Citrus Sinensis ID: 036454

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410
Protein Sequence
EIFDLQEVNSEETHSGAATQLRELHVFHLPKLTKLWNKDPQGKLIFRNLVVVRIFDCQSLKNIFPTSIARSLLRLETLSIKDCGSVEEIVANDGRGNDAATKFIFPSLTFLRLRDLPDLTTFYSGMHILECPELRKLEVNHVDVFANLEELTLSKCIFTTWRQAQFHKLKILHFISDGSDFFQVGLLQNIHNLEKLVLSTCEYKKIFSCEEVEEHAEGIAQIKSLKLKKLWLIEEHLWNPDSKLDSFLQNLEFLEVKKCALSLISLVPSSASFRNLTVLKVCNCWQLISLVTPQTAKTLVQLRELRVSECNRLEEIVANDGDADDEIVFSKLKWLFLESSESITSFCSGNYAFSFPSLEDLIVENCPKLNTFSAGVLKTPRLQAVQNWELGEDFWAGDVNTTLQHLKEKV
Secondary Structure (PSIPRED)
cEEEEcccccccccccccccccEEEEcccccccEEcccccccccccccccEEEEEcccccccccccccccccccccEEEEEcccccEEEccccccccccccccccccccEEEEEcccccccccccccccccccccEEEEccccccccccEEEccccccccccccccccccEEEEEcccccccccccccccccccEEEEcccccEEEEccHHHHHHHcccccccEEEEcccccccccccccccccccccccccEEEEEccccccccccccccccccccEEEEEcccccccccccccccccccccEEEEcccccccEEEccccccccccccccccEEEEccccccccccccccccccccccEEEEEcccccccccccccccccccEEEcccccccccccccHHHHHHHHHcc
Secondary Structure Prediction (SSPRO)
cEEEEcccccccccccccccccEEEEcccccHHHHccccccccccccccEEEEEcccccHHHcccHHHHHHHHHHcEEEEcccccHHEEEEccccccccccEEEcccccEEEEcccHHHHHHcccccccccccccEEEEcccccccccccccHHccccccccccccccHHHHHHcccccccccHHHHHHccccHEEEEcccccEEEEcccHHHHHHHHHcHEEEcccHHHHHHHHHHcccccccccccccccEEEcccccccccccccccEEccccEEEEEEccccHHHEccHHHHHHHHHHcEEEEcccHHHEEEEEccccccccEEcccccEEEEcccHcHHHccccccccccccccEEEEEcccccEEEccccccccccEEEEEcccccccccccHHHHHHHHHHcc
Coil and Loop (DISEMBL)
eifdlqevnseethsgaATQLRELHvfhlpkltklwnkdpqgkliFRNLVVVRIFdcqslknifptSIARSLLRLEtlsikdcgsVEEIVandgrgndaatkfifpsltflrlrdlpdlttfysgmhilecpelrklevnHVDVFANLEELTLSKCIFTTWRQAQFHKLKILHFisdgsdffqVGLLQNIHNLEKLVLSTCEYKKIFSCEEVEEHAEGIAQIKSLKLKKLWLIEEhlwnpdskldSFLQNLEFLEVKKCALSLISlvpssasfrnltvlkvcncwqlislvtpQTAKTLVQLRELRVSECNRLEEivandgdaddeIVFSKLKWLFlessesitsfcsgnyafsfpsledlivencpklntfsagvlktprlqAVQNWElgedfwagdVNTTLQHLKEKV
Flexible Loop (DISEMBL)
eifdlqevnseethsgaatqlrELHVFHLPKltklwnkdpqgKLIFRNLVVVRIFDCQSLKNIFPTSIARSLLRLETLSIKDCGSVEEIVandgrgndaaTKFIFPSLTFLRLRDLPDLTTFYSGMHILECPELRKLEVNHVDVFANLEELTLSKCIFTTWRQAQFHKLKILHFISDGSDFFQVGLLQNIHNLEKLVLSTCEYKKIFSCEEVEEHAEGIAQIKSLKLKKLWLIEEHLWNPDSKLDSFLQNLEFLEVKKCALSLISLVPSSASFRNLTVLKVCNCWQLISLVTPQTAKTLVQLRELRVSECNRLEeivandgdaddeIVFSKLKWLFLESSESITSFCSGNYAFSFPSLEDLIVENCPKLNTFSAGVLKTPRLQAVQNWELGEDFWAGDVNTTLQHLKEKV
Low Complexity Region (SEG)
EIFDLQEVNSEETHSGAATQLRELHVFHLPKLTKLWNKDPQGKLIFRNLVVVRIFDCQSLKNIFPTSIARSLLRLETLSIKDCGSVEEIVANDGRGNDAATKFIFPSLTFLRLRDLPDLTTFYSGMHILECPELRKLEVNHVDVFANLEELTLSKCIFTTWRQAQFHKLKILHFISDGSDFFQVGLLQNIHNLEKLVLSTCEYKKIFSCEEVEEHAEGIAQIkslklkklwlIEEHLWNPDSKLDSFLQNLEFLEVKKCALSLISLVPSSASFRNLTVLKVCNCWQLISLVTPQTAKTLVQLRELRVSECNRLEEIVANDGDADDEIVFSKLKWLFLESSESITSFCSGNYAFSFPSLEDLIVENCPKLNTFSAGVLKTPRLQAVQNWELGEDFWAGDVNTTLQHLKEKV
Disordered region (IsUnstruct)
*******************QLRELHVFHLPKLTKLWNKDPQGKLIFRNLVVVRIFDCQSLKNIFPTSIARSLLRLETLSIKDCGSVEEIVANDGRGNDAATKFIFPSLTFLRLRDLPDLTTFYSGMHILECPELRKLEVNHVDVFANLEELTLSKCIFTTWRQAQFHKLKILHFISDGSDFFQVGLLQNIHNLEKLVLSTCEYKKIFSCEEVEEHAEGIAQIKSLKLKKLWLIEEHLWNPDSKLDSFLQNLEFLEVKKCALSLISLVPSSASFRNLTVLKVCNCWQLISLVTPQTAKTLVQLRELRVSECNRLEEIVANDGDADDEIVFSKLKWLFLESSESITSFCSGNYAFSFPSLEDLIVENCPKLNTFSAGVLKTPRLQAVQNWELGEDFWAGDVNTTL*******
Disordered Region (DISOPRED)
EIFDLQE*************LRELHVFHLPKLTKLWNKDPQGKLIFRNLVVVRIFDCQSLKNIFPTSIARSLLRLETLSIKDCGSVEEIVANDGRGNDAATKFIFPSLTFLRLRDLPDLTTFYSGMHILECPELRKLEVNHVDVFANLEELTLSKCI********FHKLKILHFISDGSDFFQVGLLQNIHNLEKLVLSTCEYKKIFSCEEVEEHAEGIAQIKSLKLKKLWLIEEHLWNPD*****FLQNLEFLEVKKCALSLISLVPSSASFRNLTVLKVCNCWQLISLVTPQTAKTLVQLRELRVSECNRLEEIV*******DEIVFSKLKWLFLESSESITSFCSGNYAFSFPSLEDLIVENCPKLNTFSAGVLKTPRLQAVQNWELGEDFWAGDVNTTLQHLKEKV
Disordered Region (DISEMBL)
****************AATQLRELHVFHLPKLTKLWNKDPQGKLIFRNLVVVRIFDCQSLKNIFPTSIARSLLRLETLSIKDCGSVEEIVANDGRGNDAATKFIFPSLTFLRLRDLPDLTTFYSGMHILECPELRKLEVNHVDVFANLEELTLSKCIFTTWRQAQFHKLKILHFISDGSDFFQVGLLQNIHNLEKLVLSTCEYKKIFSCEEVEEHAEGIAQIKSLKLKKLWLIEEHLWNPDSKLDSFLQNLEFLEVKKCALSLISLVPSSASFRNLTVLKVCNCWQLISLVTPQTAKTLVQLRELRVSECNRLEEIVANDGDADDEIVFSKLKWLFLESSESITSFCSGNYAFSFPSLEDLIVENCPKLNTFSAGVLKTPRLQAVQNWELGEDFWAGDVNTTLQHLKEKV
Disordered Region (DISPRO)
EIFDLQEVNS***HSGAATQLRELHVFHLPKLTKLWNKDPQGKLIFRNLVVVRIFDCQSLKNIFPTSIARSLLRLETLSIKDCGSVEEIVANDGRGNDAATKFIFPSLTFLRLRDLPDLTTFYSGMHILECPELRKLEVNHVDVFANLEELTLSKCIFTTWRQAQFHKLKILHFISDGSDFFQVGLLQNIHNLEKLVLSTCEYKKIFSCEEVEEHAEGIAQIKSLKLKKLWLIEEHLWNPDSKLDSFLQNLEFLEVKKCALSLISLVPSSASFRNLTVLKVCNCWQLISLVTPQTAKTLVQLRELRVSECNRLEEIVANDGDADDEIVFSKLKWLFLESSESITSFCSGNYAFSFPSLEDLIVENCPKLNTFSAGVLKTPRLQAVQNWELGEDFWAGDVNTTLQHLKEK*
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
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TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
EIFDLQEVNSEETHSGAATQLRELHVFHLPKLTKLWNKDPQGKLIFRNLVVVRIFDCQSLKNIFPTSIARSLLRLETLSIKDCGSVEEIVANDGRGNDAATKFIFPSLTFLRLRDLPDLTTFYSGMHILECPELRKLEVNHVDVFANLEELTLSKCIFTTWRQAQFHKLKILHFISDGSDFFQVGLLQNIHNLEKLVLSTCEYKKIFSCEEVEEHAEGIAQIKSLKLKKLWLIEEHLWNPDSKLDSFLQNLEFLEVKKCALSLISLVPSSASFRNLTVLKVCNCWQLISLVTPQTAKTLVQLRELRVSECNRLEEIVANDGDADDEIVFSKLKWLFLESSESITSFCSGNYAFSFPSLEDLIVENCPKLNTFSAGVLKTPRLQAVQNWELGEDFWAGDVNTTLQHLKEKV
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	410	2.2.26 [Sep-21-2011]
Q42484	909	Disease resistance protei	yes	no	0.287	0.129	0.291	5e-06
Q9SI85	893	Probable disease resistan	no	no	0.221	0.101	0.320	0.0005

>sp|Q42484|RPS2_ARATH Disease resistance protein RPS2 OS=Arabidopsis thaliana GN=RPS2 PE=1 SV=1

 Score = 52.8 bits (125), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 39/134 (29%), Positives = 61/134 (45%), Gaps = 16/134 (11%)

Query: 24  LHVFHLPKLTKLWNKDPQGKLIFRNLVVVRIFDCQSLKNIFPTSIARSLLRLETLSIKDC 83
           LH  H   LT++W  +   +   RN+  + I  C  LKN+   S  + L +LE + + DC
Sbjct: 752 LHSLH--NLTRVWG-NSVSQDCLRNIRCINISHCNKLKNV---SWVQKLPKLEVIELFDC 805

Query: 84  GSVEEIVANDGRGNDAATKFIFPSLTFLRLRDLPDLTTFYSG---------MHILECPEL 134
             +EE+++ +          +FPSL  LR RDLP+L +             + I  CP +
Sbjct: 806 REIEELIS-EHESPSVEDPTLFPSLKTLRTRDLPELNSILPSRFSFQKVETLVITNCPRV 864

Query: 135 RKLEVNHVDVFANL 148
           +KL         NL
Sbjct: 865 KKLPFQERRTQMNL 878

Disease resistance (R) protein that specifically recognizes the AvrRpt2 type III effector avirulence protein from Pseudomonas syringae. Resistance proteins guard the plant against pathogens that contain an appropriate avirulence protein via an indirect interaction with this avirulence protein. That triggers a defense system including the hypersensitive response, which restricts the pathogen growth. Acts via its interaction with RIN4, and probably triggers the plant resistance when RIN4 is degraded by AvrRpt2.
Arabidopsis thaliana (taxid: 3702)

>sp|Q9SI85|DRL14_ARATH Probable disease resistance protein At1g62630 OS=Arabidopsis thaliana GN=At1g62630 PE=3 SV=2

 Score = 45.8 bits (107), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 34/106 (32%), Positives = 52/106 (49%), Gaps = 15/106 (14%)

Query: 46  FRNLVVVRIFDCQSLKNIFPTSIARSLLRLETLSIKDCGSVEEIVANDG--RGNDAATKF 103
           F +LV V I++C+ L+ +     A    +L +LS+ D   +E+I+  +    G D+    
Sbjct: 740 FLSLVDVTIYNCEGLRELTFLIFAP---KLRSLSVVDAKDLEDIINEEKACEGEDSGI-V 795

Query: 104 IFPSLTFLRLRDLPDLTTFY---------SGMHILECPELRKLEVN 140
            FP L +L L DLP L   Y           + I ECP LRKL ++
Sbjct: 796 PFPELKYLNLDDLPKLKNIYRRPLPFLCLEKITIGECPNLRKLPLD 841

Probable disease resistance protein.

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	410
224110992	2359	cc-nbs-lrr resistance protein [Populus t	0.982	0.170	0.385	1e-70
255542484	2460	phosphoprotein phosphatase, putative [Ri	0.978	0.163	0.394	6e-68
147865073	1694	hypothetical protein VITISV_021876 [Viti	0.975	0.236	0.396	2e-66
302143647	759	unnamed protein product [Vitis vinifera]	0.973	0.525	0.404	4e-66
147802546	1409	hypothetical protein VITISV_007222 [Viti	0.960	0.279	0.400	1e-63
147787802	1517	hypothetical protein VITISV_005047 [Viti	0.919	0.248	0.378	3e-63
357439637	545	Cc-nbs-lrr resistance protein [Medicago	0.978	0.735	0.334	2e-55
356522570	2300	PREDICTED: uncharacterized protein LOC10	0.956	0.170	0.340	1e-54
358344279	1053	Rpp4 candidate [Medicago truncatula] gi|	0.970	0.377	0.356	2e-53
357439633	1039	Rpp4 candidate [Medicago truncatula] gi|	0.975	0.384	0.332	2e-53

>gi|224110992|ref|XP_002332999.1| cc-nbs-lrr resistance protein [Populus trichocarpa] gi|222834484|gb|EEE72961.1| cc-nbs-lrr resistance protein [Populus trichocarpa]

 Score =  273 bits (698), Expect = 1e-70,   Method: Compositional matrix adjust.
 Identities = 181/470 (38%), Positives = 254/470 (54%), Gaps = 67/470 (14%)

Query: 2    IFDLQEVNSEETHSGAATQLRELHVFHLPKLTKLWNKDPQGKLIFRNLVVVRIFDCQSLK 61
            IFDL+  + +E    +  QLR+L +  LPKL  +WNKDPQGK  F NL +VR F C  LK
Sbjct: 1192 IFDLKGPSVDEIQPSSVVQLRDLSLNSLPKLKHIWNKDPQGKHKFHNLQIVRAFSCGVLK 1251

Query: 62   NIFPTSIARSLLRLETLSIKDCGSVEEIVANDGRGNDAATKFIFPSLTFLRLRDLPDLTT 121
            N+FP SIAR L +LE L I  CG VE+IVA +  G +A   F+FP LT L L ++     
Sbjct: 1252 NLFPFSIARVLRQLEKLEIVHCG-VEQIVAKE-EGGEAFPYFMFPRLTSLDLIEIRKFRN 1309

Query: 122  FYSGMHILECPELRKLEVNHV----------------------------------DVFAN 147
            FY G H  ECP L+ L V+                                    ++ +N
Sbjct: 1310 FYPGKHTWECPRLKSLAVSGCGNIKYFDSKFLYLQEVQGEIDPTVPIQQPLFSDEEIISN 1369

Query: 148  LEELTLSK----------CIFTTWRQAQFHKLKILHFISDGSDFFQVGLLQNIHNLEKLV 197
            LEEL+L+           C F     ++   +K+ +F     D    G LQ+I NLE L 
Sbjct: 1370 LEELSLNGEDPATSIIWCCQFPGKFYSRLKVIKLKNFYGK-LDPIPFGFLQSIRNLETLS 1428

Query: 198  LSTCEYKKIF---SCEEVEEHAEGI----------AQIKSLKLKKLWLIEEHLWNPDSKL 244
            +S   ++KIF    C + +E   G           A++K+L +  +  I  H+W P  +L
Sbjct: 1429 VSCSSFEKIFLNEGCVDKDEDIRGPVDSDEYTRMRARLKNLVIDSVQDIT-HIWEPKYRL 1487

Query: 245  DSFLQNLEFLEVKKCALSLISLVPSSASFRNLTVLKVCNCWQLISLVTPQTAKTLVQLRE 304
             S +QNLE L+++ C  SL++L PS+  F NL  L V +C  L +L+T  TAK+L QL +
Sbjct: 1488 ISVVQNLESLKMQSCN-SLVNLAPSTVLFHNLETLDVHSCHGLSNLLTSSTAKSLGQLVK 1546

Query: 305  LRVSECNRLEEIVANDG-DADDEIVFSKLKWLFLESSESITSFCSGNYAFSFPSLEDLIV 363
            L V  C  + EIVA  G + +D+I+FSKL++L L   E++TSFC GNY F FPSL+ ++V
Sbjct: 1547 LIVVNCKLVTEIVAKQGGEINDDIIFSKLEYLELVRLENLTSFCPGNYNFIFPSLKGMVV 1606

Query: 364  ENCPKLNTFSAGVLKTPRLQAVQNWE---LGEDFWAGDVNTTLQHLKEKV 410
            E CPK+  FS G+  TP+LQ V  W+   + E  W G++N TLQ L  K+
Sbjct: 1607 EQCPKMRIFSQGISSTPKLQGVY-WKKDSMNEKCWHGNLNATLQQLYTKM 1655

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255542484|ref|XP_002512305.1| phosphoprotein phosphatase, putative [Ricinus communis] gi|223548266|gb|EEF49757.1| phosphoprotein phosphatase, putative [Ricinus communis]

 Score =  264 bits (675), Expect = 6e-68,   Method: Compositional matrix adjust.
 Identities = 177/449 (39%), Positives = 245/449 (54%), Gaps = 48/449 (10%)

Query: 1    EIFDLQE-VNSEETHSGAATQLRELHVFHLPKLTKLWNKDPQGKLIFRNLVVVRIFDCQS 59
            E+FDL+E +  EE     A+QL  L + +LP L  +WN+DP+G + F  L  V +++C  
Sbjct: 2002 EVFDLRELIKVEEQLVTEASQLETLEIHNLPNLKHVWNEDPKGIISFEKLSSVEVWECPC 2061

Query: 60   LKNIFPTSIARSLLRLETLSIKDCGSVEEIVAN-DGRGNDAATKFIFPSLTFLRLRDLPD 118
            LK+IFPTS+A+ L +LE L++  CG VEEIV+  DG G +  + F+FP L FL L  L +
Sbjct: 2062 LKSIFPTSVAKHLPQLEALNVDGCG-VEEIVSKEDGVGVEETSMFVFPRLKFLDLWRLQE 2120

Query: 119  LTTFYSGMHILECPELRKLEVNHVD---------------------------------VF 145
            L +FY G+H LECP L +L V   D                                 V 
Sbjct: 2121 LKSFYPGIHTLECPVLEQLIVYRCDKLETFSYEQGSQETHTEGQQEIQAEQPLFCFTKVV 2180

Query: 146  ANLEELTLSKCIFTTWRQAQF-----HKLKILHF--ISDGSDFFQVGLLQNIHNLEKLVL 198
             NL  L+LS       R+ QF     +KL  LH     D S      LL    N+ +L+L
Sbjct: 2181 PNLCNLSLSCDDIKAIREGQFSAETFNKLNTLHLYCFHDTSFDSPCDLLHKFQNVHQLIL 2240

Query: 199  STCEYKKIFSCEEVEEHAEGIAQIKSLKLKKLWLIEEHLWNPDSKLDSFLQNLEFLEVKK 258
                +K +FS   V+E A  ++Q++ LKL  L  ++E +W+ D   D  LQNLE LE+  
Sbjct: 2241 RCSNFKVLFSFGVVDESARILSQLRYLKLDYLPDMKE-IWSQDCPTDQTLQNLETLEIWG 2299

Query: 259  CALSLISLVPSSASFRNLTVLKVCNCWQLISLVTPQTAKTLVQLRELRVSECNRLEEIVA 318
            C  SLISL   SA F+NL  L V NC +L+ LVT   AK+LV L ++ V ECN L E+VA
Sbjct: 2300 CH-SLISLASGSAGFQNLETLDVYNCDELLYLVTSSVAKSLVHLTKMTVRECNILREVVA 2358

Query: 319  NDGD-ADDEIVFSKLKWLFLESSESITSFCSGNYAFSFPSLEDLIVENCPKLNTFSAGVL 377
            ++ D    +I+FSKL+ L L   ES+  FCS +    FPSL+D+ V  CP +  FS GV+
Sbjct: 2359 SEADEPQGDIIFSKLENLRLYRLESLIRFCSASITIQFPSLKDVEVTQCPNMMDFSRGVI 2418

Query: 378  KTPRLQAVQNWELGEDFWAGDVNTTLQHL 406
            + P+LQ V     GE+ W   +NTT+Q L
Sbjct: 2419 RAPKLQKV--CFAGEERWVEHLNTTIQQL 2445

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147865073|emb|CAN83232.1| hypothetical protein VITISV_021876 [Vitis vinifera]

 Score =  259 bits (661), Expect = 2e-66,   Method: Compositional matrix adjust.
 Identities = 181/457 (39%), Positives = 256/457 (56%), Gaps = 57/457 (12%)

Query: 1    EIFDLQEVNSEETHSGAATQLRELHVFHLPKLTKLWNKDPQGKLIFRNLVVVRIFDCQSL 60
            E+FD++  N  E      T L  L +  LPK+ K+WNKDP G L F+NL  + I  CQSL
Sbjct: 1157 EVFDVEGTNVNE--GVTVTHLSRLILRLLPKVEKIWNKDPHGILNFQNLKSIFIDKCQSL 1214

Query: 61   KNIFPTSIARSLLRLETLSIKDCGSVEEIVANDGRGNDAATKFIFPSLTFLRLRDLPDLT 120
            KN+FP S+ + L++LE L ++ CG +EEIVA D     AA KF+FP +T L+L  L  L 
Sbjct: 1215 KNLFPASLVKDLVQLEKLKLRSCG-IEEIVAKDNEAETAA-KFVFPKVTSLKLFHLHQLR 1272

Query: 121  TFYSGMHILECPELRKLEV---NHVDVFAN------------------------------ 147
            +FY G H  + P L++L V   + V+VFA+                              
Sbjct: 1273 SFYPGAHTSQWPLLKELIVRACDKVNVFASETPTFQRRHHEGSFDMPILQPLFLLQQVGF 1332

Query: 148  --LEELTLSKCIFTTWRQAQFH-----KLKILHFISDGSDFFQVG--LLQNIHNLEKLVL 198
              LEEL L     T   Q QF      +L+ L+    G     +   +LQ +HNLEKL +
Sbjct: 1333 PYLEELILDDNGNTEIWQEQFPMDSFPRLRCLNVRGYGDILVVIPSFMLQRLHNLEKLDV 1392

Query: 199  STCE-YKKIFSCEEVEE--HAEGIAQIKSLKLKKLWLIEEHLWNPDSKLDSFLQNLEFLE 255
              C   K+IF  E ++E   A+ + +++ + L  L  +  HLW  +SK    LQ+LE LE
Sbjct: 1393 RRCSSVKEIFQLEGLDEENQAQRLGRLREIILGSLPALT-HLWKENSKSGLDLQSLESLE 1451

Query: 256  VKKCALSLISLVPSSASFRNLTVLKVCNCWQLISLVTPQTAKTLVQLRELRVSECNRLEE 315
            V  C  SLISLVP S SF+NL  L V +C  L SL++P  AK+LV+LR+L++   + +EE
Sbjct: 1452 VWSCN-SLISLVPCSVSFQNLDTLDVWSCSSLRSLISPSVAKSLVKLRKLKIGGSHMMEE 1510

Query: 316  IVANDG-DADDEIVFSKLKWLFLESSESITSFCSGNYAFSFPSLEDLIVENCPKLNTFSA 374
            +VAN+G +  DEI F KL+ + L    ++TSF SG Y FSFPSLE ++VE CPK+  FS 
Sbjct: 1511 VVANEGGEVVDEIAFYKLQHMVLLCLPNLTSFNSGGYIFSFPSLEHMVVEECPKMKIFSP 1570

Query: 375  GVLKTPRLQAVQNWELGED--FWAGDVNTTLQHLKEK 409
              + TP+L+ V   E+ +D   W  D+NTT+ +L +K
Sbjct: 1571 SFVTTPKLERV---EVADDEWHWHNDLNTTIHYLFKK 1604

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|302143647|emb|CBI22400.3| unnamed protein product [Vitis vinifera]

 Score =  258 bits (659), Expect = 4e-66,   Method: Compositional matrix adjust.
 Identities = 187/462 (40%), Positives = 261/462 (56%), Gaps = 63/462 (13%)

Query: 1   EIFDLQ--EVNSEETHSGAATQLRELHVFHLPKLTKLWNKDPQGKLIFRNLVVVRIFDCQ 58
           E+FD++   VN         TQL +L +  LPK+ K+WNKDP G L F+NL  + I  CQ
Sbjct: 290 EVFDVEGTNVNVNVKEGVTVTQLSQLILRLLPKVEKIWNKDPHGILNFQNLKSIFIDKCQ 349

Query: 59  SLKNIFPTSIARSLLRLETLSIKDCGSVEEIVANDGRGNDAATKFIFPSLTFLRLRDLPD 118
           SLKN+FP S+ + L++LE L ++ CG +EEIVA D     AA KF+FP +T L L +L  
Sbjct: 350 SLKNLFPASLVKDLVQLEKLELRSCG-IEEIVAKDNEAETAA-KFVFPKVTSLILVNLHQ 407

Query: 119 LTTFYSGMHILECPELRKLEV---NHVDVFAN---------------------------- 147
           L +FY G H  + P L++L V   + V+VFA+                            
Sbjct: 408 LRSFYPGAHTSQWPLLKELIVRACDKVNVFASETPTFQRRHHEGSFDMPSLQPLFLLQQV 467

Query: 148 ----LEELTLSKCIFTTWRQAQF--------HKLKILHFISDGSDFFQVGLLQNIHNLEK 195
               LEEL L+    T   Q QF          LK+  +I D        +LQ  HNLEK
Sbjct: 468 ALPYLEELILNDNGNTEIWQEQFPMDSFPRLRYLKVYGYI-DILVVIPSFMLQRSHNLEK 526

Query: 196 LVLSTCE-YKKIFSCEEVEEHAEGIAQIKSLKLKKLWLIE----EHLWNPDSKLDSFLQN 250
           L +  C   K+IF  E ++E  E  AQ +  +L+++WL +     HLW  +SK    LQ+
Sbjct: 527 LNVRRCSSVKEIFQLEGLDE--ENQAQ-RLGRLREIWLRDLPALTHLWKENSKSILDLQS 583

Query: 251 LEFLEVKKCALSLISLVPSSASFRNLTVLKVCNCWQLISLVTPQTAKTLVQLRELRVSEC 310
           LE LEV  C  SLISLVP S SF+NL  L V +C  L SL++P  AK+LV+LR+L++   
Sbjct: 584 LESLEVWNCD-SLISLVPCSVSFQNLDTLDVWSCSNLRSLISPSVAKSLVKLRKLKIGGL 642

Query: 311 NRLEEIVANDG-DADDEIVFSKLKWLFLESSESITSFCSGNYAFSFPSLEDLIVENCPKL 369
           + +EE+VAN+G +A DEI F KL+ + L    ++TSF SG Y FSFPSLE ++VE CPK+
Sbjct: 643 HMMEEVVANEGGEAVDEIAFYKLQHMVLLCLPNLTSFNSGGYIFSFPSLEHMVVEECPKM 702

Query: 370 NTFSAGVLKTPRLQAVQNWELGED--FWAGDVNTTLQHLKEK 409
             FS  ++ TP+L+ V   E+ +D   W  D+NTT+ +L +K
Sbjct: 703 KIFSPSLVTTPKLERV---EVADDEWHWHNDLNTTIHNLFKK 741

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147802546|emb|CAN77665.1| hypothetical protein VITISV_007222 [Vitis vinifera]

 Score =  249 bits (637), Expect = 1e-63,   Method: Compositional matrix adjust.
 Identities = 183/457 (40%), Positives = 261/457 (57%), Gaps = 63/457 (13%)

Query: 1    EIFDLQEVNSEETHSGAATQLRELHVFHLPKLTKLWNKDPQGKLIFRNLVVVRIFDCQSL 60
            E+FD++ +N +E  + A TQL +L +  LPK+ ++WNK+P G L F+NL  V I  CQSL
Sbjct: 944  EVFDMEGINVKE--AVAVTQLSKLILQFLPKVKQIWNKEPHGILTFQNLKSVMIDQCQSL 1001

Query: 61   KNIFPTSIARSLLRLETLSIKDCGSVEEIVANDGRGNDAATKFIFPSLTFLRLRDLPDLT 120
            KN+FP S+ R L++L+ L +  CG +E IVA D  G   A KF+FP +T LRL  L  L 
Sbjct: 1002 KNLFPASLVRDLVQLQELQVWSCG-IEVIVAKDN-GVKTAAKFVFPKVTSLRLSYLRQLR 1059

Query: 121  TFYSGMHILECPELRKLEVNH---VDVFA------------------------------- 146
            +F+ G H  + P L++L+V+    VD+FA                               
Sbjct: 1060 SFFPGAHTSQWPLLKELKVHECPEVDLFAFETPTFQQIHHMGNLDMLIHQPLFLVQQVAF 1119

Query: 147  -NLEELTLSKCIFTTWRQAQFH-----KLKILHFISDGSDFFQVG--LLQNIHNLEKLVL 198
             NLEELTL     T   Q QF      +L++L+    G     +   +LQ +HNLEKL +
Sbjct: 1120 PNLEELTLDYNNATEIWQEQFPVNSFCRLRVLNVCEYGDILVVIPSFMLQRLHNLEKLNV 1179

Query: 199  STCE-YKKIFSCEEVEEHAEGIAQIKSL-KLKKLWLIEE----HLWNPDSKLDSFLQNLE 252
              C   K+IF  E  +E      Q K L +L+++WL +     HLW  +SK    LQ+LE
Sbjct: 1180 KRCSSVKEIFQLEGHDEEN----QAKMLGRLREIWLRDLPGLIHLWKENSKPGLDLQSLE 1235

Query: 253  FLEVKKCALSLISLVPSSASFRNLTVLKVCNCWQLISLVTPQTAKTLVQLRELRVSECNR 312
             LEV  C  SLI+L P S SF+NL  L V +C  L SL++P  AK+LV+L++L++   + 
Sbjct: 1236 SLEVWNCD-SLINLAPCSVSFQNLDSLDVWSCGSLRSLISPLVAKSLVKLKKLKIGGSHM 1294

Query: 313  LEEIVANDG-DADDEIVFSKLKWLFLESSESITSFCSGNYAFSFPSLEDLIVENCPKLNT 371
            +E +V N+G +  DEIVF KL+ + L    ++TSF SG Y FSFPSLE ++VE CPK+  
Sbjct: 1295 MEVVVENEGGEGADEIVFCKLQHIVLLCFPNLTSFSSGGYIFSFPSLEHMVVEECPKMKI 1354

Query: 372  FSAGVLKTPRLQAVQNWELGED--FWAGDVNTTLQHL 406
            FS+G + TPRL+ V   E+ +D   W  D+NTT+ +L
Sbjct: 1355 FSSGPITTPRLERV---EVADDEWHWQDDLNTTIHNL 1388

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147787802|emb|CAN71755.1| hypothetical protein VITISV_005047 [Vitis vinifera]

 Score =  248 bits (634), Expect = 3e-63,   Method: Compositional matrix adjust.
 Identities = 168/444 (37%), Positives = 249/444 (56%), Gaps = 67/444 (15%)

Query: 1    EIFDLQEVNSEETHSGAATQLRELHVFHLPKLTKLWNKDPQGKLIFRNLVVVRIFDCQSL 60
            E+FD++  N         TQL +L +  LPK+ K+WN+DP G L F+NL  + I +CQSL
Sbjct: 1009 EVFDVEGTNVNVKEGVTVTQLSQLILRSLPKVEKIWNEDPHGILNFQNLQSITIDECQSL 1068

Query: 61   KNIFPTSIARSLLRLETLSIKDCGSVEEIVANDGRGNDAATKFIFPSLTFLRLRDLPDLT 120
            KN+FP S+ R L++L+ L +  CG +EEIVA D  G D    F+FP +T L L  L  L 
Sbjct: 1069 KNLFPASLVRDLVQLQELHVLCCG-IEEIVAKDN-GVDTQATFVFPKVTSLELSYLHQLR 1126

Query: 121  TFYSGMHILECPELRKLEVNH---VDVFANLEELTLSKCIFTTWRQAQFHKLKILHFISD 177
            +FY G H    P L++L V     V+VFA  E          T+RQ             +
Sbjct: 1127 SFYPGAHPSWWPSLKQLTVRECYKVNVFA-FEN--------PTFRQRHH----------E 1167

Query: 178  GSDFFQVGLLQNIH--NLEKLVLS-------------------------TCEYKKIFSCE 210
            G+    + LLQ +   NLE+L L                            ++K++F  E
Sbjct: 1168 GNLDMPLSLLQPVEFPNLEELTLDHNKDTEIWPEQFPVDSFPRLRVLDDVIQFKEVFQLE 1227

Query: 211  EVEEHAEGIAQIKSL-KLKKLWLIE----EHLWNPDSKLDSFLQNLEFLEVKKCALSLIS 265
             ++       Q K L +L+++WL +     HLW  +SK    L +L+ LEV+ C + LI+
Sbjct: 1228 GLDNEN----QAKRLGRLREIWLCDLPELTHLWKENSKPGLDLLSLKSLEVRNC-VRLIN 1282

Query: 266  LVPSSASFRNLTVLKVCNCWQLISLVTPQTAKTLVQLRELRVSECNRLEEIVAND-GDAD 324
            LVPSSASF+NL  L V +C  L SL++P  AK+LV+L+ L++   + +EE+VAN+ G+A 
Sbjct: 1283 LVPSSASFQNLATLDVQSCGSLRSLISPSVAKSLVKLKTLKIGGSHMMEEVVANEEGEAA 1342

Query: 325  DEIVFSKLKWLFLESSESITSFCSGNYAFSFPSLEDLIVENCPKLNTFSAGVLKTPRLQA 384
            DEI F KL+ + L+   ++TSF SG Y FSFPSLE ++++ CPK+  FS G++ TPRL+ 
Sbjct: 1343 DEIAFCKLQHMALKCLSNLTSFSSGGYIFSFPSLEHMVLKKCPKMKIFSPGLVTTPRLER 1402

Query: 385  VQNWELGED--FWAGDVNTTLQHL 406
            ++   +G+D   W  D+NTT+ +L
Sbjct: 1403 IK---VGDDEWHWQDDLNTTIHNL 1423

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357439637|ref|XP_003590096.1| Cc-nbs-lrr resistance protein [Medicago truncatula] gi|355479144|gb|AES60347.1| Cc-nbs-lrr resistance protein [Medicago truncatula]

 Score =  222 bits (566), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 151/452 (33%), Positives = 241/452 (53%), Gaps = 51/452 (11%)

Query: 2   IFDLQEVNSEETHSGAATQLRELHVFHLPKLTKLWNKDPQGKLIFRNLVVVRIFDCQSLK 61
           +FDL++  ++E     ++QL++L + ++PKL  +W +DP   + F+NL  V + +C SL 
Sbjct: 79  VFDLKDEFAKEIVVKNSSQLKKLKLSNVPKLKHVWKEDPHDTMRFQNLSEVSVEECTSLI 138

Query: 62  NIFPTSIARSLLRLETLSIKDCGSVEEIVANDGRGNDAATKFIFPSLTFLRLRDLPDLTT 121
           +IFP ++AR +++L++L + +CG +EEIVA +  G +    F+F  LTF+RL  LP L  
Sbjct: 139 SIFPLTVARDMMQLQSLRVSNCG-IEEIVAKE-EGTNEIVNFVFSHLTFIRLELLPKLKA 196

Query: 122 FYSGMHILECP-------------ELRKLEVNHVD--------------------VFANL 148
           F+ G+H L+C              EL K E+ H +                    V  N+
Sbjct: 197 FFVGVHSLQCKSLKTIYLFGCPKIELFKTELRHQESSRSDVLNISTYQPLFVIEEVLTNV 256

Query: 149 EELTLSK----CIFTTWRQAQFHKLK---ILHFISDGSDFFQVGLLQNIHNLEKLVLSTC 201
           E L L+      + + +   QF+ +K   +  F ++  D F    L+N+ +LE L++   
Sbjct: 257 ERLALNNKDLGILQSQYSGVQFNNVKHIDVCQFYTE-EDAFPYWFLKNVPSLESLLVQWS 315

Query: 202 EYKKIFSCEEVEEHAEGIAQIKSLKLKKLWLIE--EHLWNPDSKLDSFLQNLEFLEVKKC 259
            + +IF  E++    +       LKL KLW +   +++     K+D  L  +E + V +C
Sbjct: 316 IFTEIFQGEQLISTEKETQISPRLKLLKLWQLHKLQYICKEGFKMDPILHFIEIIIVHQC 375

Query: 260 ALSLISLVPSSASFRNLTVLKVCNCWQLISLVTPQTAKTLVQLRELRVSECNRLEEIVAN 319
           + SLI LVPSS +F  LT L+V NC  LI+L+T  TAK+LV+L  +++  CN LE+IV  
Sbjct: 376 S-SLIKLVPSSVTFTYLTYLEVANCNGLINLITYSTAKSLVKLTTMKIKMCNLLEDIVNG 434

Query: 320 DGDADDEIVFSKLKWLFLESSESITSFCSGNYAFSFPSLEDLIVENCPKLNTFSAGVLKT 379
             D  DEI F  L++L L S   +   CS      FP LE ++V+ C ++  FS+GV  T
Sbjct: 435 KEDETDEIEFQSLQFLELNSLPRLHQLCSCPCPIKFPLLEVVVVKECARMELFSSGVTNT 494

Query: 380 PRLQAVQNWELGED-----FWAGDVNTTLQHL 406
           P LQ VQ  E  E+      W GD+N ++  L
Sbjct: 495 PNLQIVQIEESNEENDEQNHWEGDLNRSVNKL 526

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356522570|ref|XP_003529919.1| PREDICTED: uncharacterized protein LOC100813151 [Glycine max]

 Score =  220 bits (561), Expect = 1e-54,   Method: Compositional matrix adjust.
 Identities = 150/441 (34%), Positives = 233/441 (52%), Gaps = 49/441 (11%)

Query: 2    IFDLQEVNSEETHSGAATQLRELHVFHLPKLTKLWNKDPQGKLIFRNLVVVRIFDCQSLK 61
            IF++++    +   G  T L+ + V +LPKL ++W++DP G L F+ L  + +F C  L+
Sbjct: 1121 IFEIKDSQQVDASGGIDTNLQVVDVSYLPKLEQVWSRDPGGILNFKKLQSIHVFSCHRLR 1180

Query: 62   NIFPTSIARSLLRLETLSIKDCGSVEEIVANDGRGNDAATKFIFPSLTFLRLRDLPDLTT 121
            N+FP S+A+ + +LE +S+  C  + EIVA +        + +FP LT ++L +L  +  
Sbjct: 1181 NVFPASVAKDVPKLEYMSVSVCHGIVEIVACEDGSETNTEQLVFPELTDMKLCNLSSIQH 1240

Query: 122  FYSGMHILECPELRKLEVNHVD------------------------VFANLEELTL---- 153
            FY G H +ECP+L+KLEV   +                        +F NLE L +    
Sbjct: 1241 FYRGRHPIECPKLKKLEVRECNKKLKTFGTGERSNEEDEAVMSAEKIFPNLEFLVIDFDE 1300

Query: 154  -SKCIFTTWRQAQFHKLKILHF--ISDGSDFFQVGLLQNIHNLEKLVLSTCEYKKIFSCE 210
              K + +   +   H+LK L    ++DG    Q+  L  + NLEKL LS+ ++      +
Sbjct: 1301 AQKWLLSNTVKHPMHRLKELRLSKVNDGERLCQI--LYRMPNLEKLYLSSAKH----LLK 1354

Query: 211  EVEEHAEGIAQIKSLKLKKLWLIEEHLWNPDSKLDSFLQNLEFLEVKKCALSLISLVPSS 270
            E  E   GI     L+LK+L L    + +   + +  LQ LE L + +C   LI L P S
Sbjct: 1355 ESSESRLGIV----LQLKELGLYWSEIKDIGFEREPVLQRLELLSLYQCH-KLIYLAPPS 1409

Query: 271  ASFRNLTVLKVCNCWQLISLVTPQTAKTLVQLRELRVSECNRLEEIVANDGDADDE-IVF 329
             S   LT L+V  C+ L +L+   TAK+LVQL+ +++  CN LEEIV+++G+ ++E IVF
Sbjct: 1410 VSLAYLTNLEVWYCYGLRNLMASSTAKSLVQLKSMKIRGCNELEEIVSDEGNEEEEQIVF 1469

Query: 330  SKLKWLFLESSESITSFCSGNYA-FSFPSLEDLIVENCPKLNTFSAGVLKTPRLQAV--Q 386
             KL  + LE  + +  FCS     F FPSLE LIV  CP +  F+ G  + P+LQ +   
Sbjct: 1470 GKLITIELEGLKKLKRFCSYKKCEFKFPSLEVLIVRECPWMERFTEGGARAPKLQNIVSA 1529

Query: 387  NWELGEDF---WAGDVNTTLQ 404
            N E  E+    W  D+N T+Q
Sbjct: 1530 NEEGKEEAKWQWEADLNATIQ 1550

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|358344279|ref|XP_003636218.1| Rpp4 candidate [Medicago truncatula] gi|355502153|gb|AES83356.1| Rpp4 candidate [Medicago truncatula]

 Score =  216 bits (549), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 161/451 (35%), Positives = 227/451 (50%), Gaps = 53/451 (11%)

Query: 2    IFDLQEVNSEETHSGAATQLRELHVFHLPKLTKLWNKDPQGKLIFRNLVVVRIFDCQSLK 61
            +FD++ + S+E      TQL+ L +  LPKL  +WN+DP   + F NL  V +  CQSL 
Sbjct: 600  VFDVKGMKSQEILIKENTQLKRLTLSTLPKLKHIWNEDPHEIISFGNLHKVDVSMCQSLL 659

Query: 62   NIFPTSIARSLLRLETLSIKDCGSVEEIVANDGRGNDAATKFIFPSLTFLRLRDLPDLTT 121
             +FP S++  L  LE L I  CG V+EIVA +        +F FP L  + LR L +L +
Sbjct: 660  YVFPYSLSPDLGHLEMLEISSCG-VKEIVAME-ETVSMEIQFNFPQLKIMALRLLSNLKS 717

Query: 122  FYSGMHILECPELRKLEVNHVDVF-----------------------------------A 146
            FY G H L+CP L+ L V   +                                      
Sbjct: 718  FYQGKHTLDCPSLKTLNVYRCEALRMFSFSNPDSQQSYSVDENQDMLFQQPLFCIEKLGP 777

Query: 147  NLEELTLS-KCIFTTWRQAQ-FHKLKILH---FISDGSDFFQVGLLQNIHNLEKLVLSTC 201
            NLEE+ ++ + +     Q   FHK++ +    F      F    L +   NLE   +   
Sbjct: 778  NLEEMAINGRDVLGILNQENIFHKVEYVRLQLFDETPITFLNEHLHKIFPNLETFQVRNS 837

Query: 202  EYKKIFSCEEVEEHAEGIAQIKSLKLKKLWLIE----EHLWNPDSKLD-SFLQNLEFLEV 256
             +  +F  +   +H     QI S +++KLWL E    EH+W  +  LD   LQ+LE   V
Sbjct: 838  SFVVLFPTKGTTDHLS--MQI-SKQIRKLWLFELEKLEHIWQENFPLDHPLLQHLECFSV 894

Query: 257  KKCALSLISLVPSSASFRNLTVLKVCNCWQLISLVTPQTAKTLVQLRELRVSECNRLEEI 316
              C  SL SLVPSS SF NLT LKV NC +LI L+T  TAK+LVQL+ L++  C +L ++
Sbjct: 895  WSCP-SLKSLVPSSISFTNLTHLKVDNCKELIYLITYSTAKSLVQLKTLKIMNCEKLLDV 953

Query: 317  VAND-GDADDEIVFSKLKWLFLESSESITSFCSGNYAFSFPSLEDLIVENCPKLNTFSAG 375
            V  D G A++ IVF  L++L L S  S+ SFC G  AF FPSL   IV+ CP++  FS+ 
Sbjct: 954  VKIDEGKAEENIVFENLEYLELTSLSSLRSFCYGKQAFIFPSLLHFIVKECPQMKIFSSA 1013

Query: 376  VLKTPRLQAVQNWELGEDFWAGDVNTTLQHL 406
                P L  ++  E     W GD+N T+Q +
Sbjct: 1014 PTAAPCLTTIEVEEENMR-WKGDLNKTIQQI 1043

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357439633|ref|XP_003590094.1| Rpp4 candidate [Medicago truncatula] gi|355479142|gb|AES60345.1| Rpp4 candidate [Medicago truncatula]

 Score =  216 bits (549), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 143/430 (33%), Positives = 244/430 (56%), Gaps = 30/430 (6%)

Query: 2   IFDLQEVNSEETHSGAATQLRELHVFHLPKLTKLWNKDPQGKLIFRNLVVVRIFDCQSLK 61
           +FDL++  ++E     ++QL++L + ++PKL  +W +DP   + F+NL  V + +C SL 
Sbjct: 90  VFDLKDEFAKEIVVKNSSQLKKLKLSNVPKLKHVWKEDPHDTMRFQNLSEVSVEECTSLI 149

Query: 62  NIFPTSIARSLLRLETLSIKDCGSVEEIVANDGRGNDAATKFIFPSLTFLRLRDLPDLTT 121
           +IFP ++AR +++L++L + +CG +EEIVA +  G +    F+F  LTF+RL  LP L  
Sbjct: 150 SIFPLTVARDMMQLQSLRVSNCG-IEEIVAKE-EGTNEIVNFVFSHLTFIRLELLPKLKA 207

Query: 122 FYSGMHILECPELR-------------KLEVNHVDVF-ANLEELTLSKCIF----TTWRQ 163
           F+ G+H L+C  L+             K E+ H +   +++  ++  + +F    + +  
Sbjct: 208 FFVGVHSLQCKSLKTIYLFGCPKIELFKTELRHQESSRSDVLNISTYQPLFVIEESQYSG 267

Query: 164 AQFHKLK---ILHFISDGSDFFQVGLLQNIHNLEKLVLSTCEYKKIFSCEEV---EEHAE 217
            QF+ +K   +  F ++ + F     L+N+ +LE L++    + +IF  E++   E+  +
Sbjct: 268 VQFNNVKHIDVCEFYTEEATF-PYWFLKNVPSLESLLVQWSLFTEIFQGEQLISTEKETQ 326

Query: 218 GIAQIKSLKLKKLWLIEEHLWNPDSKLDSFLQNLEFLEVKKCALSLISLVPSSASFRNLT 277
              ++K L+L +L  ++ ++     K+D  L  +E + V  C+ SLI LVPSS +F  LT
Sbjct: 327 ISPRLKQLELGQLHRLQ-YICKEGFKMDPILHFIESINVNHCS-SLIKLVPSSVTFTYLT 384

Query: 278 VLKVCNCWQLISLVTPQTAKTLVQLRELRVSECNRLEEIVANDGDADDEIVFSKLKWLFL 337
            L+V +C  LI+L+T  TAK+LV+L  +++  CN LE+IV    D   EI F  L+ L L
Sbjct: 385 YLEVTSCNGLINLITYSTAKSLVKLTTMKIKMCNLLEDIVNGKEDETKEIEFCSLQSLEL 444

Query: 338 ESSESITSFCSGNYAFSFPSLEDLIVENCPKLNTFSAGVLKTPRLQAVQNWELGED-FWA 396
            S   +  FCS     +FP LE ++V+ CP++   S GV  TP LQ VQ  E  E+  W 
Sbjct: 445 ISLPRVCRFCSCPCPITFPLLEVVVVKECPRMELLSLGVTNTPNLQIVQIEESNEENHWE 504

Query: 397 GDVNTTLQHL 406
           GD+N +++ L
Sbjct: 505 GDLNRSVKKL 514

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	410
TAIR|locus:2163426	1187	TAO1 "target of AVRB operation	0.626	0.216	0.245	1.4e-05
TAIR|locus:2005517	909	RPS2 "RESISTANT TO P. SYRINGAE	0.260	0.117	0.300	1.7e-05
TAIR|locus:2117149	1201	AT4G19050 [Arabidopsis thalian	0.336	0.114	0.302	0.00022

TAIR|locus:2163426 TAO1 "target of AVRB operation1" [Arabidopsis thaliana (taxid:3702)]

 Score = 137 (53.3 bits), Expect = 1.4e-05, P = 1.4e-05
 Identities = 68/277 (24%), Positives = 121/277 (43%)

Query:    16 GAATQLRELHVFHLPKLTKLWNKDPQGKLIFRNLVVVRIFDCQSLKNIFPTSIARSLLRL 75
             G AT L EL +     L KL      G L   NL  + +  C SL  + P+S   ++  L
Sbjct:   701 GNATNLLELDLIDCSSLVKL--PSSIGNLT--NLKKLFLNRCSSLVKL-PSSFG-NVTSL 754

Query:    76 ETLSIKDCGSVEEIVANDGRGNDAATKFIFPSLTFLRLRDLPDLTTFYSGMHILECPELR 135
             + L++  C S+ EI ++ G   +    +     + ++L       T    +H+L C  L 
Sbjct:   755 KELNLSGCSSLLEIPSSIGNIVNLKKVYADGCSSLVQLPSSIGNNTNLKELHLLNCSSLM 814

Query:   136 KLEVNHVDVFANLEELTLSKCIFTTWRQAQFHKLKILH-FISDGSDFFQVGL-LQNIHNL 193
             +   + +++   LE+L LS C+      +  + + +   ++SD S   ++   ++N  NL
Sbjct:   815 ECPSSMLNL-TRLEDLNLSGCLSLVKLPSIGNVINLQSLYLSDCSSLMELPFTIENATNL 873

Query:   194 EKLVLSTCEYKKIFSCEEVEEHAEGIAQIXXXXXXXXXXIEEHLWNPDSKLDSFLQNLEF 253
             + L L  C      +  E+      I  +          ++E    P S +++ + NL+ 
Sbjct:   874 DTLYLDGCS-----NLLELPSSIWNITNLQSLYLNGCSSLKEL---P-SLVENAI-NLQS 923

Query:   254 LEVKKCALSLISLVPSSASFRNLTVLKVCNCWQLISL 290
             L + KC+ SL+ L  S     NL+ L V NC  L+ L
Sbjct:   924 LSLMKCS-SLVELPSSIWRISNLSYLDVSNCSSLLEL 959

GO:0005622 "intracellular" evidence=IEA

GO:0006952 "defense response" evidence=IEA;ISS

GO:0007165 "signal transduction" evidence=IEA

GO:0043531 "ADP binding" evidence=IEA

GO:0042742 "defense response to bacterium" evidence=IMP

TAIR|locus:2005517 RPS2 "RESISTANT TO P. SYRINGAE 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 135 (52.6 bits), Expect = 1.7e-05, P = 1.7e-05
 Identities = 37/123 (30%), Positives = 58/123 (47%)

Query:    24 LHVFHLPKLTKLWNKDPQGKLIFRNLVVVRIFDCQSLKNIFPTSIARSLLRLETLSIKDC 83
             LH  H   LT++W        + RN+  + I  C  LKN+   S  + L +LE + + DC
Sbjct:   752 LHSLH--NLTRVWGNSVSQDCL-RNIRCINISHCNKLKNV---SWVQKLPKLEVIELFDC 805

Query:    84 GSVEEIVANDGRGNDAATKFIFPSLTFLRLRDLPDLTTFYSG---------MHILECPEL 134
               +EE+++ +          +FPSL  LR RDLP+L +             + I  CP +
Sbjct:   806 REIEELIS-EHESPSVEDPTLFPSLKTLRTRDLPELNSILPSRFSFQKVETLVITNCPRV 864

Query:   135 RKL 137
             +KL
Sbjct:   865 KKL 867

GO:0000166 "nucleotide binding" evidence=IEA

GO:0006952 "defense response" evidence=ISS;TAS

GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA

GO:0043531 "ADP binding" evidence=IEA

GO:0009626 "plant-type hypersensitive response" evidence=IMP

GO:0016045 "detection of bacterium" evidence=RCA;IMP

GO:0005515 "protein binding" evidence=IPI

GO:0005886 "plasma membrane" evidence=IDA

GO:0042742 "defense response to bacterium" evidence=RCA;IMP

GO:0000165 "MAPK cascade" evidence=RCA

GO:0006612 "protein targeting to membrane" evidence=RCA

GO:0009595 "detection of biotic stimulus" evidence=RCA

GO:0009617 "response to bacterium" evidence=RCA

GO:0009697 "salicylic acid biosynthetic process" evidence=RCA

GO:0009862 "systemic acquired resistance, salicylic acid mediated signaling pathway" evidence=RCA

GO:0009863 "salicylic acid mediated signaling pathway" evidence=RCA

GO:0009867 "jasmonic acid mediated signaling pathway" evidence=RCA

GO:0009963 "positive regulation of flavonoid biosynthetic process" evidence=RCA

GO:0010200 "response to chitin" evidence=RCA

GO:0010310 "regulation of hydrogen peroxide metabolic process" evidence=RCA

GO:0010363 "regulation of plant-type hypersensitive response" evidence=RCA

GO:0031347 "regulation of defense response" evidence=RCA

GO:0031348 "negative regulation of defense response" evidence=RCA

GO:0043069 "negative regulation of programmed cell death" evidence=RCA

GO:0043900 "regulation of multi-organism process" evidence=RCA

GO:0045087 "innate immune response" evidence=RCA

GO:0050776 "regulation of immune response" evidence=RCA

GO:0050832 "defense response to fungus" evidence=RCA

GO:0051707 "response to other organism" evidence=RCA

TAIR|locus:2117149 AT4G19050 [Arabidopsis thaliana (taxid:3702)]

 Score = 88 (36.0 bits), Expect = 0.00022, Sum P(2) = 0.00022
 Identities = 49/162 (30%), Positives = 70/162 (43%)

Query:   237 LWNPDSKLD---SFLQNLEFLEVKKCALSLISLVPSSASF--RNLTVLKVCNCWQLISLV 291
             L+  D +L+   S   +L+ L +    L L SL  S   F  +NL  L V +C   I  +
Sbjct:  1035 LFESDEQLEKEKSSSPSLQTLWISNLPL-LTSLYSSKGGFIFKNLKKLSV-DCCPSIKWL 1092

Query:   292 TPQTAKTLVQLRELRVSECNRLEEIVANDGDADDEIVFSKLKWLFLESSESITSFCSGNY 351
              P+    L     LRV  C++LE +   +  A +    SKL+ L L     + S    N 
Sbjct:  1093 FPEIPDNL---EILRVKFCDKLERLF--EVKAGE---LSKLRKLHLLDLP-VLSVLGAN- 1142

Query:   352 AFSFPSLEDLIVENCPKLNTFSAGVLKTPRLQAVQNWELGED 393
                FP+LE   +E CPKL          PR+ A    E+ ED
Sbjct:  1143 ---FPNLEKCTIEKCPKLKARE----DEPRIGARITDEISED 1177

GO:0005634 "nucleus" evidence=ISM

GO:0006952 "defense response" evidence=IEA

GO:0043531 "ADP binding" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	410
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	99.91
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	99.91
PLN03210	1153	Resistant to P. syringae 6; Provisional	99.89
PLN03210	1153	Resistant to P. syringae 6; Provisional	99.88
KOG4194	873	consensus Membrane glycoprotein LIG-1 [Signal tran	99.85
KOG4194	873	consensus Membrane glycoprotein LIG-1 [Signal tran	99.83
KOG0444	1255	consensus Cytoskeletal regulator Flightless-I (con	99.75
KOG0444	1255	consensus Cytoskeletal regulator Flightless-I (con	99.7
KOG0618	1081	consensus Serine/threonine phosphatase 2C containi	99.65
KOG0472	565	consensus Leucine-rich repeat protein [Function un	99.57
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	99.51
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	99.49
KOG0472	565	consensus Leucine-rich repeat protein [Function un	99.43
KOG0618	1081	consensus Serine/threonine phosphatase 2C containi	99.41
KOG4341	483	consensus F-box protein containing LRR [General fu	99.39
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	99.23
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	99.19
KOG4341	483	consensus F-box protein containing LRR [General fu	99.18
KOG4658	889	consensus Apoptotic ATPase [Signal transduction me	99.17
KOG4658	889	consensus Apoptotic ATPase [Signal transduction me	99.16
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	99.06
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	99.01
KOG3207	505	consensus Beta-tubulin folding cofactor E [Posttra	98.91
KOG4237	498	consensus Extracellular matrix protein slit, conta	98.88
KOG0617	264	consensus Ras suppressor protein (contains leucine	98.84
KOG2120	419	consensus SCF ubiquitin ligase, Skp2 component [Po	98.73
KOG3207	505	consensus Beta-tubulin folding cofactor E [Posttra	98.73
KOG2120	419	consensus SCF ubiquitin ligase, Skp2 component [Po	98.71
KOG4237	498	consensus Extracellular matrix protein slit, conta	98.68
KOG0617	264	consensus Ras suppressor protein (contains leucine	98.67
KOG1259	490	consensus Nischarin, modulator of integrin alpha5	98.56
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	98.38
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	98.34
PRK15386	426	type III secretion protein GogB; Provisional	98.27
KOG1259	490	consensus Nischarin, modulator of integrin alpha5	98.24
PRK15386	426	type III secretion protein GogB; Provisional	98.2
KOG2982	418	consensus Uncharacterized conserved protein [Funct	98.17
KOG1947	482	consensus Leucine rich repeat proteins, some prote	98.13
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	98.04
KOG1909	382	consensus Ran GTPase-activating protein [RNA proce	97.96
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	97.89
KOG2982	418	consensus Uncharacterized conserved protein [Funct	97.8
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	97.78
KOG1909	382	consensus Ran GTPase-activating protein [RNA proce	97.7
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	97.69
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	97.64
KOG0531	414	consensus Protein phosphatase 1, regulatory subuni	97.63
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	97.6
KOG1947	482	consensus Leucine rich repeat proteins, some prote	97.58
KOG0532	722	consensus Leucine-rich repeat (LRR) protein, conta	97.27
KOG0532	722	consensus Leucine-rich repeat (LRR) protein, conta	97.19
KOG1859	1096	consensus Leucine-rich repeat proteins [General fu	97.13
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	97.1
PLN03150	623	hypothetical protein; Provisional	96.89
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	96.85
KOG0531	414	consensus Protein phosphatase 1, regulatory subuni	96.79
KOG1859	1096	consensus Leucine-rich repeat proteins [General fu	96.74
PLN03150	623	hypothetical protein; Provisional	96.59
KOG3864	221	consensus Uncharacterized conserved protein [Funct	96.37
KOG2123	388	consensus Uncharacterized conserved protein [Funct	96.23
KOG2739	260	consensus Leucine-rich acidic nuclear protein [Cel	95.9
KOG3864	221	consensus Uncharacterized conserved protein [Funct	95.83
KOG1644	233	consensus U2-associated snRNP A' protein [RNA proc	95.8
KOG1644	233	consensus U2-associated snRNP A' protein [RNA proc	95.75
KOG2123	388	consensus Uncharacterized conserved protein [Funct	95.4
KOG2739	260	consensus Leucine-rich acidic nuclear protein [Cel	94.91
KOG4579	177	consensus Leucine-rich repeat (LRR) protein associ	92.51
PF13306	129	LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_	91.55
KOG4579	177	consensus Leucine-rich repeat (LRR) protein associ	90.32
PF13504	17	LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OO	90.31
PF13306	129	LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_	90.14
COG5238	388	RNA1 Ran GTPase-activating protein (RanGAP) involv	87.7
COG5238	388	RNA1 Ran GTPase-activating protein (RanGAP) involv	87.45
PF00560	22	LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le	87.14
smart00367	26	LRR_CC Leucine-rich repeat - CC (cysteine-containi	85.99

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=99.91  E-value=2.2e-23  Score=221.94  Aligned_cols=59  Identities=15%  Similarity=0.098  Sum_probs=29.7

Q ss_pred             ccccceeecCcCcccceecCCCcccCCCCccEEEEecCCCCcccCCCCCCCCCcceeEeccc
Q 036454          329 FSKLKWLFLESSESITSFCSGNYAFSFPSLEDLIVENCPKLNTFSAGVLKTPRLQAVQNWEL  390 (410)
Q Consensus       329 ~~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~L~~l~~~~~  390 (410)
                      +++|+.|++++|.-...++..   ...++|+.|++++|.....+|..+..+++|++|++++|
T Consensus       451 l~~L~~L~L~~n~~~~~~p~~---~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~N  509 (968)
T PLN00113        451 MPSLQMLSLARNKFFGGLPDS---FGSKRLENLDLSRNQFSGAVPRKLGSLSELMQLKLSEN  509 (968)
T ss_pred             CCCCcEEECcCceeeeecCcc---cccccceEEECcCCccCCccChhhhhhhccCEEECcCC
Confidence            445555555554332222211   12355666666665444455555555666777766533

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=99.91  E-value=2e-23  Score=222.16  Aligned_cols=365  Identities=16%  Similarity=0.077  Sum_probs=186.7

Q ss_pred             ccccccCc-cccccccccCCcEEEecCccccccccccCCccccccCcccEEEeccCcCccccCchhHHhhhhccceEeec
Q 036454            3 FDLQEVNS-EETHSGAATQLRELHVFHLPKLTKLWNKDPQGKLIFRNLVVVRIFDCQSLKNIFPTSIARSLLRLETLSIK   81 (410)
Q Consensus         3 ~~~~~~~~-~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~   81 (410)
                      ++++.+.. +..+.+.+++|++|+++++.....+    |..++.+++|++|++++|.....+ |..+ +++++|++|+++
T Consensus       123 L~Ls~n~l~~~~p~~~l~~L~~L~Ls~n~~~~~~----p~~~~~l~~L~~L~L~~n~l~~~~-p~~~-~~l~~L~~L~L~  196 (968)
T PLN00113        123 LNLSNNNFTGSIPRGSIPNLETLDLSNNMLSGEI----PNDIGSFSSLKVLDLGGNVLVGKI-PNSL-TNLTSLEFLTLA  196 (968)
T ss_pred             EECcCCccccccCccccCCCCEEECcCCcccccC----ChHHhcCCCCCEEECccCcccccC-Chhh-hhCcCCCeeecc
Confidence            45555433 3455566788888888776421122    556667777888887777333223 3333 577777777777


Q ss_pred             cccCcceEeccCC---------------CCCCCcccccCCCccEEeeccCCCccccccCcccCCCCCceEEEEccC----
Q 036454           82 DCGSVEEIVANDG---------------RGNDAATKFIFPSLTFLRLRDLPDLTTFYSGMHILECPELRKLEVNHV----  142 (410)
Q Consensus        82 ~~~~l~~~~~~~~---------------~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~~----  142 (410)
                      +|.-...+|....               .+.....+..+++|++|+++++......+...  ..+++|++|++.++    
T Consensus       197 ~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l--~~l~~L~~L~L~~n~l~~  274 (968)
T PLN00113        197 SNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSL--GNLKNLQYLFLYQNKLSG  274 (968)
T ss_pred             CCCCcCcCChHHcCcCCccEEECcCCccCCcCChhHhcCCCCCEEECcCceeccccChhH--hCCCCCCEEECcCCeeec
Confidence            7652223333000               00111123344444555444442111111111  13445555555444    


Q ss_pred             ------CccccccEEEeeccCcccccccc---cccccEEEEEeCCCccchhhhhhhcccCceEEEeccccccccccchhh
Q 036454          143 ------DVFANLEELTLSKCIFTTWRQAQ---FHKLKILHFISDGSDFFQVGLLQNIHNLEKLVLSTCEYKKIFSCEEVE  213 (410)
Q Consensus       143 ------~~l~~L~~L~i~~~~~~~~~~~~---l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~  213 (410)
                            ..+++|++|++++|......+..   +++|+.|++..+.........+..+++|+.|++++|.+....+     
T Consensus       275 ~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p-----  349 (968)
T PLN00113        275 PIPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIP-----  349 (968)
T ss_pred             cCchhHhhccCcCEEECcCCeeccCCChhHcCCCCCcEEECCCCccCCcCChhHhcCCCCCEEECcCCCCcCcCC-----
Confidence                  12344555555555444333221   4455555553332222222334455555555555554432211     


Q ss_pred             ccccccCcccEEEeCCccccc-------------------ccccCCCCccccccccceEEEEecccccccccccCccccC
Q 036454          214 EHAEGIAQIKSLKLKKLWLIE-------------------EHLWNPDSKLDSFLQNLEFLEVKKCALSLISLVPSSASFR  274 (410)
Q Consensus       214 ~~~~~l~~L~~L~l~~c~~l~-------------------~~~~~~~~~~~~~~~~L~~L~l~~~~~~l~~l~~~~~~~~  274 (410)
                      ..+..+++|+.|+++++...+                   +.+....+..+..+++|+.|++.+|. ....++..+..++
T Consensus       350 ~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~L~~L~L~~n~-l~~~~p~~~~~l~  428 (968)
T PLN00113        350 KNLGKHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNS-FSGELPSEFTKLP  428 (968)
T ss_pred             hHHhCCCCCcEEECCCCeeEeeCChhHhCcCCCCEEECcCCEecccCCHHHhCCCCCCEEECcCCE-eeeECChhHhcCC
Confidence            122334555555555432110                   00100111223345555556655553 2223444445556


Q ss_pred             ccCEEEEcccCCcccccchhhhhcCCCccEEEeccCcccchhccccCCCCccccccccceeecCcCcccceecCCCcccC
Q 036454          275 NLTVLKVCNCWQLISLVTPQTAKTLVQLRELRVSECNRLEEIVANDGDADDEIVFSKLKWLFLESSESITSFCSGNYAFS  354 (410)
Q Consensus       275 ~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~  354 (410)
                      +|+.|+++++. +..... .....+++|+.|++++|.-...++... .      .++|+.|+++++.-....+.  .+..
T Consensus       429 ~L~~L~Ls~N~-l~~~~~-~~~~~l~~L~~L~L~~n~~~~~~p~~~-~------~~~L~~L~ls~n~l~~~~~~--~~~~  497 (968)
T PLN00113        429 LVYFLDISNNN-LQGRIN-SRKWDMPSLQMLSLARNKFFGGLPDSF-G------SKRLENLDLSRNQFSGAVPR--KLGS  497 (968)
T ss_pred             CCCEEECcCCc-ccCccC-hhhccCCCCcEEECcCceeeeecCccc-c------cccceEEECcCCccCCccCh--hhhh
Confidence            66666665542 322211 223456778888887775544444332 2      57899999999753333332  2346


Q ss_pred             CCCccEEEEecCCCCcccCCCCCCCCCcceeEecccch
Q 036454          355 FPSLEDLIVENCPKLNTFSAGVLKTPRLQAVQNWELGE  392 (410)
Q Consensus       355 ~~~L~~L~l~~c~~l~~~~~~~~~~~~L~~l~~~~~~~  392 (410)
                      +++|++|++++|.-...+|..+..+++|++|+++.|.-
T Consensus       498 l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l  535 (968)
T PLN00113        498 LSELMQLKLSENKLSGEIPDELSSCKKLVSLDLSHNQL  535 (968)
T ss_pred             hhccCEEECcCCcceeeCChHHcCccCCCEEECCCCcc
Confidence            88999999999876667888888899999999985543

>PLN03210 Resistant to P

Probab=99.89  E-value=3.6e-22  Score=213.59  Aligned_cols=295  Identities=20%  Similarity=0.275  Sum_probs=135.5

Q ss_pred             cCCcEEEecCccccccccccCCccccccCcccEEEeccCcCccccCchhHHhhhhccceEeeccccCcceEeccCCCCCC
Q 036454           19 TQLRELHVFHLPKLTKLWNKDPQGKLIFRNLVVVRIFDCQSLKNIFPTSIARSLLRLETLSIKDCGSVEEIVANDGRGND   98 (410)
Q Consensus        19 ~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~   98 (410)
                      .+|+.|++.++ .++.+|    .++..+++|++|+++++..+..++..   ..+++|++|++++|..+..+|.       
T Consensus       611 ~~L~~L~L~~s-~l~~L~----~~~~~l~~Lk~L~Ls~~~~l~~ip~l---s~l~~Le~L~L~~c~~L~~lp~-------  675 (1153)
T PLN03210        611 ENLVKLQMQGS-KLEKLW----DGVHSLTGLRNIDLRGSKNLKEIPDL---SMATNLETLKLSDCSSLVELPS-------  675 (1153)
T ss_pred             cCCcEEECcCc-cccccc----cccccCCCCCEEECCCCCCcCcCCcc---ccCCcccEEEecCCCCccccch-------
Confidence            34555555544 344443    23335666666666666555555433   4566666666666665666655       


Q ss_pred             CcccccCCCccEEeeccCCCccccccCcccCCCCCceEEEEccCCccccccEEEeeccCcccccccccccccEEEEEeCC
Q 036454           99 AATKFIFPSLTFLRLRDLPDLTTFYSGMHILECPELRKLEVNHVDVFANLEELTLSKCIFTTWRQAQFHKLKILHFISDG  178 (410)
Q Consensus        99 ~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~l~~L~~L~i~~~~~~~~~~~~l~~L~~L~l~~~~  178 (410)
                        .+..+++|+.|++++|..+..+|...   .+++|+.|++++|              ......+....+|+.|++....
T Consensus       676 --si~~L~~L~~L~L~~c~~L~~Lp~~i---~l~sL~~L~Lsgc--------------~~L~~~p~~~~nL~~L~L~~n~  736 (1153)
T PLN03210        676 --SIQYLNKLEDLDMSRCENLEILPTGI---NLKSLYRLNLSGC--------------SRLKSFPDISTNISWLDLDETA  736 (1153)
T ss_pred             --hhhccCCCCEEeCCCCCCcCccCCcC---CCCCCCEEeCCCC--------------CCccccccccCCcCeeecCCCc
Confidence              55566666666666666666555433   3456666666655              2222222223344444443333


Q ss_pred             CccchhhhhhhcccCceEEEecccccccccc--chhhccccccCcccEEEeCCcccccccccCCCCccccccccceEEEE
Q 036454          179 SDFFQVGLLQNIHNLEKLVLSTCEYKKIFSC--EEVEEHAEGIAQIKSLKLKKLWLIEEHLWNPDSKLDSFLQNLEFLEV  256 (410)
Q Consensus       179 ~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~--~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~L~~L~l  256 (410)
                      +..+|..  ..+++|+.|.+.++....+...  ...+.....+++|+.|++++|+.+ ..+    +..+..+++|+.|++
T Consensus       737 i~~lP~~--~~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~sL~~L~Ls~n~~l-~~l----P~si~~L~~L~~L~L  809 (1153)
T PLN03210        737 IEEFPSN--LRLENLDELILCEMKSEKLWERVQPLTPLMTMLSPSLTRLFLSDIPSL-VEL----PSSIQNLHKLEHLEI  809 (1153)
T ss_pred             ccccccc--ccccccccccccccchhhccccccccchhhhhccccchheeCCCCCCc-ccc----ChhhhCCCCCCEEEC
Confidence            3333321  1234444444443221111000  000000112244555555554433 222    222344455555555


Q ss_pred             ecccccccccccCccccCccCEEEEcccCCcccccchhhhhcCCCccEEEeccCcccchhccccCCCCccccccccceee
Q 036454          257 KKCALSLISLVPSSASFRNLTVLKVCNCWQLISLVTPQTAKTLVQLRELRVSECNRLEEIVANDGDADDEIVFSKLKWLF  336 (410)
Q Consensus       257 ~~~~~~l~~l~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~L~~L~  336 (410)
                      ++|. .+..+|... .+++|++|++++|..+..++     ...++|++|++++ +.++.+|..++.      +++|+.|+
T Consensus       810 s~C~-~L~~LP~~~-~L~sL~~L~Ls~c~~L~~~p-----~~~~nL~~L~Ls~-n~i~~iP~si~~------l~~L~~L~  875 (1153)
T PLN03210        810 ENCI-NLETLPTGI-NLESLESLDLSGCSRLRTFP-----DISTNISDLNLSR-TGIEEVPWWIEK------FSNLSFLD  875 (1153)
T ss_pred             CCCC-CcCeeCCCC-CccccCEEECCCCCcccccc-----ccccccCEeECCC-CCCccChHHHhc------CCCCCEEE
Confidence            5554 444444322 34455555555554444443     1223455555544 244444444444      45555555


Q ss_pred             cCcCcccceecCCCcccCCCCccEEEEecCCCCc
Q 036454          337 LESSESITSFCSGNYAFSFPSLEDLIVENCPKLN  370 (410)
Q Consensus       337 l~~c~~l~~~~~~~~~~~~~~L~~L~l~~c~~l~  370 (410)
                      +.+|++++.++...  ..+++|+.+++.+|+++.
T Consensus       876 L~~C~~L~~l~~~~--~~L~~L~~L~l~~C~~L~  907 (1153)
T PLN03210        876 MNGCNNLQRVSLNI--SKLKHLETVDFSDCGALT  907 (1153)
T ss_pred             CCCCCCcCccCccc--ccccCCCeeecCCCcccc
Confidence            55555555444322  224445555555554443

syringae 6; Provisional

>PLN03210 Resistant to P

Probab=99.88  E-value=1.1e-21  Score=209.94  Aligned_cols=335  Identities=19%  Similarity=0.195  Sum_probs=249.5

Q ss_pred             cccccccCCcEEEecCcc--ccccccccCCccccccC-cccEEEeccCcCccccCchhHHhhhhccceEeeccccCcceE
Q 036454           13 THSGAATQLRELHVFHLP--KLTKLWNKDPQGKLIFR-NLVVVRIFDCQSLKNIFPTSIARSLLRLETLSIKDCGSVEEI   89 (410)
Q Consensus        13 ~~~~~~~~L~~L~l~~~~--~l~~~~~~~~~~~~~l~-~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~   89 (410)
                      .....|++|+.|.+....  .....-...|.++..+| +||.|++.++ .++.+|..   -...+|++|+++++. ++.+
T Consensus       552 ~aF~~m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~-~l~~lP~~---f~~~~L~~L~L~~s~-l~~L  626 (1153)
T PLN03210        552 NAFKGMRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKY-PLRCMPSN---FRPENLVKLQMQGSK-LEKL  626 (1153)
T ss_pred             HHHhcCccccEEEEecccccccccceeecCcchhhcCcccEEEEecCC-CCCCCCCc---CCccCCcEEECcCcc-cccc
Confidence            346679999999986542  11111112255565654 6999999987 56666554   256899999999986 8888


Q ss_pred             eccCCCCCCCcccccCCCccEEeeccCCCccccccCcccCCCCCceEEEEccC----------CccccccEEEeeccCcc
Q 036454           90 VANDGRGNDAATKFIFPSLTFLRLRDLPDLTTFYSGMHILECPELRKLEVNHV----------DVFANLEELTLSKCIFT  159 (410)
Q Consensus        90 ~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~~----------~~l~~L~~L~i~~~~~~  159 (410)
                      +.         .+..+++|+.|+++++..+..++..   ..+++|++|++.+|          ..+++|+.|++++|...
T Consensus       627 ~~---------~~~~l~~Lk~L~Ls~~~~l~~ip~l---s~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L  694 (1153)
T PLN03210        627 WD---------GVHSLTGLRNIDLRGSKNLKEIPDL---SMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENL  694 (1153)
T ss_pred             cc---------ccccCCCCCEEECCCCCCcCcCCcc---ccCCcccEEEecCCCCccccchhhhccCCCCEEeCCCCCCc
Confidence            76         6678899999999998777777642   35799999999998          34578889999988655


Q ss_pred             cccccc--cccccEEEE-EeCCCccchhhhhhhcccCceEEEeccccccccccchhhccccccCcccEEEeCCccccccc
Q 036454          160 TWRQAQ--FHKLKILHF-ISDGSDFFQVGLLQNIHNLEKLVLSTCEYKKIFSCEEVEEHAEGIAQIKSLKLKKLWLIEEH  236 (410)
Q Consensus       160 ~~~~~~--l~~L~~L~l-~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~  236 (410)
                      ...+..  +++|+.|++ .+.....+|.    ..++|+.|.++++.+..++.       ...+++|++|.+.++...  .
T Consensus       695 ~~Lp~~i~l~sL~~L~Lsgc~~L~~~p~----~~~nL~~L~L~~n~i~~lP~-------~~~l~~L~~L~l~~~~~~--~  761 (1153)
T PLN03210        695 EILPTGINLKSLYRLNLSGCSRLKSFPD----ISTNISWLDLDETAIEEFPS-------NLRLENLDELILCEMKSE--K  761 (1153)
T ss_pred             CccCCcCCCCCCCEEeCCCCCCcccccc----ccCCcCeeecCCCccccccc-------cccccccccccccccchh--h
Confidence            444433  788999998 4444444442    24688999999888766654       335788999988875432  1


Q ss_pred             ccCCC----CccccccccceEEEEecccccccccccCccccCccCEEEEcccCCcccccchhhhhcCCCccEEEeccCcc
Q 036454          237 LWNPD----SKLDSFLQNLEFLEVKKCALSLISLVPSSASFRNLTVLKVCNCWQLISLVTPQTAKTLVQLRELRVSECNR  312 (410)
Q Consensus       237 ~~~~~----~~~~~~~~~L~~L~l~~~~~~l~~l~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~  312 (410)
                      ++...    ......+++|+.|++++|. .+..+|..++.+++|+.|++++|.+++.+|..   ..+++|+.|++++|..
T Consensus       762 l~~~~~~l~~~~~~~~~sL~~L~Ls~n~-~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~---~~L~sL~~L~Ls~c~~  837 (1153)
T PLN03210        762 LWERVQPLTPLMTMLSPSLTRLFLSDIP-SLVELPSSIQNLHKLEHLEIENCINLETLPTG---INLESLESLDLSGCSR  837 (1153)
T ss_pred             ccccccccchhhhhccccchheeCCCCC-CccccChhhhCCCCCCEEECCCCCCcCeeCCC---CCccccCEEECCCCCc
Confidence            11100    1112345799999999998 88889888899999999999999999888742   2689999999999998


Q ss_pred             cchhccccCCCCccccccccceeecCcCcccceecCCCcccCCCCccEEEEecCCCCcccCCCCCCCCCcceeEecccch
Q 036454          313 LEEIVANDGDADDEIVFSKLKWLFLESSESITSFCSGNYAFSFPSLEDLIVENCPKLNTFSAGVLKTPRLQAVQNWELGE  392 (410)
Q Consensus       313 l~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~L~~l~~~~~~~  392 (410)
                      +..++..         .++|+.|++.+ +.++.++...  ..+++|++|++.+|++++.+|....++++|+.++++++..
T Consensus       838 L~~~p~~---------~~nL~~L~Ls~-n~i~~iP~si--~~l~~L~~L~L~~C~~L~~l~~~~~~L~~L~~L~l~~C~~  905 (1153)
T PLN03210        838 LRTFPDI---------STNISDLNLSR-TGIEEVPWWI--EKFSNLSFLDMNGCNNLQRVSLNISKLKHLETVDFSDCGA  905 (1153)
T ss_pred             ccccccc---------ccccCEeECCC-CCCccChHHH--hcCCCCCEEECCCCCCcCccCcccccccCCCeeecCCCcc
Confidence            8777642         56899999998 4677776543  4699999999999999999998888899999999986653


Q ss_pred             h
Q 036454          393 D  393 (410)
Q Consensus       393 ~  393 (410)
                      .
T Consensus       906 L  906 (1153)
T PLN03210        906 L  906 (1153)
T ss_pred             c
Confidence            3

syringae 6; Provisional

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]

Probab=99.85  E-value=2.4e-22  Score=187.09  Aligned_cols=329  Identities=18%  Similarity=0.167  Sum_probs=162.5

Q ss_pred             cCCcEEEecCccccccccccCCccccccCcccEEEeccCcCccccCchhHHhhhhccceEeeccccCcceEeccCCCCCC
Q 036454           19 TQLRELHVFHLPKLTKLWNKDPQGKLIFRNLVVVRIFDCQSLKNIFPTSIARSLLRLETLSIKDCGSVEEIVANDGRGND   98 (410)
Q Consensus        19 ~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~   98 (410)
                      +..+.|++++. .+..+   .+.+|-.+++|+.+++..+ -+..+|..+  +-..||+.|++.++. +..+..       
T Consensus        78 ~~t~~LdlsnN-kl~~i---d~~~f~nl~nLq~v~l~~N-~Lt~IP~f~--~~sghl~~L~L~~N~-I~sv~s-------  142 (873)
T KOG4194|consen   78 SQTQTLDLSNN-KLSHI---DFEFFYNLPNLQEVNLNKN-ELTRIPRFG--HESGHLEKLDLRHNL-ISSVTS-------  142 (873)
T ss_pred             cceeeeecccc-ccccC---cHHHHhcCCcceeeeeccc-hhhhccccc--ccccceeEEeeeccc-cccccH-------
Confidence            44455666665 23321   1344456666666666655 444454442  334456666666553 433332       


Q ss_pred             CcccccCCCccEEeeccCCCccccccCcccCCCCCceEEEEccC----------CccccccEEEeeccCcccccccc---
Q 036454           99 AATKFIFPSLTFLRLRDLPDLTTFYSGMHILECPELRKLEVNHV----------DVFANLEELTLSKCIFTTWRQAQ---  165 (410)
Q Consensus        99 ~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~~----------~~l~~L~~L~i~~~~~~~~~~~~---  165 (410)
                       +.+..++.|+.||||.+ .+.+++...++ +-.++++|++.++          ..+.+|..|.+++|++...++..   
T Consensus       143 -e~L~~l~alrslDLSrN-~is~i~~~sfp-~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNrittLp~r~Fk~  219 (873)
T KOG4194|consen  143 -EELSALPALRSLDLSRN-LISEIPKPSFP-AKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLSRNRITTLPQRSFKR  219 (873)
T ss_pred             -HHHHhHhhhhhhhhhhc-hhhcccCCCCC-CCCCceEEeeccccccccccccccccchheeeecccCcccccCHHHhhh
Confidence             24444555666666554 44444433322 2345555555554          33345555555555555544433   


Q ss_pred             cccccEEEEEe------------------------CCCccchhhhhhhcccCceEEEeccccccccccchhhccccccCc
Q 036454          166 FHKLKILHFIS------------------------DGSDFFQVGLLQNIHNLEKLVLSTCEYKKIFSCEEVEEHAEGIAQ  221 (410)
Q Consensus       166 l~~L~~L~l~~------------------------~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~  221 (410)
                      +++|+.|++..                        +.+.......+..+.++++|+++.+++..+..     ....++..
T Consensus       220 L~~L~~LdLnrN~irive~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~-----g~lfgLt~  294 (873)
T KOG4194|consen  220 LPKLESLDLNRNRIRIVEGLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQAVNE-----GWLFGLTS  294 (873)
T ss_pred             cchhhhhhccccceeeehhhhhcCchhhhhhhhhhcCcccccCcceeeecccceeecccchhhhhhc-----ccccccch
Confidence            44455555533                        33333333334444444444444444333322     12234455


Q ss_pred             ccEEEeCCcccccccccCCCCccccccccceEEEEeccccccccccc-CccccCccCEEEEcccCCcccccchhhhhcCC
Q 036454          222 IKSLKLKKLWLIEEHLWNPDSKLDSFLQNLEFLEVKKCALSLISLVP-SSASFRNLTVLKVCNCWQLISLVTPQTAKTLV  300 (410)
Q Consensus       222 L~~L~l~~c~~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~l~~l~~-~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~  300 (410)
                      |+.|+++.     +.+.......-..+++|++|++++|  .++++++ .+..+..|++|.+++. ++..+.. .....+.
T Consensus       295 L~~L~lS~-----NaI~rih~d~WsftqkL~~LdLs~N--~i~~l~~~sf~~L~~Le~LnLs~N-si~~l~e-~af~~ls  365 (873)
T KOG4194|consen  295 LEQLDLSY-----NAIQRIHIDSWSFTQKLKELDLSSN--RITRLDEGSFRVLSQLEELNLSHN-SIDHLAE-GAFVGLS  365 (873)
T ss_pred             hhhhccch-----hhhheeecchhhhcccceeEecccc--ccccCChhHHHHHHHhhhhccccc-chHHHHh-hHHHHhh
Confidence            55555554     2222112222234555666666655  4444432 2334455555665443 3444422 2334556


Q ss_pred             CccEEEeccCcc---cchhccccCCCCccccccccceeecCcCcccceecCCCcccCCCCccEEEEecCCCCcccCCCCC
Q 036454          301 QLRELRVSECNR---LEEIVANDGDADDEIVFSKLKWLFLESSESITSFCSGNYAFSFPSLEDLIVENCPKLNTFSAGVL  377 (410)
Q Consensus       301 ~L~~L~l~~c~~---l~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~  377 (410)
                      +|++|++++..-   +++-...+.+      +++|++|.+.+ ++++.++..+ +..+++|+.|++.+.+-...-|..+.
T Consensus       366 sL~~LdLr~N~ls~~IEDaa~~f~g------l~~LrkL~l~g-Nqlk~I~krA-fsgl~~LE~LdL~~NaiaSIq~nAFe  437 (873)
T KOG4194|consen  366 SLHKLDLRSNELSWCIEDAAVAFNG------LPSLRKLRLTG-NQLKSIPKRA-FSGLEALEHLDLGDNAIASIQPNAFE  437 (873)
T ss_pred             hhhhhcCcCCeEEEEEecchhhhcc------chhhhheeecC-ceeeecchhh-hccCcccceecCCCCcceeecccccc
Confidence            677777665321   1222233333      77777777777 5677766553 44677777777766544443445554


Q ss_pred             CCCCcceeEec
Q 036454          378 KTPRLQAVQNW  388 (410)
Q Consensus       378 ~~~~L~~l~~~  388 (410)
                      .+ .|++|.+.
T Consensus       438 ~m-~Lk~Lv~n  447 (873)
T KOG4194|consen  438 PM-ELKELVMN  447 (873)
T ss_pred             cc-hhhhhhhc
Confidence            44 77777765

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]

Probab=99.83  E-value=1.5e-21  Score=181.82  Aligned_cols=314  Identities=18%  Similarity=0.171  Sum_probs=216.7

Q ss_pred             cCcccEEEeccCcCccccCchhHHhhhhccceEeeccccCcceEeccCCCCCCCcccccCCCccEEeeccCCCccccccC
Q 036454           46 FRNLVVVRIFDCQSLKNIFPTSIARSLLRLETLSIKDCGSVEEIVANDGRGNDAATKFIFPSLTFLRLRDLPDLTTFYSG  125 (410)
Q Consensus        46 l~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~  125 (410)
                      .+.-+.|+++++ .+.++.+..+ .++|+|+++++.++. ++.+|.         ......+|+.|+|..+ .+.++...
T Consensus        77 p~~t~~LdlsnN-kl~~id~~~f-~nl~nLq~v~l~~N~-Lt~IP~---------f~~~sghl~~L~L~~N-~I~sv~se  143 (873)
T KOG4194|consen   77 PSQTQTLDLSNN-KLSHIDFEFF-YNLPNLQEVNLNKNE-LTRIPR---------FGHESGHLEKLDLRHN-LISSVTSE  143 (873)
T ss_pred             ccceeeeecccc-ccccCcHHHH-hcCCcceeeeeccch-hhhccc---------ccccccceeEEeeecc-ccccccHH
Confidence            455677999988 7777755444 799999999999987 999986         3333467999999887 66666655


Q ss_pred             cccCCCCCceEEEEccC----------CccccccEEEeeccCcccccccc---cccccEEEEEeCCCccchhhhhhhccc
Q 036454          126 MHILECPELRKLEVNHV----------DVFANLEELTLSKCIFTTWRQAQ---FHKLKILHFISDGSDFFQVGLLQNIHN  192 (410)
Q Consensus       126 ~~~~~~~~L~~L~l~~~----------~~l~~L~~L~i~~~~~~~~~~~~---l~~L~~L~l~~~~~~~~~~~~l~~l~~  192 (410)
                      ... .++.|+.|+++.+          +.-+++++|++++|++..+....   +.+|..|.+..+.++.+|...+..+++
T Consensus       144 ~L~-~l~alrslDLSrN~is~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNrittLp~r~Fk~L~~  222 (873)
T KOG4194|consen  144 ELS-ALPALRSLDLSRNLISEIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLSRNRITTLPQRSFKRLPK  222 (873)
T ss_pred             HHH-hHhhhhhhhhhhchhhcccCCCCCCCCCceEEeeccccccccccccccccchheeeecccCcccccCHHHhhhcch
Confidence            554 7899999999888          33457999999999998887665   778889999999999999999999999


Q ss_pred             CceEEEeccccccccccchhhccccccCcccEEEeCCc-------------cccc------ccccCCCCccccccccceE
Q 036454          193 LEKLVLSTCEYKKIFSCEEVEEHAEGIAQIKSLKLKKL-------------WLIE------EHLWNPDSKLDSFLQNLEF  253 (410)
Q Consensus       193 L~~L~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~c-------------~~l~------~~~~~~~~~~~~~~~~L~~  253 (410)
                      |+.|++..+.++.+     ....+.++++|+.|++..-             .++|      +.+..-...++-.+..|+.
T Consensus       223 L~~LdLnrN~iriv-----e~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~  297 (873)
T KOG4194|consen  223 LESLDLNRNRIRIV-----EGLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQ  297 (873)
T ss_pred             hhhhhccccceeee-----hhhhhcCchhhhhhhhhhcCcccccCcceeeecccceeecccchhhhhhcccccccchhhh
Confidence            99999999876655     1124667777777776541             1110      1110001123344566666


Q ss_pred             EEEeccccccccccc-CccccCccCEEEEcccCCcccccchhhhhcCCCccEEEeccCcccchhccccCCCCcccccccc
Q 036454          254 LEVKKCALSLISLVP-SSASFRNLTVLKVCNCWQLISLVTPQTAKTLVQLRELRVSECNRLEEIVANDGDADDEIVFSKL  332 (410)
Q Consensus       254 L~l~~~~~~l~~l~~-~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~L  332 (410)
                      |++++|  .+..+.. .....++|+.|++++. +++.+++ .....+..|++|.++. +.+..+....-     ..+++|
T Consensus       298 L~lS~N--aI~rih~d~WsftqkL~~LdLs~N-~i~~l~~-~sf~~L~~Le~LnLs~-Nsi~~l~e~af-----~~lssL  367 (873)
T KOG4194|consen  298 LDLSYN--AIQRIHIDSWSFTQKLKELDLSSN-RITRLDE-GSFRVLSQLEELNLSH-NSIDHLAEGAF-----VGLSSL  367 (873)
T ss_pred             hccchh--hhheeecchhhhcccceeEecccc-ccccCCh-hHHHHHHHhhhhcccc-cchHHHHhhHH-----HHhhhh
Confidence            667666  3444432 2345567777777554 5666654 3445567778888876 34444432211     127889


Q ss_pred             ceeecCcCcccceecCC--CcccCCCCccEEEEecCCCCcccCCC-CCCCCCcceeEeccc
Q 036454          333 KWLFLESSESITSFCSG--NYAFSFPSLEDLIVENCPKLNTFSAG-VLKTPRLQAVQNWEL  390 (410)
Q Consensus       333 ~~L~l~~c~~l~~~~~~--~~~~~~~~L~~L~l~~c~~l~~~~~~-~~~~~~L~~l~~~~~  390 (410)
                      ++|+++. +++......  .-+..+|+|+.|++.+. +++++|.. +..+++|++|++-+|
T Consensus       368 ~~LdLr~-N~ls~~IEDaa~~f~gl~~LrkL~l~gN-qlk~I~krAfsgl~~LE~LdL~~N  426 (873)
T KOG4194|consen  368 HKLDLRS-NELSWCIEDAAVAFNGLPSLRKLRLTGN-QLKSIPKRAFSGLEALEHLDLGDN  426 (873)
T ss_pred             hhhcCcC-CeEEEEEecchhhhccchhhhheeecCc-eeeecchhhhccCcccceecCCCC
Confidence            9999987 445433211  12446999999999775 88888844 446899999999633

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]

Probab=99.75  E-value=1.4e-20  Score=176.82  Aligned_cols=330  Identities=19%  Similarity=0.217  Sum_probs=215.9

Q ss_pred             ccccccCCcEEEecCccccccccccCCccccccCcccEEEeccCcCccccCchhHHhhhhccceEeeccccCcce--Eec
Q 036454           14 HSGAATQLRELHVFHLPKLTKLWNKDPQGKLIFRNLVVVRIFDCQSLKNIFPTSIARSLLRLETLSIKDCGSVEE--IVA   91 (410)
Q Consensus        14 ~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~--~~~   91 (410)
                      .+.+|.+++.|.+++. ++..+    |+.++.+.+|..|.+.++. +..+..  -...+|.|+.+.++.+. ++.  +|.
T Consensus        27 ~v~qMt~~~WLkLnrt-~L~~v----PeEL~~lqkLEHLs~~HN~-L~~vhG--ELs~Lp~LRsv~~R~N~-LKnsGiP~   97 (1255)
T KOG0444|consen   27 DVEQMTQMTWLKLNRT-KLEQV----PEELSRLQKLEHLSMAHNQ-LISVHG--ELSDLPRLRSVIVRDNN-LKNSGIPT   97 (1255)
T ss_pred             hHHHhhheeEEEechh-hhhhC----hHHHHHHhhhhhhhhhhhh-hHhhhh--hhccchhhHHHhhhccc-cccCCCCc
Confidence            3667888888888886 55555    8888888999999988873 332211  12577888888888765 543  443


Q ss_pred             cCCCCCCCcccccCCCccEEeeccCCCccccccCcccCCCCCceEEEEccC----------CccccccEEEeeccCcccc
Q 036454           92 NDGRGNDAATKFIFPSLTFLRLRDLPDLTTFYSGMHILECPELRKLEVNHV----------DVFANLEELTLSKCIFTTW  161 (410)
Q Consensus        92 ~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~~----------~~l~~L~~L~i~~~~~~~~  161 (410)
                               .+..+.-|..||||.+ .+++.|.+.  ..-.++-.|+++++          .++..|-.|+++.|+....
T Consensus        98 ---------diF~l~dLt~lDLShN-qL~EvP~~L--E~AKn~iVLNLS~N~IetIPn~lfinLtDLLfLDLS~NrLe~L  165 (1255)
T KOG0444|consen   98 ---------DIFRLKDLTILDLSHN-QLREVPTNL--EYAKNSIVLNLSYNNIETIPNSLFINLTDLLFLDLSNNRLEML  165 (1255)
T ss_pred             ---------hhcccccceeeecchh-hhhhcchhh--hhhcCcEEEEcccCccccCCchHHHhhHhHhhhccccchhhhc
Confidence                     6677788888999887 777777654  34567777888777          3345566788888888888


Q ss_pred             cccc--cccccEEEEEeCCCccchhhhhhhcccCceEEEeccc--cccccccchhhccccccCcccEEEeCCcccccccc
Q 036454          162 RQAQ--FHKLKILHFISDGSDFFQVGLLQNIHNLEKLVLSTCE--YKKIFSCEEVEEHAEGIAQIKSLKLKKLWLIEEHL  237 (410)
Q Consensus       162 ~~~~--l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~--~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~  237 (410)
                      +|..  +..|+.|+++.+....+...++..+++|+.|.+++..  ...++.      +..++.||+.++++.     +++
T Consensus       166 PPQ~RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Pt------sld~l~NL~dvDlS~-----N~L  234 (1255)
T KOG0444|consen  166 PPQIRRLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPT------SLDDLHNLRDVDLSE-----NNL  234 (1255)
T ss_pred             CHHHHHHhhhhhhhcCCChhhHHHHhcCccchhhhhhhcccccchhhcCCC------chhhhhhhhhccccc-----cCC
Confidence            8776  8888888888888777776666677777777777753  233333      455567777777765     333


Q ss_pred             cCCCCccccccccceEEEEecccccccccccCccccCccCEEEEcccCCcccccchhhhhcCCCccEEEeccCc-ccchh
Q 036454          238 WNPDSKLDSFLQNLEFLEVKKCALSLISLVPSSASFRNLTVLKVCNCWQLISLVTPQTAKTLVQLRELRVSECN-RLEEI  316 (410)
Q Consensus       238 ~~~~~~~~~~~~~L~~L~l~~~~~~l~~l~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~-~l~~~  316 (410)
                      +. .++.+-.+++|+.|++++|  .++.+.-..+.-.+|++|+++.. .++.+|  .....++.|+.|.+.+.. ..+.+
T Consensus       235 p~-vPecly~l~~LrrLNLS~N--~iteL~~~~~~W~~lEtLNlSrN-QLt~LP--~avcKL~kL~kLy~n~NkL~FeGi  308 (1255)
T KOG0444|consen  235 PI-VPECLYKLRNLRRLNLSGN--KITELNMTEGEWENLETLNLSRN-QLTVLP--DAVCKLTKLTKLYANNNKLTFEGI  308 (1255)
T ss_pred             Cc-chHHHhhhhhhheeccCcC--ceeeeeccHHHHhhhhhhccccc-hhccch--HHHhhhHHHHHHHhccCcccccCC
Confidence            11 1344556677777777777  45555444455566777777654 466665  455666777776665432 23456


Q ss_pred             ccccCCCCccccccccceeecCcCcccceecCCCcccCCCCccEEEEecCCCCcccCCCCCCCCCcceeEecccc
Q 036454          317 VANDGDADDEIVFSKLKWLFLESSESITSFCSGNYAFSFPSLEDLIVENCPKLNTFSAGVLKTPRLQAVQNWELG  391 (410)
Q Consensus       317 ~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~L~~l~~~~~~  391 (410)
                      |.++|.      +.+|+.+..++ +.++-.+.+.  -.|+.|+.|.+ +|..+-++|++..-++-|+.|++.+|.
T Consensus       309 PSGIGK------L~~Levf~aan-N~LElVPEgl--cRC~kL~kL~L-~~NrLiTLPeaIHlL~~l~vLDlreNp  373 (1255)
T KOG0444|consen  309 PSGIGK------LIQLEVFHAAN-NKLELVPEGL--CRCVKLQKLKL-DHNRLITLPEAIHLLPDLKVLDLRENP  373 (1255)
T ss_pred             ccchhh------hhhhHHHHhhc-cccccCchhh--hhhHHHHHhcc-cccceeechhhhhhcCCcceeeccCCc
Confidence            666666      66666666665 4454444332  23667777766 455666677766666777777776443

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]

Probab=99.70  E-value=1.5e-19  Score=169.99  Aligned_cols=316  Identities=20%  Similarity=0.213  Sum_probs=205.7

Q ss_pred             ccccccCCcEEEecCccccccccccCCccccccCcccEEEeccCcCccccCchhHHhhhhccceEeeccccCcceEeccC
Q 036454           14 HSGAATQLRELHVFHLPKLTKLWNKDPQGKLIFRNLVVVRIFDCQSLKNIFPTSIARSLLRLETLSIKDCGSVEEIVAND   93 (410)
Q Consensus        14 ~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~   93 (410)
                      .++.+.+|+.|.+++. .+..+.    ..+..+|.||.+.++.+.--..-.|..++ ++..|..||++.+. +++.|.  
T Consensus        50 EL~~lqkLEHLs~~HN-~L~~vh----GELs~Lp~LRsv~~R~N~LKnsGiP~diF-~l~dLt~lDLShNq-L~EvP~--  120 (1255)
T KOG0444|consen   50 ELSRLQKLEHLSMAHN-QLISVH----GELSDLPRLRSVIVRDNNLKNSGIPTDIF-RLKDLTILDLSHNQ-LREVPT--  120 (1255)
T ss_pred             HHHHHhhhhhhhhhhh-hhHhhh----hhhccchhhHHHhhhccccccCCCCchhc-ccccceeeecchhh-hhhcch--
Confidence            3777888888888886 333332    22336777777777766322222233443 67777777777765 777776  


Q ss_pred             CCCCCCcccccCCCccEEeeccCCCccccccCcccCCCCCceEEEEccC---------CccccccEEEeeccCccccccc
Q 036454           94 GRGNDAATKFIFPSLTFLRLRDLPDLTTFYSGMHILECPELRKLEVNHV---------DVFANLEELTLSKCIFTTWRQA  164 (410)
Q Consensus        94 ~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~~---------~~l~~L~~L~i~~~~~~~~~~~  164 (410)
                             .+-.-+++-.|+||++ ++..+|...+. ++.-|-.|+++++         ..+..|++|.+++|+.....-.
T Consensus       121 -------~LE~AKn~iVLNLS~N-~IetIPn~lfi-nLtDLLfLDLS~NrLe~LPPQ~RRL~~LqtL~Ls~NPL~hfQLr  191 (1255)
T KOG0444|consen  121 -------NLEYAKNSIVLNLSYN-NIETIPNSLFI-NLTDLLFLDLSNNRLEMLPPQIRRLSMLQTLKLSNNPLNHFQLR  191 (1255)
T ss_pred             -------hhhhhcCcEEEEcccC-ccccCCchHHH-hhHhHhhhccccchhhhcCHHHHHHhhhhhhhcCCChhhHHHHh
Confidence                   4444466667777765 55566554443 4555666666666         3345677777777776554433


Q ss_pred             c---cccccEEEEEe--CCCccchhhhhhhcccCceEEEeccccccccccchhhccccccCcccEEEeCCcccccccccC
Q 036454          165 Q---FHKLKILHFIS--DGSDFFQVGLLQNIHNLEKLVLSTCEYKKIFSCEEVEEHAEGIAQIKSLKLKKLWLIEEHLWN  239 (410)
Q Consensus       165 ~---l~~L~~L~l~~--~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~  239 (410)
                      .   +.+|+.|.+++  .....+| ..+..+.+|..++++.+.+..++.      ....+++|+.|++++     +.++.
T Consensus       192 QLPsmtsL~vLhms~TqRTl~N~P-tsld~l~NL~dvDlS~N~Lp~vPe------cly~l~~LrrLNLS~-----N~ite  259 (1255)
T KOG0444|consen  192 QLPSMTSLSVLHMSNTQRTLDNIP-TSLDDLHNLRDVDLSENNLPIVPE------CLYKLRNLRRLNLSG-----NKITE  259 (1255)
T ss_pred             cCccchhhhhhhcccccchhhcCC-CchhhhhhhhhccccccCCCcchH------HHhhhhhhheeccCc-----Cceee
Confidence            3   34455555522  2233444 345677788888888877766665      356678888888887     33311


Q ss_pred             CCCccccccccceEEEEecccccccccccCccccCccCEEEEcccCCcccccchhhhhcCCCccEEEeccCcccchhccc
Q 036454          240 PDSKLDSFLQNLEFLEVKKCALSLISLVPSSASFRNLTVLKVCNCWQLISLVTPQTAKTLVQLRELRVSECNRLEEIVAN  319 (410)
Q Consensus       240 ~~~~~~~~~~~L~~L~l~~~~~~l~~l~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~  319 (410)
                      . ....+...+|++|+++.|  .++.+|...-.+++|+.|...+. .+..-...++++.+..|+.+...+ +.++-+|.+
T Consensus       260 L-~~~~~~W~~lEtLNlSrN--QLt~LP~avcKL~kL~kLy~n~N-kL~FeGiPSGIGKL~~Levf~aan-N~LElVPEg  334 (1255)
T KOG0444|consen  260 L-NMTEGEWENLETLNLSRN--QLTVLPDAVCKLTKLTKLYANNN-KLTFEGIPSGIGKLIQLEVFHAAN-NKLELVPEG  334 (1255)
T ss_pred             e-eccHHHHhhhhhhccccc--hhccchHHHhhhHHHHHHHhccC-cccccCCccchhhhhhhHHHHhhc-cccccCchh
Confidence            1 123455678888999888  78888877777888888877543 343333336778888888888876 577888887


Q ss_pred             cCCCCccccccccceeecCcCcccceecCCCcccCCCCccEEEEecCCCCcccC
Q 036454          320 DGDADDEIVFSKLKWLFLESSESITSFCSGNYAFSFPSLEDLIVENCPKLNTFS  373 (410)
Q Consensus       320 ~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~  373 (410)
                      +..      +++|+.|.+.. +.+-.++..+..  +|.|+.|++...|++..-|
T Consensus       335 lcR------C~kL~kL~L~~-NrLiTLPeaIHl--L~~l~vLDlreNpnLVMPP  379 (1255)
T KOG0444|consen  335 LCR------CVKLQKLKLDH-NRLITLPEAIHL--LPDLKVLDLRENPNLVMPP  379 (1255)
T ss_pred             hhh------hHHHHHhcccc-cceeechhhhhh--cCCcceeeccCCcCccCCC
Confidence            777      88999998876 566677766544  8899999999888886444

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]

Probab=99.65  E-value=4.9e-18  Score=166.38  Aligned_cols=356  Identities=21%  Similarity=0.204  Sum_probs=200.2

Q ss_pred             ccccccCccc--cccccccCCcEEEecCccccccccccCCccccccCcccEEEeccCcCccccCchhHHhhhhccceEee
Q 036454            3 FDLQEVNSEE--THSGAATQLRELHVFHLPKLTKLWNKDPQGKLIFRNLVVVRIFDCQSLKNIFPTSIARSLLRLETLSI   80 (410)
Q Consensus         3 ~~~~~~~~~~--~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l   80 (410)
                      +|++.+....  .++..+++|++|.++.. .++.+    |..+.++.+|+++.|.++ .+..+ |.++ ..+.+|++|++
T Consensus        50 l~lsnn~~~~fp~~it~l~~L~~ln~s~n-~i~~v----p~s~~~~~~l~~lnL~~n-~l~~l-P~~~-~~lknl~~Ldl  121 (1081)
T KOG0618|consen   50 LDLSNNQISSFPIQITLLSHLRQLNLSRN-YIRSV----PSSCSNMRNLQYLNLKNN-RLQSL-PASI-SELKNLQYLDL  121 (1081)
T ss_pred             eeccccccccCCchhhhHHHHhhcccchh-hHhhC----chhhhhhhcchhheeccc-hhhcC-chhH-Hhhhccccccc
Confidence            4555554444  34666777777777765 33333    566667888888888755 34333 5454 46778888888


Q ss_pred             ccccCcceEeccC----------CCCC--------C-------------CcccccCCCccE-EeeccCCCcccccc----
Q 036454           81 KDCGSVEEIVAND----------GRGN--------D-------------AATKFIFPSLTF-LRLRDLPDLTTFYS----  124 (410)
Q Consensus        81 ~~~~~l~~~~~~~----------~~~~--------~-------------~~~~~~l~~L~~-L~l~~~~~l~~~~~----  124 (410)
                      +++. ...+|.--          ..+.        .             ...+.....+++ |++.++... ....    
T Consensus       122 S~N~-f~~~Pl~i~~lt~~~~~~~s~N~~~~~lg~~~ik~~~l~~n~l~~~~~~~i~~l~~~ldLr~N~~~-~~dls~~~  199 (1081)
T KOG0618|consen  122 SFNH-FGPIPLVIEVLTAEEELAASNNEKIQRLGQTSIKKLDLRLNVLGGSFLIDIYNLTHQLDLRYNEME-VLDLSNLA  199 (1081)
T ss_pred             chhc-cCCCchhHHhhhHHHHHhhhcchhhhhhccccchhhhhhhhhcccchhcchhhhheeeecccchhh-hhhhhhcc
Confidence            7764 43333300          0000        0             000011122333 444443221 0000    


Q ss_pred             --CcccCCCCCceEEEEcc----------C--------CccccccEEEeeccCcccccccc--cccccEEEEEeCCCccc
Q 036454          125 --GMHILECPELRKLEVNH----------V--------DVFANLEELTLSKCIFTTWRQAQ--FHKLKILHFISDGSDFF  182 (410)
Q Consensus       125 --~~~~~~~~~L~~L~l~~----------~--------~~l~~L~~L~i~~~~~~~~~~~~--l~~L~~L~l~~~~~~~~  182 (410)
                        ..+......|.++.+++          |        +...+|+.++++.+.....+.+.  +.+|+.+....+.....
T Consensus       200 ~l~~l~c~rn~ls~l~~~g~~l~~L~a~~n~l~~~~~~p~p~nl~~~dis~n~l~~lp~wi~~~~nle~l~~n~N~l~~l  279 (1081)
T KOG0618|consen  200 NLEVLHCERNQLSELEISGPSLTALYADHNPLTTLDVHPVPLNLQYLDISHNNLSNLPEWIGACANLEALNANHNRLVAL  279 (1081)
T ss_pred             chhhhhhhhcccceEEecCcchheeeeccCcceeeccccccccceeeecchhhhhcchHHHHhcccceEecccchhHHhh
Confidence              00001122333333333          2        11123444444444444443222  44444444433333333


Q ss_pred             hhhhhhhcccCceEEEeccccccccccchhhccccccCcccEEEeCCcccccccccC----------------------C
Q 036454          183 QVGLLQNIHNLEKLVLSTCEYKKIFSCEEVEEHAEGIAQIKSLKLKKLWLIEEHLWN----------------------P  240 (410)
Q Consensus       183 ~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~----------------------~  240 (410)
                      +.+ +...++|+.|.+..|.+..+.+      ...++..|++|+++.-. + ..+.+                      -
T Consensus       280 p~r-i~~~~~L~~l~~~~nel~yip~------~le~~~sL~tLdL~~N~-L-~~lp~~~l~v~~~~l~~ln~s~n~l~~l  350 (1081)
T KOG0618|consen  280 PLR-ISRITSLVSLSAAYNELEYIPP------FLEGLKSLRTLDLQSNN-L-PSLPDNFLAVLNASLNTLNVSSNKLSTL  350 (1081)
T ss_pred             HHH-HhhhhhHHHHHhhhhhhhhCCC------cccccceeeeeeehhcc-c-cccchHHHhhhhHHHHHHhhhhcccccc
Confidence            322 2334445555555554544444      34457888888887621 1 00000                      0


Q ss_pred             CCccccccccceEEEEecccccccccccCccccCccCEEEEcccCCcccccchhhhhcCCCccEEEeccCcccchhcccc
Q 036454          241 DSKLDSFLQNLEFLEVKKCALSLISLVPSSASFRNLTVLKVCNCWQLISLVTPQTAKTLVQLRELRVSECNRLEEIVAND  320 (410)
Q Consensus       241 ~~~~~~~~~~L~~L~l~~~~~~l~~l~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~  320 (410)
                      ....-...+.|+.|++.+|. --+...+.+..+.+|+.|++++. ++..++. ....+++.||+|++++ +.++.++...
T Consensus       351 p~~~e~~~~~Lq~LylanN~-Ltd~c~p~l~~~~hLKVLhLsyN-rL~~fpa-s~~~kle~LeeL~LSG-NkL~~Lp~tv  426 (1081)
T KOG0618|consen  351 PSYEENNHAALQELYLANNH-LTDSCFPVLVNFKHLKVLHLSYN-RLNSFPA-SKLRKLEELEELNLSG-NKLTTLPDTV  426 (1081)
T ss_pred             ccccchhhHHHHHHHHhcCc-ccccchhhhccccceeeeeeccc-ccccCCH-HHHhchHHhHHHhccc-chhhhhhHHH
Confidence            00011234677788888874 33446677889999999999775 6888864 6778999999999999 6888999888


Q ss_pred             CCCCccccccccceeecCcCcccceecCCCcccCCCCccEEEEecCCCCcc--cCCCCCCCCCcceeEecccchh
Q 036454          321 GDADDEIVFSKLKWLFLESSESITSFCSGNYAFSFPSLEDLIVENCPKLNT--FSAGVLKTPRLQAVQNWELGED  393 (410)
Q Consensus       321 ~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~l~~c~~l~~--~~~~~~~~~~L~~l~~~~~~~~  393 (410)
                      ..      ++.|++|...+ +++..++ +.  ..+|.|+.+++ .|.+++.  +|.... .|+||++++.+|...
T Consensus       427 a~------~~~L~tL~ahs-N~l~~fP-e~--~~l~qL~~lDl-S~N~L~~~~l~~~~p-~p~LkyLdlSGN~~l  489 (1081)
T KOG0618|consen  427 AN------LGRLHTLRAHS-NQLLSFP-EL--AQLPQLKVLDL-SCNNLSEVTLPEALP-SPNLKYLDLSGNTRL  489 (1081)
T ss_pred             Hh------hhhhHHHhhcC-Cceeech-hh--hhcCcceEEec-ccchhhhhhhhhhCC-CcccceeeccCCccc
Confidence            88      99999997766 6788887 32  36999999999 5778875  444432 389999999966544

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]

Probab=99.57  E-value=1.1e-17  Score=149.83  Aligned_cols=344  Identities=18%  Similarity=0.147  Sum_probs=175.9

Q ss_pred             cccccCCcEEEecCccccccccccCCccccccCcccEEEeccCcCccccCchhHHhhhhccceEeeccccCcceEeccCC
Q 036454           15 SGAATQLRELHVFHLPKLTKLWNKDPQGKLIFRNLVVVRIFDCQSLKNIFPTSIARSLLRLETLSIKDCGSVEEIVANDG   94 (410)
Q Consensus        15 ~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~   94 (410)
                      +.++..+.+|.+.+. .+.++    |..|+.+.+++.++++.+ ++..+|...  +.++.|+.++.+++. .++++...+
T Consensus        64 l~nL~~l~vl~~~~n-~l~~l----p~aig~l~~l~~l~vs~n-~ls~lp~~i--~s~~~l~~l~~s~n~-~~el~~~i~  134 (565)
T KOG0472|consen   64 LKNLACLTVLNVHDN-KLSQL----PAAIGELEALKSLNVSHN-KLSELPEQI--GSLISLVKLDCSSNE-LKELPDSIG  134 (565)
T ss_pred             hhcccceeEEEeccc-hhhhC----CHHHHHHHHHHHhhcccc-hHhhccHHH--hhhhhhhhhhccccc-eeecCchHH
Confidence            556777777777776 33333    666777777777777766 445554432  566777777776665 555554211


Q ss_pred             C--------C------CCCcccccCCCccEEeeccCCCccccccCcccCCCCCceEEEEccC------------------
Q 036454           95 R--------G------NDAATKFIFPSLTFLRLRDLPDLTTFYSGMHILECPELRKLEVNHV------------------  142 (410)
Q Consensus        95 ~--------~------~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~~------------------  142 (410)
                      .        +      ...+.+..+.+|..+++.++ +++..+...+  ++..|++++..++                  
T Consensus       135 ~~~~l~dl~~~~N~i~slp~~~~~~~~l~~l~~~~n-~l~~l~~~~i--~m~~L~~ld~~~N~L~tlP~~lg~l~~L~~L  211 (565)
T KOG0472|consen  135 RLLDLEDLDATNNQISSLPEDMVNLSKLSKLDLEGN-KLKALPENHI--AMKRLKHLDCNSNLLETLPPELGGLESLELL  211 (565)
T ss_pred             HHhhhhhhhccccccccCchHHHHHHHHHHhhcccc-chhhCCHHHH--HHHHHHhcccchhhhhcCChhhcchhhhHHH
Confidence            0        0      00012233334444444444 3344433332  2444555544433                  


Q ss_pred             -------------CccccccEEEeeccCcccccccc---cccccEEEEEeCCCccchhhhhhhcccCceEEEeccccccc
Q 036454          143 -------------DVFANLEELTLSKCIFTTWRQAQ---FHKLKILHFISDGSDFFQVGLLQNIHNLEKLVLSTCEYKKI  206 (410)
Q Consensus       143 -------------~~l~~L~~L~i~~~~~~~~~~~~---l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~  206 (410)
                                   +....|++++++.|.+...+...   ++++..||++.+.....|.+ ++-+.+|.+|+++++.+..+
T Consensus       212 yL~~Nki~~lPef~gcs~L~Elh~g~N~i~~lpae~~~~L~~l~vLDLRdNklke~Pde-~clLrsL~rLDlSNN~is~L  290 (565)
T KOG0472|consen  212 YLRRNKIRFLPEFPGCSLLKELHVGENQIEMLPAEHLKHLNSLLVLDLRDNKLKEVPDE-ICLLRSLERLDLSNNDISSL  290 (565)
T ss_pred             HhhhcccccCCCCCccHHHHHHHhcccHHHhhHHHHhcccccceeeeccccccccCchH-HHHhhhhhhhcccCCccccC
Confidence                         22234455555555544444333   55666666666666666644 35566666777776665555


Q ss_pred             cccchhhccccccCcccEEEeCCcccc-----------------------cccc--cCCC-----------Ccccccccc
Q 036454          207 FSCEEVEEHAEGIAQIKSLKLKKLWLI-----------------------EEHL--WNPD-----------SKLDSFLQN  250 (410)
Q Consensus       207 ~~~~~~~~~~~~l~~L~~L~l~~c~~l-----------------------~~~~--~~~~-----------~~~~~~~~~  250 (410)
                      ..      ...++ .|+.|.+.|-+--                       +..+  +.++           .......-+
T Consensus       291 p~------sLgnl-hL~~L~leGNPlrTiRr~ii~~gT~~vLKyLrs~~~~dglS~se~~~e~~~t~~~~~~~~~~~~i~  363 (565)
T KOG0472|consen  291 PY------SLGNL-HLKFLALEGNPLRTIRREIISKGTQEVLKYLRSKIKDDGLSQSEGGTETAMTLPSESFPDIYAIIT  363 (565)
T ss_pred             Cc------ccccc-eeeehhhcCCchHHHHHHHHcccHHHHHHHHHHhhccCCCCCCcccccccCCCCCCcccchhhhhh
Confidence            44      23344 5666665552100                       0000  0000           000111223


Q ss_pred             ceEEEEecccccccccccCcc---ccCccCEEEEccc----------------------CCcccccchhhhhcCCCccEE
Q 036454          251 LEFLEVKKCALSLISLVPSSA---SFRNLTVLKVCNC----------------------WQLISLVTPQTAKTLVQLREL  305 (410)
Q Consensus       251 L~~L~l~~~~~~l~~l~~~~~---~~~~L~~L~l~~c----------------------~~l~~~~~~~~~~~l~~L~~L  305 (410)
                      .+.|++++-  .++.+|....   .-.-.+.++++..                      .+..+++ ...+..+++|..|
T Consensus       364 tkiL~~s~~--qlt~VPdEVfea~~~~~Vt~VnfskNqL~elPk~L~~lkelvT~l~lsnn~isfv-~~~l~~l~kLt~L  440 (565)
T KOG0472|consen  364 TKILDVSDK--QLTLVPDEVFEAAKSEIVTSVNFSKNQLCELPKRLVELKELVTDLVLSNNKISFV-PLELSQLQKLTFL  440 (565)
T ss_pred             hhhhccccc--ccccCCHHHHHHhhhcceEEEecccchHhhhhhhhHHHHHHHHHHHhhcCccccc-hHHHHhhhcceee
Confidence            333333332  2222221110   0000222222221                      0111111 1345667777777


Q ss_pred             EeccCcccchhccccCCCCccccccccceeecCcC----------------------cccceecCCCcccCCCCccEEEE
Q 036454          306 RVSECNRLEEIVANDGDADDEIVFSKLKWLFLESS----------------------ESITSFCSGNYAFSFPSLEDLIV  363 (410)
Q Consensus       306 ~l~~c~~l~~~~~~~~~~~~~~~~~~L~~L~l~~c----------------------~~l~~~~~~~~~~~~~~L~~L~l  363 (410)
                      ++++ .-+.++|...+.      +-.|+.|+++..                      .++..+... +..+|..|.+|++
T Consensus       441 ~L~N-N~Ln~LP~e~~~------lv~Lq~LnlS~NrFr~lP~~~y~lq~lEtllas~nqi~~vd~~-~l~nm~nL~tLDL  512 (565)
T KOG0472|consen  441 DLSN-NLLNDLPEEMGS------LVRLQTLNLSFNRFRMLPECLYELQTLETLLASNNQIGSVDPS-GLKNMRNLTTLDL  512 (565)
T ss_pred             eccc-chhhhcchhhhh------hhhhheecccccccccchHHHhhHHHHHHHHhccccccccChH-Hhhhhhhcceecc
Confidence            7776 456667766666      666777777652                      223333333 3457899999999


Q ss_pred             ecCCCCcccCCCCCCCCCcceeEeccc
Q 036454          364 ENCPKLNTFSAGVLKTPRLQAVQNWEL  390 (410)
Q Consensus       364 ~~c~~l~~~~~~~~~~~~L~~l~~~~~  390 (410)
                      .+ ..+.++|.++..+++|+++.+++|
T Consensus       513 ~n-Ndlq~IPp~LgnmtnL~hLeL~gN  538 (565)
T KOG0472|consen  513 QN-NDLQQIPPILGNMTNLRHLELDGN  538 (565)
T ss_pred             CC-CchhhCChhhccccceeEEEecCC
Confidence            65 588899999999999999999943

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=99.51  E-value=1.5e-13  Score=138.41  Aligned_cols=72  Identities=21%  Similarity=0.233  Sum_probs=41.5

Q ss_pred             CcccEEEeccCcCccccCchhHHhhhhccceEeeccccCcceEeccCCCCCCCcccccCCCccEEeeccCCCccccccCc
Q 036454           47 RNLVVVRIFDCQSLKNIFPTSIARSLLRLETLSIKDCGSVEEIVANDGRGNDAATKFIFPSLTFLRLRDLPDLTTFYSGM  126 (410)
Q Consensus        47 ~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~  126 (410)
                      .+-..|+++.+ .++.+|+ .+   .++|+.|++.++. ++.+|.            ..++|++|+++++ .++.+|.. 
T Consensus       201 ~~~~~LdLs~~-~LtsLP~-~l---~~~L~~L~L~~N~-Lt~LP~------------lp~~Lk~LdLs~N-~LtsLP~l-  260 (788)
T PRK15387        201 NGNAVLNVGES-GLTTLPD-CL---PAHITTLVIPDNN-LTSLPA------------LPPELRTLEVSGN-QLTSLPVL-  260 (788)
T ss_pred             CCCcEEEcCCC-CCCcCCc-ch---hcCCCEEEccCCc-CCCCCC------------CCCCCcEEEecCC-ccCcccCc-
Confidence            33556777776 5555544 22   2467777777764 666653            1367788888776 55555431 


Q ss_pred             ccCCCCCceEEEEccC
Q 036454          127 HILECPELRKLEVNHV  142 (410)
Q Consensus       127 ~~~~~~~L~~L~l~~~  142 (410)
                          .++|+.|++.++
T Consensus       261 ----p~sL~~L~Ls~N  272 (788)
T PRK15387        261 ----PPGLLELSIFSN  272 (788)
T ss_pred             ----ccccceeeccCC
Confidence                244555555444

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=99.49  E-value=2.7e-13  Score=136.56  Aligned_cols=248  Identities=21%  Similarity=0.104  Sum_probs=138.9

Q ss_pred             CCcEEEecCccccccccccCCccccccCcccEEEeccCcCccccCchhHHhhhhccceEeeccccCcceEeccCCCCCCC
Q 036454           20 QLRELHVFHLPKLTKLWNKDPQGKLIFRNLVVVRIFDCQSLKNIFPTSIARSLLRLETLSIKDCGSVEEIVANDGRGNDA   99 (410)
Q Consensus        20 ~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~   99 (410)
                      .-..|+++++ +++.+    |..+  .++|+.|++.++ .++.+|.     ..++|++|+++++. ++.+|.        
T Consensus       202 ~~~~LdLs~~-~LtsL----P~~l--~~~L~~L~L~~N-~Lt~LP~-----lp~~Lk~LdLs~N~-LtsLP~--------  259 (788)
T PRK15387        202 GNAVLNVGES-GLTTL----PDCL--PAHITTLVIPDN-NLTSLPA-----LPPELRTLEVSGNQ-LTSLPV--------  259 (788)
T ss_pred             CCcEEEcCCC-CCCcC----Ccch--hcCCCEEEccCC-cCCCCCC-----CCCCCcEEEecCCc-cCcccC--------
Confidence            3455666666 44443    5443  246777777776 5555532     24677777777764 666553        


Q ss_pred             cccccCCCccEEeeccCCCccccccCcccCCCCCceEEEEccC------CccccccEEEeeccCcccccccccccccEEE
Q 036454          100 ATKFIFPSLTFLRLRDLPDLTTFYSGMHILECPELRKLEVNHV------DVFANLEELTLSKCIFTTWRQAQFHKLKILH  173 (410)
Q Consensus       100 ~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~~------~~l~~L~~L~i~~~~~~~~~~~~l~~L~~L~  173 (410)
                          ..++|+.|+++++ .+..++.     ...+|+.|++.++      ..+++|+.|++++|.+..++. ...+|+.|+
T Consensus       260 ----lp~sL~~L~Ls~N-~L~~Lp~-----lp~~L~~L~Ls~N~Lt~LP~~p~~L~~LdLS~N~L~~Lp~-lp~~L~~L~  328 (788)
T PRK15387        260 ----LPPGLLELSIFSN-PLTHLPA-----LPSGLCKLWIFGNQLTSLPVLPPGLQELSVSDNQLASLPA-LPSELCKLW  328 (788)
T ss_pred             ----cccccceeeccCC-chhhhhh-----chhhcCEEECcCCccccccccccccceeECCCCccccCCC-Ccccccccc
Confidence                1256777777766 3444433     1244555555555      122567777777776655433 244566666


Q ss_pred             EEeCCCccchhhhhhhcccCceEEEeccccccccccchhhccccccCcccEEEeCCcccccccccCCCCccccccccceE
Q 036454          174 FISDGSDFFQVGLLQNIHNLEKLVLSTCEYKKIFSCEEVEEHAEGIAQIKSLKLKKLWLIEEHLWNPDSKLDSFLQNLEF  253 (410)
Q Consensus       174 l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~L~~  253 (410)
                      +..+.+..+|.    -.++|+.|++++|.+..++.         ..++|+.|++++. .+ ..+       ....++|+.
T Consensus       329 Ls~N~L~~LP~----lp~~Lq~LdLS~N~Ls~LP~---------lp~~L~~L~Ls~N-~L-~~L-------P~l~~~L~~  386 (788)
T PRK15387        329 AYNNQLTSLPT----LPSGLQELSVSDNQLASLPT---------LPSELYKLWAYNN-RL-TSL-------PALPSGLKE  386 (788)
T ss_pred             cccCccccccc----cccccceEecCCCccCCCCC---------CCcccceehhhcc-cc-ccC-------cccccccce
Confidence            65444444442    11467777777776665433         1246666666651 12 111       112346777


Q ss_pred             EEEecccccccccccCccccCccCEEEEcccCCcccccchhhhhcCCCccEEEeccCcccchhccccCCCCccccccccc
Q 036454          254 LEVKKCALSLISLVPSSASFRNLTVLKVCNCWQLISLVTPQTAKTLVQLRELRVSECNRLEEIVANDGDADDEIVFSKLK  333 (410)
Q Consensus       254 L~l~~~~~~l~~l~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~L~  333 (410)
                      |++++|  .++.+|.   .+++|+.|+++++ .+..++.     .+.+|+.|++++ +.++.+|..+..      +++|+
T Consensus       387 LdLs~N--~Lt~LP~---l~s~L~~LdLS~N-~LssIP~-----l~~~L~~L~Ls~-NqLt~LP~sl~~------L~~L~  448 (788)
T PRK15387        387 LIVSGN--RLTSLPV---LPSELKELMVSGN-RLTSLPM-----LPSGLLSLSVYR-NQLTRLPESLIH------LSSET  448 (788)
T ss_pred             EEecCC--cccCCCC---cccCCCEEEccCC-cCCCCCc-----chhhhhhhhhcc-CcccccChHHhh------ccCCC
Confidence            777776  4555543   2356777777665 3555541     234566677765 345666666665      67777


Q ss_pred             eeecCcC
Q 036454          334 WLFLESS  340 (410)
Q Consensus       334 ~L~l~~c  340 (410)
                      .|+++++
T Consensus       449 ~LdLs~N  455 (788)
T PRK15387        449 TVNLEGN  455 (788)
T ss_pred             eEECCCC
Confidence            7777764

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]

Probab=99.43  E-value=2e-15  Score=135.51  Aligned_cols=148  Identities=20%  Similarity=0.206  Sum_probs=102.2

Q ss_pred             CccccccCcccEEEeccCcCccccCchhHHhhhhccceEeeccccCcceEeccCCCCCCCcccccCCCccEEeeccCCCc
Q 036454           40 PQGKLIFRNLVVVRIFDCQSLKNIFPTSIARSLLRLETLSIKDCGSVEEIVANDGRGNDAATKFIFPSLTFLRLRDLPDL  119 (410)
Q Consensus        40 ~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l  119 (410)
                      |.+++++.++..+.+.++ .++.+++..+  ++..|+++|...+- ++.+|.         .++.+.+|+.|++..+ ++
T Consensus       153 p~~~~~~~~l~~l~~~~n-~l~~l~~~~i--~m~~L~~ld~~~N~-L~tlP~---------~lg~l~~L~~LyL~~N-ki  218 (565)
T KOG0472|consen  153 PEDMVNLSKLSKLDLEGN-KLKALPENHI--AMKRLKHLDCNSNL-LETLPP---------ELGGLESLELLYLRRN-KI  218 (565)
T ss_pred             chHHHHHHHHHHhhcccc-chhhCCHHHH--HHHHHHhcccchhh-hhcCCh---------hhcchhhhHHHHhhhc-cc
Confidence            333444444444444444 3444444332  25555555554433 445554         6777888888888876 66


Q ss_pred             cccccCcccCCCCCceEEEEccC----------CccccccEEEeeccCcccccccc--cccccEEEEEeCCCccchhhhh
Q 036454          120 TTFYSGMHILECPELRKLEVNHV----------DVFANLEELTLSKCIFTTWRQAQ--FHKLKILHFISDGSDFFQVGLL  187 (410)
Q Consensus       120 ~~~~~~~~~~~~~~L~~L~l~~~----------~~l~~L~~L~i~~~~~~~~~~~~--l~~L~~L~l~~~~~~~~~~~~l  187 (410)
                      ..+|..   ..+..|+++++..+          ..++++..|++.+|.....+...  +.+|.+||++++.++..|. .+
T Consensus       219 ~~lPef---~gcs~L~Elh~g~N~i~~lpae~~~~L~~l~vLDLRdNklke~Pde~clLrsL~rLDlSNN~is~Lp~-sL  294 (565)
T KOG0472|consen  219 RFLPEF---PGCSLLKELHVGENQIEMLPAEHLKHLNSLLVLDLRDNKLKEVPDEICLLRSLERLDLSNNDISSLPY-SL  294 (565)
T ss_pred             ccCCCC---CccHHHHHHHhcccHHHhhHHHHhcccccceeeeccccccccCchHHHHhhhhhhhcccCCccccCCc-cc
Confidence            666622   36788888888776          57789999999999999998887  8889999999999999885 46


Q ss_pred             hhcccCceEEEeccccccc
Q 036454          188 QNIHNLEKLVLSTCEYKKI  206 (410)
Q Consensus       188 ~~l~~L~~L~l~~~~~~~~  206 (410)
                      +++ .|+.|.+.|+.++.+
T Consensus       295 gnl-hL~~L~leGNPlrTi  312 (565)
T KOG0472|consen  295 GNL-HLKFLALEGNPLRTI  312 (565)
T ss_pred             ccc-eeeehhhcCCchHHH
Confidence            888 999999998865433

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]

Probab=99.41  E-value=1.1e-14  Score=143.36  Aligned_cols=236  Identities=20%  Similarity=0.248  Sum_probs=119.5

Q ss_pred             CCccEEeeccCCCccccccCcccCCCCCceEEEEccC---------CccccccEEEeeccCcccccccc--cccccEEEE
Q 036454          106 PSLTFLRLRDLPDLTTFYSGMHILECPELRKLEVNHV---------DVFANLEELTLSKCIFTTWRQAQ--FHKLKILHF  174 (410)
Q Consensus       106 ~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~~---------~~l~~L~~L~i~~~~~~~~~~~~--l~~L~~L~l  174 (410)
                      .+|++++++.. .+..+| .. ...+.+|..+++.++         ....+|+.+.+..|....+++..  +..|+.|++
T Consensus       241 ~nl~~~dis~n-~l~~lp-~w-i~~~~nle~l~~n~N~l~~lp~ri~~~~~L~~l~~~~nel~yip~~le~~~sL~tLdL  317 (1081)
T KOG0618|consen  241 LNLQYLDISHN-NLSNLP-EW-IGACANLEALNANHNRLVALPLRISRITSLVSLSAAYNELEYIPPFLEGLKSLRTLDL  317 (1081)
T ss_pred             ccceeeecchh-hhhcch-HH-HHhcccceEecccchhHHhhHHHHhhhhhHHHHHhhhhhhhhCCCcccccceeeeeee
Confidence            34555555554 444444 11 124555555555444         22345666666666666555543  666777777


Q ss_pred             EeCCCccchhhhhhhccc-CceEEEeccccccccccchhhccccccCcccEEEeCCcccccccccCCCCccccccccceE
Q 036454          175 ISDGSDFFQVGLLQNIHN-LEKLVLSTCEYKKIFSCEEVEEHAEGIAQIKSLKLKKLWLIEEHLWNPDSKLDSFLQNLEF  253 (410)
Q Consensus       175 ~~~~~~~~~~~~l~~l~~-L~~L~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~L~~  253 (410)
                      ..+.+..+|..++.-... |+.|..+.+.+.....+     ....++.|+.|.+.+     +.+.+..+..+...++|+.
T Consensus       318 ~~N~L~~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~-----~e~~~~~Lq~Lylan-----N~Ltd~c~p~l~~~~hLKV  387 (1081)
T KOG0618|consen  318 QSNNLPSLPDNFLAVLNASLNTLNVSSNKLSTLPSY-----EENNHAALQELYLAN-----NHLTDSCFPVLVNFKHLKV  387 (1081)
T ss_pred             hhccccccchHHHhhhhHHHHHHhhhhccccccccc-----cchhhHHHHHHHHhc-----Ccccccchhhhccccceee
Confidence            555555555544444433 55555555444433321     112235555555555     4444444455555666666


Q ss_pred             EEEeccccccccccc-CccccCccCEEEEcccCCcccccchhhhhcCCCccEEEeccCcccchhccccCCCCcccccccc
Q 036454          254 LEVKKCALSLISLVP-SSASFRNLTVLKVCNCWQLISLVTPQTAKTLVQLRELRVSECNRLEEIVANDGDADDEIVFSKL  332 (410)
Q Consensus       254 L~l~~~~~~l~~l~~-~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~L  332 (410)
                      |++++|  .+.++|. ....++.|+.|+++|. .++.++  .....+++|++|...+ +.+..+| .+.+      ++.|
T Consensus       388 LhLsyN--rL~~fpas~~~kle~LeeL~LSGN-kL~~Lp--~tva~~~~L~tL~ahs-N~l~~fP-e~~~------l~qL  454 (1081)
T KOG0618|consen  388 LHLSYN--RLNSFPASKLRKLEELEELNLSGN-KLTTLP--DTVANLGRLHTLRAHS-NQLLSFP-ELAQ------LPQL  454 (1081)
T ss_pred             eeeccc--ccccCCHHHHhchHHhHHHhcccc-hhhhhh--HHHHhhhhhHHHhhcC-Cceeech-hhhh------cCcc
Confidence            666666  4444442 2344555666666554 355554  3445555566555543 2344444 4444      5566


Q ss_pred             ceeecCcCcccceecCCCcccCCCCccEEEEecCCCC
Q 036454          333 KWLFLESSESITSFCSGNYAFSFPSLEDLIVENCPKL  369 (410)
Q Consensus       333 ~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~l~~c~~l  369 (410)
                      +.++++. ++++...... ....|.|++|++++..++
T Consensus       455 ~~lDlS~-N~L~~~~l~~-~~p~p~LkyLdlSGN~~l  489 (1081)
T KOG0618|consen  455 KVLDLSC-NNLSEVTLPE-ALPSPNLKYLDLSGNTRL  489 (1081)
T ss_pred             eEEeccc-chhhhhhhhh-hCCCcccceeeccCCccc
Confidence            6666653 4455433321 122355666666655543

>KOG4341 consensus F-box protein containing LRR [General function prediction only]

Probab=99.39  E-value=5.2e-15  Score=133.57  Aligned_cols=146  Identities=16%  Similarity=0.155  Sum_probs=69.0

Q ss_pred             cCcccEEEeCCcccccccccCCCCccccccccceEEEEeccccccccc--ccCccccCccCEEEEcccCCcccccchhhh
Q 036454          219 IAQIKSLKLKKLWLIEEHLWNPDSKLDSFLQNLEFLEVKKCALSLISL--VPSSASFRNLTVLKVCNCWQLISLVTPQTA  296 (410)
Q Consensus       219 l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~l~~l--~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~  296 (410)
                      +..|+.|..++|..+ ....  -......+++|+.|.+.+|. .+++.  .....+.+.|+.+++..|..+.+-...+..
T Consensus       293 c~~lq~l~~s~~t~~-~d~~--l~aLg~~~~~L~~l~l~~c~-~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls  368 (483)
T KOG4341|consen  293 CHALQVLCYSSCTDI-TDEV--LWALGQHCHNLQVLELSGCQ-QFSDRGFTMLGRNCPHLERLDLEECGLITDGTLASLS  368 (483)
T ss_pred             hhHhhhhcccCCCCC-chHH--HHHHhcCCCceEEEeccccc-hhhhhhhhhhhcCChhhhhhcccccceehhhhHhhhc
Confidence            445555555555443 2110  01123445566666666665 44332  112234555666666555433333222333


Q ss_pred             hcCCCccEEEeccCcccchhccccCCCCccccccccceeecCcCcccceecCCCcccCCCCccEEEEecCCCCc
Q 036454          297 KTLVQLRELRVSECNRLEEIVANDGDADDEIVFSKLKWLFLESSESITSFCSGNYAFSFPSLEDLIVENCPKLN  370 (410)
Q Consensus       297 ~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~l~~c~~l~  370 (410)
                      ..+|.|+.+.+++|..+++.-..... ........|..+++.+|+.+++.... ....|++|+.+++.+|..+.
T Consensus       369 ~~C~~lr~lslshce~itD~gi~~l~-~~~c~~~~l~~lEL~n~p~i~d~~Le-~l~~c~~Leri~l~~~q~vt  440 (483)
T KOG4341|consen  369 RNCPRLRVLSLSHCELITDEGIRHLS-SSSCSLEGLEVLELDNCPLITDATLE-HLSICRNLERIELIDCQDVT  440 (483)
T ss_pred             cCCchhccCChhhhhhhhhhhhhhhh-hccccccccceeeecCCCCchHHHHH-HHhhCcccceeeeechhhhh
Confidence            55666666666666555443000000 00011455666666666666654433 22346666666666665554

