Citrus Sinensis ID: 036452

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240----
Protein Sequence
MAFPNELAAGREELSPKRKMGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVSLIVFSSRGRLYEYSNNSVKSTIDRYKKATADTSNTGSICEANAQFYQQEAAKLRIQISNMQNSNRNMLGESLSGLNFKELKNMETRLEKGISRIRSKKNELLFAEIEYMQKREVDLHNSNQLLRAKIAENERGQQNMNLMQGGSSYEIIQSQPFDSRSYFQVNALQPTNHYPRQDQMALQL
Secondary Structure (PSIPRED)
cccccHHHccccccccccccccccHHHHHccccccccccccccccccHHHHHHHHHHccccEEEEEEcccccccccccccHHHHHHHHHHccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
cccccccccccccccHccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHcccEEEEEEEcccccEEEEEcccHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccEEEccccccccccccccccccc
Coil and Loop (DISEMBL)
mafpnelaagreelspkrkmgrgkiEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVSLIVFssrgrlyeysnnsvKSTIDRYKKatadtsntgsiCEANAQFYQQEAAKLRIQISNMqnsnrnmlgeslsglnfkELKNMETRLEKGISRIRSKKNELLFAEIEYMQKREVDLHNSNQLLRAKIAENERgqqnmnlmqggssyeiiqsqpfdsrsyfqvnalqptnhyprqdqMALQL
Flexible Loop (DISEMBL)
mafpnelaagreelspkrkmgrgkieikrienttnrqvtfcKRRNGLLKKAYELSVLCDAEVSLIVfssrgrlyeysnnsvkstIDRYKKATADTSNTGSICEANAQFYQQEAAKLRIQISNMQNSNRNMLGESLSGLNFKELKNMETRLEkgisrirskknELLFAEIEYMQKREVDLHNSNQLLRAKIAENERGQQNMNLMQGGSSYEIIQSQPFDSRSYFQVNALqptnhyprqdqmalql
Low Complexity Region (SEG)
MAFPNELAAGREELSPKRKMGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVSLIVFSSRGRLYEYSNNSVKSTIDRYKKATADTSNTGSICEANAQFYQQEAAKLRIQISNMQNSNRNMLGESLSGLNFKELKNMETRLEKGISRIRSKKNELLFAEIEYMQKREVDLHNSNQLLRAKIAENERGQQNMNLMQGGSSYEIIQSQPFDSRSYFQVNALQPTNHYPRQDQMALQL
Disordered region (IsUnstruct)
**************************IKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVSLIVFSSRGRLYEYSNNSVKSTIDRY***********SICEANAQFYQQEAAKLRI********************************************ELLFAEIEYMQKR*********************************************************************
Disordered Region (DISOPRED)
*************************EIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVSLIVFSSRGRLYEYSNNSVKSTIDRYK********************QQEAAKLRIQISNMQNSNRNMLGESLSGLNFKELKNMETRLEKGISRIRSKKNELLFAEIEYMQKREVDLHNSNQLLRAKI******************************************************
Disordered Region (DISEMBL)
********AGREELSPKRKMGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVSLIVFSSRGRLYEYSNNSVKSTIDRYKKATADTSNTGSICEANAQFYQQEAAKLRIQISNMQNSNRNMLGESLSGLNFKELKNMETRLEKGISRIRSKKNELLFAEIEYMQKREVDLHNSNQLLRAKIAENERGQQNMNLMQGGSSYEIIQSQPFDSRSYFQVNALQPTNHYPR********
Disordered Region (DISPRO)
***********************KIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVSLIVFSSRGRLYEYSNNSVKSTIDRYKKATADTSNTGSICEANAQFYQQEAAKLRIQISNMQNSNRNMLGESLSGLNFKELKNMETRLEKGISRIRSKKNELLFAEIEYMQKREVDLHNSNQLLRAKIAENERGQ*N*N*MQGGSSYEIIQSQPFDSRSYFQVNALQP**************
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MAFPNELAAGREELSPKRKMGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVSLIVFSSRGRLYEYSNNSVKSTIDRYKKATADTSNTGSICEANxxxxxxxxxxxxxxxxxxxxxNRNMLGESLSGLNFKExxxxxxxxxxxxxxxxxxxxxLLFAEIEYMQKREVDLHNSNQLLRAKIAENERGQQNMNLMQGGSSYEIIQSQPFDSRSYFQVNALQPTNHYPRQDQMALQL
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	244	2.2.26 [Sep-21-2011]
Q40885	242	Floral homeotic protein A	N/A	no	0.983	0.991	0.746	1e-103
Q40872	242	Floral homeotic protein A	N/A	no	0.946	0.954	0.770	1e-102
Q40168	248	Floral homeotic protein A	N/A	no	0.987	0.971	0.728	1e-101
Q43585	248	Floral homeotic protein A	N/A	no	0.987	0.971	0.736	1e-101
P17839	252	Floral homeotic protein A	yes	no	0.987	0.956	0.712	2e-98
Q01540	252	Floral homeotic protein A	N/A	no	0.987	0.956	0.716	3e-96
Q40704	236	MADS-box transcription fa	yes	no	0.922	0.953	0.659	1e-84
P29381	248	Agamous-like MADS-box pro	no	no	0.926	0.911	0.663	2e-82
P29385	246	Agamous-like MADS-box pro	no	no	0.979	0.971	0.622	4e-79
Q2V0P1	272	MADS-box transcription fa	yes	no	0.901	0.808	0.630	1e-78

>sp|Q40885|AG_PETHY Floral homeotic protein AGAMOUS OS=Petunia hybrida GN=AG1 PE=1 SV=1

 Score =  373 bits (958), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 183/245 (74%), Positives = 213/245 (86%), Gaps = 5/245 (2%)

Query: 1   MAFPNELAAGREELSPKRKMGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDA 60
           M F ++L     E+SP+RK+GRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDA
Sbjct: 1   MEFQSDLT---REISPQRKLGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDA 57

Query: 61  EVSLIVFSSRGRLYEYSNNSVKSTIDRYKKATADTSNTGSICEANAQFYQQEAAKLRIQI 120
           EV+LIVFSSRGRLYEY+NNSVK+TI+RYKKA +D+SNTGSI EANAQ+YQQEA+KLR QI
Sbjct: 58  EVALIVFSSRGRLYEYANNSVKATIERYKKACSDSSNTGSIAEANAQYYQQEASKLRAQI 117

Query: 121 SNMQNSNRNMLGESLSGLNFKELKNMETRLEKGISRIRSKKNELLFAEIEYMQKREVDLH 180
            N+QN NRN LGESL+ LN ++L+N+E ++EKGIS+IR+KKNELLFAEIEYMQKRE+DLH
Sbjct: 118 GNLQNQNRNFLGESLAALNLRDLRNLEQKIEKGISKIRAKKNELLFAEIEYMQKREIDLH 177

Query: 181 NSNQLLRAKIAENERGQQNMNLMQGGSSYEIIQS-QPFDSRSYFQVNALQPTNHYPRQDQ 239
           N+NQ LRAKIAE ER QQ MNLM G SSY+++   Q FD+R+Y QVN LQ  NHYPRQDQ
Sbjct: 178 NNNQYLRAKIAETERSQQ-MNLMPGSSSYDLVPPQQSFDARNYLQVNGLQTNNHYPRQDQ 236

Query: 240 MALQL 244
             LQL
Sbjct: 237 PPLQL 241

Probable transcription factor involved in regulating genes that determines stamen and carpel development in wild-type flowers.
Petunia hybrida (taxid: 4102)

>sp|Q40872|AG_PANGI Floral homeotic protein AGAMOUS OS=Panax ginseng GN=AG2 PE=2 SV=1

 Score =  372 bits (956), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 178/231 (77%), Positives = 203/231 (87%)

Query: 14  LSPKRKMGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVSLIVFSSRGRL 73
           LSP+RK+GRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEV+LIVFS+RGRL
Sbjct: 11  LSPQRKLGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSTRGRL 70

Query: 74  YEYSNNSVKSTIDRYKKATADTSNTGSICEANAQFYQQEAAKLRIQISNMQNSNRNMLGE 133
           YEY+NNSVK TI+RYKKA  D+ NT S+ EANAQFYQQEA+KLR +IS++Q +NRNM+GE
Sbjct: 71  YEYANNSVKGTIERYKKACTDSPNTSSVSEANAQFYQQEASKLRQEISSIQKNNRNMMGE 130

Query: 134 SLSGLNFKELKNMETRLEKGISRIRSKKNELLFAEIEYMQKREVDLHNSNQLLRAKIAEN 193
           SL  L  ++LK +ET+LEKGISRIRSKKNELLFAEIEYMQK+E+DLHN+NQ LRAKIAEN
Sbjct: 131 SLGSLTVRDLKGLETKLEKGISRIRSKKNELLFAEIEYMQKKEIDLHNNNQYLRAKIAEN 190

Query: 194 ERGQQNMNLMQGGSSYEIIQSQPFDSRSYFQVNALQPTNHYPRQDQMALQL 244
           ER QQ+MNLM G S YE+   Q FD R+Y Q+N LQP NHY RQDQ ALQL
Sbjct: 191 ERAQQHMNLMPGSSDYELAPPQSFDGRNYIQLNGLQPNNHYSRQDQTALQL 241

Probable transcription factor involved in regulating genes that determines stamen and carpel development in wild-type flowers.

Panax ginseng (taxid: 4054)

>sp|Q40168|AG_SOLLC Floral homeotic protein AGAMOUS OS=Solanum lycopersicum GN=AG1 PE=2 SV=1

 Score =  367 bits (941), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 182/250 (72%), Positives = 213/250 (85%), Gaps = 9/250 (3%)

Query: 1   MAFPNELAAGREELSPKRKMGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDA 60
           M F ++L     E+SP+RK+GRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDA
Sbjct: 1   MDFQSDLT---REISPQRKLGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDA 57

Query: 61  EVSLIVFSSRGRLYEYSNNSVKSTIDRYKKATADTSNTGSICEANAQFYQQEAAKLRIQI 120
           EV+L+VFS+RGRLYEY+NNSVK+TI+RYKKA +D+SNTGS+ EANAQ+YQQEA+KLR QI
Sbjct: 58  EVALVVFSNRGRLYEYANNSVKATIERYKKACSDSSNTGSVSEANAQYYQQEASKLRAQI 117

Query: 121 SNMQNSNRNMLGESLSGLNFKELKNMETRLEKGISRIRSKKNELLFAEIEYMQKREVDLH 180
            N+ N NRNM+GE+L+G+  KELKN+E R+EKGIS+IRSKKNELLFAEIEYMQKREVDLH
Sbjct: 118 GNLMNQNRNMMGEALAGMKLKELKNLEQRIEKGISKIRSKKNELLFAEIEYMQKREVDLH 177

Query: 181 NSNQLLRAKIAENERGQ---QNMNLMQGGSS--YEII-QSQPFDSRSYFQVNALQPTNHY 234
           N+NQ LRAKIAE ER Q   Q MNLM G SS  +E++   Q FD+R+Y QVN LQ  NHY
Sbjct: 178 NNNQYLRAKIAETERAQHQHQQMNLMPGSSSNYHELVPPPQQFDTRNYLQVNGLQTNNHY 237

Query: 235 PRQDQMALQL 244
           PRQDQ  +QL
Sbjct: 238 PRQDQPPIQL 247

Probable transcription factor involved in regulating genes that determines stamen and carpel development in wild-type flowers.

Solanum lycopersicum (taxid: 4081)

>sp|Q43585|AG_TOBAC Floral homeotic protein AGAMOUS OS=Nicotiana tabacum GN=AG1 PE=2 SV=1

 Score =  366 bits (939), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 184/250 (73%), Positives = 213/250 (85%), Gaps = 9/250 (3%)

Query: 1   MAFPNELAAGREELSPKRKMGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDA 60
           M F ++L     E+SP+RK+GRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDA
Sbjct: 1   MDFQSDLT---REISPQRKLGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDA 57

Query: 61  EVSLIVFSSRGRLYEYSNNSVKSTIDRYKKATADTSNTGSICEANAQFYQQEAAKLRIQI 120
           EV+LIVFSSRGRLYEY+NNSVK+TI+RYKKA +D+SNTGSI EANAQ+YQQEA+KLR QI
Sbjct: 58  EVALIVFSSRGRLYEYANNSVKATIERYKKACSDSSNTGSISEANAQYYQQEASKLRAQI 117

Query: 121 SNMQNSNRNMLGESLSGLNFKELKNMETRLEKGISRIRSKKNELLFAEIEYMQKREVDLH 180
            N+QN NRNMLGESL+ L+ ++LKN+E ++EKGIS+IRSKKNELLFAEIEYMQKRE+DLH
Sbjct: 118 GNLQNQNRNMLGESLAALSLRDLKNLEQKIEKGISKIRSKKNELLFAEIEYMQKREIDLH 177

Query: 181 NSNQLLRAKIAENERG-----QQNMNLMQGGSSYEII-QSQPFDSRSYFQVNALQPTNHY 234
           N+NQ LRAKIAE ER      QQ MNLM G SSYE++     FD+R+Y QVN LQ  NHY
Sbjct: 178 NNNQYLRAKIAETERAQQQQQQQQMNLMPGSSSYELVPPPHQFDTRNYLQVNGLQTNNHY 237

Query: 235 PRQDQMALQL 244
            RQDQ +LQL
Sbjct: 238 TRQDQPSLQL 247

Probable transcription factor involved in regulating genes that determines stamen and carpel development in wild-type flowers.

Nicotiana tabacum (taxid: 4097)

>sp|P17839|AG_ARATH Floral homeotic protein AGAMOUS OS=Arabidopsis thaliana GN=AG PE=1 SV=2

 Score =  358 bits (918), Expect = 2e-98,   Method: Compositional matrix adjust.
 Identities = 181/254 (71%), Positives = 212/254 (83%), Gaps = 13/254 (5%)

Query: 1   MAFPNELAAGREELSPKRKMGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDA 60
           MA+ +EL     + SP RK GRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDA
Sbjct: 1   MAYQSELGG---DSSPLRKSGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDA 57

Query: 61  EVSLIVFSSRGRLYEYSNNSVKSTIDRYKKATADTSNTGSICEANAQFYQQEAAKLRIQI 120
           EV+LIVFSSRGRLYEYSNNSVK TI+RYKKA +D SNTGS+ E NAQ+YQQE+AKLR QI
Sbjct: 58  EVALIVFSSRGRLYEYSNNSVKGTIERYKKAISDNSNTGSVAEINAQYYQQESAKLRQQI 117

Query: 121 SNMQNSNRNMLGESLSGLNFKELKNMETRLEKGISRIRSKKNELLFAEIEYMQKREVDLH 180
            ++QNSNR ++GE++  ++ KEL+N+E RLE+ I+RIRSKKNELLF+EI+YMQKREVDLH
Sbjct: 118 ISIQNSNRQLMGETIGSMSPKELRNLEGRLERSITRIRSKKNELLFSEIDYMQKREVDLH 177

Query: 181 NSNQLLRAKIAENERGQQNMNLMQGGSSYEII------QSQPFDSRSYFQVNALQPTNHY 234
           N NQ+LRAKIAENER   +++LM GGS+YE +      QSQPFDSR+YFQV ALQP NH+
Sbjct: 178 NDNQILRAKIAENERNNPSISLMPGGSNYEQLMPPPQTQSQPFDSRNYFQVAALQPNNHH 237

Query: 235 ----PRQDQMALQL 244
                RQDQ ALQL
Sbjct: 238 YSSAGRQDQTALQL 251

Probable transcription factor involved in the control of organ identity during the early development of flowers. Is required for normal development of stamens and carpels in the wild-type flower. Plays a role in maintaining the determinacy of the floral meristem. Acts as C class cadastral protein by repressing the A class floral homeotic genes like APETALA1. Forms an heterodimer via the K-box domain with either SEPALATTA1/AGL2, SEPALATTA2/AGL4, SEPALLATA3/AGL9 or AGL6 that could be involved in genes regulation during floral meristem development.

Arabidopsis thaliana (taxid: 3702)

>sp|Q01540|AG_BRANA Floral homeotic protein AGAMOUS OS=Brassica napus GN=AG1 PE=2 SV=1

 Score =  351 bits (900), Expect = 3e-96,   Method: Compositional matrix adjust.
 Identities = 182/254 (71%), Positives = 211/254 (83%), Gaps = 13/254 (5%)

Query: 1   MAFPNELAAGREELSPKRKMGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDA 60
           MA+  EL     E SP+RK GRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDA
Sbjct: 1   MAYQMELGG---ESSPQRKAGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDA 57

Query: 61  EVSLIVFSSRGRLYEYSNNSVKSTIDRYKKATADTSNTGSICEANAQFYQQEAAKLRIQI 120
           EV+LIVFSSRGRLYEYSNNSVK TI+RYKKA +D SNTGS+ E NAQ+YQQE+AKLR QI
Sbjct: 58  EVALIVFSSRGRLYEYSNNSVKGTIERYKKAISDNSNTGSVAEINAQYYQQESAKLRQQI 117

Query: 121 SNMQNSNRNMLGESLSGLNFKELKNMETRLEKGISRIRSKKNELLFAEIEYMQKREVDLH 180
            ++QNSNR ++GE++  ++ KEL+N+E RL++ ++RIRSKKNELLFAEI+YMQKREVDLH
Sbjct: 118 ISIQNSNRQLMGETIGSMSPKELRNLEGRLDRSVNRIRSKKNELLFAEIDYMQKREVDLH 177

Query: 181 NSNQLLRAKIAENERGQQNMNLMQGGSSYEII------QSQPFDSRSYFQVNALQPTNHY 234
           N NQLLRAKIAENER   +M+LM GGS+YE I      Q QPFDSR+YFQV ALQP NH+
Sbjct: 178 NDNQLLRAKIAENERNNPSMSLMPGGSNYEQIMPPPQTQPQPFDSRNYFQVAALQPNNHH 237

Query: 235 ----PRQDQMALQL 244
                R+DQ ALQL
Sbjct: 238 YSSAGREDQTALQL 251

Probable transcription factor involved in regulating genes that determines stamen and carpel development in wild-type flowers.

