli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~   87 (197)
                      +|+++|++++|||||+++|...      ..|.. ...  ..+......+.+|||||+++|.......+..+|++|+|+| 
T Consensus        23 ~i~iiG~~d~GKSTL~~~L~~~------giTi~-~~~--~~~~~~~~~i~iiDtPGh~~f~~~~~~~~~~aD~ailVvd-   92 (370)
T 2elf_A           23 NVAIIGTEKSGRTSLAANLGKK------GTSSD-ITM--YNNDKEGRNMVFVDAHSYPKTLKSLITALNISDIAVLCIP-   92 (370)
T ss_dssp             EEEEEESTTSSHHHHHHTTSEE------EEESS-SEE--EEECSSSSEEEEEECTTTTTCHHHHHHHHHTCSEEEEEEC-
T ss_pred             EEEEECCCCCCHHHHHHHHHhC------CEEEE-eeE--EEEecCCeEEEEEECCChHHHHHHHHHHHHHCCEEEEEEc-
Confidence            8999999999999999999811      11111 111  1222223568899999999998777777899999999999 


Q ss_pred             CCchhHHHHHHHHHHHHhhhCCCCCE-EEEee-CCcccCCcccccCCCCCCcccHHHHHHHHHHhC--CCceEE--eccC
Q 036449           88 ISKASYENVSKKWIPELKHYAPGVPI-ILVGT-KLDLRDDKQFFIDHPGAVPISTAQGEELRKLIG--APAYIE--CSSK  161 (197)
Q Consensus        88 ~~~~s~~~~~~~~~~~i~~~~~~~~~-ivv~n-K~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~--~sa~  161 (197)
                      ++... ... ..++..+...  +.|. ++++| |+|+ +....        ....++.+++...++  ..++++  +||+
T Consensus        93 ~~g~~-~qt-~e~~~~~~~~--~i~~~ivvvNNK~Dl-~~~~~--------~~~~~~i~~~l~~~~~~~~~ii~~~~SA~  159 (370)
T 2elf_A           93 PQGLD-AHT-GECIIALDLL--GFKHGIIALTRSDST-HMHAI--------DELKAKLKVITSGTVLQDWECISLNTNKS  159 (370)
T ss_dssp             TTCCC-HHH-HHHHHHHHHT--TCCEEEEEECCGGGS-CHHHH--------HHHHHHHHHHTTTSTTTTCEEEECCCCTT
T ss_pred             CCCCc-HHH-HHHHHHHHHc--CCCeEEEEEEeccCC-CHHHH--------HHHHHHHHHHHHhcCCCceEEEecccccc
Confidence            65432 233 3455555544  6777 88999 9999 43210        011244455555443  238999  9999


Q ss_pred             C---CCCHHHHHHHHHHHHcC
Q 036449          162 T---QQNVKAVFDAAIRVVLQ  179 (197)
Q Consensus       162 ~---~~~i~~l~~~i~~~~~~  179 (197)
                      +   +.|++++++.|.+.+..
T Consensus       160 ~~~~g~gi~~L~~~l~~~~~~  180 (370)
T 2elf_A          160 AKNPFEGVDELKARINEVAEK  180 (370)
T ss_dssp             SSSTTTTHHHHHHHHHHHHHH
T ss_pred             cCcCCCCHHHHHHHHHhhccc
Confidence            9   99999999999987654

>1r5b_A Eukaryotic peptide chain release factor GTP-bindi subunit; translation termination, peptide release, GTPase, translatio; 2.35A {Schizosaccharomyces pombe} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1r5n_A* 1r5o_A* 3e20_A

Probab=99.84  E-value=1.4e-21  Score=153.71  Aligned_cols=160  Identities=19%  Similarity=0.147  Sum_probs=90.9

Q ss_pred             CCCceeEEEEEcCCCCCHHHHHHHHhh--CCCCC------------------------C-------CCCceeeeeeEEEE
Q 036449            2 SASRFIKCVTVGDGAVGKTCLLISYTS--NTFPT------------------------D-------YVPTVFDNFSANVV   48 (197)
Q Consensus         2 ~~~~~~~i~v~G~~~~GKstli~~~~~--~~~~~------------------------~-------~~~~~~~~~~~~~~   48 (197)
                      ...+.++|+++|+.++|||||+++|+.  +.+..                        +       ...|.... ...+.
T Consensus        39 ~~k~~~~i~iiG~vd~GKSTLi~~Ll~~~g~~~~~~~~~~~~~~~~~G~~~~~~~~~~D~~~~er~~giTi~~~-~~~~~  117 (467)
T 1r5b_A           39 YGKEHVNIVFIGHVDAGKSTLGGNILFLTGMVDKRTMEKIEREAKEAGKESWYLSWALDSTSEEREKGKTVEVG-RAYFE  117 (467)
T ss_dssp             SCCEEEEEEEEECGGGTHHHHHHHHHHHTTSSCHHHHHHHHHHTCC-----------------------------CCEEE
T ss_pred             cCCCeeEEEEEECCCCCHHHHHHHHHHHhCCCChHHHHHHHhHHHhcCCcchhhhhhcccchhhhhcCceEEee-eEEEe
Confidence            345679999999999999999999874  22210                        0       00111100 11222


Q ss_pred             ECCeEEEEEEEeCCCccccccccccCcCCCcEEEEEEeCCCch---hHHHH--HHHHHHHHhhhCCCCC-EEEEeeCCcc
Q 036449           49 VNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKA---SYENV--SKKWIPELKHYAPGVP-IILVGTKLDL  122 (197)
Q Consensus        49 ~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~---s~~~~--~~~~~~~i~~~~~~~~-~ivv~nK~D~  122 (197)
                      .++  ..+.+|||||+++|.......+..+|++|+|+|++++.   +|+..  ....+.....  .++| +++++||+|+
T Consensus       118 ~~~--~~~~iiDtPGh~~f~~~~~~~~~~aD~~ilVvDa~~g~~e~sf~~~~qt~e~l~~~~~--~~vp~iivviNK~Dl  193 (467)
T 1r5b_A          118 TEH--RRFSLLDAPGHKGYVTNMINGASQADIGVLVISARRGEFEAGFERGGQTREHAVLART--QGINHLVVVINKMDE  193 (467)
T ss_dssp             CSS--EEEEECCCCC-----------TTSCSEEEEEEECSTTHHHHTTSTTCCHHHHHHHHHH--TTCSSEEEEEECTTS
T ss_pred             cCC--eEEEEEECCCcHHHHHHHHhhcccCCEEEEEEeCCcCccccccCCCCcHHHHHHHHHH--cCCCEEEEEEECccC
Confidence            333  56889999999999998888999999999999999863   22211  0111222222  2677 9999999999


Q ss_pred             cCCcccccCCCCCCcccHHHHHHHHHHh-CC-----CceEEeccCCCCCHHHHH
Q 036449          123 RDDKQFFIDHPGAVPISTAQGEELRKLI-GA-----PAYIECSSKTQQNVKAVF  170 (197)
Q Consensus       123 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-----~~~~~~sa~~~~~i~~l~  170 (197)
                      ......    ........++...++... +.     .+++++||++|.|+.+++
T Consensus       194 ~~~~~~----~~~~~~i~~e~~~~l~~~~g~~~~~~~~~i~vSA~~g~~i~~l~  243 (467)
T 1r5b_A          194 PSVQWS----EERYKECVDKLSMFLRRVAGYNSKTDVKYMPVSAYTGQNVKDRV  243 (467)
T ss_dssp             TTCSSC----HHHHHHHHHHHHHHHHHHHCCCHHHHEEEEECBTTTTBTTSSCC
T ss_pred             CCcccc----HHHHHHHHHHHHHHHHHhcCCCccCCceEEeccccccccccccc
Confidence            542100    000012233456666665 43     269999999999998765

>3izq_1 HBS1P, elongation factor 1 alpha-like protein; NO-GO mRNA decay, ribosomal protein,hydrolase; 9.50A {Saccharomyces cerevisiae}

Probab=99.84  E-value=9.6e-21  Score=152.88  Aligned_cols=157  Identities=15%  Similarity=0.116  Sum_probs=100.4

Q ss_pred             CceeEEEEEcCCCCCHHHHHHHHhhCCCCCCC--------------------------------CCceeeeeeEEEEECC
Q 036449            4 SRFIKCVTVGDGAVGKTCLLISYTSNTFPTDY--------------------------------VPTVFDNFSANVVVNG   51 (197)
Q Consensus         4 ~~~~~i~v~G~~~~GKstli~~~~~~~~~~~~--------------------------------~~~~~~~~~~~~~~~~   51 (197)
                      ...++|+++|++++|||||+++|+.....-..                                ...+.......+...+
T Consensus       165 k~~lkV~ivG~~n~GKSTLin~Ll~~~~~i~~~~i~~~~~~~~~~g~~~~~~a~~~d~~~~e~~~GiTid~~~~~~~~~~  244 (611)
T 3izq_1          165 LPHLSFVVLGHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEERERGVTVSICTSHFSTHR  244 (611)
T ss_dssp             CCCCEEEEECCSSSCHHHHHHHHHSCSSCSCCHHHHHHHHHSSCSSSSCCSSSHHHHHHHHHHHTTTCCSCSCCEEECSS
T ss_pred             CCceEEEEEECCCCCHHHHHHHHHHhcCCccHHHHHHHHhhhhhccccccceeeeeccchhhhhCCeeEeeeeEEEecCC
Confidence            45799999999999999999999865321110                                1111111122233333


Q ss_pred             eEEEEEEEeCCCccccccccccCcCCCcEEEEEEeCCCchh---H--HHHHHHHHHHHhhhCCCCCEEEEeeCCcccCCc
Q 036449           52 STVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKAS---Y--ENVSKKWIPELKHYAPGVPIILVGTKLDLRDDK  126 (197)
Q Consensus        52 ~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s---~--~~~~~~~~~~i~~~~~~~~~ivv~nK~D~~~~~  126 (197)
                        ..+.||||||+++|......++..+|++|+|+|++++..   +  .......+...... ...|+++|+||+|+....
T Consensus       245 --~~~~iiDTPG~e~f~~~~~~~~~~aD~~llVVDa~~g~~e~~~~~~~qt~e~l~~~~~l-gi~~iIVVvNKiDl~~~~  321 (611)
T 3izq_1          245 --ANFTIVDAPGHRDFVPNAIMGISQADMAILCVDCSTNAFESGFDLDGQTKEHMLLASSL-GIHNLIIAMNKMDNVDWS  321 (611)
T ss_dssp             --CEEEEEECCSSSCHHHHHTTTSSCCSEEEEEEECSHHHHHTTCCTTSHHHHHHHHHHTT-TCCEEEEEEECTTTTTTC
T ss_pred             --ceEEEEECCCCcccHHHHHHHHhhcCceEEEEECCCCcccccchhhhHHHHHHHHHHHc-CCCeEEEEEecccccchh
Confidence              578899999999999999999999999999999987521   0  00101222222222 123599999999997632


Q ss_pred             ccccCCCCCCcccHHHHHHHHHHhCC----CceEEeccCCCCCHHHH
Q 036449          127 QFFIDHPGAVPISTAQGEELRKLIGA----PAYIECSSKTQQNVKAV  169 (197)
Q Consensus       127 ~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~sa~~~~~i~~l  169 (197)
                      ..      .......+...+....+.    .+++++||++|.|+.++
T Consensus       322 ~~------~~~ei~~~l~~~l~~~g~~~~~~~~i~vSA~tG~gI~el  362 (611)
T 3izq_1          322 QQ------RFEEIKSKLLPYLVDIGFFEDNINWVPISGFSGEGVYKI  362 (611)
T ss_dssp             HH------HHHHHHHHHHHHHHHHTCCGGGCEEEECCTTTCTTTSSC
T ss_pred             HH------HHHHHHHHHHHHHHhhcccccCccEEeeecccCCCcccc
Confidence            10      000112344455555543    37999999999999866

>3avx_A Elongation factor TS, elongation factor TU, linke replicase; RNA polymerase, translation, transferase-RNA complex; HET: GH3; 2.41A {Escherichia coli O157} PDB: 3agq_A 3agp_A* 3avu_A 3avv_A 3avt_A* 3avw_A* 3avy_A* 3mmp_A* 3mmp_G* 1efu_B

Probab=99.84  E-value=8.4e-21  Score=159.48  Aligned_cols=166  Identities=17%  Similarity=0.126  Sum_probs=112.2

Q ss_pred             CCceeEEEEEcCCCCCHHHHHHHHhhCC-------CCC-------CCCCceeeee-eEEEEECCeEEEEEEEeCCCcccc
Q 036449            3 ASRFIKCVTVGDGAVGKTCLLISYTSNT-------FPT-------DYVPTVFDNF-SANVVVNGSTVNLGLWDTAGQEDY   67 (197)
Q Consensus         3 ~~~~~~i~v~G~~~~GKstli~~~~~~~-------~~~-------~~~~~~~~~~-~~~~~~~~~~~~~~i~D~~G~~~~   67 (197)
                      ..+.++|+++|++++|||||+++|....       +..       ....+.+.+. .....++.....+.+|||||+++|
T Consensus       293 ~k~~lnIvIIGhvDvGKSTLInrLt~~~~~~G~a~f~~~a~lD~~~~ErerGITIdva~v~f~~~~~kI~IIDTPGHedF  372 (1289)
T 3avx_A          293 TKPHVNVGTIGHVDHGKTTLTAAITTVLAKTYGGAARAFDQIDNAPEEKARGITINTSHVEYDTPTRHYAHVDCPGHADY  372 (1289)
T ss_dssp             CCCEEEEEEEESTTSSHHHHHHHHHHHHHHHSCC---------------------CCSCEEEECSSCEEEEEECCCHHHH
T ss_pred             cCCeeEEEEEcCCCCCHHHHHHHHHhhhccccccccccccccccccccccCceeEEEEEEEEcCCCEEEEEEECCChHHH
Confidence            3466999999999999999999998631       000       0001111111 111223333467889999999999


Q ss_pred             ccccccCcCCCcEEEEEEeCCCchhHHHHHHHHHHHHhhhCCCCC-EEEEeeCCcccCCcccccCCCCCCcccHHHHHHH
Q 036449           68 NRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVP-IILVGTKLDLRDDKQFFIDHPGAVPISTAQGEEL  146 (197)
Q Consensus        68 ~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~~-~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~  146 (197)
                      .......+..+|++|+|+|++++...+..  .++..+...  ++| +++++||+|+.....       ......++...+
T Consensus       373 ~~~mi~gas~AD~aILVVDAtdGv~~QTr--EhL~ll~~l--gIP~IIVVINKiDLv~d~e-------~le~i~eEi~el  441 (1289)
T 3avx_A          373 VKNMITGAAQMDGAILVVAATDGPMPQTR--EHILLGRQV--GVPYIIVFLNKCDMVDDEE-------LLELVEMEVREL  441 (1289)
T ss_dssp             HHHHHHTSCCCSEEEEEEETTTCSCTTHH--HHHHHHHHH--TCSCEEEEEECCTTCCCHH-------HHHHHHHHHHHH
T ss_pred             HHHHHHHHhhCCEEEEEEcCCccCcHHHH--HHHHHHHHc--CCCeEEEEEeecccccchh-------hHHHHHHHHHHH
Confidence            88888889999999999999987544332  344445444  688 789999999975221       000123456677


Q ss_pred             HHHhCC----CceEEeccCCC--------CCHHHHHHHHHHHHcC
Q 036449          147 RKLIGA----PAYIECSSKTQ--------QNVKAVFDAAIRVVLQ  179 (197)
Q Consensus       147 ~~~~~~----~~~~~~sa~~~--------~~i~~l~~~i~~~~~~  179 (197)
                      ...++.    .+++++||++|        .|+.++++.|.+.+..
T Consensus       442 Lk~~G~~~~~vp~IpvSAktG~ng~~~w~eGI~eLleaL~~~Ip~  486 (1289)
T 3avx_A          442 LSQYDFPGDDTPIVRGSALKALEGDAEWEAKILELAGFLDSYIPE  486 (1289)
T ss_dssp             HHHTTSCTTTCCEEECCSTTTTTCCHHHHHHHHHHHHHHHHTSCC
T ss_pred             HHhccccccceeEEEEEeccCCCCCccccccchhhHhHHhhhcCC
Confidence            777663    38999999999        4699999999886654

>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8

Probab=99.83  E-value=2.8e-20  Score=131.73  Aligned_cols=163  Identities=13%  Similarity=-0.002  Sum_probs=100.2

Q ss_pred             CCceeEEEEEcCCCCCHHHHHHHHhhCCCCCCCCCceeeeee-EEEEECCeEEEEEEEeCCCccc----------ccccc
Q 036449            3 ASRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFS-ANVVVNGSTVNLGLWDTAGQED----------YNRLR   71 (197)
Q Consensus         3 ~~~~~~i~v~G~~~~GKstli~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~i~D~~G~~~----------~~~~~   71 (197)
                      ..+..+|+++|++|+|||||++++.+..+.....++.+.... ..+.+++   .+.+||+||...          +....
T Consensus        23 ~~~~~~v~lvG~~g~GKSTLl~~l~g~~~~~~~~~~~G~~~~~~~~~~~~---~~~l~Dt~G~~~~~~~~~~~~~~~~~~   99 (210)
T 1pui_A           23 SDTGIEVAFAGRSNAGKSSALNTLTNQKSLARTSKTPGRTQLINLFEVAD---GKRLVDLPGYGYAEVPEEMKRKWQRAL   99 (210)
T ss_dssp             CSCSEEEEEEECTTSSHHHHHTTTCCC-------------CCEEEEEEET---TEEEEECCCCC------CCHHHHHHHH
T ss_pred             CCCCcEEEEECCCCCCHHHHHHHHhCCCccccccCCCccceeeEEEEecC---CEEEEECcCCcccccCHHHHHHHHHHH
Confidence            456689999999999999999999877643333444433221 2222333   366999999742          22222


Q ss_pred             ccCc---CCCcEEEEEEeCCCchhHHHHHHHHHHHHhhhCCCCCEEEEeeCCcccCCcccccCCCCCCcccHHHHHHHHH
Q 036449           72 PLSY---RGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPISTAQGEELRK  148 (197)
Q Consensus        72 ~~~~---~~~~~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~  148 (197)
                      ..++   ..++++++++|++++.+..+.  .+...+...  +.|+++++||+|+.....        +....+.++.++.
T Consensus       100 ~~~~~~~~~~~~~~~v~d~~~~~~~~~~--~~~~~~~~~--~~~~~~v~nK~D~~s~~~--------~~~~~~~~~~~~~  167 (210)
T 1pui_A          100 GEYLEKRQSLQGLVVLMDIRHPLKDLDQ--QMIEWAVDS--NIAVLVLLTKADKLASGA--------RKAQLNMVREAVL  167 (210)
T ss_dssp             HHHHHHCTTEEEEEEEEETTSCCCHHHH--HHHHHHHHT--TCCEEEEEECGGGSCHHH--------HHHHHHHHHHHHG
T ss_pred             HHHHHhhhcccEEEEEEECCCCCchhHH--HHHHHHHHc--CCCeEEEEecccCCCchh--------HHHHHHHHHHHHH
Confidence            2222   568899999999987665432  222333333  689999999999865321        0011344555555


Q ss_pred             HhCC-CceEEeccCCCCCHHHHHHHHHHHHcCC
Q 036449          149 LIGA-PAYIECSSKTQQNVKAVFDAAIRVVLQP  180 (197)
Q Consensus       149 ~~~~-~~~~~~sa~~~~~i~~l~~~i~~~~~~~  180 (197)
                      ..+. ..++++||+++.+++++++.|.+.+.+.
T Consensus       168 ~~~~~~~~~~~Sal~~~~~~~l~~~l~~~~~~~  200 (210)
T 1pui_A          168 AFNGDVQVETFSSLKKQGVDKLRQKLDTWFSEM  200 (210)
T ss_dssp             GGCSCEEEEECBTTTTBSHHHHHHHHHHHHC--
T ss_pred             hcCCCCceEEEeecCCCCHHHHHHHHHHHHhhc
Confidence            5542 2678899999999999999999887653

>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*

Probab=99.83  E-value=2.4e-21  Score=144.44  Aligned_cols=159  Identities=21%  Similarity=0.177  Sum_probs=100.2

Q ss_pred             ceeEEEEEcCCCCCHHHHHHHHhhCCCCCC------CCCc-----------------------eeee-------------
Q 036449            5 RFIKCVTVGDGAVGKTCLLISYTSNTFPTD------YVPT-----------------------VFDN-------------   42 (197)
Q Consensus         5 ~~~~i~v~G~~~~GKstli~~~~~~~~~~~------~~~~-----------------------~~~~-------------   42 (197)
                      ..++|+|+|.+|+|||||++++.+..+.+.      ..|+                       +.+.             
T Consensus        25 ~~~~i~vvG~~~~GKSSLln~l~g~~~~~~~~~~~t~~p~~~~~~~~~~~~~~~~~~~g~~~tt~~~~~~~~~~~~~~i~  104 (299)
T 2aka_B           25 DLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNSTTEYAEFLHCKGKKFTDFEEVRLEIEAETDRVT  104 (299)
T ss_dssp             CCCEEEEEEBTTSCHHHHHHHHHTSCCSCCCSSCSCSSCEEEEEEECSSCEEEETTSTTCCBCCHHHHHHHHHHHHHHHC
T ss_pred             CCCeEEEEeCCCCCHHHHHHHHHCCCcCCCCCCcccccceEEEEecCCcccchhhhcCCcccCCHHHHHHHHHHHHHHhc
Confidence            457999999999999999999998876421      1122                       0000             


Q ss_pred             ------e--eEEEEE-CCeEEEEEEEeCCCcc-------------ccccccccCcCCCcEEE-EEEeCCCchhHHHHHHH
Q 036449           43 ------F--SANVVV-NGSTVNLGLWDTAGQE-------------DYNRLRPLSYRGADVFI-LAFSLISKASYENVSKK   99 (197)
Q Consensus        43 ------~--~~~~~~-~~~~~~~~i~D~~G~~-------------~~~~~~~~~~~~~~~~i-~v~d~~~~~s~~~~~~~   99 (197)
                            .  ...+.+ ......+.+|||||..             .+......++..++.+| +|+|+++..+..+. ..
T Consensus       105 g~~~gi~~~~~~~~~~~~~~~~l~lvDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~~~~~~~-~~  183 (299)
T 2aka_B          105 GTNKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDA-LK  183 (299)
T ss_dssp             SSTTCCCSCCEEEEEEETTCCSEEEEECCCBCSSCCSSSCTTHHHHHHHHHHHHHTSTTEEEEEEEESSSCGGGCHH-HH
T ss_pred             ccCCCccccceEEEEeCCCCCCceEEeCCCCCCCcCCCCCchHHHHHHHHHHHHHcCCCeEEEEEecCCcchhhhHH-HH
Confidence                  0  000000 0012568899999964             23345556777888666 79999886554443 24


Q ss_pred             HHHHHhhhCCCCCEEEEeeCCcccCCcccccCCCCCCcccHHHHHHH--HHHhCCCceEEeccCCCCCHHHHHHHHHHH
Q 036449          100 WIPELKHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPISTAQGEEL--RKLIGAPAYIECSSKTQQNVKAVFDAAIRV  176 (197)
Q Consensus       100 ~~~~i~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~sa~~~~~i~~l~~~i~~~  176 (197)
                      +...+...  +.|+++|+||+|+.+...          ...+..+..  ....+..+++++||+++.|+++++++|.+.
T Consensus       184 ~~~~~~~~--~~~~i~V~NK~Dl~~~~~----------~~~~~~~~~~~~~~~~~~~v~~~SA~~~~gi~~l~~~l~~~  250 (299)
T 2aka_B          184 IAKEVDPQ--GQRTIGVITKLDLMDEGT----------DARDVLENKLLPLRRGYIGVVNRSQKDIDGKKDITAALAAE  250 (299)
T ss_dssp             HHHHHCTT--CSSEEEEEECGGGSCTTC----------CCHHHHTTCSSCCTTCEEECCCCCCBCTTSCBCHHHHHHHH
T ss_pred             HHHHhCCC--CCeEEEEEEccccCCCCc----------hHHHHHhCCcCcCCCCcEEEECCChhhccccccHHHHHHHH
Confidence            55555443  789999999999975432          111111110  001122367889999999999999998873

>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*

Probab=99.82  E-value=6.5e-20  Score=134.29  Aligned_cols=119  Identities=15%  Similarity=0.208  Sum_probs=85.2

Q ss_pred             CceeEEEEEcCCCCCHHHHHHHHhhCCC--CCCCCCceeeeeeEEEEECCeEEEEEEEeCCCccccccccccCcC-----
Q 036449            4 SRFIKCVTVGDGAVGKTCLLISYTSNTF--PTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYR-----   76 (197)
Q Consensus         4 ~~~~~i~v~G~~~~GKstli~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~-----   76 (197)
                      .+.++|+++|.+|+|||||++++.+..+  ...+.+++..........++  ..+.+|||||+.++......+++     
T Consensus        34 ~~~~~I~lvG~~g~GKSSLin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~l~liDTpG~~~~~~~~~~~~~~i~~~  111 (262)
T 3def_A           34 MNSMTVLVLGKGGVGKSSTVNSLIGEQVVRVSPFQAEGLRPVMVSRTMGG--FTINIIDTPGLVEAGYVNHQALELIKGF  111 (262)
T ss_dssp             CCEEEEEEEECTTSSHHHHHHHHHTSCCSCCCSSCC-CCCCEEEEEEETT--EEEEEEECCCSEETTEECHHHHHHHHHH
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCcceeeEEEEEEECC--eeEEEEECCCCCCcccchHHHHHHHHHH
Confidence            3679999999999999999999998774  34444444444444555666  47789999999877655444332     


Q ss_pred             ----CCcEEEEEEeCCCchhHHHHHHHHHHHHhhhC-CC--CCEEEEeeCCcccCC
Q 036449           77 ----GADVFILAFSLISKASYENVSKKWIPELKHYA-PG--VPIILVGTKLDLRDD  125 (197)
Q Consensus        77 ----~~~~~i~v~d~~~~~s~~~~~~~~~~~i~~~~-~~--~~~ivv~nK~D~~~~  125 (197)
                          .+|++++|+|++... +......|+..+.... ++  .|+++|+||+|+.+.
T Consensus       112 l~~~~~~~il~V~~~d~~~-~~~~~~~~~~~l~~~~~~~~~~~~ivv~nK~Dl~~~  166 (262)
T 3def_A          112 LVNRTIDVLLYVDRLDVYA-VDELDKQVVIAITQTFGKEIWCKTLLVLTHAQFSPP  166 (262)
T ss_dssp             TTTCEECEEEEEEESSCSC-CCHHHHHHHHHHHHHHCGGGGGGEEEEEECTTCCCS
T ss_pred             HhcCCCCEEEEEEcCCCCC-CCHHHHHHHHHHHHHhchhhhcCEEEEEeCcccCCC
Confidence                789999999987654 3333346667666654 22  499999999999643

>3mca_A HBS1, elongation factor 1 alpha-like protein; protein protein complex, translation regulation; 2.74A {Schizosaccharomyces pombe}

Probab=99.81  E-value=3.3e-21  Score=155.14  Aligned_cols=164  Identities=16%  Similarity=0.178  Sum_probs=89.9

Q ss_pred             CceeEEEEEcCCCCCHHHHHHHHhhCC--CCCC------------------------------CCCceeeeeeEEEEECC
Q 036449            4 SRFIKCVTVGDGAVGKTCLLISYTSNT--FPTD------------------------------YVPTVFDNFSANVVVNG   51 (197)
Q Consensus         4 ~~~~~i~v~G~~~~GKstli~~~~~~~--~~~~------------------------------~~~~~~~~~~~~~~~~~   51 (197)
                      ...++|+++|++++|||||+++|+...  +...                              ...++.......  +..
T Consensus       175 k~~~~I~iiG~~d~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~E~~~GiTid~~~~~--~~~  252 (592)
T 3mca_A          175 KPVVHLVVTGHVDSGKSTMLGRIMFELGEINSRSMQKLHNEAANSGKGSFSYAWLLDTTEEERARGVTMDVASTT--FES  252 (592)
T ss_dssp             CCEEEEEEECCSSSTHHHHHHHHHHHHHCC--------------------------------------------------
T ss_pred             CCccEEEEEcCCCCCHHHHHHHHHHHcCCcchHHHHHHHHhHhhcCCcchhhhhhhccchhhhcCCeeEEeeEEE--EEe
Confidence            467899999999999999999996321  1100                              000011111111  122


Q ss_pred             eEEEEEEEeCCCccccccccccCcCCCcEEEEEEeCCCch---hH--HHHHHHHHHHHhhhCCCCC-EEEEeeCCcccCC
Q 036449           52 STVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKA---SY--ENVSKKWIPELKHYAPGVP-IILVGTKLDLRDD  125 (197)
Q Consensus        52 ~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~---s~--~~~~~~~~~~i~~~~~~~~-~ivv~nK~D~~~~  125 (197)
                      ....+.||||||++.|.......+..+|++|+|+|++++.   .+  .......+..+...  ++| +++|+||+|+...
T Consensus       253 ~~~~i~iiDTPGh~~f~~~~~~~~~~aD~alLVVDa~~g~~e~gi~~~~qt~e~l~~~~~l--gip~iIvviNKiDl~~~  330 (592)
T 3mca_A          253 DKKIYEIGDAPGHRDFISGMIAGASSADFAVLVVDSSQNNFERGFLENGQTREHAYLLRAL--GISEIVVSVNKLDLMSW  330 (592)
T ss_dssp             ------CCEEESSSEEEEECCC-------CCSEEEEEECCSSTTSCSCSSHHHHHHHHHHS--SCCCEEEEEECGGGGTT
T ss_pred             CCeEEEEEECCChHHHHHHHHHHHhhCCEEEEEEECCCCccccccccchHHHHHHHHHHHc--CCCeEEEEEeccccccc
Confidence            3367889999999999999989999999999999998642   11  11101222233333  565 9999999999753


Q ss_pred             cccccCCCCCCcccHHHHHHHH-HHhCCC----ceEEeccCCCCCHH--------------HHHHHHHHHH
Q 036449          126 KQFFIDHPGAVPISTAQGEELR-KLIGAP----AYIECSSKTQQNVK--------------AVFDAAIRVV  177 (197)
Q Consensus       126 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~----~~~~~sa~~~~~i~--------------~l~~~i~~~~  177 (197)
                      ...      .......+...+. ...+..    +++++||++|.|+.              .|++.|.+.+
T Consensus       331 ~~~------~~~~i~~el~~~l~~~~g~~~~~~~ii~iSA~~G~gI~e~~~~~~~~w~~g~~Lle~l~~~~  395 (592)
T 3mca_A          331 SED------RFQEIKNIVSDFLIKMVGFKTSNVHFVPISAISGTNLIQKDSSDLYKWYKGPTLLSALDQLV  395 (592)
T ss_dssp             CHH------HHHHHHHHHHHHHTTTSCCCGGGEEEEEECSSSCSSSCSCCCCGGGGTCCSCCHHHHHHTSC
T ss_pred             cHH------HHHHHHHHHHHHHHHhhCCCccceEEEEEecccCcccccccccccccccchHHHHHHHHhhc
Confidence            210      0001122333443 334442    68999999999998              6777776644

>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8

Probab=99.81  E-value=2.1e-20  Score=139.34  Aligned_cols=134  Identities=16%  Similarity=0.135  Sum_probs=108.9

Q ss_pred             HHHHHHhhCCCC-CCCCCceeeeeeEEEEECCeEEEEEEEeCCCccccccccccCcCCCcEEEEEEeCCCch-hHHHHHH
Q 036449           21 CLLISYTSNTFP-TDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKA-SYENVSK   98 (197)
Q Consensus        21 tli~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~-s~~~~~~   98 (197)
                      +|+.++..+.|. ..+.||.++.+......++   .+++||+  +++|..++..++.++|++|+|||++++. ++..+ .
T Consensus        32 sl~~~~~~~~f~~~~~~pTiGd~~~~~~~~~~---~~~iwD~--qer~~~l~~~~~~~ad~vilV~D~~~~~~s~~~l-~  105 (301)
T 1u0l_A           32 ERILCKLRGKFRLQNLKIYVGDRVEYTPDETG---SGVIENV--LHRKNLLTKPHVANVDQVILVVTVKMPETSTYII-D  105 (301)
T ss_dssp             CEEEEEECGGGTTTTCCCCTTCEEEEECCCSS---SEEEEEE--CCCSCEETTTTEESCCEEEEEECSSTTCCCHHHH-H
T ss_pred             cEEEEEEcccccccCCCCCCccEEEEEEcCCC---eEEEEEE--ccccceeeccccccCCEEEEEEeCCCCCCCHHHH-H
Confidence            678888888888 7888999877664432222   5789999  9999999999999999999999999997 67776 7


Q ss_pred             HHHHHHhhhCCCCCEEEEeeCCcccCCcccccCCCCCCcccHHHHHHHHHHhC--CCceEEeccCCCCCHHHHHHHHHH
Q 036449           99 KWIPELKHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPISTAQGEELRKLIG--APAYIECSSKTQQNVKAVFDAAIR  175 (197)
Q Consensus        99 ~~~~~i~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~sa~~~~~i~~l~~~i~~  175 (197)
                      .|+..+...  ++|+++|+||+|+.+.+.          +  +++.++++.++  . +++++||++|.|++++|..+..
T Consensus       106 ~~l~~~~~~--~~piilv~NK~DL~~~~~----------v--~~~~~~~~~~~~~~-~~~~~SAktg~gv~~lf~~l~g  169 (301)
T 1u0l_A          106 KFLVLAEKN--ELETVMVINKMDLYDEDD----------L--RKVRELEEIYSGLY-PIVKTSAKTGMGIEELKEYLKG  169 (301)
T ss_dssp             HHHHHHHHT--TCEEEEEECCGGGCCHHH----------H--HHHHHHHHHHTTTS-CEEECCTTTCTTHHHHHHHHSS
T ss_pred             HHHHHHHHC--CCCEEEEEeHHHcCCchh----------H--HHHHHHHHHHhhhC-cEEEEECCCCcCHHHHHHHhcC
Confidence            888877653  899999999999965332          1  44667777776  6 8999999999999999988754

>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*

Probab=99.81  E-value=4.2e-19  Score=144.87  Aligned_cols=116  Identities=20%  Similarity=0.107  Sum_probs=81.7

Q ss_pred             CceeEEEEEcCCCCCHHHHHHHHhhCCCCCCCCCce----------------e-eeeeEEEEECCeEEEEEEEeCCCccc
Q 036449            4 SRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTV----------------F-DNFSANVVVNGSTVNLGLWDTAGQED   66 (197)
Q Consensus         4 ~~~~~i~v~G~~~~GKstli~~~~~~~~~~~~~~~~----------------~-~~~~~~~~~~~~~~~~~i~D~~G~~~   66 (197)
                      .+..+|+++|+.|+|||||++++...........+.                + ........+....+.+++|||||+.+
T Consensus         7 ~~~~~i~IiG~~gaGKTTLl~~L~~~~~~~~~~G~V~~g~~~~d~~~~e~~~giti~~~~~~~~~~~~~~nliDTpG~~~   86 (665)
T 2dy1_A            7 AMIRTVALVGHAGSGKTTLTEALLYKTGAKERRGRVEEGTTTTDYTPEAKLHRTTVRTGVAPLLFRGHRVFLLDAPGYGD   86 (665)
T ss_dssp             CCEEEEEEEESTTSSHHHHHHHHHHHTTSSSSCCCGGGTCCSSCCSHHHHHTTSCCSCEEEEEEETTEEEEEEECCCSGG
T ss_pred             CCCcEEEEECCCCChHHHHHHHHHHhcCCCCccceecCCcccccCCHHHHhcCCeEEecceEEeeCCEEEEEEeCCCccc
Confidence            456899999999999999999998433211000000                0 01111122222247788999999999


Q ss_pred             cccccccCcCCCcEEEEEEeCCCchhHHHHHHHHHHHHhhhCCCCCEEEEeeCCccc
Q 036449           67 YNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLR  123 (197)
Q Consensus        67 ~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~~~ivv~nK~D~~  123 (197)
                      |......++..+|++++|+|.++....+..  .++..+...  +.|+++|+||+|+.
T Consensus        87 f~~~~~~~l~~ad~~ilVvD~~~g~~~qt~--~~~~~~~~~--~ip~ilv~NKiD~~  139 (665)
T 2dy1_A           87 FVGEIRGALEAADAALVAVSAEAGVQVGTE--RAWTVAERL--GLPRMVVVTKLDKG  139 (665)
T ss_dssp             GHHHHHHHHHHCSEEEEEEETTTCSCHHHH--HHHHHHHHT--TCCEEEEEECGGGC
T ss_pred             hHHHHHHHHhhcCcEEEEEcCCcccchhHH--HHHHHHHHc--cCCEEEEecCCchh
Confidence            988888889999999999999887665443  444555444  79999999999986

>2h5e_A Peptide chain release factor RF-3; beta barrel, translation; HET: GDP; 2.80A {Escherichia coli} PDB: 2o0f_A 3sfs_W* 3zvo_Y* 3uoq_W*

Probab=99.79  E-value=5.1e-18  Score=134.97  Aligned_cols=116  Identities=14%  Similarity=0.093  Sum_probs=79.8

Q ss_pred             CceeEEEEEcCCCCCHHHHHHHHhhCCCCCCCC----------Cce----------eee---eeEEEEECCeEEEEEEEe
Q 036449            4 SRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYV----------PTV----------FDN---FSANVVVNGSTVNLGLWD   60 (197)
Q Consensus         4 ~~~~~i~v~G~~~~GKstli~~~~~~~~~~~~~----------~~~----------~~~---~~~~~~~~~~~~~~~i~D   60 (197)
                      .+..+|+++|++|+|||||+++++.....-...          .+.          +..   ....+...+  +.+.+||
T Consensus        11 ~~~~~I~IiG~~~aGKTTL~~~Ll~~~g~i~~~g~v~~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~~~~--~~i~liD   88 (529)
T 2h5e_A           11 AKRRTFAIISHPDAGKTTITEKVLLFGQAIQTAGTVKGRGSNQHAKSDWMEMEKQRGISITTSVMQFPYHD--CLVNLLD   88 (529)
T ss_dssp             HTEEEEEEEECTTSSHHHHHHHHHHSCC-------------------------------CCTTEEEEEETT--EEEEEEC
T ss_pred             cCCCEEEEECCCCChHHHHHHHHHhhcCCccccceeecCccccceeeccchhcccCCcceeeeEEEEEECC--eEEEEEE
Confidence            357899999999999999999998632110000          000          000   011223333  6788999


Q ss_pred             CCCccccccccccCcCCCcEEEEEEeCCCchhHHHHHHHHHHHHhhhCCCCCEEEEeeCCcccCC
Q 036449           61 TAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLRDD  125 (197)
Q Consensus        61 ~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~~~ivv~nK~D~~~~  125 (197)
                      |||+..|......++..+|++|+|+|++++.....  ..++..+...  ++|+++++||+|+...
T Consensus        89 TPG~~df~~~~~~~l~~aD~~IlVvDa~~g~~~~t--~~~~~~~~~~--~ipiivviNK~Dl~~~  149 (529)
T 2h5e_A           89 TPGHEDFSEDTYRTLTAVDCCLMVIDAAKGVEDRT--RKLMEVTRLR--DTPILTFMNKLDRDIR  149 (529)
T ss_dssp             CCCSTTCCHHHHHGGGGCSEEEEEEETTTCSCHHH--HHHHHHHTTT--TCCEEEEEECTTSCCS
T ss_pred             CCCChhHHHHHHHHHHHCCEEEEEEeCCccchHHH--HHHHHHHHHc--CCCEEEEEcCcCCccc
Confidence            99999998888888999999999999998754332  2334444333  7999999999999754

>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*

Probab=99.79  E-value=1.1e-18  Score=128.32  Aligned_cols=118  Identities=16%  Similarity=0.168  Sum_probs=81.4

Q ss_pred             ceeEEEEEcCCCCCHHHHHHHHhhCCCC--CCCCCceeeeeeEEEEECCeEEEEEEEeCCCcccccccccc---------
Q 036449            5 RFIKCVTVGDGAVGKTCLLISYTSNTFP--TDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQEDYNRLRPL---------   73 (197)
Q Consensus         5 ~~~~i~v~G~~~~GKstli~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~---------   73 (197)
                      +.++|+++|.+|+|||||++++++..+.  ....+++..........++  ..+.+|||||+.++......         
T Consensus        38 ~~~~I~vvG~~g~GKSSLin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~l~iiDTpG~~~~~~~~~~~~~~i~~~~  115 (270)
T 1h65_A           38 NSLTILVMGKGGVGKSSTVNSIIGERVVSISPFQSEGPRPVMVSRSRAG--FTLNIIDTPGLIEGGYINDMALNIIKSFL  115 (270)
T ss_dssp             CEEEEEEEESTTSSHHHHHHHHHTSCCSCCCSSSCCCSSCEEEEEEETT--EEEEEEECCCSEETTEECHHHHHHHHHHT
T ss_pred             CCeEEEEECCCCCCHHHHHHHHhCCCcccccCCCCcceeeEEEEEeeCC--eEEEEEECCCCCCCccchHHHHHHHHHHh
Confidence            5799999999999999999999987753  3333333323333333444  67889999998776533221         


Q ss_pred             CcCCCcEEEEEEeCCCchhHHHHHHHHHHHHhhhCC-C--CCEEEEeeCCcccCC
Q 036449           74 SYRGADVFILAFSLISKASYENVSKKWIPELKHYAP-G--VPIILVGTKLDLRDD  125 (197)
Q Consensus        74 ~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~-~--~~~ivv~nK~D~~~~  125 (197)
                      ....+|++++|+|++.. ++......|+..+..... +  .|+++|+||+|+.+.
T Consensus       116 ~~~~~d~il~v~~~d~~-~~~~~~~~~~~~l~~~~~~~~~~~iivV~nK~Dl~~~  169 (270)
T 1h65_A          116 LDKTIDVLLYVDRLDAY-RVDNLDKLVAKAITDSFGKGIWNKAIVALTHAQFSPP  169 (270)
T ss_dssp             TTCEECEEEEEEESSCC-CCCHHHHHHHHHHHHHHCGGGGGGEEEEEECCSCCCG
T ss_pred             hcCCCCEEEEEEeCCCC-cCCHHHHHHHHHHHHHhCcccccCEEEEEECcccCCc
Confidence            23468999999998754 343333467777765532 2  699999999999654

>2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A {Nostoc punctiforme} PDB: 2j68_A 2w6d_A*

Probab=99.79  E-value=6.1e-19  Score=144.49  Aligned_cols=171  Identities=12%  Similarity=0.136  Sum_probs=106.8

Q ss_pred             ceeEEEEEcCCCCCHHHHHHHHhhCCCCC-CCCCcee--------eeeeEEEEE--------------------------
Q 036449            5 RFIKCVTVGDGAVGKTCLLISYTSNTFPT-DYVPTVF--------DNFSANVVV--------------------------   49 (197)
Q Consensus         5 ~~~~i~v~G~~~~GKstli~~~~~~~~~~-~~~~~~~--------~~~~~~~~~--------------------------   49 (197)
                      ..++|+|+|.+|+|||||+|++++..+.. ...|++.        ........+                          
T Consensus        68 ~~~~V~VvG~~naGKSSLlNaLlg~~~~~v~~~p~T~~~~~i~~g~~~~~t~~~~~g~~~~~~~~~~i~~~~~i~~~~~~  147 (695)
T 2j69_A           68 GVFRLLVLGDMKRGKSTFLNALIGENLLPSDVNPCTAVLTVLRYGPEKKVTIHFNDGKSPQQLDFQNFKYKYTIDPAEAK  147 (695)
T ss_dssp             CCEEEEEECCTTSCHHHHHHHHHTSSCSCCCCCTTTCCCEEEEECSSCEEEEEESSSCCCCEEEHHHHHHHSCCCHHHHH
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCCCCccceEEEEeCCCCeEEEEEcCCCcccccChhhhhhhhcCCHHHHH
Confidence            56899999999999999999999876422 2222220        000001111                          


Q ss_pred             --------------------CCeE--EEEEEEeCCCccc---cccccccCcCCCcEEEEEEeCCCchhHHHHHHHHHHHH
Q 036449           50 --------------------NGST--VNLGLWDTAGQED---YNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPEL  104 (197)
Q Consensus        50 --------------------~~~~--~~~~i~D~~G~~~---~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~i  104 (197)
                                          +...  ..+.+|||||...   .......++..+|++|+|+|.+++.+..+. ..|...+
T Consensus       148 ~l~~~~~~~~~~v~~i~i~~p~~~l~~~l~LiDTPGl~~~~~~~~~~~~~i~~aD~vL~Vvda~~~~s~~e~-~~l~~~l  226 (695)
T 2j69_A          148 KLEQEKKQAFPDVDYAVVEYPLTLLQKGIEIVDSPGLNDTEARNELSLGYVNNCHAILFVMRASQPCTLGER-RYLENYI  226 (695)
T ss_dssp             HHHTSSCCSCTTEEEEEEEECCHHHHTTEEEEECCCHHHHHTCHHHHTHHHHSSSEEEEEEETTSTTCHHHH-HHHHHHT
T ss_pred             HHhhccccccccceEEEEEccchhccCCeEEEECCCCCchhhHHHHHHHHHHhCCEEEEEEeCCCccchhHH-HHHHHHH
Confidence                                0000  2478999999654   334455677889999999999998887776 4555455


Q ss_pred             hhhCCCCCEEEEeeCCcccCCcccccCCCCCCccc--HHHHH-----HHHHHhC-------CCceEEeccC---------
Q 036449          105 KHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPIS--TAQGE-----ELRKLIG-------APAYIECSSK---------  161 (197)
Q Consensus       105 ~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~--~~~~~-----~~~~~~~-------~~~~~~~sa~---------  161 (197)
                      ...  +.|+++|+||+|+......  +........  .....     .+....+       ..+++++||+         
T Consensus       227 ~~~--~~~iiiVlNK~Dl~~~~~~--~~ee~e~l~~~~~~i~~~~~~~l~~~~~~~g~~~~~~~v~~vSAk~al~~~~~~  302 (695)
T 2j69_A          227 KGR--GLTVFFLVNAWDQVRESLI--DPDDVEELQASENRLRQVFNANLAEYCTVEGQNIYDERVFELSSIQALRRRLKN  302 (695)
T ss_dssp             TTS--CCCEEEEEECGGGGGGGCS--STTCHHHHHHHHHHHHHHHHHHHGGGGBSSSCBCGGGTEEECCHHHHHHHHHHC
T ss_pred             Hhh--CCCEEEEEECccccccccc--ChhhHHHHHHHHHHHHHHHHHHHHHhhcccccccCCCcEEEEeChHHHHhhccC
Confidence            433  6789999999999653210  000000000  00111     1111111       1268999999         


Q ss_pred             -----CCCCHHHHHHHHHHHHcCC
Q 036449          162 -----TQQNVKAVFDAAIRVVLQP  180 (197)
Q Consensus       162 -----~~~~i~~l~~~i~~~~~~~  180 (197)
                           ++.|+++++..|.+.+...
T Consensus       303 ~~~~~~~~Gi~~L~~~L~~~l~~~  326 (695)
T 2j69_A          303 PQADLDGTGFPKFMDSLNTFLTRE  326 (695)
T ss_dssp             TTCCCTTSSHHHHHHHHHHHHHHT
T ss_pred             chhhhhccCHHHHHHHHHHHHHHh
Confidence                 9999999999999877654

>1dar_A EF-G, elongation factor G; ribosomal translocase, translational GTPase; HET: GDP; 2.40A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 PDB: 1elo_A 1ktv_A 2om7_L* 2wri_Y* 2wrk_Y* 2xsy_Y* 2xuy_Y* 2j7k_A* 2efg_A* 1jqm_B 1efg_A* 1fnm_A* 1pn6_A 2bm1_A* 2bm0_A* 2bv3_A* 3izp_E 1zn0_B 1jqs_C 2bcw_C ...

Probab=99.78  E-value=3.2e-18  Score=140.12  Aligned_cols=115  Identities=18%  Similarity=0.157  Sum_probs=82.5

Q ss_pred             CceeEEEEEcCCCCCHHHHHHHHhhC--CCC------C------------CCCCceeeeeeEEEEECCeEEEEEEEeCCC
Q 036449            4 SRFIKCVTVGDGAVGKTCLLISYTSN--TFP------T------------DYVPTVFDNFSANVVVNGSTVNLGLWDTAG   63 (197)
Q Consensus         4 ~~~~~i~v~G~~~~GKstli~~~~~~--~~~------~------------~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G   63 (197)
                      .+..+|+++|+.|+|||||+++++..  .+.      .            ....|.. .....+.+.+  +.+++|||||
T Consensus        10 ~~~~~I~IvG~~~aGKTTL~~~Ll~~~g~~~~~g~v~~~~~~~d~~~~E~~~giTi~-~~~~~~~~~~--~~i~liDTPG   86 (691)
T 1dar_A           10 KRLRNIGIAAHIDAGKTTTTERILYYTGRIHKIGEVHEGAATMDFMEQERERGITIT-AAVTTCFWKD--HRINIIDTPG   86 (691)
T ss_dssp             GGEEEEEEEECTTSCHHHHHHHHHHHHCC-----------------------------CCEEEEEETT--EEEEEECCCS
T ss_pred             ccccEEEEECCCCCCHHHHHHHHHHhcCCCcccceecCCceeccCchhhhhcccccc-cceEEEEECC--eEEEEEECcC
Confidence            46789999999999999999999842  111      0            0111111 1112233343  6788999999


Q ss_pred             ccccccccccCcCCCcEEEEEEeCCCchhHHHHHHHHHHHHhhhCCCCCEEEEeeCCcccCC
Q 036449           64 QEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLRDD  125 (197)
Q Consensus        64 ~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~~~ivv~nK~D~~~~  125 (197)
                      +.+|...+..++..+|++|+|+|++++.+.+.. ..|.. +...  +.|+++|+||+|+...
T Consensus        87 ~~df~~~~~~~l~~aD~~ilVvDa~~g~~~~t~-~~~~~-~~~~--~~p~ivviNKiD~~~~  144 (691)
T 1dar_A           87 HVDFTIEVERSMRVLDGAIVVFDSSQGVEPQSE-TVWRQ-AEKY--KVPRIAFANKMDKTGA  144 (691)
T ss_dssp             STTCHHHHHHHHHHCSEEEEEEETTTCSCHHHH-HHHHH-HHHT--TCCEEEEEECTTSTTC
T ss_pred             ccchHHHHHHHHHHCCEEEEEEECCCCcchhhH-HHHHH-HHHc--CCCEEEEEECCCcccC
Confidence            999988888889999999999999998887765 44443 3333  7999999999999754

>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*

Probab=99.78  E-value=1e-19  Score=135.51  Aligned_cols=161  Identities=15%  Similarity=0.113  Sum_probs=85.5

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHhhC-CCCCCC--------CCceee-eeeEEEEECCeEEEEEEEeCCCc-------cccc
Q 036449            6 FIKCVTVGDGAVGKTCLLISYTSN-TFPTDY--------VPTVFD-NFSANVVVNGSTVNLGLWDTAGQ-------EDYN   68 (197)
Q Consensus         6 ~~~i~v~G~~~~GKstli~~~~~~-~~~~~~--------~~~~~~-~~~~~~~~~~~~~~~~i~D~~G~-------~~~~   68 (197)
                      .++|+++|++|+|||||++.+... .++...        .++... .........+....+++||++|.       +.+.
T Consensus        18 ~~~I~lvG~nG~GKSTLl~~L~g~~~~~~~gi~~~g~~~~~t~~~~~~~~~~q~~~~~~~ltv~Dt~g~~~~~~~~e~~~   97 (301)
T 2qnr_A           18 EFTLMVVGESGLGKSTLINSLFLTDLYPERVISGAAEKIERTVQIEASTVEIEERGVKLRLTVVDTPGYGDAINCRDCFK   97 (301)
T ss_dssp             CEEEEEEEETTSSHHHHHHHHHC------------------------CEEEEC---CCEEEEEEEEC-----------CT
T ss_pred             CEEEEEECCCCCCHHHHHHHHhCCCccCCCCcccCCcccCCcceEeeEEEEecCCCcccCcchhhhhhhhhhcCcHHHHH
Confidence            489999999999999999998764 333322        111111 11111122344567899999998       4444


Q ss_pred             cccc-------cCcC-------------CCcEEEEEEeCCCchhHHHHHHHHHHHHhhhCCCCCEEEEeeCCcccCCccc
Q 036449           69 RLRP-------LSYR-------------GADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLRDDKQF  128 (197)
Q Consensus        69 ~~~~-------~~~~-------------~~~~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~~~ivv~nK~D~~~~~~~  128 (197)
                      .+..       .++.             .+++++++.+.+. .+++.....   .+....++.++++|+||+|+..... 
T Consensus        98 ~l~~~l~~~~~~~~~~~sgg~rqrv~~ara~~ll~ldePt~-~~Ld~~~~~---~l~~l~~~~~iilV~~K~Dl~~~~e-  172 (301)
T 2qnr_A           98 TIISYIDEQFERYLHDESGLNRRHIIDNRVHCCFYFISPFG-HGLKPLDVA---FMKAIHNKVNIVPVIAKADTLTLKE-  172 (301)
T ss_dssp             THHHHHHHHHHHHHHHHTSSCCTTCCCCCCCEEEEEECSSS-SSCCHHHHH---HHHHHTTTSCEEEEECCGGGSCHHH-
T ss_pred             HHHHHHHHHHHHHHHHhCHHhhhhhhhhhhhheeeeecCcc-cCCCHHHHH---HHHHHHhcCCEEEEEEeCCCCCHHH-
Confidence            3322       2211             2334455444332 133333223   3333334689999999999975332 


Q ss_pred             ccCCCCCCcccHHHHHHHHHHhCCCceEEeccCCCCCHHHHHHHHHHHHcCC
Q 036449          129 FIDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQQNVKAVFDAAIRVVLQP  180 (197)
Q Consensus       129 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~l~~~i~~~~~~~  180 (197)
                             .....++++++++.+++ +++++||+++ +++++|..+.+.+...
T Consensus       173 -------~~~~~~~~~~~~~~~~~-~~~e~Sa~~~-~v~e~f~~l~~~i~~~  215 (301)
T 2qnr_A          173 -------RERLKKRILDEIEEHNI-KIYHLPDAES-DEDEDFKEQTRLLKAS  215 (301)
T ss_dssp             -------HHHHHHHHHHHHHHTTC-CCCCCC----------CHHHHHHHHTT
T ss_pred             -------HHHHHHHHHHHHHHcCC-eEEecCCccc-cccHHHHHHHHHhhcC
Confidence                   01234677888888987 8999999999 9999999999988654

>2xex_A Elongation factor G; GTPase, translation, biosynthetic protein; 1.90A {Staphylococcus aureus}

Probab=99.77  E-value=1.3e-17  Score=136.64  Aligned_cols=117  Identities=18%  Similarity=0.186  Sum_probs=83.7

Q ss_pred             CCceeEEEEEcCCCCCHHHHHHHHhh--CCCCC-----------CC------CCceeeeeeEEEEECCeEEEEEEEeCCC
Q 036449            3 ASRFIKCVTVGDGAVGKTCLLISYTS--NTFPT-----------DY------VPTVFDNFSANVVVNGSTVNLGLWDTAG   63 (197)
Q Consensus         3 ~~~~~~i~v~G~~~~GKstli~~~~~--~~~~~-----------~~------~~~~~~~~~~~~~~~~~~~~~~i~D~~G   63 (197)
                      ..+..+|+++|++|+|||||+++++.  +.+..           ++      ..++.......+.+.+  +.+++|||||
T Consensus         7 ~~~~~~I~IvG~~~aGKSTL~~~Ll~~~~~~~~~g~v~~~~~~~D~~~~e~~~giTi~~~~~~~~~~~--~~i~liDTPG   84 (693)
T 2xex_A            7 LEKTRNIGIMAHIDAGKTTTTERILYYTGRIHKIGETHEGASQMDWMEQEQDRGITITSAATTAAWEG--HRVNIIDTPG   84 (693)
T ss_dssp             STTEEEEEEECCGGGTHHHHHHHHHHHHSSCC-------------------------CCSEEEEEETT--EEEEEECCCC
T ss_pred             cccceEEEEECCCCCCHHHHHHHHHHhcCCccccccccCCceecccchhhhhcCceEeeeeEEEEECC--eeEEEEECcC
Confidence            35678999999999999999999985  22211           00      0001011112233444  6788999999


Q ss_pred             ccccccccccCcCCCcEEEEEEeCCCchhHHHHHHHHHHHHhhhCCCCCEEEEeeCCcccCC
Q 036449           64 QEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLRDD  125 (197)
Q Consensus        64 ~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~~~ivv~nK~D~~~~  125 (197)
                      +..|...+..++..+|++|+|+|++++.+.+.. ..|. .+...  +.|+++|+||+|+...
T Consensus        85 ~~df~~~~~~~l~~aD~~llVvDa~~g~~~~~~-~~~~-~~~~~--~~p~ilviNK~Dl~~~  142 (693)
T 2xex_A           85 HVDFTVEVERSLRVLDGAVTVLDAQSGVEPQTE-TVWR-QATTY--GVPRIVFVNKMDKLGA  142 (693)
T ss_dssp             CSSCCHHHHHHHHHCSEEEEEEETTTBSCHHHH-HHHH-HHHHT--TCCEEEEEECTTSTTC
T ss_pred             CcchHHHHHHHHHHCCEEEEEECCCCCCcHHHH-HHHH-HHHHc--CCCEEEEEECCCcccc
Confidence            999988888888999999999999998777665 3443 34444  7899999999999753

>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*

Probab=99.76  E-value=1.3e-18  Score=130.66  Aligned_cols=114  Identities=19%  Similarity=0.195  Sum_probs=69.5

Q ss_pred             EEEEEEeCCCccc-------------cccccccCcCCCcEEEEEEeCCCch-hHHHHHHHHHHHHhhhCCCCCEEEEeeC
Q 036449           54 VNLGLWDTAGQED-------------YNRLRPLSYRGADVFILAFSLISKA-SYENVSKKWIPELKHYAPGVPIILVGTK  119 (197)
Q Consensus        54 ~~~~i~D~~G~~~-------------~~~~~~~~~~~~~~~i~v~d~~~~~-s~~~~~~~~~~~i~~~~~~~~~ivv~nK  119 (197)
                      ..+.+|||||...             +......++..+|++++|+|.++.. ..... ..+...+...  +.|+++|+||
T Consensus       131 ~~~~lvDTpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~iilvvd~~~~~~~~~~~-~~i~~~~~~~--~~~~i~v~NK  207 (315)
T 1jwy_B          131 VNLTLVDLPGITKVPVGDQPTDIEQQIRRMVMAYIKKQNAIIVAVTPANTDLANSDA-LQLAKEVDPE--GKRTIGVITK  207 (315)
T ss_dssp             CSEEEEECCCCC---------CSHHHHHHHHHHHHHSTTEEEEEEEESSSCSTTCSH-HHHHHHHCSS--CSSEEEEEEC
T ss_pred             CCcEEEECCCCccCCCCCCchhHHHHHHHHHHHHHcCCCeEEEEEEecCcchhhhHH-HHHHHHhCCC--CCcEEEEEcC
Confidence            4688999999753             3344556778999999999974432 11111 2334444433  7899999999


Q ss_pred             CcccCCcccccCCCCCCcccHHHHHHHHHHhCCCceEEeccC---C---CCCHHHHHHHHHHHHcCCC
Q 036449          120 LDLRDDKQFFIDHPGAVPISTAQGEELRKLIGAPAYIECSSK---T---QQNVKAVFDAAIRVVLQPP  181 (197)
Q Consensus       120 ~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~---~---~~~i~~l~~~i~~~~~~~~  181 (197)
                      +|+.....          ...+.........+. .++++++.   +   +.|+.++++.+.+.+...+
T Consensus       208 ~Dl~~~~~----------~~~~~~~~~~~~~~~-~~~~v~~~sa~~~~~~~gv~~l~~~~~~~~~~~~  264 (315)
T 1jwy_B          208 LDLMDKGT----------DAMEVLTGRVIPLTL-GFIGVINRSQEDIIAKKSIRESLKSEILYFKNHP  264 (315)
T ss_dssp             TTSSCSSC----------CCHHHHTTSSSCCTT-CEEECCCCCHHHHSSSCCHHHHHHHHHHHHHTCT
T ss_pred             cccCCcch----------HHHHHHhCCCccCCC-CeEEEecCChhhhccCCCHHHHHHHHHHHHhCCC
Confidence            99975431          111111110001112 56666554   4   6889999999988876543

>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*

Probab=99.76  E-value=2.9e-19  Score=136.48  Aligned_cols=155  Identities=19%  Similarity=0.175  Sum_probs=98.5

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHhhCCCCCCCCCceeee---------------e---------------------------
Q 036449            6 FIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDN---------------F---------------------------   43 (197)
Q Consensus         6 ~~~i~v~G~~~~GKstli~~~~~~~~~~~~~~~~~~~---------------~---------------------------   43 (197)
                      ..+|+|+|.+|||||||++++.+..+......+....               +                           
T Consensus        34 lp~I~vvG~~~sGKSSLln~l~g~~~lp~~~~~vT~~p~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~  113 (360)
T 3t34_A           34 LPAIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLQKIDDGTREYAEFLHLPRKKFTDFAAVRKEIQDETDR  113 (360)
T ss_dssp             CCEEEEECBTTSSHHHHHHHHHTSCCSCCCSSSCCCSCEEEEEEECSSCSCCEEEETTSTTCCBSCHHHHHHHHHHHHHH
T ss_pred             CCEEEEECCCCCcHHHHHHHHhCCCcCCCCCCcccCcceEEEEecCCCcccceeeeecCCCcccCCHHHHHHHHHHHHHH
Confidence            4589999999999999999999977632222111000               0                           


Q ss_pred             -----------eEEEEE-CCeEEEEEEEeCCCcccc-------------ccccccCcCCCcEEEEEEeCCCchhHHHHHH
Q 036449           44 -----------SANVVV-NGSTVNLGLWDTAGQEDY-------------NRLRPLSYRGADVFILAFSLISKASYENVSK   98 (197)
Q Consensus        44 -----------~~~~~~-~~~~~~~~i~D~~G~~~~-------------~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~   98 (197)
                                 .....+ ......+.+|||||...+             ..+...++.++|++|+|+|.++.....   .
T Consensus       114 ~~g~~~~~s~~~i~l~i~~~~~~~l~lvDtPG~~~~~~~~q~~~~~~~~~~~~~~~i~~~d~iilvv~~~~~~~~~---~  190 (360)
T 3t34_A          114 ETGRSKAISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVDGQSDSIVKDIENMVRSYIEKPNCIILAISPANQDLAT---S  190 (360)
T ss_dssp             TSCTTCCCCCSCEEEEEEETTSCSEEEEECCCBCSSCCTTCCSSHHHHHHHHHHHHHHSSSEEEEEEEETTSCGGG---C
T ss_pred             hcCCCCCcccceEEEEEeCCCCCCeEEEECCCCCcCCcCCCchhHHHHHHHHHHHHhhcCCeEEEEeecccCCcCC---H
Confidence                       000000 111235789999998765             445566788999999999876543222   2


Q ss_pred             HHHHHHhhhC-CCCCEEEEeeCCcccCCcccccCCCCCCcccHHHHHHHHHHhCCCceEEeccCCCCCHHHHHHHHH
Q 036449           99 KWIPELKHYA-PGVPIILVGTKLDLRDDKQFFIDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQQNVKAVFDAAI  174 (197)
Q Consensus        99 ~~~~~i~~~~-~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~l~~~i~  174 (197)
                      .|+..+.... .+.|+++|+||+|+.....          ...+.+..+....+. +|+++++.++.++++.+....
T Consensus       191 ~~~~l~~~~~~~~~~~i~V~nK~Dl~~~~~----------~~~~~~~~~~~~~~~-~~~~v~~~s~~~i~~~~~~~~  256 (360)
T 3t34_A          191 DAIKISREVDPSGDRTFGVLTKIDLMDKGT----------DAVEILEGRSFKLKY-PWVGVVNRSQADINKNVDMIA  256 (360)
T ss_dssp             HHHHHHHHSCTTCTTEEEEEECGGGCCTTC----------CSHHHHTTSSSCCSS-CCEEECCCCHHHHHTTCCHHH
T ss_pred             HHHHHHHHhcccCCCEEEEEeCCccCCCcc----------cHHHHHcCccccccC-CeEEEEECChHHhccCCCHHH
Confidence            3333333333 3789999999999976432          223333334445555 799999999888877655533

>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1

Probab=99.76  E-value=1.2e-17  Score=128.82  Aligned_cols=159  Identities=19%  Similarity=0.165  Sum_probs=106.3

Q ss_pred             EEEEEcCCCCCHHHHHHHHhhCCC-CCCCCCceeeeeeEEEEECCeEEEEEEEeCCCcccc----cccccc---CcCCCc
Q 036449            8 KCVTVGDGAVGKTCLLISYTSNTF-PTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQEDY----NRLRPL---SYRGAD   79 (197)
Q Consensus         8 ~i~v~G~~~~GKstli~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~----~~~~~~---~~~~~~   79 (197)
                      .|+++|++|+|||||++.+..... ...+..++.......+.+++ ...+.+||+||....    ..+...   .+..++
T Consensus       159 ~VgLVG~~gAGKSTLL~~Lsg~~~~i~~~~ftTl~p~~G~V~~~~-~~~~~l~DtpGli~~a~~~~~L~~~fl~~~era~  237 (416)
T 1udx_A          159 DVGLVGYPNAGKSSLLAAMTRAHPKIAPYPFTTLSPNLGVVEVSE-EERFTLADIPGIIEGASEGKGLGLEFLRHIARTR  237 (416)
T ss_dssp             SEEEECCGGGCHHHHHHHHCSSCCEECCCTTCSSCCEEEEEECSS-SCEEEEEECCCCCCCGGGSCCSCHHHHHHHTSSS
T ss_pred             EEEEECCCCCcHHHHHHHHHcCCccccCcccceecceeeEEEecC-cceEEEEeccccccchhhhhhhhHHHHHHHHHHH
Confidence            489999999999999999987642 12233332222222233332 245779999997432    122211   245689


Q ss_pred             EEEEEEeCCCchhHHHHHHHHHHHHhhhC---CCCCEEEEeeCCcccCCcccccCCCCCCcccHHHHHHHHHHhCCCceE
Q 036449           80 VFILAFSLISKASYENVSKKWIPELKHYA---PGVPIILVGTKLDLRDDKQFFIDHPGAVPISTAQGEELRKLIGAPAYI  156 (197)
Q Consensus        80 ~~i~v~d~~~~~s~~~~~~~~~~~i~~~~---~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  156 (197)
                      .++.++|++ ...+..+ ..+...+....   .+.|.++|+||+|+... .           ..+...+.....+. +++
T Consensus       238 ~lL~vvDls-~~~~~~l-s~g~~el~~la~aL~~~P~ILVlNKlDl~~~-~-----------~~~~l~~~l~~~g~-~vi  302 (416)
T 1udx_A          238 VLLYVLDAA-DEPLKTL-ETLRKEVGAYDPALLRRPSLVALNKVDLLEE-E-----------AVKALADALAREGL-AVL  302 (416)
T ss_dssp             EEEEEEETT-SCHHHHH-HHHHHHHHHHCHHHHHSCEEEEEECCTTSCH-H-----------HHHHHHHHHHTTTS-CEE
T ss_pred             hhhEEeCCc-cCCHHHH-HHHHHHHHHHhHHhhcCCEEEEEECCChhhH-H-----------HHHHHHHHHHhcCC-eEE
Confidence            999999998 5556665 45555554443   26799999999998642 1           12333444445565 799


Q ss_pred             EeccCCCCCHHHHHHHHHHHHcCCCc
Q 036449          157 ECSSKTQQNVKAVFDAAIRVVLQPPK  182 (197)
Q Consensus       157 ~~sa~~~~~i~~l~~~i~~~~~~~~~  182 (197)
                      .+||+++.|+++++++|.+.+...+.
T Consensus       303 ~iSA~~g~gi~eL~~~i~~~l~~~~~  328 (416)
T 1udx_A          303 PVSALTGAGLPALKEALHALVRSTPP  328 (416)
T ss_dssp             ECCTTTCTTHHHHHHHHHHHHHTSCC
T ss_pred             EEECCCccCHHHHHHHHHHHHHhccc
Confidence            99999999999999999999877654

>2rdo_7 EF-G, elongation factor G; elongation factor G, EF-G, RRF, GDPNP, 50S subunit, cryo-EM, REAL-space refinement, ribonucleoprotein; 9.10A {Escherichia coli} PDB: 3j0e_H

Probab=99.76  E-value=3.5e-17  Score=134.23  Aligned_cols=117  Identities=16%  Similarity=0.139  Sum_probs=82.3

Q ss_pred             CceeEEEEEcCCCCCHHHHHHHHhhC--CCCCC------------------CCCceeeeeeEEEEEC-----CeEEEEEE
Q 036449            4 SRFIKCVTVGDGAVGKTCLLISYTSN--TFPTD------------------YVPTVFDNFSANVVVN-----GSTVNLGL   58 (197)
Q Consensus         4 ~~~~~i~v~G~~~~GKstli~~~~~~--~~~~~------------------~~~~~~~~~~~~~~~~-----~~~~~~~i   58 (197)
                      .+..+|+++|+.|+|||||+++++..  .+...                  ...|.... ...+.+.     +..+.+++
T Consensus         8 ~~~~~I~IiG~~~~GKTTL~~~Ll~~~g~~~~~g~v~~g~~~~D~~~~E~~rgiTi~~~-~~~~~~~~~~~~~~~~~i~l   86 (704)
T 2rdo_7            8 ARYRNIGISAHIDAGKTTTTERILFYTGVNHKIGEVHDGAATMDWMEQEQERGITITSA-ATTAFWSGMAKQYEPHRINI   86 (704)
T ss_pred             ccccEEEEECCCCCCHHHHHHHHHHhcCCcccccccCCCceeecChhhHHhcCceeeec-eEEEEECCccccCCceeEEE
Confidence            56789999999999999999999753  12110                  00011100 1112222     23478999


Q ss_pred             EeCCCccccccccccCcCCCcEEEEEEeCCCchhHHHHHHHHHHHHhhhCCCCCEEEEeeCCcccCC
Q 036449           59 WDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLRDD  125 (197)
Q Consensus        59 ~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~~~ivv~nK~D~~~~  125 (197)
                      |||||+.+|...+..++..+|++|+|+|+++....+.. ..| ......  +.|+++|+||+|+...
T Consensus        87 iDTPG~~df~~~~~~~l~~aD~aIlVvDa~~gv~~qt~-~~~-~~~~~~--~ip~ilviNKiD~~~~  149 (704)
T 2rdo_7           87 IDTPGHVDFTIEVERSMRVLDGAVMVYCAVGGVQPQSE-TVW-RQANKY--KVPRIAFVNKMDRMGA  149 (704)
T ss_pred             EeCCCccchHHHHHHHHHHCCEEEEEEeCCCCCcHHHH-HHH-HHHHHc--CCCEEEEEeCCCcccc
Confidence            99999999988888889999999999999988665544 333 333333  7999999999998653

>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}

Probab=99.75  E-value=5.2e-18  Score=130.97  Aligned_cols=157  Identities=15%  Similarity=0.115  Sum_probs=82.1

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHhhCCCC-CCC-------CCceee-eeeEEEEECCeEEEEEEEeCCCccccc-------c
Q 036449            6 FIKCVTVGDGAVGKTCLLISYTSNTFP-TDY-------VPTVFD-NFSANVVVNGSTVNLGLWDTAGQEDYN-------R   69 (197)
Q Consensus         6 ~~~i~v~G~~~~GKstli~~~~~~~~~-~~~-------~~~~~~-~~~~~~~~~~~~~~~~i~D~~G~~~~~-------~   69 (197)
                      .++|+++|++|+|||||++.+.+..+. ..+       .++... .........+....+++||++|...+.       .
T Consensus        31 sf~I~lvG~sGaGKSTLln~L~g~~~~~~~~~~~~~~~~~t~~~~~i~~v~q~~~~~~~Ltv~Dt~g~~~~~~~~~~~~~  110 (418)
T 2qag_C           31 EFTLMVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVEQSKVLIKEGGVQLLLTIVDTPGFGDAVDNSNCWQP  110 (418)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHTTCCCCCCCCCSCC-----CCEEEEEECC------CEEEEEEECC-----------CHH
T ss_pred             CEEEEEECCCCCcHHHHHHHHhCCCCCCCCCCCcccCCccceeeeeEEEEEecCCcccceeeeechhhhhhccchhhHHH
Confidence            478999999999999999999987653 211       111111 111111122333578999999975431       1


Q ss_pred             ------------------ccccCcCCCcEEEEEEeCCCc-hhHHHHHHHHHHHHhhhCCCCCEEEEeeCCcccCCccccc
Q 036449           70 ------------------LRPLSYRGADVFILAFSLISK-ASYENVSKKWIPELKHYAPGVPIILVGTKLDLRDDKQFFI  130 (197)
Q Consensus        70 ------------------~~~~~~~~~~~~i~v~d~~~~-~s~~~~~~~~~~~i~~~~~~~~~ivv~nK~D~~~~~~~~~  130 (197)
                                        +...++.++++.+++|+.... .++......|+..+.   .+.|+|+|+||+|+.....   
T Consensus       111 i~~~i~~~~~~~l~qr~~IaRal~~d~~~~vlL~ldePt~~~L~~~d~~~lk~L~---~~v~iIlVinK~Dll~~~e---  184 (418)
T 2qag_C          111 VIDYIDSKFEDYLNAESRVNRRQMPDNRVQCCLYFIAPSGHGLKPLDIEFMKRLH---EKVNIIPLIAKADTLTPEE---  184 (418)
T ss_dssp             HHHHHHHHHHHHTTTSCC-CCCCCCCC-CCEEEEECCC-CCSCCHHHHHHHHHHT---TTSEEEEEEESTTSSCHHH---
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhccCCCeeEEEEEecCcccCCCHHHHHHHHHHh---ccCcEEEEEEcccCccHHH---
Confidence                              123355666655555555432 344444335666664   3689999999999965433   


Q ss_pred             CCCCCCcccH--HHHHHHHHHhCCCceEEeccCCCCCHHHHHHHHHHH
Q 036449          131 DHPGAVPIST--AQGEELRKLIGAPAYIECSSKTQQNVKAVFDAAIRV  176 (197)
Q Consensus       131 ~~~~~~~~~~--~~~~~~~~~~~~~~~~~~sa~~~~~i~~l~~~i~~~  176 (197)
                             +..  ..+..++...+. +++++|++++.++.++|..+...
T Consensus       185 -------v~~~k~~i~~~~~~~~i-~~~~~sa~~~~~v~~~~~~l~~~  224 (418)
T 2qag_C          185 -------CQQFKKQIMKEIQEHKI-KIYEFPETDDEEENKLVKKIKDR  224 (418)
T ss_dssp             -------HHHHHHHHHHHHHHHTC-CCCCCC-----------------
T ss_pred             -------HHHHHHHHHHHHHHcCC-eEEeCCCCCCcCHHHHHHHHHhh
Confidence                   333  567778888887 89999999999999988887764

>1wxq_A GTP-binding protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.60A {Pyrococcus horikoshii} SCOP: c.37.1.8 d.15.10.2

Probab=99.74  E-value=1.4e-17  Score=128.16  Aligned_cols=84  Identities=21%  Similarity=0.203  Sum_probs=47.4

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhhCCCC-CCCCCceeeeeeEE--E-------------------EECC-eEEEEEEEeCCC
Q 036449            7 IKCVTVGDGAVGKTCLLISYTSNTFP-TDYVPTVFDNFSAN--V-------------------VVNG-STVNLGLWDTAG   63 (197)
Q Consensus         7 ~~i~v~G~~~~GKstli~~~~~~~~~-~~~~~~~~~~~~~~--~-------------------~~~~-~~~~~~i~D~~G   63 (197)
                      ++|+++|.+|||||||++++.+.... ..++.++.......  .                   .+++ ..+.+++|||||
T Consensus         1 ~kI~ivG~pnvGKSTL~n~L~~~~~~~~~~p~tT~~~~~g~~~~~~~~~~~~l~~~~~p~~~~~~~~~~~~~i~lvDtpG   80 (397)
T 1wxq_A            1 MEIGVVGKPNVGKSTFFSAATLVDVEIANYPFTTIEANVGVTYAITDHPCKELGCSPNPQNYEYRNGLALIPVKMVDVAG   80 (397)
T ss_dssp             CEEEEEECTTSSHHHHHHHHHC--------------CCEEEEEEEEECSCSSSCCSCCCSSSCEETTEEEEEEEEEECC-
T ss_pred             CEEEEECCCCCCHHHHHHHHHCCCCcccCCCCcccCCceEEEeeccCCchHHhhhhcccccccccCCcceEEEEEEECCC
Confidence            58999999999999999999987632 23333332111111  1                   1222 247799999999


Q ss_pred             ccc----cccccc---cCcCCCcEEEEEEeCCCc
Q 036449           64 QED----YNRLRP---LSYRGADVFILAFSLISK   90 (197)
Q Consensus        64 ~~~----~~~~~~---~~~~~~~~~i~v~d~~~~   90 (197)
                      ...    ...+..   ..++.+|++++|+|+++.
T Consensus        81 ~~~~a~~~~~l~~~~l~~i~~aD~il~VvD~~~~  114 (397)
T 1wxq_A           81 LVPGAHEGRGLGNKFLDDLRMASALIHVVDATGK  114 (397)
T ss_dssp             --------------CCCSSTTCSEEEEEEETTCC
T ss_pred             cccchhhhhhHHHHHHHHHhcCCEEEEEEecccc
Confidence            753    222222   457899999999999875

>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}

Probab=99.72  E-value=5e-17  Score=115.92  Aligned_cols=157  Identities=16%  Similarity=0.089  Sum_probs=94.2

Q ss_pred             CceeEEEEEcCCCCCHHHHHHHHhhCCCCCCCCCceeeee-------------eEEEEECC------------------e
Q 036449            4 SRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNF-------------SANVVVNG------------------S   52 (197)
Q Consensus         4 ~~~~~i~v~G~~~~GKstli~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~~------------------~   52 (197)
                      .+..+|+++|.+|+|||||++++.................             .....++.                  .
T Consensus        28 ~~~~~i~i~G~~g~GKTTl~~~l~~~~~~~~~~~~i~~d~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  107 (221)
T 2wsm_A           28 SGTVAVNIMGAIGSGKTLLIERTIERIGNEVKIGAMLGDVVSKADYERVRRFGIKAEAISTGKECHLDAHMIYHRLKKFS  107 (221)
T ss_dssp             HTCEEEEEEECTTSCHHHHHHHHHHHHTTTSCEEEEECSCCCHHHHHHHHTTTCEEEECCCTTCSSCCHHHHHTTGGGGT
T ss_pred             cCceEEEEEcCCCCCHHHHHHHHHHHhccCCeEEEEecCCCCchhHHHHHhCCCcEEEecCCceeecccHHHHHHHHhcC
Confidence            3567899999999999999999886422111111100000             00011110                  1


Q ss_pred             EEEEEEEeCCCccccccccccCcCCCcEEEEEEeCCCchhHHHHHHHHHHHHhhhCCCCCEEEEeeCCcccCCcccccCC
Q 036449           53 TVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLRDDKQFFIDH  132 (197)
Q Consensus        53 ~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~~~ivv~nK~D~~~~~~~~~~~  132 (197)
                      ...+.+|||+|+......   +....+.+++|+|+++.....   ..+...   .  +.|+++|+||+|+.+...     
T Consensus       108 ~~d~iiidt~G~~~~~~~---~~~~~~~~i~vvd~~~~~~~~---~~~~~~---~--~~~~iiv~NK~Dl~~~~~-----  171 (221)
T 2wsm_A          108 DCDLLLIENVGNLICPVD---FDLGENYRVVMVSVTEGDDVV---EKHPEI---F--RVADLIVINKVALAEAVG-----  171 (221)
T ss_dssp             TCSEEEEEEEEBSSGGGG---CCCSCSEEEEEEEGGGCTTHH---HHCHHH---H--HTCSEEEEECGGGHHHHT-----
T ss_pred             CCCEEEEeCCCCCCCCch---hccccCcEEEEEeCCCcchhh---hhhhhh---h--hcCCEEEEecccCCcchh-----
Confidence            245679999985111111   112467899999998764321   122222   1  478999999999964321     


Q ss_pred             CCCCcccHHHHHHHHHHhC-CCceEEeccCCCCCHHHHHHHHHHHHcCCC
Q 036449          133 PGAVPISTAQGEELRKLIG-APAYIECSSKTQQNVKAVFDAAIRVVLQPP  181 (197)
Q Consensus       133 ~~~~~~~~~~~~~~~~~~~-~~~~~~~sa~~~~~i~~l~~~i~~~~~~~~  181 (197)
                           ...++.....+..+ ..+++++||++|.|++++|++|.+.+....
T Consensus       172 -----~~~~~~~~~~~~~~~~~~i~~~Sa~~g~gi~~l~~~l~~~~~~~~  216 (221)
T 2wsm_A          172 -----ADVEKMKADAKLINPRAKIIEMDLKTGKGFEEWIDFLRGILNVHS  216 (221)
T ss_dssp             -----CCHHHHHHHHHHHCTTSEEEECBTTTTBTHHHHHHHHHHHHC---
T ss_pred             -----hHHHHHHHHHHHhCCCCeEEEeecCCCCCHHHHHHHHHHHHHHHH
Confidence                 23444555555543 237999999999999999999999886653

>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*

Probab=99.69  E-value=5.3e-18  Score=121.40  Aligned_cols=155  Identities=18%  Similarity=0.116  Sum_probs=92.5

Q ss_pred             CceeEEEEEcCCCCCHHHHHHHHhhCCCCCCCCCceeeeee-------------EEEEEC-CeE----------------
Q 036449            4 SRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFS-------------ANVVVN-GST----------------   53 (197)
Q Consensus         4 ~~~~~i~v~G~~~~GKstli~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~-~~~----------------   53 (197)
                      .+.++|+++|.+|||||||++++....+...+.++....+.             ....++ +..                
T Consensus        36 ~~~~~i~ivG~~gvGKTtl~~~l~~~~~~~~~~~~i~~d~~~~~d~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~  115 (226)
T 2hf9_A           36 HGVVAFDFMGAIGSGKTLLIEKLIDNLKDKYKIACIAGDVIAKFDAERMEKHGAKVVPLNTGKECHLDAHLVGHALEDLN  115 (226)
T ss_dssp             TTCEEEEEEESTTSSHHHHHHHHHHHHTTTCCEEEEEEETTTHHHHHHHHTTTCEEEEEECTTCSSCCHHHHHHHHTTSC
T ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHHHhccCCeEEEEECCCCCCccHHHHHhcCCcEEEecCCceEeccHHHHHHHHHHHh
Confidence            35689999999999999999999977655444444432221             122221 111                


Q ss_pred             ---EEEEEEeCCCccccccccccCcCCCcEEEEEEeCCCchhHHHHHHHHHHHHhhhCCCCCEEEEeeCCcccCCccccc
Q 036449           54 ---VNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLRDDKQFFI  130 (197)
Q Consensus        54 ---~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~~~ivv~nK~D~~~~~~~~~  130 (197)
                         ..+.++|++|.-...   ..+-...+..+.++|.........   .+...+     +.|.++|+||+|+.+...   
T Consensus       116 ~~~~d~~~id~~g~i~~~---~s~~~~~~~~~~v~~~~~~~~~~~---~~~~~~-----~~~~iiv~NK~Dl~~~~~---  181 (226)
T 2hf9_A          116 LDEIDLLFIENVGNLICP---ADFDLGTHKRIVVISTTEGDDTIE---KHPGIM-----KTADLIVINKIDLADAVG---  181 (226)
T ss_dssp             GGGCSEEEEECCSCSSGG---GGCCCSCSEEEEEEEGGGCTTTTT---TCHHHH-----TTCSEEEEECGGGHHHHT---
T ss_pred             cCCCCEEEEeCCCCccCc---chhhhccCcEEEEEecCcchhhHh---hhhhHh-----hcCCEEEEeccccCchhH---
Confidence               124455665521100   011122345667777543222111   111111     468899999999965321   


Q ss_pred             CCCCCCcccHHHHHHHHHHhC-CCceEEeccCCCCCHHHHHHHHHHHHcC
Q 036449          131 DHPGAVPISTAQGEELRKLIG-APAYIECSSKTQQNVKAVFDAAIRVVLQ  179 (197)
Q Consensus       131 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~sa~~~~~i~~l~~~i~~~~~~  179 (197)
                             ...++...+++..+ ..+++++||++|.|++++|++|.+.+..
T Consensus       182 -------~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~~~~  224 (226)
T 2hf9_A          182 -------ADIKKMENDAKRINPDAEVVLLSLKTMEGFDKVLEFIEKSVKE  224 (226)
T ss_dssp             -------CCHHHHHHHHHHHCTTSEEEECCTTTCTTHHHHHHHHHHHHHH
T ss_pred             -------HHHHHHHHHHHHhCCCCeEEEEEecCCCCHHHHHHHHHHHHHh
Confidence                   23455566666543 2389999999999999999999987643

>2x2e_A Dynamin-1; nitration, hydrolase, membrane fission, nucleotide-binding, endocytosis, motor protein; HET: GDP; 2.00A {Homo sapiens} PDB: 2x2f_A* 3zyc_A* 3zys_A

Probab=99.69  E-value=3.4e-18  Score=130.16  Aligned_cols=158  Identities=22%  Similarity=0.197  Sum_probs=92.2

Q ss_pred             ceeEEEEEcCCCCCHHHHHHHHhhCCCCCCC------CCcee--------------------eee---------------
Q 036449            5 RFIKCVTVGDGAVGKTCLLISYTSNTFPTDY------VPTVF--------------------DNF---------------   43 (197)
Q Consensus         5 ~~~~i~v~G~~~~GKstli~~~~~~~~~~~~------~~~~~--------------------~~~---------------   43 (197)
                      ..++|+|+|.+++|||||++++.+..+.+..      .|+..                    ..+               
T Consensus        30 ~~~~I~vvG~~~~GKSSLln~L~g~~~~p~~~~~~t~~p~~~~~~~~~~~~~~~~~~~~~~~tt~~~v~~~i~~~~~~i~  109 (353)
T 2x2e_A           30 DLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNATTEYAEFLHCKGKKFTDFEEVRLEIEAETDRVT  109 (353)
T ss_dssp             CCCEEEEECBTTSSHHHHHHTTTTSCCSCCCSSSCCCSCEEEEEEECSSCEEEETTSTTCCBCCHHHHHHHHHHHHHHHH
T ss_pred             CCCeEEEECCCCCCHHHHHHHHhCCCcCCCCCCcccccceEEEEEcCCccceeeeecCCcccCCHHHHHHHHHHHHHHhc
Confidence            3579999999999999999999988763221      12200                    000               


Q ss_pred             ---------eEEEEEC-CeEEEEEEEeCCCccc-------------cccccccCcCCCc-EEEEEEeCCCchhHHHHHHH
Q 036449           44 ---------SANVVVN-GSTVNLGLWDTAGQED-------------YNRLRPLSYRGAD-VFILAFSLISKASYENVSKK   99 (197)
Q Consensus        44 ---------~~~~~~~-~~~~~~~i~D~~G~~~-------------~~~~~~~~~~~~~-~~i~v~d~~~~~s~~~~~~~   99 (197)
                               ...+.+. .....+.+|||||...             +..+...++..++ ++++|.|.+......+. ..
T Consensus       110 g~~~gi~~~~~~~~i~~~~~~~l~lvDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiL~v~~a~~~~~~~~~-~~  188 (353)
T 2x2e_A          110 GTNKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDA-LK  188 (353)
T ss_dssp             TTTTCCCCCCEEEEEEETTCCSEEEEECCCBCSSCCTTCCTTHHHHHHHHHHHHHTSTTEEEEEEEETTSCGGGCHH-HH
T ss_pred             ccCCCcccCceEEEEecCCCCCcEEEECCCCCCCccCCCchhHHHHHHHHHHHHHcCCCeEEEEEecCCCccchhHH-HH
Confidence                     0001111 1125688999999632             3334445565555 55556676543322222 22


Q ss_pred             HHHHHhhhCCCCCEEEEeeCCcccCCcccccCCCCCCcccHHHHH--HHHHHhCCCceEEeccCCCCCHHHHHHHHHH
Q 036449          100 WIPELKHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPISTAQGE--ELRKLIGAPAYIECSSKTQQNVKAVFDAAIR  175 (197)
Q Consensus       100 ~~~~i~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~sa~~~~~i~~l~~~i~~  175 (197)
                      +...+..  .+.|+++|+||+|+.+...          ...+...  .+....+..+++++||+++.|++++++.+.+
T Consensus       189 i~~~~~~--~~~~~i~V~NK~Dl~~~~~----------~~~~~~~~~~~~l~~~~~~v~~~SA~~~~~i~~l~~~l~~  254 (353)
T 2x2e_A          189 VAKEVDP--QGQRTIGVITKLDLMDEGT----------DARDVLENKLLPLRRGYIGVVNRSQKDIDGKKDITAALAA  254 (353)
T ss_dssp             HHHHHCT--TCTTEEEEEECGGGSCTTC----------CCHHHHTTCSSCCTTCEEECCCCCHHHHHTTCCHHHHHHH
T ss_pred             HHHHhCc--CCCceEEEeccccccCcch----------hHHHHHhCCcccccCCceEEEeCCcccccccccHHHHHHH
Confidence            3444433  3789999999999975321          0011111  0111123235678999999999999999876

>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*

Probab=99.68  E-value=4.6e-17  Score=124.01  Aligned_cols=104  Identities=18%  Similarity=0.157  Sum_probs=68.9

Q ss_pred             EEEEEEeCCCccccccccccCcCCCcEEEEEEeCCCchhHHHHHHHHHHHHhhhCCCCCEEEEeeCCcccCCcccccCCC
Q 036449           54 VNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLRDDKQFFIDHP  133 (197)
Q Consensus        54 ~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~~~ivv~nK~D~~~~~~~~~~~~  133 (197)
                      +.+.+|||||...   .....+..+|++++|+|.+..+..+.+ .       ....+.|+++|+||+|+.+...      
T Consensus       172 ~~~iiiDTpGi~~---~~~~~~~~aD~vl~V~d~~~~~~~~~l-~-------~~~~~~p~ivVlNK~Dl~~~~~------  234 (355)
T 3p32_A          172 FDVILIETVGVGQ---SEVAVANMVDTFVLLTLARTGDQLQGI-K-------KGVLELADIVVVNKADGEHHKE------  234 (355)
T ss_dssp             CCEEEEEECSCSS---HHHHHHTTCSEEEEEEESSTTCTTTTC-C-------TTSGGGCSEEEEECCCGGGHHH------
T ss_pred             CCEEEEeCCCCCc---HHHHHHHhCCEEEEEECCCCCccHHHH-H-------HhHhhcCCEEEEECCCCcChhH------
Confidence            5678999999432   122235789999999998776554333 1       1112468999999999965321      


Q ss_pred             CCCcccHHHHHHHHHH---hC------CCceEEeccCCCCCHHHHHHHHHHHHcC
Q 036449          134 GAVPISTAQGEELRKL---IG------APAYIECSSKTQQNVKAVFDAAIRVVLQ  179 (197)
Q Consensus       134 ~~~~~~~~~~~~~~~~---~~------~~~~~~~sa~~~~~i~~l~~~i~~~~~~  179 (197)
                          . ......+...   .+      ..+++++||++|.|+++++++|.+.+..
T Consensus       235 ----~-~~~~~~l~~~l~~~~~~~~~~~~~vi~iSA~~g~Gi~~L~~~i~~~~~~  284 (355)
T 3p32_A          235 ----A-RLAARELSAAIRLIYPREALWRPPVLTMSAVEGRGLAELWDTVERHRQV  284 (355)
T ss_dssp             ----H-HHHHHHHHHHHHHHSTTCCSCCCCEEEEBGGGTBSHHHHHHHHHHHHHH
T ss_pred             ----H-HHHHHHHHHHHhhccccccCCCCceEEEEcCCCCCHHHHHHHHHHHHHH
Confidence                1 1111222222   21      1379999999999999999999987754

>1n0u_A EF-2, elongation factor 2; G-protein, CIS-proline, translation; HET: SO1; 2.12A {Saccharomyces cerevisiae} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1n0v_C 1s1h_T 2e1r_A* 2npf_A* 2p8w_T* 3dny_T 3b82_A* 1zm2_A* 1zm3_A* 1zm4_A* 1zm9_A* 2p8x_T* 2p8y_T* 2p8z_T* 2zit_A* 1u2r_A* 3b78_A* 3b8h_A*

Probab=99.67  E-value=1.5e-16  Score=132.75  Aligned_cols=118  Identities=15%  Similarity=0.127  Sum_probs=85.1

Q ss_pred             CCceeEEEEEcCCCCCHHHHHHHHhhCC--CCCC----------------CCCceeeee-eEEEE------------ECC
Q 036449            3 ASRFIKCVTVGDGAVGKTCLLISYTSNT--FPTD----------------YVPTVFDNF-SANVV------------VNG   51 (197)
Q Consensus         3 ~~~~~~i~v~G~~~~GKstli~~~~~~~--~~~~----------------~~~~~~~~~-~~~~~------------~~~   51 (197)
                      ..+..+|+++|+.|+|||||+++++...  ....                ...|..... .....            .++
T Consensus        16 ~~~~rnI~IiG~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~D~~~~E~~rgiTI~~~~~~~~~~~~~~~~~~i~~~~~~   95 (842)
T 1n0u_A           16 VTNVRNMSVIAHVDHGKSTLTDSLVQRAGIISAAKAGEARFTDTRKDEQERGITIKSTAISLYSEMSDEDVKEIKQKTDG   95 (842)
T ss_dssp             GGGEEEEEEECCGGGTHHHHHHHHHHHHBCCBC------------------CCCBCCCEEEEEEECCHHHHHHCSSCCCS
T ss_pred             cccccEEEEECCCCCCHHHHHHHHHHhcCCcccccCCCceeecCchhhhhcceeEeeceeEEEecccccccccccccccC
Confidence            3567899999999999999999998641  1100                001111111 11111            134


Q ss_pred             eEEEEEEEeCCCccccccccccCcCCCcEEEEEEeCCCchhHHHHHHHHHHHHhhhCCCCCEEEEeeCCcccC
Q 036449           52 STVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLRD  124 (197)
Q Consensus        52 ~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~~~ivv~nK~D~~~  124 (197)
                      ..+.+++|||||+.+|...+..+++.+|++|+|+|++++.+++.. ..|.... .  .+.|+++|+||+|+..
T Consensus        96 ~~~~i~liDTPG~~df~~~~~~~l~~aD~ailVvDa~~g~~~qt~-~~~~~~~-~--~~~p~ilviNK~D~~~  164 (842)
T 1n0u_A           96 NSFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDTIEGVCVQTE-TVLRQAL-G--ERIKPVVVINKVDRAL  164 (842)
T ss_dssp             SEEEEEEECCCCCCSSCHHHHHHHHTCSEEEEEEETTTBSCHHHH-HHHHHHH-H--TTCEEEEEEECHHHHH
T ss_pred             CCceEEEEECcCchhhHHHHHHHHHhCCEEEEEEeCCCCCCHHHH-HHHHHHH-H--cCCCeEEEEECCCcch
Confidence            478899999999999999988999999999999999999888776 4454433 2  2689999999999863

>1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2

Probab=99.66  E-value=5.6e-15  Score=111.81  Aligned_cols=83  Identities=20%  Similarity=0.213  Sum_probs=55.2

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhhCCCC-CCCCCceeeeeeEEEEECCe---------------EEEEEEEeCCCccccc--
Q 036449            7 IKCVTVGDGAVGKTCLLISYTSNTFP-TDYVPTVFDNFSANVVVNGS---------------TVNLGLWDTAGQEDYN--   68 (197)
Q Consensus         7 ~~i~v~G~~~~GKstli~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~---------------~~~~~i~D~~G~~~~~--   68 (197)
                      ++|+++|.+|+|||||++++.+..+. .+++.++.......+.+++.               ...+++||+||+.++.  
T Consensus         3 ~kI~IVG~pnvGKSTL~n~Lt~~~~~v~~~p~tTi~p~~g~v~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~~a~~   82 (363)
T 1jal_A            3 FKCGIVGLPNVGKSTLFNALTKAGIEAANYPFCTIEPNTGVVPMPDPRLDALAEIVKPERILPTTMEFVDIAGLVAGASK   82 (363)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHTC------CCCCCCCCSSEEECCCHHHHHHHHHHCCSEEECCEEEEEECCSCCTTHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHCCCCcccCCCCceECceEEEEecCCcccceeeeeecccceeeeEEEEEECCCCcccccc
Confidence            68999999999999999999987642 33333332211222333332               1468899999987653  


Q ss_pred             --ccccc---CcCCCcEEEEEEeCCC
Q 036449           69 --RLRPL---SYRGADVFILAFSLIS   89 (197)
Q Consensus        69 --~~~~~---~~~~~~~~i~v~d~~~   89 (197)
                        .+...   .++.+|++++|+|+++
T Consensus        83 ~~gl~~~fl~~ir~ad~il~VvD~~~  108 (363)
T 1jal_A           83 GEGLGNKFLANIRETDAIGHVVRCFE  108 (363)
T ss_dssp             HGGGTCCHHHHHHTCSEEEEEEECSC
T ss_pred             cchHHHHHHHHHHhcCeEEEEEecCC
Confidence              23333   3678999999999986

>2qpt_A EH domain-containing protein-2; protein-nucleotide complex, membrane protein, endocytosis; HET: ANP; 3.10A {Mus musculus}

Probab=99.65  E-value=1.8e-16  Score=126.77  Aligned_cols=119  Identities=17%  Similarity=0.140  Sum_probs=78.4

Q ss_pred             CceeEEEEEcCCCCCHHHHHHHHhhCCCC---CCCCCceeeeeeEE----------------------------------
Q 036449            4 SRFIKCVTVGDGAVGKTCLLISYTSNTFP---TDYVPTVFDNFSAN----------------------------------   46 (197)
Q Consensus         4 ~~~~~i~v~G~~~~GKstli~~~~~~~~~---~~~~~~~~~~~~~~----------------------------------   46 (197)
                      ...++|+|+|.+|+|||||++++++..+.   ....+++.......                                  
T Consensus        63 ~~~~~V~vvG~~n~GKSTLIN~Llg~~~~~~~vs~~p~T~~~~~i~~~~~~~i~~g~~l~~~~~~~~~~L~~~g~~~~~~  142 (550)
T 2qpt_A           63 DGKPMVLVAGQYSTGKTSFIQYLLEQEVPGSRVGPEPTTDCFVAVMHGETEGTVPGNALVVDPEKPFRKLNPFGNTFLNR  142 (550)
T ss_dssp             SSCCEEEEEEBTTSCHHHHHHHHHTSCCSSCCCCSSCCCCSEEEEECCSSSEEECCC------------------CCCTT
T ss_pred             cCCcEEEEECCCCCCHHHHHHHHhCCccccCccCCCCccceEEEEEECCcccccCCceeeecCcccHHHHhhhccccccc
Confidence            35689999999999999999999988763   22222221000000                                  


Q ss_pred             ---EEECCe-EEEEEEEeCCCccc-----------cccccccCcCCCcEEEEEEeCCCchhHHHHHHHHHHHHhhhCCCC
Q 036449           47 ---VVVNGS-TVNLGLWDTAGQED-----------YNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGV  111 (197)
Q Consensus        47 ---~~~~~~-~~~~~i~D~~G~~~-----------~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~  111 (197)
                         +.+.+. ...+.+|||||...           |......++..+|++++|+|+++....+.. ..++..+...  +.
T Consensus       143 ~~~~~~~~~ll~~l~lIDTPG~~~~~~~~~~~~~~f~~~~~~~l~~aD~il~VvDa~~~~~~~~~-~~~l~~l~~~--~~  219 (550)
T 2qpt_A          143 FMCAQLPNQVLESISIIDTPGILSGAKQRVSRGYDFPAVLRWFAERVDLIILLFDAHKLEISDEF-SEAIGALRGH--ED  219 (550)
T ss_dssp             EEEEECCCHHHHHCEEEECCCBCC-------CCSCHHHHHHHHHHHCSEEEEEEETTSCCCCHHH-HHHHHHTTTC--GG
T ss_pred             ceEEeccccccCCEEEEECcCCCCcchhHHHHHhhHHHHHHHHHHhCCEEEEEEeCCcCCCCHHH-HHHHHHHHhc--CC
Confidence               000000 02478999999764           334445567789999999999885444444 4566665543  68


Q ss_pred             CEEEEeeCCcccCC
Q 036449          112 PIILVGTKLDLRDD  125 (197)
Q Consensus       112 ~~ivv~nK~D~~~~  125 (197)
                      |+++|+||+|+...
T Consensus       220 pvilVlNK~Dl~~~  233 (550)
T 2qpt_A          220 KIRVVLNKADMVET  233 (550)
T ss_dssp             GEEEEEECGGGSCH
T ss_pred             CEEEEEECCCccCH
Confidence            99999999999653

>3vqt_A RF-3, peptide chain release factor 3; translation, GTPase; HET: GDP; 1.80A {Desulfovibrio vulgaris} PDB: 3vr1_A*

Probab=99.62  E-value=1.6e-14  Score=115.48  Aligned_cols=114  Identities=14%  Similarity=0.102  Sum_probs=80.3

Q ss_pred             ceeEEEEEcCCCCCHHHHHHHHhhCCCC-----------------CCCCCce---e---eeeeEEEEECCeEEEEEEEeC
Q 036449            5 RFIKCVTVGDGAVGKTCLLISYTSNTFP-----------------TDYVPTV---F---DNFSANVVVNGSTVNLGLWDT   61 (197)
Q Consensus         5 ~~~~i~v~G~~~~GKstli~~~~~~~~~-----------------~~~~~~~---~---~~~~~~~~~~~~~~~~~i~D~   61 (197)
                      +.=+|+++|+.++|||||..+++...-.                 .++.+..   +   ......+.+.+  +.++|+||
T Consensus        30 r~RNiaIiaHvdaGKTTLtE~lL~~tG~i~~~G~V~~~~~~~~~~~D~~~~EreRGITI~s~~~~~~~~~--~~iNlIDT  107 (548)
T 3vqt_A           30 RRRTFAIISHPDAGKTTLTEKLLLFGGAIQMAGSVKARKAARHATSDWMAMERERGISVTTSVMQFPYRD--RVVNLLDT  107 (548)
T ss_dssp             TEEEEEEECCTTSSHHHHHHHHHHHTTCHHHHHHHHHC--------------------CTTTEEEEEETT--EEEEEECC
T ss_pred             ccceEEEEeCCCCCHHHHHHHHHHhcCcccccceeecCccccccccCChHHHHHCCCcEeeceEEEEECC--EEEEEEeC
Confidence            4457999999999999999988632110                 0000000   0   01112334455  67889999


Q ss_pred             CCccccccccccCcCCCcEEEEEEeCCCchhHHHHHHHHHHHHhhhCCCCCEEEEeeCCcccC
Q 036449           62 AGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLRD  124 (197)
Q Consensus        62 ~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~~~ivv~nK~D~~~  124 (197)
                      ||+.+|.......++-+|++|+|+|+..+-..+.. ..| ......  ++|.++++||+|...
T Consensus       108 PGHvDF~~Ev~raL~~~DgAvlVvda~~GV~~qT~-~v~-~~a~~~--~lp~i~fINK~Dr~~  166 (548)
T 3vqt_A          108 PGHQDFSEDTYRVLTAVDSALVVIDAAKGVEAQTR-KLM-DVCRMR--ATPVMTFVNKMDREA  166 (548)
T ss_dssp             CCGGGCSHHHHHHHHSCSEEEEEEETTTBSCHHHH-HHH-HHHHHT--TCCEEEEEECTTSCC
T ss_pred             CCcHHHHHHHHHHHHhcCceEEEeecCCCcccccH-HHH-HHHHHh--CCceEEEEecccchh
Confidence            99999998888889999999999999988666654 344 444444  799999999999864

>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}

Probab=99.62  E-value=1.8e-16  Score=120.35  Aligned_cols=103  Identities=15%  Similarity=0.107  Sum_probs=61.6

Q ss_pred             EEEEEEeCCCccccccccccCcCCCcEEEEEEeCCCchhHHHHHHHHHHHHhhhCCCCCEEEEeeCCcccCCcccccCCC
Q 036449           54 VNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLRDDKQFFIDHP  133 (197)
Q Consensus        54 ~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~~~ivv~nK~D~~~~~~~~~~~~  133 (197)
                      +.+.++||||....   .......+|++++|+|.+++...+.+ .   ..+    -..|.++|+||+|+.+...      
T Consensus       167 ~~~iliDT~Gi~~~---~~~l~~~~d~vl~V~d~~~~~~~~~i-~---~~i----l~~~~ivVlNK~Dl~~~~~------  229 (349)
T 2www_A          167 YDIILIETVGVGQS---EFAVADMVDMFVLLLPPAGGDELQGI-K---RGI----IEMADLVAVTKSDGDLIVP------  229 (349)
T ss_dssp             CSEEEEECCCC--C---HHHHHTTCSEEEEEECCC--------------------CCSCSEEEECCCSGGGHHH------
T ss_pred             CCEEEEECCCcchh---hhhHHhhCCEEEEEEcCCcchhHHHh-H---HHH----HhcCCEEEEeeecCCCchh------
Confidence            45679999995311   12345689999999999876433222 1   111    1457899999999954211      


Q ss_pred             CCCcccHHHHHHHHHHh---------CCCceEEeccCCCCCHHHHHHHHHHHHc
Q 036449          134 GAVPISTAQGEELRKLI---------GAPAYIECSSKTQQNVKAVFDAAIRVVL  178 (197)
Q Consensus       134 ~~~~~~~~~~~~~~~~~---------~~~~~~~~sa~~~~~i~~l~~~i~~~~~  178 (197)
                          . ......+....         ..++++.+||+++.|+++++++|.+.+.
T Consensus       230 ----~-~~~~~~l~~~l~~~~~~a~~~~~~vi~iSA~~g~Gi~~L~~~I~~~~~  278 (349)
T 2www_A          230 ----A-RRIQAEYVSALKLLRKRSQVWKPKVIRISARSGEGISEMWDKMKDFQD  278 (349)
T ss_dssp             ----H-HHHHHHHHHHHTTCC-----CCCEEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred             ----H-HHHHHHHHHHHHhcCccccCCCceEEEEecCCCCCHHHHHHHHHHHHH
Confidence                0 01112222211         1237899999999999999999988764

>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*

Probab=99.62  E-value=4.7e-15  Score=108.34  Aligned_cols=118  Identities=12%  Similarity=-0.041  Sum_probs=69.2

Q ss_pred             EEEEEEeCCCccccccccc------cCcCCCcEEEEEEeCCCchhHHHHHHHH---HHHHhhhCCCCCEEEEeeCCcccC
Q 036449           54 VNLGLWDTAGQEDYNRLRP------LSYRGADVFILAFSLISKASYENVSKKW---IPELKHYAPGVPIILVGTKLDLRD  124 (197)
Q Consensus        54 ~~~~i~D~~G~~~~~~~~~------~~~~~~~~~i~v~d~~~~~s~~~~~~~~---~~~i~~~~~~~~~ivv~nK~D~~~  124 (197)
                      +.+.+|||||+..+.....      ..+.. +++++++|.+...+.......+   ......  .+.|+++|+||+|+..
T Consensus       109 ~d~iiiDtpG~~~~~~~~~l~~~~~~~~~~-~~iv~vvD~~~~~~~~~~~~~~~~~~~~~~~--~~~p~~iv~NK~D~~~  185 (262)
T 1yrb_A          109 NDYVLIDTPGQMETFLFHEFGVRLMENLPY-PLVVYISDPEILKKPNDYCFVRFFALLIDLR--LGATTIPALNKVDLLS  185 (262)
T ss_dssp             CSEEEEECCSSHHHHHHSHHHHHHHHTSSS-CEEEEEECGGGCCSHHHHHHHHHHHHHHHHH--HTSCEEEEECCGGGCC
T ss_pred             CCEEEEeCCCccchhhhhhhHHHHHHHHhh-ceEEeccchhhhcCHHHHHHHHHHHHHHhcc--cCCCeEEEEecccccc
Confidence            4678999999876543221      13355 8889999886543333321111   111112  2689999999999965


Q ss_pred             CcccccCCCCCCcc--cHHH-HHH-----------------HHHHhCC-CceEEeccCCCCCHHHHHHHHHHHHc
Q 036449          125 DKQFFIDHPGAVPI--STAQ-GEE-----------------LRKLIGA-PAYIECSSKTQQNVKAVFDAAIRVVL  178 (197)
Q Consensus       125 ~~~~~~~~~~~~~~--~~~~-~~~-----------------~~~~~~~-~~~~~~sa~~~~~i~~l~~~i~~~~~  178 (197)
                      ......    ....  ..+. ...                 +++.++. .+++++||+++.|+++++++|.+.+.
T Consensus       186 ~~~~~~----~~~~l~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~SA~~~~gi~~l~~~i~~~~~  256 (262)
T 1yrb_A          186 EEEKER----HRKYFEDIDYLTARLKLDPSMQGLMAYKMCSMMTEVLPPVRVLYLSAKTREGFEDLETLAYEHYC  256 (262)
T ss_dssp             HHHHHH----HHHHHHCHHHHHHHHHHCCSHHHHHHHHHHHHHHHHSCCCCCEECCTTTCTTHHHHHHHHHHHHH
T ss_pred             cccHHH----HHHHHhChHHHHHHHhccccccchhHhHHHHHHHHhcCcccceEEEecCcccHHHHHHHHHHHhc
Confidence            321000    0000  0000 001                 1234443 27999999999999999999988764

>2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A

Probab=99.58  E-value=4.7e-14  Score=107.34  Aligned_cols=82  Identities=18%  Similarity=0.167  Sum_probs=54.0

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhhCCC-CCCCCCce-eeeeeEEEEECC-------------------eEEEEEEEeCCCcc
Q 036449            7 IKCVTVGDGAVGKTCLLISYTSNTF-PTDYVPTV-FDNFSANVVVNG-------------------STVNLGLWDTAGQE   65 (197)
Q Consensus         7 ~~i~v~G~~~~GKstli~~~~~~~~-~~~~~~~~-~~~~~~~~~~~~-------------------~~~~~~i~D~~G~~   65 (197)
                      ++|+++|.+|+|||||++++.+... ..+++.++ ..... ...+++                   ....+++||+||..
T Consensus         2 ~~v~IVG~pnvGKSTL~n~L~~~~~~v~~~p~~Ti~pn~g-~~~v~~~~l~~~~~~~~~~~~~~~~~~~~i~lvDtpGl~   80 (368)
T 2dby_A            2 LAVGIVGLPNVGKSTLFNALTRANALAANYPFATIDKNVG-VVPLEDERLYALQRTFAKGERVPPVVPTHVEFVDIAGLV   80 (368)
T ss_dssp             CSEEEECCSSSSHHHHHHHHHHHHTTCSSCCGGGGSTTEE-EEECCCHHHHHHHHHHCBTTBCCCEECCEEEEEECCSCC
T ss_pred             cEEEEECCCCCCHHHHHHHHhCCCCcccCCCCceecccee-eEecChHHHHHHHHHhcccccccccCCceEEEEECCCcc
Confidence            6899999999999999999987542 23333332 11111 112211                   12468899999987


Q ss_pred             cccc----ccc---cCcCCCcEEEEEEeCCC
Q 036449           66 DYNR----LRP---LSYRGADVFILAFSLIS   89 (197)
Q Consensus        66 ~~~~----~~~---~~~~~~~~~i~v~d~~~   89 (197)
                      ...+    +..   ..++.+|++++|+|.++
T Consensus        81 ~~a~~~~~lg~~fl~~ir~ad~ii~VvD~~~  111 (368)
T 2dby_A           81 KGAHKGEGLGNQFLAHIREVAAIAHVLRCFP  111 (368)
T ss_dssp             CCCCSSSCTTHHHHHHHHTCSEEEEEEECCC
T ss_pred             ccccccchHHHHHHHHHHhCCEEEEEEECCC
Confidence            6532    211   23678999999999985

>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10

Probab=99.57  E-value=2.4e-15  Score=113.85  Aligned_cols=104  Identities=17%  Similarity=0.209  Sum_probs=64.4

Q ss_pred             EEEEEEeCCCccccccccccCcCCCcEEEEEEeCCCchhHHHHHHHHHHHHhhhCCCCCEEEEeeCCcccCCcccccCCC
Q 036449           54 VNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLRDDKQFFIDHP  133 (197)
Q Consensus        54 ~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~~~ivv~nK~D~~~~~~~~~~~~  133 (197)
                      +.+.+|||||.......   ....+|++++|+|.+....++.+ .   ...  .  +.|.++|+||+|+.....      
T Consensus       149 ~~i~liDTpG~~~~~~~---~~~~aD~vl~Vvd~~~~~~~~~l-~---~~~--~--~~p~ivv~NK~Dl~~~~~------  211 (341)
T 2p67_A          149 YDVVIVETVGVGQSETE---VARMVDCFISLQIAGGGDDLQGI-K---KGL--M--EVADLIVINKDDGDNHTN------  211 (341)
T ss_dssp             CSEEEEEEECCTTHHHH---HHTTCSEEEEEECC------CCC-C---HHH--H--HHCSEEEECCCCTTCHHH------
T ss_pred             CCEEEEeCCCccchHHH---HHHhCCEEEEEEeCCccHHHHHH-H---Hhh--h--cccCEEEEECCCCCChHH------
Confidence            56889999996543322   35789999999999765432221 0   011  1  357899999999965321      


Q ss_pred             CCCcccH--HHHHHHHHHhC------CCceEEeccCCCCCHHHHHHHHHHHHc
Q 036449          134 GAVPIST--AQGEELRKLIG------APAYIECSSKTQQNVKAVFDAAIRVVL  178 (197)
Q Consensus       134 ~~~~~~~--~~~~~~~~~~~------~~~~~~~sa~~~~~i~~l~~~i~~~~~  178 (197)
                          ...  ++.+......+      ..+++++||++|.|+++++++|.+.+.
T Consensus       212 ----~~~~~~~l~~~l~~~~~~~~~~~~~vi~iSA~~g~gi~~L~~~l~~~~~  260 (341)
T 2p67_A          212 ----VAIARHMYESALHILRRKYDEWQPRVLTCSALEKRGIDEIWHAIIDFKT  260 (341)
T ss_dssp             ----HHHHHHHHHHHHHHSCCSBTTBCCEEEECBGGGTBSHHHHHHHHHHHHH
T ss_pred             ----HHHHHHHHHHHHHhccccccCCCCcEEEeeCCCCCCHHHHHHHHHHHHH
Confidence                111  11222112222      237899999999999999999998764

>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}

Probab=99.53  E-value=5e-14  Score=104.90  Aligned_cols=98  Identities=16%  Similarity=0.148  Sum_probs=79.2

Q ss_pred             ccccccccccCcCCCcEEEEEEeCCCch-hHHHHHHHHHHHHhhhCCCCCEEEEeeCCcccCCcccccCCCCCCccc-HH
Q 036449           64 QEDYNRLRPLSYRGADVFILAFSLISKA-SYENVSKKWIPELKHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPIS-TA  141 (197)
Q Consensus        64 ~~~~~~~~~~~~~~~~~~i~v~d~~~~~-s~~~~~~~~~~~i~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~-~~  141 (197)
                      ++++..+...++.++|++++|+|++++. ++..+ ..|+..+...  ++|+++|+||+|+.+...          +. .+
T Consensus        66 ~er~~~l~r~~~~naD~vliV~d~~~p~~s~~~l-~~~l~~~~~~--~~~~ilV~NK~DL~~~~~----------v~~~~  132 (302)
T 2yv5_A           66 EERKNLLIRPKVANVDRVIIVETLKMPEFNNYLL-DNMLVVYEYF--KVEPVIVFNKIDLLNEEE----------KKELE  132 (302)
T ss_dssp             CCCSCEEETTEEESCCEEEEEECSTTTTCCHHHH-HHHHHHHHHT--TCEEEEEECCGGGCCHHH----------HHHHH
T ss_pred             CChHHHHhHHHHHhcCEEEEEEECCCCCCCHHHH-HHHHHHHHhC--CCCEEEEEEcccCCCccc----------cHHHH
Confidence            6778888888999999999999999986 78776 7888877664  899999999999965321          12 34


Q ss_pred             HHHHHHHHhCCCceEEeccCCCCCHHHHHHHHHH
Q 036449          142 QGEELRKLIGAPAYIECSSKTQQNVKAVFDAAIR  175 (197)
Q Consensus       142 ~~~~~~~~~~~~~~~~~sa~~~~~i~~l~~~i~~  175 (197)
                      +...+++..+. +++++||+++.|++++++.+..
T Consensus       133 ~~~~~~~~~g~-~~~~~SA~~g~gi~~L~~~l~G  165 (302)
T 2yv5_A          133 RWISIYRDAGY-DVLKVSAKTGEGIDELVDYLEG  165 (302)
T ss_dssp             HHHHHHHHTTC-EEEECCTTTCTTHHHHHHHTTT
T ss_pred             HHHHHHHHCCC-eEEEEECCCCCCHHHHHhhccC
Confidence            45566667777 8999999999999999987653

>4a9a_A Ribosome-interacting GTPase 1; DRG-DFRP complex, ribosome binding GTPase; 2.67A {Saccharomyces cerevisiae}

Probab=99.51  E-value=1.4e-13  Score=104.76  Aligned_cols=159  Identities=14%  Similarity=0.096  Sum_probs=97.5

Q ss_pred             ceeEEEEEcCCCCCHHHHHHHHhhCCC-CCCCCCceeeeeeEEEEECCeEEEEEEEeCCCcccccc-------ccccCcC
Q 036449            5 RFIKCVTVGDGAVGKTCLLISYTSNTF-PTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQEDYNR-------LRPLSYR   76 (197)
Q Consensus         5 ~~~~i~v~G~~~~GKstli~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~-------~~~~~~~   76 (197)
                      ...+|+++|.|+||||||+|++.+... ..+++.|+.+.....+.+++  .+++++|+||.-.-..       .....++
T Consensus        71 g~a~V~ivG~PNvGKSTL~n~Lt~~~~~v~~~pftT~~~~~g~~~~~~--~~i~l~D~pGl~~~a~~~~~~g~~~l~~i~  148 (376)
T 4a9a_A           71 GVASVGFVGFPSVGKSTLLSKLTGTESEAAEYEFTTLVTVPGVIRYKG--AKIQMLDLPGIIDGAKDGRGRGKQVIAVAR  148 (376)
T ss_dssp             SSEEEEEECCCCHHHHHHHHHHHSBCCCGGGTCSSCCCEEEEEEEETT--EEEEEEECGGGCCC-----CHHHHHHHHHH
T ss_pred             CCCeEEEECCCCCCHHHHHHHHhCCCCcccCCCCceeeeeeEEEEeCC--cEEEEEeCCCccCCchhhhHHHHHHHHHHH
Confidence            346899999999999999999997553 35667777666666777777  5677999999532211       1112356


Q ss_pred             CCcEEEEEEeCCCchhHHHHHHHHHHHHhhh---CCCCCEEEEeeCCcccCCcccccCCCCCCcccHHHHHHHHHHhCCC
Q 036449           77 GADVFILAFSLISKASYENVSKKWIPELKHY---APGVPIILVGTKLDLRDDKQFFIDHPGAVPISTAQGEELRKLIGAP  153 (197)
Q Consensus        77 ~~~~~i~v~d~~~~~s~~~~~~~~~~~i~~~---~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  153 (197)
                      .+|++++|+|.+++.....   .+...+...   ..+.|.+++.||.|......  .........+.++...+...+.. 
T Consensus       149 ~ad~il~vvD~~~p~~~~~---~i~~EL~~~~~~l~~k~~~i~~nK~d~~gi~i--~~~~~~~~l~~eeik~il~~~~l-  222 (376)
T 4a9a_A          149 TCNLLFIILDVNKPLHHKQ---IIEKELEGVGIRLNKTPPDILIKKKEKGGISI--TNTVPLTHLGNDEIRAVMSEYRI-  222 (376)
T ss_dssp             HCSEEEEEEETTSHHHHHH---HHHHHHHHTTEEETCCCCCEEEEECSSSCEEE--EESSCCSSCCHHHHHHHHHHTTC-
T ss_pred             hcCccccccccCccHHHHH---HHHHHHHHhhHhhccCChhhhhhHhhhhhhhh--hcchhhhhccHHHHHHHHHHhcc-
Confidence            7999999999998743322   222333332   24678889999999753211  01111222455666666655554 


Q ss_pred             ceEEeccCCCCCHHHHHH
Q 036449          154 AYIECSSKTQQNVKAVFD  171 (197)
Q Consensus       154 ~~~~~sa~~~~~i~~l~~  171 (197)
                      ..-++-...+...+++.+
T Consensus       223 t~kpv~~~~nv~eddl~d  240 (376)
T 4a9a_A          223 NSAEIAFRCDATVDDLID  240 (376)
T ss_dssp             CSEEEEECSCCCHHHHHH
T ss_pred             cCCCeeecccCCHHHHHH
Confidence            222333333444555444

>3zvr_A Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mitochondrial fission, GT stalk, PH, BSE, membrane fission; HET: 1PE; 3.10A {Rattus norvegicus} PDB: 3snh_A

Probab=99.51  E-value=1.4e-14  Score=118.65  Aligned_cols=158  Identities=20%  Similarity=0.154  Sum_probs=96.0

Q ss_pred             ceeEEEEEcCCCCCHHHHHHHHhhCCC-CCCCCCceee------------------------------------------
Q 036449            5 RFIKCVTVGDGAVGKTCLLISYTSNTF-PTDYVPTVFD------------------------------------------   41 (197)
Q Consensus         5 ~~~~i~v~G~~~~GKstli~~~~~~~~-~~~~~~~~~~------------------------------------------   41 (197)
                      ...+|+|+|.+++|||||++++++..+ +....+++..                                          
T Consensus        50 ~lp~I~vvG~~saGKSSllnaL~g~~~LP~g~g~~Tr~Pl~l~l~~~~~~~~~~l~~~~~~~~~~~~v~~~I~~~~~~~~  129 (772)
T 3zvr_A           50 DLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNSTTEYAEFLHCKGKKFTDFEEVRLEIEAETDRVT  129 (772)
T ss_dssp             CCSEEEEEECTTTCHHHHHHHHHSSCCSCCSSSCSCSSCEEEEEEECSSCEEECSTTTTCCBCCHHHHHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCCCcHHHHHHHHhCCCccCcCCccccccceEEEeecCCcchhheeccCCcccCCHHHHHHHHHHHHhhhc
Confidence            347999999999999999999998765 2221111100                                          


Q ss_pred             ---------eeeEEEEECCeEEEEEEEeCCCccc-------------cccccccCc-CCCcEEEEEEeCCCchhHHHHHH
Q 036449           42 ---------NFSANVVVNGSTVNLGLWDTAGQED-------------YNRLRPLSY-RGADVFILAFSLISKASYENVSK   98 (197)
Q Consensus        42 ---------~~~~~~~~~~~~~~~~i~D~~G~~~-------------~~~~~~~~~-~~~~~~i~v~d~~~~~s~~~~~~   98 (197)
                               .....+... ....+.++||||...             +..+...++ ..+|++++|+|++......+. .
T Consensus       130 g~~~~is~~~i~l~I~~P-~~~qL~LVDTPGi~~~~~~~qp~di~~~i~~lv~~yi~~~aDlIL~VVDAs~~~~~~d~-l  207 (772)
T 3zvr_A          130 GTNKGISPVPINLRVYSP-HVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDA-L  207 (772)
T ss_dssp             CSTTCCCSCCEEEEEEET-TCCSEEEEECCCCCCCCSSCCCCHHHHHHHHHHHHHHTSTTEEEEEEEETTSCSSSCHH-H
T ss_pred             CCCCcccccceEEEEecC-CCCceEEEECCCcccCCCCCCcHHHHHHHHHHHHHHHhcCCcEEEEEEcCCCCcchhHH-H
Confidence                     000001111 112477999999533             112222233 578999999999876443333 2


Q ss_pred             HHHHHHhhhCCCCCEEEEeeCCcccCCcccccCCCCCCcccHHHHHH--HHHHhCCCceEEeccCCCCCHHHHHHHHHHH
Q 036449           99 KWIPELKHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPISTAQGEE--LRKLIGAPAYIECSSKTQQNVKAVFDAAIRV  176 (197)
Q Consensus        99 ~~~~~i~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~sa~~~~~i~~l~~~i~~~  176 (197)
                      .+...+...  +.|+++|+||+|+.....          ........  +....+..+++.+||++|.|++++++.+.+.
T Consensus       208 ~ll~~L~~~--g~pvIlVlNKiDlv~~~~----------~~~~il~~~~~~l~lg~~~VV~iSA~~G~GvdeL~eaI~~e  275 (772)
T 3zvr_A          208 KIAKEVDPQ--GQRTIGVITKLDLMDEGT----------DARDVLENKLLPLRRGYIGVVNRSQKDIDGKKDITAALAAE  275 (772)
T ss_dssp             HHHHHHCTT--CSSEEEEEECTTSSCTTC----------CSHHHHTTCSSCCSSCEEECCCCCCEESSSSEEHHHHHHHH
T ss_pred             HHHHHHHhc--CCCEEEEEeCcccCCcch----------hhHHHHHHHhhhhhccCCceEEecccccccchhHHHHHHHH
Confidence            445555544  789999999999975432          11111100  0001132356789999999999999998873

>3j25_A Tetracycline resistance protein TETM; antibiotic resistance, translation; HET: GCP; 7.20A {Enterococcus faecalis}

Probab=99.51  E-value=7.6e-15  Score=119.39  Aligned_cols=115  Identities=20%  Similarity=0.150  Sum_probs=78.2