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=99.23  E-value=2.6e-11  Score=122.94  Aligned_cols=53  Identities=30%  Similarity=0.255  Sum_probs=23.7

Q ss_pred             ccceEEEEecccccccccccCccccCccCEEEEcccCCcccccchhhhhcCCCccEEEeccC
Q 036454          249 QNLEFLEVKKCALSLISLVPSSASFRNLTVLKVCNCWQLISLVTPQTAKTLVQLRELRVSEC  310 (410)
Q Consensus       249 ~~L~~L~l~~~~~~l~~l~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c  310 (410)
                      ++|+.|++++|  .++.+|..+  +++|+.|++++| ++..++.    ...++|++|++++|
T Consensus       325 ~sL~~L~Ls~N--~Lt~LP~~l--~~sL~~L~Ls~N-~L~~LP~----~lp~~L~~LdLs~N  377 (754)
T PRK15370        325 PGLKTLEAGEN--ALTSLPASL--PPELQVLDVSKN-QITVLPE----TLPPTITTLDVSRN  377 (754)
T ss_pred             ccceeccccCC--ccccCChhh--cCcccEEECCCC-CCCcCCh----hhcCCcCEEECCCC
Confidence            45555555555  344443321  245555555544 2443331    11245555555554

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=99.19  E-value=5e-11  Score=120.91  Aligned_cols=240  Identities=16%  Similarity=0.120  Sum_probs=148.3

Q ss_pred             cCCcEEEecCccccccccccCCccccccCcccEEEeccCcCccccCchhHHhhhhccceEeeccccCcceEeccCCCCCC
Q 036454           19 TQLRELHVFHLPKLTKLWNKDPQGKLIFRNLVVVRIFDCQSLKNIFPTSIARSLLRLETLSIKDCGSVEEIVANDGRGND   98 (410)
Q Consensus        19 ~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~   98 (410)
                      .+..+|++.+. +++.+    |..+  .++|+.|+++++ .++.++..    ..++|++|+++++. ++.+|.       
T Consensus       178 ~~~~~L~L~~~-~LtsL----P~~I--p~~L~~L~Ls~N-~LtsLP~~----l~~nL~~L~Ls~N~-LtsLP~-------  237 (754)
T PRK15370        178 NNKTELRLKIL-GLTTI----PACI--PEQITTLILDNN-ELKSLPEN----LQGNIKTLYANSNQ-LTSIPA-------  237 (754)
T ss_pred             cCceEEEeCCC-CcCcC----Cccc--ccCCcEEEecCC-CCCcCChh----hccCCCEEECCCCc-cccCCh-------
Confidence            45566666665 33333    3322  246777777766 55555332    23567777777664 655553       


Q ss_pred             CcccccCCCccEEeeccCCCccccccCcccCCCCCceEEEEccC--C-----ccccccEEEeeccCcccccccccccccE
Q 036454           99 AATKFIFPSLTFLRLRDLPDLTTFYSGMHILECPELRKLEVNHV--D-----VFANLEELTLSKCIFTTWRQAQFHKLKI  171 (410)
Q Consensus        99 ~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~~--~-----~l~~L~~L~i~~~~~~~~~~~~l~~L~~  171 (410)
                        .+  .++|+.|+++++ .+..+|...    ..+|+.|+++++  .     ..++|+.|++++|.+..++....++|+.
T Consensus       238 --~l--~~~L~~L~Ls~N-~L~~LP~~l----~s~L~~L~Ls~N~L~~LP~~l~~sL~~L~Ls~N~Lt~LP~~lp~sL~~  308 (754)
T PRK15370        238 --TL--PDTIQEMELSIN-RITELPERL----PSALQSLDLFHNKISCLPENLPEELRYLSVYDNSIRTLPAHLPSGITH  308 (754)
T ss_pred             --hh--hccccEEECcCC-ccCcCChhH----hCCCCEEECcCCccCccccccCCCCcEEECCCCccccCcccchhhHHH
Confidence              21  145677777766 444544322    135666666655  1     1246788888888776655433557888


Q ss_pred             EEEEeCCCccchhhhhhhcccCceEEEeccccccccccchhhccccccCcccEEEeCCcccccccccCCCCccccccccc
Q 036454          172 LHFISDGSDFFQVGLLQNIHNLEKLVLSTCEYKKIFSCEEVEEHAEGIAQIKSLKLKKLWLIEEHLWNPDSKLDSFLQNL  251 (410)
Q Consensus       172 L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~L  251 (410)
                      |++..+....+|...   .++|+.|.+++|.+..++.        ...++|+.|+++++. + ..+    +.  ...++|
T Consensus       309 L~Ls~N~Lt~LP~~l---~~sL~~L~Ls~N~Lt~LP~--------~l~~sL~~L~Ls~N~-L-~~L----P~--~lp~~L  369 (754)
T PRK15370        309 LNVQSNSLTALPETL---PPGLKTLEAGENALTSLPA--------SLPPELQVLDVSKNQ-I-TVL----PE--TLPPTI  369 (754)
T ss_pred             HHhcCCccccCCccc---cccceeccccCCccccCCh--------hhcCcccEEECCCCC-C-CcC----Ch--hhcCCc
Confidence            888666666655322   3689999999988776543        123789999999852 3 222    11  224689


Q ss_pred             eEEEEecccccccccccCccccCccCEEEEcccCCcccccch--hhhhcCCCccEEEeccCc
Q 036454          252 EFLEVKKCALSLISLVPSSASFRNLTVLKVCNCWQLISLVTP--QTAKTLVQLRELRVSECN  311 (410)
Q Consensus       252 ~~L~l~~~~~~l~~l~~~~~~~~~L~~L~l~~c~~l~~~~~~--~~~~~l~~L~~L~l~~c~  311 (410)
                      ++|++++|  .+..+|+.+  ..+|+.|+++++ ++..++..  ......+.+..|++.+.+
T Consensus       370 ~~LdLs~N--~Lt~LP~~l--~~sL~~LdLs~N-~L~~LP~sl~~~~~~~~~l~~L~L~~Np  426 (754)
T PRK15370        370 TTLDVSRN--ALTNLPENL--PAALQIMQASRN-NLVRLPESLPHFRGEGPQPTRIIVEYNP  426 (754)
T ss_pred             CEEECCCC--cCCCCCHhH--HHHHHHHhhccC-CcccCchhHHHHhhcCCCccEEEeeCCC
Confidence            99999999  577777643  347899999776 57766531  233456888999998754

>KOG4341 consensus F-box protein containing LRR [General function prediction only]

Probab=99.18  E-value=9.2e-13  Score=119.23  Aligned_cols=310  Identities=16%  Similarity=0.184  Sum_probs=185.6

Q ss_pred             cCCcEEEecCccccccccccCCccccccCcccEEEeccCcCccccCchhHHhhhhccceEeeccccCcceEeccCCCCCC
Q 036454           19 TQLRELHVFHLPKLTKLWNKDPQGKLIFRNLVVVRIFDCQSLKNIFPTSIARSLLRLETLSIKDCGSVEEIVANDGRGND   98 (410)
Q Consensus        19 ~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~   98 (410)
                      .-||.|.+.+|........+  .....+|++..|.+.+|.++++....++...+++|++|++..|.+++...-+.     
T Consensus       138 g~lk~LSlrG~r~v~~sslr--t~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~-----  210 (483)
T KOG4341|consen  138 GFLKELSLRGCRAVGDSSLR--TFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKY-----  210 (483)
T ss_pred             cccccccccccccCCcchhh--HHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHH-----
Confidence            35667777776543311111  11236677777777777766666666666677777777777666555432210     


Q ss_pred             CcccccCCCccEEeeccCCCccccccCcccCCCCCceEEEEccCCccccccEEEeeccCcccccccc-----cccccEEE
Q 036454           99 AATKFIFPSLTFLRLRDLPDLTTFYSGMHILECPELRKLEVNHVDVFANLEELTLSKCIFTTWRQAQ-----FHKLKILH  173 (410)
Q Consensus        99 ~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~l~~L~~L~i~~~~~~~~~~~~-----l~~L~~L~  173 (410)
                        -...+++|++|+++-|+.++.-......-++..++.+...+|              .-.......     ...+.+++
T Consensus       211 --la~gC~kL~~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kGC--------------~e~~le~l~~~~~~~~~i~~ln  274 (483)
T KOG4341|consen  211 --LAEGCRKLKYLNLSWCPQISGNGVQALQRGCKELEKLSLKGC--------------LELELEALLKAAAYCLEILKLN  274 (483)
T ss_pred             --HHHhhhhHHHhhhccCchhhcCcchHHhccchhhhhhhhccc--------------ccccHHHHHHHhccChHhhccc
Confidence              233456666666666655544111111112233333333333              222111100     33445555


Q ss_pred             E-EeCCCccchhhhh-hhcccCceEEEecccc-ccccccchhhccccccCcccEEEeCCcccccccccCCCCcccccccc
Q 036454          174 F-ISDGSDFFQVGLL-QNIHNLEKLVLSTCEY-KKIFSCEEVEEHAEGIAQIKSLKLKKLWLIEEHLWNPDSKLDSFLQN  250 (410)
Q Consensus       174 l-~~~~~~~~~~~~l-~~l~~L~~L~l~~~~~-~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~  250 (410)
                      + .+..+++.....+ ..+.+||.|..++|.. ....    -.......++|+.+-+++|..+ ...  +.......++.
T Consensus       275 l~~c~~lTD~~~~~i~~~c~~lq~l~~s~~t~~~d~~----l~aLg~~~~~L~~l~l~~c~~f-sd~--~ft~l~rn~~~  347 (483)
T KOG4341|consen  275 LQHCNQLTDEDLWLIACGCHALQVLCYSSCTDITDEV----LWALGQHCHNLQVLELSGCQQF-SDR--GFTMLGRNCPH  347 (483)
T ss_pred             hhhhccccchHHHHHhhhhhHhhhhcccCCCCCchHH----HHHHhcCCCceEEEeccccchh-hhh--hhhhhhcCChh
Confidence            5 4555555444444 4578899999888742 1110    0112345689999999999776 443  11233467889


Q ss_pred             ceEEEEecccccccc--cccCccccCccCEEEEcccCCcccccc---hhhhhcCCCccEEEeccCcccchhccccCCCCc
Q 036454          251 LEFLEVKKCALSLIS--LVPSSASFRNLTVLKVCNCWQLISLVT---PQTAKTLVQLRELRVSECNRLEEIVANDGDADD  325 (410)
Q Consensus       251 L~~L~l~~~~~~l~~--l~~~~~~~~~L~~L~l~~c~~l~~~~~---~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~  325 (410)
                      |+.+++..|. ...+  +..-..+++.|+.+.++.|..+++...   .........|+.+.+++|+.+++....     +
T Consensus       348 Le~l~~e~~~-~~~d~tL~sls~~C~~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le-----~  421 (483)
T KOG4341|consen  348 LERLDLEECG-LITDGTLASLSRNCPRLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDATLE-----H  421 (483)
T ss_pred             hhhhcccccc-eehhhhHhhhccCCchhccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHHHHH-----H
Confidence            9999999986 4432  333346788999999998876665521   123356778999999999998765432     2


Q ss_pred             cccccccceeecCcCcccceecCCCcccCCCCccEEEEe
Q 036454          326 EIVFSKLKWLFLESSESITSFCSGNYAFSFPSLEDLIVE  364 (410)
Q Consensus       326 ~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~l~  364 (410)
                      ...+++|+++++.+|..++.-++.....++|+++.....
T Consensus       422 l~~c~~Leri~l~~~q~vtk~~i~~~~~~lp~i~v~a~~  460 (483)
T KOG4341|consen  422 LSICRNLERIELIDCQDVTKEAISRFATHLPNIKVHAYF  460 (483)
T ss_pred             HhhCcccceeeeechhhhhhhhhHHHHhhCccceehhhc
Confidence            224899999999999999988887777888888877653

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]

Probab=99.17  E-value=2.5e-11  Score=124.97  Aligned_cols=214  Identities=19%  Similarity=0.244  Sum_probs=119.3

Q ss_pred             ccccCcccEEEeccCcCccccCchhHHhhhhccceEeeccccCcceEeccCCCCCCCcccccCCCccEEeeccCCCcccc
Q 036454           43 KLIFRNLVVVRIFDCQSLKNIFPTSIARSLLRLETLSIKDCGSVEEIVANDGRGNDAATKFIFPSLTFLRLRDLPDLTTF  122 (410)
Q Consensus        43 ~~~l~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~  122 (410)
                      +.++|.|++|++++|..+..+|. +| +.+-+|++|+++++. ++.+|.         .+..+.+|.+|++..+..+..+
T Consensus       567 f~~m~~LrVLDLs~~~~l~~LP~-~I-~~Li~LryL~L~~t~-I~~LP~---------~l~~Lk~L~~Lnl~~~~~l~~~  634 (889)
T KOG4658|consen  567 FRSLPLLRVLDLSGNSSLSKLPS-SI-GELVHLRYLDLSDTG-ISHLPS---------GLGNLKKLIYLNLEVTGRLESI  634 (889)
T ss_pred             HhhCcceEEEECCCCCccCcCCh-HH-hhhhhhhcccccCCC-ccccch---------HHHHHHhhheeccccccccccc
Confidence            45677777777777766665533 33 577777777777765 777776         6777777777777766555444


Q ss_pred             ccCcccCCCCCceEEEEccCCccccccEEEeeccCcccccc-cccccccEEEEEeCCCccchhhhhhhcccCceE----E
Q 036454          123 YSGMHILECPELRKLEVNHVDVFANLEELTLSKCIFTTWRQ-AQFHKLKILHFISDGSDFFQVGLLQNIHNLEKL----V  197 (410)
Q Consensus       123 ~~~~~~~~~~~L~~L~l~~~~~l~~L~~L~i~~~~~~~~~~-~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L----~  197 (410)
                      +. .. ..+++|++|.+...    .   ....   ...... ..+..|+.+.+.....  .....+..++.|.++    .
T Consensus       635 ~~-i~-~~L~~Lr~L~l~~s----~---~~~~---~~~l~el~~Le~L~~ls~~~~s~--~~~e~l~~~~~L~~~~~~l~  700 (889)
T KOG4658|consen  635 PG-IL-LELQSLRVLRLPRS----A---LSND---KLLLKELENLEHLENLSITISSV--LLLEDLLGMTRLRSLLQSLS  700 (889)
T ss_pred             cc-hh-hhcccccEEEeecc----c---cccc---hhhHHhhhcccchhhheeecchh--HhHhhhhhhHHHHHHhHhhh
Confidence            22 21 23566666665443    0   0000   000000 1144555555522221  111223344444433    3


Q ss_pred             EeccccccccccchhhccccccCcccEEEeCCcccccccccC-CCCcccc-ccccceEEEEecccccccccccCccccCc
Q 036454          198 LSTCEYKKIFSCEEVEEHAEGIAQIKSLKLKKLWLIEEHLWN-PDSKLDS-FLQNLEFLEVKKCALSLISLVPSSASFRN  275 (410)
Q Consensus       198 l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~-~~~~~~~-~~~~L~~L~l~~~~~~l~~l~~~~~~~~~  275 (410)
                      +.++.......      ....+.+|+.|.+.+|... +.... ....... .++++..+.+.+|. .+..+ .+....++
T Consensus       701 ~~~~~~~~~~~------~~~~l~~L~~L~i~~~~~~-e~~~~~~~~~~~~~~f~~l~~~~~~~~~-~~r~l-~~~~f~~~  771 (889)
T KOG4658|consen  701 IEGCSKRTLIS------SLGSLGNLEELSILDCGIS-EIVIEWEESLIVLLCFPNLSKVSILNCH-MLRDL-TWLLFAPH  771 (889)
T ss_pred             hcccccceeec------ccccccCcceEEEEcCCCc-hhhcccccccchhhhHHHHHHHHhhccc-ccccc-chhhccCc
Confidence            33333333333      4567899999999998775 22210 0011122 25677778888886 55443 44567899


Q ss_pred             cCEEEEcccCCccccc
Q 036454          276 LTVLKVCNCWQLISLV  291 (410)
Q Consensus       276 L~~L~l~~c~~l~~~~  291 (410)
                      |++|.+.+|..+..+.
T Consensus       772 L~~l~l~~~~~~e~~i  787 (889)
T KOG4658|consen  772 LTSLSLVSCRLLEDII  787 (889)
T ss_pred             ccEEEEecccccccCC
Confidence            9999999998777765

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]

Probab=99.16  E-value=3.6e-11  Score=123.77  Aligned_cols=305  Identities=22%  Similarity=0.262  Sum_probs=187.8

Q ss_pred             ccCCcEEEecCccccccccccCCccccccCcccEEEeccCcC-ccccCchhHHhhhhccceEeeccccCcceEeccCCCC
Q 036454           18 ATQLRELHVFHLPKLTKLWNKDPQGKLIFRNLVVVRIFDCQS-LKNIFPTSIARSLLRLETLSIKDCGSVEEIVANDGRG   96 (410)
Q Consensus        18 ~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~~~~-l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~   96 (410)
                      ....|++.+.+.. +..+ .+.+    ..++|++|-+..+.. +..+ +..++..+|.|+.||+++|..+.++|.     
T Consensus       522 ~~~~rr~s~~~~~-~~~~-~~~~----~~~~L~tLll~~n~~~l~~i-s~~ff~~m~~LrVLDLs~~~~l~~LP~-----  589 (889)
T KOG4658|consen  522 WNSVRRMSLMNNK-IEHI-AGSS----ENPKLRTLLLQRNSDWLLEI-SGEFFRSLPLLRVLDLSGNSSLSKLPS-----  589 (889)
T ss_pred             hhheeEEEEeccc-hhhc-cCCC----CCCccceEEEeecchhhhhc-CHHHHhhCcceEEEECCCCCccCcCCh-----
Confidence            4455666665542 2222 1112    556899999988753 4444 344457899999999999998999998     


Q ss_pred             CCCcccccCCCccEEeeccCCCccccccCcccCCCCCceEEEEccCCccccccEEEeeccCcccccccc---cccccEEE
Q 036454           97 NDAATKFIFPSLTFLRLRDLPDLTTFYSGMHILECPELRKLEVNHVDVFANLEELTLSKCIFTTWRQAQ---FHKLKILH  173 (410)
Q Consensus        97 ~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~l~~L~~L~i~~~~~~~~~~~~---l~~L~~L~  173 (410)
                          .++.+-+||+|+++++ .++.+|.+.  ..+..|.+|++..+              ......+..   +.+|++|.
T Consensus       590 ----~I~~Li~LryL~L~~t-~I~~LP~~l--~~Lk~L~~Lnl~~~--------------~~l~~~~~i~~~L~~Lr~L~  648 (889)
T KOG4658|consen  590 ----SIGELVHLRYLDLSDT-GISHLPSGL--GNLKKLIYLNLEVT--------------GRLESIPGILLELQSLRVLR  648 (889)
T ss_pred             ----HHhhhhhhhcccccCC-CccccchHH--HHHHhhheeccccc--------------cccccccchhhhcccccEEE
Confidence                8889999999999998 677777765  24455666655544              222222222   78899999


Q ss_pred             E--EeCCCccchhhhhhhcccCceEEEeccccccccccchhhccccccCccc----EEEeCCcccccccccCCCCccccc
Q 036454          174 F--ISDGSDFFQVGLLQNIHNLEKLVLSTCEYKKIFSCEEVEEHAEGIAQIK----SLKLKKLWLIEEHLWNPDSKLDSF  247 (410)
Q Consensus       174 l--~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~L~----~L~l~~c~~l~~~~~~~~~~~~~~  247 (410)
                      +  +....+......+.++.+|+.+.+..... .+..      ...++..|.    .+.+.+|..- ..     ......
T Consensus       649 l~~s~~~~~~~~l~el~~Le~L~~ls~~~~s~-~~~e------~l~~~~~L~~~~~~l~~~~~~~~-~~-----~~~~~~  715 (889)
T KOG4658|consen  649 LPRSALSNDKLLLKELENLEHLENLSITISSV-LLLE------DLLGMTRLRSLLQSLSIEGCSKR-TL-----ISSLGS  715 (889)
T ss_pred             eeccccccchhhHHhhhcccchhhheeecchh-HhHh------hhhhhHHHHHHhHhhhhcccccc-ee-----eccccc
Confidence            9  33344455555566667777776655443 1111      123333343    3333222211 11     234678


Q ss_pred             cccceEEEEecccccccccccC-----cc-ccCccCEEEEcccCCcccccchhhhhcCCCccEEEeccCcccchhccccC
Q 036454          248 LQNLEFLEVKKCALSLISLVPS-----SA-SFRNLTVLKVCNCWQLISLVTPQTAKTLVQLRELRVSECNRLEEIVANDG  321 (410)
Q Consensus       248 ~~~L~~L~l~~~~~~l~~l~~~-----~~-~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~  321 (410)
                      +.+|+.|.+.+|. ..+....+     .. .|+++..+.+..|.......   +..-.|+|+.|++..|..+++++....
T Consensus       716 l~~L~~L~i~~~~-~~e~~~~~~~~~~~~~~f~~l~~~~~~~~~~~r~l~---~~~f~~~L~~l~l~~~~~~e~~i~~~k  791 (889)
T KOG4658|consen  716 LGNLEELSILDCG-ISEIVIEWEESLIVLLCFPNLSKVSILNCHMLRDLT---WLLFAPHLTSLSLVSCRLLEDIIPKLK  791 (889)
T ss_pred             ccCcceEEEEcCC-CchhhcccccccchhhhHHHHHHHHhhccccccccc---hhhccCcccEEEEecccccccCCCHHH
Confidence            8999999999996 43322111     11 26678888888887777664   446778999999999998887765544


Q ss_pred             CCC----cccccccccee-ecCcCcccceecCCCcccCCCCccEEEEecCCCCcccCC
Q 036454          322 DAD----DEIVFSKLKWL-FLESSESITSFCSGNYAFSFPSLEDLIVENCPKLNTFSA  374 (410)
Q Consensus       322 ~~~----~~~~~~~L~~L-~l~~c~~l~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~  374 (410)
                      ...    ....|.++..+ .+.+.+.+..+....  ..++.|+.+.+..||++..+|.
T Consensus       792 ~~~~l~~~i~~f~~~~~l~~~~~l~~l~~i~~~~--l~~~~l~~~~ve~~p~l~~~P~  847 (889)
T KOG4658|consen  792 ALLELKELILPFNKLEGLRMLCSLGGLPQLYWLP--LSFLKLEELIVEECPKLGKLPL  847 (889)
T ss_pred             HhhhcccEEecccccccceeeecCCCCceeEecc--cCccchhheehhcCcccccCcc
Confidence            310    01224445555 244444444433322  1256689999999999887764

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=99.06  E-value=6.9e-11  Score=110.08  Aligned_cols=13  Identities=23%  Similarity=0.143  Sum_probs=8.4

Q ss_pred             ccCcccEEEeccC
Q 036454           45 IFRNLVVVRIFDC   57 (410)
Q Consensus        45 ~l~~L~~L~l~~~   57 (410)
                      .+++|++|++++|
T Consensus        21 ~l~~L~~l~l~~~   33 (319)
T cd00116          21 KLLCLQVLRLEGN   33 (319)
T ss_pred             HHhhccEEeecCC
Confidence            4555667777666

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=99.01  E-value=6.1e-11  Score=110.43  Aligned_cols=15  Identities=27%  Similarity=0.137  Sum_probs=10.3

Q ss_pred             cccCCCccEEeeccC
Q 036454          102 KFIFPSLTFLRLRDL  116 (410)
Q Consensus       102 ~~~l~~L~~L~l~~~  116 (410)
                      +..+.+|+.++++++
T Consensus        19 ~~~l~~L~~l~l~~~   33 (319)
T cd00116          19 LPKLLCLQVLRLEGN   33 (319)
T ss_pred             HHHHhhccEEeecCC
Confidence            344566888888877

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]

Probab=98.91  E-value=2.3e-10  Score=104.50  Aligned_cols=199  Identities=17%  Similarity=0.200  Sum_probs=122.0

Q ss_pred             ccCcccEEEeccCcCccccCchhHHhhhhccceEeecccc--CcceEeccCCCCCCCcccccCCCccEEeeccCCCcccc
Q 036454           45 IFRNLVVVRIFDCQSLKNIFPTSIARSLLRLETLSIKDCG--SVEEIVANDGRGNDAATKFIFPSLTFLRLRDLPDLTTF  122 (410)
Q Consensus        45 ~l~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~--~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~  122 (410)
                      .+++|+.+.+++| .+...+.......||+++.||++++-  ++..+..         .+.+||+|+.|+++.+ .+..+
T Consensus       119 n~kkL~~IsLdn~-~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~---------i~eqLp~Le~LNls~N-rl~~~  187 (505)
T KOG3207|consen  119 NLKKLREISLDNY-RVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLK---------IAEQLPSLENLNLSSN-RLSNF  187 (505)
T ss_pred             hHHhhhheeecCc-cccccchhhhhhhCCcceeecchhhhHHhHHHHHH---------HHHhcccchhcccccc-cccCC
Confidence            6777888888777 44433321334677888888887642  1222222         4456788888888776 44444


Q ss_pred             ccCcccCCCCCceEEEEccC-----------CccccccEEEeeccCcccccccc---cccccEEEEEeCCCccch-hhhh
Q 036454          123 YSGMHILECPELRKLEVNHV-----------DVFANLEELTLSKCIFTTWRQAQ---FHKLKILHFISDGSDFFQ-VGLL  187 (410)
Q Consensus       123 ~~~~~~~~~~~L~~L~l~~~-----------~~l~~L~~L~i~~~~~~~~~~~~---l~~L~~L~l~~~~~~~~~-~~~l  187 (410)
                      ........+++|+.|.++.|           ..+|+|+.|.+++|.........   +..|+.|+|.++...+++ ....
T Consensus       188 ~~s~~~~~l~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~  267 (505)
T KOG3207|consen  188 ISSNTTLLLSHLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFDQGYKV  267 (505)
T ss_pred             ccccchhhhhhhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCccccccccccc
Confidence            44333446778888888888           56788999988888532222211   788899999444433333 3456


Q ss_pred             hhcccCceEEEeccccccccccchhh-ccccccCcccEEEeCCcccccccc--cCCCCccccccccceEEEEeccc
Q 036454          188 QNIHNLEKLVLSTCEYKKIFSCEEVE-EHAEGIAQIKSLKLKKLWLIEEHL--WNPDSKLDSFLQNLEFLEVKKCA  260 (410)
Q Consensus       188 ~~l~~L~~L~l~~~~~~~~~~~~~~~-~~~~~l~~L~~L~l~~c~~l~~~~--~~~~~~~~~~~~~L~~L~l~~~~  260 (410)
                      ..+|.|+.|+++.|.+..+-.+++.. .....+++|++|++..     +.+  |.. ...+..+++|+.|.+..++
T Consensus       268 ~~l~~L~~Lnls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~-----N~I~~w~s-l~~l~~l~nlk~l~~~~n~  337 (505)
T KOG3207|consen  268 GTLPGLNQLNLSSTGIASIAEPDVESLDKTHTFPKLEYLNISE-----NNIRDWRS-LNHLRTLENLKHLRITLNY  337 (505)
T ss_pred             ccccchhhhhccccCcchhcCCCccchhhhcccccceeeeccc-----Cccccccc-cchhhccchhhhhhccccc
Confidence            78899999999988776653321111 1124568888888887     333  221 2234556677777766664

>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]

Probab=98.88  E-value=1e-10  Score=105.48  Aligned_cols=237  Identities=18%  Similarity=0.205  Sum_probs=132.5

Q ss_pred             cCCcEEEecCccccccccccCCcc-ccccCcccEEEeccCcCccccCchhHHhhhhccceEeeccccCcceEeccCCCCC
Q 036454           19 TQLRELHVFHLPKLTKLWNKDPQG-KLIFRNLVVVRIFDCQSLKNIFPTSIARSLLRLETLSIKDCGSVEEIVANDGRGN   97 (410)
Q Consensus        19 ~~L~~L~l~~~~~l~~~~~~~~~~-~~~l~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~   97 (410)
                      +....++++.. +++.+    |++ ++.+++||+|+|+++ +++.+.|..+ .++++|.+|-+-+.+++++++.+.|   
T Consensus        67 ~~tveirLdqN-~I~~i----P~~aF~~l~~LRrLdLS~N-~Is~I~p~AF-~GL~~l~~Lvlyg~NkI~~l~k~~F---  136 (498)
T KOG4237|consen   67 PETVEIRLDQN-QISSI----PPGAFKTLHRLRRLDLSKN-NISFIAPDAF-KGLASLLSLVLYGNNKITDLPKGAF---  136 (498)
T ss_pred             CcceEEEeccC-CcccC----Chhhccchhhhceeccccc-chhhcChHhh-hhhHhhhHHHhhcCCchhhhhhhHh---
Confidence            44556666665 45544    433 678888888888888 6777777765 4777777776666555888876433   


Q ss_pred             CCcccccCCCccEEeeccCCCccccccCcccCCCCCceEEEEccC----------CccccccEEEeeccCcc--------
Q 036454           98 DAATKFIFPSLTFLRLRDLPDLTTFYSGMHILECPELRKLEVNHV----------DVFANLEELTLSKCIFT--------  159 (410)
Q Consensus        98 ~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~~----------~~l~~L~~L~i~~~~~~--------  159 (410)
                           .++.+|+.|.+..+ ++..+....+. .++++..|.+++.          ..+..++.+++..|++.        
T Consensus       137 -----~gL~slqrLllNan-~i~Cir~~al~-dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np~icdCnL~wl  209 (498)
T KOG4237|consen  137 -----GGLSSLQRLLLNAN-HINCIRQDALR-DLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNPFICDCNLPWL  209 (498)
T ss_pred             -----hhHHHHHHHhcChh-hhcchhHHHHH-HhhhcchhcccchhhhhhccccccchhccchHhhhcCccccccccchh
Confidence                 33444444443332 11111111111 2333333333333          11122333333322210        


Q ss_pred             ----------------------------cccccc-cccccEE--EE--EeCCCccchhhhhhhcccCceEEEeccccccc
Q 036454          160 ----------------------------TWRQAQ-FHKLKIL--HF--ISDGSDFFQVGLLQNIHNLEKLVLSTCEYKKI  206 (410)
Q Consensus       160 ----------------------------~~~~~~-l~~L~~L--~l--~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~  206 (410)
                                                  .....+ ...++.+  .+  .+......|...+..+++|+.|++++++++.+
T Consensus       210 a~~~a~~~ietsgarc~~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~~i  289 (498)
T KOG4237|consen  210 ADDLAMNPIETSGARCVSPYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKITRI  289 (498)
T ss_pred             hhHHhhchhhcccceecchHHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCccchh
Confidence                                        000011 2223333  11  33345566666788889999999998888777


Q ss_pred             cccchhhccccccCcccEEEeCCcccccccccCCCCccccccccceEEEEeccccccccccc-CccccCccCEEEEccc
Q 036454          207 FSCEEVEEHAEGIAQIKSLKLKKLWLIEEHLWNPDSKLDSFLQNLEFLEVKKCALSLISLVP-SSASFRNLTVLKVCNC  284 (410)
Q Consensus       207 ~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~l~~l~~-~~~~~~~L~~L~l~~c  284 (410)
                      -.     ..+.++..++.|.+.+     +.+..-....+..+..|+.|++.+|  .++.+.+ .+.....|.+|++.+.
T Consensus       290 ~~-----~aFe~~a~l~eL~L~~-----N~l~~v~~~~f~~ls~L~tL~L~~N--~it~~~~~aF~~~~~l~~l~l~~N  356 (498)
T KOG4237|consen  290 ED-----GAFEGAAELQELYLTR-----NKLEFVSSGMFQGLSGLKTLSLYDN--QITTVAPGAFQTLFSLSTLNLLSN  356 (498)
T ss_pred             hh-----hhhcchhhhhhhhcCc-----chHHHHHHHhhhccccceeeeecCC--eeEEEecccccccceeeeeehccC
Confidence            33     3577788888888876     3332112345777888888888888  5655433 3445566777777653

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]

Probab=98.84  E-value=1.7e-10  Score=92.52  Aligned_cols=160  Identities=19%  Similarity=0.179  Sum_probs=107.4

Q ss_pred             cccccCCcEEEecCccccccccccCCccccccCcccEEEeccCcCccccCchhHHhhhhccceEeeccccCcceEeccCC
Q 036454           15 SGAATQLRELHVFHLPKLTKLWNKDPQGKLIFRNLVVVRIFDCQSLKNIFPTSIARSLLRLETLSIKDCGSVEEIVANDG   94 (410)
Q Consensus        15 ~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~   94 (410)
                      +-+++++.+|.+++. +++.+    |..|..+.+|+.|++.++ .++++|. ++ ..++.|+.|++.-+. +..+|.   
T Consensus        29 Lf~~s~ITrLtLSHN-Kl~~v----ppnia~l~nlevln~~nn-qie~lp~-~i-ssl~klr~lnvgmnr-l~~lpr---   96 (264)
T KOG0617|consen   29 LFNMSNITRLTLSHN-KLTVV----PPNIAELKNLEVLNLSNN-QIEELPT-SI-SSLPKLRILNVGMNR-LNILPR---   96 (264)
T ss_pred             ccchhhhhhhhcccC-ceeec----CCcHHHhhhhhhhhcccc-hhhhcCh-hh-hhchhhhheecchhh-hhcCcc---
Confidence            445667777777776 44444    777888888888888877 5666643 44 578888888886443 767776   


Q ss_pred             CCCCCcccccCCCccEEeeccCCCccccccCcccCCCCCceEEEEccCCccccccEEEeeccCcccccccc--cccccEE
Q 036454           95 RGNDAATKFIFPSLTFLRLRDLPDLTTFYSGMHILECPELRKLEVNHVDVFANLEELTLSKCIFTTWRQAQ--FHKLKIL  172 (410)
Q Consensus        95 ~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~l~~L~~L~i~~~~~~~~~~~~--l~~L~~L  172 (410)
                            .++.||.|+.||++++.--....++    ++-           .+++|+-|.+++|.+...++..  +.+|+.|
T Consensus        97 ------gfgs~p~levldltynnl~e~~lpg----nff-----------~m~tlralyl~dndfe~lp~dvg~lt~lqil  155 (264)
T KOG0617|consen   97 ------GFGSFPALEVLDLTYNNLNENSLPG----NFF-----------YMTTLRALYLGDNDFEILPPDVGKLTNLQIL  155 (264)
T ss_pred             ------ccCCCchhhhhhccccccccccCCc----chh-----------HHHHHHHHHhcCCCcccCChhhhhhcceeEE
Confidence                  7778888888888776321111111    111           1267777788888887777655  7777777


Q ss_pred             EEEeCCCccchhhhhhhcccCceEEEeccccccccc
Q 036454          173 HFISDGSDFFQVGLLQNIHNLEKLVLSTCEYKKIFS  208 (410)
Q Consensus       173 ~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~  208 (410)
                      .++.+..-..|. .++.++.|+.|++.++++..+++
T Consensus       156 ~lrdndll~lpk-eig~lt~lrelhiqgnrl~vlpp  190 (264)
T KOG0617|consen  156 SLRDNDLLSLPK-EIGDLTRLRELHIQGNRLTVLPP  190 (264)
T ss_pred             eeccCchhhCcH-HHHHHHHHHHHhcccceeeecCh
Confidence            776666666663 35777888888888877665544

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]

Probab=98.73  E-value=2.4e-10  Score=99.48  Aligned_cols=187  Identities=19%  Similarity=0.083  Sum_probs=127.1

Q ss_pred             ccccEEEEEeCCCccch-hhhhhhcccCceEEEeccccccccccchhhccccccCcccEEEeCCcccccccccCCCCccc
Q 036454          167 HKLKILHFISDGSDFFQ-VGLLQNIHNLEKLVLSTCEYKKIFSCEEVEEHAEGIAQIKSLKLKKLWLIEEHLWNPDSKLD  245 (410)
Q Consensus       167 ~~L~~L~l~~~~~~~~~-~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~  245 (410)
                      +.|+.||++...++... -..++++.+|+.|.+.+.+++.-+..     ....-.+|+.|+|+.|+-+ +..  +..-.+
T Consensus       185 sRlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~-----~iAkN~~L~~lnlsm~sG~-t~n--~~~ll~  256 (419)
T KOG2120|consen  185 SRLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVN-----TIAKNSNLVRLNLSMCSGF-TEN--ALQLLL  256 (419)
T ss_pred             hhhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHH-----HHhccccceeecccccccc-chh--HHHHHH
Confidence            45888888655554333 34568899999999999876543321     2344588999999999776 443  122357


Q ss_pred             cccccceEEEEecccccccccccCc--cccCccCEEEEcccC-CcccccchhhhhcCCCccEEEeccCcccchhc-cccC
Q 036454          246 SFLQNLEFLEVKKCALSLISLVPSS--ASFRNLTVLKVCNCW-QLISLVTPQTAKTLVQLRELRVSECNRLEEIV-ANDG  321 (410)
Q Consensus       246 ~~~~~L~~L~l~~~~~~l~~l~~~~--~~~~~L~~L~l~~c~-~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~-~~~~  321 (410)
                      ..|+.|++|++++|. ..+.....+  .--++|+.|+++||. ++..-........+|+|-+|+++.|..++.-. ..+.
T Consensus       257 ~scs~L~~LNlsWc~-l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~  335 (419)
T KOG2120|consen  257 SSCSRLDELNLSWCF-LFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFF  335 (419)
T ss_pred             HhhhhHhhcCchHhh-ccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHH
Confidence            889999999999997 544433221  224679999999983 33333333455789999999999987775532 2233


Q ss_pred             CCCccccccccceeecCcCcccceecCCCcccCCCCccEEEEecCCCC
Q 036454          322 DADDEIVFSKLKWLFLESSESITSFCSGNYAFSFPSLEDLIVENCPKL  369 (410)
Q Consensus       322 ~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~l~~c~~l  369 (410)
                      +      |+-|++|.++-|..+..-..- .+...|+|.+|++.+|-.-
T Consensus       336 k------f~~L~~lSlsRCY~i~p~~~~-~l~s~psl~yLdv~g~vsd  376 (419)
T KOG2120|consen  336 K------FNYLQHLSLSRCYDIIPETLL-ELNSKPSLVYLDVFGCVSD  376 (419)
T ss_pred             h------cchheeeehhhhcCCChHHee-eeccCcceEEEEeccccCc
Confidence            3      899999999999865432111 2345899999999988443

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]

Probab=98.73  E-value=3.2e-09  Score=97.19  Aligned_cols=186  Identities=20%  Similarity=0.226  Sum_probs=98.7

Q ss_pred             cccccEEEEEeCCCccc--hhhhhhhcccCceEEEeccccccccccchhhccccccCcccEEEeCCcccccccccCCCCc
Q 036454          166 FHKLKILHFISDGSDFF--QVGLLQNIHNLEKLVLSTCEYKKIFSCEEVEEHAEGIAQIKSLKLKKLWLIEEHLWNPDSK  243 (410)
Q Consensus       166 l~~L~~L~l~~~~~~~~--~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~  243 (410)
                      +++++.|+++.+....+  -..+..++|+|+.|+++.+.+..-...    ..-..++.|+.|.+++|.--...+    -.
T Consensus       145 ~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s----~~~~~l~~lK~L~l~~CGls~k~V----~~  216 (505)
T KOG3207|consen  145 LPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISS----NTTLLLSHLKQLVLNSCGLSWKDV----QW  216 (505)
T ss_pred             CCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccc----cchhhhhhhheEEeccCCCCHHHH----HH
Confidence            55555555533332221  123446778888888877764433220    001235777888887774220111    12


Q ss_pred             cccccccceEEEEecccccccccccCccccCccCEEEEcccCCcccccchhhhhcCCCccEEEeccCcccchhccccC-C
Q 036454          244 LDSFLQNLEFLEVKKCALSLISLVPSSASFRNLTVLKVCNCWQLISLVTPQTAKTLVQLRELRVSECNRLEEIVANDG-D  322 (410)
Q Consensus       244 ~~~~~~~L~~L~l~~~~~~l~~l~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~-~  322 (410)
                      ....+|+|+.|++..|. .+..-...-.-+..|+.|++++.+ +.+++.....+.+|.|+.|+++.| +++++..... .
T Consensus       217 ~~~~fPsl~~L~L~~N~-~~~~~~~~~~i~~~L~~LdLs~N~-li~~~~~~~~~~l~~L~~Lnls~t-gi~si~~~d~~s  293 (505)
T KOG3207|consen  217 ILLTFPSLEVLYLEANE-IILIKATSTKILQTLQELDLSNNN-LIDFDQGYKVGTLPGLNQLNLSST-GIASIAEPDVES  293 (505)
T ss_pred             HHHhCCcHHHhhhhccc-ccceecchhhhhhHHhhccccCCc-ccccccccccccccchhhhhcccc-CcchhcCCCccc
Confidence            35567788888777774 332222223445667777876654 444544345577777777777764 4443322111 1


Q ss_pred             CCccccccccceeecCcCcccceecCCCcccCCCCccEEEE
Q 036454          323 ADDEIVFSKLKWLFLESSESITSFCSGNYAFSFPSLEDLIV  363 (410)
Q Consensus       323 ~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~l  363 (410)
                      .++.+.|++|+.|.+... ++.++..-.....+++|+.+.+
T Consensus       294 ~~kt~~f~kL~~L~i~~N-~I~~w~sl~~l~~l~nlk~l~~  333 (505)
T KOG3207|consen  294 LDKTHTFPKLEYLNISEN-NIRDWRSLNHLRTLENLKHLRI  333 (505)
T ss_pred             hhhhcccccceeeecccC-ccccccccchhhccchhhhhhc
Confidence            235566788888877763 3433332222234556666654

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]

Probab=98.71  E-value=1e-09  Score=95.58  Aligned_cols=215  Identities=18%  Similarity=0.144  Sum_probs=126.2

Q ss_pred             CcccccccCccccccccccCCcE--EEecCccccccccccCCc---ccc-ccCcccEEEeccCcCccccCchhHHhhhhc
Q 036454            1 EIFDLQEVNSEETHSGAATQLRE--LHVFHLPKLTKLWNKDPQ---GKL-IFRNLVVVRIFDCQSLKNIFPTSIARSLLR   74 (410)
Q Consensus         1 ~~~~~~~~~~~~~~~~~~~~L~~--L~l~~~~~l~~~~~~~~~---~~~-~l~~L~~L~l~~~~~l~~~~~~~~~~~l~~   74 (410)
                      +++|+++-++.+..++.+.+=.+  +++...      ....|.   .+. +=..|++++++.. .++.-....+...|.+
T Consensus       139 ~~lDl~~r~i~p~~l~~l~~rgV~v~Rlar~------~~~~prlae~~~~frsRlq~lDLS~s-~it~stl~~iLs~C~k  211 (419)
T KOG2120|consen  139 QTLDLTGRNIHPDVLGRLLSRGVIVFRLARS------FMDQPRLAEHFSPFRSRLQHLDLSNS-VITVSTLHGILSQCSK  211 (419)
T ss_pred             eeeccCCCccChhHHHHHHhCCeEEEEcchh------hhcCchhhhhhhhhhhhhHHhhcchh-heeHHHHHHHHHHHHh
Confidence            35677777777777777754444  444322      111121   111 2245889999876 5554445566688999


Q ss_pred             cceEeeccccCcce-EeccCCCCCCCcccccCCCccEEeeccCCCccccccCcccCCCCCceEEEEccC-----------
Q 036454           75 LETLSIKDCGSVEE-IVANDGRGNDAATKFIFPSLTFLRLRDLPDLTTFYSGMHILECPELRKLEVNHV-----------  142 (410)
Q Consensus        75 L~~L~l~~~~~l~~-~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~~-----------  142 (410)
                      |+.|.+.|.. +.+ +..         .+..-..|+.++++.|..+++.....+-..+..|.+|+++.|           
T Consensus       212 Lk~lSlEg~~-LdD~I~~---------~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~LNlsWc~l~~~~Vtv~V  281 (419)
T KOG2120|consen  212 LKNLSLEGLR-LDDPIVN---------TIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDELNLSWCFLFTEKVTVAV  281 (419)
T ss_pred             hhhccccccc-cCcHHHH---------HHhccccceeeccccccccchhHHHHHHHhhhhHhhcCchHhhccchhhhHHH
Confidence            9999998876 432 222         445557899999999988877654443346778888888888           


Q ss_pred             -CccccccEEEeeccCcccccccccccccEEEEEeCCCccchhhhh-hhcccCceEEEeccc-cccccccchhhcccccc
Q 036454          143 -DVFANLEELTLSKCIFTTWRQAQFHKLKILHFISDGSDFFQVGLL-QNIHNLEKLVLSTCE-YKKIFSCEEVEEHAEGI  219 (410)
Q Consensus       143 -~~l~~L~~L~i~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l-~~l~~L~~L~l~~~~-~~~~~~~~~~~~~~~~l  219 (410)
                       ..-++|..|+++|+.-.-.                   ......+ ..+|+|..|++++|- ++.  .   ....+..+
T Consensus       282 ~hise~l~~LNlsG~rrnl~-------------------~sh~~tL~~rcp~l~~LDLSD~v~l~~--~---~~~~~~kf  337 (419)
T KOG2120|consen  282 AHISETLTQLNLSGYRRNLQ-------------------KSHLSTLVRRCPNLVHLDLSDSVMLKN--D---CFQEFFKF  337 (419)
T ss_pred             hhhchhhhhhhhhhhHhhhh-------------------hhHHHHHHHhCCceeeeccccccccCc--h---HHHHHHhc
Confidence             2224556666665443211                   1111222 456777777777663 211  0   11124456


Q ss_pred             CcccEEEeCCcccccccccCCCCccccccccceEEEEeccc
Q 036454          220 AQIKSLKLKKLWLIEEHLWNPDSKLDSFLQNLEFLEVKKCA  260 (410)
Q Consensus       220 ~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~L~~L~l~~~~  260 (410)
                      +.|++|.++.|..+. .-   -.-.+...|.|.+|++.+|-
T Consensus       338 ~~L~~lSlsRCY~i~-p~---~~~~l~s~psl~yLdv~g~v  374 (419)
T KOG2120|consen  338 NYLQHLSLSRCYDII-PE---TLLELNSKPSLVYLDVFGCV  374 (419)
T ss_pred             chheeeehhhhcCCC-hH---HeeeeccCcceEEEEecccc
Confidence            777777777776551 10   01235567788888888773

>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]

Probab=98.68  E-value=1e-09  Score=99.06  Aligned_cols=70  Identities=21%  Similarity=0.244  Sum_probs=42.8

Q ss_pred             CcccEEEeccCcCccccCchhHHhhhhccceEeeccccCcceEeccCCCCCCCcccccCCCccEEeeccCCCccccccCc
Q 036454           47 RNLVVVRIFDCQSLKNIFPTSIARSLLRLETLSIKDCGSVEEIVANDGRGNDAATKFIFPSLTFLRLRDLPDLTTFYSGM  126 (410)
Q Consensus        47 ~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~  126 (410)
                      +.-..|+|..+ .++.+|+..+ +.+++|++||++.+. +..|.++        .+.++++|-.|.+.+..++++++.+.
T Consensus        67 ~~tveirLdqN-~I~~iP~~aF-~~l~~LRrLdLS~N~-Is~I~p~--------AF~GL~~l~~Lvlyg~NkI~~l~k~~  135 (498)
T KOG4237|consen   67 PETVEIRLDQN-QISSIPPGAF-KTLHRLRRLDLSKNN-ISFIAPD--------AFKGLASLLSLVLYGNNKITDLPKGA  135 (498)
T ss_pred             CcceEEEeccC-CcccCChhhc-cchhhhceecccccc-hhhcChH--------hhhhhHhhhHHHhhcCCchhhhhhhH
Confidence            34556666666 5666655544 577777777777665 6655541        44556666666666655666666654


Q ss_pred             c
Q 036454          127 H  127 (410)
Q Consensus       127 ~  127 (410)
                      +
T Consensus       136 F  136 (498)
T KOG4237|consen  136 F  136 (498)
T ss_pred             h
Confidence            4

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]

Probab=98.67  E-value=7.2e-10  Score=88.94  Aligned_cols=141  Identities=21%  Similarity=0.289  Sum_probs=90.7

Q ss_pred             ccccccCcccEEEeccCcCccccCchhHHhhhhccceEeeccccCcceEeccCCCCCCCcccccCCCccEEeeccCCCcc
Q 036454           41 QGKLIFRNLVVVRIFDCQSLKNIFPTSIARSLLRLETLSIKDCGSVEEIVANDGRGNDAATKFIFPSLTFLRLRDLPDLT  120 (410)
Q Consensus        41 ~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~  120 (410)
                      .++..+.++.+|.++++ .+...+|. | ..+.+|+.|++.++. ++++|.         .+..+++|+.|+++-+ .+.
T Consensus        27 ~gLf~~s~ITrLtLSHN-Kl~~vppn-i-a~l~nlevln~~nnq-ie~lp~---------~issl~klr~lnvgmn-rl~   92 (264)
T KOG0617|consen   27 PGLFNMSNITRLTLSHN-KLTVVPPN-I-AELKNLEVLNLSNNQ-IEELPT---------SISSLPKLRILNVGMN-RLN   92 (264)
T ss_pred             ccccchhhhhhhhcccC-ceeecCCc-H-HHhhhhhhhhcccch-hhhcCh---------hhhhchhhhheecchh-hhh
Confidence            34457788899999988 66666554 4 489999999999876 999998         8889999999998754 666


Q ss_pred             ccccCcccCCCCCceEEEEccCCccccccEEEeeccCcccccccccccccEEEEEeCCCccchhhhhhhcccCceEEEec
Q 036454          121 TFYSGMHILECPELRKLEVNHVDVFANLEELTLSKCIFTTWRQAQFHKLKILHFISDGSDFFQVGLLQNIHNLEKLVLST  200 (410)
Q Consensus       121 ~~~~~~~~~~~~~L~~L~l~~~~~l~~L~~L~i~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~  200 (410)
                      ..|.+.  +.+|.|+.|++++.    +|.+=.+.+|.+.      +..|+.|++..+....+|. .++++++||.|.+.+
T Consensus        93 ~lprgf--gs~p~levldltyn----nl~e~~lpgnff~------m~tlralyl~dndfe~lp~-dvg~lt~lqil~lrd  159 (264)
T KOG0617|consen   93 ILPRGF--GSFPALEVLDLTYN----NLNENSLPGNFFY------MTTLRALYLGDNDFEILPP-DVGKLTNLQILSLRD  159 (264)
T ss_pred             cCcccc--CCCchhhhhhcccc----ccccccCCcchhH------HHHHHHHHhcCCCcccCCh-hhhhhcceeEEeecc
Confidence            666665  34444444444332    2222222221111      5566666765555555553 346667777776666


Q ss_pred             cccccccc
Q 036454          201 CEYKKIFS  208 (410)
Q Consensus       201 ~~~~~~~~  208 (410)
                      +.+..++.
T Consensus       160 ndll~lpk  167 (264)
T KOG0617|consen  160 NDLLSLPK  167 (264)
T ss_pred             CchhhCcH
Confidence            55444433

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]

Probab=98.56  E-value=3.3e-08  Score=86.48  Aligned_cols=127  Identities=17%  Similarity=0.173  Sum_probs=68.6

Q ss_pred             ccccEEEEEeCCCccchhhhhhhcccCceEEEeccccccccccchhhccccccCcccEEEeCCcccccccccCCCCcccc
Q 036454          167 HKLKILHFISDGSDFFQVGLLQNIHNLEKLVLSTCEYKKIFSCEEVEEHAEGIAQIKSLKLKKLWLIEEHLWNPDSKLDS  246 (410)
Q Consensus       167 ~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~  246 (410)
                      ..|++++++.+.+..+. +.+.-.|.++.|+++.+++..+..       ...+++|+.|++++     +.+.. ...+-.
T Consensus       284 q~LtelDLS~N~I~~iD-ESvKL~Pkir~L~lS~N~i~~v~n-------La~L~~L~~LDLS~-----N~Ls~-~~Gwh~  349 (490)
T KOG1259|consen  284 QELTELDLSGNLITQID-ESVKLAPKLRRLILSQNRIRTVQN-------LAELPQLQLLDLSG-----NLLAE-CVGWHL  349 (490)
T ss_pred             hhhhhccccccchhhhh-hhhhhccceeEEeccccceeeehh-------hhhcccceEeeccc-----chhHh-hhhhHh
Confidence            34445555444433333 223344666666666666555533       44556666666665     22210 012334


Q ss_pred             ccccceEEEEecccccccccccCccccCccCEEEEcccCCcccccchhhhhcCCCccEEEeccCc
Q 036454          247 FLQNLEFLEVKKCALSLISLVPSSASFRNLTVLKVCNCWQLISLVTPQTAKTLVQLRELRVSECN  311 (410)
Q Consensus       247 ~~~~L~~L~l~~~~~~l~~l~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~  311 (410)
                      .+-|.++|.+.+|  .+.++. .++.+.+|.+|++++. +++.+..-..++.+|+|+.+.+.+++
T Consensus       350 KLGNIKtL~La~N--~iE~LS-GL~KLYSLvnLDl~~N-~Ie~ldeV~~IG~LPCLE~l~L~~NP  410 (490)
T KOG1259|consen  350 KLGNIKTLKLAQN--KIETLS-GLRKLYSLVNLDLSSN-QIEELDEVNHIGNLPCLETLRLTGNP  410 (490)
T ss_pred             hhcCEeeeehhhh--hHhhhh-hhHhhhhheecccccc-chhhHHHhcccccccHHHHHhhcCCC
Confidence            4556666777666  444442 2455666777777654 45555444456777777777777643

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=98.38  E-value=1.5e-07  Score=78.27  Aligned_cols=132  Identities=17%  Similarity=0.198  Sum_probs=41.8

Q ss_pred             cccccCCcEEEecCccccccccccCCcccc-ccCcccEEEeccCcCccccCchhHHhhhhccceEeeccccCcceEeccC
Q 036454           15 SGAATQLRELHVFHLPKLTKLWNKDPQGKL-IFRNLVVVRIFDCQSLKNIFPTSIARSLLRLETLSIKDCGSVEEIVAND   93 (410)
Q Consensus        15 ~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~-~l~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~   93 (410)
                      ..+...+++|++.++ .++.+     +.++ .+.+|+.|++++| .++.+...   ..+++|++|+++++. ++.+..  
T Consensus        15 ~~n~~~~~~L~L~~n-~I~~I-----e~L~~~l~~L~~L~Ls~N-~I~~l~~l---~~L~~L~~L~L~~N~-I~~i~~--   81 (175)
T PF14580_consen   15 YNNPVKLRELNLRGN-QISTI-----ENLGATLDKLEVLDLSNN-QITKLEGL---PGLPRLKTLDLSNNR-ISSISE--   81 (175)
T ss_dssp             ---------------------------S--TT-TT--EEE-TTS---S--TT-------TT--EEE--SS----S-CH--
T ss_pred             ccccccccccccccc-ccccc-----cchhhhhcCCCEEECCCC-CCccccCc---cChhhhhhcccCCCC-CCcccc--
Confidence            344456788888876 33332     2333 4678888888887 55555443   567888888888775 666543  


Q ss_pred             CCCCCCccc-ccCCCccEEeeccCCCccccccCcccCCCCCceEEEEccCCccccccEEEeeccCcccccccccccccEE
Q 036454           94 GRGNDAATK-FIFPSLTFLRLRDLPDLTTFYSGMHILECPELRKLEVNHVDVFANLEELTLSKCIFTTWRQAQFHKLKIL  172 (410)
Q Consensus        94 ~~~~~~~~~-~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~l~~L~~L~i~~~~~~~~~~~~l~~L~~L  172 (410)
                             .+ ..+++|+.|.++++ .+.++...      ..|        ..+++|+.|++.+|+.....          
T Consensus        82 -------~l~~~lp~L~~L~L~~N-~I~~l~~l------~~L--------~~l~~L~~L~L~~NPv~~~~----------  129 (175)
T PF14580_consen   82 -------GLDKNLPNLQELYLSNN-KISDLNEL------EPL--------SSLPKLRVLSLEGNPVCEKK----------  129 (175)
T ss_dssp             -------HHHHH-TT--EEE-TTS----SCCCC------GGG--------GG-TT--EEE-TT-GGGGST----------
T ss_pred             -------chHHhCCcCCEEECcCC-cCCChHHh------HHH--------HcCCCcceeeccCCcccchh----------
Confidence                   23 35778888888776 44433211      111        12256666666666654221          


Q ss_pred             EEEeCCCccchhhhhhhcccCceEEEe
Q 036454          173 HFISDGSDFFQVGLLQNIHNLEKLVLS  199 (410)
Q Consensus       173 ~l~~~~~~~~~~~~l~~l~~L~~L~l~  199 (410)
                              .+....+..+|+|+.|+-.
T Consensus       130 --------~YR~~vi~~lP~Lk~LD~~  148 (175)
T PF14580_consen  130 --------NYRLFVIYKLPSLKVLDGQ  148 (175)
T ss_dssp             --------THHHHHHHH-TT-SEETTE
T ss_pred             --------hHHHHHHHHcChhheeCCE
Confidence                    2223445677777777654

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=98.34  E-value=3.3e-07  Score=76.24  Aligned_cols=63  Identities=21%  Similarity=0.214  Sum_probs=16.8

Q ss_pred             ccccccceEEEEecccccccccccCc-cccCccCEEEEcccCCcccccchhhhhcCCCccEEEeccC
Q 036454          245 DSFLQNLEFLEVKKCALSLISLVPSS-ASFRNLTVLKVCNCWQLISLVTPQTAKTLVQLRELRVSEC  310 (410)
Q Consensus       245 ~~~~~~L~~L~l~~~~~~l~~l~~~~-~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c  310 (410)
                      ++.++.|++|++++|  .++++.+.+ ..+++|++|.+++. ++.++........+|+|+.|++.++
T Consensus        60 l~~L~~L~~L~L~~N--~I~~i~~~l~~~lp~L~~L~L~~N-~I~~l~~l~~L~~l~~L~~L~L~~N  123 (175)
T PF14580_consen   60 LPGLPRLKTLDLSNN--RISSISEGLDKNLPNLQELYLSNN-KISDLNELEPLSSLPKLRVLSLEGN  123 (175)
T ss_dssp             ----TT--EEE--SS-----S-CHHHHHH-TT--EEE-TTS----SCCCCGGGGG-TT--EEE-TT-
T ss_pred             ccChhhhhhcccCCC--CCCccccchHHhCCcCCEEECcCC-cCCChHHhHHHHcCCCcceeeccCC
Confidence            444555555555555  344332222 23455555555433 2333332223344555555555543

>PRK15386 type III secretion protein GogB; Provisional

Probab=98.27  E-value=4.8e-06  Score=77.95  Aligned_cols=140  Identities=16%  Similarity=0.176  Sum_probs=88.7

Q ss_pred             hhhcccCceEEEeccccccccccchhhccccccCcccEEEeCCcccccccccCCCCccccccccceEEEEeccccccccc
Q 036454          187 LQNIHNLEKLVLSTCEYKKIFSCEEVEEHAEGIAQIKSLKLKKLWLIEEHLWNPDSKLDSFLQNLEFLEVKKCALSLISL  266 (410)
Q Consensus       187 l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~l~~l  266 (410)
                      +..+++++.|++++|.+..++.         -.++|++|.+++|.++ ..+.    .  ...++|++|.+++|. .+..+
T Consensus        48 ~~~~~~l~~L~Is~c~L~sLP~---------LP~sLtsL~Lsnc~nL-tsLP----~--~LP~nLe~L~Ls~Cs-~L~sL  110 (426)
T PRK15386         48 IEEARASGRLYIKDCDIESLPV---------LPNELTEITIENCNNL-TTLP----G--SIPEGLEKLTVCHCP-EISGL  110 (426)
T ss_pred             HHHhcCCCEEEeCCCCCcccCC---------CCCCCcEEEccCCCCc-ccCC----c--hhhhhhhheEccCcc-ccccc
Confidence            4557899999999997766643         2357999999999888 5552    1  124689999999997 66555


Q ss_pred             ccCccccCccCEEEEcccCCcccccchhhhhcCCCccEEEeccCcccchhccccCCCCccccccccceeecCcCccccee
Q 036454          267 VPSSASFRNLTVLKVCNCWQLISLVTPQTAKTLVQLRELRVSECNRLEEIVANDGDADDEIVFSKLKWLFLESSESITSF  346 (410)
Q Consensus       267 ~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~  346 (410)
                      |      ++|+.|++. +.....+.     .-.++|++|.+.++.........      ....++|+.|.+.+|..+. +
T Consensus       111 P------~sLe~L~L~-~n~~~~L~-----~LPssLk~L~I~~~n~~~~~~lp------~~LPsSLk~L~Is~c~~i~-L  171 (426)
T PRK15386        111 P------ESVRSLEIK-GSATDSIK-----NVPNGLTSLSINSYNPENQARID------NLISPSLKTLSLTGCSNII-L  171 (426)
T ss_pred             c------cccceEEeC-CCCCcccc-----cCcchHhheeccccccccccccc------cccCCcccEEEecCCCccc-C
Confidence            4      457788875 33333222     23357888888543221111000      0124789999999988553 2


Q ss_pred             cCCCcccCCCCccEEEEecC
Q 036454          347 CSGNYAFSFPSLEDLIVENC  366 (410)
Q Consensus       347 ~~~~~~~~~~~L~~L~l~~c  366 (410)
                      +...    -++|+.|.+..+
T Consensus       172 P~~L----P~SLk~L~ls~n  187 (426)
T PRK15386        172 PEKL----PESLQSITLHIE  187 (426)
T ss_pred             cccc----cccCcEEEeccc
Confidence            2221    258999998765

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]

Probab=98.24  E-value=2.8e-07  Score=80.79  Aligned_cols=128  Identities=21%  Similarity=0.234  Sum_probs=88.7

Q ss_pred             hhcccCceEEEeccccccccccchhhccccccCcccEEEeCCcccccccccCCCCccccccccceEEEEecccccccccc
Q 036454          188 QNIHNLEKLVLSTCEYKKIFSCEEVEEHAEGIAQIKSLKLKKLWLIEEHLWNPDSKLDSFLQNLEFLEVKKCALSLISLV  267 (410)
Q Consensus       188 ~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~l~~l~  267 (410)
                      ...+.|+.++++++.+..+..      +..-.|.++.|+++.     +.+..  ...+..+++|+.|++++|  .++.+.
T Consensus       281 dTWq~LtelDLS~N~I~~iDE------SvKL~Pkir~L~lS~-----N~i~~--v~nLa~L~~L~~LDLS~N--~Ls~~~  345 (490)
T KOG1259|consen  281 DTWQELTELDLSGNLITQIDE------SVKLAPKLRRLILSQ-----NRIRT--VQNLAELPQLQLLDLSGN--LLAECV  345 (490)
T ss_pred             chHhhhhhccccccchhhhhh------hhhhccceeEEeccc-----cceee--ehhhhhcccceEeecccc--hhHhhh
Confidence            445789999999988777655      344468899999988     44421  123677889999999998  576666


Q ss_pred             cCccccCccCEEEEcccCCcccccchhhhhcCCCccEEEeccCcccch--hccccCCCCccccccccceeecCcCc
Q 036454          268 PSSASFRNLTVLKVCNCWQLISLVTPQTAKTLVQLRELRVSECNRLEE--IVANDGDADDEIVFSKLKWLFLESSE  341 (410)
Q Consensus       268 ~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~--~~~~~~~~~~~~~~~~L~~L~l~~c~  341 (410)
                      .|-..+.++++|.+++. .+.++   ++.+.+-+|..|+++++ .++.  -...+|.      +|.|+.+.+.+.|
T Consensus       346 Gwh~KLGNIKtL~La~N-~iE~L---SGL~KLYSLvnLDl~~N-~Ie~ldeV~~IG~------LPCLE~l~L~~NP  410 (490)
T KOG1259|consen  346 GWHLKLGNIKTLKLAQN-KIETL---SGLRKLYSLVNLDLSSN-QIEELDEVNHIGN------LPCLETLRLTGNP  410 (490)
T ss_pred             hhHhhhcCEeeeehhhh-hHhhh---hhhHhhhhheecccccc-chhhHHHhccccc------ccHHHHHhhcCCC
Confidence            66677888888888765 35555   46677888888888873 3332  2344455      7777777777644

>PRK15386 type III secretion protein GogB; Provisional

Probab=98.20  E-value=3.3e-06  Score=79.02  Aligned_cols=134  Identities=21%  Similarity=0.291  Sum_probs=92.1

Q ss_pred             ccCcccEEEeCCcccccccccCCCCccccccccceEEEEecccccccccccCccccCccCEEEEcccCCcccccchhhhh
Q 036454          218 GIAQIKSLKLKKLWLIEEHLWNPDSKLDSFLQNLEFLEVKKCALSLISLVPSSASFRNLTVLKVCNCWQLISLVTPQTAK  297 (410)
Q Consensus       218 ~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~l~~l~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~  297 (410)
                      .+.++++|++++| .+ ..+       ....++|++|.+++|. .++.+|..+  +++|++|.+++|.++..+|      
T Consensus        50 ~~~~l~~L~Is~c-~L-~sL-------P~LP~sLtsL~Lsnc~-nLtsLP~~L--P~nLe~L~Ls~Cs~L~sLP------  111 (426)
T PRK15386         50 EARASGRLYIKDC-DI-ESL-------PVLPNELTEITIENCN-NLTTLPGSI--PEGLEKLTVCHCPEISGLP------  111 (426)
T ss_pred             HhcCCCEEEeCCC-CC-ccc-------CCCCCCCcEEEccCCC-CcccCCchh--hhhhhheEccCcccccccc------
Confidence            4588999999998 55 444       1344579999999998 887776533  4689999999997776554      


Q ss_pred             cCCCccEEEecc--CcccchhccccCCCCccccccccceeecCcCcccceecCCCcccCC-CCccEEEEecCCCCcccCC
Q 036454          298 TLVQLRELRVSE--CNRLEEIVANDGDADDEIVFSKLKWLFLESSESITSFCSGNYAFSF-PSLEDLIVENCPKLNTFSA  374 (410)
Q Consensus       298 ~l~~L~~L~l~~--c~~l~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~-~~L~~L~l~~c~~l~~~~~  374 (410)
                        ++|+.|++.+  |..+..+            .++|+.|.+.+..........   ..+ ++|++|.+.+|..+. +|.
T Consensus       112 --~sLe~L~L~~n~~~~L~~L------------PssLk~L~I~~~n~~~~~~lp---~~LPsSLk~L~Is~c~~i~-LP~  173 (426)
T PRK15386        112 --ESVRSLEIKGSATDSIKNV------------PNGLTSLSINSYNPENQARID---NLISPSLKTLSLTGCSNII-LPE  173 (426)
T ss_pred             --cccceEEeCCCCCcccccC------------cchHhheeccccccccccccc---cccCCcccEEEecCCCccc-Ccc
Confidence              3688888864  2223333            567888888653322111111   124 589999999998664 666


Q ss_pred             CCCCCCCcceeEecc
Q 036454          375 GVLKTPRLQAVQNWE  389 (410)
Q Consensus       375 ~~~~~~~L~~l~~~~  389 (410)
                      ++  +.+|+.|.+..
T Consensus       174 ~L--P~SLk~L~ls~  186 (426)
T PRK15386        174 KL--PESLQSITLHI  186 (426)
T ss_pred             cc--cccCcEEEecc
Confidence            54  68999999863

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.17  E-value=1.7e-06  Score=75.92  Aligned_cols=190  Identities=18%  Similarity=0.201  Sum_probs=110.4

Q ss_pred             cccccEEEEEeCCCccch--hhhhhhcccCceEEEeccccccccccchhhccccccCcccEEEeCCcccccccc-cCCCC
Q 036454          166 FHKLKILHFISDGSDFFQ--VGLLQNIHNLEKLVLSTCEYKKIFSCEEVEEHAEGIAQIKSLKLKKLWLIEEHL-WNPDS  242 (410)
Q Consensus       166 l~~L~~L~l~~~~~~~~~--~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~-~~~~~  242 (410)
                      ...++.+++.++.++++.  ..++.++|.|+.|+++.+.+...+..     ......+|++|.+.+     +.+ |....
T Consensus        70 ~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~-----lp~p~~nl~~lVLNg-----T~L~w~~~~  139 (418)
T KOG2982|consen   70 VTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKS-----LPLPLKNLRVLVLNG-----TGLSWTQST  139 (418)
T ss_pred             hhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCcccc-----CcccccceEEEEEcC-----CCCChhhhh
Confidence            555666666444444433  23567899999999998876655441     113457899999987     443 22233


Q ss_pred             ccccccccceEEEEecccccccccc---cCc-cccCccCEEEEcccCCcccccchhhhhcCCCccEEEeccCcccchh-c
Q 036454          243 KLDSFLQNLEFLEVKKCALSLISLV---PSS-ASFRNLTVLKVCNCWQLISLVTPQTAKTLVQLRELRVSECNRLEEI-V  317 (410)
Q Consensus       243 ~~~~~~~~L~~L~l~~~~~~l~~l~---~~~-~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~-~  317 (410)
                      .....+|.+++|+++.|.  +..+-   ... ..-+.+++|+...|.-..-.........+|++..+.+..|+-.+.- .
T Consensus       140 s~l~~lP~vtelHmS~N~--~rq~n~Dd~c~e~~s~~v~tlh~~~c~~~~w~~~~~l~r~Fpnv~sv~v~e~PlK~~s~e  217 (418)
T KOG2982|consen  140 SSLDDLPKVTELHMSDNS--LRQLNLDDNCIEDWSTEVLTLHQLPCLEQLWLNKNKLSRIFPNVNSVFVCEGPLKTESSE  217 (418)
T ss_pred             hhhhcchhhhhhhhccch--hhhhccccccccccchhhhhhhcCCcHHHHHHHHHhHHhhcccchheeeecCcccchhhc
Confidence            446677888888888873  21110   000 1234567777777742111111112356788888888777543222 1


Q ss_pred             cccCCCCccccccccceeecCcCcccceecCCCcccCCCCccEEEEecCCCCcccCC
Q 036454          318 ANDGDADDEIVFSKLKWLFLESSESITSFCSGNYAFSFPSLEDLIVENCPKLNTFSA  374 (410)
Q Consensus       318 ~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~  374 (410)
                      .....      +|.+.-|.+.. .++.++..-.....||.|..|.+.+.|-...+..
T Consensus       218 k~se~------~p~~~~LnL~~-~~idswasvD~Ln~f~~l~dlRv~~~Pl~d~l~~  267 (418)
T KOG2982|consen  218 KGSEP------FPSLSCLNLGA-NNIDSWASVDALNGFPQLVDLRVSENPLSDPLRG  267 (418)
T ss_pred             ccCCC------CCcchhhhhcc-cccccHHHHHHHcCCchhheeeccCCcccccccC
Confidence            22223      67777777766 4555544322334588888888888877665543

>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]

Probab=98.13  E-value=2.8e-07  Score=90.84  Aligned_cols=39  Identities=26%  Similarity=0.252  Sum_probs=19.3

Q ss_pred             cceeecCcCcccceecCCCcccCCCCccEEEEecCCCCc
Q 036454          332 LKWLFLESSESITSFCSGNYAFSFPSLEDLIVENCPKLN  370 (410)
Q Consensus       332 L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~l~~c~~l~  370 (410)
                      ++.|.+..|...+..........+..++.+.+.+|+.+.
T Consensus       403 l~~L~l~~~~~~t~~~l~~~~~~~~~~~~l~~~~~~~~~  441 (482)
T KOG1947|consen  403 LRVLNLSDCRLVTDKGLRCLADSCSNLKDLDLSGCRVIT  441 (482)
T ss_pred             cceEecccCccccccchHHHhhhhhccccCCccCccccc
Confidence            566666666555544332211114455555666655544

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=98.04  E-value=1.4e-05  Score=54.39  Aligned_cols=59  Identities=27%  Similarity=0.368  Sum_probs=32.0

Q ss_pred             CcccEEEeccCcCccccCchhHHhhhhccceEeeccccCcceEeccCCCCCCCcccccCCCccEEeeccC
Q 036454           47 RNLVVVRIFDCQSLKNIFPTSIARSLLRLETLSIKDCGSVEEIVANDGRGNDAATKFIFPSLTFLRLRDL  116 (410)
Q Consensus        47 ~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~  116 (410)
                      |+|++|++++| .++.+++..+ .++++|++|+++++. ++.++.        ..+..+++|++|+++++
T Consensus         1 p~L~~L~l~~n-~l~~i~~~~f-~~l~~L~~L~l~~N~-l~~i~~--------~~f~~l~~L~~L~l~~N   59 (61)
T PF13855_consen    1 PNLESLDLSNN-KLTEIPPDSF-SNLPNLETLDLSNNN-LTSIPP--------DAFSNLPNLRYLDLSNN   59 (61)
T ss_dssp             TTESEEEETSS-TESEECTTTT-TTGTTESEEEETSSS-ESEEET--------TTTTTSTTESEEEETSS
T ss_pred             CcCcEEECCCC-CCCccCHHHH-cCCCCCCEeEccCCc-cCccCH--------HHHcCCCCCCEEeCcCC
Confidence            35566666665 5555544332 456666666666554 555553        13445566666666554

...

>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]

Probab=97.96  E-value=3.4e-06  Score=75.57  Aligned_cols=15  Identities=13%  Similarity=0.180  Sum_probs=9.3

Q ss_pred             hhhhccceEeecccc
Q 036454           70 RSLLRLETLSIKDCG   84 (410)
Q Consensus        70 ~~l~~L~~L~l~~~~   84 (410)
                      ..+..+++++++|+.
T Consensus        27 ~~~~s~~~l~lsgnt   41 (382)
T KOG1909|consen   27 EPMDSLTKLDLSGNT   41 (382)
T ss_pred             cccCceEEEeccCCc
Confidence            345567777777654

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=97.89  E-value=3.2e-05  Score=52.55  Aligned_cols=59  Identities=25%  Similarity=0.350  Sum_probs=47.2

Q ss_pred             hccceEeeccccCcceEeccCCCCCCCcccccCCCccEEeeccCCCccccccCcccCCCCCceEEEEccC
Q 036454           73 LRLETLSIKDCGSVEEIVANDGRGNDAATKFIFPSLTFLRLRDLPDLTTFYSGMHILECPELRKLEVNHV  142 (410)
Q Consensus        73 ~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~~  142 (410)
                      |+|++|+++++. +..++.        ..+..+++|+.|+++++ .++.++...+. .+++|++|+++++
T Consensus         1 p~L~~L~l~~n~-l~~i~~--------~~f~~l~~L~~L~l~~N-~l~~i~~~~f~-~l~~L~~L~l~~N   59 (61)
T PF13855_consen    1 PNLESLDLSNNK-LTEIPP--------DSFSNLPNLETLDLSNN-NLTSIPPDAFS-NLPNLRYLDLSNN   59 (61)
T ss_dssp             TTESEEEETSST-ESEECT--------TTTTTGTTESEEEETSS-SESEEETTTTT-TSTTESEEEETSS
T ss_pred             CcCcEEECCCCC-CCccCH--------HHHcCCCCCCEeEccCC-ccCccCHHHHc-CCCCCCEEeCcCC
Confidence            689999999985 988886        25677899999999977 77888777665 6777777777665

...

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.80  E-value=1.1e-05  Score=70.96  Aligned_cols=87  Identities=18%  Similarity=0.103  Sum_probs=47.2

Q ss_pred             cCcccEEEeccCcCccc-cCchhHHhhhhccceEeeccccCcceEeccCCCCCCCcccccCCCccEEeeccCCCcccccc
Q 036454           46 FRNLVVVRIFDCQSLKN-IFPTSIARSLLRLETLSIKDCGSVEEIVANDGRGNDAATKFIFPSLTFLRLRDLPDLTTFYS  124 (410)
Q Consensus        46 l~~L~~L~l~~~~~l~~-~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~  124 (410)
                      ...+..+.+.+| .+.. -....+...+.+++++|+.++. +.++..-+      ..+.++|.|+.|+++.++-...+  
T Consensus        44 ~ra~ellvln~~-~id~~gd~~~~~~~~~~v~elDL~~N~-iSdWseI~------~ile~lP~l~~LNls~N~L~s~I--  113 (418)
T KOG2982|consen   44 LRALELLVLNGS-IIDNEGDVMLFGSSVTDVKELDLTGNL-ISDWSEIG------AILEQLPALTTLNLSCNSLSSDI--  113 (418)
T ss_pred             ccchhhheecCC-CCCcchhHHHHHHHhhhhhhhhcccch-hccHHHHH------HHHhcCccceEeeccCCcCCCcc--
Confidence            334445666666 3322 2233455777888888887764 33322111      15567788888888877432222  


Q ss_pred             CcccCCCCCceEEEEccC
Q 036454          125 GMHILECPELRKLEVNHV  142 (410)
Q Consensus       125 ~~~~~~~~~L~~L~l~~~  142 (410)
                      +..+....+|+.|.+.+.
T Consensus       114 ~~lp~p~~nl~~lVLNgT  131 (418)
T KOG2982|consen  114 KSLPLPLKNLRVLVLNGT  131 (418)
T ss_pred             ccCcccccceEEEEEcCC
Confidence            111124456666666554

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=97.78  E-value=2.5e-05  Score=74.99  Aligned_cols=171  Identities=21%  Similarity=0.247  Sum_probs=87.9

Q ss_pred             hhhccceEeeccccCcceEeccCCCCCCCcccccCC-CccEEeeccCCCccccccCcccCCCCCceEEEEccCCcccccc
Q 036454           71 SLLRLETLSIKDCGSVEEIVANDGRGNDAATKFIFP-SLTFLRLRDLPDLTTFYSGMHILECPELRKLEVNHVDVFANLE  149 (410)
Q Consensus        71 ~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~l~-~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~l~~L~  149 (410)
                      .++.++.|++.+.. +.+++.         ....+. +|+.|+++++ .+..++...  ..+              +.|+
T Consensus       114 ~~~~l~~L~l~~n~-i~~i~~---------~~~~~~~nL~~L~l~~N-~i~~l~~~~--~~l--------------~~L~  166 (394)
T COG4886         114 ELTNLTSLDLDNNN-ITDIPP---------LIGLLKSNLKELDLSDN-KIESLPSPL--RNL--------------PNLK  166 (394)
T ss_pred             cccceeEEecCCcc-cccCcc---------ccccchhhccccccccc-chhhhhhhh--hcc--------------cccc
Confidence            44556666666554 555554         334442 6666666665 343332111  122              3444


Q ss_pred             EEEeeccCccccccc--ccccccEEEEEeCCCccchhhhhhhcccCceEEEeccccccccccchhhccccccCcccEEEe
Q 036454          150 ELTLSKCIFTTWRQA--QFHKLKILHFISDGSDFFQVGLLQNIHNLEKLVLSTCEYKKIFSCEEVEEHAEGIAQIKSLKL  227 (410)
Q Consensus       150 ~L~i~~~~~~~~~~~--~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l  227 (410)
                      .|++++|.....+..  ..++|+.|++++..+..++... ....+|++|.++++.......      ....+.++..+.+
T Consensus       167 ~L~l~~N~l~~l~~~~~~~~~L~~L~ls~N~i~~l~~~~-~~~~~L~~l~~~~N~~~~~~~------~~~~~~~l~~l~l  239 (394)
T COG4886         167 NLDLSFNDLSDLPKLLSNLSNLNNLDLSGNKISDLPPEI-ELLSALEELDLSNNSIIELLS------SLSNLKNLSGLEL  239 (394)
T ss_pred             ccccCCchhhhhhhhhhhhhhhhheeccCCccccCchhh-hhhhhhhhhhhcCCcceecch------hhhhccccccccc
Confidence            444444444444333  2445555555444444544321 233457777777764323222      2344555555554


Q ss_pred             CCcccccccccCCCCccccccccceEEEEecccccccccccCccccCccCEEEEccc
Q 036454          228 KKLWLIEEHLWNPDSKLDSFLQNLEFLEVKKCALSLISLVPSSASFRNLTVLKVCNC  284 (410)
Q Consensus       228 ~~c~~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~l~~l~~~~~~~~~L~~L~l~~c  284 (410)
                      ......  .+    ......+++++.|++++|  .+++++. .+...+++.|++++.
T Consensus       240 ~~n~~~--~~----~~~~~~l~~l~~L~~s~n--~i~~i~~-~~~~~~l~~L~~s~n  287 (394)
T COG4886         240 SNNKLE--DL----PESIGNLSNLETLDLSNN--QISSISS-LGSLTNLRELDLSGN  287 (394)
T ss_pred             CCceee--ec----cchhccccccceeccccc--ccccccc-ccccCccCEEeccCc
Confidence            431111  10    234566677888888887  5666655 667777888887665

>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]

Probab=97.70  E-value=1.6e-06  Score=77.62  Aligned_cols=70  Identities=21%  Similarity=0.247  Sum_probs=43.0

Q ss_pred             cccccccCCcEEEecCccccccccccCCcc-------ccccCcccEEEeccCcCccc--c-CchhHHhhhhccceEeecc
Q 036454           13 THSGAATQLRELHVFHLPKLTKLWNKDPQG-------KLIFRNLVVVRIFDCQSLKN--I-FPTSIARSLLRLETLSIKD   82 (410)
Q Consensus        13 ~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~-------~~~l~~L~~L~l~~~~~l~~--~-~~~~~~~~l~~L~~L~l~~   82 (410)
                      ..+.+-++|++.++++.-.-+ .-...|+.       +...|+|++|+|+++ .+..  . +...+..++..|++|++.+
T Consensus        52 ~~L~~~~~L~~v~~sd~ftGR-~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDN-A~G~~g~~~l~~ll~s~~~L~eL~L~N  129 (382)
T KOG1909|consen   52 KVLASKKELREVNLSDMFTGR-LKDEIPEALKMLSKALLGCPKLQKLDLSDN-AFGPKGIRGLEELLSSCTDLEELYLNN  129 (382)
T ss_pred             HHHhhcccceeeehHhhhcCC-cHHHHHHHHHHHHHHHhcCCceeEeecccc-ccCccchHHHHHHHHhccCHHHHhhhc
Confidence            346667789999988852111 11111222       246789999999988 3321  1 1113336788899999998


Q ss_pred             cc
Q 036454           83 CG   84 (410)
Q Consensus        83 ~~   84 (410)
                      |.
T Consensus       130 ~G  131 (382)
T KOG1909|consen  130 CG  131 (382)
T ss_pred             CC
Confidence            86

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=97.69  E-value=5.3e-05  Score=72.75  Aligned_cols=174  Identities=26%  Similarity=0.258  Sum_probs=96.9

Q ss_pred             cccCCCccEEeeccCCCccccccCcccCCCCCceEEEEccCCccccccEEEeeccCccccc-ccc-cccccEEEEEeCCC
Q 036454          102 KFIFPSLTFLRLRDLPDLTTFYSGMHILECPELRKLEVNHVDVFANLEELTLSKCIFTTWR-QAQ-FHKLKILHFISDGS  179 (410)
Q Consensus       102 ~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~l~~L~~L~i~~~~~~~~~-~~~-l~~L~~L~l~~~~~  179 (410)
                      +..++.++.|++.+. .+.+++.....  ..             ++|+.|+++++.+...+ +.. +++|+.|++....+
T Consensus       112 ~~~~~~l~~L~l~~n-~i~~i~~~~~~--~~-------------~nL~~L~l~~N~i~~l~~~~~~l~~L~~L~l~~N~l  175 (394)
T COG4886         112 LLELTNLTSLDLDNN-NITDIPPLIGL--LK-------------SNLKELDLSDNKIESLPSPLRNLPNLKNLDLSFNDL  175 (394)
T ss_pred             hhcccceeEEecCCc-ccccCcccccc--ch-------------hhcccccccccchhhhhhhhhccccccccccCCchh
Confidence            344456777777665 44444332211  10             14555566666555552 222 77777777766666


Q ss_pred             ccchhhhhhhcccCceEEEeccccccccccchhhccccccCcccEEEeCCcccccccccCCCCccccccccceEEEEecc
Q 036454          180 DFFQVGLLQNIHNLEKLVLSTCEYKKIFSCEEVEEHAEGIAQIKSLKLKKLWLIEEHLWNPDSKLDSFLQNLEFLEVKKC  259 (410)
Q Consensus       180 ~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~L~~L~l~~~  259 (410)
                      .+++.. ....++|+.|.++++.+..+..      .......|+++.+++-...      ........++++..|.+.++
T Consensus       176 ~~l~~~-~~~~~~L~~L~ls~N~i~~l~~------~~~~~~~L~~l~~~~N~~~------~~~~~~~~~~~l~~l~l~~n  242 (394)
T COG4886         176 SDLPKL-LSNLSNLNNLDLSGNKISDLPP------EIELLSALEELDLSNNSII------ELLSSLSNLKNLSGLELSNN  242 (394)
T ss_pred             hhhhhh-hhhhhhhhheeccCCccccCch------hhhhhhhhhhhhhcCCcce------ecchhhhhcccccccccCCc
Confidence            665532 1256777777777777666654      1123445777777662111      11233455666666666665


Q ss_pred             cccccccccCccccCccCEEEEcccCCcccccchhhhhcCCCccEEEeccC
Q 036454          260 ALSLISLVPSSASFRNLTVLKVCNCWQLISLVTPQTAKTLVQLRELRVSEC  310 (410)
Q Consensus       260 ~~~l~~l~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c  310 (410)
                        .+..++...+.++++++|+++++ .+.+++.   ...+.+++.|++++.
T Consensus       243 --~~~~~~~~~~~l~~l~~L~~s~n-~i~~i~~---~~~~~~l~~L~~s~n  287 (394)
T COG4886         243 --KLEDLPESIGNLSNLETLDLSNN-QISSISS---LGSLTNLRELDLSGN  287 (394)
T ss_pred             --eeeeccchhccccccceeccccc-ccccccc---ccccCccCEEeccCc
Confidence              34443445566677777777554 3555532   466677777777764

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=97.64  E-value=2.1e-05  Score=79.74  Aligned_cols=124  Identities=17%  Similarity=0.135  Sum_probs=71.4

Q ss_pred             CCccEEeeccCCCccccccCcccCCCCCceEEEEccC-----------CccccccEEEeeccCcccccccc-cccccEEE
Q 036454          106 PSLTFLRLRDLPDLTTFYSGMHILECPELRKLEVNHV-----------DVFANLEELTLSKCIFTTWRQAQ-FHKLKILH  173 (410)
Q Consensus       106 ~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~~-----------~~l~~L~~L~i~~~~~~~~~~~~-l~~L~~L~  173 (410)
                      .+|++|+++|...+..-+.......+|+|++|.+++-           ..+|+|..|||+++++....... +++|+.|.
T Consensus       122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl~GIS~LknLq~L~  201 (699)
T KOG3665|consen  122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNLSGISRLKNLQVLS  201 (699)
T ss_pred             HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCcHHHhccccHHHHh
Confidence            3566666666544433333333335677777766653           56777888888877776553332 77777777


Q ss_pred             EEeCCCcc-chhhhhhhcccCceEEEecccccccccc-chhhccccccCcccEEEeCC
Q 036454          174 FISDGSDF-FQVGLLQNIHNLEKLVLSTCEYKKIFSC-EEVEEHAEGIAQIKSLKLKK  229 (410)
Q Consensus       174 l~~~~~~~-~~~~~l~~l~~L~~L~l~~~~~~~~~~~-~~~~~~~~~l~~L~~L~l~~  229 (410)
                      +++-.... .....+.++++|+.|++|..+....... .+--+....+|+||.|+.++
T Consensus       202 mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSg  259 (699)
T KOG3665|consen  202 MRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSG  259 (699)
T ss_pred             ccCCCCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCC
Confidence            75444333 3344567888888888887532111100 00011233467888888776

>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]

Probab=97.63  E-value=7e-06  Score=79.22  Aligned_cols=81  Identities=19%  Similarity=0.178  Sum_probs=49.5

Q ss_pred             cccccCCcEEEecCccccccccccCCcc-ccccCcccEEEeccCcCccccCchhHHhhhhccceEeeccccCcceEeccC
Q 036454           15 SGAATQLRELHVFHLPKLTKLWNKDPQG-KLIFRNLVVVRIFDCQSLKNIFPTSIARSLLRLETLSIKDCGSVEEIVAND   93 (410)
Q Consensus        15 ~~~~~~L~~L~l~~~~~l~~~~~~~~~~-~~~l~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~   93 (410)
                      ++.+.+|+.|++.+. .++.+     .. +.++++|++|+++++ .+..+.+.   ..++.|+.|++.++. +..+.   
T Consensus        91 l~~~~~l~~l~l~~n-~i~~i-----~~~l~~~~~L~~L~ls~N-~I~~i~~l---~~l~~L~~L~l~~N~-i~~~~---  156 (414)
T KOG0531|consen   91 LSKLKSLEALDLYDN-KIEKI-----ENLLSSLVNLQVLDLSFN-KITKLEGL---STLTLLKELNLSGNL-ISDIS---  156 (414)
T ss_pred             cccccceeeeecccc-chhhc-----ccchhhhhcchheecccc-ccccccch---hhccchhhheeccCc-chhcc---
Confidence            666777777777765 34433     22 446777777777766 55555444   456667777777765 55544   


Q ss_pred             CCCCCCcccccCCCccEEeeccC
Q 036454           94 GRGNDAATKFIFPSLTFLRLRDL  116 (410)
Q Consensus        94 ~~~~~~~~~~~l~~L~~L~l~~~  116 (410)
                             .+..++.|+.++++++
T Consensus       157 -------~~~~l~~L~~l~l~~n  172 (414)
T KOG0531|consen  157 -------GLESLKSLKLLDLSYN  172 (414)
T ss_pred             -------CCccchhhhcccCCcc
Confidence                   2333566677777666

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=97.60  E-value=1.9e-05  Score=80.06  Aligned_cols=94  Identities=16%  Similarity=0.173  Sum_probs=44.6

Q ss_pred             ccCCCccEEeeccCCCccccccCcccCCCCCceEEEEccC-----------CccccccEEEeeccCcccccc--------
Q 036454          103 FIFPSLTFLRLRDLPDLTTFYSGMHILECPELRKLEVNHV-----------DVFANLEELTLSKCIFTTWRQ--------  163 (410)
Q Consensus       103 ~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~~-----------~~l~~L~~L~i~~~~~~~~~~--------  163 (410)
                      .+||+|..||+|++ +++.+...   .++++|+.|.+++.           -.+.+|+.||+|.........        
T Consensus       170 ~sFpNL~sLDIS~T-nI~nl~GI---S~LknLq~L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec  245 (699)
T KOG3665|consen  170 ASFPNLRSLDISGT-NISNLSGI---SRLKNLQVLSMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLEC  245 (699)
T ss_pred             hccCccceeecCCC-CccCcHHH---hccccHHHHhccCCCCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHh
Confidence            34455555555554 33333111   24444444444443           234566666666544322210        


Q ss_pred             c-ccccccEEEEEeCCCccchhh-hhhhcccCceEEEec
Q 036454          164 A-QFHKLKILHFISDGSDFFQVG-LLQNIHNLEKLVLST  200 (410)
Q Consensus       164 ~-~l~~L~~L~l~~~~~~~~~~~-~l~~l~~L~~L~l~~  200 (410)
                      . .+|+||.||.++........+ .+..=++|+.+.+-+
T Consensus       246 ~~~LpeLrfLDcSgTdi~~~~le~ll~sH~~L~~i~~~~  284 (699)
T KOG3665|consen  246 GMVLPELRFLDCSGTDINEEILEELLNSHPNLQQIAALD  284 (699)
T ss_pred             cccCccccEEecCCcchhHHHHHHHHHhCccHhhhhhhh
Confidence            1 177888888755544433322 233345666655443

>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]

Probab=97.58  E-value=6.7e-06  Score=81.05  Aligned_cols=139  Identities=25%  Similarity=0.211  Sum_probs=80.4

Q ss_pred             cccccEEEE-EeCCCccch-hhhhhhcccCceEEEecc-ccccccccchhhccccccCcccEEEeCCcccccccccCCCC
Q 036454          166 FHKLKILHF-ISDGSDFFQ-VGLLQNIHNLEKLVLSTC-EYKKIFSCEEVEEHAEGIAQIKSLKLKKLWLIEEHLWNPDS  242 (410)
Q Consensus       166 l~~L~~L~l-~~~~~~~~~-~~~l~~l~~L~~L~l~~~-~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~  242 (410)
                      .+.|+.|.+ .+....... ......+++|+.|.++++ ....... .........+.+|+.|+++.|..+ ...   +.
T Consensus       187 ~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~-~~~~~~~~~~~~L~~l~l~~~~~i-sd~---~l  261 (482)
T KOG1947|consen  187 CPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSP-LLLLLLLSICRKLKSLDLSGCGLV-TDI---GL  261 (482)
T ss_pred             CchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccch-hHhhhhhhhcCCcCccchhhhhcc-Cch---hH
Confidence            566777777 444444322 234567788888888873 2111111 001113445688888888887644 222   12


Q ss_pred             c-cccccccceEEEEecccccccc--cccCccccCccCEEEEcccCCcccccchhhhhcCCCccEEEeccC
Q 036454          243 K-LDSFLQNLEFLEVKKCALSLIS--LVPSSASFRNLTVLKVCNCWQLISLVTPQTAKTLVQLRELRVSEC  310 (410)
Q Consensus       243 ~-~~~~~~~L~~L~l~~~~~~l~~--l~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c  310 (410)
                      . ....+++|++|.+.+|. .+++  +......+++|++|++++|..+++.........+++|+.|.+..+
T Consensus       262 ~~l~~~c~~L~~L~l~~c~-~lt~~gl~~i~~~~~~L~~L~l~~c~~~~d~~l~~~~~~c~~l~~l~~~~~  331 (482)
T KOG1947|consen  262 SALASRCPNLETLSLSNCS-NLTDEGLVSIAERCPSLRELDLSGCHGLTDSGLEALLKNCPNLRELKLLSL  331 (482)
T ss_pred             HHHHhhCCCcceEccCCCC-ccchhHHHHHHHhcCcccEEeeecCccchHHHHHHHHHhCcchhhhhhhhc
Confidence            2 23347888888888886 5433  223345677888888888877755433334555777777665443

>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]

Probab=97.27  E-value=1.5e-05  Score=76.09  Aligned_cols=148  Identities=17%  Similarity=0.244  Sum_probs=83.6

Q ss_pred             CccccccCcccEEEeccCcCccccCchhHHhhhhccceEeeccccCcceEeccCCCCCCCcccccCCCccEEeeccCCCc
Q 036454           40 PQGKLIFRNLVVVRIFDCQSLKNIFPTSIARSLLRLETLSIKDCGSVEEIVANDGRGNDAATKFIFPSLTFLRLRDLPDL  119 (410)
Q Consensus        40 ~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l  119 (410)
                      |..++.|..|..+.++.+ .+..++. .+ .++..|.++|++.+. +..+|.         .+. +--|+.|-++++ ++
T Consensus        91 p~~~~~f~~Le~liLy~n-~~r~ip~-~i-~~L~~lt~l~ls~Nq-lS~lp~---------~lC-~lpLkvli~sNN-kl  155 (722)
T KOG0532|consen   91 PEEACAFVSLESLILYHN-CIRTIPE-AI-CNLEALTFLDLSSNQ-LSHLPD---------GLC-DLPLKVLIVSNN-KL  155 (722)
T ss_pred             chHHHHHHHHHHHHHHhc-cceecch-hh-hhhhHHHHhhhccch-hhcCCh---------hhh-cCcceeEEEecC-cc
Confidence            444444555555555443 2222222 22 355555555555443 444443         111 123455555444 44


Q ss_pred             cccccCcccCCCCCceEEEEccC---------CccccccEEEeeccCcccccccc-cccccEEEEEeCCCccchhhhhhh
Q 036454          120 TTFYSGMHILECPELRKLEVNHV---------DVFANLEELTLSKCIFTTWRQAQ-FHKLKILHFISDGSDFFQVGLLQN  189 (410)
Q Consensus       120 ~~~~~~~~~~~~~~L~~L~l~~~---------~~l~~L~~L~i~~~~~~~~~~~~-l~~L~~L~l~~~~~~~~~~~~l~~  189 (410)
                      +.+|..+.  ..+.|..|+.+.|         ..+.+|+.|.+..|....++... .-.|..||++|+.+..+|.. +.+
T Consensus       156 ~~lp~~ig--~~~tl~~ld~s~nei~slpsql~~l~slr~l~vrRn~l~~lp~El~~LpLi~lDfScNkis~iPv~-fr~  232 (722)
T KOG0532|consen  156 TSLPEEIG--LLPTLAHLDVSKNEIQSLPSQLGYLTSLRDLNVRRNHLEDLPEELCSLPLIRLDFSCNKISYLPVD-FRK  232 (722)
T ss_pred             ccCCcccc--cchhHHHhhhhhhhhhhchHHhhhHHHHHHHHHhhhhhhhCCHHHhCCceeeeecccCceeecchh-hhh
Confidence            44444331  3344555555444         23357777778888777776665 34578888899999999975 488


Q ss_pred             cccCceEEEecccccc
Q 036454          190 IHNLEKLVLSTCEYKK  205 (410)
Q Consensus       190 l~~L~~L~l~~~~~~~  205 (410)
                      |..|+.|.+.+|.+..
T Consensus       233 m~~Lq~l~LenNPLqS  248 (722)
T KOG0532|consen  233 MRHLQVLQLENNPLQS  248 (722)
T ss_pred             hhhheeeeeccCCCCC
Confidence            9999999999876543

>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]

Probab=97.19  E-value=1.7e-05  Score=75.69  Aligned_cols=99  Identities=14%  Similarity=0.108  Sum_probs=50.3

Q ss_pred             ccEEEeeccCcccccccc--cccccEEEEEeCCCccchhhhhhhcccCceEEEeccccccccccchhhccccccCcccEE
Q 036454          148 LEELTLSKCIFTTWRQAQ--FHKLKILHFISDGSDFFQVGLLQNIHNLEKLVLSTCEYKKIFSCEEVEEHAEGIAQIKSL  225 (410)
Q Consensus       148 L~~L~i~~~~~~~~~~~~--l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~L~~L  225 (410)
                      |+.|.+++|.+...+...  ...|..|+.+++.+..++. .++++.+|+.|.+..+++..++.      ... .-.|..|
T Consensus       145 Lkvli~sNNkl~~lp~~ig~~~tl~~ld~s~nei~slps-ql~~l~slr~l~vrRn~l~~lp~------El~-~LpLi~l  216 (722)
T KOG0532|consen  145 LKVLIVSNNKLTSLPEEIGLLPTLAHLDVSKNEIQSLPS-QLGYLTSLRDLNVRRNHLEDLPE------ELC-SLPLIRL  216 (722)
T ss_pred             ceeEEEecCccccCCcccccchhHHHhhhhhhhhhhchH-HhhhHHHHHHHHHhhhhhhhCCH------HHh-CCceeee
Confidence            455555555555444433  4555555555544444442 34556666666666665555443      111 2335555


Q ss_pred             EeCCcccccccccCCCCccccccccceEEEEeccc
Q 036454          226 KLKKLWLIEEHLWNPDSKLDSFLQNLEFLEVKKCA  260 (410)
Q Consensus       226 ~l~~c~~l~~~~~~~~~~~~~~~~~L~~L~l~~~~  260 (410)
                      +++ |+++ ..+    +..+..+..|++|.+.+|+
T Consensus       217 DfS-cNki-s~i----Pv~fr~m~~Lq~l~LenNP  245 (722)
T KOG0532|consen  217 DFS-CNKI-SYL----PVDFRKMRHLQVLQLENNP  245 (722)
T ss_pred             ecc-cCce-eec----chhhhhhhhheeeeeccCC
Confidence            554 3333 333    2335556666666666664

>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]

Probab=97.13  E-value=3.3e-05  Score=75.79  Aligned_cols=39  Identities=18%  Similarity=0.200  Sum_probs=17.2

Q ss_pred             cccccEEEEEeCCCccchhhhhhhcccCceEEEeccccccc
Q 036454          166 FHKLKILHFISDGSDFFQVGLLQNIHNLEKLVLSTCEYKKI  206 (410)
Q Consensus       166 l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~  206 (410)
                      ++.|+.|+++.+...+..  .+..+++|++|+++.|++..+
T Consensus       186 l~ale~LnLshNk~~~v~--~Lr~l~~LkhLDlsyN~L~~v  224 (1096)
T KOG1859|consen  186 LPALESLNLSHNKFTKVD--NLRRLPKLKHLDLSYNCLRHV  224 (1096)
T ss_pred             HHHhhhhccchhhhhhhH--HHHhcccccccccccchhccc
Confidence            444444444333333322  344455555555555444443

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=97.10  E-value=0.00063  Score=42.52  Aligned_cols=38  Identities=24%  Similarity=0.439  Sum_probs=19.7

Q ss_pred             cccEEEeccCcCccccCchhHHhhhhccceEeeccccCcceE
Q 036454           48 NLVVVRIFDCQSLKNIFPTSIARSLLRLETLSIKDCGSVEEI   89 (410)
Q Consensus        48 ~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~   89 (410)
                      +|++|+++++ .++++++. + +++++|++|+++++. ++++
T Consensus         2 ~L~~L~l~~N-~i~~l~~~-l-~~l~~L~~L~l~~N~-i~~i   39 (44)
T PF12799_consen    2 NLEELDLSNN-QITDLPPE-L-SNLPNLETLNLSNNP-ISDI   39 (44)
T ss_dssp             T-SEEEETSS-S-SSHGGH-G-TTCTTSSEEEETSSC-CSBE
T ss_pred             cceEEEccCC-CCcccCch-H-hCCCCCCEEEecCCC-CCCC
Confidence            5666666666 44455441 1 466666666666654 4444

...

>PLN03150 hypothetical protein; Provisional

Probab=96.89  E-value=0.0025  Score=64.83  Aligned_cols=112  Identities=11%  Similarity=0.081  Sum_probs=69.9

Q ss_pred             cceEEEEecccccccccccCccccCccCEEEEcccCCcc-cccchhhhhcCCCccEEEeccCcccchhccccCCCCcccc
Q 036454          250 NLEFLEVKKCALSLISLVPSSASFRNLTVLKVCNCWQLI-SLVTPQTAKTLVQLRELRVSECNRLEEIVANDGDADDEIV  328 (410)
Q Consensus       250 ~L~~L~l~~~~~~l~~l~~~~~~~~~L~~L~l~~c~~l~-~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~  328 (410)
                      .++.|+++++. .-..++..+..+++|+.|+++++. +. .++  .....+++|+.|+++++.-...++..++.      
T Consensus       419 ~v~~L~L~~n~-L~g~ip~~i~~L~~L~~L~Ls~N~-l~g~iP--~~~~~l~~L~~LdLs~N~lsg~iP~~l~~------  488 (623)
T PLN03150        419 FIDGLGLDNQG-LRGFIPNDISKLRHLQSINLSGNS-IRGNIP--PSLGSITSLEVLDLSYNSFNGSIPESLGQ------  488 (623)
T ss_pred             EEEEEECCCCC-ccccCCHHHhCCCCCCEEECCCCc-ccCcCC--hHHhCCCCCCEEECCCCCCCCCCchHHhc------
Confidence            36777787774 333456666777888888887763 43 343  34577788888888876555566766676      


Q ss_pred             ccccceeecCcCcccc-eecCCCcccCCCCccEEEEecCCCCcccC
Q 036454          329 FSKLKWLFLESSESIT-SFCSGNYAFSFPSLEDLIVENCPKLNTFS  373 (410)
Q Consensus       329 ~~~L~~L~l~~c~~l~-~~~~~~~~~~~~~L~~L~l~~c~~l~~~~  373 (410)
                      +++|+.|+++++. ++ .++.. .......+..+.+.+++.+...|
T Consensus       489 L~~L~~L~Ls~N~-l~g~iP~~-l~~~~~~~~~l~~~~N~~lc~~p  532 (623)
T PLN03150        489 LTSLRILNLNGNS-LSGRVPAA-LGGRLLHRASFNFTDNAGLCGIP  532 (623)
T ss_pred             CCCCCEEECcCCc-ccccCChH-HhhccccCceEEecCCccccCCC
Confidence            8888888888754 33 33322 11123455667777666555433

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=96.85  E-value=0.0013  Score=41.07  Aligned_cols=39  Identities=26%  Similarity=0.437  Sum_probs=22.8

Q ss_pred             ccceEEEEecccccccccccCccccCccCEEEEcccCCcccc
Q 036454          249 QNLEFLEVKKCALSLISLVPSSASFRNLTVLKVCNCWQLISL  290 (410)
Q Consensus       249 ~~L~~L~l~~~~~~l~~l~~~~~~~~~L~~L~l~~c~~l~~~  290 (410)
                      ++|++|++++|  .++++++.++.+++|++|+++++ .++++
T Consensus         1 ~~L~~L~l~~N--~i~~l~~~l~~l~~L~~L~l~~N-~i~~i   39 (44)
T PF12799_consen    1 KNLEELDLSNN--QITDLPPELSNLPNLETLNLSNN-PISDI   39 (44)
T ss_dssp             TT-SEEEETSS--S-SSHGGHGTTCTTSSEEEETSS-CCSBE
T ss_pred             CcceEEEccCC--CCcccCchHhCCCCCCEEEecCC-CCCCC
Confidence            35666666666  45566555666667777777665 35444

...

>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]

Probab=96.79  E-value=0.00016  Score=69.82  Aligned_cols=61  Identities=23%  Similarity=0.283  Sum_probs=33.8

Q ss_pred             cccccEEEeeccCcccccccc-cccccEEEEEeCCCccchh-hhhhhcccCceEEEeccccccc
Q 036454          145 FANLEELTLSKCIFTTWRQAQ-FHKLKILHFISDGSDFFQV-GLLQNIHNLEKLVLSTCEYKKI  206 (410)
Q Consensus       145 l~~L~~L~i~~~~~~~~~~~~-l~~L~~L~l~~~~~~~~~~-~~l~~l~~L~~L~l~~~~~~~~  206 (410)
                      ++.|+.|++.+|.+..+.... +..|+.+++....+..... . +.++.+++.+.+.++.+..+
T Consensus       139 l~~L~~L~l~~N~i~~~~~~~~l~~L~~l~l~~n~i~~ie~~~-~~~~~~l~~l~l~~n~i~~i  201 (414)
T KOG0531|consen  139 LTLLKELNLSGNLISDISGLESLKSLKLLDLSYNRIVDIENDE-LSELISLEELDLGGNSIREI  201 (414)
T ss_pred             ccchhhheeccCcchhccCCccchhhhcccCCcchhhhhhhhh-hhhccchHHHhccCCchhcc
Confidence            345666666666666555544 5566666664444433332 1 35566777777766654443

>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]

Probab=96.74  E-value=9.2e-05  Score=72.82  Aligned_cols=103  Identities=20%  Similarity=0.151  Sum_probs=48.9

Q ss_pred             cccccEEEeeccCcccccccc-cccccEEEEEeCCCccchhhhhhhcccCceEEEeccccccccccchhhccccccCccc
Q 036454          145 FANLEELTLSKCIFTTWRQAQ-FHKLKILHFISDGSDFFQVGLLQNIHNLEKLVLSTCEYKKIFSCEEVEEHAEGIAQIK  223 (410)
Q Consensus       145 l~~L~~L~i~~~~~~~~~~~~-l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~L~  223 (410)
                      +|.++.|+++.|.+..+.... ++.|+.|||+.+....+|......+. |+.|.+.+|.+..+..       ..++.+|+
T Consensus       186 l~ale~LnLshNk~~~v~~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc~-L~~L~lrnN~l~tL~g-------ie~LksL~  257 (1096)
T KOG1859|consen  186 LPALESLNLSHNKFTKVDNLRRLPKLKHLDLSYNCLRHVPQLSMVGCK-LQLLNLRNNALTTLRG-------IENLKSLY  257 (1096)
T ss_pred             HHHhhhhccchhhhhhhHHHHhcccccccccccchhccccccchhhhh-heeeeecccHHHhhhh-------HHhhhhhh
Confidence            445555555555554444322 55566666655444444433333333 5555565555444433       34455555


Q ss_pred             EEEeCCcccccccccC-CCCccccccccceEEEEeccc
Q 036454          224 SLKLKKLWLIEEHLWN-PDSKLDSFLQNLEFLEVKKCA  260 (410)
Q Consensus       224 ~L~l~~c~~l~~~~~~-~~~~~~~~~~~L~~L~l~~~~  260 (410)
                      .|+++.     +.+.. .....++.+..|++|.+.+|+
T Consensus       258 ~LDlsy-----Nll~~hseL~pLwsLs~L~~L~LeGNP  290 (1096)
T KOG1859|consen  258 GLDLSY-----NLLSEHSELEPLWSLSSLIVLWLEGNP  290 (1096)
T ss_pred             ccchhH-----hhhhcchhhhHHHHHHHHHHHhhcCCc
Confidence            555553     21110 011234445555555555554

>PLN03150 hypothetical protein; Provisional

Probab=96.59  E-value=0.0044  Score=63.01  Aligned_cols=109  Identities=18%  Similarity=0.122  Sum_probs=73.9

Q ss_pred             cccEEEeCCcccccccccCCCCccccccccceEEEEecccccccccccCccccCccCEEEEcccCCcc-cccchhhhhcC
Q 036454          221 QIKSLKLKKLWLIEEHLWNPDSKLDSFLQNLEFLEVKKCALSLISLVPSSASFRNLTVLKVCNCWQLI-SLVTPQTAKTL  299 (410)
Q Consensus       221 ~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~l~~l~~~~~~~~~L~~L~l~~c~~l~-~~~~~~~~~~l  299 (410)
                      .++.|+|+++     .+....+..+..+++|+.|++++|. ....+|..++.+++|+.|+++++. +. .++  ...+.+
T Consensus       419 ~v~~L~L~~n-----~L~g~ip~~i~~L~~L~~L~Ls~N~-l~g~iP~~~~~l~~L~~LdLs~N~-lsg~iP--~~l~~L  489 (623)
T PLN03150        419 FIDGLGLDNQ-----GLRGFIPNDISKLRHLQSINLSGNS-IRGNIPPSLGSITSLEVLDLSYNS-FNGSIP--ESLGQL  489 (623)
T ss_pred             EEEEEECCCC-----CccccCCHHHhCCCCCCEEECCCCc-ccCcCChHHhCCCCCCEEECCCCC-CCCCCc--hHHhcC
Confidence            3677777763     3322224457788999999999985 334677778889999999998774 44 344  456788


Q ss_pred             CCccEEEeccCcccchhccccCCCCccccccccceeecCcCccc
Q 036454          300 VQLRELRVSECNRLEEIVANDGDADDEIVFSKLKWLFLESSESI  343 (410)
Q Consensus       300 ~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l  343 (410)
                      ++|+.|+++++.-...+|..++.     .+.++..+.+.+.+.+
T Consensus       490 ~~L~~L~Ls~N~l~g~iP~~l~~-----~~~~~~~l~~~~N~~l  528 (623)
T PLN03150        490 TSLRILNLNGNSLSGRVPAALGG-----RLLHRASFNFTDNAGL  528 (623)
T ss_pred             CCCCEEECcCCcccccCChHHhh-----ccccCceEEecCCccc
Confidence            99999999987655566655443     1345566777765433

>KOG3864 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.37  E-value=0.00046  Score=57.62  Aligned_cols=89  Identities=15%  Similarity=0.221  Sum_probs=50.7

Q ss_pred             ceEEEEecccccccccccCccccCccCEEEEcccCCcccccchhhhhcCCCccEEEeccCcccchhccccCCCCcccccc
Q 036454          251 LEFLEVKKCALSLISLVPSSASFRNLTVLKVCNCWQLISLVTPQTAKTLVQLRELRVSECNRLEEIVANDGDADDEIVFS  330 (410)
Q Consensus       251 L~~L~l~~~~~~l~~l~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~  330 (410)
                      ++.++-+++. ....-...+..++.++.|.+..|..+.+.......+..++|+.|+|++|+.+++.-..     ....++
T Consensus       103 IeaVDAsds~-I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~-----~L~~lk  176 (221)
T KOG3864|consen  103 IEAVDASDSS-IMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLA-----CLLKLK  176 (221)
T ss_pred             EEEEecCCch-HHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHH-----HHHHhh
Confidence            4445555553 2222234455666677777777766665544333455677777777777776654211     111277


Q ss_pred             ccceeecCcCcccce
Q 036454          331 KLKWLFLESSESITS  345 (410)
Q Consensus       331 ~L~~L~l~~c~~l~~  345 (410)
                      +|+.|.+++.+.+..
T Consensus       177 nLr~L~l~~l~~v~~  191 (221)
T KOG3864|consen  177 NLRRLHLYDLPYVAN  191 (221)
T ss_pred             hhHHHHhcCchhhhc
Confidence            777777777665543

>KOG2123 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.23  E-value=0.00031  Score=61.47  Aligned_cols=86  Identities=19%  Similarity=0.139  Sum_probs=59.8

Q ss_pred             CccccccEEEeeccCcccccccc-cccccEEEEEeCCCccch-hhhhhhcccCceEEEeccccccccccchhhccccccC
Q 036454          143 DVFANLEELTLSKCIFTTWRQAQ-FHKLKILHFISDGSDFFQ-VGLLQNIHNLEKLVLSTCEYKKIFSCEEVEEHAEGIA  220 (410)
Q Consensus       143 ~~l~~L~~L~i~~~~~~~~~~~~-l~~L~~L~l~~~~~~~~~-~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~  220 (410)
                      ..+|.|+.|.++-|.+....+.. +.+|++|+++.+.+.++. ...+.++|+|+.|++..|........+--......+|
T Consensus        38 ~kMp~lEVLsLSvNkIssL~pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~LWL~ENPCc~~ag~nYR~~VLR~LP  117 (388)
T KOG2123|consen   38 EKMPLLEVLSLSVNKISSLAPLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTLWLDENPCCGEAGQNYRRKVLRVLP  117 (388)
T ss_pred             HhcccceeEEeeccccccchhHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhHhhccCCcccccchhHHHHHHHHcc
Confidence            66788899999988888887777 999999999666555444 4567899999999998864322211000111244579


Q ss_pred             cccEEEeC
Q 036454          221 QIKSLKLK  228 (410)
Q Consensus       221 ~L~~L~l~  228 (410)
                      ||+.|+=.
T Consensus       118 nLkKLDnv  125 (388)
T KOG2123|consen  118 NLKKLDNV  125 (388)
T ss_pred             cchhccCc
Confidence            99988743

>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=95.90  E-value=0.0039  Score=54.27  Aligned_cols=110  Identities=18%  Similarity=0.199  Sum_probs=61.5

Q ss_pred             cccCceEEEeccccccccccchhhccccccCcccEEEeCCcccccccccCCCCccccccccceEEEEecccccccccc--
Q 036454          190 IHNLEKLVLSTCEYKKIFSCEEVEEHAEGIAQIKSLKLKKLWLIEEHLWNPDSKLDSFLQNLEFLEVKKCALSLISLV--  267 (410)
Q Consensus       190 l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~l~~l~--  267 (410)
                      +..|+.|.+.++.+..+..       +-.+++||+|.++.-..   ....+-......+|+|++|++++|.  +..+.  
T Consensus        42 ~~~le~ls~~n~gltt~~~-------~P~Lp~LkkL~lsdn~~---~~~~~l~vl~e~~P~l~~l~ls~Nk--i~~lstl  109 (260)
T KOG2739|consen   42 FVELELLSVINVGLTTLTN-------FPKLPKLKKLELSDNYR---RVSGGLEVLAEKAPNLKVLNLSGNK--IKDLSTL  109 (260)
T ss_pred             ccchhhhhhhccceeeccc-------CCCcchhhhhcccCCcc---cccccceehhhhCCceeEEeecCCc--ccccccc
Confidence            3556666666555544433       44567778887776100   2221222334556888888888884  33211  


Q ss_pred             cCccccCccCEEEEcccC--CcccccchhhhhcCCCccEEEeccCcc
Q 036454          268 PSSASFRNLTVLKVCNCW--QLISLVTPQTAKTLVQLRELRVSECNR  312 (410)
Q Consensus       268 ~~~~~~~~L~~L~l~~c~--~l~~~~~~~~~~~l~~L~~L~l~~c~~  312 (410)
                      .....+.+|.+|++..|+  ++.+- .......+|+|..|+-..+..
T Consensus       110 ~pl~~l~nL~~Ldl~n~~~~~l~dy-re~vf~ll~~L~~LD~~dv~~  155 (260)
T KOG2739|consen  110 RPLKELENLKSLDLFNCSVTNLDDY-REKVFLLLPSLKYLDGCDVDG  155 (260)
T ss_pred             chhhhhcchhhhhcccCCccccccH-HHHHHHHhhhhccccccccCC
Confidence            224567778888887774  22222 123456677888777655433

>KOG3864 consensus Uncharacterized conserved protein [Function unknown]

Probab=95.83  E-value=0.00082  Score=56.14  Aligned_cols=69  Identities=16%  Similarity=0.202  Sum_probs=40.9

Q ss_pred             hhcCCCccEEEeccCcccchhccccCCCCccccccccceeecCcCcccceecCCCcccCCCCccEEEEecCCCC
Q 036454          296 AKTLVQLRELRVSECNRLEEIVANDGDADDEIVFSKLKWLFLESSESITSFCSGNYAFSFPSLEDLIVENCPKL  369 (410)
Q Consensus       296 ~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~l~~c~~l  369 (410)
                      +..+++++.|.+.+|....+.....-.    ..+++|+.|+|++|+++++-... ....+++|+.|.+++-+.+
T Consensus       121 L~~l~~i~~l~l~~ck~~dD~~L~~l~----~~~~~L~~L~lsgC~rIT~~GL~-~L~~lknLr~L~l~~l~~v  189 (221)
T KOG3864|consen  121 LRDLRSIKSLSLANCKYFDDWCLERLG----GLAPSLQDLDLSGCPRITDGGLA-CLLKLKNLRRLHLYDLPYV  189 (221)
T ss_pred             HhccchhhhheeccccchhhHHHHHhc----ccccchheeeccCCCeechhHHH-HHHHhhhhHHHHhcCchhh
Confidence            355666777777777666554322111    13677777777777777765432 1234677777777665554

>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]

Probab=95.80  E-value=0.017  Score=48.52  Aligned_cols=13  Identities=31%  Similarity=0.365  Sum_probs=7.2

Q ss_pred             hcCCCccEEEecc
Q 036454          297 KTLVQLRELRVSE  309 (410)
Q Consensus       297 ~~l~~L~~L~l~~  309 (410)
                      ..+|+|+.|+..+
T Consensus       137 ~klp~l~~LDF~k  149 (233)
T KOG1644|consen  137 YKLPSLRTLDFQK  149 (233)
T ss_pred             EecCcceEeehhh
Confidence            4555555555554

>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]

Probab=95.75  E-value=0.017  Score=48.43  Aligned_cols=56  Identities=21%  Similarity=0.250  Sum_probs=29.1

Q ss_pred             CcccEEEeccCcCccccCchhHHhhhhccceEeeccccCcceEeccCCCCCCCccccc-CCCccEEeeccC
Q 036454           47 RNLVVVRIFDCQSLKNIFPTSIARSLLRLETLSIKDCGSVEEIVANDGRGNDAATKFI-FPSLTFLRLRDL  116 (410)
Q Consensus        47 ~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~-l~~L~~L~l~~~  116 (410)
                      .+...++++++ .+..+...   ..++.|..|.+..+. +..+..         .+.. +++|..|.+.++
T Consensus        42 d~~d~iDLtdN-dl~~l~~l---p~l~rL~tLll~nNr-It~I~p---------~L~~~~p~l~~L~LtnN   98 (233)
T KOG1644|consen   42 DQFDAIDLTDN-DLRKLDNL---PHLPRLHTLLLNNNR-ITRIDP---------DLDTFLPNLKTLILTNN   98 (233)
T ss_pred             cccceeccccc-chhhcccC---CCccccceEEecCCc-ceeecc---------chhhhccccceEEecCc
Confidence            34555666655 23222222   355566666666554 555544         3333 356666666665

>KOG2123 consensus Uncharacterized conserved protein [Function unknown]

Probab=95.40  E-value=0.00075  Score=59.13  Aligned_cols=83  Identities=18%  Similarity=0.197  Sum_probs=45.9

Q ss_pred             ccCCcEEEecCccccccccccCCccccccCcccEEEeccCcCccccCchhHHhhhhccceEeeccccCcceEeccCCCCC
Q 036454           18 ATQLRELHVFHLPKLTKLWNKDPQGKLIFRNLVVVRIFDCQSLKNIFPTSIARSLLRLETLSIKDCGSVEEIVANDGRGN   97 (410)
Q Consensus        18 ~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~   97 (410)
                      +.+.+.|++.|| +++.+     +-+..|+.|..|.|+-+ .++.+.+.   ..|.+|++|+++.+. +..+..-+    
T Consensus        18 l~~vkKLNcwg~-~L~DI-----sic~kMp~lEVLsLSvN-kIssL~pl---~rCtrLkElYLRkN~-I~sldEL~----   82 (388)
T KOG2123|consen   18 LENVKKLNCWGC-GLDDI-----SICEKMPLLEVLSLSVN-KISSLAPL---QRCTRLKELYLRKNC-IESLDELE----   82 (388)
T ss_pred             HHHhhhhcccCC-CccHH-----HHHHhcccceeEEeecc-ccccchhH---HHHHHHHHHHHHhcc-cccHHHHH----
Confidence            556666777666 33332     11236777777777655 45555554   567777777776654 44433211    


Q ss_pred             CCcccccCCCccEEeeccCCC
Q 036454           98 DAATKFIFPSLTFLRLRDLPD  118 (410)
Q Consensus        98 ~~~~~~~l~~L~~L~l~~~~~  118 (410)
                         -+.++|+|+.|=|..++.
T Consensus        83 ---YLknlpsLr~LWL~ENPC  100 (388)
T KOG2123|consen   83 ---YLKNLPSLRTLWLDENPC  100 (388)
T ss_pred             ---HHhcCchhhhHhhccCCc
Confidence               234456666665555543

>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=94.91  E-value=0.012  Score=51.39  Aligned_cols=12  Identities=33%  Similarity=0.434  Sum_probs=6.9

Q ss_pred             CCCccEEeeccC
Q 036454          105 FPSLTFLRLRDL  116 (410)
Q Consensus       105 l~~L~~L~l~~~  116 (410)
                      +|+|+++.++++
T Consensus        90 ~P~l~~l~ls~N  101 (260)
T KOG2739|consen   90 APNLKVLNLSGN  101 (260)
T ss_pred             CCceeEEeecCC
Confidence            356666666555

>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]

Probab=92.51  E-value=0.016  Score=45.55  Aligned_cols=59  Identities=17%  Similarity=0.182  Sum_probs=34.1

Q ss_pred             ccccEEEeeccCcccccccc---cccccEEEEEeCCCccchhhhhhhcccCceEEEecccccc
Q 036454          146 ANLEELTLSKCIFTTWRQAQ---FHKLKILHFISDGSDFFQVGLLQNIHNLEKLVLSTCEYKK  205 (410)
Q Consensus       146 ~~L~~L~i~~~~~~~~~~~~---l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~  205 (410)
                      ..|...++++|.+..+++..   ++.++.|.+..+.+.+.|.+ +..++.|+.|+++.+.+..
T Consensus        53 ~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~neisdvPeE-~Aam~aLr~lNl~~N~l~~  114 (177)
T KOG4579|consen   53 YELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNEISDVPEE-LAAMPALRSLNLRFNPLNA  114 (177)
T ss_pred             ceEEEEecccchhhhCCHHHhhccchhhhhhcchhhhhhchHH-HhhhHHhhhcccccCcccc
Confidence            34555666666666554432   44555666655556666655 5666666666666655443

>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A

Probab=91.55  E-value=1.1  Score=35.05  Aligned_cols=61  Identities=20%  Similarity=0.227  Sum_probs=23.1

Q ss_pred             hhhhcccCceEEEeccccccccccchhhccccccCcccEEEeCCcccccccccCCCCccccccccceEEEEec
Q 036454          186 LLQNIHNLEKLVLSTCEYKKIFSCEEVEEHAEGIAQIKSLKLKKLWLIEEHLWNPDSKLDSFLQNLEFLEVKK  258 (410)
Q Consensus       186 ~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~L~~L~l~~  258 (410)
                      .+.++++|+.+.+.. .+..+..     ..+.++++|+.+.+..  .+ ..+   +...+..+++++.+.+.+
T Consensus         7 ~F~~~~~l~~i~~~~-~~~~I~~-----~~F~~~~~l~~i~~~~--~~-~~i---~~~~F~~~~~l~~i~~~~   67 (129)
T PF13306_consen    7 AFYNCSNLESITFPN-TIKKIGE-----NAFSNCTSLKSINFPN--NL-TSI---GDNAFSNCKSLESITFPN   67 (129)
T ss_dssp             TTTT-TT--EEEETS-T--EE-T-----TTTTT-TT-SEEEESS--TT-SCE----TTTTTT-TT-EEEEETS
T ss_pred             HHhCCCCCCEEEECC-CeeEeCh-----hhcccccccccccccc--cc-ccc---ceeeeecccccccccccc
Confidence            345555666666553 2223222     2344555566666654  12 222   112344555566666643

>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]

Probab=90.32  E-value=0.034  Score=43.84  Aligned_cols=87  Identities=14%  Similarity=0.197  Sum_probs=54.1

Q ss_pred             cceEEEEecccccc--cccccCccccCccCEEEEcccCCcccccchhhhhcCCCccEEEeccCcccchhccccCCCCccc
Q 036454          250 NLEFLEVKKCALSL--ISLVPSSASFRNLTVLKVCNCWQLISLVTPQTAKTLVQLRELRVSECNRLEEIVANDGDADDEI  327 (410)
Q Consensus       250 ~L~~L~l~~~~~~l--~~l~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~  327 (410)
                      .+..+++++|. .+  .+.+.....-..|+..++++. .+.+++. .....+|.++.|++.+ +.+.++|..++.     
T Consensus        28 E~h~ldLssc~-lm~i~davy~l~~~~el~~i~ls~N-~fk~fp~-kft~kf~t~t~lNl~~-neisdvPeE~Aa-----   98 (177)
T KOG4579|consen   28 ELHFLDLSSCQ-LMYIADAVYMLSKGYELTKISLSDN-GFKKFPK-KFTIKFPTATTLNLAN-NEISDVPEELAA-----   98 (177)
T ss_pred             Hhhhcccccch-hhHHHHHHHHHhCCceEEEEecccc-hhhhCCH-HHhhccchhhhhhcch-hhhhhchHHHhh-----
Confidence            45556677774 11  122233334455666777664 4666653 4456677788888876 577788877777     


Q ss_pred             cccccceeecCcCcccceec
Q 036454          328 VFSKLKWLFLESSESITSFC  347 (410)
Q Consensus       328 ~~~~L~~L~l~~c~~l~~~~  347 (410)
                       +|.|+.|++++.+ +...+
T Consensus        99 -m~aLr~lNl~~N~-l~~~p  116 (177)
T KOG4579|consen   99 -MPALRSLNLRFNP-LNAEP  116 (177)
T ss_pred             -hHHhhhcccccCc-cccch
Confidence             8888888888743 44443

>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D

Probab=90.31  E-value=0.2  Score=23.98  Aligned_cols=11  Identities=27%  Similarity=0.262  Sum_probs=4.8

Q ss_pred             CccEEEEecCC
Q 036454          357 SLEDLIVENCP  367 (410)
Q Consensus       357 ~L~~L~l~~c~  367 (410)
                      +|+.|++++|.
T Consensus         2 ~L~~L~l~~n~   12 (17)
T PF13504_consen    2 NLRTLDLSNNR   12 (17)
T ss_dssp             T-SEEEETSS-
T ss_pred             ccCEEECCCCC
Confidence            45555555553

...

>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A

Probab=90.14  E-value=1.6  Score=34.05  Aligned_cols=58  Identities=16%  Similarity=0.158  Sum_probs=24.0

Q ss_pred             ccCcccEEEeccCcCccccCchhHHhhhhccceEeeccccCcceEeccCCCCCCCcccccCCCccEEeecc
Q 036454           45 IFRNLVVVRIFDCQSLKNIFPTSIARSLLRLETLSIKDCGSVEEIVANDGRGNDAATKFIFPSLTFLRLRD  115 (410)
Q Consensus        45 ~l~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~  115 (410)
                      .+.+|+.+.+..  .+..+....+ .++++|+++.+.+.  +..++..        ....+++|+.+.+..
T Consensus        10 ~~~~l~~i~~~~--~~~~I~~~~F-~~~~~l~~i~~~~~--~~~i~~~--------~F~~~~~l~~i~~~~   67 (129)
T PF13306_consen   10 NCSNLESITFPN--TIKKIGENAF-SNCTSLKSINFPNN--LTSIGDN--------AFSNCKSLESITFPN   67 (129)
T ss_dssp             T-TT--EEEETS--T--EE-TTTT-TT-TT-SEEEESST--TSCE-TT--------TTTT-TT-EEEEETS
T ss_pred             CCCCCCEEEECC--CeeEeChhhc-cccccccccccccc--cccccee--------eeecccccccccccc
Confidence            455666666652  2344433332 45666666666542  5555431        333444566666643

>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]

Probab=87.70  E-value=0.25  Score=43.71  Aligned_cols=203  Identities=13%  Similarity=0.040  Sum_probs=99.5

Q ss_pred             cccccccCCcEEEecCccc--cc-cccc---cCCccccccCcccEEEeccCcCccccCc--hhHHhhhhccceEeecccc
Q 036454           13 THSGAATQLRELHVFHLPK--LT-KLWN---KDPQGKLIFRNLVVVRIFDCQSLKNIFP--TSIARSLLRLETLSIKDCG   84 (410)
Q Consensus        13 ~~~~~~~~L~~L~l~~~~~--l~-~~~~---~~~~~~~~l~~L~~L~l~~~~~l~~~~~--~~~~~~l~~L~~L~l~~~~   84 (410)
                      ..+.+-.+|+..++++.-.  .. ++..   ....-+-.+|+|+..+++++..-...++  ..+..+-..|++|.+++|.
T Consensus        52 ~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~NnG  131 (388)
T COG5238          52 NVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNNG  131 (388)
T ss_pred             HHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccCcccchHHHHHHhcCCCceeEEeecCC
Confidence            3466678888888887311  00 1100   0011223789999999998843222221  1233566789999999886


Q ss_pred             CcceEeccCCC------CCCCcccccCCCccEEeeccCCCccccccCcccCCCCCceEEEEccCCccccccEEEeeccCc
Q 036454           85 SVEEIVANDGR------GNDAATKFIFPSLTFLRLRDLPDLTTFYSGMHILECPELRKLEVNHVDVFANLEELTLSKCIF  158 (410)
Q Consensus        85 ~l~~~~~~~~~------~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~l~~L~~L~i~~~~~  158 (410)
                       +..+..+..+      +.. ..+..=|.|+......+ .+...+....+..+           ..-..|+++.+..|.+
T Consensus       132 -lGp~aG~rigkal~~la~n-KKaa~kp~Le~vicgrN-Rlengs~~~~a~~l-----------~sh~~lk~vki~qNgI  197 (388)
T COG5238         132 -LGPIAGGRIGKALFHLAYN-KKAADKPKLEVVICGRN-RLENGSKELSAALL-----------ESHENLKEVKIQQNGI  197 (388)
T ss_pred             -CCccchhHHHHHHHHHHHH-hhhccCCCceEEEeccc-hhccCcHHHHHHHH-----------HhhcCceeEEeeecCc
Confidence             4433321000      000 01122366777766655 44333322111000           0002445555555444


Q ss_pred             cccc-----ccc---cccccEEEEEeCCCccc----hhhhhhhcccCceEEEeccccccccccchh-hccccccCcccEE
Q 036454          159 TTWR-----QAQ---FHKLKILHFISDGSDFF----QVGLLQNIHNLEKLVLSTCEYKKIFSCEEV-EEHAEGIAQIKSL  225 (410)
Q Consensus       159 ~~~~-----~~~---l~~L~~L~l~~~~~~~~----~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~-~~~~~~l~~L~~L  225 (410)
                      ..-.     ...   +.+|+.|++..+..+..    ....++..+.|+.|.+..|-+..-....+. .......|+|..|
T Consensus       198 rpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~~lrEL~lnDClls~~G~~~v~~~f~e~~~p~l~~L  277 (388)
T COG5238         198 RPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWNLLRELRLNDCLLSNEGVKSVLRRFNEKFVPNLMPL  277 (388)
T ss_pred             CcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcccchhhhccccchhhccccHHHHHHHhhhhcCCCcccc
Confidence            3210     001   66788888844333322    223456678899999988843322110000 0012345888888


Q ss_pred             EeCC
Q 036454          226 KLKK  229 (410)
Q Consensus       226 ~l~~  229 (410)
                      ...-
T Consensus       278 ~~~Y  281 (388)
T COG5238         278 PGDY  281 (388)
T ss_pred             ccch
Confidence            7654

>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]

Probab=87.45  E-value=0.72  Score=40.92  Aligned_cols=14  Identities=14%  Similarity=0.176  Sum_probs=8.9

Q ss_pred             ccccEEEeeccCcc
Q 036454          146 ANLEELTLSKCIFT  159 (410)
Q Consensus       146 ~~L~~L~i~~~~~~  159 (410)
                      |.|+......|+..
T Consensus       157 p~Le~vicgrNRle  170 (388)
T COG5238         157 PKLEVVICGRNRLE  170 (388)
T ss_pred             CCceEEEeccchhc
Confidence            66677666666653

>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=87.14  E-value=0.45  Score=24.47  Aligned_cols=9  Identities=33%  Similarity=0.682  Sum_probs=4.3

Q ss_pred             ceEEEEecc
Q 036454          251 LEFLEVKKC  259 (410)
Q Consensus       251 L~~L~l~~~  259 (410)
                      |++|++++|
T Consensus         2 L~~Ldls~n   10 (22)
T PF00560_consen    2 LEYLDLSGN   10 (22)
T ss_dssp             ESEEEETSS
T ss_pred             ccEEECCCC
Confidence            444444444

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....