Brassica napus (taxid: 3708)

>sp|Q40704|MADS3_ORYSJ MADS-box transcription factor 3 OS=Oryza sativa subsp. japonica GN=MADS3 PE=2 SV=1

 Score =  313 bits (801), Expect = 1e-84,   Method: Compositional matrix adjust.
 Identities = 151/229 (65%), Positives = 193/229 (84%), Gaps = 4/229 (1%)

Query: 20  MGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVSLIVFSSRGRLYEYSNN 79
           MGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEV+LIVFSSRGRLYEY+NN
Sbjct: 1   MGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYANN 60

Query: 80  SVKSTIDRYKKATADTSNTGSICEANAQFYQQEAAKLRIQISNMQNSN-RNMLGESLSGL 138
           SVKST++RYKKA +DTSN+G++ E NAQ YQQE++KLR QIS++QN+N R ++G+S++ +
Sbjct: 61  SVKSTVERYKKANSDTSNSGTVAEVNAQHYQQESSKLRQQISSLQNANSRTIVGDSINTM 120

Query: 139 NFKELKNMETRLEKGISRIRSKKNELLFAEIEYMQKREVDLHNSNQLLRAKIAENERGQQ 198
           + ++LK +E RLEKGI++IR++KNELL+AE+EYMQKREV+L N N  LR+K+ ENERGQQ
Sbjct: 121 SLRDLKQVENRLEKGIAKIRARKNELLYAEVEYMQKREVELQNDNMYLRSKVVENERGQQ 180

Query: 199 NMNLMQGGSS--YEIIQSQPFDSRSYFQVNALQPTNHYPRQDQ-MALQL 244
            +N+M   S+  Y+ + + P+DSR++ QVN +Q   HY  Q Q   LQL
Sbjct: 181 PLNMMGAASTSEYDHMVNNPYDSRNFLQVNIMQQPQHYAHQLQPTTLQL 229

Probable transcription factor involved in the development of floral organs. Acts as C-class protein in association with MADS58. Involved in the control of lodicule number (whorl 2), stamen specification (whorl 3) and floral meristem determinacy (whorl 4), but not in the regulation of carpel morphogenesis. Plays a more predominant role in controlling lodicule development and in specifying stamen identity than MADS58.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|P29381|AGL1_ARATH Agamous-like MADS-box protein AGL1 OS=Arabidopsis thaliana GN=AGL1 PE=1 SV=1

 Score =  305 bits (781), Expect = 2e-82,   Method: Compositional matrix adjust.
 Identities = 156/235 (66%), Positives = 189/235 (80%), Gaps = 9/235 (3%)

Query: 18  RKMGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVSLIVFSSRGRLYEYS 77
           +K+GRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEV+L++FS+RGRLYEY+
Sbjct: 14  KKLGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALVIFSTRGRLYEYA 73

Query: 78  NNSVKSTIDRYKKATADTSNTGSICEANAQFYQQEAAKLRIQISNMQNSNRNMLGESLSG 137
           NNSV+ TI+RYKKA +D  N  S+ EAN Q+YQQEA+KLR QI ++QNSNR+++GESL  
Sbjct: 74  NNSVRGTIERYKKACSDAVNPPSVTEANTQYYQQEASKLRRQIRDIQNSNRHIVGESLGS 133

Query: 138 LNFKELKNMETRLEKGISRIRSKKNELLFAEIEYMQKREVDLHNSNQLLRAKIAENER-- 195
           LNFKELKN+E RLEKGISR+RSKKNELL AEIEYMQKRE++L ++N  LRAKIAE  R  
Sbjct: 134 LNFKELKNLEGRLEKGISRVRSKKNELLVAEIEYMQKREMELQHNNMYLRAKIAEGARLN 193

Query: 196 -GQQNMNLMQGGSSYEI-----IQSQPFDSRSYFQVNALQPTNHYPRQDQMALQL 244
             QQ  +++QG + YE       QSQ ++ R+Y  VN L+P   +  QDQ  LQL
Sbjct: 194 PDQQESSVIQGTTVYESGVSSHDQSQHYN-RNYIPVNLLEPNQQFSGQDQPPLQL 247

Probable transcription factor.

Arabidopsis thaliana (taxid: 3702)

>sp|P29385|AGL5_ARATH Agamous-like MADS-box protein AGL5 OS=Arabidopsis thaliana GN=AGL5 PE=1 SV=1

 Score =  294 bits (752), Expect = 4e-79,   Method: Compositional matrix adjust.
 Identities = 152/244 (62%), Positives = 185/244 (75%), Gaps = 5/244 (2%)

Query: 6   ELAAGREELSPKRKMGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVSLI 65
           E  A  E     +K+GRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEV+L+
Sbjct: 2   EGGASNEVAESSKKIGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALV 61

Query: 66  VFSSRGRLYEYSNNSVKSTIDRYKKATADTSNTGSICEANAQFYQQEAAKLRIQISNMQN 125
           +FS+RGRLYEY+NNSV+ TI+RYKKA +D  N  +I EAN Q+YQQEA+KLR QI ++QN
Sbjct: 62  IFSTRGRLYEYANNSVRGTIERYKKACSDAVNPPTITEANTQYYQQEASKLRRQIRDIQN 121

Query: 126 SNRNMLGESLSGLNFKELKNMETRLEKGISRIRSKKNELLFAEIEYMQKREVDLHNSNQL 185
            NR++LGESL  LNFKELKN+E+RLEKGISR+RSKK+E+L AEIEYMQKRE++L N N  
Sbjct: 122 LNRHILGESLGSLNFKELKNLESRLEKGISRVRSKKHEMLVAEIEYMQKREIELQNDNMY 181

Query: 186 LRAKIAENER-GQQNMNLMQGGSSYEIIQSQPFDS----RSYFQVNALQPTNHYPRQDQM 240
           LR+KI E     QQ  +++  G+ YE   +    S    R+Y  VN L+P  +   QDQ 
Sbjct: 182 LRSKITERTGLQQQESSVIHQGTVYESGVTSSHQSGQYNRNYIAVNLLEPNQNSSNQDQP 241

Query: 241 ALQL 244
            LQL
Sbjct: 242 PLQL 245

Probable transcription factor.

Arabidopsis thaliana (taxid: 3702)

>sp|Q2V0P1|MAD58_ORYSJ MADS-box transcription factor 58 OS=Oryza sativa subsp. japonica GN=MADS58 PE=2 SV=1

 Score =  292 bits (748), Expect = 1e-78,   Method: Compositional matrix adjust.
 Identities = 140/222 (63%), Positives = 182/222 (81%), Gaps = 2/222 (0%)

Query: 19  KMG-RGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVSLIVFSSRGRLYEYS 77
           K+G RGKIEIKRIENTTNRQVTFCKRR+GLLKKAYELSVLCDAEV+L+VFSSRGRLYEYS
Sbjct: 41  KIGSRGKIEIKRIENTTNRQVTFCKRRSGLLKKAYELSVLCDAEVALVVFSSRGRLYEYS 100

Query: 78  NNSVKSTIDRYKKATADTSNTGSICEANAQFYQQEAAKLRIQISNMQNSNRNMLGESLSG 137
           NNSVK TI+RYKKA +DTSN  ++ E NAQ YQQEAAKL+ QI+N+QNSNR ++G++++ 
Sbjct: 101 NNSVKETIERYKKANSDTSNASTVAEINAQHYQQEAAKLKQQITNLQNSNRTLVGDNITT 160

Query: 138 LNFKELKNMETRLEKGISRIRSKKNELLFAEIEYMQKREVDLHNSNQLLRAKIAENERGQ 197
           +N +ELK +E RL+KG+ +IR++KNELL AEIEYMQ+RE +L N N  L++K+AE+ERG 
Sbjct: 161 MNHRELKQLEGRLDKGLGKIRARKNELLCAEIEYMQRRETELQNDNMYLKSKVAESERGL 220

Query: 198 QNMNLMQGGSSYEIIQSQ-PFDSRSYFQVNALQPTNHYPRQD 238
           Q +N+M   S+ E +Q+   +D R++ Q N +    +YP Q+
Sbjct: 221 QTVNMMGSASTSEYVQNMIHYDPRNFLQFNIMHQPQYYPEQE 262

Probable transcription factor involved in the development of floral organs. Acts as a C-class protein in association with MADS3. Involved in the control of lodicule number (whorl 2), stamen specification (whorl 3), floral meristem determinacy and regulation of the carpel morphogenesis (whorl 4). Plays a more predominant role in floral meristem determinacy than MADS3.

Oryza sativa subsp. japonica (taxid: 39947)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	244
310657309	246	AGAMOUS-like protein [Citrus sinensis]	1.0	0.991	1.0	1e-139
116078095	245	MADS-box protein [Citrus unshiu]	1.0	0.995	0.991	1e-139
76152076	241	AGAMOUS-like protein [Theobroma cacao]	0.983	0.995	0.819	1e-114
326910844	241	AGAMOUS-like protein [Jatropha curcas]	0.983	0.995	0.827	1e-114
354683682	242	AGAMOUS-like protein [Mangifera indica]	0.987	0.995	0.840	1e-109
358357314	241	MADS1 [Corylus heterophylla]	0.946	0.958	0.818	1e-108
224076916	241	predicted protein [Populus trichocarpa]	0.950	0.962	0.818	1e-108
354683068	255	AGAMOUS4 [Passiflora edulis]	0.950	0.909	0.824	1e-107
224116496	238	predicted protein [Populus trichocarpa]	0.967	0.991	0.8	1e-107
4103757	242	MADS1 [Corylus avellana]	0.946	0.954	0.810	1e-106

>gi|310657309|gb|ADP02394.1| AGAMOUS-like protein [Citrus sinensis]

 Score =  500 bits (1288), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 244/244 (100%), Positives = 244/244 (100%)

Query: 1   MAFPNELAAGREELSPKRKMGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDA 60
           MAFPNELAAGREELSPKRKMGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDA
Sbjct: 1   MAFPNELAAGREELSPKRKMGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDA 60

Query: 61  EVSLIVFSSRGRLYEYSNNSVKSTIDRYKKATADTSNTGSICEANAQFYQQEAAKLRIQI 120
           EVSLIVFSSRGRLYEYSNNSVKSTIDRYKKATADTSNTGSICEANAQFYQQEAAKLRIQI
Sbjct: 61  EVSLIVFSSRGRLYEYSNNSVKSTIDRYKKATADTSNTGSICEANAQFYQQEAAKLRIQI 120

Query: 121 SNMQNSNRNMLGESLSGLNFKELKNMETRLEKGISRIRSKKNELLFAEIEYMQKREVDLH 180
           SNMQNSNRNMLGESLSGLNFKELKNMETRLEKGISRIRSKKNELLFAEIEYMQKREVDLH
Sbjct: 121 SNMQNSNRNMLGESLSGLNFKELKNMETRLEKGISRIRSKKNELLFAEIEYMQKREVDLH 180

Query: 181 NSNQLLRAKIAENERGQQNMNLMQGGSSYEIIQSQPFDSRSYFQVNALQPTNHYPRQDQM 240
           NSNQLLRAKIAENERGQQNMNLMQGGSSYEIIQSQPFDSRSYFQVNALQPTNHYPRQDQM
Sbjct: 181 NSNQLLRAKIAENERGQQNMNLMQGGSSYEIIQSQPFDSRSYFQVNALQPTNHYPRQDQM 240

Query: 241 ALQL 244
           ALQL
Sbjct: 241 ALQL 244

Source: Citrus sinensis

Species: Citrus sinensis

Genus: Citrus

Family: Rutaceae

Order: Sapindales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|116078095|dbj|BAF34911.1| MADS-box protein [Citrus unshiu]

 Score =  499 bits (1284), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 242/244 (99%), Positives = 244/244 (100%)

Query: 1   MAFPNELAAGREELSPKRKMGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDA 60
           MAFPNELAAGREELSPKRKMGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDA
Sbjct: 1   MAFPNELAAGREELSPKRKMGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDA 60

Query: 61  EVSLIVFSSRGRLYEYSNNSVKSTIDRYKKATADTSNTGSICEANAQFYQQEAAKLRIQI 120
           E++LIVFSSRGRLYEYSNNSVKSTIDRYKKATADTSNTGSICEANAQFYQQEAAKLRIQI
Sbjct: 61  EIALIVFSSRGRLYEYSNNSVKSTIDRYKKATADTSNTGSICEANAQFYQQEAAKLRIQI 120

Query: 121 SNMQNSNRNMLGESLSGLNFKELKNMETRLEKGISRIRSKKNELLFAEIEYMQKREVDLH 180
           SNMQNSNRNMLGESLSGLNFKELKNMETRLEKGISRIRSKKNELLFAEIEYMQKREVDLH
Sbjct: 121 SNMQNSNRNMLGESLSGLNFKELKNMETRLEKGISRIRSKKNELLFAEIEYMQKREVDLH 180

Query: 181 NSNQLLRAKIAENERGQQNMNLMQGGSSYEIIQSQPFDSRSYFQVNALQPTNHYPRQDQM 240
           NSNQLLRAKIAENERGQQNMNLMQGGSSYEIIQSQPFDSRSYFQVNALQPTNHYPRQDQM
Sbjct: 181 NSNQLLRAKIAENERGQQNMNLMQGGSSYEIIQSQPFDSRSYFQVNALQPTNHYPRQDQM 240

Query: 241 ALQL 244
           ALQL
Sbjct: 241 ALQL 244

Source: Citrus unshiu

Species: Citrus unshiu

Genus: Citrus

Family: Rutaceae

Order: Sapindales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|76152076|gb|ABA39727.1| AGAMOUS-like protein [Theobroma cacao]

 Score =  416 bits (1070), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 200/244 (81%), Positives = 223/244 (91%), Gaps = 4/244 (1%)

Query: 1   MAFPNELAAGREELSPKRKMGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDA 60
           M +PNE      E SP++KMGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDA
Sbjct: 1   MVYPNESC----ETSPQKKMGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDA 56

Query: 61  EVSLIVFSSRGRLYEYSNNSVKSTIDRYKKATADTSNTGSICEANAQFYQQEAAKLRIQI 120
           EV+LIVFSSRGRLYEY+NNSVK+TI+RYKK  AD+SNTGS+ EANAQFYQQEAAKLR+QI
Sbjct: 57  EVALIVFSSRGRLYEYANNSVKATIERYKKTCADSSNTGSVSEANAQFYQQEAAKLRVQI 116

Query: 121 SNMQNSNRNMLGESLSGLNFKELKNMETRLEKGISRIRSKKNELLFAEIEYMQKREVDLH 180
            N+QNSNR+MLGESLS L  K+L+++E RLEKGISRIRSKKNELLFAEIEYMQKRE+DLH
Sbjct: 117 GNLQNSNRHMLGESLSALPMKDLRSLENRLEKGISRIRSKKNELLFAEIEYMQKREIDLH 176

Query: 181 NSNQLLRAKIAENERGQQNMNLMQGGSSYEIIQSQPFDSRSYFQVNALQPTNHYPRQDQM 240
           N+NQLLRAKIAENER QQN+NLM GGS++EI+ SQPFDSR+YFQVNALQP NHYP QDQM
Sbjct: 177 NNNQLLRAKIAENERKQQNINLMPGGSNFEIMHSQPFDSRNYFQVNALQPANHYPHQDQM 236

Query: 241 ALQL 244
           ALQL
Sbjct: 237 ALQL 240

Source: Theobroma cacao

Species: Theobroma cacao

Genus: Theobroma

Family: Malvaceae

Order: Malvales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|326910844|gb|AEA11211.1| AGAMOUS-like protein [Jatropha curcas]

 Score =  415 bits (1067), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 202/244 (82%), Positives = 225/244 (92%), Gaps = 4/244 (1%)

Query: 1   MAFPNELAAGREELSPKRKMGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDA 60
           MA+P++      E SP+R+MGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDA
Sbjct: 1   MAYPSD----SRETSPQRRMGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDA 56

Query: 61  EVSLIVFSSRGRLYEYSNNSVKSTIDRYKKATADTSNTGSICEANAQFYQQEAAKLRIQI 120
           EV+LIVFSSRGRLYEY+NNSVKSTI+RYKKA AD+SNTGS+ EANAQFYQQ+AAKLR QI
Sbjct: 57  EVALIVFSSRGRLYEYANNSVKSTIERYKKACADSSNTGSVSEANAQFYQQQAAKLRDQI 116

Query: 121 SNMQNSNRNMLGESLSGLNFKELKNMETRLEKGISRIRSKKNELLFAEIEYMQKREVDLH 180
           S +Q S RNMLGESL G+N K+L+ +E+RLEKGISRIRSKKNELLFAEIEYMQKRE+DLH
Sbjct: 117 SGLQKSIRNMLGESLGGINPKDLRGLESRLEKGISRIRSKKNELLFAEIEYMQKREIDLH 176

Query: 181 NSNQLLRAKIAENERGQQNMNLMQGGSSYEIIQSQPFDSRSYFQVNALQPTNHYPRQDQM 240
           N+NQLLRAKIAENER QQNMNLM GG +YEIIQSQPFD+R+YFQVNALQPTNHYP+QDQM
Sbjct: 177 NNNQLLRAKIAENERKQQNMNLMPGGGNYEIIQSQPFDNRNYFQVNALQPTNHYPQQDQM 236