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHhh--CCCCCC----CCCceee----------ee-eEEEEECCeEEEEEEEeCCCccccc
Q 036449            6 FIKCVTVGDGAVGKTCLLISYTS--NTFPTD----YVPTVFD----------NF-SANVVVNGSTVNLGLWDTAGQEDYN   68 (197)
Q Consensus         6 ~~~i~v~G~~~~GKstli~~~~~--~~~~~~----~~~~~~~----------~~-~~~~~~~~~~~~~~i~D~~G~~~~~   68 (197)
                      .-||+++|+.++|||||..+++.  +.....    ...+..+          .. .....+.-..+.++++|||||.+|.
T Consensus         2 IRNi~IiaHvD~GKTTL~e~LL~~~G~i~~~g~v~~g~~~~D~~~~EreRGITI~s~~~~~~~~~~~iNlIDTPGH~DF~   81 (638)
T 3j25_A            2 IINIGVLAHVDAGKTTLTESLLYNSGAITELGSVDKGTTRTDNTLLERQRGITIQTGITSFQWENTKVNIIDTPGHMDFL   81 (638)
T ss_dssp             CCCCEEECCSTTSSHHHHHHHHHHHTCCSSCSSCCCSCCSTTCSTTHHHHSSCSSCCCCCCBCSSCBCCCEECCCSSSTH
T ss_pred             eeEEEEEcCCCCCHHHHHHHHHHHcCCCccccccccCCcccCCcHHHHhCCCcEEeeeEEEEECCEEEEEEECCCcHHHH
Confidence            45799999999999999999873  222110    0000000          00 1111122233668899999999999


Q ss_pred             cccccCcCCCcEEEEEEeCCCchhHHHHHHHHHHHHhhhCCCCCEEEEeeCCcccC
Q 036449           69 RLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLRD  124 (197)
Q Consensus        69 ~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~~~ivv~nK~D~~~  124 (197)
                      ......++-+|++|+|+|+..+-..+..  ..+......  ++|.++++||+|...
T Consensus        82 ~Ev~raL~~~DgavlVVDa~~GV~~qT~--~v~~~a~~~--~lp~i~~INKmDr~~  133 (638)
T 3j25_A           82 AEVYRSLSVLDGAILLISAKDGVQAQTR--ILFHALRKM--GIPTIFFINKIDQNG  133 (638)
T ss_dssp             HHHHHHHTTCSEEECCEESSCTTCSHHH--HHHHHHHHH--TCSCEECCEECCSSS
T ss_pred             HHHHHHHHHhCEEEEEEeCCCCCcHHHH--HHHHHHHHc--CCCeEEEEecccccc
Confidence            8888889999999999999987555443  333444444  689999999999864

>4fn5_A EF-G 1, elongation factor G 1; translation, translation-antibiotic compl; HET: 0UO; 2.90A {Pseudomonas aeruginosa}

Probab=99.47  E-value=9e-13  Score=108.56  Aligned_cols=116  Identities=18%  Similarity=0.172  Sum_probs=78.2

Q ss_pred             ceeEEEEEcCCCCCHHHHHHHHhhC--------CCCCC--CCCceeeee---------eEEEEEC-----CeEEEEEEEe
Q 036449            5 RFIKCVTVGDGAVGKTCLLISYTSN--------TFPTD--YVPTVFDNF---------SANVVVN-----GSTVNLGLWD   60 (197)
Q Consensus         5 ~~~~i~v~G~~~~GKstli~~~~~~--------~~~~~--~~~~~~~~~---------~~~~~~~-----~~~~~~~i~D   60 (197)
                      +.=||+++|+.++|||||..+++..        .....  +.-+.....         ...+.+.     ...+.++++|
T Consensus        12 ~IRNi~IiaHvd~GKTTL~d~LL~~~g~i~~~g~v~~~~~~~D~~~~E~eRGITI~s~~~s~~~~~~~~~~~~~~iNlID   91 (709)
T 4fn5_A           12 RYRNIGICAHVDAGKTTTTERVLFYTGVNHKLGEVHDGAATTDWMVQEQERGITITSAAVTTFWKGSRGQYDNYRVNVID   91 (709)
T ss_dssp             GEEEEEEECCSSSCHHHHHHHHHHHHHHHHHC------------------------CCEEEEEECCTTSCSCCEEEEEEC
T ss_pred             HCeEEEEEcCCCCCHHHHHHHHHHhcCCCCcCceecCCCccCCChHHHHHcCCeEEeeeEEEEeccCcCCCCCEEEEEEe
Confidence            3457999999999999999888631        11111  000000111         1122222     1358899999


Q ss_pred             CCCccccccccccCcCCCcEEEEEEeCCCchhHHHHHHHHHHHHhhhCCCCCEEEEeeCCcccC
Q 036449           61 TAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLRD  124 (197)
Q Consensus        61 ~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~~~ivv~nK~D~~~  124 (197)
                      ||||-+|.......++-+|++|+|+|+..+-..+.. .-|.. ....  ++|.++++||+|...
T Consensus        92 TPGHvDF~~Ev~~aLr~~DgavlvVDaveGV~~qT~-~v~~~-a~~~--~lp~i~~iNKiDr~~  151 (709)
T 4fn5_A           92 TPGHVDFTIEVERSLRVLDGAVVVFCGTSGVEPQSE-TVWRQ-ANKY--GVPRIVYVNKMDRQG  151 (709)
T ss_dssp             CCSCTTCHHHHHHHHHHCSEEEEEEETTTCSCHHHH-HHHHH-HHHH--TCCEEEEEECSSSTT
T ss_pred             CCCCcccHHHHHHHHHHhCeEEEEEECCCCCchhHH-HHHHH-HHHc--CCCeEEEEccccccC
Confidence            999999998888888899999999999988666554 34444 3444  699999999999753

>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*

Probab=99.42  E-value=1.1e-13  Score=104.57  Aligned_cols=104  Identities=14%  Similarity=0.163  Sum_probs=62.7

Q ss_pred             EEEEEEeCCCccccccccccCcCCCcEEEEEEeCCCchhHHHHHHHHHHHHhhhCCCCCEEEEeeCCcccCCcccccCCC
Q 036449           54 VNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLRDDKQFFIDHP  133 (197)
Q Consensus        54 ~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~~~ivv~nK~D~~~~~~~~~~~~  133 (197)
                      +.+.++||||...-.   ......+|.+++++|...++..+.+ ..   .+.    ..+.++++||+|+.....      
T Consensus       148 ~~~iliDT~Gi~~~~---~~v~~~~d~vl~v~d~~~~~~~~~i-~~---~i~----~~~~ivvlNK~Dl~~~~~------  210 (337)
T 2qm8_A          148 FDVILVETVGVGQSE---TAVADLTDFFLVLMLPGAGDELQGI-KK---GIF----ELADMIAVNKADDGDGER------  210 (337)
T ss_dssp             CCEEEEEECSSSSCH---HHHHTTSSEEEEEECSCC------C-CT---THH----HHCSEEEEECCSTTCCHH------
T ss_pred             CCEEEEECCCCCcch---hhHHhhCCEEEEEEcCCCcccHHHH-HH---HHh----ccccEEEEEchhccCchh------
Confidence            567799999964321   1234689999999998755332211 11   111    235577779999754221      


Q ss_pred             CCCcccHHHHHHHHHHh---C------CCceEEeccCCCCCHHHHHHHHHHHHc
Q 036449          134 GAVPISTAQGEELRKLI---G------APAYIECSSKTQQNVKAVFDAAIRVVL  178 (197)
Q Consensus       134 ~~~~~~~~~~~~~~~~~---~------~~~~~~~sa~~~~~i~~l~~~i~~~~~  178 (197)
                          ......+.+....   .      .++++.+||+++.|++++++.|.+...
T Consensus       211 ----~s~~~~~~l~~a~~l~~~~~~~~~~~vl~~Sal~g~gi~~L~~~I~~~~~  260 (337)
T 2qm8_A          211 ----RASAAASEYRAALHILTPPSATWTPPVVTISGLHGKGLDSLWSRIEDHRS  260 (337)
T ss_dssp             ----HHHHHHHHHHHHHTTBCCSBTTBCCCEEEEBTTTTBSHHHHHHHHHHHHH
T ss_pred             ----HHHHHHHHHHHHHHhccccccCCCCCEEEEeCCCCCCHHHHHHHHHHHHH
Confidence                1222233333321   1      237899999999999999999988654

>3l82_B F-box only protein 4; TRFH domain, helix, GTPase domain, acetylation, ADP- ribosylation, alternative splicing, cell cycle, cell division; 2.40A {Homo sapiens}

Probab=99.39  E-value=8.5e-14  Score=96.55  Aligned_cols=108  Identities=9%  Similarity=-0.013  Sum_probs=67.7

Q ss_pred             CCCccccccccccCcCCCcEEEEEEeCCCchhHHHHHHHH---HHHHhhh--CCCCCEEEEeeCC-cccCCcccccCCCC
Q 036449           61 TAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKW---IPELKHY--APGVPIILVGTKL-DLRDDKQFFIDHPG  134 (197)
Q Consensus        61 ~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~---~~~i~~~--~~~~~~ivv~nK~-D~~~~~~~~~~~~~  134 (197)
                      .+||+.++.+|..|+.++|++|||+|.+|.+..+ ....+   ...+...  ..+.|++|++||. |+...         
T Consensus       109 ~GGQ~klRplWr~Yy~~TdglIfVVDSsD~~R~e-ak~EL~eL~~mL~ee~~L~gapLLVlANKqqDlp~A---------  178 (227)
T 3l82_B          109 QGSRYSVIPQIQKVCEVVDGFIYVANAEAHKRHE-WQDEFSHIMAMTDPAFGSSGRPLLVLSCISQGDVKR---------  178 (227)
T ss_dssp             --------CCHHHHHHHCSEEEEEEECBTTCCCC-HHHHHHHHHHHSCTTSSCSCSCEEEEEEESSTTSCB---------
T ss_pred             cCcHHHHHHHHHHHhcCCCEEEEEeccccHhHHH-HHHHHHHHHHHhcchhhhCCCeEEEEeCCCcCccCC---------
Confidence            3488999999999999999999999999986554 32333   3333332  2589999999995 66432         


Q ss_pred             CCcccHHHHHH---HHHHhCCCceEEeccCCCCCHHHHHHHHHHHHcCCC
Q 036449          135 AVPISTAQGEE---LRKLIGAPAYIECSSKTQQNVKAVFDAAIRVVLQPP  181 (197)
Q Consensus       135 ~~~~~~~~~~~---~~~~~~~~~~~~~sa~~~~~i~~l~~~i~~~~~~~~  181 (197)
                         .+..+..+   +....+.-.+..|||++|+|+.+.++||.+.+..++
T Consensus       179 ---ms~~EI~e~L~L~~l~R~W~Iq~csA~TGeGL~EGLdWL~~~l~~k~  225 (227)
T 3l82_B          179 ---MPCFYLAHELHLNLLNHPWLVQDTEAETLTGFLNGIEWILEEVESKR  225 (227)
T ss_dssp             ---CCHHHHHHHTTGGGGCSCEEEEEEETTTCTTHHHHHHHHTTTTTTC-
T ss_pred             ---CCHHHHHHHcCCcCCCCCEEEEEeECCCCcCHHHHHHHHHHHHHhhc
Confidence               22222221   111111114677999999999999999998775543

>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}

Probab=99.26  E-value=2.9e-12  Score=97.95  Aligned_cols=88  Identities=17%  Similarity=0.098  Sum_probs=48.6

Q ss_pred             ceeEEEEEcCCCCCHHHHHHHHhhCCCCC-CCCCceeeeeeEEEEECCe---------------EEEEEEEeCCCccccc
Q 036449            5 RFIKCVTVGDGAVGKTCLLISYTSNTFPT-DYVPTVFDNFSANVVVNGS---------------TVNLGLWDTAGQEDYN   68 (197)
Q Consensus         5 ~~~~i~v~G~~~~GKstli~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~---------------~~~~~i~D~~G~~~~~   68 (197)
                      ..++|+++|.+|+|||||++++.+..+.. +++.++.......+.+.+.               ...+++||+||.....
T Consensus        21 ~~~kvgIVG~pnvGKSTL~n~Ltg~~~~~~~~p~tTi~p~~g~v~v~~~r~~~l~~~~~p~~~~~~~i~lvDtpGl~~~a  100 (396)
T 2ohf_A           21 TSLKIGIVGLPNVGKSTFFNVLTNSQASAENFPFCTIDPNESRVPVPDERFDFLCQYHKPASKIPAFLNVVDIAGLVKGA  100 (396)
T ss_dssp             SCCCEEEECCSSSSHHHHHHHHHC-------------CCSEEEEECCCHHHHHHHHHHCCSEEECCEEEEEECCC-----
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHCCCccccCCCccccCceeEEEEECCccceeeccccCcccccccccEEEECCCccccc
Confidence            34789999999999999999999875532 2222332222223333321               2358899999987644


Q ss_pred             c-------ccccCcCCCcEEEEEEeCCCchh
Q 036449           69 R-------LRPLSYRGADVFILAFSLISKAS   92 (197)
Q Consensus        69 ~-------~~~~~~~~~~~~i~v~d~~~~~s   92 (197)
                      +       .+..+++.+|++++|+|.++.++
T Consensus       101 s~~~glg~~~l~~ir~aD~Il~VvD~~~~~~  131 (396)
T 2ohf_A          101 HNGQGLGNAFLSHISACDGIFHLTRAFEDDD  131 (396)
T ss_dssp             ------CCHHHHHHHTSSSEEEEEEC-----
T ss_pred             chhhHHHHHHHHHHHhcCeEEEEEecCCCcc
Confidence            3       33445778999999999986443

>3l2o_B F-box only protein 4; small G protein fold, UBL conjugation pathway, ubiquitin Pro ligase, protein binding-cell cycle complex; 2.80A {Homo sapiens}

Probab=99.25  E-value=3.1e-12  Score=92.93  Aligned_cols=108  Identities=9%  Similarity=-0.028  Sum_probs=72.5

Q ss_pred             CCCccccccccccCcCCCcEEEEEEeCCCchhHHHHHHH---HHHHHhhh--CCCCCEEEEeeC-CcccCCcccccCCCC
Q 036449           61 TAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKK---WIPELKHY--APGVPIILVGTK-LDLRDDKQFFIDHPG  134 (197)
Q Consensus        61 ~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~---~~~~i~~~--~~~~~~ivv~nK-~D~~~~~~~~~~~~~  134 (197)
                      .+||+.++.+|..|+.++|++|||+|.+|.+.++ ...+   +...+...  ..+.|++|++|| .|+...         
T Consensus       194 ~GGQ~~lRplWr~Yy~~tdglIfVVDSsDreRle-ak~EL~eL~~mL~e~~~l~~apLLVfANKkQDlp~A---------  263 (312)
T 3l2o_B          194 QGSRYSVIPQIQKVCEVVDGFIYVANAEAHKRHE-WQDEFSHIMAMTDPAFGSSGRPLLVLSCISQGDVKR---------  263 (312)
T ss_dssp             ---CCCCCHHHHHHHHHCSEEEECCBCBTTCCCC-HHHHHHHHHHHHCHHHHCTTCCEEEEEEESSTTSCB---------
T ss_pred             CCCHHHHHHHHHHHhcCCCEEEEEecCCcHhHHH-HHHHHHHHHHHhcchhhcCCCeEEEEeCCcccccCC---------
Confidence            4688999999999999999999999999987654 2232   22444332  358999999996 577542         


Q ss_pred             CCcccHHHHHH---HHHHhCCCceEEeccCCCCCHHHHHHHHHHHHcCCC
Q 036449          135 AVPISTAQGEE---LRKLIGAPAYIECSSKTQQNVKAVFDAAIRVVLQPP  181 (197)
Q Consensus       135 ~~~~~~~~~~~---~~~~~~~~~~~~~sa~~~~~i~~l~~~i~~~~~~~~  181 (197)
                         .+..+..+   +....+.-.+..|||.+|+|+.+.++||.+.+..++
T Consensus       264 ---ms~~EI~e~L~L~~l~r~W~Iq~csA~tGeGL~EGldWL~~~l~~k~  310 (312)
T 3l2o_B          264 ---MPCFYLAHELHLNLLNHPWLVQDTEAETLTGFLNGIEWILEEVESKR  310 (312)
T ss_dssp             ---CCHHHHHHHTTGGGGCSCEEEEEEETTTCTTHHHHHHHHHHHSCC--
T ss_pred             ---CCHHHHHHHcCCccCCCcEEEEecccCCCcCHHHHHHHHHHHHHhhc
Confidence               22222211   111111114677999999999999999999886543

>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2

Probab=99.21  E-value=5.5e-10  Score=85.57  Aligned_cols=85  Identities=22%  Similarity=0.244  Sum_probs=56.8

Q ss_pred             ceeEEEEEcCCCCCHHHHHHHHhhCCC--CCCCCCceeeeeeEEEEECCe---------------EEEEEEEeCCCcccc
Q 036449            5 RFIKCVTVGDGAVGKTCLLISYTSNTF--PTDYVPTVFDNFSANVVVNGS---------------TVNLGLWDTAGQEDY   67 (197)
Q Consensus         5 ~~~~i~v~G~~~~GKstli~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~---------------~~~~~i~D~~G~~~~   67 (197)
                      +..+|.++|.+|+|||||++.+.+...  ..+++.++.......+.+.+.               ...+.+||+||....
T Consensus        19 ~g~~vgiVG~pnaGKSTL~n~Ltg~~~a~~~~~p~tTi~p~~G~v~v~~~r~~~l~~~~~~~~~v~~~i~lvD~pGl~~~   98 (392)
T 1ni3_A           19 NNLKTGIVGMPNVGKSTFFRAITKSVLGNPANYPYATIDPEEAKVAVPDERFDWLCEAYKPKSRVPAFLTVFDIAGLTKG   98 (392)
T ss_dssp             SCCEEEEEECSSSSHHHHHHHHHHSTTTSTTCCSSCCCCTTEEEEEECCHHHHHHHHHHCCSEEECEEEEEECTGGGCCC
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHCCCcccccCCCceeecceeeeeeeCCcchhhhhhhcccccccCcceEEEeccccccC
Confidence            347899999999999999999998654  233444443333334444431               135789999995432


Q ss_pred             cc-------ccccCcCCCcEEEEEEeCCC
Q 036449           68 NR-------LRPLSYRGADVFILAFSLIS   89 (197)
Q Consensus        68 ~~-------~~~~~~~~~~~~i~v~d~~~   89 (197)
                      .+       .....+..+|++++|+|..+
T Consensus        99 ~s~~e~L~~~fl~~ir~~d~il~Vvd~~~  127 (392)
T 1ni3_A           99 ASTGVGLGNAFLSHVRAVDAIYQVVRAFD  127 (392)
T ss_dssp             CCSSSSSCHHHHHHHTTCSEEEEEEECCC
T ss_pred             CcHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence            21       22234578999999999864

>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}

Probab=99.09  E-value=1.7e-10  Score=88.14  Aligned_cols=98  Identities=17%  Similarity=0.253  Sum_probs=74.4

Q ss_pred             CccccccccccCcCCCcEEEEEEeCCCchhHHHHHHHHHHHHhhhCCCCCEEEEeeCCcccCCcccccCCCCCCcccHHH
Q 036449           63 GQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPISTAQ  142 (197)
Q Consensus        63 G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~  142 (197)
                      ..++|++....+.+.++++++|+|++++.      ..|...+.....+.|+++|+||+|+.+..           ...+.
T Consensus        55 ~~e~f~~~l~~i~~~~~~il~VvD~~d~~------~~~~~~l~~~~~~~p~ilV~NK~DL~~~~-----------~~~~~  117 (368)
T 3h2y_A           55 TDDDFLRILNGIGKSDALVVKIVDIFDFN------GSWLPGLHRFVGNNKVLLVGNKADLIPKS-----------VKHDK  117 (368)
T ss_dssp             -CHHHHHHHHHHHHSCCEEEEEEETTSHH------HHCCTTHHHHSSSSCEEEEEECGGGSCTT-----------SCHHH
T ss_pred             CHHHHHHHHHHHhccCcEEEEEEECCCCc------ccHHHHHHHHhCCCcEEEEEEChhcCCcc-----------cCHHH
Confidence            45788888888888999999999999853      45666666666689999999999996532           11222


Q ss_pred             H----HHHHHHhCCC--ceEEeccCCCCCHHHHHHHHHHHH
Q 036449          143 G----EELRKLIGAP--AYIECSSKTQQNVKAVFDAAIRVV  177 (197)
Q Consensus       143 ~----~~~~~~~~~~--~~~~~sa~~~~~i~~l~~~i~~~~  177 (197)
                      .    ..+++..+..  +++.+||++|.|++++++.|.+..
T Consensus       118 ~~~~l~~~~~~~g~~~~~v~~iSA~~g~gi~~L~~~l~~~~  158 (368)
T 3h2y_A          118 VKHWMRYSAKQLGLKPEDVFLISAAKGQGIAELADAIEYYR  158 (368)
T ss_dssp             HHHHHHHHHHHTTCCCSEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCCcccEEEEeCCCCcCHHHHHhhhhhhc
Confidence            2    3335556652  689999999999999999998754

>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}

Probab=98.99  E-value=5.3e-10  Score=85.41  Aligned_cols=103  Identities=18%  Similarity=0.218  Sum_probs=73.1

Q ss_pred             CccccccccccCcCCCcEEEEEEeCCCchhHHHHHHHHHHHHhhhCCCCCEEEEeeCCcccCCcccccCCCCCCcccHHH
Q 036449           63 GQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPISTAQ  142 (197)
Q Consensus        63 G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~  142 (197)
                      .+++|++....+...++++++|+|++++.+      .|...+.....+.|+++|+||+|+.+...       ......+.
T Consensus        57 ~~e~f~~~L~~~~~~~~lil~VvD~~d~~~------s~~~~l~~~l~~~piilV~NK~DLl~~~~-------~~~~~~~~  123 (369)
T 3ec1_A           57 DDDDFLSMLHRIGESKALVVNIVDIFDFNG------SFIPGLPRFAADNPILLVGNKADLLPRSV-------KYPKLLRW  123 (369)
T ss_dssp             --CHHHHHHHHHHHHCCEEEEEEETTCSGG------GCCSSHHHHCTTSCEEEEEECGGGSCTTC-------CHHHHHHH
T ss_pred             CHHHHHHHHHHhhccCcEEEEEEECCCCCC------chhhHHHHHhCCCCEEEEEEChhcCCCcc-------CHHHHHHH
Confidence            478899888888889999999999999863      44444555455789999999999975421       00011122


Q ss_pred             HHHHHHHhCC--CceEEeccCCCCCHHHHHHHHHHHHc
Q 036449          143 GEELRKLIGA--PAYIECSSKTQQNVKAVFDAAIRVVL  178 (197)
Q Consensus       143 ~~~~~~~~~~--~~~~~~sa~~~~~i~~l~~~i~~~~~  178 (197)
                      ...+++..+.  ..++.+||++|.|++++++.+.+...
T Consensus       124 l~~~~~~~g~~~~~v~~iSA~~g~gi~~L~~~I~~~~~  161 (369)
T 3ec1_A          124 MRRMAEELGLCPVDVCLVSAAKGIGMAKVMEAINRYRE  161 (369)
T ss_dssp             HHHHHHTTTCCCSEEEECBTTTTBTHHHHHHHHHHHHT
T ss_pred             HHHHHHHcCCCcccEEEEECCCCCCHHHHHHHHHhhcc
Confidence            2333555565  26899999999999999999987653

>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}

Probab=98.96  E-value=1.2e-08  Score=74.69  Aligned_cols=115  Identities=18%  Similarity=0.212  Sum_probs=63.7

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHhhCCCCCC--------CCCceeeeeeEEEEECCe--EEEEEEEeCCCccccc-------
Q 036449            6 FIKCVTVGDGAVGKTCLLISYTSNTFPTD--------YVPTVFDNFSANVVVNGS--TVNLGLWDTAGQEDYN-------   68 (197)
Q Consensus         6 ~~~i~v~G~~~~GKstli~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~--~~~~~i~D~~G~~~~~-------   68 (197)
                      .++++++|++|+|||||++.+.+...+..        ..+.........+.....  ...++++|++|--...       
T Consensus         2 ~f~v~lvG~nGaGKSTLln~L~g~~~~~~G~i~~~g~~i~~~~~~~~i~~v~q~~~~~~~ltv~d~~~~g~~~~~~~~~~   81 (270)
T 3sop_A            2 DFNIMVVGQSGLGKSTLVNTLFKSQVSRKASSWNREEKIPKTVEIKAIGHVIEEGGVKMKLTVIDTPGFGDQINNENCWE   81 (270)
T ss_dssp             EEEEEEEESSSSSHHHHHHHHHHHHC------------CCCCCSCCEEEESCC----CCEEEEECCCC--CCSBCTTCSH
T ss_pred             eeEEEEECCCCCCHHHHHHHHhCCCCCCCCccccCCcccCcceeeeeeEEEeecCCCcCCceEEechhhhhhcccHHHHH
Confidence            47899999999999999999886432211        000000001111111211  1357899999831100       


Q ss_pred             ---------------------cccccCcCCCcEEEEEEeCC-CchhHHHHHHHHHHHHhhhCCCCCEEEEeeCCcccCC
Q 036449           69 ---------------------RLRPLSYRGADVFILAFSLI-SKASYENVSKKWIPELKHYAPGVPIILVGTKLDLRDD  125 (197)
Q Consensus        69 ---------------------~~~~~~~~~~~~~i~v~d~~-~~~s~~~~~~~~~~~i~~~~~~~~~ivv~nK~D~~~~  125 (197)
                                           ......+..+++.++++|-. .+.+..+.  .++..+...   .++++|.+|.|....
T Consensus        82 ~i~~~~~~~~~~~~~~~LS~G~~qrv~iaRal~~lllldep~~gL~~lD~--~~l~~L~~~---~~vI~Vi~K~D~lt~  155 (270)
T 3sop_A           82 PIEKYINEQYEKFLKEEVNIARKKRIPDTRVHCCLYFISPTGHSLRPLDL--EFMKHLSKV---VNIIPVIAKADTMTL  155 (270)
T ss_dssp             HHHHHHHHHHHHHHHHHSCTTCCSSCCCCSCCEEEEEECCCSSSCCHHHH--HHHHHHHTT---SEEEEEETTGGGSCH
T ss_pred             HHHHHHHHHHHhhhHHhcCcccchhhhhheeeeeeEEEecCCCcCCHHHH--HHHHHHHhc---CcEEEEEeccccCCH
Confidence                                 00111233468889999864 44333332  445555443   899999999998653

>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}

Probab=98.93  E-value=2.5e-08  Score=77.00  Aligned_cols=115  Identities=17%  Similarity=0.200  Sum_probs=61.6

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHhhCCCCCCCCC--ceeeee-eEEEEEC--CeEEEEEEEeCCCccccc------------
Q 036449            6 FIKCVTVGDGAVGKTCLLISYTSNTFPTDYVP--TVFDNF-SANVVVN--GSTVNLGLWDTAGQEDYN------------   68 (197)
Q Consensus         6 ~~~i~v~G~~~~GKstli~~~~~~~~~~~~~~--~~~~~~-~~~~~~~--~~~~~~~i~D~~G~~~~~------------   68 (197)
                      .++++++|++|+|||||++.+.+..+......  ...... ...+...  +....+.++|++|.....            
T Consensus        42 i~~vaLvG~nGaGKSTLln~L~G~~l~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~ltv~D~~~~g~~~~~~~~~~~i~~~  121 (427)
T 2qag_B           42 CFNILCVGETGLGKSTLMDTLFNTKFEGEPATHTQPGVQLQSNTYDLQESNVRLKLTIVSTVGFGDQINKEDSYKPIVEF  121 (427)
T ss_dssp             EEEEEEECSTTSSSHHHHHHHHTSCC-------CCSSCEEEEEEEEEEC--CEEEEEEEEEECCCC-CCHHHHSHHHHHH
T ss_pred             eeEEEEECCCCCCHHHHHHHHhCccccCCcCCCCCccceEeeEEEEeecCccccccchhhhhhhhhccccchhhhHHHHH
Confidence            36799999999999999999987654321111  011111 1122222  222367899999843210            


Q ss_pred             -------------cccc--cCcCCC--cE-EEEEEeCCCchhHHHHHHHHHHHHhhhCCCCCEEEEeeCCcccCC
Q 036449           69 -------------RLRP--LSYRGA--DV-FILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLRDD  125 (197)
Q Consensus        69 -------------~~~~--~~~~~~--~~-~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~~~ivv~nK~D~~~~  125 (197)
                                   ....  .....+  |+ ++++.|...+.+..++  .++..+.   .+.|+|+|.||+|....
T Consensus       122 i~~q~~~~L~e~~~i~r~l~~~~d~rVh~~v~fI~d~~~~l~~~Di--eilk~L~---~~~~vI~Vi~KtD~Lt~  191 (427)
T 2qag_B          122 IDAQFEAYLQEELKIRRVLHTYHDSRIHVCLYFIAPTGHSLKSLDL--VTMKKLD---SKVNIIPIIAKADAISK  191 (427)
T ss_dssp             HHHHHHHHHHHC--CCCCCCCSCC--CCEEEEEECCCC---CHHHH--HHHHHTC---SCSEEEEEESCGGGSCH
T ss_pred             HHHHHHHHHHHHHhhhhhhcccccccccEEEEEEeCCCCCCCHHHH--HHHHHHh---hCCCEEEEEcchhccch
Confidence                         0000  012233  33 5566676655444443  3444443   47899999999998653

>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}

Probab=98.92  E-value=1.4e-10  Score=88.53  Aligned_cols=138  Identities=11%  Similarity=0.095  Sum_probs=77.5

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhhC------CC-CCCCCCceeeeeeEEEEECCeEEEEEEEeCCCccccccc----cc---
Q 036449            7 IKCVTVGDGAVGKTCLLISYTSN------TF-PTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQEDYNRL----RP---   72 (197)
Q Consensus         7 ~~i~v~G~~~~GKstli~~~~~~------~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~----~~---   72 (197)
                      .+|+++|.+|+|||||+|++.+.      .. ....+.++..  .....++..   +.++||||.......    ..   
T Consensus       163 ~~i~~vG~~nvGKStliN~L~~~~~~~~~~~~~~~~~gtT~~--~~~~~~~~~---~~liDtPG~~~~~~~~~~l~~~~l  237 (369)
T 3ec1_A          163 GDVYVVGCTNVGKSTFINRIIEEATGKGNVITTSYFPGTTLD--MIEIPLESG---ATLYDTPGIINHHQMAHFVDARDL  237 (369)
T ss_dssp             SCEEEECCTTSSHHHHHHHHHHHHHHTTCCCEEEECTTSSCE--EEEEECSTT---CEEEECCSCCCCSSGGGGSCTTTH
T ss_pred             CcEEEEcCCCCchHHHHHHHHhhccCCccceeecCCCCeEEe--eEEEEeCCC---eEEEeCCCcCcHHHHHHHHhHHHH
Confidence            57999999999999999999875      12 1122222211  112223322   679999995322211    11   


Q ss_pred             -cC--cCCCcEEEEEEeCCCchhHHHHHHHHHHHHhhhCCCCCEEEEeeCCcccCCcccccCCCCCCcccHHHHHHHHHH
Q 036449           73 -LS--YRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPISTAQGEELRKL  149 (197)
Q Consensus        73 -~~--~~~~~~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~  149 (197)
                       .+  ....+.++++++......+..+  ..+..+..  .+.|+++++||.|..+...           .......+.+.
T Consensus       238 ~~~~~~~~i~~~~~~l~~~~~~~~g~l--~~l~~l~~--~~~~~~~v~~k~d~~~~~~-----------~~~~~~~~~~~  302 (369)
T 3ec1_A          238 KIITPKREIHPRVYQLNEGQTLFFGGL--ARLDYIKG--GRRSFVCYMANELTVHRTK-----------LEKADSLYANQ  302 (369)
T ss_dssp             HHHSCSSCCCCEEEEECTTEEEEETTT--EEEEEEES--SSEEEEEEECTTSCEEEEE-----------GGGHHHHHHHH
T ss_pred             HHHhcccccCceEEEEcCCceEEECCE--EEEEEccC--CCceEEEEecCCccccccc-----------HHHHHHHHHHh
Confidence             11  1567899999987432111111  11111222  3689999999999976543           12233455566


Q ss_pred             hCCCceEEeccCCCCC
Q 036449          150 IGAPAYIECSSKTQQN  165 (197)
Q Consensus       150 ~~~~~~~~~sa~~~~~  165 (197)
                      .+. .+.+.++.+.++
T Consensus       303 ~g~-~l~p~~~~~~~~  317 (369)
T 3ec1_A          303 LGE-LLSPPSKRYAAE  317 (369)
T ss_dssp             BTT-TBCSSCGGGTTT
T ss_pred             cCC-ccCCCCchhhhh
Confidence            665 565556554433

>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A

Probab=98.88  E-value=1e-09  Score=86.67  Aligned_cols=152  Identities=13%  Similarity=0.048  Sum_probs=83.6

Q ss_pred             CceeEEEEEcCCCCCHHHHHHHHhh------CCC----CCCCCCcee-------eee-eEEEE-----------------
Q 036449            4 SRFIKCVTVGDGAVGKTCLLISYTS------NTF----PTDYVPTVF-------DNF-SANVV-----------------   48 (197)
Q Consensus         4 ~~~~~i~v~G~~~~GKstli~~~~~------~~~----~~~~~~~~~-------~~~-~~~~~-----------------   48 (197)
                      .+...|+++|.+||||||+++++..      ...    .+.+.+...       ... ...+.                 
T Consensus        99 ~~~~vI~ivG~~GvGKTTl~~kLA~~l~~~G~kVllVd~D~~r~aa~~qL~~~~~~~~i~v~~~~~~~dp~~i~~~al~~  178 (504)
T 2j37_W           99 GKQNVIMFVGLQGSGKTTTCSKLAYYYQRKGWKTCLICADTFRAGAFDQLKQNATKARIPFYGSYTEMDPVIIASEGVEK  178 (504)
T ss_dssp             S--EEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEECCSSSHHHHHHHHHHHHHTCCEEECCCCSCHHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEeccccchhHHHHHHHHhhccCceEEccCCCCCHHHHHHHHHHH
Confidence            3456899999999999999988872      211    011111100       000 00000                 


Q ss_pred             ECCeEEEEEEEeCCCcccccc-ccc---cC--cCCCcEEEEEEeCCCchhHHHHHHHHHHHHhhhCCCCCE-EEEeeCCc
Q 036449           49 VNGSTVNLGLWDTAGQEDYNR-LRP---LS--YRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPI-ILVGTKLD  121 (197)
Q Consensus        49 ~~~~~~~~~i~D~~G~~~~~~-~~~---~~--~~~~~~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~~~-ivv~nK~D  121 (197)
                      .....+.+.|+||||...... ++.   ..  ...+|.+++|+|.+........    ...+...   .|+ .+|+||.|
T Consensus       179 ~~~~~~DvvIIDTpG~~~~~~~l~~el~~~~~~i~pd~vllVvDa~~g~~~~~~----a~~~~~~---~~i~gvVlNK~D  251 (504)
T 2j37_W          179 FKNENFEIIIVDTSGRHKQEDSLFEEMLQVANAIQPDNIVYVMDASIGQACEAQ----AKAFKDK---VDVASVIVTKLD  251 (504)
T ss_dssp             HHHTTCCEEEEEECCCCTTCHHHHHHHHHHHHHHCCSEEEEEEETTCCTTHHHH----HHHHHHH---HCCCCEEEECTT
T ss_pred             HHHCCCcEEEEeCCCCcccchhHHHHHHHHHhhhcCceEEEEEeccccccHHHH----HHHHHhh---cCceEEEEeCCc
Confidence            000225677999999653211 110   00  1268999999999876542222    2233322   564 88999999


Q ss_pred             ccCCcccccCCCCCCcccHHHHHHHHHHhCC-----------------CceEEeccCCCCC-HHHHHHHHHHH
Q 036449          122 LRDDKQFFIDHPGAVPISTAQGEELRKLIGA-----------------PAYIECSSKTQQN-VKAVFDAAIRV  176 (197)
Q Consensus       122 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------------~~~~~~sa~~~~~-i~~l~~~i~~~  176 (197)
                      ......              .+.......+.                 .+.+.+|+..|.| +.++++++.+.
T Consensus       252 ~~~~~g--------------~~l~~~~~~g~PI~fig~ge~~~dl~~f~~~~~vsal~G~Gdi~~Lie~i~e~  310 (504)
T 2j37_W          252 GHAKGG--------------GALSAVAATKSPIIFIGTGEHIDDFEPFKTQPFISKLLGMGDIEGLIDKVNEL  310 (504)
T ss_dssp             SCCCCT--------------HHHHHHHHHCCCEEEEECSSSTTCEECCTHHHHHHCCCTTTTTTTTHHHHTTT
T ss_pred             cccchH--------------HHHHHHHHhCCCeEEeccccchhhhhccCcceeeehhcCCCcHHHHHHHHHHH
Confidence            864321              11122233333                 1223478999988 99999998766

>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*

Probab=98.86  E-value=7.2e-08  Score=74.42  Aligned_cols=168  Identities=13%  Similarity=0.117  Sum_probs=85.8

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHhhCCCCCCCCCce-eee--eeEEEEECCeEEEEEEEeCCCccccc-----cccccCcCC
Q 036449            6 FIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTV-FDN--FSANVVVNGSTVNLGLWDTAGQEDYN-----RLRPLSYRG   77 (197)
Q Consensus         6 ~~~i~v~G~~~~GKstli~~~~~~~~~~~~~~~~-~~~--~~~~~~~~~~~~~~~i~D~~G~~~~~-----~~~~~~~~~   77 (197)
                      ...++++|++|+|||||++.+.+......-..+. +..  ....+......-.+.+||++|.....     .+....+..
T Consensus        69 ~~~valvG~nGaGKSTLln~L~Gl~~p~~GsI~~~g~~~t~~~~v~q~~~~~~ltv~D~~g~~~~~~~~~~~L~~~~L~~  148 (413)
T 1tq4_A           69 VLNVAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVVEVTMERHPYKHPNIPNVVFWDLPGIGSTNFPPDTYLEKMKFYE  148 (413)
T ss_dssp             CEEEEEEECTTSSHHHHHHHHHTCCTTSTTSCCCCC----CCCEEEECSSCTTEEEEECCCGGGSSCCHHHHHHHTTGGG
T ss_pred             CeEEEEECCCCCcHHHHHHHHhCCCCccCceEEECCeecceeEEeccccccCCeeehHhhcccchHHHHHHHHHHcCCCc
Confidence            3579999999999999999998743221111111 000  00111111111146799999853211     111112333


Q ss_pred             CcEEEEEEeCCCchhHHHHHHHHHHHHhhhCCCCCEEEEeeCCcccCCcccc--cCCCCCCcccHHHHHHHH----HHhC
Q 036449           78 ADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLRDDKQFF--IDHPGAVPISTAQGEELR----KLIG  151 (197)
Q Consensus        78 ~~~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~~~ivv~nK~D~~~~~~~~--~~~~~~~~~~~~~~~~~~----~~~~  151 (197)
                      .+.+++ ++...++. +.+  .+...+...  +.|+++|.||.|+.--+++.  .+.. ....-.+..+++.    ...+
T Consensus       149 ~~~~~~-lS~G~~~k-qrv--~la~aL~~~--~~p~~lV~tkpdlllLDEPtsgLD~~-~~~~l~~~l~~l~~~~l~~~g  221 (413)
T 1tq4_A          149 YDFFII-ISATRFKK-NDI--DIAKAISMM--KKEFYFVRTKVDSDITNEADGEPQTF-DKEKVLQDIRLNCVNTFRENG  221 (413)
T ss_dssp             CSEEEE-EESSCCCH-HHH--HHHHHHHHT--TCEEEEEECCHHHHHHHHHTTCCTTC-CHHHHHHHHHHHHHHHHHHTT
T ss_pred             cCCeEE-eCCCCccH-HHH--HHHHHHHhc--CCCeEEEEecCcccccCcccccCCHH-HHHHHHHHHHHHHHHHHHhcC
Confidence            455554 66653221 111  233444443  68999999999974211100  0000 0111122233332    1222


Q ss_pred             --CCceEEecc--CCCCCHHHHHHHHHHHHcCC
Q 036449          152 --APAYIECSS--KTQQNVKAVFDAAIRVVLQP  180 (197)
Q Consensus       152 --~~~~~~~sa--~~~~~i~~l~~~i~~~~~~~  180 (197)
                        ....+.+|+  .++.|++++.+.+.+.+...
T Consensus       222 ~~~~~iiliSsh~l~~~~~e~L~d~I~~~Lpeg  254 (413)
T 1tq4_A          222 IAEPPIFLLSNKNVCHYDFPVLMDKLISDLPIY  254 (413)
T ss_dssp             CSSCCEEECCTTCTTSTTHHHHHHHHHHHSCGG
T ss_pred             CCCCcEEEEecCcCCccCHHHHHHHHHHhCccc
Confidence              235788999  55667999999999877554

>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}

Probab=98.81  E-value=2.4e-10  Score=87.22  Aligned_cols=111  Identities=10%  Similarity=0.095  Sum_probs=62.5

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhhCCCC--------CCCCCceeeeeeEEEEECCeEEEEEEEeCCCcccccccc----c--
Q 036449            7 IKCVTVGDGAVGKTCLLISYTSNTFP--------TDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQEDYNRLR----P--   72 (197)
Q Consensus         7 ~~i~v~G~~~~GKstli~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~----~--   72 (197)
                      .+|+++|.+|+|||||+|++.+....        ...+.++..  .....++..   +.++||||......+.    .  
T Consensus       161 ~~i~~vG~~nvGKStliN~L~~~~~~~~~~~~~~~~~~gtT~~--~~~~~~~~~---~~liDtPG~~~~~~~~~~l~~~~  235 (368)
T 3h2y_A          161 KDVYVVGCTNVGKSTFINRMIKEFSDETENVITTSHFPGTTLD--LIDIPLDEE---SSLYDTPGIINHHQMAHYVGKQS  235 (368)
T ss_dssp             SCEEEEEBTTSSHHHHHHHHHHHHTTSCSSCCEEECCC----C--EEEEESSSS---CEEEECCCBCCTTSGGGGSCHHH
T ss_pred             ceEEEecCCCCChhHHHHHHHhhhccccccceecCCCCCeecc--eEEEEecCC---eEEEeCCCcCcHHHHHHHhhHHH
Confidence            57999999999999999999875311        111222211  112223322   6799999963322111    0  


Q ss_pred             ----cCcCCCcEEEEEEeCCCchhHHHHHHHHHHHHhhhCCCCCEEEEeeCCcccCCc
Q 036449           73 ----LSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLRDDK  126 (197)
Q Consensus        73 ----~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~~~ivv~nK~D~~~~~  126 (197)
                          ......+.+++++|.........+  ..+..+..  .+.|+++++||.|..+..
T Consensus       236 l~~~~~~~~i~~~~~~l~~~~~~~~g~l--~~~d~l~~--~~~~~~~v~nk~d~~~~~  289 (368)
T 3h2y_A          236 LKLITPTKEIKPMVFQLNEEQTLFFSGL--ARFDYVSG--GRRAFTCHFSNRLTIHRT  289 (368)
T ss_dssp             HHHHSCSSCCCCEEEEECTTEEEEETTT--EEEEEEES--SSEEEEEEECTTSCEEEE
T ss_pred             HHHhccccccCceEEEEcCCCEEEEcce--EEEEEecC--CCceEEEEecCccccccc
Confidence                013457788888886322111111  11122222  268999999999997654

>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8

Probab=98.80  E-value=4.7e-09  Score=77.28  Aligned_cols=101  Identities=17%  Similarity=0.109  Sum_probs=68.1

Q ss_pred             EEeCCCcc-ccccccccCcCCCcEEEEEEeCCCchhHHH--HHHHHHHHHhhhCCCCCEEEEeeCCcccCCcccccCCCC
Q 036449           58 LWDTAGQE-DYNRLRPLSYRGADVFILAFSLISKASYEN--VSKKWIPELKHYAPGVPIILVGTKLDLRDDKQFFIDHPG  134 (197)
Q Consensus        58 i~D~~G~~-~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~--~~~~~~~~i~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~  134 (197)
                      +-..|||. .........+..+|+++.|+|+.++.+...  + ..|+       .+.|.++|+||+|+.+..        
T Consensus         3 i~w~PGhm~ka~~~~~~~l~~aDvVl~VvDAr~p~~~~~~~l-~~~l-------~~kp~ilVlNK~DL~~~~--------   66 (282)
T 1puj_A            3 IQWFPGHMAKARREVTEKLKLIDIVYELVDARIPMSSRNPMI-EDIL-------KNKPRIMLLNKADKADAA--------   66 (282)
T ss_dssp             ------CTTHHHHHHHHHGGGCSEEEEEEETTSTTTTSCHHH-HHHC-------SSSCEEEEEECGGGSCHH--------
T ss_pred             CcCCchHHHHHHHHHHHHHhhCCEEEEEEeCCCCCccCCHHH-HHHH-------CCCCEEEEEECcccCCHH--------
Confidence            44678885 334455557889999999999999877642  3 3332       478999999999996521        


Q ss_pred             CCcccHHHHHHHHHHhCCCceEEeccCCCCCHHHHHHHHHHHHcC
Q 036449          135 AVPISTAQGEELRKLIGAPAYIECSSKTQQNVKAVFDAAIRVVLQ  179 (197)
Q Consensus       135 ~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~l~~~i~~~~~~  179 (197)
                          ..+...++.+..+. +++.+||+++.|++++++.+.+.+..
T Consensus        67 ----~~~~~~~~~~~~g~-~~i~iSA~~~~gi~~L~~~i~~~l~~  106 (282)
T 1puj_A           67 ----VTQQWKEHFENQGI-RSLSINSVNGQGLNQIVPASKEILQE  106 (282)
T ss_dssp             ----HHHHHHHHHHTTTC-CEEECCTTTCTTGGGHHHHHHHHHHH
T ss_pred             ----HHHHHHHHHHhcCC-cEEEEECCCcccHHHHHHHHHHHHHH
Confidence                11222334444566 89999999999999999988877653

>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8

Probab=98.60  E-value=5.8e-08  Score=71.46  Aligned_cols=57  Identities=26%  Similarity=0.298  Sum_probs=35.2

Q ss_pred             CceeEEEEEcCCCCCHHHHHHHHhhCCCC--CCCCCceeeeeeEEEEECCeEEEEEEEeCCCcc
Q 036449            4 SRFIKCVTVGDGAVGKTCLLISYTSNTFP--TDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQE   65 (197)
Q Consensus         4 ~~~~~i~v~G~~~~GKstli~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~   65 (197)
                      .+.++|+++|.+|+|||||+|++.+....  ...+.++...  ..+..+.   .+.+|||||..
T Consensus       118 ~~~~~v~~vG~~nvGKSsliN~l~~~~~~~~~~~~g~T~~~--~~~~~~~---~~~l~DtpG~~  176 (282)
T 1puj_A          118 PRAIRALIIGIPNVGKSTLINRLAKKNIAKTGDRPGITTSQ--QWVKVGK---ELELLDTPGIL  176 (282)
T ss_dssp             CCCEEEEEEESTTSSHHHHHHHHHTSCCC--------------CCEEETT---TEEEEECCCCC
T ss_pred             CCCceEEEEecCCCchHHHHHHHhcCceeecCCCCCeeeee--EEEEeCC---CEEEEECcCcC
Confidence            35689999999999999999999976532  2222222111  1222332   36799999963

>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*

Probab=98.55  E-value=4e-08  Score=71.53  Aligned_cols=56  Identities=13%  Similarity=0.073  Sum_probs=34.0

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhhCCCCCCCCCceeeeee-EEEEECCeEEEEEEEeCCCccc
Q 036449            7 IKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFS-ANVVVNGSTVNLGLWDTAGQED   66 (197)
Q Consensus         7 ~~i~v~G~~~~GKstli~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~i~D~~G~~~   66 (197)
                      ++++++|.+|+|||||++++.+...... .++.+.+.. ..+..+.   .+++|||||...
T Consensus       100 ~~v~~vG~~~vGKSslin~l~~~~~~~~-~~~~g~T~~~~~~~~~~---~~~l~DtpG~~~  156 (262)
T 3cnl_A          100 ARVLIVGVPNTGKSTIINKLKGKRASSV-GAQPGITKGIQWFSLEN---GVKILDTPGILY  156 (262)
T ss_dssp             CEEEEEESTTSSHHHHHHHHHTTCC-----------CCSCEEECTT---SCEEESSCEECC
T ss_pred             hheEEeCCCCCCHHHHHHHHhccccccc-CCCCCCccceEEEEeCC---CEEEEECCCccc
Confidence            5899999999999999999997664221 111111111 1122222   467999999753

>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*

Probab=98.47  E-value=1.7e-07  Score=75.33  Aligned_cols=63  Identities=21%  Similarity=0.118  Sum_probs=39.1

Q ss_pred             CceeEEEEEcCCCCCHHHHHHHHhhCCCCCCCCCceeeeeeEEEEE-----CCeEEEEEEEeCCCccc
Q 036449            4 SRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVV-----NGSTVNLGLWDTAGQED   66 (197)
Q Consensus         4 ~~~~~i~v~G~~~~GKstli~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~i~D~~G~~~   66 (197)
                      .+.++|+|+|.+|+|||||+|++.+....-...+++.........+     ......+.++||||...
T Consensus        36 ~~~~~VaivG~pnvGKStLiN~L~g~~~~~~~~~tt~~~T~gi~~~~~~~~~~~~~~i~LiDTpGi~~  103 (592)
T 1f5n_A           36 QPMVVVAIVGLYRTGKSYLMNKLAGKKKGFSLGSTVQSHTKGIWMWCVPHPKKPGHILVLLDTEGLGD  103 (592)
T ss_dssp             SBEEEEEEEEBTTSSHHHHHHHHTTCSSCSCCCCSSSCCCCSEEEEEEECSSSTTCEEEEEEECCBCC
T ss_pred             CCCcEEEEECCCCCCHHHHHHhHcCCCCccccCCCCCCceeEEEEeecccccCCCceEEEecCCCcCc
Confidence            4678999999999999999999998653212222221111111111     11224567999999654

>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B

Probab=98.38  E-value=2e-07  Score=72.50  Aligned_cols=64  Identities=20%  Similarity=0.157  Sum_probs=38.7

Q ss_pred             EEEEEEeCCCccccc-----cc-cccCcCCCcEEEEEEeCCCchhHHHHHHHHHHHHhhhCCCC-C-EEEEeeCCcccC
Q 036449           54 VNLGLWDTAGQEDYN-----RL-RPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGV-P-IILVGTKLDLRD  124 (197)
Q Consensus        54 ~~~~i~D~~G~~~~~-----~~-~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~-~-~ivv~nK~D~~~  124 (197)
                      +.+.++||||.....     .+ ....+..+|.+++|+|.+....   . ......+.   +.. | ..+|.||.|...
T Consensus       181 ~D~vIIDT~G~~~~~~~l~~~l~~i~~~~~~d~vllVvda~~g~~---~-~~~~~~~~---~~~~~i~gvVlnK~D~~~  252 (432)
T 2v3c_C          181 ADVLIIDTAGRHKEEKGLLEEMKQIKEITNPDEIILVIDGTIGQQ---A-GIQAKAFK---EAVGEIGSIIVTKLDGSA  252 (432)
T ss_dssp             CSEEEEECCCSCSSHHHHHHHHHHTTSSSCCSEEEEEEEGGGGGG---H-HHHHHHHH---TTSCSCEEEEEECSSSCS
T ss_pred             CCEEEEcCCCCccccHHHHHHHHHHHHHhcCcceeEEeeccccHH---H-HHHHHHHh---hcccCCeEEEEeCCCCcc
Confidence            456799999964321     11 0112336899999999876642   2 11222222   235 5 789999999854

>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*

Probab=98.36  E-value=1.5e-07  Score=68.51  Aligned_cols=94  Identities=14%  Similarity=0.056  Sum_probs=60.5

Q ss_pred             CCCcccc-ccccccCcCCCcEEEEEEeCCCchhHHHHHHHHHHHHhhhCCCCCEEEEeeCCcccCCcccccCCCCCCccc
Q 036449           61 TAGQEDY-NRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPIS  139 (197)
Q Consensus        61 ~~G~~~~-~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~  139 (197)
                      .|||... .......+.++|+++.|+|+.++.+.....-.++        +.|.++|+||+|+.+...            
T Consensus         4 ~PGhm~ka~~~~~~~l~~~D~vl~VvDar~P~~~~~~~l~ll--------~k~~iivlNK~DL~~~~~------------   63 (262)
T 3cnl_A            4 YPGHIEKAKRQIKDLLRLVNTVVEVRDARAPFATSAYGVDFS--------RKETIILLNKVDIADEKT------------   63 (262)
T ss_dssp             -----CCTTHHHHHHHTTCSEEEEEEETTSTTTTSCTTSCCT--------TSEEEEEEECGGGSCHHH------------
T ss_pred             CchHHHHHHHHHHHHHhhCCEEEEEeeCCCCCcCcChHHHhc--------CCCcEEEEECccCCCHHH------------
Confidence            5777532 2344556789999999999998876643200121        689999999999965211            


Q ss_pred             HHHHHHHHHHhCCCceEEeccCCCCCHHHHHHHHHHH
Q 036449          140 TAQGEELRKLIGAPAYIECSSKTQQNVKAVFDAAIRV  176 (197)
Q Consensus       140 ~~~~~~~~~~~~~~~~~~~sa~~~~~i~~l~~~i~~~  176 (197)
                      .+....+.+..+. ++ .+||+++.|++++++.+.+.
T Consensus        64 ~~~~~~~~~~~g~-~v-~iSa~~~~gi~~L~~~l~~~   98 (262)
T 3cnl_A           64 TKKWVEFFKKQGK-RV-ITTHKGEPRKVLLKKLSFDR   98 (262)
T ss_dssp             HHHHHHHHHHTTC-CE-EECCTTSCHHHHHHHHCCCT
T ss_pred             HHHHHHHHHHcCC-eE-EEECCCCcCHHHHHHHHHHh
Confidence            1222334445566 67 99999999999998876543

>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}

Probab=98.28  E-value=1.1e-06  Score=68.16  Aligned_cols=86  Identities=17%  Similarity=0.070  Sum_probs=48.8

Q ss_pred             EEEEEEeCCCcccccc-----ccc-cCcCCCcEEEEEEeCCCchhHHHHHHHHHHHHhhhCCCCCEEEEeeCCcccCCcc
Q 036449           54 VNLGLWDTAGQEDYNR-----LRP-LSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLRDDKQ  127 (197)
Q Consensus        54 ~~~~i~D~~G~~~~~~-----~~~-~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~~~ivv~nK~D~~~~~~  127 (197)
                      +.+.++||||-.....     +.. .....+|.+++|+|.+........    ...+...  -.+..+|.||.|..... 
T Consensus       183 ~DvVIIDTaGrl~~d~~lm~el~~i~~~~~pd~vlLVvDA~~gq~a~~~----a~~f~~~--~~i~gVIlTKlD~~~~g-  255 (443)
T 3dm5_A          183 VDIIIVDTAGRHKEDKALIEEMKQISNVIHPHEVILVIDGTIGQQAYNQ----ALAFKEA--TPIGSIIVTKLDGSAKG-  255 (443)
T ss_dssp             CSEEEEECCCCSSCCHHHHHHHHHHHHHHCCSEEEEEEEGGGGGGHHHH----HHHHHHS--CTTEEEEEECCSSCSSH-
T ss_pred             CCEEEEECCCcccchHHHHHHHHHHHHhhcCceEEEEEeCCCchhHHHH----HHHHHhh--CCCeEEEEECCCCcccc-
Confidence            5577999999432110     100 112357899999999876443222    2333333  23567899999986532 


Q ss_pred             cccCCCCCCcccHHHHHHHHHHhCCCceEEecc
Q 036449          128 FFIDHPGAVPISTAQGEELRKLIGAPAYIECSS  160 (197)
Q Consensus       128 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa  160 (197)
                                   -.+.......+. |+..++.
T Consensus       256 -------------G~~ls~~~~~g~-PI~fig~  274 (443)
T 3dm5_A          256 -------------GGALSAVAATGA-PIKFIGT  274 (443)
T ss_dssp             -------------HHHHHHHHTTCC-CEEEEEC
T ss_pred             -------------cHHHHHHHHHCC-CEEEEEc
Confidence                         223344455666 6655554

>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8

Probab=98.26  E-value=9.7e-07  Score=65.51  Aligned_cols=91  Identities=20%  Similarity=0.209  Sum_probs=61.4

Q ss_pred             cccccCcCCCcEEEEEEeCCCchhHHHHHHHHHHHHhhhCCCCCEEEEeeCCcccCCcccccCCCCCCcc--cHHHHHHH
Q 036449           69 RLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPI--STAQGEEL  146 (197)
Q Consensus        69 ~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~--~~~~~~~~  146 (197)
                      .+....+.++|.+++|+|+.++.........++......  ++|.++|+||+|+.+...          .  ..+...++
T Consensus        78 ~l~R~~~anvD~v~~V~~~~~p~~~~~~i~r~L~~~~~~--~~~~vivlnK~DL~~~~~----------~~~~~~~~~~~  145 (307)
T 1t9h_A           78 ELIRPPICNVDQAVLVFSAVQPSFSTALLDRFLVLVEAN--DIQPIICITKMDLIEDQD----------TEDTIQAYAED  145 (307)
T ss_dssp             EETTTTEECCCEEEEEEESTTTTCCHHHHHHHHHHHHTT--TCEEEEEEECGGGCCCHH----------HHHHHHHHHHH
T ss_pred             hhhHHHHHhCCEEEEEEeCCCCCCCHHHHHHHHHHHHHC--CCCEEEEEECCccCchhh----------hHHHHHHHHHH
Confidence            344456889999999999997754433335665554444  789999999999976421          0  01222334


Q ss_pred             HHHhCCCceEEeccCCCCCHHHHHHH
Q 036449          147 RKLIGAPAYIECSSKTQQNVKAVFDA  172 (197)
Q Consensus       147 ~~~~~~~~~~~~sa~~~~~i~~l~~~  172 (197)
                      .+..+. +.+.+||.++.|+++++..
T Consensus       146 y~~~g~-~v~~~sa~~~~g~~~L~~~  170 (307)
T 1t9h_A          146 YRNIGY-DVYLTSSKDQDSLADIIPH  170 (307)
T ss_dssp             HHHHTC-CEEECCHHHHTTCTTTGGG
T ss_pred             HHhCCC-eEEEEecCCCCCHHHHHhh
Confidence            344576 8899999998887776554

>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B

Probab=98.10  E-value=3.1e-06  Score=68.73  Aligned_cols=24  Identities=21%  Similarity=0.354  Sum_probs=21.2

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhhCC
Q 036449            7 IKCVTVGDGAVGKTCLLISYTSNT   30 (197)
Q Consensus         7 ~~i~v~G~~~~GKstli~~~~~~~   30 (197)
                      ..|+|+|++|||||||++.+.+-.
T Consensus        46 p~iaIvG~nGsGKSTLL~~I~Gl~   69 (608)
T 3szr_A           46 PAIAVIGDQSSGKSSVLEALSGVA   69 (608)
T ss_dssp             CCEECCCCTTSCHHHHHHHHHSCC
T ss_pred             CeEEEECCCCChHHHHHHHHhCCC
Confidence            359999999999999999998764

>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F

Probab=97.99  E-value=2.5e-06  Score=63.19  Aligned_cols=90  Identities=14%  Similarity=0.073  Sum_probs=51.9

Q ss_pred             EEEEEEeCCCccc--ccc-ccc-----cCcCCCcEEEEEEeCCCchhHHHHHHHHHHHHhhhCCCCC-EEEEeeCCcccC
Q 036449           54 VNLGLWDTAGQED--YNR-LRP-----LSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVP-IILVGTKLDLRD  124 (197)
Q Consensus        54 ~~~~i~D~~G~~~--~~~-~~~-----~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~~-~ivv~nK~D~~~  124 (197)
                      +.+.++||||...  ... +..     .....+|.+++|+|.+......    .....+..   ..+ ..+|.||.|...
T Consensus       181 ~D~ViIDTpg~~~~~~~~~l~~el~~i~~~~~~d~vllVvda~~g~~~~----~~~~~~~~---~~~i~gvVlnk~D~~~  253 (297)
T 1j8m_F          181 MEIIIVDTAGRHGYGEEAALLEEMKNIYEAIKPDEVTLVIDASIGQKAY----DLASKFNQ---ASKIGTIIITKMDGTA  253 (297)
T ss_dssp             CSEEEEECCCSCCTTCHHHHHHHHHHHHHHHCCSEEEEEEEGGGGGGHH----HHHHHHHH---TCTTEEEEEECGGGCT
T ss_pred             CCEEEEeCCCCcccccHHHHHHHHHHHHHHhcCCEEEEEeeCCchHHHH----HHHHHHHh---hCCCCEEEEeCCCCCc
Confidence            4577999999755  211 110     1234689999999987542221    12222322   355 678999999853


Q ss_pred             CcccccCCCCCCcccHHHHHHHHHHhCCCceEEeccCCCCCHH
Q 036449          125 DKQFFIDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQQNVK  167 (197)
Q Consensus       125 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~  167 (197)
                      .              ...+.......+. |+..++  .|++++
T Consensus       254 ~--------------~g~~~~~~~~~~~-pi~~i~--~Ge~v~  279 (297)
T 1j8m_F          254 K--------------GGGALSAVAATGA-TIKFIG--TGEKID  279 (297)
T ss_dssp             T--------------HHHHHHHHHTTTC-CEEEEE--CSSSTT
T ss_pred             c--------------hHHHHHHHHHHCc-CEEEEe--CCCChh
Confidence            2              1234456667776 666655  455554

>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A

Probab=97.98  E-value=2.5e-07  Score=72.90  Aligned_cols=108  Identities=16%  Similarity=0.006  Sum_probs=61.2

Q ss_pred             ceeEEEEEcCCCCCHHHHHHHHhhCCCCCCCCCceeeeee-EEEEECCeEEEEEEEeCCCcccc--cccc--------cc
Q 036449            5 RFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFS-ANVVVNGSTVNLGLWDTAGQEDY--NRLR--------PL   73 (197)
Q Consensus         5 ~~~~i~v~G~~~~GKstli~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~i~D~~G~~~~--~~~~--------~~   73 (197)
                      ..+.|+++|.+|+||||+.+++...-... ..++...... ......+......+||..|.+.+  +..+        ..
T Consensus        38 ~~~~IvlvGlpGsGKSTia~~La~~l~~~-~~~t~~~~~d~~r~~~~g~~~~~~ifd~~g~~~~r~re~~~~~~l~~~~~  116 (469)
T 1bif_A           38 CPTLIVMVGLPARGKTYISKKLTRYLNFI-GVPTREFNVGQYRRDMVKTYKSFEFFLPDNEEGLKIRKQCALAALNDVRK  116 (469)
T ss_dssp             CCEEEEEECCTTSSHHHHHHHHHHHHHHT-TCCEEEEEHHHHHHHHHCSCCCGGGGCTTCHHHHHHHHHHHHHHHHHHHH
T ss_pred             CcEEEEEECCCCCCHHHHHHHHHHHHhcc-CCCceEEecchhhhhhccCCCcccccCCCCHHHHHHHHHHHHHHHHHHHH
Confidence            45789999999999999998887532111 1111110000 00000111123458999987432  2222        34


Q ss_pred             CcCCCcEEEEEEeCCCchhHHHHHHHHHHHHhhhCCCCCEEEEe
Q 036449           74 SYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVG  117 (197)
Q Consensus        74 ~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~~~ivv~  117 (197)
                      ++...++.++|+|.++. +.+.. ..|...+...  +.+++.+-
T Consensus       117 ~l~~~~G~~vV~D~tn~-~~~~R-~~~~~~~~~~--~~~vv~l~  156 (469)
T 1bif_A          117 FLSEEGGHVAVFDATNT-TRERR-AMIFNFGEQN--GYKTFFVE  156 (469)
T ss_dssp             HHHTTCCSEEEEESCCC-SHHHH-HHHHHHHHHH--TCEEEEEE
T ss_pred             HHHhCCCCEEEEeCCCC-CHHHH-HHHHHHHHhc--CCcEEEEE
Confidence            45557788999999988 44444 5777766665  34454443

>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V

Probab=97.94  E-value=8.5e-05  Score=56.24  Aligned_cols=86  Identities=20%  Similarity=0.246  Sum_probs=55.7

Q ss_pred             CcCCCcEEEEEEeCCCchhHHHHHHHHHHHHhhhCCCCCEEEEeeCCcccCCcccccCCCCCCcc-cHHHHHHHHHHhCC
Q 036449           74 SYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPI-STAQGEELRKLIGA  152 (197)
Q Consensus        74 ~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~  152 (197)
                      .+.++|.+++|... ++.........++......  +.|.++|+||+|+.+...          . ..+.........|.
T Consensus       127 i~anvD~v~iv~a~-~P~~~~~~i~r~L~~a~~~--~~~~iivlNK~DL~~~~~----------~~~~~~~~~~y~~~G~  193 (358)
T 2rcn_A          127 IAANIDQIVIVSAI-LPELSLNIIDRYLVGCETL--QVEPLIVLNKIDLLDDEG----------MDFVNEQMDIYRNIGY  193 (358)
T ss_dssp             EEECCCEEEEEEES-TTTCCHHHHHHHHHHHHHH--TCEEEEEEECGGGCCHHH----------HHHHHHHHHHHHTTTC
T ss_pred             HHhcCCEEEEEEeC-CCCCCHHHHHHHHHHHHhc--CCCEEEEEECccCCCchh----------HHHHHHHHHHHHhCCC
Confidence            46789999988665 4543333335665555545  788999999999965321          0 01112222334566


Q ss_pred             CceEEeccCCCCCHHHHHHHH
Q 036449          153 PAYIECSSKTQQNVKAVFDAA  173 (197)
Q Consensus       153 ~~~~~~sa~~~~~i~~l~~~i  173 (197)
                       +.+.+||.++.|++++...+
T Consensus       194 -~v~~~Sa~~~~gl~~L~~~~  213 (358)
T 2rcn_A          194 -RVLMVSSHTQDGLKPLEEAL  213 (358)
T ss_dssp             -CEEECBTTTTBTHHHHHHHH
T ss_pred             -cEEEEecCCCcCHHHHHHhc
Confidence             78999999999999887653

>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A

Probab=97.93  E-value=1.3e-05  Score=62.15  Aligned_cols=86  Identities=14%  Similarity=0.076  Sum_probs=49.4

Q ss_pred             EEEEEEeCCCccc--cc-----cccc-cCcCCCcEEEEEEeCCCchhHHHHHHHHHHHHhhhCCCCCEEEEeeCCcccCC
Q 036449           54 VNLGLWDTAGQED--YN-----RLRP-LSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLRDD  125 (197)
Q Consensus        54 ~~~~i~D~~G~~~--~~-----~~~~-~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~~~ivv~nK~D~~~~  125 (197)
                      +.+.++||||...  ..     .+.. .....++.+++|+|.+..+.....    ...+...  -.+..+|.||.|....
T Consensus       180 ~DvvIIDTaGr~~~~~d~~lm~el~~i~~~~~pd~vlLVlDa~~gq~a~~~----a~~f~~~--~~~~gVIlTKlD~~a~  253 (433)
T 3kl4_A          180 MDIIIVDTAGRHGYGEETKLLEEMKEMYDVLKPDDVILVIDASIGQKAYDL----ASRFHQA--SPIGSVIITKMDGTAK  253 (433)
T ss_dssp             CSEEEEEECCCSSSCCTTHHHHHHHHHHHHHCCSEEEEEEEGGGGGGGHHH----HHHHHHH--CSSEEEEEECGGGCSC
T ss_pred             CCEEEEECCCCccccCCHHHHHHHHHHHHhhCCcceEEEEeCccchHHHHH----HHHHhcc--cCCcEEEEeccccccc
Confidence            4566999999533  11     0000 011246899999999876433222    2333333  2467899999998643


Q ss_pred             cccccCCCCCCcccHHHHHHHHHHhCCCceEEecc
Q 036449          126 KQFFIDHPGAVPISTAQGEELRKLIGAPAYIECSS  160 (197)
Q Consensus       126 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa  160 (197)
                      -              -.+.......+. |+..++.
T Consensus       254 ~--------------G~als~~~~~g~-Pi~fig~  273 (433)
T 3kl4_A          254 G--------------GGALSAVVATGA-TIKFIGT  273 (433)
T ss_dssp             H--------------HHHHHHHHHHTC-EEEEEEC
T ss_pred             c--------------hHHHHHHHHHCC-CEEEEEC
Confidence            2              223445555676 7666664

>3q5d_A Atlastin-1; G protein, GTPase, GDP/GTP binding, hydrolase; HET: GDP; 2.70A {Homo sapiens} PDB: 3q5e_A* 3qnu_A* 3qof_A*

Probab=97.71  E-value=7e-05  Score=58.37  Aligned_cols=25  Identities=16%  Similarity=0.138  Sum_probs=22.1

Q ss_pred             CceeEEEEEcCCCCCHHHHHHHHhh
Q 036449            4 SRFIKCVTVGDGAVGKTCLLISYTS   28 (197)
Q Consensus         4 ~~~~~i~v~G~~~~GKstli~~~~~   28 (197)
                      .+..-|.|+|++++|||+|+|.+++
T Consensus        65 ~~v~vVsV~G~~~~GKStLLN~llg   89 (447)
T 3q5d_A           65 KEVVAVSVAGAFRKGKSFLMDFMLR   89 (447)
T ss_dssp             SBEEEEEEEESTTSSHHHHHHHHHH
T ss_pred             CceEEEEEECCCCCcHHHHHHHHhh
Confidence            3566799999999999999999985

>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*

Probab=97.60  E-value=4e-05  Score=53.61  Aligned_cols=28  Identities=32%  Similarity=0.285  Sum_probs=21.3

Q ss_pred             CCCCceeEEEEEcCCCCCHHHHHHHHhh
Q 036449            1 MSASRFIKCVTVGDGAVGKTCLLISYTS   28 (197)
Q Consensus         1 m~~~~~~~i~v~G~~~~GKstli~~~~~   28 (197)
                      |...+...|+++|+.|||||||++.+.+
T Consensus         1 ~~~~~~~~i~i~G~~GsGKSTl~~~l~~   28 (211)
T 3asz_A            1 MSAPKPFVIGIAGGTASGKTTLAQALAR   28 (211)
T ss_dssp             ----CCEEEEEEESTTSSHHHHHHHHHH
T ss_pred             CCCCCcEEEEEECCCCCCHHHHHHHHHH
Confidence            6666677899999999999999987765

>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11

Probab=97.58  E-value=4.6e-05  Score=52.04  Aligned_cols=23  Identities=30%  Similarity=0.495  Sum_probs=19.7

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhhC
Q 036449            7 IKCVTVGDGAVGKTCLLISYTSN   29 (197)
Q Consensus         7 ~~i~v~G~~~~GKstli~~~~~~   29 (197)
                      .+++++|++|+|||||++.+.+.
T Consensus         1 ~~i~l~G~nGsGKTTLl~~l~g~   23 (178)
T 1ye8_A            1 MKIIITGEPGVGKTTLVKKIVER   23 (178)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHHH
Confidence            47899999999999999877643

>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1

Probab=97.54  E-value=4.9e-05  Score=51.93  Aligned_cols=22  Identities=18%  Similarity=0.308  Sum_probs=19.7

Q ss_pred             EEEEEcCCCCCHHHHHHHHhhC
Q 036449            8 KCVTVGDGAVGKTCLLISYTSN   29 (197)
Q Consensus         8 ~i~v~G~~~~GKstli~~~~~~   29 (197)
                      -++++|++|||||||++.+...
T Consensus         7 ~i~i~GpsGsGKSTL~~~L~~~   28 (180)
T 1kgd_A            7 TLVLLGAHGVGRRHIKNTLITK   28 (180)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHhh
Confidence            5899999999999999998763

>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0

Probab=97.54  E-value=6.5e-05  Score=52.06  Aligned_cols=27  Identities=19%  Similarity=0.201  Sum_probs=21.9

Q ss_pred             CCceeEEEEEcCCCCCHHHHHHHHhhC
Q 036449            3 ASRFIKCVTVGDGAVGKTCLLISYTSN   29 (197)
Q Consensus         3 ~~~~~~i~v~G~~~~GKstli~~~~~~   29 (197)
                      ..+.--|+++|++|+|||||++.+...
T Consensus        16 ~~~g~~ivl~GPSGaGKsTL~~~L~~~   42 (197)
T 3ney_A           16 FQGRKTLVLIGASGVGRSHIKNALLSQ   42 (197)
T ss_dssp             CCSCCEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CCCCCEEEEECcCCCCHHHHHHHHHhh
Confidence            334446899999999999999998854

>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}

Probab=97.48  E-value=7.5e-05  Score=51.86  Aligned_cols=28  Identities=21%  Similarity=0.261  Sum_probs=20.7

Q ss_pred             CCCCceeEEEEEcCCCCCHHHHHHHHhh
Q 036449            1 MSASRFIKCVTVGDGAVGKTCLLISYTS   28 (197)
Q Consensus         1 m~~~~~~~i~v~G~~~~GKstli~~~~~   28 (197)
                      |+..+.-.|+++|++||||||+++.+..
T Consensus        24 m~~~~g~~i~l~G~~GsGKSTl~~~L~~   51 (200)
T 4eun_A           24 MTGEPTRHVVVMGVSGSGKTTIAHGVAD   51 (200)
T ss_dssp             ----CCCEEEEECCTTSCHHHHHHHHHH
T ss_pred             hcCCCCcEEEEECCCCCCHHHHHHHHHH
Confidence            3444456799999999999999988764

>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8

Probab=97.48  E-value=4.1e-05  Score=56.83  Aligned_cols=23  Identities=30%  Similarity=0.442  Sum_probs=20.0

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhhC
Q 036449            7 IKCVTVGDGAVGKTCLLISYTSN   29 (197)
Q Consensus         7 ~~i~v~G~~~~GKstli~~~~~~   29 (197)
                      -.++++|++|||||||++.+...
T Consensus       174 ~~~~lvG~sG~GKSTLln~L~g~  196 (307)
T 1t9h_A          174 KTTVFAGQSGVGKSSLLNAISPE  196 (307)
T ss_dssp             SEEEEEESHHHHHHHHHHHHCC-
T ss_pred             CEEEEECCCCCCHHHHHHHhccc
Confidence            36899999999999999999864

>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1

Probab=97.48  E-value=6.6e-05  Score=52.13  Aligned_cols=21  Identities=29%  Similarity=0.354  Sum_probs=19.1

Q ss_pred             EEEEEcCCCCCHHHHHHHHhh
Q 036449            8 KCVTVGDGAVGKTCLLISYTS   28 (197)
Q Consensus         8 ~i~v~G~~~~GKstli~~~~~   28 (197)
                      .++++|++|+|||||++.+.+
T Consensus         6 ~i~lvGpsGaGKSTLl~~L~~   26 (198)
T 1lvg_A            6 PVVLSGPSGAGKSTLLKKLFQ   26 (198)
T ss_dssp             CEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHh
Confidence            689999999999999988875

>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}

Probab=97.46  E-value=8.5e-05  Score=51.63  Aligned_cols=30  Identities=20%  Similarity=0.204  Sum_probs=23.0

Q ss_pred             CCCCceeEEEEEcCCCCCHHHHHHHHhhCC
Q 036449            1 MSASRFIKCVTVGDGAVGKTCLLISYTSNT   30 (197)
Q Consensus         1 m~~~~~~~i~v~G~~~~GKstli~~~~~~~   30 (197)
                      |+-.+...|+++|++||||||+++.+....
T Consensus         1 m~i~~g~~i~l~G~~GsGKSTl~~~L~~~~   30 (207)
T 2j41_A            1 MDNEKGLLIVLSGPSGVGKGTVRKRIFEDP   30 (207)
T ss_dssp             ---CCCCEEEEECSTTSCHHHHHHHHHHCT
T ss_pred             CCCCCCCEEEEECCCCCCHHHHHHHHHHhh
Confidence            444555679999999999999999887653

>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1

Probab=97.44  E-value=9.8e-05  Score=50.57  Aligned_cols=29  Identities=21%  Similarity=0.282  Sum_probs=23.8

Q ss_pred             CCCCceeEEEEEcCCCCCHHHHHHHHhhC
Q 036449            1 MSASRFIKCVTVGDGAVGKTCLLISYTSN   29 (197)
Q Consensus         1 m~~~~~~~i~v~G~~~~GKstli~~~~~~   29 (197)
                      |+..+..+|+++|.+||||||+.+.+...
T Consensus         5 ~~~~~~~~I~l~G~~GsGKSTv~~~La~~   33 (184)
T 1y63_A            5 MEQPKGINILITGTPGTGKTSMAEMIAAE   33 (184)
T ss_dssp             -CCCSSCEEEEECSTTSSHHHHHHHHHHH
T ss_pred             cCCCCCCEEEEECCCCCCHHHHHHHHHHh
Confidence            55666788999999999999999877654

>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}

Probab=97.44  E-value=0.00044  Score=51.27  Aligned_cols=20  Identities=35%  Similarity=0.670  Sum_probs=18.8

Q ss_pred             EEEEEcCCCCCHHHHHHHHh
Q 036449            8 KCVTVGDGAVGKTCLLISYT   27 (197)
Q Consensus         8 ~i~v~G~~~~GKstli~~~~   27 (197)
                      .++++|++|+|||||++.+.
T Consensus       167 i~~l~G~sG~GKSTLln~l~  186 (302)
T 2yv5_A          167 ICILAGPSGVGKSSILSRLT  186 (302)
T ss_dssp             EEEEECSTTSSHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHH
Confidence            57999999999999999998

>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}

Probab=97.42  E-value=0.00011  Score=51.33  Aligned_cols=23  Identities=22%  Similarity=0.235  Sum_probs=20.3

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhhC
Q 036449            7 IKCVTVGDGAVGKTCLLISYTSN   29 (197)
Q Consensus         7 ~~i~v~G~~~~GKstli~~~~~~   29 (197)
                      --|+++|++|||||||++.+...
T Consensus         9 ~~i~l~GpsGsGKsTl~~~L~~~   31 (208)
T 3tau_A            9 LLIVLSGPSGVGKGTVREAVFKD   31 (208)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHHS
T ss_pred             cEEEEECcCCCCHHHHHHHHHhh
Confidence            35889999999999999998865

>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A

Probab=97.40  E-value=9.8e-05  Score=50.74  Aligned_cols=21  Identities=29%  Similarity=0.384  Sum_probs=19.1

Q ss_pred             EEEEcCCCCCHHHHHHHHhhC
Q 036449            9 CVTVGDGAVGKTCLLISYTSN   29 (197)
Q Consensus         9 i~v~G~~~~GKstli~~~~~~   29 (197)
                      |+++|++|||||||++++...
T Consensus         4 IVi~GPSG~GK~Tl~~~L~~~   24 (186)
T 1ex7_A            4 IVISGPSGTGKSTLLKKLFAE   24 (186)
T ss_dssp             EEEECCTTSSHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHh
Confidence            789999999999999998754

>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*

Probab=97.38  E-value=0.00014  Score=49.80  Aligned_cols=28  Identities=18%  Similarity=0.139  Sum_probs=24.2

Q ss_pred             CCCCceeEEEEEcCCCCCHHHHHHHHhh
Q 036449            1 MSASRFIKCVTVGDGAVGKTCLLISYTS   28 (197)
Q Consensus         1 m~~~~~~~i~v~G~~~~GKstli~~~~~   28 (197)
                      |+.+....|++.|.+||||||+.+.+..
T Consensus         1 m~~~~~~~I~l~G~~GsGKsT~~~~L~~   28 (194)
T 1qf9_A            1 MEKSKPNVVFVLGGPGSGKGTQCANIVR   28 (194)
T ss_dssp             CCCCCCEEEEEEESTTSSHHHHHHHHHH
T ss_pred             CCCCcCcEEEEECCCCCCHHHHHHHHHH
Confidence            7777667899999999999999987764

>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*

Probab=97.35  E-value=0.00012  Score=51.78  Aligned_cols=22  Identities=14%  Similarity=0.259  Sum_probs=19.6

Q ss_pred             EEEEEcCCCCCHHHHHHHHhhC
Q 036449            8 KCVTVGDGAVGKTCLLISYTSN   29 (197)
Q Consensus         8 ~i~v~G~~~~GKstli~~~~~~   29 (197)
                      -++++|++|||||||++.+.+.
T Consensus        18 ii~l~GpsGsGKSTLlk~L~g~   39 (219)
T 1s96_A           18 LYIVSAPSGAGKSSLIQALLKT   39 (219)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHhcc
Confidence            5889999999999999988764

>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}

Probab=97.33  E-value=0.00013  Score=50.69  Aligned_cols=22  Identities=18%  Similarity=0.246  Sum_probs=19.6

Q ss_pred             EEEEEcCCCCCHHHHHHHHhhC
Q 036449            8 KCVTVGDGAVGKTCLLISYTSN   29 (197)
Q Consensus         8 ~i~v~G~~~~GKstli~~~~~~   29 (197)
                      -|+++|++|||||||++.+.+.
T Consensus         9 ii~l~Gp~GsGKSTl~~~L~~~   30 (205)
T 3tr0_A            9 LFIISAPSGAGKTSLVRALVKA   30 (205)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHH
T ss_pred             EEEEECcCCCCHHHHHHHHHhh
Confidence            5899999999999999988764

>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*

Probab=97.32  E-value=0.00011  Score=49.77  Aligned_cols=20  Identities=20%  Similarity=0.257  Sum_probs=17.5

Q ss_pred             EEEEEcCCCCCHHHHHHHHh
Q 036449            8 KCVTVGDGAVGKTCLLISYT   27 (197)
Q Consensus         8 ~i~v~G~~~~GKstli~~~~   27 (197)
                      -++++|++|||||||++.+.
T Consensus        11 i~~l~G~nGsGKSTl~~~~~   30 (171)
T 4gp7_A           11 LVVLIGSSGSGKSTFAKKHF   30 (171)
T ss_dssp             EEEEECCTTSCHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHc
Confidence            47899999999999999644

>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*

Probab=97.31  E-value=0.00021  Score=48.34  Aligned_cols=24  Identities=17%  Similarity=0.171  Sum_probs=20.5

Q ss_pred             ceeEEEEEcCCCCCHHHHHHHHhh
Q 036449            5 RFIKCVTVGDGAVGKTCLLISYTS   28 (197)
Q Consensus         5 ~~~~i~v~G~~~~GKstli~~~~~   28 (197)
                      +.-.|+++|++||||||+.+.+..
T Consensus         7 ~g~~i~l~G~~GsGKSTl~~~l~~   30 (175)
T 1knq_A            7 DHHIYVLMGVSGSGKSAVASEVAH   30 (175)
T ss_dssp             TSEEEEEECSTTSCHHHHHHHHHH
T ss_pred             CCcEEEEEcCCCCCHHHHHHHHHH
Confidence            346799999999999999988764

>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}

Probab=97.30  E-value=0.00014  Score=51.25  Aligned_cols=22  Identities=27%  Similarity=0.371  Sum_probs=19.5

Q ss_pred             EEEEEcCCCCCHHHHHHHHhhC
Q 036449            8 KCVTVGDGAVGKTCLLISYTSN   29 (197)
Q Consensus         8 ~i~v~G~~~~GKstli~~~~~~   29 (197)
                      .++++|++|+|||||++.+.+.
T Consensus        25 ~~~lvGpsGsGKSTLl~~L~g~   46 (218)
T 1z6g_A           25 PLVICGPSGVGKGTLIKKLLNE   46 (218)
T ss_dssp             CEEEECSTTSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHhh
Confidence            4899999999999999988764

>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A

Probab=97.29  E-value=0.00015  Score=50.69  Aligned_cols=22  Identities=27%  Similarity=0.363  Sum_probs=19.3

Q ss_pred             EEEEEcCCCCCHHHHHHHHhhC
Q 036449            8 KCVTVGDGAVGKTCLLISYTSN   29 (197)
Q Consensus         8 ~i~v~G~~~~GKstli~~~~~~   29 (197)
                      -++++|++|||||||++.+.+-
T Consensus        22 i~~l~GpnGsGKSTLl~~l~gl   43 (207)
T 1znw_A           22 VVVLSGPSAVGKSTVVRCLRER   43 (207)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHhh
Confidence            4789999999999999988764

>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25

Probab=97.28  E-value=0.00019  Score=49.28  Aligned_cols=24  Identities=13%  Similarity=0.032  Sum_probs=21.0

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHhhC
Q 036449            6 FIKCVTVGDGAVGKTCLLISYTSN   29 (197)
Q Consensus         6 ~~~i~v~G~~~~GKstli~~~~~~   29 (197)
                      .-.|+++|++|||||||++.+...
T Consensus         9 g~~i~l~G~~GsGKSTl~~~La~~   32 (191)
T 1zp6_A            9 GNILLLSGHPGSGKSTIAEALANL   32 (191)
T ss_dssp             TEEEEEEECTTSCHHHHHHHHHTC
T ss_pred             CeEEEEECCCCCCHHHHHHHHHhc
Confidence            356899999999999999998775

>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*

Probab=97.25  E-value=0.00018  Score=50.31  Aligned_cols=28  Identities=25%  Similarity=0.140  Sum_probs=21.6

Q ss_pred             CCCCceeEEEEEcCCCCCHHHHHHHHhh
Q 036449            1 MSASRFIKCVTVGDGAVGKTCLLISYTS   28 (197)
Q Consensus         1 m~~~~~~~i~v~G~~~~GKstli~~~~~   28 (197)
                      |+-.+...|++.|.+||||||+.+.+..
T Consensus         4 m~~~~~~~I~l~G~~GsGKsT~~~~L~~   31 (215)
T 1nn5_A            4 MAARRGALIVLEGVDRAGKSTQSRKLVE   31 (215)
T ss_dssp             ---CCCCEEEEEESTTSSHHHHHHHHHH
T ss_pred             ccccCCcEEEEECCCCCCHHHHHHHHHH
Confidence            4444567899999999999999988764

>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}

Probab=97.25  E-value=0.00021  Score=49.94  Aligned_cols=24  Identities=17%  Similarity=0.083  Sum_probs=20.5

Q ss_pred             ceeEEEEEcCCCCCHHHHHHHHhh
Q 036449            5 RFIKCVTVGDGAVGKTCLLISYTS   28 (197)
Q Consensus         5 ~~~~i~v~G~~~~GKstli~~~~~   28 (197)
                      +...|+++|++|||||||++.+..
T Consensus        21 ~g~~v~I~G~sGsGKSTl~~~l~~   44 (208)
T 3c8u_A           21 GRQLVALSGAPGSGKSTLSNPLAA   44 (208)
T ss_dssp             SCEEEEEECCTTSCTHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHH
Confidence            446799999999999999987764

>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}

Probab=97.22  E-value=0.00019  Score=49.92  Aligned_cols=23  Identities=30%  Similarity=0.329  Sum_probs=20.0

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhhC
Q 036449            7 IKCVTVGDGAVGKTCLLISYTSN   29 (197)
Q Consensus         7 ~~i~v~G~~~~GKstli~~~~~~   29 (197)
                      .-|+++|++||||||+++.+...
T Consensus        13 ~~i~l~G~sGsGKsTl~~~L~~~   35 (204)
T 2qor_A           13 PPLVVCGPSGVGKGTLIKKVLSE   35 (204)
T ss_dssp             CCEEEECCTTSCHHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHHh
Confidence            45899999999999999988753

>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*

Probab=97.16  E-value=0.00023  Score=50.83  Aligned_cols=22  Identities=18%  Similarity=0.166  Sum_probs=19.5

Q ss_pred             EEEEEcCCCCCHHHHHHHHhhC
Q 036449            8 KCVTVGDGAVGKTCLLISYTSN   29 (197)
Q Consensus         8 ~i~v~G~~~~GKstli~~~~~~   29 (197)
                      .++++|+.|||||||++.+.+-
T Consensus        33 ~~~iiG~nGsGKSTLl~~l~Gl   54 (235)
T 3tif_A           33 FVSIMGPSGSGKSTMLNIIGCL   54 (235)
T ss_dssp             EEEEECSTTSSHHHHHHHHTTS
T ss_pred             EEEEECCCCCcHHHHHHHHhcC
Confidence            3799999999999999988764

>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A

Probab=97.15  E-value=0.00027  Score=47.23  Aligned_cols=23  Identities=26%  Similarity=0.183  Sum_probs=20.1

Q ss_pred             EEEEEcCCCCCHHHHHHHHhhCC
Q 036449            8 KCVTVGDGAVGKTCLLISYTSNT   30 (197)
Q Consensus         8 ~i~v~G~~~~GKstli~~~~~~~   30 (197)
                      .++++|+.|+|||||++.+.+.-
T Consensus        35 ~v~L~G~nGaGKTTLlr~l~g~l   57 (158)
T 1htw_A           35 MVYLNGDLGAGKTTLTRGMLQGI   57 (158)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHT
T ss_pred             EEEEECCCCCCHHHHHHHHHHhC
Confidence            58999999999999998887653

>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A

Probab=97.14  E-value=0.00028  Score=47.43  Aligned_cols=20  Identities=15%  Similarity=0.047  Sum_probs=18.6

Q ss_pred             eEEEEEcCCCCCHHHHHHHH
Q 036449            7 IKCVTVGDGAVGKTCLLISY   26 (197)
Q Consensus         7 ~~i~v~G~~~~GKstli~~~   26 (197)
                      +.|+++|++||||||+.+.+
T Consensus         2 ~~I~l~G~~GsGKsT~a~~L   21 (179)
T 3lw7_A            2 KVILITGMPGSGKSEFAKLL   21 (179)
T ss_dssp             CEEEEECCTTSCHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHH
Confidence            46899999999999999998

>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2

Probab=97.14  E-value=0.00028  Score=47.58  Aligned_cols=23  Identities=17%  Similarity=0.161  Sum_probs=20.0

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhhC
Q 036449            7 IKCVTVGDGAVGKTCLLISYTSN   29 (197)
Q Consensus         7 ~~i~v~G~~~~GKstli~~~~~~   29 (197)
                      ..|+++|++||||||+.+.+...
T Consensus         5 ~~i~l~G~~GsGKSTl~~~La~~   27 (173)
T 1kag_A            5 RNIFLVGPMGAGKSTIGRQLAQQ   27 (173)
T ss_dssp             CCEEEECCTTSCHHHHHHHHHHH
T ss_pred             CeEEEECCCCCCHHHHHHHHHHH
Confidence            36999999999999999888653

>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*

Probab=97.13  E-value=0.0004  Score=48.11  Aligned_cols=26  Identities=12%  Similarity=0.105  Sum_probs=21.6

Q ss_pred             CCceeEEEEEcCCCCCHHHHHHHHhh
Q 036449            3 ASRFIKCVTVGDGAVGKTCLLISYTS   28 (197)
Q Consensus         3 ~~~~~~i~v~G~~~~GKstli~~~~~   28 (197)
                      +.+...|++.|.+||||||+.+.+..
T Consensus        12 ~~~~~~I~l~G~~GsGKsT~~~~L~~   37 (203)
T 1ukz_A           12 PDQVSVIFVLGGPGAGKGTQCEKLVK   37 (203)
T ss_dssp             TTTCEEEEEECSTTSSHHHHHHHHHH
T ss_pred             CCCCcEEEEECCCCCCHHHHHHHHHH
Confidence            34556899999999999999988764

>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*

Probab=97.12  E-value=0.00031  Score=47.19  Aligned_cols=21  Identities=10%  Similarity=0.061  Sum_probs=19.0

Q ss_pred             EEEEEcCCCCCHHHHHHHHhh
Q 036449            8 KCVTVGDGAVGKTCLLISYTS   28 (197)
Q Consensus         8 ~i~v~G~~~~GKstli~~~~~   28 (197)
                      .|++.|++||||||+.+.+..
T Consensus         3 ~i~l~G~~GsGKsT~~~~L~~   23 (173)
T 3kb2_A            3 LIILEGPDCCFKSTVAAKLSK   23 (173)
T ss_dssp             EEEEECSSSSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            689999999999999988864

>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}

Probab=97.12  E-value=0.00029  Score=49.33  Aligned_cols=22  Identities=18%  Similarity=0.143  Sum_probs=19.4

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhh
Q 036449            7 IKCVTVGDGAVGKTCLLISYTS   28 (197)
Q Consensus         7 ~~i~v~G~~~~GKstli~~~~~   28 (197)
                      ++|++.|++||||||+.+.|..
T Consensus         1 m~I~l~G~~GsGKsT~a~~L~~   22 (216)
T 3fb4_A            1 MNIVLMGLPGAGKGTQAEQIIE   22 (216)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHH
Confidence            4799999999999999988753

>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25

Probab=97.12  E-value=0.00029  Score=48.29  Aligned_cols=21  Identities=19%  Similarity=0.281  Sum_probs=19.0

Q ss_pred             EEEEEcCCCCCHHHHHHHHhh
Q 036449            8 KCVTVGDGAVGKTCLLISYTS   28 (197)
Q Consensus         8 ~i~v~G~~~~GKstli~~~~~   28 (197)
                      -++++|++|+||||+++.+..
T Consensus         4 ii~l~G~~GaGKSTl~~~L~~   24 (189)
T 2bdt_A            4 LYIITGPAGVGKSTTCKRLAA   24 (189)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCcHHHHHHHHhc
Confidence            478999999999999999875

>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*

Probab=97.11  E-value=0.00028  Score=49.94  Aligned_cols=25  Identities=24%  Similarity=0.422  Sum_probs=20.3

Q ss_pred             CceeEEEEEcCCCCCHHHHHHHHhh
Q 036449            4 SRFIKCVTVGDGAVGKTCLLISYTS   28 (197)
Q Consensus         4 ~~~~~i~v~G~~~~GKstli~~~~~   28 (197)
                      ++...|++.|.+||||||+.+.+..
T Consensus         5 ~~~~~I~l~G~~GsGKsT~a~~La~   29 (227)
T 1zd8_A            5 ARLLRAVIMGAPGSGKGTVSSRITT   29 (227)
T ss_dssp             --CCEEEEEECTTSSHHHHHHHHHH
T ss_pred             ccCcEEEEECCCCCCHHHHHHHHHH
Confidence            3457899999999999999987763

>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1

Probab=97.10  E-value=0.00032  Score=47.50  Aligned_cols=22  Identities=18%  Similarity=0.240  Sum_probs=20.0

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhh
Q 036449            7 IKCVTVGDGAVGKTCLLISYTS   28 (197)
Q Consensus         7 ~~i~v~G~~~~GKstli~~~~~   28 (197)
                      ..|++.|.+||||||+.+.+..
T Consensus         3 ~~I~i~G~~GsGKST~a~~L~~   24 (181)
T 1ly1_A            3 KIILTIGCPGSGKSTWAREFIA   24 (181)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHH
T ss_pred             eEEEEecCCCCCHHHHHHHHHh
Confidence            4689999999999999999886

>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*

Probab=97.09  E-value=0.00032  Score=49.17  Aligned_cols=22  Identities=18%  Similarity=0.092  Sum_probs=19.5

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhh
Q 036449            7 IKCVTVGDGAVGKTCLLISYTS   28 (197)
Q Consensus         7 ~~i~v~G~~~~GKstli~~~~~   28 (197)
                      ++|++.|++||||||+.+.|..
T Consensus         1 m~I~l~G~~GsGKsT~a~~L~~   22 (216)
T 3dl0_A            1 MNLVLMGLPGAGKGTQGERIVE   22 (216)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHH
Confidence            4799999999999999988854

>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A

Probab=97.09  E-value=0.00044  Score=47.88  Aligned_cols=25  Identities=12%  Similarity=0.294  Sum_probs=21.6

Q ss_pred             CceeEEEEEcCCCCCHHHHHHHHhh
Q 036449            4 SRFIKCVTVGDGAVGKTCLLISYTS   28 (197)
Q Consensus         4 ~~~~~i~v~G~~~~GKstli~~~~~   28 (197)
                      ...+.|++.|.+||||||+.+.+..
T Consensus        18 ~~~~~I~l~G~~GsGKST~a~~La~   42 (201)
T 2cdn_A           18 GSHMRVLLLGPPGAGKGTQAVKLAE   42 (201)
T ss_dssp             CSCCEEEEECCTTSSHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHH
Confidence            4557899999999999999988764

>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A

Probab=97.08  E-value=0.00037  Score=49.96  Aligned_cols=22  Identities=18%  Similarity=0.345  Sum_probs=19.9

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHh
Q 036449            6 FIKCVTVGDGAVGKTCLLISYT   27 (197)
Q Consensus         6 ~~~i~v~G~~~~GKstli~~~~   27 (197)
                      ...|+++|++||||||+++.+.
T Consensus        27 ~~~i~l~G~~GsGKSTl~k~La   48 (246)
T 2bbw_A           27 LLRAVILGPPGSGKGTVCQRIA   48 (246)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHH
T ss_pred             CcEEEEECCCCCCHHHHHHHHH
Confidence            3579999999999999998887

>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}

Probab=97.07  E-value=0.0004  Score=48.10  Aligned_cols=22  Identities=23%  Similarity=0.309  Sum_probs=19.4

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhh
Q 036449            7 IKCVTVGDGAVGKTCLLISYTS   28 (197)
Q Consensus         7 ~~i~v~G~~~~GKstli~~~~~   28 (197)
                      -.|+++|++||||||+.+.+..
T Consensus        26 ~~i~l~G~~GsGKsTl~~~La~   47 (199)
T 3vaa_A           26 VRIFLTGYMGAGKTTLGKAFAR   47 (199)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHH
T ss_pred             CEEEEEcCCCCCHHHHHHHHHH
Confidence            4799999999999999987764

>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A

Probab=97.07  E-value=0.0003  Score=49.86  Aligned_cols=22  Identities=23%  Similarity=0.221  Sum_probs=19.3

Q ss_pred             EEEEEcCCCCCHHHHHHHHhhC
Q 036449            8 KCVTVGDGAVGKTCLLISYTSN   29 (197)
Q Consensus         8 ~i~v~G~~~~GKstli~~~~~~   29 (197)
                      .++++|+.|+|||||++.+.+-
T Consensus        32 ~~~iiG~nGsGKSTLl~~l~Gl   53 (224)
T 2pcj_A           32 FVSIIGASGSGKSTLLYILGLL   53 (224)
T ss_dssp             EEEEEECTTSCHHHHHHHHTTS
T ss_pred             EEEEECCCCCCHHHHHHHHhcC
Confidence            3789999999999999988764

>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*

Probab=97.06  E-value=0.0003  Score=48.79  Aligned_cols=24  Identities=17%  Similarity=0.111  Sum_probs=20.1

Q ss_pred             ceeEEEEEcCCCCCHHHHHHHHhh
Q 036449            5 RFIKCVTVGDGAVGKTCLLISYTS   28 (197)
Q Consensus         5 ~~~~i~v~G~~~~GKstli~~~~~   28 (197)
                      +.-.|+++|++|+||||+.+.+..
T Consensus        24 ~g~~i~l~G~sGsGKSTl~~~La~   47 (200)
T 3uie_A           24 KGCVIWVTGLSGSGKSTLACALNQ   47 (200)
T ss_dssp             CCEEEEEECSTTSSHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHH
Confidence            345799999999999999987754

>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11

Probab=97.06  E-value=0.00034  Score=48.19  Aligned_cols=21  Identities=29%  Similarity=0.376  Sum_probs=18.4

Q ss_pred             EEEEEcCCCCCHHHHHHHHhh
Q 036449            8 KCVTVGDGAVGKTCLLISYTS   28 (197)
Q Consensus         8 ~i~v~G~~~~GKstli~~~~~   28 (197)
                      .++++|+.|+|||||++.+.+
T Consensus         3 ~i~i~G~nG~GKTTll~~l~g   23 (189)
T 2i3b_A            3 HVFLTGPPGVGKTTLIHKASE   23 (189)
T ss_dssp             CEEEESCCSSCHHHHHHHHHH
T ss_pred             EEEEECCCCChHHHHHHHHHh
Confidence            589999999999999977664

>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A

Probab=97.05  E-value=0.00038  Score=47.25  Aligned_cols=23  Identities=22%  Similarity=0.079  Sum_probs=20.2

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhhC
Q 036449            7 IKCVTVGDGAVGKTCLLISYTSN   29 (197)
Q Consensus         7 ~~i~v~G~~~~GKstli~~~~~~   29 (197)
                      .-++++|++|+|||||++++...
T Consensus         7 ~~i~i~G~sGsGKTTl~~~l~~~   29 (174)
T 1np6_A            7 PLLAFAAWSGTGKTTLLKKLIPA   29 (174)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHHH
T ss_pred             eEEEEEeCCCCCHHHHHHHHHHh
Confidence            46899999999999999988764

>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*

Probab=97.05  E-value=0.00041  Score=47.97  Aligned_cols=21  Identities=19%  Similarity=0.278  Sum_probs=19.0

Q ss_pred             EEEEEcCCCCCHHHHHHHHhh
Q 036449            8 KCVTVGDGAVGKTCLLISYTS   28 (197)
Q Consensus         8 ~i~v~G~~~~GKstli~~~~~   28 (197)
                      .|++.|.+||||||+.+.+..
T Consensus         2 ~I~i~G~~GsGKsT~~~~L~~   22 (205)
T 2jaq_A            2 KIAIFGTVGAGKSTISAEISK   22 (205)
T ss_dssp             EEEEECCTTSCHHHHHHHHHH
T ss_pred             EEEEECCCccCHHHHHHHHHH
Confidence            689999999999999988765

>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}

Probab=97.05  E-value=0.00036  Score=50.62  Aligned_cols=21  Identities=19%  Similarity=0.260  Sum_probs=18.9

Q ss_pred             EEEEEcCCCCCHHHHHHHHhh
Q 036449            8 KCVTVGDGAVGKTCLLISYTS   28 (197)
Q Consensus         8 ~i~v~G~~~~GKstli~~~~~   28 (197)
                      .++++|++|||||||++.+.+
T Consensus        27 ~v~i~Gp~GsGKSTll~~l~g   47 (261)
T 2eyu_A           27 LILVTGPTGSGKSTTIASMID   47 (261)
T ss_dssp             EEEEECSTTCSHHHHHHHHHH
T ss_pred             EEEEECCCCccHHHHHHHHHH
Confidence            589999999999999988765

>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12

Probab=97.05  E-value=0.00037  Score=49.91  Aligned_cols=22  Identities=27%  Similarity=0.436  Sum_probs=19.7

Q ss_pred             EEEEEcCCCCCHHHHHHHHhhC
Q 036449            8 KCVTVGDGAVGKTCLLISYTSN   29 (197)
Q Consensus         8 ~i~v~G~~~~GKstli~~~~~~   29 (197)
                      .++++|+.|+|||||++.+.+-
T Consensus        26 ~~~liG~nGsGKSTLl~~l~Gl   47 (240)
T 2onk_A           26 YCVLLGPTGAGKSVFLELIAGI   47 (240)
T ss_dssp             EEEEECCTTSSHHHHHHHHHTS
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            4789999999999999988765

>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V

Probab=97.04  E-value=0.00037  Score=52.75  Aligned_cols=23  Identities=26%  Similarity=0.358  Sum_probs=20.7

Q ss_pred             EEEEEcCCCCCHHHHHHHHhhCC
Q 036449            8 KCVTVGDGAVGKTCLLISYTSNT   30 (197)
Q Consensus         8 ~i~v~G~~~~GKstli~~~~~~~   30 (197)
                      .++++|++|+|||||++.+.+..
T Consensus       217 ~~~lvG~sG~GKSTLln~L~g~~  239 (358)
T 2rcn_A          217 ISIFAGQSGVGKSSLLNALLGLQ  239 (358)
T ss_dssp             EEEEECCTTSSHHHHHHHHHCCS
T ss_pred             EEEEECCCCccHHHHHHHHhccc
Confidence            58999999999999999998754

>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*

Probab=97.03  E-value=0.00054  Score=47.38  Aligned_cols=25  Identities=24%  Similarity=0.109  Sum_probs=21.7

Q ss_pred             ceeEEEEEcCCCCCHHHHHHHHhhC
Q 036449            5 RFIKCVTVGDGAVGKTCLLISYTSN   29 (197)
Q Consensus         5 ~~~~i~v~G~~~~GKstli~~~~~~   29 (197)
                      +...|++.|.+||||||+.+.+...
T Consensus         3 ~~~~I~l~G~~GsGKsT~~~~L~~~   27 (204)
T 2v54_A            3 RGALIVFEGLDKSGKTTQCMNIMES   27 (204)
T ss_dssp             CCCEEEEECCTTSSHHHHHHHHHHT
T ss_pred             CCcEEEEEcCCCCCHHHHHHHHHHH
Confidence            3467999999999999999988764

>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*

Probab=97.03  E-value=0.00044  Score=48.33  Aligned_cols=22  Identities=18%  Similarity=0.163  Sum_probs=19.3

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhh
Q 036449            7 IKCVTVGDGAVGKTCLLISYTS   28 (197)
Q Consensus         7 ~~i~v~G~~~~GKstli~~~~~   28 (197)
                      ++|+++|+|||||+|....+..
T Consensus         1 M~Iil~GpPGsGKgTqa~~La~   22 (206)
T 3sr0_A            1 MILVFLGPPGAGKGTQAKRLAK   22 (206)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHH
Confidence            4799999999999999987764

>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}

Probab=97.03  E-value=0.00049  Score=46.91  Aligned_cols=24  Identities=13%  Similarity=0.034  Sum_probs=20.5

Q ss_pred             ceeEEEEEcCCCCCHHHHHHHHhh
Q 036449            5 RFIKCVTVGDGAVGKTCLLISYTS   28 (197)
Q Consensus         5 ~~~~i~v~G~~~~GKstli~~~~~   28 (197)
                      +...|+++|.+||||||+.+.+..
T Consensus         3 ~g~~I~l~G~~GsGKST~~~~La~   26 (186)
T 3cm0_A            3 VGQAVIFLGPPGAGKGTQASRLAQ   26 (186)
T ss_dssp             CEEEEEEECCTTSCHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHH
Confidence            346799999999999999988764

>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}

Probab=97.02  E-value=0.00041  Score=49.54  Aligned_cols=22  Identities=27%  Similarity=0.388  Sum_probs=19.6

Q ss_pred             EEEEEcCCCCCHHHHHHHHhhC
Q 036449            8 KCVTVGDGAVGKTCLLISYTSN   29 (197)
Q Consensus         8 ~i~v~G~~~~GKstli~~~~~~   29 (197)
                      .++++|+.|+|||||++.+.+-
T Consensus        33 ~~~i~G~nGsGKSTLl~~l~Gl   54 (237)
T 2cbz_A           33 LVAVVGQVGCGKSSLLSALLAE   54 (237)
T ss_dssp             EEEEECSTTSSHHHHHHHHTTC
T ss_pred             EEEEECCCCCCHHHHHHHHhcC
Confidence            4789999999999999988764

>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}

Probab=97.02  E-value=0.00038  Score=50.87  Aligned_cols=22  Identities=23%  Similarity=0.442  Sum_probs=19.5

Q ss_pred             EEEEEcCCCCCHHHHHHHHhhC
Q 036449            8 KCVTVGDGAVGKTCLLISYTSN   29 (197)
Q Consensus         8 ~i~v~G~~~~GKstli~~~~~~   29 (197)
                      .++++|+.|+|||||++.+.+-
T Consensus        36 ~~~iiGpnGsGKSTLl~~l~Gl   57 (275)
T 3gfo_A           36 VTAILGGNGVGKSTLFQNFNGI   57 (275)
T ss_dssp             EEEEECCTTSSHHHHHHHHTTS
T ss_pred             EEEEECCCCCCHHHHHHHHHcC
Confidence            3789999999999999988764

>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12

Probab=97.02  E-value=0.00038  Score=50.50  Aligned_cols=22  Identities=18%  Similarity=0.217  Sum_probs=19.5

Q ss_pred             EEEEEcCCCCCHHHHHHHHhhC
Q 036449            8 KCVTVGDGAVGKTCLLISYTSN   29 (197)
Q Consensus         8 ~i~v~G~~~~GKstli~~~~~~   29 (197)
                      .++++|+.|+|||||++.+.+-
T Consensus        34 ~~~liG~nGsGKSTLlk~l~Gl   55 (262)
T 1b0u_A           34 VISIIGSSGSGKSTFLRCINFL   55 (262)
T ss_dssp             EEEEECCTTSSHHHHHHHHTTS
T ss_pred             EEEEECCCCCCHHHHHHHHhcC
Confidence            3789999999999999988764

>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12

Probab=97.01  E-value=0.0004  Score=48.81  Aligned_cols=22  Identities=27%  Similarity=0.333  Sum_probs=19.4

Q ss_pred             EEEEEcCCCCCHHHHHHHHhhC
Q 036449            8 KCVTVGDGAVGKTCLLISYTSN   29 (197)
Q Consensus         8 ~i~v~G~~~~GKstli~~~~~~   29 (197)
                      .++++|+.|+|||||++.+.+-
T Consensus        37 ~~~iiG~NGsGKSTLlk~l~Gl   58 (214)
T 1sgw_A           37 VVNFHGPNGIGKTTLLKTISTY   58 (214)
T ss_dssp             CEEEECCTTSSHHHHHHHHTTS
T ss_pred             EEEEECCCCCCHHHHHHHHhcC
Confidence            3789999999999999988764

>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*

Probab=97.01  E-value=0.0004  Score=46.99  Aligned_cols=23  Identities=17%  Similarity=0.213  Sum_probs=20.1

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhhC
Q 036449            7 IKCVTVGDGAVGKTCLLISYTSN   29 (197)
Q Consensus         7 ~~i~v~G~~~~GKstli~~~~~~   29 (197)
                      ..|++.|.+||||||+.+.+...
T Consensus         4 ~~i~l~G~~GsGKST~a~~La~~   26 (178)
T 1qhx_A            4 RMIILNGGSSAGKSGIVRCLQSV   26 (178)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHh
Confidence            36899999999999999888763

>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}

Probab=97.01  E-value=0.00054  Score=49.10  Aligned_cols=25  Identities=12%  Similarity=0.105  Sum_probs=21.7

Q ss_pred             CceeEEEEEcCCCCCHHHHHHHHhh
Q 036449            4 SRFIKCVTVGDGAVGKTCLLISYTS   28 (197)
Q Consensus         4 ~~~~~i~v~G~~~~GKstli~~~~~   28 (197)
                      .+.++|++.|++||||||+.+.|..
T Consensus        27 ~~~~~I~l~G~~GsGKsT~a~~L~~   51 (243)
T 3tlx_A           27 KPDGRYIFLGAPGSGKGTQSLNLKK   51 (243)
T ss_dssp             SCCEEEEEECCTTSSHHHHHHHHHH
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHHH
Confidence            3568999999999999999988864

>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}

Probab=97.01  E-value=0.00041  Score=48.07  Aligned_cols=22  Identities=18%  Similarity=0.160  Sum_probs=19.6

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhh
Q 036449            7 IKCVTVGDGAVGKTCLLISYTS   28 (197)
Q Consensus         7 ~~i~v~G~~~~GKstli~~~~~   28 (197)
                      ..|+++|.+||||||+.+.+..
T Consensus        19 ~~I~l~G~~GsGKSTla~~L~~   40 (202)
T 3t61_A           19 GSIVVMGVSGSGKSSVGEAIAE   40 (202)
T ss_dssp             SCEEEECSTTSCHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHH
Confidence            4699999999999999988764

>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*

Probab=97.00  E-value=0.00048  Score=49.60  Aligned_cols=28  Identities=14%  Similarity=0.086  Sum_probs=21.4

Q ss_pred             CCCCceeEEEEEcCCCCCHHHHHHHHhh
Q 036449            1 MSASRFIKCVTVGDGAVGKTCLLISYTS   28 (197)
Q Consensus         1 m~~~~~~~i~v~G~~~~GKstli~~~~~   28 (197)
                      |+..+.+.|++.|.+||||||+.+.|..
T Consensus        17 ~~~~~~~iI~I~G~~GSGKST~a~~L~~   44 (252)
T 1uj2_A           17 PNGGEPFLIGVSGGTASGKSSVCAKIVQ   44 (252)
T ss_dssp             ----CCEEEEEECSTTSSHHHHHHHHHH
T ss_pred             ccCCCcEEEEEECCCCCCHHHHHHHHHH
Confidence            3445668899999999999999987765

>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A

Probab=97.00  E-value=0.00051  Score=46.64  Aligned_cols=23  Identities=30%  Similarity=0.303  Sum_probs=19.9

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHhh
Q 036449            6 FIKCVTVGDGAVGKTCLLISYTS   28 (197)
Q Consensus         6 ~~~i~v~G~~~~GKstli~~~~~   28 (197)
                      ...|++.|.+|+||||+.+.+..
T Consensus        11 ~~~i~i~G~~GsGKst~~~~l~~   33 (180)
T 3iij_A           11 LPNILLTGTPGVGKTTLGKELAS   33 (180)
T ss_dssp             CCCEEEECSTTSSHHHHHHHHHH
T ss_pred             CCeEEEEeCCCCCHHHHHHHHHH
Confidence            35699999999999999988764

>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*

Probab=96.99  E-value=0.00053  Score=48.31  Aligned_cols=22  Identities=18%  Similarity=0.128  Sum_probs=19.4

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhh
Q 036449            7 IKCVTVGDGAVGKTCLLISYTS   28 (197)
Q Consensus         7 ~~i~v~G~~~~GKstli~~~~~   28 (197)
                      ..|.++|++||||||+.+.+..
T Consensus         6 ~~i~i~G~~GsGKSTl~~~L~~   27 (227)
T 1cke_A            6 PVITIDGPSGAGKGTLCKAMAE   27 (227)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHH
Confidence            5799999999999999977754

>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*

Probab=96.99  E-value=0.00045  Score=51.18  Aligned_cols=21  Identities=24%  Similarity=0.195  Sum_probs=18.8

Q ss_pred             EEEEEcCCCCCHHHHHHHHhh
Q 036449            8 KCVTVGDGAVGKTCLLISYTS   28 (197)
Q Consensus         8 ~i~v~G~~~~GKstli~~~~~   28 (197)
                      .++++|++|+|||||++.+.+
T Consensus       128 ~vaIvGpsGsGKSTLl~lL~g  148 (305)
T 2v9p_A          128 CLAFIGPPNTGKSMLCNSLIH  148 (305)
T ss_dssp             EEEEECSSSSSHHHHHHHHHH
T ss_pred             EEEEECCCCCcHHHHHHHHhh
Confidence            689999999999999987764

>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}

Probab=96.99  E-value=0.00059  Score=47.44  Aligned_cols=23  Identities=13%  Similarity=-0.003  Sum_probs=20.3

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHhh
Q 036449            6 FIKCVTVGDGAVGKTCLLISYTS   28 (197)
Q Consensus         6 ~~~i~v~G~~~~GKstli~~~~~   28 (197)
                      ...|++.|.+||||||+.+.+..
T Consensus         4 ~~~I~i~G~~GsGKsT~~~~L~~   26 (213)
T 2plr_A            4 GVLIAFEGIDGSGKSSQATLLKD   26 (213)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHH
T ss_pred             CeEEEEEcCCCCCHHHHHHHHHH
Confidence            46799999999999999988865

>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}

Probab=96.99  E-value=0.0004  Score=50.48  Aligned_cols=22  Identities=27%  Similarity=0.363  Sum_probs=19.6

Q ss_pred             EEEEEcCCCCCHHHHHHHHhhC
Q 036449            8 KCVTVGDGAVGKTCLLISYTSN   29 (197)
Q Consensus         8 ~i~v~G~~~~GKstli~~~~~~   29 (197)
                      .++++|+.|+|||||++.+.+-
T Consensus        39 ~~~liG~nGsGKSTLl~~l~Gl   60 (266)
T 4g1u_C           39 MVAIIGPNGAGKSTLLRLLTGY   60 (266)
T ss_dssp             EEEEECCTTSCHHHHHHHHTSS
T ss_pred             EEEEECCCCCcHHHHHHHHhcC
Confidence            3789999999999999988864

>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}

Probab=96.98  E-value=0.00054  Score=46.92  Aligned_cols=23  Identities=26%  Similarity=0.264  Sum_probs=20.2

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHhh
Q 036449            6 FIKCVTVGDGAVGKTCLLISYTS   28 (197)
Q Consensus         6 ~~~i~v~G~~~~GKstli~~~~~   28 (197)
                      ...|+++|.+||||||+.+.+..
T Consensus         5 ~~~I~l~G~~GsGKST~~~~L~~   27 (193)
T 2rhm_A            5 PALIIVTGHPATGKTTLSQALAT   27 (193)
T ss_dssp             CEEEEEEESTTSSHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHH
Confidence            45799999999999999988764

>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12

Probab=96.98  E-value=0.00047  Score=49.42  Aligned_cols=22  Identities=14%  Similarity=0.102  Sum_probs=19.7

Q ss_pred             EEEEEcCCCCCHHHHHHHHhhC
Q 036449            8 KCVTVGDGAVGKTCLLISYTSN   29 (197)
Q Consensus         8 ~i~v~G~~~~GKstli~~~~~~   29 (197)
                      .++++|+.|+|||||++.+.+-
T Consensus        30 ~~~i~G~nGsGKSTLl~~l~Gl   51 (243)
T 1mv5_A           30 IIAFAGPSGGGKSTIFSLLERF   51 (243)
T ss_dssp             EEEEECCTTSSHHHHHHHHTTS
T ss_pred             EEEEECCCCCCHHHHHHHHhcC
Confidence            4899999999999999988764

>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*

Probab=96.98  E-value=0.00047  Score=49.59  Aligned_cols=22  Identities=23%  Similarity=0.126  Sum_probs=19.7

Q ss_pred             EEEEEcCCCCCHHHHHHHHhhC
Q 036449            8 KCVTVGDGAVGKTCLLISYTSN   29 (197)
Q Consensus         8 ~i~v~G~~~~GKstli~~~~~~   29 (197)
                      .++++|+.|+|||||++.+.+-
T Consensus        37 ~~~i~G~nGsGKSTLl~~l~Gl   58 (247)
T 2ff7_A           37 VIGIVGRSGSGKSTLTKLIQRF   58 (247)
T ss_dssp             EEEEECSTTSSHHHHHHHHTTS
T ss_pred             EEEEECCCCCCHHHHHHHHhcC
Confidence            4789999999999999988765

>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*

Probab=96.98  E-value=0.00059  Score=50.20  Aligned_cols=25  Identities=20%  Similarity=0.106  Sum_probs=21.4

Q ss_pred             CceeEEEEEcCCCCCHHHHHHHHhh
Q 036449            4 SRFIKCVTVGDGAVGKTCLLISYTS   28 (197)
Q Consensus         4 ~~~~~i~v~G~~~~GKstli~~~~~   28 (197)
                      .+..-|++.|++||||||+.+.+..
T Consensus        31 ~~~~livl~G~sGsGKSTla~~L~~   55 (287)
T 1gvn_B           31 ESPTAFLLGGQPGSGKTSLRSAIFE   55 (287)
T ss_dssp             SSCEEEEEECCTTSCTHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHH
Confidence            3456799999999999999998864

>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*

Probab=96.97  E-value=0.00043  Score=50.06  Aligned_cols=22  Identities=23%  Similarity=0.317  Sum_probs=19.6

Q ss_pred             EEEEEcCCCCCHHHHHHHHhhC
Q 036449            8 KCVTVGDGAVGKTCLLISYTSN   29 (197)
Q Consensus         8 ~i~v~G~~~~GKstli~~~~~~   29 (197)
                      .++++|+.|+|||||++.+.+-
T Consensus        35 ~~~liG~nGsGKSTLlk~l~Gl   56 (257)
T 1g6h_A           35 VTLIIGPNGSGKSTLINVITGF   56 (257)
T ss_dssp             EEEEECSTTSSHHHHHHHHTTS
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            4789999999999999988765

>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1

Probab=96.97  E-value=0.00051  Score=46.99  Aligned_cols=22  Identities=23%  Similarity=0.261  Sum_probs=19.2

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhh
Q 036449            7 IKCVTVGDGAVGKTCLLISYTS   28 (197)
Q Consensus         7 ~~i~v~G~~~~GKstli~~~~~   28 (197)
                      ..|++.|.+||||||+.+.+..
T Consensus         2 ~~I~i~G~~GsGKsT~~~~L~~   23 (194)
T 1nks_A            2 KIGIVTGIPGVGKSTVLAKVKE   23 (194)
T ss_dssp             EEEEEEECTTSCHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHH
Confidence            3699999999999999987764

>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*

Probab=96.97  E-value=0.00056  Score=48.10  Aligned_cols=24  Identities=21%  Similarity=0.243  Sum_probs=20.8

Q ss_pred             ceeEEEEEcCCCCCHHHHHHHHhh
Q 036449            5 RFIKCVTVGDGAVGKTCLLISYTS   28 (197)
Q Consensus         5 ~~~~i~v~G~~~~GKstli~~~~~   28 (197)
                      +.+.|+++|.+||||||+.+.+..
T Consensus         3 ~~~~I~l~G~~GsGKsT~a~~La~   26 (220)
T 1aky_A            3 ESIRMVLIGPPGAGKGTQAPNLQE   26 (220)
T ss_dssp             CCCEEEEECCTTSSHHHHHHHHHH
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHH
Confidence            457899999999999999987754

>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A

Probab=96.97  E-value=0.00051  Score=48.80  Aligned_cols=22  Identities=27%  Similarity=0.376  Sum_probs=19.7

Q ss_pred             EEEEEcCCCCCHHHHHHHHhhC
Q 036449            8 KCVTVGDGAVGKTCLLISYTSN   29 (197)
Q Consensus         8 ~i~v~G~~~~GKstli~~~~~~   29 (197)
                      .++++|+.|+|||||++.+.+-
T Consensus        36 ~~~i~G~nGsGKSTLl~~l~Gl   57 (229)
T 2pze_A           36 LLAVAGSTGAGKTSLLMMIMGE   57 (229)
T ss_dssp             EEEEECCTTSSHHHHHHHHTTS
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            4789999999999999988765

>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A

Probab=96.96  E-value=0.00056  Score=46.75  Aligned_cols=22  Identities=23%  Similarity=0.060  Sum_probs=19.5

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhh
Q 036449            7 IKCVTVGDGAVGKTCLLISYTS   28 (197)
Q Consensus         7 ~~i~v~G~~~~GKstli~~~~~   28 (197)
                      ..|++.|.+||||||+.+.+..
T Consensus         4 ~~I~i~G~~GsGKsT~~~~L~~   25 (192)
T 1kht_A            4 KVVVVTGVPGVGSTTSSQLAMD   25 (192)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHH
Confidence            5799999999999999988754

>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*

Probab=96.96  E-value=0.00046  Score=50.09  Aligned_cols=22  Identities=23%  Similarity=0.312  Sum_probs=19.5

Q ss_pred             EEEEEcCCCCCHHHHHHHHhhC
Q 036449            8 KCVTVGDGAVGKTCLLISYTSN   29 (197)
Q Consensus         8 ~i~v~G~~~~GKstli~~~~~~   29 (197)
                      .++++|+.|+|||||++.+.+-
T Consensus        52 i~~liG~NGsGKSTLlk~l~Gl   73 (263)
T 2olj_A           52 VVVVIGPSGSGKSTFLRCLNLL   73 (263)
T ss_dssp             EEEEECCTTSSHHHHHHHHTTS
T ss_pred             EEEEEcCCCCcHHHHHHHHHcC
Confidence            4789999999999999988764

>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*

Probab=96.96  E-value=0.00049  Score=48.20  Aligned_cols=22  Identities=14%  Similarity=0.187  Sum_probs=19.3

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhh
Q 036449            7 IKCVTVGDGAVGKTCLLISYTS   28 (197)
Q Consensus         7 ~~i~v~G~~~~GKstli~~~~~   28 (197)
                      ++|++.|.+||||||+.+.+..
T Consensus         1 m~I~l~G~~GsGKsT~a~~L~~   22 (214)
T 1e4v_A            1 MRIILLGAPVAGKGTQAQFIME   22 (214)
T ss_dssp             CEEEEEESTTSSHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHH
Confidence            4799999999999999987754

>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}

Probab=96.95  E-value=0.00052  Score=47.60  Aligned_cols=22  Identities=14%  Similarity=0.197  Sum_probs=19.9

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhh
Q 036449            7 IKCVTVGDGAVGKTCLLISYTS   28 (197)
Q Consensus         7 ~~i~v~G~~~~GKstli~~~~~   28 (197)
                      .+|+++|.+||||||+.+.+..
T Consensus         2 ~~i~i~G~~GsGKSTl~~~L~~   23 (204)
T 2if2_A            2 KRIGLTGNIGCGKSTVAQMFRE   23 (204)
T ss_dssp             CEEEEEECTTSSHHHHHHHHHH
T ss_pred             eEEEEECCCCcCHHHHHHHHHH
Confidence            4799999999999999988876

>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12

Probab=96.94  E-value=0.00048  Score=49.29  Aligned_cols=22  Identities=23%  Similarity=0.276  Sum_probs=19.6

Q ss_pred             EEEEEcCCCCCHHHHHHHHhhC
Q 036449            8 KCVTVGDGAVGKTCLLISYTSN   29 (197)
Q Consensus         8 ~i~v~G~~~~GKstli~~~~~~   29 (197)
                      .++++|+.|+|||||++.+.+-
T Consensus        34 ~~~l~G~nGsGKSTLl~~l~Gl   55 (240)
T 1ji0_A           34 IVTLIGANGAGKTTTLSAIAGL   55 (240)
T ss_dssp             EEEEECSTTSSHHHHHHHHTTS
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            4789999999999999988764

>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*

Probab=96.94  E-value=0.00051  Score=49.47  Aligned_cols=22  Identities=18%  Similarity=0.214  Sum_probs=19.8

Q ss_pred             EEEEEcCCCCCHHHHHHHHhhC
Q 036449            8 KCVTVGDGAVGKTCLLISYTSN   29 (197)
Q Consensus         8 ~i~v~G~~~~GKstli~~~~~~   29 (197)
                      .++++|+.|+|||||++.+.+-
T Consensus        31 ~~~l~G~nGsGKSTLlk~l~Gl   52 (250)
T 2d2e_A           31 VHALMGPNGAGKSTLGKILAGD   52 (250)
T ss_dssp             EEEEECSTTSSHHHHHHHHHTC
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            4789999999999999998875

>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}

Probab=96.93  E-value=0.00054  Score=49.66  Aligned_cols=22  Identities=23%  Similarity=0.338  Sum_probs=19.7