>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily

Probab=85.99  E-value=0.46  Score=25.57  Aligned_cols=17  Identities=29%  Similarity=0.231  Sum_probs=9.2

Q ss_pred             cccceeecCcCccccee
Q 036454          330 SKLKWLFLESSESITSF  346 (410)
Q Consensus       330 ~~L~~L~l~~c~~l~~~  346 (410)
                      ++|+.|+|++|+.+++.
T Consensus         2 ~~L~~L~l~~C~~itD~   18 (26)
T smart00367        2 PNLRELDLSGCTNITDE   18 (26)
T ss_pred             CCCCEeCCCCCCCcCHH
Confidence            45555555555555543

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	410
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	9e-10
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	4e-06
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	7e-06
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	4e-08
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	5e-05
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	1e-07
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	1e-05
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	2e-05
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	9e-06
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	4e-05
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	5e-05
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	5e-05
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	3e-04

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Length = 592

 Score = 59.6 bits (144), Expect = 9e-10
 Identities = 53/378 (14%), Positives = 111/378 (29%), Gaps = 73/378 (19%)

Query: 52  VRIFDCQSLKNIFPTSIARSLLRLETLSIKDCGSVEE---IVANDGRGNDAATKFIFPSL 108
           V +  C +     P  ++R    L +L +K          I  N G         I  +L
Sbjct: 55  VTMALCYT---ATPDRLSRRFPNLRSLKLKGKPRAAMFNLIPENWGGYVTPWVTEISNNL 111

Query: 109 TFLRLRDLPDLTTFYSGMHIL---ECPELRKLEVNHVDVF------------ANLEELTL 153
             L+      +      +  L      +L  L+++    F              ++ L +
Sbjct: 112 RQLKSVHFRRMIVSDLDLDRLAKARADDLETLKLDKCSGFTTDGLLSIVTHCRKIKTLLM 171

Query: 154 SKCIFTTWRQAQFH-------KLKILHFISDG----SDFFQVGLLQNIHNLEKLVLSTCE 202
            +  F+       H        L++L+F        S      + +N  +L  + +   E
Sbjct: 172 EESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFE 231

Query: 203 Y------------------KKIFSCEEVEEHAEGIAQIKSLKLKKLWLIEEHLWNPDSKL 244
                                +     + E    +   + L    L  +     N    L
Sbjct: 232 ILELVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMG---PNEMPIL 288

Query: 245 DSFLQNLEFLEVKKCALSLISLVPSSASFRNLTVLKVCNCWQLISLVTPQTAKTLVQLRE 304
             F   +  L++    L             NL VL+  N      L     A+   QL+ 
Sbjct: 289 FPFAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETRNVIGDRGLE--VLAQYCKQLKR 346

Query: 305 LRVSECNRLEEIVANDGDADDEIVFS------KLKWLFL-------ESSESITSFCSGNY 351
           LR+      + +   +G      + +      +L+++ +       ES ESI ++     
Sbjct: 347 LRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSDITNESLESIGTYLK--- 403

Query: 352 AFSFPSLEDLIVENCPKL 369
             +      ++++   ++
Sbjct: 404 --NLCDFRLVLLDREERI 419

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Length = 592

 Score = 48.0 bits (114), Expect = 4e-06
 Identities = 40/340 (11%), Positives = 88/340 (25%), Gaps = 62/340 (18%)

Query: 5   LQEVNSEETHSGAATQLRELHVFHLPKLTKLWNKD------PQGKLIFRNLVVVRIFDCQ 58
           L+E      +       + +++    KL +L          P        +  + +    
Sbjct: 245 LEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGPNEMPILFPFAAQIRKLDLLYAL 304

Query: 59  SLKNIFPTSIARSLLRLETLSIKDC---GSVEEIVANDGRGNDAATKFIFPSLTFLRLRD 115
                   ++ +    LE L  ++      +E +                  L  LR+  
Sbjct: 305 LETEDH-CTLIQKCPNLEVLETRNVIGDRGLEVLAQY------------CKQLKRLRIER 351

Query: 116 LPDLTTFYSGMHILE----------CPELRKLEVNHVDV-----------FANLEELTLS 154
             D         ++           C EL  + V   D+             NL +  L 
Sbjct: 352 GADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSDITNESLESIGTYLKNLCDFRLV 411

Query: 155 KCIFTTWRQAQFHKLKILHFISDGSDFFQVGLLQNIHNLEKLVLSTCEYKKIFSCEEVEE 214
                          +         D     LL     L +      +     +   +  
Sbjct: 412 LL------------DREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGG--LTDLGLSY 457

Query: 215 HAEGIAQIKSLKLKKLWLIEEHLWNPDSKLDSFLQNLEFLEVKKCALSLISLVPSSASFR 274
             +    ++ + L  +   +E L     +      NL+ LE++ C  S  ++  +     
Sbjct: 458 IGQYSPNVRWMLLGYVGESDEGL----MEFSRGCPNLQKLEMRGCCFSERAIAAAVTKLP 513

Query: 275 NLTVLKVCNCWQLISLVTP-QTAKTLVQLRELRVSECNRL 313
           +L  L V      ++     Q A+    +  +       +
Sbjct: 514 SLRYLWVQGYRASMTGQDLMQMARPYWNIELIPSRRVPEV 553

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Length = 592

 Score = 47.2 bits (112), Expect = 7e-06
 Identities = 45/338 (13%), Positives = 99/338 (29%), Gaps = 59/338 (17%)

Query: 52  VRIFDCQSLKNIFPTSIARSLLRLETLSIKDCGSVEEIVANDGRGNDAATKFIFPSLTFL 111
             + +   +      +IAR+   L ++ + D   +E                   +L   
Sbjct: 199 FYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILE----------LVGFFKAAANLEEF 248

Query: 112 RLRDL-PDLTTFYSGMHILECPELRKLEVNHVD---------VFANLEELTLSKCIFTT- 160
               L  D+      M+++   +L +L ++++            A + +L L   +  T 
Sbjct: 249 CGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGPNEMPILFPFAAQIRKLDLLYALLETE 308

Query: 161 ---WRQAQFHKLKILHFISDGSDFFQVGLLQNIHNLEKLVLSTCEYKKIFSCEEVEEHAE 217
                  +   L++L   +   D     L Q    L++L +     ++    EE      
Sbjct: 309 DHCTLIQKCPNLEVLETRNVIGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQR 368

Query: 218 GIAQIKSLKLKKLWLIEEHLWNPDSKLDSFLQNLEFLEVKKCALSLISLVPSSASFRNLT 277
           G+  +                          Q LE++ V    ++  SL       +NL 
Sbjct: 369 GLIALAQG----------------------CQELEYMAVYVSDITNESLESIGTYLKNLC 406

Query: 278 VLKVCNCWQLISLVTPQTAKTLVQLRELRVSECNRLEEIVANDGDA---DDEIVF----- 329
             ++             T   L       +  C +L             D  + +     
Sbjct: 407 DFRLVLL----DREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYS 462

Query: 330 SKLKWLFLESSESITSFCSGNYAFSFPSLEDLIVENCP 367
             ++W+ L      +      ++   P+L+ L +  C 
Sbjct: 463 PNVRWMLL-GYVGESDEGLMEFSRGCPNLQKLEMRGCC 499

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 53.8 bits (130), Expect = 4e-08
 Identities = 42/251 (16%), Positives = 79/251 (31%), Gaps = 43/251 (17%)

Query: 147 NLEELTLSKCIFTTWRQAQFHKLKILHFISDGSDFFQVGLLQNIHNLEKLVLSTCEYKKI 206
             E L                + +  H+ +D + +       N +N +    +       
Sbjct: 13  GRENLYFQGSTALRPYHDVLSQWQ-RHYNADRNRWHSAWRQANSNNPQIETRT------- 64

Query: 207 FSCEEVEEHAEGIAQIKSLKLKKLWLIEEHLWN-PDSKLDSFLQNLEFLEVKKCALSLIS 265
                ++  A+ +          L L    L   PD      L +L+ + +      L+ 
Sbjct: 65  --GRALKATADLLEDATQPGRVALELRSVPLPQFPDQAFR--LSHLQHMTIDAA--GLME 118

Query: 266 LVPSSASFRNLTVLKVCNCWQLISLVTPQTAKTLVQLRELRVSECNRLEEI---VANDGD 322
           L  +   F  L  L +     L +L  P +  +L +LREL +  C  L E+   +A+   
Sbjct: 119 LPDTMQQFAGLETLTLARN-PLRAL--PASIASLNRLRELSIRACPELTELPEPLASTDA 175

Query: 323 ADDEIVFSKLKWLFLESSESITSF--------------CSGNYAFSFP-------SLEDL 361
           + +      L+ L LE +  I S                  +   +          LE+L
Sbjct: 176 SGEHQGLVNLQSLRLEWT-GIRSLPASIANLQNLKSLKIRNSPLSALGPAIHHLPKLEEL 234

Query: 362 IVENCPKLNTF 372
            +  C  L  +
Sbjct: 235 DLRGCTALRNY 245

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 43.8 bits (104), Expect = 5e-05
 Identities = 24/126 (19%), Positives = 48/126 (38%), Gaps = 18/126 (14%)

Query: 248 LQNLEFLEVKKCALSLISLVPSSASFRNLTVLKVCNCWQLISLVTPQTAKTLVQLRELRV 307
           LQNL+ L+++     L +L P+      L  L +  C  L +   P        L+ L +
Sbjct: 205 LQNLKSLKIRNS--PLSALGPAIHHLPKLEELDLRGCTALRNY--PPIFGGRAPLKRLIL 260

Query: 308 SECNRLEEIVANDGDADDEIV-FSKLKWLFLESSESITSFCS--GNYAFSFPSLEDLIVE 364
            +C+ L  +         +I   ++L+ L L    +++   S         P+   ++V 
Sbjct: 261 KDCSNLLTL-------PLDIHRLTQLEKLDLRGCVNLSRLPSLIAQ----LPANCIILVP 309

Query: 365 NCPKLN 370
              +  
Sbjct: 310 PHLQAQ 315

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Length = 594

 Score = 53.0 bits (127), Expect = 1e-07
 Identities = 69/405 (17%), Positives = 121/405 (29%), Gaps = 53/405 (13%)

Query: 26  VFHLPKLTKLWNKDPQGKLIFRNLVVVRIFDCQSLKNIFPTSIARSLLRLETLSIKDCGS 85
           +   PK+  +   + +GK  F +  +V           +  +++ S   LE + +K    
Sbjct: 62  IRRFPKVRSV---ELKGKPHFADFNLVPD-GWGGYVYPWIEAMSSSYTWLEEIRLKRMVV 117

Query: 86  VEEIVANDGRGNDAATKFIFPSLTFLRLRDLPDLTTFYSGMHIL--ECPELRKLEVNHVD 143
            ++ +    +         F +   L L      +T   G+  +   C  L++L++   D
Sbjct: 118 TDDCLELIAKS--------FKNFKVLVLSSCEGFST--DGLAAIAATCRNLKELDLRESD 167

Query: 144 V--------------FANLEELTLSKCIFTTWRQA------QFHKLKILHFISDGSDFFQ 183
           V              + +L  L +S         A      +   LK L           
Sbjct: 168 VDDVSGHWLSHFPDTYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAVPLEKL 227

Query: 184 VGLLQNIHNLEKLVLSTCEYKKIFSCEEVEEHAEGIAQIKSLKLKKLWLIEEHLWNPDSK 243
             LLQ    LE+L              +V             +L+ L    + +      
Sbjct: 228 ATLLQRAPQLEELGTGGY---TAEVRPDVYSGLSVALS-GCKELRCLSGFWDAVPAYLPA 283

Query: 244 LDSFLQNLEFLEVKKCALSLISLVPSSASFRNLTVLKVCNCWQLISLVTPQTAKTLVQLR 303
           + S    L  L +    +    LV        L  L V +  +   L     A T   LR
Sbjct: 284 VYSVCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDYIEDAGLEV--LASTCKDLR 341

Query: 304 ELRVSECNRL-EEIVANDGDADDEIVFSKLKWLFLESSESITSFCSGNYAFSFPSLEDLI 362
           ELRV        E      +     V      L     ES+  FC      +  +L  + 
Sbjct: 342 ELRVFPSEPFVMEPNVALTEQGLVSVSMGCPKL-----ESVLYFCRQ---MTNAALITI- 392

Query: 363 VENCPKLNTFSAGVLKTPRLQAVQNWELGEDFWA-GDVNTTLQHL 406
             N P +  F   +++      +    L   F A  +    L+ L
Sbjct: 393 ARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRL 437

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Length = 594

 Score = 46.0 bits (109), Expect = 1e-05
 Identities = 45/302 (14%), Positives = 92/302 (30%), Gaps = 26/302 (8%)

Query: 18  ATQLRELHVFHLPKLTKLWNKDPQGKLIFRNLVVVRIFD-CQSLKNIFPTSIARSLLRLE 76
           A QL EL            +      +       +R           +  ++     RL 
Sbjct: 234 APQLEELGTGGYTAEV-RPDVYSGLSVALSGCKELRCLSGFWDAVPAYLPAVYSVCSRLT 292

Query: 77  TLSIKDCGSVEEIVANDGRGNDAATKFIFPSLTFLRLRDLPDLTTFYSGMHILE-CPELR 135
           TL++                       +      L+   + D         +   C +LR
Sbjct: 293 TLNLSYA-----------TVQSYDLVKLLCQCPKLQRLWVLDYIEDAGLEVLASTCKDLR 341

Query: 136 KLEVNHVDVFANLEELTLS----KCIFTTWRQAQFHKLKILHFISDGSDFFQVGLLQNIH 191
           +L V   + F     + L+      +     + +     +L+F    ++   + + +N  
Sbjct: 342 ELRVFPSEPFVMEPNVALTEQGLVSVSMGCPKLE----SVLYFCRQMTNAALITIARNRP 397

Query: 192 NLEKLVLSTCEYKKIFSCEEVEEHAEGIAQIKSL--KLKKLWLIEEHLWNPDSKLDSFLQ 249
           N+ +  L   E  K      +E    G   I      L++L L           + ++ +
Sbjct: 398 NMTRFRLCIIE-PKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSGLLTDKVFEYIGTYAK 456

Query: 250 NLEFLEVKKCALSLISLVPSSASFRNLTVLKVCNCWQLISLVTPQTAKTLVQLRELRVSE 309
            +E L V     S + +    +   +L  L++ +C           A  L  +R L +S 
Sbjct: 457 KMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCP-FGDKALLANASKLETMRSLWMSS 515

Query: 310 CN 311
           C+
Sbjct: 516 CS 517

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Length = 594

 Score = 45.7 bits (108), Expect = 2e-05
 Identities = 32/224 (14%), Positives = 77/224 (34%), Gaps = 23/224 (10%)

Query: 161 WRQAQFHKLKILHFISDGSDFFQVGLLQNIHNLEKLVLSTCEYKKIFSCEEVEEHAEGIA 220
           W + +    + + FI +        +++    +  + L    +   F+            
Sbjct: 37  WYEIERWCRRKV-FIGNCYAVSPATVIRRFPKVRSVELKGKPHFADFNLVPDGWGGYVYP 95

Query: 221 QIKSLKLKKLWLIEEHLWNPDSKLDSFLQNLEFLEVKKCALSLISLVPSSASFRNLTVLK 280
            I+++                    S    LE + +K+  ++   L   + SF+N  VL 
Sbjct: 96  WIEAMS-------------------SSYTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLV 136

Query: 281 VCNCWQLISLVTPQTAKTLVQLRELRVSECNRLEEIVANDGDADDEIVFSKLKWLFLES- 339
           + +C    +      A T   L+EL + E +  +  V+    +     ++ L  L +   
Sbjct: 137 LSSCEGFSTDGLAAIAATCRNLKELDLRESDVDD--VSGHWLSHFPDTYTSLVSLNISCL 194

Query: 340 SESITSFCSGNYAFSFPSLEDLIVENCPKLNTFSAGVLKTPRLQ 383
           +  ++           P+L+ L +     L   +  + + P+L+
Sbjct: 195 ASEVSFSALERLVTRCPNLKSLKLNRAVPLEKLATLLQRAPQLE 238

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 46.7 bits (111), Expect = 9e-06
 Identities = 43/275 (15%), Positives = 84/275 (30%), Gaps = 29/275 (10%)

Query: 108 LTFLRLRDLPDLTTFYSGMHILECPELRKLEVNHVDVFA-----NLEELTLSKCIFTTWR 162
           L+   +  L      +  +  L+   L   ++N +   A     NL+ L LS  +     
Sbjct: 273 LSHGFVFSLNSRV--FETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELY 330

Query: 163 QAQF---HKLKILHFISDGSDFFQVGLLQNIHNLEKLVLSTCEYKKIFSCEEVEEHAEGI 219
            + F    K+  +    +     Q    + +  L+ L L       I     + +     
Sbjct: 331 SSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALTTIHFIPSIPDIFLSG 390

Query: 220 AQIKSLKLKKLWLIEEHL-WNPDSKLD--SFLQNLEFLEVKKCALSLISLVPSSASFRNL 276
            ++ +L    L     HL  N    LD   FL  +  L++     +  S      +    
Sbjct: 391 NKLVTLPKINLTANLIHLSENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQTPSEN 450

Query: 277 TVLKVCNC------WQLISLVTPQTAKTLVQLRELRVSECNRLEEIVANDGDADDEIVFS 330
             L+              + +     + L  L+ L ++  N L  +             +
Sbjct: 451 PSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNH-NYLNSL-----PPGVFSHLT 504

Query: 331 KLKWLFLESSESITSFCSGNYAFSFPSLEDLIVEN 365
            L+ L L +S  +T            +LE L +  
Sbjct: 505 ALRGLSL-NSNRLTVLSHN---DLPANLEILDISR 535

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 44.7 bits (106), Expect = 4e-05
 Identities = 67/371 (18%), Positives = 131/371 (35%), Gaps = 45/371 (12%)

Query: 19  TQLRELHVFHLPKLTKLWNKDPQGKLIFRNLVVVRIFDCQS--LKNIFPTSIARSLLRLE 76
           T L+ L + ++   +++   D      F  L  +   + ++  L+N    S+  S+  + 
Sbjct: 123 TNLQTLRIGNVETFSEIRRID------FAGLTSLNELEIKALSLRNYQSQSLK-SIRDIH 175

Query: 77  TLSIKDCGSVEEIVANDGRGNDAATKFIFPSLTFLRLRDLPDLTTFYSGMHILECPELRK 136
            L++        ++                S+ +L LRD       +S + + E     K
Sbjct: 176 HLTLHLS-ESAFLLEIFADI--------LSSVRYLELRDTNLARFQFSPLPVDEVSSPMK 226

Query: 137 LEVNHVDVFANLEELTLSKCIFTTWRQAQFHKLKILHFISDGSDFFQVGLLQNIHNLEKL 196
                  V  +     L K +       +  +++      +G   F       +  L K+
Sbjct: 227 KLAFRGSVLTDESFNELLKLLRYIL---ELSEVEFDDCTLNGLGDFNPSESDVVSELGKV 283

Query: 197 VLSTCEYKKIFSCEEVEEHAEGIAQIKSLKLKKLWLIEEHLWNPDSKLDSFLQNLEFLEV 256
              T     I       + +   + ++  K+K++ +    ++         L++LEFL++
Sbjct: 284 ETVTIRRLHIPQFYLFYDLSTVYSLLE--KVKRITVENSKVFLVPCSFSQHLKSLEFLDL 341

Query: 257 KKCALSLISLVPSSASFRNLTVLKVCNCW--QLISL-VTPQTAKTLVQLRELRVSECNRL 313
            +  +    L  +SA       L+        L S+  T +   TL  L  L +S  N  
Sbjct: 342 SENLMVEEYL-KNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISR-NTF 399

Query: 314 EEIVANDGDADDEIVF-SKLKWLFLESSESITSFCSGNYAFSFPSLEDLIVENCPKLNTF 372
             +        D   +  K+++L L SS  I    +        +LE L V N   L++F
Sbjct: 400 HPM-------PDSCQWPEKMRFLNL-SSTGIRVVKTCI----PQTLEVLDVSNN-NLDSF 446

Query: 373 SAGVLKTPRLQ 383
           S      PRLQ
Sbjct: 447 SLF---LPRLQ 454

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A Length = 336

 Score = 44.1 bits (104), Expect = 5e-05
 Identities = 30/165 (18%), Positives = 54/165 (32%), Gaps = 22/165 (13%)

Query: 46  FRNLVVVRIFDCQSLKNIFPTSIARSLLRLETLSIKDCGSVEEIVANDGRGNDAATKFIF 105
             NLV + +  C         ++  S  RL+ L++  C    E      +    A   + 
Sbjct: 141 NSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTE------KHVQVAVAHVS 194

Query: 106 PSLTFLRLRDLPDLTTFYSGMHILE-CPELRKLEVNH--------VDVFA---NLEELTL 153
            ++T L L              ++  CP L  L+++            F     L+ L+L
Sbjct: 195 ETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSL 254

Query: 154 SKCIFTTWRQ----AQFHKLKILHFISDGSDFFQVGLLQNIHNLE 194
           S+C            +   LK L       D     L + + +L+
Sbjct: 255 SRCYDIIPETLLELGEIPTLKTLQVFGIVPDGTLQLLKEALPHLQ 299

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 44.8 bits (105), Expect = 5e-05
 Identities = 55/366 (15%), Positives = 96/366 (26%), Gaps = 113/366 (30%)

Query: 32  LTKLWNK------DPQGKLIF--RNLVVVRIFDCQSLKNIFPTSIARSLLRLETLSIKDC 83
           L  + N       +   K++   R   V       +  +I     + +L   E  S+   
Sbjct: 250 LLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSL--L 307

Query: 84  GSVEEIVANDGRGNDAATKFIFP---SLTFLRLRDLPDLTTFY-------------SGMH 127
               +    D            P   S+    +RD       +             S ++
Sbjct: 308 LKYLDCRPQDLP--REVLT-TNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLN 364

Query: 128 ILECPELRKLEVNHVDVF---ANLEELTLSKCIFTTWRQ----------AQFHKLKILHF 174
           +LE  E RK+      VF   A++  + L   +   W             + HK  ++  
Sbjct: 365 VLEPAEYRKMFDRLS-VFPPSAHIPTILL--SLI--WFDVIKSDVMVVVNKLHKYSLV-- 417

Query: 175 ISDGSDFFQVGLLQNIHNLEKLVLSTCEYKKIFSCEEVEEHAEGIAQ---IKSLKLKKL- 230
                +        +I ++   +    E        E   H   +      K+     L 
Sbjct: 418 EKQPKES-----TISIPSIYLELKVKLE-------NEYALHRSIVDHYNIPKTFDSDDLI 465

Query: 231 ---------WLIEEHLWN--PDSKLDSF---LQNLEFLEVKKCALSLISLVPSSASFRNL 276
                      I  HL N     ++  F     +  FLE K                   
Sbjct: 466 PPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQK------------------- 506

Query: 277 TVLKVCNCWQLISLVTPQTAKTLVQLRELRVSECNRLEEIVANDGDADDEIVFSKLKWLF 336
            +      W     +      TL QL+  +         I  ND    + +V + L   F
Sbjct: 507 -IRHDSTAWNASGSILN----TLQQLKFYK-------PYICDNDPK-YERLVNAILD--F 551

Query: 337 LESSES 342
           L   E 
Sbjct: 552 LPKIEE 557

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 42.1 bits (98), Expect = 3e-04
 Identities = 57/402 (14%), Positives = 102/402 (25%), Gaps = 123/402 (30%)

Query: 34  KLWNKDPQGKLIFRNLVVVRIFDCQSLKNIFPTSIARSLLRLETLSIKDCGSVEEIVAND 93
           +L+N D Q   +F    V R+     L+         +LL L            + V  D
Sbjct: 118 RLYN-DNQ---VFAKYNVSRLQPYLKLRQ--------ALLELR---------PAKNVLID 156

Query: 94  GRGNDAATKFIFPSLTFLRLRDLPDLTTFYSGMHILECPELRKLEVNHVDVFANLEELTL 153
           G      T      +                 +  L        E     V   L+   L
Sbjct: 157 GVLGSGKT-----WVALDVCLSYKVQCKMDFKIFWLNLKNCNSPE----TVLEMLQ--KL 205

Query: 154 SKCIFTTWRQAQFHKLKILHFISDGSDFFQVGLLQNIHNLEKLVLSTCEYKKI-----FS 208
              I   W     H   I   I       +  L    +    LVL   +  K       S
Sbjct: 206 LYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLS 265

Query: 209 C----------------------EEVEEHAEGIAQIKSLKL--KKLWLIEEHL------- 237
           C                        ++ H+  +   +   L  K L    + L       
Sbjct: 266 CKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTT 325

Query: 238 ------------------WNP---------DSKLDSFLQNLEFLEVKKC--ALSLI---S 265
                             W+           + ++S L  LE  E +K    LS+    +
Sbjct: 326 NPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSA 385

Query: 266 LVPSSASFRNLTVLKVCNCWQLISLVTPQTAKTLVQLRELRVSECNRLEEIVA-NDGDAD 324
            +P+      L+++     W  +          + +L +  + E    E  ++      +
Sbjct: 386 HIPTIL----LSLI-----WFDVIKSDVM--VVVNKLHKYSLVEKQPKESTISIPSIYLE 434

Query: 325 DEIVFSKLKWL---FLESSESITSFCSG--------NYAFSF 355
            ++       L    ++      +F S          Y +S 
Sbjct: 435 LKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSH 476

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	410
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	99.95
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	99.94
1o6v_A	466	Internalin A; bacterial infection, extracellular r	99.94
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	99.93
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	99.93
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	99.93
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	99.93
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	99.93
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	99.93
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	99.93
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	99.93
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	99.92
1o6v_A	466	Internalin A; bacterial infection, extracellular r	99.92
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	99.92
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	99.92
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	99.92
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	99.91
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	99.91
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	99.91
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	99.91
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	99.91
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	99.91
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	99.91
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	99.91
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	99.9
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	99.9
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	99.9
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	99.9
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	99.9
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	99.9
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	99.9
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	99.9
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	99.89
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	99.89
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	99.88
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	99.88
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	99.86
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	99.86
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	99.85
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	99.84
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	99.84
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	99.83
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	99.83
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	99.83
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	99.83
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	99.83
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	99.82
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	99.81
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	99.81
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	99.8
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	99.8
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	99.8
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	99.8
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	99.79
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	99.79
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	99.79
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	99.78
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	99.76
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	99.76
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	99.75
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	99.75
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	99.75
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	99.74
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	99.74
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	99.73
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	99.73
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	99.73
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	99.71
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	99.7
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	99.69
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	99.64
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	99.64
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	99.62
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	99.62
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	99.62
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	99.6
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	99.6
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	99.6
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	99.6
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	99.59
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	99.59
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	99.59
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	99.59
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	99.56
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	99.56
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	99.56
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	99.56
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	99.55
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	99.49
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	99.47
3m19_A	251	Variable lymphocyte receptor A diversity region; a	99.43
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	99.43
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	99.42
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	99.42
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	99.41
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	99.4
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	99.4
3m19_A	251	Variable lymphocyte receptor A diversity region; a	99.39
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	99.39
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	99.38
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	99.36
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	99.35
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	99.23
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	99.2
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	99.18
3e6j_A	229	Variable lymphocyte receptor diversity region; var	99.18
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	99.18
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	99.16
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	99.15
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.13
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	99.12
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	99.12
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.11
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	99.11
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	99.06
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	99.06
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	99.03
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.03
3e6j_A	229	Variable lymphocyte receptor diversity region; var	99.02
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.01
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	98.99
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	98.95
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	98.93
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	98.89
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	98.85
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	98.84
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	98.81
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	98.8
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	98.79
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	98.78
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	98.75
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	98.72
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	98.69
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	98.65
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	98.64
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	98.54
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	98.53
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	98.53
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	98.51
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	98.43
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	98.38
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	98.38
4fs7_A	394	Uncharacterized protein; leucine-rich repeats, pro	98.37
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	98.37
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	98.34
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	98.31
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	98.29
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	98.27
4fs7_A	394	Uncharacterized protein; leucine-rich repeats, pro	98.25
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	98.23
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	97.94
4gt6_A	394	Cell surface protein; leucine rich repeats, putati	97.71
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	97.69
4gt6_A	394	Cell surface protein; leucine rich repeats, putati	97.53
4h09_A	379	Hypothetical leucine rich repeat protein; two LRR_	96.97
4h09_A	379	Hypothetical leucine rich repeat protein; two LRR_	96.97
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	96.48
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	96.44
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	96.28
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	96.23
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	86.16
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	80.91

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=99.95  E-value=7.6e-26  Score=227.88  Aligned_cols=338  Identities=13%  Similarity=0.041  Sum_probs=176.0

Q ss_pred             ccccccCCcEEEecCccccccccccCCccccccCcccEEEeccCcCccccCchhHHhhhhccceEeeccccCcceEeccC
Q 036454           14 HSGAATQLRELHVFHLPKLTKLWNKDPQGKLIFRNLVVVRIFDCQSLKNIFPTSIARSLLRLETLSIKDCGSVEEIVAND   93 (410)
Q Consensus        14 ~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~   93 (410)
                      .++.+++|++|+++++. +..+   .|..+..+++|++|++++| .+....+..+ +++++|++|+++++. +..++.  
T Consensus        52 ~~~~l~~L~~L~Ls~n~-i~~~---~~~~~~~l~~L~~L~Ls~n-~l~~~~~~~~-~~l~~L~~L~L~~n~-i~~l~~--  122 (606)
T 3t6q_A           52 TFSRLINLTFLDLTRCQ-IYWI---HEDTFQSQHRLDTLVLTAN-PLIFMAETAL-SGPKALKHLFFIQTG-ISSIDF--  122 (606)
T ss_dssp             TSTTCTTCSEEECTTCC-CCEE---CTTTTTTCTTCCEEECTTC-CCSEECTTTT-SSCTTCCEEECTTSC-CSCGGG--
T ss_pred             HhccCccceEEECCCCc-ccee---ChhhccCccccCeeeCCCC-cccccChhhh-cccccccEeeccccC-cccCCc--
Confidence            35666777777777663 2221   1445566777777777766 4444444333 466777777776665 544422  


Q ss_pred             CCCCCCcccccCCCccEEeeccCCCccccccCcccCCCCCceEEEEccC----------Ccccccc--EEEeeccCcccc
Q 036454           94 GRGNDAATKFIFPSLTFLRLRDLPDLTTFYSGMHILECPELRKLEVNHV----------DVFANLE--ELTLSKCIFTTW  161 (410)
Q Consensus        94 ~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~~----------~~l~~L~--~L~i~~~~~~~~  161 (410)
                            ..+..+++|++|+++++ .+..+...... .+++|++|++.++          ..+++|+  .|++++|.+...
T Consensus       123 ------~~~~~l~~L~~L~L~~n-~l~~~~~~~~~-~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~l~L~l~~n~l~~~  194 (606)
T 3t6q_A          123 ------IPLHNQKTLESLYLGSN-HISSIKLPKGF-PTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDIAGI  194 (606)
T ss_dssp             ------SCCTTCTTCCEEECCSS-CCCCCCCCTTC-CCTTCCEEECCSSCCCEECHHHHHTTTTCCSEEEECTTCCCCEE
T ss_pred             ------chhccCCcccEEECCCC-cccccCccccc-CCcccCEEEcccCcccccChhhhhhhcccceeEEecCCCccCcc
Confidence                  14556677777777766 34433222111 3667777777666          2344555  566666655444


Q ss_pred             cccc--cc----------------------------------------------------cccEEEEEeCCCccchhhhh
Q 036454          162 RQAQ--FH----------------------------------------------------KLKILHFISDGSDFFQVGLL  187 (410)
Q Consensus       162 ~~~~--l~----------------------------------------------------~L~~L~l~~~~~~~~~~~~l  187 (410)
                      .+..  ..                                                    +|+.|++....+...+...+
T Consensus       195 ~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~l~~l~~~~~~~~~~~~i~~~~~~~l~~~~L~~L~l~~n~l~~~~~~~~  274 (606)
T 3t6q_A          195 EPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFNISSNTF  274 (606)
T ss_dssp             CTTTTTTCEEEEEECTTCSCHHHHHHHTTTCEEEEEECCCCTTSCCCCCCGGGGGGGGGSEEEEEECTTCCCSSCCTTTT
T ss_pred             ChhHhhhccccccccCCchhHHHHhhhccccchhheechhhccccccccChhHhchhhcCceeEEEeecCccCccCHHHh
Confidence            3322  11                                                    34455554444445555556


Q ss_pred             hhcccCceEEEeccccccccccchhhccccccCcccEEEeCCcccccccccCCCCccccccccceEEEEecccccccccc
Q 036454          188 QNIHNLEKLVLSTCEYKKIFSCEEVEEHAEGIAQIKSLKLKKLWLIEEHLWNPDSKLDSFLQNLEFLEVKKCALSLISLV  267 (410)
Q Consensus       188 ~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~l~~l~  267 (410)
                      .++++|+.|++++|.+..++.      .+..+++|++|+++++... ..    ....+..+++|++|++++|. ....++
T Consensus       275 ~~l~~L~~L~l~~n~l~~lp~------~l~~l~~L~~L~l~~n~l~-~~----~~~~~~~l~~L~~L~l~~n~-~~~~~~  342 (606)
T 3t6q_A          275 HCFSGLQELDLTATHLSELPS------GLVGLSTLKKLVLSANKFE-NL----CQISASNFPSLTHLSIKGNT-KRLELG  342 (606)
T ss_dssp             TTCTTCSEEECTTSCCSCCCS------SCCSCTTCCEEECTTCCCS-BG----GGGCGGGCTTCSEEECCSCS-SCCBCC
T ss_pred             ccccCCCEEeccCCccCCCCh------hhcccccCCEEECccCCcC-cC----chhhhhccCcCCEEECCCCC-cccccc
Confidence            677777777777777665544      3455677777777764322 11    12234556666666666664 322333


Q ss_pred             c-CccccCccCEEEEcccCCcccccc-hhhhhcCCCccEEEeccCcccchhccccCCCCccccccccceeecCcCcccce
Q 036454          268 P-SSASFRNLTVLKVCNCWQLISLVT-PQTAKTLVQLRELRVSECNRLEEIVANDGDADDEIVFSKLKWLFLESSESITS  345 (410)
Q Consensus       268 ~-~~~~~~~L~~L~l~~c~~l~~~~~-~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~  345 (410)
                      . .+..+++|++|+++++. +..... ......+++|++|++++|.-....+..++.      +++|+.|+++++. ++.
T Consensus       343 ~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~------l~~L~~L~l~~n~-l~~  414 (606)
T 3t6q_A          343 TGCLENLENLRELDLSHDD-IETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKE------CPQLELLDLAFTR-LKV  414 (606)
T ss_dssp             SSTTTTCTTCCEEECCSSC-CCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTT------CTTCSEEECTTCC-EEC
T ss_pred             hhhhhccCcCCEEECCCCc-cccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcC------CccCCeEECCCCc-CCC
Confidence            2 24556666666665542 333210 123355566666666655332223333344      5556666655542 332


Q ss_pred             ecCCCcccCCCCccEEEEecCCCCcccCCCCCCCCCcceeEec
Q 036454          346 FCSGNYAFSFPSLEDLIVENCPKLNTFSAGVLKTPRLQAVQNW  388 (410)
Q Consensus       346 ~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~L~~l~~~  388 (410)
                      ......+..+++|++|++++|.--...|..+..+++|++|+++
T Consensus       415 ~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~  457 (606)
T 3t6q_A          415 KDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQ  457 (606)
T ss_dssp             CTTCCTTTTCTTCCEEECTTCCCBTTCTTTTTTCTTCCEEECT
T ss_pred             cccchhhhCcccCCEEECCCCccCCcCHHHHhCCCCCCEEECC
Confidence            2222122345555555555553322333334445555555554

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=99.94  E-value=1.9e-25  Score=224.95  Aligned_cols=363  Identities=14%  Similarity=0.077  Sum_probs=176.0

Q ss_pred             cccccccCccc---cccccccCCcEEEecCccccccccccCCccccccCcccEEEeccCcCccccCchhHHhhhhccceE
Q 036454            2 IFDLQEVNSEE---THSGAATQLRELHVFHLPKLTKLWNKDPQGKLIFRNLVVVRIFDCQSLKNIFPTSIARSLLRLETL   78 (410)
Q Consensus         2 ~~~~~~~~~~~---~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L   78 (410)
                      .++++......   ..++.+++|++|+++++. +...   .|..+..+++|++|++++| .+..+.+..+ +++++|++|
T Consensus        61 ~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~-l~~~---~~~~~~~l~~L~~L~L~~n-~i~~l~~~~~-~~l~~L~~L  134 (606)
T 3t6q_A           61 FLDLTRCQIYWIHEDTFQSQHRLDTLVLTANP-LIFM---AETALSGPKALKHLFFIQT-GISSIDFIPL-HNQKTLESL  134 (606)
T ss_dssp             EEECTTCCCCEECTTTTTTCTTCCEEECTTCC-CSEE---CTTTTSSCTTCCEEECTTS-CCSCGGGSCC-TTCTTCCEE
T ss_pred             EEECCCCccceeChhhccCccccCeeeCCCCc-cccc---ChhhhcccccccEeecccc-CcccCCcchh-ccCCcccEE
Confidence            45566654432   347788999999998874 3322   1556678888888888888 4554433333 578888888


Q ss_pred             eeccccCcceEeccCCC----------------CCCCcccccCCCcc--EEeeccCCCccccccCcccCCCC--------
Q 036454           79 SIKDCGSVEEIVANDGR----------------GNDAATKFIFPSLT--FLRLRDLPDLTTFYSGMHILECP--------  132 (410)
Q Consensus        79 ~l~~~~~l~~~~~~~~~----------------~~~~~~~~~l~~L~--~L~l~~~~~l~~~~~~~~~~~~~--------  132 (410)
                      +++++. +..++...+.                +.....+..+++|+  .|+++++ .+...+...+  ...        
T Consensus       135 ~L~~n~-l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~l~L~l~~n-~l~~~~~~~~--~~~~L~~L~l~  210 (606)
T 3t6q_A          135 YLGSNH-ISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGN-DIAGIEPGAF--DSAVFQSLNFG  210 (606)
T ss_dssp             ECCSSC-CCCCCCCTTCCCTTCCEEECCSSCCCEECHHHHHTTTTCCSEEEECTTC-CCCEECTTTT--TTCEEEEEECT
T ss_pred             ECCCCc-ccccCcccccCCcccCEEEcccCcccccChhhhhhhcccceeEEecCCC-ccCccChhHh--hhccccccccC
Confidence            888775 5544211100                00001223333444  3444433 2222211111  111        


Q ss_pred             --------------------------------------------CceEEEEccC----------CccccccEEEeeccCc
Q 036454          133 --------------------------------------------ELRKLEVNHV----------DVFANLEELTLSKCIF  158 (410)
Q Consensus       133 --------------------------------------------~L~~L~l~~~----------~~l~~L~~L~i~~~~~  158 (410)
                                                                  +|++|++.++          ..+++|++|++++|.+
T Consensus       211 ~~~~~~~~~~~l~~~~l~~l~~~~~~~~~~~~i~~~~~~~l~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l  290 (606)
T 3t6q_A          211 GTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFNISSNTFHCFSGLQELDLTATHL  290 (606)
T ss_dssp             TCSCHHHHHHHTTTCEEEEEECCCCTTSCCCCCCGGGGGGGGGSEEEEEECTTCCCSSCCTTTTTTCTTCSEEECTTSCC
T ss_pred             CchhHHHHhhhccccchhheechhhccccccccChhHhchhhcCceeEEEeecCccCccCHHHhccccCCCEEeccCCcc
Confidence                                                        2333333333          1234445555555444


Q ss_pred             ccccccc--cccccEEEEEeCCCccchhhhhhhcccCceEEEeccccccccccchhhccccccCcccEEEeCCccccccc
Q 036454          159 TTWRQAQ--FHKLKILHFISDGSDFFQVGLLQNIHNLEKLVLSTCEYKKIFSCEEVEEHAEGIAQIKSLKLKKLWLIEEH  236 (410)
Q Consensus       159 ~~~~~~~--l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~  236 (410)
                      ..++...  +++|+.|++....+...+...+.++++|+.|++++|.+.....    ...+..+++|++|+++++... ..
T Consensus       291 ~~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~----~~~~~~l~~L~~L~l~~n~l~-~~  365 (606)
T 3t6q_A          291 SELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELG----TGCLENLENLRELDLSHDDIE-TS  365 (606)
T ss_dssp             SCCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECCSCSSCCBCC----SSTTTTCTTCCEEECCSSCCC-EE
T ss_pred             CCCChhhcccccCCEEECccCCcCcCchhhhhccCcCCEEECCCCCcccccc----hhhhhccCcCCEEECCCCccc-cc
Confidence            4333222  4455555554333333333334445555555555544321111    011334555555555553221 00


Q ss_pred             ccCCCCccccccccceEEEEecccccccccccCccccCccCEEEEcccCCcccccchhhhhcCCCccEEEeccCcccchh
Q 036454          237 LWNPDSKLDSFLQNLEFLEVKKCALSLISLVPSSASFRNLTVLKVCNCWQLISLVTPQTAKTLVQLRELRVSECNRLEEI  316 (410)
Q Consensus       237 ~~~~~~~~~~~~~~L~~L~l~~~~~~l~~l~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~  316 (410)
                      .  .....+..+++|++|++++|. .....+..+..+++|++|+++++. +...........+++|++|++++|.-....
T Consensus       366 ~--~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~  441 (606)
T 3t6q_A          366 D--CCNLQLRNLSHLQSLNLSYNE-PLSLKTEAFKECPQLELLDLAFTR-LKVKDAQSPFQNLHLLKVLNLSHSLLDISS  441 (606)
T ss_dssp             E--ESTTTTTTCTTCCEEECCSCS-CEEECTTTTTTCTTCSEEECTTCC-EECCTTCCTTTTCTTCCEEECTTCCCBTTC
T ss_pred             c--CcchhcccCCCCCEEECCCCc-CCcCCHHHhcCCccCCeEECCCCc-CCCcccchhhhCcccCCEEECCCCccCCcC
Confidence            0  001224455666666666663 222223344556666666665552 333322223455666666666665433333


Q ss_pred             ccccCCCCccccccccceeecCcCcccce--ecCCCcccCCCCccEEEEecCCCCcccCCCCCCCCCcceeEeccc
Q 036454          317 VANDGDADDEIVFSKLKWLFLESSESITS--FCSGNYAFSFPSLEDLIVENCPKLNTFSAGVLKTPRLQAVQNWEL  390 (410)
Q Consensus       317 ~~~~~~~~~~~~~~~L~~L~l~~c~~l~~--~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~L~~l~~~~~  390 (410)
                      +..++.      +++|++|++++++ ++.  ++....+..+++|++|++++|.--...|..+..+++|++|+++++
T Consensus       442 ~~~~~~------l~~L~~L~L~~n~-l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N  510 (606)
T 3t6q_A          442 EQLFDG------LPALQHLNLQGNH-FPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHN  510 (606)
T ss_dssp             TTTTTT------CTTCCEEECTTCB-CGGGEECSSCGGGGCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred             HHHHhC------CCCCCEEECCCCC-CCccccccchhhccCCCccEEECCCCccCccChhhhccccCCCEEECCCC
Confidence            444444      6677777777654 222  122123345677777777666433333555556677777777644

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=99.94  E-value=8.5e-25  Score=213.14  Aligned_cols=314  Identities=17%  Similarity=0.175  Sum_probs=185.6

Q ss_pred             cccccCCcEEEecCccccccccccCCccccccCcccEEEeccCcCccccCchhHHhhhhccceEeeccccCcceEeccCC
Q 036454           15 SGAATQLRELHVFHLPKLTKLWNKDPQGKLIFRNLVVVRIFDCQSLKNIFPTSIARSLLRLETLSIKDCGSVEEIVANDG   94 (410)
Q Consensus        15 ~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~   94 (410)
                      +..+++|++|+++++. ++.+    +. +..+++|++|++++| .+..+++   ++++++|++|+++++. +..++    
T Consensus        64 ~~~l~~L~~L~Ls~n~-l~~~----~~-~~~l~~L~~L~l~~n-~l~~~~~---~~~l~~L~~L~L~~n~-l~~~~----  128 (466)
T 1o6v_A           64 VEYLNNLTQINFSNNQ-LTDI----TP-LKNLTKLVDILMNNN-QIADITP---LANLTNLTGLTLFNNQ-ITDID----  128 (466)
T ss_dssp             GGGCTTCCEEECCSSC-CCCC----GG-GTTCTTCCEEECCSS-CCCCCGG---GTTCTTCCEEECCSSC-CCCCG----
T ss_pred             hhhhcCCCEEECCCCc-cCCc----hh-hhccccCCEEECCCC-ccccChh---hcCCCCCCEEECCCCC-CCCCh----
Confidence            3445555555555542 2221    11 345555555555555 3333322   1455555555555543 33332    


Q ss_pred             CCCCCcccccCCCccEEeeccCCCccccccCcccCCCCCceEEEEccC-------CccccccEEEeeccCcccccccc-c
Q 036454           95 RGNDAATKFIFPSLTFLRLRDLPDLTTFYSGMHILECPELRKLEVNHV-------DVFANLEELTLSKCIFTTWRQAQ-F  166 (410)
Q Consensus        95 ~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~~-------~~l~~L~~L~i~~~~~~~~~~~~-l  166 (410)
                            .+..+++|++|+++++ .+..++.  + ..+++|++|++.+.       ..+++|+.|++++|......... +
T Consensus       129 ------~~~~l~~L~~L~l~~n-~l~~~~~--~-~~l~~L~~L~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~l~~l  198 (466)
T 1o6v_A          129 ------PLKNLTNLNRLELSSN-TISDISA--L-SGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSDISVLAKL  198 (466)
T ss_dssp             ------GGTTCTTCSEEEEEEE-EECCCGG--G-TTCTTCSEEEEEESCCCCGGGTTCTTCCEEECCSSCCCCCGGGGGC
T ss_pred             ------HHcCCCCCCEEECCCC-ccCCChh--h-ccCCcccEeecCCcccCchhhccCCCCCEEECcCCcCCCChhhccC
Confidence                  2445566666666655 3333322  1 24566666666443       34566777777777665554333 6


Q ss_pred             ccccEEEEEeCCCccchhhhhhhcccCceEEEeccccccccccchhhccccccCcccEEEeCCcccccccccCCCCcccc
Q 036454          167 HKLKILHFISDGSDFFQVGLLQNIHNLEKLVLSTCEYKKIFSCEEVEEHAEGIAQIKSLKLKKLWLIEEHLWNPDSKLDS  246 (410)
Q Consensus       167 ~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~  246 (410)
                      ++|+.|++........+.  ++.+++|+.|++++|.+..+..       +..+++|++|+++++...  .     ...+.
T Consensus       199 ~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~-------l~~l~~L~~L~l~~n~l~--~-----~~~~~  262 (466)
T 1o6v_A          199 TNLESLIATNNQISDITP--LGILTNLDELSLNGNQLKDIGT-------LASLTNLTDLDLANNQIS--N-----LAPLS  262 (466)
T ss_dssp             TTCSEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG-------GGGCTTCSEEECCSSCCC--C-----CGGGT
T ss_pred             CCCCEEEecCCccccccc--ccccCCCCEEECCCCCcccchh-------hhcCCCCCEEECCCCccc--c-----chhhh
Confidence            777777775444444432  4567777777777776655432       456677888888774322  1     12256


Q ss_pred             ccccceEEEEecccccccccccCccccCccCEEEEcccCCcccccchhhhhcCCCccEEEeccCcccchhccccCCCCcc
Q 036454          247 FLQNLEFLEVKKCALSLISLVPSSASFRNLTVLKVCNCWQLISLVTPQTAKTLVQLRELRVSECNRLEEIVANDGDADDE  326 (410)
Q Consensus       247 ~~~~L~~L~l~~~~~~l~~l~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~  326 (410)
                      .+++|++|++++|  .+..+++ +..+++|++|++++| .+..++.   ...+++|++|++++|. +..++. +..    
T Consensus       263 ~l~~L~~L~l~~n--~l~~~~~-~~~l~~L~~L~L~~n-~l~~~~~---~~~l~~L~~L~L~~n~-l~~~~~-~~~----  329 (466)
T 1o6v_A          263 GLTKLTELKLGAN--QISNISP-LAGLTALTNLELNEN-QLEDISP---ISNLKNLTYLTLYFNN-ISDISP-VSS----  329 (466)
T ss_dssp             TCTTCSEEECCSS--CCCCCGG-GTTCTTCSEEECCSS-CCSCCGG---GGGCTTCSEEECCSSC-CSCCGG-GGG----
T ss_pred             cCCCCCEEECCCC--ccCcccc-ccCCCccCeEEcCCC-cccCchh---hcCCCCCCEEECcCCc-CCCchh-hcc----
Confidence            7788888888887  4555544 667788888888776 3555532   5678888888888863 333322 344    


Q ss_pred             ccccccceeecCcCcccceecCCCcccCCCCccEEEEecCCCCcccCCCCCCCCCcceeEeccc
Q 036454          327 IVFSKLKWLFLESSESITSFCSGNYAFSFPSLEDLIVENCPKLNTFSAGVLKTPRLQAVQNWEL  390 (410)
Q Consensus       327 ~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~L~~l~~~~~  390 (410)
                        +++|+.|++++| .++.+.   ....+++|++|++.+|.--...|  ...+++|++++++++
T Consensus       330 --l~~L~~L~l~~n-~l~~~~---~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n  385 (466)
T 1o6v_A          330 --LTKLQRLFFYNN-KVSDVS---SLANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQ  385 (466)
T ss_dssp             --CTTCCEEECCSS-CCCCCG---GGTTCTTCCEEECCSSCCCBCGG--GTTCTTCCEEECCCE
T ss_pred             --CccCCEeECCCC-ccCCch---hhccCCCCCEEeCCCCccCccch--hhcCCCCCEEeccCC
Confidence              788888888886 455553   23468888888888875443334  556888888888743

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=99.93  E-value=8e-25  Score=220.39  Aligned_cols=204  Identities=15%  Similarity=0.075  Sum_probs=121.2

Q ss_pred             cccccEEEEEeCCCccch--hhhhhhcccCceEEEeccccccccccchhhccccccCcccEEEeCCcccccccccCCCCc
Q 036454          166 FHKLKILHFISDGSDFFQ--VGLLQNIHNLEKLVLSTCEYKKIFSCEEVEEHAEGIAQIKSLKLKKLWLIEEHLWNPDSK  243 (410)
Q Consensus       166 l~~L~~L~l~~~~~~~~~--~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~  243 (410)
                      +++|+.|+++...+....  ...+..+++|+.|++++|.+..+..      .+..+++|+.|+++++... ...   ...
T Consensus       349 l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~------~~~~l~~L~~L~l~~n~l~-~~~---~~~  418 (606)
T 3vq2_A          349 LPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAIIMSA------NFMGLEELQHLDFQHSTLK-RVT---EFS  418 (606)
T ss_dssp             CTTCCEEECCSSCEEEEEECCHHHHCCSCCCEEECCSCSEEEECC------CCTTCTTCCEEECTTSEEE-STT---TTT
T ss_pred             CCCCCEEECcCCccCCCcchhhhhccCCcccEeECCCCccccchh------hccCCCCCCeeECCCCccC-Ccc---Chh
Confidence            444444444333333221  2334555556666665555444432      3455667777777664322 111   113


Q ss_pred             cccccccceEEEEecccccccccccCccccCccCEEEEcccCCcccccchhhhhcCCCccEEEeccCcccchhccccCCC
Q 036454          244 LDSFLQNLEFLEVKKCALSLISLVPSSASFRNLTVLKVCNCWQLISLVTPQTAKTLVQLRELRVSECNRLEEIVANDGDA  323 (410)
Q Consensus       244 ~~~~~~~L~~L~l~~~~~~l~~l~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~  323 (410)
                      .+..+++|++|++++|. .....+..+..+++|++|++++|. +...........+++|++|++++|.-....+..++. 
T Consensus       419 ~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~-  495 (606)
T 3vq2_A          419 AFLSLEKLLYLDISYTN-TKIDFDGIFLGLTSLNTLKMAGNS-FKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDT-  495 (606)
T ss_dssp             TTTTCTTCCEEECTTSC-CEECCTTTTTTCTTCCEEECTTCE-EGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTT-
T ss_pred             hhhccccCCEEECcCCC-CCccchhhhcCCCCCCEEECCCCc-CCCcchHHhhccCCCCCEEECCCCcCCccChhhhcc-
Confidence            45667778888888774 333345556677788888887763 433111134467788888888887444444455566 


Q ss_pred             CccccccccceeecCcCcccceecCCCcccCCCCccEEEEecCCCCcccCCCCCCCC-CcceeEeccc
Q 036454          324 DDEIVFSKLKWLFLESSESITSFCSGNYAFSFPSLEDLIVENCPKLNTFSAGVLKTP-RLQAVQNWEL  390 (410)
Q Consensus       324 ~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~-~L~~l~~~~~  390 (410)
                           +++|++|+++++ .++..... .+..+++|++|++++| .++.+|..+..++ +|+++++++|
T Consensus       496 -----l~~L~~L~Ls~N-~l~~~~~~-~~~~l~~L~~L~l~~N-~l~~~p~~~~~l~~~L~~l~l~~N  555 (606)
T 3vq2_A          496 -----LHRLQLLNMSHN-NLLFLDSS-HYNQLYSLSTLDCSFN-RIETSKGILQHFPKSLAFFNLTNN  555 (606)
T ss_dssp             -----CTTCCEEECCSS-CCSCEEGG-GTTTCTTCCEEECTTS-CCCCEESCGGGSCTTCCEEECCSC
T ss_pred             -----cccCCEEECCCC-cCCCcCHH-HccCCCcCCEEECCCC-cCcccCHhHhhhcccCcEEEccCC
Confidence                 888888888886 45555332 2346888888888887 4677887766666 5888888743

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=99.93  E-value=9.8e-25  Score=219.76  Aligned_cols=110  Identities=11%  Similarity=0.071  Sum_probs=64.9

Q ss_pred             cccccCCcEEEecCccccccccccCCccccccCcccEEEeccCcCccccCchhHHhhhhccceEeeccccCcceEeccCC
Q 036454           15 SGAATQLRELHVFHLPKLTKLWNKDPQGKLIFRNLVVVRIFDCQSLKNIFPTSIARSLLRLETLSIKDCGSVEEIVANDG   94 (410)
Q Consensus        15 ~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~   94 (410)
                      +..+++|++|+++++ .++.+.   |..+..+++|++|++++| .+..++|..+ +++++|++|+++++. +..++.   
T Consensus        52 ~~~l~~L~~L~Ls~n-~l~~i~---~~~~~~l~~L~~L~Ls~n-~l~~~~p~~~-~~l~~L~~L~L~~n~-l~~~~~---  121 (606)
T 3vq2_A           52 FSNFSELQWLDLSRC-EIETIE---DKAWHGLHHLSNLILTGN-PIQSFSPGSF-SGLTSLENLVAVETK-LASLES---  121 (606)
T ss_dssp             TTTCTTCCEEECTTC-CCCEEC---TTTTTTCTTCCEEECTTC-CCCCCCTTSS-TTCTTCCEEECTTSC-CCCSSS---
T ss_pred             ccCCccCcEEeCCCC-cccccC---HHHhhchhhcCEeECCCC-cccccChhhc-CCcccCCEEEccCCc-cccccc---
Confidence            555666666666665 233221   344556667777777666 3444444333 466677777776665 444432   


Q ss_pred             CCCCCcccccCCCccEEeeccCCCccc--cccCcccCCCCCceEEEEccC
Q 036454           95 RGNDAATKFIFPSLTFLRLRDLPDLTT--FYSGMHILECPELRKLEVNHV  142 (410)
Q Consensus        95 ~~~~~~~~~~l~~L~~L~l~~~~~l~~--~~~~~~~~~~~~L~~L~l~~~  142 (410)
                           ..+..+++|++|+++++ .+..  ++...  ..+++|++|+++++
T Consensus       122 -----~~~~~l~~L~~L~L~~n-~l~~~~lp~~~--~~l~~L~~L~Ls~n  163 (606)
T 3vq2_A          122 -----FPIGQLITLKKLNVAHN-FIHSCKLPAYF--SNLTNLVHVDLSYN  163 (606)
T ss_dssp             -----SCCTTCTTCCEEECCSS-CCCCCCCCGGG--GTCTTCCEEECCSS
T ss_pred             -----cccCCCCCCCEEeCCCC-cccceechHhH--hhcCCCCEEEccCC
Confidence                 25667778888888877 3432  23222  36788888888776

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=99.93  E-value=3.8e-25  Score=228.39  Aligned_cols=264  Identities=16%  Similarity=0.036  Sum_probs=155.8

Q ss_pred             CccEEeeccCCCccccccCcccCCCCCceEEEEccC----------CccccccEEEeeccCcccccccc---cccccEEE
Q 036454          107 SLTFLRLRDLPDLTTFYSGMHILECPELRKLEVNHV----------DVFANLEELTLSKCIFTTWRQAQ---FHKLKILH  173 (410)
Q Consensus       107 ~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~~----------~~l~~L~~L~i~~~~~~~~~~~~---l~~L~~L~  173 (410)
                      +|+.|+++++......+.......+++|++|++.+|          ..+++|+.|++++|.+....+..   +++|+.|+
T Consensus       369 ~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~  448 (768)
T 3rgz_A          369 SLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLK  448 (768)
T ss_dssp             TCSEEECCSSEEEEECCTTTTCSTTCCCCEEECCSSEEEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEE
T ss_pred             CCcEEEccCCCcCCCcChhhhhcccCCccEEECCCCccccccCHHHhcCCCCCEEECcCCcccCcccHHHhcCCCCCEEE
Confidence            555555555422212222221112556666666666          33456667777766665444332   66677777


Q ss_pred             EEeCCCccchhhhhhhcccCceEEEeccccccccccchhhccccccCcccEEEeCCcccccccccCCCCccccccccceE
Q 036454          174 FISDGSDFFQVGLLQNIHNLEKLVLSTCEYKKIFSCEEVEEHAEGIAQIKSLKLKKLWLIEEHLWNPDSKLDSFLQNLEF  253 (410)
Q Consensus       174 l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~L~~  253 (410)
                      +............+..+++|+.|++++|.+....+     ..+..+++|+.|+++++...     ...+..+..+++|++
T Consensus       449 L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p-----~~l~~l~~L~~L~L~~N~l~-----~~~p~~~~~l~~L~~  518 (768)
T 3rgz_A          449 LWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIP-----SGLSNCTNLNWISLSNNRLT-----GEIPKWIGRLENLAI  518 (768)
T ss_dssp             CCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCC-----GGGGGCTTCCEEECCSSCCC-----SCCCGGGGGCTTCCE
T ss_pred             CCCCcccCcCCHHHcCCCCceEEEecCCcccCcCC-----HHHhcCCCCCEEEccCCccC-----CcCChHHhcCCCCCE
Confidence            74444443333445666777777777776554332     13455677777777774322     222445667777777


Q ss_pred             EEEecccccccccccCccccCccCEEEEcccCCcccccch----------------------------------------
Q 036454          254 LEVKKCALSLISLVPSSASFRNLTVLKVCNCWQLISLVTP----------------------------------------  293 (410)
Q Consensus       254 L~l~~~~~~l~~l~~~~~~~~~L~~L~l~~c~~l~~~~~~----------------------------------------  293 (410)
                      |++++|. ....+|..+..+++|++|++++|.-...+|..                                        
T Consensus       519 L~L~~N~-l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  597 (768)
T 3rgz_A          519 LKLSNNS-FSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQ  597 (768)
T ss_dssp             EECCSSC-CEEECCGGGGGCTTCCEEECCSSEEESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECT
T ss_pred             EECCCCc-ccCcCCHHHcCCCCCCEEECCCCccCCcCChHHhcccchhhhhccccccccccccccccccccccccccccc
Confidence            7777775 43456666677777777777765311122110                                        


Q ss_pred             ----------------------------hhhhcCCCccEEEeccCcccchhccccCCCCccccccccceeecCcCcccc-
Q 036454          294 ----------------------------QTAKTLVQLRELRVSECNRLEEIVANDGDADDEIVFSKLKWLFLESSESIT-  344 (410)
Q Consensus       294 ----------------------------~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~-  344 (410)
                                                  .....+++|+.|+++++.-...+|..++.      +++|+.|+++++. ++ 
T Consensus       598 ~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~------l~~L~~L~Ls~N~-l~g  670 (768)
T 3rgz_A          598 GIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGS------MPYLFILNLGHND-ISG  670 (768)
T ss_dssp             TCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEECCSSCCBSCCCGGGGG------CTTCCEEECCSSC-CCS
T ss_pred             cccchhhhccccccccccccceecccCchhhhccccccEEECcCCcccccCCHHHhc------cccCCEEeCcCCc-cCC
Confidence                                        01123456777777776555566776666      7888888888754 44 


Q ss_pred             eecCCCcccCCCCccEEEEecCCCCcccCCCCCCCCCcceeEeccc
Q 036454          345 SFCSGNYAFSFPSLEDLIVENCPKLNTFSAGVLKTPRLQAVQNWEL  390 (410)
Q Consensus       345 ~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~L~~l~~~~~  390 (410)
                      .++..  +..+++|+.|+++++.--..+|..+..+++|++++++.|
T Consensus       671 ~ip~~--l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ls~N  714 (768)
T 3rgz_A          671 SIPDE--VGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNN  714 (768)
T ss_dssp             CCCGG--GGGCTTCCEEECCSSCCEECCCGGGGGCCCCSEEECCSS
T ss_pred             CCChH--HhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECcCC
Confidence            34432  345788888888887555577877777888888888754

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=99.93  E-value=1.3e-24  Score=216.28  Aligned_cols=124  Identities=16%  Similarity=0.149  Sum_probs=81.3

Q ss_pred             ccccccceEEEEecccccccccccCccccCccCEEEEcccCCcccccchhhhhcCCCccEEEeccCcccchhccccCCCC
Q 036454          245 DSFLQNLEFLEVKKCALSLISLVPSSASFRNLTVLKVCNCWQLISLVTPQTAKTLVQLRELRVSECNRLEEIVANDGDAD  324 (410)
Q Consensus       245 ~~~~~~L~~L~l~~~~~~l~~l~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~  324 (410)
                      +..+++|++|++++|  .++.+|..+..+++|++|+++++. +..++.    ...++|++|++++| .++.++   ..  
T Consensus       383 ~~~l~~L~~L~Ls~N--~l~~lp~~~~~~~~L~~L~Ls~N~-l~~l~~----~~~~~L~~L~Ls~N-~l~~~~---~~--  449 (549)
T 2z81_A          383 LLTLKNLTSLDISRN--TFHPMPDSCQWPEKMRFLNLSSTG-IRVVKT----CIPQTLEVLDVSNN-NLDSFS---LF--  449 (549)
T ss_dssp             GGGCTTCCEEECTTC--CCCCCCSCCCCCTTCCEEECTTSC-CSCCCT----TSCTTCSEEECCSS-CCSCCC---CC--
T ss_pred             hhcCCCCCEEECCCC--CCccCChhhcccccccEEECCCCC-cccccc----hhcCCceEEECCCC-Chhhhc---cc--
Confidence            455667777777776  455566656666677777776653 544432    22356777777765 333332   23  


Q ss_pred             ccccccccceeecCcCcccceecCCCcccCCCCccEEEEecCCCCcccCC-CCCCCCCcceeEeccc
Q 036454          325 DEIVFSKLKWLFLESSESITSFCSGNYAFSFPSLEDLIVENCPKLNTFSA-GVLKTPRLQAVQNWEL  390 (410)
Q Consensus       325 ~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~-~~~~~~~L~~l~~~~~  390 (410)
                          +++|++|+++++ .++.++..   ..+++|++|++++| .++.++. .+..+++|+++++++|
T Consensus       450 ----l~~L~~L~Ls~N-~l~~ip~~---~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~l~~N  507 (549)
T 2z81_A          450 ----LPRLQELYISRN-KLKTLPDA---SLFPVLLVMKISRN-QLKSVPDGIFDRLTSLQKIWLHTN  507 (549)
T ss_dssp             ----CTTCCEEECCSS-CCSSCCCG---GGCTTCCEEECCSS-CCCCCCTTGGGGCTTCCEEECCSS
T ss_pred             ----CChhcEEECCCC-ccCcCCCc---ccCccCCEEecCCC-ccCCcCHHHHhcCcccCEEEecCC
Confidence                888999999986 56766642   35889999999887 5555544 4667899999999744

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=99.93  E-value=5.1e-25  Score=227.42  Aligned_cols=308  Identities=16%  Similarity=0.047  Sum_probs=167.2

Q ss_pred             ccCcccEEEeccCcCccccCchhHHhhhhccceEeeccccCcc-eEeccCCCCCCCcccccCCCccEEeeccCCCccccc
Q 036454           45 IFRNLVVVRIFDCQSLKNIFPTSIARSLLRLETLSIKDCGSVE-EIVANDGRGNDAATKFIFPSLTFLRLRDLPDLTTFY  123 (410)
Q Consensus        45 ~l~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~-~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~  123 (410)
                      .+++|++|++++|......+.   ++++++|++|+++++. +. .++.         .+..+++|+.|+++++......+
T Consensus       198 ~l~~L~~L~Ls~n~l~~~~~~---l~~l~~L~~L~Ls~n~-l~~~~~~---------~l~~l~~L~~L~Ls~n~l~~~~~  264 (768)
T 3rgz_A          198 RCVNLEFLDVSSNNFSTGIPF---LGDCSALQHLDISGNK-LSGDFSR---------AISTCTELKLLNISSNQFVGPIP  264 (768)
T ss_dssp             TCTTCCEEECCSSCCCSCCCB---CTTCCSCCEEECCSSC-CCSCHHH---------HTTTCSSCCEEECCSSCCEESCC
T ss_pred             cCCcCCEEECcCCcCCCCCcc---cccCCCCCEEECcCCc-CCCcccH---------HHhcCCCCCEEECCCCcccCccC
Confidence            455555555555532222222   1455555555555554 32 2222         44556666666666663222222


Q ss_pred             cCcccCCCCCceEEEEccC-----------CccccccEEEeeccCcccccccc---cccccEEEEEeCCCc-cchhhhhh
Q 036454          124 SGMHILECPELRKLEVNHV-----------DVFANLEELTLSKCIFTTWRQAQ---FHKLKILHFISDGSD-FFQVGLLQ  188 (410)
Q Consensus       124 ~~~~~~~~~~L~~L~l~~~-----------~~l~~L~~L~i~~~~~~~~~~~~---l~~L~~L~l~~~~~~-~~~~~~l~  188 (410)
                      .    ..+++|++|++.+|           ..+++|++|++++|.+....+..   +++|+.|++...... .++...+.
T Consensus       265 ~----~~l~~L~~L~L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~ip~~~l~  340 (768)
T 3rgz_A          265 P----LPLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLL  340 (768)
T ss_dssp             C----CCCTTCCEEECCSSEEEESCCCCSCTTCTTCSEEECCSSEEEECCCGGGGGCTTCCEEECCSSEEEEECCHHHHT
T ss_pred             c----cccCCCCEEECcCCccCCccCHHHHhhcCcCCEEECcCCcCCCccchHHhcCCCccEEECCCCcccCcCCHHHHh
Confidence            1    14566677766666           11266777777777665444332   666777777444333 55555566


Q ss_pred             hcccCceEEEeccccccccccchhhccccc---------------------------cCcccEEEeCCcccccccccCCC
Q 036454          189 NIHNLEKLVLSTCEYKKIFSCEEVEEHAEG---------------------------IAQIKSLKLKKLWLIEEHLWNPD  241 (410)
Q Consensus       189 ~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~---------------------------l~~L~~L~l~~c~~l~~~~~~~~  241 (410)
                      ++++|+.|++++|.+....+.     .+..                           +++|++|+++++... ..+    
T Consensus       341 ~l~~L~~L~Ls~n~l~~~~p~-----~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~n~l~-~~~----  410 (768)
T 3rgz_A          341 KMRGLKVLDLSFNEFSGELPE-----SLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFT-GKI----  410 (768)
T ss_dssp             TCTTCCEEECCSSEEEECCCT-----THHHHTTTCSEEECCSSEEEEECCTTTTCSTTCCCCEEECCSSEEE-EEC----
T ss_pred             cCCCCCEEeCcCCccCccccH-----HHHhhhcCCcEEEccCCCcCCCcChhhhhcccCCccEEECCCCccc-ccc----
Confidence            677777777776655422220     1122                           334444444443222 111    


Q ss_pred             CccccccccceEEEEecccccccccccCccccCccCEEEEcccCCcccccchhhhhcCCCccEEEeccCcccchhccccC
Q 036454          242 SKLDSFLQNLEFLEVKKCALSLISLVPSSASFRNLTVLKVCNCWQLISLVTPQTAKTLVQLRELRVSECNRLEEIVANDG  321 (410)
Q Consensus       242 ~~~~~~~~~L~~L~l~~~~~~l~~l~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~  321 (410)
                      +..+..+++|++|++++|. ....++..++.+++|++|++++|.-...++  .....+++|++|++++|.-...++..++
T Consensus       411 p~~l~~l~~L~~L~Ls~N~-l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p--~~~~~l~~L~~L~L~~N~l~~~~p~~l~  487 (768)
T 3rgz_A          411 PPTLSNCSELVSLHLSFNY-LSGTIPSSLGSLSKLRDLKLWLNMLEGEIP--QELMYVKTLETLILDFNDLTGEIPSGLS  487 (768)
T ss_dssp             CGGGGGCTTCCEEECCSSE-EESCCCGGGGGCTTCCEEECCSSCCCSCCC--GGGGGCTTCCEEECCSSCCCSCCCGGGG
T ss_pred             CHHHhcCCCCCEEECcCCc-ccCcccHHHhcCCCCCEEECCCCcccCcCC--HHHcCCCCceEEEecCCcccCcCCHHHh
Confidence            2345556666666666663 223445555666666666666653222232  2345667777777776654445555555


Q ss_pred             CCCccccccccceeecCcCcccceecCCCcccCCCCccEEEEecCCCCcccCCCCCCCCCcceeEeccc
Q 036454          322 DADDEIVFSKLKWLFLESSESITSFCSGNYAFSFPSLEDLIVENCPKLNTFSAGVLKTPRLQAVQNWEL  390 (410)
Q Consensus       322 ~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~L~~l~~~~~  390 (410)
                      .      +++|+.|+++++.-...++..  +..+++|++|++++|.-...+|..+..+++|+++++++|
T Consensus       488 ~------l~~L~~L~L~~N~l~~~~p~~--~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N  548 (768)
T 3rgz_A          488 N------CTNLNWISLSNNRLTGEIPKW--IGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTN  548 (768)
T ss_dssp             G------CTTCCEEECCSSCCCSCCCGG--GGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSS
T ss_pred             c------CCCCCEEEccCCccCCcCChH--HhcCCCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCC
Confidence            5      777777777776432233322  235777777777777555567776667777777777643

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=99.93  E-value=1.8e-24  Score=202.67  Aligned_cols=304  Identities=15%  Similarity=0.178  Sum_probs=211.2

Q ss_pred             cccccccCCcEEEecCccccccccccCCccccccCcccEEEeccCcCccccCchhHHhhhhccceEeeccccCcceEecc
Q 036454           13 THSGAATQLRELHVFHLPKLTKLWNKDPQGKLIFRNLVVVRIFDCQSLKNIFPTSIARSLLRLETLSIKDCGSVEEIVAN   92 (410)
Q Consensus        13 ~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~   92 (410)
                      .....+++|++|++.++. +..+     ..+..+++|++|++++| .+..+++   +.++++|++|+++++. +..++  
T Consensus        38 ~~~~~l~~L~~L~l~~~~-i~~~-----~~~~~~~~L~~L~l~~n-~i~~~~~---~~~l~~L~~L~L~~n~-i~~~~--  104 (347)
T 4fmz_A           38 VTQEELESITKLVVAGEK-VASI-----QGIEYLTNLEYLNLNGN-QITDISP---LSNLVKLTNLYIGTNK-ITDIS--  104 (347)
T ss_dssp             ECHHHHTTCSEEECCSSC-CCCC-----TTGGGCTTCCEEECCSS-CCCCCGG---GTTCTTCCEEECCSSC-CCCCG--
T ss_pred             ccchhcccccEEEEeCCc-cccc-----hhhhhcCCccEEEccCC-ccccchh---hhcCCcCCEEEccCCc-ccCch--
Confidence            346679999999999974 3332     34678999999999998 6666655   3789999999999985 66653  


Q ss_pred             CCCCCCCcccccCCCccEEeeccCCCccccccCcccCCCCCceEEEEccCCccccccEEEeeccCcccccc-cc-ccccc
Q 036454           93 DGRGNDAATKFIFPSLTFLRLRDLPDLTTFYSGMHILECPELRKLEVNHVDVFANLEELTLSKCIFTTWRQ-AQ-FHKLK  170 (410)
Q Consensus        93 ~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~l~~L~~L~i~~~~~~~~~~-~~-l~~L~  170 (410)
                              .+..+++|++|+++++ .+..++.  . ..+++|++|++.+|              ......+ .. +++|+
T Consensus       105 --------~~~~l~~L~~L~l~~n-~i~~~~~--~-~~l~~L~~L~l~~n--------------~~~~~~~~~~~l~~L~  158 (347)
T 4fmz_A          105 --------ALQNLTNLRELYLNED-NISDISP--L-ANLTKMYSLNLGAN--------------HNLSDLSPLSNMTGLN  158 (347)
T ss_dssp             --------GGTTCTTCSEEECTTS-CCCCCGG--G-TTCTTCCEEECTTC--------------TTCCCCGGGTTCTTCC
T ss_pred             --------HHcCCCcCCEEECcCC-cccCchh--h-ccCCceeEEECCCC--------------CCcccccchhhCCCCc
Confidence                    5677899999999987 4555443  1 25566666666555              2211111 11 67777


Q ss_pred             EEEEEeCCCccchhhhhhhcccCceEEEeccccccccccchhhccccccCcccEEEeCCcccccccccCCCCcccccccc
Q 036454          171 ILHFISDGSDFFQVGLLQNIHNLEKLVLSTCEYKKIFSCEEVEEHAEGIAQIKSLKLKKLWLIEEHLWNPDSKLDSFLQN  250 (410)
Q Consensus       171 ~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~  250 (410)
                      .|++........+.  +..+++|+.|++++|.+..+..       +..+++|+.|+++++...  .     ...+..+++
T Consensus       159 ~L~l~~~~~~~~~~--~~~l~~L~~L~l~~n~l~~~~~-------~~~l~~L~~L~l~~n~l~--~-----~~~~~~~~~  222 (347)
T 4fmz_A          159 YLTVTESKVKDVTP--IANLTDLYSLSLNYNQIEDISP-------LASLTSLHYFTAYVNQIT--D-----ITPVANMTR  222 (347)
T ss_dssp             EEECCSSCCCCCGG--GGGCTTCSEEECTTSCCCCCGG-------GGGCTTCCEEECCSSCCC--C-----CGGGGGCTT
T ss_pred             EEEecCCCcCCchh--hccCCCCCEEEccCCccccccc-------ccCCCccceeecccCCCC--C-----CchhhcCCc
Confidence            77775555544442  6778889999988887766543       566788888888884322  1     123677888


Q ss_pred             ceEEEEecccccccccccCccccCccCEEEEcccCCcccccchhhhhcCCCccEEEeccCcccchhccccCCCCcccccc
Q 036454          251 LEFLEVKKCALSLISLVPSSASFRNLTVLKVCNCWQLISLVTPQTAKTLVQLRELRVSECNRLEEIVANDGDADDEIVFS  330 (410)
Q Consensus       251 L~~L~l~~~~~~l~~l~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~  330 (410)
                      |++|++++|  .++.++. +..+++|++|++++| .+..++   ....+++|++|++++| .++.++ .+..      ++
T Consensus       223 L~~L~l~~n--~l~~~~~-~~~l~~L~~L~l~~n-~l~~~~---~~~~l~~L~~L~l~~n-~l~~~~-~~~~------l~  287 (347)
T 4fmz_A          223 LNSLKIGNN--KITDLSP-LANLSQLTWLEIGTN-QISDIN---AVKDLTKLKMLNVGSN-QISDIS-VLNN------LS  287 (347)
T ss_dssp             CCEEECCSS--CCCCCGG-GTTCTTCCEEECCSS-CCCCCG---GGTTCTTCCEEECCSS-CCCCCG-GGGG------CT
T ss_pred             CCEEEccCC--ccCCCcc-hhcCCCCCEEECCCC-ccCCCh---hHhcCCCcCEEEccCC-ccCCCh-hhcC------CC
Confidence            999999888  5666555 677888999999877 455552   4577888999999886 444442 3444      88


Q ss_pred             ccceeecCcCcccceecCCCcccCCCCccEEEEecCCCCcccCCCCCCCCCcceeEeccc
Q 036454          331 KLKWLFLESSESITSFCSGNYAFSFPSLEDLIVENCPKLNTFSAGVLKTPRLQAVQNWEL  390 (410)
Q Consensus       331 ~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~L~~l~~~~~  390 (410)
                      +|+.|++++|. ++..... .+..+++|++|++++|+ +..++. ...+++|++++++++
T Consensus       288 ~L~~L~L~~n~-l~~~~~~-~l~~l~~L~~L~L~~n~-l~~~~~-~~~l~~L~~L~l~~N  343 (347)
T 4fmz_A          288 QLNSLFLNNNQ-LGNEDME-VIGGLTNLTTLFLSQNH-ITDIRP-LASLSKMDSADFANQ  343 (347)
T ss_dssp             TCSEEECCSSC-CCGGGHH-HHHTCTTCSEEECCSSS-CCCCGG-GGGCTTCSEESSSCC
T ss_pred             CCCEEECcCCc-CCCcChh-HhhccccCCEEEccCCc-cccccC-hhhhhccceeehhhh
Confidence            89999999874 4444332 23458899999998886 444444 556888999988743

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=99.93  E-value=1.9e-24  Score=215.08  Aligned_cols=185  Identities=16%  Similarity=0.170  Sum_probs=126.7

Q ss_pred             cccCccccccccccCCcEEEecCccccccccccCCccccccCcccEEEeccCcCccccCchhHHhhhhccceEeeccccC
Q 036454            6 QEVNSEETHSGAATQLRELHVFHLPKLTKLWNKDPQGKLIFRNLVVVRIFDCQSLKNIFPTSIARSLLRLETLSIKDCGS   85 (410)
Q Consensus         6 ~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~   85 (410)
                      +.....+.+-+.+++|++|+++++. ++.+.   |..+..+++|++|++++| .+..+++..+ .++++|++|+++++. 
T Consensus        13 ~~~~l~~ip~~~~~~L~~L~Ls~n~-l~~~~---~~~~~~l~~L~~L~Ls~n-~i~~~~~~~~-~~l~~L~~L~Ls~n~-   85 (549)
T 2z81_A           13 RSRSFTSIPSGLTAAMKSLDLSFNK-ITYIG---HGDLRACANLQVLILKSS-RINTIEGDAF-YSLGSLEHLDLSDNH-   85 (549)
T ss_dssp             TTSCCSSCCSCCCTTCCEEECCSSC-CCEEC---SSTTSSCTTCCEEECTTS-CCCEECTTTT-TTCTTCCEEECTTSC-
T ss_pred             CCCccccccccCCCCccEEECcCCc-cCccC---hhhhhcCCcccEEECCCC-CcCccChhhc-cccccCCEEECCCCc-
Confidence            3333344444455788999988874 44332   455678888999999888 5666655444 588889999988886 


Q ss_pred             cceEeccCCCCCCCcccccCCCccEEeeccCCCccccccCcccCCCCCceEEEEccC-----------CccccccEEEee
Q 036454           86 VEEIVANDGRGNDAATKFIFPSLTFLRLRDLPDLTTFYSGMHILECPELRKLEVNHV-----------DVFANLEELTLS  154 (410)
Q Consensus        86 l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~~-----------~~l~~L~~L~i~  154 (410)
                      +..++.        ..+..+++|++|+++++ .+..+.....-..+++|++|++.++           ..+++|++|+++
T Consensus        86 l~~~~~--------~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~  156 (549)
T 2z81_A           86 LSSLSS--------SWFGPLSSLKYLNLMGN-PYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIK  156 (549)
T ss_dssp             CCSCCH--------HHHTTCTTCCEEECTTC-CCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEE
T ss_pred             cCccCH--------HHhccCCCCcEEECCCC-cccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeecc
Confidence            665554        13677888888888887 4443321111136788888888776           335678888888


Q ss_pred             ccCcccccccc---cccccEEEEEeCCCccchhhhhhhcccCceEEEeccccccc
Q 036454          155 KCIFTTWRQAQ---FHKLKILHFISDGSDFFQVGLLQNIHNLEKLVLSTCEYKKI  206 (410)
Q Consensus       155 ~~~~~~~~~~~---l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~  206 (410)
                      +|.+....+..   +++|+.|++........+...+..+++|+.|++++|.+...
T Consensus       157 ~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~  211 (549)
T 2z81_A          157 ALSLRNYQSQSLKSIRDIHHLTLHLSESAFLLEIFADILSSVRYLELRDTNLARF  211 (549)
T ss_dssp             ETTCCEECTTTTTTCSEEEEEEEECSBSTTHHHHHHHSTTTBSEEEEESCBCTTC
T ss_pred             CCcccccChhhhhccccCceEecccCcccccchhhHhhcccccEEEccCCccccc
Confidence            88877655544   67788888866666666665566788888888888876553

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=99.93  E-value=2.5e-24  Score=215.15  Aligned_cols=133  Identities=17%  Similarity=0.126  Sum_probs=86.0

Q ss_pred             ccccccceEEEEecccccccccc--cCccccCccCEEEEcccCCcccccchhhhhcCCCccEEEeccCccc-chhccccC
Q 036454          245 DSFLQNLEFLEVKKCALSLISLV--PSSASFRNLTVLKVCNCWQLISLVTPQTAKTLVQLRELRVSECNRL-EEIVANDG  321 (410)
Q Consensus       245 ~~~~~~L~~L~l~~~~~~l~~l~--~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l-~~~~~~~~  321 (410)
                      +..+++|++|++++|.  +...+  ..+..+++|++|++++|. +..... .....+++|++|++++|.-. ..++..++
T Consensus       392 ~~~l~~L~~L~l~~n~--l~~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~-~~~~~l~~L~~L~l~~n~l~~~~~p~~~~  467 (570)
T 2z63_A          392 FLGLEQLEHLDFQHSN--LKQMSEFSVFLSLRNLIYLDISHTH-TRVAFN-GIFNGLSSLEVLKMAGNSFQENFLPDIFT  467 (570)
T ss_dssp             EETCTTCCEEECTTSE--EESCTTSCTTTTCTTCCEEECTTSC-CEECCT-TTTTTCTTCCEEECTTCEEGGGEECSCCT
T ss_pred             ccccCCCCEEEccCCc--cccccchhhhhcCCCCCEEeCcCCc-ccccch-hhhhcCCcCcEEECcCCcCccccchhhhh
Confidence            4556667777776663  33332  234567777777777663 333321 34466788888888877543 24556666


Q ss_pred             CCCccccccccceeecCcCcccceecCCCcccCCCCccEEEEecCCCCcccC-CCCCCCCCcceeEeccc
Q 036454          322 DADDEIVFSKLKWLFLESSESITSFCSGNYAFSFPSLEDLIVENCPKLNTFS-AGVLKTPRLQAVQNWEL  390 (410)
Q Consensus       322 ~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~-~~~~~~~~L~~l~~~~~  390 (410)
                      .      +++|+.|++++|. ++.+... .+..+++|++|++++| .+..++ ..+..+++|+++++++|
T Consensus       468 ~------l~~L~~L~l~~n~-l~~~~~~-~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~N  528 (570)
T 2z63_A          468 E------LRNLTFLDLSQCQ-LEQLSPT-AFNSLSSLQVLNMASN-QLKSVPDGIFDRLTSLQKIWLHTN  528 (570)
T ss_dssp             T------CTTCCEEECTTSC-CCEECTT-TTTTCTTCCEEECCSS-CCSCCCTTTTTTCTTCCEEECCSS
T ss_pred             c------ccCCCEEECCCCc-cccCChh-hhhcccCCCEEeCCCC-cCCCCCHHHhhcccCCcEEEecCC
Confidence            6      8888888888864 5665433 2346888999999887 455554 44567888999998843

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=99.92  E-value=9.3e-25  Score=220.65  Aligned_cols=152  Identities=16%  Similarity=0.087  Sum_probs=91.3

Q ss_pred             cCcccEEEeCCcccccccccCCCCccccccccceEEEEecccccccccccCccc--------cCccCEEEEcccCCcccc
Q 036454          219 IAQIKSLKLKKLWLIEEHLWNPDSKLDSFLQNLEFLEVKKCALSLISLVPSSAS--------FRNLTVLKVCNCWQLISL  290 (410)
Q Consensus       219 l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~l~~l~~~~~~--------~~~L~~L~l~~c~~l~~~  290 (410)
                      +++|++|+++++     .+.......+..+++|++|++++|  .++.++.....        +++|++|+++++ ++..+
T Consensus       432 ~~~L~~L~Ls~N-----~l~~lp~~~~~~l~~L~~L~Ls~N--~l~~i~~~~~~~~~~~~~~l~~L~~L~Ls~N-~l~~l  503 (636)
T 4eco_A          432 GINVSSINLSNN-----QISKFPKELFSTGSPLSSINLMGN--MLTEIPKNSLKDENENFKNTYLLTSIDLRFN-KLTKL  503 (636)
T ss_dssp             CCCEEEEECCSS-----CCCSCCTHHHHTTCCCSEEECCSS--CCSBCCSSSSEETTEECTTGGGCCEEECCSS-CCCBC
T ss_pred             CCCCCEEECcCC-----ccCcCCHHHHccCCCCCEEECCCC--CCCCcCHHHhccccccccccCCccEEECcCC-cCCcc
Confidence            346666666652     222112223445677777777777  45455543322        127888888766 46555


Q ss_pred             cchhhhhcCCCccEEEeccCcccchhccccCCCCccccccccceeecCcCc-----c-cceecCCCcccCCCCccEEEEe
Q 036454          291 VTPQTAKTLVQLRELRVSECNRLEEIVANDGDADDEIVFSKLKWLFLESSE-----S-ITSFCSGNYAFSFPSLEDLIVE  364 (410)
Q Consensus       291 ~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~L~~L~l~~c~-----~-l~~~~~~~~~~~~~~L~~L~l~  364 (410)
                      +.......+++|++|+++++ .++.++..+..      +++|+.|+++++.     . ...++.  .+..+++|++|+++
T Consensus       504 p~~~~~~~l~~L~~L~Ls~N-~l~~ip~~~~~------l~~L~~L~Ls~N~~ls~N~l~~~~p~--~l~~l~~L~~L~Ls  574 (636)
T 4eco_A          504 SDDFRATTLPYLVGIDLSYN-SFSKFPTQPLN------SSTLKGFGIRNQRDAQGNRTLREWPE--GITLCPSLTQLQIG  574 (636)
T ss_dssp             CGGGSTTTCTTCCEEECCSS-CCSSCCCGGGG------CSSCCEEECCSCBCTTCCBCCCCCCT--TGGGCSSCCEEECC
T ss_pred             ChhhhhccCCCcCEEECCCC-CCCCcChhhhc------CCCCCEEECCCCcccccCcccccChH--HHhcCCCCCEEECC
Confidence            53111137788888888875 44446666666      7888888885432     1 222322  23457888888888


Q ss_pred             cCCCCcccCCCCCCCCCcceeEeccc
Q 036454          365 NCPKLNTFSAGVLKTPRLQAVQNWEL  390 (410)
Q Consensus       365 ~c~~l~~~~~~~~~~~~L~~l~~~~~  390 (410)
                      +|.- ..+|..+.  ++|++|++++|
T Consensus       575 ~N~l-~~ip~~~~--~~L~~L~Ls~N  597 (636)
T 4eco_A          575 SNDI-RKVNEKIT--PNISVLDIKDN  597 (636)
T ss_dssp             SSCC-CBCCSCCC--TTCCEEECCSC
T ss_pred             CCcC-CccCHhHh--CcCCEEECcCC
Confidence            7744 77877653  78888888754

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=99.92  E-value=2.3e-23  Score=203.03  Aligned_cols=317  Identities=20%  Similarity=0.253  Sum_probs=241.9

Q ss_pred             ccccccCCcEEEecCccccccccccCCccccccCcccEEEeccCcCccccCchhHHhhhhccceEeeccccCcceEeccC
Q 036454           14 HSGAATQLRELHVFHLPKLTKLWNKDPQGKLIFRNLVVVRIFDCQSLKNIFPTSIARSLLRLETLSIKDCGSVEEIVAND   93 (410)
Q Consensus        14 ~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~   93 (410)
                      ....+++++.|++.++. ++.+     +++..+++|++|++++| .+..+++   +.++++|++|+++++. +..++   
T Consensus        41 ~~~~l~~l~~L~l~~~~-i~~l-----~~~~~l~~L~~L~Ls~n-~l~~~~~---~~~l~~L~~L~l~~n~-l~~~~---  106 (466)
T 1o6v_A           41 SQTDLDQVTTLQADRLG-IKSI-----DGVEYLNNLTQINFSNN-QLTDITP---LKNLTKLVDILMNNNQ-IADIT---  106 (466)
T ss_dssp             CHHHHHTCCEEECCSSC-CCCC-----TTGGGCTTCCEEECCSS-CCCCCGG---GTTCTTCCEEECCSSC-CCCCG---
T ss_pred             ChhHhccccEEecCCCC-CccC-----cchhhhcCCCEEECCCC-ccCCchh---hhccccCCEEECCCCc-cccCh---
Confidence            34558999999999884 3332     34678999999999999 5666655   2799999999999986 65554   


Q ss_pred             CCCCCCcccccCCCccEEeeccCCCccccccCcccCCCCCceEEEEccC--------CccccccEEEeeccCcccccccc
Q 036454           94 GRGNDAATKFIFPSLTFLRLRDLPDLTTFYSGMHILECPELRKLEVNHV--------DVFANLEELTLSKCIFTTWRQAQ  165 (410)
Q Consensus        94 ~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~~--------~~l~~L~~L~i~~~~~~~~~~~~  165 (410)
                             .+..+++|++|+++++ .+..++.  + ..+++|++|++++|        ..+++|+.|++++ ......+..
T Consensus       107 -------~~~~l~~L~~L~L~~n-~l~~~~~--~-~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~-~~~~~~~~~  174 (466)
T 1o6v_A          107 -------PLANLTNLTGLTLFNN-QITDIDP--L-KNLTNLNRLELSSNTISDISALSGLTSLQQLSFGN-QVTDLKPLA  174 (466)
T ss_dssp             -------GGTTCTTCCEEECCSS-CCCCCGG--G-TTCTTCSEEEEEEEEECCCGGGTTCTTCSEEEEEE-SCCCCGGGT
T ss_pred             -------hhcCCCCCCEEECCCC-CCCCChH--H-cCCCCCCEEECCCCccCCChhhccCCcccEeecCC-cccCchhhc
Confidence                   3667899999999998 6666654  2 47899999999988        5568899999974 333333333


Q ss_pred             -cccccEEEEEeCCCccchhhhhhhcccCceEEEeccccccccccchhhccccccCcccEEEeCCcccccccccCCCCcc
Q 036454          166 -FHKLKILHFISDGSDFFQVGLLQNIHNLEKLVLSTCEYKKIFSCEEVEEHAEGIAQIKSLKLKKLWLIEEHLWNPDSKL  244 (410)
Q Consensus       166 -l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~  244 (410)
                       +++|+.|+++.......+  .+.++++|+.|++++|.+....+       ...+++|+.|+++++.-.  .     ...
T Consensus       175 ~l~~L~~L~l~~n~l~~~~--~l~~l~~L~~L~l~~n~l~~~~~-------~~~l~~L~~L~l~~n~l~--~-----~~~  238 (466)
T 1o6v_A          175 NLTTLERLDISSNKVSDIS--VLAKLTNLESLIATNNQISDITP-------LGILTNLDELSLNGNQLK--D-----IGT  238 (466)
T ss_dssp             TCTTCCEEECCSSCCCCCG--GGGGCTTCSEEECCSSCCCCCGG-------GGGCTTCCEEECCSSCCC--C-----CGG
T ss_pred             cCCCCCEEECcCCcCCCCh--hhccCCCCCEEEecCCccccccc-------ccccCCCCEEECCCCCcc--c-----chh
Confidence             899999999666666654  47889999999999998776654       566899999999985322  1     235


Q ss_pred             ccccccceEEEEecccccccccccCccccCccCEEEEcccCCcccccchhhhhcCCCccEEEeccCcccchhccccCCCC
Q 036454          245 DSFLQNLEFLEVKKCALSLISLVPSSASFRNLTVLKVCNCWQLISLVTPQTAKTLVQLRELRVSECNRLEEIVANDGDAD  324 (410)
Q Consensus       245 ~~~~~~L~~L~l~~~~~~l~~l~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~  324 (410)
                      +..+++|++|++++|  .+..+++ +..+++|++|+++++ .+..++.   ...+++|++|++++|. ++.++. ++.  
T Consensus       239 l~~l~~L~~L~l~~n--~l~~~~~-~~~l~~L~~L~l~~n-~l~~~~~---~~~l~~L~~L~L~~n~-l~~~~~-~~~--  307 (466)
T 1o6v_A          239 LASLTNLTDLDLANN--QISNLAP-LSGLTKLTELKLGAN-QISNISP---LAGLTALTNLELNENQ-LEDISP-ISN--  307 (466)
T ss_dssp             GGGCTTCSEEECCSS--CCCCCGG-GTTCTTCSEEECCSS-CCCCCGG---GTTCTTCSEEECCSSC-CSCCGG-GGG--
T ss_pred             hhcCCCCCEEECCCC--ccccchh-hhcCCCCCEEECCCC-ccCcccc---ccCCCccCeEEcCCCc-ccCchh-hcC--
Confidence            778999999999999  4655554 678899999999887 4666542   5789999999999874 444433 455  


Q ss_pred             ccccccccceeecCcCcccceecCCCcccCCCCccEEEEecCCCCcccCCCCCCCCCcceeEecccchh
Q 036454          325 DEIVFSKLKWLFLESSESITSFCSGNYAFSFPSLEDLIVENCPKLNTFSAGVLKTPRLQAVQNWELGED  393 (410)
Q Consensus       325 ~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~L~~l~~~~~~~~  393 (410)
                          +++|+.|+++++. +++...   ...+++|++|++++| .+..++ .+..+++|++++++++.-.
T Consensus       308 ----l~~L~~L~L~~n~-l~~~~~---~~~l~~L~~L~l~~n-~l~~~~-~l~~l~~L~~L~l~~n~l~  366 (466)
T 1o6v_A          308 ----LKNLTYLTLYFNN-ISDISP---VSSLTKLQRLFFYNN-KVSDVS-SLANLTNINWLSAGHNQIS  366 (466)
T ss_dssp             ----CTTCSEEECCSSC-CSCCGG---GGGCTTCCEEECCSS-CCCCCG-GGTTCTTCCEEECCSSCCC
T ss_pred             ----CCCCCEEECcCCc-CCCchh---hccCccCCEeECCCC-ccCCch-hhccCCCCCEEeCCCCccC
Confidence                8999999999974 555543   346999999999998 556564 4557999999999855433

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=99.92  E-value=5.6e-24  Score=214.93  Aligned_cols=316  Identities=13%  Similarity=0.147  Sum_probs=152.0

Q ss_pred             ccccccCCcEEEecCccccccc-----ccc---------CCcccc--ccCcccEEEeccCcCccccCchhHHhhhhccce
Q 036454           14 HSGAATQLRELHVFHLPKLTKL-----WNK---------DPQGKL--IFRNLVVVRIFDCQSLKNIFPTSIARSLLRLET   77 (410)
Q Consensus        14 ~~~~~~~L~~L~l~~~~~l~~~-----~~~---------~~~~~~--~l~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~   77 (410)
                      .++++++|++|+++++. ++..     |..         .|..++  .+++|++|++++|.....+| ..+ +++++|++
T Consensus       201 ~l~~l~~L~~L~Ls~n~-l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p-~~l-~~l~~L~~  277 (636)
T 4eco_A          201 AVMRLTKLRQFYMGNSP-FVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLP-TFL-KALPEMQL  277 (636)
T ss_dssp             GGGGCTTCCEEEEESCC-CCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCC-TTT-TTCSSCCE
T ss_pred             HHhcccCCCEEECcCCc-cccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccCh-HHH-hcCCCCCE
Confidence            37778888888888874 3320     100         377777  88888888888885444443 333 57788888


Q ss_pred             EeeccccCcc--eEeccCCCCCCCcccccC------CCccEEeeccCCCcccccc--Ccc--------------------
Q 036454           78 LSIKDCGSVE--EIVANDGRGNDAATKFIF------PSLTFLRLRDLPDLTTFYS--GMH--------------------  127 (410)
Q Consensus        78 L~l~~~~~l~--~~~~~~~~~~~~~~~~~l------~~L~~L~l~~~~~l~~~~~--~~~--------------------  127 (410)
                      |+++++..+.  .+|.         .+..+      ++|++|+++++ .+..++.  ...                    
T Consensus       278 L~Ls~n~~l~~~~lp~---------~~~~L~~~~~l~~L~~L~L~~n-~l~~ip~~~~l~~l~~L~~L~L~~N~l~g~ip  347 (636)
T 4eco_A          278 INVACNRGISGEQLKD---------DWQALADAPVGEKIQIIYIGYN-NLKTFPVETSLQKMKKLGMLECLYNQLEGKLP  347 (636)
T ss_dssp             EECTTCTTSCHHHHHH---------HHHHHHHSGGGGTCCEEECCSS-CCSSCCCHHHHTTCTTCCEEECCSCCCEEECC
T ss_pred             EECcCCCCCccccchH---------HHHhhhccccCCCCCEEECCCC-cCCccCchhhhccCCCCCEEeCcCCcCccchh
Confidence            8887775233  2443         23332      55555555555 3333332  110                    


Q ss_pred             -cCCCCCceEEEEccC---------Ccccc-ccEEEeeccCcccccccc----cccccEEEEEeCCCccchhhhhh----
Q 036454          128 -ILECPELRKLEVNHV---------DVFAN-LEELTLSKCIFTTWRQAQ----FHKLKILHFISDGSDFFQVGLLQ----  188 (410)
Q Consensus       128 -~~~~~~L~~L~l~~~---------~~l~~-L~~L~i~~~~~~~~~~~~----l~~L~~L~l~~~~~~~~~~~~l~----  188 (410)
                       -..+++|++|+++++         ..+++ |++|++++|.+..++...    +++|+.|+++...+.......+.    
T Consensus       348 ~~~~l~~L~~L~L~~N~l~~lp~~l~~l~~~L~~L~Ls~N~l~~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~  427 (636)
T 4eco_A          348 AFGSEIKLASLNLAYNQITEIPANFCGFTEQVENLSFAHNKLKYIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDP  427 (636)
T ss_dssp             CCEEEEEESEEECCSSEEEECCTTSEEECTTCCEEECCSSCCSSCCSCCCTTCSSCEEEEECCSSCTTTTTTCSSCTTCS
T ss_pred             hhCCCCCCCEEECCCCccccccHhhhhhcccCcEEEccCCcCcccchhhhhcccCccCEEECcCCcCCCcchhhhccccc
Confidence             012333333433333         11223 444444444433222211    12344444432222221111122    


Q ss_pred             ---hcccCceEEEeccccccccccchhhccccccCcccEEEeCCcccccccccCCCCcccc-------ccccceEEEEec
Q 036454          189 ---NIHNLEKLVLSTCEYKKIFSCEEVEEHAEGIAQIKSLKLKKLWLIEEHLWNPDSKLDS-------FLQNLEFLEVKK  258 (410)
Q Consensus       189 ---~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~-------~~~~L~~L~l~~  258 (410)
                         .+++|+.|++++|.+..+..     ..+..+++|++|+++++...  .+   ......       .+++|++|++++
T Consensus       428 ~~~~~~~L~~L~Ls~N~l~~lp~-----~~~~~l~~L~~L~Ls~N~l~--~i---~~~~~~~~~~~~~~l~~L~~L~Ls~  497 (636)
T 4eco_A          428 TPFKGINVSSINLSNNQISKFPK-----ELFSTGSPLSSINLMGNMLT--EI---PKNSLKDENENFKNTYLLTSIDLRF  497 (636)
T ss_dssp             SCCCCCCEEEEECCSSCCCSCCT-----HHHHTTCCCSEEECCSSCCS--BC---CSSSSEETTEECTTGGGCCEEECCS
T ss_pred             ccccCCCCCEEECcCCccCcCCH-----HHHccCCCCCEEECCCCCCC--Cc---CHHHhccccccccccCCccEEECcC
Confidence               33455555555554443322     11233566666666653211  11   111111       122666666666


Q ss_pred             ccccccccccCcc--ccCccCEEEEcccCCcccccchhhhhcCCCccEEEecc------CcccchhccccCCCCcccccc
Q 036454          259 CALSLISLVPSSA--SFRNLTVLKVCNCWQLISLVTPQTAKTLVQLRELRVSE------CNRLEEIVANDGDADDEIVFS  330 (410)
Q Consensus       259 ~~~~l~~l~~~~~--~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~------c~~l~~~~~~~~~~~~~~~~~  330 (410)
                      |  .++.++..+.  .+++|++|+++++ .+..++  .....+++|++|++++      +.-...++..++.      ++
T Consensus       498 N--~l~~lp~~~~~~~l~~L~~L~Ls~N-~l~~ip--~~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~~l~~------l~  566 (636)
T 4eco_A          498 N--KLTKLSDDFRATTLPYLVGIDLSYN-SFSKFP--TQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITL------CP  566 (636)
T ss_dssp             S--CCCBCCGGGSTTTCTTCCEEECCSS-CCSSCC--CGGGGCSSCCEEECCSCBCTTCCBCCCCCCTTGGG------CS
T ss_pred             C--cCCccChhhhhccCCCcCEEECCCC-CCCCcC--hhhhcCCCCCEEECCCCcccccCcccccChHHHhc------CC
Confidence            6  3445555444  5666666666554 344443  2334566666666643      2223344444444      66


Q ss_pred             ccceeecCcCcccceecCCCcccCCCCccEEEEecCCC
Q 036454          331 KLKWLFLESSESITSFCSGNYAFSFPSLEDLIVENCPK  368 (410)
Q Consensus       331 ~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~l~~c~~  368 (410)
                      +|+.|+++++. ++.++...    .++|++|++++|+.
T Consensus       567 ~L~~L~Ls~N~-l~~ip~~~----~~~L~~L~Ls~N~l  599 (636)
T 4eco_A          567 SLTQLQIGSND-IRKVNEKI----TPNISVLDIKDNPN  599 (636)
T ss_dssp             SCCEEECCSSC-CCBCCSCC----CTTCCEEECCSCTT
T ss_pred             CCCEEECCCCc-CCccCHhH----hCcCCEEECcCCCC
Confidence            66666666643 35554432    35666666666543

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=99.92  E-value=7.6e-24  Score=218.45  Aligned_cols=350  Identities=15%  Similarity=0.111  Sum_probs=245.4

Q ss_pred             ccccccCCcEEEecCcccccc-----ccc---------cCCcccc--ccCcccEEEeccCcCccccCchhHHhhhhccce
Q 036454           14 HSGAATQLRELHVFHLPKLTK-----LWN---------KDPQGKL--IFRNLVVVRIFDCQSLKNIFPTSIARSLLRLET   77 (410)
Q Consensus        14 ~~~~~~~L~~L~l~~~~~l~~-----~~~---------~~~~~~~--~l~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~   77 (410)
                      .++++++|+.|+++++. ++.     .|.         ..|..++  .+++|++|++++|.....+| ..+ +++++|++
T Consensus       443 ~l~~L~~L~~L~Ls~N~-Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP-~~l-~~L~~L~~  519 (876)
T 4ecn_A          443 AIQRLTKLQIIYFANSP-FTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLP-DFL-YDLPELQS  519 (876)
T ss_dssp             GGGGCTTCCEEEEESCC-CCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCC-GGG-GGCSSCCE
T ss_pred             HHhcCCCCCEEECcCCc-CCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccCh-HHH-hCCCCCCE
Confidence            48889999999999985 333     011         1488877  99999999999996555554 333 79999999


Q ss_pred             EeeccccCcc--eEeccCCCCCCCcccccCCCccEEeeccCCCcccccc-CcccCCCCCceEEEEccC--------Cccc
Q 036454           78 LSIKDCGSVE--EIVANDGRGNDAATKFIFPSLTFLRLRDLPDLTTFYS-GMHILECPELRKLEVNHV--------DVFA  146 (410)
Q Consensus        78 L~l~~~~~l~--~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~-~~~~~~~~~L~~L~l~~~--------~~l~  146 (410)
                      |+++++..+.  .+|.... .. ......+++|+.|+++++ .+..+|. ..+ ..+++|+.|+++++        ..++
T Consensus       520 L~Ls~N~~lsg~~iP~~i~-~L-~~~~~~l~~L~~L~Ls~N-~L~~ip~~~~l-~~L~~L~~L~Ls~N~l~~lp~~~~L~  595 (876)
T 4ecn_A          520 LNIACNRGISAAQLKADWT-RL-ADDEDTGPKIQIFYMGYN-NLEEFPASASL-QKMVKLGLLDCVHNKVRHLEAFGTNV  595 (876)
T ss_dssp             EECTTCTTSCHHHHHHHHH-HH-HHCTTTTTTCCEEECCSS-CCCBCCCHHHH-TTCTTCCEEECTTSCCCBCCCCCTTS
T ss_pred             EECcCCCCcccccchHHHH-hh-hhcccccCCccEEEeeCC-cCCccCChhhh-hcCCCCCEEECCCCCcccchhhcCCC
Confidence            9999985344  3554100 00 002234569999999998 5556665 122 37899999999988        4567


Q ss_pred             cccEEEeeccCcccccccc--ccc-ccEEEEEeCCCccchhhhhhhc--ccCceEEEeccccccccccchhhccccccCc
Q 036454          147 NLEELTLSKCIFTTWRQAQ--FHK-LKILHFISDGSDFFQVGLLQNI--HNLEKLVLSTCEYKKIFSCEEVEEHAEGIAQ  221 (410)
Q Consensus       147 ~L~~L~i~~~~~~~~~~~~--l~~-L~~L~l~~~~~~~~~~~~l~~l--~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~  221 (410)
                      +|+.|++++|.+..++...  +++ |+.|+++.+.+..+|. .+..+  ++|+.|++++|.+....+..........+++
T Consensus       596 ~L~~L~Ls~N~l~~lp~~l~~l~~~L~~L~Ls~N~L~~lp~-~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~  674 (876)
T 4ecn_A          596 KLTDLKLDYNQIEEIPEDFCAFTDQVEGLGFSHNKLKYIPN-IFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGIN  674 (876)
T ss_dssp             EESEEECCSSCCSCCCTTSCEECTTCCEEECCSSCCCSCCS-CCCTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCC
T ss_pred             cceEEECcCCccccchHHHhhccccCCEEECcCCCCCcCch-hhhccccCCCCEEECcCCcCCCccccchhhhccccCCC
Confidence            8999999999988555433  777 9999997666666663 33444  4599999999987654331000011123468


Q ss_pred             ccEEEeCCcccccccccCCCCccccccccceEEEEecccccccccccCccc--------cCccCEEEEcccCCcccccch
Q 036454          222 IKSLKLKKLWLIEEHLWNPDSKLDSFLQNLEFLEVKKCALSLISLVPSSAS--------FRNLTVLKVCNCWQLISLVTP  293 (410)
Q Consensus       222 L~~L~l~~c~~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~l~~l~~~~~~--------~~~L~~L~l~~c~~l~~~~~~  293 (410)
                      |+.|+++++     .+..........+++|+.|++++|  .+..++.....        +++|++|++++| ++..++..
T Consensus       675 L~~L~Ls~N-----~L~~lp~~~~~~l~~L~~L~Ls~N--~L~~ip~~~~~~~~~~l~nl~~L~~L~Ls~N-~L~~lp~~  746 (876)
T 4ecn_A          675 ASTVTLSYN-----EIQKFPTELFATGSPISTIILSNN--LMTSIPENSLKPKDGNYKNTYLLTTIDLRFN-KLTSLSDD  746 (876)
T ss_dssp             EEEEECCSS-----CCCSCCHHHHHTTCCCSEEECCSC--CCSCCCTTSSSCTTSCCTTGGGCCEEECCSS-CCCCCCGG
T ss_pred             cCEEEccCC-----cCCccCHHHHccCCCCCEEECCCC--cCCccChHHhccccccccccCCccEEECCCC-CCccchHH
Confidence            999999984     332122233457899999999999  56677764433        338999999888 57777632


Q ss_pred             hhhhcCCCccEEEeccCcccchhccccCCCCccccccccceeecCcCc-----ccc-eecCCCcccCCCCccEEEEecCC
Q 036454          294 QTAKTLVQLRELRVSECNRLEEIVANDGDADDEIVFSKLKWLFLESSE-----SIT-SFCSGNYAFSFPSLEDLIVENCP  367 (410)
Q Consensus       294 ~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~L~~L~l~~c~-----~l~-~~~~~~~~~~~~~L~~L~l~~c~  367 (410)
                      .....+++|+.|++++| .+..++..+..      +++|+.|++++++     .+. .++.  .+..+++|++|++++|.
T Consensus       747 l~~~~l~~L~~L~Ls~N-~L~~lp~~l~~------L~~L~~L~Ls~N~~ls~N~l~~~ip~--~l~~L~~L~~L~Ls~N~  817 (876)
T 4ecn_A          747 FRATTLPYLSNMDVSYN-CFSSFPTQPLN------SSQLKAFGIRHQRDAEGNRILRQWPT--GITTCPSLIQLQIGSND  817 (876)
T ss_dssp             GSTTTCTTCCEEECCSS-CCSSCCCGGGG------CTTCCEEECCCCBCTTCCBCCCCCCT--TGGGCSSCCEEECCSSC
T ss_pred             hhhccCCCcCEEEeCCC-CCCccchhhhc------CCCCCEEECCCCCCcccccccccChH--HHhcCCCCCEEECCCCC
Confidence            21148999999999986 55567777777      9999999998743     222 3332  23569999999999985


Q ss_pred             CCcccCCCCCCCCCcceeEecccc
Q 036454          368 KLNTFSAGVLKTPRLQAVQNWELG  391 (410)
Q Consensus       368 ~l~~~~~~~~~~~~L~~l~~~~~~  391 (410)
                      - ..+|..+.  ++|+.|++++|.
T Consensus       818 L-~~Ip~~l~--~~L~~LdLs~N~  838 (876)
T 4ecn_A          818 I-RKVDEKLT--PQLYILDIADNP  838 (876)
T ss_dssp             C-CBCCSCCC--SSSCEEECCSCT
T ss_pred             C-CccCHhhc--CCCCEEECCCCC
Confidence            5 88998864  799999998554

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=99.92  E-value=6.6e-23  Score=209.20  Aligned_cols=129  Identities=19%  Similarity=0.164  Sum_probs=67.7

Q ss_pred             cccccCCcEEEecCccccccccccCCccccccCcccEEEeccCcCccccCchhHHhhhhccceEeeccccCcceEeccCC
Q 036454           15 SGAATQLRELHVFHLPKLTKLWNKDPQGKLIFRNLVVVRIFDCQSLKNIFPTSIARSLLRLETLSIKDCGSVEEIVANDG   94 (410)
Q Consensus        15 ~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~   94 (410)
                      ++.+++|++|+++++. ++.+   .|..+..+++|++|++++| .+..+++..+ +++++|++|+++++. +..++.   
T Consensus        45 ~~~l~~L~~L~Ls~n~-l~~~---~~~~~~~l~~L~~L~L~~n-~l~~l~~~~~-~~l~~L~~L~L~~n~-l~~~~~---  114 (680)
T 1ziw_A           45 FTRYSQLTSLDVGFNT-ISKL---EPELCQKLPMLKVLNLQHN-ELSQLSDKTF-AFCTNLTELHLMSNS-IQKIKN---  114 (680)
T ss_dssp             GGGGTTCSEEECCSSC-CCCC---CTTHHHHCTTCCEEECCSS-CCCCCCTTTT-TTCTTCSEEECCSSC-CCCCCS---
T ss_pred             HhCCCcCcEEECCCCc-cCcc---CHHHHhcccCcCEEECCCC-ccCccChhhh-ccCCCCCEEECCCCc-cCccCh---
Confidence            5556666666666552 2221   1344456666666666666 4444444322 456666666666654 444432   


Q ss_pred             CCCCCcccccCCCccEEeeccCCCccccccCcccCCCCCceEEEEccC------------CccccccEEEeeccCccc
Q 036454           95 RGNDAATKFIFPSLTFLRLRDLPDLTTFYSGMHILECPELRKLEVNHV------------DVFANLEELTLSKCIFTT  160 (410)
Q Consensus        95 ~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~~------------~~l~~L~~L~i~~~~~~~  160 (410)
                           ..+..+++|++|+++++ .+...+...+ ..+++|++|++.++            ...++|++|++++|.+..
T Consensus       115 -----~~~~~l~~L~~L~Ls~n-~l~~~~~~~~-~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~  185 (680)
T 1ziw_A          115 -----NPFVKQKNLITLDLSHN-GLSSTKLGTQ-VQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKE  185 (680)
T ss_dssp             -----CTTTTCTTCCEEECCSS-CCSCCCCCSS-SCCTTCCEEECCSSCCCCBCHHHHGGGTTCEESEEECTTCCCCC
T ss_pred             -----hHccccCCCCEEECCCC-cccccCchhh-cccccCCEEEccCCcccccCHHHhhccccccccEEECCCCcccc
Confidence                 13455666777776665 3333333222 24566666666655            012456666666655443

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=99.91  E-value=1.5e-23  Score=199.70  Aligned_cols=301  Identities=16%  Similarity=0.152  Sum_probs=167.9

Q ss_pred             ccCCcEEEecCccccccccccCCcc-ccccCcccEEEeccCcCccccCchhHHhhhhccceEeeccccCcceEeccCCCC
Q 036454           18 ATQLRELHVFHLPKLTKLWNKDPQG-KLIFRNLVVVRIFDCQSLKNIFPTSIARSLLRLETLSIKDCGSVEEIVANDGRG   96 (410)
Q Consensus        18 ~~~L~~L~l~~~~~l~~~~~~~~~~-~~~l~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~   96 (410)
                      +++++.|++.++ .++.+    |.. +..+++|++|+++++ .+..+++..+ .++++|++|+++++. +..++.     
T Consensus        44 l~~l~~l~l~~~-~l~~l----~~~~~~~l~~L~~L~L~~n-~i~~~~~~~~-~~l~~L~~L~L~~n~-l~~~~~-----  110 (390)
T 3o6n_A           44 LNNQKIVTFKNS-TMRKL----PAALLDSFRQVELLNLNDL-QIEEIDTYAF-AYAHTIQKLYMGFNA-IRYLPP-----  110 (390)
T ss_dssp             GCCCSEEEEESC-EESEE----CTHHHHHCCCCSEEECTTS-CCCEECTTTT-TTCTTCCEEECCSSC-CCCCCT-----
T ss_pred             cCCceEEEecCC-chhhC----ChhHhcccccCcEEECCCC-cccccChhhc-cCCCCcCEEECCCCC-CCcCCH-----
Confidence            566777777665 33333    333 346677777777666 4455544333 466777777776665 554443     


Q ss_pred             CCCcccccCCCccEEeeccCCCccccccCcccCCCCCceEEEEccCCccccccEEEeeccCcccccccc---cccccEEE
Q 036454           97 NDAATKFIFPSLTFLRLRDLPDLTTFYSGMHILECPELRKLEVNHVDVFANLEELTLSKCIFTTWRQAQ---FHKLKILH  173 (410)
Q Consensus        97 ~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~l~~L~~L~i~~~~~~~~~~~~---l~~L~~L~  173 (410)
                         ..+..+++|++|+++++ .+..++...+. .+              ++|++|++++|.+....+..   +++|+.|+
T Consensus       111 ---~~~~~l~~L~~L~L~~n-~l~~l~~~~~~-~l--------------~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~  171 (390)
T 3o6n_A          111 ---HVFQNVPLLTVLVLERN-DLSSLPRGIFH-NT--------------PKLTTLSMSNNNLERIEDDTFQATTSLQNLQ  171 (390)
T ss_dssp             ---TTTTTCTTCCEEECCSS-CCCCCCTTTTT-TC--------------TTCCEEECCSSCCCBCCTTTTSSCTTCCEEE
T ss_pred             ---HHhcCCCCCCEEECCCC-ccCcCCHHHhc-CC--------------CCCcEEECCCCccCccChhhccCCCCCCEEE
Confidence               13455667777777766 44444443322 34              44555555555554444322   56666666


Q ss_pred             EEeCCCccchhhhhhhcccCceEEEeccccccccccchhhccccccCcccEEEeCCcccccccccCCCCccccccccceE
Q 036454          174 FISDGSDFFQVGLLQNIHNLEKLVLSTCEYKKIFSCEEVEEHAEGIAQIKSLKLKKLWLIEEHLWNPDSKLDSFLQNLEF  253 (410)
Q Consensus       174 l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~L~~  253 (410)
                      +....+...+   +..+++|+.|+++++.+..+..          .++|++|+++++...  .+      .....++|++
T Consensus       172 l~~n~l~~~~---~~~l~~L~~L~l~~n~l~~~~~----------~~~L~~L~l~~n~l~--~~------~~~~~~~L~~  230 (390)
T 3o6n_A          172 LSSNRLTHVD---LSLIPSLFHANVSYNLLSTLAI----------PIAVEELDASHNSIN--VV------RGPVNVELTI  230 (390)
T ss_dssp             CCSSCCSBCC---GGGCTTCSEEECCSSCCSEEEC----------CSSCSEEECCSSCCC--EE------ECCCCSSCCE
T ss_pred             CCCCcCCccc---cccccccceeecccccccccCC----------CCcceEEECCCCeee--ec------cccccccccE
Confidence            6554444443   3456677777777665544322          356777777663221  11      1123456777


Q ss_pred             EEEecccccccccccCccccCccCEEEEcccCCcccccchhhhhcCCCccEEEeccCcccchhccccCCCCccccccccc
Q 036454          254 LEVKKCALSLISLVPSSASFRNLTVLKVCNCWQLISLVTPQTAKTLVQLRELRVSECNRLEEIVANDGDADDEIVFSKLK  333 (410)
Q Consensus       254 L~l~~~~~~l~~l~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~L~  333 (410)
                      |++++|  .++.. +.+..+++|++|+++++ .+..... .....+++|++|+++++ .++.++.....      +++|+
T Consensus       231 L~l~~n--~l~~~-~~l~~l~~L~~L~Ls~n-~l~~~~~-~~~~~l~~L~~L~L~~n-~l~~~~~~~~~------l~~L~  298 (390)
T 3o6n_A          231 LKLQHN--NLTDT-AWLLNYPGLVEVDLSYN-ELEKIMY-HPFVKMQRLERLYISNN-RLVALNLYGQP------IPTLK  298 (390)
T ss_dssp             EECCSS--CCCCC-GGGGGCTTCSEEECCSS-CCCEEES-GGGTTCSSCCEEECCSS-CCCEEECSSSC------CTTCC
T ss_pred             EECCCC--CCccc-HHHcCCCCccEEECCCC-cCCCcCh-hHccccccCCEEECCCC-cCcccCcccCC------CCCCC
Confidence            777776  34433 34556677777777665 3444422 33456677777777764 44455544444      67777


Q ss_pred             eeecCcCcccceecCCCcccCCCCccEEEEecCCCCcccCCCCCCCCCcceeEecc
Q 036454          334 WLFLESSESITSFCSGNYAFSFPSLEDLIVENCPKLNTFSAGVLKTPRLQAVQNWE  389 (410)
Q Consensus       334 ~L~l~~c~~l~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~L~~l~~~~  389 (410)
                      .|+++++ .++.++..  ...+++|++|++.+|+ +..++  ...+++|++|++++
T Consensus       299 ~L~L~~n-~l~~~~~~--~~~l~~L~~L~L~~N~-i~~~~--~~~~~~L~~L~l~~  348 (390)
T 3o6n_A          299 VLDLSHN-HLLHVERN--QPQFDRLENLYLDHNS-IVTLK--LSTHHTLKNLTLSH  348 (390)
T ss_dssp             EEECCSS-CCCCCGGG--HHHHTTCSEEECCSSC-CCCCC--CCTTCCCSEEECCS
T ss_pred             EEECCCC-cceecCcc--ccccCcCCEEECCCCc-cceeC--chhhccCCEEEcCC
Confidence            7777775 35554432  2346777777776663 44454  33466777777763

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=99.91  E-value=4.2e-23  Score=193.31  Aligned_cols=294  Identities=16%  Similarity=0.152  Sum_probs=200.5

Q ss_pred             ccccccCccc-cccccccCCcEEEecCccccccccccCCccccccCcccEEEeccCcCccccCchhHHhhhhccceEeec
Q 036454            3 FDLQEVNSEE-THSGAATQLRELHVFHLPKLTKLWNKDPQGKLIFRNLVVVRIFDCQSLKNIFPTSIARSLLRLETLSIK   81 (410)
Q Consensus         3 ~~~~~~~~~~-~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~   81 (410)
                      +++.+..... ..++.+++|++|+++++ .++.+    +. +..+++|++|++++| .+..++.   +.++++|++|+++
T Consensus        49 L~l~~~~i~~~~~~~~~~~L~~L~l~~n-~i~~~----~~-~~~l~~L~~L~L~~n-~i~~~~~---~~~l~~L~~L~l~  118 (347)
T 4fmz_A           49 LVVAGEKVASIQGIEYLTNLEYLNLNGN-QITDI----SP-LSNLVKLTNLYIGTN-KITDISA---LQNLTNLRELYLN  118 (347)
T ss_dssp             EECCSSCCCCCTTGGGCTTCCEEECCSS-CCCCC----GG-GTTCTTCCEEECCSS-CCCCCGG---GTTCTTCSEEECT
T ss_pred             EEEeCCccccchhhhhcCCccEEEccCC-ccccc----hh-hhcCCcCCEEEccCC-cccCchH---HcCCCcCCEEECc
Confidence            3444443333 23788999999999998 44433    33 679999999999999 5665533   3799999999999


Q ss_pred             cccCcceEeccCCCCCCCcccccCCCccEEeeccCCCccccccCcccCCCCCceEEEEccCCccccccEEEeeccCcccc
Q 036454           82 DCGSVEEIVANDGRGNDAATKFIFPSLTFLRLRDLPDLTTFYSGMHILECPELRKLEVNHVDVFANLEELTLSKCIFTTW  161 (410)
Q Consensus        82 ~~~~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~l~~L~~L~i~~~~~~~~  161 (410)
                      ++. +..++          .+..+++|+.|+++++......+.  + ..+++|++|++.+|              .....
T Consensus       119 ~n~-i~~~~----------~~~~l~~L~~L~l~~n~~~~~~~~--~-~~l~~L~~L~l~~~--------------~~~~~  170 (347)
T 4fmz_A          119 EDN-ISDIS----------PLANLTKMYSLNLGANHNLSDLSP--L-SNMTGLNYLTVTES--------------KVKDV  170 (347)
T ss_dssp             TSC-CCCCG----------GGTTCTTCCEEECTTCTTCCCCGG--G-TTCTTCCEEECCSS--------------CCCCC
T ss_pred             CCc-ccCch----------hhccCCceeEEECCCCCCcccccc--h-hhCCCCcEEEecCC--------------CcCCc
Confidence            986 66654          466789999999999976655433  1 24555555555544              44333


Q ss_pred             cccc-cccccEEEEEeCCCccchhhhhhhcccCceEEEeccccccccccchhhccccccCcccEEEeCCcccccccccCC
Q 036454          162 RQAQ-FHKLKILHFISDGSDFFQVGLLQNIHNLEKLVLSTCEYKKIFSCEEVEEHAEGIAQIKSLKLKKLWLIEEHLWNP  240 (410)
Q Consensus       162 ~~~~-l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~  240 (410)
                      .+.. +++|+.|++........+.  +..+++|+.|+++++.+..+..       +..+++|++|+++++.-.  .    
T Consensus       171 ~~~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~-------~~~~~~L~~L~l~~n~l~--~----  235 (347)
T 4fmz_A          171 TPIANLTDLYSLSLNYNQIEDISP--LASLTSLHYFTAYVNQITDITP-------VANMTRLNSLKIGNNKIT--D----  235 (347)
T ss_dssp             GGGGGCTTCSEEECTTSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG-------GGGCTTCCEEECCSSCCC--C----
T ss_pred             hhhccCCCCCEEEccCCccccccc--ccCCCccceeecccCCCCCCch-------hhcCCcCCEEEccCCccC--C----
Confidence            3322 6677777775544544443  5677888888888877665543       556788888888875322  1    


Q ss_pred             CCccccccccceEEEEecccccccccccCccccCccCEEEEcccCCcccccchhhhhcCCCccEEEeccCcccchhcccc
Q 036454          241 DSKLDSFLQNLEFLEVKKCALSLISLVPSSASFRNLTVLKVCNCWQLISLVTPQTAKTLVQLRELRVSECNRLEEIVAND  320 (410)
Q Consensus       241 ~~~~~~~~~~L~~L~l~~~~~~l~~l~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~  320 (410)
                       ...+..+++|++|++++|  .++.+ +....+++|++|++++| .+..++   ....+++|++|++++|.-....+..+
T Consensus       236 -~~~~~~l~~L~~L~l~~n--~l~~~-~~~~~l~~L~~L~l~~n-~l~~~~---~~~~l~~L~~L~L~~n~l~~~~~~~l  307 (347)
T 4fmz_A          236 -LSPLANLSQLTWLEIGTN--QISDI-NAVKDLTKLKMLNVGSN-QISDIS---VLNNLSQLNSLFLNNNQLGNEDMEVI  307 (347)
T ss_dssp             -CGGGTTCTTCCEEECCSS--CCCCC-GGGTTCTTCCEEECCSS-CCCCCG---GGGGCTTCSEEECCSSCCCGGGHHHH
T ss_pred             -CcchhcCCCCCEEECCCC--ccCCC-hhHhcCCCcCEEEccCC-ccCCCh---hhcCCCCCCEEECcCCcCCCcChhHh
Confidence             122667788888888888  45554 34667788888888777 465553   35778888888888875444444555


Q ss_pred             CCCCccccccccceeecCcCcccceecCCCcccCCCCccEEEEecCC
Q 036454          321 GDADDEIVFSKLKWLFLESSESITSFCSGNYAFSFPSLEDLIVENCP  367 (410)
Q Consensus       321 ~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~l~~c~  367 (410)
                      +.      +++|+.|++++|+ ++....   ...+++|++|++++|+
T Consensus       308 ~~------l~~L~~L~L~~n~-l~~~~~---~~~l~~L~~L~l~~N~  344 (347)
T 4fmz_A          308 GG------LTNLTTLFLSQNH-ITDIRP---LASLSKMDSADFANQV  344 (347)
T ss_dssp             HT------CTTCSEEECCSSS-CCCCGG---GGGCTTCSEESSSCC-
T ss_pred             hc------cccCCEEEccCCc-cccccC---hhhhhccceeehhhhc
Confidence            55      8888888888875 555544   2358888888888774

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=99.91  E-value=3.3e-23  Score=216.06  Aligned_cols=58  Identities=21%  Similarity=0.282  Sum_probs=38.3

Q ss_pred             ccccceeecCcCcccceecCCCcccCCCCccEEEEecCCCCcccCCCCCCCCCcceeEeccc
Q 036454          329 FSKLKWLFLESSESITSFCSGNYAFSFPSLEDLIVENCPKLNTFSAGVLKTPRLQAVQNWEL  390 (410)
Q Consensus       329 ~~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~L~~l~~~~~  390 (410)
                      +++|+.|+++++ .++.++.. .+..+++|++|+++++ .++.+|.... .++|+.|++++|
T Consensus       479 l~~L~~L~Ls~N-~l~~~~~~-~~~~l~~L~~L~Ls~N-~l~~l~~~~~-~~~L~~L~Ls~N  536 (844)
T 3j0a_A          479 LSHLQVLYLNHN-YLNSLPPG-VFSHLTALRGLSLNSN-RLTVLSHNDL-PANLEILDISRN  536 (844)
T ss_dssp             BCCEECCCCCHH-HHTTCCTT-SSSSCCSCSEEEEESC-CCSSCCCCCC-CSCCCEEEEEEE
T ss_pred             cccccEEECCCC-cccccChh-HccchhhhheeECCCC-CCCccChhhh-hccccEEECCCC
Confidence            567777777764 45555543 2456888888888876 6666665554 377777777643

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=99.91  E-value=2e-22  Score=200.96  Aligned_cols=347  Identities=15%  Similarity=0.094  Sum_probs=208.0

Q ss_pred             cccccccCccccccccccCCcEEEecCccccccccccCCccccccCcccEEEeccCcCccccCchhHHhhhhccceEeec
Q 036454            2 IFDLQEVNSEETHSGAATQLRELHVFHLPKLTKLWNKDPQGKLIFRNLVVVRIFDCQSLKNIFPTSIARSLLRLETLSIK   81 (410)
Q Consensus         2 ~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~   81 (410)
                      +++++.....+.+....++|++|+++++. ++.+   .+..+..+++|++|++++| .+..+++..+ .++++|++|+++
T Consensus        35 ~l~ls~~~L~~ip~~~~~~L~~L~Ls~N~-i~~~---~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~-~~l~~L~~L~Ls  108 (562)
T 3a79_B           35 MVDYSNRNLTHVPKDLPPRTKALSLSQNS-ISEL---RMPDISFLSELRVLRLSHN-RIRSLDFHVF-LFNQDLEYLDVS  108 (562)
T ss_dssp             EEECTTSCCCSCCTTSCTTCCEEECCSSC-CCCC---CGGGTTTCTTCCEEECCSC-CCCEECTTTT-TTCTTCCEEECT
T ss_pred             EEEcCCCCCccCCCCCCCCcCEEECCCCC-cccc---ChhhhccCCCccEEECCCC-CCCcCCHHHh-CCCCCCCEEECC
Confidence            34555555555555556899999999884 4433   1356778999999999988 6666655544 688999999999


Q ss_pred             cccCcceEeccCCCCCCCcccccCCCccEEeeccCCCcccccc-CcccCCCCCceEEEEccC-------Cccccc--cEE
Q 036454           82 DCGSVEEIVANDGRGNDAATKFIFPSLTFLRLRDLPDLTTFYS-GMHILECPELRKLEVNHV-------DVFANL--EEL  151 (410)
Q Consensus        82 ~~~~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~-~~~~~~~~~L~~L~l~~~-------~~l~~L--~~L  151 (410)
                      ++. +..+|.         .  .+++|++|+++++ .+..++. ..+ ..+++|++|+++++       ..+++|  +.|
T Consensus       109 ~N~-l~~lp~---------~--~l~~L~~L~Ls~N-~l~~l~~p~~~-~~l~~L~~L~L~~n~l~~~~~~~l~~L~L~~L  174 (562)
T 3a79_B          109 HNR-LQNISC---------C--PMASLRHLDLSFN-DFDVLPVCKEF-GNLTKLTFLGLSAAKFRQLDLLPVAHLHLSCI  174 (562)
T ss_dssp             TSC-CCEECS---------C--CCTTCSEEECCSS-CCSBCCCCGGG-GGCTTCCEEEEECSBCCTTTTGGGTTSCEEEE
T ss_pred             CCc-CCccCc---------c--ccccCCEEECCCC-CccccCchHhh-cccCcccEEecCCCccccCchhhhhhceeeEE
Confidence            887 888875         3  6788888888887 4555442 222 36788888888877       233455  888


Q ss_pred             EeeccCc--ccccccc-----------------------------cccccEEEEEeCC----------------------
Q 036454          152 TLSKCIF--TTWRQAQ-----------------------------FHKLKILHFISDG----------------------  178 (410)
Q Consensus       152 ~i~~~~~--~~~~~~~-----------------------------l~~L~~L~l~~~~----------------------  178 (410)
                      ++++|.+  ....+..                             +++|+.|++....                      
T Consensus       175 ~L~~n~l~~~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~~~~~~l~~l~~L~~L  254 (562)
T 3a79_B          175 LLDLVSYHIKGGETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNV  254 (562)
T ss_dssp             EEEESSCCCCSSSCCEEEECCEEEEEEEECSSSCCCCCCEEEESSEEEEEEEEEECCSTTHHHHHHHHHHHHSCSSCEEE
T ss_pred             EeecccccccccCcccccccCcceEEEEecCccchhhhhhhcccccceEEEecccccccccchHHHHHHHHhccCcceEE
Confidence            8887766  2221111                             2334444442211                      


Q ss_pred             ------Cccchh-h--hhhhcccCceEEEeccccc-cccccc----------------------hh--------------
Q 036454          179 ------SDFFQV-G--LLQNIHNLEKLVLSTCEYK-KIFSCE----------------------EV--------------  212 (410)
Q Consensus       179 ------~~~~~~-~--~l~~l~~L~~L~l~~~~~~-~~~~~~----------------------~~--------------  212 (410)
                            ...... .  .....++|+.|++++|.+. .++...                      ..              
T Consensus       255 ~L~~~~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~~~p~~~~~~~~~~~~L~  334 (562)
T 3a79_B          255 TLQHIETTWKCSVKLFQFFWPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIK  334 (562)
T ss_dssp             EEEEEEECHHHHHHHHHHHTTSSEEEEEEEEEEECSCCCCCCCCCCSCSCCEEEEEEEEECCCSSCHHHHHHHHHTCCCS
T ss_pred             EecCCcCcHHHHHHHHHhhhcccccEEEEeccEeeccccchhhhcccccchheehhhcccceeecChhhhhhhhccCcce
Confidence                  000000 0  0011125555555555433 111100                      00              


Q ss_pred             ----------hcc-ccccCcccEEEeCCcccccccccCCCCccccccccceEEEEeccccccccc---ccCccccCccCE
Q 036454          213 ----------EEH-AEGIAQIKSLKLKKLWLIEEHLWNPDSKLDSFLQNLEFLEVKKCALSLISL---VPSSASFRNLTV  278 (410)
Q Consensus       213 ----------~~~-~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~l~~l---~~~~~~~~~L~~  278 (410)
                                +.. ...+++|++|+++++     .+....+..+..+++|++|++++|  .++.+   +..+..+++|++
T Consensus       335 ~L~l~~n~~~~~~~~~~l~~L~~L~l~~n-----~l~~~~~~~~~~l~~L~~L~L~~N--~l~~~~~~~~~~~~l~~L~~  407 (562)
T 3a79_B          335 MLSISDTPFIHMVCPPSPSSFTFLNFTQN-----VFTDSVFQGCSTLKRLQTLILQRN--GLKNFFKVALMTKNMSSLET  407 (562)
T ss_dssp             EEEEESSCCCCCCCCSSCCCCCEEECCSS-----CCCTTTTTTCCSCSSCCEEECCSS--CCCBTTHHHHTTTTCTTCCE
T ss_pred             EEEccCCCcccccCccCCCCceEEECCCC-----ccccchhhhhcccCCCCEEECCCC--CcCCcccchhhhcCCCCCCE
Confidence                      000 134566777777663     222222344566777777777777  34433   234556677777


Q ss_pred             EEEcccCCccc-ccchhhhhcCCCccEEEeccCcccchhccccCCCCccccc-cccceeecCcCcccceecCCCcccCCC
Q 036454          279 LKVCNCWQLIS-LVTPQTAKTLVQLRELRVSECNRLEEIVANDGDADDEIVF-SKLKWLFLESSESITSFCSGNYAFSFP  356 (410)
Q Consensus       279 L~l~~c~~l~~-~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~-~~L~~L~l~~c~~l~~~~~~~~~~~~~  356 (410)
                      |+++++. +.. ++. .....+++|++|++++|.-...++..         + ++|+.|+++++ .++.++...  ..++
T Consensus       408 L~l~~N~-l~~~~~~-~~~~~l~~L~~L~l~~n~l~~~~~~~---------l~~~L~~L~L~~N-~l~~ip~~~--~~l~  473 (562)
T 3a79_B          408 LDVSLNS-LNSHAYD-RTCAWAESILVLNLSSNMLTGSVFRC---------LPPKVKVLDLHNN-RIMSIPKDV--THLQ  473 (562)
T ss_dssp             EECTTSC-CBSCCSS-CCCCCCTTCCEEECCSSCCCGGGGSS---------CCTTCSEEECCSS-CCCCCCTTT--TSSC
T ss_pred             EECCCCc-CCCccCh-hhhcCcccCCEEECCCCCCCcchhhh---------hcCcCCEEECCCC-cCcccChhh--cCCC
Confidence            7776653 443 332 23355677777777776432333221         3 58889998886 677776653  2689


Q ss_pred             CccEEEEecCCCCcccCCC-CCCCCCcceeEeccc
Q 036454          357 SLEDLIVENCPKLNTFSAG-VLKTPRLQAVQNWEL  390 (410)
Q Consensus       357 ~L~~L~l~~c~~l~~~~~~-~~~~~~L~~l~~~~~  390 (410)
                      +|++|+++++ .++.+|.. +..+++|+++++++|
T Consensus       474 ~L~~L~L~~N-~l~~l~~~~~~~l~~L~~L~l~~N  507 (562)
T 3a79_B          474 ALQELNVASN-QLKSVPDGVFDRLTSLQYIWLHDN  507 (562)
T ss_dssp             CCSEEECCSS-CCCCCCTTSTTTCTTCCCEECCSC
T ss_pred             CCCEEECCCC-CCCCCCHHHHhcCCCCCEEEecCC
Confidence            9999999886 66778876 667899999999854

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=99.91  E-value=8.3e-23  Score=198.47  Aligned_cols=343  Identities=15%  Similarity=0.093  Sum_probs=234.8

Q ss_pred             ccCCcEEEecCccccccccccCCccccccCcccEEEeccCcCccccCchhHHhhhhccceEeeccccCcceEeccCCCCC
Q 036454           18 ATQLRELHVFHLPKLTKLWNKDPQGKLIFRNLVVVRIFDCQSLKNIFPTSIARSLLRLETLSIKDCGSVEEIVANDGRGN   97 (410)
Q Consensus        18 ~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~   97 (410)
                      .++|++|+++++. ++.+   .|..+..+++|++|++++|.....+++..+ .++++|++|+++++. +..++.      
T Consensus        29 ~~~l~~L~Ls~n~-i~~~---~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~-~~l~~L~~L~Ls~n~-l~~~~~------   96 (455)
T 3v47_A           29 PAHVNYVDLSLNS-IAEL---NETSFSRLQDLQFLKVEQQTPGLVIRNNTF-RGLSSLIILKLDYNQ-FLQLET------   96 (455)
T ss_dssp             CTTCCEEECCSSC-CCEE---CTTTTSSCTTCCEEECCCCSTTCEECTTTT-TTCTTCCEEECTTCT-TCEECT------
T ss_pred             CCccCEEEecCCc-cCcC---ChhHhccCccccEEECcCCcccceECcccc-cccccCCEEeCCCCc-cCccCh------
Confidence            3789999999984 4432   156678999999999999955445545443 689999999999987 666643      


Q ss_pred             CCcccccCCCccEEeeccCCCccc-cccCcccCCCCCceEEEEccC-----------CccccccEEEeeccCcccccccc
Q 036454           98 DAATKFIFPSLTFLRLRDLPDLTT-FYSGMHILECPELRKLEVNHV-----------DVFANLEELTLSKCIFTTWRQAQ  165 (410)
Q Consensus        98 ~~~~~~~l~~L~~L~l~~~~~l~~-~~~~~~~~~~~~L~~L~l~~~-----------~~l~~L~~L~i~~~~~~~~~~~~  165 (410)
                        ..+..+++|++|+++++ .+.. .+....-..+++|++|+++++           ..+++|++|++++|.+....+..
T Consensus        97 --~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~  173 (455)
T 3v47_A           97 --GAFNGLANLEVLTLTQC-NLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEED  173 (455)
T ss_dssp             --TTTTTCTTCCEEECTTS-CCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBSCCCTTT
T ss_pred             --hhccCcccCCEEeCCCC-CCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCcccccChhh
Confidence              16678899999999998 4443 222221236889999999888           24578899999998887665544


Q ss_pred             -----cccccEEEEEeCCCccchhhh--------hhhcccCceEEEeccccccccccchhhccccccCcccEEEeCCccc
Q 036454          166 -----FHKLKILHFISDGSDFFQVGL--------LQNIHNLEKLVLSTCEYKKIFSCEEVEEHAEGIAQIKSLKLKKLWL  232 (410)
Q Consensus       166 -----l~~L~~L~l~~~~~~~~~~~~--------l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~  232 (410)
                           ..+|+.|++........+...        +..+++|+.|++++|.+....+.  .-......++|+.|+++++..
T Consensus       174 l~~l~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~--~~~~~~~~~~L~~L~l~~~~~  251 (455)
T 3v47_A          174 LLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAK--RFFDAIAGTKIQSLILSNSYN  251 (455)
T ss_dssp             SGGGTTCEEEEEECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHH--HHHHHTTTCCEEEEECTTCTT
T ss_pred             hhccccccccccccccCcccccchhhccccccccccccceeeeEecCCCcccccchh--hhhccccccceeeEeeccccc
Confidence                 256778887444433333221        23557899999999876654331  000112237899999987644


Q ss_pred             ccccc------cCCCCcccc--ccccceEEEEecccccccccccCccccCccCEEEEcccCCcccccchhhhhcCCCccE
Q 036454          233 IEEHL------WNPDSKLDS--FLQNLEFLEVKKCALSLISLVPSSASFRNLTVLKVCNCWQLISLVTPQTAKTLVQLRE  304 (410)
Q Consensus       233 l~~~~------~~~~~~~~~--~~~~L~~L~l~~~~~~l~~l~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~  304 (410)
                      . ...      .......+.  ..++|++|++++|. .....+..+..+++|++|+++++ .+..++. ..+..+++|++
T Consensus       252 ~-~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~-~~~~~l~~L~~  327 (455)
T 3v47_A          252 M-GSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSK-IFALLKSVFSHFTDLEQLTLAQN-EINKIDD-NAFWGLTHLLK  327 (455)
T ss_dssp             T-SCCTTCCSSCCCCTTTTGGGTTSCCCEEECCSSC-CCEECTTTTTTCTTCCEEECTTS-CCCEECT-TTTTTCTTCCE
T ss_pred             c-ccccchhhhccCcccccccccccCceEEEecCcc-ccccchhhcccCCCCCEEECCCC-cccccCh-hHhcCcccCCE
Confidence            3 111      000001111  24789999999995 33334556788999999999887 4665532 34578899999


Q ss_pred             EEeccCcccchhccccCCCCccccccccceeecCcCcccceecCCCcccCCCCccEEEEecCCCCcccCCC-CCCCCCcc
Q 036454          305 LRVSECNRLEEIVANDGDADDEIVFSKLKWLFLESSESITSFCSGNYAFSFPSLEDLIVENCPKLNTFSAG-VLKTPRLQ  383 (410)
Q Consensus       305 L~l~~c~~l~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~-~~~~~~L~  383 (410)
                      |++++|.-....+..++.      +++|+.|+++++ .++.+... .+..+++|++|++++| .++.+|.. +..+++|+
T Consensus       328 L~Ls~N~l~~~~~~~~~~------l~~L~~L~Ls~N-~l~~~~~~-~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~  398 (455)
T 3v47_A          328 LNLSQNFLGSIDSRMFEN------LDKLEVLDLSYN-HIRALGDQ-SFLGLPNLKELALDTN-QLKSVPDGIFDRLTSLQ  398 (455)
T ss_dssp             EECCSSCCCEECGGGGTT------CTTCCEEECCSS-CCCEECTT-TTTTCTTCCEEECCSS-CCSCCCTTTTTTCTTCC
T ss_pred             EECCCCccCCcChhHhcC------cccCCEEECCCC-cccccChh-hccccccccEEECCCC-ccccCCHhHhccCCccc
Confidence            999987443333555666      899999999996 46666543 2456899999999886 56667654 45789999