Query: 241 ALQL 244
           ALQL
Sbjct: 237 ALQL 240

Source: Jatropha curcas

Species: Jatropha curcas

Genus: Jatropha

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|354683682|gb|AER34988.1| AGAMOUS-like protein [Mangifera indica]

 Score =  401 bits (1030), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 205/244 (84%), Positives = 223/244 (91%), Gaps = 3/244 (1%)

Query: 1   MAFPNELAAGREELSPKRKMGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDA 60
           MAFPNE    RE+   ++K+GRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDA
Sbjct: 1   MAFPNE---SREDSPREKKIGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDA 57

Query: 61  EVSLIVFSSRGRLYEYSNNSVKSTIDRYKKATADTSNTGSICEANAQFYQQEAAKLRIQI 120
           EV+LIVFSSRGRLYEYSNNSVK+TI+RYKKA+AD+S+  S+  ANAQFYQQEA KLR QI
Sbjct: 58  EVALIVFSSRGRLYEYSNNSVKTTIERYKKASADSSHAASVSGANAQFYQQEANKLRQQI 117

Query: 121 SNMQNSNRNMLGESLSGLNFKELKNMETRLEKGISRIRSKKNELLFAEIEYMQKREVDLH 180
            N+QNSNRNMLGESL  L+ KELKN+ETRLEKGISRIRSKKNELLFAEIEYMQKRE+DLH
Sbjct: 118 RNLQNSNRNMLGESLGALSVKELKNLETRLEKGISRIRSKKNELLFAEIEYMQKREIDLH 177

Query: 181 NSNQLLRAKIAENERGQQNMNLMQGGSSYEIIQSQPFDSRSYFQVNALQPTNHYPRQDQM 240
           N+NQLLRAKIAENERGQQNMNL+ GG SYEIIQSQPFDSR +FQVNALQPTNHY RQDQM
Sbjct: 178 NNNQLLRAKIAENERGQQNMNLIAGGGSYEIIQSQPFDSRDFFQVNALQPTNHYARQDQM 237

Query: 241 ALQL 244
           ALQL
Sbjct: 238 ALQL 241

Source: Mangifera indica

Species: Mangifera indica

Genus: Mangifera

Family: Anacardiaceae

Order: Sapindales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|358357314|gb|AEU08497.1| MADS1 [Corylus heterophylla]

 Score =  397 bits (1021), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 189/231 (81%), Positives = 217/231 (93%)

Query: 14  LSPKRKMGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVSLIVFSSRGRL 73
           +SP+RK+GRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAE++LIVFSSRGRL
Sbjct: 10  VSPQRKLGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEIALIVFSSRGRL 69

Query: 74  YEYSNNSVKSTIDRYKKATADTSNTGSICEANAQFYQQEAAKLRIQISNMQNSNRNMLGE 133
           YEY+NNSVK+TI+RYKKA AD+SN+GS+ EAN QFYQQEAAKLR QI ++Q+SNR+MLGE
Sbjct: 70  YEYANNSVKTTIERYKKACADSSNSGSVSEANTQFYQQEAAKLRGQIRSVQDSNRHMLGE 129

Query: 134 SLSGLNFKELKNMETRLEKGISRIRSKKNELLFAEIEYMQKREVDLHNSNQLLRAKIAEN 193
           +LS LNFKELK++E  LEKGI+RIRSKKNELLFAEIEYMQKREVDLHN+NQ LRAKIAEN
Sbjct: 130 ALSELNFKELKSLEKNLEKGINRIRSKKNELLFAEIEYMQKREVDLHNNNQFLRAKIAEN 189

Query: 194 ERGQQNMNLMQGGSSYEIIQSQPFDSRSYFQVNALQPTNHYPRQDQMALQL 244
           ER QQN+N+M GG +YE++QSQ FDSR+YFQV+ALQP +HYPRQDQMALQL
Sbjct: 190 ERNQQNLNVMPGGGNYELMQSQSFDSRNYFQVDALQPNHHYPRQDQMALQL 240

Source: Corylus heterophylla

Species: Corylus heterophylla

Genus: Corylus

Family: Betulaceae

Order: Fagales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224076916|ref|XP_002305048.1| predicted protein [Populus trichocarpa] gi|2981131|gb|AAC06237.1| AGAMOUS homolog [Populus trichocarpa] gi|222848012|gb|EEE85559.1| predicted protein [Populus trichocarpa] gi|384095955|gb|AFH66690.1| flowering locus C [Populus simonii x Populus nigra]

 Score =  397 bits (1021), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 190/232 (81%), Positives = 216/232 (93%)

Query: 13  ELSPKRKMGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVSLIVFSSRGR 72
           E SP RK+GRGK+EIKRIENTTNRQVTFCKRR+GLLKKAYELSVLCDAEV+LIVFSSRGR
Sbjct: 9   ESSPLRKLGRGKVEIKRIENTTNRQVTFCKRRSGLLKKAYELSVLCDAEVALIVFSSRGR 68

Query: 73  LYEYSNNSVKSTIDRYKKATADTSNTGSICEANAQFYQQEAAKLRIQISNMQNSNRNMLG 132
           LYEYSN+SVKSTI+RYKKA+AD+SNTGS+ EANAQ+YQQEAAKLR QI N+QNSNR+MLG
Sbjct: 69  LYEYSNDSVKSTIERYKKASADSSNTGSVSEANAQYYQQEAAKLRSQIGNLQNSNRHMLG 128

Query: 133 ESLSGLNFKELKNMETRLEKGISRIRSKKNELLFAEIEYMQKREVDLHNSNQLLRAKIAE 192
           E+LS L+ KELK++E RLEKGISRIRSKKNELLFAEIEYMQKREVDLHN+NQLLRAKI+E
Sbjct: 129 EALSSLSVKELKSLEIRLEKGISRIRSKKNELLFAEIEYMQKREVDLHNNNQLLRAKISE 188

Query: 193 NERGQQNMNLMQGGSSYEIIQSQPFDSRSYFQVNALQPTNHYPRQDQMALQL 244
           NER +Q+MNLM GG+ +EI+QSQP+DSR+Y QVN LQP +HY  QDQMALQL
Sbjct: 189 NERKRQSMNLMPGGADFEIVQSQPYDSRNYSQVNGLQPASHYSHQDQMALQL 240

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|354683068|gb|AER30448.1| AGAMOUS4 [Passiflora edulis]

 Score =  393 bits (1009), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 192/233 (82%), Positives = 215/233 (92%), Gaps = 1/233 (0%)

Query: 13  ELSPKRKMGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVSLIVFSSRGR 72
           E SP+R +GRGK+EIKRIENTTNRQVTF KRRNGLLKKAYELSVLCDAEV+LIVFS+RGR
Sbjct: 22  EASPQRTLGRGKVEIKRIENTTNRQVTFSKRRNGLLKKAYELSVLCDAEVALIVFSTRGR 81

Query: 73  LYEYSNNSVKSTIDRYKKATADTSNTGSICEANAQFYQQEAAKLRIQISNMQNSNRNMLG 132
           LYEYSN+SVKSTI+RYKKA+ADT+ TGS+ EANAQFYQQEAAKLR QISN+QNSNRNMLG
Sbjct: 82  LYEYSNSSVKSTIERYKKASADTNTTGSVSEANAQFYQQEAAKLRQQISNLQNSNRNMLG 141

Query: 133 ESLSGLNFKELKNMETRLEKGISRIRSKKNELLFAEIEYMQKREVDLHNSNQLLRAKIAE 192
           ESLSGL  K+LKN+E+RLEKGIS+IRSKKNELLFAEIEYMQKRE+DLHN+NQLLRAKIAE
Sbjct: 142 ESLSGLTAKDLKNLESRLEKGISKIRSKKNELLFAEIEYMQKREIDLHNNNQLLRAKIAE 201

Query: 193 NERGQQNMNLMQGGSSYEIIQS-QPFDSRSYFQVNALQPTNHYPRQDQMALQL 244
           NER +QNMNLM GGS+YE++QS Q +DSR+Y QVNAL   NHY  QDQMALQL
Sbjct: 202 NERKRQNMNLMPGGSNYEMMQSHQTYDSRNYSQVNALPSNNHYEHQDQMALQL 254

Source: Passiflora edulis

Species: Passiflora edulis

Genus: Passiflora

Family: Passifloraceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224116496|ref|XP_002317315.1| predicted protein [Populus trichocarpa] gi|2981133|gb|AAC06238.1| AGAMOUS homolog [Populus trichocarpa] gi|222860380|gb|EEE97927.1| predicted protein [Populus trichocarpa]

 Score =  392 bits (1008), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 192/240 (80%), Positives = 215/240 (89%), Gaps = 4/240 (1%)

Query: 1   MAFPNELAAGREELSPKRKMGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDA 60
           MA+ NE     +E SP RK+GRGK+EIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDA
Sbjct: 1   MAYQNE----PQESSPLRKLGRGKVEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDA 56

Query: 61  EVSLIVFSSRGRLYEYSNNSVKSTIDRYKKATADTSNTGSICEANAQFYQQEAAKLRIQI 120
           EV+LIVFSSRGRLYEYSNNSVKSTI+RYKKA AD+SN GS+ EANAQFYQQEAAKLR QI
Sbjct: 57  EVALIVFSSRGRLYEYSNNSVKSTIERYKKACADSSNNGSVSEANAQFYQQEAAKLRSQI 116

Query: 121 SNMQNSNRNMLGESLSGLNFKELKNMETRLEKGISRIRSKKNELLFAEIEYMQKREVDLH 180
            N+QNSNRNMLGESLS L+ KELK++E +LEKGI RIRSKKNELLFAEIEYMQKRE+DLH
Sbjct: 117 GNLQNSNRNMLGESLSALSVKELKSLEIKLEKGIGRIRSKKNELLFAEIEYMQKREIDLH 176

Query: 181 NSNQLLRAKIAENERGQQNMNLMQGGSSYEIIQSQPFDSRSYFQVNALQPTNHYPRQDQM 240
           N+NQLLRAKIAENER +Q+MNLM GG ++EI+QSQPFDSR+Y QVN L P NHYP +DQ+
Sbjct: 177 NNNQLLRAKIAENERKRQHMNLMPGGVNFEIMQSQPFDSRNYSQVNGLPPANHYPHEDQL 236

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|4103757|gb|AAD03486.1| MADS1 [Corylus avellana]

 Score =  391 bits (1005), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 188/232 (81%), Positives = 215/232 (92%), Gaps = 1/232 (0%)

Query: 14  LSPKRKMGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVSLIVFSSRGRL 73
           +SP+RK+GRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAE++LIVFSSRGRL
Sbjct: 10  VSPQRKLGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEIALIVFSSRGRL 69

Query: 74  YEYSNNS-VKSTIDRYKKATADTSNTGSICEANAQFYQQEAAKLRIQISNMQNSNRNMLG 132
           YEY+NNS VK+TI+RYKKA AD+SN+GS+ EAN QFYQQEAAKLR QI ++Q+SNR+MLG
Sbjct: 70  YEYANNSSVKTTIERYKKACADSSNSGSVSEANTQFYQQEAAKLRGQIRSVQDSNRHMLG 129

Query: 133 ESLSGLNFKELKNMETRLEKGISRIRSKKNELLFAEIEYMQKREVDLHNSNQLLRAKIAE 192
           E+LS LNFKELKN+E  LEKGI+RIRSKKNELL AEIEYM KREVDLHN+NQ LRAKIAE
Sbjct: 130 EALSELNFKELKNLEKNLEKGINRIRSKKNELLLAEIEYMHKREVDLHNNNQFLRAKIAE 189

Query: 193 NERGQQNMNLMQGGSSYEIIQSQPFDSRSYFQVNALQPTNHYPRQDQMALQL 244
           NER QQN+N+M GG +YE++QSQ FDSR+YFQV+ALQP +HYPRQDQMALQL
Sbjct: 190 NERNQQNLNVMPGGGNYELMQSQSFDSRNYFQVDALQPNHHYPRQDQMALQL 241

Source: Corylus avellana

Species: Corylus avellana

Genus: Corylus

Family: Betulaceae

Order: Fagales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	244
UNIPROTKB|Q40885	242	AG1 "Floral homeotic protein A	0.983	0.991	0.746	3.8e-94
UNIPROTKB|Q9ZS29	246	GAGA2 "MADS-box protein, GAGA2	0.983	0.975	0.726	1.2e-90
UNIPROTKB|Q9ZS30	264	gaga1 "MADS-box protein, GAGA1	0.983	0.909	0.696	1.3e-86
TAIR|locus:2140578	256	STK "AT4G09960" [Arabidopsis t	0.831	0.792	0.673	3.5e-68
UNIPROTKB|Q43616	225	fbp7 "Floral binding protein n	0.913	0.991	0.610	1.2e-67
UNIPROTKB|Q40882	228	fbp11 "Fbp11 protein" [Petunia	0.913	0.978	0.611	3.1e-67
UNIPROTKB|Q2QW53	270	MADS13 "MADS-box transcription	0.770	0.696	0.664	2.1e-61
TAIR|locus:2082618	240	AGL16 "AGAMOUS-like 16" [Arabi	0.770	0.783	0.492	1.5e-42
UNIPROTKB|D2T2F8	249	grcd4 "GRCD4 protein" [Gerbera	0.872	0.855	0.432	5.9e-41
UNIPROTKB|Q03489	241	FBP2 "Agamous-like MADS-box pr	0.856	0.867	0.435	3.3e-40

UNIPROTKB|Q40885 AG1 "Floral homeotic protein AGAMOUS" [Petunia x hybrida (taxid:4102)]

 Score = 937 (334.9 bits), Expect = 3.8e-94, P = 3.8e-94
 Identities = 183/245 (74%), Positives = 213/245 (86%)

Query:     1 MAFPNELAAGREELSPKRKMGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDA 60
             M F ++L     E+SP+RK+GRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDA
Sbjct:     1 MEFQSDLT---REISPQRKLGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDA 57

Query:    61 EVSLIVFSSRGRLYEYSNNSVKSTIDRYKKATADTSNTGSICEANAQFYQQEAAKLRIQI 120
             EV+LIVFSSRGRLYEY+NNSVK+TI+RYKKA +D+SNTGSI EANAQ+YQQEA+KLR QI
Sbjct:    58 EVALIVFSSRGRLYEYANNSVKATIERYKKACSDSSNTGSIAEANAQYYQQEASKLRAQI 117

Query:   121 SNMQNSNRNMLGESLSGLNFKELKNMETRLEKGISRIRSKKNELLFAEIEYMQKREVDLH 180
              N+QN NRN LGESL+ LN ++L+N+E ++EKGIS+IR+KKNELLFAEIEYMQKRE+DLH
Sbjct:   118 GNLQNQNRNFLGESLAALNLRDLRNLEQKIEKGISKIRAKKNELLFAEIEYMQKREIDLH 177

Query:   181 NSNQLLRAKIAENERGQQNMNLMQGGSSYEIIQ-SQPFDSRSYFQVNALQPTNHYPRQDQ 239
             N+NQ LRAKIAE ER QQ MNLM G SSY+++   Q FD+R+Y QVN LQ  NHYPRQDQ
Sbjct:   178 NNNQYLRAKIAETERSQQ-MNLMPGSSSYDLVPPQQSFDARNYLQVNGLQTNNHYPRQDQ 236

Query:   240 MALQL 244
               LQL
Sbjct:   237 PPLQL 241

GO:0005515 "protein binding" evidence=IPI

UNIPROTKB|Q9ZS29 GAGA2 "MADS-box protein, GAGA2" [Gerbera hybrid cultivar (taxid:18101)]

 Score = 904 (323.3 bits), Expect = 1.2e-90, P = 1.2e-90
 Identities = 181/249 (72%), Positives = 211/249 (84%)

Query:     1 MAFPNELAAGREELSPKRKMGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDA 60
             M+FPN+  +G  E+SP+RK+GRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDA
Sbjct:     1 MSFPND--SG--EMSPQRKLGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDA 56

Query:    61 EVSLIVFSSRGRLYEYSNNSVKSTIDRYKKATADTSNTGSICEANAQFYQQEAAKLRIQI 120
             EV+LIVFSSRGRLYEY+NNSVK TIDRYKKA  D  ++GS+ EANAQFYQQEAAKLR QI
Sbjct:    57 EVALIVFSSRGRLYEYANNSVKGTIDRYKKACLDPPSSGSVAEANAQFYQQEAAKLRQQI 116

Query:   121 SNMQNSNR----NMLGESLSGLNFKELKNMETRLEKGISRIRSKKNELLFAEIEYMQKRE 176
             +N+QN NR    N++GESL  +  K+LKN+E++LEKGI +IRSKKNE+LFAEIEYMQKRE
Sbjct:   117 ANLQNQNRQFYRNIMGESLGNMPAKDLKNLESKLEKGIGKIRSKKNEILFAEIEYMQKRE 176

Query:   177 VDLHNSNQLLRAKIAENERGQQNMNLMQGGSSYEIIQS-QPFDSRSYFQVNALQPTNHYP 235
              +LHNSNQ LR+KIAENER QQ+M+LM G S YE++   QPFD R+Y QVN LQP N+Y 
Sbjct:   177 NELHNSNQFLRSKIAENERAQQHMSLMPGSSDYELVAPHQPFDGRNYLQVNDLQPNNNYS 236

Query:   236 RQDQMALQL 244
              QDQ  LQL
Sbjct:   237 CQDQTPLQL 245

GO:0005515 "protein binding" evidence=IPI

UNIPROTKB|Q9ZS30 gaga1 "MADS-box protein, GAGA1" [Gerbera hybrid cultivar (taxid:18101)]