Q ss_pred             EEEEEcCCCCCHHHHHHHHhhC
Q 036449            8 KCVTVGDGAVGKTCLLISYTSN   29 (197)
Q Consensus         8 ~i~v~G~~~~GKstli~~~~~~   29 (197)
                      .++++|+.|+|||||++.+.+-
T Consensus        48 ~~~i~G~nGsGKSTLl~~l~Gl   69 (260)
T 2ghi_A           48 TCALVGHTGSGKSTIAKLLYRF   69 (260)
T ss_dssp             EEEEECSTTSSHHHHHHHHTTS
T ss_pred             EEEEECCCCCCHHHHHHHHhcc
Confidence            4899999999999999988764

>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}

Probab=96.93  E-value=0.00046  Score=48.28  Aligned_cols=22  Identities=23%  Similarity=0.320  Sum_probs=19.3

Q ss_pred             EEEEEcCCCCCHHHHHHHHhhC
Q 036449            8 KCVTVGDGAVGKTCLLISYTSN   29 (197)
Q Consensus         8 ~i~v~G~~~~GKstli~~~~~~   29 (197)
                      .++++|+.|+|||||++.+.+-
T Consensus        24 ~~~liG~nGsGKSTLl~~l~Gl   45 (208)
T 3b85_A           24 IVFGLGPAGSGKTYLAMAKAVQ   45 (208)
T ss_dssp             EEEEECCTTSSTTHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHhcC
Confidence            4789999999999999888754

>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12

Probab=96.92  E-value=0.00052  Score=49.61  Aligned_cols=22  Identities=23%  Similarity=0.185  Sum_probs=19.6

Q ss_pred             EEEEEcCCCCCHHHHHHHHhhC
Q 036449            8 KCVTVGDGAVGKTCLLISYTSN   29 (197)
Q Consensus         8 ~i~v~G~~~~GKstli~~~~~~   29 (197)
                      .++++|+.|+|||||++.+.+-
T Consensus        43 i~~l~G~NGsGKSTLlk~l~Gl   64 (256)
T 1vpl_A           43 IFGLIGPNGAGKTTTLRIISTL   64 (256)
T ss_dssp             EEEEECCTTSSHHHHHHHHTTS
T ss_pred             EEEEECCCCCCHHHHHHHHhcC
Confidence            4789999999999999988764

>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C

Probab=96.92  E-value=0.00052  Score=49.39  Aligned_cols=22  Identities=27%  Similarity=0.302  Sum_probs=19.5

Q ss_pred             EEEEEcCCCCCHHHHHHHHhhC
Q 036449            8 KCVTVGDGAVGKTCLLISYTSN   29 (197)
Q Consensus         8 ~i~v~G~~~~GKstli~~~~~~   29 (197)
                      .++++|+.|+|||||++.+.+-
T Consensus        28 ~~~liG~NGsGKSTLlk~l~Gl   49 (249)
T 2qi9_C           28 ILHLVGPNGAGKSTLLARMAGM   49 (249)
T ss_dssp             EEEEECCTTSSHHHHHHHHTTS
T ss_pred             EEEEECCCCCcHHHHHHHHhCC
Confidence            4789999999999999988764

>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}

Probab=96.92  E-value=0.00039  Score=47.27  Aligned_cols=25  Identities=24%  Similarity=0.024  Sum_probs=16.4

Q ss_pred             CceeEEEEEcCCCCCHHHHHHHHhh
Q 036449            4 SRFIKCVTVGDGAVGKTCLLISYTS   28 (197)
Q Consensus         4 ~~~~~i~v~G~~~~GKstli~~~~~   28 (197)
                      .+...|++.|.+||||||+.+.+..
T Consensus         3 ~~~~~I~l~G~~GsGKST~a~~La~   27 (183)
T 2vli_A            3 MRSPIIWINGPFGVGKTHTAHTLHE   27 (183)
T ss_dssp             --CCEEEEECCC----CHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHH
Confidence            3456799999999999999988864

>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}

Probab=96.91  E-value=0.00059  Score=47.94  Aligned_cols=25  Identities=16%  Similarity=0.094  Sum_probs=21.3

Q ss_pred             CceeEEEEEcCCCCCHHHHHHHHhh
Q 036449            4 SRFIKCVTVGDGAVGKTCLLISYTS   28 (197)
Q Consensus         4 ~~~~~i~v~G~~~~GKstli~~~~~   28 (197)
                      .+.+.|+++|.+||||||+.+.+..
T Consensus         3 ~~~~~I~l~G~~GsGKsT~a~~La~   27 (217)
T 3be4_A            3 SKKHNLILIGAPGSGKGTQCEFIKK   27 (217)
T ss_dssp             GGCCEEEEEECTTSSHHHHHHHHHH
T ss_pred             CCceEEEEECCCCCCHHHHHHHHHH
Confidence            4557899999999999999987754

>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*

Probab=96.91  E-value=0.00077  Score=50.16  Aligned_cols=25  Identities=20%  Similarity=0.066  Sum_probs=21.0

Q ss_pred             CceeEEEEEcCCCCCHHHHHHHHhh
Q 036449            4 SRFIKCVTVGDGAVGKTCLLISYTS   28 (197)
Q Consensus         4 ~~~~~i~v~G~~~~GKstli~~~~~   28 (197)
                      .+..-|+++|++|||||||++.+.+
T Consensus        88 ~~g~ivgI~G~sGsGKSTL~~~L~g  112 (312)
T 3aez_A           88 PVPFIIGVAGSVAVGKSTTARVLQA  112 (312)
T ss_dssp             CCCEEEEEECCTTSCHHHHHHHHHH
T ss_pred             CCCEEEEEECCCCchHHHHHHHHHh
Confidence            3446799999999999999987765

>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*

Probab=96.91  E-value=0.00053  Score=50.02  Aligned_cols=22  Identities=18%  Similarity=0.187  Sum_probs=19.6

Q ss_pred             EEEEEcCCCCCHHHHHHHHhhC
Q 036449            8 KCVTVGDGAVGKTCLLISYTSN   29 (197)
Q Consensus         8 ~i~v~G~~~~GKstli~~~~~~   29 (197)
                      .++++|+.|+|||||++.+.+-
T Consensus        47 ~~~i~G~nGsGKSTLlk~l~Gl   68 (271)
T 2ixe_A           47 VTALVGPNGSGKSTVAALLQNL   68 (271)
T ss_dssp             EEEEECSTTSSHHHHHHHHTTS
T ss_pred             EEEEECCCCCCHHHHHHHHhcC
Confidence            4789999999999999988765

>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6

Probab=96.91  E-value=0.0008  Score=49.56  Aligned_cols=24  Identities=17%  Similarity=0.037  Sum_probs=20.4

Q ss_pred             CceeEEEEEcCCCCCHHHHHHHHh
Q 036449            4 SRFIKCVTVGDGAVGKTCLLISYT   27 (197)
Q Consensus         4 ~~~~~i~v~G~~~~GKstli~~~~   27 (197)
                      .+...|+|+|++|||||||++.+.
T Consensus        29 ~~~~ii~I~G~sGsGKSTla~~L~   52 (290)
T 1odf_A           29 KCPLFIFFSGPQGSGKSFTSIQIY   52 (290)
T ss_dssp             CSCEEEEEECCTTSSHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHH
Confidence            456789999999999999997654

>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A

Probab=96.90  E-value=0.00058  Score=49.70  Aligned_cols=22  Identities=18%  Similarity=0.283  Sum_probs=19.8

Q ss_pred             EEEEEcCCCCCHHHHHHHHhhC
Q 036449            8 KCVTVGDGAVGKTCLLISYTSN   29 (197)
Q Consensus         8 ~i~v~G~~~~GKstli~~~~~~   29 (197)
                      .++++|+.|+|||||++.+.+-
T Consensus        48 ~~~l~G~NGsGKSTLlk~l~Gl   69 (267)
T 2zu0_C           48 VHAIMGPNGSGKSTLSATLAGR   69 (267)
T ss_dssp             EEEEECCTTSSHHHHHHHHHTC
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            4789999999999999988875

>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}

Probab=96.89  E-value=0.00082  Score=50.18  Aligned_cols=25  Identities=20%  Similarity=0.021  Sum_probs=20.9

Q ss_pred             CceeEEEEEcCCCCCHHHHHHHHhh
Q 036449            4 SRFIKCVTVGDGAVGKTCLLISYTS   28 (197)
Q Consensus         4 ~~~~~i~v~G~~~~GKstli~~~~~   28 (197)
                      .+.+-|.++|++|||||||++.+..
T Consensus        90 ~~p~iigI~GpsGSGKSTl~~~L~~  114 (321)
T 3tqc_A           90 KVPYIIGIAGSVAVGKSTTSRVLKA  114 (321)
T ss_dssp             CCCEEEEEECCTTSSHHHHHHHHHH
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHH
Confidence            3457799999999999999977653

>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*

Probab=96.89  E-value=0.00064  Score=46.19  Aligned_cols=22  Identities=32%  Similarity=0.317  Sum_probs=19.3

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhh
Q 036449            7 IKCVTVGDGAVGKTCLLISYTS   28 (197)
Q Consensus         7 ~~i~v~G~~~~GKstli~~~~~   28 (197)
                      -.+++.|++|+|||||++.+.+
T Consensus        39 ~~~~l~G~~G~GKTtL~~~i~~   60 (180)
T 3ec2_A           39 KGLTFVGSPGVGKTHLAVATLK   60 (180)
T ss_dssp             CEEEECCSSSSSHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHH
Confidence            4689999999999999987764

>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}

Probab=96.89  E-value=0.00027  Score=47.89  Aligned_cols=22  Identities=27%  Similarity=0.282  Sum_probs=19.3

Q ss_pred             EEEEEcCCCCCHHHHHHHHhhC
Q 036449            8 KCVTVGDGAVGKTCLLISYTSN   29 (197)
Q Consensus         8 ~i~v~G~~~~GKstli~~~~~~   29 (197)
                      .|+++|++|+|||||++.+..-
T Consensus         4 ~v~IvG~SGsGKSTL~~~L~~~   25 (171)
T 2f1r_A            4 ILSIVGTSDSGKTTLITRMMPI   25 (171)
T ss_dssp             EEEEEESCHHHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            5899999999999999887753

>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6

Probab=96.89  E-value=0.00084  Score=46.56  Aligned_cols=25  Identities=20%  Similarity=0.066  Sum_probs=20.9

Q ss_pred             CceeEEEEEcCCCCCHHHHHHHHhh
Q 036449            4 SRFIKCVTVGDGAVGKTCLLISYTS   28 (197)
Q Consensus         4 ~~~~~i~v~G~~~~GKstli~~~~~   28 (197)
                      .+...|.++|++|+||||+++.+..
T Consensus        20 ~~~~~i~i~G~~GsGKstl~~~l~~   44 (201)
T 1rz3_A           20 AGRLVLGIDGLSRSGKTTLANQLSQ   44 (201)
T ss_dssp             SSSEEEEEEECTTSSHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHH
Confidence            3456799999999999999987764

>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1

Probab=96.89  E-value=0.00055  Score=48.19  Aligned_cols=24  Identities=21%  Similarity=0.130  Sum_probs=20.6

Q ss_pred             ceeEEEEEcCCCCCHHHHHHHHhh
Q 036449            5 RFIKCVTVGDGAVGKTCLLISYTS   28 (197)
Q Consensus         5 ~~~~i~v~G~~~~GKstli~~~~~   28 (197)
                      +...|+++|++||||||+.+.+..
T Consensus         4 ~~~~I~l~G~~GsGKsT~~~~La~   27 (222)
T 1zak_A            4 DPLKVMISGAPASGKGTQCELIKT   27 (222)
T ss_dssp             CSCCEEEEESTTSSHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHH
Confidence            446899999999999999987754

>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}

Probab=96.89  E-value=0.00064  Score=46.31  Aligned_cols=22  Identities=18%  Similarity=0.129  Sum_probs=19.5

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhh
Q 036449            7 IKCVTVGDGAVGKTCLLISYTS   28 (197)
Q Consensus         7 ~~i~v~G~~~~GKstli~~~~~   28 (197)
                      ..|+++|++||||||+.+.+..
T Consensus         6 ~~i~l~G~~GsGKst~a~~La~   27 (185)
T 3trf_A            6 TNIYLIGLMGAGKTSVGSQLAK   27 (185)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHH
Confidence            4799999999999999988754

>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A

Probab=96.89  E-value=0.00075  Score=47.35  Aligned_cols=23  Identities=13%  Similarity=0.153  Sum_probs=20.6

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHhh
Q 036449            6 FIKCVTVGDGAVGKTCLLISYTS   28 (197)
Q Consensus         6 ~~~i~v~G~~~~GKstli~~~~~   28 (197)
                      .+.|++.|.+||||||+.+.+..
T Consensus         4 ~~~I~i~G~~GSGKST~~~~L~~   26 (218)
T 1vht_A            4 RYIVALTGGIGSGKSTVANAFAD   26 (218)
T ss_dssp             CEEEEEECCTTSCHHHHHHHHHH
T ss_pred             ceEEEEECCCCCCHHHHHHHHHH
Confidence            47899999999999999988865

>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1

Probab=96.88  E-value=0.00076  Score=46.17  Aligned_cols=23  Identities=13%  Similarity=0.125  Sum_probs=19.9

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHhh
Q 036449            6 FIKCVTVGDGAVGKTCLLISYTS   28 (197)
Q Consensus         6 ~~~i~v~G~~~~GKstli~~~~~   28 (197)
                      ...|++.|.+||||||+.+.+..
T Consensus         3 ~~~I~l~G~~GsGKsT~a~~L~~   25 (196)
T 1tev_A            3 PLVVFVLGGPGAGKGTQCARIVE   25 (196)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHH
T ss_pred             ceEEEEECCCCCCHHHHHHHHHH
Confidence            46799999999999999987754

>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}

Probab=96.88  E-value=0.00064  Score=49.78  Aligned_cols=22  Identities=32%  Similarity=0.333  Sum_probs=19.6

Q ss_pred             EEEEEcCCCCCHHHHHHHHhhC
Q 036449            8 KCVTVGDGAVGKTCLLISYTSN   29 (197)
Q Consensus         8 ~i~v~G~~~~GKstli~~~~~~   29 (197)
                      .++++|+.|+|||||++.+.+-
T Consensus        49 ~~~liG~NGsGKSTLlk~l~Gl   70 (279)
T 2ihy_A           49 KWILYGLNGAGKTTLLNILNAY   70 (279)
T ss_dssp             EEEEECCTTSSHHHHHHHHTTS
T ss_pred             EEEEECCCCCcHHHHHHHHhCC
Confidence            4789999999999999988764

>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8

Probab=96.87  E-value=0.00074  Score=50.01  Aligned_cols=23  Identities=26%  Similarity=0.312  Sum_probs=20.3

Q ss_pred             EEEEEcCCCCCHHHHHHHHhhCC
Q 036449            8 KCVTVGDGAVGKTCLLISYTSNT   30 (197)
Q Consensus         8 ~i~v~G~~~~GKstli~~~~~~~   30 (197)
                      .++++|++|+|||||++.+.+..
T Consensus       171 iv~l~G~sG~GKSTll~~l~g~~  193 (301)
T 1u0l_A          171 ISTMAGLSGVGKSSLLNAINPGL  193 (301)
T ss_dssp             EEEEECSTTSSHHHHHHHHSTTC
T ss_pred             eEEEECCCCCcHHHHHHHhcccc
Confidence            47899999999999999998654

>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}

Probab=96.87  E-value=0.00054  Score=47.72  Aligned_cols=21  Identities=24%  Similarity=0.292  Sum_probs=18.7

Q ss_pred             EEEEEcCCCCCHHHHHHHHhh
Q 036449            8 KCVTVGDGAVGKTCLLISYTS   28 (197)
Q Consensus         8 ~i~v~G~~~~GKstli~~~~~   28 (197)
                      .+++.|++|+|||++++.+..
T Consensus        40 ~~ll~G~~G~GKT~l~~~l~~   60 (226)
T 2chg_A           40 HLLFSGPPGTGKTATAIALAR   60 (226)
T ss_dssp             CEEEECSTTSSHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHH
Confidence            499999999999999987765

>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*

Probab=96.87  E-value=0.00079  Score=48.21  Aligned_cols=24  Identities=21%  Similarity=0.124  Sum_probs=20.5

Q ss_pred             ceeEEEEEcCCCCCHHHHHHHHhh
Q 036449            5 RFIKCVTVGDGAVGKTCLLISYTS   28 (197)
Q Consensus         5 ~~~~i~v~G~~~~GKstli~~~~~   28 (197)
                      +...|.++|+.|||||||++.+.+
T Consensus        24 ~g~iigI~G~~GsGKSTl~k~L~~   47 (245)
T 2jeo_A           24 RPFLIGVSGGTASGKSTVCEKIME   47 (245)
T ss_dssp             CSEEEEEECSTTSSHHHHHHHHHH
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHH
Confidence            345799999999999999987765

>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}

Probab=96.87  E-value=0.0006  Score=49.20  Aligned_cols=22  Identities=23%  Similarity=0.243  Sum_probs=19.6

Q ss_pred             EEEEEcCCCCCHHHHHHHHhhC
Q 036449            8 KCVTVGDGAVGKTCLLISYTSN   29 (197)
Q Consensus         8 ~i~v~G~~~~GKstli~~~~~~   29 (197)
                      .++++|+.|+|||||++.+.+-
T Consensus        33 ~~~l~G~nGsGKSTLl~~l~Gl   54 (253)
T 2nq2_C           33 ILAVLGQNGCGKSTLLDLLLGI   54 (253)
T ss_dssp             EEEEECCSSSSHHHHHHHHTTS
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            4789999999999999988765

>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}

Probab=96.86  E-value=0.00041  Score=49.20  Aligned_cols=23  Identities=17%  Similarity=0.153  Sum_probs=15.1

Q ss_pred             eEEEEEcCCCCCHHHHHHHHh-hC
Q 036449            7 IKCVTVGDGAVGKTCLLISYT-SN   29 (197)
Q Consensus         7 ~~i~v~G~~~~GKstli~~~~-~~   29 (197)
                      --|+++|++|||||||++.+. +.
T Consensus        28 ~ii~l~Gp~GsGKSTl~~~L~~~~   51 (231)
T 3lnc_A           28 VILVLSSPSGCGKTTVANKLLEKQ   51 (231)
T ss_dssp             CEEEEECSCC----CHHHHHHC--
T ss_pred             CEEEEECCCCCCHHHHHHHHHhcC
Confidence            358999999999999999988 53

>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}

Probab=96.86  E-value=0.00073  Score=45.21  Aligned_cols=22  Identities=14%  Similarity=0.131  Sum_probs=19.5

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhh
Q 036449            7 IKCVTVGDGAVGKTCLLISYTS   28 (197)
Q Consensus         7 ~~i~v~G~~~~GKstli~~~~~   28 (197)
                      ++|++.|.+||||||+.+.+..
T Consensus         1 m~I~l~G~~GsGKsT~a~~L~~   22 (168)
T 2pt5_A            1 MRIYLIGFMCSGKSTVGSLLSR   22 (168)
T ss_dssp             CEEEEESCTTSCHHHHHHHHHH
T ss_pred             CeEEEECCCCCCHHHHHHHHHH
Confidence            3799999999999999988765

>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1

Probab=96.86  E-value=0.00078  Score=46.78  Aligned_cols=22  Identities=23%  Similarity=0.167  Sum_probs=19.9

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhh
Q 036449            7 IKCVTVGDGAVGKTCLLISYTS   28 (197)
Q Consensus         7 ~~i~v~G~~~~GKstli~~~~~   28 (197)
                      +.|.++|++||||||+.+.+..
T Consensus         3 ~~i~l~G~~GsGKST~~~~La~   24 (206)
T 1jjv_A            3 YIVGLTGGIGSGKTTIANLFTD   24 (206)
T ss_dssp             EEEEEECSTTSCHHHHHHHHHT
T ss_pred             cEEEEECCCCCCHHHHHHHHHH
Confidence            5799999999999999988865

>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}

Probab=96.84  E-value=0.00064  Score=49.42  Aligned_cols=22  Identities=23%  Similarity=0.256  Sum_probs=19.4

Q ss_pred             EEEEEcCCCCCHHHHHHHHhhC
Q 036449            8 KCVTVGDGAVGKTCLLISYTSN   29 (197)
Q Consensus         8 ~i~v~G~~~~GKstli~~~~~~   29 (197)
                      .++++|+.|+|||||++.+.+-
T Consensus        35 ~~~liG~nGsGKSTLl~~i~Gl   56 (266)
T 2yz2_A           35 CLLVAGNTGSGKSTLLQIVAGL   56 (266)
T ss_dssp             EEEEECSTTSSHHHHHHHHTTS
T ss_pred             EEEEECCCCCcHHHHHHHHhCC
Confidence            4789999999999999988764

>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*

Probab=96.84  E-value=0.00083  Score=46.74  Aligned_cols=24  Identities=17%  Similarity=-0.074  Sum_probs=20.9

Q ss_pred             ceeEEEEEcCCCCCHHHHHHHHhh
Q 036449            5 RFIKCVTVGDGAVGKTCLLISYTS   28 (197)
Q Consensus         5 ~~~~i~v~G~~~~GKstli~~~~~   28 (197)
                      +...|++.|.+||||||+.+.+..
T Consensus         9 ~~~~I~l~G~~GsGKST~~~~L~~   32 (212)
T 2wwf_A            9 KGKFIVFEGLDRSGKSTQSKLLVE   32 (212)
T ss_dssp             CSCEEEEEESTTSSHHHHHHHHHH
T ss_pred             cCCEEEEEcCCCCCHHHHHHHHHH
Confidence            457899999999999999988764

>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A

Probab=96.83  E-value=0.00075  Score=46.32  Aligned_cols=24  Identities=17%  Similarity=0.066  Sum_probs=20.4

Q ss_pred             ceeEEEEEcCCCCCHHHHHHHHhh
Q 036449            5 RFIKCVTVGDGAVGKTCLLISYTS   28 (197)
Q Consensus         5 ~~~~i~v~G~~~~GKstli~~~~~   28 (197)
                      +...|++.|.+||||||+.+.+..
T Consensus         8 ~~~~I~l~G~~GsGKsT~~~~La~   31 (196)
T 2c95_A            8 KTNIIFVVGGPGSGKGTQCEKIVQ   31 (196)
T ss_dssp             TSCEEEEEECTTSSHHHHHHHHHH
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHH
Confidence            346799999999999999987754

>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10

Probab=96.83  E-value=0.00089  Score=45.15  Aligned_cols=23  Identities=26%  Similarity=0.293  Sum_probs=19.8

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHhh
Q 036449            6 FIKCVTVGDGAVGKTCLLISYTS   28 (197)
Q Consensus         6 ~~~i~v~G~~~~GKstli~~~~~   28 (197)
                      ...+.++|.+|+|||||+.++..
T Consensus         4 ~~~i~i~G~sGsGKTTl~~~L~~   26 (169)
T 1xjc_A            4 MNVWQVVGYKHSGKTTLMEKWVA   26 (169)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHH
T ss_pred             CEEEEEECCCCCCHHHHHHHHHH
Confidence            34689999999999999988775

>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*

Probab=96.82  E-value=0.00099  Score=46.31  Aligned_cols=25  Identities=20%  Similarity=0.127  Sum_probs=21.4

Q ss_pred             ceeEEEEEcCCCCCHHHHHHHHhhC
Q 036449            5 RFIKCVTVGDGAVGKTCLLISYTSN   29 (197)
Q Consensus         5 ~~~~i~v~G~~~~GKstli~~~~~~   29 (197)
                      +...|+++|++|+||||+.+.+...
T Consensus        20 ~~~~i~i~G~~GsGKSTl~~~L~~~   44 (207)
T 2qt1_A           20 KTFIIGISGVTNSGKTTLAKNLQKH   44 (207)
T ss_dssp             CCEEEEEEESTTSSHHHHHHHHHTT
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHh
Confidence            3467999999999999999888764

>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*

Probab=96.82  E-value=0.00083  Score=47.41  Aligned_cols=22  Identities=14%  Similarity=0.095  Sum_probs=19.2

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhh
Q 036449            7 IKCVTVGDGAVGKTCLLISYTS   28 (197)
Q Consensus         7 ~~i~v~G~~~~GKstli~~~~~   28 (197)
                      +.|++.|.+||||||+.+.+..
T Consensus         1 m~I~l~G~~GsGKsT~a~~La~   22 (223)
T 2xb4_A            1 MNILIFGPNGSGKGTQGNLVKD   22 (223)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHH
Confidence            3699999999999999987754

>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}

Probab=96.81  E-value=0.0008  Score=48.82  Aligned_cols=23  Identities=30%  Similarity=0.417  Sum_probs=20.1

Q ss_pred             EEEEEcCCCCCHHHHHHHHhhCC
Q 036449            8 KCVTVGDGAVGKTCLLISYTSNT   30 (197)
Q Consensus         8 ~i~v~G~~~~GKstli~~~~~~~   30 (197)
                      .++++|+.|+|||||++.+.+-.
T Consensus        32 ~~~i~G~NGsGKSTLlk~l~Gl~   54 (263)
T 2pjz_A           32 KVIILGPNGSGKTTLLRAISGLL   54 (263)
T ss_dssp             EEEEECCTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            47899999999999999887653

>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*

Probab=96.80  E-value=0.00069  Score=47.73  Aligned_cols=22  Identities=23%  Similarity=0.132  Sum_probs=19.6

Q ss_pred             EEEEEcCCCCCHHHHHHHHhhC
Q 036449            8 KCVTVGDGAVGKTCLLISYTSN   29 (197)
Q Consensus         8 ~i~v~G~~~~GKstli~~~~~~   29 (197)
                      -++++|++|+|||||++.+...
T Consensus        27 ~~~l~G~nGsGKSTll~~l~g~   48 (231)
T 4a74_A           27 ITEVFGEFGSGKTQLAHTLAVM   48 (231)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            4789999999999999998764

>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}

Probab=96.80  E-value=0.00098  Score=48.00  Aligned_cols=21  Identities=19%  Similarity=0.143  Sum_probs=19.3

Q ss_pred             eEEEEEcCCCCCHHHHHHHHh
Q 036449            7 IKCVTVGDGAVGKTCLLISYT   27 (197)
Q Consensus         7 ~~i~v~G~~~~GKstli~~~~   27 (197)
                      ..|.++|++||||||+++.+.
T Consensus        28 ~~I~I~G~~GsGKSTl~k~La   48 (252)
T 4e22_A           28 PVITVDGPSGAGKGTLCKALA   48 (252)
T ss_dssp             CEEEEECCTTSSHHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHHH
Confidence            579999999999999998876

>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2

Probab=96.79  E-value=0.00074  Score=45.65  Aligned_cols=21  Identities=24%  Similarity=0.241  Sum_probs=18.8

Q ss_pred             EEEEEcCCCCCHHHHHHHHhh
Q 036449            8 KCVTVGDGAVGKTCLLISYTS   28 (197)
Q Consensus         8 ~i~v~G~~~~GKstli~~~~~   28 (197)
                      +|+++|++||||||+.+.+..
T Consensus         6 ~i~i~G~~GsGKsTla~~La~   26 (175)
T 1via_A            6 NIVFIGFMGSGKSTLARALAK   26 (175)
T ss_dssp             CEEEECCTTSCHHHHHHHHHH
T ss_pred             EEEEEcCCCCCHHHHHHHHHH
Confidence            699999999999999987754

>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1

Probab=96.79  E-value=0.00096  Score=46.04  Aligned_cols=26  Identities=19%  Similarity=0.060  Sum_probs=22.5

Q ss_pred             CceeEEEEEcCCCCCHHHHHHHHhhC
Q 036449            4 SRFIKCVTVGDGAVGKTCLLISYTSN   29 (197)
Q Consensus         4 ~~~~~i~v~G~~~~GKstli~~~~~~   29 (197)
                      .+...|+++|.+||||||+.+.+...
T Consensus         6 ~~~~~I~i~G~~GsGKST~~~~La~~   31 (203)
T 1uf9_A            6 KHPIIIGITGNIGSGKSTVAALLRSW   31 (203)
T ss_dssp             CCCEEEEEEECTTSCHHHHHHHHHHT
T ss_pred             cCceEEEEECCCCCCHHHHHHHHHHC
Confidence            34578999999999999999888765

>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}

Probab=96.79  E-value=0.0011  Score=43.49  Aligned_cols=25  Identities=12%  Similarity=-0.087  Sum_probs=21.4

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHhhCC
Q 036449            6 FIKCVTVGDGAVGKTCLLISYTSNT   30 (197)
Q Consensus         6 ~~~i~v~G~~~~GKstli~~~~~~~   30 (197)
                      ...|++.|++|+|||++.+.+....
T Consensus        24 ~~~vll~G~~GtGKt~lA~~i~~~~   48 (145)
T 3n70_A           24 DIAVWLYGAPGTGRMTGARYLHQFG   48 (145)
T ss_dssp             CSCEEEESSTTSSHHHHHHHHHHSS
T ss_pred             CCCEEEECCCCCCHHHHHHHHHHhC
Confidence            3569999999999999999887653

>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=96.79  E-value=0.0022  Score=48.33  Aligned_cols=21  Identities=14%  Similarity=0.216  Sum_probs=18.8

Q ss_pred             EEEEEcCCCCCHHHHHHHHhh
Q 036449            8 KCVTVGDGAVGKTCLLISYTS   28 (197)
Q Consensus         8 ~i~v~G~~~~GKstli~~~~~   28 (197)
                      ++++.|++|+||||+++.+.+
T Consensus        38 ~~ll~Gp~G~GKTtl~~~la~   58 (354)
T 1sxj_E           38 HLLLYGPNGTGKKTRCMALLE   58 (354)
T ss_dssp             CEEEECSTTSSHHHHHHTHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHH
Confidence            499999999999999987765

>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1

Probab=96.78  E-value=0.00068  Score=51.58  Aligned_cols=24  Identities=17%  Similarity=0.236  Sum_probs=20.9

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHhhC
Q 036449            6 FIKCVTVGDGAVGKTCLLISYTSN   29 (197)
Q Consensus         6 ~~~i~v~G~~~~GKstli~~~~~~   29 (197)
                      .-+++++|++|+|||||++.+.+.
T Consensus       170 g~k~~IvG~nGsGKSTLlk~L~gl  193 (365)
T 1lw7_A          170 AKTVAILGGESSGKSVLVNKLAAV  193 (365)
T ss_dssp             CEEEEEECCTTSHHHHHHHHHHHH
T ss_pred             hCeEEEECCCCCCHHHHHHHHHHH
Confidence            347999999999999999988764

>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*

Probab=96.77  E-value=0.00078  Score=51.09  Aligned_cols=21  Identities=19%  Similarity=0.268  Sum_probs=19.1

Q ss_pred             EEEEEcCCCCCHHHHHHHHhh
Q 036449            8 KCVTVGDGAVGKTCLLISYTS   28 (197)
Q Consensus         8 ~i~v~G~~~~GKstli~~~~~   28 (197)
                      .|+++|++|||||||++.+.+
T Consensus       125 ~i~I~GptGSGKTTlL~~l~g  145 (356)
T 3jvv_A          125 LVLVTGPTGSGKSTTLAAMLD  145 (356)
T ss_dssp             EEEEECSTTSCHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHh
Confidence            689999999999999988765

>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*

Probab=96.76  E-value=0.00053  Score=50.88  Aligned_cols=22  Identities=23%  Similarity=0.234  Sum_probs=19.5

Q ss_pred             EEEEEcCCCCCHHHHHHHHhhC
Q 036449            8 KCVTVGDGAVGKTCLLISYTSN   29 (197)
Q Consensus         8 ~i~v~G~~~~GKstli~~~~~~   29 (197)
                      .++++|++|+|||||++.+.+-
T Consensus        82 ~vaivG~sGsGKSTLl~ll~gl  103 (306)
T 3nh6_A           82 TLALVGPSGAGKSTILRLLFRF  103 (306)
T ss_dssp             EEEEESSSCHHHHHHHHHHTTS
T ss_pred             EEEEECCCCchHHHHHHHHHcC
Confidence            5899999999999999888764

>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*

Probab=96.75  E-value=0.00084  Score=49.79  Aligned_cols=22  Identities=27%  Similarity=0.235  Sum_probs=19.0

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHh
Q 036449            6 FIKCVTVGDGAVGKTCLLISYT   27 (197)
Q Consensus         6 ~~~i~v~G~~~~GKstli~~~~   27 (197)
                      .-.|+++|++||||||+++.+.
T Consensus       102 g~vi~lvG~nGsGKTTll~~La  123 (304)
T 1rj9_A          102 GRVVLVVGVNGVGKTTTIAKLG  123 (304)
T ss_dssp             SSEEEEECSTTSSHHHHHHHHH
T ss_pred             CeEEEEECCCCCcHHHHHHHHH
Confidence            3468999999999999998765

>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}

Probab=96.75  E-value=0.00064  Score=44.89  Aligned_cols=22  Identities=23%  Similarity=0.367  Sum_probs=19.2

Q ss_pred             EEEEEcCCCCCHHHHHHHHhhC
Q 036449            8 KCVTVGDGAVGKTCLLISYTSN   29 (197)
Q Consensus         8 ~i~v~G~~~~GKstli~~~~~~   29 (197)
                      .++++|++|+|||+|++.+...
T Consensus        38 ~~~l~G~~G~GKTtL~~~i~~~   59 (149)
T 2kjq_A           38 FIYVWGEEGAGKSHLLQAWVAQ   59 (149)
T ss_dssp             EEEEESSSTTTTCHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            4789999999999999887753

>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}

Probab=96.74  E-value=0.0014  Score=44.65  Aligned_cols=24  Identities=21%  Similarity=0.142  Sum_probs=20.4

Q ss_pred             ceeEEEEEcCCCCCHHHHHHHHhh
Q 036449            5 RFIKCVTVGDGAVGKTCLLISYTS   28 (197)
Q Consensus         5 ~~~~i~v~G~~~~GKstli~~~~~   28 (197)
                      +...|+++|.+|+||||+.+.+..
T Consensus        12 ~~~~i~l~G~~GsGKsT~~~~L~~   35 (186)
T 2yvu_A           12 KGIVVWLTGLPGSGKTTIATRLAD   35 (186)
T ss_dssp             CCEEEEEECCTTSSHHHHHHHHHH
T ss_pred             CCcEEEEEcCCCCCHHHHHHHHHH
Confidence            346799999999999999987754

>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*

Probab=96.72  E-value=0.0012  Score=46.86  Aligned_cols=24  Identities=17%  Similarity=0.227  Sum_probs=20.6

Q ss_pred             ceeEEEEEcCCCCCHHHHHHHHhh
Q 036449            5 RFIKCVTVGDGAVGKTCLLISYTS   28 (197)
Q Consensus         5 ~~~~i~v~G~~~~GKstli~~~~~   28 (197)
                      +..+|+++|.+||||||+.+.+..
T Consensus        15 ~~~~I~l~G~~GsGKsT~a~~La~   38 (233)
T 1ak2_A           15 KGVRAVLLGPPGAGKGTQAPKLAK   38 (233)
T ss_dssp             CCCEEEEECCTTSSHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHH
Confidence            346899999999999999987764

>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20

Probab=96.72  E-value=0.0011  Score=44.92  Aligned_cols=22  Identities=27%  Similarity=0.419  Sum_probs=19.2

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhh
Q 036449            7 IKCVTVGDGAVGKTCLLISYTS   28 (197)
Q Consensus         7 ~~i~v~G~~~~GKstli~~~~~   28 (197)
                      -.+++.|++|+|||++++.+..
T Consensus        44 ~~~ll~G~~G~GKT~l~~~~~~   65 (195)
T 1jbk_A           44 NNPVLIGEPGVGKTAIVEGLAQ   65 (195)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHH
T ss_pred             CceEEECCCCCCHHHHHHHHHH
Confidence            4689999999999999987764

>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}

Probab=96.70  E-value=0.0011  Score=45.26  Aligned_cols=21  Identities=19%  Similarity=0.011  Sum_probs=18.9

Q ss_pred             EEEEEcCCCCCHHHHHHHHhh
Q 036449            8 KCVTVGDGAVGKTCLLISYTS   28 (197)
Q Consensus         8 ~i~v~G~~~~GKstli~~~~~   28 (197)
                      .|++.|.+||||||+.+.+..
T Consensus         2 ~I~l~G~~GsGKsT~~~~L~~   22 (195)
T 2pbr_A            2 LIAFEGIDGSGKTTQAKKLYE   22 (195)
T ss_dssp             EEEEECSTTSCHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            589999999999999988765

>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}

Probab=96.69  E-value=0.00087  Score=48.27  Aligned_cols=24  Identities=21%  Similarity=0.174  Sum_probs=20.8

Q ss_pred             ceeEEEEEcCCCCCHHHHHHHHhh
Q 036449            5 RFIKCVTVGDGAVGKTCLLISYTS   28 (197)
Q Consensus         5 ~~~~i~v~G~~~~GKstli~~~~~   28 (197)
                      ....|+++|++||||||+.+.+..
T Consensus        31 ~~~~i~l~G~~GsGKSTla~~L~~   54 (253)
T 2p5t_B           31 QPIAILLGGQSGAGKTTIHRIKQK   54 (253)
T ss_dssp             SCEEEEEESCGGGTTHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHH
Confidence            456899999999999999988764

>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}

Probab=96.69  E-value=0.00089  Score=50.71  Aligned_cols=22  Identities=27%  Similarity=0.359  Sum_probs=19.5

Q ss_pred             EEEEcCCCCCHHHHHHHHhhCC
Q 036449            9 CVTVGDGAVGKTCLLISYTSNT   30 (197)
Q Consensus         9 i~v~G~~~~GKstli~~~~~~~   30 (197)
                      ++++|++|+|||||++.+.+-.
T Consensus        33 ~~llGpsGsGKSTLLr~iaGl~   54 (359)
T 3fvq_A           33 LFIIGASGCGKTTLLRCLAGFE   54 (359)
T ss_dssp             EEEEESTTSSHHHHHHHHHTSS
T ss_pred             EEEECCCCchHHHHHHHHhcCC
Confidence            7899999999999999888753

>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*

Probab=96.68  E-value=0.001  Score=49.02  Aligned_cols=22  Identities=27%  Similarity=0.376  Sum_probs=19.5

Q ss_pred             EEEEEcCCCCCHHHHHHHHhhC
Q 036449            8 KCVTVGDGAVGKTCLLISYTSN   29 (197)
Q Consensus         8 ~i~v~G~~~~GKstli~~~~~~   29 (197)
                      .++++|+.|+|||||++.+.+-
T Consensus        66 ~~~i~G~NGsGKSTLlk~l~Gl   87 (290)
T 2bbs_A           66 LLAVAGSTGAGKTSLLMMIMGE   87 (290)
T ss_dssp             EEEEEESTTSSHHHHHHHHTTS
T ss_pred             EEEEECCCCCcHHHHHHHHhcC
Confidence            4789999999999999988764

>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C

Probab=96.67  E-value=0.0011  Score=50.41  Aligned_cols=21  Identities=19%  Similarity=0.259  Sum_probs=19.0

Q ss_pred             EEEEcCCCCCHHHHHHHHhhC
Q 036449            9 CVTVGDGAVGKTCLLISYTSN   29 (197)
Q Consensus         9 i~v~G~~~~GKstli~~~~~~   29 (197)
                      ++++|++|+|||||++.+.+-
T Consensus        57 ~~IiGpnGaGKSTLlr~i~GL   77 (366)
T 3tui_C           57 YGVIGASGAGKSTLIRCVNLL   77 (366)
T ss_dssp             EEEECCTTSSHHHHHHHHHTS
T ss_pred             EEEEcCCCchHHHHHHHHhcC
Confidence            789999999999999888764

>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*

Probab=96.67  E-value=0.0013  Score=47.61  Aligned_cols=23  Identities=17%  Similarity=0.251  Sum_probs=20.1

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHhh
Q 036449            6 FIKCVTVGDGAVGKTCLLISYTS   28 (197)
Q Consensus         6 ~~~i~v~G~~~~GKstli~~~~~   28 (197)
                      ...|+++|.+||||||+.+.+..
T Consensus         4 ~~lIvl~G~pGSGKSTla~~La~   26 (260)
T 3a4m_A            4 IMLIILTGLPGVGKSTFSKNLAK   26 (260)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHH
T ss_pred             CEEEEEEcCCCCCHHHHHHHHHH
Confidence            35799999999999999988764

>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}

Probab=96.66  E-value=0.0011  Score=50.27  Aligned_cols=22  Identities=23%  Similarity=0.199  Sum_probs=19.4

Q ss_pred             EEEEEcCCCCCHHHHHHHHhhC
Q 036449            8 KCVTVGDGAVGKTCLLISYTSN   29 (197)
Q Consensus         8 ~i~v~G~~~~GKstli~~~~~~   29 (197)
                      -++++|++|+|||||++.+.+-
T Consensus        43 ~~~llGpnGsGKSTLLr~iaGl   64 (355)
T 1z47_A           43 MVGLLGPSGSGKTTILRLIAGL   64 (355)
T ss_dssp             EEEEECSTTSSHHHHHHHHHTS
T ss_pred             EEEEECCCCCcHHHHHHHHhCC
Confidence            3789999999999999988764

>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*

Probab=96.65  E-value=0.0011  Score=50.53  Aligned_cols=21  Identities=19%  Similarity=0.260  Sum_probs=19.1

Q ss_pred             EEEEEcCCCCCHHHHHHHHhh
Q 036449            8 KCVTVGDGAVGKTCLLISYTS   28 (197)
Q Consensus         8 ~i~v~G~~~~GKstli~~~~~   28 (197)
                      .|+++|++||||||+++.+.+
T Consensus       138 ~i~ivG~~GsGKTTll~~l~~  158 (372)
T 2ewv_A          138 LILVTGPTGSGKSTTIASMID  158 (372)
T ss_dssp             EEEEECSSSSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHh
Confidence            589999999999999988775

>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}

Probab=96.65  E-value=0.00091  Score=46.00  Aligned_cols=23  Identities=13%  Similarity=0.057  Sum_probs=20.0

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHhh
Q 036449            6 FIKCVTVGDGAVGKTCLLISYTS   28 (197)
Q Consensus         6 ~~~i~v~G~~~~GKstli~~~~~   28 (197)
                      ...|++.|.+||||||+.+.+..
T Consensus        12 ~~~I~l~G~~GsGKsT~a~~L~~   34 (199)
T 2bwj_A           12 CKIIFIIGGPGSGKGTQCEKLVE   34 (199)
T ss_dssp             SCEEEEEECTTSSHHHHHHHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHHH
Confidence            35799999999999999987764

>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*

Probab=96.65  E-value=0.0014  Score=48.70  Aligned_cols=24  Identities=21%  Similarity=0.058  Sum_probs=20.8

Q ss_pred             ceeEEEEEcCCCCCHHHHHHHHhh
Q 036449            5 RFIKCVTVGDGAVGKTCLLISYTS   28 (197)
Q Consensus         5 ~~~~i~v~G~~~~GKstli~~~~~   28 (197)
                      +...|.++|++|||||||++.+.+
T Consensus        79 ~g~iigI~G~~GsGKSTl~~~L~~  102 (308)
T 1sq5_A           79 IPYIISIAGSVAVGKSTTARVLQA  102 (308)
T ss_dssp             CCEEEEEEECTTSSHHHHHHHHHH
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHH
Confidence            446799999999999999988765

>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}

Probab=96.65  E-value=0.00095  Score=50.73  Aligned_cols=22  Identities=27%  Similarity=0.403  Sum_probs=20.2

Q ss_pred             EEEEEcCCCCCHHHHHHHHhhC
Q 036449            8 KCVTVGDGAVGKTCLLISYTSN   29 (197)
Q Consensus         8 ~i~v~G~~~~GKstli~~~~~~   29 (197)
                      .++++|++|+|||||++.+.+-
T Consensus       177 ~i~ivG~sGsGKSTll~~l~~~  198 (361)
T 2gza_A          177 VIVVAGETGSGKTTLMKALMQE  198 (361)
T ss_dssp             CEEEEESSSSCHHHHHHHHHTT
T ss_pred             EEEEECCCCCCHHHHHHHHHhc
Confidence            6899999999999999998874

>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}

Probab=96.64  E-value=0.0011  Score=50.24  Aligned_cols=22  Identities=23%  Similarity=0.277  Sum_probs=19.4

Q ss_pred             EEEEEcCCCCCHHHHHHHHhhC
Q 036449            8 KCVTVGDGAVGKTCLLISYTSN   29 (197)
Q Consensus         8 ~i~v~G~~~~GKstli~~~~~~   29 (197)
                      -++++|++|+|||||++.+.+-
T Consensus        31 ~~~llGpnGsGKSTLLr~iaGl   52 (359)
T 2yyz_A           31 FVALLGPSGCGKTTTLLMLAGI   52 (359)
T ss_dssp             EEEEECSTTSSHHHHHHHHHTS
T ss_pred             EEEEEcCCCchHHHHHHHHHCC
Confidence            3789999999999999988764

>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A

Probab=96.64  E-value=0.0011  Score=50.53  Aligned_cols=23  Identities=30%  Similarity=0.296  Sum_probs=19.9

Q ss_pred             EEEEEcCCCCCHHHHHHHHhhCC
Q 036449            8 KCVTVGDGAVGKTCLLISYTSNT   30 (197)
Q Consensus         8 ~i~v~G~~~~GKstli~~~~~~~   30 (197)
                      -++++|++|+|||||++.+.+-.
T Consensus        31 ~~~llGpsGsGKSTLLr~iaGl~   53 (381)
T 3rlf_A           31 FVVFVGPSGCGKSTLLRMIAGLE   53 (381)
T ss_dssp             EEEEECCTTSSHHHHHHHHHTSS
T ss_pred             EEEEEcCCCchHHHHHHHHHcCC
Confidence            37899999999999999887653

>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}

Probab=96.64  E-value=0.0012  Score=48.28  Aligned_cols=21  Identities=24%  Similarity=0.308  Sum_probs=19.2

Q ss_pred             EEEEcCCCCCHHHHHHHHhhC
Q 036449            9 CVTVGDGAVGKTCLLISYTSN   29 (197)
Q Consensus         9 i~v~G~~~~GKstli~~~~~~   29 (197)
                      ++++|++|+|||||++.+.+.
T Consensus        47 vlL~Gp~GtGKTtLakala~~   67 (274)
T 2x8a_A           47 VLLAGPPGCGKTLLAKAVANE   67 (274)
T ss_dssp             EEEESSTTSCHHHHHHHHHHH
T ss_pred             EEEECCCCCcHHHHHHHHHHH
Confidence            999999999999999988763

>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}

Probab=96.63  E-value=0.0014  Score=47.96  Aligned_cols=25  Identities=16%  Similarity=0.113  Sum_probs=21.4

Q ss_pred             CceeEEEEEcCCCCCHHHHHHHHhh
Q 036449            4 SRFIKCVTVGDGAVGKTCLLISYTS   28 (197)
Q Consensus         4 ~~~~~i~v~G~~~~GKstli~~~~~   28 (197)
                      ++.+.|+|.|.+||||||+.+.|..
T Consensus        73 ~~~~iI~I~G~~GSGKSTva~~La~   97 (281)
T 2f6r_A           73 SGLYVLGLTGISGSGKSSVAQRLKN   97 (281)
T ss_dssp             TTCEEEEEEECTTSCHHHHHHHHHH
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHH
Confidence            3467899999999999999988763

>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*

Probab=96.63  E-value=0.00041  Score=48.41  Aligned_cols=21  Identities=19%  Similarity=0.208  Sum_probs=18.6

Q ss_pred             EEEEEcCCCCCHHHHHHHHhh
Q 036449            8 KCVTVGDGAVGKTCLLISYTS   28 (197)
Q Consensus         8 ~i~v~G~~~~GKstli~~~~~   28 (197)
                      -|+|.|.+||||||+++.+..
T Consensus         2 ~I~i~G~~GsGKsTl~~~L~~   22 (214)
T 1gtv_A            2 LIAIEGVDGAGKRTLVEKLSG   22 (214)
T ss_dssp             EEEEEEEEEEEHHHHHHHHHH
T ss_pred             EEEEEcCCCCCHHHHHHHHHH
Confidence            489999999999999988764

>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A

Probab=96.63  E-value=0.0012  Score=47.55  Aligned_cols=21  Identities=24%  Similarity=0.256  Sum_probs=18.5

Q ss_pred             EEEEEcCCCCCHHHHHHHHhh
Q 036449            8 KCVTVGDGAVGKTCLLISYTS   28 (197)
Q Consensus         8 ~i~v~G~~~~GKstli~~~~~   28 (197)
                      -|+++|++|||||||...+..
T Consensus         3 li~I~G~~GSGKSTla~~La~   23 (253)
T 2ze6_A            3 LHLIYGPTCSGKTDMAIQIAQ   23 (253)
T ss_dssp             EEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHHh
Confidence            489999999999999988754

>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}

Probab=96.63  E-value=0.0012  Score=50.18  Aligned_cols=22  Identities=23%  Similarity=0.294  Sum_probs=19.4

Q ss_pred             EEEEEcCCCCCHHHHHHHHhhC
Q 036449            8 KCVTVGDGAVGKTCLLISYTSN   29 (197)
Q Consensus         8 ~i~v~G~~~~GKstli~~~~~~   29 (197)
                      -++++|++|+|||||++.+.+-
T Consensus        31 ~~~llGpnGsGKSTLLr~iaGl   52 (362)
T 2it1_A           31 FMALLGPSGSGKSTLLYTIAGI   52 (362)
T ss_dssp             EEEEECCTTSSHHHHHHHHHTS
T ss_pred             EEEEECCCCchHHHHHHHHhcC
Confidence            3789999999999999988764

>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A

Probab=96.63  E-value=0.001  Score=49.94  Aligned_cols=23  Identities=22%  Similarity=0.276  Sum_probs=20.5

Q ss_pred             EEEEEcCCCCCHHHHHHHHhhCC
Q 036449            8 KCVTVGDGAVGKTCLLISYTSNT   30 (197)
Q Consensus         8 ~i~v~G~~~~GKstli~~~~~~~   30 (197)
                      .++++|++|+|||||++.+.+-.
T Consensus       173 ~v~i~G~~GsGKTTll~~l~g~~  195 (330)
T 2pt7_A          173 NVIVCGGTGSGKTTYIKSIMEFI  195 (330)
T ss_dssp             CEEEEESTTSCHHHHHHHGGGGS
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            58999999999999999988753

>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*

Probab=96.62  E-value=0.0012  Score=47.36  Aligned_cols=21  Identities=33%  Similarity=0.404  Sum_probs=19.2

Q ss_pred             EEEEcCCCCCHHHHHHHHhhC
Q 036449            9 CVTVGDGAVGKTCLLISYTSN   29 (197)
Q Consensus         9 i~v~G~~~~GKstli~~~~~~   29 (197)
                      ++++|++|+|||||++.+.+.
T Consensus        52 ~ll~G~~G~GKTtl~~~i~~~   72 (254)
T 1ixz_A           52 VLLVGPPGVGKTHLARAVAGE   72 (254)
T ss_dssp             EEEECCTTSSHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHH
Confidence            899999999999999988764

>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*

Probab=96.61  E-value=0.0018  Score=48.57  Aligned_cols=24  Identities=21%  Similarity=0.200  Sum_probs=20.2

Q ss_pred             ceeEEEEEcCCCCCHHHHHHHHhh
Q 036449            5 RFIKCVTVGDGAVGKTCLLISYTS   28 (197)
Q Consensus         5 ~~~~i~v~G~~~~GKstli~~~~~   28 (197)
                      +.--|+++|++|+||||+++.+..
T Consensus       128 ~g~vi~lvG~nGaGKTTll~~Lag  151 (328)
T 3e70_C          128 KPYVIMFVGFNGSGKTTTIAKLAN  151 (328)
T ss_dssp             SSEEEEEECCTTSSHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHH
Confidence            446799999999999999977653

>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6

Probab=96.61  E-value=0.00072  Score=49.79  Aligned_cols=27  Identities=15%  Similarity=0.241  Sum_probs=18.0

Q ss_pred             CCCCceeEEEEEcCCCCCHHHHHHHHhh
Q 036449            1 MSASRFIKCVTVGDGAVGKTCLLISYTS   28 (197)
Q Consensus         1 m~~~~~~~i~v~G~~~~GKstli~~~~~   28 (197)
                      |+.. .+-|.+.|++||||||+.+.|..
T Consensus         1 Ms~~-~~iIgItG~sGSGKSTva~~L~~   27 (290)
T 1a7j_A            1 MSKK-HPIISVTGSSGAGTSTVKHTFDQ   27 (290)
T ss_dssp             -CTT-SCEEEEESCC---CCTHHHHHHH
T ss_pred             CCCC-ceEEEEECCCCCCHHHHHHHHHH
Confidence            6654 45699999999999999977653

>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*

Probab=96.59  E-value=0.0013  Score=50.16  Aligned_cols=22  Identities=27%  Similarity=0.212  Sum_probs=19.3

Q ss_pred             EEEEEcCCCCCHHHHHHHHhhC
Q 036449            8 KCVTVGDGAVGKTCLLISYTSN   29 (197)
Q Consensus         8 ~i~v~G~~~~GKstli~~~~~~   29 (197)
                      -++++|++|+|||||++.+.+-
T Consensus        39 ~~~llGpnGsGKSTLLr~iaGl   60 (372)
T 1v43_A           39 FLVLLGPSGCGKTTTLRMIAGL   60 (372)
T ss_dssp             EEEEECCTTSSHHHHHHHHHTS
T ss_pred             EEEEECCCCChHHHHHHHHHcC
Confidence            3789999999999999988764

>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A

Probab=96.59  E-value=0.0013  Score=50.23  Aligned_cols=21  Identities=24%  Similarity=0.279  Sum_probs=19.1

Q ss_pred             EEEEcCCCCCHHHHHHHHhhC
Q 036449            9 CVTVGDGAVGKTCLLISYTSN   29 (197)
Q Consensus         9 i~v~G~~~~GKstli~~~~~~   29 (197)
                      ++++|++|+|||||++.+.+-
T Consensus        32 ~~llGpnGsGKSTLLr~iaGl   52 (372)
T 1g29_1           32 MILLGPSGCGKTTTLRMIAGL   52 (372)
T ss_dssp             EEEECSTTSSHHHHHHHHHTS
T ss_pred             EEEECCCCcHHHHHHHHHHcC
Confidence            789999999999999988765

>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*

Probab=96.58  E-value=0.0014  Score=46.46  Aligned_cols=25  Identities=20%  Similarity=0.247  Sum_probs=21.4

Q ss_pred             ceeEEEEEcCCCCCHHHHHHHHhhC
Q 036449            5 RFIKCVTVGDGAVGKTCLLISYTSN   29 (197)
Q Consensus         5 ~~~~i~v~G~~~~GKstli~~~~~~   29 (197)
                      +..-|++.|+.||||||+++.+.+.
T Consensus        19 ~g~~i~i~G~~GsGKSTl~~~L~~~   43 (230)
T 2vp4_A           19 QPFTVLIEGNIGSGKTTYLNHFEKY   43 (230)
T ss_dssp             CCEEEEEECSTTSCHHHHHHTTGGG
T ss_pred             CceEEEEECCCCCCHHHHHHHHHhc
Confidence            3467999999999999999888764

>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}

Probab=96.58  E-value=0.0021  Score=47.63  Aligned_cols=22  Identities=27%  Similarity=0.181  Sum_probs=18.8

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhh
Q 036449            7 IKCVTVGDGAVGKTCLLISYTS   28 (197)
Q Consensus         7 ~~i~v~G~~~~GKstli~~~~~   28 (197)
                      --++++|+.||||||+++.+.+
T Consensus       101 ~vi~lvG~nGsGKTTll~~Lag  122 (302)
T 3b9q_A          101 AVIMIVGVNGGGKTTSLGKLAH  122 (302)
T ss_dssp             EEEEEECCTTSCHHHHHHHHHH
T ss_pred             cEEEEEcCCCCCHHHHHHHHHH
Confidence            4689999999999999977653

>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*

Probab=96.57  E-value=0.0014  Score=43.97  Aligned_cols=21  Identities=19%  Similarity=0.158  Sum_probs=18.8

Q ss_pred             EEEEEcCCCCCHHHHHHHHhh
Q 036449            8 KCVTVGDGAVGKTCLLISYTS   28 (197)
Q Consensus         8 ~i~v~G~~~~GKstli~~~~~   28 (197)
                      .|++.|.+||||||+.+.+..
T Consensus         4 ~I~l~G~~GsGKsT~a~~La~   24 (173)
T 1e6c_A            4 PIFMVGARGCGMTTVGRELAR   24 (173)
T ss_dssp             CEEEESCTTSSHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHH
Confidence            699999999999999987764

>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*

Probab=96.56  E-value=0.0016  Score=46.36  Aligned_cols=24  Identities=13%  Similarity=0.153  Sum_probs=20.4

Q ss_pred             ceeEEEEEcCCCCCHHHHHHHHhh
Q 036449            5 RFIKCVTVGDGAVGKTCLLISYTS   28 (197)
Q Consensus         5 ~~~~i~v~G~~~~GKstli~~~~~   28 (197)
                      +.+.|++.|++|+||||+.+.+..
T Consensus         8 ~~~~i~i~G~~GsGKsTla~~la~   31 (233)
T 3r20_A            8 GSLVVAVDGPAGTGKSSVSRGLAR   31 (233)
T ss_dssp             -CCEEEEECCTTSSHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHH
Confidence            457899999999999999987763

>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*

Probab=96.56  E-value=0.0019  Score=43.72  Aligned_cols=24  Identities=21%  Similarity=0.188  Sum_probs=20.3

Q ss_pred             ceeEEEEEcCCCCCHHHHHHHHhh
Q 036449            5 RFIKCVTVGDGAVGKTCLLISYTS   28 (197)
Q Consensus         5 ~~~~i~v~G~~~~GKstli~~~~~   28 (197)
                      +...|+++|.+||||||+.+.+..
T Consensus         4 ~g~~i~l~G~~GsGKST~~~~L~~   27 (179)
T 2pez_A            4 RGCTVWLTGLSGAGKTTVSMALEE   27 (179)
T ss_dssp             CCEEEEEECCTTSSHHHHHHHHHH
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHH
Confidence            345789999999999999987765

>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*

Probab=96.55  E-value=0.0013  Score=50.90  Aligned_cols=22  Identities=18%  Similarity=0.193  Sum_probs=19.6

Q ss_pred             EEEEEcCCCCCHHHHHHHHhhC
Q 036449            8 KCVTVGDGAVGKTCLLISYTSN   29 (197)
Q Consensus         8 ~i~v~G~~~~GKstli~~~~~~   29 (197)
                      -|+|+|+.||||||+++.+.+.
T Consensus       169 ii~I~GpnGSGKTTlL~allg~  190 (418)
T 1p9r_A          169 IILVTGPTGSGKSTTLYAGLQE  190 (418)
T ss_dssp             EEEEECSTTSCHHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHhh
Confidence            4899999999999999988763

>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*

Probab=96.53  E-value=0.0015  Score=44.38  Aligned_cols=21  Identities=19%  Similarity=0.093  Sum_probs=18.2

Q ss_pred             EEEEEcCCCCCHHHHHHHHhh
Q 036449            8 KCVTVGDGAVGKTCLLISYTS   28 (197)
Q Consensus         8 ~i~v~G~~~~GKstli~~~~~   28 (197)
                      -.+++|+.|+|||||+.++..
T Consensus        28 ~~~i~G~NGsGKStll~ai~~   48 (182)
T 3kta_A           28 FTAIVGANGSGKSNIGDAILF   48 (182)
T ss_dssp             EEEEEECTTSSHHHHHHHHHH
T ss_pred             cEEEECCCCCCHHHHHHHHHH
Confidence            468999999999999988754

>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}

Probab=96.52  E-value=0.0017  Score=45.70  Aligned_cols=20  Identities=15%  Similarity=0.137  Sum_probs=17.1

Q ss_pred             EEEEcCCCCCHHHHHHHHhh
Q 036449            9 CVTVGDGAVGKTCLLISYTS   28 (197)
Q Consensus         9 i~v~G~~~~GKstli~~~~~   28 (197)
                      |+++|+|||||+|....+..
T Consensus        32 I~llGpPGsGKgTqa~~L~~   51 (217)
T 3umf_A           32 IFVLGGPGSGKGTQCEKLVQ   51 (217)
T ss_dssp             EEEECCTTCCHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHH
Confidence            66789999999999977764

>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*

Probab=96.49  E-value=0.0016  Score=44.23  Aligned_cols=21  Identities=29%  Similarity=0.271  Sum_probs=18.7

Q ss_pred             EEEEEcCCCCCHHHHHHHHhh
Q 036449            8 KCVTVGDGAVGKTCLLISYTS   28 (197)
Q Consensus         8 ~i~v~G~~~~GKstli~~~~~   28 (197)
                      .|+++|.+||||||+.+.+..
T Consensus         4 ~I~l~G~~GsGKsT~a~~La~   24 (184)
T 2iyv_A            4 KAVLVGLPGSGKSTIGRRLAK   24 (184)
T ss_dssp             SEEEECSTTSSHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHH
Confidence            599999999999999987764

>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A

Probab=96.49  E-value=0.0025  Score=45.23  Aligned_cols=24  Identities=17%  Similarity=0.022  Sum_probs=20.7

Q ss_pred             ceeEEEEEcCCCCCHHHHHHHHhh
Q 036449            5 RFIKCVTVGDGAVGKTCLLISYTS   28 (197)
Q Consensus         5 ~~~~i~v~G~~~~GKstli~~~~~   28 (197)
                      +..-|++.|++||||||+++.+..
T Consensus        25 ~g~~i~i~G~~GsGKsT~~~~l~~   48 (229)
T 4eaq_A           25 MSAFITFEGPEGSGKTTVINEVYH   48 (229)
T ss_dssp             CCEEEEEECCTTSCHHHHHHHHHH
T ss_pred             CCeEEEEEcCCCCCHHHHHHHHHH
Confidence            446799999999999999988765

>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*

Probab=96.48  E-value=0.002  Score=43.15  Aligned_cols=22  Identities=23%  Similarity=0.150  Sum_probs=19.0

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhh
Q 036449            7 IKCVTVGDGAVGKTCLLISYTS   28 (197)
Q Consensus         7 ~~i~v~G~~~~GKstli~~~~~   28 (197)
                      -.|++.|.+||||||+.+.+..
T Consensus         8 ~~i~l~G~~GsGKSTva~~La~   29 (168)
T 1zuh_A            8 QHLVLIGFMGSGKSSLAQELGL   29 (168)
T ss_dssp             CEEEEESCTTSSHHHHHHHHHH
T ss_pred             ceEEEECCCCCCHHHHHHHHHH
Confidence            3689999999999999987754

>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}

Probab=96.47  E-value=0.0014  Score=44.37  Aligned_cols=23  Identities=26%  Similarity=0.330  Sum_probs=19.6

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHhh
Q 036449            6 FIKCVTVGDGAVGKTCLLISYTS   28 (197)
Q Consensus         6 ~~~i~v~G~~~~GKstli~~~~~   28 (197)
                      .-.+++.|++|+|||++++.+..
T Consensus        43 ~~~vll~G~~G~GKT~la~~~~~   65 (187)
T 2p65_A           43 KNNPILLGDPGVGKTAIVEGLAI   65 (187)
T ss_dssp             SCEEEEESCGGGCHHHHHHHHHH
T ss_pred             CCceEEECCCCCCHHHHHHHHHH
Confidence            34689999999999999987764

>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20

Probab=96.47  E-value=0.0018  Score=47.27  Aligned_cols=21  Identities=33%  Similarity=0.404  Sum_probs=19.3

Q ss_pred             EEEEcCCCCCHHHHHHHHhhC
Q 036449            9 CVTVGDGAVGKTCLLISYTSN   29 (197)
Q Consensus         9 i~v~G~~~~GKstli~~~~~~   29 (197)
                      ++++|++|+|||||++.+...
T Consensus        76 vll~Gp~GtGKTtl~~~i~~~   96 (278)
T 1iy2_A           76 VLLVGPPGVGKTHLARAVAGE   96 (278)
T ss_dssp             EEEECCTTSSHHHHHHHHHHH
T ss_pred             EEEECCCcChHHHHHHHHHHH
Confidence            899999999999999988764

>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12

Probab=96.46  E-value=0.0011  Score=50.10  Aligned_cols=22  Identities=27%  Similarity=0.249  Sum_probs=19.4

Q ss_pred             EEEEEcCCCCCHHHHHHHHhhC
Q 036449            8 KCVTVGDGAVGKTCLLISYTSN   29 (197)
Q Consensus         8 ~i~v~G~~~~GKstli~~~~~~   29 (197)
                      -++++|++|+|||||++.+.+-
T Consensus        28 ~~~llGpnGsGKSTLLr~iaGl   49 (348)
T 3d31_A           28 YFVILGPTGAGKTLFLELIAGF   49 (348)
T ss_dssp             EEEEECCCTHHHHHHHHHHHTS
T ss_pred             EEEEECCCCccHHHHHHHHHcC
Confidence            3789999999999999988764

>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}

Probab=96.46  E-value=0.0018  Score=45.54  Aligned_cols=21  Identities=19%  Similarity=0.349  Sum_probs=18.4

Q ss_pred             EEEEEcCCCCCHHHHHHHHhh
Q 036449            8 KCVTVGDGAVGKTCLLISYTS   28 (197)
Q Consensus         8 ~i~v~G~~~~GKstli~~~~~   28 (197)
                      -++++|++|+|||||+..+..
T Consensus        25 ~~~i~G~~GsGKTtl~~~l~~   45 (235)
T 2w0m_A           25 FIALTGEPGTGKTIFSLHFIA   45 (235)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEEcCCCCCHHHHHHHHHH
Confidence            478999999999999988774

>4ido_A Atlastin-1; GTPase, GTP/GDP binding, hydrolase; HET: GDP; 2.09A {Homo sapiens} PDB: 4idn_A* 3q5d_A* 3q5e_A* 4idq_A* 4idp_A* 3qnu_A* 3qof_A*

Probab=96.44  E-value=0.0067  Score=47.27  Aligned_cols=24  Identities=17%  Similarity=0.146  Sum_probs=20.3

Q ss_pred             CceeEEEEEcCCCCCHHHHHHHHh
Q 036449            4 SRFIKCVTVGDGAVGKTCLLISYT   27 (197)
Q Consensus         4 ~~~~~i~v~G~~~~GKstli~~~~   27 (197)
                      .+..-|.|+|+.++|||+|+|.++
T Consensus        65 ~~v~vvsv~G~~~~gks~l~N~ll   88 (457)
T 4ido_A           65 KEVVAVSVAGAFRKGKSFLMDFML   88 (457)
T ss_dssp             SBEEEEEEEEBTTSSHHHHHHHHH
T ss_pred             CceEEEEEECCCCCchhHHHHHHH
Confidence            456778899999999999999654

>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1

Probab=96.44  E-value=0.0016  Score=51.77  Aligned_cols=23  Identities=30%  Similarity=0.336  Sum_probs=20.5

Q ss_pred             EEEEEcCCCCCHHHHHHHHhhCC
Q 036449            8 KCVTVGDGAVGKTCLLISYTSNT   30 (197)
Q Consensus         8 ~i~v~G~~~~GKstli~~~~~~~   30 (197)
                      .++++|+.||||||+++.+.+--
T Consensus       262 ~i~I~GptGSGKTTlL~aL~~~i  284 (511)
T 2oap_1          262 SAIVVGETASGKTTTLNAIMMFI  284 (511)
T ss_dssp             CEEEEESTTSSHHHHHHHHGGGS
T ss_pred             EEEEECCCCCCHHHHHHHHHhhC
Confidence            59999999999999999988643

>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}

Probab=96.43  E-value=0.0017  Score=49.86  Aligned_cols=22  Identities=23%  Similarity=0.354  Sum_probs=19.2

Q ss_pred             EEEEEcCCCCCHHHHHHHHhhC
Q 036449            8 KCVTVGDGAVGKTCLLISYTSN   29 (197)
Q Consensus         8 ~i~v~G~~~~GKstli~~~~~~   29 (197)
                      .++++|++|+|||||++.+.+-
T Consensus        49 ~~~llGpsGsGKSTLLr~iaGl   70 (390)
T 3gd7_A           49 RVGLLGRTGSGKSTLLSAFLRL   70 (390)
T ss_dssp             EEEEEESTTSSHHHHHHHHHTC
T ss_pred             EEEEECCCCChHHHHHHHHhCC
Confidence            4789999999999999888753

>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*

Probab=96.41  E-value=0.0019  Score=48.50  Aligned_cols=23  Identities=26%  Similarity=0.257  Sum_probs=19.7

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhhC
Q 036449            7 IKCVTVGDGAVGKTCLLISYTSN   29 (197)
Q Consensus         7 ~~i~v~G~~~~GKstli~~~~~~   29 (197)
                      -.+++.|++|+|||||++.+.+.
T Consensus        52 ~~~ll~Gp~G~GKTTLa~~ia~~   74 (334)
T 1in4_A           52 DHVLLAGPPGLGKTTLAHIIASE   74 (334)
T ss_dssp             CCEEEESSTTSSHHHHHHHHHHH
T ss_pred             CeEEEECCCCCcHHHHHHHHHHH
Confidence            35899999999999999888753

>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}

Probab=96.40  E-value=0.003  Score=47.91  Aligned_cols=22  Identities=27%  Similarity=0.181  Sum_probs=18.8

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhh
Q 036449            7 IKCVTVGDGAVGKTCLLISYTS   28 (197)
Q Consensus         7 ~~i~v~G~~~~GKstli~~~~~   28 (197)
                      -.|+++|+.||||||+++.+.+
T Consensus       158 ~vi~lvG~nGsGKTTll~~Lag  179 (359)
T 2og2_A          158 AVIMIVGVNGGGKTTSLGKLAH  179 (359)
T ss_dssp             EEEEEECCTTSCHHHHHHHHHH
T ss_pred             eEEEEEcCCCChHHHHHHHHHh
Confidence            4689999999999999977653

>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A

Probab=96.39  E-value=0.0023  Score=45.16  Aligned_cols=23  Identities=17%  Similarity=0.111  Sum_probs=20.0

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHhh
Q 036449            6 FIKCVTVGDGAVGKTCLLISYTS   28 (197)
Q Consensus         6 ~~~i~v~G~~~~GKstli~~~~~   28 (197)
                      .-.+++.|++|+|||+|++.+..
T Consensus        52 ~~~~ll~G~~G~GKT~la~~l~~   74 (242)
T 3bos_A           52 VQAIYLWGPVKSGRTHLIHAACA   74 (242)
T ss_dssp             CSEEEEECSTTSSHHHHHHHHHH
T ss_pred             CCeEEEECCCCCCHHHHHHHHHH
Confidence            45799999999999999987764

>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A

Probab=96.38  E-value=0.0028  Score=47.28  Aligned_cols=27  Identities=30%  Similarity=0.308  Sum_probs=20.7

Q ss_pred             CCCCceeEEEEEcCCCCCHHHHHHHHhh
Q 036449            1 MSASRFIKCVTVGDGAVGKTCLLISYTS   28 (197)
Q Consensus         1 m~~~~~~~i~v~G~~~~GKstli~~~~~   28 (197)
                      |+..+ ..|+++|++|||||||...+..
T Consensus         1 ~~~m~-~~i~i~GptGsGKTtla~~La~   27 (323)
T 3crm_A            1 MSSLP-PAIFLMGPTAAGKTDLAMALAD   27 (323)
T ss_dssp             --CCC-EEEEEECCTTSCHHHHHHHHHH
T ss_pred             CCCCC-cEEEEECCCCCCHHHHHHHHHH
Confidence            55533 4699999999999999988765

>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*

Probab=96.38  E-value=0.0029  Score=44.11  Aligned_cols=24  Identities=25%  Similarity=0.257  Sum_probs=20.0

Q ss_pred             ceeEEEEEcCCCCCHHHHHHHHhh
Q 036449            5 RFIKCVTVGDGAVGKTCLLISYTS   28 (197)
Q Consensus         5 ~~~~i~v~G~~~~GKstli~~~~~   28 (197)
                      +...|+++|.+|+||||+.+.+..
T Consensus        24 ~~~~i~~~G~~GsGKsT~~~~l~~   47 (211)
T 1m7g_A           24 RGLTIWLTGLSASGKSTLAVELEH   47 (211)
T ss_dssp             SCEEEEEECSTTSSHHHHHHHHHH
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHH
Confidence            345799999999999999987654

>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}

Probab=96.36  E-value=0.0018  Score=50.87  Aligned_cols=23  Identities=35%  Similarity=0.391  Sum_probs=20.0

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhhC
Q 036449            7 IKCVTVGDGAVGKTCLLISYTSN   29 (197)
Q Consensus         7 ~~i~v~G~~~~GKstli~~~~~~   29 (197)
                      -.++++|+.|+|||||++.+.+-
T Consensus       139 e~v~IvGpnGsGKSTLlr~L~Gl  161 (460)
T 2npi_A          139 PRVVIVGGSQTGKTSLSRTLCSY  161 (460)
T ss_dssp             CCEEEEESTTSSHHHHHHHHHHT
T ss_pred             CEEEEECCCCCCHHHHHHHHhCc
Confidence            36899999999999999887754

>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}

Probab=96.36  E-value=0.0025  Score=43.97  Aligned_cols=23  Identities=30%  Similarity=0.270  Sum_probs=20.0

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhhC
Q 036449            7 IKCVTVGDGAVGKTCLLISYTSN   29 (197)
Q Consensus         7 ~~i~v~G~~~~GKstli~~~~~~   29 (197)
                      -.+++.|++|+|||+|+..+...
T Consensus        55 ~~~~l~G~~GtGKT~la~~i~~~   77 (202)
T 2w58_A           55 KGLYLHGSFGVGKTYLLAAIANE   77 (202)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CeEEEECCCCCCHHHHHHHHHHH
Confidence            57999999999999999877653

>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}

Probab=96.35  E-value=0.0021  Score=46.21  Aligned_cols=22  Identities=23%  Similarity=0.046  Sum_probs=19.2

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhh
Q 036449            7 IKCVTVGDGAVGKTCLLISYTS   28 (197)
Q Consensus         7 ~~i~v~G~~~~GKstli~~~~~   28 (197)
                      -.|+++|++|+||||+.+.+..
T Consensus        49 ~~i~l~G~~GsGKSTl~~~La~   70 (250)
T 3nwj_A           49 RSMYLVGMMGSGKTTVGKIMAR   70 (250)
T ss_dssp             CCEEEECSTTSCHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHH
Confidence            3699999999999999987754

>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20

Probab=96.35  E-value=0.0023  Score=46.05  Aligned_cols=22  Identities=27%  Similarity=0.291  Sum_probs=19.6

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhh
Q 036449            7 IKCVTVGDGAVGKTCLLISYTS   28 (197)
Q Consensus         7 ~~i~v~G~~~~GKstli~~~~~   28 (197)
                      -.|++.|++|+|||+|++.+..
T Consensus        46 ~~vll~G~~GtGKT~la~~la~   67 (257)
T 1lv7_A           46 KGVLMVGPPGTGKTLLAKAIAG   67 (257)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHH
T ss_pred             CeEEEECcCCCCHHHHHHHHHH
Confidence            3599999999999999988865

>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A

Probab=96.34  E-value=0.0031  Score=49.71  Aligned_cols=21  Identities=29%  Similarity=0.324  Sum_probs=18.5

Q ss_pred             eEEEEEcCCCCCHHHHHHHHh
Q 036449            7 IKCVTVGDGAVGKTCLLISYT   27 (197)
Q Consensus         7 ~~i~v~G~~~~GKstli~~~~   27 (197)
                      --|+++|+.|+|||||++.+.
T Consensus       294 eVI~LVGpNGSGKTTLl~~LA  314 (503)
T 2yhs_A          294 FVILMVGVNGVGKTTTIGKLA  314 (503)
T ss_dssp             EEEEEECCTTSSHHHHHHHHH
T ss_pred             eEEEEECCCcccHHHHHHHHH
Confidence            468999999999999997765

>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*

Probab=96.31  E-value=0.0011  Score=50.22  Aligned_cols=22  Identities=18%  Similarity=0.250  Sum_probs=19.4

Q ss_pred             EEEEEcCCCCCHHHHHHHHhhC
Q 036449            8 KCVTVGDGAVGKTCLLISYTSN   29 (197)
Q Consensus         8 ~i~v~G~~~~GKstli~~~~~~   29 (197)
                      -++++|++|+|||||++.+.+-
T Consensus        33 ~~~llGpnGsGKSTLLr~iaGl   54 (353)
T 1oxx_K           33 RFGILGPSGAGKTTFMRIIAGL   54 (353)
T ss_dssp             EEEEECSCHHHHHHHHHHHHTS
T ss_pred             EEEEECCCCCcHHHHHHHHhCC
Confidence            3789999999999999988765

>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A

Probab=96.28  E-value=0.0033  Score=46.25  Aligned_cols=22  Identities=18%  Similarity=0.240  Sum_probs=19.6

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhh
Q 036449            7 IKCVTVGDGAVGKTCLLISYTS   28 (197)
Q Consensus         7 ~~i~v~G~~~~GKstli~~~~~   28 (197)
                      ..|+++|.+||||||+.+.+..
T Consensus         3 ~~I~l~G~~GsGKST~a~~L~~   24 (301)
T 1ltq_A            3 KIILTIGCPGSGKSTWAREFIA   24 (301)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHH
Confidence            4689999999999999988875

>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}

Probab=96.27  E-value=0.003  Score=47.40  Aligned_cols=22  Identities=41%  Similarity=0.383  Sum_probs=19.5

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhh
Q 036449            7 IKCVTVGDGAVGKTCLLISYTS   28 (197)
Q Consensus         7 ~~i~v~G~~~~GKstli~~~~~   28 (197)
                      .-|+|+|++|||||||...+..
T Consensus         8 ~lI~I~GptgSGKTtla~~La~   29 (340)
T 3d3q_A            8 FLIVIVGPTASGKTELSIEVAK   29 (340)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHH
T ss_pred             ceEEEECCCcCcHHHHHHHHHH
Confidence            4699999999999999988765

>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1

Probab=96.27  E-value=0.0024  Score=47.60  Aligned_cols=25  Identities=24%  Similarity=0.186  Sum_probs=21.4

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHhhCC
Q 036449            6 FIKCVTVGDGAVGKTCLLISYTSNT   30 (197)
Q Consensus         6 ~~~i~v~G~~~~GKstli~~~~~~~   30 (197)
                      .--++++|..|+|||||++.+.+..
T Consensus         4 i~v~~i~G~~GaGKTTll~~l~~~~   28 (318)
T 1nij_A            4 IAVTLLTGFLGAGKTTLLRHILNEQ   28 (318)
T ss_dssp             EEEEEEEESSSSSCHHHHHHHHHSC
T ss_pred             ccEEEEEecCCCCHHHHHHHHHhhc
Confidence            4467899999999999999998653

>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}

Probab=96.26  E-value=0.0034  Score=43.28  Aligned_cols=24  Identities=13%  Similarity=0.111  Sum_probs=20.9

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHhhC
Q 036449            6 FIKCVTVGDGAVGKTCLLISYTSN   29 (197)
Q Consensus         6 ~~~i~v~G~~~~GKstli~~~~~~   29 (197)
                      .+.|.+.|..||||||+.+.|...
T Consensus        12 ~~iIgltG~~GSGKSTva~~L~~~   35 (192)
T 2grj_A           12 HMVIGVTGKIGTGKSTVCEILKNK   35 (192)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHH
T ss_pred             ceEEEEECCCCCCHHHHHHHHHHh
Confidence            478999999999999999887653

>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*

Probab=96.24  E-value=0.0024  Score=46.93  Aligned_cols=22  Identities=9%  Similarity=0.179  Sum_probs=18.7

Q ss_pred             EEEEEcCCCCCHHHHHHHHhhC
Q 036449            8 KCVTVGDGAVGKTCLLISYTSN   29 (197)
Q Consensus         8 ~i~v~G~~~~GKstli~~~~~~   29 (197)
                      -++++|++|+|||||+..+...
T Consensus        37 ~~~i~G~~G~GKTTl~~~ia~~   58 (296)
T 1cr0_A           37 VIMVTSGSGMGKSTFVRQQALQ   58 (296)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHH
T ss_pred             EEEEEeCCCCCHHHHHHHHHHH
Confidence            3789999999999999877643

>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*

Probab=96.24  E-value=0.0029  Score=44.15  Aligned_cols=21  Identities=29%  Similarity=0.170  Sum_probs=19.2

Q ss_pred             EEEEEcCCCCCHHHHHHHHhh
Q 036449            8 KCVTVGDGAVGKTCLLISYTS   28 (197)
Q Consensus         8 ~i~v~G~~~~GKstli~~~~~   28 (197)
                      -++++|++|+|||||+..+..
T Consensus        22 ~~~i~G~~GsGKTtl~~~l~~   42 (220)
T 2cvh_A           22 LTQVYGPYASGKTTLALQTGL   42 (220)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            489999999999999998876

>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11

Probab=96.22  E-value=0.003  Score=44.80  Aligned_cols=22  Identities=18%  Similarity=0.140  Sum_probs=19.7

Q ss_pred             EEEEEcCCCCCHHHHHHHHhhC
Q 036449            8 KCVTVGDGAVGKTCLLISYTSN   29 (197)
Q Consensus         8 ~i~v~G~~~~GKstli~~~~~~   29 (197)
                      -++++|++|+|||||+..+...
T Consensus        26 ~~~i~G~~GsGKTtl~~~l~~~   47 (243)
T 1n0w_A           26 ITEMFGEFRTGKTQICHTLAVT   47 (243)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCcHHHHHHHHHHH
Confidence            4789999999999999988874

>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}

Probab=96.22  E-value=0.004  Score=43.98  Aligned_cols=28  Identities=14%  Similarity=-0.025  Sum_probs=21.2

Q ss_pred             CCCCceeEEEEEcCCCCCHHHHHHHHhh
Q 036449            1 MSASRFIKCVTVGDGAVGKTCLLISYTS   28 (197)
Q Consensus         1 m~~~~~~~i~v~G~~~~GKstli~~~~~   28 (197)
                      |...+..-|++.|.+|+||||+++.+..
T Consensus        16 ~~~~~~~~i~~~G~~g~GKst~~~~l~~   43 (223)
T 3ld9_A           16 TQGPGSMFITFEGIDGSGKTTQSHLLAE   43 (223)
T ss_dssp             ---CCCEEEEEECSTTSSHHHHHHHHHH
T ss_pred             ccCCCCeEEEEECCCCCCHHHHHHHHHH
Confidence            3445667899999999999999977653

>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*

Probab=96.18  E-value=0.0036  Score=41.25  Aligned_cols=19  Identities=26%  Similarity=0.433  Sum_probs=16.8

Q ss_pred             EEEEcCCCCCHHHHHHHHh
Q 036449            9 CVTVGDGAVGKTCLLISYT   27 (197)
Q Consensus         9 i~v~G~~~~GKstli~~~~   27 (197)
                      .+++|+.|+|||||+.++.
T Consensus        26 ~~I~G~NGsGKStil~Ai~   44 (149)
T 1f2t_A           26 NLIIGQNGSGKSSLLDAIL   44 (149)
T ss_dssp             EEEECCTTSSHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHH
Confidence            4799999999999998764

>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*

Probab=96.14  E-value=0.0033  Score=47.49  Aligned_cols=23  Identities=22%  Similarity=0.238  Sum_probs=20.7

Q ss_pred             EEEEEcCCCCCHHHHHHHHhhCC
Q 036449            8 KCVTVGDGAVGKTCLLISYTSNT   30 (197)
Q Consensus         8 ~i~v~G~~~~GKstli~~~~~~~   30 (197)
                      ++.++|+.|+|||||++.+.+..
T Consensus        73 ~~gIiG~nGaGKTTLl~~I~g~~   95 (347)
T 2obl_A           73 RIGIFAGSGVGKSTLLGMICNGA   95 (347)
T ss_dssp             EEEEEECTTSSHHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHhcCC
Confidence            68999999999999999888764

>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*

Probab=96.14  E-value=0.0035  Score=43.35  Aligned_cols=24  Identities=21%  Similarity=0.372  Sum_probs=20.9

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhhCC
Q 036449            7 IKCVTVGDGAVGKTCLLISYTSNT   30 (197)
Q Consensus         7 ~~i~v~G~~~~GKstli~~~~~~~   30 (197)
                      ..|+++|++|+|||+|...+....
T Consensus        35 ~~ilI~GpsGsGKStLA~~La~~g   58 (205)
T 2qmh_A           35 LGVLITGDSGVGKSETALELVQRG   58 (205)
T ss_dssp             EEEEEECCCTTTTHHHHHHHHTTT
T ss_pred             EEEEEECCCCCCHHHHHHHHHHhC
Confidence            458999999999999999988653

>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*

Probab=96.14  E-value=0.0041  Score=45.85  Aligned_cols=23  Identities=17%  Similarity=0.286  Sum_probs=19.3

Q ss_pred             ceeEEEEEcCCCCCHHHHHHHHh
Q 036449            5 RFIKCVTVGDGAVGKTCLLISYT   27 (197)
Q Consensus         5 ~~~~i~v~G~~~~GKstli~~~~   27 (197)
                      ....+++.|++|+|||++.+.+.
T Consensus        66 ~~~~vll~G~~GtGKT~la~~la   88 (309)
T 3syl_A           66 PTLHMSFTGNPGTGKTTVALKMA   88 (309)
T ss_dssp             CCCEEEEEECTTSSHHHHHHHHH
T ss_pred             CCceEEEECCCCCCHHHHHHHHH
Confidence            34579999999999999997554

>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*

Probab=96.14  E-value=0.0034  Score=44.15  Aligned_cols=21  Identities=24%  Similarity=0.278  Sum_probs=18.5

Q ss_pred             EEEEEcCCCCCHHHHHHHHhh
Q 036449            8 KCVTVGDGAVGKTCLLISYTS   28 (197)
Q Consensus         8 ~i~v~G~~~~GKstli~~~~~   28 (197)
                      .+++.|++|+|||++++.+..
T Consensus        47 ~~ll~G~~G~GKT~l~~~~~~   67 (250)
T 1njg_A           47 AYLFSGTRGVGKTSIARLLAK   67 (250)
T ss_dssp             EEEEECSTTSCHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            589999999999999987764

>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*

Probab=96.13  E-value=0.0047  Score=42.67  Aligned_cols=21  Identities=19%  Similarity=0.194  Sum_probs=18.7

Q ss_pred             EEEEEcCCCCCHHHHHHHHhh
Q 036449            8 KCVTVGDGAVGKTCLLISYTS   28 (197)
Q Consensus         8 ~i~v~G~~~~GKstli~~~~~   28 (197)
                      .|.+.|.+||||||+.+.+..
T Consensus         4 ~i~i~G~~GsGKst~~~~la~   24 (208)
T 3ake_A            4 IVTIDGPSASGKSSVARRVAA   24 (208)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            699999999999999987754

>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A

Probab=96.10  E-value=0.0034  Score=47.90  Aligned_cols=22  Identities=23%  Similarity=0.098  Sum_probs=19.6

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhh
Q 036449            7 IKCVTVGDGAVGKTCLLISYTS   28 (197)
Q Consensus         7 ~~i~v~G~~~~GKstli~~~~~   28 (197)
                      -.|+++|++|+|||||++.+.+
T Consensus       170 ~~i~l~G~~GsGKSTl~~~l~~  191 (377)
T 1svm_A          170 RYWLFKGPIDSGKTTLAAALLE  191 (377)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHh
Confidence            4689999999999999988875

>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*

Probab=96.08  E-value=0.005  Score=47.70  Aligned_cols=25  Identities=20%  Similarity=0.147  Sum_probs=21.0

Q ss_pred             ceeEEEEEcCCCCCHHHHHHHHhhC
Q 036449            5 RFIKCVTVGDGAVGKTCLLISYTSN   29 (197)
Q Consensus         5 ~~~~i~v~G~~~~GKstli~~~~~~   29 (197)
                      ...-|+++|.+||||||+.+++...
T Consensus       257 ~~~lIil~G~pGSGKSTla~~L~~~  281 (416)
T 3zvl_A          257 NPEVVVAVGFPGAGKSTFIQEHLVS  281 (416)
T ss_dssp             SCCEEEEESCTTSSHHHHHHHHTGG
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHHh
Confidence            3456899999999999999998753

>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*

Probab=96.07  E-value=0.0036  Score=49.28  Aligned_cols=21  Identities=14%  Similarity=0.346  Sum_probs=18.4

Q ss_pred             EEEEEcCCCCCHHHHHHHHhh
Q 036449            8 KCVTVGDGAVGKTCLLISYTS   28 (197)
Q Consensus         8 ~i~v~G~~~~GKstli~~~~~   28 (197)
                      .++++|+.|+|||||++.+.+
T Consensus        31 ~~~liG~nGsGKSTLl~~l~G   51 (483)
T 3euj_A           31 VTTLSGGNGAGKSTTMAGFVT   51 (483)
T ss_dssp             EEEEECCTTSSHHHHHHHHHH
T ss_pred             eEEEECCCCCcHHHHHHHHhc
Confidence            478999999999999987764

>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1

Probab=96.06  E-value=0.0048  Score=43.78  Aligned_cols=25  Identities=16%  Similarity=0.190  Sum_probs=21.1

Q ss_pred             CceeEEEEEcCCCCCHHHHHHHHhh
Q 036449            4 SRFIKCVTVGDGAVGKTCLLISYTS   28 (197)
Q Consensus         4 ~~~~~i~v~G~~~~GKstli~~~~~   28 (197)
                      .+...|.++|.+|+||||+.+.+..
T Consensus        14 ~~~~~i~i~G~~gsGKst~~~~l~~   38 (236)
T 1q3t_A           14 MKTIQIAIDGPASSGKSTVAKIIAK   38 (236)
T ss_dssp             CCCCEEEEECSSCSSHHHHHHHHHH
T ss_pred             cCCcEEEEECCCCCCHHHHHHHHHH
Confidence            3456899999999999999987764

>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}

Probab=96.05  E-value=0.004  Score=49.86  Aligned_cols=22  Identities=18%  Similarity=0.211  Sum_probs=19.8

Q ss_pred             EEEEEcCCCCCHHHHHHHHhhC
Q 036449            8 KCVTVGDGAVGKTCLLISYTSN   29 (197)
Q Consensus         8 ~i~v~G~~~~GKstli~~~~~~   29 (197)
                      .++++|+.|+|||||++.+.+.
T Consensus        49 ~~~LvG~NGaGKSTLlk~l~Gl   70 (538)
T 1yqt_A           49 VVGIVGPNGTGKSTAVKILAGQ   70 (538)
T ss_dssp             EEEEECCTTSSHHHHHHHHHTS
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            5899999999999999988864

>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}

Probab=96.00  E-value=0.0045  Score=45.11  Aligned_cols=24  Identities=21%  Similarity=0.149  Sum_probs=20.7

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHhhC
Q 036449            6 FIKCVTVGDGAVGKTCLLISYTSN   29 (197)
Q Consensus         6 ~~~i~v~G~~~~GKstli~~~~~~   29 (197)
                      .-.+++.|++|+|||+|++.+...
T Consensus        51 ~~~~ll~G~~GtGKT~la~~la~~   74 (285)
T 3h4m_A           51 PKGILLYGPPGTGKTLLAKAVATE   74 (285)
T ss_dssp             CSEEEEESSSSSSHHHHHHHHHHH
T ss_pred             CCeEEEECCCCCcHHHHHHHHHHH
Confidence            356999999999999999988754

>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A

Probab=96.00  E-value=0.0038  Score=50.53  Aligned_cols=22  Identities=23%  Similarity=0.237  Sum_probs=19.8

Q ss_pred             EEEEEcCCCCCHHHHHHHHhhC
Q 036449            8 KCVTVGDGAVGKTCLLISYTSN   29 (197)
Q Consensus         8 ~i~v~G~~~~GKstli~~~~~~   29 (197)
                      .++++|++|+|||||++.+.+-
T Consensus       371 ~~~ivG~sGsGKSTLl~~l~g~  392 (582)
T 3b60_A          371 TVALVGRSGSGKSTIASLITRF  392 (582)
T ss_dssp             EEEEEECTTSSHHHHHHHHTTT
T ss_pred             EEEEECCCCCCHHHHHHHHhhc
Confidence            5899999999999999988764

>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}

Probab=96.00  E-value=0.0052  Score=41.47  Aligned_cols=23  Identities=17%  Similarity=0.377  Sum_probs=20.4

Q ss_pred             EEEEEcCCCCCHHHHHHHHhhCC
Q 036449            8 KCVTVGDGAVGKTCLLISYTSNT   30 (197)
Q Consensus         8 ~i~v~G~~~~GKstli~~~~~~~   30 (197)
                      -|++.|++|+||||+...+....
T Consensus        18 gvli~G~SGaGKStlal~L~~rG   40 (181)
T 3tqf_A           18 GVLITGEANIGKSELSLALIDRG   40 (181)
T ss_dssp             EEEEEESSSSSHHHHHHHHHHTT
T ss_pred             EEEEEcCCCCCHHHHHHHHHHcC
Confidence            48999999999999999988753

>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}

Probab=96.00  E-value=0.0041  Score=45.65  Aligned_cols=24  Identities=21%  Similarity=0.146  Sum_probs=20.8

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHhhC
Q 036449            6 FIKCVTVGDGAVGKTCLLISYTSN   29 (197)
Q Consensus         6 ~~~i~v~G~~~~GKstli~~~~~~   29 (197)
                      .-.+++.|++|+|||++++.+...
T Consensus        54 ~~~vll~Gp~GtGKT~la~~la~~   77 (297)
T 3b9p_A           54 AKGLLLFGPPGNGKTLLARAVATE   77 (297)
T ss_dssp             CSEEEEESSSSSCHHHHHHHHHHH
T ss_pred             CCeEEEECcCCCCHHHHHHHHHHH
Confidence            357999999999999999988763

>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}

Probab=95.99  E-value=0.0045  Score=44.44  Aligned_cols=22  Identities=23%  Similarity=0.274  Sum_probs=19.5

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhh
Q 036449            7 IKCVTVGDGAVGKTCLLISYTS   28 (197)
Q Consensus         7 ~~i~v~G~~~~GKstli~~~~~   28 (197)
                      -.|++.|++|+|||++++.+..
T Consensus        40 ~~vll~G~~GtGKT~la~~la~   61 (262)
T 2qz4_A           40 KGALLLGPPGCGKTLLAKAVAT   61 (262)
T ss_dssp             CEEEEESCTTSSHHHHHHHHHH
T ss_pred             ceEEEECCCCCCHHHHHHHHHH
Confidence            4589999999999999988865

>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}

Probab=95.97  E-value=0.0043  Score=48.36  Aligned_cols=23  Identities=26%  Similarity=0.247  Sum_probs=20.4

Q ss_pred             EEEEEcCCCCCHHHHHHHHhhCC
Q 036449            8 KCVTVGDGAVGKTCLLISYTSNT   30 (197)
Q Consensus         8 ~i~v~G~~~~GKstli~~~~~~~   30 (197)
                      +++++|++|+|||||++.+.+..
T Consensus       159 ~~~IvG~sGsGKSTLl~~Iag~~  181 (438)
T 2dpy_A          159 RMGLFAGSGVGKSVLLGMMARYT  181 (438)
T ss_dssp             EEEEEECTTSSHHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHhccc
Confidence            68999999999999998888753

>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}

Probab=95.94  E-value=0.0044  Score=50.14  Aligned_cols=22  Identities=23%  Similarity=0.309  Sum_probs=19.7

Q ss_pred             EEEEEcCCCCCHHHHHHHHhhC
Q 036449            8 KCVTVGDGAVGKTCLLISYTSN   29 (197)
Q Consensus         8 ~i~v~G~~~~GKstli~~~~~~   29 (197)
                      .++++|++|+|||||++.+.+-
T Consensus       371 ~~~ivG~sGsGKSTll~~l~g~  392 (582)
T 3b5x_A          371 TVALVGRSGSGKSTIANLFTRF  392 (582)
T ss_pred             EEEEECCCCCCHHHHHHHHhcC
Confidence            5899999999999999888764

>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*

Probab=95.92  E-value=0.0078  Score=43.60  Aligned_cols=26  Identities=19%  Similarity=0.294  Sum_probs=21.9

Q ss_pred             CceeEEEEEcCCCCCHHHHHHHHhhC
Q 036449            4 SRFIKCVTVGDGAVGKTCLLISYTSN   29 (197)
Q Consensus         4 ~~~~~i~v~G~~~~GKstli~~~~~~   29 (197)
                      ...-.+++.|++|+|||++.+.+...
T Consensus        62 ~~~~~vLl~G~~GtGKT~la~~ia~~   87 (272)
T 1d2n_A           62 TPLVSVLLEGPPHSGKTALAAKIAEE   87 (272)
T ss_dssp             CSEEEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCcHHHHHHHHHHH
Confidence            34567999999999999999888763

>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20

Probab=95.92  E-value=0.0039  Score=43.32  Aligned_cols=21  Identities=24%  Similarity=0.325  Sum_probs=18.4

Q ss_pred             EEEEEcCCCCCHHHHHHHHhh
Q 036449            8 KCVTVGDGAVGKTCLLISYTS   28 (197)
Q Consensus         8 ~i~v~G~~~~GKstli~~~~~   28 (197)
                      .+++.|++|+|||+++.++..
T Consensus        60 ~ili~GPPGtGKTt~a~ala~   80 (212)
T 1tue_A           60 CLVFCGPANTGKSYFGMSFIH   80 (212)
T ss_dssp             EEEEESCGGGCHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            599999999999999877754

>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*

Probab=95.92  E-value=0.0074  Score=45.58  Aligned_cols=23  Identities=17%  Similarity=0.218  Sum_probs=19.2

Q ss_pred             ceeEEEEEcCCCCCHHHHHHHHh
Q 036449            5 RFIKCVTVGDGAVGKTCLLISYT   27 (197)
Q Consensus         5 ~~~~i~v~G~~~~GKstli~~~~   27 (197)
                      ...+|+++|++|+||||+.+.+.
T Consensus        23 ~~~~i~l~G~~G~GKTTl~~~la   45 (359)
T 2ga8_A           23 YRVCVILVGSPGSGKSTIAEELC   45 (359)
T ss_dssp             SCEEEEEECCTTSSHHHHHHHHH
T ss_pred             CeeEEEEECCCCCcHHHHHHHHH
Confidence            45689999999999999996543

>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A

Probab=95.90  E-value=0.0054  Score=45.13  Aligned_cols=24  Identities=13%  Similarity=-0.089  Sum_probs=19.5

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHhhC
Q 036449            6 FIKCVTVGDGAVGKTCLLISYTSN   29 (197)
Q Consensus         6 ~~~i~v~G~~~~GKstli~~~~~~   29 (197)
                      ..-+++.|++|+|||+|.+.+...
T Consensus        36 p~~lLl~GppGtGKT~la~aiA~~   59 (293)
T 3t15_A           36 PLILGIWGGKGQGKSFQCELVFRK   59 (293)
T ss_dssp             CSEEEEEECTTSCHHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHH
Confidence            346777899999999999887653

>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*

Probab=95.90  E-value=0.0047  Score=45.98  Aligned_cols=22  Identities=27%  Similarity=0.214  Sum_probs=19.3

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhh
Q 036449            7 IKCVTVGDGAVGKTCLLISYTS   28 (197)
Q Consensus         7 ~~i~v~G~~~~GKstli~~~~~   28 (197)
                      -.+++.|++|+|||+|++.+..
T Consensus        38 ~~lll~G~~GtGKT~la~~i~~   59 (324)
T 1l8q_A           38 NPIFIYGSVGTGKTHLLQAAGN   59 (324)
T ss_dssp             SSEEEECSSSSSHHHHHHHHHH
T ss_pred             CeEEEECCCCCcHHHHHHHHHH
Confidence            4689999999999999988765

>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*

Probab=95.89  E-value=0.0043  Score=45.78  Aligned_cols=21  Identities=29%  Similarity=0.286  Sum_probs=18.0

Q ss_pred             eEEEEEcCCCCCHHHHHHHHh
Q 036449            7 IKCVTVGDGAVGKTCLLISYT   27 (197)
Q Consensus         7 ~~i~v~G~~~~GKstli~~~~   27 (197)
                      -.|+++|+.|+||||++..+.
T Consensus       106 ~vi~lvG~~GsGKTTl~~~LA  126 (296)
T 2px0_A          106 KYIVLFGSTGAGKTTTLAKLA  126 (296)
T ss_dssp             SEEEEEESTTSSHHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHHH
Confidence            468999999999999996654

>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}

Probab=95.89  E-value=0.0049  Score=45.50  Aligned_cols=23  Identities=22%  Similarity=0.210  Sum_probs=20.2

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhhC
Q 036449            7 IKCVTVGDGAVGKTCLLISYTSN   29 (197)
Q Consensus         7 ~~i~v~G~~~~GKstli~~~~~~   29 (197)
                      -.|++.|++|+|||+|++.+...
T Consensus        50 ~~vLL~Gp~GtGKT~la~ala~~   72 (301)
T 3cf0_A           50 KGVLFYGPPGCGKTLLAKAIANE   72 (301)
T ss_dssp             SEEEEECSSSSSHHHHHHHHHHH
T ss_pred             ceEEEECCCCcCHHHHHHHHHHH
Confidence            35899999999999999988764

>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...

Probab=95.87  E-value=0.0038  Score=45.11  Aligned_cols=25  Identities=24%  Similarity=0.219  Sum_probs=21.1

Q ss_pred             ceeEEEEEcCCCCCHHHHHHHHhhC
Q 036449            5 RFIKCVTVGDGAVGKTCLLISYTSN   29 (197)
Q Consensus         5 ~~~~i~v~G~~~~GKstli~~~~~~   29 (197)
                      +...|++.|..||||||+++.+...
T Consensus        23 ~~~~I~ieG~~GsGKST~~~~L~~~   47 (263)
T 1p5z_B           23 RIKKISIEGNIAAGKSTFVNILKQL   47 (263)
T ss_dssp             CCEEEEEECSTTSSHHHHHTTTGGG
T ss_pred             CceEEEEECCCCCCHHHHHHHHHHh
Confidence            4478999999999999999777653

>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}

Probab=95.86  E-value=0.0048  Score=49.42  Aligned_cols=22  Identities=27%  Similarity=0.333  Sum_probs=19.6

Q ss_pred             EEEEEcCCCCCHHHHHHHHhhC
Q 036449            8 KCVTVGDGAVGKTCLLISYTSN   29 (197)
Q Consensus         8 ~i~v~G~~~~GKstli~~~~~~   29 (197)
                      -++++|+.|+|||||++.+.+.
T Consensus        27 i~gLiGpNGaGKSTLlkiL~Gl   48 (538)
T 3ozx_A           27 ILGVLGKNGVGKTTVLKILAGE   48 (538)
T ss_dssp             EEEEECCTTSSHHHHHHHHTTS
T ss_pred             EEEEECCCCCcHHHHHHHHhcC
Confidence            4789999999999999988864

>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A

Probab=95.86  E-value=0.0048  Score=44.99  Aligned_cols=21  Identities=24%  Similarity=0.371  Sum_probs=18.2

Q ss_pred             EEEEEcCCCCCHHHHHHHHhh
Q 036449            8 KCVTVGDGAVGKTCLLISYTS   28 (197)
Q Consensus         8 ~i~v~G~~~~GKstli~~~~~   28 (197)
                      -++++|++|+|||||+..+..
T Consensus        32 i~~i~G~~GsGKTtl~~~l~~   52 (279)
T 1nlf_A           32 VGALVSPGGAGKSMLALQLAA   52 (279)
T ss_dssp             EEEEEESTTSSHHHHHHHHHH
T ss_pred             EEEEEcCCCCCHHHHHHHHHH
Confidence            478999999999999977764

>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}

Probab=95.86  E-value=0.0049  Score=50.04  Aligned_cols=22  Identities=23%  Similarity=0.270  Sum_probs=19.6

Q ss_pred             EEEEEcCCCCCHHHHHHHHhhC
Q 036449            8 KCVTVGDGAVGKTCLLISYTSN   29 (197)
Q Consensus         8 ~i~v~G~~~~GKstli~~~~~~   29 (197)
                      .++++|+.|+|||||++.+.+-
T Consensus       105 i~~LvGpNGaGKSTLLkiL~Gl  126 (608)
T 3j16_B          105 VLGLVGTNGIGKSTALKILAGK  126 (608)
T ss_dssp             EEEEECCTTSSHHHHHHHHHTS
T ss_pred             EEEEECCCCChHHHHHHHHhcC
Confidence            4899999999999999988764

>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*

Probab=95.85  E-value=0.0053  Score=46.71  Aligned_cols=19  Identities=26%  Similarity=0.431  Sum_probs=16.9

Q ss_pred             EEEEcCCCCCHHHHHHHHh
Q 036449            9 CVTVGDGAVGKTCLLISYT   27 (197)
Q Consensus         9 i~v~G~~~~GKstli~~~~   27 (197)
                      .+++|+.|+|||||++.+.
T Consensus        26 ~~i~G~NGaGKTTll~ai~   44 (365)
T 3qf7_A           26 TVVEGPNGAGKSSLFEAIS   44 (365)
T ss_dssp             EEEECCTTSSHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHH
Confidence            5599999999999998875

>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}

Probab=95.84  E-value=0.0066  Score=43.00  Aligned_cols=24  Identities=13%  Similarity=0.176  Sum_probs=19.7

Q ss_pred             ceeEEEEEcCCCCCHHHHHHHHhh
Q 036449            5 RFIKCVTVGDGAVGKTCLLISYTS   28 (197)
Q Consensus         5 ~~~~i~v~G~~~~GKstli~~~~~   28 (197)
                      -.++..++|++||||||+...+..
T Consensus         7 ~~~~~~~~G~pGsGKsT~a~~L~~   30 (230)
T 3gmt_A            7 HHMRLILLGAPGAGKGTQANFIKE   30 (230)
T ss_dssp             --CEEEEECCTTSCHHHHHHHHHH
T ss_pred             cccceeeECCCCCCHHHHHHHHHH
Confidence            358899999999999999977754

>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10

Probab=95.82  E-value=0.0084  Score=44.43  Aligned_cols=21  Identities=24%  Similarity=0.196  Sum_probs=18.0

Q ss_pred             eEEEEEcCCCCCHHHHHHHHh
Q 036449            7 IKCVTVGDGAVGKTCLLISYT   27 (197)
Q Consensus         7 ~~i~v~G~~~~GKstli~~~~   27 (197)
                      --|+++|++|+||||++..+.
T Consensus       105 ~vi~ivG~~GsGKTTl~~~LA  125 (306)
T 1vma_A          105 FVIMVVGVNGTGKTTSCGKLA  125 (306)
T ss_dssp             EEEEEECCTTSSHHHHHHHHH
T ss_pred             eEEEEEcCCCChHHHHHHHHH
Confidence            458999999999999996654

>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A

Probab=95.82  E-value=0.008  Score=44.52  Aligned_cols=23  Identities=30%  Similarity=0.290  Sum_probs=19.6

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhhC
Q 036449            7 IKCVTVGDGAVGKTCLLISYTSN   29 (197)
Q Consensus         7 ~~i~v~G~~~~GKstli~~~~~~   29 (197)
                      .-|+|+|++|||||+|...+...
T Consensus        11 ~~i~i~GptgsGKt~la~~La~~   33 (316)
T 3foz_A           11 KAIFLMGPTASGKTALAIELRKI   33 (316)
T ss_dssp             EEEEEECCTTSCHHHHHHHHHHH
T ss_pred             cEEEEECCCccCHHHHHHHHHHh
Confidence            45789999999999999888653

>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}

Probab=95.81  E-value=0.0043  Score=50.37  Aligned_cols=22  Identities=27%  Similarity=0.264  Sum_probs=19.7

Q ss_pred             EEEEEcCCCCCHHHHHHHHhhC
Q 036449            8 KCVTVGDGAVGKTCLLISYTSN   29 (197)
Q Consensus         8 ~i~v~G~~~~GKstli~~~~~~   29 (197)
                      .++++|++|+|||||++.+.+-
T Consensus       383 ~~~ivG~sGsGKSTll~~l~g~  404 (598)
T 3qf4_B          383 KVALVGPTGSGKTTIVNLLMRF  404 (598)
T ss_dssp             EEEEECCTTSSTTHHHHHHTTS
T ss_pred             EEEEECCCCCcHHHHHHHHhcC
Confidence            5899999999999999888764

>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*

Probab=95.81  E-value=0.0079  Score=44.32  Aligned_cols=23  Identities=26%  Similarity=0.271  Sum_probs=19.8

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhhC
Q 036449            7 IKCVTVGDGAVGKTCLLISYTSN   29 (197)
Q Consensus         7 ~~i~v~G~~~~GKstli~~~~~~   29 (197)
                      -.+++.|++|+|||++++.+...
T Consensus        48 ~~~ll~G~~GtGKt~la~~la~~   70 (311)
T 4fcw_A           48 GSFLFLGPTGVGKTELAKTLAAT   70 (311)
T ss_dssp             EEEEEESCSSSSHHHHHHHHHHH
T ss_pred             eEEEEECCCCcCHHHHHHHHHHH
Confidence            46999999999999999877653

>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1

Probab=95.80  E-value=0.0068  Score=43.12  Aligned_cols=24  Identities=25%  Similarity=0.211  Sum_probs=20.4

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHhhC
Q 036449            6 FIKCVTVGDGAVGKTCLLISYTSN   29 (197)
Q Consensus         6 ~~~i~v~G~~~~GKstli~~~~~~   29 (197)
                      ...|++.|..||||||+++.+...
T Consensus         2 ~~~i~~~G~~g~GKtt~~~~l~~~   25 (241)
T 2ocp_A            2 PRRLSIEGNIAVGKSTFVKLLTKT   25 (241)
T ss_dssp             CEEEEEEECTTSSHHHHHHHHHHH
T ss_pred             CeEEEEEcCCCCCHHHHHHHHHHH
Confidence            357999999999999999887653

>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}

Probab=95.78  E-value=0.0053  Score=46.51  Aligned_cols=23  Identities=22%  Similarity=0.072  Sum_probs=19.9

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHhh
Q 036449            6 FIKCVTVGDGAVGKTCLLISYTS   28 (197)
Q Consensus         6 ~~~i~v~G~~~~GKstli~~~~~   28 (197)
                      .-.+++.|++|+|||||++.+..
T Consensus        45 ~~~vli~G~~G~GKTtl~~~l~~   67 (386)
T 2qby_A           45 PNNIFIYGLTGTGKTAVVKFVLS   67 (386)
T ss_dssp             CCCEEEEECTTSSHHHHHHHHHH
T ss_pred             CCeEEEECCCCCCHHHHHHHHHH
Confidence            34689999999999999988775

>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*

Probab=95.74  E-value=0.0062  Score=49.49  Aligned_cols=22  Identities=23%  Similarity=0.226  Sum_probs=19.7

Q ss_pred             EEEEEcCCCCCHHHHHHHHhhC
Q 036449            8 KCVTVGDGAVGKTCLLISYTSN   29 (197)
Q Consensus         8 ~i~v~G~~~~GKstli~~~~~~   29 (197)
                      .++++|+.|+|||||++.+.+.
T Consensus       119 ~~~LiG~NGsGKSTLlkiL~Gl  140 (607)
T 3bk7_A          119 VVGIVGPNGTGKTTAVKILAGQ  140 (607)
T ss_dssp             EEEEECCTTSSHHHHHHHHTTS
T ss_pred             EEEEECCCCChHHHHHHHHhCC
Confidence            4899999999999999988764

>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}

Probab=95.73  E-value=0.006  Score=43.29  Aligned_cols=21  Identities=19%  Similarity=0.213  Sum_probs=17.6

Q ss_pred             EEEEEcCCCCCHHHHHHHHhh
Q 036449            8 KCVTVGDGAVGKTCLLISYTS   28 (197)
Q Consensus         8 ~i~v~G~~~~GKstli~~~~~   28 (197)
                      -++++|++|+|||||+..+..
T Consensus        25 ~~~i~G~~GsGKTtl~~~~~~   45 (247)
T 2dr3_A           25 VVLLSGGPGTGKTIFSQQFLW   45 (247)
T ss_dssp             EEEEEECTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            478999999999999866653

>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20

Probab=95.73  E-value=0.0069  Score=46.04  Aligned_cols=22  Identities=23%  Similarity=0.234  Sum_probs=19.7

Q ss_pred             EEEEEcCCCCCHHHHHHHHhhC
Q 036449            8 KCVTVGDGAVGKTCLLISYTSN   29 (197)
Q Consensus         8 ~i~v~G~~~~GKstli~~~~~~   29 (197)
                      .+++.|++|+|||||++.+...
T Consensus        46 ~~li~G~~G~GKTtl~~~l~~~   67 (389)
T 1fnn_A           46 RATLLGRPGTGKTVTLRKLWEL   67 (389)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHHH
Confidence            6999999999999999888754

>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*

Probab=95.71  E-value=0.0066  Score=44.62  Aligned_cols=23  Identities=22%  Similarity=0.231  Sum_probs=20.0

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHhh
Q 036449            6 FIKCVTVGDGAVGKTCLLISYTS   28 (197)
Q Consensus         6 ~~~i~v~G~~~~GKstli~~~~~   28 (197)
                      .-.+++.|++|+|||++++.+..
T Consensus        50 ~~~vll~G~~GtGKT~la~~la~   72 (310)
T 1ofh_A           50 PKNILMIGPTGVGKTEIARRLAK   72 (310)
T ss_dssp             CCCEEEECCTTSSHHHHHHHHHH
T ss_pred             CceEEEECCCCCCHHHHHHHHHH
Confidence            45699999999999999988765

>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A

Probab=95.71  E-value=0.0037  Score=50.56  Aligned_cols=22  Identities=23%  Similarity=0.175  Sum_probs=18.9

Q ss_pred             EEEEEcCCCCCHHHHHHHHhhC
Q 036449            8 KCVTVGDGAVGKTCLLISYTSN   29 (197)
Q Consensus         8 ~i~v~G~~~~GKstli~~~~~~   29 (197)
                      .++++|++|+|||||++.+.+-
T Consensus       369 ~~~ivG~sGsGKSTll~~l~g~  390 (578)
T 4a82_A          369 TVAFVGMSGGGKSTLINLIPRF  390 (578)
T ss_dssp             EEEEECSTTSSHHHHHTTTTTS
T ss_pred             EEEEECCCCChHHHHHHHHhcC
Confidence            5899999999999999766653

>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A

Probab=95.71  E-value=0.0072  Score=44.86  Aligned_cols=23  Identities=30%  Similarity=0.264  Sum_probs=19.8

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhhC
Q 036449            7 IKCVTVGDGAVGKTCLLISYTSN   29 (197)
Q Consensus         7 ~~i~v~G~~~~GKstli~~~~~~   29 (197)
                      .-|+|+|++|||||||...+...
T Consensus         4 ~~i~i~GptgsGKt~la~~La~~   26 (322)
T 3exa_A            4 KLVAIVGPTAVGKTKTSVMLAKR   26 (322)
T ss_dssp             EEEEEECCTTSCHHHHHHHHHHT
T ss_pred             cEEEEECCCcCCHHHHHHHHHHh
Confidence            35889999999999999888754

>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}

Probab=95.70  E-value=0.0033  Score=40.99  Aligned_cols=23  Identities=9%  Similarity=0.078  Sum_probs=19.7

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhhC
Q 036449            7 IKCVTVGDGAVGKTCLLISYTSN   29 (197)
Q Consensus         7 ~~i~v~G~~~~GKstli~~~~~~   29 (197)
                      ..|++.|++|+|||++.+.+...
T Consensus        28 ~~vll~G~~GtGKt~lA~~i~~~   50 (143)
T 3co5_A           28 SPVFLTGEAGSPFETVARYFHKN   50 (143)
T ss_dssp             SCEEEEEETTCCHHHHHGGGCCT
T ss_pred             CcEEEECCCCccHHHHHHHHHHh
Confidence            46999999999999999777654

>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}

Probab=95.67  E-value=0.0064  Score=48.70  Aligned_cols=22  Identities=18%  Similarity=0.219  Sum_probs=19.7

Q ss_pred             EEEEEcCCCCCHHHHHHHHhhC
Q 036449            8 KCVTVGDGAVGKTCLLISYTSN   29 (197)
Q Consensus         8 ~i~v~G~~~~GKstli~~~~~~   29 (197)
                      .++++|+.|+|||||++.+.+-
T Consensus       296 i~~i~G~nGsGKSTLl~~l~Gl  317 (538)
T 3ozx_A          296 IIGILGPNGIGKTTFARILVGE  317 (538)
T ss_dssp             EEEEECCTTSSHHHHHHHHTTS
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            4789999999999999998864

>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}

Probab=95.66  E-value=0.0048  Score=50.00  Aligned_cols=22  Identities=18%  Similarity=0.250  Sum_probs=19.3

Q ss_pred             EEEEEcCCCCCHHHHHHHHhhC
Q 036449            8 KCVTVGDGAVGKTCLLISYTSN   29 (197)
Q Consensus         8 ~i~v~G~~~~GKstli~~~~~~   29 (197)
                      .++++|++|+|||||++.+.+-
T Consensus       371 ~~~ivG~sGsGKSTll~~l~g~  392 (587)
T 3qf4_A          371 LVAVLGETGSGKSTLMNLIPRL  392 (587)
T ss_dssp             EEEEECSSSSSHHHHHHTTTTS
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            5899999999999999877654

>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}

Probab=95.62  E-value=0.0077  Score=48.25  Aligned_cols=22  Identities=23%  Similarity=0.267  Sum_probs=19.9

Q ss_pred             EEEEEcCCCCCHHHHHHHHhhC
Q 036449            8 KCVTVGDGAVGKTCLLISYTSN   29 (197)
Q Consensus         8 ~i~v~G~~~~GKstli~~~~~~   29 (197)
                      .++++|+.|+|||||++.+.+-
T Consensus       314 ~~~i~G~NGsGKSTLlk~l~Gl  335 (538)
T 1yqt_A          314 VIGIVGPNGIGKTTFVKMLAGV  335 (538)
T ss_dssp             EEEEECCTTSSHHHHHHHHHTS
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            4789999999999999998874

>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}

Probab=95.62  E-value=0.01  Score=44.46  Aligned_cols=23  Identities=26%  Similarity=0.322  Sum_probs=20.0

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhhC
Q 036449            7 IKCVTVGDGAVGKTCLLISYTSN   29 (197)
Q Consensus         7 ~~i~v~G~~~~GKstli~~~~~~   29 (197)
                      .-|+|+|++|||||||...+...
T Consensus        41 ~lIvI~GPTgsGKTtLa~~LA~~   63 (339)
T 3a8t_A           41 KLLVLMGATGTGKSRLSIDLAAH   63 (339)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHTT
T ss_pred             ceEEEECCCCCCHHHHHHHHHHH
Confidence            46999999999999999888753

>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=95.59  E-value=0.0074  Score=45.30  Aligned_cols=22  Identities=18%  Similarity=0.332  Sum_probs=19.2

Q ss_pred             EEEEEcCCCCCHHHHHHHHhhC
Q 036449            8 KCVTVGDGAVGKTCLLISYTSN   29 (197)
Q Consensus         8 ~i~v~G~~~~GKstli~~~~~~   29 (197)
                      ++++.|++|+||||+++.+...
T Consensus        48 ~~ll~Gp~G~GKTtla~~la~~   69 (340)
T 1sxj_C           48 HLLFYGPPGTGKTSTIVALARE   69 (340)
T ss_dssp             CEEEECSSSSSHHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHHH
Confidence            4899999999999999877653

>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*

Probab=95.57  E-value=0.0081  Score=48.80  Aligned_cols=22  Identities=23%  Similarity=0.267  Sum_probs=19.8

Q ss_pred             EEEEEcCCCCCHHHHHHHHhhC
Q 036449            8 KCVTVGDGAVGKTCLLISYTSN   29 (197)
Q Consensus         8 ~i~v~G~~~~GKstli~~~~~~   29 (197)
                      .++++|+.|+|||||++.+.+-
T Consensus       384 i~~i~G~NGsGKSTLlk~l~Gl  405 (607)
T 3bk7_A          384 VIGIVGPNGIGKTTFVKMLAGV  405 (607)
T ss_dssp             EEEEECCTTSSHHHHHHHHHTS
T ss_pred             EEEEECCCCCCHHHHHHHHhcC
Confidence            4789999999999999998874

>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}

Probab=95.56  E-value=0.0083  Score=41.88  Aligned_cols=23  Identities=26%  Similarity=0.263  Sum_probs=19.8

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHhh
Q 036449            6 FIKCVTVGDGAVGKTCLLISYTS   28 (197)
Q Consensus         6 ~~~i~v~G~~~~GKstli~~~~~   28 (197)
                      .+.|.+.|.+|+||||+.+.+..
T Consensus         3 ~~~i~i~G~~gsGkst~~~~l~~   25 (219)
T 2h92_A            3 AINIALDGPAAAGKSTIAKRVAS   25 (219)
T ss_dssp             CCCEEEECCTTSSHHHHHHHHHH
T ss_pred             ceEEEEECCCCCCHHHHHHHHHH
Confidence            36799999999999999977754

>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*

Probab=95.52  E-value=0.0092  Score=41.41  Aligned_cols=19  Identities=26%  Similarity=0.433  Sum_probs=16.5

Q ss_pred             EEEEcCCCCCHHHHHHHHh
Q 036449            9 CVTVGDGAVGKTCLLISYT   27 (197)
Q Consensus         9 i~v~G~~~~GKstli~~~~   27 (197)
                      .+++|+.|+||||++.++.
T Consensus        26 ~~I~G~NgsGKStil~ai~   44 (203)
T 3qks_A           26 NLIIGQNGSGKSSLLDAIL   44 (203)
T ss_dssp             EEEECCTTSSHHHHHHHHH
T ss_pred             EEEEcCCCCCHHHHHHHHH
Confidence            5788999999999997764

>1c9k_A COBU, adenosylcobinamide kinase; alpha/beta structure rossmann fold P-loop, transferase; HET: 5GP; 2.20A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1cbu_A

Probab=95.52  E-value=0.0083  Score=40.80  Aligned_cols=21  Identities=14%  Similarity=0.204  Sum_probs=19.1

Q ss_pred             EEEEcCCCCCHHHHHHHHhhC
Q 036449            9 CVTVGDGAVGKTCLLISYTSN   29 (197)
Q Consensus         9 i~v~G~~~~GKstli~~~~~~   29 (197)
                      |+|+|.+|||||++..++...
T Consensus         2 ilV~Gg~~SGKS~~A~~la~~   22 (180)
T 1c9k_A            2 ILVTGGARSGKSRHAEALIGD   22 (180)
T ss_dssp             EEEEECTTSSHHHHHHHHHCS
T ss_pred             EEEECCCCCcHHHHHHHHHhc
Confidence            789999999999999998755

>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}

Probab=95.50  E-value=0.0084  Score=44.75  Aligned_cols=23  Identities=17%  Similarity=0.224  Sum_probs=20.3

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhhC
Q 036449            7 IKCVTVGDGAVGKTCLLISYTSN   29 (197)
Q Consensus         7 ~~i~v~G~~~~GKstli~~~~~~   29 (197)
                      -.|++.|++|+|||+|++.+...
T Consensus        46 ~~iLL~GppGtGKT~la~ala~~   68 (322)
T 1xwi_A           46 RGILLFGPPGTGKSYLAKAVATE   68 (322)
T ss_dssp             SEEEEESSSSSCHHHHHHHHHHH
T ss_pred             ceEEEECCCCccHHHHHHHHHHH
Confidence            46999999999999999888764

>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*

Probab=95.50  E-value=0.0094  Score=41.75  Aligned_cols=23  Identities=13%  Similarity=-0.034  Sum_probs=19.5

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHhh
Q 036449            6 FIKCVTVGDGAVGKTCLLISYTS   28 (197)
Q Consensus         6 ~~~i~v~G~~~~GKstli~~~~~   28 (197)
                      ..-|++.|.+|+||||+++.+..
T Consensus         6 g~~i~~eG~~gsGKsT~~~~l~~   28 (213)
T 4edh_A            6 GLFVTLEGPEGAGKSTNRDYLAE   28 (213)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHHH
T ss_pred             ceEEEEEcCCCCCHHHHHHHHHH
Confidence            45689999999999999987753

>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}

Probab=95.50  E-value=0.0087  Score=44.68  Aligned_cols=22  Identities=27%  Similarity=0.425  Sum_probs=19.6

Q ss_pred             EEEEEcCCCCCHHHHHHHHhhC
Q 036449            8 KCVTVGDGAVGKTCLLISYTSN   29 (197)
Q Consensus         8 ~i~v~G~~~~GKstli~~~~~~   29 (197)
                      -++|.|+.|+|||||++.+...
T Consensus        33 ~v~i~G~~G~GKT~Ll~~~~~~   54 (350)
T 2qen_A           33 LTLLLGIRRVGKSSLLRAFLNE   54 (350)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHH
T ss_pred             eEEEECCCcCCHHHHHHHHHHH
Confidence            5889999999999999988764

>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}

Probab=95.49  E-value=0.0097  Score=44.13  Aligned_cols=23  Identities=26%  Similarity=0.290  Sum_probs=19.9

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHhh
Q 036449            6 FIKCVTVGDGAVGKTCLLISYTS   28 (197)
Q Consensus         6 ~~~i~v~G~~~~GKstli~~~~~   28 (197)
                      .-.+++.|++|+|||+|+..+..
T Consensus       152 ~~~lll~G~~GtGKT~La~aia~  174 (308)
T 2qgz_A          152 QKGLYLYGDMGIGKSYLLAAMAH  174 (308)
T ss_dssp             CCEEEEECSTTSSHHHHHHHHHH
T ss_pred             CceEEEECCCCCCHHHHHHHHHH
Confidence            46799999999999999977664

>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11

Probab=95.47  E-value=0.0081  Score=45.40  Aligned_cols=22  Identities=23%  Similarity=0.132  Sum_probs=19.5

Q ss_pred             EEEEEcCCCCCHHHHHHHHhhC
Q 036449            8 KCVTVGDGAVGKTCLLISYTSN   29 (197)
Q Consensus         8 ~i~v~G~~~~GKstli~~~~~~   29 (197)
                      -+.++|++|+|||||+..+...
T Consensus       133 i~~I~G~~GsGKTTL~~~l~~~  154 (349)
T 1pzn_A          133 ITEVFGEFGSGKTQLAHTLAVM  154 (349)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            4789999999999999888764