Q ss_pred             eeEeccc
Q 036454          384 AVQNWEL  390 (410)
Q Consensus       384 ~l~~~~~  390 (410)
                      +|++++|
T Consensus       399 ~L~l~~N  405 (455)
T 3v47_A          399 KIWLHTN  405 (455)
T ss_dssp             EEECCSS
T ss_pred             EEEccCC
Confidence            9999843

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=99.91  E-value=9.2e-23  Score=203.78  Aligned_cols=221  Identities=14%  Similarity=0.109  Sum_probs=109.3

Q ss_pred             cccccEEEeeccCcccccccc--cccccEEEEEeCCCccchhhhhhhcccCceEEEeccccccccccchhhccccccCcc
Q 036454          145 FANLEELTLSKCIFTTWRQAQ--FHKLKILHFISDGSDFFQVGLLQNIHNLEKLVLSTCEYKKIFSCEEVEEHAEGIAQI  222 (410)
Q Consensus       145 l~~L~~L~i~~~~~~~~~~~~--l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~L  222 (410)
                      +++|+.|++++|....++...  + +|+.|++.......++.   ..+++|+.|.++++.......       ...+++|
T Consensus       281 l~~L~~L~l~~~~l~~l~~~~~~~-~L~~L~l~~n~~~~l~~---~~l~~L~~L~l~~n~~~~~~~-------~~~~~~L  349 (570)
T 2z63_A          281 LTNVSSFSLVSVTIERVKDFSYNF-GWQHLELVNCKFGQFPT---LKLKSLKRLTFTSNKGGNAFS-------EVDLPSL  349 (570)
T ss_dssp             GTTCSEEEEESCEECSCCBCCSCC-CCSEEEEESCBCSSCCB---CBCSSCCEEEEESCBSCCBCC-------CCBCTTC
T ss_pred             cCcccEEEecCccchhhhhhhccC-CccEEeeccCcccccCc---ccccccCEEeCcCCccccccc-------cccCCCC
Confidence            345566666655554433322  4 56666664444444442   345666666666655443333       2445666


Q ss_pred             cEEEeCCcccccccccCCCCccccccccceEEEEecccccccccccCccccCccCEEEEcccCCcccccchhhhhcCCCc
Q 036454          223 KSLKLKKLWLIEEHLWNPDSKLDSFLQNLEFLEVKKCALSLISLVPSSASFRNLTVLKVCNCWQLISLVTPQTAKTLVQL  302 (410)
Q Consensus       223 ~~L~l~~c~~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~l~~l~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L  302 (410)
                      ++|+++++... ...  .....+..+++|++|++++|  .+..+++.+..+++|++|+++++. +...........+++|
T Consensus       350 ~~L~l~~n~l~-~~~--~~~~~~~~~~~L~~L~l~~n--~l~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~~l~~L  423 (570)
T 2z63_A          350 EFLDLSRNGLS-FKG--CCSQSDFGTTSLKYLDLSFN--GVITMSSNFLGLEQLEHLDFQHSN-LKQMSEFSVFLSLRNL  423 (570)
T ss_dssp             CEEECCSSCCB-EEE--EEEHHHHTCSCCCEEECCSC--SEEEEEEEEETCTTCCEEECTTSE-EESCTTSCTTTTCTTC
T ss_pred             CEEeCcCCccC-ccc--cccccccccCccCEEECCCC--ccccccccccccCCCCEEEccCCc-cccccchhhhhcCCCC
Confidence            66666653211 000  00122345566666666666  344444445556666666665542 3333221233555666


Q ss_pred             cEEEeccCcccchhccccCCCCccccccccceeecCcCcccc-eecCCCcccCCCCccEEEEecCCCCcccCCCCCCCCC
Q 036454          303 RELRVSECNRLEEIVANDGDADDEIVFSKLKWLFLESSESIT-SFCSGNYAFSFPSLEDLIVENCPKLNTFSAGVLKTPR  381 (410)
Q Consensus       303 ~~L~l~~c~~l~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~-~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~  381 (410)
                      ++|++++|.-....+..+..      +++|+.|++++|.-.. .++.  .+..+++|++|++++|.--...|..+..+++
T Consensus       424 ~~L~l~~n~l~~~~~~~~~~------l~~L~~L~l~~n~l~~~~~p~--~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~  495 (570)
T 2z63_A          424 IYLDISHTHTRVAFNGIFNG------LSSLEVLKMAGNSFQENFLPD--IFTELRNLTFLDLSQCQLEQLSPTAFNSLSS  495 (570)
T ss_dssp             CEEECTTSCCEECCTTTTTT------CTTCCEEECTTCEEGGGEECS--CCTTCTTCCEEECTTSCCCEECTTTTTTCTT
T ss_pred             CEEeCcCCcccccchhhhhc------CCcCcEEECcCCcCccccchh--hhhcccCCCEEECCCCccccCChhhhhcccC
Confidence            66666665433334444444      6666666666654221 2221  2234666666666665333223455555666


Q ss_pred             cceeEeccc
Q 036454          382 LQAVQNWEL  390 (410)
Q Consensus       382 L~~l~~~~~  390 (410)
                      |++|+++++
T Consensus       496 L~~L~l~~n  504 (570)
T 2z63_A          496 LQVLNMASN  504 (570)
T ss_dssp             CCEEECCSS
T ss_pred             CCEEeCCCC
Confidence            666666543

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=99.91  E-value=8e-23  Score=202.00  Aligned_cols=137  Identities=13%  Similarity=0.050  Sum_probs=93.0

Q ss_pred             cccccccCccccccccccCCcEEEecCccccccccccCCccccccCcccEEEeccCcCccccCchhHHhhhhccceEeec
Q 036454            2 IFDLQEVNSEETHSGAATQLRELHVFHLPKLTKLWNKDPQGKLIFRNLVVVRIFDCQSLKNIFPTSIARSLLRLETLSIK   81 (410)
Q Consensus         2 ~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~   81 (410)
                      ++|+++....+.+....++|++|+++++. ++.+   .|..+..+++|++|++++| .+..+.+..+ +++++|++|+++
T Consensus         4 ~l~ls~n~l~~ip~~~~~~L~~L~Ls~n~-i~~~---~~~~~~~l~~L~~L~Ls~n-~l~~~~~~~~-~~l~~L~~L~Ls   77 (520)
T 2z7x_B            4 LVDRSKNGLIHVPKDLSQKTTILNISQNY-ISEL---WTSDILSLSKLRILIISHN-RIQYLDISVF-KFNQELEYLDLS   77 (520)
T ss_dssp             EEECTTSCCSSCCCSCCTTCSEEECCSSC-CCCC---CHHHHTTCTTCCEEECCSS-CCCEEEGGGG-TTCTTCCEEECC
T ss_pred             eEecCCCCcccccccccccccEEECCCCc-cccc---ChhhccccccccEEecCCC-ccCCcChHHh-hcccCCCEEecC
Confidence            35666665555554445899999999884 3322   1345678899999999988 5666655444 688999999999


Q ss_pred             cccCcceEeccCCCCCCCcccccCCCccEEeeccCCCcccccc-CcccCCCCCceEEEEccC-------Cccccc--cEE
Q 036454           82 DCGSVEEIVANDGRGNDAATKFIFPSLTFLRLRDLPDLTTFYS-GMHILECPELRKLEVNHV-------DVFANL--EEL  151 (410)
Q Consensus        82 ~~~~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~-~~~~~~~~~L~~L~l~~~-------~~l~~L--~~L  151 (410)
                      ++. ++.+|.         .  .+++|++|+++++ .+..++. ..+ ..+++|++|+++++       ..+++|  +.|
T Consensus        78 ~N~-l~~lp~---------~--~l~~L~~L~L~~N-~l~~~~~p~~~-~~l~~L~~L~L~~n~l~~~~~~~l~~L~L~~L  143 (520)
T 2z7x_B           78 HNK-LVKISC---------H--PTVNLKHLDLSFN-AFDALPICKEF-GNMSQLKFLGLSTTHLEKSSVLPIAHLNISKV  143 (520)
T ss_dssp             SSC-CCEEEC---------C--CCCCCSEEECCSS-CCSSCCCCGGG-GGCTTCCEEEEEESSCCGGGGGGGTTSCEEEE
T ss_pred             CCc-eeecCc---------c--ccCCccEEeccCC-ccccccchhhh-ccCCcceEEEecCcccchhhccccccceeeEE
Confidence            886 888875         3  5778888888877 4443221 222 35778888888776       334555  777


Q ss_pred             EeeccCc
Q 036454          152 TLSKCIF  158 (410)
Q Consensus       152 ~i~~~~~  158 (410)
                      ++++|.+
T Consensus       144 ~l~~n~l  150 (520)
T 2z7x_B          144 LLVLGET  150 (520)
T ss_dssp             EEEECTT
T ss_pred             Eeecccc
Confidence            7777665

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=99.91  E-value=1.4e-22  Score=198.09  Aligned_cols=298  Identities=16%  Similarity=0.167  Sum_probs=152.9

Q ss_pred             cccCCcEEEecCccccccccccCCccccccCcccEEEeccCcCccccCchhHHhhhhccceEeeccccCcceEeccCCCC
Q 036454           17 AATQLRELHVFHLPKLTKLWNKDPQGKLIFRNLVVVRIFDCQSLKNIFPTSIARSLLRLETLSIKDCGSVEEIVANDGRG   96 (410)
Q Consensus        17 ~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~   96 (410)
                      ..++++.|+++++ .++.+.   +..+..+++|++|++++| .+..+.+..+ .++++|++|+++++. +..++.     
T Consensus        30 ~~~~l~~L~L~~n-~l~~~~---~~~~~~l~~L~~L~L~~n-~i~~~~~~~~-~~l~~L~~L~L~~n~-l~~~~~-----   97 (477)
T 2id5_A           30 IPTETRLLDLGKN-RIKTLN---QDEFASFPHLEELELNEN-IVSAVEPGAF-NNLFNLRTLGLRSNR-LKLIPL-----   97 (477)
T ss_dssp             CCTTCSEEECCSS-CCCEEC---TTTTTTCTTCCEEECTTS-CCCEECTTTT-TTCTTCCEEECCSSC-CCSCCT-----
T ss_pred             CCCCCcEEECCCC-ccceEC---HhHccCCCCCCEEECCCC-ccCEeChhhh-hCCccCCEEECCCCc-CCccCc-----
Confidence            3456666666665 233221   334456666666666666 4444434333 456666666666654 554443     


Q ss_pred             CCCcccccCCCccEEeeccCCCccccccCcccCCCCCceEEEEccCCccccccEEEeeccCcccccccc---cccccEEE
Q 036454           97 NDAATKFIFPSLTFLRLRDLPDLTTFYSGMHILECPELRKLEVNHVDVFANLEELTLSKCIFTTWRQAQ---FHKLKILH  173 (410)
Q Consensus        97 ~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~l~~L~~L~i~~~~~~~~~~~~---l~~L~~L~  173 (410)
                         ..+..+++|+.|+++++ .+.......+. .+              ++|++|++++|.+....+..   +++|+.|+
T Consensus        98 ---~~~~~l~~L~~L~Ls~n-~i~~~~~~~~~-~l--------------~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~  158 (477)
T 2id5_A           98 ---GVFTGLSNLTKLDISEN-KIVILLDYMFQ-DL--------------YNLKSLEVGDNDLVYISHRAFSGLNSLEQLT  158 (477)
T ss_dssp             ---TSSTTCTTCCEEECTTS-CCCEECTTTTT-TC--------------TTCCEEEECCTTCCEECTTSSTTCTTCCEEE
T ss_pred             ---ccccCCCCCCEEECCCC-ccccCChhHcc-cc--------------ccCCEEECCCCccceeChhhccCCCCCCEEE
Confidence               12345566666666665 33333222221 23              44455555555444433322   55666666


Q ss_pred             EEeCCCccchhhhhhhcccCceEEEeccccccccccchhhccccccCcccEEEeCCcccccccccCCCCccccccccceE
Q 036454          174 FISDGSDFFQVGLLQNIHNLEKLVLSTCEYKKIFSCEEVEEHAEGIAQIKSLKLKKLWLIEEHLWNPDSKLDSFLQNLEF  253 (410)
Q Consensus       174 l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~L~~  253 (410)
                      +....+...+...+.++++|+.|+++++.+..+..     ..+..+++|+.|+++++..+ ..+.    .......+|++
T Consensus       159 l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~~-----~~~~~l~~L~~L~l~~~~~~-~~~~----~~~~~~~~L~~  228 (477)
T 2id5_A          159 LEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIRD-----YSFKRLYRLKVLEISHWPYL-DTMT----PNCLYGLNLTS  228 (477)
T ss_dssp             EESCCCSSCCHHHHTTCTTCCEEEEESCCCCEECT-----TCSCSCTTCCEEEEECCTTC-CEEC----TTTTTTCCCSE
T ss_pred             CCCCcCcccChhHhcccCCCcEEeCCCCcCcEeCh-----hhcccCcccceeeCCCCccc-cccC----cccccCccccE
Confidence            65555555555556666666666666666554432     12445566666666665544 3331    11122336666


Q ss_pred             EEEeccccccccccc-CccccCccCEEEEcccCCcccccchhhhhcCCCccEEEeccCcccchhccccCCCCcccccccc
Q 036454          254 LEVKKCALSLISLVP-SSASFRNLTVLKVCNCWQLISLVTPQTAKTLVQLRELRVSECNRLEEIVANDGDADDEIVFSKL  332 (410)
Q Consensus       254 L~l~~~~~~l~~l~~-~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~L  332 (410)
                      |++++|  .++.++. .+..+++|++|+++++. +..++. .....+++|++|+++++.-....+..+..      +++|
T Consensus       229 L~l~~n--~l~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~-~~~~~l~~L~~L~L~~n~l~~~~~~~~~~------l~~L  298 (477)
T 2id5_A          229 LSITHC--NLTAVPYLAVRHLVYLRFLNLSYNP-ISTIEG-SMLHELLRLQEIQLVGGQLAVVEPYAFRG------LNYL  298 (477)
T ss_dssp             EEEESS--CCCSCCHHHHTTCTTCCEEECCSSC-CCEECT-TSCTTCTTCCEEECCSSCCSEECTTTBTT------CTTC
T ss_pred             EECcCC--cccccCHHHhcCccccCeeECCCCc-CCccCh-hhccccccCCEEECCCCccceECHHHhcC------cccC
Confidence            666666  3444442 23455666666665552 444432 23355566666666664332222334444      5666


Q ss_pred             ceeecCcCcccceecCCCcccCCCCccEEEEecCC
Q 036454          333 KWLFLESSESITSFCSGNYAFSFPSLEDLIVENCP  367 (410)
Q Consensus       333 ~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~l~~c~  367 (410)
                      +.|+++++ .++.++.. .+..+++|++|++.+++
T Consensus       299 ~~L~L~~N-~l~~~~~~-~~~~l~~L~~L~l~~N~  331 (477)
T 2id5_A          299 RVLNVSGN-QLTTLEES-VFHSVGNLETLILDSNP  331 (477)
T ss_dssp             CEEECCSS-CCSCCCGG-GBSCGGGCCEEECCSSC
T ss_pred             CEEECCCC-cCceeCHh-HcCCCcccCEEEccCCC
Confidence            66666664 35544433 23345666666665543

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=99.90  E-value=2.9e-22  Score=204.48  Aligned_cols=301  Identities=18%  Similarity=0.181  Sum_probs=188.9

Q ss_pred             ccccCccccccccccCCcEEEecCccccccccccCCccccccCcccEEEeccCcCccccCchhHHhhhhccceEeecccc
Q 036454            5 LQEVNSEETHSGAATQLRELHVFHLPKLTKLWNKDPQGKLIFRNLVVVRIFDCQSLKNIFPTSIARSLLRLETLSIKDCG   84 (410)
Q Consensus         5 ~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~   84 (410)
                      .+.....+.+....+++++|+++++. ++.+.   +..+..+++|++|+++++ .+..+.+..+ +++++|++|+++++.
T Consensus        11 cs~~~L~~ip~~~~~~l~~L~Ls~n~-l~~~~---~~~~~~l~~L~~L~Ls~n-~l~~~~~~~~-~~l~~L~~L~L~~n~   84 (680)
T 1ziw_A           11 CSHLKLTQVPDDLPTNITVLNLTHNQ-LRRLP---AANFTRYSQLTSLDVGFN-TISKLEPELC-QKLPMLKVLNLQHNE   84 (680)
T ss_dssp             CCSSCCSSCCSCSCTTCSEEECCSSC-CCCCC---GGGGGGGTTCSEEECCSS-CCCCCCTTHH-HHCTTCCEEECCSSC
T ss_pred             CCCCCccccccccCCCCcEEECCCCC-CCCcC---HHHHhCCCcCcEEECCCC-ccCccCHHHH-hcccCcCEEECCCCc
Confidence            33333334443334799999999984 44331   345789999999999998 5666656544 799999999999986


Q ss_pred             CcceEeccCCCCCCCcccccCCCccEEeeccCCCccccccCcccCCCCCceEEEEccC----------CccccccEEEee
Q 036454           85 SVEEIVANDGRGNDAATKFIFPSLTFLRLRDLPDLTTFYSGMHILECPELRKLEVNHV----------DVFANLEELTLS  154 (410)
Q Consensus        85 ~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~~----------~~l~~L~~L~i~  154 (410)
                       +..++.        ..+..+++|++|+++++ .+..++...+. .+++|++|+++++          ..+++|++|+++
T Consensus        85 -l~~l~~--------~~~~~l~~L~~L~L~~n-~l~~~~~~~~~-~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~  153 (680)
T 1ziw_A           85 -LSQLSD--------KTFAFCTNLTELHLMSN-SIQKIKNNPFV-KQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLS  153 (680)
T ss_dssp             -CCCCCT--------TTTTTCTTCSEEECCSS-CCCCCCSCTTT-TCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECC
T ss_pred             -cCccCh--------hhhccCCCCCEEECCCC-ccCccChhHcc-ccCCCCEEECCCCcccccCchhhcccccCCEEEcc
Confidence             777764        24678899999999998 56666655443 7899999999988          357799999999


Q ss_pred             ccCcccccccc-----cccccEEEEEeCCCccchhhhhhhcc---------------------------cCceEEEeccc
Q 036454          155 KCIFTTWRQAQ-----FHKLKILHFISDGSDFFQVGLLQNIH---------------------------NLEKLVLSTCE  202 (410)
Q Consensus       155 ~~~~~~~~~~~-----l~~L~~L~l~~~~~~~~~~~~l~~l~---------------------------~L~~L~l~~~~  202 (410)
                      +|.+....+..     +++|+.|++........+...+..++                           +|+.|+++++.
T Consensus       154 ~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~  233 (680)
T 1ziw_A          154 NNKIQALKSEELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQ  233 (680)
T ss_dssp             SSCCCCBCHHHHGGGTTCEESEEECTTCCCCCBCTTGGGGSSEECEEECTTCCCHHHHHHHHHHHHTTSCCCEEECTTSC
T ss_pred             CCcccccCHHHhhccccccccEEECCCCcccccChhhhhhhhhhhhhhccccccChhhHHHHHHHhhhccccEEEccCCc
Confidence            99887665532     47899999955555555444444444                           44555555554


Q ss_pred             cccccccchhhcccccc--CcccEEEeCCcccccccccCCCCccccccccceEEEEecccccccc-cccCccccCccCEE
Q 036454          203 YKKIFSCEEVEEHAEGI--AQIKSLKLKKLWLIEEHLWNPDSKLDSFLQNLEFLEVKKCALSLIS-LVPSSASFRNLTVL  279 (410)
Q Consensus       203 ~~~~~~~~~~~~~~~~l--~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~l~~-l~~~~~~~~~L~~L  279 (410)
                      +....+     ..+.++  ++|+.|+++++...  .+   ....+..+++|++|++++|.  +.. .+..+..+++|++|
T Consensus       234 l~~~~~-----~~~~~l~~~~L~~L~Ls~n~l~--~~---~~~~~~~l~~L~~L~L~~n~--l~~~~~~~~~~l~~L~~L  301 (680)
T 1ziw_A          234 LSTTSN-----TTFLGLKWTNLTMLDLSYNNLN--VV---GNDSFAWLPQLEYFFLEYNN--IQHLFSHSLHGLFNVRYL  301 (680)
T ss_dssp             CCEECT-----TTTGGGGGSCCCEEECTTSCCC--EE---CTTTTTTCTTCCEEECCSCC--BSEECTTTTTTCTTCCEE
T ss_pred             ccccCh-----hHhhccCcCCCCEEECCCCCcC--cc---CcccccCcccccEeeCCCCc--cCccChhhhcCCCCccEE
Confidence            443322     122333  34788888774322  11   22345667788888888774  333 33445667777777


Q ss_pred             EEcccCCcc-----cccc--hhhhhcCCCccEEEeccCcccchhccccCCCCccccccccceeecCcC
Q 036454          280 KVCNCWQLI-----SLVT--PQTAKTLVQLRELRVSECNRLEEIVANDGDADDEIVFSKLKWLFLESS  340 (410)
Q Consensus       280 ~l~~c~~l~-----~~~~--~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~L~~L~l~~c  340 (410)
                      +++++..-.     .++.  ......+++|++|+++++.-....+..+..      +++|+.|+++++
T Consensus       302 ~L~~~~~~~~~~~~~lp~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~------l~~L~~L~Ls~n  363 (680)
T 1ziw_A          302 NLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTG------LINLKYLSLSNS  363 (680)
T ss_dssp             ECTTCBCCC------CCEECTTTTTTCTTCCEEECCSCCBCCCCTTTTTT------CTTCCEEECTTC
T ss_pred             eccchhhhcccccccccccChhhcccCCCCCEEECCCCccCCCChhHhcc------ccCCcEEECCCC
Confidence            776542110     1110  012345666777777665322222222333      555666665553

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=99.90  E-value=3.6e-22  Score=208.19  Aligned_cols=113  Identities=15%  Similarity=0.161  Sum_probs=56.9

Q ss_pred             cccccCCcEEEecCccccccccccCCccccccCcccEEEeccCcCccccCchhHHhhhhccceEeeccccCcce-EeccC
Q 036454           15 SGAATQLRELHVFHLPKLTKLWNKDPQGKLIFRNLVVVRIFDCQSLKNIFPTSIARSLLRLETLSIKDCGSVEE-IVAND   93 (410)
Q Consensus        15 ~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~-~~~~~   93 (410)
                      ++.+++|++|+++++.....+.   |..+..+++|++|++++| .+..+.|..+ +++++|++|++++|. +.. ++.. 
T Consensus        44 ~~~l~~L~~LdLs~n~~~~~i~---~~~f~~L~~L~~L~Ls~N-~l~~~~p~~~-~~l~~L~~L~Ls~n~-l~~~~~~~-  116 (844)
T 3j0a_A           44 FPFLEQLQLLELGSQYTPLTID---KEAFRNLPNLRILDLGSS-KIYFLHPDAF-QGLFHLFELRLYFCG-LSDAVLKD-  116 (844)
T ss_dssp             CSSCCSCSEEEECTTCCCCEEC---TTTTSSCTTCCEEECTTC-CCCEECTTSS-CSCSSCCCEECTTCC-CSSCCSTT-
T ss_pred             CcccccCeEEeCCCCCCccccC---HHHhcCCCCCCEEECCCC-cCcccCHhHc-cCCcccCEeeCcCCC-CCcccccC-
Confidence            4555555555555553222211   333445556666666555 3333333332 455556666665554 332 2210 


Q ss_pred             CCCCCCcccccCCCccEEeeccCCCcccccc-CcccCCCCCceEEEEccC
Q 036454           94 GRGNDAATKFIFPSLTFLRLRDLPDLTTFYS-GMHILECPELRKLEVNHV  142 (410)
Q Consensus        94 ~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~-~~~~~~~~~L~~L~l~~~  142 (410)
                            ..+..+++|++|+++++ .+..... ..+ ..+++|++|+++++
T Consensus       117 ------~~~~~L~~L~~L~Ls~N-~l~~~~~~~~~-~~L~~L~~L~Ls~N  158 (844)
T 3j0a_A          117 ------GYFRNLKALTRLDLSKN-QIRSLYLHPSF-GKLNSLKSIDFSSN  158 (844)
T ss_dssp             ------CCCSSCSSCCEEEEESC-CCCCCCCCGGG-GTCSSCCEEEEESS
T ss_pred             ------ccccccCCCCEEECCCC-cccccccchhH-hhCCCCCEEECCCC
Confidence                  12556677777777776 3333322 122 35677777777666

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=99.90  E-value=4.4e-22  Score=194.59  Aligned_cols=312  Identities=19%  Similarity=0.194  Sum_probs=230.4

Q ss_pred             cEEEecCccccccccccCCccccccCcccEEEeccCcCccccCchhHHhhhhccceEeeccccCcceEeccCCCCCCCcc
Q 036454           22 RELHVFHLPKLTKLWNKDPQGKLIFRNLVVVRIFDCQSLKNIFPTSIARSLLRLETLSIKDCGSVEEIVANDGRGNDAAT  101 (410)
Q Consensus        22 ~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~  101 (410)
                      +.++..+. .++.+    |.++  .+++++|+++++ .+..+++..+ .++++|++|+++++. +..+..        ..
T Consensus        14 ~~v~c~~~-~l~~i----p~~~--~~~l~~L~L~~n-~l~~~~~~~~-~~l~~L~~L~L~~n~-i~~~~~--------~~   75 (477)
T 2id5_A           14 RAVLCHRK-RFVAV----PEGI--PTETRLLDLGKN-RIKTLNQDEF-ASFPHLEELELNENI-VSAVEP--------GA   75 (477)
T ss_dssp             TEEECCSC-CCSSC----CSCC--CTTCSEEECCSS-CCCEECTTTT-TTCTTCCEEECTTSC-CCEECT--------TT
T ss_pred             CEEEeCCC-CcCcC----CCCC--CCCCcEEECCCC-ccceECHhHc-cCCCCCCEEECCCCc-cCEeCh--------hh
Confidence            45555553 34444    5543  468999999988 6666655544 689999999999886 777643        15


Q ss_pred             cccCCCccEEeeccCCCccccccCcccCCCCCceEEEEccCCccccccEEEeeccCcccccccc---cccccEEEEEeCC
Q 036454          102 KFIFPSLTFLRLRDLPDLTTFYSGMHILECPELRKLEVNHVDVFANLEELTLSKCIFTTWRQAQ---FHKLKILHFISDG  178 (410)
Q Consensus       102 ~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~l~~L~~L~i~~~~~~~~~~~~---l~~L~~L~l~~~~  178 (410)
                      +..+++|++|+++++ .+..++...+. .+              ++|++|++++|.+....+..   +++|+.|++..+.
T Consensus        76 ~~~l~~L~~L~L~~n-~l~~~~~~~~~-~l--------------~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~  139 (477)
T 2id5_A           76 FNNLFNLRTLGLRSN-RLKLIPLGVFT-GL--------------SNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDND  139 (477)
T ss_dssp             TTTCTTCCEEECCSS-CCCSCCTTSST-TC--------------TTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTT
T ss_pred             hhCCccCCEEECCCC-cCCccCccccc-CC--------------CCCCEEECCCCccccCChhHccccccCCEEECCCCc
Confidence            677899999999987 56666554332 33              55666666666665554433   8899999997777


Q ss_pred             CccchhhhhhhcccCceEEEeccccccccccchhhccccccCcccEEEeCCcccccccccCCCCccccccccceEEEEec
Q 036454          179 SDFFQVGLLQNIHNLEKLVLSTCEYKKIFSCEEVEEHAEGIAQIKSLKLKKLWLIEEHLWNPDSKLDSFLQNLEFLEVKK  258 (410)
Q Consensus       179 ~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~L~~L~l~~  258 (410)
                      +.......+.++++|+.|++++|.+..+..     ..+..+++|+.|+++++...  .+   ....+..+++|++|++++
T Consensus       140 l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~-----~~l~~l~~L~~L~l~~n~i~--~~---~~~~~~~l~~L~~L~l~~  209 (477)
T 2id5_A          140 LVYISHRAFSGLNSLEQLTLEKCNLTSIPT-----EALSHLHGLIVLRLRHLNIN--AI---RDYSFKRLYRLKVLEISH  209 (477)
T ss_dssp             CCEECTTSSTTCTTCCEEEEESCCCSSCCH-----HHHTTCTTCCEEEEESCCCC--EE---CTTCSCSCTTCCEEEEEC
T ss_pred             cceeChhhccCCCCCCEEECCCCcCcccCh-----hHhcccCCCcEEeCCCCcCc--Ee---ChhhcccCcccceeeCCC
Confidence            777776778899999999999998776643     23567899999999985332  22   234567889999999999


Q ss_pred             ccccccccccCccccCccCEEEEcccCCcccccchhhhhcCCCccEEEeccCcccchhc-cccCCCCccccccccceeec
Q 036454          259 CALSLISLVPSSASFRNLTVLKVCNCWQLISLVTPQTAKTLVQLRELRVSECNRLEEIV-ANDGDADDEIVFSKLKWLFL  337 (410)
Q Consensus       259 ~~~~l~~l~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~-~~~~~~~~~~~~~~L~~L~l  337 (410)
                      |. .+..++.......+|++|+++++ +++.++. .....+++|++|+++++. ++.++ ..+..      +++|+.|++
T Consensus       210 ~~-~~~~~~~~~~~~~~L~~L~l~~n-~l~~~~~-~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~------l~~L~~L~L  279 (477)
T 2id5_A          210 WP-YLDTMTPNCLYGLNLTSLSITHC-NLTAVPY-LAVRHLVYLRFLNLSYNP-ISTIEGSMLHE------LLRLQEIQL  279 (477)
T ss_dssp             CT-TCCEECTTTTTTCCCSEEEEESS-CCCSCCH-HHHTTCTTCCEEECCSSC-CCEECTTSCTT------CTTCCEEEC
T ss_pred             Cc-cccccCcccccCccccEEECcCC-cccccCH-HHhcCccccCeeECCCCc-CCccChhhccc------cccCCEEEC
Confidence            98 78878777777779999999887 5776653 456889999999999874 44443 34555      899999999


Q ss_pred             CcCcccceecCCCcccCCCCccEEEEecCCCCcccCCC-CCCCCCcceeEeccc
Q 036454          338 ESSESITSFCSGNYAFSFPSLEDLIVENCPKLNTFSAG-VLKTPRLQAVQNWEL  390 (410)
Q Consensus       338 ~~c~~l~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~-~~~~~~L~~l~~~~~  390 (410)
                      +++ .++.+... .+..+++|++|++++| .++.++.. +..+++|++|++++|
T Consensus       280 ~~n-~l~~~~~~-~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~l~~N  330 (477)
T 2id5_A          280 VGG-QLAVVEPY-AFRGLNYLRVLNVSGN-QLTTLEESVFHSVGNLETLILDSN  330 (477)
T ss_dssp             CSS-CCSEECTT-TBTTCTTCCEEECCSS-CCSCCCGGGBSCGGGCCEEECCSS
T ss_pred             CCC-ccceECHH-HhcCcccCCEEECCCC-cCceeCHhHcCCCcccCEEEccCC
Confidence            995 57776554 3457999999999987 66667654 457899999999854

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=99.90  E-value=1.1e-22  Score=193.56  Aligned_cols=286  Identities=15%  Similarity=0.133  Sum_probs=193.7

Q ss_pred             cccccCCcEEEecCccccccccccCCccccccCcccEEEeccCcCccccCchhHHhhhhccceEeeccccCcceEeccCC
Q 036454           15 SGAATQLRELHVFHLPKLTKLWNKDPQGKLIFRNLVVVRIFDCQSLKNIFPTSIARSLLRLETLSIKDCGSVEEIVANDG   94 (410)
Q Consensus        15 ~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~   94 (410)
                      +..+++|++|+++++. ++.+.   +..+..+++|++|++++| .+..+++..+ +++++|++|+++++. +..++.   
T Consensus        65 ~~~l~~L~~L~L~~n~-i~~~~---~~~~~~l~~L~~L~L~~n-~l~~~~~~~~-~~l~~L~~L~L~~n~-l~~l~~---  134 (390)
T 3o6n_A           65 LDSFRQVELLNLNDLQ-IEEID---TYAFAYAHTIQKLYMGFN-AIRYLPPHVF-QNVPLLTVLVLERND-LSSLPR---  134 (390)
T ss_dssp             HHHCCCCSEEECTTSC-CCEEC---TTTTTTCTTCCEEECCSS-CCCCCCTTTT-TTCTTCCEEECCSSC-CCCCCT---
T ss_pred             hcccccCcEEECCCCc-ccccC---hhhccCCCCcCEEECCCC-CCCcCCHHHh-cCCCCCCEEECCCCc-cCcCCH---
Confidence            5778999999999984 44331   446779999999999999 5666666544 689999999999986 877775   


Q ss_pred             CCCCCcccccCCCccEEeeccCCCccccccCcccCCCCCceEEEEccCCccccccEEEeeccCcccccccccccccEEEE
Q 036454           95 RGNDAATKFIFPSLTFLRLRDLPDLTTFYSGMHILECPELRKLEVNHVDVFANLEELTLSKCIFTTWRQAQFHKLKILHF  174 (410)
Q Consensus        95 ~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~l~~L~~L~i~~~~~~~~~~~~l~~L~~L~l  174 (410)
                           ..+..+++|++|+++++ .+..++...+. .+++|++|++              ++|.+.......+++|+.|++
T Consensus       135 -----~~~~~l~~L~~L~L~~n-~l~~~~~~~~~-~l~~L~~L~l--------------~~n~l~~~~~~~l~~L~~L~l  193 (390)
T 3o6n_A          135 -----GIFHNTPKLTTLSMSNN-NLERIEDDTFQ-ATTSLQNLQL--------------SSNRLTHVDLSLIPSLFHANV  193 (390)
T ss_dssp             -----TTTTTCTTCCEEECCSS-CCCBCCTTTTS-SCTTCCEEEC--------------CSSCCSBCCGGGCTTCSEEEC
T ss_pred             -----HHhcCCCCCcEEECCCC-ccCccChhhcc-CCCCCCEEEC--------------CCCcCCccccccccccceeec
Confidence                 13467899999999998 55555444332 4455555554              444444443333666777776


Q ss_pred             EeCCCccchhhhhhhcccCceEEEeccccccccccchhhccccccCcccEEEeCCcccccccccCCCCccccccccceEE
Q 036454          175 ISDGSDFFQVGLLQNIHNLEKLVLSTCEYKKIFSCEEVEEHAEGIAQIKSLKLKKLWLIEEHLWNPDSKLDSFLQNLEFL  254 (410)
Q Consensus       175 ~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~L~~L  254 (410)
                      .......++     ..++|+.|+++++.+..+..        ..+++|+.|+++++     .+.  ....+..+++|++|
T Consensus       194 ~~n~l~~~~-----~~~~L~~L~l~~n~l~~~~~--------~~~~~L~~L~l~~n-----~l~--~~~~l~~l~~L~~L  253 (390)
T 3o6n_A          194 SYNLLSTLA-----IPIAVEELDASHNSINVVRG--------PVNVELTILKLQHN-----NLT--DTAWLLNYPGLVEV  253 (390)
T ss_dssp             CSSCCSEEE-----CCSSCSEEECCSSCCCEEEC--------CCCSSCCEEECCSS-----CCC--CCGGGGGCTTCSEE
T ss_pred             ccccccccC-----CCCcceEEECCCCeeeeccc--------cccccccEEECCCC-----CCc--ccHHHcCCCCccEE
Confidence            444443322     23578888888877666533        23477888888873     331  12456777888888


Q ss_pred             EEeccccccccc-ccCccccCccCEEEEcccCCcccccchhhhhcCCCccEEEeccCcccchhccccCCCCccccccccc
Q 036454          255 EVKKCALSLISL-VPSSASFRNLTVLKVCNCWQLISLVTPQTAKTLVQLRELRVSECNRLEEIVANDGDADDEIVFSKLK  333 (410)
Q Consensus       255 ~l~~~~~~l~~l-~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~L~  333 (410)
                      ++++|.  +..+ +..+..+++|++|+++++ ++..++.  ....+++|++|++++| .+..++..++.      +++|+
T Consensus       254 ~Ls~n~--l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~--~~~~l~~L~~L~L~~n-~l~~~~~~~~~------l~~L~  321 (390)
T 3o6n_A          254 DLSYNE--LEKIMYHPFVKMQRLERLYISNN-RLVALNL--YGQPIPTLKVLDLSHN-HLLHVERNQPQ------FDRLE  321 (390)
T ss_dssp             ECCSSC--CCEEESGGGTTCSSCCEEECCSS-CCCEEEC--SSSCCTTCCEEECCSS-CCCCCGGGHHH------HTTCS
T ss_pred             ECCCCc--CCCcChhHccccccCCEEECCCC-cCcccCc--ccCCCCCCCEEECCCC-cceecCccccc------cCcCC
Confidence            888884  4443 455667788888888776 4665542  3356788888888876 55566655555      78888


Q ss_pred             eeecCcCcccceecCCCcccCCCCccEEEEecCCC
Q 036454          334 WLFLESSESITSFCSGNYAFSFPSLEDLIVENCPK  368 (410)
Q Consensus       334 ~L~l~~c~~l~~~~~~~~~~~~~~L~~L~l~~c~~  368 (410)
                      .|++++++ ++.++..    .+++|++|++.+++.
T Consensus       322 ~L~L~~N~-i~~~~~~----~~~~L~~L~l~~N~~  351 (390)
T 3o6n_A          322 NLYLDHNS-IVTLKLS----THHTLKNLTLSHNDW  351 (390)
T ss_dssp             EEECCSSC-CCCCCCC----TTCCCSEEECCSSCE
T ss_pred             EEECCCCc-cceeCch----hhccCCEEEcCCCCc
Confidence            88888854 6665533    478888888877643

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=99.90  E-value=6e-22  Score=195.70  Aligned_cols=173  Identities=17%  Similarity=0.138  Sum_probs=120.4

Q ss_pred             ccCceEEEeccccccccccchhhccccccCcccEEEeCCcccccccccCCCCccccccccceEEEEecccccccc---cc
Q 036454          191 HNLEKLVLSTCEYKKIFSCEEVEEHAEGIAQIKSLKLKKLWLIEEHLWNPDSKLDSFLQNLEFLEVKKCALSLIS---LV  267 (410)
Q Consensus       191 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~l~~---l~  267 (410)
                      ++|+.|+++++.+.....       ...+++|++|+++++...     ...+..+..+++|++|++++|.  ++.   ++
T Consensus       302 ~~L~~L~l~~n~l~~~~~-------~~~l~~L~~L~Ls~n~l~-----~~~~~~~~~l~~L~~L~L~~N~--l~~l~~~~  367 (520)
T 2z7x_B          302 MNIKNFTVSGTRMVHMLC-------PSKISPFLHLDFSNNLLT-----DTVFENCGHLTELETLILQMNQ--LKELSKIA  367 (520)
T ss_dssp             CCCSEEEEESSCCCCCCC-------CSSCCCCCEEECCSSCCC-----TTTTTTCCCCSSCCEEECCSSC--CCBHHHHH
T ss_pred             CceeEEEcCCCccccccc-------hhhCCcccEEEeECCccC-----hhhhhhhccCCCCCEEEccCCc--cCccccch
Confidence            457777777766544321       256788999999884322     2224456788899999999884  543   33


Q ss_pred             cCccccCccCEEEEcccCCccc-ccchhhhhcCCCccEEEeccCcccchhccccCCCCccccccccceeecCcCccccee
Q 036454          268 PSSASFRNLTVLKVCNCWQLIS-LVTPQTAKTLVQLRELRVSECNRLEEIVANDGDADDEIVFSKLKWLFLESSESITSF  346 (410)
Q Consensus       268 ~~~~~~~~L~~L~l~~c~~l~~-~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~  346 (410)
                      ..+..+++|++|+++++. +.. ++. .....+++|++|++++|.-...++...        .++|+.|+++++ .++.+
T Consensus       368 ~~~~~l~~L~~L~Ls~N~-l~~~l~~-~~~~~l~~L~~L~Ls~N~l~~~~~~~l--------~~~L~~L~Ls~N-~l~~i  436 (520)
T 2z7x_B          368 EMTTQMKSLQQLDISQNS-VSYDEKK-GDCSWTKSLLSLNMSSNILTDTIFRCL--------PPRIKVLDLHSN-KIKSI  436 (520)
T ss_dssp             HHHTTCTTCCEEECCSSC-CBCCGGG-CSCCCCTTCCEEECCSSCCCGGGGGSC--------CTTCCEEECCSS-CCCCC
T ss_pred             HHHhhCCCCCEEECCCCc-CCccccc-chhccCccCCEEECcCCCCCcchhhhh--------cccCCEEECCCC-ccccc
Confidence            456778889999998774 554 442 234667889999998875433343321        268999999996 57766


Q ss_pred             cCCCcccCCCCccEEEEecCCCCcccCCC-CCCCCCcceeEecccc
Q 036454          347 CSGNYAFSFPSLEDLIVENCPKLNTFSAG-VLKTPRLQAVQNWELG  391 (410)
Q Consensus       347 ~~~~~~~~~~~L~~L~l~~c~~l~~~~~~-~~~~~~L~~l~~~~~~  391 (410)
                      +...  ..+++|++|++++| .++.+|.. +..+++|+++++++|.
T Consensus       437 p~~~--~~l~~L~~L~L~~N-~l~~l~~~~~~~l~~L~~L~l~~N~  479 (520)
T 2z7x_B          437 PKQV--VKLEALQELNVASN-QLKSVPDGIFDRLTSLQKIWLHTNP  479 (520)
T ss_dssp             CGGG--GGCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred             chhh--hcCCCCCEEECCCC-cCCccCHHHhccCCcccEEECcCCC
Confidence            6543  36999999999987 67788876 6678999999998543

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=99.90  E-value=9.1e-23  Score=210.45  Aligned_cols=314  Identities=15%  Similarity=0.113  Sum_probs=229.9

Q ss_pred             cccCCcEEEecCccccccccccCCccccccCcccEEEeccCcCccc-cCchhHHhhhh-------ccceEeeccccCcce
Q 036454           17 AATQLRELHVFHLPKLTKLWNKDPQGKLIFRNLVVVRIFDCQSLKN-IFPTSIARSLL-------RLETLSIKDCGSVEE   88 (410)
Q Consensus        17 ~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~-~~~~~~~~~l~-------~L~~L~l~~~~~l~~   88 (410)
                      .+++|+.|+++++.....+    |..+..+++|++|++++|..+.. ..|..+ ++++       +|++|+++++. +..
T Consensus       489 ~L~~L~~L~Ls~N~l~~~i----P~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i-~~L~~~~~~l~~L~~L~Ls~N~-L~~  562 (876)
T 4ecn_A          489 NLKDLTDVELYNCPNMTQL----PDFLYDLPELQSLNIACNRGISAAQLKADW-TRLADDEDTGPKIQIFYMGYNN-LEE  562 (876)
T ss_dssp             GCTTCCEEEEESCTTCCSC----CGGGGGCSSCCEEECTTCTTSCHHHHHHHH-HHHHHCTTTTTTCCEEECCSSC-CCB
T ss_pred             cCCCCCEEECcCCCCCccC----hHHHhCCCCCCEEECcCCCCcccccchHHH-HhhhhcccccCCccEEEeeCCc-CCc
Confidence            8999999999998644444    78889999999999999953554 224333 4565       99999999987 766


Q ss_pred             EeccCCCCCCCcccccCCCccEEeeccCCCccccccCcccCCCCCceEEEEccC---------Ccccc-ccEEEeeccCc
Q 036454           89 IVANDGRGNDAATKFIFPSLTFLRLRDLPDLTTFYSGMHILECPELRKLEVNHV---------DVFAN-LEELTLSKCIF  158 (410)
Q Consensus        89 ~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~~---------~~l~~-L~~L~i~~~~~  158 (410)
                      +|...       .+..+++|+.|+++++ .+..++  .+ ..+++|+.|+++++         ..+++ |+.|++++|.+
T Consensus       563 ip~~~-------~l~~L~~L~~L~Ls~N-~l~~lp--~~-~~L~~L~~L~Ls~N~l~~lp~~l~~l~~~L~~L~Ls~N~L  631 (876)
T 4ecn_A          563 FPASA-------SLQKMVKLGLLDCVHN-KVRHLE--AF-GTNVKLTDLKLDYNQIEEIPEDFCAFTDQVEGLGFSHNKL  631 (876)
T ss_dssp             CCCHH-------HHTTCTTCCEEECTTS-CCCBCC--CC-CTTSEESEEECCSSCCSCCCTTSCEECTTCCEEECCSSCC
T ss_pred             cCChh-------hhhcCCCCCEEECCCC-Ccccch--hh-cCCCcceEEECcCCccccchHHHhhccccCCEEECcCCCC
Confidence            65201       4678899999999998 555666  22 47899999999988         34567 99999999998


Q ss_pred             ccccccc----cccccEEEEEeCCCccchh---hhhh--hcccCceEEEeccccccccccchhhccccccCcccEEEeCC
Q 036454          159 TTWRQAQ----FHKLKILHFISDGSDFFQV---GLLQ--NIHNLEKLVLSTCEYKKIFSCEEVEEHAEGIAQIKSLKLKK  229 (410)
Q Consensus       159 ~~~~~~~----l~~L~~L~l~~~~~~~~~~---~~l~--~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~  229 (410)
                      ..++...    .++|+.|+++.+.+.....   ..+.  .+++|+.|++++|.+..+..     ..+..+++|+.|++++
T Consensus       632 ~~lp~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L~~lp~-----~~~~~l~~L~~L~Ls~  706 (876)
T 4ecn_A          632 KYIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPT-----ELFATGSPISTIILSN  706 (876)
T ss_dssp             CSCCSCCCTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSSCCCSCCH-----HHHHTTCCCSEEECCS
T ss_pred             CcCchhhhccccCCCCEEECcCCcCCCccccchhhhccccCCCcCEEEccCCcCCccCH-----HHHccCCCCCEEECCC
Confidence            8655433    3459999995554433211   1122  34589999999998876543     2234689999999998


Q ss_pred             cccccccccCCCCcc----ccccccceEEEEecccccccccccCcc--ccCccCEEEEcccCCcccccchhhhhcCCCcc
Q 036454          230 LWLIEEHLWNPDSKL----DSFLQNLEFLEVKKCALSLISLVPSSA--SFRNLTVLKVCNCWQLISLVTPQTAKTLVQLR  303 (410)
Q Consensus       230 c~~l~~~~~~~~~~~----~~~~~~L~~L~l~~~~~~l~~l~~~~~--~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~  303 (410)
                      + .+ ..+.......    ...+++|++|++++|  .++.+|..+.  .+++|+.|+++++ .+..++  .....+++|+
T Consensus       707 N-~L-~~ip~~~~~~~~~~l~nl~~L~~L~Ls~N--~L~~lp~~l~~~~l~~L~~L~Ls~N-~L~~lp--~~l~~L~~L~  779 (876)
T 4ecn_A          707 N-LM-TSIPENSLKPKDGNYKNTYLLTTIDLRFN--KLTSLSDDFRATTLPYLSNMDVSYN-CFSSFP--TQPLNSSQLK  779 (876)
T ss_dssp             C-CC-SCCCTTSSSCTTSCCTTGGGCCEEECCSS--CCCCCCGGGSTTTCTTCCEEECCSS-CCSSCC--CGGGGCTTCC
T ss_pred             C-cC-CccChHHhccccccccccCCccEEECCCC--CCccchHHhhhccCCCcCEEEeCCC-CCCccc--hhhhcCCCCC
Confidence            4 23 2221111110    123459999999999  5778887776  8999999999887 466665  3557899999


Q ss_pred             EEEecc------CcccchhccccCCCCccccccccceeecCcCcccceecCCCcccCCCCccEEEEecCCCCc
Q 036454          304 ELRVSE------CNRLEEIVANDGDADDEIVFSKLKWLFLESSESITSFCSGNYAFSFPSLEDLIVENCPKLN  370 (410)
Q Consensus       304 ~L~l~~------c~~l~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~l~~c~~l~  370 (410)
                      .|++++      |.-...++..+..      +++|+.|++++|. +..++...    .++|+.|++++|+...
T Consensus       780 ~L~Ls~N~~ls~N~l~~~ip~~l~~------L~~L~~L~Ls~N~-L~~Ip~~l----~~~L~~LdLs~N~l~~  841 (876)
T 4ecn_A          780 AFGIRHQRDAEGNRILRQWPTGITT------CPSLIQLQIGSND-IRKVDEKL----TPQLYILDIADNPNIS  841 (876)
T ss_dssp             EEECCCCBCTTCCBCCCCCCTTGGG------CSSCCEEECCSSC-CCBCCSCC----CSSSCEEECCSCTTCE
T ss_pred             EEECCCCCCcccccccccChHHHhc------CCCCCEEECCCCC-CCccCHhh----cCCCCEEECCCCCCCc
Confidence            999987      3334566767777      9999999999975 57777653    5899999999997654

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.90  E-value=1.5e-22  Score=203.32  Aligned_cols=296  Identities=18%  Similarity=0.185  Sum_probs=175.4

Q ss_pred             cccCCcEEEecCccccccccccCCcc-ccccCcccEEEeccCcCccccCchhHHhhhhccceEeeccccCcceEeccCCC
Q 036454           17 AATQLRELHVFHLPKLTKLWNKDPQG-KLIFRNLVVVRIFDCQSLKNIFPTSIARSLLRLETLSIKDCGSVEEIVANDGR   95 (410)
Q Consensus        17 ~~~~L~~L~l~~~~~l~~~~~~~~~~-~~~l~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~   95 (410)
                      .+++++.+++.++ .+..+    |.. +..+++|++|++++| .+..+++..+ +++++|++|+++++. +..++.    
T Consensus        49 ~l~~l~~l~l~~~-~l~~l----p~~~~~~l~~L~~L~L~~n-~l~~~~~~~~-~~l~~L~~L~L~~n~-l~~~~~----  116 (597)
T 3oja_B           49 TLNNQKIVTFKNS-TMRKL----PAALLDSFRQVELLNLNDL-QIEEIDTYAF-AYAHTIQKLYMGFNA-IRYLPP----  116 (597)
T ss_dssp             GGCCCSEEEESSC-EESEE----CTHHHHHCCCCSEEECTTS-CCCEECTTTT-TTCTTCCEEECCSSC-CCCCCT----
T ss_pred             cCCCceEEEeeCC-CCCCc----CHHHHccCCCCcEEECCCC-CCCCCChHHh-cCCCCCCEEECCCCc-CCCCCH----
Confidence            3567777777776 33333    333 456778888888777 4555655444 577888888887775 655554    


Q ss_pred             CCCCcccccCCCccEEeeccCCCccccccCcccCCCCCceEEEEccC----------CccccccEEEeeccCcccccccc
Q 036454           96 GNDAATKFIFPSLTFLRLRDLPDLTTFYSGMHILECPELRKLEVNHV----------DVFANLEELTLSKCIFTTWRQAQ  165 (410)
Q Consensus        96 ~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~~----------~~l~~L~~L~i~~~~~~~~~~~~  165 (410)
                          ..+..+++|+.|+++++ .+..++...+. .+++|++|+++++          ..+++|+.|++++|.+.......
T Consensus       117 ----~~~~~l~~L~~L~L~~n-~l~~l~~~~~~-~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~  190 (597)
T 3oja_B          117 ----HVFQNVPLLTVLVLERN-DLSSLPRGIFH-NTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVDLSL  190 (597)
T ss_dssp             ----TTTTTCTTCCEEECCSS-CCCCCCTTTTT-TCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBCCGGG
T ss_pred             ----HHHcCCCCCCEEEeeCC-CCCCCCHHHhc-cCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCcChhh
Confidence                13466778888888877 56666554433 5677777777666          33456666777666666554444


Q ss_pred             cccccEEEEEeCCCccchhhhhhhcccCceEEEeccccccccccchhhccccccCcccEEEeCCcccccccccCCCCccc
Q 036454          166 FHKLKILHFISDGSDFFQVGLLQNIHNLEKLVLSTCEYKKIFSCEEVEEHAEGIAQIKSLKLKKLWLIEEHLWNPDSKLD  245 (410)
Q Consensus       166 l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~  245 (410)
                      +++|+.|++.......++     ..++|+.|++++|.+..+..        ...++|+.|+++++     .+.  +...+
T Consensus       191 l~~L~~L~l~~n~l~~l~-----~~~~L~~L~ls~n~l~~~~~--------~~~~~L~~L~L~~n-----~l~--~~~~l  250 (597)
T 3oja_B          191 IPSLFHANVSYNLLSTLA-----IPIAVEELDASHNSINVVRG--------PVNVELTILKLQHN-----NLT--DTAWL  250 (597)
T ss_dssp             CTTCSEEECCSSCCSEEE-----CCTTCSEEECCSSCCCEEEC--------SCCSCCCEEECCSS-----CCC--CCGGG
T ss_pred             hhhhhhhhcccCcccccc-----CCchhheeeccCCccccccc--------ccCCCCCEEECCCC-----CCC--CChhh
Confidence            666666666444433322     23466666666666554433        12356777777663     221  12345


Q ss_pred             cccccceEEEEecccccccc-cccCccccCccCEEEEcccCCcccccchhhhhcCCCccEEEeccCcccchhccccCCCC
Q 036454          246 SFLQNLEFLEVKKCALSLIS-LVPSSASFRNLTVLKVCNCWQLISLVTPQTAKTLVQLRELRVSECNRLEEIVANDGDAD  324 (410)
Q Consensus       246 ~~~~~L~~L~l~~~~~~l~~-l~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~  324 (410)
                      ..+++|++|++++|.  +.. .+..++.+++|++|+++++ .+..++.  ....+++|++|++++| .+..++..++.  
T Consensus       251 ~~l~~L~~L~Ls~N~--l~~~~~~~~~~l~~L~~L~Ls~N-~l~~l~~--~~~~l~~L~~L~Ls~N-~l~~i~~~~~~--  322 (597)
T 3oja_B          251 LNYPGLVEVDLSYNE--LEKIMYHPFVKMQRLERLYISNN-RLVALNL--YGQPIPTLKVLDLSHN-HLLHVERNQPQ--  322 (597)
T ss_dssp             GGCTTCSEEECCSSC--CCEEESGGGTTCSSCCEEECTTS-CCCEEEC--SSSCCTTCCEEECCSS-CCCCCGGGHHH--
T ss_pred             ccCCCCCEEECCCCc--cCCCCHHHhcCccCCCEEECCCC-CCCCCCc--ccccCCCCcEEECCCC-CCCccCccccc--
Confidence            666677777777763  333 3444556667777777665 3555432  2345667777777664 34455554444  


Q ss_pred             ccccccccceeecCcCcccceecCCCcccCCCCccEEEEecCC
Q 036454          325 DEIVFSKLKWLFLESSESITSFCSGNYAFSFPSLEDLIVENCP  367 (410)
Q Consensus       325 ~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~l~~c~  367 (410)
                          +++|+.|+++++. +..++..    .+++|++|++++++
T Consensus       323 ----l~~L~~L~L~~N~-l~~~~~~----~~~~L~~L~l~~N~  356 (597)
T 3oja_B          323 ----FDRLENLYLDHNS-IVTLKLS----THHTLKNLTLSHND  356 (597)
T ss_dssp             ----HTTCSEEECCSSC-CCCCCCC----TTCCCSEEECCSSC
T ss_pred             ----CCCCCEEECCCCC-CCCcChh----hcCCCCEEEeeCCC
Confidence                6677777777643 4444432    36677777766654

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=99.90  E-value=3.2e-22  Score=194.35  Aligned_cols=340  Identities=16%  Similarity=0.119  Sum_probs=238.5

Q ss_pred             cccccccCccc---cccccccCCcEEEecCccccccccccCCccccccCcccEEEeccCcCccccCchhHHhhhhccceE
Q 036454            2 IFDLQEVNSEE---THSGAATQLRELHVFHLPKLTKLWNKDPQGKLIFRNLVVVRIFDCQSLKNIFPTSIARSLLRLETL   78 (410)
Q Consensus         2 ~~~~~~~~~~~---~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L   78 (410)
                      .++++......   ..++.+++|++|+++++.....+   .+..+..+++|++|++++| .+....+..+ +++++|++|
T Consensus        34 ~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i---~~~~~~~l~~L~~L~Ls~n-~l~~~~~~~~-~~l~~L~~L  108 (455)
T 3v47_A           34 YVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVI---RNNTFRGLSSLIILKLDYN-QFLQLETGAF-NGLANLEVL  108 (455)
T ss_dssp             EEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEE---CTTTTTTCTTCCEEECTTC-TTCEECTTTT-TTCTTCCEE
T ss_pred             EEEecCCccCcCChhHhccCccccEEECcCCcccceE---CcccccccccCCEEeCCCC-ccCccChhhc-cCcccCCEE
Confidence            46667665543   35788999999999998532222   1455778999999999999 4555655444 689999999


Q ss_pred             eeccccCcce-EeccCCCCCCCcccccCCCccEEeeccCCCccccccCcccCCCCCceEEEEccC----------Ccc--
Q 036454           79 SIKDCGSVEE-IVANDGRGNDAATKFIFPSLTFLRLRDLPDLTTFYSGMHILECPELRKLEVNHV----------DVF--  145 (410)
Q Consensus        79 ~l~~~~~l~~-~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~~----------~~l--  145 (410)
                      +++++. +.. .+..       ..+..+++|+.|+++++ .+........-..+++|++|+++++          ..+  
T Consensus       109 ~L~~n~-l~~~~~~~-------~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~  179 (455)
T 3v47_A          109 TLTQCN-LDGAVLSG-------NFFKPLTSLEMLVLRDN-NIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQG  179 (455)
T ss_dssp             ECTTSC-CBTHHHHS-------STTTTCTTCCEEECCSS-BCCSCCCCGGGGGCTTCCEEECTTCCBSCCCTTTSGGGTT
T ss_pred             eCCCCC-CCccccCc-------ccccCcccCCEEECCCC-ccCccCcccccCCCCcccEEeCCCCcccccChhhhhcccc
Confidence            999987 553 2321       13677899999999998 4555543322237899999999988          111  


Q ss_pred             ccccEEEeeccCcccccccc-----------cccccEEEEEeCCCccchhhhhhhc---ccCceEEEeccccccccc---
Q 036454          146 ANLEELTLSKCIFTTWRQAQ-----------FHKLKILHFISDGSDFFQVGLLQNI---HNLEKLVLSTCEYKKIFS---  208 (410)
Q Consensus       146 ~~L~~L~i~~~~~~~~~~~~-----------l~~L~~L~l~~~~~~~~~~~~l~~l---~~L~~L~l~~~~~~~~~~---  208 (410)
                      ++|+.+++++|......+..           +++|+.|+++...........+...   ++|+.|+++++.......   
T Consensus       180 ~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~  259 (455)
T 3v47_A          180 KHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHT  259 (455)
T ss_dssp             CEEEEEECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECTTCTTTSCCTTCC
T ss_pred             ccccccccccCcccccchhhccccccccccccceeeeEecCCCcccccchhhhhccccccceeeEeeccccccccccchh
Confidence            57889999998877655432           4789999996555554433444333   899999998874221100   


Q ss_pred             --cchhhcccc--ccCcccEEEeCCcccccccccCCCCccccccccceEEEEeccccccccc-ccCccccCccCEEEEcc
Q 036454          209 --CEEVEEHAE--GIAQIKSLKLKKLWLIEEHLWNPDSKLDSFLQNLEFLEVKKCALSLISL-VPSSASFRNLTVLKVCN  283 (410)
Q Consensus       209 --~~~~~~~~~--~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~l~~l-~~~~~~~~~L~~L~l~~  283 (410)
                        .......+.  ..++|+.|+++++... ..    ....+..+++|++|++++|  .+..+ +..+..+++|++|++++
T Consensus       260 ~~~~~~~~~~~~~~~~~L~~L~l~~n~l~-~~----~~~~~~~l~~L~~L~Ls~n--~l~~~~~~~~~~l~~L~~L~Ls~  332 (455)
T 3v47_A          260 NFKDPDNFTFKGLEASGVKTCDLSKSKIF-AL----LKSVFSHFTDLEQLTLAQN--EINKIDDNAFWGLTHLLKLNLSQ  332 (455)
T ss_dssp             SSCCCCTTTTGGGTTSCCCEEECCSSCCC-EE----CTTTTTTCTTCCEEECTTS--CCCEECTTTTTTCTTCCEEECCS
T ss_pred             hhccCcccccccccccCceEEEecCcccc-cc----chhhcccCCCCCEEECCCC--cccccChhHhcCcccCCEEECCC
Confidence              000001111  2378999999995433 22    2455788999999999999  45555 44677899999999988


Q ss_pred             cCCcccccchhhhhcCCCccEEEeccCcccchhccccCCCCccccccccceeecCcCcccceecCCCcccCCCCccEEEE
Q 036454          284 CWQLISLVTPQTAKTLVQLRELRVSECNRLEEIVANDGDADDEIVFSKLKWLFLESSESITSFCSGNYAFSFPSLEDLIV  363 (410)
Q Consensus       284 c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~l  363 (410)
                      + .+..+.. .....+++|++|++++|.-....+..+..      +++|++|+++++ .++.++.. .+..+++|++|++
T Consensus       333 N-~l~~~~~-~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~------l~~L~~L~L~~N-~l~~~~~~-~~~~l~~L~~L~l  402 (455)
T 3v47_A          333 N-FLGSIDS-RMFENLDKLEVLDLSYNHIRALGDQSFLG------LPNLKELALDTN-QLKSVPDG-IFDRLTSLQKIWL  402 (455)
T ss_dssp             S-CCCEECG-GGGTTCTTCCEEECCSSCCCEECTTTTTT------CTTCCEEECCSS-CCSCCCTT-TTTTCTTCCEEEC
T ss_pred             C-ccCCcCh-hHhcCcccCCEEECCCCcccccChhhccc------cccccEEECCCC-ccccCCHh-HhccCCcccEEEc
Confidence            7 4666643 45678999999999997443334566677      999999999995 67777654 3457999999999


Q ss_pred             ecCCCCccc
Q 036454          364 ENCPKLNTF  372 (410)
Q Consensus       364 ~~c~~l~~~  372 (410)
                      ++++--...
T Consensus       403 ~~N~l~~~~  411 (455)
T 3v47_A          403 HTNPWDCSC  411 (455)
T ss_dssp             CSSCBCCCT
T ss_pred             cCCCcccCC
Confidence            988654433

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=99.89  E-value=6.2e-22  Score=191.85  Aligned_cols=295  Identities=18%  Similarity=0.141  Sum_probs=188.6

Q ss_pred             ccccccccCCcEEEecCccccccccccCCccccccCcccEEEeccCcCccccCchhHHhhhhccceEeeccccCcceEec
Q 036454           12 ETHSGAATQLRELHVFHLPKLTKLWNKDPQGKLIFRNLVVVRIFDCQSLKNIFPTSIARSLLRLETLSIKDCGSVEEIVA   91 (410)
Q Consensus        12 ~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~   91 (410)
                      ...++.+++|++|+++++ .++.+    | ++..+++|++|++++| .+..++ .   +++++|++|+++++. +..+  
T Consensus        35 ~~~~~~l~~L~~L~Ls~n-~l~~~----~-~l~~l~~L~~L~Ls~n-~l~~~~-~---~~l~~L~~L~Ls~N~-l~~~--  100 (457)
T 3bz5_A           35 TISEEQLATLTSLDCHNS-SITDM----T-GIEKLTGLTKLICTSN-NITTLD-L---SQNTNLTYLACDSNK-LTNL--  100 (457)
T ss_dssp             EEEHHHHTTCCEEECCSS-CCCCC----T-TGGGCTTCSEEECCSS-CCSCCC-C---TTCTTCSEEECCSSC-CSCC--
T ss_pred             ccChhHcCCCCEEEccCC-CcccC----h-hhcccCCCCEEEccCC-cCCeEc-c---ccCCCCCEEECcCCC-Ccee--
Confidence            456888999999999998 44432    4 5779999999999999 566663 3   689999999999986 6554  


Q ss_pred             cCCCCCCCcccccCCCccEEeeccCCCccccccCcccCCCCCceEEEEccC-------CccccccEEEeeccCccccccc
Q 036454           92 NDGRGNDAATKFIFPSLTFLRLRDLPDLTTFYSGMHILECPELRKLEVNHV-------DVFANLEELTLSKCIFTTWRQA  164 (410)
Q Consensus        92 ~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~~-------~~l~~L~~L~i~~~~~~~~~~~  164 (410)
                               .+..+++|++|+++++ .+..++   + ..+++|++|+++++       ..+++|++|++++|......+.
T Consensus       101 ---------~~~~l~~L~~L~L~~N-~l~~l~---~-~~l~~L~~L~l~~N~l~~l~l~~l~~L~~L~l~~n~~~~~~~~  166 (457)
T 3bz5_A          101 ---------DVTPLTKLTYLNCDTN-KLTKLD---V-SQNPLLTYLNCARNTLTEIDVSHNTQLTELDCHLNKKITKLDV  166 (457)
T ss_dssp             ---------CCTTCTTCCEEECCSS-CCSCCC---C-TTCTTCCEEECTTSCCSCCCCTTCTTCCEEECTTCSCCCCCCC
T ss_pred             ---------ecCCCCcCCEEECCCC-cCCeec---C-CCCCcCCEEECCCCccceeccccCCcCCEEECCCCCccccccc
Confidence                     3457899999999998 566553   2 36788888888877       4456778888887744333222


Q ss_pred             c-cccccEEEEEeCCCccchhhhhhhcccCceEEEeccccccccccchhhccccccCcccEEEeCCcccccccccCCCCc
Q 036454          165 Q-FHKLKILHFISDGSDFFQVGLLQNIHNLEKLVLSTCEYKKIFSCEEVEEHAEGIAQIKSLKLKKLWLIEEHLWNPDSK  243 (410)
Q Consensus       165 ~-l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~  243 (410)
                      . +++|+.|+++...+..++   +..+++|+.|++++|.+..+ +       +..+++|+.|+++++     .+..  ..
T Consensus       167 ~~l~~L~~L~ls~n~l~~l~---l~~l~~L~~L~l~~N~l~~~-~-------l~~l~~L~~L~Ls~N-----~l~~--ip  228 (457)
T 3bz5_A          167 TPQTQLTTLDCSFNKITELD---VSQNKLLNRLNCDTNNITKL-D-------LNQNIQLTFLDCSSN-----KLTE--ID  228 (457)
T ss_dssp             TTCTTCCEEECCSSCCCCCC---CTTCTTCCEEECCSSCCSCC-C-------CTTCTTCSEEECCSS-----CCSC--CC
T ss_pred             ccCCcCCEEECCCCccceec---cccCCCCCEEECcCCcCCee-c-------cccCCCCCEEECcCC-----cccc--cC
Confidence            2 777888888666665555   56777888888887776654 2       456678888888773     3321  11


Q ss_pred             cccccccceEEEEecccccccccccCccccCccCEEEEc----------ccCCcccccchhhhhcCCCccEEEeccCccc
Q 036454          244 LDSFLQNLEFLEVKKCALSLISLVPSSASFRNLTVLKVC----------NCWQLISLVTPQTAKTLVQLRELRVSECNRL  313 (410)
Q Consensus       244 ~~~~~~~L~~L~l~~~~~~l~~l~~~~~~~~~L~~L~l~----------~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l  313 (410)
                       +..+++|+.|++++|  .++.++  .+.+++|+.|+++          +|..+..++    ...+++|+.|++++|..+
T Consensus       229 -~~~l~~L~~L~l~~N--~l~~~~--~~~l~~L~~L~l~~n~L~~L~l~~n~~~~~~~----~~~l~~L~~L~Ls~n~~l  299 (457)
T 3bz5_A          229 -VTPLTQLTYFDCSVN--PLTELD--VSTLSKLTTLHCIQTDLLEIDLTHNTQLIYFQ----AEGCRKIKELDVTHNTQL  299 (457)
T ss_dssp             -CTTCTTCSEEECCSS--CCSCCC--CTTCTTCCEEECTTCCCSCCCCTTCTTCCEEE----CTTCTTCCCCCCTTCTTC
T ss_pred             -ccccCCCCEEEeeCC--cCCCcC--HHHCCCCCEEeccCCCCCEEECCCCccCCccc----ccccccCCEEECCCCccc
Confidence             566778888888887  455444  3445555555443          332222222    145677777777777665


Q ss_pred             chhccccCCC--CccccccccceeecCcCcccceecCCCcccCCCCccEEEEecC
Q 036454          314 EEIVANDGDA--DDEIVFSKLKWLFLESSESITSFCSGNYAFSFPSLEDLIVENC  366 (410)
Q Consensus       314 ~~~~~~~~~~--~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~l~~c  366 (410)
                      ..++.....-  -+....++|+.|+++++ .++.++    ...+++|+.|+++++
T Consensus       300 ~~l~~~~~~L~~L~l~~~~~L~~L~L~~N-~l~~l~----l~~l~~L~~L~l~~N  349 (457)
T 3bz5_A          300 YLLDCQAAGITELDLSQNPKLVYLYLNNT-ELTELD----VSHNTKLKSLSCVNA  349 (457)
T ss_dssp             CEEECTTCCCSCCCCTTCTTCCEEECTTC-CCSCCC----CTTCTTCSEEECCSS
T ss_pred             ceeccCCCcceEechhhcccCCEEECCCC-cccccc----cccCCcCcEEECCCC
Confidence            5554321110  00111345555555542 344432    234677777776654

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.89  E-value=4.2e-22  Score=199.96  Aligned_cols=279  Identities=14%  Similarity=0.103  Sum_probs=215.7

Q ss_pred             cccccCCcEEEecCccccccccccCCccccccCcccEEEeccCcCccccCchhHHhhhhccceEeeccccCcceEeccCC
Q 036454           15 SGAATQLRELHVFHLPKLTKLWNKDPQGKLIFRNLVVVRIFDCQSLKNIFPTSIARSLLRLETLSIKDCGSVEEIVANDG   94 (410)
Q Consensus        15 ~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~   94 (410)
                      ++.+++|+.|+++++. ++.+.   +..+..+++|++|++++| .+..+++..+ +++++|++|+++++. +..+|.   
T Consensus        71 ~~~l~~L~~L~L~~n~-l~~~~---~~~~~~l~~L~~L~L~~n-~l~~~~~~~~-~~l~~L~~L~L~~n~-l~~l~~---  140 (597)
T 3oja_B           71 LDSFRQVELLNLNDLQ-IEEID---TYAFAYAHTIQKLYMGFN-AIRYLPPHVF-QNVPLLTVLVLERND-LSSLPR---  140 (597)
T ss_dssp             HHHCCCCSEEECTTSC-CCEEC---TTTTTTCTTCCEEECCSS-CCCCCCTTTT-TTCTTCCEEECCSSC-CCCCCT---
T ss_pred             HccCCCCcEEECCCCC-CCCCC---hHHhcCCCCCCEEECCCC-cCCCCCHHHH-cCCCCCCEEEeeCCC-CCCCCH---
Confidence            5678999999999984 44331   456789999999999999 5776766543 789999999999986 877775   


Q ss_pred             CCCCCcccccCCCccEEeeccCCCccccccCcccCCCCCceEEEEccC-------CccccccEEEeeccCcccccccccc
Q 036454           95 RGNDAATKFIFPSLTFLRLRDLPDLTTFYSGMHILECPELRKLEVNHV-------DVFANLEELTLSKCIFTTWRQAQFH  167 (410)
Q Consensus        95 ~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~~-------~~l~~L~~L~i~~~~~~~~~~~~l~  167 (410)
                           ..+..+++|+.|+++++ .+..++...+. .+++|++|+++++       ..+++|+.|++++|.+..+..  ..
T Consensus       141 -----~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~-~l~~L~~L~L~~N~l~~~~~~~l~~L~~L~l~~n~l~~l~~--~~  211 (597)
T 3oja_B          141 -----GIFHNTPKLTTLSMSNN-NLERIEDDTFQ-ATTSLQNLQLSSNRLTHVDLSLIPSLFHANVSYNLLSTLAI--PI  211 (597)
T ss_dssp             -----TTTTTCTTCCEEECCSS-CCCBCCTTTTT-TCTTCCEEECTTSCCSBCCGGGCTTCSEEECCSSCCSEEEC--CT
T ss_pred             -----HHhccCCCCCEEEeeCC-cCCCCChhhhh-cCCcCcEEECcCCCCCCcChhhhhhhhhhhcccCccccccC--Cc
Confidence                 13477899999999998 66666655443 7899999999988       557899999999988765432  57


Q ss_pred             cccEEEEEeCCCccchhhhhhhcccCceEEEeccccccccccchhhccccccCcccEEEeCCcccccccccCCCCccccc
Q 036454          168 KLKILHFISDGSDFFQVGLLQNIHNLEKLVLSTCEYKKIFSCEEVEEHAEGIAQIKSLKLKKLWLIEEHLWNPDSKLDSF  247 (410)
Q Consensus       168 ~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~  247 (410)
                      +|+.|+++...+..++...   .++|+.|++++|.+....       .+..+++|+.|+++++...     ...+..+..
T Consensus       212 ~L~~L~ls~n~l~~~~~~~---~~~L~~L~L~~n~l~~~~-------~l~~l~~L~~L~Ls~N~l~-----~~~~~~~~~  276 (597)
T 3oja_B          212 AVEELDASHNSINVVRGPV---NVELTILKLQHNNLTDTA-------WLLNYPGLVEVDLSYNELE-----KIMYHPFVK  276 (597)
T ss_dssp             TCSEEECCSSCCCEEECSC---CSCCCEEECCSSCCCCCG-------GGGGCTTCSEEECCSSCCC-----EEESGGGTT
T ss_pred             hhheeeccCCccccccccc---CCCCCEEECCCCCCCCCh-------hhccCCCCCEEECCCCccC-----CCCHHHhcC
Confidence            8999999766666655322   378999999999877653       3677899999999985332     122456778


Q ss_pred             cccceEEEEecccccccccccCccccCccCEEEEcccCCcccccchhhhhcCCCccEEEeccCcccchhccccCCCCccc
Q 036454          248 LQNLEFLEVKKCALSLISLVPSSASFRNLTVLKVCNCWQLISLVTPQTAKTLVQLRELRVSECNRLEEIVANDGDADDEI  327 (410)
Q Consensus       248 ~~~L~~L~l~~~~~~l~~l~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~  327 (410)
                      +++|++|++++|  .++.++.....+++|++|++++| .+..++  .....+++|+.|++++|. +..++  ...     
T Consensus       277 l~~L~~L~Ls~N--~l~~l~~~~~~l~~L~~L~Ls~N-~l~~i~--~~~~~l~~L~~L~L~~N~-l~~~~--~~~-----  343 (597)
T 3oja_B          277 MQRLERLYISNN--RLVALNLYGQPIPTLKVLDLSHN-HLLHVE--RNQPQFDRLENLYLDHNS-IVTLK--LST-----  343 (597)
T ss_dssp             CSSCCEEECTTS--CCCEEECSSSCCTTCCEEECCSS-CCCCCG--GGHHHHTTCSEEECCSSC-CCCCC--CCT-----
T ss_pred             ccCCCEEECCCC--CCCCCCcccccCCCCcEEECCCC-CCCccC--cccccCCCCCEEECCCCC-CCCcC--hhh-----
Confidence            899999999999  67778777788999999999887 466665  345788999999999874 44442  445     


Q ss_pred             cccccceeecCcCc
Q 036454          328 VFSKLKWLFLESSE  341 (410)
Q Consensus       328 ~~~~L~~L~l~~c~  341 (410)
                       +++|+.|++++++
T Consensus       344 -~~~L~~L~l~~N~  356 (597)
T 3oja_B          344 -HHTLKNLTLSHND  356 (597)
T ss_dssp             -TCCCSEEECCSSC
T ss_pred             -cCCCCEEEeeCCC
Confidence             8999999999865

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=99.88  E-value=1e-20  Score=188.73  Aligned_cols=338  Identities=14%  Similarity=0.067  Sum_probs=218.3

Q ss_pred             ccccCCcEEEecCccccccccccCCccccccCcccEEEeccCcCccccCchhHHhhhhccceEeeccccCcceEeccCCC
Q 036454           16 GAATQLRELHVFHLPKLTKLWNKDPQGKLIFRNLVVVRIFDCQSLKNIFPTSIARSLLRLETLSIKDCGSVEEIVANDGR   95 (410)
Q Consensus        16 ~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~   95 (410)
                      ..+...+.++++++ +++.+    |..+  .++|++|++++| .+..+++..+ .++++|++|+++++. +..++.    
T Consensus        28 ~~~~~~~~l~ls~~-~L~~i----p~~~--~~~L~~L~Ls~N-~i~~~~~~~~-~~l~~L~~L~Ls~N~-l~~~~~----   93 (562)
T 3a79_B           28 FSNELESMVDYSNR-NLTHV----PKDL--PPRTKALSLSQN-SISELRMPDI-SFLSELRVLRLSHNR-IRSLDF----   93 (562)
T ss_dssp             -----CCEEECTTS-CCCSC----CTTS--CTTCCEEECCSS-CCCCCCGGGT-TTCTTCCEEECCSCC-CCEECT----
T ss_pred             cccCCCcEEEcCCC-CCccC----CCCC--CCCcCEEECCCC-CccccChhhh-ccCCCccEEECCCCC-CCcCCH----
Confidence            33555688999987 55544    6554  389999999999 5677766554 699999999999996 877754    


Q ss_pred             CCCCcccccCCCccEEeeccCCCccccccCcccCCCCCceEEEEccC-----------CccccccEEEeeccCccccccc
Q 036454           96 GNDAATKFIFPSLTFLRLRDLPDLTTFYSGMHILECPELRKLEVNHV-----------DVFANLEELTLSKCIFTTWRQA  164 (410)
Q Consensus        96 ~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~~-----------~~l~~L~~L~i~~~~~~~~~~~  164 (410)
                          ..+..+++|++|+++++ .++.++..    .+++|++|+++++           ..+++|++|++++|.+......
T Consensus        94 ----~~~~~l~~L~~L~Ls~N-~l~~lp~~----~l~~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~~~~~  164 (562)
T 3a79_B           94 ----HVFLFNQDLEYLDVSHN-RLQNISCC----PMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQLDLL  164 (562)
T ss_dssp             ----TTTTTCTTCCEEECTTS-CCCEECSC----CCTTCSEEECCSSCCSBCCCCGGGGGCTTCCEEEEECSBCCTTTTG
T ss_pred             ----HHhCCCCCCCEEECCCC-cCCccCcc----ccccCCEEECCCCCccccCchHhhcccCcccEEecCCCccccCchh
Confidence                15678899999999998 57777665    6799999999888           3457899999999887654333


Q ss_pred             ccccc--cEEEEEeCCC--ccchhh--------------------------hhhhcccCceEEEeccc------------
Q 036454          165 QFHKL--KILHFISDGS--DFFQVG--------------------------LLQNIHNLEKLVLSTCE------------  202 (410)
Q Consensus       165 ~l~~L--~~L~l~~~~~--~~~~~~--------------------------~l~~l~~L~~L~l~~~~------------  202 (410)
                      .+++|  +.|++.....  ......                          .+.++++|+.|+++++.            
T Consensus       165 ~l~~L~L~~L~L~~n~l~~~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~~~~~~  244 (562)
T 3a79_B          165 PVAHLHLSCILLDLVSYHIKGGETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSE  244 (562)
T ss_dssp             GGTTSCEEEEEEEESSCCCCSSSCCEEEECCEEEEEEEECSSSCCCCCCEEEESSEEEEEEEEEECCSTTHHHHHHHHHH
T ss_pred             hhhhceeeEEEeecccccccccCcccccccCcceEEEEecCccchhhhhhhcccccceEEEecccccccccchHHHHHHH
Confidence            35666  8898854433  111111                          12234555566555542            


Q ss_pred             ----------------cccccccchhhccccccCcccEEEeCCcccccccccCCC-------------------------
Q 036454          203 ----------------YKKIFSCEEVEEHAEGIAQIKSLKLKKLWLIEEHLWNPD-------------------------  241 (410)
Q Consensus       203 ----------------~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~-------------------------  241 (410)
                                      +......  ........++|++|+++++.-. ..+....                         
T Consensus       245 l~~l~~L~~L~L~~~~l~~~~~~--~~~~~~~~~~L~~L~l~~n~l~-~~ip~~~~~~~~~~L~~L~~~~~~~~~~~~p~  321 (562)
T 3a79_B          245 LTRGPTLLNVTLQHIETTWKCSV--KLFQFFWPRPVEYLNIYNLTIT-ERIDREEFTYSETALKSLMIEHVKNQVFLFSK  321 (562)
T ss_dssp             HHSCSSCEEEEEEEEEECHHHHH--HHHHHHTTSSEEEEEEEEEEEC-SCCCCCCCCCCSCSCCEEEEEEEEECCCSSCH
T ss_pred             HhccCcceEEEecCCcCcHHHHH--HHHHhhhcccccEEEEeccEee-ccccchhhhcccccchheehhhcccceeecCh
Confidence                            1000000  0000011236666666654321 1111000                         


Q ss_pred             ------------------------CccccccccceEEEEecccccccccccCccccCccCEEEEcccCCcccccc-hhhh
Q 036454          242 ------------------------SKLDSFLQNLEFLEVKKCALSLISLVPSSASFRNLTVLKVCNCWQLISLVT-PQTA  296 (410)
Q Consensus       242 ------------------------~~~~~~~~~L~~L~l~~~~~~l~~l~~~~~~~~~L~~L~l~~c~~l~~~~~-~~~~  296 (410)
                                              ......+++|++|++++|. .....+..+..+++|++|+++++ .++.++. ....
T Consensus       322 ~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~  399 (562)
T 3a79_B          322 EALYSVFAEMNIKMLSISDTPFIHMVCPPSPSSFTFLNFTQNV-FTDSVFQGCSTLKRLQTLILQRN-GLKNFFKVALMT  399 (562)
T ss_dssp             HHHHHHHHTCCCSEEEEESSCCCCCCCCSSCCCCCEEECCSSC-CCTTTTTTCCSCSSCCEEECCSS-CCCBTTHHHHTT
T ss_pred             hhhhhhhccCcceEEEccCCCcccccCccCCCCceEEECCCCc-cccchhhhhcccCCCCEEECCCC-CcCCcccchhhh
Confidence                                    0001567888888888884 33335666778889999999876 4665532 1235


Q ss_pred             hcCCCccEEEeccCcccchhccc-cCCCCccccccccceeecCcCcccceecCCCcccCC-CCccEEEEecCCCCcccCC
Q 036454          297 KTLVQLRELRVSECNRLEEIVAN-DGDADDEIVFSKLKWLFLESSESITSFCSGNYAFSF-PSLEDLIVENCPKLNTFSA  374 (410)
Q Consensus       297 ~~l~~L~~L~l~~c~~l~~~~~~-~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~-~~L~~L~l~~c~~l~~~~~  374 (410)
                      ..+++|++|+++++.-...++.. +..      +++|+.|+++++. ++.....    .+ ++|++|++++| .++.+|.
T Consensus       400 ~~l~~L~~L~l~~N~l~~~~~~~~~~~------l~~L~~L~l~~n~-l~~~~~~----~l~~~L~~L~L~~N-~l~~ip~  467 (562)
T 3a79_B          400 KNMSSLETLDVSLNSLNSHAYDRTCAW------AESILVLNLSSNM-LTGSVFR----CLPPKVKVLDLHNN-RIMSIPK  467 (562)
T ss_dssp             TTCTTCCEEECTTSCCBSCCSSCCCCC------CTTCCEEECCSSC-CCGGGGS----SCCTTCSEEECCSS-CCCCCCT
T ss_pred             cCCCCCCEEECCCCcCCCccChhhhcC------cccCCEEECCCCC-CCcchhh----hhcCcCCEEECCCC-cCcccCh
Confidence            77889999999986443325443 344      7899999999865 4332222    24 69999999988 7788998


Q ss_pred             CCCCCCCcceeEecccchh
Q 036454          375 GVLKTPRLQAVQNWELGED  393 (410)
Q Consensus       375 ~~~~~~~L~~l~~~~~~~~  393 (410)
                      ....+++|++|++++|.-.
T Consensus       468 ~~~~l~~L~~L~L~~N~l~  486 (562)
T 3a79_B          468 DVTHLQALQELNVASNQLK  486 (562)
T ss_dssp             TTTSSCCCSEEECCSSCCC
T ss_pred             hhcCCCCCCEEECCCCCCC
Confidence            8888999999999865433

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=99.88  E-value=1e-20  Score=191.18  Aligned_cols=157  Identities=17%  Similarity=0.161  Sum_probs=105.8

Q ss_pred             ccCcccEEEeCCcccccccccCCCCccccccccceEEEEecccccccccccCccccCccCEEEEcccCCcccccchhhhh
Q 036454          218 GIAQIKSLKLKKLWLIEEHLWNPDSKLDSFLQNLEFLEVKKCALSLISLVPSSASFRNLTVLKVCNCWQLISLVTPQTAK  297 (410)
Q Consensus       218 ~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~l~~l~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~  297 (410)
                      .+++|+.+++..+... ..   .....+..+++++.++++.|. .....+.....+++|+.|+++++.....+.+ ....
T Consensus       418 ~l~~L~~l~l~~~~~~-~~---~~~~~~~~l~~l~~l~ls~n~-l~~~~~~~~~~~~~L~~L~Ls~N~~~~~~~~-~~~~  491 (635)
T 4g8a_A          418 GLEQLEHLDFQHSNLK-QM---SEFSVFLSLRNLIYLDISHTH-TRVAFNGIFNGLSSLEVLKMAGNSFQENFLP-DIFT  491 (635)
T ss_dssp             TCTTCCEEECTTSEEE-ST---TSSCTTTTCTTCCEEECTTSC-CEECCTTTTTTCTTCCEEECTTCEEGGGEEC-SCCT
T ss_pred             ccccccchhhhhcccc-cc---ccccccccccccccccccccc-cccccccccccchhhhhhhhhhcccccccCc-hhhh
Confidence            4456666666554332 11   122345667788888888874 3333344456788899999988754444322 3457


Q ss_pred             cCCCccEEEeccCcccchh-ccccCCCCccccccccceeecCcCcccceecCCCcccCCCCccEEEEecCCCCcccCCCC
Q 036454          298 TLVQLRELRVSECNRLEEI-VANDGDADDEIVFSKLKWLFLESSESITSFCSGNYAFSFPSLEDLIVENCPKLNTFSAGV  376 (410)
Q Consensus       298 ~l~~L~~L~l~~c~~l~~~-~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~  376 (410)
                      .+++|++|++++| .++.+ +..++.      +++|+.|+|+++ +++.+... .+..+++|++|+++++.--...|..+
T Consensus       492 ~l~~L~~L~Ls~N-~L~~l~~~~f~~------l~~L~~L~Ls~N-~l~~l~~~-~~~~l~~L~~L~Ls~N~l~~~~~~~l  562 (635)
T 4g8a_A          492 ELRNLTFLDLSQC-QLEQLSPTAFNS------LSSLQVLNMSHN-NFFSLDTF-PYKCLNSLQVLDYSLNHIMTSKKQEL  562 (635)
T ss_dssp             TCTTCCEEECTTS-CCCEECTTTTTT------CTTCCEEECTTS-CCCBCCCG-GGTTCTTCCEEECTTSCCCBCCSSCT
T ss_pred             hccccCEEECCCC-ccCCcChHHHcC------CCCCCEEECCCC-cCCCCChh-HHhCCCCCCEEECCCCcCCCCCHHHH
Confidence            7899999999997 44444 555666      899999999995 57777654 34578999999998874433345555


Q ss_pred             CCC-CCcceeEecc
Q 036454          377 LKT-PRLQAVQNWE  389 (410)
Q Consensus       377 ~~~-~~L~~l~~~~  389 (410)
                      ..+ ++|++|++++
T Consensus       563 ~~l~~~L~~L~L~~  576 (635)
T 4g8a_A          563 QHFPSSLAFLNLTQ  576 (635)
T ss_dssp             TCCCTTCCEEECTT
T ss_pred             HhhhCcCCEEEeeC
Confidence            555 6899999984

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=99.86  E-value=4e-20  Score=178.97  Aligned_cols=251  Identities=18%  Similarity=0.142  Sum_probs=114.3

Q ss_pred             cccCCCccEEeeccCCCccccccCcccCCCCCceEEEEccC--------CccccccEEEeeccCcccccccccccccEEE
Q 036454          102 KFIFPSLTFLRLRDLPDLTTFYSGMHILECPELRKLEVNHV--------DVFANLEELTLSKCIFTTWRQAQFHKLKILH  173 (410)
Q Consensus       102 ~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~~--------~~l~~L~~L~i~~~~~~~~~~~~l~~L~~L~  173 (410)
                      +..+++|++|+++++ .++.++.     ..++|++|+++++        ..+++|+.|++++|.+..++.. .++|+.|+
T Consensus       149 ~~~l~~L~~L~l~~N-~l~~lp~-----~~~~L~~L~L~~n~l~~l~~~~~l~~L~~L~l~~N~l~~l~~~-~~~L~~L~  221 (454)
T 1jl5_A          149 LQNSSFLKIIDVDNN-SLKKLPD-----LPPSLEFIAAGNNQLEELPELQNLPFLTAIYADNNSLKKLPDL-PLSLESIV  221 (454)
T ss_dssp             CTTCTTCCEEECCSS-CCSCCCC-----CCTTCCEEECCSSCCSSCCCCTTCTTCCEEECCSSCCSSCCCC-CTTCCEEE
T ss_pred             cCCCCCCCEEECCCC-cCcccCC-----CcccccEEECcCCcCCcCccccCCCCCCEEECCCCcCCcCCCC-cCcccEEE
Confidence            344455555555554 3333222     1235555555544        2334555555555554443221 34556666


Q ss_pred             EEeCCCccchhhhhhhcccCceEEEeccccccccccchhhccccccCcccEEEeCCcccccccccCCCCccccccccceE
Q 036454          174 FISDGSDFFQVGLLQNIHNLEKLVLSTCEYKKIFSCEEVEEHAEGIAQIKSLKLKKLWLIEEHLWNPDSKLDSFLQNLEF  253 (410)
Q Consensus       174 l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~L~~  253 (410)
                      +.......++  .+..+++|+.|++++|.+..+..         .+++|++|+++++.-.  .+       ...+++|++
T Consensus       222 l~~n~l~~lp--~~~~l~~L~~L~l~~N~l~~l~~---------~~~~L~~L~l~~N~l~--~l-------~~~~~~L~~  281 (454)
T 1jl5_A          222 AGNNILEELP--ELQNLPFLTTIYADNNLLKTLPD---------LPPSLEALNVRDNYLT--DL-------PELPQSLTF  281 (454)
T ss_dssp             CCSSCCSSCC--CCTTCTTCCEEECCSSCCSSCCS---------CCTTCCEEECCSSCCS--CC-------CCCCTTCCE
T ss_pred             CcCCcCCccc--ccCCCCCCCEEECCCCcCCcccc---------cccccCEEECCCCccc--cc-------CcccCcCCE
Confidence            5444444444  24555666666666655544322         1255666666553211  11       112356666


Q ss_pred             EEEecccccccccccCccccCccCEEEEcccCCcccccchhhhhcCCCccEEEeccCcccchhccccCCCCccccccccc
Q 036454          254 LEVKKCALSLISLVPSSASFRNLTVLKVCNCWQLISLVTPQTAKTLVQLRELRVSECNRLEEIVANDGDADDEIVFSKLK  333 (410)
Q Consensus       254 L~l~~~~~~l~~l~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~L~  333 (410)
                      |++++|  .++.++.   ..++|++|+++++ .+..++     ...++|++|+++++ .++.++..         +++|+
T Consensus       282 L~ls~N--~l~~l~~---~~~~L~~L~l~~N-~l~~i~-----~~~~~L~~L~Ls~N-~l~~lp~~---------~~~L~  340 (454)
T 1jl5_A          282 LDVSEN--IFSGLSE---LPPNLYYLNASSN-EIRSLC-----DLPPSLEELNVSNN-KLIELPAL---------PPRLE  340 (454)
T ss_dssp             EECCSS--CCSEESC---CCTTCCEEECCSS-CCSEEC-----CCCTTCCEEECCSS-CCSCCCCC---------CTTCC
T ss_pred             EECcCC--ccCcccC---cCCcCCEEECcCC-cCCccc-----CCcCcCCEEECCCC-cccccccc---------CCcCC
Confidence            666666  3443322   1255666666554 344332     12247777777764 34444331         57788


Q ss_pred             eeecCcCcccceecCCCcccCCCCccEEEEecCCCCc--ccCCCCCCC-------------CCcceeEecccchhhcccc
Q 036454          334 WLFLESSESITSFCSGNYAFSFPSLEDLIVENCPKLN--TFSAGVLKT-------------PRLQAVQNWELGEDFWAGD  398 (410)
Q Consensus       334 ~L~l~~c~~l~~~~~~~~~~~~~~L~~L~l~~c~~l~--~~~~~~~~~-------------~~L~~l~~~~~~~~~~~~~  398 (410)
                      .|+++++ .++.++.     .+++|++|++++++-..  .+|..+..+             ++|++++++++.-..+ +.
T Consensus       341 ~L~L~~N-~l~~lp~-----~l~~L~~L~L~~N~l~~l~~ip~~l~~L~~n~~~~~i~~~~~~L~~L~ls~N~l~~~-~~  413 (454)
T 1jl5_A          341 RLIASFN-HLAEVPE-----LPQNLKQLHVEYNPLREFPDIPESVEDLRMNSHLAEVPELPQNLKQLHVETNPLREF-PD  413 (454)
T ss_dssp             EEECCSS-CCSCCCC-----CCTTCCEEECCSSCCSSCCCCCTTCCEEECCC----------------------------
T ss_pred             EEECCCC-ccccccc-----hhhhccEEECCCCCCCcCCCChHHHHhhhhcccccccccccCcCCEEECCCCcCCcc-cc
Confidence            8888875 4555544     26788888887764433  455555444             6788888863322111 24


Q ss_pred             hhhhhhhhe
Q 036454          399 VNTTLQHLK  407 (410)
Q Consensus       399 ~~~~~~~l~  407 (410)
                      ++.+++++.
T Consensus       414 iP~sl~~L~  422 (454)
T 1jl5_A          414 IPESVEDLR  422 (454)
T ss_dssp             ---------
T ss_pred             chhhHhhee
Confidence            455555544

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=99.86  E-value=1.3e-20  Score=182.67  Aligned_cols=283  Identities=20%  Similarity=0.127  Sum_probs=203.4

Q ss_pred             cccccccCcccc-ccccccCCcEEEecCccccccccccCCccccccCcccEEEeccCcCccccCchhHHhhhhccceEee
Q 036454            2 IFDLQEVNSEET-HSGAATQLRELHVFHLPKLTKLWNKDPQGKLIFRNLVVVRIFDCQSLKNIFPTSIARSLLRLETLSI   80 (410)
Q Consensus         2 ~~~~~~~~~~~~-~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l   80 (410)
                      .++++.....+. .++.+++|++|+++++. ++.+    +  +..+++|++|++++| .+..++ .   +++++|++|++
T Consensus        46 ~L~Ls~n~l~~~~~l~~l~~L~~L~Ls~n~-l~~~----~--~~~l~~L~~L~Ls~N-~l~~~~-~---~~l~~L~~L~L  113 (457)
T 3bz5_A           46 SLDCHNSSITDMTGIEKLTGLTKLICTSNN-ITTL----D--LSQNTNLTYLACDSN-KLTNLD-V---TPLTKLTYLNC  113 (457)
T ss_dssp             EEECCSSCCCCCTTGGGCTTCSEEECCSSC-CSCC----C--CTTCTTCSEEECCSS-CCSCCC-C---TTCTTCCEEEC
T ss_pred             EEEccCCCcccChhhcccCCCCEEEccCCc-CCeE----c--cccCCCCCEEECcCC-CCceee-c---CCCCcCCEEEC
Confidence            455666544332 47889999999999984 4433    3  668999999999999 566553 2   68999999999


Q ss_pred             ccccCcceEeccCCCCCCCcccccCCCccEEeeccCCCccccccCcccCCCCCceEEEEccC--------CccccccEEE
Q 036454           81 KDCGSVEEIVANDGRGNDAATKFIFPSLTFLRLRDLPDLTTFYSGMHILECPELRKLEVNHV--------DVFANLEELT  152 (410)
Q Consensus        81 ~~~~~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~~--------~~l~~L~~L~  152 (410)
                      +++. +..+           .+..+++|+.|+++++ .++.++   + ..+++|++|++.+|        ..+++|+.|+
T Consensus       114 ~~N~-l~~l-----------~~~~l~~L~~L~l~~N-~l~~l~---l-~~l~~L~~L~l~~n~~~~~~~~~~l~~L~~L~  176 (457)
T 3bz5_A          114 DTNK-LTKL-----------DVSQNPLLTYLNCARN-TLTEID---V-SHNTQLTELDCHLNKKITKLDVTPQTQLTTLD  176 (457)
T ss_dssp             CSSC-CSCC-----------CCTTCTTCCEEECTTS-CCSCCC---C-TTCTTCCEEECTTCSCCCCCCCTTCTTCCEEE
T ss_pred             CCCc-CCee-----------cCCCCCcCCEEECCCC-ccceec---c-ccCCcCCEEECCCCCcccccccccCCcCCEEE
Confidence            9986 6554           3467799999999998 555553   2 36899999999888        4568899999


Q ss_pred             eeccCcccccccccccccEEEEEeCCCccchhhhhhhcccCceEEEeccccccccccchhhccccccCcccEEEeCCccc
Q 036454          153 LSKCIFTTWRQAQFHKLKILHFISDGSDFFQVGLLQNIHNLEKLVLSTCEYKKIFSCEEVEEHAEGIAQIKSLKLKKLWL  232 (410)
Q Consensus       153 i~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~  232 (410)
                      +++|.+..++...+++|+.|++....+...+   +..+++|+.|++++|.+..+ +       +..+++|+.|+++++  
T Consensus       177 ls~n~l~~l~l~~l~~L~~L~l~~N~l~~~~---l~~l~~L~~L~Ls~N~l~~i-p-------~~~l~~L~~L~l~~N--  243 (457)
T 3bz5_A          177 CSFNKITELDVSQNKLLNRLNCDTNNITKLD---LNQNIQLTFLDCSSNKLTEI-D-------VTPLTQLTYFDCSVN--  243 (457)
T ss_dssp             CCSSCCCCCCCTTCTTCCEEECCSSCCSCCC---CTTCTTCSEEECCSSCCSCC-C-------CTTCTTCSEEECCSS--
T ss_pred             CCCCccceeccccCCCCCEEECcCCcCCeec---cccCCCCCEEECcCCccccc-C-------ccccCCCCEEEeeCC--
Confidence            9999988876444899999999766666653   67889999999999988774 2       567899999999984  


Q ss_pred             ccccccCCCCccccccccce----------EEEEecccccccccccCccccCccCEEEEcccCCcccccch------hhh
Q 036454          233 IEEHLWNPDSKLDSFLQNLE----------FLEVKKCALSLISLVPSSASFRNLTVLKVCNCWQLISLVTP------QTA  296 (410)
Q Consensus       233 l~~~~~~~~~~~~~~~~~L~----------~L~l~~~~~~l~~l~~~~~~~~~L~~L~l~~c~~l~~~~~~------~~~  296 (410)
                         .+....   ...+++|+          .|++++|. ....++  .+.+++|++|++++|..+..++..      ..+
T Consensus       244 ---~l~~~~---~~~l~~L~~L~l~~n~L~~L~l~~n~-~~~~~~--~~~l~~L~~L~Ls~n~~l~~l~~~~~~L~~L~l  314 (457)
T 3bz5_A          244 ---PLTELD---VSTLSKLTTLHCIQTDLLEIDLTHNT-QLIYFQ--AEGCRKIKELDVTHNTQLYLLDCQAAGITELDL  314 (457)
T ss_dssp             ---CCSCCC---CTTCTTCCEEECTTCCCSCCCCTTCT-TCCEEE--CTTCTTCCCCCCTTCTTCCEEECTTCCCSCCCC
T ss_pred             ---cCCCcC---HHHCCCCCEEeccCCCCCEEECCCCc-cCCccc--ccccccCCEEECCCCcccceeccCCCcceEech
Confidence               332111   33445554          45555554 444443  356789999999998765555420      013


Q ss_pred             hcCCCccEEEeccCcccchhccccCCCCccccccccceeecCcCcccce
Q 036454          297 KTLVQLRELRVSECNRLEEIVANDGDADDEIVFSKLKWLFLESSESITS  345 (410)
Q Consensus       297 ~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~  345 (410)
                      ..+++|++|+++++ .++.+  .++.      +++|+.|++++ +.+++
T Consensus       315 ~~~~~L~~L~L~~N-~l~~l--~l~~------l~~L~~L~l~~-N~l~~  353 (457)
T 3bz5_A          315 SQNPKLVYLYLNNT-ELTEL--DVSH------NTKLKSLSCVN-AHIQD  353 (457)
T ss_dssp             TTCTTCCEEECTTC-CCSCC--CCTT------CTTCSEEECCS-SCCCB
T ss_pred             hhcccCCEEECCCC-ccccc--cccc------CCcCcEEECCC-CCCCC
Confidence            55677888888764 44444  3556      89999999987 34554

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=99.85  E-value=2.1e-20  Score=173.95  Aligned_cols=254  Identities=13%  Similarity=0.127  Sum_probs=177.1

Q ss_pred             cCCcEEEecCccccccccccCCccccccCcccEEEeccCcCccccCchhHHhhhhccceEeeccccCcceEeccCCCCCC
Q 036454           19 TQLRELHVFHLPKLTKLWNKDPQGKLIFRNLVVVRIFDCQSLKNIFPTSIARSLLRLETLSIKDCGSVEEIVANDGRGND   98 (410)
Q Consensus        19 ~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~   98 (410)
                      .+++.++++++ .++.+    |..+  .++|++|+++++ .+..+++..+ .++++|++|+++++. +..++.       
T Consensus        33 c~l~~l~~~~~-~l~~i----p~~~--~~~l~~L~l~~n-~i~~~~~~~~-~~l~~L~~L~L~~n~-l~~~~~-------   95 (332)
T 2ft3_A           33 CHLRVVQCSDL-GLKAV----PKEI--SPDTTLLDLQNN-DISELRKDDF-KGLQHLYALVLVNNK-ISKIHE-------   95 (332)
T ss_dssp             EETTEEECCSS-CCSSC----CSCC--CTTCCEEECCSS-CCCEECTTTT-TTCTTCCEEECCSSC-CCEECG-------
T ss_pred             ccCCEEECCCC-Ccccc----CCCC--CCCCeEEECCCC-cCCccCHhHh-hCCCCCcEEECCCCc-cCccCH-------
Confidence            37899998887 44444    5543  479999999988 5666655444 689999999999886 777643       


Q ss_pred             CcccccCCCccEEeeccCCCccccccCcccCCCCCceEEEEccC----------CccccccEEEeeccCccc--ccccc-
Q 036454           99 AATKFIFPSLTFLRLRDLPDLTTFYSGMHILECPELRKLEVNHV----------DVFANLEELTLSKCIFTT--WRQAQ-  165 (410)
Q Consensus        99 ~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~~----------~~l~~L~~L~i~~~~~~~--~~~~~-  165 (410)
                       ..+..+++|++|+++++ .+..++...    .++|++|+++++          ..+++|+.|++++|.+..  ..+.. 
T Consensus        96 -~~~~~l~~L~~L~L~~n-~l~~l~~~~----~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~  169 (332)
T 2ft3_A           96 -KAFSPLRKLQKLYISKN-HLVEIPPNL----PSSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAF  169 (332)
T ss_dssp             -GGSTTCTTCCEEECCSS-CCCSCCSSC----CTTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSS
T ss_pred             -hHhhCcCCCCEEECCCC-cCCccCccc----cccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccc
Confidence             15677899999999987 566665543    389999999887          456889999999998854  32322 


Q ss_pred             -cccccEEEEEeCCCccchhhhhhhcccCceEEEeccccccccccchhhccccccCcccEEEeCCcccccccccCCCCcc
Q 036454          166 -FHKLKILHFISDGSDFFQVGLLQNIHNLEKLVLSTCEYKKIFSCEEVEEHAEGIAQIKSLKLKKLWLIEEHLWNPDSKL  244 (410)
Q Consensus       166 -l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~  244 (410)
                       ..+|+.|++.......++...   .++|+.|++++|.+..+..     ..+..+++|++|+++++     .+.......
T Consensus       170 ~~l~L~~L~l~~n~l~~l~~~~---~~~L~~L~l~~n~i~~~~~-----~~l~~l~~L~~L~L~~N-----~l~~~~~~~  236 (332)
T 2ft3_A          170 DGLKLNYLRISEAKLTGIPKDL---PETLNELHLDHNKIQAIEL-----EDLLRYSKLYRLGLGHN-----QIRMIENGS  236 (332)
T ss_dssp             CSCCCSCCBCCSSBCSSCCSSS---CSSCSCCBCCSSCCCCCCT-----TSSTTCTTCSCCBCCSS-----CCCCCCTTG
T ss_pred             cCCccCEEECcCCCCCccCccc---cCCCCEEECCCCcCCccCH-----HHhcCCCCCCEEECCCC-----cCCcCChhH
Confidence             128899999666666666432   2799999999998776643     13567788899988883     332223345


Q ss_pred             ccccccceEEEEecccccccccccCccccCccCEEEEcccCCcccccchhhhh-----cCCCccEEEeccCc
Q 036454          245 DSFLQNLEFLEVKKCALSLISLVPSSASFRNLTVLKVCNCWQLISLVTPQTAK-----TLVQLRELRVSECN  311 (410)
Q Consensus       245 ~~~~~~L~~L~l~~~~~~l~~l~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~-----~l~~L~~L~l~~c~  311 (410)
                      +..+++|++|++++|  .++.+|..+..+++|++|+++++ .++.++......     ..++|+.|++.+++
T Consensus       237 ~~~l~~L~~L~L~~N--~l~~lp~~l~~l~~L~~L~l~~N-~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~  305 (332)
T 2ft3_A          237 LSFLPTLRELHLDNN--KLSRVPAGLPDLKLLQVVYLHTN-NITKVGVNDFCPVGFGVKRAYYNGISLFNNP  305 (332)
T ss_dssp             GGGCTTCCEEECCSS--CCCBCCTTGGGCTTCCEEECCSS-CCCBCCTTSSSCSSCCSSSCCBSEEECCSSS
T ss_pred             hhCCCCCCEEECCCC--cCeecChhhhcCccCCEEECCCC-CCCccChhHccccccccccccccceEeecCc
Confidence            677888888888888  56677777777888888888765 365554311111     13455555555543

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=99.84  E-value=3.5e-20  Score=179.42  Aligned_cols=303  Identities=17%  Similarity=0.124  Sum_probs=146.0

Q ss_pred             cccccCCcEEEecCccccccccccCCccccccCcc-------------cEEEeccCcCccccCchhHHhhhhccceEeec
Q 036454           15 SGAATQLRELHVFHLPKLTKLWNKDPQGKLIFRNL-------------VVVRIFDCQSLKNIFPTSIARSLLRLETLSIK   81 (410)
Q Consensus        15 ~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L-------------~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~   81 (410)
                      ++++++|+.|+++++. +.   ...|..++.+.+|             ++|++++| .+..++..     .++|++|+++
T Consensus        30 i~~L~~L~~L~l~~n~-~~---~~~p~~~~~l~~L~~l~l~~c~~~~l~~L~l~~~-~l~~lp~~-----~~~L~~L~l~   99 (454)
T 1jl5_A           30 AENVKSKTEYYNAWSE-WE---RNAPPGNGEQREMAVSRLRDCLDRQAHELELNNL-GLSSLPEL-----PPHLESLVAS   99 (454)
T ss_dssp             ----CCHHHHHHHHHH-HH---HTSCTTSCCCHHHHHHHHHHHHHHTCSEEECTTS-CCSCCCSC-----CTTCSEEECC
T ss_pred             HhcccchhhhhccCCc-cc---ccCCcccccchhcchhhhhhhhccCCCEEEecCC-ccccCCCC-----cCCCCEEEcc
Confidence            6777777777777764 22   1225666666554             77777777 35544332     3567777776


Q ss_pred             cccCcceEeccCCCCCCCcccccCCCccEEeeccCCCccccccCcccCCCCCceEEEEccC--------CccccccEEEe
Q 036454           82 DCGSVEEIVANDGRGNDAATKFIFPSLTFLRLRDLPDLTTFYSGMHILECPELRKLEVNHV--------DVFANLEELTL  153 (410)
Q Consensus        82 ~~~~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~~--------~~l~~L~~L~i  153 (410)
                      ++. ++.+|.            .+++|+.|+++++ .+..++.     ..++|++|+++++        ..+++|++|++
T Consensus       100 ~n~-l~~lp~------------~~~~L~~L~l~~n-~l~~l~~-----~~~~L~~L~L~~n~l~~lp~~~~l~~L~~L~l  160 (454)
T 1jl5_A          100 CNS-LTELPE------------LPQSLKSLLVDNN-NLKALSD-----LPPLLEYLGVSNNQLEKLPELQNSSFLKIIDV  160 (454)
T ss_dssp             SSC-CSSCCC------------CCTTCCEEECCSS-CCSCCCS-----CCTTCCEEECCSSCCSSCCCCTTCTTCCEEEC
T ss_pred             CCc-CCcccc------------ccCCCcEEECCCC-ccCcccC-----CCCCCCEEECcCCCCCCCcccCCCCCCCEEEC
Confidence            664 554442            1134444444443 2222211     0134444444444        22334444444


Q ss_pred             eccCcccccccccccccEEEEEeCCCccchhhhhhhcccCceEEEeccccccccccc---------------hhhccccc
Q 036454          154 SKCIFTTWRQAQFHKLKILHFISDGSDFFQVGLLQNIHNLEKLVLSTCEYKKIFSCE---------------EVEEHAEG  218 (410)
Q Consensus       154 ~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~---------------~~~~~~~~  218 (410)
                      ++|.+..++. ...+|+.|++.......++  .++++++|+.|++++|.+..+....               +.  .+..
T Consensus       161 ~~N~l~~lp~-~~~~L~~L~L~~n~l~~l~--~~~~l~~L~~L~l~~N~l~~l~~~~~~L~~L~l~~n~l~~lp--~~~~  235 (454)
T 1jl5_A          161 DNNSLKKLPD-LPPSLEFIAAGNNQLEELP--ELQNLPFLTAIYADNNSLKKLPDLPLSLESIVAGNNILEELP--ELQN  235 (454)
T ss_dssp             CSSCCSCCCC-CCTTCCEEECCSSCCSSCC--CCTTCTTCCEEECCSSCCSSCCCCCTTCCEEECCSSCCSSCC--CCTT
T ss_pred             CCCcCcccCC-CcccccEEECcCCcCCcCc--cccCCCCCCEEECCCCcCCcCCCCcCcccEEECcCCcCCccc--ccCC
Confidence            4444433221 1334444444333333333  2344444444444444433321100               00  0334


Q ss_pred             cCcccEEEeCCcccccccccCCCCccccccccceEEEEecccccccccccCccccCccCEEEEcccCCcccccchhhhhc
Q 036454          219 IAQIKSLKLKKLWLIEEHLWNPDSKLDSFLQNLEFLEVKKCALSLISLVPSSASFRNLTVLKVCNCWQLISLVTPQTAKT  298 (410)
Q Consensus       219 l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~l~~l~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~  298 (410)
                      +++|++|+++++. + ..+       ...+++|++|++++|  .++.++.   .+++|++|+++++ .+..++     ..
T Consensus       236 l~~L~~L~l~~N~-l-~~l-------~~~~~~L~~L~l~~N--~l~~l~~---~~~~L~~L~ls~N-~l~~l~-----~~  295 (454)
T 1jl5_A          236 LPFLTTIYADNNL-L-KTL-------PDLPPSLEALNVRDN--YLTDLPE---LPQSLTFLDVSEN-IFSGLS-----EL  295 (454)
T ss_dssp             CTTCCEEECCSSC-C-SSC-------CSCCTTCCEEECCSS--CCSCCCC---CCTTCCEEECCSS-CCSEES-----CC
T ss_pred             CCCCCEEECCCCc-C-Ccc-------cccccccCEEECCCC--cccccCc---ccCcCCEEECcCC-ccCccc-----Cc
Confidence            4445555554421 1 011       112245555555554  2333332   1245555555444 233332     11


Q ss_pred             CCCccEEEeccCcccchhccccCCCCccccccccceeecCcCcccceecCCCcccCCCCccEEEEecCCCCcccCCCCCC
Q 036454          299 LVQLRELRVSECNRLEEIVANDGDADDEIVFSKLKWLFLESSESITSFCSGNYAFSFPSLEDLIVENCPKLNTFSAGVLK  378 (410)
Q Consensus       299 l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~  378 (410)
                      .++|+.|+++++ .++.++    .     ..++|+.|+++++ .++.++.     .+++|++|++++| .++.+|.   .
T Consensus       296 ~~~L~~L~l~~N-~l~~i~----~-----~~~~L~~L~Ls~N-~l~~lp~-----~~~~L~~L~L~~N-~l~~lp~---~  355 (454)
T 1jl5_A          296 PPNLYYLNASSN-EIRSLC----D-----LPPSLEELNVSNN-KLIELPA-----LPPRLERLIASFN-HLAEVPE---L  355 (454)
T ss_dssp             CTTCCEEECCSS-CCSEEC----C-----CCTTCCEEECCSS-CCSCCCC-----CCTTCCEEECCSS-CCSCCCC---C
T ss_pred             CCcCCEEECcCC-cCCccc----C-----CcCcCCEEECCCC-ccccccc-----cCCcCCEEECCCC-ccccccc---h
Confidence            245666666554 222221    1     1358888888884 4665543     2689999999887 6677887   3


Q ss_pred             CCCcceeEecccc
Q 036454          379 TPRLQAVQNWELG  391 (410)
Q Consensus       379 ~~~L~~l~~~~~~  391 (410)
                      +++|+++++++|.
T Consensus       356 l~~L~~L~L~~N~  368 (454)
T 1jl5_A          356 PQNLKQLHVEYNP  368 (454)
T ss_dssp             CTTCCEEECCSSC
T ss_pred             hhhccEEECCCCC
Confidence            7899999998543

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=99.84  E-value=9.2e-20  Score=169.08  Aligned_cols=202  Identities=21%  Similarity=0.255  Sum_probs=153.6

Q ss_pred             cccccEEEEEeCCCccchhhhhhhcccCceEEEeccccccccccchhhccccccCcccEEEeCCcccccccccCCC----
Q 036454          166 FHKLKILHFISDGSDFFQVGLLQNIHNLEKLVLSTCEYKKIFSCEEVEEHAEGIAQIKSLKLKKLWLIEEHLWNPD----  241 (410)
Q Consensus       166 l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~----  241 (410)
                      +++|++|++....+..+| ..+.++++|+.|++++|.+..+..      .+..+++|++|++++|... ..+....    
T Consensus       103 l~~L~~L~L~~n~l~~lp-~~~~~l~~L~~L~Ls~n~l~~lp~------~l~~l~~L~~L~L~~n~~~-~~~p~~~~~~~  174 (328)
T 4fcg_A          103 LSHLQHMTIDAAGLMELP-DTMQQFAGLETLTLARNPLRALPA------SIASLNRLRELSIRACPEL-TELPEPLASTD  174 (328)
T ss_dssp             GTTCSEEEEESSCCCCCC-SCGGGGTTCSEEEEESCCCCCCCG------GGGGCTTCCEEEEEEETTC-CCCCSCSEEEC
T ss_pred             CCCCCEEECCCCCccchh-HHHhccCCCCEEECCCCccccCcH------HHhcCcCCCEEECCCCCCc-cccChhHhhcc
Confidence            444444444333333333 235677788888888777665543      4566778888888776555 3331110    


Q ss_pred             -CccccccccceEEEEecccccccccccCccccCccCEEEEcccCCcccccchhhhhcCCCccEEEeccCcccchhcccc
Q 036454          242 -SKLDSFLQNLEFLEVKKCALSLISLVPSSASFRNLTVLKVCNCWQLISLVTPQTAKTLVQLRELRVSECNRLEEIVAND  320 (410)
Q Consensus       242 -~~~~~~~~~L~~L~l~~~~~~l~~l~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~  320 (410)
                       ...+..+++|++|++++|  .++.+|..++.+++|++|++++| .+..++.  ....+++|++|++++|.....++..+
T Consensus       175 ~~~~~~~l~~L~~L~L~~n--~l~~lp~~l~~l~~L~~L~L~~N-~l~~l~~--~l~~l~~L~~L~Ls~n~~~~~~p~~~  249 (328)
T 4fcg_A          175 ASGEHQGLVNLQSLRLEWT--GIRSLPASIANLQNLKSLKIRNS-PLSALGP--AIHHLPKLEELDLRGCTALRNYPPIF  249 (328)
T ss_dssp             -CCCEEESTTCCEEEEEEE--CCCCCCGGGGGCTTCCEEEEESS-CCCCCCG--GGGGCTTCCEEECTTCTTCCBCCCCT
T ss_pred             chhhhccCCCCCEEECcCC--CcCcchHhhcCCCCCCEEEccCC-CCCcCch--hhccCCCCCEEECcCCcchhhhHHHh
Confidence             012445899999999999  57788888889999999999887 4666653  46889999999999998888888888


Q ss_pred             CCCCccccccccceeecCcCcccceecCCCcccCCCCccEEEEecCCCCcccCCCCCCCCCcceeEec
Q 036454          321 GDADDEIVFSKLKWLFLESSESITSFCSGNYAFSFPSLEDLIVENCPKLNTFSAGVLKTPRLQAVQNW  388 (410)
Q Consensus       321 ~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~L~~l~~~  388 (410)
                      +.      +++|+.|++++|+.+..++..  +..+++|++|++++|+.+..+|..+..+++|+.+.+.
T Consensus       250 ~~------l~~L~~L~L~~n~~~~~~p~~--~~~l~~L~~L~L~~n~~~~~iP~~l~~L~~L~~l~l~  309 (328)
T 4fcg_A          250 GG------RAPLKRLILKDCSNLLTLPLD--IHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVP  309 (328)
T ss_dssp             TC------CCCCCEEECTTCTTCCBCCTT--GGGCTTCCEEECTTCTTCCCCCGGGGGSCTTCEEECC
T ss_pred             cC------CCCCCEEECCCCCchhhcchh--hhcCCCCCEEeCCCCCchhhccHHHhhccCceEEeCC
Confidence            88      999999999999888877754  3569999999999999999999999999999999986

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=99.83  E-value=2.1e-19  Score=166.98  Aligned_cols=278  Identities=14%  Similarity=0.126  Sum_probs=199.9

Q ss_pred             ccCCcEEEecCccccccccccCCccccccCcccEEEeccCcCccccCchhHHhhhhccceEeeccccCcceEeccCCCCC
Q 036454           18 ATQLRELHVFHLPKLTKLWNKDPQGKLIFRNLVVVRIFDCQSLKNIFPTSIARSLLRLETLSIKDCGSVEEIVANDGRGN   97 (410)
Q Consensus        18 ~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~   97 (410)
                      ..+++.+++.++ .++.+    |..  ..+++++|+++++ .+..+++..+ .++++|++|+++++. +..+..      
T Consensus        30 ~c~l~~l~~~~~-~l~~l----p~~--~~~~l~~L~L~~n-~i~~~~~~~~-~~l~~L~~L~L~~n~-l~~~~~------   93 (330)
T 1xku_A           30 QCHLRVVQCSDL-GLEKV----PKD--LPPDTALLDLQNN-KITEIKDGDF-KNLKNLHTLILINNK-ISKISP------   93 (330)
T ss_dssp             EEETTEEECTTS-CCCSC----CCS--CCTTCCEEECCSS-CCCCBCTTTT-TTCTTCCEEECCSSC-CCCBCT------
T ss_pred             cCCCeEEEecCC-Ccccc----Ccc--CCCCCeEEECCCC-cCCEeChhhh-ccCCCCCEEECCCCc-CCeeCH------
Confidence            347888888876 34433    443  2478999999988 5666655444 688999999999886 666532      


Q ss_pred             CCcccccCCCccEEeeccCCCccccccCcccCCCCCceEEEEccC----------CccccccEEEeeccCccc--ccccc
Q 036454           98 DAATKFIFPSLTFLRLRDLPDLTTFYSGMHILECPELRKLEVNHV----------DVFANLEELTLSKCIFTT--WRQAQ  165 (410)
Q Consensus        98 ~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~~----------~~l~~L~~L~i~~~~~~~--~~~~~  165 (410)
                        ..+..+++|++|+++++ .++.++...    .++|++|+++++          ..+++|+.|++++|....  ..+..
T Consensus        94 --~~~~~l~~L~~L~Ls~n-~l~~l~~~~----~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~  166 (330)
T 1xku_A           94 --GAFAPLVKLERLYLSKN-QLKELPEKM----PKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGA  166 (330)
T ss_dssp             --TTTTTCTTCCEEECCSS-CCSBCCSSC----CTTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTG
T ss_pred             --HHhcCCCCCCEEECCCC-cCCccChhh----cccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhh
Confidence              15677889999999987 566665543    378999999887          457889999999988754  22222


Q ss_pred             ---cccccEEEEEeCCCccchhhhhhhcccCceEEEeccccccccccchhhccccccCcccEEEeCCcccccccccCCCC
Q 036454          166 ---FHKLKILHFISDGSDFFQVGLLQNIHNLEKLVLSTCEYKKIFSCEEVEEHAEGIAQIKSLKLKKLWLIEEHLWNPDS  242 (410)
Q Consensus       166 ---l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~  242 (410)
                         +++|+.|++....+..++...   .++|+.|++++|.+..+..     ..+..+++|++|+++++.-.  .   ...
T Consensus       167 ~~~l~~L~~L~l~~n~l~~l~~~~---~~~L~~L~l~~n~l~~~~~-----~~~~~l~~L~~L~Ls~n~l~--~---~~~  233 (330)
T 1xku_A          167 FQGMKKLSYIRIADTNITTIPQGL---PPSLTELHLDGNKITKVDA-----ASLKGLNNLAKLGLSFNSIS--A---VDN  233 (330)
T ss_dssp             GGGCTTCCEEECCSSCCCSCCSSC---CTTCSEEECTTSCCCEECT-----GGGTTCTTCCEEECCSSCCC--E---ECT
T ss_pred             ccCCCCcCEEECCCCccccCCccc---cccCCEEECCCCcCCccCH-----HHhcCCCCCCEEECCCCcCc--e---eCh
Confidence               889999999777776666433   3899999999998877643     24667899999999984322  1   123


Q ss_pred             ccccccccceEEEEecccccccccccCccccCccCEEEEcccCCcccccchhhh-----hcCCCccEEEeccCcccc--h
Q 036454          243 KLDSFLQNLEFLEVKKCALSLISLVPSSASFRNLTVLKVCNCWQLISLVTPQTA-----KTLVQLRELRVSECNRLE--E  315 (410)
Q Consensus       243 ~~~~~~~~L~~L~l~~~~~~l~~l~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~-----~~l~~L~~L~l~~c~~l~--~  315 (410)
                      ..+..+++|++|++++|  .++.++..+..+++|++|+++++ .++.++.....     ...+.|+.+++.+++-..  .
T Consensus       234 ~~~~~l~~L~~L~L~~N--~l~~lp~~l~~l~~L~~L~l~~N-~i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~~~~~~i  310 (330)
T 1xku_A          234 GSLANTPHLRELHLNNN--KLVKVPGGLADHKYIQVVYLHNN-NISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEI  310 (330)
T ss_dssp             TTGGGSTTCCEEECCSS--CCSSCCTTTTTCSSCCEEECCSS-CCCCCCTTSSSCSSCCTTSCCCSEEECCSSSSCGGGS
T ss_pred             hhccCCCCCCEEECCCC--cCccCChhhccCCCcCEEECCCC-cCCccChhhcCCcccccccccccceEeecCccccccc
Confidence            35778899999999999  67788888889999999999887 47666542211     235789999999865422  2


Q ss_pred             hccccCCCCccccccccceeecCcC
Q 036454          316 IVANDGDADDEIVFSKLKWLFLESS  340 (410)
Q Consensus       316 ~~~~~~~~~~~~~~~~L~~L~l~~c  340 (410)
                      .+..+..      +++++.++++++
T Consensus       311 ~~~~f~~------~~~l~~l~L~~N  329 (330)
T 1xku_A          311 QPSTFRC------VYVRAAVQLGNY  329 (330)
T ss_dssp             CGGGGTT------CCCGGGEEC---
T ss_pred             Ccccccc------ccceeEEEeccc
Confidence            2344444      788889888764

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=99.83  E-value=5.4e-19  Score=164.19  Aligned_cols=291  Identities=15%  Similarity=0.140  Sum_probs=199.4

Q ss_pred             ccCcccEEEeccCcCccccCchhHHhhhhccceEeeccccCcceEeccCCCCCCCcccccCCCccEEeeccCCCcccccc
Q 036454           45 IFRNLVVVRIFDCQSLKNIFPTSIARSLLRLETLSIKDCGSVEEIVANDGRGNDAATKFIFPSLTFLRLRDLPDLTTFYS  124 (410)
Q Consensus        45 ~l~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~  124 (410)
                      +..+++.++++++ .+..+|..    -.+++++|+++++. +..++.        ..+..+++|++|+++++ .+..+..
T Consensus        29 c~c~l~~l~~~~~-~l~~lp~~----~~~~l~~L~L~~n~-i~~~~~--------~~~~~l~~L~~L~L~~n-~l~~~~~   93 (330)
T 1xku_A           29 CQCHLRVVQCSDL-GLEKVPKD----LPPDTALLDLQNNK-ITEIKD--------GDFKNLKNLHTLILINN-KISKISP   93 (330)
T ss_dssp             CEEETTEEECTTS-CCCSCCCS----CCTTCCEEECCSSC-CCCBCT--------TTTTTCTTCCEEECCSS-CCCCBCT
T ss_pred             CcCCCeEEEecCC-CccccCcc----CCCCCeEEECCCCc-CCEeCh--------hhhccCCCCCEEECCCC-cCCeeCH
Confidence            4558899999887 56666442    34789999999986 776664        25677899999999987 5555533


Q ss_pred             CcccCCCCCceEEEEccCCccccccEEEeeccCcccccccccccccEEEEEeCCCccchhhhhhhcccCceEEEeccccc
Q 036454          125 GMHILECPELRKLEVNHVDVFANLEELTLSKCIFTTWRQAQFHKLKILHFISDGSDFFQVGLLQNIHNLEKLVLSTCEYK  204 (410)
Q Consensus       125 ~~~~~~~~~L~~L~l~~~~~l~~L~~L~i~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~  204 (410)
                      ..+. .+              ++|++|++++|.+..++....++|+.|++....+...+...+.++++|+.|+++++.+.
T Consensus        94 ~~~~-~l--------------~~L~~L~Ls~n~l~~l~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~  158 (330)
T 1xku_A           94 GAFA-PL--------------VKLERLYLSKNQLKELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLK  158 (330)
T ss_dssp             TTTT-TC--------------TTCCEEECCSSCCSBCCSSCCTTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCC
T ss_pred             HHhc-CC--------------CCCCEEECCCCcCCccChhhcccccEEECCCCcccccCHhHhcCCccccEEECCCCcCC
Confidence            3222 33              45555555555555444444678888888777777777777888999999999988765


Q ss_pred             cccccchhhccccccCcccEEEeCCcccccccccCCCCccccccccceEEEEeccccccccc-ccCccccCccCEEEEcc
Q 036454          205 KIFSCEEVEEHAEGIAQIKSLKLKKLWLIEEHLWNPDSKLDSFLQNLEFLEVKKCALSLISL-VPSSASFRNLTVLKVCN  283 (410)
Q Consensus       205 ~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~l~~l-~~~~~~~~~L~~L~l~~  283 (410)
                      ....   ....+..+++|++|+++++.-.  .+   .   ....++|++|++++|  .++.+ +..+..+++|++|++++
T Consensus       159 ~~~~---~~~~~~~l~~L~~L~l~~n~l~--~l---~---~~~~~~L~~L~l~~n--~l~~~~~~~~~~l~~L~~L~Ls~  225 (330)
T 1xku_A          159 SSGI---ENGAFQGMKKLSYIRIADTNIT--TI---P---QGLPPSLTELHLDGN--KITKVDAASLKGLNNLAKLGLSF  225 (330)
T ss_dssp             GGGB---CTTGGGGCTTCCEEECCSSCCC--SC---C---SSCCTTCSEEECTTS--CCCEECTGGGTTCTTCCEEECCS
T ss_pred             ccCc---ChhhccCCCCcCEEECCCCccc--cC---C---ccccccCCEEECCCC--cCCccCHHHhcCCCCCCEEECCC
Confidence            4211   1124567889999999884322  22   1   122378999999998  45554 44567788999999987


Q ss_pred             cCCcccccchhhhhcCCCccEEEeccCcccchhccccCCCCccccccccceeecCcCcccceecCCCcc-----cCCCCc
Q 036454          284 CWQLISLVTPQTAKTLVQLRELRVSECNRLEEIVANDGDADDEIVFSKLKWLFLESSESITSFCSGNYA-----FSFPSL  358 (410)
Q Consensus       284 c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~-----~~~~~L  358 (410)
                      + .+..++. .....+++|++|++++| .++.++..+..      +++|+.|+++++ .++.++.....     ...+.+
T Consensus       226 n-~l~~~~~-~~~~~l~~L~~L~L~~N-~l~~lp~~l~~------l~~L~~L~l~~N-~i~~~~~~~f~~~~~~~~~~~l  295 (330)
T 1xku_A          226 N-SISAVDN-GSLANTPHLRELHLNNN-KLVKVPGGLAD------HKYIQVVYLHNN-NISAIGSNDFCPPGYNTKKASY  295 (330)
T ss_dssp             S-CCCEECT-TTGGGSTTCCEEECCSS-CCSSCCTTTTT------CSSCCEEECCSS-CCCCCCTTSSSCSSCCTTSCCC
T ss_pred             C-cCceeCh-hhccCCCCCCEEECCCC-cCccCChhhcc------CCCcCEEECCCC-cCCccChhhcCCcccccccccc
Confidence            7 4665543 34577889999999986 56677777777      899999999985 47766544321     124788


Q ss_pred             cEEEEecCCCCc--ccCCCCCCCCCcceeEec
Q 036454          359 EDLIVENCPKLN--TFSAGVLKTPRLQAVQNW  388 (410)
Q Consensus       359 ~~L~l~~c~~l~--~~~~~~~~~~~L~~l~~~  388 (410)
                      +.+++.+++...  ..|..+..+++++.++++
T Consensus       296 ~~l~l~~N~~~~~~i~~~~f~~~~~l~~l~L~  327 (330)
T 1xku_A          296 SGVSLFSNPVQYWEIQPSTFRCVYVRAAVQLG  327 (330)
T ss_dssp             SEEECCSSSSCGGGSCGGGGTTCCCGGGEEC-
T ss_pred             cceEeecCcccccccCccccccccceeEEEec
Confidence            889998876532  234455567888888876

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=99.83  E-value=1.6e-19  Score=167.88  Aligned_cols=290  Identities=15%  Similarity=0.133  Sum_probs=201.8

Q ss_pred             ccCcccEEEeccCcCccccCchhHHhhhhccceEeeccccCcceEeccCCCCCCCcccccCCCccEEeeccCCCcccccc
Q 036454           45 IFRNLVVVRIFDCQSLKNIFPTSIARSLLRLETLSIKDCGSVEEIVANDGRGNDAATKFIFPSLTFLRLRDLPDLTTFYS  124 (410)
Q Consensus        45 ~l~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~  124 (410)
                      +..+++.++++++ .++.+|..    -.++|++|+++++. +..++.        ..+..+++|++|+++++ .+..+..
T Consensus        31 c~c~l~~l~~~~~-~l~~ip~~----~~~~l~~L~l~~n~-i~~~~~--------~~~~~l~~L~~L~L~~n-~l~~~~~   95 (332)
T 2ft3_A           31 CHCHLRVVQCSDL-GLKAVPKE----ISPDTTLLDLQNND-ISELRK--------DDFKGLQHLYALVLVNN-KISKIHE   95 (332)
T ss_dssp             CEEETTEEECCSS-CCSSCCSC----CCTTCCEEECCSSC-CCEECT--------TTTTTCTTCCEEECCSS-CCCEECG
T ss_pred             CcccCCEEECCCC-CccccCCC----CCCCCeEEECCCCc-CCccCH--------hHhhCCCCCcEEECCCC-ccCccCH
Confidence            4457999999888 56666542    24789999999986 777754        25678899999999988 5555533


Q ss_pred             CcccCCCCCceEEEEccCCccccccEEEeeccCcccccccccccccEEEEEeCCCccchhhhhhhcccCceEEEeccccc
Q 036454          125 GMHILECPELRKLEVNHVDVFANLEELTLSKCIFTTWRQAQFHKLKILHFISDGSDFFQVGLLQNIHNLEKLVLSTCEYK  204 (410)
Q Consensus       125 ~~~~~~~~~L~~L~l~~~~~l~~L~~L~i~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~  204 (410)
                      ..+. .+              ++|++|++++|.+..++....++|++|++....+...+...+.++++|+.|+++++.+.
T Consensus        96 ~~~~-~l--------------~~L~~L~L~~n~l~~l~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~  160 (332)
T 2ft3_A           96 KAFS-PL--------------RKLQKLYISKNHLVEIPPNLPSSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLE  160 (332)
T ss_dssp             GGST-TC--------------TTCCEEECCSSCCCSCCSSCCTTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCB
T ss_pred             hHhh-Cc--------------CCCCEEECCCCcCCccCccccccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccc
Confidence            3322 34              45555555555555444444578888888777777777677788999999999998775


Q ss_pred             cccccchhhccccccCcccEEEeCCcccccccccCCCCccccccccceEEEEecccccccccc-cCccccCccCEEEEcc
Q 036454          205 KIFSCEEVEEHAEGIAQIKSLKLKKLWLIEEHLWNPDSKLDSFLQNLEFLEVKKCALSLISLV-PSSASFRNLTVLKVCN  283 (410)
Q Consensus       205 ~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~l~~l~-~~~~~~~~L~~L~l~~  283 (410)
                      ....   ....+..+ +|++|+++++.-.  .+   .   ....++|++|++++|  .++.++ ..+..+++|++|++++
T Consensus       161 ~~~~---~~~~~~~l-~L~~L~l~~n~l~--~l---~---~~~~~~L~~L~l~~n--~i~~~~~~~l~~l~~L~~L~L~~  226 (332)
T 2ft3_A          161 NSGF---EPGAFDGL-KLNYLRISEAKLT--GI---P---KDLPETLNELHLDHN--KIQAIELEDLLRYSKLYRLGLGH  226 (332)
T ss_dssp             GGGS---CTTSSCSC-CCSCCBCCSSBCS--SC---C---SSSCSSCSCCBCCSS--CCCCCCTTSSTTCTTCSCCBCCS
T ss_pred             cCCC---CcccccCC-ccCEEECcCCCCC--cc---C---ccccCCCCEEECCCC--cCCccCHHHhcCCCCCCEEECCC
Confidence            4211   11123444 8999999884322  22   1   122379999999998  455554 4567889999999987


Q ss_pred             cCCcccccchhhhhcCCCccEEEeccCcccchhccccCCCCccccccccceeecCcCcccceecCCCccc-----CCCCc
Q 036454          284 CWQLISLVTPQTAKTLVQLRELRVSECNRLEEIVANDGDADDEIVFSKLKWLFLESSESITSFCSGNYAF-----SFPSL  358 (410)
Q Consensus       284 c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~-----~~~~L  358 (410)
                      + .+..++. .....+++|++|++++| .++.++..+..      +++|+.|+++++ .++.++......     ..++|
T Consensus       227 N-~l~~~~~-~~~~~l~~L~~L~L~~N-~l~~lp~~l~~------l~~L~~L~l~~N-~l~~~~~~~~~~~~~~~~~~~l  296 (332)
T 2ft3_A          227 N-QIRMIEN-GSLSFLPTLRELHLDNN-KLSRVPAGLPD------LKLLQVVYLHTN-NITKVGVNDFCPVGFGVKRAYY  296 (332)
T ss_dssp             S-CCCCCCT-TGGGGCTTCCEEECCSS-CCCBCCTTGGG------CTTCCEEECCSS-CCCBCCTTSSSCSSCCSSSCCB
T ss_pred             C-cCCcCCh-hHhhCCCCCCEEECCCC-cCeecChhhhc------CccCCEEECCCC-CCCccChhHccccccccccccc
Confidence            7 4666543 34578899999999986 66677777777      899999999985 577766543221     25779


Q ss_pred             cEEEEecCCCC--cccCCCCCCCCCcceeEec
Q 036454          359 EDLIVENCPKL--NTFSAGVLKTPRLQAVQNW  388 (410)
Q Consensus       359 ~~L~l~~c~~l--~~~~~~~~~~~~L~~l~~~  388 (410)
                      +.+++.+++..  ...|..+..+++|+.++++
T Consensus       297 ~~L~l~~N~~~~~~~~~~~~~~l~~L~~l~l~  328 (332)
T 2ft3_A          297 NGISLFNNPVPYWEVQPATFRCVTDRLAIQFG  328 (332)
T ss_dssp             SEEECCSSSSCGGGSCGGGGTTBCCSTTEEC-
T ss_pred             cceEeecCcccccccCcccccccchhhhhhcc
Confidence            99999998764  3344556678899999886

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=99.83  E-value=4e-19  Score=164.77  Aligned_cols=85  Identities=21%  Similarity=0.308  Sum_probs=43.7

Q ss_pred             ccccccceEEEEecccccccccccCccccCccCEEEEcccCCcccccchhhhhcCCCccEEEeccCcccchhccccCCCC
Q 036454          245 DSFLQNLEFLEVKKCALSLISLVPSSASFRNLTVLKVCNCWQLISLVTPQTAKTLVQLRELRVSECNRLEEIVANDGDAD  324 (410)
Q Consensus       245 ~~~~~~L~~L~l~~~~~~l~~l~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~  324 (410)
                      +..+++|++|++++|. ....++..++.+++|++|++++|..+..++  .....+++|++|++++|.....+|..++.  
T Consensus       225 l~~l~~L~~L~Ls~n~-~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p--~~~~~l~~L~~L~L~~n~~~~~iP~~l~~--  299 (328)
T 4fcg_A          225 IHHLPKLEELDLRGCT-ALRNYPPIFGGRAPLKRLILKDCSNLLTLP--LDIHRLTQLEKLDLRGCVNLSRLPSLIAQ--  299 (328)
T ss_dssp             GGGCTTCCEEECTTCT-TCCBCCCCTTCCCCCCEEECTTCTTCCBCC--TTGGGCTTCCEEECTTCTTCCCCCGGGGG--
T ss_pred             hccCCCCCEEECcCCc-chhhhHHHhcCCCCCCEEECCCCCchhhcc--hhhhcCCCCCEEeCCCCCchhhccHHHhh--
Confidence            3444555555555544 444444444555555555555554444443  22355555555555555555555555555  