 Score = 866 (309.9 bits), Expect = 1.3e-86, P = 1.3e-86
 Identities = 174/250 (69%), Positives = 204/250 (81%)

Query:     1 MAFPNELAAGREELSPKRKMGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDA 60
             M+FP++      ++SP+RKMG+GKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDA
Sbjct:    18 MSFPDDTG----DMSPQRKMGKGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDA 73

Query:    61 EVSLIVFSSRGRLYEYSNNSVKSTIDRYKKATADTSNTGSICEANAQFYQQEAAKLRIQI 120
             EV+LIVFSSRGRLYEY+NNSVK TID+YKKA  D   +G++ EAN Q+YQQEAAKLR QI
Sbjct:    74 EVALIVFSSRGRLYEYANNSVKGTIDKYKKACLDPPTSGTVAEANTQYYQQEAAKLRQQI 133

Query:   121 SNMQNSNR----NMLGESLSGLNFKELKNMETRLEKGISRIRSKKNELLFAEIEYMQKRE 176
             +N+QN NR    N++GESL  +  K+LKN+E +LEK ISRIR+KKNELLFAEIEYMQKRE
Sbjct:   134 ANLQNQNRQFYRNIMGESLGDMPVKDLKNLEGKLEKAISRIRAKKNELLFAEIEYMQKRE 193

Query:   177 VDLHNSNQLLRAKIAENERGQQN-MNLMQGGSSYEIIQS-QPFDSRSYFQVNALQPTNHY 234
             ++LHNSNQ LRAKI ENER QQ+ M+LM G S YE++   QPFD R+Y Q N LQP N Y
Sbjct:   194 LELHNSNQFLRAKIVENERAQQHHMSLMPGSSDYELVTPHQPFDGRNYLQTNDLQPNNDY 253

Query:   235 PRQDQMALQL 244
               QDQ  LQL
Sbjct:   254 SCQDQTPLQL 263

GO:0005515 "protein binding" evidence=IPI

TAIR|locus:2140578 STK "AT4G09960" [Arabidopsis thaliana (taxid:3702)]

 Score = 692 (248.7 bits), Expect = 3.5e-68, P = 3.5e-68
 Identities = 138/205 (67%), Positives = 169/205 (82%)

Query:    19 KMGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVSLIVFSSRGRLYEYSN 78
             +MGRGKIEIKRIEN+TNRQVTFCKRRNGLLKKAYELSVLCDAEV+LIVFS+RGRLYEY+N
Sbjct:    26 RMGRGKIEIKRIENSTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSTRGRLYEYAN 85

Query:    79 NSVKSTIDRYKKATADTSNTGSICEANAQFYQQEAAKLRIQISNMQNSNRNMLGESLSGL 138
             N+++STI+RYKKA +D++NT ++ E NA +YQQE+AKLR QI  +QNSNRN++G+SLS L
Sbjct:    86 NNIRSTIERYKKACSDSTNTSTVQEINAAYYQQESAKLRQQIQTIQNSNRNLMGDSLSSL 145

Query:   139 NFKELKNMETRLEKGISRIRSKKNELLFAEIEYMQKREVDLHNSNQLLRAKIAENERGQQ 198
             + KELK +E RLEK ISRIRSKK+ELL  EIE  QKRE++L N N  LR K+AE ER QQ
Sbjct:   146 SVKELKQVENRLEKAISRIRSKKHELLLVEIENAQKREIELDNENIYLRTKVAEVERYQQ 205

Query:   199 NMNLMQGGSSYEIIQSQPFDSRSYF 223
             + + M  GS    I++    SR+YF
Sbjct:   206 HHHQMVSGSEINAIEA--LASRNYF 228

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS;IDA

GO:0005634 "nucleus" evidence=ISM;IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

GO:0005515 "protein binding" evidence=IPI

GO:0048440 "carpel development" evidence=IMP

GO:0048481 "ovule development" evidence=IGI;RCA;IMP

GO:0048316 "seed development" evidence=IGI

GO:0080155 "regulation of double fertilization forming a zygote and endosperm" evidence=IGI

GO:0009827 "plant-type cell wall modification" evidence=RCA

GO:0009860 "pollen tube growth" evidence=RCA

GO:0009886 "post-embryonic morphogenesis" evidence=RCA

GO:0009909 "regulation of flower development" evidence=RCA

GO:0048441 "petal development" evidence=RCA

GO:0048443 "stamen development" evidence=RCA

GO:0048507 "meristem development" evidence=RCA

UNIPROTKB|Q43616 fbp7 "Floral binding protein number 7" [Petunia x hybrida (taxid:4102)]

 Score = 687 (246.9 bits), Expect = 1.2e-67, P = 1.2e-67
 Identities = 138/226 (61%), Positives = 174/226 (76%)

Query:    20 MGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVSLIVFSSRGRLYEYSNN 79
             MGRGKIEIKRIEN TNRQVTFCKRRNGLLKKAYELSVLC+AE++LIVFS+RGR+YEYSNN
Sbjct:     1 MGRGKIEIKRIENNTNRQVTFCKRRNGLLKKAYELSVLCEAEIALIVFSTRGRVYEYSNN 60

Query:    80 SVKSTIDRYKKATADTSNTGSICEANAQFYQQEAAKLRIQISNMQNSNRNMLGESLSGLN 139
             ++++ IDRYKKAT +TSN  +  E NAQFYQQE+ KLR QI  +QNSNR+++GE LS LN
Sbjct:    61 NIRAIIDRYKKATVETSNAFTTQELNAQFYQQESKKLRQQIQLIQNSNRHLVGEGLSSLN 120

Query:   140 FKELKNMETRLEKGISRIRSKKNELLFAEIEYMQKREVDLHNSNQLLRAKIAENERGQQN 199
              +ELK +E RLE+GI+RIRSKK+E++ AE E +QKRE+ L   N  LR+KIAENER Q+ 
Sbjct:   121 VRELKQLENRLERGIARIRSKKHEMILAESEDLQKREIQLEQENAFLRSKIAENERLQEL 180

Query:   200 MNLMQGGSSYEIIQSQPFDSRSYFQVNALQPTNHYPR-QDQMALQL 244
               +  GG  Y  IQ   + +R+  Q+N ++    YP   D+ +L L
Sbjct:   181 SMMPAGGQEYNAIQQ--YLARNMLQLNMMEGVPSYPLPSDKKSLDL 224

GO:0005515 "protein binding" evidence=IPI

UNIPROTKB|Q40882 fbp11 "Fbp11 protein" [Petunia x hybrida (taxid:4102)]

 Score = 683 (245.5 bits), Expect = 3.1e-67, P = 3.1e-67
 Identities = 140/229 (61%), Positives = 177/229 (77%)

Query:    20 MGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVSLIVFSSRGRLYEYSNN 79
             MGRGKIEIKRIEN TNRQVTFCKRRNGLLKKAYELSVLCDAE++LIVFS+RGR+YEY+NN
Sbjct:     1 MGRGKIEIKRIENNTNRQVTFCKRRNGLLKKAYELSVLCDAEIALIVFSTRGRVYEYANN 60

Query:    80 SVKSTIDRYKKATADTSNTGSICEANAQFYQQEAAKLRIQISNMQNSNRNMLGESLSGLN 139
             ++K TI+RYKKATA+TSN  +  E NAQFYQQE+ KLR QI  +QN+NR+++GE LS LN
Sbjct:    61 NIKGTIERYKKATAETSNACTTQELNAQFYQQESKKLRQQIQLLQNTNRHLVGEGLSALN 120

Query:   140 FKELKNMETRLEKGISRIRSKKNELLFAEIEYMQKREVDLHNSNQLLRAKIAENERGQQN 199
              +ELK +E RLE+GI+RIRSKK+E++ AE E +QKRE+ L   N  LR+KIAENER Q+ 
Sbjct:   121 VRELKQLENRLERGITRIRSKKHEMILAETENLQKREIQLEQENTFLRSKIAENERLQEL 180

Query:   200 MNLMQGGSSYEIIQSQPFDSRSYFQVNALQ---PT-NHYPRQDQMALQL 244
               +   G  Y   Q Q F +R+  Q+N ++   P+ +  P  D+ +LQL
Sbjct:   181 SMMPATGQEYNAFQ-QYF-ARNMLQLNMMEGGVPSYDPLPAHDKKSLQL 227

GO:0005515 "protein binding" evidence=IPI

UNIPROTKB|Q2QW53 MADS13 "MADS-box transcription factor 13" [Oryza sativa Japonica Group (taxid:39947)]

 Score = 628 (226.1 bits), Expect = 2.1e-61, P = 2.1e-61
 Identities = 127/191 (66%), Positives = 160/191 (83%)

Query:    20 MGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVSLIVFSSRGRLYEYSNN 79
             MGRG+IEIKRIENTT+RQVTFCKRRNGLLKKAYELSVLCDAEV+LIVFSSRGRLYEYSNN
Sbjct:     1 MGRGRIEIKRIENTTSRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYSNN 60

Query:    80 S-VKSTIDRYKKATADTSNTGS-ICEANAQ-FYQQEAAKLRIQISNMQNSNRNMLGESLS 136
             + VK+TIDRYKKA A  S +G+ + E NAQ +YQQE+AKLR QI  +QN+N++++G+++S
Sbjct:    61 NNVKATIDRYKKAHACGSTSGAPLIEVNAQQYYQQESAKLRHQIQMLQNTNKHLVGDNVS 120

Query:   137 GLNFKELKNMETRLEKGISRIRSKKNELLFAEIEYMQKREVDLHNSNQLLRAKIAENERG 196
              L+ KELK +E+RLEKGIS+IR++KNELL +EI YM KRE++L N N  LR KIAE E+ 
Sbjct:   121 NLSLKELKQLESRLEKGISKIRARKNELLASEINYMAKREIELQNDNMDLRTKIAEEEQQ 180

Query:   197 QQNMNLMQGGS 207
              Q + + +  +
Sbjct:   181 LQQVTVARSAA 191

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0005515 "protein binding" evidence=IPI

GO:0048283 "indeterminate inflorescence morphogenesis" evidence=IMP

GO:0048481 "ovule development" evidence=IMP

TAIR|locus:2082618 AGL16 "AGAMOUS-like 16" [Arabidopsis thaliana (taxid:3702)]

 Score = 450 (163.5 bits), Expect = 1.5e-42, P = 1.5e-42
 Identities = 94/191 (49%), Positives = 133/191 (69%)

Query:    20 MGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVSLIVFSSRGRLYEYSNN 79
             MGRGKI IKRI N+T+RQVTF KRRNGLLKKA EL++LCDAEV +I+FSS GRLY++S++
Sbjct:     1 MGRGKIAIKRINNSTSRQVTFSKRRNGLLKKAKELAILCDAEVGVIIFSSTGRLYDFSSS 60

Query:    80 SVKSTIDRYKKATADTSNTGSICEANAQFYQQEAAKLRIQISNMQNSNRNMLGESLSGLN 139
             S+KS I+RY  A  +TS+      +  QF+Q+EAA L+ Q+ N+Q ++R M+GE LSGL+
Sbjct:    61 SMKSVIERYSDAKGETSSENDPA-SEIQFWQKEAAILKRQLHNLQENHRQMMGEELSGLS 119

Query:   140 FKELKNMETRLEKGISRIRSKKNELLFAEIEYMQKREVDLHNSNQLLRAKIAENERGQQN 199
              + L+N+E +LE  +  +R KK+++L  EI+ + +    +H  N  L  K+  N   QQN
Sbjct:   120 VEALQNLENQLELSLRGVRMKKDQMLIEEIQVLNREGNLVHQENLDLHKKV--NLMHQQN 177

Query:   200 MNLMQGGSSYE 210
             M L +  S  E
Sbjct:   178 MELHEKVSEVE 188

GO:0005634 "nucleus" evidence=ISM;IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0005515 "protein binding" evidence=IPI

GO:0008134 "transcription factor binding" evidence=IPI

GO:0042803 "protein homodimerization activity" evidence=IDA

GO:0010440 "stomatal lineage progression" evidence=IMP

GO:0006944 "cellular membrane fusion" evidence=RCA

GO:0009556 "microsporogenesis" evidence=RCA

GO:0048481 "ovule development" evidence=RCA

GO:0052543 "callose deposition in cell wall" evidence=RCA

UNIPROTKB|D2T2F8 grcd4 "GRCD4 protein" [Gerbera hybrid cultivar (taxid:18101)]

 Score = 435 (158.2 bits), Expect = 5.9e-41, P = 5.9e-41
 Identities = 93/215 (43%), Positives = 138/215 (64%)

Query:    20 MGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVSLIVFSSRGRLYEY-SN 78
             MGRG++E+KRIEN  NRQVTF KRRNGLLKKAYELSVLCDAEV+LI+FS+RG+LYE+ S+
Sbjct:     1 MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSS 60

Query:    79 NSVKSTIDRYKKATADTSNTGSICEANAQFYQQEAAKLRIQISNMQNSNRNMLGESLSGL 138
             +S+  T+++Y   +   S   S  E  +Q+   E  +L+ ++  +Q S RN+LGE L+ L
Sbjct:    61 SSMVKTLEKYHSCSYG-SLKASQPENESQYNYHEYLRLKARVEVLQRSQRNLLGEDLAPL 119

Query:   139 NFKELKNMETRLEKGISRIRSKKNELLFAEIEYMQKREVDLHNSNQLLRAKIAENERGQQ 198
             N KEL+ +E +LE  + +IRS K + +  ++  +Q++E  L  +N+ LR K+ E+ +   
Sbjct:   120 NTKELEQLEHQLEMSLRKIRSTKTQSMLDQLADLQRKEQVLAETNKALRKKLEESAQEYP 179

Query:   199 NMNLMQGGSSYEIIQSQPFDSRSYFQVNALQPTNH 233
                + +GG+        P  S  +FQ   L  T H
Sbjct:   180 VRQMWEGGAQTIPYNPLPTHSDEFFQPLGLNSTMH 214

GO:0005515 "protein binding" evidence=IPI

UNIPROTKB|Q03489 FBP2 "Agamous-like MADS-box protein AGL9 homolog" [Petunia x hybrida (taxid:4102)]

 Score = 428 (155.7 bits), Expect = 3.3e-40, P = 3.3e-40
 Identities = 94/216 (43%), Positives = 138/216 (63%)

Query:    20 MGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVSLIVFSSRGRLYEY-SN 78
             MGRG++E+KRIEN  NRQVTF KRRNGLLKKAYELSVLCDAEV+LI+FS+RG+LYE+ S+
Sbjct:     1 MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSS 60

Query:    79 NSVKSTIDRYKKATADTSNTG-SICEANAQFYQQEAAKLRIQISNMQNSNRNMLGESLSG 137
             +S+  T++RY+K       T  S  EA     QQE  KL+ +   +Q S RN+LGE L  
Sbjct:    61 SSMLKTLERYQKCNYGAPETNISTREALEISSQQEYLKLKARYEALQRSQRNLLGEDLGP 120

Query:   138 LNFKELKNMETRLEKGISRIRSKKNELLFAEIEYMQKREVDLHNSNQLLRAKIAENE--R 195
             LN KEL+++E +L+  + +IRS + +L+  +++ +Q++E  L+ +N+ L+ ++ E     
Sbjct:   121 LNSKELESLERQLDMSLKQIRSTRTQLMLDQLQDLQRKEHALNEANRTLKQRLMEGSTLN 180

Query:   196 GQQNMNLMQGGSSYEIIQSQPFDSRSYFQVNALQPT 231
              Q   N    G   +  Q+Q      +F     +PT
Sbjct:   181 LQWQQNAQDVGYGRQATQTQ---GDGFFHPLECEPT 213

GO:0005515 "protein binding" evidence=IPI

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q2V0P1	MAD58_ORYSJ	No assigned EC number	0.6306	0.9016	0.8088	yes	no
Q40885	AG_PETHY	No assigned EC number	0.7469	0.9836	0.9917	N/A	no
Q40704	MADS3_ORYSJ	No assigned EC number	0.6593	0.9221	0.9533	yes	no
Q43585	AG_TOBAC	No assigned EC number	0.736	0.9877	0.9717	N/A	no
Q40168	AG_SOLLC	No assigned EC number	0.728	0.9877	0.9717	N/A	no
Q40872	AG_PANGI	No assigned EC number	0.7705	0.9467	0.9545	N/A	no
Q01540	AG_BRANA	No assigned EC number	0.7165	0.9877	0.9563	N/A	no
P17839	AG_ARATH	No assigned EC number	0.7125	0.9877	0.9563	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	244
cd00265	77	cd00265, MADS_MEF2_like, MEF2 (myocyte enhancer fa	9e-45
pfam01486	100	pfam01486, K-box, K-box region	4e-34
smart00432	59	smart00432, MADS, MADS domain	1e-33
cd00120	59	cd00120, MADS, MADS: MCM1, Agamous, Deficiens, and	7e-32
cd00266	83	cd00266, MADS_SRF_like, SRF-like/Type I subfamily	1e-26
pfam00319	51	pfam00319, SRF-TF, SRF-type transcription factor (	8e-25
COG5068	412	COG5068, ARG80, Regulator of arginine metabolism a	4e-09

>gnl|CDD|238165 cd00265, MADS_MEF2_like, MEF2 (myocyte enhancer factor 2)-like/Type II subfamily of MADS ( MCM1, Agamous, Deficiens, and SRF (serum response factor) box family of eukaryotic transcriptional regulators

 Score =  144 bits (366), Expect = 9e-45
 Identities = 54/74 (72%), Positives = 66/74 (89%)