>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C

Probab=95.47  E-value=0.0095  Score=44.39  Aligned_cols=23  Identities=17%  Similarity=0.215  Sum_probs=20.2

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhhC
Q 036449            7 IKCVTVGDGAVGKTCLLISYTSN   29 (197)
Q Consensus         7 ~~i~v~G~~~~GKstli~~~~~~   29 (197)
                      -.|++.|++|+|||+|++.+...
T Consensus        52 ~~vLl~GppGtGKT~la~aia~~   74 (322)
T 3eie_A           52 SGILLYGPPGTGKSYLAKAVATE   74 (322)
T ss_dssp             CEEEEECSSSSCHHHHHHHHHHH
T ss_pred             CeEEEECCCCCcHHHHHHHHHHH
Confidence            46999999999999999888653

>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}

Probab=95.45  E-value=0.0088  Score=48.59  Aligned_cols=22  Identities=27%  Similarity=0.409  Sum_probs=19.6

Q ss_pred             EEEEcCCCCCHHHHHHHHhhCC
Q 036449            9 CVTVGDGAVGKTCLLISYTSNT   30 (197)
Q Consensus         9 i~v~G~~~~GKstli~~~~~~~   30 (197)
                      ++++|+.|+|||||++.+.+-.
T Consensus       381 v~iiG~NGsGKSTLlk~l~Gl~  402 (608)
T 3j16_B          381 LVMMGENGTGKTTLIKLLAGAL  402 (608)
T ss_dssp             EEEESCTTSSHHHHHHHHHTSS
T ss_pred             EEEECCCCCcHHHHHHHHhcCC
Confidence            7999999999999999888643

>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}

Probab=95.44  E-value=0.01  Score=44.39  Aligned_cols=24  Identities=21%  Similarity=0.207  Sum_probs=20.6

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHhhC
Q 036449            6 FIKCVTVGDGAVGKTCLLISYTSN   29 (197)
Q Consensus         6 ~~~i~v~G~~~~GKstli~~~~~~   29 (197)
                      .-.|++.|++|+|||++++.+...
T Consensus        55 ~~~vll~G~~GtGKT~la~~ia~~   78 (338)
T 3pfi_A           55 LDHILFSGPAGLGKTTLANIISYE   78 (338)
T ss_dssp             CCCEEEECSTTSSHHHHHHHHHHH
T ss_pred             CCeEEEECcCCCCHHHHHHHHHHH
Confidence            356999999999999999988654

>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}

Probab=95.43  E-value=0.0096  Score=45.12  Aligned_cols=24  Identities=17%  Similarity=0.087  Sum_probs=20.4

Q ss_pred             ceeEEEEEcCCCCCHHHHHHHHhh
Q 036449            5 RFIKCVTVGDGAVGKTCLLISYTS   28 (197)
Q Consensus         5 ~~~~i~v~G~~~~GKstli~~~~~   28 (197)
                      ..-.+++.|++|+|||++++.+..
T Consensus        43 ~~~~vll~G~~G~GKT~l~~~~~~   66 (387)
T 2v1u_A           43 KPSNALLYGLTGTGKTAVARLVLR   66 (387)
T ss_dssp             CCCCEEECBCTTSSHHHHHHHHHH
T ss_pred             CCCcEEEECCCCCCHHHHHHHHHH
Confidence            345799999999999999988765

>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}

Probab=95.42  E-value=0.0084  Score=47.18  Aligned_cols=23  Identities=26%  Similarity=0.310  Sum_probs=19.5

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHhh
Q 036449            6 FIKCVTVGDGAVGKTCLLISYTS   28 (197)
Q Consensus         6 ~~~i~v~G~~~~GKstli~~~~~   28 (197)
                      .-+++++|++|+|||++++.+..
T Consensus       201 ~~~~LL~G~pG~GKT~la~~la~  223 (468)
T 3pxg_A          201 KNNPVLIGEPGVGKTAIAEGLAQ  223 (468)
T ss_dssp             SCEEEEESCTTTTTHHHHHHHHH
T ss_pred             CCCeEEECCCCCCHHHHHHHHHH
Confidence            35789999999999999977654

>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*

Probab=95.41  E-value=0.098  Score=38.74  Aligned_cols=43  Identities=12%  Similarity=0.248  Sum_probs=25.4

Q ss_pred             cEEEEEEeCCCchh-HHHHHHHHHHHHhhhCCCCCEEEEeeCCcc
Q 036449           79 DVFILAFSLISKAS-YENVSKKWIPELKHYAPGVPIILVGTKLDL  122 (197)
Q Consensus        79 ~~~i~v~d~~~~~s-~~~~~~~~~~~i~~~~~~~~~ivv~nK~D~  122 (197)
                      ..-++++|=-+.-+ -+.. ..++..+....++..+|+..|..+.
T Consensus       105 ~~~vliiDEi~~l~~~~~~-~~L~~~le~~~~~~~iI~~~n~~~~  148 (324)
T 3u61_B          105 RQKVIVIDEFDRSGLAESQ-RHLRSFMEAYSSNCSIIITANNIDG  148 (324)
T ss_dssp             CEEEEEEESCCCGGGHHHH-HHHHHHHHHHGGGCEEEEEESSGGG
T ss_pred             CCeEEEEECCcccCcHHHH-HHHHHHHHhCCCCcEEEEEeCCccc
Confidence            55666777655544 3222 4555555554446788888887664

>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=95.38  E-value=0.0098  Score=44.59  Aligned_cols=21  Identities=24%  Similarity=0.373  Sum_probs=18.6

Q ss_pred             EEEEEcCCCCCHHHHHHHHhh
Q 036449            8 KCVTVGDGAVGKTCLLISYTS   28 (197)
Q Consensus         8 ~i~v~G~~~~GKstli~~~~~   28 (197)
                      .+++.|++|+|||++++.+..
T Consensus        60 ~~ll~G~~G~GKT~la~~la~   80 (353)
T 1sxj_D           60 HMLFYGPPGTGKTSTILALTK   80 (353)
T ss_dssp             CEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            499999999999999987764

>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}

Probab=95.37  E-value=0.0076  Score=42.66  Aligned_cols=24  Identities=25%  Similarity=0.088  Sum_probs=17.0

Q ss_pred             ceeEEEEEcCCCCCHHHHHHHHhh
Q 036449            5 RFIKCVTVGDGAVGKTCLLISYTS   28 (197)
Q Consensus         5 ~~~~i~v~G~~~~GKstli~~~~~   28 (197)
                      +..-|++.|.+||||||+++.+..
T Consensus        24 ~g~~I~~eG~~GsGKsT~~~~l~~   47 (227)
T 3v9p_A           24 RGKFITFEGIDGAGKTTHLQWFCD   47 (227)
T ss_dssp             CCCEEEEECCC---CHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHH
Confidence            346799999999999999977653

>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*

Probab=95.37  E-value=0.0043  Score=44.83  Aligned_cols=21  Identities=29%  Similarity=0.320  Sum_probs=18.6

Q ss_pred             EEEEEcCCCCCHHHHHHHHhh
Q 036449            8 KCVTVGDGAVGKTCLLISYTS   28 (197)
Q Consensus         8 ~i~v~G~~~~GKstli~~~~~   28 (197)
                      .+++.|++|+|||+|++.+..
T Consensus        46 ~vll~G~~GtGKT~la~~la~   66 (268)
T 2r62_A           46 GVLLVGPPGTGKTLLAKAVAG   66 (268)
T ss_dssp             CCCCBCSSCSSHHHHHHHHHH
T ss_pred             eEEEECCCCCcHHHHHHHHHH
Confidence            488999999999999988765

>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20

Probab=95.36  E-value=0.0091  Score=44.66  Aligned_cols=22  Identities=14%  Similarity=0.188  Sum_probs=19.3

Q ss_pred             EEEEEcCCCCCHHHHHHHHhhC
Q 036449            8 KCVTVGDGAVGKTCLLISYTSN   29 (197)
Q Consensus         8 ~i~v~G~~~~GKstli~~~~~~   29 (197)
                      .++|.|++|+|||+|++.+...
T Consensus        32 ~v~i~G~~G~GKT~L~~~~~~~   53 (357)
T 2fna_A           32 ITLVLGLRRTGKSSIIKIGINE   53 (357)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHH
T ss_pred             cEEEECCCCCCHHHHHHHHHHh
Confidence            5889999999999999888753

>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*

Probab=95.36  E-value=0.01  Score=42.81  Aligned_cols=24  Identities=13%  Similarity=0.203  Sum_probs=21.0

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhhCC
Q 036449            7 IKCVTVGDGAVGKTCLLISYTSNT   30 (197)
Q Consensus         7 ~~i~v~G~~~~GKstli~~~~~~~   30 (197)
                      ..|++.|++|+|||++.+.+....
T Consensus        30 ~~vll~G~~GtGKt~la~~i~~~~   53 (265)
T 2bjv_A           30 KPVLIIGERGTGKELIASRLHYLS   53 (265)
T ss_dssp             SCEEEECCTTSCHHHHHHHHHHTS
T ss_pred             CCEEEECCCCCcHHHHHHHHHHhc
Confidence            569999999999999998887653

>1ko7_A HPR kinase/phosphatase; protein kinase, phosphotransfer, protein phosphatase, dual activity, product, substrate, transferase, hydrolase; 1.95A {Staphylococcus xylosus} SCOP: c.98.2.1 c.91.1.2

Probab=95.33  E-value=0.012  Score=43.70  Aligned_cols=24  Identities=17%  Similarity=0.362  Sum_probs=21.2

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhhCC
Q 036449            7 IKCVTVGDGAVGKTCLLISYTSNT   30 (197)
Q Consensus         7 ~~i~v~G~~~~GKstli~~~~~~~   30 (197)
                      .-|+++|++|+||||+...+....
T Consensus       145 ~~vl~~G~sG~GKSt~a~~l~~~g  168 (314)
T 1ko7_A          145 VGVLITGDSGIGKSETALELIKRG  168 (314)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHTT
T ss_pred             EEEEEEeCCCCCHHHHHHHHHhcC
Confidence            358999999999999999998753

>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*

Probab=95.33  E-value=0.01  Score=44.82  Aligned_cols=23  Identities=17%  Similarity=0.328  Sum_probs=19.8

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhhC
Q 036449            7 IKCVTVGDGAVGKTCLLISYTSN   29 (197)
Q Consensus         7 ~~i~v~G~~~~GKstli~~~~~~   29 (197)
                      -.+++.|++|+|||++++.+...
T Consensus        71 ~~vLl~GppGtGKT~la~~la~~   93 (368)
T 3uk6_A           71 RAVLIAGQPGTGKTAIAMGMAQA   93 (368)
T ss_dssp             CEEEEEESTTSSHHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHHH
Confidence            36999999999999999887653

>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A

Probab=95.30  E-value=0.012  Score=50.19  Aligned_cols=24  Identities=17%  Similarity=0.317  Sum_probs=21.0

Q ss_pred             EEEEEcCCCCCHHHHHHHHhhCCC
Q 036449            8 KCVTVGDGAVGKTCLLISYTSNTF   31 (197)
Q Consensus         8 ~i~v~G~~~~GKstli~~~~~~~~   31 (197)
                      .++++|+.|+|||||++.+.++..
T Consensus       463 ~v~LiGpNGsGKSTLLk~LagG~i  486 (986)
T 2iw3_A          463 RYGICGPNGCGKSTLMRAIANGQV  486 (986)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHTCS
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCc
Confidence            479999999999999999986543

>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}

Probab=95.28  E-value=0.0066  Score=48.71  Aligned_cols=24  Identities=17%  Similarity=0.164  Sum_probs=20.3

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHhhC
Q 036449            6 FIKCVTVGDGAVGKTCLLISYTSN   29 (197)
Q Consensus         6 ~~~i~v~G~~~~GKstli~~~~~~   29 (197)
                      .-.|+++|.+|||||||++.+...
T Consensus       369 G~iI~LiG~sGSGKSTLar~La~~  392 (552)
T 3cr8_A          369 GFTVFFTGLSGAGKSTLARALAAR  392 (552)
T ss_dssp             CEEEEEEESSCHHHHHHHHHHHHH
T ss_pred             ceEEEEECCCCChHHHHHHHHHHh
Confidence            356999999999999999887653

>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}

Probab=95.27  E-value=0.016  Score=40.86  Aligned_cols=21  Identities=24%  Similarity=0.252  Sum_probs=18.3

Q ss_pred             CceeEEEEEcCCCCCHHHHHH
Q 036449            4 SRFIKCVTVGDGAVGKTCLLI   24 (197)
Q Consensus         4 ~~~~~i~v~G~~~~GKstli~   24 (197)
                      ...++|++.|++|+||||++-
T Consensus         4 ~g~l~I~~~~kgGvGKTt~a~   24 (228)
T 2r8r_A            4 RGRLKVFLGAAPGVGKTYAML   24 (228)
T ss_dssp             CCCEEEEEESSTTSSHHHHHH
T ss_pred             CceEEEEEECCCCCcHHHHHH
Confidence            346899999999999999963

>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*

Probab=95.26  E-value=0.0096  Score=47.52  Aligned_cols=19  Identities=26%  Similarity=0.490  Sum_probs=17.3

Q ss_pred             EEEEEcCCCCCHHHHHHHH
Q 036449            8 KCVTVGDGAVGKTCLLISY   26 (197)
Q Consensus         8 ~i~v~G~~~~GKstli~~~   26 (197)
                      -++++|++|+|||||++.+
T Consensus        41 ~~~l~G~nGsGKSTL~~~~   59 (525)
T 1tf7_A           41 STLVSGTSGTGKTLFSIQF   59 (525)
T ss_dssp             EEEEEESTTSSHHHHHHHH
T ss_pred             EEEEEcCCCCCHHHHHHHH
Confidence            4789999999999999885

>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20

Probab=95.24  E-value=0.012  Score=44.76  Aligned_cols=24  Identities=17%  Similarity=0.230  Sum_probs=20.6

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHhhC
Q 036449            6 FIKCVTVGDGAVGKTCLLISYTSN   29 (197)
Q Consensus         6 ~~~i~v~G~~~~GKstli~~~~~~   29 (197)
                      ...+++.|++|+|||++.+.+...
T Consensus        72 ~~~ill~Gp~GtGKT~la~~la~~   95 (376)
T 1um8_A           72 KSNILLIGPTGSGKTLMAQTLAKH   95 (376)
T ss_dssp             CCCEEEECCTTSSHHHHHHHHHHH
T ss_pred             CCCEEEECCCCCCHHHHHHHHHHH
Confidence            357999999999999999887653

>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A

Probab=95.21  E-value=0.011  Score=45.24  Aligned_cols=25  Identities=8%  Similarity=-0.033  Sum_probs=21.4

Q ss_pred             ceeEEEEEcCCCCCHHHHHHHHhhC
Q 036449            5 RFIKCVTVGDGAVGKTCLLISYTSN   29 (197)
Q Consensus         5 ~~~~i~v~G~~~~GKstli~~~~~~   29 (197)
                      ...+++++|++|+|||++++.+...
T Consensus        34 ~~~~~~i~G~~G~GKs~~~~~~~~~   58 (392)
T 4ag6_A           34 TNSNWTILAKPGAGKSFTAKMLLLR   58 (392)
T ss_dssp             CCCCEEEECCTTSSHHHHHHHHHHH
T ss_pred             ccCceEEEcCCCCCHHHHHHHHHHH
Confidence            4568999999999999999887754

>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*

Probab=95.21  E-value=0.011  Score=46.03  Aligned_cols=22  Identities=32%  Similarity=0.268  Sum_probs=19.2

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhh
Q 036449            7 IKCVTVGDGAVGKTCLLISYTS   28 (197)
Q Consensus         7 ~~i~v~G~~~~GKstli~~~~~   28 (197)
                      -.+++.|++|+|||+|++.+.+
T Consensus       131 ~~lll~Gp~G~GKTtLa~aia~  152 (440)
T 2z4s_A          131 NPLFIYGGVGLGKTHLLQSIGN  152 (440)
T ss_dssp             CCEEEECSSSSSHHHHHHHHHH
T ss_pred             CeEEEECCCCCCHHHHHHHHHH
Confidence            4589999999999999987764

>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}

Probab=95.19  E-value=0.013  Score=44.41  Aligned_cols=24  Identities=21%  Similarity=0.104  Sum_probs=20.8

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHhhC
Q 036449            6 FIKCVTVGDGAVGKTCLLISYTSN   29 (197)
Q Consensus         6 ~~~i~v~G~~~~GKstli~~~~~~   29 (197)
                      .-.|++.|++|+|||+|++.+...
T Consensus       117 ~~~vLl~GppGtGKT~la~aia~~  140 (357)
T 3d8b_A          117 PKGILLFGPPGTGKTLIGKCIASQ  140 (357)
T ss_dssp             CSEEEEESSTTSSHHHHHHHHHHH
T ss_pred             CceEEEECCCCCCHHHHHHHHHHH
Confidence            457999999999999999988654

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	197
d2ngra_	191	c.37.1.8 (A:) CDC42 {Human (Homo sapiens) [TaxId:	9e-51
d1mh1a_	183	c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 96	3e-45
d2atxa1	185	c.37.1.8 (A:9-193) RhoQ {Human (Homo sapiens) [Tax	1e-44
d1g16a_	166	c.37.1.8 (A:) Rab-related protein Sec4 {Baker's ye	1e-42
d1kmqa_	177	c.37.1.8 (A:) RhoA {Human (Homo sapiens) [TaxId: 9	3e-42
d2bcgy1	194	c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast (Sac	9e-41
d1m7ba_	179	c.37.1.8 (A:) RhoE (RND3) {Mouse (Mus musculus) [T	1e-40
d2ew1a1	171	c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [Ta	9e-40
d2fu5c1	173	c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [Ta	4e-39
d1z0fa1	166	c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [Ta	7e-37
d2f9la1	175	c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [T	2e-36
d2f7sa1	186	c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [T	3e-36
d3raba_	169	c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxI	4e-36
d2bmea1	174	c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [Ta	5e-35
d2a5ja1	173	c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [Ta	6e-35
d1kaoa_	167	c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId:	8e-35
d2g6ba1	170	c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [T	2e-34
d1yzqa1	164	c.37.1.8 (A:14-177) Rab6 {Human (Homo sapiens) [Ta	2e-34
d1x3sa1	177	c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [Ta	5e-34
d1wmsa_	174	c.37.1.8 (A:) Rab9a {Human (Homo sapiens) [TaxId:	1e-32
d1ctqa_	166	c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapi	3e-30
d2fn4a1	173	c.37.1.8 (A:24-196) r-Ras {Human (Homo sapiens) [T	5e-30
d1r2qa_	170	c.37.1.8 (A:) Rab5a {Human (Homo sapiens) [TaxId:	6e-30
d1u8za_	168	c.37.1.8 (A:) Ras-related protein RalA {Cotton-top	6e-30
d1z08a1	167	c.37.1.8 (A:17-183) Rab21 {Human (Homo sapiens) [T	2e-29
d1c1ya_	167	c.37.1.8 (A:) Rap1A {Human (Homo sapiens) [TaxId:	2e-29
d1ky3a_	175	c.37.1.8 (A:) Rab-related protein ypt7p {Baker's y	4e-29
d2erya1	171	c.37.1.8 (A:10-180) r-Ras2 {Human (Homo sapiens) [	2e-28
d1vg8a_	184	c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId	7e-28
d1z0ja1	167	c.37.1.8 (A:2-168) Rab-22a {Mouse (Mus musculus) [	1e-27
d2erxa1	171	c.37.1.8 (A:6-176) di-Ras2 {Human (Homo sapiens) [	5e-27
d1ek0a_	170	c.37.1.8 (A:) Ypt51 {Baker's yeast (Saccharomyces	7e-27
d1x1ra1	169	c.37.1.8 (A:10-178) Ras-related protein M-Ras (XRa	3e-26
d1i2ma_	170	c.37.1.8 (A:) Ran {Human (Homo sapiens) [TaxId: 96	2e-24
d2atva1	168	c.37.1.8 (A:5-172) Ras-like estrogen-regulated gro	1e-23
d1z2aa1	164	c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [Ta	3e-23
d1z06a1	165	c.37.1.8 (A:32-196) Rab-33b {Mouse (Mus musculus)	6e-23
d1xtqa1	167	c.37.1.8 (A:3-169) GTP-binding protein RheB {Human	2e-22
d1r8sa_	160	c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo	3e-22
d2bmja1	175	c.37.1.8 (A:66-240) Centaurin gamma 1, G domain {H	4e-21
d1zj6a1	177	c.37.1.8 (A:2-178) ADP-ribosylation factor {Human	7e-19
d1svsa1	195	c.37.1.8 (A:32-60,A:182-347) Transducin (alpha sub	1e-18
d1e0sa_	173	c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo	2e-18
d2g3ya1	172	c.37.1.8 (A:73-244) GTP-binding protein GEM {Human	2e-18
d1fzqa_	176	c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus	3e-18
d1moza_	182	c.37.1.8 (A:) ADP-ribosylation factor {Baker's yea	2e-17
d2bcjq2	200	c.37.1.8 (Q:38-66,Q:184-354) Transducin (alpha sub	2e-17
d2qtvb1	166	c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharom	7e-17
d1zd9a1	164	c.37.1.8 (A:18-181) ADP-ribosylation factor {Human	9e-17
d2gjsa1	168	c.37.1.8 (A:91-258) Rad {Human (Homo sapiens) [Tax	2e-16
d1upta_	169	c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo	6e-16
d1f6ba_	186	c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus gr	8e-16
d1ksha_	165	c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus	4e-15
d1zcba2	200	c.37.1.8 (A:47-75,A:202-372) Transducin (alpha sub	2e-13
d2fh5b1	207	c.37.1.8 (B:63-269) Signal recognition particle re	4e-09
d1azta2	221	c.37.1.8 (A:35-65,A:202-391) Transducin (alpha sub	4e-07
d2gj8a1	161	c.37.1.8 (A:216-376) Probable tRNA modification GT	5e-04
d1mkya2	186	c.37.1.8 (A:173-358) Probable GTPase Der, N-termin	0.003

>d2ngra_ c.37.1.8 (A:) CDC42 {Human (Homo sapiens) [TaxId: 9606]} Length = 191

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: CDC42
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  160 bits (405), Expect = 9e-51
 Identities = 101/193 (52%), Positives = 136/193 (70%), Gaps = 7/193 (3%)

Query: 7   IKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQED 66
           IKCV VGDGAVGKTCLLISYT+N FP++YVPTVFDN++  V++ G    LGL+DTAGQED
Sbjct: 4   IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQED 63

Query: 67  YNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLRDDK 126
           Y+RLRPLSY   DVF++ FS++S +S+ENV +KW+PE+ H+ P  P +LVGT++DLRDD 
Sbjct: 64  YDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRDDP 123

Query: 127 QF--FIDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQQNVKAVFDAAIRVVLQPPKTK 184
                +      PI+    E+L + + A  Y+ECS+ TQ+ +K VFD AI   L+PP+ K
Sbjct: 124 STIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAILAALEPPEPK 183

Query: 185 KKKNKAQKACSIL 197
           K +      C +L
Sbjct: 184 KSRR-----CVLL 191

>d1mh1a_ c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 9606]} Length = 183

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rac
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  146 bits (368), Expect = 3e-45
 Identities = 114/181 (62%), Positives = 137/181 (75%), Gaps = 2/181 (1%)

Query: 3   ASRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWDTA 62
           + + IKCV VGDGAVGKTCLLISYT+N FP +Y+PTVFDN+SANV+V+G  VNLGLWDTA
Sbjct: 2   SPQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTA 61

Query: 63  GQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDL 122
           GQEDY+RLRPLSY   DV ++ FSL+S AS+ENV  KW PE++H+ P  PIILVGTKLDL
Sbjct: 62  GQEDYDRLRPLSYPQTDVSLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDL 121

Query: 123 RDDKQFF--IDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQQNVKAVFDAAIRVVLQP 180
           RDDK     +      PI+  QG  + K IGA  Y+ECS+ TQ+ +K VFD AIR VL P
Sbjct: 122 RDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAVLCP 181

Query: 181 P 181
           P
Sbjct: 182 P 182

>d2atxa1 c.37.1.8 (A:9-193) RhoQ {Human (Homo sapiens) [TaxId: 9606]} Length = 185

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoQ
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  144 bits (364), Expect = 1e-44
 Identities = 97/181 (53%), Positives = 133/181 (73%), Gaps = 2/181 (1%)

Query: 2   SASRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWDT 61
             +  +KCV VGDGAVGKTCLL+SY ++ FP +YVPTVFD+++ +V V G    LGL+DT
Sbjct: 5   PGALMLKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVFDHYAVSVTVGGKQYLLGLYDT 64

Query: 62  AGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLD 121
           AGQEDY+RLRPLSY   DVF++ FS+++ AS++NV ++W+PELK YAP VP +L+GT++D
Sbjct: 65  AGQEDYDRLRPLSYPMTDVFLICFSVVNPASFQNVKEEWVPELKEYAPNVPFLLIGTQID 124

Query: 122 LRDDKQFF--IDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQQNVKAVFDAAIRVVLQ 179
           LRDD +    ++     PI   QG++L K IGA  Y+ECS+ TQ+ +K VFD AI  +L 
Sbjct: 125 LRDDPKTLARLNDMKEKPICVEQGQKLAKEIGACCYVECSALTQKGLKTVFDEAIIAILT 184

Query: 180 P 180
           P
Sbjct: 185 P 185

>d1g16a_ c.37.1.8 (A:) Rab-related protein Sec4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 166

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-related protein Sec4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score =  138 bits (349), Expect = 1e-42
 Identities = 51/174 (29%), Positives = 87/174 (50%), Gaps = 13/174 (7%)

Query: 7   IKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNF-SANVVVNGSTVNLGLWDTAGQE 65
           +K + +GD  VGK+CLL+ +  + F   ++ T+  +F    V +NG  V L +WDTAGQE
Sbjct: 3   MKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQIWDTAGQE 62

Query: 66  DYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLRDD 125
            +  +    YRGA   IL + +  + ++ N+ + +    +H      ++LVG K D+   
Sbjct: 63  RFRTITTAYYRGAMGIILVYDITDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSDMETR 122

Query: 126 KQFFIDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQQNVKAVFDAAIRVVLQ 179
                        +  QGE L K +G P +IE S+K   NV  +F    +++ +
Sbjct: 123 VV-----------TADQGEALAKELGIP-FIESSAKNDDNVNEIFFTLAKLIQE 164

>d1kmqa_ c.37.1.8 (A:) RhoA {Human (Homo sapiens) [TaxId: 9606]} Length = 177

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoA
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  138 bits (347), Expect = 3e-42
 Identities = 89/175 (50%), Positives = 116/175 (66%), Gaps = 2/175 (1%)

Query: 7   IKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQED 66
            K V VGDGA GKTCLLI  + + FP  YVPTVF+N+ A++ V+G  V L LWDTAG ED
Sbjct: 3   KKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGLED 62

Query: 67  YNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLRDDK 126
           Y+RLRPLSY   DV ++ FS+ S  S EN+ +KW PE+KH+ P VPIILVG K DLR+D+
Sbjct: 63  YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDE 122

Query: 127 QFFIDH--PGAVPISTAQGEELRKLIGAPAYIECSSKTQQNVKAVFDAAIRVVLQ 179
               +       P+   +G ++   IGA  Y+ECS+KT+  V+ VF+ A R  LQ
Sbjct: 123 HTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQ 177

>d2bcgy1 c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 194

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Ytp1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score =  134 bits (339), Expect = 9e-41
 Identities = 50/187 (26%), Positives = 86/187 (45%), Gaps = 12/187 (6%)

Query: 7   IKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSA-NVVVNGSTVNLGLWDTAGQE 65
            K + +G+  VGK+CLL+ ++ +T+  DY+ T+  +F    V ++G TV L +WDTAGQE
Sbjct: 7   FKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWDTAGQE 66

Query: 66  DYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLRDD 125
            +  +    YRG+   I+ + +  + S+  V        ++    V  +LVG K DL+D 
Sbjct: 67  RFRTITSSYYRGSHGIIIVYDVTDQESFNGVKMWLQEIDRYATSTVLKLLVGNKCDLKDK 126

Query: 126 KQFFIDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQQNVKAVFDAAIRVVLQPPKTKK 185
           +    D            +E       P ++E S+    NV+  F    R + +    + 
Sbjct: 127 RVVEYD----------VAKEFADANKMP-FLETSALDSTNVEDAFLTMARQIKESMSQQN 175

Query: 186 KKNKAQK 192
                QK
Sbjct: 176 LNETTQK 182

>d1m7ba_ c.37.1.8 (A:) RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]} Length = 179

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoE (RND3)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score =  134 bits (336), Expect = 1e-40
 Identities = 65/176 (36%), Positives = 99/176 (56%), Gaps = 3/176 (1%)

Query: 7   IKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQED 66
            K V VGD   GKT LL  +  + FP +YVPTVF+N++A+  ++   + L LWDT+G   
Sbjct: 3   CKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYTASFEIDTQRIELSLWDTSGSPY 62

Query: 67  YNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLRDDK 126
           Y+ +RPLSY  +D  ++ F +    + ++V KKW  E++ + P   ++LVG K DLR D 
Sbjct: 63  YDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFCPNTKMLLVGCKSDLRTDV 122

Query: 127 QFFIDHP--GAVPISTAQGEELRKLIGAPAYIECSSKTQQN-VKAVFDAAIRVVLQ 179
              ++       P+S  QG  + K IGA  YIECS+   +N V+ +F  A    + 
Sbjct: 123 STLVELSNHRQTPVSYDQGANMAKQIGAATYIECSALQSENSVRDIFHVATLACVN 178

>d2ew1a1 c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [TaxId: 9606]} Length = 171

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab30
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  131 bits (330), Expect = 9e-40
 Identities = 48/177 (27%), Positives = 81/177 (45%), Gaps = 12/177 (6%)

Query: 7   IKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNF-SANVVVNGSTVNLGLWDTAGQE 65
            K V +G+  VGKTCL+  +T   FP     T+  +F    V +NG  V L +WDTAGQE
Sbjct: 6   FKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEINGEKVKLQIWDTAGQE 65

Query: 66  DYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLRDD 125
            +  +    YR A+  IL + +  + S+  + +      ++ +  V  +LVG K+DL + 
Sbjct: 66  RFRSITQSYYRSANALILTYDITCEESFRCLPEWLREIEQYASNKVITVLVGNKIDLAER 125

Query: 126 KQFFIDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQQNVKAVFDAAIRVVLQPPK 182
           ++                EE  +      Y+E S+K   NV+ +F      ++   +
Sbjct: 126 REVSQQR----------AEEFSEAQDMY-YLETSAKESDNVEKLFLDLACRLISEAR 171

>d2fu5c1 c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [TaxId: 10090]} Length = 173

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab8a
species: Mouse (Mus musculus) [TaxId: 10090]

 Score =  130 bits (327), Expect = 4e-39
 Identities = 49/184 (26%), Positives = 90/184 (48%), Gaps = 18/184 (9%)

Query: 7   IKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSA-NVVVNGSTVNLGLWDTAGQE 65
            K + +GD  VGKTC+L  ++ + F + ++ T+  +F    + ++G  + L +WDTAGQE
Sbjct: 7   FKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQE 66

Query: 66  DYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLRDD 125
            +  +    YRGA   +L + + ++ S++N+        +H +  V  +++G K D+ D 
Sbjct: 67  RFRTITTAYYRGAMGIMLVYDITNEKSFDNIRNWIRNIEEHASADVEKMILGNKCDVNDK 126

Query: 126 KQFFIDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQQNVKAVFDAAIRVVLQPPKTKK 185
           +Q              +GE+L    G   ++E S+K   NV+  F    R +      K 
Sbjct: 127 RQVS----------KERGEKLALDYGIK-FMETSAKANINVENAFFTLARDI------KA 169

Query: 186 KKNK 189
           K +K
Sbjct: 170 KMDK 173

>d1z0fa1 c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [TaxId: 9606]} Length = 166

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab14
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  124 bits (311), Expect = 7e-37
 Identities = 47/170 (27%), Positives = 81/170 (47%), Gaps = 12/170 (7%)

Query: 7   IKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVV-VNGSTVNLGLWDTAGQE 65
            K + +GD  VGK+CLL  +T   F  D   T+   F   ++ V+G  + L +WDTAGQE
Sbjct: 5   FKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQE 64

Query: 66  DYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLRDD 125
            +  +    YRGA   ++ + +  +++Y ++S           P   IIL+G K DL   
Sbjct: 65  RFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTNPNTVIILIGNKADLEAQ 124

Query: 126 KQFFIDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQQNVKAVFDAAIR 175
           +    +          + ++  +  G   ++E S+KT +NV+  F  A +
Sbjct: 125 RDVTYE----------EAKQFAEENGLL-FLEASAKTGENVEDAFLEAAK 163

>d2f9la1 c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [TaxId: 9606]} Length = 175

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab11b
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  123 bits (309), Expect = 2e-36
 Identities = 52/179 (29%), Positives = 80/179 (44%), Gaps = 12/179 (6%)

Query: 8   KCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVV-VNGSTVNLGLWDTAGQED 66
           K V +GD  VGK+ LL  +T N F  +   T+   F+   + V+G T+   +WDTAGQE 
Sbjct: 6   KVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQER 65

Query: 67  YNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLRDDK 126
           Y R+    YRGA   +L + +    +YENV +       H    + I+LVG K DLR  +
Sbjct: 66  YRRITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRHLR 125

Query: 127 QFFIDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQQNVKAVFDAAIRVVLQPPKTKK 185
               D          +     +      +IE S+    NV+  F   +  + +    K+
Sbjct: 126 AVPTD----------EARAFAEKNNLS-FIETSALDSTNVEEAFKNILTEIYRIVSQKQ 173

>d2f7sa1 c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [TaxId: 9606]} Length = 186

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab27b
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  123 bits (309), Expect = 3e-36
 Identities = 58/185 (31%), Positives = 82/185 (44%), Gaps = 23/185 (12%)

Query: 7   IKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVV-----------NGSTVN 55
           IK + +GD  VGKT  L  YT N F   ++ TV  +F    VV               V+
Sbjct: 6   IKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYNAQGPNGSSGKAFKVH 65

Query: 56  LGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAP-GVPII 114
           L LWDTAGQE +  L    +R A  F+L F L S+ S+ NV         +       I+
Sbjct: 66  LQLWDTAGQERFRSLTTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANAYCENPDIV 125

Query: 115 LVGTKLDLRDDKQFFIDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQQNVKAVFDAAI 174
           L+G K DL D ++              Q  EL    G P Y E S+ T QNV+   +  +
Sbjct: 126 LIGNKADLPDQREVN----------ERQARELADKYGIP-YFETSAATGQNVEKAVETLL 174

Query: 175 RVVLQ 179
            ++++
Sbjct: 175 DLIMK 179

>d3raba_ c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 169

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab3a
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score =  122 bits (306), Expect = 4e-36
 Identities = 48/173 (27%), Positives = 80/173 (46%), Gaps = 12/173 (6%)

Query: 8   KCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNF-SANVVVNGSTVNLGLWDTAGQED 66
           K + +G+ +VGKT  L  Y  ++F   +V TV  +F    +  N   + L +WDTAGQE 
Sbjct: 7   KILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDTAGQER 66

Query: 67  YNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLRDDK 126
           Y  +    YRGA  FIL + + ++ S+  V         +      ++LVG K D+ D++
Sbjct: 67  YRTITTAYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYSWDNAQVLLVGNKCDMEDER 126

Query: 127 QFFIDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQQNVKAVFDAAIRVVLQ 179
               +             +L   +G   + E S+K   NVK  F+  + V+ +
Sbjct: 127 VVSSERG----------RQLADHLGFE-FFEASAKDNINVKQTFERLVDVICE 168

>d2bmea1 c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [TaxId: 9606]} Length = 174

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab4a
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  119 bits (299), Expect = 5e-35
 Identities = 46/179 (25%), Positives = 77/179 (43%), Gaps = 12/179 (6%)

Query: 8   KCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNF-SANVVVNGSTVNLGLWDTAGQED 66
           K + +G+   GK+CLL  +    F  D   T+   F S  + V G  V L +WDTAGQE 
Sbjct: 7   KFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGQER 66

Query: 67  YNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLRDDK 126
           +  +    YRGA   +L + + S+ +Y  ++          +  + IIL G K DL  D+
Sbjct: 67  FRSVTRSYYRGAAGALLVYDITSRETYNALTNWLTDARMLASQNIVIILCGNKKDLDADR 126

Query: 127 QFFIDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQQNVKAVFDAAIRVVLQPPKTKK 185
           +                    +      ++E S+ T +NV+  F    R +L   ++ +
Sbjct: 127 EVTFLEA----------SRFAQENELM-FLETSALTGENVEEAFVQCARKILNKIESGE 174

>d2a5ja1 c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [TaxId: 9606]} Length = 173

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab2b
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  119 bits (299), Expect = 6e-35
 Identities = 46/173 (26%), Positives = 84/173 (48%), Gaps = 12/173 (6%)

Query: 8   KCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVV-VNGSTVNLGLWDTAGQED 66
           K + +GD  VGK+CLL+ +T   F   +  T+   F A +V ++G  + L +WDTAGQE 
Sbjct: 5   KYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVNIDGKQIKLQIWDTAGQES 64

Query: 67  YNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLRDDK 126
           +  +    YRGA   +L + +  + ++ +++       +H +  + I+L+G K DL   +
Sbjct: 65  FRSITRSYYRGAAGALLVYDITRRETFNHLTSWLEDARQHSSSNMVIMLIGNKSDLESRR 124

Query: 127 QFFIDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQQNVKAVFDAAIRVVLQ 179
               +           GE   +  G   ++E S+KT  NV+  F    + + +
Sbjct: 125 DVKREE----------GEAFAREHGLI-FMETSAKTACNVEEAFINTAKEIYR 166

>d1kaoa_ c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId: 9606]} Length = 167

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rap2a
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  118 bits (297), Expect = 8e-35
 Identities = 49/170 (28%), Positives = 86/170 (50%), Gaps = 12/170 (7%)

Query: 7   IKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQED 66
            K V +G G VGK+ L + + + TF   Y PT+ D +   + V+ S   L + DTAG E 
Sbjct: 4   YKVVVLGSGGVGKSALTVQFVTGTFIEKYDPTIEDFYRKEIEVDSSPSVLEILDTAGTEQ 63

Query: 67  YNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYA-PGVPIILVGTKLDLRDD 125
           +  +R L  +    FIL +SL+++ S++++       ++      VP+ILVG K+DL  +
Sbjct: 64  FASMRDLYIKNGQGFILVYSLVNQQSFQDIKPMRDQIIRVKRYEKVPVILVGNKVDLESE 123

Query: 126 KQFFIDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQQNVKAVFDAAIR 175
           ++              +G  L +  G P ++E S+K++  V  +F   +R
Sbjct: 124 REVSSS----------EGRALAEEWGCP-FMETSAKSKTMVDELFAEIVR 162

>d2g6ba1 c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [TaxId: 9606]} Length = 170

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab26
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  118 bits (295), Expect = 2e-34
 Identities = 53/174 (30%), Positives = 88/174 (50%), Gaps = 13/174 (7%)

Query: 8   KCVTVGDGAVGKTCLLISYTSNTF-PTDYVPTVFDNF-SANVVVNGSTVNLGLWDTAGQE 65
           K + VGD  VGKTCLL+ +    F    ++ TV  +F +  + V+G  V L +WDTAGQE
Sbjct: 8   KVMLVGDSGVGKTCLLVRFKDGAFLAGTFISTVGIDFRNKVLDVDGVKVKLQMWDTAGQE 67

Query: 66  DYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLRDD 125
            +  +    YR A   +L + + +KAS++N+        ++    V ++L+G K+D   +
Sbjct: 68  RFRSVTHAYYRDAHALLLLYDVTNKASFDNIQAWLTEIHEYAQHDVALMLLGNKVDSAHE 127

Query: 126 KQFFIDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQQNVKAVFDAAIRVVLQ 179
           +           +    GE+L K  G P ++E S+KT  NV   F A  + + +
Sbjct: 128 R----------VVKREDGEKLAKEYGLP-FMETSAKTGLNVDLAFTAIAKELKR 170

>d1yzqa1 c.37.1.8 (A:14-177) Rab6 {Human (Homo sapiens) [TaxId: 9606]} Length = 164

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab6
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  117 bits (293), Expect = 2e-34
 Identities = 48/169 (28%), Positives = 77/169 (45%), Gaps = 12/169 (7%)

Query: 8   KCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVV-NGSTVNLGLWDTAGQED 66
           K V +G+ +VGKT L+  +  ++F   Y  T+  +F +  +     T+ L LWDTAGQE 
Sbjct: 2   KLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTIRLQLWDTAGQER 61

Query: 67  YNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLRDDK 126
           +  L P   R +   ++ + + +  S++  +K            V I+LVG K DL D +
Sbjct: 62  FRSLIPSYIRDSAAAVVVYDITNVNSFQQTTKWIDDVRTERGSDVIIMLVGNKTDLADKR 121

Query: 127 QFFIDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQQNVKAVFDAAIR 175
           Q  I+            E   K +    +IE S+K   NVK +F     
Sbjct: 122 QVSIEEG----------ERKAKELNVM-FIETSAKAGYNVKQLFRRVAA 159

>d1x3sa1 c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [TaxId: 9606]} Length = 177

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab18
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  117 bits (293), Expect = 5e-34
 Identities = 40/176 (22%), Positives = 81/176 (46%), Gaps = 12/176 (6%)

Query: 7   IKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVF-DNFSANVVVNGSTVNLGLWDTAGQE 65
           +K + +G+  VGK+ LL+ +T +TF  +   T+  D     + V+G+   L +WDTAGQE
Sbjct: 8   LKILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNKAKLAIWDTAGQE 67

Query: 66  DYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLRDD 125
            +  L P  YRGA   IL + +  + ++  +         +      + ++      +++
Sbjct: 68  RFRTLTPSYYRGAQGVILVYDVTRRDTFVKLDNWLNELETYCTRNDIVNMLVGNKIDKEN 127

Query: 126 KQFFIDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQQNVKAVFDAAIRVVLQPP 181
           ++          +   +G +  +      +IE S+KT   V+  F+  +  ++Q P
Sbjct: 128 RE----------VDRNEGLKFARKHSML-FIEASAKTCDGVQCAFEELVEKIIQTP 172

>d1wmsa_ c.37.1.8 (A:) Rab9a {Human (Homo sapiens) [TaxId: 9606]} Length = 174

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab9a
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  113 bits (283), Expect = 1e-32
 Identities = 59/182 (32%), Positives = 90/182 (49%), Gaps = 18/182 (9%)

Query: 4   SRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVV-VNGSTVNLGLWDTA 62
           S   K + +GDG VGK+ L+  Y +N F T    T+   F    + V+G  V + +WDTA
Sbjct: 4   SSLFKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTMQIWDTA 63

Query: 63  GQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYA-----PGVPIILVG 117
           GQE +  LR   YRG+D  +L FS+    S++N+   W  E  +YA        P +++G
Sbjct: 64  GQERFRSLRTPFYRGSDCCLLTFSVDDSQSFQNL-SNWKKEFIYYADVKEPESFPFVILG 122

Query: 118 TKLDLRDDKQFFIDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQQNVKAVFDAAIRVV 177
            K+D+ + +            ST + +   +  G   Y E S+K   NV A F+ A+R V
Sbjct: 123 NKIDISERQV-----------STEEAQAWCRDNGDYPYFETSAKDATNVAAAFEEAVRRV 171

Query: 178 LQ 179
           L 
Sbjct: 172 LA 173

>d1ctqa_ c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9606]} Length = 166

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: cH-p21 Ras protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  106 bits (266), Expect = 3e-30
 Identities = 58/174 (33%), Positives = 92/174 (52%), Gaps = 15/174 (8%)

Query: 8   KCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQEDY 67
           K V VG G VGK+ L I    N F  +Y PT+ D++   VV++G T  L + DTAGQE+Y
Sbjct: 5   KLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEY 64

Query: 68  NRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYA--PGVPIILVGTKLDLRDD 125
           + +R    R  + F+  F++ +  S+E++  ++  ++K       VP++LVG K DL   
Sbjct: 65  SAMRDQYMRTGEGFLCVFAINNTKSFEDI-HQYREQIKRVKDSDDVPMVLVGNKCDLAAR 123

Query: 126 KQFFIDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQQNVKAVFDAAIRVVLQ 179
                         + Q ++L +  G P YIE S+KT+Q V+  F   +R + Q
Sbjct: 124 TV-----------ESRQAQDLARSYGIP-YIETSAKTRQGVEDAFYTLVREIRQ 165

>d2fn4a1 c.37.1.8 (A:24-196) r-Ras {Human (Homo sapiens) [TaxId: 9606]} Length = 173

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: r-Ras
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  106 bits (265), Expect = 5e-30
 Identities = 52/177 (29%), Positives = 80/177 (45%), Gaps = 12/177 (6%)

Query: 4   SRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWDTAG 63
           S   K V VG G VGK+ L I +  + F +DY PT+ D+++    V+G    L + DTAG
Sbjct: 4   SETHKLVVVGGGGVGKSALTIQFIQSYFVSDYDPTIEDSYTKICSVDGIPARLDILDTAG 63

Query: 64  QEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYA-PGVPIILVGTKLDL 122
           QE++  +R    R    F+L F++  + S+  V K +   L+       P++LVG K DL
Sbjct: 64  QEEFGAMREQYMRAGHGFLLVFAINDRQSFNEVGKLFTQILRVKDRDDFPVVLVGNKADL 123

Query: 123 RDDKQFFIDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQQNVKAVFDAAIRVVLQ 179
              +Q                           Y E S+K + NV   F+  +R V +
Sbjct: 124 ESQRQVPRSEA----------SAFGASHHVA-YFEASAKLRLNVDEAFEQLVRAVRK 169

>d1r2qa_ c.37.1.8 (A:) Rab5a {Human (Homo sapiens) [TaxId: 9606]} Length = 170

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab5a
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  106 bits (265), Expect = 6e-30
 Identities = 44/173 (25%), Positives = 78/173 (45%), Gaps = 12/173 (6%)

Query: 8   KCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVF-DNFSANVVVNGSTVNLGLWDTAGQED 66
           K V +G+ AVGK+ L++ +    F      T+     +  V ++ +TV   +WDTAGQE 
Sbjct: 8   KLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQER 67

Query: 67  YNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLRDDK 126
           Y+ L P+ YRGA   I+ + + ++ S+           +  +P + I L G K DL + +
Sbjct: 68  YHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADLANKR 127

Query: 127 QFFIDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQQNVKAVFDAAIRVVLQ 179
                          + +          ++E S+KT  NV  +F A  + + +
Sbjct: 128 AV----------DFQEAQSYADDNSLL-FMETSAKTSMNVNEIFMAIAKKLPK 169

>d1u8za_ c.37.1.8 (A:) Ras-related protein RalA {Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]} Length = 168

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-related protein RalA
species: Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]

 Score =  106 bits (265), Expect = 6e-30
 Identities = 53/173 (30%), Positives = 83/173 (47%), Gaps = 14/173 (8%)

Query: 8   KCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQEDY 67
           K + VG G VGK+ L + +  + F  DY PT  D++   VV++G  V + + DTAGQEDY
Sbjct: 6   KVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEEVQIDILDTAGQEDY 65

Query: 68  NRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYA--PGVPIILVGTKLDLRDD 125
             +R   +R  + F+  FS I++      +  +  ++        VP +LVG K DL D 
Sbjct: 66  AAIRDNYFRSGEGFLCVFS-ITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDK 124

Query: 126 KQFFIDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQQNVKAVFDAAIRVVL 178
           +Q           S  + +          Y+E S+KT+ NV  VF   +R + 
Sbjct: 125 RQV----------SVEEAKNRADQWNVN-YVETSAKTRANVDKVFFDLMREIR 166

>d1z08a1 c.37.1.8 (A:17-183) Rab21 {Human (Homo sapiens) [TaxId: 9606]} Length = 167

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab21
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  105 bits (261), Expect = 2e-29
 Identities = 46/173 (26%), Positives = 85/173 (49%), Gaps = 12/173 (6%)

Query: 8   KCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSA-NVVVNGSTVNLGLWDTAGQED 66
           K V +G+G VGKT L++ Y  N F   ++ T+  +F    + + G  VNL +WDTAGQE 
Sbjct: 5   KVVLLGEGCVGKTSLVLRYCENKFNDKHITTLGASFLTKKLNIGGKRVNLAIWDTAGQER 64

Query: 67  YNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLRDDK 126
           ++ L P+ YR ++  IL + +  + S++ V        K     + + +VG K+DL  ++
Sbjct: 65  FHALGPIYYRDSNGAILVYDITDEDSFQKVKNWVKELRKMLGNEICLCIVGNKIDLEKER 124

Query: 127 QFFIDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQQNVKAVFDAAIRVVLQ 179
              I             E   + +GA  +   S+K  + ++ +F    + +++
Sbjct: 125 HVSIQEA----------ESYAESVGAK-HYHTSAKQNKGIEELFLDLCKRMIE 166

>d1c1ya_ c.37.1.8 (A:) Rap1A {Human (Homo sapiens) [TaxId: 9606]} Length = 167

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rap1A
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  105 bits (261), Expect = 2e-29
 Identities = 46/172 (26%), Positives = 79/172 (45%), Gaps = 11/172 (6%)

Query: 5   RFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQ 64
           R  K V +G G VGK+ L + +    F   Y PT+ D++   V V+     L + DTAG 
Sbjct: 2   REYKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDCQQCMLEILDTAGT 61

Query: 65  EDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYA-PGVPIILVGTKLDLR 123
           E +  +R L  +    F L +S+ +++++ ++       L+      VP+ILVG      
Sbjct: 62  EQFTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDTEDVPMILVGN----- 116

Query: 124 DDKQFFIDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQQNVKAVFDAAIR 175
                  D      +   QG+ L +     A++E S+K++ NV  +F   +R
Sbjct: 117 -----KCDLEDERVVGKEQGQNLARQWCNCAFLESSAKSKINVNEIFYDLVR 163

>d1ky3a_ c.37.1.8 (A:) Rab-related protein ypt7p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 175

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-related protein ypt7p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score =  104 bits (259), Expect = 4e-29
 Identities = 49/179 (27%), Positives = 79/179 (44%), Gaps = 15/179 (8%)

Query: 7   IKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVV--VNGSTVNLGLWDTAGQ 64
           +K + +GD  VGKT L+  Y ++ +   Y  T+  +F    V         + +WDTAGQ
Sbjct: 3   LKVIILGDSGVGKTSLMHRYVNDKYSQQYKATIGADFLTKEVTVDGDKVATMQVWDTAGQ 62

Query: 65  EDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYA----PGVPIILVGTKL 120
           E +  L    YRGAD  +L + + + +S+EN+       L H         P +++G K+
Sbjct: 63  ERFQSLGVAFYRGADCCVLVYDVTNASSFENIKSWRDEFLVHANVNSPETFPFVILGNKI 122

Query: 121 DLRDDKQFFIDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQQNVKAVFDAAIRVVLQ 179
           D  + K+   +            +EL K +G       S+K   NV   F+   R  LQ
Sbjct: 123 DAEESKKIVSEK---------SAQELAKSLGDIPLFLTSAKNAINVDTAFEEIARSALQ 172

>d2erya1 c.37.1.8 (A:10-180) r-Ras2 {Human (Homo sapiens) [TaxId: 9606]} Length = 171

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: r-Ras2
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  102 bits (254), Expect = 2e-28
 Identities = 54/179 (30%), Positives = 90/179 (50%), Gaps = 12/179 (6%)

Query: 2   SASRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWDT 61
           S     + V VG G VGK+ L I +  + F TDY PT+ D+++   V++     L + DT
Sbjct: 1   SMQEKYRLVVVGGGGVGKSALTIQFIQSYFVTDYDPTIEDSYTKQCVIDDRAARLDILDT 60

Query: 62  AGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELK-HYAPGVPIILVGTKL 120
           AGQE++  +R    R  + F+L FS+  + S+E + K     L+       P+IL+G K 
Sbjct: 61  AGQEEFGAMREQYMRTGEGFLLVFSVTDRGSFEEIYKFQRQILRVKDRDEFPMILIGNKA 120

Query: 121 DLRDDKQFFIDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQQNVKAVFDAAIRVVLQ 179
           DL   +Q           +  +G++L + +    Y+E S+K + NV   F   +RV+ +
Sbjct: 121 DLDHQRQV----------TQEEGQQLARQLKVT-YMEASAKIRMNVDQAFHELVRVIRK 168

>d1vg8a_ c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 184

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab7
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score =  101 bits (251), Expect = 7e-28
 Identities = 47/188 (25%), Positives = 79/188 (42%), Gaps = 16/188 (8%)

Query: 7   IKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFD-NFSANVVVNGSTVNLGLWDTAGQE 65
           +K + +GD  VGKT L+  Y +  F   Y  T+     +  V+V+   V + +WDTAGQE
Sbjct: 3   LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQE 62

Query: 66  DYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAP----GVPIILVGTKLD 121
            +  L    YRGAD  +L F + +  +++ +       L   +P      P +++G K+D
Sbjct: 63  RFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKID 122

Query: 122 LRDDKQFFIDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQQNVKAVFDAAIRVVLQPP 181
           L + +                 +          Y E S+K   NV+  F    R  L+  
Sbjct: 123 LENRQVATKR-----------AQAWCYSKNNIPYFETSAKEAINVEQAFQTIARNALKQE 171

Query: 182 KTKKKKNK 189
              +  N+
Sbjct: 172 TEVELYNE 179

>d1z0ja1 c.37.1.8 (A:2-168) Rab-22a {Mouse (Mus musculus) [TaxId: 10090]} Length = 167

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-22a
species: Mouse (Mus musculus) [TaxId: 10090]

 Score =  100 bits (249), Expect = 1e-27
 Identities = 40/174 (22%), Positives = 78/174 (44%), Gaps = 12/174 (6%)

Query: 3   ASRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLG-LWDT 61
           A R +K   +GD  VGK+ ++  +  ++F  +  PT+  +F    V   + ++   +WDT
Sbjct: 1   ALRELKVCLLGDTGVGKSSIMWRFVEDSFDPNINPTIGASFMTKTVQYQNELHKFLIWDT 60

Query: 62  AGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLD 121
           AG E +  L P+ YRG+   I+ + +  + ++  +        +H  P + + + G K D
Sbjct: 61  AGLERFRALAPMYYRGSAAAIIVYDITKEETFSTLKNWVRELRQHGPPSIVVAIAGNKCD 120

Query: 122 LRDDKQFFIDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQQNVKAVFDAAIR 175
           L D ++                ++    I A  ++E S+K   N+  +F    R
Sbjct: 121 LTDVREVMER----------DAKDYADSIHAI-FVETSAKNAININELFIEISR 163

>d2erxa1 c.37.1.8 (A:6-176) di-Ras2 {Human (Homo sapiens) [TaxId: 9606]} Length = 171

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: di-Ras2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 98.9 bits (245), Expect = 5e-27
 Identities = 46/175 (26%), Positives = 79/175 (45%), Gaps = 13/175 (7%)

Query: 7   IKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQED 66
            +    G G VGK+ L++ +   TF   Y+PTV D +   +  + S   L + DT G   
Sbjct: 3   YRVAVFGAGGVGKSSLVLRFVKGTFRESYIPTVEDTYRQVISCDKSICTLQITDTTGSHQ 62

Query: 67  YNRLRPLSYRGADVFILAFSLISKASYENVSKK--WIPELKHYAPGVPIILVGTKLDLRD 124
           +  ++ LS      FIL +S+ S+ S E +      I E+K     +PI+LVG K D   
Sbjct: 63  FPAMQRLSISKGHAFILVYSITSRQSLEELKPIYEQICEIKGDVESIPIMLVGNKCDESP 122

Query: 125 DKQFFIDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQQNVKAVFDAAIRVVLQ 179
            ++            +++ E L +      ++E S+K   NVK +F   + +  +
Sbjct: 123 SREV----------QSSEAEALARTWKCA-FMETSAKLNHNVKELFQELLNLEKR 166

>d1ek0a_ c.37.1.8 (A:) Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 170

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ypt51
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 98.6 bits (244), Expect = 7e-27
 Identities = 49/170 (28%), Positives = 79/170 (46%), Gaps = 9/170 (5%)

Query: 7   IKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNG-STVNLGLWDTAGQE 65
           IK V +G+ AVGK+ +++ + SN F  +  PT+   F    V     TV   +WDTAGQE
Sbjct: 4   IKLVLLGEAAVGKSSIVLRFVSNDFAENKEPTIGAAFLTQRVTINEHTVKFEIWDTAGQE 63

Query: 66  DYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLRDD 125
            +  L P+ YR A   ++ + +    S+           +  +  + I LVG K+D    
Sbjct: 64  RFASLAPMYYRNAQAALVVYDVTKPQSFIKARHWVKELHEQASKDIIIALVGNKID---- 119

Query: 126 KQFFIDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQQNVKAVFDAAIR 175
               +   G   ++  +GE+L +  G   + E S+KT +NV  VF     
Sbjct: 120 ---MLQEGGERKVAREEGEKLAEEKGLL-FFETSAKTGENVNDVFLGIGE 165

>d1x1ra1 c.37.1.8 (A:10-178) Ras-related protein M-Ras (XRas) {Mouse (Mus musculus) [TaxId: 10090]} Length = 169

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-related protein M-Ras (XRas)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 97.0 bits (240), Expect = 3e-26
 Identities = 56/174 (32%), Positives = 86/174 (49%), Gaps = 13/174 (7%)

Query: 8   KCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQEDY 67
           K V VGDG VGK+ L I +    F  DY PT+ D++  +  ++     L + DTAGQE++
Sbjct: 6   KLVVVGDGGVGKSALTIQFFQKIFVPDYDPTIEDSYLKHTEIDNQWAILDVLDTAGQEEF 65

Query: 68  NRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYA-PGVPIILVGTKLDLRDDK 126
           + +R    R  D F++ +S+  KAS+E+V +     L+       P+ILV  K+DL   +
Sbjct: 66  SAMREQYMRTGDGFLIVYSVTDKASFEHVDRFHQLILRVKDRESFPMILVANKVDLMHLR 125

Query: 127 QFFIDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQQ-NVKAVFDAAIRVVLQ 179
           +   D            +E+      P YIE S+K    NV   F   +RV+ Q
Sbjct: 126 KVTRDQG----------KEMATKYNIP-YIETSAKDPPLNVDKTFHDLVRVIRQ 168

>d1i2ma_ c.37.1.8 (A:) Ran {Human (Homo sapiens) [TaxId: 9606]} Length = 170

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ran
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 92.0 bits (227), Expect = 2e-24
 Identities = 45/176 (25%), Positives = 70/176 (39%), Gaps = 15/176 (8%)

Query: 8   KCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNF-SANVVVNGSTVNLGLWDTAGQED 66
           K V VGDG  GKT  +  + +  F   YV T+           N   +   +WDTAGQE 
Sbjct: 5   KLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQEK 64

Query: 67  YNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLRDDK 126
           +  LR   Y  A   I+ F  ++          W  +L      +PI+L G K+D++D K
Sbjct: 65  FGGLRDGYYIQAQCAIIMFD-VTSRVTYKNVPNWHRDLVRVCENIPIVLCGNKVDIKDRK 123

Query: 127 QFFIDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQQNVKAVFDAAIRVVLQPPK 182
                          + + L+       Y + S+K+  N +  F    R ++  P 
Sbjct: 124 VKAKSI------VFHRKKNLQ-------YYDISAKSNYNFEKPFLWLARKLIGDPN 166

>d2atva1 c.37.1.8 (A:5-172) Ras-like estrogen-regulated growth inhibitor, RERG {Human (Homo sapiens) [TaxId: 9606]} Length = 168

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-like estrogen-regulated growth inhibitor, RERG
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 90.5 bits (223), Expect = 1e-23
 Identities = 47/175 (26%), Positives = 80/175 (45%), Gaps = 14/175 (8%)

Query: 7   IKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQED 66
           +K    G   VGK+ L++ + +  F  +Y PT+   +     ++   V++ + DTAGQED
Sbjct: 3   VKLAIFGRAGVGKSALVVRFLTKRFIWEYDPTLESTYRHQATIDDEVVSMEILDTAGQED 62

Query: 67  YNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYA-PGVPIILVGTKLDLRDD 125
             + R    R  + F+L + +  + S+E V        +      V +ILVG K DL   
Sbjct: 63  TIQ-REGHMRWGEGFVLVYDITDRGSFEEVLPLKNILDEIKKPKNVTLILVGNKADLDHS 121

Query: 126 KQFFIDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQQ-NVKAVFDAAIRVVLQ 179
           +Q           ST +GE+L   +    + ECS+ T + N+  +F    R V +
Sbjct: 122 RQV----------STEEGEKLATELACA-FYECSACTGEGNITEIFYELCREVRR 165

>d1z2aa1 c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [TaxId: 10090]} Length = 164

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab23
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 89.0 bits (219), Expect = 3e-23
 Identities = 56/174 (32%), Positives = 76/174 (43%), Gaps = 13/174 (7%)

Query: 7   IKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTV-FDNFSANVVVNGSTVNLGLWDTAGQE 65
           IK V VG+GAVGK+ ++  Y    F  DY  T+  D     + VN   V L LWDTAGQE
Sbjct: 3   IKMVVVGNGAVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIQVNDEDVRLMLWDTAGQE 62

Query: 66  DYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLRDD 125
           +++ +    YRGA   +L FS   + S+E +   W  ++      +P  LV         
Sbjct: 63  EFDAITKAYYRGAQACVLVFSTTDRESFEAI-SSWREKVVAEVGDIPTALV--------- 112

Query: 126 KQFFIDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQQNVKAVFDAAIRVVLQ 179
            Q  ID      I   + E L K +    +   S K   NV  VF       LQ
Sbjct: 113 -QNKIDLLDDSCIKNEEAEGLAKRLKLR-FYRTSVKEDLNVSEVFKYLAEKHLQ 164

>d1z06a1 c.37.1.8 (A:32-196) Rab-33b {Mouse (Mus musculus) [TaxId: 10090]} Length = 165

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-33b
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 88.2 bits (217), Expect = 6e-23
 Identities = 47/172 (27%), Positives = 74/172 (43%), Gaps = 17/172 (9%)

Query: 5   RFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDN-FSANVVVNGSTVNLGLWDTAG 63
           R  K + +GD  VGKTCL   + +  FP     T+  +     V ++G  + + LWDTAG
Sbjct: 1   RIFKIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDIDGERIKIQLWDTAG 60

Query: 64  QEDYNRL-RPLSYRGADVFILAFSLISKASYENVSKKWIPELKHY-APGVPIILVGTKLD 121
           QE + +      YR     +  + + + AS+ ++        +H  A  +P ILVG K D
Sbjct: 61  QERFRKSMVQHYYRNVHAVVFVYDMTNMASFHSLPAWIEECKQHLLANDIPRILVGNKCD 120

Query: 122 LRDDKQFFIDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQQ---NVKAVF 170
           LR   Q   D            ++       P   E S+K      +V+A+F
Sbjct: 121 LRSAIQVPTD----------LAQKFADTHSMP-LFETSAKNPNDNDHVEAIF 161

>d1xtqa1 c.37.1.8 (A:3-169) GTP-binding protein RheB {Human (Homo sapiens) [TaxId: 9606]} Length = 167

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein RheB
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 87.1 bits (214), Expect = 2e-22
 Identities = 49/173 (28%), Positives = 79/173 (45%), Gaps = 12/173 (6%)

Query: 4   SRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWDTAG 63
           S+  K   +G  +VGK+ L I +    F   Y PT+ + F+  + VNG   +L L DTAG
Sbjct: 2   SKSRKIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTFTKLITVNGQEYHLQLVDTAG 61

Query: 64  QEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHY-APGVPIILVGTKLDL 122
           Q++Y+          + +IL +S+ S  S+E +       L       +PI+LVG K DL
Sbjct: 62  QDEYSIFPQTYSIDINGYILVYSVTSIKSFEVIKVIHGKLLDMVGKVQIPIMLVGNKKDL 121

Query: 123 RDDKQFFIDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQQNVKAVFDAAIR 175
             ++    +          +G+ L +   A  ++E S+K  Q    VF   I 
Sbjct: 122 HMERVISYE----------EGKALAESWNAA-FLESSAKENQTAVDVFRRIIL 163

>d1r8sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF1 [TaxId: 9606]} Length = 160

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARF1 [TaxId: 9606]

 Score = 86.2 bits (212), Expect = 3e-22
 Identities = 23/165 (13%), Positives = 49/165 (29%), Gaps = 11/165 (6%)

Query: 7   IKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQED 66
           ++ + VG  A GKT +L         T      F+  +    V    ++  +WD  GQ+ 
Sbjct: 1   MRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVET----VEYKNISFTVWDVGGQDK 56

Query: 67  YNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLRDDK 126
              L    ++     I       +       ++ +  L        ++       +  +K
Sbjct: 57  IRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVL------LVFANK 110

Query: 127 QFFIDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQQNVKAVFD 171
           Q   +   A  I+   G    +           + +   +    D
Sbjct: 111 QDLPNAMNAAEITDKLGLHSLRHRNWY-IQATCATSGDGLYEGLD 154

>d2bmja1 c.37.1.8 (A:66-240) Centaurin gamma 1, G domain {Human (Homo sapiens) [TaxId: 9606]} Length = 175

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Centaurin gamma 1, G domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 83.9 bits (206), Expect = 4e-21
 Identities = 37/182 (20%), Positives = 73/182 (40%), Gaps = 17/182 (9%)

Query: 7   IKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQED 66
           ++   +GD   GK+ L+  + + ++      T  + +   ++V+G T  + + + AG  D
Sbjct: 6   LRLGVLGDARSGKSSLIHRFLTGSYQ-VLEKTESEQYKKEMLVDGQTHLVLIREEAGAPD 64

Query: 67  YNRLRPLSYRGADVFILAFSLISKASYENVSK--KWIPELKHYAP-GVPIILVGTKLDLR 123
                      AD  I  FSL  + S++ VS+    +  L+     G+ + LVGT+  + 
Sbjct: 65  AKF-----SGWADAVIFVFSLEDENSFQAVSRLHGQLSSLRGEGRGGLALALVGTQDRIS 119

Query: 124 DDKQFFIDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQQNVKAVFDAAIRVVLQPPKT 183
                         +  A+   L   +   +Y E  +    NV  VF    + V+   K 
Sbjct: 120 ASSPRV--------VGDARARALCADMKRCSYYETCATYGLNVDRVFQEVAQKVVTLRKQ 171

Query: 184 KK 185
           ++
Sbjct: 172 QQ 173

>d1zj6a1 c.37.1.8 (A:2-178) ADP-ribosylation factor {Human (Homo sapiens), ARL5A [TaxId: 9606]} Length = 177

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL5A [TaxId: 9606]

 Score = 77.7 bits (190), Expect = 7e-19
 Identities = 24/170 (14%), Positives = 48/170 (28%), Gaps = 13/170 (7%)

Query: 7   IKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQED 66
            K + VG    GKT +L  ++ N           +       +  +     +WD  GQE 
Sbjct: 16  HKVIIVGLDNAGKTTILYQFSMNEVVHTSPTIGSNVEE----IVINNTRFLMWDIGGQES 71

Query: 67  YNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAP-GVPIILVGTKLDLRDD 125
                   Y   +  I+      +       ++    L H       +++   K D+++ 
Sbjct: 72  LRSSWNTYYTNTEFVIVVVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDVKEC 131

Query: 126 KQFFIDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQQNVKAVFDAAIR 175
                       IS        K         C + T + +    +  + 
Sbjct: 132 MT-------VAEISQFLKLTSIKDHQWH-IQACCALTGEGLCQGLEWMMS 173

>d1svsa1 c.37.1.8 (A:32-60,A:182-347) Transducin (alpha subunit) {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 195

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 78.1 bits (191), Expect = 1e-18
 Identities = 25/199 (12%), Positives = 53/199 (26%), Gaps = 34/199 (17%)

Query: 7   IKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQED 66
           +K + +G G  GK+ ++            +                 ++  ++D  GQ  
Sbjct: 3   VKLLLLGAGESGKSTIVKQMKIIHEAGTGIVETH--------FTFKDLHFKMFDVGGQRS 54

Query: 67  YNRLRPLSYRGADVFILAFSLISKASYENVS----------KKWIPELKHYA-PGVPIIL 115
             +     + G    I   +L                    K +     +       IIL
Sbjct: 55  ERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLFDSICNNKWFTDTSIIL 114

Query: 116 VGT-------KLDLRDDKQFFIDHPGAVPISTAQGEELRKLIGAPA--------YIECSS 160
                     K+        + ++ G+     A      +                   +
Sbjct: 115 FLNKKDLFEEKIKKSPLTICYPEYAGSNTYEEAAAYIQCQFEDLNKRKDTKEIYTHFTCA 174

Query: 161 KTQQNVKAVFDAAIRVVLQ 179
              +NV+ VFDA   V+++
Sbjct: 175 TDTKNVQFVFDAVTDVIIK 193

>d1e0sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF6 [TaxId: 9606]} Length = 173

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARF6 [TaxId: 9606]

 Score = 76.5 bits (187), Expect = 2e-18
 Identities = 26/168 (15%), Positives = 48/168 (28%), Gaps = 11/168 (6%)

Query: 4   SRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWDTAG 63
           ++ ++ + +G  A GKT +L         T      F+  +    V    V   +WD  G
Sbjct: 10  NKEMRILMLGLDAAGKTTILYKLKLGQSVTTIPTVGFNVET----VTYKNVKFNVWDVGG 65

Query: 64  QEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLR 123
           Q+    L    Y G    I       +   +   ++    +        IIL+       
Sbjct: 66  QDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFA----- 120

Query: 124 DDKQFFIDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQQNVKAVFD 171
            +KQ   D      I    G    +           + +   +     
Sbjct: 121 -NKQDLPDAMKPHEIQEKLGLTRIRDRNWY-VQPSCATSGDGLYEGLT 166

>d2g3ya1 c.37.1.8 (A:73-244) GTP-binding protein GEM {Human (Homo sapiens) [TaxId: 9606]} Length = 172

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein GEM
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 76.7 bits (187), Expect = 2e-18
 Identities = 34/179 (18%), Positives = 64/179 (35%), Gaps = 15/179 (8%)

Query: 5   RFIKCVTVGDGAVGKTCLLISYTSN--TFPTDYVPTVFDNFSANVVVNGSTVNLGLWDTA 62
            + + V +G+  VGK+ L   +     +  +D      D +   ++V+G +  + L D  
Sbjct: 2   TYYRVVLIGEQGVGKSTLANIFAGVHDSMDSDCEVLGEDTYERTLMVDGESATIILLDMW 61

Query: 63  GQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPE--LKHYAPGVPIILVGTKL 120
             +  N              L    I+  +    + +   +         +PIILVG   
Sbjct: 62  ENKGENEWLHDHCMQVGDAYLIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGN-- 119

Query: 121 DLRDDKQFFIDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQQNVKAVFDAAIRVVLQ 179
                     D      +S ++G     +     +IE S+  Q NVK +F+  +R V  
Sbjct: 120 --------KSDLVRCREVSVSEGRACAVVFDCK-FIETSAAVQHNVKELFEGIVRQVRL 169

>d1fzqa_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL3 [TaxId: 10090]} Length = 176

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Mouse (Mus musculus), ARL3 [TaxId: 10090]

 Score = 76.1 bits (186), Expect = 3e-18
 Identities = 30/170 (17%), Positives = 53/170 (31%), Gaps = 13/170 (7%)

Query: 7   IKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQED 66
           ++ + +G    GKT LL    S           F+  S    V      L +WD  GQ  
Sbjct: 17  VRILLLGLDNAGKTTLLKQLASEDISHITPTQGFNIKS----VQSQGFKLNVWDIGGQRK 72

Query: 67  YNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAP-GVPIILVGTKLDLRDD 125
                   +   D+ I       +  +E   ++    L+      VP+++   K DL   
Sbjct: 73  IRPYWRSYFENTDILIYVIDSADRKRFEETGQELTELLEEEKLSCVPVLIFANKQDLLTA 132

Query: 126 KQFFIDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQQNVKAVFDAAIR 175
                    A  I+        +         CS+ T + V+   +   +
Sbjct: 133 AP-------ASEIAEGLNLHTIRDRVWQ-IQSCSALTGEGVQDGMNWVCK 174

>d1moza_ c.37.1.8 (A:) ADP-ribosylation factor {Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]} Length = 182

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]

 Score = 74.2 bits (181), Expect = 2e-17
 Identities = 30/182 (16%), Positives = 54/182 (29%), Gaps = 19/182 (10%)

Query: 7   IKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQED 66
           ++ + +G    GKT +L         T   PT+  N      ++   + L +WD  GQ  
Sbjct: 18  LRILILGLDGAGKTTILYRLQIGEVVTTK-PTIGFNV---ETLSYKNLKLNVWDLGGQTS 73

Query: 67  YNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYA-PGVPIILVGTKLDLRDD 125
                   Y      I       K      SK+    L+        +++   K D    
Sbjct: 74  IRPYWRCYYADTAAVIFVVDSTDKDRMSTASKELHLMLQEEELQDAALLVFANKQDQ--- 130

Query: 126 KQFFIDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQQNVKAVFDAAIRVVLQPPKTKK 185
                    A  +S        K       +  S+   + +    D  I V+      K+
Sbjct: 131 ----PGALSASEVSKELNLVELKDRSWS-IVASSAIKGEGITEGLDWLIDVI------KE 179

Query: 186 KK 187
           ++
Sbjct: 180 EQ 181

>d2bcjq2 c.37.1.8 (Q:38-66,Q:184-354) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]} Length = 200

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 75.0 bits (183), Expect = 2e-17
 Identities = 29/199 (14%), Positives = 55/199 (27%), Gaps = 31/199 (15%)

Query: 7   IKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQED 66
           +K + +G G  GK+  +            VPT           +  +V   + D  GQ  
Sbjct: 3   LKLLLLGTGESGKSTFIKQMRIIHG--SGVPTTGIIE---YPFDLQSVIFRMVDVGGQRS 57

Query: 67  YNRLRPLSYRGADVFILAFSLISKASYENVS----------KKWIPELKHYA-PGVPIIL 115
             R     +      +   +L         S            +   + +       +IL
Sbjct: 58  ERRKWIHCFENVTSIMFLVALSEYDQVLVESDNENRMEESKALFRTIITYPWFQNSSVIL 117

Query: 116 VGT-------KLDLRDDKQFFIDHPGAVPISTA-------QGEELRKLIGAPAYI-ECSS 160
                     K+       +F ++ G    + A          +L        Y     +
Sbjct: 118 FLNKKDLLEEKIMYSHLVDYFPEYDGPQRDAQAAREFILKMFVDLNPDSDKIIYSHFTCA 177

Query: 161 KTQQNVKAVFDAAIRVVLQ 179
              +N++ VF A    +LQ
Sbjct: 178 TDTENIRFVFAAVKDTILQ 196

>d2qtvb1 c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 166

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: SAR1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 72.4 bits (176), Expect = 7e-17
 Identities = 19/164 (11%), Positives = 41/164 (25%), Gaps = 4/164 (2%)

Query: 8   KCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQEDY 67
           K + +G    GKT LL    ++   T   PT          +    +    +D  G    
Sbjct: 2   KLLFLGLDNAGKTTLLHMLKNDRLAT-LQPTWHPTS---EELAIGNIKFTTFDLGGHIQA 57

Query: 68  NRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLRDDKQ 127
            RL    +   +  +          ++    +               ++        +  
Sbjct: 58  RRLWKDYFPEVNGIVFLVDAADPERFDEARVELDALFNIAELKDVPFVILGNKIDAPNAV 117

Query: 128 FFIDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQQNVKAVFD 171
              +   A+ +    G +  +         CS   +      F 
Sbjct: 118 SEAELRSALGLLNTTGSQRIEGQRPVEVFMCSVVMRNGYLEAFQ 161

>d1zd9a1 c.37.1.8 (A:18-181) ADP-ribosylation factor {Human (Homo sapiens), ARL8A [TaxId: 9606]} Length = 164

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL8A [TaxId: 9606]

 Score = 72.0 bits (175), Expect = 9e-17
 Identities = 32/170 (18%), Positives = 53/170 (31%), Gaps = 12/170 (7%)

Query: 7   IKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQED 66
           ++   VG    GKT  +    S  F  D +PTV  N      +    V + LWD  GQ  
Sbjct: 3   MELTLVGLQYSGKTTFVNVIASGQFNEDMIPTVGFNM---RKITKGNVTIKLWDIGGQPR 59

Query: 67  YNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAP-GVPIILVGTKLDLRDD 125
           +  +     RG    +       +   E    +    L      G+P++++G K DL   
Sbjct: 60  FRSMWERYCRGVSAIVYMVDAADQEKIEASKNELHNLLDKPQLQGIPVLVLGNKRDL--- 116

Query: 126 KQFFIDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQQNVKAVFDAAIR 175
                       +         +          S K + N+       I+
Sbjct: 117 ----PGALDEKELIEKMNLSAIQDREIC-CYSISCKEKDNIDITLQWLIQ 161

>d2gjsa1 c.37.1.8 (A:91-258) Rad {Human (Homo sapiens) [TaxId: 9606]} Length = 168

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rad
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 70.9 bits (172), Expect = 2e-16
 Identities = 40/183 (21%), Positives = 76/183 (41%), Gaps = 18/183 (9%)

Query: 8   KCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQEDY 67
           K + +G   VGK+ L   +                +  ++VV+G   +L ++D   Q+  
Sbjct: 3   KVLLLGAPGVGKSALARIFGGVED-GPEAEAAGHTYDRSIVVDGEEASLMVYDIWEQDGG 61

Query: 68  NRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPG-VPIILVGTKLDLRDDK 126
             L        D +++ +S+  K S+E  S+  +   +      VPIILVG K DL   +
Sbjct: 62  RWLPGHCMAMGDAYVIVYSVTDKGSFEKASELRVQLRRARQTDDVPIILVGNKSDLVRSR 121

Query: 127 QFFIDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQQNVKAVFDAAIRVVLQPPKTKKK 186
           +  +D          +G     +     +IE S+    NV+A+F+  +R +       ++
Sbjct: 122 EVSVD----------EGRACAVVFDCK-FIETSAALHHNVQALFEGVVRQIR-----LRR 165

Query: 187 KNK 189
            +K
Sbjct: 166 DSK 168

>d1upta_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARL1 [TaxId: 9606]} Length = 169

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL1 [TaxId: 9606]

 Score = 69.7 bits (169), Expect = 6e-16
 Identities = 22/185 (11%), Positives = 51/185 (27%), Gaps = 19/185 (10%)

Query: 4   SRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWDTAG 63
           +R ++ + +G    GKT +L         T    T+         V    +   +WD  G
Sbjct: 3   TREMRILILGLDGAGKTTILYRLQVGEVVT----TIPTIGFNVETVTYKNLKFQVWDLGG 58

Query: 64  QEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYA-PGVPIILVGTKLDL 122
                      Y   D  I       +        + +  L+        +++   K D+
Sbjct: 59  LTSIRPYWRCYYSNTDAVIYVVDSCDRDRIGISKSELVAMLEEEELRKAILVVFANKQDM 118

Query: 123 RDDKQFFIDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQQNVKAVFDAAIRVVLQPPK 182
                       +  ++ + G    K        + S+     +    +  +  +     
Sbjct: 119 EQAMT-------SSEMANSLGLPALKDRKWQ-IFKTSATKGTGLDEAMEWLVETL----- 165

Query: 183 TKKKK 187
            K ++
Sbjct: 166 -KSRQ 169

>d1f6ba_ c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: 10029]} Length = 186

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: SAR1
species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]

 Score = 70.1 bits (170), Expect = 8e-16
 Identities = 26/170 (15%), Positives = 50/170 (29%), Gaps = 9/170 (5%)

Query: 7   IKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQED 66
            K V +G    GKT LL     +            +      +  + +    +D  G   
Sbjct: 14  GKLVFLGLDNAGKTTLLHMLKDDRLGQHVPTLHPTSEE----LTIAGMTFTTFDLGGHIQ 69

Query: 67  YNRLRPLSYRGADVFILAFSLISKASYENVSKKWI-PELKHYAPGVPIILVGTKLDLRD- 124
             R+        +  +               ++            VPI+++G K+D  + 
Sbjct: 70  ARRVWKNYLPAINGIVFLVDCADHERLLESKEELDSLMTDETIANVPILILGNKIDRPEA 129

Query: 125 -DKQFFIDHPGAVPISTAQGEELRKLIGAPA--YIECSSKTQQNVKAVFD 171
             ++   +  G    +T +G    K + A       CS   +Q     F 
Sbjct: 130 ISEERLREMFGLYGQTTGKGSVSLKELNARPLEVFMCSVLKRQGYGEGFR 179

>d1ksha_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL2 [TaxId: 10090]} Length = 165

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Mouse (Mus musculus), ARL2 [TaxId: 10090]

 Score = 67.8 bits (164), Expect = 4e-15
 Identities = 26/170 (15%), Positives = 53/170 (31%), Gaps = 13/170 (7%)

Query: 7   IKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQED 66
           ++ + +G    GKT +L  +      T   PT+  N               +WD  GQ+ 
Sbjct: 3   LRLLMLGLDNAGKTTILKKFNGEDVDT-ISPTLGFNIKTLEHRGFKLN---IWDVGGQKS 58

Query: 67  YNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHY-APGVPIILVGTKLDLRDD 125
                   +   D  I       +   ++  ++    L      G  +++   K DL   
Sbjct: 59  LRSYWRNYFESTDGLIWVVDSADRQRMQDCQRELQSLLVEERLAGATLLIFANKQDLPGA 118

Query: 126 KQFFIDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQQNVKAVFDAAIR 175
                    A+ + + +    R          CS+ T +++    D  + 
Sbjct: 119 LS-CNAIQEALELDSIRSHHWR-------IQGCSAVTGEDLLPGIDWLLD 160

>d1zcba2 c.37.1.8 (A:47-75,A:202-372) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]} Length = 200

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 63.8 bits (154), Expect = 2e-13
 Identities = 27/202 (13%), Positives = 53/202 (26%), Gaps = 33/202 (16%)

Query: 5   RFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQ 64
           R +K + +G G  GK+  L             PT   +           V   + D  GQ
Sbjct: 1   RLVKILLLGAGESGKSTFLKQM---RIIHGQDPTKGIHE---YDFEIKNVPFKMVDVGGQ 54

Query: 65  EDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYA-----------PGVPI 113
               +     +      +   S           ++     +                V I
Sbjct: 55  RSERKRWFECFDSVTSILFLVSSSEFDQVLMEDRQTNRLTESLNIFETIVNNRVFSNVSI 114

Query: 114 ILVGT-------KLDLRDDKQFFIDHPGAVPISTAQGEELRKLIGAPA---------YIE 157
           IL          K+ +   K +F++  G         + L +               +  
Sbjct: 115 ILFLNKTDLLEEKVQVVSIKDYFLEFEGDPHCLRDVQKFLVECFRGKRRDQQQRPLYHHF 174

Query: 158 CSSKTQQNVKAVFDAAIRVVLQ 179
            ++   +N++ VF      +L 
Sbjct: 175 TTAINTENIRLVFRDVKDTILH 196

>d2fh5b1 c.37.1.8 (B:63-269) Signal recognition particle receptor beta-subunit {Mouse (Mus musculus) [TaxId: 10090]} Length = 207

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Signal recognition particle receptor beta-subunit
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 52.3 bits (124), Expect = 4e-09
 Identities = 19/122 (15%), Positives = 42/122 (34%), Gaps = 6/122 (4%)

Query: 10  VTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQEDYNR 69
           + VG    GKT L +   +  +  D   ++ D+ +   V N    +L L D  G E    
Sbjct: 4   LFVGLCDSGKTLLFVRLLTGQY-RDTQTSITDSSAIYKVNNNRGNSLTLIDLPGHESLRF 62

Query: 70  LRPLSY-RGADVFILAFSLISKASYENVSKKWIPELKHYAPGV----PIILVGTKLDLRD 124
                +   A   +      +         +++ ++   +  +     +++   K D+  
Sbjct: 63  QLLDRFKSSARAVVFVVDSAAFQREVKDVAEFLYQVLIDSMALKNSPSLLIACNKQDIAM 122

Query: 125 DK 126
            K
Sbjct: 123 AK 124

>d1azta2 c.37.1.8 (A:35-65,A:202-391) Transducin (alpha subunit) {Cow (Bos taurus) [TaxId: 9913]} Length = 221

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 46.7 bits (110), Expect = 4e-07
 Identities = 21/130 (16%), Positives = 37/130 (28%), Gaps = 18/130 (13%)

Query: 8   KCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQEDY 67
           + + +G G  GK+ ++            V T               VN  ++D  GQ D 
Sbjct: 8   RLLLLGAGESGKSTIVKQMRILHV----VLTSGIFE---TKFQVDKVNFHMFDVGGQRDE 60

Query: 68  NRLRPLSYRGADVFILAFSLISKASYENVSKK----------WIPELKHYAP-GVPIILV 116
            R     +      I   +  S         +          +     +     + +IL 
Sbjct: 61  RRKWIQCFNDVTAIIFVVASSSYNMVIREDNQTNRLQEALNLFKSIWNNRWLRTISVILF 120

Query: 117 GTKLDLRDDK 126
             K DL  +K
Sbjct: 121 LNKQDLLAEK 130

>d2gj8a1 c.37.1.8 (A:216-376) Probable tRNA modification GTPase TrmE (MnmE), G domain {Escherichia coli [TaxId: 562]} Length = 161

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable tRNA modification GTPase TrmE (MnmE), G domain
species: Escherichia coli [TaxId: 562]

 Score = 36.6 bits (83), Expect = 5e-04
 Identities = 23/156 (14%), Positives = 46/156 (29%), Gaps = 12/156 (7%)

Query: 7   IKCVTVGDGAVGKTCLL-------ISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLW 59
           +K V  G    GK+ LL        +  ++   T             + ++         
Sbjct: 2   MKVVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLRE 61

Query: 60  DTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTK 119
            +   E     R          +L     +     + ++ W   +      +PI +V  K
Sbjct: 62  ASDEVERIGIERAWQEIEQADRVLFMVDGTTTDAVDPAEIWPEFIARLPAKLPITVVRNK 121

Query: 120 LDLRDDKQFFIDHPGA--VPISTAQGE---ELRKLI 150
            D+  +     +  G   + +S   GE    LR  +
Sbjct: 122 ADITGETLGMSEVNGHALIRLSARTGEGVDVLRNHL 157

>d1mkya2 c.37.1.8 (A:173-358) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]} Length = 186

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase Der, N-terminal and middle domains
species: Thermotoga maritima [TaxId: 2336]

 Score = 35.0 bits (79), Expect = 0.003
 Identities = 33/182 (18%), Positives = 52/182 (28%), Gaps = 22/182 (12%)

Query: 7   IKCVTVGDGAVGKTCLL-------ISYTSNT-----FPTDYVPTVFDNFSANVVVNGSTV 54
           IK   VG   VGK+ L         +  S        P D    +       V   G   
Sbjct: 9   IKVAIVGRPNVGKSTLFNAILNKERALVSPIPGTTRDPVDDEVFIDGRKYVFVDTAGLRR 68

Query: 55  NLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPII 114
              +     ++  N     S   ADV +    L +        ++    ++    G   +
Sbjct: 69  KSRVEPRTVEKYSNYRVVDSIEKADVVV--IVLDATQGITRQDQRMAGLMERR--GRASV 124

Query: 115 LVGTKLDLRDDKQFFIDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQQNVKAVFDAAI 174
           +V  K DL   ++   D        T    E    I     I  S+    N+  + DA  
Sbjct: 125 VVFNKWDLVVHREKRYDEF------TKLFREKLYFIDYSPLIFTSADKGWNIDRMIDAMN 178

Query: 175 RV 176
             
Sbjct: 179 LA 180

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	197
d2ngra_	191	CDC42 {Human (Homo sapiens) [TaxId: 9606]}	100.0
d2atxa1	185	RhoQ {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1kmqa_	177	RhoA {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1xtqa1	167	GTP-binding protein RheB {Human (Homo sapiens) [Ta	100.0
d2fn4a1	173	r-Ras {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1mh1a_	183	Rac {Human (Homo sapiens) [TaxId: 9606]}	100.0
d2gjsa1	168	Rad {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1z2aa1	164	Rab23 {Mouse (Mus musculus) [TaxId: 10090]}	100.0
d1u8za_	168	Ras-related protein RalA {Cotton-top tamarin (Sagu	100.0
d1x1ra1	169	Ras-related protein M-Ras (XRas) {Mouse (Mus muscu	100.0
d1z08a1	167	Rab21 {Human (Homo sapiens) [TaxId: 9606]}	100.0
d2erxa1	171	di-Ras2 {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1m7ba_	179	RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]}	100.0
d3raba_	169	Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]}	100.0
d2erya1	171	r-Ras2 {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1kaoa_	167	Rap2a {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1c1ya_	167	Rap1A {Human (Homo sapiens) [TaxId: 9606]}	100.0
d2ew1a1	171	Rab30 {Human (Homo sapiens) [TaxId: 9606]}	100.0
d2atva1	168	Ras-like estrogen-regulated growth inhibitor, RERG	100.0
d1z0ja1	167	Rab-22a {Mouse (Mus musculus) [TaxId: 10090]}	100.0
d1z0fa1	166	Rab14 {Human (Homo sapiens) [TaxId: 9606]}	100.0
d2bcgy1	194	GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisi	100.0
d1ctqa_	166	cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9	100.0
d1yzqa1	164	Rab6 {Human (Homo sapiens) [TaxId: 9606]}	100.0
d2bmea1	174	Rab4a {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1i2ma_	170	Ran {Human (Homo sapiens) [TaxId: 9606]}	100.0
d2a5ja1	173	Rab2b {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1r2qa_	170	Rab5a {Human (Homo sapiens) [TaxId: 9606]}	100.0
d2fu5c1	173	Rab8a {Mouse (Mus musculus) [TaxId: 10090]}	100.0
d2g6ba1	170	Rab26 {Human (Homo sapiens) [TaxId: 9606]}	100.0
d2f9la1	175	Rab11b {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1ek0a_	170	Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [T	100.0
d1ky3a_	175	Rab-related protein ypt7p {Baker's yeast (Saccharo	100.0
d1x3sa1	177	Rab18 {Human (Homo sapiens) [TaxId: 9606]}	100.0
d2g3ya1	172	GTP-binding protein GEM {Human (Homo sapiens) [Tax	100.0
d1g16a_	166	Rab-related protein Sec4 {Baker's yeast (Saccharom	100.0
d2f7sa1	186	Rab27b {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1wmsa_	174	Rab9a {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1z06a1	165	Rab-33b {Mouse (Mus musculus) [TaxId: 10090]}	100.0
d1vg8a_	184	Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]}	100.0
d2bmja1	175	Centaurin gamma 1, G domain {Human (Homo sapiens)	100.0
d1zd9a1	164	ADP-ribosylation factor {Human (Homo sapiens), ARL	100.0
d1ksha_	165	ADP-ribosylation factor {Mouse (Mus musculus), ARL	99.98
d1fzqa_	176	ADP-ribosylation factor {Mouse (Mus musculus), ARL	99.97
d1moza_	182	ADP-ribosylation factor {Baker's yeast (Saccharomy	99.97
d1e0sa_	173	ADP-ribosylation factor {Human (Homo sapiens), ARF	99.97
d1r8sa_	160	ADP-ribosylation factor {Human (Homo sapiens), ARF	99.96
d1wf3a1	178	GTPase Era, N-terminal domain {Thermus thermophilu	99.95
d1upta_	169	ADP-ribosylation factor {Human (Homo sapiens), ARL	99.95
d1zj6a1	177	ADP-ribosylation factor {Human (Homo sapiens), ARL	99.95
d1svsa1	195	Transducin (alpha subunit) {Rat (Rattus norvegicus	99.94
d2bcjq2	200	Transducin (alpha subunit) {Mouse (Mus musculus) [	99.93
d2gj8a1	161	Probable tRNA modification GTPase TrmE (MnmE), G d	99.93
d1f6ba_	186	SAR1 {Chinese hamster (Cricetulus griseus) [TaxId:	99.93
d2qtvb1	166	SAR1 {Baker's yeast (Saccharomyces cerevisiae) [Ta	99.92
d1udxa2	180	Obg GTP-binding protein middle domain {Thermus the	99.92
d1zcba2	200	Transducin (alpha subunit) {Mouse (Mus musculus) [	99.92
d1mkya1	171	Probable GTPase Der, N-terminal and middle domains	99.91
d1mkya2	186	Probable GTPase Der, N-terminal and middle domains	99.9
d1wb1a4	179	Elongation factor SelB, N-terminal domain {Methano	99.9
d1xzpa2	160	TrmE GTPase domain {Thermotoga maritima [TaxId: 23	99.89
d1g7sa4	227	Initiation factor IF2/eIF5b, N-terminal (G) domain	99.89
d2cxxa1	184	GTP-binding protein engB {Pyrococcus horikoshii [T	99.88
d2fh5b1	207	Signal recognition particle receptor beta-subunit	99.88
d1azta2	221	Transducin (alpha subunit) {Cow (Bos taurus) [TaxI	99.87
d1svia_	195	Probable GTPase EngB {Bacillus subtilis [TaxId: 14	99.87
d1kk1a3	195	Initiation factor eIF2 gamma subunit, N-terminal (	99.86
d2qn6a3	205	Initiation factor eIF2 gamma subunit, N-terminal (	99.86
d1lnza2	185	Obg GTP-binding protein middle domain {Bacillus su	99.85
d1d2ea3	196	Elongation factor Tu (EF-Tu), N-terminal (G) domai	99.84
d1egaa1	179	GTPase Era, N-terminal domain {Escherichia coli [T	99.83
d2c78a3	204	Elongation factor Tu (EF-Tu), N-terminal (G) domai	99.81
d1zunb3	222	Sulfate adenylate transferase subunit cysN/C, EF-T	99.79
d1puia_	188	Probable GTPase EngB {Escherichia coli [TaxId: 562	99.75
d1nrjb_	209	Signal recognition particle receptor beta-subunit	99.73
d1r5ba3	245	Eukaryotic peptide chain release factor ERF2, G do	99.72
d1f60a3	239	Elongation factor eEF-1alpha, N-terminal (G) domai	99.7
d2dy1a2	267	Elongation factor G (EF-G), N-terminal (G) domain	99.67
d1jnya3	224	Elongation factor eEF-1alpha, N-terminal (G) domai	99.67
d2bv3a2	276	Elongation factor G (EF-G), N-terminal (G) domain	99.63
d1tq4a_	400	Interferon-inducible GTPase {Mouse (Mus musculus)	99.59
d1n0ua2	341	Elongation factor 2 (eEF-2), N-terminal (G) domain	99.58
d1h65a_	257	Chloroplast protein translocon GTPase Toc34 {Garde	99.55
d1yrba1	244	ATP(GTP)-binding protein PAB0955 {Pyrococcus abyss	99.48
d2qm8a1	323	Metallochaperone MeaB {Methylobacterium extorquens	99.26
d2p67a1	327	LAO/AO transport system kinase ArgK {Escherichia c	99.24
d2akab1	299	Dynamin G domain {Rat (Rattus norvegicus) [TaxId:	99.08
d1jala1	278	YchF GTP-binding protein N-terminal domain {Haemop	99.0
d1jwyb_	306	Dynamin G domain {Dictyostelium discoideum [TaxId:	98.94
d1wxqa1	319	GTP-binding protein PH0525 {Pyrococcus horikoshii	98.93
d1ni3a1	296	YchF GTP-binding protein N-terminal domain {Fissio	98.88
d1puja_	273	Probable GTPase YlqF {Bacillus subtilis [TaxId: 14	98.57
d1u0la2	225	Probable GTPase EngC (YjeQ), C-terminal domain {Th	98.54
d1u0la2	225	Probable GTPase EngC (YjeQ), C-terminal domain {Th	98.49
d1t9ha2	231	Probable GTPase EngC (YjeQ), C-terminal domain {Ba	98.33
d1t9ha2	231	Probable GTPase EngC (YjeQ), C-terminal domain {Ba	98.2
d1puja_	273	Probable GTPase YlqF {Bacillus subtilis [TaxId: 14	98.2
d1nija1	222	Hypothetical protein YjiA, N-terminal domain {Esch	98.03
d1qf9a_	194	UMP/CMP kinase {Dictyostelium discoideum [TaxId: 4	98.0
d1ye8a1	178	Hypothetical kinase-like protein Aq_1292 {Aquifex	97.98
d1y63a_	174	Probable kinase LmjF30.1890 {Leishmania major [Tax	97.87
d1lw7a2	192	Transcriptional regulator NadR, ribosylnicotinamid	97.8
d2ak3a1	189	Adenylate kinase {Cow (Bos taurus), mitochondrial	97.76
d1rkba_	173	Adenylate kinase {Human (Homo sapiens), isoenzyme	97.75
d1zaka1	189	Adenylate kinase {Maize (Zea mays) [TaxId: 4577]}	97.72
d1ak2a1	190	Adenylate kinase {Cow (Bos taurus), mitochondrial	97.72
d1np6a_	170	Molybdopterin-guanine dinucleotide biosynthesis pr	97.68
d1zina1	182	Adenylate kinase {Bacillus stearothermophilus [Tax	97.68
d2cdna1	181	Adenylate kinase {Mycobacterium tuberculosis [TaxI	97.62
d1s3ga1	182	Adenylate kinase {Bacillus globisporus [TaxId: 145	97.59
d1ly1a_	152	Polynucleotide kinase, kinase domain {Bacteriophag	97.58
d1e4va1	179	Adenylate kinase {Escherichia coli [TaxId: 562]}	97.55
d1ukza_	196	Uridylate kinase {Baker's yeast (Saccharomyces cer	97.53
d1yj5a2	172	5' polynucleotide kinase-3' phosphatase, C-termina	97.53
d1akya1	180	Adenylate kinase {Baker's yeast (Saccharomyces cer	97.5
d2bdta1	176	Hypothetical protein BH3686 {Bacillus halodurans [	97.44
d1kaga_	169	Shikimate kinase (AroK) {Escherichia coli [TaxId:	97.42
d1f5na2	277	Interferon-induced guanylate-binding protein 1 (GB	97.42
d1xjca_	165	Molybdopterin-guanine dinucleotide biosynthesis pr	97.4
d2iyva1	165	Shikimate kinase (AroK) {Mycobacterium tuberculosi	97.36
d1gkya_	186	Guanylate kinase {Baker's yeast (Saccharomyces cer	97.35
d2i3ba1	189	Cancer-related NTPase, C1orf57 {Human (Homo sapien	97.35
d1teva_	194	UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606]	97.34
d1kgda_	178	Guanylate kinase-like domain of Cask {Human (Homo	97.31
d1znwa1	182	Guanylate kinase {Mycobacterium tuberculosis [TaxI	97.31
d2pmka1	241	Haemolysin B ATP-binding protein {Escherichia coli	97.31
d1bifa1	213	6-phosphofructo-2-kinase/fructose-2,6-bisphosphata	97.29
d1viaa_	161	Shikimate kinase (AroK) {Campylobacter jejuni [Tax	97.25
d1lvga_	190	Guanylate kinase {Mouse (Mus musculus) [TaxId: 100	97.24
d1khta_	190	Adenylate kinase {Archaeon Methanococcus voltae [T	97.23
d2vp4a1	197	Deoxyribonucleoside kinase {Fruit fly (Drosophila	97.2
d1s96a_	205	Guanylate kinase {Escherichia coli [TaxId: 562]}	97.2
d1m8pa3	183	ATP sulfurylase C-terminal domain {Fungus (Penicil	97.19
d1sxje2	252	Replication factor C5 {Baker's yeast (Saccharomyce	97.19
d1rz3a_	198	Hypothetical protein rbstp0775 {Bacillus stearothe	97.19
d1e6ca_	170	Shikimate kinase (AroK) {Erwinia chrysanthemi [Tax	97.19
d1mv5a_	242	Multidrug resistance ABC transporter LmrA, C-termi	97.17
d3b60a1	253	Multidrug resistance ABC transporter MsbA, C-termi	97.16
d1jj7a_	251	Peptide transporter Tap1, C-terminal ABC domain {H	97.16
d1knqa_	171	Gluconate kinase {Escherichia coli [TaxId: 562]}	97.13
d1zp6a1	176	Hypothetical protein Atu3015 {Agrobacterium tumefa	97.13
d2awna2	232	Maltose transport protein MalK, N-terminal domain	97.1
d1l2ta_	230	MJ0796 {Archaeon Methanococcus jannaschii [TaxId:	97.1
d1g6oa_	323	Hexameric traffic ATPase, HP0525 {Helicobacter pyl	97.07
d1sgwa_	200	Putative ABC transporter PF0895 {Pyrococcus furios	97.07
d1qhxa_	178	Chloramphenicol phosphotransferase {Streptomyces v	97.07
d1r0wa_	281	Cystic fibrosis transmembrane conductance regulato	97.04
d2onka1	240	Molybdate/tungstate import ATP-binding protein Wtp	97.03
d1vmaa2	213	GTPase domain of the signal recognition particle r	97.02
d1v43a3	239	Hypothetical protein PH0022, N-terminal domain {Py	97.0
d3adka_	194	Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]}	96.99
d1q3ta_	223	CMP kinase {Streptococcus pneumoniae [TaxId: 1313]	96.98
d1jbka_	195	ClpB, AAA+ modules {Escherichia coli [TaxId: 562]}	96.97
d2hyda1	255	Putative multidrug export ATP-binding/permease pro	96.96
d1gvnb_	273	Plasmid maintenance system epsilon/zeta, toxin zet	96.96
d1j8yf2	211	GTPase domain of the signal sequence recognition p	96.95
d3dhwc1	240	Methionine import ATP-binding protein MetN {Escher	96.95
d1g2912	240	Maltose transport protein MalK, N-terminal domain	96.95
d1htwa_	158	Hypothetical protein HI0065 {Haemophilus influenza	96.93
d3d31a2	229	Sulfate/molybdate ABC transporter, ATP-binding pro	96.92
d1x6va3	195	Adenosine-5'phosphosulfate kinase (APS kinase) {Hu	96.88
d1nksa_	194	Adenylate kinase {Archaeon Sulfolobus acidocaldari	96.88
d1ixsb2	239	Holliday junction helicase RuvB {Thermus thermophi	96.85
d1r6bx2	268	ClpA, an Hsp100 chaperone, AAA+ modules {Escherich	96.84
d2qy9a2	211	GTPase domain of the signal recognition particle r	96.83
d1ji0a_	240	Branched chain aminoacid ABC transporter {Thermoto	96.83
d1l7vc_	231	ABC transporter involved in vitamin B12 uptake, Bt	96.83
d1uj2a_	213	Uridine-cytidine kinase 2 {Human (Homo sapiens) [T	96.82
d1in4a2	238	Holliday junction helicase RuvB {Thermotoga mariti	96.8
d1b0ua_	258	ATP-binding subunit of the histidine permease {Sal	96.79
d1m7ga_	208	Adenosine-5'phosphosulfate kinase (APS kinase) {Fu	96.74
d1oxxk2	242	Glucose transport protein GlcV, N-terminal domain	96.71
d1vpla_	238	Putative ABC transporter TM0544 {Thermotoga mariti	96.69
d1g6ha_	254	MJ1267 {Archaeon Methanococcus jannaschii [TaxId:	96.66
d1fnna2	276	CDC6, N-domain {Archaeon Pyrobaculum aerophilum [T	96.62
d1iqpa2	231	Replication factor C {Archaeon Pyrococcus furiosus	96.61
d1d2na_	246	Hexamerization domain of N-ethylmalemide-sensitive	96.55
d2fnaa2	283	Archaeal ATPase SSO1545 {Sulfolobus solfataricus [	96.54
d1okkd2	207	GTPase domain of the signal recognition particle r	96.54
d1uf9a_	191	Dephospho-CoA kinase {Thermus thermophilus [TaxId:	96.52
d1ofha_	309	HslU {Haemophilus influenzae [TaxId: 727]}	96.52
d1gsia_	208	Thymidylate kinase {Mycobacterium tuberculosis [Ta	96.47
d1sxja2	253	Replication factor C1 {Baker's yeast (Saccharomyce	96.46
d1w5sa2	287	CDC6-like protein APE0152, N-terminal domain {Aero	96.45
d1ckea_	225	CMP kinase {Escherichia coli [TaxId: 562]}	96.43
d1ls1a2	207	GTPase domain of the signal sequence recognition p	96.4
d1sxjd2	237	Replication factor C2 {Baker's yeast (Saccharomyce	96.3
d1sq5a_	308	Pantothenate kinase PanK {Escherichia coli [TaxId:	96.3
d1g41a_	443	HslU {Haemophilus influenzae [TaxId: 727]}	96.29
d1ixza_	247	AAA domain of cell division protein FtsH {Thermus	96.27
d1odfa_	286	Hypothetical protein Ygr205W {Baker's yeast (Sacch	96.23
d1sxjb2	224	Replication factor C4 {Baker's yeast (Saccharomyce	96.23
d1kkma_	176	HPr kinase HprK C-terminal domain {Lactobacillus c	96.22
d1sxjc2	227	Replication factor C3 {Baker's yeast (Saccharomyce	96.17
g1f2t.1	292	Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]}	96.17
d1qvra2	387	ClpB, AAA+ modules {Thermus thermophilus [TaxId: 2	96.13
d1lv7a_	256	AAA domain of cell division protein FtsH {Escheric	96.1
d1knxa2	177	HPr kinase HprK C-terminal domain {Mycoplasma pneu	96.07
d1e32a2	258	Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu	96.02
d4tmka_	210	Thymidylate kinase {Escherichia coli [TaxId: 562]}	95.97
d1jjva_	205	Dephospho-CoA kinase {Haemophilus influenzae [TaxI	95.91
d1ko7a2	169	HPr kinase HprK C-terminal domain {Staphylococcus	95.89
d1nn5a_	209	Thymidylate kinase {Human (Homo sapiens) [TaxId: 9	95.82
d1p5zb_	241	Deoxycytidine kinase {Human (Homo sapiens) [TaxId:	95.79
d1a7ja_	288	Phosphoribulokinase {Rhodobacter sphaeroides [TaxI	95.73
d1g8pa_	333	ATPase subunit of magnesium chelatase, BchI {Rhodo	95.73
d1r7ra3	265	Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu	95.68
d1n0wa_	242	DNA repair protein Rad51, catalytic domain {Human	95.61
d1e2ka_	329	Thymidine kinase {Herpes simplex virus type 1, dif	95.55
d1osna_	331	Thymidine kinase {Varicella-zoster virus [TaxId: 1	95.53
d1um8a_	364	ClpX {Helicobacter pylori [TaxId: 210]}	95.53
d2a5yb3	277	CED-4, NB-ARC domain {Caenorhabditis elegans [TaxI	95.51
d1vhta_	208	Dephospho-CoA kinase {Escherichia coli [TaxId: 562	95.5
d1p6xa_	333	Thymidine kinase {Equine herpesvirus type 4 [TaxId	95.49
d1szpa2	251	DNA repair protein Rad51, catalytic domain {Baker'	95.45
d1r6bx3	315	ClpA, an Hsp100 chaperone, AAA+ modules {Escherich	95.4
g1xew.1	329	Smc head domain {Pyrococcus furiosus [TaxId: 2261]	95.38
g1ii8.1	369	Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]}	95.36
d2ocpa1	241	Deoxyguanosine kinase {Human (Homo sapiens) [TaxId	95.33
d1pzna2	254	DNA repair protein Rad51, catalytic domain {Archae	95.31
d1qhla_	222	Cell division protein MukB {Escherichia coli [TaxI	95.27
d1p9ra_	401	Extracellular secretion NTPase EpsE {Vibrio choler	95.08
d1e69a_	308	Smc head domain {Thermotoga maritima [TaxId: 2336]	95.0
d1svma_	362	Papillomavirus large T antigen helicase domain {Si	94.93
d1tmka_	214	Thymidylate kinase {Baker's yeast (Saccharomyces c	94.93
d1tf7a2	242	Circadian clock protein KaiC {Synechococcus sp. st	94.89
d1l8qa2	213	Chromosomal replication initiation factor DnaA {Aq	94.85
d1v5wa_	258	Meiotic recombination protein DMC1/LIM15 homolog {	94.67
d2i1qa2	258	DNA repair protein Rad51, catalytic domain {Archae	94.64
d1w44a_	321	NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]}	94.61
d1a5ta2	207	delta prime subunit of DNA polymerase III, N-domai	94.6
d1e9ra_	433	Bacterial conjugative coupling protein TrwB {Esche	94.49
d1w1wa_	427	Smc head domain {Baker's yeast (Saccharomyces cere	94.48
d1njfa_	239	delta prime subunit of DNA polymerase III, N-domai	94.23
d1cr2a_	277	Gene 4 protein (g4p, DNA primase), helicase domain	94.08
d1tf7a1	242	Circadian clock protein KaiC {Synechococcus sp. st	94.03
d1qvra3	315	ClpB, AAA+ modules {Thermus thermophilus [TaxId: 2	94.02
d1uaaa1	306	DEXX box DNA helicase {Escherichia coli, RepD [Tax	93.9
d1pjra1	318	DEXX box DNA helicase {Bacillus stearothermophilus	93.86
d7mdha1	175	Malate dehydrogenase {Sorghum (Sorghum vulgare), c	93.54
d1nlfa_	274	Hexameric replicative helicase repA {Escherichia c	93.34
d1deka_	241	Deoxynucleoside monophosphate kinase {Bacteriophag	93.11
d1tuea_	205	Replication protein E1 helicase domain {Human papi	93.08
d1xpua3	289	Transcription termination factor Rho, ATPase domai	92.89
d1cp2a_	269	Nitrogenase iron protein {Clostridium pasteurianum	92.24
d5mdha1	154	Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 982	92.2
d1ldna1	148	Lactate dehydrogenase {Bacillus stearothermophilus	92.13
d1w36d1	359	Exodeoxyribonuclease V alpha chain (RecD) {Escheri	92.0
d1u0ja_	267	Rep 40 protein helicase domain {Adeno-associated v	91.73
d1mlda1	144	Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 982	91.09
d1u94a1	263	RecA protein, ATPase-domain {Escherichia coli [Tax	90.98
d1g8fa3	122	ATP sulfurylase C-terminal domain {Baker's yeast (	90.96
d1y7ta1	154	Malate dehydrogenase {Thermus thermophilus [TaxId:	90.84
d1guza1	142	Malate dehydrogenase {Chlorobium vibrioforme [TaxI	90.73
d1ny5a2	247	Transcriptional activator sigm54 (NtrC1), C-termin	90.52
d2jdid3	276	Central domain of beta subunit of F1 ATP synthase	90.33
d1ihua1	296	Arsenite-translocating ATPase ArsA {Escherichia co	90.28
d1ihua2	279	Arsenite-translocating ATPase ArsA {Escherichia co	89.52
d1zpda1	175	Pyruvate decarboxylase {Zymomonas mobilis [TaxId:	89.16
d2afhe1	289	Nitrogenase iron protein {Azotobacter vinelandii [	89.05
d1a5za1	140	Lactate dehydrogenase {Thermotoga maritima [TaxId:	89.0
g1qhh.1	623	DEXX box DNA helicase {Bacillus stearothermophilus	88.83
d1byia_	224	Dethiobiotin synthetase {Escherichia coli [TaxId:	88.62
d1a1va1	136	HCV helicase domain {Human hepatitis C virus (HCV)	88.13
d1c9ka_	180	Adenosylcobinamide kinase/adenosylcobinamide phosp	88.08
d1g3qa_	237	Cell division regulator MinD {Archaeon Pyrococcus	87.91
d2olra1	313	Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxalo	87.9
d1t2da1	150	Lactate dehydrogenase {Malaria parasite (Plasmodiu	87.88
d1ez4a1	146	Lactate dehydrogenase {Lactobacillus pentosus [Tax	87.63
d1j3ba1	318	Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxalo	87.08
d1y6ja1	142	Lactate dehydrogenase {Clostridium thermocellum [T	86.65
d1ii2a1	323	Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxalo	86.64
d1pzga1	154	Lactate dehydrogenase {Toxoplasma gondii [TaxId: 5	86.05
d2jdia3	285	Central domain of alpha subunit of F1 ATP synthase	85.94
d1mo6a1	269	RecA protein, ATPase-domain {Mycobacterium tubercu	85.82
d2gnoa2	198	gamma subunit of DNA polymerase III, N-domain {The	85.24
d1o6za1	142	Malate dehydrogenase {Archaeon Haloarcula marismor	85.2
d1xp8a1	268	RecA protein, ATPase-domain {Deinococcus radiodura	84.7
d1i0za1	160	Lactate dehydrogenase {Human (Homo sapiens), heart	84.47
d1fx0a3	276	Central domain of alpha subunit of F1 ATP synthase	84.35
d1wb9a2	234	DNA repair protein MutS, the C-terminal domain {Es	84.25
d1ewqa2	224	DNA repair protein MutS, the C-terminal domain {Th	83.65
d1hyha1	146	L-2-hydroxyisocapronate dehydrogenase, L-HICDH {La	83.38
d2b8ta1	139	Thymidine kinase, TK1, N-terminal domain {Ureaplas	82.17
d2eyqa3	233	Transcription-repair coupling factor, TRCF {Escher	82.05
d1hyqa_	232	Cell division regulator MinD {Archaeon Archaeoglob	82.01
d1llda1	143	Lactate dehydrogenase {Bifidobacterium longum, str	81.64
d1wp9a1	200	putative ATP-dependent RNA helicase PF2015 {Pyroco	81.24
d1yksa1	140	YFV helicase domain {Yellow fever virus [TaxId: 11	80.94

>d2ngra_ c.37.1.8 (A:) CDC42 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: CDC42
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=8.3e-41  Score=233.03  Aligned_cols=188  Identities=53%  Similarity=0.978  Sum_probs=163.1

Q ss_pred             ceeEEEEEcCCCCCHHHHHHHHhhCCCCCCCCCceeeeeeEEEEECCeEEEEEEEeCCCccccccccccCcCCCcEEEEE
Q 036449            5 RFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILA   84 (197)
Q Consensus         5 ~~~~i~v~G~~~~GKstli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v   84 (197)
                      +.+||+++|.+|||||||+++|..+.+..++.||.+.........++..+.+.+||++|+++|...+..+++++|++++|
T Consensus         2 ~~iKvvllG~~~vGKTSli~r~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~ilv   81 (191)
T d2ngra_           2 QTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVC   81 (191)
T ss_dssp             EEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGTTTGGGGCTTCSEEEEE
T ss_pred             CceEEEEECCCCcCHHHHHHHHHhCCCCCCcCCceeeecceeEeeCCceeeeeccccccchhhhhhhhhcccccceeecc
Confidence            36899999999999999999999999999999999988888888899999999999999999999999999999999999


Q ss_pred             EeCCCchhHHHHHHHHHHHHhhhCCCCCEEEEeeCCcccCCcccc--cCCCCCCcccHHHHHHHHHHhCCCceEEeccCC
Q 036449           85 FSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLRDDKQFF--IDHPGAVPISTAQGEELRKLIGAPAYIECSSKT  162 (197)
Q Consensus        85 ~d~~~~~s~~~~~~~~~~~i~~~~~~~~~ivv~nK~D~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~  162 (197)
                      ||+++++||+.+...|...+....++.|+++|+||+|+.+.....  ........++.++++++++.++..+|++|||++
T Consensus        82 ~d~~~~~Sf~~~~~~~~~~~~~~~~~~~i~lvgnK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~SAk~  161 (191)
T d2ngra_          82 FSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRDDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALT  161 (191)
T ss_dssp             EETTCHHHHHHHHHTHHHHHHHHCTTCCEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHHHHTTCSCEEECCTTT
T ss_pred             cccchHHHHHHHHHHHHHHHhhcCCCCceEEEeccccccccchhhhhhhhcccccccHHHHHHHHHHcCCCeEEEEeCCC
Confidence            999999999999667888888777899999999999997653211  112334457889999999998766899999999


Q ss_pred             CCCHHHHHHHHHHHHcCCCchhhhhhccccccccC
Q 036449          163 QQNVKAVFDAAIRVVLQPPKTKKKKNKAQKACSIL  197 (197)
Q Consensus       163 ~~~i~~l~~~i~~~~~~~~~~~~~~~~~~~~c~~~  197 (197)
                      |.||+++|+.+++.+.++.+.     +++.+|+||
T Consensus       162 ~~~V~e~f~~l~~~~~~~~~~-----k~~~~C~i~  191 (191)
T d2ngra_         162 QKGLKNVFDEAILAALEPPEP-----KKSRRCVLL  191 (191)
T ss_dssp             CTTHHHHHHHHHHHHTSCCST-----TCCCSCCCC
T ss_pred             CcCHHHHHHHHHHHHhcCcCC-----CCCCCCeEC
Confidence            999999999999998877554     344458876

>d2atxa1 c.37.1.8 (A:9-193) RhoQ {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoQ
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=5.8e-40  Score=227.59  Aligned_cols=176  Identities=55%  Similarity=1.003  Sum_probs=155.3

Q ss_pred             CceeEEEEEcCCCCCHHHHHHHHhhCCCCCCCCCceeeeeeEEEEECCeEEEEEEEeCCCccccccccccCcCCCcEEEE
Q 036449            4 SRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFIL   83 (197)
Q Consensus         4 ~~~~~i~v~G~~~~GKstli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~   83 (197)
                      +..+||+++|.+|||||||+++|..+.+...+.+|.+..........+..+.+.+||++|++.+...+..++.++|++++
T Consensus         7 ~~~~Ki~lvG~~~vGKTsLi~r~~~~~f~~~~~~Ti~~~~~~~~~~~~~~~~l~i~D~~g~e~~~~~~~~~~~~a~~~il   86 (185)
T d2atxa1           7 ALMLKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVFDHYAVSVTVGGKQYLLGLYDTAGQEDYDRLRPLSYPMTDVFLI   86 (185)
T ss_dssp             EEEEEEEEEECTTSSHHHHHHHHHHSSCCCSCCCSSCCCEEEEEESSSCEEEEEEECCCCSSSSTTTGGGGCTTCSEEEE
T ss_pred             CcEEEEEEECCCCCCHHHHHHHHhhCCCCCcCCCceeeeeeEEEeeCCceEEeecccccccchhhhhhhhcccccceeee
Confidence            56799999999999999999999999999999999988777778888889999999999999999999999999999999


Q ss_pred             EEeCCCchhHHHHHHHHHHHHhhhCCCCCEEEEeeCCcccCCcccc--cCCCCCCcccHHHHHHHHHHhCCCceEEeccC
Q 036449           84 AFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLRDDKQFF--IDHPGAVPISTAQGEELRKLIGAPAYIECSSK  161 (197)
Q Consensus        84 v~d~~~~~s~~~~~~~~~~~i~~~~~~~~~ivv~nK~D~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~  161 (197)
                      |||++++++|+.+...|...++...+++|+++|+||+|+.+.....  ......+.++.++++++++.++...|+||||+
T Consensus        87 v~d~t~~~Sf~~~~~~~~~~~~~~~~~~~~ilvgnK~Dl~~~~~~~~~~~~~~~r~v~~~~~~~~a~~~~~~~~~E~SAk  166 (185)
T d2atxa1          87 CFSVVNPASFQNVKEEWVPELKEYAPNVPFLLIGTQIDLRDDPKTLARLNDMKEKPICVEQGQKLAKEIGACCYVECSAL  166 (185)
T ss_dssp             EEETTCHHHHHHHHHTHHHHHHHHSTTCCEEEEEECTTSTTCHHHHHHHTTTTCCCCCHHHHHHHHHHHTCSCEEECCTT
T ss_pred             ccccchHHHHHHHHHHHHHHHHhcCCCCCeeEeeeccccccchhhhhhhhhcccccccHHHHHHHHHHcCCCEEEEecCC
Confidence            9999999999988678888888888899999999999997643211  11223455788999999999997689999999


Q ss_pred             CCCCHHHHHHHHHHHHcC
Q 036449          162 TQQNVKAVFDAAIRVVLQ  179 (197)
Q Consensus       162 ~~~~i~~l~~~i~~~~~~  179 (197)
                      +|.||+++|+.+++.+..
T Consensus       167 ~~~gv~e~F~~li~~il~  184 (185)
T d2atxa1         167 TQKGLKTVFDEAIIAILT  184 (185)
T ss_dssp             TCTTHHHHHHHHHHHHHC
T ss_pred             CCcCHHHHHHHHHHHHcC
Confidence            999999999999998764

>d1kmqa_ c.37.1.8 (A:) RhoA {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoA
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.3e-39  Score=223.18  Aligned_cols=174  Identities=51%  Similarity=0.889  Sum_probs=153.4

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHhhCCCCCCCCCceeeeeeEEEEECCeEEEEEEEeCCCccccccccccCcCCCcEEEEEE
Q 036449            6 FIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAF   85 (197)
Q Consensus         6 ~~~i~v~G~~~~GKstli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~   85 (197)
                      ..||+|+|.+|||||||++++..+.+...+.||.+........+++..+.+.+||++|++.+...+..+++++|++|+||
T Consensus         2 r~KivvvG~~~vGKTsLi~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~ilv~   81 (177)
T d1kmqa_           2 RKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGLEDYDRLRPLSYPDTDVILMCF   81 (177)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGTTTGGGGCTTCSEEEEEE
T ss_pred             cEEEEEECCCCcCHHHHHHHHHhCCCCCCcCCceeeeccccccccccceeeeccccCccchhcccchhhcccchhhhhhc
Confidence            36899999999999999999999999999999988888888888999999999999999999999999999999999999


Q ss_pred             eCCCchhHHHHHHHHHHHHhhhCCCCCEEEEeeCCcccCCccccc--CCCCCCcccHHHHHHHHHHhCCCceEEeccCCC
Q 036449           86 SLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLRDDKQFFI--DHPGAVPISTAQGEELRKLIGAPAYIECSSKTQ  163 (197)
Q Consensus        86 d~~~~~s~~~~~~~~~~~i~~~~~~~~~ivv~nK~D~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~  163 (197)
                      |+++++||+.+...|...+....++.|+++|+||+|+.+.+....  .......++.++++.+++.++..+|++|||++|
T Consensus        82 d~~~~~Sf~~~~~~~~~~~~~~~~~~piilvgnK~Dl~~~~~~~~~~~~~~~~~v~~~e~~~~a~~~~~~~~~E~SAkt~  161 (177)
T d1kmqa_          82 SIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTK  161 (177)
T ss_dssp             ETTCHHHHHHHHHTHHHHHHHHSTTSCEEEEEECGGGTTCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEECCTTTC
T ss_pred             ccchhHHHHHHHHHHHHHHHHhCCCCceEEeeecccccchhhHHHHHHHhhcccccHHHHHHHHHHcCCcEEEEecCCCC
Confidence            999999999987778888888888999999999999976532211  112234578889999999999778999999999


Q ss_pred             CCHHHHHHHHHHHHcC
Q 036449          164 QNVKAVFDAAIRVVLQ  179 (197)
Q Consensus       164 ~~i~~l~~~i~~~~~~  179 (197)
                      .||+++|+.+++.+.+
T Consensus       162 ~gi~e~F~~i~~~~l~  177 (177)
T d1kmqa_         162 DGVREVFEMATRAALQ  177 (177)
T ss_dssp             TTHHHHHHHHHHHHHC
T ss_pred             cCHHHHHHHHHHHHhC
Confidence            9999999999998763

>d1xtqa1 c.37.1.8 (A:3-169) GTP-binding protein RheB {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein RheB
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.7e-39  Score=220.84  Aligned_cols=163  Identities=33%  Similarity=0.459  Sum_probs=148.6

Q ss_pred             CceeEEEEEcCCCCCHHHHHHHHhhCCCCCCCCCceeeeeeEEEEECCeEEEEEEEeCCCccccccccccCcCCCcEEEE
Q 036449            4 SRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFIL   83 (197)
Q Consensus         4 ~~~~~i~v~G~~~~GKstli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~   83 (197)
                      ++.+||+++|.+|||||||+++|..+.+...+.||.+..+...+.+++..+.+.+||++|.+.+..++..++.++|++|+
T Consensus         2 ~k~~Kv~liG~~~vGKTsLl~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~l~i~d~~g~~~~~~~~~~~~~~~d~~il   81 (167)
T d1xtqa1           2 SKSRKIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTFTKLITVNGQEYHLQLVDTAGQDEYSIFPQTYSIDINGYIL   81 (167)
T ss_dssp             CEEEEEEEEESTTSSHHHHHHHHHHSCCCSCCCSSCCEEEEEEEEETTEEEEEEEEECCCCCTTCCCCGGGTSSCCEEEE
T ss_pred             CcceEEEEECCCCcCHHHHHHHHHhCCCCcccCcceecccceEEecCcEEEEeeecccccccccccccchhhhhhhhhhh
Confidence            57799999999999999999999999999999999988888888899999999999999999999999999999999999


Q ss_pred             EEeCCCchhHHHHHHHHHHHHhhhC--CCCCEEEEeeCCcccCCcccccCCCCCCcccHHHHHHHHHHhCCCceEEeccC
Q 036449           84 AFSLISKASYENVSKKWIPELKHYA--PGVPIILVGTKLDLRDDKQFFIDHPGAVPISTAQGEELRKLIGAPAYIECSSK  161 (197)
Q Consensus        84 v~d~~~~~s~~~~~~~~~~~i~~~~--~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~  161 (197)
                      |||++++++++.+ ..|+..+....  +++|+++|+||+|+...+.          ++.++++.+++.+++ +|++|||+
T Consensus        82 v~d~~~~~s~~~~-~~~~~~i~~~~~~~~~piilvgnK~Dl~~~r~----------v~~~~~~~~a~~~~~-~~~e~Sak  149 (167)
T d1xtqa1          82 VYSVTSIKSFEVI-KVIHGKLLDMVGKVQIPIMLVGNKKDLHMERV----------ISYEEGKALAESWNA-AFLESSAK  149 (167)
T ss_dssp             EEETTCHHHHHHH-HHHHHHHHHHHCSSCCCEEEEEECTTCGGGCC----------SCHHHHHHHHHHHTC-EEEECCTT
T ss_pred             hcccchhhhhhhh-hhhhhhhhhcccccccceeeeccccccccccc----------hhHHHHHHHHHHcCC-EEEEEecC
Confidence            9999999999999 67777766543  5899999999999977554          788899999999998 89999999