Q ss_pred             ccccccccceeecC
Q 036454          325 DEIVFSKLKWLFLE  338 (410)
Q Consensus       325 ~~~~~~~L~~L~l~  338 (410)
                          +++|+.+.+.
T Consensus       300 ----L~~L~~l~l~  309 (328)
T 4fcg_A          300 ----LPANCIILVP  309 (328)
T ss_dssp             ----SCTTCEEECC
T ss_pred             ----ccCceEEeCC
Confidence                5555555544

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=99.83  E-value=1.7e-18  Score=174.92  Aligned_cols=110  Identities=16%  Similarity=0.115  Sum_probs=75.9

Q ss_pred             cccCccCEEEEcccCCcccccchhhhhcCCCccEEEeccCcccch-hccccCCCCccccccccceeecCcCcccceecCC
Q 036454          271 ASFRNLTVLKVCNCWQLISLVTPQTAKTLVQLRELRVSECNRLEE-IVANDGDADDEIVFSKLKWLFLESSESITSFCSG  349 (410)
Q Consensus       271 ~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~-~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~  349 (410)
                      ..+++++.++++.+ .+..... .....+++|++|+++++..... .+..+..      +++|+.|+++++ .++.+...
T Consensus       442 ~~l~~l~~l~ls~n-~l~~~~~-~~~~~~~~L~~L~Ls~N~~~~~~~~~~~~~------l~~L~~L~Ls~N-~L~~l~~~  512 (635)
T 4g8a_A          442 LSLRNLIYLDISHT-HTRVAFN-GIFNGLSSLEVLKMAGNSFQENFLPDIFTE------LRNLTFLDLSQC-QLEQLSPT  512 (635)
T ss_dssp             TTCTTCCEEECTTS-CCEECCT-TTTTTCTTCCEEECTTCEEGGGEECSCCTT------CTTCCEEECTTS-CCCEECTT
T ss_pred             cccccccccccccc-ccccccc-cccccchhhhhhhhhhcccccccCchhhhh------ccccCEEECCCC-ccCCcChH
Confidence            34455556665444 2333321 3446778899999988765544 3445555      899999999996 57777655


Q ss_pred             CcccCCCCccEEEEecCCCCcccCC-CCCCCCCcceeEecccc
Q 036454          350 NYAFSFPSLEDLIVENCPKLNTFSA-GVLKTPRLQAVQNWELG  391 (410)
Q Consensus       350 ~~~~~~~~L~~L~l~~c~~l~~~~~-~~~~~~~L~~l~~~~~~  391 (410)
                       .+..+++|++|+++++ ++..++. .+..+++|++|++++|.
T Consensus       513 -~f~~l~~L~~L~Ls~N-~l~~l~~~~~~~l~~L~~L~Ls~N~  553 (635)
T 4g8a_A          513 -AFNSLSSLQVLNMSHN-NFFSLDTFPYKCLNSLQVLDYSLNH  553 (635)
T ss_dssp             -TTTTCTTCCEEECTTS-CCCBCCCGGGTTCTTCCEEECTTSC
T ss_pred             -HHcCCCCCCEEECCCC-cCCCCChhHHhCCCCCCEEECCCCc
Confidence             3557999999999887 5666654 45578999999998554

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=99.82  E-value=7.1e-21  Score=191.01  Aligned_cols=137  Identities=17%  Similarity=0.191  Sum_probs=75.4

Q ss_pred             cccccceEEEEecccccccc-cccCcc-ccCccCEEEEcc---cCCcccccc----hhhhhcCCCccEEEeccCcc-cch
Q 036454          246 SFLQNLEFLEVKKCALSLIS-LVPSSA-SFRNLTVLKVCN---CWQLISLVT----PQTAKTLVQLRELRVSECNR-LEE  315 (410)
Q Consensus       246 ~~~~~L~~L~l~~~~~~l~~-l~~~~~-~~~~L~~L~l~~---c~~l~~~~~----~~~~~~l~~L~~L~l~~c~~-l~~  315 (410)
                      ..+++|++|++..+  .++. .+..++ .+++|++|++++   |..++..+.    ......+++|++|+++.|.. +..
T Consensus       375 ~~~~~L~~L~l~~~--~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~  452 (592)
T 3ogk_B          375 QGCQELEYMAVYVS--DITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTD  452 (592)
T ss_dssp             HHCTTCSEEEEEES--CCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCCCHHHHHHHHHHCTTCCEEEEECCGGGCCH
T ss_pred             hhCccCeEEEeecC--CccHHHHHHHHhhCCCCcEEEEeecCCCccccCchHHHHHHHHHHhCCCCCEEEEecCCCCccH
Confidence            34566666666433  2322 111122 366677777763   445554321    12235577777777766543 211


Q ss_pred             -hccccCCCCccccccccceeecCcCcccceecCCCcccCCCCccEEEEecCCCCcc--cCCCCCCCCCcceeEecccc
Q 036454          316 -IVANDGDADDEIVFSKLKWLFLESSESITSFCSGNYAFSFPSLEDLIVENCPKLNT--FSAGVLKTPRLQAVQNWELG  391 (410)
Q Consensus       316 -~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~l~~c~~l~~--~~~~~~~~~~L~~l~~~~~~  391 (410)
                       .+..++     ..+++|+.|++++|. +++.........+++|++|++++|+ +..  ++.....+++|++|+++++.
T Consensus       453 ~~~~~~~-----~~~~~L~~L~L~~n~-l~~~~~~~~~~~~~~L~~L~l~~n~-l~~~~~~~~~~~l~~L~~L~ls~n~  524 (592)
T 3ogk_B          453 LGLSYIG-----QYSPNVRWMLLGYVG-ESDEGLMEFSRGCPNLQKLEMRGCC-FSERAIAAAVTKLPSLRYLWVQGYR  524 (592)
T ss_dssp             HHHHHHH-----HSCTTCCEEEECSCC-SSHHHHHHHHTCCTTCCEEEEESCC-CBHHHHHHHHHHCSSCCEEEEESCB
T ss_pred             HHHHHHH-----HhCccceEeeccCCC-CCHHHHHHHHhcCcccCeeeccCCC-CcHHHHHHHHHhcCccCeeECcCCc
Confidence             111111     126778888888764 5443222233468999999999997 432  33333357889999998554

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=99.81  E-value=5e-21  Score=192.15  Aligned_cols=135  Identities=16%  Similarity=0.087  Sum_probs=67.4

Q ss_pred             ccccceEEEEeccccccccc-ccCc-cccCccCEEEEc-----ccCCcccccch----hhhhcCCCccEEEeccCcccch
Q 036454          247 FLQNLEFLEVKKCALSLISL-VPSS-ASFRNLTVLKVC-----NCWQLISLVTP----QTAKTLVQLRELRVSECNRLEE  315 (410)
Q Consensus       247 ~~~~L~~L~l~~~~~~l~~l-~~~~-~~~~~L~~L~l~-----~c~~l~~~~~~----~~~~~l~~L~~L~l~~c~~l~~  315 (410)
                      .+++|++|.+..+  .++.. ...+ ..+++|++|+++     +|.+++..+..    .....+++|++|++++  .+.+
T Consensus       370 ~~~~L~~L~~~~~--~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~l~~~~~~L~~L~L~~--~l~~  445 (594)
T 2p1m_B          370 GCPKLESVLYFCR--QMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSG--LLTD  445 (594)
T ss_dssp             HCTTCCEEEEEES--CCCHHHHHHHHHHCTTCCEEEEEESSTTCCCTTTCCCTHHHHHHHHHHCTTCCEEECCS--SCCH
T ss_pred             hchhHHHHHHhcC--CcCHHHHHHHHhhCCCcceeEeecccCCCcccccCCchhhHHHHHHhhCCCccEEeecC--cccH
Confidence            3566666654443  33221 1111 246677777776     45555533221    1235566777777754  2222


Q ss_pred             h-ccccCCCCccccccccceeecCcCcccceecCCCcccCCCCccEEEEecCCCCcc-cCCCCCCCCCcceeEecccc
Q 036454          316 I-VANDGDADDEIVFSKLKWLFLESSESITSFCSGNYAFSFPSLEDLIVENCPKLNT-FSAGVLKTPRLQAVQNWELG  391 (410)
Q Consensus       316 ~-~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~l~~c~~l~~-~~~~~~~~~~L~~l~~~~~~  391 (410)
                      . +..++.     .+++|+.|++++|. +++.........+++|++|++++|+.-.. +......+++|++|+++++.
T Consensus       446 ~~~~~l~~-----~~~~L~~L~L~~~~-i~~~~~~~l~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~~~  517 (594)
T 2p1m_B          446 KVFEYIGT-----YAKKMEMLSVAFAG-DSDLGMHHVLSGCDSLRKLEIRDCPFGDKALLANASKLETMRSLWMSSCS  517 (594)
T ss_dssp             HHHHHHHH-----HCTTCCEEEEESCC-SSHHHHHHHHHHCTTCCEEEEESCSCCHHHHHHTGGGGGGSSEEEEESSC
T ss_pred             HHHHHHHH-----hchhccEeeccCCC-CcHHHHHHHHhcCCCcCEEECcCCCCcHHHHHHHHHhCCCCCEEeeeCCC
Confidence            1 111110     15667777777654 43332222223477777777777765211 11222346777777777543

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=99.81  E-value=3.6e-21  Score=187.17  Aligned_cols=362  Identities=16%  Similarity=0.104  Sum_probs=225.4

Q ss_pred             cccccccCcccc----ccccccCCcEEEecCccccc-cccccCCccccccCcccEEEeccCcCccccCchhHHhhhh---
Q 036454            2 IFDLQEVNSEET----HSGAATQLRELHVFHLPKLT-KLWNKDPQGKLIFRNLVVVRIFDCQSLKNIFPTSIARSLL---   73 (410)
Q Consensus         2 ~~~~~~~~~~~~----~~~~~~~L~~L~l~~~~~l~-~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~l~---   73 (410)
                      .+|++.....+.    .+..+++|++|++++|. ++ ..+...+..+..+++|++|+++++ .+.+..+..++..++   
T Consensus         7 ~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~-l~~~~~~~l~~~l~~~~~L~~L~Ls~n-~l~~~~~~~l~~~l~~~~   84 (461)
T 1z7x_W            7 SLDIQCEELSDARWAELLPLLQQCQVVRLDDCG-LTEARCKDISSALRVNPALAELNLRSN-ELGDVGVHCVLQGLQTPS   84 (461)
T ss_dssp             EEEEESCCCCHHHHHHHHHHHTTCSEEEEESSC-CCHHHHHHHHHHHHTCTTCCEEECTTC-CCHHHHHHHHHHTTCSTT
T ss_pred             ehhhhhcccCchhHHHHHhhcCCccEEEccCCC-CCHHHHHHHHHHHHhCCCcCEEeCCCC-cCChHHHHHHHHHHhhCC
Confidence            356666654432    26678999999999985 43 111122444567799999999988 455544444555666   


Q ss_pred             -ccceEeeccccCcce-----EeccCCCCCCCcccccCCCccEEeeccCCCccccccC----cccCCCCCceEEEEccC-
Q 036454           74 -RLETLSIKDCGSVEE-----IVANDGRGNDAATKFIFPSLTFLRLRDLPDLTTFYSG----MHILECPELRKLEVNHV-  142 (410)
Q Consensus        74 -~L~~L~l~~~~~l~~-----~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~----~~~~~~~~L~~L~l~~~-  142 (410)
                       +|++|++++|. +..     ++.         .+..+++|++|+++++. +.+....    ......++|++|++++| 
T Consensus        85 ~~L~~L~L~~n~-i~~~~~~~l~~---------~l~~~~~L~~L~Ls~n~-i~~~~~~~l~~~l~~~~~~L~~L~L~~n~  153 (461)
T 1z7x_W           85 CKIQKLSLQNCC-LTGAGCGVLSS---------TLRTLPTLQELHLSDNL-LGDAGLQLLCEGLLDPQCRLEKLQLEYCS  153 (461)
T ss_dssp             CCCCEEECTTSC-CBGGGHHHHHH---------HTTSCTTCCEEECCSSB-CHHHHHHHHHHHHTSTTCCCCEEECTTSC
T ss_pred             CceeEEEccCCC-CCHHHHHHHHH---------HHccCCceeEEECCCCc-CchHHHHHHHHHHhcCCCcceEEECCCCC
Confidence             69999999986 552     233         56678999999999984 4432111    11123568999999988 


Q ss_pred             -------------CccccccEEEeeccCcccccccc--------cccccEEEEEeCCCccch----hhhhhhcccCceEE
Q 036454          143 -------------DVFANLEELTLSKCIFTTWRQAQ--------FHKLKILHFISDGSDFFQ----VGLLQNIHNLEKLV  197 (410)
Q Consensus       143 -------------~~l~~L~~L~i~~~~~~~~~~~~--------l~~L~~L~l~~~~~~~~~----~~~l~~l~~L~~L~  197 (410)
                                   ..+++|++|++++|.+.......        .++|+.|++....+....    ...+..+++|+.|+
T Consensus       154 l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~  233 (461)
T 1z7x_W          154 LSAASCEPLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELA  233 (461)
T ss_dssp             CBGGGHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEE
T ss_pred             CCHHHHHHHHHHHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEe
Confidence                         23478999999998875433222        348999999555555432    24467789999999


Q ss_pred             EeccccccccccchhhccccccCcccEEEeCCcccccccccCCCCccccccccceEEEEeccccccccc-----ccCc-c
Q 036454          198 LSTCEYKKIFSCEEVEEHAEGIAQIKSLKLKKLWLIEEHLWNPDSKLDSFLQNLEFLEVKKCALSLISL-----VPSS-A  271 (410)
Q Consensus       198 l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~l~~l-----~~~~-~  271 (410)
                      +++|.+.......+.......+++|++|++++|.-. ..-...-...+..+++|++|++++|.  +.+.     ...+ .
T Consensus       234 Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~l~-~~~~~~l~~~l~~~~~L~~L~Ls~n~--i~~~~~~~l~~~l~~  310 (461)
T 1z7x_W          234 LGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGIT-AKGCGDLCRVLRAKESLKELSLAGNE--LGDEGARLLCETLLE  310 (461)
T ss_dssp             CCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCC-HHHHHHHHHHHHHCTTCCEEECTTCC--CHHHHHHHHHHHHTS
T ss_pred             ccCCcCChHHHHHHHHHHhcCCCCceEEECcCCCCC-HHHHHHHHHHHhhCCCcceEECCCCC--CchHHHHHHHHHhcc
Confidence            999876543211111222335789999999986332 11000002235568999999999984  3321     1111 1


Q ss_pred             ccCccCEEEEcccCCcccccc---hhhhhcCCCccEEEeccCcccchh-ccccCCCCccccccccceeecCcCcccce--
Q 036454          272 SFRNLTVLKVCNCWQLISLVT---PQTAKTLVQLRELRVSECNRLEEI-VANDGDADDEIVFSKLKWLFLESSESITS--  345 (410)
Q Consensus       272 ~~~~L~~L~l~~c~~l~~~~~---~~~~~~l~~L~~L~l~~c~~l~~~-~~~~~~~~~~~~~~~L~~L~l~~c~~l~~--  345 (410)
                      ..++|++|++++|. +.....   ......+++|++|++++| .+.+. +..+... .....++|++|++++|. +++  
T Consensus       311 ~~~~L~~L~L~~n~-l~~~~~~~l~~~l~~~~~L~~L~Ls~n-~i~~~~~~~l~~~-l~~~~~~L~~L~L~~n~-i~~~~  386 (461)
T 1z7x_W          311 PGCQLESLWVKSCS-FTAACCSHFSSVLAQNRFLLELQISNN-RLEDAGVRELCQG-LGQPGSVLRVLWLADCD-VSDSS  386 (461)
T ss_dssp             TTCCCCEEECTTSC-CBGGGHHHHHHHHHHCSSCCEEECCSS-BCHHHHHHHHHHH-HTSTTCCCCEEECTTSC-CCHHH
T ss_pred             CCccceeeEcCCCC-CchHHHHHHHHHHhhCCCccEEEccCC-ccccccHHHHHHH-HcCCCCceEEEECCCCC-CChhh
Confidence            23689999999884 544321   134567799999999987 34332 1111100 00015689999999974 553  


Q ss_pred             ---ecCCCcccCCCCccEEEEecCCCCcc--------cCCCCCCCCCcceeEec
Q 036454          346 ---FCSGNYAFSFPSLEDLIVENCPKLNT--------FSAGVLKTPRLQAVQNW  388 (410)
Q Consensus       346 ---~~~~~~~~~~~~L~~L~l~~c~~l~~--------~~~~~~~~~~L~~l~~~  388 (410)
                         ++.  ....+++|++|++++|+--..        +|.   ...+|+.+++.
T Consensus       387 ~~~l~~--~l~~~~~L~~L~l~~N~i~~~~~~~l~~~l~~---~~~~L~~L~~~  435 (461)
T 1z7x_W          387 CSSLAA--TLLANHSLRELDLSNNCLGDAGILQLVESVRQ---PGCLLEQLVLY  435 (461)
T ss_dssp             HHHHHH--HHHHCCCCCEEECCSSSCCHHHHHHHHHHHTS---TTCCCCEEECT
T ss_pred             HHHHHH--HHHhCCCccEEECCCCCCCHHHHHHHHHHhcc---CCcchhheeec
Confidence               222  223589999999998843211        222   23467777775

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=99.80  E-value=6.5e-19  Score=165.22  Aligned_cols=264  Identities=17%  Similarity=0.159  Sum_probs=143.8

Q ss_pred             CccccccccccCCcEEEecCccccccccccCCccccccCcccEEEeccCcCccccCchhHHhhhhccceEeeccccCcce
Q 036454            9 NSEETHSGAATQLRELHVFHLPKLTKLWNKDPQGKLIFRNLVVVRIFDCQSLKNIFPTSIARSLLRLETLSIKDCGSVEE   88 (410)
Q Consensus         9 ~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~   88 (410)
                      ...+.+.+..++|++|+++++ .++.+.   +..+..+++|++|+++++ .+..+++..+ .++++|++|+++++. +..
T Consensus        42 ~l~~iP~~~~~~L~~L~l~~n-~i~~~~---~~~~~~l~~L~~L~L~~n-~l~~~~~~~~-~~l~~L~~L~Ls~n~-l~~  114 (353)
T 2z80_A           42 SLNSIPSGLTEAVKSLDLSNN-RITYIS---NSDLQRCVNLQALVLTSN-GINTIEEDSF-SSLGSLEHLDLSYNY-LSN  114 (353)
T ss_dssp             TCSSCCTTCCTTCCEEECTTS-CCCEEC---TTTTTTCTTCCEEECTTS-CCCEECTTTT-TTCTTCCEEECCSSC-CSS
T ss_pred             CcccccccccccCcEEECCCC-cCcccC---HHHhccCCCCCEEECCCC-ccCccCHhhc-CCCCCCCEEECCCCc-CCc
Confidence            333444444567788888776 344331   234567778888888777 5555544333 577778888887775 665


Q ss_pred             EeccCCCCCCCcccccCCCccEEeeccCCCcccccc-CcccCCCCCceEEEEccCCccccccEEEeeccCcccccccc--
Q 036454           89 IVANDGRGNDAATKFIFPSLTFLRLRDLPDLTTFYS-GMHILECPELRKLEVNHVDVFANLEELTLSKCIFTTWRQAQ--  165 (410)
Q Consensus        89 ~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~-~~~~~~~~~L~~L~l~~~~~l~~L~~L~i~~~~~~~~~~~~--  165 (410)
                      ++.        ..+..+++|++|+++++ .+..++. ..+ ..+++|++|+++++   .          ......+..  
T Consensus       115 ~~~--------~~~~~l~~L~~L~L~~n-~l~~l~~~~~~-~~l~~L~~L~l~~n---~----------~~~~~~~~~~~  171 (353)
T 2z80_A          115 LSS--------SWFKPLSSLTFLNLLGN-PYKTLGETSLF-SHLTKLQILRVGNM---D----------TFTKIQRKDFA  171 (353)
T ss_dssp             CCH--------HHHTTCTTCSEEECTTC-CCSSSCSSCSC-TTCTTCCEEEEEES---S----------SCCEECTTTTT
T ss_pred             CCH--------hHhCCCccCCEEECCCC-CCcccCchhhh-ccCCCCcEEECCCC---c----------cccccCHHHcc
Confidence            554        12556777888888776 4555444 222 24555555555444   0          122222211  


Q ss_pred             -cccccEEEEEeCCCccchhhhhhhcccCceEEEeccccccccccchhhccccccCcccEEEeCCcccccccccCCCCcc
Q 036454          166 -FHKLKILHFISDGSDFFQVGLLQNIHNLEKLVLSTCEYKKIFSCEEVEEHAEGIAQIKSLKLKKLWLIEEHLWNPDSKL  244 (410)
Q Consensus       166 -l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~  244 (410)
                       +++|+.|++............+..+++|+.|+++++.+..+..     .....+++|+.|+++++.-.  .+.......
T Consensus       172 ~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~-----~~~~~~~~L~~L~L~~n~l~--~~~~~~l~~  244 (353)
T 2z80_A          172 GLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHILLLE-----IFVDVTSSVECLELRDTDLD--TFHFSELST  244 (353)
T ss_dssp             TCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSCSTTHHH-----HHHHHTTTEEEEEEESCBCT--TCCCC----
T ss_pred             CCCCCCEEECCCCCcCccCHHHHhccccCCeecCCCCccccchh-----hhhhhcccccEEECCCCccc--ccccccccc
Confidence             5566666665555554444455666677777776666544322     11233566777777663221  110011111


Q ss_pred             ccccccceEEEEeccc---ccccccccCccccCccCEEEEcccCCcccccchhhhhcCCCccEEEeccCc
Q 036454          245 DSFLQNLEFLEVKKCA---LSLISLVPSSASFRNLTVLKVCNCWQLISLVTPQTAKTLVQLRELRVSECN  311 (410)
Q Consensus       245 ~~~~~~L~~L~l~~~~---~~l~~l~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~  311 (410)
                      ....+.++.+++.++.   ..+..++..+..+++|++|+++++ +++.++. .....+++|++|++++++
T Consensus       245 ~~~~~~l~~l~L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N-~l~~i~~-~~~~~l~~L~~L~L~~N~  312 (353)
T 2z80_A          245 GETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRN-QLKSVPD-GIFDRLTSLQKIWLHTNP  312 (353)
T ss_dssp             --CCCCCCEEEEESCBCCHHHHHHHHHHHHTCTTCCEEECCSS-CCCCCCT-TTTTTCTTCCEEECCSSC
T ss_pred             ccccchhhccccccccccCcchhhhHHHHhcccCCCEEECCCC-CCCccCH-HHHhcCCCCCEEEeeCCC
Confidence            2334556666666653   012234445566777888888766 4665543 223667788888887753

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=99.80  E-value=3.9e-21  Score=186.91  Aligned_cols=347  Identities=18%  Similarity=0.147  Sum_probs=223.8

Q ss_pred             ccCCcEEEecCccccc-cccccCCccccccCcccEEEeccCcCccccCc---hhHHhhhhccceEeeccccCcceEeccC
Q 036454           18 ATQLRELHVFHLPKLT-KLWNKDPQGKLIFRNLVVVRIFDCQSLKNIFP---TSIARSLLRLETLSIKDCGSVEEIVAND   93 (410)
Q Consensus        18 ~~~L~~L~l~~~~~l~-~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~---~~~~~~l~~L~~L~l~~~~~l~~~~~~~   93 (410)
                      .++|++|+++++. ++ ..|   ...+..+++|++|++++|. +.....   ......+++|++|+++++. +.......
T Consensus         2 ~~~l~~L~Ls~~~-l~~~~~---~~~~~~~~~L~~L~L~~~~-l~~~~~~~l~~~l~~~~~L~~L~Ls~n~-l~~~~~~~   75 (461)
T 1z7x_W            2 SLDIQSLDIQCEE-LSDARW---AELLPLLQQCQVVRLDDCG-LTEARCKDISSALRVNPALAELNLRSNE-LGDVGVHC   75 (461)
T ss_dssp             CEEEEEEEEESCC-CCHHHH---HHHHHHHTTCSEEEEESSC-CCHHHHHHHHHHHHTCTTCCEEECTTCC-CHHHHHHH
T ss_pred             Cccceehhhhhcc-cCchhH---HHHHhhcCCccEEEccCCC-CCHHHHHHHHHHHHhCCCcCEEeCCCCc-CChHHHHH
Confidence            4678999998874 33 222   2224589999999999994 443211   1223567999999999986 54422100


Q ss_pred             CCCCCCcccccCC----CccEEeeccCCCccccc----cCcccCCCCCceEEEEccC---------------CccccccE
Q 036454           94 GRGNDAATKFIFP----SLTFLRLRDLPDLTTFY----SGMHILECPELRKLEVNHV---------------DVFANLEE  150 (410)
Q Consensus        94 ~~~~~~~~~~~l~----~L~~L~l~~~~~l~~~~----~~~~~~~~~~L~~L~l~~~---------------~~l~~L~~  150 (410)
                             ....++    +|++|+++++ .+.+..    ...+ ..+++|++|+++++               ...++|++
T Consensus        76 -------l~~~l~~~~~~L~~L~L~~n-~i~~~~~~~l~~~l-~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~  146 (461)
T 1z7x_W           76 -------VLQGLQTPSCKIQKLSLQNC-CLTGAGCGVLSSTL-RTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEK  146 (461)
T ss_dssp             -------HHHTTCSTTCCCCEEECTTS-CCBGGGHHHHHHHT-TSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCE
T ss_pred             -------HHHHHhhCCCceeEEEccCC-CCCHHHHHHHHHHH-ccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceE
Confidence                   122233    7999999998 454311    2222 36899999999998               12347999


Q ss_pred             EEeeccCcccccccc-------cccccEEEEEeCCCccchhhhhh-----hcccCceEEEeccccccccccchhhccccc
Q 036454          151 LTLSKCIFTTWRQAQ-------FHKLKILHFISDGSDFFQVGLLQ-----NIHNLEKLVLSTCEYKKIFSCEEVEEHAEG  218 (410)
Q Consensus       151 L~i~~~~~~~~~~~~-------l~~L~~L~l~~~~~~~~~~~~l~-----~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~  218 (410)
                      |++++|.+.......       +++|+.|+++...+.......+.     ..++|+.|++++|.+...... ..+..+..
T Consensus       147 L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~-~l~~~l~~  225 (461)
T 1z7x_W          147 LQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCR-DLCGIVAS  225 (461)
T ss_dssp             EECTTSCCBGGGHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHH-HHHHHHHH
T ss_pred             EECCCCCCCHHHHHHHHHHHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHH-HHHHHHHh
Confidence            999999876543211       68999999966556554433333     256999999999976653110 01113456


Q ss_pred             cCcccEEEeCCcccccccccCCCCccccccccceEEEEecccccccc-----cccCccccCccCEEEEcccCCcccccch
Q 036454          219 IAQIKSLKLKKLWLIEEHLWNPDSKLDSFLQNLEFLEVKKCALSLIS-----LVPSSASFRNLTVLKVCNCWQLISLVTP  293 (410)
Q Consensus       219 l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~l~~-----l~~~~~~~~~L~~L~l~~c~~l~~~~~~  293 (410)
                      +++|++|+++++.-.+.............+++|++|++++|  .++.     ++..+..+++|++|+++++ .+......
T Consensus       226 ~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n--~l~~~~~~~l~~~l~~~~~L~~L~Ls~n-~i~~~~~~  302 (461)
T 1z7x_W          226 KASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWEC--GITAKGCGDLCRVLRAKESLKELSLAGN-ELGDEGAR  302 (461)
T ss_dssp             CTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTS--CCCHHHHHHHHHHHHHCTTCCEEECTTC-CCHHHHHH
T ss_pred             CCCccEEeccCCcCChHHHHHHHHHHhcCCCCceEEECcCC--CCCHHHHHHHHHHHhhCCCcceEECCCC-CCchHHHH
Confidence            79999999998642200000000011235789999999999  4544     4555566899999999887 45443221


Q ss_pred             hhh----hcCCCccEEEeccCcccch----hccccCCCCccccccccceeecCcCcccceecCCCcc----cCCCCccEE
Q 036454          294 QTA----KTLVQLRELRVSECNRLEE----IVANDGDADDEIVFSKLKWLFLESSESITSFCSGNYA----FSFPSLEDL  361 (410)
Q Consensus       294 ~~~----~~l~~L~~L~l~~c~~l~~----~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~----~~~~~L~~L  361 (410)
                      ...    ...++|++|++++|.--..    ++..+..      +++|+.|+++++ .+++.......    ...++|++|
T Consensus       303 ~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~------~~~L~~L~Ls~n-~i~~~~~~~l~~~l~~~~~~L~~L  375 (461)
T 1z7x_W          303 LLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQ------NRFLLELQISNN-RLEDAGVRELCQGLGQPGSVLRVL  375 (461)
T ss_dssp             HHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHH------CSSCCEEECCSS-BCHHHHHHHHHHHHTSTTCCCCEE
T ss_pred             HHHHHhccCCccceeeEcCCCCCchHHHHHHHHHHhh------CCCccEEEccCC-ccccccHHHHHHHHcCCCCceEEE
Confidence            111    2336999999999853222    3333333      699999999997 46654322111    126799999


Q ss_pred             EEecCCCCc-----ccCCCCCCCCCcceeEecccc
Q 036454          362 IVENCPKLN-----TFSAGVLKTPRLQAVQNWELG  391 (410)
Q Consensus       362 ~l~~c~~l~-----~~~~~~~~~~~L~~l~~~~~~  391 (410)
                      ++++| .+.     .++..+...++|++++++++.
T Consensus       376 ~L~~n-~i~~~~~~~l~~~l~~~~~L~~L~l~~N~  409 (461)
T 1z7x_W          376 WLADC-DVSDSSCSSLAATLLANHSLRELDLSNNC  409 (461)
T ss_dssp             ECTTS-CCCHHHHHHHHHHHHHCCCCCEEECCSSS
T ss_pred             ECCCC-CCChhhHHHHHHHHHhCCCccEEECCCCC
Confidence            99998 454     567666678999999998554

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=99.80  E-value=1.1e-19  Score=167.97  Aligned_cols=249  Identities=12%  Similarity=0.077  Sum_probs=161.7

Q ss_pred             ccCcccEEEeccCcCccccCchhHHhhhhccceEeeccccCcceEeccCCCCCCCcccccCCCccEEeeccCCCcccccc
Q 036454           45 IFRNLVVVRIFDCQSLKNIFPTSIARSLLRLETLSIKDCGSVEEIVANDGRGNDAATKFIFPSLTFLRLRDLPDLTTFYS  124 (410)
Q Consensus        45 ~l~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~  124 (410)
                      .+++|++|++++| .+..+++..+ .++++|++|+++++. +...+          .+..+++|++|+++++ .++.++.
T Consensus        32 ~~~~L~~L~L~~n-~l~~~~~~~~-~~l~~L~~L~Ls~n~-l~~~~----------~~~~l~~L~~L~Ls~n-~l~~l~~   97 (317)
T 3o53_A           32 SAWNVKELDLSGN-PLSQISAADL-APFTKLELLNLSSNV-LYETL----------DLESLSTLRTLDLNNN-YVQELLV   97 (317)
T ss_dssp             TGGGCSEEECTTS-CCCCCCHHHH-TTCTTCCEEECTTSC-CEEEE----------EETTCTTCCEEECCSS-EEEEEEE
T ss_pred             cCCCCCEEECcCC-ccCcCCHHHh-hCCCcCCEEECCCCc-CCcch----------hhhhcCCCCEEECcCC-ccccccC
Confidence            4567777777777 4555544333 577777777777765 54443          2455677777777766 3333221


Q ss_pred             CcccCCCCCceEEEEccCCccccccEEEeeccCcccccccccccccEEEEEeCCCccchhhhhhhcccCceEEEeccccc
Q 036454          125 GMHILECPELRKLEVNHVDVFANLEELTLSKCIFTTWRQAQFHKLKILHFISDGSDFFQVGLLQNIHNLEKLVLSTCEYK  204 (410)
Q Consensus       125 ~~~~~~~~~L~~L~l~~~~~l~~L~~L~i~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~  204 (410)
                                          .++|+.|++++|.+.......+++|+.|+++...+...+...+..+++|+.|++++|.+.
T Consensus        98 --------------------~~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~  157 (317)
T 3o53_A           98 --------------------GPSIETLHAANNNISRVSCSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEID  157 (317)
T ss_dssp             --------------------CTTCCEEECCSSCCSEEEECCCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCC
T ss_pred             --------------------CCCcCEEECCCCccCCcCccccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCC
Confidence                                145555556655555555444667777777666666665556677888888888888776


Q ss_pred             cccccchhhccccccCcccEEEeCCcccccccccCCCCccccccccceEEEEecccccccccccCccccCccCEEEEccc
Q 036454          205 KIFSCEEVEEHAEGIAQIKSLKLKKLWLIEEHLWNPDSKLDSFLQNLEFLEVKKCALSLISLVPSSASFRNLTVLKVCNC  284 (410)
Q Consensus       205 ~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~l~~l~~~~~~~~~L~~L~l~~c  284 (410)
                      .+..    ......+++|++|+++++.-.  .+     .....+++|++|++++|  .++.+++.+..+++|++|+++++
T Consensus       158 ~~~~----~~~~~~l~~L~~L~L~~N~l~--~~-----~~~~~l~~L~~L~Ls~N--~l~~l~~~~~~l~~L~~L~L~~N  224 (317)
T 3o53_A          158 TVNF----AELAASSDTLEHLNLQYNFIY--DV-----KGQVVFAKLKTLDLSSN--KLAFMGPEFQSAAGVTWISLRNN  224 (317)
T ss_dssp             EEEG----GGGGGGTTTCCEEECTTSCCC--EE-----ECCCCCTTCCEEECCSS--CCCEECGGGGGGTTCSEEECTTS
T ss_pred             cccH----HHHhhccCcCCEEECCCCcCc--cc-----ccccccccCCEEECCCC--cCCcchhhhcccCcccEEECcCC
Confidence            6533    111235688888888874322  11     12234788888888888  57777776778888888888776


Q ss_pred             CCcccccchhhhhcCCCccEEEeccCccc-chhccccCCCCccccccccceeecCcCcccceecCC
Q 036454          285 WQLISLVTPQTAKTLVQLRELRVSECNRL-EEIVANDGDADDEIVFSKLKWLFLESSESITSFCSG  349 (410)
Q Consensus       285 ~~l~~~~~~~~~~~l~~L~~L~l~~c~~l-~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~  349 (410)
                       .++.++.  ....+++|+.|++++++-. ...+..++.      +++|+.|++.+++.++.....
T Consensus       225 -~l~~l~~--~~~~l~~L~~L~l~~N~~~~~~~~~~~~~------~~~L~~l~l~~~~~l~~~~~~  281 (317)
T 3o53_A          225 -KLVLIEK--ALRFSQNLEHFDLRGNGFHCGTLRDFFSK------NQRVQTVAKQTVKKLTGQNEE  281 (317)
T ss_dssp             -CCCEECT--TCCCCTTCCEEECTTCCCBHHHHHHHHHT------CHHHHHHHHHHHHHHHSSSSC
T ss_pred             -cccchhh--HhhcCCCCCEEEccCCCccCcCHHHHHhc------cccceEEECCCchhccCCchh
Confidence             4666653  3567788888888886544 345555555      788888888877777665443

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=99.80  E-value=1.2e-19  Score=181.98  Aligned_cols=240  Identities=13%  Similarity=0.037  Sum_probs=147.4

Q ss_pred             CCCCceEEEEccC---------CccccccEEEeeccCcccccc----cccccccEEEEEeCCCccchhhhhhhcccCceE
Q 036454          130 ECPELRKLEVNHV---------DVFANLEELTLSKCIFTTWRQ----AQFHKLKILHFISDGSDFFQVGLLQNIHNLEKL  196 (410)
Q Consensus       130 ~~~~L~~L~l~~~---------~~l~~L~~L~i~~~~~~~~~~----~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L  196 (410)
                      .+++|+.+.+.++         ..+++|++|++++|.+.....    ..+++|+.|++...............+++|+.|
T Consensus       268 ~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L  347 (592)
T 3ogk_B          268 FPRKLCRLGLSYMGPNEMPILFPFAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETRNVIGDRGLEVLAQYCKQLKRL  347 (592)
T ss_dssp             CCTTCCEEEETTCCTTTGGGGGGGGGGCCEEEETTCCCCHHHHHHHHTTCTTCCEEEEEGGGHHHHHHHHHHHCTTCCEE
T ss_pred             ccccccccCccccchhHHHHHHhhcCCCcEEecCCCcCCHHHHHHHHHhCcCCCEEeccCccCHHHHHHHHHhCCCCCEE
Confidence            4567777777555         345688888888887433222    127888998886332222223334678889999


Q ss_pred             EEec----------c-ccccccccchhhccccccCcccEEEeCCcccccccccCCCCccc-cccccceEEEEec---ccc
Q 036454          197 VLST----------C-EYKKIFSCEEVEEHAEGIAQIKSLKLKKLWLIEEHLWNPDSKLD-SFLQNLEFLEVKK---CAL  261 (410)
Q Consensus       197 ~l~~----------~-~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~-~~~~~L~~L~l~~---~~~  261 (410)
                      ++++          | .+.....    .....++++|++|++ .|..+ ...   ....+ ..+++|++|++.+   |. 
T Consensus       348 ~L~~g~~~~~~~~~~~~~~~~~~----~~l~~~~~~L~~L~l-~~~~l-~~~---~~~~l~~~~~~L~~L~l~~~~~~n-  417 (592)
T 3ogk_B          348 RIERGADEQGMEDEEGLVSQRGL----IALAQGCQELEYMAV-YVSDI-TNE---SLESIGTYLKNLCDFRLVLLDREE-  417 (592)
T ss_dssp             EEECCCCSSTTSSTTCCCCHHHH----HHHHHHCTTCSEEEE-EESCC-CHH---HHHHHHHHCCSCCEEEEEECSCCS-
T ss_pred             EeecCccccccccccCccCHHHH----HHHHhhCccCeEEEe-ecCCc-cHH---HHHHHHhhCCCCcEEEEeecCCCc-
Confidence            9984          3 2222100    112345789999999 44433 211   12223 3489999999984   43 


Q ss_pred             cccccc------cCccccCccCEEEEcccCC-cccccchhhhhcCCCccEEEeccCcccch--hccccCCCCcccccccc
Q 036454          262 SLISLV------PSSASFRNLTVLKVCNCWQ-LISLVTPQTAKTLVQLRELRVSECNRLEE--IVANDGDADDEIVFSKL  332 (410)
Q Consensus       262 ~l~~l~------~~~~~~~~L~~L~l~~c~~-l~~~~~~~~~~~l~~L~~L~l~~c~~l~~--~~~~~~~~~~~~~~~~L  332 (410)
                      .++..|      .....+++|++|++++|.+ +...........+++|++|++++|. +++  ++.....      +++|
T Consensus       418 ~l~~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n~-l~~~~~~~~~~~------~~~L  490 (592)
T 3ogk_B          418 RITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVG-ESDEGLMEFSRG------CPNL  490 (592)
T ss_dssp             CCSSCCCHHHHHHHHHHCTTCCEEEEECCGGGCCHHHHHHHHHSCTTCCEEEECSCC-SSHHHHHHHHTC------CTTC
T ss_pred             cccCchHHHHHHHHHHhCCCCCEEEEecCCCCccHHHHHHHHHhCccceEeeccCCC-CCHHHHHHHHhc------Cccc
Confidence            454422      2245689999999988754 3333222334568999999999875 432  2333344      8999


Q ss_pred             ceeecCcCcccceecCCCcccCCCCccEEEEecCCCCcccCC--CCCCCCCcceeEec
Q 036454          333 KWLFLESSESITSFCSGNYAFSFPSLEDLIVENCPKLNTFSA--GVLKTPRLQAVQNW  388 (410)
Q Consensus       333 ~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~--~~~~~~~L~~l~~~  388 (410)
                      ++|++++|+ +++.........+++|++|++++|. +.....  -...+|.++...+.
T Consensus       491 ~~L~l~~n~-l~~~~~~~~~~~l~~L~~L~ls~n~-it~~~~~~l~~~~p~l~~~~~~  546 (592)
T 3ogk_B          491 QKLEMRGCC-FSERAIAAAVTKLPSLRYLWVQGYR-ASMTGQDLMQMARPYWNIELIP  546 (592)
T ss_dssp             CEEEEESCC-CBHHHHHHHHHHCSSCCEEEEESCB-CCTTCTTGGGGCCTTEEEEEEC
T ss_pred             CeeeccCCC-CcHHHHHHHHHhcCccCeeECcCCc-CCHHHHHHHHHhCCCcEEEEec
Confidence            999999998 6554333334468999999999996 443211  11245666666554

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=99.79  E-value=4.4e-20  Score=185.24  Aligned_cols=348  Identities=15%  Similarity=0.097  Sum_probs=199.0

Q ss_pred             ccccccCCcEEEecCccccccc------cccC-----CccccccCcccEEEeccCcCccccCchhHHhhhhccceEeecc
Q 036454           14 HSGAATQLRELHVFHLPKLTKL------WNKD-----PQGKLIFRNLVVVRIFDCQSLKNIFPTSIARSLLRLETLSIKD   82 (410)
Q Consensus        14 ~~~~~~~L~~L~l~~~~~l~~~------~~~~-----~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~   82 (410)
                      .+..|++|+.|++.+++.+...      |.+.     +.....+++|++|++++|. +.+..+..+...+++|++|++++
T Consensus        61 ~~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~-~~~~~~~~l~~~~~~L~~L~L~~  139 (594)
T 2p1m_B           61 VIRRFPKVRSVELKGKPHFADFNLVPDGWGGYVYPWIEAMSSSYTWLEEIRLKRMV-VTDDCLELIAKSFKNFKVLVLSS  139 (594)
T ss_dssp             HHHHCTTCCEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCB-CCHHHHHHHHHHCTTCCEEEEES
T ss_pred             HHhhCCCceEEeccCCCchhhcccccccccchhhHHHHHHHHhCCCCCeEEeeCcE-EcHHHHHHHHHhCCCCcEEeCCC
Confidence            3566888899988887644322      1000     0112367888888888884 54443444444688888888888


Q ss_pred             ccCcce--EeccCCCCCCCcccccCCCccEEeeccCCCcccccc---CcccCCCCCceEEEEccCC-------------c
Q 036454           83 CGSVEE--IVANDGRGNDAATKFIFPSLTFLRLRDLPDLTTFYS---GMHILECPELRKLEVNHVD-------------V  144 (410)
Q Consensus        83 ~~~l~~--~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~---~~~~~~~~~L~~L~l~~~~-------------~  144 (410)
                      |..+..  ++.         ....+++|++|++++|. +.+...   ......+++|++|++++|.             .
T Consensus       140 ~~~~~~~~l~~---------~~~~~~~L~~L~L~~~~-i~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~  209 (594)
T 2p1m_B          140 CEGFSTDGLAA---------IAATCRNLKELDLRESD-VDDVSGHWLSHFPDTYTSLVSLNISCLASEVSFSALERLVTR  209 (594)
T ss_dssp             CEEEEHHHHHH---------HHHHCTTCCEEECTTCE-EECCCGGGGGGSCTTCCCCCEEECTTCCSCCCHHHHHHHHHH
T ss_pred             cCCCCHHHHHH---------HHHhCCCCCEEeCcCCc-cCCcchHHHHHHhhcCCcCcEEEecccCCcCCHHHHHHHHHh
Confidence            753433  221         33467888888888774 333211   1112356788888887662             2


Q ss_pred             cccccEEEeeccCcccccccc---cccccEEEEE-e------------------------------CCCccchhhhhhhc
Q 036454          145 FANLEELTLSKCIFTTWRQAQ---FHKLKILHFI-S------------------------------DGSDFFQVGLLQNI  190 (410)
Q Consensus       145 l~~L~~L~i~~~~~~~~~~~~---l~~L~~L~l~-~------------------------------~~~~~~~~~~l~~l  190 (410)
                      +++|+.|++++|......+..   +++|+.|++. +                              .....++ ..+..+
T Consensus       210 ~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~l~~~~~L~~Ls~~~~~~~~~l~-~~~~~~  288 (594)
T 2p1m_B          210 CPNLKSLKLNRAVPLEKLATLLQRAPQLEELGTGGYTAEVRPDVYSGLSVALSGCKELRCLSGFWDAVPAYLP-AVYSVC  288 (594)
T ss_dssp             CTTCCEEECCTTSCHHHHHHHHHHCTTCSEEECSBCCCCCCHHHHHHHHHHHHTCTTCCEEECCBTCCGGGGG-GGHHHH
T ss_pred             CCCCcEEecCCCCcHHHHHHHHhcCCcceEcccccccCccchhhHHHHHHHHhcCCCcccccCCcccchhhHH-HHHHhh
Confidence            377888888777322211111   5666666641 1                              1111111 223456


Q ss_pred             ccCceEEEeccccccccccchhhccccccCcccEEEeCCcccccccccCCCCccccccccceEEEEecc--------ccc
Q 036454          191 HNLEKLVLSTCEYKKIFSCEEVEEHAEGIAQIKSLKLKKLWLIEEHLWNPDSKLDSFLQNLEFLEVKKC--------ALS  262 (410)
Q Consensus       191 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~L~~L~l~~~--------~~~  262 (410)
                      ++|+.|++++|.+....    .......+++|++|++++|..- ..+    ......+++|++|++.+|        . .
T Consensus       289 ~~L~~L~L~~~~l~~~~----l~~~~~~~~~L~~L~l~~~~~~-~~l----~~l~~~~~~L~~L~L~~~~~~g~~~~~-~  358 (594)
T 2p1m_B          289 SRLTTLNLSYATVQSYD----LVKLLCQCPKLQRLWVLDYIED-AGL----EVLASTCKDLRELRVFPSEPFVMEPNV-A  358 (594)
T ss_dssp             TTCCEEECTTCCCCHHH----HHHHHTTCTTCCEEEEEGGGHH-HHH----HHHHHHCTTCCEEEEECSCTTCSSCSS-C
T ss_pred             CCCCEEEccCCCCCHHH----HHHHHhcCCCcCEEeCcCccCH-HHH----HHHHHhCCCCCEEEEecCcccccccCC-C
Confidence            77888887777643211    1112345678888888776211 111    122345788888888443        2 2


Q ss_pred             ccc--cccCccccCccCEEEEcccCCcccccchhhhhcCCCccEEEec-----cCcccchhccc------cCCCCccccc
Q 036454          263 LIS--LVPSSASFRNLTVLKVCNCWQLISLVTPQTAKTLVQLRELRVS-----ECNRLEEIVAN------DGDADDEIVF  329 (410)
Q Consensus       263 l~~--l~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~-----~c~~l~~~~~~------~~~~~~~~~~  329 (410)
                      ++.  +......+++|++|.+ +|.+++..........+++|++|++.     +|..++..+..      ...      +
T Consensus       359 l~~~~l~~l~~~~~~L~~L~~-~~~~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~l~~~------~  431 (594)
T 2p1m_B          359 LTEQGLVSVSMGCPKLESVLY-FCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEH------C  431 (594)
T ss_dssp             CCHHHHHHHHHHCTTCCEEEE-EESCCCHHHHHHHHHHCTTCCEEEEEESSTTCCCTTTCCCTHHHHHHHHHH------C
T ss_pred             CCHHHHHHHHHhchhHHHHHH-hcCCcCHHHHHHHHhhCCCcceeEeecccCCCcccccCCchhhHHHHHHhh------C
Confidence            221  1111234788888855 56666654433344568899999998     56666633221      223      7


Q ss_pred             cccceeecCcCcccceecCCCcccCCCCccEEEEecCCCCcccCCCC-CCCCCcceeEecccch
Q 036454          330 SKLKWLFLESSESITSFCSGNYAFSFPSLEDLIVENCPKLNTFSAGV-LKTPRLQAVQNWELGE  392 (410)
Q Consensus       330 ~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~-~~~~~L~~l~~~~~~~  392 (410)
                      ++|+.|++++  .+++.........+++|++|++.+|.--......+ ..+++|++|+++++..
T Consensus       432 ~~L~~L~L~~--~l~~~~~~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~  493 (594)
T 2p1m_B          432 KDLRRLSLSG--LLTDKVFEYIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPF  493 (594)
T ss_dssp             TTCCEEECCS--SCCHHHHHHHHHHCTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCSC
T ss_pred             CCccEEeecC--cccHHHHHHHHHhchhccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCCC
Confidence            8899999976  55554433333348999999999885311111111 3479999999986553

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=99.79  E-value=4.5e-18  Score=169.94  Aligned_cols=251  Identities=20%  Similarity=0.099  Sum_probs=150.7

Q ss_pred             ccCCcEEEecCccccccccccCCccccccCcccEEEeccCcCccccCchhHHhhhhccceEeeccccCcceEeccCCCCC
Q 036454           18 ATQLRELHVFHLPKLTKLWNKDPQGKLIFRNLVVVRIFDCQSLKNIFPTSIARSLLRLETLSIKDCGSVEEIVANDGRGN   97 (410)
Q Consensus        18 ~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~   97 (410)
                      ..+++.|+++++ .++.+    |..+.  ++|++|++++| .++.++.     .+++|++|+++++. ++.+|.      
T Consensus        39 ~~~l~~L~ls~n-~L~~l----p~~l~--~~L~~L~L~~N-~l~~lp~-----~l~~L~~L~Ls~N~-l~~lp~------   98 (622)
T 3g06_A           39 NNGNAVLNVGES-GLTTL----PDCLP--AHITTLVIPDN-NLTSLPA-----LPPELRTLEVSGNQ-LTSLPV------   98 (622)
T ss_dssp             HHCCCEEECCSS-CCSCC----CSCCC--TTCSEEEECSC-CCSCCCC-----CCTTCCEEEECSCC-CSCCCC------
T ss_pred             CCCCcEEEecCC-CcCcc----ChhhC--CCCcEEEecCC-CCCCCCC-----cCCCCCEEEcCCCc-CCcCCC------
Confidence            346888888887 45544    55432  78999999888 5666644     46889999998886 666553      


Q ss_pred             CCcccccCCCccEEeeccCCCccccccCcccCCCCCceEEEEccC------CccccccEEEeeccCcccccccccccccE
Q 036454           98 DAATKFIFPSLTFLRLRDLPDLTTFYSGMHILECPELRKLEVNHV------DVFANLEELTLSKCIFTTWRQAQFHKLKI  171 (410)
Q Consensus        98 ~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~~------~~l~~L~~L~i~~~~~~~~~~~~l~~L~~  171 (410)
                            .+++|++|+++++ .++.++.     .+++|+.|+++++      ..+++|++|++++|.+..++. .+++|+.
T Consensus        99 ------~l~~L~~L~Ls~N-~l~~l~~-----~l~~L~~L~L~~N~l~~lp~~l~~L~~L~Ls~N~l~~l~~-~~~~L~~  165 (622)
T 3g06_A           99 ------LPPGLLELSIFSN-PLTHLPA-----LPSGLCKLWIFGNQLTSLPVLPPGLQELSVSDNQLASLPA-LPSELCK  165 (622)
T ss_dssp             ------CCTTCCEEEECSC-CCCCCCC-----CCTTCCEEECCSSCCSCCCCCCTTCCEEECCSSCCSCCCC-CCTTCCE
T ss_pred             ------CCCCCCEEECcCC-cCCCCCC-----CCCCcCEEECCCCCCCcCCCCCCCCCEEECcCCcCCCcCC-ccCCCCE
Confidence                  4588899998887 5555444     3467777777666      223566677776666554432 2556666


Q ss_pred             EEEEeCCCccchhhhhhhcccCceEEEeccccccccccchhhccccccCcccEEEeCCcccccccccCCCCccccccccc
Q 036454          172 LHFISDGSDFFQVGLLQNIHNLEKLVLSTCEYKKIFSCEEVEEHAEGIAQIKSLKLKKLWLIEEHLWNPDSKLDSFLQNL  251 (410)
Q Consensus       172 L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~L  251 (410)
                      |++..+.+..++    ..+++|+.|++++|.+..+..         .+++|+.|+++++. + ..+       ...+++|
T Consensus       166 L~L~~N~l~~l~----~~~~~L~~L~Ls~N~l~~l~~---------~~~~L~~L~L~~N~-l-~~l-------~~~~~~L  223 (622)
T 3g06_A          166 LWAYNNQLTSLP----MLPSGLQELSVSDNQLASLPT---------LPSELYKLWAYNNR-L-TSL-------PALPSGL  223 (622)
T ss_dssp             EECCSSCCSCCC----CCCTTCCEEECCSSCCSCCCC---------CCTTCCEEECCSSC-C-SSC-------CCCCTTC
T ss_pred             EECCCCCCCCCc----ccCCCCcEEECCCCCCCCCCC---------ccchhhEEECcCCc-c-ccc-------CCCCCCC
Confidence            666555555544    334666666666666554422         23566666666521 1 111       1224566


Q ss_pred             eEEEEecccccccccccCccccCccCEEEEcccCCcccccchhhhhcCCCccEEEeccCcccchhccccCCCCccccccc
Q 036454          252 EFLEVKKCALSLISLVPSSASFRNLTVLKVCNCWQLISLVTPQTAKTLVQLRELRVSECNRLEEIVANDGDADDEIVFSK  331 (410)
Q Consensus       252 ~~L~l~~~~~~l~~l~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~  331 (410)
                      ++|++++|  .++.++   ..+++|++|+++++ +++.++.     .+++|+.|++++| .++.++..+..      +++
T Consensus       224 ~~L~Ls~N--~L~~lp---~~l~~L~~L~Ls~N-~L~~lp~-----~~~~L~~L~Ls~N-~L~~lp~~l~~------l~~  285 (622)
T 3g06_A          224 KELIVSGN--RLTSLP---VLPSELKELMVSGN-RLTSLPM-----LPSGLLSLSVYRN-QLTRLPESLIH------LSS  285 (622)
T ss_dssp             CEEECCSS--CCSCCC---CCCTTCCEEECCSS-CCSCCCC-----CCTTCCEEECCSS-CCCSCCGGGGG------SCT
T ss_pred             CEEEccCC--ccCcCC---CCCCcCcEEECCCC-CCCcCCc-----ccccCcEEeCCCC-CCCcCCHHHhh------ccc
Confidence            66666666  444444   34456666666555 4555542     4556666666654 44455555555      666


Q ss_pred             cceeecCcCc
Q 036454          332 LKWLFLESSE  341 (410)
Q Consensus       332 L~~L~l~~c~  341 (410)
                      |+.|++++++
T Consensus       286 L~~L~L~~N~  295 (622)
T 3g06_A          286 ETTVNLEGNP  295 (622)
T ss_dssp             TCEEECCSCC
T ss_pred             cCEEEecCCC
Confidence            6666666643

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=99.79  E-value=5e-19  Score=163.07  Aligned_cols=251  Identities=17%  Similarity=0.071  Sum_probs=153.8

Q ss_pred             cCCcEEEecCccccccccccCCccccccCcccEEEeccCcCccccCchhHHhhhhccceEeeccccCcc-eEeccCCCCC
Q 036454           19 TQLRELHVFHLPKLTKLWNKDPQGKLIFRNLVVVRIFDCQSLKNIFPTSIARSLLRLETLSIKDCGSVE-EIVANDGRGN   97 (410)
Q Consensus        19 ~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~-~~~~~~~~~~   97 (410)
                      .+++.|+++++. ++.. ...|..+..+++|++|+++++..+....|..+ +++++|++|+++++. +. .+|.      
T Consensus        50 ~~l~~L~L~~~~-l~~~-~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l-~~l~~L~~L~Ls~n~-l~~~~p~------  119 (313)
T 1ogq_A           50 YRVNNLDLSGLN-LPKP-YPIPSSLANLPYLNFLYIGGINNLVGPIPPAI-AKLTQLHYLYITHTN-VSGAIPD------  119 (313)
T ss_dssp             CCEEEEEEECCC-CSSC-EECCGGGGGCTTCSEEEEEEETTEESCCCGGG-GGCTTCSEEEEEEEC-CEEECCG------
T ss_pred             ceEEEEECCCCC-ccCC-cccChhHhCCCCCCeeeCCCCCcccccCChhH-hcCCCCCEEECcCCe-eCCcCCH------
Confidence            467777777663 2210 01255666777777777774224443333333 567777777777665 44 3443      


Q ss_pred             CCcccccCCCccEEeeccCCCcc-ccccCcccCCCCCceEEEEccCCccccccEEEeeccCcccccccc---cc-cccEE
Q 036454           98 DAATKFIFPSLTFLRLRDLPDLT-TFYSGMHILECPELRKLEVNHVDVFANLEELTLSKCIFTTWRQAQ---FH-KLKIL  172 (410)
Q Consensus        98 ~~~~~~~l~~L~~L~l~~~~~l~-~~~~~~~~~~~~~L~~L~l~~~~~l~~L~~L~i~~~~~~~~~~~~---l~-~L~~L  172 (410)
                         .+..+++|++|+++++ .+. ..+...                ..+++|++|++++|.+....+..   ++ +|+.|
T Consensus       120 ---~~~~l~~L~~L~Ls~N-~l~~~~p~~~----------------~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L  179 (313)
T 1ogq_A          120 ---FLSQIKTLVTLDFSYN-ALSGTLPPSI----------------SSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSM  179 (313)
T ss_dssp             ---GGGGCTTCCEEECCSS-EEESCCCGGG----------------GGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEE
T ss_pred             ---HHhCCCCCCEEeCCCC-ccCCcCChHH----------------hcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEE
Confidence               5566677777777766 333 222211                12356666666666665333322   44 78888


Q ss_pred             EEEeCCCccchhhhhhhcccCceEEEeccccccccccchhhccccccCcccEEEeCCcccccccccCCCCccccccccce
Q 036454          173 HFISDGSDFFQVGLLQNIHNLEKLVLSTCEYKKIFSCEEVEEHAEGIAQIKSLKLKKLWLIEEHLWNPDSKLDSFLQNLE  252 (410)
Q Consensus       173 ~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~L~  252 (410)
                      ++....+.......+..++ |+.|++++|.+....+     ..+..+++|+.|+++++... ..     ...+..+++|+
T Consensus       180 ~L~~N~l~~~~~~~~~~l~-L~~L~Ls~N~l~~~~~-----~~~~~l~~L~~L~L~~N~l~-~~-----~~~~~~l~~L~  247 (313)
T 1ogq_A          180 TISRNRLTGKIPPTFANLN-LAFVDLSRNMLEGDAS-----VLFGSDKNTQKIHLAKNSLA-FD-----LGKVGLSKNLN  247 (313)
T ss_dssp             ECCSSEEEEECCGGGGGCC-CSEEECCSSEEEECCG-----GGCCTTSCCSEEECCSSEEC-CB-----GGGCCCCTTCC
T ss_pred             ECcCCeeeccCChHHhCCc-ccEEECcCCcccCcCC-----HHHhcCCCCCEEECCCCcee-ee-----cCcccccCCCC
Confidence            8855554433334556666 9999999887665433     24567889999999884322 11     22356678999


Q ss_pred             EEEEecccccccccccCccccCccCEEEEcccCCcc-cccchhhhhcCCCccEEEeccCcccchh
Q 036454          253 FLEVKKCALSLISLVPSSASFRNLTVLKVCNCWQLI-SLVTPQTAKTLVQLRELRVSECNRLEEI  316 (410)
Q Consensus       253 ~L~l~~~~~~l~~l~~~~~~~~~L~~L~l~~c~~l~-~~~~~~~~~~l~~L~~L~l~~c~~l~~~  316 (410)
                      +|++++|. ....+|..+..+++|++|+++++. +. .++.   ...+++|+.+++.+++.+...
T Consensus       248 ~L~Ls~N~-l~~~~p~~l~~l~~L~~L~Ls~N~-l~~~ip~---~~~l~~L~~l~l~~N~~lc~~  307 (313)
T 1ogq_A          248 GLDLRNNR-IYGTLPQGLTQLKFLHSLNVSFNN-LCGEIPQ---GGNLQRFDVSAYANNKCLCGS  307 (313)
T ss_dssp             EEECCSSC-CEECCCGGGGGCTTCCEEECCSSE-EEEECCC---STTGGGSCGGGTCSSSEEEST
T ss_pred             EEECcCCc-ccCcCChHHhcCcCCCEEECcCCc-ccccCCC---CccccccChHHhcCCCCccCC
Confidence            99999985 333577777888999999998874 44 4442   267788888888887655543

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=99.78  E-value=1.2e-17  Score=166.87  Aligned_cols=254  Identities=22%  Similarity=0.144  Sum_probs=158.7

Q ss_pred             CcccEEEeccCcCccccCchhHHhhhhccceEeeccccCcceEeccCCCCCCCcccccCCCccEEeeccCCCccccccCc
Q 036454           47 RNLVVVRIFDCQSLKNIFPTSIARSLLRLETLSIKDCGSVEEIVANDGRGNDAATKFIFPSLTFLRLRDLPDLTTFYSGM  126 (410)
Q Consensus        47 ~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~  126 (410)
                      .++++|+++++ .++.+|.. +   .++|++|+++++. ++.+|.            .+++|+.|+++++ .++.++.  
T Consensus        40 ~~l~~L~ls~n-~L~~lp~~-l---~~~L~~L~L~~N~-l~~lp~------------~l~~L~~L~Ls~N-~l~~lp~--   98 (622)
T 3g06_A           40 NGNAVLNVGES-GLTTLPDC-L---PAHITTLVIPDNN-LTSLPA------------LPPELRTLEVSGN-QLTSLPV--   98 (622)
T ss_dssp             HCCCEEECCSS-CCSCCCSC-C---CTTCSEEEECSCC-CSCCCC------------CCTTCCEEEECSC-CCSCCCC--
T ss_pred             CCCcEEEecCC-CcCccChh-h---CCCCcEEEecCCC-CCCCCC------------cCCCCCEEEcCCC-cCCcCCC--
Confidence            46889999887 56666543 2   2789999999886 776653            4588999999987 4555443  


Q ss_pred             ccCCCCCceEEEEccCCccccccEEEeeccCcccccccccccccEEEEEeCCCccchhhhhhhcccCceEEEeccccccc
Q 036454          127 HILECPELRKLEVNHVDVFANLEELTLSKCIFTTWRQAQFHKLKILHFISDGSDFFQVGLLQNIHNLEKLVLSTCEYKKI  206 (410)
Q Consensus       127 ~~~~~~~L~~L~l~~~~~l~~L~~L~i~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~  206 (410)
                         .+++|++|++++              |.+..++. .+++|+.|++..+.+..++.    .+++|+.|++++|.+..+
T Consensus        99 ---~l~~L~~L~Ls~--------------N~l~~l~~-~l~~L~~L~L~~N~l~~lp~----~l~~L~~L~Ls~N~l~~l  156 (622)
T 3g06_A           99 ---LPPGLLELSIFS--------------NPLTHLPA-LPSGLCKLWIFGNQLTSLPV----LPPGLQELSVSDNQLASL  156 (622)
T ss_dssp             ---CCTTCCEEEECS--------------CCCCCCCC-CCTTCCEEECCSSCCSCCCC----CCTTCCEEECCSSCCSCC
T ss_pred             ---CCCCCCEEECcC--------------CcCCCCCC-CCCCcCEEECCCCCCCcCCC----CCCCCCEEECcCCcCCCc
Confidence               335555555544              44443333 35566666665544555442    246777777777766554


Q ss_pred             cccchhhccccccCcccEEEeCCcccccccccCCCCccccccccceEEEEecccccccccccCccccCccCEEEEcccCC
Q 036454          207 FSCEEVEEHAEGIAQIKSLKLKKLWLIEEHLWNPDSKLDSFLQNLEFLEVKKCALSLISLVPSSASFRNLTVLKVCNCWQ  286 (410)
Q Consensus       207 ~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~l~~l~~~~~~~~~L~~L~l~~c~~  286 (410)
                      ..         .+++|+.|+++++     .+..    ....+++|+.|++++|  .++.++.   .+++|+.|+++++ .
T Consensus       157 ~~---------~~~~L~~L~L~~N-----~l~~----l~~~~~~L~~L~Ls~N--~l~~l~~---~~~~L~~L~L~~N-~  212 (622)
T 3g06_A          157 PA---------LPSELCKLWAYNN-----QLTS----LPMLPSGLQELSVSDN--QLASLPT---LPSELYKLWAYNN-R  212 (622)
T ss_dssp             CC---------CCTTCCEEECCSS-----CCSC----CCCCCTTCCEEECCSS--CCSCCCC---CCTTCCEEECCSS-C
T ss_pred             CC---------ccCCCCEEECCCC-----CCCC----CcccCCCCcEEECCCC--CCCCCCC---ccchhhEEECcCC-c
Confidence            22         2466777777763     2211    1144577777777777  4555543   3467777777665 4


Q ss_pred             cccccchhhhhcCCCccEEEeccCcccchhccccCCCCccccccccceeecCcCcccceecCCCcccCCCCccEEEEecC
Q 036454          287 LISLVTPQTAKTLVQLRELRVSECNRLEEIVANDGDADDEIVFSKLKWLFLESSESITSFCSGNYAFSFPSLEDLIVENC  366 (410)
Q Consensus       287 l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~l~~c  366 (410)
                      +..++     ..+++|++|++++| .++.++   ..      +++|+.|+++++ .++.++.     .+++|+.|++++|
T Consensus       213 l~~l~-----~~~~~L~~L~Ls~N-~L~~lp---~~------l~~L~~L~Ls~N-~L~~lp~-----~~~~L~~L~Ls~N  271 (622)
T 3g06_A          213 LTSLP-----ALPSGLKELIVSGN-RLTSLP---VL------PSELKELMVSGN-RLTSLPM-----LPSGLLSLSVYRN  271 (622)
T ss_dssp             CSSCC-----CCCTTCCEEECCSS-CCSCCC---CC------CTTCCEEECCSS-CCSCCCC-----CCTTCCEEECCSS
T ss_pred             ccccC-----CCCCCCCEEEccCC-ccCcCC---CC------CCcCcEEECCCC-CCCcCCc-----ccccCcEEeCCCC
Confidence            55554     33567777777765 455544   22      677777777774 4665554     2677777777766


Q ss_pred             CCCcccCCCCCCCCCcceeEecc
Q 036454          367 PKLNTFSAGVLKTPRLQAVQNWE  389 (410)
Q Consensus       367 ~~l~~~~~~~~~~~~L~~l~~~~  389 (410)
                       .+..+|..+..+++|+.|++++
T Consensus       272 -~L~~lp~~l~~l~~L~~L~L~~  293 (622)
T 3g06_A          272 -QLTRLPESLIHLSSETTVNLEG  293 (622)
T ss_dssp             -CCCSCCGGGGGSCTTCEEECCS
T ss_pred             -CCCcCCHHHhhccccCEEEecC
Confidence             5567777666777777777763

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=99.76  E-value=8.4e-18  Score=154.86  Aligned_cols=245  Identities=16%  Similarity=0.124  Sum_probs=127.7

Q ss_pred             CcccEEEeccCcCccc--cCchhHHhhhhccceEeeccccCcc-eEeccCCCCCCCcccccCCCccEEeeccCCCcc-cc
Q 036454           47 RNLVVVRIFDCQSLKN--IFPTSIARSLLRLETLSIKDCGSVE-EIVANDGRGNDAATKFIFPSLTFLRLRDLPDLT-TF  122 (410)
Q Consensus        47 ~~L~~L~l~~~~~l~~--~~~~~~~~~l~~L~~L~l~~~~~l~-~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~-~~  122 (410)
                      .++++|+++++ .+..  ..+..+ .++++|++|+++++..+. .+|.         .+..+++|++|+++++ .+. ..
T Consensus        50 ~~l~~L~L~~~-~l~~~~~~~~~l-~~l~~L~~L~L~~~n~l~~~~p~---------~l~~l~~L~~L~Ls~n-~l~~~~  117 (313)
T 1ogq_A           50 YRVNNLDLSGL-NLPKPYPIPSSL-ANLPYLNFLYIGGINNLVGPIPP---------AIAKLTQLHYLYITHT-NVSGAI  117 (313)
T ss_dssp             CCEEEEEEECC-CCSSCEECCGGG-GGCTTCSEEEEEEETTEESCCCG---------GGGGCTTCSEEEEEEE-CCEEEC
T ss_pred             ceEEEEECCCC-CccCCcccChhH-hCCCCCCeeeCCCCCcccccCCh---------hHhcCCCCCEEECcCC-eeCCcC
Confidence            57889999888 4442  223333 688999999998633344 4554         6777888999998887 343 33


Q ss_pred             ccCcccCCCCCceEEEEccCCccccccEEEeeccCcccccccc---cccccEEEEEeCCCc-cchhhhhhhcc-cCceEE
Q 036454          123 YSGMHILECPELRKLEVNHVDVFANLEELTLSKCIFTTWRQAQ---FHKLKILHFISDGSD-FFQVGLLQNIH-NLEKLV  197 (410)
Q Consensus       123 ~~~~~~~~~~~L~~L~l~~~~~l~~L~~L~i~~~~~~~~~~~~---l~~L~~L~l~~~~~~-~~~~~~l~~l~-~L~~L~  197 (410)
                      +...  ..+              ++|++|++++|.+....+..   +++|++|++..+.+. ..+ ..+..++ +|+.|+
T Consensus       118 p~~~--~~l--------------~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p-~~l~~l~~~L~~L~  180 (313)
T 1ogq_A          118 PDFL--SQI--------------KTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIP-DSYGSFSKLFTSMT  180 (313)
T ss_dssp             CGGG--GGC--------------TTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECC-GGGGCCCTTCCEEE
T ss_pred             CHHH--hCC--------------CCCCEEeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCC-HHHhhhhhcCcEEE
Confidence            3222  123              55555666655555333221   556666666444444 233 3344554 666666


Q ss_pred             EeccccccccccchhhccccccCcccEEEeCCcccccccccCCCCccccccccceEEEEecccccccccccCccccCccC
Q 036454          198 LSTCEYKKIFSCEEVEEHAEGIAQIKSLKLKKLWLIEEHLWNPDSKLDSFLQNLEFLEVKKCALSLISLVPSSASFRNLT  277 (410)
Q Consensus       198 l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~l~~l~~~~~~~~~L~  277 (410)
                      +++|.+....+     ..+..+. |+.|+++++...     ......+..+++|++|++++|.  ++..++....+++|+
T Consensus       181 L~~N~l~~~~~-----~~~~~l~-L~~L~Ls~N~l~-----~~~~~~~~~l~~L~~L~L~~N~--l~~~~~~~~~l~~L~  247 (313)
T 1ogq_A          181 ISRNRLTGKIP-----PTFANLN-LAFVDLSRNMLE-----GDASVLFGSDKNTQKIHLAKNS--LAFDLGKVGLSKNLN  247 (313)
T ss_dssp             CCSSEEEEECC-----GGGGGCC-CSEEECCSSEEE-----ECCGGGCCTTSCCSEEECCSSE--ECCBGGGCCCCTTCC
T ss_pred             CcCCeeeccCC-----hHHhCCc-ccEEECcCCccc-----CcCCHHHhcCCCCCEEECCCCc--eeeecCcccccCCCC
Confidence            66665543322     0122233 666666653211     1122334555666666666652  333333344555666


Q ss_pred             EEEEcccCCcc-cccchhhhhcCCCccEEEeccCcccchhccccCCCCccccccccceeecCcCccc
Q 036454          278 VLKVCNCWQLI-SLVTPQTAKTLVQLRELRVSECNRLEEIVANDGDADDEIVFSKLKWLFLESSESI  343 (410)
Q Consensus       278 ~L~l~~c~~l~-~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l  343 (410)
                      +|+++++. +. .++  ..+..+++|++|+++++.-...+|.. +.      +++|+.|++.+.+.+
T Consensus       248 ~L~Ls~N~-l~~~~p--~~l~~l~~L~~L~Ls~N~l~~~ip~~-~~------l~~L~~l~l~~N~~l  304 (313)
T 1ogq_A          248 GLDLRNNR-IYGTLP--QGLTQLKFLHSLNVSFNNLCGEIPQG-GN------LQRFDVSAYANNKCL  304 (313)
T ss_dssp             EEECCSSC-CEECCC--GGGGGCTTCCEEECCSSEEEEECCCS-TT------GGGSCGGGTCSSSEE
T ss_pred             EEECcCCc-ccCcCC--hHHhcCcCCCEEECcCCcccccCCCC-cc------ccccChHHhcCCCCc
Confidence            66665542 33 222  23455556666666554332233332 33      555555555555433

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=99.76  E-value=1.1e-18  Score=161.02  Aligned_cols=245  Identities=15%  Similarity=0.138  Sum_probs=178.4

Q ss_pred             cccccCCcEEEecCccccccccccCCccccccCcccEEEeccCcCccccCchhHHhhhhccceEeeccccCcceEeccCC
Q 036454           15 SGAATQLRELHVFHLPKLTKLWNKDPQGKLIFRNLVVVRIFDCQSLKNIFPTSIARSLLRLETLSIKDCGSVEEIVANDG   94 (410)
Q Consensus        15 ~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~   94 (410)
                      ...+++|++|+++++ .++.+   .|..+..+++|++|++++| .+...++.   .++++|++|+++++. +..++.   
T Consensus        30 ~~~~~~L~~L~L~~n-~l~~~---~~~~~~~l~~L~~L~Ls~n-~l~~~~~~---~~l~~L~~L~Ls~n~-l~~l~~---   97 (317)
T 3o53_A           30 RQSAWNVKELDLSGN-PLSQI---SAADLAPFTKLELLNLSSN-VLYETLDL---ESLSTLRTLDLNNNY-VQELLV---   97 (317)
T ss_dssp             HTTGGGCSEEECTTS-CCCCC---CHHHHTTCTTCCEEECTTS-CCEEEEEE---TTCTTCCEEECCSSE-EEEEEE---
T ss_pred             hccCCCCCEEECcCC-ccCcC---CHHHhhCCCcCCEEECCCC-cCCcchhh---hhcCCCCEEECcCCc-cccccC---
Confidence            344679999999998 44433   1356779999999999999 55555453   789999999999986 776653   


Q ss_pred             CCCCCcccccCCCccEEeeccCCCccccccCcccCCCCCceEEEEccCCccccccEEEeeccCcccccccc---cccccE
Q 036454           95 RGNDAATKFIFPSLTFLRLRDLPDLTTFYSGMHILECPELRKLEVNHVDVFANLEELTLSKCIFTTWRQAQ---FHKLKI  171 (410)
Q Consensus        95 ~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~l~~L~~L~i~~~~~~~~~~~~---l~~L~~  171 (410)
                                .++|+.|+++++ .+..++..    .+              ++|++|++++|.+....+..   +++|+.
T Consensus        98 ----------~~~L~~L~l~~n-~l~~~~~~----~~--------------~~L~~L~l~~N~l~~~~~~~~~~l~~L~~  148 (317)
T 3o53_A           98 ----------GPSIETLHAANN-NISRVSCS----RG--------------QGKKNIYLANNKITMLRDLDEGCRSRVQY  148 (317)
T ss_dssp             ----------CTTCCEEECCSS-CCSEEEEC----CC--------------SSCEEEECCSSCCCSGGGBCTGGGSSEEE
T ss_pred             ----------CCCcCEEECCCC-ccCCcCcc----cc--------------CCCCEEECCCCCCCCccchhhhccCCCCE
Confidence                      389999999997 45544332    22              45666666666666554433   678888


Q ss_pred             EEEEeCCCccchhhhh-hhcccCceEEEeccccccccccchhhccccccCcccEEEeCCcccccccccCCCCcccccccc
Q 036454          172 LHFISDGSDFFQVGLL-QNIHNLEKLVLSTCEYKKIFSCEEVEEHAEGIAQIKSLKLKKLWLIEEHLWNPDSKLDSFLQN  250 (410)
Q Consensus       172 L~l~~~~~~~~~~~~l-~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~  250 (410)
                      |+++...+...+...+ ..+++|+.|++++|.+..+..       ...+++|++|+++++.-.  .+    ...+..+++
T Consensus       149 L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~-------~~~l~~L~~L~Ls~N~l~--~l----~~~~~~l~~  215 (317)
T 3o53_A          149 LDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVKG-------QVVFAKLKTLDLSSNKLA--FM----GPEFQSAAG  215 (317)
T ss_dssp             EECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEEEC-------CCCCTTCCEEECCSSCCC--EE----CGGGGGGTT
T ss_pred             EECCCCCCCcccHHHHhhccCcCCEEECCCCcCccccc-------ccccccCCEEECCCCcCC--cc----hhhhcccCc
Confidence            8886666665544444 578999999999999887754       445899999999985322  22    233678899


Q ss_pred             ceEEEEecccccccccccCccccCccCEEEEcccCCcccccchhhhhcCCCccEEEeccCcccchh
Q 036454          251 LEFLEVKKCALSLISLVPSSASFRNLTVLKVCNCWQLISLVTPQTAKTLVQLRELRVSECNRLEEI  316 (410)
Q Consensus       251 L~~L~l~~~~~~l~~l~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~  316 (410)
                      |++|++++|  .++.++..+..+++|++|++++++ +.......+...++.|+.+++.++..++..
T Consensus       216 L~~L~L~~N--~l~~l~~~~~~l~~L~~L~l~~N~-~~~~~~~~~~~~~~~L~~l~l~~~~~l~~~  278 (317)
T 3o53_A          216 VTWISLRNN--KLVLIEKALRFSQNLEHFDLRGNG-FHCGTLRDFFSKNQRVQTVAKQTVKKLTGQ  278 (317)
T ss_dssp             CSEEECTTS--CCCEECTTCCCCTTCCEEECTTCC-CBHHHHHHHHHTCHHHHHHHHHHHHHHHSS
T ss_pred             ccEEECcCC--cccchhhHhhcCCCCCEEEccCCC-ccCcCHHHHHhccccceEEECCCchhccCC
Confidence            999999999  677888888889999999998875 431112256688899999998876655443

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=99.75  E-value=2e-17  Score=160.29  Aligned_cols=223  Identities=18%  Similarity=0.149  Sum_probs=120.9

Q ss_pred             ccCCcEEEecCccccccccccCCccccccCcccEEEeccCcCccccCchhHHhhhhccceEeeccccCcceEeccCCCCC
Q 036454           18 ATQLRELHVFHLPKLTKLWNKDPQGKLIFRNLVVVRIFDCQSLKNIFPTSIARSLLRLETLSIKDCGSVEEIVANDGRGN   97 (410)
Q Consensus        18 ~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~   97 (410)
                      .++++.|+++++. ++.+.   +..+..+++|++|+++++ .+..+++..+ .++++|++|+++++. +..++.      
T Consensus        74 ~~~l~~L~L~~n~-i~~~~---~~~~~~l~~L~~L~Ls~n-~i~~~~~~~~-~~l~~L~~L~L~~n~-l~~~~~------  140 (452)
T 3zyi_A           74 PSNTRYLNLMENN-IQMIQ---ADTFRHLHHLEVLQLGRN-SIRQIEVGAF-NGLASLNTLELFDNW-LTVIPS------  140 (452)
T ss_dssp             CTTCSEEECCSSC-CCEEC---TTTTTTCTTCCEEECCSS-CCCEECTTTT-TTCTTCCEEECCSSC-CSBCCT------
T ss_pred             CCCccEEECcCCc-CceEC---HHHcCCCCCCCEEECCCC-ccCCcChhhc-cCcccCCEEECCCCc-CCccCh------
Confidence            3456666666552 22221   334455666666666655 4444433332 455666666666554 544443      


Q ss_pred             CCcccccCCCccEEeeccCCCccccccCcccCCCCCceEEEEccCCccccccEEEeeccCccccc-cc---ccccccEEE
Q 036454           98 DAATKFIFPSLTFLRLRDLPDLTTFYSGMHILECPELRKLEVNHVDVFANLEELTLSKCIFTTWR-QA---QFHKLKILH  173 (410)
Q Consensus        98 ~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~l~~L~~L~i~~~~~~~~~-~~---~l~~L~~L~  173 (410)
                        ..+..+++|+.|+++++ .+..++...+. .+++|++|++.+|              ...... ..   .+++|+.|+
T Consensus       141 --~~~~~l~~L~~L~L~~N-~l~~~~~~~~~-~l~~L~~L~l~~~--------------~~l~~i~~~~~~~l~~L~~L~  202 (452)
T 3zyi_A          141 --GAFEYLSKLRELWLRNN-PIESIPSYAFN-RVPSLMRLDLGEL--------------KKLEYISEGAFEGLFNLKYLN  202 (452)
T ss_dssp             --TTSSSCTTCCEEECCSC-CCCEECTTTTT-TCTTCCEEECCCC--------------TTCCEECTTTTTTCTTCCEEE
T ss_pred             --hhhcccCCCCEEECCCC-CcceeCHhHHh-cCCcccEEeCCCC--------------CCccccChhhccCCCCCCEEE
Confidence              12344556666666655 34444433332 4455555555443              222211 11   156677777


Q ss_pred             EEeCCCccchhhhhhhcccCceEEEeccccccccccchhhccccccCcccEEEeCCcccccccccCCCCccccccccceE
Q 036454          174 FISDGSDFFQVGLLQNIHNLEKLVLSTCEYKKIFSCEEVEEHAEGIAQIKSLKLKKLWLIEEHLWNPDSKLDSFLQNLEF  253 (410)
Q Consensus       174 l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~L~~  253 (410)
                      ++.+.+...+  .+..+++|+.|++++|.+..+.+     ..+.++++|+.|+++++.     +.......+..+++|+.
T Consensus       203 L~~n~l~~~~--~~~~l~~L~~L~Ls~N~l~~~~~-----~~~~~l~~L~~L~L~~n~-----l~~~~~~~~~~l~~L~~  270 (452)
T 3zyi_A          203 LGMCNIKDMP--NLTPLVGLEELEMSGNHFPEIRP-----GSFHGLSSLKKLWVMNSQ-----VSLIERNAFDGLASLVE  270 (452)
T ss_dssp             CTTSCCSSCC--CCTTCTTCCEEECTTSCCSEECG-----GGGTTCTTCCEEECTTSC-----CCEECTTTTTTCTTCCE
T ss_pred             CCCCcccccc--cccccccccEEECcCCcCcccCc-----ccccCccCCCEEEeCCCc-----CceECHHHhcCCCCCCE
Confidence            7555555444  35667777777777777666533     245667777777777732     21112334566777888


Q ss_pred             EEEecccccccccccC-ccccCccCEEEEcccC
Q 036454          254 LEVKKCALSLISLVPS-SASFRNLTVLKVCNCW  285 (410)
Q Consensus       254 L~l~~~~~~l~~l~~~-~~~~~~L~~L~l~~c~  285 (410)
                      |++++|  .++.++.. +..+++|++|++++++
T Consensus       271 L~L~~N--~l~~~~~~~~~~l~~L~~L~L~~Np  301 (452)
T 3zyi_A          271 LNLAHN--NLSSLPHDLFTPLRYLVELHLHHNP  301 (452)
T ss_dssp             EECCSS--CCSCCCTTSSTTCTTCCEEECCSSC
T ss_pred             EECCCC--cCCccChHHhccccCCCEEEccCCC
Confidence            888877  45555543 3567778888777653

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=99.75  E-value=2.1e-17  Score=159.69  Aligned_cols=225  Identities=17%  Similarity=0.178  Sum_probs=121.1

Q ss_pred             cccccCCcEEEecCccccccccccCCccccccCcccEEEeccCcCccccCchhHHhhhhccceEeeccccCcceEeccCC
Q 036454           15 SGAATQLRELHVFHLPKLTKLWNKDPQGKLIFRNLVVVRIFDCQSLKNIFPTSIARSLLRLETLSIKDCGSVEEIVANDG   94 (410)
Q Consensus        15 ~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~   94 (410)
                      -+..++++.|+++++. ++.+.   +..+..+++|++|++++| .+..+++..+ .++++|++|+++++. +..++.   
T Consensus        60 ~~~~~~l~~L~L~~n~-i~~~~---~~~~~~l~~L~~L~Ls~n-~i~~i~~~~~-~~l~~L~~L~L~~n~-l~~~~~---  129 (440)
T 3zyj_A           60 DGISTNTRLLNLHENQ-IQIIK---VNSFKHLRHLEILQLSRN-HIRTIEIGAF-NGLANLNTLELFDNR-LTTIPN---  129 (440)
T ss_dssp             SCCCTTCSEEECCSCC-CCEEC---TTTTSSCSSCCEEECCSS-CCCEECGGGG-TTCSSCCEEECCSSC-CSSCCT---
T ss_pred             CCCCCCCcEEEccCCc-CCeeC---HHHhhCCCCCCEEECCCC-cCCccChhhc-cCCccCCEEECCCCc-CCeeCH---
Confidence            3334556666666652 33221   234455666666666666 3444443332 456666666666654 554443   


Q ss_pred             CCCCCcccccCCCccEEeeccCCCccccccCcccCCCCCceEEEEccCCccccccEEEeeccCccc-ccccc---ccccc
Q 036454           95 RGNDAATKFIFPSLTFLRLRDLPDLTTFYSGMHILECPELRKLEVNHVDVFANLEELTLSKCIFTT-WRQAQ---FHKLK  170 (410)
Q Consensus        95 ~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~l~~L~~L~i~~~~~~~-~~~~~---l~~L~  170 (410)
                           ..+..+++|+.|+++++ .+..++...+. .+++|++|++.++              .... +....   +++|+
T Consensus       130 -----~~~~~l~~L~~L~L~~N-~i~~~~~~~~~-~l~~L~~L~l~~~--------------~~l~~i~~~~~~~l~~L~  188 (440)
T 3zyj_A          130 -----GAFVYLSKLKELWLRNN-PIESIPSYAFN-RIPSLRRLDLGEL--------------KRLSYISEGAFEGLSNLR  188 (440)
T ss_dssp             -----TTSCSCSSCCEEECCSC-CCCEECTTTTT-TCTTCCEEECCCC--------------TTCCEECTTTTTTCSSCC
T ss_pred             -----hHhhccccCceeeCCCC-cccccCHHHhh-hCcccCEeCCCCC--------------CCcceeCcchhhcccccC
Confidence                 13445566666666665 34444433332 4455555555443              2221 11111   56666


Q ss_pred             EEEEEeCCCccchhhhhhhcccCceEEEeccccccccccchhhccccccCcccEEEeCCcccccccccCCCCcccccccc
Q 036454          171 ILHFISDGSDFFQVGLLQNIHNLEKLVLSTCEYKKIFSCEEVEEHAEGIAQIKSLKLKKLWLIEEHLWNPDSKLDSFLQN  250 (410)
Q Consensus       171 ~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~  250 (410)
                      .|++..+.+..++  .+..+++|+.|++++|.+..+.+     ..+.++++|+.|+++++.     +.......+..+++
T Consensus       189 ~L~L~~n~l~~~~--~~~~l~~L~~L~Ls~N~l~~~~~-----~~~~~l~~L~~L~L~~n~-----l~~~~~~~~~~l~~  256 (440)
T 3zyj_A          189 YLNLAMCNLREIP--NLTPLIKLDELDLSGNHLSAIRP-----GSFQGLMHLQKLWMIQSQ-----IQVIERNAFDNLQS  256 (440)
T ss_dssp             EEECTTSCCSSCC--CCTTCSSCCEEECTTSCCCEECT-----TTTTTCTTCCEEECTTCC-----CCEECTTSSTTCTT
T ss_pred             eecCCCCcCcccc--ccCCCcccCEEECCCCccCccCh-----hhhccCccCCEEECCCCc-----eeEEChhhhcCCCC
Confidence            6666554555544  35667777777777776665533     235566777777777632     21112334566777


Q ss_pred             ceEEEEecccccccccccC-ccccCccCEEEEccc
Q 036454          251 LEFLEVKKCALSLISLVPS-SASFRNLTVLKVCNC  284 (410)
Q Consensus       251 L~~L~l~~~~~~l~~l~~~-~~~~~~L~~L~l~~c  284 (410)
                      |++|++++|  .++.++.. +..+++|++|+++++
T Consensus       257 L~~L~L~~N--~l~~~~~~~~~~l~~L~~L~L~~N  289 (440)
T 3zyj_A          257 LVEINLAHN--NLTLLPHDLFTPLHHLERIHLHHN  289 (440)
T ss_dssp             CCEEECTTS--CCCCCCTTTTSSCTTCCEEECCSS
T ss_pred             CCEEECCCC--CCCccChhHhccccCCCEEEcCCC
Confidence            777777777  45555433 355677777777664

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=99.75  E-value=4.2e-17  Score=157.49  Aligned_cols=222  Identities=18%  Similarity=0.213  Sum_probs=151.1

Q ss_pred             CcccEEEeccCcCccccCchhHHhhhhccceEeeccccCcceEeccCCCCCCCcccccCCCccEEeeccCCCccccccCc
Q 036454           47 RNLVVVRIFDCQSLKNIFPTSIARSLLRLETLSIKDCGSVEEIVANDGRGNDAATKFIFPSLTFLRLRDLPDLTTFYSGM  126 (410)
Q Consensus        47 ~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~  126 (410)
                      +++++|+++++ .+..+++..+ .++++|++|+++++. +..++.        ..+..+++|+.|+++++ .++.++...
T Consensus        64 ~~l~~L~L~~n-~i~~~~~~~~-~~l~~L~~L~Ls~n~-i~~i~~--------~~~~~l~~L~~L~L~~n-~l~~~~~~~  131 (440)
T 3zyj_A           64 TNTRLLNLHEN-QIQIIKVNSF-KHLRHLEILQLSRNH-IRTIEI--------GAFNGLANLNTLELFDN-RLTTIPNGA  131 (440)
T ss_dssp             TTCSEEECCSC-CCCEECTTTT-SSCSSCCEEECCSSC-CCEECG--------GGGTTCSSCCEEECCSS-CCSSCCTTT
T ss_pred             CCCcEEEccCC-cCCeeCHHHh-hCCCCCCEEECCCCc-CCccCh--------hhccCCccCCEEECCCC-cCCeeCHhH
Confidence            56777777766 4555544333 466777777777665 555543        14455667777777766 455444432


Q ss_pred             ccCCCCCceEEEEccCCccccccEEEeeccCcccccccc---cccccEEEE-EeCCCccchhhhhhhcccCceEEEeccc
Q 036454          127 HILECPELRKLEVNHVDVFANLEELTLSKCIFTTWRQAQ---FHKLKILHF-ISDGSDFFQVGLLQNIHNLEKLVLSTCE  202 (410)
Q Consensus       127 ~~~~~~~L~~L~l~~~~~l~~L~~L~i~~~~~~~~~~~~---l~~L~~L~l-~~~~~~~~~~~~l~~l~~L~~L~l~~~~  202 (410)
                      +.               .+++|++|++++|.+..+++..   +++|+.|++ .+.....++...+.++++|+.|++++|.
T Consensus       132 ~~---------------~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~  196 (440)
T 3zyj_A          132 FV---------------YLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCN  196 (440)
T ss_dssp             SC---------------SCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSC
T ss_pred             hh---------------ccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCc
Confidence            21               2256667777777666555433   788999999 4467777777778889999999999998


Q ss_pred             cccccccchhhccccccCcccEEEeCCcccccccccCCCCccccccccceEEEEecccccccccc-cCccccCccCEEEE
Q 036454          203 YKKIFSCEEVEEHAEGIAQIKSLKLKKLWLIEEHLWNPDSKLDSFLQNLEFLEVKKCALSLISLV-PSSASFRNLTVLKV  281 (410)
Q Consensus       203 ~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~l~~l~-~~~~~~~~L~~L~l  281 (410)
                      +..+..       +..+++|+.|+++++...  .+   ....+..+++|++|++++|  .++.++ ..+..+++|++|++
T Consensus       197 l~~~~~-------~~~l~~L~~L~Ls~N~l~--~~---~~~~~~~l~~L~~L~L~~n--~l~~~~~~~~~~l~~L~~L~L  262 (440)
T 3zyj_A          197 LREIPN-------LTPLIKLDELDLSGNHLS--AI---RPGSFQGLMHLQKLWMIQS--QIQVIERNAFDNLQSLVEINL  262 (440)
T ss_dssp             CSSCCC-------CTTCSSCCEEECTTSCCC--EE---CTTTTTTCTTCCEEECTTC--CCCEECTTSSTTCTTCCEEEC
T ss_pred             Cccccc-------cCCCcccCEEECCCCccC--cc---ChhhhccCccCCEEECCCC--ceeEEChhhhcCCCCCCEEEC
Confidence            877654       667889999999985222  22   2345778899999999998  455543 44667889999999


Q ss_pred             cccCCcccccchhhhhcCCCccEEEeccCc
Q 036454          282 CNCWQLISLVTPQTAKTLVQLRELRVSECN  311 (410)
Q Consensus       282 ~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~  311 (410)
                      +++ +++.++. .....+++|+.|++++++
T Consensus       263 ~~N-~l~~~~~-~~~~~l~~L~~L~L~~Np  290 (440)
T 3zyj_A          263 AHN-NLTLLPH-DLFTPLHHLERIHLHHNP  290 (440)
T ss_dssp             TTS-CCCCCCT-TTTSSCTTCCEEECCSSC
T ss_pred             CCC-CCCccCh-hHhccccCCCEEEcCCCC
Confidence            876 5766653 345678899999998743

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=99.74  E-value=4.8e-17  Score=157.64  Aligned_cols=222  Identities=20%  Similarity=0.183  Sum_probs=151.5

Q ss_pred             CcccEEEeccCcCccccCchhHHhhhhccceEeeccccCcceEeccCCCCCCCcccccCCCccEEeeccCCCccccccCc
Q 036454           47 RNLVVVRIFDCQSLKNIFPTSIARSLLRLETLSIKDCGSVEEIVANDGRGNDAATKFIFPSLTFLRLRDLPDLTTFYSGM  126 (410)
Q Consensus        47 ~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~  126 (410)
                      +++++|+++++ .+..+++..+ .++++|++|+++++. +..++.        ..+..+++|+.|+++++ .+..++...
T Consensus        75 ~~l~~L~L~~n-~i~~~~~~~~-~~l~~L~~L~Ls~n~-i~~~~~--------~~~~~l~~L~~L~L~~n-~l~~~~~~~  142 (452)
T 3zyi_A           75 SNTRYLNLMEN-NIQMIQADTF-RHLHHLEVLQLGRNS-IRQIEV--------GAFNGLASLNTLELFDN-WLTVIPSGA  142 (452)
T ss_dssp             TTCSEEECCSS-CCCEECTTTT-TTCTTCCEEECCSSC-CCEECT--------TTTTTCTTCCEEECCSS-CCSBCCTTT
T ss_pred             CCccEEECcCC-cCceECHHHc-CCCCCCCEEECCCCc-cCCcCh--------hhccCcccCCEEECCCC-cCCccChhh
Confidence            56777777766 4555544433 467777777777665 555543        14455677777777766 455444432


Q ss_pred             ccCCCCCceEEEEccCCccccccEEEeeccCcccccccc---cccccEEEE-EeCCCccchhhhhhhcccCceEEEeccc
Q 036454          127 HILECPELRKLEVNHVDVFANLEELTLSKCIFTTWRQAQ---FHKLKILHF-ISDGSDFFQVGLLQNIHNLEKLVLSTCE  202 (410)
Q Consensus       127 ~~~~~~~L~~L~l~~~~~l~~L~~L~i~~~~~~~~~~~~---l~~L~~L~l-~~~~~~~~~~~~l~~l~~L~~L~l~~~~  202 (410)
                      +. .              +++|++|++++|.+..+++..   +++|+.|++ .+.....++...+.++++|+.|++++|.
T Consensus       143 ~~-~--------------l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~  207 (452)
T 3zyi_A          143 FE-Y--------------LSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCN  207 (452)
T ss_dssp             SS-S--------------CTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSC
T ss_pred             hc-c--------------cCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCc
Confidence            21 2              356666666666666555433   788999999 4577777777778889999999999998


Q ss_pred             cccccccchhhccccccCcccEEEeCCcccccccccCCCCccccccccceEEEEeccccccccc-ccCccccCccCEEEE
Q 036454          203 YKKIFSCEEVEEHAEGIAQIKSLKLKKLWLIEEHLWNPDSKLDSFLQNLEFLEVKKCALSLISL-VPSSASFRNLTVLKV  281 (410)
Q Consensus       203 ~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~l~~l-~~~~~~~~~L~~L~l  281 (410)
                      +..+..       +..+++|+.|+++++.     +.......+..+++|++|++++|  .+..+ +..+..+++|++|++
T Consensus       208 l~~~~~-------~~~l~~L~~L~Ls~N~-----l~~~~~~~~~~l~~L~~L~L~~n--~l~~~~~~~~~~l~~L~~L~L  273 (452)
T 3zyi_A          208 IKDMPN-------LTPLVGLEELEMSGNH-----FPEIRPGSFHGLSSLKKLWVMNS--QVSLIERNAFDGLASLVELNL  273 (452)
T ss_dssp             CSSCCC-------CTTCTTCCEEECTTSC-----CSEECGGGGTTCTTCCEEECTTS--CCCEECTTTTTTCTTCCEEEC
T ss_pred             cccccc-------ccccccccEEECcCCc-----CcccCcccccCccCCCEEEeCCC--cCceECHHHhcCCCCCCEEEC
Confidence            877644       6678899999998843     32222455778889999999998  45554 345677889999999


Q ss_pred             cccCCcccccchhhhhcCCCccEEEeccCc
Q 036454          282 CNCWQLISLVTPQTAKTLVQLRELRVSECN  311 (410)
Q Consensus       282 ~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~  311 (410)
                      +++ +++.++. .....+++|++|++++++
T Consensus       274 ~~N-~l~~~~~-~~~~~l~~L~~L~L~~Np  301 (452)
T 3zyi_A          274 AHN-NLSSLPH-DLFTPLRYLVELHLHHNP  301 (452)
T ss_dssp             CSS-CCSCCCT-TSSTTCTTCCEEECCSSC
T ss_pred             CCC-cCCccCh-HHhccccCCCEEEccCCC
Confidence            877 5766653 344678899999998753

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=99.74  E-value=3.6e-17  Score=153.33  Aligned_cols=270  Identities=16%  Similarity=0.154  Sum_probs=179.9

Q ss_pred             ccCCcEEEecCccccccccccCCccccccCcccEEEeccCcCccccCchhHHhhhhccceEeeccccCcceEeccCCCCC
Q 036454           18 ATQLRELHVFHLPKLTKLWNKDPQGKLIFRNLVVVRIFDCQSLKNIFPTSIARSLLRLETLSIKDCGSVEEIVANDGRGN   97 (410)
Q Consensus        18 ~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~   97 (410)
                      ++.....+.++. .++.+    |.+  ..++|++|+++++ .+..+++..+ .++++|++|+++++. +..++.      
T Consensus        30 C~~~~~c~~~~~-~l~~i----P~~--~~~~L~~L~l~~n-~i~~~~~~~~-~~l~~L~~L~L~~n~-l~~~~~------   93 (353)
T 2z80_A           30 CDRNGICKGSSG-SLNSI----PSG--LTEAVKSLDLSNN-RITYISNSDL-QRCVNLQALVLTSNG-INTIEE------   93 (353)
T ss_dssp             ECTTSEEECCST-TCSSC----CTT--CCTTCCEEECTTS-CCCEECTTTT-TTCTTCCEEECTTSC-CCEECT------
T ss_pred             CCCCeEeeCCCC-Ccccc----ccc--ccccCcEEECCCC-cCcccCHHHh-ccCCCCCEEECCCCc-cCccCH------
Confidence            444445555443 33333    444  2357888888877 5666655333 578888888888775 666653      


Q ss_pred             CCcccccCCCccEEeeccCCCccccccCcccCCCCCceEEEEccCCccccccEEEeeccCcccccc-c---ccccccEEE
Q 036454           98 DAATKFIFPSLTFLRLRDLPDLTTFYSGMHILECPELRKLEVNHVDVFANLEELTLSKCIFTTWRQ-A---QFHKLKILH  173 (410)
Q Consensus        98 ~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~l~~L~~L~i~~~~~~~~~~-~---~l~~L~~L~  173 (410)
                        ..+..+++|++|+++++ .++.++...+. .+              ++|++|++++|.+..++. .   .+++|+.|+
T Consensus        94 --~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~-~l--------------~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~  155 (353)
T 2z80_A           94 --DSFSSLGSLEHLDLSYN-YLSNLSSSWFK-PL--------------SSLTFLNLLGNPYKTLGETSLFSHLTKLQILR  155 (353)
T ss_dssp             --TTTTTCTTCCEEECCSS-CCSSCCHHHHT-TC--------------TTCSEEECTTCCCSSSCSSCSCTTCTTCCEEE
T ss_pred             --hhcCCCCCCCEEECCCC-cCCcCCHhHhC-CC--------------ccCCEEECCCCCCcccCchhhhccCCCCcEEE
Confidence              14566788888888876 45544433221 22              566666777776665554 1   188999999


Q ss_pred             EEeC-CCccchhhhhhhcccCceEEEeccccccccccchhhccccccCcccEEEeCCcccccccccCCCCccccccccce
Q 036454          174 FISD-GSDFFQVGLLQNIHNLEKLVLSTCEYKKIFSCEEVEEHAEGIAQIKSLKLKKLWLIEEHLWNPDSKLDSFLQNLE  252 (410)
Q Consensus       174 l~~~-~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~L~  252 (410)
                      +... .....+...+.++++|+.|++++|.+..+.+     ..+..+++|++|+++++...  .+   .......+++|+
T Consensus       156 l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~-----~~l~~l~~L~~L~l~~n~l~--~~---~~~~~~~~~~L~  225 (353)
T 2z80_A          156 VGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEP-----KSLKSIQNVSHLILHMKQHI--LL---LEIFVDVTSSVE  225 (353)
T ss_dssp             EEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECT-----TTTTTCSEEEEEEEECSCST--TH---HHHHHHHTTTEE
T ss_pred             CCCCccccccCHHHccCCCCCCEEECCCCCcCccCH-----HHHhccccCCeecCCCCccc--cc---hhhhhhhccccc
Confidence            9554 5777766778899999999999998776633     24667899999999984321  11   112345689999


Q ss_pred             EEEEeccccccccccc----CccccCccCEEEEcccCCccccc---chhhhhcCCCccEEEeccCcccchhcccc-CCCC
Q 036454          253 FLEVKKCALSLISLVP----SSASFRNLTVLKVCNCWQLISLV---TPQTAKTLVQLRELRVSECNRLEEIVAND-GDAD  324 (410)
Q Consensus       253 ~L~l~~~~~~l~~l~~----~~~~~~~L~~L~l~~c~~l~~~~---~~~~~~~l~~L~~L~l~~c~~l~~~~~~~-~~~~  324 (410)
                      +|++++|.  ++..+.    .......++.+++.++. +....   .......+++|++|+++++ .++.++... +.  
T Consensus       226 ~L~L~~n~--l~~~~~~~l~~~~~~~~l~~l~L~~~~-l~~~~l~~l~~~l~~l~~L~~L~Ls~N-~l~~i~~~~~~~--  299 (353)
T 2z80_A          226 CLELRDTD--LDTFHFSELSTGETNSLIKKFTFRNVK-ITDESLFQVMKLLNQISGLLELEFSRN-QLKSVPDGIFDR--  299 (353)
T ss_dssp             EEEEESCB--CTTCCCC------CCCCCCEEEEESCB-CCHHHHHHHHHHHHTCTTCCEEECCSS-CCCCCCTTTTTT--
T ss_pred             EEECCCCc--cccccccccccccccchhhcccccccc-ccCcchhhhHHHHhcccCCCEEECCCC-CCCccCHHHHhc--
Confidence            99999994  544331    12345678888887762 33211   1134578999999999986 666777664 56  


Q ss_pred             ccccccccceeecCcCc
Q 036454          325 DEIVFSKLKWLFLESSE  341 (410)
Q Consensus       325 ~~~~~~~L~~L~l~~c~  341 (410)
                          +++|++|++++++
T Consensus       300 ----l~~L~~L~L~~N~  312 (353)
T 2z80_A          300 ----LTSLQKIWLHTNP  312 (353)
T ss_dssp             ----CTTCCEEECCSSC
T ss_pred             ----CCCCCEEEeeCCC
Confidence                8999999999975

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.73  E-value=1.2e-17  Score=163.06  Aligned_cols=240  Identities=13%  Similarity=0.082  Sum_probs=139.1

Q ss_pred             ccCcccEEEeccCcCccccCchhHHhhhhccceEeeccccCcceEeccCCCCCCCcccccCCCccEEeeccCCCcccccc
Q 036454           45 IFRNLVVVRIFDCQSLKNIFPTSIARSLLRLETLSIKDCGSVEEIVANDGRGNDAATKFIFPSLTFLRLRDLPDLTTFYS  124 (410)
Q Consensus        45 ~l~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~  124 (410)
                      .+++|++|++++| .+..+++..+ +++++|++|+++++. +...+          .+..+++|+.|+++++ .+..++.
T Consensus        32 ~~~~L~~L~Ls~n-~l~~~~~~~~-~~l~~L~~L~Ls~N~-l~~~~----------~l~~l~~L~~L~Ls~N-~l~~l~~   97 (487)
T 3oja_A           32 SAWNVKELDLSGN-PLSQISAADL-APFTKLELLNLSSNV-LYETL----------DLESLSTLRTLDLNNN-YVQELLV   97 (487)
T ss_dssp             TGGGCCEEECCSS-CCCCCCGGGG-TTCTTCCEEECTTSC-CEEEE----------ECTTCTTCCEEECCSS-EEEEEEE
T ss_pred             cCCCccEEEeeCC-cCCCCCHHHH-hCCCCCCEEEeeCCC-CCCCc----------ccccCCCCCEEEecCC-cCCCCCC
Confidence            3446666666666 4444444333 466666666666654 44333          2344566666666665 3333221


Q ss_pred             CcccCCCCCceEEEEccCCccccccEEEeeccCcccccccccccccEEEEEeCCCccchhhhhhhcccCceEEEeccccc
Q 036454          125 GMHILECPELRKLEVNHVDVFANLEELTLSKCIFTTWRQAQFHKLKILHFISDGSDFFQVGLLQNIHNLEKLVLSTCEYK  204 (410)
Q Consensus       125 ~~~~~~~~~L~~L~l~~~~~l~~L~~L~i~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~  204 (410)
                            .              ++|+.|++++|.+...++..+++|+.|++..+.+...+...+.++++|+.|++++|.+.
T Consensus        98 ------~--------------~~L~~L~L~~N~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~  157 (487)
T 3oja_A           98 ------G--------------PSIETLHAANNNISRVSCSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEID  157 (487)
T ss_dssp             ------C--------------TTCCEEECCSSCCCCEEECCCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCC
T ss_pred             ------C--------------CCcCEEECcCCcCCCCCccccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCC
Confidence                  1              34444444444444444444555666666544444444445567778888888877766


Q ss_pred             cccccchhhccccccCcccEEEeCCcccccccccCCCCccccccccceEEEEecccccccccccCccccCccCEEEEccc
Q 036454          205 KIFSCEEVEEHAEGIAQIKSLKLKKLWLIEEHLWNPDSKLDSFLQNLEFLEVKKCALSLISLVPSSASFRNLTVLKVCNC  284 (410)
Q Consensus       205 ~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~l~~l~~~~~~~~~L~~L~l~~c  284 (410)
                      ...+    ......+++|++|+++++.-.  .+     .....+++|+.|++++|  .++.+++.+..+++|++|+++++
T Consensus       158 ~~~~----~~l~~~l~~L~~L~Ls~N~l~--~~-----~~~~~l~~L~~L~Ls~N--~l~~~~~~~~~l~~L~~L~Ls~N  224 (487)
T 3oja_A          158 TVNF----AELAASSDTLEHLNLQYNFIY--DV-----KGQVVFAKLKTLDLSSN--KLAFMGPEFQSAAGVTWISLRNN  224 (487)
T ss_dssp             EEEG----GGGGGGTTTCCEEECTTSCCC--EE-----ECCCCCTTCCEEECCSS--CCCEECGGGGGGTTCSEEECTTS
T ss_pred             CcCh----HHHhhhCCcccEEecCCCccc--cc-----cccccCCCCCEEECCCC--CCCCCCHhHcCCCCccEEEecCC
Confidence            5433    011125678888888774322  11     12334778888888888  56667666777788888888776


Q ss_pred             CCcccccchhhhhcCCCccEEEeccCccc-chhccccCCCCccccccccceeecCcC
Q 036454          285 WQLISLVTPQTAKTLVQLRELRVSECNRL-EEIVANDGDADDEIVFSKLKWLFLESS  340 (410)
Q Consensus       285 ~~l~~~~~~~~~~~l~~L~~L~l~~c~~l-~~~~~~~~~~~~~~~~~~L~~L~l~~c  340 (410)
                       .+..++.  ....+++|+.|++++++-. ..++..+..      ++.|+.+.+..+
T Consensus       225 -~l~~lp~--~l~~l~~L~~L~l~~N~l~c~~~~~~~~~------l~~L~~l~~~~~  272 (487)
T 3oja_A          225 -KLVLIEK--ALRFSQNLEHFDLRGNGFHCGTLRDFFSK------NQRVQTVAKQTV  272 (487)
T ss_dssp             -CCCEECT--TCCCCTTCCEEECTTCCBCHHHHHHHHTT------CHHHHHHHHHHH
T ss_pred             -cCcccch--hhccCCCCCEEEcCCCCCcCcchHHHHHh------CCCCcEEecccc
Confidence             4666553  3566778888888876544 244444555      677777776543

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=99.73  E-value=5.8e-17  Score=148.74  Aligned_cols=234  Identities=16%  Similarity=0.159  Sum_probs=150.9

Q ss_pred             CccccccccccCCcEEEecCccccccccccCCcc-ccccCcccEEEeccCcCccccC--chhHHhhhhccceEeeccccC
Q 036454            9 NSEETHSGAATQLRELHVFHLPKLTKLWNKDPQG-KLIFRNLVVVRIFDCQSLKNIF--PTSIARSLLRLETLSIKDCGS   85 (410)
Q Consensus         9 ~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~-~~~l~~L~~L~l~~~~~l~~~~--~~~~~~~l~~L~~L~l~~~~~   85 (410)
                      ...+.+.+..++|++|+++++. ++.+    |.. +..+++|++|+++++ .+....  +..+ ..+++|++|+++++. 
T Consensus        18 ~l~~ip~~~~~~l~~L~L~~n~-l~~i----~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~-~~~~~L~~L~Ls~n~-   89 (306)
T 2z66_A           18 GLTSVPTGIPSSATRLELESNK-LQSL----PHGVFDKLTQLTKLSLSSN-GLSFKGCCSQSD-FGTTSLKYLDLSFNG-   89 (306)
T ss_dssp             CCSSCCSCCCTTCCEEECCSSC-CCCC----CTTTTTTCTTCSEEECCSS-CCCEEEEEEHHH-HSCSCCCEEECCSCS-
T ss_pred             CcccCCCCCCCCCCEEECCCCc-cCcc----CHhHhhccccCCEEECCCC-ccCcccCccccc-ccccccCEEECCCCc-
Confidence            3344455556788899988873 4433    433 468888999999887 444331  2223 468889999998886 


Q ss_pred             cceEeccCCCCCCCcccccCCCccEEeeccCCCccccccCcccCCCCCceEEEEccCCccccccEEEeeccCcccccccc
Q 036454           86 VEEIVANDGRGNDAATKFIFPSLTFLRLRDLPDLTTFYSGMHILECPELRKLEVNHVDVFANLEELTLSKCIFTTWRQAQ  165 (410)
Q Consensus        86 l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~l~~L~~L~i~~~~~~~~~~~~  165 (410)
                      +..++.         .+..+++|++|+++++ .+..++.......+++              |+.|++++|.+....+..
T Consensus        90 i~~l~~---------~~~~l~~L~~L~l~~n-~l~~~~~~~~~~~l~~--------------L~~L~l~~n~l~~~~~~~  145 (306)
T 2z66_A           90 VITMSS---------NFLGLEQLEHLDFQHS-NLKQMSEFSVFLSLRN--------------LIYLDISHTHTRVAFNGI  145 (306)
T ss_dssp             EEEEEE---------EEETCTTCCEEECTTS-EEESSTTTTTTTTCTT--------------CCEEECTTSCCEECSTTT
T ss_pred             cccChh---------hcCCCCCCCEEECCCC-cccccccchhhhhccC--------------CCEEECCCCcCCccchhh
Confidence            777776         5677888999988887 4544433111123444              455555555444433322


Q ss_pred             ---cccccEEEEEeCCCcc-chhhhhhhcccCceEEEeccccccccccchhhccccccCcccEEEeCCcccccccccCCC
Q 036454          166 ---FHKLKILHFISDGSDF-FQVGLLQNIHNLEKLVLSTCEYKKIFSCEEVEEHAEGIAQIKSLKLKKLWLIEEHLWNPD  241 (410)
Q Consensus       166 ---l~~L~~L~l~~~~~~~-~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~  241 (410)
                         +++|+.|++....... .....+..+++|+.|++++|.+..+.+     ..+..+++|++|+++++.     +....
T Consensus       146 ~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-----~~~~~l~~L~~L~L~~N~-----l~~~~  215 (306)
T 2z66_A          146 FNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSP-----TAFNSLSSLQVLNMSHNN-----FFSLD  215 (306)
T ss_dssp             TTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECT-----TTTTTCTTCCEEECTTSC-----CSBCC
T ss_pred             cccCcCCCEEECCCCccccccchhHHhhCcCCCEEECCCCCcCCcCH-----HHhcCCCCCCEEECCCCc-----cCccC
Confidence               5677777774443332 222456788999999999988777633     245677899999998843     32222


Q ss_pred             CccccccccceEEEEecccccccccccCcccc-CccCEEEEcccC
Q 036454          242 SKLDSFLQNLEFLEVKKCALSLISLVPSSASF-RNLTVLKVCNCW  285 (410)
Q Consensus       242 ~~~~~~~~~L~~L~l~~~~~~l~~l~~~~~~~-~~L~~L~l~~c~  285 (410)
                      ...+..+++|++|++++|. .....+..+..+ ++|++|++++++
T Consensus       216 ~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~~~~~L~~L~L~~N~  259 (306)
T 2z66_A          216 TFPYKCLNSLQVLDYSLNH-IMTSKKQELQHFPSSLAFLNLTQND  259 (306)
T ss_dssp             SGGGTTCTTCCEEECTTSC-CCBCSSSSCCCCCTTCCEEECTTCC
T ss_pred             hhhccCcccCCEeECCCCC-CcccCHHHHHhhhccCCEEEccCCC
Confidence            3346778999999999995 333344455666 489999998864

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=99.73  E-value=1.4e-17  Score=151.36  Aligned_cols=202  Identities=17%  Similarity=0.140  Sum_probs=124.1

Q ss_pred             cCcccEEEeccCcCccccCchhHHhhhhccceEeeccccCcceEeccCCCCCCCcccccCCCccEEeeccCCCccccccC
Q 036454           46 FRNLVVVRIFDCQSLKNIFPTSIARSLLRLETLSIKDCGSVEEIVANDGRGNDAATKFIFPSLTFLRLRDLPDLTTFYSG  125 (410)
Q Consensus        46 l~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~  125 (410)
                      .++|++|+++++ .+..+++..+ .++++|++|+++++. +..+..        ..+..+++|++|+++++..+..++..
T Consensus        31 ~~~l~~L~l~~n-~i~~~~~~~~-~~~~~L~~L~l~~n~-l~~~~~--------~~~~~l~~L~~L~l~~n~~l~~~~~~   99 (285)
T 1ozn_A           31 PAASQRIFLHGN-RISHVPAASF-RACRNLTILWLHSNV-LARIDA--------AAFTGLALLEQLDLSDNAQLRSVDPA   99 (285)
T ss_dssp             CTTCSEEECTTS-CCCEECTTTT-TTCTTCCEEECCSSC-CCEECT--------TTTTTCTTCCEEECCSCTTCCCCCTT
T ss_pred             CCCceEEEeeCC-cCCccCHHHc-ccCCCCCEEECCCCc-cceeCH--------hhcCCccCCCEEeCCCCCCccccCHH
Confidence            457777777776 4555544333 567777777777764 555532        14556677777777776445554333


Q ss_pred             cccCCCCCceEEEEccCCccccccEEEeeccCcccccccc---cccccEEEEEeCCCccchhhhhhhcccCceEEEeccc
Q 036454          126 MHILECPELRKLEVNHVDVFANLEELTLSKCIFTTWRQAQ---FHKLKILHFISDGSDFFQVGLLQNIHNLEKLVLSTCE  202 (410)
Q Consensus       126 ~~~~~~~~L~~L~l~~~~~l~~L~~L~i~~~~~~~~~~~~---l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~  202 (410)
                      .+. .+              ++|++|++++|.+....+..   +++|+.|++....+...+...+..+++|+.|++++|.
T Consensus       100 ~~~-~l--------------~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~  164 (285)
T 1ozn_A          100 TFH-GL--------------GRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNR  164 (285)
T ss_dssp             TTT-TC--------------TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred             Hhc-CC--------------cCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCc
Confidence            221 23              33444444444444333322   5666666665555555555556778888888888887


Q ss_pred             cccccccchhhccccccCcccEEEeCCcccccccccCCCCccccccccceEEEEeccccccccccc-CccccCccCEEEE
Q 036454          203 YKKIFSCEEVEEHAEGIAQIKSLKLKKLWLIEEHLWNPDSKLDSFLQNLEFLEVKKCALSLISLVP-SSASFRNLTVLKV  281 (410)
Q Consensus       203 ~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~l~~l~~-~~~~~~~L~~L~l  281 (410)
                      +..+..     ..+..+++|++|+++++...     ......+..+++|++|++++|  .++.+++ .+..+++|++|++
T Consensus       165 l~~~~~-----~~~~~l~~L~~L~l~~n~l~-----~~~~~~~~~l~~L~~L~l~~n--~l~~~~~~~~~~l~~L~~L~l  232 (285)
T 1ozn_A          165 ISSVPE-----RAFRGLHSLDRLLLHQNRVA-----HVHPHAFRDLGRLMTLYLFAN--NLSALPTEALAPLRALQYLRL  232 (285)
T ss_dssp             CCEECT-----TTTTTCTTCCEEECCSSCCC-----EECTTTTTTCTTCCEEECCSS--CCSCCCHHHHTTCTTCCEEEC
T ss_pred             ccccCH-----HHhcCccccCEEECCCCccc-----ccCHhHccCcccccEeeCCCC--cCCcCCHHHcccCcccCEEec
Confidence            766543     13556788888888874322     112345667888888888888  4555553 3567888888888


Q ss_pred             cccC
Q 036454          282 CNCW  285 (410)
Q Consensus       282 ~~c~  285 (410)
                      ++++
T Consensus       233 ~~N~  236 (285)
T 1ozn_A          233 NDNP  236 (285)
T ss_dssp             CSSC
T ss_pred             cCCC
Confidence            8764

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=99.71  E-value=1.2e-16  Score=146.56  Aligned_cols=242  Identities=19%  Similarity=0.130  Sum_probs=114.0

Q ss_pred             cEEEeccCcCccccCchhHHhhhhccceEeeccccCcceEeccCCCCCCCcccccCCCccEEeeccCCCccccc---cCc
Q 036454           50 VVVRIFDCQSLKNIFPTSIARSLLRLETLSIKDCGSVEEIVANDGRGNDAATKFIFPSLTFLRLRDLPDLTTFY---SGM  126 (410)
Q Consensus        50 ~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~---~~~  126 (410)
                      +.++.++. .++.+|..    -.++|++|+++++. ++.++.        ..+..+++|+.|+++++ .+....   ...
T Consensus        10 ~~l~c~~~-~l~~ip~~----~~~~l~~L~L~~n~-l~~i~~--------~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~   74 (306)
T 2z66_A           10 TEIRCNSK-GLTSVPTG----IPSSATRLELESNK-LQSLPH--------GVFDKLTQLTKLSLSSN-GLSFKGCCSQSD   74 (306)
T ss_dssp             TEEECCSS-CCSSCCSC----CCTTCCEEECCSSC-CCCCCT--------TTTTTCTTCSEEECCSS-CCCEEEEEEHHH
T ss_pred             CEEEcCCC-CcccCCCC----CCCCCCEEECCCCc-cCccCH--------hHhhccccCCEEECCCC-ccCcccCccccc
Confidence            45666655 55666442    34688888888876 776664        13467788888888887 333221   111


Q ss_pred             ccCCCCCceEEEEccCCccccccEEEeeccCcccccccccccccEEEEEeCCCccchhhhhhhcccCceEEEeccccccc
Q 036454          127 HILECPELRKLEVNHVDVFANLEELTLSKCIFTTWRQAQFHKLKILHFISDGSDFFQVGLLQNIHNLEKLVLSTCEYKKI  206 (410)
Q Consensus       127 ~~~~~~~L~~L~l~~~~~l~~L~~L~i~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~  206 (410)
                        ..++              +|++|++++|.+..++..                      +..+++|+.|+++++.+..+
T Consensus        75 --~~~~--------------~L~~L~Ls~n~i~~l~~~----------------------~~~l~~L~~L~l~~n~l~~~  116 (306)
T 2z66_A           75 --FGTT--------------SLKYLDLSFNGVITMSSN----------------------FLGLEQLEHLDFQHSNLKQM  116 (306)
T ss_dssp             --HSCS--------------CCCEEECCSCSEEEEEEE----------------------EETCTTCCEEECTTSEEESS
T ss_pred             --cccc--------------ccCEEECCCCccccChhh----------------------cCCCCCCCEEECCCCccccc
Confidence              1233              444444444443322221                      23344555555554443333


Q ss_pred             cccchhhccccccCcccEEEeCCcccccccccCCCCccccccccceEEEEecccccccc--cccCccccCccCEEEEccc
Q 036454          207 FSCEEVEEHAEGIAQIKSLKLKKLWLIEEHLWNPDSKLDSFLQNLEFLEVKKCALSLIS--LVPSSASFRNLTVLKVCNC  284 (410)
Q Consensus       207 ~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~l~~--l~~~~~~~~~L~~L~l~~c  284 (410)
                      ..    ...+..+++|++|+++++... .    .....+..+++|++|++++|.  +..  ++..+..+++|++|+++++
T Consensus       117 ~~----~~~~~~l~~L~~L~l~~n~l~-~----~~~~~~~~l~~L~~L~l~~n~--l~~~~~~~~~~~l~~L~~L~Ls~n  185 (306)
T 2z66_A          117 SE----FSVFLSLRNLIYLDISHTHTR-V----AFNGIFNGLSSLEVLKMAGNS--FQENFLPDIFTELRNLTFLDLSQC  185 (306)
T ss_dssp             TT----TTTTTTCTTCCEEECTTSCCE-E----CSTTTTTTCTTCCEEECTTCE--EGGGEECSCCTTCTTCCEEECTTS
T ss_pred             cc----chhhhhccCCCEEECCCCcCC-c----cchhhcccCcCCCEEECCCCc--cccccchhHHhhCcCCCEEECCCC
Confidence            21    011334455555555543211 1    112223445555555555552  222  3344445555555555544


Q ss_pred             CCcccccchhhhhcCCCccEEEeccCcccchh-ccccCCCCccccccccceeecCcCcccceecCCCcccCCC-CccEEE
Q 036454          285 WQLISLVTPQTAKTLVQLRELRVSECNRLEEI-VANDGDADDEIVFSKLKWLFLESSESITSFCSGNYAFSFP-SLEDLI  362 (410)
Q Consensus       285 ~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~-~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~-~L~~L~  362 (410)
                       .+..++. .....+++|++|+++++. ++.+ +..+..      +++|+.|+++++ .++...... +..+| +|++|+
T Consensus       186 -~l~~~~~-~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~------l~~L~~L~L~~N-~l~~~~~~~-~~~~~~~L~~L~  254 (306)
T 2z66_A          186 -QLEQLSP-TAFNSLSSLQVLNMSHNN-FFSLDTFPYKC------LNSLQVLDYSLN-HIMTSKKQE-LQHFPSSLAFLN  254 (306)
T ss_dssp             -CCCEECT-TTTTTCTTCCEEECTTSC-CSBCCSGGGTT------CTTCCEEECTTS-CCCBCSSSS-CCCCCTTCCEEE
T ss_pred             -CcCCcCH-HHhcCCCCCCEEECCCCc-cCccChhhccC------cccCCEeECCCC-CCcccCHHH-HHhhhccCCEEE
Confidence             2333321 233445555555555542 2222 122333      555666666654 233333221 12342 566666


Q ss_pred             EecC
Q 036454          363 VENC  366 (410)
Q Consensus       363 l~~c  366 (410)
                      ++++
T Consensus       255 L~~N  258 (306)
T 2z66_A          255 LTQN  258 (306)
T ss_dssp             CTTC
T ss_pred             ccCC
Confidence            6554

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=99.70  E-value=6.4e-17  Score=146.90  Aligned_cols=216  Identities=16%  Similarity=0.186  Sum_probs=153.2

Q ss_pred             ccccCccccccccccCCcEEEecCccccccccccCCccccccCcccEEEeccCcCccccCchhHHhhhhccceEeecccc
Q 036454            5 LQEVNSEETHSGAATQLRELHVFHLPKLTKLWNKDPQGKLIFRNLVVVRIFDCQSLKNIFPTSIARSLLRLETLSIKDCG   84 (410)
Q Consensus         5 ~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~   84 (410)
                      .+.....+.+.+..++|++|+++++. ++.+.   +..+..+++|++|+++++ .+..+.+..+ .++++|++|+++++.
T Consensus        18 c~~~~l~~ip~~~~~~l~~L~l~~n~-i~~~~---~~~~~~~~~L~~L~l~~n-~l~~~~~~~~-~~l~~L~~L~l~~n~   91 (285)
T 1ozn_A           18 CPQQGLQAVPVGIPAASQRIFLHGNR-ISHVP---AASFRACRNLTILWLHSN-VLARIDAAAF-TGLALLEQLDLSDNA   91 (285)
T ss_dssp             CCSSCCSSCCTTCCTTCSEEECTTSC-CCEEC---TTTTTTCTTCCEEECCSS-CCCEECTTTT-TTCTTCCEEECCSCT
T ss_pred             cCcCCcccCCcCCCCCceEEEeeCCc-CCccC---HHHcccCCCCCEEECCCC-ccceeCHhhc-CCccCCCEEeCCCCC
Confidence            33334445666677899999999984 44331   345678999999999998 5666655444 689999999999986


Q ss_pred             CcceEeccCCCCCCCcccccCCCccEEeeccCCCccccccCcccCCCCCceEEEEccCCccccccEEEeeccCccccccc
Q 036454           85 SVEEIVANDGRGNDAATKFIFPSLTFLRLRDLPDLTTFYSGMHILECPELRKLEVNHVDVFANLEELTLSKCIFTTWRQA  164 (410)
Q Consensus        85 ~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~l~~L~~L~i~~~~~~~~~~~  164 (410)
                      .+..++.        ..+..+++|+.|+++++ .+..++...+. .+              ++|++|++++|.+...++.
T Consensus        92 ~l~~~~~--------~~~~~l~~L~~L~l~~n-~l~~~~~~~~~-~l--------------~~L~~L~l~~n~l~~~~~~  147 (285)
T 1ozn_A           92 QLRSVDP--------ATFHGLGRLHTLHLDRC-GLQELGPGLFR-GL--------------AALQYLYLQDNALQALPDD  147 (285)
T ss_dssp             TCCCCCT--------TTTTTCTTCCEEECTTS-CCCCCCTTTTT-TC--------------TTCCEEECCSSCCCCCCTT
T ss_pred             CccccCH--------HHhcCCcCCCEEECCCC-cCCEECHhHhh-CC--------------cCCCEEECCCCcccccCHh
Confidence            5666643        25677899999999998 45554433322 33              4555556666655555443


Q ss_pred             c---cccccEEEEEeCCCccchhhhhhhcccCceEEEeccccccccccchhhccccccCcccEEEeCCcccccccccCCC
Q 036454          165 Q---FHKLKILHFISDGSDFFQVGLLQNIHNLEKLVLSTCEYKKIFSCEEVEEHAEGIAQIKSLKLKKLWLIEEHLWNPD  241 (410)
Q Consensus       165 ~---l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~  241 (410)
                      .   +++|+.|++....+...+...+..+++|+.|++++|.+..+.+     ..+..+++|+.|+++++     .+....
T Consensus       148 ~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~-----~~~~~l~~L~~L~l~~n-----~l~~~~  217 (285)
T 1ozn_A          148 TFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHP-----HAFRDLGRLMTLYLFAN-----NLSALP  217 (285)
T ss_dssp             TTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECT-----TTTTTCTTCCEEECCSS-----CCSCCC
T ss_pred             HhccCCCccEEECCCCcccccCHHHhcCccccCEEECCCCcccccCH-----hHccCcccccEeeCCCC-----cCCcCC
Confidence            2   7788888887667777776667888999999999988776633     24567889999999984     332223


Q ss_pred             CccccccccceEEEEeccc
Q 036454          242 SKLDSFLQNLEFLEVKKCA  260 (410)
Q Consensus       242 ~~~~~~~~~L~~L~l~~~~  260 (410)
                      ...+..+++|++|++++|+
T Consensus       218 ~~~~~~l~~L~~L~l~~N~  236 (285)
T 1ozn_A          218 TEALAPLRALQYLRLNDNP  236 (285)
T ss_dssp             HHHHTTCTTCCEEECCSSC
T ss_pred             HHHcccCcccCEEeccCCC
Confidence            3456788999999999985

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.69  E-value=2.3e-16  Score=154.01  Aligned_cols=237  Identities=15%  Similarity=0.147  Sum_probs=171.5

Q ss_pred             cccccCCcEEEecCccccccccccCCccccccCcccEEEeccCcCccccCchhHHhhhhccceEeeccccCcceEeccCC
Q 036454           15 SGAATQLRELHVFHLPKLTKLWNKDPQGKLIFRNLVVVRIFDCQSLKNIFPTSIARSLLRLETLSIKDCGSVEEIVANDG   94 (410)
Q Consensus        15 ~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~   94 (410)
                      ...+++|+.|+++++. ++.+   .|..+..+++|++|++++| .+...++.   +++++|++|+++++. +..++.   
T Consensus        30 ~~~~~~L~~L~Ls~n~-l~~~---~~~~~~~l~~L~~L~Ls~N-~l~~~~~l---~~l~~L~~L~Ls~N~-l~~l~~---   97 (487)
T 3oja_A           30 RQSAWNVKELDLSGNP-LSQI---SAADLAPFTKLELLNLSSN-VLYETLDL---ESLSTLRTLDLNNNY-VQELLV---   97 (487)
T ss_dssp             STTGGGCCEEECCSSC-CCCC---CGGGGTTCTTCCEEECTTS-CCEEEEEC---TTCTTCCEEECCSSE-EEEEEE---
T ss_pred             cccCCCccEEEeeCCc-CCCC---CHHHHhCCCCCCEEEeeCC-CCCCCccc---ccCCCCCEEEecCCc-CCCCCC---
Confidence            3446699999999984 4433   1456789999999999999 55555553   789999999999986 777664   


Q ss_pred             CCCCCcccccCCCccEEeeccCCCccccccCcccCCCCCceEEEEccCCccccccEEEeeccCcccccccc---cccccE
Q 036454           95 RGNDAATKFIFPSLTFLRLRDLPDLTTFYSGMHILECPELRKLEVNHVDVFANLEELTLSKCIFTTWRQAQ---FHKLKI  171 (410)
Q Consensus        95 ~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~l~~L~~L~i~~~~~~~~~~~~---l~~L~~  171 (410)
                                .++|+.|+++++ .+..++..    .+              ++|+.|++++|.+....+..   +++|+.
T Consensus        98 ----------~~~L~~L~L~~N-~l~~~~~~----~l--------------~~L~~L~L~~N~l~~~~~~~~~~l~~L~~  148 (487)
T 3oja_A           98 ----------GPSIETLHAANN-NISRVSCS----RG--------------QGKKNIYLANNKITMLRDLDEGCRSRVQY  148 (487)
T ss_dssp             ----------CTTCCEEECCSS-CCCCEEEC----CC--------------SSCEEEECCSSCCCSGGGBCGGGGSSEEE
T ss_pred             ----------CCCcCEEECcCC-cCCCCCcc----cc--------------CCCCEEECCCCCCCCCCchhhcCCCCCCE
Confidence                      289999999998 55544332    22              45666666666666554433   778888


Q ss_pred             EEEEeCCCccchhhhh-hhcccCceEEEeccccccccccchhhccccccCcccEEEeCCcccccccccCCCCcccccccc
Q 036454          172 LHFISDGSDFFQVGLL-QNIHNLEKLVLSTCEYKKIFSCEEVEEHAEGIAQIKSLKLKKLWLIEEHLWNPDSKLDSFLQN  250 (410)
Q Consensus       172 L~l~~~~~~~~~~~~l-~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~  250 (410)
                      |+++.+.+...+...+ ..+++|+.|++++|.+..+..       ...+++|+.|+++++.-.  .+    +..+..+++
T Consensus       149 L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~~~~~-------~~~l~~L~~L~Ls~N~l~--~~----~~~~~~l~~  215 (487)
T 3oja_A          149 LDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVKG-------QVVFAKLKTLDLSSNKLA--FM----GPEFQSAAG  215 (487)
T ss_dssp             EECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEEEC-------CCCCTTCCEEECCSSCCC--EE----CGGGGGGTT
T ss_pred             EECCCCCCCCcChHHHhhhCCcccEEecCCCccccccc-------cccCCCCCEEECCCCCCC--CC----CHhHcCCCC
Confidence            8886665555444444 478999999999999887754       446899999999984322  22    234678899


Q ss_pred             ceEEEEecccccccccccCccccCccCEEEEcccCCcccccchhhhhcCCCccEEEec
Q 036454          251 LEFLEVKKCALSLISLVPSSASFRNLTVLKVCNCWQLISLVTPQTAKTLVQLRELRVS  308 (410)
Q Consensus       251 L~~L~l~~~~~~l~~l~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~  308 (410)
                      |+.|++++|  .++.+|..+..+++|+.|++++++ +.......+...++.|+.+++.
T Consensus       216 L~~L~Ls~N--~l~~lp~~l~~l~~L~~L~l~~N~-l~c~~~~~~~~~l~~L~~l~~~  270 (487)
T 3oja_A          216 VTWISLRNN--KLVLIEKALRFSQNLEHFDLRGNG-FHCGTLRDFFSKNQRVQTVAKQ  270 (487)
T ss_dssp             CSEEECTTS--CCCEECTTCCCCTTCCEEECTTCC-BCHHHHHHHHTTCHHHHHHHHH
T ss_pred             ccEEEecCC--cCcccchhhccCCCCCEEEcCCCC-CcCcchHHHHHhCCCCcEEecc
Confidence            999999999  677888888889999999998875 3311112455667777777665

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=99.64  E-value=6e-15  Score=130.24  Aligned_cols=197  Identities=12%  Similarity=0.125  Sum_probs=134.1

Q ss_pred             cccEEEEEeCCCccchhhhhhhcccCceEEEeccc-cccccccchhhccccccCcccEEEeCCcccccccccCCCCcccc
Q 036454          168 KLKILHFISDGSDFFQVGLLQNIHNLEKLVLSTCE-YKKIFSCEEVEEHAEGIAQIKSLKLKKLWLIEEHLWNPDSKLDS  246 (410)
Q Consensus       168 ~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~-~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~  246 (410)
                      +|+.|++....+..++...+.++++|+.|+++++. +..+..     ..+.++++|++|++++|..+ ..+   ....+.
T Consensus        32 ~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~-----~~f~~l~~L~~L~l~~~n~l-~~i---~~~~f~  102 (239)
T 2xwt_C           32 STQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLES-----HSFYNLSKVTHIEIRNTRNL-TYI---DPDALK  102 (239)
T ss_dssp             TCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECT-----TTEESCTTCCEEEEEEETTC-CEE---CTTSEE
T ss_pred             cccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCH-----hHcCCCcCCcEEECCCCCCe-eEc---CHHHhC
Confidence            45555554444445555556777888888888875 666543     13566788888888876666 444   123466


Q ss_pred             ccccceEEEEecccccccccccCccccCccC---EEEEcccCCcccccchhhhhcCCCcc-EEEeccCcccchhccccCC
Q 036454          247 FLQNLEFLEVKKCALSLISLVPSSASFRNLT---VLKVCNCWQLISLVTPQTAKTLVQLR-ELRVSECNRLEEIVANDGD  322 (410)
Q Consensus       247 ~~~~L~~L~l~~~~~~l~~l~~~~~~~~~L~---~L~l~~c~~l~~~~~~~~~~~l~~L~-~L~l~~c~~l~~~~~~~~~  322 (410)
                      .+++|++|++++|  .++.++. +..+++|+   +|++++++.+..++. .....+++|+ +|+++++ .++.++.....
T Consensus       103 ~l~~L~~L~l~~n--~l~~lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~-~~~~~l~~L~~~L~l~~n-~l~~i~~~~~~  177 (239)
T 2xwt_C          103 ELPLLKFLGIFNT--GLKMFPD-LTKVYSTDIFFILEITDNPYMTSIPV-NAFQGLCNETLTLKLYNN-GFTSVQGYAFN  177 (239)
T ss_dssp             CCTTCCEEEEEEE--CCCSCCC-CTTCCBCCSEEEEEEESCTTCCEECT-TTTTTTBSSEEEEECCSC-CCCEECTTTTT
T ss_pred             CCCCCCEEeCCCC--CCccccc-cccccccccccEEECCCCcchhhcCc-ccccchhcceeEEEcCCC-CCcccCHhhcC
Confidence            7788888888888  4666655 66677777   888887756777653 3356778888 8888875 45566554444


Q ss_pred             CCccccccccceeecCcCcccceecCCCcccCC-CCccEEEEecCCCCcccCCCCCCCCCcceeEec
Q 036454          323 ADDEIVFSKLKWLFLESSESITSFCSGNYAFSF-PSLEDLIVENCPKLNTFSAGVLKTPRLQAVQNW  388 (410)
Q Consensus       323 ~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~-~~L~~L~l~~c~~l~~~~~~~~~~~~L~~l~~~  388 (410)
                            .++|+.|++++++.++.++... +..+ ++|++|+++++ .++.+|..  .+++|+.|++.
T Consensus       178 ------~~~L~~L~L~~n~~l~~i~~~~-~~~l~~~L~~L~l~~N-~l~~l~~~--~~~~L~~L~l~  234 (239)
T 2xwt_C          178 ------GTKLDAVYLNKNKYLTVIDKDA-FGGVYSGPSLLDVSQT-SVTALPSK--GLEHLKELIAR  234 (239)
T ss_dssp             ------TCEEEEEECTTCTTCCEECTTT-TTTCSBCCSEEECTTC-CCCCCCCT--TCTTCSEEECT
T ss_pred             ------CCCCCEEEcCCCCCcccCCHHH-hhccccCCcEEECCCC-ccccCChh--HhccCceeecc
Confidence                  4688888888876677776543 4457 88888888775 56677765  47788888875