Query: 21 GRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVSLIVFSSRGRLYEYSNNS 80
          GRGKIEIKRIEN+TNRQVTF KRRNGLLKKA+ELSVLCDAEV+LI+FSS G+LYE+S+ S
Sbjct: 1  GRGKIEIKRIENSTNRQVTFSKRRNGLLKKAHELSVLCDAEVALIIFSSSGKLYEFSSPS 60

Query: 81 VKSTIDRYKKATAD 94
          ++  I+RY+K +  
Sbjct: 61 MEKIIERYQKTSGS 74

Binds DNA and exists as hetero and homo-dimers. Differs from SRF-like/Type I subgroup mainly in position of the alpha helix responsible for the dimerization interface. Important in homeotic regulation in plants and in immediate-early development in animals. Also found in fungi. Length = 77

>gnl|CDD|216525 pfam01486, K-box, K-box region

 Score =  118 bits (297), Expect = 4e-34
 Identities = 43/99 (43%), Positives = 63/99 (63%)

Query: 94  DTSNTGSICEANAQFYQQEAAKLRIQISNMQNSNRNMLGESLSGLNFKELKNMETRLEKG 153
              +   + E+  +  QQEAAKL+ Q  N+Q   R++LGE L  L+ KEL+ +E +LE G
Sbjct: 2   QKLSGNDLWESKYENLQQEAAKLKKQNENLQREQRHLLGEDLGSLSLKELQQLEQQLENG 61

Query: 154 ISRIRSKKNELLFAEIEYMQKREVDLHNSNQLLRAKIAE 192
           +  IRS+KNELL  +IE +QK+E +L   N+ LR K+ E
Sbjct: 62  LKHIRSRKNELLLNQIEELQKKERELQEENRNLRQKLEE 100

The K-box region is commonly found associated with SRF-type transcription factors see pfam00319. The K-box is a possible coiled-coil structure. Possible role in multimer formation. Length = 100

>gnl|CDD|197721 smart00432, MADS, MADS domain

 Score =  115 bits (290), Expect = 1e-33
 Identities = 46/57 (80%), Positives = 51/57 (89%)

Query: 21 GRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVSLIVFSSRGRLYEYS 77
          GR KIEIKRIEN TNRQVTF KRRNGL KKA+ELSVLCDAEV+LIVFS  G+LYE++
Sbjct: 1  GRRKIEIKRIENKTNRQVTFSKRRNGLFKKAHELSVLCDAEVALIVFSPTGKLYEFA 57

Length = 59

>gnl|CDD|238067 cd00120, MADS, MADS: MCM1, Agamous, Deficiens, and SRF (serum response factor) box family of eukaryotic transcriptonal regulators

 Score =  111 bits (279), Expect = 7e-32
 Identities = 45/57 (78%), Positives = 50/57 (87%)

Query: 21 GRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVSLIVFSSRGRLYEYS 77
          GRGKIEIKRIEN T+RQVTF KRRNGL KKA ELSVLCDAEV++IVFS  G+LYE+ 
Sbjct: 1  GRGKIEIKRIENKTSRQVTFSKRRNGLFKKASELSVLCDAEVAVIVFSPSGKLYEFW 57

Binds DNA and exists as hetero and homo-dimers. Composed of 2 main subgroups: SRF-like/Type I and MEF2-like (myocyte enhancer factor 2)/ Type II. These subgroups differ mainly in position of the alpha 2 helix responsible for the dimerization interface; Important in homeotic regulation in plants and in immediate-early development in animals. Also found in fungi. Length = 59

>gnl|CDD|238166 cd00266, MADS_SRF_like, SRF-like/Type I subfamily of MADS (MCM1, Agamous, Deficiens, and SRF (serum response factor) box family of eukaryotic transcriptional regulators

 Score = 98.1 bits (245), Expect = 1e-26
 Identities = 40/74 (54%), Positives = 52/74 (70%), Gaps = 1/74 (1%)

Query: 21 GRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVSLIVFSSRGRLYE-YSNN 79
          GR KI+IKRIEN   R VTF KRR GL KKA ELS LC AEV++IV+S  G+LY  + ++
Sbjct: 1  GRKKIKIKRIENKKKRAVTFSKRRQGLFKKASELSTLCGAEVAVIVYSPSGKLYVFWPSS 60

Query: 80 SVKSTIDRYKKATA 93
           V+  I R++  +A
Sbjct: 61 EVEGVISRFEVLSA 74

Binds DNA and exists as hetero- and homo-dimers. Differs from the MEF-like/Type II subgroup mainly in position of the alpha 2 helix responsible for the dimerization interface. Important in homeotic regulation in plants and in immediate-early development in animals. Also found in fungi. Length = 83

>gnl|CDD|109379 pfam00319, SRF-TF, SRF-type transcription factor (DNA-binding and dimerisation domain)

 Score = 92.4 bits (230), Expect = 8e-25
 Identities = 39/51 (76%), Positives = 47/51 (92%)

Query: 28 KRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVSLIVFSSRGRLYEYSN 78
          KRIEN +NRQVTF KRRNG+ KKA+ELSVLCDAEV++I+FSS G+LYEYS+
Sbjct: 1  KRIENKSNRQVTFSKRRNGIFKKAHELSVLCDAEVAVIIFSSTGKLYEYSS 51

Length = 51

>gnl|CDD|227400 COG5068, ARG80, Regulator of arginine metabolism and related MADS box-containing transcription factors [Transcription]

 Score = 55.8 bits (134), Expect = 4e-09
 Identities = 28/66 (42%), Positives = 41/66 (62%)

Query: 20  MGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVSLIVFSSRGRLYEYSNN 79
           +   KI I  I N T R VTF KR++G+ KKA+ELSVL   EV L+V S  G ++ ++  
Sbjct: 81  VTGRKIGISYITNKTKRSVTFSKRKHGINKKAFELSVLTGTEVLLLVISENGLVHTFTTP 140

Query: 80  SVKSTI 85
            ++S +
Sbjct: 141 KLESVV 146

Length = 412

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	244
KOG0014	195	consensus MADS box transcription factor [Transcrip	100.0
cd00265	77	MADS_MEF2_like MEF2 (myocyte enhancer factor 2)-li	99.98
cd00266	83	MADS_SRF_like SRF-like/Type I subfamily of MADS (M	99.96
smart00432	59	MADS MADS domain.	99.96
cd00120	59	MADS MADS: MCM1, Agamous, Deficiens, and SRF (seru	99.95
PF00319	51	SRF-TF: SRF-type transcription factor (DNA-binding	99.93
KOG0015	338	consensus Regulator of arginine metabolism and rel	99.82
PF01486	100	K-box: K-box region; InterPro: IPR002487 MADS gene	99.81
COG5068	412	ARG80 Regulator of arginine metabolism and related	99.46
PF06005	72	DUF904: Protein of unknown function (DUF904); Inte	94.51
PRK15422	79	septal ring assembly protein ZapB; Provisional	89.33
PF10584	23	Proteasome_A_N: Proteasome subunit A N-terminal si	86.83
COG3074	79	Uncharacterized protein conserved in bacteria [Fun	85.76
PF06156	107	DUF972: Protein of unknown function (DUF972); Inte	84.29
cd07429	108	Cby_like Chibby, a nuclear inhibitor of Wnt/beta-c	83.91
PF06698	59	DUF1192: Protein of unknown function (DUF1192); In	83.77
PRK13169	110	DNA replication intiation control protein YabA; Re	82.13
PF01166	59	TSC22: TSC-22/dip/bun family; InterPro: IPR000580	81.75
PF08317	325	Spc7: Spc7 kinetochore protein; InterPro: IPR01325	81.65
smart00787	312	Spc7 Spc7 kinetochore protein. This domain is foun	80.88

>KOG0014 consensus MADS box transcription factor [Transcription]

Probab=100.00  E-value=1.2e-38  Score=268.41  Aligned_cols=158  Identities=42%  Similarity=0.660  Sum_probs=126.2

Q ss_pred             CCccccceeeecCCCCcceehhcccchhhhhhhhhhcccccceeeEeeecCCccccccCcc--hhhhHHHHhhhccCCCC
Q 036452           20 MGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVSLIVFSSRGRLYEYSNNS--VKSTIDRYKKATADTSN   97 (244)
Q Consensus        20 MgR~Ki~ik~Ien~~~RqvTFsKRr~GL~KKA~ELSvLCdaeValIifS~~gkl~~f~s~s--m~~iieRY~~~~~~~~~   97 (244)
                      |||+||+|++|+|.++|||||+|||+||||||+||||||||+||||||||+|++|+|++++  |..|++||.........
T Consensus         1 M~R~ki~i~~Ien~~~RqvTFsKRr~GL~KKA~ELsvLCd~eiavIifsp~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~   80 (195)
T KOG0014|consen    1 MGRGKIEIKRIENESSRQVTFSKRRNGLFKKASELSVLCDAEIAVIVFSPSGKLYEFGSSDESVDAVVDRFLNLTEPSRK   80 (195)
T ss_pred             CCCCccceeeccccchhhhhhHHHHhhHHHHHHHHHHhcCCeEEEEEECCCCCccccCCcchhHHHHHHHHHhhhhhhhc
Confidence            9999999999999999999999999999999999999999999999999999999999986  99999999886654433


Q ss_pred             CCchhhhhh--------------------hhhHHHHHHHHHHHHHHHh---hhccccCCCCCCCCH-HHHHHHHHHHHHH
Q 036452           98 TGSICEANA--------------------QFYQQEAAKLRIQISNMQN---SNRNMLGESLSGLNF-KELKNMETRLEKG  153 (244)
Q Consensus        98 ~~~~~~~~~--------------------e~lq~ei~kLk~~i~~L~~---~~r~l~Ge~L~~Ls~-~EL~~LE~~Le~~  153 (244)
                      .+.......                    ..+......+....+.++.   ..+++.|+++.+++. .+|..++.+|+..
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~l~~~~~l~~~~~~l~~~  160 (195)
T KOG0014|consen   81 KKRVNLESFLRNKKLTELVEEEEKEELKLQLKKSLESSLKVDPEDLELLELEQRKLTGEDLQSLSSLNELNSLESQLESS  160 (195)
T ss_pred             ccccchhhHhhhhhhhcccchhhhhhccchhhhhhhhhhhcchhhhhhhHHHHHHHhccccccCCHHHHhcchhhHHHHh
Confidence            222111110                    0122334445555555543   367899999999999 9999999999999


Q ss_pred             HHHHHHHHHHHHHHHHH-HHHHHHH
Q 036452          154 ISRIRSKKNELLFAEIE-YMQKREV  177 (244)
Q Consensus       154 L~~Ir~rK~~ll~~~i~-~l~kke~  177 (244)
                      +..+|..+...+..++. .++.++.
T Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~~~~  185 (195)
T KOG0014|consen  161 LHNSRSSKSKPLSDSNFQVLQEKEK  185 (195)
T ss_pred             hcCCCCCCCcCCcchhhhhhcccch
Confidence            99999999888877765 3343333

>cd00265 MADS_MEF2_like MEF2 (myocyte enhancer factor 2)-like/Type II subfamily of MADS ( MCM1, Agamous, Deficiens, and SRF (serum response factor) box family of eukaryotic transcriptional regulators

Probab=99.98  E-value=9.5e-34  Score=205.18  Aligned_cols=74  Identities=73%  Similarity=1.114  Sum_probs=71.8

Q ss_pred             CccccceeeecCCCCcceehhcccchhhhhhhhhhcccccceeeEeeecCCccccccCcchhhhHHHHhhhccC
Q 036452           21 GRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVSLIVFSSRGRLYEYSNNSVKSTIDRYKKATAD   94 (244)
Q Consensus        21 gR~Ki~ik~Ien~~~RqvTFsKRr~GL~KKA~ELSvLCdaeValIifS~~gkl~~f~s~sm~~iieRY~~~~~~   94 (244)
                      ||+||+|++|||..+|++||+||+.||||||.||||||||+||||||||+|++|+|++|++++||+||++.++.
T Consensus         1 gr~ki~i~~i~~~~~r~~tf~kR~~gl~kKa~Els~Lc~~~v~lvv~sp~gk~~~f~s~s~~~vl~ry~~~~~~   74 (77)
T cd00265           1 GRGKIEIKRIENSTNRQVTFSKRRNGLLKKAHELSVLCDAEVALIIFSSSGKLYEFSSPSMEKIIERYQKTSGS   74 (77)
T ss_pred             CCCcceeEEecCccHHHHHHHHhhhhhhhcceeheeccCCceeEEEEcCCCceEEecCCCHHHHHHHHHhcccc
Confidence            89999999999999999999999999999999999999999999999999999999999999999999987753

Binds DNA and exists as hetero and homo-dimers. Differs from SRF-like/Type I subgroup mainly in position of the alpha helix responsible for the dimerization interface. Important in homeotic regulation in plants and in immediate-early development in animals. Also found in fungi.

>cd00266 MADS_SRF_like SRF-like/Type I subfamily of MADS (MCM1, Agamous, Deficiens, and SRF (serum response factor) box family of eukaryotic transcriptional regulators

Probab=99.96  E-value=1.6e-30  Score=190.96  Aligned_cols=74  Identities=55%  Similarity=0.840  Sum_probs=70.5

Q ss_pred             CccccceeeecCCCCcceehhcccchhhhhhhhhhcccccceeeEeeecCCccccccCcc-hhhhHHHHhhhccC
Q 036452           21 GRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVSLIVFSSRGRLYEYSNNS-VKSTIDRYKKATAD   94 (244)
Q Consensus        21 gR~Ki~ik~Ien~~~RqvTFsKRr~GL~KKA~ELSvLCdaeValIifS~~gkl~~f~s~s-m~~iieRY~~~~~~   94 (244)
                      ||+||+|++|+|..+|+|||+|||.||||||+||||||||+||+|||||+|++++|++++ +..++++|...+..
T Consensus         1 gr~Ki~i~~I~~~~~R~~tf~KRk~gl~kKa~ELs~Lc~~~v~~iv~sp~~~~~~~~~~~~~~~~l~~~~~~~~~   75 (83)
T cd00266           1 GRKKIKIKRIENKKKRAVTFSKRRQGLFKKASELSTLCGAEVAVIVYSPSGKLYVFWPSSEVEGVISRFEVLSAL   75 (83)
T ss_pred             CCccceeEEeeccchhhhhHHHhhhhHHHHHHHHHHhhCCcEEEEEECCCCCcceecCcHHHHHHHHHHhhcCHh
Confidence            799999999999999999999999999999999999999999999999999999998876 99999999886653

Binds DNA and exists as hetero- and homo-dimers. Differs from the MEF-like/Type II subgroup mainly in position of the alpha 2 helix responsible for the dimerization interface. Important in homeotic regulation in plants and in immediate-early development in animals. Also found in fungi.

>smart00432 MADS MADS domain

Probab=99.96  E-value=5.2e-30  Score=175.72  Aligned_cols=59  Identities=78%  Similarity=1.142  Sum_probs=57.9

Q ss_pred             CccccceeeecCCCCcceehhcccchhhhhhhhhhcccccceeeEeeecCCccccccCc
Q 036452           21 GRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVSLIVFSSRGRLYEYSNN   79 (244)
Q Consensus        21 gR~Ki~ik~Ien~~~RqvTFsKRr~GL~KKA~ELSvLCdaeValIifS~~gkl~~f~s~   79 (244)
                      ||+||+|++|+|..+|++||+||+.||||||+||||||||+||+|||||+|++|.|++|
T Consensus         1 gR~Ki~i~~I~~~~~R~~tf~kRk~gl~kKa~Els~Lc~~~v~~iv~sp~g~~~~~~~p   59 (59)
T smart00432        1 GRRKIEIKRIENKTNRQVTFSKRRNGLFKKAHELSVLCDAEVALIVFSPTGKLYEFASP   59 (59)
T ss_pred             CCCcceeEEeeCcchhhhhhHhhhhhHHHHHHHHhhccCCeEEEEEECCCCCeeeccCC
Confidence            89999999999999999999999999999999999999999999999999999999886

>cd00120 MADS MADS: MCM1, Agamous, Deficiens, and SRF (serum response factor) box family of eukaryotic transcriptonal regulators

Probab=99.95  E-value=3e-29  Score=172.07  Aligned_cols=59  Identities=76%  Similarity=1.143  Sum_probs=57.7

Q ss_pred             CccccceeeecCCCCcceehhcccchhhhhhhhhhcccccceeeEeeecCCccccccCc
Q 036452           21 GRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVSLIVFSSRGRLYEYSNN   79 (244)
Q Consensus        21 gR~Ki~ik~Ien~~~RqvTFsKRr~GL~KKA~ELSvLCdaeValIifS~~gkl~~f~s~   79 (244)
                      ||+||+|++|+|...|++||+||+.||||||+||||||||+||+|||||+|++++|+++
T Consensus         1 gr~Ki~i~~I~~~~~R~~tf~kR~~gl~kKa~Els~Lc~~~v~~iv~sp~g~~~~~~~~   59 (59)
T cd00120           1 GRGKIEIKRIENKTSRQVTFSKRRNGLFKKASELSVLCDAEVAVIVFSPSGKLYEFWSS   59 (59)
T ss_pred             CCccceeEEeeCcchhhhhHHHHhchHHHhhhhheeccCCcEEEEEECCCCCcccccCC
Confidence            79999999999999999999999999999999999999999999999999999999875

Binds DNA and exists as hetero and homo-dimers. Composed of 2 main subgroups: SRF-like/Type I and MEF2-like (myocyte enhancer factor 2)/ Type II. These subgroups differ mainly in position of the alpha 2 helix responsible for the dimerization interface; Important in homeotic regulation in plants and in immediate-early development in animals. Also found in fungi.