Q ss_pred             CCCCHHHHHHHHHHHHc
Q 036449          162 TQQNVKAVFDAAIRVVL  178 (197)
Q Consensus       162 ~~~~i~~l~~~i~~~~~  178 (197)
                      +|.||+++|+.|++.+.
T Consensus       150 ~~~~v~~~f~~li~~~~  166 (167)
T d1xtqa1         150 ENQTAVDVFRRIILEAE  166 (167)
T ss_dssp             CHHHHHHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHhc
Confidence            99999999999998764

>d2fn4a1 c.37.1.8 (A:24-196) r-Ras {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: r-Ras
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1e-39  Score=224.11  Aligned_cols=167  Identities=31%  Similarity=0.534  Sum_probs=150.6

Q ss_pred             CCCceeEEEEEcCCCCCHHHHHHHHhhCCCCCCCCCceeeeeeEEEEECCeEEEEEEEeCCCccccccccccCcCCCcEE
Q 036449            2 SASRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVF   81 (197)
Q Consensus         2 ~~~~~~~i~v~G~~~~GKstli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~   81 (197)
                      ++.+.+||+++|.+|||||||++++..+.+...+.++..+.....+.+++..+.+.+||++|++++...+..++.++|++
T Consensus         2 ~~~~~~Kv~lvG~~~vGKTsLi~r~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~~~~~~~~   81 (173)
T d2fn4a1           2 PPSETHKLVVVGGGGVGKSALTIQFIQSYFVSDYDPTIEDSYTKICSVDGIPARLDILDTAGQEEFGAMREQYMRAGHGF   81 (173)
T ss_dssp             CSSCEEEEEEEECTTSSHHHHHHHHHHSSCCSSCCTTCCEEEEEEEEETTEEEEEEEEECCCTTTTSCCHHHHHHHCSEE
T ss_pred             CCCCeEEEEEECCCCcCHHHHHHHHHhCCCCcccccccccceeeEeccCCeeeeeeccccccccccccccchhhccceee
Confidence            45678999999999999999999999999999999998888888888999999999999999999999999999999999


Q ss_pred             EEEEeCCCchhHHHHHHHHHHHHhhh-C-CCCCEEEEeeCCcccCCcccccCCCCCCcccHHHHHHHHHHhCCCceEEec
Q 036449           82 ILAFSLISKASYENVSKKWIPELKHY-A-PGVPIILVGTKLDLRDDKQFFIDHPGAVPISTAQGEELRKLIGAPAYIECS  159 (197)
Q Consensus        82 i~v~d~~~~~s~~~~~~~~~~~i~~~-~-~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s  159 (197)
                      |+|||++++.+++.+ ..|+..+... . ++.|+++|+||+|+...+.          ...++++.+++.++. +|++||
T Consensus        82 i~v~d~~~~~s~~~~-~~~~~~i~~~~~~~~~p~ilvgnK~Dl~~~~~----------~~~~~~~~~~~~~~~-~~~e~S  149 (173)
T d2fn4a1          82 LLVFAINDRQSFNEV-GKLFTQILRVKDRDDFPVVLVGNKADLESQRQ----------VPRSEASAFGASHHV-AYFEAS  149 (173)
T ss_dssp             EEEEETTCHHHHHHH-HHHHHHHHHHHTSSCCCEEEEEECGGGGGGCC----------SCHHHHHHHHHHTTC-EEEECB
T ss_pred             eeecccccccccchh-hhhhHHHHHHhccCCCceEEEEEeechhhccc----------cchhhhhHHHHhcCC-EEEEEe
Confidence            999999999999998 6777766543 2 6899999999999976554          677889999999998 899999


Q ss_pred             cCCCCCHHHHHHHHHHHHcCC
Q 036449          160 SKTQQNVKAVFDAAIRVVLQP  180 (197)
Q Consensus       160 a~~~~~i~~l~~~i~~~~~~~  180 (197)
                      |++|.||+++|+.|++.+.+.
T Consensus       150 ak~g~gv~e~f~~l~~~i~k~  170 (173)
T d2fn4a1         150 AKLRLNVDEAFEQLVRAVRKY  170 (173)
T ss_dssp             TTTTBSHHHHHHHHHHHHHHH
T ss_pred             CCCCcCHHHHHHHHHHHHHHH
Confidence            999999999999999988543

>d1mh1a_ c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rac
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=3.8e-39  Score=223.15  Aligned_cols=179  Identities=64%  Similarity=1.070  Sum_probs=157.6

Q ss_pred             CCceeEEEEEcCCCCCHHHHHHHHhhCCCCCCCCCceeeeeeEEEEECCeEEEEEEEeCCCccccccccccCcCCCcEEE
Q 036449            3 ASRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFI   82 (197)
Q Consensus         3 ~~~~~~i~v~G~~~~GKstli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i   82 (197)
                      .++.+||+|+|.+|||||||+++|..+.+...+.+|.++.....+..++..+.+.+||++|++.+..++..+++++|+++
T Consensus         2 ~p~~iKivviG~~~vGKTsli~~~~~~~f~~~~~~ti~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i   81 (183)
T d1mh1a_           2 SPQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVSL   81 (183)
T ss_dssp             CCEEEEEEEECSTTSSHHHHHHHHHHSSCCSSCCCCSCCEEEEEEEETTEEEEEEEECCCCSGGGTTTGGGGCTTCSEEE
T ss_pred             CceeEEEEEECCCCCCHHHHHHHHHhCCCCcccccceeeceeeeeeccCcceEEEeecccccccchhhhhhcccccceee
Confidence            36789999999999999999999999999999999998888888889999999999999999999999999999999999


Q ss_pred             EEEeCCCchhHHHHHHHHHHHHhhhCCCCCEEEEeeCCcccCCcccc--cCCCCCCcccHHHHHHHHHHhCCCceEEecc
Q 036449           83 LAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLRDDKQFF--IDHPGAVPISTAQGEELRKLIGAPAYIECSS  160 (197)
Q Consensus        83 ~v~d~~~~~s~~~~~~~~~~~i~~~~~~~~~ivv~nK~D~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa  160 (197)
                      +|||++++++|+.+...|...++...+++|+++|+||+|+.+.+...  ............++..+++.++..+|+||||
T Consensus        82 lv~d~~~~~sf~~i~~~~~~~~~~~~~~~piilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~E~SA  161 (183)
T d1mh1a_          82 ICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSA  161 (183)
T ss_dssp             EEEETTCHHHHHHHHHTHHHHHHHHSTTSCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEECCT
T ss_pred             eeeccchHHHHHHHHHHHHHHHHHhCCCCcEEEEeecccchhhhhhhhhhhhccccchhhHHHHHHHHHcCCceEEEcCC
Confidence            99999999999998667888888877899999999999997654321  1122234466778899999999779999999


Q ss_pred             CCCCCHHHHHHHHHHHHcCCC
Q 036449          161 KTQQNVKAVFDAAIRVVLQPP  181 (197)
Q Consensus       161 ~~~~~i~~l~~~i~~~~~~~~  181 (197)
                      ++|.||+++|..+++.+..++
T Consensus       162 k~~~~V~e~F~~l~~~il~pp  182 (183)
T d1mh1a_         162 LTQRGLKTVFDEAIRAVLCPP  182 (183)
T ss_dssp             TTCTTHHHHHHHHHHHHSCCC
T ss_pred             CCCcCHHHHHHHHHHHHcCCC
Confidence            999999999999999988764

>d2gjsa1 c.37.1.8 (A:91-258) Rad {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rad
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.9e-39  Score=221.67  Aligned_cols=162  Identities=24%  Similarity=0.385  Sum_probs=131.6

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHhhCCCCCCCCCceeeeeeEEEEECCeEEEEEEEeCCCccccccccccCcCCCcEEEEEE
Q 036449            6 FIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAF   85 (197)
Q Consensus         6 ~~~i~v~G~~~~GKstli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~   85 (197)
                      .+||+++|.+|||||||++++.+..+.. +.++....+...+.+++..+.+.+||+||++.+..++..+++++|++|+||
T Consensus         1 ifKi~lvG~~~vGKTsLi~~~~~~~~~~-~~~~~~~~~~~~i~~~~~~~~l~i~D~~g~e~~~~~~~~~~~~~d~~ilv~   79 (168)
T d2gjsa1           1 VYKVLLLGAPGVGKSALARIFGGVEDGP-EAEAAGHTYDRSIVVDGEEASLMVYDIWEQDGGRWLPGHCMAMGDAYVIVY   79 (168)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHTC----------CEEEEEEEEETTEEEEEEEEECC-------CHHHHHTSCSEEEEEE
T ss_pred             CeEEEEECCCCcCHHHHHHHHhCCccCC-cCCeeeeeecceeeccccccceeeeecccccccceecccchhhhhhhceec
Confidence            4799999999999999999999877644 456666777778888999999999999999999999999999999999999


Q ss_pred             eCCCchhHHHHHHHHHHHHhhhC--CCCCEEEEeeCCcccCCcccccCCCCCCcccHHHHHHHHHHhCCCceEEeccCCC
Q 036449           86 SLISKASYENVSKKWIPELKHYA--PGVPIILVGTKLDLRDDKQFFIDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQ  163 (197)
Q Consensus        86 d~~~~~s~~~~~~~~~~~i~~~~--~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~  163 (197)
                      |++++.+++.+ ..|+..+....  ++.|+++|+||+|+.+.+.          ++..+++.+++.+++ +|++|||++|
T Consensus        80 d~t~~~s~~~~-~~~~~~i~~~~~~~~~piilvgnK~Dl~~~~~----------v~~~~~~~~~~~~~~-~~~e~Sak~~  147 (168)
T d2gjsa1          80 SVTDKGSFEKA-SELRVQLRRARQTDDVPIILVGNKSDLVRSRE----------VSVDEGRACAVVFDC-KFIETSAALH  147 (168)
T ss_dssp             ETTCHHHHHHH-HHHHHHHHHHCC--CCCEEEEEECTTCGGGCC----------SCHHHHHHHHHHHTS-EEEECBTTTT
T ss_pred             ccccccccccc-ccccchhhcccccccceEEEeecccchhhhcc----------hhHHHHHHHHHhcCC-EEEEEeCCCC
Confidence            99999999999 78888877655  5789999999999977554          778899999999998 9999999999


Q ss_pred             CCHHHHHHHHHHHHcCC
Q 036449          164 QNVKAVFDAAIRVVLQP  180 (197)
Q Consensus       164 ~~i~~l~~~i~~~~~~~  180 (197)
                      .|++++|..|++.+..+
T Consensus       148 ~~v~~~f~~l~~~i~~~  164 (168)
T d2gjsa1         148 HNVQALFEGVVRQIRLR  164 (168)
T ss_dssp             BSHHHHHHHHHHHHHHH
T ss_pred             cCHHHHHHHHHHHHHHH
Confidence            99999999999887644

>d1z2aa1 c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab23
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=5.7e-39  Score=218.56  Aligned_cols=162  Identities=36%  Similarity=0.565  Sum_probs=148.1

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHhhCCCCCCCCCcee-eeeeEEEEECCeEEEEEEEeCCCccccccccccCcCCCcEEEEE
Q 036449            6 FIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVF-DNFSANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILA   84 (197)
Q Consensus         6 ~~~i~v~G~~~~GKstli~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v   84 (197)
                      .+||+++|.+|||||||+++|..+.+...+.+|.+ .........++..+.+.+||++|++.+..++..++++++++++|
T Consensus         2 ~iKv~liG~~~vGKSsLi~rl~~~~~~~~~~~ti~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~v   81 (164)
T d1z2aa1           2 AIKMVVVGNGAVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIQVNDEDVRLMLWDTAGQEEFDAITKAYYRGAQACVLV   81 (164)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHCCCCCCSSCCCSSSEEEEEEEETTEEEEEEEECCTTGGGTTCCCHHHHTTCCEEEEE
T ss_pred             eEEEEEECCCCcCHHHHHHHHHhCCCCcccccccccccceeeeeecCceeeeeeeccCCccchhhhhhhhhccCceEEEE
Confidence            48999999999999999999999999998888886 45566777888899999999999999999999999999999999


Q ss_pred             EeCCCchhHHHHHHHHHHHHhhhCCCCCEEEEeeCCcccCCcccccCCCCCCcccHHHHHHHHHHhCCCceEEeccCCCC
Q 036449           85 FSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQQ  164 (197)
Q Consensus        85 ~d~~~~~s~~~~~~~~~~~i~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~  164 (197)
                      ||++++++++.+ ..|++.+....++.|+++|+||+|+.+.+.          +..++++.+++.+++ +|+++||++|.
T Consensus        82 ~d~~~~~s~~~~-~~~~~~i~~~~~~~~iilVgnK~Dl~~~~~----------v~~~~~~~~~~~~~~-~~~e~Sak~g~  149 (164)
T d1z2aa1          82 FSTTDRESFEAI-SSWREKVVAEVGDIPTALVQNKIDLLDDSC----------IKNEEAEGLAKRLKL-RFYRTSVKEDL  149 (164)
T ss_dssp             EETTCHHHHHTH-HHHHHHHHHHHCSCCEEEEEECGGGGGGCS----------SCHHHHHHHHHHHTC-EEEECBTTTTB
T ss_pred             Eeccchhhhhhc-ccccccccccCCCceEEEeeccCCccccee----------eeehhhHHHHHHcCC-EEEEeccCCCc
Confidence            999999999998 789999988778999999999999977654          778889999999998 89999999999


Q ss_pred             CHHHHHHHHHHHHcC
Q 036449          165 NVKAVFDAAIRVVLQ  179 (197)
Q Consensus       165 ~i~~l~~~i~~~~~~  179 (197)
                      ||+++|+.|++.+.+
T Consensus       150 ~v~e~f~~l~~~~lq  164 (164)
T d1z2aa1         150 NVSEVFKYLAEKHLQ  164 (164)
T ss_dssp             SSHHHHHHHHHHHHC
T ss_pred             CHHHHHHHHHHHHhC
Confidence            999999999998753

>d1u8za_ c.37.1.8 (A:) Ras-related protein RalA {Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-related protein RalA
species: Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]

Probab=100.00  E-value=5.2e-39  Score=219.50  Aligned_cols=163  Identities=33%  Similarity=0.568  Sum_probs=146.0

Q ss_pred             ceeEEEEEcCCCCCHHHHHHHHhhCCCCCCCCCceeeeeeEEEEECCeEEEEEEEeCCCccccccccccCcCCCcEEEEE
Q 036449            5 RFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILA   84 (197)
Q Consensus         5 ~~~~i~v~G~~~~GKstli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v   84 (197)
                      +.+||+++|.+|||||||++++..+.+...+.+|.+..+...+.+++..+.+.+||++|++++..++..+++++|++++|
T Consensus         3 ~~~KivlvG~~~vGKTsli~~~~~~~f~~~~~~T~~~~~~~~~~~~~~~~~l~i~d~~g~~~~~~~~~~~~~~~~~~ilv   82 (168)
T d1u8za_           3 ALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGEGFLCV   82 (168)
T ss_dssp             CEEEEEEECSTTSSHHHHHHHHHHSCCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCC---CHHHHHHHHHHCSEEEEE
T ss_pred             ceeEEEEECCCCcCHHHHHHHHHhCCCCcccCCccccccccccccccccccccccccccccchhhhhhhcccccceeEEE
Confidence            46899999999999999999999999999999999888888888999999999999999999998999999999999999


Q ss_pred             EeCCCchhHHHHHHHHHHHHhhhC--CCCCEEEEeeCCcccCCcccccCCCCCCcccHHHHHHHHHHhCCCceEEeccCC
Q 036449           85 FSLISKASYENVSKKWIPELKHYA--PGVPIILVGTKLDLRDDKQFFIDHPGAVPISTAQGEELRKLIGAPAYIECSSKT  162 (197)
Q Consensus        85 ~d~~~~~s~~~~~~~~~~~i~~~~--~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~  162 (197)
                      ||++++++++.+ ..|+..+....  ++.|+++|+||+|+.+.+.          ++.++++.+++..++ +|++|||++
T Consensus        83 ~d~~~~~s~~~~-~~~~~~i~~~~~~~~~piiivgnK~Dl~~~~~----------v~~~~~~~~~~~~~~-~~~e~Sak~  150 (168)
T d1u8za_          83 FSITEMESFAAT-ADFREQILRVKEDENVPFLLVGNKSDLEDKRQ----------VSVEEAKNRADQWNV-NYVETSAKT  150 (168)
T ss_dssp             EETTCHHHHHHH-HHHHHHHHHHHCCTTSCEEEEEECGGGGGGCC----------SCHHHHHHHHHHHTC-EEEECCTTT
T ss_pred             eeccchhhhhhH-HHHHHHHHHhhCCCCCcEEEEecccccccccc----------ccHHHHHHHHHHcCC-eEEEEcCCC
Confidence            999999999998 77887776543  6899999999999976554          788999999999998 899999999


Q ss_pred             CCCHHHHHHHHHHHHcC
Q 036449          163 QQNVKAVFDAAIRVVLQ  179 (197)
Q Consensus       163 ~~~i~~l~~~i~~~~~~  179 (197)
                      |.||+++|++|++.+..
T Consensus       151 g~gv~e~f~~l~~~i~~  167 (168)
T d1u8za_         151 RANVDKVFFDLMREIRA  167 (168)
T ss_dssp             CTTHHHHHHHHHHHHHT
T ss_pred             CcCHHHHHHHHHHHHHC
Confidence            99999999999988754

>d1x1ra1 c.37.1.8 (A:10-178) Ras-related protein M-Ras (XRas) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-related protein M-Ras (XRas)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=1.9e-38  Score=216.83  Aligned_cols=163  Identities=34%  Similarity=0.554  Sum_probs=148.3

Q ss_pred             ceeEEEEEcCCCCCHHHHHHHHhhCCCCCCCCCceeeeeeEEEEECCeEEEEEEEeCCCccccccccccCcCCCcEEEEE
Q 036449            5 RFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILA   84 (197)
Q Consensus         5 ~~~~i~v~G~~~~GKstli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v   84 (197)
                      +.+||+++|.+|||||||++++..+.+...+.++.++.+.....+++..+.+.+||++|++.+..++..+++++|++++|
T Consensus         3 pt~Ki~lvG~~~vGKTsll~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~llv   82 (169)
T d1x1ra1           3 PTYKLVVVGDGGVGKSALTIQFFQKIFVPDYDPTIEDSYLKHTEIDNQWAILDVLDTAGQEEFSAMREQYMRTGDGFLIV   82 (169)
T ss_dssp             CEEEEEEECCTTSSHHHHHHHHHHSSCCTTCCTTCCEEEEEEEEETTEEEEEEEEECCSCGGGCSSHHHHHHHCSEEEEE
T ss_pred             CcEEEEEECCCCcCHHHHHHHHHhCCCCcccCcceeeccccccccccccccccccccccccccccchhhhhhhccEEEEe
Confidence            56999999999999999999999999999999998888888888899999999999999999999999999999999999


Q ss_pred             EeCCCchhHHHHHHHHHHHHhhhC--CCCCEEEEeeCCcccCCcccccCCCCCCcccHHHHHHHHHHhCCCceEEeccCC
Q 036449           85 FSLISKASYENVSKKWIPELKHYA--PGVPIILVGTKLDLRDDKQFFIDHPGAVPISTAQGEELRKLIGAPAYIECSSKT  162 (197)
Q Consensus        85 ~d~~~~~s~~~~~~~~~~~i~~~~--~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~  162 (197)
                      ||++++++|+.+ ..|+..+.+..  .+.|+++++||+|+...+.          ++.++++++++.+++ +|+++||++
T Consensus        83 ~d~~d~~Sf~~~-~~~~~~i~~~~~~~~~p~ilvgnK~Dl~~~~~----------v~~e~~~~~~~~~~~-~~~e~Sak~  150 (169)
T d1x1ra1          83 YSVTDKASFEHV-DRFHQLILRVKDRESFPMILVANKVDLMHLRK----------VTRDQGKEMATKYNI-PYIETSAKD  150 (169)
T ss_dssp             EETTCHHHHHTH-HHHHHHHHHHHTSSCCCEEEEEECTTCSTTCC----------SCHHHHHHHHHHHTC-CEEEEBCSS
T ss_pred             cccccchhhhcc-chhhHHHHhhccccCccEEEEecccchhhhce----------eehhhHHHHHHHcCC-EEEEEcCCC
Confidence            999999999998 67877776553  5899999999999977654          788999999999998 899999998


Q ss_pred             CC-CHHHHHHHHHHHHcC
Q 036449          163 QQ-NVKAVFDAAIRVVLQ  179 (197)
Q Consensus       163 ~~-~i~~l~~~i~~~~~~  179 (197)
                      +. ||+++|..|++.+.+
T Consensus       151 ~~~nV~~~F~~l~~~i~~  168 (169)
T d1x1ra1         151 PPLNVDKTFHDLVRVIRQ  168 (169)
T ss_dssp             SCBSHHHHHHHHHHHHHH
T ss_pred             CCcCHHHHHHHHHHHHHh
Confidence            86 999999999998764

>d1z08a1 c.37.1.8 (A:17-183) Rab21 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab21
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=4.7e-38  Score=214.61  Aligned_cols=163  Identities=30%  Similarity=0.606  Sum_probs=139.0

Q ss_pred             ceeEEEEEcCCCCCHHHHHHHHhhCCCCCCCCCceeeee-eEEEEECCeEEEEEEEeCCCccccccccccCcCCCcEEEE
Q 036449            5 RFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNF-SANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFIL   83 (197)
Q Consensus         5 ~~~~i~v~G~~~~GKstli~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~   83 (197)
                      ..+||+++|.+|||||||++++..+.+...+.+|..... ......++..+.+.+||++|++.+..++..++.++|++|+
T Consensus         2 y~fKivlvG~~~vGKTsLi~r~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~   81 (167)
T d1z08a1           2 YSFKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLGASFLTKKLNIGGKRVNLAIWDTAGQERFHALGPIYYRDSNGAIL   81 (167)
T ss_dssp             EEEEEEEECCTTSCHHHHHHHHHHCCCCSSCCCCCSCEEEEEEEESSSCEEEEEEEECCCC-------CCSSTTCSEEEE
T ss_pred             ceEEEEEECCCCcCHHHHHHHHHhCCCCcccccccccchheeeeccCCccceeeeeccCCcceecccchhhccCCceeEE
Confidence            458999999999999999999999999999999886444 4566778888999999999999999999999999999999


Q ss_pred             EEeCCCchhHHHHHHHHHHHHhhhC-CCCCEEEEeeCCcccCCcccccCCCCCCcccHHHHHHHHHHhCCCceEEeccCC
Q 036449           84 AFSLISKASYENVSKKWIPELKHYA-PGVPIILVGTKLDLRDDKQFFIDHPGAVPISTAQGEELRKLIGAPAYIECSSKT  162 (197)
Q Consensus        84 v~d~~~~~s~~~~~~~~~~~i~~~~-~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~  162 (197)
                      |||++++++|+.+ ..|+..+.... +..|+++++||+|+...+.          ++.++++.+++.+++ +|++|||++
T Consensus        82 v~d~~~~~Sf~~~-~~~~~~~~~~~~~~~~~ilvgnK~Dl~~~~~----------v~~~e~~~~a~~~~~-~~~e~Sak~  149 (167)
T d1z08a1          82 VYDITDEDSFQKV-KNWVKELRKMLGNEICLCIVGNKIDLEKERH----------VSIQEAESYAESVGA-KHYHTSAKQ  149 (167)
T ss_dssp             EEETTCHHHHHHH-HHHHHHHHHHHGGGSEEEEEEECGGGGGGCC----------SCHHHHHHHHHHTTC-EEEEEBTTT
T ss_pred             EEeCCchhHHHhh-hhhhhhcccccccccceeeeccccccccccc----------cchHHHHHHHHHcCC-eEEEEecCC
Confidence            9999999999999 66766666554 6789999999999987654          788999999999998 899999999


Q ss_pred             CCCHHHHHHHHHHHHcC
Q 036449          163 QQNVKAVFDAAIRVVLQ  179 (197)
Q Consensus       163 ~~~i~~l~~~i~~~~~~  179 (197)
                      |.||+++|.+|++.+.+
T Consensus       150 ~~~v~e~F~~l~~~i~~  166 (167)
T d1z08a1         150 NKGIEELFLDLCKRMIE  166 (167)
T ss_dssp             TBSHHHHHHHHHHHHHC
T ss_pred             CcCHHHHHHHHHHHHhh
Confidence            99999999999998865

>d2erxa1 c.37.1.8 (A:6-176) di-Ras2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: di-Ras2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=9.4e-39  Score=218.90  Aligned_cols=164  Identities=27%  Similarity=0.498  Sum_probs=145.4

Q ss_pred             ceeEEEEEcCCCCCHHHHHHHHhhCCCCCCCCCceeeeeeEEEEECCeEEEEEEEeCCCccccccccccCcCCCcEEEEE
Q 036449            5 RFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILA   84 (197)
Q Consensus         5 ~~~~i~v~G~~~~GKstli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v   84 (197)
                      +.+||+++|.+|||||||++++..+.+...+.+|.+..+.....+++..+.+.+||++|++.+...+..++..+|++++|
T Consensus         1 n~~Ki~viG~~~vGKTsLi~r~~~~~f~~~~~~T~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~~~~a~~~ilv   80 (171)
T d2erxa1           1 NDYRVAVFGAGGVGKSSLVLRFVKGTFRESYIPTVEDTYRQVISCDKSICTLQITDTTGSHQFPAMQRLSISKGHAFILV   80 (171)
T ss_dssp             CEEEEEEECCTTSSHHHHHHHHHTCCCCSSCCCCSCEEEEEEEEETTEEEEEEEEECCSCSSCHHHHHHHHHHCSEEEEE
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHhCCCCCccCcceeeccccceeeccccceeccccccccccccccccccccceeEEEEE
Confidence            35899999999999999999999999999999999888888888899999999999999999999999999999999999


Q ss_pred             EeCCCchhHHHHHHHHHHHHhh-h--CCCCCEEEEeeCCcccCCcccccCCCCCCcccHHHHHHHHHHhCCCceEEeccC
Q 036449           85 FSLISKASYENVSKKWIPELKH-Y--APGVPIILVGTKLDLRDDKQFFIDHPGAVPISTAQGEELRKLIGAPAYIECSSK  161 (197)
Q Consensus        85 ~d~~~~~s~~~~~~~~~~~i~~-~--~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~  161 (197)
                      ||++++++++.+ ..|+..+.. .  .++.|+++||||+|+.+.+.          ++.++++++++.+++ +|++|||+
T Consensus        81 ~d~~~~~s~~~~-~~~~~~~~~~~~~~~~~piilVgnK~Dl~~~~~----------v~~~e~~~~~~~~~~-~~~e~Sak  148 (171)
T d2erxa1          81 YSITSRQSLEEL-KPIYEQICEIKGDVESIPIMLVGNKCDESPSRE----------VQSSEAEALARTWKC-AFMETSAK  148 (171)
T ss_dssp             EETTCHHHHHTT-HHHHHHHHHHHC---CCCEEEEEECGGGGGGCC----------SCHHHHHHHHHHHTC-EEEECBTT
T ss_pred             eecccccchhcc-cchhhhhhhhhccCCCCcEEEEeeccccccccc----------ccHHHHHHHHHHcCC-eEEEEcCC
Confidence            999999999998 566655543 2  26899999999999976554          778899999999998 89999999


Q ss_pred             CCCCHHHHHHHHHHHHcCC
Q 036449          162 TQQNVKAVFDAAIRVVLQP  180 (197)
Q Consensus       162 ~~~~i~~l~~~i~~~~~~~  180 (197)
                      +|.||+++|..|++.+.++
T Consensus       149 ~~~~v~e~f~~l~~~~~~~  167 (171)
T d2erxa1         149 LNHNVKELFQELLNLEKRR  167 (171)
T ss_dssp             TTBSHHHHHHHHHHTCCSS
T ss_pred             CCcCHHHHHHHHHHHHHHh
Confidence            9999999999999866443

>d1m7ba_ c.37.1.8 (A:) RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoE (RND3)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=5.5e-38  Score=216.40  Aligned_cols=174  Identities=37%  Similarity=0.719  Sum_probs=153.5

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHhhCCCCCCCCCceeeeeeEEEEECCeEEEEEEEeCCCccccccccccCcCCCcEEEEEE
Q 036449            6 FIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAF   85 (197)
Q Consensus         6 ~~~i~v~G~~~~GKstli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~   85 (197)
                      .+||+++|.+|||||||++++..+.+...+.||.+........+++..+.+++||++|++.+...+..+++++|++|+||
T Consensus         2 ~~KivliG~~~vGKTsli~r~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~ilv~   81 (179)
T d1m7ba_           2 KCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYTASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDSDAVLICF   81 (179)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCSEEEEEEEEECSSCEEEEEEEEECCSGGGTTTGGGGCTTCSEEEEEE
T ss_pred             ceEEEEECCCCcCHHHHHHHHHhCCCCCccCCceeecccccccccceEEeeccccccccccccccccchhhhhhhhheee
Confidence            47999999999999999999999999999999988888888888899999999999999999999999999999999999


Q ss_pred             eCCCchhHHHHHHHHHHHHhhhCCCCCEEEEeeCCcccCCcccc--cCCCCCCcccHHHHHHHHHHhCCCceEEeccCCC
Q 036449           86 SLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLRDDKQFF--IDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQ  163 (197)
Q Consensus        86 d~~~~~s~~~~~~~~~~~i~~~~~~~~~ivv~nK~D~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~  163 (197)
                      |+++++||+.+...|...+....++.|+++||||+|+.......  ......+.++.+++..+++..+..+|+||||++|
T Consensus        82 d~~~~~Sf~~~~~~~~~~~~~~~~~~~iilVgnK~Dl~~~~~~~~~~~~~~~~~V~~~e~~~~a~~~~~~~y~E~SAk~~  161 (179)
T d1m7ba_          82 DISRPETLDSVLKKWKGEIQEFCPNTKMLLVGCKSDLRTDVSTLVELSNHRQTPVSYDQGANMAKQIGAATYIECSALQS  161 (179)
T ss_dssp             ETTCHHHHHHHHHTHHHHHHHHCTTCEEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHHHHHTCSEEEECBTTTB
T ss_pred             ecccCCCHHHHHHHHHHHHhccCCcceEEEEEecccccccchhhHHHhhhhcCcchHHHHHHHHHHhCCCeEEEEeCCCC
Confidence            99999999998777888888877899999999999997543211  1223345688899999999998778999999999


Q ss_pred             C-CHHHHHHHHHHHHcC
Q 036449          164 Q-NVKAVFDAAIRVVLQ  179 (197)
Q Consensus       164 ~-~i~~l~~~i~~~~~~  179 (197)
                      . +++++|+.+++.+.+
T Consensus       162 ~n~i~~~F~~~~~~~l~  178 (179)
T d1m7ba_         162 ENSVRDIFHVATLACVN  178 (179)
T ss_dssp             HHHHHHHHHHHHHHHHT
T ss_pred             CcCHHHHHHHHHHHHhc
Confidence            7 599999999998865

>d3raba_ c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab3a
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=100.00  E-value=8e-38  Score=213.82  Aligned_cols=164  Identities=32%  Similarity=0.635  Sum_probs=144.5

Q ss_pred             ceeEEEEEcCCCCCHHHHHHHHhhCCCCCCCCCcee-eeeeEEEEECCeEEEEEEEeCCCccccccccccCcCCCcEEEE
Q 036449            5 RFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVF-DNFSANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFIL   83 (197)
Q Consensus         5 ~~~~i~v~G~~~~GKstli~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~   83 (197)
                      ..+||+++|.+|||||||++++..+.+...+.++.+ +.....+...+..+.+++||+||++++..++..+++++|++|+
T Consensus         4 ~~~Ki~vvG~~~vGKTsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~wDt~G~e~~~~~~~~~~~~ad~~il   83 (169)
T d3raba_           4 YMFKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDTAGQERYRTITTAYYRGAMGFIL   83 (169)
T ss_dssp             EEEEEEEECSTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHTTTTTCCEEEE
T ss_pred             eEEEEEEECCCCcCHHHHHHHHHcCCCCcccccccccceeeEEEEeecceEEEEEEECCCchhhHHHHHHHHhcCCEEEE
Confidence            468999999999999999999999999888888875 4455667778888999999999999999999999999999999


Q ss_pred             EEeCCCchhHHHHHHHHHHHHhhhC-CCCCEEEEeeCCcccCCcccccCCCCCCcccHHHHHHHHHHhCCCceEEeccCC
Q 036449           84 AFSLISKASYENVSKKWIPELKHYA-PGVPIILVGTKLDLRDDKQFFIDHPGAVPISTAQGEELRKLIGAPAYIECSSKT  162 (197)
Q Consensus        84 v~d~~~~~s~~~~~~~~~~~i~~~~-~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~  162 (197)
                      |||+++++++... ..|...+.... ++.|+++++||+|+...+.          ++.++++.+++..+. +|++|||++
T Consensus        84 v~d~~~~~s~~~~-~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~----------v~~~~~~~~~~~~~~-~~~e~Sak~  151 (169)
T d3raba_          84 MYDITNEESFNAV-QDWSTQIKTYSWDNAQVLLVGNKCDMEDERV----------VSSERGRQLADHLGF-EFFEASAKD  151 (169)
T ss_dssp             EEETTCHHHHHTH-HHHHHHHHHHCCSCCEEEEEEECTTCGGGCC----------SCHHHHHHHHHHHTC-EEEECBTTT
T ss_pred             EEECccchhhhhh-hhhhhhhhcccCCcceEEEEEeecccccccc----------cchhhhHHHHHHcCC-EEEEecCCC
Confidence            9999999999998 56666555554 7899999999999977554          778889999999998 899999999


Q ss_pred             CCCHHHHHHHHHHHHcCC
Q 036449          163 QQNVKAVFDAAIRVVLQP  180 (197)
Q Consensus       163 ~~~i~~l~~~i~~~~~~~  180 (197)
                      |.|++++|++|++.+.++
T Consensus       152 g~gv~e~f~~l~~~i~ek  169 (169)
T d3raba_         152 NINVKQTFERLVDVICEK  169 (169)
T ss_dssp             TBSHHHHHHHHHHHHHTC
T ss_pred             CcCHHHHHHHHHHHHhhC
Confidence            999999999999988653

>d2erya1 c.37.1.8 (A:10-180) r-Ras2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: r-Ras2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.5e-38  Score=217.84  Aligned_cols=162  Identities=32%  Similarity=0.610  Sum_probs=143.1

Q ss_pred             ceeEEEEEcCCCCCHHHHHHHHhhCCCCCCCCCceeeeeeEEEEECCeEEEEEEEeCCCccccccccccCcCCCcEEEEE
Q 036449            5 RFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILA   84 (197)
Q Consensus         5 ~~~~i~v~G~~~~GKstli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v   84 (197)
                      +.+||+++|.+|||||||++++..+.+...+.+|.++.....+.+++..+.+.+||++|++.+...+..++..+|++++|
T Consensus         4 ~~~Ki~lvG~~~vGKTsLi~r~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~ilv   83 (171)
T d2erya1           4 EKYRLVVVGGGGVGKSALTIQFIQSYFVTDYDPTIEDSYTKQCVIDDRAARLDILDTAGQEEFGAMREQYMRTGEGFLLV   83 (171)
T ss_dssp             CEEEEEEEECTTSSHHHHHHHHHHSCCCSSCCTTCCEEEEEEEEETTEEEEEEEEECC----CCHHHHHHHHHCSEEEEE
T ss_pred             cceEEEEECCCCCCHHHHHHHHHhCCCCcccCcccccceeeeeeecccccccccccccccccccccccccccccceEEEe
Confidence            44899999999999999999999999999999999888888899999999999999999999999999999999999999


Q ss_pred             EeCCCchhHHHHHHHHHHHHhhh-C-CCCCEEEEeeCCcccCCcccccCCCCCCcccHHHHHHHHHHhCCCceEEeccCC
Q 036449           85 FSLISKASYENVSKKWIPELKHY-A-PGVPIILVGTKLDLRDDKQFFIDHPGAVPISTAQGEELRKLIGAPAYIECSSKT  162 (197)
Q Consensus        85 ~d~~~~~s~~~~~~~~~~~i~~~-~-~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~  162 (197)
                      ||.+++++++.+ ..|+..+... . ++.|+++|+||+|+...+.          +..+++..+++.+++ +|++|||++
T Consensus        84 ~d~~~~~s~~~~-~~~~~~~~~~~~~~~~p~ilvgnK~Dl~~~~~----------v~~~~~~~~~~~~~~-~~~e~Sak~  151 (171)
T d2erya1          84 FSVTDRGSFEEI-YKFQRQILRVKDRDEFPMILIGNKADLDHQRQ----------VTQEEGQQLARQLKV-TYMEASAKI  151 (171)
T ss_dssp             EETTCHHHHHTH-HHHHHHHHHHHTSSCCSEEEEEECTTCTTSCS----------SCHHHHHHHHHHTTC-EEEECBTTT
T ss_pred             eccccccchhhH-HHHhHHHHhhcccCCCCEEEEEeccchhhhcc----------chHHHHHHHHHHcCC-EEEEEcCCC
Confidence            999999999999 6676655443 3 5799999999999976654          778899999999998 899999999


Q ss_pred             CCCHHHHHHHHHHHHc
Q 036449          163 QQNVKAVFDAAIRVVL  178 (197)
Q Consensus       163 ~~~i~~l~~~i~~~~~  178 (197)
                      |.||+++|..|++.+.
T Consensus       152 ~~~i~e~f~~l~~~i~  167 (171)
T d2erya1         152 RMNVDQAFHELVRVIR  167 (171)
T ss_dssp             TBSHHHHHHHHHHHHH
T ss_pred             CcCHHHHHHHHHHHHH
Confidence            9999999999999874

>d1kaoa_ c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rap2a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=3e-38  Score=215.61  Aligned_cols=162  Identities=31%  Similarity=0.583  Sum_probs=147.4

Q ss_pred             ceeEEEEEcCCCCCHHHHHHHHhhCCCCCCCCCceeeeeeEEEEECCeEEEEEEEeCCCccccccccccCcCCCcEEEEE
Q 036449            5 RFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILA   84 (197)
Q Consensus         5 ~~~~i~v~G~~~~GKstli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v   84 (197)
                      +.+||+++|.+|||||||++++..+.+...+.++.++.+.....+++..+.+.+||++|++.+...+..++.+++++++|
T Consensus         2 k~~Ki~lvG~~~vGKTsLi~r~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~~~~a~~~ilv   81 (167)
T d1kaoa_           2 REYKVVVLGSGGVGKSALTVQFVTGTFIEKYDPTIEDFYRKEIEVDSSPSVLEILDTAGTEQFASMRDLYIKNGQGFILV   81 (167)
T ss_dssp             CEEEEEEECCTTSSHHHHHHHHHHSCCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCCTTCCHHHHHHHHHHCSEEEEE
T ss_pred             ceeEEEEECCCCcCHHHHHHHHHhCCCCCccCCceeeeeeeeeecCcceEeeccccCCCccccccchHHHhhcccceeee
Confidence            57999999999999999999999999999999999888888888999999999999999999999999999999999999


Q ss_pred             EeCCCchhHHHHHHHHHHHHhhhC--CCCCEEEEeeCCcccCCcccccCCCCCCcccHHHHHHHHHHhCCCceEEeccCC
Q 036449           85 FSLISKASYENVSKKWIPELKHYA--PGVPIILVGTKLDLRDDKQFFIDHPGAVPISTAQGEELRKLIGAPAYIECSSKT  162 (197)
Q Consensus        85 ~d~~~~~s~~~~~~~~~~~i~~~~--~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~  162 (197)
                      ||+++++++..+ ..|...+....  ++.|+++||||+|+...+.          +..++++.+++.++. +|++|||++
T Consensus        82 ~d~~~~~s~~~~-~~~~~~~~~~~~~~~~piilvgnK~Dl~~~~~----------~~~~~~~~~~~~~~~-~~~e~Sak~  149 (167)
T d1kaoa_          82 YSLVNQQSFQDI-KPMRDQIIRVKRYEKVPVILVGNKVDLESERE----------VSSSEGRALAEEWGC-PFMETSAKS  149 (167)
T ss_dssp             EETTCHHHHHHH-HHHHHHHHHHTTTSCCCEEEEEECGGGGGGCC----------SCHHHHHHHHHHHTS-CEEEECTTC
T ss_pred             eeecchhhhhhh-hchhhhhhhhccCCCCCEEEEEEccchhhccc----------chHHHHHHHHHHcCC-eEEEECCCC
Confidence            999999999999 67776666543  6899999999999977554          677889999999998 899999999


Q ss_pred             CCCHHHHHHHHHHHHc
Q 036449          163 QQNVKAVFDAAIRVVL  178 (197)
Q Consensus       163 ~~~i~~l~~~i~~~~~  178 (197)
                      |.||+++|..|++++.
T Consensus       150 g~~i~e~f~~i~~~i~  165 (167)
T d1kaoa_         150 KTMVDELFAEIVRQMN  165 (167)
T ss_dssp             HHHHHHHHHHHHHHHH
T ss_pred             CcCHHHHHHHHHHHHc
Confidence            9999999999998764

>d1c1ya_ c.37.1.8 (A:) Rap1A {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rap1A
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=4e-38  Score=214.94  Aligned_cols=163  Identities=29%  Similarity=0.538  Sum_probs=146.1

Q ss_pred             ceeEEEEEcCCCCCHHHHHHHHhhCCCCCCCCCceeeeeeEEEEECCeEEEEEEEeCCCccccccccccCcCCCcEEEEE
Q 036449            5 RFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILA   84 (197)
Q Consensus         5 ~~~~i~v~G~~~~GKstli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v   84 (197)
                      +.+||+++|.+|||||||++++..+.+...+.++.+..+...+.+++..+.+.+||++|++.+...+..++.++|++|+|
T Consensus         2 r~~KivvvG~~~vGKTsli~r~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~ilv   81 (167)
T d1c1ya_           2 REYKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDCQQCMLEILDTAGTEQFTAMRDLYMKNGQGFALV   81 (167)
T ss_dssp             CEEEEEEECSTTSSHHHHHHHHHHCCCCCSCCCCSEEEEEEEEESSSCEEEEEEEEECSSCSSTTHHHHHHHHCSEEEEE
T ss_pred             ceeEEEEECCCCCCHHHHHHHHHcCCCCCccCCccccccceeEEeeeeEEEeccccccCcccccccccccccccceeEEe
Confidence            57899999999999999999999999999999999888888888889999999999999999999999999999999999


Q ss_pred             EeCCCchhHHHHHHHHHHHHhhh-C-CCCCEEEEeeCCcccCCcccccCCCCCCcccHHHHHHHHHHhCCCceEEeccCC
Q 036449           85 FSLISKASYENVSKKWIPELKHY-A-PGVPIILVGTKLDLRDDKQFFIDHPGAVPISTAQGEELRKLIGAPAYIECSSKT  162 (197)
Q Consensus        85 ~d~~~~~s~~~~~~~~~~~i~~~-~-~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~  162 (197)
                      ||++++++++.+ ..|+..+... . +++|+++|+||+|+.....          ...+++..+++.++..+|++|||++
T Consensus        82 ~d~~~~~sf~~~-~~~~~~~~~~~~~~~~p~ilvgnK~Dl~~~~~----------~~~~~~~~~~~~~~~~~~~e~Sak~  150 (167)
T d1c1ya_          82 YSITAQSTFNDL-QDLREQILRVKDTEDVPMILVGNKCDLEDERV----------VGKEQGQNLARQWCNCAFLESSAKS  150 (167)
T ss_dssp             EETTCHHHHHTH-HHHHHHHHHHHCCSCCCEEEEEECTTCGGGCC----------SCHHHHHHHHHHTTSCEEEECBTTT
T ss_pred             eeccchhhhHhH-HHHHHHHHHhcCCCCCeEEEEEEecCcccccc----------cchhHHHHHHHHhCCCEEEEEcCCC
Confidence            999999999999 6666665543 3 6899999999999977654          6778888998886555899999999


Q ss_pred             CCCHHHHHHHHHHHHc
Q 036449          163 QQNVKAVFDAAIRVVL  178 (197)
Q Consensus       163 ~~~i~~l~~~i~~~~~  178 (197)
                      |.||+++|.+|++++.
T Consensus       151 g~gv~e~F~~l~~~i~  166 (167)
T d1c1ya_         151 KINVNEIFYDLVRQIN  166 (167)
T ss_dssp             TBSHHHHHHHHHHHHT
T ss_pred             CcCHHHHHHHHHHHhc
Confidence            9999999999998875

>d2ew1a1 c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab30
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.9e-37  Score=212.37  Aligned_cols=163  Identities=33%  Similarity=0.599  Sum_probs=144.2

Q ss_pred             ceeEEEEEcCCCCCHHHHHHHHhhCCCCCCCCCcee-eeeeEEEEECCeEEEEEEEeCCCccccccccccCcCCCcEEEE
Q 036449            5 RFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVF-DNFSANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFIL   83 (197)
Q Consensus         5 ~~~~i~v~G~~~~GKstli~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~   83 (197)
                      ..+||+++|.+|||||||++++..+.+...+.++.. +.....+.+++..+.+.+|||||++.|..+++.++++++++++
T Consensus         4 ~~~Ki~lvG~~~vGKTsLi~~l~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~~~~~~i~   83 (171)
T d2ew1a1           4 FLFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEINGEKVKLQIWDTAGQERFRSITQSYYRSANALIL   83 (171)
T ss_dssp             EEEEEEEEESTTSSHHHHHHHHHHSSCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHGGGSTTCSEEEE
T ss_pred             EEEEEEEECCCCcCHHHHHHHHHhCCCCCcccccccceEEEEEEEECCEEEEEEEEECCCchhhHHHHHHHHhccceEEE
Confidence            468999999999999999999999999888887774 4456677888999999999999999999999999999999999


Q ss_pred             EEeCCCchhHHHHHHHHHHHHhhhC-CCCCEEEEeeCCcccCCcccccCCCCCCcccHHHHHHHHHHhCCCceEEeccCC
Q 036449           84 AFSLISKASYENVSKKWIPELKHYA-PGVPIILVGTKLDLRDDKQFFIDHPGAVPISTAQGEELRKLIGAPAYIECSSKT  162 (197)
Q Consensus        84 v~d~~~~~s~~~~~~~~~~~i~~~~-~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~  162 (197)
                      |+|++++.+++.+ ..|...+.... +..|+++|+||+|+.....          ++.++++.+++.++. +|++|||++
T Consensus        84 v~d~~~~~s~~~~-~~~~~~i~~~~~~~~~~ilvgnK~D~~~~~~----------v~~~~~~~~~~~~~~-~~~~~SAkt  151 (171)
T d2ew1a1          84 TYDITCEESFRCL-PEWLREIEQYASNKVITVLVGNKIDLAERRE----------VSQQRAEEFSEAQDM-YYLETSAKE  151 (171)
T ss_dssp             EEETTCHHHHHTH-HHHHHHHHHHSCTTCEEEEEEECGGGGGGCS----------SCHHHHHHHHHHHTC-CEEECCTTT
T ss_pred             eeecccchhhhhh-hhhhhhhcccccccccEEEEEeecccccccc----------hhhhHHHHHHHhCCC-EEEEEccCC
Confidence            9999999999999 56666665554 6799999999999976554          678889999999998 899999999


Q ss_pred             CCCHHHHHHHHHHHHcC
Q 036449          163 QQNVKAVFDAAIRVVLQ  179 (197)
Q Consensus       163 ~~~i~~l~~~i~~~~~~  179 (197)
                      |.||+++|.+|++.+..
T Consensus       152 g~gV~e~f~~l~~~l~~  168 (171)
T d2ew1a1         152 SDNVEKLFLDLACRLIS  168 (171)
T ss_dssp             CTTHHHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHH
Confidence            99999999999987753

>d2atva1 c.37.1.8 (A:5-172) Ras-like estrogen-regulated growth inhibitor, RERG {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-like estrogen-regulated growth inhibitor, RERG
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=4.2e-38  Score=214.98  Aligned_cols=161  Identities=30%  Similarity=0.497  Sum_probs=140.8

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHhhCCCCCCCCCceeeeeeEEEEECCeEEEEEEEeCCCccccccccccCcCCCcEEEEEE
Q 036449            6 FIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAF   85 (197)
Q Consensus         6 ~~~i~v~G~~~~GKstli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~   85 (197)
                      .+||+++|++|||||||++++..+.+...+.||.+..+......++..+.+++||++|++.+. ....++.+++++++||
T Consensus         2 eiKi~lvG~~~vGKTsli~r~~~~~f~~~~~pTi~~~~~~~~~~~~~~~~l~i~D~~g~~~~~-~~~~~~~~~~~~ilv~   80 (168)
T d2atva1           2 EVKLAIFGRAGVGKSALVVRFLTKRFIWEYDPTLESTYRHQATIDDEVVSMEILDTAGQEDTI-QREGHMRWGEGFVLVY   80 (168)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHHSCCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCCCCCCH-HHHHHHHHCSEEEEEE
T ss_pred             cEEEEEECCCCCCHHHHHHHHHhCCCCCccCCceeccccccccccccceEEEEeecccccccc-cchhhhcccccceeec
Confidence            489999999999999999999999999999999988888888889999999999999998764 3455788899999999


Q ss_pred             eCCCchhHHHHHHHHHHHHhh-h-CCCCCEEEEeeCCcccCCcccccCCCCCCcccHHHHHHHHHHhCCCceEEeccCCC
Q 036449           86 SLISKASYENVSKKWIPELKH-Y-APGVPIILVGTKLDLRDDKQFFIDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQ  163 (197)
Q Consensus        86 d~~~~~s~~~~~~~~~~~i~~-~-~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~  163 (197)
                      |+++++++..+ ..|...+.. . .++.|+++|+||+|+.+.+.          ++.++++++++.+++ +|++|||++|
T Consensus        81 d~~~~~s~~~~-~~~~~~~~~~~~~~~~piilvgnK~Dl~~~r~----------V~~~e~~~~a~~~~~-~~~e~Saktg  148 (168)
T d2atva1          81 DITDRGSFEEV-LPLKNILDEIKKPKNVTLILVGNKADLDHSRQ----------VSTEEGEKLATELAC-AFYECSACTG  148 (168)
T ss_dssp             ETTCHHHHHTH-HHHHHHHHHHHTTSCCCEEEEEECGGGGGGCC----------SCHHHHHHHHHHHTS-EEEECCTTTC
T ss_pred             ccCCccchhhh-hhhcccccccccccCcceeeeccchhhhhhcc----------CcHHHHHHHHHHhCC-eEEEEccccC
Confidence            99999999998 555544433 2 36899999999999976554          788999999999998 8999999999


Q ss_pred             C-CHHHHHHHHHHHHcC
Q 036449          164 Q-NVKAVFDAAIRVVLQ  179 (197)
Q Consensus       164 ~-~i~~l~~~i~~~~~~  179 (197)
                      . ||+++|..|++.+.+
T Consensus       149 ~gnV~e~F~~l~~~i~~  165 (168)
T d2atva1         149 EGNITEIFYELCREVRR  165 (168)
T ss_dssp             TTCHHHHHHHHHHHHHH
T ss_pred             CcCHHHHHHHHHHHHHH
Confidence            8 599999999988753

>d1z0ja1 c.37.1.8 (A:2-168) Rab-22a {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-22a
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=3.2e-37  Score=210.42  Aligned_cols=162  Identities=26%  Similarity=0.548  Sum_probs=144.7

Q ss_pred             ceeEEEEEcCCCCCHHHHHHHHhhCCCCCCCCCceeeee-eEEEEECCeEEEEEEEeCCCccccccccccCcCCCcEEEE
Q 036449            5 RFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNF-SANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFIL   83 (197)
Q Consensus         5 ~~~~i~v~G~~~~GKstli~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~   83 (197)
                      +.+||+++|.+|||||||+++|..+.+...+.+|..... ......++....+.+||++|++.+..++..++..++++|+
T Consensus         3 k~~Ki~lvG~~~vGKTsli~rl~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~   82 (167)
T d1z0ja1           3 RELKVCLLGDTGVGKSSIMWRFVEDSFDPNINPTIGASFMTKTVQYQNELHKFLIWDTAGLERFRALAPMYYRGSAAAII   82 (167)
T ss_dssp             EEEEEEEECCTTSSHHHHHHHHHHSCCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGTHHHHTTCSEEEE
T ss_pred             ceeEEEEECCCCcCHHHHHHHHHhCCCCcccccccccccccccccccccccceeeeecCCchhhhHHHHHHHhhccceEE
Confidence            679999999999999999999999999999888886555 4556667778889999999999999999999999999999


Q ss_pred             EEeCCCchhHHHHHHHHHHHHhhhC-CCCCEEEEeeCCcccCCcccccCCCCCCcccHHHHHHHHHHhCCCceEEeccCC
Q 036449           84 AFSLISKASYENVSKKWIPELKHYA-PGVPIILVGTKLDLRDDKQFFIDHPGAVPISTAQGEELRKLIGAPAYIECSSKT  162 (197)
Q Consensus        84 v~d~~~~~s~~~~~~~~~~~i~~~~-~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~  162 (197)
                      |||++++++++.+ ..|...+.... ++.|+++|+||+|+.+.+.          ++.++++++++.+++ +|++|||++
T Consensus        83 v~d~~~~~s~~~~-~~~~~~~~~~~~~~~~iilvgnK~Dl~~~~~----------v~~~~~~~~~~~~~~-~~~e~SAk~  150 (167)
T d1z0ja1          83 VYDITKEETFSTL-KNWVRELRQHGPPSIVVAIAGNKCDLTDVRE----------VMERDAKDYADSIHA-IFVETSAKN  150 (167)
T ss_dssp             EEETTCHHHHHHH-HHHHHHHHHHSCTTSEEEEEEECTTCGGGCC----------SCHHHHHHHHHHTTC-EEEECBTTT
T ss_pred             EeeechhhhhhhH-HHhhhhhhhccCCcceEEEecccchhccccc----------hhHHHHHHHHHHcCC-EEEEEecCC
Confidence            9999999999999 66766666555 7899999999999976554          778899999999998 899999999


Q ss_pred             CCCHHHHHHHHHHHHc
Q 036449          163 QQNVKAVFDAAIRVVL  178 (197)
Q Consensus       163 ~~~i~~l~~~i~~~~~  178 (197)
                      |.||+++|.+|++.+.
T Consensus       151 ~~nV~e~f~~l~~~i~  166 (167)
T d1z0ja1         151 AININELFIEISRRIP  166 (167)
T ss_dssp             TBSHHHHHHHHHHHCC
T ss_pred             CCCHHHHHHHHHHhCC
Confidence            9999999999999873

>d1z0fa1 c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab14
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.1e-37  Score=211.20  Aligned_cols=162  Identities=28%  Similarity=0.560  Sum_probs=143.8

Q ss_pred             ceeEEEEEcCCCCCHHHHHHHHhhCCCCCCCCCceee-eeeEEEEECCeEEEEEEEeCCCccccccccccCcCCCcEEEE
Q 036449            5 RFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFD-NFSANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFIL   83 (197)
Q Consensus         5 ~~~~i~v~G~~~~GKstli~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~   83 (197)
                      ..+||+++|.+|||||||++++..+.+...+.++... .......+++..+.+.+||+||++.+..++..+++++|++++
T Consensus         3 y~~KivlvG~~~vGKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~d~~il   82 (166)
T d1z0fa1           3 YIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQERFRAVTRSYYRGAAGALM   82 (166)
T ss_dssp             EEEEEEEECSTTSSHHHHHHHHHHSCCCSSCTTSCCCCEEEEEEEETTEEEEEEEEECTTGGGTCHHHHHHHHTCSEEEE
T ss_pred             EEEEEEEECCCCcCHHHHHHHHHhCCCCCcccccccccceeEEEEECCEEEEEEEeccCCchhHHHHHHHHhcCCcEEEE
Confidence            4589999999999999999999999998888877754 445667788999999999999999999999999999999999


Q ss_pred             EEeCCCchhHHHHHHHHHHHHhhhC-CCCCEEEEeeCCcccCCcccccCCCCCCcccHHHHHHHHHHhCCCceEEeccCC
Q 036449           84 AFSLISKASYENVSKKWIPELKHYA-PGVPIILVGTKLDLRDDKQFFIDHPGAVPISTAQGEELRKLIGAPAYIECSSKT  162 (197)
Q Consensus        84 v~d~~~~~s~~~~~~~~~~~i~~~~-~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~  162 (197)
                      |||++++++++.+ ..|+..+.... +..|+++++||+|+.....          ...++++.+++.+++ +|++|||++
T Consensus        83 v~d~~~~~s~~~~-~~~~~~~~~~~~~~~~iilvgnK~Dl~~~~~----------~~~~~~~~~~~~~~~-~~~e~Sakt  150 (166)
T d1z0fa1          83 VYDITRRSTYNHL-SSWLTDARNLTNPNTVIILIGNKADLEAQRD----------VTYEEAKQFAEENGL-LFLEASAKT  150 (166)
T ss_dssp             EEETTCHHHHHTH-HHHHHHHHHHSCTTCEEEEEEECTTCGGGCC----------SCHHHHHHHHHHTTC-EEEECCTTT
T ss_pred             EeccCchHHHHHH-HHHHHHHHhhccccceEEEEcccccchhhcc----------cHHHHHHHHHHHcCC-EEEEEeCCC
Confidence            9999999999998 66777776655 6899999999999976554          667889999999998 999999999


Q ss_pred             CCCHHHHHHHHHHHHc
Q 036449          163 QQNVKAVFDAAIRVVL  178 (197)
Q Consensus       163 ~~~i~~l~~~i~~~~~  178 (197)
                      |.||+++|..|++.++
T Consensus       151 g~~v~e~f~~i~~~i~  166 (166)
T d1z0fa1         151 GENVEDAFLEAAKKIY  166 (166)
T ss_dssp             CTTHHHHHHHHHHHHC
T ss_pred             CCCHHHHHHHHHHHhC
Confidence            9999999999998874

>d2bcgy1 c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Ytp1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=7.6e-37  Score=213.30  Aligned_cols=168  Identities=30%  Similarity=0.601  Sum_probs=147.6

Q ss_pred             CceeEEEEEcCCCCCHHHHHHHHhhCCCCCCCCCceeeee-eEEEEECCeEEEEEEEeCCCccccccccccCcCCCcEEE
Q 036449            4 SRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNF-SANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFI   82 (197)
Q Consensus         4 ~~~~~i~v~G~~~~GKstli~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i   82 (197)
                      ...+||+|+|++|||||||+++|..+.+...+.++.+..+ ...+.+.+..+.+.+||+||+++|..++..++++++++|
T Consensus         4 ~~~~KivvvG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~~a~~~i   83 (194)
T d2bcgy1           4 DYLFKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWDTAGQERFRTITSSYYRGSHGII   83 (194)
T ss_dssp             SEEEEEEEEESTTSSHHHHHHHHHHCCCCTTCCCSSCCCEEEEEEEETTEEEEEEEECCTTTTTTTCCCGGGGTTCSEEE
T ss_pred             CEEEEEEEECCCCcCHHHHHHHHhhCCCCCCcCCccceeEEEEEEEEeeEEEEEEEEECCCchhhHHHHHHHhccCCEEE
Confidence            3569999999999999999999999999998888886655 456778889999999999999999999999999999999


Q ss_pred             EEEeCCCchhHHHHHHHHHHHHhhhC-CCCCEEEEeeCCcccCCcccccCCCCCCcccHHHHHHHHHHhCCCceEEeccC
Q 036449           83 LAFSLISKASYENVSKKWIPELKHYA-PGVPIILVGTKLDLRDDKQFFIDHPGAVPISTAQGEELRKLIGAPAYIECSSK  161 (197)
Q Consensus        83 ~v~d~~~~~s~~~~~~~~~~~i~~~~-~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~  161 (197)
                      +|||+++++++..+ ..|...+.... ++.|+++|+||+|+.+...          +..+++..++...+. .|+++||+
T Consensus        84 ~v~d~t~~~s~~~~-~~~~~~~~~~~~~~~~iilv~nK~D~~~~~~----------~~~~~~~~~~~~~~~-~~~e~SAk  151 (194)
T d2bcgy1          84 IVYDVTDQESFNGV-KMWLQEIDRYATSTVLKLLVGNKCDLKDKRV----------VEYDVAKEFADANKM-PFLETSAL  151 (194)
T ss_dssp             EEEETTCHHHHHHH-HHHHHHHHHHSCTTCEEEEEEECTTCTTTCC----------SCHHHHHHHHHHTTC-CEEECCTT
T ss_pred             EEEeCcchhhhhhH-hhhhhhhhhcccCCceEEEEEeccccccccc----------hhHHHHhhhhhccCc-ceEEEecC
Confidence            99999999999998 55655555444 7899999999999977654          678888899999988 89999999


Q ss_pred             CCCCHHHHHHHHHHHHcCCCch
Q 036449          162 TQQNVKAVFDAAIRVVLQPPKT  183 (197)
Q Consensus       162 ~~~~i~~l~~~i~~~~~~~~~~  183 (197)
                      +|.||+++|+.|++.+.+....
T Consensus       152 ~g~gi~e~f~~l~~~i~~~~~~  173 (194)
T d2bcgy1         152 DSTNVEDAFLTMARQIKESMSQ  173 (194)
T ss_dssp             TCTTHHHHHHHHHHHHHHHCCH
T ss_pred             cCccHHHHHHHHHHHHHHHhhh
Confidence            9999999999999988765444

>d1ctqa_ c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: cH-p21 Ras protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.5e-37  Score=210.73  Aligned_cols=162  Identities=35%  Similarity=0.597  Sum_probs=147.8

Q ss_pred             ceeEEEEEcCCCCCHHHHHHHHhhCCCCCCCCCceeeeeeEEEEECCeEEEEEEEeCCCccccccccccCcCCCcEEEEE
Q 036449            5 RFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILA   84 (197)
Q Consensus         5 ~~~~i~v~G~~~~GKstli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v   84 (197)
                      +.+||+++|.+|||||||+++|.++.+...+.++.+..+.......+..+.+.+||++|++.+...+..++..++++++|
T Consensus         2 ~e~Ki~viG~~~vGKTsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~iiv   81 (166)
T d1ctqa_           2 TEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCV   81 (166)
T ss_dssp             EEEEEEEEESTTSSHHHHHHHHHHCCCCCSCCCCSEEEEEEEEEETTEEEEEEEEEECCCGGGHHHHHHHHHHCSEEEEE
T ss_pred             CeeEEEEECCCCCCHHHHHHHHHhCCCCCccCCccceeeccceeeeceeeeeeeeeccCccccccchhhhhhccccccee
Confidence            35899999999999999999999999999999999888888888889999999999999999999999999999999999


Q ss_pred             EeCCCchhHHHHHHHHHHHHhhhC--CCCCEEEEeeCCcccCCcccccCCCCCCcccHHHHHHHHHHhCCCceEEeccCC
Q 036449           85 FSLISKASYENVSKKWIPELKHYA--PGVPIILVGTKLDLRDDKQFFIDHPGAVPISTAQGEELRKLIGAPAYIECSSKT  162 (197)
Q Consensus        85 ~d~~~~~s~~~~~~~~~~~i~~~~--~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~  162 (197)
                      ||++++.+++.+ ..|+..+....  ++.|+++|+||+|+....           +..++++++++.+++ +|++|||++
T Consensus        82 ~d~~~~~s~~~~-~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~-----------~~~~~~~~~~~~~~~-~~~e~Sak~  148 (166)
T d1ctqa_          82 FAINNTKSFEDI-HQYREQIKRVKDSDDVPMVLVGNKCDLAART-----------VESRQAQDLARSYGI-PYIETSAKT  148 (166)
T ss_dssp             EETTCHHHHHTH-HHHHHHHHHHHTCSSCCEEEEEECTTCSCCC-----------SCHHHHHHHHHHHTC-CEEECCTTT
T ss_pred             ecccccccHHHH-HHHHHHHHHhcCCCCCeEEEEeccccccccc-----------ccHHHHHHHHHHhCC-eEEEEcCCC
Confidence            999999999998 78988887654  579999999999986533           567889999999998 899999999


Q ss_pred             CCCHHHHHHHHHHHHcC
Q 036449          163 QQNVKAVFDAAIRVVLQ  179 (197)
Q Consensus       163 ~~~i~~l~~~i~~~~~~  179 (197)
                      |.||+++|.+|++.+.+
T Consensus       149 g~gi~e~f~~i~~~i~~  165 (166)
T d1ctqa_         149 RQGVEDAFYTLVREIRQ  165 (166)
T ss_dssp             CTTHHHHHHHHHHHHHT
T ss_pred             CcCHHHHHHHHHHHHHh
Confidence            99999999999998865

>d1yzqa1 c.37.1.8 (A:14-177) Rab6 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab6
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=4.6e-37  Score=209.08  Aligned_cols=160  Identities=33%  Similarity=0.558  Sum_probs=141.8

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhhCCCCCCCCCcee-eeeeEEEEECCeEEEEEEEeCCCccccccccccCcCCCcEEEEEE
Q 036449            7 IKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVF-DNFSANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAF   85 (197)
Q Consensus         7 ~~i~v~G~~~~GKstli~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~   85 (197)
                      +||+++|.+|||||||+++|..+.+...+.++.+ .........++..+.+.+||++|++.+...+..++.+++++++||
T Consensus         1 fKv~vvG~~~vGKTsLi~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~ilv~   80 (164)
T d1yzqa1           1 FKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTIRLQLWDTAGQERFRSLIPSYIRDSAAAVVVY   80 (164)
T ss_dssp             CEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEECSSCEEEEEEEEECCSGGGGGGHHHHHTTCSEEEEEE
T ss_pred             CEEEEECCCCcCHHHHHHHHHhCCCCCccccceeeeccceeeccCCCceeeeecccCCcchhccchHHHhhccceEEEee
Confidence            6899999999999999999999999988888875 444555666788899999999999999999999999999999999


Q ss_pred             eCCCchhHHHHHHHHHHHHhhhC-CCCCEEEEeeCCcccCCcccccCCCCCCcccHHHHHHHHHHhCCCceEEeccCCCC
Q 036449           86 SLISKASYENVSKKWIPELKHYA-PGVPIILVGTKLDLRDDKQFFIDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQQ  164 (197)
Q Consensus        86 d~~~~~s~~~~~~~~~~~i~~~~-~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~  164 (197)
                      |++++.+++.+ ..|+..+.... ++.|+++|+||+|+.+.+.          +..++++++++.+++ +|++|||++|.
T Consensus        81 d~~~~~s~~~i-~~~~~~~~~~~~~~~~iilvgnK~Dl~~~~~----------~~~~~~~~~~~~~~~-~~~e~SAk~g~  148 (164)
T d1yzqa1          81 DITNVNSFQQT-TKWIDDVRTERGSDVIIMLVGNKTDLADKRQ----------VSIEEGERKAKELNV-MFIETSAKAGY  148 (164)
T ss_dssp             ETTCHHHHHTH-HHHHHHHHHHHTTSSEEEEEEECTTCGGGCC----------SCHHHHHHHHHHTTC-EEEECCTTTCT
T ss_pred             ccccccchhhh-HhhHHHHHHhcCCCceEEEEecccchhhhhh----------hhHHHHHHHHHHcCC-EEEEecCCCCc
Confidence            99999999999 56666665544 7899999999999976554          677889999999998 89999999999


Q ss_pred             CHHHHHHHHHHHHc
Q 036449          165 NVKAVFDAAIRVVL  178 (197)
Q Consensus       165 ~i~~l~~~i~~~~~  178 (197)
                      ||+++|.+|++.+.
T Consensus       149 ~v~e~f~~i~~~l~  162 (164)
T d1yzqa1         149 NVKQLFRRVAAALP  162 (164)
T ss_dssp             THHHHHHHHHHHSC
T ss_pred             CHHHHHHHHHHhhC
Confidence            99999999999875

>d2bmea1 c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab4a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=7.5e-37  Score=209.91  Aligned_cols=165  Identities=29%  Similarity=0.537  Sum_probs=144.8

Q ss_pred             CceeEEEEEcCCCCCHHHHHHHHhhCCCCCCCCCceeeee-eEEEEECCeEEEEEEEeCCCccccccccccCcCCCcEEE
Q 036449            4 SRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNF-SANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFI   82 (197)
Q Consensus         4 ~~~~~i~v~G~~~~GKstli~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i   82 (197)
                      ...+||+++|.+|||||||++++..+.+...+.++..... ...+..++..+.+.+||+||++++..++..++.+++++|
T Consensus         3 ~~~~KI~lvG~~~vGKTsll~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i   82 (174)
T d2bmea1           3 DFLFKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGQERFRSVTRSYYRGAAGAL   82 (174)
T ss_dssp             SEEEEEEEEESTTSSHHHHHHHHHHSSCCTTCCCCSEEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHTTSTTCSEEE
T ss_pred             cEEEEEEEECCCCcCHHHHHHHHHhCCCCcccccccccceeeEEEEecCcceeEEEEECCCchhhhhhHHHHhhhCCEEE
Confidence            3458999999999999999999999999888888875554 455667788899999999999999999999999999999


Q ss_pred             EEEeCCCchhHHHHHHHHHHHHhhhC-CCCCEEEEeeCCcccCCcccccCCCCCCcccHHHHHHHHHHhCCCceEEeccC
Q 036449           83 LAFSLISKASYENVSKKWIPELKHYA-PGVPIILVGTKLDLRDDKQFFIDHPGAVPISTAQGEELRKLIGAPAYIECSSK  161 (197)
Q Consensus        83 ~v~d~~~~~s~~~~~~~~~~~i~~~~-~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~  161 (197)
                      +|+|.++++++..+ ..|...+.... ++.|+++|+||+|+.....          ...+++..+++.+++ +|+++||+
T Consensus        83 ~v~d~~~~~s~~~~-~~~~~~~~~~~~~~~piivv~nK~D~~~~~~----------~~~~~~~~~~~~~~~-~~~e~Sak  150 (174)
T d2bmea1          83 LVYDITSRETYNAL-TNWLTDARMLASQNIVIILCGNKKDLDADRE----------VTFLEASRFAQENEL-MFLETSAL  150 (174)
T ss_dssp             EEEETTCHHHHHTH-HHHHHHHHHHSCTTCEEEEEEECGGGGGGCC----------SCHHHHHHHHHHTTC-EEEECCTT
T ss_pred             EEEecccchhHHHH-hhhhcccccccCCceEEEEEEecccccchhc----------hhhhHHHHHHHhCCC-EEEEeeCC
Confidence            99999999999998 66666666554 7899999999999976554          667888899999998 89999999


Q ss_pred             CCCCHHHHHHHHHHHHcCC
Q 036449          162 TQQNVKAVFDAAIRVVLQP  180 (197)
Q Consensus       162 ~~~~i~~l~~~i~~~~~~~  180 (197)
                      +|.|++++|.++++.+.++
T Consensus       151 ~~~gi~e~f~~l~~~i~~~  169 (174)
T d2bmea1         151 TGENVEEAFVQCARKILNK  169 (174)
T ss_dssp             TCTTHHHHHHHHHHHHHHH
T ss_pred             CCcCHHHHHHHHHHHHHHH
Confidence            9999999999999998754

>d1i2ma_ c.37.1.8 (A:) Ran {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ran
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=3.2e-38  Score=215.97  Aligned_cols=163  Identities=30%  Similarity=0.498  Sum_probs=137.4

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHhhCCCCCCCCCcee-eeeeEEEEECCeEEEEEEEeCCCccccccccccCcCCCcEEEEE
Q 036449            6 FIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVF-DNFSANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILA   84 (197)
Q Consensus         6 ~~~i~v~G~~~~GKstli~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v   84 (197)
                      .+||+++|.+|||||||++++..+.+...+.+|.+ +........++..+.+.+||++|++.+..++..++++++++++|
T Consensus         3 ~~Ki~vvG~~~vGKTsli~~~~~~~f~~~~~~Ti~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~ilv   82 (170)
T d1i2ma_           3 QFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQEKFGGLRDGYYIQAQCAIIM   82 (170)
T ss_dssp             EEEEEEEECTTSSHHHHHHTTC-----CCEEEETTEEEEEEEECBTTCCEEEEEEECTTHHHHSSCGGGGTTTCCEEEEE
T ss_pred             eEEEEEECCCCcCHHHHHHHHHhCCCCcccccceeccccccccccccccccccccccccccccceecchhcccccchhhc
Confidence            58999999999999999999999999988888886 44455666778889999999999999999999999999999999


Q ss_pred             EeCCCchhHHHHHHHHHHHHhhhCCCCCEEEEeeCCcccCCcccccCCCCCCcccHHHHHHHHHHhCCCceEEeccCCCC
Q 036449           85 FSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQQ  164 (197)
Q Consensus        85 ~d~~~~~s~~~~~~~~~~~i~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~  164 (197)
                      ||++++++++.+ ..|+..+....+++|+++|+||+|+.....            .+++..++...+. +|+++||++|.
T Consensus        83 ~d~~~~~Sf~~~-~~~~~~~~~~~~~~piilvgnK~Dl~~~~~------------~~~~~~~~~~~~~-~~~e~Sak~~~  148 (170)
T d1i2ma_          83 FDVTSRVTYKNV-PNWHRDLVRVCENIPIVLCGNKVDIKDRKV------------KAKSIVFHRKKNL-QYYDISAKSNY  148 (170)
T ss_dssp             EETTSGGGGTTH-HHHHHHHHHHHCSCCEEEEEECCCCSCSCC------------TTTSHHHHSSCSS-EEEEEBTTTTB
T ss_pred             cccccccccchh-HHHHHHHhhccCCCceeeecchhhhhhhhh------------hhHHHHHHHHcCC-EEEEEeCCCCC
Confidence            999999999999 778888777678999999999999976542            2344577778887 89999999999


Q ss_pred             CHHHHHHHHHHHHcCCCc
Q 036449          165 NVKAVFDAAIRVVLQPPK  182 (197)
Q Consensus       165 ~i~~l~~~i~~~~~~~~~  182 (197)
                      |++++|.+|++.+...+.
T Consensus       149 ~v~e~f~~l~~~l~~~~~  166 (170)
T d1i2ma_         149 NFEKPFLWLARKLIGDPN  166 (170)
T ss_dssp             TTTHHHHHHHHHHHTCTT
T ss_pred             CHHHHHHHHHHHHccCCC
Confidence            999999999998876543

>d2a5ja1 c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab2b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=8.2e-37  Score=209.52  Aligned_cols=163  Identities=27%  Similarity=0.554  Sum_probs=139.7

Q ss_pred             ceeEEEEEcCCCCCHHHHHHHHhhCCCCCCCCCcee-eeeeEEEEECCeEEEEEEEeCCCccccccccccCcCCCcEEEE
Q 036449            5 RFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVF-DNFSANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFIL   83 (197)
Q Consensus         5 ~~~~i~v~G~~~~GKstli~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~   83 (197)
                      ..+||+|+|++|||||||++++.++.+...+.++.. ..........+..+.+.+||++|++.+..++..++..+|++|+
T Consensus         2 y~~KivvvG~~~vGKTsli~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~d~~il   81 (173)
T d2a5ja1           2 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVNIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGALL   81 (173)
T ss_dssp             EEEEEEEESSTTSSHHHHHHHHHHSCCCC-----CCSSEEEEEEEETTEEEEEEEECCTTGGGTSCCCHHHHTTCSEEEE
T ss_pred             eeEEEEEECCCCcCHHHHHHHHhcCCCCCCcccceeeccceeeeeeeeeEEEEEeecccCccchhhHHHHHhhccCEEEE
Confidence            458999999999999999999999998888777764 4445556677888999999999999999999999999999999


Q ss_pred             EEeCCCchhHHHHHHHHHHHHhhhC-CCCCEEEEeeCCcccCCcccccCCCCCCcccHHHHHHHHHHhCCCceEEeccCC
Q 036449           84 AFSLISKASYENVSKKWIPELKHYA-PGVPIILVGTKLDLRDDKQFFIDHPGAVPISTAQGEELRKLIGAPAYIECSSKT  162 (197)
Q Consensus        84 v~d~~~~~s~~~~~~~~~~~i~~~~-~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~  162 (197)
                      |||++++++++.+ ..|+..+.... ++.|+++|+||+|+...+.          ...+++..+++..++ +|+++||++
T Consensus        82 v~d~~~~~sf~~~-~~~~~~~~~~~~~~~piilv~nK~D~~~~~~----------~~~~~~~~~a~~~~~-~~~e~Sa~t  149 (173)
T d2a5ja1          82 VYDITRRETFNHL-TSWLEDARQHSSSNMVIMLIGNKSDLESRRD----------VKREEGEAFAREHGL-IFMETSAKT  149 (173)
T ss_dssp             EEETTCHHHHHTH-HHHHHHHHHHSCTTCEEEEEEECTTCGGGCC----------SCHHHHHHHHHHHTC-EEEEECTTT
T ss_pred             EEeecChHHHHhH-HHHHHHHHHhCCCCCeEEEEecCCchhhhhh----------hHHHHHHHHHHHcCC-EEEEecCCC
Confidence            9999999999999 56666666655 7899999999999876554          677889999999998 899999999


Q ss_pred             CCCHHHHHHHHHHHHcC
Q 036449          163 QQNVKAVFDAAIRVVLQ  179 (197)
Q Consensus       163 ~~~i~~l~~~i~~~~~~  179 (197)
                      |.||+++|.++++.+.+
T Consensus       150 g~~V~e~f~~i~~~i~~  166 (173)
T d2a5ja1         150 ACNVEEAFINTAKEIYR  166 (173)
T ss_dssp             CTTHHHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHH
Confidence            99999999999998764

>d1r2qa_ c.37.1.8 (A:) Rab5a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab5a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.2e-36  Score=206.86  Aligned_cols=162  Identities=30%  Similarity=0.562  Sum_probs=143.6

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHhhCCCCCCCCCceeeee-eEEEEECCeEEEEEEEeCCCccccccccccCcCCCcEEEEE
Q 036449            6 FIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNF-SANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILA   84 (197)
Q Consensus         6 ~~~i~v~G~~~~GKstli~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v   84 (197)
                      .+||+++|.+|||||||+++|..+.+...+.++.+..+ .......+..+.+.+||++|++.+...+..++++++++++|
T Consensus         6 ~~Ki~vvG~~~vGKTsLi~~l~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~ilv   85 (170)
T d1r2qa_           6 QFKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAAIVV   85 (170)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGHHHHHTTCSEEEEE
T ss_pred             EEEEEEECCCCcCHHHHHHHHHhCCCCcccccccccccccceeeccceEEEEEeccCCCchhhhhhHHHHhhCcceEEEE
Confidence            58999999999999999999999999988888886554 45566778889999999999999999999999999999999


Q ss_pred             EeCCCchhHHHHHHHHHHHHhhh-CCCCCEEEEeeCCcccCCcccccCCCCCCcccHHHHHHHHHHhCCCceEEeccCCC
Q 036449           85 FSLISKASYENVSKKWIPELKHY-APGVPIILVGTKLDLRDDKQFFIDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQ  163 (197)
Q Consensus        85 ~d~~~~~s~~~~~~~~~~~i~~~-~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~  163 (197)
                      ||++++++++.+ ..|...+... .++.|+++|+||+|+...+.          ++.++++.+++..++ +|++|||++|
T Consensus        86 ~d~~~~~s~~~~-~~~~~~~~~~~~~~~~iilvgnK~Dl~~~~~----------v~~e~~~~~~~~~~~-~~~e~SAk~g  153 (170)
T d1r2qa_          86 YDITNEESFARA-KNWVKELQRQASPNIVIALSGNKADLANKRA----------VDFQEAQSYADDNSL-LFMETSAKTS  153 (170)
T ss_dssp             EETTCHHHHHHH-HHHHHHHHHHSCTTCEEEEEEECGGGGGGCC----------SCHHHHHHHHHHTTC-EEEECCTTTC
T ss_pred             eccchhhHHHHH-HHHhhhhhhccCCCceEEeeccccccccccc----------ccHHHHHHHHHhcCC-EEEEeeCCCC
Confidence            999999999998 5565555544 47999999999999977654          788999999999998 8999999999


Q ss_pred             CCHHHHHHHHHHHHcC
Q 036449          164 QNVKAVFDAAIRVVLQ  179 (197)
Q Consensus       164 ~~i~~l~~~i~~~~~~  179 (197)
                      .||+++|..|++.+.+
T Consensus       154 ~~V~e~f~~l~~~i~~  169 (170)
T d1r2qa_         154 MNVNEIFMAIAKKLPK  169 (170)
T ss_dssp             TTHHHHHHHHHHTSCC
T ss_pred             CCHHHHHHHHHHHHhh
Confidence            9999999999988765

>d2fu5c1 c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab8a
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=5.8e-37  Score=210.26  Aligned_cols=164  Identities=30%  Similarity=0.604  Sum_probs=115.2

Q ss_pred             CceeEEEEEcCCCCCHHHHHHHHhhCCCCCCCCCcee-eeeeEEEEECCeEEEEEEEeCCCccccccccccCcCCCcEEE
Q 036449            4 SRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVF-DNFSANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFI   82 (197)
Q Consensus         4 ~~~~~i~v~G~~~~GKstli~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i   82 (197)
                      .+.+||+++|.+|||||||++++..+.+...+.++.+ ......+.+++..+.+.+||+||++.+..++..+++.+|++|
T Consensus         4 ~~~~Ki~vvG~~~vGKTsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~G~e~~~~~~~~~~~~~~~~i   83 (173)
T d2fu5c1           4 DYLFKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGIM   83 (173)
T ss_dssp             SEEEEEEEECCCCC----------------CHHHHHCEEEEEEEEEETTEEEEEEEEEC---------CCTTTTTCSEEE
T ss_pred             cEEEEEEEECCCCcCHHHHHHHHHhCCCCCccCccccceEEEEEEEECCEEEEEEEEECCCchhhHHHHHHhccCCCEEE
Confidence            4568999999999999999999999998888777775 444567778888999999999999999999999999999999


Q ss_pred             EEEeCCCchhHHHHHHHHHHHHhhhC-CCCCEEEEeeCCcccCCcccccCCCCCCcccHHHHHHHHHHhCCCceEEeccC
Q 036449           83 LAFSLISKASYENVSKKWIPELKHYA-PGVPIILVGTKLDLRDDKQFFIDHPGAVPISTAQGEELRKLIGAPAYIECSSK  161 (197)
Q Consensus        83 ~v~d~~~~~s~~~~~~~~~~~i~~~~-~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~  161 (197)
                      +|||++++.++..+ ..|...+.... ++.|+++|+||.|+.....          ...+++..++...++ +|++|||+
T Consensus        84 ~v~d~~~~~s~~~~-~~~~~~~~~~~~~~~~iilv~~k~D~~~~~~----------~~~~~~~~~~~~~~~-~~~e~Sa~  151 (173)
T d2fu5c1          84 LVYDITNEKSFDNI-RNWIRNIEEHASADVEKMILGNKCDVNDKRQ----------VSKERGEKLALDYGI-KFMETSAK  151 (173)
T ss_dssp             EEEETTCHHHHHHH-HHHHHHHHHHSCTTCEEEEEEEC--CCSCCC----------SCHHHHHHHHHHHTC-EEEECCC-
T ss_pred             EEEECCChhhHHHH-HHHHHHhhhhccCCceEEEEEecccchhhcc----------cHHHHHHHHHHhcCC-EEEEEeCC
Confidence            99999999999998 66666666544 7899999999999987654          566778899999998 89999999


Q ss_pred             CCCCHHHHHHHHHHHHcC
Q 036449          162 TQQNVKAVFDAAIRVVLQ  179 (197)
Q Consensus       162 ~~~~i~~l~~~i~~~~~~  179 (197)
                      +|.||+++|++|++.+..
T Consensus       152 ~g~gv~e~f~~l~~~i~~  169 (173)
T d2fu5c1         152 ANINVENAFFTLARDIKA  169 (173)
T ss_dssp             --CCHHHHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHH
Confidence            999999999999998843

>d2g6ba1 c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab26
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.1e-35  Score=203.27  Aligned_cols=163  Identities=31%  Similarity=0.502  Sum_probs=131.7

Q ss_pred             ceeEEEEEcCCCCCHHHHHHHHhhCCCCCCCCCc-ee-eeeeEEEEECCeEEEEEEEeCCCccccccccccCcCCCcEEE
Q 036449            5 RFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPT-VF-DNFSANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFI   82 (197)
Q Consensus         5 ~~~~i~v~G~~~~GKstli~~~~~~~~~~~~~~~-~~-~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i   82 (197)
                      ..+||+++|+++||||||++++..+.+...+.++ .+ +.....+..++..+.+.+|||||++.+..++..+++++|+++
T Consensus         5 ~~fKi~vvG~~~vGKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~~~d~~i   84 (170)
T d2g6ba1           5 VAFKVMLVGDSGVGKTCLLVRFKDGAFLAGTFISTVGIDFRNKVLDVDGVKVKLQMWDTAGQERFRSVTHAYYRDAHALL   84 (170)
T ss_dssp             EEEEEEEECSTTSSHHHHHHHHHHSCCCCCCCCCCCSCEEEEEEEEETTEEEEEEEEECCCC--------CCGGGCSEEE
T ss_pred             eEEEEEEECCCCcCHHHHHHHHHhCCCCcccccceeeeeeEEEEEEecCcEEEEEEEECCCchhhHHHHHHhhcCCceeE
Confidence            4589999999999999999999999876554443 33 444556778888899999999999999999999999999999


Q ss_pred             EEEeCCCchhHHHHHHHHHHHHhhhCCCCCEEEEeeCCcccCCcccccCCCCCCcccHHHHHHHHHHhCCCceEEeccCC
Q 036449           83 LAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPISTAQGEELRKLIGAPAYIECSSKT  162 (197)
Q Consensus        83 ~v~d~~~~~s~~~~~~~~~~~i~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~  162 (197)
                      +|||+++++++..+...|........+..|+++|+||.|+.....          ++.+++..+++.+++ +|+++||++
T Consensus        85 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iilv~~k~d~~~~~~----------v~~~~~~~~~~~~~~-~~~e~Sak~  153 (170)
T d2g6ba1          85 LLYDVTNKASFDNIQAWLTEIHEYAQHDVALMLLGNKVDSAHERV----------VKREDGEKLAKEYGL-PFMETSAKT  153 (170)
T ss_dssp             EEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECCSTTSCCC----------SCHHHHHHHHHHHTC-CEEECCTTT
T ss_pred             EEecCCcccchhhhhhhhhhhhhccCCCceEEEEEeeechhhccc----------ccHHHHHHHHHHcCC-EEEEEeCCC
Confidence            999999999999994444444444446889999999999977654          778899999999998 899999999


Q ss_pred             CCCHHHHHHHHHHHHc
Q 036449          163 QQNVKAVFDAAIRVVL  178 (197)
Q Consensus       163 ~~~i~~l~~~i~~~~~  178 (197)
                      |.||+++|.+|++.+.
T Consensus       154 g~gi~e~f~~l~~~i~  169 (170)
T d2g6ba1         154 GLNVDLAFTAIAKELK  169 (170)
T ss_dssp             CTTHHHHHHHHHHHHH
T ss_pred             CcCHHHHHHHHHHHcC
Confidence            9999999999998875

>d2f9la1 c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab11b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.6e-36  Score=207.40  Aligned_cols=163  Identities=33%  Similarity=0.574  Sum_probs=140.0

Q ss_pred             ceeEEEEEcCCCCCHHHHHHHHhhCCCCCCCCCcee-eeeeEEEEECCeEEEEEEEeCCCccccccccccCcCCCcEEEE
Q 036449            5 RFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVF-DNFSANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFIL   83 (197)
Q Consensus         5 ~~~~i~v~G~~~~GKstli~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~   83 (197)
                      .-+||+++|.+|||||||++++.++.+...+.++.+ ......+.+++..+.+.+||++|++.|...+..++.+++++|+
T Consensus         3 ~~~Ki~vvG~~~vGKTsLi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~e~~~~~~~~~~~~~~~~i~   82 (175)
T d2f9la1           3 YLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQERYRRITSAYYRGAVGALL   82 (175)
T ss_dssp             EEEEEEEESSTTSSHHHHHHHHHHSCCCC---CCCSCEEEEEEEEETTEEEEEEEEECSSGGGTTCCCHHHHTTCSEEEE
T ss_pred             EEEEEEEECCCCcCHHHHHHHHHhCCCCCcccccccceeeeEEEEECCEEEEEEecccCCcHHHHHHHHHHhhccCeEEE
Confidence            458999999999999999999999999887777664 4445667788889999999999999999999999999999999


Q ss_pred             EEeCCCchhHHHHHHHHHHHHhhhC-CCCCEEEEeeCCcccCCcccccCCCCCCcccHHHHHHHHHHhCCCceEEeccCC
Q 036449           84 AFSLISKASYENVSKKWIPELKHYA-PGVPIILVGTKLDLRDDKQFFIDHPGAVPISTAQGEELRKLIGAPAYIECSSKT  162 (197)
Q Consensus        84 v~d~~~~~s~~~~~~~~~~~i~~~~-~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~  162 (197)
                      |||.++++++..+ ..|+..+.... +++|+++|+||+|+.+.+.          ...+.+..+....+. +|+++||++
T Consensus        83 v~d~~~~~S~~~~-~~~~~~i~~~~~~~~piilvgnK~Dl~~~~~----------~~~~~~~~~~~~~~~-~~~e~Sa~~  150 (175)
T d2f9la1          83 VYDIAKHLTYENV-ERWLKELRDHADSNIVIMLVGNKSDLRHLRA----------VPTDEARAFAEKNNL-SFIETSALD  150 (175)
T ss_dssp             EEETTCHHHHHTH-HHHHHHHHHHSCTTCEEEEEEECTTCGGGCC----------SCHHHHHHHHHHTTC-EEEECCTTT
T ss_pred             EEECCCcccchhH-HHHHHHHHHhcCCCCcEEEEEeeeccccccc----------chHHHHHHhhcccCc-eEEEEecCC
Confidence            9999999999999 67777777666 7899999999999976543          455666778787777 999999999


Q ss_pred             CCCHHHHHHHHHHHHcC
Q 036449          163 QQNVKAVFDAAIRVVLQ  179 (197)
Q Consensus       163 ~~~i~~l~~~i~~~~~~  179 (197)
                      |.|++++|+++++.+.+
T Consensus       151 g~~i~e~f~~l~~~i~~  167 (175)
T d2f9la1         151 STNVEEAFKNILTEIYR  167 (175)
T ss_dssp             CTTHHHHHHHHHHHHHH
T ss_pred             CcCHHHHHHHHHHHHHH
Confidence            99999999999998754

>d1ek0a_ c.37.1.8 (A:) Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ypt51
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=9.8e-36  Score=203.58  Aligned_cols=165  Identities=32%  Similarity=0.571  Sum_probs=144.4

Q ss_pred             ceeEEEEEcCCCCCHHHHHHHHhhCCCCCCCCCceeeee-eEEEEECCeEEEEEEEeCCCccccccccccCcCCCcEEEE
Q 036449            5 RFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNF-SANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFIL   83 (197)
Q Consensus         5 ~~~~i~v~G~~~~GKstli~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~   83 (197)
                      ..+||+++|.+|||||||++++..+.+...+.+|.+..+ ...+..++..+.+.+||++|++.+..++..++..+|++++
T Consensus         2 ~~iKi~vvG~~~vGKTsLi~~~~~~~f~~~~~~t~~~~~~~~~i~~~~~~~~l~i~d~~g~~~~~~~~~~~~~~~~~~il   81 (170)
T d1ek0a_           2 TSIKLVLLGEAAVGKSSIVLRFVSNDFAENKEPTIGAAFLTQRVTINEHTVKFEIWDTAGQERFASLAPMYYRNAQAALV   81 (170)
T ss_dssp             EEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGHHHHHTTCSEEEE
T ss_pred             cEEEEEEECCCCcCHHHHHHHHHhCCCCccccccccceeeccccccccccccccccccCCchhHHHHHHHHHhccceEEE
Confidence            368999999999999999999999999999999886544 5577788899999999999999999999999999999999


Q ss_pred             EEeCCCchhHHHHHHHHHHHHhhhC-CCCCEEEEeeCCcccCCcccccCCCCCCcccHHHHHHHHHHhCCCceEEeccCC
Q 036449           84 AFSLISKASYENVSKKWIPELKHYA-PGVPIILVGTKLDLRDDKQFFIDHPGAVPISTAQGEELRKLIGAPAYIECSSKT  162 (197)
Q Consensus        84 v~d~~~~~s~~~~~~~~~~~i~~~~-~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~  162 (197)
                      |||++++.+++.+ ..|...+.... +..|+++++||+|+.+...       .+.+..++++++++..++ +|+++||++
T Consensus        82 v~d~~~~~s~~~~-~~~~~~~~~~~~~~~~~~~v~nk~d~~~~~~-------~~~v~~~~~~~~~~~~~~-~~~e~Sak~  152 (170)
T d1ek0a_          82 VYDVTKPQSFIKA-RHWVKELHEQASKDIIIALVGNKIDMLQEGG-------ERKVAREEGEKLAEEKGL-LFFETSAKT  152 (170)
T ss_dssp             EEETTCHHHHHHH-HHHHHHHHHHSCTTCEEEEEEECGGGGGSSC-------CCCSCHHHHHHHHHHHTC-EEEECCTTT
T ss_pred             EEeCCcccchhhh-hhhhhhhccccccccceeeeecccccccccc-------hhhhhHHHHHHHHHHcCC-EEEEecCCC
Confidence            9999999999998 56665555544 6899999999999966432       345788999999999998 999999999


Q ss_pred             CCCHHHHHHHHHHHHc
Q 036449          163 QQNVKAVFDAAIRVVL  178 (197)
Q Consensus       163 ~~~i~~l~~~i~~~~~  178 (197)
                      |.||+++|..|++++.
T Consensus       153 g~gV~e~F~~i~~~i~  168 (170)
T d1ek0a_         153 GENVNDVFLGIGEKIP  168 (170)
T ss_dssp             CTTHHHHHHHHHTTSC
T ss_pred             CcCHHHHHHHHHHHhc
Confidence            9999999999987653

>d1ky3a_ c.37.1.8 (A:) Rab-related protein ypt7p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-related protein ypt7p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=9.9e-36  Score=204.46  Aligned_cols=166  Identities=31%  Similarity=0.568  Sum_probs=127.9

Q ss_pred             ceeEEEEEcCCCCCHHHHHHHHhhCCCCCCCCCceeeeeeEEEE--ECCeEEEEEEEeCCCccccccccccCcCCCcEEE
Q 036449            5 RFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVV--VNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFI   82 (197)
Q Consensus         5 ~~~~i~v~G~~~~GKstli~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i   82 (197)
                      +.+||+++|.+|||||||+++|.++.+...+.++.+........  .+.....+.+||++|++.+...+..+++.+++++
T Consensus         1 n~~Ki~~vG~~~vGKSsLi~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i   80 (175)
T d1ky3a_           1 NILKVIILGDSGVGKTSLMHRYVNDKYSQQYKATIGADFLTKEVTVDGDKVATMQVWDTAGQERFQSLGVAFYRGADCCV   80 (175)
T ss_dssp             CEEEEEEECCTTSSHHHHHHHHHHSCCCTTC---CCCSCEEEEECCSSSCCEEEEEECCC----------CCSTTCCEEE
T ss_pred             CeEEEEEECCCCcCHHHHHHHHHcCCCCCccCcccccceeeeeeeecCcccccceeeccCCchhhhhHHHHHhhccceEE
Confidence            35899999999999999999999999988888877554443333  2344577899999999999999999999999999


Q ss_pred             EEEeCCCchhHHHHHHHHHHHHhhhC-----CCCCEEEEeeCCcccCCcccccCCCCCCcccHHHHHHHHHHhCCCceEE
Q 036449           83 LAFSLISKASYENVSKKWIPELKHYA-----PGVPIILVGTKLDLRDDKQFFIDHPGAVPISTAQGEELRKLIGAPAYIE  157 (197)
Q Consensus        83 ~v~d~~~~~s~~~~~~~~~~~i~~~~-----~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  157 (197)
                      +|||++++.+++.+ ..|+..+....     +++|+++|+||+|+.+.+.         .++.++++++++.++..+|++
T Consensus        81 lv~d~~~~~s~~~~-~~~~~~i~~~~~~~~~~~~piilv~nK~Dl~~~~~---------~v~~~~~~~~~~~~~~~~~~e  150 (175)
T d1ky3a_          81 LVYDVTNASSFENI-KSWRDEFLVHANVNSPETFPFVILGNKIDAEESKK---------IVSEKSAQELAKSLGDIPLFL  150 (175)
T ss_dssp             EEEETTCHHHHHTH-HHHHHHHHHHHCCSCTTTCCEEEEEECTTSCGGGC---------CSCHHHHHHHHHHTTSCCEEE
T ss_pred             EEeecccccccchh-hhcchhhhhhhhhcccccCcEEEEecccchhhhhc---------chhHHHHHHHHHHcCCCeEEE
Confidence            99999999999998 78887775432     4789999999999976432         256788899999998668999


Q ss_pred             eccCCCCCHHHHHHHHHHHHcCC
Q 036449          158 CSSKTQQNVKAVFDAAIRVVLQP  180 (197)
Q Consensus       158 ~sa~~~~~i~~l~~~i~~~~~~~  180 (197)
                      |||++|.||+++|.+|++.+.++
T Consensus       151 ~SA~~g~gv~e~f~~l~~~~l~~  173 (175)
T d1ky3a_         151 TSAKNAINVDTAFEEIARSALQQ  173 (175)
T ss_dssp             EBTTTTBSHHHHHHHHHHHHHHH
T ss_pred             EeCCCCcCHHHHHHHHHHHHHhc
Confidence            99999999999999999987643

>d1x3sa1 c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab18
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=3.4e-35  Score=202.08  Aligned_cols=165  Identities=30%  Similarity=0.622  Sum_probs=145.9

Q ss_pred             ceeEEEEEcCCCCCHHHHHHHHhhCCCCCCCCCceeeee-eEEEEECCeEEEEEEEeCCCccccccccccCcCCCcEEEE
Q 036449            5 RFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNF-SANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFIL   83 (197)
Q Consensus         5 ~~~~i~v~G~~~~GKstli~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~   83 (197)
                      ..+||+++|.+|||||||++++.++.+...+.++..... ...+.+++..+.+.+||+||++++..++..++.++|++++
T Consensus         6 ~~iKi~vvG~~~vGKTsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~ii~   85 (177)
T d1x3sa1           6 TTLKILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNKAKLAIWDTAGQERFRTLTPSYYRGAQGVIL   85 (177)
T ss_dssp             EEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECSSGGGCCSHHHHHTTCCEEEE
T ss_pred             ceeEEEEECCCCcCHHHHHHHHHhCCCCCccccceeecceeEEEEEeccccEEEEEECCCchhhHHHHHHHHhcCCEEEE
Confidence            468999999999999999999999999888777775444 4567788889999999999999999999999999999999


Q ss_pred             EEeCCCchhHHHHHHHHHHHHhhhC--CCCCEEEEeeCCcccCCcccccCCCCCCcccHHHHHHHHHHhCCCceEEeccC
Q 036449           84 AFSLISKASYENVSKKWIPELKHYA--PGVPIILVGTKLDLRDDKQFFIDHPGAVPISTAQGEELRKLIGAPAYIECSSK  161 (197)
Q Consensus        84 v~d~~~~~s~~~~~~~~~~~i~~~~--~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~  161 (197)
                      |||++++.+++.+ ..|+..+....  ...|+++++||.|.....           ++.++++.+++.++. +|+++||+
T Consensus        86 v~d~~~~~s~~~~-~~~~~~i~~~~~~~~~~i~~~~nk~d~~~~~-----------v~~~~~~~~~~~~~~-~~~e~Sa~  152 (177)
T d1x3sa1          86 VYDVTRRDTFVKL-DNWLNELETYCTRNDIVNMLVGNKIDKENRE-----------VDRNEGLKFARKHSM-LFIEASAK  152 (177)
T ss_dssp             EEETTCHHHHHTH-HHHHHHHTTCCSCSCCEEEEEEECTTSSSCC-----------SCHHHHHHHHHHTTC-EEEECCTT
T ss_pred             EEECCCccccccc-hhhhhhhcccccccceeeEEEeecccccccc-----------ccHHHHHHHHHHCCC-EEEEEeCC
Confidence            9999999999998 77888777654  478999999999975432           678889999999998 89999999


Q ss_pred             CCCCHHHHHHHHHHHHcCCCc
Q 036449          162 TQQNVKAVFDAAIRVVLQPPK  182 (197)
Q Consensus       162 ~~~~i~~l~~~i~~~~~~~~~  182 (197)
                      +|.|++++|+++++.+.+++.
T Consensus       153 tg~gv~e~f~~l~~~l~~~p~  173 (177)
T d1x3sa1         153 TCDGVQCAFEELVEKIIQTPG  173 (177)
T ss_dssp             TCTTHHHHHHHHHHHHHTSGG
T ss_pred             CCCCHHHHHHHHHHHHccCcc
Confidence            999999999999999988753

>d2g3ya1 c.37.1.8 (A:73-244) GTP-binding protein GEM {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein GEM
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.6e-35  Score=202.76  Aligned_cols=162  Identities=25%  Similarity=0.447  Sum_probs=133.9

Q ss_pred             ceeEEEEEcCCCCCHHHHHHHHhhCCCCCC-CCCce-eeeeeEEEEECCeEEEEEEEeCCC---ccccccccccCcCCCc
Q 036449            5 RFIKCVTVGDGAVGKTCLLISYTSNTFPTD-YVPTV-FDNFSANVVVNGSTVNLGLWDTAG---QEDYNRLRPLSYRGAD   79 (197)
Q Consensus         5 ~~~~i~v~G~~~~GKstli~~~~~~~~~~~-~~~~~-~~~~~~~~~~~~~~~~~~i~D~~G---~~~~~~~~~~~~~~~~   79 (197)
                      ..+||+++|.+|||||||++++....+... ..+++ .+.+...+.+++..+.+.+||+++   +++|  ++..++.++|
T Consensus         2 ~~~Kv~lvG~~~vGKTsLi~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~d~~~~~g~e~~--~~~~~~~~~~   79 (172)
T d2g3ya1           2 TYYRVVLIGEQGVGKSTLANIFAGVHDSMDSDCEVLGEDTYERTLMVDGESATIILLDMWENKGENEW--LHDHCMQVGD   79 (172)
T ss_dssp             CEEEEEEECCTTSSHHHHHHHHHCCCCTTCCC---CCTTEEEEEEEETTEEEEEEEECCTTTTHHHHH--HHHCCCCCCS
T ss_pred             CEEEEEEECCCCcCHHHHHHHHHhCcCCccccccceeeecceeeeccCCceeeeeeeccccccccccc--cccccccccc
Confidence            468999999999999999999998765432 33333 456677788899999999999775   5554  4566889999


Q ss_pred             EEEEEEeCCCchhHHHHHHHHHHHHhhhC--CCCCEEEEeeCCcccCCcccccCCCCCCcccHHHHHHHHHHhCCCceEE
Q 036449           80 VFILAFSLISKASYENVSKKWIPELKHYA--PGVPIILVGTKLDLRDDKQFFIDHPGAVPISTAQGEELRKLIGAPAYIE  157 (197)
Q Consensus        80 ~~i~v~d~~~~~s~~~~~~~~~~~i~~~~--~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  157 (197)
                      ++|+|||++++++++.+ ..|...+....  +++|+++|+||+|+...+.          ++.++++.++..+++ +|++
T Consensus        80 ~~ilvfd~t~~~s~~~~-~~~~~~i~~~~~~~~~piilvgnK~Dl~~~~~----------v~~~~~~~~a~~~~~-~~~e  147 (172)
T d2g3ya1          80 AYLIVYSITDRASFEKA-SELRIQLRRARQTEDIPIILVGNKSDLVRCRE----------VSVSEGRACAVVFDC-KFIE  147 (172)
T ss_dssp             EEEEEEETTCHHHHHHH-HHHHHHHHTSGGGTTSCEEEEEECTTCGGGCC----------SCHHHHHHHHHHHTC-EEEE
T ss_pred             eeeeeecccccchhhhh-hhhhhhhhhccccCCceEEEEecccccccccc----------ccHHHHHHHHHHcCC-eEEE
Confidence            99999999999999999 67777666543  6899999999999977654          778889999999998 9999


Q ss_pred             eccCCCCCHHHHHHHHHHHHcCC
Q 036449          158 CSSKTQQNVKAVFDAAIRVVLQP  180 (197)
Q Consensus       158 ~sa~~~~~i~~l~~~i~~~~~~~  180 (197)
                      +||++|.|++++|..|++.+..+
T Consensus       148 ~Sak~g~~i~~~f~~l~~~i~~r  170 (172)
T d2g3ya1         148 TSAAVQHNVKELFEGIVRQVRLR  170 (172)
T ss_dssp             CBTTTTBSHHHHHHHHHHHHHHH
T ss_pred             EeCCCCcCHHHHHHHHHHHHHHc
Confidence            99999999999999999987543

>d1g16a_ c.37.1.8 (A:) Rab-related protein Sec4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-related protein Sec4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=2.2e-35  Score=201.07  Aligned_cols=161  Identities=32%  Similarity=0.657  Sum_probs=136.5

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHhhCCCCCCCCCceeeee-eEEEEECCeEEEEEEEeCCCccccccccccCcCCCcEEEEE
Q 036449            6 FIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNF-SANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILA   84 (197)
Q Consensus         6 ~~~i~v~G~~~~GKstli~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v   84 (197)
                      .+||+++|.+|||||||++++..+.+...+.+|.+..+ ...+.+++..+.+.+||+||++.+..++..++++++++++|
T Consensus         2 ~~Ki~vvG~~~vGKTSli~~l~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i~v   81 (166)
T d1g16a_           2 IMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQIWDTAGQERFRTITTAYYRGAMGIILV   81 (166)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHHCCCCC-------CCEEEEEEESSSCEEEEEEECCTTGGGTSCCCHHHHTTEEEEEEE
T ss_pred             EEEEEEECCCCcCHHHHHHHHHhCCCCCccCCccceeEEEEEEEECCEEEEEEEEECCCchhhHHHHHHHHhcCCEEEEE
Confidence            58999999999999999999999999998888886544 56777888899999999999999999999999999999999


Q ss_pred             EeCCCchhHHHHHHHHHHHHhhhC-CCCCEEEEeeCCcccCCcccccCCCCCCcccHHHHHHHHHHhCCCceEEeccCCC
Q 036449           85 FSLISKASYENVSKKWIPELKHYA-PGVPIILVGTKLDLRDDKQFFIDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQ  163 (197)
Q Consensus        85 ~d~~~~~s~~~~~~~~~~~i~~~~-~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~  163 (197)
                      ||.+++++++.+ ..|...+.... +..|++++++|.|+....           ...++++.++..++. +|++|||++|
T Consensus        82 ~d~~~~~s~~~~-~~~~~~~~~~~~~~~~~i~~~~k~d~~~~~-----------~~~~~~~~~~~~~~~-~~~~~Sa~~~  148 (166)
T d1g16a_          82 YDITDERTFTNI-KQWFKTVNEHANDEAQLLLVGNKSDMETRV-----------VTADQGEALAKELGI-PFIESSAKND  148 (166)
T ss_dssp             EETTCHHHHHTH-HHHHHHHHHHSCTTCEEEEEEECTTCTTCC-----------SCHHHHHHHHHHHTC-CEEECBTTTT
T ss_pred             EECCCccCHHHH-HhhhhhhhccccCcceeeeecchhhhhhhh-----------hhHHHHHHHHHhcCC-eEEEECCCCC
Confidence            999999999998 56655555555 678899999999986644           567889999999998 9999999999


Q ss_pred             CCHHHHHHHHHHHHcC
Q 036449          164 QNVKAVFDAAIRVVLQ  179 (197)
Q Consensus       164 ~~i~~l~~~i~~~~~~  179 (197)
                      .|++++|++|++.+.+
T Consensus       149 ~~v~e~f~~l~~~i~~  164 (166)
T d1g16a_         149 DNVNEIFFTLAKLIQE  164 (166)
T ss_dssp             BSHHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHh
Confidence            9999999999998754

>d2f7sa1 c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab27b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.8e-36  Score=210.15  Aligned_cols=163  Identities=37%  Similarity=0.633  Sum_probs=139.8

Q ss_pred             ceeEEEEEcCCCCCHHHHHHHHhhCCCCCCCCCceeeee-eEEEEEC----------CeEEEEEEEeCCCcccccccccc
Q 036449            5 RFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNF-SANVVVN----------GSTVNLGLWDTAGQEDYNRLRPL   73 (197)
Q Consensus         5 ~~~~i~v~G~~~~GKstli~~~~~~~~~~~~~~~~~~~~-~~~~~~~----------~~~~~~~i~D~~G~~~~~~~~~~   73 (197)
                      ..+||+++|++|||||||+++|.++.+...+.++....+ ...+.++          +..+.+.+||++|+++|..++..
T Consensus         4 ~~~Ki~ivG~~~vGKTsLi~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~dt~G~e~~~~~~~~   83 (186)
T d2f7sa1           4 YLIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYNAQGPNGSSGKAFKVHLQLWDTAGQERFRSLTTA   83 (186)
T ss_dssp             EEEEEEEESCTTSSHHHHHHHHHCSCCCCEEEEEEEEEEEEEEEEEEC-------CCEEEEEEEEEEEESHHHHHHHHHH
T ss_pred             EEEEEEEECCCCcCHHHHHHHHhcCCCCCccCCcccceeeEEEEEEecccccccccccceEEeccccCCcchhhHHHHHH
Confidence            458999999999999999999999998888777765443 3333332          23578999999999999999999


Q ss_pred             CcCCCcEEEEEEeCCCchhHHHHHHHHHHHHhhhC--CCCCEEEEeeCCcccCCcccccCCCCCCcccHHHHHHHHHHhC
Q 036449           74 SYRGADVFILAFSLISKASYENVSKKWIPELKHYA--PGVPIILVGTKLDLRDDKQFFIDHPGAVPISTAQGEELRKLIG  151 (197)
Q Consensus        74 ~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~i~~~~--~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  151 (197)
                      ++.++|++|+|||++++.+++.+ ..|+..+....  ++.|+++|+||+|+...+.          ++.+++.++++.++
T Consensus        84 ~~~~~~~~i~v~d~~~~~s~~~~-~~~~~~~~~~~~~~~~~iilv~nK~Dl~~~~~----------v~~~e~~~~~~~~~  152 (186)
T d2f7sa1          84 FFRDAMGFLLMFDLTSQQSFLNV-RNWMSQLQANAYCENPDIVLIGNKADLPDQRE----------VNERQARELADKYG  152 (186)
T ss_dssp             HHTTCCEEEEEEETTCHHHHHHH-HHHHHTCCCCCTTTCCEEEEEEECTTCGGGCC----------SCHHHHHHHHHHTT
T ss_pred             HHhcCCEEEEEEeccccccceee-eeccchhhhhccCCCceEEEEeeeccchhhhc----------chHHHHHHHHHHcC
Confidence            99999999999999999999998 67877666544  5789999999999977654          78889999999999


Q ss_pred             CCceEEeccCCCCCHHHHHHHHHHHHcC
Q 036449          152 APAYIECSSKTQQNVKAVFDAAIRVVLQ  179 (197)
Q Consensus       152 ~~~~~~~sa~~~~~i~~l~~~i~~~~~~  179 (197)
                      + +|+++||++|.||+++|++|++.+.+
T Consensus       153 ~-~~~e~Sak~~~~i~e~f~~l~~~i~~  179 (186)
T d2f7sa1         153 I-PYFETSAATGQNVEKAVETLLDLIMK  179 (186)
T ss_dssp             C-CEEEEBTTTTBTHHHHHHHHHHHHHH
T ss_pred             C-EEEEEeCCCCCCHHHHHHHHHHHHHH
Confidence            8 89999999999999999999998864

>d1wmsa_ c.37.1.8 (A:) Rab9a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab9a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.2e-34  Score=198.86  Aligned_cols=164  Identities=37%  Similarity=0.656  Sum_probs=139.4

Q ss_pred             CceeEEEEEcCCCCCHHHHHHHHhhCCCCCCCCCceeeee-eEEEEECCeEEEEEEEeCCCccccccccccCcCCCcEEE
Q 036449            4 SRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNF-SANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFI   82 (197)
Q Consensus         4 ~~~~~i~v~G~~~~GKstli~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i   82 (197)
                      .+.+||+|+|.+|||||||++++..+.+...+.+|.+... ......++..+.+.+||++|+..+...+..++..+++++
T Consensus         4 ~~~~KI~vvG~~~vGKSSli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i   83 (174)
T d1wmsa_           4 SSLFKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTMQIWDTAGQERFRSLRTPFYRGSDCCL   83 (174)
T ss_dssp             EEEEEEEEECCTTSSHHHHHHHHHHSCCCC----CCSEEEEEEEEEETTEEEEEEEEECCCCGGGHHHHGGGGTTCSEEE
T ss_pred             CceEEEEEECCCCCCHHHHHHHHHhCCCCCccccceeeeeeeeeeeecCceeeEeeecccCcceehhhhhhhhhccceEE
Confidence            3568999999999999999999999999988888885554 556667888899999999999999999999999999999


Q ss_pred             EEEeCCCchhHHHHHHHHHHHHhhhC-----CCCCEEEEeeCCcccCCcccccCCCCCCcccHHHHHHHHHHhCCCceEE
Q 036449           83 LAFSLISKASYENVSKKWIPELKHYA-----PGVPIILVGTKLDLRDDKQFFIDHPGAVPISTAQGEELRKLIGAPAYIE  157 (197)
Q Consensus        83 ~v~d~~~~~s~~~~~~~~~~~i~~~~-----~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  157 (197)
                      +++|.+++.+++.+ ..|++.+....     ++.|+++|+||+|+.+. .          ++.+++++++++++..+|++
T Consensus        84 ~~~d~~~~~s~~~~-~~~~~~i~~~~~~~~~~~~piilVgnK~Dl~~~-~----------v~~~~~~~~~~~~~~~~~~e  151 (174)
T d1wmsa_          84 LTFSVDDSQSFQNL-SNWKKEFIYYADVKEPESFPFVILGNKIDISER-Q----------VSTEEAQAWCRDNGDYPYFE  151 (174)
T ss_dssp             EEEETTCHHHHHTH-HHHHHHHHHHHTCSCTTTSCEEEEEECTTCSSC-S----------SCHHHHHHHHHHTTCCCEEE
T ss_pred             EEEeeecccccchh-hhHHHHHHHHhccccCCCceEEEeccccchhhc-c----------CcHHHHHHHHHHcCCCeEEE
Confidence            99999999999998 67887765432     47899999999999643 2          67889999999887558999


Q ss_pred             eccCCCCCHHHHHHHHHHHHcC
Q 036449          158 CSSKTQQNVKAVFDAAIRVVLQ  179 (197)
Q Consensus       158 ~sa~~~~~i~~l~~~i~~~~~~  179 (197)
                      |||++|.||+++|+++++.+..
T Consensus       152 ~Sak~~~gI~e~f~~l~~~il~  173 (174)
T d1wmsa_         152 TSAKDATNVAAAFEEAVRRVLA  173 (174)
T ss_dssp             CCTTTCTTHHHHHHHHHHHHHT
T ss_pred             EcCCCCcCHHHHHHHHHHHHhc
Confidence            9999999999999999998764

>d1z06a1 c.37.1.8 (A:32-196) Rab-33b {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-33b
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=1.3e-34  Score=197.06  Aligned_cols=158  Identities=31%  Similarity=0.580  Sum_probs=137.3

Q ss_pred             ceeEEEEEcCCCCCHHHHHHHHhhCCCCCCCCCceeeee-eEEEEECCeEEEEEEEeCCCcccccc-ccccCcCCCcEEE
Q 036449            5 RFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNF-SANVVVNGSTVNLGLWDTAGQEDYNR-LRPLSYRGADVFI   82 (197)
Q Consensus         5 ~~~~i~v~G~~~~GKstli~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~D~~G~~~~~~-~~~~~~~~~~~~i   82 (197)
                      +.+||+++|.+|||||||++++..+.+...+.++.+... .....+......+.+||++|.+.+.. .+..++.++|++|
T Consensus         1 r~~Kv~liG~~~vGKTsLl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i   80 (165)
T d1z06a1           1 RIFKIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDIDGERIKIQLWDTAGQERFRKSMVQHYYRNVHAVV   80 (165)
T ss_dssp             CEEEEEEECCTTSSHHHHHHHHHHSSCCSSCCCCCSCCEEEEEEEETTEEEEEEEEECCCSHHHHTTTHHHHHTTCCEEE
T ss_pred             CEEEEEEECCCCcCHHHHHHHHHhCCCCCccCcccccccceeeeeeeccceEEEEEeccCchhhccccceeeecCCCceE
Confidence            568999999999999999999999999988888886555 45677788889999999999877654 5677899999999


Q ss_pred             EEEeCCCchhHHHHHHHHHHHHhhhC--CCCCEEEEeeCCcccCCcccccCCCCCCcccHHHHHHHHHHhCCCceEEecc
Q 036449           83 LAFSLISKASYENVSKKWIPELKHYA--PGVPIILVGTKLDLRDDKQFFIDHPGAVPISTAQGEELRKLIGAPAYIECSS  160 (197)
Q Consensus        83 ~v~d~~~~~s~~~~~~~~~~~i~~~~--~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa  160 (197)
                      +|||++++++++.+ ..|+..+....  +++|+++||||+|+.+.+.          ++.++++++++.+++ +|++|||
T Consensus        81 lv~d~~~~~s~~~~-~~~~~~i~~~~~~~~~pi~lvgnK~Dl~~~~~----------v~~~~~~~~~~~~~~-~~~e~SA  148 (165)
T d1z06a1          81 FVYDMTNMASFHSL-PAWIEECKQHLLANDIPRILVGNKCDLRSAIQ----------VPTDLAQKFADTHSM-PLFETSA  148 (165)
T ss_dssp             EEEETTCHHHHHTH-HHHHHHHHHHCCCSCCCEEEEEECTTCGGGCC----------SCHHHHHHHHHHTTC-CEEECCS
T ss_pred             EEEEeehhhhhhhh-hhhhHHHHhhccCCCCeEEEEeccccchhccc----------hhHHHHHHHHHHCCC-EEEEEec
Confidence            99999999999998 77887776654  6899999999999987654          788999999999998 8999999


Q ss_pred             CC---CCCHHHHHHHHH
Q 036449          161 KT---QQNVKAVFDAAI  174 (197)
Q Consensus       161 ~~---~~~i~~l~~~i~  174 (197)
                      ++   ++||+++|.+|+
T Consensus       149 kt~~~~~~V~e~F~~lA  165 (165)
T d1z06a1         149 KNPNDNDHVEAIFMTLA  165 (165)
T ss_dssp             SSGGGGSCHHHHHHHHC
T ss_pred             ccCCcCcCHHHHHHHhC
Confidence            97   459999999873

>d1vg8a_ c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab7
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=100.00  E-value=2.6e-34  Score=198.84  Aligned_cols=167  Identities=29%  Similarity=0.538  Sum_probs=142.3

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHhhCCCCCCCCCceee-eeeEEEEECCeEEEEEEEeCCCccccccccccCcCCCcEEEEE
Q 036449            6 FIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFD-NFSANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILA   84 (197)
Q Consensus         6 ~~~i~v~G~~~~GKstli~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v   84 (197)
                      -+||+|+|.+|||||||++++.++.+...+.+|.+. .........+..+.+.+||++|+..+...+..++..+++++++
T Consensus         2 ~~Kv~vvG~~~vGKSSLi~~l~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~~   81 (184)
T d1vg8a_           2 LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQERFQSLGVAFYRGADCCVLV   81 (184)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEESSSCEEEEEEEEECSSGGGSCSCCGGGTTCSEEEEE
T ss_pred             EEEEEEECCCCcCHHHHHHHHHhCCCCCCcCCccceeeeeeeeeeCCceEEEEeeecCCcccccccccccccCccEEEEe
Confidence            379999999999999999999999999998888854 4455666778889999999999999999999999999999999


Q ss_pred             EeCCCchhHHHHHHHHHHHHhhhC-----CCCCEEEEeeCCcccCCcccccCCCCCCcccHHHHHHHHHHhCCCceEEec
Q 036449           85 FSLISKASYENVSKKWIPELKHYA-----PGVPIILVGTKLDLRDDKQFFIDHPGAVPISTAQGEELRKLIGAPAYIECS  159 (197)
Q Consensus        85 ~d~~~~~s~~~~~~~~~~~i~~~~-----~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s  159 (197)
                      +|.++..+++.+ ..|++.+....     .+.|+++|+||+|+.+..           +..++...++...+..+|++||
T Consensus        82 ~d~~~~~~~~~~-~~~~~~i~~~~~~~~~~~ip~ilv~nK~Dl~~~~-----------~~~~~~~~~~~~~~~~~~~e~S  149 (184)
T d1vg8a_          82 FDVTAPNTFKTL-DSWRDEFLIQASPRDPENFPFVVLGNKIDLENRQ-----------VATKRAQAWCYSKNNIPYFETS  149 (184)
T ss_dssp             EETTCHHHHHTH-HHHHHHHHHHHCCSSGGGSCEEEEEECTTSSCCC-----------SCHHHHHHHHHHTTSCCEEECB
T ss_pred             ecccchhhhhcc-hhhHHHHHHHhccccccCCCEEEEEEeecccccc-----------hhHHHHHHHHHHhcCCeEEEEc
Confidence            999999999998 78887765542     368999999999986543           5666777777665545999999


Q ss_pred             cCCCCCHHHHHHHHHHHHcCCCchh
Q 036449          160 SKTQQNVKAVFDAAIRVVLQPPKTK  184 (197)
Q Consensus       160 a~~~~~i~~l~~~i~~~~~~~~~~~  184 (197)
                      |++|.||+++|+++++.+.+++.+.
T Consensus       150 ak~~~gI~e~f~~l~~~i~~~~~~~  174 (184)
T d1vg8a_         150 AKEAINVEQAFQTIARNALKQETEV  174 (184)
T ss_dssp             TTTTBSHHHHHHHHHHHHHHHHHHH
T ss_pred             CCCCcCHHHHHHHHHHHHHhccccc
Confidence            9999999999999999887765444

>d2bmja1 c.37.1.8 (A:66-240) Centaurin gamma 1, G domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Centaurin gamma 1, G domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.9e-34  Score=197.62  Aligned_cols=164  Identities=22%  Similarity=0.314  Sum_probs=136.5

Q ss_pred             ceeEEEEEcCCCCCHHHHHHHHhhCCCCCCCCCceeeeeeEEEEECCeEEEEEEEeCCCccccccccccCcCCCcEEEEE
Q 036449            5 RFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILA   84 (197)
Q Consensus         5 ~~~~i~v~G~~~~GKstli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v   84 (197)
                      +.+||+++|.+|||||||++++..+.+.. +.++....+...+.+++..+.+.+||++|+..+.     +++++|++|+|
T Consensus         4 p~~ki~vlG~~~vGKTsLi~~~~~~~f~~-~~~t~~~~~~~~i~v~~~~~~l~i~Dt~g~~~~~-----~~~~ad~~ilV   77 (175)
T d2bmja1           4 PELRLGVLGDARSGKSSLIHRFLTGSYQV-LEKTESEQYKKEMLVDGQTHLVLIREEAGAPDAK-----FSGWADAVIFV   77 (175)
T ss_dssp             CEEEEEEECCTTTTHHHHHHHHHHSCCCC-CCCSSCEEEEEEEEETTEEEEEEEEECSSCCCHH-----HHHHCSEEEEE
T ss_pred             CcEEEEEECCCCCCHHHHHHHHHhCCCCC-cCCccceeEEEEeecCceEEEEEEeecccccccc-----cccccceeEEE
Confidence            47999999999999999999999999865 4566677777778899999999999999987653     57789999999


Q ss_pred             EeCCCchhHHHHHHHHHHHHhhhC----CCCCEEEEeeCCcccCCcccccCCCCCCcccHHHHHHHHHHhCCCceEEecc
Q 036449           85 FSLISKASYENVSKKWIPELKHYA----PGVPIILVGTKLDLRDDKQFFIDHPGAVPISTAQGEELRKLIGAPAYIECSS  160 (197)
Q Consensus        85 ~d~~~~~s~~~~~~~~~~~i~~~~----~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa  160 (197)
                      ||+++++||+.+ ..|+..+....    ++.|+++|+||.|+....        ...++.++++.++......+|++|||
T Consensus        78 fd~~~~~Sf~~~-~~~~~~i~~~~~~~~~~~pi~lV~~k~d~d~~~--------~~~v~~~~~~~~~~~~~~~~~~e~SA  148 (175)
T d2bmja1          78 FSLEDENSFQAV-SRLHGQLSSLRGEGRGGLALALVGTQDRISASS--------PRVVGDARARALCADMKRCSYYETCA  148 (175)
T ss_dssp             EETTCHHHHHHH-HHHHHHHHHHCC--CCCCEEEEEEECTTCCSSS--------CCCSCHHHHHHHHHTSTTEEEEEEBT
T ss_pred             eecccchhhhhh-HHHHHHHHHHhhcccCCccEEEEeeecCcchhh--------hcchhHHHHHHHHHHhCCCeEEEeCC
Confidence            999999999998 78888876543    477999999999985432        23467788888876654448999999


Q ss_pred             CCCCCHHHHHHHHHHHHcCCCch
Q 036449          161 KTQQNVKAVFDAAIRVVLQPPKT  183 (197)
Q Consensus       161 ~~~~~i~~l~~~i~~~~~~~~~~  183 (197)
                      ++|.|++++|..+++.+...+.+
T Consensus       149 k~~~~v~~~F~~l~~~i~~~~~~  171 (175)
T d2bmja1         149 TYGLNVDRVFQEVAQKVVTLRKQ  171 (175)
T ss_dssp             TTTBTHHHHHHHHHHHHHHHHHH
T ss_pred             CCCcCHHHHHHHHHHHHHHhhhh
Confidence            99999999999999988765433

>d1zd9a1 c.37.1.8 (A:18-181) ADP-ribosylation factor {Human (Homo sapiens), ARL8A [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL8A [TaxId: 9606]

Probab=100.00  E-value=7.5e-34  Score=193.03  Aligned_cols=162  Identities=20%  Similarity=0.273  Sum_probs=125.5