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=99.64  E-value=4.2e-15  Score=131.23  Aligned_cols=67  Identities=10%  Similarity=0.243  Sum_probs=34.5

Q ss_pred             cccEEEeccCcCccccCchhHHhhhhccceEeeccccCcceEeccCCCCCCCcccccCCCccEEeeccCCCcccccc
Q 036454           48 NLVVVRIFDCQSLKNIFPTSIARSLLRLETLSIKDCGSVEEIVANDGRGNDAATKFIFPSLTFLRLRDLPDLTTFYS  124 (410)
Q Consensus        48 ~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~  124 (410)
                      +|++|+++++ .++.+++..+ .++++|++|+++++..++.++.        ..+..+++|++|+++++..++.++.
T Consensus        32 ~l~~L~l~~n-~l~~i~~~~~-~~l~~L~~L~l~~n~~l~~i~~--------~~f~~l~~L~~L~l~~~n~l~~i~~   98 (239)
T 2xwt_C           32 STQTLKLIET-HLRTIPSHAF-SNLPNISRIYVSIDVTLQQLES--------HSFYNLSKVTHIEIRNTRNLTYIDP   98 (239)
T ss_dssp             TCCEEEEESC-CCSEECTTTT-TTCTTCCEEEEECCSSCCEECT--------TTEESCTTCCEEEEEEETTCCEECT
T ss_pred             cccEEEEeCC-cceEECHHHc-cCCCCCcEEeCCCCCCcceeCH--------hHcCCCcCCcEEECCCCCCeeEcCH
Confidence            5666666655 4444444322 4566666666665543555443        1334455666666665334444443

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=99.62  E-value=1.4e-14  Score=135.41  Aligned_cols=239  Identities=19%  Similarity=0.166  Sum_probs=163.7

Q ss_pred             cEEEecCccccccccccCCccccccCcccEEEeccCcCccccCchhHHhhhhccceEeeccccCcceEeccCCCCCCCcc
Q 036454           22 RELHVFHLPKLTKLWNKDPQGKLIFRNLVVVRIFDCQSLKNIFPTSIARSLLRLETLSIKDCGSVEEIVANDGRGNDAAT  101 (410)
Q Consensus        22 ~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~  101 (410)
                      ++++.++. +++.+    |.++  .+++++|+++++ .++.+++..+ .++++|++|+++++.....++.        ..
T Consensus        12 ~~v~C~~~-~Lt~i----P~~l--~~~l~~L~Ls~N-~i~~i~~~~f-~~l~~L~~L~Ls~N~i~~~i~~--------~~   74 (350)
T 4ay9_X           12 RVFLCQES-KVTEI----PSDL--PRNAIELRFVLT-KLRVIQKGAF-SGFGDLEKIEISQNDVLEVIEA--------DV   74 (350)
T ss_dssp             TEEEEEST-TCCSC----CTTC--CTTCSEEEEESC-CCSEECTTSS-TTCTTCCEEEEECCTTCCEECT--------TS
T ss_pred             CEEEecCC-CCCcc----CcCc--CCCCCEEEccCC-cCCCcCHHHH-cCCCCCCEEECcCCCCCCccCh--------hH
Confidence            45555554 44544    5543  467888888887 6777765443 5788888888888863344543        13


Q ss_pred             cccCCCccEEeeccCCCccccccCcccCCCCCceEEEEccCCccccccEEEeeccCcccccccc---cccccEEEE-EeC
Q 036454          102 KFIFPSLTFLRLRDLPDLTTFYSGMHILECPELRKLEVNHVDVFANLEELTLSKCIFTTWRQAQ---FHKLKILHF-ISD  177 (410)
Q Consensus       102 ~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~l~~L~~L~i~~~~~~~~~~~~---l~~L~~L~l-~~~  177 (410)
                      +..+++++.+...++..+..++...+. .+              ++|+.|++++|.+...++..   ..++..|++ ...
T Consensus        75 f~~L~~l~~~l~~~~N~l~~l~~~~f~-~l--------------~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~  139 (350)
T 4ay9_X           75 FSNLPKLHEIRIEKANNLLYINPEAFQ-NL--------------PNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNI  139 (350)
T ss_dssp             BCSCTTCCEEEEEEETTCCEECTTSBC-CC--------------TTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCT
T ss_pred             hhcchhhhhhhcccCCcccccCchhhh-hc--------------cccccccccccccccCCchhhcccchhhhhhhcccc
Confidence            455677766655554466666554432 33              55666666666665555433   445667777 445


Q ss_pred             CCccchhhhhhhc-ccCceEEEeccccccccccchhhccccccCcccEEEeCCcccccccccCCCCccccccccceEEEE
Q 036454          178 GSDFFQVGLLQNI-HNLEKLVLSTCEYKKIFSCEEVEEHAEGIAQIKSLKLKKLWLIEEHLWNPDSKLDSFLQNLEFLEV  256 (410)
Q Consensus       178 ~~~~~~~~~l~~l-~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~L~~L~l  256 (410)
                      .+..++...+..+ ..++.|+++++.+..+..      ......+|+++.+.++..+ ..+.   ...+..+++|++|++
T Consensus       140 ~i~~l~~~~f~~~~~~l~~L~L~~N~i~~i~~------~~f~~~~L~~l~l~~~n~l-~~i~---~~~f~~l~~L~~LdL  209 (350)
T 4ay9_X          140 NIHTIERNSFVGLSFESVILWLNKNGIQEIHN------SAFNGTQLDELNLSDNNNL-EELP---NDVFHGASGPVILDI  209 (350)
T ss_dssp             TCCEECTTSSTTSBSSCEEEECCSSCCCEECT------TSSTTEEEEEEECTTCTTC-CCCC---TTTTTTEECCSEEEC
T ss_pred             ccccccccchhhcchhhhhhccccccccCCCh------hhccccchhHHhhccCCcc-cCCC---HHHhccCcccchhhc
Confidence            6666665555555 468899999998887755      2334578999999887777 5552   345678899999999


Q ss_pred             ecccccccccccCccccCccCEEEEcccCCcccccchhhhhcCCCccEEEecc
Q 036454          257 KKCALSLISLVPSSASFRNLTVLKVCNCWQLISLVTPQTAKTLVQLRELRVSE  309 (410)
Q Consensus       257 ~~~~~~l~~l~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~  309 (410)
                      ++|  .++.+|.  ..+.+|++|.+.++.+++.+|.   ...+++|+.+++.+
T Consensus       210 s~N--~l~~lp~--~~~~~L~~L~~l~~~~l~~lP~---l~~l~~L~~l~l~~  255 (350)
T 4ay9_X          210 SRT--RIHSLPS--YGLENLKKLRARSTYNLKKLPT---LEKLVALMEASLTY  255 (350)
T ss_dssp             TTS--CCCCCCS--SSCTTCCEEECTTCTTCCCCCC---TTTCCSCCEEECSC
T ss_pred             CCC--CcCccCh--hhhccchHhhhccCCCcCcCCC---chhCcChhhCcCCC
Confidence            999  6888876  4588899999989988888873   57889999999975

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=99.62  E-value=5.5e-15  Score=135.65  Aligned_cols=192  Identities=18%  Similarity=0.255  Sum_probs=106.1

Q ss_pred             ccccccCCcEEEecCccccccccccCCccccccCcccEEEeccCcCccccCchhHHhhhhccceEeeccccCcceEeccC
Q 036454           14 HSGAATQLRELHVFHLPKLTKLWNKDPQGKLIFRNLVVVRIFDCQSLKNIFPTSIARSLLRLETLSIKDCGSVEEIVAND   93 (410)
Q Consensus        14 ~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~   93 (410)
                      ....+++|+.|++.++ .++.+     ..+..+++|++|++++| .+..+++   +.++++|++|+++++. +..++   
T Consensus        36 ~~~~l~~L~~L~l~~~-~i~~l-----~~~~~l~~L~~L~L~~n-~i~~~~~---~~~l~~L~~L~L~~n~-l~~~~---  101 (308)
T 1h6u_A           36 TQADLDGITTLSAFGT-GVTTI-----EGVQYLNNLIGLELKDN-QITDLAP---LKNLTKITELELSGNP-LKNVS---  101 (308)
T ss_dssp             CHHHHHTCCEEECTTS-CCCCC-----TTGGGCTTCCEEECCSS-CCCCCGG---GTTCCSCCEEECCSCC-CSCCG---
T ss_pred             cHHHcCCcCEEEeeCC-CccCc-----hhhhccCCCCEEEccCC-cCCCChh---HccCCCCCEEEccCCc-CCCch---
Confidence            4555777777777776 33322     24556777777777776 4555544   2567777777777765 55442   


Q ss_pred             CCCCCCcccccCCCccEEeeccCCCccccccCcccCCCCCceEEEEccCCccccccEEEeeccCcccccccccccccEEE
Q 036454           94 GRGNDAATKFIFPSLTFLRLRDLPDLTTFYSGMHILECPELRKLEVNHVDVFANLEELTLSKCIFTTWRQAQFHKLKILH  173 (410)
Q Consensus        94 ~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~l~~L~~L~i~~~~~~~~~~~~l~~L~~L~  173 (410)
                             .+..+++|+.|+++++ .+..++.  + ..+              ++|++|++++|.+....+          
T Consensus       102 -------~~~~l~~L~~L~l~~n-~l~~~~~--l-~~l--------------~~L~~L~l~~n~l~~~~~----------  146 (308)
T 1h6u_A          102 -------AIAGLQSIKTLDLTST-QITDVTP--L-AGL--------------SNLQVLYLDLNQITNISP----------  146 (308)
T ss_dssp             -------GGTTCTTCCEEECTTS-CCCCCGG--G-TTC--------------TTCCEEECCSSCCCCCGG----------
T ss_pred             -------hhcCCCCCCEEECCCC-CCCCchh--h-cCC--------------CCCCEEECCCCccCcCcc----------
Confidence                   4455667777777766 3333321  1 122              344444444444332221          


Q ss_pred             EEeCCCccchhhhhhhcccCceEEEeccccccccccchhhccccccCcccEEEeCCcccccccccCCCCccccccccceE
Q 036454          174 FISDGSDFFQVGLLQNIHNLEKLVLSTCEYKKIFSCEEVEEHAEGIAQIKSLKLKKLWLIEEHLWNPDSKLDSFLQNLEF  253 (410)
Q Consensus       174 l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~L~~  253 (410)
                                   +..+++|+.|++++|.+..+..       +..+++|+.|+++++     .+.  ....+..+++|++
T Consensus       147 -------------l~~l~~L~~L~l~~n~l~~~~~-------l~~l~~L~~L~l~~n-----~l~--~~~~l~~l~~L~~  199 (308)
T 1h6u_A          147 -------------LAGLTNLQYLSIGNAQVSDLTP-------LANLSKLTTLKADDN-----KIS--DISPLASLPNLIE  199 (308)
T ss_dssp             -------------GGGCTTCCEEECCSSCCCCCGG-------GTTCTTCCEEECCSS-----CCC--CCGGGGGCTTCCE
T ss_pred             -------------ccCCCCccEEEccCCcCCCChh-------hcCCCCCCEEECCCC-----ccC--cChhhcCCCCCCE
Confidence                         4555666666666665554432       445566666666653     221  1112455666777


Q ss_pred             EEEecccccccccccCccccCccCEEEEccc
Q 036454          254 LEVKKCALSLISLVPSSASFRNLTVLKVCNC  284 (410)
Q Consensus       254 L~l~~~~~~l~~l~~~~~~~~~L~~L~l~~c  284 (410)
                      |++++|  .+..+++ +..+++|++|+++++
T Consensus       200 L~L~~N--~l~~~~~-l~~l~~L~~L~l~~N  227 (308)
T 1h6u_A          200 VHLKNN--QISDVSP-LANTSNLFIVTLTNQ  227 (308)
T ss_dssp             EECTTS--CCCBCGG-GTTCTTCCEEEEEEE
T ss_pred             EEccCC--ccCcccc-ccCCCCCCEEEccCC
Confidence            777666  3444443 456666777777665

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=99.62  E-value=1.1e-15  Score=140.76  Aligned_cols=250  Identities=18%  Similarity=0.065  Sum_probs=146.1

Q ss_pred             cccCcccEEEeccCcCccccCchhHHhhhhccceEeeccccCcceEeccCCCCCCCcccc-------cCCCccEEeeccC
Q 036454           44 LIFRNLVVVRIFDCQSLKNIFPTSIARSLLRLETLSIKDCGSVEEIVANDGRGNDAATKF-------IFPSLTFLRLRDL  116 (410)
Q Consensus        44 ~~l~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~-------~l~~L~~L~l~~~  116 (410)
                      +..++|++|+++++..  .+ |..+.   ..|++|+++++. +.......       ...       .+++|++|+++++
T Consensus        40 ~~~~~L~~l~l~~n~l--~~-p~~~~---~~L~~L~L~~n~-l~~~~~~~-------~~~~~~~~~~~l~~L~~L~L~~n  105 (312)
T 1wwl_A           40 GGGRSLEYLLKRVDTE--AD-LGQFT---DIIKSLSLKRLT-VRAARIPS-------RILFGALRVLGISGLQELTLENL  105 (312)
T ss_dssp             EEEEECTTHHHHCCTT--CC-CHHHH---HHHHHCCCCEEE-EEEEECBH-------HHHHHHHHHHTTSCCCEEEEEEE
T ss_pred             ccCCCceeEeeccccc--cc-HHHHH---HHHhhccccccc-ccCCCcCH-------HHHHHHHHhcCcCCccEEEccCC
Confidence            4567788888887743  34 33332   237888888765 54332110       222       5788899998887


Q ss_pred             CCcc-ccccCcccCCCCCceEEEEccCCccccccEEEeeccCcccccccc--c-----ccccEEEEEeCCCccchhhhhh
Q 036454          117 PDLT-TFYSGMHILECPELRKLEVNHVDVFANLEELTLSKCIFTTWRQAQ--F-----HKLKILHFISDGSDFFQVGLLQ  188 (410)
Q Consensus       117 ~~l~-~~~~~~~~~~~~~L~~L~l~~~~~l~~L~~L~i~~~~~~~~~~~~--l-----~~L~~L~l~~~~~~~~~~~~l~  188 (410)
                       .+. ..+...+...+              ++|++|++++|.+...+...  +     ++|++|+++...+...+...++
T Consensus       106 -~l~~~~~~~~~~~~l--------------~~L~~L~Ls~N~l~~~~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~  170 (312)
T 1wwl_A          106 -EVTGTAPPPLLEATG--------------PDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVR  170 (312)
T ss_dssp             -BCBSCCCCCSSSCCS--------------CCCSEEEEESCBCSSSSSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCC
T ss_pred             -cccchhHHHHHHhcC--------------CCccEEEccCCCCcchhHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhc
Confidence             343 33333211233              44555555555554442111  2     6777777766666666656677


Q ss_pred             hcccCceEEEeccccccccccchhhccccccCcccEEEeCCcccccccccCCCCccccccccceEEEEecccccccccc-
Q 036454          189 NIHNLEKLVLSTCEYKKIFSCEEVEEHAEGIAQIKSLKLKKLWLIEEHLWNPDSKLDSFLQNLEFLEVKKCALSLISLV-  267 (410)
Q Consensus       189 ~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~l~~l~-  267 (410)
                      ++++|+.|++++|.+...... .....+..+++|++|+++++.-.  .+.......+..+++|++|++++|  .++..+ 
T Consensus       171 ~l~~L~~L~Ls~N~l~~~~~~-~~~~~~~~l~~L~~L~L~~N~l~--~~~~~~~~~~~~l~~L~~L~Ls~N--~l~~~~~  245 (312)
T 1wwl_A          171 VFPALSTLDLSDNPELGERGL-ISALCPLKFPTLQVLALRNAGME--TPSGVCSALAAARVQLQGLDLSHN--SLRDAAG  245 (312)
T ss_dssp             CCSSCCEEECCSCTTCHHHHH-HHHSCTTSCTTCCEEECTTSCCC--CHHHHHHHHHHTTCCCSEEECTTS--CCCSSCC
T ss_pred             cCCCCCEEECCCCCcCcchHH-HHHHHhccCCCCCEEECCCCcCc--chHHHHHHHHhcCCCCCEEECCCC--cCCcccc
Confidence            788888888888774332110 00111256788888888874211  100000112345678888888888  454433 


Q ss_pred             -cCccccCccCEEEEcccCCcccccchhhhhcCCCccEEEeccCcccchhccccCCCCccccccccceeecCcC
Q 036454          268 -PSSASFRNLTVLKVCNCWQLISLVTPQTAKTLVQLRELRVSECNRLEEIVANDGDADDEIVFSKLKWLFLESS  340 (410)
Q Consensus       268 -~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~L~~L~l~~c  340 (410)
                       .....+++|++|+++++ .++.++.  ..  .++|++|+++++ .++.++. +..      +++|+.|++++.
T Consensus       246 ~~~~~~l~~L~~L~Ls~N-~l~~ip~--~~--~~~L~~L~Ls~N-~l~~~p~-~~~------l~~L~~L~L~~N  306 (312)
T 1wwl_A          246 APSCDWPSQLNSLNLSFT-GLKQVPK--GL--PAKLSVLDLSYN-RLDRNPS-PDE------LPQVGNLSLKGN  306 (312)
T ss_dssp             CSCCCCCTTCCEEECTTS-CCSSCCS--SC--CSEEEEEECCSS-CCCSCCC-TTT------SCEEEEEECTTC
T ss_pred             hhhhhhcCCCCEEECCCC-ccChhhh--hc--cCCceEEECCCC-CCCCChh-Hhh------CCCCCEEeccCC
Confidence             33455688888888776 4666653  11  178888888875 5555554 556      888888888874

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=99.60  E-value=9.2e-16  Score=141.16  Aligned_cols=251  Identities=16%  Similarity=0.110  Sum_probs=158.7

Q ss_pred             ccccccCCcEEEecCccccccccccCCccccccCcccEEEeccCcCcccc-CchhHH------hhhhccceEeeccccCc
Q 036454           14 HSGAATQLRELHVFHLPKLTKLWNKDPQGKLIFRNLVVVRIFDCQSLKNI-FPTSIA------RSLLRLETLSIKDCGSV   86 (410)
Q Consensus        14 ~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~-~~~~~~------~~l~~L~~L~l~~~~~l   86 (410)
                      ..+..++|+.|++.++..  .+    |..+...  |++|+++++. +... .+..+.      .++++|++|+++++. +
T Consensus        38 ~~~~~~~L~~l~l~~n~l--~~----p~~~~~~--L~~L~L~~n~-l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~-l  107 (312)
T 1wwl_A           38 LYGGGRSLEYLLKRVDTE--AD----LGQFTDI--IKSLSLKRLT-VRAARIPSRILFGALRVLGISGLQELTLENLE-V  107 (312)
T ss_dssp             EEEEEEECTTHHHHCCTT--CC----CHHHHHH--HHHCCCCEEE-EEEEECBHHHHHHHHHHHTTSCCCEEEEEEEB-C
T ss_pred             EEccCCCceeEeeccccc--cc----HHHHHHH--Hhhccccccc-ccCCCcCHHHHHHHHHhcCcCCccEEEccCCc-c
Confidence            456678888888888752  22    5543333  8888888773 3221 122110      158899999999987 5


Q ss_pred             c-eEeccCCCCCCCccc--ccCCCccEEeeccCCCccccccCcccCCCCCceEEEEccCCccccccEEEeeccCcccccc
Q 036454           87 E-EIVANDGRGNDAATK--FIFPSLTFLRLRDLPDLTTFYSGMHILECPELRKLEVNHVDVFANLEELTLSKCIFTTWRQ  163 (410)
Q Consensus        87 ~-~~~~~~~~~~~~~~~--~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~l~~L~~L~i~~~~~~~~~~  163 (410)
                      . .+|.         .+  ..+++|++|+++++ .+...+... . .++.         ...++|++|++++|.+....+
T Consensus       108 ~~~~~~---------~~~~~~l~~L~~L~Ls~N-~l~~~~~~~-~-~l~~---------~~~~~L~~L~L~~N~l~~~~~  166 (312)
T 1wwl_A          108 TGTAPP---------PLLEATGPDLNILNLRNV-SWATRDAWL-A-ELQQ---------WLKPGLKVLSIAQAHSLNFSC  166 (312)
T ss_dssp             BSCCCC---------CSSSCCSCCCSEEEEESC-BCSSSSSHH-H-HHHT---------TCCTTCCEEEEESCSCCCCCT
T ss_pred             cchhHH---------HHHHhcCCCccEEEccCC-CCcchhHHH-H-HHHH---------hhcCCCcEEEeeCCCCccchH
Confidence            5 4444         33  67899999999998 555543211 1 1100         001556666666666655554


Q ss_pred             cc---cccccEEEEEeCCCcc-c--hhh-hhhhcccCceEEEeccccccccccchhhccccccCcccEEEeCCccccccc
Q 036454          164 AQ---FHKLKILHFISDGSDF-F--QVG-LLQNIHNLEKLVLSTCEYKKIFSCEEVEEHAEGIAQIKSLKLKKLWLIEEH  236 (410)
Q Consensus       164 ~~---l~~L~~L~l~~~~~~~-~--~~~-~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~  236 (410)
                      ..   +++|+.|+++.+.... .  +.. .+..+++|+.|++++|.+..+..  .....+..+++|++|+++++     .
T Consensus       167 ~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~--~~~~~~~~l~~L~~L~Ls~N-----~  239 (312)
T 1wwl_A          167 EQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSG--VCSALAAARVQLQGLDLSHN-----S  239 (312)
T ss_dssp             TTCCCCSSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHHH--HHHHHHHTTCCCSEEECTTS-----C
T ss_pred             HHhccCCCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcchHH--HHHHHHhcCCCCCEEECCCC-----c
Confidence            33   7778888885444322 1  111 12678899999999988764422  11223346789999999884     3


Q ss_pred             ccCCC-CccccccccceEEEEecccccccccccCccccCccCEEEEcccCCcccccchhhhhcCCCccEEEeccC
Q 036454          237 LWNPD-SKLDSFLQNLEFLEVKKCALSLISLVPSSASFRNLTVLKVCNCWQLISLVTPQTAKTLVQLRELRVSEC  310 (410)
Q Consensus       237 ~~~~~-~~~~~~~~~L~~L~l~~~~~~l~~l~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c  310 (410)
                      +.... ......+++|++|++++|  .++.+|..+.  ++|++|+++++ +++.++.   ...+++|++|+++++
T Consensus       240 l~~~~~~~~~~~l~~L~~L~Ls~N--~l~~ip~~~~--~~L~~L~Ls~N-~l~~~p~---~~~l~~L~~L~L~~N  306 (312)
T 1wwl_A          240 LRDAAGAPSCDWPSQLNSLNLSFT--GLKQVPKGLP--AKLSVLDLSYN-RLDRNPS---PDELPQVGNLSLKGN  306 (312)
T ss_dssp             CCSSCCCSCCCCCTTCCEEECTTS--CCSSCCSSCC--SEEEEEECCSS-CCCSCCC---TTTSCEEEEEECTTC
T ss_pred             CCcccchhhhhhcCCCCEEECCCC--ccChhhhhcc--CCceEEECCCC-CCCCChh---HhhCCCCCEEeccCC
Confidence            32211 233455789999999999  5667776554  88999999876 5776642   578899999999875

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=99.60  E-value=8.5e-16  Score=138.50  Aligned_cols=180  Identities=17%  Similarity=0.193  Sum_probs=86.2

Q ss_pred             cccccCCcEEEecCccccccccccCCccccccCcccEEEeccCcCccccCchhHHhhhhccceEeeccccCcceEeccCC
Q 036454           15 SGAATQLRELHVFHLPKLTKLWNKDPQGKLIFRNLVVVRIFDCQSLKNIFPTSIARSLLRLETLSIKDCGSVEEIVANDG   94 (410)
Q Consensus        15 ~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~   94 (410)
                      ...+++|+.|++.++. ++.     ..++..+++|++|++++| .+..++.   ..++++|++|+++++. +..++.   
T Consensus        37 ~~~l~~L~~L~l~~~~-i~~-----~~~l~~l~~L~~L~l~~n-~l~~~~~---l~~l~~L~~L~L~~n~-l~~~~~---  102 (272)
T 3rfs_A           37 QNELNSIDQIIANNSD-IKS-----VQGIQYLPNVRYLALGGN-KLHDISA---LKELTNLTYLILTGNQ-LQSLPN---  102 (272)
T ss_dssp             HHHHTTCCEEECTTSC-CCC-----CTTGGGCTTCCEEECTTS-CCCCCGG---GTTCTTCCEEECTTSC-CCCCCT---
T ss_pred             cccccceeeeeeCCCC-ccc-----ccccccCCCCcEEECCCC-CCCCchh---hcCCCCCCEEECCCCc-cCccCh---
Confidence            4455566666665552 221     223445566666666555 2333321   1455566666665554 444332   


Q ss_pred             CCCCCcccccCCCccEEeeccCCCccccccCcccCCCCCceEEEEccCCccccccEEEeeccCcccccccccccccEEEE
Q 036454           95 RGNDAATKFIFPSLTFLRLRDLPDLTTFYSGMHILECPELRKLEVNHVDVFANLEELTLSKCIFTTWRQAQFHKLKILHF  174 (410)
Q Consensus        95 ~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~l~~L~~L~i~~~~~~~~~~~~l~~L~~L~l  174 (410)
                           ..+..+++|+.|+++++ .+..++...+. .+              ++|+.|++++|.+.               
T Consensus       103 -----~~~~~l~~L~~L~L~~n-~l~~~~~~~~~-~l--------------~~L~~L~L~~n~l~---------------  146 (272)
T 3rfs_A          103 -----GVFDKLTNLKELVLVEN-QLQSLPDGVFD-KL--------------TNLTYLNLAHNQLQ---------------  146 (272)
T ss_dssp             -----TTTTTCTTCCEEECTTS-CCCCCCTTTTT-TC--------------TTCCEEECCSSCCC---------------
T ss_pred             -----hHhcCCcCCCEEECCCC-cCCccCHHHhc-cC--------------CCCCEEECCCCccC---------------
Confidence                 12344555666665555 33333322111 12              33444444444333               


Q ss_pred             EeCCCccchhhhhhhcccCceEEEeccccccccccchhhccccccCcccEEEeCCcccccccccCCCCccccccccceEE
Q 036454          175 ISDGSDFFQVGLLQNIHNLEKLVLSTCEYKKIFSCEEVEEHAEGIAQIKSLKLKKLWLIEEHLWNPDSKLDSFLQNLEFL  254 (410)
Q Consensus       175 ~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~L~~L  254 (410)
                            ..+...+.++++|+.|++++|.+..+..     ..+..+++|++|+++++     .+.......+..+++|+.|
T Consensus       147 ------~~~~~~~~~l~~L~~L~l~~n~l~~~~~-----~~~~~l~~L~~L~L~~N-----~l~~~~~~~~~~l~~L~~L  210 (272)
T 3rfs_A          147 ------SLPKGVFDKLTNLTELDLSYNQLQSLPE-----GVFDKLTQLKDLRLYQN-----QLKSVPDGVFDRLTSLQYI  210 (272)
T ss_dssp             ------CCCTTTTTTCTTCCEEECCSSCCCCCCT-----TTTTTCTTCCEEECCSS-----CCSCCCTTTTTTCTTCCEE
T ss_pred             ------ccCHHHhccCccCCEEECCCCCcCccCH-----HHhcCCccCCEEECCCC-----cCCccCHHHHhCCcCCCEE
Confidence                  3333344556666666666665554433     12344566666666663     2221122334556666677


Q ss_pred             EEeccc
Q 036454          255 EVKKCA  260 (410)
Q Consensus       255 ~l~~~~  260 (410)
                      ++++|+
T Consensus       211 ~l~~N~  216 (272)
T 3rfs_A          211 WLHDNP  216 (272)
T ss_dssp             ECCSSC
T ss_pred             EccCCC
Confidence            766664

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=99.60  E-value=1.7e-14  Score=131.04  Aligned_cols=201  Identities=18%  Similarity=0.160  Sum_probs=118.4

Q ss_pred             cccccCCcEEEecCccccccccccCCccccccCcccEEEeccCcCccccCchhHHhhhhccceEeeccccCcceEeccCC
Q 036454           15 SGAATQLRELHVFHLPKLTKLWNKDPQGKLIFRNLVVVRIFDCQSLKNIFPTSIARSLLRLETLSIKDCGSVEEIVANDG   94 (410)
Q Consensus        15 ~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~   94 (410)
                      ++.+++++.+++.+. +++.+    |.++  .+++++|+++++ .+..+++..+ .++++|++|+++++. +..++.   
T Consensus         6 ~~~l~~l~~l~~~~~-~l~~i----p~~~--~~~l~~L~L~~N-~l~~~~~~~~-~~l~~L~~L~L~~n~-l~~~~~---   72 (290)
T 1p9a_G            6 VSKVASHLEVNCDKR-NLTAL----PPDL--PKDTTILHLSEN-LLYTFSLATL-MPYTRLTQLNLDRAE-LTKLQV---   72 (290)
T ss_dssp             EECSTTCCEEECTTS-CCSSC----CSCC--CTTCCEEECTTS-CCSEEEGGGG-TTCTTCCEEECTTSC-CCEEEC---
T ss_pred             ccccCCccEEECCCC-CCCcC----CCCC--CCCCCEEEcCCC-cCCccCHHHh-hcCCCCCEEECCCCc-cCcccC---
Confidence            556677777777765 44443    4443  367777777777 4444444333 567777777777765 666653   


Q ss_pred             CCCCCcccccCCCccEEeeccCCCccccccCcccCCCCCceEEEEccCCccccccEEEeeccCcccccccccccccEEEE
Q 036454           95 RGNDAATKFIFPSLTFLRLRDLPDLTTFYSGMHILECPELRKLEVNHVDVFANLEELTLSKCIFTTWRQAQFHKLKILHF  174 (410)
Q Consensus        95 ~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~l~~L~~L~i~~~~~~~~~~~~l~~L~~L~l  174 (410)
                            . ..+++|+.|+++++ .+..++...  ..+              ++|+.|++++|.+..              
T Consensus        73 ------~-~~l~~L~~L~Ls~N-~l~~l~~~~--~~l--------------~~L~~L~l~~N~l~~--------------  114 (290)
T 1p9a_G           73 ------D-GTLPVLGTLDLSHN-QLQSLPLLG--QTL--------------PALTVLDVSFNRLTS--------------  114 (290)
T ss_dssp             ------C-SCCTTCCEEECCSS-CCSSCCCCT--TTC--------------TTCCEEECCSSCCCC--------------
T ss_pred             ------C-CCCCcCCEEECCCC-cCCcCchhh--ccC--------------CCCCEEECCCCcCcc--------------
Confidence                  2 45667777777766 444333211  112              444444444444433              


Q ss_pred             EeCCCccchhhhhhhcccCceEEEeccccccccccchhhccccccCcccEEEeCCcccccccccCCCCccccccccceEE
Q 036454          175 ISDGSDFFQVGLLQNIHNLEKLVLSTCEYKKIFSCEEVEEHAEGIAQIKSLKLKKLWLIEEHLWNPDSKLDSFLQNLEFL  254 (410)
Q Consensus       175 ~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~L~~L  254 (410)
                             .+...+.++++|+.|++++|.+..+..     ..+..+++|+.|++++     +.+.......+..+++|+.|
T Consensus       115 -------l~~~~~~~l~~L~~L~L~~N~l~~~~~-----~~~~~l~~L~~L~L~~-----N~l~~l~~~~~~~l~~L~~L  177 (290)
T 1p9a_G          115 -------LPLGALRGLGELQELYLKGNELKTLPP-----GLLTPTPKLEKLSLAN-----NNLTELPAGLLNGLENLDTL  177 (290)
T ss_dssp             -------CCSSTTTTCTTCCEEECTTSCCCCCCT-----TTTTTCTTCCEEECTT-----SCCSCCCTTTTTTCTTCCEE
T ss_pred             -------cCHHHHcCCCCCCEEECCCCCCCccCh-----hhcccccCCCEEECCC-----CcCCccCHHHhcCcCCCCEE
Confidence                   333345667777777777777665533     1244567777777776     33322223345667778888


Q ss_pred             EEecccccccccccCccccCccCEEEEcccC
Q 036454          255 EVKKCALSLISLVPSSASFRNLTVLKVCNCW  285 (410)
Q Consensus       255 ~l~~~~~~l~~l~~~~~~~~~L~~L~l~~c~  285 (410)
                      ++++|  .++.++..+...++|+.+.+++++
T Consensus       178 ~L~~N--~l~~ip~~~~~~~~L~~l~L~~Np  206 (290)
T 1p9a_G          178 LLQEN--SLYTIPKGFFGSHLLPFAFLHGNP  206 (290)
T ss_dssp             ECCSS--CCCCCCTTTTTTCCCSEEECCSCC
T ss_pred             ECCCC--cCCccChhhcccccCCeEEeCCCC
Confidence            88777  566677666667777777777653

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=99.60  E-value=2.6e-14  Score=129.02  Aligned_cols=86  Identities=20%  Similarity=0.174  Sum_probs=48.8

Q ss_pred             hhhhcccCceEEEeccccccccccchhhccccccCccc----EEEeCCcccccccccCCCCccccccccceEEEEecccc
Q 036454          186 LLQNIHNLEKLVLSTCEYKKIFSCEEVEEHAEGIAQIK----SLKLKKLWLIEEHLWNPDSKLDSFLQNLEFLEVKKCAL  261 (410)
Q Consensus       186 ~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~L~----~L~l~~c~~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~  261 (410)
                      .+.++++|+.|++++|.+..+..     ..+..+++|+    +|++++....  .+   ... .....+|++|++++|  
T Consensus       144 ~~~~l~~L~~L~Ls~N~l~~~~~-----~~~~~l~~L~~l~l~L~ls~n~l~--~~---~~~-~~~~~~L~~L~L~~n--  210 (276)
T 2z62_A          144 YFSNLTNLEHLDLSSNKIQSIYC-----TDLRVLHQMPLLNLSLDLSLNPMN--FI---QPG-AFKEIRLKELALDTN--  210 (276)
T ss_dssp             GGGGCTTCCEEECCSSCCCEECG-----GGGHHHHTCTTCCEEEECCSSCCC--EE---CTT-SSCSCCEEEEECCSS--
T ss_pred             hhccCCCCCEEECCCCCCCcCCH-----HHhhhhhhccccceeeecCCCccc--cc---Ccc-ccCCCcccEEECCCC--
Confidence            45667777777777776655532     1233334444    6666663211  11   111 122337888888887  


Q ss_pred             cccccccC-ccccCccCEEEEccc
Q 036454          262 SLISLVPS-SASFRNLTVLKVCNC  284 (410)
Q Consensus       262 ~l~~l~~~-~~~~~~L~~L~l~~c  284 (410)
                      .++.++.. +..+++|++|+++++
T Consensus       211 ~l~~~~~~~~~~l~~L~~L~l~~N  234 (276)
T 2z62_A          211 QLKSVPDGIFDRLTSLQKIWLHTN  234 (276)
T ss_dssp             CCSCCCTTTTTTCCSCCEEECCSS
T ss_pred             ceeecCHhHhcccccccEEEccCC
Confidence            46566544 356788888888765

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=99.59  E-value=1.6e-14  Score=132.56  Aligned_cols=196  Identities=17%  Similarity=0.186  Sum_probs=126.9

Q ss_pred             ccCcccEEEeccCcCccccCchhHHhhhhccceEeeccccCcceEeccCCCCCCCcccccCCCccEEeeccCCCcccccc
Q 036454           45 IFRNLVVVRIFDCQSLKNIFPTSIARSLLRLETLSIKDCGSVEEIVANDGRGNDAATKFIFPSLTFLRLRDLPDLTTFYS  124 (410)
Q Consensus        45 ~l~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~  124 (410)
                      .+++|++|++.+| .+..++..   ..+++|++|+++++. +..++          .+..+++|+.|+++++ .+..++.
T Consensus        39 ~l~~L~~L~l~~~-~i~~l~~~---~~l~~L~~L~L~~n~-i~~~~----------~~~~l~~L~~L~L~~n-~l~~~~~  102 (308)
T 1h6u_A           39 DLDGITTLSAFGT-GVTTIEGV---QYLNNLIGLELKDNQ-ITDLA----------PLKNLTKITELELSGN-PLKNVSA  102 (308)
T ss_dssp             HHHTCCEEECTTS-CCCCCTTG---GGCTTCCEEECCSSC-CCCCG----------GGTTCCSCCEEECCSC-CCSCCGG
T ss_pred             HcCCcCEEEeeCC-CccCchhh---hccCCCCEEEccCCc-CCCCh----------hHccCCCCCEEEccCC-cCCCchh
Confidence            4666666666666 44444322   456666666666654 44433          2445566666666665 2333221


Q ss_pred             CcccCCCCCceEEEEccCCccccccEEEeeccCcccccccccccccEEEEEeCCCccchhhhhhhcccCceEEEeccccc
Q 036454          125 GMHILECPELRKLEVNHVDVFANLEELTLSKCIFTTWRQAQFHKLKILHFISDGSDFFQVGLLQNIHNLEKLVLSTCEYK  204 (410)
Q Consensus       125 ~~~~~~~~~L~~L~l~~~~~l~~L~~L~i~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~  204 (410)
                        + ..+              ++|+.|++++|.+                     ...+  .+..+++|+.|++++|.+.
T Consensus       103 --~-~~l--------------~~L~~L~l~~n~l---------------------~~~~--~l~~l~~L~~L~l~~n~l~  142 (308)
T 1h6u_A          103 --I-AGL--------------QSIKTLDLTSTQI---------------------TDVT--PLAGLSNLQVLYLDLNQIT  142 (308)
T ss_dssp             --G-TTC--------------TTCCEEECTTSCC---------------------CCCG--GGTTCTTCCEEECCSSCCC
T ss_pred             --h-cCC--------------CCCCEEECCCCCC---------------------CCch--hhcCCCCCCEEECCCCccC
Confidence              0 112              3334444443333                     2333  2678899999999999887


Q ss_pred             cccccchhhccccccCcccEEEeCCcccccccccCCCCccccccccceEEEEecccccccccccCccccCccCEEEEccc
Q 036454          205 KIFSCEEVEEHAEGIAQIKSLKLKKLWLIEEHLWNPDSKLDSFLQNLEFLEVKKCALSLISLVPSSASFRNLTVLKVCNC  284 (410)
Q Consensus       205 ~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~l~~l~~~~~~~~~L~~L~l~~c  284 (410)
                      .+..       +..+++|+.|+++++.-.  .+     ..+..+++|++|++++|  .++.+++ +..+++|++|+++++
T Consensus       143 ~~~~-------l~~l~~L~~L~l~~n~l~--~~-----~~l~~l~~L~~L~l~~n--~l~~~~~-l~~l~~L~~L~L~~N  205 (308)
T 1h6u_A          143 NISP-------LAGLTNLQYLSIGNAQVS--DL-----TPLANLSKLTTLKADDN--KISDISP-LASLPNLIEVHLKNN  205 (308)
T ss_dssp             CCGG-------GGGCTTCCEEECCSSCCC--CC-----GGGTTCTTCCEEECCSS--CCCCCGG-GGGCTTCCEEECTTS
T ss_pred             cCcc-------ccCCCCccEEEccCCcCC--CC-----hhhcCCCCCCEEECCCC--ccCcChh-hcCCCCCCEEEccCC
Confidence            7654       667899999999985322  22     23778999999999999  5666655 678999999999887


Q ss_pred             CCcccccchhhhhcCCCccEEEeccCcccchhcc
Q 036454          285 WQLISLVTPQTAKTLVQLRELRVSECNRLEEIVA  318 (410)
Q Consensus       285 ~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~  318 (410)
                       .+..++   ....+++|++|++++++ ++..+.
T Consensus       206 -~l~~~~---~l~~l~~L~~L~l~~N~-i~~~~~  234 (308)
T 1h6u_A          206 -QISDVS---PLANTSNLFIVTLTNQT-ITNQPV  234 (308)
T ss_dssp             -CCCBCG---GGTTCTTCCEEEEEEEE-EECCCE
T ss_pred             -ccCccc---cccCCCCCCEEEccCCe-eecCCe
Confidence             466665   25889999999999863 444433

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=99.59  E-value=2.3e-14  Score=128.97  Aligned_cols=159  Identities=22%  Similarity=0.236  Sum_probs=72.4

Q ss_pred             hhhhcccCceEEEeccccccccccchhhccccccCcccEEEeCCcccccccccCCCCccccccccceEEEEecccccccc
Q 036454          186 LLQNIHNLEKLVLSTCEYKKIFSCEEVEEHAEGIAQIKSLKLKKLWLIEEHLWNPDSKLDSFLQNLEFLEVKKCALSLIS  265 (410)
Q Consensus       186 ~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~l~~  265 (410)
                      .+.++++|+.|+++++.+..+..     ..+..+++|++|+++++     .+.......+..+++|++|++++|  .++.
T Consensus        56 ~~~~l~~L~~L~l~~n~l~~i~~-----~~~~~l~~L~~L~l~~n-----~l~~~~~~~~~~l~~L~~L~l~~n--~l~~  123 (270)
T 2o6q_A           56 AFHRLTKLRLLYLNDNKLQTLPA-----GIFKELKNLETLWVTDN-----KLQALPIGVFDQLVNLAELRLDRN--QLKS  123 (270)
T ss_dssp             SSSSCTTCCEEECCSSCCSCCCT-----TTTSSCTTCCEEECCSS-----CCCCCCTTTTTTCSSCCEEECCSS--CCCC
T ss_pred             HhcCCCCCCEEECCCCccCeeCh-----hhhcCCCCCCEEECCCC-----cCCcCCHhHcccccCCCEEECCCC--ccCe
Confidence            34455555555555555444322     12234455555555552     221111223344555555555555  3333


Q ss_pred             ccc-CccccCccCEEEEcccCCcccccchhhhhcCCCccEEEeccCcccchhcc-ccCCCCccccccccceeecCcCccc
Q 036454          266 LVP-SSASFRNLTVLKVCNCWQLISLVTPQTAKTLVQLRELRVSECNRLEEIVA-NDGDADDEIVFSKLKWLFLESSESI  343 (410)
Q Consensus       266 l~~-~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~-~~~~~~~~~~~~~L~~L~l~~c~~l  343 (410)
                      +++ .+..+++|++|+++++ .+..++. .....+++|++|+++++ .++.++. .+..      +++|+.|+++++ .+
T Consensus       124 ~~~~~~~~l~~L~~L~Ls~n-~l~~~~~-~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~------l~~L~~L~L~~N-~l  193 (270)
T 2o6q_A          124 LPPRVFDSLTKLTYLSLGYN-ELQSLPK-GVFDKLTSLKELRLYNN-QLKRVPEGAFDK------LTELKTLKLDNN-QL  193 (270)
T ss_dssp             CCTTTTTTCTTCCEEECCSS-CCCCCCT-TTTTTCTTCCEEECCSS-CCSCCCTTTTTT------CTTCCEEECCSS-CC
T ss_pred             eCHHHhCcCcCCCEEECCCC-cCCccCH-hHccCCcccceeEecCC-cCcEeChhHhcc------CCCcCEEECCCC-cC
Confidence            332 2344555555555544 2444332 12344555555555553 2333322 1233      555555555553 34


Q ss_pred             ceecCCCcccCCCCccEEEEecCC
Q 036454          344 TSFCSGNYAFSFPSLEDLIVENCP  367 (410)
Q Consensus       344 ~~~~~~~~~~~~~~L~~L~l~~c~  367 (410)
                      +.++.. .+..+++|+.|++.+++
T Consensus       194 ~~~~~~-~~~~l~~L~~L~l~~N~  216 (270)
T 2o6q_A          194 KRVPEG-AFDSLEKLKMLQLQENP  216 (270)
T ss_dssp             SCCCTT-TTTTCTTCCEEECCSSC
T ss_pred             CcCCHH-HhccccCCCEEEecCCC
Confidence            444332 12345555555555543

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=99.59  E-value=1.7e-15  Score=140.80  Aligned_cols=227  Identities=17%  Similarity=0.202  Sum_probs=114.3

Q ss_pred             CCcEEEecCccccccccccCCcccccc--CcccEEEeccCcCccccCchhHHhhhhccceEeeccccCcce--EeccCCC
Q 036454           20 QLRELHVFHLPKLTKLWNKDPQGKLIF--RNLVVVRIFDCQSLKNIFPTSIARSLLRLETLSIKDCGSVEE--IVANDGR   95 (410)
Q Consensus        20 ~L~~L~l~~~~~l~~~~~~~~~~~~~l--~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~--~~~~~~~   95 (410)
                      .++.++++++. +.      +..+..+  ++++.|++.++. +....+. + .++++|++|++++|. +..  ++.    
T Consensus        48 ~~~~l~l~~~~-~~------~~~~~~~~~~~l~~L~l~~n~-l~~~~~~-~-~~~~~L~~L~L~~~~-l~~~~~~~----  112 (336)
T 2ast_B           48 LWQTLDLTGKN-LH------PDVTGRLLSQGVIAFRCPRSF-MDQPLAE-H-FSPFRVQHMDLSNSV-IEVSTLHG----  112 (336)
T ss_dssp             TSSEEECTTCB-CC------HHHHHHHHHTTCSEEECTTCE-ECSCCCS-C-CCCBCCCEEECTTCE-ECHHHHHH----
T ss_pred             hheeecccccc-CC------HHHHHhhhhccceEEEcCCcc-ccccchh-h-ccCCCCCEEEccCCC-cCHHHHHH----
Confidence            36777777653 11      2233345  788888888773 3333232 2 467888888888875 432  333    


Q ss_pred             CCCCcccccCCCccEEeeccCCCccccccCcccCCCCCceEEEEccCCccccccEEEeeccCcccccccccccccEEEEE
Q 036454           96 GNDAATKFIFPSLTFLRLRDLPDLTTFYSGMHILECPELRKLEVNHVDVFANLEELTLSKCIFTTWRQAQFHKLKILHFI  175 (410)
Q Consensus        96 ~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~l~~L~~L~i~~~~~~~~~~~~l~~L~~L~l~  175 (410)
                           .+..+++|++|+++++. +.......+. .+++|++|++++|   .          .+...              
T Consensus       113 -----~~~~~~~L~~L~L~~~~-l~~~~~~~l~-~~~~L~~L~L~~~---~----------~l~~~--------------  158 (336)
T 2ast_B          113 -----ILSQCSKLQNLSLEGLR-LSDPIVNTLA-KNSNLVRLNLSGC---S----------GFSEF--------------  158 (336)
T ss_dssp             -----HHTTBCCCSEEECTTCB-CCHHHHHHHT-TCTTCSEEECTTC---B----------SCCHH--------------
T ss_pred             -----HHhhCCCCCEEeCcCcc-cCHHHHHHHh-cCCCCCEEECCCC---C----------CCCHH--------------
Confidence                 45667888888888873 4322222221 3455555544444   1          11100              


Q ss_pred             eCCCccchhhhhhhcccCceEEEecc-ccccccccchhhccccccC-cccEEEeCCcc-cccccccCCCCccccccccce
Q 036454          176 SDGSDFFQVGLLQNIHNLEKLVLSTC-EYKKIFSCEEVEEHAEGIA-QIKSLKLKKLW-LIEEHLWNPDSKLDSFLQNLE  252 (410)
Q Consensus       176 ~~~~~~~~~~~l~~l~~L~~L~l~~~-~~~~~~~~~~~~~~~~~l~-~L~~L~l~~c~-~l~~~~~~~~~~~~~~~~~L~  252 (410)
                            .....+.++++|+.|++++| .+....    .......++ +|++|++++|. .+ ..-  .-...+..+++|+
T Consensus       159 ------~l~~~~~~~~~L~~L~l~~~~~l~~~~----~~~~~~~l~~~L~~L~l~~~~~~~-~~~--~l~~~~~~~~~L~  225 (336)
T 2ast_B          159 ------ALQTLLSSCSRLDELNLSWCFDFTEKH----VQVAVAHVSETITQLNLSGYRKNL-QKS--DLSTLVRRCPNLV  225 (336)
T ss_dssp             ------HHHHHHHHCTTCCEEECCCCTTCCHHH----HHHHHHHSCTTCCEEECCSCGGGS-CHH--HHHHHHHHCTTCS
T ss_pred             ------HHHHHHhcCCCCCEEcCCCCCCcChHH----HHHHHHhcccCCCEEEeCCCcccC-CHH--HHHHHHhhCCCCC
Confidence                  00122345555666666555 443210    001233445 66666666543 12 100  0012234566666


Q ss_pred             EEEEeccccccc-ccccCccccCccCEEEEcccCCcccccchhhhhcCCCccEEEeccC
Q 036454          253 FLEVKKCALSLI-SLVPSSASFRNLTVLKVCNCWQLISLVTPQTAKTLVQLRELRVSEC  310 (410)
Q Consensus       253 ~L~l~~~~~~l~-~l~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c  310 (410)
                      +|++++|. .++ ..+..+..+++|++|++++|..+..... .....+++|++|++++|
T Consensus       226 ~L~l~~~~-~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~-~~l~~~~~L~~L~l~~~  282 (336)
T 2ast_B          226 HLDLSDSV-MLKNDCFQEFFQLNYLQHLSLSRCYDIIPETL-LELGEIPTLKTLQVFGI  282 (336)
T ss_dssp             EEECTTCT-TCCGGGGGGGGGCTTCCEEECTTCTTCCGGGG-GGGGGCTTCCEEECTTS
T ss_pred             EEeCCCCC-cCCHHHHHHHhCCCCCCEeeCCCCCCCCHHHH-HHHhcCCCCCEEeccCc
Confidence            66666664 333 2333445566677777766653332211 12355667777777666

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=99.59  E-value=2.4e-14  Score=130.15  Aligned_cols=161  Identities=22%  Similarity=0.219  Sum_probs=87.4

Q ss_pred             cchhhhhhhcccCceEEEeccccccccccchhhccccccCcccEEEeCCcccccccccCCCCccccccccceEEEEeccc
Q 036454          181 FFQVGLLQNIHNLEKLVLSTCEYKKIFSCEEVEEHAEGIAQIKSLKLKKLWLIEEHLWNPDSKLDSFLQNLEFLEVKKCA  260 (410)
Q Consensus       181 ~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~L~~L~l~~~~  260 (410)
                      ..+...+.++++|+.|+++++.+..+..       ...+++|++|++++.     .+.. .+..+..+++|++|++++| 
T Consensus        45 ~~~~~~~~~l~~L~~L~L~~n~l~~~~~-------~~~l~~L~~L~Ls~N-----~l~~-l~~~~~~l~~L~~L~l~~N-  110 (290)
T 1p9a_G           45 TFSLATLMPYTRLTQLNLDRAELTKLQV-------DGTLPVLGTLDLSHN-----QLQS-LPLLGQTLPALTVLDVSFN-  110 (290)
T ss_dssp             EEEGGGGTTCTTCCEEECTTSCCCEEEC-------CSCCTTCCEEECCSS-----CCSS-CCCCTTTCTTCCEEECCSS-
T ss_pred             ccCHHHhhcCCCCCEEECCCCccCcccC-------CCCCCcCCEEECCCC-----cCCc-CchhhccCCCCCEEECCCC-
Confidence            3333456677888888888777666544       245677777777762     2211 1223455667777777776 


Q ss_pred             ccccccc-cCccccCccCEEEEcccCCcccccchhhhhcCCCccEEEeccCcccchhcccc-CCCCccccccccceeecC
Q 036454          261 LSLISLV-PSSASFRNLTVLKVCNCWQLISLVTPQTAKTLVQLRELRVSECNRLEEIVAND-GDADDEIVFSKLKWLFLE  338 (410)
Q Consensus       261 ~~l~~l~-~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~-~~~~~~~~~~~L~~L~l~  338 (410)
                       .++.++ ..+..+++|++|+++++ .+..++. .....+++|+.|+++++ .++.++... ..      +++|+.|+++
T Consensus       111 -~l~~l~~~~~~~l~~L~~L~L~~N-~l~~~~~-~~~~~l~~L~~L~L~~N-~l~~l~~~~~~~------l~~L~~L~L~  180 (290)
T 1p9a_G          111 -RLTSLPLGALRGLGELQELYLKGN-ELKTLPP-GLLTPTPKLEKLSLANN-NLTELPAGLLNG------LENLDTLLLQ  180 (290)
T ss_dssp             -CCCCCCSSTTTTCTTCCEEECTTS-CCCCCCT-TTTTTCTTCCEEECTTS-CCSCCCTTTTTT------CTTCCEEECC
T ss_pred             -cCcccCHHHHcCCCCCCEEECCCC-CCCccCh-hhcccccCCCEEECCCC-cCCccCHHHhcC------cCCCCEEECC
Confidence             455544 23455666666666555 3544432 22345566666666653 344443322 23      5566666666


Q ss_pred             cCcccceecCCCcccCCCCccEEEEecCCC
Q 036454          339 SSESITSFCSGNYAFSFPSLEDLIVENCPK  368 (410)
Q Consensus       339 ~c~~l~~~~~~~~~~~~~~L~~L~l~~c~~  368 (410)
                      ++ .++.++...  ..+++|+.+++.++|.
T Consensus       181 ~N-~l~~ip~~~--~~~~~L~~l~L~~Np~  207 (290)
T 1p9a_G          181 EN-SLYTIPKGF--FGSHLLPFAFLHGNPW  207 (290)
T ss_dssp             SS-CCCCCCTTT--TTTCCCSEEECCSCCB
T ss_pred             CC-cCCccChhh--cccccCCeEEeCCCCc
Confidence            53 344444432  2345566666555443

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=99.56  E-value=3.9e-14  Score=132.38  Aligned_cols=220  Identities=15%  Similarity=0.108  Sum_probs=137.5

Q ss_pred             CccccccccccCCcEEEecCccccccccccCCc-cccccCcccEEEeccCcCccccCchhHHhhhhccceEeeccccCcc
Q 036454            9 NSEETHSGAATQLRELHVFHLPKLTKLWNKDPQ-GKLIFRNLVVVRIFDCQSLKNIFPTSIARSLLRLETLSIKDCGSVE   87 (410)
Q Consensus         9 ~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~-~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~   87 (410)
                      ...++|-+-.+++++|+++++ .++.+    |. .+..+++|++|++++|...+.+++.. +.++++++++...++..+.
T Consensus        20 ~Lt~iP~~l~~~l~~L~Ls~N-~i~~i----~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~-f~~L~~l~~~l~~~~N~l~   93 (350)
T 4ay9_X           20 KVTEIPSDLPRNAIELRFVLT-KLRVI----QKGAFSGFGDLEKIEISQNDVLEVIEADV-FSNLPKLHEIRIEKANNLL   93 (350)
T ss_dssp             TCCSCCTTCCTTCSEEEEESC-CCSEE----CTTSSTTCTTCCEEEEECCTTCCEECTTS-BCSCTTCCEEEEEEETTCC
T ss_pred             CCCccCcCcCCCCCEEEccCC-cCCCc----CHHHHcCCCCCCEEECcCCCCCCccChhH-hhcchhhhhhhcccCCccc
Confidence            334455444679999999997 56655    43 46789999999999996556554433 3578888887666666688


Q ss_pred             eEeccCCCCCCCcccccCCCccEEeeccCCCccccccCcccCCCCCceEEEEccC-----------Cc-cccccEEEeec
Q 036454           88 EIVANDGRGNDAATKFIFPSLTFLRLRDLPDLTTFYSGMHILECPELRKLEVNHV-----------DV-FANLEELTLSK  155 (410)
Q Consensus        88 ~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~~-----------~~-l~~L~~L~i~~  155 (410)
                      .++.        ..+..+++|++|+++++ .+..++..... ...++..+++.++           .. ...++.|++++
T Consensus        94 ~l~~--------~~f~~l~~L~~L~l~~n-~l~~~~~~~~~-~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~  163 (350)
T 4ay9_X           94 YINP--------EAFQNLPNLQYLLISNT-GIKHLPDVHKI-HSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNK  163 (350)
T ss_dssp             EECT--------TSBCCCTTCCEEEEEEE-CCSSCCCCTTC-CBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCS
T ss_pred             ccCc--------hhhhhcccccccccccc-ccccCCchhhc-ccchhhhhhhccccccccccccchhhcchhhhhhcccc
Confidence            8865        25677899999999998 56665544332 4456677777665           11 12456666666


Q ss_pred             cCcccccccc--cccccEEEE-EeCCCccchhhhhhhcccCceEEEeccccccccccchhhccccccCcccEEEeCCccc
Q 036454          156 CIFTTWRQAQ--FHKLKILHF-ISDGSDFFQVGLLQNIHNLEKLVLSTCEYKKIFSCEEVEEHAEGIAQIKSLKLKKLWL  232 (410)
Q Consensus       156 ~~~~~~~~~~--l~~L~~L~l-~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~  232 (410)
                      |.+..+++..  ..+|+.|++ .+..+..++...+.++++|+.|+++++++..+..        ..+.+|++|.+.++.+
T Consensus       164 N~i~~i~~~~f~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~~lp~--------~~~~~L~~L~~l~~~~  235 (350)
T 4ay9_X          164 NGIQEIHNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPS--------YGLENLKKLRARSTYN  235 (350)
T ss_dssp             SCCCEECTTSSTTEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSCCCCCCS--------SSCTTCCEEECTTCTT
T ss_pred             ccccCCChhhccccchhHHhhccCCcccCCCHHHhccCcccchhhcCCCCcCccCh--------hhhccchHhhhccCCC
Confidence            6666555443  445555555 3455556665555666666666666666555432        2345555555555554


Q ss_pred             ccccccCCCCccccccccceEEEEec
Q 036454          233 IEEHLWNPDSKLDSFLQNLEFLEVKK  258 (410)
Q Consensus       233 l~~~~~~~~~~~~~~~~~L~~L~l~~  258 (410)
                      + ..+     ..+..+++|+.+++.+
T Consensus       236 l-~~l-----P~l~~l~~L~~l~l~~  255 (350)
T 4ay9_X          236 L-KKL-----PTLEKLVALMEASLTY  255 (350)
T ss_dssp             C-CCC-----CCTTTCCSCCEEECSC
T ss_pred             c-CcC-----CCchhCcChhhCcCCC
Confidence            4 333     1234455555555544

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=99.56  E-value=3.1e-15  Score=139.05  Aligned_cols=164  Identities=16%  Similarity=0.102  Sum_probs=68.1

Q ss_pred             hhhcccCceEEEeccccccccccchhhccccccCcccEEEeCCcccccccccCCCCccccccccceEEEEecccccccc-
Q 036454          187 LQNIHNLEKLVLSTCEYKKIFSCEEVEEHAEGIAQIKSLKLKKLWLIEEHLWNPDSKLDSFLQNLEFLEVKKCALSLIS-  265 (410)
Q Consensus       187 l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~l~~-  265 (410)
                      +.++++|+.|++++|.+.....     ..+..+++|++|++++|..+ ...  .....+..+++|++|++++|. .++. 
T Consensus       114 ~~~~~~L~~L~L~~~~l~~~~~-----~~l~~~~~L~~L~L~~~~~l-~~~--~l~~~~~~~~~L~~L~l~~~~-~l~~~  184 (336)
T 2ast_B          114 LSQCSKLQNLSLEGLRLSDPIV-----NTLAKNSNLVRLNLSGCSGF-SEF--ALQTLLSSCSRLDELNLSWCF-DFTEK  184 (336)
T ss_dssp             HTTBCCCSEEECTTCBCCHHHH-----HHHTTCTTCSEEECTTCBSC-CHH--HHHHHHHHCTTCCEEECCCCT-TCCHH
T ss_pred             HhhCCCCCEEeCcCcccCHHHH-----HHHhcCCCCCEEECCCCCCC-CHH--HHHHHHhcCCCCCEEcCCCCC-CcChH
Confidence            3445555555555554332111     12233455555555554333 110  001123445555555555553 2322 


Q ss_pred             -cccCccccC-ccCEEEEcccC-CcccccchhhhhcCCCccEEEeccCcccc-hhccccCCCCccccccccceeecCcCc
Q 036454          266 -LVPSSASFR-NLTVLKVCNCW-QLISLVTPQTAKTLVQLRELRVSECNRLE-EIVANDGDADDEIVFSKLKWLFLESSE  341 (410)
Q Consensus       266 -l~~~~~~~~-~L~~L~l~~c~-~l~~~~~~~~~~~l~~L~~L~l~~c~~l~-~~~~~~~~~~~~~~~~~L~~L~l~~c~  341 (410)
                       ++..+..++ +|++|++++|. .+..-........+++|++|++++|..++ ..+..++.      +++|+.|++++|.
T Consensus       185 ~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~------l~~L~~L~l~~~~  258 (336)
T 2ast_B          185 HVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQ------LNYLQHLSLSRCY  258 (336)
T ss_dssp             HHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGG------CTTCCEEECTTCT
T ss_pred             HHHHHHHhcccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhC------CCCCCEeeCCCCC
Confidence             223334444 55555555543 22211111233445555555555554322 22333333      4555555555554


Q ss_pred             ccceecCCCcccCCCCccEEEEecC
Q 036454          342 SITSFCSGNYAFSFPSLEDLIVENC  366 (410)
Q Consensus       342 ~l~~~~~~~~~~~~~~L~~L~l~~c  366 (410)
                      .+.+.... ....+++|++|++.+|
T Consensus       259 ~~~~~~~~-~l~~~~~L~~L~l~~~  282 (336)
T 2ast_B          259 DIIPETLL-ELGEIPTLKTLQVFGI  282 (336)
T ss_dssp             TCCGGGGG-GGGGCTTCCEEECTTS
T ss_pred             CCCHHHHH-HHhcCCCCCEEeccCc
Confidence            33322111 1123555555555555

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=99.56  E-value=3.7e-15  Score=134.29  Aligned_cols=86  Identities=15%  Similarity=0.141  Sum_probs=40.3

Q ss_pred             hhhcccCceEEEeccccccccccchhhccccccCcccEEEeCCcccccccccCCCCccccccccceEEEEeccccccccc
Q 036454          187 LQNIHNLEKLVLSTCEYKKIFSCEEVEEHAEGIAQIKSLKLKKLWLIEEHLWNPDSKLDSFLQNLEFLEVKKCALSLISL  266 (410)
Q Consensus       187 l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~l~~l  266 (410)
                      +..+++|+.|++++|.+..+..     ..+..+++|+.|+++++     .+.......+..+++|++|++++|  .++.+
T Consensus       129 ~~~l~~L~~L~L~~n~l~~~~~-----~~~~~l~~L~~L~l~~n-----~l~~~~~~~~~~l~~L~~L~L~~N--~l~~~  196 (272)
T 3rfs_A          129 FDKLTNLTYLNLAHNQLQSLPK-----GVFDKLTNLTELDLSYN-----QLQSLPEGVFDKLTQLKDLRLYQN--QLKSV  196 (272)
T ss_dssp             TTTCTTCCEEECCSSCCCCCCT-----TTTTTCTTCCEEECCSS-----CCCCCCTTTTTTCTTCCEEECCSS--CCSCC
T ss_pred             hccCCCCCEEECCCCccCccCH-----HHhccCccCCEEECCCC-----CcCccCHHHhcCCccCCEEECCCC--cCCcc
Confidence            4555666666666665554432     12234555555555553     121111222344555555555555  23333


Q ss_pred             ccC-ccccCccCEEEEccc
Q 036454          267 VPS-SASFRNLTVLKVCNC  284 (410)
Q Consensus       267 ~~~-~~~~~~L~~L~l~~c  284 (410)
                      ++. +..+++|++|+++++
T Consensus       197 ~~~~~~~l~~L~~L~l~~N  215 (272)
T 3rfs_A          197 PDGVFDRLTSLQYIWLHDN  215 (272)
T ss_dssp             CTTTTTTCTTCCEEECCSS
T ss_pred             CHHHHhCCcCCCEEEccCC
Confidence            322 344555555555444

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=99.56  E-value=6e-14  Score=126.18  Aligned_cols=201  Identities=20%  Similarity=0.190  Sum_probs=110.0

Q ss_pred             ccCcccEEEeccCcCccccCchhHHhhhhccceEeeccccCcceEeccCCCCCCCcccccCCCccEEeeccCCCcccccc
Q 036454           45 IFRNLVVVRIFDCQSLKNIFPTSIARSLLRLETLSIKDCGSVEEIVANDGRGNDAATKFIFPSLTFLRLRDLPDLTTFYS  124 (410)
Q Consensus        45 ~l~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~  124 (410)
                      +..+.+++++++. .++.+|..    -.+++++|+++++. +..++.        ..+..+++|++|+++++ .+..++.
T Consensus        14 c~~~~~~l~~~~~-~l~~ip~~----~~~~l~~L~l~~n~-l~~~~~--------~~~~~l~~L~~L~l~~n-~l~~i~~   78 (270)
T 2o6q_A           14 CNNNKNSVDCSSK-KLTAIPSN----IPADTKKLDLQSNK-LSSLPS--------KAFHRLTKLRLLYLNDN-KLQTLPA   78 (270)
T ss_dssp             EETTTTEEECTTS-CCSSCCSC----CCTTCSEEECCSSC-CSCCCT--------TSSSSCTTCCEEECCSS-CCSCCCT
T ss_pred             eCCCCCEEEccCC-CCCccCCC----CCCCCCEEECcCCC-CCeeCH--------HHhcCCCCCCEEECCCC-ccCeeCh
Confidence            4456888998877 56666442    23679999999886 766654        24667889999999887 5555554


Q ss_pred             CcccCCCCCceEEEEccCCccccccEEEeeccCcccccccccccccEEEEEeCCCccchhhhhhhcccCceEEEeccccc
Q 036454          125 GMHILECPELRKLEVNHVDVFANLEELTLSKCIFTTWRQAQFHKLKILHFISDGSDFFQVGLLQNIHNLEKLVLSTCEYK  204 (410)
Q Consensus       125 ~~~~~~~~~L~~L~l~~~~~l~~L~~L~i~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~  204 (410)
                      ..+. .+              ++|++|++++|.+..+++                     ..+..+++|+.|+++++.+.
T Consensus        79 ~~~~-~l--------------~~L~~L~l~~n~l~~~~~---------------------~~~~~l~~L~~L~l~~n~l~  122 (270)
T 2o6q_A           79 GIFK-EL--------------KNLETLWVTDNKLQALPI---------------------GVFDQLVNLAELRLDRNQLK  122 (270)
T ss_dssp             TTTS-SC--------------TTCCEEECCSSCCCCCCT---------------------TTTTTCSSCCEEECCSSCCC
T ss_pred             hhhc-CC--------------CCCCEEECCCCcCCcCCH---------------------hHcccccCCCEEECCCCccC
Confidence            4322 23              445555555554443332                     23344555555555555544


Q ss_pred             cccccchhhccccccCcccEEEeCCcccccccccCCCCccccccccceEEEEecccccccccccC-ccccCccCEEEEcc
Q 036454          205 KIFSCEEVEEHAEGIAQIKSLKLKKLWLIEEHLWNPDSKLDSFLQNLEFLEVKKCALSLISLVPS-SASFRNLTVLKVCN  283 (410)
Q Consensus       205 ~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~l~~l~~~-~~~~~~L~~L~l~~  283 (410)
                      .+..     ..+..+++|++|+++++     .+.......+..+++|++|++++|  .++.+++. +..+++|++|++++
T Consensus       123 ~~~~-----~~~~~l~~L~~L~Ls~n-----~l~~~~~~~~~~l~~L~~L~L~~n--~l~~~~~~~~~~l~~L~~L~L~~  190 (270)
T 2o6q_A          123 SLPP-----RVFDSLTKLTYLSLGYN-----ELQSLPKGVFDKLTSLKELRLYNN--QLKRVPEGAFDKLTELKTLKLDN  190 (270)
T ss_dssp             CCCT-----TTTTTCTTCCEEECCSS-----CCCCCCTTTTTTCTTCCEEECCSS--CCSCCCTTTTTTCTTCCEEECCS
T ss_pred             eeCH-----HHhCcCcCCCEEECCCC-----cCCccCHhHccCCcccceeEecCC--cCcEeChhHhccCCCcCEEECCC
Confidence            4322     12334555555555552     221111222445566666666665  34444332 34556666666655


Q ss_pred             cCCcccccchhhhhcCCCccEEEeccC
Q 036454          284 CWQLISLVTPQTAKTLVQLRELRVSEC  310 (410)
Q Consensus       284 c~~l~~~~~~~~~~~l~~L~~L~l~~c  310 (410)
                      + .++.++. .....+++|+.|+++++
T Consensus       191 N-~l~~~~~-~~~~~l~~L~~L~l~~N  215 (270)
T 2o6q_A          191 N-QLKRVPE-GAFDSLEKLKMLQLQEN  215 (270)
T ss_dssp             S-CCSCCCT-TTTTTCTTCCEEECCSS
T ss_pred             C-cCCcCCH-HHhccccCCCEEEecCC
Confidence            4 3444432 22345566666666553

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=99.55  E-value=6.5e-14  Score=126.35  Aligned_cols=199  Identities=19%  Similarity=0.193  Sum_probs=114.0

Q ss_pred             ccccEEEeeccCcccccccc---cccccEEEEEeCCCccchhhhhhhcccCceEEEeccccccccccchhhccccccCcc
Q 036454          146 ANLEELTLSKCIFTTWRQAQ---FHKLKILHFISDGSDFFQVGLLQNIHNLEKLVLSTCEYKKIFSCEEVEEHAEGIAQI  222 (410)
Q Consensus       146 ~~L~~L~i~~~~~~~~~~~~---l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~L  222 (410)
                      +++++|++++|.+....+..   +++|+.|+++...+...+...+.++++|+.|++++|.+..+..     ..+.++++|
T Consensus        28 ~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~-----~~~~~l~~L  102 (276)
T 2z62_A           28 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLAL-----GAFSGLSSL  102 (276)
T ss_dssp             TTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECT-----TTTTTCTTC
T ss_pred             CCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccCh-----hhhcCCccc
Confidence            45677777777666555422   6677777775555666665556677777777777776655542     134566777


Q ss_pred             cEEEeCCcccccccccCCCCccccccccceEEEEecccccccc--cccCccccCccCEEEEcccCCcccccchhhhhcCC
Q 036454          223 KSLKLKKLWLIEEHLWNPDSKLDSFLQNLEFLEVKKCALSLIS--LVPSSASFRNLTVLKVCNCWQLISLVTPQTAKTLV  300 (410)
Q Consensus       223 ~~L~l~~c~~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~l~~--l~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~  300 (410)
                      ++|+++++.     +.......+..+++|++|++++|  .++.  ++..+..+++|++|+++++ .++.++. .....++
T Consensus       103 ~~L~l~~n~-----l~~~~~~~~~~l~~L~~L~l~~n--~l~~~~l~~~~~~l~~L~~L~Ls~N-~l~~~~~-~~~~~l~  173 (276)
T 2z62_A          103 QKLVAVETN-----LASLENFPIGHLKTLKELNVAHN--LIQSFKLPEYFSNLTNLEHLDLSSN-KIQSIYC-TDLRVLH  173 (276)
T ss_dssp             CEEECTTSC-----CCCSTTCCCTTCTTCCEEECCSS--CCCCCCCCGGGGGCTTCCEEECCSS-CCCEECG-GGGHHHH
T ss_pred             cEEECCCCC-----ccccCchhcccCCCCCEEECcCC--ccceecCchhhccCCCCCEEECCCC-CCCcCCH-HHhhhhh
Confidence            777777632     21112223556677777777777  3433  4455666677777777665 3444432 1222333


Q ss_pred             Ccc----EEEeccCcccchhccccCCCCccccccccceeecCcCcccceecCCCcccCCCCccEEEEecCC
Q 036454          301 QLR----ELRVSECNRLEEIVANDGDADDEIVFSKLKWLFLESSESITSFCSGNYAFSFPSLEDLIVENCP  367 (410)
Q Consensus       301 ~L~----~L~l~~c~~l~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~l~~c~  367 (410)
                      +|+    +|+++++ .++.++.....      ..+|+.|+++++. ++.++.. .+..+++|++|++.+++
T Consensus       174 ~L~~l~l~L~ls~n-~l~~~~~~~~~------~~~L~~L~L~~n~-l~~~~~~-~~~~l~~L~~L~l~~N~  235 (276)
T 2z62_A          174 QMPLLNLSLDLSLN-PMNFIQPGAFK------EIRLKELALDTNQ-LKSVPDG-IFDRLTSLQKIWLHTNP  235 (276)
T ss_dssp             TCTTCCEEEECCSS-CCCEECTTSSC------SCCEEEEECCSSC-CSCCCTT-TTTTCCSCCEEECCSSC
T ss_pred             hccccceeeecCCC-cccccCccccC------CCcccEEECCCCc-eeecCHh-HhcccccccEEEccCCc
Confidence            333    6666653 34444433333      4467777777643 5555443 23456677777776543

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=99.49  E-value=1.7e-13  Score=125.86  Aligned_cols=207  Identities=16%  Similarity=0.037  Sum_probs=132.0

Q ss_pred             cccccEEEEEeCCCccchhhhh--hhcccCceEEEeccccccccccchhhccccccCcccEEEeCCcccccccccCCCCc
Q 036454          166 FHKLKILHFISDGSDFFQVGLL--QNIHNLEKLVLSTCEYKKIFSCEEVEEHAEGIAQIKSLKLKKLWLIEEHLWNPDSK  243 (410)
Q Consensus       166 l~~L~~L~l~~~~~~~~~~~~l--~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~  243 (410)
                      +++|++|++....+.......+  ..+++|+.|++++|.+...... ........+++|++|+++++     .+......
T Consensus        90 ~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~-~~~~~~~~~~~L~~L~Ls~n-----~l~~~~~~  163 (310)
T 4glp_A           90 YSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSW-LAELQQWLKPGLKVLSIAQA-----HSPAFSCE  163 (310)
T ss_dssp             HSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSS-HHHHHTTBCSCCCEEEEECC-----SSCCCCTT
T ss_pred             cCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhh-hHHHHhhhccCCCEEEeeCC-----CcchhhHH
Confidence            3445555553333332222223  6778889999988876653220 11122346788999999884     33223344


Q ss_pred             cccccccceEEEEecccccccc--cc--cCccccCccCEEEEcccCCcccccch--hhhhcCCCccEEEeccCcccchhc
Q 036454          244 LDSFLQNLEFLEVKKCALSLIS--LV--PSSASFRNLTVLKVCNCWQLISLVTP--QTAKTLVQLRELRVSECNRLEEIV  317 (410)
Q Consensus       244 ~~~~~~~L~~L~l~~~~~~l~~--l~--~~~~~~~~L~~L~l~~c~~l~~~~~~--~~~~~l~~L~~L~l~~c~~l~~~~  317 (410)
                      .+..+++|++|++++|. ....  ++  ...+.+++|++|++++| +++.++..  .....+++|++|+++++.-....|
T Consensus       164 ~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~~~~~l~~L~~L~Ls~N-~l~~l~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p  241 (310)
T 4glp_A          164 QVRAFPALTSLDLSDNP-GLGERGLMAALCPHKFPAIQNLALRNT-GMETPTGVCAALAAAGVQPHSLDLSHNSLRATVN  241 (310)
T ss_dssp             SCCCCTTCCEEECCSCT-TCHHHHHHTTSCTTSSCCCCSCBCCSS-CCCCHHHHHHHHHHHTCCCSSEECTTSCCCCCCC
T ss_pred             HhccCCCCCEEECCCCC-CccchhhhHHHhhhcCCCCCEEECCCC-CCCchHHHHHHHHhcCCCCCEEECCCCCCCccch
Confidence            56788899999999985 3221  22  22367889999999887 46555421  123678999999999864333335


Q ss_pred             cccCCCCccccccccceeecCcCcccceecCCCcccCCCCccEEEEecCCCCcccCCCCCCCCCcceeEeccc
Q 036454          318 ANDGDADDEIVFSKLKWLFLESSESITSFCSGNYAFSFPSLEDLIVENCPKLNTFSAGVLKTPRLQAVQNWEL  390 (410)
Q Consensus       318 ~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~L~~l~~~~~  390 (410)
                      ..+..   ...+++|++|+++++ .++.++...    .++|++|++++| .++.+|. ...+++|++|++++|
T Consensus       242 ~~~~~---~~~~~~L~~L~Ls~N-~l~~lp~~~----~~~L~~L~Ls~N-~l~~~~~-~~~l~~L~~L~L~~N  304 (310)
T 4glp_A          242 PSAPR---CMWSSALNSLNLSFA-GLEQVPKGL----PAKLRVLDLSSN-RLNRAPQ-PDELPEVDNLTLDGN  304 (310)
T ss_dssp             SCCSS---CCCCTTCCCEECCSS-CCCSCCSCC----CSCCSCEECCSC-CCCSCCC-TTSCCCCSCEECSST
T ss_pred             hhHHh---ccCcCcCCEEECCCC-CCCchhhhh----cCCCCEEECCCC-cCCCCch-hhhCCCccEEECcCC
Confidence            54444   001379999999985 577776543    489999999887 5666665 456899999999733

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=99.47  E-value=4.9e-15  Score=140.46  Aligned_cols=118  Identities=16%  Similarity=0.060  Sum_probs=70.3

Q ss_pred             hhhhcccCceEEEeccccccccccchhhccccccCcccEEEeCCccccc---ccccCCCCccccccccceEEEEeccccc
Q 036454          186 LLQNIHNLEKLVLSTCEYKKIFSCEEVEEHAEGIAQIKSLKLKKLWLIE---EHLWNPDSKLDSFLQNLEFLEVKKCALS  262 (410)
Q Consensus       186 ~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~---~~~~~~~~~~~~~~~~L~~L~l~~~~~~  262 (410)
                      .+..+++|+.|++++|.+.........+..+..+++|++|+++++...+   ..+    ...+..+++|++|++++|.  
T Consensus       182 ~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l----~~~l~~~~~L~~L~L~~n~--  255 (386)
T 2ca6_A          182 TFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSAL----AIALKSWPNLRELGLNDCL--  255 (386)
T ss_dssp             HHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHH----HHHGGGCTTCCEEECTTCC--
T ss_pred             HHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHH----HHHHccCCCcCEEECCCCC--
Confidence            4567778888888887765221000111134567788888888754310   011    2345677888888888884  


Q ss_pred             ccc-----cccCc--cccCccCEEEEcccCCccc-----ccchhhhhcCCCccEEEeccCc
Q 036454          263 LIS-----LVPSS--ASFRNLTVLKVCNCWQLIS-----LVTPQTAKTLVQLRELRVSECN  311 (410)
Q Consensus       263 l~~-----l~~~~--~~~~~L~~L~l~~c~~l~~-----~~~~~~~~~l~~L~~L~l~~c~  311 (410)
                      ++.     ++..+  +.+++|++|++++|. +..     ++. .....+++|++|++++|.
T Consensus       256 i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~-i~~~g~~~l~~-~l~~~l~~L~~L~l~~N~  314 (386)
T 2ca6_A          256 LSARGAAAVVDAFSKLENIGLQTLRLQYNE-IELDAVRTLKT-VIDEKMPDLLFLELNGNR  314 (386)
T ss_dssp             CCHHHHHHHHHHHHTCSSCCCCEEECCSSC-CBHHHHHHHHH-HHHHHCTTCCEEECTTSB
T ss_pred             CchhhHHHHHHHHhhccCCCeEEEECcCCc-CCHHHHHHHHH-HHHhcCCCceEEEccCCc
Confidence            332     23333  237888888887773 554     321 222557888888888864

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=99.43  E-value=1.3e-12  Score=115.97  Aligned_cols=170  Identities=17%  Similarity=0.154  Sum_probs=76.6

Q ss_pred             cEEEeeccCcccccccccccccEEEEEeCCCccchhhhhhhcccCceEEEeccccccccccchhhccccccCcccEEEeC
Q 036454          149 EELTLSKCIFTTWRQAQFHKLKILHFISDGSDFFQVGLLQNIHNLEKLVLSTCEYKKIFSCEEVEEHAEGIAQIKSLKLK  228 (410)
Q Consensus       149 ~~L~i~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~  228 (410)
                      +.++.+++....++....++++.|++....+...+...+.++++|+.|+++++.+..+..     ..+..+++|++|+++
T Consensus        17 ~~l~~~~~~l~~~p~~~~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~-----~~~~~l~~L~~L~L~   91 (251)
T 3m19_A           17 KEVDCQGKSLDSVPSGIPADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSA-----GVFDDLTELGTLGLA   91 (251)
T ss_dssp             TEEECTTCCCSSCCSCCCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCT-----TTTTTCTTCCEEECT
T ss_pred             eEEecCCCCccccCCCCCCCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCH-----hHhccCCcCCEEECC
Confidence            334444433333333223334444443333333333344555666666666655544432     123445556666665


Q ss_pred             CcccccccccCCCCccccccccceEEEEecccccccccccC-ccccCccCEEEEcccCCcccccchhhhhcCCCccEEEe
Q 036454          229 KLWLIEEHLWNPDSKLDSFLQNLEFLEVKKCALSLISLVPS-SASFRNLTVLKVCNCWQLISLVTPQTAKTLVQLRELRV  307 (410)
Q Consensus       229 ~c~~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~l~~l~~~-~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l  307 (410)
                      +     +.+.......+..+++|++|++++|  .++.+++. +..+++|++|+++++ ++..++. .....+++|++|++
T Consensus        92 ~-----n~l~~~~~~~~~~l~~L~~L~L~~N--~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~-~~~~~l~~L~~L~L  162 (251)
T 3m19_A           92 N-----NQLASLPLGVFDHLTQLDKLYLGGN--QLKSLPSGVFDRLTKLKELRLNTN-QLQSIPA-GAFDKLTNLQTLSL  162 (251)
T ss_dssp             T-----SCCCCCCTTTTTTCTTCCEEECCSS--CCCCCCTTTTTTCTTCCEEECCSS-CCCCCCT-TTTTTCTTCCEEEC
T ss_pred             C-----CcccccChhHhcccCCCCEEEcCCC--cCCCcChhHhccCCcccEEECcCC-cCCccCH-HHcCcCcCCCEEEC
Confidence            5     2222112233445556666666655  34444432 244555555555544 3444432 22344555555555


Q ss_pred             ccCcccchhcc-ccCCCCccccccccceeecCc
Q 036454          308 SECNRLEEIVA-NDGDADDEIVFSKLKWLFLES  339 (410)
Q Consensus       308 ~~c~~l~~~~~-~~~~~~~~~~~~~L~~L~l~~  339 (410)
                      +++ .++.++. .+..      +++|+.|++++
T Consensus       163 ~~N-~l~~~~~~~~~~------l~~L~~L~l~~  188 (251)
T 3m19_A          163 STN-QLQSVPHGAFDR------LGKLQTITLFG  188 (251)
T ss_dssp             CSS-CCSCCCTTTTTT------CTTCCEEECCS
T ss_pred             CCC-cCCccCHHHHhC------CCCCCEEEeeC
Confidence            553 2222222 2333      45555555555

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=99.43  E-value=1.6e-13  Score=130.01  Aligned_cols=164  Identities=13%  Similarity=0.067  Sum_probs=100.8

Q ss_pred             ccCceEEEeccccccccccchhhccccccCcccEEEeCCcccccccccCCCCccccccccceEEEEecccccc----ccc
Q 036454          191 HNLEKLVLSTCEYKKIFSCEEVEEHAEGIAQIKSLKLKKLWLIEEHLWNPDSKLDSFLQNLEFLEVKKCALSL----ISL  266 (410)
Q Consensus       191 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~l----~~l  266 (410)
                      ++|+.|++++|.+...... .....+..+++|++|++++|...+..+.......+..+++|++|++++|. .-    ..+
T Consensus       159 ~~L~~L~L~~n~l~~~~~~-~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~-l~~~g~~~l  236 (386)
T 2ca6_A          159 PPLRSIICGRNRLENGSMK-EWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNT-FTHLGSSAL  236 (386)
T ss_dssp             CCCCEEECCSSCCTGGGHH-HHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSC-CHHHHHHHH
T ss_pred             CCCcEEECCCCCCCcHHHH-HHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCC-CCcHHHHHH
Confidence            8999999999886522110 01113446789999999986322000000001146678999999999995 21    445


Q ss_pred             ccCccccCccCEEEEcccCCcccccch---hhh--hcCCCccEEEeccCcccc----hhcccc-CCCCccccccccceee
Q 036454          267 VPSSASFRNLTVLKVCNCWQLISLVTP---QTA--KTLVQLRELRVSECNRLE----EIVAND-GDADDEIVFSKLKWLF  336 (410)
Q Consensus       267 ~~~~~~~~~L~~L~l~~c~~l~~~~~~---~~~--~~l~~L~~L~l~~c~~l~----~~~~~~-~~~~~~~~~~~L~~L~  336 (410)
                      +..+..+++|++|++++|. +......   ..+  ..+++|++|++++|.--.    .++..+ ..      +++|++|+
T Consensus       237 ~~~l~~~~~L~~L~L~~n~-i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~------l~~L~~L~  309 (386)
T 2ca6_A          237 AIALKSWPNLRELGLNDCL-LSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEK------MPDLLFLE  309 (386)
T ss_dssp             HHHGGGCTTCCEEECTTCC-CCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHH------CTTCCEEE
T ss_pred             HHHHccCCCcCEEECCCCC-CchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhc------CCCceEEE
Confidence            6666788999999998884 5544211   222  238999999999874333    255544 33      79999999


Q ss_pred             cCcCcccceec--CCCcccCCCCccEEEEe
Q 036454          337 LESSESITSFC--SGNYAFSFPSLEDLIVE  364 (410)
Q Consensus       337 l~~c~~l~~~~--~~~~~~~~~~L~~L~l~  364 (410)
                      +++++ ++...  .......++.++...+.
T Consensus       310 l~~N~-l~~~~~~~~~l~~~l~~~~~~~l~  338 (386)
T 2ca6_A          310 LNGNR-FSEEDDVVDEIREVFSTRGRGELD  338 (386)
T ss_dssp             CTTSB-SCTTSHHHHHHHHHHHHHTCCEEC
T ss_pred             ccCCc-CCcchhHHHHHHHHhhhcCcchhh
Confidence            99965 44332  12223335666555553

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=99.42  E-value=8.4e-13  Score=119.99  Aligned_cols=170  Identities=19%  Similarity=0.243  Sum_probs=89.7

Q ss_pred             cccccCCcEEEecCccccccccccCCccccccCcccEEEeccCcCccccCchhHHhhhhccceEeeccccCcceEeccCC
Q 036454           15 SGAATQLRELHVFHLPKLTKLWNKDPQGKLIFRNLVVVRIFDCQSLKNIFPTSIARSLLRLETLSIKDCGSVEEIVANDG   94 (410)
Q Consensus        15 ~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~   94 (410)
                      ...+++|+.|+++++ .++.+     +++..+++|++|++++| .+..+++   ..++++|++|+++++. +..++    
T Consensus        42 ~~~l~~L~~L~l~~~-~i~~~-----~~~~~l~~L~~L~L~~n-~l~~~~~---l~~l~~L~~L~l~~n~-l~~~~----  106 (291)
T 1h6t_A           42 QNELNSIDQIIANNS-DIKSV-----QGIQYLPNVTKLFLNGN-KLTDIKP---LANLKNLGWLFLDENK-VKDLS----  106 (291)
T ss_dssp             HHHHHTCCEEECTTS-CCCCC-----TTGGGCTTCCEEECCSS-CCCCCGG---GTTCTTCCEEECCSSC-CCCGG----
T ss_pred             hhhcCcccEEEccCC-CcccC-----hhHhcCCCCCEEEccCC-ccCCCcc---cccCCCCCEEECCCCc-CCCCh----
Confidence            445566666666655 22221     23445566666666655 3444433   1455666666666554 44332    


Q ss_pred             CCCCCcccccCCCccEEeeccCCCccccccCcccCCCCCceEEEEccCCccccccEEEeeccCcccccccccccccEEEE
Q 036454           95 RGNDAATKFIFPSLTFLRLRDLPDLTTFYSGMHILECPELRKLEVNHVDVFANLEELTLSKCIFTTWRQAQFHKLKILHF  174 (410)
Q Consensus        95 ~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~l~~L~~L~i~~~~~~~~~~~~l~~L~~L~l  174 (410)
                            .+..+++|+.|+++++ .+..++.  + ..+              ++|+.|++++|.+                
T Consensus       107 ------~l~~l~~L~~L~L~~n-~i~~~~~--l-~~l--------------~~L~~L~l~~n~l----------------  146 (291)
T 1h6t_A          107 ------SLKDLKKLKSLSLEHN-GISDING--L-VHL--------------PQLESLYLGNNKI----------------  146 (291)
T ss_dssp             ------GGTTCTTCCEEECTTS-CCCCCGG--G-GGC--------------TTCCEEECCSSCC----------------
T ss_pred             ------hhccCCCCCEEECCCC-cCCCChh--h-cCC--------------CCCCEEEccCCcC----------------
Confidence                  3444555666655555 3332211  0 011              3333334433333                


Q ss_pred             EeCCCccchhhhhhhcccCceEEEeccccccccccchhhccccccCcccEEEeCCcccccccccCCCCccccccccceEE
Q 036454          175 ISDGSDFFQVGLLQNIHNLEKLVLSTCEYKKIFSCEEVEEHAEGIAQIKSLKLKKLWLIEEHLWNPDSKLDSFLQNLEFL  254 (410)
Q Consensus       175 ~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~L~~L  254 (410)
                           ...  ..+..+++|+.|++++|.+..+..       +..+++|+.|+++++     .+..  ...+..+++|+.|
T Consensus       147 -----~~~--~~l~~l~~L~~L~L~~N~l~~~~~-------l~~l~~L~~L~L~~N-----~i~~--l~~l~~l~~L~~L  205 (291)
T 1h6t_A          147 -----TDI--TVLSRLTKLDTLSLEDNQISDIVP-------LAGLTKLQNLYLSKN-----HISD--LRALAGLKNLDVL  205 (291)
T ss_dssp             -----CCC--GGGGGCTTCSEEECCSSCCCCCGG-------GTTCTTCCEEECCSS-----CCCB--CGGGTTCTTCSEE
T ss_pred             -----Ccc--hhhccCCCCCEEEccCCccccchh-------hcCCCccCEEECCCC-----cCCC--ChhhccCCCCCEE
Confidence                 232  245667777777777777665543       556677788877773     2211  1235667788888


Q ss_pred             EEeccc
Q 036454          255 EVKKCA  260 (410)
Q Consensus       255 ~l~~~~  260 (410)
                      ++++|.
T Consensus       206 ~l~~n~  211 (291)
T 1h6t_A          206 ELFSQE  211 (291)
T ss_dssp             EEEEEE
T ss_pred             ECcCCc
Confidence            888874

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=99.42  E-value=3e-13  Score=124.17  Aligned_cols=193  Identities=15%  Similarity=0.135  Sum_probs=123.8

Q ss_pred             ccCcccEEEeccCcCccccCchhHH-hhhhccceEeeccccCcceEeccCCCCCCCcccccCCCccEEeeccCCCccccc
Q 036454           45 IFRNLVVVRIFDCQSLKNIFPTSIA-RSLLRLETLSIKDCGSVEEIVANDGRGNDAATKFIFPSLTFLRLRDLPDLTTFY  123 (410)
Q Consensus        45 ~l~~L~~L~l~~~~~l~~~~~~~~~-~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~  123 (410)
                      .+++|++|++++| .+....+..++ .++++|++|+++++. +.....    ......+..+++|++|+++++ .+...+
T Consensus        89 ~~~~L~~L~l~~n-~l~~~~~~~~~~~~~~~L~~L~Ls~n~-i~~~~~----~~~~~~~~~~~~L~~L~Ls~n-~l~~~~  161 (310)
T 4glp_A           89 AYSRLKELTLEDL-KITGTMPPLPLEATGLALSSLRLRNVS-WATGRS----WLAELQQWLKPGLKVLSIAQA-HSPAFS  161 (310)
T ss_dssp             HHSCCCEEEEESC-CCBSCCCCCSSSCCCBCCSSCEEESCC-CSSTTS----SHHHHHTTBCSCCCEEEEECC-SSCCCC
T ss_pred             ccCceeEEEeeCC-EeccchhhhhhhccCCCCCEEEeeccc-ccchhh----hhHHHHhhhccCCCEEEeeCC-Ccchhh
Confidence            3466788888777 34433343332 467778888887765 432110    000002234677788888776 445554


Q ss_pred             cCcccCCCCCceEEEEccC--------------CccccccEEEeeccCccccccc------ccccccEEEEEeCCCccch
Q 036454          124 SGMHILECPELRKLEVNHV--------------DVFANLEELTLSKCIFTTWRQA------QFHKLKILHFISDGSDFFQ  183 (410)
Q Consensus       124 ~~~~~~~~~~L~~L~l~~~--------------~~l~~L~~L~i~~~~~~~~~~~------~l~~L~~L~l~~~~~~~~~  183 (410)
                      ...+. .+++|++|+++++              ..+++|++|++++|.+......      .+++|+.|+++.+.+....
T Consensus       162 ~~~~~-~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~~l~~L~~L~Ls~N~l~~~~  240 (310)
T 4glp_A          162 CEQVR-AFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPTGVCAALAAAGVQPHSLDLSHNSLRATV  240 (310)
T ss_dssp             TTSCC-CCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHHHHHHHHHHHTCCCSSEECTTSCCCCCC
T ss_pred             HHHhc-cCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCchHHHHHHHHhcCCCCCEEECCCCCCCccc
Confidence            44433 5677888877776              2467788888988888654432      1689999999666655542


Q ss_pred             hhhhhhc---ccCceEEEeccccccccccchhhccccccCcccEEEeCCcccccccccCCCCccccccccceEEEEeccc
Q 036454          184 VGLLQNI---HNLEKLVLSTCEYKKIFSCEEVEEHAEGIAQIKSLKLKKLWLIEEHLWNPDSKLDSFLQNLEFLEVKKCA  260 (410)
Q Consensus       184 ~~~l~~l---~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~L~~L~l~~~~  260 (410)
                      ...+..+   ++|+.|++++|.+..++.        ...++|+.|++++     +.+..  ......+++|++|++++|+
T Consensus       241 p~~~~~~~~~~~L~~L~Ls~N~l~~lp~--------~~~~~L~~L~Ls~-----N~l~~--~~~~~~l~~L~~L~L~~N~  305 (310)
T 4glp_A          241 NPSAPRCMWSSALNSLNLSFAGLEQVPK--------GLPAKLRVLDLSS-----NRLNR--APQPDELPEVDNLTLDGNP  305 (310)
T ss_dssp             CSCCSSCCCCTTCCCEECCSSCCCSCCS--------CCCSCCSCEECCS-----CCCCS--CCCTTSCCCCSCEECSSTT
T ss_pred             hhhHHhccCcCcCCEEECCCCCCCchhh--------hhcCCCCEEECCC-----CcCCC--CchhhhCCCccEEECcCCC
Confidence            1223333   799999999999886644        1238999999998     44421  1235778999999999995

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=99.41  E-value=2e-13  Score=128.16  Aligned_cols=257  Identities=15%  Similarity=0.049  Sum_probs=135.7

Q ss_pred             EEeccCcCccccCchhHHhhhhccceEeeccccCcceEeccCCCCCCCcccccCC-CccEEeeccCCCccccccCcccCC
Q 036454           52 VRIFDCQSLKNIFPTSIARSLLRLETLSIKDCGSVEEIVANDGRGNDAATKFIFP-SLTFLRLRDLPDLTTFYSGMHILE  130 (410)
Q Consensus        52 L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~l~-~L~~L~l~~~~~l~~~~~~~~~~~  130 (410)
                      ..++.+ .+....+ .+....++|++|+++++. +...+...    ....+..++ +|++|+++++ .+.......+...
T Consensus         3 ~~ls~n-~~~~~~~-~~~~~~~~L~~L~Ls~n~-l~~~~~~~----l~~~l~~~~~~L~~L~Ls~N-~l~~~~~~~l~~~   74 (362)
T 3goz_A            3 YKLTLH-PGSNPVE-EFTSIPHGVTSLDLSLNN-LYSISTVE----LIQAFANTPASVTSLNLSGN-SLGFKNSDELVQI   74 (362)
T ss_dssp             EECCCC-TTCCHHH-HHHTSCTTCCEEECTTSC-GGGSCHHH----HHHHHHTCCTTCCEEECCSS-CGGGSCHHHHHHH
T ss_pred             cccccc-cchHHHH-HHHhCCCCceEEEccCCC-CChHHHHH----HHHHHHhCCCceeEEECcCC-CCCHHHHHHHHHH
Confidence            445555 3443323 233445559999999886 66544200    001445667 8999999988 5554322221100


Q ss_pred             CCCceEEEEccCCccccccEEEeeccCcccccccc-------c-ccccEEEEEeCCCccchhhhhh----h-cccCceEE
Q 036454          131 CPELRKLEVNHVDVFANLEELTLSKCIFTTWRQAQ-------F-HKLKILHFISDGSDFFQVGLLQ----N-IHNLEKLV  197 (410)
Q Consensus       131 ~~~L~~L~l~~~~~l~~L~~L~i~~~~~~~~~~~~-------l-~~L~~L~l~~~~~~~~~~~~l~----~-l~~L~~L~  197 (410)
                      +.          ...++|++|++++|.+.......       . ++|+.|+++.+.+...+...+.    . .++|+.|+
T Consensus        75 l~----------~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~  144 (362)
T 3goz_A           75 LA----------AIPANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLN  144 (362)
T ss_dssp             HH----------TSCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEE
T ss_pred             Hh----------ccCCCccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEE
Confidence            00          00134555555555544332221       2 5677777755555554443333    2 25888888


Q ss_pred             EeccccccccccchhhccccccC-cccEEEeCCcccccccccCCCCc----ccccc-ccceEEEEecccccccc-----c
Q 036454          198 LSTCEYKKIFSCEEVEEHAEGIA-QIKSLKLKKLWLIEEHLWNPDSK----LDSFL-QNLEFLEVKKCALSLIS-----L  266 (410)
Q Consensus       198 l~~~~~~~~~~~~~~~~~~~~l~-~L~~L~l~~c~~l~~~~~~~~~~----~~~~~-~~L~~L~l~~~~~~l~~-----l  266 (410)
                      +++|.+.......+ ...+..++ +|++|+++++.-.     ..+..    .+..+ ++|++|++++|.  +..     +
T Consensus       145 Ls~N~l~~~~~~~l-~~~l~~~~~~L~~L~Ls~n~l~-----~~~~~~l~~~l~~~~~~L~~L~Ls~N~--i~~~~~~~l  216 (362)
T 3goz_A          145 LRGNDLGIKSSDEL-IQILAAIPANVNSLNLRGNNLA-----SKNCAELAKFLASIPASVTSLDLSANL--LGLKSYAEL  216 (362)
T ss_dssp             CTTSCGGGSCHHHH-HHHHHTSCTTCCEEECTTSCGG-----GSCHHHHHHHHHTSCTTCCEEECTTSC--GGGSCHHHH
T ss_pred             ccCCcCCHHHHHHH-HHHHhcCCccccEeeecCCCCc-----hhhHHHHHHHHHhCCCCCCEEECCCCC--CChhHHHHH
Confidence            88877653221000 01122333 7888888875322     11111    22334 488888888883  443     3


Q ss_pred             ccCccc-cCccCEEEEcccCCcccccch---hhhhcCCCccEEEeccCc-------ccchhccccCCCCcccccccccee
Q 036454          267 VPSSAS-FRNLTVLKVCNCWQLISLVTP---QTAKTLVQLRELRVSECN-------RLEEIVANDGDADDEIVFSKLKWL  335 (410)
Q Consensus       267 ~~~~~~-~~~L~~L~l~~c~~l~~~~~~---~~~~~l~~L~~L~l~~c~-------~l~~~~~~~~~~~~~~~~~~L~~L  335 (410)
                      +..+.. .++|++|+++++ .+...+..   .....+++|++|++++|.       .+..+......      +++|+.|
T Consensus       217 ~~~l~~~~~~L~~L~Ls~N-~l~~~~~~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~------l~~L~~L  289 (362)
T 3goz_A          217 AYIFSSIPNHVVSLNLCLN-CLHGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPN------IQKIILV  289 (362)
T ss_dssp             HHHHHHSCTTCCEEECCSS-CCCCCCHHHHHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTT------CCEEEEE
T ss_pred             HHHHhcCCCCceEEECcCC-CCCcHHHHHHHHHHhcCCCccEEEeccCCccccCHHHHHHHHHHhcc------CCceEEE
Confidence            333333 357888888776 45554321   223566788888888764       12333344444      7778888


Q ss_pred             ecCcCc
Q 036454          336 FLESSE  341 (410)
Q Consensus       336 ~l~~c~  341 (410)
                      ++++.+
T Consensus       290 dL~~N~  295 (362)
T 3goz_A          290 DKNGKE  295 (362)
T ss_dssp             CTTSCB
T ss_pred             ecCCCc
Confidence            887743

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=99.40  E-value=1.7e-13  Score=128.67  Aligned_cols=251  Identities=13%  Similarity=0.016  Sum_probs=114.9

Q ss_pred             cccccCCcEEEecCccccccccc-cCCccccccC-cccEEEeccCcCccccCchhHHhhh-----hccceEeeccccCcc
Q 036454           15 SGAATQLRELHVFHLPKLTKLWN-KDPQGKLIFR-NLVVVRIFDCQSLKNIFPTSIARSL-----LRLETLSIKDCGSVE   87 (410)
Q Consensus        15 ~~~~~~L~~L~l~~~~~l~~~~~-~~~~~~~~l~-~L~~L~l~~~~~l~~~~~~~~~~~l-----~~L~~L~l~~~~~l~   87 (410)
                      +...++|+.|+++++. ++.... .....+..++ +|++|++++| .+....+..+. .+     ++|++|++++|. +.
T Consensus        18 ~~~~~~L~~L~Ls~n~-l~~~~~~~l~~~l~~~~~~L~~L~Ls~N-~l~~~~~~~l~-~~l~~~~~~L~~L~Ls~n~-l~   93 (362)
T 3goz_A           18 TSIPHGVTSLDLSLNN-LYSISTVELIQAFANTPASVTSLNLSGN-SLGFKNSDELV-QILAAIPANVTSLNLSGNF-LS   93 (362)
T ss_dssp             HTSCTTCCEEECTTSC-GGGSCHHHHHHHHHTCCTTCCEEECCSS-CGGGSCHHHHH-HHHHTSCTTCCEEECCSSC-GG
T ss_pred             HhCCCCceEEEccCCC-CChHHHHHHHHHHHhCCCceeEEECcCC-CCCHHHHHHHH-HHHhccCCCccEEECcCCc-CC
Confidence            3334557777777763 332200 0002334566 6777777777 45544443332 33     667777777665 44


Q ss_pred             eEeccCCCCCCCcccccC-CCccEEeeccCCCccccccCcccCCCCCceEEEEccCCc-cccccEEEeeccCcccccccc
Q 036454           88 EIVANDGRGNDAATKFIF-PSLTFLRLRDLPDLTTFYSGMHILECPELRKLEVNHVDV-FANLEELTLSKCIFTTWRQAQ  165 (410)
Q Consensus        88 ~~~~~~~~~~~~~~~~~l-~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~-l~~L~~L~i~~~~~~~~~~~~  165 (410)
                      ..+....    ...+..+ ++|+.|+++++ .+.......+...+           .. .++|++|++++|.+...... 
T Consensus        94 ~~~~~~l----~~~l~~~~~~L~~L~Ls~N-~l~~~~~~~l~~~l-----------~~~~~~L~~L~Ls~N~l~~~~~~-  156 (362)
T 3goz_A           94 YKSSDEL----VKTLAAIPFTITVLDLGWN-DFSSKSSSEFKQAF-----------SNLPASITSLNLRGNDLGIKSSD-  156 (362)
T ss_dssp             GSCHHHH----HHHHHTSCTTCCEEECCSS-CGGGSCHHHHHHHH-----------TTSCTTCCEEECTTSCGGGSCHH-
T ss_pred             hHHHHHH----HHHHHhCCCCccEEECcCC-cCCcHHHHHHHHHH-----------HhCCCceeEEEccCCcCCHHHHH-
Confidence            3322000    0012233 56777777666 33333221111000           00 02444444444443311110 


Q ss_pred             cccccEEEEEeCCCccchhhhhhhcc-cCceEEEeccccccccccchhhcccccc-CcccEEEeCCcccccccccCCCC-
Q 036454          166 FHKLKILHFISDGSDFFQVGLLQNIH-NLEKLVLSTCEYKKIFSCEEVEEHAEGI-AQIKSLKLKKLWLIEEHLWNPDS-  242 (410)
Q Consensus       166 l~~L~~L~l~~~~~~~~~~~~l~~l~-~L~~L~l~~~~~~~~~~~~~~~~~~~~l-~~L~~L~l~~c~~l~~~~~~~~~-  242 (410)
                                     .+ ...+..++ +|+.|++++|.+........ ......+ ++|++|+++++.-.     ..+. 
T Consensus       157 ---------------~l-~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l-~~~l~~~~~~L~~L~Ls~N~i~-----~~~~~  214 (362)
T 3goz_A          157 ---------------EL-IQILAAIPANVNSLNLRGNNLASKNCAEL-AKFLASIPASVTSLDLSANLLG-----LKSYA  214 (362)
T ss_dssp             ---------------HH-HHHHHTSCTTCCEEECTTSCGGGSCHHHH-HHHHHTSCTTCCEEECTTSCGG-----GSCHH
T ss_pred             ---------------HH-HHHHhcCCccccEeeecCCCCchhhHHHH-HHHHHhCCCCCCEEECCCCCCC-----hhHHH
Confidence                           11 12233443 67777777666544322000 0112223 36777777763221     1111 


Q ss_pred             ---ccccc-cccceEEEEeccccccccc-----ccCccccCccCEEEEcccCCcccccch------hhhhcCCCccEEEe
Q 036454          243 ---KLDSF-LQNLEFLEVKKCALSLISL-----VPSSASFRNLTVLKVCNCWQLISLVTP------QTAKTLVQLRELRV  307 (410)
Q Consensus       243 ---~~~~~-~~~L~~L~l~~~~~~l~~l-----~~~~~~~~~L~~L~l~~c~~l~~~~~~------~~~~~l~~L~~L~l  307 (410)
                         ..+.. .++|++|++++|.  +++.     ......+++|++|++++|. +..+...      .....+++|++|++
T Consensus       215 ~l~~~l~~~~~~L~~L~Ls~N~--l~~~~~~~l~~~~~~l~~L~~L~L~~n~-l~~i~~~~~~~l~~~~~~l~~L~~LdL  291 (362)
T 3goz_A          215 ELAYIFSSIPNHVVSLNLCLNC--LHGPSLENLKLLKDSLKHLQTVYLDYDI-VKNMSKEQCKALGAAFPNIQKIILVDK  291 (362)
T ss_dssp             HHHHHHHHSCTTCCEEECCSSC--CCCCCHHHHHHTTTTTTTCSEEEEEHHH-HTTCCHHHHHHHHTTSTTCCEEEEECT
T ss_pred             HHHHHHhcCCCCceEEECcCCC--CCcHHHHHHHHHHhcCCCccEEEeccCC-ccccCHHHHHHHHHHhccCCceEEEec
Confidence               11222 3577777777773  3332     2223556778888887763 2222110      12245667778888


Q ss_pred             ccCc
Q 036454          308 SECN  311 (410)
Q Consensus       308 ~~c~  311 (410)
                      +++.
T Consensus       292 ~~N~  295 (362)
T 3goz_A          292 NGKE  295 (362)
T ss_dssp             TSCB
T ss_pred             CCCc
Confidence            7753

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=99.40  E-value=2.1e-12  Score=117.31  Aligned_cols=188  Identities=19%  Similarity=0.187  Sum_probs=105.8

Q ss_pred             hhhccceEeeccccCcceEeccCCCCCCCcccccCCCccEEeeccCCCccccccCcccCCCCCceEEEEccCCccccccE
Q 036454           71 SLLRLETLSIKDCGSVEEIVANDGRGNDAATKFIFPSLTFLRLRDLPDLTTFYSGMHILECPELRKLEVNHVDVFANLEE  150 (410)
Q Consensus        71 ~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~l~~L~~  150 (410)
                      .+..+..+.+.+.. +..+.          ....+++|+.|+++++ .+..++.  + ..+              ++|+.
T Consensus        22 ~l~~~~~~~l~~~~-~~~~~----------~~~~l~~L~~L~l~~~-~i~~~~~--~-~~l--------------~~L~~   72 (291)
T 1h6t_A           22 AFAETIKDNLKKKS-VTDAV----------TQNELNSIDQIIANNS-DIKSVQG--I-QYL--------------PNVTK   72 (291)
T ss_dssp             HHHHHHHHHTTCSC-TTSEE----------CHHHHHTCCEEECTTS-CCCCCTT--G-GGC--------------TTCCE
T ss_pred             HHHHHHHHHhcCCC-ccccc----------chhhcCcccEEEccCC-CcccChh--H-hcC--------------CCCCE
Confidence            34445555555443 44433          4456888999999887 4554422  1 122              55666


Q ss_pred             EEeeccCcccccccc-cccccEEEEEeCCCccchhhhhhhcccCceEEEeccccccccccchhhccccccCcccEEEeCC
Q 036454          151 LTLSKCIFTTWRQAQ-FHKLKILHFISDGSDFFQVGLLQNIHNLEKLVLSTCEYKKIFSCEEVEEHAEGIAQIKSLKLKK  229 (410)
Q Consensus       151 L~i~~~~~~~~~~~~-l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~  229 (410)
                      |++++|.+....+.. +++|+.|++..+.+...+  .+..+++|+.|++++|.+..+..       +..+++|+.|++++
T Consensus        73 L~L~~n~l~~~~~l~~l~~L~~L~l~~n~l~~~~--~l~~l~~L~~L~L~~n~i~~~~~-------l~~l~~L~~L~l~~  143 (291)
T 1h6t_A           73 LFLNGNKLTDIKPLANLKNLGWLFLDENKVKDLS--SLKDLKKLKSLSLEHNGISDING-------LVHLPQLESLYLGN  143 (291)
T ss_dssp             EECCSSCCCCCGGGTTCTTCCEEECCSSCCCCGG--GGTTCTTCCEEECTTSCCCCCGG-------GGGCTTCCEEECCS
T ss_pred             EEccCCccCCCcccccCCCCCEEECCCCcCCCCh--hhccCCCCCEEECCCCcCCCChh-------hcCCCCCCEEEccC
Confidence            666666655444322 666777777555555443  25666677777777666555422       44566666666666


Q ss_pred             cccccccccCCCCccccccccceEEEEecccccccccccCccccCccCEEEEcccCCcccccchhhhhcCCCccEEEecc
Q 036454          230 LWLIEEHLWNPDSKLDSFLQNLEFLEVKKCALSLISLVPSSASFRNLTVLKVCNCWQLISLVTPQTAKTLVQLRELRVSE  309 (410)
Q Consensus       230 c~~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~l~~l~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~  309 (410)
                      +     .+.  ....+..+++|++|++++|  .++.+++ +..+++|++|+++++ .+..++   ....+++|+.|++++
T Consensus       144 n-----~l~--~~~~l~~l~~L~~L~L~~N--~l~~~~~-l~~l~~L~~L~L~~N-~i~~l~---~l~~l~~L~~L~l~~  209 (291)
T 1h6t_A          144 N-----KIT--DITVLSRLTKLDTLSLEDN--QISDIVP-LAGLTKLQNLYLSKN-HISDLR---ALAGLKNLDVLELFS  209 (291)
T ss_dssp             S-----CCC--CCGGGGGCTTCSEEECCSS--CCCCCGG-GTTCTTCCEEECCSS-CCCBCG---GGTTCTTCSEEEEEE
T ss_pred             C-----cCC--cchhhccCCCCCEEEccCC--ccccchh-hcCCCccCEEECCCC-cCCCCh---hhccCCCCCEEECcC
Confidence            3     221  1134556666666666666  3444444 555666666666555 354443   245566666666665


Q ss_pred             C
Q 036454          310 C  310 (410)
Q Consensus       310 c  310 (410)
                      +
T Consensus       210 n  210 (291)
T 1h6t_A          210 Q  210 (291)
T ss_dssp             E
T ss_pred             C
Confidence            4

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=99.39  E-value=2.8e-12  Score=113.94  Aligned_cols=172  Identities=17%  Similarity=0.223  Sum_probs=105.2

Q ss_pred             cCCcEEEecCccccccccccCCccccccCcccEEEeccCcCccccCchhHHhhhhccceEeeccccCcceEeccCCCCCC
Q 036454           19 TQLRELHVFHLPKLTKLWNKDPQGKLIFRNLVVVRIFDCQSLKNIFPTSIARSLLRLETLSIKDCGSVEEIVANDGRGND   98 (410)
Q Consensus        19 ~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~   98 (410)
                      .+.+.+++.+. .++.+    |.++  .+++++|+++++ .+..+++..+ .++++|++|+++++. +..++.       
T Consensus        14 ~~~~~l~~~~~-~l~~~----p~~~--~~~l~~L~L~~n-~l~~~~~~~~-~~l~~L~~L~L~~n~-l~~~~~-------   76 (251)
T 3m19_A           14 EGKKEVDCQGK-SLDSV----PSGI--PADTEKLDLQST-GLATLSDATF-RGLTKLTWLNLDYNQ-LQTLSA-------   76 (251)
T ss_dssp             GGGTEEECTTC-CCSSC----CSCC--CTTCCEEECTTS-CCCCCCTTTT-TTCTTCCEEECTTSC-CCCCCT-------
T ss_pred             CCCeEEecCCC-Ccccc----CCCC--CCCCCEEEccCC-CcCccCHhHh-cCcccCCEEECCCCc-CCccCH-------
Confidence            34556666665 33333    4432  257777777777 4444544333 567777777777765 555443       


Q ss_pred             CcccccCCCccEEeeccCCCccccccCcccCCCCCceEEEEccCCccccccEEEeeccCcccccccc---cccccEEEEE
Q 036454           99 AATKFIFPSLTFLRLRDLPDLTTFYSGMHILECPELRKLEVNHVDVFANLEELTLSKCIFTTWRQAQ---FHKLKILHFI  175 (410)
Q Consensus        99 ~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~l~~L~~L~i~~~~~~~~~~~~---l~~L~~L~l~  175 (410)
                       ..+..+++|+.|+++++ .+..++...+. .+              ++|++|++++|.+..+++..   +++|+.|++.
T Consensus        77 -~~~~~l~~L~~L~L~~n-~l~~~~~~~~~-~l--------------~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls  139 (251)
T 3m19_A           77 -GVFDDLTELGTLGLANN-QLASLPLGVFD-HL--------------TQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLN  139 (251)
T ss_dssp             -TTTTTCTTCCEEECTTS-CCCCCCTTTTT-TC--------------TTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred             -hHhccCCcCCEEECCCC-cccccChhHhc-cc--------------CCCCEEEcCCCcCCCcChhHhccCCcccEEECc
Confidence             13456677777777776 44444433221 22              45555555555555544432   6677777776


Q ss_pred             eCCCccchhhhhhhcccCceEEEeccccccccccchhhccccccCcccEEEeCC
Q 036454          176 SDGSDFFQVGLLQNIHNLEKLVLSTCEYKKIFSCEEVEEHAEGIAQIKSLKLKK  229 (410)
Q Consensus       176 ~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~  229 (410)
                      .+.+..++...+..+++|+.|++++|.+..+..     ..+..+++|+.|++++
T Consensus       140 ~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~-----~~~~~l~~L~~L~l~~  188 (251)
T 3m19_A          140 TNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPH-----GAFDRLGKLQTITLFG  188 (251)
T ss_dssp             SSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCT-----TTTTTCTTCCEEECCS
T ss_pred             CCcCCccCHHHcCcCcCCCEEECCCCcCCccCH-----HHHhCCCCCCEEEeeC
Confidence            666666666667788888888888888776643     2355678888888887

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=99.39  E-value=1.2e-12  Score=130.56  Aligned_cols=63  Identities=14%  Similarity=0.194  Sum_probs=41.3

Q ss_pred             ccCcccEEEeccCcCccccCchhHHhhhhccceEeeccccCcceEeccCCCCCCCcccccCCCccEEeeccCCCccccc
Q 036454           45 IFRNLVVVRIFDCQSLKNIFPTSIARSLLRLETLSIKDCGSVEEIVANDGRGNDAATKFIFPSLTFLRLRDLPDLTTFY  123 (410)
Q Consensus        45 ~l~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~  123 (410)
                      .+.++..+.+... .+.++.+.   ..+++|++|+++++. +..++          .+..+++|+.|+|+++ .+..++
T Consensus        19 ~l~~l~~l~l~~~-~i~~~~~~---~~L~~L~~L~l~~n~-i~~l~----------~l~~l~~L~~L~Ls~N-~l~~~~   81 (605)
T 1m9s_A           19 AFAETIKDNLKKK-SVTDAVTQ---NELNSIDQIIANNSD-IKSVQ----------GIQYLPNVTKLFLNGN-KLTDIK   81 (605)
T ss_dssp             HHHHHHHHHTTCS-CTTSEECH---HHHTTCCCCBCTTCC-CCCCT----------TGGGCTTCCEEECTTS-CCCCCG
T ss_pred             HHHHHHHHhccCC-Ccccccch---hcCCCCCEEECcCCC-CCCCh----------HHccCCCCCEEEeeCC-CCCCCh
Confidence            4555666666555 34444343   678888888888876 66553          4667788888888887 444443

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=99.38  E-value=2e-12  Score=128.93  Aligned_cols=170  Identities=17%  Similarity=0.211  Sum_probs=101.3

Q ss_pred             cccccccCCcEEEecCccccccccccCCccccccCcccEEEeccCcCccccCchhHHhhhhccceEeeccccCcceEecc
Q 036454           13 THSGAATQLRELHVFHLPKLTKLWNKDPQGKLIFRNLVVVRIFDCQSLKNIFPTSIARSLLRLETLSIKDCGSVEEIVAN   92 (410)
Q Consensus        13 ~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~   92 (410)
                      .....+++|+.|+++++. +..+     +.+..+++|++|++++| .+..+++.   .++++|++|+++++. +..++  
T Consensus        37 ~~~~~L~~L~~L~l~~n~-i~~l-----~~l~~l~~L~~L~Ls~N-~l~~~~~l---~~l~~L~~L~Ls~N~-l~~l~--  103 (605)
T 1m9s_A           37 VTQNELNSIDQIIANNSD-IKSV-----QGIQYLPNVTKLFLNGN-KLTDIKPL---TNLKNLGWLFLDENK-IKDLS--  103 (605)
T ss_dssp             ECHHHHTTCCCCBCTTCC-CCCC-----TTGGGCTTCCEEECTTS-CCCCCGGG---GGCTTCCEEECCSSC-CCCCT--
T ss_pred             cchhcCCCCCEEECcCCC-CCCC-----hHHccCCCCCEEEeeCC-CCCCChhh---ccCCCCCEEECcCCC-CCCCh--
Confidence            346678888888888774 3332     35678888888888888 55555552   688888888888875 65543  


Q ss_pred             CCCCCCCcccccCCCccEEeeccCCCccccccCcccCCCCCceEEEEccCCccccccEEEeeccCcccccccc-cccccE
Q 036454           93 DGRGNDAATKFIFPSLTFLRLRDLPDLTTFYSGMHILECPELRKLEVNHVDVFANLEELTLSKCIFTTWRQAQ-FHKLKI  171 (410)
Q Consensus        93 ~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~l~~L~~L~i~~~~~~~~~~~~-l~~L~~  171 (410)
                              .+..+++|+.|+++++ .+..++.  + ..+++              |+.|++++|.+..+.... +++|+.
T Consensus       104 --------~l~~l~~L~~L~Ls~N-~l~~l~~--l-~~l~~--------------L~~L~Ls~N~l~~l~~l~~l~~L~~  157 (605)
T 1m9s_A          104 --------SLKDLKKLKSLSLEHN-GISDING--L-VHLPQ--------------LESLYLGNNKITDITVLSRLTKLDT  157 (605)
T ss_dssp             --------TSTTCTTCCEEECTTS-CCCCCGG--G-GGCTT--------------CSEEECCSSCCCCCGGGGSCTTCSE
T ss_pred             --------hhccCCCCCEEEecCC-CCCCCcc--c-cCCCc--------------cCEEECCCCccCCchhhcccCCCCE
Confidence                    5567788888888887 4444321  1 13344              444444444444332222 555666


Q ss_pred             EEEEeCCCccchhhhhhhcccCceEEEeccccccccccchhhccccccCcccEEEeCCc
Q 036454          172 LHFISDGSDFFQVGLLQNIHNLEKLVLSTCEYKKIFSCEEVEEHAEGIAQIKSLKLKKL  230 (410)
Q Consensus       172 L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~c  230 (410)
                      |+++.+.+...+.  +..+++|+.|++++|.+..+..       +..+++|+.|+++++
T Consensus       158 L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~i~~l~~-------l~~l~~L~~L~L~~N  207 (605)
T 1m9s_A          158 LSLEDNQISDIVP--LAGLTKLQNLYLSKNHISDLRA-------LAGLKNLDVLELFSQ  207 (605)
T ss_dssp             EECCSSCCCCCGG--GTTCTTCCEEECCSSCCCBCGG-------GTTCTTCSEEECCSE
T ss_pred             EECcCCcCCCchh--hccCCCCCEEECcCCCCCCChH-------HccCCCCCEEEccCC
Confidence            6654444444332  4556666666666665554422       445566666666653

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=99.36  E-value=3.5e-12  Score=108.91  Aligned_cols=151  Identities=19%  Similarity=0.222  Sum_probs=91.6

Q ss_pred             hhcccCceEEEeccccccccccchhhccccccCcccEEEeCCcccccccccCCCCccccccccceEEEEecccccccc-c
Q 036454          188 QNIHNLEKLVLSTCEYKKIFSCEEVEEHAEGIAQIKSLKLKKLWLIEEHLWNPDSKLDSFLQNLEFLEVKKCALSLIS-L  266 (410)
Q Consensus       188 ~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~l~~-l  266 (410)
                      ..+++|+.|+++++.+..+..       ...+++|++|+++++ .+ ..     ...+..+++|++|++++|.  ++. .
T Consensus        41 ~~l~~L~~L~l~~n~i~~l~~-------l~~l~~L~~L~l~~n-~~-~~-----~~~l~~l~~L~~L~l~~n~--l~~~~  104 (197)
T 4ezg_A           41 AQMNSLTYITLANINVTDLTG-------IEYAHNIKDLTINNI-HA-TN-----YNPISGLSNLERLRIMGKD--VTSDK  104 (197)
T ss_dssp             HHHHTCCEEEEESSCCSCCTT-------GGGCTTCSEEEEESC-CC-SC-----CGGGTTCTTCCEEEEECTT--CBGGG
T ss_pred             hhcCCccEEeccCCCccChHH-------HhcCCCCCEEEccCC-CC-Cc-----chhhhcCCCCCEEEeECCc--cCccc
Confidence            445666666666665554332       445566666666664 22 11     2245567777777777773  332 4


Q ss_pred             ccCccccCccCEEEEcccCCcccccchhhhhcCCCccEEEeccCcccchhccccCCCCccccccccceeecCcCccccee
Q 036454          267 VPSSASFRNLTVLKVCNCWQLISLVTPQTAKTLVQLRELRVSECNRLEEIVANDGDADDEIVFSKLKWLFLESSESITSF  346 (410)
Q Consensus       267 ~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~  346 (410)
                      +..+..+++|++|++++|. +..... .....+++|++|++++|..+++++ .+..      +++|+.|++++|. ++++
T Consensus       105 ~~~l~~l~~L~~L~Ls~n~-i~~~~~-~~l~~l~~L~~L~L~~n~~i~~~~-~l~~------l~~L~~L~l~~n~-i~~~  174 (197)
T 4ezg_A          105 IPNLSGLTSLTLLDISHSA-HDDSIL-TKINTLPKVNSIDLSYNGAITDIM-PLKT------LPELKSLNIQFDG-VHDY  174 (197)
T ss_dssp             SCCCTTCTTCCEEECCSSB-CBGGGH-HHHTTCSSCCEEECCSCTBCCCCG-GGGG------CSSCCEEECTTBC-CCCC
T ss_pred             ChhhcCCCCCCEEEecCCc-cCcHhH-HHHhhCCCCCEEEccCCCCccccH-hhcC------CCCCCEEECCCCC-CcCh
Confidence            5556677777777777663 443211 345677778888887776566554 4455      7788888888753 5555


Q ss_pred             cCCCcccCCCCccEEEEecCC
Q 036454          347 CSGNYAFSFPSLEDLIVENCP  367 (410)
Q Consensus       347 ~~~~~~~~~~~L~~L~l~~c~  367 (410)
                      .   ....+++|++|++.+++
T Consensus       175 ~---~l~~l~~L~~L~l~~N~  192 (197)
T 4ezg_A          175 R---GIEDFPKLNQLYAFSQT  192 (197)
T ss_dssp             T---TGGGCSSCCEEEECBC-
T ss_pred             H---HhccCCCCCEEEeeCcc
Confidence            4   23457888888887653

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=99.35  E-value=1.1e-11  Score=105.87  Aligned_cols=148  Identities=15%  Similarity=0.222  Sum_probs=76.2

Q ss_pred             ccCcccEEEeCCcccccccccCCCCccccccccceEEEEecccccccccccCccccCccCEEEEcccCCcccccchhhhh
Q 036454          218 GIAQIKSLKLKKLWLIEEHLWNPDSKLDSFLQNLEFLEVKKCALSLISLVPSSASFRNLTVLKVCNCWQLISLVTPQTAK  297 (410)
Q Consensus       218 ~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~l~~l~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~  297 (410)
                      .+++|++|+++++     .+..  ...+..+++|++|++++|  .+..++ .+..+++|++|+++++ .+..... ..+.
T Consensus        42 ~l~~L~~L~l~~n-----~i~~--l~~l~~l~~L~~L~l~~n--~~~~~~-~l~~l~~L~~L~l~~n-~l~~~~~-~~l~  109 (197)
T 4ezg_A           42 QMNSLTYITLANI-----NVTD--LTGIEYAHNIKDLTINNI--HATNYN-PISGLSNLERLRIMGK-DVTSDKI-PNLS  109 (197)
T ss_dssp             HHHTCCEEEEESS-----CCSC--CTTGGGCTTCSEEEEESC--CCSCCG-GGTTCTTCCEEEEECT-TCBGGGS-CCCT
T ss_pred             hcCCccEEeccCC-----CccC--hHHHhcCCCCCEEEccCC--CCCcch-hhhcCCCCCEEEeECC-ccCcccC-hhhc
Confidence            3456666666652     2211  113555666666666666  333332 3445666666666554 2333111 2234


Q ss_pred             cCCCccEEEeccCcccchhccccCCCCccccccccceeecCcCcccceecCCCcccCCCCccEEEEecCCCCcccCCCCC
Q 036454          298 TLVQLRELRVSECNRLEEIVANDGDADDEIVFSKLKWLFLESSESITSFCSGNYAFSFPSLEDLIVENCPKLNTFSAGVL  377 (410)
Q Consensus       298 ~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~  377 (410)
                      .+++|++|++++|.-....+..++.      +++|+.|++++|..+++++   ....+++|++|++++| .+..++ .+.
T Consensus       110 ~l~~L~~L~Ls~n~i~~~~~~~l~~------l~~L~~L~L~~n~~i~~~~---~l~~l~~L~~L~l~~n-~i~~~~-~l~  178 (197)
T 4ezg_A          110 GLTSLTLLDISHSAHDDSILTKINT------LPKVNSIDLSYNGAITDIM---PLKTLPELKSLNIQFD-GVHDYR-GIE  178 (197)
T ss_dssp             TCTTCCEEECCSSBCBGGGHHHHTT------CSSCCEEECCSCTBCCCCG---GGGGCSSCCEEECTTB-CCCCCT-TGG
T ss_pred             CCCCCCEEEecCCccCcHhHHHHhh------CCCCCEEEccCCCCccccH---hhcCCCCCCEEECCCC-CCcChH-Hhc
Confidence            5566666666665333333444444      6666666666655455543   1234666666666655 344444 344


Q ss_pred             CCCCcceeEec
Q 036454          378 KTPRLQAVQNW  388 (410)
Q Consensus       378 ~~~~L~~l~~~  388 (410)
                      .+++|++|+++
T Consensus       179 ~l~~L~~L~l~  189 (197)
T 4ezg_A          179 DFPKLNQLYAF  189 (197)
T ss_dssp             GCSSCCEEEEC
T ss_pred             cCCCCCEEEee
Confidence            56666666665

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=99.23  E-value=1.1e-11  Score=110.86  Aligned_cols=143  Identities=13%  Similarity=0.085  Sum_probs=71.0

Q ss_pred             cccCcccEEEeccCcCccccCchhHHhhhhccceEeeccccCcceEeccCCCCCCCcccccCCCccEEeeccCCCccccc
Q 036454           44 LIFRNLVVVRIFDCQSLKNIFPTSIARSLLRLETLSIKDCGSVEEIVANDGRGNDAATKFIFPSLTFLRLRDLPDLTTFY  123 (410)
Q Consensus        44 ~~l~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~  123 (410)
                      ..+++|++|++++| .+..++..   ..+++|++|+++++. +..++          .+..+++|+.|+++++ .++.++
T Consensus        38 ~~l~~L~~L~l~~n-~i~~l~~l---~~l~~L~~L~L~~N~-i~~~~----------~l~~l~~L~~L~L~~N-~l~~l~  101 (263)
T 1xeu_A           38 KELSGVQNFNGDNS-NIQSLAGM---QFFTNLKELHLSHNQ-ISDLS----------PLKDLTKLEELSVNRN-RLKNLN  101 (263)
T ss_dssp             HHHTTCSEEECTTS-CCCCCTTG---GGCTTCCEEECCSSC-CCCCG----------GGTTCSSCCEEECCSS-CCSCCT
T ss_pred             hhcCcCcEEECcCC-CcccchHH---hhCCCCCEEECCCCc-cCCCh----------hhccCCCCCEEECCCC-ccCCcC
Confidence            35555556665555 34444321   455556666655553 44333          2344555555555555 333332


Q ss_pred             cCcccCCCCCceEEEEccCCccccccEEEeeccCcccccccc-cccccEEEEEeCCCccchhhhhhhcccCceEEEeccc
Q 036454          124 SGMHILECPELRKLEVNHVDVFANLEELTLSKCIFTTWRQAQ-FHKLKILHFISDGSDFFQVGLLQNIHNLEKLVLSTCE  202 (410)
Q Consensus       124 ~~~~~~~~~~L~~L~l~~~~~l~~L~~L~i~~~~~~~~~~~~-l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~  202 (410)
                      ...   . ++              |+.|++++|.+....... +++|+.|+++.+.+...+  .+..+++|+.|++++|.
T Consensus       102 ~~~---~-~~--------------L~~L~L~~N~l~~~~~l~~l~~L~~L~Ls~N~i~~~~--~l~~l~~L~~L~L~~N~  161 (263)
T 1xeu_A          102 GIP---S-AC--------------LSRLFLDNNELRDTDSLIHLKNLEILSIRNNKLKSIV--MLGFLSKLEVLDLHGNE  161 (263)
T ss_dssp             TCC---C-SS--------------CCEEECCSSCCSBSGGGTTCTTCCEEECTTSCCCBCG--GGGGCTTCCEEECTTSC
T ss_pred             ccc---c-Cc--------------ccEEEccCCccCCChhhcCcccccEEECCCCcCCCCh--HHccCCCCCEEECCCCc
Confidence            211   0 22              333333333333322211 455555555444444443  35667777777777776


Q ss_pred             cccccccchhhccccccCcccEEEeCC
Q 036454          203 YKKIFSCEEVEEHAEGIAQIKSLKLKK  229 (410)
Q Consensus       203 ~~~~~~~~~~~~~~~~l~~L~~L~l~~  229 (410)
                      +..+.       .+..+++|+.|++++
T Consensus       162 i~~~~-------~l~~l~~L~~L~l~~  181 (263)
T 1xeu_A          162 ITNTG-------GLTRLKKVNWIDLTG  181 (263)
T ss_dssp             CCBCT-------TSTTCCCCCEEEEEE
T ss_pred             CcchH-------HhccCCCCCEEeCCC
Confidence            66552       255667777777776

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=99.20  E-value=3.2e-11  Score=107.78  Aligned_cols=57  Identities=14%  Similarity=0.192  Sum_probs=30.8

Q ss_pred             ccCcccEEEeccCcCccccCchhHHhhhhccceEeeccccCcceEeccCCCCCCCcccccCCCccEEeeccC
Q 036454           45 IFRNLVVVRIFDCQSLKNIFPTSIARSLLRLETLSIKDCGSVEEIVANDGRGNDAATKFIFPSLTFLRLRDL  116 (410)
Q Consensus        45 ~l~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~  116 (410)
                      .+.++..+++.++ .+.+++..   ..+++|++|+++++. +..++          .+..+++|+.|+++++
T Consensus        17 ~l~~l~~l~l~~~-~i~~~~~~---~~l~~L~~L~l~~n~-i~~l~----------~l~~l~~L~~L~L~~N   73 (263)
T 1xeu_A           17 GLANAVKQNLGKQ-SVTDLVSQ---KELSGVQNFNGDNSN-IQSLA----------GMQFFTNLKELHLSHN   73 (263)
T ss_dssp             HHHHHHHHHHTCS-CTTSEECH---HHHTTCSEEECTTSC-CCCCT----------TGGGCTTCCEEECCSS
T ss_pred             HHHHHHHHHhcCC-Ccccccch---hhcCcCcEEECcCCC-cccch----------HHhhCCCCCEEECCCC
Confidence            4555555555555 34444322   466666666666654 44433          3445566666666655

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=99.18  E-value=1.9e-10  Score=113.61  Aligned_cols=122  Identities=13%  Similarity=0.074  Sum_probs=69.6

Q ss_pred             cccEEEEEeCCCccchhhhhhhcccCceEEEeccccccccccchhhccccccCcccEEEeCCcccccccccCCCCccccc
Q 036454          168 KLKILHFISDGSDFFQVGLLQNIHNLEKLVLSTCEYKKIFSCEEVEEHAEGIAQIKSLKLKKLWLIEEHLWNPDSKLDSF  247 (410)
Q Consensus       168 ~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~  247 (410)
                      +|+.|+++.+.+..+|.    .+++|+.|++++|.+..+..         .+++|+.|+++++. + ..+    +. +. 
T Consensus       121 ~L~~L~Ls~N~l~~lp~----~l~~L~~L~Ls~N~l~~lp~---------~l~~L~~L~Ls~N~-L-~~l----p~-l~-  179 (571)
T 3cvr_A          121 SLKHLDVDNNQLTMLPE----LPALLEYINADNNQLTMLPE---------LPTSLEVLSVRNNQ-L-TFL----PE-LP-  179 (571)
T ss_dssp             TCCEEECCSSCCSCCCC----CCTTCCEEECCSSCCSCCCC---------CCTTCCEEECCSSC-C-SCC----CC-CC-
T ss_pred             CCCEEECCCCcCCCCCC----cCccccEEeCCCCccCcCCC---------cCCCcCEEECCCCC-C-CCc----ch-hh-
Confidence            55555554444444443    45677777777776655321         45677777777732 2 112    11 22 


Q ss_pred             cccceEEEEecccccccccccCccccCcc-------CEEEEcccCCcccccchhhhhcCCCccEEEeccCcccchhccc
Q 036454          248 LQNLEFLEVKKCALSLISLVPSSASFRNL-------TVLKVCNCWQLISLVTPQTAKTLVQLRELRVSECNRLEEIVAN  319 (410)
Q Consensus       248 ~~~L~~L~l~~~~~~l~~l~~~~~~~~~L-------~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~  319 (410)
                       ++|+.|++++|  .++.+|. +..  +|       ++|+++++ .++.++.  .+..+++|+.|+++++.-...++..
T Consensus       180 -~~L~~L~Ls~N--~L~~lp~-~~~--~L~~~~~~L~~L~Ls~N-~l~~lp~--~l~~l~~L~~L~L~~N~l~~~~p~~  249 (571)
T 3cvr_A          180 -ESLEALDVSTN--LLESLPA-VPV--RNHHSEETEIFFRCREN-RITHIPE--NILSLDPTCTIILEDNPLSSRIRES  249 (571)
T ss_dssp             -TTCCEEECCSS--CCSSCCC-CC----------CCEEEECCSS-CCCCCCG--GGGGSCTTEEEECCSSSCCHHHHHH
T ss_pred             -CCCCEEECcCC--CCCchhh-HHH--hhhcccccceEEecCCC-cceecCH--HHhcCCCCCEEEeeCCcCCCcCHHH
Confidence             67777777777  4556655 222  56       77777665 4666653  3445777888888776544444443

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=99.18  E-value=1.4e-10  Score=101.30  Aligned_cols=112  Identities=21%  Similarity=0.159  Sum_probs=64.2

Q ss_pred             hhhhhcccCceEEEeccccccccccchhhccccccCcccEEEeCCcccccccccCCCCccccccccceEEEEeccccccc
Q 036454          185 GLLQNIHNLEKLVLSTCEYKKIFSCEEVEEHAEGIAQIKSLKLKKLWLIEEHLWNPDSKLDSFLQNLEFLEVKKCALSLI  264 (410)
Q Consensus       185 ~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~l~  264 (410)
                      ..+.++++|+.|++++|.+..+..     ..+..+++|+.|++++     +.+.......+..+++|++|++++|  .++
T Consensus        58 ~~~~~l~~L~~L~L~~N~l~~i~~-----~~~~~l~~L~~L~Ls~-----N~l~~l~~~~~~~l~~L~~L~Ls~N--~l~  125 (229)
T 3e6j_A           58 GVFDSLINLKELYLGSNQLGALPV-----GVFDSLTQLTVLDLGT-----NQLTVLPSAVFDRLVHLKELFMCCN--KLT  125 (229)
T ss_dssp             TTTTTCTTCCEEECCSSCCCCCCT-----TTTTTCTTCCEEECCS-----SCCCCCCTTTTTTCTTCCEEECCSS--CCC
T ss_pred             HHhhCccCCcEEECCCCCCCCcCh-----hhcccCCCcCEEECCC-----CcCCccChhHhCcchhhCeEeccCC--ccc
Confidence            345566677777777666655432     1234566666666666     2222222233456667777777776  455


Q ss_pred             ccccCccccCccCEEEEcccCCcccccchhhhhcCCCccEEEeccC
Q 036454          265 SLVPSSASFRNLTVLKVCNCWQLISLVTPQTAKTLVQLRELRVSEC  310 (410)
Q Consensus       265 ~l~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c  310 (410)
                      .++..+..+++|++|+++++ .+..++. .....+++|+.|++.++
T Consensus       126 ~lp~~~~~l~~L~~L~L~~N-~l~~~~~-~~~~~l~~L~~L~l~~N  169 (229)
T 3e6j_A          126 ELPRGIERLTHLTHLALDQN-QLKSIPH-GAFDRLSSLTHAYLFGN  169 (229)
T ss_dssp             SCCTTGGGCTTCSEEECCSS-CCCCCCT-TTTTTCTTCCEEECTTS
T ss_pred             ccCcccccCCCCCEEECCCC-cCCccCH-HHHhCCCCCCEEEeeCC
Confidence            66666666677777777655 4555543 23455666677766653