>PF00319 SRF-TF: SRF-type transcription factor (DNA-binding and dimerisation domain); InterPro: IPR002100 Human serum response factor (SRF) is a ubiquitous nuclear protein important for cell proliferation and differentiation

Probab=99.93  E-value=1e-27  Score=159.38  Aligned_cols=51  Identities=59%  Similarity=0.993  Sum_probs=47.1

Q ss_pred             eeecCCCCcceehhcccchhhhhhhhhhcccccceeeEeeecCCccccccC
Q 036452           28 KRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVSLIVFSSRGRLYEYSN   78 (244)
Q Consensus        28 k~Ien~~~RqvTFsKRr~GL~KKA~ELSvLCdaeValIifS~~gkl~~f~s   78 (244)
                      |+|+|.+.|++||+|||.||||||.|||+||||+||||||||+|++|+|+|
T Consensus         1 K~I~n~~~R~~tf~KRk~gL~KKa~ELs~LC~~~v~~iv~~~~g~~~~f~s   51 (51)
T PF00319_consen    1 KRIENKSRRKVTFSKRKKGLFKKASELSTLCGVDVALIVFSPDGKLYTFPS   51 (51)
T ss_dssp             S--SSHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEEETTSEEEEEES
T ss_pred             CCccchhHhHhHHHHHHhhhhhccceeeeecCCeEEEEEECCCCCEEEecC
Confidence            689999999999999999999999999999999999999999999999986

SRF function is essential for transcriptional regulation of numerous growth-factor-inducible genes, such as c-fos oncogene and muscle-specific actin genes. A core domain of around 90 amino acids is sufficient for the activities of DNA-binding, dimerisation and interaction with accessory factors. Within the core is a DNA-binding region, designated the MADS box [], that is highly similar to many eukaryotic regulatory proteins: among these are MCM1, the regulator of cell type-specific genes in fission yeast; DSRF, a Drosophila trachea development factor; the MEF2 family of myocyte-specific enhancer factors; and the Agamous and Deficiens families of plant homeotic proteins. In SRF, the MADS box has been shown to be involved in DNA-binding and dimerisation []. Proteins belonging to the MADS family function as dimers, the primary DNA-binding element of which is an anti-parallel coiled coil of two amphipathic alpha-helices, one from each subunit. The DNA wraps around the coiled coil allowing the basic N-termini of the helices to fit into the DNA major groove. The chain extending from the helix N-termini reaches over the DNA backbone and penetrates into the minor groove. A 4-stranded, anti-parallel beta-sheet packs against the coiled-coil face opposite the DNA and is the central element of the dimerisation interface. The MADS-box domain is commonly found associated with K-box region see IPR002487 from INTERPRO ; GO: 0003677 DNA binding, 0046983 protein dimerization activity; PDB: 1MNM_B 1N6J_A 1TQE_S 3MU6_D 3P57_I 1EGW_A 1C7U_B 3KOV_A 1HBX_A 1K6O_C ....

>KOG0015 consensus Regulator of arginine metabolism and related MADS box-containing transcription factors [Transcription]

Probab=99.82  E-value=5e-21  Score=166.65  Aligned_cols=79  Identities=39%  Similarity=0.640  Sum_probs=71.8

Q ss_pred             hccccccCcccCCCccccceeeecCCCCcceehhcccchhhhhhhhhhcccccceeeEeeecCCccccccCcchhhhHH
Q 036452            8 AAGREELSPKRKMGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVSLIVFSSRGRLYEYSNNSVKSTID   86 (244)
Q Consensus         8 ~~~~~~~~~~~~MgR~Ki~ik~Ien~~~RqvTFsKRr~GL~KKA~ELSvLCdaeValIifS~~gkl~~f~s~sm~~iie   86 (244)
                      ......-..++.-||+||+|++|||+..|.|||||||.||||||+|||||.|.+|-|+|.|.+|-+|+|++|.++.||.
T Consensus        50 ~~~~~~~~~k~~~gr~kik~eyIenK~rR~~tFSKRK~GImKKAyELs~LTGtqVllLVaSEtGhVyTFaTpKLep~i~  128 (338)
T KOG0015|consen   50 NSGSQKDGGKKTTGRVKIKMEYIENKLRRYVTFSKRKTGIMKKAYELSTLTGTQVLLLVASETGHVYTFATPKLEPMIT  128 (338)
T ss_pred             CcccccCCCccccceeeccchhhcccceeeeeehhhhhhhHHHHHHhhhcccceEEEEEEecCcceEEecccccccccc
Confidence            3445566678889999999999999999999999999999999999999999999999999999999999997766663

>PF01486 K-box: K-box region; InterPro: IPR002487 MADS genes in plants encode key developmental regulators of vegetative and reproductive development

Probab=99.81  E-value=1.8e-19  Score=136.82  Aligned_cols=92  Identities=39%  Similarity=0.637  Sum_probs=87.2

Q ss_pred             hhhhhhhhhHHHHHHHHHHHHHHHhhhccccCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 036452          101 ICEANAQFYQQEAAKLRIQISNMQNSNRNMLGESLSGLNFKELKNMETRLEKGISRIRSKKNELLFAEIEYMQKREVDLH  180 (244)
Q Consensus       101 ~~~~~~e~lq~ei~kLk~~i~~L~~~~r~l~Ge~L~~Ls~~EL~~LE~~Le~~L~~Ir~rK~~ll~~~i~~l~kke~~l~  180 (244)
                      .+..+.++|+.++.+|+.+++.|+..+|+++|++|++||++||.+||++|+.+|.+||+||+++|.++|+.|++|+..+.
T Consensus         9 ~~~~~~e~~~~e~~~L~~~~~~L~~~~R~~~GedL~~Ls~~eL~~LE~~Le~aL~~VR~rK~~~l~~~i~~l~~ke~~l~   88 (100)
T PF01486_consen    9 LWDSQHEELQQEIAKLRKENESLQKELRHLMGEDLESLSLKELQQLEQQLESALKRVRSRKDQLLMEQIEELKKKERELE   88 (100)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccccchHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44556678999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHH
Q 036452          181 NSNQLLRAKIAE  192 (244)
Q Consensus       181 een~~L~~~~~~  192 (244)
                      ++|..|+.++.|
T Consensus        89 ~en~~L~~~~~e  100 (100)
T PF01486_consen   89 EENNQLRQKIEE  100 (100)
T ss_pred             HHHHHHHHHhcC
Confidence            999999999854

The majority of the plant MADS proteins share a stereotypical MIKC structure. It comprises (from N- to C-terminal) an N-terminal domain, which is, however, present only in a minority of proteins; a MADS domain (see PDOC00302 from PROSITEDOC, IPR002100 from INTERPRO), which is the major determinant of DNA-binding but which also performs dimerisation and accessory factor binding functions; a weakly conserved intervening (I) domain, which constitutes a key molecular determinant for the selective formation of DNA-binding dimers; a keratin-like (K-box) domain, which promotes protein dimerisation; and a C-terminal (C) domain, which is involved in transcriptional activation or in the formation of ternary or quaternary protein complexes. The 80-amino acid K-box domain was originally identified as a region with low but significant similarity to a region of keratin, which is part of the coiled-coil sequence constituting the central rod-shaped domain of keratin [, , ]. The K-box protein-protein interaction domain which mediates heterodimerization of MIKC-type MADS proteins contains several heptad repeats in which the first and the fourth positions are occupied by hydrophobic amino acids suggesting that the K-box domain forms three amphipathic alpha-helices referred to as K1, K2, and K3 [].; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus

>COG5068 ARG80 Regulator of arginine metabolism and related MADS box-containing transcription factors [Transcription]

Probab=99.46  E-value=2.4e-14  Score=130.27  Aligned_cols=68  Identities=41%  Similarity=0.606  Sum_probs=64.2

Q ss_pred             CCCccccceeeecCCCCcceehhcccchhhhhhhhhhcccccceeeEeeecCCccccccCcchhhhHH
Q 036452           19 KMGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVSLIVFSSRGRLYEYSNNSVKSTID   86 (244)
Q Consensus        19 ~MgR~Ki~ik~Ien~~~RqvTFsKRr~GL~KKA~ELSvLCdaeValIifS~~gkl~~f~s~sm~~iie   86 (244)
                      .|||+||.|..|+|+.+|.|||+||+.||+|||.||+||.+.+|.|+|.|.+|+++.|+.|..+.|+.
T Consensus        80 ~~~~~~~~is~i~nk~~r~vtf~Krk~gI~kka~ElsvLt~~~vl~lvise~g~v~tf~tp~~e~v~~  147 (412)
T COG5068          80 SVTGRKIGISYITNKTKRSVTFSKRKHGINKKAFELSVLTGTEVLLLVISENGLVHTFTTPKLESVVK  147 (412)
T ss_pred             ccccccCCcccccCcccccchhhhhhhhhhhhhhhhhhccCCceEEEEecCCCceeeecCCccccccc
Confidence            68999999999999999999999999999999999999999999999999999999999987665553

>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation

Probab=94.51  E-value=0.37  Score=34.28  Aligned_cols=52  Identities=19%  Similarity=0.395  Sum_probs=38.5

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 036452          138 LNFKELKNMETRLEKGISRIRSKKNELLFAEIEYMQKREVDLHNSNQLLRAKIAENE  194 (244)
Q Consensus       138 Ls~~EL~~LE~~Le~~L~~Ir~rK~~ll~~~i~~l~kke~~l~een~~L~~~~~~~~  194 (244)
                      +|++.|.+||..+..++..|.     ++..+++.|+.+...|.++|..|+.......
T Consensus         1 M~~E~l~~LE~ki~~aveti~-----~Lq~e~eeLke~n~~L~~e~~~L~~en~~L~   52 (72)
T PF06005_consen    1 MSLELLEQLEEKIQQAVETIA-----LLQMENEELKEKNNELKEENEELKEENEQLK   52 (72)
T ss_dssp             --HHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CchHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence            578999999999999999876     5566678888887777777777766654433

It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.

>PRK15422 septal ring assembly protein ZapB; Provisional

Probab=89.33  E-value=3.7  Score=29.59  Aligned_cols=43  Identities=23%  Similarity=0.428  Sum_probs=34.4

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 036452          138 LNFKELKNMETRLEKGISRIRSKKNELLFAEIEYMQKREVDLHNSNQL  185 (244)
Q Consensus       138 Ls~~EL~~LE~~Le~~L~~Ir~rK~~ll~~~i~~l~kke~~l~een~~  185 (244)
                      ||++=|.+||..+..++..|-     ++.-+|+.|+.|...|.+++..
T Consensus         1 MS~EvleqLE~KIqqAvdtI~-----LLqmEieELKekn~~L~~e~~~   43 (79)
T PRK15422          1 MSLEVFEKLEAKVQQAIDTIT-----LLQMEIEELKEKNNSLSQEVQN   43 (79)
T ss_pred             CcHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHH
Confidence            578889999999999998774     7777888888887777766554

>PF10584 Proteasome_A_N: Proteasome subunit A N-terminal signature; InterPro: IPR000426 The proteasome (or macropain) (3

Probab=86.83  E-value=0.12  Score=28.49  Aligned_cols=14  Identities=43%  Similarity=0.805  Sum_probs=11.1

Q ss_pred             eeeEeeecCCcccc
Q 036452           62 VSLIVFSSRGRLYE   75 (244)
Q Consensus        62 ValIifS~~gkl~~   75 (244)
                      -.+.+|||+|+++.
T Consensus         3 ~~~t~FSp~Grl~Q   16 (23)
T PF10584_consen    3 RSITTFSPDGRLFQ   16 (23)
T ss_dssp             SSTTSBBTTSSBHH
T ss_pred             CCceeECCCCeEEe
Confidence            34668999999974

4.25.1 from EC) [, , , , ] is a eukaryotic and archaeal multicatalytic proteinase complex that seems to be involved in an ATP/ubiquitin-dependent nonlysosomal proteolytic pathway. In eukaryotes the proteasome is composed of about 28 distinct subunits which form a highly ordered ring-shaped structure (20S ring) of about 700 kDa. Most proteasome subunits can be classified, on the basis on sequence similarities into two groups, alpha (A) and beta (B). This family contains the alpha subunit sequences which range from 210 to 290 amino acids. These sequences are classified as non-peptidase homologues in MEROPS peptidase family T1 (clan PB(T)). ; GO: 0004175 endopeptidase activity, 0006511 ubiquitin-dependent protein catabolic process, 0019773 proteasome core complex, alpha-subunit complex; PDB: 3H4P_M 1IRU_O 3UN4_U 1FNT_A 3OEV_G 3OEU_U 3SDK_U 3DY3_G 3MG7_G 3L5Q_C ....

>COG3074 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=85.76  E-value=9.8  Score=26.83  Aligned_cols=50  Identities=20%  Similarity=0.360  Sum_probs=36.1

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 036452          138 LNFKELKNMETRLEKGISRIRSKKNELLFAEIEYMQKREVDLHNSNQLLRAKIAE  192 (244)
Q Consensus       138 Ls~~EL~~LE~~Le~~L~~Ir~rK~~ll~~~i~~l~kke~~l~een~~L~~~~~~  192 (244)
                      +|++=|.+||..+..++..|     .++.-+|+.|+.|...|..+-..++...+.
T Consensus         1 MSlEv~ekLE~KiqqAvdTI-----~LLQmEieELKEknn~l~~e~q~~q~~rea   50 (79)
T COG3074           1 MSLEVFEKLEAKVQQAIDTI-----TLLQMEIEELKEKNNSLSQEVQNAQHQREA   50 (79)
T ss_pred             CchHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHhhHhHHHHHHHHHHHHH
Confidence            57788889999998888766     377778888888777666555555444443

>PF06156 DUF972: Protein of unknown function (DUF972); InterPro: IPR010377 FUNCTION: Involved in initiation control of chromosome replication

Probab=84.29  E-value=9.1  Score=29.28  Aligned_cols=51  Identities=24%  Similarity=0.418  Sum_probs=37.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 036452          140 FKELKNMETRLEKGISRIRSKKNELLFAEIEYMQKREVDLHNSNQLLRAKIAENER  195 (244)
Q Consensus       140 ~~EL~~LE~~Le~~L~~Ir~rK~~ll~~~i~~l~kke~~l~een~~L~~~~~~~~~  195 (244)
                      ++.|.+||++|...+..|.+-|.++     ..+-.....|.-||..|+..+.+...
T Consensus         7 ~~~l~~le~~l~~l~~~~~~LK~~~-----~~l~EEN~~L~~EN~~Lr~~l~~~~~   57 (107)
T PF06156_consen    7 FDRLDQLEQQLGQLLEELEELKKQL-----QELLEENARLRIENEHLRERLEELEQ   57 (107)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            3567788888888887777666544     46666677778888888888876543

SUBUNIT: Interacts with both DnaA and DnaN, acting as a bridge between these two proteins. SIMILARITY: Belongs to the YabA family.

>cd07429 Cby_like Chibby, a nuclear inhibitor of Wnt/beta-catenin mediated transcription, and similar proteins

Probab=83.91  E-value=1.8  Score=33.16  Aligned_cols=23  Identities=30%  Similarity=0.446  Sum_probs=19.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHH
Q 036452          170 EYMQKREVDLHNSNQLLRAKIAE  192 (244)
Q Consensus       170 ~~l~kke~~l~een~~L~~~~~~  192 (244)
                      ..++++.+.|+|||+.|+.|++-
T Consensus        75 ~rlkkk~~~LeEENNlLklKiev   97 (108)
T cd07429          75 LRLKKKNQQLEEENNLLKLKIEV   97 (108)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHH
Confidence            45778899999999999999854

Chibby(Cby) is a well-conserved nuclear protein that functions as part of the Wnt/beta-catenin signaling pathway. Specifically, Cby binds directly to beta-catenin by interacting with its central region, which harbors armadillo repeats. Cby-beta-catenin interactions may also involve 14-3-3 proteins. By competing with other binding partners of beta-catenin, the Tcf/Lef transcription factors, Cby inhibits transcriptional activation. Cby has been shown to play a role in adipocyte differentiation. The C-terminal region of Cby appears to contain an alpha-helical coiled-coil motif.

>PF06698 DUF1192: Protein of unknown function (DUF1192); InterPro: IPR009579 This family consists of several short, hypothetical, bacterial proteins of around 60 residues in length

Probab=83.77  E-value=2.9  Score=28.59  Aligned_cols=32  Identities=34%  Similarity=0.465  Sum_probs=26.6

Q ss_pred             cccCCCCCCCCHHHHHHHHHHHHHHHHHHHHH
Q 036452          129 NMLGESLSGLNFKELKNMETRLEKGISRIRSK  160 (244)
Q Consensus       129 ~l~Ge~L~~Ls~~EL~~LE~~Le~~L~~Ir~r  160 (244)
                      +..|++|+.||++||..--..|+.-+.+++.-
T Consensus        12 ~~ig~dLs~lSv~EL~~RIa~L~aEI~R~~~~   43 (59)
T PF06698_consen   12 HEIGEDLSLLSVEELEERIALLEAEIARLEAA   43 (59)
T ss_pred             cccCCCchhcCHHHHHHHHHHHHHHHHHHHHH
Confidence            67899999999999999888887777776643

The function of this family is unknown.