Q ss_pred             ceeEEEEEcCCCCCHHHHHHHHhhCCCCCCCCCceeeeeeEEEEECCeEEEEEEEeCCCccccccccccCcCCCcEEEEE
Q 036449            5 RFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILA   84 (197)
Q Consensus         5 ~~~~i~v~G~~~~GKstli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v   84 (197)
                      +.+||+++|++|||||||+++|..+.+...+.||.+..+. .+..++  +.+.+||+||++.+...+..++..++++++|
T Consensus         1 ~e~ki~i~G~~~~GKTsLl~~l~~~~~~~~~~~T~~~~~~-~~~~~~--~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v   77 (164)
T d1zd9a1           1 EEMELTLVGLQYSGKTTFVNVIASGQFNEDMIPTVGFNMR-KITKGN--VTIKLWDIGGQPRFRSMWERYCRGVSAIVYM   77 (164)
T ss_dssp             EEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCSEEEE-EEEETT--EEEEEEEECCSHHHHTTHHHHHTTCSEEEEE
T ss_pred             CeEEEEEECCCCCCHHHHHHHHHcCCCCCcccccceeeee-eeeeee--EEEEEeeccccccccccccccccccchhhcc
Confidence            3689999999999999999999999998888888764443 334444  7788999999999999999999999999999


Q ss_pred             EeCCCchhHHHHHHHHHHHHhhhC-CCCCEEEEeeCCcccCCcccccCCCCCCcccHHHHHHHHHHhCCCceEEeccCCC
Q 036449           85 FSLISKASYENVSKKWIPELKHYA-PGVPIILVGTKLDLRDDKQFFIDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQ  163 (197)
Q Consensus        85 ~d~~~~~s~~~~~~~~~~~i~~~~-~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~  163 (197)
                      ||++++++++.....|...+.... ++.|+++|+||.|+.+...       ...+....+..++...+. +++++||++|
T Consensus        78 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~pi~lv~nK~Dl~~~~~-------~~~i~~~~~~~~~~~~~~-~~~e~Sa~~g  149 (164)
T d1zd9a1          78 VDAADQEKIEASKNELHNLLDKPQLQGIPVLVLGNKRDLPGALD-------EKELIEKMNLSAIQDREI-CCYSISCKEK  149 (164)
T ss_dssp             EETTCGGGHHHHHHHHHHHHTCGGGTTCCEEEEEECTTSTTCCC-------HHHHHHHTTGGGCCSSCE-EEEECCTTTC
T ss_pred             cccccccccchhhhhhhhhhhhhcccCCcEEEEEeccccchhhh-------HHHHHHHHHHHHHHhCCC-EEEEEeCcCC
Confidence            999999999998444444544443 7899999999999965322       000111111222233344 7899999999


Q ss_pred             CCHHHHHHHHHHHH
Q 036449          164 QNVKAVFDAAIRVV  177 (197)
Q Consensus       164 ~~i~~l~~~i~~~~  177 (197)
                      .|++++|++|++.+
T Consensus       150 ~gv~e~~~~l~~~~  163 (164)
T d1zd9a1         150 DNIDITLQWLIQHS  163 (164)
T ss_dssp             TTHHHHHHHHHHTC
T ss_pred             cCHHHHHHHHHHcc
Confidence            99999999998853

>d1ksha_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL2 [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Mouse (Mus musculus), ARL2 [TaxId: 10090]

Probab=99.98  E-value=1.7e-31  Score=181.51  Aligned_cols=158  Identities=17%  Similarity=0.243  Sum_probs=122.3

Q ss_pred             ceeEEEEEcCCCCCHHHHHHHHhhCCCCCCCCCceeeeeeEEEEECCeEEEEEEEeCCCccccccccccCcCCCcEEEEE
Q 036449            5 RFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILA   84 (197)
Q Consensus         5 ~~~~i~v~G~~~~GKstli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v   84 (197)
                      +.+||+++|.+|||||||+++|.+..+. .+.+|.+.. ...+...+  +.+.+||+||++.++..+..++..++++++|
T Consensus         1 k~~ki~ivG~~~~GKTsLi~~l~~~~~~-~~~~t~~~~-~~~~~~~~--~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v   76 (165)
T d1ksha_           1 RELRLLMLGLDNAGKTTILKKFNGEDVD-TISPTLGFN-IKTLEHRG--FKLNIWDVGGQKSLRSYWRNYFESTDGLIWV   76 (165)
T ss_dssp             CCEEEEEECSTTSSHHHHHHHHTTCCCS-SCCCCSSEE-EEEEEETT--EEEEEEEECCSHHHHTTGGGGCTTCSEEEEE
T ss_pred             CcEEEEEECCCCCCHHHHHHHHcCCCCC-cccceEeee-eeeccccc--cceeeeecCcchhhhhHHHhhhhhhhcceee
Confidence            4689999999999999999999887664 345555432 22334444  7788999999999999999999999999999


Q ss_pred             EeCCCchhHHHHHHHHHHHHhhhC-CCCCEEEEeeCCcccCCcccccCCCCCCcccHHHHHHHH-----HHhCCCceEEe
Q 036449           85 FSLISKASYENVSKKWIPELKHYA-PGVPIILVGTKLDLRDDKQFFIDHPGAVPISTAQGEELR-----KLIGAPAYIEC  158 (197)
Q Consensus        85 ~d~~~~~s~~~~~~~~~~~i~~~~-~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~  158 (197)
                      +|+++..++......|...+.... ++.|+++|+||+|+.+...            .++.....     ...+. ++++|
T Consensus        77 ~d~~d~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~------------~~~~~~~~~~~~~~~~~~-~~~~~  143 (165)
T d1ksha_          77 VDSADRQRMQDCQRELQSLLVEERLAGATLLIFANKQDLPGALS------------CNAIQEALELDSIRSHHW-RIQGC  143 (165)
T ss_dssp             EETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCC------------HHHHHHHTTGGGCCSSCE-EEEEC
T ss_pred             eecccchhHHHHHHhhhhhhhhcccCCCceEEEEeccccccccC------------HHHHHHHHHhhhhhcCCC-EEEEE
Confidence            999999999998666666665443 6899999999999965432            12222211     11122 68999


Q ss_pred             ccCCCCCHHHHHHHHHHHHcC
Q 036449          159 SSKTQQNVKAVFDAAIRVVLQ  179 (197)
Q Consensus       159 sa~~~~~i~~l~~~i~~~~~~  179 (197)
                      ||++|.|++++|++|++++..
T Consensus       144 Sa~~g~gv~e~~~~l~~~i~~  164 (165)
T d1ksha_         144 SAVTGEDLLPGIDWLLDDISS  164 (165)
T ss_dssp             CTTTCTTHHHHHHHHHHHHHT
T ss_pred             ECCCCCCHHHHHHHHHHHHHc
Confidence            999999999999999988764

>d1fzqa_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL3 [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Mouse (Mus musculus), ARL3 [TaxId: 10090]

Probab=99.97  E-value=9.6e-33  Score=189.57  Aligned_cols=161  Identities=20%  Similarity=0.261  Sum_probs=118.6

Q ss_pred             CCCceeEEEEEcCCCCCHHHHHHHHhhCCCCCCCCCceeeeeeEEEEECCeEEEEEEEeCCCccccccccccCcCCCcEE
Q 036449            2 SASRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVF   81 (197)
Q Consensus         2 ~~~~~~~i~v~G~~~~GKstli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~   81 (197)
                      ++.+.+||+++|.+|||||||++++.++.+.... ++.+ .....+...+  +.+.+||++|++.++..+..++..+|++
T Consensus        12 ~~~~~~kI~vvG~~~vGKSsLi~~l~~~~~~~~~-~~~~-~~~~~i~~~~--~~~~i~d~~g~~~~~~~~~~~~~~~~~i   87 (176)
T d1fzqa_          12 APDQEVRILLLGLDNAGKTTLLKQLASEDISHIT-PTQG-FNIKSVQSQG--FKLNVWDIGGQRKIRPYWRSYFENTDIL   87 (176)
T ss_dssp             CCSSCEEEEEEESTTSSHHHHHHHHCCSCCEEEE-EETT-EEEEEEEETT--EEEEEEECSSCGGGHHHHHHHHTTCSEE
T ss_pred             CCCCEEEEEEECCCCCCHHHHHHHHhcCCCCcce-eeee-eeEEEeccCC--eeEeEeeccccccchhHHHHHhhcccee
Confidence            3467899999999999999999999988764322 2221 1222333444  7788999999999999999999999999


Q ss_pred             EEEEeCCCchhHHHHHHHHHHHHhh-hC-CCCCEEEEeeCCcccCCcccccCCCCCCcccHHHH--HHHHHHhCCCceEE
Q 036449           82 ILAFSLISKASYENVSKKWIPELKH-YA-PGVPIILVGTKLDLRDDKQFFIDHPGAVPISTAQG--EELRKLIGAPAYIE  157 (197)
Q Consensus        82 i~v~d~~~~~s~~~~~~~~~~~i~~-~~-~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~  157 (197)
                      |+|||+++..++..+ ..|+..+.. .. .+.|+++|+||+|+......         ....+.  ...+...+. .+++
T Consensus        88 i~v~d~~d~~s~~~~-~~~~~~~~~~~~~~~~pillv~nK~Dl~~~~~~---------~~~~~~~~~~~~~~~~~-~~~~  156 (176)
T d1fzqa_          88 IYVIDSADRKRFEET-GQELTELLEEEKLSCVPVLIFANKQDLLTAAPA---------SEIAEGLNLHTIRDRVW-QIQS  156 (176)
T ss_dssp             EEEEETTCGGGHHHH-HHHHHHHTTCGGGTTCCEEEEEECTTSTTCCCH---------HHHHHHTTGGGCCSSCE-EEEE
T ss_pred             EEeeccccccchhhh-hhhhhhhhhhhccCCCeEEEEEEeccccccccH---------HHHHHHHHHHHHHhcCC-EEEE
Confidence            999999999999998 444444443 33 58999999999999764320         001111  111222233 6899


Q ss_pred             eccCCCCCHHHHHHHHHHHH
Q 036449          158 CSSKTQQNVKAVFDAAIRVV  177 (197)
Q Consensus       158 ~sa~~~~~i~~l~~~i~~~~  177 (197)
                      |||++|+|++++|++|++.+
T Consensus       157 ~SA~tg~gv~e~~~~l~~~i  176 (176)
T d1fzqa_         157 CSALTGEGVQDGMNWVCKNV  176 (176)
T ss_dssp             CCTTTCTTHHHHHHHHHHTC
T ss_pred             EeCCCCCCHHHHHHHHHhcC
Confidence            99999999999999998753

>d1moza_ c.37.1.8 (A:) ADP-ribosylation factor {Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]

Probab=99.97  E-value=8.7e-33  Score=190.79  Aligned_cols=166  Identities=17%  Similarity=0.202  Sum_probs=117.4

Q ss_pred             CCCceeEEEEEcCCCCCHHHHHHHHhhCCCCCCCCCceeeeeeEEEEECCeEEEEEEEeCCCccccccccccCcCCCcEE
Q 036449            2 SASRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVF   81 (197)
Q Consensus         2 ~~~~~~~i~v~G~~~~GKstli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~   81 (197)
                      ...+.+||+++|.+|||||||++++..+.+... .+|.+.. .......+  +.+.+||+||++.+...+..++..++++
T Consensus        13 ~~~k~~KI~lvG~~~vGKTsLi~~l~~~~~~~~-~~t~~~~-~~~~~~~~--~~~~i~D~~g~~~~~~~~~~~~~~~~~i   88 (182)
T d1moza_          13 GSNKELRILILGLDGAGKTTILYRLQIGEVVTT-KPTIGFN-VETLSYKN--LKLNVWDLGGQTSIRPYWRCYYADTAAV   88 (182)
T ss_dssp             TCSSCEEEEEEEETTSSHHHHHHHTCCSEEEEE-CSSTTCC-EEEEEETT--EEEEEEEEC----CCTTGGGTTTTEEEE
T ss_pred             CCCceEEEEEECCCCCCHHHHHHHHhcCCCCcc-ccccceE-EEEEeeCC--EEEEEEecccccccchhHHhhhccceeE
Confidence            457889999999999999999999987765432 2333222 22233344  7788999999999999999999999999


Q ss_pred             EEEEeCCCchhHHHHHHHHHHHHhhhC-CCCCEEEEeeCCcccCCcccccCCCCCCcccHHHHHHHHHHhCCCceEEecc
Q 036449           82 ILAFSLISKASYENVSKKWIPELKHYA-PGVPIILVGTKLDLRDDKQFFIDHPGAVPISTAQGEELRKLIGAPAYIECSS  160 (197)
Q Consensus        82 i~v~d~~~~~s~~~~~~~~~~~i~~~~-~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa  160 (197)
                      ++|||++++.++......|...+.... .+.|+++|+||+|+.....       ...+........+...+. .+++|||
T Consensus        89 i~v~d~~d~~s~~~~~~~l~~~~~~~~~~~~piliv~NK~Dl~~~~~-------~~~i~~~~~~~~~~~~~~-~~~e~SA  160 (182)
T d1moza_          89 IFVVDSTDKDRMSTASKELHLMLQEEELQDAALLVFANKQDQPGALS-------ASEVSKELNLVELKDRSW-SIVASSA  160 (182)
T ss_dssp             EEEEETTCTTTHHHHHHHHHHHTTSSTTSSCEEEEEEECTTSTTCCC-------HHHHHHHTTTTTCCSSCE-EEEEEBG
T ss_pred             EEEeeecccccchhHHHHHHHHHHhhccCCcceEEEEEeeccccccC-------HHHHHHHHHHHHHhhCCC-EEEEEEC
Confidence            999999999999988444444444443 5899999999999965321       000111111112222333 6899999


Q ss_pred             CCCCCHHHHHHHHHHHHcC
Q 036449          161 KTQQNVKAVFDAAIRVVLQ  179 (197)
Q Consensus       161 ~~~~~i~~l~~~i~~~~~~  179 (197)
                      ++|+|++++|++|++.+.+
T Consensus       161 ~~g~gv~e~~~~l~~~i~~  179 (182)
T d1moza_         161 IKGEGITEGLDWLIDVIKE  179 (182)
T ss_dssp             GGTBTHHHHHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHHHH
Confidence            9999999999999998743

>d1e0sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF6 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARF6 [TaxId: 9606]

Probab=99.97  E-value=2.3e-32  Score=187.16  Aligned_cols=163  Identities=17%  Similarity=0.199  Sum_probs=120.1

Q ss_pred             CCceeEEEEEcCCCCCHHHHHHHHhhCCCCCCCCCceeeeeeEEEEECCeEEEEEEEeCCCccccccccccCcCCCcEEE
Q 036449            3 ASRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFI   82 (197)
Q Consensus         3 ~~~~~~i~v~G~~~~GKstli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i   82 (197)
                      .++.+||+++|.+|||||||++++..+.+... .+|.+.. .......  .+.+.+||+||++.++..+..++..+++++
T Consensus         9 ~~k~~kIvlvG~~~vGKTSli~rl~~~~~~~~-~~t~~~~-~~~~~~~--~~~~~i~D~~g~~~~~~~~~~~~~~~~~ii   84 (173)
T d1e0sa_           9 GNKEMRILMLGLDAAGKTTILYKLKLGQSVTT-IPTVGFN-VETVTYK--NVKFNVWDVGGQDKIRPLWRHYYTGTQGLI   84 (173)
T ss_dssp             TTCCEEEEEEEETTSSHHHHHHHTTCCCCEEE-EEETTEE-EEEEEET--TEEEEEEEESCCGGGHHHHGGGTTTCCEEE
T ss_pred             CCCeEEEEEECCCCCCHHHHHHHHhcCCCCCc-cceeeee-EEEeecc--ceeeEEecCCCcchhhhHHHhhhcccceEE
Confidence            35779999999999999999999988765432 2222221 1222233  378889999999999999999999999999


Q ss_pred             EEEeCCCchhHHHHHHHHHHHHhhhC-CCCCEEEEeeCCcccCCcccccCCCCCCcccHHHHHHHHHHhCCCceEEeccC
Q 036449           83 LAFSLISKASYENVSKKWIPELKHYA-PGVPIILVGTKLDLRDDKQFFIDHPGAVPISTAQGEELRKLIGAPAYIECSSK  161 (197)
Q Consensus        83 ~v~d~~~~~s~~~~~~~~~~~i~~~~-~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~  161 (197)
                      +|+|+++.+++..+...|...+.... .+.|+++++||+|+.+....       ..+....+...+...+. .+++|||+
T Consensus        85 ~v~D~s~~~~~~~~~~~l~~~~~~~~~~~~piiiv~NK~Dl~~~~~~-------~~i~~~~~~~~~~~~~~-~~~e~SA~  156 (173)
T d1e0sa_          85 FVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAMKP-------HEIQEKLGLTRIRDRNW-YVQPSCAT  156 (173)
T ss_dssp             EEEETTCGGGHHHHHHHHHHHHTSGGGTTCEEEEEEECTTSTTCCCH-------HHHHHHTTGGGCCSSCE-EEEECBTT
T ss_pred             EEEecccchhHHHHHHHHHHHhhhcccccceeeeeeecccccccccH-------HHHHHHHHHHHHHhCCC-EEEEeeCC
Confidence            99999999999998555556565444 68999999999999754320       00111111122222233 68999999


Q ss_pred             CCCCHHHHHHHHHHHH
Q 036449          162 TQQNVKAVFDAAIRVV  177 (197)
Q Consensus       162 ~~~~i~~l~~~i~~~~  177 (197)
                      +|+||+++|++|.+.+
T Consensus       157 tg~gv~e~~~~l~~~~  172 (173)
T d1e0sa_         157 SGDGLYEGLTWLTSNY  172 (173)
T ss_dssp             TTBTHHHHHHHHHHHC
T ss_pred             CCcCHHHHHHHHHHhc
Confidence            9999999999998765

>d1r8sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF1 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARF1 [TaxId: 9606]

Probab=99.96  E-value=2e-30  Score=174.98  Aligned_cols=159  Identities=15%  Similarity=0.199  Sum_probs=121.2

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhhCCCCCCCCCceeeeeeEEEEECCeEEEEEEEeCCCccccccccccCcCCCcEEEEEEe
Q 036449            7 IKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFS   86 (197)
Q Consensus         7 ~~i~v~G~~~~GKstli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d   86 (197)
                      +||+++|++|||||||++++..+.+...+..+...    ....+...+.+.+||+||...+...+..++..++++++++|
T Consensus         1 ikivlvG~~~vGKSsLi~~l~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~~~d   76 (160)
T d1r8sa_           1 MRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFN----VETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVD   76 (160)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHHCSSCCCCCSSCC----EEEEECSSCEEEEEECCCCGGGHHHHHHHTTTCSEEEEEEE
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCCCccccceeeE----EEEEeeeeEEEEEecCCCcccchhhhhhhhccceeEEEEEE
Confidence            69999999999999999999988876654433321    22334455788999999999999899999999999999999


Q ss_pred             CCCchhHHHHHHHHHHHHhhhC-CCCCEEEEeeCCcccCCcccccCCCCCCcccHHHHHHHHHHhCCCceEEeccCCCCC
Q 036449           87 LISKASYENVSKKWIPELKHYA-PGVPIILVGTKLDLRDDKQFFIDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQQN  165 (197)
Q Consensus        87 ~~~~~s~~~~~~~~~~~i~~~~-~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~  165 (197)
                      ++++.++..+...+...+.... ...|+++++||.|+.....       ..++.......++...+. ++++|||++|.|
T Consensus        77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~k~d~~~~~~-------~~~i~~~~~~~~~~~~~~-~~~~~SAktg~g  148 (160)
T d1r8sa_          77 SNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAMN-------AAEITDKLGLHSLRHRNW-YIQATCATSGDG  148 (160)
T ss_dssp             TTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCC-------HHHHHHHTTGGGCSSCCE-EEEECBTTTTBT
T ss_pred             ecChHHHHHHHHHHHHHHHhhcccCceEEEEeeccccccccc-------HHHHHHHHHHHHHhhCCC-EEEEeECCCCCC
Confidence            9999999998544455544443 5789999999999876432       011222222334444455 799999999999


Q ss_pred             HHHHHHHHHHHH
Q 036449          166 VKAVFDAAIRVV  177 (197)
Q Consensus       166 i~~l~~~i~~~~  177 (197)
                      ++++|++|++++
T Consensus       149 i~e~~~~l~~~l  160 (160)
T d1r8sa_         149 LYEGLDWLSNQL  160 (160)
T ss_dssp             HHHHHHHHHHHC
T ss_pred             HHHHHHHHHhcC
Confidence            999999999864

>d1wf3a1 c.37.1.8 (A:3-180) GTPase Era, N-terminal domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Era, N-terminal domain
species: Thermus thermophilus [TaxId: 274]

Probab=99.95  E-value=2.3e-27  Score=162.73  Aligned_cols=156  Identities=17%  Similarity=0.141  Sum_probs=115.3

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhhCCCC--CCCCCceeeeeeEEEEECCeEEEEEEEeCCCccccccc--------cccCcC
Q 036449            7 IKCVTVGDGAVGKTCLLISYTSNTFP--TDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQEDYNRL--------RPLSYR   76 (197)
Q Consensus         7 ~~i~v~G~~~~GKstli~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~--------~~~~~~   76 (197)
                      -.|+++|.+|||||||++++++....  .....++...........+  ..+.+|||||.......        ....+.
T Consensus         6 ~~I~lvG~~~~GKSSLin~l~~~~~~~~~~~~~tt~~~~~~~~~~~~--~~~~~~DtpG~~~~~~~~~~~~~~~~~~~~~   83 (178)
T d1wf3a1           6 GFVAIVGKPNVGKSTLLNNLLGVKVAPISPRPQTTRKRLRGILTEGR--RQIVFVDTPGLHKPMDALGEFMDQEVYEALA   83 (178)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHTSCCSCCCSSSCCCCSCEEEEEEETT--EEEEEEECCCCCCCCSHHHHHHHHHHHHHTS
T ss_pred             cEEEEECCCCCCHHHHHHHHhCCCceeecccCCcccccccceeeeee--eeeeecccccccccccccchhcccccccccc
Confidence            46999999999999999999987542  3334444444444444555  46779999997543322        233477


Q ss_pred             CCcEEEEEEeCCCchhHHHHHHHHHHHHhhhCCCCCEEEEeeCCcccCCcccccCCCCCCcccHHHHHHHHHHhCCCceE
Q 036449           77 GADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPISTAQGEELRKLIGAPAYI  156 (197)
Q Consensus        77 ~~~~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  156 (197)
                      ++|++++|+|++++.+..+  ..|...++....+.|+++|+||+|+....             .+....+.+..+...++
T Consensus        84 ~ad~il~v~D~~~~~~~~~--~~i~~~l~~~~~~~piilv~NK~Dl~~~~-------------~~~~~~~~~~~~~~~~~  148 (178)
T d1wf3a1          84 DVNAVVWVVDLRHPPTPED--ELVARALKPLVGKVPILLVGNKLDAAKYP-------------EEAMKAYHELLPEAEPR  148 (178)
T ss_dssp             SCSEEEEEEETTSCCCHHH--HHHHHHHGGGTTTSCEEEEEECGGGCSSH-------------HHHHHHHHHTSTTSEEE
T ss_pred             cccceeeeechhhhhcccc--cchhhheeccccchhhhhhhcccccccCH-------------HHHHHHHHhhcccCceE
Confidence            8999999999998765543  46677777766789999999999996532             23345566666665789


Q ss_pred             EeccCCCCCHHHHHHHHHHHHcC
Q 036449          157 ECSSKTQQNVKAVFDAAIRVVLQ  179 (197)
Q Consensus       157 ~~sa~~~~~i~~l~~~i~~~~~~  179 (197)
                      ++||++|.|+++++++|++.+.+
T Consensus       149 ~iSA~~~~gi~~L~~~i~~~lpe  171 (178)
T d1wf3a1         149 MLSALDERQVAELKADLLALMPE  171 (178)
T ss_dssp             ECCTTCHHHHHHHHHHHHTTCCB
T ss_pred             EEecCCCCCHHHHHHHHHHhCCC
Confidence            99999999999999999987754

>d1upta_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARL1 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL1 [TaxId: 9606]

Probab=99.95  E-value=6.9e-27  Score=158.62  Aligned_cols=165  Identities=14%  Similarity=0.195  Sum_probs=123.8

Q ss_pred             CceeEEEEEcCCCCCHHHHHHHHhhCCCCCCCCCceeeeeeEEEEECCeEEEEEEEeCCCccccccccccCcCCCcEEEE
Q 036449            4 SRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFIL   83 (197)
Q Consensus         4 ~~~~~i~v~G~~~~GKstli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~   83 (197)
                      ++.+||+++|.+|||||||++++.++.+.... ++.+.. ......++  +.+.+||.+|.+.+...+...+...+++++
T Consensus         3 ~ke~kI~ivG~~~vGKSSLi~~~~~~~~~~~~-~~~~~~-~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   78 (169)
T d1upta_           3 TREMRILILGLDGAGKTTILYRLQVGEVVTTI-PTIGFN-VETVTYKN--LKFQVWDLGGLTSIRPYWRCYYSNTDAVIY   78 (169)
T ss_dssp             SSCEEEEEECSTTSSHHHHHHHHHHSSCCCCC-CCSSEE-EEEEEETT--EEEEEEEECCCGGGGGGGGGGCTTCSEEEE
T ss_pred             CcceEEEEECCCCCCHHHHHHHHhCCCCccee-ccccee-eeeeccCc--eEEEEeeccccccccccchhhhhhhhhhhh
Confidence            35699999999999999999999999876542 333222 22233344  678899999999999999999999999999


Q ss_pred             EEeCCCchhHHHHHHHHHHHHhhhC-CCCCEEEEeeCCcccCCcccccCCCCCCcccHHHHHHHHHHhCCCceEEeccCC
Q 036449           84 AFSLISKASYENVSKKWIPELKHYA-PGVPIILVGTKLDLRDDKQFFIDHPGAVPISTAQGEELRKLIGAPAYIECSSKT  162 (197)
Q Consensus        84 v~d~~~~~s~~~~~~~~~~~i~~~~-~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~  162 (197)
                      ++|+.+..++......+...+.... +..|+++++||.|+.....       ...+....+..++...+. +|+++||++
T Consensus        79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~iv~nk~Dl~~~~~-------~~~i~~~~~~~~~~~~~~-~~~~~SA~~  150 (169)
T d1upta_          79 VVDSCDRDRIGISKSELVAMLEEEELRKAILVVFANKQDMEQAMT-------SSEMANSLGLPALKDRKW-QIFKTSATK  150 (169)
T ss_dssp             EEETTCCTTHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCC-------HHHHHHHHTGGGCTTSCE-EEEECCTTT
T ss_pred             hhhhhhcchhhhccchhhhhhhhhccccceEEEEEeecccccccc-------HHHHHHHHHHHHHhcCCC-EEEEEeCCC
Confidence            9999999998888555555555444 6899999999999976432       001112222233444444 899999999


Q ss_pred             CCCHHHHHHHHHHHHcCC
Q 036449          163 QQNVKAVFDAAIRVVLQP  180 (197)
Q Consensus       163 ~~~i~~l~~~i~~~~~~~  180 (197)
                      |.||+++|++|++.+.++
T Consensus       151 g~gv~e~~~~l~~~l~~k  168 (169)
T d1upta_         151 GTGLDEAMEWLVETLKSR  168 (169)
T ss_dssp             CTTHHHHHHHHHHHHHTC
T ss_pred             CCCHHHHHHHHHHHHHhC
Confidence            999999999999987554

>d1zj6a1 c.37.1.8 (A:2-178) ADP-ribosylation factor {Human (Homo sapiens), ARL5A [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL5A [TaxId: 9606]

Probab=99.95  E-value=1e-27  Score=164.26  Aligned_cols=160  Identities=17%  Similarity=0.223  Sum_probs=114.7

Q ss_pred             CCceeEEEEEcCCCCCHHHHHHHHhhCCCCCCCCCceeeeeeEEEEECCeEEEEEEEeCCCccccccccccCcCCCcEEE
Q 036449            3 ASRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFI   82 (197)
Q Consensus         3 ~~~~~~i~v~G~~~~GKstli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i   82 (197)
                      +.+.+||+|+|.+|||||||++++..+.+.... ++.. .........+  +.+.+||++|++.....+..++..+++++
T Consensus        12 ~~k~~kI~vvG~~~~GKSsLi~rl~~~~~~~~~-~~~~-~~~~~~~~~~--~~~~~~d~~~~~~~~~~~~~~~~~~~~~i   87 (177)
T d1zj6a1          12 NHQEHKVIIVGLDNAGKTTILYQFSMNEVVHTS-PTIG-SNVEEIVINN--TRFLMWDIGGQESLRSSWNTYYTNTEFVI   87 (177)
T ss_dssp             TTSCEEEEEEESTTSSHHHHHHHHHTTSCEEEE-CCSC-SSCEEEEETT--EEEEEEECCC----CGGGHHHHTTCCEEE
T ss_pred             CCCeEEEEEECCCCCCHHHHHHHHhcCCCCccc-cccc-eeEEEEeecc--eEEEEeccccccccccchhhhhccceeee
Confidence            457799999999999999999999998765322 1111 2223333344  67889999999999999999999999999


Q ss_pred             EEEeCCCchhHHHHHHHHHHHHhhhC-CCCCEEEEeeCCcccCCcccccCCCCCCcccHHHHHHH----HHHhCCCceEE
Q 036449           83 LAFSLISKASYENVSKKWIPELKHYA-PGVPIILVGTKLDLRDDKQFFIDHPGAVPISTAQGEEL----RKLIGAPAYIE  157 (197)
Q Consensus        83 ~v~d~~~~~s~~~~~~~~~~~i~~~~-~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~  157 (197)
                      +++|.++..++......+........ .+.|+++|+||+|+.....           ..+....+    +...+. ++++
T Consensus        88 ~v~d~~d~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~-----------~~~i~~~~~~~~~~~~~~-~~~~  155 (177)
T d1zj6a1          88 VVVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDVKECMT-----------VAEISQFLKLTSIKDHQW-HIQA  155 (177)
T ss_dssp             EEEETTCTTTHHHHHHHHHHHHTSGGGTTCEEEEEEECTTSTTCCC-----------HHHHHHHHTGGGCCSSCE-EEEE
T ss_pred             eecccccccchhhhhhhhhhhhhcccccceEEEEEEEcccccccCc-----------HHHHHHHHHHHhhHhcCC-EEEE
Confidence            99999999999887444443333333 6899999999999865432           11111121    122233 7999


Q ss_pred             eccCCCCCHHHHHHHHHHHHc
Q 036449          158 CSSKTQQNVKAVFDAAIRVVL  178 (197)
Q Consensus       158 ~sa~~~~~i~~l~~~i~~~~~  178 (197)
                      +||++|+|++++|++|.+++.
T Consensus       156 ~Sa~tg~Gi~e~~~~L~~~lk  176 (177)
T d1zj6a1         156 CCALTGEGLCQGLEWMMSRLK  176 (177)
T ss_dssp             CBTTTTBTHHHHHHHHHHHHC
T ss_pred             EeCCCCCCHHHHHHHHHHHhC
Confidence            999999999999999998863

>d1svsa1 c.37.1.8 (A:32-60,A:182-347) Transducin (alpha subunit) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.94  E-value=8.6e-27  Score=161.86  Aligned_cols=167  Identities=17%  Similarity=0.154  Sum_probs=116.1

Q ss_pred             ceeEEEEEcCCCCCHHHHHHHHhhCCCCCCCCCceeeeeeEEEEECCeEEEEEEEeCCCccccccccccCcCCCcEEEEE
Q 036449            5 RFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILA   84 (197)
Q Consensus         5 ~~~~i~v~G~~~~GKstli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v   84 (197)
                      +.+||+++|..|||||||+++|....+++.+.+        +..++...+.+++||++|++.++..|..++..++++++|
T Consensus         1 ~e~KivllG~~~vGKTsl~~r~~~~~~~t~~~~--------~~~~~~~~~~~~i~D~~Gq~~~~~~~~~~~~~~~~~i~v   72 (195)
T d1svsa1           1 REVKLLLLGAGESGKSTIVKQMKIIHEAGTGIV--------ETHFTFKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFC   72 (195)
T ss_dssp             CEEEEEEECSTTSSHHHHHHHHHHHHSCCCSEE--------EEEEEETTEEEEEEEECCSGGGGGGGGGGCTTCSEEEEE
T ss_pred             CceEEEEECCCCCCHHHHHHHHhhCCCCCccEE--------EEEEEeeeeeeeeeccccccccccchhhcccCCceeeeE
Confidence            568999999999999999999988766543221        222333347888999999999999999999999999999


Q ss_pred             EeCCCchhH----------HHHHHHHHHHHhhhC-CCCCEEEEeeCCcccCCcccc-----cCCCCCCcccHHHHH----
Q 036449           85 FSLISKASY----------ENVSKKWIPELKHYA-PGVPIILVGTKLDLRDDKQFF-----IDHPGAVPISTAQGE----  144 (197)
Q Consensus        85 ~d~~~~~s~----------~~~~~~~~~~i~~~~-~~~~~ivv~nK~D~~~~~~~~-----~~~~~~~~~~~~~~~----  144 (197)
                      +|+++.+++          .+....|...+.... ++.|+++++||.|+...+...     ............++.    
T Consensus        73 ~d~~~~~~~~~~~~~~~~~~e~~~~~~~i~~~~~~~~~~~~lv~Nk~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  152 (195)
T d1svsa1          73 VALSDYDLVLAEDEEMNRMHESMKLFDSICNNKWFTDTSIILFLNKKDLFEEKIKKSPLTICYPEYAGSNTYEEAAAYIQ  152 (195)
T ss_dssp             EEGGGGGCBCSSCTTSBHHHHHHHHHHHHHTCGGGTTSEEEEEEECHHHHHHHTTTSCGGGTCTTCCSCSSHHHHHHHHH
T ss_pred             EeecccchHHHHhhhhHHHHHHHHHHHHHhcccccCCCCEEEEeccchhhhhhccchHHHHHhhhhcCcccHHHHHHHHH
Confidence            999988764          233356666666554 689999999999985432111     000111111222221    


Q ss_pred             -HHHHHh-----CCCceEEeccCCCCCHHHHHHHHHHHHcC
Q 036449          145 -ELRKLI-----GAPAYIECSSKTQQNVKAVFDAAIRVVLQ  179 (197)
Q Consensus       145 -~~~~~~-----~~~~~~~~sa~~~~~i~~l~~~i~~~~~~  179 (197)
                       .+....     +...+++|||+++.||+++|+.+.+.+.+
T Consensus       153 ~~f~~~~~~~~~~~~~~~~tSA~~~~nv~~~F~~v~~~il~  193 (195)
T d1svsa1         153 CQFEDLNKRKDTKEIYTHFTCATDTKNVQFVFDAVTDVIIK  193 (195)
T ss_dssp             HHHHTTCSCTTTCCEEEEECCTTCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHhcccCCCcceeEEEEeECCHhHHHHHHHHHHHHHh
Confidence             111111     11146789999999999999999887653

>d2bcjq2 c.37.1.8 (Q:38-66,Q:184-354) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.93  E-value=5.6e-26  Score=158.30  Aligned_cols=169  Identities=17%  Similarity=0.135  Sum_probs=123.1

Q ss_pred             ceeEEEEEcCCCCCHHHHHHHHhhCCCCCCCCCceeeeeeEEEEECCeEEEEEEEeCCCccccccccccCcCCCcEEEEE
Q 036449            5 RFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILA   84 (197)
Q Consensus         5 ~~~~i~v~G~~~~GKstli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v   84 (197)
                      +.+||+++|..|||||||+++|..+.+.  +.||.+..+.   .+....+.+++||++|++.++..|..++..+++++++
T Consensus         1 ke~Kiv~lG~~~vGKTsll~r~~~~~~~--~~pTiG~~~~---~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~~   75 (200)
T d2bcjq2           1 RELKLLLLGTGESGKSTFIKQMRIIHGS--GVPTTGIIEY---PFDLQSVIFRMVDVGGQRSERRKWIHCFENVTSIMFL   75 (200)
T ss_dssp             CEEEEEEEESTTSSHHHHHHHHHHHTSS--CCCCCSCEEE---EEECSSCEEEEEECCCSTTGGGGGGGGCSSCSEEEEE
T ss_pred             CeeEEEEECCCCCCHHHHHHHHhCCCCC--CCceeeEEEE---EEeccceeeeeccccccccccccccccccccceeeEe
Confidence            5789999999999999999999988774  5677764432   2333447788999999999999999999999999999


Q ss_pred             EeCCCchh----------HHHHHHHHHHHHhhhC-CCCCEEEEeeCCcccCCcccc------cCCCCCCcccHHHHHHHH
Q 036449           85 FSLISKAS----------YENVSKKWIPELKHYA-PGVPIILVGTKLDLRDDKQFF------IDHPGAVPISTAQGEELR  147 (197)
Q Consensus        85 ~d~~~~~s----------~~~~~~~~~~~i~~~~-~~~~~ivv~nK~D~~~~~~~~------~~~~~~~~~~~~~~~~~~  147 (197)
                      ||.++..+          +.+....|...+.... ++.|+++++||.|+.......      .........+...+..+.
T Consensus        76 ~~~~~~~~~~~~~~~~~~~~e~~~~~~~~l~~~~~~~~~~~~v~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i  155 (200)
T d2bcjq2          76 VALSEYDQVLVESDNENRMEESKALFRTIITYPWFQNSSVILFLNKKDLLEEKIMYSHLVDYFPEYDGPQRDAQAAREFI  155 (200)
T ss_dssp             EEGGGGGCBCSSCTTSBHHHHHHHHHHHHHHCGGGSSSEEEEEEECHHHHHHHTTTSCHHHHSTTCCSCSSCHHHHHHHH
T ss_pred             eeccchhhhhhhhccccchHHHHHHHHHHHhhhhccCccEEEecchhhhhhhcccchHHHHhcccccCCchhHHHHHHHH
Confidence            99987642          3344478888887665 789999999999986433211      011111222333333332


Q ss_pred             HHh----C-----CCceEEeccCCCCCHHHHHHHHHHHHc
Q 036449          148 KLI----G-----APAYIECSSKTQQNVKAVFDAAIRVVL  178 (197)
Q Consensus       148 ~~~----~-----~~~~~~~sa~~~~~i~~l~~~i~~~~~  178 (197)
                      ...    .     ...+++|||++|.||.++|+.+.+.+.
T Consensus       156 ~~~f~~~~~~~~~~~~~~~tSAk~~~ni~~vF~~i~~~I~  195 (200)
T d2bcjq2         156 LKMFVDLNPDSDKIIYSHFTCATDTENIRFVFAAVKDTIL  195 (200)
T ss_dssp             HHHHHTTCSCTTSCEEEEECCTTCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHhcccCCCceEEEEeEEEcCHhHHHHHHHHHHHHH
Confidence            211    1     113678999999999999999988775

>d2gj8a1 c.37.1.8 (A:216-376) Probable tRNA modification GTPase TrmE (MnmE), G domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable tRNA modification GTPase TrmE (MnmE), G domain
species: Escherichia coli [TaxId: 562]

Probab=99.93  E-value=1.6e-26  Score=156.00  Aligned_cols=150  Identities=21%  Similarity=0.287  Sum_probs=110.2

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhhCCCC--CCCCCceeeeeeEEEEECCeEEEEEEEeCCCcccccc--------ccccCcC
Q 036449            7 IKCVTVGDGAVGKTCLLISYTSNTFP--TDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQEDYNR--------LRPLSYR   76 (197)
Q Consensus         7 ~~i~v~G~~~~GKstli~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~--------~~~~~~~   76 (197)
                      +||+++|.+|||||||++++++....  .....+............+  ..+.+||+||......        ....++.
T Consensus         2 ~kI~lvG~~nvGKSsLin~l~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~d~~g~~~~~~~~~~~~~~~~~~~~~   79 (161)
T d2gj8a1           2 MKVVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTRDVLREHIHIDG--MPLHIIDTAGLREASDEVERIGIERAWQEIE   79 (161)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHTSCCSCCCSSTTCCCSCEEEEEEETT--EEEEEEECCCCSCCSSHHHHHHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCCceEeecccccccceEeeeeeccC--ceeeeccccccccccccchhHHHHHHHHHHH
Confidence            79999999999999999999976643  2333343444444555566  5677999999654321        1233467


Q ss_pred             CCcEEEEEEeCCCchhHHHHHHHHHHHHhhhCCCCCEEEEeeCCcccCCcccccCCCCCCcccHHHHHHHHHHhCCCceE
Q 036449           77 GADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPISTAQGEELRKLIGAPAYI  156 (197)
Q Consensus        77 ~~~~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  156 (197)
                      .+|++++++|..+..+++.. ..|...+.....+.|+++|+||+|+......         .        .+..+. +++
T Consensus        80 ~~d~~i~~~d~~~~~~~~~~-~~~~~~~~~~~~~~~iilv~NK~Dl~~~~~~---------~--------~~~~~~-~~~  140 (161)
T d2gj8a1          80 QADRVLFMVDGTTTDAVDPA-EIWPEFIARLPAKLPITVVRNKADITGETLG---------M--------SEVNGH-ALI  140 (161)
T ss_dssp             TCSEEEEEEETTTCCCCSHH-HHCHHHHHHSCTTCCEEEEEECHHHHCCCCE---------E--------EEETTE-EEE
T ss_pred             hccccceeeccccccchhhh-hhhhhhhhhcccccceeeccchhhhhhhHHH---------H--------HHhCCC-cEE
Confidence            89999999999998887776 5666666665568999999999999664320         1        011233 899


Q ss_pred             EeccCCCCCHHHHHHHHHHHH
Q 036449          157 ECSSKTQQNVKAVFDAAIRVV  177 (197)
Q Consensus       157 ~~sa~~~~~i~~l~~~i~~~~  177 (197)
                      ++||++|.|+++++++|.+.+
T Consensus       141 ~iSAk~~~gi~~L~~~l~~~l  161 (161)
T d2gj8a1         141 RLSARTGEGVDVLRNHLKQSM  161 (161)
T ss_dssp             ECCTTTCTTHHHHHHHHHHHC
T ss_pred             EEECCCCCCHHHHHHHHHhhC
Confidence            999999999999999998864

>d1f6ba_ c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: 10029]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: SAR1
species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]

Probab=99.93  E-value=1.6e-24  Score=148.97  Aligned_cols=158  Identities=16%  Similarity=0.209  Sum_probs=111.5

Q ss_pred             CCceeEEEEEcCCCCCHHHHHHHHhhCCCCCCCCCceeeeeeEEEEECCeEEEEEEEeCCCccccccccccCcCCCcEEE
Q 036449            3 ASRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFI   82 (197)
Q Consensus         3 ~~~~~~i~v~G~~~~GKstli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i   82 (197)
                      .++..||+++|.+|||||||++++..+.+.... ++.... ......++  ..+.+||++++..+...+.......++++
T Consensus        10 ~~k~~kI~lvG~~~vGKTsLl~~l~~~~~~~~~-~~~~~~-~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   85 (186)
T d1f6ba_          10 YKKTGKLVFLGLDNAGKTTLLHMLKDDRLGQHV-PTLHPT-SEELTIAG--MTFTTFDLGGHIQARRVWKNYLPAINGIV   85 (186)
T ss_dssp             TTCCEEEEEEEETTSSHHHHHHHHSCC-------CCCCCS-CEEEEETT--EEEEEEEECC----CCGGGGGGGGCSEEE
T ss_pred             cCCCCEEEEECCCCCCHHHHHHHHhCCCCccee-cccccc-eeEEEecc--cccccccccchhhhhhHHhhhhcccceee
Confidence            367899999999999999999999988775543 333222 22344555  45779999999999999999999999999


Q ss_pred             EEEeCCCchhHHHHHHHHHHHHhhhC-CCCCEEEEeeCCcccCCcccccCCCCCCcccHHHHHHHHH-------------
Q 036449           83 LAFSLISKASYENVSKKWIPELKHYA-PGVPIILVGTKLDLRDDKQFFIDHPGAVPISTAQGEELRK-------------  148 (197)
Q Consensus        83 ~v~d~~~~~s~~~~~~~~~~~i~~~~-~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------  148 (197)
                      +++|+++...+......+........ ++.|+++++||.|+.....            ..+......             
T Consensus        86 ~~~d~~d~~~~~~~~~~~~~~~~~~~~~~~~~li~~~K~D~~~~~~------------~~~i~~~~~~~~~~~~~~~~~~  153 (186)
T d1f6ba_          86 FLVDCADHERLLESKEELDSLMTDETIANVPILILGNKIDRPEAIS------------EERLREMFGLYGQTTGKGSVSL  153 (186)
T ss_dssp             EEEETTCGGGHHHHHHHHHHHHTCGGGTTSCEEEEEECTTSTTCCC------------HHHHHHHHTCTTTCCCSSCCCT
T ss_pred             eeeeccCccchHHHHHHHHHhhcccccCCCceEEEEeccCccccCC------------HHHHHHHHhhcccchhhhhhhH
Confidence            99999999999887555555554443 7899999999999865321            222121111             


Q ss_pred             ----HhCCCceEEeccCCCCCHHHHHHHHHHHH
Q 036449          149 ----LIGAPAYIECSSKTQQNVKAVFDAAIRVV  177 (197)
Q Consensus       149 ----~~~~~~~~~~sa~~~~~i~~l~~~i~~~~  177 (197)
                          ..+. ++++|||++|+|++|+|+||++++
T Consensus       154 ~~~~~~~~-~~~~~SA~tg~Gi~e~~~~l~~~i  185 (186)
T d1f6ba_         154 KELNARPL-EVFMCSVLKRQGYGEGFRWMAQYI  185 (186)
T ss_dssp             TTCCSCCE-EEEECBTTTTBSHHHHHHHHHTTC
T ss_pred             HHhhcCCC-EEEEEeCCCCCCHHHHHHHHHHhh
Confidence                1122 689999999999999999998764

>d2qtvb1 c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: SAR1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.92  E-value=3.5e-24  Score=144.47  Aligned_cols=151  Identities=15%  Similarity=0.220  Sum_probs=112.0

Q ss_pred             EEEEEcCCCCCHHHHHHHHhhCCCCCCCCCceeeeeeEEEEECCeEEEEEEEeCCCccccccccccCcCCCcEEEEEEeC
Q 036449            8 KCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSL   87 (197)
Q Consensus         8 ~i~v~G~~~~GKstli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~   87 (197)
                      ||+++|++|||||||++++.++.+.. ..|+.+.... .....  ...+.+||++|...+...+..+...++++++++|.
T Consensus         2 KI~liG~~nvGKSSLln~l~~~~~~~-~~~t~~~~~~-~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~   77 (166)
T d2qtvb1           2 KLLFLGLDNAGKTTLLHMLKNDRLAT-LQPTWHPTSE-ELAIG--NIKFTTFDLGGHIQARRLWKDYFPEVNGIVFLVDA   77 (166)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHSCCCC-CCCCCSCEEE-EECCT--TCCEEEEECCCSGGGGGGGGGGCTTCSEEEEEEET
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCCCe-eeceeeEeEE-EeccC--CeeEEEEeeccchhhhhhHhhhhhheeeeeeeccc
Confidence            79999999999999999999988753 3444432222 22223  35677999999999999999999999999999999


Q ss_pred             CCchhHHHHHHHHHHHHhhhC-CCCCEEEEeeCCcccCCcccccCCCCCCcccHHHHHHH------------HHHhCCCc
Q 036449           88 ISKASYENVSKKWIPELKHYA-PGVPIILVGTKLDLRDDKQFFIDHPGAVPISTAQGEEL------------RKLIGAPA  154 (197)
Q Consensus        88 ~~~~s~~~~~~~~~~~i~~~~-~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~  154 (197)
                      ++..++......+........ .+.|+++++||.|+.....            ..+..+.            ....+. +
T Consensus        78 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~~~k~d~~~~~~------------~~~i~~~~~~~~~~~~~~~~~~~~~-~  144 (166)
T d2qtvb1          78 ADPERFDEARVELDALFNIAELKDVPFVILGNKIDAPNAVS------------EAELRSALGLLNTTGSQRIEGQRPV-E  144 (166)
T ss_dssp             TCGGGHHHHHHHHHHHHTCTTTTTCCEEEEEECTTSSSCCC------------HHHHHHHHTCSSCCC---CCSSCCE-E
T ss_pred             cchhhhhhhhHHHHhhhhhhccCCceEEEEeccccccccCC------------HHHHHHHhhhhhhhHHHhhcccCCC-E
Confidence            999998887544444444333 5899999999999965321            1111111            111122 6


Q ss_pred             eEEeccCCCCCHHHHHHHHHH
Q 036449          155 YIECSSKTQQNVKAVFDAAIR  175 (197)
Q Consensus       155 ~~~~sa~~~~~i~~l~~~i~~  175 (197)
                      +++|||++|+|++|+|++|.+
T Consensus       145 ~~~~SA~tg~Gv~e~~~~l~~  165 (166)
T d2qtvb1         145 VFMCSVVMRNGYLEAFQWLSQ  165 (166)
T ss_dssp             EEEEBTTTTBSHHHHHHHHTT
T ss_pred             EEEeeCCCCCCHHHHHHHHhC
Confidence            899999999999999999864

>d1udxa2 c.37.1.8 (A:157-336) Obg GTP-binding protein middle domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Obg GTP-binding protein middle domain
species: Thermus thermophilus [TaxId: 274]

Probab=99.92  E-value=3.1e-25  Score=152.29  Aligned_cols=161  Identities=17%  Similarity=0.116  Sum_probs=102.9

Q ss_pred             EEEEEcCCCCCHHHHHHHHhhCCCCCCCCCceeeeeeEEEEECCeEEEEEEEeCCCcccccc-------ccccCcCCCcE
Q 036449            8 KCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQEDYNR-------LRPLSYRGADV   80 (197)
Q Consensus         8 ~i~v~G~~~~GKstli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~-------~~~~~~~~~~~   80 (197)
                      +|+++|.+|||||||+++|.+........+..................+++||+||......       .....+..+++
T Consensus         3 ~VaivG~~nvGKSTLin~L~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~DtpG~~~~~~~~~~~~~~~l~~~~~~~~   82 (180)
T d1udxa2           3 DVGLVGYPNAGKSSLLAAMTRAHPKIAPYPFTTLSPNLGVVEVSEEERFTLADIPGIIEGASEGKGLGLEFLRHIARTRV   82 (180)
T ss_dssp             SEEEECCGGGCHHHHHHHHCSSCCEECCCTTCSSCCEEEEEECSSSCEEEEEECCCCCCCGGGSCCSCHHHHHHHTSSSE
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCCceeccCCCceeeeeceeeecCCCeEEEcCCCeeecCchHHHHHHHHHHHHHHhhhh
Confidence            59999999999999999998765422211122112222222222334677999999533211       11123567899


Q ss_pred             EEEEEeCCCch--hHHHHHHHHHHHHhhhCCCCCEEEEeeCCcccCCcccccCCCCCCcccHHHHHHHHHHhCCCceEEe
Q 036449           81 FILAFSLISKA--SYENVSKKWIPELKHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPISTAQGEELRKLIGAPAYIEC  158 (197)
Q Consensus        81 ~i~v~d~~~~~--s~~~~~~~~~~~i~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  158 (197)
                      +++++|.....  ..... ..|+........+.|+++|+||+|+.....            .++..+.....+. +++++
T Consensus        83 ~~~~~d~~~~~~~~~~~~-~~~~~~~~~~~~~~p~iiv~NK~D~~~~~~------------~~~~~~~~~~~~~-~~~~i  148 (180)
T d1udxa2          83 LLYVLDAADEPLKTLETL-RKEVGAYDPALLRRPSLVALNKVDLLEEEA------------VKALADALAREGL-AVLPV  148 (180)
T ss_dssp             EEEEEETTSCHHHHHHHH-HHHHHHHCHHHHHSCEEEEEECCTTSCHHH------------HHHHHHHHHTTTS-CEEEC
T ss_pred             hhhhcccccccccchhhh-hhhhhccccccchhhhhhhhhhhhhhhHHH------------HHHHHHHHHhcCC-eEEEE
Confidence            99999986542  22222 233333222223689999999999966432            2333444455565 89999


Q ss_pred             ccCCCCCHHHHHHHHHHHHcCCCc
Q 036449          159 SSKTQQNVKAVFDAAIRVVLQPPK  182 (197)
Q Consensus       159 sa~~~~~i~~l~~~i~~~~~~~~~  182 (197)
                      ||++|.|++++++.|.+.+...+.
T Consensus       149 SA~tg~gid~L~~~i~~~l~~~~~  172 (180)
T d1udxa2         149 SALTGAGLPALKEALHALVRSTPP  172 (180)
T ss_dssp             CTTTCTTHHHHHHHHHHHHHTSCC
T ss_pred             EcCCCCCHHHHHHHHHHHHhhcCC
Confidence            999999999999999998876543

>d1zcba2 c.37.1.8 (A:47-75,A:202-372) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.92  E-value=7.4e-25  Score=152.68  Aligned_cols=168  Identities=16%  Similarity=0.166  Sum_probs=109.9

Q ss_pred             ceeEEEEEcCCCCCHHHHHHHHhhCCCCCCCCCceeeeeeEEEEECCeEEEEEEEeCCCccccccccccCcCCCcEEEEE
Q 036449            5 RFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILA   84 (197)
Q Consensus         5 ~~~~i~v~G~~~~GKstli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v   84 (197)
                      +.+||+++|.+|||||||++++.   +...+.||.+... ..+...+  +.+++||++|++.++..+..+++++++++++
T Consensus         1 r~iKivllG~~~vGKTsll~r~~---f~~~~~pTiG~~~-~~~~~~~--~~~~~~D~~gq~~~~~~~~~~~~~~~~~~~~   74 (200)
T d1zcba2           1 RLVKILLLGAGESGKSTFLKQMR---IIHGQDPTKGIHE-YDFEIKN--VPFKMVDVGGQRSERKRWFECFDSVTSILFL   74 (200)
T ss_dssp             CCEEEEEECSTTSSHHHHHHHHH---HHHSCCCCSSEEE-EEEEETT--EEEEEEEECC-------CTTSCTTCCEEEEE
T ss_pred             CeEEEEEECCCCCCHHHHHHHHh---cCCCCCCeeeeEE-EEEeeee--eeeeeecccceeeecccccccccccceeEEE
Confidence            46899999999999999999993   4456677776332 2334444  7788999999999999999999999999999


Q ss_pred             EeCCCchh----------HHHHHHHHHHHHhhhC-CCCCEEEEeeCCcccCCcccc-------cCCCCCCcccHHHHHHH
Q 036449           85 FSLISKAS----------YENVSKKWIPELKHYA-PGVPIILVGTKLDLRDDKQFF-------IDHPGAVPISTAQGEEL  146 (197)
Q Consensus        85 ~d~~~~~s----------~~~~~~~~~~~i~~~~-~~~~~ivv~nK~D~~~~~~~~-------~~~~~~~~~~~~~~~~~  146 (197)
                      ||.++..+          ++.....|...+.... .++|+++++||+|+.+.....       .+.. ....+.+.+.++
T Consensus        75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~f~~~~-~~~~~~~~~~~~  153 (200)
T d1zcba2          75 VSSSEFDQVLMEDRQTNRLTESLNIFETIVNNRVFSNVSIILFLNKTDLLEEKVQVVSIKDYFLEFE-GDPHCLRDVQKF  153 (200)
T ss_dssp             EETTCTTCEETTEEEEEHHHHHHHHHHHHHTCGGGTTSEEEEEEECHHHHHHHTTTCCGGGTCTTCC-SCTTCHHHHHHH
T ss_pred             EEcCCcceeeeecccchhhhHHHHHHHHHhhChhhcCceEEEEeccchhhhhhccccHHHHhCcccc-CCcchHHHHHHH
Confidence            99987533          4444344455555443 689999999999986432111       0011 111223334433


Q ss_pred             HHHh----------CCCceEEeccCCCCCHHHHHHHHHHHHcC
Q 036449          147 RKLI----------GAPAYIECSSKTQQNVKAVFDAAIRVVLQ  179 (197)
Q Consensus       147 ~~~~----------~~~~~~~~sa~~~~~i~~l~~~i~~~~~~  179 (197)
                      ....          ....+++|||+++.||+++|+.+.+.+.+
T Consensus       154 ~~~~f~~~~~~~~~~~iy~~~TsA~d~~ni~~vf~~v~d~i~~  196 (200)
T d1zcba2         154 LVECFRGKRRDQQQRPLYHHFTTAINTENIRLVFRDVKDTILH  196 (200)
T ss_dssp             HHHHHHTTCSSCC--CCEEEECCTTCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhccCCCCCceEEEEeeeeCcHHHHHHHHHHHHHHHH
Confidence            3221          01135679999999999999998776643

>d1mkya1 c.37.1.8 (A:2-172) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase Der, N-terminal and middle domains
species: Thermotoga maritima [TaxId: 2336]

Probab=99.91  E-value=1.7e-24  Score=147.30  Aligned_cols=154  Identities=21%  Similarity=0.201  Sum_probs=102.7

Q ss_pred             EEEEEcCCCCCHHHHHHHHhhCCCC--CCCCCceeeeeeEEEEECCeEEEEEEEeCCCcccc---------ccccccCcC
Q 036449            8 KCVTVGDGAVGKTCLLISYTSNTFP--TDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQEDY---------NRLRPLSYR   76 (197)
Q Consensus         8 ~i~v~G~~~~GKstli~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~---------~~~~~~~~~   76 (197)
                      .|+++|.+|||||||+++|.+....  ....+++............  ..+.+||++|....         .......+.
T Consensus         2 ~V~liG~~n~GKSsLi~~L~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~~~d~~g~~~~~~~~~~~~~~~~~~~~~~   79 (171)
T d1mkya1           2 TVLIVGRPNVGKSTLFNKLVKKKKAIVEDEEGVTRDPVQDTVEWYG--KTFKLVDTCGVFDNPQDIISQKMKEVTLNMIR   79 (171)
T ss_dssp             EEEEECCTTSSHHHHHHHHHC--------------CCSEEEEEETT--EEEEEEECTTTTSSGGGCCCHHHHHHHHHHHT
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCcceecccCceeeccccccccccc--cccccccccceeeeeccccccccccccccccc
Confidence            5899999999999999999875542  3334444333333444444  56779999994221         122233467


Q ss_pred             CCcEEEEEEeCCCchhHHHHHHHHHHHHhhhCCCCCEEEEeeCCcccCCcccccCCCCCCcccHHHHHHHHHHhCCCceE
Q 036449           77 GADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPISTAQGEELRKLIGAPAYI  156 (197)
Q Consensus        77 ~~~~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  156 (197)
                      .+|+++++.|.+.......  ..+...++..  +.|+++|+||+|+.+..            ..+...++. ..+...++
T Consensus        80 ~ad~i~~~~~~~~~~~~~~--~~~~~~l~~~--~~pviiv~NK~Dl~~~~------------~~~~~~~~~-~~~~~~~i  142 (171)
T d1mkya1          80 EADLVLFVVDGKRGITKED--ESLADFLRKS--TVDTILVANKAENLREF------------EREVKPELY-SLGFGEPI  142 (171)
T ss_dssp             TCSEEEEEEETTTCCCHHH--HHHHHHHHHH--TCCEEEEEESCCSHHHH------------HHHTHHHHG-GGSSCSCE
T ss_pred             cCcEEEEeecccccccccc--cccccccccc--cccccccchhhhhhhhh------------hhHHHHHHH-hcCCCCeE
Confidence            8999999999887765544  3566677766  78999999999996432            122223333 23444789


Q ss_pred             EeccCCCCCHHHHHHHHHHHHcCC
Q 036449          157 ECSSKTQQNVKAVFDAAIRVVLQP  180 (197)
Q Consensus       157 ~~sa~~~~~i~~l~~~i~~~~~~~  180 (197)
                      ++||++|.|+++++++|.+.+.+.
T Consensus       143 ~iSAk~g~gid~L~~~i~~~l~e~  166 (171)
T d1mkya1         143 PVSAEHNINLDTMLETIIKKLEEK  166 (171)
T ss_dssp             ECBTTTTBSHHHHHHHHHHHHHHT
T ss_pred             EEecCCCCCHHHHHHHHHHhCCCC
Confidence            999999999999999999987554

>d1mkya2 c.37.1.8 (A:173-358) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase Der, N-terminal and middle domains
species: Thermotoga maritima [TaxId: 2336]

Probab=99.90  E-value=4.9e-23  Score=141.82  Aligned_cols=159  Identities=21%  Similarity=0.226  Sum_probs=104.7

Q ss_pred             CceeEEEEEcCCCCCHHHHHHHHhhCCC--CCCCCCceeeeeeEEEEECCeEEEEEEEeCCCcccccccc----------
Q 036449            4 SRFIKCVTVGDGAVGKTCLLISYTSNTF--PTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQEDYNRLR----------   71 (197)
Q Consensus         4 ~~~~~i~v~G~~~~GKstli~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~----------   71 (197)
                      +..+||+++|.+|||||||++++++...  ......++.........+++.  .+.++|+||.......+          
T Consensus         6 ~~~~kV~iiG~~~~GKSTLin~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~--~~~~~d~~g~~~~~~~~~~~~~~~~~~   83 (186)
T d1mkya2           6 TDAIKVAIVGRPNVGKSTLFNAILNKERALVSPIPGTTRDPVDDEVFIDGR--KYVFVDTAGLRRKSRVEPRTVEKYSNY   83 (186)
T ss_dssp             CSCEEEEEECSTTSSHHHHHHHHHTSTTEEECCCC------CCEEEEETTE--EEEESSCSCC-----------CCSCCH
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHHCCCcceeecccccccccceeeeccCCc--eeeeeccCCccccccccccccccchhH
Confidence            3469999999999999999999997654  244444544444555666764  46699999965432221          


Q ss_pred             --ccCcCCCcEEEEEEeCCCchhHHHHHHHHHHHHhhhCCCCCEEEEeeCCcccCCcccccCCCCCCcccHHHHHH-HHH
Q 036449           72 --PLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPISTAQGEE-LRK  148 (197)
Q Consensus        72 --~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~-~~~  148 (197)
                        ...+..+|++++|+|++.+...+.  ..+...+...  +.|+++|+||+|+.....          ....+..+ +..
T Consensus        84 ~~~~~~~~~dvii~v~d~~~~~~~~~--~~~~~~~~~~--~~~~i~v~nK~D~~~~~~----------~~~~~~~~~~~~  149 (186)
T d1mkya2          84 RVVDSIEKADVVVIVLDATQGITRQD--QRMAGLMERR--GRASVVVFNKWDLVVHRE----------KRYDEFTKLFRE  149 (186)
T ss_dssp             HHHHHHHHCSEEEEEEETTTCCCHHH--HHHHHHHHHT--TCEEEEEEECGGGSTTGG----------GCHHHHHHHHHH
T ss_pred             HHHHHHhcCCEEEEeecccccchhhH--HHHHHHHHHc--CCceeeeccchhhhcchh----------hhhhhHHHHHHH
Confidence              223456899999999987755443  3555566555  789999999999865442          11222222 222


Q ss_pred             ---HhCCCceEEeccCCCCCHHHHHHHHHHHHc
Q 036449          149 ---LIGAPAYIECSSKTQQNVKAVFDAAIRVVL  178 (197)
Q Consensus       149 ---~~~~~~~~~~sa~~~~~i~~l~~~i~~~~~  178 (197)
                         ..+..+++++||++|.|+++|++.|.+.+.
T Consensus       150 ~~~~~~~~~i~~vSa~~g~gv~~L~~~i~~~~~  182 (186)
T d1mkya2         150 KLYFIDYSPLIFTSADKGWNIDRMIDAMNLAYA  182 (186)
T ss_dssp             HCGGGTTSCEEECBTTTTBSHHHHHHHHHHHHH
T ss_pred             HhcccCCCeEEEEeCCCCCCHHHHHHHHHHHHH
Confidence               233447899999999999999999977654

>d1wb1a4 c.37.1.8 (A:1-179) Elongation factor SelB, N-terminal domain {Methanococcus maripaludis [TaxId: 39152]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor SelB, N-terminal domain
species: Methanococcus maripaludis [TaxId: 39152]

Probab=99.90  E-value=2.1e-23  Score=142.87  Aligned_cols=162  Identities=17%  Similarity=0.104  Sum_probs=107.6

Q ss_pred             CceeEEEEEcCCCCCHHHHHHHHhhCCCCCCCCCceee--------eeeEEEEECCeEEEEEEEeCCCccccccccccCc
Q 036449            4 SRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFD--------NFSANVVVNGSTVNLGLWDTAGQEDYNRLRPLSY   75 (197)
Q Consensus         4 ~~~~~i~v~G~~~~GKstli~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~   75 (197)
                      -+.++|+++|.+++|||||+++|.+.........+...        .........+  ..+.++|+||+.+|.......+
T Consensus         3 ~k~inIaiiG~~naGKSTL~n~L~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~--~~~~~~d~~g~~~~~~~~~~~l   80 (179)
T d1wb1a4           3 FKNINLGIFGHIDHGKTTLSKVLTEIASTSAHDKLPESQKRGITIDIGFSAFKLEN--YRITLVDAPGHADLIRAVVSAA   80 (179)
T ss_dssp             CEEEEEEEEECTTSSHHHHHHHHHTTC--------------------CCCEEEETT--EEEEECCCSSHHHHHHHHHHHT
T ss_pred             CCCEEEEEEeCCCCcHHHHHHHHHHhcCceecccccceeeeeeeccccccccccCC--ccccccccccccccccchhhhh
Confidence            36689999999999999999999864332211111110        1111222334  5577999999998888888888


Q ss_pred             CCCcEEEEEEeCCCchhHHHHHHHHHHHHhhhCCCCCEEEEeeCCcccCCcccccCCCCCCcccHHHHHHHHHH---hCC
Q 036449           76 RGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPISTAQGEELRKL---IGA  152 (197)
Q Consensus        76 ~~~~~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~  152 (197)
                      ..+|++++++|.+++...+..  .....+...  ++|+++|+||+|+......        ....+....+...   ...
T Consensus        81 ~~~d~~ilv~d~~~g~~~~~~--~~~~~~~~~--~~p~iiv~NKiD~~~~~~~--------~~~~~~~~~~~~~~~~~~~  148 (179)
T d1wb1a4          81 DIIDLALIVVDAKEGPKTQTG--EHMLILDHF--NIPIIVVITKSDNAGTEEI--------KRTEMIMKSILQSTHNLKN  148 (179)
T ss_dssp             TSCCEEEEEEETTTCSCHHHH--HHHHHHHHT--TCCBCEEEECTTSSCHHHH--------HHHHHHHHHHHHHSSSGGG
T ss_pred             hhccccccccccccccchhhh--hhhhhhhhc--CCcceeccccccccCHHHH--------HHHHHHHHHHHHHhhcCCC
Confidence            899999999999987655443  333444444  7999999999999764320        0011112222221   122


Q ss_pred             CceEEeccCCCCCHHHHHHHHHHHHcC
Q 036449          153 PAYIECSSKTQQNVKAVFDAAIRVVLQ  179 (197)
Q Consensus       153 ~~~~~~sa~~~~~i~~l~~~i~~~~~~  179 (197)
                      .+++++||++|.|++++++.|.+.+.+
T Consensus       149 ~~iv~iSA~~g~gi~eL~~~I~~~l~~  175 (179)
T d1wb1a4         149 SSIIPISAKTGFGVDELKNLIITTLNN  175 (179)
T ss_dssp             CCEEECCTTTCTTHHHHHHHHHHHHHH
T ss_pred             CeEEEEEccCCcCHHHHHHHHHhcCCc
Confidence            378999999999999999999987754

>d1xzpa2 c.37.1.8 (A:212-371) TrmE GTPase domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: TrmE GTPase domain
species: Thermotoga maritima [TaxId: 2336]

Probab=99.89  E-value=2.7e-23  Score=139.79  Aligned_cols=148  Identities=20%  Similarity=0.227  Sum_probs=101.2

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhhCCC--CCCCCCceeeeeeEEEEECCeEEEEEEEeCCCccccc--cc-------cccCc
Q 036449            7 IKCVTVGDGAVGKTCLLISYTSNTF--PTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQEDYN--RL-------RPLSY   75 (197)
Q Consensus         7 ~~i~v~G~~~~GKstli~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~--~~-------~~~~~   75 (197)
                      +||+++|.+|||||||++++.+...  ......++...........+  ..+.+||+||.....  ..       ....+
T Consensus         1 ikI~liG~~n~GKSSLin~l~g~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~Dt~G~~~~~~~~~~~~~~~~~~~~~   78 (160)
T d1xzpa2           1 LRMVIVGKPNVGKSTLLNRLLNEDRAIVTDIPGTTRDVISEEIVIRG--ILFRIVDTAGVRSETNDLVERLGIERTLQEI   78 (160)
T ss_dssp             EEEEEECCHHHHTCHHHHHHHHHTBCCCCCSSCCSSCSCCEEEEETT--EEEEEEESSCCCSSCCTTCCCCCHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCCceeeeccccccccceeEEEEeCC--eeEEeccccccccCCccHHHHHHHHHHHHHH
Confidence            6999999999999999999987543  23333444444455566666  567799999953211  11       11124


Q ss_pred             CCCcEEEEEEeCCCchhHHHHHHHHHHHHhhhCCCCCEEEEeeCCcccCCcccccCCCCCCcccHHHHHHHHHHhCCCce
Q 036449           76 RGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPISTAQGEELRKLIGAPAY  155 (197)
Q Consensus        76 ~~~~~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  155 (197)
                      ..+|++++|+|.+++...+..  .+...+    ...++++++||.|+.+...            .++.... ...+ .++
T Consensus        79 ~~ad~ii~v~d~~~~~~~~~~--~~~~~~----~~~~~i~~~~k~d~~~~~~------------~~~~~~~-~~~~-~~~  138 (160)
T d1xzpa2          79 EKADIVLFVLDASSPLDEEDR--KILERI----KNKRYLVVINKVDVVEKIN------------EEEIKNK-LGTD-RHM  138 (160)
T ss_dssp             HHCSEEEEEEETTSCCCHHHH--HHHHHH----TTSSEEEEEEECSSCCCCC------------HHHHHHH-HTCS-TTE
T ss_pred             HhCCEEEEEEeCCCCcchhhh--hhhhhc----ccccceeeeeeccccchhh------------hHHHHHH-hCCC-CcE
Confidence            679999999999998776554  222222    3578999999999976432            2222221 1122 379


Q ss_pred             EEeccCCCCCHHHHHHHHHHH
Q 036449          156 IECSSKTQQNVKAVFDAAIRV  176 (197)
Q Consensus       156 ~~~sa~~~~~i~~l~~~i~~~  176 (197)
                      +++||++|.|+++|+++|.+.
T Consensus       139 ~~vSA~~g~gi~~L~~~I~ke  159 (160)
T d1xzpa2         139 VKISALKGEGLEKLEESIYRE  159 (160)
T ss_dssp             EEEEGGGTCCHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHhc
Confidence            999999999999999999764

>d1g7sa4 c.37.1.8 (A:1-227) Initiation factor IF2/eIF5b, N-terminal (G) domain {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Initiation factor IF2/eIF5b, N-terminal (G) domain
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=99.89  E-value=8e-23  Score=144.92  Aligned_cols=170  Identities=16%  Similarity=0.194  Sum_probs=106.1

Q ss_pred             EEEEEcCCCCCHHHHHHHHhhCCCCCCCCCceeeee-eEE----------------EEECCeEEEEEEEeCCCccccccc
Q 036449            8 KCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNF-SAN----------------VVVNGSTVNLGLWDTAGQEDYNRL   70 (197)
Q Consensus         8 ~i~v~G~~~~GKstli~~~~~~~~~~~~~~~~~~~~-~~~----------------~~~~~~~~~~~i~D~~G~~~~~~~   70 (197)
                      .|+++|++++|||||+++++.........+...... ...                ..+......+.++||||+..|...
T Consensus         7 ~IaIiGh~d~GKSTL~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iDtPGh~~f~~~   86 (227)
T d1g7sa4           7 IVSVLGHVDHGKTTLLDHIRGSAVASREAGGITQHIGATEIPMDVIEGICGDFLKKFSIRETLPGLFFIDTPGHEAFTTL   86 (227)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHHHSCC----CCCBTTEEEEEHHHHHHHSCGGGGGCGGGGTCCEEEEECCCTTSCCTTS
T ss_pred             EEEEEeCCCccHHHHHHHHHhhcchheecCceeeeccccccccccccccccccccceeecccccccccccccceeccccc
Confidence            399999999999999999986432211111110000 000                011222346779999999999888


Q ss_pred             cccCcCCCcEEEEEEeCCCchhHHHHHHHHHHHHhhhCCCCCEEEEeeCCcccCCcccccCCCC-------CCccc---H
Q 036449           71 RPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLRDDKQFFIDHPG-------AVPIS---T  140 (197)
Q Consensus        71 ~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~-------~~~~~---~  140 (197)
                      ....+..+|++|+|+|+.++-..+.  ...+..+...  +.|+++|+||+|+............       ...+.   .
T Consensus        87 ~~~~~~~~D~~ilVvda~~g~~~~~--~~~~~~~~~~--~~p~iivlNK~D~~~~~~~~~~~~~~~~~~~~~~~v~~~~~  162 (227)
T d1g7sa4          87 RKRGGALADLAILIVDINEGFKPQT--QEALNILRMY--RTPFVVAANKIDRIHGWRVHEGRPFMETFSKQDIQVQQKLD  162 (227)
T ss_dssp             BCSSSBSCSEEEEEEETTTCCCHHH--HHHHHHHHHT--TCCEEEEEECGGGSTTCCCCTTCCHHHHHTTSCHHHHHHHH
T ss_pred             chhcccccceEEEEEecccCcccch--hHHHHHhhcC--CCeEEEEEECccCCCchhhhhhHHHHHhhhcchHHHHHHHH
Confidence            8888999999999999988655443  3445555555  7899999999999764421100000       00000   0


Q ss_pred             HHH----HHHHHH-------------hCCCceEEeccCCCCCHHHHHHHHHHHHcCCC
Q 036449          141 AQG----EELRKL-------------IGAPAYIECSSKTQQNVKAVFDAAIRVVLQPP  181 (197)
Q Consensus       141 ~~~----~~~~~~-------------~~~~~~~~~sa~~~~~i~~l~~~i~~~~~~~~  181 (197)
                      ...    ..+...             .+..+++++||++|.|+++|++.|.....+..
T Consensus       163 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~pvSa~~G~gid~Ll~~l~~l~~~~~  220 (227)
T d1g7sa4         163 TKVYELVGKLHEEGFESERFDRVTDFASQVSIIPISAITGEGIPELLTMLMGLAQQYL  220 (227)
T ss_dssp             HHHHHHHHHHHHTTCEEEEGGGCSCTTTEEEEEECCTTTCTTHHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHhhhhhhhhcccccccCCCeEEEeeCCCCCCHHHHHHHHHHHHHHHH
Confidence            001    111110             11126899999999999999999988765443

>d2cxxa1 c.37.1.8 (A:2-185) GTP-binding protein engB {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein engB
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=99.88  E-value=1.1e-21  Score=134.75  Aligned_cols=151  Identities=16%  Similarity=0.153  Sum_probs=96.3

Q ss_pred             EEEEEcCCCCCHHHHHHHHhhCCCCCC-CCCceeeeeeEEEEECCeEEEEEEEeCCCcccc---------------cccc
Q 036449            8 KCVTVGDGAVGKTCLLISYTSNTFPTD-YVPTVFDNFSANVVVNGSTVNLGLWDTAGQEDY---------------NRLR   71 (197)
Q Consensus         8 ~i~v~G~~~~GKstli~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~---------------~~~~   71 (197)
                      .|+++|.+|||||||+|++.+...... ++.++..  .......+    +.+||+||....               ....
T Consensus         2 ~I~lvG~~nvGKSsLin~l~~~~~~~~~~~g~T~~--~~~~~~~~----~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~   75 (184)
T d2cxxa1           2 TIIFAGRSNVGKSTLIYRLTGKKVRRGKRPGVTRK--IIEIEWKN----HKIIDMPGFGFMMGLPKEVQERIKDEIVHFI   75 (184)
T ss_dssp             EEEEEEBTTSSHHHHHHHHHSCCCSSSSSTTCTTS--CEEEEETT----EEEEECCCBSCCTTSCHHHHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCceeeCCCCEeec--cccccccc----ceecccCCceeccccccccccccchhhhhhh
Confidence            589999999999999999998665332 2223322  12222333    468999994211               1112


Q ss_pred             ccCcCCCcEEEEEEeCCCchhHHHH---------HHHHHHHHhhhCCCCCEEEEeeCCcccCCcccccCCCCCCcccHHH
Q 036449           72 PLSYRGADVFILAFSLISKASYENV---------SKKWIPELKHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPISTAQ  142 (197)
Q Consensus        72 ~~~~~~~~~~i~v~d~~~~~s~~~~---------~~~~~~~i~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~  142 (197)
                      ...++.+|++++|+|.+.+......         ...+...+...  +.|+++|+||+|+.+...             ..
T Consensus        76 ~~~~~~~d~~~~vvD~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~--~~p~iiv~NK~D~~~~~~-------------~~  140 (184)
T d2cxxa1          76 EDNAKNIDVAVLVVDGKAAPEIIKRWEKRGEIPIDVEFYQFLREL--DIPTIVAVNKLDKIKNVQ-------------EV  140 (184)
T ss_dssp             HHHGGGCCEEEEEEETTHHHHHHHHHHHTTCCCHHHHHHHHHHHT--TCCEEEEEECGGGCSCHH-------------HH
T ss_pred             hhcccccchheeeeeccccchhhhhhhhccccHHHHHHHHHHHHc--CCCEEEEEeeeehhhhHH-------------HH
Confidence            2345678999999998754322211         11234444444  799999999999865332             11


Q ss_pred             HHHHHHHhCC------CceEEeccCCCCCHHHHHHHHHHHHcC
Q 036449          143 GEELRKLIGA------PAYIECSSKTQQNVKAVFDAAIRVVLQ  179 (197)
Q Consensus       143 ~~~~~~~~~~------~~~~~~sa~~~~~i~~l~~~i~~~~~~  179 (197)
                      ...+....+.      ..++++||++|.|+++++++|.+.+.+
T Consensus       141 ~~~~~~~~~~~~~~~~~~~~~vSA~~g~gi~~L~~~i~~~l~e  183 (184)
T d2cxxa1         141 INFLAEKFEVPLSEIDKVFIPISAKFGDNIERLKNRIFEVIRE  183 (184)
T ss_dssp             HHHHHHHHTCCGGGHHHHEEECCTTTCTTHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhcccccccCCeEEEEECCCCCCHHHHHHHHHHHccC
Confidence            2222222222      147899999999999999999987753

>d2fh5b1 c.37.1.8 (B:63-269) Signal recognition particle receptor beta-subunit {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Signal recognition particle receptor beta-subunit
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.88  E-value=4.2e-22  Score=139.37  Aligned_cols=117  Identities=17%  Similarity=0.171  Sum_probs=86.1

Q ss_pred             EEEEEcCCCCCHHHHHHHHhhCCCCCCCCCceeeeeeEEEEECCeEEEEEEEeCCCccccc-cccccCcCCCcEEEEEEe
Q 036449            8 KCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQEDYN-RLRPLSYRGADVFILAFS   86 (197)
Q Consensus         8 ~i~v~G~~~~GKstli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~-~~~~~~~~~~~~~i~v~d   86 (197)
                      +|+++|++|||||||+++|..+.+...+ ++...............+.+.+||++|++.+. ..+..++..++++++|+|
T Consensus         2 ~V~ivG~~~~GKTsLl~~l~~~~~~~~~-~t~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~~i~v~D   80 (207)
T d2fh5b1           2 AVLFVGLCDSGKTLLFVRLLTGQYRDTQ-TSITDSSAIYKVNNNRGNSLTLIDLPGHESLRFQLLDRFKSSARAVVFVVD   80 (207)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHSCCCCBC-CCCSCEEEEEECSSTTCCEEEEEECCCCHHHHHHHHHHHGGGEEEEEEEEE
T ss_pred             EEEEECCCCCCHHHHHHHHHcCCCCccc-CCeeEEEEEEEEeeeeeeeeeeeeccccccccchhhhhhhhhccccceEEE
Confidence            6999999999999999999998876654 44443333322234456788999999998875 466778889999999999


Q ss_pred             CCCchhH-HHHHHHHHHHHhhh---CCCCCEEEEeeCCcccCC
Q 036449           87 LISKASY-ENVSKKWIPELKHY---APGVPIILVGTKLDLRDD  125 (197)
Q Consensus        87 ~~~~~s~-~~~~~~~~~~i~~~---~~~~~~ivv~nK~D~~~~  125 (197)
                      +++..++ .+....+...+...   ..++|++||+||+|+...
T Consensus        81 ~~d~~~~~~~~~~~l~~~l~~~~~~~~~~pilvv~NK~Dl~~a  123 (207)
T d2fh5b1          81 SAAFQREVKDVAEFLYQVLIDSMALKNSPSLLIACNKQDIAMA  123 (207)
T ss_dssp             TTTHHHHHHHHHHHHHHHHHHHHTSTTCCEEEEEEECTTSTTC
T ss_pred             cccccccHHHHHHHHHHHHHhHHHhhcCCcEEEEEECcccCCC
Confidence            9997764 34423344444322   246899999999999754

>d1azta2 c.37.1.8 (A:35-65,A:202-391) Transducin (alpha subunit) {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.87  E-value=5.4e-22  Score=140.08  Aligned_cols=168  Identities=16%  Similarity=0.170  Sum_probs=115.7

Q ss_pred             ceeEEEEEcCCCCCHHHHHHHHhhCCCCCCCCCceeeeeeEEEEECCeEEEEEEEeCCCccccccccccCcCCCcEEEEE
Q 036449            5 RFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILA   84 (197)
Q Consensus         5 ~~~~i~v~G~~~~GKstli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v   84 (197)
                      +.+||+++|..|||||||++++..+.+    .||.+.. ...+.+++  +.+++||++|++.++..|..++..+++++++
T Consensus         5 ~~~KilllG~~~vGKTsll~~~~~~~~----~pTiG~~-~~~~~~~~--~~~~~~D~~Gq~~~r~~w~~~~~~~~~ii~v   77 (221)
T d1azta2           5 ATHRLLLLGAGESGKSTIVKQMRILHV----VLTSGIF-ETKFQVDK--VNFHMFDVGGQRDERRKWIQCFNDVTAIIFV   77 (221)
T ss_dssp             HSEEEEEECSTTSSHHHHHHHHHHHHC----CCCCSCE-EEEEEETT--EEEEEEECCCSTTTTTGGGGGCTTCSEEEEE
T ss_pred             hcCEEEEECCCCCCHHHHHHHHhcCCc----CCCCCeE-EEEEEECc--EEEEEEecCccceeccchhhhcccccceEEE
Confidence            568999999999999999999976644    3555522 23344555  7788999999999999999999999999999


Q ss_pred             EeCCCch----------hHHHHHHHHHHHHhhhC-CCCCEEEEeeCCcccCCcccc---------cCCC---C-------
Q 036449           85 FSLISKA----------SYENVSKKWIPELKHYA-PGVPIILVGTKLDLRDDKQFF---------IDHP---G-------  134 (197)
Q Consensus        85 ~d~~~~~----------s~~~~~~~~~~~i~~~~-~~~~~ivv~nK~D~~~~~~~~---------~~~~---~-------  134 (197)
                      +|.++..          ...+....|...+.... +++|++|++||+|+.+.....         .+..   .       
T Consensus        78 ~d~s~~~~~~~~~~~~~r~~e~~~~~~~il~~~~~~~~~iil~~NK~Dl~~~k~~~~~~~~~~~f~~~~~~~~~~~~~~~  157 (221)
T d1azta2          78 VASSSYNMVIREDNQTNRLQEALNLFKSIWNNRWLRTISVILFLNKQDLLAEKVLAGKSKIEDYFPEFARYTTPEDATPE  157 (221)
T ss_dssp             EETTGGGCBCTTTSCSBHHHHHHHHHHHHHTCGGGSSCEEEEEEECHHHHHHHHHHCSSCHHHHCGGGGGCCCCTTCCCC
T ss_pred             EEccccccccccccchHHHHHHHHHHHHHhcChhhCCCcEEEEechhhhhhhhhccCcccHHHhCccccccCCccccccc
Confidence            9998642          34444356666676655 789999999999996543210         0000   0       


Q ss_pred             -CCcccHHHHH-----HHHHHhCC-------CceEEeccCCCCCHHHHHHHHHHHHcC
Q 036449          135 -AVPISTAQGE-----ELRKLIGA-------PAYIECSSKTQQNVKAVFDAAIRVVLQ  179 (197)
Q Consensus       135 -~~~~~~~~~~-----~~~~~~~~-------~~~~~~sa~~~~~i~~l~~~i~~~~~~  179 (197)
                       ....+..++.     .+.+....       ...++|||+++.+++.+|+.+...+.+
T Consensus       158 ~g~~~~~~~a~~~i~~~f~~~~~~~~~~~~~~y~h~T~A~Dt~ni~~vf~~v~d~I~~  215 (221)
T d1azta2         158 PGEDPRVTRAKYFIRDEFLRISTASGDGRHYCYPHFTCAVDTENIRRVFNDCRDIIQR  215 (221)
T ss_dssp             TTCCHHHHHHHHHHHHHHHHHHTSSCTTSCCEEEEECCTTCHHHHHHHHHTTHHHHHH
T ss_pred             CCCchhHHHHHHHHHHHHHHHhccCCCCCCceeeeecceeccHHHHHHHHHHHHHHHH
Confidence             0011122222     22222211       124579999999999999887666553

>d1svia_ c.37.1.8 (A:) Probable GTPase EngB {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngB
species: Bacillus subtilis [TaxId: 1423]

Probab=99.87  E-value=9.6e-22  Score=136.30  Aligned_cols=155  Identities=17%  Similarity=0.179  Sum_probs=94.8

Q ss_pred             ceeEEEEEcCCCCCHHHHHHHHhhCCCCCCCCCceeeee-eEEEEECCeEEEEEEEeCCCcccc-------------ccc
Q 036449            5 RFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNF-SANVVVNGSTVNLGLWDTAGQEDY-------------NRL   70 (197)
Q Consensus         5 ~~~~i~v~G~~~~GKstli~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~D~~G~~~~-------------~~~   70 (197)
                      ...+|+++|.+|||||||++++.+............... ........   .+.+.|++|....             ...
T Consensus        22 ~~~~I~lvG~~n~GKSTLin~L~g~~~~~~~~~~~~~t~~~~~~~~~~---~~~~~d~~~~~~~~~~~~~~~~~~~~~~~   98 (195)
T d1svia_          22 GLPEIALAGRSNVGKSSFINSLINRKNLARTSSKPGKTQTLNFYIIND---ELHFVDVPGYGFAKVSKSEREAWGRMIET   98 (195)
T ss_dssp             CCCEEEEEEBTTSSHHHHHHHHHTC-------------CCEEEEEETT---TEEEEECCCBCCCSSCHHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCCCCHHHHHHHhcCCCceEEeecccceeeecccccccc---cceEEEEEeeccccccccccchhhhHHhh
Confidence            445899999999999999999997543211111111111 11112222   2335666652111             112


Q ss_pred             cccCcCCCcEEEEEEeCCCchhHHHHHHHHHHHHhhhCCCCCEEEEeeCCcccCCcccccCCCCCCcccHHHHHHHHHHh
Q 036449           71 RPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPISTAQGEELRKLI  150 (197)
Q Consensus        71 ~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  150 (197)
                      .......++++++++|++.+...++  ..++..+...  +.|+++|+||+|+.+...          . .+....+.+.+
T Consensus        99 ~~~~~~~~~~vi~viD~~~~~~~~~--~~~~~~l~~~--~~piivv~NK~D~~~~~~----------~-~~~~~~~~~~l  163 (195)
T d1svia_          99 YITTREELKAVVQIVDLRHAPSNDD--VQMYEFLKYY--GIPVIVIATKADKIPKGK----------W-DKHAKVVRQTL  163 (195)
T ss_dssp             HHHHCTTEEEEEEEEETTSCCCHHH--HHHHHHHHHT--TCCEEEEEECGGGSCGGG----------H-HHHHHHHHHHH
T ss_pred             hhccccchhhhhhhhhccccccccc--cccccccccc--cCcceechhhccccCHHH----------H-HHHHHHHHHHh
Confidence            2234556799999999987655433  3666667666  789999999999865432          1 22222333322


Q ss_pred             ---CCCceEEeccCCCCCHHHHHHHHHHHH
Q 036449          151 ---GAPAYIECSSKTQQNVKAVFDAAIRVV  177 (197)
Q Consensus       151 ---~~~~~~~~sa~~~~~i~~l~~~i~~~~  177 (197)
                         ...+++++||++|.|+++++++|.+.+
T Consensus       164 ~~~~~~~~~~~SA~~~~gi~el~~~i~~~l  193 (195)
T d1svia_         164 NIDPEDELILFSSETKKGKDEAWGAIKKMI  193 (195)
T ss_dssp             TCCTTSEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred             cccCCCCEEEEeCCCCCCHHHHHHHHHHHh
Confidence               333689999999999999999998876

>d1kk1a3 c.37.1.8 (A:6-200) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Archaeon Pyrococcus abyssi [TaxId: 29292]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain
species: Archaeon Pyrococcus abyssi [TaxId: 29292]

Probab=99.86  E-value=9.5e-22  Score=136.30  Aligned_cols=166  Identities=18%  Similarity=0.101  Sum_probs=106.4

Q ss_pred             CCCceeEEEEEcCCCCCHHHHHHHHhhCCCCCCCC-----CceeeeeeE-EE-------------------EECCeEEEE
Q 036449            2 SASRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYV-----PTVFDNFSA-NV-------------------VVNGSTVNL   56 (197)
Q Consensus         2 ~~~~~~~i~v~G~~~~GKstli~~~~~~~~~~~~~-----~~~~~~~~~-~~-------------------~~~~~~~~~   56 (197)
                      |.++.++|+++|+.++|||||+++|++........     .+....+.. ..                   ........+
T Consensus         1 ~~~~~inIaiiGhvd~GKSTL~~~L~g~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (195)
T d1kk1a3           1 SRQAEVNIGMVGHVDHGKTTLTKALTGVWTDTHSEELRRGITIKIGFADAEIRRCPNCGRYSTSPVCPYCGHETEFVRRV   80 (195)
T ss_dssp             CCSEEEEEEEECSTTSSHHHHHHHHHTCCCC--CGGGGSCSSSCCEEEEEEEEECTTTCCEESSSBCTTTCCBCEEEEEE
T ss_pred             CCCCcEEEEEEeccCCcHHHHHHHHHhhhhhhhHHHHHcCcccccchhhhhhhccchhhhccceeeeeeeeeeecCceeE
Confidence            35678999999999999999999998643211100     000000000 00                   001124568


Q ss_pred             EEEeCCCccccccccccCcCCCcEEEEEEeCCCchhHHHHHHHHHHHHhhhCCCCCEEEEeeCCcccCCcccccCCCCCC
Q 036449           57 GLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLRDDKQFFIDHPGAV  136 (197)
Q Consensus        57 ~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~  136 (197)
                      .++|+||+..|.......+..+|++++|+|+.++...+.. ...+..+.... ..+++++.||+|+.+....        
T Consensus        81 ~~iDtPGh~~f~~~~~~~~~~~d~~ilvvda~~g~~~~~t-~e~~~~~~~~~-~~~iiv~inK~D~~d~~~~--------  150 (195)
T d1kk1a3          81 SFIDAPGHEALMTTMLAGASLMDGAILVIAANEPCPRPQT-REHLMALQIIG-QKNIIIAQNKIELVDKEKA--------  150 (195)
T ss_dssp             EEEECSSHHHHHHHHHHCGGGCSEEEEEEETTSCSSCHHH-HHHHHHHHHHT-CCCEEEEEECGGGSCHHHH--------
T ss_pred             eeeccchhhhhhHHhhcccccccccccccchhhhhhhhhh-HHHHHHHHHhc-CccceeeeecccchhhHHH--------
Confidence            8999999999988888888899999999999886432222 23333444331 2357888999999764320        


Q ss_pred             cccHHHHHHHHHHhCC--CceEEeccCCCCCHHHHHHHHHHHH
Q 036449          137 PISTAQGEELRKLIGA--PAYIECSSKTQQNVKAVFDAAIRVV  177 (197)
Q Consensus       137 ~~~~~~~~~~~~~~~~--~~~~~~sa~~~~~i~~l~~~i~~~~  177 (197)
                      ....+...++....+.  .+++++||++|+|+++|++.|.+.+
T Consensus       151 ~~~~~~~~~~~~~~~~~~~~iIpiSA~~G~ni~~Ll~~I~~~i  193 (195)
T d1kk1a3         151 LENYRQIKEFIEGTVAENAPIIPISALHGANIDVLVKAIEDFI  193 (195)
T ss_dssp             HHHHHHHHHHHTTSTTTTCCEEECBTTTTBSHHHHHHHHHHHS
T ss_pred             HHHHHHHHHHhccccCCCCeEEEEECCCCCCHHHHHHHHHHHC
Confidence            0112233344433322  3789999999999999999988754

>d2qn6a3 c.37.1.8 (A:2-206) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain
species: Sulfolobus solfataricus [TaxId: 2287]

Probab=99.86  E-value=1.9e-21  Score=135.74  Aligned_cols=166  Identities=16%  Similarity=0.062  Sum_probs=103.9

Q ss_pred             CceeEEEEEcCCCCCHHHHHHHHhhCCCCCC-----CCCce-eeeeeEEEEE------------------------CCeE
Q 036449            4 SRFIKCVTVGDGAVGKTCLLISYTSNTFPTD-----YVPTV-FDNFSANVVV------------------------NGST   53 (197)
Q Consensus         4 ~~~~~i~v~G~~~~GKstli~~~~~~~~~~~-----~~~~~-~~~~~~~~~~------------------------~~~~   53 (197)
                      ++.++|+++|+.++|||||+++|++......     ...+. ..........                        ....
T Consensus         6 ~p~ini~iiGhVd~GKSTL~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   85 (205)
T d2qn6a3           6 QPEVNIGVVGHVDHGKTTLVQAITGIWTSKHSEELKRGMTIKLGYAETNIGVCESCKKPEAYVTEPSCKSCGSDDEPKFL   85 (205)
T ss_dssp             CCCEEEEEECSTTSSHHHHHHHHHSCCC--------------CEEEEEEEEECTTSCTTTTEESSSCCGGGTCCSCCEEE
T ss_pred             CCCeEEEEEEccCCcHHHHHHHHHhhhchhhHHHHHhhcccccchhhhhhhhhhhhhhhheeeecccceeeeeeccccce
Confidence            4669999999999999999999985322100     00000 0000000000                        1123


Q ss_pred             EEEEEEeCCCccccccccccCcCCCcEEEEEEeCCCchhHHHHHHHHHHHHhhhCCCCCEEEEeeCCcccCCcccccCCC
Q 036449           54 VNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLRDDKQFFIDHP  133 (197)
Q Consensus        54 ~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~~~ivv~nK~D~~~~~~~~~~~~  133 (197)
                      ..+.++|+||+..|.......+..+|++|+|+|+.++-.-... ...+..+... .-.|++|+.||+|+......     
T Consensus        86 r~~~iiD~PGH~df~~~~~~~~~~ad~ailvVda~~gi~~~~t-~e~~~~~~~~-~i~~iIV~vNK~Dl~~~~~~-----  158 (205)
T d2qn6a3          86 RRISFIDAPGHEVLMATMLSGAALMDGAILVVAANEPFPQPQT-REHFVALGII-GVKNLIIVQNKVDVVSKEEA-----  158 (205)
T ss_dssp             EEEEEEECSCHHHHHHHHHHTSSCCSEEEEEEETTSCSSCHHH-HHHHHHHHHT-TCCCEEEEEECGGGSCHHHH-----
T ss_pred             EEEEEeccchHHHHHhhhhcceeccccccccccccccccchhH-HHHHHHHHHc-CCceeeeccccCCCccchHH-----
Confidence            4688999999999988777788899999999999886321222 2223333333 12488999999999764320     


Q ss_pred             CCCcccHHHHHHHHHHhC--CCceEEeccCCCCCHHHHHHHHHHHHcC
Q 036449          134 GAVPISTAQGEELRKLIG--APAYIECSSKTQQNVKAVFDAAIRVVLQ  179 (197)
Q Consensus       134 ~~~~~~~~~~~~~~~~~~--~~~~~~~sa~~~~~i~~l~~~i~~~~~~  179 (197)
                         .........+.....  ..+++++||++|.|++++++.|.+.+..
T Consensus       159 ---~~~~~~~~~~l~~~~~~~~p~ipiSA~~g~nI~~L~e~i~~~ip~  203 (205)
T d2qn6a3         159 ---LSQYRQIKQFTKGTWAENVPIIPVSALHKINIDSLIEGIEEYIKT  203 (205)
T ss_dssp             ---HHHHHHHHHHHTTSTTTTCCEEECBTTTTBSHHHHHHHHHHHSCC
T ss_pred             ---HHHHHHHHHHhccccCCCCeEEEEeCCCCCChHHHHHHHHhhCCC
Confidence               011122233333222  2378999999999999999999887543

>d1lnza2 c.37.1.8 (A:158-342) Obg GTP-binding protein middle domain {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Obg GTP-binding protein middle domain
species: Bacillus subtilis [TaxId: 1423]

Probab=99.85  E-value=3.3e-22  Score=137.57  Aligned_cols=158  Identities=18%  Similarity=0.197  Sum_probs=96.8

Q ss_pred             EEEEEcCCCCCHHHHHHHHhhCCCC-CCCCCceeeeeeEEEEE-CCeEEEEEEEeCCCcccccc----cccc---CcCCC
Q 036449            8 KCVTVGDGAVGKTCLLISYTSNTFP-TDYVPTVFDNFSANVVV-NGSTVNLGLWDTAGQEDYNR----LRPL---SYRGA   78 (197)
Q Consensus         8 ~i~v~G~~~~GKstli~~~~~~~~~-~~~~~~~~~~~~~~~~~-~~~~~~~~i~D~~G~~~~~~----~~~~---~~~~~   78 (197)
                      +|+++|.+|||||||++++.+.... ..+.+++.........+ ++  ..+++|||||..+...    ....   .+..+
T Consensus         3 ~VaiiG~~nvGKSSLin~L~~~~~~~~~~~~~T~~~~~~~~~~~~~--~~~~~~DtpG~~~~~~~~~~~~~~~l~~~~~~   80 (185)
T d1lnza2           3 DVGLVGFPSVGKSTLLSVVSSAKPKIADYHFTTLVPNLGMVETDDG--RSFVMADLPGLIEGAHQGVGLGHQFLRHIERT   80 (185)
T ss_dssp             CEEEESSTTSSHHHHHHHSEEECCEESSTTSSCCCCCEEEEECSSS--CEEEEEEHHHHHHHTTCTTTTHHHHHHHHHHC
T ss_pred             eEEEECCCCCCHHHHHHHHhCCCCceecCCCceEeeeeceeEecCC--cEEEEecCCCcccCchHHHHHHHHHHHHHHHh
Confidence            6999999999999999999875532 22333332222222222 33  3467999999632211    1111   23457


Q ss_pred             cEEEEEEeCCCchhHHHH--HHHHHHHHhhh---CCCCCEEEEeeCCcccCCcccccCCCCCCcccHHHHHHHHHHh--C
Q 036449           79 DVFILAFSLISKASYENV--SKKWIPELKHY---APGVPIILVGTKLDLRDDKQFFIDHPGAVPISTAQGEELRKLI--G  151 (197)
Q Consensus        79 ~~~i~v~d~~~~~s~~~~--~~~~~~~i~~~---~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~  151 (197)
                      +.++++++..........  ...+.......   ..+.|+++|+||+|+....              +....+.+..  +
T Consensus        81 ~~i~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kp~ivv~NK~Dl~~~~--------------~~~~~~~~~~~~~  146 (185)
T d1lnza2          81 RVIVHVIDMSGLEGRDPYDDYLTINQELSEYNLRLTERPQIIVANKMDMPEAA--------------ENLEAFKEKLTDD  146 (185)
T ss_dssp             CEEEEEEESSCSSCCCHHHHHHHHHHHHHHSCSSTTTSCBCBEEECTTSTTHH--------------HHHHHHHHHCCSC
T ss_pred             hhhhheeeecccccchhhhhhhhhhhccchhhhhccCCcchhhccccchHhHH--------------HHHHHHHHHhccC
Confidence            888888876544332211  11111111111   1478999999999996532              2223333333  3


Q ss_pred             CCceEEeccCCCCCHHHHHHHHHHHHcCCCc
Q 036449          152 APAYIECSSKTQQNVKAVFDAAIRVVLQPPK  182 (197)
Q Consensus       152 ~~~~~~~sa~~~~~i~~l~~~i~~~~~~~~~  182 (197)
                      . +++.+||++|.|++++++.|.+.+.+.++
T Consensus       147 ~-~v~~iSA~~g~Gi~~L~~~i~~~L~~~p~  176 (185)
T d1lnza2         147 Y-PVFPISAVTREGLRELLFEVANQLENTPE  176 (185)
T ss_dssp             C-CBCCCSSCCSSTTHHHHHHHHHHHTSCCC
T ss_pred             C-cEEEEECCCCCCHHHHHHHHHHhhhhCCC
Confidence            3 78999999999999999999999876543

>d1d2ea3 c.37.1.8 (A:55-250) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Cow (Bos taurus), mitochondrial [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain
species: Cow (Bos taurus), mitochondrial [TaxId: 9913]

Probab=99.84  E-value=8.8e-21  Score=130.86  Aligned_cols=163  Identities=18%  Similarity=0.111  Sum_probs=106.6

Q ss_pred             ceeEEEEEcCCCCCHHHHHHHHhhC-----CCCCC------CCCce---eee-eeEEEEECCeEEEEEEEeCCCcccccc
Q 036449            5 RFIKCVTVGDGAVGKTCLLISYTSN-----TFPTD------YVPTV---FDN-FSANVVVNGSTVNLGLWDTAGQEDYNR   69 (197)
Q Consensus         5 ~~~~i~v~G~~~~GKstli~~~~~~-----~~~~~------~~~~~---~~~-~~~~~~~~~~~~~~~i~D~~G~~~~~~   69 (197)
                      +.++|+++|+.++|||||+++++..     .....      ..+..   +-+ ......+......+.++|+||+..|..
T Consensus         2 p~ini~iiGHvd~GKSTL~~~l~~~~~~~~~~~~~~~~~~~~~~~Er~rgiTi~~~~~~~~~~~~~~~~iDtPGh~~f~~   81 (196)
T d1d2ea3           2 PHVNVGTIGHVDHGKTTLTAAITKILAEGGGAKFKKYEEIDNAPEERARGITINAAHVEYSTAARHYAHTDCPGHADYVK   81 (196)
T ss_dssp             CEEEEEEESSTTSSHHHHHHHHHHHHHHTTSBCCCCHHHHHSCCEEEETTEEEECEEEEEECSSCEEEEEECSSHHHHHH
T ss_pred             CCcEEEEEeCCCCcHHHHHHHHHHHHHHcCcchhhhhhhcccchhhcCCCccCCcceEEEEeceeeEEeecCcchHHHHH
Confidence            5699999999999999999998741     10000      00000   000 111122233335677999999999988


Q ss_pred             ccccCcCCCcEEEEEEeCCCchhHHHHHHHHHHHHhhhCCCCCEEEEeeCCcccCCcccccCCCCCCcccHHHHHHHHHH
Q 036449           70 LRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPISTAQGEELRKL  149 (197)
Q Consensus        70 ~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~  149 (197)
                      .....+..+|++++|+|+.++..-+..  +.+..+... ...|+|++.||+|+..+..       ....-..+.+.+...
T Consensus        82 ~~~~~~~~aD~allVVda~~G~~~QT~--~~~~~a~~~-~~~~iIv~iNK~D~~~~~~-------~~~~i~~~i~~~l~~  151 (196)
T d1d2ea3          82 NMITGTAPLDGCILVVAANDGPMPQTR--EHLLLARQI-GVEHVVVYVNKADAVQDSE-------MVELVELEIRELLTE  151 (196)
T ss_dssp             HHHHTSSCCSEEEEEEETTTCSCHHHH--HHHHHHHHT-TCCCEEEEEECGGGCSCHH-------HHHHHHHHHHHHHHH
T ss_pred             HHHHHHhhcCeEEEEEEcCCCCchhHH--HHHHHHHHh-cCCcEEEEEecccccccHH-------HHHHHHHHHHHHHHH
Confidence            888888999999999999987655433  333333333 1357899999999965432       001112344555555


Q ss_pred             hCC----CceEEeccCCC----------CCHHHHHHHHHHHH
Q 036449          150 IGA----PAYIECSSKTQ----------QNVKAVFDAAIRVV  177 (197)
Q Consensus       150 ~~~----~~~~~~sa~~~----------~~i~~l~~~i~~~~  177 (197)
                      ++.    .+++++||++|          .++.+|++.|.+.+
T Consensus       152 ~~~~~~~~pii~iSa~~g~~~~~~~~~~~~~~~Lldai~~~i  193 (196)
T d1d2ea3         152 FGYKGEETPIIVGSALCALEQRDPELGLKSVQKLLDAVDTYI  193 (196)
T ss_dssp             TTSCTTTSCEEECCHHHHHTTCCTTTTHHHHHHHHHHHHHHS
T ss_pred             hCCCcccCEEEEEEccccccccCcccccCCHHHHHHHHHhhC
Confidence            554    36999999998          58899998887654

>d1egaa1 c.37.1.8 (A:4-182) GTPase Era, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Era, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=99.83  E-value=6.4e-20  Score=125.18  Aligned_cols=157  Identities=17%  Similarity=0.110  Sum_probs=104.5

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhhCCCC--CCCCCceeeeeeEEEEECCeEEEEEEEeCCCccc---------cccccccCc
Q 036449            7 IKCVTVGDGAVGKTCLLISYTSNTFP--TDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQED---------YNRLRPLSY   75 (197)
Q Consensus         7 ~~i~v~G~~~~GKstli~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~---------~~~~~~~~~   75 (197)
                      =.|+++|.+|||||||+++|.+....  .....+...........+.  ..+..||++|...         +........
T Consensus         6 ~~I~iiG~~nvGKSSLin~L~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   83 (179)
T d1egaa1           6 GFIAIVGRPNVGKSTLLNKLLGQKISITSRKAQTTRHRIVGIHTEGA--YQAIYVDTPGLHMEEKRAINRLMNKAASSSI   83 (179)
T ss_dssp             EEEEEECSSSSSHHHHHHHHHTCSEEECCCCSSCCSSCEEEEEEETT--EEEEEESSSSCCHHHHHHHHHHHTCCTTSCC
T ss_pred             cEEEEECCCCCCHHHHHHHHhCCCceeeccCCCceEEEEEeeeecCC--ceeEeecCCCceecchhhhhhhhhhccccch
Confidence            35899999999999999999976543  2222222333333344444  3455788888432         123333345


Q ss_pred             CCCcEEEEEEeCCCchhHHHHHHHHHHHHhhhCCCCCEEEEeeCCcccCCcccccCCCCCCcccHHHHHHHHHHhCCCce
Q 036449           76 RGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPISTAQGEELRKLIGAPAY  155 (197)
Q Consensus        76 ~~~~~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  155 (197)
                      ..+++++++.|..+......   .+...+...  ..|.++++||.|......          ........+...++..++
T Consensus        84 ~~~~~~l~~~d~~~~~~~~~---~~~~~l~~~--~~~~i~v~~k~d~~~~~~----------~~~~~~~~~~~~~~~~~~  148 (179)
T d1egaa1          84 GDVELVIFVVEGTRWTPDDE---MVLNKLREG--KAPVILAVNKVDNVQEKA----------DLLPHLQFLASQMNFLDI  148 (179)
T ss_dssp             CCEEEEEEEEETTCCCHHHH---HHHHHHHSS--SSCEEEEEESTTTCCCHH----------HHHHHHHHHHTTSCCSEE
T ss_pred             hhcceeEEEEecCccchhHH---HHHHHhhhc--cCceeeeeeeeeccchhh----------hhhhHhhhhhhhcCCCCE
Confidence            56788889999876543322   233333333  678999999999876543          223455666777777789


Q ss_pred             EEeccCCCCCHHHHHHHHHHHHcCC
Q 036449          156 IECSSKTQQNVKAVFDAAIRVVLQP  180 (197)
Q Consensus       156 ~~~sa~~~~~i~~l~~~i~~~~~~~  180 (197)
                      +++||++|.|+++|++.|.+.+.+.
T Consensus       149 ~~vSA~~g~gi~~L~~~i~~~lpe~  173 (179)
T d1egaa1         149 VPISAETGLNVDTIAAIVRKHLPEA  173 (179)
T ss_dssp             EECCTTTTTTHHHHHHHHHTTCCBC
T ss_pred             EEEeCcCCCCHHHHHHHHHHhCCCC
Confidence            9999999999999999998887543

>d2c78a3 c.37.1.8 (A:9-212) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain
species: Thermus thermophilus [TaxId: 274]

Probab=99.81  E-value=6.5e-20  Score=127.48  Aligned_cols=146  Identities=19%  Similarity=0.169  Sum_probs=94.3

Q ss_pred             CceeEEEEEcCCCCCHHHHHHHHhhCC--------CCC----CCC------CceeeeeeEEEEECCeEEEEEEEeCCCcc
Q 036449            4 SRFIKCVTVGDGAVGKTCLLISYTSNT--------FPT----DYV------PTVFDNFSANVVVNGSTVNLGLWDTAGQE   65 (197)
Q Consensus         4 ~~~~~i~v~G~~~~GKstli~~~~~~~--------~~~----~~~------~~~~~~~~~~~~~~~~~~~~~i~D~~G~~   65 (197)
                      +++++|+++|+.++|||||+++++...        ...    .+.      ..+-+.....+..++  ..+.++||||+.
T Consensus         1 k~~ini~iiGhvd~GKSTL~~~Ll~~~g~~~~~~~~~~~~~~d~~~eE~~rgiTi~~~~~~~~~~~--~~i~iiDtPGh~   78 (204)
T d2c78a3           1 KPHVNVGTIGHVDHGKTTLTAALTYVAAAENPNVEVKDYGDIDKAPEERARGITINTAHVEYETAK--RHYSHVDCPGHA   78 (204)
T ss_dssp             CCEEEEEEECSTTSSHHHHHHHHHHHHHHSCTTSCCCCHHHHSCSHHHHHHTCCCSCEEEEEECSS--CEEEEEECCCSG
T ss_pred             CCCeEEEEEeCCCCcHHHHHHHHHHHhhhccCCcchhhhhhcccchHHhcCCeEEEeeEEEEEeCC--eEEEEEeCCCch
Confidence            357999999999999999999996320        000    000      011111122333445  567799999999


Q ss_pred             ccccccccCcCCCcEEEEEEeCCCchhHHHHHHHHHHHHhhhCCCCC-EEEEeeCCcccCCcccccCCCCCCcccHHHHH
Q 036449           66 DYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVP-IILVGTKLDLRDDKQFFIDHPGAVPISTAQGE  144 (197)
Q Consensus        66 ~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~~-~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~  144 (197)
                      .|.......+..+|++|+|+|+.++...+..  ..+..+...  ++| +++++||+|+.+...       .......+.+
T Consensus        79 df~~~~~~~~~~aD~avlVvda~~Gv~~qt~--~~~~~~~~~--gi~~iiv~iNK~D~~~~~~-------~~~~~~~~i~  147 (204)
T d2c78a3          79 DYIKNMITGAAQMDGAILVVSAADGPMPQTR--EHILLARQV--GVPYIVVFMNKVDMVDDPE-------LLDLVEMEVR  147 (204)
T ss_dssp             GGHHHHHHHHTTCSSEEEEEETTTCCCHHHH--HHHHHHHHT--TCCCEEEEEECGGGCCCHH-------HHHHHHHHHH
T ss_pred             hhHHHHHHHHHHCCEEEEEEECCCCCcHHHH--HHHHHHHHc--CCCeEEEEEEecccCCCHH-------HHHHHHHHHH
Confidence            9988888888999999999999998777654  344444444  666 778899999865321       0001123344


Q ss_pred             HHHHHhCC----CceEEeccCC
Q 036449          145 ELRKLIGA----PAYIECSSKT  162 (197)
Q Consensus       145 ~~~~~~~~----~~~~~~sa~~  162 (197)
                      .+...++.    .+++..|+..
T Consensus       148 ~~l~~~~~~~~~i~~i~~sa~~  169 (204)
T d2c78a3         148 DLLNQYEFPGDEVPVIRGSALL  169 (204)
T ss_dssp             HHHHHTTSCTTTSCEEECCHHH
T ss_pred             HHHHhcCCCcccceeeeeechh
Confidence            44444433    3678888754

>d1zunb3 c.37.1.8 (B:16-237) Sulfate adenylate transferase subunit cysN/C, EF-Tu domain G-like domain {Pseudomonas syringae pv. tomato [TaxId: 323]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Sulfate adenylate transferase subunit cysN/C, EF-Tu domain G-like domain
species: Pseudomonas syringae pv. tomato [TaxId: 323]

Probab=99.79  E-value=3.7e-19  Score=124.88  Aligned_cols=154  Identities=18%  Similarity=0.126  Sum_probs=98.1

Q ss_pred             CceeEEEEEcCCCCCHHHHHHHHhh--CCCCCC----------CCCce-------------------eee-eeEEEEECC
Q 036449            4 SRFIKCVTVGDGAVGKTCLLISYTS--NTFPTD----------YVPTV-------------------FDN-FSANVVVNG   51 (197)
Q Consensus         4 ~~~~~i~v~G~~~~GKstli~~~~~--~~~~~~----------~~~~~-------------------~~~-~~~~~~~~~   51 (197)
                      +..+||+++|+.++|||||+.+|+.  +.....          ...+.                   +.. .........
T Consensus         7 ~~~~~i~viGHVd~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~~~d~~~~e~~~g~ti~~~~~~~~~   86 (222)
T d1zunb3           7 KEMLRFLTCGNVDDGKSTLIGRLLHDSKMIYEDHLEAITRDSKKSGTTGDDVDLALLVDGLQAEREQGITIDVAYRYFST   86 (222)
T ss_dssp             CEEEEEEEECCTTSSHHHHHHHHHHHTTCC------------------CCC--CHHHHHHHHC-----CCCCCEEEEEEC
T ss_pred             CCcceEEEEcCCCCCHHHHHHHHHHHcCCcchHHHHHHHHHHHhcCccccceeeeeccccchhhhccCCCceeeEEEEec
Confidence            5679999999999999999999963  211110          00000                   000 000111112


Q ss_pred             eEEEEEEEeCCCccccccccccCcCCCcEEEEEEeCCCchhHHHHHHHHHHHHhhhCCCCC-EEEEeeCCcccCCccccc
Q 036449           52 STVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVP-IILVGTKLDLRDDKQFFI  130 (197)
Q Consensus        52 ~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~~-~ivv~nK~D~~~~~~~~~  130 (197)
                      ....+.++|+||+..|.......+..+|++|+|+|+.++..-+..  ..+......  +++ ++++.||+|+.+....  
T Consensus        87 ~~~~~~iiD~PGH~dfv~~~~~g~~~aD~ailVvda~~G~~~Qt~--e~~~~~~~~--gv~~iiv~vNK~D~~~~~~~--  160 (222)
T d1zunb3          87 AKRKFIIADTPGHEQYTRNMATGASTCDLAIILVDARYGVQTQTR--RHSYIASLL--GIKHIVVAINKMDLNGFDER--  160 (222)
T ss_dssp             SSEEEEEEECCCSGGGHHHHHHHHTTCSEEEEEEETTTCSCHHHH--HHHHHHHHT--TCCEEEEEEECTTTTTSCHH--
T ss_pred             cceEEEEEeccchhhhhhhhccccccCceEEEEeccccCcccchH--HHHHHHHHc--CCCEEEEEEEccccccccce--
Confidence            235678999999999988888888899999999999987655543  223333333  554 7889999999764320  


Q ss_pred             CCCCCCcccHHHHHHHHHHhCCC----ceEEeccCCCCCHH
Q 036449          131 DHPGAVPISTAQGEELRKLIGAP----AYIECSSKTQQNVK  167 (197)
Q Consensus       131 ~~~~~~~~~~~~~~~~~~~~~~~----~~~~~sa~~~~~i~  167 (197)
                          .......+...+.+..+..    +|+++||.+|+|+.
T Consensus       161 ----~~~~~~~~l~~~~~~~~~~~~~i~~IPiSA~~G~ni~  197 (222)
T d1zunb3         161 ----VFESIKADYLKFAEGIAFKPTTMAFVPMSALKGDNVV  197 (222)
T ss_dssp             ----HHHHHHHHHHHHHHTTTCCCSEEEEEECCTTTCTTTS
T ss_pred             ----ehhhhHHHHhhhhHhhccCCCceEEEEEEcccCccCC
Confidence                0111223445566665442    57999999999884

>d1puia_ c.37.1.8 (A:) Probable GTPase EngB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngB
species: Escherichia coli [TaxId: 562]

Probab=99.75  E-value=2.1e-18  Score=118.19  Aligned_cols=163  Identities=13%  Similarity=-0.007  Sum_probs=88.1

Q ss_pred             CCCceeEEEEEcCCCCCHHHHHHHHhhCCCCCCC--CCceeeeeeEEEEECCeEEEEEEEeCCCccccc----------c
Q 036449            2 SASRFIKCVTVGDGAVGKTCLLISYTSNTFPTDY--VPTVFDNFSANVVVNGSTVNLGLWDTAGQEDYN----------R   69 (197)
Q Consensus         2 ~~~~~~~i~v~G~~~~GKstli~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~----------~   69 (197)
                      +....++|+++|.+|||||||++++.+.......  .++............+ ...+..++.++.....          .
T Consensus        12 p~~~~~~I~lvG~~NvGKSSL~n~L~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~   90 (188)
T d1puia_          12 PSDTGIEVAFAGRSNAGKSSALNTLTNQKSLARTSKTPGRTQLINLFEVADG-KRLVDLPGYGYAEVPEEMKRKWQRALG   90 (188)
T ss_dssp             SCSCSEEEEEEECTTSSHHHHHTTTCCC-------------CCEEEEEEETT-EEEEECCCCC------CCHHHHHHHHH
T ss_pred             CCccCCEEEEECCCCCCHHHHHHHHhCCCceEeecccccceeeccceecccc-cceeeeecccccchhhhhhhhhhhhhh
Confidence            4567799999999999999999999886543221  2222222222222222 2222233332211111          1


Q ss_pred             ccccCcCCCcEEEEEEeCCCchhHHHHHHHHHHHHhhhCCCCCEEEEeeCCcccCCcccccCCCCCCcccHHHHHHHHHH
Q 036449           70 LRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPISTAQGEELRKL  149 (197)
Q Consensus        70 ~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~  149 (197)
                      ...........++.+.+..........  .+...+...  ..++++++||+|+......        ....+..++....
T Consensus        91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~--~~~~~~v~~k~D~~~~~~~--------~~~~~~~~~~l~~  158 (188)
T d1puia_          91 EYLEKRQSLQGLVVLMDIRHPLKDLDQ--QMIEWAVDS--NIAVLVLLTKADKLASGAR--------KAQLNMVREAVLA  158 (188)
T ss_dssp             HHHHHCTTEEEEEEEEETTSCCCHHHH--HHHHHHHHT--TCCEEEEEECGGGSCHHHH--------HHHHHHHHHHHGG
T ss_pred             hhhhhhhheeEEEEeecccccchhHHH--HHHHHhhhc--cccccchhhhhhccCHHHH--------HHHHHHHHHHHHh
Confidence            111122344566777777665544443  444555444  6889999999998664320        0111222222222


Q ss_pred             -hCCCceEEeccCCCCCHHHHHHHHHHHH
Q 036449          150 -IGAPAYIECSSKTQQNVKAVFDAAIRVV  177 (197)
Q Consensus       150 -~~~~~~~~~sa~~~~~i~~l~~~i~~~~  177 (197)
                       .+..+++.+||++|.|+++|++.|.+.+
T Consensus       159 ~~~~~~~i~vSA~~g~Gid~L~~~i~~~~  187 (188)
T d1puia_         159 FNGDVQVETFSSLKKQGVDKLRQKLDTWF  187 (188)
T ss_dssp             GCSCEEEEECBTTTTBSHHHHHHHHHHHH
T ss_pred             hCCCCcEEEEeCCCCCCHHHHHHHHHHHh
Confidence             2333789999999999999999987754

>d1nrjb_ c.37.1.8 (B:) Signal recognition particle receptor beta-subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Signal recognition particle receptor beta-subunit
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.73  E-value=5.1e-18  Score=118.36  Aligned_cols=115  Identities=14%  Similarity=0.103  Sum_probs=77.5

Q ss_pred             ceeEEEEEcCCCCCHHHHHHHHhhCCCCCCCCCceeeeeeEEEEECCeEEEEEEEeCCCccccccccccC----cCCCcE
Q 036449            5 RFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQEDYNRLRPLS----YRGADV   80 (197)
Q Consensus         5 ~~~~i~v~G~~~~GKstli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~----~~~~~~   80 (197)
                      ...+|+++|++|||||||+++|.+..+.+.   ++....  ...+......+.+||+||++.+...+..+    ...++.
T Consensus         2 ~~p~V~lvG~~n~GKTSLln~l~~~~~~~~---tt~~~~--~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~~~~   76 (209)
T d1nrjb_           2 YQPSIIIAGPQNSGKTSLLTLLTTDSVRPT---VVSQEP--LSAADYDGSGVTLVDFPGHVKLRYKLSDYLKTRAKFVKG   76 (209)
T ss_dssp             CCCEEEEECSTTSSHHHHHHHHHHSSCCCB---CCCSSC--EEETTGGGSSCEEEECCCCGGGTHHHHHHHHHHGGGEEE
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCCCCCe---EEecce--EEEEEeCCeEEEEEecccccchhhHHHHHHHHHhhhccc
Confidence            457899999999999999999998876432   111111  22223333567799999998766544333    445688


Q ss_pred             EEEEEeCCC-chhHHHHHHHH----HHHHhhhC-CCCCEEEEeeCCcccCC
Q 036449           81 FILAFSLIS-KASYENVSKKW----IPELKHYA-PGVPIILVGTKLDLRDD  125 (197)
Q Consensus        81 ~i~v~d~~~-~~s~~~~~~~~----~~~i~~~~-~~~~~ivv~nK~D~~~~  125 (197)
                      +++++|..+ ..+++.. ..|    ...+.... .+.|+++|+||+|+...
T Consensus        77 ~i~~vd~~~~~~~~~~~-~~~l~~~~~~~~~~~~~~~piiiv~NK~D~~~~  126 (209)
T d1nrjb_          77 LIFMVDSTVDPKKLTTT-AEFLVDILSITESSCENGIDILIACNKSELFTA  126 (209)
T ss_dssp             EEEEEETTSCTTCCHHH-HHHHHHHHHHHHHHSTTCCCEEEEEECTTSTTC
T ss_pred             cceEEEEecccccHHHH-HHHHHHHHHHHHHHHhccCCeEEEEEeeccccc
Confidence            899999764 4555554 333    33333333 58999999999999764

>d1r5ba3 c.37.1.8 (A:215-459) Eukaryotic peptide chain release factor ERF2, G domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Eukaryotic peptide chain release factor ERF2, G domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=99.72  E-value=1.5e-17  Score=118.37  Aligned_cols=161  Identities=17%  Similarity=0.109  Sum_probs=84.1

Q ss_pred             CCCceeEEEEEcCCCCCHHHHHHHHhhCC--CCC-------------CCC-----------------CceeeeeeEEEEE
Q 036449            2 SASRFIKCVTVGDGAVGKTCLLISYTSNT--FPT-------------DYV-----------------PTVFDNFSANVVV   49 (197)
Q Consensus         2 ~~~~~~~i~v~G~~~~GKstli~~~~~~~--~~~-------------~~~-----------------~~~~~~~~~~~~~   49 (197)
                      ..++.++|+++|+.++|||||+.+|+...  ...             ...                 ..........+..
T Consensus        20 ~~k~~iNi~iiGHVD~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~rg~ti~~~~~~~~~   99 (245)
T d1r5ba3          20 YGKEHVNIVFIGHVDAGKSTLGGNILFLTGMVDKRTMEKIEREAKEAGKESWYLSWALDSTSEEREKGKTVEVGRAYFET   99 (245)
T ss_dssp             SCCEEEEEEEEECGGGTHHHHHHHHHHHTTSSCHHHHHHHHHHTCC----------------------------CCEEEC
T ss_pred             cCCCceEEEEEeeCCCCHHHHHHHHHHHcCCccHHHHHHHHHHHHhcCCccchhhhhhhccccccccCcccccccccccc
Confidence            34567899999999999999999885311  100             000                 0000000111222


Q ss_pred             CCeEEEEEEEeCCCccccccccccCcCCCcEEEEEEeCCCchhHH------HHHHHHHHHHhhhCCCC-CEEEEeeCCcc
Q 036449           50 NGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYE------NVSKKWIPELKHYAPGV-PIILVGTKLDL  122 (197)
Q Consensus        50 ~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~------~~~~~~~~~i~~~~~~~-~~ivv~nK~D~  122 (197)
                      .+  ..+.+.|+||+..|..........+|++++|+|+.++.--.      .. ...+..+...  ++ +++++.||+|+
T Consensus       100 ~~--~~i~~iDtPGH~df~~~~~~g~~~aD~ailVVda~~G~~~~~~~~~~QT-~e~l~l~~~~--~i~~iiv~iNKmD~  174 (245)
T d1r5ba3         100 EH--RRFSLLDAPGHKGYVTNMINGASQADIGVLVISARRGEFEAGFERGGQT-REHAVLARTQ--GINHLVVVINKMDE  174 (245)
T ss_dssp             SS--EEEEECCCCC-----------TTSCSEEEEEEECSTTHHHHTTSTTCCH-HHHHHHHHHT--TCSSEEEEEECTTS
T ss_pred             cc--ceeeeecccccccchhhhhhhhhhhcceeeEEEcCCCccCCccccccch-HHHHHHHHHc--CCCeEEEEEEcCCC
Confidence            33  56789999999999998888899999999999998752110      11 1222222222  44 47899999999