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=99.18  E-value=1.1e-10  Score=100.46  Aligned_cols=129  Identities=16%  Similarity=0.183  Sum_probs=54.2

Q ss_pred             cccEEEEEeCCCccchhhhhhhcccCceEEEeccccccccccchhhccccccCcccEEEeCCcccccccccCCCCccccc
Q 036454          168 KLKILHFISDGSDFFQVGLLQNIHNLEKLVLSTCEYKKIFSCEEVEEHAEGIAQIKSLKLKKLWLIEEHLWNPDSKLDSF  247 (410)
Q Consensus       168 ~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~  247 (410)
                      +|+.|++....+...+...+..+++|+.|+++++.+..+..     ..+..+++|++|+++++     .+.......+..
T Consensus        29 ~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~-----~~~~~l~~L~~L~Ls~n-----~l~~~~~~~~~~   98 (208)
T 2o6s_A           29 QTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPN-----GVFNKLTSLTYLNLSTN-----QLQSLPNGVFDK   98 (208)
T ss_dssp             TCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCT-----TTTTTCTTCCEEECCSS-----CCCCCCTTTTTT
T ss_pred             CCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccCh-----hhcCCCCCcCEEECCCC-----cCCccCHhHhcC
Confidence            33334333333333333334555555566555555444322     11234455555555542     221111122344


Q ss_pred             cccceEEEEecccccccccccC-ccccCccCEEEEcccCCcccccchhhhhcCCCccEEEeccC
Q 036454          248 LQNLEFLEVKKCALSLISLVPS-SASFRNLTVLKVCNCWQLISLVTPQTAKTLVQLRELRVSEC  310 (410)
Q Consensus       248 ~~~L~~L~l~~~~~~l~~l~~~-~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c  310 (410)
                      +++|++|++++|  .++.+++. +..+++|++|+++++ .+..++. .....+++|++|+++++
T Consensus        99 l~~L~~L~L~~N--~l~~~~~~~~~~l~~L~~L~l~~N-~l~~~~~-~~~~~l~~L~~L~l~~N  158 (208)
T 2o6s_A           99 LTQLKELALNTN--QLQSLPDGVFDKLTQLKDLRLYQN-QLKSVPD-GVFDRLTSLQYIWLHDN  158 (208)
T ss_dssp             CTTCCEEECCSS--CCCCCCTTTTTTCTTCCEEECCSS-CCSCCCT-TTTTTCTTCCEEECCSC
T ss_pred             ccCCCEEEcCCC--cCcccCHhHhccCCcCCEEECCCC-ccceeCH-HHhccCCCccEEEecCC
Confidence            455555555555  33333322 234455555555443 2333321 12234444555555443

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=99.16  E-value=4.8e-11  Score=102.64  Aligned_cols=134  Identities=17%  Similarity=0.125  Sum_probs=84.0

Q ss_pred             cccEEEEEeCCCccchhhhhhhcccCceEEEeccccccccccchhhccccccCcccEEEeCCcccccccccCCCCccccc
Q 036454          168 KLKILHFISDGSDFFQVGLLQNIHNLEKLVLSTCEYKKIFSCEEVEEHAEGIAQIKSLKLKKLWLIEEHLWNPDSKLDSF  247 (410)
Q Consensus       168 ~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~  247 (410)
                      +|++|++....+..++...+..+++|+.|++++|.+..+..     ..+..+++|++|++++     +.+.......+..
T Consensus        53 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-----~~~~~l~~L~~L~L~~-----N~l~~~~~~~~~~  122 (208)
T 2o6s_A           53 SLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLPN-----GVFDKLTQLKELALNT-----NQLQSLPDGVFDK  122 (208)
T ss_dssp             TCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCT-----TTTTTCTTCCEEECCS-----SCCCCCCTTTTTT
T ss_pred             cCcEEECCCCccCccChhhcCCCCCcCEEECCCCcCCccCH-----hHhcCccCCCEEEcCC-----CcCcccCHhHhcc
Confidence            33333333333334444445677888888888887765543     1245678888888887     3332222334567


Q ss_pred             cccceEEEEecccccccccccC-ccccCccCEEEEcccCCcccccchhhhhcCCCccEEEeccCcccchhccccCC
Q 036454          248 LQNLEFLEVKKCALSLISLVPS-SASFRNLTVLKVCNCWQLISLVTPQTAKTLVQLRELRVSECNRLEEIVANDGD  322 (410)
Q Consensus       248 ~~~L~~L~l~~~~~~l~~l~~~-~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~  322 (410)
                      +++|++|++++|  .++.++.. +..+++|++|++++++ +        ...+++|+.|+++.+.....++..++.
T Consensus       123 l~~L~~L~l~~N--~l~~~~~~~~~~l~~L~~L~l~~N~-~--------~~~~~~l~~L~~~~n~~~g~ip~~~~~  187 (208)
T 2o6s_A          123 LTQLKDLRLYQN--QLKSVPDGVFDRLTSLQYIWLHDNP-W--------DCTCPGIRYLSEWINKHSGVVRNSAGS  187 (208)
T ss_dssp             CTTCCEEECCSS--CCSCCCTTTTTTCTTCCEEECCSCC-B--------CCCTTTTHHHHHHHHHCTTTBBCTTSS
T ss_pred             CCcCCEEECCCC--ccceeCHHHhccCCCccEEEecCCC-e--------ecCCCCHHHHHHHHHhCCceeeccCcc
Confidence            888899999888  46565553 5678889999998763 1        145667888877775544566655444

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=99.15  E-value=2.4e-10  Score=112.77  Aligned_cols=182  Identities=18%  Similarity=0.124  Sum_probs=112.8

Q ss_pred             CCcEEEecCccccccccccCCccccccCcccEEEeccCcCccccCchhHHhhhhccceEeeccccCcceEeccCCCCCCC
Q 036454           20 QLRELHVFHLPKLTKLWNKDPQGKLIFRNLVVVRIFDCQSLKNIFPTSIARSLLRLETLSIKDCGSVEEIVANDGRGNDA   99 (410)
Q Consensus        20 ~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~   99 (410)
                      +|+.|+++++ .++.+    |..+  +++|++|++++| .+..++     +.+++|++|+++++. +..+|.        
T Consensus        60 ~L~~L~Ls~n-~L~~l----p~~l--~~~L~~L~Ls~N-~l~~ip-----~~l~~L~~L~Ls~N~-l~~ip~--------  117 (571)
T 3cvr_A           60 QFSELQLNRL-NLSSL----PDNL--PPQITVLEITQN-ALISLP-----ELPASLEYLDACDNR-LSTLPE--------  117 (571)
T ss_dssp             TCSEEECCSS-CCSCC----CSCC--CTTCSEEECCSS-CCSCCC-----CCCTTCCEEECCSSC-CSCCCC--------
T ss_pred             CccEEEeCCC-CCCcc----CHhH--cCCCCEEECcCC-CCcccc-----cccCCCCEEEccCCC-CCCcch--------
Confidence            7788888776 34433    5443  477888888877 455554     246788888888775 655542        


Q ss_pred             cccccCCCccEEeeccCCCccccccCcccCCCCCceEEEEccCCccccccEEEeeccCcccccccccccccEEEEEeCCC
Q 036454          100 ATKFIFPSLTFLRLRDLPDLTTFYSGMHILECPELRKLEVNHVDVFANLEELTLSKCIFTTWRQAQFHKLKILHFISDGS  179 (410)
Q Consensus       100 ~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~l~~L~~L~i~~~~~~~~~~~~l~~L~~L~l~~~~~  179 (410)
                        +.  .+|+.|+++++ .++.++.     .+              ++|+.|++++|.+..++. .+++|+.|+++.+.+
T Consensus       118 --l~--~~L~~L~Ls~N-~l~~lp~-----~l--------------~~L~~L~Ls~N~l~~lp~-~l~~L~~L~Ls~N~L  172 (571)
T 3cvr_A          118 --LP--ASLKHLDVDNN-QLTMLPE-----LP--------------ALLEYINADNNQLTMLPE-LPTSLEVLSVRNNQL  172 (571)
T ss_dssp             --CC--TTCCEEECCSS-CCSCCCC-----CC--------------TTCCEEECCSSCCSCCCC-CCTTCCEEECCSSCC
T ss_pred             --hh--cCCCEEECCCC-cCCCCCC-----cC--------------ccccEEeCCCCccCcCCC-cCCCcCEEECCCCCC
Confidence              11  27888888876 4444332     12              566666666666665444 467888888866666


Q ss_pred             ccchhhhhhhcccCceEEEeccccccccccchhhccccccCcccEEEeCCcccccccccCCCCccccccccceEEEEecc
Q 036454          180 DFFQVGLLQNIHNLEKLVLSTCEYKKIFSCEEVEEHAEGIAQIKSLKLKKLWLIEEHLWNPDSKLDSFLQNLEFLEVKKC  259 (410)
Q Consensus       180 ~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~L~~L~l~~~  259 (410)
                      ..+|.  +.  ++|+.|++++|.+..+..  .........+.|+.|+++++     .+... +..+..+++|+.|++++|
T Consensus       173 ~~lp~--l~--~~L~~L~Ls~N~L~~lp~--~~~~L~~~~~~L~~L~Ls~N-----~l~~l-p~~l~~l~~L~~L~L~~N  240 (571)
T 3cvr_A          173 TFLPE--LP--ESLEALDVSTNLLESLPA--VPVRNHHSEETEIFFRCREN-----RITHI-PENILSLDPTCTIILEDN  240 (571)
T ss_dssp             SCCCC--CC--TTCCEEECCSSCCSSCCC--CC--------CCEEEECCSS-----CCCCC-CGGGGGSCTTEEEECCSS
T ss_pred             CCcch--hh--CCCCEEECcCCCCCchhh--HHHhhhcccccceEEecCCC-----cceec-CHHHhcCCCCCEEEeeCC
Confidence            66664  33  889999999988775533  11000111123399999883     33211 334555899999999998


Q ss_pred             c
Q 036454          260 A  260 (410)
Q Consensus       260 ~  260 (410)
                      .
T Consensus       241 ~  241 (571)
T 3cvr_A          241 P  241 (571)
T ss_dssp             S
T ss_pred             c
Confidence            5

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.13  E-value=1.3e-12  Score=129.37  Aligned_cols=212  Identities=15%  Similarity=0.102  Sum_probs=120.5

Q ss_pred             ccCcccEEEeccCcCccccCchhHHhhhhccceEeeccccCcceEecc----CCCCCCCcccccCCCccEEe-eccCCCc
Q 036454           45 IFRNLVVVRIFDCQSLKNIFPTSIARSLLRLETLSIKDCGSVEEIVAN----DGRGNDAATKFIFPSLTFLR-LRDLPDL  119 (410)
Q Consensus        45 ~l~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~----~~~~~~~~~~~~l~~L~~L~-l~~~~~l  119 (410)
                      ..++|+.|+++++ .++.+ |..+ +++++|++|+++++..+...+..    ...+.....+..+++|+.|+ ++.. .+
T Consensus       347 ~~~~L~~L~Ls~n-~L~~L-p~~i-~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l~~L~~L~~l~~n-~~  422 (567)
T 1dce_A          347 TDEQLFRCELSVE-KSTVL-QSEL-ESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAA-YL  422 (567)
T ss_dssp             TTTTSSSCCCCHH-HHHHH-HHHH-HHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHH-HH
T ss_pred             cCccceeccCChh-hHHhh-HHHH-HHHHHHHHhccccchhhhhHHHHHHhcccccCCHHHHHHHHhcccCcchhhc-cc
Confidence            5678888888877 45555 3334 67888888887654311111100    00000001333444455444 2221 11


Q ss_pred             cccccCcccCCCCCceEEEEccCCccccccEEEeeccCcccccccccccccEEEEEeCCCccchhhhhhhcccCceEEEe
Q 036454          120 TTFYSGMHILECPELRKLEVNHVDVFANLEELTLSKCIFTTWRQAQFHKLKILHFISDGSDFFQVGLLQNIHNLEKLVLS  199 (410)
Q Consensus       120 ~~~~~~~~~~~~~~L~~L~l~~~~~l~~L~~L~i~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~  199 (410)
                                                ..|+.+.+.+|.+..++   ...|+.|+++.+.+..+|.  +.++++|+.|+++
T Consensus       423 --------------------------~~L~~l~l~~n~i~~l~---~~~L~~L~Ls~n~l~~lp~--~~~l~~L~~L~Ls  471 (567)
T 1dce_A          423 --------------------------DDLRSKFLLENSVLKME---YADVRVLHLAHKDLTVLCH--LEQLLLVTHLDLS  471 (567)
T ss_dssp             --------------------------HHHHHHHHHHHHHHHHH---HTTCSEEECTTSCCSSCCC--GGGGTTCCEEECC
T ss_pred             --------------------------chhhhhhhhcccccccC---ccCceEEEecCCCCCCCcC--ccccccCcEeecC
Confidence                                      22223333333222222   1235555554444445552  6777888888888


Q ss_pred             ccccccccccchhhccccccCcccEEEeCCcccccccccCCCCccccccccceEEEEeccccccccc--ccCccccCccC
Q 036454          200 TCEYKKIFSCEEVEEHAEGIAQIKSLKLKKLWLIEEHLWNPDSKLDSFLQNLEFLEVKKCALSLISL--VPSSASFRNLT  277 (410)
Q Consensus       200 ~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~l~~l--~~~~~~~~~L~  277 (410)
                      +|.+..++.      .+..+++|+.|++++     +.+..  ...+..+++|++|++++|  .++.+  |..++.+++|+
T Consensus       472 ~N~l~~lp~------~~~~l~~L~~L~Ls~-----N~l~~--lp~l~~l~~L~~L~Ls~N--~l~~~~~p~~l~~l~~L~  536 (567)
T 1dce_A          472 HNRLRALPP------ALAALRCLEVLQASD-----NALEN--VDGVANLPRLQELLLCNN--RLQQSAAIQPLVSCPRLV  536 (567)
T ss_dssp             SSCCCCCCG------GGGGCTTCCEEECCS-----SCCCC--CGGGTTCSSCCEEECCSS--CCCSSSTTGGGGGCTTCC
T ss_pred             cccccccch------hhhcCCCCCEEECCC-----CCCCC--CcccCCCCCCcEEECCCC--CCCCCCCcHHHhcCCCCC
Confidence            887776544      466778888888887     33321  125677888888888888  56666  66778888888


Q ss_pred             EEEEcccCCcccccch--hhhhcCCCccEEEe
Q 036454          278 VLKVCNCWQLISLVTP--QTAKTLVQLRELRV  307 (410)
Q Consensus       278 ~L~l~~c~~l~~~~~~--~~~~~l~~L~~L~l  307 (410)
                      .|++++++ +...+..  .....+|+|+.|++
T Consensus       537 ~L~L~~N~-l~~~~~~~~~l~~~lp~L~~L~l  567 (567)
T 1dce_A          537 LLNLQGNS-LCQEEGIQERLAEMLPSVSSILT  567 (567)
T ss_dssp             EEECTTSG-GGGSSSCTTHHHHHCTTCSEEEC
T ss_pred             EEEecCCc-CCCCccHHHHHHHHCcccCccCC
Confidence            88887763 5555431  23456888888753

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=99.12  E-value=3.9e-10  Score=97.83  Aligned_cols=110  Identities=16%  Similarity=0.245  Sum_probs=46.1

Q ss_pred             hhhhcccCceEEEeccccccccccchhhccccccCcccEEEeCCcccccccccCCCCccccccccceEEEEecccccccc
Q 036454          186 LLQNIHNLEKLVLSTCEYKKIFSCEEVEEHAEGIAQIKSLKLKKLWLIEEHLWNPDSKLDSFLQNLEFLEVKKCALSLIS  265 (410)
Q Consensus       186 ~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~l~~  265 (410)
                      .+..+++|+.|++++|.+..+.+     ..+.++++|++|++++     +.+.......+..+++|++|++++|  .++.
T Consensus        51 ~~~~l~~L~~L~Ls~N~i~~~~~-----~~~~~l~~L~~L~Ls~-----N~l~~l~~~~f~~l~~L~~L~L~~N--~l~~  118 (220)
T 2v9t_B           51 AFSPYKKLRRIDLSNNQISELAP-----DAFQGLRSLNSLVLYG-----NKITELPKSLFEGLFSLQLLLLNAN--KINC  118 (220)
T ss_dssp             SSTTCTTCCEEECCSSCCCEECT-----TTTTTCSSCCEEECCS-----SCCCCCCTTTTTTCTTCCEEECCSS--CCCC
T ss_pred             HhhCCCCCCEEECCCCcCCCcCH-----HHhhCCcCCCEEECCC-----CcCCccCHhHccCCCCCCEEECCCC--CCCE
Confidence            34445555555555555444322     1234445555555554     2221111222344455555555555  2333


Q ss_pred             cc-cCccccCccCEEEEcccCCcccccchhhhhcCCCccEEEecc
Q 036454          266 LV-PSSASFRNLTVLKVCNCWQLISLVTPQTAKTLVQLRELRVSE  309 (410)
Q Consensus       266 l~-~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~  309 (410)
                      ++ ..+..+++|++|+++++ .++.++. .....+++|++|++.+
T Consensus       119 ~~~~~~~~l~~L~~L~L~~N-~l~~~~~-~~~~~l~~L~~L~L~~  161 (220)
T 2v9t_B          119 LRVDAFQDLHNLNLLSLYDN-KLQTIAK-GTFSPLRAIQTMHLAQ  161 (220)
T ss_dssp             CCTTTTTTCTTCCEEECCSS-CCSCCCT-TTTTTCTTCCEEECCS
T ss_pred             eCHHHcCCCCCCCEEECCCC-cCCEECH-HHHhCCCCCCEEEeCC
Confidence            22 22334445555555443 2333321 1223344455555444

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=99.12  E-value=3e-10  Score=106.43  Aligned_cols=134  Identities=19%  Similarity=0.207  Sum_probs=62.9

Q ss_pred             CcccEEEeccCcCccccCchhHHhhhhccceEeeccccCcceEeccCCCCCCCcccccCCCccEEeeccCCCccccccCc
Q 036454           47 RNLVVVRIFDCQSLKNIFPTSIARSLLRLETLSIKDCGSVEEIVANDGRGNDAATKFIFPSLTFLRLRDLPDLTTFYSGM  126 (410)
Q Consensus        47 ~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~  126 (410)
                      +.+++|+++++ .+..+++..+..++++|++|+++++. +..++.        ..+..+++|+.|+++++ .+..++...
T Consensus        39 ~~l~~L~Ls~N-~l~~l~~~~~~~~l~~L~~L~L~~N~-i~~i~~--------~~~~~l~~L~~L~Ls~N-~l~~~~~~~  107 (361)
T 2xot_A           39 SYTALLDLSHN-NLSRLRAEWTPTRLTNLHSLLLSHNH-LNFISS--------EAFVPVPNLRYLDLSSN-HLHTLDEFL  107 (361)
T ss_dssp             TTCSEEECCSS-CCCEECTTSSSSCCTTCCEEECCSSC-CCEECT--------TTTTTCTTCCEEECCSS-CCCEECTTT
T ss_pred             CCCCEEECCCC-CCCccChhhhhhcccccCEEECCCCc-CCccCh--------hhccCCCCCCEEECCCC-cCCcCCHHH
Confidence            34666666666 44444443221156666666666654 555543        13445566666666665 344444332


Q ss_pred             ccCCCCCceEEEEccCCccccccEEEeeccCcccccccc---cccccEEEEEeCCCccchhhhh---hhcccCceEEEec
Q 036454          127 HILECPELRKLEVNHVDVFANLEELTLSKCIFTTWRQAQ---FHKLKILHFISDGSDFFQVGLL---QNIHNLEKLVLST  200 (410)
Q Consensus       127 ~~~~~~~L~~L~l~~~~~l~~L~~L~i~~~~~~~~~~~~---l~~L~~L~l~~~~~~~~~~~~l---~~l~~L~~L~l~~  200 (410)
                      +. .+++|              +.|++++|.+..+.+..   +++|+.|++..+.+..++...+   ..+++|+.|++++
T Consensus       108 ~~-~l~~L--------------~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~  172 (361)
T 2xot_A          108 FS-DLQAL--------------EVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSS  172 (361)
T ss_dssp             TT-TCTTC--------------CEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCS
T ss_pred             hC-CCcCC--------------CEEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCC
Confidence            22 23333              33333333333332221   4445555554444444443333   3455566666665


Q ss_pred             cccccc
Q 036454          201 CEYKKI  206 (410)
Q Consensus       201 ~~~~~~  206 (410)
                      |.+..+
T Consensus       173 N~l~~l  178 (361)
T 2xot_A          173 NKLKKL  178 (361)
T ss_dssp             SCCCCC
T ss_pred             CCCCcc
Confidence            555443

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.11  E-value=4.7e-13  Score=132.66  Aligned_cols=127  Identities=17%  Similarity=0.136  Sum_probs=95.1

Q ss_pred             ccCceEEEeccccccccccchhhccccccCcccEEEeCCcccccccccCCCCccccccccceEEEEecccccccccccCc
Q 036454          191 HNLEKLVLSTCEYKKIFSCEEVEEHAEGIAQIKSLKLKKLWLIEEHLWNPDSKLDSFLQNLEFLEVKKCALSLISLVPSS  270 (410)
Q Consensus       191 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~l~~l~~~~  270 (410)
                      ..|+.|++++|.+..++.       +..+++|+.|+++++     .+. .-+..+..+++|+.|++++|  .++.+| .+
T Consensus       441 ~~L~~L~Ls~n~l~~lp~-------~~~l~~L~~L~Ls~N-----~l~-~lp~~~~~l~~L~~L~Ls~N--~l~~lp-~l  504 (567)
T 1dce_A          441 ADVRVLHLAHKDLTVLCH-------LEQLLLVTHLDLSHN-----RLR-ALPPALAALRCLEVLQASDN--ALENVD-GV  504 (567)
T ss_dssp             TTCSEEECTTSCCSSCCC-------GGGGTTCCEEECCSS-----CCC-CCCGGGGGCTTCCEEECCSS--CCCCCG-GG
T ss_pred             cCceEEEecCCCCCCCcC-------ccccccCcEeecCcc-----ccc-ccchhhhcCCCCCEEECCCC--CCCCCc-cc
Confidence            369999999998887643       678899999999983     332 12456889999999999999  677776 68


Q ss_pred             cccCccCEEEEcccCCcccccchhhhhcCCCccEEEeccCcccchhccccCCCCccccccccceeec
Q 036454          271 ASFRNLTVLKVCNCWQLISLVTPQTAKTLVQLRELRVSECNRLEEIVANDGDADDEIVFSKLKWLFL  337 (410)
Q Consensus       271 ~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~L~~L~l  337 (410)
                      +.+++|++|+++++ .+..+.....+..+++|+.|+++++ .++..+.....  ....+|+|+.|++
T Consensus       505 ~~l~~L~~L~Ls~N-~l~~~~~p~~l~~l~~L~~L~L~~N-~l~~~~~~~~~--l~~~lp~L~~L~l  567 (567)
T 1dce_A          505 ANLPRLQELLLCNN-RLQQSAAIQPLVSCPRLVLLNLQGN-SLCQEEGIQER--LAEMLPSVSSILT  567 (567)
T ss_dssp             TTCSSCCEEECCSS-CCCSSSTTGGGGGCTTCCEEECTTS-GGGGSSSCTTH--HHHHCTTCSEEEC
T ss_pred             CCCCCCcEEECCCC-CCCCCCCcHHHhcCCCCCEEEecCC-cCCCCccHHHH--HHHHCcccCccCC
Confidence            88999999999887 5777631246788999999999986 45444432221  1123788888854

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=99.11  E-value=5.4e-10  Score=96.96  Aligned_cols=109  Identities=18%  Similarity=0.243  Sum_probs=49.1

Q ss_pred             hhhcccCceEEEeccccccccccchhhccccccCcccEEEeCCcccccccccCCCCccccccccceEEEEeccccccccc
Q 036454          187 LQNIHNLEKLVLSTCEYKKIFSCEEVEEHAEGIAQIKSLKLKKLWLIEEHLWNPDSKLDSFLQNLEFLEVKKCALSLISL  266 (410)
Q Consensus       187 l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~l~~l  266 (410)
                      +..+++|+.|+++++.+..+..     ..+.++++|++|++++     +.+.......+..+++|++|++++|  .++.+
T Consensus        53 ~~~l~~L~~L~L~~N~i~~i~~-----~~~~~l~~L~~L~Ls~-----N~l~~~~~~~~~~l~~L~~L~Ls~N--~l~~~  120 (220)
T 2v70_A           53 FKKLPQLRKINFSNNKITDIEE-----GAFEGASGVNEILLTS-----NRLENVQHKMFKGLESLKTLMLRSN--RITCV  120 (220)
T ss_dssp             GGGCTTCCEEECCSSCCCEECT-----TTTTTCTTCCEEECCS-----SCCCCCCGGGGTTCSSCCEEECTTS--CCCCB
T ss_pred             hccCCCCCEEECCCCcCCEECH-----HHhCCCCCCCEEECCC-----CccCccCHhHhcCCcCCCEEECCCC--cCCeE
Confidence            4455555555555555444432     1234445555555554     2221112223444555555555555  23333


Q ss_pred             -ccCccccCccCEEEEcccCCcccccchhhhhcCCCccEEEecc
Q 036454          267 -VPSSASFRNLTVLKVCNCWQLISLVTPQTAKTLVQLRELRVSE  309 (410)
Q Consensus       267 -~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~  309 (410)
                       +..+..+++|++|+++++ .++.+.+ ..+..+++|++|++++
T Consensus       121 ~~~~~~~l~~L~~L~L~~N-~l~~~~~-~~~~~l~~L~~L~L~~  162 (220)
T 2v70_A          121 GNDSFIGLSSVRLLSLYDN-QITTVAP-GAFDTLHSLSTLNLLA  162 (220)
T ss_dssp             CTTSSTTCTTCSEEECTTS-CCCCBCT-TTTTTCTTCCEEECCS
T ss_pred             CHhHcCCCccCCEEECCCC-cCCEECH-HHhcCCCCCCEEEecC
Confidence             233344555555555443 2333321 2234445555555544

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=99.06  E-value=1.1e-09  Score=95.06  Aligned_cols=89  Identities=17%  Similarity=0.210  Sum_probs=54.8

Q ss_pred             hhhhhcccCceEEEeccccccccccchhhccccccCcccEEEeCCcccccccccCCCCccccccccceEEEEeccccccc
Q 036454          185 GLLQNIHNLEKLVLSTCEYKKIFSCEEVEEHAEGIAQIKSLKLKKLWLIEEHLWNPDSKLDSFLQNLEFLEVKKCALSLI  264 (410)
Q Consensus       185 ~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~l~  264 (410)
                      ..+.++++|+.|++++|.+..+..     ..+.++++|+.|++++     +.+.......+..+++|++|++++|  .++
T Consensus        74 ~~~~~l~~L~~L~Ls~N~l~~l~~-----~~f~~l~~L~~L~L~~-----N~l~~~~~~~~~~l~~L~~L~L~~N--~l~  141 (220)
T 2v9t_B           74 DAFQGLRSLNSLVLYGNKITELPK-----SLFEGLFSLQLLLLNA-----NKINCLRVDAFQDLHNLNLLSLYDN--KLQ  141 (220)
T ss_dssp             TTTTTCSSCCEEECCSSCCCCCCT-----TTTTTCTTCCEEECCS-----SCCCCCCTTTTTTCTTCCEEECCSS--CCS
T ss_pred             HHhhCCcCCCEEECCCCcCCccCH-----hHccCCCCCCEEECCC-----CCCCEeCHHHcCCCCCCCEEECCCC--cCC
Confidence            345666777777777776665543     1245567777777776     3332223345666777777777777  455


Q ss_pred             cccc-CccccCccCEEEEcccC
Q 036454          265 SLVP-SSASFRNLTVLKVCNCW  285 (410)
Q Consensus       265 ~l~~-~~~~~~~L~~L~l~~c~  285 (410)
                      .+++ .+..+++|++|++++++
T Consensus       142 ~~~~~~~~~l~~L~~L~L~~N~  163 (220)
T 2v9t_B          142 TIAKGTFSPLRAIQTMHLAQNP  163 (220)
T ss_dssp             CCCTTTTTTCTTCCEEECCSSC
T ss_pred             EECHHHHhCCCCCCEEEeCCCC
Confidence            5543 35567777777777653

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=99.06  E-value=9.8e-10  Score=95.28  Aligned_cols=108  Identities=11%  Similarity=0.215  Sum_probs=63.3

Q ss_pred             cccccEEEEEeCCCccchhhhhhhcccCceEEEeccccccccccchhhccccccCcccEEEeCCcccccccccCCCCccc
Q 036454          166 FHKLKILHFISDGSDFFQVGLLQNIHNLEKLVLSTCEYKKIFSCEEVEEHAEGIAQIKSLKLKKLWLIEEHLWNPDSKLD  245 (410)
Q Consensus       166 l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~  245 (410)
                      +++|+.|++..+.+..++...+.++++|+.|++++|.+..+..     ..+.++++|++|++++     +.+.......+
T Consensus        56 l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~-----~~~~~l~~L~~L~Ls~-----N~l~~~~~~~~  125 (220)
T 2v70_A           56 LPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLENVQH-----KMFKGLESLKTLMLRS-----NRITCVGNDSF  125 (220)
T ss_dssp             CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCCCCG-----GGGTTCSSCCEEECTT-----SCCCCBCTTSS
T ss_pred             CCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCCccCccCH-----hHhcCCcCCCEEECCC-----CcCCeECHhHc
Confidence            3334444443333334444455667777777777776655533     2345667777777776     33322223445


Q ss_pred             cccccceEEEEeccccccccc-ccCccccCccCEEEEcccC
Q 036454          246 SFLQNLEFLEVKKCALSLISL-VPSSASFRNLTVLKVCNCW  285 (410)
Q Consensus       246 ~~~~~L~~L~l~~~~~~l~~l-~~~~~~~~~L~~L~l~~c~  285 (410)
                      ..+++|++|++++|  .++.+ +..+..+++|++|++++++
T Consensus       126 ~~l~~L~~L~L~~N--~l~~~~~~~~~~l~~L~~L~L~~N~  164 (220)
T 2v70_A          126 IGLSSVRLLSLYDN--QITTVAPGAFDTLHSLSTLNLLANP  164 (220)
T ss_dssp             TTCTTCSEEECTTS--CCCCBCTTTTTTCTTCCEEECCSCC
T ss_pred             CCCccCCEEECCCC--cCCEECHHHhcCCCCCCEEEecCcC
Confidence            66777888888777  45554 4455667778888877653

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=99.03  E-value=5.9e-10  Score=104.38  Aligned_cols=170  Identities=16%  Similarity=0.148  Sum_probs=116.3

Q ss_pred             ccEEeeccCCCccccccCcccCCCCCceEEEEccCCccccccEEEeeccCccccccc----ccccccEEEEEeCCCccch
Q 036454          108 LTFLRLRDLPDLTTFYSGMHILECPELRKLEVNHVDVFANLEELTLSKCIFTTWRQA----QFHKLKILHFISDGSDFFQ  183 (410)
Q Consensus       108 L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~l~~L~~L~i~~~~~~~~~~~----~l~~L~~L~l~~~~~~~~~  183 (410)
                      -+.+++++. .++.+|...     +             +.++.|++++|.+..+.+.    .+++|+.|++..+.+..++
T Consensus        20 ~~~l~c~~~-~l~~iP~~~-----~-------------~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~   80 (361)
T 2xot_A           20 SNILSCSKQ-QLPNVPQSL-----P-------------SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFIS   80 (361)
T ss_dssp             TTEEECCSS-CCSSCCSSC-----C-------------TTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEEC
T ss_pred             CCEEEeCCC-CcCccCccC-----C-------------CCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccC
Confidence            366666665 555554432     1             3466777777776665543    3678899999777777777


Q ss_pred             hhhhhhcccCceEEEeccccccccccchhhccccccCcccEEEeCCcccccccccCCCCccccccccceEEEEecccccc
Q 036454          184 VGLLQNIHNLEKLVLSTCEYKKIFSCEEVEEHAEGIAQIKSLKLKKLWLIEEHLWNPDSKLDSFLQNLEFLEVKKCALSL  263 (410)
Q Consensus       184 ~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~l  263 (410)
                      ...+.++++|+.|++++|.+..+..     ..+.++++|+.|+++++     .+.......+..+++|+.|++++|  .+
T Consensus        81 ~~~~~~l~~L~~L~Ls~N~l~~~~~-----~~~~~l~~L~~L~L~~N-----~i~~~~~~~~~~l~~L~~L~L~~N--~l  148 (361)
T 2xot_A           81 SEAFVPVPNLRYLDLSSNHLHTLDE-----FLFSDLQALEVLLLYNN-----HIVVVDRNAFEDMAQLQKLYLSQN--QI  148 (361)
T ss_dssp             TTTTTTCTTCCEEECCSSCCCEECT-----TTTTTCTTCCEEECCSS-----CCCEECTTTTTTCTTCCEEECCSS--CC
T ss_pred             hhhccCCCCCCEEECCCCcCCcCCH-----HHhCCCcCCCEEECCCC-----cccEECHHHhCCcccCCEEECCCC--cC
Confidence            7777888999999999888776644     23567889999999883     332222345677889999999988  56


Q ss_pred             cccccCc----cccCccCEEEEcccCCcccccchhhhhcCCC--ccEEEeccC
Q 036454          264 ISLVPSS----ASFRNLTVLKVCNCWQLISLVTPQTAKTLVQ--LRELRVSEC  310 (410)
Q Consensus       264 ~~l~~~~----~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~--L~~L~l~~c  310 (410)
                      +.++...    ..+++|++|+++++ .+..++. ..+..++.  ++.|++.++
T Consensus       149 ~~l~~~~~~~~~~l~~L~~L~L~~N-~l~~l~~-~~~~~l~~~~l~~l~l~~N  199 (361)
T 2xot_A          149 SRFPVELIKDGNKLPKLMLLDLSSN-KLKKLPL-TDLQKLPAWVKNGLYLHNN  199 (361)
T ss_dssp             CSCCGGGTC----CTTCCEEECCSS-CCCCCCH-HHHHHSCHHHHTTEECCSS
T ss_pred             CeeCHHHhcCcccCCcCCEEECCCC-CCCccCH-HHhhhccHhhcceEEecCC
Confidence            6666543    45788999999776 5766653 34456665  477888774

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=99.03  E-value=8e-10  Score=91.45  Aligned_cols=87  Identities=22%  Similarity=0.218  Sum_probs=42.3

Q ss_pred             ccccccceEEEEecccccccc-cccCccccCccCEEEEcccCCcccccchhhhhcCCCccEEEeccCcccchhcc----c
Q 036454          245 DSFLQNLEFLEVKKCALSLIS-LVPSSASFRNLTVLKVCNCWQLISLVTPQTAKTLVQLRELRVSECNRLEEIVA----N  319 (410)
Q Consensus       245 ~~~~~~L~~L~l~~~~~~l~~-l~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~----~  319 (410)
                      +..+++|++|++++|  .+.. ++.....+++|++|+++++ .+..++.......+++|++|++++| .+..++.    .
T Consensus        67 ~~~l~~L~~L~Ls~N--~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~l~~l~~L~~L~l~~N-~l~~~~~~~~~~  142 (168)
T 2ell_A           67 LPKLPKLKKLELSEN--RIFGGLDMLAEKLPNLTHLNLSGN-KLKDISTLEPLKKLECLKSLDLFNC-EVTNLNDYRESV  142 (168)
T ss_dssp             CCCCSSCCEEEEESC--CCCSCCCHHHHHCTTCCEEECBSS-SCCSSGGGGGGSSCSCCCEEECCSS-GGGTSTTHHHHH
T ss_pred             hccCCCCCEEECcCC--cCchHHHHHHhhCCCCCEEeccCC-ccCcchhHHHHhcCCCCCEEEeeCC-cCcchHHHHHHH
Confidence            444555555555555  2333 3333334555666666554 3444432223455566666666554 2333322    3


Q ss_pred             cCCCCccccccccceeecCcCc
Q 036454          320 DGDADDEIVFSKLKWLFLESSE  341 (410)
Q Consensus       320 ~~~~~~~~~~~~L~~L~l~~c~  341 (410)
                      +..      +++|+.|++++|.
T Consensus       143 ~~~------l~~L~~L~l~~n~  158 (168)
T 2ell_A          143 FKL------LPQLTYLDGYDRE  158 (168)
T ss_dssp             HTT------CSSCCEETTEETT
T ss_pred             HHh------CccCcEecCCCCC
Confidence            333      5666666666653

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=99.02  E-value=1.6e-09  Score=94.59  Aligned_cols=60  Identities=12%  Similarity=-0.031  Sum_probs=32.2

Q ss_pred             ccEEEeccCcCccccCchhHHhhhhccceEeeccccCcceEeccCCCCCCCcccccCCCccEEeeccCCCccccc
Q 036454           49 LVVVRIFDCQSLKNIFPTSIARSLLRLETLSIKDCGSVEEIVANDGRGNDAATKFIFPSLTFLRLRDLPDLTTFY  123 (410)
Q Consensus        49 L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~  123 (410)
                      -..++.++. .+..+|..    -.++|++|+++++. +..++.        ..+..+++|+.|+++++ .+..++
T Consensus        21 ~~~v~c~~~-~l~~ip~~----~~~~L~~L~Ls~n~-i~~~~~--------~~~~~l~~L~~L~L~~N-~l~~i~   80 (229)
T 3e6j_A           21 GTTVDCRSK-RHASVPAG----IPTNAQILYLHDNQ-ITKLEP--------GVFDSLINLKELYLGSN-QLGALP   80 (229)
T ss_dssp             TTEEECTTS-CCSSCCSC----CCTTCSEEECCSSC-CCCCCT--------TTTTTCTTCCEEECCSS-CCCCCC
T ss_pred             CCEeEccCC-CcCccCCC----CCCCCCEEEcCCCc-cCccCH--------HHhhCccCCcEEECCCC-CCCCcC
Confidence            345665554 44555432    23667777777665 554432        13455666677766665 344443

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=99.01  E-value=8.1e-10  Score=91.43  Aligned_cols=139  Identities=22%  Similarity=0.200  Sum_probs=94.2

Q ss_pred             cCcccEEEeCCcccccccccCCCCccccccccceEEEEecccccccccccCccccCccCEEEEcccCCcccccchhhhhc
Q 036454          219 IAQIKSLKLKKLWLIEEHLWNPDSKLDSFLQNLEFLEVKKCALSLISLVPSSASFRNLTVLKVCNCWQLISLVTPQTAKT  298 (410)
Q Consensus       219 l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~l~~l~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~  298 (410)
                      .++|++|+++++...+..+    +..+..+++|++|++++|  .++.+ ..+..+++|++|+++++. +....+ .....
T Consensus        23 ~~~L~~L~l~~n~l~~~~i----~~~~~~l~~L~~L~l~~n--~l~~~-~~~~~l~~L~~L~Ls~N~-l~~~~~-~~~~~   93 (168)
T 2ell_A           23 PAAVRELVLDNCKSNDGKI----EGLTAEFVNLEFLSLINV--GLISV-SNLPKLPKLKKLELSENR-IFGGLD-MLAEK   93 (168)
T ss_dssp             TTSCSEEECCSCBCBTTBC----SSCCGGGGGCCEEEEESS--CCCCC-SSCCCCSSCCEEEEESCC-CCSCCC-HHHHH
T ss_pred             cccCCEEECCCCCCChhhH----HHHHHhCCCCCEEeCcCC--CCCCh-hhhccCCCCCEEECcCCc-CchHHH-HHHhh
Confidence            3667777777743110022    233577888999999988  46655 667788999999998874 555221 45567


Q ss_pred             CCCccEEEeccCcccchhc--cccCCCCccccccccceeecCcCcccceecC--CCcccCCCCccEEEEecCCCCcccCC
Q 036454          299 LVQLRELRVSECNRLEEIV--ANDGDADDEIVFSKLKWLFLESSESITSFCS--GNYAFSFPSLEDLIVENCPKLNTFSA  374 (410)
Q Consensus       299 l~~L~~L~l~~c~~l~~~~--~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~--~~~~~~~~~L~~L~l~~c~~l~~~~~  374 (410)
                      +++|++|++++| .++.++  ..+..      +++|+.|++++++ ++.++.  ...+..+++|++|++.+|. +..+|.
T Consensus        94 l~~L~~L~Ls~N-~l~~~~~~~~l~~------l~~L~~L~l~~N~-l~~~~~~~~~~~~~l~~L~~L~l~~n~-~~~~~~  164 (168)
T 2ell_A           94 LPNLTHLNLSGN-KLKDISTLEPLKK------LECLKSLDLFNCE-VTNLNDYRESVFKLLPQLTYLDGYDRE-DQEAPD  164 (168)
T ss_dssp             CTTCCEEECBSS-SCCSSGGGGGGSS------CSCCCEEECCSSG-GGTSTTHHHHHHTTCSSCCEETTEETT-SCBCCS
T ss_pred             CCCCCEEeccCC-ccCcchhHHHHhc------CCCCCEEEeeCCc-CcchHHHHHHHHHhCccCcEecCCCCC-hhhccc
Confidence            899999999986 555554  45566      8999999999864 555543  1134568999999998884 444554


Q ss_pred             C
Q 036454          375 G  375 (410)
Q Consensus       375 ~  375 (410)
                      .
T Consensus       165 ~  165 (168)
T 2ell_A          165 S  165 (168)
T ss_dssp             S
T ss_pred             c
Confidence            3

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=98.99  E-value=6.2e-09  Score=96.07  Aligned_cols=100  Identities=16%  Similarity=0.152  Sum_probs=47.7

Q ss_pred             cCccCEEEEcccCCcccccchhhhhcCCCccEEEeccCcccchhccc-cCCCCccccccccc-eeecCcCcccceecCCC
Q 036454          273 FRNLTVLKVCNCWQLISLVTPQTAKTLVQLRELRVSECNRLEEIVAN-DGDADDEIVFSKLK-WLFLESSESITSFCSGN  350 (410)
Q Consensus       273 ~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~-~~~~~~~~~~~~L~-~L~l~~c~~l~~~~~~~  350 (410)
                      +++|+++++.++ +++.++. .....+++|+++++.+.  ++.+... +.+      +++|+ .+.+.+  .++.+... 
T Consensus       225 ~~~L~~l~L~~n-~i~~I~~-~aF~~~~~L~~l~l~~n--i~~I~~~aF~~------~~~L~~~l~l~~--~l~~I~~~-  291 (329)
T 3sb4_A          225 MPNLVSLDISKT-NATTIPD-FTFAQKKYLLKIKLPHN--LKTIGQRVFSN------CGRLAGTLELPA--SVTAIEFG-  291 (329)
T ss_dssp             CTTCCEEECTTB-CCCEECT-TTTTTCTTCCEEECCTT--CCEECTTTTTT------CTTCCEEEEECT--TCCEECTT-
T ss_pred             cCCCeEEECCCC-CcceecH-hhhhCCCCCCEEECCcc--cceehHHHhhC------ChhccEEEEEcc--cceEEchh-
Confidence            455666666543 2444432 23455556666666542  3333221 222      45555 555554  45555443 


Q ss_pred             cccCCCCccEEEEecCCCCcccCCC-CCCCCCcceeE
Q 036454          351 YAFSFPSLEDLIVENCPKLNTFSAG-VLKTPRLQAVQ  386 (410)
Q Consensus       351 ~~~~~~~L~~L~l~~c~~l~~~~~~-~~~~~~L~~l~  386 (410)
                      .+.+|++|+.+++.. .+++.++.+ +..+++|+.|+
T Consensus       292 aF~~c~~L~~l~l~~-n~i~~I~~~aF~~~~~L~~ly  327 (329)
T 3sb4_A          292 AFMGCDNLRYVLATG-DKITTLGDELFGNGVPSKLIY  327 (329)
T ss_dssp             TTTTCTTEEEEEECS-SCCCEECTTTTCTTCCCCEEE
T ss_pred             hhhCCccCCEEEeCC-CccCccchhhhcCCcchhhhc
Confidence            244556666665533 244444432 23455555554

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=98.95  E-value=7.5e-10  Score=89.67  Aligned_cols=14  Identities=21%  Similarity=0.430  Sum_probs=7.2

Q ss_pred             ccCceEEEeccccc
Q 036454          191 HNLEKLVLSTCEYK  204 (410)
Q Consensus       191 ~~L~~L~l~~~~~~  204 (410)
                      ++|+.|++++|.+.
T Consensus        17 ~~l~~L~l~~n~l~   30 (149)
T 2je0_A           17 SDVKELVLDNSRSN   30 (149)
T ss_dssp             GGCSEEECTTCBCB
T ss_pred             ccCeEEEccCCcCC
Confidence            45555555555443

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=98.93  E-value=4.5e-09  Score=97.05  Aligned_cols=183  Identities=10%  Similarity=0.005  Sum_probs=117.3

Q ss_pred             hhccceEeeccccCcceEeccCCCCCCCcccccCCCccEEeeccCCCccccccCcccCCCCCceEEEEcc----------
Q 036454           72 LLRLETLSIKDCGSVEEIVANDGRGNDAATKFIFPSLTFLRLRDLPDLTTFYSGMHILECPELRKLEVNH----------  141 (410)
Q Consensus        72 l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~----------  141 (410)
                      +++|++|++..  +++.++..        .+..+++|+.++++++ .+..++...+. .+.++..+....          
T Consensus       100 ~~~L~~l~L~~--~i~~I~~~--------aF~~~~~L~~l~l~~n-~i~~i~~~aF~-~~~~l~~l~~~~~~~~~~~~~i  167 (329)
T 3sb4_A          100 KQTLEKVILSE--KIKNIEDA--------AFKGCDNLKICQIRKK-TAPNLLPEALA-DSVTAIFIPLGSSDAYRFKNRW  167 (329)
T ss_dssp             CTTCCC-CBCT--TCCEECTT--------TTTTCTTCCEEEBCCS-SCCEECTTSSC-TTTCEEEECTTCTHHHHTSTTT
T ss_pred             cCCCcEEECCc--cccchhHH--------HhhcCcccceEEcCCC-Cccccchhhhc-CCCceEEecCcchhhhhccccc
Confidence            78888888876  37777652        4556788888888766 34444444433 233444443222          


Q ss_pred             -------C-----------------------CccccccEEEeeccCccccccc---ccccccEEEEEeCCCccchhhhhh
Q 036454          142 -------V-----------------------DVFANLEELTLSKCIFTTWRQA---QFHKLKILHFISDGSDFFQVGLLQ  188 (410)
Q Consensus       142 -------~-----------------------~~l~~L~~L~i~~~~~~~~~~~---~l~~L~~L~l~~~~~~~~~~~~l~  188 (410)
                             |                       ....++..+.+.+.-.......   .+++|+.+++....+..++...+.
T Consensus       168 ~~~~f~~~~~L~~~i~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~l~~~~~~L~~l~L~~n~i~~I~~~aF~  247 (329)
T 3sb4_A          168 EHFAFIEGEPLETTIQVGAMGKLEDEIMKAGLQPRDINFLTIEGKLDNADFKLIRDYMPNLVSLDISKTNATTIPDFTFA  247 (329)
T ss_dssp             TTSCEEESCCCEEEEEECTTCCHHHHHHHTTCCGGGCSEEEEEECCCHHHHHHHHHHCTTCCEEECTTBCCCEECTTTTT
T ss_pred             cccccccccccceeEEecCCCcHHHHHhhcccCccccceEEEeeeecHHHHHHHHHhcCCCeEEECCCCCcceecHhhhh
Confidence                   1                       0112233333333211111110   167899999976678888888899


Q ss_pred             hcccCceEEEeccccccccccchhhccccccCccc-EEEeCCcccccccccCCCCccccccccceEEEEecccccccccc
Q 036454          189 NIHNLEKLVLSTCEYKKIFSCEEVEEHAEGIAQIK-SLKLKKLWLIEEHLWNPDSKLDSFLQNLEFLEVKKCALSLISLV  267 (410)
Q Consensus       189 ~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~L~-~L~l~~c~~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~l~~l~  267 (410)
                      ++++|+.+.+..+ +..+..     ..+.++++|+ .+.+..  ++ ..+   +...+..|++|+++++.++  .++.+.
T Consensus       248 ~~~~L~~l~l~~n-i~~I~~-----~aF~~~~~L~~~l~l~~--~l-~~I---~~~aF~~c~~L~~l~l~~n--~i~~I~  313 (329)
T 3sb4_A          248 QKKYLLKIKLPHN-LKTIGQ-----RVFSNCGRLAGTLELPA--SV-TAI---EFGAFMGCDNLRYVLATGD--KITTLG  313 (329)
T ss_dssp             TCTTCCEEECCTT-CCEECT-----TTTTTCTTCCEEEEECT--TC-CEE---CTTTTTTCTTEEEEEECSS--CCCEEC
T ss_pred             CCCCCCEEECCcc-cceehH-----HHhhCChhccEEEEEcc--cc-eEE---chhhhhCCccCCEEEeCCC--ccCccc
Confidence            9999999999986 555533     3578899999 999987  45 444   2346888999999999887  566666


Q ss_pred             c-CccccCccCEEE
Q 036454          268 P-SSASFRNLTVLK  280 (410)
Q Consensus       268 ~-~~~~~~~L~~L~  280 (410)
                      . .+..+++|+.+.
T Consensus       314 ~~aF~~~~~L~~ly  327 (329)
T 3sb4_A          314 DELFGNGVPSKLIY  327 (329)
T ss_dssp             TTTTCTTCCCCEEE
T ss_pred             hhhhcCCcchhhhc
Confidence            5 345677888765

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=98.89  E-value=1.6e-09  Score=87.71  Aligned_cols=107  Identities=21%  Similarity=0.219  Sum_probs=65.0

Q ss_pred             hhhcccCceEEEeccccccccccchhhccccccCcccEEEeCCcccccccccCCCCccccccccceEEEEeccccccccc
Q 036454          187 LQNIHNLEKLVLSTCEYKKIFSCEEVEEHAEGIAQIKSLKLKKLWLIEEHLWNPDSKLDSFLQNLEFLEVKKCALSLISL  266 (410)
Q Consensus       187 l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~l~~l  266 (410)
                      +..+++|+.|++++|.+..+ .      .+..+++|++|+++++.     +....+.....+++|++|++++|  .++.+
T Consensus        38 ~~~l~~L~~L~l~~n~l~~~-~------~~~~l~~L~~L~Ls~n~-----i~~~~~~~~~~l~~L~~L~ls~N--~i~~~  103 (149)
T 2je0_A           38 TDEFEELEFLSTINVGLTSI-A------NLPKLNKLKKLELSDNR-----VSGGLEVLAEKCPNLTHLNLSGN--KIKDL  103 (149)
T ss_dssp             CTTCTTCCEEECTTSCCCCC-T------TCCCCTTCCEEECCSSC-----CCSCTHHHHHHCTTCCEEECTTS--CCCSH
T ss_pred             HhhcCCCcEEECcCCCCCCc-h------hhhcCCCCCEEECCCCc-----ccchHHHHhhhCCCCCEEECCCC--cCCCh
Confidence            46678888888888876655 2      35667777777777732     21111233445777777777777  44443


Q ss_pred             c--cCccccCccCEEEEcccCCcccccc--hhhhhcCCCccEEEec
Q 036454          267 V--PSSASFRNLTVLKVCNCWQLISLVT--PQTAKTLVQLRELRVS  308 (410)
Q Consensus       267 ~--~~~~~~~~L~~L~l~~c~~l~~~~~--~~~~~~l~~L~~L~l~  308 (410)
                      +  ..+..+++|++|+++++ .+...+.  ......+++|+.|+++
T Consensus       104 ~~~~~~~~l~~L~~L~l~~N-~l~~~~~~~~~~~~~l~~L~~L~l~  148 (149)
T 2je0_A          104 STIEPLKKLENLKSLDLFNC-EVTNLNDYRENVFKLLPQLTYLDGY  148 (149)
T ss_dssp             HHHGGGGGCTTCCEEECTTC-GGGGSTTHHHHHHHHCTTCCEETTB
T ss_pred             HHHHHHhhCCCCCEEeCcCC-cccchHHHHHHHHHHCCCcccccCC
Confidence            3  44566677777777666 3554432  1244666667766654

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=98.85  E-value=1.3e-08  Score=86.11  Aligned_cols=35  Identities=6%  Similarity=0.083  Sum_probs=15.1

Q ss_pred             CcccEEEeccCcCccccCchhHHhhhhccceEeecccc
Q 036454           47 RNLVVVRIFDCQSLKNIFPTSIARSLLRLETLSIKDCG   84 (410)
Q Consensus        47 ~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~   84 (410)
                      ++|++|+++++ .+..++ .. +.++++|++|+++++.
T Consensus        31 ~~l~~L~L~~n-~i~~ip-~~-~~~l~~L~~L~Ls~N~   65 (193)
T 2wfh_A           31 RDVTELYLDGN-QFTLVP-KE-LSNYKHLTLIDLSNNR   65 (193)
T ss_dssp             TTCCEEECCSS-CCCSCC-GG-GGGCTTCCEEECCSSC
T ss_pred             CCCCEEECCCC-cCchhH-HH-hhcccCCCEEECCCCc
Confidence            34555555444 333332 11 2344555555555443

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=98.84  E-value=4.4e-09  Score=87.74  Aligned_cols=14  Identities=14%  Similarity=-0.019  Sum_probs=6.3

Q ss_pred             ccCceEEEeccccc
Q 036454          191 HNLEKLVLSTCEYK  204 (410)
Q Consensus       191 ~~L~~L~l~~~~~~  204 (410)
                      ++|+.|++++|.+.
T Consensus        19 ~~L~~L~l~~n~l~   32 (176)
T 1a9n_A           19 VRDRELDLRGYKIP   32 (176)
T ss_dssp             TSCEEEECTTSCCC
T ss_pred             CCceEEEeeCCCCc
Confidence            44444444444433

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=98.81  E-value=1.8e-08  Score=85.29  Aligned_cols=121  Identities=13%  Similarity=0.088  Sum_probs=62.8

Q ss_pred             EEeeccCcccccccccccccEEEEEeCCCccchhhhhhhcccCceEEEeccccccccccchhhccccccCcccEEEeCCc
Q 036454          151 LTLSKCIFTTWRQAQFHKLKILHFISDGSDFFQVGLLQNIHNLEKLVLSTCEYKKIFSCEEVEEHAEGIAQIKSLKLKKL  230 (410)
Q Consensus       151 L~i~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~c  230 (410)
                      ++.+++.+..++....++|+.|++....+..++ ..+.++++|+.|+++++.+..+..     ..+.++++|++|++++ 
T Consensus        15 l~~~~~~l~~ip~~~~~~l~~L~L~~n~i~~ip-~~~~~l~~L~~L~Ls~N~i~~i~~-----~~f~~l~~L~~L~Ls~-   87 (193)
T 2wfh_A           15 VRCSNKGLKVLPKGIPRDVTELYLDGNQFTLVP-KELSNYKHLTLIDLSNNRISTLSN-----QSFSNMTQLLTLILSY-   87 (193)
T ss_dssp             EECTTSCCSSCCSCCCTTCCEEECCSSCCCSCC-GGGGGCTTCCEEECCSSCCCCCCT-----TTTTTCTTCCEEECCS-
T ss_pred             EEcCCCCCCcCCCCCCCCCCEEECCCCcCchhH-HHhhcccCCCEEECCCCcCCEeCH-----hHccCCCCCCEEECCC-
Confidence            333444333333222334444444333444444 345667777777777776655533     1345566666666666 


Q ss_pred             ccccccccCCCCccccccccceEEEEecccccccccccC-ccccCccCEEEEccc
Q 036454          231 WLIEEHLWNPDSKLDSFLQNLEFLEVKKCALSLISLVPS-SASFRNLTVLKVCNC  284 (410)
Q Consensus       231 ~~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~l~~l~~~-~~~~~~L~~L~l~~c  284 (410)
                          +.+.......+..+++|++|++++|  .++.++.. +..+++|++|+++++
T Consensus        88 ----N~l~~i~~~~f~~l~~L~~L~L~~N--~l~~~~~~~~~~l~~L~~L~L~~N  136 (193)
T 2wfh_A           88 ----NRLRCIPPRTFDGLKSLRLLSLHGN--DISVVPEGAFNDLSALSHLAIGAN  136 (193)
T ss_dssp             ----SCCCBCCTTTTTTCTTCCEEECCSS--CCCBCCTTTTTTCTTCCEEECCSS
T ss_pred             ----CccCEeCHHHhCCCCCCCEEECCCC--CCCeeChhhhhcCccccEEEeCCC
Confidence                2332222334555666666666666  44444442 345566666666554

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=98.80  E-value=3.1e-08  Score=83.77  Aligned_cols=39  Identities=15%  Similarity=0.207  Sum_probs=16.4

Q ss_pred             cccCcccEEEeccCcCccccCchhHHhhhhccceEeecccc
Q 036454           44 LIFRNLVVVRIFDCQSLKNIFPTSIARSLLRLETLSIKDCG   84 (410)
Q Consensus        44 ~~l~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~   84 (410)
                      ..+++|++|+++++ .+..+.+..+ .++++|++|+++++.
T Consensus        51 ~~l~~L~~L~Ls~N-~l~~~~~~~~-~~l~~L~~L~Ls~N~   89 (192)
T 1w8a_A           51 GRLPHLVKLELKRN-QLTGIEPNAF-EGASHIQELQLGENK   89 (192)
T ss_dssp             GGCTTCCEEECCSS-CCCCBCTTTT-TTCTTCCEEECCSCC
T ss_pred             ccCCCCCEEECCCC-CCCCcCHhHc-CCcccCCEEECCCCc
Confidence            34444444444444 2333322222 344444444444443

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=98.79  E-value=8.4e-09  Score=86.00  Aligned_cols=106  Identities=20%  Similarity=0.197  Sum_probs=68.5

Q ss_pred             ccCceEEEeccccccccccchhhccccccCcccEEEeCCcccccccccCCCCccccccccceEEEEeccccccccccc--
Q 036454          191 HNLEKLVLSTCEYKKIFSCEEVEEHAEGIAQIKSLKLKKLWLIEEHLWNPDSKLDSFLQNLEFLEVKKCALSLISLVP--  268 (410)
Q Consensus       191 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~l~~l~~--  268 (410)
                      ++|+.|++++|.+..+ .      .+..+++|++|+++++     .+.......+..+++|++|++++|  .+.+++.  
T Consensus        42 ~~L~~L~Ls~N~l~~~-~------~l~~l~~L~~L~Ls~N-----~l~~~~~~~~~~l~~L~~L~L~~N--~i~~~~~~~  107 (176)
T 1a9n_A           42 DQFDAIDFSDNEIRKL-D------GFPLLRRLKTLLVNNN-----RICRIGEGLDQALPDLTELILTNN--SLVELGDLD  107 (176)
T ss_dssp             TCCSEEECCSSCCCEE-C------CCCCCSSCCEEECCSS-----CCCEECSCHHHHCTTCCEEECCSC--CCCCGGGGG
T ss_pred             CCCCEEECCCCCCCcc-c------ccccCCCCCEEECCCC-----cccccCcchhhcCCCCCEEECCCC--cCCcchhhH
Confidence            4888888888877665 2      3566778888888773     221111223467788888888887  4565554  


Q ss_pred             CccccCccCEEEEcccCCcccccch--hhhhcCCCccEEEeccCc
Q 036454          269 SSASFRNLTVLKVCNCWQLISLVTP--QTAKTLVQLRELRVSECN  311 (410)
Q Consensus       269 ~~~~~~~L~~L~l~~c~~l~~~~~~--~~~~~l~~L~~L~l~~c~  311 (410)
                      .+..+++|++|++++++ +..++..  .....+++|+.|+++++.
T Consensus       108 ~l~~l~~L~~L~l~~N~-i~~~~~~~~~~~~~l~~L~~Ld~~~n~  151 (176)
T 1a9n_A          108 PLASLKSLTYLCILRNP-VTNKKHYRLYVIYKVPQVRVLDFQKVK  151 (176)
T ss_dssp             GGGGCTTCCEEECCSSG-GGGSTTHHHHHHHHCTTCSEETTEECC
T ss_pred             hhhcCCCCCEEEecCCC-CCCcHhHHHHHHHHCCccceeCCCcCC
Confidence            56677788888887764 5444321  135677788888777653

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=98.78  E-value=2.6e-08  Score=83.00  Aligned_cols=105  Identities=16%  Similarity=0.168  Sum_probs=44.9

Q ss_pred             cccEEEEEeCCCccchhhhhhhcccCceEEEeccccccccccchhhccccccCcccEEEeCCcccccccccCCCCccccc
Q 036454          168 KLKILHFISDGSDFFQVGLLQNIHNLEKLVLSTCEYKKIFSCEEVEEHAEGIAQIKSLKLKKLWLIEEHLWNPDSKLDSF  247 (410)
Q Consensus       168 ~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~  247 (410)
                      +|+.|++....+...+...+..+++|+.|+++++.+..+..     ..+..+++|++|++++     +.+.......+..
T Consensus        29 ~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~-----~~~~~l~~L~~L~l~~-----N~l~~~~~~~~~~   98 (177)
T 2o6r_A           29 SATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPD-----GVFDKLTKLTILYLHE-----NKLQSLPNGVFDK   98 (177)
T ss_dssp             TCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCT-----TTTTTCTTCCEEECCS-----SCCCCCCTTTTTT
T ss_pred             CCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeCh-----hHccCCCccCEEECCC-----CCccccCHHHhhC
Confidence            33333333333333333334555666666666555544332     1123445555555554     2221111222344


Q ss_pred             cccceEEEEecccccccccccCc-cccCccCEEEEccc
Q 036454          248 LQNLEFLEVKKCALSLISLVPSS-ASFRNLTVLKVCNC  284 (410)
Q Consensus       248 ~~~L~~L~l~~~~~~l~~l~~~~-~~~~~L~~L~l~~c  284 (410)
                      +++|++|++++|  .++.++... ..+++|++|+++++
T Consensus        99 l~~L~~L~l~~N--~l~~~~~~~~~~l~~L~~L~l~~N  134 (177)
T 2o6r_A           99 LTQLKELALDTN--QLKSVPDGIFDRLTSLQKIWLHTN  134 (177)
T ss_dssp             CTTCCEEECCSS--CCSCCCTTTTTTCTTCCEEECCSS
T ss_pred             CcccCEEECcCC--cceEeCHHHhcCCcccCEEEecCC
Confidence            455555555555  333333322 33445555555443

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=98.75  E-value=2.5e-08  Score=84.40  Aligned_cols=86  Identities=21%  Similarity=0.236  Sum_probs=48.2

Q ss_pred             hhhcccCceEEEeccccccccccchhhccccccCcccEEEeCCcccccccccCCCCccccccccceEEEEeccccccccc
Q 036454          187 LQNIHNLEKLVLSTCEYKKIFSCEEVEEHAEGIAQIKSLKLKKLWLIEEHLWNPDSKLDSFLQNLEFLEVKKCALSLISL  266 (410)
Q Consensus       187 l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~l~~l  266 (410)
                      +..+++|+.|+++++.+..+.+     ..+.++++|++|++++     +.+.......+..+++|++|++++|  .++.+
T Consensus        50 ~~~l~~L~~L~Ls~N~l~~~~~-----~~~~~l~~L~~L~Ls~-----N~l~~~~~~~~~~l~~L~~L~L~~N--~l~~~  117 (192)
T 1w8a_A           50 FGRLPHLVKLELKRNQLTGIEP-----NAFEGASHIQELQLGE-----NKIKEISNKMFLGLHQLKTLNLYDN--QISCV  117 (192)
T ss_dssp             GGGCTTCCEEECCSSCCCCBCT-----TTTTTCTTCCEEECCS-----CCCCEECSSSSTTCTTCCEEECCSS--CCCEE
T ss_pred             cccCCCCCEEECCCCCCCCcCH-----hHcCCcccCCEEECCC-----CcCCccCHHHhcCCCCCCEEECCCC--cCCee
Confidence            4566777777777766655532     1345566666666666     2222112233455666777777766  34433


Q ss_pred             -ccCccccCccCEEEEccc
Q 036454          267 -VPSSASFRNLTVLKVCNC  284 (410)
Q Consensus       267 -~~~~~~~~~L~~L~l~~c  284 (410)
                       +..+..+++|++|+++++
T Consensus       118 ~~~~~~~l~~L~~L~L~~N  136 (192)
T 1w8a_A          118 MPGSFEHLNSLTSLNLASN  136 (192)
T ss_dssp             CTTSSTTCTTCCEEECTTC
T ss_pred             CHHHhhcCCCCCEEEeCCC
Confidence             334555666666666654

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=98.72  E-value=6e-08  Score=80.79  Aligned_cols=95  Identities=13%  Similarity=0.076  Sum_probs=44.6

Q ss_pred             cccccccCCcEEEecCccccccccccCCccccccCcccEEEeccCcCccccCchhHHhhhhccceEeeccccCcceEecc
Q 036454           13 THSGAATQLRELHVFHLPKLTKLWNKDPQGKLIFRNLVVVRIFDCQSLKNIFPTSIARSLLRLETLSIKDCGSVEEIVAN   92 (410)
Q Consensus        13 ~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~   92 (410)
                      .+.+.+++|+.|+++++. ++.+.   +..+..+++|++|+++++ .+..+++..+ .++++|++|+++++. +..++. 
T Consensus        22 ~p~~~~~~l~~L~l~~n~-l~~~~---~~~~~~l~~L~~L~l~~n-~l~~~~~~~~-~~l~~L~~L~l~~N~-l~~~~~-   93 (177)
T 2o6r_A           22 VPTGIPSSATRLELESNK-LQSLP---HGVFDKLTQLTKLSLSQN-QIQSLPDGVF-DKLTKLTILYLHENK-LQSLPN-   93 (177)
T ss_dssp             CCTTCCTTCSEEECCSSC-CCCCC---TTTTTTCTTCSEEECCSS-CCCCCCTTTT-TTCTTCCEEECCSSC-CCCCCT-
T ss_pred             CCCCCCCCCcEEEeCCCc-ccEeC---HHHhcCcccccEEECCCC-cceEeChhHc-cCCCccCEEECCCCC-ccccCH-
Confidence            333444556666665542 22220   122345556666666555 3444433222 355566666665554 444432 


Q ss_pred             CCCCCCCcccccCCCccEEeeccCCCccccc
Q 036454           93 DGRGNDAATKFIFPSLTFLRLRDLPDLTTFY  123 (410)
Q Consensus        93 ~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~  123 (410)
                             ..+..+++|+.|+++++ .+..++
T Consensus        94 -------~~~~~l~~L~~L~l~~N-~l~~~~  116 (177)
T 2o6r_A           94 -------GVFDKLTQLKELALDTN-QLKSVP  116 (177)
T ss_dssp             -------TTTTTCTTCCEEECCSS-CCSCCC
T ss_pred             -------HHhhCCcccCEEECcCC-cceEeC
Confidence                   12344555666666555 344433

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=98.69  E-value=1.3e-06  Score=82.48  Aligned_cols=231  Identities=10%  Similarity=0.096  Sum_probs=136.1

Q ss_pred             cccEEEeccCcCccccCchhHHhhhhccceEeeccccCcceEeccCCCCCCCcccccCCCccEEeeccCCCccccccCcc
Q 036454           48 NLVVVRIFDCQSLKNIFPTSIARSLLRLETLSIKDCGSVEEIVANDGRGNDAATKFIFPSLTFLRLRDLPDLTTFYSGMH  127 (410)
Q Consensus        48 ~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~  127 (410)
                      +|+.+.+...  ++.+....+. + .+|+++.+..  +++.++..        .+..+++|+.+++.++ .++.++...+
T Consensus       136 ~L~~i~l~~~--i~~I~~~aF~-~-~~L~~i~lp~--~l~~I~~~--------aF~~c~~L~~l~l~~n-~l~~I~~~aF  200 (401)
T 4fdw_A          136 QIAKVVLNEG--LKSIGDMAFF-N-STVQEIVFPS--TLEQLKED--------IFYYCYNLKKADLSKT-KITKLPASTF  200 (401)
T ss_dssp             CCSEEECCTT--CCEECTTTTT-T-CCCCEEECCT--TCCEECSS--------TTTTCTTCCEEECTTS-CCSEECTTTT
T ss_pred             CccEEEeCCC--ccEECHHhcC-C-CCceEEEeCC--CccEehHH--------HhhCcccCCeeecCCC-cceEechhhE
Confidence            5666666432  4445444332 3 2566666654  35555531        3345566666666654 4555544443


Q ss_pred             cCCCCCceEEEEccC---------CccccccEEEeeccCcccccccc--cccccEEEEEeCCCccchhhhhhhcccCceE
Q 036454          128 ILECPELRKLEVNHV---------DVFANLEELTLSKCIFTTWRQAQ--FHKLKILHFISDGSDFFQVGLLQNIHNLEKL  196 (410)
Q Consensus       128 ~~~~~~L~~L~l~~~---------~~l~~L~~L~i~~~~~~~~~~~~--l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L  196 (410)
                      .  +.+|+.+.+...         ..+++|+.+.+..+ ...+....  -.+|+.+.+ ...+..+....+.++++|+.+
T Consensus       201 ~--~~~L~~l~lp~~l~~I~~~aF~~~~~L~~l~l~~~-l~~I~~~aF~~~~L~~i~l-p~~i~~I~~~aF~~c~~L~~l  276 (401)
T 4fdw_A          201 V--YAGIEEVLLPVTLKEIGSQAFLKTSQLKTIEIPEN-VSTIGQEAFRESGITTVKL-PNGVTNIASRAFYYCPELAEV  276 (401)
T ss_dssp             T--TCCCSEEECCTTCCEECTTTTTTCTTCCCEECCTT-CCEECTTTTTTCCCSEEEE-ETTCCEECTTTTTTCTTCCEE
T ss_pred             e--ecccCEEEeCCchheehhhHhhCCCCCCEEecCCC-ccCccccccccCCccEEEe-CCCccEEChhHhhCCCCCCEE
Confidence            2  356666665433         23456677766653 22222222  457888888 344566666778899999999


Q ss_pred             EEeccccccccccchhhccccccCcccEEEeCCcccccccccCCCCccccccccceEEEEecccccccccccC-ccccCc
Q 036454          197 VLSTCEYKKIFSCEEVEEHAEGIAQIKSLKLKKLWLIEEHLWNPDSKLDSFLQNLEFLEVKKCALSLISLVPS-SASFRN  275 (410)
Q Consensus       197 ~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~l~~l~~~-~~~~~~  275 (410)
                      .+.++..............+.++++|+.+.+.+  ++ ..+   +...+..|++|+.+.+..   .++.+... +..+ +
T Consensus       277 ~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~--~i-~~I---~~~aF~~c~~L~~l~lp~---~l~~I~~~aF~~~-~  346 (401)
T 4fdw_A          277 TTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPE--SI-RIL---GQGLLGGNRKVTQLTIPA---NVTQINFSAFNNT-G  346 (401)
T ss_dssp             EEESSCCCCCTTCEECTTTTTTCTTCCEECCCT--TC-CEE---CTTTTTTCCSCCEEEECT---TCCEECTTSSSSS-C
T ss_pred             EeCCccccCCcccEECHHHhhCCccCCeEEeCC--ce-EEE---hhhhhcCCCCccEEEECc---cccEEcHHhCCCC-C
Confidence            998865431100012234578899999999974  34 444   234578899999999966   34555432 3455 8


Q ss_pred             cCEEEEcccCCcccccchhhhhcC-CCccEEEecc
Q 036454          276 LTVLKVCNCWQLISLVTPQTAKTL-VQLRELRVSE  309 (410)
Q Consensus       276 L~~L~l~~c~~l~~~~~~~~~~~l-~~L~~L~l~~  309 (410)
                      |+.+.+.+. .+..+.. .....+ ..++.|++-.
T Consensus       347 L~~l~l~~n-~~~~l~~-~~F~~~~~~l~~l~vp~  379 (401)
T 4fdw_A          347 IKEVKVEGT-TPPQVFE-KVWYGFPDDITVIRVPA  379 (401)
T ss_dssp             CCEEEECCS-SCCBCCC-SSCCCSCTTCCEEEECG
T ss_pred             CCEEEEcCC-CCccccc-ccccCCCCCccEEEeCH
Confidence            999999775 3444432 122334 4688888865

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=98.65  E-value=7e-09  Score=88.27  Aligned_cols=108  Identities=25%  Similarity=0.307  Sum_probs=53.0

Q ss_pred             hhhhcccCceEEEeccccccccccchhhccccccCcccEEEeCCcccccccccCCCCccccccccceEEEEecccccccc
Q 036454          186 LLQNIHNLEKLVLSTCEYKKIFSCEEVEEHAEGIAQIKSLKLKKLWLIEEHLWNPDSKLDSFLQNLEFLEVKKCALSLIS  265 (410)
Q Consensus       186 ~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~l~~  265 (410)
                      .+..+++|+.|++++|.+..+..       +..+++|++|+++++. + ..+    +.....+++|++|++++|  .++.
T Consensus        43 ~~~~l~~L~~L~ls~n~l~~l~~-------~~~l~~L~~L~l~~n~-l-~~l----~~~~~~~~~L~~L~L~~N--~l~~  107 (198)
T 1ds9_A           43 TLSTLKACKHLALSTNNIEKISS-------LSGMENLRILSLGRNL-I-KKI----ENLDAVADTLEELWISYN--QIAS  107 (198)
T ss_dssp             HHHHTTTCSEEECSEEEESCCCC-------HHHHTTCCEEEEEEEE-E-CSC----SSHHHHHHHCSEEEEEEE--ECCC
T ss_pred             HHhcCCCCCEEECCCCCCccccc-------cccCCCCCEEECCCCC-c-ccc----cchhhcCCcCCEEECcCC--cCCc
Confidence            34556666666666665544321       3445566666665521 1 111    123344456666666665  3444


Q ss_pred             cccCccccCccCEEEEcccCCcccccchhhhhcCCCccEEEeccC
Q 036454          266 LVPSSASFRNLTVLKVCNCWQLISLVTPQTAKTLVQLRELRVSEC  310 (410)
Q Consensus       266 l~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c  310 (410)
                      ++ .+..+++|++|+++++ .+..++.......+++|++|+++++
T Consensus       108 l~-~~~~l~~L~~L~l~~N-~i~~~~~~~~l~~l~~L~~L~l~~N  150 (198)
T 1ds9_A          108 LS-GIEKLVNLRVLYMSNN-KITNWGEIDKLAALDKLEDLLLAGN  150 (198)
T ss_dssp             HH-HHHHHHHSSEEEESEE-ECCCHHHHHHHTTTTTCSEEEECSC
T ss_pred             CC-ccccCCCCCEEECCCC-cCCchhHHHHHhcCCCCCEEEecCC
Confidence            43 3445555666666554 2433322123445555666666554

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=98.64  E-value=3.4e-06  Score=79.70  Aligned_cols=254  Identities=12%  Similarity=0.118  Sum_probs=161.3

Q ss_pred             ccCcccEEEeccCcCccccCchhHHhhhhccceEeeccccCcceEeccCCCCCCCcccccCCCccEEeeccCCCcccccc
Q 036454           45 IFRNLVVVRIFDCQSLKNIFPTSIARSLLRLETLSIKDCGSVEEIVANDGRGNDAATKFIFPSLTFLRLRDLPDLTTFYS  124 (410)
Q Consensus        45 ~l~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~  124 (410)
                      .+..++.+.+-+  .++.++...+. ++ +|+.+.+...  ++.++...|        .. .+|+.+.+..  .++.+..
T Consensus       111 ~~~~l~~i~ip~--~i~~I~~~aF~-~~-~L~~i~l~~~--i~~I~~~aF--------~~-~~L~~i~lp~--~l~~I~~  173 (401)
T 4fdw_A          111 ILKGYNEIILPN--SVKSIPKDAFR-NS-QIAKVVLNEG--LKSIGDMAF--------FN-STVQEIVFPS--TLEQLKE  173 (401)
T ss_dssp             ECSSCSEEECCT--TCCEECTTTTT-TC-CCSEEECCTT--CCEECTTTT--------TT-CCCCEEECCT--TCCEECS
T ss_pred             ecCCccEEEECC--ccCEehHhhcc-cC-CccEEEeCCC--ccEECHHhc--------CC-CCceEEEeCC--CccEehH
Confidence            557788888753  35566555543 44 7999998753  778876332        22 4689998875  5666666


Q ss_pred             CcccCCCCCceEEEEccC---------CccccccEEEeeccCcccccccc---cccccEEEEEeCCCccchhhhhhhccc
Q 036454          125 GMHILECPELRKLEVNHV---------DVFANLEELTLSKCIFTTWRQAQ---FHKLKILHFISDGSDFFQVGLLQNIHN  192 (410)
Q Consensus       125 ~~~~~~~~~L~~L~l~~~---------~~l~~L~~L~i~~~~~~~~~~~~---l~~L~~L~l~~~~~~~~~~~~l~~l~~  192 (410)
                      ..+. .+++|+.+++.++         -...+|+.+.+..+ ...+....   +++|+.+.+.. .+..+....+.+ .+
T Consensus       174 ~aF~-~c~~L~~l~l~~n~l~~I~~~aF~~~~L~~l~lp~~-l~~I~~~aF~~~~~L~~l~l~~-~l~~I~~~aF~~-~~  249 (401)
T 4fdw_A          174 DIFY-YCYNLKKADLSKTKITKLPASTFVYAGIEEVLLPVT-LKEIGSQAFLKTSQLKTIEIPE-NVSTIGQEAFRE-SG  249 (401)
T ss_dssp             STTT-TCTTCCEEECTTSCCSEECTTTTTTCCCSEEECCTT-CCEECTTTTTTCTTCCCEECCT-TCCEECTTTTTT-CC
T ss_pred             HHhh-CcccCCeeecCCCcceEechhhEeecccCEEEeCCc-hheehhhHhhCCCCCCEEecCC-CccCcccccccc-CC
Confidence            6654 7899999999764         11357888888743 44444333   77899998833 245555555666 78


Q ss_pred             CceEEEeccccccccccchhhccccccCcccEEEeCCcccccccccCCCCccccccccceEEEEeccccccccccc-Ccc
Q 036454          193 LEKLVLSTCEYKKIFSCEEVEEHAEGIAQIKSLKLKKLWLIEEHLWNPDSKLDSFLQNLEFLEVKKCALSLISLVP-SSA  271 (410)
Q Consensus       193 L~~L~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~l~~l~~-~~~  271 (410)
                      |+.+.+.. .+..+..     ..+.++++|+.+.+.+...........+...+..|++|+.+.+.+   .++.+.. .+.
T Consensus       250 L~~i~lp~-~i~~I~~-----~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~---~i~~I~~~aF~  320 (401)
T 4fdw_A          250 ITTVKLPN-GVTNIAS-----RAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPE---SIRILGQGLLG  320 (401)
T ss_dssp             CSEEEEET-TCCEECT-----TTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCCT---TCCEECTTTTT
T ss_pred             ccEEEeCC-CccEECh-----hHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeCC---ceEEEhhhhhc
Confidence            99999954 3444422     357788999999997621100000001234578899999999985   4555554 345


Q ss_pred             ccCccCEEEEcccCCcccccchhhhhcCCCccEEEeccCcccchhc-cccCCCCccccc-cccceeecCc
Q 036454          272 SFRNLTVLKVCNCWQLISLVTPQTAKTLVQLRELRVSECNRLEEIV-ANDGDADDEIVF-SKLKWLFLES  339 (410)
Q Consensus       272 ~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~-~~~~~~~~~~~~-~~L~~L~l~~  339 (410)
                      .+++|+.+.+..  +++.+.. .....+ +|+++.+.+... ..+. ..+.+      + .+++.|.+-.
T Consensus       321 ~c~~L~~l~lp~--~l~~I~~-~aF~~~-~L~~l~l~~n~~-~~l~~~~F~~------~~~~l~~l~vp~  379 (401)
T 4fdw_A          321 GNRKVTQLTIPA--NVTQINF-SAFNNT-GIKEVKVEGTTP-PQVFEKVWYG------FPDDITVIRVPA  379 (401)
T ss_dssp             TCCSCCEEEECT--TCCEECT-TSSSSS-CCCEEEECCSSC-CBCCCSSCCC------SCTTCCEEEECG
T ss_pred             CCCCccEEEECc--cccEEcH-HhCCCC-CCCEEEEcCCCC-cccccccccC------CCCCccEEEeCH
Confidence            678999999954  4666543 334666 899999987532 2222 22222      3 3677777765

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=98.54  E-value=6.7e-08  Score=98.62  Aligned_cols=107  Identities=21%  Similarity=0.176  Sum_probs=64.3

Q ss_pred             ccccCcccEEEeCCcccccccccCCCCccccccccceEEEEecccccccccccCccccCccCEEEEcccCCcccccchhh
Q 036454          216 AEGIAQIKSLKLKKLWLIEEHLWNPDSKLDSFLQNLEFLEVKKCALSLISLVPSSASFRNLTVLKVCNCWQLISLVTPQT  295 (410)
Q Consensus       216 ~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~l~~l~~~~~~~~~L~~L~l~~c~~l~~~~~~~~  295 (410)
                      +..+++|+.|+|+++...  .+    ...+..+++|++|++++|  .++.+|..++.+++|++|+++++ .+..++  ..
T Consensus       220 ~~~l~~L~~L~Ls~n~l~--~l----~~~~~~l~~L~~L~Ls~N--~l~~lp~~~~~l~~L~~L~Ls~N-~l~~lp--~~  288 (727)
T 4b8c_D          220 KYDDQLWHALDLSNLQIF--NI----SANIFKYDFLTRLYLNGN--SLTELPAEIKNLSNLRVLDLSHN-RLTSLP--AE  288 (727)
T ss_dssp             --CCCCCCEEECTTSCCS--CC----CGGGGGCCSCSCCBCTTS--CCSCCCGGGGGGTTCCEEECTTS-CCSSCC--SS
T ss_pred             hccCCCCcEEECCCCCCC--CC----ChhhcCCCCCCEEEeeCC--cCcccChhhhCCCCCCEEeCcCC-cCCccC--hh
Confidence            455667777777763211  11    222345677777777777  45566666666777777777665 355554  23


Q ss_pred             hhcCCCccEEEeccCcccchhccccCCCCccccccccceeecCcC
Q 036454          296 AKTLVQLRELRVSECNRLEEIVANDGDADDEIVFSKLKWLFLESS  340 (410)
Q Consensus       296 ~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~L~~L~l~~c  340 (410)
                      +..+++|++|++++| .++.++..++.      +++|+.|+|+++
T Consensus       289 ~~~l~~L~~L~L~~N-~l~~lp~~~~~------l~~L~~L~L~~N  326 (727)
T 4b8c_D          289 LGSCFQLKYFYFFDN-MVTTLPWEFGN------LCNLQFLGVEGN  326 (727)
T ss_dssp             GGGGTTCSEEECCSS-CCCCCCSSTTS------CTTCCCEECTTS
T ss_pred             hcCCCCCCEEECCCC-CCCccChhhhc------CCCccEEeCCCC
Confidence            466677777777764 45566666666      677777777764

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=98.53  E-value=6.9e-09  Score=88.29  Aligned_cols=123  Identities=20%  Similarity=0.134  Sum_probs=75.5

Q ss_pred             cccccEEEEEeCCCccchhhhhhhcccCceEEEeccccccccccchhhccccccCcccEEEeCCcccccccccCCCCccc
Q 036454          166 FHKLKILHFISDGSDFFQVGLLQNIHNLEKLVLSTCEYKKIFSCEEVEEHAEGIAQIKSLKLKKLWLIEEHLWNPDSKLD  245 (410)
Q Consensus       166 l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~  245 (410)
                      +++|+.|+++...+..++  .+.++++|+.|++++|.+..+..      ....+++|++|+++++. + ..+     ..+
T Consensus        47 l~~L~~L~ls~n~l~~l~--~~~~l~~L~~L~l~~n~l~~l~~------~~~~~~~L~~L~L~~N~-l-~~l-----~~~  111 (198)
T 1ds9_A           47 LKACKHLALSTNNIEKIS--SLSGMENLRILSLGRNLIKKIEN------LDAVADTLEELWISYNQ-I-ASL-----SGI  111 (198)
T ss_dssp             TTTCSEEECSEEEESCCC--CHHHHTTCCEEEEEEEEECSCSS------HHHHHHHCSEEEEEEEE-C-CCH-----HHH
T ss_pred             CCCCCEEECCCCCCcccc--ccccCCCCCEEECCCCCcccccc------hhhcCCcCCEEECcCCc-C-CcC-----Ccc
Confidence            455555555333333444  45677888888888877665543      33445788888887742 2 111     245


Q ss_pred             cccccceEEEEeccccccccccc--CccccCccCEEEEcccCCcccccc---------hhhhhcCCCccEEE
Q 036454          246 SFLQNLEFLEVKKCALSLISLVP--SSASFRNLTVLKVCNCWQLISLVT---------PQTAKTLVQLRELR  306 (410)
Q Consensus       246 ~~~~~L~~L~l~~~~~~l~~l~~--~~~~~~~L~~L~l~~c~~l~~~~~---------~~~~~~l~~L~~L~  306 (410)
                      ..+++|++|++++|  .++.++.  .+..+++|++|++++++ +....+         ......+++|+.|+
T Consensus       112 ~~l~~L~~L~l~~N--~i~~~~~~~~l~~l~~L~~L~l~~N~-l~~~~~~~~~~~~~~~~~~~~l~~L~~Ld  180 (198)
T 1ds9_A          112 EKLVNLRVLYMSNN--KITNWGEIDKLAALDKLEDLLLAGNP-LYNDYKENNATSEYRIEVVKRLPNLKKLD  180 (198)
T ss_dssp             HHHHHSSEEEESEE--ECCCHHHHHHHTTTTTCSEEEECSCH-HHHHHHTTTTHHHHHHHHHHHCSSCSEEC
T ss_pred             ccCCCCCEEECCCC--cCCchhHHHHHhcCCCCCEEEecCCc-cccccccccchHHHHHHHHHhCCCcEEEC
Confidence            67788888888888  4554432  45678888888887763 322211         12346778888776

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=98.53  E-value=9.5e-08  Score=97.53  Aligned_cols=107  Identities=20%  Similarity=0.059  Sum_probs=49.8

Q ss_pred             hhhcccCceEEEeccccccccccchhhccccccCcccEEEeCCcccccccccCCCCccccccccceEEEEeccccccccc
Q 036454          187 LQNIHNLEKLVLSTCEYKKIFSCEEVEEHAEGIAQIKSLKLKKLWLIEEHLWNPDSKLDSFLQNLEFLEVKKCALSLISL  266 (410)
Q Consensus       187 l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~l~~l  266 (410)
                      +..+++|+.|++++|.+..+..      ....+++|++|+|+++     .+. ..+..+..+++|++|++++|  .++.+
T Consensus       220 ~~~l~~L~~L~Ls~n~l~~l~~------~~~~l~~L~~L~Ls~N-----~l~-~lp~~~~~l~~L~~L~Ls~N--~l~~l  285 (727)
T 4b8c_D          220 KYDDQLWHALDLSNLQIFNISA------NIFKYDFLTRLYLNGN-----SLT-ELPAEIKNLSNLRVLDLSHN--RLTSL  285 (727)
T ss_dssp             --CCCCCCEEECTTSCCSCCCG------GGGGCCSCSCCBCTTS-----CCS-CCCGGGGGGTTCCEEECTTS--CCSSC
T ss_pred             hccCCCCcEEECCCCCCCCCCh------hhcCCCCCCEEEeeCC-----cCc-ccChhhhCCCCCCEEeCcCC--cCCcc
Confidence            3445555555555555443332      1224455555555542     221 11223445555555555555  34445


Q ss_pred             ccCccccCccCEEEEcccCCcccccchhhhhcCCCccEEEeccC
Q 036454          267 VPSSASFRNLTVLKVCNCWQLISLVTPQTAKTLVQLRELRVSEC  310 (410)
Q Consensus       267 ~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c  310 (410)
                      |..++.+++|++|+++++ .+..++.  .+..+++|++|+++++
T Consensus       286 p~~~~~l~~L~~L~L~~N-~l~~lp~--~~~~l~~L~~L~L~~N  326 (727)
T 4b8c_D          286 PAELGSCFQLKYFYFFDN-MVTTLPW--EFGNLCNLQFLGVEGN  326 (727)
T ss_dssp             CSSGGGGTTCSEEECCSS-CCCCCCS--STTSCTTCCCEECTTS
T ss_pred             ChhhcCCCCCCEEECCCC-CCCccCh--hhhcCCCccEEeCCCC
Confidence            555555555555555444 3444432  2445555555555554

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=98.51  E-value=7.6e-08  Score=79.12  Aligned_cols=89  Identities=11%  Similarity=0.280  Sum_probs=40.8

Q ss_pred             cceEEEEecccccccccccCccccCccCEEEEcccCCcccccchhhhh---cCCCccEEEeccCcccchhc-cccCCCCc
Q 036454          250 NLEFLEVKKCALSLISLVPSSASFRNLTVLKVCNCWQLISLVTPQTAK---TLVQLRELRVSECNRLEEIV-ANDGDADD  325 (410)
Q Consensus       250 ~L~~L~l~~~~~~l~~l~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~---~l~~L~~L~l~~c~~l~~~~-~~~~~~~~  325 (410)
                      +|++|++++|. ....-...+..+++|++|++++|.++++........   ..++|++|++++|+.+++.- ..+..   
T Consensus        62 ~L~~LDLs~~~-Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~---  137 (176)
T 3e4g_A           62 KIQAIDATDSC-IMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHH---  137 (176)
T ss_dssp             CEEEEEEESCC-CCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGG---
T ss_pred             eEeEEeCcCCC-ccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhc---
Confidence            45666666653 221112223455666666666665555443211111   12345555555555544321 11122   


Q ss_pred             cccccccceeecCcCcccce
Q 036454          326 EIVFSKLKWLFLESSESITS  345 (410)
Q Consensus       326 ~~~~~~L~~L~l~~c~~l~~  345 (410)
                         +++|++|++++|+.+++
T Consensus       138 ---~~~L~~L~L~~c~~Itd  154 (176)
T 3e4g_A          138 ---FRNLKYLFLSDLPGVKE  154 (176)
T ss_dssp             ---CTTCCEEEEESCTTCCC
T ss_pred             ---CCCCCEEECCCCCCCCc
Confidence               45555555555555554

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=98.43  E-value=1.4e-07  Score=77.53  Aligned_cols=93  Identities=13%  Similarity=0.189  Sum_probs=70.2

Q ss_pred             CccCEEEEcccCCcccccchhhhhcCCCccEEEeccCcccchhccc-cCCCCccccccccceeecCcCcccceecCCCcc
Q 036454          274 RNLTVLKVCNCWQLISLVTPQTAKTLVQLRELRVSECNRLEEIVAN-DGDADDEIVFSKLKWLFLESSESITSFCSGNYA  352 (410)
Q Consensus       274 ~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~-~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~  352 (410)
                      .+|++|++++|. +++... ..+..+++|++|++++|..+++.... +..  .....++|+.|+|++|+++++...... 
T Consensus        61 ~~L~~LDLs~~~-Itd~GL-~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~--~~~~~~~L~~L~Ls~C~~ITD~Gl~~L-  135 (176)
T 3e4g_A           61 YKIQAIDATDSC-IMSIGF-DHMEGLQYVEKIRLCKCHYIEDGCLERLSQ--LENLQKSMLEMEIISCGNVTDKGIIAL-  135 (176)
T ss_dssp             CCEEEEEEESCC-CCGGGG-GGGTTCSCCCEEEEESCTTCCHHHHHHHHT--CHHHHHHCCEEEEESCTTCCHHHHHHG-
T ss_pred             ceEeEEeCcCCC-ccHHHH-HHhcCCCCCCEEEeCCCCccCHHHHHHHHh--cccccCCCCEEEcCCCCcCCHHHHHHH-
Confidence            469999999996 766544 23478999999999999988764221 111  000135899999999999998776544 


Q ss_pred             cCCCCccEEEEecCCCCcc
Q 036454          353 FSFPSLEDLIVENCPKLNT  371 (410)
Q Consensus       353 ~~~~~L~~L~l~~c~~l~~  371 (410)
                      ..|++|++|++++|+.++.
T Consensus       136 ~~~~~L~~L~L~~c~~Itd  154 (176)
T 3e4g_A          136 HHFRNLKYLFLSDLPGVKE  154 (176)
T ss_dssp             GGCTTCCEEEEESCTTCCC
T ss_pred             hcCCCCCEEECCCCCCCCc
Confidence            3699999999999999875

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=98.38  E-value=8.3e-07  Score=73.62  Aligned_cols=100  Identities=16%  Similarity=0.200  Sum_probs=66.2

Q ss_pred             cEEEecCccccccccccCCccccccCcccEEEeccCcCccccCchhHHhhhhccceEeeccccCcceEeccCCCCCCCcc
Q 036454           22 RELHVFHLPKLTKLWNKDPQGKLIFRNLVVVRIFDCQSLKNIFPTSIARSLLRLETLSIKDCGSVEEIVANDGRGNDAAT  101 (410)
Q Consensus        22 ~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~  101 (410)
                      +.+++++. .++.+    |..+  .++|++|+++++ .+..+++..+ +++++|++|+++++. +..++.        ..
T Consensus        15 ~~l~~~~n-~l~~i----P~~~--~~~L~~L~Ls~N-~l~~~~~~~~-~~l~~L~~L~Ls~N~-l~~i~~--------~~   76 (174)
T 2r9u_A           15 TLVNCQNI-RLASV----PAGI--PTDKQRLWLNNN-QITKLEPGVF-DHLVNLQQLYFNSNK-LTAIPT--------GV   76 (174)
T ss_dssp             SEEECCSS-CCSSC----CSCC--CTTCSEEECCSS-CCCCCCTTTT-TTCTTCCEEECCSSC-CCCCCT--------TT
T ss_pred             cEEEeCCC-CCCcc----CCCc--CCCCcEEEeCCC-CccccCHHHh-cCCcCCCEEECCCCC-CCccCh--------hH
Confidence            56777765 34444    5554  388999999888 5666655443 688999999998886 777765        13


Q ss_pred             cccCCCccEEeeccCCCccccccCcccCCCCCceEEEEcc
Q 036454          102 KFIFPSLTFLRLRDLPDLTTFYSGMHILECPELRKLEVNH  141 (410)
Q Consensus       102 ~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~  141 (410)
                      +..+++|+.|+++++ .++.++...+. .+++|++|++.+
T Consensus        77 ~~~l~~L~~L~L~~N-~l~~l~~~~~~-~l~~L~~L~L~~  114 (174)
T 2r9u_A           77 FDKLTQLTQLDLNDN-HLKSIPRGAFD-NLKSLTHIYLYN  114 (174)
T ss_dssp             TTTCTTCCEEECCSS-CCCCCCTTTTT-TCTTCSEEECCS
T ss_pred             hCCcchhhEEECCCC-ccceeCHHHhc-cccCCCEEEeCC
Confidence            467889999999887 66666654332 344444444333

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=98.38  E-value=7.1e-07  Score=73.71  Aligned_cols=21  Identities=14%  Similarity=0.351  Sum_probs=10.9

Q ss_pred             hhhhcccCceEEEeccccccc
Q 036454          186 LLQNIHNLEKLVLSTCEYKKI  206 (410)
Q Consensus       186 ~l~~l~~L~~L~l~~~~~~~~  206 (410)
                      .+.++++|+.|++++|.+..+
T Consensus        49 ~~~~l~~L~~L~Ls~N~l~~l   69 (170)
T 3g39_A           49 VFDRLTQLTRLDLDNNQLTVL   69 (170)
T ss_dssp             TTTTCTTCSEEECCSSCCCCC
T ss_pred             hhcCcccCCEEECCCCCcCcc
Confidence            344555555555555554443

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}

Probab=98.37  E-value=2.3e-05  Score=73.90  Aligned_cols=164  Identities=10%  Similarity=0.085  Sum_probs=100.2

Q ss_pred             cccCceEEEeccccccccccchhhccccccCcccEEEeCCcccccccccCCCCccccccccceEEEEecccccccccccC
Q 036454          190 IHNLEKLVLSTCEYKKIFSCEEVEEHAEGIAQIKSLKLKKLWLIEEHLWNPDSKLDSFLQNLEFLEVKKCALSLISLVPS  269 (410)
Q Consensus       190 l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~l~~l~~~  269 (410)
                      ..+|+.+.+.... ..+..     ..+.++.+|+.+.+..-  . ..+   ....+..++.++.+......  +..  ..
T Consensus       229 ~~~l~~i~ip~~~-~~i~~-----~~f~~~~~l~~~~~~~~--~-~~i---~~~~F~~~~~l~~~~~~~~~--i~~--~~  292 (394)
T 4fs7_A          229 KTGVKNIIIPDSF-TELGK-----SVFYGCTDLESISIQNN--K-LRI---GGSLFYNCSGLKKVIYGSVI--VPE--KT  292 (394)
T ss_dssp             TCCCCEEEECTTC-CEECS-----STTTTCSSCCEEEECCT--T-CEE---CSCTTTTCTTCCEEEECSSE--ECT--TT
T ss_pred             cCCCceEEECCCc-eeccc-----ccccccccceeEEcCCC--c-cee---eccccccccccceeccCcee--ecc--cc
Confidence            4678888876432 22211     23566788888888651  2 222   22345667788877766542  111  12


Q ss_pred             ccccCccCEEEEcccCCcccccchhhhhcCCCccEEEeccCcccchhc-cccCCCCccccccccceeecCcCcccceecC
Q 036454          270 SASFRNLTVLKVCNCWQLISLVTPQTAKTLVQLRELRVSECNRLEEIV-ANDGDADDEIVFSKLKWLFLESSESITSFCS  348 (410)
Q Consensus       270 ~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~-~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~  348 (410)
                      ...+.+|+.+.+..  +++.+.. .....+.+|+.+++..  .++.+. ..+.+      +++|+++.+..  .++.+..
T Consensus       293 F~~~~~L~~i~l~~--~i~~I~~-~aF~~c~~L~~i~lp~--~v~~I~~~aF~~------c~~L~~i~lp~--~l~~I~~  359 (394)
T 4fs7_A          293 FYGCSSLTEVKLLD--SVKFIGE-EAFESCTSLVSIDLPY--LVEEIGKRSFRG------CTSLSNINFPL--SLRKIGA  359 (394)
T ss_dssp             TTTCTTCCEEEECT--TCCEECT-TTTTTCTTCCEECCCT--TCCEECTTTTTT------CTTCCEECCCT--TCCEECT
T ss_pred             cccccccccccccc--ccceech-hhhcCCCCCCEEEeCC--cccEEhHHhccC------CCCCCEEEECc--cccEehH
Confidence            35677888888854  3555542 3446778899988853  344442 22334      78899988864  3777766


Q ss_pred             CCcccCCCCccEEEEecCCCCcccCCCCCCCCCccee
Q 036454          349 GNYAFSFPSLEDLIVENCPKLNTFSAGVLKTPRLQAV  385 (410)
Q Consensus       349 ~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~L~~l  385 (410)
                      . .+.+|++|+.+.+..  +++.+...+...++|+.+
T Consensus       360 ~-aF~~C~~L~~i~lp~--~~~~~~~~F~~c~~L~~I  393 (394)
T 4fs7_A          360 N-AFQGCINLKKVELPK--RLEQYRYDFEDTTKFKWI  393 (394)
T ss_dssp             T-TBTTCTTCCEEEEEG--GGGGGGGGBCTTCEEEEE
T ss_pred             H-HhhCCCCCCEEEECC--CCEEhhheecCCCCCcEE
Confidence            5 366899999999864  455554455567777776

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=98.37  E-value=1.1e-06  Score=81.68  Aligned_cols=40  Identities=8%  Similarity=0.042  Sum_probs=26.0

Q ss_pred             cccccEEEEEeCCCccch----hhhhhhcccCceEEEecccccc
Q 036454          166 FHKLKILHFISDGSDFFQ----VGLLQNIHNLEKLVLSTCEYKK  205 (410)
Q Consensus       166 l~~L~~L~l~~~~~~~~~----~~~l~~l~~L~~L~l~~~~~~~  205 (410)
                      +++|+.|+++.+.+.+..    ...+.++++|+.|+++.|.+..
T Consensus       278 ~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~d  321 (362)
T 2ra8_A          278 LPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLSD  321 (362)
T ss_dssp             GGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCCH
T ss_pred             CCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCCH
Confidence            667888888555444422    1233567899999998886543

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=98.34  E-value=1.3e-06  Score=72.14  Aligned_cols=100  Identities=18%  Similarity=0.207  Sum_probs=67.6

Q ss_pred             CCcEEEecCccccccccccCCccccccCcccEEEeccCcCccccCchhHHhhhhccceEeeccccCcceEeccCCCCCCC
Q 036454           20 QLRELHVFHLPKLTKLWNKDPQGKLIFRNLVVVRIFDCQSLKNIFPTSIARSLLRLETLSIKDCGSVEEIVANDGRGNDA   99 (410)
Q Consensus        20 ~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~   99 (410)
                      ..+++++++. .++.+    |..+  .++|++|+++++ .+..+++..+ .++++|++|+++++. +..++.        
T Consensus        10 ~~~~l~~s~n-~l~~i----p~~~--~~~l~~L~L~~N-~i~~~~~~~~-~~l~~L~~L~Ls~N~-l~~l~~--------   71 (170)
T 3g39_A           10 SGTTVDCSGK-SLASV----PTGI--PTTTQVLYLYDN-QITKLEPGVF-DRLTQLTRLDLDNNQ-LTVLPA--------   71 (170)
T ss_dssp             ETTEEECTTS-CCSSC----CSCC--CTTCSEEECCSS-CCCCCCTTTT-TTCTTCSEEECCSSC-CCCCCT--------
T ss_pred             CCCEEEeCCC-CcCcc----CccC--CCCCcEEEcCCC-cCCccChhhh-cCcccCCEEECCCCC-cCccCh--------
Confidence            3567888776 44444    5553  488999999988 6666655444 688999999999886 777765        


Q ss_pred             cccccCCCccEEeeccCCCccccccCcccCCCCCceEEEE
Q 036454          100 ATKFIFPSLTFLRLRDLPDLTTFYSGMHILECPELRKLEV  139 (410)
Q Consensus       100 ~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l  139 (410)
                      ..+..+++|+.|+++++ .++.++...+. .+++|++|++
T Consensus        72 ~~f~~l~~L~~L~L~~N-~l~~~~~~~~~-~l~~L~~L~L  109 (170)
T 3g39_A           72 GVFDKLTQLTQLSLNDN-QLKSIPRGAFD-NLKSLTHIWL  109 (170)
T ss_dssp             TTTTTCTTCCEEECCSS-CCCCCCTTTTT-TCTTCCEEEC
T ss_pred             hhccCCCCCCEEECCCC-ccCEeCHHHhc-CCCCCCEEEe
Confidence            13467889999999987 67666654332 3444433333

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=98.31  E-value=1.3e-06  Score=72.35  Aligned_cols=21  Identities=19%  Similarity=0.447  Sum_probs=10.8

Q ss_pred             hhhhcccCceEEEeccccccc
Q 036454          186 LLQNIHNLEKLVLSTCEYKKI  206 (410)
Q Consensus       186 ~l~~l~~L~~L~l~~~~~~~~  206 (410)
                      .+.++++|+.|++++|.+..+
T Consensus        52 ~~~~l~~L~~L~Ls~N~l~~i   72 (174)
T 2r9u_A           52 VFDHLVNLQQLYFNSNKLTAI   72 (174)
T ss_dssp             TTTTCTTCCEEECCSSCCCCC
T ss_pred             HhcCCcCCCEEECCCCCCCcc
Confidence            344555555555555554443

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=98.29  E-value=1.2e-07  Score=88.93  Aligned_cols=171  Identities=16%  Similarity=0.049  Sum_probs=84.9

Q ss_pred             cccCCcEEEecCcccccc-ccccCCcccc-ccCcccEEEeccCcCccccCchhHHhhhhccceEeeccccCcceEeccCC
Q 036454           17 AATQLRELHVFHLPKLTK-LWNKDPQGKL-IFRNLVVVRIFDCQSLKNIFPTSIARSLLRLETLSIKDCGSVEEIVANDG   94 (410)
Q Consensus        17 ~~~~L~~L~l~~~~~l~~-~~~~~~~~~~-~l~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~   94 (410)
                      .+++|+.|+++++. ++. -+......+. ..++|++|++++| .+.+.....++..+++|++|++++|. +...+....
T Consensus        70 ~~~~L~~L~Ls~n~-l~~~~~~~l~~~L~~~~~~L~~L~Ls~n-~l~~~~~~~l~~~L~~L~~L~Ls~n~-l~~~~~~~L  146 (372)
T 3un9_A           70 VLSSLRQLNLAGVR-MTPVKCTVVAAVLGSGRHALDEVNLASC-QLDPAGLRTLLPVFLRARKLGLQLNS-LGPEACKDL  146 (372)
T ss_dssp             HHTTCCEEECTTSC-CCHHHHHHHHHHHSSCSSCEEEEECTTC-CCCHHHHHHTHHHHHTEEEEECCSSC-CCHHHHHHH
T ss_pred             HHhhCCEEEecCCC-CCHHHHHHHHHHHhhCCCCceEEEecCC-CCCHHHHHHHHHHHHhccHhhcCCCC-CCHHHHHHH
Confidence            35667777777763 221 1110001011 2257777777777 34433333344556677777777764 433221000


Q ss_pred             CCCCCccc-ccCCCccEEeeccCCCccccccCcccCCCCCceEEEEccCCccccccEEEeeccCcccccc-------ccc
Q 036454           95 RGNDAATK-FIFPSLTFLRLRDLPDLTTFYSGMHILECPELRKLEVNHVDVFANLEELTLSKCIFTTWRQ-------AQF  166 (410)
Q Consensus        95 ~~~~~~~~-~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~l~~L~~L~i~~~~~~~~~~-------~~l  166 (410)
                          +..+ ...++|+.|++++| .+.+.....+...+           ...++|++|++++|.+.....       ...
T Consensus       147 ----~~~L~~~~~~L~~L~Ls~n-~l~~~~~~~l~~~L-----------~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~  210 (372)
T 3un9_A          147 ----RDLLLHDQCQITTLRLSNN-PLTAAGVAVLMEGL-----------AGNTSVTHLSLLHTGLGDEGLELLAAQLDRN  210 (372)
T ss_dssp             ----HHHHHSTTCCCCEEECCSS-CCHHHHHHHHHHHH-----------HTCSSCCEEECTTSSCHHHHHHHHHHHGGGC
T ss_pred             ----HHHHHhcCCccceeeCCCC-CCChHHHHHHHHHH-----------hcCCCcCEEeCCCCCCCcHHHHHHHHHHhcC
Confidence                0011 12456777777776 33332111110000           112456666666665443211       015


Q ss_pred             ccccEEEEEeCCCccchh----hhhhhcccCceEEEeccccccc
Q 036454          167 HKLKILHFISDGSDFFQV----GLLQNIHNLEKLVLSTCEYKKI  206 (410)
Q Consensus       167 ~~L~~L~l~~~~~~~~~~----~~l~~l~~L~~L~l~~~~~~~~  206 (410)
                      ++|+.|+++.+.++....    ..+...++|+.|++++|.+...
T Consensus       211 ~~L~~L~Ls~N~i~~~g~~~l~~~L~~~~~L~~L~Ls~N~i~~~  254 (372)
T 3un9_A          211 RQLQELNVAYNGAGDTAALALARAAREHPSLELLHLYFNELSSE  254 (372)
T ss_dssp             SCCCEEECCSSCCCHHHHHHHHHHHHHCSSCCEEECTTSSCCHH
T ss_pred             CCcCeEECCCCCCCHHHHHHHHHHHHhCCCCCEEeccCCCCCHH
Confidence            578888885555554332    2345678999999999876544

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=98.27  E-value=1e-06  Score=81.87  Aligned_cols=37  Identities=8%  Similarity=-0.023  Sum_probs=17.5

Q ss_pred             ccccceeecCcCcccceecCCC---cccCCCCccEEEEecC
Q 036454          329 FSKLKWLFLESSESITSFCSGN---YAFSFPSLEDLIVENC  366 (410)
Q Consensus       329 ~~~L~~L~l~~c~~l~~~~~~~---~~~~~~~L~~L~l~~c  366 (410)
                      +++|++|+|+. +.+.+.....   ...++++|+.|+++.|
T Consensus       278 ~~~L~~LdLs~-n~L~d~G~~~L~~~L~~l~~L~~L~L~~n  317 (362)
T 2ra8_A          278 LPQLETMDISA-GVLTDEGARLLLDHVDKIKHLKFINMKYN  317 (362)
T ss_dssp             GGGCSEEECCS-SCCBHHHHHHHHTTHHHHTTCSEEECCSB
T ss_pred             CCCCCEEECCC-CCCChHHHHHHHhhcccCCcceEEECCCC
Confidence            55666666654 3344421111   1123566666666555

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}

Probab=98.25  E-value=6e-05  Score=71.00  Aligned_cols=124  Identities=12%  Similarity=0.008  Sum_probs=76.9

Q ss_pred             cccccccceEEEEecccccccccc-cCccccCccCEEEEcccCCcccccchhhhhcCCCccEEEeccCcccchhcc-ccC
Q 036454          244 LDSFLQNLEFLEVKKCALSLISLV-PSSASFRNLTVLKVCNCWQLISLVTPQTAKTLVQLRELRVSECNRLEEIVA-NDG  321 (410)
Q Consensus       244 ~~~~~~~L~~L~l~~~~~~l~~l~-~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~-~~~  321 (410)
                      .+..+.+++.+.+....   ..+. .....+..++.+.....    .++ ......+.+|+++.+..  .++.+.. .+.
T Consensus       248 ~f~~~~~l~~~~~~~~~---~~i~~~~F~~~~~l~~~~~~~~----~i~-~~~F~~~~~L~~i~l~~--~i~~I~~~aF~  317 (394)
T 4fs7_A          248 VFYGCTDLESISIQNNK---LRIGGSLFYNCSGLKKVIYGSV----IVP-EKTFYGCSSLTEVKLLD--SVKFIGEEAFE  317 (394)
T ss_dssp             TTTTCSSCCEEEECCTT---CEECSCTTTTCTTCCEEEECSS----EEC-TTTTTTCTTCCEEEECT--TCCEECTTTTT
T ss_pred             cccccccceeEEcCCCc---ceeeccccccccccceeccCce----eec-ccccccccccccccccc--ccceechhhhc
Confidence            45566777777776542   1222 22345566666655332    111 12346678899888854  3444432 233


Q ss_pred             CCCccccccccceeecCcCcccceecCCCcccCCCCccEEEEecCCCCcccCCCC-CCCCCcceeEec
Q 036454          322 DADDEIVFSKLKWLFLESSESITSFCSGNYAFSFPSLEDLIVENCPKLNTFSAGV-LKTPRLQAVQNW  388 (410)
Q Consensus       322 ~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~-~~~~~L~~l~~~  388 (410)
                      +      +++|+++.+..  .++.+... .+.+|.+|+.+.+..  +++.+.... ..+++|+.+.+.
T Consensus       318 ~------c~~L~~i~lp~--~v~~I~~~-aF~~c~~L~~i~lp~--~l~~I~~~aF~~C~~L~~i~lp  374 (394)
T 4fs7_A          318 S------CTSLVSIDLPY--LVEEIGKR-SFRGCTSLSNINFPL--SLRKIGANAFQGCINLKKVELP  374 (394)
T ss_dssp             T------CTTCCEECCCT--TCCEECTT-TTTTCTTCCEECCCT--TCCEECTTTBTTCTTCCEEEEE
T ss_pred             C------CCCCCEEEeCC--cccEEhHH-hccCCCCCCEEEECc--cccEehHHHhhCCCCCCEEEEC
Confidence            4      78899998864  47777655 356799999998853  477776553 467999999995

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=98.23  E-value=1.3e-07  Score=88.56  Aligned_cols=14  Identities=21%  Similarity=0.093  Sum_probs=6.8

Q ss_pred             cccCceEEEecccc
Q 036454          190 IHNLEKLVLSTCEY  203 (410)
Q Consensus       190 l~~L~~L~l~~~~~  203 (410)
                      +++|+.|++++|.+
T Consensus       125 L~~L~~L~Ls~n~l  138 (372)
T 3un9_A          125 FLRARKLGLQLNSL  138 (372)
T ss_dssp             HHTEEEEECCSSCC
T ss_pred             HHhccHhhcCCCCC
Confidence            34455555555443

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=97.94  E-value=2.4e-05  Score=72.36  Aligned_cols=102  Identities=21%  Similarity=0.144  Sum_probs=64.4

Q ss_pred             EEEecCccccccccccCCccccccCcccEEEeccCcCccccCchhHHhhhhccceEeeccccCcceEeccCCCCCCCccc
Q 036454           23 ELHVFHLPKLTKLWNKDPQGKLIFRNLVVVRIFDCQSLKNIFPTSIARSLLRLETLSIKDCGSVEEIVANDGRGNDAATK  102 (410)
Q Consensus        23 ~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~  102 (410)
                      .+++.+...++.+    |. +..+++|++|+|+++..+..+++..+ +++++|++|+++++. +..++.        ..+
T Consensus        12 ~v~~~~~n~l~~i----p~-l~~~~~L~~L~l~~~n~l~~~~~~~~-~~l~~L~~L~l~~N~-l~~~~~--------~~~   76 (347)
T 2ifg_A           12 GLRCTRDGALDSL----HH-LPGAENLTELYIENQQHLQHLELRDL-RGLGELRNLTIVKSG-LRFVAP--------DAF   76 (347)
T ss_dssp             CEECCSSCCCTTT----TT-SCSCSCCSEEECCSCSSCCEECGGGS-CSCCCCSEEECCSSC-CCEECT--------TGG
T ss_pred             EEEcCCCCCCCcc----CC-CCCCCCeeEEEccCCCCCCCcChhHh-ccccCCCEEECCCCc-cceeCH--------HHh
Confidence            3455544344444    66 77788888888886336776765443 578888888888875 777664        145


Q ss_pred             ccCCCccEEeeccCCCccccccCcccCCCCCceEEEEccC
Q 036454          103 FIFPSLTFLRLRDLPDLTTFYSGMHILECPELRKLEVNHV  142 (410)
Q Consensus       103 ~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~~  142 (410)
                      ..+++|+.|+|+++ .+..++...+. .++ |+.|++.++
T Consensus        77 ~~l~~L~~L~l~~N-~l~~~~~~~~~-~~~-L~~l~l~~N  113 (347)
T 2ifg_A           77 HFTPRLSRLNLSFN-ALESLSWKTVQ-GLS-LQELVLSGN  113 (347)
T ss_dssp             GSCSCCCEEECCSS-CCSCCCSTTTC-SCC-CCEEECCSS
T ss_pred             cCCcCCCEEeCCCC-ccceeCHHHcc-cCC-ceEEEeeCC
Confidence            67788888888887 66666654432 122 444444443

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}

Probab=97.71  E-value=0.0023  Score=60.07  Aligned_cols=125  Identities=14%  Similarity=0.138  Sum_probs=70.3

Q ss_pred             cccccCcccEEEeCCcccccccccCCCCccccccccceEEEEecccccccccccC-ccccCccCEEEEcccCCcccccch
Q 036454          215 HAEGIAQIKSLKLKKLWLIEEHLWNPDSKLDSFLQNLEFLEVKKCALSLISLVPS-SASFRNLTVLKVCNCWQLISLVTP  293 (410)
Q Consensus       215 ~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~l~~l~~~-~~~~~~L~~L~l~~c~~l~~~~~~  293 (410)
                      .+.++.+|+.+.+..  .+ ..+   +...+..+++|+.+.+..   .++.+... ...+.+|+.+.|..  +++.+.. 
T Consensus       260 aF~~c~~L~~i~lp~--~~-~~I---~~~aF~~c~~L~~i~l~~---~i~~I~~~aF~~c~~L~~i~lp~--~v~~I~~-  327 (394)
T 4gt6_A          260 AFDSCAYLASVKMPD--SV-VSI---GTGAFMNCPALQDIEFSS---RITELPESVFAGCISLKSIDIPE--GITQILD-  327 (394)
T ss_dssp             TTTTCSSCCEEECCT--TC-CEE---CTTTTTTCTTCCEEECCT---TCCEECTTTTTTCTTCCEEECCT--TCCEECT-
T ss_pred             eeeecccccEEeccc--cc-cee---cCcccccccccccccCCC---cccccCceeecCCCCcCEEEeCC--cccEehH-
Confidence            356677888887754  11 222   223466778888888864   45555443 34567888888853  3555532 


Q ss_pred             hhhhcCCCccEEEeccCcccchhc-cccCCCCccccccccceeecCcCcccceecCCCcccCCCCccEEEEe
Q 036454          294 QTAKTLVQLRELRVSECNRLEEIV-ANDGDADDEIVFSKLKWLFLESSESITSFCSGNYAFSFPSLEDLIVE  364 (410)
Q Consensus       294 ~~~~~l~~L~~L~l~~c~~l~~~~-~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~l~  364 (410)
                      .....+.+|+++.+-.  .++.+. ..+.+      +++|+++.+.+...  ...   .+..+.+|+.+.+.
T Consensus       328 ~aF~~C~~L~~i~ip~--sv~~I~~~aF~~------C~~L~~i~~~~~~~--~~~---~~~~~~~L~~i~i~  386 (394)
T 4gt6_A          328 DAFAGCEQLERIAIPS--SVTKIPESAFSN------CTALNNIEYSGSRS--QWN---AISTDSGLQNLPVA  386 (394)
T ss_dssp             TTTTTCTTCCEEEECT--TCCBCCGGGGTT------CTTCCEEEESSCHH--HHH---TCBCCCCC------
T ss_pred             hHhhCCCCCCEEEECc--ccCEEhHhHhhC------CCCCCEEEECCcee--ehh---hhhccCCCCEEEeC
Confidence            3456778888888853  233332 22334      78888888877421  111   22357778777664

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=97.69  E-value=5.7e-05  Score=69.75  Aligned_cols=59  Identities=12%  Similarity=0.135  Sum_probs=32.0

Q ss_pred             cccccEEEEEe-CCCccchhhhhhhcccCceEEEeccccccccccchhhccccccCcccEEEeCC
Q 036454          166 FHKLKILHFIS-DGSDFFQVGLLQNIHNLEKLVLSTCEYKKIFSCEEVEEHAEGIAQIKSLKLKK  229 (410)
Q Consensus       166 l~~L~~L~l~~-~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~  229 (410)
                      +.+|+.|+++. +.+..++...+.++++|+.|++++|.+..+.+     ..+..+++|+.|+|++
T Consensus        30 ~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~-----~~~~~l~~L~~L~l~~   89 (347)
T 2ifg_A           30 AENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAP-----DAFHFTPRLSRLNLSF   89 (347)
T ss_dssp             CSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECT-----TGGGSCSCCCEEECCS
T ss_pred             CCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCH-----HHhcCCcCCCEEeCCC
Confidence            44566666643 55555555555556666666666655555433     1234455566666555

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}

Probab=97.53  E-value=0.018  Score=53.79  Aligned_cols=34  Identities=15%  Similarity=0.165  Sum_probs=15.3

Q ss_pred             ccccceeecCcCcccceecCCCcccCCCCccEEEEec
Q 036454          329 FSKLKWLFLESSESITSFCSGNYAFSFPSLEDLIVEN  365 (410)
Q Consensus       329 ~~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~l~~  365 (410)
                      +++|+++.|-.  .++.+... -+.+|++|+.+++.+
T Consensus       333 C~~L~~i~ip~--sv~~I~~~-aF~~C~~L~~i~~~~  366 (394)
T 4gt6_A          333 CEQLERIAIPS--SVTKIPES-AFSNCTALNNIEYSG  366 (394)
T ss_dssp             CTTCCEEEECT--TCCBCCGG-GGTTCTTCCEEEESS
T ss_pred             CCCCCEEEECc--ccCEEhHh-HhhCCCCCCEEEECC
Confidence            45555555532  23333332 233455555555543

>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}

Probab=96.97  E-value=0.074  Score=49.25  Aligned_cols=42  Identities=14%  Similarity=0.180  Sum_probs=22.3

Q ss_pred             ccCcccEEEeccCcCccccCchhHHhhhhccceEeeccccCcceEec
Q 036454           45 IFRNLVVVRIFDCQSLKNIFPTSIARSLLRLETLSIKDCGSVEEIVA   91 (410)
Q Consensus        45 ~l~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~   91 (410)
                      ...+|+.+.+-.  .++.++...+ .++.+|+++++..  +++.++.
T Consensus        44 ~~~~i~~v~ip~--~vt~Ig~~aF-~~C~~L~~I~lp~--~v~~Ig~   85 (379)
T 4h09_A           44 DRDRISEVRVNS--GITSIGEANF-NSCYNMTKVTVAS--TVTSIGD   85 (379)
T ss_dssp             GGGGCSEEEECT--TEEEECTTTT-TTCTTCCEEEECT--TCCEECT
T ss_pred             cccCCEEEEeCC--CccChHHHHh-hCCCCCCEEEeCC--cceEech
Confidence            345666666642  3444544333 4666666666643  2555554

>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}

Probab=96.97  E-value=0.093  Score=48.58  Aligned_cols=281  Identities=14%  Similarity=0.084  Sum_probs=146.1

Q ss_pred             cccCCcEEEecCccccccccccCCccccccCcccEEEeccCcCccccCchhHHhhhhccceEeeccccCcceEeccCCCC
Q 036454           17 AATQLRELHVFHLPKLTKLWNKDPQGKLIFRNLVVVRIFDCQSLKNIFPTSIARSLLRLETLSIKDCGSVEEIVANDGRG   96 (410)
Q Consensus        17 ~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~   96 (410)
                      ...+|+.+.+.+  +++.+-   ..-+..+.+|+.+.+-.  .++.+....+ .++ +|+.+.+.  .+++.++.     
T Consensus        44 ~~~~i~~v~ip~--~vt~Ig---~~aF~~C~~L~~I~lp~--~v~~Ig~~aF-~~c-~l~~i~~~--~~l~~I~~-----  107 (379)
T 4h09_A           44 DRDRISEVRVNS--GITSIG---EANFNSCYNMTKVTVAS--TVTSIGDGAF-ADT-KLQSYTGM--ERVKKFGD-----  107 (379)
T ss_dssp             GGGGCSEEEECT--TEEEEC---TTTTTTCTTCCEEEECT--TCCEECTTTT-TTC-CCCEEEEC--TTCCEECT-----
T ss_pred             cccCCEEEEeCC--CccChH---HHHhhCCCCCCEEEeCC--cceEechhhh-cCC-CCceEECC--ceeeEecc-----
Confidence            356788888864  344441   12245788899999853  3555655444 344 57766664  33666665     


Q ss_pred             CCCcccccCCCccEEeeccCCCccccccCcccCCCCCceEEEEccC---------CccccccEEEeeccCccccccc---
Q 036454           97 NDAATKFIFPSLTFLRLRDLPDLTTFYSGMHILECPELRKLEVNHV---------DVFANLEELTLSKCIFTTWRQA---  164 (410)
Q Consensus        97 ~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~~---------~~l~~L~~L~i~~~~~~~~~~~---  164 (410)
                          ......+|+.+.+...  +..+....+  ...+++.+.+...         .....++...+...........   
T Consensus       108 ----~aF~~~~L~~i~lp~~--~~~i~~~~F--~~~~l~~~~~~~~v~~i~~~~f~~~~~l~~~~~~~~~~~~~~~~~~~  179 (379)
T 4h09_A          108 ----YVFQGTDLDDFEFPGA--TTEIGNYIF--YNSSVKRIVIPKSVTTIKDGIGYKAENLEKIEVSSNNKNYVAENYVL  179 (379)
T ss_dssp             ----TTTTTCCCSEEECCTT--CCEECTTTT--TTCCCCEEEECTTCCEECSCTTTTCTTCCEEEECTTCSSEEEETTEE
T ss_pred             ----ceeccCCcccccCCCc--ccccccccc--ccceeeeeeccceeeccccchhcccccccccccccccceeeccccee
Confidence                2223346777777542  222222221  1123444433222         1123444444332221111000   


Q ss_pred             ------------ccccccEEEEEeCCCccchhhhhhhcccCceEEEeccccccccccchhhccccccCcccEEEeCCccc
Q 036454          165 ------------QFHKLKILHFISDGSDFFQVGLLQNIHNLEKLVLSTCEYKKIFSCEEVEEHAEGIAQIKSLKLKKLWL  232 (410)
Q Consensus       165 ------------~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~  232 (410)
                                  ....+..+.+. .............+.+|+.+.+... +..+..     ..+.++.+|+.+.+..  .
T Consensus       180 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~i~~~~f~~~~~l~~i~~~~~-~~~i~~-----~~f~~~~~L~~i~lp~--~  250 (379)
T 4h09_A          180 YNKNKTILESYPAAKTGTEFTIP-STVKTVTAYGFSYGKNLKKITITSG-VTTLGD-----GAFYGMKALDEIAIPK--N  250 (379)
T ss_dssp             EETTSSEEEECCTTCCCSEEECC-TTCCEECTTTTTTCSSCSEEECCTT-CCEECT-----TTTTTCSSCCEEEECT--T
T ss_pred             cccccceeccccccccccccccc-cceeEEeecccccccccceeeeccc-eeEEcc-----ccccCCccceEEEcCC--C
Confidence                        02233333331 1112222233456678888877543 222211     1355678888888854  2


Q ss_pred             ccccccCCCCccccccccceEEEEeccccccccccc-CccccCccCEEEEcccCCcccccchhhhhcCCCccEEEeccCc
Q 036454          233 IEEHLWNPDSKLDSFLQNLEFLEVKKCALSLISLVP-SSASFRNLTVLKVCNCWQLISLVTPQTAKTLVQLRELRVSECN  311 (410)
Q Consensus       233 l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~l~~l~~-~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~  311 (410)
                      + +.+   +...+..+.+|+.+.+..   .+..+.. ....+.+|+.+.+.+. .++.+.. .....+.+|+.+.+..  
T Consensus       251 v-~~I---~~~aF~~~~~l~~i~l~~---~i~~i~~~aF~~c~~L~~i~l~~~-~i~~I~~-~aF~~c~~L~~i~lp~--  319 (379)
T 4h09_A          251 V-TSI---GSFLLQNCTALKTLNFYA---KVKTVPYLLCSGCSNLTKVVMDNS-AIETLEP-RVFMDCVKLSSVTLPT--  319 (379)
T ss_dssp             C-CEE---CTTTTTTCTTCCEEEECC---CCSEECTTTTTTCTTCCEEEECCT-TCCEECT-TTTTTCTTCCEEECCT--
T ss_pred             c-cEe---Cccccceeehhccccccc---cceecccccccccccccccccccc-ccceehh-hhhcCCCCCCEEEcCc--
Confidence            3 333   233567788888888865   3444443 2356788999888543 3555543 3456778899988853  


Q ss_pred             ccchhcc-ccCCCCccccccccceeecCcCcccceecCC
Q 036454          312 RLEEIVA-NDGDADDEIVFSKLKWLFLESSESITSFCSG  349 (410)
Q Consensus       312 ~l~~~~~-~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~  349 (410)
                      .++.+.. .+.+      +++|+++.+-.  .++.+...
T Consensus       320 ~l~~I~~~aF~~------C~~L~~i~ip~--~v~~I~~~  350 (379)
T 4h09_A          320 ALKTIQVYAFKN------CKALSTISYPK--SITLIESG  350 (379)
T ss_dssp             TCCEECTTTTTT------CTTCCCCCCCT--TCCEECTT
T ss_pred             cccEEHHHHhhC------CCCCCEEEECC--ccCEEchh
Confidence            2444322 2334      78888888753  46666554

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=96.48  E-value=0.00094  Score=55.55  Aligned_cols=121  Identities=14%  Similarity=0.034  Sum_probs=58.4

Q ss_pred             hhhhhcccCceEEEecc-ccccccccchhhccccccCcccEEEeCCcccccccccCCCCccccccccceEEEEecccccc
Q 036454          185 GLLQNIHNLEKLVLSTC-EYKKIFSCEEVEEHAEGIAQIKSLKLKKLWLIEEHLWNPDSKLDSFLQNLEFLEVKKCALSL  263 (410)
Q Consensus       185 ~~l~~l~~L~~L~l~~~-~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~l  263 (410)
                      ..+...+.|++|++++| .+...... .........++|++|+|+++..-+... ..-...+...++|++|++++|.  +
T Consensus        30 ~~l~~~~~L~~L~L~~n~~i~~~g~~-~l~~~L~~~~~L~~L~Ls~n~i~~~g~-~~l~~~L~~n~~L~~L~L~~N~--i  105 (185)
T 1io0_A           30 RIQNNDPDLEEVNLNNIMNIPVPTLK-ACAEALKTNTYVKKFSIVGTRSNDPVA-FALAEMLKVNNTLKSLNVESNF--I  105 (185)
T ss_dssp             HHHTTCTTCCEEECTTCTTCCHHHHH-HHHHHHTTCCSCCEEECTTSCCCHHHH-HHHHHHHHHCSSCCEEECCSSC--C
T ss_pred             HHHhcCCCCCEEEecCCCCCCHHHHH-HHHHHHHhCCCcCEEECcCCCCChHHH-HHHHHHHHhCCCcCEEECcCCc--C
Confidence            34566777888888777 55432110 001122334677777777743210000 0001123344667777777763  3


Q ss_pred             cc-----cccCccccCccCEEEE--cccCCcccccc---hhhhhcCCCccEEEeccC
Q 036454          264 IS-----LVPSSASFRNLTVLKV--CNCWQLISLVT---PQTAKTLVQLRELRVSEC  310 (410)
Q Consensus       264 ~~-----l~~~~~~~~~L~~L~l--~~c~~l~~~~~---~~~~~~l~~L~~L~l~~c  310 (410)
                      .+     +...+...++|++|++  +++ .+..-..   ...+...++|++|++++|
T Consensus       106 ~~~g~~~l~~~L~~n~~L~~L~L~~~~N-~i~~~g~~~l~~~L~~n~~L~~L~L~~n  161 (185)
T 1io0_A          106 SGSGILALVEALQSNTSLIELRIDNQSQ-PLGNNVEMEIANMLEKNTTLLKFGYHFT  161 (185)
T ss_dssp             CHHHHHHHHHGGGGCSSCCEEECCCCSS-CCCHHHHHHHHHHHHHCSSCCEEECCCS
T ss_pred             CHHHHHHHHHHHHhCCCceEEEecCCCC-CCCHHHHHHHHHHHHhCCCcCEEeccCC
Confidence            22     2233444556777777  433 3433221   122344566777777654

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=96.44  E-value=0.0018  Score=57.08  Aligned_cols=19  Identities=32%  Similarity=0.371  Sum_probs=10.7

Q ss_pred             hhcccCceEEEeccccccc
Q 036454          188 QNIHNLEKLVLSTCEYKKI  206 (410)
Q Consensus       188 ~~l~~L~~L~l~~~~~~~~  206 (410)
                      .++++|+.|++++|.+..+
T Consensus       167 ~~l~~L~~L~Ls~N~l~~l  185 (267)
T 3rw6_A          167 ENIPELLSLNLSNNRLYRL  185 (267)
T ss_dssp             HHCTTCCEEECTTSCCCCC
T ss_pred             hhCCCCCEEECCCCCCCCC
Confidence            3456666666666655443

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=96.28  E-value=0.0027  Score=52.74  Aligned_cols=43  Identities=7%  Similarity=-0.050  Sum_probs=21.3

Q ss_pred             hhhhccceEeeccccCcceEeccCCCCCCCcccccCCCccEEeeccC
Q 036454           70 RSLLRLETLSIKDCGSVEEIVANDGRGNDAATKFIFPSLTFLRLRDL  116 (410)
Q Consensus        70 ~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~  116 (410)
                      ...++|++|++++|..+.......    ....+...++|++|+|+++
T Consensus        33 ~~~~~L~~L~L~~n~~i~~~g~~~----l~~~L~~~~~L~~L~Ls~n   75 (185)
T 1io0_A           33 NNDPDLEEVNLNNIMNIPVPTLKA----CAEALKTNTYVKKFSIVGT   75 (185)
T ss_dssp             TTCTTCCEEECTTCTTCCHHHHHH----HHHHHTTCCSCCEEECTTS
T ss_pred             hcCCCCCEEEecCCCCCCHHHHHH----HHHHHHhCCCcCEEECcCC
Confidence            456677777777662243211100    0002333456777777666

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=96.23  E-value=0.0029  Score=55.67  Aligned_cols=82  Identities=17%  Similarity=0.108  Sum_probs=52.6

Q ss_pred             ccCcccEEEeccCcCccccCch-hHHhhhhccceEeeccccCcceEeccCCCCCCCcccccCC--CccEEeeccCCCccc
Q 036454           45 IFRNLVVVRIFDCQSLKNIFPT-SIARSLLRLETLSIKDCGSVEEIVANDGRGNDAATKFIFP--SLTFLRLRDLPDLTT  121 (410)
Q Consensus        45 ~l~~L~~L~l~~~~~l~~~~~~-~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~l~--~L~~L~l~~~~~l~~  121 (410)
                      .+++|++|+|+++ .+..+.+. ..+..+++|++|+++++. +..+.          .+..+.  +|+.|++++++--..
T Consensus       168 ~l~~L~~L~Ls~N-~l~~l~~l~~~~~~l~~L~~L~Ls~N~-i~~~~----------~l~~l~~l~L~~L~L~~Npl~~~  235 (267)
T 3rw6_A          168 NIPELLSLNLSNN-RLYRLDDMSSIVQKAPNLKILNLSGNE-LKSER----------ELDKIKGLKLEELWLDGNSLCDT  235 (267)
T ss_dssp             HCTTCCEEECTTS-CCCCCGGGTTHHHHSTTCCEEECTTSC-CCSGG----------GGGGGTTSCCSEEECTTSTTGGG
T ss_pred             hCCCCCEEECCCC-CCCCCccchhHHhhCCCCCEEECCCCc-cCCch----------hhhhcccCCcceEEccCCcCccc
Confidence            6889999999988 55554332 233688999999998876 65542          233333  899999998864433


Q ss_pred             cccC-----cccCCCCCceEEE
Q 036454          122 FYSG-----MHILECPELRKLE  138 (410)
Q Consensus       122 ~~~~-----~~~~~~~~L~~L~  138 (410)
                      ++..     .+...+|+|+.|+
T Consensus       236 ~~~~~~y~~~il~~~P~L~~LD  257 (267)
T 3rw6_A          236 FRDQSTYISAIRERFPKLLRLD  257 (267)
T ss_dssp             CSSHHHHHHHHHHHCTTCCEES
T ss_pred             cCcchhHHHHHHHHCcccCeEC
Confidence            3210     1123577777765

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*

Probab=86.16  E-value=0.63  Score=35.66  Aligned_cols=34  Identities=18%  Similarity=0.195  Sum_probs=17.1

Q ss_pred             cccEEEEEeCCCccchhhhhhhcccCceEEEecc
Q 036454          168 KLKILHFISDGSDFFQVGLLQNIHNLEKLVLSTC  201 (410)
Q Consensus       168 ~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~  201 (410)
                      +|+.|+|+.+.+..++...+..+++|+.|.+.+|
T Consensus        32 ~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N   65 (130)
T 3rfe_A           32 DTTELVLTGNNLTALPPGLLDALPALRTAHLGAN   65 (130)
T ss_dssp             TCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSS
T ss_pred             CCCEEECCCCcCCccChhhhhhccccCEEEecCC
Confidence            3444444334444444445555566666666654

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*

Probab=80.91  E-value=2.5  Score=32.19  Aligned_cols=34  Identities=15%  Similarity=0.116  Sum_probs=15.3

Q ss_pred             cccEEEeccCcCccccCchhHHhhhhccceEeeccc
Q 036454           48 NLVVVRIFDCQSLKNIFPTSIARSLLRLETLSIKDC   83 (410)
Q Consensus        48 ~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~   83 (410)
                      +|++|+|+++ .++.+++.. +..+++|++|+++++
T Consensus        32 ~l~~L~Ls~N-~l~~l~~~~-f~~l~~L~~L~L~~N   65 (130)
T 3rfe_A           32 DTTELVLTGN-NLTALPPGL-LDALPALRTAHLGAN   65 (130)
T ss_dssp             TCSEEECTTS-CCSSCCTTT-GGGCTTCCEEECCSS
T ss_pred             CCCEEECCCC-cCCccChhh-hhhccccCEEEecCC
Confidence            4555555544 344443322 234455555555443

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	410
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	99.86
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	99.78
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	99.67
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	99.66
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	99.64
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	99.59
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	99.59
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	99.58
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	99.57
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	99.55
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	99.54
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	99.53
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	99.52
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	99.5
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	99.49
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.46
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	99.44
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.41
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.39
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.38
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	99.32
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	99.31
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	99.09
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	98.98
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	98.96
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	98.93
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	98.9
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	98.88
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	98.65
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	98.65
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	98.63
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	98.62
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	98.5
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	98.46
d2ifga3	156	High affinity nerve growth factor receptor, N-term	98.24
d2ifga3	156	High affinity nerve growth factor receptor, N-term	98.18
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	96.16
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	95.92
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	95.57
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	94.55
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	94.09
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	92.4

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.86  E-value=3.9e-20  Score=173.04  Aligned_cols=315  Identities=18%  Similarity=0.218  Sum_probs=212.9

Q ss_pred             cccccccCCcEEEecCccccccccccCCccccccCcccEEEeccCcCccccCchhHHhhhhccceEeeccccCcceEecc
Q 036454           13 THSGAATQLRELHVFHLPKLTKLWNKDPQGKLIFRNLVVVRIFDCQSLKNIFPTSIARSLLRLETLSIKDCGSVEEIVAN   92 (410)
Q Consensus        13 ~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~   92 (410)
                      .....+.+|++|++.++ +++.     .++++++++|++|+++++ .++++++.   +++++|++|+++++. +..++  
T Consensus        38 ~~~~~l~~l~~L~l~~~-~I~~-----l~gl~~L~nL~~L~Ls~N-~l~~l~~l---~~L~~L~~L~L~~n~-i~~i~--  104 (384)
T d2omza2          38 VSQTDLDQVTTLQADRL-GIKS-----IDGVEYLNNLTQINFSNN-QLTDITPL---KNLTKLVDILMNNNQ-IADIT--  104 (384)
T ss_dssp             ECHHHHTTCCEEECCSS-CCCC-----CTTGGGCTTCCEEECCSS-CCCCCGGG---TTCTTCCEEECCSSC-CCCCG--
T ss_pred             cCHHHhCCCCEEECCCC-CCCC-----ccccccCCCCCEEeCcCC-cCCCCccc---cCCcccccccccccc-ccccc--
Confidence            34556889999999998 4443     367889999999999999 67777654   789999999999987 66654  