>PRK13169 DNA replication intiation control protein YabA; Reviewed

Probab=82.13  E-value=12  Score=28.87  Aligned_cols=50  Identities=24%  Similarity=0.370  Sum_probs=38.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 036452          140 FKELKNMETRLEKGISRIRSKKNELLFAEIEYMQKREVDLHNSNQLLRAKIAENE  194 (244)
Q Consensus       140 ~~EL~~LE~~Le~~L~~Ir~rK~~ll~~~i~~l~kke~~l~een~~L~~~~~~~~  194 (244)
                      .+.|.+||++|...+..+.+-|.++     ..+-.....|+-||..||..+.+..
T Consensus         7 fd~l~~le~~l~~l~~el~~LK~~~-----~el~EEN~~L~iEN~~Lr~~l~~~~   56 (110)
T PRK13169          7 FDALDDLEQNLGVLLKELGALKKQL-----AELLEENTALRLENDKLRERLEELE   56 (110)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            4578889999988888887776654     4666777888888899998888753

>PF01166 TSC22: TSC-22/dip/bun family; InterPro: IPR000580 Several eukaryotic proteins are evolutionary related and are thought to be involved in transcriptional regulation

Probab=81.75  E-value=3.8  Score=27.82  Aligned_cols=27  Identities=30%  Similarity=0.514  Sum_probs=20.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 036452          163 ELLFAEIEYMQKREVDLHNSNQLLRAK  189 (244)
Q Consensus       163 ~ll~~~i~~l~kke~~l~een~~L~~~  189 (244)
                      +++.++|..|..+...|+.||..|+..
T Consensus        17 evLK~~I~eL~~~n~~Le~EN~~Lk~~   43 (59)
T PF01166_consen   17 EVLKEQIAELEERNSQLEEENNLLKQN   43 (59)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            466777788888888888888887644

These proteins are highly similar in a region of about 50 residues that include a conserved leucine-zipper domain most probably involved in homo- or hetero-dimerisation. Proteins containing this signature include: Vertebrate protein TSC-22 [], a transcriptional regulator which seems to act on C-type natriuretic peptide (CNP) promoter. Mammalian protein DIP (DSIP-immunoreactive peptide) [], a protein whose function is not yet known. Drosophila protein bunched [] (gene bun) (also known as shortsighted), a probable transcription factor required for peripheral nervous system morphogenesis, eye development and oogenesis. Caenorhabditis elegans hypothetical protein T18D3.7. ; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1DIP_B.

>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association []

Probab=81.65  E-value=11  Score=34.35  Aligned_cols=62  Identities=31%  Similarity=0.413  Sum_probs=45.6

Q ss_pred             CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 036452          133 ESLSGLNFKELKNMETRLEKGISRIRSKKNELL--FAEIEYMQKREVDLHNSNQLLRAKIAENE  194 (244)
Q Consensus       133 e~L~~Ls~~EL~~LE~~Le~~L~~Ir~rK~~ll--~~~i~~l~kke~~l~een~~L~~~~~~~~  194 (244)
                      ..++.++.++|..+...|...-..|..+|..+-  ..++..++.+...+.++-..+..+|.+.+
T Consensus       201 ~e~~~~D~~eL~~lr~eL~~~~~~i~~~k~~l~el~~el~~l~~~i~~~~~~k~~l~~eI~e~~  264 (325)
T PF08317_consen  201 EEIESCDQEELEALRQELAEQKEEIEAKKKELAELQEELEELEEKIEELEEQKQELLAEIAEAE  264 (325)
T ss_pred             hhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            458899999999999999999888888777653  35555666666666666666666666544

>smart00787 Spc7 Spc7 kinetochore protein

Probab=80.88  E-value=12  Score=34.10  Aligned_cols=62  Identities=27%  Similarity=0.337  Sum_probs=43.3

Q ss_pred             CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 036452          133 ESLSGLNFKELKNMETRLEKGISRIRSKKNELLF--AEIEYMQKREVDLHNSNQLLRAKIAENE  194 (244)
Q Consensus       133 e~L~~Ls~~EL~~LE~~Le~~L~~Ir~rK~~ll~--~~i~~l~kke~~l~een~~L~~~~~~~~  194 (244)
                      +.++.++.++|..+...|..-...|..++.++-.  +++..+..+.....+.-..+..+|.+.+
T Consensus       196 ~e~~~~d~~eL~~lk~~l~~~~~ei~~~~~~l~e~~~~l~~l~~~I~~~~~~k~e~~~~I~~ae  259 (312)
T smart00787      196 DELEDCDPTELDRAKEKLKKLLQEIMIKVKKLEELEEELQELESKIEDLTNKKSELNTEIAEAE  259 (312)
T ss_pred             HHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            5688999999999999999999988887776532  4444555555555555555555565544

This domain is found in cell division proteins which are required for kinetochore-spindle association.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	244
1tqe_P	93	Mechanism Of Recruitment Of Class Ii Histone Deacet		6e-17
3kov_A	90	Structure Of Mef2a Bound To Dna Reveals A Completel		3e-16
1egw_A	77	Crystal Structure Of Mef2a Core Bound To Dna Length		3e-16
1n6j_A	93	Structural Basis Of Sequence-Specific Recruitment O		3e-16
3mu6_A	71	Inhibiting The Binding Of Class Iia Histone Deacety		3e-16
1c7u_A	85	Complex Of The Dna Binding Core Domain Of The Trans		7e-16
1mnm_A	100	Yeast Matalpha2MCM1DNA TERNARY TRANSCRIPTION COMPLE		1e-11
1k6o_B	103	Crystal Structure Of A Ternary Sap-1SRFC-Fos Sre Dn		5e-09
1srs_A	92	Serum Response Factor (Srf) Core Complexed With Spe		7e-09

>pdb|1TQE|P Chain P, Mechanism Of Recruitment Of Class Ii Histone Deacetylases By Myocyte Enhancer Factor-2 Length = 93

Iteration: 1
 Score = 84.3 bits (207), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 38/69 (55%), Positives = 53/69 (76%)
Query: 20 MGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVSLIVFSSRGRLYEYSNN 79
          MGR KI+I RI +  NRQVTF KR+ GL+KKAYELSVLCD E++LI+F+S  RL++Y++ 
Sbjct: 1  MGRKKIQISRILDQRNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNSANRLFQYAST 60
Query: 80 SVKSTIDRY 88
           +   + +Y
Sbjct: 61 DMDRVLLKY 69

>pdb|3KOV|A Chain A, Structure Of Mef2a Bound To Dna Reveals A Completely Folded Mads-BoxMEF2 DOMAIN THAT RECOGNIZES DNA AND RECRUITS Transcription Co-Factors Length = 90

Iteration: 1
 Score = 81.6 bits (200), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 36/68 (52%), Positives = 52/68 (76%)
Query: 21 GRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVSLIVFSSRGRLYEYSNNS 80
          GR KI+I RI +  NRQVTF KR+ GL+KKAYELSVLCD E++LI+F+S  +L++Y++  
Sbjct: 1  GRKKIQITRIMDERNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNSSNKLFQYASTD 60
Query: 81 VKSTIDRY 88
          +   + +Y
Sbjct: 61 MDKVLLKY 68

>pdb|1EGW|A Chain A, Crystal Structure Of Mef2a Core Bound To Dna Length = 77

Iteration: 1
 Score = 81.6 bits (200), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 36/68 (52%), Positives = 52/68 (76%)
Query: 21 GRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVSLIVFSSRGRLYEYSNNS 80
          GR KI+I RI +  NRQVTF KR+ GL+KKAYELSVLCD E++LI+F+S  +L++Y++  
Sbjct: 1  GRKKIQITRIMDERNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNSSNKLFQYASTD 60
Query: 81 VKSTIDRY 88
          +   + +Y
Sbjct: 61 MDKVLLKY 68

>pdb|1N6J|A Chain A, Structural Basis Of Sequence-Specific Recruitment Of Histone Deacetylases By Myocyte Enhancer Factor-2 Length = 93

Iteration: 1
 Score = 81.6 bits (200), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 37/68 (54%), Positives = 52/68 (76%)
Query: 21 GRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVSLIVFSSRGRLYEYSNNS 80
          GR KI+I RI +  NRQVTF KR+ GL+KKAYELSVLCD E++LI+F+S  RL++Y++  
Sbjct: 1  GRKKIQISRILDQRNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNSANRLFQYASTD 60
Query: 81 VKSTIDRY 88
          +   + +Y
Sbjct: 61 MDRVLLKY 68

>pdb|3MU6|A Chain A, Inhibiting The Binding Of Class Iia Histone Deacetylases To Myocyte Enhancer Factor-2 By Small Molecules Length = 71

Iteration: 1
 Score = 81.6 bits (200), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 36/68 (52%), Positives = 52/68 (76%)
Query: 21 GRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVSLIVFSSRGRLYEYSNNS 80
          GR KI+I RI +  NRQVTF KR+ GL+KKAYELSVLCD E++LI+F+S  +L++Y++  
Sbjct: 1  GRKKIQITRIMDERNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNSSNKLFQYASTD 60
Query: 81 VKSTIDRY 88
          +   + +Y
Sbjct: 61 MDKVLLKY 68

>pdb|1C7U|A Chain A, Complex Of The Dna Binding Core Domain Of The Transcription Factor Mef2a With A 20mer Oligonucleotide Length = 85

Iteration: 1
 Score = 80.5 bits (197), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 36/68 (52%), Positives = 52/68 (76%)
Query: 21 GRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVSLIVFSSRGRLYEYSNNS 80
          GR KI+I RI +  NRQVTF KR+ GL+KKAYELSVL DAE++LI+F+S  +L++Y++  
Sbjct: 1  GRKKIQITRIMDERNRQVTFTKRKFGLMKKAYELSVLADAEIALIIFNSSNKLFQYASTD 60
Query: 81 VKSTIDRY 88
          +   + +Y
Sbjct: 61 MDKVLLKY 68

>pdb|1MNM|A Chain A, Yeast Matalpha2MCM1DNA TERNARY TRANSCRIPTION COMPLEX Crystal Structure Length = 100

Iteration: 1
 Score = 66.2 bits (160), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 32/57 (56%), Positives = 41/57 (71%)
Query: 22 RGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVSLIVFSSRGRLYEYSN 78
          R KIEIK IEN T R VTF KR++G++KKA+ELSVL   +V L+V S  G +Y +S 
Sbjct: 18 RRKIEIKFIENKTRRHVTFSKRKHGIMKKAFELSVLTGTQVLLLVVSETGLVYTFST 74

>pdb|1K6O|B Chain B, Crystal Structure Of A Ternary Sap-1SRFC-Fos Sre Dna Complex Length = 103

Iteration: 1
 Score = 57.8 bits (138), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 28/69 (40%), Positives = 43/69 (62%)
Query: 17 KRKMGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVSLIVFSSRGRLYEY 76
          K+  GR KI+++ I+N   R  TF KR+ G++KKAYELS L   +V L+V S  G +Y +
Sbjct: 6  KKTRGRVKIKMEFIDNKLRRYTTFSKRKTGIMKKAYELSTLTGTQVLLLVASETGHVYTF 65
Query: 77 SNNSVKSTI 85
          +   ++  I
Sbjct: 66 ATRKLQPMI 74

>pdb|1SRS|A Chain A, Serum Response Factor (Srf) Core Complexed With Specific Sre Dna Length = 92

Iteration: 1
 Score = 57.4 bits (137), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 28/69 (40%), Positives = 43/69 (62%)
Query: 17 KRKMGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVSLIVFSSRGRLYEY 76
          K+  GR KI+++ I+N   R  TF KR+ G++KKAYELS L   +V L+V S  G +Y +
Sbjct: 7  KKTRGRVKIKMEFIDNKLRRYTTFSKRKTGIMKKAYELSTLTGTQVLLLVASETGHVYTF 66
Query: 77 SNNSVKSTI 85
          +   ++  I
Sbjct: 67 ATRKLQPMI 75

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	244
1hbx_A	92	SRF, serum response factor; gene regulation, trans	1e-42
1mnm_A	100	Protein (MCM1 transcriptional regulator); transcri	2e-42
3p57_A	90	Myocyte-specific enhancer factor 2A; protein-DNA c	4e-42
1egw_A	77	MADS box transcription enhancer factor 2, polypept	1e-41
1k6o_B	103	SRF, serum response factor; protein/DNA complex, t	2e-41

>1hbx_A SRF, serum response factor; gene regulation, transcription complex; 3.15A {Homo sapiens} SCOP: d.88.1.1 PDB: 1srs_A* Length = 92

 Score =  139 bits (351), Expect = 1e-42
 Identities = 29/86 (33%), Positives = 45/86 (52%)

Query: 15  SPKRKMGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVSLIVFSSRGRLY 74
             K+  GR KI+++ I+N   R  TF KR+ G++KKAYELS L   +V L+V S  G +Y
Sbjct: 5   PGKKTRGRVKIKMEFIDNKLRRYTTFSKRKTGIMKKAYELSTLTGTQVLLLVASETGHVY 64

Query: 75  EYSNNSVKSTIDRYKKATADTSNTGS 100
            ++   ++  I          +   S
Sbjct: 65  TFATRKLQPMITSETGKALIQTCLNS 90

>1mnm_A Protein (MCM1 transcriptional regulator); transcription regulation, transcriptional repression, DNA- binding protein; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: d.88.1.1 Length = 100

 Score =  138 bits (350), Expect = 2e-42
 Identities = 32/81 (39%), Positives = 48/81 (59%)

Query: 12 EELSPKRKMGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVSLIVFSSRG 71
             +  ++  R KIEIK IEN T R VTF KR++G++KKA+ELSVL   +V L+V S  G
Sbjct: 8  TPTNNGQQKERRKIEIKFIENKTRRHVTFSKRKHGIMKKAFELSVLTGTQVLLLVVSETG 67

Query: 72 RLYEYSNNSVKSTIDRYKKAT 92
           +Y +S    +  + + +   
Sbjct: 68 LVYTFSTPKFEPIVTQQEGRN 88

>3p57_A Myocyte-specific enhancer factor 2A; protein-DNA complex, transcription factor, transcriptional activation, zinc finger; HET: DNA; 2.19A {Homo sapiens} PDB: 3kov_A* 1tqe_P 1n6j_A Length = 90

 Score =  137 bits (347), Expect = 4e-42
 Identities = 38/90 (42%), Positives = 59/90 (65%), Gaps = 3/90 (3%)

Query: 21  GRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVSLIVFSSRGRLYEYSNNS 80
           GR KI+I RI +  NRQVTF KR+ GL+KKAYELSVLCD E++LI+F+S  +L++Y++  
Sbjct: 1   GRKKIQITRIMDERNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNSSNKLFQYASTD 60

Query: 81  VKSTIDRYKKATA---DTSNTGSICEANAQ 107
           +   + +Y +        +N+  +   N +
Sbjct: 61  MDKVLLKYTEYNEPHESRTNSDIVEALNKK 90

>1egw_A MADS box transcription enhancer factor 2, polypeptide A; MADS-box transcription factor, DNA/protein complex, transcription/DNA; HET: DNA; 1.50A {Homo sapiens} SCOP: d.88.1.1 PDB: 1c7u_A 3mu6_A* Length = 77

 Score =  135 bits (343), Expect = 1e-41
 Identities = 36/74 (48%), Positives = 53/74 (71%)

Query: 21 GRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVSLIVFSSRGRLYEYSNNS 80
          GR KI+I RI +  NRQVTF KR+ GL+KKAYELSVLCD E++LI+F+S  +L++Y++  
Sbjct: 1  GRKKIQITRIMDERNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNSSNKLFQYASTD 60

Query: 81 VKSTIDRYKKATAD 94
          +   + +Y +    
Sbjct: 61 MDKVLLKYTEYNEP 74

>1k6o_B SRF, serum response factor; protein/DNA complex, transcription factor, combinatorial gene regulation, ETS proteins, MADS-box proteins; 3.19A {Homo sapiens} SCOP: d.88.1.1 Length = 103

 Score =  136 bits (344), Expect = 2e-41
 Identities = 28/78 (35%), Positives = 43/78 (55%)

Query: 15 SPKRKMGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVSLIVFSSRGRLY 74
            K+  GR KI+++ I+N   R  TF KR+ G++KKAYELS L   +V L+V S  G +Y
Sbjct: 4  PGKKTRGRVKIKMEFIDNKLRRYTTFSKRKTGIMKKAYELSTLTGTQVLLLVASETGHVY 63

Query: 75 EYSNNSVKSTIDRYKKAT 92
           ++   ++  I       
Sbjct: 64 TFATRKLQPMITSETGKA 81

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	244
1egw_A	77	MADS box transcription enhancer factor 2, polypept	100.0
3p57_A	90	Myocyte-specific enhancer factor 2A; protein-DNA c	100.0
1hbx_A	92	SRF, serum response factor; gene regulation, trans	100.0
1mnm_A	100	Protein (MCM1 transcriptional regulator); transcri	100.0
1k6o_B	103	SRF, serum response factor; protein/DNA complex, t	100.0
2jee_A	81	YIIU; FTSZ, septum, coiled-coil, cell division, ce	90.91

>1egw_A MADS box transcription enhancer factor 2, polypeptide A; MADS-box transcription factor, DNA/protein complex, transcription/DNA; HET: DNA; 1.50A {Homo sapiens} SCOP: d.88.1.1 PDB: 1c7u_A 3mu6_A*

Probab=100.00  E-value=2.9e-39  Score=231.77  Aligned_cols=73  Identities=49%  Similarity=0.874  Sum_probs=70.1