Q ss_pred             cCCcccccCCCCCCcccHHHHHHHHHHh-CC-----CceEEeccCCCCCHHHHHH
Q 036449          123 RDDKQFFIDHPGAVPISTAQGEELRKLI-GA-----PAYIECSSKTQQNVKAVFD  171 (197)
Q Consensus       123 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-----~~~~~~sa~~~~~i~~l~~  171 (197)
                      ......    ...+....++...+.... +.     .+|+++||++|+||.++++
T Consensus       175 ~~~~~~----e~~~~ei~~~l~~~l~~i~~~~~~~~v~~VPiSA~~G~nI~~~~~  225 (245)
T d1r5ba3         175 PSVQWS----EERYKECVDKLSMFLRRVAGYNSKTDVKYMPVSAYTGQNVKDRVD  225 (245)
T ss_dssp             TTCSSC----HHHHHHHHHHHHHHHHHHHCCCHHHHEEEEECBTTTTBTTSSCCC
T ss_pred             Cccchh----HHHHHHHHHHHHHHHHHHhCcCcccCCEEEEeeccCCCCcccchh
Confidence            643210    000000112222222222 21     2689999999999976543

>d1f60a3 c.37.1.8 (A:2-240) Elongation factor eEF-1alpha, N-terminal (G) domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor eEF-1alpha, N-terminal (G) domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.70  E-value=1.1e-17  Score=118.54  Aligned_cols=153  Identities=14%  Similarity=0.067  Sum_probs=97.1

Q ss_pred             CceeEEEEEcCCCCCHHHHHHHHhh--CCCCC---------------C---------------CCCceeeeeeEEEEECC
Q 036449            4 SRFIKCVTVGDGAVGKTCLLISYTS--NTFPT---------------D---------------YVPTVFDNFSANVVVNG   51 (197)
Q Consensus         4 ~~~~~i~v~G~~~~GKstli~~~~~--~~~~~---------------~---------------~~~~~~~~~~~~~~~~~   51 (197)
                      +..++|+++|+.++|||||+.+++.  +....               .               ....+-..-...+.+.+
T Consensus         4 k~~iNi~iiGHvD~GKsTl~~~ll~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~Er~rGiTi~~~~~~~~~~~   83 (239)
T d1f60a3           4 KSHINVVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAELGKGSFKYAWVLDKLKAERERGITIDIALWKFETPK   83 (239)
T ss_dssp             CEEEEEEEEECTTSCHHHHHHHHHHHHSCSSHHHHHHHHHHGGGGSSSCCCHHHHHHHHHHHHHTTCCCSCSCEEEECSS
T ss_pred             CCccEEEEEeCCCCCHHHHHHHHHHHcCCccHHHHHHHHHHHHHhcCCccceeeecccchhhhcceeccccceeEeccCC
Confidence            4569999999999999999988863  11110               0               00000011122233344


Q ss_pred             eEEEEEEEeCCCccccccccccCcCCCcEEEEEEeCCCchh-------HHHHHHHHHHHHhhhCCCCC-EEEEeeCCccc
Q 036449           52 STVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKAS-------YENVSKKWIPELKHYAPGVP-IILVGTKLDLR  123 (197)
Q Consensus        52 ~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s-------~~~~~~~~~~~i~~~~~~~~-~ivv~nK~D~~  123 (197)
                        .++.+.|+|||..|.......+..+|++|+|+|+..+.-       .+..  ..+......  ++| +|++.||+|+.
T Consensus        84 --~~i~iiDtPGH~df~~~~~~g~~~~D~ailvvda~~G~~e~g~~~~~QT~--eh~~~~~~~--gv~~iiv~iNKmD~~  157 (239)
T d1f60a3          84 --YQVTVIDAPGHRDFIKNMITGTSQADCAILIIAGGVGEFEAGISKDGQTR--EHALLAFTL--GVRQLIVAVNKMDSV  157 (239)
T ss_dssp             --EEEEEEECCCCTTHHHHHHHSSSCCSEEEEEEECSHHHHHHHTCTTSHHH--HHHHHHHHT--TCCEEEEEEECGGGG
T ss_pred             --EEEEEEECCCcHHHHHHHHHHHHHhCEEEEEEECCCCccccccCchHhHH--HHHHHHHHc--CCCeEEEEEECCCCC
Confidence              678899999999999888889999999999999986521       1111  212222222  565 78899999997


Q ss_pred             CCcccccCCCCCCcccHHHHHHHHHHhCC----CceEEeccCCCCCHHH
Q 036449          124 DDKQFFIDHPGAVPISTAQGEELRKLIGA----PAYIECSSKTQQNVKA  168 (197)
Q Consensus       124 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~sa~~~~~i~~  168 (197)
                      +...      ........+...+....+.    .+++++|+.+|+|+.+
T Consensus       158 ~~d~------~~~~~~~~el~~~l~~~~~~~~~i~~ipiSa~~G~ni~~  200 (239)
T d1f60a3         158 KWDE------SRFQEIVKETSNFIKKVGYNPKTVPFVPISGWNGDNMIE  200 (239)
T ss_dssp             TTCH------HHHHHHHHHHHHHHHHHTCCGGGCCEEECCTTTCBTTTB
T ss_pred             CCCH------HHHHHHHHHHHHHHHhcCCCCCcEEEEEEEccCCCccee
Confidence            6432      0011122344555555554    3689999999988644

>d2dy1a2 c.37.1.8 (A:8-274) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus, EF-G-2 [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor G (EF-G), N-terminal (G) domain
species: Thermus thermophilus, EF-G-2 [TaxId: 274]

Probab=99.67  E-value=1.2e-15  Score=109.25  Aligned_cols=110  Identities=23%  Similarity=0.196  Sum_probs=78.8

Q ss_pred             EEEEEcCCCCCHHHHHHHHhhCCCCCCCC------Cc-------------eeeeeeEEEEECCeEEEEEEEeCCCccccc
Q 036449            8 KCVTVGDGAVGKTCLLISYTSNTFPTDYV------PT-------------VFDNFSANVVVNGSTVNLGLWDTAGQEDYN   68 (197)
Q Consensus         8 ~i~v~G~~~~GKstli~~~~~~~~~~~~~------~~-------------~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~   68 (197)
                      +|+++|+.|+|||||+.+++...-.....      .+             +-..-...+.+++  ..++++||||+.+|.
T Consensus         4 Nv~iiGh~~~GKTtL~e~ll~~~g~~~~~g~v~~g~~~~D~~~~E~~r~~ti~~~~~~~~~~~--~~~n~iDtPGh~dF~   81 (267)
T d2dy1a2           4 TVALVGHAGSGKTTLTEALLYKTGAKERRGRVEEGTTTTDYTPEAKLHRTTVRTGVAPLLFRG--HRVFLLDAPGYGDFV   81 (267)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHHTTSSSSCCCGGGTCCSSCCSHHHHHTTSCCSCEEEEEEETT--EEEEEEECCCSGGGH
T ss_pred             EEEEEcCCCCcHHHHHHHHHHHcCCchhhccchhccccccchHHHHHhCCeEEeecccccccc--cceeEEccCchhhhh
Confidence            59999999999999999986322111000      00             0011112344555  567799999999999


Q ss_pred             cccccCcCCCcEEEEEEeCCCchhHHHHHHHHHHHHhhhCCCCCEEEEeeCCccc
Q 036449           69 RLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLR  123 (197)
Q Consensus        69 ~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~~~ivv~nK~D~~  123 (197)
                      ......+..+|++|+|+|+.++-..+..  ..+......  +.|.++++||+|..
T Consensus        82 ~e~~~al~~~D~avlvvda~~Gv~~~t~--~~~~~~~~~--~~p~~i~iNk~D~~  132 (267)
T d2dy1a2          82 GEIRGALEAADAALVAVSAEAGVQVGTE--RAWTVAERL--GLPRMVVVTKLDKG  132 (267)
T ss_dssp             HHHHHHHHHCSEEEEEEETTTCSCHHHH--HHHHHHHHT--TCCEEEEEECGGGC
T ss_pred             hhhhhhhcccCceEEEeeccCCccchhH--HHHHhhhhc--cccccccccccccc
Confidence            8888888899999999999988776655  334445555  69999999999974

>d1jnya3 c.37.1.8 (A:4-227) Elongation factor eEF-1alpha, N-terminal (G) domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor eEF-1alpha, N-terminal (G) domain
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=99.67  E-value=5.7e-17  Score=114.14  Aligned_cols=157  Identities=13%  Similarity=0.092  Sum_probs=93.5

Q ss_pred             ceeEEEEEcCCCCCHHHHHHHHhhC--CCCC------------------------------CCCCceeeeeeEEEEECCe
Q 036449            5 RFIKCVTVGDGAVGKTCLLISYTSN--TFPT------------------------------DYVPTVFDNFSANVVVNGS   52 (197)
Q Consensus         5 ~~~~i~v~G~~~~GKstli~~~~~~--~~~~------------------------------~~~~~~~~~~~~~~~~~~~   52 (197)
                      +.++|+++|+.++|||||+.+|+..  ....                              .....+.......+  +..
T Consensus         2 p~iNi~viGHVd~GKTTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~rg~ti~~~~~~~--~~~   79 (224)
T d1jnya3           2 PHLNLIVIGHVDHGKSTLVGRLLMDRGFIDEKTVKEAEEAAKKLGKESEKFAFLLDRLKEERERGVTINLTFMRF--ETK   79 (224)
T ss_dssp             CEEEEEEEESTTSSHHHHHHHHHHHHBCCCHHHHHHHHHHHHHHTCTHHHHHHHHHHHHHC-----------CEE--ECS
T ss_pred             CccEEEEEecCCCCHHHHHHHHHHHcCCccHHHHHHHHHHHHhcCcccccccccccCchhhhcCCccccceEEEE--ecC
Confidence            5799999999999999999888631  1100                              00000000111112  223


Q ss_pred             EEEEEEEeCCCccccccccccCcCCCcEEEEEEeCCCchhHHH-----HHHHHHHHHhhhCCCCCEEEEeeCCcccCCcc
Q 036449           53 TVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYEN-----VSKKWIPELKHYAPGVPIILVGTKLDLRDDKQ  127 (197)
Q Consensus        53 ~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~-----~~~~~~~~i~~~~~~~~~ivv~nK~D~~~~~~  127 (197)
                      ...+.++|||||..|.......+.-+|++|+|+|+.++..-+.     ...+-+...... ...+++++.||+|+.....
T Consensus        80 ~~~i~iiDtPGH~df~~~~~~g~~~~D~allVVda~~G~~~~t~~~~~qt~e~l~~~~~~-~~~~iIv~iNK~D~~~~~~  158 (224)
T d1jnya3          80 KYFFTIIDAPGHRDFVKNMITGASQADAAILVVSAKKGEYEAGMSVEGQTREHIILAKTM-GLDQLIVAVNKMDLTEPPY  158 (224)
T ss_dssp             SCEEEECCCSSSTTHHHHHHHTSSCCSEEEEEEECSTTHHHHHHSTTCHHHHHHHHHHHT-TCTTCEEEEECGGGSSSTT
T ss_pred             CceeEEeeCCCcHHHHHHHHHHHHhhceEEEEEecccCcccccccccchhHHHHHHHHHh-CCCceEEEEEcccCCCccc
Confidence            3678899999999999988888999999999999998632111     001111222222 2346888999999975321


Q ss_pred             cccCCCCCCcccHHHHHHHHHHhCC----CceEEeccCCCCCHHH
Q 036449          128 FFIDHPGAVPISTAQGEELRKLIGA----PAYIECSSKTQQNVKA  168 (197)
Q Consensus       128 ~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~sa~~~~~i~~  168 (197)
                      .    ......-..+...+...++.    .+++++||..|.|+.+
T Consensus       159 ~----~~~~~~v~~~i~~~~~~~~~~~~~i~~IPISA~~G~NV~~  199 (224)
T d1jnya3         159 D----EKRYKEIVDQVSKFMRSYGFNTNKVRFVPVVAPSGDNITH  199 (224)
T ss_dssp             C----HHHHHHHHHHHHHHHHHTTCCCTTCEEEECBTTTTBTTTB
T ss_pred             c----HHHHHHHHHHHHhHHHhcCCCcccCeEEEEEccCCCCccc
Confidence            0    00001112334445555443    2578999999998854

>d2bv3a2 c.37.1.8 (A:7-282) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor G (EF-G), N-terminal (G) domain
species: Thermus thermophilus [TaxId: 274]

Probab=99.63  E-value=8.4e-16  Score=110.36  Aligned_cols=114  Identities=15%  Similarity=0.086  Sum_probs=81.3

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhhC--CCCC---CCC-Cce-------------eeeeeEEEEECCeEEEEEEEeCCCcccc
Q 036449            7 IKCVTVGDGAVGKTCLLISYTSN--TFPT---DYV-PTV-------------FDNFSANVVVNGSTVNLGLWDTAGQEDY   67 (197)
Q Consensus         7 ~~i~v~G~~~~GKstli~~~~~~--~~~~---~~~-~~~-------------~~~~~~~~~~~~~~~~~~i~D~~G~~~~   67 (197)
                      =+|+++|+.|+|||||+.+++..  ....   ... .+.             -......+.+++  ..++++||||+..|
T Consensus         7 Rni~i~gh~~~GKTtL~e~ll~~~g~~~~~g~v~~~~~~~D~~~~E~~r~~si~~~~~~~~~~~--~~~n~iDtPG~~dF   84 (276)
T d2bv3a2           7 RNIGIAAHIDAGKTTTTERILYYTGRIHKIGEVHEGAATMDFMEQERERGITITAAVTTCFWKD--HRINIIDAPGHVDF   84 (276)
T ss_dssp             EEEEEEECTTSCHHHHHHHHHHHHTSSCC-------------------CCCCCCCSEEEEEETT--EEEEEECCCSSSSC
T ss_pred             eEEEEEeCCCCCHHHHHHHHHHhcCccccccceecCceEEeccHHHHhcCCccccceeeeccCC--eEEEEecCCchhhh
Confidence            36999999999999999988632  1111   000 000             011122344555  56789999999999


Q ss_pred             ccccccCcCCCcEEEEEEeCCCchhHHHHHHHHHHHHhhhCCCCCEEEEeeCCcccCCc
Q 036449           68 NRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLRDDK  126 (197)
Q Consensus        68 ~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~~~ivv~nK~D~~~~~  126 (197)
                      .......+..+|++|+|+|..++-..+..  ........+  ++|.++++||+|....+
T Consensus        85 ~~e~~~~l~~~D~avlVvda~~Gv~~~T~--~~w~~a~~~--~lP~i~fINKmDr~~ad  139 (276)
T d2bv3a2          85 TIEVERSMRVLDGAIVVFDSSQGVEPQSE--TVWRQAEKY--KVPRIAFANKMDKTGAD  139 (276)
T ss_dssp             STTHHHHHHHCCEEEEEEETTTSSCHHHH--HHHHHHHTT--TCCEEEEEECTTSTTCC
T ss_pred             HHHHHHHHHhhhheEEeccccCCcchhHH--HHHHHHHHc--CCCEEEEEecccccccc
Confidence            98888888999999999999998766654  334445555  79999999999997643

>d1tq4a_ c.37.1.8 (A:) Interferon-inducible GTPase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Interferon-inducible GTPase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.59  E-value=4.9e-15  Score=112.43  Aligned_cols=164  Identities=14%  Similarity=0.134  Sum_probs=93.2

Q ss_pred             ceeEEEEEcCCCCCHHHHHHHHhhCCCCCCC------CCceeeeeeEEEEECCeEEEEEEEeCCCcccccc-----cccc
Q 036449            5 RFIKCVTVGDGAVGKTCLLISYTSNTFPTDY------VPTVFDNFSANVVVNGSTVNLGLWDTAGQEDYNR-----LRPL   73 (197)
Q Consensus         5 ~~~~i~v~G~~~~GKstli~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~-----~~~~   73 (197)
                      ..++|+++|.+|+|||||+|++.+.......      .+|+...  ..+...+ ...+.+|||||......     +...
T Consensus        55 ~~l~Iai~G~~n~GKSSLiNaL~G~~~~~~~~~~~g~~~tT~~~--~~~~~~~-~~~~~l~DtPG~~~~~~~~~~~~~~~  131 (400)
T d1tq4a_          55 SVLNVAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVVEVTMER--HPYKHPN-IPNVVFWDLPGIGSTNFPPDTYLEKM  131 (400)
T ss_dssp             CCEEEEEEECTTSSHHHHHHHHHTCCTTSTTSCCCCC----CCC--EEEECSS-CTTEEEEECCCGGGSSCCHHHHHHHT
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhCCCcCCCccCCCCCCCCceee--eeeeccC-CCeEEEEeCCCcccccccHHHHHHHh
Confidence            4699999999999999999999975432211      1122111  1112211 12366999999543221     1223


Q ss_pred             CcCCCcEEEEEEeCCCchhHHHHHHHHHHHHhhhCCCCCEEEEeeCCcccCCcccccCCCCCCcccHH----HH----HH
Q 036449           74 SYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPISTA----QG----EE  145 (197)
Q Consensus        74 ~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~----~~----~~  145 (197)
                      .+..+|++|++.|..-  +-.+  ..+...+...  +.|+++|.||+|........   ........+    ..    ..
T Consensus       132 ~~~~~d~~l~~~~~~~--~~~d--~~l~~~l~~~--~k~~~~V~nK~D~~~~~~~~---~~~~~~~~e~~l~~ir~~~~~  202 (400)
T d1tq4a_         132 KFYEYDFFIIISATRF--KKND--IDIAKAISMM--KKEFYFVRTKVDSDITNEAD---GEPQTFDKEKVLQDIRLNCVN  202 (400)
T ss_dssp             TGGGCSEEEEEESSCC--CHHH--HHHHHHHHHT--TCEEEEEECCHHHHHHHHHT---TCCTTCCHHHHHHHHHHHHHH
T ss_pred             hhhcceEEEEecCCCC--CHHH--HHHHHHHHHc--CCCEEEEEeCcccccchhhh---cccccccHHHHHHHHHHHHHH
Confidence            3556788888877432  2222  3556666666  78999999999974221100   000111111    11    11


Q ss_pred             HHHHhC--CCceEEeccCC--CCCHHHHHHHHHHHHcCC
Q 036449          146 LRKLIG--APAYIECSSKT--QQNVKAVFDAAIRVVLQP  180 (197)
Q Consensus       146 ~~~~~~--~~~~~~~sa~~--~~~i~~l~~~i~~~~~~~  180 (197)
                      .....+  .++++.+|+.+  ..++.++.+.+.+.+...
T Consensus       203 ~l~~~~~~~~~vflvS~~~~~~~d~~~L~~~l~~~L~~~  241 (400)
T d1tq4a_         203 TFRENGIAEPPIFLLSNKNVCHYDFPVLMDKLISDLPIY  241 (400)
T ss_dssp             HHHHTTCSSCCEEECCTTCTTSTTHHHHHHHHHHHSCGG
T ss_pred             HHHHcCCCCCCEEEecCCcccccCHHHHHHHHHHHhHHH
Confidence            122222  33577888765  458999999988876553

>d1n0ua2 c.37.1.8 (A:3-343) Elongation factor 2 (eEF-2), N-terminal (G) domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor 2 (eEF-2), N-terminal (G) domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.58  E-value=2.4e-15  Score=111.16  Aligned_cols=120  Identities=15%  Similarity=0.154  Sum_probs=82.3

Q ss_pred             CCCCceeE-EEEEcCCCCCHHHHHHHHhh--CCCCCC------CCCceee------e---eeEEEEE-------------
Q 036449            1 MSASRFIK-CVTVGDGAVGKTCLLISYTS--NTFPTD------YVPTVFD------N---FSANVVV-------------   49 (197)
Q Consensus         1 m~~~~~~~-i~v~G~~~~GKstli~~~~~--~~~~~~------~~~~~~~------~---~~~~~~~-------------   49 (197)
                      |+....+| |+++|+.++|||||+.+++.  +.....      +.-+..+      .   ....+..             
T Consensus        11 m~~~~~IRNI~iiGhvd~GKTTL~d~Ll~~~g~i~~~~~~~~~~~D~~~~E~eRgiTi~~~~~~l~~~~~~~~~~~~~~~   90 (341)
T d1n0ua2          11 MDKVTNVRNMSVIAHVDHGKSTLTDSLVQRAGIISAAKAGEARFTDTRKDEQERGITIKSTAISLYSEMSDEDVKEIKQK   90 (341)
T ss_dssp             HHCGGGEEEEEEECCGGGTHHHHHHHHHHHHBCCBC------------------CCCBCCCEEEEEEECCHHHHHHCSSC
T ss_pred             hcCcccCcEEEEEeCCCCcHHHHHHHHHHHCCCccccccccccccccchhHHhcCceEeCCEEEEEeccCcccccchhcc
Confidence            44556675 99999999999999999873  111110      0000000      0   0011111             


Q ss_pred             -CCeEEEEEEEeCCCccccccccccCcCCCcEEEEEEeCCCchhHHHHHHHHHHHHhhhCCCCCEEEEeeCCcccC
Q 036449           50 -NGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLRD  124 (197)
Q Consensus        50 -~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~~~ivv~nK~D~~~  124 (197)
                       ++..+.++++||||+..|.......+.-+|++++|+|+..+-..+.. ..|.. ....  +.|+++++||+|...
T Consensus        91 ~~~~~~~inliDtPGh~dF~~ev~~al~~~D~allVVda~eGv~~qT~-~~~~~-a~~~--~~p~i~viNKiDr~~  162 (341)
T d1n0ua2          91 TDGNSFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDTIEGVCVQTE-TVLRQ-ALGE--RIKPVVVINKVDRAL  162 (341)
T ss_dssp             CCSSEEEEEEECCCCCCSSCHHHHHHHHTCSEEEEEEETTTBSCHHHH-HHHHH-HHHT--TCEEEEEEECHHHHH
T ss_pred             ccccceEEEEEcCCCcHHHHHHHHHHHhhcCceEEEEecccCcchhHH-HHHHH-HHHc--CCCeEEEEECccccc
Confidence             23567899999999999998888888899999999999998777665 33333 3334  699999999999853

>d1h65a_ c.37.1.8 (A:) Chloroplast protein translocon GTPase Toc34 {Garden pea (Pisum sativum) [TaxId: 3888]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Chloroplast protein translocon GTPase Toc34
species: Garden pea (Pisum sativum) [TaxId: 3888]

Probab=99.55  E-value=8.7e-14  Score=99.56  Aligned_cols=119  Identities=15%  Similarity=0.107  Sum_probs=75.5

Q ss_pred             CceeEEEEEcCCCCCHHHHHHHHhhCCCC--CCCCCceeeeeeEEEEECCeEEEEEEEeCCCcccccc-------ccc--
Q 036449            4 SRFIKCVTVGDGAVGKTCLLISYTSNTFP--TDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQEDYNR-------LRP--   72 (197)
Q Consensus         4 ~~~~~i~v~G~~~~GKstli~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~-------~~~--   72 (197)
                      ...++|+++|.+|+|||||+|.+++....  ....+++..........++  ..+.++||||......       ...  
T Consensus        30 ~~~l~I~LvG~tg~GKSSliN~ilg~~~~~vs~~~~~T~~~~~~~~~~~g--~~i~viDTPGl~~~~~~~~~~~~~i~~~  107 (257)
T d1h65a_          30 VNSLTILVMGKGGVGKSSTVNSIIGERVVSISPFQSEGPRPVMVSRSRAG--FTLNIIDTPGLIEGGYINDMALNIIKSF  107 (257)
T ss_dssp             CCEEEEEEEESTTSSHHHHHHHHHTSCCSCCCSSSCCCSSCEEEEEEETT--EEEEEEECCCSEETTEECHHHHHHHHHH
T ss_pred             CCCcEEEEECCCCCcHHHHHHHHhCCCceeecCCCCcceeEEEEEEEecc--EEEEEEeeecccCCcchHHHHHHHHHHH
Confidence            45699999999999999999999986543  2334444444455556666  4577999999532211       001  


Q ss_pred             cCcCCCcEEEEEEeCCCch-hHHHHHHHHHHHHhhhC-C--CCCEEEEeeCCcccCCc
Q 036449           73 LSYRGADVFILAFSLISKA-SYENVSKKWIPELKHYA-P--GVPIILVGTKLDLRDDK  126 (197)
Q Consensus        73 ~~~~~~~~~i~v~d~~~~~-s~~~~~~~~~~~i~~~~-~--~~~~ivv~nK~D~~~~~  126 (197)
                      ......|+++||++++... +..+  ...+..+...+ +  -.++++|+||.|....+
T Consensus       108 ~~~~~~~~il~v~~~~~~r~~~~~--~~~l~~l~~~fg~~~~~~~ivv~t~~D~~~~~  163 (257)
T d1h65a_         108 LLDKTIDVLLYVDRLDAYRVDNLD--KLVAKAITDSFGKGIWNKAIVALTHAQFSPPD  163 (257)
T ss_dssp             TTTCEECEEEEEEESSCCCCCHHH--HHHHHHHHHHHCGGGGGGEEEEEECCSCCCGG
T ss_pred             HhcCCCCeEEEEEECCCCCCCHHH--HHHHHHHHHHcchhhhhCEEEEEECcccCCcC
Confidence            1223567889998886542 2222  23333333332 1  24789999999987644

>d1yrba1 c.37.1.10 (A:1-244) ATP(GTP)-binding protein PAB0955 {Pyrococcus abyssi [TaxId: 29292]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: ATP(GTP)-binding protein PAB0955
species: Pyrococcus abyssi [TaxId: 29292]

Probab=99.48  E-value=1.2e-13  Score=98.01  Aligned_cols=120  Identities=13%  Similarity=0.007  Sum_probs=67.1

Q ss_pred             EEEEEeCCCccccccccccC-----cCCCcEEEEEEeCCCchhHHHHHHHHHH---HHhhhCCCCCEEEEeeCCcccCCc
Q 036449           55 NLGLWDTAGQEDYNRLRPLS-----YRGADVFILAFSLISKASYENVSKKWIP---ELKHYAPGVPIILVGTKLDLRDDK  126 (197)
Q Consensus        55 ~~~i~D~~G~~~~~~~~~~~-----~~~~~~~i~v~d~~~~~s~~~~~~~~~~---~i~~~~~~~~~ivv~nK~D~~~~~  126 (197)
                      .+.+.|+||+..+.......     ....+.+++++|..............+.   .....  ..|.++|.||+|+....
T Consensus        96 ~~~~id~~g~~~~~~~~~~~~~~~~~~~~~~~v~vvd~~~~~~~~~~~~~~l~~~~~~~~~--~~~~ivvinK~D~~~~~  173 (244)
T d1yrba1          96 DYVLIDTPGQMETFLFHEFGVRLMENLPYPLVVYISDPEILKKPNDYCFVRFFALLIDLRL--GATTIPALNKVDLLSEE  173 (244)
T ss_dssp             SEEEEECCSSHHHHHHSHHHHHHHHTSSSCEEEEEECGGGCCSHHHHHHHHHHHHHHHHHH--TSCEEEEECCGGGCCHH
T ss_pred             ceeeeccccchhHHHHHHHHHHHHhhccCceEEEEeccccccCchhHhhHHHHHHHHHHHh--CCCceeeeeccccccHH
Confidence            46799999987653222111     2245688999998643332222111111   11122  68999999999997643


Q ss_pred             cccc----------------CCCC-CCcccHHHHHHHHHHhCCCceEEeccCCCCCHHHHHHHHHHH
Q 036449          127 QFFI----------------DHPG-AVPISTAQGEELRKLIGAPAYIECSSKTQQNVKAVFDAAIRV  176 (197)
Q Consensus       127 ~~~~----------------~~~~-~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~l~~~i~~~  176 (197)
                      ....                .... ...............++..+++++||++|+|+++++..|.+.
T Consensus       174 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~vSa~~geGi~~L~~~l~e~  240 (244)
T d1yrba1         174 EKERHRKYFEDIDYLTARLKLDPSMQGLMAYKMCSMMTEVLPPVRVLYLSAKTREGFEDLETLAYEH  240 (244)
T ss_dssp             HHHHHHHHHHCHHHHHHHHHHCCSHHHHHHHHHHHHHHHHSCCCCCEECCTTTCTTHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhhCCCCcEEEEECCCCCCHHHHHHHHHHH
Confidence            2100                0000 000001111112223455589999999999999999998775

>d2qm8a1 c.37.1.10 (A:5-327) Metallochaperone MeaB {Methylobacterium extorquens [TaxId: 408]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Metallochaperone MeaB
species: Methylobacterium extorquens [TaxId: 408]

Probab=99.26  E-value=9e-12  Score=91.43  Aligned_cols=105  Identities=13%  Similarity=0.145  Sum_probs=61.1

Q ss_pred             EEEEEEeCCCccccccccccCcCCCcEEEEEEeCCCchhHHHHHHHHHHHHhhhCCCCCEEEEeeCCcccCCcccccCCC
Q 036449           54 VNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLRDDKQFFIDHP  133 (197)
Q Consensus        54 ~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~~~ivv~nK~D~~~~~~~~~~~~  133 (197)
                      +.+.|+.|.|.-.-..   ....-+|.+++|.....++..+....-.++        ++=++|+||+|+.....      
T Consensus       144 ~d~iiiETVG~gq~e~---~~~~~~D~~v~v~~p~~GD~iQ~~k~gilE--------~aDi~vvNKaD~~~~~~------  206 (323)
T d2qm8a1         144 FDVILVETVGVGQSET---AVADLTDFFLVLMLPGAGDELQGIKKGIFE--------LADMIAVNKADDGDGER------  206 (323)
T ss_dssp             CCEEEEEECSSSSCHH---HHHTTSSEEEEEECSCC------CCTTHHH--------HCSEEEEECCSTTCCHH------
T ss_pred             CCeEEEeehhhhhhhh---hhhcccceEEEEeeccchhhhhhhhhhHhh--------hhheeeEeccccccchH------
Confidence            3455777777422111   123448999999999887655543111111        24488999999865432      


Q ss_pred             CCCcccHHHHHHHHHHh---------CCCceEEeccCCCCCHHHHHHHHHHHHcC
Q 036449          134 GAVPISTAQGEELRKLI---------GAPAYIECSSKTQQNVKAVFDAAIRVVLQ  179 (197)
Q Consensus       134 ~~~~~~~~~~~~~~~~~---------~~~~~~~~sa~~~~~i~~l~~~i~~~~~~  179 (197)
                          ........+....         ..++++.+||+++.|+++++++|.+....
T Consensus       207 ----~~~~~~~~~~~~l~~~~~~~~~~~p~V~~~Sa~~g~Gi~el~~~I~~~~~~  257 (323)
T d2qm8a1         207 ----RASAAASEYRAALHILTPPSATWTPPVVTISGLHGKGLDSLWSRIEDHRSK  257 (323)
T ss_dssp             ----HHHHHHHHHHHHHTTBCCSBTTBCCCEEEEBTTTTBSHHHHHHHHHHHHHH
T ss_pred             ----HHHHHHHHHHHHhhcccccccCCCCceEEEEecCCCCHHHHHHHHHHHHHH
Confidence                2222222222221         12379999999999999999999876543

>d2p67a1 c.37.1.10 (A:1-327) LAO/AO transport system kinase ArgK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: LAO/AO transport system kinase ArgK
species: Escherichia coli [TaxId: 562]

Probab=99.24  E-value=5.4e-12  Score=92.73  Aligned_cols=89  Identities=17%  Similarity=0.190  Sum_probs=49.9

Q ss_pred             CcCCCcEEEEEEeCCCchhHHHHHHHHHHHHhhhCCCCCEEEEeeCCcccCCcccccCCCCCCcccHHHHHHHHHHhC--
Q 036449           74 SYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPISTAQGEELRKLIG--  151 (197)
Q Consensus        74 ~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--  151 (197)
                      +...+|.+++|.+....+..+..    ...+...    +=++|+||+|+......        .....+.......+.  
T Consensus       164 i~~~aD~~l~v~~P~~Gd~iq~~----k~gi~e~----aDi~VvNKaD~~~~~~~--------~~~~~~~~~al~~~~~~  227 (327)
T d2p67a1         164 VARMVDCFISLQIAGGGDDLQGI----KKGLMEV----ADLIVINKDDGDNHTNV--------AIARHMYESALHILRRK  227 (327)
T ss_dssp             HHTTCSEEEEEECC------CCC----CHHHHHH----CSEEEECCCCTTCHHHH--------HHHHHHHHHHHHHSCCS
T ss_pred             hhhccceEEEEecCCCchhhhhh----chhhhcc----ccEEEEEeecccchHHH--------HHHHHHHHHHhhhcccC
Confidence            34568999999887665544433    1222222    33788899998653210        001111122111111  


Q ss_pred             ----CCceEEeccCCCCCHHHHHHHHHHHHc
Q 036449          152 ----APAYIECSSKTQQNVKAVFDAAIRVVL  178 (197)
Q Consensus       152 ----~~~~~~~sa~~~~~i~~l~~~i~~~~~  178 (197)
                          .++++.|||.+|+|++++++.|.+...
T Consensus       228 ~~~w~p~V~~~SA~~g~Gi~eL~~~I~~~~~  258 (327)
T d2p67a1         228 YDEWQPRVLTCSALEKRGIDEIWHAIIDFKT  258 (327)
T ss_dssp             BTTBCCEEEECBGGGTBSHHHHHHHHHHHHH
T ss_pred             CCCCcceeEEEEeeCCCCHHHHHHHHHHHHH
Confidence                136899999999999999999987544

>d2akab1 c.37.1.8 (B:6-304) Dynamin G domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Dynamin G domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.08  E-value=4.1e-10  Score=81.91  Aligned_cols=117  Identities=22%  Similarity=0.248  Sum_probs=71.3

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHhhCCC-CCCCCCceeeeeeEEEE--------E---CC----------------------
Q 036449            6 FIKCVTVGDGAVGKTCLLISYTSNTF-PTDYVPTVFDNFSANVV--------V---NG----------------------   51 (197)
Q Consensus         6 ~~~i~v~G~~~~GKstli~~~~~~~~-~~~~~~~~~~~~~~~~~--------~---~~----------------------   51 (197)
                      ..+|+|+|..++|||||+|++++..+ +....+++.......+.        +   .+                      
T Consensus        26 ~P~ivvvG~~SsGKSsliNaLlg~~~lP~~~~~~T~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  105 (299)
T d2akab1          26 LPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNSTTEYAEFLHCKGKKFTDFEEVRLEIEAETDRVTG  105 (299)
T ss_dssp             CCEEEEEEBTTSCHHHHHHHHHTSCCSCCCSSCSCSSCEEEEEEECSSCEEEETTSTTCCBCCHHHHHHHHHHHHHHHCS
T ss_pred             CCeEEEEcCCCCCHHHHHHHHhCCCcCCCCCCccccCCEEEEEeccccceeEEEeCCCCeeCCHHHHHHHHHHHHHHhhC
Confidence            35899999999999999999998875 44333433111000000        0   00                      


Q ss_pred             -----------------eEEEEEEEeCCCccccc-------------cccccCcCCCc-EEEEEEeCCCchhHHHHHHHH
Q 036449           52 -----------------STVNLGLWDTAGQEDYN-------------RLRPLSYRGAD-VFILAFSLISKASYENVSKKW  100 (197)
Q Consensus        52 -----------------~~~~~~i~D~~G~~~~~-------------~~~~~~~~~~~-~~i~v~d~~~~~s~~~~~~~~  100 (197)
                                       ....+.++|+||.....             .+...|+...+ ++++|.+.+...+.... ..+
T Consensus       106 ~~~~~~~~~i~l~~~~p~~~~l~liD~PG~~~~~~~~~~~~~~~~i~~~~~~y~~~~~~~il~v~~a~~~~~~~~~-~~~  184 (299)
T d2akab1         106 TNKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDA-LKI  184 (299)
T ss_dssp             STTCCCSCCEEEEEEETTCCSEEEEECCCBCSSCCSSSCTTHHHHHHHHHHHHHTSTTEEEEEEEESSSCGGGCHH-HHH
T ss_pred             CCcCcCCccEEEEEcCCCCCCeeEEccCCccccccCCcchhHHHHHHHHHHHHhcCccceeeeecccccchhhhHH-HHH
Confidence                             01126799999953221             22333455555 56667777666555554 455


Q ss_pred             HHHHhhhCCCCCEEEEeeCCcccCC
Q 036449          101 IPELKHYAPGVPIILVGTKLDLRDD  125 (197)
Q Consensus       101 ~~~i~~~~~~~~~ivv~nK~D~~~~  125 (197)
                      ...+...  ..++++|.||+|...+
T Consensus       185 ~~~~~~~--~~r~i~Vltk~D~~~~  207 (299)
T d2akab1         185 AKEVDPQ--GQRTIGVITKLDLMDE  207 (299)
T ss_dssp             HHHHCTT--CSSEEEEEECGGGSCT
T ss_pred             HHHhCcC--CCceeeEEeccccccc
Confidence            5555444  5689999999999764

>d1jala1 c.37.1.8 (A:1-278) YchF GTP-binding protein N-terminal domain {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: YchF GTP-binding protein N-terminal domain
species: Haemophilus influenzae [TaxId: 727]

Probab=99.00  E-value=4.7e-09  Score=75.45  Aligned_cols=82  Identities=21%  Similarity=0.227  Sum_probs=51.2

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhhCCCC-CCCCCceeeeeeEEEEECC-------------eE--EEEEEEeCCCccc--c-
Q 036449            7 IKCVTVGDGAVGKTCLLISYTSNTFP-TDYVPTVFDNFSANVVVNG-------------ST--VNLGLWDTAGQED--Y-   67 (197)
Q Consensus         7 ~~i~v~G~~~~GKstli~~~~~~~~~-~~~~~~~~~~~~~~~~~~~-------------~~--~~~~i~D~~G~~~--~-   67 (197)
                      ++|.+||.|+||||||+++++..... .+|+.|+-.-....+.+..             +.  ..++++|+||.-.  + 
T Consensus         3 ~~~GivG~Pn~GKSTlf~~lt~~~~~~~~ypf~ti~pn~gvv~v~d~r~~~l~~~~~~~~~~~a~i~~~Di~GLi~ga~~   82 (278)
T d1jala1           3 FKCGIVGLPNVGKSTLFNALTKAGIEAANYPFCTIEPNTGVVPMPDPRLDALAEIVKPERILPTTMEFVDIAGLVAGASK   82 (278)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHTC------CCCCCCCCSSEEECCCHHHHHHHHHHCCSEEECCEEEEEECCSCCTTHHH
T ss_pred             ceEEEECCCCCCHHHHHHHHHCCCCccccCCCCCCCCceEEEecccHhHHHHHHhcCCCceeeeeEEEEEccccCCCccc
Confidence            79999999999999999999976543 4555555322222232221             11  2478999999421  1 


Q ss_pred             -ccccc---cCcCCCcEEEEEEeCC
Q 036449           68 -NRLRP---LSYRGADVFILAFSLI   88 (197)
Q Consensus        68 -~~~~~---~~~~~~~~~i~v~d~~   88 (197)
                       ..+..   ..++.+|+++.|+|..
T Consensus        83 g~Glg~~FL~~ir~~d~LihVVr~f  107 (278)
T d1jala1          83 GEGLGNKFLANIRETDAIGHVVRCF  107 (278)
T ss_dssp             HGGGTCCHHHHHHTCSEEEEEEECS
T ss_pred             CCCccHHHHHHHHhccceEEEeecc
Confidence             12222   2466899999999863

>d1jwyb_ c.37.1.8 (B:) Dynamin G domain {Dictyostelium discoideum [TaxId: 44689]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Dynamin G domain
species: Dictyostelium discoideum [TaxId: 44689]

Probab=98.94  E-value=5.7e-10  Score=81.45  Aligned_cols=25  Identities=28%  Similarity=0.444  Sum_probs=23.2

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhhCCC
Q 036449            7 IKCVTVGDGAVGKTCLLISYTSNTF   31 (197)
Q Consensus         7 ~~i~v~G~~~~GKstli~~~~~~~~   31 (197)
                      .+|+|+|..++|||||+|++++..+
T Consensus        25 P~ivVvG~~ssGKSSliNaLlG~~~   49 (306)
T d1jwyb_          25 PQIVVVGSQSSGKSSVLENIVGRDF   49 (306)
T ss_dssp             CEEEEEECSSSSHHHHHHHHHTSCC
T ss_pred             CeEEEEeCCCCCHHHHHHHHhCCCC
Confidence            5899999999999999999998775

>d1wxqa1 c.37.1.8 (A:1-319) GTP-binding protein PH0525 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein PH0525
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=98.93  E-value=2.4e-09  Score=78.46  Aligned_cols=83  Identities=18%  Similarity=0.152  Sum_probs=45.4

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhhCCC-CCCCCCceee-eeeEEEE---------------------ECCeEEEEEEEeCCC
Q 036449            7 IKCVTVGDGAVGKTCLLISYTSNTF-PTDYVPTVFD-NFSANVV---------------------VNGSTVNLGLWDTAG   63 (197)
Q Consensus         7 ~~i~v~G~~~~GKstli~~~~~~~~-~~~~~~~~~~-~~~~~~~---------------------~~~~~~~~~i~D~~G   63 (197)
                      ++|.++|.|+||||||+|++.+... ..+|+.|+-+ .......                     .......++++|+||
T Consensus         1 ~~v~lvG~pn~GKStlfn~lt~~~~~v~nypftT~~pn~Gv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~D~pG   80 (319)
T d1wxqa1           1 MEIGVVGKPNVGKSTFFSAATLVDVEIANYPFTTIEANVGVTYAITDHPCKELGCSPNPQNYEYRNGLALIPVKMVDVAG   80 (319)
T ss_dssp             CEEEEEECTTSSHHHHHHHHHC--------------CCEEEEEEEEECSCSSSCCSCCCSSSCEETTEEEEEEEEEECC-
T ss_pred             CcEeEECCCCCCHHHHHHHHHCCCCchhcCCCCcccCccceeeCCCCchhhhhhhccCccccccccccccccEEEEECCC
Confidence            5899999999999999999997544 3455545421 1111110                     011336788999999


Q ss_pred             ccc-------cccccccCcCCCcEEEEEEeCCC
Q 036449           64 QED-------YNRLRPLSYRGADVFILAFSLIS   89 (197)
Q Consensus        64 ~~~-------~~~~~~~~~~~~~~~i~v~d~~~   89 (197)
                      .-.       ........++.+|+++.|+|..+
T Consensus        81 li~ga~~g~~~~~~~l~~i~~~d~ii~VVd~~~  113 (319)
T d1wxqa1          81 LVPGAHEGRGLGNKFLDDLRMASALIHVVDATG  113 (319)
T ss_dssp             --------------CCCSSTTCSEEEEEEETTC
T ss_pred             cccchhcccchHHHHHHhhccceEEEEEecccc
Confidence            422       12222334678999999999863

>d1ni3a1 c.37.1.8 (A:11-306) YchF GTP-binding protein N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: YchF GTP-binding protein N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=98.88  E-value=2.1e-09  Score=78.02  Aligned_cols=86  Identities=22%  Similarity=0.224  Sum_probs=58.6

Q ss_pred             CceeEEEEEcCCCCCHHHHHHHHhhCC--CCCCCCCceeeeeeEEEEECC---------------eEEEEEEEeCCCccc
Q 036449            4 SRFIKCVTVGDGAVGKTCLLISYTSNT--FPTDYVPTVFDNFSANVVVNG---------------STVNLGLWDTAGQED   66 (197)
Q Consensus         4 ~~~~~i~v~G~~~~GKstli~~~~~~~--~~~~~~~~~~~~~~~~~~~~~---------------~~~~~~i~D~~G~~~   66 (197)
                      +..++|.++|.|+||||||+++++...  -..+|+.|+-+.....+.+..               ....+++.|.||.-.
T Consensus         8 ~~~~kiGivG~Pn~GKSTlfnalT~~~~~~~anypftTi~pn~g~v~v~d~r~~~l~~~~~~~~~~~~~i~~~DvaGLv~   87 (296)
T d1ni3a1           8 GNNLKTGIVGMPNVGKSTFFRAITKSVLGNPANYPYATIDPEEAKVAVPDERFDWLCEAYKPKSRVPAFLTVFDIAGLTK   87 (296)
T ss_dssp             SSCCEEEEEECSSSSHHHHHHHHHHSTTTSTTCCSSCCCCTTEEEEEECCHHHHHHHHHHCCSEEECEEEEEECTGGGCC
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHHCCCCCCcCCCCccCccCCeEEEeccccchhhhhhcccCCceecccceeeecccccc
Confidence            356999999999999999999999754  356777776333222333322               124678999998432


Q ss_pred             c-------ccccccCcCCCcEEEEEEeCCC
Q 036449           67 Y-------NRLRPLSYRGADVFILAFSLIS   89 (197)
Q Consensus        67 ~-------~~~~~~~~~~~~~~i~v~d~~~   89 (197)
                      -       .......++.+|+++.|+|..+
T Consensus        88 gA~~g~GLGn~fL~~ir~~d~lihVV~~f~  117 (296)
T d1ni3a1          88 GASTGVGLGNAFLSHVRAVDAIYQVVRAFD  117 (296)
T ss_dssp             CCCSSSSSCHHHHHHHTTCSEEEEEEECCC
T ss_pred             ccccccccHHHHHHHhhccceeEEEEeccC
Confidence            1       1122234678999999999865

>d1puja_ c.37.1.8 (A:) Probable GTPase YlqF {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase YlqF
species: Bacillus subtilis [TaxId: 1423]

Probab=98.57  E-value=3.6e-08  Score=70.51  Aligned_cols=56  Identities=27%  Similarity=0.320  Sum_probs=35.1

Q ss_pred             CceeEEEEEcCCCCCHHHHHHHHhhCCCC--CCCCCceeeeeeEEEEECCeEEEEEEEeCCCc
Q 036449            4 SRFIKCVTVGDGAVGKTCLLISYTSNTFP--TDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQ   64 (197)
Q Consensus         4 ~~~~~i~v~G~~~~GKstli~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~   64 (197)
                      .+.++|+|+|.|+||||||+|++.+....  ...+.++...  ..+..+.   .+.++||||.
T Consensus       110 ~~~~~v~vvG~PNvGKSsliN~L~~~~~~~~~~~pG~Tr~~--~~i~~~~---~~~l~DTPGi  167 (273)
T d1puja_         110 PRAIRALIIGIPNVGKSTLINRLAKKNIAKTGDRPGITTSQ--QWVKVGK---ELELLDTPGI  167 (273)
T ss_dssp             CCCEEEEEEESTTSSHHHHHHHHHTSCCC--------------CCEEETT---TEEEEECCCC
T ss_pred             CCceEEEEEecCccchhhhhhhhhccceEEECCcccccccc--eEEECCC---CeEEecCCCc
Confidence            45799999999999999999999986542  2222222211  1222222   2669999996

>d1u0la2 c.37.1.8 (A:69-293) Probable GTPase EngC (YjeQ), C-terminal domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngC (YjeQ), C-terminal domain
species: Thermotoga maritima [TaxId: 2336]

Probab=98.54  E-value=4.1e-08  Score=67.59  Aligned_cols=58  Identities=17%  Similarity=0.071  Sum_probs=34.2

Q ss_pred             EEEEEcCCCCCHHHHHHHHhhCCCCCC-CCCc------eeeeeeEEEEECCeEEEEEEEeCCCccccc
Q 036449            8 KCVTVGDGAVGKTCLLISYTSNTFPTD-YVPT------VFDNFSANVVVNGSTVNLGLWDTAGQEDYN   68 (197)
Q Consensus         8 ~i~v~G~~~~GKstli~~~~~~~~~~~-~~~~------~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~   68 (197)
                      ..+++|++|||||||+|++........ ....      ........+.+++..   .++||||...+.
T Consensus        97 t~~~~G~SGVGKSTLiN~L~~~~~~~T~~vs~~~~rGrHTTt~~~l~~l~~gg---~iiDTPG~r~~~  161 (225)
T d1u0la2          97 ISTMAGLSGVGKSSLLNAINPGLKLRVSEVSEKLQRGRHTTTTAQLLKFDFGG---YVVDTPGFANLE  161 (225)
T ss_dssp             EEEEECSTTSSHHHHHHHHSTTCCCC-------------CCCSCCEEECTTSC---EEESSCSSTTCC
T ss_pred             eEEEECCCCCCHHHHHHhhcchhhhhccCcccccCCCCccccceeEEEECCCc---EEEeCCcccccc
Confidence            478999999999999999986533211 1110      011222233344332   389999976543

>d1u0la2 c.37.1.8 (A:69-293) Probable GTPase EngC (YjeQ), C-terminal domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngC (YjeQ), C-terminal domain
species: Thermotoga maritima [TaxId: 2336]

Probab=98.49  E-value=3.2e-07  Score=63.10  Aligned_cols=87  Identities=16%  Similarity=0.213  Sum_probs=61.4

Q ss_pred             CcCCCcEEEEEEeCCCchhHHHHHHHHHHHHhhhCCCCCEEEEeeCCcccCCcccccCCCCCCcccHHHHHHHHHHhC-C
Q 036449           74 SYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPISTAQGEELRKLIG-A  152 (197)
Q Consensus        74 ~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~  152 (197)
                      ...+.|.+++|+.+.+|..-....++|+......  +++.+||+||+|+.+...            .+....+...+. .
T Consensus         7 ~vANiD~vliV~s~~~P~~~~~~ldR~Lv~a~~~--~i~pvIvlnK~DL~~~~~------------~~~~~~~~~~~~~~   72 (225)
T d1u0la2           7 HVANVDQVILVVTVKMPETSTYIIDKFLVLAEKN--ELETVMVINKMDLYDEDD------------LRKVRELEEIYSGL   72 (225)
T ss_dssp             TEESCCEEEEEECSSTTCCCHHHHHHHHHHHHHT--TCEEEEEECCGGGCCHHH------------HHHHHHHHHHHTTT
T ss_pred             CcccCCEEEEEEeCCCCCCCHHHHHHHHHHHHHc--CCCEEEEEeCcccCCHHH------------HHHHHHhhcccccc
Confidence            3468899999999988644333337777777666  899999999999965321            222333334332 2


Q ss_pred             CceEEeccCCCCCHHHHHHHHH
Q 036449          153 PAYIECSSKTQQNVKAVFDAAI  174 (197)
Q Consensus       153 ~~~~~~sa~~~~~i~~l~~~i~  174 (197)
                      .+.+.+|++++.|++++...+.
T Consensus        73 ~~v~~vSa~~~~g~~~L~~~l~   94 (225)
T d1u0la2          73 YPIVKTSAKTGMGIEELKEYLK   94 (225)
T ss_dssp             SCEEECCTTTCTTHHHHHHHHS
T ss_pred             eeEEEeccccchhHhhHHHHhc
Confidence            2789999999999999988763

>d1t9ha2 c.37.1.8 (A:68-298) Probable GTPase EngC (YjeQ), C-terminal domain {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngC (YjeQ), C-terminal domain
species: Bacillus subtilis [TaxId: 1423]

Probab=98.33  E-value=5.3e-08  Score=67.26  Aligned_cols=22  Identities=32%  Similarity=0.493  Sum_probs=19.2

Q ss_pred             EEEEEcCCCCCHHHHHHHHhhC
Q 036449            8 KCVTVGDGAVGKTCLLISYTSN   29 (197)
Q Consensus         8 ~i~v~G~~~~GKstli~~~~~~   29 (197)
                      ..+++|++|||||||+|++...
T Consensus        99 ~~vl~G~SGVGKSSLiN~L~~~  120 (231)
T d1t9ha2          99 TTVFAGQSGVGKSSLLNAISPE  120 (231)
T ss_dssp             EEEEEESHHHHHHHHHHHHCC-
T ss_pred             eEEEECCCCccHHHHHHhhccH
Confidence            4679999999999999999865

>d1t9ha2 c.37.1.8 (A:68-298) Probable GTPase EngC (YjeQ), C-terminal domain {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngC (YjeQ), C-terminal domain
species: Bacillus subtilis [TaxId: 1423]

Probab=98.20  E-value=5.5e-07  Score=62.09  Aligned_cols=84  Identities=21%  Similarity=0.241  Sum_probs=60.4

Q ss_pred             cCCCcEEEEEEeCCCch-hHHHHHHHHHHHHhhhCCCCCEEEEeeCCcccCCcccccCCCCCCcccHHHH---HHHHHHh
Q 036449           75 YRGADVFILAFSLISKA-SYENVSKKWIPELKHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPISTAQG---EELRKLI  150 (197)
Q Consensus        75 ~~~~~~~i~v~d~~~~~-s~~~~~~~~~~~i~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~  150 (197)
                      ..+.|.+++|+++.+|. +...+ ++++......  +++.+||+||+||.+...           ..+..   .+.....
T Consensus         8 vANiD~~~iV~s~~~P~~~~~~i-dR~Lv~a~~~--~i~pvIvlnK~DL~~~~~-----------~~~~~~~~~~~y~~~   73 (231)
T d1t9ha2           8 ICNVDQAVLVFSAVQPSFSTALL-DRFLVLVEAN--DIQPIICITKMDLIEDQD-----------TEDTIQAYAEDYRNI   73 (231)
T ss_dssp             EECCCEEEEEEESTTTTCCHHHH-HHHHHHHHTT--TCEEEEEEECGGGCCCHH-----------HHHHHHHHHHHHHHH
T ss_pred             ccccCEEEEEEECCCCCCCHHHH-HHHHHHHHHc--CCCEEEEEecccccccHH-----------HHHHHHHHHHHHhhc
Confidence            46889999999998764 34444 6777666655  899999999999976432           11222   2333455


Q ss_pred             CCCceEEeccCCCCCHHHHHHHH
Q 036449          151 GAPAYIECSSKTQQNVKAVFDAA  173 (197)
Q Consensus       151 ~~~~~~~~sa~~~~~i~~l~~~i  173 (197)
                      +. +++.+|++++.|++++...+
T Consensus        74 g~-~v~~~Sa~~~~gl~~L~~~l   95 (231)
T d1t9ha2          74 GY-DVYLTSSKDQDSLADIIPHF   95 (231)
T ss_dssp             TC-CEEECCHHHHTTCTTTGGGG
T ss_pred             cc-cceeeecCChhHHHHHHHhh
Confidence            77 89999999999998877654

>d1puja_ c.37.1.8 (A:) Probable GTPase YlqF {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase YlqF
species: Bacillus subtilis [TaxId: 1423]

Probab=98.20  E-value=6.2e-07  Score=63.94  Aligned_cols=89  Identities=17%  Similarity=0.062  Sum_probs=61.1

Q ss_pred             cCcCCCcEEEEEEeCCCchhHHHHHHHHHHHHhhhCCCCCEEEEeeCCcccCCcccccCCCCCCcccHHHHHHHHHHhCC
Q 036449           73 LSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPISTAQGEELRKLIGA  152 (197)
Q Consensus        73 ~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  152 (197)
                      ..+..+|++|+|.|+.+|.+...-  .+...    ..+.|+++|+||+|+.+...            .+...++....+.
T Consensus        11 ~~i~~~DvIl~V~DaR~P~ss~~~--~l~~~----~~~Kp~IlVlNK~DLv~~~~------------~~~w~~~f~~~~~   72 (273)
T d1puja_          11 EKLKLIDIVYELVDARIPMSSRNP--MIEDI----LKNKPRIMLLNKADKADAAV------------TQQWKEHFENQGI   72 (273)
T ss_dssp             HHGGGCSEEEEEEETTSTTTTSCH--HHHHH----CSSSCEEEEEECGGGSCHHH------------HHHHHHHHHTTTC
T ss_pred             HHHHhCCEEEEEEECCCCCCCCCH--HHHHH----HcCCCeEEEEECccCCchHH------------HHHHHHHHHhcCC
Confidence            357789999999999988665432  22222    23679999999999965321            1222233333444


Q ss_pred             CceEEeccCCCCCHHHHHHHHHHHHcCC
Q 036449          153 PAYIECSSKTQQNVKAVFDAAIRVVLQP  180 (197)
Q Consensus       153 ~~~~~~sa~~~~~i~~l~~~i~~~~~~~  180 (197)
                       ..+.+|+.++.+..++...+.+.+.+.
T Consensus        73 -~~i~isa~~~~~~~~~~~~~~~~l~~~   99 (273)
T d1puja_          73 -RSLSINSVNGQGLNQIVPASKEILQEK   99 (273)
T ss_dssp             -CEEECCTTTCTTGGGHHHHHHHHHHHH
T ss_pred             -ccceeecccCCCccccchhhhhhhhhh
Confidence             789999999999988888777765543

>d1nija1 c.37.1.10 (A:2-223) Hypothetical protein YjiA, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Hypothetical protein YjiA, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=98.03  E-value=1.3e-05  Score=55.05  Aligned_cols=25  Identities=24%  Similarity=0.174  Sum_probs=21.4

Q ss_pred             ceeEEEEEcCCCCCHHHHHHHHhhC
Q 036449            5 RFIKCVTVGDGAVGKTCLLISYTSN   29 (197)
Q Consensus         5 ~~~~i~v~G~~~~GKstli~~~~~~   29 (197)
                      +..-+++.|.-|||||||+++++..
T Consensus         2 ~iPv~iitGFLGaGKTTll~~lL~~   26 (222)
T d1nija1           2 PIAVTLLTGFLGAGKTTLLRHILNE   26 (222)
T ss_dssp             CEEEEEEEESSSSSCHHHHHHHHHS
T ss_pred             CCCEEEEeeCCCCCHHHHHHHHHhc
Confidence            3455789999999999999999875

>d1qf9a_ c.37.1.1 (A:) UMP/CMP kinase {Dictyostelium discoideum [TaxId: 44689]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: UMP/CMP kinase
species: Dictyostelium discoideum [TaxId: 44689]

Probab=98.00  E-value=2.2e-06  Score=57.74  Aligned_cols=28  Identities=18%  Similarity=0.139  Sum_probs=25.5

Q ss_pred             CCCCceeEEEEEcCCCCCHHHHHHHHhh
Q 036449            1 MSASRFIKCVTVGDGAVGKTCLLISYTS   28 (197)
Q Consensus         1 m~~~~~~~i~v~G~~~~GKstli~~~~~   28 (197)
                      |..+++..|+++|++||||||+...+..
T Consensus         1 ~~~~kp~iI~i~G~pGSGKsT~a~~La~   28 (194)
T d1qf9a_           1 MEKSKPNVVFVLGGPGSGKGTQCANIVR   28 (194)
T ss_dssp             CCCCCCEEEEEEESTTSSHHHHHHHHHH
T ss_pred             CCCCCCcEEEEECCCCCCHHHHHHHHHH
Confidence            7888989999999999999999988865

>d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein Aq_1292 {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Hypothetical kinase-like protein Aq 1292
species: Aquifex aeolicus [TaxId: 63363]

Probab=97.98  E-value=2e-06  Score=56.95  Aligned_cols=22  Identities=32%  Similarity=0.513  Sum_probs=20.3

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhh
Q 036449            7 IKCVTVGDGAVGKTCLLISYTS   28 (197)
Q Consensus         7 ~~i~v~G~~~~GKstli~~~~~   28 (197)
                      +||+++|++|+|||||++.+.+
T Consensus         1 ~ki~I~G~~G~GKSTLl~~i~~   22 (178)
T d1ye8a1           1 MKIIITGEPGVGKTTLVKKIVE   22 (178)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHH
T ss_pred             CEEEEECCCCcHHHHHHHHHHh
Confidence            5899999999999999988875

>d1y63a_ c.37.1.1 (A:) Probable kinase LmjF30.1890 {Leishmania major [TaxId: 5664]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Probable kinase LmjF30.1890
species: Leishmania major [TaxId: 5664]

Probab=97.87  E-value=4.4e-06  Score=54.87  Aligned_cols=26  Identities=19%  Similarity=0.245  Sum_probs=23.3

Q ss_pred             CCceeEEEEEcCCCCCHHHHHHHHhh
Q 036449            3 ASRFIKCVTVGDGAVGKTCLLISYTS   28 (197)
Q Consensus         3 ~~~~~~i~v~G~~~~GKstli~~~~~   28 (197)
                      .++.++|++.|++||||||+.+.|..
T Consensus         2 ~pk~~~I~i~G~~GsGKTT~~~~La~   27 (174)
T d1y63a_           2 QPKGINILITGTPGTGKTSMAEMIAA   27 (174)
T ss_dssp             CCSSCEEEEECSTTSSHHHHHHHHHH
T ss_pred             CCCCCEEEEEeCCCCCHHHHHHHHHH
Confidence            46789999999999999999988865

>d1lw7a2 c.37.1.1 (A:220-411) Transcriptional regulator NadR, ribosylnicotinamide kinase domain {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Transcriptional regulator NadR, ribosylnicotinamide kinase domain
species: Haemophilus influenzae [TaxId: 727]

Probab=97.80  E-value=4.9e-06  Score=55.16  Aligned_cols=23  Identities=17%  Similarity=0.280  Sum_probs=20.4

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhhC
Q 036449            7 IKCVTVGDGAVGKTCLLISYTSN   29 (197)
Q Consensus         7 ~~i~v~G~~~~GKstli~~~~~~   29 (197)
                      =+|+|.|++|||||||+++|...
T Consensus         8 K~I~i~G~~GsGKTTla~~La~~   30 (192)
T d1lw7a2           8 KTVAILGGESSGKSVLVNKLAAV   30 (192)
T ss_dssp             EEEEEECCTTSHHHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHH
Confidence            36999999999999999998763

>d2ak3a1 c.37.1.1 (A:0-124,A:162-225) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]

Probab=97.76  E-value=9.3e-06  Score=54.43  Aligned_cols=27  Identities=19%  Similarity=0.362  Sum_probs=24.0

Q ss_pred             CCceeEEEEEcCCCCCHHHHHHHHhhC
Q 036449            3 ASRFIKCVTVGDGAVGKTCLLISYTSN   29 (197)
Q Consensus         3 ~~~~~~i~v~G~~~~GKstli~~~~~~   29 (197)
                      +.+-++|+++|+|||||||+...+...
T Consensus         3 ~~r~mrIiliG~PGSGKtT~a~~La~~   29 (189)
T d2ak3a1           3 SARLLRAAIMGAPGSGKGTVSSRITKH   29 (189)
T ss_dssp             SSCCCEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CCcceeEEEECCCCCCHHHHHHHHHHH
Confidence            568899999999999999999888763

>d1rkba_ c.37.1.1 (A:) Adenylate kinase {Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]

Probab=97.75  E-value=7.1e-06  Score=53.72  Aligned_cols=23  Identities=30%  Similarity=0.303  Sum_probs=20.3

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHhh
Q 036449            6 FIKCVTVGDGAVGKTCLLISYTS   28 (197)
Q Consensus         6 ~~~i~v~G~~~~GKstli~~~~~   28 (197)
                      .++|+++|++||||||+.+.+..
T Consensus         4 ~~~I~i~G~pGsGKTTia~~La~   26 (173)
T d1rkba_           4 LPNILLTGTPGVGKTTLGKELAS   26 (173)
T ss_dssp             CCCEEEECSTTSSHHHHHHHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHHH
Confidence            46899999999999999988864

>d1zaka1 c.37.1.1 (A:3-127,A:159-222) Adenylate kinase {Maize (Zea mays) [TaxId: 4577]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Maize (Zea mays) [TaxId: 4577]

Probab=97.72  E-value=8e-06  Score=54.63  Aligned_cols=24  Identities=21%  Similarity=0.130  Sum_probs=21.2

Q ss_pred             ceeEEEEEcCCCCCHHHHHHHHhh
Q 036449            5 RFIKCVTVGDGAVGKTCLLISYTS   28 (197)
Q Consensus         5 ~~~~i~v~G~~~~GKstli~~~~~   28 (197)
                      ++++|+++|++||||||+...+..
T Consensus         2 ~Pm~I~i~GppGsGKsT~a~~La~   25 (189)
T d1zaka1           2 DPLKVMISGAPASGKGTQCELIKT   25 (189)
T ss_dssp             CSCCEEEEESTTSSHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHH
Confidence            568999999999999999987754

>d1ak2a1 c.37.1.1 (A:14-146,A:177-233) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]

Probab=97.72  E-value=1e-05  Score=54.10  Aligned_cols=25  Identities=16%  Similarity=0.223  Sum_probs=22.0

Q ss_pred             CceeEEEEEcCCCCCHHHHHHHHhh
Q 036449            4 SRFIKCVTVGDGAVGKTCLLISYTS   28 (197)
Q Consensus         4 ~~~~~i~v~G~~~~GKstli~~~~~   28 (197)
                      ++.+||+++|++||||||+...|..
T Consensus         1 p~~~riil~G~pGSGKsT~a~~La~   25 (190)
T d1ak2a1           1 PKGVRAVLLGPPGAGKGTQAPKLAK   25 (190)
T ss_dssp             CCCCEEEEECCTTSSHHHHHHHHHH
T ss_pred             CCccEEEEECCCCCCHHHHHHHHHH
Confidence            4668999999999999999987764

>d1np6a_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB
species: Escherichia coli [TaxId: 562]

Probab=97.68  E-value=1.1e-05  Score=52.57  Aligned_cols=21  Identities=24%  Similarity=0.132  Sum_probs=19.2

Q ss_pred             EEEEEcCCCCCHHHHHHHHhh
Q 036449            8 KCVTVGDGAVGKTCLLISYTS   28 (197)
Q Consensus         8 ~i~v~G~~~~GKstli~~~~~   28 (197)
                      -|+|+|.+|||||||++++..
T Consensus         4 vi~itG~~GSGKTTL~~~L~~   24 (170)
T d1np6a_           4 LLAFAAWSGTGKTTLLKKLIP   24 (170)
T ss_dssp             EEEEECCTTSCHHHHHHHHHH
T ss_pred             EEEEEcCCCCCHHHHHHHHHH
Confidence            489999999999999999875

>d1zina1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=97.68  E-value=1.2e-05  Score=53.16  Aligned_cols=22  Identities=18%  Similarity=0.158  Sum_probs=19.6

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhh
Q 036449            7 IKCVTVGDGAVGKTCLLISYTS   28 (197)
Q Consensus         7 ~~i~v~G~~~~GKstli~~~~~   28 (197)
                      +||+++|+|||||||+...+..
T Consensus         1 m~I~i~G~pGSGKsT~a~~La~   22 (182)
T d1zina1           1 MNLVLMGLPGAGKGTQAEKIVA   22 (182)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHH
Confidence            5899999999999999987754

>d2cdna1 c.37.1.1 (A:1-181) Adenylate kinase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.62  E-value=1.8e-05  Score=52.48  Aligned_cols=23  Identities=13%  Similarity=0.329  Sum_probs=20.3

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhhC
Q 036449            7 IKCVTVGDGAVGKTCLLISYTSN   29 (197)
Q Consensus         7 ~~i~v~G~~~~GKstli~~~~~~   29 (197)
                      +||+++|++||||||+...+...
T Consensus         1 m~I~i~G~pGsGKsT~a~~La~~   23 (181)
T d2cdna1           1 MRVLLLGPPGAGKGTQAVKLAEK   23 (181)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHHH
Confidence            58999999999999999887643

>d1s3ga1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus globisporus [TaxId: 1459]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Bacillus globisporus [TaxId: 1459]

Probab=97.59  E-value=2e-05  Score=52.27  Aligned_cols=23  Identities=17%  Similarity=0.136  Sum_probs=20.1

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhhC
Q 036449            7 IKCVTVGDGAVGKTCLLISYTSN   29 (197)
Q Consensus         7 ~~i~v~G~~~~GKstli~~~~~~   29 (197)
                      ++|+++|++||||||+...|...
T Consensus         1 M~I~i~G~pGSGKsT~a~~La~~   23 (182)
T d1s3ga1           1 MNIVLMGLPGAGKGTQADRIVEK   23 (182)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHHH
Confidence            58999999999999999877653

>d1ly1a_ c.37.1.1 (A:) Polynucleotide kinase, kinase domain {Bacteriophage T4 [TaxId: 10665]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Polynucleotide kinase, kinase domain
species: Bacteriophage T4 [TaxId: 10665]

Probab=97.58  E-value=2e-05  Score=50.47  Aligned_cols=21  Identities=19%  Similarity=0.330  Sum_probs=18.6

Q ss_pred             EEEEcCCCCCHHHHHHHHhhC
Q 036449            9 CVTVGDGAVGKTCLLISYTSN   29 (197)
Q Consensus         9 i~v~G~~~~GKstli~~~~~~   29 (197)
                      |++.|++||||||+.+++...
T Consensus         5 Iii~G~pGsGKTTla~~L~~~   25 (152)
T d1ly1a_           5 ILTIGCPGSGKSTWAREFIAK   25 (152)
T ss_dssp             EEEECCTTSSHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHh
Confidence            788999999999999988653

>d1e4va1 c.37.1.1 (A:1-121,A:157-214) Adenylate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Escherichia coli [TaxId: 562]

Probab=97.55  E-value=2.2e-05  Score=51.87  Aligned_cols=22  Identities=14%  Similarity=0.187  Sum_probs=19.5

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhh
Q 036449            7 IKCVTVGDGAVGKTCLLISYTS   28 (197)
Q Consensus         7 ~~i~v~G~~~~GKstli~~~~~   28 (197)
                      +||+++|++||||||+.+.+..
T Consensus         1 m~I~i~G~pGSGKsT~~~~La~   22 (179)
T d1e4va1           1 MRIILLGAPVAGKGTQAQFIME   22 (179)
T ss_dssp             CEEEEEESTTSSHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHH
Confidence            5899999999999999977754

>d1ukza_ c.37.1.1 (A:) Uridylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Uridylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.53  E-value=3.5e-05  Score=51.69  Aligned_cols=28  Identities=14%  Similarity=0.143  Sum_probs=23.7

Q ss_pred             CCCCceeEEEEEcCCCCCHHHHHHHHhh
Q 036449            1 MSASRFIKCVTVGDGAVGKTCLLISYTS   28 (197)
Q Consensus         1 m~~~~~~~i~v~G~~~~GKstli~~~~~   28 (197)
                      +++++.-.|+++|++||||||+...+..
T Consensus         3 ~~~~~~~iI~i~GppGSGKsT~a~~La~   30 (196)
T d1ukza_           3 FSPDQVSVIFVLGGPGAGKGTQCEKLVK   30 (196)
T ss_dssp             SCTTTCEEEEEECSTTSSHHHHHHHHHH
T ss_pred             CCCCCCcEEEEECCCCCCHHHHHHHHHH
Confidence            3566777899999999999999988865

>d1yj5a2 c.37.1.1 (A:351-522) 5' polynucleotide kinase-3' phosphatase, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: 5' polynucleotide kinase-3' phosphatase, C-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.53  E-value=3.7e-05  Score=50.57  Aligned_cols=26  Identities=19%  Similarity=0.149  Sum_probs=22.0

Q ss_pred             CCceeEEEEEcCCCCCHHHHHHHHhh
Q 036449            3 ASRFIKCVTVGDGAVGKTCLLISYTS   28 (197)
Q Consensus         3 ~~~~~~i~v~G~~~~GKstli~~~~~   28 (197)
                      .++..-|+++|.+||||||+..++..
T Consensus        11 ~~~p~liil~G~pGsGKST~a~~l~~   36 (172)
T d1yj5a2          11 SPNPEVVVAVGFPGAGKSTFIQEHLV   36 (172)
T ss_dssp             CSSCCEEEEECCTTSSHHHHHHHHTG
T ss_pred             CCCCEEEEEECCCCCCHHHHHHHHHH
Confidence            34556799999999999999998864

>d1akya1 c.37.1.1 (A:3-130,A:169-220) Adenylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.50  E-value=3.1e-05  Score=51.26  Aligned_cols=23  Identities=22%  Similarity=0.248  Sum_probs=20.6

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHhh
Q 036449            6 FIKCVTVGDGAVGKTCLLISYTS   28 (197)
Q Consensus         6 ~~~i~v~G~~~~GKstli~~~~~   28 (197)
                      .++|+++|++||||||+...+..
T Consensus         2 ~mrIvl~G~pGSGKtT~a~~La~   24 (180)
T d1akya1           2 SIRMVLIGPPGAGKGTQAPNLQE   24 (180)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHH
T ss_pred             ceEEEEECCCCCCHHHHHHHHHH
Confidence            47999999999999999988765

>d2bdta1 c.37.1.25 (A:1-176) Hypothetical protein BH3686 {Bacillus halodurans [TaxId: 86665]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Atu3015-like
domain: Hypothetical protein BH3686
species: Bacillus halodurans [TaxId: 86665]

Probab=97.44  E-value=3.7e-05  Score=50.09  Aligned_cols=21  Identities=19%  Similarity=0.325  Sum_probs=18.8

Q ss_pred             EEEEcCCCCCHHHHHHHHhhC
Q 036449            9 CVTVGDGAVGKTCLLISYTSN   29 (197)
Q Consensus         9 i~v~G~~~~GKstli~~~~~~   29 (197)
                      |++.|++||||||+.+++...
T Consensus         5 I~i~G~~GsGKTTva~~L~~~   25 (176)
T d2bdta1           5 YIITGPAGVGKSTTCKRLAAQ   25 (176)
T ss_dssp             EEEECSTTSSHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHH
Confidence            889999999999999888753

>d1kaga_ c.37.1.2 (A:) Shikimate kinase (AroK) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Escherichia coli [TaxId: 562]

Probab=97.42  E-value=3.7e-05  Score=49.57  Aligned_cols=22  Identities=18%  Similarity=0.205  Sum_probs=19.4

Q ss_pred             EEEEEcCCCCCHHHHHHHHhhC
Q 036449            8 KCVTVGDGAVGKTCLLISYTSN   29 (197)
Q Consensus         8 ~i~v~G~~~~GKstli~~~~~~   29 (197)
                      .|+++|++||||||+.+.+...
T Consensus         4 ~I~l~G~~GsGKSTvak~La~~   25 (169)
T d1kaga_           4 NIFLVGPMGAGKSTIGRQLAQQ   25 (169)
T ss_dssp             CEEEECCTTSCHHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHHH
Confidence            5899999999999999888653

>d1f5na2 c.37.1.8 (A:7-283) Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.42  E-value=0.00011  Score=52.09  Aligned_cols=62  Identities=19%  Similarity=0.086  Sum_probs=38.5

Q ss_pred             ceeEEEEEcCCCCCHHHHHHHHhhCCCCCC----CCCceeeeeeEEEE-ECCeEEEEEEEeCCCccc
Q 036449            5 RFIKCVTVGDGAVGKTCLLISYTSNTFPTD----YVPTVFDNFSANVV-VNGSTVNLGLWDTAGQED   66 (197)
Q Consensus         5 ~~~~i~v~G~~~~GKstli~~~~~~~~~~~----~~~~~~~~~~~~~~-~~~~~~~~~i~D~~G~~~   66 (197)
                      +..-|.++|+.++|||+|+|.+++....-.    ..+.+......... ..+....+.++||.|...
T Consensus        31 ~v~vvsi~G~~~sGKS~llN~l~~~~~~f~~~~~~~~~T~Giw~~~~~~~~~~~~~~~~lDteG~~~   97 (277)
T d1f5na2          31 PMVVVAIVGLYRTGKSYLMNKLAGKKKGFSLGSTVQSHTKGIWMWCVPHPKKPGHILVLLDTEGLGD   97 (277)
T ss_dssp             BEEEEEEEEBTTSSHHHHHHHHTTCSSCSCCCCSSSCCCCSEEEEEEECSSSTTCEEEEEEECCBCC
T ss_pred             CEEEEEEECCCCCCHHHHHHHHcCCCCCCccCCCCCCCCCceEEEEeeccCCCCceEEEEecccccc
Confidence            456789999999999999999997653211    12222111111111 233445677999999654

>d1xjca_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=97.40  E-value=4.6e-05  Score=49.63  Aligned_cols=21  Identities=29%  Similarity=0.395  Sum_probs=18.0

Q ss_pred             EE-EEEcCCCCCHHHHHHHHhh
Q 036449            8 KC-VTVGDGAVGKTCLLISYTS   28 (197)
Q Consensus         8 ~i-~v~G~~~~GKstli~~~~~   28 (197)
                      || .|+|.+|||||||+.++..
T Consensus         2 kii~I~G~~gSGKTTli~~l~~   23 (165)
T d1xjca_           2 NVWQVVGYKHSGKTTLMEKWVA   23 (165)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHH
T ss_pred             cEEEEEeCCCCCHHHHHHHHHH
Confidence            44 5999999999999988864

>d2iyva1 c.37.1.2 (A:2-166) Shikimate kinase (AroK) {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.36  E-value=4.6e-05  Score=49.65  Aligned_cols=22  Identities=27%  Similarity=0.220  Sum_probs=18.9

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhh
Q 036449            7 IKCVTVGDGAVGKTCLLISYTS   28 (197)
Q Consensus         7 ~~i~v~G~~~~GKstli~~~~~   28 (197)
                      .+|+++|.+||||||+.+.+..
T Consensus         2 p~IvliG~~G~GKSTig~~La~   23 (165)
T d2iyva1           2 PKAVLVGLPGSGKSTIGRRLAK   23 (165)
T ss_dssp             CSEEEECSTTSSHHHHHHHHHH
T ss_pred             CcEEEECCCCCCHHHHHHHHHH
Confidence            4799999999999999877653

>d1gkya_ c.37.1.1 (A:) Guanylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.35  E-value=5.5e-05  Score=50.33  Aligned_cols=21  Identities=29%  Similarity=0.384  Sum_probs=19.0

Q ss_pred             EEEEcCCCCCHHHHHHHHhhC
Q 036449            9 CVTVGDGAVGKTCLLISYTSN   29 (197)
Q Consensus         9 i~v~G~~~~GKstli~~~~~~   29 (197)
                      |+|+|++|||||||++++...
T Consensus         4 Ivl~GpsG~GK~tl~~~L~~~   24 (186)
T d1gkya_           4 IVISGPSGTGKSTLLKKLFAE   24 (186)
T ss_dssp             EEEECCTTSSHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHh
Confidence            799999999999999998754

>d2i3ba1 c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Cancer-related NTPase, C1orf57
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.35  E-value=5.2e-05  Score=49.84  Aligned_cols=21  Identities=29%  Similarity=0.376  Sum_probs=18.3

Q ss_pred             EEEEEcCCCCCHHHHHHHHhh
Q 036449            8 KCVTVGDGAVGKTCLLISYTS   28 (197)
Q Consensus         8 ~i~v~G~~~~GKstli~~~~~   28 (197)
                      +|++.|++|+|||||+..+..
T Consensus         3 ~v~ItG~~GtGKTtl~~~i~~   23 (189)
T d2i3ba1           3 HVFLTGPPGVGKTTLIHKASE   23 (189)
T ss_dssp             CEEEESCCSSCHHHHHHHHHH
T ss_pred             EEEEECCCCCcHHHHHHHHHH
Confidence            489999999999999977663

>d1teva_ c.37.1.1 (A:) UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: UMP/CMP kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.34  E-value=6.9e-05  Score=50.00  Aligned_cols=23  Identities=13%  Similarity=0.125  Sum_probs=19.9

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHhh
Q 036449            6 FIKCVTVGDGAVGKTCLLISYTS   28 (197)
Q Consensus         6 ~~~i~v~G~~~~GKstli~~~~~   28 (197)
                      ++.|+++|++||||||....+..
T Consensus         1 p~iI~i~GppGSGKsT~a~~La~   23 (194)
T d1teva_           1 PLVVFVLGGPGAGKGTQCARIVE   23 (194)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHH
T ss_pred             CcEEEEECCCCCCHHHHHHHHHH
Confidence            36899999999999999977754

>d1kgda_ c.37.1.1 (A:) Guanylate kinase-like domain of Cask {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase-like domain of Cask
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.31  E-value=6.7e-05  Score=49.57  Aligned_cols=21  Identities=19%  Similarity=0.320  Sum_probs=19.1

Q ss_pred             EEEEcCCCCCHHHHHHHHhhC
Q 036449            9 CVTVGDGAVGKTCLLISYTSN   29 (197)
Q Consensus         9 i~v~G~~~~GKstli~~~~~~   29 (197)
                      |+++|++|+||+||++++...
T Consensus         6 ivl~Gpsg~GK~tl~~~L~~~   26 (178)
T d1kgda_           6 LVLLGAHGVGRRHIKNTLITK   26 (178)
T ss_dssp             EEEECCTTSSHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHh
Confidence            889999999999999998853

>d1znwa1 c.37.1.1 (A:20-201) Guanylate kinase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.31  E-value=6.5e-05  Score=49.71  Aligned_cols=21  Identities=29%  Similarity=0.408  Sum_probs=18.7

Q ss_pred             EEEEcCCCCCHHHHHHHHhhC
Q 036449            9 CVTVGDGAVGKTCLLISYTSN   29 (197)
Q Consensus         9 i~v~G~~~~GKstli~~~~~~   29 (197)
                      |+++|++|||||||++.+...
T Consensus         5 ivl~GpsG~GK~tl~~~L~~~   25 (182)
T d1znwa1           5 VVLSGPSAVGKSTVVRCLRER   25 (182)
T ss_dssp             EEEECSTTSSHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHhh
Confidence            789999999999999988754

>d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Haemolysin B ATP-binding protein
species: Escherichia coli [TaxId: 562]

Probab=97.31  E-value=6.7e-05  Score=51.99  Aligned_cols=22  Identities=23%  Similarity=0.126  Sum_probs=19.9

Q ss_pred             EEEEEcCCCCCHHHHHHHHhhC
Q 036449            8 KCVTVGDGAVGKTCLLISYTSN   29 (197)
Q Consensus         8 ~i~v~G~~~~GKstli~~~~~~   29 (197)
                      +|+++|++|+|||||++.+.+-
T Consensus        31 ~vaIvG~sGsGKSTLl~ll~gl   52 (241)
T d2pmka1          31 VIGIVGRSGSGKSTLTKLIQRF   52 (241)
T ss_dssp             EEEEECSTTSSHHHHHHHHTTS
T ss_pred             EEEEECCCCCCHHHHHHHHHhc
Confidence            5899999999999999888774

>d1bifa1 c.37.1.7 (A:37-249) 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain
domain: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.29  E-value=7e-05  Score=50.49  Aligned_cols=22  Identities=36%  Similarity=0.253  Sum_probs=19.3

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhh
Q 036449            7 IKCVTVGDGAVGKTCLLISYTS   28 (197)
Q Consensus         7 ~~i~v~G~~~~GKstli~~~~~   28 (197)
                      .-|+++|.|||||||+.+++..
T Consensus         3 ~li~l~GlpgsGKSTla~~L~~   24 (213)
T d1bifa1           3 TLIVMVGLPARGKTYISKKLTR   24 (213)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEEECCCCCCHHHHHHHHHH
Confidence            4589999999999999988874

>d1viaa_ c.37.1.2 (A:) Shikimate kinase (AroK) {Campylobacter jejuni [TaxId: 197]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Campylobacter jejuni [TaxId: 197]

Probab=97.25  E-value=7.5e-05  Score=48.43  Aligned_cols=21  Identities=24%  Similarity=0.241  Sum_probs=18.1

Q ss_pred             EEEEEcCCCCCHHHHHHHHhh
Q 036449            8 KCVTVGDGAVGKTCLLISYTS   28 (197)
Q Consensus         8 ~i~v~G~~~~GKstli~~~~~   28 (197)
                      +|+++|.+||||||+.+.+..
T Consensus         2 ~I~liG~~GsGKsTi~k~La~   22 (161)
T d1viaa_           2 NIVFIGFMGSGKSTLARALAK   22 (161)
T ss_dssp             CEEEECCTTSCHHHHHHHHHH
T ss_pred             cEEEECCCCCCHHHHHHHHHH
Confidence            589999999999999977643

>d1lvga_ c.37.1.1 (A:) Guanylate kinase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.24  E-value=8.7e-05  Score=49.54  Aligned_cols=20  Identities=30%  Similarity=0.381  Sum_probs=18.2

Q ss_pred             EEEEcCCCCCHHHHHHHHhh
Q 036449            9 CVTVGDGAVGKTCLLISYTS   28 (197)
Q Consensus         9 i~v~G~~~~GKstli~~~~~   28 (197)
                      |+++|++|||||||++.+..
T Consensus         3 Ivl~GPsGsGK~tl~~~L~~   22 (190)
T d1lvga_           3 VVLSGPSGAGKSTLLKKLFQ   22 (190)
T ss_dssp             EEEECCTTSSHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHH
Confidence            88999999999999988864

>d1khta_ c.37.1.1 (A:) Adenylate kinase {Archaeon Methanococcus voltae [TaxId: 2188]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Archaeon Methanococcus voltae [TaxId: 2188]

Probab=97.23  E-value=9.2e-05  Score=48.73  Aligned_cols=20  Identities=25%  Similarity=0.129  Sum_probs=17.5

Q ss_pred             EEEEcCCCCCHHHHHHHHhh
Q 036449            9 CVTVGDGAVGKTCLLISYTS   28 (197)
Q Consensus         9 i~v~G~~~~GKstli~~~~~   28 (197)
                      |++.|.+||||||+++.+..
T Consensus         4 I~i~G~~GsGKsT~~~~L~~   23 (190)
T d1khta_           4 VVVTGVPGVGSTTSSQLAMD   23 (190)
T ss_dssp             EEEECCTTSCHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHH
Confidence            78889999999999987753

>d2vp4a1 c.37.1.1 (A:12-208) Deoxyribonucleoside kinase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxyribonucleoside kinase
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=97.20  E-value=0.00011  Score=49.16  Aligned_cols=27  Identities=19%  Similarity=0.273  Sum_probs=23.6

Q ss_pred             CCCceeEEEEEcCCCCCHHHHHHHHhh
Q 036449            2 SASRFIKCVTVGDGAVGKTCLLISYTS   28 (197)
Q Consensus         2 ~~~~~~~i~v~G~~~~GKstli~~~~~   28 (197)
                      .+++.+-|++-|..||||||+++.+..
T Consensus         5 ~~~kp~~I~ieG~~GsGKTTl~~~L~~   31 (197)
T d2vp4a1           5 EGTQPFTVLIEGNIGSGKTTYLNHFEK   31 (197)
T ss_dssp             TTCCCEEEEEECSTTSCHHHHHHTTGG
T ss_pred             CCCCceEEEEECCCCCCHHHHHHHHHH
Confidence            456778999999999999999988765

>d1s96a_ c.37.1.1 (A:) Guanylate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Escherichia coli [TaxId: 562]

Probab=97.20  E-value=9.9e-05  Score=49.89  Aligned_cols=21  Identities=14%  Similarity=0.305  Sum_probs=18.9

Q ss_pred             EEEEcCCCCCHHHHHHHHhhC
Q 036449            9 CVTVGDGAVGKTCLLISYTSN   29 (197)
Q Consensus         9 i~v~G~~~~GKstli~~~~~~   29 (197)
                      |+++||+|||||||++++...
T Consensus         5 ivi~GPSG~GK~tl~~~L~~~   25 (205)
T d1s96a_           5 YIVSAPSGAGKSSLIQALLKT   25 (205)
T ss_dssp             EEEECCTTSCHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHhh
Confidence            789999999999999998754

>d1m8pa3 c.37.1.15 (A:391-573) ATP sulfurylase C-terminal domain {Fungus (Penicillium chrysogenum) [TaxId: 5076]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ATP sulfurylase C-terminal domain
domain: ATP sulfurylase C-terminal domain
species: Fungus (Penicillium chrysogenum) [TaxId: 5076]

Probab=97.19  E-value=0.00013  Score=47.61  Aligned_cols=25  Identities=12%  Similarity=0.072  Sum_probs=20.5

Q ss_pred             CceeEEEEEcCCCCCHHHHHHHHhh
Q 036449            4 SRFIKCVTVGDGAVGKTCLLISYTS   28 (197)
Q Consensus         4 ~~~~~i~v~G~~~~GKstli~~~~~   28 (197)
                      .+-.-|.++|.+||||||+.+.+..
T Consensus         4 ~~g~~I~l~G~~GsGKTTia~~La~   28 (183)
T d1m8pa3           4 TQGFTIFLTGYMNSGKDAIARALQV   28 (183)
T ss_dssp             TCCEEEEEECSTTSSHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHH
Confidence            3457799999999999999977653

>d1sxje2 c.37.1.20 (E:4-255) Replication factor C5 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C5
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.19  E-value=0.0019  Score=44.48  Aligned_cols=23  Identities=13%  Similarity=0.189  Sum_probs=19.6

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHhh
Q 036449            6 FIKCVTVGDGAVGKTCLLISYTS   28 (197)
Q Consensus         6 ~~~i~v~G~~~~GKstli~~~~~   28 (197)
                      ..++++.|++|+||||++..+..
T Consensus        33 ~~~lll~Gp~G~GKTt~~~~la~   55 (252)
T d1sxje2          33 LPHLLLYGPNGTGKKTRCMALLE   55 (252)
T ss_dssp             CCCEEEECSTTSSHHHHHHTHHH
T ss_pred             CCeEEEECCCCCCHHHHHHHHHH
Confidence            34699999999999999977765

>d1rz3a_ c.37.1.6 (A:) Hypothetical protein rbstp0775 {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Hypothetical protein rbstp0775
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=97.19  E-value=0.00014  Score=48.25  Aligned_cols=25  Identities=20%  Similarity=0.066  Sum_probs=21.2

Q ss_pred             CceeEEEEEcCCCCCHHHHHHHHhh
Q 036449            4 SRFIKCVTVGDGAVGKTCLLISYTS   28 (197)
Q Consensus         4 ~~~~~i~v~G~~~~GKstli~~~~~   28 (197)
                      ...+-|.|.|++|||||||.+.+..
T Consensus        20 ~~~~iIgI~G~~GSGKSTla~~L~~   44 (198)
T d1rz3a_          20 AGRLVLGIDGLSRSGKTTLANQLSQ   44 (198)
T ss_dssp             SSSEEEEEEECTTSSHHHHHHHHHH
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHH
Confidence            4456799999999999999988764

>d1e6ca_ c.37.1.2 (A:) Shikimate kinase (AroK) {Erwinia chrysanthemi [TaxId: 556]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Erwinia chrysanthemi [TaxId: 556]

Probab=97.19  E-value=0.00013  Score=47.64  Aligned_cols=20  Identities=20%  Similarity=0.175  Sum_probs=17.4

Q ss_pred             EEEEcCCCCCHHHHHHHHhh
Q 036449            9 CVTVGDGAVGKTCLLISYTS   28 (197)
Q Consensus         9 i~v~G~~~~GKstli~~~~~   28 (197)
                      |+++|.+||||||+.+.+..
T Consensus         5 Iil~G~~GsGKSTia~~LA~   24 (170)
T d1e6ca_           5 IFMVGARGCGMTTVGRELAR   24 (170)
T ss_dssp             EEEESCTTSSHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHH
Confidence            67899999999999987753

>d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA, C-terminal domain {Lactococcus lactis [TaxId: 1358]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Multidrug resistance ABC transporter LmrA, C-terminal domain
species: Lactococcus lactis [TaxId: 1358]

Probab=97.17  E-value=0.00012  Score=50.79  Aligned_cols=22  Identities=14%  Similarity=0.102  Sum_probs=19.6

Q ss_pred             EEEEEcCCCCCHHHHHHHHhhC
Q 036449            8 KCVTVGDGAVGKTCLLISYTSN   29 (197)
Q Consensus         8 ~i~v~G~~~~GKstli~~~~~~   29 (197)
                      .++++|++|+|||||++-+.+-
T Consensus        30 ~vaivG~sGsGKSTLl~ll~gl   51 (242)
T d1mv5a_          30 IIAFAGPSGGGKSTIFSLLERF   51 (242)
T ss_dssp             EEEEECCTTSSHHHHHHHHTTS
T ss_pred             EEEEECCCCCCHHHHHHHHHHh
Confidence            5899999999999999888764

>d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter MsbA, C-terminal domain {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Multidrug resistance ABC transporter MsbA, C-terminal domain
species: Salmonella typhimurium [TaxId: 90371]

Probab=97.16  E-value=0.00011  Score=51.33  Aligned_cols=22  Identities=23%  Similarity=0.237  Sum_probs=19.6

Q ss_pred             EEEEEcCCCCCHHHHHHHHhhC
Q 036449            8 KCVTVGDGAVGKTCLLISYTSN   29 (197)
Q Consensus         8 ~i~v~G~~~~GKstli~~~~~~   29 (197)
                      .++++|++|+|||||++.+.+-
T Consensus        43 ~iaivG~sGsGKSTLl~ll~gl   64 (253)
T d3b60a1          43 TVALVGRSGSGKSTIASLITRF   64 (253)
T ss_dssp             EEEEEECTTSSHHHHHHHHTTT
T ss_pred             EEEEECCCCChHHHHHHHHhcc
Confidence            5899999999999999888754

>d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Peptide transporter Tap1, C-terminal ABC domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.16  E-value=0.00012  Score=51.02  Aligned_cols=22  Identities=18%  Similarity=0.187  Sum_probs=19.7

Q ss_pred             EEEEEcCCCCCHHHHHHHHhhC
Q 036449            8 KCVTVGDGAVGKTCLLISYTSN   29 (197)
Q Consensus         8 ~i~v~G~~~~GKstli~~~~~~   29 (197)
                      .++++|++|+|||||++.+.+-
T Consensus        42 ~vaivG~sGsGKSTLl~li~gl   63 (251)
T d1jj7a_          42 VTALVGPNGSGKSTVAALLQNL   63 (251)
T ss_dssp             EEEEECSTTSSHHHHHHHHTTS
T ss_pred             EEEEECCCCCcHHHHHHHHhcc
Confidence            5899999999999999888764

>d1knqa_ c.37.1.17 (A:) Gluconate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Gluconate kinase
domain: Gluconate kinase
species: Escherichia coli [TaxId: 562]

Probab=97.13  E-value=0.00018  Score=46.63  Aligned_cols=22  Identities=18%  Similarity=0.193  Sum_probs=18.6

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhh
Q 036449            7 IKCVTVGDGAVGKTCLLISYTS   28 (197)
Q Consensus         7 ~~i~v~G~~~~GKstli~~~~~   28 (197)
                      -=++++|++||||||+.+.+..
T Consensus         7 ~iivl~G~~GsGKsT~a~~La~   28 (171)
T d1knqa_           7 HIYVLMGVSGSGKSAVASEVAH   28 (171)
T ss_dssp             EEEEEECSTTSCHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHH
Confidence            3466799999999999988765

>d1zp6a1 c.37.1.25 (A:6-181) Hypothetical protein Atu3015 {Agrobacterium tumefaciens [TaxId: 358]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Atu3015-like
domain: Hypothetical protein Atu3015
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=97.13  E-value=0.00013  Score=47.57  Aligned_cols=21  Identities=14%  Similarity=0.196  Sum_probs=18.3

Q ss_pred             EEEEcCCCCCHHHHHHHHhhC
Q 036449            9 CVTVGDGAVGKTCLLISYTSN   29 (197)
Q Consensus         9 i~v~G~~~~GKstli~~~~~~   29 (197)
                      |++.|++||||||+.+.+...
T Consensus         7 I~l~G~~GsGKSTia~~La~~   27 (176)
T d1zp6a1           7 LLLSGHPGSGKSTIAEALANL   27 (176)
T ss_dssp             EEEEECTTSCHHHHHHHHHTC
T ss_pred             EEEECCCCCCHHHHHHHHHHH
Confidence            789999999999999887653

>d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Maltose transport protein MalK, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=97.10  E-value=0.00015  Score=49.80  Aligned_cols=22  Identities=32%  Similarity=0.311  Sum_probs=19.1

Q ss_pred             EEEEEcCCCCCHHHHHHHHhhC
Q 036449            8 KCVTVGDGAVGKTCLLISYTSN   29 (197)
Q Consensus         8 ~i~v~G~~~~GKstli~~~~~~   29 (197)
                      -++++|++|||||||++-+.+-
T Consensus        28 i~~liGpsGsGKSTLl~~i~Gl   49 (232)
T d2awna2          28 FVVFVGPSGCGKSTLLRMIAGL   49 (232)
T ss_dssp             EEEEECCTTSSHHHHHHHHHTS
T ss_pred             EEEEECCCCChHHHHHHHHhcC
Confidence            3789999999999999877654

>d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: MJ0796
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=97.10  E-value=0.00014  Score=49.91  Aligned_cols=22  Identities=18%  Similarity=0.166  Sum_probs=18.7

Q ss_pred             EEEEEcCCCCCHHHHHHHHhhC
Q 036449            8 KCVTVGDGAVGKTCLLISYTSN   29 (197)
Q Consensus         8 ~i~v~G~~~~GKstli~~~~~~   29 (197)
                      -+.++|++|||||||++-+.+-
T Consensus        33 ~~~iiG~sGsGKSTLl~~i~gl   54 (230)
T d1l2ta_          33 FVSIMGPSGSGKSTMLNIIGCL   54 (230)
T ss_dssp             EEEEECSTTSSHHHHHHHHTTS
T ss_pred             EEEEECCCCCCcchhhHhccCC
Confidence            3789999999999999866654

>d1g6oa_ c.37.1.11 (A:) Hexameric traffic ATPase, HP0525 {Helicobacter pylori [TaxId: 210]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Hexameric traffic ATPase, HP0525
species: Helicobacter pylori [TaxId: 210]

Probab=97.07  E-value=0.00017  Score=52.12  Aligned_cols=27  Identities=19%  Similarity=0.154  Sum_probs=22.5

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhhCCCCC
Q 036449            7 IKCVTVGDGAVGKTCLLISYTSNTFPT   33 (197)
Q Consensus         7 ~~i~v~G~~~~GKstli~~~~~~~~~~   33 (197)
                      -+|+|.|+.||||||+++++...-...
T Consensus       167 ~nili~G~tgSGKTT~l~al~~~i~~~  193 (323)
T d1g6oa_         167 KNVIVCGGTGSGKTTYIKSIMEFIPKE  193 (323)
T ss_dssp             CCEEEEESTTSSHHHHHHHHGGGSCTT
T ss_pred             CCEEEEeeccccchHHHHHHhhhcccc
Confidence            469999999999999999998754333

>d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative ABC transporter PF0895
species: Pyrococcus furiosus [TaxId: 2261]

Probab=97.07  E-value=0.00016  Score=48.67  Aligned_cols=22  Identities=27%  Similarity=0.333  Sum_probs=19.5

Q ss_pred             EEEEEcCCCCCHHHHHHHHhhC
Q 036449            8 KCVTVGDGAVGKTCLLISYTSN   29 (197)
Q Consensus         8 ~i~v~G~~~~GKstli~~~~~~   29 (197)
                      .++++|+.|+|||||++.+.+-
T Consensus        29 i~~l~G~NGsGKSTLl~~i~gl   50 (200)
T d1sgwa_          29 VVNFHGPNGIGKTTLLKTISTY   50 (200)
T ss_dssp             CEEEECCTTSSHHHHHHHHTTS
T ss_pred             EEEEECCCCChHHHHHHHHhcc
Confidence            3789999999999999998764

>d1qhxa_ c.37.1.3 (A:) Chloramphenicol phosphotransferase {Streptomyces venezuelae [TaxId: 54571]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Chloramphenicol phosphotransferase
domain: Chloramphenicol phosphotransferase
species: Streptomyces venezuelae [TaxId: 54571]

Probab=97.07  E-value=0.00017  Score=46.95  Aligned_cols=21  Identities=19%  Similarity=0.294  Sum_probs=18.0

Q ss_pred             EEEEcCCCCCHHHHHHHHhhC
Q 036449            9 CVTVGDGAVGKTCLLISYTSN   29 (197)
Q Consensus         9 i~v~G~~~~GKstli~~~~~~   29 (197)
                      |++.|.+||||||+.+.|...
T Consensus         6 I~l~G~~GsGKsTva~~L~~~   26 (178)
T d1qhxa_           6 IILNGGSSAGKSGIVRCLQSV   26 (178)
T ss_dssp             EEEECCTTSSHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHH
Confidence            667799999999999888763

>d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.04  E-value=0.00017  Score=51.09  Aligned_cols=22  Identities=27%  Similarity=0.338  Sum_probs=19.7

Q ss_pred             EEEEEcCCCCCHHHHHHHHhhC
Q 036449            8 KCVTVGDGAVGKTCLLISYTSN   29 (197)
Q Consensus         8 ~i~v~G~~~~GKstli~~~~~~   29 (197)
                      .++++|+.|+|||||++.+.+-
T Consensus        64 ~vaivG~nGsGKSTLl~~i~Gl   85 (281)
T d1r0wa_          64 MLAITGSTGSGKTSLLMLILGE   85 (281)
T ss_dssp             EEEEEESTTSSHHHHHHHHHTS
T ss_pred             EEEEECCCCChHHHHHHHHhCC
Confidence            4899999999999999988764

>d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import ATP-binding protein WtpC (ModC) {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Molybdate/tungstate import ATP-binding protein WtpC (ModC)
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=97.03  E-value=0.00019  Score=49.47  Aligned_cols=22  Identities=27%  Similarity=0.468  Sum_probs=19.1

Q ss_pred             EEEEcCCCCCHHHHHHHHhhCC
Q 036449            9 CVTVGDGAVGKTCLLISYTSNT   30 (197)
Q Consensus         9 i~v~G~~~~GKstli~~~~~~~   30 (197)
                      ++++|+.|+|||||++.+.+-.
T Consensus        27 ~~liGpnGaGKSTll~~i~Gl~   48 (240)
T d2onka1          27 CVLLGPTGAGKSVFLELIAGIV   48 (240)
T ss_dssp             EEEECCTTSSHHHHHHHHHTSS
T ss_pred             EEEECCCCChHHHHHHHHHcCC
Confidence            5689999999999998888753

>d1vmaa2 c.37.1.10 (A:82-294) GTPase domain of the signal recognition particle receptor FtsY {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal recognition particle receptor FtsY
species: Thermotoga maritima [TaxId: 2336]

Probab=97.02  E-value=0.0003  Score=47.66  Aligned_cols=25  Identities=20%  Similarity=0.106  Sum_probs=20.2

Q ss_pred             CCCceeEEEEEcCCCCCHHHHHHHH
Q 036449            2 SASRFIKCVTVGDGAVGKTCLLISY   26 (197)
Q Consensus         2 ~~~~~~~i~v~G~~~~GKstli~~~   26 (197)
                      ++.+..-|+++|++||||||.+-++
T Consensus         7 ~~~~p~vi~lvGptGvGKTTTiAKL   31 (213)
T d1vmaa2           7 PPEPPFVIMVVGVNGTGKTTSCGKL   31 (213)
T ss_dssp             CSSSCEEEEEECCTTSSHHHHHHHH
T ss_pred             CCCCCEEEEEECCCCCCHHHHHHHH
Confidence            3456678899999999999998544

>d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Hypothetical protein PH0022, N-terminal domain
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=97.00  E-value=0.00021  Score=49.27  Aligned_cols=22  Identities=27%  Similarity=0.212  Sum_probs=19.4

Q ss_pred             EEEEEcCCCCCHHHHHHHHhhC
Q 036449            8 KCVTVGDGAVGKTCLLISYTSN   29 (197)
Q Consensus         8 ~i~v~G~~~~GKstli~~~~~~   29 (197)
                      -+.++|++|+|||||++-+.+-
T Consensus        34 ~~~liGpsGaGKSTLl~~i~Gl   55 (239)
T d1v43a3          34 FLVLLGPSGCGKTTTLRMIAGL   55 (239)
T ss_dssp             EEEEECCTTSSHHHHHHHHHTS
T ss_pred             EEEEECCCCChHHHHHHHHHcC
Confidence            3789999999999999988765

>d3adka_ c.37.1.1 (A:) Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=96.99  E-value=0.00019  Score=47.82  Aligned_cols=23  Identities=17%  Similarity=0.083  Sum_probs=19.6

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhhC
Q 036449            7 IKCVTVGDGAVGKTCLLISYTSN   29 (197)
Q Consensus         7 ~~i~v~G~~~~GKstli~~~~~~   29 (197)
                      --|+++|+|||||||+...+...
T Consensus         9 ~iI~l~G~pGSGKsT~a~~La~~   31 (194)
T d3adka_           9 KIIFVVGGPGSGKGTQCEKIVQK   31 (194)
T ss_dssp             CEEEEEECTTSSHHHHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHHHHH
Confidence            34889999999999999888653

>d1q3ta_ c.37.1.1 (A:) CMP kinase {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: CMP kinase
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=96.98  E-value=0.00024  Score=48.26  Aligned_cols=24  Identities=17%  Similarity=0.217  Sum_probs=20.7

Q ss_pred             ceeEEEEEcCCCCCHHHHHHHHhh
Q 036449            5 RFIKCVTVGDGAVGKTCLLISYTS   28 (197)
Q Consensus         5 ~~~~i~v~G~~~~GKstli~~~~~   28 (197)
                      +.++|++-|++||||||+...+..
T Consensus         2 k~i~IaIdGp~GsGKgT~ak~La~   25 (223)
T d1q3ta_           2 KTIQIAIDGPASSGKSTVAKIIAK   25 (223)
T ss_dssp             CCCEEEEECSSCSSHHHHHHHHHH
T ss_pred             CceEEEEECCCCCCHHHHHHHHHH
Confidence            457899999999999999977764

>d1jbka_ c.37.1.20 (A:) ClpB, AAA+ modules {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpB, AAA+ modules
species: Escherichia coli [TaxId: 562]

Probab=96.97  E-value=0.00023  Score=47.41  Aligned_cols=24  Identities=25%  Similarity=0.336  Sum_probs=19.8

Q ss_pred             ceeEEEEEcCCCCCHHHHHHHHhh
Q 036449            5 RFIKCVTVGDGAVGKTCLLISYTS   28 (197)
Q Consensus         5 ~~~~i~v~G~~~~GKstli~~~~~   28 (197)
                      +.=+++++|++|+|||+++..+..
T Consensus        42 ~k~n~lLvG~pGVGKTalv~~LA~   65 (195)
T d1jbka_          42 TKNNPVLIGEPGVGKTAIVEGLAQ   65 (195)
T ss_dssp             SSCEEEEECCTTSCHHHHHHHHHH
T ss_pred             CCCCeEEEecCCcccHHHHHHHHH
Confidence            445899999999999999966553

>d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative multidrug export ATP-binding/permease protein SAV1866
species: Staphylococcus aureus [TaxId: 1280]

Probab=96.96  E-value=0.00013  Score=50.94  Aligned_cols=21  Identities=24%  Similarity=0.232  Sum_probs=18.5

Q ss_pred             EEEEEcCCCCCHHHHHHHHhh
Q 036449            8 KCVTVGDGAVGKTCLLISYTS   28 (197)
Q Consensus         8 ~i~v~G~~~~GKstli~~~~~   28 (197)
                      +++++|++|+|||||++.+.+
T Consensus        46 ~vaivG~sGsGKSTLl~ll~g   66 (255)
T d2hyda1          46 TVAFVGMSGGGKSTLINLIPR   66 (255)
T ss_dssp             EEEEECSTTSSHHHHHTTTTT
T ss_pred             EEEEECCCCCcHHHHHHHHHh
Confidence            689999999999999976654

>d1gvnb_ c.37.1.21 (B:) Plasmid maintenance system epsilon/zeta, toxin zeta subunit {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Plasmid maintenance system epsilon/zeta, toxin zeta subunit
domain: Plasmid maintenance system epsilon/zeta, toxin zeta subunit
species: Streptococcus pyogenes [TaxId: 1314]

Probab=96.96  E-value=0.00028  Score=49.32  Aligned_cols=23  Identities=22%  Similarity=0.183  Sum_probs=19.8

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhhC
Q 036449            7 IKCVTVGDGAVGKTCLLISYTSN   29 (197)
Q Consensus         7 ~~i~v~G~~~~GKstli~~~~~~   29 (197)
                      --|++.|++|+|||||..++...
T Consensus        33 ~~ilL~GpPGtGKT~la~~la~~   55 (273)
T d1gvnb_          33 TAFLLGGQPGSGKTSLRSAIFEE   55 (273)
T ss_dssp             EEEEEECCTTSCTHHHHHHHHHH
T ss_pred             EEEEEECCCCCCHHHHHHHHHHH
Confidence            34999999999999999888653

>d1j8yf2 c.37.1.10 (F:87-297) GTPase domain of the signal sequence recognition protein Ffh {Archaeon Acidianus ambivalens [TaxId: 2283]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal sequence recognition protein Ffh
species: Archaeon Acidianus ambivalens [TaxId: 2283]

Probab=96.95  E-value=0.00027  Score=47.82  Aligned_cols=91  Identities=16%  Similarity=0.071  Sum_probs=49.3

Q ss_pred             EEEEEEeCCCcccccc------ccccC--cCCCcEEEEEEeCCCchh-HHHHHHHHHHHHhhhCCCCCEEEEeeCCcccC
Q 036449           54 VNLGLWDTAGQEDYNR------LRPLS--YRGADVFILAFSLISKAS-YENVSKKWIPELKHYAPGVPIILVGTKLDLRD  124 (197)
Q Consensus        54 ~~~~i~D~~G~~~~~~------~~~~~--~~~~~~~i~v~d~~~~~s-~~~~~~~~~~~i~~~~~~~~~ivv~nK~D~~~  124 (197)
                      ..+.++||+|-..+..      ....+  .-..+-+++|.|.+.... .+.+ ..   .....   -+--++.||.|...
T Consensus        95 ~d~IlIDTaGr~~~~~~~~~~~el~~~~~~~~~~~~~LVl~a~~~~~~~~~~-~~---~~~~~---~~~~lI~TKlDet~  167 (211)
T d1j8yf2          95 MEIIIVDTAGRHGYGEEAALLEEMKNIYEAIKPDEVTLVIDASIGQKAYDLA-SK---FNQAS---KIGTIIITKMDGTA  167 (211)
T ss_dssp             CSEEEEECCCSCCTTCHHHHHHHHHHHHHHHCCSEEEEEEEGGGGGGHHHHH-HH---HHHHC---TTEEEEEECTTSCS
T ss_pred             CceEEEecCCcCccchhhHHHHHHHHHHhhcCCceEEEEEecccCcchHHHH-hh---hhccc---CcceEEEecccCCC
Confidence            3567999999533221      00111  123568899999876543 2222 22   22222   23346799999865


Q ss_pred             CcccccCCCCCCcccHHHHHHHHHHhCCCceEEeccCCCCCHHH
Q 036449          125 DKQFFIDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQQNVKA  168 (197)
Q Consensus       125 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~  168 (197)
                      .-              =.+.......+. |+..++  +|.++++
T Consensus       168 ~~--------------G~~l~~~~~~~l-Pi~~it--~Gq~v~D  194 (211)
T d1j8yf2         168 KG--------------GGALSAVAATGA-TIKFIG--TGEKIDE  194 (211)
T ss_dssp             CH--------------HHHHHHHHTTTC-CEEEEE--CSSSTTC
T ss_pred             cc--------------cHHHHHHHHHCc-CEEEEe--CCCCccc
Confidence            32              334566667777 665555  3555543

>d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein MetN {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Methionine import ATP-binding protein MetN
species: Escherichia coli [TaxId: 562]

Probab=96.95  E-value=0.0002  Score=49.37  Aligned_cols=21  Identities=19%  Similarity=0.259  Sum_probs=18.9

Q ss_pred             EEEEcCCCCCHHHHHHHHhhC
Q 036449            9 CVTVGDGAVGKTCLLISYTSN   29 (197)
Q Consensus         9 i~v~G~~~~GKstli~~~~~~   29 (197)
                      +.++|++|||||||++-+.+-
T Consensus        34 ~~iiG~sGsGKSTLl~~i~Gl   54 (240)
T d3dhwc1          34 YGVIGASGAGKSTLIRCVNLL   54 (240)
T ss_dssp             EEEEESTTSSHHHHHHHHTTS
T ss_pred             EEEECCCCCCHHHHHHHHcCC
Confidence            789999999999999888764

>d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK, N-terminal domain {Archaeon Thermococcus litoralis [TaxId: 2265]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Maltose transport protein MalK, N-terminal domain
species: Archaeon Thermococcus litoralis [TaxId: 2265]

Probab=96.95  E-value=0.00024  Score=49.00  Aligned_cols=22  Identities=23%  Similarity=0.217  Sum_probs=19.4

Q ss_pred             EEEEEcCCCCCHHHHHHHHhhC
Q 036449            8 KCVTVGDGAVGKTCLLISYTSN   29 (197)
Q Consensus         8 ~i~v~G~~~~GKstli~~~~~~   29 (197)
                      .+.++|++|+|||||++.+.+-
T Consensus        31 ~~~liG~sGaGKSTll~~i~gl   52 (240)
T d1g2912          31 FMILLGPSGCGKTTTLRMIAGL   52 (240)
T ss_dssp             EEEEECSTTSSHHHHHHHHHTS
T ss_pred             EEEEECCCCChHHHHHHHHhcC
Confidence            4789999999999999888764

>d1htwa_ c.37.1.18 (A:) Hypothetical protein HI0065 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: YjeE-like
domain: Hypothetical protein HI0065
species: Haemophilus influenzae [TaxId: 727]

Probab=96.93  E-value=0.00089  Score=42.91  Aligned_cols=26  Identities=27%  Similarity=0.218  Sum_probs=21.4

Q ss_pred             ceeEEEEEcCCCCCHHHHHHHHhhCC
Q 036449            5 RFIKCVTVGDGAVGKTCLLISYTSNT   30 (197)
Q Consensus         5 ~~~~i~v~G~~~~GKstli~~~~~~~   30 (197)
                      +..-|++-|+-|+|||||++.+...-
T Consensus        32 ~g~ii~L~G~LGaGKTtfvr~~~~~l   57 (158)
T d1htwa_          32 KAIMVYLNGDLGAGKTTLTRGMLQGI   57 (158)
T ss_dssp             SCEEEEEECSTTSSHHHHHHHHHHHT
T ss_pred             CCeEEEEecCCCccHHHHHHHHHhhc
Confidence            34568899999999999999888643

>d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter, ATP-binding protein {Methanosarcina acetivorans [TaxId: 2214]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Sulfate/molybdate ABC transporter, ATP-binding protein
species: Methanosarcina acetivorans [TaxId: 2214]

Probab=96.92  E-value=0.00016  Score=49.54  Aligned_cols=22  Identities=27%  Similarity=0.276  Sum_probs=19.7

Q ss_pred             EEEEcCCCCCHHHHHHHHhhCC
Q 036449            9 CVTVGDGAVGKTCLLISYTSNT   30 (197)
Q Consensus         9 i~v~G~~~~GKstli~~~~~~~   30 (197)
                      ++++|++|+|||||++.+.+-.
T Consensus        29 ~~liGpsGaGKSTll~~l~Gl~   50 (229)
T d3d31a2          29 FVILGPTGAGKTLFLELIAGFH   50 (229)
T ss_dssp             EEEECCCTHHHHHHHHHHHTSS
T ss_pred             EEEECCCCCcHHHHHHHHhcCc
Confidence            7899999999999999888753

>d1x6va3 c.37.1.4 (A:34-228) Adenosine-5'phosphosulfate kinase (APS kinase) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Adenosine-5'phosphosulfate kinase (APS kinase)
domain: Adenosine-5'phosphosulfate kinase (APS kinase)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.88  E-value=0.00015  Score=48.13  Aligned_cols=22  Identities=18%  Similarity=0.213  Sum_probs=19.2

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhh
Q 036449            7 IKCVTVGDGAVGKTCLLISYTS   28 (197)
Q Consensus         7 ~~i~v~G~~~~GKstli~~~~~   28 (197)
                      ..|.++|.+||||||+.+.|..
T Consensus        20 ~vI~L~G~pGSGKTTiAk~La~   41 (195)
T d1x6va3          20 CTVWLTGLSGAGKTTVSMALEE   41 (195)
T ss_dssp             EEEEEESSCHHHHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHH
Confidence            5688999999999999988754

>d1nksa_ c.37.1.1 (A:) Adenylate kinase {Archaeon Sulfolobus acidocaldarius [TaxId: 2285]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Archaeon Sulfolobus acidocaldarius [TaxId: 2285]

Probab=96.88  E-value=0.00027  Score=46.54  Aligned_cols=21  Identities=29%  Similarity=0.441  Sum_probs=17.0

Q ss_pred             eEE-EEEcCCCCCHHHHHHHHh
Q 036449            7 IKC-VTVGDGAVGKTCLLISYT   27 (197)
Q Consensus         7 ~~i-~v~G~~~~GKstli~~~~   27 (197)
                      +|| ++.|.+||||||+++.+.
T Consensus         1 mkiivi~G~~GsGKTT~~~~La   22 (194)
T d1nksa_           1 MKIGIVTGIPGVGKSTVLAKVK   22 (194)
T ss_dssp             CEEEEEEECTTSCHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHH
Confidence            355 457999999999997775

>d1ixsb2 c.37.1.20 (B:4-242) Holliday junction helicase RuvB {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Holliday junction helicase RuvB
species: Thermus thermophilus [TaxId: 274]

Probab=96.85  E-value=0.00035  Score=48.06  Aligned_cols=24  Identities=21%  Similarity=0.246  Sum_probs=20.7

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHhhC
Q 036449            6 FIKCVTVGDGAVGKTCLLISYTSN   29 (197)
Q Consensus         6 ~~~i~v~G~~~~GKstli~~~~~~   29 (197)
                      .-.+++.|++|+||||+++.+...
T Consensus        35 ~~~~Ll~GPpG~GKTtla~~la~~   58 (239)
T d1ixsb2          35 LEHLLLFGPPGLGKTTLAHVIAHE   58 (239)
T ss_dssp             CCCEEEECCTTSCHHHHHHHHHHH
T ss_pred             CCeEEEECCCCCCHHHHHHHHHHH
Confidence            457999999999999999888653

>d1r6bx2 c.37.1.20 (X:169-436) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpA, an Hsp100 chaperone, AAA+ modules
species: Escherichia coli [TaxId: 562]

Probab=96.84  E-value=0.00032  Score=49.19  Aligned_cols=24  Identities=29%  Similarity=0.324  Sum_probs=19.8

Q ss_pred             ceeEEEEEcCCCCCHHHHHHHHhh
Q 036449            5 RFIKCVTVGDGAVGKTCLLISYTS   28 (197)
Q Consensus         5 ~~~~i~v~G~~~~GKstli~~~~~   28 (197)
                      ..=+++++|++|+|||+++..+..
T Consensus        38 ~k~n~lLVG~~GvGKTalv~~la~   61 (268)
T d1r6bx2          38 RKNNPLLVGESGVGKTAIAEGLAW   61 (268)
T ss_dssp             SSCEEEEECCTTSSHHHHHHHHHH
T ss_pred             ccCCcEEECCCCCcHHHHHHHHHH
Confidence            345899999999999999966553

>d2qy9a2 c.37.1.10 (A:285-495) GTPase domain of the signal recognition particle receptor FtsY {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal recognition particle receptor FtsY
species: Escherichia coli [TaxId: 562]

Probab=96.83  E-value=0.00048  Score=46.49  Aligned_cols=24  Identities=25%  Similarity=0.224  Sum_probs=19.3

Q ss_pred             CceeEEEEEcCCCCCHHHHHHHHh
Q 036449            4 SRFIKCVTVGDGAVGKTCLLISYT   27 (197)
Q Consensus         4 ~~~~~i~v~G~~~~GKstli~~~~   27 (197)
                      .+..-|+++|++||||||.+-++-
T Consensus         7 ~~p~vi~lvGptGvGKTTTiAKLA   30 (211)
T d2qy9a2           7 KAPFVILMVGVNGVGKTTTIGKLA   30 (211)
T ss_dssp             CTTEEEEEECCTTSCHHHHHHHHH
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHH
Confidence            445668899999999999996553

>d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter {Thermotoga maritima, TM1139 [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Branched chain aminoacid ABC transporter
species: Thermotoga maritima, TM1139 [TaxId: 2336]

Probab=96.83  E-value=0.00032  Score=48.47  Aligned_cols=22  Identities=23%  Similarity=0.308  Sum_probs=19.7

Q ss_pred             EEEEcCCCCCHHHHHHHHhhCC
Q 036449            9 CVTVGDGAVGKTCLLISYTSNT   30 (197)
Q Consensus         9 i~v~G~~~~GKstli~~~~~~~   30 (197)
                      +.++|+.|+|||||++.+.+-.
T Consensus        35 ~~liGpnGaGKSTl~~~i~Gl~   56 (240)
T d1ji0a_          35 VTLIGANGAGKTTTLSAIAGLV   56 (240)
T ss_dssp             EEEECSTTSSHHHHHHHHTTSS
T ss_pred             EEEECCCCCcHHHHHHHHhCCC
Confidence            7899999999999999988753

>d1l7vc_ c.37.1.12 (C:) ABC transporter involved in vitamin B12 uptake, BtuD {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: ABC transporter involved in vitamin B12 uptake, BtuD
species: Escherichia coli [TaxId: 562]

Probab=96.83  E-value=0.00023  Score=48.93  Aligned_cols=21  Identities=29%  Similarity=0.349  Sum_probs=19.0

Q ss_pred             EEEEcCCCCCHHHHHHHHhhC
Q 036449            9 CVTVGDGAVGKTCLLISYTSN   29 (197)
Q Consensus         9 i~v~G~~~~GKstli~~~~~~   29 (197)
                      +.++|+.|+|||||++.+.+-
T Consensus        28 ~~iiG~nGaGKSTLl~~l~Gl   48 (231)
T d1l7vc_          28 LHLVGPNGAGKSTLLARMAGM   48 (231)
T ss_dssp             EECBCCTTSSHHHHHHHHHTS
T ss_pred             EEEECCCCCcHHHHHHHHhCC
Confidence            789999999999999988763

>d1uj2a_ c.37.1.6 (A:) Uridine-cytidine kinase 2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Uridine-cytidine kinase 2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.82  E-value=0.00042  Score=46.80  Aligned_cols=23  Identities=17%  Similarity=0.107  Sum_probs=19.9

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHhh
Q 036449            6 FIKCVTVGDGAVGKTCLLISYTS   28 (197)
Q Consensus         6 ~~~i~v~G~~~~GKstli~~~~~   28 (197)
                      ++-|.+.|++|||||||.+.+..
T Consensus         2 P~iIgI~G~~gSGKSTla~~L~~   24 (213)
T d1uj2a_           2 PFLIGVSGGTASGKSSVCAKIVQ   24 (213)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHHH
T ss_pred             CEEEEEECCCCCCHHHHHHHHHH
Confidence            46799999999999999987754

>d1in4a2 c.37.1.20 (A:17-254) Holliday junction helicase RuvB {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Holliday junction helicase RuvB
species: Thermotoga maritima [TaxId: 2336]

Probab=96.80  E-value=0.00039  Score=47.73  Aligned_cols=24  Identities=25%  Similarity=0.274  Sum_probs=20.4

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHhhC
Q 036449            6 FIKCVTVGDGAVGKTCLLISYTSN   29 (197)
Q Consensus         6 ~~~i~v~G~~~~GKstli~~~~~~   29 (197)
                      ...+++.|++|+||||+.+.+...
T Consensus        35 ~~~~L~~GPpGtGKT~lA~~la~~   58 (238)
T d1in4a2          35 LDHVLLAGPPGLGKTTLAHIIASE   58 (238)
T ss_dssp             CCCEEEESSTTSSHHHHHHHHHHH
T ss_pred             CCeEEEECCCCCcHHHHHHHHHhc
Confidence            346999999999999999887653

>d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine permease {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: ATP-binding subunit of the histidine permease
species: Salmonella typhimurium [TaxId: 90371]

Probab=96.79  E-value=0.00037  Score=48.68  Aligned_cols=22  Identities=18%  Similarity=0.217  Sum_probs=19.4

Q ss_pred             EEEEEcCCCCCHHHHHHHHhhC
Q 036449            8 KCVTVGDGAVGKTCLLISYTSN   29 (197)
Q Consensus         8 ~i~v~G~~~~GKstli~~~~~~   29 (197)
                      .+.++|++|+|||||++.+.+-
T Consensus        30 i~~iiG~sGsGKSTLl~~i~Gl   51 (258)
T d1b0ua_          30 VISIIGSSGSGKSTFLRCINFL   51 (258)
T ss_dssp             EEEEECCTTSSHHHHHHHHTTS
T ss_pred             EEEEECCCCCcHHHHHHHHHcC
Confidence            3789999999999999988754

>d1m7ga_ c.37.1.4 (A:) Adenosine-5'phosphosulfate kinase (APS kinase) {Fungus (Penicillium chrysogenum) [TaxId: 5076]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Adenosine-5'phosphosulfate kinase (APS kinase)
domain: Adenosine-5'phosphosulfate kinase (APS kinase)
species: Fungus (Penicillium chrysogenum) [TaxId: 5076]

Probab=96.74  E-value=0.00038  Score=47.05  Aligned_cols=26  Identities=23%  Similarity=0.236  Sum_probs=22.0

Q ss_pred             CCceeEEEEEcCCCCCHHHHHHHHhh
Q 036449            3 ASRFIKCVTVGDGAVGKTCLLISYTS   28 (197)
Q Consensus         3 ~~~~~~i~v~G~~~~GKstli~~~~~   28 (197)
                      ..+..-|.+.|.+|||||||.+.|..
T Consensus        21 ~~kg~vIwltGlsGsGKTTia~~L~~   46 (208)
T d1m7ga_          21 NQRGLTIWLTGLSASGKSTLAVELEH   46 (208)
T ss_dssp             TSSCEEEEEECSTTSSHHHHHHHHHH
T ss_pred             CCCCeEEEEECCCCCCHHHHHHHHHH
Confidence            44567799999999999999988764

>d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV, N-terminal domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Glucose transport protein GlcV, N-terminal domain
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=96.71  E-value=0.00021  Score=49.34  Aligned_cols=22  Identities=18%  Similarity=0.250  Sum_probs=19.7

Q ss_pred             EEEEEcCCCCCHHHHHHHHhhC
Q 036449            8 KCVTVGDGAVGKTCLLISYTSN   29 (197)
Q Consensus         8 ~i~v~G~~~~GKstli~~~~~~   29 (197)
                      .+.++|++|+|||||++.+.+-
T Consensus        33 ~~~iiG~sGsGKSTll~~i~gl   54 (242)
T d1oxxk2          33 RFGILGPSGAGKTTFMRIIAGL   54 (242)
T ss_dssp             EEEEECSCHHHHHHHHHHHHTS
T ss_pred             EEEEECCCCCcHHHHHHHHHcC
Confidence            4899999999999999888874

>d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative ABC transporter TM0544
species: Thermotoga maritima [TaxId: 2336]