Q ss_pred             CCCCCCCcccccCCCccEEeeccCCCccccccCcccCCCCCceEEEEccC-----------------------------C
Q 036454           93 DGRGNDAATKFIFPSLTFLRLRDLPDLTTFYSGMHILECPELRKLEVNHV-----------------------------D  143 (410)
Q Consensus        93 ~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~~-----------------------------~  143 (410)
                              .+..+++|+.|+++++ .........   ....+.......+                             .
T Consensus       105 --------~l~~l~~L~~L~~~~~-~~~~~~~~~---~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  172 (384)
T d2omza2         105 --------PLANLTNLTGLTLFNN-QITDIDPLK---NLTNLNRLELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLA  172 (384)
T ss_dssp             --------GGTTCTTCCEEECCSS-CCCCCGGGT---TCTTCSEEEEEEEEECCCGGGTTCTTCSEEEEEESCCCCGGGT
T ss_pred             --------cccccccccccccccc-ccccccccc---ccccccccccccccccccccccccccccccccccccchhhhhc
Confidence                    4677899999999876 333333221   2233333333222                             0


Q ss_pred             ccccccEEEeeccCcccccccc-cccccEEEEEeCCCccchhhhhhhcccCceEEEeccccccccccchhhccccccCcc
Q 036454          144 VFANLEELTLSKCIFTTWRQAQ-FHKLKILHFISDGSDFFQVGLLQNIHNLEKLVLSTCEYKKIFSCEEVEEHAEGIAQI  222 (410)
Q Consensus       144 ~l~~L~~L~i~~~~~~~~~~~~-l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~L  222 (410)
                      ..+.........+......... +++++.++++.......+.  ....++|+.|+++++.+..+..       +..+++|
T Consensus       173 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~l~~n~i~~~~~--~~~~~~L~~L~l~~n~l~~~~~-------l~~l~~L  243 (384)
T d2omza2         173 NLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLKDIGT-------LASLTNL  243 (384)
T ss_dssp             TCTTCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG-------GGGCTTC
T ss_pred             cccccccccccccccccccccccccccceeeccCCccCCCCc--ccccCCCCEEECCCCCCCCcch-------hhccccc
Confidence            0111111112222221111111 7788888886555555442  4567889999999888766543       5677899


Q ss_pred             cEEEeCCcccccccccCCCCccccccccceEEEEecccccccccccCccccCccCEEEEcccCCcccccchhhhhcCCCc
Q 036454          223 KSLKLKKLWLIEEHLWNPDSKLDSFLQNLEFLEVKKCALSLISLVPSSASFRNLTVLKVCNCWQLISLVTPQTAKTLVQL  302 (410)
Q Consensus       223 ~~L~l~~c~~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~l~~l~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L  302 (410)
                      +.|+++++. + ..     ...+..+++|++|+++++  .+..+++ ...++.++.+.+..+ .+..+.   ....++++
T Consensus       244 ~~L~l~~n~-l-~~-----~~~~~~~~~L~~L~l~~~--~l~~~~~-~~~~~~l~~l~~~~n-~l~~~~---~~~~~~~l  309 (384)
T d2omza2         244 TDLDLANNQ-I-SN-----LAPLSGLTKLTELKLGAN--QISNISP-LAGLTALTNLELNEN-QLEDIS---PISNLKNL  309 (384)
T ss_dssp             SEEECCSSC-C-CC-----CGGGTTCTTCSEEECCSS--CCCCCGG-GTTCTTCSEEECCSS-CCSCCG---GGGGCTTC
T ss_pred             chhccccCc-c-CC-----CCcccccccCCEeeccCc--ccCCCCc-ccccccccccccccc-cccccc---ccchhccc
Confidence            999998853 2 11     234667889999999888  4555543 556778888888665 355442   35788899


Q ss_pred             cEEEeccCcccchhccccCCCCccccccccceeecCcCcccceecCCCcccCCCCccEEEEecCCCCcccCCCCCCCCCc
Q 036454          303 RELRVSECNRLEEIVANDGDADDEIVFSKLKWLFLESSESITSFCSGNYAFSFPSLEDLIVENCPKLNTFSAGVLKTPRL  382 (410)
Q Consensus       303 ~~L~l~~c~~l~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~L  382 (410)
                      +.|+++++ .+++++ .+..      +++|++|++++| .+++++.   ...+++|++|++++| .++.++. +..+++|
T Consensus       310 ~~L~ls~n-~l~~l~-~l~~------l~~L~~L~L~~n-~l~~l~~---l~~l~~L~~L~l~~N-~l~~l~~-l~~l~~L  375 (384)
T d2omza2         310 TYLTLYFN-NISDIS-PVSS------LTKLQRLFFANN-KVSDVSS---LANLTNINWLSAGHN-QISDLTP-LANLTRI  375 (384)
T ss_dssp             SEEECCSS-CCSCCG-GGGG------CTTCCEEECCSS-CCCCCGG---GGGCTTCCEEECCSS-CCCBCGG-GTTCTTC
T ss_pred             CeEECCCC-CCCCCc-cccc------CCCCCEEECCCC-CCCCChh---HcCCCCCCEEECCCC-cCCCChh-hccCCCC
Confidence            99999986 555553 2455      899999999997 5776642   346999999999876 6777664 5568999


Q ss_pred             ceeEecc
Q 036454          383 QAVQNWE  389 (410)
Q Consensus       383 ~~l~~~~  389 (410)
                      +.|++++
T Consensus       376 ~~L~L~~  382 (384)
T d2omza2         376 TQLGLND  382 (384)
T ss_dssp             SEEECCC
T ss_pred             CEeeCCC
Confidence            9999873

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.78  E-value=1.4e-17  Score=155.46  Aligned_cols=307  Identities=15%  Similarity=0.208  Sum_probs=206.7

Q ss_pred             ccccccCccc-cccccccCCcEEEecCccccccccccCCccccccCcccEEEeccCcCccccCchhHHhhhhccceEeec
Q 036454            3 FDLQEVNSEE-THSGAATQLRELHVFHLPKLTKLWNKDPQGKLIFRNLVVVRIFDCQSLKNIFPTSIARSLLRLETLSIK   81 (410)
Q Consensus         3 ~~~~~~~~~~-~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~   81 (410)
                      ++++...+.. ..++.+++|++|+++++ .++.+     ..+..+++|++|++++| .+..+++.   +++++|+.|+++
T Consensus        49 L~l~~~~I~~l~gl~~L~nL~~L~Ls~N-~l~~l-----~~l~~L~~L~~L~L~~n-~i~~i~~l---~~l~~L~~L~~~  118 (384)
T d2omza2          49 LQADRLGIKSIDGVEYLNNLTQINFSNN-QLTDI-----TPLKNLTKLVDILMNNN-QIADITPL---ANLTNLTGLTLF  118 (384)
T ss_dssp             EECCSSCCCCCTTGGGCTTCCEEECCSS-CCCCC-----GGGTTCTTCCEEECCSS-CCCCCGGG---TTCTTCCEEECC
T ss_pred             EECCCCCCCCccccccCCCCCEEeCcCC-cCCCC-----ccccCCccccccccccc-cccccccc---cccccccccccc
Confidence            3444444433 24778999999999998 55554     23778999999999999 56656554   789999999998


Q ss_pred             cccCcceEeccCCCCCCCcccccCCCccEEeeccC-----CC--------ccc-----cccCcccCCCCCceEEEEccC-
Q 036454           82 DCGSVEEIVANDGRGNDAATKFIFPSLTFLRLRDL-----PD--------LTT-----FYSGMHILECPELRKLEVNHV-  142 (410)
Q Consensus        82 ~~~~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~-----~~--------l~~-----~~~~~~~~~~~~L~~L~l~~~-  142 (410)
                      ++. +..++...          ....+.......+     ..        ...     ...... .............+ 
T Consensus       119 ~~~-~~~~~~~~----------~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~  186 (384)
T d2omza2         119 NNQ-ITDIDPLK----------NLTNLNRLELSSNTISDISALSGLTSLQQLSFGNQVTDLKPL-ANLTTLERLDISSNK  186 (384)
T ss_dssp             SSC-CCCCGGGT----------TCTTCSEEEEEEEEECCCGGGTTCTTCSEEEEEESCCCCGGG-TTCTTCCEEECCSSC
T ss_pred             ccc-cccccccc----------ccccccccccccccccccccccccccccccccccccchhhhh-ccccccccccccccc
Confidence            765 44433211          1111222211110     00        000     000000 01122222222222 


Q ss_pred             -------CccccccEEEeeccCcccccccc-cccccEEEEEeCCCccchhhhhhhcccCceEEEeccccccccccchhhc
Q 036454          143 -------DVFANLEELTLSKCIFTTWRQAQ-FHKLKILHFISDGSDFFQVGLLQNIHNLEKLVLSTCEYKKIFSCEEVEE  214 (410)
Q Consensus       143 -------~~l~~L~~L~i~~~~~~~~~~~~-l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~  214 (410)
                             ..+++++.+.++++......+.. .++|+.|++........+  .+..+++|+.|+++++.+..+..      
T Consensus       187 ~~~~~~~~~l~~~~~l~l~~n~i~~~~~~~~~~~L~~L~l~~n~l~~~~--~l~~l~~L~~L~l~~n~l~~~~~------  258 (384)
T d2omza2         187 VSDISVLAKLTNLESLIATNNQISDITPLGILTNLDELSLNGNQLKDIG--TLASLTNLTDLDLANNQISNLAP------  258 (384)
T ss_dssp             CCCCGGGGGCTTCSEEECCSSCCCCCGGGGGCTTCCEEECCSSCCCCCG--GGGGCTTCSEEECCSSCCCCCGG------
T ss_pred             cccccccccccccceeeccCCccCCCCcccccCCCCEEECCCCCCCCcc--hhhcccccchhccccCccCCCCc------
Confidence                   44578888888888877776655 889999999666666654  46788999999999998777654      


Q ss_pred             cccccCcccEEEeCCcccccccccCCCCccccccccceEEEEecccccccccccCccccCccCEEEEcccCCcccccchh
Q 036454          215 HAEGIAQIKSLKLKKLWLIEEHLWNPDSKLDSFLQNLEFLEVKKCALSLISLVPSSASFRNLTVLKVCNCWQLISLVTPQ  294 (410)
Q Consensus       215 ~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~l~~l~~~~~~~~~L~~L~l~~c~~l~~~~~~~  294 (410)
                       +..+++|++|+++++.-.       ....+..++.++.+.+..|  .++.+. ....+++++.|+++++ ++..++   
T Consensus       259 -~~~~~~L~~L~l~~~~l~-------~~~~~~~~~~l~~l~~~~n--~l~~~~-~~~~~~~l~~L~ls~n-~l~~l~---  323 (384)
T d2omza2         259 -LSGLTKLTELKLGANQIS-------NISPLAGLTALTNLELNEN--QLEDIS-PISNLKNLTYLTLYFN-NISDIS---  323 (384)
T ss_dssp             -GTTCTTCSEEECCSSCCC-------CCGGGTTCTTCSEEECCSS--CCSCCG-GGGGCTTCSEEECCSS-CCSCCG---
T ss_pred             -ccccccCCEeeccCcccC-------CCCcccccccccccccccc--cccccc-ccchhcccCeEECCCC-CCCCCc---
Confidence             667899999999874322       1234667889999999988  455543 3677899999999877 576664   


Q ss_pred             hhhcCCCccEEEeccCcccchhccccCCCCccccccccceeecCcCcccceecCCCcccCCCCccEEEEecC
Q 036454          295 TAKTLVQLRELRVSECNRLEEIVANDGDADDEIVFSKLKWLFLESSESITSFCSGNYAFSFPSLEDLIVENC  366 (410)
Q Consensus       295 ~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~l~~c  366 (410)
                      ....+++|++|++++| .++.++ .++.      +++|++|+++++ +++++..   ..++++|++|++++.
T Consensus       324 ~l~~l~~L~~L~L~~n-~l~~l~-~l~~------l~~L~~L~l~~N-~l~~l~~---l~~l~~L~~L~L~~N  383 (384)
T d2omza2         324 PVSSLTKLQRLFFANN-KVSDVS-SLAN------LTNINWLSAGHN-QISDLTP---LANLTRITQLGLNDQ  383 (384)
T ss_dssp             GGGGCTTCCEEECCSS-CCCCCG-GGGG------CTTCCEEECCSS-CCCBCGG---GTTCTTCSEEECCCE
T ss_pred             ccccCCCCCEEECCCC-CCCCCh-hHcC------CCCCCEEECCCC-cCCCChh---hccCCCCCEeeCCCC
Confidence            3578999999999997 566654 4666      899999999986 5777653   346999999998753

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.67  E-value=1.5e-15  Score=136.99  Aligned_cols=129  Identities=13%  Similarity=0.132  Sum_probs=83.2

Q ss_pred             cccccEEEEEeCCCccchhhhhhhcccCceEEEeccccccccccchhhccccccCcccEEEeCCcccccccccCCCCccc
Q 036454          166 FHKLKILHFISDGSDFFQVGLLQNIHNLEKLVLSTCEYKKIFSCEEVEEHAEGIAQIKSLKLKKLWLIEEHLWNPDSKLD  245 (410)
Q Consensus       166 l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~  245 (410)
                      +++|+.+++.+.....++..   .+++|+.|+++++.......     ..+.+++.++.|.++++.-.  .+   ....+
T Consensus       149 l~~L~~l~l~~n~l~~l~~~---~~~~L~~L~l~~n~~~~~~~-----~~~~~~~~l~~L~~s~n~l~--~~---~~~~~  215 (305)
T d1xkua_         149 MKKLSYIRIADTNITTIPQG---LPPSLTELHLDGNKITKVDA-----ASLKGLNNLAKLGLSFNSIS--AV---DNGSL  215 (305)
T ss_dssp             CTTCCEEECCSSCCCSCCSS---CCTTCSEEECTTSCCCEECT-----GGGTTCTTCCEEECCSSCCC--EE---CTTTG
T ss_pred             ccccCccccccCCccccCcc---cCCccCEEECCCCcCCCCCh-----hHhhcccccccccccccccc--cc---ccccc
Confidence            66777777755555555432   35788999998876555433     24566788888888874221  22   23456


Q ss_pred             cccccceEEEEecccccccccccCccccCccCEEEEcccCCcccccchh-----hhhcCCCccEEEeccC
Q 036454          246 SFLQNLEFLEVKKCALSLISLVPSSASFRNLTVLKVCNCWQLISLVTPQ-----TAKTLVQLRELRVSEC  310 (410)
Q Consensus       246 ~~~~~L~~L~l~~~~~~l~~l~~~~~~~~~L~~L~l~~c~~l~~~~~~~-----~~~~l~~L~~L~l~~c  310 (410)
                      ..+++|++|++++|  .++.++..+..+++|++|+++++ +++.++...     .....++|+.|++.++
T Consensus       216 ~~l~~L~~L~L~~N--~L~~lp~~l~~l~~L~~L~Ls~N-~i~~i~~~~f~~~~~~~~~~~L~~L~L~~N  282 (305)
T d1xkua_         216 ANTPHLRELHLNNN--KLVKVPGGLADHKYIQVVYLHNN-NISAIGSNDFCPPGYNTKKASYSGVSLFSN  282 (305)
T ss_dssp             GGSTTCCEEECCSS--CCSSCCTTTTTCSSCCEEECCSS-CCCCCCTTSSSCSSCCTTSCCCSEEECCSS
T ss_pred             cccccceeeecccc--cccccccccccccCCCEEECCCC-ccCccChhhccCcchhcccCCCCEEECCCC
Confidence            77788888888888  57777777777888888888776 466554211     1234456666666654

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.66  E-value=5.6e-15  Score=133.21  Aligned_cols=268  Identities=16%  Similarity=0.170  Sum_probs=150.8

Q ss_pred             cccEEEeccCcCccccCchhHHhhhhccceEeeccccCcceEeccCCCCCCCcccccCCCccEEeeccCCCccccccCcc
Q 036454           48 NLVVVRIFDCQSLKNIFPTSIARSLLRLETLSIKDCGSVEEIVANDGRGNDAATKFIFPSLTFLRLRDLPDLTTFYSGMH  127 (410)
Q Consensus        48 ~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~  127 (410)
                      ..+.++-++. .++.+|+ .+   .+++++|+++++. ++.++.        ..+..+++|+.|+++++ .+..++...+
T Consensus        11 ~~~~~~C~~~-~L~~lP~-~l---~~~l~~L~Ls~N~-i~~l~~--------~~f~~l~~L~~L~l~~n-~~~~i~~~~f   75 (305)
T d1xkua_          11 HLRVVQCSDL-GLEKVPK-DL---PPDTALLDLQNNK-ITEIKD--------GDFKNLKNLHTLILINN-KISKISPGAF   75 (305)
T ss_dssp             ETTEEECTTS-CCCSCCC-SC---CTTCCEEECCSSC-CCCBCT--------TTTTTCTTCCEEECCSS-CCCCBCTTTT
T ss_pred             cCCEEEecCC-CCCccCC-CC---CCCCCEEECcCCc-CCCcCh--------hHhhccccccccccccc-cccccchhhh
Confidence            5556654433 4677754 33   3789999999986 888875        14567899999999998 4445544333


Q ss_pred             cCCCCCceEEEEccCCccccccEEEeeccCcccccccccccccEEEEEeCCCccchhhhhhhcccCceEEEecccccccc
Q 036454          128 ILECPELRKLEVNHVDVFANLEELTLSKCIFTTWRQAQFHKLKILHFISDGSDFFQVGLLQNIHNLEKLVLSTCEYKKIF  207 (410)
Q Consensus       128 ~~~~~~L~~L~l~~~~~l~~L~~L~i~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~  207 (410)
                      . .+              +.|+.|++++|.+..++......++.|+.........+...+.....+..+....+......
T Consensus        76 ~-~l--------------~~L~~L~l~~n~l~~l~~~~~~~l~~L~~~~n~l~~l~~~~~~~~~~~~~l~~~~n~~~~~~  140 (305)
T d1xkua_          76 A-PL--------------VKLERLYLSKNQLKELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSG  140 (305)
T ss_dssp             T-TC--------------TTCCEEECCSSCCSBCCSSCCTTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGG
T ss_pred             h-CC--------------CccCEecccCCccCcCccchhhhhhhhhccccchhhhhhhhhhccccccccccccccccccC
Confidence            2 33              45555555555555444444556677766555555555555556666666666654322221


Q ss_pred             ccchhhccccccCcccEEEeCCcccccccccCCCCccccccccceEEEEecccccccccccCccccCccCEEEEcccCCc
Q 036454          208 SCEEVEEHAEGIAQIKSLKLKKLWLIEEHLWNPDSKLDSFLQNLEFLEVKKCALSLISLVPSSASFRNLTVLKVCNCWQL  287 (410)
Q Consensus       208 ~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~l~~l~~~~~~~~~L~~L~l~~c~~l  287 (410)
                      .   ....+..+++|+.+.+.++...  .+      ....+++|++|++.++. .....+..+..++.+++|+++++ .+
T Consensus       141 ~---~~~~~~~l~~L~~l~l~~n~l~--~l------~~~~~~~L~~L~l~~n~-~~~~~~~~~~~~~~l~~L~~s~n-~l  207 (305)
T d1xkua_         141 I---ENGAFQGMKKLSYIRIADTNIT--TI------PQGLPPSLTELHLDGNK-ITKVDAASLKGLNNLAKLGLSFN-SI  207 (305)
T ss_dssp             B---CTTGGGGCTTCCEEECCSSCCC--SC------CSSCCTTCSEEECTTSC-CCEECTGGGTTCTTCCEEECCSS-CC
T ss_pred             C---CccccccccccCccccccCCcc--cc------CcccCCccCEEECCCCc-CCCCChhHhhccccccccccccc-cc
Confidence            1   1112445566677776663221  11      11235666777776664 33333344455566666666655 35


Q ss_pred             ccccchhhhhcCCCccEEEeccCcccchhccccCCCCccccccccceeecCcCcccceecCCC-----cccCCCCccEEE
Q 036454          288 ISLVTPQTAKTLVQLRELRVSECNRLEEIVANDGDADDEIVFSKLKWLFLESSESITSFCSGN-----YAFSFPSLEDLI  362 (410)
Q Consensus       288 ~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~-----~~~~~~~L~~L~  362 (410)
                      ..++. .....+++|++|++++| .++.++.++..      +++|+.|+++++ +++.+....     .....++|+.|.
T Consensus       208 ~~~~~-~~~~~l~~L~~L~L~~N-~L~~lp~~l~~------l~~L~~L~Ls~N-~i~~i~~~~f~~~~~~~~~~~L~~L~  278 (305)
T d1xkua_         208 SAVDN-GSLANTPHLRELHLNNN-KLVKVPGGLAD------HKYIQVVYLHNN-NISAIGSNDFCPPGYNTKKASYSGVS  278 (305)
T ss_dssp             CEECT-TTGGGSTTCCEEECCSS-CCSSCCTTTTT------CSSCCEEECCSS-CCCCCCTTSSSCSSCCTTSCCCSEEE
T ss_pred             ccccc-ccccccccceeeecccc-ccccccccccc------ccCCCEEECCCC-ccCccChhhccCcchhcccCCCCEEE
Confidence            55432 34455666777776665 55555555555      666666666663 455553321     112244555555


Q ss_pred             EecCC
Q 036454          363 VENCP  367 (410)
Q Consensus       363 l~~c~  367 (410)
                      +.+++
T Consensus       279 L~~N~  283 (305)
T d1xkua_         279 LFSNP  283 (305)
T ss_dssp             CCSSS
T ss_pred             CCCCc
Confidence            55544

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=99.64  E-value=3.7e-14  Score=130.01  Aligned_cols=288  Identities=19%  Similarity=0.185  Sum_probs=173.6

Q ss_pred             cCCcEEEecCccccccccccCCccccccCcccEEEeccCcCccccCchhHHhhhhccceEeeccccCcceEeccCCCCCC
Q 036454           19 TQLRELHVFHLPKLTKLWNKDPQGKLIFRNLVVVRIFDCQSLKNIFPTSIARSLLRLETLSIKDCGSVEEIVANDGRGND   98 (410)
Q Consensus        19 ~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~   98 (410)
                      .++++|+++++ .++.+    |+   ..++|++|+++++ .++.+|.     ...+|++|+++++. ++.++.       
T Consensus        38 ~~l~~LdLs~~-~L~~l----p~---~~~~L~~L~Ls~N-~l~~lp~-----~~~~L~~L~l~~n~-l~~l~~-------   95 (353)
T d1jl5a_          38 RQAHELELNNL-GLSSL----PE---LPPHLESLVASCN-SLTELPE-----LPQSLKSLLVDNNN-LKALSD-------   95 (353)
T ss_dssp             HTCSEEECTTS-CCSCC----CS---CCTTCSEEECCSS-CCSSCCC-----CCTTCCEEECCSSC-CSCCCS-------
T ss_pred             cCCCEEEeCCC-CCCCC----CC---CCCCCCEEECCCC-CCccccc-----chhhhhhhhhhhcc-cchhhh-------
Confidence            57899999987 45554    54   4678999999877 6776643     35689999998875 655542       


Q ss_pred             CcccccCCCccEEeeccCCCccccccCcccCCCCCceEEEEccC------CccccccEEEeeccCcccccccc-cccccE
Q 036454           99 AATKFIFPSLTFLRLRDLPDLTTFYSGMHILECPELRKLEVNHV------DVFANLEELTLSKCIFTTWRQAQ-FHKLKI  171 (410)
Q Consensus        99 ~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~~------~~l~~L~~L~i~~~~~~~~~~~~-l~~L~~  171 (410)
                         +  .+.|++|+++++ .+..++..   ..+++|+.+++.++      ...+.+..+.+..+......... ++.++.
T Consensus        96 ---l--p~~L~~L~L~~n-~l~~lp~~---~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~l~~l~~l~~  166 (353)
T d1jl5a_          96 ---L--PPLLEYLGVSNN-QLEKLPEL---QNSSFLKIIDVDNNSLKKLPDLPPSLEFIAAGNNQLEELPELQNLPFLTA  166 (353)
T ss_dssp             ---C--CTTCCEEECCSS-CCSSCCCC---TTCTTCCEEECCSSCCSCCCCCCTTCCEEECCSSCCSSCCCCTTCTTCCE
T ss_pred             ---h--cccccccccccc-ccccccch---hhhccceeeccccccccccccccccccchhhcccccccccccccccccee
Confidence               1  146999999987 56666542   36789999998877      23345666666655544333222 677777


Q ss_pred             EEEEeCCCccchhhhhhhcccCceEEEeccccccccccchhhccccccCcccEEEeCCcccccccccCCCCccccccccc
Q 036454          172 LHFISDGSDFFQVGLLQNIHNLEKLVLSTCEYKKIFSCEEVEEHAEGIAQIKSLKLKKLWLIEEHLWNPDSKLDSFLQNL  251 (410)
Q Consensus       172 L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~L  251 (410)
                      +++........+.    .....+.+......+.....       ...++.|+.+.++.+...         ......+++
T Consensus       167 L~l~~n~~~~~~~----~~~~~~~l~~~~~~~~~~~~-------~~~l~~L~~l~l~~n~~~---------~~~~~~~~l  226 (353)
T d1jl5a_         167 IYADNNSLKKLPD----LPLSLESIVAGNNILEELPE-------LQNLPFLTTIYADNNLLK---------TLPDLPPSL  226 (353)
T ss_dssp             EECCSSCCSSCCC----CCTTCCEEECCSSCCSSCCC-------CTTCTTCCEEECCSSCCS---------SCCSCCTTC
T ss_pred             ccccccccccccc----cccccccccccccccccccc-------cccccccccccccccccc---------ccccccccc
Confidence            7774433333221    11233444444433333322       345677777777763221         112233455


Q ss_pred             eEEEEecccccccccccCccccCccC--------------------EEEEcccCCcccccchhhhhcCCCccEEEeccCc
Q 036454          252 EFLEVKKCALSLISLVPSSASFRNLT--------------------VLKVCNCWQLISLVTPQTAKTLVQLRELRVSECN  311 (410)
Q Consensus       252 ~~L~l~~~~~~l~~l~~~~~~~~~L~--------------------~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~  311 (410)
                      ..+.+.++.  +...+.   ..++++                    ..++..+ .+..++     ..+++|++|++++| 
T Consensus       227 ~~~~~~~~~--~~~~~~---~~~~l~~~~~~~~~~~~l~~l~~~~~~~~~~~~-~~~~~~-----~~~~~L~~L~Ls~N-  294 (353)
T d1jl5a_         227 EALNVRDNY--LTDLPE---LPQSLTFLDVSENIFSGLSELPPNLYYLNASSN-EIRSLC-----DLPPSLEELNVSNN-  294 (353)
T ss_dssp             CEEECCSSC--CSCCCC---CCTTCCEEECCSSCCSEESCCCTTCCEEECCSS-CCSEEC-----CCCTTCCEEECCSS-
T ss_pred             ccccccccc--cccccc---ccccccccccccccccccccccchhcccccccC-cccccc-----ccCCCCCEEECCCC-
Confidence            555555542  211111   111222                    2222111 222222     45688999999987 


Q ss_pred             ccchhccccCCCCccccccccceeecCcCcccceecCCCcccCCCCccEEEEecCCCCcccCCCCCCCCCcceeEec
Q 036454          312 RLEEIVANDGDADDEIVFSKLKWLFLESSESITSFCSGNYAFSFPSLEDLIVENCPKLNTFSAGVLKTPRLQAVQNW  388 (410)
Q Consensus       312 ~l~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~L~~l~~~  388 (410)
                      .++.++.   .      +++|++|+++++ .+++++.     .+++|++|++++|+ ++.+|..   +++|+.|++.
T Consensus       295 ~l~~lp~---~------~~~L~~L~L~~N-~L~~l~~-----~~~~L~~L~L~~N~-L~~lp~~---~~~L~~L~~~  352 (353)
T d1jl5a_         295 KLIELPA---L------PPRLERLIASFN-HLAEVPE-----LPQNLKQLHVEYNP-LREFPDI---PESVEDLRMN  352 (353)
T ss_dssp             CCSCCCC---C------CTTCCEEECCSS-CCSCCCC-----CCTTCCEEECCSSC-CSSCCCC---CTTCCEEECC
T ss_pred             ccCcccc---c------cCCCCEEECCCC-cCCcccc-----ccCCCCEEECcCCc-CCCCCcc---ccccCeeECc
Confidence            4666653   2      778999999876 5777653     26789999998886 8888874   5678888874

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=99.59  E-value=2.3e-15  Score=136.37  Aligned_cols=252  Identities=16%  Similarity=0.063  Sum_probs=144.4

Q ss_pred             CCcEEEecCccccccccccCCccccccCcccEEEeccCcCccccCchhHHhhhhccceEeeccccCcceEeccCCCCCCC
Q 036454           20 QLRELHVFHLPKLTKLWNKDPQGKLIFRNLVVVRIFDCQSLKNIFPTSIARSLLRLETLSIKDCGSVEEIVANDGRGNDA   99 (410)
Q Consensus        20 ~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~   99 (410)
                      +++.|++.++. +... ...|..++.+++|++|++++|..+....|..+ +++++|++|+++++. +..++.        
T Consensus        51 ~v~~L~L~~~~-l~g~-~~lp~~l~~L~~L~~L~Ls~~N~l~g~iP~~i-~~L~~L~~L~Ls~N~-l~~~~~--------  118 (313)
T d1ogqa_          51 RVNNLDLSGLN-LPKP-YPIPSSLANLPYLNFLYIGGINNLVGPIPPAI-AKLTQLHYLYITHTN-VSGAIP--------  118 (313)
T ss_dssp             CEEEEEEECCC-CSSC-EECCGGGGGCTTCSEEEEEEETTEESCCCGGG-GGCTTCSEEEEEEEC-CEEECC--------
T ss_pred             EEEEEECCCCC-CCCC-CCCChHHhcCcccccccccccccccccccccc-ccccccchhhhcccc-cccccc--------
Confidence            56667776652 2210 11256666777777777766434442223333 567777777777665 444432        


Q ss_pred             cccccCCCccEEeeccCCCccccccCcccCCCCCceEEEEccCCccccccEEEeeccCcccccccc---cccc-cEEEEE
Q 036454          100 ATKFIFPSLTFLRLRDLPDLTTFYSGMHILECPELRKLEVNHVDVFANLEELTLSKCIFTTWRQAQ---FHKL-KILHFI  175 (410)
Q Consensus       100 ~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~l~~L~~L~i~~~~~~~~~~~~---l~~L-~~L~l~  175 (410)
                      ..+..+++|+.++++.+.....++...                ..++.++.+++++|......+..   +..+ +.+++.
T Consensus       119 ~~~~~~~~L~~l~l~~N~~~~~~p~~l----------------~~l~~L~~l~l~~n~l~~~ip~~~~~l~~l~~~l~~~  182 (313)
T d1ogqa_         119 DFLSQIKTLVTLDFSYNALSGTLPPSI----------------SSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTIS  182 (313)
T ss_dssp             GGGGGCTTCCEEECCSSEEESCCCGGG----------------GGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECC
T ss_pred             ccccchhhhcccccccccccccCchhh----------------ccCcccceeeccccccccccccccccccccccccccc
Confidence            134556667777776653333222221                22356666666666665443332   3333 566654


Q ss_pred             eCCCccchhhhhhhcccCceEEEeccccccccccchhhccccccCcccEEEeCCcccccccccCCCCccccccccceEEE
Q 036454          176 SDGSDFFQVGLLQNIHNLEKLVLSTCEYKKIFSCEEVEEHAEGIAQIKSLKLKKLWLIEEHLWNPDSKLDSFLQNLEFLE  255 (410)
Q Consensus       176 ~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~L~~L~  255 (410)
                      ...........+.++.. ..+++..+......+     .....+++++.+++.++... ..     ...+..+++|++|+
T Consensus       183 ~n~l~~~~~~~~~~l~~-~~l~l~~~~~~~~~~-----~~~~~~~~l~~l~~~~~~l~-~~-----~~~~~~~~~L~~L~  250 (313)
T d1ogqa_         183 RNRLTGKIPPTFANLNL-AFVDLSRNMLEGDAS-----VLFGSDKNTQKIHLAKNSLA-FD-----LGKVGLSKNLNGLD  250 (313)
T ss_dssp             SSEEEEECCGGGGGCCC-SEEECCSSEEEECCG-----GGCCTTSCCSEEECCSSEEC-CB-----GGGCCCCTTCCEEE
T ss_pred             ccccccccccccccccc-ccccccccccccccc-----cccccccccccccccccccc-cc-----cccccccccccccc
Confidence            44444333344444433 356666654333322     13456788899988875332 11     23456678999999


Q ss_pred             EecccccccccccCccccCccCEEEEcccCCcc-cccchhhhhcCCCccEEEeccCcccchh
Q 036454          256 VKKCALSLISLVPSSASFRNLTVLKVCNCWQLI-SLVTPQTAKTLVQLRELRVSECNRLEEI  316 (410)
Q Consensus       256 l~~~~~~l~~l~~~~~~~~~L~~L~l~~c~~l~-~~~~~~~~~~l~~L~~L~l~~c~~l~~~  316 (410)
                      +++|. ....+|..++.+++|++|+++++ +++ .+|.   ...+++|+.+++.+++.+...
T Consensus       251 Ls~N~-l~g~iP~~l~~L~~L~~L~Ls~N-~l~g~iP~---~~~L~~L~~l~l~~N~~l~g~  307 (313)
T d1ogqa_         251 LRNNR-IYGTLPQGLTQLKFLHSLNVSFN-NLCGEIPQ---GGNLQRFDVSAYANNKCLCGS  307 (313)
T ss_dssp             CCSSC-CEECCCGGGGGCTTCCEEECCSS-EEEEECCC---STTGGGSCGGGTCSSSEEEST
T ss_pred             CccCe-ecccCChHHhCCCCCCEEECcCC-cccccCCC---cccCCCCCHHHhCCCccccCC
Confidence            99984 33368888888999999999876 355 4442   356778888888876555443

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=99.59  E-value=1.2e-14  Score=131.57  Aligned_cols=245  Identities=16%  Similarity=0.124  Sum_probs=119.7

Q ss_pred             cccEEEeccCcCcc--ccCchhHHhhhhccceEeeccccCcc-eEeccCCCCCCCcccccCCCccEEeeccCCCcccccc
Q 036454           48 NLVVVRIFDCQSLK--NIFPTSIARSLLRLETLSIKDCGSVE-EIVANDGRGNDAATKFIFPSLTFLRLRDLPDLTTFYS  124 (410)
Q Consensus        48 ~L~~L~l~~~~~l~--~~~~~~~~~~l~~L~~L~l~~~~~l~-~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~  124 (410)
                      +++.|++.++..-.  .+ |..+ +++++|++|+++++..+. .+|.         .+..+++|++|+++++ .+...+.
T Consensus        51 ~v~~L~L~~~~l~g~~~l-p~~l-~~L~~L~~L~Ls~~N~l~g~iP~---------~i~~L~~L~~L~Ls~N-~l~~~~~  118 (313)
T d1ogqa_          51 RVNNLDLSGLNLPKPYPI-PSSL-ANLPYLNFLYIGGINNLVGPIPP---------AIAKLTQLHYLYITHT-NVSGAIP  118 (313)
T ss_dssp             CEEEEEEECCCCSSCEEC-CGGG-GGCTTCSEEEEEEETTEESCCCG---------GGGGCTTCSEEEEEEE-CCEEECC
T ss_pred             EEEEEECCCCCCCCCCCC-ChHH-hcCcccccccccccccccccccc---------ccccccccchhhhccc-ccccccc
Confidence            57788888773222  23 2333 688888888888755454 5665         6777888888888877 3443333


Q ss_pred             CcccCCCCCceEEEEccCCccccccEEEeeccCcccccccc---cccccEEEEEeCCCc-cchhhhhhhcccC-ceEEEe
Q 036454          125 GMHILECPELRKLEVNHVDVFANLEELTLSKCIFTTWRQAQ---FHKLKILHFISDGSD-FFQVGLLQNIHNL-EKLVLS  199 (410)
Q Consensus       125 ~~~~~~~~~L~~L~l~~~~~l~~L~~L~i~~~~~~~~~~~~---l~~L~~L~l~~~~~~-~~~~~~l~~l~~L-~~L~l~  199 (410)
                      .... .+              +.|+.++++.|......+..   ++.++.+++...... .+| ..+..++++ +.+.++
T Consensus       119 ~~~~-~~--------------~~L~~l~l~~N~~~~~~p~~l~~l~~L~~l~l~~n~l~~~ip-~~~~~l~~l~~~l~~~  182 (313)
T d1ogqa_         119 DFLS-QI--------------KTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIP-DSYGSFSKLFTSMTIS  182 (313)
T ss_dssp             GGGG-GC--------------TTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECC-GGGGCCCTTCCEEECC
T ss_pred             cccc-ch--------------hhhcccccccccccccCchhhccCcccceeeccccccccccc-cccccccccccccccc
Confidence            2221 22              45555555555544433322   555566665333332 222 223344443 445555


Q ss_pred             ccccccccccchhhccccccCcccEEEeCCcccccccccCCCCccccccccceEEEEecccccccccccCccccCccCEE
Q 036454          200 TCEYKKIFSCEEVEEHAEGIAQIKSLKLKKLWLIEEHLWNPDSKLDSFLQNLEFLEVKKCALSLISLVPSSASFRNLTVL  279 (410)
Q Consensus       200 ~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~l~~l~~~~~~~~~L~~L  279 (410)
                      .+.+.....      ..........+++..+... ..    .+.....+++++.+++.++.  +...++..+.+++|++|
T Consensus       183 ~n~l~~~~~------~~~~~l~~~~l~l~~~~~~-~~----~~~~~~~~~~l~~l~~~~~~--l~~~~~~~~~~~~L~~L  249 (313)
T d1ogqa_         183 RNRLTGKIP------PTFANLNLAFVDLSRNMLE-GD----ASVLFGSDKNTQKIHLAKNS--LAFDLGKVGLSKNLNGL  249 (313)
T ss_dssp             SSEEEEECC------GGGGGCCCSEEECCSSEEE-EC----CGGGCCTTSCCSEEECCSSE--ECCBGGGCCCCTTCCEE
T ss_pred             ccccccccc------ccccccccccccccccccc-cc----cccccccccccccccccccc--ccccccccccccccccc
Confidence            554443322      0111122334444443222 11    12334445566666665553  33333344555566666


Q ss_pred             EEcccCCcc-cccchhhhhcCCCccEEEeccCcccchhccccCCCCccccccccceeecCcCccc
Q 036454          280 KVCNCWQLI-SLVTPQTAKTLVQLRELRVSECNRLEEIVANDGDADDEIVFSKLKWLFLESSESI  343 (410)
Q Consensus       280 ~l~~c~~l~-~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l  343 (410)
                      +++++. ++ .+|  ..+..+++|++|+++++.-...+| ..+.      +++|+.+.+.+.+.+
T Consensus       250 ~Ls~N~-l~g~iP--~~l~~L~~L~~L~Ls~N~l~g~iP-~~~~------L~~L~~l~l~~N~~l  304 (313)
T d1ogqa_         250 DLRNNR-IYGTLP--QGLTQLKFLHSLNVSFNNLCGEIP-QGGN------LQRFDVSAYANNKCL  304 (313)
T ss_dssp             ECCSSC-CEECCC--GGGGGCTTCCEEECCSSEEEEECC-CSTT------GGGSCGGGTCSSSEE
T ss_pred             cCccCe-ecccCC--hHHhCCCCCCEEECcCCcccccCC-Cccc------CCCCCHHHhCCCccc
Confidence            665542 33 333  234555666666665542212333 2233      555555555554433

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=99.58  E-value=3.2e-13  Score=123.53  Aligned_cols=297  Identities=18%  Similarity=0.090  Sum_probs=185.1

Q ss_pred             CcccEEEeccCcCccccCchhHHhhhhccceEeeccccCcceEeccCCCCCCCcccccCCCccEEeeccCCCccccccCc
Q 036454           47 RNLVVVRIFDCQSLKNIFPTSIARSLLRLETLSIKDCGSVEEIVANDGRGNDAATKFIFPSLTFLRLRDLPDLTTFYSGM  126 (410)
Q Consensus        47 ~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~  126 (410)
                      .++++|+++++ .++.+|.     ..++|++|+++++. ++.+|.         .   +.+|+.|+++++ .++.++.  
T Consensus        38 ~~l~~LdLs~~-~L~~lp~-----~~~~L~~L~Ls~N~-l~~lp~---------~---~~~L~~L~l~~n-~l~~l~~--   95 (353)
T d1jl5a_          38 RQAHELELNNL-GLSSLPE-----LPPHLESLVASCNS-LTELPE---------L---PQSLKSLLVDNN-NLKALSD--   95 (353)
T ss_dssp             HTCSEEECTTS-CCSCCCS-----CCTTCSEEECCSSC-CSSCCC---------C---CTTCCEEECCSS-CCSCCCS--
T ss_pred             cCCCEEEeCCC-CCCCCCC-----CCCCCCEEECCCCC-Cccccc---------c---hhhhhhhhhhhc-ccchhhh--
Confidence            47899999998 6777753     35899999999875 888875         2   468999999987 5554432  


Q ss_pred             ccCCCCCceEEEEccC--------CccccccEEEeeccCcccccccccccccEEEEEeCCCccchhhhhhhcccCceEEE
Q 036454          127 HILECPELRKLEVNHV--------DVFANLEELTLSKCIFTTWRQAQFHKLKILHFISDGSDFFQVGLLQNIHNLEKLVL  198 (410)
Q Consensus       127 ~~~~~~~L~~L~l~~~--------~~l~~L~~L~i~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l  198 (410)
                         -.+.|++|+++++        ..+++|+.++++++.....+.. ...+..+.+........  ..+..++.++.+.+
T Consensus        96 ---lp~~L~~L~L~~n~l~~lp~~~~l~~L~~L~l~~~~~~~~~~~-~~~l~~l~~~~~~~~~~--~~l~~l~~l~~L~l  169 (353)
T d1jl5a_          96 ---LPPLLEYLGVSNNQLEKLPELQNSSFLKIIDVDNNSLKKLPDL-PPSLEFIAAGNNQLEEL--PELQNLPFLTAIYA  169 (353)
T ss_dssp             ---CCTTCCEEECCSSCCSSCCCCTTCTTCCEEECCSSCCSCCCCC-CTTCCEEECCSSCCSSC--CCCTTCTTCCEEEC
T ss_pred             ---hccccccccccccccccccchhhhccceeeccccccccccccc-cccccchhhcccccccc--ccccccccceeccc
Confidence               1257999999888        4467889999988776554433 56677777633222221  23567889999999


Q ss_pred             eccccccccccchhhccccccCcccEEEeCCcccccccccCCCCccccccccceEEEEecccccccccccCccccCccCE
Q 036454          199 STCEYKKIFSCEEVEEHAEGIAQIKSLKLKKLWLIEEHLWNPDSKLDSFLQNLEFLEVKKCALSLISLVPSSASFRNLTV  278 (410)
Q Consensus       199 ~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~l~~l~~~~~~~~~L~~  278 (410)
                      ..+.......         .....+.+..... .+ ..     ......++.|+.++++++.  ...++   ....++..
T Consensus       170 ~~n~~~~~~~---------~~~~~~~l~~~~~-~~-~~-----~~~~~~l~~L~~l~l~~n~--~~~~~---~~~~~l~~  228 (353)
T d1jl5a_         170 DNNSLKKLPD---------LPLSLESIVAGNN-IL-EE-----LPELQNLPFLTTIYADNNL--LKTLP---DLPPSLEA  228 (353)
T ss_dssp             CSSCCSSCCC---------CCTTCCEEECCSS-CC-SS-----CCCCTTCTTCCEEECCSSC--CSSCC---SCCTTCCE
T ss_pred             cccccccccc---------ccccccccccccc-cc-cc-----ccccccccccccccccccc--ccccc---cccccccc
Confidence            8876544432         1233344444431 12 11     1235668899999999984  44343   34456777


Q ss_pred             EEEcccCCcccccchhhhhcCCCccEEEecc--CcccchhccccCCC--------CccccccccceeecCcCcccceecC
Q 036454          279 LKVCNCWQLISLVTPQTAKTLVQLRELRVSE--CNRLEEIVANDGDA--------DDEIVFSKLKWLFLESSESITSFCS  348 (410)
Q Consensus       279 L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~--c~~l~~~~~~~~~~--------~~~~~~~~L~~L~l~~c~~l~~~~~  348 (410)
                      +.+.++. +...+     ...+.+...++..  +..+...+......        .....+++|++|++++| +++.++.
T Consensus       229 ~~~~~~~-~~~~~-----~~~~~l~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N-~l~~lp~  301 (353)
T d1jl5a_         229 LNVRDNY-LTDLP-----ELPQSLTFLDVSENIFSGLSELPPNLYYLNASSNEIRSLCDLPPSLEELNVSNN-KLIELPA  301 (353)
T ss_dssp             EECCSSC-CSCCC-----CCCTTCCEEECCSSCCSEESCCCTTCCEEECCSSCCSEECCCCTTCCEEECCSS-CCSCCCC
T ss_pred             ccccccc-ccccc-----cccccccccccccccccccccccchhcccccccCccccccccCCCCCEEECCCC-ccCcccc
Confidence            7776542 22222     2223333333322  11111111100000        01112789999999997 5777653


Q ss_pred             CCcccCCCCccEEEEecCCCCcccCCCCCCCCCcceeEecccchhhcccchhhhhhhheec
Q 036454          349 GNYAFSFPSLEDLIVENCPKLNTFSAGVLKTPRLQAVQNWELGEDFWAGDVNTTLQHLKEK  409 (410)
Q Consensus       349 ~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~L~~l~~~~~~~~~~~~~~~~~~~~l~~~  409 (410)
                           .+++|++|++.+| .++.+|..   +++|++|++++|.-... ++++.++++|+++
T Consensus       302 -----~~~~L~~L~L~~N-~L~~l~~~---~~~L~~L~L~~N~L~~l-p~~~~~L~~L~~~  352 (353)
T d1jl5a_         302 -----LPPRLERLIASFN-HLAEVPEL---PQNLKQLHVEYNPLREF-PDIPESVEDLRMN  352 (353)
T ss_dssp             -----CCTTCCEEECCSS-CCSCCCCC---CTTCCEEECCSSCCSSC-CCCCTTCCEEECC
T ss_pred             -----ccCCCCEEECCCC-cCCccccc---cCCCCEEECcCCcCCCC-CccccccCeeECc
Confidence                 2799999999876 68888864   67899999986543333 3567788888764

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.57  E-value=3.5e-16  Score=139.61  Aligned_cols=86  Identities=17%  Similarity=0.094  Sum_probs=36.3

Q ss_pred             CccCEEEEcccC-CcccccchhhhhcCCCccEEEeccCcccch-hccccCCCCccccccccceeecCcCcccceecCCCc
Q 036454          274 RNLTVLKVCNCW-QLISLVTPQTAKTLVQLRELRVSECNRLEE-IVANDGDADDEIVFSKLKWLFLESSESITSFCSGNY  351 (410)
Q Consensus       274 ~~L~~L~l~~c~-~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~-~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~  351 (410)
                      ++|+.|++++|. .+++.........+|+|++|++++|..+++ .+..+..      +++|++|++++|+.+++..... 
T Consensus       148 ~~L~~L~l~~~~~~i~~~~l~~l~~~~~~L~~L~L~~~~~itd~~~~~l~~------~~~L~~L~L~~C~~i~~~~l~~-  220 (284)
T d2astb2         148 ETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQ------LNYLQHLSLSRCYDIIPETLLE-  220 (284)
T ss_dssp             TTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGG------CTTCCEEECTTCTTCCGGGGGG-
T ss_pred             cccchhhhcccccccccccccccccccccccccccccccCCCchhhhhhcc------cCcCCEEECCCCCCCChHHHHH-
Confidence            445555554442 222222112234445555555555544432 2222222      4555555555555444433221 


Q ss_pred             ccCCCCccEEEEecC
Q 036454          352 AFSFPSLEDLIVENC  366 (410)
Q Consensus       352 ~~~~~~L~~L~l~~c  366 (410)
                      ...+|+|++|++.+|
T Consensus       221 L~~~~~L~~L~l~~~  235 (284)
T d2astb2         221 LGEIPTLKTLQVFGI  235 (284)
T ss_dssp             GGGCTTCCEEECTTS
T ss_pred             HhcCCCCCEEeeeCC
Confidence            123455555555544

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.55  E-value=4.6e-15  Score=132.23  Aligned_cols=66  Identities=15%  Similarity=0.110  Sum_probs=41.7

Q ss_pred             ccCcccEEEeccCcCccccCchhHHhhhhccceEeeccccCcce-EeccCCCCCCCcccccCCCccEEeeccCCCccc
Q 036454           45 IFRNLVVVRIFDCQSLKNIFPTSIARSLLRLETLSIKDCGSVEE-IVANDGRGNDAATKFIFPSLTFLRLRDLPDLTT  121 (410)
Q Consensus        45 ~l~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~-~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~  121 (410)
                      ...+|++|++++| .+.......++.++++|++|++++|. +.. ...         .+..+++|++|++++|..+++
T Consensus        44 ~~~~L~~LdLs~~-~i~~~~l~~l~~~c~~L~~L~L~~~~-l~~~~~~---------~l~~~~~L~~L~Ls~c~~itd  110 (284)
T d2astb2          44 SPFRVQHMDLSNS-VIEVSTLHGILSQCSKLQNLSLEGLR-LSDPIVN---------TLAKNSNLVRLNLSGCSGFSE  110 (284)
T ss_dssp             CCBCCCEEECTTC-EECHHHHHHHHTTBCCCSEEECTTCB-CCHHHHH---------HHTTCTTCSEEECTTCBSCCH
T ss_pred             cCCCCCEEECCCC-ccCHHHHHHHHHhCCCcccccccccC-CCcHHHH---------HHhcCCCCcCccccccccccc
Confidence            4567888888877 33332233445778888888888775 432 222         445567777777777766554

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.54  E-value=6e-14  Score=124.99  Aligned_cols=200  Identities=17%  Similarity=0.150  Sum_probs=136.7

Q ss_pred             CcccEEEeccCcCccccCchhHHhhhhccceEeeccccCcceEeccCCCCCCCcccccCCCccEEeeccCCCccccccCc
Q 036454           47 RNLVVVRIFDCQSLKNIFPTSIARSLLRLETLSIKDCGSVEEIVANDGRGNDAATKFIFPSLTFLRLRDLPDLTTFYSGM  126 (410)
Q Consensus        47 ~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~  126 (410)
                      +++++|+++++ .++.+++..+ .++++|++|+++++. ++.++.        .....+..++.+.......+..++...
T Consensus        32 ~~~~~L~Ls~N-~i~~i~~~~f-~~l~~L~~L~ls~n~-l~~i~~--------~~~~~~~~~~~l~~~~~~~~~~l~~~~  100 (284)
T d1ozna_          32 AASQRIFLHGN-RISHVPAASF-RACRNLTILWLHSNV-LARIDA--------AAFTGLALLEQLDLSDNAQLRSVDPAT  100 (284)
T ss_dssp             TTCSEEECTTS-CCCEECTTTT-TTCTTCCEEECCSSC-CCEECT--------TTTTTCTTCCEEECCSCTTCCCCCTTT
T ss_pred             CCCCEEECcCC-cCCCCCHHHh-hcccccccccccccc-cccccc--------ccccccccccccccccccccccccchh
Confidence            57888999888 6777766554 688889999988876 776664        134456777888777666666665544


Q ss_pred             ccCCCCCceEEEEccCCccccccEEEeeccCcccccccc---cccccEEEEEeCCCccchhhhhhhcccCceEEEecccc
Q 036454          127 HILECPELRKLEVNHVDVFANLEELTLSKCIFTTWRQAQ---FHKLKILHFISDGSDFFQVGLLQNIHNLEKLVLSTCEY  203 (410)
Q Consensus       127 ~~~~~~~L~~L~l~~~~~l~~L~~L~i~~~~~~~~~~~~---l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~  203 (410)
                      +. .+++|+              +|++++|.........   ..+|+.+++....++.++...+..+++|+.|+++++.+
T Consensus       101 ~~-~l~~L~--------------~L~l~~n~~~~~~~~~~~~~~~L~~l~l~~N~l~~i~~~~f~~~~~L~~L~l~~N~l  165 (284)
T d1ozna_         101 FH-GLGRLH--------------TLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRI  165 (284)
T ss_dssp             TT-TCTTCC--------------EEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred             hc-ccccCC--------------EEecCCcccccccccccchhcccchhhhccccccccChhHhccccchhhcccccCcc
Confidence            33 344444              4444444443333222   56677777766666677666778888999999998887


Q ss_pred             ccccccchhhccccccCcccEEEeCCcccccccccCCCCccccccccceEEEEecccccccccc-cCccccCccCEEEEc
Q 036454          204 KKIFSCEEVEEHAEGIAQIKSLKLKKLWLIEEHLWNPDSKLDSFLQNLEFLEVKKCALSLISLV-PSSASFRNLTVLKVC  282 (410)
Q Consensus       204 ~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~l~~l~-~~~~~~~~L~~L~l~  282 (410)
                      ..+.+     ..+.++++|+.+.++++...     ...+..+..+++|++|++++|.  +..++ ..++.+++|++|+++
T Consensus       166 ~~l~~-----~~f~~l~~L~~l~l~~N~l~-----~i~~~~f~~l~~L~~L~l~~N~--i~~~~~~~~~~~~~L~~L~l~  233 (284)
T d1ozna_         166 SSVPE-----RAFRGLHSLDRLLLHQNRVA-----HVHPHAFRDLGRLMTLYLFANN--LSALPTEALAPLRALQYLRLN  233 (284)
T ss_dssp             CEECT-----TTTTTCTTCCEEECCSSCCC-----EECTTTTTTCTTCCEEECCSSC--CSCCCHHHHTTCTTCCEEECC
T ss_pred             cccch-----hhhccccccchhhhhhcccc-----ccChhHhhhhhhcccccccccc--cccccccccccccccCEEEec
Confidence            76644     24667889999999884333     1224557788899999999984  55544 345678889999998


Q ss_pred             cc
Q 036454          283 NC  284 (410)
Q Consensus       283 ~c  284 (410)
                      +.
T Consensus       234 ~N  235 (284)
T d1ozna_         234 DN  235 (284)
T ss_dssp             SS
T ss_pred             CC
Confidence            74

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.53  E-value=4.3e-14  Score=121.61  Aligned_cols=191  Identities=16%  Similarity=0.185  Sum_probs=126.0

Q ss_pred             cccccccCCcEEEecCccccccccccCCccccccCcccEEEeccCcCccccCchhHHhhhhccceEeeccccCcceEecc
Q 036454           13 THSGAATQLRELHVFHLPKLTKLWNKDPQGKLIFRNLVVVRIFDCQSLKNIFPTSIARSLLRLETLSIKDCGSVEEIVAN   92 (410)
Q Consensus        13 ~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~   92 (410)
                      .....+.+|+.|.+.++ +++.+     +++..+++|++|++++| .+..+.+.   .++++|++++++++. ++.++  
T Consensus        35 ~~~~~l~~L~~L~l~~~-~i~~l-----~~l~~l~~L~~L~ls~n-~i~~~~~l---~~l~~l~~l~~~~n~-~~~i~--  101 (227)
T d1h6ua2          35 VTQADLDGITTLSAFGT-GVTTI-----EGVQYLNNLIGLELKDN-QITDLAPL---KNLTKITELELSGNP-LKNVS--  101 (227)
T ss_dssp             ECHHHHHTCCEEECTTS-CCCCC-----TTGGGCTTCCEEECCSS-CCCCCGGG---TTCCSCCEEECCSCC-CSCCG--
T ss_pred             CCHHHcCCcCEEECCCC-CCCcc-----hhHhcCCCCcEeecCCc-eeeccccc---ccccccccccccccc-ccccc--
Confidence            44566788888888887 34432     45668888888888887 45555443   678888888888775 55443  


Q ss_pred             CCCCCCCcccccCCCccEEeeccCCCccccccCcccCCCCCceEEEEccCCccccccEEEeeccCcccccccc-cccccE
Q 036454           93 DGRGNDAATKFIFPSLTFLRLRDLPDLTTFYSGMHILECPELRKLEVNHVDVFANLEELTLSKCIFTTWRQAQ-FHKLKI  171 (410)
Q Consensus        93 ~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~l~~L~~L~i~~~~~~~~~~~~-l~~L~~  171 (410)
                              .+..+++|+.++++++.. ......   ...              +.+..+.++++......+.. .++|+.
T Consensus       102 --------~l~~l~~L~~l~l~~~~~-~~~~~~---~~~--------------~~~~~l~~~~~~~~~~~~~~~~~~L~~  155 (227)
T d1h6ua2         102 --------AIAGLQSIKTLDLTSTQI-TDVTPL---AGL--------------SNLQVLYLDLNQITNISPLAGLTNLQY  155 (227)
T ss_dssp             --------GGTTCTTCCEEECTTSCC-CCCGGG---TTC--------------TTCCEEECCSSCCCCCGGGGGCTTCCE
T ss_pred             --------cccccccccccccccccc-cccchh---ccc--------------cchhhhhchhhhhchhhhhcccccccc
Confidence                    455677888888877632 222111   123              34445555554444333322 677888


Q ss_pred             EEEEeCCCccchhhhhhhcccCceEEEeccccccccccchhhccccccCcccEEEeCCcccccccccCCCCccccccccc
Q 036454          172 LHFISDGSDFFQVGLLQNIHNLEKLVLSTCEYKKIFSCEEVEEHAEGIAQIKSLKLKKLWLIEEHLWNPDSKLDSFLQNL  251 (410)
Q Consensus       172 L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~L  251 (410)
                      |++.+.......  .+.++++|+.|++++|.+..+..       +..+++|++|+++++ ++ +.+     ..+..+++|
T Consensus       156 L~l~~n~~~~~~--~l~~l~~L~~L~Ls~n~l~~l~~-------l~~l~~L~~L~Ls~N-~l-t~i-----~~l~~l~~L  219 (227)
T d1h6ua2         156 LSIGNAQVSDLT--PLANLSKLTTLKADDNKISDISP-------LASLPNLIEVHLKNN-QI-SDV-----SPLANTSNL  219 (227)
T ss_dssp             EECCSSCCCCCG--GGTTCTTCCEEECCSSCCCCCGG-------GGGCTTCCEEECTTS-CC-CBC-----GGGTTCTTC
T ss_pred             ccccccccccch--hhcccccceecccCCCccCCChh-------hcCCCCCCEEECcCC-cC-CCC-----cccccCCCC
Confidence            888555444433  36788999999999988776644       667899999999986 35 343     246788999


Q ss_pred             eEEEEec
Q 036454          252 EFLEVKK  258 (410)
Q Consensus       252 ~~L~l~~  258 (410)
                      +.|++++
T Consensus       220 ~~L~lsn  226 (227)
T d1h6ua2         220 FIVTLTN  226 (227)
T ss_dssp             CEEEEEE
T ss_pred             CEEEeeC
Confidence            9999874

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.52  E-value=5.8e-14  Score=123.81  Aligned_cols=196  Identities=18%  Similarity=0.144  Sum_probs=115.4

Q ss_pred             ccCcccEEEeccCcCccccCchhHHhhhhccceEeeccccCcceEeccCCCCCCCcccccCCCccEEeeccCCCcccccc
Q 036454           45 IFRNLVVVRIFDCQSLKNIFPTSIARSLLRLETLSIKDCGSVEEIVANDGRGNDAATKFIFPSLTFLRLRDLPDLTTFYS  124 (410)
Q Consensus        45 ~l~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~  124 (410)
                      ....+.+++.++. +++.+|+ .+   .+++++|+++++. +..++..        .+..+++|+.|+++++ .++.++.
T Consensus         8 ~~~~~~~v~C~~~-~L~~iP~-~l---p~~l~~L~Ls~N~-i~~l~~~--------~f~~l~~L~~L~L~~N-~l~~l~~   72 (266)
T d1p9ag_           8 KVASHLEVNCDKR-NLTALPP-DL---PKDTTILHLSENL-LYTFSLA--------TLMPYTRLTQLNLDRA-ELTKLQV   72 (266)
T ss_dssp             CSTTCCEEECTTS-CCSSCCS-CC---CTTCCEEECTTSC-CSEEEGG--------GGTTCTTCCEEECTTS-CCCEEEC
T ss_pred             ccCCCeEEEccCC-CCCeeCc-Cc---CcCCCEEECcCCc-CCCcCHH--------Hhhccccccccccccc-ccccccc
Confidence            3445566666655 5666643 22   2579999999986 8888751        4667899999999998 6666543


Q ss_pred             CcccCCCCCceEEEEccCCccccccEEEeeccCcccccccc--cccccEEEEEeCCCccchhhhhhhcccCceEEEeccc
Q 036454          125 GMHILECPELRKLEVNHVDVFANLEELTLSKCIFTTWRQAQ--FHKLKILHFISDGSDFFQVGLLQNIHNLEKLVLSTCE  202 (410)
Q Consensus       125 ~~~~~~~~~L~~L~l~~~~~l~~L~~L~i~~~~~~~~~~~~--l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~  202 (410)
                      ..   .+              ++|+.|++++|.+.......  +++|+.|++........+...+..+.+++.|.++++.
T Consensus        73 ~~---~l--------------~~L~~L~Ls~N~l~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~l~~L~l~~n~  135 (266)
T d1p9ag_          73 DG---TL--------------PVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNE  135 (266)
T ss_dssp             CS---CC--------------TTCCEEECCSSCCSSCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSC
T ss_pred             cc---cc--------------ccccccccccccccccccccccccccccccccccccceeeccccccccccccccccccc
Confidence            21   33              45555555555554333322  5566666664444444444445566666666666665


Q ss_pred             cccccccchhhccccccCcccEEEeCCcccccccccCCCCccccccccceEEEEecccccccccccCccccCccCEEEEc
Q 036454          203 YKKIFSCEEVEEHAEGIAQIKSLKLKKLWLIEEHLWNPDSKLDSFLQNLEFLEVKKCALSLISLVPSSASFRNLTVLKVC  282 (410)
Q Consensus       203 ~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~l~~l~~~~~~~~~L~~L~l~  282 (410)
                      +..+..     ..+..+++|+.+++++     +.+.......+..+++|++|++++|  .++++|..+..+++|+.|+++
T Consensus       136 l~~l~~-----~~~~~l~~l~~l~l~~-----N~l~~~~~~~~~~l~~L~~L~Ls~N--~L~~lp~~~~~~~~L~~L~L~  203 (266)
T d1p9ag_         136 LKTLPP-----GLLTPTPKLEKLSLAN-----NNLTELPAGLLNGLENLDTLLLQEN--SLYTIPKGFFGSHLLPFAFLH  203 (266)
T ss_dssp             CCCCCT-----TTTTTCTTCCEEECTT-----SCCSCCCTTTTTTCTTCCEEECCSS--CCCCCCTTTTTTCCCSEEECC
T ss_pred             cceecc-----ccccccccchhccccc-----ccccccCccccccccccceeecccC--CCcccChhHCCCCCCCEEEec
Confidence            554433     1234456666666666     2222222334555666666666666  455666555556666666666


Q ss_pred             cc
Q 036454          283 NC  284 (410)
Q Consensus       283 ~c  284 (410)
                      +.
T Consensus       204 ~N  205 (266)
T d1p9ag_         204 GN  205 (266)
T ss_dssp             SC
T ss_pred             CC
Confidence            54

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.50  E-value=1.4e-13  Score=121.41  Aligned_cols=172  Identities=22%  Similarity=0.215  Sum_probs=75.8

Q ss_pred             cccEEEEEeCCCccchhhhhhhcccCceEEEeccccccccccchhhccccccCcccEEEeCCcccccccccCCCCccccc
Q 036454          168 KLKILHFISDGSDFFQVGLLQNIHNLEKLVLSTCEYKKIFSCEEVEEHAEGIAQIKSLKLKKLWLIEEHLWNPDSKLDSF  247 (410)
Q Consensus       168 ~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~  247 (410)
                      ++++|++..+.+..++...+.++++|+.|++++|.+..+..       +..+++|++|+++++. + ...    ...+..
T Consensus        32 ~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~L~~N~l~~l~~-------~~~l~~L~~L~Ls~N~-l-~~~----~~~~~~   98 (266)
T d1p9ag_          32 DTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQV-------DGTLPVLGTLDLSHNQ-L-QSL----PLLGQT   98 (266)
T ss_dssp             TCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEEC-------CSCCTTCCEEECCSSC-C-SSC----CCCTTT
T ss_pred             CCCEEECcCCcCCCcCHHHhhcccccccccccccccccccc-------cccccccccccccccc-c-ccc----cccccc
Confidence            34444443333444444445556666666666665554433       3345556666655521 1 111    123444


Q ss_pred             cccceEEEEecccccccccc-cCccccCccCEEEEcccCCcccccchhhhhcCCCccEEEeccCcccchhcc-ccCCCCc
Q 036454          248 LQNLEFLEVKKCALSLISLV-PSSASFRNLTVLKVCNCWQLISLVTPQTAKTLVQLRELRVSECNRLEEIVA-NDGDADD  325 (410)
Q Consensus       248 ~~~L~~L~l~~~~~~l~~l~-~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~-~~~~~~~  325 (410)
                      +++|+.|+++++.  ...++ .....+.++++|.++++ .+..++. .....+++|+.++++++ .++.++. .++.   
T Consensus        99 l~~L~~L~l~~~~--~~~~~~~~~~~l~~l~~L~l~~n-~l~~l~~-~~~~~l~~l~~l~l~~N-~l~~~~~~~~~~---  170 (266)
T d1p9ag_          99 LPALTVLDVSFNR--LTSLPLGALRGLGELQELYLKGN-ELKTLPP-GLLTPTPKLEKLSLANN-NLTELPAGLLNG---  170 (266)
T ss_dssp             CTTCCEEECCSSC--CCCCCSSTTTTCTTCCEEECTTS-CCCCCCT-TTTTTCTTCCEEECTTS-CCSCCCTTTTTT---
T ss_pred             ccccccccccccc--cceeecccccccccccccccccc-ccceecc-ccccccccchhcccccc-cccccCcccccc---
Confidence            5555555555553  22222 22234455555555443 2333322 22334455555555543 2322222 1223   


Q ss_pred             cccccccceeecCcCcccceecCCCcccCCCCccEEEEecC
Q 036454          326 EIVFSKLKWLFLESSESITSFCSGNYAFSFPSLEDLIVENC  366 (410)
Q Consensus       326 ~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~l~~c  366 (410)
                         +++|++|+++++ .++.++.+.  ..+++|+.|++.+.
T Consensus       171 ---l~~L~~L~Ls~N-~L~~lp~~~--~~~~~L~~L~L~~N  205 (266)
T d1p9ag_         171 ---LENLDTLLLQEN-SLYTIPKGF--FGSHLLPFAFLHGN  205 (266)
T ss_dssp             ---CTTCCEEECCSS-CCCCCCTTT--TTTCCCSEEECCSC
T ss_pred             ---ccccceeecccC-CCcccChhH--CCCCCCCEEEecCC
Confidence               455555555542 244444322  23445555555443

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.49  E-value=2.4e-13  Score=116.85  Aligned_cols=188  Identities=18%  Similarity=0.201  Sum_probs=110.5

Q ss_pred             ccCcccEEEeccCcCccccCchhHHhhhhccceEeeccccCcceEeccCCCCCCCcccccCCCccEEeeccCCCcccccc
Q 036454           45 IFRNLVVVRIFDCQSLKNIFPTSIARSLLRLETLSIKDCGSVEEIVANDGRGNDAATKFIFPSLTFLRLRDLPDLTTFYS  124 (410)
Q Consensus        45 ~l~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~  124 (410)
                      .+.+|++|++.+| .++++...   .++++|++|+++++. +..+.          .+..+++|+.++++++ .+++++.
T Consensus        39 ~l~~L~~L~l~~~-~i~~l~~l---~~l~~L~~L~ls~n~-i~~~~----------~l~~l~~l~~l~~~~n-~~~~i~~  102 (227)
T d1h6ua2          39 DLDGITTLSAFGT-GVTTIEGV---QYLNNLIGLELKDNQ-ITDLA----------PLKNLTKITELELSGN-PLKNVSA  102 (227)
T ss_dssp             HHHTCCEEECTTS-CCCCCTTG---GGCTTCCEEECCSSC-CCCCG----------GGTTCCSCCEEECCSC-CCSCCGG
T ss_pred             HcCCcCEEECCCC-CCCcchhH---hcCCCCcEeecCCce-eeccc----------cccccccccccccccc-ccccccc
Confidence            5677777777777 45555433   567777777777764 44432          3455667777777665 2333221


Q ss_pred             CcccCCCCCceEEEEccCCccccccEEEeeccCcccccccccccccEEEEEeCCCccchhhhhhhcccCceEEEeccccc
Q 036454          125 GMHILECPELRKLEVNHVDVFANLEELTLSKCIFTTWRQAQFHKLKILHFISDGSDFFQVGLLQNIHNLEKLVLSTCEYK  204 (410)
Q Consensus       125 ~~~~~~~~~L~~L~l~~~~~l~~L~~L~i~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~  204 (410)
                        + ..+              ++|+.+.++++......                       .+...+.++.+.++++.+.
T Consensus       103 --l-~~l--------------~~L~~l~l~~~~~~~~~-----------------------~~~~~~~~~~l~~~~~~~~  142 (227)
T d1h6ua2         103 --I-AGL--------------QSIKTLDLTSTQITDVT-----------------------PLAGLSNLQVLYLDLNQIT  142 (227)
T ss_dssp             --G-TTC--------------TTCCEEECTTSCCCCCG-----------------------GGTTCTTCCEEECCSSCCC
T ss_pred             --c-ccc--------------ccccccccccccccccc-----------------------hhccccchhhhhchhhhhc
Confidence              1 122              33333333333322111                       2344566777777666544


Q ss_pred             cccccchhhccccccCcccEEEeCCcccccccccCCCCccccccccceEEEEecccccccccccCccccCccCEEEEccc
Q 036454          205 KIFSCEEVEEHAEGIAQIKSLKLKKLWLIEEHLWNPDSKLDSFLQNLEFLEVKKCALSLISLVPSSASFRNLTVLKVCNC  284 (410)
Q Consensus       205 ~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~l~~l~~~~~~~~~L~~L~l~~c  284 (410)
                      ....       +.++++|+.|.+.++...       ....+..+++|++|++++|  .++++++ ++.+++|++|++++|
T Consensus       143 ~~~~-------~~~~~~L~~L~l~~n~~~-------~~~~l~~l~~L~~L~Ls~n--~l~~l~~-l~~l~~L~~L~Ls~N  205 (227)
T d1h6ua2         143 NISP-------LAGLTNLQYLSIGNAQVS-------DLTPLANLSKLTTLKADDN--KISDISP-LASLPNLIEVHLKNN  205 (227)
T ss_dssp             CCGG-------GGGCTTCCEEECCSSCCC-------CCGGGTTCTTCCEEECCSS--CCCCCGG-GGGCTTCCEEECTTS
T ss_pred             hhhh-------hccccccccccccccccc-------cchhhcccccceecccCCC--ccCCChh-hcCCCCCCEEECcCC
Confidence            4333       455677777777764322       1223566788888888887  5666543 567788888888777


Q ss_pred             CCcccccchhhhhcCCCccEEEecc
Q 036454          285 WQLISLVTPQTAKTLVQLRELRVSE  309 (410)
Q Consensus       285 ~~l~~~~~~~~~~~l~~L~~L~l~~  309 (410)
                       ++++++   ..+.+++|+.|++++
T Consensus       206 -~lt~i~---~l~~l~~L~~L~lsn  226 (227)
T d1h6ua2         206 -QISDVS---PLANTSNLFIVTLTN  226 (227)
T ss_dssp             -CCCBCG---GGTTCTTCCEEEEEE
T ss_pred             -cCCCCc---ccccCCCCCEEEeeC
Confidence             577664   356788888888763

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.46  E-value=1.9e-13  Score=115.98  Aligned_cols=58  Identities=28%  Similarity=0.405  Sum_probs=32.7

Q ss_pred             hhhcccCceEEEeccccccccccchhhccccccCcccEEEeCCcccccccccCCCCccccccccceEEEEec
Q 036454          187 LQNIHNLEKLVLSTCEYKKIFSCEEVEEHAEGIAQIKSLKLKKLWLIEEHLWNPDSKLDSFLQNLEFLEVKK  258 (410)
Q Consensus       187 l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~L~~L~l~~  258 (410)
                      +.++++|+.++++++.+..+..       +.++++|++|+++++ .+ +.+     ..+..+++|++|++++
T Consensus       152 ~~~l~~L~~l~l~~n~l~~i~~-------l~~l~~L~~L~Ls~N-~i-~~l-----~~l~~l~~L~~L~Ls~  209 (210)
T d1h6ta2         152 LSRLTKLDTLSLEDNQISDIVP-------LAGLTKLQNLYLSKN-HI-SDL-----RALAGLKNLDVLELFS  209 (210)
T ss_dssp             GGGCTTCSEEECCSSCCCCCGG-------GTTCTTCCEEECCSS-CC-CBC-----GGGTTCTTCSEEEEEE
T ss_pred             cccccccccccccccccccccc-------ccCCCCCCEEECCCC-CC-CCC-----hhhcCCCCCCEEEccC
Confidence            3456666666666666554432       455666666666663 22 222     2355666777776653

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.44  E-value=9.1e-13  Score=117.16  Aligned_cols=186  Identities=17%  Similarity=0.128  Sum_probs=82.8

Q ss_pred             cchhhhhhhcccCceEEEeccccccccccchhhccccccCcccEEEeCCcccccccccCCCCccccccccceEEEEeccc
Q 036454          181 FFQVGLLQNIHNLEKLVLSTCEYKKIFSCEEVEEHAEGIAQIKSLKLKKLWLIEEHLWNPDSKLDSFLQNLEFLEVKKCA  260 (410)
Q Consensus       181 ~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~L~~L~l~~~~  260 (410)
                      .++...+.++++|+.|+++++.+..+..     ..+..+..++.+.+.....+ ..+   ....+..+++|++|++++|.
T Consensus        46 ~i~~~~f~~l~~L~~L~ls~n~l~~i~~-----~~~~~~~~~~~l~~~~~~~~-~~l---~~~~~~~l~~L~~L~l~~n~  116 (284)
T d1ozna_          46 HVPAASFRACRNLTILWLHSNVLARIDA-----AAFTGLALLEQLDLSDNAQL-RSV---DPATFHGLGRLHTLHLDRCG  116 (284)
T ss_dssp             EECTTTTTTCTTCCEEECCSSCCCEECT-----TTTTTCTTCCEEECCSCTTC-CCC---CTTTTTTCTTCCEEECTTSC
T ss_pred             CCCHHHhhcccccccccccccccccccc-----cccccccccccccccccccc-ccc---cchhhcccccCCEEecCCcc
Confidence            3333344555555555555555444432     12233445555554443333 222   12234455555555555553


Q ss_pred             ccccccc-cCccccCccCEEEEcccCCcccccchhhhhcCCCccEEEeccCcccchhc-cccCCCCccccccccceeecC
Q 036454          261 LSLISLV-PSSASFRNLTVLKVCNCWQLISLVTPQTAKTLVQLRELRVSECNRLEEIV-ANDGDADDEIVFSKLKWLFLE  338 (410)
Q Consensus       261 ~~l~~l~-~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~-~~~~~~~~~~~~~~L~~L~l~  338 (410)
                        +..++ .....+++|+.++++++ +++.++. .....+++|++|++.++ .++.++ ..+..      +++|+.+.+.
T Consensus       117 --~~~~~~~~~~~~~~L~~l~l~~N-~l~~i~~-~~f~~~~~L~~L~l~~N-~l~~l~~~~f~~------l~~L~~l~l~  185 (284)
T d1ozna_         117 --LQELGPGLFRGLAALQYLYLQDN-ALQALPD-DTFRDLGNLTHLFLHGN-RISSVPERAFRG------LHSLDRLLLH  185 (284)
T ss_dssp             --CCCCCTTTTTTCTTCCEEECCSS-CCCCCCT-TTTTTCTTCCEEECCSS-CCCEECTTTTTT------CTTCCEEECC
T ss_pred             --cccccccccchhcccchhhhccc-cccccCh-hHhccccchhhcccccC-cccccchhhhcc------ccccchhhhh
Confidence              22222 22334455555555443 3444432 22344455555555554 333332 22223      5555555555


Q ss_pred             cCcccceecCCCcccCCCCccEEEEecCCCCcccCCCCCCCCCcceeEec
Q 036454          339 SSESITSFCSGNYAFSFPSLEDLIVENCPKLNTFSAGVLKTPRLQAVQNW  388 (410)
Q Consensus       339 ~c~~l~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~L~~l~~~  388 (410)
                      ++ .++.+... .+..+++|++|+++++.--...+..+..+++|++|+++
T Consensus       186 ~N-~l~~i~~~-~f~~l~~L~~L~l~~N~i~~~~~~~~~~~~~L~~L~l~  233 (284)
T d1ozna_         186 QN-RVAHVHPH-AFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLN  233 (284)
T ss_dssp             SS-CCCEECTT-TTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECC
T ss_pred             hc-cccccChh-HhhhhhhcccccccccccccccccccccccccCEEEec
Confidence            53 23344332 23345566666665543222222233345556666655

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.41  E-value=8.3e-13  Score=110.91  Aligned_cols=163  Identities=19%  Similarity=0.247  Sum_probs=79.5

Q ss_pred             ccccCCcEEEecCccccccccccCCccccccCcccEEEeccCcCccccCchhHHhhhhccceEeeccccCcceEeccCCC
Q 036454           16 GAATQLRELHVFHLPKLTKLWNKDPQGKLIFRNLVVVRIFDCQSLKNIFPTSIARSLLRLETLSIKDCGSVEEIVANDGR   95 (410)
Q Consensus        16 ~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~   95 (410)
                      ..+++++.|+++++ +++.+     +++..+++|++|++++| .++.+++.   +++++|++|+++++. +..++     
T Consensus        37 ~~l~~l~~L~l~~~-~i~~l-----~~l~~l~nL~~L~Ls~N-~l~~~~~l---~~l~~L~~L~l~~n~-~~~~~-----  100 (199)
T d2omxa2          37 TDLDQVTTLQADRL-GIKSI-----DGVEYLNNLTQINFSNN-QLTDITPL---KNLTKLVDILMNNNQ-IADIT-----  100 (199)
T ss_dssp             HHHTTCCEEECTTS-CCCCC-----TTGGGCTTCCEEECCSS-CCCCCGGG---TTCTTCCEEECCSSC-CCCCG-----
T ss_pred             HHhcCCCEEECCCC-CCCCc-----cccccCCCcCcCccccc-cccCcccc---cCCcccccccccccc-ccccc-----
Confidence            34556666666655 22221     33445666666666655 34444332   455666666665554 33332     


Q ss_pred             CCCCcccccCCCccEEeeccCCCccccccCcccCCCCCceEEEEccCCccccccEEEeeccCcccccccccccccEEEEE
Q 036454           96 GNDAATKFIFPSLTFLRLRDLPDLTTFYSGMHILECPELRKLEVNHVDVFANLEELTLSKCIFTTWRQAQFHKLKILHFI  175 (410)
Q Consensus        96 ~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~l~~L~~L~i~~~~~~~~~~~~l~~L~~L~l~  175 (410)
                           .+..+++|+.|+++++... ....  .               ..+++|+.+++++|.+.                
T Consensus       101 -----~l~~l~~L~~L~l~~~~~~-~~~~--~---------------~~l~~L~~L~l~~n~l~----------------  141 (199)
T d2omxa2         101 -----PLANLTNLTGLTLFNNQIT-DIDP--L---------------KNLTNLNRLELSSNTIS----------------  141 (199)
T ss_dssp             -----GGTTCTTCSEEECCSSCCC-CCGG--G---------------TTCTTCSEEECCSSCCC----------------
T ss_pred             -----ccccccccccccccccccc-cccc--c---------------chhhhhHHhhhhhhhhc----------------
Confidence                 2344555555555554221 1110  0               11134444444444332                


Q ss_pred             eCCCccchhhhhhhcccCceEEEeccccccccccchhhccccccCcccEEEeCCcccccccccCCCCccccccccceEE
Q 036454          176 SDGSDFFQVGLLQNIHNLEKLVLSTCEYKKIFSCEEVEEHAEGIAQIKSLKLKKLWLIEEHLWNPDSKLDSFLQNLEFL  254 (410)
Q Consensus       176 ~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~L~~L  254 (410)
                           ..+  .+..+++|+.|.+.+|.+..+.+       +.++++|++|+++++. + ..+     ..+..+++|++|
T Consensus       142 -----~~~--~l~~~~~L~~L~l~~n~l~~l~~-------l~~l~~L~~L~ls~N~-i-~~i-----~~l~~L~~L~~L  199 (199)
T d2omxa2         142 -----DIS--ALSGLTSLQQLNFSSNQVTDLKP-------LANLTTLERLDISSNK-V-SDI-----SVLAKLTNLESL  199 (199)
T ss_dssp             -----CCG--GGTTCTTCSEEECCSSCCCCCGG-------GTTCTTCCEEECCSSC-C-CCC-----GGGGGCTTCSEE
T ss_pred             -----ccc--cccccccccccccccccccCCcc-------ccCCCCCCEEECCCCC-C-CCC-----ccccCCCCCCcC
Confidence                 222  24556666666666666555433       4556667777776642 2 222     234556666654

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.39  E-value=1.9e-12  Score=109.56  Aligned_cols=80  Identities=24%  Similarity=0.284  Sum_probs=55.5

Q ss_pred             hhhcccCceEEEeccccccccccchhhccccccCcccEEEeCCcccccccccCCCCccccccccceEEEEeccccccccc
Q 036454          187 LQNIHNLEKLVLSTCEYKKIFSCEEVEEHAEGIAQIKSLKLKKLWLIEEHLWNPDSKLDSFLQNLEFLEVKKCALSLISL  266 (410)
Q Consensus       187 l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~l~~l  266 (410)
                      +.++++++.+.++++.+.....       ...+++|+.++++++     .+.  ....+..+++|++|++++|  .++++
T Consensus       130 l~~l~~l~~l~~~~n~l~~~~~-------~~~l~~L~~l~l~~n-----~l~--~i~~l~~l~~L~~L~Ls~N--~i~~l  193 (210)
T d1h6ta2         130 LVHLPQLESLYLGNNKITDITV-------LSRLTKLDTLSLEDN-----QIS--DIVPLAGLTKLQNLYLSKN--HISDL  193 (210)
T ss_dssp             GGGCTTCCEEECCSSCCCCCGG-------GGGCTTCSEEECCSS-----CCC--CCGGGTTCTTCCEEECCSS--CCCBC
T ss_pred             cccccccccccccccccccccc-------ccccccccccccccc-----ccc--ccccccCCCCCCEEECCCC--CCCCC
Confidence            5667888888888777655433       456788888888874     221  1223667888888888888  56666


Q ss_pred             ccCccccCccCEEEEcc
Q 036454          267 VPSSASFRNLTVLKVCN  283 (410)
Q Consensus       267 ~~~~~~~~~L~~L~l~~  283 (410)
                      + .+..+++|++|++++
T Consensus       194 ~-~l~~l~~L~~L~Ls~  209 (210)
T d1h6ta2         194 R-ALAGLKNLDVLELFS  209 (210)
T ss_dssp             G-GGTTCTTCSEEEEEE
T ss_pred             h-hhcCCCCCCEEEccC
Confidence            4 367788888888853

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.38  E-value=1.8e-12  Score=108.77  Aligned_cols=154  Identities=18%  Similarity=0.215  Sum_probs=99.7

Q ss_pred             ccccccCccc-cccccccCCcEEEecCccccccccccCCccccccCcccEEEeccCcCccccCchhHHhhhhccceEeec
Q 036454            3 FDLQEVNSEE-THSGAATQLRELHVFHLPKLTKLWNKDPQGKLIFRNLVVVRIFDCQSLKNIFPTSIARSLLRLETLSIK   81 (410)
Q Consensus         3 ~~~~~~~~~~-~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~   81 (410)
                      +++.+..+.+ ..++.|++|++|+++++ .++.+     .++..+++|++|++.+| .+..+++.   .++++|++|+++
T Consensus        45 L~l~~~~i~~l~~l~~l~nL~~L~Ls~N-~l~~~-----~~l~~l~~L~~L~l~~n-~~~~~~~l---~~l~~L~~L~l~  114 (199)
T d2omxa2          45 LQADRLGIKSIDGVEYLNNLTQINFSNN-QLTDI-----TPLKNLTKLVDILMNNN-QIADITPL---ANLTNLTGLTLF  114 (199)
T ss_dssp             EECTTSCCCCCTTGGGCTTCCEEECCSS-CCCCC-----GGGTTCTTCCEEECCSS-CCCCCGGG---TTCTTCSEEECC
T ss_pred             EECCCCCCCCccccccCCCcCcCccccc-cccCc-----ccccCCccccccccccc-cccccccc---cccccccccccc
Confidence            3444444433 24788999999999998 45543     23679999999999998 45555443   689999999999


Q ss_pred             cccCcceEeccCCCCCCCcccccCCCccEEeeccCCCccccccCcccCCCCCceEEEEccCCccccccEEEeeccCcccc
Q 036454           82 DCGSVEEIVANDGRGNDAATKFIFPSLTFLRLRDLPDLTTFYSGMHILECPELRKLEVNHVDVFANLEELTLSKCIFTTW  161 (410)
Q Consensus        82 ~~~~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~l~~L~~L~i~~~~~~~~  161 (410)
                      ++. ...+.          .+..+++|+.|+++++ .+..++..   ..+              ++|+.|++.+|.+..+
T Consensus       115 ~~~-~~~~~----------~~~~l~~L~~L~l~~n-~l~~~~~l---~~~--------------~~L~~L~l~~n~l~~l  165 (199)
T d2omxa2         115 NNQ-ITDID----------PLKNLTNLNRLELSSN-TISDISAL---SGL--------------TSLQQLNFSSNQVTDL  165 (199)
T ss_dssp             SSC-CCCCG----------GGTTCTTCSEEECCSS-CCCCCGGG---TTC--------------TTCSEEECCSSCCCCC
T ss_pred             ccc-ccccc----------ccchhhhhHHhhhhhh-hhcccccc---ccc--------------ccccccccccccccCC
Confidence            886 43332          4667899999999987 44443321   133              4455555555444322


Q ss_pred             cccccccccEEEEEeCCCccchhhhhhhcccCceEEEeccccccccccchhhccccccCcccEE
Q 036454          162 RQAQFHKLKILHFISDGSDFFQVGLLQNIHNLEKLVLSTCEYKKIFSCEEVEEHAEGIAQIKSL  225 (410)
Q Consensus       162 ~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~L~~L  225 (410)
                      .                       .++++++|+.|++++|++..+..       +.++++|++|
T Consensus       166 ~-----------------------~l~~l~~L~~L~ls~N~i~~i~~-------l~~L~~L~~L  199 (199)
T d2omxa2         166 K-----------------------PLANLTTLERLDISSNKVSDISV-------LAKLTNLESL  199 (199)
T ss_dssp             G-----------------------GGTTCTTCCEEECCSSCCCCCGG-------GGGCTTCSEE
T ss_pred             c-----------------------cccCCCCCCEEECCCCCCCCCcc-------ccCCCCCCcC
Confidence            2                       24566677777777766655432       4456666654

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.32  E-value=2.8e-11  Score=104.58  Aligned_cols=101  Identities=22%  Similarity=0.246  Sum_probs=59.9

Q ss_pred             cEEEecCccccccccccCCccccccCcccEEEeccCcCccccCchhHHhhhhccceEeeccccCcceEeccCCCCCCCcc
Q 036454           22 RELHVFHLPKLTKLWNKDPQGKLIFRNLVVVRIFDCQSLKNIFPTSIARSLLRLETLSIKDCGSVEEIVANDGRGNDAAT  101 (410)
Q Consensus        22 ~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~  101 (410)
                      +.++.++. +++.+    |+++  .+++++|+++++ .++.+++..+ .++++|++|+++++.....++.        ..
T Consensus        11 ~~i~c~~~-~l~~i----P~~l--~~~l~~L~Ls~n-~i~~l~~~~f-~~l~~L~~L~ls~n~~~~~i~~--------~~   73 (242)
T d1xwdc1          11 RVFLCQES-KVTEI----PSDL--PRNAIELRFVLT-KLRVIQKGAF-SGFGDLEKIEISQNDVLEVIEA--------DV   73 (242)
T ss_dssp             SEEEEESC-SCSSC----CSCS--CSCCSEEEEESC-CCCEECTTTT-TTCTTCCEEEEESCTTCCEECS--------SS
T ss_pred             CEEEEeCC-CCCCc----CCCC--CCCCCEEECcCC-cCCccChhHh-hccchhhhhhhccccccceeec--------cc
Confidence            45666654 34444    5543  357888888887 5666665444 5788888888888763333332        14


Q ss_pred             cccCCCccEEeeccCCCccccccCcccCCCCCceEEEEc
Q 036454          102 KFIFPSLTFLRLRDLPDLTTFYSGMHILECPELRKLEVN  140 (410)
Q Consensus       102 ~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~  140 (410)
                      +..+++++.+.+..+..+...+...+. .+++|+++.+.
T Consensus        74 f~~l~~l~~l~~~~~n~l~~~~~~~~~-~l~~L~~l~l~  111 (242)
T d1xwdc1          74 FSNLPKLHEIRIEKANNLLYINPEAFQ-NLPNLQYLLIS  111 (242)
T ss_dssp             EESCTTCCEEEEECCTTCCEECTTSEE-CCTTCCEEEEE
T ss_pred             ccccccccccccccccccccccccccc-ccccccccccc
Confidence            456678888887766566555544332 33444444333

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.31  E-value=3.6e-11  Score=103.89  Aligned_cols=202  Identities=12%  Similarity=0.143  Sum_probs=124.3

Q ss_pred             cccccEEEEEeCCCccchhhhhhhcccCceEEEeccccccccccchhhccccccCcccEEEeCCcccccccccCCCCccc
Q 036454          166 FHKLKILHFISDGSDFFQVGLLQNIHNLEKLVLSTCEYKKIFSCEEVEEHAEGIAQIKSLKLKKLWLIEEHLWNPDSKLD  245 (410)
Q Consensus       166 l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~  245 (410)
                      .++++.|+++...+..++...+.++++|+.|+++++.+...++    ...+.++++++++.+..+.++ ...   ....+
T Consensus        28 ~~~l~~L~Ls~n~i~~l~~~~f~~l~~L~~L~ls~n~~~~~i~----~~~f~~l~~l~~l~~~~~n~l-~~~---~~~~~   99 (242)
T d1xwdc1          28 PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIE----ADVFSNLPKLHEIRIEKANNL-LYI---NPEAF   99 (242)
T ss_dssp             CSCCSEEEEESCCCCEECTTTTTTCTTCCEEEEESCTTCCEEC----SSSEESCTTCCEEEEECCTTC-CEE---CTTSE
T ss_pred             CCCCCEEECcCCcCCccChhHhhccchhhhhhhccccccceee----ccccccccccccccccccccc-ccc---ccccc
Confidence            3455566665555556665567788888989888887654432    123566788888888776665 443   23446


Q ss_pred             cccccceEEEEecccccccccccCccccCccCEEEEc--ccCCcccccchhhhhcCCCccEEEeccCcccchhccccCCC
Q 036454          246 SFLQNLEFLEVKKCALSLISLVPSSASFRNLTVLKVC--NCWQLISLVTPQTAKTLVQLRELRVSECNRLEEIVANDGDA  323 (410)
Q Consensus       246 ~~~~~L~~L~l~~~~~~l~~l~~~~~~~~~L~~L~l~--~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~  323 (410)
                      ..+++|++|++.++  .+...+. ...+.+++.+...  ++..+..++.....+....++.|++.+ ..++.+...... 
T Consensus       100 ~~l~~L~~l~l~~~--~l~~~~~-~~~~~~l~~l~~~~~~n~~l~~i~~~~~~~~~~~l~~L~l~~-n~l~~i~~~~~~-  174 (242)
T d1xwdc1         100 QNLPNLQYLLISNT--GIKHLPD-VHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNK-NGIQEIHNCAFN-  174 (242)
T ss_dssp             ECCTTCCEEEEESC--CCCSCCC-CTTTCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCS-SCCCEECTTTTT-
T ss_pred             cccccccccccchh--hhccccc-ccccccccccccccccccccccccccccccccccceeeeccc-cccccccccccc-
Confidence            77889999999888  4544432 3334444444322  334455554322223334677788875 455555554444 


Q ss_pred             CccccccccceeecCcCcccceecCCCcccCCCCccEEEEecCCCCcccCCC-CCCCCCcceeEe
Q 036454          324 DDEIVFSKLKWLFLESSESITSFCSGNYAFSFPSLEDLIVENCPKLNTFSAG-VLKTPRLQAVQN  387 (410)
Q Consensus       324 ~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~-~~~~~~L~~l~~  387 (410)
                           .++++++....+..++.++.. .+.++++|++|+++++ +++.+|.. +..+++|+.+++
T Consensus       175 -----~~~l~~~~~l~~n~l~~l~~~-~f~~l~~L~~L~Ls~N-~l~~l~~~~~~~l~~L~~l~~  232 (242)
T d1xwdc1         175 -----GTQLDELNLSDNNNLEELPND-VFHGASGPVILDISRT-RIHSLPSYGLENLKKLRARST  232 (242)
T ss_dssp             -----TCCEEEEECTTCTTCCCCCTT-TTTTSCCCSEEECTTS-CCCCCCSSSCTTCCEEESSSE
T ss_pred             -----chhhhccccccccccccccHH-HhcCCCCCCEEECCCC-cCCccCHHHHcCCcccccCcC
Confidence                 566777766666778877654 3557889999999776 47777654 345555555554

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.09  E-value=6.4e-12  Score=118.83  Aligned_cols=368  Identities=16%  Similarity=0.115  Sum_probs=185.2

Q ss_pred             cccccccCccc----cccccccCCcEEEecCcccccc-ccccCCccccccCcccEEEeccCcCccccCchhHHhh----h
Q 036454            2 IFDLQEVNSEE----THSGAATQLRELHVFHLPKLTK-LWNKDPQGKLIFRNLVVVRIFDCQSLKNIFPTSIARS----L   72 (410)
Q Consensus         2 ~~~~~~~~~~~----~~~~~~~~L~~L~l~~~~~l~~-~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~----l   72 (410)
                      .+|++.....+    ..++.++++++|++.+|. ++. -+......+..+++|++|+++++ .+.+.....++..    .
T Consensus         6 ~ld~~~~~i~~~~~~~l~~~l~~l~~L~L~~~~-i~~~~~~~l~~~L~~~~~L~~LdLs~N-~i~~~~~~~l~~~l~~~~   83 (460)
T d1z7xw1           6 SLDIQCEELSDARWAELLPLLQQCQVVRLDDCG-LTEARCKDISSALRVNPALAELNLRSN-ELGDVGVHCVLQGLQTPS   83 (460)
T ss_dssp             EEEEESCCCCHHHHHHHHHHHTTCSEEEEESSC-CCHHHHHHHHHHHHTCTTCCEEECTTC-CCHHHHHHHHHHTTCSTT
T ss_pred             EEEeeCCcCChHHHHHHHHhCCCCCEEEeCCCC-CCHHHHHHHHHHHhcCCCCCEEECcCC-cCChHHHHHHHHHHhcCC
Confidence            35555555543    225667777777777773 331 11111222346677777777766 3432211222221    2


Q ss_pred             hccceEeeccccCcceEeccCCCCCCCcccccCCCccEEeeccCCCccccccCc----ccCCCCCceEEEEccC------
Q 036454           73 LRLETLSIKDCGSVEEIVANDGRGNDAATKFIFPSLTFLRLRDLPDLTTFYSGM----HILECPELRKLEVNHV------  142 (410)
Q Consensus        73 ~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~----~~~~~~~L~~L~l~~~------  142 (410)
                      .+|++|++++|. +.......    ....+..+++|++|+++++. +.+.....    ................      
T Consensus        84 ~~L~~L~L~~n~-it~~~~~~----l~~~l~~~~~L~~L~L~~N~-i~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~  157 (460)
T d1z7xw1          84 CKIQKLSLQNCC-LTGAGCGV----LSSTLRTLPTLQELHLSDNL-LGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAAS  157 (460)
T ss_dssp             CCCCEEECTTSC-CBGGGHHH----HHHHTTSCTTCCEEECCSSB-CHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGG
T ss_pred             CCCCEEECCCCC-cccccccc----ccchhhcccccccccccccc-chhhhhhhhhhcccccccccccccccccccchhh
Confidence            357777777764 43321100    00133455677777777653 22110000    0001111122222111      


Q ss_pred             --------CccccccEEEeeccCccccccc--------ccccccEEEEEeCCCccc----hhhhhhhcccCceEEEeccc
Q 036454          143 --------DVFANLEELTLSKCIFTTWRQA--------QFHKLKILHFISDGSDFF----QVGLLQNIHNLEKLVLSTCE  202 (410)
Q Consensus       143 --------~~l~~L~~L~i~~~~~~~~~~~--------~l~~L~~L~l~~~~~~~~----~~~~l~~l~~L~~L~l~~~~  202 (410)
                              ...+.++.+.++++........        .......+.+........    ....+...+.++.+.+.++.
T Consensus       158 ~~~~~~~l~~~~~~~~~~ls~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~n~  237 (460)
T d1z7xw1         158 CEPLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNK  237 (460)
T ss_dssp             HHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSB
T ss_pred             hcccccccccccccccccccccccccccccccccccccccccccccccccccccchhhhcccccccccccccccchhhcc
Confidence                    1224556666665543321100        023445565522222211    12234567888999988775


Q ss_pred             cccccccchhhccccccCcccEEEeCCcccccccccCCCCccccccccceEEEEecccccccc-----cccCc-cccCcc
Q 036454          203 YKKIFSCEEVEEHAEGIAQIKSLKLKKLWLIEEHLWNPDSKLDSFLQNLEFLEVKKCALSLIS-----LVPSS-ASFRNL  276 (410)
Q Consensus       203 ~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~l~~-----l~~~~-~~~~~L  276 (410)
                      ...................++.++++++... ..............+.++.++++++.  +.+     +...+ ...+.|
T Consensus       238 ~~~~~~~~~~~~~~~~~~~l~~l~l~~n~i~-~~~~~~~~~~l~~~~~l~~l~l~~n~--i~~~~~~~l~~~l~~~~~~L  314 (460)
T d1z7xw1         238 LGDVGMAELCPGLLHPSSRLRTLWIWECGIT-AKGCGDLCRVLRAKESLKELSLAGNE--LGDEGARLLCETLLEPGCQL  314 (460)
T ss_dssp             CHHHHHHHHHHHHTSTTCCCCEEECTTSCCC-HHHHHHHHHHHHHCTTCCEEECTTCC--CHHHHHHHHHHHHTSTTCCC
T ss_pred             ccccccchhhccccccccccccccccccccc-cccccccccccccccccccccccccc--ccccccchhhcccccccccc
Confidence            4322110011122344578999999986433 11100011234567889999999885  321     11111 234679


Q ss_pred             CEEEEcccCCcccccch---hhhhcCCCccEEEeccCcccch-----hccccCCCCccccccccceeecCcCcccceecC
Q 036454          277 TVLKVCNCWQLISLVTP---QTAKTLVQLRELRVSECNRLEE-----IVANDGDADDEIVFSKLKWLFLESSESITSFCS  348 (410)
Q Consensus       277 ~~L~l~~c~~l~~~~~~---~~~~~l~~L~~L~l~~c~~l~~-----~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~  348 (410)
                      +.+.+++|. +......   ......++|++|+++++. +.+     ++..+..     ..+.|++|++++| .+++...
T Consensus       315 ~~l~l~~~~-l~~~~~~~l~~~~~~~~~L~~L~Ls~N~-i~~~g~~~l~~~l~~-----~~~~L~~L~Ls~n-~i~~~~~  386 (460)
T d1z7xw1         315 ESLWVKSCS-FTAACCSHFSSVLAQNRFLLELQISNNR-LEDAGVRELCQGLGQ-----PGSVLRVLWLADC-DVSDSSC  386 (460)
T ss_dssp             CEEECTTSC-CBGGGHHHHHHHHHHCSSCCEEECCSSB-CHHHHHHHHHHHHTS-----TTCCCCEEECTTS-CCCHHHH
T ss_pred             ccccccccc-hhhhhhhhcccccccccchhhhheeeec-ccCcccchhhhhhhc-----ccCCCCEEECCCC-CCChHHH
Confidence            999998873 4433211   233567899999999864 432     2222221     1567999999998 5765332


Q ss_pred             CC---cccCCCCccEEEEecCCCCcc-----cCCCCC-CCCCcceeEecc
Q 036454          349 GN---YAFSFPSLEDLIVENCPKLNT-----FSAGVL-KTPRLQAVQNWE  389 (410)
Q Consensus       349 ~~---~~~~~~~L~~L~l~~c~~l~~-----~~~~~~-~~~~L~~l~~~~  389 (410)
                      ..   ....+++|++|+++++ .+..     +...+. ...+|+.+.+++
T Consensus       387 ~~l~~~l~~~~~L~~L~Ls~N-~i~~~g~~~l~~~l~~~~~~L~~l~l~~  435 (460)
T d1z7xw1         387 SSLAATLLANHSLRELDLSNN-CLGDAGILQLVESVRQPGCLLEQLVLYD  435 (460)
T ss_dssp             HHHHHHHHHCCCCCEEECCSS-SCCHHHHHHHHHHHTSTTCCCCEEECTT
T ss_pred             HHHHHHHhcCCCCCEEECCCC-cCCHHHHHHHHHHHHhCCCccCEEECCC
Confidence            11   2235799999999887 4432     222222 234799999973

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.98  E-value=5.1e-11  Score=112.49  Aligned_cols=68  Identities=19%  Similarity=0.104  Sum_probs=43.2

Q ss_pred             cccccCCcEEEecCcccccc-ccccCCcccc-ccCcccEEEeccCcCccccCchhH---HhhhhccceEeecccc
Q 036454           15 SGAATQLRELHVFHLPKLTK-LWNKDPQGKL-IFRNLVVVRIFDCQSLKNIFPTSI---ARSLLRLETLSIKDCG   84 (410)
Q Consensus        15 ~~~~~~L~~L~l~~~~~l~~-~~~~~~~~~~-~l~~L~~L~l~~~~~l~~~~~~~~---~~~l~~L~~L~l~~~~   84 (410)
                      +..+++|+.|+++++. ++. -+......+. ...+|++|++++| .+++.....+   +..+++|++|+++++.
T Consensus        51 L~~~~~L~~LdLs~N~-i~~~~~~~l~~~l~~~~~~L~~L~L~~n-~it~~~~~~l~~~l~~~~~L~~L~L~~N~  123 (460)
T d1z7xw1          51 LRVNPALAELNLRSNE-LGDVGVHCVLQGLQTPSCKIQKLSLQNC-CLTGAGCGVLSSTLRTLPTLQELHLSDNL  123 (460)
T ss_dssp             HHTCTTCCEEECTTCC-CHHHHHHHHHHTTCSTTCCCCEEECTTS-CCBGGGHHHHHHHTTSCTTCCEEECCSSB
T ss_pred             HhcCCCCCEEECcCCc-CChHHHHHHHHHHhcCCCCCCEEECCCC-Cccccccccccchhhcccccccccccccc
Confidence            5678999999999874 431 1111111111 2358999999999 4654322222   2467899999999875

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.96  E-value=6.4e-10  Score=89.40  Aligned_cols=104  Identities=20%  Similarity=0.207  Sum_probs=49.0

Q ss_pred             hhcccCceEEEeccccccccccchhhccccccCcccEEEeCCcccccccccCCCCccccccccceEEEEecccccccccc
Q 036454          188 QNIHNLEKLVLSTCEYKKIFSCEEVEEHAEGIAQIKSLKLKKLWLIEEHLWNPDSKLDSFLQNLEFLEVKKCALSLISLV  267 (410)
Q Consensus       188 ~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~l~~l~  267 (410)
                      ..+++|+.|++++|.+..+..       +..+++|++|+++++.-.  .+   .......+++|++|++++|  .+.+++
T Consensus        38 ~~l~~L~~L~Ls~N~i~~l~~-------~~~l~~L~~L~ls~N~i~--~l---~~~~~~~l~~L~~L~L~~N--~i~~~~  103 (162)
T d1a9na_          38 ATLDQFDAIDFSDNEIRKLDG-------FPLLRRLKTLLVNNNRIC--RI---GEGLDQALPDLTELILTNN--SLVELG  103 (162)
T ss_dssp             GGTTCCSEEECCSSCCCEECC-------CCCCSSCCEEECCSSCCC--EE---CSCHHHHCTTCCEEECCSC--CCCCGG
T ss_pred             cccccCCEEECCCCCCCccCC-------cccCcchhhhhccccccc--CC---Cccccccccccccceeccc--cccccc
Confidence            445566666666665554422       444555666666553211  11   1122344556666666655  333332


Q ss_pred             --cCccccCccCEEEEcccCCcccccc--hhhhhcCCCccEEE
Q 036454          268 --PSSASFRNLTVLKVCNCWQLISLVT--PQTAKTLVQLRELR  306 (410)
Q Consensus       268 --~~~~~~~~L~~L~l~~c~~l~~~~~--~~~~~~l~~L~~L~  306 (410)
                        ..+..+++|++|++++|+ +...+.  ...+..+|+|+.|+
T Consensus       104 ~l~~l~~l~~L~~L~l~~N~-i~~~~~~r~~~i~~lp~L~~LD  145 (162)
T d1a9na_         104 DLDPLASLKSLTYLCILRNP-VTNKKHYRLYVIYKVPQVRVLD  145 (162)
T ss_dssp             GGGGGGGCTTCCEEECCSSG-GGGSTTHHHHHHHHCTTCSEET
T ss_pred             cccccccccccchhhcCCCc-cccccchHHHHHHHCCCcCeeC
Confidence              123445556666665553 333321  12234555555554

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.93  E-value=9.6e-10  Score=88.34  Aligned_cols=82  Identities=21%  Similarity=0.194  Sum_probs=37.9

Q ss_pred             cccCCcEEEecCccccccccccCCccccccCcccEEEeccCcCccccCchhHHhhhhccceEeeccccCcceEeccCCCC
Q 036454           17 AATQLRELHVFHLPKLTKLWNKDPQGKLIFRNLVVVRIFDCQSLKNIFPTSIARSLLRLETLSIKDCGSVEEIVANDGRG   96 (410)
Q Consensus        17 ~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~   96 (410)
                      +...+|+|+++++ .++.+    +.....+++|++|+++++ .+..++..   ..+++|++|+++++. +..++.     
T Consensus        16 n~~~lr~L~L~~n-~I~~i----~~~~~~l~~L~~L~Ls~N-~i~~l~~~---~~l~~L~~L~ls~N~-i~~l~~-----   80 (162)
T d1a9na_          16 NAVRDRELDLRGY-KIPVI----ENLGATLDQFDAIDFSDN-EIRKLDGF---PLLRRLKTLLVNNNR-ICRIGE-----   80 (162)
T ss_dssp             CTTSCEEEECTTS-CCCSC----CCGGGGTTCCSEEECCSS-CCCEECCC---CCCSSCCEEECCSSC-CCEECS-----
T ss_pred             CcCcCcEEECCCC-CCCcc----CccccccccCCEEECCCC-CCCccCCc---ccCcchhhhhccccc-ccCCCc-----
Confidence            3445555555554 23322    222234555555555555 34444332   345555555555554 444443     


Q ss_pred             CCCcccccCCCccEEeeccC
Q 036454           97 NDAATKFIFPSLTFLRLRDL  116 (410)
Q Consensus        97 ~~~~~~~~l~~L~~L~l~~~  116 (410)
                         .....+++|+.|+++++
T Consensus        81 ---~~~~~l~~L~~L~L~~N   97 (162)
T d1a9na_          81 ---GLDQALPDLTELILTNN   97 (162)
T ss_dssp             ---CHHHHCTTCCEEECCSC
T ss_pred             ---cccccccccccceeccc
Confidence               01233455555555554

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.90  E-value=3.1e-09  Score=81.08  Aligned_cols=38  Identities=18%  Similarity=0.183  Sum_probs=16.3

Q ss_pred             ccccCcccEEEeccCcCccccCchhHHhhhhccceEeeccc
Q 036454           43 KLIFRNLVVVRIFDCQSLKNIFPTSIARSLLRLETLSIKDC   83 (410)
Q Consensus        43 ~~~l~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~   83 (410)
                      +..+++|++|+++++ .++.+++ .+ +.+++|+.|+++++
T Consensus        16 l~~l~~L~~L~ls~N-~l~~lp~-~~-~~l~~L~~L~l~~N   53 (124)
T d1dcea3          16 LEQLLLVTHLDLSHN-RLRALPP-AL-AALRCLEVLQASDN   53 (124)
T ss_dssp             GGGGTTCCEEECCSS-CCCCCCG-GG-GGCTTCCEEECCSS
T ss_pred             cccCCCCCEEECCCC-ccCcchh-hh-hhhhcccccccccc
Confidence            334444455554444 3333322 11 34444444444444

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.88  E-value=1.7e-09  Score=82.56  Aligned_cols=100  Identities=22%  Similarity=0.265  Sum_probs=79.7

Q ss_pred             CcccccccCcccc-ccccccCCcEEEecCccccccccccCCccccccCcccEEEeccCcCccccCchhHHhhhhccceEe
Q 036454            1 EIFDLQEVNSEET-HSGAATQLRELHVFHLPKLTKLWNKDPQGKLIFRNLVVVRIFDCQSLKNIFPTSIARSLLRLETLS   79 (410)
Q Consensus         1 ~~~~~~~~~~~~~-~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~   79 (410)
                      ++++++.+...+. .++.+++|++|+++++ .++.+    |..+..+++|++|+++++ .++.++..   .++++|++|+
T Consensus         1 R~L~Ls~n~l~~l~~l~~l~~L~~L~ls~N-~l~~l----p~~~~~l~~L~~L~l~~N-~i~~l~~~---~~l~~L~~L~   71 (124)
T d1dcea3           1 RVLHLAHKDLTVLCHLEQLLLVTHLDLSHN-RLRAL----PPALAALRCLEVLQASDN-ALENVDGV---ANLPRLQELL   71 (124)
T ss_dssp             SEEECTTSCCSSCCCGGGGTTCCEEECCSS-CCCCC----CGGGGGCTTCCEEECCSS-CCCCCGGG---TTCSSCCEEE
T ss_pred             CEEEcCCCCCCCCcccccCCCCCEEECCCC-ccCcc----hhhhhhhhcccccccccc-cccccCcc---ccccccCeEE
Confidence            4688888877653 4889999999999997 55554    677889999999999998 66766543   7899999999


Q ss_pred             eccccCcceEeccCCCCCCCcccccCCCccEEeeccCC
Q 036454           80 IKDCGSVEEIVANDGRGNDAATKFIFPSLTFLRLRDLP  117 (410)
Q Consensus        80 l~~~~~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~  117 (410)
                      ++++. +..++.-       ..+..+++|+.|++++++
T Consensus        72 l~~N~-i~~~~~~-------~~l~~~~~L~~L~l~~N~  101 (124)
T d1dcea3          72 LCNNR-LQQSAAI-------QPLVSCPRLVLLNLQGNS  101 (124)
T ss_dssp             CCSSC-CCSSSTT-------GGGGGCTTCCEEECTTSG
T ss_pred             CCCCc-cCCCCCc-------hhhcCCCCCCEEECCCCc
Confidence            99986 7666531       156778999999999873

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=98.65  E-value=1.8e-09  Score=89.84  Aligned_cols=109  Identities=25%  Similarity=0.302  Sum_probs=68.9

Q ss_pred             hhhhcccCceEEEeccccccccccchhhccccccCcccEEEeCCcccccccccCCCCccccccccceEEEEecccccccc
Q 036454          186 LLQNIHNLEKLVLSTCEYKKIFSCEEVEEHAEGIAQIKSLKLKKLWLIEEHLWNPDSKLDSFLQNLEFLEVKKCALSLIS  265 (410)
Q Consensus       186 ~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~l~~  265 (410)
                      .+..+++|+.|+++++.+..+..       +.++++|++|+++++. + ..+    ......+++|++|++++|  .+++
T Consensus        43 sl~~L~~L~~L~Ls~n~I~~i~~-------l~~l~~L~~L~Ls~N~-i-~~i----~~~~~~~~~L~~L~l~~N--~i~~  107 (198)
T d1m9la_          43 TLSTLKACKHLALSTNNIEKISS-------LSGMENLRILSLGRNL-I-KKI----ENLDAVADTLEELWISYN--QIAS  107 (198)
T ss_dssp             HHHHTTTCCEEECSEEEESCCCC-------HHHHTTCCEEECCEEE-E-CSC----SSHHHHHHHCCEEECSEE--ECCC
T ss_pred             HHhcccccceeECcccCCCCccc-------ccCCccccChhhcccc-c-ccc----cccccccccccccccccc--cccc
Confidence            45677788888888777666533       5567778888887632 2 122    123344567888888777  4555


Q ss_pred             cccCccccCccCEEEEcccCCcccccchhhhhcCCCccEEEeccCc
Q 036454          266 LVPSSASFRNLTVLKVCNCWQLISLVTPQTAKTLVQLRELRVSECN  311 (410)
Q Consensus       266 l~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~  311 (410)
                      ++ .+..+++|++|+++++ ++..++....+..+++|++|++++++
T Consensus       108 l~-~~~~l~~L~~L~L~~N-~i~~~~~~~~l~~l~~L~~L~L~~N~  151 (198)
T d1m9la_         108 LS-GIEKLVNLRVLYMSNN-KITNWGEIDKLAALDKLEDLLLAGNP  151 (198)
T ss_dssp             HH-HHHHHHHSSEEEESEE-ECCCHHHHHHHTTTTTCSEEEECSSH
T ss_pred             cc-cccccccccccccccc-hhccccccccccCCCccceeecCCCc
Confidence            43 2456777888888665 35555432345677788888887753

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=98.65  E-value=6.2e-10  Score=92.67  Aligned_cols=61  Identities=16%  Similarity=0.268  Sum_probs=31.7

Q ss_pred             cccccEEEEEeCCCccch-hhhhhhcccCceEEEeccccccccccchh-----hccccccCcccEEE
Q 036454          166 FHKLKILHFISDGSDFFQ-VGLLQNIHNLEKLVLSTCEYKKIFSCEEV-----EEHAEGIAQIKSLK  226 (410)
Q Consensus       166 l~~L~~L~l~~~~~~~~~-~~~l~~l~~L~~L~l~~~~~~~~~~~~~~-----~~~~~~l~~L~~L~  226 (410)
                      +++|+.|+++.+.+..++ ...+.++++|+.|++++|.+.........     ......+|+|+.|+
T Consensus       114 l~~L~~L~L~~N~i~~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~~r~~vi~~lp~L~~LD  180 (198)
T d1m9la_         114 LVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD  180 (198)
T ss_dssp             HHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSSHHHHHHCTTTTHHHHHHHHHHHCSSCCEES
T ss_pred             cccccccccccchhccccccccccCCCccceeecCCCccccCcccccchhhHHHHHHHHCCCcCEeC
Confidence            344444444333333332 23567788888888888765443321000     00134568888876

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=98.63  E-value=9.8e-08  Score=78.62  Aligned_cols=68  Identities=15%  Similarity=0.068  Sum_probs=32.8

Q ss_pred             CcccEEEeccCcCccccCchhHHhhhhccceEeeccccCcceEeccCCCCCCCcccccCCCccEEeeccCCCccccccC
Q 036454           47 RNLVVVRIFDCQSLKNIFPTSIARSLLRLETLSIKDCGSVEEIVANDGRGNDAATKFIFPSLTFLRLRDLPDLTTFYSG  125 (410)
Q Consensus        47 ~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~  125 (410)
                      +++++|+++++ .+....+...+.++++|++|+++++. +..++.        ..+..+++|+.|+++++ .++.++..
T Consensus        29 ~~l~~L~Ls~N-~i~~~~~~~~f~~l~~L~~L~L~~N~-i~~~~~--------~~~~~~~~L~~L~Ls~N-~l~~l~~~   96 (192)
T d1w8aa_          29 LHTTELLLNDN-ELGRISSDGLFGRLPHLVKLELKRNQ-LTGIEP--------NAFEGASHIQELQLGEN-KIKEISNK   96 (192)
T ss_dssp             TTCSEEECCSC-CCCSBCCSCSGGGCTTCCEEECCSSC-CCCBCT--------TTTTTCTTCCEEECCSC-CCCEECSS
T ss_pred             CCCCEEEeCCC-CCcccccccccCCCceEeeeeccccc-cccccc--------cccccccccceeeeccc-cccccCHH
Confidence            45566666655 33222222222455666666665554 433332        13344555666666655 44444443

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=98.62  E-value=4.2e-08  Score=80.93  Aligned_cols=87  Identities=22%  Similarity=0.290  Sum_probs=43.5

Q ss_pred             hhhhcccCceEEEeccccccccccchhhccccccCcccEEEeCCcccccccccCCCCccccccccceEEEEecccccccc
Q 036454          186 LLQNIHNLEKLVLSTCEYKKIFSCEEVEEHAEGIAQIKSLKLKKLWLIEEHLWNPDSKLDSFLQNLEFLEVKKCALSLIS  265 (410)
Q Consensus       186 ~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~l~~  265 (410)
                      .+.++++|+.|+++++.+..+..     ..+..+++|++|++++     +.+.......+..+++|++|++++|  .++.
T Consensus        49 ~f~~l~~L~~L~L~~N~i~~~~~-----~~~~~~~~L~~L~Ls~-----N~l~~l~~~~F~~l~~L~~L~L~~N--~l~~  116 (192)
T d1w8aa_          49 LFGRLPHLVKLELKRNQLTGIEP-----NAFEGASHIQELQLGE-----NKIKEISNKMFLGLHQLKTLNLYDN--QISC  116 (192)
T ss_dssp             SGGGCTTCCEEECCSSCCCCBCT-----TTTTTCTTCCEEECCS-----CCCCEECSSSSTTCTTCCEEECCSS--CCCE
T ss_pred             ccCCCceEeeeeccccccccccc-----cccccccccceeeecc-----ccccccCHHHHhCCCcccccccCCc--cccc
Confidence            34555666666666555544432     1234455555555555     2221112233455566666666666  4554


Q ss_pred             cccC-ccccCccCEEEEccc
Q 036454          266 LVPS-SASFRNLTVLKVCNC  284 (410)
Q Consensus       266 l~~~-~~~~~~L~~L~l~~c  284 (410)
                      +++. +..+++|++|++++.
T Consensus       117 i~~~~f~~l~~L~~l~L~~N  136 (192)
T d1w8aa_         117 VMPGSFEHLNSLTSLNLASN  136 (192)
T ss_dssp             ECTTSSTTCTTCCEEECTTC
T ss_pred             cCHHHhcCCccccccccccc
Confidence            4432 345566666666544

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=98.50  E-value=2.3e-08  Score=90.58  Aligned_cols=74  Identities=14%  Similarity=-0.018  Sum_probs=36.2

Q ss_pred             ccccccCcccEEEeccCcCccccCchhH---HhhhhccceEeeccccCcceEeccCCC--CCCCcccccCCCccEEeecc
Q 036454           41 QGKLIFRNLVVVRIFDCQSLKNIFPTSI---ARSLLRLETLSIKDCGSVEEIVANDGR--GNDAATKFIFPSLTFLRLRD  115 (410)
Q Consensus        41 ~~~~~l~~L~~L~l~~~~~l~~~~~~~~---~~~l~~L~~L~l~~~~~l~~~~~~~~~--~~~~~~~~~l~~L~~L~l~~  115 (410)
                      ..+....++++|+++++ .+.......+   ....++|+.++++++. ..........  ......+...++|+.|++++
T Consensus        25 ~~L~~~~~l~~L~Ls~n-~i~~~~~~~l~~~l~~~~~L~~l~l~~~~-~~~~~~~~~~~~~~l~~~l~~~~~L~~L~L~~  102 (344)
T d2ca6a1          25 AVLLEDDSVKEIVLSGN-TIGTEAARWLSENIASKKDLEIAEFSDIF-TGRVKDEIPEALRLLLQALLKCPKLHTVRLSD  102 (344)
T ss_dssp             HHHHHCSCCCEEECTTS-EECHHHHHHHHHTTTTCTTCCEEECCSCC-TTSCGGGSHHHHHHHHHHHTTCTTCCEEECCS
T ss_pred             HHHhhCCCCCEEECcCC-cCCHHHHHHHHHHHHhCCCCCEEECCCCc-ccccccccchHHHHHHHHHhhCCCcccccccc
Confidence            33456778888888877 3332211111   1345777788777653 2111100000  00001233456777777776


Q ss_pred             C
Q 036454          116 L  116 (410)
Q Consensus       116 ~  116 (410)
                      +
T Consensus       103 n  103 (344)
T d2ca6a1         103 N  103 (344)
T ss_dssp             C
T ss_pred             c
Confidence            6

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=98.46  E-value=1.8e-08  Score=91.27  Aligned_cols=257  Identities=13%  Similarity=0.045  Sum_probs=132.5

Q ss_pred             ccccccCCcEEEecCccccc-cccccCCccccccCcccEEEeccCcCc--cccCc------hhHHhhhhccceEeecccc
Q 036454           14 HSGAATQLRELHVFHLPKLT-KLWNKDPQGKLIFRNLVVVRIFDCQSL--KNIFP------TSIARSLLRLETLSIKDCG   84 (410)
Q Consensus        14 ~~~~~~~L~~L~l~~~~~l~-~~~~~~~~~~~~l~~L~~L~l~~~~~l--~~~~~------~~~~~~l~~L~~L~l~~~~   84 (410)
                      .+.....|+.|+++++. +. .-+......+...++|+.+++.++..-  ....+      ......+++|++|+++++.
T Consensus        26 ~L~~~~~l~~L~Ls~n~-i~~~~~~~l~~~l~~~~~L~~l~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~L~~L~L~~n~  104 (344)
T d2ca6a1          26 VLLEDDSVKEIVLSGNT-IGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNA  104 (344)
T ss_dssp             HHHHCSCCCEEECTTSE-ECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCC
T ss_pred             HHhhCCCCCEEECcCCc-CCHHHHHHHHHHHHhCCCCCEEECCCCcccccccccchHHHHHHHHHhhCCCcccccccccc
Confidence            46678999999999873 32 111111233457899999999877321  11111      1112456889999999875


Q ss_pred             CcceEeccCCCCCCCcccccCCCccEEeeccCCCccccccCcccCCCCCceEEEEccC-CccccccEEEeeccCcccccc
Q 036454           85 SVEEIVANDGRGNDAATKFIFPSLTFLRLRDLPDLTTFYSGMHILECPELRKLEVNHV-DVFANLEELTLSKCIFTTWRQ  163 (410)
Q Consensus        85 ~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~~-~~l~~L~~L~i~~~~~~~~~~  163 (410)
                       +.......    ....+...++|++|+++++. +.......+.   ..+..+..... ...+.|+.+.++++.+.....
T Consensus       105 -i~~~~~~~----l~~~l~~~~~L~~L~l~~n~-l~~~~~~~l~---~~l~~~~~~~~~~~~~~L~~l~l~~n~i~~~~~  175 (344)
T d2ca6a1         105 -FGPTAQEP----LIDFLSKHTPLEHLYLHNNG-LGPQAGAKIA---RALQELAVNKKAKNAPPLRSIICGRNRLENGSM  175 (344)
T ss_dssp             -CCTTTHHH----HHHHHHHCTTCCEEECCSSC-CHHHHHHHHH---HHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGH
T ss_pred             -cccccccc----hhhhhcccccchheeccccc-cccccccccc---ccccccccccccccCcccceeeccccccccccc
Confidence             33211000    00134456899999999873 3221100000   00000000000 112445555555544321111


Q ss_pred             -----c--ccccccEEEEEeCCCccc-----hhhhhhhcccCceEEEeccccccccccchhhccccccCcccEEEeCCcc
Q 036454          164 -----A--QFHKLKILHFISDGSDFF-----QVGLLQNIHNLEKLVLSTCEYKKIFSCEEVEEHAEGIAQIKSLKLKKLW  231 (410)
Q Consensus       164 -----~--~l~~L~~L~l~~~~~~~~-----~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~  231 (410)
                           .  ..+.|+.|++....+...     ....+..+++|+.|++++|.+....... -......+++|++|++++|.
T Consensus       176 ~~l~~~l~~~~~L~~L~L~~n~i~~~g~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~~-L~~~l~~~~~L~~L~Ls~n~  254 (344)
T d2ca6a1         176 KEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSA-LAIALKSWPNLRELGLNDCL  254 (344)
T ss_dssp             HHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHH-HHHHGGGCTTCCEEECTTCC
T ss_pred             ccccchhhhhhhhcccccccccccccccccchhhhhcchhhhccccccccccccccccc-ccccccccccchhhhhhcCc
Confidence                 0  156777777744433321     2234567788999999888754321100 01124456889999998865


Q ss_pred             cccccccCCCCcccc--ccccceEEEEecccccccc-----cccCc-cccCccCEEEEccc
Q 036454          232 LIEEHLWNPDSKLDS--FLQNLEFLEVKKCALSLIS-----LVPSS-ASFRNLTVLKVCNC  284 (410)
Q Consensus       232 ~l~~~~~~~~~~~~~--~~~~L~~L~l~~~~~~l~~-----l~~~~-~~~~~L~~L~l~~c  284 (410)
                      --+.... .-...+.  ..+.|++|++++|.  ++.     +...+ ...++|++|+++++
T Consensus       255 i~~~g~~-~l~~~l~~~~~~~L~~L~ls~N~--i~~~~~~~l~~~l~~~~~~L~~L~l~~N  312 (344)
T d2ca6a1         255 LSARGAA-AVVDAFSKLENIGLQTLRLQYNE--IELDAVRTLKTVIDEKMPDLLFLELNGN  312 (344)
T ss_dssp             CCHHHHH-HHHHHHHTCSSCCCCEEECCSSC--CBHHHHHHHHHHHHHHCTTCCEEECTTS
T ss_pred             cCchhhH-HHHHHhhhccCCCCCEEECCCCc--CChHHHHHHHHHHHccCCCCCEEECCCC
Confidence            3200000 0001122  23679999999984  322     22222 24678999999775

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.24  E-value=1.5e-06  Score=68.64  Aligned_cols=92  Identities=18%  Similarity=0.080  Sum_probs=66.0

Q ss_pred             CCcEEEecCccccccccccCCccccccCcccEEEeccCcCccccCchhHHhhhhccceEeeccccCcceEeccCCCCCCC
Q 036454           20 QLRELHVFHLPKLTKLWNKDPQGKLIFRNLVVVRIFDCQSLKNIFPTSIARSLLRLETLSIKDCGSVEEIVANDGRGNDA   99 (410)
Q Consensus        20 ~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~   99 (410)
                      ....++..+.. +...    |..+..+++|++|++.++..++.+++..+ .++++|+.|+++++. ++.++.        
T Consensus         9 ~~~~l~c~~~~-~~~~----p~~l~~l~~l~~L~l~~n~~l~~i~~~~f-~~l~~L~~L~Ls~N~-l~~i~~--------   73 (156)
T d2ifga3           9 GSSGLRCTRDG-ALDS----LHHLPGAENLTELYIENQQHLQHLELRDL-RGLGELRNLTIVKSG-LRFVAP--------   73 (156)
T ss_dssp             SSSCEECCSSC-CCTT----TTTSCSCSCCSEEECCSCSSCCEECGGGS-CSCCCCSEEECCSSC-CCEECT--------
T ss_pred             CCCeEEecCCC-CccC----cccccCccccCeeecCCCccccccCchhh-ccccccCcceeeccc-cCCccc--------
Confidence            34456666542 2222    56666788999999987766777766554 578999999999886 888765        


Q ss_pred             cccccCCCccEEeeccCCCccccccCcc
Q 036454          100 ATKFIFPSLTFLRLRDLPDLTTFYSGMH  127 (410)
Q Consensus       100 ~~~~~l~~L~~L~l~~~~~l~~~~~~~~  127 (410)
                      ..+..+++|+.|+|+++ .++.++.+.+
T Consensus        74 ~~f~~l~~L~~L~Ls~N-~l~~l~~~~~  100 (156)
T d2ifga3          74 DAFHFTPRLSRLNLSFN-ALESLSWKTV  100 (156)
T ss_dssp             TGGGSCSCCCEEECCSS-CCSCCCSTTT
T ss_pred             ccccccccccceeccCC-CCcccChhhh
Confidence            14567789999999987 6777777654

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.18  E-value=3.8e-06  Score=66.21  Aligned_cols=43  Identities=19%  Similarity=0.237  Sum_probs=18.5

Q ss_pred             ccCcccEEEeccCcCccccCchhHHhhhhccceEeeccccCcceEe
Q 036454           45 IFRNLVVVRIFDCQSLKNIFPTSIARSLLRLETLSIKDCGSVEEIV   90 (410)
Q Consensus        45 ~l~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~   90 (410)
                      .+++|+.|+++++ .++.+++..+ .++++|++|+++++. ++.++
T Consensus        54 ~l~~L~~L~Ls~N-~l~~i~~~~f-~~l~~L~~L~Ls~N~-l~~l~   96 (156)
T d2ifga3          54 GLGELRNLTIVKS-GLRFVAPDAF-HFTPRLSRLNLSFNA-LESLS   96 (156)
T ss_dssp             SCCCCSEEECCSS-CCCEECTTGG-GSCSCCCEEECCSSC-CSCCC
T ss_pred             cccccCcceeecc-ccCCcccccc-cccccccceeccCCC-CcccC
Confidence            4444444444444 3444433322 344444444444443 44443

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.16  E-value=0.00044  Score=54.25  Aligned_cols=15  Identities=13%  Similarity=0.271  Sum_probs=7.6

Q ss_pred             hhhhccceEeecccc
Q 036454           70 RSLLRLETLSIKDCG   84 (410)
Q Consensus        70 ~~l~~L~~L~l~~~~   84 (410)
                      .++++|++|+++++.
T Consensus        62 ~~~~~L~~L~Ls~N~   76 (162)
T d1koha1          62 ENIPELLSLNLSNNR   76 (162)
T ss_dssp             HHCTTCCCCCCCSSC
T ss_pred             HhCCCCCEeeCCCcc
Confidence            345555555555543

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.92  E-value=0.00046  Score=54.10  Aligned_cols=39  Identities=23%  Similarity=0.256  Sum_probs=22.2

Q ss_pred             hhcccCceEEEeccccccccccchhhccccccCcccEEEeCC
Q 036454          188 QNIHNLEKLVLSTCEYKKIFSCEEVEEHAEGIAQIKSLKLKK  229 (410)
Q Consensus       188 ~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~  229 (410)
                      .++++|+.|++++|.+..+..   ....+..+++|+.|++++
T Consensus        62 ~~~~~L~~L~Ls~N~i~~l~~---~~~~~~~l~~L~~L~Ls~  100 (162)
T d1koha1          62 ENIPELLSLNLSNNRLYRLDD---MSSIVQKAPNLKILNLSG  100 (162)
T ss_dssp             HHCTTCCCCCCCSSCCCCCSG---GGTHHHHSTTCCCCCCTT
T ss_pred             HhCCCCCEeeCCCccccCCch---hHHHHhhCCccccccccc
Confidence            467778888887777665532   011223455566666655

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=95.57  E-value=0.0033  Score=49.20  Aligned_cols=117  Identities=15%  Similarity=0.050  Sum_probs=50.8

Q ss_pred             hhcccCceEEEeccc-cccccccchhhccccccCcccEEEeCCcccccccccCCCCccccccccceEEEEecccccccc-
Q 036454          188 QNIHNLEKLVLSTCE-YKKIFSCEEVEEHAEGIAQIKSLKLKKLWLIEEHLWNPDSKLDSFLQNLEFLEVKKCALSLIS-  265 (410)
Q Consensus       188 ~~l~~L~~L~l~~~~-~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~l~~-  265 (410)
                      .+.+.|++|+++++. +..-... .........++|++|++++|.-- ..-...-.+.+...+.|++|++++|.  +.. 
T Consensus        12 ~n~~~L~~L~L~~~~~i~~~~~~-~l~~~L~~n~~L~~L~Ls~n~l~-~~~~~~la~~L~~n~~L~~L~L~~n~--i~~~   87 (167)
T d1pgva_          12 EDDTDLKEVNINNMKRVSKERIR-SLIEAACNSKHIEKFSLANTAIS-DSEARGLIELIETSPSLRVLNVESNF--LTPE   87 (167)
T ss_dssp             TTCSSCCEEECTTCCSSCHHHHH-HHHHHHTTCSCCCEEECTTSCCB-HHHHTTHHHHHHHCSSCCEEECCSSB--CCHH
T ss_pred             hCCCCCcEEEeCCCCCCCHHHHH-HHHHHHhhCCccceeeccccccc-hhHHHHHhhhhhhcccccceeeehhh--cchH
Confidence            345667777776532 2111000 00111233456667766664322 11000001223445666777776663  221 


Q ss_pred             ----cccCccccCccCEEEEcccCCccccc------chhhhhcCCCccEEEecc
Q 036454          266 ----LVPSSASFRNLTVLKVCNCWQLISLV------TPQTAKTLVQLRELRVSE  309 (410)
Q Consensus       266 ----l~~~~~~~~~L~~L~l~~c~~l~~~~------~~~~~~~l~~L~~L~l~~  309 (410)
                          +...+..-++|++|+++++. ...+.      ....+...++|++|+++.
T Consensus        88 g~~~l~~aL~~n~sL~~L~l~~n~-~~~~g~~~~~~l~~~L~~n~sL~~l~l~~  140 (167)
T d1pgva_          88 LLARLLRSTLVTQSIVEFKADNQR-QSVLGNQVEMDMMMAIEENESLLRVGISF  140 (167)
T ss_dssp             HHHHHHHHTTTTCCCSEEECCCCS-SCCCCHHHHHHHHHHHHHCSSCCEEECCC
T ss_pred             HHHHHHHHHHhCCcCCEEECCCCc-CCCccHHHHHHHHHHHHhCCCccEeeCcC
Confidence                22223344567777775441 11111      112234456666666654

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=94.55  E-value=0.015  Score=45.20  Aligned_cols=43  Identities=9%  Similarity=0.016  Sum_probs=23.3

Q ss_pred             hhhhccceEeeccccCcceEeccCCCCCCCcccccCCCccEEeeccC
Q 036454           70 RSLLRLETLSIKDCGSVEEIVANDGRGNDAATKFIFPSLTFLRLRDL  116 (410)
Q Consensus        70 ~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~  116 (410)
                      .+.++|++|+++++..+..-....    ....+...++|+.|+++++
T Consensus        12 ~n~~~L~~L~L~~~~~i~~~~~~~----l~~~L~~n~~L~~L~Ls~n   54 (167)
T d1pgva_          12 EDDTDLKEVNINNMKRVSKERIRS----LIEAACNSKHIEKFSLANT   54 (167)
T ss_dssp             TTCSSCCEEECTTCCSSCHHHHHH----HHHHHTTCSCCCEEECTTS
T ss_pred             hCCCCCcEEEeCCCCCCCHHHHHH----HHHHHhhCCccceeecccc
Confidence            456788888887654333211100    0012344467788888776

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=94.09  E-value=0.007  Score=47.12  Aligned_cols=120  Identities=15%  Similarity=0.026  Sum_probs=52.1

Q ss_pred             hhhcccCceEEEecc-ccccccccchhhccccccCcccEEEeCCcccccccccCCCCccccccccceEEEEecccccc--
Q 036454          187 LQNIHNLEKLVLSTC-EYKKIFSCEEVEEHAEGIAQIKSLKLKKLWLIEEHLWNPDSKLDSFLQNLEFLEVKKCALSL--  263 (410)
Q Consensus       187 l~~l~~L~~L~l~~~-~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~l--  263 (410)
                      ..+.++|++|++++. .+..-.-. .........++|++|++++|.-- ..-...-...+...+.++.+++++|. .-  
T Consensus        13 ~~~~~~L~~L~L~~~~~i~~~~~~-~l~~al~~n~~L~~L~Ls~n~l~-~~~~~~L~~~l~~~~~l~~l~l~~~~-~~~~   89 (166)
T d1io0a_          13 QNNDPDLEEVNLNNIMNIPVPTLK-ACAEALKTNTYVKKFSIVGTRSN-DPVAFALAEMLKVNNTLKSLNVESNF-ISGS   89 (166)
T ss_dssp             HTTCTTCCEEECTTCTTCCHHHHH-HHHHHHTTCCSCCEEECTTSCCC-HHHHHHHHHHHHHCSSCCEEECCSSC-CCHH
T ss_pred             HhcCCCCcEEEcCCCCCCCHHHHH-HHHHHHhcCCccCeeeccCCccc-HHHHHHHHHHHhhcccchhhhhcccc-ccch
Confidence            345567777777653 22111000 01111234566777777664221 00000001223445666666666664 11  


Q ss_pred             --cccccCccccCccCEEEEcccC-Ccccccc---hhhhhcCCCccEEEecc
Q 036454          264 --ISLVPSSASFRNLTVLKVCNCW-QLISLVT---PQTAKTLVQLRELRVSE  309 (410)
Q Consensus       264 --~~l~~~~~~~~~L~~L~l~~c~-~l~~~~~---~~~~~~l~~L~~L~l~~  309 (410)
                        ..+...+...++|+.++++.+. .+.+-..   ...+...++|++|++..
T Consensus        90 g~~~l~~~l~~~~~L~~l~L~l~~n~i~~~~~~~La~~L~~n~~L~~L~l~~  141 (166)
T d1io0a_          90 GILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHF  141 (166)
T ss_dssp             HHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCC
T ss_pred             hHHHHHHHHHhCccccEEeeccCCCcCcHHHHHHHHHHHHhCCCcCEEeCcC
Confidence              1122333445666666665432 2322111   12234556666666654

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=92.40  E-value=0.047  Score=42.09  Aligned_cols=43  Identities=7%  Similarity=-0.050  Sum_probs=22.6

Q ss_pred             hhhhccceEeeccccCcceEeccCCCCCCCcccccCCCccEEeeccC
Q 036454           70 RSLLRLETLSIKDCGSVEEIVANDGRGNDAATKFIFPSLTFLRLRDL  116 (410)
Q Consensus        70 ~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~  116 (410)
                      .+.|+|++|+++++..+..-....    ....+...++|++|+++++
T Consensus        14 ~~~~~L~~L~L~~~~~i~~~~~~~----l~~al~~n~~L~~L~Ls~n   56 (166)
T d1io0a_          14 NNDPDLEEVNLNNIMNIPVPTLKA----CAEALKTNTYVKKFSIVGT   56 (166)
T ss_dssp             TTCTTCCEEECTTCTTCCHHHHHH----HHHHHTTCCSCCEEECTTS
T ss_pred             hcCCCCcEEEcCCCCCCCHHHHHH----HHHHHhcCCccCeeeccCC
Confidence            456778888887654332211100    0012344567777777776