Q ss_pred             CccccceeeecCCCCcceehhcccchhhhhhhhhhcccccceeeEeeecCCccccccCcchhhhHHHHhhhcc
Q 036452           21 GRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVSLIVFSSRGRLYEYSNNSVKSTIDRYKKATA   93 (244)
Q Consensus        21 gR~Ki~ik~Ien~~~RqvTFsKRr~GL~KKA~ELSvLCdaeValIifS~~gkl~~f~s~sm~~iieRY~~~~~   93 (244)
                      ||+||+|++|||.++|||||+|||+||||||+||||||||+||||||||+|++|+|+|++|++||+||+..+.
T Consensus         1 GR~Ki~ik~I~n~~~R~vTfsKRr~GL~KKA~ELsvLCdaeV~livfs~~gk~~~~~s~~~~~il~ry~~~~~   73 (77)
T 1egw_A            1 GRKKIQITRIMDERNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNSSNKLFQYASTDMDKVLLKYTEYNE   73 (77)
T ss_dssp             CCSCCCSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEEEEECTTCCEEEEESSCHHHHHHHHHHC--
T ss_pred             CCceeeeEEecCchHHHHHHHHhHHHHHHHHHHHhcccCCeEEEEEECCCCCEeeCCCCCHHHHHHHHHhccC
Confidence            8999999999999999999999999999999999999999999999999999999999999999999998654

>3p57_A Myocyte-specific enhancer factor 2A; protein-DNA complex, transcription factor, transcriptional activation, zinc finger; HET: DNA; 2.19A {Homo sapiens} PDB: 3kov_A* 1tqe_P 1n6j_A

Probab=100.00  E-value=1.1e-38  Score=234.24  Aligned_cols=75  Identities=48%  Similarity=0.846  Sum_probs=72.4

Q ss_pred             CccccceeeecCCCCcceehhcccchhhhhhhhhhcccccceeeEeeecCCccccccCcchhhhHHHHhhhccCC
Q 036452           21 GRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVSLIVFSSRGRLYEYSNNSVKSTIDRYKKATADT   95 (244)
Q Consensus        21 gR~Ki~ik~Ien~~~RqvTFsKRr~GL~KKA~ELSvLCdaeValIifS~~gkl~~f~s~sm~~iieRY~~~~~~~   95 (244)
                      ||+||+|++|||.++|||||+|||+||||||+||||||||+||||||||+|++|+|+|++|..||+||+..+...
T Consensus         1 GR~Ki~ik~Ien~~~R~vTFsKRr~GL~KKA~ELsvLCda~Valiifs~~gk~~~f~s~~~~~il~rY~~~~~~~   75 (90)
T 3p57_A            1 GRKKIQITRIMDERNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNSSNKLFQYASTDMDKVLLKYTEYNEPH   75 (90)
T ss_dssp             CCSCCCSSCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHTCEEEEEEECTTCCEEEEESSCHHHHHHHHHHCCSCC
T ss_pred             CCCcceeEEecCchHHHHHHHHhhhhHHHHHHHHHhccCCceEEEEECCCCCEEEeCCCCHHHHHHHHHhcCccc
Confidence            899999999999999999999999999999999999999999999999999999999999999999999877543

>1hbx_A SRF, serum response factor; gene regulation, transcription complex; 3.15A {Homo sapiens} SCOP: d.88.1.1 PDB: 1srs_A*

Probab=100.00  E-value=1.7e-38  Score=234.19  Aligned_cols=79  Identities=35%  Similarity=0.567  Sum_probs=72.4

Q ss_pred             ccccCcccCCCccccceeeecCCCCcceehhcccchhhhhhhhhhcccccceeeEeeecCCccccccCcchhhhHHHHh
Q 036452           11 REELSPKRKMGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVSLIVFSSRGRLYEYSNNSVKSTIDRYK   89 (244)
Q Consensus        11 ~~~~~~~~~MgR~Ki~ik~Ien~~~RqvTFsKRr~GL~KKA~ELSvLCdaeValIifS~~gkl~~f~s~sm~~iieRY~   89 (244)
                      +|....++.|||+||+|++|||.++|||||+|||+||||||+||||||||+||||||||+|++|+|+||+|..+|++|.
T Consensus         1 ~~~~~~k~~mgR~Ki~ik~Ien~~~R~vTFsKRr~GL~KKA~ELsvLCda~V~livfs~~gk~~~f~s~~~~~~i~~~~   79 (92)
T 1hbx_A            1 SGAKPGKKTRGRVKIKMEFIDNKLRRYTTFSKRKTGIMKKAYELSTLTGTQVLLLVASETGHVYTFATRKLQPMITSET   79 (92)
T ss_dssp             -----CCSSCCSCCCCSSCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEECTTSCEEEEECGGGGGGTSSHH
T ss_pred             CCcCcCCCCCCcceEEEEEecChhHHHHHHHHhhhhHHHHHHHHHhhcCCceEEEEECCCCCEEEecCCCHHHHHhhhc
Confidence            3667788999999999999999999999999999999999999999999999999999999999999999999999874

>1mnm_A Protein (MCM1 transcriptional regulator); transcription regulation, transcriptional repression, DNA- binding protein; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: d.88.1.1

Probab=100.00  E-value=3.1e-38  Score=235.76  Aligned_cols=75  Identities=43%  Similarity=0.651  Sum_probs=70.7

Q ss_pred             cccCCCccccceeeecCCCCcceehhcccchhhhhhhhhhcccccceeeEeeecCCccccccCcchhhhHHHHhh
Q 036452           16 PKRKMGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVSLIVFSSRGRLYEYSNNSVKSTIDRYKK   90 (244)
Q Consensus        16 ~~~~MgR~Ki~ik~Ien~~~RqvTFsKRr~GL~KKA~ELSvLCdaeValIifS~~gkl~~f~s~sm~~iieRY~~   90 (244)
                      +++.|||+||+|++|||.++|||||+|||+||||||+||||||||+||||||||+|++|+|+||++..|+++|..
T Consensus        12 ~~~~mgR~Ki~ik~Ien~~~R~vTFsKRr~GL~KKA~ELsvLCda~Valivfs~~gk~~~f~sps~~~il~r~~G   86 (100)
T 1mnm_A           12 NGQQKERRKIEIKFIENKTRRHVTFSKRKHGIMKKAFELSVLTGTQVLLLVVSETGLVYTFSTPKFEPIVTQQEG   86 (100)
T ss_dssp             ---CCCCCCCCSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHTCEEEEEEECTTCCEEEEECTTTTHHHHSHHH
T ss_pred             CCCCCCccceeeEEecCcchhhhhhhHhhhhHHHHHHHHHHhcCCcEEEEEecCCCCcceecCCCHHHHHHHhhC
Confidence            689999999999999999999999999999999999999999999999999999999999999999999999964

>1k6o_B SRF, serum response factor; protein/DNA complex, transcription factor, combinatorial gene regulation, ETS proteins, MADS-box proteins; 3.19A {Homo sapiens} SCOP: d.88.1.1

Probab=100.00  E-value=6.6e-38  Score=235.40  Aligned_cols=82  Identities=34%  Similarity=0.569  Sum_probs=74.6

Q ss_pred             cCcccCCCccccceeeecCCCCcceehhcccchhhhhhhhhhcccccceeeEeeecCCccccccCcchhhhHHH-----H
Q 036452           14 LSPKRKMGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVSLIVFSSRGRLYEYSNNSVKSTIDR-----Y   88 (244)
Q Consensus        14 ~~~~~~MgR~Ki~ik~Ien~~~RqvTFsKRr~GL~KKA~ELSvLCdaeValIifS~~gkl~~f~s~sm~~iieR-----Y   88 (244)
                      ...++.|||+||+|++|||.++|||||+|||+||||||+||||||||+||||||||+|++|+|+||+|..+|++     |
T Consensus         3 ~~~k~~mgR~Ki~ik~Ien~~~R~vTFsKRr~GL~KKA~ELsvLCda~Valivfs~~gk~~~f~s~~~~~vi~~~~Gk~l   82 (103)
T 1k6o_B            3 KPGKKTRGRVKIKMEFIDNKLRRYTTFSKRKTGIMKKAYELSTLTGTQVLLLVASETGHVYTFATRKLQPMITSETGKAL   82 (103)
T ss_dssp             --CCSSCCSCCCCSSCCCCHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEEEEECSSSCEEEEECGGGGGGTSSHHHHHH
T ss_pred             CCCCCCCCcceeEEEEecCchHHHHhHhHhhHhHHHHHHHHHhhhCCceEEEEEeCCCCeeeecCccHHHHHHhhhhhHH
Confidence            45677899999999999999999999999999999999999999999999999999999999999999999998     5


Q ss_pred             hhhccCC
Q 036452           89 KKATADT   95 (244)
Q Consensus        89 ~~~~~~~   95 (244)
                      ..++...
T Consensus        83 ~~~c~~~   89 (103)
T 1k6o_B           83 IQTCLNS   89 (103)
T ss_dssp             HHHTTCC
T ss_pred             HHHHhcC
Confidence            5555443

>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}

Probab=90.91  E-value=1.7  Score=30.53  Aligned_cols=44  Identities=23%  Similarity=0.409  Sum_probs=34.7

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 036452          138 LNFKELKNMETRLEKGISRIRSKKNELLFAEIEYMQKREVDLHNSNQLL  186 (244)
Q Consensus       138 Ls~~EL~~LE~~Le~~L~~Ir~rK~~ll~~~i~~l~kke~~l~een~~L  186 (244)
                      +|++=|.+||..+..++..|-     ++..+|+.|+.+...|..++..+
T Consensus         3 MS~ElleqLE~KIq~avdtI~-----lLqmEieELKekN~~L~~e~~e~   46 (81)
T 2jee_A            3 MSLEVFEKLEAKVQQAIDTIT-----LLQMEIEELKEKNNSLSQEVQNA   46 (81)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CcHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHH
Confidence            688889999999999998764     66777788888877766666553

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	244
d1egwa_	71	d.88.1.1 (A:) Myocyte enhancer factor Mef2a core {	2e-36
d1srsa_	84	d.88.1.1 (A:) Serum response factor (SRF) core {Hu	2e-34
d1mnma_	85	d.88.1.1 (A:) MCM1 transcriptional regulator {Bake	5e-34

>d1egwa_ d.88.1.1 (A:) Myocyte enhancer factor Mef2a core {Human (Homo sapiens) [TaxId: 9606]} Length = 71

class: Alpha and beta proteins (a+b)
fold: SRF-like
superfamily: SRF-like
family: SRF-like
domain: Myocyte enhancer factor Mef2a core
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  121 bits (305), Expect = 2e-36
 Identities = 36/70 (51%), Positives = 53/70 (75%)

Query: 21 GRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVSLIVFSSRGRLYEYSNNS 80
          GR KI+I RI +  NRQVTF KR+ GL+KKAYELSVLCD E++LI+F+S  +L++Y++  
Sbjct: 1  GRKKIQITRIMDERNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNSSNKLFQYASTD 60

Query: 81 VKSTIDRYKK 90
          +   + +Y +
Sbjct: 61 MDKVLLKYTE 70

>d1srsa_ d.88.1.1 (A:) Serum response factor (SRF) core {Human (Homo sapiens) [TaxId: 9606]} Length = 84

class: Alpha and beta proteins (a+b)
fold: SRF-like
superfamily: SRF-like
family: SRF-like
domain: Serum response factor (SRF) core
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  116 bits (293), Expect = 2e-34
 Identities = 27/71 (38%), Positives = 41/71 (57%)

Query: 20 MGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVSLIVFSSRGRLYEYSNN 79
           GR KI+++ I+N   R  TF KR+ G++KKAYELS L   +V L+V S  G +Y ++  
Sbjct: 2  RGRVKIKMEFIDNKLRRYTTFSKRKTGIMKKAYELSTLTGTQVLLLVASETGHVYTFATR 61

Query: 80 SVKSTIDRYKK 90
           ++  I     
Sbjct: 62 KLQPMITSETG 72

>d1mnma_ d.88.1.1 (A:) MCM1 transcriptional regulator {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 85

class: Alpha and beta proteins (a+b)
fold: SRF-like
superfamily: SRF-like
family: SRF-like
domain: MCM1 transcriptional regulator
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score =  115 bits (290), Expect = 5e-34
 Identities = 32/70 (45%), Positives = 45/70 (64%)

Query: 21 GRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVSLIVFSSRGRLYEYSNNS 80
           R KIEIK IEN T R VTF KR++G++KKA+ELSVL   +V L+V S  G +Y +S   
Sbjct: 3  ERRKIEIKFIENKTRRHVTFSKRKHGIMKKAFELSVLTGTQVLLLVVSETGLVYTFSTPK 62

Query: 81 VKSTIDRYKK 90
           +  + + + 
Sbjct: 63 FEPIVTQQEG 72

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	244
d1egwa_	71	Myocyte enhancer factor Mef2a core {Human (Homo sa	100.0
d1srsa_	84	Serum response factor (SRF) core {Human (Homo sapi	100.0
d1mnma_	85	MCM1 transcriptional regulator {Baker's yeast (Sac	100.0

>d1egwa_ d.88.1.1 (A:) Myocyte enhancer factor Mef2a core {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: SRF-like
superfamily: SRF-like
family: SRF-like
domain: Myocyte enhancer factor Mef2a core
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.4e-38  Score=222.79  Aligned_cols=70  Identities=51%  Similarity=0.919  Sum_probs=69.0

Q ss_pred             CccccceeeecCCCCcceehhcccchhhhhhhhhhcccccceeeEeeecCCccccccCcchhhhHHHHhh
Q 036452           21 GRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVSLIVFSSRGRLYEYSNNSVKSTIDRYKK   90 (244)
Q Consensus        21 gR~Ki~ik~Ien~~~RqvTFsKRr~GL~KKA~ELSvLCdaeValIifS~~gkl~~f~s~sm~~iieRY~~   90 (244)
                      ||+||+|++|||+.+|+|||+|||+||||||.||||||||+||||||||+|++|+|+||++++|++||..
T Consensus         1 GR~Ki~ik~Ie~~~~R~vTFsKRk~GL~KKa~ELs~LC~~~valiv~s~~gk~~~f~s~~~~~vl~ry~~   70 (71)
T d1egwa_           1 GRKKIQITRIMDERNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNSSNKLFQYASTDMDKVLLKYTE   70 (71)
T ss_dssp             CCSCCCSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEEEEECTTCCEEEEESSCHHHHHHHHHH
T ss_pred             CCccceEEeccCCchheeehhHhhhhHHHHHHHHhhccCCcEEEEEEcCCCCEEEeeCCCHHHHHHHHhc
Confidence            8999999999999999999999999999999999999999999999999999999999999999999975

>d1srsa_ d.88.1.1 (A:) Serum response factor (SRF) core {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: SRF-like
superfamily: SRF-like
family: SRF-like
domain: Serum response factor (SRF) core
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.1e-36  Score=218.62  Aligned_cols=72  Identities=38%  Similarity=0.609  Sum_probs=70.1

Q ss_pred             CCCccccceeeecCCCCcceehhcccchhhhhhhhhhcccccceeeEeeecCCccccccCcchhhhHHHHhh
Q 036452           19 KMGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVSLIVFSSRGRLYEYSNNSVKSTIDRYKK   90 (244)
Q Consensus        19 ~MgR~Ki~ik~Ien~~~RqvTFsKRr~GL~KKA~ELSvLCdaeValIifS~~gkl~~f~s~sm~~iieRY~~   90 (244)
                      .+||+||+|++|||+..|+|||+|||.||||||+||||||||+||||||||+|++|+|+||+++.+|++|..
T Consensus         1 ~~GR~Ki~i~~Ie~~~~R~vTFsKRr~GL~KKa~ELs~Lc~~~v~liv~s~~gk~~~f~s~~~~~vi~~~~~   72 (84)
T d1srsa_           1 TRGRVKIKMEFIDNKLRRYTTFSKRKTGIMKKAYELSTLTGTQVLLLVASETGHVYTFATRKLQPMITSETG   72 (84)
T ss_dssp             CCCCCCCCSSCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEECTTCCEEEEECGGGHHHHSSHHH
T ss_pred             CCCCceeeEEeecCcchhhhhhHHhhhhHHHHHHHHhcccCCcEEEEEEcCCCCEEEeeCCCHHHHHHHHHH
Confidence            479999999999999999999999999999999999999999999999999999999999999999999974

>d1mnma_ d.88.1.1 (A:) MCM1 transcriptional regulator {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: SRF-like
superfamily: SRF-like
family: SRF-like
domain: MCM1 transcriptional regulator
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=3.1e-36  Score=217.49  Aligned_cols=73  Identities=44%  Similarity=0.663  Sum_probs=70.5

Q ss_pred             CCccccceeeecCCCCcceehhcccchhhhhhhhhhcccccceeeEeeecCCccccccCcchhhhHHHHhhhc
Q 036452           20 MGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVSLIVFSSRGRLYEYSNNSVKSTIDRYKKAT   92 (244)
Q Consensus        20 MgR~Ki~ik~Ien~~~RqvTFsKRr~GL~KKA~ELSvLCdaeValIifS~~gkl~~f~s~sm~~iieRY~~~~   92 (244)
                      -||+||+|++|+|..+|+|||+|||+||||||+||||||||+||||||||+|++|+|+||+|+.||+||....
T Consensus         2 k~R~Ki~i~~I~~~~~R~vTFsKRr~GL~KKa~ELsvLc~a~vaviv~s~~gk~~~f~sp~v~~vl~r~~~~~   74 (85)
T d1mnma_           2 KERRKIEIKFIENKTRRHVTFSKRKHGIMKKAFELSVLTGTQVLLLVVSETGLVYTFSTPKFEPIVTQQEGRN   74 (85)
T ss_dssp             CCCCCCCSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHTCEEEEEEECTTCCEEEEECTTTTHHHHSHHHHH
T ss_pred             CCccceEEEEecCCchhhhhhHHHHhhHHHHHHHHhccCCCcEEEEEEcCCCCEEeccCCCHHHHHHHHhccc
Confidence            4899999999999999999999999999999999999999999999999999999999999999999998643