Probab=96.69  E-value=0.00049  Score=47.44  Aligned_cols=22  Identities=23%  Similarity=0.208  Sum_probs=19.5

Q ss_pred             EEEEcCCCCCHHHHHHHHhhCC
Q 036449            9 CVTVGDGAVGKTCLLISYTSNT   30 (197)
Q Consensus         9 i~v~G~~~~GKstli~~~~~~~   30 (197)
                      +.++|+.|+|||||++.+.+-.
T Consensus        31 ~glvG~nGaGKSTLl~~l~G~~   52 (238)
T d1vpla_          31 FGLIGPNGAGKTTTLRIISTLI   52 (238)
T ss_dssp             EEEECCTTSSHHHHHHHHTTSS
T ss_pred             EEEECCCCCCHHHHHHHHhcCC
Confidence            6899999999999999888754

>d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: MJ1267
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=96.66  E-value=0.00051  Score=47.86  Aligned_cols=22  Identities=23%  Similarity=0.323  Sum_probs=19.7

Q ss_pred             EEEEcCCCCCHHHHHHHHhhCC
Q 036449            9 CVTVGDGAVGKTCLLISYTSNT   30 (197)
Q Consensus         9 i~v~G~~~~GKstli~~~~~~~   30 (197)
                      +.++|+.|+|||||++.+.+-.
T Consensus        33 ~~liG~nGaGKSTLl~~i~Gl~   54 (254)
T d1g6ha_          33 TLIIGPNGSGKSTLINVITGFL   54 (254)
T ss_dssp             EEEECSTTSSHHHHHHHHTTSS
T ss_pred             EEEECCCCCcHHHHHHHHHCCC
Confidence            7899999999999999988753

>d1fnna2 c.37.1.20 (A:1-276) CDC6, N-domain {Archaeon Pyrobaculum aerophilum [TaxId: 13773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CDC6, N-domain
species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]

Probab=96.62  E-value=0.00078  Score=46.82  Aligned_cols=24  Identities=21%  Similarity=0.249  Sum_probs=20.6

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHhhC
Q 036449            6 FIKCVTVGDGAVGKTCLLISYTSN   29 (197)
Q Consensus         6 ~~~i~v~G~~~~GKstli~~~~~~   29 (197)
                      .-.+++.|++|+|||++++.+...
T Consensus        43 ~~~lll~GppGtGKT~l~~~l~~~   66 (276)
T d1fnna2          43 YPRATLLGRPGTGKTVTLRKLWEL   66 (276)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CCceEEECCCCCCHHHHHHHHHHH
Confidence            357999999999999999887754

>d1iqpa2 c.37.1.20 (A:2-232) Replication factor C {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=96.61  E-value=0.00067  Score=46.33  Aligned_cols=23  Identities=22%  Similarity=0.287  Sum_probs=19.8

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHhh
Q 036449            6 FIKCVTVGDGAVGKTCLLISYTS   28 (197)
Q Consensus         6 ~~~i~v~G~~~~GKstli~~~~~   28 (197)
                      .-++++.|++|+||||+++.+..
T Consensus        45 ~~~lll~Gp~G~GKTtla~~iak   67 (231)
T d1iqpa2          45 MPHLLFAGPPGVGKTTAALALAR   67 (231)
T ss_dssp             CCEEEEESCTTSSHHHHHHHHHH
T ss_pred             CCeEEEECCCCCcHHHHHHHHHH
Confidence            34699999999999999987765

>d1d2na_ c.37.1.20 (A:) Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein {Chinese hamster (Cricetulus griseus) [TaxId: 10029]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein
species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]

Probab=96.55  E-value=0.001  Score=46.10  Aligned_cols=23  Identities=22%  Similarity=0.310  Sum_probs=20.1

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHhh
Q 036449            6 FIKCVTVGDGAVGKTCLLISYTS   28 (197)
Q Consensus         6 ~~~i~v~G~~~~GKstli~~~~~   28 (197)
                      .-.|++.|++|+|||++++.+.+
T Consensus        40 ~~~vLL~GppGtGKT~la~alA~   62 (246)
T d1d2na_          40 LVSVLLEGPPHSGKTALAAKIAE   62 (246)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHH
T ss_pred             CeEEEEECcCCCCHHHHHHHHhh
Confidence            34699999999999999988865

>d2fnaa2 c.37.1.20 (A:1-283) Archaeal ATPase SSO1545 {Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Archaeal ATPase SSO1545
species: Sulfolobus solfataricus [TaxId: 2287]

Probab=96.54  E-value=0.00062  Score=47.44  Aligned_cols=21  Identities=14%  Similarity=0.183  Sum_probs=18.4

Q ss_pred             EEEEEcCCCCCHHHHHHHHhh
Q 036449            8 KCVTVGDGAVGKTCLLISYTS   28 (197)
Q Consensus         8 ~i~v~G~~~~GKstli~~~~~   28 (197)
                      .|+|.|++|+|||||+.++..
T Consensus        31 ~i~i~G~~G~GKTsLl~~~~~   51 (283)
T d2fnaa2          31 ITLVLGLRRTGKSSIIKIGIN   51 (283)
T ss_dssp             EEEEEESTTSSHHHHHHHHHH
T ss_pred             EEEEEcCCCCcHHHHHHHHHH
Confidence            478899999999999988764

>d1okkd2 c.37.1.10 (D:97-303) GTPase domain of the signal recognition particle receptor FtsY {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal recognition particle receptor FtsY
species: Thermus aquaticus [TaxId: 271]

Probab=96.54  E-value=0.00087  Score=45.09  Aligned_cols=84  Identities=15%  Similarity=0.057  Sum_probs=46.5

Q ss_pred             EEEEEEeCCCccccccc----ccc--------CcCCCcEEEEEEeCCCch-hHHHHHHHHHHHHhhhCCCCCEEEEeeCC
Q 036449           54 VNLGLWDTAGQEDYNRL----RPL--------SYRGADVFILAFSLISKA-SYENVSKKWIPELKHYAPGVPIILVGTKL  120 (197)
Q Consensus        54 ~~~~i~D~~G~~~~~~~----~~~--------~~~~~~~~i~v~d~~~~~-s~~~~~~~~~~~i~~~~~~~~~ivv~nK~  120 (197)
                      ..+.++||+|-..+...    ...        .....+-.++|.|.+... ....+ ..+...+.      +--++.||.
T Consensus        89 ~d~ilIDTaGr~~~d~~l~~el~~~~~~~~~~~~~~p~~~~LVl~a~~~~~~~~~~-~~~~~~~~------~~~lI~TKl  161 (207)
T d1okkd2          89 YDLLFVDTAGRLHTKHNLMEELKKVKRAIAKADPEEPKEVWLVLDAVTGQNGLEQA-KKFHEAVG------LTGVIVTKL  161 (207)
T ss_dssp             CSEEEECCCCCCTTCHHHHHHHHHHHHHHHHHCTTCCSEEEEEEETTBCTHHHHHH-HHHHHHHC------CSEEEEECT
T ss_pred             CCEEEcCccccchhhHHHHHHHHHHHHHhhhcccCCCceEEEEeecccCchHHHHH-HHhhhccC------CceEEEecc
Confidence            34679999994332211    000        112457889999997654 33333 33333332      225679999


Q ss_pred             cccCCcccccCCCCCCcccHHHHHHHHHHhCCCceEEec
Q 036449          121 DLRDDKQFFIDHPGAVPISTAQGEELRKLIGAPAYIECS  159 (197)
Q Consensus       121 D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s  159 (197)
                      |....-.              .+...+...+. |+..++
T Consensus       162 Det~~~G--------------~~l~~~~~~~~-Pi~~i~  185 (207)
T d1okkd2         162 DGTAKGG--------------VLIPIVRTLKV-PIKFVG  185 (207)
T ss_dssp             TSSCCCT--------------THHHHHHHHCC-CEEEEE
T ss_pred             CCCCCcc--------------HHHHHHHHHCC-CEEEEe
Confidence            9865432              23455666776 655444

>d1uf9a_ c.37.1.1 (A:) Dephospho-CoA kinase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Dephospho-CoA kinase
species: Thermus thermophilus [TaxId: 274]

Probab=96.52  E-value=0.0012  Score=43.66  Aligned_cols=26  Identities=19%  Similarity=0.045  Sum_probs=21.6

Q ss_pred             ceeEEEEEcCCCCCHHHHHHHHhhCC
Q 036449            5 RFIKCVTVGDGAVGKTCLLISYTSNT   30 (197)
Q Consensus         5 ~~~~i~v~G~~~~GKstli~~~~~~~   30 (197)
                      .++-|.+.|.+||||||+.+.|....
T Consensus         2 ~p~IIgitG~~gSGKstva~~l~~~g   27 (191)
T d1uf9a_           2 HPIIIGITGNIGSGKSTVAALLRSWG   27 (191)
T ss_dssp             CCEEEEEEECTTSCHHHHHHHHHHTT
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHHCC
Confidence            45778999999999999998876543

>d1ofha_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: HslU
species: Haemophilus influenzae [TaxId: 727]

Probab=96.52  E-value=0.00072  Score=48.48  Aligned_cols=23  Identities=22%  Similarity=0.242  Sum_probs=19.9

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhhC
Q 036449            7 IKCVTVGDGAVGKTCLLISYTSN   29 (197)
Q Consensus         7 ~~i~v~G~~~~GKstli~~~~~~   29 (197)
                      -.|+++||+|+|||.|.+++...
T Consensus        50 ~~iLl~GPpG~GKT~lAkalA~~   72 (309)
T d1ofha_          50 KNILMIGPTGVGKTEIARRLAKL   72 (309)
T ss_dssp             CCEEEECCTTSSHHHHHHHHHHH
T ss_pred             ceEEEECCCCCCHHHHHHHHhhc
Confidence            45899999999999999887653

>d1gsia_ c.37.1.1 (A:) Thymidylate kinase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=96.47  E-value=0.00094  Score=44.67  Aligned_cols=22  Identities=18%  Similarity=0.237  Sum_probs=18.5

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhh
Q 036449            7 IKCVTVGDGAVGKTCLLISYTS   28 (197)
Q Consensus         7 ~~i~v~G~~~~GKstli~~~~~   28 (197)
                      +-|+|-|..||||||+++.|..
T Consensus         1 mlI~ieG~dGsGKST~~~~L~~   22 (208)
T d1gsia_           1 MLIAIEGVDGAGKRTLVEKLSG   22 (208)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHH
Confidence            3589999999999999977653

>d1sxja2 c.37.1.20 (A:295-547) Replication factor C1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.46  E-value=0.0011  Score=45.73  Aligned_cols=23  Identities=17%  Similarity=0.154  Sum_probs=20.4

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhhC
Q 036449            7 IKCVTVGDGAVGKTCLLISYTSN   29 (197)
Q Consensus         7 ~~i~v~G~~~~GKstli~~~~~~   29 (197)
                      -.+++.|++|+||||++..+...
T Consensus        53 ~~lll~GPpG~GKTt~a~~la~~   75 (253)
T d1sxja2          53 RAAMLYGPPGIGKTTAAHLVAQE   75 (253)
T ss_dssp             SEEEEECSTTSSHHHHHHHHHHH
T ss_pred             ceEEEECCCCCCHHHHHHHHHHH
Confidence            46999999999999999988764

>d1w5sa2 c.37.1.20 (A:7-293) CDC6-like protein APE0152, N-terminal domain {Aeropyrum pernix [TaxId: 56636]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CDC6-like protein APE0152, N-terminal domain
species: Aeropyrum pernix [TaxId: 56636]

Probab=96.45  E-value=0.001  Score=46.47  Aligned_cols=20  Identities=25%  Similarity=0.257  Sum_probs=16.5

Q ss_pred             EEEEcCCCCCHHHHHHHHhh
Q 036449            9 CVTVGDGAVGKTCLLISYTS   28 (197)
Q Consensus         9 i~v~G~~~~GKstli~~~~~   28 (197)
                      +++.|++|+|||++++.+..
T Consensus        49 l~l~GppGtGKT~l~~~l~~   68 (287)
T d1w5sa2          49 YGSIGRVGIGKTTLAKFTVK   68 (287)
T ss_dssp             EECTTCCSSSHHHHHHHHHH
T ss_pred             EEeECCCCCCHHHHHHHHHH
Confidence            34569999999999988764

>d1ckea_ c.37.1.1 (A:) CMP kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: CMP kinase
species: Escherichia coli [TaxId: 562]

Probab=96.43  E-value=0.00092  Score=45.12  Aligned_cols=21  Identities=19%  Similarity=0.175  Sum_probs=17.8

Q ss_pred             EEEEEcCCCCCHHHHHHHHhh
Q 036449            8 KCVTVGDGAVGKTCLLISYTS   28 (197)
Q Consensus         8 ~i~v~G~~~~GKstli~~~~~   28 (197)
                      =|++.|++||||+|+...+..
T Consensus         5 iI~I~GppGSGKgT~ak~La~   25 (225)
T d1ckea_           5 VITIDGPSGAGKGTLCKAMAE   25 (225)
T ss_dssp             EEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            577889999999999977764

>d1ls1a2 c.37.1.10 (A:89-295) GTPase domain of the signal sequence recognition protein Ffh {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal sequence recognition protein Ffh
species: Thermus aquaticus [TaxId: 271]

Probab=96.40  E-value=0.00095  Score=44.91  Aligned_cols=84  Identities=21%  Similarity=0.182  Sum_probs=45.9

Q ss_pred             EEEEEeCCCcccccc----cccc--CcCCCcEEEEEEeCCCchhHHHHHHHHHHHHhhhCCCCCEEEEeeCCcccCCccc
Q 036449           55 NLGLWDTAGQEDYNR----LRPL--SYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLRDDKQF  128 (197)
Q Consensus        55 ~~~i~D~~G~~~~~~----~~~~--~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~~~ivv~nK~D~~~~~~~  128 (197)
                      .+.++||+|-.....    .+..  ...+.+-+++|.|.+.+..-......+.+.+.      +--++.+|.|....-  
T Consensus        94 d~vlIDTaGr~~~d~~~~~el~~~~~~~~~~~~llv~~a~~~~~~~~~~~~f~~~~~------~~~~I~TKlDe~~~~--  165 (207)
T d1ls1a2          94 DLILVDTAGRLQIDEPLMGELARLKEVLGPDEVLLVLDAMTGQEALSVARAFDEKVG------VTGLVLTKLDGDARG--  165 (207)
T ss_dssp             CEEEEECCCCSSCCHHHHHHHHHHHHHHCCSEEEEEEEGGGTHHHHHHHHHHHHHTC------CCEEEEECGGGCSSC--
T ss_pred             cceeecccccchhhhhhHHHHHHHHhhcCCceEEEEeccccchhHHHHHHHHHhhCC------CCeeEEeecCccccc--
Confidence            467999999433221    1111  12356789999998766433222122222221      224778999975532  


Q ss_pred             ccCCCCCCcccHHHHHHHHHHhCCCceEEec
Q 036449          129 FIDHPGAVPISTAQGEELRKLIGAPAYIECS  159 (197)
Q Consensus       129 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s  159 (197)
                                  =.+...+...+. |+..++
T Consensus       166 ------------G~~l~~~~~~~~-Pi~~i~  183 (207)
T d1ls1a2         166 ------------GAALSARHVTGK-PIYFAG  183 (207)
T ss_dssp             ------------HHHHHHHHHHCC-CEEEEC
T ss_pred             ------------hHHHHHHHHHCC-CEEEEe
Confidence                        233556667776 554443

>d1sxjd2 c.37.1.20 (D:26-262) Replication factor C2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C2
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.30  E-value=0.0014  Score=44.63  Aligned_cols=23  Identities=22%  Similarity=0.332  Sum_probs=19.5

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHhh
Q 036449            6 FIKCVTVGDGAVGKTCLLISYTS   28 (197)
Q Consensus         6 ~~~i~v~G~~~~GKstli~~~~~   28 (197)
                      ..++++.|++|+||||+++.+..
T Consensus        33 ~~~lll~Gp~G~GKTtl~~~i~~   55 (237)
T d1sxjd2          33 LPHMLFYGPPGTGKTSTILALTK   55 (237)
T ss_dssp             CCCEEEECSTTSSHHHHHHHHHH
T ss_pred             CCeEEEECCCCCChHHHHHHHHH
Confidence            34589999999999999977764

>d1sq5a_ c.37.1.6 (A:) Pantothenate kinase PanK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Pantothenate kinase PanK
species: Escherichia coli [TaxId: 562]

Probab=96.30  E-value=0.0014  Score=46.85  Aligned_cols=24  Identities=21%  Similarity=0.040  Sum_probs=20.6

Q ss_pred             CceeEEEEEcCCCCCHHHHHHHHh
Q 036449            4 SRFIKCVTVGDGAVGKTCLLISYT   27 (197)
Q Consensus         4 ~~~~~i~v~G~~~~GKstli~~~~   27 (197)
                      ..++-|.|.|++||||||+.+.+.
T Consensus        78 k~P~iIGIaG~sgSGKSTla~~L~  101 (308)
T d1sq5a_          78 RIPYIISIAGSVAVGKSTTARVLQ  101 (308)
T ss_dssp             CCCEEEEEEECTTSSHHHHHHHHH
T ss_pred             CCCEEEEEeCCCCCCCcHHHHHHH
Confidence            456889999999999999987664

>d1g41a_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: HslU
species: Haemophilus influenzae [TaxId: 727]

Probab=96.29  E-value=0.001  Score=50.09  Aligned_cols=21  Identities=24%  Similarity=0.346  Sum_probs=18.9

Q ss_pred             EEEEEcCCCCCHHHHHHHHhh
Q 036449            8 KCVTVGDGAVGKTCLLISYTS   28 (197)
Q Consensus         8 ~i~v~G~~~~GKstli~~~~~   28 (197)
                      +|+++||+|||||-|.+++-.
T Consensus        51 NILliGPTGvGKTlLAr~LAk   71 (443)
T d1g41a_          51 NILMIGPTGVGKTEIARRLAK   71 (443)
T ss_dssp             CEEEECCTTSSHHHHHHHHHH
T ss_pred             cEEEECCCCCCHHHHHHHHHH
Confidence            799999999999999987754

>d1ixza_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: AAA domain of cell division protein FtsH
species: Thermus thermophilus [TaxId: 274]

Probab=96.27  E-value=0.0013  Score=45.56  Aligned_cols=22  Identities=32%  Similarity=0.370  Sum_probs=20.0

Q ss_pred             EEEEEcCCCCCHHHHHHHHhhC
Q 036449            8 KCVTVGDGAVGKTCLLISYTSN   29 (197)
Q Consensus         8 ~i~v~G~~~~GKstli~~~~~~   29 (197)
                      .|++.|++|+|||++++++.+.
T Consensus        44 giLl~GppGtGKT~la~aia~~   65 (247)
T d1ixza_          44 GVLLVGPPGVGKTHLARAVAGE   65 (247)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHH
T ss_pred             eEEEecCCCCChhHHHHHHHHH
Confidence            5999999999999999998863

>d1odfa_ c.37.1.6 (A:) Hypothetical protein Ygr205W {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Hypothetical protein Ygr205W
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.23  E-value=0.002  Score=45.49  Aligned_cols=23  Identities=17%  Similarity=0.066  Sum_probs=19.5

Q ss_pred             CceeEEEEEcCCCCCHHHHHHHH
Q 036449            4 SRFIKCVTVGDGAVGKTCLLISY   26 (197)
Q Consensus         4 ~~~~~i~v~G~~~~GKstli~~~   26 (197)
                      .+.+=|.+.|.+|||||||...+
T Consensus        25 ~~P~iIGi~G~qGSGKSTl~~~l   47 (286)
T d1odfa_          25 KCPLFIFFSGPQGSGKSFTSIQI   47 (286)
T ss_dssp             CSCEEEEEECCTTSSHHHHHHHH
T ss_pred             CCCEEEEeECCCCCCHHHHHHHH
Confidence            45688999999999999998655

>d1sxjb2 c.37.1.20 (B:7-230) Replication factor C4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.23  E-value=0.0015  Score=44.25  Aligned_cols=23  Identities=17%  Similarity=0.228  Sum_probs=19.3

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHhh
Q 036449            6 FIKCVTVGDGAVGKTCLLISYTS   28 (197)
Q Consensus         6 ~~~i~v~G~~~~GKstli~~~~~   28 (197)
                      ..++++.|++|+||||+++.+..
T Consensus        36 ~~~~ll~Gp~G~GKTt~a~~la~   58 (224)
T d1sxjb2          36 MPHMIISGMPGIGKTTSVHCLAH   58 (224)
T ss_dssp             CCCEEEECSTTSSHHHHHHHHHH
T ss_pred             CCeEEEECCCCCCchhhHHHHHH
Confidence            35689999999999999977653

>d1kkma_ c.91.1.2 (A:) HPr kinase HprK C-terminal domain {Lactobacillus casei [TaxId: 1582]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: HPr kinase HprK C-terminal domain
domain: HPr kinase HprK C-terminal domain
species: Lactobacillus casei [TaxId: 1582]

Probab=96.22  E-value=0.0018  Score=42.20  Aligned_cols=23  Identities=22%  Similarity=0.348  Sum_probs=20.4

Q ss_pred             EEEEEcCCCCCHHHHHHHHhhCC
Q 036449            8 KCVTVGDGAVGKTCLLISYTSNT   30 (197)
Q Consensus         8 ~i~v~G~~~~GKstli~~~~~~~   30 (197)
                      -|++.|++|+||||+.-.+....
T Consensus        16 gvl~~G~sG~GKStlal~l~~~g   38 (176)
T d1kkma_          16 GVLITGDSGVGKSETALELVQRG   38 (176)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHTT
T ss_pred             EEEEEeCCCCCHHHHHHHHHHcC
Confidence            48999999999999999888764

>d1sxjc2 c.37.1.20 (C:12-238) Replication factor C3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.17  E-value=0.0016  Score=44.16  Aligned_cols=24  Identities=17%  Similarity=0.296  Sum_probs=20.2

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHhhC
Q 036449            6 FIKCVTVGDGAVGKTCLLISYTSN   29 (197)
Q Consensus         6 ~~~i~v~G~~~~GKstli~~~~~~   29 (197)
                      ..++++.|++|+||||++..+...
T Consensus        35 ~~~lLl~Gp~G~GKttl~~~la~~   58 (227)
T d1sxjc2          35 LPHLLFYGPPGTGKTSTIVALARE   58 (227)
T ss_dssp             CCCEEEECSSSSSHHHHHHHHHHH
T ss_pred             CCeEEEECCCCCChhHHHHHHHHH
Confidence            346899999999999999888753

>d1qvra2 c.37.1.20 (A:149-535) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpB, AAA+ modules
species: Thermus thermophilus [TaxId: 274]

Probab=96.13  E-value=0.00099  Score=49.23  Aligned_cols=28  Identities=25%  Similarity=0.361  Sum_probs=20.8

Q ss_pred             ceeEEEEEcCCCCCHHHHHH----HHhhCCCC
Q 036449            5 RFIKCVTVGDGAVGKTCLLI----SYTSNTFP   32 (197)
Q Consensus         5 ~~~~i~v~G~~~~GKstli~----~~~~~~~~   32 (197)
                      +.=++++||++|||||+++.    ++..+..+
T Consensus        42 ~k~n~llvG~~GvGKtaiv~~la~~i~~~~vp   73 (387)
T d1qvra2          42 TKNNPVLIGEPGVGKTAIVEGLAQRIVKGDVP   73 (387)
T ss_dssp             SCCCCEEEECTTSCHHHHHHHHHHHHHHTCSC
T ss_pred             CCCCCeEECCCCCCHHHHHHHHHHHHHhCCCC
Confidence            34568999999999999994    44455443

>d1lv7a_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: AAA domain of cell division protein FtsH
species: Escherichia coli [TaxId: 562]

Probab=96.10  E-value=0.0018  Score=45.10  Aligned_cols=21  Identities=29%  Similarity=0.338  Sum_probs=19.1

Q ss_pred             EEEEEcCCCCCHHHHHHHHhh
Q 036449            8 KCVTVGDGAVGKTCLLISYTS   28 (197)
Q Consensus         8 ~i~v~G~~~~GKstli~~~~~   28 (197)
                      .+++.|++|+|||++++.+..
T Consensus        47 ~iLL~GppGtGKT~la~~iA~   67 (256)
T d1lv7a_          47 GVLMVGPPGTGKTLLAKAIAG   67 (256)
T ss_dssp             EEEEECCTTSCHHHHHHHHHH
T ss_pred             eEEeeCCCCCCccHHHHHHHH
Confidence            489999999999999988875

>d1knxa2 c.91.1.2 (A:133-309) HPr kinase HprK C-terminal domain {Mycoplasma pneumoniae [TaxId: 2104]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: HPr kinase HprK C-terminal domain
domain: HPr kinase HprK C-terminal domain
species: Mycoplasma pneumoniae [TaxId: 2104]

Probab=96.07  E-value=0.0021  Score=41.93  Aligned_cols=23  Identities=13%  Similarity=0.294  Sum_probs=20.3

Q ss_pred             EEEEEcCCCCCHHHHHHHHhhCC
Q 036449            8 KCVTVGDGAVGKTCLLISYTSNT   30 (197)
Q Consensus         8 ~i~v~G~~~~GKstli~~~~~~~   30 (197)
                      -|++.|++|+||||+...+....
T Consensus        17 gvli~G~sG~GKS~lal~l~~~G   39 (177)
T d1knxa2          17 GVLLTGRSGIGKSECALDLINKN   39 (177)
T ss_dssp             EEEEEESSSSSHHHHHHHHHTTT
T ss_pred             EEEEEcCCCCCHHHHHHHHHHcC
Confidence            48999999999999999988754

>d1e32a2 c.37.1.20 (A:201-458) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Membrane fusion ATPase VCP/p97
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.02  E-value=0.002  Score=44.82  Aligned_cols=22  Identities=18%  Similarity=0.220  Sum_probs=19.7

Q ss_pred             EEEEEcCCCCCHHHHHHHHhhC
Q 036449            8 KCVTVGDGAVGKTCLLISYTSN   29 (197)
Q Consensus         8 ~i~v~G~~~~GKstli~~~~~~   29 (197)
                      .|++.|++|+|||++++.+...
T Consensus        40 giLL~GppGtGKT~l~~ala~~   61 (258)
T d1e32a2          40 GILLYGPPGTGKTLIARAVANE   61 (258)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHH
T ss_pred             eeEEecCCCCCchHHHHHHHHH
Confidence            5999999999999999888764

>d4tmka_ c.37.1.1 (A:) Thymidylate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Escherichia coli [TaxId: 562]

Probab=95.97  E-value=0.002  Score=43.19  Aligned_cols=20  Identities=25%  Similarity=0.101  Sum_probs=17.3

Q ss_pred             EEEEcCCCCCHHHHHHHHhh
Q 036449            9 CVTVGDGAVGKTCLLISYTS   28 (197)
Q Consensus         9 i~v~G~~~~GKstli~~~~~   28 (197)
                      |++-|..||||||+++.+..
T Consensus         5 IviEG~dGsGKsT~~~~L~~   24 (210)
T d4tmka_           5 IVIEGLEGAGKTTARNVVVE   24 (210)
T ss_dssp             EEEEECTTSCHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHH
Confidence            78889999999999977653

>d1jjva_ c.37.1.1 (A:) Dephospho-CoA kinase {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Dephospho-CoA kinase
species: Haemophilus influenzae [TaxId: 727]

Probab=95.91  E-value=0.0041  Score=41.51  Aligned_cols=23  Identities=22%  Similarity=0.117  Sum_probs=19.5

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhhC
Q 036449            7 IKCVTVGDGAVGKTCLLISYTSN   29 (197)
Q Consensus         7 ~~i~v~G~~~~GKstli~~~~~~   29 (197)
                      +-|.+.|..||||||+.+.|...
T Consensus         3 ~iIgITG~igSGKStv~~~l~~~   25 (205)
T d1jjva_           3 YIVGLTGGIGSGKTTIANLFTDL   25 (205)
T ss_dssp             EEEEEECSTTSCHHHHHHHHHTT
T ss_pred             EEEEEECCCCCCHHHHHHHHHHC
Confidence            56889999999999999877543

>d1ko7a2 c.91.1.2 (A:130-298) HPr kinase HprK C-terminal domain {Staphylococcus xylosus [TaxId: 1288]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: HPr kinase HprK C-terminal domain
domain: HPr kinase HprK C-terminal domain
species: Staphylococcus xylosus [TaxId: 1288]

Probab=95.89  E-value=0.0029  Score=40.95  Aligned_cols=25  Identities=16%  Similarity=0.347  Sum_probs=21.2

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhhCCC
Q 036449            7 IKCVTVGDGAVGKTCLLISYTSNTF   31 (197)
Q Consensus         7 ~~i~v~G~~~~GKstli~~~~~~~~   31 (197)
                      .-|++.|++|+||||+.-.+.....
T Consensus        16 ~gvli~G~sg~GKS~la~~l~~~g~   40 (169)
T d1ko7a2          16 VGVLITGDSGIGKSETALELIKRGH   40 (169)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHTTC
T ss_pred             EEEEEEeCCCCCHHHHHHHHHHcCC
Confidence            3589999999999999988887643

>d1nn5a_ c.37.1.1 (A:) Thymidylate kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.82  E-value=0.0025  Score=42.81  Aligned_cols=20  Identities=20%  Similarity=0.126  Sum_probs=16.7

Q ss_pred             EEEEcCCCCCHHHHHHHHhh
Q 036449            9 CVTVGDGAVGKTCLLISYTS   28 (197)
Q Consensus         9 i~v~G~~~~GKstli~~~~~   28 (197)
                      |++-|..||||||+++.+..
T Consensus         6 I~ieG~dGsGKsT~~~~L~~   25 (209)
T d1nn5a_           6 IVLEGVDRAGKSTQSRKLVE   25 (209)
T ss_dssp             EEEEESTTSSHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHH
Confidence            78889999999998866543

>d1p5zb_ c.37.1.1 (B:) Deoxycytidine kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxycytidine kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.79  E-value=0.0018  Score=44.19  Aligned_cols=21  Identities=24%  Similarity=0.251  Sum_probs=18.6

Q ss_pred             EEEEEcCCCCCHHHHHHHHhh
Q 036449            8 KCVTVGDGAVGKTCLLISYTS   28 (197)
Q Consensus         8 ~i~v~G~~~~GKstli~~~~~   28 (197)
                      .|+|-|..||||||+++.|..
T Consensus         4 ~I~ieG~dGsGKST~~~~L~~   24 (241)
T d1p5zb_           4 KISIEGNIAAGKSTFVNILKQ   24 (241)
T ss_dssp             EEEEECSTTSSHHHHHTTTGG
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            589999999999999987665

>d1a7ja_ c.37.1.6 (A:) Phosphoribulokinase {Rhodobacter sphaeroides [TaxId: 1063]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Phosphoribulokinase
species: Rhodobacter sphaeroides [TaxId: 1063]

Probab=95.73  E-value=0.0017  Score=45.78  Aligned_cols=23  Identities=9%  Similarity=0.229  Sum_probs=16.3

Q ss_pred             ceeEEEEEcCCCCCHHHHHHHHh
Q 036449            5 RFIKCVTVGDGAVGKTCLLISYT   27 (197)
Q Consensus         5 ~~~~i~v~G~~~~GKstli~~~~   27 (197)
                      +..=|.|.|.+||||||+.++|.
T Consensus         3 k~pIIgIaG~SGSGKTTva~~l~   25 (288)
T d1a7ja_           3 KHPIISVTGSSGAGTSTVKHTFD   25 (288)
T ss_dssp             TSCEEEEESCC---CCTHHHHHH
T ss_pred             CCCEEEEECCCCCcHHHHHHHHH
Confidence            44459999999999999997664

>d1g8pa_ c.37.1.20 (A:) ATPase subunit of magnesium chelatase, BchI {Rhodobacter capsulatus [TaxId: 1061]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ATPase subunit of magnesium chelatase, BchI
species: Rhodobacter capsulatus [TaxId: 1061]

Probab=95.73  E-value=0.0014  Score=47.36  Aligned_cols=20  Identities=20%  Similarity=0.373  Sum_probs=18.5

Q ss_pred             EEEEEcCCCCCHHHHHHHHh
Q 036449            8 KCVTVGDGAVGKTCLLISYT   27 (197)
Q Consensus         8 ~i~v~G~~~~GKstli~~~~   27 (197)
                      +|++.|++|+|||+|++++.
T Consensus        30 ~vLl~G~pG~GKT~lar~~~   49 (333)
T d1g8pa_          30 GVLVFGDRGTGKSTAVRALA   49 (333)
T ss_dssp             CEEEECCGGGCTTHHHHHHH
T ss_pred             eEEEECCCCccHHHHHHHHH
Confidence            69999999999999998875

>d1r7ra3 c.37.1.20 (A:471-735) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Membrane fusion ATPase VCP/p97
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.68  E-value=0.0029  Score=44.17  Aligned_cols=23  Identities=22%  Similarity=0.210  Sum_probs=20.2

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhhC
Q 036449            7 IKCVTVGDGAVGKTCLLISYTSN   29 (197)
Q Consensus         7 ~~i~v~G~~~~GKstli~~~~~~   29 (197)
                      -.|++.|++|+|||+|++++...
T Consensus        42 ~giLL~Gp~GtGKT~l~~ala~~   64 (265)
T d1r7ra3          42 KGVLFYGPPGCGKTLLAKAIANE   64 (265)
T ss_dssp             CEEEEBCCTTSSHHHHHHHHHHH
T ss_pred             CeEEEECCCCCcchhHHHHHHHH
Confidence            35999999999999999998764

>d1n0wa_ c.37.1.11 (A:) DNA repair protein Rad51, catalytic domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.61  E-value=0.0037  Score=41.63  Aligned_cols=24  Identities=17%  Similarity=0.086  Sum_probs=19.8

Q ss_pred             EEEEEcCCCCCHHHHHHHHhhCCC
Q 036449            8 KCVTVGDGAVGKTCLLISYTSNTF   31 (197)
Q Consensus         8 ~i~v~G~~~~GKstli~~~~~~~~   31 (197)
                      -+.+.|++|+|||+|...+..+..
T Consensus        25 v~~i~G~~GsGKT~l~l~la~~~~   48 (242)
T d1n0wa_          25 ITEMFGEFRTGKTQICHTLAVTCQ   48 (242)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHTT
T ss_pred             EEEEEeCCCCCHHHHHHHHHHHHH
Confidence            378999999999999988875543

>d1e2ka_ c.37.1.1 (A:) Thymidine kinase {Herpes simplex virus type 1, different strains [TaxId: 10298]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidine kinase
species: Herpes simplex virus type 1, different strains [TaxId: 10298]

Probab=95.55  E-value=0.0039  Score=44.84  Aligned_cols=24  Identities=17%  Similarity=0.218  Sum_probs=21.5

Q ss_pred             ceeEEEEEcCCCCCHHHHHHHHhh
Q 036449            5 RFIKCVTVGDGAVGKTCLLISYTS   28 (197)
Q Consensus         5 ~~~~i~v~G~~~~GKstli~~~~~   28 (197)
                      ..++|.|=|.-|+||||+++.+..
T Consensus         3 ~~lrI~IEG~iGsGKTTl~~~La~   26 (329)
T d1e2ka_           3 TLLRVYIDGPHGMGKTTTTQLLVA   26 (329)
T ss_dssp             EEEEEEECSCTTSSHHHHHHHHTC
T ss_pred             CceEEEEECCcCCCHHHHHHHHHH
Confidence            568899999999999999988864

>d1osna_ c.37.1.1 (A:) Thymidine kinase {Varicella-zoster virus [TaxId: 10335]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidine kinase
species: Varicella-zoster virus [TaxId: 10335]

Probab=95.53  E-value=0.0031  Score=45.44  Aligned_cols=25  Identities=16%  Similarity=0.213  Sum_probs=22.4

Q ss_pred             ceeEEEEEcCCCCCHHHHHHHHhhC
Q 036449            5 RFIKCVTVGDGAVGKTCLLISYTSN   29 (197)
Q Consensus         5 ~~~~i~v~G~~~~GKstli~~~~~~   29 (197)
                      +.++|.|=|..|+||||+++.+...
T Consensus         4 ~~lrI~IEG~iGsGKSTl~~~L~~~   28 (331)
T d1osna_           4 GVLRIYLDGAYGIGKTTAAEEFLHH   28 (331)
T ss_dssp             EEEEEEEEESSSSCTTHHHHHHHHT
T ss_pred             cceEEEEECCCCCCHHHHHHHHHHH
Confidence            5689999999999999999988764

>d1um8a_ c.37.1.20 (A:) ClpX {Helicobacter pylori [TaxId: 210]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpX
species: Helicobacter pylori [TaxId: 210]

Probab=95.53  E-value=0.0043  Score=45.36  Aligned_cols=24  Identities=17%  Similarity=0.210  Sum_probs=20.2

Q ss_pred             ceeEEEEEcCCCCCHHHHHHHHhh
Q 036449            5 RFIKCVTVGDGAVGKTCLLISYTS   28 (197)
Q Consensus         5 ~~~~i~v~G~~~~GKstli~~~~~   28 (197)
                      +.=+++++||+|||||-|.+++..
T Consensus        67 p~~niLfiGPTGvGKTElAk~LA~   90 (364)
T d1um8a_          67 SKSNILLIGPTGSGKTLMAQTLAK   90 (364)
T ss_dssp             CCCCEEEECCTTSSHHHHHHHHHH
T ss_pred             CCcceeeeCCCCccHHHHHHHHHh
Confidence            345699999999999999988754

>d2a5yb3 c.37.1.20 (B:109-385) CED-4, NB-ARC domain {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CED-4, NB-ARC domain
species: Caenorhabditis elegans [TaxId: 6239]

Probab=95.51  E-value=0.0045  Score=43.42  Aligned_cols=24  Identities=17%  Similarity=0.104  Sum_probs=20.0

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHhhC
Q 036449            6 FIKCVTVGDGAVGKTCLLISYTSN   29 (197)
Q Consensus         6 ~~~i~v~G~~~~GKstli~~~~~~   29 (197)
                      .--|.+.|..|+|||||...+.+.
T Consensus        44 ~~~v~I~GmgGiGKTtLA~~v~~~   67 (277)
T d2a5yb3          44 SFFLFLHGRAGSGKSVIASQALSK   67 (277)
T ss_dssp             SEEEEEECSTTSSHHHHHHHHHHH
T ss_pred             ceEEEEECCCCCCHHHHHHHHHHh
Confidence            345789999999999999887653

>d1vhta_ c.37.1.1 (A:) Dephospho-CoA kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Dephospho-CoA kinase
species: Escherichia coli [TaxId: 562]

Probab=95.50  E-value=0.0062  Score=40.72  Aligned_cols=25  Identities=12%  Similarity=0.142  Sum_probs=20.3

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhhCCC
Q 036449            7 IKCVTVGDGAVGKTCLLISYTSNTF   31 (197)
Q Consensus         7 ~~i~v~G~~~~GKstli~~~~~~~~   31 (197)
                      +-|.+.|..||||||+.+.|....+
T Consensus         4 ~iIgitG~igSGKStv~~~l~~~G~   28 (208)
T d1vhta_           4 YIVALTGGIGSGKSTVANAFADLGI   28 (208)
T ss_dssp             EEEEEECCTTSCHHHHHHHHHHTTC
T ss_pred             EEEEEECCCcCCHHHHHHHHHHCCC
Confidence            4478999999999999987765443

>d1p6xa_ c.37.1.1 (A:) Thymidine kinase {Equine herpesvirus type 4 [TaxId: 10331]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidine kinase
species: Equine herpesvirus type 4 [TaxId: 10331]

Probab=95.49  E-value=0.0048  Score=44.46  Aligned_cols=26  Identities=15%  Similarity=0.086  Sum_probs=22.6

Q ss_pred             CceeEEEEEcCCCCCHHHHHHHHhhC
Q 036449            4 SRFIKCVTVGDGAVGKTCLLISYTSN   29 (197)
Q Consensus         4 ~~~~~i~v~G~~~~GKstli~~~~~~   29 (197)
                      .+.++|.|=|.-|+||||+++.+...
T Consensus         4 ~~~~rI~iEG~iGsGKSTl~~~L~~~   29 (333)
T d1p6xa_           4 VTIVRIYLDGVYGIGKSTTGRVMASA   29 (333)
T ss_dssp             EEEEEEEEECSTTSSHHHHHHHHHSG
T ss_pred             CceEEEEEECCccCCHHHHHHHHHHH
Confidence            35789999999999999999887753

>d1szpa2 c.37.1.11 (A:145-395) DNA repair protein Rad51, catalytic domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.45  E-value=0.0041  Score=42.26  Aligned_cols=23  Identities=17%  Similarity=0.120  Sum_probs=19.5

Q ss_pred             EEEEEcCCCCCHHHHHHHHhhCC
Q 036449            8 KCVTVGDGAVGKTCLLISYTSNT   30 (197)
Q Consensus         8 ~i~v~G~~~~GKstli~~~~~~~   30 (197)
                      -+++.|++|+|||+|...+..+.
T Consensus        36 ~~li~G~pGsGKT~l~lq~~~~~   58 (251)
T d1szpa2          36 ITELFGEFRTGKSQLCHTLAVTC   58 (251)
T ss_dssp             EEEEEESTTSSHHHHHHHHTTTT
T ss_pred             EEEEEcCCCCCHHHHHHHHHHHh
Confidence            37899999999999998887554

>d1r6bx3 c.37.1.20 (X:437-751) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpA, an Hsp100 chaperone, AAA+ modules
species: Escherichia coli [TaxId: 562]

Probab=95.40  E-value=0.0061  Score=43.61  Aligned_cols=21  Identities=24%  Similarity=0.357  Sum_probs=18.3

Q ss_pred             EEEEEcCCCCCHHHHHHHHhh
Q 036449            8 KCVTVGDGAVGKTCLLISYTS   28 (197)
Q Consensus         8 ~i~v~G~~~~GKstli~~~~~   28 (197)
                      .++++|++|+|||.|.+.+..
T Consensus        54 ~~lf~Gp~GvGKT~lak~la~   74 (315)
T d1r6bx3          54 SFLFAGPTGVGKTEVTVQLSK   74 (315)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCcchhHHHHHHHHh
Confidence            689999999999999977653

>d2ocpa1 c.37.1.1 (A:37-277) Deoxyguanosine kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxyguanosine kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.33  E-value=0.0048  Score=42.07  Aligned_cols=21  Identities=29%  Similarity=0.332  Sum_probs=18.7

Q ss_pred             EEEEEcCCCCCHHHHHHHHhh
Q 036449            8 KCVTVGDGAVGKTCLLISYTS   28 (197)
Q Consensus         8 ~i~v~G~~~~GKstli~~~~~   28 (197)
                      -|+|=|..||||||+++.+..
T Consensus         4 ~IviEG~~GsGKST~~~~L~~   24 (241)
T d2ocpa1           4 RLSIEGNIAVGKSTFVKLLTK   24 (241)
T ss_dssp             EEEEEECTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCcHHHHHHHHHH
Confidence            588999999999999988865

>d1pzna2 c.37.1.11 (A:96-349) DNA repair protein Rad51, catalytic domain {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=95.31  E-value=0.0047  Score=42.24  Aligned_cols=23  Identities=22%  Similarity=0.127  Sum_probs=19.4

Q ss_pred             EEEEEcCCCCCHHHHHHHHhhCC
Q 036449            8 KCVTVGDGAVGKTCLLISYTSNT   30 (197)
Q Consensus         8 ~i~v~G~~~~GKstli~~~~~~~   30 (197)
                      -++|.|++|+|||+|...+..+.
T Consensus        38 ~~li~G~pGsGKT~~~lq~~~~~   60 (254)
T d1pzna2          38 ITEVFGEFGSGKTQLAHTLAVMV   60 (254)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHHT
T ss_pred             EEEEEcCCCCCHHHHHHHHHHHh
Confidence            37899999999999998877543

>d1qhla_ c.37.1.12 (A:) Cell division protein MukB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Cell division protein MukB
species: Escherichia coli [TaxId: 562]

Probab=95.27  E-value=0.00088  Score=44.39  Aligned_cols=18  Identities=17%  Similarity=0.429  Sum_probs=15.9

Q ss_pred             EEEcCCCCCHHHHHHHHh
Q 036449           10 VTVGDGAVGKTCLLISYT   27 (197)
Q Consensus        10 ~v~G~~~~GKstli~~~~   27 (197)
                      +++|+.|+|||||+.++.
T Consensus        28 vi~G~NGsGKStil~Ai~   45 (222)
T d1qhla_          28 TLSGGNGAGKSTTMAAFV   45 (222)
T ss_dssp             HHHSCCSHHHHHHHHHHH
T ss_pred             EEECCCCCCHHHHHHHHH
Confidence            578999999999998875

>d1p9ra_ c.37.1.11 (A:) Extracellular secretion NTPase EpsE {Vibrio cholerae [TaxId: 666]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Extracellular secretion NTPase EpsE
species: Vibrio cholerae [TaxId: 666]

Probab=95.08  E-value=0.0064  Score=45.04  Aligned_cols=21  Identities=19%  Similarity=0.235  Sum_probs=19.1

Q ss_pred             EEEEcCCCCCHHHHHHHHhhC
Q 036449            9 CVTVGDGAVGKTCLLISYTSN   29 (197)
Q Consensus         9 i~v~G~~~~GKstli~~~~~~   29 (197)
                      |+|.|+.||||||.+..++..
T Consensus       161 iLvtGpTGSGKSTTl~~~l~~  181 (401)
T d1p9ra_         161 ILVTGPTGSGKSTTLYAGLQE  181 (401)
T ss_dssp             EEEECSTTSCHHHHHHHHHHH
T ss_pred             EEEEcCCCCCccHHHHHHhhh
Confidence            899999999999999888764

>d1e69a_ c.37.1.12 (A:) Smc head domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Smc head domain
species: Thermotoga maritima [TaxId: 2336]

Probab=95.00  E-value=0.0045  Score=43.81  Aligned_cols=18  Identities=22%  Similarity=0.381  Sum_probs=16.1

Q ss_pred             EEEcCCCCCHHHHHHHHh
Q 036449           10 VTVGDGAVGKTCLLISYT   27 (197)
Q Consensus        10 ~v~G~~~~GKstli~~~~   27 (197)
                      +++|+-|+||||++.++.
T Consensus        28 vlvG~NgsGKS~iL~Ai~   45 (308)
T d1e69a_          28 AIVGPNGSGKSNIIDAIK   45 (308)
T ss_dssp             EEECCTTTCSTHHHHHHH
T ss_pred             EEECCCCCcHHHHHHHHH
Confidence            789999999999998773

>d1svma_ c.37.1.20 (A:) Papillomavirus large T antigen helicase domain {Simian virus 40 [TaxId: 10633]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Papillomavirus large T antigen helicase domain
species: Simian virus 40 [TaxId: 10633]

Probab=94.93  E-value=0.0092  Score=43.52  Aligned_cols=22  Identities=23%  Similarity=0.098  Sum_probs=19.3

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhh
Q 036449            7 IKCVTVGDGAVGKTCLLISYTS   28 (197)
Q Consensus         7 ~~i~v~G~~~~GKstli~~~~~   28 (197)
                      -.+++.|+||+|||++..++.+
T Consensus       155 ~~~~~~g~~~~gk~~~~~~~~~  176 (362)
T d1svma_         155 RYWLFKGPIDSGKTTLAAALLE  176 (362)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHH
T ss_pred             CeEEEECCCCCCHHHHHHHHHH
Confidence            4689999999999999988764

>d1tmka_ c.37.1.1 (A:) Thymidylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=94.93  E-value=0.0075  Score=40.54  Aligned_cols=21  Identities=19%  Similarity=0.011  Sum_probs=18.0

Q ss_pred             EEEEEcCCCCCHHHHHHHHhh
Q 036449            8 KCVTVGDGAVGKTCLLISYTS   28 (197)
Q Consensus         8 ~i~v~G~~~~GKstli~~~~~   28 (197)
                      =|++-|..||||||+++.+..
T Consensus         5 ~I~iEG~DGsGKST~~~~L~~   25 (214)
T d1tmka_           5 LILIEGLDRTGKTTQCNILYK   25 (214)
T ss_dssp             EEEEEESTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCcHHHHHHHHHH
Confidence            388999999999999977753

>d1tf7a2 c.37.1.11 (A:256-497) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Circadian clock protein KaiC
species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]

Probab=94.89  E-value=0.0076  Score=40.98  Aligned_cols=22  Identities=27%  Similarity=0.434  Sum_probs=18.9

Q ss_pred             EEEEEcCCCCCHHHHHHHHhhC
Q 036449            8 KCVTVGDGAVGKTCLLISYTSN   29 (197)
Q Consensus         8 ~i~v~G~~~~GKstli~~~~~~   29 (197)
                      -+++.|++|+|||+|+..+..+
T Consensus        28 l~li~G~pGsGKT~l~~qia~~   49 (242)
T d1tf7a2          28 IILATGATGTGKTLLVSRFVEN   49 (242)
T ss_dssp             EEEEEECTTSSHHHHHHHHHHH
T ss_pred             EEEEEeCCCCCHHHHHHHHHHH
Confidence            4789999999999999777654

>d1l8qa2 c.37.1.20 (A:77-289) Chromosomal replication initiation factor DnaA {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Chromosomal replication initiation factor DnaA
species: Aquifex aeolicus [TaxId: 63363]

Probab=94.85  E-value=0.0088  Score=40.20  Aligned_cols=21  Identities=29%  Similarity=0.292  Sum_probs=18.6

Q ss_pred             EEEEcCCCCCHHHHHHHHhhC
Q 036449            9 CVTVGDGAVGKTCLLISYTSN   29 (197)
Q Consensus         9 i~v~G~~~~GKstli~~~~~~   29 (197)
                      +.+.|++|+|||.|++++...
T Consensus        39 l~l~G~~G~GKTHLl~A~~~~   59 (213)
T d1l8qa2          39 IFIYGSVGTGKTHLLQAAGNE   59 (213)
T ss_dssp             EEEECSSSSSHHHHHHHHHHH
T ss_pred             EEEECCCCCcHHHHHHHHHHH
Confidence            789999999999999887654

>d1v5wa_ c.37.1.11 (A:) Meiotic recombination protein DMC1/LIM15 homolog {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Meiotic recombination protein DMC1/LIM15 homolog
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.67  E-value=0.01  Score=40.42  Aligned_cols=22  Identities=23%  Similarity=0.151  Sum_probs=19.2

Q ss_pred             EEEEEcCCCCCHHHHHHHHhhC
Q 036449            8 KCVTVGDGAVGKTCLLISYTSN   29 (197)
Q Consensus         8 ~i~v~G~~~~GKstli~~~~~~   29 (197)
                      -++|.|++|+|||+|...+..+
T Consensus        39 ~~~i~G~~GsGKT~lalq~~~~   60 (258)
T d1v5wa_          39 ITEAFGEFRTGKTQLSHTLCVT   60 (258)
T ss_dssp             EEEEECCTTCTHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            4789999999999999888754

>d2i1qa2 c.37.1.11 (A:65-322) DNA repair protein Rad51, catalytic domain {Archaeon Methanococcus voltae [TaxId: 2188]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Archaeon Methanococcus voltae [TaxId: 2188]

Probab=94.64  E-value=0.0094  Score=40.44  Aligned_cols=23  Identities=22%  Similarity=0.066  Sum_probs=19.3

Q ss_pred             EEEEEcCCCCCHHHHHHHHhhCC
Q 036449            8 KCVTVGDGAVGKTCLLISYTSNT   30 (197)
Q Consensus         8 ~i~v~G~~~~GKstli~~~~~~~   30 (197)
                      -++|.|++|+|||+|...+..+.
T Consensus        36 l~~i~G~~G~GKT~~~l~~a~~~   58 (258)
T d2i1qa2          36 VTEFAGVFGSGKTQIMHQSCVNL   58 (258)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHHT
T ss_pred             EEEEEeCCCCCHHHHHHHHHHHH
Confidence            37899999999999998877543

>d1w44a_ c.37.1.11 (A:) NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: NTPase P4
species: Bacteriophage phi-12 [TaxId: 161736]

Probab=94.61  E-value=0.011  Score=42.33  Aligned_cols=20  Identities=30%  Similarity=0.476  Sum_probs=16.7

Q ss_pred             EEEEcCCCCCHHHHHHHHhh
Q 036449            9 CVTVGDGAVGKTCLLISYTS   28 (197)
Q Consensus         9 i~v~G~~~~GKstli~~~~~   28 (197)
                      +++.|+||+|||.|.+.+-.
T Consensus       126 ~l~~G~pG~GKT~la~ala~  145 (321)
T d1w44a_         126 VIVTGKGNSGKTPLVHALGE  145 (321)
T ss_dssp             EEEECSSSSCHHHHHHHHHH
T ss_pred             EEEECCCCccHHHHHHHHHH
Confidence            45579999999999988764

>d1a5ta2 c.37.1.20 (A:1-207) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: delta prime subunit of DNA polymerase III, N-domain
species: Escherichia coli [TaxId: 562]

Probab=94.60  E-value=0.012  Score=39.36  Aligned_cols=20  Identities=10%  Similarity=0.190  Sum_probs=17.8

Q ss_pred             EEEEcCCCCCHHHHHHHHhh
Q 036449            9 CVTVGDGAVGKTCLLISYTS   28 (197)
Q Consensus         9 i~v~G~~~~GKstli~~~~~   28 (197)
                      +++.|++|+||||++..+..
T Consensus        27 lLl~Gp~G~GKtt~a~~~a~   46 (207)
T d1a5ta2          27 LLIQALPGMGDDALIYALSR   46 (207)
T ss_dssp             EEEECCTTSCHHHHHHHHHH
T ss_pred             EEEECCCCCcHHHHHHHHHH
Confidence            89999999999999976654

>d1e9ra_ c.37.1.11 (A:) Bacterial conjugative coupling protein TrwB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Bacterial conjugative coupling protein TrwB
species: Escherichia coli [TaxId: 562]

Probab=94.49  E-value=0.0095  Score=44.26  Aligned_cols=23  Identities=22%  Similarity=0.267  Sum_probs=19.1

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhhC
Q 036449            7 IKCVTVGDGAVGKTCLLISYTSN   29 (197)
Q Consensus         7 ~~i~v~G~~~~GKstli~~~~~~   29 (197)
                      -+++|+|.+|+|||+++..+...
T Consensus        51 ~H~~I~G~tGsGKT~~l~~li~~   73 (433)
T d1e9ra_          51 RHLLVNGATGTGKSVLLRELAYT   73 (433)
T ss_dssp             GCEEEEECTTSSHHHHHHHHHHH
T ss_pred             ceEEEEeCCCCcHHHHHHHHHHH
Confidence            46999999999999998766543

>d1w1wa_ c.37.1.12 (A:) Smc head domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Smc head domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=94.48  E-value=0.0095  Score=43.89  Aligned_cols=19  Identities=16%  Similarity=0.352  Sum_probs=16.3

Q ss_pred             EEEEcCCCCCHHHHHHHHh
Q 036449            9 CVTVGDGAVGKTCLLISYT   27 (197)
Q Consensus         9 i~v~G~~~~GKstli~~~~   27 (197)
                      -+++|+.|+|||+++.++.
T Consensus        28 ~~i~G~NGsGKS~ileAi~   46 (427)
T d1w1wa_          28 TSIIGPNGSGKSNMMDAIS   46 (427)
T ss_dssp             EEEECSTTSSHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHH
Confidence            3588999999999998873

>d1njfa_ c.37.1.20 (A:) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: delta prime subunit of DNA polymerase III, N-domain
species: Escherichia coli [TaxId: 562]

Probab=94.23  E-value=0.015  Score=39.64  Aligned_cols=19  Identities=26%  Similarity=0.312  Sum_probs=16.8

Q ss_pred             EEEEcCCCCCHHHHHHHHh
Q 036449            9 CVTVGDGAVGKTCLLISYT   27 (197)
Q Consensus         9 i~v~G~~~~GKstli~~~~   27 (197)
                      +++-|++|+||||+++.+.
T Consensus        37 ~Ll~Gp~G~GKtt~a~~~~   55 (239)
T d1njfa_          37 YLFSGTRGVGKTSIARLLA   55 (239)
T ss_dssp             EEEECSTTSSHHHHHHHHH
T ss_pred             EEEECCCCCcHHHHHHHHH
Confidence            7889999999999997664

>d1cr2a_ c.37.1.11 (A:) Gene 4 protein (g4p, DNA primase), helicase domain {Bacteriophage T7 [TaxId: 10760]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Gene 4 protein (g4p, DNA primase), helicase domain
species: Bacteriophage T7 [TaxId: 10760]

Probab=94.08  E-value=0.016  Score=40.27  Aligned_cols=20  Identities=10%  Similarity=0.213  Sum_probs=16.9

Q ss_pred             EEEEcCCCCCHHHHHHHHhh
Q 036449            9 CVTVGDGAVGKTCLLISYTS   28 (197)
Q Consensus         9 i~v~G~~~~GKstli~~~~~   28 (197)
                      +++.|.+|+|||+|+..+..
T Consensus        38 ~vi~G~~G~GKT~~~~~la~   57 (277)
T d1cr2a_          38 IMVTSGSGMGKSTFVRQQAL   57 (277)
T ss_dssp             EEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEeCCCCCHHHHHHHHHH
Confidence            68999999999999866653

>d1tf7a1 c.37.1.11 (A:14-255) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Circadian clock protein KaiC
species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]

Probab=94.03  E-value=0.015  Score=39.02  Aligned_cols=20  Identities=25%  Similarity=0.444  Sum_probs=16.7

Q ss_pred             EEEEEcCCCCCHHHHHHHHh
Q 036449            8 KCVTVGDGAVGKTCLLISYT   27 (197)
Q Consensus         8 ~i~v~G~~~~GKstli~~~~   27 (197)
                      -+++.|++|+|||+|...+.
T Consensus        28 ~~~I~G~~G~GKT~la~~~~   47 (242)
T d1tf7a1          28 STLVSGTSGTGKTLFSIQFL   47 (242)
T ss_dssp             EEEEEESTTSSHHHHHHHHH
T ss_pred             EEEEEeCCCCCHHHHHHHHH
Confidence            47889999999999986554

>d1qvra3 c.37.1.20 (A:536-850) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpB, AAA+ modules
species: Thermus thermophilus [TaxId: 274]

Probab=94.02  E-value=0.018  Score=41.03  Aligned_cols=20  Identities=30%  Similarity=0.360  Sum_probs=17.1

Q ss_pred             EEEEEcCCCCCHHHHHHHHh
Q 036449            8 KCVTVGDGAVGKTCLLISYT   27 (197)
Q Consensus         8 ~i~v~G~~~~GKstli~~~~   27 (197)
                      .++++|++|+|||.+.+.+.
T Consensus        55 ~~lf~Gp~G~GKt~lak~la   74 (315)
T d1qvra3          55 SFLFLGPTGVGKTELAKTLA   74 (315)
T ss_dssp             EEEEBSCSSSSHHHHHHHHH
T ss_pred             EEEEECCCcchHHHHHHHHH
Confidence            57889999999999997654

>d1uaaa1 c.37.1.19 (A:2-307) DEXX box DNA helicase {Escherichia coli, RepD [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: DEXX box DNA helicase
species: Escherichia coli, RepD [TaxId: 562]

Probab=93.90  E-value=0.012  Score=41.44  Aligned_cols=15  Identities=27%  Similarity=0.676  Sum_probs=13.3

Q ss_pred             EEEEcCCCCCHHHHH
Q 036449            9 CVTVGDGAVGKTCLL   23 (197)
Q Consensus         9 i~v~G~~~~GKstli   23 (197)
                      ++|.|.+|+||||.+
T Consensus        17 ~lI~g~aGTGKTt~l   31 (306)
T d1uaaa1          17 CLVLAGAGSGKTRVI   31 (306)
T ss_dssp             EEECCCTTSCHHHHH
T ss_pred             EEEEeeCCccHHHHH
Confidence            688999999999765

>d1pjra1 c.37.1.19 (A:1-318) DEXX box DNA helicase {Bacillus stearothermophilus, PcrA [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: DEXX box DNA helicase
species: Bacillus stearothermophilus, PcrA [TaxId: 1422]

Probab=93.86  E-value=0.013  Score=41.54  Aligned_cols=15  Identities=27%  Similarity=0.397  Sum_probs=13.5

Q ss_pred             EEEEcCCCCCHHHHH
Q 036449            9 CVTVGDGAVGKTCLL   23 (197)
Q Consensus         9 i~v~G~~~~GKstli   23 (197)
                      ++|.|.+|+||||.+
T Consensus        27 ~lV~g~aGSGKTt~l   41 (318)
T d1pjra1          27 LLIMAGAGSGKTRVL   41 (318)
T ss_dssp             EEEEECTTSCHHHHH
T ss_pred             EEEEecCCccHHHHH
Confidence            789999999999766

>d7mdha1 c.2.1.5 (A:23-197) Malate dehydrogenase {Sorghum (Sorghum vulgare), chloroplast [TaxId: 4558]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Sorghum (Sorghum vulgare), chloroplast [TaxId: 4558]

Probab=93.54  E-value=0.11  Score=33.49  Aligned_cols=102  Identities=14%  Similarity=0.122  Sum_probs=58.0

Q ss_pred             CceeEEEEEcC-CCCCHHHHHHHHhhCCCCCCCCCceeeeeeEEEEECCeEEEEEEEeCCCcccc---------------
Q 036449            4 SRFIKCVTVGD-GAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQEDY---------------   67 (197)
Q Consensus         4 ~~~~~i~v~G~-~~~GKstli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~---------------   67 (197)
                      ++.+||+|+|. .++| ++|+..+..+..-...                ..+.+.+.|.+.....               
T Consensus        22 k~~~kV~I~GA~G~Ig-~~l~~~La~g~v~g~~----------------~~i~L~L~di~~~~~~l~g~~mdl~d~a~~~   84 (175)
T d7mdha1          22 KKLVNIAVSGAAGMIS-NHLLFKLASGEVFGQD----------------QPIALKLLGSERSFQALEGVAMELEDSLYPL   84 (175)
T ss_dssp             CCCEEEEEETTTSHHH-HHHHHHHHHTTTTCTT----------------CCEEEEEECCGGGHHHHHHHHHHHHTTTCTT
T ss_pred             CCCcEEEEECCCcHHH-HHHHHHHHcCcccCCC----------------ceEEEEEecCccccchhcchhhhhccccccc
Confidence            46789999997 6677 4555566655432211                1244556666552110               


Q ss_pred             ------ccccccCcCCCcEEEEEEeCCCch--hH-------HHHHHHHHHHHhhhCC-CCCEEEEeeCCcc
Q 036449           68 ------NRLRPLSYRGADVFILAFSLISKA--SY-------ENVSKKWIPELKHYAP-GVPIILVGTKLDL  122 (197)
Q Consensus        68 ------~~~~~~~~~~~~~~i~v~d~~~~~--s~-------~~~~~~~~~~i~~~~~-~~~~ivv~nK~D~  122 (197)
                            .......+.++|++|++-......  +-       ..+...+.+.+.+..| +..+++++|=.|.
T Consensus        85 ~~~~~~~~~~~~~~~~aDvVvi~ag~~rkpg~tR~Dll~~N~~I~k~~~~~i~~~a~~~~~vlvv~NPvd~  155 (175)
T d7mdha1          85 LREVSIGIDPYEVFEDVDWALLIGAKPRGPGMERAALLDINGQIFADQGKALNAVASKNVKVLVVGNPCNT  155 (175)
T ss_dssp             EEEEEEESCHHHHTTTCSEEEECCCCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHSCTTCEEEECSSSHHH
T ss_pred             ccCccccccchhhccCCceEEEeeccCCCCCCcHHHHHHHHHHHHHHHHHHHHhhCCCCcEEEEecCcHHH
Confidence                  011122367889999887664332  11       1233566777777765 5667778786664

>d1nlfa_ c.37.1.11 (A:) Hexameric replicative helicase repA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Hexameric replicative helicase repA
species: Escherichia coli [TaxId: 562]

Probab=93.34  E-value=0.022  Score=39.35  Aligned_cols=19  Identities=26%  Similarity=0.420  Sum_probs=16.2

Q ss_pred             EEEEcCCCCCHHHHHHHHh
Q 036449            9 CVTVGDGAVGKTCLLISYT   27 (197)
Q Consensus         9 i~v~G~~~~GKstli~~~~   27 (197)
                      +++.|++|+|||+|+..+.
T Consensus        32 ~~i~G~~G~GKS~l~l~la   50 (274)
T d1nlfa_          32 GALVSPGGAGKSMLALQLA   50 (274)
T ss_dssp             EEEEESTTSSHHHHHHHHH
T ss_pred             EEEEeCCCCCHHHHHHHHH
Confidence            6689999999999996654

>d1deka_ c.37.1.1 (A:) Deoxynucleoside monophosphate kinase {Bacteriophage T4 [TaxId: 10665]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxynucleoside monophosphate kinase
species: Bacteriophage T4 [TaxId: 10665]

Probab=93.11  E-value=0.031  Score=37.86  Aligned_cols=21  Identities=19%  Similarity=-0.050  Sum_probs=18.4

Q ss_pred             EEEEEcCCCCCHHHHHHHHhh
Q 036449            8 KCVTVGDGAVGKTCLLISYTS   28 (197)
Q Consensus         8 ~i~v~G~~~~GKstli~~~~~   28 (197)
                      -|.+.|..||||||..+.|..
T Consensus         3 iIgiTG~igSGKsTva~~l~e   23 (241)
T d1deka_           3 LIFLSGVKRSGKDTTADFIMS   23 (241)
T ss_dssp             EEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            478999999999999988854

>d1tuea_ c.37.1.20 (A:) Replication protein E1 helicase domain {Human papillomavirus type 18 [TaxId: 333761]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication protein E1 helicase domain
species: Human papillomavirus type 18 [TaxId: 333761]

Probab=93.08  E-value=0.027  Score=37.23  Aligned_cols=25  Identities=20%  Similarity=0.234  Sum_probs=20.7

Q ss_pred             CceeEEEEEcCCCCCHHHHHHHHhh
Q 036449            4 SRFIKCVTVGDGAVGKTCLLISYTS   28 (197)
Q Consensus         4 ~~~~~i~v~G~~~~GKstli~~~~~   28 (197)
                      ++.=.+++.|++++|||.++.++..
T Consensus        51 PKkn~i~~~GP~~TGKS~f~~sl~~   75 (205)
T d1tuea_          51 PKKNCLVFCGPANTGKSYFGMSFIH   75 (205)
T ss_dssp             TTCSEEEEESCGGGCHHHHHHHHHH
T ss_pred             CCceEEEEECCCCccHHHHHHHHHH
Confidence            3445689999999999999987764

>d1xpua3 c.37.1.11 (A:129-417) Transcription termination factor Rho, ATPase domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Transcription termination factor Rho, ATPase domain
species: Escherichia coli [TaxId: 562]

Probab=92.89  E-value=0.027  Score=39.53  Aligned_cols=22  Identities=27%  Similarity=0.344  Sum_probs=19.1

Q ss_pred             EEEEEcCCCCCHHHHHHHHhhC
Q 036449            8 KCVTVGDGAVGKTCLLISYTSN   29 (197)
Q Consensus         8 ~i~v~G~~~~GKstli~~~~~~   29 (197)
                      |++++|++|+|||+|+..+..+
T Consensus        45 r~~I~g~~g~GKT~l~~~i~~~   66 (289)
T d1xpua3          45 RGLIVAPPKAGKTMLLQNIAQS   66 (289)
T ss_dssp             EEEEEECSSSSHHHHHHHHHHH
T ss_pred             eeeEeCCCCCCHHHHHHHHHHH
Confidence            7899999999999999776653

>d1cp2a_ c.37.1.10 (A:) Nitrogenase iron protein {Clostridium pasteurianum [TaxId: 1501]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Nitrogenase iron protein
species: Clostridium pasteurianum [TaxId: 1501]

Probab=92.24  E-value=0.044  Score=37.76  Aligned_cols=69  Identities=13%  Similarity=0.184  Sum_probs=38.4

Q ss_pred             EEEEEEeCCCccccccc-cccCcCCCcEEEEEEeCCCchhHHHHHHHHHHHHhhhC--CCCCE-EEEeeCCcccC
Q 036449           54 VNLGLWDTAGQEDYNRL-RPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYA--PGVPI-ILVGTKLDLRD  124 (197)
Q Consensus        54 ~~~~i~D~~G~~~~~~~-~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~i~~~~--~~~~~-ivv~nK~D~~~  124 (197)
                      +.+.++|+|+.-..... .......+|.++++.+. +..++... ......+....  .+.++ -++.|+.+...
T Consensus       116 ~D~viiD~p~~~~~~~~~~~~~~~~ad~vliv~~~-~~~sl~~~-~~~~~~i~~~~~~~~~~~~~vv~N~~~~~~  188 (269)
T d1cp2a_         116 LDYVFYDVLGDVVCGGFAMPIREGKAQEIYIVASG-EMMALYAA-NNISKGIQKYAKSGGVRLGGIICNSRKVAN  188 (269)
T ss_dssp             CSEEEEEEECSSCSTTTTHHHHTTSCCEEEEEECS-SHHHHHHH-HHHHHHHHHHBTTBBCEEEEEEEECCSSSC
T ss_pred             CCEEEeccCCccchhHHHHHHHhhccCceeeccch-hhhHHHHH-HHHHHHHHhhccccceeccceEEeeecCCC
Confidence            44678899875322221 12223457877777765 55666655 45555555433  23333 37789877644

>d5mdha1 c.2.1.5 (A:1-154) Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=92.20  E-value=0.11  Score=32.57  Aligned_cols=101  Identities=22%  Similarity=0.269  Sum_probs=54.4

Q ss_pred             CceeEEEEEcC-CCCCHHHHHHHHhhCCC-CCCCCCceeeeeeEEEEECCeEEEEEEEeCCCcccc--------------
Q 036449            4 SRFIKCVTVGD-GAVGKTCLLISYTSNTF-PTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQEDY--------------   67 (197)
Q Consensus         4 ~~~~~i~v~G~-~~~GKstli~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~--------------   67 (197)
                      ++++||.++|. .++|.+... .+..+.. ...                 ....+.++|.+.....              
T Consensus         1 s~p~KV~IiGA~G~VG~~la~-~l~~~~~~~~~-----------------~~~~L~l~d~~~~~~~~~~l~~~~~~~~~~   62 (154)
T d5mdha1           1 SEPIRVLVTGAAGQIAYSLLY-SIGNGSVFGKD-----------------QPIILVLLDITPMMGVLDGVLMELQDCALP   62 (154)
T ss_dssp             CCCEEEEESSTTSHHHHTTHH-HHHTTTTTCTT-----------------CCEEEEEECCGGGHHHHHHHHHHHHHTCCT
T ss_pred             CCceEEEEECCCCHHHHHHHH-HHHHHHhcCCC-----------------CccEEEEecCccchhhhhhhhhhhcccccc
Confidence            46789999996 788976554 4444332 211                 1134556666541110              


Q ss_pred             --c-----cccccCcCCCcEEEEEEeCCCc------hhHH---HHHHHHHHHHhhhCCCCC-EEEEeeCCcc
Q 036449           68 --N-----RLRPLSYRGADVFILAFSLISK------ASYE---NVSKKWIPELKHYAPGVP-IILVGTKLDL  122 (197)
Q Consensus        68 --~-----~~~~~~~~~~~~~i~v~d~~~~------~s~~---~~~~~~~~~i~~~~~~~~-~ivv~nK~D~  122 (197)
                        .     ......+.++|++|+.-.....      +-+.   .+...+...+.+..|+.. ++++.|-+|.
T Consensus        63 ~~~~~~~~~~~~~~~~~~dvVVitag~~~~~g~sr~dll~~N~~i~k~~~~~i~k~a~~~~~iivvsNPvD~  134 (154)
T d5mdha1          63 LLKDVIATDKEEIAFKDLDVAILVGSMPRRDGMERKDLLKANVKIFKCQGAALDKYAKKSVKVIVVGNPANT  134 (154)
T ss_dssp             TEEEEEEESCHHHHTTTCSEEEECCSCCCCTTCCTTTTHHHHHHHHHHHHHHHHHHSCTTCEEEECSSSHHH
T ss_pred             cccccccCcccccccCCceEEEEecccCCCCCCchhHHHHHhHHHHHHHHHHHHhhCCCceEEEEecCcHHH
Confidence              0     0112246678888776654222      2222   233556667777766655 4566776664

>d1ldna1 c.2.1.5 (A:15-162) Lactate dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=92.13  E-value=0.3  Score=30.29  Aligned_cols=100  Identities=14%  Similarity=0.154  Sum_probs=56.6

Q ss_pred             CCCCceeEEEEEcCCCCCHHHHHHHHhhCCCCCCCCCceeeeeeEEEEECCeEEEEEEEeCCCc----------------
Q 036449            1 MSASRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQ----------------   64 (197)
Q Consensus         1 m~~~~~~~i~v~G~~~~GKstli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~----------------   64 (197)
                      |.++..-||.++|..++|.+... .+.......                     .+.++|....                
T Consensus         1 m~~~~~~KI~IiGaG~vG~~~a~-~l~~~~l~~---------------------el~L~Di~~~~~~g~a~Dl~~~~~~~   58 (148)
T d1ldna1           1 MKNNGGARVVVIGAGFVGASYVF-ALMNQGIAD---------------------EIVLIDANESKAIGDAMDFNHGKVFA   58 (148)
T ss_dssp             CTTTTSCEEEEECCSHHHHHHHH-HHHHHTCCS---------------------EEEEECSSHHHHHHHHHHHHHHTTSS
T ss_pred             CCCCCCCeEEEECcCHHHHHHHH-HHHhcCCCc---------------------eEEEEeeccccccchhccHhhCcccc
Confidence            77778889999998888866544 333332211                     1223333210                


Q ss_pred             ---cccccccccCcCCCcEEEEEEeCCCc------hhH---HHHHHHHHHHHhhhCCCCCEEEEeeCCcc
Q 036449           65 ---EDYNRLRPLSYRGADVFILAFSLISK------ASY---ENVSKKWIPELKHYAPGVPIILVGTKLDL  122 (197)
Q Consensus        65 ---~~~~~~~~~~~~~~~~~i~v~d~~~~------~s~---~~~~~~~~~~i~~~~~~~~~ivv~nK~D~  122 (197)
                         ..........+.++|.+++..-....      +.+   ..+...+.+.+....|+.-++++.|=+|.
T Consensus        59 ~~~~~~~~~d~~~l~daDvvvitag~~~~~~~~R~dl~~~N~~i~~~i~~~i~~~~p~a~~ivvtNPvd~  128 (148)
T d1ldna1          59 PKPVDIWHGDYDDCRDADLVVICAGANQKPGETRLDLVDKNIAIFRSIVESVMASGFQGLFLVATNPVDI  128 (148)
T ss_dssp             SSCCEEEECCGGGTTTCSEEEECCSCCCCTTTCSGGGHHHHHHHHHHHHHHHHHHTCCSEEEECSSSHHH
T ss_pred             CCCeEEEECCHHHhccceeEEEecccccccCcchhHHHHHHHHHHHHHHHHHHhhCCCceEEEecCccHH
Confidence               00011112346778999887655432      111   12335667777788888877777776664

>d1w36d1 c.37.1.19 (D:2-360) Exodeoxyribonuclease V alpha chain (RecD) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: Exodeoxyribonuclease V alpha chain (RecD)
species: Escherichia coli [TaxId: 562]

Probab=92.00  E-value=0.049  Score=39.49  Aligned_cols=18  Identities=28%  Similarity=0.316  Sum_probs=15.1

Q ss_pred             EEEEEcCCCCCHHHHHHH
Q 036449            8 KCVTVGDGAVGKTCLLIS   25 (197)
Q Consensus         8 ~i~v~G~~~~GKstli~~   25 (197)
                      -.++.|++|+|||+++..
T Consensus       165 ~~vI~G~pGTGKTt~i~~  182 (359)
T d1w36d1         165 ISVISGGPGTGKTTTVAK  182 (359)
T ss_dssp             EEEEECCTTSTHHHHHHH
T ss_pred             eEEEEcCCCCCceehHHH
Confidence            367899999999998844

>d1u0ja_ c.37.1.20 (A:) Rep 40 protein helicase domain {Adeno-associated virus 2, AAV2 [TaxId: 10804]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Rep 40 protein helicase domain
species: Adeno-associated virus 2, AAV2 [TaxId: 10804]

Probab=91.73  E-value=0.083  Score=36.55  Aligned_cols=26  Identities=15%  Similarity=0.130  Sum_probs=21.5

Q ss_pred             CceeEEEEEcCCCCCHHHHHHHHhhC
Q 036449            4 SRFIKCVTVGDGAVGKTCLLISYTSN   29 (197)
Q Consensus         4 ~~~~~i~v~G~~~~GKstli~~~~~~   29 (197)
                      ++.--+++.|++++|||+|++.+..-
T Consensus       102 ~k~n~~~l~G~~~tGKS~f~~~i~~~  127 (267)
T d1u0ja_         102 GKRNTIWLFGPATTGKTNIAEAIAHT  127 (267)
T ss_dssp             TTCCEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CccEEEEEEcCCCCCHHHHHHHHHHH
Confidence            45567889999999999999887753

>d1mlda1 c.2.1.5 (A:1-144) Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=91.09  E-value=0.49  Score=29.16  Aligned_cols=49  Identities=12%  Similarity=0.247  Sum_probs=32.5

Q ss_pred             CcCCCcEEEEEEeCCCc------hh---HHHHHHHHHHHHhhhCCCCCEEEEeeCCcc
Q 036449           74 SYRGADVFILAFSLISK------AS---YENVSKKWIPELKHYAPGVPIILVGTKLDL  122 (197)
Q Consensus        74 ~~~~~~~~i~v~d~~~~------~s---~~~~~~~~~~~i~~~~~~~~~ivv~nK~D~  122 (197)
                      .++++|++++..-....      +-   ...+.+.+.+.+.+..|+.-++++.|=.|.
T Consensus        65 ~~~~aDivVitag~~~~~g~sR~~ll~~N~~i~~~i~~~i~~~~p~~iiivvtNPvD~  122 (144)
T d1mlda1          65 CLKGCDVVVIPAGVPRKPGMTRDDLFNTNATIVATLTAACAQHCPDAMICIISNPVNS  122 (144)
T ss_dssp             HHTTCSEEEECCSCCCCTTCCGGGGHHHHHHHHHHHHHHHHHHCTTSEEEECSSCHHH
T ss_pred             HhCCCCEEEECCCcCCCCCCCcchHHHHHHHHHHHHHHHHHhcCCCeEEEEecCchhh
Confidence            36789988887654221      11   222336677788888888888888887774

>d1u94a1 c.37.1.11 (A:6-268) RecA protein, ATPase-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: RecA protein, ATPase-domain
species: Escherichia coli [TaxId: 562]

Probab=90.98  E-value=0.076  Score=36.67  Aligned_cols=20  Identities=25%  Similarity=0.310  Sum_probs=17.0

Q ss_pred             EEEEcCCCCCHHHHHHHHhh
Q 036449            9 CVTVGDGAVGKTCLLISYTS   28 (197)
Q Consensus         9 i~v~G~~~~GKstli~~~~~   28 (197)
                      +.+.|++|+|||+|+-.+..
T Consensus        57 tei~G~~gsGKTtl~l~~~~   76 (263)
T d1u94a1          57 VEIYGPESSGKTTLTLQVIA   76 (263)
T ss_dssp             EEEECSTTSSHHHHHHHHHH
T ss_pred             EEEecCCCcHHHHHHHHHHH
Confidence            67899999999999966554

>d1g8fa3 c.37.1.15 (A:390-511) ATP sulfurylase C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ATP sulfurylase C-terminal domain
domain: ATP sulfurylase C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=90.96  E-value=0.094  Score=31.49  Aligned_cols=24  Identities=21%  Similarity=0.059  Sum_probs=21.1

Q ss_pred             ceeEEEEEcCCCCCHHHHHHHHhh
Q 036449            5 RFIKCVTVGDGAVGKTCLLISYTS   28 (197)
Q Consensus         5 ~~~~i~v~G~~~~GKstli~~~~~   28 (197)
                      .-+.|.+-|.+|+|||+|.+++..
T Consensus         5 qgf~i~~tg~~~~gk~~ia~al~~   28 (122)
T d1g8fa3           5 QGFSIVLGNSLTVSREQLSIALLS   28 (122)
T ss_dssp             CCEEEEECTTCCSCHHHHHHHHHH
T ss_pred             cceEEEEeCCCCCCHHHHHHHHHH
Confidence            448899999999999999988864

>d1y7ta1 c.2.1.5 (A:0-153) Malate dehydrogenase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Thermus thermophilus [TaxId: 274]

Probab=90.84  E-value=0.24  Score=30.95  Aligned_cols=49  Identities=20%  Similarity=0.246  Sum_probs=30.7

Q ss_pred             CcCCCcEEEEEEeCCCchh------H---HHHHHHHHHHHhhhCC-CCCEEEEeeCCcc
Q 036449           74 SYRGADVFILAFSLISKAS------Y---ENVSKKWIPELKHYAP-GVPIILVGTKLDL  122 (197)
Q Consensus        74 ~~~~~~~~i~v~d~~~~~s------~---~~~~~~~~~~i~~~~~-~~~~ivv~nK~D~  122 (197)
                      .++++|++|+.-.....+.      +   -.+.+.+...+.+..| +.-++++.|-.|.
T Consensus        77 ~~~~advViitaG~~~~pg~~r~dl~~~N~~i~~~~~~~i~k~a~~~~~vivvsNPvDv  135 (154)
T d1y7ta1          77 AFKDADYALLVGAAPRKAGMERRDLLQVNGKIFTEQGRALAEVAKKDVKVLVVGNPANT  135 (154)
T ss_dssp             HTTTCSEEEECCCCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHSCTTCEEEECSSSHHH
T ss_pred             hcccccEEEeecCcCCCCCCcHHHHHHHHHHHHHHHHHHHHHhCCCCcEEEEecCcHHH
Confidence            4778999999876653321      1   1233566777777765 5556677776664

>d1guza1 c.2.1.5 (A:1-142) Malate dehydrogenase {Chlorobium vibrioforme [TaxId: 1098]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Chlorobium vibrioforme [TaxId: 1098]

Probab=90.73  E-value=0.64  Score=28.44  Aligned_cols=49  Identities=20%  Similarity=0.282  Sum_probs=29.3

Q ss_pred             CcCCCcEEEEEEeCCCch---h------HHHHHHHHHHHHhhhCCCCCEEEEeeCCcc
Q 036449           74 SYRGADVFILAFSLISKA---S------YENVSKKWIPELKHYAPGVPIILVGTKLDL  122 (197)
Q Consensus        74 ~~~~~~~~i~v~d~~~~~---s------~~~~~~~~~~~i~~~~~~~~~ivv~nK~D~  122 (197)
                      .+.++|.+++..-.....   .      ...+...+.+.+.+.+|+.-++++.|=+|.
T Consensus        66 ~~~dadvvvitag~~~~~g~~r~~l~~~N~~i~~~i~~~i~~~~p~aivivvtNPvd~  123 (142)
T d1guza1          66 DTANSDIVIITAGLPRKPGMTREDLLMKNAGIVKEVTDNIMKHSKNPIIIVVSNPLDI  123 (142)
T ss_dssp             GGTTCSEEEECCSCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHCSSCEEEECCSSHHH
T ss_pred             HhcCCeEEEEEEecCCCCCCchHHHHHHHHHHHHHHHHHhhccCCCeEEEEecCChHH
Confidence            467888888876543221   1      112235566777777777767777675553

>d1ny5a2 c.37.1.20 (A:138-384) Transcriptional activator sigm54 (NtrC1), C-terminal domain {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Transcriptional activator sigm54 (NtrC1), C-terminal domain
species: Aquifex aeolicus [TaxId: 63363]

Probab=90.52  E-value=0.085  Score=36.02  Aligned_cols=23  Identities=17%  Similarity=0.219  Sum_probs=19.2

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhhC
Q 036449            7 IKCVTVGDGAVGKTCLLISYTSN   29 (197)
Q Consensus         7 ~~i~v~G~~~~GKstli~~~~~~   29 (197)
                      .-|++.|++|+||+.+.+.+-..
T Consensus        24 ~pvlI~Ge~GtGK~~~A~~ih~~   46 (247)
T d1ny5a2          24 CPVLITGESGVGKEVVARLIHKL   46 (247)
T ss_dssp             SCEEEECSTTSSHHHHHHHHHHH
T ss_pred             CCEEEECCCCcCHHHHHHHHHHh
Confidence            45899999999999998877643

>d2jdid3 c.37.1.11 (D:82-357) Central domain of beta subunit of F1 ATP synthase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Central domain of beta subunit of F1 ATP synthase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=90.33  E-value=0.076  Score=36.89  Aligned_cols=22  Identities=36%  Similarity=0.525  Sum_probs=19.4

Q ss_pred             EEEEEcCCCCCHHHHHHHHhhC
Q 036449            8 KCVTVGDGAVGKTCLLISYTSN   29 (197)
Q Consensus         8 ~i~v~G~~~~GKstli~~~~~~   29 (197)
                      |+.++|.+|+|||+|+..+..+
T Consensus        70 r~~If~~~g~GKt~l~~~i~~~   91 (276)
T d2jdid3          70 KIGLFGGAGVGKTVLIMELINN   91 (276)
T ss_dssp             EEEEEECTTSSHHHHHHHHHHH
T ss_pred             EEEeeCCCCCCHHHHHHHHHHH
Confidence            7899999999999999777654

>d1ihua1 c.37.1.10 (A:1-296) Arsenite-translocating ATPase ArsA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Arsenite-translocating ATPase ArsA
species: Escherichia coli [TaxId: 562]

Probab=90.28  E-value=0.088  Score=36.52  Aligned_cols=38  Identities=24%  Similarity=0.257  Sum_probs=24.8

Q ss_pred             cEEEEEEeCCCchhHHHHHHHHHHHHhhhCCCCCE-EEEeeCC
Q 036449           79 DVFILAFSLISKASYENVSKKWIPELKHYAPGVPI-ILVGTKL  120 (197)
Q Consensus        79 ~~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~~~-ivv~nK~  120 (197)
                      +.+++|... ++.+..+. ...+..+...  ++|+ -+|+|+.
T Consensus       199 t~~~lVt~p-e~~~~~~~-~r~~~~l~~~--gi~~~~vVvN~v  237 (296)
T d1ihua1         199 TRLVLVARL-QKSTLQEV-ARTHLELAAI--GLKNQYLVINGV  237 (296)
T ss_dssp             EEEEEEEES-CHHHHHHH-HHHHHHHHHH--TCCCEEEEEEEE
T ss_pred             ceeeEecCc-chhHHHHH-HHHHHHHHhc--CCCceEEEEcCC
Confidence            356666543 35566666 6777777776  5666 4778986

>d1ihua2 c.37.1.10 (A:308-586) Arsenite-translocating ATPase ArsA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Arsenite-translocating ATPase ArsA
species: Escherichia coli [TaxId: 562]

Probab=89.52  E-value=0.095  Score=36.10  Aligned_cols=15  Identities=40%  Similarity=0.707  Sum_probs=12.7

Q ss_pred             EEEEcCCCCCHHHHH
Q 036449            9 CVTVGDGAVGKTCLL   23 (197)
Q Consensus         9 i~v~G~~~~GKstli   23 (197)
                      |++.|..|+||||+.
T Consensus        23 ii~sGKGGVGKTT~a   37 (279)
T d1ihua2          23 IMLMGKGGVGKTTMA   37 (279)
T ss_dssp             EEEECSTTSSHHHHH
T ss_pred             EEEECCCCCCHHHHH
Confidence            456699999999986

>d1zpda1 c.31.1.3 (A:188-362) Pyruvate decarboxylase {Zymomonas mobilis [TaxId: 542]}

class: Alpha and beta proteins (a/b)
fold: DHS-like NAD/FAD-binding domain
superfamily: DHS-like NAD/FAD-binding domain
family: Pyruvate oxidase and decarboxylase, middle domain
domain: Pyruvate decarboxylase
species: Zymomonas mobilis [TaxId: 542]

Probab=89.16  E-value=0.86  Score=28.91  Aligned_cols=56  Identities=16%  Similarity=0.199  Sum_probs=42.1

Q ss_pred             CCCchhHHHHHHHHHHHHhhhCCCCCEEEEeeCCcccCCcccccCCCCCCcccHHHHHHHHHHhCCCceEEec
Q 036449           87 LISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPISTAQGEELRKLIGAPAYIECS  159 (197)
Q Consensus        87 ~~~~~s~~~~~~~~~~~i~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s  159 (197)
                      .+|+.+++.......+.+...  +.|+|++|.......              ..++..+|++..++ +++.+-
T Consensus         2 ~sd~~~l~~~v~~~~~~l~~A--krPvIi~G~g~~~~~--------------a~~~l~~lae~~~~-Pv~tt~   57 (175)
T d1zpda1           2 ASDEASLNAAVDETLKFIANR--DKVAVLVGSKLRAAG--------------AEEAAVKFTDALGG-AVATMA   57 (175)
T ss_dssp             CCCHHHHHHHHHHHHHHHTTC--SCEEEEECTTTTTTT--------------CHHHHHHHHHHHCC-CEEEEG
T ss_pred             CCChHHHHHHHHHHHHHHHcC--CCEEEEECcCccccc--------------hHHHHHHHHHhhce-eEEecc
Confidence            367777777767777777666  799999998876543              35778899999998 676544

>d2afhe1 c.37.1.10 (E:1-289) Nitrogenase iron protein {Azotobacter vinelandii [TaxId: 354]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Nitrogenase iron protein
species: Azotobacter vinelandii [TaxId: 354]

Probab=89.05  E-value=0.13  Score=35.76  Aligned_cols=67  Identities=12%  Similarity=0.087  Sum_probs=34.6

Q ss_pred             EEEEEEeCCCcccccccccc-CcCCCcEEEEEEeCCCchhHHHHHHHHHHHHhhhC--CCCCE-EEEeeCCcc
Q 036449           54 VNLGLWDTAGQEDYNRLRPL-SYRGADVFILAFSLISKASYENVSKKWIPELKHYA--PGVPI-ILVGTKLDL  122 (197)
Q Consensus        54 ~~~~i~D~~G~~~~~~~~~~-~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~i~~~~--~~~~~-ivv~nK~D~  122 (197)
                      +.+.++|+|+.-........ ....++.++++.. .+..++..+ ..+...+....  ++.++ -+|.|+.+.
T Consensus       119 ~D~iiiD~pp~~~~~~~~~~~~~~~a~~vlv~~~-~~~~s~~~~-~~~~~~i~~~~~~~~~~~~gvv~n~~~~  189 (289)
T d2afhe1         119 LDFVFYDVLGDVVCGGFAMPIRENKAQEIYIVCS-GEMMAMYAA-NNISKGIVKYANSGSVRLGGLICNSRNT  189 (289)
T ss_dssp             CSEEEEEEECSSCCTTTTHHHHTTCCCEEEEEEC-SSHHHHHHH-HHHHHHHHHHHTTSCCEEEEEEEECCCC
T ss_pred             CCeEeeccCCccCHHHHHHHHHhhccceeecccc-hhHHHHHHH-HHHHHHHHhhhhcccccccceeehhhcc
Confidence            44668888875322222111 1234566665544 445555555 44555554332  34554 377888764

>d1a5za1 c.2.1.5 (A:22-163) Lactate dehydrogenase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Thermotoga maritima [TaxId: 2336]

Probab=89.00  E-value=0.57  Score=28.64  Aligned_cols=49  Identities=29%  Similarity=0.468  Sum_probs=30.5

Q ss_pred             CcCCCcEEEEEEeCCCch--h-------HHHHHHHHHHHHhhhCCCCCEEEEeeCCcc
Q 036449           74 SYRGADVFILAFSLISKA--S-------YENVSKKWIPELKHYAPGVPIILVGTKLDL  122 (197)
Q Consensus        74 ~~~~~~~~i~v~d~~~~~--s-------~~~~~~~~~~~i~~~~~~~~~ivv~nK~D~  122 (197)
                      .+.++|.+++..-.....  +       ...+...+.+.+.+..|+.-++++.|=+|.
T Consensus        64 ~~~~adivvitag~~~~~g~~r~dl~~~N~~I~~~i~~~i~~~~p~aivivvtNPvd~  121 (140)
T d1a5za1          64 DLKGSDVVIVAAGVPQKPGETRLQLLGRNARVMKEIARNVSKYAPDSIVIVVTNPVDV  121 (140)
T ss_dssp             GGTTCSEEEECCCCCCCSSCCHHHHHHHHHHHHHHHHHHHHHHCTTCEEEECSSSHHH
T ss_pred             HhcCCCEEEEecccccCCCcchhhhhccccchHHHHHHHHHhcCCCcEEEEeCCcHHH
Confidence            367899888876543221  1       112335667778888888877777765554

>d1byia_ c.37.1.10 (A:) Dethiobiotin synthetase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Dethiobiotin synthetase
species: Escherichia coli [TaxId: 562]

Probab=88.62  E-value=0.14  Score=33.59  Aligned_cols=17  Identities=29%  Similarity=0.399  Sum_probs=14.8

Q ss_pred             EEEEEcCC-CCCHHHHHH
Q 036449            8 KCVTVGDG-AVGKTCLLI   24 (197)
Q Consensus         8 ~i~v~G~~-~~GKstli~   24 (197)
                      |+.|.|-. ||||||+.-
T Consensus         3 ~~~i~gt~~GVGKTtvs~   20 (224)
T d1byia_           3 RYFVTGTDTEVGKTVASC   20 (224)
T ss_dssp             EEEEEESSTTSCHHHHHH
T ss_pred             eEEEEECCCCccHHHHHH
Confidence            68899995 999999883

>d1a1va1 c.37.1.14 (A:190-325) HCV helicase domain {Human hepatitis C virus (HCV), different isolates [TaxId: 11103]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RNA helicase
domain: HCV helicase domain
species: Human hepatitis C virus (HCV), different isolates [TaxId: 11103]

Probab=88.13  E-value=0.12  Score=31.34  Aligned_cols=21  Identities=10%  Similarity=-0.034  Sum_probs=16.2

Q ss_pred             EEEEEcCCCCCHHHHHHHHhh
Q 036449            8 KCVTVGDGAVGKTCLLISYTS   28 (197)
Q Consensus         8 ~i~v~G~~~~GKstli~~~~~   28 (197)
                      ..++.++.|+|||.++-.+..
T Consensus        10 ~~ll~apTGsGKT~~~~~~~~   30 (136)
T d1a1va1          10 VAHLHAPTGSGKSTKVPAAYA   30 (136)
T ss_dssp             EEEEECCTTSCTTTHHHHHHH
T ss_pred             EEEEEeCCCCCHHHHHHHHHH
Confidence            347799999999988855443

>d1c9ka_ c.37.1.11 (A:) Adenosylcobinamide kinase/adenosylcobinamide phosphate guanylyltransferase CobU {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Adenosylcobinamide kinase/adenosylcobinamide phosphate guanylyltransferase CobU
species: Salmonella typhimurium [TaxId: 90371]

Probab=88.08  E-value=0.1  Score=33.78  Aligned_cols=21  Identities=14%  Similarity=0.204  Sum_probs=18.5

Q ss_pred             EEEEcCCCCCHHHHHHHHhhC
Q 036449            9 CVTVGDGAVGKTCLLISYTSN   29 (197)
Q Consensus         9 i~v~G~~~~GKstli~~~~~~   29 (197)
                      |+|+|...||||.+..++...
T Consensus         2 iLVtGGarSGKS~~AE~l~~~   22 (180)
T d1c9ka_           2 ILVTGGARSGKSRHAEALIGD   22 (180)
T ss_dssp             EEEEECTTSSHHHHHHHHHCS
T ss_pred             EEEECCCCccHHHHHHHHHhc
Confidence            689999999999999888643

>d1g3qa_ c.37.1.10 (A:) Cell division regulator MinD {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Cell division regulator MinD
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=87.91  E-value=0.94  Score=29.75  Aligned_cols=65  Identities=15%  Similarity=0.100  Sum_probs=43.2

Q ss_pred             EEEEEEeCCCccccccccccCcCCCcEEEEEEeCCCchhHHHHHHHHHHHHhhhCCCCCEE-EEeeCCcccC
Q 036449           54 VNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPII-LVGTKLDLRD  124 (197)
Q Consensus        54 ~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~~~i-vv~nK~D~~~  124 (197)
                      +.+.++|+|+.....  ....+..+|.++++...+ ..++... ..+...+.+.  +.|++ +|.|+.+...
T Consensus       112 ~d~IiiD~~~~~~~~--~~~~l~~aD~viiv~~~~-~~s~~~~-~~~~~~~~~~--~~~~~giv~N~~~~~~  177 (237)
T d1g3qa_         112 FDFILIDCPAGLQLD--AMSAMLSGEEALLVTNPE-ISCLTDT-MKVGIVLKKA--GLAILGFVLNRYGRSD  177 (237)
T ss_dssp             CSEEEEECCSSSSHH--HHHHHTTCSEEEEEECSC-HHHHHHH-HHHHHHHHHT--TCEEEEEEEEEETSCT
T ss_pred             CCEEEEccccccccc--chhhhhhhhccccccccc-ceecchh-hHHHHHHhhh--hhhhhhhhhccccccc
Confidence            457799998864322  223456799999988854 5555555 4556666554  67765 8899998644

>d2olra1 c.91.1.1 (A:228-540) Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: PEP carboxykinase C-terminal domain
domain: Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase)
species: Escherichia coli [TaxId: 562]

Probab=87.90  E-value=0.11  Score=36.53  Aligned_cols=14  Identities=43%  Similarity=0.442  Sum_probs=13.2

Q ss_pred             EEEcCCCCCHHHHH
Q 036449           10 VTVGDGAVGKTCLL   23 (197)
Q Consensus        10 ~v~G~~~~GKstli   23 (197)
                      ++.|.+|+|||||-
T Consensus        18 lfFGLSGTGKTTLs   31 (313)
T d2olra1          18 VFFGLSGTGKTTLS   31 (313)
T ss_dssp             EEECSTTSSHHHHH
T ss_pred             EEEccCCCCcccce
Confidence            69999999999988

>d1t2da1 c.2.1.5 (A:1-150) Lactate dehydrogenase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]

Probab=87.88  E-value=1  Score=27.85  Aligned_cols=50  Identities=22%  Similarity=0.287  Sum_probs=33.8

Q ss_pred             cCcCCCcEEEEEEeCCCc----------hh----HHHHHHHHHHHHhhhCCCCCEEEEeeCCcc
Q 036449           73 LSYRGADVFILAFSLISK----------AS----YENVSKKWIPELKHYAPGVPIILVGTKLDL  122 (197)
Q Consensus        73 ~~~~~~~~~i~v~d~~~~----------~s----~~~~~~~~~~~i~~~~~~~~~ivv~nK~D~  122 (197)
                      ..+.++|++++..-....          ..    ...+...+.+.+.+.+|+.-++++.|=+|.
T Consensus        67 ~~~~~advvvitag~~~~~g~~~~~~~R~~l~~~N~~iv~~i~~~i~~~~p~aivivvtNPvD~  130 (150)
T d1t2da1          67 DDLAGADVVIVTAGFTKAPGKSDKEWNRDDLLPLNNKIMIEIGGHIKKNCPNAFIIVVTNPVDV  130 (150)
T ss_dssp             GGGTTCSEEEECCSCSSCTTCCSTTCCGGGGHHHHHHHHHHHHHHHHHHCTTSEEEECSSSHHH
T ss_pred             cccCCCcEEEEecccccCCCCCccccchhHHHHHHHHHHHHHHHHHHhcCCCeEEEEecCchHH
Confidence            456789999998876432          11    222346677778888888877887776665

>d1ez4a1 c.2.1.5 (A:16-162) Lactate dehydrogenase {Lactobacillus pentosus [TaxId: 1589]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Lactobacillus pentosus [TaxId: 1589]

Probab=87.63  E-value=0.79  Score=28.23  Aligned_cols=49  Identities=10%  Similarity=0.141  Sum_probs=29.5

Q ss_pred             CcCCCcEEEEEEeCCCch------hH---HHHHHHHHHHHhhhCCCCCEEEEeeCCcc
Q 036449           74 SYRGADVFILAFSLISKA------SY---ENVSKKWIPELKHYAPGVPIILVGTKLDL  122 (197)
Q Consensus        74 ~~~~~~~~i~v~d~~~~~------s~---~~~~~~~~~~i~~~~~~~~~ivv~nK~D~  122 (197)
                      .+.++|++++........      .+   ..+...+.+.+.+..|+..++++.|=+|.
T Consensus        69 ~~~~adivvitag~~~~~g~~r~~l~~~N~~i~~~~~~~i~~~~p~aivivvtNPvdv  126 (146)
T d1ez4a1          69 DCKDADLVVITAGAPQKPGESRLDLVNKNLNILSSIVKPVVDSGFDGIFLVAANPVDI  126 (146)
T ss_dssp             GGTTCSEEEECCCC----------CHHHHHHHHHHHHHHHHHTTCCSEEEECSSSHHH
T ss_pred             HhccccEEEEecccccCCCCCHHHHHHHHHHHHHHHHHHHhhcCCCcEEEEeCCccHH
Confidence            357899888876543221      11   12335677778877787777777765554

>d1j3ba1 c.91.1.1 (A:212-529) Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: PEP carboxykinase C-terminal domain
domain: Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase)
species: Thermus thermophilus [TaxId: 274]

Probab=87.08  E-value=0.12  Score=36.45  Aligned_cols=15  Identities=40%  Similarity=0.423  Sum_probs=13.7

Q ss_pred             EEEEcCCCCCHHHHH
Q 036449            9 CVTVGDGAVGKTCLL   23 (197)
Q Consensus         9 i~v~G~~~~GKstli   23 (197)
                      -++.|.+|+|||||-
T Consensus        17 alffGLSGTGKTTLs   31 (318)
T d1j3ba1          17 AVFFGLSGTGKTTLS   31 (318)
T ss_dssp             EEEEECTTSCHHHHT
T ss_pred             EEEEccCCCCccccc
Confidence            489999999999987

>d1y6ja1 c.2.1.5 (A:7-148) Lactate dehydrogenase {Clostridium thermocellum [TaxId: 1515]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Clostridium thermocellum [TaxId: 1515]

Probab=86.65  E-value=1  Score=27.50  Aligned_cols=49  Identities=16%  Similarity=0.257  Sum_probs=27.7

Q ss_pred             CcCCCcEEEEEEeCCCc--hh----H---HHHHHHHHHHHhhhCCCCCEEEEeeCCcc
Q 036449           74 SYRGADVFILAFSLISK--AS----Y---ENVSKKWIPELKHYAPGVPIILVGTKLDL  122 (197)
Q Consensus        74 ~~~~~~~~i~v~d~~~~--~s----~---~~~~~~~~~~i~~~~~~~~~ivv~nK~D~  122 (197)
                      .+.++|.+++..-....  ++    +   ..+.....+.+.+..|+.-++++.|=.|.
T Consensus        65 ~~~~adivvitag~~~~~~~~r~~l~~~N~~i~~~i~~~i~~~~p~ai~ivvtNPvdv  122 (142)
T d1y6ja1          65 DVKDCDVIVVTAGANRKPGETRLDLAKKNVMIAKEVTQNIMKYYNHGVILVVSNPVDI  122 (142)
T ss_dssp             GGTTCSEEEECCCC------CHHHHHHHHHHHHHHHHHHHHHHCCSCEEEECSSSHHH
T ss_pred             HhCCCceEEEecccccCcCcchhHHhhHHHHHHHHHHHHhhccCCCceEEEecChHHH
Confidence            46788988887544322  11    1   11224556667777777767777775554

>d1ii2a1 c.91.1.1 (A:201-523) Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) {Trypanosoma cruzi [TaxId: 5693]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: PEP carboxykinase C-terminal domain
domain: Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase)
species: Trypanosoma cruzi [TaxId: 5693]

Probab=86.64  E-value=0.15  Score=36.05  Aligned_cols=15  Identities=40%  Similarity=0.401  Sum_probs=13.7

Q ss_pred             EEEEcCCCCCHHHHH
Q 036449            9 CVTVGDGAVGKTCLL   23 (197)
Q Consensus         9 i~v~G~~~~GKstli   23 (197)
                      -++.|.+|+|||||.
T Consensus        17 alfFGLSGTGKTTLs   31 (323)
T d1ii2a1          17 TVFFGLSGTGKTTLS   31 (323)
T ss_dssp             EEEECCTTSSHHHHH
T ss_pred             EEEEccCCCCcccce
Confidence            369999999999998

>d1pzga1 c.2.1.5 (A:14-163) Lactate dehydrogenase {Toxoplasma gondii [TaxId: 5811]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Toxoplasma gondii [TaxId: 5811]

Probab=86.05  E-value=0.75  Score=28.60  Aligned_cols=49  Identities=27%  Similarity=0.399  Sum_probs=30.9

Q ss_pred             CcCCCcEEEEEEeCCC-----------chhH---HHHHHHHHHHHhhhCCCCCEEEEeeCCcc
Q 036449           74 SYRGADVFILAFSLIS-----------KASY---ENVSKKWIPELKHYAPGVPIILVGTKLDL  122 (197)
Q Consensus        74 ~~~~~~~~i~v~d~~~-----------~~s~---~~~~~~~~~~i~~~~~~~~~ivv~nK~D~  122 (197)
                      .+.++|.+++..-...           .+.+   ..+...+.+.+.+..|+.-++++.|=+|.
T Consensus        73 ~~~~adiVvitag~~~~~g~~~~~~tR~~l~~~n~~iv~~i~~~i~~~~p~aiviivsNPvd~  135 (154)
T d1pzga1          73 ALTGADCVIVTAGLTKVPGKPDSEWSRNDLLPFNSKIIREIGQNIKKYCPKTFIIVVTNPLDC  135 (154)
T ss_dssp             HHTTCSEEEECCSCSSCTTCCGGGCCGGGGHHHHHHHHHHHHHHHHHHCTTCEEEECCSSHHH
T ss_pred             hhcCCCeEEEecccccCCCCCCcccchhhhhhhhHHHHHHHHHHHHhcCCCcEEEEeCCcHHH
Confidence            3567888888764421           1222   12336677778888888777877776664

>d2jdia3 c.37.1.11 (A:95-379) Central domain of alpha subunit of F1 ATP synthase {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Central domain of alpha subunit of F1 ATP synthase
species: Cow (Bos taurus) [TaxId: 9913]

Probab=85.94  E-value=0.19  Score=35.06  Aligned_cols=22  Identities=27%  Similarity=0.401  Sum_probs=18.5

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhh
Q 036449            7 IKCVTVGDGAVGKTCLLISYTS   28 (197)
Q Consensus         7 ~~i~v~G~~~~GKstli~~~~~   28 (197)
                      =|+.++|.+|+|||+|+..+..
T Consensus        69 Qr~~If~~~g~GKt~ll~~~~~   90 (285)
T d2jdia3          69 QRELIIGDRQTGKTSIAIDTII   90 (285)
T ss_dssp             CBCEEEESTTSSHHHHHHHHHH
T ss_pred             CEEEeecCCCCChHHHHHHHHH
Confidence            3789999999999999866654

>d1mo6a1 c.37.1.11 (A:1-269) RecA protein, ATPase-domain {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: RecA protein, ATPase-domain
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=85.82  E-value=0.27  Score=33.94  Aligned_cols=20  Identities=20%  Similarity=0.242  Sum_probs=16.6

Q ss_pred             EEEEcCCCCCHHHHHHHHhh
Q 036449            9 CVTVGDGAVGKTCLLISYTS   28 (197)
Q Consensus         9 i~v~G~~~~GKstli~~~~~   28 (197)
                      +.+.|++++|||+|+-.+..
T Consensus        63 ~e~~G~~~~GKT~l~l~~~~   82 (269)
T d1mo6a1          63 IEIYGPESSGKTTVALHAVA   82 (269)
T ss_dssp             EEEECSSSSSHHHHHHHHHH
T ss_pred             EEEecCCCcHHHHHHHHHHH
Confidence            67899999999999865553

>d2gnoa2 c.37.1.20 (A:11-208) gamma subunit of DNA polymerase III, N-domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: gamma subunit of DNA polymerase III, N-domain
species: Thermotoga maritima [TaxId: 2336]

Probab=85.24  E-value=0.34  Score=31.66  Aligned_cols=102  Identities=11%  Similarity=0.148  Sum_probs=51.8

Q ss_pred             ceeEEEEEcCCCCCHHHHHHHHhhC--CCCCCCCCceeeeeeEEEEECCeEEEEEEEeCCCcccccccccc----CcCCC
Q 036449            5 RFIKCVTVGDGAVGKTCLLISYTSN--TFPTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQEDYNRLRPL----SYRGA   78 (197)
Q Consensus         5 ~~~~i~v~G~~~~GKstli~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~----~~~~~   78 (197)
                      ....+++-|++|+|||++...+...  .+...+ +..   ..  +..++..+        |.+..+.+...    ... .
T Consensus        14 ~~~~~l~~G~~g~gk~~~a~~l~~~i~~~~~~h-~D~---~~--i~~~~~~I--------~Id~IR~i~~~~~~~~~~-~   78 (198)
T d2gnoa2          14 EGISILINGEDLSYPREVSLELPEYVEKFPPKA-SDV---LE--IDPEGENI--------GIDDIRTIKDFLNYSPEL-Y   78 (198)
T ss_dssp             SSEEEEEECSSSSHHHHHHHHHHHHHHTSCCCT-TTE---EE--ECCSSSCB--------CHHHHHHHHHHHTSCCSS-S
T ss_pred             CCceEEEECCCCCCHHHHHHHHHHHHhccccCC-CCE---EE--EeCCcCCC--------CHHHHHHHHHHHhhCccc-C
Confidence            4578999999999999999776642  111111 111   00  00011110        11222211111    111 2


Q ss_pred             cEEEEEEeCCCchhHHHHHHHHHHHHhhhCCCCCEEEEeeCCcc
Q 036449           79 DVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDL  122 (197)
Q Consensus        79 ~~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~~~ivv~nK~D~  122 (197)
                      ..=|+++|-.+.-+.+.. ..+++.++..-++.-++++.+..+.
T Consensus        79 ~~KviIId~ad~l~~~aq-NaLLK~LEEPp~~t~fiLit~~~~~  121 (198)
T d2gnoa2          79 TRKYVIVHDCERMTQQAA-NAFLKALEEPPEYAVIVLNTRRWHY  121 (198)
T ss_dssp             SSEEEEETTGGGBCHHHH-HHTHHHHHSCCTTEEEEEEESCGGG
T ss_pred             CCEEEEEeCccccchhhh-hHHHHHHhCCCCCceeeeccCChhh
Confidence            223455554555555544 6778888766556777777776664

>d1o6za1 c.2.1.5 (A:22-162) Malate dehydrogenase {Archaeon Haloarcula marismortui [TaxId: 2238]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Archaeon Haloarcula marismortui [TaxId: 2238]

Probab=85.20  E-value=1.6  Score=26.69  Aligned_cols=48  Identities=13%  Similarity=0.192  Sum_probs=29.9

Q ss_pred             cCCCcEEEEEEeCCCc--hh-------HHHHHHHHHHHHhhhCCCCCEEEEeeCCcc
Q 036449           75 YRGADVFILAFSLISK--AS-------YENVSKKWIPELKHYAPGVPIILVGTKLDL  122 (197)
Q Consensus        75 ~~~~~~~i~v~d~~~~--~s-------~~~~~~~~~~~i~~~~~~~~~ivv~nK~D~  122 (197)
                      +.++|++++.......  ++       ...+...+.+.+.+..|+.-++++.|=+|.
T Consensus        68 ~~~aDiVvitaG~~~~~g~~R~dl~~~N~~I~~~i~~~i~~~~p~~i~ivvtNPvDv  124 (142)
T d1o6za1          68 TAGSDVVVITAGIPRQPGQTRIDLAGDNAPIMEDIQSSLDEHNDDYISLTTSNPVDL  124 (142)
T ss_dssp             GTTCSEEEECCCCCCCTTCCHHHHHHHHHHHHHHHHHHHHTTCSCCEEEECCSSHHH
T ss_pred             hhhcCEEEEecccccccCCchhhHHHHHHHHHHHHHHHHHhcCCCceEEEecChHHH
Confidence            5689999987665332  11       112335667777777777767777675554

>d1xp8a1 c.37.1.11 (A:15-282) RecA protein, ATPase-domain {Deinococcus radiodurans [TaxId: 1299]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: RecA protein, ATPase-domain
species: Deinococcus radiodurans [TaxId: 1299]

Probab=84.70  E-value=0.3  Score=33.65  Aligned_cols=20  Identities=25%  Similarity=0.297  Sum_probs=16.9

Q ss_pred             EEEEcCCCCCHHHHHHHHhh
Q 036449            9 CVTVGDGAVGKTCLLISYTS   28 (197)
Q Consensus         9 i~v~G~~~~GKstli~~~~~   28 (197)
                      +.+.|++++|||+|+..+..
T Consensus        60 tei~G~~~sGKT~l~l~~~~   79 (268)
T d1xp8a1          60 TEIYGPESGGKTTLALAIVA   79 (268)
T ss_dssp             EEEEESTTSSHHHHHHHHHH
T ss_pred             EEEecCCccchHHHHHHHHH
Confidence            57899999999999966654

>d1i0za1 c.2.1.5 (A:1-160) Lactate dehydrogenase {Human (Homo sapiens), heart isoform (H chain) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Human (Homo sapiens), heart isoform (H chain) [TaxId: 9606]

Probab=84.47  E-value=2  Score=26.82  Aligned_cols=49  Identities=22%  Similarity=0.402  Sum_probs=32.7

Q ss_pred             CcCCCcEEEEEEeCCCc------hhHH---HHHHHHHHHHhhhCCCCCEEEEeeCCcc
Q 036449           74 SYRGADVFILAFSLISK------ASYE---NVSKKWIPELKHYAPGVPIILVGTKLDL  122 (197)
Q Consensus        74 ~~~~~~~~i~v~d~~~~------~s~~---~~~~~~~~~i~~~~~~~~~ivv~nK~D~  122 (197)
                      -+.++|++++.......      +.+.   .+...+.+.+....|+.-++++.|=+|.
T Consensus        85 ~~~~adiVVitAg~~~~~g~tR~~l~~~N~~i~~~i~~~i~~~~p~aiiivvtNPvDv  142 (160)
T d1i0za1          85 VTANSKIVVVTAGVRQQEGESRLNLVQRNVNVFKFIIPQIVKYSPDCIIIVVSNPVDI  142 (160)
T ss_dssp             GGTTCSEEEECCSCCCCTTCCGGGGHHHHHHHHHHHHHHHHHHCTTCEEEECSSSHHH
T ss_pred             hcccccEEEEecCCccccCcchHHHHHHHHHHHHHHHHHHHhcCCCcEEEEeCCchHH
Confidence            36678888887766432      1222   2346667888888788778888887775

>d1fx0a3 c.37.1.11 (A:97-372) Central domain of alpha subunit of F1 ATP synthase {Spinach (Spinacia oleracea), chloroplast [TaxId: 3562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Central domain of alpha subunit of F1 ATP synthase
species: Spinach (Spinacia oleracea), chloroplast [TaxId: 3562]

Probab=84.35  E-value=0.28  Score=33.97  Aligned_cols=22  Identities=27%  Similarity=0.404  Sum_probs=18.4

Q ss_pred             EEEEEcCCCCCHHHHHHHHhhC
Q 036449            8 KCVTVGDGAVGKTCLLISYTSN   29 (197)
Q Consensus         8 ~i~v~G~~~~GKstli~~~~~~   29 (197)
                      |+.++|.+|+|||+|+..+..+
T Consensus        69 r~~Ifg~~g~GKt~l~~~~~~~   90 (276)
T d1fx0a3          69 RELIIGDRQTGKTAVATDTILN   90 (276)
T ss_dssp             BCBEEESSSSSHHHHHHHHHHT
T ss_pred             eEeeccCCCCChHHHHHHHHhh
Confidence            6889999999999999765544

>d1wb9a2 c.37.1.12 (A:567-800) DNA repair protein MutS, the C-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: DNA repair protein MutS, the C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=84.25  E-value=0.35  Score=32.52  Aligned_cols=19  Identities=16%  Similarity=0.237  Sum_probs=16.3

Q ss_pred             EEEEcCCCCCHHHHHHHHh
Q 036449            9 CVTVGDGAVGKTCLLISYT   27 (197)
Q Consensus         9 i~v~G~~~~GKstli~~~~   27 (197)
                      +++-|+..+||||+++.+-
T Consensus        44 ~iiTGpN~~GKSt~lk~i~   62 (234)
T d1wb9a2          44 LIITGPNMGGKSTYMRQTA   62 (234)
T ss_dssp             EEEECCTTSSHHHHHHHHH
T ss_pred             EEEeccCchhhHHHHHHHH
Confidence            6788999999999997653

>d1ewqa2 c.37.1.12 (A:542-765) DNA repair protein MutS, the C-terminal domain {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: DNA repair protein MutS, the C-terminal domain
species: Thermus aquaticus [TaxId: 271]

Probab=83.65  E-value=0.38  Score=32.11  Aligned_cols=19  Identities=21%  Similarity=0.356  Sum_probs=16.4

Q ss_pred             EEEEcCCCCCHHHHHHHHh
Q 036449            9 CVTVGDGAVGKTCLLISYT   27 (197)
Q Consensus         9 i~v~G~~~~GKstli~~~~   27 (197)
                      +++-|+..+||||+++.+-
T Consensus        38 ~iiTGpN~~GKSt~lk~i~   56 (224)
T d1ewqa2          38 VLITGPNMAGKSTFLRQTA   56 (224)
T ss_dssp             EEEESCSSSSHHHHHHHHH
T ss_pred             EEEECCCccccchhhhhhH
Confidence            6899999999999997643

>d1hyha1 c.2.1.5 (A:21-166) L-2-hydroxyisocapronate dehydrogenase, L-HICDH {Lactobacillus confusus [TaxId: 1583]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: L-2-hydroxyisocapronate dehydrogenase, L-HICDH
species: Lactobacillus confusus [TaxId: 1583]

Probab=83.38  E-value=0.9  Score=27.96  Aligned_cols=49  Identities=18%  Similarity=0.227  Sum_probs=31.1

Q ss_pred             CcCCCcEEEEEEeCCC---------c-hh---HHHHHHHHHHHHhhhCCCCCEEEEeeCCcc
Q 036449           74 SYRGADVFILAFSLIS---------K-AS---YENVSKKWIPELKHYAPGVPIILVGTKLDL  122 (197)
Q Consensus        74 ~~~~~~~~i~v~d~~~---------~-~s---~~~~~~~~~~~i~~~~~~~~~ivv~nK~D~  122 (197)
                      .+.++|.+|+......         + +-   ...+...+.+.+.+..|+.-++++.|=.|.
T Consensus        66 ~l~~adiVVitaG~~~~~~~~~g~~R~~l~~~N~~i~~~i~~~i~~~~p~aivivvtNPvD~  127 (146)
T d1hyha1          66 ALADADVVISTLGNIKLQQDNPTGDRFAELKFTSSMVQSVGTNLKESGFHGVLVVISNPVDV  127 (146)
T ss_dssp             GGTTCSEEEECCSCGGGTC-------CTTHHHHHHHHHHHHHHHHHTTCCSEEEECSSSHHH
T ss_pred             HhccccEEEEeccccccccccCCccHHHHHHHHHHHHHHHHHHHhhcCCCeEEEEecCcHHH
Confidence            4678999988755421         1 11   123346667777777788778888776664

>d2b8ta1 c.37.1.24 (A:11-149) Thymidine kinase, TK1, N-terminal domain {Ureaplasma urealyticum [TaxId: 2130]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Type II thymidine kinase
domain: Thymidine kinase, TK1, N-terminal domain
species: Ureaplasma urealyticum [TaxId: 2130]

Probab=82.17  E-value=0.46  Score=29.11  Aligned_cols=17  Identities=29%  Similarity=0.329  Sum_probs=13.2

Q ss_pred             EEEcCCCCCHHH-HHHHH
Q 036449           10 VTVGDGAVGKTC-LLISY   26 (197)
Q Consensus        10 ~v~G~~~~GKst-li~~~   26 (197)
                      +++|+=.||||| |++++
T Consensus         6 ~i~GpMfsGKTteLi~~~   23 (139)
T d2b8ta1           6 FITGPMFAGKTAELIRRL   23 (139)
T ss_dssp             EEECSTTSCHHHHHHHHH
T ss_pred             EEEccccCHHHHHHHHHH
Confidence            568999999999 44444

>d2eyqa3 c.37.1.19 (A:546-778) Transcription-repair coupling factor, TRCF {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: Transcription-repair coupling factor, TRCF
species: Escherichia coli [TaxId: 562]

Probab=82.05  E-value=0.23  Score=33.50  Aligned_cols=25  Identities=20%  Similarity=0.235  Sum_probs=19.5

Q ss_pred             CCceeEEEEEcCCCCCHHHHHHHHh
Q 036449            3 ASRFIKCVTVGDGAVGKTCLLISYT   27 (197)
Q Consensus         3 ~~~~~~i~v~G~~~~GKstli~~~~   27 (197)
                      .++....++.|..|+|||-+.-+..
T Consensus        73 ~~~~~~~LL~GdvGsGKT~V~~~a~   97 (233)
T d2eyqa3          73 QPLAMDRLVCGDVGFGKTEVAMRAA   97 (233)
T ss_dssp             SSSCCEEEEECCCCTTTHHHHHHHH
T ss_pred             ccCccCeEEEcCCCCCcHHHHHHHH
Confidence            4566789999999999997764433

>d1hyqa_ c.37.1.10 (A:) Cell division regulator MinD {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Cell division regulator MinD
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=82.01  E-value=0.47  Score=31.30  Aligned_cols=62  Identities=13%  Similarity=0.094  Sum_probs=36.6

Q ss_pred             EEEEEeCCCccccccccccCcCCCcEEEEEEeCCCchhHHHHHHHHHHHHhhhCCCCCE-EEEeeCCcc
Q 036449           55 NLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPI-ILVGTKLDL  122 (197)
Q Consensus        55 ~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~~~-ivv~nK~D~  122 (197)
                      .+.++|+|+.....  ....+..+|.+++|...+ ..+.... ......++..  +.++ -+|.|+.+.
T Consensus       111 D~viiD~~~~~~~~--~~~~l~~ad~v~~v~~~~-~~~~~~~-~~~~~~~~~~--~~~~~~iv~N~~~~  173 (232)
T d1hyqa_         111 DILLLDAPAGLERS--AVIAIAAAQELLLVVNPE-ISSITDG-LKTKIVAERL--GTKVLGVVVNRITT  173 (232)
T ss_dssp             SEEEEECCSSSSHH--HHHHHHHSSEEEEEECSS-HHHHHHH-HHHHHHHHHH--TCEEEEEEEEEECT
T ss_pred             ceeeecccccccch--hHHHhhhhheeeeecccc-ccchhhh-hhhhhhhhhc--cccccccccccccc
Confidence            35688988864322  222355689888888753 4445444 3344445444  3443 478898764

>d1llda1 c.2.1.5 (A:7-149) Lactate dehydrogenase {Bifidobacterium longum, strain am101-2 [TaxId: 216816]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Bifidobacterium longum, strain am101-2 [TaxId: 216816]

Probab=81.64  E-value=2.5  Score=25.71  Aligned_cols=48  Identities=27%  Similarity=0.408  Sum_probs=29.4

Q ss_pred             cCCCcEEEEEEeCCCch--h-------HHHHHHHHHHHHhhhCCCCCEEEEeeCCcc
Q 036449           75 YRGADVFILAFSLISKA--S-------YENVSKKWIPELKHYAPGVPIILVGTKLDL  122 (197)
Q Consensus        75 ~~~~~~~i~v~d~~~~~--s-------~~~~~~~~~~~i~~~~~~~~~ivv~nK~D~  122 (197)
                      +.++|++++..-.....  +       ...+...+.+.+....|+.-++++.|=+|.
T Consensus        67 ~~daDvVVitaG~~~~~g~~R~dl~~~N~~i~~~i~~~i~~~~p~ai~ivvtNPvDv  123 (143)
T d1llda1          67 CRDADMVVITAGPRQKPGQSRLELVGATVNILKAIMPNLVKVAPNAIYMLITNPVDI  123 (143)
T ss_dssp             GTTCSEEEECCCCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHCTTSEEEECCSSHHH
T ss_pred             hhCCcEEEEecccccCCCCchhhhhhhhHHHHHHHHHHHHhhCCCeEEEEeCCchHH
Confidence            56788888876554321  1       112334556777777777777777776664

>d1wp9a1 c.37.1.19 (A:1-200) putative ATP-dependent RNA helicase PF2015 {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: putative ATP-dependent RNA helicase PF2015
species: Pyrococcus furiosus [TaxId: 2261]

Probab=81.24  E-value=0.54  Score=30.25  Aligned_cols=16  Identities=31%  Similarity=0.530  Sum_probs=13.2

Q ss_pred             EEEEEcCCCCCHHHHH
Q 036449            8 KCVTVGDGAVGKTCLL   23 (197)
Q Consensus         8 ~i~v~G~~~~GKstli   23 (197)
                      +++++++.|+|||.+.
T Consensus        25 n~lv~~pTGsGKT~i~   40 (200)
T d1wp9a1          25 NCLIVLPTGLGKTLIA   40 (200)
T ss_dssp             CEEEECCTTSCHHHHH
T ss_pred             CeEEEeCCCCcHHHHH
Confidence            5789999999999643

>d1yksa1 c.37.1.14 (A:185-324) YFV helicase domain {Yellow fever virus [TaxId: 11089]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RNA helicase
domain: YFV helicase domain
species: Yellow fever virus [TaxId: 11089]

Probab=80.94  E-value=0.25  Score=29.56  Aligned_cols=17  Identities=24%  Similarity=0.108  Sum_probs=13.3

Q ss_pred             eEEEEEcCCCCCHHHHH
Q 036449            7 IKCVTVGDGAVGKTCLL   23 (197)
Q Consensus         7 ~~i~v~G~~~~GKstli   23 (197)
                      -++++.+++|+|||...
T Consensus         8 ~~~il~~~tGsGKT~~~   24 (140)
T d1yksa1           8 MTTVLDFHPGAGKTRRF   24 (140)
T ss_dssp             CEEEECCCTTSSTTTTH
T ss_pred             CcEEEEcCCCCChhHHH
Confidence            46788899999999433